18627 40 0 1 chr3 0 2422 -227522156 - L1P LINE L1 -1647 4499 2079 1723 94 0 0 chr3 2421 2665 -227521913 + L1P LINE L1 729 972 -5174 * 532 246 43 21 chr3 3767 3954 -227520624 - L1MC4a LINE L1 -1873 5935 5745 265 286 76 34 chr3 3990 4109 -227520469 - MIR SINE MIR -71 191 68 1332 175 21 79 chr3 4269 4560 -227520018 + AluJb SINE Alu 21 294 -18 17859 130 17 12 chr3 5041 8095 -227516483 - L1P LINE L1 -3067 3079 11 371 234 30 72 chr3 8116 8283 -227516295 - L1 LINE L1 -3763 2383 2224 692 217 136 77 chr3 8821 9023 -227515555 - MIR SINE MIR -12 250 31 1700 213 7 3 chr3 9023 9333 -227515245 - AluJb SINE Alu -1 311 1 692 217 136 77 chr3 9333 9365 -227515213 - MIR SINE MIR -231 31 2 202 234 172 0 chr3 9711 9775 -227514803 - MIR SINE MIR -30 232 158 260 343 19 28 chr3 10716 10824 -227513754 - MIR SINE MIR -76 132 26 2576 108 44 33 chr3 11347 11828 -227512750 + LTR21A LTR ERV1 1 486 -19 207 323 15 0 chr3 12130 12195 -227512383 + MIR3 SINE MIR 134 199 -9 468 265 81 27 chr3 12749 12934 -227511644 - MIR SINE MIR -28 234 40 237 326 93 29 chr3 12940 13284 -227511294 + L1MC4a LINE L1 4804 5169 -977 1576 162 3 73 chr3 13374 13689 -227510889 + AluJb SINE Alu 1 293 -19 1381 243 107 28 chr3 13710 14291 -227510287 + L1MC4a LINE L1 5298 5924 -1884 2450 203 15 48 chr3 14718 15369 -227509209 - LTR27 LTR ERV1 0 636 7 358 175 98 63 chr3 15593 15736 -227508842 - LTR23-int LTR ERV1 -337 4786 4639 7916 75 3 1 chr3 15751 16878 -227507700 - L1P LINE L1 -4055 2091 962 691 315 40 11 chr3 17078 17653 -227506925 - L1 LINE L1 -1076 5070 4474 1884 181 3 3 chr3 17653 17957 -227506621 - AluJb SINE Alu -8 304 1 691 315 40 11 chr3 17957 17968 -227506610 - L1 LINE L1 -1672 4474 4465 40012 53 7 3 chr3 18000 24048 -227500530 + L1PA3 LINE L1 9 6083 -72 5811 50 0 0 chr3 24148 24869 -227499709 + L1PA3 LINE L1 5435 6155 0 207 0 0 0 chr3 24873 24896 -227499682 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4121 235 27 12 chr3 24897 26599 -227497979 - L1PA13 LINE L1 -3771 3026 1285 845 224 49 20 chr3 26713 26959 -227497619 - L1MB7 LINE L1 -105 7498 7246 426 188 60 0 chr3 26956 27073 -227497505 - L1MB7 LINE L1 -914 6651 6528 * 1115 218 74 4 chr3 27173 27402 -227497176 + AluJb SINE Alu 1 245 -67 6983 188 43 19 chr3 27413 30113 -227494465 - L1MB7 LINE L1 -2083 5482 2715 988 53 30 0 chr3 30134 30266 -227494312 - L1PA4 LINE L1 -3 6152 6017 2431 147 70 3 chr3 30266 30850 -227493728 - THE1C-int LTR MaLR -960 691 1 2404 143 8 0 chr3 30850 31222 -227493356 - THE1C LTR MaLR 0 375 1 556 83 21 10 chr3 31275 31371 -227493207 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 24 67 0 0 chr3 31384 31429 -227493149 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr3 31556 31591 -227492987 + AT_rich Low_complexity Low_complexity 1 35 0 1341 147 0 0 chr3 31869 32101 -227492477 + L1PA11 LINE L1 2408 2639 -3507 13937 178 18 3 chr3 32202 35788 -227488790 + L1PA11 LINE L1 2596 6168 -6 2023 128 39 62 chr3 35789 36011 -227488567 + L1M1 LINE L1 3067 3293 -4272 6793 74 0 6 chr3 36011 37413 -227487165 - L1PA5 LINE L1 -3 6151 4752 2023 128 39 62 chr3 37413 37704 -227486874 + L1M1 LINE L1 3293 3568 -3997 39876 61 1 0 chr3 37704 43716 -227480862 + L1PA4 LINE L1 1 6019 -136 1518 56 0 0 chr3 43816 44014 -227480564 + L1P LINE L1 3456 3653 -2493 439 91 15 0 chr3 44013 44079 -227480499 - L1M1 LINE L1 -576 5726 5660 * 6172 148 15 6 chr3 44076 45305 -227479273 + L1MA1 LINE L1 5063 6302 0 1942 127 95 24 chr3 45317 45382 -227479196 + L1PA15 LINE L1 5769 5828 -337 2351 141 11 13 chr3 45382 45758 -227478820 + THE1C LTR MaLR 1 375 0 1942 127 95 24 chr3 45758 46062 -227478516 + L1PA15 LINE L1 5828 6164 -1 384 228 10 0 chr3 46066 46167 -227478411 + L1MB7 LINE L1 6065 6166 -18 1004 192 50 50 chr3 46187 46489 -227478089 + L1MB7 LINE L1 5883 6184 0 515 188 26 0 chr3 46489 46606 -227477972 - L1 LINE L1 -2749 3397 3278 * 586 203 15 0 chr3 46604 46737 -227477841 + L1 LINE L1 3415 3549 -2597 24962 52 2 2 chr3 46837 51865 -227472713 - L1P LINE L1 -988 5158 1 10171 229 27 13 chr3 51862 54947 -227469631 + L1P4 LINE L1 2358 5483 -682 * 12686 61 63 0 chr3 54949 57297 -227467281 + L1PA5 LINE L1 3752 6153 -1 1666 185 40 10 chr3 57635 57814 -227466764 - AluJo SINE Alu -5 307 114 186 43 0 0 chr3 57814 57837 -227466741 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1666 185 40 10 chr3 57837 57954 -227466624 - AluJo SINE Alu -198 114 2 330 215 15 0 chr3 58486 58551 -227466027 - MER5A DNA MER1_type -123 66 1 2439 47 40 3 chr3 59122 59421 -227465157 - AluY SINE Alu -1 310 1 2308 120 10 0 chr3 59822 60131 -227464447 - AluSx SINE Alu 0 312 1 441 219 80 29 chr3 60799 60936 -227463642 + MIR3 SINE MIR 54 197 -11 394 208 157 38 chr3 60936 61095 -227463483 + MER5B DNA MER1_type 1 178 0 2281 179 30 49 chr3 61169 61677 -227462901 - MLT1D LTR MaLR -7 498 1 501 201 63 13 chr3 61947 62106 -227462472 + MER53 DNA DNA 1 167 -22 216 223 43 129 chr3 62284 62423 -227462155 - MIR SINE MIR -50 212 86 267 284 181 17 chr3 62982 63098 -227461480 - MIR3 SINE MIR -60 148 14 1968 142 10 3 chr3 63264 63560 -227461018 - AluSq SINE Alu -15 298 1 1795 185 116 44 chr3 64084 64517 -227460061 - MER31B LTR ERV1 0 466 3 692 288 27 51 chr3 64839 64942 -227459636 - MIR SINE MIR 0 262 158 2324 179 63 32 chr3 64942 65434 -227459144 - LTR22 LTR ERVK -2 507 1 692 288 27 51 chr3 65434 65587 -227458991 - MIR SINE MIR -104 158 12 376 290 36 29 chr3 65572 65710 -227458868 - MIR3 SINE MIR -43 165 27 * 489 310 17 29 chr3 65767 65941 -227458637 + MIR SINE MIR 41 212 -50 183 365 149 0 chr3 67028 67135 -227457443 - MIR SINE MIR -66 142 20 204 324 0 14 chr3 67616 67687 -227456891 - MIR3 SINE MIR -24 184 115 414 271 113 26 chr3 68021 68172 -227456406 - MIR3 SINE MIR -11 197 34 250 271 146 10 chr3 68189 68285 -227456293 - MIR SINE MIR -55 153 45 1708 196 0 20 chr3 68308 68609 -227455969 - AluJb SINE Alu -17 295 1 445 276 178 6 chr3 68610 68773 -227455805 - MIR SINE MIR -64 198 8 349 203 212 25 chr3 68894 69012 -227455566 - L1ME4a LINE L1 -14 6107 5968 539 222 9 0 chr3 69532 69640 -227454938 + MER81 DNA DNA 1 109 -5 7315 44 33 1 chr3 69671 71342 -227453236 + L1PA4 LINE L1 4458 6154 -1 328 279 103 22 chr3 71375 71511 -227453067 - MIR SINE MIR -113 149 3 537 320 90 21 chr3 71773 72107 -227452471 + L2 LINE L2 1229 1585 -1729 328 287 0 23 chr3 72096 72183 -227452395 + L2 LINE L2 3229 3313 0 * 188 319 21 0 chr3 72194 72241 -227452337 + MIR SINE MIR 93 140 -68 22 0 0 0 chr3 72599 72621 -227451957 + AT_rich Low_complexity Low_complexity 1 22 0 439 326 74 107 chr3 72921 73286 -227451292 + L2 LINE L2 2918 3270 -2 643 269 90 12 chr3 73291 73547 -227451031 + L2 LINE L2 2999 3274 -39 182 275 0 0 chr3 73623 73663 -227450915 + MIR SINE MIR 159 198 -64 1193 136 14 0 chr3 73742 73962 -227450616 - L1MA6 LINE L1 -1 6299 6077 2932 48 19 3 chr3 74025 74401 -227450177 - L1PA6 LINE L1 -3 6151 5770 33751 108 6 9 chr3 74407 80571 -227444007 - L1PA6 LINE L1 0 6154 17 23 33 0 0 chr3 81097 81127 -227443451 + AT_rich Low_complexity Low_complexity 1 30 0 611 223 19 38 chr3 82445 82656 -227441922 + L1MA9 LINE L1 6068 6274 -38 2306 107 3 0 chr3 82685 82985 -227441593 + AluSp SINE Alu 3 303 -10 3083 47 0 0 chr3 83179 83561 -227441017 - L1PA4 LINE L1 -3 6152 5771 2291 39 0 0 chr3 83561 83845 -227440733 + L1P2 LINE L1 5439 5722 -433 559 140 11 0 chr3 84123 84216 -227440362 - L1PB4 LINE L1 -1 6155 6062 10443 176 29 35 chr3 86376 86581 -227437997 - L1M2 LINE L1 -743 5585 5380 1967 144 3 0 chr3 86581 86866 -227437712 - AluSx SINE Alu -26 286 1 10443 176 29 35 chr3 86866 87928 -227436650 - L1M2 LINE L1 -948 5380 4313 2359 92 0 0 chr3 87928 88232 -227436346 + AluY SINE Alu 1 304 -7 10443 176 29 35 chr3 88232 89538 -227435040 - L1M2 LINE L1 -2015 4313 3091 13044 32 0 15 chr3 89538 91918 -227432660 - L1PA3 LINE L1 0 6155 3798 5124 52 1 0 chr3 91918 92614 -227431964 + L1PA3 LINE L1 3104 3800 -2346 2480 182 24 42 chr3 92611 93232 -227431346 - L1M2 LINE L1 -3227 3101 2492 * 965 147 86 6 chr3 93233 93396 -227431182 - AluSp SINE Alu 0 313 138 3784 228 36 28 chr3 93397 94838 -227429740 - L1M2 LINE L1 -3819 2509 1054 808 213 0 37 chr3 94838 95002 -227429576 + FRAM SINE Alu 1 150 -26 408 111 0 49 chr3 95011 95092 -227429486 - L1M2 LINE L1 -4276 1052 976 501 280 0 8 chr3 95093 95225 -227429353 - L1M2 LINE L1 -5020 308 178 1692 203 41 19 chr3 95471 95994 -227428584 + L1M2c LINE L1 2234 2762 -4734 1519 272 79 31 chr3 97770 98946 -227425632 + L1M2c LINE L1 2558 3658 -3907 780 223 18 6 chr3 98951 99117 -227425461 - L1PA16 LINE L1 -6 6160 5993 2779 113 57 7 chr3 99124 99501 -227425077 + MLT2A1 LTR ERVL 1 403 -41 396 0 0 0 chr3 99501 99545 -227425033 + (TG)n Simple_repeat Simple_repeat 2 45 0 2779 113 57 7 chr3 99545 99590 -227424988 + MLT2A1 LTR ERVL 403 444 0 38215 90 15 9 chr3 99590 104664 -227419914 + HERVL-A1 LTR ERVL 1 5104 -550 2377 107 28 0 chr3 104663 105017 -227419561 + HERVL-A1 LTR ERVL 5291 5654 0 * 1637 118 35 8 chr3 105017 105272 -227419306 + MLT2A1 LTR ERVL 1 262 -182 249 214 71 0 chr3 105278 105362 -227419216 + L1MC4 LINE L1 6614 6703 -1339 231 195 26 13 chr3 105365 105442 -227419136 + (TA)n Simple_repeat Simple_repeat 1 78 0 366 75 0 19 chr3 105453 105506 -227419072 + MLT2A2 LTR ERVL 402 453 0 959 186 0 0 chr3 105516 105683 -227418895 - L1PA16 LINE L1 -188 5978 5812 325 91 18 0 chr3 105701 105756 -227418822 - L1MA2 LINE L1 -3 6301 6246 * 14294 54 5 0 chr3 105750 108233 -227416345 - L1PA3 LINE L1 -1 6154 3660 1892 47 9 0 chr3 108238 108470 -227416108 + L1PA3 LINE L1 3452 3685 -2461 * 5154 231 20 10 chr3 108467 110292 -227414286 - L1M1 LINE L1 -5036 2529 9 * 8845 248 70 27 chr3 110268 111648 -227412930 - L1PB4 LINE L1 -307 7268 5948 2178 136 60 26 chr3 111648 112000 -227412578 - THE1B LTR MaLR 0 364 1 8845 248 70 27 chr3 112000 114232 -227410346 - L1PB4 LINE L1 -1627 5948 3153 731 175 7 73 chr3 114232 114369 -227410209 - FLAM_C SINE Alu -5 128 1 8845 248 70 27 chr3 114369 115510 -227409068 - L1PB4 LINE L1 -4422 3153 2062 280 289 89 0 chr3 115502 115592 -227408986 - L1PB4 LINE L1 -5280 1569 1472 * 294 367 8 8 chr3 116311 116439 -227408139 - L1PB4 LINE L1 -5271 1568 1441 284 369 64 37 chr3 116643 116971 -227407607 - L1PB4 LINE L1 -6355 495 159 3901 225 41 19 chr3 116987 118813 -227405765 + L1MA9 LINE L1 4244 6111 -201 3104 235 35 25 chr3 118835 118858 -227405720 + L1 LINE L1 4360 4381 -1765 1820 164 144 31 chr3 118858 119241 -227405337 + MSTA LTR MaLR 3 428 0 9309 168 10 31 chr3 119245 120855 -227403723 + MSTA-int LTR MaLR 3 1578 -2 2168 153 140 11 chr3 120857 121236 -227403342 + MSTA LTR MaLR 1 428 0 3104 235 35 25 chr3 121236 122086 -227402492 + L1 LINE L1 4383 5250 -896 10756 25 1 0 chr3 122086 124052 -227400526 + L1PA4 LINE L1 4179 6154 -1 14980 105 6 16 chr3 124056 126276 -227398302 + HERVH LTR ERV1 1796 3993 -3720 2580 104 11 20 chr3 126259 126664 -227397914 + HERVH LTR ERV1 3994 5273 -1818 * 28073 54 1 2 chr3 126662 130127 -227394451 + HERVH LTR ERV1 4252 7713 0 2790 67 2 15 chr3 130128 130626 -227393952 + LTR7 LTR ERV1 2 448 -2 4165 122 8 0 chr3 130628 131257 -227393321 - L1P3 LINE L1 -2302 4159 3526 192 77 0 0 chr3 131300 131326 -227393252 + (T)n Simple_repeat Simple_repeat 1 26 0 6799 26 1 1 chr3 131329 132109 -227392469 - L1PA3 LINE L1 -3 6152 5373 * 15866 136 41 22 chr3 132103 135564 -227389014 - L1P3 LINE L1 -2919 3542 5 591 200 20 33 chr3 135574 135724 -227388854 + L1MA9 LINE L1 5798 5945 -367 446 329 38 29 chr3 135732 136045 -227388533 + L1PA12 LINE L1 7 322 -7259 975 124 103 0 chr3 137115 137260 -227387318 + THE1B LTR MaLR 1 160 -204 5036 238 25 28 chr3 137802 138244 -227386334 + L1PA12 LINE L1 2319 2761 -4823 2053 89 119 0 chr3 138244 138513 -227386065 + AluY SINE Alu 1 301 0 5036 238 25 28 chr3 138513 139035 -227385543 + L1PA12 LINE L1 2761 3283 -4301 1286 46 0 0 chr3 139035 139187 -227385391 - L1PA4 LINE L1 -3 6152 6001 5036 238 25 28 chr3 139187 140161 -227384417 + L1PA12 LINE L1 3283 4269 -3315 * 7750 48 23 0 chr3 140156 141138 -227383440 - L1PA3 LINE L1 -2223 3923 2919 12543 36 1 0 chr3 141138 143328 -227381250 + L1PA3 LINE L1 3953 6147 -8 25386 46 2 0 chr3 143428 147245 -227377333 + L1PA3 LINE L1 2344 6152 -3 21 36 0 0 chr3 147245 147273 -227377305 + AT_rich Low_complexity Low_complexity 1 28 0 1224 188 25 4 chr3 147608 147847 -227376731 + AluJb SINE Alu 38 281 -31 724 235 92 86 chr3 147878 147973 -227376605 - L1MEc LINE L1 -2098 4031 3938 1666 183 27 10 chr3 147973 148274 -227376304 - AluJb SINE Alu -6 306 1 724 235 92 86 chr3 148274 148592 -227375986 - L1MEc LINE L1 -2191 3938 3612 1728 166 3 26 chr3 148592 148894 -227375684 + AluJb SINE Alu 1 295 -17 724 235 92 86 chr3 148894 148934 -227375644 - L1MEc LINE L1 -2517 3612 3574 962 178 5 64 chr3 149215 149391 -227375187 - AluJb SINE Alu -13 299 135 2263 106 0 10 chr3 149391 149703 -227374875 - AluSx SINE Alu -3 309 1 962 178 5 64 chr3 149703 149728 -227374850 - AluJb SINE Alu -177 135 110 459 0 0 0 chr3 149841 149892 -227374686 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1785 167 3 3 chr3 149894 150182 -227374396 - AluJb SINE Alu -16 296 9 532 276 97 15 chr3 150287 150627 -227373951 - L1MEc LINE L1 -3669 2460 2093 7516 36 0 0 chr3 150685 151618 -227372960 - L1PA3 LINE L1 -3 6152 5219 843 19 0 0 chr3 151619 151726 -227372852 + L1PA3 LINE L1 5122 5228 -918 207 0 0 0 chr3 151788 151811 -227372767 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4996 40 5 2 chr3 151882 152517 -227372061 + L1PA3 LINE L1 5538 6174 0 443 273 51 68 chr3 152738 153090 -227371488 - L1MEc LINE L1 -4640 1670 1325 327 260 71 8 chr3 153186 153313 -227371265 - L1MEc LINE L1 -4969 1150 1016 210 71 0 0 chr3 153398 153426 -227371152 + (TA)n Simple_repeat Simple_repeat 1 28 0 468 366 6 6 chr3 154439 154622 -227369956 - MIR SINE MIR 0 262 80 187 284 74 49 chr3 154853 154934 -227369644 + L2 LINE L2 3023 3105 -167 460 301 136 25 chr3 155632 155868 -227368710 - MIR SINE MIR 0 262 1 362 319 145 46 chr3 156287 156591 -227367987 - L2 LINE L2 -781 2533 2200 365 330 100 77 chr3 156640 157603 -227366975 - L2 LINE L2 -14 3258 2280 523 258 48 27 chr3 157747 157933 -227366645 + MLT2D LTR ERVL 79 268 -146 1346 214 4 4 chr3 158045 158320 -227366258 - MLT1A1 LTR MaLR -90 275 1 2075 183 49 43 chr3 158320 158850 -227365728 + L1MB8 LINE L1 5302 5834 -344 416 215 58 5 chr3 158853 158896 -227365682 - L1M4 LINE L1 -2848 3298 3259 308 24 24 0 chr3 158896 158937 -227365641 + (TC)n Simple_repeat Simple_repeat 1 42 0 213 39 0 0 chr3 158936 158962 -227365616 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 416 215 58 5 chr3 158937 159128 -227365450 - L1M4 LINE L1 -2887 3259 3028 * 2218 282 36 50 chr3 159122 159781 -227364797 - L1PB1 LINE L1 0 6151 5502 1074 217 55 3 chr3 159780 160089 -227364489 - L1M4 LINE L1 -1925 4221 3897 * 1226 261 96 0 chr3 160089 160442 -227364136 - L2 LINE L2 -782 2532 2146 227 222 0 0 chr3 161749 161794 -227362784 + (TTA)n Simple_repeat Simple_repeat 1 45 0 527 211 0 0 chr3 162518 162613 -227361965 + FLAM_C SINE Alu 35 129 -14 10219 175 6 20 chr3 162773 165636 -227358942 - L1PA13 LINE L1 -9 6154 3321 2902 39 0 11 chr3 165811 166173 -227358405 - L1PA4 LINE L1 -2 6153 5796 3181 168 16 4 chr3 166174 166738 -227357840 + L1PA4 LINE L1 5209 5774 -381 190 273 11 91 chr3 166837 166925 -227357653 + MER5A DNA MER1_type 51 131 -58 225 132 0 0 chr3 168102 168140 -227356438 + (T)n Simple_repeat Simple_repeat 1 38 0 930 275 108 41 chr3 168394 168607 -227355971 - MLT1J LTR MaLR -18 493 296 2021 129 46 38 chr3 168607 168979 -227355599 - THE1C LTR MaLR 0 375 1 930 275 108 41 chr3 168979 169227 -227355351 - MLT1J LTR MaLR -215 296 1 629 215 56 93 chr3 169226 169440 -227355138 - MER102a DNA MER1_type -1 329 124 * 330 211 180 70 chr3 169618 169746 -227354832 + MER5A DNA MER1_type 48 189 0 700 164 32 4 chr3 169749 169938 -227354640 - MER58B DNA MER1_type -1 340 73 19126 35 0 1 chr3 169938 172397 -227352181 - L1PA2 LINE L1 -2109 4037 1580 11567 27 0 0 chr3 172397 174531 -227350047 + L1PA2 LINE L1 4022 6155 0 301 247 13 13 chr3 174534 174611 -227349967 - MER58B DNA MER1_type -260 81 5 809 233 35 0 chr3 175301 175473 -227349105 - MER5B DNA MER1_type 0 178 1 457 282 0 0 chr3 175528 175631 -227348947 - MER5A DNA MER1_type -83 106 4 183 172 0 0 chr3 175641 175670 -227348908 - MER5A DNA MER1_type -75 114 86 7847 108 3 1 chr3 175810 176971 -227347607 - L1P LINE L1 -4976 1170 7 * 10617 34 1 9 chr3 176970 178343 -227346235 + L1P LINE L1 3891 5253 -893 1855 52 0 0 chr3 178343 178571 -227346007 + L1PA3 LINE L1 5926 6155 0 670 168 87 0 chr3 178589 178762 -227345816 - LTR49-int LTR ERV1 -684 5647 5460 1345 117 75 4 chr3 178763 179003 -227345575 - LTR56 LTR ERV1 -188 257 1 213 172 17 69 chr3 179075 179133 -227345445 + MIR SINE MIR 16 70 -138 486 280 98 13 chr3 179218 179427 -227345151 - MIR SINE MIR -1 261 36 6774 88 44 0 chr3 180043 181808 -227342770 + L1PA7 LINE L1 4349 6151 -3 289 243 14 0 chr3 182354 182428 -227342150 + MER116 DNA Mariner 6 80 0 399 294 80 25 chr3 182762 182925 -227341653 - L2 LINE L2 -191 3081 2910 1122 121 0 0 chr3 183046 183195 -227341383 - AluSq SINE Alu -106 207 59 449 291 171 9 chr3 183435 183645 -227340933 + MIR SINE MIR 7 250 -12 1089 262 54 87 chr3 183736 183818 -227340760 + L2 LINE L2 2464 2547 -767 9061 52 3 0 chr3 183818 185732 -227338846 - L1PA4 LINE L1 0 6155 4239 1089 262 54 87 chr3 185732 186111 -227338467 + L2 LINE L2 2547 2910 -404 379 192 0 39 chr3 186246 186324 -227338254 + L2 LINE L2 3207 3281 -32 2445 62 3 0 chr3 186634 186926 -227337652 + AluY SINE Alu 1 293 -18 252 233 50 67 chr3 187060 187244 -227337334 - L1ME LINE L1 -644 5518 5341 1590 298 44 47 chr3 187278 188445 -227336133 - L1ME LINE L1 -813 5333 4168 396 0 0 0 chr3 188445 188489 -227336089 + (TG)n Simple_repeat Simple_repeat 2 45 0 1590 298 44 47 chr3 188489 188677 -227335901 - L1ME LINE L1 -1978 4168 3981 1544 226 3 7 chr3 188679 188988 -227335590 + AluJo SINE Alu 1 308 -4 596 219 77 146 chr3 189014 189237 -227335341 + MLT1J LTR MaLR 1 171 -340 1967 184 56 10 chr3 189237 189650 -227334928 - MSTB1 LTR MaLR 0 432 1 596 219 77 146 chr3 189650 189934 -227334644 + MLT1J LTR MaLR 171 473 -38 1911 228 32 24 chr3 189962 190413 -227334165 - L1ME1 LINE L1 -5 6161 5701 2274 95 0 0 chr3 190413 190744 -227333834 + AluSx SINE Alu 1 331 0 1911 228 32 24 chr3 190744 190880 -227333698 - L1ME1 LINE L1 -465 5701 5568 1516 176 21 52 chr3 190997 191313 -227333265 + AluJb SINE Alu 1 307 0 327 177 203 0 chr3 192926 193005 -227331573 - L1ME1 LINE L1 -577 5589 5495 800 194 36 12 chr3 193023 193188 -227331390 - AluJb SINE Alu -7 305 137 615 203 16 13 chr3 193191 193389 -227331189 - L1ME1 LINE L1 -730 5436 5242 1208 167 83 78 chr3 193528 193900 -227330678 - MLT1B LTR MaLR -16 374 1 502 208 17 0 chr3 193914 194034 -227330544 - L1ME1 LINE L1 -1098 5048 4927 2727 139 14 59 chr3 194071 194360 -227330218 - L1PA15 LINE L1 -3 6162 5862 1444 170 111 45 chr3 194360 194648 -227329930 - AluSx SINE Alu -2 310 4 2727 139 14 59 chr3 194648 194937 -227329641 - L1PA15 LINE L1 -303 5862 5495 2047 134 0 10 chr3 194937 195235 -227329343 - AluSx SINE Alu -17 295 1 2727 139 14 59 chr3 195235 195389 -227329189 - L1PA15 LINE L1 -670 5495 5336 1555 282 27 29 chr3 195398 195620 -227328958 - L1ME1 LINE L1 -2342 3804 3583 1457 211 16 26 chr3 195620 195928 -227328650 - AluJb SINE Alu -3 309 5 1555 282 27 29 chr3 195928 196023 -227328555 - L1ME1 LINE L1 -2563 3583 3489 730 218 0 0 chr3 196023 196147 -227328431 - FLAM_C SINE Alu -6 127 4 1555 282 27 29 chr3 196147 196561 -227328017 - L1ME1 LINE L1 -2657 3489 3073 6266 101 3 14 chr3 196555 197887 -227326691 - L1PA8 LINE L1 -5 6167 4837 587 234 0 0 chr3 197917 198045 -227326533 - AluJo SINE Alu -178 134 7 1153 199 72 13 chr3 198061 198099 -227326479 - L1M4 LINE L1 -581 5597 5563 3508 22 0 2 chr3 198099 198546 -227326032 + L1PA4 LINE L1 5732 6177 0 1153 199 72 13 chr3 198546 198812 -227325766 - L1M4 LINE L1 -615 5563 5274 1557 230 0 7 chr3 198820 199124 -227325454 - AluJo SINE Alu -2 310 9 3285 89 6 2 chr3 199273 199756 -227324822 - L1P LINE L1 -4933 1213 729 * 25180 46 0 1 chr3 199755 203251 -227321327 + L1PA3 LINE L1 2079 5570 -585 2104 42 0 4 chr3 203351 203612 -227320966 + L1PA3 LINE L1 5895 6154 -1 10061 205 18 6 chr3 203612 206576 -227318002 + L1PA15 LINE L1 2815 5818 -347 419 218 0 10 chr3 206584 206685 -227317893 + L1P LINE L1 4066 4165 -1981 * 1198 223 12 80 chr3 206675 206795 -227317783 + L1MA9 LINE L1 5817 5944 -368 1697 171 29 6 chr3 206795 207089 -227317489 + L1PA15 LINE L1 5831 6152 -13 1198 223 12 80 chr3 207089 207457 -227317121 + L1MA9 LINE L1 5944 6272 -40 8271 194 44 46 chr3 207519 208623 -227315955 + L1MB1 LINE L1 2823 3929 -2239 1761 188 3 0 chr3 208623 208915 -227315663 + AluJb SINE Alu 7 299 -13 8271 194 44 46 chr3 208915 210785 -227313793 + L1MB1 LINE L1 3929 5799 -369 1400 203 30 36 chr3 210785 211086 -227313492 + AluJo SINE Alu 1 299 -3 8271 194 44 46 chr3 211086 211454 -227313124 + L1MB1 LINE L1 5799 6167 -1 1630 199 0 13 chr3 211730 212041 -227312537 - AluJb SINE Alu -3 309 3 1710 192 13 16 chr3 212047 212360 -227312218 - AluJo SINE Alu 0 312 1 237 132 0 0 chr3 212695 212733 -227311845 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 291 54 0 0 chr3 212732 212769 -227311809 + (GA)n Simple_repeat Simple_repeat 1 37 0 360 236 73 16 chr3 213001 213124 -227311454 + MIR SINE MIR 105 234 -28 423 330 124 57 chr3 214536 214972 -227309606 - L2 LINE L2 0 3272 2808 1820 161 16 3 chr3 215010 215315 -227309263 - MER1B DNA MER1_type 0 339 31 410 303 103 44 chr3 215363 215769 -227308809 - L2 LINE L2 -666 2648 2219 1052 323 89 19 chr3 216099 216570 -227308008 + L3 LINE CR1 1051 1554 -23 246 95 0 0 chr3 216644 216686 -227307892 + (T)n Simple_repeat Simple_repeat 1 42 0 1523 195 41 21 chr3 217267 217556 -227307022 + MSTB2 LTR MaLR 1 299 -158 2916 137 5 2 chr3 217556 218003 -227306575 + MER83 LTR ERV1 1 448 0 1523 195 41 21 chr3 218003 218051 -227306527 + MSTB2 LTR MaLR 299 345 -112 241 339 106 22 chr3 219061 219241 -227305337 + MIR SINE MIR 64 258 -4 2283 101 6 20 chr3 219933 220279 -227304299 + L1PA13 LINE L1 5822 6162 -1 32 43 0 0 chr3 220347 220393 -227304185 + AT_rich Low_complexity Low_complexity 1 46 0 224 231 31 0 chr3 220460 220525 -227304053 + (CAA)n Simple_repeat Simple_repeat 2 68 0 236 100 25 0 chr3 220781 220821 -227303757 + (TG)n Simple_repeat Simple_repeat 2 42 0 2047 173 69 6 chr3 221020 221458 -227303120 + MER31A LTR ERV1 3 531 -12 243 0 0 0 chr3 221460 221487 -227303091 + (T)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr3 222328 222353 -227302225 + AT_rich Low_complexity Low_complexity 1 25 0 408 279 149 13 chr3 222363 222517 -227302061 - MIR SINE MIR -42 220 46 577 146 0 176 chr3 222706 222871 -227301707 + AluJb SINE Alu 85 220 -92 23 0 0 0 chr3 222900 222923 -227301655 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 222952 222973 -227301605 + AT_rich Low_complexity Low_complexity 1 21 0 37682 67 22 1 chr3 223211 229221 -227295357 - L1PA5 LINE L1 -11 6143 3 541 177 31 0 chr3 229947 230043 -227294535 + FLAM_A SINE Alu 3 101 -41 2068 116 10 16 chr3 231830 232140 -227292438 - AluSq SINE Alu -5 308 1 2019 96 88 6 chr3 232142 232485 -227292093 - L1MA3 LINE L1 0 6305 5935 21219 171 28 23 chr3 232491 237680 -227286898 - L1PA10 LINE L1 -3 6480 1316 206 0 69 0 chr3 237680 237709 -227286869 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 21219 171 28 23 chr3 237709 237998 -227286580 - L1PA10 LINE L1 -5167 1316 1030 4059 149 18 73 chr3 237998 238829 -227285749 - LTR1 LTR ERV1 0 785 1 21219 171 28 23 chr3 238829 239729 -227284849 - L1PA10 LINE L1 -5453 1030 20 3995 125 0 2 chr3 239729 240369 -227284209 - L1MA3 LINE L1 -353 5952 5314 753 224 29 24 chr3 240914 241084 -227283494 + FRAM SINE Alu 1 164 -12 300 319 80 11 chr3 241452 241640 -227282938 + L2 LINE L2 2241 2441 -873 261 420 13 21 chr3 242047 242283 -227282295 - L2 LINE L2 -214 3058 2825 442 282 24 32 chr3 242451 242575 -227282003 - L2 LINE L2 -4 3268 3146 3307 207 32 10 chr3 242575 242822 -227281756 + L1MA7 LINE L1 5318 5558 -745 2022 215 99 72 chr3 242822 243626 -227280952 - LTR1B LTR ERV1 0 826 1 3307 207 32 10 chr3 243626 244275 -227280303 + L1MA7 LINE L1 5558 6293 -10 444 289 15 22 chr3 245209 245344 -227279234 + MIR3 SINE MIR 42 175 -33 1667 52 0 0 chr3 245766 245976 -227278602 - L1PA3 LINE L1 0 6155 5946 801 257 87 10 chr3 246131 246440 -227278138 - L1ME3A LINE L1 -315 5855 5523 13728 212 33 16 chr3 246776 247175 -227277403 + L1MA5 LINE L1 1747 2138 -5224 2001 155 0 0 chr3 247175 247466 -227277112 + AluSx SINE Alu 3 293 -19 13728 212 33 16 chr3 247466 248377 -227276201 + L1MA5 LINE L1 2138 3032 -4330 924 145 0 0 chr3 248377 248529 -227276049 + L1PA14 LINE L1 6009 6160 -1 13728 212 33 16 chr3 248529 252680 -227271898 + L1MA5 LINE L1 3032 7337 -25 22 88 0 0 chr3 252715 252772 -227271806 + AT_rich Low_complexity Low_complexity 1 57 0 1380 266 85 33 chr3 253690 254325 -227270253 - HAL1 LINE L1 0 2507 1840 * 1488 206 49 25 chr3 254320 254728 -227269850 - L1M4 LINE L1 -913 5233 4816 252 295 80 27 chr3 254863 254975 -227269603 + L2 LINE L2 3150 3267 -5 1650 184 14 102 chr3 255593 256093 -227268485 - L1M4 LINE L1 -1322 4824 4369 21 82 0 0 chr3 256148 256197 -227268381 + AT_rich Low_complexity Low_complexity 1 49 0 4433 245 73 15 chr3 256404 257239 -227267339 - L1M4 LINE L1 -1777 4369 3584 2256 54 7 0 chr3 257239 257567 -227267011 - AluY SINE Alu 0 332 3 4433 245 73 15 chr3 257567 258230 -227266348 - L1M4 LINE L1 -2562 3584 2783 989 270 42 46 chr3 258234 258760 -227265818 + L1ME3A LINE L1 4323 4846 -1300 521 178 51 0 chr3 258883 259001 -227265577 + L1MA8 LINE L1 6164 6287 -4 244 291 8 30 chr3 259030 259164 -227265414 + L1ME3A LINE L1 4963 5093 -1053 443 35 0 0 chr3 259175 259232 -227265346 - L1PA6 LINE L1 -5 6149 6093 228 222 0 0 chr3 260432 260504 -227264074 + T-rich Low_complexity Low_complexity 1 72 0 22827 189 14 28 chr3 260506 267048 -227257530 - L1PA10 LINE L1 0 6483 10 1365 294 48 53 chr3 267067 268148 -227256430 + L1ME3A LINE L1 5088 6162 -8 22 56 0 0 chr3 268303 268339 -227256239 + AT_rich Low_complexity Low_complexity 1 36 0 253 259 21 98 chr3 268377 268520 -227256058 + Charlie7 DNA MER1_type 463 594 -2018 2210 133 58 24 chr3 268573 268987 -227255591 - MSTA LTR MaLR 0 428 1 380 192 93 41 chr3 269118 269290 -227255288 + Charlie7 DNA MER1_type 2404 2584 -28 34 65 0 0 chr3 269398 269460 -227255118 + AT_rich Low_complexity Low_complexity 1 62 0 3493 159 53 9 chr3 269783 270476 -227254102 - L1MA8 LINE L1 -4 6287 5564 287 71 0 24 chr3 270476 270518 -227254060 - MLT2A1 LTR ERVL -2 451 411 304 193 50 25 chr3 270523 270684 -227253894 + (TTATA)n Simple_repeat Simple_repeat 4 168 0 2318 84 16 0 chr3 270684 270992 -227253586 - MLT2A1 LTR ERVL -131 313 1 41944 91 5 6 chr3 270992 276649 -227247929 - HERVL-A1 LTR ERVL 0 5654 1 2264 151 36 23 chr3 276649 277087 -227247491 - MLT2A1 LTR ERVL 0 444 1 2123 167 18 5 chr3 277090 277667 -227246911 - L1MA8 LINE L1 -725 5566 4981 21 36 0 0 chr3 277677 277705 -227246873 + AT_rich Low_complexity Low_complexity 1 28 0 12717 194 30 13 chr3 277705 280075 -227244503 - L1PB2 LINE L1 -7 6201 3740 2008 164 86 5 chr3 280075 280471 -227244107 - MSTA LTR MaLR 0 428 1 12717 194 30 13 chr3 280471 282144 -227242434 - L1PB2 LINE L1 -2468 3740 2096 1341 146 0 14 chr3 282149 282361 -227242217 + AluSq SINE Alu 89 297 -16 3071 175 40 3 chr3 282363 282970 -227241608 - L1PB2 LINE L1 -4157 2047 1419 2500 196 50 0 chr3 282980 283677 -227240901 - L1PB2 LINE L1 -4920 1284 551 453 364 12 0 chr3 283690 283852 -227240726 + MIR3 SINE MIR 45 208 0 1146 158 34 49 chr3 284628 284894 -227239684 + L1MA1 LINE L1 6037 6298 -4 189 295 21 32 chr3 285024 285119 -227239459 + L3b LINE CR1 1268 1361 -222 267 290 63 50 chr3 285468 285588 -227238990 + MIR3 SINE MIR 78 199 -9 453 171 0 0 chr3 286856 286932 -227237646 + L1P LINE L1 3525 3600 -2546 17190 170 32 14 chr3 286937 287406 -227237172 - L1M1 LINE L1 -4132 3433 2974 2147 128 0 0 chr3 287406 287704 -227236874 - AluSg SINE Alu -11 299 2 17190 170 32 14 chr3 287704 290451 -227234127 - L1M1 LINE L1 -4591 2974 37 562 387 6 0 chr3 290458 290773 -227233805 - L1MC4a LINE L1 -1979 5829 5513 1883 154 36 30 chr3 290818 291148 -227233430 + THE1B LTR MaLR 1 332 -32 1511 184 27 0 chr3 291306 291589 -227232989 + AluSx SINE Alu 15 304 0 591 196 108 6 chr3 291589 291755 -227232823 - L1MC2 LINE L1 -226 6118 5961 299 186 34 0 chr3 291774 291833 -227232745 - AluJ/FLAM SINE Alu -217 85 25 639 237 50 32 chr3 291850 292069 -227232509 - L1MC4 LINE L1 -13 8029 7807 14449 104 9 1 chr3 292305 294703 -227229875 - L1PA7 LINE L1 -3 6466 4088 336 64 0 0 chr3 294703 294750 -227229828 + (TTG)n Simple_repeat Simple_repeat 2 48 0 14449 104 9 1 chr3 294750 297059 -227227519 - L1PA7 LINE L1 -2381 4088 1671 24 32 0 0 chr3 297285 297316 -227227262 + AT_rich Low_complexity Low_complexity 1 31 0 457 318 24 16 chr3 297905 298157 -227226421 + L1ME LINE L1 4592 4845 -1301 364 272 127 13 chr3 298304 298462 -227226116 - L2 LINE L2 0 3313 3138 312 281 30 7 chr3 298521 298656 -227225922 + L1ME LINE L1 5691 5828 -334 435 327 42 0 chr3 298934 299099 -227225479 + MIR SINE MIR 20 191 -71 22 0 0 0 chr3 299139 299161 -227225417 + AT_rich Low_complexity Low_complexity 1 22 0 221 281 206 7 chr3 299161 299307 -227225271 + MIR SINE MIR 88 262 0 2089 123 7 3 chr3 300467 300760 -227223818 + AluSc SINE Alu 3 296 -13 2085 127 0 0 chr3 300767 301082 -227223496 + AluSx SINE Alu 1 315 0 1900 181 40 44 chr3 301164 301592 -227222986 + MSTB LTR MaLR 1 375 0 490 257 68 14 chr3 301842 301990 -227222588 + MIR3 SINE MIR 15 170 -38 251 73 0 0 chr3 301994 302035 -227222543 + L1PA6 LINE L1 6114 6154 0 208 286 189 51 chr3 302334 302509 -227222069 + L3 LINE CR1 1352 1550 -27 377 356 67 0 chr3 302994 303174 -227221404 + MIR SINE MIR 69 260 -2 208 139 0 0 chr3 303177 303213 -227221365 + (T)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr3 303233 303263 -227221315 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 26396 76 5 2 chr3 303268 307805 -227216773 - L1PA6 LINE L1 -1 6153 1608 4878 168 10 29 chr3 307860 309254 -227215324 + L1P LINE L1 8 1536 -4610 348 142 44 0 chr3 309288 309364 -227215214 - L1MA4A LINE L1 -185 6820 6738 985 47 0 0 chr3 309382 309510 -227215068 + L1P LINE L1 2918 3045 -3101 * 7265 81 2 2 chr3 309503 310560 -227214018 - L1P LINE L1 -3219 2927 1871 6665 234 55 9 chr3 310556 314458 -227210120 - L1MA4A LINE L1 -256 6749 2635 * 2439 171 13 19 chr3 314458 314919 -227209659 - LTR22A LTR ERVK 0 458 1 11441 135 2 5 chr3 314920 316883 -227207695 - HERVK22 LTR ERVK -1 6836 3188 9943 122 4 1 chr3 316889 318385 -227206193 - HERVK22 LTR ERVK -3193 3644 2144 5777 118 22 14 chr3 318385 318733 -227205845 - HERVK22 LTR ERVK -5902 935 591 2697 26 0 0 chr3 318733 319040 -227205538 - AluYb8 SINE Alu -11 307 1 5777 118 22 14 chr3 319040 319617 -227204961 - HERVK22 LTR ERVK -6246 591 3 2439 167 31 22 chr3 319619 320069 -227204509 - LTR22A LTR ERVK 0 458 5 3504 196 36 13 chr3 320072 320925 -227203653 - L1MA4A LINE L1 -4209 2640 1768 23 33 0 0 chr3 321019 321049 -227203529 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 321082 321114 -227203464 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr3 321184 321219 -227203359 + AT_rich Low_complexity Low_complexity 1 35 0 285 229 84 0 chr3 321308 321391 -227203187 - MIR SINE MIR -109 153 64 180 0 0 0 chr3 321731 321751 -227202827 + (CA)n Simple_repeat Simple_repeat 2 21 0 205 260 123 68 chr3 322269 322415 -227202163 - MER5A DNA MER1_type -1 188 35 543 354 14 7 chr3 322927 323071 -227201507 - MER91A DNA MER1_type -1 195 51 197 340 128 0 chr3 323196 323290 -227201288 - L2 LINE L2 -9 3263 3158 10429 150 35 5 chr3 323499 325351 -227199227 + Tigger1 DNA MER2_type 2 1907 -511 259 203 0 31 chr3 325360 325424 -227199154 + (CATA)n Simple_repeat Simple_repeat 2 63 0 435 163 0 0 chr3 325426 325506 -227199072 + Tigger1 DNA MER2_type 1896 1975 -443 10575 218 28 35 chr3 325506 330453 -227194125 + L1PA15-16 LINE L1 8 4692 -2157 5871 132 1 5 chr3 330454 331425 -227193153 + L1P LINE L1 3560 4526 -1620 1699 132 3 0 chr3 331423 331710 -227192868 + L1P LINE L1 4869 5156 -990 * 15789 133 7 8 chr3 331720 333552 -227191026 - L1P LINE L1 -1119 5027 3200 1526 97 9 44 chr3 333552 333779 -227190799 - AluY SINE Alu -9 302 84 15789 133 7 8 chr3 333779 334683 -227189895 - L1P LINE L1 -2946 3200 2296 625 261 61 6 chr3 334676 334856 -227189722 + L1M1 LINE L1 161 350 -7215 * 11492 196 35 9 chr3 334965 337285 -227187293 + L1M1 LINE L1 298 2677 -4888 7514 31 1 3 chr3 337286 338655 -227185923 + L1PA4 LINE L1 4789 6155 0 2388 155 32 0 chr3 338657 339095 -227185483 + Tigger1 DNA MER2_type 1966 2417 -1 1551 257 89 67 chr3 339752 340518 -227184060 - L2 LINE L2 0 3313 2513 642 154 83 6 chr3 340528 340684 -227183894 + L1M4 LINE L1 5180 5347 -799 2709 190 6 2 chr3 340698 341204 -227183374 + L1PA10 LINE L1 1 508 -5367 2324 183 15 28 chr3 341204 341742 -227182836 + L1PA10 LINE L1 717 1274 -4734 26400 74 5 1 chr3 341800 347925 -227176653 + L1PA5 LINE L1 11 6154 0 203 0 37 0 chr3 347972 347999 -227176579 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 23919 151 14 9 chr3 348013 348289 -227176289 + L1PA10 LINE L1 1311 1584 -4899 840 104 16 0 chr3 348289 348414 -227176164 + L1PA5 LINE L1 6020 6146 -8 23919 151 14 9 chr3 348414 350820 -227173758 + L1PA10 LINE L1 1584 3978 -2505 462 18 0 0 chr3 350820 350875 -227173703 + (CA)n Simple_repeat Simple_repeat 2 56 0 23919 151 14 9 chr3 350875 353339 -227171239 + L1PA10 LINE L1 3978 6473 -10 322 26 105 0 chr3 353339 353415 -227171163 + (TA)n Simple_repeat Simple_repeat 2 85 0 2429 222 65 9 chr3 353418 354184 -227170394 + L1ME1 LINE L1 5330 6160 -6 2177 254 35 5 chr3 354201 354779 -227169799 - L2 LINE L2 -793 2521 1927 1941 96 4 46 chr3 355283 355563 -227169015 + AluSc SINE Alu 3 270 -39 278 65 0 22 chr3 355575 355621 -227168957 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1930 184 0 48 chr3 355621 355997 -227168581 + MLT1B LTR MaLR 33 390 0 563 257 14 35 chr3 356507 356651 -227167927 - MIR3 SINE MIR -52 156 16 445 329 74 25 chr3 356721 356964 -227167614 - MIR SINE MIR 0 262 8 2668 215 77 10 chr3 357052 357674 -227166904 + L1MDa LINE L1 31 694 -5846 1455 164 0 33 chr3 357680 357984 -227166594 + L1 LINE L1 4317 4610 -1536 463 248 94 0 chr3 357987 358104 -227166474 + FLAM_C SINE Alu 1 128 -15 191 272 130 53 chr3 358422 358591 -227165987 + L2 LINE L2 3130 3311 -2 6468 68 4 71 chr3 359000 360154 -227164424 + L1PA8 LINE L1 5083 6170 -2 2970 246 22 22 chr3 360168 361211 -227163367 - L1MB7 LINE L1 -16 6168 5127 5601 25 28 0 chr3 361211 361889 -227162689 - L1PA4 LINE L1 -2 6153 5457 2970 246 22 22 chr3 361889 362451 -227162127 - L1MB7 LINE L1 -1057 5127 4566 396 189 0 0 chr3 362451 362525 -227162053 - L1MD3 LINE L1 -190 7805 7732 * 801 248 38 17 chr3 362522 362952 -227161626 - L1MEc LINE L1 -4259 2137 1655 442 218 0 0 chr3 362961 363048 -227161530 + MER54B LTR ERVL 701 787 -6 361 324 85 0 chr3 463089 463265 -227061313 - L1ME4a LINE L1 -206 5915 5725 297 301 130 21 chr3 466532 466771 -227057807 - MLT1J LTR MaLR -19 492 228 201 161 18 71 chr3 467327 467383 -227057195 + L2 LINE L2 2507 2559 -755 1104 289 43 109 chr3 467833 469046 -227055532 - L2 LINE L2 -2 3311 2176 1081 182 14 5 chr3 469046 469260 -227055318 - MER58A DNA MER1_type 0 224 9 190 294 119 16 chr3 469271 469397 -227055181 - L2 LINE L2 -1135 2179 2041 366 307 26 9 chr3 469462 469576 -227055002 - MIR3 SINE MIR -6 202 87 339 300 44 128 chr3 469718 469905 -227054673 - L2 LINE L2 -3 3269 3111 1508 186 95 23 chr3 469905 470254 -227054324 + MLT1A2 LTR MaLR 1 374 0 339 300 44 128 chr3 470254 470339 -227054239 - L2 LINE L2 -161 3111 3020 721 292 4 30 chr3 470771 471007 -227053571 - MIR SINE MIR -10 252 23 674 329 44 17 chr3 471226 471570 -227053008 - L2 LINE L2 -766 2548 2196 23 33 0 0 chr3 471811 471841 -227052737 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr3 472509 472541 -227052037 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2122 97 4 0 chr3 472547 472825 -227051753 - AluSg SINE Alu -31 279 1 233 326 0 0 chr3 473035 473127 -227051451 - MLT1H LTR MaLR -4 545 454 322 247 22 22 chr3 473265 473354 -227051224 - MLT1H LTR MaLR -325 224 136 2514 211 3 63 chr3 475388 475977 -227048601 + MLT2B3 LTR ERVL 1 554 0 798 264 111 97 chr3 476016 476708 -227047870 - MER21B LTR ERV1 -150 713 12 219 183 39 19 chr3 476730 476834 -227047744 + (TA)n Simple_repeat Simple_repeat 1 106 0 379 270 0 0 chr3 476894 476983 -227047595 - Tigger7 DNA MER2_type 0 2487 2399 315 119 15 30 chr3 477922 477989 -227046589 + Alu SINE Alu 235 300 0 1810 152 7 0 chr3 478074 478351 -227046227 - AluSx SINE Alu -33 279 1 429 318 68 36 chr3 478509 478729 -227045849 + MIR SINE MIR 22 248 -14 943 331 78 18 chr3 479765 480412 -227044166 - L2 LINE L2 -4 3309 2610 1363 210 57 20 chr3 480412 480764 -227043814 - MLT1A1 LTR MaLR 0 365 1 943 331 78 18 chr3 480764 480931 -227043647 - L2 LINE L2 -703 2610 2455 349 217 29 0 chr3 481127 481196 -227043382 - MER58 DNA MER1_type 0 2420 2350 242 348 34 0 chr3 482326 482444 -227042134 - MIR SINE MIR -2 260 139 683 288 23 0 chr3 482479 482656 -227041922 + MIR SINE MIR 56 236 -26 1350 176 146 5 chr3 483059 483428 -227041150 + MSTB1 LTR MaLR 8 428 -4 601 211 0 23 chr3 484561 484694 -227039884 + MER5A DNA MER1_type 1 130 -59 224 233 16 16 chr3 485183 485245 -227039333 + MIR SINE MIR 93 147 -61 784 248 70 33 chr3 485255 485497 -227039081 - MIR SINE MIR -10 252 2 1893 209 76 15 chr3 485679 486153 -227038425 - MLT1D LTR MaLR 0 505 3 825 200 0 0 chr3 487074 487214 -227037364 + FRAM SINE Alu 18 157 -19 370 357 7 29 chr3 487531 487671 -227036907 - L2 LINE L2 -2 3270 3134 273 293 113 0 chr3 487700 487806 -227036772 - MIR SINE MIR -2 260 143 426 267 14 34 chr3 489461 489607 -227034971 + Charlie8 DNA MER1_type 1 143 -2274 372 306 200 0 chr3 491440 491600 -227032978 + MIR3 SINE MIR 16 207 -1 679 254 20 5 chr3 492197 492398 -227032180 - MER3 DNA MER1_type 0 209 6 316 264 231 0 chr3 492548 492669 -227031909 - MIR SINE MIR -91 171 23 186 171 0 0 chr3 492742 492783 -227031795 + (CAT)n Simple_repeat Simple_repeat 2 42 0 256 287 35 61 chr3 493266 493381 -227031197 - L2 LINE L2 0 3272 3161 604 251 94 21 chr3 493435 493626 -227030952 + MER63A DNA MER1_type 1 205 -5 190 130 19 37 chr3 493628 493682 -227030896 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 181 132 19 19 chr3 493708 493761 -227030817 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 317 187 9 17 chr3 493811 494031 -227030547 + AluJo SINE Alu 16 295 -6 290 303 98 16 chr3 494136 494258 -227030320 + MIR SINE MIR 110 241 -21 329 380 25 13 chr3 494326 494484 -227030094 - L2 LINE L2 -177 3095 2936 617 343 58 29 chr3 496442 496818 -227027760 + L2 LINE L2 2841 3227 -86 1895 228 82 8 chr3 496875 497376 -227027202 + MLT1F LTR MaLR 3 540 -2 750 255 27 0 chr3 498871 499059 -227025519 - MER20 DNA MER1_type 0 219 27 2145 201 14 14 chr3 499149 499577 -227025001 - MSTA LTR MaLR 0 428 1 342 331 35 7 chr3 499603 499748 -227024830 - MIR3 SINE MIR -5 203 55 612 273 67 29 chr3 500132 500341 -227024237 + MIR SINE MIR 39 255 -7 23 54 0 0 chr3 501312 501349 -227023229 + AT_rich Low_complexity Low_complexity 1 37 0 217 256 133 44 chr3 501517 501607 -227022971 + MIR3 SINE MIR 3 100 -108 22 0 0 0 chr3 501930 501952 -227022626 + AT_rich Low_complexity Low_complexity 1 22 0 1092 182 47 14 chr3 502583 502941 -227021637 - MER61B LTR ERV1 -36 389 1 24 32 0 0 chr3 503084 503115 -227021463 + AT_rich Low_complexity Low_complexity 1 31 0 1521 168 29 59 chr3 503281 503656 -227020922 + MLT2D LTR ERVL 3 366 -48 388 104 13 13 chr3 503656 503704 -227020874 + (TC)n Simple_repeat Simple_repeat 1 51 -26 279 0 0 0 chr3 503704 503735 -227020843 + (TG)n Simple_repeat Simple_repeat 2 32 0 388 104 13 13 chr3 503735 503763 -227020815 + (TC)n Simple_repeat Simple_repeat 50 77 0 227 114 0 0 chr3 503769 503804 -227020774 + MLT2D LTR ERVL 430 464 0 1595 184 150 36 chr3 504017 504369 -227020209 - MLT1D LTR MaLR -8 497 82 4011 80 30 2 chr3 504369 504908 -227019670 + MER41A LTR ERV1 1 554 0 1595 184 150 36 chr3 504908 505001 -227019577 - MLT1D LTR MaLR -423 82 1 189 290 11 75 chr3 505224 505317 -227019261 - L2 LINE L2 -54 3259 3173 320 327 79 0 chr3 505327 505428 -227019150 - L2 LINE L2 -774 2540 2432 248 192 68 27 chr3 505544 505617 -227018961 + L1M3 LINE L1 5367 5442 -729 462 350 53 31 chr3 505714 506034 -227018544 + L1ME LINE L1 5477 5803 -318 768 345 75 18 chr3 506491 506891 -227017687 + L3 LINE CR1 904 1326 -251 354 301 44 65 chr3 507023 507408 -227017170 + MLT1J1 LTR MaLR 50 426 -20 351 335 197 0 chr3 507557 507775 -227016803 + L3 LINE CR1 1316 1576 -1 1061 314 133 13 chr3 508575 509325 -227015253 - L2 LINE L2 0 3313 2486 2550 291 95 34 chr3 509381 510035 -227014543 - L2 LINE L2 -2015 1299 686 2323 100 3 0 chr3 510035 510345 -227014233 + AluY SINE Alu 1 311 0 2550 291 95 34 chr3 510345 510883 -227013695 - L2 LINE L2 -2628 686 34 357 213 43 156 chr3 511484 511625 -227012953 - L2 LINE L2 -1 3312 3188 985 204 88 4 chr3 512005 512255 -227012323 - ORSL DNA AcHobo -3 272 2 186 189 0 0 chr3 514347 514384 -227010194 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 311 285 74 104 chr3 514384 514710 -227009868 - L2 LINE L2 -2 3311 2996 232 237 66 26 chr3 515201 515277 -227009301 - MIR SINE MIR -16 246 168 517 205 192 26 chr3 515281 515432 -227009146 + MER5A DNA MER1_type 9 184 -5 355 354 9 0 chr3 515461 515574 -227009004 - MIR SINE MIR -116 146 33 1526 211 0 4 chr3 515600 515879 -227008699 - AluJb SINE Alu -29 283 6 1170 121 156 0 chr3 515943 516142 -227008436 - MER30 DNA MER1_type 0 230 1 1597 154 130 17 chr3 516625 516970 -227007608 + MLT1B LTR MaLR 5 388 -2 276 100 0 0 chr3 517125 517165 -227007413 + (TG)n Simple_repeat Simple_repeat 2 41 0 1526 214 128 49 chr3 518478 518604 -227005974 - L1MCb LINE L1 -4851 1194 1079 1969 144 0 10 chr3 518604 518759 -227005819 - AluSx SINE Alu -24 288 136 2095 119 20 3 chr3 518759 519054 -227005524 - AluSx SINE Alu -12 300 1 1969 144 0 10 chr3 519054 519189 -227005389 - AluSx SINE Alu -176 136 1 1526 214 128 49 chr3 519189 519846 -227004732 - L1MCb LINE L1 -4966 1079 619 198 91 0 0 chr3 519846 519879 -227004699 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 307 240 58 19 chr3 519884 519988 -227004590 - LTR19C LTR ERV1 0 779 672 915 93 0 0 chr3 519988 520106 -227004472 + AluSg1 SINE Alu 1 118 -191 1860 206 47 67 chr3 520136 520670 -227003908 - LTR9 LTR ERV1 -89 523 1 312 146 0 0 chr3 520670 520718 -227003860 - Alu SINE Alu -20 282 235 1034 296 25 46 chr3 520903 521160 -227003418 - L1MCb LINE L1 -5475 570 324 2130 52 0 0 chr3 521160 521429 -227003149 + AluY SINE Alu 37 305 -6 1034 296 25 46 chr3 521429 521610 -227002968 - L1MCb LINE L1 -5721 324 141 273 228 63 47 chr3 521610 521737 -227002841 - L1MCb LINE L1 -6296 268 140 658 243 17 65 chr3 522089 522443 -227002135 + MER34B LTR ERV1 4 381 -184 1355 173 9 0 chr3 522448 522673 -227001905 - AluJo SINE Alu -2 310 84 356 238 85 43 chr3 522688 522816 -227001762 + MER34B LTR ERV1 395 533 -32 1387 222 73 9 chr3 522816 523159 -227001419 - MLT1A1 LTR MaLR 0 365 1 356 238 85 43 chr3 523159 523194 -227001384 + MER34B LTR ERV1 533 565 0 192 276 92 72 chr3 523320 523472 -227001106 - MIR SINE MIR -77 185 31 1712 215 66 17 chr3 523595 524065 -227000513 - MLT1D LTR MaLR -8 497 5 321 47 0 0 chr3 524068 524111 -227000467 + (GA)n Simple_repeat Simple_repeat 2 44 0 340 171 14 0 chr3 524599 524669 -226999909 - MER116 DNA Mariner -9 71 1 236 302 23 0 chr3 525538 525624 -226998954 + (TATG)n Simple_repeat Simple_repeat 1 88 0 * 293 294 5 53 chr3 525561 525748 -226998830 + (TG)n Simple_repeat Simple_repeat 2 179 0 375 307 12 18 chr3 525797 525960 -226998618 + (TG)n Simple_repeat Simple_repeat 1 162 0 333 174 0 0 chr3 525996 526065 -226998513 + (TG)n Simple_repeat Simple_repeat 1 69 0 21 36 0 0 chr3 527110 527138 -226997440 + AT_rich Low_complexity Low_complexity 1 28 0 2572 108 3 18 chr3 530114 530495 -226994083 + THE1C LTR MaLR 1 375 0 759 284 102 0 chr3 531222 531458 -226993120 + MIR SINE MIR 3 262 0 230 421 86 17 chr3 531461 531694 -226992884 - L2 LINE L2 -15 3257 3009 757 136 116 61 chr3 531714 531912 -226992666 - L1MA6 LINE L1 -271 6029 5821 389 222 30 30 chr3 532124 532259 -226992319 + MER69 DNA AcHobo 2380 2514 -12 2478 56 3 0 chr3 532686 532989 -226991589 - AluY SINE Alu -7 304 1 4514 72 7 0 chr3 533017 533603 -226990975 + LTR10C LTR ERV1 1 590 -1 25 65 0 0 chr3 533840 533886 -226990692 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 534636 534660 -226989918 + AT_rich Low_complexity Low_complexity 1 24 0 34 84 0 0 chr3 534880 534963 -226989615 + AT_rich Low_complexity Low_complexity 1 83 0 2602 175 58 0 chr3 535877 536363 -226988215 + Tigger7 DNA MER2_type 1 514 -1973 541 140 0 56 chr3 536352 536459 -226988119 + Tigger7 DNA MER2_type 2391 2491 0 * 435 197 205 0 chr3 536540 536657 -226987921 + MIR SINE MIR 49 189 -73 229 256 68 105 chr3 536741 536874 -226987704 + MIR SINE MIR 103 230 -32 21 36 0 0 chr3 537061 537089 -226987489 + AT_rich Low_complexity Low_complexity 1 28 0 459 256 56 0 chr3 538232 538392 -226986186 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 805 216 125 4 chr3 539082 539314 -226985264 - MIR SINE MIR -1 261 2 285 270 11 11 chr3 539456 539545 -226985033 + MIR SINE MIR 76 164 -98 1923 195 158 27 chr3 539545 540239 -226984339 + LTR48 LTR ERV1 1 707 0 423 274 0 0 chr3 540239 540341 -226984237 + MIR SINE MIR 161 262 0 331 297 86 38 chr3 540658 540971 -226983607 + L1ME4a LINE L1 5726 6053 -68 1530 158 75 0 chr3 541641 541919 -226982659 + MSTB1 LTR MaLR 134 432 0 358 312 85 0 chr3 541922 542063 -226982515 + MIR SINE MIR 108 260 -2 1385 233 34 79 chr3 542068 542597 -226981981 + MLT1D LTR MaLR 1 505 0 1671 163 3 14 chr3 542599 542906 -226981672 - AluJb SINE Alu 0 306 3 3386 222 11 50 chr3 542923 543815 -226980763 + MLT1D-int LTR MaLR 27 883 -488 1146 202 125 35 chr3 543902 544189 -226980389 + MLT1D-int LTR MaLR 880 1192 -179 1161 238 18 28 chr3 544279 544565 -226980013 + MLT1C LTR MaLR 185 467 0 261 368 30 30 chr3 545880 546013 -226978565 - MIR3 SINE MIR -70 138 6 303 299 64 45 chr3 546986 547067 -226977511 - L2 LINE L2 -7 3265 3187 2344 141 8 0 chr3 547067 547428 -226977150 + THE1B LTR MaLR 1 364 0 303 299 64 45 chr3 547428 547503 -226977075 - L2 LINE L2 -85 3187 3106 287 365 42 18 chr3 547547 547714 -226976864 - MIR SINE MIR -72 190 20 283 224 35 0 chr3 548295 548353 -226976225 + MER91C DNA MER1_type 64 123 -17 219 324 95 0 chr3 548438 548512 -226976066 + MIR3 SINE MIR 82 162 -46 750 161 0 60 chr3 548650 548799 -226975779 - FLAM_C SINE Alu -3 140 1 600 79 20 10 chr3 549359 549460 -226975118 + (GAA)n Simple_repeat Simple_repeat 1 102 0 889 211 0 0 chr3 549461 549627 -226974951 + FRAM SINE Alu 1 158 -18 283 338 63 24 chr3 549719 549926 -226974652 + MIR SINE MIR 20 234 -28 449 296 31 25 chr3 550503 550662 -226973916 + MIR SINE MIR 48 207 -55 1848 140 11 11 chr3 550677 550962 -226973616 - AluJb SINE Alu -27 285 1 21 57 0 0 chr3 551125 551160 -226973418 + AT_rich Low_complexity Low_complexity 1 35 0 293 256 144 38 chr3 552054 552214 -226972364 + MIR SINE MIR 60 236 -26 282 301 40 45 chr3 552294 552493 -226972085 - L1ME4a LINE L1 -192 5929 5732 189 271 235 0 chr3 552660 552745 -226971833 + MIR3 SINE MIR 100 204 -4 338 321 24 97 chr3 553038 553577 -226971001 + L2 LINE L2 2813 3312 -1 371 98 0 0 chr3 554252 554303 -226970275 + MADE1 DNA Mariner 1 51 -29 230 157 59 0 chr3 555409 555460 -226969118 - L1P LINE L1 -5516 630 577 822 147 0 0 chr3 555880 556009 -226968569 - FLAM_C SINE Alu -3 130 2 2972 131 9 6 chr3 556282 556748 -226967830 - MER41B LTR ERV1 0 635 169 1067 114 12 0 chr3 556850 557016 -226967562 - MER41B LTR ERV1 -467 168 1 240 283 87 0 chr3 557160 557252 -226967326 + MIR SINE MIR 71 170 -92 1800 161 0 3 chr3 558082 558368 -226966210 + MER49 LTR ERV1 1 285 -638 1159 236 56 25 chr3 558443 558727 -226965851 + MER4D LTR ERV1 555 847 -56 1570 149 11 48 chr3 558739 559079 -226965499 - MER61C LTR ERV1 -6 428 1 365 261 43 58 chr3 559553 559691 -226964887 - MLT1L LTR MaLR -42 573 438 192 234 16 121 chr3 560938 561062 -226963516 - MIR SINE MIR -11 251 141 5842 223 92 16 chr3 561242 563170 -226961408 - L1MDa LINE L1 -4277 2263 14 193 260 26 65 chr3 563171 563248 -226961330 - MER5A DNA MER1_type -114 75 2 * 261 261 22 97 chr3 563248 563378 -226961200 - MIR SINE MIR -69 139 20 204 327 45 36 chr3 564246 564356 -226960222 - L2 LINE L2 -6 3266 3156 261 349 0 0 chr3 564507 564590 -226959988 - L2 LINE L2 0 3272 3190 1972 114 14 21 chr3 565308 565598 -226958980 - AluSc SINE Alu -21 288 1 968 263 26 4 chr3 565804 566032 -226958546 + MIR SINE MIR 20 252 -10 232 289 12 60 chr3 566244 566327 -226958251 - MIR SINE MIR -109 99 21 233 355 13 0 chr3 566473 566549 -226958029 - L2 LINE L2 -14 3258 3182 22 0 0 0 chr3 566564 566586 -226957992 + AT_rich Low_complexity Low_complexity 1 22 0 1968 140 4 0 chr3 568948 569226 -226955352 + AluSx SINE Alu 1 279 -33 1467 224 7 0 chr3 569326 569607 -226954971 - Tigger7 DNA MER2_type -450 283 1 534 308 50 61 chr3 569761 570157 -226954421 - MER68 LTR ERV1 -20 542 151 471 366 98 17 chr3 570702 571050 -226953528 + L2 LINE L2 2804 3201 -112 261 0 0 0 chr3 571050 571079 -226953499 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 471 366 98 17 chr3 571079 571202 -226953376 + L2 LINE L2 3201 3313 0 201 381 48 24 chr3 571342 571510 -226953068 + MER5A DNA MER1_type 3 174 -15 1939 178 61 16 chr3 571618 572044 -226952534 - MER65A LTR ERV1 0 445 1 206 298 48 96 chr3 572131 572251 -226952327 + MIR SINE MIR 57 166 -96 5902 103 12 0 chr3 572251 573158 -226951420 - L1PA13 LINE L1 -3 6160 5230 206 298 48 96 chr3 573158 573225 -226951353 + MIR SINE MIR 166 235 -27 288 296 71 10 chr3 573587 573685 -226950893 + L2 LINE L2 3210 3313 0 233 329 0 47 chr3 573927 574012 -226950566 - L2 LINE L2 -42 3271 3191 1922 239 123 3 chr3 575386 575977 -226948601 - L1MC4 LINE L1 -143 7899 7238 2089 241 76 3 chr3 575986 576562 -226948016 - L1MC4 LINE L1 -966 7076 6459 207 204 0 41 chr3 576880 576929 -226947649 + GA-rich Low_complexity Low_complexity 5 51 0 25 0 0 0 chr3 577753 577778 -226946800 + AT_rich Low_complexity Low_complexity 1 25 0 1778 123 40 7 chr3 578215 578525 -226946053 - AluSx SINE Alu 0 319 1 254 273 225 23 chr3 579557 579667 -226944911 + MIR SINE MIR 36 171 -37 418 303 82 26 chr3 579757 579952 -226944626 + MIR SINE MIR 55 260 -2 29 0 0 0 chr3 580502 580531 -226944047 + AT_rich Low_complexity Low_complexity 1 29 0 566 289 142 0 chr3 580691 580888 -226943690 - MIR SINE MIR -8 254 30 580 292 53 19 chr3 582328 582537 -226942041 - MIR SINE MIR -1 261 46 201 347 31 10 chr3 583063 583161 -226941417 - L3 LINE CR1 -144 1433 1334 1918 233 93 14 chr3 583165 583650 -226940928 + MLT1E LTR MaLR 67 589 -4 227 129 0 0 chr3 583753 583784 -226940794 - L2 LINE L2 -20 3293 3263 4981 94 6 1 chr3 583827 584528 -226940050 - L1PA10 LINE L1 -12 6156 5453 346 314 96 13 chr3 584534 584690 -226939888 - MIR SINE MIR -48 214 46 679 258 0 12 chr3 584771 584934 -226939644 + AluJb SINE Alu 129 289 -23 627 235 37 31 chr3 585171 585333 -226939245 - AluJb SINE Alu -1 311 149 250 285 0 0 chr3 585358 585435 -226939143 - FRAM/FAM SINE Alu -94 81 14 234 206 0 0 chr3 586632 586695 -226937883 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 587156 587181 -226937397 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 589236 589344 -226935234 + MIR SINE MIR 34 139 -123 21 57 0 0 chr3 589313 589348 -226935230 + AT_rich Low_complexity Low_complexity 1 35 0 * 22 0 0 0 chr3 589911 589933 -226934645 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 590245 590554 -226934024 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 592250 592556 -226932022 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 592853 592921 -226931657 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 593459 593519 -226931059 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 593663 593689 -226930889 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 593693 593832 -226930746 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 593977 594159 -226930419 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 594873 594950 -226929628 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 594952 595012 -226929566 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 595546 595711 -226928867 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 595760 596124 -226928454 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 596248 596477 -226928101 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 597319 597637 -226926941 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 597890 598111 -226926467 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 598262 598297 -226926281 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 598297 599682 -226924896 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 600854 600885 -226923693 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 600993 601309 -226923269 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 601346 601377 -226923201 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 603981 604131 -226920447 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 607137 607306 -226917272 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 608553 608653 -226915925 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 608653 608923 -226915655 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 608923 609406 -226915172 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 609581 609824 -226914754 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 609991 610131 -226914447 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 610178 610307 -226914271 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 611041 611081 -226913497 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 611666 611821 -226912757 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 612291 612488 -226912090 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 612584 612710 -226911868 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 612720 612932 -226911646 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 613187 613253 -226911325 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 613254 613626 -226910952 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 615142 615355 -226909223 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 615412 615514 -226909064 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 615807 616022 -226908556 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 616022 616331 -226908247 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 616331 616553 -226908025 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 617122 617533 -226907045 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 617614 617900 -226906678 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 617922 618018 -226906560 + (TG)n Simple_repeat Simple_repeat 1 95 0 358 255 167 36 chr3 618219 618411 -226906167 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 618462 618595 -226905983 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 618663 618964 -226905614 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 619986 620060 -226904518 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 620145 620329 -226904249 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 621263 621563 -226903015 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 623741 623788 -226900790 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 623827 624041 -226900537 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 626931 627212 -226897366 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 627212 627259 -226897319 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 628221 628505 -226896073 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 629269 629772 -226894806 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 629874 629965 -226894613 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 629980 630125 -226894453 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 631477 631839 -226892739 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 632499 632782 -226891796 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 633764 633912 -226890666 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 634520 634541 -226890037 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 634578 634638 -226889940 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 634750 634804 -226889774 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 634853 634898 -226889680 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 635287 635596 -226888982 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 635596 635822 -226888756 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 637952 637973 -226886605 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 639558 639623 -226884955 + (CA)n Simple_repeat Simple_repeat 2 68 0 703 270 47 9 chr3 639673 639884 -226884694 + MER20 DNA MER1_type 1 219 0 286 170 0 0 chr3 640168 640221 -226884357 - L1M4 LINE L1 -3779 2367 2315 2361 110 0 0 chr3 640239 640539 -226884039 - AluSx SINE Alu -12 300 1 280 322 34 34 chr3 640922 641071 -226883507 + L2 LINE L2 3164 3312 -1 1961 135 7 0 chr3 641125 641413 -226883165 - AluSx SINE Alu -22 290 1 2168 174 40 124 chr3 641496 641513 -226883065 + LTR8A LTR ERV1 34 51 -676 2022 183 53 12 chr3 641513 641924 -226882654 - MSTA LTR MaLR 0 428 1 2168 174 40 124 chr3 641924 642664 -226881914 + LTR8A LTR ERV1 51 727 0 208 250 29 15 chr3 642739 642807 -226881771 - MIR SINE MIR -64 198 130 792 233 26 48 chr3 643106 643376 -226881202 + MLT1D LTR MaLR 13 276 -229 258 284 69 9 chr3 643389 643505 -226881073 + MER34 LTR ERV1 11 133 -409 1001 227 108 31 chr3 643507 643945 -226880633 + LTR29 LTR ERV1 160 595 0 826 206 110 10 chr3 643945 644154 -226880424 + MLT1D LTR MaLR 276 505 0 2401 128 25 32 chr3 644952 645383 -226879195 - MER4E LTR ERV1 -8 771 344 344 344 50 17 chr3 645384 645564 -226879014 - L1ME LINE L1 -505 5616 5431 958 154 11 69 chr3 645569 645654 -226878924 - FAM SINE Alu -156 165 94 1111 94 5 80 chr3 645654 645855 -226878723 - MER30B DNA MER1_type -4 186 1 958 154 11 69 chr3 645855 645944 -226878634 - FAM SINE Alu -227 94 1 900 235 145 9 chr3 645970 646302 -226878276 - L1ME1 LINE L1 -8 6158 5782 248 246 40 48 chr3 646311 646406 -226878172 - L1M3 LINE L1 -729 5442 5347 4670 97 17 38 chr3 646406 647093 -226877485 - L1PA13 LINE L1 0 6163 5492 2266 71 7 23 chr3 647093 647401 -226877177 - AluY SINE Alu -8 303 1 4670 97 17 38 chr3 647401 647474 -226877104 - L1PA13 LINE L1 -671 5492 5419 248 246 40 48 chr3 647474 647504 -226877074 - L1M3 LINE L1 -824 5347 5318 350 303 212 32 chr3 648445 648947 -226875631 + L2 LINE L2 2703 3313 0 2878 153 70 23 chr3 650588 651203 -226873375 - L1MA6 LINE L1 -5 6295 5652 243 0 0 0 chr3 651282 651309 -226873269 + (TG)n Simple_repeat Simple_repeat 1 27 0 689 299 51 0 chr3 653040 653394 -226871184 - MER113 DNA MER1_type? -119 402 31 877 248 40 43 chr3 655691 656038 -226868540 + MLT1H1 LTR MaLR 208 553 -2 1524 84 14 0 chr3 656488 656701 -226867877 + L1PA5 LINE L1 5939 6154 0 27 0 0 0 chr3 656818 656845 -226867733 + AT_rich Low_complexity Low_complexity 1 27 0 296 252 19 37 chr3 658047 658154 -226866424 - MIR SINE MIR -46 216 112 1086 137 29 78 chr3 659580 659784 -226864794 - AluJo SINE Alu -83 229 36 2218 94 14 0 chr3 659794 660080 -226864498 - AluSx SINE Alu -21 291 2 349 270 67 79 chr3 660267 660443 -226864135 + MIR SINE MIR 12 185 -77 255 173 0 0 chr3 660587 660639 -226863939 + (CA)n Simple_repeat Simple_repeat 1 52 0 1755 184 0 34 chr3 660853 661174 -226863404 + AluJo SINE Alu 1 310 -2 195 294 73 46 chr3 661299 661408 -226863170 + MIR SINE MIR 95 206 -56 290 270 22 11 chr3 662390 662479 -226862099 + LTR33 LTR ERVL 27 116 -405 547 281 119 0 chr3 662535 662770 -226861808 + LTR33 LTR ERVL 222 484 -37 358 275 70 0 chr3 662891 663033 -226861545 - Charlie8 DNA MER1_type -2217 200 49 194 266 13 76 chr3 663307 663386 -226861192 + MIR SINE MIR 77 150 -112 442 257 88 70 chr3 663636 663807 -226860771 - MER5B DNA MER1_type -3 175 2 441 297 24 53 chr3 664035 664244 -226860334 - MIR SINE MIR -48 214 12 270 116 0 0 chr3 664734 664777 -226859801 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 49 0 0 chr3 666637 666678 -226857900 + AT_rich Low_complexity Low_complexity 1 41 0 426 273 52 32 chr3 667648 667802 -226856776 - MIR SINE MIR -57 205 49 307 284 23 11 chr3 670960 671048 -226853530 - L2 LINE L2 -2 3311 3223 363 121 0 0 chr3 671325 671383 -226853195 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 29 0 0 0 chr3 672237 672266 -226852312 + AT_rich Low_complexity Low_complexity 1 29 0 261 330 113 19 chr3 672916 673022 -226851556 - MIR3 SINE MIR -27 181 66 21 0 0 0 chr3 673098 673119 -226851459 + AT_rich Low_complexity Low_complexity 1 21 0 1617 127 19 16 chr3 673364 673671 -226850907 - AluY SINE Alu -3 308 1 319 347 8 0 chr3 673688 673809 -226850769 + MLT1J LTR MaLR 77 198 -313 378 337 126 0 chr3 674246 674501 -226850077 + MLT1K LTR MaLR 151 437 -151 325 264 18 27 chr3 674730 674840 -226849738 + MER117 DNA MER1_type 6 114 -83 3744 143 17 6 chr3 675681 676316 -226848262 + L1PA16 LINE L1 5516 6157 -9 249 190 0 38 chr3 676840 676919 -226847659 + MER116 DNA Mariner 5 80 0 1920 160 0 0 chr3 677066 677374 -226847204 + AluSx SINE Alu 1 308 0 1664 267 67 45 chr3 677374 677721 -226846857 + L1ME LINE L1 66 404 -5676 1822 207 14 8 chr3 677721 678084 -226846494 + MLT1A1 LTR MaLR 1 365 0 1664 267 67 45 chr3 678084 678954 -226845624 + L1ME LINE L1 404 1309 -4771 2422 51 0 0 chr3 679017 679310 -226845268 - AluY SINE Alu -17 294 2 676 275 26 17 chr3 679310 679590 -226844988 + L1ME LINE L1 1413 1697 -4383 21 36 0 0 chr3 680675 680703 -226843875 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 10 7 chr3 683355 683660 -226840918 + AluY SINE Alu 1 306 -5 522 338 39 13 chr3 683966 684197 -226840381 - MIR SINE MIR -1 261 25 189 200 89 0 chr3 684296 684341 -226840237 + L2 LINE L2 3265 3313 0 236 320 119 21 chr3 684745 684939 -226839639 - L2 LINE L2 -1136 2178 1966 300 300 40 72 chr3 685062 685312 -226839266 - MIR SINE MIR 0 262 21 210 37 0 0 chr3 685678 685705 -226838873 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 1982 82 0 70 chr3 685778 685821 -226838757 - L1PA10 LINE L1 -11 6157 6113 180 0 0 0 chr3 685821 685841 -226838737 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1725 141 21 35 chr3 685841 686124 -226838454 - AluSg SINE Alu -31 279 1 1982 82 0 70 chr3 686124 686395 -226838183 - L1PA10 LINE L1 -53 6115 5864 916 243 13 26 chr3 686509 686735 -226837843 + MER58A DNA MER1_type 2 224 0 642 253 75 11 chr3 686941 687127 -226837451 + MLT1J2 LTR MaLR 39 236 -214 2149 155 13 28 chr3 687522 687916 -226836662 - MLT1B LTR MaLR -2 388 1 1752 182 18 3 chr3 688296 688636 -226835942 + MER7A DNA MER2_type 4 346 0 482 288 43 6 chr3 688872 689035 -226835543 - MIR SINE MIR -15 247 79 333 269 26 0 chr3 689368 689446 -226835132 - MER2 DNA MER2_type 0 345 266 2424 76 0 0 chr3 689461 689762 -226834816 - AluSc SINE Alu -8 301 1 1065 180 11 21 chr3 689762 689951 -226834627 - MER2 DNA MER2_type -158 187 1 470 234 11 4 chr3 692686 692963 -226831615 + (TA)n Simple_repeat Simple_repeat 1 279 0 2096 110 7 0 chr3 693959 694320 -226830258 + AluSq SINE Alu 1 363 0 1418 99 0 0 chr3 694320 694512 -226830066 + AluY SINE Alu 106 297 -14 283 271 59 42 chr3 694665 694783 -226829795 - MLT1K LTR MaLR -13 575 456 39 0 0 0 chr3 694828 694867 -226829711 + AT_rich Low_complexity Low_complexity 1 39 0 285 260 90 0 chr3 695032 695132 -226829446 - MIR SINE MIR -26 236 128 390 347 17 6 chr3 695720 695896 -226828682 - MIR SINE MIR -83 179 2 2171 162 7 55 chr3 696748 696911 -226827667 + Tigger2a DNA MER2_type 1 170 -2538 1886 147 0 42 chr3 696911 697224 -226827354 + AluSx SINE Alu 1 300 -12 2171 162 7 55 chr3 697224 697516 -226827062 + Tigger2a DNA MER2_type 170 434 0 257 262 0 0 chr3 698098 698193 -226826385 + (TG)n Simple_repeat Simple_repeat 1 95 0 1928 160 0 16 chr3 698309 698616 -226825962 + AluSx SINE Alu 1 302 -10 366 74 0 0 chr3 700228 700282 -226824296 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 259 352 11 11 chr3 700287 700375 -226824203 - L2 LINE L2 -36 3277 3190 435 363 97 0 chr3 700628 700906 -226823672 - L2 LINE L2 -352 2962 2658 1005 280 53 51 chr3 701091 701866 -226822712 + L2 LINE L2 2542 3313 0 232 353 105 15 chr3 702023 702156 -226822422 - L2 LINE L2 0 3272 3128 1704 173 4 4 chr3 702492 702769 -226821809 + AluJo SINE Alu 2 278 -34 239 111 0 22 chr3 702773 702818 -226821760 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 280 271 51 25 chr3 702949 703067 -226821511 + Charlie8 DNA MER1_type 368 488 -1929 1621 274 48 25 chr3 704043 704597 -226819981 + MLT1F1 LTR MaLR 1 567 0 212 317 20 20 chr3 704634 704735 -226819843 + MER5B DNA MER1_type 78 178 0 374 353 68 10 chr3 705375 705582 -226818996 + MIR SINE MIR 25 243 -19 234 329 40 79 chr3 706291 706519 -226818059 - L2 LINE L2 -48 3224 3006 339 255 98 0 chr3 707196 707298 -226817280 - MIR SINE MIR -136 126 15 568 187 90 15 chr3 708100 708234 -226816344 + L1MB2 LINE L1 6025 6168 -3 1496 207 18 3 chr3 708591 708876 -226815702 - AluJb SINE Alu -22 290 2 1723 155 14 47 chr3 709121 709417 -226815161 + AluJb SINE Alu 1 286 -26 201 94 0 0 chr3 709436 709468 -226815110 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 686 307 77 25 chr3 710055 710420 -226814158 - LTR33 LTR ERVL -10 511 128 722 164 0 210 chr3 710425 710580 -226813998 - MER5A DNA MER1_type 0 189 100 897 143 0 8 chr3 710580 710713 -226813865 - FLAM_C SINE Alu 0 133 2 722 164 0 210 chr3 710713 710795 -226813783 - MER5A DNA MER1_type -89 100 2 259 273 16 62 chr3 710804 710932 -226813646 - LTR33 LTR ERVL -399 122 1 737 261 6 6 chr3 711432 711612 -226812966 + MER5A DNA MER1_type 10 189 0 330 247 31 31 chr3 711619 711716 -226812862 - MER5B DNA MER1_type 0 178 82 393 222 11 11 chr3 711765 711855 -226812723 + MLT1H LTR MaLR 73 162 -387 216 381 41 41 chr3 712012 712159 -226812419 + L2 LINE L2 3117 3263 -9 1198 130 0 0 chr3 713937 714114 -226810464 - AluSg/x SINE Alu -3 309 133 264 224 35 0 chr3 714274 714332 -226810246 + AluJ/FLAM SINE Alu 1 60 -242 377 278 17 9 chr3 715851 715966 -226808612 + L2 LINE L2 3190 3305 -8 479 351 52 12 chr3 716399 716647 -226807931 - MIR SINE MIR 0 262 5 201 242 15 30 chr3 717154 717220 -226807358 + GA-rich Low_complexity Low_complexity 4 68 0 831 186 6 27 chr3 718753 718936 -226805642 + MER96B DNA MER1_type? 1 179 -238 876 216 52 28 chr3 721019 721232 -226803346 + MER20 DNA MER1_type 2 219 0 232 353 39 0 chr3 721289 721391 -226803187 + L2 LINE L2 3167 3272 0 404 261 164 48 chr3 721792 721899 -226802679 - MER113 DNA MER1_type? -116 405 312 2202 117 7 0 chr3 721899 722208 -226802370 - AluSx SINE Alu -1 311 1 404 261 164 48 chr3 722208 722430 -226802148 - MER113 DNA MER1_type? -209 312 38 946 329 36 17 chr3 722999 723410 -226801168 - L3 LINE CR1 -213 1364 946 1615 178 52 0 chr3 723491 723778 -226800800 - AluJb SINE Alu -10 302 1 401 188 0 10 chr3 723800 723896 -226800682 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 724097 724288 -226800290 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 724339 724472 -226800106 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 724540 724841 -226799737 + AluSx SINE Alu 1 302 0 23 78 0 0 chr3 727792 727843 -226796735 + AT_rich Low_complexity Low_complexity 1 51 0 362 326 23 0 chr3 727972 728101 -226796477 + MER103 DNA DNA 24 155 -11 272 400 22 22 chr3 729923 730058 -226794520 - L2 LINE L2 -4 3268 3134 195 322 164 0 chr3 730298 730450 -226794128 - L2 LINE L2 -400 2914 2738 26474 129 9 5 chr3 731125 736383 -226788195 - L1PA7 LINE L1 -1 6468 1189 988 155 23 5 chr3 736490 736681 -226787897 + AluSq SINE Alu 66 218 -95 1821 142 7 23 chr3 736965 737267 -226787311 - AluSx SINE Alu -15 297 1 1879 171 97 8 chr3 737515 737906 -226786672 + MSTB LTR MaLR 1 426 0 272 89 0 22 chr3 739016 739061 -226785517 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr3 739425 739447 -226785131 + AT_rich Low_complexity Low_complexity 1 22 0 1256 140 0 0 chr3 739523 739702 -226784876 - AluSg/x SINE Alu -2 310 132 270 294 76 11 chr3 739802 739894 -226784684 - L2 LINE L2 0 3272 3175 1799 252 21 14 chr3 740061 740493 -226784085 - MER82 DNA MER2_type -7 646 212 428 82 0 0 chr3 740494 740555 -226784023 + Alu SINE Alu 243 303 -9 900 215 19 10 chr3 740790 740999 -226783579 - MER82 DNA MER2_type -433 220 10 260 77 0 0 chr3 741059 741098 -226783480 + MADE1 DNA Mariner 42 80 0 2252 106 0 7 chr3 742419 742722 -226781856 + AluSx SINE Alu 1 301 -11 374 308 43 0 chr3 743130 743247 -226781331 - L2 LINE L2 -7 3265 3144 35 54 0 0 chr3 743247 743303 -226781275 + AT_rich Low_complexity Low_complexity 1 56 0 3630 99 25 2 chr3 743335 743851 -226780727 + MER41B LTR ERV1 1 528 -107 2011 154 0 0 chr3 743858 744156 -226780422 - AluSx SINE Alu -12 300 3 277 337 70 30 chr3 744421 744851 -226779727 + L1ME LINE L1 5370 5816 -346 243 0 0 0 chr3 745748 745775 -226778803 + (T)n Simple_repeat Simple_repeat 1 27 0 264 306 72 0 chr3 746249 746360 -226778218 - L2 LINE L2 -6 3307 3189 736 225 7 7 chr3 746575 746751 -226777827 - AluJb SINE Alu 0 310 135 1717 190 40 54 chr3 746753 746833 -226777745 - L1MB7 LINE L1 -10 6174 6094 718 217 0 0 chr3 746833 746962 -226777616 - FLAM_A SINE Alu -1 132 4 1717 190 40 54 chr3 746962 747360 -226777218 - L1MB7 LINE L1 -90 6094 5703 403 327 92 9 chr3 748549 748766 -226775812 - MIR SINE MIR -3 259 25 215 305 180 8 chr3 749220 749348 -226775230 + L2 LINE L2 3160 3309 -4 990 196 0 0 chr3 751148 751321 -226773257 - AluJb SINE Alu -5 307 135 243 264 36 82 chr3 752001 752111 -226772467 + MLT1K LTR MaLR 462 566 -22 194 152 0 22 chr3 753306 753352 -226771226 + GA-rich Low_complexity Low_complexity 2 46 0 336 154 0 0 chr3 753466 753518 -226771060 + L2 LINE L2 3261 3312 -1 1794 175 0 3 chr3 754071 754362 -226770216 - AluJb SINE Alu -22 290 1 22 35 0 0 chr3 755891 755920 -226768658 + AT_rich Low_complexity Low_complexity 1 29 0 234 150 0 0 chr3 755956 755996 -226768582 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1563 241 43 108 chr3 756029 756587 -226767991 - MLT1F1 LTR MaLR 0 567 24 805 115 0 0 chr3 756603 756749 -226767829 + AluSg/x SINE Alu 177 322 0 237 180 20 0 chr3 757154 757204 -226767374 - MLT1I LTR MaLR -1 408 358 611 306 97 12 chr3 757257 757505 -226767073 - MLT1I LTR MaLR -140 269 1 2016 186 3 3 chr3 757971 758336 -226766242 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 759380 759402 -226765176 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 37 37 chr3 761545 761654 -226762924 + MIR SINE MIR 59 167 -95 41 98 0 0 chr3 762676 762808 -226761770 + AT_rich Low_complexity Low_complexity 1 132 0 602 177 39 31 chr3 762998 763128 -226761450 + FLAM_C SINE Alu 1 131 -2 255 285 228 13 chr3 763132 763290 -226761288 - MIR SINE MIR -43 219 28 215 204 0 0 chr3 763570 763614 -226760964 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 320 33 40 chr3 763875 764025 -226760553 + L2 LINE L2 3164 3312 -1 1737 174 7 0 chr3 764079 764367 -226760211 - AluSx SINE Alu -22 290 1 823 132 0 76 chr3 764370 764514 -226760064 - AluSq/x SINE Alu -179 133 1 214 132 38 0 chr3 764556 764609 -226759969 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr3 764609 764633 -226759945 + AT_rich Low_complexity Low_complexity 1 24 0 2058 105 10 27 chr3 764633 764928 -226759650 - AluSx SINE Alu -22 290 1 234 206 0 0 chr3 766136 766199 -226758379 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 766660 766685 -226757893 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 768740 768848 -226755730 + MIR SINE MIR 34 139 -123 22 0 0 0 chr3 769415 769437 -226755141 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 769749 770058 -226754520 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 771755 772061 -226752517 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 772358 772426 -226752152 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 772964 773024 -226751554 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 773168 773194 -226751384 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 773198 773337 -226751241 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 773482 773664 -226750914 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 774378 774455 -226750123 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 774457 774517 -226750061 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 775051 775216 -226749362 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 775265 775629 -226748949 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 775753 775982 -226748596 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 776824 777142 -226747436 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 777395 777616 -226746962 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 777767 777802 -226746776 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 777802 779187 -226745391 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 780357 780388 -226744190 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 780496 780812 -226743766 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 780849 780880 -226743698 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 783484 783634 -226740944 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 786640 786809 -226737769 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 788056 788156 -226736422 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 788156 788426 -226736152 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 788426 788909 -226735669 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 789084 789327 -226735251 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 789494 789634 -226734944 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 789681 789810 -226734768 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 790543 790583 -226733995 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 791168 791323 -226733255 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 791793 791990 -226732588 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 792086 792212 -226732366 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 792222 792434 -226732144 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 792689 792755 -226731823 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 792756 793128 -226731450 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 794644 794857 -226729721 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 794914 795016 -226729562 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 795309 795524 -226729054 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 795524 795833 -226728745 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 795833 796055 -226728523 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 796624 797035 -226727543 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 797116 797402 -226727176 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 797424 797520 -226727058 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 797721 797912 -226726666 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 797963 798096 -226726482 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 798164 798465 -226726113 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 799487 799561 -226725017 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 799646 799830 -226724748 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 800629 800929 -226723649 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 803108 803155 -226721423 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 803194 803408 -226721170 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 806298 806579 -226717999 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 806579 806626 -226717952 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 807588 807872 -226716706 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 808636 809139 -226715439 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 809241 809332 -226715246 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 809347 809492 -226715086 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 810844 811206 -226713372 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 811866 812149 -226712429 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 813131 813279 -226711299 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 813887 813908 -226710670 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 813945 814005 -226710573 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 814117 814171 -226710407 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 814220 814265 -226710313 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 814654 814963 -226709615 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 814963 815189 -226709389 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 817319 817340 -226707238 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 818925 818990 -226705588 + (CA)n Simple_repeat Simple_repeat 2 68 0 771 270 47 9 chr3 819040 819251 -226705327 + MER20 DNA MER1_type 1 219 0 931 282 78 54 chr3 819531 819606 -226704972 - L1MEc LINE L1 -3921 2475 2403 2318 113 0 0 chr3 819606 819906 -226704672 - AluSx SINE Alu -12 300 1 931 282 78 54 chr3 819906 820735 -226703843 - L1MEc LINE L1 -3993 2403 1549 527 221 29 0 chr3 820735 820839 -226703739 - U6 snRNA snRNA 0 107 1 201 147 0 0 chr3 821548 821582 -226702996 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 525 229 52 81 chr3 821696 821906 -226702672 - MER20 DNA MER1_type -15 204 1 510 287 145 18 chr3 822059 822341 -226702237 - L2 LINE L2 0 3313 2996 505 278 126 36 chr3 823562 823785 -226700793 + MIR SINE MIR 7 249 -13 4283 105 21 10 chr3 824258 824375 -226700203 - MER41B LTR ERV1 0 635 521 2374 102 0 6 chr3 824375 824688 -226699890 + AluSx SINE Alu 1 311 -1 4283 105 21 10 chr3 824688 825198 -226699380 - MER41B LTR ERV1 -114 521 1 35 54 0 0 chr3 825230 825286 -226699292 + AT_rich Low_complexity Low_complexity 1 56 0 374 308 43 0 chr3 825286 825403 -226699175 + L2 LINE L2 3144 3265 -7 2252 106 0 7 chr3 825811 826114 -226698464 - AluSx SINE Alu -11 301 1 260 77 0 0 chr3 827435 827474 -226697104 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 827534 827743 -226696835 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 827978 828039 -226696539 - Alu SINE Alu -9 302 242 1805 254 21 14 chr3 828040 828477 -226696101 + MER82 DNA MER2_type 212 651 -2 270 294 76 11 chr3 828639 828731 -226695847 + L2 LINE L2 3175 3272 0 1256 140 0 0 chr3 828831 829010 -226695568 + AluSg/x SINE Alu 130 308 -2 22 0 0 0 chr3 829086 829108 -226695470 + AT_rich Low_complexity Low_complexity 1 22 0 272 89 0 22 chr3 829472 829517 -226695061 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1879 171 97 8 chr3 830627 831018 -226693560 - MSTB LTR MaLR 0 426 1 1821 142 7 23 chr3 831266 831568 -226693010 + AluSx SINE Alu 1 297 -15 229 54 0 0 chr3 831852 831889 -226692689 - AluSq SINE Alu -4 295 259 1074 154 6 6 chr3 831890 832059 -226692519 - AluSq SINE Alu -95 218 50 1803 168 0 3 chr3 832083 832374 -226692204 + AluJb SINE Alu 1 290 -22 336 154 0 0 chr3 832927 832979 -226691599 - L2 LINE L2 -1 3312 3261 194 152 0 22 chr3 833093 833139 -226691439 + CT-rich Low_complexity Low_complexity 2 46 0 243 264 36 82 chr3 834334 834444 -226690134 - MLT1K LTR MaLR -22 566 462 990 196 0 0 chr3 835124 835297 -226689281 + AluJb SINE Alu 135 307 -5 220 295 209 8 chr3 837097 837226 -226687352 - L2 LINE L2 -4 3309 3155 271 400 22 22 chr3 838602 838737 -226685841 - L2 LINE L2 -4 3268 3134 192 322 164 0 chr3 838977 839129 -226685449 - L2 LINE L2 -400 2914 2738 16224 94 11 7 chr3 839798 842961 -226681617 - L1PA7 LINE L1 -1 6153 2978 220 189 44 22 chr3 843685 843775 -226680803 + (TA)n Simple_repeat Simple_repeat 2 93 0 24 67 0 0 chr3 843889 843934 -226680644 + AT_rich Low_complexity Low_complexity 1 45 0 283 210 65 0 chr3 846570 846708 -226677870 + (TA)n Simple_repeat Simple_repeat 2 148 0 1235 216 61 22 chr3 847414 847861 -226676717 - AluJo SINE Alu 0 458 1 871 206 79 14 chr3 848209 848423 -226676155 + AluJo SINE Alu 1 228 -84 3789 175 36 1 chr3 848623 849362 -226675216 - L1MC1 LINE L1 -9 6324 5560 482 261 36 12 chr3 849482 849647 -226674931 - MER20B DNA MER1_type -604 179 11 397 199 0 3 chr3 849772 849871 -226674707 + L1ME3 LINE L1 6066 6163 -1 213 39 0 0 chr3 852344 852370 -226672208 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 453 36 0 0 chr3 852369 852424 -226672154 + (TA)n Simple_repeat Simple_repeat 2 56 0 877 261 123 64 chr3 852480 852993 -226671585 - MLT1H LTR MaLR -6 543 1 192 277 213 19 chr3 853243 853398 -226671180 - MIR SINE MIR -65 197 13 3191 130 74 42 chr3 853809 854402 -226670176 - LTR9 LTR ERV1 0 612 1 386 103 176 0 chr3 854427 854495 -226670083 + MADE1 DNA Mariner 1 80 0 976 110 65 0 chr3 854688 854843 -226669735 + L1MA3 LINE L1 6141 6305 0 1215 148 10 5 chr3 857004 857206 -226667372 + L1PA16 LINE L1 5784 5986 -180 1146 171 9 14 chr3 857231 857447 -226667131 + L1PA16 LINE L1 5951 6165 -1 186 43 0 0 chr3 857645 857668 -226666910 + (A)n Simple_repeat Simple_repeat 1 23 0 930 231 0 0 chr3 858595 858768 -226665810 + FAM SINE Alu 1 173 -2 253 347 13 13 chr3 859065 859215 -226665363 + MER113 DNA MER1_type? 336 485 -36 193 347 137 0 chr3 859233 859328 -226665250 - L3 LINE CR1 -23 1554 1447 22 56 0 0 chr3 860351 860387 -226664191 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 7 7 chr3 860433 860578 -226664000 + Charlie1a DNA MER1_type 9 153 -1302 1262 160 106 13 chr3 860580 860684 -226663894 + AluJo SINE Alu 1 94 -218 356 55 18 0 chr3 860684 860739 -226663839 + (TA)n Simple_repeat Simple_repeat 1 56 0 1262 160 106 13 chr3 860739 860871 -226663707 + AluJo SINE Alu 94 259 -53 2659 222 113 35 chr3 860871 861787 -226662791 + Charlie1a DNA MER1_type 191 1178 -277 760 188 0 14 chr3 861788 861932 -226662646 + FRAM SINE Alu 20 161 -15 794 197 89 37 chr3 861935 862204 -226662374 + Charlie1a DNA MER1_type 1168 1450 -5 241 250 83 0 chr3 862207 862279 -226662299 - MIR3 SINE MIR -46 162 85 279 0 0 0 chr3 862657 862688 -226661890 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 447 218 0 0 chr3 862692 862779 -226661799 - AluJ SINE Alu -26 286 200 762 196 0 14 chr3 862786 862929 -226661649 - AluJ SINE Alu -171 141 1 30 0 0 0 chr3 863689 863719 -226660859 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 864614 864642 -226659936 + AT_rich Low_complexity Low_complexity 1 28 0 323 310 115 19 chr3 865418 865731 -226658847 + L1ME4a LINE L1 5514 5856 -265 36 0 0 0 chr3 865941 865977 -226658601 + AT_rich Low_complexity Low_complexity 1 36 0 219 320 80 40 chr3 866538 866663 -226657915 + MIR SINE MIR 59 188 -74 450 254 0 51 chr3 866877 866995 -226657583 - MLT1I LTR MaLR -213 196 85 278 258 0 0 chr3 867600 867666 -226656912 + GA-rich Low_complexity Low_complexity 3 68 0 297 331 7 0 chr3 867727 867872 -226656706 + L1ME LINE L1 2217 2362 -3784 442 290 59 5 chr3 867918 868139 -226656439 + L1ME LINE L1 2473 2705 -3441 718 230 33 53 chr3 868183 868544 -226656034 + L1ME LINE L1 2795 3148 -2998 350 290 82 51 chr3 868543 868957 -226655621 + L1ME LINE L1 4419 4845 -1301 * 186 103 0 0 chr3 868992 869021 -226655557 + (TC)n Simple_repeat Simple_repeat 2 30 0 232 315 22 0 chr3 869041 869133 -226655445 + L1ME LINE L1 4918 5011 -1135 1512 174 0 78 chr3 869214 869248 -226655330 - AluJo SINE Alu -2 310 275 279 0 0 0 chr3 869248 869279 -226655299 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1512 174 0 78 chr3 869279 869578 -226655000 - AluJo SINE Alu -37 275 3 309 337 70 30 chr3 869843 870273 -226654305 + L1ME LINE L1 5370 5816 -346 23 0 0 0 chr3 871161 871184 -226653394 + AT_rich Low_complexity Low_complexity 1 23 0 265 306 72 0 chr3 871658 871769 -226652809 - L2 LINE L2 -6 3307 3189 198 0 0 0 chr3 871984 872006 -226652572 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 929 184 0 0 chr3 872009 872161 -226652417 - AluJb SINE Alu -26 286 135 1780 190 40 52 chr3 872163 872242 -226652336 - L1MB7 LINE L1 -10 6174 6096 710 217 0 0 chr3 872242 872371 -226652207 - FLAM_A SINE Alu -1 132 4 1780 190 40 52 chr3 872371 872769 -226651809 - L1MB7 LINE L1 -88 6096 5703 443 324 97 8 chr3 873963 874201 -226650377 - MIR SINE MIR -3 259 1 2135 49 0 28 chr3 875219 875418 -226649160 - AluY SINE Alu -2 309 119 5149 52 12 12 chr3 875418 876085 -226648493 - L1PA5 LINE L1 -13 6141 5475 2135 49 0 28 chr3 876085 876169 -226648409 - AluY SINE Alu -192 119 34 30 27 0 0 chr3 876360 876397 -226648181 + AT_rich Low_complexity Low_complexity 1 37 0 23 78 0 0 chr3 881247 881298 -226643280 + AT_rich Low_complexity Low_complexity 1 51 0 361 333 23 0 chr3 881427 881556 -226643022 + MER103 DNA DNA 24 155 -11 27 0 0 0 chr3 882377 882404 -226642174 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr3 882505 882529 -226642049 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr3 882836 882871 -226641707 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 0 0 chr3 882902 883025 -226641553 + FRAM SINE Alu 22 144 -32 208 51 26 26 chr3 883025 883064 -226641514 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1868 146 0 0 chr3 883480 883821 -226640757 - AluY SINE Alu 0 341 1 208 305 84 11 chr3 886247 886342 -226638236 + MIR SINE MIR 63 164 -98 21 57 0 0 chr3 887358 887393 -226637185 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 41 16 chr3 887977 888100 -226636478 + MIR3 SINE MIR 75 200 -8 246 330 30 20 chr3 891057 891157 -226633421 + MIR3 SINE MIR 81 181 -27 27 29 0 0 chr3 892223 892257 -226632321 + AT_rich Low_complexity Low_complexity 1 34 0 252 59 0 0 chr3 892465 892499 -226632079 + (CA)n Simple_repeat Simple_repeat 2 35 0 29 47 0 0 chr3 893026 893069 -226631509 + AT_rich Low_complexity Low_complexity 1 43 0 226 328 0 0 chr3 893179 893246 -226631332 + Zaphod DNA AcHobo 1 67 -3964 509 286 128 17 chr3 893377 893667 -226630911 + MER115 DNA AcHobo 370 691 -2 230 352 28 0 chr3 893680 893788 -226630790 + MIR SINE MIR 40 150 -112 766 231 55 39 chr3 893850 894105 -226630473 + MIR SINE MIR 4 262 0 200 231 58 0 chr3 894381 894433 -226630145 - MIR SINE MIR -77 185 131 * 636 277 190 34 chr3 894431 895124 -226629454 - L2 LINE L2 0 3313 2498 212 351 72 9 chr3 895115 895226 -226629352 - MIR SINE MIR -68 140 23 * 321 309 123 25 chr3 895442 895604 -226628974 - MIR SINE MIR -54 208 31 1733 206 65 54 chr3 896085 896581 -226627997 - MLT1D LTR MaLR 0 505 5 286 331 32 16 chr3 896629 896753 -226627825 - L2 LINE L2 -6 3266 3141 379 115 57 8 chr3 896992 897114 -226627464 + (TA)n Simple_repeat Simple_repeat 1 128 0 225 359 58 6 chr3 897173 897329 -226627249 + MIR SINE MIR 99 262 0 1954 146 19 10 chr3 897332 897641 -226626937 - AluSx SINE Alu 0 312 1 4242 20 0 2 chr3 898629 899125 -226625453 - L1PA2 LINE L1 -1 6154 5660 3730 18 0 0 chr3 899125 899567 -226625011 + L1P LINE L1 4857 5298 -848 831 186 6 27 chr3 900442 900625 -226623953 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 902158 902224 -226622354 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 902731 902979 -226621599 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 903412 903527 -226621051 - L2 LINE L2 -8 3305 3190 2212 121 0 0 chr3 904227 904524 -226620054 + AluSx SINE Alu 1 297 -15 527 298 13 77 chr3 905391 905626 -226618952 + MIR SINE MIR 15 234 -28 1275 142 0 10 chr3 905703 905907 -226618671 - L1PA8A LINE L1 -3 6443 6242 26104 138 9 17 chr3 905909 912092 -226612486 - L1PA8A LINE L1 -250 6196 2 475 299 137 10 chr3 913704 913901 -226610677 - MIR SINE MIR -10 252 31 328 327 9 0 chr3 914178 914288 -226610290 + MLT1I LTR MaLR 281 391 -18 277 348 106 12 chr3 914341 914502 -226610076 - MER5A DNA MER1_type -13 176 1 263 382 21 21 chr3 915382 915526 -226609052 - MER5A DNA MER1_type -44 145 2 303 306 104 22 chr3 916583 916717 -226607861 + LTR33 LTR ERVL 3 147 -374 22 0 0 0 chr3 917795 917817 -226606761 + AT_rich Low_complexity Low_complexity 1 22 0 353 345 76 29 chr3 919041 919212 -226605366 - MER5A DNA MER1_type -3 186 8 4494 155 20 27 chr3 919350 920135 -226604443 - LTR39 LTR ERV1 -2 781 2 26 0 0 0 chr3 921518 921544 -226603034 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 922184 922206 -226602372 + AT_rich Low_complexity Low_complexity 1 22 0 183 376 56 16 chr3 922361 922486 -226602092 - MIR SINE MIR -76 186 57 2226 124 0 0 chr3 923586 923884 -226600694 + AluSg SINE Alu 1 298 -12 1126 146 34 0 chr3 924859 925065 -226599513 + L1MA8 LINE L1 6067 6279 -12 25 0 0 0 chr3 925570 925595 -226598983 + AT_rich Low_complexity Low_complexity 1 25 0 2348 92 3 6 chr3 926304 926618 -226597960 + AluSp SINE Alu 1 313 0 180 244 133 33 chr3 927255 927345 -226597233 + L3 LINE CR1 1051 1149 -428 199 300 38 12 chr3 927575 927655 -226596923 - L2 LINE L2 -5 3308 3227 437 214 161 0 chr3 928283 928395 -226596183 + MIR SINE MIR 133 262 0 2038 132 10 16 chr3 929271 929574 -226595004 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 929634 929656 -226594922 + AT_rich Low_complexity Low_complexity 1 22 0 868 270 23 0 chr3 929967 930182 -226594396 + MER58A DNA MER1_type 1 220 -4 271 353 131 18 chr3 930871 931029 -226593549 - MIR SINE MIR -10 252 61 2140 55 0 0 chr3 931029 931286 -226593292 + AluY SINE Alu 40 296 -15 271 353 131 18 chr3 931286 931348 -226593230 - MIR SINE MIR -201 61 7 32 0 0 0 chr3 931593 931625 -226592953 + AT_rich Low_complexity Low_complexity 1 32 0 309 322 29 41 chr3 931735 931906 -226592672 - L1 LINE L1 -1854 4292 4124 260 214 95 24 chr3 931969 932053 -226592525 + MIR SINE MIR 30 119 -89 195 387 13 0 chr3 932136 932211 -226592367 + L2 LINE L2 3182 3257 -15 376 267 112 64 chr3 932425 932612 -226591966 + MIR SINE MIR 2 197 -65 454 108 12 48 chr3 933730 933813 -226590765 - MADE1 DNA Mariner 0 80 1 24 0 0 0 chr3 935375 935399 -226589179 + AT_rich Low_complexity Low_complexity 1 24 0 2314 89 7 3 chr3 937399 937701 -226586877 + AluSq SINE Alu 2 304 -9 1155 126 11 0 chr3 938688 938862 -226585716 + AluSg/x SINE Alu 131 306 -6 1749 199 0 0 chr3 938939 939240 -226585338 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 940769 940798 -226583780 + AT_rich Low_complexity Low_complexity 1 29 0 255 125 0 0 chr3 940834 940874 -226583704 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1576 239 43 108 chr3 940907 941465 -226583113 - MLT1F1 LTR MaLR 0 567 24 822 113 0 0 chr3 941481 941587 -226582991 + AluSg/x SINE Alu 177 282 -28 195 114 0 0 chr3 941592 941627 -226582951 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 237 180 20 0 chr3 942032 942082 -226582496 - MLT1I LTR MaLR -1 408 358 600 311 97 12 chr3 942135 942383 -226582195 - MLT1I LTR MaLR -140 269 1 2004 189 3 3 chr3 942849 943214 -226581364 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 944258 944280 -226580298 + AT_rich Low_complexity Low_complexity 1 22 0 252 312 37 37 chr3 946424 946533 -226578045 + MIR SINE MIR 59 167 -95 54 84 0 0 chr3 947555 947686 -226576892 + AT_rich Low_complexity Low_complexity 1 131 0 615 177 39 23 chr3 947876 948006 -226576572 + FLAM_C SINE Alu 1 132 -1 251 316 221 6 chr3 948010 948168 -226576410 - MIR SINE MIR -43 219 28 792 354 116 27 chr3 949148 949854 -226574724 + L2 LINE L2 2112 2880 -434 279 282 68 61 chr3 950212 950375 -226574203 + LTR16C LTR ERVL 326 489 -2 355 383 19 13 chr3 950597 950751 -226573827 + L2 LINE L2 3118 3272 0 1050 293 137 19 chr3 950820 951666 -226572912 + L2 LINE L2 2355 3312 -1 21 57 0 0 chr3 952064 952099 -226572479 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 952176 952198 -226572380 + AT_rich Low_complexity Low_complexity 1 22 0 236 275 0 14 chr3 952786 952855 -226571723 + MIR SINE MIR 174 241 -21 574 274 104 0 chr3 953123 953287 -226571291 - MER5A DNA MER1_type -8 181 1 324 0 0 0 chr3 954845 954881 -226569697 + (CA)n Simple_repeat Simple_repeat 1 36 0 3262 159 17 22 chr3 955842 956426 -226568152 + L1PA16 LINE L1 5493 6073 -93 614 254 122 0 chr3 956822 957019 -226567559 + MER58A DNA MER1_type 2 222 -2 657 290 106 5 chr3 958251 958468 -226566110 + MIR SINE MIR 8 246 -16 306 258 68 79 chr3 958621 958811 -226565767 + MLT1L LTR MaLR 207 394 -221 23 54 0 0 chr3 959137 959174 -226565404 + AT_rich Low_complexity Low_complexity 1 37 0 1645 154 10 61 chr3 959401 959713 -226564865 + AluSq SINE Alu 1 296 -17 680 165 31 16 chr3 960151 960278 -226564300 + FLAM_C SINE Alu 1 129 -4 561 287 59 31 chr3 960887 961201 -226563377 + MLT1I LTR MaLR 56 405 -4 356 350 85 0 chr3 961228 961428 -226563150 + L2 LINE L2 1753 1969 -1345 566 310 78 52 chr3 961428 961815 -226562763 + L2 LINE L2 2576 2972 -342 1471 267 95 40 chr3 961863 962358 -226562220 + MLT1E LTR MaLR 35 556 -37 190 346 51 0 chr3 962419 962497 -226562081 + L2 LINE L2 2992 3073 -240 225 263 126 53 chr3 962555 962650 -226561928 + MLT1J LTR MaLR 1 102 -409 266 315 117 9 chr3 962650 962761 -226561817 + MIR SINE MIR 140 262 0 189 200 140 0 chr3 962941 962991 -226561587 - L2 LINE L2 -8 3264 3208 468 290 58 0 chr3 963473 963611 -226560967 - MIR SINE MIR -17 245 100 717 223 38 0 chr3 964711 964868 -226559710 + MER3 DNA MER1_type 37 199 -10 241 304 88 35 chr3 967474 967645 -226556933 - MLT1L LTR MaLR -229 386 207 449 302 23 0 chr3 967675 967804 -226556774 - MLT1L LTR MaLR -353 262 131 377 270 0 11 chr3 967911 968000 -226556578 - MER2 DNA MER2_type -250 95 8 893 313 79 25 chr3 969070 969502 -226555076 + LTR16B LTR ERVL 8 462 -2 21 0 0 0 chr3 969545 969566 -226555012 + AT_rich Low_complexity Low_complexity 1 21 0 551 321 71 35 chr3 969581 970032 -226554546 - L1MC4a LINE L1 -1969 5839 5373 193 246 98 0 chr3 971330 971391 -226553187 - MIR SINE MIR -27 235 169 856 262 81 89 chr3 971413 971806 -226552772 + LTR16B LTR ERVL 1 390 -74 421 101 0 38 chr3 971812 971891 -226552687 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 314 285 16 41 chr3 971921 971958 -226552620 + LTR16B LTR ERVL 345 381 -83 1772 148 0 0 chr3 971958 972222 -226552356 - AluSx SINE Alu -44 268 5 314 285 16 41 chr3 972222 972307 -226552271 + LTR16B LTR ERVL 381 464 0 724 303 133 39 chr3 972647 973129 -226551449 + MLT1H LTR MaLR 18 544 -5 823 306 144 13 chr3 973157 973690 -226550888 + MLT1L LTR MaLR 1 603 -12 21 0 0 0 chr3 973968 973989 -226550589 + AT_rich Low_complexity Low_complexity 1 21 0 377 216 216 8 chr3 975562 975696 -226548882 + MLT1H LTR MaLR 1 162 -387 321 293 79 43 chr3 975868 976121 -226548457 + MLT1H LTR MaLR 294 555 0 4862 120 3 0 chr3 976959 977676 -226546902 + L1PA11 LINE L1 5455 6173 -1 323 67 0 0 chr3 977983 978028 -226546550 - MLT2A1 LTR ERVL -10 434 390 378 267 0 0 chr3 978029 978119 -226546459 - L1MC4 LINE L1 -1339 6703 6614 279 173 0 0 chr3 978121 978173 -226546405 + (CA)n Simple_repeat Simple_repeat 2 53 0 862 65 0 0 chr3 978174 978281 -226546297 - HERVL LTR ERVL -1239 4415 4309 319 86 69 26 chr3 978281 978397 -226546181 + (TA)n Simple_repeat Simple_repeat 1 121 0 2797 86 35 15 chr3 978397 978794 -226545784 - MLT2A1 LTR ERVL -39 405 1 33023 73 6 12 chr3 978794 984474 -226540104 - HERVL-A1-A1 LTR ERVL 0 5654 1 3240 71 40 0 chr3 984477 984902 -226539676 - MLT2A1 LTR ERVL -2 442 1 180 111 0 0 chr3 985003 985030 -226539548 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1375 168 50 42 chr3 985562 985824 -226538754 + AluJb SINE Alu 1 264 -48 603 86 19 9 chr3 987130 987235 -226537343 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 67 0 0 chr3 987264 987309 -226537269 + AT_rich Low_complexity Low_complexity 1 45 0 809 243 0 0 chr3 987309 987461 -226537117 + AluJb SINE Alu 129 280 -32 1969 149 39 3 chr3 987517 987852 -226536726 - MER7A DNA MER2_type 0 346 2 486 266 65 26 chr3 988505 988659 -226535919 - MIR SINE MIR 0 262 103 258 210 60 60 chr3 989708 989808 -226534770 + MIR SINE MIR 100 199 -63 230 295 162 0 chr3 990031 990136 -226534442 - MIR SINE MIR -101 161 40 387 152 27 18 chr3 990642 990754 -226533824 + MER96B DNA MER1_type? 66 178 -239 270 183 0 0 chr3 990886 990957 -226533621 + (TA)n Simple_repeat Simple_repeat 1 71 0 296 284 0 0 chr3 990965 991046 -226533532 + MER96B DNA MER1_type? 330 410 -7 562 306 38 16 chr3 991211 991397 -226533181 - MIR SINE MIR -69 193 4 1687 198 18 3 chr3 991850 992189 -226532389 - MER2 DNA MER2_type 0 344 1 2102 141 3 0 chr3 992189 992487 -226532091 - AluSx SINE Alu -13 299 1 218 281 83 0 chr3 993463 993559 -226531019 + MIR SINE MIR 110 213 -49 469 113 0 0 chr3 993685 993747 -226530831 + AluSg/x SINE Alu 217 278 -34 210 336 97 9 chr3 994125 994238 -226530340 + L2 LINE L2 3190 3312 -1 1612 162 0 35 chr3 995582 995866 -226528712 + AluJo SINE Alu 6 279 -33 22 0 0 0 chr3 998452 998474 -226526104 + AT_rich Low_complexity Low_complexity 1 22 0 592 271 52 29 chr3 998721 998931 -226525647 + LTR33 LTR ERVL 6 220 -301 1366 273 112 12 chr3 999023 999532 -226525046 - MLT1G1 LTR MaLR 0 595 36 274 270 11 11 chr3 999604 999693 -226524885 + LTR33 LTR ERVL 433 521 0 1058 240 78 18 chr3 1000768 1001152 -226523426 - LTR50 LTR ERVL -3 792 386 255 211 42 0 chr3 1001283 1001354 -226523224 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 332 326 0 36 chr3 1001558 1001696 -226522882 - MIR SINE MIR -12 250 118 266 217 42 192 chr3 1001808 1001928 -226522650 - MER91A DNA MER1_type -5 191 90 621 339 12 0 chr3 1001935 1002100 -226522478 - MER91A DNA MER1_type -28 168 2 1064 244 94 77 chr3 1002250 1002656 -226521922 - MLT1F LTR MaLR -3 539 123 2161 109 0 32 chr3 1002656 1002967 -226521611 - AluSg SINE Alu -9 301 1 1064 244 94 77 chr3 1002967 1003015 -226521563 - MLT1F LTR MaLR -419 123 77 21 0 0 0 chr3 1003208 1003229 -226521349 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 1003852 1003873 -226520705 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 0 0 chr3 1005388 1005432 -226519146 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 334 274 37 44 chr3 1005463 1005598 -226518980 + MER117 DNA MER1_type 64 197 0 2002 153 132 5 chr3 1005626 1006004 -226518574 - MSTA LTR MaLR -1 427 2 228 359 11 22 chr3 1006066 1006158 -226518420 + MER5B DNA MER1_type 88 178 0 22 0 0 0 chr3 1006184 1006206 -226518372 + AT_rich Low_complexity Low_complexity 1 22 0 749 129 0 0 chr3 1006209 1006325 -226518253 - L1MA2 LINE L1 -9 6295 6180 750 165 8 0 chr3 1006890 1007011 -226517567 - FLAM_C SINE Alu -11 122 1 357 93 0 0 chr3 1007029 1007083 -226517495 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 308 0 0 chr3 1007120 1007172 -226517406 + CT-rich Low_complexity Low_complexity 3 54 0 207 69 0 0 chr3 1007174 1007203 -226517375 + (CA)n Simple_repeat Simple_repeat 1 29 0 2158 169 54 7 chr3 1007938 1008346 -226516232 + MSTA LTR MaLR 1 427 -1 6375 186 132 9 chr3 1008351 1009754 -226514824 + MSTA-int LTR MaLR 5 1580 0 2137 152 53 22 chr3 1009754 1010129 -226514449 + MSTA LTR MaLR 1 392 -36 2003 131 0 29 chr3 1010129 1010443 -226514135 - AluSg SINE Alu -5 305 1 2137 152 53 22 chr3 1010443 1010482 -226514096 + MSTA LTR MaLR 392 428 0 1497 182 7 107 chr3 1010482 1010895 -226513683 - MLT1B LTR MaLR -16 374 3 2811 207 23 58 chr3 1011076 1011824 -226512754 - MER72 LTR ERV1 0 722 1 237 250 25 0 chr3 1011867 1011947 -226512631 - HsTC2 DNA Tc2 -2 1896 1815 329 335 30 6 chr3 1012094 1012261 -226512317 + L1MEd LINE L1 447 617 -5502 946 236 38 5 chr3 1012384 1012596 -226511982 + MER58A DNA MER1_type 6 224 0 573 278 25 6 chr3 1012601 1012763 -226511815 - MIR SINE MIR -56 206 42 243 87 87 22 chr3 1012818 1012864 -226511714 + L2 LINE L2 3265 3313 0 264 250 0 42 chr3 1012878 1012950 -226511628 - MIR SINE MIR -176 86 18 2331 64 0 32 chr3 1013412 1013725 -226510853 - AluY SINE Alu -8 303 1 351 206 14 14 chr3 1013933 1014006 -226510572 - MIR SINE MIR -188 74 2 282 369 27 0 chr3 1014455 1014604 -226509974 + L2 LINE L2 2053 2205 -1109 440 295 7 40 chr3 1014953 1015102 -226509476 - MER5B DNA MER1_type -34 144 1 592 199 46 8 chr3 1015528 1015659 -226508919 - MER20 DNA MER1_type -21 198 63 495 197 120 0 chr3 1015659 1015776 -226508802 + FLAM_A SINE Alu 11 141 -1 319 278 139 56 chr3 1015965 1016309 -226508269 + MLT1H LTR MaLR 108 491 -58 7267 121 9 10 chr3 1016309 1018211 -226506367 + L1PA8A LINE L1 4220 6129 -2 319 278 139 56 chr3 1018211 1018262 -226506316 + MLT1H LTR MaLR 491 536 -13 766 255 91 26 chr3 1018488 1018719 -226505859 - MIR SINE MIR -14 248 3 1174 203 28 46 chr3 1020124 1020450 -226504128 + MER33 DNA MER1_type 5 324 0 1028 178 26 4 chr3 1020652 1020916 -226503662 + AluSx SINE Alu 1 270 -42 286 161 69 0 chr3 1020918 1021005 -226503573 + AluSg/x SINE Alu 176 268 -32 286 161 69 0 chr3 1021007 1021094 -226503484 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021096 1021183 -226503395 + AluSg/x SINE Alu 176 268 -32 340 138 69 0 chr3 1021185 1021272 -226503306 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021274 1021361 -226503217 + AluSg/x SINE Alu 178 270 -32 329 138 69 0 chr3 1021363 1021450 -226503128 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021452 1021539 -226503039 + AluSg/x SINE Alu 176 268 -32 329 149 64 0 chr3 1021541 1021635 -226502943 + AluSg/x SINE Alu 176 275 -25 23 0 0 0 chr3 1021654 1021677 -226502901 + GC_rich Low_complexity Low_complexity 1 23 0 356 288 83 51 chr3 1021854 1022093 -226502485 - MIR SINE MIR -6 256 8 523 320 115 4 chr3 1022746 1022980 -226501598 - MIR SINE MIR -2 260 1 2158 91 0 10 chr3 1023752 1024061 -226500517 - L1PA13 LINE L1 -2 6161 5856 319 247 213 20 chr3 1024612 1024762 -226499816 - MER5A DNA MER1_type 0 189 11 1139 330 52 7 chr3 1024792 1025379 -226499199 + L2 LINE L2 2459 3070 -243 705 270 107 67 chr3 1025381 1025966 -226498612 - MLT1G1 LTR MaLR 0 595 1 384 247 190 17 chr3 1025987 1026161 -226498417 + L2 LINE L2 3106 3309 -4 186 297 0 16 chr3 1026226 1026290 -226498288 + MIR SINE MIR 187 249 -13 403 267 0 0 chr3 1026578 1026668 -226497910 + MIR SINE MIR 101 190 -72 2049 181 8 3 chr3 1026717 1027088 -226497490 + MER93b LTR ERV1 1 373 0 213 160 217 19 chr3 1027524 1027630 -226496948 + MIR SINE MIR 125 251 -11 1530 157 91 49 chr3 1028019 1028369 -226496209 - MLT1A1 LTR MaLR 0 365 1 450 125 0 0 chr3 1029168 1029265 -226495313 + AluS SINE Alu 220 316 0 993 185 29 0 chr3 1029759 1029964 -226494614 + MER2 DNA MER2_type 1 211 -134 407 284 107 57 chr3 1031020 1031405 -226493173 + MLT1J1 LTR MaLR 1 417 -29 302 273 27 55 chr3 1031454 1031564 -226493014 - MIR SINE MIR -31 231 125 720 233 57 5 chr3 1032722 1032915 -226491663 - MER3 DNA MER1_type -2 207 5 1094 204 33 49 chr3 1032927 1033199 -226491379 + MER33 DNA MER1_type 1 269 -2316 2001 148 0 0 chr3 1033199 1033497 -226491081 - AluSx SINE Alu -14 298 1 1094 204 33 49 chr3 1033497 1033553 -226491025 + MER33 DNA MER1_type 269 324 0 1173 275 88 10 chr3 1033589 1033975 -226490603 - LTR65 LTR ERV1 -29 640 225 232 280 56 19 chr3 1034443 1034550 -226490028 + L2 LINE L2 3201 3311 -2 682 262 27 22 chr3 1035569 1035752 -226488826 - MER5A DNA MER1_type -3 186 3 307 237 237 0 chr3 1036012 1036105 -226488473 - L2 LINE L2 0 3313 3199 819 268 107 53 chr3 1036120 1036643 -226487935 - MLT1H1 LTR MaLR -2 553 3 699 250 109 0 chr3 1036880 1037064 -226487514 - MIR SINE MIR -1 261 58 29 70 0 0 chr3 1039217 1039274 -226485304 + AT_rich Low_complexity Low_complexity 1 57 0 180 152 0 0 chr3 1039338 1039371 -226485207 + (TAA)n Simple_repeat Simple_repeat 3 35 0 305 289 11 0 chr3 1039493 1039583 -226484995 - L1MC4 LINE L1 -1339 6703 6613 402 243 0 18 chr3 1089854 1089973 -226434605 - MER69 DNA AcHobo -57 2469 8 202 322 52 26 chr3 1089982 1090097 -226434481 - MIR3 SINE MIR -54 154 37 554 189 71 53 chr3 1090122 1090403 -226434175 + pTR5 LTR ERV1 743 1028 -1410 1768 108 7 54 chr3 1090482 1090778 -226433800 + LTR12 LTR ERV1 1 282 -432 257 274 0 0 chr3 1090780 1090853 -226433725 + LTR30 LTR ERV1 552 624 -98 700 179 14 4 chr3 1090853 1091013 -226433565 + pTR5 LTR ERV1 49 316 -2122 535 136 0 5 chr3 1091013 1091113 -226433465 - L1M3 LINE L1 -352 5816 5720 621 139 32 9 chr3 1091126 1091232 -226433346 + LTR12 LTR ERV1 410 651 -63 6743 147 46 2 chr3 1091665 1092384 -226432194 + Tigger3b DNA MER2_type 1 794 -2234 2127 124 3 0 chr3 1092384 1092682 -226431896 - AluSx SINE Alu -13 299 1 6743 147 46 2 chr3 1092682 1093141 -226431437 + Tigger3b DNA MER2_type 794 1231 0 21 0 0 0 chr3 1093141 1093162 -226431416 + AT_rich Low_complexity Low_complexity 1 21 0 759 247 70 29 chr3 1093274 1093599 -226430979 - LTR33A LTR ERVL 0 523 149 265 343 102 0 chr3 1093662 1093799 -226430779 + MARNA DNA Mariner 70 220 -366 234 336 58 19 chr3 1094148 1094252 -226430326 - MIR SINE MIR -8 254 147 1553 186 16 19 chr3 1094257 1094568 -226430010 - AluJb SINE Alu -2 310 1 588 21 105 0 chr3 1094610 1094753 -226429825 + (TA)n Simple_repeat Simple_repeat 2 159 0 231 271 104 0 chr3 1094947 1095043 -226429535 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr3 1095178 1095202 -226429376 + AT_rich Low_complexity Low_complexity 1 24 0 242 273 0 0 chr3 1095659 1095714 -226428864 + L2 LINE L2 3257 3311 -2 2144 105 3 3 chr3 1096751 1097047 -226427531 + AluSc SINE Alu 1 296 -13 22579 43 5 4 chr3 1097382 1100825 -226423753 - L1PA5 LINE L1 -140 6014 2570 8688 91 11 12 chr3 1101441 1101777 -226422801 - L1P3 LINE L1 -337 5817 5482 2336 102 7 0 chr3 1101777 1102082 -226422496 - AluSg SINE Alu -3 307 1 8688 91 11 12 chr3 1102082 1103452 -226421126 - L1P3 LINE L1 -672 5482 4110 362 251 117 64 chr3 1105019 1105190 -226419388 + L3 LINE CR1 1077 1256 -321 279 0 0 0 chr3 1105406 1105437 -226419141 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 336 133 8 chr3 1105854 1105982 -226418596 + L2 LINE L2 3170 3313 0 239 203 29 14 chr3 1106000 1106069 -226418509 + GA-rich Low_complexity Low_complexity 3 72 0 313 318 16 8 chr3 1106206 1106335 -226418243 - MIR SINE MIR -10 252 123 239 202 0 43 chr3 1109058 1109152 -226415426 + CT-rich Low_complexity Low_complexity 4 93 0 2056 115 7 3 chr3 1109378 1109674 -226414904 + AluSq SINE Alu 1 297 -16 315 195 131 22 chr3 1110463 1110638 -226413940 + L1M4 LINE L1 5237 5426 -743 6120 214 48 16 chr3 1110667 1111421 -226413157 - L1MB3 LINE L1 -3 6416 5688 2754 88 3 0 chr3 1111421 1111784 -226412794 - THE1B LTR MaLR 0 364 1 6120 214 48 16 chr3 1111784 1113456 -226411122 - L1MB3 LINE L1 -731 5688 3909 4666 179 55 50 chr3 1113450 1114240 -226410338 - L1MB3 LINE L1 -5065 1319 535 * 2675 22 0 13 chr3 1114240 1114555 -226410023 + AluYa5 SINE Alu 1 311 0 4666 179 55 50 chr3 1114555 1114735 -226409843 - L1MB3 LINE L1 -5849 535 340 243 0 0 0 chr3 1114735 1114762 -226409816 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4666 179 55 50 chr3 1114762 1114919 -226409659 - L1MB3 LINE L1 -6044 340 185 1873 147 31 0 chr3 1115190 1115476 -226409102 + AluSx SINE Alu 1 295 -17 315 71 0 0 chr3 1115479 1115521 -226409057 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr3 1116070 1116092 -226408486 + AT_rich Low_complexity Low_complexity 1 22 0 205 277 20 0 chr3 1116092 1116193 -226408385 + (TA)n Simple_repeat Simple_repeat 1 103 0 569 300 94 9 chr3 1116278 1116511 -226408067 + MIR SINE MIR 9 261 -1 355 244 13 0 chr3 1117471 1117549 -226407029 - MER117 DNA MER1_type -45 152 74 884 200 31 20 chr3 1118370 1118565 -226406013 - MER20 DNA MER1_type 0 219 23 228 333 0 0 chr3 1118569 1118629 -226405949 - MER20 DNA MER1_type -159 60 1 224 290 14 0 chr3 1118836 1118905 -226405673 + (TAG)n Simple_repeat Simple_repeat 1 70 0 255 250 0 42 chr3 1118918 1118990 -226405588 - MIR SINE MIR -76 186 118 203 204 19 0 chr3 1119896 1119950 -226404628 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 306 57 0 chr3 1119997 1120121 -226404457 + MIR SINE MIR 100 230 -32 185 400 0 18 chr3 1122627 1122737 -226401841 + MIR3 SINE MIR 92 199 -9 544 209 52 33 chr3 1122918 1123071 -226401507 - MER103 DNA DNA -1 165 10 476 300 81 37 chr3 1123082 1123545 -226401033 + LTR33 LTR ERVL 8 521 0 225 333 11 33 chr3 1123855 1123945 -226400633 - L2 LINE L2 -10 3262 3175 619 315 22 26 chr3 1124017 1124249 -226400329 - MIR SINE MIR -1 261 31 1284 175 0 9 chr3 1124476 1124704 -226399874 + L1PA16 LINE L1 5683 5908 -258 979 182 35 5 chr3 1124805 1125008 -226399570 + L1PA16 LINE L1 5941 6149 -17 37 23 0 0 chr3 1125011 1125055 -226399523 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr3 1126586 1126639 -226397939 + AT_rich Low_complexity Low_complexity 1 53 0 594 99 0 0 chr3 1126855 1126946 -226397632 + (TC)n Simple_repeat Simple_repeat 1 91 0 24 0 0 0 chr3 1127134 1127158 -226397420 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 1127181 1127223 -226397355 + (CA)n Simple_repeat Simple_repeat 2 43 0 245 182 0 0 chr3 1127842 1127886 -226396692 - L2 LINE L2 0 3313 3270 238 269 9 46 chr3 1128563 1128671 -226395907 - MER103 DNA DNA -55 111 8 1020 239 31 82 chr3 1129040 1129429 -226395149 - MLT1A2 LTR MaLR -5 369 1 386 283 51 36 chr3 1129768 1129906 -226394672 - L2 LINE L2 0 3272 3133 330 355 106 43 chr3 1131485 1132151 -226392427 + L2 LINE L2 2560 3255 -17 208 239 11 34 chr3 1132153 1132241 -226392337 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 261 0 33 chr3 1132243 1132335 -226392243 - L1MC4 LINE L1 -1340 6702 6614 36 77 0 0 chr3 1132335 1132413 -226392165 + AT_rich Low_complexity Low_complexity 1 78 0 2504 134 41 24 chr3 1132430 1132849 -226391729 + MSTB1 LTR MaLR 7 432 0 2007 110 3 14 chr3 1134372 1134679 -226389899 - AluSx SINE Alu 0 306 3 704 243 14 43 chr3 1135055 1135309 -226389269 + L1MC5 LINE L1 6573 6830 -1007 1426 174 9 0 chr3 1135312 1135536 -226389042 + AluSq SINE Alu 3 228 -85 404 230 101 14 chr3 1135711 1135859 -226388719 + L1MC5 LINE L1 7028 7188 -773 206 32 32 0 chr3 1135983 1136014 -226388564 + (CA)n Simple_repeat Simple_repeat 1 32 0 1006 248 56 55 chr3 1136081 1136173 -226388405 + L1MC5 LINE L1 7287 7377 -584 210 37 0 0 chr3 1136173 1136200 -226388378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1006 248 56 55 chr3 1136200 1136471 -226388107 + L1MC5 LINE L1 7377 7646 -315 2284 89 14 0 chr3 1136471 1136763 -226387815 + AluSc SINE Alu 1 296 -13 1006 248 56 55 chr3 1136763 1137036 -226387542 + L1MC5 LINE L1 7646 7925 -36 1755 235 28 11 chr3 1137258 1137717 -226386861 - MLT1C LTR MaLR 0 467 1 273 29 0 0 chr3 1137867 1137901 -226386677 + (CAT)n Simple_repeat Simple_repeat 2 35 0 219 264 31 70 chr3 1138229 1138358 -226386220 + MIR SINE MIR 136 259 -3 25 0 0 0 chr3 1138650 1138675 -226385903 + AT_rich Low_complexity Low_complexity 1 25 0 325 313 223 18 chr3 1138749 1138915 -226385663 + MIR SINE MIR 15 214 -48 201 323 175 21 chr3 1139170 1139359 -226385219 + L2 LINE L2 2831 3048 -224 276 137 0 0 chr3 1139499 1139550 -226385028 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1786 260 46 8 chr3 1140953 1141538 -226383040 + L1 LINE L1 2273 2879 -3267 2463 152 7 7 chr3 1141538 1141972 -226382606 + L1MB1 LINE L1 5733 6166 -2 1955 131 7 0 chr3 1142036 1142353 -226382225 + AluSx SINE Alu 1 319 0 384 306 58 67 chr3 1144284 1144614 -226379964 + Charlie8 DNA MER1_type 211 537 -1880 354 294 108 37 chr3 1144895 1145134 -226379444 - MIR SINE MIR -3 259 6 505 222 0 0 chr3 1146139 1146229 -226378349 + MER45A DNA AcHobo 89 178 0 219 367 33 22 chr3 1146229 1146319 -226378259 + MER91A DNA MER1_type 103 193 -3 222 0 79 0 chr3 1149221 1149259 -226375319 + (TA)n Simple_repeat Simple_repeat 1 41 0 196 411 78 17 chr3 1149387 1149567 -226375011 + L2 LINE L2 2553 2743 -571 183 222 0 0 chr3 1149567 1149612 -226374966 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 1149748 1149770 -226374808 + AT_rich Low_complexity Low_complexity 1 22 0 321 310 159 31 chr3 1149885 1150111 -226374467 + MIR SINE MIR 5 259 -3 1737 168 3 7 chr3 1150371 1150662 -226373916 - AluJb SINE Alu -16 296 7 265 301 12 0 chr3 1151483 1151566 -226373012 - L1MC4 LINE L1 -1340 6702 6619 1076 233 166 14 chr3 1151568 1151912 -226372666 + MSTD LTR MaLR 1 396 0 6554 239 62 20 chr3 1151918 1153578 -226371000 + MSTD-int LTR MaLR 6 1735 0 717 194 70 47 chr3 1153578 1153882 -226370696 + MSTD LTR MaLR 1 311 -54 1676 145 11 0 chr3 1153882 1154151 -226370427 + L1PA16 LINE L1 5886 6157 -9 245 238 0 16 chr3 1154178 1154241 -226370337 + MSTD LTR MaLR 304 365 0 674 236 72 24 chr3 1154817 1155025 -226369553 - MER20 DNA MER1_type -1 218 1 297 0 0 0 chr3 1156382 1156415 -226368163 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 310 9 9 chr3 1157672 1157785 -226366793 + MLT1L LTR MaLR 503 615 0 400 182 10 10 chr3 1159743 1159842 -226364736 + CT-rich Low_complexity Low_complexity 2 100 0 446 181 14 199 chr3 1159959 1160251 -226364327 + LTR38B LTR ERV1 1 238 -372 365 219 35 84 chr3 1160380 1160658 -226363920 + LTR38B LTR ERV1 291 598 0 21 36 0 0 chr3 1161403 1161431 -226363147 + AT_rich Low_complexity Low_complexity 1 28 0 309 360 33 93 chr3 1162348 1162681 -226361897 + L2 LINE L2 2960 3272 0 249 250 104 0 chr3 1163047 1163143 -226361435 + MLT1I LTR MaLR 42 147 -262 390 42 0 0 chr3 1164529 1164577 -226360001 + (TG)n Simple_repeat Simple_repeat 1 48 0 1636 259 75 19 chr3 1164662 1165194 -226359384 + MLT1F1 LTR MaLR 3 564 -3 232 241 96 24 chr3 1165207 1165290 -226359288 - MIR SINE MIR -57 205 117 304 320 109 57 chr3 1165336 1165814 -226358764 - MLT1J LTR MaLR -6 505 3 287 324 150 19 chr3 1166938 1167151 -226357427 + HAL1 LINE L1 1684 1924 -583 287 240 58 58 chr3 1167464 1167618 -226356960 + HAL1b LINE L1 746 899 -449 274 328 44 59 chr3 1167766 1167901 -226356677 + L2 LINE L2 2880 3015 -298 1389 41 6 0 chr3 1167901 1168070 -226356508 - L1PA3 LINE L1 -1 6154 5985 274 328 44 59 chr3 1168070 1168275 -226356303 + L2 LINE L2 3015 3215 -98 24 0 0 0 chr3 1168328 1168352 -226356226 + AT_rich Low_complexity Low_complexity 1 24 0 1899 145 92 3 chr3 1168381 1168739 -226355839 + MLT1B LTR MaLR 1 390 0 222 37 0 0 chr3 1168851 1168878 -226355700 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 1169776 1169798 -226354780 + AT_rich Low_complexity Low_complexity 1 22 0 2484 144 64 7 chr3 1170040 1170476 -226354102 + LOR1b LTR ERV1 1 461 0 362 368 123 19 chr3 1170682 1171098 -226353480 + L2 LINE L2 2264 2722 -592 209 125 0 42 chr3 1171120 1171168 -226353410 + (TATG)n Simple_repeat Simple_repeat 3 48 0 229 342 26 0 chr3 1172048 1172124 -226352454 + L2 LINE L2 2993 3070 -202 225 341 49 0 chr3 1172238 1172320 -226352258 + L2 LINE L2 3227 3312 -1 364 230 34 32 chr3 1172416 1172524 -226352054 - MLT1H LTR MaLR 0 549 433 622 240 27 68 chr3 1172616 1172837 -226351741 - MLT1H LTR MaLR -243 306 95 1712 227 55 49 chr3 1174100 1174593 -226349985 + MLT1D LTR MaLR 5 500 -5 22 35 0 0 chr3 1174650 1174679 -226349899 + AT_rich Low_complexity Low_complexity 1 29 0 551 183 24 0 chr3 1174729 1174855 -226349723 - L1MC4 LINE L1 0 8042 7914 282 263 13 13 chr3 1175014 1175090 -226349488 - MER5C DNA MER1_type -248 76 1 953 112 149 0 chr3 1175127 1175288 -226349290 - MSTA LTR MaLR 0 428 244 424 167 42 0 chr3 1175283 1175355 -226349223 - MSTA LTR MaLR -353 75 1 * 232 309 85 0 chr3 1175483 1175577 -226349001 + L2 LINE L2 3200 3301 -12 2256 118 3 0 chr3 1177594 1177900 -226346678 - AluSq SINE Alu -6 307 1 513 280 60 30 chr3 1178410 1178642 -226345936 - MIR SINE MIR -8 254 16 183 250 0 0 chr3 1179494 1179530 -226345048 + MIR SINE MIR 226 261 -1 481 252 109 7 chr3 1180052 1180199 -226344379 + MIR SINE MIR 15 176 -86 241 296 0 37 chr3 1180703 1180784 -226343794 + MIR SINE MIR 180 257 -5 206 241 0 0 chr3 1180810 1180864 -226343714 + (TA)n Simple_repeat Simple_repeat 2 55 0 2233 77 0 10 chr3 1181466 1181786 -226342792 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 1182025 1182058 -226342520 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr3 1182199 1182242 -226342336 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 1182413 1182443 -226342135 + AT_rich Low_complexity Low_complexity 1 30 0 17784 43 5 3 chr3 1183435 1185664 -226338914 - L1P LINE L1 -3386 2760 529 24 0 0 0 chr3 1185836 1185860 -226338718 + AT_rich Low_complexity Low_complexity 1 24 0 199 273 0 18 chr3 1187603 1187658 -226336920 - L2 LINE L2 -9 3263 3210 2186 92 0 32 chr3 1188632 1188947 -226335631 - AluSx SINE Alu -7 305 1 848 105 7 14 chr3 1189874 1190017 -226334561 - L1PA13 LINE L1 0 6163 6022 388 352 54 37 chr3 1191084 1191436 -226333142 + L2 LINE L2 2312 2669 -645 2899 236 50 4 chr3 1191532 1192248 -226332330 + L1MD2 LINE L1 5390 6138 -221 271 260 39 0 chr3 1192268 1192345 -226332233 + L1MD3 LINE L1 7786 7865 -130 435 332 143 28 chr3 1193682 1193984 -226330594 + L2 LINE L2 2737 3070 -243 742 254 55 15 chr3 1193995 1194196 -226330382 - MER63A DNA MER1_type -1 209 1 307 313 0 0 chr3 1194322 1194402 -226330176 + L2 LINE L2 3234 3313 0 247 229 184 23 chr3 1196736 1196955 -226327623 - Charlie7 DNA MER1_type 0 2612 6 180 152 0 0 chr3 1197388 1197421 -226327157 + (TTA)n Simple_repeat Simple_repeat 2 34 0 872 283 14 0 chr3 1197481 1197700 -226326878 - MER58A DNA MER1_type 0 224 3 1735 178 23 26 chr3 1197779 1198127 -226326451 + MER7A DNA MER2_type 1 345 -1 1255 190 107 33 chr3 1198270 1198607 -226325971 + MLT1A1 LTR MaLR 4 365 0 46 54 0 0 chr3 1199185 1199259 -226325319 + AT_rich Low_complexity Low_complexity 1 74 0 449 350 31 20 chr3 1199841 1200095 -226324483 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr3 1200460 1200510 -226324068 + AT_rich Low_complexity Low_complexity 1 50 0 359 219 109 8 chr3 1201527 1201655 -226322923 + MER103 DNA DNA 11 151 -15 221 376 12 0 chr3 1201689 1201774 -226322804 + L2 LINE L2 3224 3309 -4 428 341 18 66 chr3 1202275 1202501 -226322077 - MIR SINE MIR -30 232 18 1128 275 28 19 chr3 1202986 1203346 -226321232 - L2 LINE L2 -9 3304 2942 700 287 37 0 chr3 1203447 1203635 -226320943 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr3 1203648 1203693 -226320885 - L2 LINE L2 -514 2800 2756 652 286 123 62 chr3 1203701 1204215 -226320363 + MLT1H1 LTR MaLR 4 548 -19 1634 306 114 13 chr3 1204223 1204917 -226319661 - L2 LINE L2 -548 2766 2003 2137 150 28 11 chr3 1205146 1205507 -226319071 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr3 1206112 1206133 -226318445 + AT_rich Low_complexity Low_complexity 1 21 0 557 204 55 0 chr3 1206593 1206774 -226317804 - L1MCa LINE L1 -2889 3537 3347 6291 157 7 26 chr3 1206780 1209001 -226315577 - L1PB1 LINE L1 0 6151 3974 694 221 21 5 chr3 1208976 1209166 -226315412 - L1MCa LINE L1 -3092 3334 3142 * 2300 202 48 20 chr3 1209180 1210029 -226314549 - L1MCa LINE L1 -3495 2931 2033 465 120 100 0 chr3 1210124 1210224 -226314354 - L1MCa LINE L1 -4384 2042 1933 325 393 34 11 chr3 1210250 1210428 -226314150 + L3 LINE CR1 1331 1512 -65 232 247 82 0 chr3 1212419 1212504 -226312074 + L1ME4a LINE L1 5844 5935 -186 21 36 0 0 chr3 1214329 1214357 -226310221 + AT_rich Low_complexity Low_complexity 1 28 0 318 319 86 17 chr3 1216541 1216773 -226307805 - L1MC/D LINE L1 -2036 5772 5525 187 318 0 0 chr3 1216796 1216840 -226307738 - MIR SINE MIR -203 59 16 196 287 103 46 chr3 1216964 1217051 -226307527 + MIR SINE MIR 11 102 -160 2051 124 89 3 chr3 1217070 1217408 -226307170 - THE1C LTR MaLR -8 367 1 237 67 0 0 chr3 1217896 1217926 -226306652 + LTR6A LTR ERV1 73 102 -462 22 0 0 0 chr3 1218825 1218847 -226305731 + AT_rich Low_complexity Low_complexity 1 22 0 1800 158 51 67 chr3 1219033 1219424 -226305154 + MLT2D LTR ERVL 1 534 -20 257 196 0 0 chr3 1219449 1219500 -226305078 + MLT2C1 LTR ERVL 347 397 0 2420 54 3 0 chr3 1219660 1219956 -226304622 + AluY SINE Alu 1 297 -14 2911 76 76 2 chr3 1220122 1220544 -226304034 + MLT2A2 LTR ERVL 1 453 0 474 60 90 0 chr3 1220547 1220681 -226303897 + (TA)n Simple_repeat Simple_repeat 2 147 0 1201 179 35 16 chr3 1221023 1221280 -226303298 + L1PA7 LINE L1 5891 6152 -2 1460 245 78 21 chr3 1221824 1222261 -226302317 + MLT1C LTR MaLR 6 467 0 766 235 131 40 chr3 1222507 1222928 -226301650 + LTR37B LTR ERV1 1 459 -9 729 227 0 6 chr3 1222942 1223105 -226301473 - FRAM SINE Alu -23 153 1 205 97 16 81 chr3 1223487 1223549 -226301029 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 207 69 0 0 chr3 1223761 1223790 -226300788 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 297 193 28 chr3 1223901 1224046 -226300532 - MIR SINE MIR -73 189 21 349 303 9 9 chr3 1224197 1224306 -226300272 + MIR3 SINE MIR 54 162 -46 1279 218 49 35 chr3 1224404 1224831 -226299747 - HsTC2 DNA Tc2 -11 1887 1279 351 0 0 0 chr3 1225854 1225893 -226298685 + (CA)n Simple_repeat Simple_repeat 2 40 0 258 32 0 0 chr3 1225892 1225923 -226298655 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 927 233 43 9 chr3 1225966 1226198 -226298380 + MIR SINE MIR 1 240 -22 929 165 19 19 chr3 1226233 1226445 -226298133 - L1 LINE L1 -823 5323 5112 4760 169 25 6 chr3 1226450 1227348 -226297230 + L1MA8 LINE L1 5364 6278 -13 273 98 0 0 chr3 1227361 1227402 -226297176 + (CA)n Simple_repeat Simple_repeat 2 42 0 317 226 108 0 chr3 1228501 1228594 -226295984 + MER103 DNA DNA 57 159 -7 272 292 124 0 chr3 1229254 1229367 -226295211 + MER117 DNA MER1_type 6 132 -65 278 323 46 8 chr3 1229432 1229559 -226295019 - MIR SINE MIR -48 160 29 2343 83 0 0 chr3 1229582 1229883 -226294695 + AluSc SINE Alu 3 303 -6 2397 71 0 3 chr3 1230509 1230819 -226293759 + AluY SINE Alu 1 309 -2 228 315 77 49 chr3 1231123 1231266 -226293312 - MIR3 SINE MIR -4 204 58 685 259 129 9 chr3 1232707 1232939 -226291639 + MIR SINE MIR 2 261 -1 639 293 122 39 chr3 1234809 1235144 -226289434 - MLT1I LTR MaLR -5 404 42 234 204 0 19 chr3 1235246 1235300 -226289278 + (CA)n Simple_repeat Simple_repeat 2 54 0 276 100 0 0 chr3 1235300 1235340 -226289238 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2116 249 42 41 chr3 1235552 1236376 -226288202 + L1MD2 LINE L1 3750 4574 -1572 893 216 0 39 chr3 1236399 1236631 -226287947 - AluJo SINE Alu -6 306 84 757 158 8 0 chr3 1236734 1236854 -226287724 - FLAM_C SINE Alu -22 121 1 331 277 52 78 chr3 1236892 1237123 -226287455 + L1MD2 LINE L1 4579 4803 -1343 24 85 0 0 chr3 1237140 1237199 -226287379 + AT_rich Low_complexity Low_complexity 1 59 0 3580 238 44 32 chr3 1237204 1238654 -226285924 + L1MD2 LINE L1 4793 6355 -4 * 5291 183 28 13 chr3 1238651 1238782 -226285796 + L1MA8 LINE L1 4195 4323 -1968 1910 132 3 56 chr3 1238782 1239101 -226285477 - AluSc SINE Alu -5 304 3 5291 183 28 13 chr3 1239101 1239843 -226284735 + L1MA8 LINE L1 4323 5052 -1239 2184 165 30 37 chr3 1239843 1240303 -226284275 + MSTB2 LTR MaLR 1 457 0 5291 183 28 13 chr3 1240303 1241498 -226283080 + L1MA8 LINE L1 5052 6291 0 22 0 0 0 chr3 1242185 1242207 -226282371 + AT_rich Low_complexity Low_complexity 1 22 0 200 327 0 0 chr3 1243448 1243503 -226281075 - MIR SINE MIR -150 112 58 366 303 53 53 chr3 1244541 1244729 -226279849 + L2 LINE L2 2584 2771 -543 3923 150 34 4 chr3 1245001 1245714 -226278864 - L1MA4 LINE L1 -6 6294 5561 322 287 60 47 chr3 1246173 1246323 -226278255 + L2 LINE L2 3162 3313 0 423 265 61 30 chr3 1246430 1246562 -226278016 - LTR16C LTR ERVL 0 491 356 1706 112 4 7 chr3 1247292 1247569 -226277009 - L1MA5A LINE L1 -1 6296 6021 187 296 37 19 chr3 1247893 1247947 -226276631 + L2 LINE L2 3134 3188 -84 354 322 22 0 chr3 1249021 1249111 -226275467 + MER5A DNA MER1_type 10 101 -88 525 366 50 9 chr3 1249198 1249515 -226275063 + MLT1J LTR MaLR 3 332 -179 25 0 0 0 chr3 1251374 1251399 -226273179 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 24 chr3 1251878 1251907 -226272671 + AT_rich Low_complexity Low_complexity 1 30 -11 1184 15 0 0 chr3 1251907 1252044 -226272534 - L1PA4 LINE L1 -8 6147 6011 31 0 0 24 chr3 1252044 1252056 -226272522 + AT_rich Low_complexity Low_complexity 30 41 0 239 325 38 12 chr3 1252734 1252814 -226271764 + MIR SINE MIR 34 115 -147 285 29 0 0 chr3 1252852 1252886 -226271692 + (GA)n Simple_repeat Simple_repeat 1 34 0 2121 305 43 46 chr3 1252894 1254639 -226269939 - L1M4 LINE L1 -888 5258 3520 608 241 91 37 chr3 1254978 1255219 -226269359 + Charlie5 DNA MER1_type 2234 2487 -125 246 301 0 0 chr3 1255245 1255318 -226269260 - L1M4 LINE L1 -2056 4090 4018 721 359 31 29 chr3 1255332 1255912 -226268666 + L1PA13 LINE L1 788 1368 -6206 471 300 52 14 chr3 1255896 1256170 -226268408 + L1PA13 LINE L1 2069 2303 -5271 * 4287 231 35 18 chr3 1256408 1257625 -226266953 + L1PA13 LINE L1 2188 3439 -4145 2076 143 0 0 chr3 1257625 1257926 -226266652 + AluSx SINE Alu 3 303 -9 4287 231 35 18 chr3 1257926 1258109 -226266469 + L1PA13 LINE L1 3439 3617 -3967 24 0 0 0 chr3 1258309 1258333 -226266245 + AT_rich Low_complexity Low_complexity 1 24 0 2896 252 50 14 chr3 1258471 1259484 -226265094 + L1PA13 LINE L1 3599 4648 -2936 * 16282 191 32 37 chr3 1259477 1263162 -226261416 - L1PB1 LINE L1 0 6867 3167 7107 6 0 0 chr3 1263162 1263956 -226260622 + L1PA2 LINE L1 5344 6138 -17 16282 191 32 37 chr3 1263956 1266324 -226258254 - L1PB1 LINE L1 -3700 3167 993 273 29 0 0 chr3 1266324 1266358 -226258220 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 16282 191 32 37 chr3 1266358 1267346 -226257232 - L1PB1 LINE L1 -5874 993 2 246 356 130 14 chr3 1267402 1267618 -226256960 + L2 LINE L2 2830 3070 -202 271 311 75 112 chr3 1268214 1268784 -226255794 + LTR67 LTR ERVL 4 552 -5 445 305 41 35 chr3 1269031 1269228 -226255350 + MIR SINE MIR 65 262 0 230 363 50 45 chr3 1270060 1270239 -226254339 - L2 LINE L2 -522 2792 2613 22 0 0 0 chr3 1270628 1270650 -226253928 + AT_rich Low_complexity Low_complexity 1 22 0 2303 123 43 6 chr3 1270784 1271135 -226253443 + THE1B LTR MaLR 1 364 0 1345 215 49 89 chr3 1271912 1272438 -226252140 + MLT1D LTR MaLR 1 505 0 2166 109 3 0 chr3 1273905 1274199 -226250379 - AluSx SINE Alu -17 295 1 199 298 229 0 chr3 1274329 1274460 -226250118 - MIR SINE MIR -53 209 49 1039 105 62 0 chr3 1275184 1275346 -226249232 - L1PA16 LINE L1 -16 6150 5979 371 221 171 57 chr3 1275447 1275587 -226248991 - MER5B DNA MER1_type -22 156 1 348 228 38 13 chr3 1275657 1275736 -226248842 - MER94 DNA DNA -53 81 1 319 317 14 62 chr3 1275738 1275883 -226248695 - MER5A DNA MER1_type -24 165 28 4043 189 40 0 chr3 1275900 1276681 -226247897 - L1MC1 LINE L1 0 6333 5522 18728 30 0 0 chr3 1476681 1478954 -226045624 - L1P LINE L1 -840 5306 3034 246 266 31 0 chr3 1480551 1480615 -226043963 - MLT2D LTR ERVL -118 296 231 758 201 85 0 chr3 1484257 1484421 -226040157 - MER5B DNA MER1_type 0 178 1 243 200 50 62 chr3 1484438 1484518 -226040060 - Charlie8 DNA MER1_type 0 2417 2339 359 307 94 40 chr3 1484976 1485178 -226039400 + MIR SINE MIR 49 261 -1 523 233 39 0 chr3 1485580 1485709 -226038869 + MLT1C LTR MaLR 34 167 -300 7086 39 8 3 chr3 1485715 1486764 -226037814 + L1PA4 LINE L1 5139 6155 0 832 241 84 45 chr3 1486764 1487050 -226037528 + MLT1C LTR MaLR 171 467 0 311 183 14 0 chr3 1487574 1487645 -226036933 - L1MDa LINE L1 -4351 2189 2118 2174 203 51 75 chr3 1487749 1488572 -226036006 - L1MDa LINE L1 -4441 2099 1297 2617 255 50 22 chr3 1488587 1489261 -226035317 - L1MDa LINE L1 -5831 709 17 1634 178 3 28 chr3 1490234 1490520 -226034058 - AluJb SINE Alu -31 281 3 1869 179 42 8 chr3 1490849 1491202 -226033376 - MLT1A1 LTR MaLR 0 365 1 1870 142 64 0 chr3 1491408 1491689 -226032889 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 1491838 1491869 -226032709 + AT_rich Low_complexity Low_complexity 1 31 0 228 167 0 0 chr3 1491902 1491950 -226032628 + LTR66 LTR ERVL 392 439 -171 264 122 0 0 chr3 1491952 1491993 -226032585 + (TA)n Simple_repeat Simple_repeat 1 41 0 237 164 164 0 chr3 1491995 1492056 -226032522 + MIR SINE MIR 70 140 -122 230 204 0 0 chr3 1492083 1492127 -226032451 + Tigger2 DNA MER2_type 26 69 -2649 * 2416 148 60 7 chr3 1492114 1492534 -226032044 + Tigger2 DNA MER2_type 2271 2712 -6 226 310 0 0 chr3 1492545 1492603 -226031975 + MIR SINE MIR 156 213 -49 2399 67 3 3 chr3 1492786 1493084 -226031494 - AluY SINE Alu -13 298 1 186 43 0 0 chr3 1493201 1493224 -226031354 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 435 239 9 18 chr3 1493644 1493757 -226030821 - MLT1E3 LTR MaLR -459 165 54 228 342 0 26 chr3 1496347 1496423 -226028155 + MIR SINE MIR 20 93 -115 458 296 23 8 chr3 1496523 1496655 -226027923 + MIR SINE MIR 127 260 -2 195 368 0 0 chr3 1496878 1496946 -226027632 + L2 LINE L2 3205 3272 0 418 321 93 19 chr3 1497200 1497362 -226027216 + MIR3 SINE MIR 20 193 -15 323 325 84 19 chr3 1497555 1497709 -226026869 + MIR SINE MIR 22 185 -77 185 339 36 36 chr3 1497899 1498011 -226026567 - L2 LINE L2 -3 3310 3199 28 61 0 0 chr3 1498131 1498180 -226026398 + AT_rich Low_complexity Low_complexity 1 49 0 829 307 107 58 chr3 1498315 1499213 -226025365 - L2 LINE L2 0 3313 2375 672 224 153 10 chr3 1499223 1499419 -226025159 - MER58A DNA MER1_type 0 224 1 1069 324 166 14 chr3 1499423 1500146 -226024432 - L2 LINE L2 -947 2367 1535 285 277 0 32 chr3 1500283 1500377 -226024201 - MER63 DNA MER1_type -312 750 34 299 206 0 0 chr3 1500526 1500589 -226023989 + MLT1E2 LTR MaLR 548 610 -16 733 277 0 21 chr3 1501067 1501255 -226023323 + MIR SINE MIR 2 185 -77 263 297 0 0 chr3 1501749 1501813 -226022765 + MIR SINE MIR 180 243 -19 3157 82 9 24 chr3 1502258 1502709 -226021869 + MLT2A1 LTR ERVL 1 444 0 231 36 0 0 chr3 1502785 1502813 -226021765 + (CA)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr3 1502839 1502865 -226021713 + (CA)n Simple_repeat Simple_repeat 1 26 0 186 301 126 10 chr3 1503789 1503892 -226020686 - L3 LINE CR1 -878 699 585 303 311 120 70 chr3 1504030 1504471 -226020107 + L2 LINE L2 2335 2797 -517 336 317 83 22 chr3 1504720 1504900 -226019678 + L2 LINE L2 3118 3308 -5 279 343 26 82 chr3 1504900 1505168 -226019410 - L3 LINE CR1 -259 1318 1066 282 287 33 16 chr3 1506255 1506377 -226018201 + GA-rich Low_complexity Low_complexity 3 126 0 265 333 61 10 chr3 1506976 1507075 -226017503 - L2 LINE L2 0 3272 3169 * 942 275 83 73 chr3 1507072 1507597 -226016981 - L2 LINE L2 -2 3311 2777 777 118 0 0 chr3 1507624 1507734 -226016844 - MSTB1 LTR MaLR -322 110 1 1343 293 124 15 chr3 1507780 1508448 -226016130 - L2 LINE L2 -629 2685 1945 207 419 26 21 chr3 1508618 1508809 -226015769 - L2 LINE L2 -212 3060 2869 2430 200 34 20 chr3 1509152 1509707 -226014871 + L1MB3 LINE L1 5615 6177 -6 338 260 42 21 chr3 1509864 1509960 -226014618 - MLT1L LTR MaLR -221 394 297 183 250 0 0 chr3 1510142 1510210 -226014368 + C-rich Low_complexity Low_complexity 1 68 0 661 303 31 12 chr3 1510343 1510597 -226013981 + L1PA12 LINE L1 1 259 -7322 6533 235 32 17 chr3 1510609 1513257 -226011321 + L1PA12 LINE L1 1924 4624 -2960 2754 22 0 0 chr3 1513257 1513568 -226011010 + AluYa5 SINE Alu 1 311 0 6533 235 32 17 chr3 1513568 1513743 -226010835 + L1PA12 LINE L1 4624 4795 -2789 632 157 0 17 chr3 1513843 1514015 -226010563 + G-rich Low_complexity Low_complexity 1 169 0 1881 155 0 7 chr3 1514348 1514639 -226009939 - AluSg SINE Alu -19 291 3 26 0 0 0 chr3 1515316 1515342 -226009236 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 1516002 1516025 -226008553 + AT_rich Low_complexity Low_complexity 1 23 0 383 327 107 58 chr3 1516470 1517057 -226007521 - L2 LINE L2 0 3313 2705 245 211 47 39 chr3 1517083 1517211 -226007367 + (CATATA)n Simple_repeat Simple_repeat 3 131 0 204 323 31 0 chr3 1517743 1517808 -226006770 + L2 LINE L2 3247 3313 0 453 280 40 13 chr3 1518090 1518240 -226006338 + L2 LINE L2 3154 3307 -6 1315 207 28 69 chr3 1518536 1518898 -226005680 - MER82 DNA MER2_type -305 348 2 206 257 46 9 chr3 1518899 1519008 -226005570 + (TA)n Simple_repeat Simple_repeat 2 114 0 339 25 0 0 chr3 1519246 1519286 -226005292 + (TA)n Simple_repeat Simple_repeat 1 40 0 962 77 0 8 chr3 1520210 1520340 -226004238 + L1PA10 LINE L1 6040 6168 0 228 35 0 0 chr3 1520425 1520454 -226004124 + (CA)n Simple_repeat Simple_repeat 2 30 0 2185 121 3 0 chr3 1520631 1520938 -226003640 + AluSx SINE Alu 1 308 -4 1817 119 159 68 chr3 1521150 1521520 -226003058 - MER4A LTR ERV1 0 664 261 638 121 0 10 chr3 1521520 1521619 -226002959 - MER4A LTR ERV1 -566 98 1 805 172 79 16 chr3 1521619 1521916 -226002662 + LTR54B LTR ERV1 54 405 -105 2396 102 83 137 chr3 1521930 1522507 -226002071 - LTR10A LTR ERV1 -63 546 1 581 150 9 9 chr3 1522507 1522620 -226001958 + LTR54 LTR ERV1 394 506 -4 520 296 51 5 chr3 1524470 1524666 -225999912 + L1ME LINE L1 5466 5670 -500 7295 97 15 2 chr3 1524764 1525837 -225998741 + L1P LINE L1 1850 2936 -3210 26 0 0 0 chr3 1526073 1526099 -225998479 + AT_rich Low_complexity Low_complexity 1 26 0 566 236 45 68 chr3 1526193 1526413 -225998165 + MIR SINE MIR 12 226 -36 2194 127 0 7 chr3 1526413 1526721 -225997857 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 1527378 1527407 -225997171 + AT_rich Low_complexity Low_complexity 1 29 0 2189 95 3 0 chr3 1527999 1528293 -225996285 + AluSp SINE Alu 1 295 -18 909 93 0 0 chr3 1528295 1528424 -225996154 + (TA)n Simple_repeat Simple_repeat 2 130 0 1176 185 88 55 chr3 1528573 1528936 -225995642 - MER39 LTR ERV1 -25 682 308 246 242 30 61 chr3 1528909 1529008 -225995570 - LTR48B LTR ERV1 -544 100 5 * 219 302 70 12 chr3 1530293 1530379 -225994199 - L2 LINE L2 -458 2856 2766 2384 93 3 0 chr3 1530876 1531186 -225993392 - AluSp SINE Alu -1 312 2 14732 96 4 16 chr3 1531591 1533765 -225990813 + HERVH LTR ERV1 845 2992 -4721 897 142 20 0 chr3 1533751 1533899 -225990679 + HERVH LTR ERV1 3140 3290 -4423 * 3254 113 6 8 chr3 1533889 1534392 -225990186 + HERVH LTR ERV1 3492 3993 -3720 4406 138 0 1 chr3 1534396 1535057 -225989521 + HERVH LTR ERV1 4490 5149 -2564 1363 113 38 0 chr3 1535058 1535270 -225989308 + HERVH LTR ERV1 5600 5819 -1894 * 2342 103 48 13 chr3 1535268 1535647 -225988931 + HERVH LTR ERV1 7322 7713 0 2794 78 92 5 chr3 1535647 1536059 -225988519 + LTR7 LTR ERV1 1 448 -2 308 247 6 137 chr3 1536097 1536279 -225988299 - L1MEd LINE L1 -4481 1648 1491 268 302 70 43 chr3 1536396 1537016 -225987562 - L1MEd LINE L1 -4618 1511 889 504 205 117 23 chr3 1537027 1537198 -225987380 - MER53 DNA DNA -2 187 1 27 73 0 0 chr3 1537235 1537290 -225987288 + AT_rich Low_complexity Low_complexity 1 55 0 1226 235 88 122 chr3 1537384 1538006 -225986572 + MLT1E1 LTR MaLR 3 603 -51 555 243 108 47 chr3 1539160 1539456 -225985122 + HAL1 LINE L1 1251 1564 -943 573 136 17 8 chr3 1539469 1539587 -225984991 + GA-rich Low_complexity Low_complexity 2 120 0 259 304 38 0 chr3 1540582 1540661 -225983917 - L2 LINE L2 -37 3276 3195 2764 99 0 0 chr3 1541129 1541493 -225983085 + THE1B LTR MaLR 1 364 0 2713 87 3 3 chr3 1542141 1542511 -225982067 + L1PA8 LINE L1 5795 6164 -8 210 37 0 0 chr3 1542790 1542817 -225981761 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 194 0 29 chr3 1544146 1544316 -225980262 - FRAM SINE Alu -12 164 1 3259 197 43 64 chr3 1544343 1544850 -225979728 + L1MC3 LINE L1 6893 7374 -411 1096 204 42 4 chr3 1544850 1545110 -225979468 + L1PB4 LINE L1 5887 6156 0 3259 197 43 64 chr3 1545110 1545494 -225979084 + L1MC3 LINE L1 7374 7765 -20 2456 84 3 0 chr3 1545628 1545937 -225978641 - AluSp SINE Alu -3 310 1 2237 104 3 0 chr3 1548448 1548746 -225975832 + AluY SINE Alu 1 299 -12 278 290 161 0 chr3 1549811 1549904 -225974674 + MIR SINE MIR 52 159 -103 904 237 50 80 chr3 1549908 1550284 -225974294 + MLT1C LTR MaLR 1 365 -102 458 241 0 18 chr3 1550627 1550739 -225973839 + MLT1C LTR MaLR 358 467 0 1048 92 7 0 chr3 1551386 1551528 -225973050 + L1P LINE L1 2 144 -6002 1057 30 0 23 chr3 1551534 1551665 -225972913 + L1P1 LINE L1 5517 5644 -511 2297 90 0 0 chr3 1551666 1551954 -225972624 + AluY SINE Alu 10 297 -14 1770 176 115 16 chr3 1551954 1552449 -225972129 - L1M4c LINE L1 -4334 2048 1374 312 27 0 0 chr3 1552461 1552498 -225972080 + (TG)n Simple_repeat Simple_repeat 2 38 0 1993 172 112 84 chr3 1552900 1553546 -225971032 + MER4A LTR ERV1 1 664 0 1604 186 28 34 chr3 1553735 1554062 -225970516 + MER21B LTR ERV1 1 325 -538 1809 238 49 10 chr3 1554123 1554531 -225970047 + MER21B LTR ERV1 425 848 -15 435 321 93 22 chr3 1555388 1555805 -225968773 + L1ME4a LINE L1 5673 6119 -2 255 152 0 0 chr3 1556689 1556735 -225967843 + A-rich Low_complexity Low_complexity 1 46 0 367 328 15 15 chr3 1556867 1556998 -225967580 - L2 LINE L2 0 3313 3183 1185 231 9 47 chr3 1557588 1557908 -225966670 + L1MD2 LINE L1 6023 6330 -29 23 33 0 0 chr3 1559647 1559677 -225964901 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 1559979 1560017 -225964561 + AT_rich Low_complexity Low_complexity 1 38 0 2078 92 7 0 chr3 1560622 1560895 -225963683 + AluSc SINE Alu 2 276 -33 180 0 0 0 chr3 1560937 1560957 -225963621 + (GA)n Simple_repeat Simple_repeat 2 21 0 3576 187 29 22 chr3 1561417 1562826 -225961752 + L1MA9 LINE L1 4642 6176 -136 210 37 0 0 chr3 1562826 1562853 -225961725 + (CA)n Simple_repeat Simple_repeat 2 28 0 3576 187 29 22 chr3 1562853 1562991 -225961587 + L1MA9 LINE L1 6176 6312 0 22 0 0 0 chr3 1564302 1564324 -225960254 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 1564682 1564719 -225959859 + AT_rich Low_complexity Low_complexity 1 37 0 803 182 127 0 chr3 1565069 1565216 -225959362 - MSTA LTR MaLR -1 427 260 995 175 11 6 chr3 1565216 1565399 -225959179 - LTR2 LTR ERV1 0 449 266 659 203 1 0 chr3 1565456 1565684 -225958894 - Harlequin LTR ERV1 -1 6895 6699 1457 67 5 10 chr3 1566428 1566636 -225957942 + LTR7 LTR ERV1 242 448 -2 519 272 69 6 chr3 1566715 1566888 -225957690 + MER5A DNA MER1_type 4 187 -2 1027 183 0 0 chr3 1567164 1567333 -225957245 + FRAM SINE Alu 1 169 -7 754 248 96 0 chr3 1567359 1567557 -225957021 + MIR SINE MIR 46 262 0 2091 160 77 15 chr3 1567785 1568186 -225956392 - MSTB LTR MaLR 0 426 1 1648 185 0 43 chr3 1568506 1568830 -225955748 - AluJb SINE Alu 0 312 3 3138 208 64 29 chr3 1569707 1570492 -225954086 + L1MC2 LINE L1 5416 6227 -117 3690 169 51 34 chr3 1570922 1571091 -225953487 - L1MA6 LINE L1 -10 7311 7147 2291 168 20 0 chr3 1571091 1571484 -225953094 - MER57A LTR ERV1 0 403 3 2149 120 3 7 chr3 1571487 1571796 -225952782 + AluSx SINE Alu 3 310 -2 3690 169 51 34 chr3 1571796 1572056 -225952522 - L1MA6 LINE L1 -175 7146 6892 2384 115 16 19 chr3 1572056 1572430 -225952148 + THE1C LTR MaLR 3 375 0 3690 169 51 34 chr3 1572430 1572831 -225951747 - L1MA6 LINE L1 -429 6892 6461 * 10441 230 45 29 chr3 1572822 1573395 -225951183 - L1MA6 LINE L1 -1400 5767 5204 189 0 0 0 chr3 1573395 1573416 -225951162 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 10441 230 45 29 chr3 1573416 1577387 -225947191 - L1MA6 LINE L1 -1963 5204 1472 1497 305 58 53 chr3 1577413 1578055 -225946523 - L1MA6 LINE L1 -6144 1024 1 196 307 51 117 chr3 1578194 1578331 -225946247 + MIR3 SINE MIR 30 157 -51 1115 36 0 0 chr3 1578701 1578838 -225945740 - L1PA4 LINE L1 -3 6152 6016 631 275 13 61 chr3 1579217 1579446 -225945132 - MER20 DNA MER1_type -1 218 1 1152 199 55 65 chr3 1579536 1579952 -225944626 - L1MB8 LINE L1 -9 6169 5758 408 289 79 3 chr3 1580054 1580383 -225944195 - L1MEc LINE L1 -3653 2562 2209 301 311 88 51 chr3 1580394 1580445 -225944133 - L1MEc LINE L1 -4159 2237 2189 7072 59 6 1 chr3 1580445 1581544 -225943034 + L1PA8 LINE L1 5070 6172 0 301 311 88 51 chr3 1581544 1581823 -225942755 - L1MEc LINE L1 -4207 2189 1895 2769 92 92 5 chr3 1581825 1582237 -225942341 + LTR7 LTR ERV1 1 448 -2 4411 87 42 5 chr3 1582239 1582903 -225941675 + HERVH LTR ERV1 1 689 -7024 32 26 0 0 chr3 1584014 1584053 -225940525 + AT_rich Low_complexity Low_complexity 1 39 0 663 295 92 4 chr3 1584165 1584426 -225940152 + MLT1F LTR MaLR 1 284 -258 303 193 45 23 chr3 1584420 1584508 -225940070 + MLT1F LTR MaLR 474 563 -4 * 333 269 0 42 chr3 1584593 1584712 -225939866 + MLT1-int LTR MaLR 437 550 -821 1682 64 0 0 chr3 1584924 1585127 -225939451 - AluY SINE Alu -11 300 98 804 211 36 135 chr3 1585177 1585598 -225938980 - MLT1B LTR MaLR -8 382 4 1605 230 44 80 chr3 1585605 1586469 -225938109 - MLT1C-int LTR MaLR -4 1705 557 1073 164 13 4 chr3 1586453 1586716 -225937862 - MLT1C-int LTR MaLR -988 383 1 * 1133 206 124 79 chr3 1586716 1587158 -225937420 - MLT1C LTR MaLR 0 467 6 27 49 0 0 chr3 1587219 1587260 -225937318 + AT_rich Low_complexity Low_complexity 1 41 0 328 304 14 40 chr3 1587302 1587450 -225937128 + L1ME LINE L1 3682 3825 -2321 246 276 71 8 chr3 1587454 1587581 -225936997 - MLT1J LTR MaLR -3 508 374 270 314 20 52 chr3 1587686 1587839 -225936739 - MLT1J LTR MaLR -312 199 52 304 289 60 24 chr3 1588546 1588712 -225935866 + L1ME LINE L1 4545 4716 -1430 8403 38 2 0 chr3 1588759 1589830 -225934748 - L1PA3 LINE L1 -1782 4364 3292 8660 23 0 0 chr3 1589830 1591618 -225932960 + L1PA3 LINE L1 4365 6153 -2 29 47 0 0 chr3 1591876 1591919 -225932659 + AT_rich Low_complexity Low_complexity 1 43 0 254 272 39 39 chr3 1593101 1593204 -225931374 + L1ME LINE L1 5727 5829 -333 1439 286 12 45 chr3 1593430 1593940 -225930638 + L1MA4A LINE L1 1 493 -6356 4231 208 24 35 chr3 1594002 1594783 -225929795 + L1MA4A LINE L1 1168 1935 -4914 2260 114 0 16 chr3 1594783 1595100 -225929478 + AluSx SINE Alu 1 312 0 4231 208 24 35 chr3 1595100 1595397 -225929181 + L1MA4A LINE L1 1935 2234 -4615 4825 141 6 4 chr3 1595440 1596263 -225928315 + L1PA16 LINE L1 5329 6153 -13 9020 180 45 10 chr3 1596287 1597424 -225927154 + L1MA4A LINE L1 3881 4976 -2029 2547 65 0 0 chr3 1597424 1597732 -225926846 + AluY SINE Alu 1 308 -3 9020 180 45 10 chr3 1597732 1598670 -225925908 + L1MA4A LINE L1 4976 5879 -1126 1467 118 5 0 chr3 1598670 1598873 -225925705 + AluSq SINE Alu 101 304 -9 9020 180 45 10 chr3 1598873 1599649 -225924929 + L1MA4A LINE L1 5879 6821 -184 403 177 10 42 chr3 1599650 1599746 -225924832 + L1MA4A LINE L1 6890 6982 -23 249 250 31 0 chr3 1600680 1600744 -225923834 - MLT2D LTR ERVL -118 296 231 237 192 39 0 chr3 1601052 1601104 -225923474 - MLT2D LTR ERVL -130 284 231 324 0 0 0 chr3 1601289 1601325 -225923253 + (GA)n Simple_repeat Simple_repeat 2 37 0 355 348 61 6 chr3 1602498 1602662 -225921916 - L1ME LINE L1 -348 5822 5650 1453 158 9 0 chr3 1603010 1603231 -225921347 - AluSg/x SINE Alu -25 287 65 6729 122 14 53 chr3 1603232 1604144 -225920434 - L1M1 LINE L1 -4670 2895 1949 1889 186 0 3 chr3 1604144 1604451 -225920127 - AluJb SINE Alu -6 306 1 6729 122 14 53 chr3 1604451 1604472 -225920106 - L1M1 LINE L1 -5616 1949 1929 2171 108 4 0 chr3 1604472 1604751 -225919827 - AluSp SINE Alu -33 280 1 6729 122 14 53 chr3 1604751 1605071 -225919507 - L1M1 LINE L1 -5636 1929 1690 823 234 6 33 chr3 1605071 1605428 -225919150 - LTR2 LTR ERV1 0 449 3 801 154 0 0 chr3 1605430 1605566 -225919012 - Harlequin LTR ERV1 0 6896 6761 29339 163 8 19 chr3 1605623 1610930 -225913648 - Harlequin LTR ERV1 -1297 6516 1266 2721 164 30 6 chr3 1610931 1611425 -225913153 - Harlequin LTR ERV1 -6796 1017 512 2095 170 3 13 chr3 1611506 1611894 -225912684 - Harlequin LTR ERV1 -6512 384 1 850 201 5 5 chr3 1611894 1612078 -225912500 - LTR2 LTR ERV1 0 449 266 1186 155 71 8 chr3 1612147 1612386 -225912192 - MSTA LTR MaLR -164 264 11 22 0 0 0 chr3 1612989 1613011 -225911567 + AT_rich Low_complexity Low_complexity 1 22 0 1749 117 79 10 chr3 1613303 1613594 -225910984 + L1PA10 LINE L1 5858 6168 0 2800 222 26 39 chr3 1615470 1615854 -225908724 + L1ME2 LINE L1 4867 5254 -910 2203 138 8 114 chr3 1615854 1615995 -225908583 - Tigger2a DNA MER2_type -2274 434 280 1385 184 54 22 chr3 1615995 1616272 -225908306 - AluJo SINE Alu -26 286 1 2203 138 8 114 chr3 1616272 1616614 -225907964 - Tigger2a DNA MER2_type -2428 280 2 2800 222 26 39 chr3 1616614 1616861 -225907717 + L1ME2 LINE L1 5254 5503 -661 1701 197 77 64 chr3 1616861 1617358 -225907220 - MLT1D LTR MaLR -2 503 1 2800 222 26 39 chr3 1617358 1618004 -225906574 + L1ME2 LINE L1 5503 6148 -16 21 0 0 0 chr3 1618426 1618447 -225906131 + AT_rich Low_complexity Low_complexity 1 21 0 1117 215 11 21 chr3 1620607 1620886 -225903692 - MLT1C LTR MaLR -6 461 186 647 183 82 67 chr3 1620901 1621109 -225903469 - MLT1C LTR MaLR -256 211 1 208 304 0 0 chr3 1621340 1621396 -225903182 + L2 LINE L2 3217 3272 0 1547 169 177 14 chr3 1621430 1621791 -225902787 + MSTA LTR MaLR 9 428 0 191 185 0 19 chr3 1622840 1622894 -225901684 + (TA)n Simple_repeat Simple_repeat 2 54 0 282 290 45 142 chr3 1623085 1623416 -225901162 + L2 LINE L2 2969 3267 -5 1870 125 3 10 chr3 1624629 1624917 -225899661 - L1PA11 LINE L1 -1 6173 5888 21 0 0 0 chr3 1625120 1625141 -225899437 + AT_rich Low_complexity Low_complexity 1 21 0 1135 248 95 24 chr3 1625180 1626113 -225898465 - L1ME1 LINE L1 -18 6148 5122 6348 133 17 8 chr3 1626158 1627457 -225897121 - L1MA1 LINE L1 -8 6294 4982 2007 141 26 32 chr3 1627481 1627858 -225896720 + THE1C LTR MaLR 1 375 0 8216 132 26 31 chr3 1627884 1629312 -225895266 + THE1C-int LTR MaLR 161 1580 0 1314 158 13 18 chr3 1629312 1629540 -225895038 + THE1C LTR MaLR 1 227 -148 658 130 10 0 chr3 1629542 1629642 -225894936 - LTR28 LTR ERV1 -919 101 1 18109 177 37 12 chr3 1629642 1633039 -225891539 - L1M1 LINE L1 -4077 3488 7 2434 262 56 40 chr3 1633037 1633618 -225890960 - L1ME1 LINE L1 -1080 5066 4496 * 1733 173 52 25 chr3 1633618 1633983 -225890595 - THE1C LTR MaLR 0 375 1 2434 262 56 40 chr3 1633983 1634610 -225889968 - L1ME1 LINE L1 -1650 4496 3839 1048 245 31 0 chr3 1634629 1634682 -225889896 - L1ME1 LINE L1 -3408 2738 2688 448 16 33 0 chr3 1634682 1634743 -225889835 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1048 245 31 0 chr3 1634743 1634975 -225889603 - L1ME1 LINE L1 -3458 2688 2444 1150 235 93 55 chr3 1634988 1635342 -225889236 + L1ME1 LINE L1 4682 5021 -1145 1926 154 28 25 chr3 1635342 1635705 -225888873 - THE1B LTR MaLR 0 364 1 1150 235 93 55 chr3 1635705 1636380 -225888198 + L1ME1 LINE L1 5021 5735 -431 24321 107 14 2 chr3 1636388 1640856 -225883722 - L1PA7 LINE L1 -4 6465 1963 235 252 7 43 chr3 1640891 1641030 -225883548 + (CACCC)n Simple_repeat Simple_repeat 2 135 0 186 192 0 0 chr3 1641033 1641085 -225883493 + C-rich Low_complexity Low_complexity 1 52 0 11692 126 14 18 chr3 1641189 1643254 -225881324 - L1PA7 LINE L1 -4379 2082 5 1437 241 32 15 chr3 1643262 1643672 -225880906 + L1ME1 LINE L1 5736 6152 -14 198 286 55 22 chr3 1643750 1643841 -225880737 - L2 LINE L2 -534 2780 2687 180 0 0 0 chr3 1644041 1644061 -225880517 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5776 22 1 0 chr3 1644061 1644731 -225879847 - L1PA3 LINE L1 -11 6144 5474 20663 50 51 4 chr3 1644831 1647499 -225877079 - L1P LINE L1 -3352 2794 2 6220 199 34 14 chr3 1647721 1648971 -225875607 - MSTB-int LTR MaLR -375 1276 1 1316 183 29 17 chr3 1648971 1649212 -225875366 - MSTB LTR MaLR 0 426 183 2131 175 51 24 chr3 1649212 1649703 -225874875 - MER75 DNA T2_type 0 514 11 428 172 0 0 chr3 1649685 1649749 -225874829 - MER75 DNA T2_type -443 71 8 * 1008 193 11 16 chr3 1649749 1649936 -225874642 - MSTB LTR MaLR -240 186 1 803 180 22 51 chr3 1650638 1650816 -225873762 + MER58A DNA MER1_type 45 217 -7 21 0 0 0 chr3 1651208 1651229 -225873349 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 150 22 chr3 1651257 1651437 -225873141 + L3 LINE CR1 1374 1576 -1 280 276 200 5 chr3 1651884 1652094 -225872484 - L1ME4a LINE L1 -113 6008 5758 2185 171 55 0 chr3 1653559 1653957 -225870621 + MSTB LTR MaLR 1 420 -6 349 273 116 0 chr3 1654497 1654618 -225869960 + MIR SINE MIR 65 199 -63 185 397 0 0 chr3 1656222 1656290 -225868288 + L2 LINE L2 2794 2861 -453 190 373 15 0 chr3 1657800 1657867 -225866711 + MIR3 SINE MIR 89 156 -52 211 284 54 0 chr3 1657919 1657993 -225866585 - MIR SINE MIR -5 257 180 1322 206 16 38 chr3 1658037 1658352 -225866226 + AluJo SINE Alu 3 310 -2 514 296 22 22 chr3 1658657 1658836 -225865742 - MLT1J LTR MaLR -325 186 8 198 325 98 32 chr3 1658854 1658977 -225865601 - MIR SINE MIR -115 147 17 24 0 0 0 chr3 1659468 1659492 -225865086 + AT_rich Low_complexity Low_complexity 1 24 0 217 117 83 0 chr3 1659921 1659981 -225864597 + (TA)n Simple_repeat Simple_repeat 1 65 0 333 296 110 76 chr3 1660550 1660790 -225863788 - HAL1 LINE L1 -556 1951 1692 904 223 0 0 chr3 1660790 1660965 -225863613 - FAM SINE Alu 0 175 1 333 296 110 76 chr3 1660965 1661106 -225863472 - HAL1 LINE L1 -815 1692 1557 401 315 123 30 chr3 1661113 1661348 -225863230 - HAL1 LINE L1 -1090 1417 1161 1127 235 39 78 chr3 1661771 1662183 -225862395 - MSTD LTR MaLR 0 396 1 1848 152 3 7 chr3 1662480 1662769 -225861809 - AluSx SINE Alu -14 298 11 233 292 0 0 chr3 1662904 1662976 -225861602 + MER116 DNA Mariner 6 77 -3 222 37 0 0 chr3 1714455 1714482 -225810096 + (CA)n Simple_repeat Simple_repeat 2 28 0 230 162 0 0 chr3 1714853 1714890 -225809688 - MLT2C2 LTR ERVL -2 462 426 926 208 63 0 chr3 1714927 1715134 -225809444 - MLT2B1 LTR ERVL -300 220 1 21 36 0 0 chr3 1716013 1716041 -225808537 + AT_rich Low_complexity Low_complexity 1 28 0 1763 205 3 6 chr3 1716143 1716504 -225808074 - MER46B DNA MER2_type -1 235 1 21 57 0 0 chr3 1717813 1717848 -225806730 + AT_rich Low_complexity Low_complexity 1 35 0 672 252 26 52 chr3 1718832 1719062 -225805516 + MIR SINE MIR 13 236 -26 572 328 58 17 chr3 1719235 1719476 -225805102 - MIR SINE MIR 0 262 12 1718 237 92 13 chr3 1719485 1720020 -225804558 + MER119 DNA MER1_type 7 583 0 2256 204 60 30 chr3 1720160 1720698 -225803880 - MLT2B3 LTR ERVL 0 554 1 251 325 36 0 chr3 1720920 1721003 -225803575 - L2 LINE L2 -3 3269 3184 197 319 132 42 chr3 1722386 1722530 -225802048 - L2 LINE L2 0 3272 3116 313 321 142 37 chr3 1722792 1722954 -225801624 + HAL1 LINE L1 228 406 -2101 1996 123 0 14 chr3 1723402 1723714 -225800864 + AluSg SINE Alu 1 308 0 427 265 128 95 chr3 1723972 1724633 -225799945 + HAL1 LINE L1 1612 2310 -197 2075 128 0 19 chr3 1724633 1724945 -225799633 - AluSx SINE Alu -6 306 1 427 265 128 95 chr3 1724945 1725147 -225799431 + HAL1 LINE L1 2310 2504 -3 303 244 74 67 chr3 1725355 1725490 -225799088 + MIR SINE MIR 11 146 -116 601 331 79 64 chr3 1725593 1725986 -225798592 + LTR16C LTR ERVL 89 487 -4 192 111 0 0 chr3 1726789 1726825 -225797753 + (A)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 1727254 1727285 -225797293 + (TG)n Simple_repeat Simple_repeat 1 31 0 2652 245 126 13 chr3 1727657 1728825 -225795753 - L1ME2 LINE L1 -9 6155 4854 757 301 33 5 chr3 1729827 1730040 -225794538 + MIR SINE MIR 2 220 -42 21 0 0 0 chr3 1730097 1730118 -225794460 + AT_rich Low_complexity Low_complexity 1 21 0 378 159 35 7 chr3 1730189 1730334 -225794244 + GA-rich Low_complexity Low_complexity 1 149 0 2589 216 31 19 chr3 1730369 1730984 -225793594 - L1MB5 LINE L1 -8 6166 5545 * 2812 246 29 67 chr3 1730951 1732009 -225792569 - L1MB5 LINE L1 -1367 4779 3762 766 236 34 39 chr3 1732009 1732217 -225792361 + MER20 DNA MER1_type 13 219 0 1070 146 5 21 chr3 1732431 1732623 -225791955 + L1PB2 LINE L1 5956 6144 -7 242 298 0 0 chr3 1732873 1732930 -225791648 + L2 LINE L2 3230 3286 -27 22 35 0 0 chr3 1734221 1734250 -225790328 + AT_rich Low_complexity Low_complexity 1 29 0 375 267 74 93 chr3 1734349 1734619 -225789959 + L2 LINE L2 3043 3307 -6 261 220 57 14 chr3 1734899 1735040 -225789538 + (TA)n Simple_repeat Simple_repeat 2 148 0 1482 338 58 38 chr3 1736573 1737773 -225786805 + HERV16 LTR ERVL 1799 3021 -1975 897 328 77 32 chr3 1737898 1738572 -225786006 + HERV16 LTR ERVL 3735 4457 -1028 266 125 21 0 chr3 1738580 1738628 -225785950 + (TG)n Simple_repeat Simple_repeat 2 50 0 603 145 8 63 chr3 1738630 1739135 -225785443 + (TATATG)n Simple_repeat Simple_repeat 1 477 0 225 284 47 101 chr3 1740549 1740697 -225783881 + LTR16C LTR ERVL 352 491 0 310 277 0 80 chr3 1740722 1740859 -225783719 - MLT1H LTR MaLR 0 549 424 680 271 81 44 chr3 1740893 1741188 -225783390 - MLT1H LTR MaLR -243 306 1 327 288 220 11 chr3 1742525 1742716 -225781862 + MIR SINE MIR 13 243 -19 311 238 0 0 chr3 1743057 1743120 -225781458 - MER69 DNA AcHobo 0 2526 2464 252 0 0 0 chr3 1743262 1743290 -225781288 + (A)n Simple_repeat Simple_repeat 1 28 0 267 79 0 0 chr3 1743770 1743808 -225780770 + (TG)n Simple_repeat Simple_repeat 2 39 0 568 310 44 31 chr3 1743993 1744222 -225780356 + MIR SINE MIR 29 260 -2 1586 237 70 57 chr3 1744470 1745073 -225779505 - L1ME2 LINE L1 -5 6161 5567 203 0 0 36 chr3 1745073 1745101 -225779477 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1484 201 3 3 chr3 1745111 1745395 -225779183 - AluJb SINE Alu -26 286 3 1586 237 70 57 chr3 1745395 1745760 -225778818 - L1ME2 LINE L1 -607 5559 5031 1915 76 29 11 chr3 1745760 1746036 -225778542 - L1PA11 LINE L1 0 6174 5894 1586 237 70 57 chr3 1746036 1746225 -225778353 - L1ME2 LINE L1 -1135 5031 4846 995 293 66 7 chr3 1746256 1746679 -225777899 - L1ME2 LINE L1 -1259 4887 4440 1956 327 64 1 chr3 1746707 1747454 -225777124 - L2 LINE L2 -1190 2124 1331 21 36 0 0 chr3 1747556 1747584 -225776994 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 1747606 1747630 -225776948 + AT_rich Low_complexity Low_complexity 1 24 0 185 170 21 43 chr3 1750483 1750530 -225774048 - MER5C DNA MER1_type 0 324 279 29 28 0 0 chr3 1751010 1751046 -225773532 + AT_rich Low_complexity Low_complexity 1 36 0 2128 90 0 4 chr3 1751113 1751421 -225773157 + AluSc SINE Alu 1 307 0 826 285 92 64 chr3 1751422 1752177 -225772401 - HAL1b LINE L1 -234 1114 323 210 91 0 0 chr3 1752177 1752210 -225772368 + (TG)n Simple_repeat Simple_repeat 2 34 0 826 285 92 64 chr3 1752210 1752429 -225772149 - HAL1b LINE L1 -1025 323 112 183 129 0 0 chr3 1753297 1753328 -225771250 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 635 331 20 36 chr3 1753463 1753711 -225770867 + MIR SINE MIR 16 259 -3 1269 27 0 0 chr3 1754018 1754167 -225770411 + L1PA3 LINE L1 6002 6150 -5 23 0 0 0 chr3 1754167 1754190 -225770388 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr3 1754681 1754715 -225769863 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 1754714 1754743 -225769835 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 28 0 0 0 chr3 1754975 1755003 -225769575 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 1755095 1755381 -225769197 + AluY SINE Alu 2 287 -24 28 0 0 0 chr3 1755381 1755409 -225769169 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 1755963 1755991 -225768587 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 1756083 1756369 -225768209 + AluY SINE Alu 2 287 -24 28 0 0 0 chr3 1756369 1756397 -225768181 + AT_rich Low_complexity Low_complexity 1 28 0 254 228 60 75 chr3 1757316 1757540 -225767038 - L1MEd LINE L1 -4894 1225 1125 25 75 0 0 chr3 1757624 1757677 -225766901 + AT_rich Low_complexity Low_complexity 1 53 0 234 350 46 53 chr3 1757801 1758084 -225766494 - L1MEd LINE L1 -5343 776 496 2257 48 7 0 chr3 1759364 1759656 -225764922 + AluY SINE Alu 2 295 -16 2343 59 3 0 chr3 1759740 1760043 -225764535 + AluY SINE Alu 1 304 -7 1305 62 6 0 chr3 1760166 1760342 -225764236 + AluY SINE Alu 132 308 -3 22 56 0 0 chr3 1761180 1761216 -225763362 + AT_rich Low_complexity Low_complexity 1 36 0 404 371 9 0 chr3 1761222 1761338 -225763240 - L2 LINE L2 -8 3305 3189 226 209 15 15 chr3 1761834 1761901 -225762677 - L1ME4a LINE L1 -3 6118 6052 723 298 88 51 chr3 1761929 1762573 -225762005 - L1ME4a LINE L1 -139 5982 5315 208 338 27 0 chr3 1762959 1763033 -225761545 + L2 LINE L2 3194 3269 -3 2180 274 49 53 chr3 1763657 1764852 -225759726 + HAL1 LINE L1 1169 2359 -148 25 0 0 0 chr3 1764954 1764979 -225759599 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 1766044 1766072 -225758506 + AT_rich Low_complexity Low_complexity 1 28 0 248 319 11 32 chr3 1767528 1767622 -225756956 - MLT1K LTR MaLR -15 573 482 279 340 21 0 chr3 1768124 1768218 -225756360 + MIR SINE MIR 45 140 -68 349 303 328 5 chr3 1768331 1768526 -225756052 + MIR SINE MIR 2 259 -3 1482 163 0 105 chr3 1769007 1769339 -225755239 - AluJb SINE Alu -15 297 1 219 36 0 0 chr3 1769505 1769533 -225755045 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 193 324 6 6 chr3 1769747 1769836 -225754742 - MIR SINE MIR -100 108 19 21 57 0 0 chr3 1771787 1771822 -225752756 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 1772101 1772122 -225752456 + AT_rich Low_complexity Low_complexity 1 21 0 28695 121 76 9 chr3 1773765 1779523 -225745055 - L1PA7 LINE L1 -2 6152 12 218 105 26 0 chr3 1780137 1780175 -225744403 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 283 264 72 64 chr3 1780307 1780432 -225744146 - MLT1K LTR MaLR -181 407 282 28 61 0 0 chr3 1781208 1781257 -225743321 + AT_rich Low_complexity Low_complexity 1 49 0 1528 211 13 3 chr3 1781449 1781753 -225742825 - 7SLRNA srpRNA srpRNA -13 307 1 299 332 45 10 chr3 1781760 1781962 -225742616 - L1MC4a LINE L1 -1923 5885 5677 6178 95 9 3 chr3 1782063 1783693 -225740885 + L1PA13 LINE L1 4516 6162 -1 246 278 133 0 chr3 1783813 1783903 -225740675 + MIR SINE MIR 110 211 -51 384 181 123 48 chr3 1785452 1785613 -225738965 + MER20 DNA MER1_type 2 219 0 29 28 0 0 chr3 1786181 1786217 -225738361 + AT_rich Low_complexity Low_complexity 1 36 0 387 0 0 0 chr3 1787194 1787237 -225737341 + (T)n Simple_repeat Simple_repeat 1 43 0 282 267 76 29 chr3 1787297 1787402 -225737176 + MIR SINE MIR 79 188 -74 24 0 0 0 chr3 1787677 1787701 -225736877 + AT_rich Low_complexity Low_complexity 1 24 0 1686 219 115 22 chr3 1787811 1788273 -225736305 + MLT1D LTR MaLR 1 505 0 2267 74 0 7 chr3 1788419 1788737 -225735841 - AluY SINE Alu 0 316 1 282 116 0 0 chr3 1790453 1790496 -225734082 + (TA)n Simple_repeat Simple_repeat 2 44 0 299 281 114 9 chr3 1790623 1790737 -225733841 - L2 LINE L2 0 3272 3147 600 260 201 43 chr3 1791344 1791736 -225732842 + LTR16A1 LTR ERVL 1 454 -3 291 292 28 0 chr3 1791741 1791813 -225732765 + L2 LINE L2 3196 3269 -3 22 35 0 0 chr3 1792109 1792138 -225732440 + AT_rich Low_complexity Low_complexity 1 29 0 210 143 0 0 chr3 1792968 1793003 -225731575 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 995 205 71 26 chr3 1793577 1793845 -225730733 + MER21B LTR ERV1 470 749 -114 401 300 202 5 chr3 1794256 1794623 -225729955 + HAL1 LINE L1 1373 1811 -696 24 32 0 0 chr3 1796759 1796790 -225727788 + AT_rich Low_complexity Low_complexity 1 31 0 196 333 0 13 chr3 1797435 1797510 -225727068 - MIR SINE MIR -21 241 168 181 323 15 0 chr3 1798164 1798229 -225726349 + L2 LINE L2 2171 2236 -1078 1915 139 4 0 chr3 1798234 1798507 -225726071 - MER1A DNA MER1_type -194 335 62 190 371 14 0 chr3 1798544 1798614 -225725964 + L2 LINE L2 2302 2372 -942 300 310 41 16 chr3 1799336 1799538 -225725040 - MLT1J LTR MaLR -1 510 241 310 252 126 17 chr3 1799658 1799777 -225724801 - MLT1J LTR MaLR -371 140 9 2188 132 0 3 chr3 1799953 1800264 -225724314 - AluSx SINE Alu 0 312 3 255 200 0 0 chr3 1800309 1800354 -225724224 - MIR SINE MIR -121 141 97 332 302 75 0 chr3 1800356 1800462 -225724116 + L3 LINE CR1 1463 1576 -1 369 336 69 18 chr3 1801348 1801492 -225723086 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 1801492 1801512 -225723066 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 1801512 1801584 -225722994 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 1801611 1801666 -225722912 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 1802026 1802248 -225722330 - MIR SINE MIR -40 222 9 21 43 0 0 chr3 1802823 1802846 -225721732 + AT_rich Low_complexity Low_complexity 1 23 0 2300 106 0 0 chr3 1803065 1803368 -225721210 - AluSx SINE Alu -7 305 3 974 258 57 8 chr3 1803409 1803657 -225720921 - MLT1E3 LTR MaLR -194 430 171 403 276 118 0 chr3 1803685 1803812 -225720766 - MLT1E3 LTR MaLR -505 149 8 2076 128 0 0 chr3 1804070 1804368 -225720210 - AluSg SINE Alu -12 298 1 1759 224 47 63 chr3 1805761 1806637 -225717941 - L1MCb LINE L1 -4852 844 333 679 266 5 18 chr3 1806636 1806854 -225717724 - L1MCb LINE L1 -5467 929 715 * 429 321 32 43 chr3 1807080 1807357 -225717221 - L1MCb LINE L1 -6031 365 92 281 297 31 78 chr3 1807369 1807497 -225717081 - MIR SINE MIR -124 138 17 322 311 87 6 chr3 1807579 1807740 -225716838 + L1ME4a LINE L1 5946 6119 -2 2005 114 20 7 chr3 1807745 1808043 -225716535 + AluSg SINE Alu 1 302 -8 8680 119 33 23 chr3 1808869 1810417 -225714161 - HERVH LTR ERV1 -5541 2172 460 481 99 0 0 chr3 1810397 1810468 -225714110 - HERVH LTR ERV1 -7642 71 1 * 1972 111 57 104 chr3 1810470 1810940 -225713638 - LTR7 LTR ERV1 -2 448 1 3162 95 32 2 chr3 1810940 1811043 -225713535 + L1PB1 LINE L1 5677 5775 -376 940 79 14 0 chr3 1811043 1811182 -225713396 + (TA)n Simple_repeat Simple_repeat 2 142 0 3162 95 32 2 chr3 1811182 1811539 -225713039 + L1PB1 LINE L1 5775 6151 0 1438 111 65 0 chr3 1811665 1811881 -225712697 + MER30 DNA MER1_type 1 230 0 1586 261 89 46 chr3 1811916 1812747 -225711831 - L1ME3A LINE L1 -16 6154 5288 283 296 70 12 chr3 1812794 1812966 -225711612 - L1ME3A LINE L1 -926 5220 5039 186 43 0 0 chr3 1813010 1813033 -225711545 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 420 262 40 24 chr3 1814279 1814405 -225710173 - MIR SINE MIR -74 188 61 1932 119 0 0 chr3 1814405 1814665 -225709913 + AluSq SINE Alu 21 280 -33 363 89 0 0 chr3 1814665 1814721 -225709857 + AluSp/q SINE Alu 245 300 -3 185 349 32 16 chr3 1814721 1814784 -225709794 - MIR SINE MIR -186 76 13 554 229 179 0 chr3 1814789 1814929 -225709649 - MER5A DNA MER1_type -1 188 24 210 190 177 76 chr3 1815125 1815204 -225709374 - L2 LINE L2 0 3313 3227 199 54 54 36 chr3 1815763 1815819 -225708759 + T-rich Low_complexity Low_complexity 6 62 0 23 0 0 0 chr3 1815961 1815984 -225708594 + AT_rich Low_complexity Low_complexity 1 23 0 258 237 51 17 chr3 1816029 1816088 -225708490 - MIR SINE MIR -161 101 41 1860 331 77 36 chr3 1816304 1817508 -225707070 + L2 LINE L2 11 1264 -2050 300 267 83 25 chr3 1818203 1818323 -225706255 - L1ME4a LINE L1 -48 6073 5947 1379 176 114 29 chr3 1819418 1819691 -225704887 - MER1B DNA MER1_type -43 296 1 21 36 0 0 chr3 1819855 1819883 -225704695 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 1819901 1819937 -225704641 + AT_rich Low_complexity Low_complexity 1 36 0 277 244 100 91 chr3 1820014 1820244 -225704334 - L1ME3A LINE L1 -154 6016 5785 299 333 37 9 chr3 1820357 1820465 -225704113 - L2 LINE L2 -20 3252 3142 986 262 136 40 chr3 1820699 1821149 -225703429 - MLT1H LTR MaLR -54 495 3 252 86 0 0 chr3 1821249 1821284 -225703294 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 865 195 6 18 chr3 1821507 1821676 -225702902 - FRAM SINE Alu -14 162 1 188 33 0 33 chr3 1821676 1821706 -225702872 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1491 213 0 11 chr3 1821711 1821997 -225702581 - AluJb SINE Alu -24 288 6 712 319 168 17 chr3 1822069 1822545 -225702033 - L2 LINE L2 -665 2649 2102 319 345 84 20 chr3 1822562 1823052 -225701526 - L1ME4a LINE L1 -297 5824 5304 746 216 155 0 chr3 1824727 1824921 -225699657 - MER58A DNA MER1_type 0 224 1 389 263 192 27 chr3 1824957 1825181 -225699397 - MIR SINE MIR 0 262 2 317 279 91 71 chr3 1825436 1825634 -225698944 + MIR SINE MIR 19 212 -50 202 182 0 0 chr3 1825684 1825717 -225698861 + (CA)n Simple_repeat Simple_repeat 2 34 0 206 336 173 0 chr3 1825839 1825943 -225698635 - L3b LINE CR1 -27 1556 1435 2605 103 16 0 chr3 1826418 1826787 -225697791 + THE1C LTR MaLR 1 375 0 313 286 24 0 chr3 1826928 1827012 -225697566 + L2 LINE L2 3222 3307 -6 508 361 47 29 chr3 1827043 1827384 -225697194 - LTR16C LTR ERVL -8 483 137 291 291 60 46 chr3 1828491 1828642 -225695936 + MIR SINE MIR 5 157 -105 229 218 11 35 chr3 1828704 1828791 -225695787 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 384 308 63 6 chr3 1829198 1829357 -225695221 - MLT1F LTR MaLR -374 168 1 438 335 182 23 chr3 1829507 1829946 -225694632 - L2 LINE L2 -1 3312 2804 235 182 55 0 chr3 1830004 1830059 -225694519 - L2 LINE L2 -6 3307 3250 22 0 0 0 chr3 1830382 1830404 -225694174 + AT_rich Low_complexity Low_complexity 1 22 0 3518 142 39 29 chr3 1830404 1831092 -225693486 - L1MA7 LINE L1 0 6291 5597 324 283 75 12 chr3 1831655 1831828 -225692750 + MER113 DNA MER1_type? 34 217 -304 679 132 294 0 chr3 1832779 1832915 -225691663 - AluSc SINE Alu -7 302 127 291 301 0 32 chr3 1833178 1833271 -225691307 + MIR SINE MIR 78 167 -95 25 0 0 0 chr3 1833528 1833553 -225691025 + AT_rich Low_complexity Low_complexity 1 25 0 2532 64 0 0 chr3 1834153 1834451 -225690127 + AluY SINE Alu 1 298 -13 1038 163 0 37 chr3 1834651 1834841 -225689737 + FRAM SINE Alu 1 175 -1 544 305 58 36 chr3 1834912 1835135 -225689443 - MIR SINE MIR -27 235 8 197 286 0 0 chr3 1836656 1836705 -225687873 + MIR SINE MIR 2 50 -212 1396 167 116 25 chr3 1836728 1837004 -225687574 - AluSx SINE Alu -6 306 6 2433 135 3 3 chr3 1837727 1838090 -225686488 + THE1B LTR MaLR 2 364 0 231 239 149 30 chr3 1838157 1838224 -225686354 + MIR SINE MIR 112 186 -76 23 33 0 0 chr3 1839985 1840015 -225684563 + AT_rich Low_complexity Low_complexity 1 30 0 193 333 0 13 chr3 1840660 1840735 -225683843 - MIR SINE MIR -21 241 168 197 297 247 18 chr3 1840915 1841296 -225683282 + L2 LINE L2 1528 1995 -1319 180 323 15 0 chr3 1841389 1841454 -225683124 + L2 LINE L2 2171 2236 -1078 1793 143 4 0 chr3 1841459 1841732 -225682846 - MER1A DNA MER1_type -194 335 62 186 371 14 0 chr3 1841769 1841839 -225682739 + L2 LINE L2 2302 2372 -942 255 315 33 10 chr3 1842589 1842763 -225681815 - MLT1J1 LTR MaLR -30 481 241 268 252 126 17 chr3 1842883 1843002 -225681576 - MLT1J LTR MaLR -371 140 9 2161 139 0 3 chr3 1843172 1843481 -225681097 - AluSx SINE Alu -2 310 3 252 200 0 0 chr3 1843526 1843571 -225681007 - MIR SINE MIR -121 141 97 327 302 75 0 chr3 1843573 1843679 -225680899 + L3 LINE CR1 1463 1576 -1 367 336 69 18 chr3 1844565 1844709 -225679869 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 1844709 1844729 -225679849 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 367 336 69 18 chr3 1844729 1844801 -225679777 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 1844828 1844883 -225679695 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 1845247 1845469 -225679109 - MIR SINE MIR -40 222 9 23 0 0 0 chr3 1846044 1846067 -225678511 + AT_rich Low_complexity Low_complexity 1 23 0 2369 107 0 0 chr3 1846286 1846596 -225677982 - AluSx SINE Alu -2 310 1 872 263 38 8 chr3 1846647 1846883 -225677695 - MLT1E3 LTR MaLR -211 413 171 361 276 118 0 chr3 1846911 1847038 -225677540 - MLT1E3 LTR MaLR -505 149 8 1805 118 92 0 chr3 1847296 1847568 -225677010 - AluSg SINE Alu -12 298 2 243 0 0 0 chr3 1847815 1847842 -225676736 + (CA)n Simple_repeat Simple_repeat 2 28 0 1747 124 70 4 chr3 1848813 1849086 -225675492 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 1849094 1849122 -225675456 + AT_rich Low_complexity Low_complexity 1 28 0 2206 96 3 0 chr3 1849549 1849864 -225674714 + AluSq SINE Alu 1 313 0 1870 299 120 15 chr3 1850363 1851366 -225673212 - L2 LINE L2 -4 3309 2185 195 318 0 0 chr3 1851365 1851428 -225673150 - MIR SINE MIR -16 246 184 * 3250 86 8 72 chr3 1852014 1852029 -225672549 + L1M1 LINE L1 3535 3549 -4016 3096 57 0 86 chr3 1852029 1852507 -225672071 - L1PA7 LINE L1 0 6154 5718 3250 86 8 72 chr3 1852507 1853065 -225671513 + L1M1 LINE L1 3549 4073 -3492 726 260 29 6 chr3 1853068 1853241 -225671337 - MER20 DNA MER1_type -42 177 1 2046 169 57 33 chr3 1853400 1853856 -225670722 + MER41B LTR ERV1 113 579 -56 262 198 0 99 chr3 1853833 1853914 -225670664 + MER66A LTR ERV1 395 467 -11 * 2388 68 0 10 chr3 1855494 1855804 -225668774 - AluY SINE Alu -3 308 2 822 259 0 0 chr3 1855822 1856011 -225668567 + MER5A DNA MER1_type 1 189 0 692 134 0 0 chr3 1856346 1856458 -225668120 - MER41A LTR ERV1 0 554 443 993 74 0 15 chr3 1856564 1856699 -225667879 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr3 1857136 1857164 -225667414 + AT_rich Low_complexity Low_complexity 1 28 0 1747 124 70 4 chr3 1857172 1857445 -225667133 + AluSx SINE Alu 1 291 -21 1478 95 7 62 chr3 1858176 1858481 -225666097 - AluY SINE Alu -23 288 1 3215 126 35 14 chr3 1858481 1859507 -225665071 - L1PBa LINE L1 -5031 1832 636 980 159 20 0 chr3 1859509 1859704 -225664874 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 1859807 1859844 -225664734 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 1861061 1861083 -225663495 + AT_rich Low_complexity Low_complexity 1 22 0 278 340 60 0 chr3 1861108 1861208 -225663370 + MIR SINE MIR 57 162 -100 2219 124 0 3 chr3 1861521 1861828 -225662750 - AluSx SINE Alu -6 306 1 340 272 99 74 chr3 1862155 1862438 -225662140 + L1ME4a LINE L1 5611 5900 -221 247 130 0 0 chr3 1862725 1862771 -225661807 + MER45C DNA AcHobo 95 140 -813 4362 206 105 36 chr3 1862915 1864187 -225660391 + MER45R DNA AcHobo 222 1580 -1 236 356 22 11 chr3 1864640 1864730 -225659848 + L2 LINE L2 3223 3313 0 235 238 138 0 chr3 1865385 1865465 -225659113 - L1MC5 LINE L1 -397 7564 7474 360 42 0 0 chr3 1865483 1865531 -225659047 - L1PA3 LINE L1 -3 6152 6105 1120 47 0 0 chr3 1865531 1865679 -225658899 + L1PA4 LINE L1 5930 6077 -78 2017 149 10 0 chr3 1865814 1866122 -225658456 + AluSx SINE Alu 1 311 -1 31 82 0 0 chr3 1869035 1869108 -225655470 + AT_rich Low_complexity Low_complexity 1 73 0 270 306 189 0 chr3 1870198 1870309 -225654269 - MIR SINE MIR -57 151 20 181 333 30 20 chr3 1870335 1870434 -225654144 + MER5A DNA MER1_type 34 133 -56 226 273 0 0 chr3 1873752 1873807 -225650771 + L2 LINE L2 3254 3308 -5 263 344 164 0 chr3 1873865 1873987 -225650591 - MIR SINE MIR -14 248 107 282 239 182 115 chr3 1874479 1874633 -225649945 + MER58A DNA MER1_type 1 174 -2246 1120 129 31 26 chr3 1874633 1874827 -225649751 + L1PA16 LINE L1 5962 6156 -10 282 239 182 115 chr3 1874827 1874881 -225649697 + MER58A DNA MER1_type 174 223 -1 640 272 28 14 chr3 1875832 1876049 -225648529 - MER58A DNA MER1_type -3 221 2 22 0 0 0 chr3 1877341 1877363 -225647215 + AT_rich Low_complexity Low_complexity 1 22 0 2016 181 17 67 chr3 1878791 1879267 -225645311 - MER66A LTR ERV1 0 478 27 665 152 29 14 chr3 1879339 1879477 -225645101 + L1MB1 LINE L1 6023 6162 -6 316 316 0 50 chr3 1879866 1880005 -225644573 + L1MC4 LINE L1 6571 6702 -1340 * 338 310 20 0 chr3 1879984 1880084 -225644494 - L1MC4 LINE L1 -1339 6703 6602 334 291 122 35 chr3 1881276 1881506 -225643072 + MIR SINE MIR 1 250 -12 38553 34 30 2 chr3 1882806 1888817 -225635761 + L1PA2 LINE L1 1 6155 0 23 0 0 0 chr3 1889155 1889178 -225635400 + AT_rich Low_complexity Low_complexity 1 23 0 1759 203 30 86 chr3 1890483 1891006 -225633572 - MLT1D LTR MaLR -8 618 1 310 259 99 15 chr3 1891014 1891145 -225633433 - MIR SINE MIR -15 247 106 392 287 64 35 chr3 1891650 1891869 -225632709 + MIR SINE MIR 20 245 -17 270 339 68 41 chr3 1892331 1892552 -225632026 - L2 LINE L2 -2 3311 3085 189 277 21 0 chr3 1892617 1892664 -225631914 - L2 LINE L2 -342 2972 2925 406 289 87 0 chr3 1894974 1895078 -225629500 - L2 LINE L2 -2 3270 3158 216 350 82 0 chr3 1895571 1895668 -225628910 + MIR3 SINE MIR 56 160 -48 186 304 10 69 chr3 1898209 1898311 -225626267 - MIR3 SINE MIR -39 169 74 238 333 24 0 chr3 1899070 1899154 -225625424 - MER81 DNA DNA -22 92 7 326 297 84 19 chr3 1899216 1899371 -225625207 + MIR SINE MIR 24 188 -74 1313 258 58 8 chr3 1900126 1900502 -225624076 + LTR16C LTR ERVL 97 491 0 624 217 0 0 chr3 1902209 1902324 -225622254 + AluJo SINE Alu 1 115 -187 626 188 0 0 chr3 1902324 1902459 -225622119 + AluJo SINE Alu 184 318 0 729 316 25 8 chr3 1903119 1903356 -225621222 - MIR SINE MIR 0 262 22 184 379 11 0 chr3 1903847 1903934 -225620644 + MIR SINE MIR 20 107 -155 304 0 87 0 chr3 1904436 1904482 -225620096 + T-rich Low_complexity Low_complexity 2 51 0 238 164 16 16 chr3 1905343 1905404 -225619174 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 2114 105 3 3 chr3 1905476 1905762 -225618816 + AluSx SINE Alu 1 286 -26 198 307 92 43 chr3 1905965 1906126 -225618452 - MIR SINE MIR -68 140 2 375 277 44 25 chr3 1906176 1906335 -225618243 - MER103 DNA DNA 0 166 5 580 291 20 35 chr3 1906527 1906726 -225617852 + MIR SINE MIR 10 205 -57 386 259 32 138 chr3 1906930 1907177 -225617401 - MER102b DNA MER1_type -18 323 103 257 360 93 0 chr3 1907252 1907391 -225617187 - L3 LINE CR1 -1 1576 1425 491 297 24 38 chr3 1907407 1907616 -225616962 - MIR SINE MIR -53 209 4 * 1761 281 8 58 chr3 1907616 1908251 -225616327 - L3 LINE CR1 -180 1397 795 226 210 32 0 chr3 1908582 1908644 -225615934 + (TA)n Simple_repeat Simple_repeat 1 64 0 504 267 72 59 chr3 1908802 1909023 -225615555 + MER58A DNA MER1_type 1 224 0 946 251 127 0 chr3 1909077 1909344 -225615234 + MER110 LTR ERV1 46 346 -145 2566 149 9 41 chr3 1909351 1909794 -225614784 - MER57B LTR ERV1 -5 429 1 421 300 15 0 chr3 1909808 1909938 -225614640 + MER110 LTR ERV1 360 491 0 332 321 9 0 chr3 1910230 1910342 -225614236 + MIR3 SINE MIR 95 207 -1 1057 220 5 5 chr3 1912375 1912575 -225612003 - MER58A DNA MER1_type -24 200 1 249 209 0 95 chr3 1912659 1912764 -225611814 + L1MC4 LINE L1 6609 6703 -1339 288 249 44 88 chr3 1912799 1913004 -225611574 - MER46C DNA MER2_type -142 196 1 489 325 5 26 chr3 1913610 1913804 -225610774 - MIR3 SINE MIR 0 208 19 2023 141 3 6 chr3 1914062 1914374 -225610204 + AluSq SINE Alu 3 313 0 1246 314 38 7 chr3 1914519 1914940 -225609638 - MER74C LTR ERVL -17 443 10 292 380 29 37 chr3 1915003 1915248 -225609330 - MLT1K LTR MaLR -306 282 40 283 298 58 8 chr3 1915295 1915416 -225609162 + MER94 DNA DNA 8 134 0 199 346 71 50 chr3 1915586 1915768 -225608810 - L2 LINE L2 -501 2813 2628 * 334 377 117 20 chr3 1915761 1916162 -225608416 + L2 LINE L2 2536 2975 -339 236 222 0 16 chr3 1916497 1916560 -225608018 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 25 0 0 0 chr3 1916842 1916867 -225607711 + AT_rich Low_complexity Low_complexity 1 25 0 282 287 30 20 chr3 1916993 1917094 -225607484 - MLT1H LTR MaLR -447 102 1 25 31 0 0 chr3 1917588 1917620 -225606958 + AT_rich Low_complexity Low_complexity 1 32 0 29 84 0 0 chr3 1918082 1918153 -225606425 + AT_rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr3 1918201 1918224 -225606354 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 1918332 1918360 -225606218 + AT_rich Low_complexity Low_complexity 1 28 0 1006 289 86 42 chr3 1918410 1918936 -225605642 - MLT1H LTR MaLR 0 549 1 1662 220 77 46 chr3 1920460 1920942 -225603636 + MLT1D LTR MaLR 3 499 -6 271 234 404 0 chr3 1920948 1921042 -225603536 + L2 LINE L2 3141 3272 0 264 242 200 11 chr3 1921243 1921338 -225603240 + L2 LINE L2 3200 3312 -1 261 277 69 54 chr3 1921348 1921478 -225603100 - L2 LINE L2 -1 3271 3140 1943 134 3 3 chr3 1921877 1922203 -225602375 - AluSx SINE Alu 0 328 3 24 0 0 0 chr3 1922208 1922232 -225602346 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr3 1922475 1922512 -225602066 + AT_rich Low_complexity Low_complexity 1 37 0 2350 96 3 0 chr3 1924197 1924509 -225600069 - AluSp SINE Alu 0 313 1 825 330 38 33 chr3 1924559 1925098 -225599480 + L2 LINE L2 2772 3311 -2 23 0 0 0 chr3 1925246 1925269 -225599309 + AT_rich Low_complexity Low_complexity 1 23 0 1682 170 26 13 chr3 1926358 1926782 -225597796 - AluJo SINE Alu 0 428 1 6715 105 13 35 chr3 1926803 1926959 -225597619 - L1MA2 LINE L1 0 6304 6146 392 36 0 18 chr3 1926959 1927014 -225597564 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1946 127 4 0 chr3 1927016 1927283 -225597295 - AluSx SINE Alu -44 268 1 6715 105 13 35 chr3 1927283 1928317 -225596261 - L1MA2 LINE L1 -159 6145 5137 813 217 0 30 chr3 1928344 1928510 -225596068 - FRAM SINE Alu -22 154 1 281 188 0 0 chr3 1928516 1928580 -225595998 + L1MC4 LINE L1 6640 6703 -1339 322 218 33 0 chr3 1928610 1928701 -225595877 - L1MC4 LINE L1 -1339 6983 1996 198 209 0 0 chr3 1928704 1928747 -225595831 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 296 250 181 0 chr3 1928747 1928819 -225595759 - FLAM_A SINE Alu -16 117 33 412 264 0 0 chr3 1928952 1929039 -225595539 - Tigger7 DNA MER2_type -12 2575 2489 * 1234 160 20 116 chr3 1929037 1929331 -225595247 - Tigger7 DNA MER2_type -2220 267 2 24 77 0 0 chr3 1929370 1929422 -225595156 + AT_rich Low_complexity Low_complexity 1 52 0 444 237 21 0 chr3 1929465 1929562 -225595016 - MER5B DNA MER1_type -3 175 77 2150 115 0 0 chr3 1929606 1929885 -225594693 - AluSg SINE Alu -31 279 1 1073 242 81 36 chr3 1929895 1930111 -225594467 - L1ME3A LINE L1 0 6170 5965 216 0 0 0 chr3 1930111 1930135 -225594443 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 1930135 1930336 -225594242 - L1ME3A LINE L1 -205 5965 5734 194 258 91 45 chr3 1930341 1930407 -225594171 + MER5B DNA MER1_type 108 176 -2 22 35 0 0 chr3 1930428 1930457 -225594121 + AT_rich Low_complexity Low_complexity 1 29 0 1647 198 68 3 chr3 1930561 1930929 -225593649 - MER63D DNA MER1_type -4 1056 665 658 201 201 73 chr3 1930948 1931015 -225593563 - MER63D DNA MER1_type -628 433 376 212 0 0 35 chr3 1931015 1931044 -225593534 + (TA)n Simple_repeat Simple_repeat 1 28 0 658 201 201 73 chr3 1931044 1931319 -225593259 - MER63D DNA MER1_type -685 376 47 300 27 0 0 chr3 1931516 1931536 -225593042 + (CA)n Simple_repeat Simple_repeat 1 57 0 300 27 0 0 chr3 1931536 1931573 -225593005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1597 169 4 22 chr3 1933204 1933482 -225591096 - AluJo SINE Alu -38 274 2 735 288 113 14 chr3 1933747 1934265 -225590313 + MLT2E LTR ERVL 25 626 -2 414 321 81 43 chr3 1935375 1935584 -225588994 - MIR SINE MIR 0 262 46 291 290 43 73 chr3 1935994 1936133 -225588445 - MIR SINE MIR -28 180 45 2975 83 0 2 chr3 1936434 1936831 -225587747 + L1PA8 LINE L1 5777 6172 0 207 0 0 0 chr3 1936917 1936940 -225587638 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 217 221 118 0 chr3 1936944 1937012 -225587566 + MIR SINE MIR 47 122 -140 521 237 44 7 chr3 1937406 1937541 -225587037 - MIR SINE MIR -111 151 12 1976 134 16 3 chr3 1937667 1937974 -225586604 - AluSx SINE Alu -1 311 1 560 284 126 48 chr3 1937994 1938265 -225586313 - LTR16C LTR ERVL 0 491 200 300 254 24 79 chr3 1938375 1938501 -225586077 - MIR SINE MIR -99 163 45 206 310 43 70 chr3 1938785 1938972 -225585606 - L2 LINE L2 -407 2907 2726 2278 113 0 7 chr3 1939720 1940030 -225584548 + AluSx SINE Alu 2 309 -3 434 341 74 9 chr3 1940529 1940746 -225583832 + MIR SINE MIR 18 248 -14 634 209 130 6 chr3 1941197 1941374 -225583204 - MER20 DNA MER1_type -20 199 1 1728 176 3 0 chr3 1941384 1941673 -225582905 - AluJo SINE Alu -22 290 1 249 274 27 0 chr3 1942143 1942216 -225582362 - MIR SINE MIR -6 256 182 351 0 0 0 chr3 1942387 1942426 -225582152 + (TG)n Simple_repeat Simple_repeat 2 40 0 619 256 45 25 chr3 1943118 1943317 -225581261 - MIR SINE MIR -14 248 46 419 321 25 6 chr3 1943573 1943732 -225580846 + MIR3 SINE MIR 45 206 -2 229 257 86 29 chr3 1944468 1944538 -225580040 + L2 LINE L2 3232 3305 -8 249 316 89 0 chr3 1944540 1944619 -225579959 - L2 LINE L2 -37 3235 3150 1580 176 48 0 chr3 1944721 1945011 -225579567 + AluJb SINE Alu 1 304 -8 479 325 79 95 chr3 1945184 1945919 -225578659 - L2 LINE L2 -374 2940 2218 1685 118 33 0 chr3 1945940 1946185 -225578393 + AluSp SINE Alu 39 291 -22 667 276 98 33 chr3 1946588 1947188 -225577390 + L1MC4 LINE L1 7186 7681 -127 * 789 273 28 22 chr3 1947179 1947611 -225576967 - L1MCc LINE L1 -4463 2520 2138 2350 106 0 0 chr3 1947665 1947967 -225576611 - AluSx SINE Alu -10 302 1 1630 263 89 30 chr3 1948014 1948678 -225575900 - L1MCc LINE L1 -4894 1529 998 2120 184 26 26 chr3 1948678 1949102 -225575476 - MSTB LTR MaLR -2 424 1 1630 263 89 30 chr3 1949102 1949284 -225575294 - L1MCc LINE L1 -5425 998 828 388 266 132 60 chr3 1949534 1949898 -225574680 - L1MCc LINE L1 -6011 412 23 228 213 0 0 chr3 1949947 1950008 -225574570 + GA-rich Low_complexity Low_complexity 2 62 0 211 374 84 7 chr3 1950490 1950645 -225573933 + MIR SINE MIR 46 212 -50 26 30 0 0 chr3 1953131 1953164 -225571414 + AT_rich Low_complexity Low_complexity 1 33 0 1925 262 59 23 chr3 1953462 1954034 -225570544 - MLT1E LTR MaLR 0 593 1 27 29 0 0 chr3 1954666 1954700 -225569878 + AT_rich Low_complexity Low_complexity 1 34 0 236 366 0 0 chr3 1955163 1955245 -225569333 - Charlie1 DNA MER1_type -2679 82 1 196 231 0 19 chr3 1955360 1955412 -225569166 + MIR SINE MIR 180 230 -32 530 253 222 0 chr3 1955440 1955634 -225568944 + MIR SINE MIR 5 241 -21 394 267 298 0 chr3 1957421 1957552 -225567026 - MER45A DNA AcHobo -8 170 1 284 0 28 0 chr3 1958808 1958844 -225565734 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 382 237 21 0 chr3 1959461 1959554 -225565024 + MER117 DNA MER1_type 68 162 -35 273 373 55 39 chr3 1959602 1959721 -225564857 - MIR3 SINE MIR -53 155 31 1464 163 22 117 chr3 1959721 1960133 -225564445 - MLT1A2 LTR MaLR 0 374 2 273 373 55 39 chr3 1960133 1960165 -225564413 - MIR3 SINE MIR -177 31 1 320 235 20 71 chr3 1960818 1960916 -225563662 + MER21B LTR ERV1 12 104 -759 1900 250 120 56 chr3 1960917 1961665 -225562913 + MER21B LTR ERV1 20 815 -48 213 341 32 32 chr3 1962058 1962181 -225562397 + L2 LINE L2 2933 3055 -217 523 306 36 39 chr3 1963090 1963331 -225561247 + MIR SINE MIR 23 262 0 387 262 16 8 chr3 1963576 1963702 -225560876 - L1ME2 LINE L1 0 6164 6038 237 208 57 0 chr3 1963757 1963810 -225560768 - U6 snRNA snRNA -28 79 24 486 151 151 129 chr3 1964346 1964571 -225560007 - MER106A DNA MER1_type -6 230 1 2352 224 20 27 chr3 1964613 1965175 -225559403 + MER74A LTR ERVL 1 558 0 23 0 0 0 chr3 1965665 1965688 -225558890 + AT_rich Low_complexity Low_complexity 1 23 0 271 231 66 55 chr3 1966235 1966326 -225558252 + L2 LINE L2 3221 3312 -1 285 326 0 21 chr3 1966531 1966626 -225557952 - L2 LINE L2 -2 3311 3219 389 232 125 9 chr3 1967448 1967560 -225557018 + MIR SINE MIR 74 198 -64 249 244 58 35 chr3 1968004 1968090 -225556488 - MER103 DNA DNA -10 156 69 1999 149 10 0 chr3 1968206 1968514 -225556064 + AluSq SINE Alu 1 311 -2 1347 237 47 60 chr3 1968539 1968940 -225555638 + MLT1C LTR MaLR 6 402 -65 1880 173 0 3 chr3 1968940 1969246 -225555332 - AluJb SINE Alu -7 305 1 1347 237 47 60 chr3 1969246 1969312 -225555266 + MLT1C LTR MaLR 402 467 0 1551 174 87 0 chr3 1969835 1970100 -225554478 - AluSx SINE Alu -24 288 1 1679 168 30 16 chr3 1970689 1970866 -225553712 - AluJb SINE Alu -4 308 124 333 0 0 0 chr3 1970866 1970903 -225553675 + (TG)n Simple_repeat Simple_repeat 2 38 0 1679 168 30 16 chr3 1970903 1971029 -225553549 - AluJb SINE Alu -188 124 1 340 272 99 74 chr3 1971361 1971644 -225552934 + L1ME4a LINE L1 5611 5900 -221 2391 46 0 10 chr3 1972018 1972359 -225552219 + AluY SINE Alu 1 311 0 1914 147 47 26 chr3 1973534 1973875 -225550703 + MER7A DNA MER2_type 1 346 0 1708 215 52 48 chr3 1974619 1975122 -225549456 + MLT1D LTR MaLR 1 505 0 846 204 25 0 chr3 1975386 1975582 -225548996 - LTR37A LTR ERV1 -8 418 218 284 135 0 0 chr3 1975585 1975637 -225548941 + L1MB8 LINE L1 6127 6178 0 346 281 31 62 chr3 1975637 1975829 -225548749 - LTR37A LTR ERV1 -186 240 55 2326 291 105 32 chr3 1975909 1977550 -225547028 + L2 LINE L2 1266 3313 0 22 0 0 0 chr3 1977550 1977572 -225547006 + AT_rich Low_complexity Low_complexity 1 22 0 220 321 44 57 chr3 1978110 1978269 -225546309 + L2 LINE L2 2934 3090 -182 713 333 17 8 chr3 1978357 1978597 -225545981 + MIR SINE MIR 3 244 -18 280 100 0 50 chr3 1980110 1980170 -225544408 + (GGGAA)n Simple_repeat Simple_repeat 4 60 0 318 266 53 21 chr3 1980392 1980486 -225544092 + MIR SINE MIR 28 124 -138 1262 249 34 25 chr3 1980486 1980811 -225543767 - MER45C DNA AcHobo 0 953 626 540 141 12 0 chr3 1982028 1982113 -225542465 - AluJ/FLAM SINE Alu -226 86 1 313 301 49 42 chr3 1982148 1982291 -225542287 + L1MC4 LINE L1 6559 6702 -1340 1210 254 90 95 chr3 1983234 1984056 -225540522 - HAL1b LINE L1 0 1348 524 2483 81 0 3 chr3 1984056 1984365 -225540213 - AluSq SINE Alu -5 308 1 1210 254 90 95 chr3 1984365 1984529 -225540049 - HAL1b LINE L1 -824 524 361 1396 196 28 35 chr3 1984529 1984814 -225539764 - AluJo SINE Alu -19 283 1 1210 254 90 95 chr3 1984814 1985098 -225539480 - HAL1b LINE L1 -987 361 83 291 353 0 17 chr3 1986360 1986476 -225538102 - MIR SINE MIR -62 146 33 276 367 39 8 chr3 1986585 1986713 -225537865 + MIR3 SINE MIR 7 138 -70 200 83 0 28 chr3 1986713 1986749 -225537829 + (ATG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr3 1986799 1986827 -225537751 + AT_rich Low_complexity Low_complexity 1 28 0 421 251 127 59 chr3 1987166 1987644 -225536934 - MER34B LTR ERV1 0 565 6 322 261 12 0 chr3 1988349 1988443 -225536135 + L1MC4 LINE L1 6443 6545 -1458 525 277 63 29 chr3 1988505 1988607 -225535971 + L1MC4 LINE L1 6716 6813 -1229 203 0 0 36 chr3 1988607 1988635 -225535943 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 1988635 1988770 -225535808 + L1MC4 LINE L1 6813 6961 -1081 480 258 42 42 chr3 1988894 1989084 -225535494 + L1MC4a LINE L1 7180 7369 -439 601 233 114 52 chr3 1989355 1989489 -225535089 + L1MC4 LINE L1 7426 7550 -324 1459 198 50 3 chr3 1989489 1989787 -225534791 + AluJb SINE Alu 1 312 0 601 233 114 52 chr3 1989787 1989829 -225534749 + L1MC4 LINE L1 7550 7588 -286 1592 177 69 0 chr3 1989829 1990117 -225534461 + AluJo SINE Alu 1 308 -4 601 233 114 52 chr3 1990117 1990344 -225534234 + L1MC4 LINE L1 7588 7873 -1 603 236 15 64 chr3 1990647 1990850 -225533728 - L1ME3 LINE L1 -30 6132 5940 210 67 67 0 chr3 1990904 1990949 -225533629 + GA-rich Low_complexity Low_complexity 1 48 0 247 111 19 19 chr3 1990977 1991031 -225533547 + (GAAAA)n Simple_repeat Simple_repeat 4 57 0 1305 99 42 0 chr3 1992459 1992651 -225531927 - L1PA13 LINE L1 -1 6162 5963 21 0 0 0 chr3 1992826 1992847 -225531731 + AT_rich Low_complexity Low_complexity 1 21 0 353 250 46 46 chr3 1992997 1993105 -225531473 + MIR3 SINE MIR 54 161 -47 209 393 14 48 chr3 1993639 1993784 -225530794 - MIR SINE MIR -73 189 50 237 209 233 12 chr3 1993803 1993889 -225530689 - MER5A DNA MER1_type -8 181 77 2274 151 0 34 chr3 1993890 1994327 -225530251 + L1MA6 LINE L1 5878 6299 -1 213 94 0 0 chr3 1994425 1994457 -225530121 + (CA)n Simple_repeat Simple_repeat 1 32 0 2153 122 7 7 chr3 1994499 1994803 -225529775 - AluSx SINE Alu -8 304 1 831 167 0 0 chr3 1995803 1995935 -225528643 - AluSq/x SINE Alu -180 132 1 1209 245 42 49 chr3 1996115 1996597 -225527981 + MER39 LTR ERV1 1 687 -20 263 203 14 0 chr3 1998766 1998835 -225525743 + (CATA)n Simple_repeat Simple_repeat 3 72 0 213 363 24 24 chr3 1999933 2000101 -225524477 + MIR SINE MIR 3 170 -92 403 344 42 47 chr3 2000340 2000532 -225524046 - MIR SINE MIR -52 210 20 889 197 57 0 chr3 2000759 2000952 -225523626 + LTR16A1 LTR ERVL 254 457 0 224 295 152 0 chr3 2001390 2001495 -225523083 + MIR3 SINE MIR 63 183 -25 768 256 67 0 chr3 2002257 2002452 -225522126 - MIR SINE MIR -27 235 28 2483 69 0 3 chr3 2003210 2003515 -225521063 + AluSg SINE Alu 1 304 -6 276 340 60 0 chr3 2003828 2003928 -225520650 - MIR SINE MIR -100 162 57 22 0 0 0 chr3 2003953 2003975 -225520603 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 2005192 2005229 -225519349 + AT_rich Low_complexity Low_complexity 1 37 0 1037 159 20 0 chr3 2005332 2005527 -225519051 + L1PB1 LINE L1 2 200 -6663 12330 130 86 15 chr3 2005529 2006557 -225518021 + L1PB1 LINE L1 636 1590 -5272 2357 87 0 3 chr3 2006557 2006855 -225517723 + AluY SINE Alu 3 299 -12 12330 130 86 15 chr3 2006855 2008600 -225515978 + L1PB1 LINE L1 1590 3605 -3257 1139 231 8 0 chr3 2008598 2008866 -225515712 + L1PB1 LINE L1 3907 4176 -2686 * 5570 187 3 5 chr3 2008854 2010470 -225514108 + L1PB1 LINE L1 4785 6397 -470 1704 110 54 156 chr3 2010495 2010994 -225513584 - LTR7 LTR ERV1 -2 448 1 4585 59 5 10 chr3 2010994 2011605 -225512973 - HERVH LTR ERV1 0 7713 7106 1027 136 6 12 chr3 2011597 2011759 -225512819 - HERVH LTR ERV1 -4061 3652 3492 * 964 127 7 0 chr3 2011749 2011899 -225512679 - HERVH LTR ERV1 -4423 3290 3140 * 13507 133 24 23 chr3 2011878 2014326 -225510252 - HERVH LTR ERV1 -4718 2995 437 505 84 0 0 chr3 2014306 2014377 -225510201 - HERVH LTR ERV1 -7642 71 1 * 1958 113 57 104 chr3 2014379 2014849 -225509729 - LTR7 LTR ERV1 -2 448 1 3094 101 28 7 chr3 2014849 2014952 -225509626 + L1PB1 LINE L1 6393 6492 -375 1038 39 29 15 chr3 2014952 2015161 -225509417 + (TA)n Simple_repeat Simple_repeat 1 212 0 3094 101 28 7 chr3 2015161 2015518 -225509060 + L1PB1 LINE L1 6492 6867 0 1438 111 65 0 chr3 2015644 2015860 -225508718 + MER30 DNA MER1_type 1 230 0 1567 262 89 46 chr3 2015895 2016726 -225507852 - L1ME3A LINE L1 -16 6154 5288 296 291 70 12 chr3 2016773 2016945 -225507633 - L1ME3A LINE L1 -926 5220 5039 186 43 0 0 chr3 2016989 2017012 -225507566 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 420 262 40 24 chr3 2018256 2018382 -225506196 - MIR SINE MIR -74 188 61 1964 115 0 0 chr3 2018382 2018642 -225505936 + AluSq SINE Alu 21 280 -33 363 89 0 0 chr3 2018642 2018698 -225505880 + AluSp/q SINE Alu 245 300 -3 185 349 32 16 chr3 2018698 2018761 -225505817 - MIR SINE MIR -186 76 13 554 229 179 0 chr3 2018766 2018906 -225505672 - MER5A DNA MER1_type -1 188 24 210 190 177 76 chr3 2019102 2019181 -225505397 - L2 LINE L2 0 3313 3227 199 54 54 36 chr3 2019738 2019794 -225504784 + T-rich Low_complexity Low_complexity 6 62 0 23 0 0 0 chr3 2019936 2019959 -225504619 + AT_rich Low_complexity Low_complexity 1 23 0 244 268 0 18 chr3 2020004 2020060 -225504518 - MIR SINE MIR -161 101 47 2048 332 60 34 chr3 2020279 2021502 -225503076 + L2 LINE L2 11 1264 -2050 300 267 83 25 chr3 2022197 2022317 -225502261 - L1ME4a LINE L1 -48 6073 5947 1379 176 114 29 chr3 2023412 2023685 -225500893 - MER1B DNA MER1_type -43 296 1 21 36 0 0 chr3 2023849 2023877 -225500701 + AT_rich Low_complexity Low_complexity 1 28 0 277 244 100 91 chr3 2024008 2024238 -225500340 - L1ME3A LINE L1 -154 6016 5785 297 359 31 8 chr3 2024331 2024459 -225500119 - L2 LINE L2 0 3272 3142 967 264 136 40 chr3 2024693 2025143 -225499435 - MLT1H LTR MaLR -54 495 3 261 83 0 0 chr3 2025241 2025277 -225499301 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 865 195 6 18 chr3 2025500 2025669 -225498909 - FRAM SINE Alu -14 162 1 188 33 0 33 chr3 2025669 2025699 -225498879 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1485 213 0 11 chr3 2025704 2025990 -225498588 - AluJb SINE Alu -24 288 6 702 313 175 18 chr3 2026081 2026538 -225498040 - L2 LINE L2 -684 2630 2102 327 345 84 20 chr3 2026555 2027045 -225497533 - L1ME4a LINE L1 -297 5824 5304 764 211 155 0 chr3 2028720 2028914 -225495664 - MER58A DNA MER1_type 0 224 1 366 268 192 27 chr3 2028950 2029174 -225495404 - MIR SINE MIR 0 262 2 23 33 0 0 chr3 2029316 2029346 -225495232 + AT_rich Low_complexity Low_complexity 1 30 0 317 279 91 71 chr3 2029429 2029627 -225494951 + MIR SINE MIR 19 212 -50 202 182 0 0 chr3 2029677 2029710 -225494868 + (CA)n Simple_repeat Simple_repeat 2 34 0 194 352 114 0 chr3 2029832 2029920 -225494658 - L3b LINE CR1 -27 1556 1459 2605 103 16 0 chr3 2030411 2030780 -225493798 + THE1C LTR MaLR 1 375 0 313 286 24 0 chr3 2030921 2031005 -225493573 + L2 LINE L2 3222 3307 -6 508 361 47 29 chr3 2031036 2031377 -225493201 - LTR16C LTR ERVL -8 483 137 291 291 60 46 chr3 2032484 2032635 -225491943 + MIR SINE MIR 5 157 -105 229 218 11 35 chr3 2032697 2032784 -225491794 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 409 302 63 6 chr3 2033191 2033350 -225491228 - MLT1F LTR MaLR -374 168 1 438 335 182 23 chr3 2033500 2033939 -225490639 - L2 LINE L2 -1 3312 2804 235 182 55 0 chr3 2033997 2034052 -225490526 - L2 LINE L2 -6 3307 3250 22 0 0 0 chr3 2034375 2034397 -225490181 + AT_rich Low_complexity Low_complexity 1 22 0 3506 142 39 32 chr3 2034397 2035087 -225489491 - L1MA7 LINE L1 0 6291 5597 324 283 75 12 chr3 2035650 2035823 -225488755 + MER113 DNA MER1_type? 34 217 -304 690 130 290 0 chr3 2036774 2036912 -225487666 - AluSc SINE Alu -5 304 127 289 301 0 32 chr3 2037175 2037268 -225487310 + MIR SINE MIR 78 167 -95 25 0 0 0 chr3 2037525 2037550 -225487028 + AT_rich Low_complexity Low_complexity 1 25 0 2575 50 0 0 chr3 2038150 2038449 -225486129 + AluY SINE Alu 1 299 -12 984 172 0 0 chr3 2038658 2038809 -225485769 + FRAM SINE Alu 1 150 -26 554 314 58 36 chr3 2038910 2039133 -225485445 - MIR SINE MIR -27 235 8 194 286 0 0 chr3 2040653 2040702 -225483876 + MIR SINE MIR 2 50 -212 1345 175 114 25 chr3 2040717 2040997 -225483581 - AluSx SINE Alu -2 310 6 2422 135 3 3 chr3 2041720 2042082 -225482496 + THE1B LTR MaLR 2 363 -1 229 239 149 30 chr3 2042150 2042217 -225482361 + MIR SINE MIR 112 186 -76 24 32 0 0 chr3 2043978 2044009 -225480569 + AT_rich Low_complexity Low_complexity 1 31 0 196 333 0 13 chr3 2044654 2044729 -225479849 - MIR SINE MIR -21 241 168 181 323 15 0 chr3 2045383 2045448 -225479130 + L2 LINE L2 2171 2236 -1078 1915 139 4 0 chr3 2045453 2045726 -225478852 - MER1A DNA MER1_type -194 335 62 190 371 14 0 chr3 2045763 2045833 -225478745 + L2 LINE L2 2302 2372 -942 300 310 41 16 chr3 2046555 2046757 -225477821 - MLT1J LTR MaLR -1 510 241 310 252 126 17 chr3 2046877 2046996 -225477582 - MLT1J LTR MaLR -371 140 9 2188 132 0 3 chr3 2047172 2047483 -225477095 - AluSx SINE Alu 0 312 3 255 200 0 0 chr3 2047528 2047573 -225477005 - MIR SINE MIR -121 141 97 332 302 75 0 chr3 2047575 2047681 -225476897 + L3 LINE CR1 1463 1576 -1 369 336 69 18 chr3 2048567 2048711 -225475867 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 2048711 2048731 -225475847 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 2048731 2048803 -225475775 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 2048830 2048885 -225475693 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 2049245 2049467 -225475111 - MIR SINE MIR -40 222 9 23 0 0 0 chr3 2050042 2050065 -225474513 + AT_rich Low_complexity Low_complexity 1 23 0 2300 106 0 0 chr3 2050284 2050587 -225473991 - AluSx SINE Alu -7 305 3 974 258 57 8 chr3 2050628 2050876 -225473702 - MLT1E3 LTR MaLR -194 430 171 403 276 118 0 chr3 2050904 2051031 -225473547 - MLT1E3 LTR MaLR -505 149 8 1801 118 92 0 chr3 2051289 2051561 -225473017 - AluSg SINE Alu -12 298 2 243 0 0 0 chr3 2051808 2051835 -225472743 + (CA)n Simple_repeat Simple_repeat 2 28 0 1743 124 70 4 chr3 2052806 2053079 -225471499 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 2053087 2053115 -225471463 + AT_rich Low_complexity Low_complexity 1 28 0 2175 102 3 0 chr3 2053542 2053857 -225470721 + AluSq SINE Alu 1 313 0 1869 299 120 15 chr3 2054356 2055359 -225469219 - L2 LINE L2 -4 3309 2185 205 318 0 0 chr3 2055358 2055421 -225469157 - MIR SINE MIR -16 246 184 * 3370 84 8 73 chr3 2056007 2056022 -225468556 + L1M1 LINE L1 3535 3549 -4016 3086 57 0 86 chr3 2056022 2056500 -225468078 - L1PA7 LINE L1 0 6154 5718 3370 84 8 73 chr3 2056500 2057047 -225467531 + L1M1 LINE L1 3549 4062 -3503 788 267 37 5 chr3 2057047 2057234 -225467344 - MER20 DNA MER1_type -26 193 1 2216 164 57 33 chr3 2057393 2057849 -225466729 + MER41B LTR ERV1 113 579 -56 286 198 0 99 chr3 2057826 2057907 -225466671 + MER66B LTR ERV1 403 475 -11 * 2372 74 0 10 chr3 2059486 2059797 -225464781 - AluY SINE Alu -2 309 2 821 259 0 0 chr3 2059815 2060004 -225464574 + MER5A DNA MER1_type 1 189 0 3678 119 15 0 chr3 2060339 2060885 -225463693 - MER41A LTR ERV1 0 554 1 610 324 86 47 chr3 2061782 2062270 -225462308 - L3 LINE CR1 -6 1571 1065 307 361 32 32 chr3 2062276 2062431 -225462147 + MER5A DNA MER1_type 35 189 0 190 197 45 0 chr3 2063041 2063107 -225461471 + CT-rich Low_complexity Low_complexity 4 72 0 1913 265 67 8 chr3 2063756 2064401 -225460177 + L1ME2 LINE L1 5465 6147 -17 825 142 8 15 chr3 2064796 2064930 -225459648 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr3 2065389 2065413 -225459165 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr3 2066789 2066810 -225457768 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr3 2066953 2066998 -225457580 + AT_rich Low_complexity Low_complexity 1 45 0 316 283 50 8 chr3 2067290 2067410 -225457168 + MER46C DNA MER2_type 85 209 -129 186 43 0 0 chr3 2067455 2067478 -225457100 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr3 2067821 2067844 -225456734 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr3 2067853 2067875 -225456703 + AT_rich Low_complexity Low_complexity 1 22 0 289 346 163 0 chr3 2068510 2068663 -225455915 - MER5A DNA MER1_type -2 187 10 276 306 36 27 chr3 2069415 2069526 -225455052 - MIR SINE MIR -124 138 27 335 295 94 62 chr3 2069551 2069775 -225454803 + MIR SINE MIR 19 249 -13 2120 88 0 34 chr3 2069808 2070104 -225454474 - AluY SINE Alu -20 291 6 962 149 11 0 chr3 2070273 2070448 -225454130 + GA-rich Low_complexity Low_complexity 4 180 0 286 256 60 8 chr3 2070509 2070626 -225453952 - L1MC4 LINE L1 -2 8040 7918 21 0 0 0 chr3 2070730 2070751 -225453827 + AT_rich Low_complexity Low_complexity 1 21 0 2334 100 0 0 chr3 2070848 2071158 -225453420 - AluSg SINE Alu 0 310 1 1759 224 47 63 chr3 2072551 2073427 -225451151 - L1MCb LINE L1 -4852 844 333 679 266 5 18 chr3 2073426 2073644 -225450934 - L1MCb LINE L1 -5467 929 715 * 429 321 32 43 chr3 2073870 2074147 -225450431 - L1MCb LINE L1 -6031 365 92 281 297 31 78 chr3 2074159 2074287 -225450291 - MIR SINE MIR -124 138 17 322 311 87 6 chr3 2074369 2074530 -225450048 + L1ME4a LINE L1 5946 6119 -2 2005 114 20 7 chr3 2074535 2074833 -225449745 + AluSg SINE Alu 1 302 -8 184 206 0 0 chr3 2076781 2076815 -225447763 - L2 LINE L2 0 3313 3280 5703 194 38 15 chr3 2077233 2078112 -225446466 - L1MC3 LINE L1 -20 7765 6847 324 0 0 0 chr3 2078112 2078148 -225446430 + (TG)n Simple_repeat Simple_repeat 1 36 0 5703 194 38 15 chr3 2078148 2078541 -225446037 - L1MC3 LINE L1 -938 6847 6464 5650 243 28 20 chr3 2078534 2080505 -225444073 - L1MC3 LINE L1 -744 5402 3586 * 1849 113 4 0 chr3 2080545 2080792 -225443786 + AluSp SINE Alu 1 248 -65 187 213 25 0 chr3 2080939 2081019 -225443559 + (TA)n Simple_repeat Simple_repeat 1 82 0 610 197 9 4 chr3 2081043 2081285 -225443293 + (TA)n Simple_repeat Simple_repeat 1 243 0 438 271 76 70 chr3 2081483 2081811 -225442767 - L1ME4a LINE L1 -237 5884 5555 186 43 0 0 chr3 2082014 2082037 -225442541 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 412 342 71 29 chr3 2082446 2082686 -225441892 + MIR SINE MIR 3 252 -10 25 0 0 0 chr3 2082874 2082899 -225441679 + AT_rich Low_complexity Low_complexity 1 25 0 259 226 130 75 chr3 2083104 2083250 -225441328 - MIR SINE MIR -13 249 96 1448 168 80 77 chr3 2083390 2083742 -225440836 - MLT1A1 LTR MaLR -2 363 11 271 255 0 0 chr3 2085253 2085304 -225439274 + L2 LINE L2 3212 3262 -10 25 31 0 0 chr3 2085732 2085764 -225438814 + AT_rich Low_complexity Low_complexity 1 32 0 377 250 37 9 chr3 2085781 2085889 -225438689 - MIR SINE MIR -24 238 128 2732 123 24 7 chr3 2085893 2086309 -225438269 - MSTA LTR MaLR -1 427 5 526 310 88 52 chr3 2087066 2087569 -225437009 - MLT1K LTR MaLR -2 586 66 469 88 25 12 chr3 2087761 2087841 -225436737 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 654 315 63 48 chr3 2088192 2088655 -225435923 - LTR16C LTR ERVL -21 470 1 519 101 13 0 chr3 2088868 2088947 -225435631 + MADE1 DNA Mariner 1 80 0 396 0 0 0 chr3 2089527 2089571 -225435007 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 650 280 100 22 chr3 2090908 2091179 -225433399 + L2 LINE L2 3020 3311 -2 273 57 0 0 chr3 2092322 2092357 -225432221 + (TG)n Simple_repeat Simple_repeat 2 36 0 228 314 0 0 chr3 2092935 2093005 -225431573 - MIR SINE MIR -142 120 51 279 345 176 0 chr3 2095725 2095890 -225428688 - MIR SINE MIR -3 259 66 201 74 0 0 chr3 2095903 2095930 -225428648 + (CAT)n Simple_repeat Simple_repeat 2 28 0 702 324 8 32 chr3 2095939 2096186 -225428392 - MIR SINE MIR -10 252 12 329 297 141 64 chr3 2097568 2097945 -225426633 - MLT1L LTR MaLR -8 503 98 308 145 0 16 chr3 2098748 2098810 -225425768 + (TA)n Simple_repeat Simple_repeat 1 61 0 250 242 10 10 chr3 2098847 2098946 -225425632 + (TA)n Simple_repeat Simple_repeat 2 100 0 423 289 22 33 chr3 2099167 2099347 -225425231 - MIR SINE MIR 0 262 85 21 0 0 0 chr3 2099640 2099661 -225424917 + AT_rich Low_complexity Low_complexity 1 21 0 390 333 13 19 chr3 2100518 2100677 -225423901 - Charlie8 DNA MER1_type -2147 270 113 288 315 148 9 chr3 2100933 2101041 -225423537 + L2 LINE L2 3150 3272 0 591 213 0 0 chr3 2102161 2102297 -225422281 + GA-rich Low_complexity Low_complexity 3 138 0 190 398 54 0 chr3 2103483 2103576 -225421002 - MIR3 SINE MIR -96 112 15 237 326 12 12 chr3 2103961 2104047 -225420531 + MIR3 SINE MIR 13 98 -110 22 0 0 0 chr3 2104064 2104086 -225420492 + AT_rich Low_complexity Low_complexity 1 22 0 362 299 28 19 chr3 2104388 2104495 -225420083 + L2 LINE L2 3150 3257 -15 22 70 0 0 chr3 2104505 2104548 -225420030 + AT_rich Low_complexity Low_complexity 1 43 0 351 238 95 0 chr3 2104620 2104704 -225419874 - L2 LINE L2 -1 3271 3180 304 322 50 3 chr3 2104757 2104869 -225419709 + MIR SINE MIR 31 143 -73 1601 165 0 63 chr3 2105440 2105773 -225418805 + AluJo SINE Alu 1 312 0 206 32 32 0 chr3 2105855 2105886 -225418692 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 196 329 68 0 chr3 2105920 2105993 -225418585 - MIR SINE MIR -1 261 184 182 287 194 19 chr3 2106639 2106747 -225417831 + MIR SINE MIR 17 143 -65 287 333 95 0 chr3 2107977 2108103 -225416475 - MER5A DNA MER1_type 0 189 52 186 311 66 66 chr3 2107995 2108146 -225416432 + MER5A DNA MER1_type 37 187 -2 * 32 0 0 0 chr3 2108611 2108643 -225415935 + AT_rich Low_complexity Low_complexity 1 32 0 364 330 98 25 chr3 2109688 2109891 -225414687 - MIR SINE MIR -37 225 8 21 0 0 0 chr3 2110880 2110901 -225413677 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 2111818 2111843 -225412735 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1949 120 0 0 chr3 2111846 2112121 -225412457 - AluSg SINE Alu -35 275 1 347 182 13 39 chr3 2112550 2112627 -225411951 + Tigger2 DNA MER2_type 2 76 -2642 * 2466 157 25 11 chr3 2112606 2113045 -225411533 + Tigger2 DNA MER2_type 2273 2717 -1 386 299 92 51 chr3 2113375 2113592 -225410986 - MIR SINE MIR -18 244 19 182 296 0 0 chr3 2113704 2113748 -225410830 + MIR3 SINE MIR 8 51 -157 1986 142 3 0 chr3 2114813 2115109 -225409469 - AluSx SINE Alu -15 297 1 1498 160 52 119 chr3 2115962 2116425 -225408153 + MSTB1 LTR MaLR 1 432 0 484 339 37 45 chr3 2117740 2117982 -225406596 - MIR SINE MIR -16 246 7 204 179 0 0 chr3 2118271 2118310 -225406268 + (CATA)n Simple_repeat Simple_repeat 2 40 0 454 311 41 15 chr3 2118420 2118616 -225405962 + MIR SINE MIR 51 251 -11 25 75 0 0 chr3 2119700 2119753 -225404825 + AT_rich Low_complexity Low_complexity 1 53 0 474 248 33 62 chr3 2124176 2124386 -225400192 + L2 LINE L2 3109 3312 -1 547 322 22 6 chr3 2127108 2127291 -225397287 - MIR SINE MIR -13 249 64 469 248 132 45 chr3 2127566 2127832 -225396746 - L1ME2 LINE L1 -9 6155 5867 22 0 0 0 chr3 2127852 2127874 -225396704 + AT_rich Low_complexity Low_complexity 1 22 0 1645 187 42 3 chr3 2128481 2128765 -225395813 + AluJo SINE Alu 1 295 -17 260 240 80 0 chr3 2129586 2129661 -225394917 - HAL1 LINE L1 -477 2030 1950 969 313 93 8 chr3 2129669 2130151 -225394427 - HAL1 LINE L1 -726 1781 1259 180 210 37 0 chr3 2130208 2130289 -225394289 + (TA)n Simple_repeat Simple_repeat 1 84 0 951 279 114 30 chr3 2130320 2130758 -225393820 + L2 LINE L2 2150 2624 -690 423 184 26 0 chr3 2130767 2130843 -225393735 + MER20 DNA MER1_type 9 86 -133 241 364 0 0 chr3 2131004 2131081 -225393497 + L2 LINE L2 2681 2757 -557 524 311 97 25 chr3 2131945 2132780 -225391798 + L1MEc LINE L1 786 1680 -4716 4418 186 14 44 chr3 2132793 2133773 -225390805 - L1MA9 LINE L1 -30 6282 5332 696 236 42 23 chr3 2134765 2135028 -225389550 - L1MC5 LINE L1 -18 7943 7676 29 0 0 0 chr3 2135341 2135370 -225389208 + AT_rich Low_complexity Low_complexity 1 29 0 331 67 0 0 chr3 2135371 2135416 -225389162 + MADE1 DNA Mariner 36 80 0 315 303 91 51 chr3 2135689 2135864 -225388714 + MER5A DNA MER1_type 7 188 -1 1656 134 49 37 chr3 2136718 2137046 -225387532 - L1MA7 LINE L1 -4 6287 5956 4616 202 107 47 chr3 2137091 2138637 -225385941 + MER45R DNA AcHobo 1 1580 -1 238 349 0 23 chr3 2139095 2139181 -225385397 + L2 LINE L2 3229 3312 -1 254 238 138 0 chr3 2139831 2139911 -225384667 - L1MC5 LINE L1 -397 7564 7474 363 42 0 0 chr3 2139929 2139977 -225384601 - L1PA3 LINE L1 -3 6152 6105 1175 47 0 0 chr3 2139977 2140125 -225384453 + L1PA4 LINE L1 5930 6077 -78 1988 142 10 0 chr3 2140265 2140568 -225384010 + AluSx SINE Alu 6 311 -1 31 82 0 0 chr3 2143481 2143554 -225381024 + AT_rich Low_complexity Low_complexity 1 73 0 269 306 189 0 chr3 2144644 2144755 -225379823 - MIR SINE MIR -57 151 20 221 273 0 0 chr3 2148198 2148253 -225376325 + L2 LINE L2 3254 3308 -5 265 344 164 0 chr3 2148311 2148433 -225376145 - MIR SINE MIR -14 248 107 348 239 182 115 chr3 2148926 2149080 -225375498 + MER58A DNA MER1_type 1 174 -2246 1145 124 31 26 chr3 2149080 2149274 -225375304 + L1PA16 LINE L1 5962 6156 -10 348 239 182 115 chr3 2149274 2149328 -225375250 + MER58A DNA MER1_type 174 223 -1 645 295 18 5 chr3 2150279 2150496 -225374082 - MER58A DNA MER1_type -3 221 2 22 0 0 0 chr3 2151789 2151811 -225372767 + AT_rich Low_complexity Low_complexity 1 22 0 2173 181 17 67 chr3 2153239 2153715 -225370863 - MER66A LTR ERV1 0 478 27 676 152 29 14 chr3 2153787 2153925 -225370653 + L1MB1 LINE L1 6023 6162 -6 316 316 0 50 chr3 2154314 2154453 -225370125 + L1MC4 LINE L1 6571 6702 -1340 * 328 255 39 39 chr3 2154424 2154526 -225370052 - L1MC4 LINE L1 -1339 6703 6602 338 291 122 35 chr3 2155718 2155948 -225368630 + MIR SINE MIR 1 250 -12 42122 34 25 2 chr3 2157248 2163259 -225361319 + L1PA2 LINE L1 1 6155 0 23 0 0 0 chr3 2163597 2163620 -225360958 + AT_rich Low_complexity Low_complexity 1 23 0 1759 203 30 86 chr3 2164925 2165448 -225359130 - MLT1D LTR MaLR -8 618 1 310 259 99 15 chr3 2165456 2165587 -225358991 - MIR SINE MIR -15 247 106 392 287 64 35 chr3 2166092 2166311 -225358267 + MIR SINE MIR 20 245 -17 270 339 68 41 chr3 2166773 2166994 -225357584 - L2 LINE L2 -2 3311 3085 189 277 21 0 chr3 2167059 2167106 -225357472 - L2 LINE L2 -342 2971 2924 406 289 87 0 chr3 2169417 2169521 -225355057 - L2 LINE L2 -2 3270 3158 216 350 82 0 chr3 2170014 2170111 -225354467 + MIR3 SINE MIR 56 160 -48 450 323 30 6 chr3 2172501 2172665 -225351913 - MER117 DNA MER1_type 0 197 30 2379 132 3 19 chr3 2175824 2176194 -225348384 - THE1B LTR MaLR 0 364 1 1495 219 148 37 chr3 2176299 2176331 -225348247 - MLT2B1 LTR ERVL -8 512 485 300 27 0 0 chr3 2176331 2176368 -225348210 + (TG)n Simple_repeat Simple_repeat 1 37 0 1495 219 148 37 chr3 2176368 2176796 -225347782 - MLT2B1 LTR ERVL -35 485 1 22 0 0 0 chr3 2177424 2177446 -225347132 + AT_rich Low_complexity Low_complexity 1 22 0 193 210 40 0 chr3 2177604 2177704 -225346874 + (TTTA)n Simple_repeat Simple_repeat 4 107 0 1725 111 4 12 chr3 2178144 2178388 -225346190 + AluSx SINE Alu 1 242 -70 28 0 0 0 chr3 2178426 2178454 -225346124 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr3 2179454 2179501 -225345077 + (TA)n Simple_repeat Simple_repeat 1 47 0 2211 121 3 6 chr3 2179501 2179814 -225344764 - AluSx SINE Alu 0 312 1 840 131 0 0 chr3 2179986 2180108 -225344470 + FRAM SINE Alu 35 156 -20 331 331 18 18 chr3 2180248 2180411 -225344167 + L2 LINE L2 3147 3309 -4 22 21 0 62 chr3 2180520 2180568 -225344010 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chr3 2180657 2180688 -225343890 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2247 56 3 0 chr3 2180688 2180973 -225343605 - L1PA8 LINE L1 -24 6148 5863 25 0 0 0 chr3 2181021 2181046 -225343532 + AT_rich Low_complexity Low_complexity 1 25 0 320 296 68 31 chr3 2181666 2181828 -225342750 + MER102a DNA MER1_type 163 330 0 513 315 211 28 chr3 2182309 2182974 -225341604 - L2 LINE L2 -168 3104 2304 180 260 6 172 chr3 2182974 2183143 -225341435 + MIR3 SINE MIR 3 143 -65 2350 159 32 34 chr3 2183346 2183850 -225340728 + L1MA8 LINE L1 5785 6287 -4 346 308 147 53 chr3 2185843 2186278 -225338300 + L2 LINE L2 2826 3301 -12 30 69 0 0 chr3 2186302 2186360 -225338218 + AT_rich Low_complexity Low_complexity 1 58 0 2647 112 3 3 chr3 2186590 2186965 -225337613 - THE1C LTR MaLR 0 375 1 309 270 11 11 chr3 2187019 2187108 -225337470 - MER117 DNA MER1_type -107 90 2 1127 221 69 1 chr3 2187262 2187581 -225336997 + MLT1D LTR MaLR 128 505 0 271 217 11 11 chr3 2187718 2187810 -225336768 + (TA)n Simple_repeat Simple_repeat 2 93 0 397 310 48 7 chr3 2188392 2188537 -225336041 + MIR SINE MIR 66 216 -46 387 248 59 20 chr3 2189629 2189782 -225334796 - MER103 DNA DNA -2 164 6 198 103 0 0 chr3 2190609 2190638 -225333940 + (TA)n Simple_repeat Simple_repeat 2 30 0 429 274 48 43 chr3 2190640 2190826 -225333752 - MIR SINE MIR -70 192 6 621 287 18 0 chr3 2190836 2191000 -225333578 + LTR33 LTR ERVL 1 167 -354 899 301 57 57 chr3 2191123 2191672 -225332906 + MLT1H LTR MaLR 1 549 0 271 360 51 22 chr3 2191930 2192108 -225332470 - MIR SINE MIR -78 184 2 377 377 34 17 chr3 2192752 2192988 -225331590 + MIR SINE MIR 23 262 0 366 139 0 0 chr3 2193226 2193298 -225331280 + (TG)n Simple_repeat Simple_repeat 1 72 0 323 305 103 33 chr3 2194322 2194535 -225330043 - MIR SINE MIR -31 231 4 283 357 45 9 chr3 2194756 2194868 -225329710 - MIR SINE MIR -115 147 32 241 326 34 11 chr3 2195290 2195379 -225329199 - L2 LINE L2 -190 3082 2992 180 278 188 21 chr3 2195557 2195701 -225328877 - MIR SINE MIR -46 216 49 183 42 0 0 chr3 2196332 2196356 -225328222 + (TC)n Simple_repeat Simple_repeat 2 25 0 1751 181 7 13 chr3 2196356 2196655 -225327923 - AluJb SINE Alu -13 299 3 252 267 12 23 chr3 2196690 2196776 -225327802 - MIR SINE MIR 0 262 178 257 314 6 70 chr3 2196828 2196930 -225327648 + MIR SINE MIR 8 98 -164 3190 158 10 46 chr3 2196930 2197164 -225327414 - MER6A DNA MER2_type -260 605 364 1704 166 3 28 chr3 2197164 2197454 -225327124 + AluJo SINE Alu 1 283 -29 3190 158 10 46 chr3 2197454 2197846 -225326732 - MER6A DNA MER2_type -501 364 2 257 314 6 70 chr3 2197846 2197899 -225326679 + MIR SINE MIR 98 153 -109 281 378 66 42 chr3 2198400 2198641 -225325937 + L3b LINE CR1 1317 1563 -20 299 333 38 50 chr3 2200042 2200201 -225324377 - MIR3 SINE MIR -25 183 27 209 269 90 67 chr3 2200864 2200998 -225323580 + MIR SINE MIR 126 262 0 249 338 0 0 chr3 2201117 2201194 -225323384 + MIR3 SINE MIR 125 201 -7 2286 29 11 4 chr3 2202201 2202559 -225322019 - AluY SINE Alu 0 360 1 366 264 45 10 chr3 2202889 2203026 -225321552 + L1ME3 LINE L1 3524 3666 -2480 25 31 0 0 chr3 2203052 2203084 -225321494 + AT_rich Low_complexity Low_complexity 1 32 0 2330 268 73 46 chr3 2203118 2203399 -225321179 + L1ME3 LINE L1 3671 3943 -2219 1246 202 102 60 chr3 2203399 2203829 -225320749 + LTR47A LTR ERVL 5 452 0 2330 268 73 46 chr3 2203829 2205501 -225319077 + L1ME3 LINE L1 3943 5705 -457 1796 155 0 20 chr3 2205501 2205798 -225318780 + AluSx SINE Alu 1 291 -21 2330 268 73 46 chr3 2205798 2206269 -225318309 + L1ME3 LINE L1 5705 6162 0 30 27 0 0 chr3 2206618 2206655 -225317923 + AT_rich Low_complexity Low_complexity 1 37 0 193 381 12 0 chr3 2208021 2208105 -225316473 + L2 LINE L2 3188 3272 0 199 250 108 42 chr3 2208358 2208478 -225316100 + L2 LINE L2 2916 3043 -229 3707 192 40 34 chr3 2209876 2210734 -225313844 + MER21B LTR ERV1 1 863 0 311 296 85 63 chr3 2210808 2211207 -225313371 - L1 LINE L1 -2628 3518 3111 750 261 18 0 chr3 2211980 2212145 -225312433 - MER45A DNA AcHobo -10 168 1 546 276 83 11 chr3 2213757 2213938 -225310640 + MIR SINE MIR 36 229 -33 733 228 35 6 chr3 2213988 2214159 -225310419 - MER5B DNA MER1_type 0 178 3 294 303 148 68 chr3 2215291 2215453 -225309125 + MER5A DNA MER1_type 14 188 -1 432 0 0 0 chr3 2215886 2215934 -225308644 + (TG)n Simple_repeat Simple_repeat 2 49 0 1544 91 70 17 chr3 2218042 2218283 -225306295 + L1PA13 LINE L1 5909 6162 -1 23 0 10 0 chr3 2218283 2218352 -225306226 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 2218375 2218399 -225306179 + AT_rich Low_complexity Low_complexity 1 24 0 632 294 131 0 chr3 2219344 2219565 -225305013 + MIR SINE MIR 3 252 -10 196 337 24 24 chr3 2219579 2219662 -225304916 - MIR3 SINE MIR -33 175 93 273 298 12 36 chr3 2219735 2219819 -225304759 + MIR SINE MIR 43 124 -84 * 436 270 43 9 chr3 2219812 2219927 -225304651 - MIR SINE MIR -143 119 1 291 269 0 65 chr3 2220079 2220172 -225304406 + MER5B DNA MER1_type 1 87 -91 1111 180 23 59 chr3 2220935 2221220 -225303358 + AluJb SINE Alu 65 340 0 23 0 0 0 chr3 2221303 2221326 -225303252 + AT_rich Low_complexity Low_complexity 1 23 0 3284 135 19 17 chr3 2223615 2224141 -225300437 - MER1A DNA MER1_type 0 527 1 2508 112 99 7 chr3 2225012 2225471 -225299107 + LTR12 LTR ERV1 1 714 0 214 137 39 39 chr3 2225712 2225763 -225298815 + T-rich Low_complexity Low_complexity 2 52 0 1989 140 0 13 chr3 2225862 2226176 -225298402 + AluSx SINE Alu 3 312 0 39 22 0 0 chr3 2226177 2226223 -225298355 + AT_rich Low_complexity Low_complexity 1 46 0 349 318 88 7 chr3 2226280 2226428 -225298150 - MIR SINE MIR -16 246 87 279 193 9 23 chr3 2227505 2227624 -225296954 - MIR SINE MIR -1 261 86 26 0 0 0 chr3 2227700 2227726 -225296852 + AT_rich Low_complexity Low_complexity 1 26 0 540 260 80 35 chr3 2228224 2228424 -225296154 - MLT1K LTR MaLR -4 584 376 12019 55 2 0 chr3 2228751 2231053 -225293525 - L1PA5 LINE L1 -1 6153 3848 380 378 11 6 chr3 2231102 2231282 -225293296 + L2 LINE L2 2599 2779 -535 819 208 26 26 chr3 2231340 2231532 -225293046 - MER3 DNA MER1_type -17 192 1 312 334 93 64 chr3 2231621 2231965 -225292613 + L2 LINE L2 2919 3272 0 21 0 0 0 chr3 2233410 2233431 -225291147 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 0 53 chr3 2233448 2233695 -225290883 - MIR SINE MIR -14 248 15 2285 122 0 0 chr3 2234679 2234991 -225289587 - AluSx SINE Alu 0 312 1 941 292 131 43 chr3 2235021 2235752 -225288826 + HAL1 LINE L1 641 1463 -1044 1392 210 62 25 chr3 2235752 2236109 -225288469 + MLT1A2 LTR MaLR 5 374 0 941 292 131 43 chr3 2236109 2236258 -225288320 + HAL1 LINE L1 1463 1598 -909 1373 188 68 4 chr3 2236708 2237005 -225287573 - AluJo SINE Alu 0 315 2 183 283 0 19 chr3 2237207 2237260 -225287318 + L2 LINE L2 3217 3268 -4 2090 128 0 0 chr3 2237270 2237566 -225287012 + AluSx SINE Alu 2 297 -15 21 0 0 0 chr3 2237890 2237911 -225286667 + AT_rich Low_complexity Low_complexity 1 21 0 444 96 0 60 chr3 2240005 2240088 -225284490 - L1PA13 LINE L1 -11 6152 6075 319 252 31 126 chr3 2240163 2240190 -225284388 - MER5B DNA MER1_type -16 162 134 1829 122 8 0 chr3 2240190 2240444 -225284134 + AluSx SINE Alu 36 291 -21 319 252 31 126 chr3 2240444 2240575 -225284003 - MER5B DNA MER1_type -44 134 19 205 300 10 40 chr3 2240858 2240958 -225283620 - L3b LINE CR1 -172 1411 1315 500 186 0 16 chr3 2242336 2242465 -225282113 + (TATATG)n Simple_repeat Simple_repeat 4 130 0 291 28 0 0 chr3 2242478 2242514 -225282064 + (CA)n Simple_repeat Simple_repeat 2 37 0 991 296 90 35 chr3 2242530 2242963 -225281615 - LTR16B LTR ERVL 0 464 8 2995 214 19 16 chr3 2244150 2244693 -225279885 + L1 LINE L1 4488 5035 -1111 207 0 0 0 chr3 2244693 2244716 -225279862 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2995 214 19 16 chr3 2244716 2244915 -225279663 + L1 LINE L1 5035 5232 -914 339 344 46 0 chr3 2245947 2246098 -225278480 - MIR SINE MIR -3 259 102 1819 168 0 19 chr3 2246115 2246430 -225278148 + AluJb SINE Alu 1 309 -3 41645 61 2 0 chr3 2247180 2253314 -225271264 + L1PA5 LINE L1 11 6153 -1 233 113 28 28 chr3 2253592 2253657 -225270921 + (TA)n Simple_repeat Simple_repeat 2 67 0 1632 161 14 14 chr3 2253657 2253942 -225270636 - AluJo SINE Alu -27 285 1 330 143 0 14 chr3 2254278 2254348 -225270230 - L1MB7 LINE L1 -5 6179 6111 408 321 93 12 chr3 2254387 2254633 -225269945 - L1ME4a LINE L1 -257 5864 5599 222 37 0 0 chr3 2254721 2254748 -225269830 + (CA)n Simple_repeat Simple_repeat 2 28 0 482 46 15 0 chr3 2254750 2254815 -225269763 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 247 321 83 46 chr3 2254934 2255043 -225269535 + MIR3 SINE MIR 3 115 -93 626 251 79 100 chr3 2255056 2255447 -225269131 + MSTD LTR MaLR 1 383 -13 372 210 0 0 chr3 2255606 2255687 -225268891 + (TA)n Simple_repeat Simple_repeat 1 81 0 1826 149 17 3 chr3 2255687 2255988 -225268590 - AluJb SINE Alu -7 305 1 289 324 101 21 chr3 2256413 2256889 -225267689 - L1M4 LINE L1 -2412 3734 3221 321 221 72 171 chr3 2257202 2257457 -225267121 - L1M4 LINE L1 -3235 2911 2727 1917 125 3 14 chr3 2257457 2257753 -225266825 + AluSx SINE Alu 3 295 -17 321 221 72 171 chr3 2257753 2257994 -225266584 - L1M4 LINE L1 -3419 2727 2464 642 186 57 52 chr3 2258004 2258198 -225266380 - MER63 DNA MER1_type -1 1061 867 332 328 16 0 chr3 2258198 2258326 -225266252 + L1MC4 LINE L1 7307 7436 -606 600 228 11 97 chr3 2258430 2258760 -225265818 - L1ME4a LINE L1 -702 5464 5165 972 278 126 68 chr3 2258794 2259859 -225264719 - L1MC4a LINE L1 -1011 6797 5671 1670 238 106 14 chr3 2260546 2261058 -225263520 + MLT1F1 LTR MaLR 9 567 0 2288 236 75 38 chr3 2261155 2261840 -225262738 - MER21B LTR ERV1 -54 809 100 314 147 44 0 chr3 2261966 2262034 -225262544 + MER58 DNA MER1_type 2288 2358 -62 5345 133 10 0 chr3 2262041 2263298 -225261280 - L1PB3 LINE L1 0 6154 4887 29 28 0 0 chr3 2263518 2263554 -225261024 + AT_rich Low_complexity Low_complexity 1 36 0 393 290 96 28 chr3 2266212 2266608 -225257970 + L1ME4a LINE L1 5629 6051 -70 2925 195 40 15 chr3 2267443 2268124 -225256454 + L1MC2 LINE L1 5636 6333 -11 22 35 0 0 chr3 2268232 2268261 -225256317 + AT_rich Low_complexity Low_complexity 1 29 0 209 194 0 16 chr3 2268352 2268414 -225256164 + CT-rich Low_complexity Low_complexity 2 62 0 267 31 0 0 chr3 2269171 2269203 -225255375 + (GA)n Simple_repeat Simple_repeat 2 33 0 2015 197 15 5 chr3 2269324 2269714 -225254864 - MSTD LTR MaLR 0 396 3 412 222 134 8 chr3 2270823 2271025 -225253553 - MER67D LTR ERV1 0 514 233 2770 176 3 4 chr3 2271027 2271894 -225252684 + L1PB1 LINE L1 4806 5672 -479 734 113 0 0 chr3 2271905 2272020 -225252558 - L1P5 LINE L1 -362 5789 5675 281 98 49 0 chr3 2272025 2272066 -225252512 - L1P5 LINE L1 -425 5726 5684 180 0 0 0 chr3 2272066 2272086 -225252492 + (TA)n Simple_repeat Simple_repeat 1 20 0 2331 123 3 6 chr3 2272086 2272445 -225252133 + L1PB1 LINE L1 5794 6151 0 423 0 0 0 chr3 2272462 2272509 -225252069 + (CA)n Simple_repeat Simple_repeat 2 48 0 963 144 33 93 chr3 2272512 2272727 -225251851 - MER67D LTR ERV1 -312 202 1 21 36 0 0 chr3 2274714 2274742 -225249836 + AT_rich Low_complexity Low_complexity 1 28 0 297 164 0 36 chr3 2275860 2275915 -225248663 + MIR SINE MIR 1 53 -209 996 237 10 5 chr3 2275991 2276198 -225248380 + MER58A DNA MER1_type 17 224 0 238 150 0 0 chr3 2276354 2276394 -225248184 - L1MB7 LINE L1 -13 6171 6132 2045 247 59 22 chr3 2276489 2277214 -225247364 - L1MB7 LINE L1 -195 5989 5239 267 325 67 17 chr3 2277317 2277437 -225247141 + MIR SINE MIR 29 154 -108 1536 201 3 11 chr3 2279963 2280247 -225244331 - AluJo SINE Alu -30 282 1 500 352 109 24 chr3 2280805 2281452 -225243126 + L2 LINE L2 2516 3302 -11 180 225 42 42 chr3 2281844 2281915 -225242663 - L2 LINE L2 -2614 700 630 * 334 313 47 0 chr3 2281905 2282033 -225242545 + MIR3 SINE MIR 70 203 -5 21 0 0 0 chr3 2283049 2283070 -225241508 + AT_rich Low_complexity Low_complexity 1 21 0 1469 149 54 144 chr3 2283164 2283628 -225240950 + LTR49 LTR ERV1 4 425 -170 346 226 11 117 chr3 2283635 2283789 -225240789 + LTR48 LTR ERV1 521 614 -30 324 0 0 0 chr3 2283829 2283865 -225240713 + (CA)n Simple_repeat Simple_repeat 2 37 0 2062 112 0 7 chr3 2284728 2285015 -225239563 + AluSp SINE Alu 29 313 0 225 0 0 0 chr3 2286701 2286726 -225237852 + (TG)n Simple_repeat Simple_repeat 2 26 0 493 275 38 26 chr3 2287512 2287702 -225236876 - MIR3 SINE MIR -54 208 6 21 0 0 0 chr3 2289880 2289901 -225234677 + AT_rich Low_complexity Low_complexity 1 21 0 253 278 0 0 chr3 2292372 2292426 -225232152 - L2 LINE L2 -18 3295 3242 1812 178 30 35 chr3 2292427 2292825 -225231753 + MSTD LTR MaLR 1 396 0 3051 260 42 31 chr3 2292827 2293762 -225230816 + MSTD-int LTR MaLR 2 946 -789 886 242 57 0 chr3 2293764 2293975 -225230603 + MSTD LTR MaLR 163 385 -11 447 233 110 75 chr3 2294061 2294499 -225230079 - L1MC5 LINE L1 -20 7941 7489 529 278 53 74 chr3 2294796 2295080 -225229498 - L2 LINE L2 -111 3202 2925 1673 170 48 0 chr3 2295340 2295507 -225229071 - AluSg SINE Alu -2 308 120 405 39 0 0 chr3 2295507 2295558 -225229020 + (TG)n Simple_repeat Simple_repeat 2 52 0 1673 170 48 0 chr3 2295558 2295684 -225228894 - AluSg SINE Alu -190 120 1 1727 134 17 7 chr3 2295768 2296060 -225228518 - AluY SINE Alu -16 295 1 1280 275 59 45 chr3 2296062 2296574 -225228004 - LTR40a LTR ERVL 0 519 1 235 111 0 0 chr3 2296575 2296611 -225227967 + MER5C DNA MER1_type 289 324 0 1611 143 34 20 chr3 2296897 2297191 -225227387 - L1PA16 LINE L1 -3 6163 5866 393 264 62 92 chr3 2297230 2297525 -225227053 - L1M4c LINE L1 -4423 2140 1704 2245 194 21 8 chr3 2297531 2298010 -225226568 + L1MC3 LINE L1 7300 7784 -1 328 196 36 36 chr3 2298249 2298417 -225226161 + (CACAA)n Simple_repeat Simple_repeat 5 172 0 2157 237 49 35 chr3 2298540 2299442 -225225136 - L1M4c LINE L1 -2481 3901 2988 969 223 32 77 chr3 2299429 2299912 -225224666 - L1M4c LINE L1 -3698 2684 2223 * 21 36 0 0 chr3 2301315 2301343 -225223235 + AT_rich Low_complexity Low_complexity 1 28 0 221 200 10 30 chr3 2301969 2302069 -225222509 + A-rich Low_complexity Low_complexity 3 100 0 5474 36 3 1 chr3 2302267 2302929 -225221649 + L1PA5 LINE L1 5491 6153 -1 251 123 31 15 chr3 2303207 2303272 -225221306 + (TA)n Simple_repeat Simple_repeat 1 66 0 1599 158 14 14 chr3 2303272 2303557 -225221021 - AluJo SINE Alu -27 285 1 2348 44 3 0 chr3 2303641 2303935 -225220643 - AluY SINE Alu -16 295 1 2176 87 17 0 chr3 2304072 2304359 -225220219 - AluSc SINE Alu -15 294 3 21 0 0 0 chr3 2304375 2304396 -225220182 + AT_rich Low_complexity Low_complexity 1 21 0 920 67 0 0 chr3 2304398 2304518 -225220060 + L1PB3 LINE L1 6026 6145 -9 621 214 17 79 chr3 2304518 2304696 -225219882 - L1MA9 LINE L1 -3 6288 6122 318 286 211 6 chr3 2305687 2305848 -225218730 + L2 LINE L2 3096 3289 -24 466 322 44 6 chr3 2307185 2307365 -225217213 - MIR SINE MIR -56 206 20 390 260 188 26 chr3 2308668 2308822 -225215756 + MIR SINE MIR 33 211 -51 23 33 0 0 chr3 2308823 2308853 -225215725 + AT_rich Low_complexity Low_complexity 1 30 0 217 325 74 43 chr3 2310588 2310751 -225213827 + MIR SINE MIR 6 173 -89 316 109 0 0 chr3 2311079 2311125 -225213453 + MADE1 DNA Mariner 1 46 -34 602 331 57 75 chr3 2311375 2312461 -225212117 + L2 LINE L2 2228 3304 -9 693 312 44 30 chr3 2313342 2313640 -225210938 + LTR16A LTR ERVL 70 371 -79 4496 64 33 4 chr3 2314072 2315072 -225209506 + MER11A LTR ERVK 1 1266 0 368 240 39 0 chr3 2316040 2316144 -225208434 - MER105 DNA DNA -55 149 42 39 50 0 0 chr3 2321647 2321707 -225202871 + AT_rich Low_complexity Low_complexity 1 60 0 1857 187 107 3 chr3 2321861 2322252 -225202326 - MSTB1 LTR MaLR 0 432 1 205 333 86 0 chr3 2322403 2322496 -225202082 - MIR3 SINE MIR -31 177 77 1823 154 36 3 chr3 2322687 2322993 -225201585 + MER6A DNA MER2_type 1 316 -289 332 177 32 0 chr3 2322986 2323048 -225201530 - MSTB1 LTR MaLR -368 64 1 * 1764 122 7 0 chr3 2323098 2323377 -225201201 + MER6A DNA MER2_type 325 605 0 197 375 100 17 chr3 2323614 2323734 -225200844 - L2 LINE L2 0 3272 3143 1532 270 57 43 chr3 2323770 2324351 -225200227 - MLT1E LTR MaLR -4 589 1 344 115 0 186 chr3 2324354 2324426 -225200152 + MER5C DNA MER1_type 233 317 -7 1755 171 13 3 chr3 2324426 2324725 -225199853 - AluJb SINE Alu -10 302 1 1209 269 59 45 chr3 2324727 2325239 -225199339 - LTR40a LTR ERVL 0 519 1 344 115 0 186 chr3 2325239 2325276 -225199302 + MER5C DNA MER1_type 318 324 0 512 276 43 19 chr3 2326680 2326890 -225197688 + MER58C DNA MER1_type 1 215 0 781 236 113 5 chr3 2327503 2327595 -225196983 - MER46A DNA MER2_type -2496 235 154 1936 107 95 76 chr3 2327595 2328015 -225196563 + MSTA LTR MaLR 1 428 0 781 236 113 5 chr3 2328015 2328134 -225196444 - MER46A DNA MER2_type -2577 154 1 476 221 32 0 chr3 2328678 2328773 -225195805 - MER5A DNA MER1_type 0 189 92 602 234 22 0 chr3 2328773 2328910 -225195668 + MLT2F LTR ERVL 1 140 -523 501 192 10 29 chr3 2328920 2329024 -225195554 + MLT1E3 LTR MaLR 51 152 -472 3475 204 8 8 chr3 2329042 2329666 -225194912 + MLT1A1-int LTR MaLR 1108 1731 -4 780 193 183 63 chr3 2329670 2329955 -225194623 + MLT1A1 LTR MaLR 1 319 -46 321 181 33 45 chr3 2329967 2330085 -225194493 + MLT1E1 LTR MaLR 149 268 -359 299 154 15 0 chr3 2330087 2330152 -225194426 + GA-rich Low_complexity Low_complexity 1 66 0 190 212 30 0 chr3 2330266 2330299 -225194279 - MER5A DNA MER1_type -154 35 2 244 335 48 48 chr3 2330302 2330469 -225194109 + L3 LINE CR1 1308 1474 -103 289 243 78 39 chr3 2330556 2330674 -225193904 - MIR SINE MIR -90 118 2 22 0 0 0 chr3 2331341 2331363 -225193215 + AT_rich Low_complexity Low_complexity 1 22 0 503 347 73 32 chr3 2331999 2332371 -225192207 - MLT1J2 LTR MaLR -14 436 50 259 347 0 0 chr3 2333073 2333148 -225191430 + L3 LINE CR1 1307 1381 -196 243 338 0 13 chr3 2333234 2333311 -225191267 + MIR SINE MIR 75 150 -112 254 177 131 98 chr3 2333562 2333664 -225190914 - MIR3 SINE MIR -42 166 56 30 0 0 0 chr3 2334124 2334154 -225190424 + AT_rich Low_complexity Low_complexity 1 30 0 1993 99 46 3 chr3 2335776 2336060 -225188518 + AluSx SINE Alu 1 296 -16 25 0 0 0 chr3 2336438 2336463 -225188115 + AT_rich Low_complexity Low_complexity 1 25 0 1576 159 77 69 chr3 2336700 2337077 -225187501 + MLT1B LTR MaLR 11 390 0 2599 109 5 11 chr3 2337768 2338145 -225186433 + THE1C LTR MaLR 1 375 0 264 376 30 15 chr3 2338672 2338805 -225185773 - MIR3 SINE MIR -41 167 33 406 273 11 0 chr3 2338928 2339016 -225185562 - L2 LINE L2 -30 3283 3195 271 322 138 0 chr3 2341820 2341972 -225182606 - MIR SINE MIR -3 259 87 7651 17 1 0 chr3 2342442 2344096 -225180482 + L1PA3 LINE L1 4514 6168 0 202 39 0 0 chr3 2344070 2344152 -225180426 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 285 294 0 24 chr3 2344611 2344737 -225179841 + CT-rich Low_complexity Low_complexity 4 126 0 391 381 11 16 chr3 2345107 2345296 -225179282 + L2 LINE L2 2875 3062 -251 1542 201 189 41 chr3 2345386 2345947 -225178631 + LTR48B LTR ERV1 1 644 0 398 336 17 0 chr3 2345952 2346071 -225178507 + L2 LINE L2 3193 3313 0 36 0 0 0 chr3 2346190 2346226 -225178352 + AT_rich Low_complexity Low_complexity 1 36 0 2821 240 54 40 chr3 2346286 2348047 -225176531 - L1ME1 LINE L1 -5 6161 4377 2067 263 86 18 chr3 2348069 2348370 -225176208 - L1ME1 LINE L1 -2905 3241 2962 1406 187 50 25 chr3 2348370 2348653 -225175925 - AluJo SINE Alu -22 290 1 2067 263 86 18 chr3 2348653 2349292 -225175286 - L1ME1 LINE L1 -3184 2962 2237 765 279 68 19 chr3 2349300 2349565 -225175013 + L1MEc LINE L1 37 314 -6082 2109 293 58 23 chr3 2349609 2350730 -225173848 + L1MEc LINE L1 1164 2323 -4073 471 250 0 0 chr3 2350746 2350833 -225173745 - MER7A DNA MER2_type 0 337 251 1112 214 0 0 chr3 2350833 2351039 -225173539 + MER2 DNA MER2_type 1 206 -139 1408 167 38 38 chr3 2351150 2351413 -225173165 - MER7A DNA MER2_type -85 261 1 380 327 75 39 chr3 2351631 2351885 -225172693 + L2 LINE L2 2812 3074 -198 238 369 92 14 chr3 2351932 2352073 -225172505 - MIR SINE MIR -70 192 41 225 229 72 12 chr3 2353203 2353286 -225171292 + L1MC4 LINE L1 6616 6703 -1339 21 0 0 0 chr3 2353332 2353353 -225171225 + AT_rich Low_complexity Low_complexity 1 21 0 1203 282 104 32 chr3 2354659 2355276 -225169302 - MLT2F LTR ERVL -2 661 1 297 128 0 0 chr3 2355496 2355543 -225169035 + (CA)n Simple_repeat Simple_repeat 2 48 0 442 284 115 6 chr3 2355558 2355741 -225168837 + MIR SINE MIR 2 204 -58 27 49 0 0 chr3 2357697 2357738 -225166840 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 2357903 2357933 -225166645 + AT_rich Low_complexity Low_complexity 1 30 0 382 359 12 12 chr3 2358315 2358482 -225166096 - MIR SINE MIR -88 174 8 222 37 0 0 chr3 2359008 2359035 -225165543 + (AATAG)n Simple_repeat Simple_repeat 5 31 0 232 266 76 0 chr3 2359079 2359158 -225165420 + MIR SINE MIR 117 201 -61 379 225 149 64 chr3 2359178 2359402 -225165176 + MLT1H1 LTR MaLR 22 309 -286 1016 234 57 4 chr3 2359554 2359802 -225164776 + L1M4 LINE L1 2 262 -6280 2159 91 0 7 chr3 2359871 2360184 -225164394 + AluSx SINE Alu 1 311 0 818 334 42 42 chr3 2360230 2360781 -225163797 + L1PA6 LINE L1 858 1408 -6166 255 304 49 33 chr3 2360752 2360936 -225163642 + L1PA6 LINE L1 2121 2307 -5267 * 1863 91 0 4 chr3 2361305 2361559 -225163019 + AluY SINE Alu 59 311 0 5455 251 24 21 chr3 2361947 2364279 -225160299 + L1PA6 LINE L1 2231 4524 -3060 837 215 5 46 chr3 2364282 2364501 -225160077 + L1 LINE L1 4589 4798 -1348 6188 83 108 19 chr3 2364501 2365565 -225159013 + MER11A LTR ERVK 1 1266 0 2086 188 68 60 chr3 2365570 2366871 -225157707 + L1PA6 LINE L1 6236 7592 0 4462 239 65 44 chr3 2366903 2368813 -225155765 + L1M4 LINE L1 307 2342 -4302 3371 162 24 7 chr3 2368813 2369405 -225155173 - LTR43 LTR ERV1 0 602 1 4462 239 65 44 chr3 2369405 2370023 -225154555 + L1M4 LINE L1 2342 2946 -3698 2873 227 45 18 chr3 2370010 2370979 -225153599 + L1M4 LINE L1 3250 4245 -2399 * 201 363 70 19 chr3 2371188 2371345 -225153233 - MIR SINE MIR -59 203 39 24 0 0 0 chr3 2371780 2371804 -225152774 + AT_rich Low_complexity Low_complexity 1 24 0 415 252 163 0 chr3 2371928 2372051 -225152527 - L2 LINE L2 0 3313 3171 29 98 0 0 chr3 2372757 2372849 -225151729 + AT_rich Low_complexity Low_complexity 1 92 0 5759 122 2 9 chr3 2374970 2376169 -225148409 - L1PA13 LINE L1 0 6163 4967 4686 181 48 73 chr3 2377660 2378817 -225145761 - MER52A LTR ERV1 0 1755 627 948 258 11 22 chr3 2378983 2379250 -225145328 + L1MCb LINE L1 1 264 -5781 805 243 52 33 chr3 2379254 2379665 -225144913 - L1MCa LINE L1 -1035 5347 4900 * 4354 257 54 17 chr3 2379659 2381278 -225143300 - L1MCa LINE L1 -1885 4497 2819 3903 209 56 15 chr3 2381264 2382307 -225142271 + L1MC3 LINE L1 5161 5400 -746 * 234 195 39 13 chr3 2382314 2382391 -225142187 - L1MCa LINE L1 -4001 2381 2303 337 301 83 74 chr3 2382403 2382699 -225141879 - L1MCa LINE L1 -4230 2333 2032 1662 140 34 17 chr3 2382699 2382992 -225141586 - L1PA16 LINE L1 -3 6163 5866 337 301 83 74 chr3 2382992 2383007 -225141571 - L1MCa LINE L1 -4531 2032 2019 393 293 98 6 chr3 2383151 2383325 -225141253 - L1MCa LINE L1 -4491 1893 1704 2245 194 21 8 chr3 2383331 2383810 -225140768 + L1MC3 LINE L1 7300 7784 -1 1735 290 128 43 chr3 2383851 2384874 -225139704 - L2 LINE L2 -338 2976 1867 482 358 6 6 chr3 2384989 2385168 -225139410 - L2 LINE L2 -1731 1583 1405 587 94 10 0 chr3 2385241 2385337 -225139241 + (TA)n Simple_repeat Simple_repeat 1 97 0 333 0 0 0 chr3 2385336 2385373 -225139205 + (GA)n Simple_repeat Simple_repeat 2 38 0 * 1565 192 4 4 chr3 2385375 2385523 -225139055 - AluSx SINE Alu -36 276 126 279 0 0 0 chr3 2385523 2385554 -225139024 + (TG)n Simple_repeat Simple_repeat 2 32 0 1565 192 4 4 chr3 2385554 2385681 -225138897 - AluSx SINE Alu -185 127 1 198 128 0 0 chr3 2387566 2387605 -225136973 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 231 247 33 73 chr3 2389163 2389313 -225135265 - MIR SINE MIR -2 260 117 28 71 0 0 chr3 2389821 2389877 -225134701 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr3 2389902 2389922 -225134656 + (T)n Simple_repeat Simple_repeat 1 20 0 235 246 66 0 chr3 2390759 2390820 -225133758 + MIR SINE MIR 49 113 -149 326 311 57 31 chr3 2391281 2391474 -225133104 - L3 LINE CR1 -166 1411 1214 289 286 162 0 chr3 2393374 2393479 -225131099 + MIR3 SINE MIR 85 206 -2 1097 294 88 44 chr3 2394662 2395288 -225129290 - L2 LINE L2 -271 3042 2369 237 392 64 8 chr3 2395312 2395437 -225129141 + L2 LINE L2 2817 2948 -366 * 435 299 8 0 chr3 2395434 2395561 -225129017 - L2 LINE L2 -956 2358 2231 338 261 112 25 chr3 2395576 2395737 -225128841 - L2 LINE L2 -1231 2083 1909 25 31 0 0 chr3 2395954 2395986 -225128592 + AT_rich Low_complexity Low_complexity 1 32 0 806 71 8 0 chr3 2396016 2396143 -225128435 + (GGAA)n Simple_repeat Simple_repeat 1 128 0 263 28 28 0 chr3 2396363 2396399 -225128179 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 727 179 0 0 chr3 2396404 2396521 -225128057 - FLAM_C SINE Alu -16 117 1 235 280 85 17 chr3 2397465 2397583 -225126995 + MER117 DNA MER1_type 7 132 -65 21 36 0 0 chr3 2397831 2397859 -225126719 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 2399339 2399361 -225125217 + AT_rich Low_complexity Low_complexity 1 22 0 202 93 23 23 chr3 2399554 2399597 -225124981 + (TA)n Simple_repeat Simple_repeat 1 43 0 396 0 0 0 chr3 2400898 2400942 -225123636 + (TG)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr3 2400941 2400979 -225123599 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 348 165 0 28 chr3 2401241 2401350 -225123228 + (TTA)n Simple_repeat Simple_repeat 1 106 0 187 349 0 24 chr3 2401412 2401495 -225123083 - L2 LINE L2 -2421 893 813 2308 58 0 3 chr3 2402060 2402368 -225122210 + AluY SINE Alu 1 307 -4 280 98 49 0 chr3 2402719 2402780 -225121798 + CT-rich Low_complexity Low_complexity 1 64 0 241 382 38 0 chr3 2403217 2403348 -225121230 + L3b LINE CR1 1327 1462 -121 353 243 99 40 chr3 2404854 2405006 -225119572 + LTR37B LTR ERV1 236 396 -72 1715 179 122 24 chr3 2406989 2407414 -225117164 + MLT1C LTR MaLR 1 467 0 210 280 194 32 chr3 2407613 2407706 -225116872 - L2 LINE L2 -24 3248 3141 918 277 93 34 chr3 2407794 2408115 -225116463 + LTR16C LTR ERVL 149 488 -3 395 333 62 25 chr3 2408173 2408416 -225116162 - L2 LINE L2 -174 3139 2888 272 403 93 5 chr3 2408463 2408679 -225115899 - L2 LINE L2 -529 2785 2551 26 0 0 0 chr3 2409113 2409139 -225115439 + AT_rich Low_complexity Low_complexity 1 26 0 287 265 24 0 chr3 2409734 2409817 -225114761 + (TGAA)n Simple_repeat Simple_repeat 1 85 0 231 320 29 10 chr3 2409874 2409977 -225114601 + MIR SINE MIR 3 107 -155 2943 160 29 60 chr3 2410023 2410655 -225113923 + LTR9 LTR ERV1 1 612 0 204 273 131 10 chr3 2410659 2410758 -225113820 + MIR SINE MIR 147 257 -5 463 237 23 45 chr3 2411644 2411821 -225112757 - Charlie7 DNA MER1_type 0 2612 2440 265 321 161 12 chr3 2411871 2412033 -225112545 + L2 LINE L2 2892 3077 -195 535 314 110 4 chr3 2412464 2412700 -225111878 + MIR SINE MIR 2 262 0 363 274 212 0 chr3 2413600 2413746 -225110832 - MER5B DNA MER1_type 0 178 2 1272 132 5 0 chr3 2414327 2414517 -225110061 + MER41B LTR ERV1 1 191 -444 1380 127 9 27 chr3 2414517 2414648 -225109930 + AluSq SINE Alu 1 128 -185 189 0 0 0 chr3 2414648 2414669 -225109909 + (TA)n Simple_repeat Simple_repeat 2 22 0 1380 127 9 27 chr3 2414669 2414758 -225109820 + AluSq SINE Alu 128 217 -96 2740 156 2 26 chr3 2414793 2415261 -225109317 + MER41B LTR ERV1 179 635 0 2413 118 22 3 chr3 2416768 2417125 -225107453 + THE1B LTR MaLR 1 364 0 312 316 22 7 chr3 2417821 2417960 -225106618 + L1M4 LINE L1 3168 3308 -2838 675 296 121 44 chr3 2418321 2419616 -225104962 + L1M4 LINE L1 3662 5055 -1091 280 313 12 18 chr3 2419815 2419981 -225104597 + (TATATG)n Simple_repeat Simple_repeat 3 167 0 2166 100 7 0 chr3 2420080 2420380 -225104198 + AluY SINE Alu 1 302 -9 198 310 127 35 chr3 2420637 2420779 -225103799 + L2 LINE L2 3150 3304 -9 761 253 42 28 chr3 2420824 2421113 -225103465 - L1M4 LINE L1 -985 5161 4869 1215 194 3 54 chr3 2421223 2421538 -225103040 - AluY SINE Alu 0 311 13 4792 161 17 25 chr3 2421942 2422904 -225101674 + L1P3 LINE L1 10 1069 -5392 6097 94 6 0 chr3 2422904 2423762 -225100816 + L1PA7 LINE L1 5277 6139 -15 419 92 92 6 chr3 2423764 2423927 -225100651 + (TA)n Simple_repeat Simple_repeat 2 178 0 25 31 0 0 chr3 2423927 2423959 -225100619 + AT_rich Low_complexity Low_complexity 1 32 0 455 44 117 0 chr3 2423959 2424096 -225100482 + (TA)n Simple_repeat Simple_repeat 1 153 0 300 228 0 109 chr3 2424097 2424198 -225100380 - L1MC4 LINE L1 -1339 6703 6614 613 130 5 38 chr3 2424212 2424397 -225100181 + (TA)n Simple_repeat Simple_repeat 2 180 0 318 336 0 25 chr3 2424411 2424530 -225100048 - L1MC4 LINE L1 -1339 6703 6588 438 130 28 0 chr3 2424530 2424638 -225099940 + (TA)n Simple_repeat Simple_repeat 1 111 0 10574 128 12 2 chr3 2424738 2426420 -225098158 + L1P3 LINE L1 1269 2968 -3178 7472 86 11 1 chr3 2426398 2427866 -225096712 + L1P3 LINE L1 4287 5764 -390 * 22 0 0 30 chr3 2428149 2428165 -225096413 + AT_rich Low_complexity Low_complexity 1 16 -16 2232 58 3 48 chr3 2428165 2428478 -225096100 - AluY SINE Alu 0 311 13 22 0 0 30 chr3 2428478 2428494 -225096084 + AT_rich Low_complexity Low_complexity 16 32 0 411 269 90 19 chr3 2428597 2428753 -225095825 + MIR SINE MIR 20 186 -76 26 0 0 0 chr3 2429956 2429982 -225094596 + AT_rich Low_complexity Low_complexity 1 26 0 312 172 0 16 chr3 2429989 2430053 -225094525 - L1MD2 LINE L1 -22 6337 6275 4977 212 44 20 chr3 2430061 2431541 -225093037 + L1MB7 LINE L1 3946 5450 -724 2855 203 50 14 chr3 2431545 2432072 -225092506 + L1MB7 LINE L1 5488 6045 -139 183 42 0 0 chr3 2432072 2432096 -225092482 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2855 203 50 14 chr3 2432096 2432234 -225092344 + L1MB7 LINE L1 6045 6177 -7 23 54 0 0 chr3 2432534 2432571 -225092007 + AT_rich Low_complexity Low_complexity 1 37 0 2041 149 0 0 chr3 2432711 2433013 -225091565 + AluSq SINE Alu 1 302 -11 23111 32 7 0 chr3 2435096 2438307 -225086271 - L1P1 LINE L1 -383 5772 2544 3886 245 51 58 chr3 2438604 2440167 -225084411 - L1ME1 LINE L1 -246 5920 4390 1219 186 113 15 chr3 2440167 2440464 -225084114 + AluJb SINE Alu 1 312 0 3886 245 51 58 chr3 2440464 2441192 -225083386 - L1ME1 LINE L1 -1776 4390 3658 180 0 0 0 chr3 2441498 2441518 -225083060 + (CA)n Simple_repeat Simple_repeat 2 21 0 539 151 41 41 chr3 2443255 2443401 -225081177 + Charlie5 DNA MER1_type 2417 2562 -50 1107 30 0 0 chr3 2443452 2443586 -225080992 - L1PA4 LINE L1 -4 6151 6018 22 56 0 0 chr3 2443652 2443688 -225080890 + AT_rich Low_complexity Low_complexity 1 36 0 1503 176 36 39 chr3 2443837 2444144 -225080434 + AluJo SINE Alu 7 312 0 1970 154 81 8 chr3 2444712 2445081 -225079497 - MSTD LTR MaLR 0 396 1 42247 53 4 1 chr3 2445505 2451622 -225072956 + L1PA4 LINE L1 19 6155 0 1605 118 4 4 chr3 2452089 2452326 -225072252 - L1PA15 LINE L1 -3 6162 5926 1685 137 5 2 chr3 2452376 2452643 -225071935 - L1PA15 LINE L1 -237 5929 5654 216 326 119 26 chr3 2452651 2452844 -225071734 + MIR SINE MIR 52 262 0 577 321 33 23 chr3 2454006 2454399 -225070179 + L1MCc LINE L1 1140 1536 -4887 247 286 71 11 chr3 2454392 2454675 -225069903 + L1M4 LINE L1 3106 3405 -2741 * 8568 208 28 19 chr3 2454683 2456759 -225067819 - L1 LINE L1 -1763 5085 2987 4212 120 5 13 chr3 2456759 2457376 -225067202 + LTR9 LTR ERV1 1 612 0 8568 208 28 19 chr3 2457376 2457394 -225067184 - L1 LINE L1 -3861 2987 2971 579 217 1 35 chr3 2457518 2457745 -225066833 - L1 LINE L1 -3896 2952 2735 2487 269 61 71 chr3 2457745 2458829 -225065749 + L1M4 LINE L1 3535 4596 -1550 1233 175 55 7 chr3 2458829 2459138 -225065440 - MER33 DNA MER1_type 0 324 1 2487 269 61 71 chr3 2459138 2459785 -225064793 + L1M4 LINE L1 4596 5248 -898 824 199 70 25 chr3 2459805 2460006 -225064572 - LTR50 LTR ERVL -585 210 1 299 189 0 0 chr3 2460010 2460063 -225064515 + HsTC2 DNA Tc2 1841 1893 -5 1700 174 0 0 chr3 2461675 2461976 -225062602 - AluJb SINE Alu 0 301 1 26 30 0 0 chr3 2462131 2462164 -225062414 + AT_rich Low_complexity Low_complexity 1 33 0 562 302 62 18 chr3 2462442 2462783 -225061795 + HAL1 LINE L1 663 1018 -1489 4077 210 76 49 chr3 2463214 2464974 -225059604 + MER52A LTR ERV1 1 1743 -12 24 53 0 0 chr3 2466214 2466252 -225058326 + AT_rich Low_complexity Low_complexity 1 38 0 316 286 133 41 chr3 2466277 2466378 -225058200 - MIR SINE MIR -15 247 157 1550 222 25 73 chr3 2466378 2466909 -225057669 - MLT1D LTR MaLR 0 505 1 316 286 133 41 chr3 2466909 2467003 -225057575 - MIR SINE MIR -105 157 34 389 307 67 11 chr3 2467494 2467673 -225056905 + MIR SINE MIR 63 251 -11 1721 136 0 0 chr3 2468427 2468670 -225055908 - AluSq SINE Alu -16 297 55 470 181 0 43 chr3 2468790 2468978 -225055600 + (TA)n Simple_repeat Simple_repeat 1 180 0 974 225 36 0 chr3 2469130 2469352 -225055226 - LTR49 LTR ERV1 0 595 366 1211 145 86 23 chr3 2469369 2469590 -225054988 - AluJo SINE Alu -14 298 64 1171 141 20 0 chr3 2469590 2469789 -225054789 - LTR29 LTR ERV1 -230 392 190 396 108 95 14 chr3 2469794 2469868 -225054710 - LTR29 LTR ERV1 -392 230 151 366 271 9 0 chr3 2469884 2469991 -225054587 - MER34 LTR ERV1 -434 108 1 259 310 0 109 chr3 2470291 2470465 -225054113 + MIR SINE MIR 37 191 -71 1478 290 92 56 chr3 2470929 2471913 -225052665 - LTR28 LTR ERV1 0 1020 1 2446 65 3 7 chr3 2471963 2472272 -225052306 + AluY SINE Alu 1 308 -3 23 33 0 0 chr3 2472412 2472442 -225052136 + AT_rich Low_complexity Low_complexity 1 30 0 3491 130 14 40 chr3 2472481 2473106 -225051472 + MER4B LTR ERV1 2 610 0 1994 134 0 26 chr3 2473202 2473508 -225051070 - AluSq SINE Alu -15 298 1 275 59 0 0 chr3 2474229 2474263 -225050315 - MER21B LTR ERV1 -158 705 672 604 216 35 0 chr3 2474297 2474413 -225050165 - MER101B LTR ERV1 -450 120 1 386 234 79 106 chr3 2474479 2474782 -225049796 + L1ME4a LINE L1 5764 6058 -63 2150 106 3 3 chr3 2474854 2475138 -225049440 + AluSq SINE Alu 3 286 -27 1405 188 65 53 chr3 2475368 2475695 -225048883 - MER21B LTR ERV1 -1 862 529 2520 205 43 76 chr3 2475695 2475721 -225048857 + MER72 LTR ERV1 1 26 -696 2531 59 0 3 chr3 2475721 2476026 -225048552 + AluY SINE Alu 1 304 -7 2520 205 43 76 chr3 2476026 2476746 -225047832 + MER72 LTR ERV1 26 722 0 1405 188 65 53 chr3 2476746 2476774 -225047804 - MER21B LTR ERV1 -334 529 503 1137 163 0 100 chr3 2476782 2477033 -225047545 - MER21B LTR ERV1 -637 226 1 23 54 0 0 chr3 2477438 2477475 -225047103 + AT_rich Low_complexity Low_complexity 1 37 0 387 60 0 0 chr3 2478307 2478357 -225046221 + (GGGAA)n Simple_repeat Simple_repeat 1 50 0 332 349 48 26 chr3 2478781 2479010 -225045568 + L2 LINE L2 3077 3310 -3 562 286 65 35 chr3 2480390 2480589 -225043989 - MIR SINE MIR 0 262 58 220 304 0 18 chr3 2481033 2481089 -225043489 - L2 LINE L2 -97 3175 3121 207 0 0 0 chr3 2481134 2481157 -225043421 + (TG)n Simple_repeat Simple_repeat 1 23 0 515 344 29 16 chr3 2482178 2482422 -225042156 - MIR SINE MIR -10 252 6 1271 165 36 14 chr3 2482520 2482853 -225041725 - MER88 LTR ERVL 0 464 43 881 228 0 0 chr3 2482868 2483026 -225041552 - AluJb SINE Alu -18 294 137 276 204 41 10 chr3 2483061 2483159 -225041419 + (TA)n Simple_repeat Simple_repeat 1 101 0 947 286 34 67 chr3 2483536 2483907 -225040671 - HAL1b LINE L1 -450 898 549 1928 128 6 39 chr3 2483907 2484219 -225040359 - AluSx SINE Alu -10 302 1 947 286 34 67 chr3 2484219 2484400 -225040178 - HAL1b LINE L1 -799 549 364 27 0 0 0 chr3 2484414 2484441 -225040137 + AT_rich Low_complexity Low_complexity 1 27 0 1901 181 52 11 chr3 2484563 2485027 -225039551 + L1P LINE L1 1246 1728 -4418 887 83 0 8 chr3 2485009 2485142 -225039436 + L1P LINE L1 2380 2511 -3635 * 16457 37 1 1 chr3 2485136 2487172 -225037406 - L1PA2 LINE L1 -2134 4012 1978 11554 29 0 1 chr3 2487172 2489348 -225035230 + L1PA2 LINE L1 4001 6155 0 14901 99 14 6 chr3 2489350 2491544 -225033034 + L1P LINE L1 2500 4709 -1437 528 304 94 24 chr3 2491629 2492010 -225032568 - L1MC/D LINE L1 -2084 5724 5317 366 297 82 15 chr3 2492092 2492287 -225032291 - L1MC/D LINE L1 -917 5229 5022 369 268 41 24 chr3 2492287 2492410 -225032168 + MIR SINE MIR 82 206 -56 915 194 23 23 chr3 2492423 2492598 -225031980 + AluJo SINE Alu 1 175 -137 2201 74 0 0 chr3 2494123 2494440 -225030138 - AluY SINE Alu 0 317 1 2272 83 27 10 chr3 2494535 2494835 -225029743 + AluSx SINE Alu 1 305 -7 3894 150 21 3 chr3 2495293 2495966 -225028612 + MER6 DNA MER2_type 181 865 0 908 208 69 12 chr3 2495971 2496097 -225028481 - L1ME LINE L1 -349 5817 5700 2131 128 0 0 chr3 2496097 2496395 -225028183 - AluSq SINE Alu -15 298 1 908 208 69 12 chr3 2496395 2496513 -225028065 - L1ME LINE L1 -466 5700 5559 * 1948 147 0 3 chr3 2496497 2496811 -225027767 + L1P LINE L1 5 317 -5829 608 241 6 6 chr3 2498248 2498414 -225026164 - L1 LINE L1 -1222 4924 4759 1356 130 43 9 chr3 2498416 2498646 -225025932 - MSTA LTR MaLR 0 428 191 1994 121 7 7 chr3 2498646 2498944 -225025634 - AluSq SINE Alu -15 298 1 2390 118 25 3 chr3 2500923 2501279 -225023299 + THE1B LTR MaLR 1 364 0 264 322 138 0 chr3 2501812 2501964 -225022614 - MIR SINE MIR -3 259 87 3243 69 0 4 chr3 2502415 2502867 -225021711 + L1P LINE L1 4497 4946 -1200 503 152 11 22 chr3 2502969 2503061 -225021517 - MER77 LTR ERV1 -148 457 367 405 0 0 0 chr3 2503093 2503138 -225021440 + (TG)n Simple_repeat Simple_repeat 2 46 0 398 154 154 0 chr3 2503149 2503259 -225021319 - L1MC4a LINE L1 -1382 6426 6300 421 226 168 13 chr3 2503344 2503499 -225021079 - L1MC3 LINE L1 -1521 6264 6086 1908 145 16 3 chr3 2503500 2503804 -225020774 + AluJb SINE Alu 1 308 -4 338 206 0 0 chr3 2503807 2503875 -225020703 + L1MC4 LINE L1 6636 6703 -1339 577 225 85 84 chr3 2504058 2504449 -225020129 - MSTB2 LTR MaLR -13 444 1 220 336 82 55 chr3 2504462 2504572 -225020006 - MIR3 SINE MIR -93 115 3 6776 67 8 5 chr3 2504725 2506388 -225018190 - L1PA7 LINE L1 -16 6138 4475 211 197 45 0 chr3 2511709 2511775 -225012803 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr3 2512284 2512309 -225012269 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 2516844 2516866 -225007712 + AT_rich Low_complexity Low_complexity 1 22 0 192 111 0 0 chr3 2516945 2516981 -225007597 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr3 2517070 2517096 -225007482 + AT_rich Low_complexity Low_complexity 1 26 0 716 81 52 17 chr3 2517148 2517320 -225007258 + (CAAA)n Simple_repeat Simple_repeat 2 179 0 216 0 0 0 chr3 2517738 2517762 -225006816 + (T)n Simple_repeat Simple_repeat 1 24 0 183 42 0 0 chr3 2518398 2518422 -225006156 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 4456 143 191 16 chr3 2523393 2524273 -225000305 + L1PBa LINE L1 772 1862 -5001 2363 90 0 3 chr3 2524273 2524573 -225000005 + AluY SINE Alu 1 299 -12 4456 143 191 16 chr3 2524573 2524730 -224999848 + L1PBa LINE L1 1862 1990 -4873 246 192 0 0 chr3 2526737 2526789 -224997789 + A-rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 2526933 2526956 -224997622 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 2528516 2528538 -224996040 + AT_rich Low_complexity Low_complexity 1 22 0 322 297 0 0 chr3 2532718 2532809 -224991769 + L1MC4 LINE L1 6613 6703 -1339 198 0 0 0 chr3 2532862 2532884 -224991694 + (TA)n Simple_repeat Simple_repeat 2 23 0 811 84 0 19 chr3 2634256 2634363 -224890215 + FLAM_A SINE Alu 22 126 -16 3298 117 10 2 chr3 2634408 2634906 -224889672 + L1PB3 LINE L1 5650 6151 -3 212 342 13 0 chr3 2635245 2635324 -224889254 + MIR SINE MIR 70 149 -59 1894 128 16 26 chr3 2636145 2636451 -224888127 + AluSx SINE Alu 1 303 -9 533 218 247 6 chr3 2636451 2636621 -224887957 + MIR SINE MIR 51 261 -1 352 278 32 24 chr3 2637076 2637202 -224887376 + MIR SINE MIR 20 146 -116 279 284 0 0 chr3 2639014 2639088 -224885490 + G-rich Low_complexity Low_complexity 1 74 0 3359 134 107 6 chr3 2640567 2641201 -224883377 + Tigger1 DNA MER2_type 63 760 -1658 * 7667 128 30 8 chr3 2641192 2642504 -224882074 + Tigger1 DNA MER2_type 1079 2418 0 2365 123 5 32 chr3 2642833 2643207 -224881371 + THE1B LTR MaLR 1 364 0 1742 190 7 3 chr3 2646718 2647013 -224877565 - AluSx SINE Alu -16 296 1 28 0 0 0 chr3 2647061 2647089 -224877489 + AT_rich Low_complexity Low_complexity 1 28 0 372 363 57 6 chr3 2647197 2647354 -224877224 + MIR3 SINE MIR 20 184 -24 2162 112 3 0 chr3 2647542 2647837 -224876741 - AluSp SINE Alu -17 296 1 276 87 0 43 chr3 2648449 2648495 -224876083 - L2 LINE L2 -75 3238 3195 520 281 67 12 chr3 2649207 2649371 -224875207 + MER5B DNA MER1_type 6 178 0 2093 121 0 0 chr3 2649785 2650090 -224874488 - AluSx SINE Alu 0 305 1 2220 112 0 13 chr3 2651091 2651394 -224873184 + AluSx SINE Alu 1 299 -13 2180 187 74 71 chr3 2652182 2652777 -224871801 - L1MC3 LINE L1 0 7785 7189 291 262 24 12 chr3 2652778 2652862 -224871716 - MLT1F1 LTR MaLR -443 124 40 298 163 0 0 chr3 2652866 2652915 -224871663 - L1MC3 LINE L1 -692 7093 7045 315 365 0 0 chr3 2652915 2653030 -224871548 + MIR3 SINE MIR 71 185 -23 2289 112 0 0 chr3 2653186 2653489 -224871089 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 2653517 2653540 -224871038 + AT_rich Low_complexity Low_complexity 1 23 0 1002 146 189 5 chr3 2653703 2653888 -224870690 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 2654731 2654769 -224869809 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 376 303 141 15 chr3 2655787 2655985 -224868593 + MIR SINE MIR 40 262 0 186 293 35 0 chr3 2656692 2656750 -224867828 - MIR3 SINE MIR -37 171 112 222 338 13 0 chr3 2657479 2657556 -224867022 + MIR SINE MIR 68 145 -63 232 222 123 0 chr3 2658457 2658538 -224866040 - MIR3 SINE MIR -16 192 102 202 296 14 28 chr3 2658727 2658798 -224865780 - MIR SINE MIR -119 89 20 285 217 0 17 chr3 2659423 2659483 -224865095 + MER91 DNA MER1_type 2 60 -80 1881 72 103 4 chr3 2659837 2660099 -224864479 - AluSc SINE Alu -17 292 5 212 315 23 62 chr3 2660170 2660299 -224864279 + MIR SINE MIR 2 133 -75 22 0 0 0 chr3 2660334 2660356 -224864222 + AT_rich Low_complexity Low_complexity 1 22 0 2542 53 0 22 chr3 2660747 2661065 -224863513 - AluY SINE Alu 0 311 1 314 245 96 11 chr3 2661347 2661441 -224863137 - MER69A DNA AcHobo 0 177 76 1798 191 68 28 chr3 2661441 2661642 -224862936 + L1MD2 LINE L1 5944 6135 -224 2268 107 3 0 chr3 2661642 2661952 -224862626 + AluSx SINE Alu 1 311 -1 1798 191 68 28 chr3 2661952 2662149 -224862429 + L1MD2 LINE L1 6135 6358 -1 248 307 44 18 chr3 2662154 2662268 -224862310 - MER69A DNA AcHobo -60 117 1 253 348 38 52 chr3 2663093 2663303 -224861275 + L2 LINE L2 2564 2770 -544 545 268 87 70 chr3 2663495 2663794 -224860784 + MER5C DNA MER1_type 21 324 0 530 241 195 0 chr3 2664070 2664244 -224860334 + MIR SINE MIR 49 256 -6 3547 152 48 2 chr3 2664299 2664905 -224859673 - L1MB3 LINE L1 0 6183 5550 2130 116 3 16 chr3 2664906 2665216 -224859362 - AluSx SINE Alu -3 309 4 236 250 62 38 chr3 2666010 2666090 -224858488 + MIR SINE MIR 46 127 -81 2308 97 0 3 chr3 2666194 2666504 -224858074 + AluY SINE Alu 1 309 -2 206 310 113 0 chr3 2666639 2666710 -224857868 - MIR SINE MIR -155 107 29 760 222 102 9 chr3 2667059 2667275 -224857303 - MIR SINE MIR -13 249 14 981 195 20 20 chr3 2667715 2667915 -224856663 + MER20 DNA MER1_type 1 200 -19 210 333 0 43 chr3 2667974 2668043 -224856535 + L3 LINE CR1 1508 1573 -4 2003 140 10 0 chr3 2668618 2668911 -224855667 - AluSx SINE Alu -16 296 1 339 314 58 19 chr3 2669107 2669263 -224855315 + MIR3 SINE MIR 39 200 -8 939 117 7 15 chr3 2669421 2669558 -224855020 + AluJb SINE Alu 1 136 -176 1900 167 0 0 chr3 2669558 2669846 -224854732 + AluJb SINE Alu 6 293 -19 261 0 0 0 chr3 2669865 2669894 -224854684 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 100 7 0 chr3 2669896 2670176 -224854402 - AluSx SINE Alu -30 282 1 257 109 455 0 chr3 2670627 2670682 -224853896 - MADE1 DNA Mariner 0 80 1 1856 145 35 0 chr3 2671071 2671187 -224853391 + AluSx SINE Alu 1 112 -200 387 0 0 0 chr3 2671187 2671230 -224853348 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1856 145 35 0 chr3 2671230 2671402 -224853176 + AluSx SINE Alu 112 299 -13 424 246 53 18 chr3 2672426 2672540 -224852038 - MIR3 SINE MIR -77 131 14 1263 124 0 43 chr3 2673203 2673389 -224851189 - AluSx SINE Alu -134 178 1 685 224 39 86 chr3 2673520 2673775 -224850803 - MER112 DNA MER1_type -12 248 6 299 269 86 30 chr3 2673862 2674096 -224850482 - L1ME4a LINE L1 -2 6119 5873 1029 186 9 24 chr3 2674190 2674258 -224850320 - MER3 DNA MER1_type -1 208 141 1936 143 7 7 chr3 2674258 2674545 -224850033 - AluSx SINE Alu -25 287 1 1029 186 9 24 chr3 2674545 2674686 -224849892 - MER3 DNA MER1_type -68 141 2 248 385 57 0 chr3 2676270 2676392 -224848186 - MIR SINE MIR -113 149 21 213 39 0 0 chr3 2677588 2677614 -224846964 + (CAA)n Simple_repeat Simple_repeat 2 27 0 276 284 0 68 chr3 2678800 2678888 -224845690 + L2 LINE L2 3168 3249 -23 2240 100 0 3 chr3 2681684 2681973 -224842605 - AluSx SINE Alu -24 288 1 209 173 154 19 chr3 2681993 2682045 -224842533 - L2 LINE L2 -3 3310 3252 185 0 0 39 chr3 2682132 2682158 -224842420 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2097 109 10 7 chr3 2682263 2682557 -224842021 - AluSq SINE Alu -18 295 1 376 249 115 91 chr3 2682804 2682998 -224841580 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 2682998 2683279 -224841299 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 2683279 2683337 -224841241 + L1ME4a LINE L1 5834 5889 -232 277 180 16 141 chr3 2683425 2683553 -224841025 - MLT1H LTR MaLR 0 549 438 1148 198 105 0 chr3 2683974 2684232 -224840346 + L1MB8 LINE L1 4789 5073 -1073 1675 112 0 16 chr3 2684240 2684482 -224840096 - AluSg/x SINE Alu -2 308 71 611 264 7 14 chr3 2684666 2684835 -224839743 + AluY SINE Alu 134 301 0 641 133 23 8 chr3 2684835 2684963 -224839615 + L1MB8 LINE L1 5187 5316 -830 833 199 6 0 chr3 2684965 2685121 -224839457 + FRAM SINE Alu 1 40 0 4457 183 19 25 chr3 2685124 2686004 -224838574 + L1MB8 LINE L1 5304 6178 0 2004 114 0 24 chr3 2686291 2686600 -224837978 - AluSx SINE Alu 0 304 3 216 144 22 0 chr3 2686715 2686761 -224837817 - MIR SINE MIR -62 146 99 480 62 37 0 chr3 2687033 2687114 -224837464 + (TA)n Simple_repeat Simple_repeat 1 84 0 1835 158 18 0 chr3 2687124 2687408 -224837170 - AluJo SINE Alu -23 289 1 858 168 0 0 chr3 2688269 2688394 -224836184 - AluJb SINE Alu -187 125 1 1501 195 3 36 chr3 2688438 2688746 -224835832 - AluJo SINE Alu -14 298 1 2266 104 0 0 chr3 2688969 2689267 -224835311 + AluSx SINE Alu 12 309 -3 670 178 8 0 chr3 2689476 2689594 -224834984 + MLT1D LTR MaLR 387 505 0 546 278 131 0 chr3 2689934 2690110 -224834468 + MIR SINE MIR 32 230 -32 180 77 0 0 chr3 2690185 2690211 -224834367 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1738 139 58 41 chr3 2690550 2690845 -224833733 - AluSx SINE Alu -12 300 1 2812 231 45 80 chr3 2691311 2691360 -224833218 - L1ME1 LINE L1 -6 6160 6111 1953 143 153 42 chr3 2691360 2691671 -224832907 + MSTA LTR MaLR 1 365 -63 2437 52 0 29 chr3 2691671 2691977 -224832601 - AluY SINE Alu -14 297 1 1953 143 153 42 chr3 2691977 2692050 -224832528 + MSTA LTR MaLR 365 428 0 2812 231 45 80 chr3 2692050 2692233 -224832345 - L1ME1 LINE L1 -55 6111 5923 2187 113 0 0 chr3 2692233 2692526 -224832052 - AluSg SINE Alu -17 293 1 2812 231 45 80 chr3 2692526 2693029 -224831549 - L1ME1 LINE L1 -243 5923 5404 2046 131 7 0 chr3 2693029 2693320 -224831258 + AluSg SINE Alu 1 293 -17 2812 231 45 80 chr3 2693320 2693382 -224831196 - L1ME1 LINE L1 -762 5404 5411 1522 193 14 14 chr3 2693382 2693667 -224830911 - AluJb SINE Alu -27 285 1 2812 231 45 80 chr3 2693667 2693725 -224830853 - L1ME1 LINE L1 -754 5412 5353 3029 249 57 23 chr3 2693769 2694799 -224829779 - L1ME1 LINE L1 -1790 4356 3292 308 64 21 0 chr3 2694827 2694874 -224829704 + (TC)n Simple_repeat Simple_repeat 1 48 0 1022 210 189 7 chr3 2694874 2694950 -224829628 - MER2 DNA MER2_type 0 344 283 2314 92 0 0 chr3 2694950 2695245 -224829333 + AluSx SINE Alu 5 299 -13 1022 210 189 7 chr3 2695245 2695459 -224829119 - MER2 DNA MER2_type -61 283 1 1761 97 45 0 chr3 2696047 2696315 -224828263 + AluSq SINE Alu 25 304 -9 4246 91 21 21 chr3 2697923 2698382 -224826196 - PABL_A LTR ERV1 -9 651 190 2343 93 0 7 chr3 2698382 2698692 -224825886 + AluSx SINE Alu 1 308 -4 4246 91 21 21 chr3 2698692 2698883 -224825695 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 2699354 2699377 -224825201 + AT_rich Low_complexity Low_complexity 1 23 0 583 99 148 10 chr3 2699382 2699483 -224825095 - FLAM_C SINE Alu -24 119 5 860 131 77 0 chr3 2699532 2699662 -224824916 + FRAM SINE Alu 20 159 -17 293 367 17 0 chr3 2699851 2699971 -224824607 - MIR SINE MIR -133 129 8 534 236 48 36 chr3 2700259 2700424 -224824154 + MER5B DNA MER1_type 11 177 -1 688 129 103 189 chr3 2700651 2700866 -224823712 - MER33 DNA MER1_type -2265 320 145 1752 171 20 3 chr3 2700866 2701159 -224823419 + AluJb SINE Alu 1 298 -14 688 129 103 189 chr3 2701159 2701293 -224823285 - MER33 DNA MER1_type -2440 145 1 7603 15 0 0 chr3 2701529 2702762 -224821816 + L1HS LINE L1 4923 6155 0 1683 161 17 30 chr3 2703334 2703633 -224820945 + AluJb SINE Alu 1 295 -17 474 204 160 18 chr3 2705018 2705243 -224819335 - MER112 DNA MER1_type 0 260 4 1474 206 109 43 chr3 2705850 2706356 -224818222 - MER90 LTR ERV1 -6 608 70 2125 141 13 0 chr3 2706709 2707015 -224817563 - AluJo SINE Alu -2 310 1 212 292 79 22 chr3 2707146 2707235 -224817343 + MIR3 SINE MIR 90 183 -25 1643 249 190 30 chr3 2707755 2708582 -224815996 - HAL1 LINE L1 -209 2298 1340 383 306 89 0 chr3 2708586 2708867 -224815711 - HAL1 LINE L1 -1218 1289 984 432 288 113 19 chr3 2709054 2709266 -224815312 - HAL1 LINE L1 -1842 665 434 206 342 57 19 chr3 2709608 2709766 -224814812 + L2 LINE L2 2917 3080 -192 1877 154 3 13 chr3 2709783 2710094 -224814484 - AluJb SINE Alu -4 308 1 2189 71 39 3 chr3 2710866 2711149 -224813429 + AluY SINE Alu 1 293 -18 487 227 302 0 chr3 2711151 2711323 -224813255 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 2711367 2711423 -224813155 + (CA)n Simple_repeat Simple_repeat 1 56 0 427 315 34 0 chr3 2711470 2711616 -224812962 - MER117 DNA MER1_type -36 161 11 388 352 49 6 chr3 2711918 2712080 -224812498 - MIR SINE MIR -13 249 81 714 254 215 0 chr3 2712348 2712553 -224812025 - MIR SINE MIR -8 254 6 462 306 0 0 chr3 2713272 2713383 -224811195 + MER81 DNA DNA 4 114 0 240 274 140 18 chr3 2713555 2713661 -224810917 - L1MC/D LINE L1 -2273 5535 5401 1682 152 72 4 chr3 2713661 2713938 -224810640 + AluSx SINE Alu 1 296 -16 240 274 140 18 chr3 2713938 2713995 -224810583 - L1MC/D LINE L1 -2407 5401 5352 265 368 60 8 chr3 2715062 2715179 -224809399 - L2 LINE L2 0 3313 3191 2430 69 3 0 chr3 2715289 2715593 -224808985 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 2716262 2716386 -224808192 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 2716896 2717096 -224807482 + MIR SINE MIR 31 253 -9 1055 130 0 34 chr3 2722217 2722394 -224802184 - AluSg/x SINE Alu -15 294 124 256 267 67 33 chr3 2725547 2725637 -224798941 - MIR SINE MIR -157 105 13 1890 151 18 0 chr3 2725877 2726162 -224798416 - AluJb SINE Alu -14 298 9 235 254 211 7 chr3 2727058 2727200 -224797378 + L1MC/D LINE L1 4531 4701 -1445 275 282 57 0 chr3 2727237 2727361 -224797217 + L1MC/D LINE L1 5695 5825 -1983 245 295 105 11 chr3 2727948 2728043 -224796535 + L3 LINE CR1 1196 1299 -278 1688 188 40 3 chr3 2728134 2728459 -224796119 - MER1B DNA MER1_type 0 337 1 563 280 13 13 chr3 2728712 2728862 -224795716 - MIR SINE MIR -79 183 34 360 232 36 94 chr3 2728866 2728895 -224795683 - L2 LINE L2 -2 3311 3282 2557 98 30 6 chr3 2728895 2729261 -224795317 + THE1C LTR MaLR 1 375 0 360 232 36 94 chr3 2729261 2729369 -224795209 - L2 LINE L2 -31 3282 3182 26 0 0 0 chr3 2730430 2730456 -224794122 + AT_rich Low_complexity Low_complexity 1 26 0 547 300 143 29 chr3 2730727 2731271 -224793307 + L1ME LINE L1 4633 5238 -908 348 236 183 21 chr3 2731307 2731498 -224793080 + L1ME LINE L1 5296 5517 -2291 1688 80 0 0 chr3 2731540 2731753 -224792825 - AluSg SINE Alu -97 213 1 292 211 273 19 chr3 2731888 2732049 -224792529 + L1MC4a LINE L1 5748 5949 -1859 22 0 0 0 chr3 2733430 2733452 -224791126 + AT_rich Low_complexity Low_complexity 1 22 0 1805 164 7 20 chr3 2733452 2733750 -224790828 - AluJb SINE Alu -18 294 1 1095 267 70 26 chr3 2733779 2734344 -224790234 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 2734377 2734405 -224790173 + AT_rich Low_complexity Low_complexity 1 28 0 199 298 0 0 chr3 2734482 2734539 -224790039 + L2 LINE L2 3255 3311 -2 305 195 26 26 chr3 2734554 2734631 -224789947 + MLT1L LTR MaLR 3 79 -536 365 303 48 0 chr3 2735237 2735402 -224789176 + Charlie8 DNA MER1_type 85 257 -2160 468 0 0 0 chr3 2735416 2735468 -224789110 + (TG)n Simple_repeat Simple_repeat 2 53 0 210 296 59 89 chr3 2736649 2736784 -224787794 + MIR SINE MIR 17 147 -61 626 242 65 107 chr3 2736793 2737148 -224787430 - MLT1I LTR MaLR -7 402 63 201 237 0 0 chr3 2737240 2737299 -224787279 + (TA)n Simple_repeat Simple_repeat 1 59 0 300 290 30 53 chr3 2738027 2738158 -224786420 - L2 LINE L2 -4 3309 3182 293 235 43 17 chr3 2738690 2738805 -224785773 + L1ME LINE L1 5630 5747 -374 330 267 0 11 chr3 2738814 2738904 -224785674 + LTR67 LTR ERVL 460 548 -9 459 63 0 0 chr3 2738904 2738967 -224785611 + (CA)n Simple_repeat Simple_repeat 2 64 0 31 76 0 0 chr3 2739217 2739283 -224785295 + AT_rich Low_complexity Low_complexity 1 66 0 285 296 61 17 chr3 2739635 2739750 -224784828 - MIR SINE MIR -6 256 137 22 35 0 0 chr3 2740228 2740257 -224784321 + AT_rich Low_complexity Low_complexity 1 29 0 811 211 80 0 chr3 2741837 2742012 -224782566 + MLT1D LTR MaLR 4 192 -313 1256 191 17 39 chr3 2742012 2742243 -224782335 + AluJo SINE Alu 1 226 -86 648 222 63 16 chr3 2743150 2743339 -224781239 + MIR SINE MIR 44 241 -21 961 183 121 92 chr3 2743357 2743874 -224780704 + LTR36 LTR ERV1 1 611 0 730 236 220 0 chr3 2744036 2744494 -224780084 + LTR50 LTR ERVL 140 795 0 960 287 89 2 chr3 2744571 2744965 -224779613 + L1ME3A LINE L1 5291 5718 -452 422 78 16 0 chr3 2744965 2745029 -224779549 + MER41B LTR ERV1 481 545 -90 1061 242 66 44 chr3 2745075 2745503 -224779075 + L1ME3A LINE L1 5730 6162 -8 2221 129 3 0 chr3 2745602 2745912 -224778666 - AluSq SINE Alu -2 311 1 209 373 15 0 chr3 2746079 2746146 -224778432 + L2 LINE L2 3198 3265 -7 199 208 260 39 chr3 2746515 2746592 -224777986 + MIR3 SINE MIR 63 156 -52 387 256 53 0 chr3 2746648 2746781 -224777797 - MER117 DNA MER1_type -56 141 2 231 291 0 0 chr3 2746783 2746838 -224777740 + MIR3 SINE MIR 154 208 0 333 274 183 7 chr3 2747745 2747898 -224776680 + MIR3 SINE MIR 15 194 -14 186 283 170 28 chr3 2748274 2748380 -224776198 + MIR3 SINE MIR 84 204 -4 220 324 14 0 chr3 2748625 2748699 -224775879 + (TA)n Simple_repeat Simple_repeat 1 75 0 1889 197 16 101 chr3 2748879 2749426 -224775152 - MLT1D LTR MaLR -2 503 3 360 364 23 6 chr3 2749518 2749694 -224774884 - MIR3 SINE MIR -13 195 17 216 171 0 0 chr3 2750069 2750104 -224774474 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 216 210 65 32 chr3 2750132 2750194 -224774384 - L2 LINE L2 -42 3230 3167 298 347 200 7 chr3 2750214 2750364 -224774214 + MER5A DNA MER1_type 1 179 -10 2734 103 8 5 chr3 2751261 2751648 -224772930 - L1PB1 LINE L1 -1 6150 5763 23 0 0 0 chr3 2751707 2751730 -224772848 + AT_rich Low_complexity Low_complexity 1 23 0 438 333 0 0 chr3 2751738 2751849 -224772729 - L2 LINE L2 -5 3267 3157 959 138 0 7 chr3 2752968 2753113 -224771465 + AluSg/x SINE Alu 136 279 -30 395 259 114 32 chr3 2753508 2753666 -224770912 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 2753832 2754033 -224770545 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 2754033 2754350 -224770228 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 2754350 2754706 -224769872 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 2755007 2755189 -224769389 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 2755274 2755585 -224768993 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 2755561 2755603 -224768975 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 2756432 2756653 -224767925 - MIR SINE MIR -5 257 18 2255 99 3 10 chr3 2756828 2757142 -224767436 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 2757663 2757863 -224766715 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 2758109 2758255 -224766323 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 2758256 2758343 -224766235 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 2758524 2758681 -224765897 - MIR SINE MIR 0 262 104 5415 129 16 5 chr3 2759735 2760551 -224764027 + L1MC1 LINE L1 5509 6333 0 542 239 43 111 chr3 2760821 2760963 -224763615 + Charlie8 DNA MER1_type 2 123 -218 2145 109 0 50 chr3 2760963 2761284 -224763294 - AluSx SINE Alu -3 309 5 542 239 43 111 chr3 2761284 2761375 -224763203 + Charlie8 DNA MER1_type 123 219 -122 272 375 13 33 chr3 2761678 2761830 -224762748 + MIR3 SINE MIR 21 169 -39 345 232 72 65 chr3 2761886 2762024 -224762554 - MER103 DNA DNA -18 148 10 624 317 176 32 chr3 2763130 2763471 -224761107 + L3 LINE CR1 751 1140 -437 2433 121 22 25 chr3 2763474 2763839 -224760739 - THE1B LTR MaLR 0 364 1 189 288 225 0 chr3 2763931 2764011 -224760567 + L3 LINE CR1 1188 1285 -292 1274 177 42 103 chr3 2764083 2764394 -224760184 - AluJo SINE Alu -20 292 1 1721 170 10 10 chr3 2764409 2764709 -224759869 - AluJo SINE Alu -12 300 1 1928 147 3 13 chr3 2765643 2765956 -224758622 + AluJb SINE Alu 1 310 -2 254 336 70 31 chr3 2766191 2766319 -224758259 - L2 LINE L2 -8 3264 3132 2351 132 33 33 chr3 2767091 2767385 -224757193 + THE1B LTR MaLR 1 297 -67 1994 125 3 14 chr3 2767385 2767682 -224756896 - AluSx SINE Alu -18 294 1 2351 132 33 33 chr3 2767682 2767751 -224756827 + THE1B LTR MaLR 296 364 0 4922 172 27 34 chr3 2769275 2770661 -224753917 - L1MB3 LINE L1 -2 6181 4810 193 276 0 52 chr3 2770771 2770829 -224753749 - MIR3 SINE MIR -146 62 8 439 239 92 23 chr3 2771000 2771130 -224753448 + MLT1J2 LTR MaLR 37 175 -275 349 289 47 57 chr3 2771469 2771680 -224752898 - MLT1I LTR MaLR -26 383 175 2055 109 35 109 chr3 2771680 2772085 -224752493 - THE1C LTR MaLR 0 375 1 747 290 136 18 chr3 2772094 2772535 -224752043 + L2 LINE L2 2821 3313 0 407 300 110 11 chr3 2773853 2774054 -224750524 - MIR SINE MIR -25 237 19 2249 185 41 30 chr3 2775417 2775881 -224748697 + MLT2B1 LTR ERVL 1 469 -51 273 196 21 93 chr3 2775920 2776017 -224748561 - L1MC4 LINE L1 -1339 6703 6614 * 276 170 0 130 chr3 2775931 2776031 -224748547 + L1MC4 LINE L1 6617 6703 -1339 213 175 0 0 chr3 2776031 2776071 -224748507 + (TATG)n Simple_repeat Simple_repeat 4 43 0 422 16 0 109 chr3 2776074 2776138 -224748440 + MLT2B1 LTR ERVL 464 520 0 690 297 72 43 chr3 2776231 2776671 -224747907 - Charlie8 DNA MER1_type -2145 272 1 21 0 0 0 chr3 2777155 2777176 -224747402 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr3 2778497 2778524 -224746054 + (TG)n Simple_repeat Simple_repeat 1 27 0 1291 243 14 3 chr3 2778573 2778857 -224745721 - AluJb SINE Alu -15 287 1 27 49 0 0 chr3 2778857 2778898 -224745680 + AT_rich Low_complexity Low_complexity 1 41 0 798 188 17 104 chr3 2779316 2779556 -224745022 - MER20 DNA MER1_type 0 219 1 1335 215 87 36 chr3 2779677 2780083 -224744495 + MER113 DNA MER1_type? 3 440 -81 4294 139 67 10 chr3 2780083 2780771 -224743807 + LTR8A LTR ERV1 1 727 0 1335 215 87 36 chr3 2780771 2780857 -224743721 + MER113 DNA MER1_type? 440 520 -1 220 286 48 24 chr3 2781088 2781172 -224743406 + MIR SINE MIR 155 240 -22 1988 145 0 16 chr3 2781194 2781497 -224743081 - AluSx SINE Alu -14 298 1 28 0 0 0 chr3 2781497 2781525 -224743053 + AT_rich Low_complexity Low_complexity 1 28 0 577 277 141 5 chr3 2782041 2782247 -224742331 - MIR SINE MIR -6 256 23 1590 142 47 4 chr3 2782263 2782629 -224741949 + LTR47A LTR ERVL 1 436 -16 1953 169 156 5 chr3 2782629 2783001 -224741577 - MSTA LTR MaLR 0 428 1 1590 142 47 4 chr3 2783001 2783019 -224741559 + LTR47A LTR ERVL 436 452 0 307 293 75 34 chr3 2783033 2783180 -224741398 + LTR47A-int LTR ERVL 15 167 -5176 699 171 43 41 chr3 2783322 2783516 -224741062 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 2783533 2783814 -224740764 + MER41B LTR ERV1 1 282 -353 4759 221 82 41 chr3 2783817 2784038 -224740540 + LTR49-int LTR ERV1 891 1101 -3090 892 129 0 30 chr3 2784038 2784196 -224740382 + FLAM_C SINE Alu 1 154 0 4759 221 82 41 chr3 2784196 2785195 -224739383 + LTR49-int LTR ERV1 1101 2165 -2026 1819 116 41 7 chr3 2785195 2785489 -224739089 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 2785509 2785538 -224739040 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 36 18 18 chr3 2785542 2785597 -224738981 + MLT2A1 LTR ERVL 399 453 0 4812 142 47 58 chr3 2785598 2787079 -224737499 + LTR49-int LTR ERV1 4411 6064 -258 2338 148 133 2 chr3 2787091 2787491 -224737087 + LTR47A LTR ERVL 1 452 0 277 209 132 62 chr3 2788898 2789027 -224735551 + MLT1J2 LTR MaLR 3 140 -310 1714 174 98 113 chr3 2789295 2789509 -224735069 + MLT1D LTR MaLR 1 217 -288 3621 158 6 2 chr3 2789509 2790034 -224734544 + MER1A DNA MER1_type 1 527 0 1714 174 98 113 chr3 2790034 2790332 -224734246 + MLT1D LTR MaLR 217 505 0 302 291 122 17 chr3 2790422 2790594 -224733984 - MIR SINE MIR 0 262 73 4187 118 24 5 chr3 2790665 2791256 -224733322 + LTR43 LTR ERV1 1 602 0 214 308 55 62 chr3 2791879 2791951 -224732627 + MIR SINE MIR 72 143 -119 2289 83 48 0 chr3 2791951 2792240 -224732338 + AluSc SINE Alu 1 303 -6 214 308 55 62 chr3 2792240 2792313 -224732265 + MIR SINE MIR 143 216 -46 238 329 0 37 chr3 2792854 2792936 -224731642 + L2 LINE L2 3192 3270 -2 786 216 32 42 chr3 2793189 2793379 -224731199 + MIR SINE MIR 37 224 -38 237 143 24 24 chr3 2793396 2793438 -224731140 + MLT1D LTR MaLR 1 42 -463 1649 183 62 45 chr3 2793446 2793557 -224731021 + MLT2D LTR ERVL 1 109 -305 2393 60 0 13 chr3 2793557 2793856 -224730722 - AluY SINE Alu -16 295 1 1649 183 62 45 chr3 2793856 2793966 -224730612 + MLT2D LTR ERVL 109 216 -198 2775 195 22 68 chr3 2793966 2794608 -224729970 - LTR9 LTR ERV1 0 612 1 1649 183 62 45 chr3 2794608 2794789 -224729789 + MLT2D LTR ERVL 216 411 -3 1185 254 81 47 chr3 2794791 2795236 -224729342 + MLT1D LTR MaLR 46 505 0 234 222 139 28 chr3 2795918 2796026 -224728552 + MER113 DNA MER1_type? 1 120 -401 2076 128 6 10 chr3 2796627 2796971 -224727607 + AluSx SINE Alu 1 343 0 333 183 42 0 chr3 2798708 2798779 -224725799 - MER116 DNA Mariner -6 74 1 1445 258 11 8 chr3 2799205 2799561 -224725017 - MLT1A2 LTR MaLR -14 360 4 671 306 73 25 chr3 2799748 2800271 -224724307 - L1ME4a LINE L1 -224 5897 5350 352 262 69 48 chr3 2800483 2800628 -224723950 - MLT1K LTR MaLR -167 421 274 321 267 11 7 chr3 2800922 2801043 -224723535 + LTR43 LTR ERV1 223 472 -207 253 229 148 0 chr3 2801890 2801951 -224722627 + L2 LINE L2 3201 3270 -2 249 291 0 25 chr3 2801954 2802033 -224722545 + MIR3 SINE MIR 132 208 0 403 296 23 109 chr3 2802204 2802461 -224722117 + MIR SINE MIR 19 253 -9 30 0 0 0 chr3 2803173 2803203 -224721375 + AT_rich Low_complexity Low_complexity 1 30 0 1334 201 0 76 chr3 2803203 2803297 -224721281 - AluJo SINE Alu -32 280 180 1911 182 12 6 chr3 2803297 2803638 -224720940 - MER61A LTR ERV1 0 343 1 1334 201 0 76 chr3 2803638 2803846 -224720732 - AluJo SINE Alu -132 180 1 458 243 87 28 chr3 2804047 2804207 -224720371 + MIR3 SINE MIR 20 180 -48 304 264 110 110 chr3 2804335 2804562 -224720016 + MIR SINE MIR 4 230 -32 1337 155 4 52 chr3 2804563 2804815 -224719763 - THE1B LTR MaLR 0 364 125 4905 67 1 3 chr3 2804815 2805473 -224719105 - THE1B-int LTR MaLR -923 657 1 1997 115 81 32 chr3 2805473 2805820 -224718758 - THE1B LTR MaLR 0 364 1 188 235 0 0 chr3 2805880 2805914 -224718664 + MIR3 SINE MIR 151 184 -24 1904 147 0 13 chr3 2805914 2806214 -224718364 - AluSx SINE Alu -16 296 1 477 40 40 0 chr3 2806372 2806448 -224718130 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 179 37 10 chr3 2806456 2806858 -224717720 - L1ME1 LINE L1 -7 6159 5747 548 228 8 0 chr3 2806902 2807029 -224717549 - L1ME1 LINE L1 -521 5645 5518 1165 239 84 16 chr3 2807039 2807407 -224717171 - MLT1D LTR MaLR 0 505 113 1122 154 58 92 chr3 2807419 2807753 -224716825 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 2807796 2807879 -224716699 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 2807890 2808060 -224716518 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 2808060 2808367 -224716211 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 2808367 2808775 -224715803 - L1ME1 LINE L1 -825 5341 4902 8102 121 11 0 chr3 2909355 2911408 -224613170 + L1PA5 LINE L1 4092 6154 0 287 350 8 8 chr3 2912137 2912254 -224612324 + L2 LINE L2 3150 3266 -6 1371 172 196 0 chr3 2913415 2913561 -224611017 - AluJo SINE Alu -3 299 183 2123 102 16 7 chr3 2913561 2913864 -224610714 - AluY SINE Alu -5 306 1 1371 172 196 0 chr3 2913864 2913967 -224610611 - AluJo SINE Alu -119 183 1 2279 204 51 44 chr3 2913967 2914517 -224610061 + MLT2B3 LTR ERVL 1 554 0 856 215 82 0 chr3 2914527 2914746 -224609832 - L1ME1 LINE L1 -2929 3217 2981 990 120 0 0 chr3 2914779 2914912 -224609666 - AluSq/x SINE Alu -180 133 1 1010 189 28 35 chr3 2914939 2915087 -224609491 - L1ME1 LINE L1 -3170 2976 2829 1247 218 19 85 chr3 2915087 2915404 -224609174 - AluJb SINE Alu -5 297 2 1010 189 28 35 chr3 2915404 2915509 -224609069 - L1ME1 LINE L1 -3317 2829 2725 507 304 60 0 chr3 2915525 2915693 -224608885 + L1M4 LINE L1 3656 3833 -2313 2296 93 21 0 chr3 2915693 2915984 -224608594 - AluSg1 SINE Alu -12 297 1 1780 85 16 0 chr3 2915984 2916231 -224608347 - PABL_A-int LTR ERV1 -4546 469 219 449 255 10 0 chr3 2916349 2916447 -224608131 - MIR SINE MIR -154 108 10 906 143 0 0 chr3 2918543 2918676 -224605902 + FLAM_C SINE Alu 1 133 -10 2298 88 7 0 chr3 2918682 2918976 -224605602 + AluSp SINE Alu 1 296 -17 2543 40 3 0 chr3 2919406 2919703 -224604875 - AluY SINE Alu -13 298 1 312 27 0 0 chr3 2921737 2921774 -224602804 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1046 190 56 93 chr3 2923231 2923288 -224601290 - L1M4 LINE L1 -1481 4665 4607 2274 96 3 10 chr3 2923288 2923589 -224600989 + AluSp SINE Alu 1 299 -14 1046 190 56 93 chr3 2923589 2923941 -224600637 - L1M4 LINE L1 -1539 4607 4271 425 316 40 11 chr3 2926583 2926757 -224597821 + MIR SINE MIR 48 226 -36 2607 160 35 56 chr3 2927173 2928052 -224596526 - L1M4 LINE L1 -439 5745 4856 1820 152 7 14 chr3 2928052 2928373 -224596205 - AluJb SINE Alu 0 319 1 249 313 119 0 chr3 2928752 2928819 -224595759 + MIR SINE MIR 15 89 -173 704 171 8 8 chr3 2928821 2928938 -224595640 + FLAM_C SINE Alu 2 118 -25 2235 39 0 4 chr3 2928945 2929204 -224595374 + AluY SINE Alu 40 297 -14 290 224 196 42 chr3 2929250 2929393 -224595185 - L2 LINE L2 -3 3310 3146 180 111 0 0 chr3 2930678 2930705 -224593873 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 217 377 57 0 chr3 2930898 2931020 -224593558 + MIR SINE MIR 39 167 -95 265 333 44 9 chr3 2931146 2931260 -224593318 - MIR3 SINE MIR -24 184 67 1190 242 79 0 chr3 2931295 2931638 -224592940 + L1MD3 LINE L1 3586 3955 -2191 670 193 28 7 chr3 2931667 2931812 -224592766 + MLT2D LTR ERVL 71 218 -196 1488 253 96 11 chr3 2931813 2932354 -224592224 + L1MD3 LINE L1 4774 5360 -786 1575 198 104 18 chr3 2932357 2933414 -224591164 + L1MD3 LINE L1 5464 6428 -1567 321 26 0 0 chr3 2933414 2933452 -224591126 + (CA)n Simple_repeat Simple_repeat 2 39 0 1575 198 104 18 chr3 2933452 2934454 -224590124 + L1MD3 LINE L1 6428 7995 0 313 247 216 6 chr3 2934467 2934629 -224589949 + MIR SINE MIR 67 262 0 287 350 8 8 chr3 2935583 2935700 -224588878 - L2 LINE L2 -6 3266 3150 16467 48 7 2 chr3 2936429 2939142 -224585436 - L1PA5 LINE L1 0 6154 3431 315 125 21 0 chr3 2939192 2939240 -224585338 - MADE1 DNA Mariner 0 80 32 204 318 20 80 chr3 2940188 2940339 -224584239 + MIR SINE MIR 10 151 -111 771 222 13 0 chr3 2940381 2940534 -224584044 + MER63A DNA MER1_type 50 204 -6 204 212 23 23 chr3 2943152 2943200 -224581378 - MIR SINE MIR -106 102 54 502 222 121 38 chr3 2944250 2944489 -224580089 - L1M4 LINE L1 -809 5337 5079 715 182 25 19 chr3 2944514 2944673 -224579905 + MER33 DNA MER1_type 15 174 -150 239 225 72 45 chr3 2944673 2944784 -224579794 - L1MCb LINE L1 -4904 1141 1028 2280 112 3 0 chr3 2944815 2945127 -224579451 - AluSq SINE Alu 0 313 1 1278 281 89 53 chr3 2945826 2945936 -224578642 + MLT1E3 LTR MaLR 1 106 -518 1599 163 96 39 chr3 2945936 2946291 -224578287 + THE1C LTR MaLR 1 375 0 1278 281 89 53 chr3 2946291 2946778 -224577800 + MLT1E3 LTR MaLR 106 619 -5 32 26 0 0 chr3 2946846 2946885 -224577693 + AT_rich Low_complexity Low_complexity 1 39 0 339 372 51 60 chr3 2947808 2948222 -224576356 - L2 LINE L2 -6 3266 2857 566 236 106 25 chr3 2948279 2948516 -224576062 + MER5C DNA MER1_type 1 256 -68 279 288 254 0 chr3 2949627 2949769 -224574809 + MIR SINE MIR 37 213 -49 334 254 56 16 chr3 2949861 2949987 -224574591 + MER104 DNA Tc2 26 156 -24 2302 113 0 3 chr3 2950163 2950472 -224574106 - AluSg SINE Alu -2 308 1 493 125 48 19 chr3 2950474 2950578 -224574000 - L1PA8 LINE L1 0 6172 6066 2084 142 3 0 chr3 2951792 2952103 -224572475 + AluSx SINE Alu 1 312 0 200 262 98 0 chr3 2952932 2952993 -224571585 + MIR SINE MIR 80 146 -116 8443 125 6 17 chr3 2953734 2955116 -224569462 - L1P LINE L1 -795 5351 3985 554 159 24 56 chr3 2955622 2955732 -224568846 + MER53 DNA DNA 1 108 -81 2322 189 38 6 chr3 2955732 2956228 -224568350 + MER67D LTR ERV1 1 512 -2 554 159 24 56 chr3 2956228 2956243 -224568335 + MER53 DNA DNA 108 122 -67 180 0 0 0 chr3 2956303 2956323 -224568255 + (T)n Simple_repeat Simple_repeat 1 20 0 357 333 50 6 chr3 2956363 2956522 -224568056 + MIR SINE MIR 85 250 -12 2820 13 0 0 chr3 2957379 2957689 -224566889 - AluY SINE Alu -1 310 1 257 265 73 15 chr3 2958055 2958123 -224566455 - MIR SINE MIR -108 100 29 26 50 0 0 chr3 2958138 2958178 -224566400 + AT_rich Low_complexity Low_complexity 1 40 0 1489 303 48 32 chr3 2958310 2958940 -224565638 - MLT2F LTR ERVL -6 657 18 1911 173 0 0 chr3 2958958 2959264 -224565314 + AluJo SINE Alu 2 307 -5 22 56 0 0 chr3 2959375 2959411 -224565167 + AT_rich Low_complexity Low_complexity 1 36 0 530 255 24 34 chr3 2961595 2961803 -224562775 + L1MC/D LINE L1 5614 5819 -1989 21 36 0 0 chr3 2961832 2961860 -224562718 + AT_rich Low_complexity Low_complexity 1 28 0 817 212 19 66 chr3 2962507 2962719 -224561859 - MLT1A2 LTR MaLR 0 374 173 414 0 0 0 chr3 2962744 2962790 -224561788 + (GA)n Simple_repeat Simple_repeat 1 46 0 693 191 79 20 chr3 2962811 2962963 -224561615 - MLT1A2 LTR MaLR -213 161 1 230 318 34 34 chr3 2962993 2963081 -224561497 - MIR SINE MIR -89 119 32 4212 144 30 7 chr3 2963134 2963871 -224560707 + Tigger3b DNA MER2_type 1 754 -477 551 248 83 0 chr3 2963887 2964032 -224560546 - FAM SINE Alu -18 157 1 291 139 18 4 chr3 2964035 2964092 -224560486 - AluJo SINE Alu -166 136 85 4475 148 7 44 chr3 2964115 2964933 -224559645 + L1PA16 LINE L1 5377 6164 -2 36 53 0 0 chr3 2965007 2965064 -224559514 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr3 2965192 2965215 -224559363 + AT_rich Low_complexity Low_complexity 1 23 0 285 314 183 22 chr3 2966345 2966482 -224558096 - MLT1J2 LTR MaLR -38 412 254 357 338 7 28 chr3 2966670 2966812 -224557766 - MIR SINE MIR -116 146 8 25 90 0 0 chr3 2967261 2967328 -224557250 + AT_rich Low_complexity Low_complexity 1 67 0 1561 173 10 17 chr3 2967853 2967866 -224556712 - AluJo SINE Alu -9 303 291 186 43 0 0 chr3 2967866 2967889 -224556689 + (TC)n Simple_repeat Simple_repeat 2 24 0 1561 173 10 17 chr3 2967889 2968170 -224556408 - AluJo SINE Alu -21 291 11 180 246 35 0 chr3 2968315 2968372 -224556206 - MIR SINE MIR -10 252 194 333 335 112 28 chr3 2968395 2968610 -224555968 - MIR SINE MIR 0 262 30 730 252 50 12 chr3 2969295 2969671 -224554907 + MLT1J1 LTR MaLR 1 440 -10 407 244 12 0 chr3 2969728 2969814 -224554764 - MLT1J1 LTR MaLR -120 326 240 2380 69 13 3 chr3 2969894 2970197 -224554381 + AluSg SINE Alu 1 306 -4 2077 121 0 3 chr3 2970246 2970552 -224554026 + AluSx SINE Alu 3 307 0 3010 162 0 6 chr3 2970895 2971384 -224553194 - MER66B LTR ERV1 0 486 1 267 31 0 0 chr3 2971935 2971967 -224552611 + (TG)n Simple_repeat Simple_repeat 1 32 0 1337 274 47 24 chr3 2972192 2972616 -224551962 + MLT1J1 LTR MaLR 2 435 -11 24 0 0 0 chr3 2972646 2972670 -224551908 + AT_rich Low_complexity Low_complexity 1 24 0 260 374 39 39 chr3 2973306 2973662 -224550916 + L2 LINE L2 2364 2719 -595 322 292 63 66 chr3 2973768 2974134 -224550444 - HAL1b LINE L1 -6 2501 750 341 329 0 0 chr3 2974292 2974371 -224550207 + MER91A DNA MER1_type 2 80 -116 328 360 97 23 chr3 2974456 2974756 -224549822 - L2 LINE L2 -1258 2056 1735 1949 192 11 8 chr3 2974931 2975295 -224549283 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr3 2975945 2975967 -224548611 + AT_rich Low_complexity Low_complexity 1 22 0 1992 144 0 0 chr3 2976570 2976861 -224547717 + AluSx SINE Alu 11 301 -11 1436 210 39 3 chr3 2977487 2977773 -224546805 - AluJb SINE Alu -6 296 1 233 278 11 100 chr3 2978756 2978846 -224545732 + MIR SINE MIR 51 132 -130 207 356 7 68 chr3 2978926 2979072 -224545506 + MIR3 SINE MIR 59 195 -13 332 255 20 41 chr3 2979676 2979774 -224544804 + MIR3 SINE MIR 76 171 -37 449 339 27 27 chr3 2979795 2979978 -224544600 - MER5A DNA MER1_type -5 184 2 630 284 74 16 chr3 2980492 2980735 -224543843 + MIR SINE MIR 6 262 0 246 306 194 0 chr3 2981019 2981117 -224543461 - L2 LINE L2 0 3313 3197 342 67 0 0 chr3 2981276 2981321 -224543257 + (T)n Simple_repeat Simple_repeat 1 45 0 391 319 14 35 chr3 2981808 2981952 -224542626 - MER91A DNA MER1_type -54 142 2 295 247 13 13 chr3 2983611 2983688 -224540890 - MLT1I LTR MaLR -4 405 329 453 315 99 9 chr3 2984191 2984413 -224540165 + MIR SINE MIR 6 247 -15 28 0 0 0 chr3 2984988 2985016 -224539562 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 2985999 2986019 -224538559 + (A)n Simple_repeat Simple_repeat 1 20 0 967 116 0 0 chr3 2986942 2987071 -224537507 + AluSq SINE Alu 1 129 -183 1960 129 0 36 chr3 2987083 2987392 -224537186 + AluSx SINE Alu 1 298 -14 325 259 19 83 chr3 2987546 2987620 -224536958 + MER102b DNA MER1_type 229 295 -1133 2133 177 50 17 chr3 2987620 2988038 -224536540 - MSTB1 LTR MaLR 0 432 1 325 259 19 83 chr3 2988038 2988071 -224536507 + MER102b DNA MER1_type 295 329 -12 1749 152 0 71 chr3 2988206 2988529 -224536049 - AluJb SINE Alu -12 300 1 256 347 88 7 chr3 2988624 2988771 -224535807 - MIR3 SINE MIR -12 196 38 296 250 29 0 chr3 2988812 2988880 -224535698 + MIR SINE MIR 185 254 -8 208 343 14 0 chr3 2990746 2990816 -224533762 - L2 LINE L2 -2 3270 3200 387 251 106 67 chr3 2991107 2991286 -224533292 + MIR SINE MIR 77 262 0 682 295 70 7 chr3 2992213 2992668 -224531910 + MLT1K LTR MaLR 24 582 -6 21 0 0 0 chr3 2992952 2992973 -224531605 + AT_rich Low_complexity Low_complexity 1 21 0 1034 113 94 6 chr3 2993347 2993507 -224531071 + AluSq SINE Alu 129 302 -11 329 275 25 0 chr3 2993994 2994074 -224530504 + L2 LINE L2 3232 3313 0 237 196 0 0 chr3 2994571 2994627 -224529951 + (ATGGTG)n Simple_repeat Simple_repeat 4 59 0 25 31 0 0 chr3 2995296 2995328 -224529250 + AT_rich Low_complexity Low_complexity 1 32 0 53 30 0 0 chr3 2995707 2995774 -224528804 + AT_rich Low_complexity Low_complexity 1 67 0 39 50 0 0 chr3 2996739 2996799 -224527779 + AT_rich Low_complexity Low_complexity 1 60 0 2219 201 62 67 chr3 2996899 2997482 -224527096 - L1MDa LINE L1 -5935 605 26 2081 105 4 0 chr3 2997561 2997837 -224526741 + AluSq SINE Alu 1 277 -36 31 0 0 0 chr3 2997856 2997887 -224526691 + AT_rich Low_complexity Low_complexity 1 31 0 934 226 5 5 chr3 2998495 2998685 -224525893 + MER58A DNA MER1_type 34 223 -1 8050 12 0 0 chr3 2998996 3000598 -224523980 - L1HS LINE L1 0 6155 4554 453 330 76 21 chr3 3000666 3000957 -224523621 + L2 LINE L2 2159 2465 -849 618 291 180 26 chr3 3000957 3001389 -224523189 - L1MEd LINE L1 -4908 1211 838 1582 110 12 31 chr3 3001389 3001643 -224522935 - AluSq SINE Alu 0 313 65 618 291 180 26 chr3 3001643 3001714 -224522864 - L1MEd LINE L1 -5281 838 779 21 0 0 0 chr3 3001780 3001801 -224522777 + AT_rich Low_complexity Low_complexity 1 21 0 673 223 0 0 chr3 3001846 3001967 -224522611 - FLAM_A SINE Alu -12 121 1 425 306 123 56 chr3 3002039 3002554 -224522024 + L2 LINE L2 2683 3239 -74 647 183 8 16 chr3 3002554 3002680 -224521898 - FLAM_A SINE Alu -4 129 5 425 306 123 56 chr3 3002680 3002748 -224521830 + L2 LINE L2 3239 3301 -12 201 74 0 0 chr3 3003599 3003626 -224520952 + (TA)n Simple_repeat Simple_repeat 2 28 0 1062 139 41 0 chr3 3003626 3003798 -224520780 - AluSg/x SINE Alu 0 312 134 204 350 122 50 chr3 3003837 3004017 -224520561 - MIR SINE MIR -50 212 20 253 282 118 47 chr3 3004388 3004558 -224520020 + MER5A DNA MER1_type 7 188 -1 622 286 104 50 chr3 3006200 3006602 -224517976 + HAL1b LINE L1 344 574 -774 22 35 0 0 chr3 3007169 3007198 -224517380 + AT_rich Low_complexity Low_complexity 1 29 0 479 183 104 24 chr3 3007406 3007570 -224517008 - MER104 DNA MER2_type -3 177 1 318 185 8 100 chr3 3008238 3008368 -224516210 + L1ME4a LINE L1 5966 6083 -38 6700 126 20 53 chr3 3008414 3009686 -224514892 + Tigger3b DNA MER2_type 3 1231 0 302 240 0 94 chr3 3009686 3009782 -224514796 + L1MC4 LINE L1 6617 6703 -1339 243 0 0 0 chr3 3009782 3009809 -224514769 + (TA)n Simple_repeat Simple_repeat 1 27 0 696 183 72 20 chr3 3010340 3010493 -224514085 + MER5A DNA MER1_type 1 161 -28 369 75 0 0 chr3 3010613 3010666 -224513912 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 71 0 0 chr3 3011028 3011070 -224513508 - L1MA10 LINE L1 -10 6324 6283 378 165 13 13 chr3 3011070 3011149 -224513429 + L1MB1 LINE L1 6004 6082 -107 677 159 0 0 chr3 3011213 3011320 -224513258 - AluJb SINE Alu -205 107 1 25 0 0 0 chr3 3011579 3011604 -224512974 + AT_rich Low_complexity Low_complexity 1 25 0 1482 122 215 4 chr3 3011640 3011886 -224512692 + AluSg1 SINE Alu 1 298 -11 549 326 73 55 chr3 3011911 3012294 -224512284 + L2 LINE L2 2919 3308 -5 899 203 115 5 chr3 3012319 3012511 -224512067 - MER58A DNA MER1_type -1 223 11 284 93 0 0 chr3 3012684 3012727 -224511851 - MADE1 DNA Mariner -37 43 1 1279 167 8 16 chr3 3012727 3012984 -224511594 - L1MC3 LINE L1 -24 7761 7507 195 358 20 54 chr3 3013185 3013333 -224511245 + MIR SINE MIR 70 212 -50 925 183 30 35 chr3 3014170 3014372 -224510206 + MER3 DNA MER1_type 9 209 0 448 281 191 20 chr3 3015010 3015209 -224509369 - MIR SINE MIR -6 256 24 528 286 5 77 chr3 3015655 3015919 -224508659 - MIR SINE MIR -8 254 13 195 250 0 0 chr3 3016092 3016132 -224508446 - MIR SINE MIR -73 135 96 438 20 0 0 chr3 3017736 3017787 -224506791 + (CA)n Simple_repeat Simple_repeat 2 52 0 398 309 172 0 chr3 3018565 3018769 -224505809 - MIR SINE MIR -6 256 18 2164 57 4 0 chr3 3019779 3020101 -224504477 - AluY SINE Alu 0 323 1 696 242 55 0 chr3 3020241 3020406 -224504172 + MER5A DNA MER1_type 15 188 -1 2435 52 10 0 chr3 3020635 3020943 -224503635 - AluY SINE Alu 0 311 1 190 265 0 20 chr3 3021404 3021453 -224503125 + L2 LINE L2 3209 3256 -16 323 57 0 22 chr3 3022148 3022201 -224502377 + MLT2A2 LTR ERVL 411 453 0 41160 70 12 5 chr3 3022201 3022669 -224501909 + HERVL-A2 LTR ERVL 1 465 -5189 2027 135 26 3 chr3 3022669 3022973 -224501605 - AluSq SINE Alu -2 311 1 41160 70 12 5 chr3 3022973 3027793 -224496785 + HERVL-A2 LTR ERVL 465 5323 -331 485 224 11 17 chr3 3027950 3028129 -224496449 + (TA)n Simple_repeat Simple_repeat 2 179 0 2688 108 23 8 chr3 3028140 3028538 -224496040 - MLT2A1 LTR ERVL -40 404 1 2640 72 0 0 chr3 3028538 3028883 -224495695 - HERVL-A1 LTR ERVL 0 5654 5310 369 158 0 0 chr3 3028885 3028967 -224495611 + (TA)n Simple_repeat Simple_repeat 2 83 0 239 62 125 21 chr3 3028968 3029016 -224495562 + MLT2A2 LTR ERVL 401 453 0 597 165 0 10 chr3 3029016 3029119 -224495459 - L1 LINE L1 -1174 4972 4871 1845 144 34 42 chr3 3029119 3029529 -224495049 + L1MA4 LINE L1 5894 6300 0 272 297 36 27 chr3 3030730 3030841 -224493737 + MIR SINE MIR 36 147 -61 3542 113 12 0 chr3 3030841 3031343 -224493235 + L1PA7 LINE L1 692 1199 -5262 23900 98 15 8 chr3 3031349 3035727 -224488851 + L1PA7 LINE L1 2067 6469 0 6746 112 8 2 chr3 3035728 3036768 -224487810 + L1PA7 LINE L1 2665 3710 -2751 10649 96 9 1 chr3 3036768 3039086 -224485492 + L1PA7 LINE L1 4130 6456 -13 214 267 120 13 chr3 3039391 3039466 -224485112 - MER5A DNA MER1_type -73 116 34 528 312 12 18 chr3 3040477 3040647 -224483931 + MIR SINE MIR 29 197 -65 297 356 0 0 chr3 3040800 3040887 -224483691 + L2 LINE L2 3227 3313 0 2002 117 3 36 chr3 3040907 3041216 -224483362 + AluSx SINE Alu 1 299 -13 395 303 30 30 chr3 3041413 3041578 -224483000 - MIR SINE MIR -89 173 9 3264 247 74 44 chr3 3042022 3042378 -224482200 - L1MC4 LINE L1 -327 7715 7371 1228 202 132 0 chr3 3042378 3042636 -224481942 + AluJo SINE Alu 4 295 -7 3264 247 74 44 chr3 3042636 3043500 -224481078 - L1MC4 LINE L1 -671 7371 6459 2602 125 0 0 chr3 3045933 3046308 -224478270 + THE1C LTR MaLR 1 375 0 27 0 0 0 chr3 3046609 3046636 -224477942 + AT_rich Low_complexity Low_complexity 1 27 0 225 368 123 0 chr3 3046656 3046770 -224477808 + L2 LINE L2 3137 3264 -8 280 230 27 0 chr3 3046939 3047013 -224477565 - MIR SINE MIR -3 259 184 367 225 0 0 chr3 3047268 3047339 -224477239 + MIR SINE MIR 77 147 -115 184 320 26 26 chr3 3047791 3047869 -224476709 + MIR SINE MIR 159 236 -26 1708 191 0 3 chr3 3048668 3048972 -224475606 + AluJo SINE Alu 1 303 -9 418 51 0 17 chr3 3049168 3049227 -224475351 + (TG)n Simple_repeat Simple_repeat 2 59 0 317 348 62 12 chr3 3049487 3049648 -224474930 + L1MEc LINE L1 426 594 -6013 1640 180 23 3 chr3 3049680 3049980 -224474598 + AluJb SINE Alu 1 306 -6 492 276 120 31 chr3 3050119 3050659 -224473919 + L1MEc LINE L1 1107 1694 -4732 728 211 65 60 chr3 3050725 3050862 -224473716 - MER58A DNA MER1_type -2198 222 82 1102 209 73 48 chr3 3050862 3051216 -224473362 - MLT1A1 LTR MaLR -2 363 1 728 211 65 60 chr3 3051216 3051263 -224473315 - MER58A DNA MER1_type -2338 82 37 399 315 51 30 chr3 3051288 3051523 -224473055 + L1MEc LINE L1 2091 2330 -4277 453 229 46 106 chr3 3051575 3051877 -224472701 - MLT1H LTR MaLR -38 511 228 30 27 0 0 chr3 3051934 3051971 -224472607 + AT_rich Low_complexity Low_complexity 1 37 0 467 221 116 53 chr3 3052016 3052319 -224472259 + L1MEc LINE L1 1304 1625 -4801 1163 158 51 111 chr3 3052476 3052833 -224471745 - MER21A LTR ERV1 -498 365 1 355 293 33 14 chr3 3052897 3053088 -224471490 + L1MEc LINE L1 3534 3729 -2697 464 356 25 22 chr3 3053123 3053440 -224471138 + L1MEc LINE L1 3887 4204 -2222 387 297 10 35 chr3 3053573 3053775 -224470803 + L1MEc LINE L1 4307 4503 -1923 303 121 11 17 chr3 3053781 3053849 -224470729 + L1MA7 LINE L1 6038 6104 -187 2904 147 36 8 chr3 3053849 3054352 -224470226 - Tigger3(Golem) DNA MER2_type 0 3029 2513 2036 207 22 12 chr3 3054358 3054764 -224469814 - MER47B DNA MER2_type -8 410 1 462 261 48 35 chr3 3054769 3055079 -224469499 + L1M4 LINE L1 3030 3343 -2803 539 276 0 6 chr3 3055093 3055249 -224469329 + L1ME3 LINE L1 6003 6157 -5 361 317 0 19 chr3 3056232 3056336 -224468242 - L2 LINE L2 -17 3255 3154 678 314 105 32 chr3 3057501 3057976 -224466602 - L2 LINE L2 0 3313 2804 613 179 0 8 chr3 3058015 3058132 -224466446 + Tigger2a DNA MER2_type 2 117 -317 7235 40 0 0 chr3 3058158 3059123 -224465455 - L1PA5 LINE L1 -2 6152 5175 1208 118 0 0 chr3 3059126 3059296 -224465282 - AluY SINE Alu -10 301 132 2102 138 21 0 chr3 3059338 3059663 -224464915 + Tigger2a DNA MER2_type 103 434 0 847 308 83 11 chr3 3059776 3060319 -224464259 - MLT2F LTR ERVL 0 663 1 744 296 9 5 chr3 3061284 3061500 -224463078 - MIR SINE MIR 0 262 46 791 233 91 25 chr3 3061779 3062286 -224462292 + MLT1G1 LTR MaLR 1 589 -1 535 288 23 28 chr3 3064047 3064224 -224460354 - MIR SINE MIR -8 254 79 491 218 73 8 chr3 3064229 3064353 -224460225 + MER39 LTR ERV1 1 132 -575 220 302 94 10 chr3 3065700 3065796 -224458782 - L2 LINE L2 -4 3309 3206 23 0 0 0 chr3 3066488 3066511 -224458067 + AT_rich Low_complexity Low_complexity 1 23 0 2029 106 0 0 chr3 3067227 3067491 -224457087 - AluY SINE Alu -16 295 32 260 174 0 0 chr3 3069636 3069682 -224454896 - L2 LINE L2 -4 3268 3223 811 212 0 32 chr3 3071013 3071130 -224453448 + MER3 DNA MER1_type 26 136 -73 1564 161 94 25 chr3 3071130 3071416 -224453162 - AluJb SINE Alu -6 306 1 811 212 0 32 chr3 3071416 3071487 -224453091 + MER3 DNA MER1_type 136 208 -1 277 277 0 0 chr3 3071434 3071499 -224453079 - MER3 DNA MER1_type -108 101 37 * 21 0 0 0 chr3 3071580 3071601 -224452977 + AT_rich Low_complexity Low_complexity 1 21 0 379 296 51 23 chr3 3071681 3071857 -224452721 - MIR SINE MIR -65 197 17 190 205 26 0 chr3 3071863 3071902 -224452676 - L2 LINE L2 -12 3260 3221 343 214 48 68 chr3 3072322 3072380 -224452198 + MER5A DNA MER1_type 12 69 -120 312 27 0 0 chr3 3072380 3072417 -224452161 + (CA)n Simple_repeat Simple_repeat 2 38 0 343 214 48 68 chr3 3072417 3072461 -224452117 + MER5A DNA MER1_type 69 112 -77 507 318 74 56 chr3 3072553 3073091 -224451487 + L1MEd LINE L1 266 813 -5306 24 53 0 0 chr3 3073092 3073130 -224451448 + AT_rich Low_complexity Low_complexity 1 38 0 3719 196 38 6 chr3 3073264 3073952 -224450626 + L1MA4 LINE L1 10 719 -4609 539 202 25 10 chr3 3073954 3074218 -224450360 + GA-rich Low_complexity Low_complexity 1 267 0 2665 143 56 78 chr3 3074219 3074592 -224449986 + L1MA4 LINE L1 680 1060 -4427 1622 196 0 19 chr3 3074592 3074909 -224449669 + AluJb SINE Alu 1 311 -1 2665 143 56 78 chr3 3074909 3075038 -224449540 + L1MA4 LINE L1 1060 1190 -4297 1728 176 4 4 chr3 3075038 3075317 -224449261 + AluJb SINE Alu 1 279 -33 225 0 48 48 chr3 3075318 3075360 -224449218 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2665 143 56 78 chr3 3075360 3075614 -224448964 + L1MA4 LINE L1 1189 1422 -4065 * 3955 171 24 13 chr3 3075600 3076440 -224448138 + L1MA4 LINE L1 3779 4627 -1701 7882 180 21 28 chr3 3076442 3078110 -224446468 + L1PA10 LINE L1 920 2575 -3571 9000 119 10 10 chr3 3078118 3080357 -224444221 + L1PA10 LINE L1 3942 6168 0 2098 121 0 0 chr3 3080365 3080666 -224443912 + AluSg SINE Alu 1 301 0 1716 162 22 22 chr3 3080668 3081038 -224443540 + L1MA4 LINE L1 4604 4973 -1355 657 151 0 0 chr3 3081063 3081182 -224443396 + GA-rich Low_complexity Low_complexity 4 122 0 5486 176 22 9 chr3 3081182 3082682 -224441896 + L1MA4 LINE L1 4967 6482 0 809 284 103 36 chr3 3082693 3083817 -224440761 + L1ME LINE L1 4487 5684 -486 1817 173 7 0 chr3 3084518 3084818 -224439760 + AluJb SINE Alu 1 302 -10 273 128 0 0 chr3 3085107 3085154 -224439424 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 2435 52 10 0 chr3 3087425 3087733 -224436845 + AluY SINE Alu 1 311 0 696 242 55 0 chr3 3087962 3088127 -224436451 - MER5A DNA MER1_type -1 188 15 2165 57 4 0 chr3 3088267 3088589 -224435989 + AluY SINE Alu 1 323 0 398 309 172 0 chr3 3089599 3089803 -224434775 + MIR SINE MIR 18 256 -6 438 20 0 0 chr3 3090581 3090632 -224433946 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 250 0 0 chr3 3092236 3092276 -224432302 + MIR SINE MIR 96 135 -73 528 286 5 77 chr3 3092449 3092713 -224431865 + MIR SINE MIR 13 254 -8 448 281 191 20 chr3 3093159 3093358 -224431220 + MIR SINE MIR 24 256 -6 925 183 30 35 chr3 3093996 3094198 -224430380 - MER3 DNA MER1_type 0 209 9 195 358 20 54 chr3 3095035 3095183 -224429395 - MIR SINE MIR -50 212 70 1279 167 8 16 chr3 3095384 3095641 -224428937 + L1MC3 LINE L1 7507 7761 -24 284 93 0 0 chr3 3095641 3095684 -224428894 + MADE1 DNA Mariner 1 43 -37 899 203 115 5 chr3 3095857 3096049 -224428529 + MER58A DNA MER1_type 11 223 -1 549 326 73 55 chr3 3096074 3096457 -224428121 - L2 LINE L2 -5 3308 2919 1482 122 215 4 chr3 3096482 3096728 -224427850 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr3 3096764 3096789 -224427789 + AT_rich Low_complexity Low_complexity 1 25 0 677 159 0 0 chr3 3097048 3097155 -224427423 + AluJb SINE Alu 1 107 -205 392 161 12 12 chr3 3097219 3097300 -224427278 - L1MB1 LINE L1 -107 6082 6002 312 71 0 0 chr3 3097300 3097340 -224427238 + L1MA10 LINE L1 6283 6324 -10 369 75 0 0 chr3 3097702 3097755 -224426823 + (TG)n Simple_repeat Simple_repeat 2 54 0 696 183 72 20 chr3 3097875 3098028 -224426550 - MER5A DNA MER1_type -28 161 1 243 0 0 0 chr3 3098559 3098586 -224425992 + (TA)n Simple_repeat Simple_repeat 2 28 0 302 240 0 94 chr3 3098586 3098682 -224425896 - L1MC4 LINE L1 -1339 6703 6617 6700 126 20 53 chr3 3098682 3099954 -224424624 - Tigger3b DNA MER2_type 0 1231 3 318 185 8 100 chr3 3100000 3100130 -224424448 - L1ME4a LINE L1 -38 6083 5966 479 183 104 24 chr3 3100798 3100962 -224423616 + MER104 DNA MER2_type 1 177 -3 22 35 0 0 chr3 3101170 3101199 -224423379 + AT_rich Low_complexity Low_complexity 1 29 0 622 286 104 50 chr3 3101766 3102168 -224422410 - HAL1b LINE L1 -774 574 344 253 282 118 47 chr3 3103810 3103980 -224420598 - MER5A DNA MER1_type -1 188 7 204 350 122 50 chr3 3104351 3104531 -224420047 + MIR SINE MIR 20 212 -50 1062 139 41 0 chr3 3104570 3104742 -224419836 + AluSg/x SINE Alu 134 312 0 201 74 0 0 chr3 3104742 3104769 -224419809 + (TA)n Simple_repeat Simple_repeat 2 28 0 398 305 123 57 chr3 3105622 3105690 -224418888 - L2 LINE L2 -12 3301 3239 647 183 8 16 chr3 3105690 3105816 -224418762 + FLAM_A SINE Alu 5 129 -4 398 305 123 57 chr3 3105816 3106332 -224418246 - L2 LINE L2 -74 3239 2683 673 223 0 0 chr3 3106404 3106525 -224418053 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr3 3106570 3106591 -224417987 + AT_rich Low_complexity Low_complexity 1 21 0 618 291 180 26 chr3 3106657 3106728 -224417850 + L1MEd LINE L1 779 838 -5281 1582 110 12 31 chr3 3106728 3106982 -224417596 + AluSq SINE Alu 65 313 0 618 291 180 26 chr3 3106982 3107414 -224417164 + L1MEd LINE L1 838 1211 -4908 453 330 76 21 chr3 3107414 3107705 -224416873 - L2 LINE L2 -849 2465 2159 8009 13 0 0 chr3 3107773 3109375 -224415203 + L1HS LINE L1 4554 6155 0 896 230 5 5 chr3 3109688 3109875 -224414703 - MER58A DNA MER1_type -4 220 34 6991 51 11 7 chr3 3109923 3110883 -224413695 + L1PA6 LINE L1 5184 6147 -7 237 139 0 0 chr3 3111006 3111049 -224413529 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr3 3111302 3111323 -224413255 + AT_rich Low_complexity Low_complexity 1 21 0 225 296 21 63 chr3 3111646 3111788 -224412790 + L3b LINE CR1 1317 1452 -131 228 67 0 0 chr3 3112027 3112057 -224412521 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 382 305 241 12 chr3 3112057 3112306 -224412272 - L2 LINE L2 -2 3311 3006 322 286 32 84 chr3 3113448 3113602 -224410976 - MIR3 SINE MIR -27 181 36 357 233 0 29 chr3 3115593 3115696 -224408882 + LTR67 LTR ERVL 452 551 -6 776 329 80 6 chr3 3117648 3118010 -224406568 - LTR16C LTR ERVL -7 484 96 206 291 0 0 chr3 3120030 3120085 -224404493 - L2 LINE L2 -15 3298 3244 228 226 19 0 chr3 3120396 3120449 -224404129 - L2 LINE L2 -2 3270 3217 497 292 49 15 chr3 3120486 3120753 -224403825 + L1MC5 LINE L1 7474 7749 -212 26 0 0 0 chr3 3120757 3120783 -224403795 + AT_rich Low_complexity Low_complexity 1 26 0 564 56 0 0 chr3 3122087 3122159 -224402419 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 220 304 43 0 chr3 3122383 3122452 -224402126 + L2 LINE L2 3201 3272 0 270 306 41 10 chr3 3123672 3123770 -224400808 - MLT1L LTR MaLR -350 265 165 267 167 139 0 chr3 3125582 3125654 -224398924 + MIR SINE MIR 178 259 -3 425 355 84 12 chr3 3126055 3126543 -224398035 - L1MC4a LINE L1 -1978 5830 5308 316 288 62 0 chr3 3126723 3126883 -224397695 - L1MC4a LINE L1 -1087 5059 4890 498 114 0 0 chr3 3127676 3127746 -224396832 + AluJ/FRAM SINE Alu 226 295 -17 364 235 163 60 chr3 3128180 3128346 -224396232 + MER20 DNA MER1_type 10 192 -27 1995 154 3 0 chr3 3128616 3128927 -224395651 - AluSx SINE Alu 0 312 1 316 257 81 0 chr3 3130115 3130189 -224394389 + L2 LINE L2 3233 3312 -1 311 304 61 9 chr3 3130251 3130366 -224394212 + MIR3 SINE MIR 34 154 -54 4163 114 35 31 chr3 3130658 3130980 -224393598 - L1MA2 LINE L1 0 6304 5985 2090 125 26 0 chr3 3130980 3131284 -224393294 - AluSp SINE Alu -1 312 1 4163 114 35 31 chr3 3131284 3131681 -224392897 - L1MA2 LINE L1 -319 5985 5582 1608 205 14 7 chr3 3131681 3131969 -224392609 - LTR10B LTR ERV1 0 547 258 10369 244 19 32 chr3 3132044 3135286 -224389292 - LTR10B-int LTR ERV1 0 7769 4185 1049 249 89 4 chr3 3135282 3135551 -224389027 - LTR10B-int LTR ERV1 -6353 296 5 * 1753 168 14 0 chr3 3135551 3135837 -224388741 - LTR10B LTR ERV1 0 547 258 1973 158 24 3 chr3 3135912 3136418 -224388160 - L1M1 LINE L1 -720 5585 5072 1197 147 96 97 chr3 3136685 3137043 -224387535 - MER4A LTR ERV1 0 664 261 379 110 132 55 chr3 3137043 3137134 -224387444 - MER4A LTR ERV1 -566 98 1 2101 122 0 4 chr3 3137318 3137597 -224386981 + AluSx SINE Alu 5 282 -30 317 309 0 73 chr3 3137626 3137762 -224386816 - L2 LINE L2 -21 3292 3167 974 241 106 20 chr3 3137872 3138175 -224386403 + MLT2D LTR ERVL 78 406 -8 210 306 178 22 chr3 3138205 3138385 -224386193 - L2 LINE L2 -217 3096 2889 1669 138 160 9 chr3 3138425 3138743 -224385835 + MSTA LTR MaLR 63 428 0 441 229 10 0 chr3 3140314 3140410 -224384168 - MER5A DNA MER1_type -83 106 10 1253 295 45 14 chr3 3140732 3141173 -224383405 + L1ME LINE L1 27 481 -5589 1792 241 97 11 chr3 3141238 3141876 -224382702 + L1M4 LINE L1 4475 5167 -979 2854 204 60 48 chr3 3141941 3142823 -224381755 + L1MC4 LINE L1 6936 7828 -214 21 36 0 0 chr3 3142907 3142935 -224381643 + AT_rich Low_complexity Low_complexity 1 28 0 727 131 37 0 chr3 3143158 3143265 -224381313 + MER4B LTR ERV1 500 610 0 2360 71 3 0 chr3 3143912 3144220 -224380358 - AluY SINE Alu -2 309 1 2120 113 0 26 chr3 3144659 3144968 -224379610 + AluSx SINE Alu 1 301 -11 246 32 0 0 chr3 3145773 3145804 -224378774 + (TG)n Simple_repeat Simple_repeat 1 31 0 884 213 0 24 chr3 3245920 3246089 -224278489 - FAM SINE Alu -10 165 1 499 275 76 28 chr3 3246358 3246569 -224278009 - MLT1J2 LTR MaLR -171 279 59 190 213 85 0 chr3 3246595 3246642 -224277936 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 3246923 3247206 -224277372 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 3247333 3247470 -224277108 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 3247556 3247721 -224276857 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 3248167 3248567 -224276011 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 3248849 3248871 -224275707 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 3249155 3249461 -224275117 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 3249506 3249858 -224274720 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 3249907 3250065 -224274513 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 3250338 3250499 -224274079 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 3252102 3252134 -224272444 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 3252496 3252783 -224271795 - L1ME3A LINE L1 -341 5829 5521 2168 112 0 7 chr3 3252787 3253091 -224271487 + AluY SINE Alu 1 302 -9 4676 76 8 2 chr3 3253103 3253735 -224270843 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 3254907 3254965 -224269613 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 3255032 3255170 -224269408 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 3255182 3255316 -224269262 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 3255559 3255737 -224268841 + FAM SINE Alu 1 174 -1 21 0 0 0 chr3 3256823 3256844 -224267734 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 3257765 3257960 -224266618 + MIR SINE MIR 59 261 -1 3676 197 37 26 chr3 3258556 3259711 -224264867 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 3259747 3259810 -224264768 + L1MB7 LINE L1 6112 6174 -10 2260 60 46 0 chr3 3260198 3260481 -224264097 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr3 3260711 3260733 -224263845 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr3 3260850 3260906 -224263672 + AT_rich Low_complexity Low_complexity 1 56 0 221 269 216 15 chr3 3261057 3261191 -224263387 - MIR SINE MIR -28 234 74 2349 64 7 10 chr3 3261347 3261645 -224262933 + AluSq SINE Alu 1 297 -16 314 379 0 0 chr3 3261778 3261881 -224262697 - L3 LINE CR1 -40 1537 1435 213 205 0 0 chr3 3261886 3261925 -224262653 + (ATG)n Simple_repeat Simple_repeat 1 39 0 579 275 71 6 chr3 3261964 3262146 -224262432 - MIR SINE MIR -63 199 6 474 161 44 21 chr3 3262166 3262396 -224262182 + CT-rich Low_complexity Low_complexity 1 235 0 296 305 34 17 chr3 3262630 3262748 -224261830 + MIR SINE MIR 142 261 -1 294 29 0 0 chr3 3263313 3263348 -224261230 + (TG)n Simple_repeat Simple_repeat 2 36 0 203 79 0 79 chr3 3263795 3263833 -224260745 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 246 226 85 104 chr3 3263934 3264007 -224260571 + L2 LINE L2 3210 3282 -31 1652 207 81 29 chr3 3264007 3264451 -224260127 - MLT1C LTR MaLR 0 467 1 246 226 85 104 chr3 3264451 3264483 -224260095 + L2 LINE L2 3282 3313 0 1428 216 71 31 chr3 3266513 3266962 -224257616 - MLT1C LTR MaLR 0 467 1 1036 200 16 5 chr3 3267244 3267434 -224257144 + AluJb SINE Alu 89 280 -32 270 0 0 0 chr3 3267442 3267472 -224257106 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 342 0 0 0 chr3 3267471 3267509 -224257069 + (GA)n Simple_repeat Simple_repeat 2 39 0 419 242 167 0 chr3 3267579 3267699 -224256879 - MLT1H LTR MaLR -5 544 405 312 310 44 0 chr3 3268123 3268236 -224256342 + L2 LINE L2 3154 3271 -1 420 269 88 18 chr3 3268524 3268695 -224255883 + Charlie8 DNA MER1_type 85 267 -2150 206 209 90 45 chr3 3268942 3269009 -224255569 + MIR SINE MIR 105 174 -88 1665 171 32 20 chr3 3269149 3269247 -224255331 + L1MB7 LINE L1 5822 5917 -267 2471 105 19 8 chr3 3269247 3269618 -224254960 + THE1C LTR MaLR 1 375 0 1665 171 32 20 chr3 3269618 3269863 -224254715 + L1MB7 LINE L1 5917 6169 -15 3666 119 60 28 chr3 3269909 3270523 -224254055 + MER51A LTR ERV1 1 634 0 2114 183 47 10 chr3 3270542 3270947 -224253631 - MSTB LTR MaLR -6 420 1 2121 123 0 13 chr3 3271047 3271348 -224253230 - AluSg SINE Alu -13 297 1 229 380 71 5 chr3 3272311 3272495 -224252083 - L2 LINE L2 0 3313 3118 21 0 0 0 chr3 3273150 3273171 -224251407 + AT_rich Low_complexity Low_complexity 1 21 0 306 323 60 26 chr3 3273244 3273742 -224250836 - L1M4c LINE L1 -868 1875 1400 814 231 177 3 chr3 3273888 3274182 -224250396 - MLT1I LTR MaLR 0 409 65 2292 95 10 3 chr3 3274182 3274486 -224250092 - AluSq SINE Alu -7 306 1 457 343 122 34 chr3 3274631 3275098 -224249480 - L3 LINE CR1 -13 1564 1057 292 231 107 39 chr3 3275753 3276009 -224248569 + L1ME4a LINE L1 5536 5901 -220 2267 83 3 0 chr3 3278121 3278470 -224246108 - AluYb8 SINE Alu 0 350 1 189 0 0 0 chr3 3278640 3278661 -224245917 + (T)n Simple_repeat Simple_repeat 1 21 0 206 349 0 64 chr3 3278839 3278948 -224245630 + L2 LINE L2 2998 3099 -173 1967 138 14 0 chr3 3282297 3282580 -224241998 - AluSx SINE Alu -25 287 1 466 303 141 29 chr3 3283744 3284021 -224240557 - L2 LINE L2 -3 3310 3003 2160 98 3 3 chr3 3286122 3286409 -224238169 + AluSg SINE Alu 1 287 -23 2535 52 3 3 chr3 3287014 3287320 -224237258 + AluY SINE Alu 1 306 -5 1678 103 157 4 chr3 3287563 3287825 -224236753 + AluSq SINE Alu 2 303 0 2370 80 0 0 chr3 3288583 3288901 -224235677 - AluY SINE Alu 0 318 1 24 0 0 0 chr3 3289605 3289629 -224234949 + AT_rich Low_complexity Low_complexity 1 24 0 244 325 0 24 chr3 3291555 3291638 -224232940 + L3b LINE CR1 1250 1330 -253 239 304 173 52 chr3 3291665 3291856 -224232722 + MIR SINE MIR 1 214 -48 204 318 85 64 chr3 3291868 3292088 -224232490 + MIR SINE MIR 17 256 -6 315 333 21 21 chr3 3292797 3293034 -224231544 + HAL1 LINE L1 1424 1660 -847 2309 107 0 0 chr3 3293242 3293551 -224231027 + AluSq SINE Alu 1 309 -4 3757 154 20 70 chr3 3293569 3294434 -224230144 - L1MA9 LINE L1 0 6312 5492 446 80 0 93 chr3 3294436 3294511 -224230067 + L1MA9 LINE L1 5408 5475 -837 272 305 78 43 chr3 3294562 3294703 -224229875 - MER5B DNA MER1_type -28 150 5 21 36 0 0 chr3 3294721 3294749 -224229829 + AT_rich Low_complexity Low_complexity 1 28 0 385 178 100 0 chr3 3295165 3295255 -224229323 + L1MA9 LINE L1 6170 6268 -44 28 0 0 0 chr3 3295259 3295287 -224229291 + AT_rich Low_complexity Low_complexity 1 28 0 1178 206 95 27 chr3 3296077 3296339 -224228239 + AluJo SINE Alu 3 282 -30 857 327 107 52 chr3 3296345 3297615 -224226963 + L1M4 LINE L1 2652 3850 -2296 2272 39 32 0 chr3 3297615 3297898 -224226680 - AluY SINE Alu -19 292 1 857 327 107 52 chr3 3297898 3298239 -224226339 + L1M4 LINE L1 3850 4171 -1975 2492 55 0 0 chr3 3298239 3298547 -224226031 + AluY SINE Alu 1 308 -3 857 327 107 52 chr3 3298547 3298799 -224225779 + L1M4 LINE L1 4171 4619 -1527 249 248 50 40 chr3 3299322 3299423 -224225155 + L1M4 LINE L1 5675 5776 -408 605 203 144 20 chr3 3300099 3300252 -224224326 + MER5A DNA MER1_type 18 189 0 2884 88 2 0 chr3 3300363 3300759 -224223819 + L1PB2 LINE L1 5754 6150 -1 354 348 66 31 chr3 3300846 3301165 -224223413 - L2 LINE L2 -555 2759 2430 371 227 109 31 chr3 3301855 3301983 -224222595 + MIR SINE MIR 52 189 -73 23 0 0 0 chr3 3302043 3302066 -224222512 + AT_rich Low_complexity Low_complexity 1 23 0 1660 189 7 3 chr3 3302516 3302818 -224221760 - MLT1A1 LTR MaLR 0 365 63 2042 169 91 0 chr3 3302871 3303244 -224221334 - MSTA LTR MaLR -21 407 1 348 267 12 0 chr3 3303244 3303310 -224221268 - MLT1A1 LTR MaLR -305 69 3 332 299 28 28 chr3 3304235 3304379 -224220199 - L3 LINE CR1 -172 1405 1262 245 246 98 0 chr3 3304711 3304833 -224219745 - MER113 DNA MER1_type? -387 134 1 408 20 0 0 chr3 3305845 3305894 -224218684 + (TG)n Simple_repeat Simple_repeat 2 50 0 1292 161 0 5 chr3 3305895 3306112 -224218466 - MLT2C2 LTR ERVL -248 216 1 204 294 109 22 chr3 3306847 3306939 -224217639 + MIR SINE MIR 31 130 -78 1043 219 88 3 chr3 3307975 3308272 -224216306 - MER33 DNA MER1_type -1 323 2 286 269 157 60 chr3 3308442 3308658 -224215920 - MIR SINE MIR -6 256 20 196 308 117 25 chr3 3309673 3309793 -224214785 - MIR3 SINE MIR -74 134 4 224 100 25 0 chr3 3310467 3310507 -224214071 + (CA)n Simple_repeat Simple_repeat 2 42 0 283 239 30 0 chr3 3311263 3311330 -224213248 + L2 LINE L2 2481 2549 -765 448 169 48 32 chr3 3311330 3311454 -224213124 + LTR37A LTR ERV1 301 426 0 1745 158 3 52 chr3 3312172 3312482 -224212096 - AluJb SINE Alu -12 300 6 1087 237 71 40 chr3 3312745 3313099 -224211479 + MLT1A1 LTR MaLR 1 365 0 7448 36 7 1 chr3 3314135 3315623 -224208955 - L1PA5 LINE L1 -4 6150 4659 195 69 0 0 chr3 3318504 3318533 -224206045 + (TG)n Simple_repeat Simple_repeat 2 30 0 386 125 0 14 chr3 3319007 3319079 -224205499 + (CA)n Simple_repeat Simple_repeat 1 71 0 787 121 0 57 chr3 3319292 3319433 -224205145 - FLAM_A SINE Alu 0 133 1 207 235 0 0 chr3 3319891 3319942 -224204636 + (TA)n Simple_repeat Simple_repeat 1 51 0 5828 35 4 0 chr3 3319942 3320647 -224203931 - L1PA5 LINE L1 -11 6143 5436 1755 32 0 0 chr3 3320647 3320866 -224203712 + L1P LINE L1 5152 5370 -776 21 0 0 0 chr3 3321019 3321040 -224203538 + AT_rich Low_complexity Low_complexity 1 21 0 456 285 37 49 chr3 3321593 3321839 -224202739 + L1MC4 LINE L1 7549 7779 -216 401 208 0 26 chr3 3321839 3321916 -224202662 + MER7A DNA MER2_type 2 76 -272 * 1860 156 23 7 chr3 3321913 3322220 -224202358 + MER7A DNA MER2_type 36 345 -1 358 188 115 79 chr3 3322238 3322382 -224202196 + L1MC4 LINE L1 7780 7932 -110 1816 173 10 0 chr3 3322382 3322683 -224201895 + AluJb SINE Alu 1 304 -8 358 188 115 79 chr3 3322683 3322703 -224201875 + L1MC4 LINE L1 7932 7950 -92 2126 202 49 14 chr3 3322717 3323163 -224201415 + MLT1C LTR MaLR 1 462 -5 2814 167 6 28 chr3 3323178 3323717 -224200861 - L1MA7 LINE L1 -200 6091 5565 200 191 0 24 chr3 3324698 3324740 -224199838 - L2 LINE L2 -8 3305 3265 2294 96 3 10 chr3 3324963 3325277 -224199301 + AluSp SINE Alu 1 312 -1 351 318 59 42 chr3 3325620 3325859 -224198719 - MIR SINE MIR -13 249 7 1963 127 3 42 chr3 3325936 3326243 -224198335 + AluSx SINE Alu 3 297 -15 22 0 0 0 chr3 3326832 3326854 -224197724 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr3 3327527 3327556 -224197022 + (TG)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr3 3327626 3327652 -224196926 + AT_rich Low_complexity Low_complexity 1 26 0 674 318 173 41 chr3 3327772 3328499 -224196079 - L2 LINE L2 -5 3308 2462 290 244 47 71 chr3 3328504 3328574 -224196004 + MIR SINE MIR 85 152 -110 865 191 30 78 chr3 3328574 3328804 -224195774 + MER20 DNA MER1_type 1 219 0 290 244 47 71 chr3 3328804 3328860 -224195718 + MIR SINE MIR 152 208 -54 25 0 0 0 chr3 3329946 3329971 -224194607 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 3330160 3330184 -224194394 + AT_rich Low_complexity Low_complexity 1 24 0 350 280 65 11 chr3 3330548 3330641 -224193937 + MIR SINE MIR 30 127 -81 305 389 0 16 chr3 3330826 3330952 -224193626 - MIR3 SINE MIR -51 157 34 1943 127 7 39 chr3 3331026 3331334 -224193244 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 3331342 3331363 -224193215 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 3333148 3333185 -224191393 + AT_rich Low_complexity Low_complexity 1 37 0 32 67 0 0 chr3 3333416 3333476 -224191102 + AT_rich Low_complexity Low_complexity 1 60 0 236 127 16 48 chr3 3333531 3333594 -224190984 + (TATAA)n Simple_repeat Simple_repeat 1 61 0 246 347 116 0 chr3 3333753 3333848 -224190730 + L2 LINE L2 3146 3251 -21 6446 134 54 14 chr3 3335025 3336139 -224188439 + Tigger1 DNA MER2_type 1 1158 -1260 6308 150 17 18 chr3 3336141 3337260 -224187318 + Tigger1 DNA MER2_type 1301 2418 0 283 214 14 14 chr3 3337260 3337330 -224187248 - MLT1J2 LTR MaLR -5 445 376 557 266 77 27 chr3 3337361 3337583 -224186995 - MLT1J2 LTR MaLR -159 291 59 190 213 85 0 chr3 3337609 3337656 -224186922 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 3337937 3338220 -224186358 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 3338347 3338484 -224186094 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 3338570 3338735 -224185843 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 3339181 3339581 -224184997 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 3339863 3339885 -224184693 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 3340169 3340475 -224184103 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 3340520 3340872 -224183706 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 3340921 3341079 -224183499 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 3341352 3341513 -224183065 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 3343116 3343148 -224181430 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 3343510 3343797 -224180781 - L1ME3A LINE L1 -341 5829 5521 2219 108 0 7 chr3 3343801 3344108 -224180470 + AluY SINE Alu 1 305 -6 4658 78 8 2 chr3 3344120 3344752 -224179826 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 3345922 3345980 -224178598 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 3346047 3346185 -224178393 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 3346197 3346331 -224178247 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 3346574 3346752 -224177826 + FAM SINE Alu 1 174 -1 189 292 0 21 chr3 3347371 3347419 -224177159 + MER5A DNA MER1_type 102 148 -41 21 0 0 0 chr3 3347838 3347859 -224176719 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 3348780 3348975 -224175603 + MIR SINE MIR 59 261 -1 3748 193 40 29 chr3 3349571 3350728 -224173850 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 3350764 3350827 -224173751 + L1MB7 LINE L1 6112 6174 -10 380 292 84 78 chr3 3351332 3351654 -224172924 + LTR16C LTR ERVL 168 491 0 287 253 67 13 chr3 3351678 3351753 -224172825 + MIR SINE MIR 87 165 -97 998 175 74 23 chr3 3351754 3351971 -224172607 + MER68 LTR ERV1 1 228 -334 231 289 13 0 chr3 3352171 3352247 -224172331 - LTR48 LTR ERV1 -332 455 379 953 182 91 0 chr3 3352283 3352470 -224172108 - MER34C LTR ERV1 -381 204 1 791 225 41 118 chr3 3352471 3352836 -224171742 + MER68 LTR ERV1 226 562 0 291 265 36 0 chr3 3352841 3352924 -224171654 + MIR SINE MIR 167 252 -10 2240 59 3 40 chr3 3353069 3353373 -224171205 + AluY SINE Alu 1 293 -18 2045 109 0 7 chr3 3353434 3353753 -224170825 + AluSg1 SINE Alu 2 318 0 277 303 49 17 chr3 3354090 3354218 -224170360 + MIR SINE MIR 18 139 -69 709 286 35 17 chr3 3355041 3355272 -224169306 - MIR SINE MIR -26 236 2 1252 242 43 3 chr3 3356392 3356718 -224167860 + MER58B DNA MER1_type 2 340 -1 237 289 74 8 chr3 3356765 3356886 -224167692 - MIR SINE MIR -42 220 92 256 178 93 124 chr3 3357883 3358012 -224166566 - MIR SINE MIR -5 257 133 196 319 264 0 chr3 3358570 3358661 -224165917 - MIR SINE MIR -69 139 25 1906 153 0 10 chr3 3358907 3359214 -224165364 + AluJo SINE Alu 5 308 -4 643 189 31 20 chr3 3359214 3359410 -224165168 - MER33 DNA MER1_type -19 344 147 383 164 0 41 chr3 3359406 3359479 -224165099 - MER33 DNA MER1_type -250 74 5 * 21 36 0 0 chr3 3360437 3360465 -224164113 + AT_rich Low_complexity Low_complexity 1 28 0 243 240 60 40 chr3 3360634 3360734 -224163844 - MIR SINE MIR -7 255 154 463 287 67 22 chr3 3360777 3361000 -224163578 - L1ME LINE L1 -506 5615 5383 241 301 143 23 chr3 3361896 3362029 -224162549 - MIR3 SINE MIR -2 206 58 1820 105 35 0 chr3 3362335 3362592 -224161986 + AluSq SINE Alu 39 304 -9 25 0 0 0 chr3 3363613 3363638 -224160940 + AT_rich Low_complexity Low_complexity 1 25 0 252 293 96 3 chr3 3364433 3364588 -224159990 + MIR SINE MIR 21 190 -18 497 354 0 18 chr3 3365097 3365326 -224159252 - L2 LINE L2 -357 2957 2733 882 180 12 0 chr3 3365528 3365695 -224158883 + FRAM SINE Alu 1 168 -8 22 35 0 0 chr3 3366374 3366403 -224158175 + AT_rich Low_complexity Low_complexity 1 29 0 2360 31 7 0 chr3 3366936 3367225 -224157353 - AluY SINE Alu -20 291 1 248 313 70 0 chr3 3367713 3367828 -224156750 + MIR3 SINE MIR 62 184 -24 219 360 61 26 chr3 3368636 3368750 -224155828 + L3 LINE CR1 1459 1576 -1 274 260 26 0 chr3 3368763 3368840 -224155738 - MER116 DNA Mariner 0 80 2 22 0 0 0 chr3 3368967 3368989 -224155589 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 3369312 3369343 -224155235 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3 3370419 3370443 -224154135 + AT_rich Low_complexity Low_complexity 1 24 0 438 72 87 14 chr3 3370638 3370707 -224153871 - L1PA11 LINE L1 -4 6170 6097 1200 87 174 0 chr3 3371625 3371821 -224152757 - MER30 DNA MER1_type 0 230 1 1707 139 49 69 chr3 3372222 3372568 -224152010 - MER44D DNA MER2_type 0 609 1 1219 200 69 7 chr3 3372582 3372887 -224151691 + MER33 DNA MER1_type 1 324 0 182 243 0 0 chr3 3373530 3373567 -224151011 - L2 LINE L2 -9 3263 3227 224 247 41 27 chr3 3376086 3376159 -224148419 + L2 LINE L2 2927 3000 -313 522 283 87 6 chr3 3376199 3376372 -224148206 + L2 LINE L2 3119 3305 -8 499 154 11 0 chr3 3377250 3377341 -224147237 + L1MA5A LINE L1 6204 6295 -2 263 329 12 24 chr3 3378459 3378544 -224146034 - MIR SINE MIR -109 99 16 207 258 32 16 chr3 3378612 3378674 -224145904 + MIR SINE MIR 95 157 -105 930 97 148 0 chr3 3378675 3378830 -224145748 + L1MA5A LINE L1 6075 6252 -45 220 220 0 0 chr3 3380179 3380229 -224144349 + (TTTAA)n Simple_repeat Simple_repeat 5 54 0 903 196 0 0 chr3 3381837 3382005 -224142573 - AluJb SINE Alu -7 305 138 6986 55 8 0 chr3 3382091 3383474 -224141104 - L1PA7 LINE L1 -1 6153 4766 9525 99 1 4 chr3 3383474 3384852 -224139726 + L1P3 LINE L1 2477 3849 -2297 7054 86 11 6 chr3 3384837 3385982 -224138596 + L1P3 LINE L1 4335 5473 -681 * 1983 120 3 7 chr3 3385982 3386265 -224138313 + AluSg SINE Alu 1 282 -28 189 0 0 0 chr3 3386265 3386286 -224138292 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 7054 86 11 6 chr3 3386286 3386568 -224138010 + L1P3 LINE L1 5472 5766 -388 21 0 0 0 chr3 3386974 3386995 -224137583 + AT_rich Low_complexity Low_complexity 1 21 0 388 328 17 0 chr3 3386995 3387114 -224137464 + L2 LINE L2 3152 3272 -41 351 274 156 30 chr3 3387141 3387276 -224137302 - MIR SINE MIR -41 221 70 216 193 91 80 chr3 3387560 3387648 -224136930 - MIR SINE MIR -113 149 61 2128 119 39 33 chr3 3387648 3388010 -224136568 - THE1B LTR MaLR 0 364 1 781 196 78 44 chr3 3388390 3388594 -224135984 - MER20 DNA MER1_type -4 215 5 2009 123 0 19 chr3 3388894 3389231 -224135347 - AluSx SINE Alu 0 331 1 858 281 123 28 chr3 3390932 3391331 -224133247 - MLT1J LTR MaLR -4 507 71 184 359 123 0 chr3 3391422 3391528 -224133050 + L2 LINE L2 3151 3269 -3 6796 170 25 19 chr3 3391697 3393066 -224131512 - L1MA4 LINE L1 -11 6289 4903 3080 102 5 0 chr3 3393066 3393506 -224131072 - L1PB1 LINE L1 -1 6150 5709 6796 170 25 19 chr3 3393506 3394497 -224130081 - L1MA4 LINE L1 -1397 4903 3919 268 177 16 32 chr3 3394673 3394735 -224129843 + MARNA DNA Mariner 301 361 -225 195 253 67 80 chr3 3395785 3395860 -224128718 - L3b LINE CR1 0 1583 1510 355 227 113 78 chr3 3396130 3396271 -224128307 - L2 LINE L2 -731 2583 2438 185 306 54 54 chr3 3396280 3396391 -224128187 - MIR SINE MIR -7 255 145 200 287 230 0 chr3 3396654 3396741 -224127837 + L2 LINE L2 3188 3294 -19 260 158 18 0 chr3 3396834 3396891 -224127687 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 2624 7 0 0 chr3 3398099 3398449 -224126129 - AluYb8 SINE Alu 0 350 1 859 130 7 0 chr3 3398455 3398593 -224125985 - L1PA15 LINE L1 -1 6164 6026 532 311 12 6 chr3 3399584 3399748 -224124830 + MIR SINE MIR 30 194 -68 309 214 36 71 chr3 3400135 3400247 -224124331 + L1ME4a LINE L1 5816 5923 -198 26 64 0 0 chr3 3400253 3400300 -224124278 + AT_rich Low_complexity Low_complexity 1 47 0 237 192 61 40 chr3 3400368 3400467 -224124111 - L1ME4a LINE L1 0 6121 6021 1971 132 0 0 chr3 3402301 3402581 -224121997 + AluSx SINE Alu 1 280 -32 270 0 0 0 chr3 3402583 3402613 -224121965 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2299 107 0 0 chr3 3403840 3404148 -224120430 + AluSg SINE Alu 1 308 -2 2094 128 0 3 chr3 3404369 3404674 -224119904 - AluSx SINE Alu -8 304 1 1444 74 0 0 chr3 3404921 3405097 -224119481 + AluSg/x SINE Alu 86 261 -49 538 287 148 26 chr3 3406839 3407069 -224117509 + MIR SINE MIR 5 262 0 303 272 129 0 chr3 3407674 3407821 -224116757 + L1MC4 LINE L1 7505 7670 -372 224 135 0 19 chr3 3407941 3407993 -224116585 + (TA)n Simple_repeat Simple_repeat 2 52 0 407 257 6 6 chr3 3408065 3408240 -224116338 + (TA)n Simple_repeat Simple_repeat 1 175 0 878 141 0 21 chr3 3408316 3408458 -224116120 - FLAM_C SINE Alu -2 141 3 292 271 25 76 chr3 3408660 3408778 -224115800 - MIR SINE MIR -139 123 12 274 282 182 9 chr3 3409454 3409564 -224115014 + MIR SINE MIR 108 236 -26 2360 161 50 27 chr3 3410859 3411374 -224113204 + L1MB7 LINE L1 5655 6181 -3 296 253 111 52 chr3 3413890 3414256 -224110322 - L1ME4a LINE L1 -93 6028 5536 481 343 122 34 chr3 3414909 3415376 -224109202 + L3 LINE CR1 1057 1564 -13 1710 177 0 3 chr3 3415520 3415987 -224108591 + AluJo SINE Alu 1 466 0 1465 39 0 0 chr3 3415808 3416030 -224108548 + (GAA)n Simple_repeat Simple_repeat 2 223 0 2556 147 19 2 chr3 3416352 3416775 -224107803 - MSTB1 LTR MaLR -2 430 1 25 51 0 0 chr3 3417361 3417400 -224107178 + AT_rich Low_complexity Low_complexity 1 39 0 529 276 17 17 chr3 3417550 3417724 -224106854 + MIR SINE MIR 88 261 -1 696 282 18 26 chr3 3418269 3418496 -224106082 + L1MEc LINE L1 55 279 -6117 227 355 48 0 chr3 3418822 3418946 -224105632 - L2 LINE L2 -469 2845 2716 225 0 0 0 chr3 3419914 3419939 -224104639 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2053 117 0 7 chr3 3419945 3420235 -224104343 - AluSx SINE Alu -23 289 2 198 317 35 103 chr3 3420447 3420592 -224103986 + L2 LINE L2 3179 3313 0 2215 253 67 13 chr3 3420632 3421321 -224103257 - L1ME3 LINE L1 -8 6154 5429 459 239 103 19 chr3 3421419 3421574 -224103004 + MIR SINE MIR 95 262 0 886 197 121 10 chr3 3421644 3421842 -224102736 + MIR SINE MIR 43 262 0 915 256 183 28 chr3 3422043 3422469 -224102109 - MLT1H LTR MaLR 0 549 58 1671 163 13 3 chr3 3422554 3422855 -224101723 + AluJb SINE Alu 6 309 -3 8112 39 2 0 chr3 3422876 3424642 -224099936 - L1PA4 LINE L1 -1 6154 4389 317 298 37 42 chr3 3425667 3425882 -224098696 + L2 LINE L2 3021 3234 -79 1790 158 3 10 chr3 3425920 3426230 -224098348 - AluJb SINE Alu -2 310 3 271 309 0 0 chr3 3426233 3426317 -224098261 + L2 LINE L2 3225 3308 -5 1002 171 32 3 chr3 3427529 3427731 -224096847 - L1PB3 LINE L1 -10 6141 5940 22 0 0 0 chr3 3427749 3427771 -224096807 + AT_rich Low_complexity Low_complexity 1 22 0 2242 91 7 3 chr3 3428761 3429069 -224095509 - AluSc SINE Alu 0 309 1 183 184 0 0 chr3 3430188 3430226 -224094352 + (TG)n Simple_repeat Simple_repeat 2 39 0 2070 119 3 0 chr3 3430349 3430642 -224093936 + AluSg SINE Alu 1 294 -16 206 254 55 0 chr3 3431033 3431088 -224093490 + L2 LINE L2 3252 3309 -4 287 360 71 20 chr3 3431202 3431399 -224093179 - MIR SINE MIR -26 236 30 1497 189 107 42 chr3 3431402 3431804 -224092774 - L1MB8 LINE L1 -7 6171 5744 4007 187 30 23 chr3 3433837 3434739 -224089839 - L1MB7 LINE L1 -21 6399 5492 6416 230 57 61 chr3 3434749 3435284 -224089294 - L1MB7 LINE L1 -1420 4962 4426 180 0 0 0 chr3 3435284 3435304 -224089274 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6416 230 57 61 chr3 3435304 3435354 -224089224 - L1MB7 LINE L1 -1956 4426 4377 2433 57 0 0 chr3 3435354 3435652 -224088926 + AluY SINE Alu 1 298 -13 6416 230 57 61 chr3 3435652 3437723 -224086855 - L1MB7 LINE L1 -2005 4377 2310 338 308 45 0 chr3 3437818 3437951 -224086627 - Charlie8 DNA MER1_type -2207 210 72 379 302 101 13 chr3 3438391 3438540 -224086038 + MIR3 SINE MIR 38 199 -9 255 240 0 0 chr3 3440147 3440197 -224084381 + L2 LINE L2 3264 3313 0 747 165 41 0 chr3 3440265 3440386 -224084192 + AluJo SINE Alu 34 159 -153 318 301 55 55 chr3 3441083 3441481 -224083097 + L1M4 LINE L1 2900 3297 -2849 24 67 0 0 chr3 3442540 3442585 -224081993 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 3443228 3443250 -224081328 + AT_rich Low_complexity Low_complexity 1 22 0 728 241 29 0 chr3 3446266 3446436 -224078142 + FAM SINE Alu 1 175 0 1143 195 44 12 chr3 3446863 3447114 -224077464 - AluJo SINE Alu -26 286 28 236 262 0 0 chr3 3447142 3447184 -224077394 - AluJo SINE Alu -260 43 2 237 363 65 0 chr3 3447348 3447472 -224077106 - MIR SINE MIR 0 262 131 225 206 95 0 chr3 3447562 3447625 -224076953 + Tigger2 DNA MER2_type 1 69 -2649 * 2376 127 94 2 chr3 3447623 3448025 -224076553 + Tigger2 DNA MER2_type 2280 2718 0 183 316 53 79 chr3 3448256 3448446 -224076132 + MIR3 SINE MIR 6 190 -18 497 312 75 17 chr3 3449443 3449616 -224074962 + MIR SINE MIR 6 188 -74 2521 167 42 10 chr3 3450406 3450910 -224073668 + L1MB4 LINE L1 5659 6178 -2 1040 211 5 5 chr3 3452167 3452357 -224072221 - MER20 DNA MER1_type -1 218 29 1980 188 54 15 chr3 3453207 3453670 -224070908 + Charlie1b DNA MER1_type 2 482 -41 22 0 0 0 chr3 3453940 3453962 -224070616 + AT_rich Low_complexity Low_complexity 1 22 0 327 213 63 39 chr3 3453976 3454103 -224070475 + Charlie7 DNA MER1_type 2470 2599 -13 1918 202 42 77 chr3 3454190 3454686 -224069892 + MLT2B1 LTR ERVL 1 478 -42 387 0 0 0 chr3 3454686 3454729 -224069849 + (CA)n Simple_repeat Simple_repeat 2 44 0 1918 202 42 77 chr3 3454729 3454762 -224069816 + MLT2B1 LTR ERVL 478 511 -9 379 330 45 16 chr3 3454976 3455122 -224069456 - MIR SINE MIR -62 146 7 282 29 0 0 chr3 3455334 3455369 -224069209 + (TG)n Simple_repeat Simple_repeat 2 36 0 1234 235 66 28 chr3 3456114 3456337 -224068241 + MER39 LTR ERV1 300 544 -163 2282 35 45 3 chr3 3456337 3456627 -224067951 + AluY SINE Alu 1 302 -9 1234 235 66 28 chr3 3456627 3456765 -224067813 + MER39 LTR ERV1 544 675 -32 1310 177 170 0 chr3 3456796 3457090 -224067488 - MER2 DNA MER2_type 0 344 1 321 279 137 0 chr3 3457092 3457275 -224067303 + MER113 DNA MER1_type? 6 213 -308 227 280 13 30 chr3 3457848 3457933 -224066645 + MIR SINE MIR 85 145 -63 283 284 0 12 chr3 3457954 3458035 -224066543 - MIR SINE MIR -21 241 162 2355 211 78 47 chr3 3458057 3458777 -224065801 - MER21B LTR ERV1 -30 833 1 410 269 119 15 chr3 3458794 3458928 -224065650 - MIR SINE MIR -114 148 1 497 218 1 48 chr3 3459593 3459724 -224064854 - MER20 DNA MER1_type -64 155 32 2027 155 21 15 chr3 3459762 3460097 -224064481 + LTR32 LTR ERVL 15 351 -120 859 191 30 6 chr3 3460129 3460297 -224064281 + LTR32 LTR ERVL 300 471 0 2092 36 0 33 chr3 3460817 3461091 -224063487 + L1PA3 LINE L1 5888 6152 -3 412 336 80 29 chr3 3462302 3462374 -224062204 - MIR SINE MIR 0 262 195 2045 130 0 3 chr3 3462374 3462659 -224061919 - AluSx SINE Alu -28 284 1 412 336 80 29 chr3 3462659 3462824 -224061754 - MIR SINE MIR -67 195 13 296 283 107 6 chr3 3463514 3463673 -224060905 - MIR SINE MIR -1 261 87 263 280 32 21 chr3 3464110 3464203 -224060375 - L2 LINE L2 0 3272 3179 388 354 32 6 chr3 3465702 3465860 -224058718 - MIR SINE MIR -86 176 15 1428 216 71 31 chr3 3467958 3468407 -224056171 - MLT1C LTR MaLR 0 467 1 1036 200 16 5 chr3 3468688 3468878 -224055700 + AluJb SINE Alu 89 280 -32 234 0 0 0 chr3 3468886 3468912 -224055666 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr3 3468911 3468941 -224055637 + (GA)n Simple_repeat Simple_repeat 2 31 0 426 217 167 0 chr3 3469011 3469131 -224055447 - MLT1H LTR MaLR -5 544 405 312 310 44 0 chr3 3469555 3469668 -224054910 + L2 LINE L2 3154 3271 -1 420 269 88 18 chr3 3469956 3470127 -224054451 + Charlie8 DNA MER1_type 74 256 -2161 206 209 90 45 chr3 3470374 3470441 -224054137 + MIR SINE MIR 105 174 -88 1669 171 32 20 chr3 3470581 3470679 -224053899 + L1MB7 LINE L1 5822 5917 -267 2447 108 19 8 chr3 3470679 3471050 -224053528 + THE1C LTR MaLR 1 375 0 1669 171 32 20 chr3 3471050 3471295 -224053283 + L1MB7 LINE L1 5917 6169 -15 3618 124 60 28 chr3 3471341 3471955 -224052623 + MER51A LTR ERV1 1 634 0 2114 183 47 10 chr3 3471974 3472379 -224052199 - MSTB LTR MaLR -6 420 1 2117 120 0 13 chr3 3472479 3472778 -224051800 - AluSg SINE Alu -15 295 1 229 380 71 5 chr3 3473741 3473925 -224050653 - L2 LINE L2 0 3313 3118 21 0 0 0 chr3 3474580 3474601 -224049977 + AT_rich Low_complexity Low_complexity 1 21 0 340 322 50 26 chr3 3474677 3475171 -224049407 - L1MEc LINE L1 -868 1708 1284 870 231 126 40 chr3 3475313 3475611 -224048967 - MLT1I LTR MaLR 0 409 71 2266 104 7 0 chr3 3475611 3475910 -224048668 - AluSx SINE Alu -11 301 1 870 231 126 40 chr3 3475910 3475984 -224048594 - MLT1I LTR MaLR -338 71 5 309 307 12 37 chr3 3476188 3476351 -224048227 - L1MEc LINE L1 -5359 846 688 415 333 64 64 chr3 3476560 3476905 -224047673 - L1MEc LINE L1 -5771 434 90 311 360 27 0 chr3 3477033 3477144 -224047434 + MIR3 SINE MIR 48 161 -47 187 269 115 0 chr3 3478451 3478529 -224046049 - L2 LINE L2 -2489 825 739 267 233 60 69 chr3 3479444 3479560 -224045018 - MIR3 SINE MIR -11 197 83 916 179 25 0 chr3 3479790 3479952 -224044626 - Tigger7 DNA MER2_type -567 166 1 1540 137 92 30 chr3 3479954 3480289 -224044289 + L1MA7 LINE L1 5926 6281 -10 814 108 0 0 chr3 3480309 3480420 -224044158 + AluY SINE Alu 1 111 -200 4175 168 105 54 chr3 3480420 3481589 -224042989 + pTR5 LTR ERV1 743 2027 -411 280 274 11 0 chr3 3481592 3481687 -224042891 + LTR30 LTR ERV1 548 643 -79 1242 90 50 20 chr3 3481708 3481908 -224042670 + LTR12 LTR ERV1 486 691 -23 1543 62 0 19 chr3 3481915 3482126 -224042452 + AluY SINE Alu 102 308 -3 352 309 73 57 chr3 3482176 3482422 -224042156 - MIR SINE MIR -11 251 2 2116 116 0 0 chr3 3482449 3482742 -224041836 + AluSq SINE Alu 1 293 -20 206 373 0 27 chr3 3483454 3483529 -224041049 - MIR SINE MIR -109 99 27 229 188 59 71 chr3 3483592 3483677 -224040901 - LTR67 LTR ERVL -15 542 459 4370 105 14 0 chr3 3484331 3484957 -224039621 - MER41B LTR ERV1 0 635 1 407 279 162 13 chr3 3485239 3485393 -224039185 - MER5A DNA MER1_type 0 189 13 278 320 47 16 chr3 3485451 3485579 -224038999 - MIR3 SINE MIR -40 168 37 432 264 97 7 chr3 3486438 3486593 -224037985 + MIR SINE MIR 84 252 -10 2246 96 0 0 chr3 3487738 3488039 -224036539 - AluY SINE Alu -10 301 1 2369 116 11 21 chr3 3488706 3489085 -224035493 - THE1C LTR MaLR 0 375 1 1075 200 23 5 chr3 3489492 3489707 -224034871 + MER20 DNA MER1_type 1 219 0 31 26 0 0 chr3 3489864 3489902 -224034676 + AT_rich Low_complexity Low_complexity 1 38 0 294 284 167 59 chr3 3490001 3490423 -224034155 - L2 LINE L2 -52 3220 2764 204 318 85 64 chr3 3491458 3491678 -224032900 - MIR SINE MIR -6 256 17 239 304 173 52 chr3 3491690 3491881 -224032697 - MIR SINE MIR -48 214 1 244 325 0 24 chr3 3491908 3491991 -224032587 - L3b LINE CR1 -253 1330 1250 24 0 0 0 chr3 3493918 3493942 -224030636 + AT_rich Low_complexity Low_complexity 1 24 0 2419 75 0 0 chr3 3494646 3494964 -224029614 + AluY SINE Alu 1 318 0 1350 149 164 11 chr3 3495722 3495984 -224028594 - AluSq SINE Alu 0 303 2 2543 46 3 3 chr3 3496227 3496531 -224028047 - AluY SINE Alu -7 304 1 2174 94 3 3 chr3 3497135 3497422 -224027156 - AluSg SINE Alu -23 287 1 466 303 141 29 chr3 3499523 3499800 -224024778 + L2 LINE L2 3003 3310 -3 1967 138 14 0 chr3 3500964 3501247 -224023331 + AluSx SINE Alu 1 287 -25 206 349 0 64 chr3 3504597 3504706 -224019872 - L2 LINE L2 -173 3099 2998 2471 79 0 0 chr3 3505071 3505375 -224019203 + AluSc SINE Alu 1 304 -5 1464 131 36 0 chr3 3505862 3506084 -224018494 - MER30 DNA MER1_type 0 230 1 393 323 31 26 chr3 3506527 3506722 -224017856 - MLT1J1 LTR MaLR -249 197 2 183 250 89 0 chr3 3506738 3506794 -224017784 - L2 LINE L2 -5 3308 3248 204 198 20 40 chr3 3507380 3507481 -224017097 + T-rich Low_complexity Low_complexity 2 100 0 246 279 18 81 chr3 3507580 3507691 -224016887 + MIR SINE MIR 49 152 -56 369 302 6 52 chr3 3507829 3507968 -224016610 + MIR SINE MIR 32 163 -99 2303 96 0 7 chr3 3507968 3508271 -224016307 + AluSp SINE Alu 1 301 -12 369 302 6 52 chr3 3508271 3508303 -224016275 + MIR SINE MIR 163 195 -67 2437 74 0 3 chr3 3509192 3509502 -224015076 - AluY SINE Alu -2 309 1 221 269 216 15 chr3 3509658 3509792 -224014786 + MIR SINE MIR 74 234 -28 28 71 0 0 chr3 3509943 3509999 -224014579 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr3 3510116 3510140 -224014438 + AT_rich Low_complexity Low_complexity 1 24 0 2260 60 46 0 chr3 3510370 3510653 -224013925 - AluSg SINE Alu -14 296 1 2411 70 0 3 chr3 3510992 3511290 -224013288 + AluSq SINE Alu 1 297 -16 314 379 0 0 chr3 3511423 3511526 -224013052 - L3 LINE CR1 -40 1537 1435 213 205 0 0 chr3 3511531 3511570 -224013008 + (ATG)n Simple_repeat Simple_repeat 1 39 0 579 275 71 6 chr3 3511609 3511791 -224012787 - MIR SINE MIR -63 199 6 492 149 45 22 chr3 3511811 3512040 -224012538 + CT-rich Low_complexity Low_complexity 1 234 0 259 192 58 0 chr3 3512094 3512146 -224012432 - Tigger5 DNA MER2_type -2268 55 1 296 305 34 17 chr3 3512271 3512389 -224012189 + MIR SINE MIR 142 261 -1 294 29 0 0 chr3 3512954 3512989 -224011589 + (TG)n Simple_repeat Simple_repeat 2 36 0 202 50 0 100 chr3 3513434 3513474 -224011104 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 236 293 38 57 chr3 3513574 3513647 -224010931 + L2 LINE L2 3169 3241 -31 1652 207 81 29 chr3 3513647 3514091 -224010487 - MLT1C LTR MaLR 0 467 1 236 293 38 57 chr3 3514091 3514123 -224010455 + L2 LINE L2 3241 3272 0 1847 164 0 0 chr3 3516762 3517070 -224007508 + AluSx SINE Alu 1 308 0 2361 75 0 10 chr3 3517075 3517370 -224007208 + AluSx SINE Alu 1 292 -20 206 300 135 38 chr3 3517531 3517768 -224006810 + L2 LINE L2 2933 3192 -121 260 351 0 0 chr3 3517811 3517888 -224006690 + L2 LINE L2 3180 3256 -57 2035 211 130 12 chr3 3517888 3518415 -224006163 + L1MC4 LINE L1 7306 7926 -116 324 0 0 0 chr3 3518415 3518451 -224006127 + (TG)n Simple_repeat Simple_repeat 2 37 0 2035 211 130 12 chr3 3518451 3518577 -224006001 + L1MC4 LINE L1 7926 8036 -6 1236 159 68 0 chr3 3520711 3520962 -224003616 - L1MA6 LINE L1 0 6300 6033 421 143 0 0 chr3 3520998 3521061 -224003517 - MLT1C LTR MaLR -2 465 403 258 136 0 0 chr3 3521061 3521105 -224003473 - L1MA6 LINE L1 -224 6076 6033 1938 196 58 18 chr3 3521138 3521587 -224002991 - MLT1C LTR MaLR 0 467 1 280 109 0 0 chr3 3522152 3522198 -224002380 + MADE1 DNA Mariner 1 46 -34 1789 271 86 31 chr3 3522651 3522984 -224001594 + L1ME2 LINE L1 5372 5685 -479 2123 129 7 0 chr3 3522984 3523286 -224001292 - AluSx SINE Alu -8 304 1 1789 271 86 31 chr3 3523286 3523639 -224000939 + L1ME2 LINE L1 5685 6104 -60 2038 153 25 11 chr3 3523639 3524005 -224000573 - L1PA16 LINE L1 -4 6162 5792 1789 271 86 31 chr3 3524005 3524060 -224000518 + L1ME2 LINE L1 6104 6155 -9 1413 203 53 4 chr3 3524243 3524524 -224000054 - AluJb SINE Alu -17 295 1 206 108 54 0 chr3 3527591 3527628 -223996950 + T-rich Low_complexity Low_complexity 6 44 0 554 280 52 28 chr3 3527665 3527876 -223996702 + MIR SINE MIR 34 249 -13 266 209 0 77 chr3 3528492 3528583 -223995995 + L1MC4 LINE L1 6612 6695 -1347 393 22 0 0 chr3 3528604 3528650 -223995928 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr3 3528882 3528904 -223995674 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 3529043 3529082 -223995496 + AT_rich Low_complexity Low_complexity 1 39 0 294 305 169 0 chr3 3529413 3529531 -223995047 - MIR3 SINE MIR -39 169 32 1307 167 25 21 chr3 3530615 3530897 -223993681 - L1MA4 LINE L1 -9 6291 6009 2272 147 78 40 chr3 3531118 3531568 -223993010 - MLT1C LTR MaLR 0 467 1 239 333 45 58 chr3 3531935 3532091 -223992487 - MIR3 SINE MIR -95 113 4 1818 220 44 80 chr3 3532329 3532981 -223991597 - MLT1E2 LTR MaLR 0 626 1 2974 218 189 21 chr3 3533432 3533786 -223990792 + L1MC4a LINE L1 6610 6903 -905 447 19 0 0 chr3 3533786 3533838 -223990740 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 2974 218 189 21 chr3 3533838 3533940 -223990638 + L1MC4a LINE L1 6903 6987 -821 1735 190 0 28 chr3 3533940 3534261 -223990317 + AluJb SINE Alu 1 312 0 2974 218 189 21 chr3 3534261 3534820 -223989758 + L1MC4a LINE L1 6987 7797 -11 224 323 56 10 chr3 3534821 3534919 -223989659 + MIR SINE MIR 53 142 -66 223 363 105 0 chr3 3534957 3535081 -223989497 + MIR SINE MIR 1 137 -125 317 298 44 9 chr3 3536989 3537103 -223987475 - MIR3 SINE MIR -10 198 81 2359 94 0 0 chr3 3537439 3537746 -223986832 - AluY SINE Alu -4 307 1 244 226 32 11 chr3 3537977 3538070 -223986508 + (TA)n Simple_repeat Simple_repeat 2 96 0 1503 114 55 4 chr3 3539301 3539538 -223985040 + L1PA10 LINE L1 5914 6162 -6 205 51 51 0 chr3 3539827 3539866 -223984712 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 1447 244 29 12 chr3 3540021 3540431 -223984147 - L1ME3 LINE L1 -1 6161 5745 2246 94 0 3 chr3 3540454 3540752 -223983826 - AluSq SINE Alu -16 297 1 515 323 106 0 chr3 3540964 3541199 -223983379 + MIR SINE MIR 3 262 0 2307 92 10 0 chr3 3541746 3542040 -223982538 - AluSx SINE Alu -15 297 1 24 32 0 0 chr3 3542044 3542075 -223982503 + AT_rich Low_complexity Low_complexity 1 31 0 240 285 46 15 chr3 3542945 3543075 -223981503 + L1P LINE L1 3604 3737 -2409 273 295 21 11 chr3 3544505 3544600 -223979978 + MIR SINE MIR 73 168 -94 186 318 45 0 chr3 3544649 3544715 -223979863 - MIR3 SINE MIR -51 157 89 2292 75 0 3 chr3 3544859 3545153 -223979425 - AluY SINE Alu -18 293 1 4477 123 13 20 chr3 3545781 3546526 -223978052 + L1MC1 LINE L1 5594 6333 0 191 383 66 48 chr3 3547226 3547453 -223977125 + L3 LINE CR1 1303 1533 -44 693 317 97 38 chr3 3548300 3548633 -223975945 + LTR16C LTR ERVL 1 368 -123 1932 148 13 0 chr3 3548633 3548931 -223975647 - AluSx SINE Alu -10 302 1 693 317 97 38 chr3 3548931 3549042 -223975536 + LTR16C LTR ERVL 368 471 -20 2136 128 3 0 chr3 3549447 3549751 -223974827 - AluSx SINE Alu -7 305 1 357 279 105 12 chr3 3549949 3550121 -223974457 - MIR SINE MIR -16 246 59 315 170 0 0 chr3 3552090 3552143 -223972435 + L1PA5 LINE L1 5951 6003 -151 40641 68 3 6 chr3 3552718 3558795 -223965783 - L1PA5 LINE L1 -2 6152 86 2451 62 3 3 chr3 3558795 3559100 -223965478 + AluY SINE Alu 1 305 -6 40641 68 3 6 chr3 3559100 3559185 -223965393 - L1PA5 LINE L1 -6068 86 2 225 0 0 0 chr3 3559270 3559295 -223965283 + (A)n Simple_repeat Simple_repeat 1 25 0 318 327 39 20 chr3 3559711 3559975 -223964603 + L1MC4a LINE L1 5637 5822 -299 347 297 0 9 chr3 3560245 3560356 -223964222 - L2 LINE L2 0 3272 3163 364 284 220 15 chr3 3560920 3561188 -223963390 - L2 LINE L2 0 3313 2991 244 175 0 53 chr3 3561190 3561247 -223963331 - L1M2 LINE L1 -455 5836 5783 413 187 0 11 chr3 3561247 3561338 -223963240 + (TG)n Simple_repeat Simple_repeat 2 91 0 2520 165 40 30 chr3 3561339 3561473 -223963105 - L1M2 LINE L1 -519 5793 5662 1367 184 79 11 chr3 3561473 3561632 -223962946 - AluJb SINE Alu -14 298 151 246 32 0 0 chr3 3561632 3561663 -223962915 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1367 184 79 11 chr3 3561663 3561781 -223962797 - AluJb SINE Alu -161 151 2 2520 165 40 30 chr3 3561781 3562521 -223962057 - L1M2 LINE L1 -650 5662 4915 2509 152 24 15 chr3 3562521 3562961 -223961617 + L1MA7 LINE L1 5828 6291 0 199 303 45 34 chr3 3563039 3563128 -223961450 - L2 LINE L2 -315 2957 2868 1812 152 27 3 chr3 3563870 3564166 -223960412 + MER2 DNA MER2_type 1 303 -42 507 231 13 45 chr3 3564219 3564375 -223960203 - MER105 DNA DNA 0 204 54 180 154 26 26 chr3 3564662 3564701 -223959877 + L2 LINE L2 3229 3267 -5 246 105 0 0 chr3 3564702 3564740 -223959838 + (AATTG)n Simple_repeat Simple_repeat 1 38 0 275 204 46 102 chr3 3564815 3564923 -223959655 - L2 LINE L2 -2 3311 3210 305 176 28 28 chr3 3565429 3565537 -223959041 + (TA)n Simple_repeat Simple_repeat 2 109 0 1985 128 0 7 chr3 3566898 3567186 -223957392 + AluSx SINE Alu 1 286 -26 189 171 0 0 chr3 3567209 3567244 -223957334 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 279 229 42 31 chr3 3567585 3567681 -223956897 + MER94 DNA DNA 37 133 -1 851 203 45 17 chr3 3567849 3568026 -223956552 + MER5A DNA MER1_type 8 189 0 198 171 0 0 chr3 3568281 3568322 -223956256 + (TG)n Simple_repeat Simple_repeat 2 42 0 544 13 0 64 chr3 3568798 3568876 -223955702 - L1PA3 LINE L1 0 6155 6083 381 80 0 2 chr3 3568877 3568933 -223955645 + L1PA5 LINE L1 5851 5899 -255 230 243 0 0 chr3 3569325 3569395 -223955183 + L1MC3 LINE L1 6579 6648 -1137 306 211 22 44 chr3 3569433 3569523 -223955055 - L1MC4 LINE L1 -1339 6703 6616 409 216 14 0 chr3 3569528 3569667 -223954911 + (TA)n Simple_repeat Simple_repeat 2 142 0 1133 109 0 0 chr3 3571647 3571812 -223952766 + L1PA14 LINE L1 5997 6161 0 800 311 108 28 chr3 3572762 3573300 -223951278 - L2 LINE L2 -5 3308 2734 279 0 0 0 chr3 3573383 3573414 -223951164 + (GCTG)n Simple_repeat Simple_repeat 4 34 0 255 31 0 0 chr3 3573664 3573696 -223950882 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr3 3574305 3574328 -223950250 + AT_rich Low_complexity Low_complexity 1 23 0 235 329 75 41 chr3 3574548 3574694 -223949884 + L2 LINE L2 3121 3271 -1 21 0 0 0 chr3 3576132 3576153 -223948425 + AT_rich Low_complexity Low_complexity 1 21 0 249 279 44 6 chr3 3576247 3576405 -223948173 + (TA)n Simple_repeat Simple_repeat 1 164 0 592 349 4 24 chr3 3576427 3576679 -223947899 - MIR SINE MIR -13 249 3 856 138 0 103 chr3 3577898 3577984 -223946594 - L1M3 LINE L1 -572 5762 5701 2313 106 0 0 chr3 3577984 3578286 -223946292 + AluSx SINE Alu 1 302 -10 856 138 0 103 chr3 3578286 3578373 -223946205 - L1M3 LINE L1 -633 5701 5607 2041 169 8 0 chr3 3578375 3578736 -223945842 + L1MB1 LINE L1 5773 6136 -53 1896 158 3 3 chr3 3578736 3579058 -223945520 + AluJb SINE Alu 1 312 0 27 29 0 0 chr3 3580224 3580258 -223944320 + AT_rich Low_complexity Low_complexity 1 34 0 373 347 64 6 chr3 3580783 3580956 -223943622 + MIR3 SINE MIR 15 197 -11 226 341 0 22 chr3 3582169 3582260 -223942318 - MIR SINE MIR -119 143 55 375 330 82 16 chr3 3582637 3582819 -223941759 - MIR SINE MIR -46 216 23 375 330 82 16 chr3 3582910 3583092 -223941486 - MIR SINE MIR -46 216 23 375 330 82 16 chr3 3583183 3583365 -223941213 - MIR SINE MIR -46 216 23 330 346 90 14 chr3 3584616 3584827 -223939751 - MIR SINE MIR -16 246 20 184 217 0 43 chr3 3584847 3584893 -223939685 + L3 LINE CR1 1405 1448 -129 2741 184 4 13 chr3 3585004 3585527 -223939051 - L1MB5 LINE L1 -8 6166 5649 648 269 122 5 chr3 3585544 3585741 -223938837 - MIR SINE MIR -22 240 21 614 274 38 28 chr3 3586304 3586516 -223938062 - L3 LINE CR1 -655 922 709 435 323 15 26 chr3 3588506 3588701 -223935877 - MER117 DNA MER1_type 0 197 5 270 320 104 8 chr3 3589463 3589588 -223934990 - L2 LINE L2 -6 3307 3171 204 24 48 48 chr3 3589978 3590020 -223934558 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 430 364 16 5 chr3 3590032 3590219 -223934359 - MIR SINE MIR -65 197 9 234 298 64 11 chr3 3590239 3590333 -223934245 - MIR3 SINE MIR -47 161 63 610 253 118 27 chr3 3590356 3590577 -223934001 - MIR SINE MIR 0 262 22 785 222 12 18 chr3 3590618 3590789 -223933789 + MER20 DNA MER1_type 31 200 -19 617 182 45 0 chr3 3591517 3591649 -223932929 - MER33 DNA MER1_type -131 193 56 2189 112 7 0 chr3 3592129 3592433 -223932145 + AluSq SINE Alu 1 306 -7 273 289 50 63 chr3 3593217 3593376 -223931202 - MER5A DNA MER1_type -3 186 30 766 138 86 0 chr3 3593636 3593788 -223930790 + L1MB4 LINE L1 6011 6175 -5 2261 93 3 13 chr3 3594048 3594361 -223930217 + AluSx SINE Alu 3 312 0 303 93 0 0 chr3 3595594 3595637 -223928941 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 374 311 123 34 chr3 3596102 3596337 -223928241 + MIR SINE MIR 7 262 0 279 322 98 9 chr3 3596533 3596714 -223927864 - MIR3 SINE MIR -60 202 4 387 283 78 95 chr3 3597284 3597694 -223926884 - MLT1L LTR MaLR -93 522 120 2035 114 3 36 chr3 3598718 3599026 -223925552 - AluY SINE Alu -13 298 1 224 344 32 71 chr3 3599492 3599646 -223924932 - L2 LINE L2 -6 3266 3119 227 67 7 5 chr3 3600688 3600823 -223923755 + AluSg/x SINE Alu 102 301 -2 180 0 0 0 chr3 3600871 3600891 -223923687 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1784 166 7 0 chr3 3600901 3601190 -223923388 - AluSx SINE Alu -21 291 1 2317 100 10 0 chr3 3601603 3601904 -223922674 + AluSq SINE Alu 1 304 -9 187 329 25 0 chr3 3601907 3601986 -223922592 + L2 LINE L2 2590 2670 -644 791 229 0 61 chr3 3602090 3602304 -223922274 - MER3 DNA MER1_type -8 201 1 2255 94 3 7 chr3 3602382 3602680 -223921898 + AluSp SINE Alu 1 297 -16 181 341 24 24 chr3 3602932 3603017 -223921561 + L2 LINE L2 3188 3272 0 285 296 28 28 chr3 3603517 3603659 -223920919 - L1ME LINE L1 -298 5823 5682 378 224 224 0 chr3 3604418 3604525 -223920053 - MIR SINE MIR -128 134 4 274 331 103 14 chr3 3604696 3604841 -223919737 + L3 LINE CR1 324 481 -1096 1272 236 59 13 chr3 3605108 3605481 -223919097 + L1MB7 LINE L1 5779 6168 -16 634 266 108 9 chr3 3605557 3605779 -223918799 + L3 LINE CR1 589 832 -745 24 32 0 0 chr3 3606004 3606035 -223918543 + AT_rich Low_complexity Low_complexity 1 31 0 442 325 104 0 chr3 3606048 3606260 -223918318 - MIR SINE MIR -24 238 5 3545 94 0 0 chr3 3607069 3607550 -223917028 - L1PA11 LINE L1 0 6174 5694 28 48 0 0 chr3 3607558 3607600 -223916978 + AT_rich Low_complexity Low_complexity 1 42 0 4910 215 39 34 chr3 3608443 3609653 -223914925 + L1MC/D LINE L1 3659 4878 -1268 2200 113 0 10 chr3 3609653 3610096 -223914482 - AluSx SINE Alu 0 312 1 4910 215 39 34 chr3 3610096 3610283 -223914295 + L1MC/D LINE L1 4878 5063 -1083 1884 128 68 44 chr3 3610284 3610650 -223913928 + THE1C LTR MaLR 1 375 0 9788 123 37 4 chr3 3610650 3612171 -223912407 + THE1C-int LTR MaLR 1 1580 0 2191 123 53 8 chr3 3612171 3612529 -223912049 + THE1C LTR MaLR 1 374 -1 1040 208 42 23 chr3 3612537 3612955 -223911623 + L1MC/D LINE L1 5067 5490 -743 6728 125 135 91 chr3 3613385 3615011 -223909567 + pTR5 LTR ERV1 741 2437 -1 185 0 40 0 chr3 3616281 3616306 -223908272 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2414 143 44 1 chr3 3616889 3617402 -223907176 + MER6A DNA MER2_type 1 605 0 180 200 0 0 chr3 3618434 3618474 -223906104 + CT-rich Low_complexity Low_complexity 1 40 0 201 283 17 33 chr3 3620798 3620858 -223903720 + L2 LINE L2 3206 3264 -8 1045 261 48 85 chr3 3622261 3622744 -223901834 + MLT1J LTR MaLR 3 467 -44 4545 133 41 13 chr3 3622768 3623517 -223901061 - MER4D LTR ERV1 0 903 134 2274 107 6 21 chr3 3624148 3624486 -223900092 + MER1B DNA MER1_type 5 337 0 1449 206 127 2 chr3 3625440 3625825 -223898753 - MLT2B2 LTR ERVL -7 508 2 748 203 7 0 chr3 3626937 3627080 -223897498 - L1MC/D LINE L1 -602 5640 5497 1813 149 0 32 chr3 3627097 3627429 -223897149 - AluJb SINE Alu 0 312 9 1071 194 60 39 chr3 3627429 3627453 -223897125 - L1MC/D LINE L1 -1013 5133 5111 2250 110 3 0 chr3 3627453 3627744 -223896834 - AluSx SINE Alu -20 292 1 1071 194 60 39 chr3 3627744 3628002 -223896576 - L1MC/D LINE L1 -1035 5111 4845 598 182 16 107 chr3 3627996 3628183 -223896395 + L1MB7 LINE L1 6010 6179 -5 * 1330 268 26 17 chr3 3628207 3628741 -223895837 - L1MC/D LINE L1 -1310 4836 4298 248 272 35 46 chr3 3629072 3629245 -223895333 - HAL1 LINE L1 -913 1594 1424 512 269 8 35 chr3 3629414 3629598 -223894980 - L1ME2 LINE L1 0 6166 5984 1651 206 72 60 chr3 3630003 3630436 -223894142 - MLT1D LTR MaLR 0 505 68 1800 153 0 15 chr3 3630448 3630801 -223893777 + Tigger4(Zombi) DNA MER2_type 34 2727 -4 331 162 59 15 chr3 3630800 3630868 -223893710 - MLT1D LTR MaLR -428 77 7 * 291 227 76 0 chr3 3631073 3631139 -223893439 + MER91C DNA MER1_type 36 106 -34 338 303 46 28 chr3 3631367 3631476 -223893102 - MIR SINE MIR -61 147 37 298 338 127 19 chr3 3631635 3631792 -223892786 - L2 LINE L2 0 3272 3099 1023 211 79 4 chr3 3632086 3632314 -223892264 - MIR SINE MIR -1 261 17 205 277 27 74 chr3 3632509 3632657 -223891921 - L2 LINE L2 -509 2805 2665 1034 245 112 99 chr3 3633196 3634044 -223890534 + L1MC4 LINE L1 7178 8036 -6 258 81 0 0 chr3 3635182 3635219 -223889359 + L2 LINE L2 3276 3312 -1 477 151 264 0 chr3 3635881 3635987 -223888591 - MER20 DNA MER1_type -24 195 62 2164 94 0 63 chr3 3636089 3636420 -223888158 + AluSg SINE Alu 1 310 0 311 254 35 122 chr3 3638920 3639117 -223885461 - MIR3 SINE MIR -13 195 16 229 315 22 11 chr3 3639298 3639390 -223885188 - MER102b DNA MER1_type -15 326 234 796 171 0 0 chr3 3643012 3643141 -223881437 + FLAM_A SINE Alu 1 129 -4 244 287 161 0 chr3 3643295 3643382 -223881196 + MIR3 SINE MIR 81 181 -27 180 164 66 0 chr3 3643512 3643573 -223881005 + CT-rich Low_complexity Low_complexity 1 65 0 222 193 23 23 chr3 3643589 3643677 -223880901 + CT-rich Low_complexity Low_complexity 6 93 0 200 276 0 0 chr3 3645572 3645630 -223878948 + GA-rich Low_complexity Low_complexity 3 60 0 180 0 0 0 chr3 3646871 3646891 -223877687 + (TG)n Simple_repeat Simple_repeat 1 20 0 1564 250 101 2 chr3 3647466 3647894 -223876684 - MER34 LTR ERV1 -47 495 26 237 258 103 52 chr3 3648234 3648389 -223876189 - MER102a DNA MER1_type -15 315 153 2092 141 3 3 chr3 3648916 3649229 -223875349 - AluSq SINE Alu 0 313 1 260 287 13 102 chr3 3649519 3649676 -223874902 - L2 LINE L2 0 3313 3171 378 0 0 0 chr3 3650805 3650847 -223873731 + (TG)n Simple_repeat Simple_repeat 1 42 0 364 280 40 0 chr3 3651325 3651425 -223873153 - MER5A DNA MER1_type -77 112 9 2192 197 83 10 chr3 3652647 3653155 -223871423 - L1MB8 LINE L1 -15 6163 5619 183 404 57 7 chr3 3655589 3655730 -223868848 + MIR3 SINE MIR 45 192 -16 300 111 0 0 chr3 3656065 3656110 -223868468 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3582 163 16 5 chr3 3657476 3658146 -223866432 - L1MA5 LINE L1 -5 6295 5618 273 57 0 0 chr3 3658430 3658465 -223866113 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2300 96 0 3 chr3 3658962 3659263 -223865315 - AluSc SINE Alu -9 300 1 891 200 0 11 chr3 3660905 3661080 -223863498 - AluJb SINE Alu -9 303 131 208 404 9 9 chr3 3661661 3661770 -223862808 + MIR SINE MIR 38 146 -116 6900 43 36 2 chr3 3661789 3663114 -223861464 - L1PA5 LINE L1 0 6154 4786 219 139 0 0 chr3 3663475 3663511 -223861067 + (CTG)n Simple_repeat Simple_repeat 3 38 0 743 168 0 0 chr3 3665243 3665368 -223859210 - FLAM_C SINE Alu -7 136 12 320 330 48 37 chr3 3665491 3665679 -223858899 + MIR SINE MIR 4 193 -69 225 244 0 0 chr3 3666396 3666441 -223858137 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 1800 188 106 33 chr3 3666588 3667013 -223857565 + MLT1C LTR MaLR 4 459 -8 325 307 62 36 chr3 3667525 3667717 -223856861 - L1ME4a LINE L1 -223 5898 5702 243 0 0 0 chr3 3668725 3668752 -223855826 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 280 14 140 chr3 3673076 3673219 -223851359 - L2 LINE L2 -10 3303 3179 4438 276 52 9 chr3 3673227 3674454 -223850124 - L1P LINE L1 -2695 3451 2172 4938 115 40 24 chr3 3674456 3675280 -223849298 + L1PA15 LINE L1 5329 6165 0 186 338 65 57 chr3 3675711 3675837 -223848741 - L2 LINE L2 -839 2475 2351 1802 165 3 7 chr3 3675837 3676171 -223848407 - AluSq SINE Alu 0 333 1 186 338 65 57 chr3 3676171 3676306 -223848272 - L2 LINE L2 -963 2351 2211 15424 95 3 22 chr3 3676568 3678900 -223845678 - L1PA7 LINE L1 -803 5343 3057 6599 50 0 2 chr3 3678900 3679718 -223844860 + L1PA7 LINE L1 5336 6151 -3 216 259 183 46 chr3 3681503 3681634 -223842944 + MIR3 SINE MIR 2 150 -58 665 241 26 101 chr3 3683170 3683398 -223841180 - MER58A DNA MER1_type -3 221 11 328 237 79 66 chr3 3683518 3683670 -223840908 - MER103 DNA DNA -12 154 1 225 215 101 0 chr3 3685232 3685311 -223839267 - L1MC4 LINE L1 -1339 6703 6617 2351 56 0 75 chr3 3686052 3686374 -223838204 + AluY SINE Alu 1 298 -13 1675 276 58 9 chr3 3686719 3687266 -223837312 - L1MC4a LINE L1 -2 7806 7233 353 293 64 0 chr3 3688040 3688180 -223836398 + MIR SINE MIR 100 248 -14 333 239 110 28 chr3 3688475 3688584 -223835994 + L2 LINE L2 3193 3310 -3 1987 164 0 6 chr3 3688737 3689048 -223835530 - AluJb SINE Alu -3 309 1 333 275 181 29 chr3 3689133 3689304 -223835274 - MIR SINE MIR -49 213 17 258 159 87 58 chr3 3689350 3689419 -223835159 + L2 LINE L2 3177 3247 -66 556 281 94 0 chr3 3690231 3690402 -223834176 - MIR SINE MIR -57 205 19 402 286 66 28 chr3 3690409 3690591 -223833987 + MER117 DNA MER1_type 2 190 -7 3735 143 22 14 chr3 3690838 3691320 -223833258 - L1PA16 LINE L1 -11 6155 5665 1769 181 0 13 chr3 3691320 3691634 -223832944 - AluJo SINE Alu -2 310 1 3735 143 22 14 chr3 3691634 3691782 -223832796 - L1PA16 LINE L1 -501 5665 5520 265 274 11 32 chr3 3691783 3691878 -223832700 + L1MB8 LINE L1 6028 6120 -58 194 350 100 0 chr3 3691970 3692090 -223832488 + MIR SINE MIR 131 262 0 237 304 88 0 chr3 3692384 3692565 -223832013 + HAL1 LINE L1 1918 2114 -393 234 198 111 0 chr3 3692665 3692746 -223831832 + HAL1 LINE L1 2244 2333 -174 270 313 240 7 chr3 3693140 3693290 -223831288 - MIR3 SINE MIR -3 205 21 356 354 18 18 chr3 3694868 3695030 -223829548 + MIR SINE MIR 32 192 -70 250 337 99 35 chr3 3695288 3695460 -223829118 - MIR SINE MIR -78 184 2 2249 99 3 7 chr3 3695688 3695992 -223828586 - AluY SINE Alu -8 303 1 214 295 67 19 chr3 3696131 3696236 -223828342 - MIR SINE MIR -23 239 130 326 269 42 152 chr3 3696393 3696702 -223827876 + L2 LINE L2 2994 3268 -4 207 0 0 0 chr3 3696924 3696947 -223827631 + (A)n Simple_repeat Simple_repeat 1 23 0 511 63 0 13 chr3 3698054 3698133 -223826445 + L1MA7 LINE L1 6212 6289 -2 261 333 13 0 chr3 3698284 3698359 -223826219 - MIR SINE MIR -97 111 36 230 347 51 10 chr3 3698525 3698623 -223825955 + L2 LINE L2 3144 3245 -27 489 267 48 59 chr3 3698756 3698783 -223825795 + Charlie8 DNA MER1_type 39 65 -1363 1971 143 0 10 chr3 3698783 3699083 -223825495 - AluJo SINE Alu -15 297 1 489 267 48 59 chr3 3699083 3699307 -223825271 + Charlie8 DNA MER1_type 65 1383 -45 2176 123 7 0 chr3 3700712 3701022 -223823556 + AluSx SINE Alu 1 312 0 359 295 27 9 chr3 3701299 3701411 -223823167 - L2 LINE L2 0 3272 3159 481 321 9 71 chr3 3701495 3701719 -223822859 - MIR SINE MIR -7 255 46 2179 118 3 6 chr3 3702541 3702855 -223821723 + AluSp SINE Alu 1 313 0 721 204 5 5 chr3 3703629 3703820 -223820758 + L1MA4 LINE L1 6104 6294 -6 1880 131 7 0 chr3 3703837 3704111 -223820467 + AluSx SINE Alu 1 276 -36 991 293 19 74 chr3 3704143 3704416 -223820162 + L2 LINE L2 2908 3150 -163 2293 86 0 43 chr3 3704416 3704741 -223819837 - AluY SINE Alu 0 311 1 991 293 19 74 chr3 3704741 3704897 -223819681 + L2 LINE L2 3150 3313 0 2146 136 0 0 chr3 3705150 3705452 -223819126 - AluSx SINE Alu -8 304 3 302 263 11 21 chr3 3705739 3705834 -223818744 + LTR16C LTR ERVL 393 486 -5 348 341 103 0 chr3 3706075 3706201 -223818377 + MIR3 SINE MIR 65 203 -5 429 320 92 44 chr3 3708035 3708285 -223816293 + MIR SINE MIR 1 262 0 227 255 0 0 chr3 3708438 3708489 -223816089 + (ATGGTG)n Simple_repeat Simple_repeat 1 51 0 237 65 0 0 chr3 3708640 3708671 -223815907 + (TG)n Simple_repeat Simple_repeat 2 32 0 395 330 139 14 chr3 3709361 3709576 -223815002 - MIR SINE MIR -15 247 6 681 255 34 0 chr3 3709642 3709791 -223814787 + MER5A DNA MER1_type 1 154 -35 251 284 126 11 chr3 3710008 3710103 -223814475 - MIR SINE MIR -96 166 61 2601 167 21 4 chr3 3710295 3710774 -223813804 + L1MB7 LINE L1 5682 6168 -16 214 281 211 47 chr3 3710905 3711033 -223813545 - MIR3 SINE MIR -50 158 10 274 297 117 39 chr3 3711886 3712014 -223812564 - MIR3 SINE MIR -11 197 60 221 297 102 47 chr3 3712332 3712460 -223812118 - L2 LINE L2 -1 3312 3178 254 282 17 60 chr3 3712564 3712681 -223811897 + MIR SINE MIR 4 115 -147 2187 123 23 0 chr3 3713029 3713331 -223811247 + AluSq SINE Alu 2 310 -3 410 132 13 0 chr3 3713475 3713551 -223811027 + (TAGG)n Simple_repeat Simple_repeat 3 79 0 5758 36 1 0 chr3 3713767 3714457 -223810121 + L1PA4 LINE L1 5464 6154 -1 235 279 64 79 chr3 3714624 3714764 -223809814 - MIR SINE MIR -43 219 82 199 0 31 31 chr3 3714865 3714897 -223809681 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2118 108 7 0 chr3 3714903 3715189 -223809389 - AluSq SINE Alu -17 296 9 257 333 24 0 chr3 3716488 3716572 -223808006 + MIR3 SINE MIR 69 154 -54 25 31 0 0 chr3 3716659 3716691 -223807887 + AT_rich Low_complexity Low_complexity 1 32 0 686 251 63 58 chr3 3716712 3716965 -223807613 + MER113 DNA MER1_type? 172 430 -91 2048 124 3 3 chr3 3716965 3717271 -223807307 - AluSg SINE Alu 0 306 1 686 251 63 58 chr3 3717271 3717363 -223807215 + MER113 DNA MER1_type? 430 520 -1 198 0 0 0 chr3 3717392 3717414 -223807164 + (A)n Simple_repeat Simple_repeat 1 22 0 1747 221 86 8 chr3 3718194 3718670 -223805908 - MLT1F1 LTR MaLR -54 513 1 808 323 51 51 chr3 3718680 3718854 -223805724 + L2 LINE L2 2564 2737 -535 1958 111 0 0 chr3 3718854 3719116 -223805462 - AluSx SINE Alu -3 309 48 808 323 51 51 chr3 3719116 3719436 -223805142 + L2 LINE L2 2737 3053 -219 411 236 71 7 chr3 3719483 3719623 -223804955 - L1MA10 LINE L1 -7 6327 6179 282 317 146 0 chr3 3719731 3719854 -223804724 + L2 LINE L2 3132 3272 0 2868 6 0 0 chr3 3719959 3720270 -223804308 - AluYa5 SINE Alu 0 311 1 1675 181 3 13 chr3 3720472 3720787 -223803791 - AluJo SINE Alu 0 312 1 2236 130 16 32 chr3 3721004 3721374 -223803204 + THE1B LTR MaLR 1 364 0 343 271 66 60 chr3 3721926 3722092 -223802486 - MIR SINE MIR -44 218 52 2210 96 10 10 chr3 3723023 3723325 -223801253 - AluSx SINE Alu -10 302 1 195 114 0 0 chr3 3723371 3723406 -223801172 + (TG)n Simple_repeat Simple_repeat 2 36 0 333 295 65 29 chr3 3723652 3723791 -223800787 - L3 LINE CR1 -498 1079 936 469 298 82 33 chr3 3725134 3725379 -223799199 - MIR SINE MIR -4 258 2 21 36 0 0 chr3 3727540 3727568 -223797010 + AT_rich Low_complexity Low_complexity 1 28 0 504 311 13 0 chr3 3727835 3727986 -223796592 - MIR SINE MIR -100 162 10 255 61 0 0 chr3 3728609 3728642 -223795936 + (T)n Simple_repeat Simple_repeat 1 33 0 7166 45 2 8 chr3 3728818 3730356 -223794222 - L1PA5 LINE L1 -8 6146 4610 7339 52 4 0 chr3 3730356 3731321 -223793257 + L1PA5 LINE L1 3647 4615 -1531 578 260 148 51 chr3 3732420 3732793 -223791785 - MLT1I LTR MaLR 0 409 1 572 274 55 20 chr3 3732950 3733151 -223791427 - L2 LINE L2 -1 3312 3105 813 202 0 0 chr3 3733269 3733442 -223791136 - L1MA10 LINE L1 -1 6333 6161 523 195 0 18 chr3 3733488 3733601 -223790977 - L1MB1 LINE L1 -44 6145 6035 1280 188 90 0 chr3 3733622 3733888 -223790690 - AluJo SINE Alu -22 290 1 1359 231 65 39 chr3 3733901 3734317 -223790261 - L2 LINE L2 -407 2907 2481 377 329 150 28 chr3 3734349 3734901 -223789677 - L2 LINE L2 0 3313 2682 1511 90 9 9 chr3 3734901 3735112 -223789466 + L1PA10 LINE L1 5954 6164 -4 377 329 150 28 chr3 3735112 3735187 -223789391 - L2 LINE L2 -631 2682 2618 548 302 61 27 chr3 3735805 3736194 -223788384 + L1ME3A LINE L1 5551 5949 -217 360 0 0 0 chr3 3736216 3736256 -223788322 + (CA)n Simple_repeat Simple_repeat 1 40 0 29 28 0 0 chr3 3736494 3736530 -223788048 + AT_rich Low_complexity Low_complexity 1 36 0 999 182 0 17 chr3 3736943 3737119 -223787459 + FRAM SINE Alu 1 173 -3 1484 130 0 63 chr3 3737162 3737415 -223787163 - AluSg SINE Alu -73 237 1 1401 210 24 48 chr3 3737761 3738133 -223786445 + MLT1A1 LTR MaLR 1 363 -2 24 91 0 0 chr3 3738385 3738451 -223786127 + AT_rich Low_complexity Low_complexity 1 66 0 249 266 117 0 chr3 3738611 3738705 -223785873 + L2 LINE L2 3168 3272 0 21 0 0 0 chr3 3738811 3738832 -223785746 + AT_rich Low_complexity Low_complexity 1 21 0 265 316 0 0 chr3 3739665 3739744 -223784834 - MIR SINE MIR -54 208 130 288 137 0 0 chr3 3739930 3739981 -223784597 + (A)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr3 3740747 3740780 -223783798 + (CA)n Simple_repeat Simple_repeat 2 34 0 1724 147 7 7 chr3 3740788 3741094 -223783484 - MER47A DNA MER2_type -1 365 60 376 309 57 17 chr3 3741878 3742053 -223782525 - MLT1L LTR MaLR -345 270 89 1076 287 176 33 chr3 3742550 3743499 -223781079 - L2 LINE L2 -4 3309 2216 374 264 0 8 chr3 3744244 3744372 -223780206 - L1MB7 LINE L1 -5 6161 6043 4813 80 35 1 chr3 3744664 3745330 -223779248 - L1PA8A LINE L1 0 6131 5444 4396 106 10 0 chr3 3745330 3746059 -223778519 + L1P LINE L1 4690 5422 -743 2210 103 0 13 chr3 3746060 3746362 -223778216 - AluSc SINE Alu -11 298 1 208 176 0 0 chr3 3746656 3746690 -223777888 - MIR SINE MIR -23 239 206 180 205 26 0 chr3 3746782 3746821 -223777757 + MIR SINE MIR 200 239 -23 186 172 0 125 chr3 3746821 3746885 -223777693 + MIR SINE MIR 200 255 -7 378 201 35 7 chr3 3746886 3747030 -223777548 + (TATATG)n Simple_repeat Simple_repeat 3 150 0 560 244 60 50 chr3 3747139 3747340 -223777238 - MIR SINE MIR -58 204 2 285 309 56 32 chr3 3747712 3747838 -223776740 + L2 LINE L2 3167 3295 -18 1667 177 3 3 chr3 3748858 3749146 -223775432 + AluJo SINE Alu 1 288 -24 361 373 20 15 chr3 3749595 3749796 -223774782 + MIR SINE MIR 51 252 -10 2041 41 0 34 chr3 3750032 3750301 -223774277 + L1PA7 LINE L1 5894 6153 -1 1376 118 86 14 chr3 3750996 3751216 -223773362 - AluSx SINE Alu -76 236 1 561 311 50 25 chr3 3751282 3751520 -223773058 - MIR SINE MIR 0 262 19 757 247 174 12 chr3 3752566 3752910 -223771668 + Charlie4a DNA MER1_type 82 481 -27 2080 133 3 7 chr3 3753269 3753577 -223771001 - AluSx SINE Alu -5 307 1 541 303 76 5 chr3 3753578 3753763 -223770815 + MIR SINE MIR 48 245 -17 339 299 125 21 chr3 3754244 3754675 -223769903 - L1ME3A LINE L1 -275 5895 5420 325 293 30 15 chr3 3754692 3754890 -223769688 - L1ME3A LINE L1 -860 5286 5086 2183 55 0 15 chr3 3754899 3755171 -223769407 + AluY SINE Alu 44 311 0 433 284 46 0 chr3 3755720 3755829 -223768749 + MER81 DNA DNA 1 114 0 2596 53 0 0 chr3 3756137 3756439 -223768139 - AluY SINE Alu -9 302 1 1232 199 11 14 chr3 3757769 3758045 -223766533 + MLT1B LTR MaLR 116 390 0 583 279 7 13 chr3 3758619 3758773 -223765805 + MER58A DNA MER1_type 3 155 0 2021 124 0 14 chr3 3758805 3759096 -223765482 + AluSx SINE Alu 7 293 -19 234 0 0 0 chr3 3759348 3759374 -223765204 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 32 0 0 chr3 3760257 3760288 -223764290 + AT_rich Low_complexity Low_complexity 1 31 0 1551 175 7 78 chr3 3760389 3760697 -223763881 + AluJo SINE Alu 1 286 -26 228 67 0 0 chr3 3760698 3760728 -223763850 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 125 0 0 chr3 3760729 3760761 -223763817 + (TATG)n Simple_repeat Simple_repeat 3 34 0 465 337 57 26 chr3 3761333 3761526 -223763052 - MIR SINE MIR -11 251 53 204 122 73 0 chr3 3761600 3761682 -223762896 + (TA)n Simple_repeat Simple_repeat 1 88 0 2058 100 0 78 chr3 3763191 3763522 -223761056 + AluY SINE Alu 1 305 -6 3479 93 12 14 chr3 3764347 3764842 -223759736 + LOR1a LTR ERV1 1 494 -3 1893 167 0 19 chr3 3765539 3765884 -223758694 - AluJb SINE Alu 0 339 1 192 235 136 25 chr3 3765965 3766046 -223758532 - MIR SINE MIR -153 109 20 1372 272 79 88 chr3 3767295 3768319 -223756259 + L2 LINE L2 2289 3313 0 198 143 0 0 chr3 3769269 3769304 -223755274 + (TG)n Simple_repeat Simple_repeat 1 35 0 1865 176 66 15 chr3 3770621 3771122 -223753456 - MLT2A2 LTR ERVL -1 553 3 466 352 5 9 chr3 3771508 3771718 -223752860 + MIR SINE MIR 42 250 -12 1788 151 7 0 chr3 3771813 3772116 -223752462 - AluSx SINE Alu 0 305 1 402 234 110 28 chr3 3772211 3772356 -223752222 - L2 LINE L2 -48 3265 3109 182 327 0 0 chr3 3774702 3774757 -223749821 + MIR SINE MIR 87 141 -67 643 269 34 17 chr3 3775004 3775179 -223749399 + MIR SINE MIR 75 252 -10 1930 191 26 0 chr3 3775257 3775635 -223748943 - MLT1B LTR MaLR 0 390 3 2214 92 3 0 chr3 3775742 3776047 -223748531 + AluSq SINE Alu 1 306 0 239 282 13 13 chr3 3776258 3776336 -223748242 + MIR SINE MIR 71 148 -114 9384 133 15 8 chr3 3776900 3778475 -223746103 + Tigger1 DNA MER2_type 3 1589 -829 927 126 16 0 chr3 3778476 3778603 -223745975 + AluSq/x SINE Alu 3 131 -181 356 153 34 0 chr3 3778603 3778721 -223745857 + (TA)n Simple_repeat Simple_repeat 1 122 0 4472 144 33 9 chr3 3778742 3779553 -223745025 + Tigger1 DNA MER2_type 1577 2407 -11 828 129 0 23 chr3 3780196 3780319 -223744259 + AluJo/FLAM SINE Alu 1 122 -180 2202 120 0 13 chr3 3780319 3780635 -223743943 - AluSx SINE Alu 0 312 1 708 147 0 0 chr3 3780748 3780850 -223743728 + FRAM SINE Alu 45 146 -30 802 241 21 70 chr3 3781438 3781766 -223742812 - MARNA DNA Mariner -120 466 155 224 254 0 56 chr3 3782074 3782145 -223742433 - MIR SINE MIR -127 135 69 257 310 118 48 chr3 3784505 3784734 -223739844 + L3 LINE CR1 1253 1497 -80 484 284 44 29 chr3 3785026 3785230 -223739348 + L2 LINE L2 3107 3313 0 300 291 6 91 chr3 3786668 3786724 -223737854 - MIR SINE MIR -34 228 169 1820 138 71 15 chr3 3786724 3787049 -223737529 + MER61A LTR ERV1 1 343 0 300 291 6 91 chr3 3787049 3787157 -223737421 - MIR SINE MIR -93 169 78 254 223 66 0 chr3 3787325 3787408 -223737170 - MIR SINE MIR -65 143 90 504 45 0 0 chr3 3787572 3787639 -223736939 + (CA)n Simple_repeat Simple_repeat 2 68 0 2189 114 13 3 chr3 3787810 3788117 -223736461 + AluSx SINE Alu 1 310 -2 292 308 17 50 chr3 3789448 3789568 -223735010 - MIR3 SINE MIR -15 193 78 257 233 17 0 chr3 3789596 3789656 -223734922 - MIR SINE MIR -3 259 199 21 36 0 0 chr3 3790129 3790157 -223734421 + AT_rich Low_complexity Low_complexity 1 28 0 2331 92 13 0 chr3 3790160 3790463 -223734115 + AluSp SINE Alu 1 307 -6 276 343 153 7 chr3 3790651 3790788 -223733790 - L2 LINE L2 -5 3267 3111 850 326 86 10 chr3 3790869 3791265 -223733313 - MLT1J1 LTR MaLR -13 433 8 2161 128 0 28 chr3 3791440 3791761 -223732817 + AluSx SINE Alu 1 312 0 1792 171 26 61 chr3 3792363 3792819 -223731759 + L1MB8 LINE L1 5732 6171 -7 7261 47 3 0 chr3 3793329 3794401 -223730177 + L1PA5 LINE L1 5079 6153 -1 23181 59 7 9 chr3 3796573 3799749 -223724829 - L1P LINE L1 -2962 3184 14 202 281 167 21 chr3 3799872 3799968 -223724610 - L2 LINE L2 -42 3230 3121 216 372 74 8 chr3 3800142 3800263 -223724315 + MIR SINE MIR 21 149 -113 1092 216 124 63 chr3 3800364 3800549 -223724029 + MLT1H LTR MaLR 7 179 -370 2289 95 0 7 chr3 3800549 3800855 -223723723 - AluY SINE Alu -7 304 1 1092 216 124 63 chr3 3800855 3801177 -223723401 + MLT1H LTR MaLR 179 545 -4 1427 167 10 33 chr3 3801494 3801594 -223722984 - L1MA5 LINE L1 -107 6193 6092 2106 142 0 3 chr3 3801594 3801905 -223722673 + AluSx SINE Alu 3 312 0 1427 167 10 33 chr3 3801905 3802110 -223722468 - L1MA5 LINE L1 -208 6092 5895 619 193 29 0 chr3 3802093 3802233 -223722345 + L1 LINE L1 5065 5208 -938 * 1045 280 100 32 chr3 3802314 3802785 -223721793 + L2 LINE L2 2804 3306 -7 428 306 121 29 chr3 3802911 3803117 -223721461 - MIR SINE MIR -12 250 26 277 114 0 0 chr3 3803134 3803178 -223721400 + U5 snRNA snRNA 1 44 -72 1957 146 0 13 chr3 3803338 3803639 -223720939 - AluSx SINE Alu -15 297 1 309 284 32 0 chr3 3804244 3804339 -223720239 + L1MC4 LINE L1 6609 6706 -1336 240 211 0 0 chr3 3804339 3804396 -223720182 + (TA)n Simple_repeat Simple_repeat 2 58 0 271 145 0 65 chr3 3804447 3804509 -223720069 - Alu SINE Alu -3 298 241 500 43 29 0 chr3 3804571 3804641 -223719937 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 271 366 54 71 chr3 3807149 3807499 -223717079 - L2 LINE L2 -22 3250 2907 404 313 162 14 chr3 3807499 3807850 -223716728 + L1ME4a LINE L1 5457 5859 -262 321 308 61 33 chr3 3807860 3808074 -223716504 + L1ME4a LINE L1 5899 6118 -3 186 143 0 0 chr3 3808812 3808847 -223715731 + (TA)n Simple_repeat Simple_repeat 2 36 0 258 105 0 0 chr3 3810435 3810473 -223714105 + (CA)n Simple_repeat Simple_repeat 1 38 0 259 260 27 0 chr3 3810610 3810683 -223713895 + MIR SINE MIR 178 252 -10 198 118 0 0 chr3 3810696 3810730 -223713848 + (ATG)n Simple_repeat Simple_repeat 2 35 0 409 333 16 38 chr3 3810911 3811097 -223713481 + MER5A DNA MER1_type 2 183 -6 206 181 0 56 chr3 3812757 3812829 -223711749 + T-rich Low_complexity Low_complexity 5 72 0 215 254 98 142 chr3 3813378 3813583 -223710995 - L3 LINE CR1 -204 1373 1178 475 146 171 8 chr3 3813637 3813760 -223710818 - L1MA9 LINE L1 -6 6306 6164 195 69 0 0 chr3 3813760 3813789 -223710789 + (TG)n Simple_repeat Simple_repeat 2 30 0 281 360 18 0 chr3 3814035 3814149 -223710429 - L2 LINE L2 -998 2316 2201 486 321 40 36 chr3 3814238 3814487 -223710091 + MER102a DNA MER1_type 81 330 0 1483 182 78 7 chr3 3814495 3814764 -223709814 + AluJb SINE Alu 1 288 -24 311 286 75 106 chr3 3814909 3815070 -223709508 - MIR3 SINE MIR -7 201 46 337 279 140 7 chr3 3817477 3817613 -223706965 + MIR SINE MIR 4 157 -105 1356 213 49 21 chr3 3817766 3818094 -223706484 + MER58B DNA MER1_type 4 340 -1 24 53 0 0 chr3 3820027 3820065 -223704513 + AT_rich Low_complexity Low_complexity 1 38 0 428 245 32 39 chr3 3820311 3820466 -223704112 - L1ME2 LINE L1 -10 6154 6001 378 222 25 12 chr3 3821373 3821454 -223703124 + L2 LINE L2 3226 3307 -6 1720 157 52 0 chr3 3821579 3821870 -223702708 + AluSx SINE Alu 1 305 0 446 331 43 27 chr3 3822348 3822605 -223701973 - L3 LINE CR1 -157 1420 1160 211 176 15 29 chr3 3823118 3823186 -223701392 + (TATG)n Simple_repeat Simple_repeat 3 69 0 1286 194 20 103 chr3 3823396 3823794 -223700784 + MLT1A1 LTR MaLR 1 365 0 423 331 24 24 chr3 3824530 3824699 -223699879 + MLT1K LTR MaLR 225 393 -195 1881 165 57 39 chr3 3824780 3825187 -223699391 - MLT2D LTR ERVL 0 414 1 2013 95 0 18 chr3 3825884 3826157 -223698421 + AluSq SINE Alu 31 298 -15 428 263 53 26 chr3 3827339 3827491 -223697087 - MIR3 SINE MIR -21 187 32 259 188 31 31 chr3 3828766 3828830 -223695748 - MIR3 SINE MIR -47 161 98 545 86 0 12 chr3 3828910 3828991 -223695587 - MADE1 DNA Mariner 0 80 1 284 258 61 30 chr3 3828992 3829124 -223695454 - LTR67 LTR ERVL -9 548 413 573 234 22 7 chr3 3830144 3830281 -223694297 - MIR SINE MIR -38 224 86 300 300 74 45 chr3 3830794 3831037 -223693541 + L1M4 LINE L1 2879 3128 -3018 2200 116 0 13 chr3 3831129 3831440 -223693138 + AluSx SINE Alu 1 307 -5 375 192 70 6 chr3 3831713 3831801 -223692777 - MER5A DNA MER1_type -1 188 86 189 196 0 0 chr3 3832125 3832171 -223692407 + (TA)n Simple_repeat Simple_repeat 2 47 0 2128 65 0 8 chr3 3832231 3832493 -223692085 + AluY SINE Alu 29 288 -23 721 138 3 20 chr3 3832549 3832896 -223691682 + (TA)n Simple_repeat Simple_repeat 1 341 0 307 203 72 0 chr3 3832899 3832968 -223691610 - L1MCa LINE L1 -4361 2065 1992 657 116 35 0 chr3 3832974 3833147 -223691431 + (TA)n Simple_repeat Simple_repeat 1 179 0 284 165 11 0 chr3 3833161 3833252 -223691326 + (TA)n Simple_repeat Simple_repeat 1 92 0 314 292 22 0 chr3 3833254 3833343 -223691235 + L1MC4 LINE L1 6613 6703 -1339 516 102 51 21 chr3 3833343 3833580 -223690998 + (TA)n Simple_repeat Simple_repeat 1 244 0 492 111 70 0 chr3 3833599 3833860 -223690718 + (TA)n Simple_repeat Simple_repeat 1 279 0 542 276 167 10 chr3 3834572 3834764 -223689814 + MIR SINE MIR 20 241 -21 201 74 0 0 chr3 3834770 3834797 -223689781 + (TG)n Simple_repeat Simple_repeat 2 28 0 1879 141 0 29 chr3 3834828 3835134 -223689444 + AluJb SINE Alu 12 308 -4 867 168 66 6 chr3 3835431 3835598 -223688980 - FRAM SINE Alu 0 176 1 369 0 0 0 chr3 3836527 3836568 -223688010 + (CA)n Simple_repeat Simple_repeat 1 41 0 726 237 23 6 chr3 3837100 3837273 -223687305 - MER5B DNA MER1_type -2 176 1 1901 138 47 0 chr3 3837431 3837729 -223686849 + AluSx SINE Alu 1 312 0 542 242 86 86 chr3 3838959 3839228 -223685350 - MER102b DNA MER1_type -3 338 70 1704 232 50 40 chr3 3840202 3840367 -223684211 - MER39 LTR ERV1 0 707 545 3502 189 104 23 chr3 3840367 3841164 -223683414 + MER21B LTR ERV1 1 862 -1 1704 232 50 40 chr3 3841164 3841512 -223683066 - MER39 LTR ERV1 -162 545 8 466 317 77 18 chr3 3841602 3841823 -223682755 + MIR SINE MIR 26 259 -3 337 286 58 94 chr3 3841916 3842140 -223682438 - MIR SINE MIR -15 247 32 848 199 6 0 chr3 3842539 3842700 -223681878 - FRAM SINE Alu -14 162 1 320 337 200 6 chr3 3843178 3843353 -223681225 + MIR SINE MIR 2 210 -52 1214 253 50 19 chr3 3843365 3843728 -223680850 - MLT1A2 LTR MaLR 0 374 1 1344 172 0 5 chr3 3843758 3843979 -223680599 - AluJb SINE Alu -7 305 86 252 320 0 0 chr3 3844147 3844225 -223680353 + MIR SINE MIR 146 223 -39 317 211 0 0 chr3 3844225 3844282 -223680296 - MLT1A1 LTR MaLR 0 365 309 3598 175 55 48 chr3 3844452 3844924 -223679654 - L1MB7 LINE L1 -54 6130 5649 2591 191 60 15 chr3 3844924 3845462 -223679116 + MER68 LTR ERV1 1 562 0 3598 175 55 48 chr3 3845462 3845907 -223678671 - L1MB7 LINE L1 -535 5649 5208 278 266 128 11 chr3 3846919 3847013 -223677565 + L2 LINE L2 3209 3313 0 2031 121 28 3 chr3 3847098 3847388 -223677190 - AluSx SINE Alu -15 297 1 1090 82 0 0 chr3 3847388 3847523 -223677055 - AluSq/x SINE Alu -177 135 1 579 246 175 6 chr3 3848561 3848732 -223675846 - MIR SINE MIR -26 236 37 2239 117 3 0 chr3 3848763 3849071 -223675507 - AluSx SINE Alu -3 309 1 216 167 0 0 chr3 3849365 3849401 -223675177 + (TG)n Simple_repeat Simple_repeat 1 36 0 903 306 77 31 chr3 3849426 3849589 -223674989 + L2 LINE L2 2903 3057 -256 1928 147 58 6 chr3 3849589 3849935 -223674643 + MLT1A1 LTR MaLR 1 364 -1 903 306 77 31 chr3 3849935 3850163 -223674415 + L2 LINE L2 3057 3312 -1 288 395 9 0 chr3 3850989 3851103 -223673475 + MIR SINE MIR 38 152 -56 1407 199 8 105 chr3 3851149 3851550 -223673028 - MLT1A1 LTR MaLR -1 364 3 244 268 42 92 chr3 3853073 3853215 -223671363 + MER5A DNA MER1_type 27 161 -28 958 291 86 35 chr3 3853721 3854126 -223670452 - MLT1K LTR MaLR -1 587 162 1426 162 62 16 chr3 3854497 3854805 -223669773 + L1MC2 LINE L1 6014 6335 -9 237 189 54 54 chr3 3854828 3854902 -223669676 + L2 LINE L2 3177 3250 -63 924 194 54 70 chr3 3854937 3855195 -223669383 - MER46C DNA MER2_type -5 333 80 2078 79 76 7 chr3 3857082 3857373 -223667205 + AluY SINE Alu 1 311 0 518 127 0 0 chr3 3857432 3857511 -223667067 + AluSg1 SINE Alu 1 79 -230 2523 49 0 0 chr3 3859566 3859870 -223664708 + AluY SINE Alu 7 310 -1 186 0 28 56 chr3 3860038 3860074 -223664504 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1945 207 15 67 chr3 3860182 3860400 -223664178 - L1 LINE L1 -904 5242 5014 1672 99 0 5 chr3 3860400 3860623 -223663955 - AluSg/x SINE Alu -18 294 73 1945 207 15 67 chr3 3860623 3861164 -223663414 - L1 LINE L1 -1132 5014 4562 1068 328 142 39 chr3 3861497 3862510 -223662068 - L3 LINE CR1 -66 1511 394 415 344 56 25 chr3 3862483 3862870 -223661708 + L2 LINE L2 2612 3104 -209 * 426 294 79 99 chr3 3863099 3863633 -223660945 - L2 LINE L2 -457 2857 2335 445 303 0 0 chr3 3863638 3863757 -223660821 + MER94 DNA DNA 16 134 0 422 279 146 84 chr3 3863772 3864368 -223660210 - L2 LINE L2 -1020 2294 1662 467 354 40 5 chr3 3864719 3864917 -223659661 - MIR SINE MIR -27 235 31 23 33 0 0 chr3 3866715 3866745 -223657833 + AT_rich Low_complexity Low_complexity 1 30 0 271 377 39 8 chr3 3868122 3868252 -223656326 + MIR3 SINE MIR 2 135 -73 901 220 10 0 chr3 3868258 3868458 -223656120 + MER3 DNA MER1_type 3 204 -5 1555 192 44 49 chr3 3869126 3869532 -223655046 - MER21B LTR ERV1 -57 806 403 384 278 61 0 chr3 3870016 3870131 -223654447 - MIR SINE MIR -59 203 82 2171 103 0 0 chr3 3871283 3871595 -223652983 + AluSg SINE Alu 1 312 0 559 200 42 18 chr3 3872062 3872227 -223652351 - MLT1A1 LTR MaLR -196 169 1 225 94 0 0 chr3 3873403 3873435 -223651143 + (CCA)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr3 3873655 3873680 -223650898 + (T)n Simple_repeat Simple_repeat 1 25 0 1716 167 0 33 chr3 3874062 3874367 -223650211 + AluJb SINE Alu 7 301 -11 674 306 51 4 chr3 3877914 3878149 -223646429 + MIR SINE MIR 9 254 -8 220 0 86 0 chr3 3878266 3878301 -223646277 + A-rich Low_complexity Low_complexity 2 39 0 1995 66 44 0 chr3 3878577 3878849 -223645729 - L1PA13 LINE L1 -19 6144 5861 2153 110 3 7 chr3 3878885 3879184 -223645394 + AluSx SINE Alu 1 298 -14 978 82 0 15 chr3 3879238 3879398 -223645180 + AluY SINE Alu 150 307 0 221 116 0 23 chr3 3881148 3881191 -223643387 + (TTCTCC)n Simple_repeat Simple_repeat 3 44 0 2490 46 7 0 chr3 3881205 3881512 -223643066 + AluY SINE Alu 1 309 -2 235 311 14 14 chr3 3881577 3881651 -223642927 + MIR SINE MIR 19 92 -116 210 343 126 40 chr3 3882852 3883050 -223641528 - L2 LINE L2 -509 2805 2591 2695 297 100 32 chr3 3883156 3884175 -223640403 + L2 LINE L2 1635 2769 -544 2148 154 83 8 chr3 3884175 3884572 -223640006 + MSTA LTR MaLR 2 428 0 2695 297 100 32 chr3 3884572 3884985 -223639593 + L2 LINE L2 2769 3153 -160 23 68 0 0 chr3 3885729 3885773 -223638805 + AT_rich Low_complexity Low_complexity 1 44 0 28 53 0 40 chr3 3886100 3886175 -223638403 + AT_rich Low_complexity Low_complexity 1 72 0 191 235 123 12 chr3 3886386 3886467 -223638111 - MIR SINE MIR -77 185 96 423 224 96 8 chr3 3886739 3886864 -223637714 - MER103 DNA DNA 0 166 31 1044 113 0 0 chr3 3886865 3887007 -223637571 + THE1C LTR MaLR 1 142 -233 1874 129 46 16 chr3 3888245 3888548 -223636030 - AluSx SINE Alu 0 312 1 568 234 22 7 chr3 3889396 3889533 -223635045 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3890616 3890685 -223633893 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3890686 3890767 -223633811 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3890847 3890911 -223633667 + MIR3 SINE MIR 98 161 -47 449 248 47 16 chr3 3891550 3891679 -223632899 - MER94 DNA DNA -1 133 1 2411 129 89 65 chr3 3892697 3892750 -223631828 + MER34 LTR ERV1 1 51 -491 1696 164 0 14 chr3 3892750 3893056 -223631522 - AluJo SINE Alu 0 302 1 2411 129 89 65 chr3 3893056 3893527 -223631051 + MER34 LTR ERV1 51 539 -3 349 293 67 7 chr3 3893570 3893720 -223630858 - L1ME3A LINE L1 -233 5920 5762 645 285 65 19 chr3 3893764 3894458 -223630120 - L1ME3A LINE L1 -536 5609 4884 522 278 109 24 chr3 3894571 3895218 -223629360 - L1MEd LINE L1 -4596 1714 971 314 363 64 58 chr3 3895293 3895670 -223628908 - L1MEd LINE L1 -5737 382 4 1990 146 0 0 chr3 3895750 3896044 -223628534 + AluSx SINE Alu 1 294 -18 565 196 0 0 chr3 3896047 3896139 -223628439 + AluS SINE Alu 1 92 -220 1500 120 43 0 chr3 3896240 3896488 -223628090 + AluSg/x SINE Alu 66 322 0 2288 91 3 0 chr3 3896498 3896783 -223627795 + AluSp SINE Alu 3 288 -25 226 0 59 0 chr3 3896792 3896826 -223627752 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 200 219 0 0 chr3 3897586 3897627 -223626951 - MER5C DNA MER1_type -6 318 278 323 224 37 112 chr3 3897772 3897906 -223626672 - MER5C DNA MER1_type -200 124 1 218 324 63 63 chr3 3898135 3898246 -223626332 + L2 LINE L2 3141 3251 -21 270 300 129 36 chr3 3898721 3898861 -223625717 + MIR3 SINE MIR 6 158 -50 1537 177 7 14 chr3 3898897 3899209 -223625369 + AluJo SINE Alu 1 310 0 2183 113 0 7 chr3 3899425 3899726 -223624852 + AluSg SINE Alu 1 299 -11 435 281 117 18 chr3 3900858 3901029 -223623549 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr3 3902118 3902141 -223622437 + AT_rich Low_complexity Low_complexity 1 23 0 1712 122 90 41 chr3 3902818 3903161 -223621417 + MER46B DNA MER2_type 1 235 -1 305 279 108 18 chr3 3903182 3903293 -223621285 + MER5A DNA MER1_type 55 175 -14 1266 122 0 5 chr3 3903293 3903481 -223621097 - AluSg/x SINE Alu -10 302 116 356 258 139 40 chr3 3903584 3903735 -223620843 - MER21B LTR ERV1 -600 263 98 2261 121 16 0 chr3 3904024 3904330 -223620248 - AluSx SINE Alu -1 311 1 349 371 29 11 chr3 3905285 3905460 -223619118 + MIR3 SINE MIR 25 202 -6 576 228 168 0 chr3 3906920 3907069 -223617509 + MER5A DNA MER1_type 9 182 -7 197 301 12 60 chr3 3907138 3907221 -223617357 - MER5A DNA MER1_type -34 155 77 2045 119 16 10 chr3 3907250 3907560 -223617018 + AluSx SINE Alu 1 312 0 950 110 50 33 chr3 3907563 3907745 -223616833 + L1MA5 LINE L1 6108 6292 -8 25 0 0 0 chr3 3908110 3908135 -223616443 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 3908979 3909000 -223615578 + AT_rich Low_complexity Low_complexity 1 21 0 2194 104 3 7 chr3 3909014 3909303 -223615275 - AluSx SINE Alu -24 288 1 1620 178 16 48 chr3 3909440 3909563 -223615015 + AluJo SINE Alu 1 126 -186 2077 104 14 0 chr3 3909563 3909863 -223614715 - AluSx SINE Alu 0 304 1 1620 178 16 48 chr3 3909863 3910052 -223614526 + AluJo SINE Alu 126 304 -8 284 253 191 25 chr3 3910293 3910455 -223614123 - MIR SINE MIR -7 255 67 319 196 165 62 chr3 3910551 3910648 -223613930 + MER5B DNA MER1_type 67 173 -5 1669 97 9 0 chr3 3910933 3911149 -223613429 - AluSq SINE Alu -95 218 1 780 306 51 63 chr3 3912739 3913287 -223611291 + L2 LINE L2 2764 3303 -10 436 236 89 52 chr3 3915151 3915342 -223609236 - L2 LINE L2 -22 3291 3094 2335 66 3 7 chr3 3916166 3916470 -223608108 + AluY SINE Alu 5 307 -4 31 0 0 0 chr3 3916515 3916546 -223608032 + AT_rich Low_complexity Low_complexity 1 31 0 337 298 0 19 chr3 3916889 3916993 -223607585 - MIR SINE MIR -113 149 48 936 135 101 6 chr3 3918197 3918375 -223606203 + MLT1A1 LTR MaLR 170 364 -1 1052 226 73 20 chr3 3918399 3918786 -223605792 + MLT1C LTR MaLR 45 460 -7 1915 120 38 7 chr3 3920350 3920641 -223603937 - AluSx SINE Alu -12 300 1 2879 200 32 60 chr3 3920653 3920986 -223603592 - L1MB8 LINE L1 0 6178 5837 2292 75 34 0 chr3 3920986 3921278 -223603300 - AluSq SINE Alu -11 302 1 2879 200 32 60 chr3 3921278 3921520 -223603058 - L1MB8 LINE L1 -341 5837 5590 237 77 26 0 chr3 3921520 3921559 -223603019 + Alu SINE Alu 255 294 -7 2879 200 32 60 chr3 3921559 3922446 -223602132 - L1MB8 LINE L1 -588 5590 4726 261 325 0 0 chr3 3923126 3923203 -223601375 + MIR SINE MIR 84 160 -102 315 0 0 0 chr3 3923271 3923306 -223601272 + (TG)n Simple_repeat Simple_repeat 2 36 0 347 338 162 0 chr3 3923796 3923938 -223600640 - L2 LINE L2 -1 3271 3107 5594 91 20 5 chr3 3924047 3924770 -223599808 - L1PA13 LINE L1 -5 6158 5447 2352 81 0 13 chr3 3924770 3925077 -223599501 - AluY SINE Alu -8 303 1 5594 91 20 5 chr3 3925077 3925838 -223598740 - L1PA13 LINE L1 -716 5447 4631 457 332 150 31 chr3 3925922 3926341 -223598237 - L2 LINE L2 0 3313 2845 652 358 49 0 chr3 3926587 3926830 -223597748 - MIR SINE MIR -6 256 2 23 54 0 0 chr3 3927387 3927424 -223597154 + AT_rich Low_complexity Low_complexity 1 37 0 2695 112 2 10 chr3 3928168 3928586 -223595992 + L1PB1 LINE L1 5736 6150 -1 261 0 0 0 chr3 3929360 3929389 -223595189 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 225 326 112 0 chr3 3929596 3929694 -223594884 + L2 LINE L2 3156 3264 -8 443 280 26 53 chr3 3930614 3930803 -223593775 - MIR SINE MIR -50 212 29 2333 102 0 10 chr3 3931016 3931329 -223593249 + AluSg SINE Alu 1 310 0 1908 152 40 3 chr3 3932880 3933177 -223591401 - AluSx SINE Alu -4 308 1 499 286 17 28 chr3 3933227 3933405 -223591173 + L2 LINE L2 3133 3308 -5 855 189 11 194 chr3 3933491 3933953 -223590625 - LTR24 LTR ERV1 0 525 188 350 296 37 0 chr3 3934070 3934178 -223590400 + L2 LINE L2 3192 3303 -10 991 153 6 12 chr3 3934425 3934617 -223589961 - AluSq SINE Alu 0 313 123 2381 46 0 0 chr3 3935390 3935725 -223588853 + AluY SINE Alu 2 336 0 311 98 39 0 chr3 3936694 3936796 -223587782 - AluJb SINE Alu 0 331 228 1072 128 7 0 chr3 3936796 3936944 -223587634 - AluJb SINE Alu -152 160 12 465 320 53 44 chr3 3937006 3937231 -223587347 + MIR SINE MIR 13 239 -23 864 164 102 40 chr3 3937630 3937856 -223586722 - MER4B LTR ERV1 -370 240 1 459 0 0 0 chr3 3937995 3938046 -223586532 + (TG)n Simple_repeat Simple_repeat 2 52 0 238 225 42 133 chr3 3938477 3938532 -223586046 - MIR3 SINE MIR -32 176 136 1587 163 29 59 chr3 3938532 3938838 -223585740 + AluJb SINE Alu 7 303 -9 238 225 42 133 chr3 3938838 3938902 -223585676 - MIR3 SINE MIR -72 136 68 438 284 30 0 chr3 3939914 3940048 -223584530 - MIR SINE MIR -72 190 53 412 271 60 36 chr3 3940194 3940360 -223584218 + MIR SINE MIR 20 189 -73 225 0 0 0 chr3 3940644 3940669 -223583909 + (CA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr3 3940676 3940699 -223583879 + (GA)n Simple_repeat Simple_repeat 2 24 0 1574 211 109 5 chr3 3940699 3941111 -223583467 - MLT2B1 LTR ERVL -65 455 1 1960 205 99 79 chr3 3941270 3942080 -223582498 + LTR1B LTR ERV1 1 826 0 2242 107 3 0 chr3 3942624 3942932 -223581646 + AluSx SINE Alu 1 309 -3 488 297 78 21 chr3 3943117 3943309 -223581269 + MIR SINE MIR 32 234 -28 2091 107 45 0 chr3 3943317 3943606 -223580972 - AluSx SINE Alu -10 302 1 281 259 0 0 chr3 3943681 3943735 -223580843 - MIR SINE MIR -3 259 206 370 305 76 8 chr3 3944678 3944809 -223579769 + MIR SINE MIR 8 147 -115 193 293 106 49 chr3 3945151 3945274 -223579304 - L3b LINE CR1 -30 1553 1424 1963 152 0 3 chr3 3946073 3946369 -223578209 + AluJb SINE Alu 1 295 -17 698 230 94 88 chr3 3946451 3946810 -223577768 - MLT1D LTR MaLR 0 467 124 697 58 58 19 chr3 3946810 3946914 -223577664 + L1PA10 LINE L1 6055 6162 -6 698 230 94 88 chr3 3946914 3947032 -223577546 - MLT1D LTR MaLR -343 124 8 266 322 148 0 chr3 3949378 3949493 -223575085 + MIR3 SINE MIR 46 177 -31 1148 224 28 6 chr3 3949512 3949802 -223574776 - MLT1A1 LTR MaLR -8 357 50 1449 97 4 18 chr3 3951221 3951448 -223573130 - MER4E LTR ERV1 -27 739 516 2508 56 3 0 chr3 3951448 3951754 -223572824 - AluY SINE Alu -4 307 1 1792 174 24 0 chr3 3952928 3953226 -223571352 - AluJo SINE Alu -5 307 3 2373 93 3 0 chr3 3953253 3953555 -223571023 + AluSq SINE Alu 3 305 -8 1899 156 34 6 chr3 3953859 3954217 -223570361 - L1PB4 LINE L1 0 6156 5789 238 167 0 28 chr3 3954228 3954300 -223570278 + (TA)n Simple_repeat Simple_repeat 1 70 0 363 23 0 0 chr3 3954301 3954345 -223570233 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2199 128 8 23 chr3 3954347 3954446 -223570132 - L1PB4 LINE L1 -378 5778 5679 1610 211 0 3 chr3 3954446 3954745 -223569833 - AluJb SINE Alu -14 298 1 2199 128 8 23 chr3 3954745 3955034 -223569544 - L1PB4 LINE L1 -477 5679 5396 942 281 88 38 chr3 3955354 3955951 -223568627 + L2 LINE L2 2702 3313 0 349 307 0 8 chr3 3956735 3956862 -223567716 + (TTA)n Simple_repeat Simple_repeat 3 128 0 2212 226 72 14 chr3 3956928 3957500 -223567078 - MER82 DNA MER2_type -48 605 1 228 306 38 12 chr3 3957543 3957703 -223566875 + L1ME2 LINE L1 4978 5141 -1005 495 286 97 49 chr3 3957806 3958291 -223566287 + L1ME2 LINE L1 5270 5793 -371 2279 89 3 7 chr3 3958291 3958595 -223565983 - AluSx SINE Alu -8 304 2 495 286 97 49 chr3 3958595 3958741 -223565837 + L1ME2 LINE L1 5793 5931 -233 297 0 0 0 chr3 3958801 3958834 -223565744 + (CA)n Simple_repeat Simple_repeat 1 33 0 797 258 18 35 chr3 3959080 3959309 -223565269 + MIR SINE MIR 32 256 -6 783 186 0 0 chr3 3959473 3959597 -223564981 - FLAM_A SINE Alu -9 124 1 2330 84 0 7 chr3 3959628 3959924 -223564654 + AluSq SINE Alu 1 294 -19 189 0 0 0 chr3 3961821 3961842 -223562736 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 276 77 0 0 chr3 3961841 3961880 -223562698 + (TG)n Simple_repeat Simple_repeat 2 40 0 1813 169 10 3 chr3 3962466 3962762 -223561816 - AluJo SINE Alu -10 302 5 290 296 148 7 chr3 3966194 3966336 -223558242 - L2 LINE L2 -191 3081 2920 23 0 0 0 chr3 3967339 3967362 -223557216 + AT_rich Low_complexity Low_complexity 1 23 0 2087 92 10 26 chr3 3967586 3967892 -223556686 + AluY SINE Alu 1 301 -10 2146 117 0 7 chr3 3968011 3968309 -223556269 + AluSx SINE Alu 1 296 -16 2406 59 0 3 chr3 3968626 3968931 -223555647 - AluY SINE Alu -6 305 2 1100 62 0 0 chr3 4069357 4069487 -223455091 + AluSg/x SINE Alu 171 300 -12 335 207 16 107 chr3 4069492 4069613 -223454965 - MIR SINE MIR -108 154 45 1429 159 96 7 chr3 4069613 4069884 -223454694 + AluJb SINE Alu 1 295 -17 338 363 55 31 chr3 4070879 4071204 -223453374 + LTR16C LTR ERVL 149 481 -10 566 283 11 11 chr3 4071228 4071412 -223453166 + Charlie7 DNA MER1_type 314 497 -2115 278 149 21 0 chr3 4071833 4071880 -223452698 - Charlie8 DNA MER1_type -1006 1411 1364 2135 123 3 0 chr3 4071952 4072252 -223452326 - AluSx SINE Alu -11 301 1 376 249 115 91 chr3 4072499 4072693 -223451885 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 4072693 4072974 -223451604 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 4072974 4073032 -223451546 + L1ME4a LINE L1 5834 5889 -232 273 180 16 141 chr3 4073120 4073248 -223451330 - MLT1H LTR MaLR 0 549 438 1526 196 70 40 chr3 4073675 4073951 -223450627 + L1MC/D LINE L1 4789 5082 -1064 2267 110 0 10 chr3 4073951 4074260 -223450318 - AluSx SINE Alu -1 311 6 1526 196 70 40 chr3 4074260 4074385 -223450193 + L1MC/D LINE L1 5082 5202 -944 1038 209 60 18 chr3 4074385 4074667 -223449911 + AluSx SINE Alu 1 294 -8 431 236 183 21 chr3 4075022 4075213 -223449365 + L1MC/D LINE L1 5296 5517 -2291 1704 75 0 0 chr3 4075255 4075468 -223449110 - AluSg SINE Alu -97 213 1 257 109 455 0 chr3 4075919 4075974 -223448604 - MADE1 DNA Mariner 0 80 1 1838 149 35 0 chr3 4076363 4076479 -223448099 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 4076479 4076525 -223448053 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1838 149 35 0 chr3 4076525 4076696 -223447882 + AluSx SINE Alu 112 298 -14 865 233 106 24 chr3 4077025 4077317 -223447261 - L2 LINE L2 -429 2885 2570 1804 161 7 20 chr3 4077346 4077644 -223446934 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 4077647 4077670 -223446908 + (TA)n Simple_repeat Simple_repeat 2 24 0 224 338 13 0 chr3 4078813 4078890 -223445688 - MIR SINE MIR -63 145 68 421 243 59 44 chr3 4079977 4080113 -223444465 - MIR3 SINE MIR -23 185 48 22 0 0 0 chr3 4080214 4080236 -223444342 + AT_rich Low_complexity Low_complexity 1 22 0 2030 63 0 0 chr3 4080521 4080760 -223443818 + AluY SINE Alu 72 310 -1 2002 94 91 0 chr3 4080766 4081041 -223443537 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr3 4081502 4081526 -223443052 + AT_rich Low_complexity Low_complexity 1 24 0 285 293 113 7 chr3 4081532 4081682 -223442896 - L1ME4a LINE L1 0 6121 5956 448 246 36 27 chr3 4081944 4082054 -223442524 - AluSp SINE Alu -104 209 99 1205 222 122 47 chr3 4082054 4082502 -223442076 + L1M4 LINE L1 3051 3464 -2682 2152 113 0 0 chr3 4082502 4082810 -223441768 - AluSx SINE Alu 0 308 1 2219 106 0 0 chr3 4082816 4083130 -223441448 - AluSx SINE Alu 0 314 1 1205 222 122 47 chr3 4083130 4083245 -223441333 + L1M4 LINE L1 3468 3666 -2480 669 228 39 22 chr3 4085043 4085223 -223439355 + MER3 DNA MER1_type 1 183 -26 276 289 75 54 chr3 4085434 4085673 -223438905 + L2 LINE L2 2734 2977 -337 2399 58 0 3 chr3 4085742 4086034 -223438544 + AluY SINE Alu 1 291 -20 647 230 15 0 chr3 4087102 4087237 -223437341 + MER3 DNA MER1_type 2 138 -71 2137 129 0 19 chr3 4087243 4087554 -223437024 + AluSg SINE Alu 1 305 -5 202 358 0 0 chr3 4087823 4087890 -223436688 - L2 LINE L2 -1 3271 3205 311 327 58 13 chr3 4088027 4088183 -223436395 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 4088224 4088257 -223436321 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 552 188 240 19 chr3 4088435 4088589 -223435989 - MER53 DNA DNA 0 189 2 2330 98 7 0 chr3 4088849 4089156 -223435422 - AluSp SINE Alu -4 309 1 325 246 144 8 chr3 4089426 4089544 -223435034 - L2 LINE L2 -10 3303 3170 2358 64 3 0 chr3 4090696 4090993 -223433585 - AluY SINE Alu -13 298 1 270 56 0 0 chr3 4091907 4091943 -223432635 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 221 222 79 32 chr3 4092250 4092313 -223432265 + MIR3 SINE MIR 129 194 -14 225 0 0 0 chr3 4092372 4092397 -223432181 + (TG)n Simple_repeat Simple_repeat 2 26 0 2034 121 0 0 chr3 4092402 4092684 -223431894 - AluSx SINE Alu -30 282 1 1920 122 15 0 chr3 4094945 4095216 -223429362 - AluSx SINE Alu -24 288 14 874 153 127 0 chr3 4095266 4095416 -223429162 + MER6B DNA MER2_type 37 205 -5 1818 192 68 21 chr3 4095699 4096127 -223428451 - MLT1C LTR MaLR -2 465 18 2156 125 0 3 chr3 4096356 4096660 -223427918 - AluSx SINE Alu -9 303 1 1152 149 123 0 chr3 4096951 4097146 -223427432 + MER20 DNA MER1_type 1 219 0 2227 103 7 0 chr3 4097586 4097886 -223426692 - AluSp SINE Alu -11 302 1 276 87 0 43 chr3 4098498 4098544 -223426034 - L2 LINE L2 -75 3238 3195 2009 138 6 6 chr3 4099379 4099691 -223424887 - AluSx SINE Alu 0 312 1 2139 95 18 7 chr3 4100004 4100307 -223424271 - AluSq SINE Alu 0 306 1 492 307 81 45 chr3 4101586 4101918 -223422660 - L2 LINE L2 -18 3295 2952 690 120 88 16 chr3 4101969 4102094 -223422484 + MER46A DNA MER2_type 103 236 0 2183 43 64 25 chr3 4102115 4102396 -223422182 + AluY SINE Alu 2 293 -18 854 192 48 12 chr3 4102674 4102841 -223421737 + L1MC4 LINE L1 6725 6897 -1145 10094 38 27 87 chr3 4102979 4104436 -223420142 + SVA Other Other 52 1595 -470 2028 151 0 3 chr3 4104436 4104748 -223419830 + AluSq SINE Alu 1 311 -2 2311 113 0 0 chr3 4104750 4105061 -223419517 + AluSx SINE Alu 1 311 -1 10094 38 27 87 chr3 4105061 4105078 -223419500 + SVA Other Other 1596 2065 0 893 81 16 0 chr3 4105081 4105204 -223419374 + FLAM_C SINE Alu 1 125 -18 1564 199 28 0 chr3 4105215 4105497 -223419081 - MER63B DNA MER1_type -146 290 1 22 0 0 0 chr3 4105528 4105550 -223419028 + AT_rich Low_complexity Low_complexity 1 22 0 1898 162 0 9 chr3 4105675 4105990 -223418588 - AluSx SINE Alu 0 312 1 697 233 43 0 chr3 4105995 4106158 -223418420 + MIR SINE MIR 61 230 -32 1382 144 0 19 chr3 4106160 4106375 -223418203 + AluSx SINE Alu 3 213 -99 31 0 0 0 chr3 4106865 4106896 -223417682 + AT_rich Low_complexity Low_complexity 1 31 0 1761 86 9 0 chr3 4106896 4107129 -223417449 - L1MA2 LINE L1 0 6304 6070 1916 144 0 34 chr3 4107218 4107538 -223417040 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 4108923 4108944 -223415634 + AT_rich Low_complexity Low_complexity 1 21 0 2392 71 7 3 chr3 4109606 4109902 -223414676 - AluSq SINE Alu -16 297 1 482 212 157 47 chr3 4110817 4111020 -223413558 + MIR SINE MIR 17 237 -25 2026 131 10 0 chr3 4111065 4111356 -223413222 + AluSx SINE Alu 1 294 -18 231 235 39 0 chr3 4111421 4111472 -223413106 + L1MC/D LINE L1 5451 5503 -2305 600 210 50 0 chr3 4111480 4111599 -223412979 + FAM SINE Alu 35 159 -26 841 189 211 32 chr3 4111680 4112078 -223412500 - LTR54B LTR ERV1 0 510 2 2025 124 14 0 chr3 4112091 4112382 -223412196 + AluSx SINE Alu 2 296 -16 2141 86 41 3 chr3 4112939 4113229 -223411349 + AluY SINE Alu 1 301 -10 371 266 107 35 chr3 4113625 4113794 -223410784 - MIR3 SINE MIR -6 202 22 22 35 0 0 chr3 4116439 4116468 -223408110 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 4117797 4117818 -223406760 + (A)n Simple_repeat Simple_repeat 1 21 0 769 144 23 0 chr3 4118518 4118650 -223405928 - L1MA7 LINE L1 -2 6289 6155 2263 105 0 0 chr3 4118713 4119009 -223405569 + AluSx SINE Alu 1 296 -16 554 273 126 25 chr3 4119269 4119507 -223405071 - MIR SINE MIR 0 262 1 1600 158 3 44 chr3 4119785 4120082 -223404496 + AluJo SINE Alu 18 302 -10 910 118 7 29 chr3 4120140 4120276 -223404302 + FLAM_C SINE Alu 1 133 0 1978 118 21 3 chr3 4120378 4120666 -223403912 + AluSx SINE Alu 1 293 -19 268 152 30 0 chr3 4122417 4122483 -223402095 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1278 228 59 62 chr3 4122592 4122901 -223401677 - MER49 LTR ERV1 0 923 614 2062 139 3 10 chr3 4122901 4123211 -223401367 + AluSx SINE Alu 1 308 -4 1278 228 59 62 chr3 4123211 4123305 -223401273 - MER49 LTR ERV1 -309 614 521 1061 86 0 7 chr3 4123307 4123446 -223401132 + AluYb8 SINE Alu 1 138 -180 2340 106 3 0 chr3 4123448 4123759 -223400819 + AluSx SINE Alu 1 312 0 1128 128 32 23 chr3 4123760 4124100 -223400478 - MER49 LTR ERV1 -389 534 152 2675 36 0 3 chr3 4124100 4124406 -223400172 - AluY SINE Alu -2 309 5 186 310 0 69 chr3 4124502 4124589 -223399989 + MIR SINE MIR 33 113 -149 22 0 0 0 chr3 4124641 4124663 -223399915 + AT_rich Low_complexity Low_complexity 1 22 0 1223 91 32 43 chr3 4125182 4125368 -223399210 - AluSc SINE Alu -125 184 1 309 245 96 11 chr3 4125650 4125744 -223398834 - MER69 DNA AcHobo 0 2526 2425 927 209 90 0 chr3 4125744 4125945 -223398633 + L1MD2 LINE L1 5944 6162 -197 1080 230 0 30 chr3 4125945 4126180 -223398398 + AluSq SINE Alu 1 228 -85 352 173 0 0 chr3 4126283 4126335 -223398243 - Alu SINE Alu -250 52 1 1875 115 6 74 chr3 4126343 4126509 -223398069 - AluSx SINE Alu -21 291 154 2412 79 0 0 chr3 4126509 4126801 -223397777 - AluSg SINE Alu -5 305 14 1875 115 6 74 chr3 4126801 4126946 -223397632 - AluSx SINE Alu -158 154 1 334 191 32 0 chr3 4126950 4127013 -223397565 + MER97b DNA MER1_type? 113 177 -876 861 212 4 100 chr3 4127132 4127373 -223397205 + MER20 DNA MER1_type 2 219 0 285 318 171 0 chr3 4127594 4127764 -223396814 - MIR SINE MIR -12 250 52 771 174 0 14 chr3 4127830 4127968 -223396610 + AluJ SINE Alu 2 137 -175 1075 146 6 0 chr3 4128019 4128190 -223396388 + AluJ SINE Alu 141 312 0 2054 119 24 10 chr3 4128486 4128781 -223395797 - AluSx SINE Alu -13 299 1 1804 171 4 4 chr3 4129021 4129302 -223395276 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr3 4129351 4129373 -223395205 + AT_rich Low_complexity Low_complexity 1 22 0 1326 181 115 0 chr3 4129374 4129662 -223394916 + L1MC2 LINE L1 6002 6322 -22 1020 145 0 13 chr3 4129669 4129847 -223394731 - AluSg/x SINE Alu 0 307 132 2407 104 0 0 chr3 4129847 4130156 -223394422 - AluSx SINE Alu -3 309 1 1817 157 13 53 chr3 4130167 4130485 -223394093 - AluSx SINE Alu -7 305 1 406 257 40 5 chr3 4130583 4130707 -223393871 - MIR3 SINE MIR -21 187 59 2044 125 3 27 chr3 4130708 4131005 -223393573 - AluSx SINE Alu -22 290 1 687 172 0 16 chr3 4131214 4131336 -223393242 + FRAM SINE Alu 57 176 0 1937 131 52 3 chr3 4131341 4131631 -223392947 + AluSx SINE Alu 1 304 -8 2198 100 0 0 chr3 4132080 4132359 -223392219 + AluY SINE Alu 1 279 -32 180 0 0 0 chr3 4132361 4132381 -223392197 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 234 213 82 16 chr3 4132448 4132509 -223392069 + LTR8 LTR ERV1 238 302 -389 400 115 0 16 chr3 4132944 4133005 -223391573 + AluS SINE Alu 2 61 -257 2277 97 0 3 chr3 4134598 4134887 -223389691 - AluSx SINE Alu -24 288 1 185 0 0 39 chr3 4135046 4135072 -223389506 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2200 111 0 7 chr3 4135176 4135473 -223389105 - AluSq SINE Alu -18 295 1 375 229 99 15 chr3 4135858 4135989 -223388589 - LTR16A1 LTR ERVL -3 454 313 258 333 11 0 chr3 4136591 4136681 -223387897 + MLT1F1 LTR MaLR 5 95 -498 970 251 127 39 chr3 4136803 4137080 -223387498 + MLT1F1 LTR MaLR 104 415 -152 1672 122 80 0 chr3 4137080 4137317 -223387261 - AluSx SINE Alu -13 299 44 970 251 127 39 chr3 4137317 4137484 -223387094 + MLT1F1 LTR MaLR 415 566 -1 304 269 172 27 chr3 4137517 4137703 -223386875 - L1ME4a LINE L1 -227 5894 5682 2699 40 0 0 chr3 4137711 4138013 -223386565 + AluYb8 SINE Alu 1 302 -16 1269 96 0 0 chr3 4138013 4138179 -223386399 + AluYa5 SINE Alu 133 298 -13 2079 154 0 0 chr3 4138205 4138504 -223386074 + AluSx SINE Alu 1 299 -13 726 254 11 0 chr3 4138764 4138941 -223385637 - MER5A DNA MER1_type -8 181 3 287 263 25 12 chr3 4139314 4139394 -223385184 + MLT1K LTR MaLR 477 557 -31 239 200 38 113 chr3 4140221 4140301 -223384277 - L2 LINE L2 -40 3273 3200 318 26 0 0 chr3 4140306 4140345 -223384233 + (GA)n Simple_repeat Simple_repeat 2 40 0 937 238 75 77 chr3 4140402 4140855 -223383723 + MER110A LTR ERV1 3 454 -14 459 0 0 0 chr3 4140973 4141024 -223383554 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2162 99 3 11 chr3 4141027 4141310 -223383268 - AluSx SINE Alu -30 282 2 503 81 0 0 chr3 4141319 4141393 -223383185 - Alu SINE Alu -10 301 228 425 175 0 25 chr3 4141394 4141474 -223383104 + MER65A LTR ERV1 35 112 -333 960 211 10 10 chr3 4141621 4141825 -223382753 - AluSx SINE Alu -108 204 1 2485 89 2 63 chr3 4141827 4142286 -223382292 - MER4A LTR ERV1 -271 393 1 2078 121 28 0 chr3 4143417 4143706 -223380872 - AluSx SINE Alu -13 299 3 271 268 97 48 chr3 4143834 4144103 -223380475 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 4144344 4144375 -223380203 + AT_rich Low_complexity Low_complexity 1 31 0 1135 138 29 0 chr3 4144375 4144549 -223380029 - AluJb SINE Alu -13 299 121 1503 181 42 21 chr3 4144639 4144926 -223379652 - AluJo SINE Alu -19 293 1 262 180 67 90 chr3 4147095 4147184 -223377394 - L1MC5 LINE L1 -44 7917 7831 1694 189 7 3 chr3 4147206 4147508 -223377070 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 4147703 4147738 -223376840 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 4147814 4147837 -223376741 + AT_rich Low_complexity Low_complexity 1 23 0 1796 158 0 55 chr3 4147838 4148168 -223376410 - AluJb SINE Alu 0 312 1 225 296 25 12 chr3 4148190 4148271 -223376307 - L1ME4a LINE L1 -463 5658 5577 1631 213 81 31 chr3 4148875 4149408 -223375170 - MLT1F1 LTR MaLR 0 567 2 2361 100 0 0 chr3 4149684 4149983 -223374595 - AluSg SINE Alu -11 299 1 2162 120 0 3 chr3 4150976 4151285 -223373293 - AluSx SINE Alu -4 308 1 354 23 0 0 chr3 4152356 4152399 -223372179 + (CA)n Simple_repeat Simple_repeat 1 43 0 965 160 209 13 chr3 4152402 4152627 -223371951 + L1MB3 LINE L1 5914 6182 -1 21 71 0 0 chr3 4152712 4152754 -223371824 + AT_rich Low_complexity Low_complexity 1 42 0 1476 186 13 68 chr3 4153329 4153636 -223370942 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 4153969 4154109 -223370469 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 4154167 4154315 -223370263 - Tigger7 DNA MER2_type -1 2486 2339 344 171 100 0 chr3 4154334 4154404 -223370174 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 4154601 4154744 -223369834 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 4155062 4155351 -223369227 + AluSx SINE Alu 1 301 -11 2300 105 0 0 chr3 4155362 4155657 -223368921 + AluSc SINE Alu 1 295 -14 1650 235 92 74 chr3 4156490 4157283 -223367295 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 4157480 4157715 -223366863 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 4157817 4158112 -223366466 - AluSx SINE Alu -18 294 2 1247 170 42 55 chr3 4158351 4158413 -223366165 + L1PA16 LINE L1 5875 5936 -230 2156 127 3 0 chr3 4158413 4158712 -223365866 + AluSx SINE Alu 1 300 -12 1247 170 42 55 chr3 4158712 4158938 -223365640 + L1PA16 LINE L1 5936 6159 -7 196 282 0 0 chr3 4159984 4160023 -223364555 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 4160506 4160791 -223363787 + AluJo SINE Alu 6 289 -23 214 274 0 3 chr3 4161727 4161797 -223362781 - MIR SINE MIR -80 128 59 282 196 0 0 chr3 4161798 4161844 -223362734 - Alu SINE Alu -12 289 244 2503 90 3 0 chr3 4162089 4162400 -223362178 - AluSp SINE Alu 0 313 2 1183 152 11 11 chr3 4162400 4162583 -223361995 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 4162584 4162631 -223361947 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 4162635 4162739 -223361839 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 4163089 4163321 -223361257 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 4163379 4163439 -223361139 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 4163439 4163749 -223360829 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 4163749 4163961 -223360617 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 4164512 4164680 -223359898 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 4164816 4165001 -223359577 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 4165006 4165329 -223359249 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 4165332 4165519 -223359059 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 4165519 4165812 -223358766 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 4165812 4166687 -223357891 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 4166687 4166986 -223357592 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 4166988 4167163 -223357415 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 4167168 4167384 -223357194 + AluSg/x SINE Alu 82 296 -16 2095 202 95 97 chr3 4167413 4168145 -223356433 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 4168145 4168507 -223356071 - THE1B LTR MaLR -1 363 1 2095 202 95 97 chr3 4168507 4168941 -223355637 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 4168941 4169209 -223355369 + AluJo SINE Alu 6 273 -39 2095 202 95 97 chr3 4169209 4169714 -223354864 + L1MDa LINE L1 2634 3139 -3401 1201 199 65 43 chr3 4169714 4169991 -223354587 + AluJb SINE Alu 3 285 -17 2095 202 95 97 chr3 4169991 4170272 -223354306 + L1MDa LINE L1 3139 3419 -3121 277 118 0 0 chr3 4170372 4170423 -223354155 + MER39B LTR ERV1 62 112 -541 583 340 20 8 chr3 4171127 4171377 -223353201 + HERVI LTR ERV1 718 970 -6815 5328 308 45 45 chr3 4171603 4172564 -223352014 + HERVI LTR ERV1 954 1914 -5871 2938 86 43 5 chr3 4172564 4172985 -223351593 + L1PA5 LINE L1 5717 6153 -1 5328 308 45 45 chr3 4172985 4176431 -223348147 + HERVI LTR ERV1 1914 5756 -2029 2179 304 39 43 chr3 4177323 4178551 -223346027 + HERVI LTR ERV1 6425 7647 -138 2290 136 5 35 chr3 4179458 4179833 -223344745 - THE1B LTR MaLR 0 364 1 685 83 0 0 chr3 4179929 4180025 -223344553 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 4180914 4180940 -223343638 + AT_rich Low_complexity Low_complexity 1 26 0 281 210 155 81 chr3 4181508 4181645 -223342933 - MIR SINE MIR -62 146 2 799 160 23 0 chr3 4182121 4182252 -223342326 + AluJo SINE Alu 2 135 -177 2155 115 3 10 chr3 4182270 4182584 -223341994 + AluSx SINE Alu 1 312 0 320 317 254 5 chr3 4182748 4182953 -223341625 - MIR SINE MIR -6 256 1 389 146 0 0 chr3 4183798 4183853 -223340725 + AluSg/x SINE Alu 194 248 -52 808 165 61 91 chr3 4183853 4183893 -223340685 + AluSg/x SINE Alu 83 123 -187 210 37 0 0 chr3 4183893 4183920 -223340658 + (TAA)n Simple_repeat Simple_repeat 3 29 0 1969 112 0 3 chr3 4183920 4184251 -223340327 + AluSx SINE Alu 1 330 0 2151 101 0 0 chr3 4184251 4184538 -223340040 + AluSg SINE Alu 1 287 -23 808 165 61 91 chr3 4184538 4184724 -223339854 + AluSg/x SINE Alu 120 305 -5 1891 139 0 3 chr3 4184859 4185153 -223339425 + AluSx SINE Alu 1 293 -19 1319 164 21 52 chr3 4186073 4186360 -223338218 - AluJb SINE Alu -30 282 5 335 328 156 16 chr3 4186887 4187015 -223337563 + L2 LINE L2 3126 3271 -1 189 0 0 0 chr3 4187297 4187318 -223337260 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 276 256 61 12 chr3 4187319 4187401 -223337177 - L2 LINE L2 -18 3295 3210 1913 83 65 7 chr3 4187469 4187746 -223336832 + AluSx SINE Alu 1 293 -19 1502 181 13 24 chr3 4187834 4188132 -223336446 + AluJo SINE Alu 14 308 -4 2333 81 0 0 chr3 4188317 4188613 -223335965 + AluSx SINE Alu 1 296 -16 1754 106 124 4 chr3 4188803 4189078 -223335500 + AluSg SINE Alu 1 308 -2 1477 145 67 32 chr3 4189191 4189474 -223335104 + AluSx SINE Alu 1 293 -19 787 154 0 8 chr3 4189684 4189814 -223334764 + AluJ SINE Alu 1 129 -173 2065 140 0 0 chr3 4189845 4190152 -223334426 + AluSx SINE Alu 1 307 -5 420 188 0 59 chr3 4190183 4190284 -223334294 - AluJ/FLAM SINE Alu -216 96 2 859 184 0 36 chr3 4190302 4190470 -223334108 + AluJ SINE Alu 129 290 -22 1177 130 0 0 chr3 4190678 4190855 -223333723 + AluSq SINE Alu 133 309 -4 303 171 239 34 chr3 4190872 4190989 -223333589 + L1ME LINE L1 5538 5678 -443 662 134 0 25 chr3 4191207 4191326 -223333252 - AluSq/x SINE Alu -196 117 2 21 0 0 0 chr3 4191586 4191607 -223332971 + AT_rich Low_complexity Low_complexity 1 21 0 1692 157 7 20 chr3 4192534 4192834 -223331744 + AluSx SINE Alu 1 296 -16 382 296 53 59 chr3 4193533 4193702 -223330876 + MER5A DNA MER1_type 22 189 0 1682 150 10 20 chr3 4194012 4194145 -223330433 + AluJo SINE Alu 1 134 -178 2045 106 0 64 chr3 4194145 4194475 -223330103 + AluSg SINE Alu 1 309 -1 1682 150 10 20 chr3 4194475 4194634 -223329944 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 4195436 4195458 -223329120 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 4195570 4195658 -223328920 + L2 LINE L2 3221 3308 -5 1776 136 52 0 chr3 4195737 4196024 -223328554 + AluJb SINE Alu 1 302 -10 1217 111 0 0 chr3 4196114 4196285 -223328293 + AluSp SINE Alu 132 302 -11 187 111 0 0 chr3 4196845 4196872 -223327706 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 4197161 4197239 -223327339 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 4197239 4197520 -223327058 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 4197520 4197612 -223326966 + MIR SINE MIR 163 262 0 1229 134 113 79 chr3 4197812 4198104 -223326474 + AluJo SINE Alu 1 302 0 1536 110 4 25 chr3 4198116 4198361 -223326217 + AluSq SINE Alu 67 306 -7 242 303 121 0 chr3 4199090 4199189 -223325389 - L2 LINE L2 -1 3271 3161 1211 158 63 60 chr3 4199605 4199890 -223324688 + AluJo SINE Alu 23 308 -4 677 159 0 90 chr3 4200369 4200403 -223324175 - MER94 DNA DNA -1 133 98 2091 110 3 13 chr3 4200403 4200702 -223323876 - AluSx SINE Alu -16 296 1 677 159 0 90 chr3 4200702 4200812 -223323766 - MER94 DNA DNA -36 98 2 2198 157 60 35 chr3 4200851 4201303 -223323275 + MLT1C LTR MaLR 5 467 0 2339 107 22 19 chr3 4201426 4201792 -223322786 - L1PA16 LINE L1 0 6166 5800 2067 118 10 0 chr3 4201793 4202089 -223322489 - AluSq SINE Alu -14 299 1 2132 129 0 0 chr3 4202662 4202973 -223321605 + AluSx SINE Alu 1 311 -1 1989 135 0 3 chr3 4203162 4203466 -223321112 + AluSq SINE Alu 1 303 -10 2050 119 14 0 chr3 4203470 4203764 -223320814 + AluSx SINE Alu 1 298 -14 1789 127 3 67 chr3 4204349 4204664 -223319914 + AluSp SINE Alu 1 295 -18 1989 130 13 0 chr3 4204719 4205018 -223319560 + AluSg SINE Alu 1 303 -7 2496 135 46 14 chr3 4205511 4205911 -223318667 - MER65A LTR ERV1 0 445 29 1905 126 0 0 chr3 4205911 4206182 -223318396 - AluSx SINE Alu -41 271 1 2496 135 46 14 chr3 4206182 4206212 -223318366 - MER65A LTR ERV1 -416 29 1 770 170 7 22 chr3 4206247 4206382 -223318196 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 4206460 4206526 -223318052 + GA-rich Low_complexity Low_complexity 4 67 0 343 263 32 0 chr3 4206536 4206631 -223317947 + MER97c DNA MER1_type? 27 124 -966 242 140 0 20 chr3 4206658 4206708 -223317870 + (TCC)n Simple_repeat Simple_repeat 1 49 0 269 361 28 24 chr3 4207498 4207711 -223316867 - AluJo SINE Alu -57 245 32 * 836 155 39 19 chr3 4207706 4207861 -223316717 - MLT1D LTR MaLR -19 486 329 240 188 277 0 chr3 4207927 4208028 -223316550 + MER77 LTR ERV1 144 272 -333 2339 152 6 0 chr3 4208028 4208364 -223316214 + MER1B DNA MER1_type 1 338 -1 180 0 0 0 chr3 4208372 4208392 -223316186 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 730 292 142 14 chr3 4208393 4208674 -223315904 + MER77 LTR ERV1 278 594 -11 476 207 122 49 chr3 4208791 4208955 -223315623 + MIR SINE MIR 70 245 -17 402 216 43 126 chr3 4208955 4209105 -223315473 + MER106A DNA MER1_type 1 123 -113 691 228 0 0 chr3 4209105 4209228 -223315350 + FLAM_A SINE Alu 1 123 -10 402 216 43 126 chr3 4209228 4209332 -223315246 + MER106A DNA MER1_type 123 234 -2 798 267 89 71 chr3 4210370 4210435 -223314143 - MLT1K LTR MaLR -63 525 463 3517 128 4 28 chr3 4210435 4210975 -223313603 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 4210975 4211302 -223313276 - MLT1K LTR MaLR -125 463 126 261 225 0 0 chr3 4211520 4211609 -223312969 + (TTTA)n Simple_repeat Simple_repeat 2 90 0 292 225 113 0 chr3 4211624 4211695 -223312883 + L2 LINE L2 3194 3272 0 2654 123 31 2 chr3 4211712 4212128 -223312450 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 4212368 4212497 -223312081 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 4213017 4213167 -223311411 - MIR SINE MIR -74 188 21 911 176 23 0 chr3 4213621 4213797 -223310781 - FRAM SINE Alu -1 175 1 2087 107 7 3 chr3 4213988 4214279 -223310299 + AluSq SINE Alu 1 292 -21 1211 140 45 0 chr3 4214427 4214627 -223309951 - L1MA5A LINE L1 -4 6293 6085 2634 80 33 145 chr3 4214902 4215161 -223309417 + MER39B LTR ERV1 1 287 -366 930 113 0 0 chr3 4215161 4215285 -223309293 + FLAM_C SINE Alu 1 124 -9 2634 80 33 145 chr3 4215285 4215330 -223309248 + MER39B LTR ERV1 287 335 -318 773 191 8 0 chr3 4215330 4215487 -223309091 + FLAM_C SINE Alu 1 158 0 2634 80 33 145 chr3 4215487 4215690 -223308888 + MER39B LTR ERV1 335 453 -200 801 250 35 0 chr3 4215685 4215885 -223308693 + Charlie2a DNA MER1_type 1520 1726 -1136 * 2140 153 103 7 chr3 4215885 4216310 -223308268 + Tigger2 DNA MER2_type 1 466 -2252 749 221 0 0 chr3 4216316 4216461 -223308117 + AluSg/x SINE Alu 135 279 -31 321 100 0 0 chr3 4216463 4216513 -223308065 + (CA)n Simple_repeat Simple_repeat 2 51 0 2335 124 48 3 chr3 4216519 4216890 -223307688 + Tigger2 DNA MER2_type 2331 2718 0 2018 213 164 41 chr3 4216893 4217302 -223307276 + Charlie2a DNA MER1_type 1727 2084 -778 2215 115 0 3 chr3 4217302 4217614 -223306964 + AluJo SINE Alu 1 311 -1 2018 213 164 41 chr3 4217614 4218087 -223306491 + Charlie2a DNA MER1_type 2084 2718 -144 3106 123 115 17 chr3 4218665 4219254 -223305324 + LTR24C LTR ERV1 2 466 -1 273 109 0 0 chr3 4219434 4219480 -223305098 + (CA)n Simple_repeat Simple_repeat 1 46 0 330 296 111 19 chr3 4219745 4219907 -223304671 - MIR SINE MIR -67 195 19 690 210 50 22 chr3 4219990 4220171 -223304407 - MIR SINE MIR -49 213 28 2111 109 0 3 chr3 4220495 4220799 -223303779 + AluSx SINE Alu 4 306 -6 21 0 0 0 chr3 4222467 4222488 -223302090 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 4222958 4222979 -223301599 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 4223566 4223591 -223300987 + AT_rich Low_complexity Low_complexity 1 25 0 568 229 41 0 chr3 4224901 4225023 -223299555 + FLAM_A SINE Alu 1 127 -6 23 0 0 0 chr3 4225023 4225046 -223299532 + AT_rich Low_complexity Low_complexity 1 23 0 857 200 62 19 chr3 4225580 4225790 -223298788 - MER20 DNA MER1_type 0 219 1 260 275 142 8 chr3 4226262 4226382 -223298196 + L2 LINE L2 2923 3058 -214 620 215 135 35 chr3 4226586 4226786 -223297792 + MIR SINE MIR 43 262 0 235 139 0 0 chr3 4227335 4227371 -223297207 + LTR33 LTR ERVL 3 38 -483 230 299 21 21 chr3 4227638 4227735 -223296843 + LTR33 LTR ERVL 411 507 -14 224 273 28 125 chr3 4228165 4228341 -223296237 + MER5B DNA MER1_type 3 161 -17 272 272 62 0 chr3 4228398 4228479 -223296099 + L2 LINE L2 3150 3235 -37 197 275 114 30 chr3 4228712 4228843 -223295735 - MIR3 SINE MIR -66 142 1 195 229 14 71 chr3 4229150 4229220 -223295358 - MER5A DNA MER1_type -36 153 88 358 280 42 52 chr3 4229442 4229635 -223294943 + MIR3 SINE MIR 3 193 -15 291 71 0 0 chr3 4229643 4229685 -223294893 + (CA)n Simple_repeat Simple_repeat 2 43 0 266 307 89 9 chr3 4230630 4230855 -223293723 + L1ME4a LINE L1 5879 6121 0 438 333 0 0 chr3 4333143 4333254 -223191324 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 4333262 4333285 -223191293 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 4333344 4333731 -223190847 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 4334628 4334778 -223189800 - MER5A DNA MER1_type -10 179 1 598 172 0 0 chr3 4334913 4335000 -223189578 - AluJ/FLAM SINE Alu -224 88 2 3029 249 57 23 chr3 4335103 4336133 -223188445 - L1M4 LINE L1 -1790 4356 3292 308 64 21 0 chr3 4336162 4336209 -223188369 + (TC)n Simple_repeat Simple_repeat 1 48 0 1006 213 189 7 chr3 4336209 4336285 -223188293 - MER2 DNA MER2_type 0 344 283 2314 92 0 0 chr3 4336285 4336580 -223187998 + AluSx SINE Alu 5 299 -13 1006 213 189 7 chr3 4336580 4336794 -223187784 - MER2 DNA MER2_type -61 283 1 1828 97 37 23 chr3 4337352 4337652 -223186926 + AluSq SINE Alu 1 304 -9 530 172 83 6 chr3 4339259 4339416 -223185162 - PABL_B LTR ERV1 -9 658 490 466 269 304 0 chr3 4340222 4340393 -223184185 + MIR SINE MIR 39 261 -1 416 253 111 25 chr3 4340512 4340832 -223183746 + MLT1K LTR MaLR 158 553 -35 22 0 0 0 chr3 4340954 4340976 -223183602 + AT_rich Low_complexity Low_complexity 1 22 0 396 261 17 25 chr3 4341595 4341714 -223182864 + MLT1K LTR MaLR 132 249 -339 216 0 0 0 chr3 4341726 4341750 -223182828 + (T)n Simple_repeat Simple_repeat 1 24 0 270 265 43 13 chr3 4342010 4342114 -223182464 + L1MCa LINE L1 1 84 -5961 921 274 29 29 chr3 4342122 4342432 -223182146 + L1MCa LINE L1 277 586 -5459 555 190 76 63 chr3 4342491 4342649 -223181929 + L1MCa LINE L1 555 714 -5331 935 192 135 0 chr3 4342755 4342948 -223181630 - MSTA LTR MaLR -209 219 1 245 167 42 0 chr3 4342949 4342997 -223181581 + L1ME1 LINE L1 6111 6160 -6 1738 139 58 41 chr3 4343463 4343758 -223180820 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4344097 4344123 -223180455 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 546 278 131 0 chr3 4344198 4344374 -223180204 - MIR SINE MIR -32 230 32 670 178 8 0 chr3 4344714 4344832 -223179746 - MLT1D LTR MaLR 0 505 387 2266 104 0 0 chr3 4345041 4345339 -223179239 - AluSx SINE Alu -3 309 12 1501 195 3 36 chr3 4345562 4345870 -223178708 + AluJo SINE Alu 1 298 -14 858 168 0 0 chr3 4345914 4346039 -223178539 + AluJb SINE Alu 1 125 -187 438 211 0 0 chr3 4346853 4346962 -223177616 + G-rich Low_complexity Low_complexity 1 109 0 222 278 19 0 chr3 4347300 4347354 -223177224 + L2 LINE L2 3237 3291 -22 266 316 121 17 chr3 4347383 4347614 -223176964 + MIR SINE MIR 8 262 0 1810 108 0 4 chr3 4347646 4347886 -223176692 - AluSc SINE Alu -70 239 1 293 95 0 0 chr3 4347910 4347952 -223176626 - L1MCb LINE L1 -4195 2369 2328 696 202 77 34 chr3 4347955 4348294 -223176284 - L1MB3 LINE L1 -3 6460 2049 1684 231 30 36 chr3 4348304 4348806 -223175772 - L1MA9 LINE L1 -32 6280 5782 283 136 0 0 chr3 4348858 4348902 -223175676 + L1M4 LINE L1 5731 5774 -400 * 1077 172 0 0 chr3 4348901 4349087 -223175491 - L1MA9 LINE L1 -552 5782 5597 * 3173 214 82 24 chr3 4349084 4350193 -223174385 - L1MCb LINE L1 -4508 2237 851 281 87 0 22 chr3 4350195 4350241 -223174337 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1226 90 6 0 chr3 4350254 4350432 -223174146 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2232 115 0 0 chr3 4350946 4351234 -223173344 - AluSx SINE Alu -24 288 1 192 258 45 15 chr3 4352146 4352212 -223172366 - L2 LINE L2 -1 3312 3245 2685 164 7 20 chr3 4352695 4353134 -223171444 - Tigger2a DNA MER2_type 0 434 2 222 37 0 0 chr3 4353146 4353173 -223171405 + (TA)n Simple_repeat Simple_repeat 2 28 0 421 313 85 64 chr3 4353276 4353711 -223170867 + MLT1J1 LTR MaLR 3 446 0 244 361 189 19 chr3 4353907 4354273 -223170305 - L2 LINE L2 -344 2970 2543 1117 204 75 45 chr3 4354307 4354640 -223169938 + MER2 DNA MER2_type 1 343 -1 1812 139 41 24 chr3 4356614 4356908 -223167670 + THE1B LTR MaLR 1 299 -65 2274 106 7 0 chr3 4356908 4357200 -223167378 - AluSx SINE Alu -18 294 1 274 349 88 17 chr3 4358676 4358914 -223165664 + L2 LINE L2 1865 2119 -1195 588 245 86 7 chr3 4359121 4359272 -223165306 - MIR SINE MIR -71 191 29 3805 191 43 32 chr3 4359479 4360061 -223164517 + L1MB8 LINE L1 5309 5906 -272 2246 167 69 100 chr3 4360061 4360744 -223163834 - MER4A LTR ERV1 0 664 3 3805 191 43 32 chr3 4360744 4361016 -223163562 + L1MB8 LINE L1 5906 6173 -5 678 300 65 67 chr3 4361435 4361882 -223162696 - MLT1K LTR MaLR 0 588 143 260 324 0 0 chr3 4362098 4362172 -223162406 + MIR3 SINE MIR 112 185 -23 2289 112 0 0 chr3 4362328 4362631 -223161947 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 4362659 4362682 -223161896 + AT_rich Low_complexity Low_complexity 1 23 0 1002 146 189 5 chr3 4362845 4363030 -223161548 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 4363873 4363911 -223160667 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 370 301 153 14 chr3 4364908 4365124 -223159454 + MIR SINE MIR 13 258 -4 186 293 35 0 chr3 4365835 4365893 -223158685 - MIR3 SINE MIR -37 171 112 222 338 13 0 chr3 4366621 4366698 -223157880 + MIR SINE MIR 68 145 -63 944 147 7 0 chr3 4367754 4367897 -223156681 - AluJb SINE Alu -168 144 1 1721 170 10 10 chr3 4368831 4369131 -223155447 + AluJo SINE Alu 1 300 -12 1280 177 42 100 chr3 4369146 4369456 -223155122 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 4369528 4369608 -223154970 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 4369700 4370065 -223154513 + THE1B LTR MaLR 1 364 0 621 317 176 32 chr3 4370068 4370409 -223154169 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 4371515 4371653 -223152925 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 4371709 4371861 -223152717 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 4372164 4372255 -223152323 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 4372255 4372576 -223152002 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 4372576 4372718 -223151860 - Charlie8 DNA MER1_type -218 123 2 1121 265 70 26 chr3 4373214 4373779 -223150799 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 4373812 4373840 -223150738 + AT_rich Low_complexity Low_complexity 1 28 0 194 298 0 0 chr3 4373917 4373974 -223150604 + L2 LINE L2 3255 3311 -2 337 195 26 26 chr3 4373989 4374066 -223150512 + MLT1L LTR MaLR 3 79 -536 449 301 65 37 chr3 4374591 4374837 -223149741 + Charlie8 DNA MER1_type 5 257 -2160 468 0 0 0 chr3 4374851 4374903 -223149675 + (TG)n Simple_repeat Simple_repeat 2 53 0 209 296 59 89 chr3 4376084 4376219 -223148359 + MIR SINE MIR 17 147 -61 742 249 73 96 chr3 4376228 4376630 -223147948 - MLT1I LTR MaLR -7 402 1 201 237 0 0 chr3 4376675 4376734 -223147844 + (TA)n Simple_repeat Simple_repeat 2 60 0 294 290 30 53 chr3 4377462 4377593 -223146985 - L2 LINE L2 -4 3309 3182 329 232 40 24 chr3 4378125 4378250 -223146328 + L1ME LINE L1 5630 5756 -365 307 293 75 34 chr3 4378816 4378963 -223145615 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 4378977 4378995 -223145583 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 4378995 4379367 -223145211 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 4379367 4379733 -223144845 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 4379749 4379955 -223144623 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 4380471 4380499 -223144079 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 4380499 4380802 -223143776 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 4380824 4380908 -223143670 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 4381139 4381225 -223143353 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 4381225 4381913 -223142665 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 4381913 4382319 -223142259 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 4382440 4382680 -223141898 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 4383098 4383139 -223141439 + AT_rich Low_complexity Low_complexity 1 41 0 1815 174 7 0 chr3 4383139 4383438 -223141140 + AluJb SINE Alu 1 301 -11 1071 103 0 7 chr3 4384071 4384217 -223140361 + AluSg/x SINE Alu 135 279 -30 415 253 114 32 chr3 4384612 4384770 -223139808 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 4384936 4385137 -223139441 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 4385137 4385454 -223139124 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 4385454 4385810 -223138768 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 4386111 4386293 -223138285 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 4386378 4386689 -223137889 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 4386665 4386707 -223137871 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 4387536 4387757 -223136821 - MIR SINE MIR -5 257 18 2426 96 0 0 chr3 4387932 4388244 -223136334 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 4388765 4388965 -223135613 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 4389211 4389357 -223135221 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 4389358 4389445 -223135133 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 4389626 4389783 -223134795 - MIR SINE MIR 0 262 104 4812 152 20 9 chr3 4390837 4391641 -223132937 + L1MC1 LINE L1 5509 6321 -12 360 364 23 6 chr3 4392152 4392328 -223132250 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 4392420 4392967 -223131611 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 4393147 4393221 -223131357 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 4393466 4393572 -223131006 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 4393948 4394101 -223130477 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 4395008 4395063 -223129515 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 4395065 4395198 -223129380 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 4395254 4395331 -223129247 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 4395700 4395767 -223128811 - L2 LINE L2 -7 3265 3198 2214 124 3 0 chr3 4395934 4396241 -223128337 + AluSq SINE Alu 1 308 -5 1215 260 59 52 chr3 4396331 4396792 -223127786 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 4396814 4396878 -223127700 - MER41A LTR ERV1 -90 464 400 1108 287 89 2 chr3 4396878 4397272 -223127306 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 4397349 4397827 -223126751 - LTR50 LTR ERVL 0 795 124 1373 179 115 86 chr3 4397969 4398486 -223126092 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 4398504 4398691 -223125887 - MIR SINE MIR -21 241 47 1182 199 17 39 chr3 4399598 4399829 -223124749 - AluJo SINE Alu -86 226 1 819 207 92 6 chr3 4399829 4400003 -223124575 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 4401583 4401612 -223122966 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 4402090 4402205 -223122373 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 4402557 4402623 -223121955 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 4402873 4402936 -223121642 + (TG)n Simple_repeat Simple_repeat 2 64 0 348 297 10 10 chr3 4402936 4403037 -223121541 - LTR67 LTR ERVL -9 548 448 234 222 139 28 chr3 4403311 4403419 -223121159 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 4404101 4404546 -223120032 - MLT1D LTR MaLR 0 505 46 1679 184 62 42 chr3 4404548 4404729 -223119849 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 4404729 4405371 -223119207 + LTR9 LTR ERV1 1 612 0 1679 184 62 42 chr3 4405371 4405481 -223119097 - MLT2D LTR ERVL -179 235 129 2393 60 0 13 chr3 4405481 4405780 -223118798 + AluY SINE Alu 1 295 -16 1679 184 62 42 chr3 4405780 4405890 -223118688 - MLT2D LTR ERVL -285 129 1 237 143 24 24 chr3 4405898 4405940 -223118638 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 4405957 4406147 -223118431 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 4406400 4406482 -223118096 - L2 LINE L2 -2 3270 3192 2102 86 52 0 chr3 4407118 4407385 -223117193 - AluSc SINE Alu -28 281 1 4187 118 24 5 chr3 4408080 4408671 -223115907 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 4408742 4408914 -223115664 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 4409004 4409302 -223115276 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 4409302 4409827 -223114751 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 4409827 4410041 -223114537 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 4410309 4410438 -223114140 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 4411845 4412245 -223112333 - LTR47A LTR ERVL 0 452 1 4812 146 51 51 chr3 4412257 4413738 -223110840 - MER21-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 4413739 4413794 -223110784 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 4413798 4413827 -223110751 + (TG)n Simple_repeat Simple_repeat 2 30 0 2202 64 37 7 chr3 4413847 4414142 -223110436 - MLT2A1 LTR ERVL -140 304 1 1768 220 19 6 chr3 4414142 4414505 -223110073 - MER21-int LTR ERV1 -2026 2165 1798 243 0 0 0 chr3 4414621 4414648 -223109930 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 252 0 0 0 chr3 4414647 4414675 -223109903 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 4415996 4416017 -223108561 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 4416501 4416941 -223107637 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 4417034 4417098 -223107480 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 4417101 4417141 -223107437 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 4417141 4417241 -223107337 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 4417155 4417252 -223107326 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 4417291 4417755 -223106823 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 4419119 4419320 -223105258 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 4420638 4421079 -223103499 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 4421088 4421493 -223103085 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 4421493 4421704 -223102874 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 4422043 4422173 -223102405 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 4422344 4422402 -223102176 + MIR3 SINE MIR 8 62 -146 4843 171 30 36 chr3 4422512 4423898 -223100680 + L1MB3 LINE L1 4810 6181 -2 400 154 0 0 chr3 4425422 4425487 -223099091 - THE1B LTR MaLR 0 364 300 1103 146 5 22 chr3 4425491 4425676 -223098902 + AluSx SINE Alu 1 182 -130 6976 19 1 0 chr3 4425776 4426621 -223097957 + L1HS LINE L1 5310 6155 0 226 229 0 0 chr3 4426623 4426684 -223097894 + A-rich Low_complexity Low_complexity 1 61 0 1892 146 0 20 chr3 4427196 4427498 -223097080 + AluSx SINE Alu 1 296 -16 188 235 0 0 chr3 4427498 4427532 -223097046 - MIR3 SINE MIR -24 184 151 1997 115 81 32 chr3 4427592 4427939 -223096639 + THE1B LTR MaLR 1 364 0 4969 62 1 3 chr3 4427939 4428597 -223095981 + THE1B-int LTR MaLR 1 657 -923 1337 155 4 52 chr3 4428597 4428849 -223095729 + THE1B LTR MaLR 125 364 0 304 264 110 110 chr3 4428850 4429077 -223095501 - MIR SINE MIR -32 230 4 458 243 87 28 chr3 4429205 4429365 -223095213 - MIR3 SINE MIR -48 160 20 1281 211 0 76 chr3 4429566 4429774 -223094804 + AluJo SINE Alu 1 180 -132 1993 173 12 6 chr3 4429774 4430115 -223094463 + MER61A LTR ERV1 1 343 0 1281 211 0 76 chr3 4430115 4430209 -223094369 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 4430209 4430239 -223094339 + AT_rich Low_complexity Low_complexity 1 30 0 403 296 23 109 chr3 4430951 4431208 -223093370 - MIR SINE MIR -9 253 19 249 291 0 25 chr3 4431379 4431458 -223093120 - MIR3 SINE MIR 0 208 132 253 229 148 0 chr3 4431461 4431522 -223093056 - L2 LINE L2 -2 3270 3201 321 267 11 7 chr3 4432369 4432490 -223092088 - LTR43 LTR ERV1 -207 472 223 352 262 69 48 chr3 4432784 4432929 -223091649 + MLT1K LTR MaLR 274 421 -167 671 305 75 25 chr3 4433141 4433663 -223090915 + L1ME4a LINE L1 5350 5897 -224 1445 258 11 8 chr3 4433850 4434206 -223090372 + MLT1A2 LTR MaLR 4 360 -14 296 183 42 0 chr3 4434632 4434703 -223089875 + MER116 DNA Mariner 1 74 -6 2067 144 0 0 chr3 4436440 4436784 -223087794 - AluSx SINE Alu 0 344 1 1460 208 109 43 chr3 4437657 4438163 -223086415 - MER90 LTR ERV1 -6 608 70 2125 141 13 0 chr3 4438516 4438822 -223085756 - AluJo SINE Alu -2 310 1 212 292 79 22 chr3 4438953 4439042 -223085536 + MIR3 SINE MIR 90 183 -25 1643 249 190 30 chr3 4439562 4440389 -223084189 - HAL1 LINE L1 -209 2298 1340 383 306 89 0 chr3 4440393 4440674 -223083904 - HAL1 LINE L1 -1218 1289 984 432 288 113 19 chr3 4440860 4441072 -223083506 - HAL1 LINE L1 -1842 665 434 206 342 57 19 chr3 4441414 4441572 -223083006 + L2 LINE L2 2917 3080 -192 1877 154 3 13 chr3 4441589 4441900 -223082678 - AluJb SINE Alu -4 308 1 2232 78 35 0 chr3 4442672 4442955 -223081623 + AluY SINE Alu 1 293 -18 491 221 302 0 chr3 4442957 4443129 -223081449 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 4443173 4443229 -223081349 + (CA)n Simple_repeat Simple_repeat 1 56 0 427 315 34 0 chr3 4443276 4443422 -223081156 - MER117 DNA MER1_type -36 161 11 388 352 49 6 chr3 4443724 4443886 -223080692 - MIR SINE MIR -13 249 81 714 254 215 0 chr3 4444154 4444359 -223080219 - MIR SINE MIR -8 254 6 462 306 0 0 chr3 4445078 4445189 -223079389 + MER81 DNA DNA 4 114 0 233 274 140 18 chr3 4445361 4445467 -223079111 - L1MC/D LINE L1 -2273 5535 5401 1743 149 72 0 chr3 4445467 4445743 -223078835 + AluSx SINE Alu 1 296 -16 233 274 140 18 chr3 4445743 4445800 -223078778 - L1MC/D LINE L1 -2407 5401 5352 261 376 64 0 chr3 4446867 4446976 -223077602 - L2 LINE L2 0 3313 3198 2430 69 3 0 chr3 4447094 4447398 -223077180 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 4448067 4448191 -223076387 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 4448701 4448901 -223075677 + MIR SINE MIR 31 253 -9 477 40 40 0 chr3 4450115 4450191 -223074387 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 204 67 12 chr3 4450199 4450776 -223073802 - L1ME1 LINE L1 -7 6159 5517 975 255 87 19 chr3 4450782 4451150 -223073428 - MLT1D LTR MaLR 0 505 113 1182 151 58 92 chr3 4451162 4451496 -223073082 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 4451539 4451622 -223072956 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 4451633 4451803 -223072775 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 4451803 4452110 -223072468 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 4452110 4452518 -223072060 - L1ME1 LINE L1 -825 5341 4902 1936 164 0 3 chr3 4453744 4454043 -223070535 - AluJo SINE Alu -14 298 1 232 332 158 21 chr3 4455111 4455301 -223069277 + L3 LINE CR1 1009 1224 -353 181 152 61 0 chr3 4455358 4455391 -223069187 + MER5B DNA MER1_type 11 45 -133 722 209 120 0 chr3 4455566 4455724 -223068854 + MER45A DNA AcHobo 2 178 0 2276 94 3 0 chr3 4457303 4457601 -223066977 - AluSx SINE Alu -13 299 1 581 183 0 48 chr3 4458193 4458319 -223066259 - Tigger2 DNA MER2_type 0 2718 2599 569 240 0 0 chr3 4458316 4458437 -223066141 + MER45A DNA AcHobo 57 177 -1 * 1774 117 78 3 chr3 4458645 4458952 -223065626 - Tigger2 DNA MER2_type -116 2602 2273 266 254 30 0 chr3 4458942 4459009 -223065569 - Tigger2 DNA MER2_type -2649 69 1 * 348 325 42 6 chr3 4459268 4459434 -223065144 + MIR3 SINE MIR 30 201 -7 256 269 30 0 chr3 4459941 4460008 -223064570 + Tigger2 DNA MER2_type 1 69 -2649 * 336 139 241 13 chr3 4459998 4460077 -223064501 + Tigger2 DNA MER2_type 2273 2369 -349 336 286 30 75 chr3 4460653 4460786 -223063792 + L2 LINE L2 2943 3069 -203 400 353 0 0 chr3 4461100 4461222 -223063356 + MIR3 SINE MIR 72 193 -15 3912 122 29 8 chr3 4461641 4462262 -223062316 + MER41B LTR ERV1 2 635 0 632 288 101 5 chr3 4462264 4462483 -223062095 - MIR SINE MIR 0 262 23 3447 210 51 36 chr3 4463051 4464140 -223060438 + L1MC4a LINE L1 6700 7805 -3 641 190 29 36 chr3 4464158 4464295 -223060283 - AluJo SINE Alu -176 136 1 1745 166 3 19 chr3 4464410 4464723 -223059855 + AluJb SINE Alu 5 312 0 230 245 0 0 chr3 4464845 4464898 -223059680 - L2 LINE L2 -4 3309 3257 1915 106 19 0 chr3 4465808 4466064 -223058514 + AluSq SINE Alu 49 309 -4 1264 78 21 21 chr3 4466064 4466255 -223058323 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 4466726 4466749 -223057829 + AT_rich Low_complexity Low_complexity 1 23 0 583 99 148 10 chr3 4466754 4466855 -223057723 - FLAM_C SINE Alu -24 119 5 860 131 77 0 chr3 4466904 4467034 -223057544 + FRAM SINE Alu 20 159 -17 293 367 17 0 chr3 4467223 4467343 -223057235 - MIR SINE MIR -133 129 8 534 236 48 36 chr3 4467631 4467796 -223056782 + MER5B DNA MER1_type 11 177 -1 688 129 103 189 chr3 4468023 4468238 -223056340 - MER33 DNA MER1_type -2265 320 145 1734 167 20 7 chr3 4468238 4468532 -223056046 + AluJb SINE Alu 1 298 -14 688 129 103 189 chr3 4468532 4468666 -223055912 - MER33 DNA MER1_type -2440 145 1 3275 70 10 0 chr3 4468897 4469381 -223055197 + L1P LINE L1 4915 5403 -743 190 379 0 0 chr3 4469527 4469593 -223054985 - MIR SINE MIR -72 136 71 276 163 0 0 chr3 4469593 4469642 -223054936 + L1MC3 LINE L1 7045 7093 -692 258 262 24 12 chr3 4469646 4469730 -223054848 + MLT1F1 LTR MaLR 40 124 -443 1905 187 74 71 chr3 4469731 4470326 -223054252 + L1MC3 LINE L1 7189 7785 0 2223 112 0 13 chr3 4471113 4471416 -223053162 - AluSx SINE Alu -13 299 1 2087 121 0 0 chr3 4472417 4472722 -223051856 + AluSx SINE Alu 1 305 0 527 281 67 12 chr3 4473136 4473300 -223051278 - MER5B DNA MER1_type 0 178 6 275 87 0 43 chr3 4474012 4474058 -223050520 + L2 LINE L2 3195 3238 -75 2160 112 3 0 chr3 4474670 4474965 -223049613 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 4475153 4475310 -223049268 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 4475418 4475446 -223049132 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 4475494 4475789 -223048789 + AluSx SINE Alu 1 296 -16 2361 123 5 32 chr3 4479299 4479673 -223044905 - THE1B LTR MaLR 0 364 1 8116 128 30 8 chr3 4480004 4481316 -223043262 - Tigger1 DNA MER2_type 0 2418 1079 3581 135 107 6 chr3 4481305 4481941 -223042637 - Tigger1 DNA MER2_type -1656 762 63 * 341 211 273 19 chr3 4483793 4483954 -223040624 - L1MC4a LINE L1 -1859 5949 5748 243 346 0 0 chr3 4483993 4484071 -223040507 - L1MC4a LINE L1 -2144 5664 5587 1690 80 0 0 chr3 4484089 4484302 -223040276 + AluSg SINE Alu 1 213 -97 401 236 183 21 chr3 4484344 4484535 -223040043 - L1MC4a LINE L1 -2291 5517 5296 549 300 143 29 chr3 4484571 4485115 -223039463 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 4485386 4485412 -223039166 + AT_rich Low_complexity Low_complexity 1 26 0 363 232 36 94 chr3 4486473 4486581 -223037997 + L2 LINE L2 3182 3282 -31 2545 98 30 6 chr3 4486581 4486947 -223037631 - THE1C LTR MaLR 0 375 1 363 232 36 94 chr3 4486947 4486976 -223037602 + L2 LINE L2 3282 3311 -2 562 280 13 13 chr3 4486980 4487130 -223037448 + MIR SINE MIR 34 183 -79 1670 188 40 3 chr3 4487383 4487708 -223036870 + MER1B DNA MER1_type 1 337 0 244 295 105 11 chr3 4487799 4487894 -223036684 - L3 LINE CR1 -278 1299 1196 305 261 76 32 chr3 4488468 4488625 -223035953 - L1ME LINE L1 -283 5838 5675 269 254 211 7 chr3 4488642 4488784 -223035794 - L1ME LINE L1 -1445 4701 4531 1873 151 18 0 chr3 4489680 4489965 -223034613 + AluJb SINE Alu 9 298 -14 254 267 67 33 chr3 4490205 4490295 -223034283 + MIR SINE MIR 13 105 -157 1042 130 0 34 chr3 4493448 4493625 -223030953 + AluSg/x SINE Alu 124 294 -15 234 261 54 43 chr3 4598057 4598149 -222926429 + MIR SINE MIR 103 195 -67 1655 156 3 52 chr3 4599579 4599907 -222924671 - AluJb SINE Alu 0 312 1 187 200 0 60 chr3 4599925 4599975 -222924603 - MIR SINE MIR -106 156 110 1658 157 18 11 chr3 4600533 4600819 -222923759 + AluJo SINE Alu 1 288 -24 207 187 36 65 chr3 4602526 4602665 -222921913 + (CATAA)n Simple_repeat Simple_repeat 5 139 0 1132 297 88 26 chr3 4605131 4605331 -222919247 - L2 LINE L2 0 3313 3127 1727 128 75 11 chr3 4605331 4605618 -222918960 + AluSx SINE Alu 1 304 0 1132 297 88 26 chr3 4605618 4606179 -222918399 - L2 LINE L2 -186 3127 2502 277 307 45 11 chr3 4606196 4606284 -222918294 - MIR SINE MIR -119 143 53 785 189 5 121 chr3 4606293 4606499 -222918079 - MER5A DNA MER1_type -1 188 7 342 336 79 21 chr3 4606940 4607080 -222917498 - MIR3 SINE MIR -3 205 58 1622 189 40 15 chr3 4608010 4608411 -222916167 - Charlie1 DNA MER1_type -8 2753 2343 198 285 180 47 chr3 4608544 4608716 -222915862 + MIR SINE MIR 21 215 -47 1774 132 91 0 chr3 4609158 4609423 -222915155 - AluSx SINE Alu -21 291 3 2358 76 3 0 chr3 4609902 4610204 -222914374 + AluY SINE Alu 1 303 -8 206 215 0 46 chr3 4610849 4610914 -222913664 - L2 LINE L2 -1052 2262 2201 1873 133 95 24 chr3 4611669 4612006 -222912572 - MER46B DNA MER2_type 0 236 1 633 278 68 68 chr3 4614084 4614466 -222910112 - MLT1J1 LTR MaLR 0 446 65 2052 201 57 9 chr3 4615765 4616204 -222908374 - LOR1b LTR ERV1 0 461 2 443 327 67 73 chr3 4617583 4618048 -222906530 + L2 LINE L2 2808 3269 -3 1617 192 13 55 chr3 4619394 4619774 -222904804 - MLT1A1 LTR MaLR -1 364 1 2319 181 36 23 chr3 4620092 4620621 -222903957 + L1MA8 LINE L1 5752 6287 -4 27 0 0 0 chr3 4620622 4620649 -222903929 + AT_rich Low_complexity Low_complexity 1 27 0 2236 107 0 19 chr3 4620705 4621022 -222903556 + AluSq SINE Alu 1 311 -2 2142 125 7 0 chr3 4621440 4621735 -222902843 + AluSx SINE Alu 1 297 -15 779 268 57 13 chr3 4622541 4622769 -222901809 - LTR16A1 LTR ERVL -12 445 208 561 256 35 12 chr3 4623648 4623820 -222900758 + MER5B DNA MER1_type 3 178 0 879 225 16 0 chr3 4623866 4624048 -222900530 - MER5A DNA MER1_type -3 186 2 659 292 118 55 chr3 4624967 4625296 -222899282 + L1M3d LINE L1 413 762 -5541 4968 257 32 26 chr3 4625601 4627019 -222897559 + L1M3d LINE L1 777 2184 -4198 2169 126 0 7 chr3 4627019 4627329 -222897249 + AluSx SINE Alu 1 308 -4 4968 257 32 26 chr3 4627329 4629224 -222895354 + L1M3d LINE L1 2184 4170 -2212 2019 117 38 0 chr3 4629224 4629515 -222895063 - AluSx SINE Alu -10 302 1 4968 257 32 26 chr3 4629515 4629600 -222894978 + L1M3d LINE L1 4170 4253 -2129 876 131 11 60 chr3 4629598 4629781 -222894797 - L1 LINE L1 -1947 4199 4026 * 2436 186 58 9 chr3 4629797 4630336 -222894242 + L1MB2 LINE L1 5591 6155 -16 5096 66 21 27 chr3 4630344 4631504 -222893074 - SVA Other Other -955 1386 2 500 290 168 0 chr3 4631556 4631711 -222892867 - MER5A DNA MER1_type 0 189 9 822 174 28 90 chr3 4632652 4632864 -222891714 - MER63A DNA MER1_type -8 202 4 2214 114 3 29 chr3 4633210 4633526 -222891052 + AluSx SINE Alu 1 308 -4 300 328 61 15 chr3 4633553 4633684 -222890894 - L2 LINE L2 -1 3312 3176 645 231 20 138 chr3 4634382 4634729 -222889849 + L1MD1 LINE L1 5927 6232 -10 268 250 0 98 chr3 4634846 4634938 -222889640 - MIR SINE MIR -16 246 164 1663 188 11 7 chr3 4635198 4635485 -222889093 - AluJo SINE Alu -24 288 1 2257 103 7 0 chr3 4636757 4637059 -222887519 - AluSx SINE Alu -8 304 1 208 258 186 31 chr3 4638889 4638986 -222885592 - L2 LINE L2 -27 3286 3175 320 215 168 9 chr3 4639209 4639316 -222885262 + L1ME3 LINE L1 6031 6154 -8 2040 110 28 3 chr3 4639423 4639714 -222884864 + AluSc SINE Alu 2 299 -10 373 305 58 29 chr3 4640192 4640366 -222884212 - L3 LINE CR1 -190 1387 1209 968 229 129 25 chr3 4641357 4641720 -222882858 - MLT1I LTR MaLR -4 405 5 473 241 135 7 chr3 4642199 4642340 -222882238 - Charlie8 DNA MER1_type -2171 246 88 695 261 43 34 chr3 4643622 4643856 -222880722 - MLT1K LTR MaLR -11 577 342 518 277 40 0 chr3 4643901 4644049 -222880529 - MLT1K LTR MaLR -412 176 23 354 347 68 46 chr3 4645117 4645621 -222878957 - L2 LINE L2 -499 2815 2301 302 256 84 116 chr3 4645632 4645775 -222878803 + L2 LINE L2 3012 3147 -166 1587 195 30 10 chr3 4645775 4645946 -222878632 - AluJo SINE Alu -8 304 123 213 39 0 0 chr3 4645946 4645972 -222878606 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1587 195 30 10 chr3 4645972 4646098 -222878480 - AluJo SINE Alu -189 123 1 302 256 84 116 chr3 4646098 4646169 -222878409 + L2 LINE L2 3147 3219 -94 2521 59 0 3 chr3 4646246 4646552 -222878026 + AluY SINE Alu 1 305 -6 914 173 62 6 chr3 4646557 4646736 -222877842 - MLT1D LTR MaLR -60 445 257 458 237 46 94 chr3 4646742 4646951 -222877627 - MER4C LTR ERV1 -8 685 468 2318 61 0 0 chr3 4646951 4647272 -222877306 - AluY SINE Alu 0 321 1 458 237 46 94 chr3 4647272 4647576 -222877002 - MER4C LTR ERV1 -225 468 125 513 126 54 18 chr3 4647634 4647745 -222876833 - MER4C LTR ERV1 -349 116 2 199 260 19 115 chr3 4649545 4649649 -222874929 + L2 LINE L2 2565 2658 -656 343 344 38 13 chr3 4650455 4650612 -222873966 + MER5A DNA MER1_type 24 184 -5 369 362 22 26 chr3 4650616 4650845 -222873733 + L2 LINE L2 2745 2972 -342 1434 208 20 35 chr3 4650848 4651194 -222873384 + MER58B DNA MER1_type 1 341 0 436 295 18 48 chr3 4652517 4652683 -222871895 - MIR SINE MIR -66 196 36 528 249 76 15 chr3 4653962 4654159 -222870419 - MER63A DNA MER1_type 0 210 2 634 314 206 31 chr3 4655321 4655907 -222868671 + L2 LINE L2 2037 2725 -589 368 277 69 31 chr3 4656188 4656318 -222868260 + L2 LINE L2 3137 3271 -1 276 194 250 8 chr3 4656869 4656993 -222867585 + MER103 DNA DNA 2 155 -11 279 71 0 0 chr3 4657740 4657782 -222866796 + (TA)n Simple_repeat Simple_repeat 2 43 0 1848 110 0 0 chr3 4657782 4658027 -222866551 - AluSc SINE Alu -19 290 46 684 333 40 17 chr3 4658896 4659247 -222865331 - LTR16A LTR ERVL -6 444 86 187 130 22 22 chr3 4659746 4659792 -222864786 + GA-rich Low_complexity Low_complexity 4 49 0 537 308 49 57 chr3 4660743 4660844 -222863734 + Charlie8 DNA MER1_type 71 171 -2246 1875 170 3 10 chr3 4660844 4661156 -222863422 - AluJo SINE Alu -2 310 1 537 308 49 57 chr3 4661156 4661440 -222863138 + Charlie8 DNA MER1_type 171 453 -1964 599 185 110 153 chr3 4662680 4663026 -222861552 + MER46C DNA MER2_type 2 332 -6 658 313 70 10 chr3 4663105 4663436 -222861142 + L2 LINE L2 2740 3095 -218 437 319 14 28 chr3 4664987 4665131 -222859447 + L2 LINE L2 3168 3309 -4 * 519 237 101 0 chr3 4665129 4665268 -222859310 + MIR SINE MIR 72 224 -38 2023 130 14 43 chr3 4665343 4665690 -222858888 - MER1B DNA MER1_type 0 337 1 180 194 194 0 chr3 4666499 4666535 -222858043 + MIR SINE MIR 64 106 -102 338 367 80 15 chr3 4667044 4667243 -222857335 - MIR SINE MIR -19 243 32 811 325 83 32 chr3 4667374 4667901 -222856677 + L2 LINE L2 1823 2376 -938 212 193 70 35 chr3 4668012 4668069 -222856509 - L2 LINE L2 0 3313 3255 595 339 68 24 chr3 4669555 4669924 -222854654 - MLT1K LTR MaLR -180 408 24 3319 172 30 6 chr3 4669966 4670623 -222853955 + L1MB3 LINE L1 5509 6181 -2 3959 153 27 6 chr3 4670768 4671586 -222852992 - L1MA9 LINE L1 -22 6290 5356 3195 167 13 0 chr3 4671586 4672138 -222852440 - L1PA16 LINE L1 -1 6165 5607 27 0 0 0 chr3 4673704 4673731 -222850847 + AT_rich Low_complexity Low_complexity 1 27 0 2661 33 0 0 chr3 4675099 4675400 -222849178 + AluY SINE Alu 2 302 -9 307 202 46 46 chr3 4675453 4675562 -222849016 + MLT1H LTR MaLR 441 549 0 255 284 20 20 chr3 4676551 4676653 -222847925 - LTR67 LTR ERVL -7 550 449 642 309 57 0 chr3 4677083 4677277 -222847301 - L3 LINE CR1 -459 1118 914 1006 277 80 58 chr3 4677573 4678071 -222846507 + L2 LINE L2 2805 3313 0 508 254 56 0 chr3 4678096 4678222 -222846356 + L2 LINE L2 3178 3310 -3 418 290 168 0 chr3 4678636 4678791 -222845787 - MER5A DNA MER1_type 0 189 9 187 367 17 0 chr3 4678921 4678981 -222845597 - MIR SINE MIR -70 138 78 213 296 159 0 chr3 4679056 4679144 -222845434 - L2 LINE L2 0 3313 3212 842 203 35 5 chr3 4679499 4679696 -222844882 + MER3 DNA MER1_type 3 205 -4 228 350 133 21 chr3 4679700 4679934 -222844644 + L2 LINE L2 2605 2864 -450 2099 177 37 0 chr3 4680522 4680924 -222843654 + L1MA3 LINE L1 5887 6303 -2 4073 113 5 70 chr3 4681090 4681828 -222842750 - LTR8 LTR ERV1 0 691 2 228 67 0 0 chr3 4682770 4682800 -222841778 + (CCA)n Simple_repeat Simple_repeat 1 30 0 444 174 0 83 chr3 4683039 4683104 -222841474 - MLT1K LTR MaLR 0 588 536 527 185 0 22 chr3 4683104 4683239 -222841339 - L1MB8 LINE L1 -1 6177 6046 444 174 0 83 chr3 4683239 4683294 -222841284 - MLT1K LTR MaLR -52 536 478 966 280 56 41 chr3 4683321 4683664 -222840914 - MLT1K LTR MaLR -187 401 50 216 0 0 0 chr3 4683664 4683688 -222840890 + (TTA)n Simple_repeat Simple_repeat 2 25 0 966 280 56 41 chr3 4683688 4683737 -222840841 - MLT1K LTR MaLR -538 50 3 212 313 0 38 chr3 4683770 4683850 -222840728 + L2 LINE L2 3189 3265 -7 304 148 49 37 chr3 4684080 4684111 -222840467 - L1MC4 LINE L1 -1345 6697 6668 1695 113 118 136 chr3 4684111 4684218 -222840360 - Tigger2a DNA MER2_type -2274 434 327 233 29 0 29 chr3 4684218 4684253 -222840325 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1596 183 7 18 chr3 4684259 4684538 -222840040 - AluJo SINE Alu -30 282 7 1695 113 118 136 chr3 4684538 4684597 -222839981 - Tigger2a DNA MER2_type -2386 322 263 1779 159 10 17 chr3 4684597 4684893 -222839685 - AluJb SINE Alu -18 294 1 1695 113 118 136 chr3 4684893 4684935 -222839643 - Tigger2a DNA MER2_type -2445 263 222 2175 117 3 0 chr3 4684935 4685234 -222839344 - AluSx SINE Alu -12 300 1 1695 113 118 136 chr3 4685234 4685458 -222839120 - Tigger2a DNA MER2_type -2486 222 1 304 148 49 37 chr3 4685458 4685507 -222839071 - L1MC4 LINE L1 -1374 6668 6616 243 175 0 0 chr3 4686448 4686505 -222838073 + (CA)n Simple_repeat Simple_repeat 1 57 0 777 266 92 17 chr3 4688074 4688431 -222836147 - MER113 DNA MER1_type? -2 519 136 454 273 66 50 chr3 4688538 4688736 -222835842 - MIR SINE MIR -21 241 41 534 325 73 17 chr3 4689463 4689697 -222834881 + MIR SINE MIR 2 248 -14 1513 205 58 54 chr3 4691882 4692345 -222832233 + MLT1C LTR MaLR 2 466 -1 481 315 35 0 chr3 4692509 4692741 -222831837 - MER102a DNA MER1_type 0 330 91 2619 153 109 27 chr3 4693023 4693584 -222830994 - LTR36 LTR ERV1 -4 607 1 336 333 8 0 chr3 4693611 4693734 -222830844 + Tigger8 DNA MER2_type 530 653 -13 3168 134 23 72 chr3 4694737 4695315 -222829263 - LTR9 LTR ERV1 0 612 67 2516 43 0 0 chr3 4695315 4695616 -222828962 + AluY SINE Alu 1 301 -10 3168 134 23 72 chr3 4695616 4695680 -222828898 - LTR9 LTR ERV1 -545 67 1 1792 152 28 3 chr3 4695915 4696204 -222828374 + AluSx SINE Alu 1 296 -16 694 291 135 35 chr3 4696545 4696892 -222827686 - MLT1K LTR MaLR -73 515 134 2619 45 3 0 chr3 4697087 4697395 -222827183 + AluY SINE Alu 2 310 -1 906 241 97 28 chr3 4697706 4697922 -222826656 - MIR SINE MIR -30 232 2 23 68 0 0 chr3 4698188 4698232 -222826346 + AT_rich Low_complexity Low_complexity 1 44 0 827 194 104 15 chr3 4698477 4698678 -222825900 + MER20 DNA MER1_type 1 219 0 233 351 26 0 chr3 4698692 4698769 -222825809 - MIR SINE MIR -156 106 28 2093 146 0 0 chr3 4700052 4700354 -222824224 - AluJb SINE Alu -10 302 1 340 398 29 5 chr3 4700390 4700596 -222823982 - MIR SINE MIR -24 238 28 786 313 75 30 chr3 4700937 4701613 -222822965 - L2 LINE L2 -7 3306 2601 254 240 280 27 chr3 4703343 4703493 -222821085 - MIR3 SINE MIR -11 197 10 515 271 202 10 chr3 4704097 4704300 -222820278 + MIR SINE MIR 11 252 -10 193 284 60 0 chr3 4704325 4704392 -222820186 + MIR SINE MIR 166 236 -26 21 0 0 0 chr3 4705014 4705035 -222819543 + AT_rich Low_complexity Low_complexity 1 21 0 331 224 112 43 chr3 4705068 4705229 -222819349 - MER113 DNA MER1_type? -346 175 4 335 308 23 39 chr3 4707030 4707160 -222817418 + MER5A DNA MER1_type 57 184 -5 1113 208 47 7 chr3 4707170 4707439 -222817139 + MER58 DNA MER1_type 1 281 -56 2260 95 0 7 chr3 4707439 4707735 -222816843 - AluSq SINE Alu -15 298 5 407 158 37 0 chr3 4707750 4707832 -222816746 + MER58 DNA MER1_type 2320 2404 -16 21 36 0 0 chr3 4708484 4708512 -222816066 + AT_rich Low_complexity Low_complexity 1 28 0 261 83 0 0 chr3 4708734 4708770 -222815808 + (TA)n Simple_repeat Simple_repeat 2 37 0 291 324 94 25 chr3 4709787 4710099 -222814479 + L1MC/D LINE L1 5395 5729 -392 202 232 24 24 chr3 4710117 4710199 -222814379 + (TATAA)n Simple_repeat Simple_repeat 2 83 0 575 310 6 18 chr3 4712463 4712634 -222811944 + MER5A DNA MER1_type 16 184 -5 247 364 19 31 chr3 4712710 4712872 -222811706 - L2 LINE L2 -216 3056 2897 760 298 188 51 chr3 4713450 4713546 -222811032 + L3 LINE CR1 461 543 -1034 1129 158 50 180 chr3 4713546 4713963 -222810615 - MLT1A1 LTR MaLR 0 365 3 760 298 188 51 chr3 4713963 4714687 -222809891 + L3 LINE CR1 543 1393 -184 192 354 21 42 chr3 4714720 4714816 -222809762 + L3 LINE CR1 1464 1557 -20 198 103 0 0 chr3 4715006 4715035 -222809543 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 209 171 0 0 chr3 4716563 4716598 -222807980 + GA-rich Low_complexity Low_complexity 2 36 0 274 277 36 24 chr3 4716763 4716846 -222807732 + MIR3 SINE MIR 122 205 -3 2423 136 4 87 chr3 4717416 4717890 -222806688 + L1MB7 LINE L1 5680 6107 -77 1975 142 0 32 chr3 4717890 4718199 -222806379 - AluJb SINE Alu -13 299 1 2423 136 4 87 chr3 4718199 4718254 -222806324 + L1MB7 LINE L1 6107 6165 -19 284 266 273 7 chr3 4718662 4718816 -222805762 + MIR SINE MIR 3 197 -65 314 179 0 0 chr3 4719111 4719167 -222805411 - MLT-int LTR MaLR -993 742 687 1576 190 11 39 chr3 4719287 4719676 -222804902 - MLT1A1-int LTR MaLR -664 707 316 1366 174 10 49 chr3 4719686 4719991 -222804587 - MLT1A1 LTR MaLR -60 305 13 2203 62 42 10 chr3 4720027 4720315 -222804263 - AluY SINE Alu -14 297 1 253 298 164 35 chr3 4720328 4720499 -222804079 + L2 LINE L2 3120 3312 -1 198 301 68 45 chr3 4720826 4720959 -222803619 + MIR SINE MIR 9 144 -118 449 88 25 38 chr3 4722890 4722970 -222801608 + MADE1 DNA Mariner 2 80 0 272 227 57 11 chr3 4723414 4723502 -222801076 - HAL1 LINE L1 -1415 1092 1001 2544 34 0 0 chr3 4723577 4723872 -222800706 - AluY SINE Alu -16 295 1 1225 280 154 29 chr3 4723876 4724611 -222799967 - HAL1 LINE L1 -1596 911 85 306 153 0 0 chr3 4726017 4726076 -222798502 + (ATG)n Simple_repeat Simple_repeat 2 60 0 341 336 36 9 chr3 4726151 4726261 -222798317 - MIR SINE MIR -137 125 13 294 250 0 0 chr3 4726423 4726491 -222798087 - L2 LINE L2 -499 2815 2748 221 260 0 0 chr3 4726513 4726563 -222798015 - MIR SINE MIR 0 262 213 1572 127 0 5 chr3 4726583 4726804 -222797774 - AluSg/x SINE Alu -6 306 87 2230 118 3 0 chr3 4726826 4727130 -222797448 + AluSq SINE Alu 1 305 -8 330 345 25 49 chr3 4727269 4727472 -222797106 - MIR SINE MIR -44 218 21 360 0 0 0 chr3 4728187 4728227 -222796351 + (CA)n Simple_repeat Simple_repeat 2 41 0 289 206 29 49 chr3 4731900 4732002 -222792576 + L1MEd LINE L1 666 765 -5354 2703 231 46 34 chr3 4732790 4733433 -222791145 + L1MC4 LINE L1 6638 7292 -750 1814 153 43 10 chr3 4733433 4733734 -222790844 - AluSx SINE Alu -1 311 1 2703 231 46 34 chr3 4733734 4733804 -222790774 + L1MC4 LINE L1 7292 7360 -682 252 200 0 0 chr3 4733812 4733872 -222790706 + (TG)n Simple_repeat Simple_repeat 1 60 0 239 109 0 0 chr3 4733891 4733937 -222790641 + LTR66 LTR ERVL 394 439 -171 * 246 111 0 0 chr3 4733931 4733976 -222790602 - LTR66 LTR ERVL -171 439 395 465 220 60 22 chr3 4733981 4734125 -222790453 + L1MC4 LINE L1 7880 7994 -1 1554 292 179 16 chr3 4734707 4735513 -222789065 - L3 LINE CR1 -89 1488 552 1379 186 50 47 chr3 4735937 4736081 -222788497 + AluJo SINE Alu 1 143 -169 1562 186 0 62 chr3 4736081 4736404 -222788174 + AluSx SINE Alu 1 303 -9 1379 186 50 47 chr3 4736404 4736560 -222788018 + AluJo SINE Alu 143 302 -10 423 168 140 19 chr3 4738071 4738178 -222786400 + MIR SINE MIR 103 222 -40 207 0 0 0 chr3 4738524 4738547 -222786031 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 4739084 4739147 -222785431 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 4739460 4739490 -222785088 + AT_rich Low_complexity Low_complexity 1 30 0 335 217 105 28 chr3 4739684 4739827 -222784751 + L1ME4a LINE L1 5967 6120 -1 225 327 71 9 chr3 4740618 4740752 -222783826 - MIR SINE MIR -70 138 37 825 211 35 30 chr3 4741334 4741533 -222783045 - MER105 DNA DNA -4 200 1 216 285 89 32 chr3 4742890 4742945 -222781633 - MIR SINE MIR -1 261 211 1420 186 0 36 chr3 4742945 4743193 -222781385 - MER8 DNA MER2_type 0 239 1 216 285 89 32 chr3 4743193 4743260 -222781318 - MIR SINE MIR -51 211 132 199 331 67 18 chr3 4743483 4743647 -222780931 - MIR SINE MIR -67 141 23 963 233 69 25 chr3 4743790 4744035 -222780543 + MIR SINE MIR 7 262 0 282 311 49 8 chr3 4748339 4748461 -222776117 + L2 LINE L2 3187 3313 0 418 353 39 7 chr3 4748509 4748662 -222775916 + L2 LINE L2 3115 3272 0 1968 144 7 0 chr3 4749167 4749466 -222775112 + AluJb SINE Alu 1 301 -11 24 32 0 0 chr3 4749506 4749537 -222775041 + AT_rich Low_complexity Low_complexity 1 31 0 1821 147 14 7 chr3 4749710 4749996 -222774582 - AluJo SINE Alu -24 288 1 180 200 0 60 chr3 4750554 4750604 -222773974 + MIR SINE MIR 110 156 -106 1824 150 0 43 chr3 4750622 4750948 -222773630 + AluJb SINE Alu 1 312 0 227 261 54 43 chr3 4752380 4752472 -222772106 - MIR SINE MIR -67 195 103 2240 91 3 3 chr3 4754797 4755084 -222769494 + AluSp SINE Alu 12 298 -15 293 347 41 0 chr3 4755591 4755712 -222768866 + MIR3 SINE MIR 31 156 -52 270 185 174 0 chr3 4755715 4755807 -222768771 + MER113 DNA MER1_type? 4 111 -410 1775 152 20 10 chr3 4755821 4756117 -222768461 + AluJo SINE Alu 1 299 -13 609 229 100 26 chr3 4758418 4758756 -222765822 - MLT1G LTR MaLR -2 593 153 25767 64 4 9 chr3 4758775 4762096 -222762482 + L1P LINE L1 11 3315 -2831 1225 222 108 7 chr3 4762326 4762623 -222761955 - MER2 DNA MER2_type -13 332 6 213 39 0 0 chr3 4762633 4762659 -222761919 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 375 60 0 0 chr3 4762658 4762708 -222761870 + (TG)n Simple_repeat Simple_repeat 1 50 0 278 149 21 0 chr3 4763104 4763151 -222761427 - Charlie8 DNA MER1_type -6 2411 2364 606 252 63 15 chr3 4763188 4763223 -222761355 - MIR SINE MIR -34 228 196 2223 120 0 0 chr3 4763223 4763524 -222761054 - AluSx SINE Alu -11 301 1 606 252 63 15 chr3 4763524 4763694 -222760884 - MIR SINE MIR -66 196 13 298 280 156 53 chr3 4763715 4763940 -222760638 - L2 LINE L2 -150 3163 2916 277 126 24 0 chr3 4764105 4764166 -222760412 - MSTC LTR MaLR -26 431 308 * 540 208 53 52 chr3 4764165 4764341 -222760237 - MSTC LTR MaLR -185 180 1 620 248 62 6 chr3 4764342 4764503 -222760075 - Charlie8 DNA MER1_type -2237 180 11 181 286 71 51 chr3 4764537 4764623 -222759955 - MIR SINE MIR -136 126 36 2360 99 3 0 chr3 4764623 4764925 -222759653 + AluSq SINE Alu 1 303 -10 181 286 71 51 chr3 4764925 4764936 -222759642 - MIR SINE MIR -226 36 27 * 613 255 28 0 chr3 4764927 4765072 -222759506 + MIR SINE MIR 27 175 -87 1687 112 31 5 chr3 4765090 4765314 -222759264 - MER30 DNA MER1_type 0 230 1 1135 178 28 0 chr3 4766053 4766233 -222758345 + MER5A DNA MER1_type 3 187 -2 702 191 112 27 chr3 4766357 4766545 -222758033 - MER20 DNA MER1_type 0 219 16 245 246 33 0 chr3 4766582 4766643 -222757935 + MER5B DNA MER1_type 116 178 0 2038 140 7 0 chr3 4767176 4767476 -222757102 - AluSx SINE Alu -10 302 1 303 250 70 20 chr3 4767485 4767585 -222756993 - MIR SINE MIR -77 185 81 879 225 69 23 chr3 4768749 4769011 -222755567 + L1MB4 LINE L1 5907 6180 0 362 280 32 0 chr3 4769021 4769146 -222755432 - L2 LINE L2 -991 2323 2195 571 275 6 25 chr3 4769734 4769894 -222754684 + MIR SINE MIR 34 190 -72 2096 90 54 0 chr3 4772448 4772726 -222751852 - AluSq SINE Alu -20 293 1 499 222 104 22 chr3 4773093 4773228 -222751350 + L2 LINE L2 3122 3267 -5 197 363 12 25 chr3 4774757 4774837 -222749741 + MIR SINE MIR 2 80 -182 2255 128 0 0 chr3 4775976 4776281 -222748297 + AluSg SINE Alu 1 305 -5 202 358 0 0 chr3 4776550 4776617 -222747961 - L2 LINE L2 -1 3271 3205 311 327 58 13 chr3 4776754 4776910 -222747668 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 4776948 4776981 -222747597 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 552 188 240 19 chr3 4777159 4777313 -222747265 - MER53 DNA DNA 0 189 2 2330 98 7 0 chr3 4777573 4777880 -222746698 - AluSp SINE Alu -4 309 1 325 246 144 8 chr3 4778150 4778268 -222746310 - L2 LINE L2 -10 3303 3170 848 223 36 16 chr3 4778519 4778712 -222745866 + MER58A DNA MER1_type 19 215 -9 1747 128 7 40 chr3 4778712 4779009 -222745569 + AluJb SINE Alu 13 299 -13 180 406 82 30 chr3 4779563 4779635 -222744943 - L2 LINE L2 -79 3193 3126 2138 101 0 3 chr3 4779635 4779931 -222744647 + AluSc SINE Alu 1 295 -14 180 406 82 30 chr3 4779931 4780225 -222744353 - L2 LINE L2 -146 3126 2808 212 302 52 10 chr3 4780310 4780406 -222744172 - L2 LINE L2 -652 2662 2563 412 292 93 83 chr3 4781533 4781834 -222742744 - L2 LINE L2 -9 3263 2960 821 209 12 6 chr3 4782234 4782397 -222742181 + MER5A DNA MER1_type 1 164 -25 1632 169 6 49 chr3 4782433 4782758 -222741820 + AluJo SINE Alu 1 311 -1 185 260 20 0 chr3 4782953 4783003 -222741575 + MIR SINE MIR 104 154 -108 270 0 0 0 chr3 4783774 4783804 -222740774 + (TC)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 4784536 4784558 -222740020 + AT_rich Low_complexity Low_complexity 1 22 0 2392 88 0 7 chr3 4784719 4785025 -222739553 - AluSg SINE Alu -6 304 1 262 267 150 0 chr3 4785087 4785207 -222739371 - L1ME LINE L1 -279 5842 5705 226 386 30 0 chr3 4785272 4785373 -222739205 - L2 LINE L2 0 3272 3169 718 158 79 0 chr3 4785487 4785601 -222738977 + FLAM_C SINE Alu 2 124 -19 270 0 0 0 chr3 4785697 4785727 -222738851 + (TG)n Simple_repeat Simple_repeat 2 31 0 1683 195 7 0 chr3 4785728 4786020 -222738558 - AluJb SINE Alu -18 294 1 2149 98 28 0 chr3 4786768 4787054 -222737524 + AluSx SINE Alu 1 294 -18 1298 181 42 0 chr3 4787482 4787697 -222736881 + MER58A DNA MER1_type 1 224 0 1984 221 47 10 chr3 4787715 4788222 -222736356 + L1M4 LINE L1 4413 4938 -1208 309 350 57 13 chr3 4788380 4788537 -222736041 - MIR3 SINE MIR 0 208 45 876 169 0 0 chr3 4788620 4788750 -222735828 + FLAM_A SINE Alu 3 132 -1 2208 114 23 0 chr3 4789334 4789633 -222734945 - AluJb SINE Alu -6 306 1 2069 130 0 3 chr3 4789735 4790028 -222734550 - AluSg SINE Alu -16 294 3 395 283 145 0 chr3 4790842 4790980 -222733598 + MIR SINE MIR 40 197 -65 930 37 0 0 chr3 4791434 4791542 -222733036 - L1PA4 LINE L1 -2 6153 6046 1883 143 4 4 chr3 4791616 4791896 -222732682 + AluSx SINE Alu 1 280 -32 358 306 73 8 chr3 4792072 4792196 -222732382 - L2 LINE L2 0 3272 3141 2331 103 0 3 chr3 4792682 4792984 -222731594 + AluSx SINE Alu 1 301 -11 340 315 109 25 chr3 4793331 4793569 -222731009 + L2 LINE L2 2232 2489 -825 280 226 252 9 chr3 4793670 4793785 -222730793 + MIR3 SINE MIR 40 182 -26 1978 140 13 0 chr3 4793884 4794191 -222730387 + AluSx SINE Alu 1 311 -1 642 250 152 10 chr3 4794312 4794516 -222730062 - MIR SINE MIR -14 248 16 1814 185 0 3 chr3 4794828 4795126 -222729452 - AluJo SINE Alu -15 297 1 283 237 140 18 chr3 4796793 4796907 -222727671 + MIR3 SINE MIR 1 128 -80 201 211 0 0 chr3 4797544 4797596 -222726982 + (TG)n Simple_repeat Simple_repeat 1 52 0 1873 131 16 26 chr3 4797897 4798203 -222726375 + AluSx SINE Alu 1 303 -9 557 212 247 6 chr3 4798203 4798373 -222726205 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 4798823 4798949 -222725629 + MIR SINE MIR 20 146 -116 812 84 0 19 chr3 4800703 4800810 -222723768 + FLAM_A SINE Alu 22 126 -16 3562 119 12 2 chr3 4800850 4801356 -222723222 + L1PB3 LINE L1 5644 6154 0 205 283 47 47 chr3 4801692 4801798 -222722780 + MIR SINE MIR 69 174 -88 232 222 123 0 chr3 4802397 4802478 -222722100 - MIR3 SINE MIR -16 192 102 194 300 14 29 chr3 4802668 4802738 -222721840 - MIR SINE MIR -120 88 20 285 217 0 17 chr3 4803363 4803423 -222721155 + MER91 DNA MER1_type 2 60 -80 1881 72 103 4 chr3 4803777 4804039 -222720539 - AluSc SINE Alu -17 292 5 212 315 23 62 chr3 4804110 4804239 -222720339 + MIR SINE MIR 2 133 -75 22 0 0 0 chr3 4804274 4804296 -222720282 + AT_rich Low_complexity Low_complexity 1 22 0 2531 57 0 22 chr3 4804685 4805003 -222719575 - AluY SINE Alu 0 311 1 314 245 96 11 chr3 4805285 4805379 -222719199 - MER69A DNA AcHobo 0 177 76 1798 191 68 28 chr3 4805379 4805580 -222718998 + L1MD2 LINE L1 5944 6135 -224 2225 113 3 0 chr3 4805580 4805890 -222718688 + AluSx SINE Alu 1 311 -1 1798 191 68 28 chr3 4805890 4806087 -222718491 + L1MD2 LINE L1 6135 6358 -1 248 307 44 18 chr3 4806092 4806206 -222718372 - MER69A DNA AcHobo -60 117 1 225 352 38 52 chr3 4807031 4807241 -222717337 + L2 LINE L2 2564 2770 -544 549 271 84 67 chr3 4807433 4807732 -222716846 + MER5C DNA MER1_type 21 324 0 530 241 195 0 chr3 4808008 4808182 -222716396 + MIR SINE MIR 49 256 -6 3547 152 48 2 chr3 4808237 4808843 -222715735 - L1MB3 LINE L1 0 6183 5550 2130 116 3 16 chr3 4808844 4809154 -222715424 - AluSx SINE Alu -3 309 4 242 253 24 60 chr3 4809940 4810023 -222714555 + MIR SINE MIR 48 127 -81 2442 77 0 3 chr3 4810127 4810437 -222714141 + AluY SINE Alu 1 309 -2 206 310 113 0 chr3 4810563 4810634 -222713944 - MIR SINE MIR -155 107 29 760 222 102 9 chr3 4810983 4811199 -222713379 - MIR SINE MIR -13 249 14 999 190 20 20 chr3 4811639 4811839 -222712739 + MER20 DNA MER1_type 1 200 -19 210 333 0 43 chr3 4811898 4811967 -222712611 + L3 LINE CR1 1508 1573 -4 2003 140 10 0 chr3 4812542 4812835 -222711743 - AluSx SINE Alu -16 296 1 339 314 58 19 chr3 4813031 4813187 -222711391 + MIR3 SINE MIR 39 200 -8 939 117 7 15 chr3 4813345 4813482 -222711096 + AluJb SINE Alu 1 136 -176 1915 163 0 0 chr3 4813482 4813770 -222710808 + AluJb SINE Alu 6 293 -19 261 0 0 0 chr3 4813789 4813818 -222710760 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 100 7 0 chr3 4813820 4814100 -222710478 - AluSx SINE Alu -30 282 1 257 109 455 0 chr3 4814551 4814606 -222709972 - MADE1 DNA Mariner 0 80 1 1848 146 35 0 chr3 4814995 4815111 -222709467 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 4815111 4815157 -222709421 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1848 146 35 0 chr3 4815157 4815328 -222709250 + AluSx SINE Alu 112 298 -14 424 246 53 18 chr3 4816352 4816466 -222708112 - MIR3 SINE MIR -77 131 14 1263 124 0 43 chr3 4817129 4817315 -222707263 - AluSx SINE Alu -134 178 1 685 224 39 86 chr3 4817446 4817701 -222706877 - MER112 DNA MER1_type -12 248 6 299 269 86 30 chr3 4817788 4818022 -222706556 - L1ME4a LINE L1 -2 6119 5873 1029 186 9 24 chr3 4818116 4818184 -222706394 - MER3 DNA MER1_type -1 208 141 1936 143 7 7 chr3 4818184 4818471 -222706107 - AluSx SINE Alu -25 287 1 1029 186 9 24 chr3 4818471 4818612 -222705966 - MER3 DNA MER1_type -68 141 2 227 393 57 0 chr3 4820202 4820324 -222704254 - MIR SINE MIR -113 149 21 261 0 0 0 chr3 4821521 4821550 -222703028 + (CAA)n Simple_repeat Simple_repeat 2 30 0 276 284 0 68 chr3 4822736 4822824 -222701754 + L2 LINE L2 3168 3249 -23 2256 97 0 3 chr3 4825619 4825908 -222698670 - AluSx SINE Alu -24 288 1 193 192 154 19 chr3 4825928 4825980 -222698598 - L2 LINE L2 -3 3310 3252 185 0 0 39 chr3 4826067 4826093 -222698485 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2196 108 0 7 chr3 4826197 4826494 -222698084 - AluSq SINE Alu -18 295 1 376 249 115 91 chr3 4826741 4826935 -222697643 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 4826935 4827216 -222697362 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 4827216 4827274 -222697304 + L1ME4a LINE L1 5834 5889 -232 273 180 16 141 chr3 4827362 4827490 -222697088 - MLT1H LTR MaLR 0 549 438 2054 181 57 53 chr3 4827911 4828180 -222696398 + L1MB8 LINE L1 4789 5055 -1091 2267 110 0 10 chr3 4828180 4828489 -222696089 - AluSx SINE Alu -1 311 6 2054 181 57 53 chr3 4828489 4828614 -222695964 + L1MB8 LINE L1 5055 5178 -968 2055 121 4 4 chr3 4828614 4828916 -222695662 + AluSx SINE Alu 1 302 0 2054 181 57 53 chr3 4828916 4829044 -222695534 + L1MB8 LINE L1 5178 5316 -830 833 199 6 0 chr3 4829046 4829202 -222695376 + FRAM SINE Alu 1 40 0 4484 182 19 25 chr3 4829205 4830085 -222694493 + L1MB8 LINE L1 5304 6178 0 2004 137 0 22 chr3 4830366 4830681 -222693897 - AluSx SINE Alu -2 310 3 216 165 22 114 chr3 4830796 4830901 -222693677 - MIR SINE MIR -62 146 56 21 36 0 0 chr3 4831103 4831131 -222693447 + AT_rich Low_complexity Low_complexity 1 28 0 1857 158 18 0 chr3 4831135 4831419 -222693159 - AluJo SINE Alu -23 289 1 863 168 0 0 chr3 4832279 4832404 -222692174 - AluJb SINE Alu -187 125 1 1544 192 3 36 chr3 4832448 4832756 -222691822 - AluJo SINE Alu -14 298 1 2275 104 0 0 chr3 4832979 4833277 -222691301 + AluSx SINE Alu 12 309 -3 672 178 8 0 chr3 4833486 4833604 -222690974 + MLT1D LTR MaLR 387 505 0 499 258 141 0 chr3 4833944 4834107 -222690471 + MIR SINE MIR 32 217 -45 180 77 0 0 chr3 4834195 4834221 -222690357 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1752 139 58 41 chr3 4834560 4834855 -222689723 - AluSx SINE Alu -12 300 1 2761 229 23 76 chr3 4835321 4835370 -222689208 - L1ME1 LINE L1 -6 6160 6110 1870 135 153 42 chr3 4835370 4835681 -222688897 + MSTA LTR MaLR 1 365 -63 2467 49 0 30 chr3 4835681 4835986 -222688592 - AluY SINE Alu -15 296 1 1870 135 153 42 chr3 4835986 4836059 -222688519 + MSTA LTR MaLR 365 428 0 2761 229 23 76 chr3 4836059 4836242 -222688336 - L1ME1 LINE L1 -56 6110 5919 2217 112 0 0 chr3 4836242 4836536 -222688042 - AluSg SINE Alu -16 294 1 2761 229 23 76 chr3 4836536 4837039 -222687539 - L1ME1 LINE L1 -247 5919 5391 2077 131 7 0 chr3 4837039 4837330 -222687248 + AluSg SINE Alu 1 293 -17 2761 229 23 76 chr3 4837330 4837389 -222687189 - L1ME1 LINE L1 -775 5391 5408 1524 175 39 39 chr3 4837389 4837674 -222686904 - AluJb SINE Alu -27 285 1 2761 229 23 76 chr3 4837674 4837732 -222686846 - L1ME1 LINE L1 -757 5409 5350 2800 252 61 25 chr3 4837776 4838804 -222685774 - L1ME1 LINE L1 -1790 4356 3292 266 50 25 0 chr3 4838839 4838879 -222685699 + (TC)n Simple_repeat Simple_repeat 1 41 0 932 213 189 7 chr3 4838879 4838955 -222685623 - MER2 DNA MER2_type 0 344 283 2335 92 0 0 chr3 4838955 4839250 -222685328 + AluSx SINE Alu 5 299 -13 932 213 189 7 chr3 4839250 4839464 -222685114 - MER2 DNA MER2_type -61 283 1 1863 97 37 23 chr3 4840022 4840322 -222684256 + AluSq SINE Alu 1 304 -9 4588 91 21 21 chr3 4841929 4842388 -222682190 - PABL_A LTR ERV1 -9 651 190 2371 93 0 7 chr3 4842388 4842698 -222681880 + AluSx SINE Alu 1 308 -4 4588 91 21 21 chr3 4842698 4842889 -222681689 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 4843360 4843383 -222681195 + AT_rich Low_complexity Low_complexity 1 23 0 580 99 148 10 chr3 4843388 4843489 -222681089 - FLAM_C SINE Alu -24 119 5 862 131 77 0 chr3 4843538 4843668 -222680910 + FRAM SINE Alu 20 159 -17 253 354 20 0 chr3 4843878 4843977 -222680601 - MIR SINE MIR -154 108 8 479 236 48 36 chr3 4844265 4844430 -222680148 + MER5B DNA MER1_type 11 177 -1 775 143 80 166 chr3 4844657 4844872 -222679706 - MER33 DNA MER1_type -2265 320 145 1735 167 20 7 chr3 4844872 4845166 -222679412 + AluJb SINE Alu 1 298 -14 775 143 80 166 chr3 4845166 4845300 -222679278 - MER33 DNA MER1_type -2440 145 1 8138 14 0 0 chr3 4845536 4846769 -222677809 + L1HS LINE L1 4923 6155 0 226 229 0 0 chr3 4846771 4846832 -222677746 + A-rich Low_complexity Low_complexity 1 61 0 1678 151 17 31 chr3 4847352 4847643 -222676935 + AluJb SINE Alu 9 295 -17 305 265 34 23 chr3 4848637 4848766 -222675812 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 4849200 4849370 -222675208 - MIR SINE MIR -1 261 51 1747 137 17 30 chr3 4849370 4849669 -222674909 - AluSx SINE Alu -9 303 9 8206 61 2 2 chr3 4849979 4851026 -222673552 + L1P LINE L1 1098 2144 -4002 325 116 0 0 chr3 4851360 4851419 -222673159 + Alu SINE Alu 1 40 -261 654 125 0 0 chr3 4851419 4851515 -222673063 + AluSg/x SINE Alu 208 303 -9 180 152 0 0 chr3 4852080 4852113 -222672465 + (CAT)n Simple_repeat Simple_repeat 1 33 0 753 135 0 0 chr3 4852301 4852412 -222672166 + MLT2A1 LTR ERVL 288 398 -46 457 196 17 12 chr3 4852428 4852601 -222671977 + (TA)n Simple_repeat Simple_repeat 2 175 0 310 279 23 0 chr3 4852604 4852690 -222671888 - L1MC4 LINE L1 -1340 6702 6615 453 147 0 0 chr3 4852691 4852786 -222671792 + (TA)n Simple_repeat Simple_repeat 2 96 0 415 73 0 0 chr3 4852794 4852849 -222671729 + MLT2A2 LTR ERVL 399 453 0 3773 177 29 2 chr3 4852851 4853474 -222671104 + MER52-int LTR ERV1 2400 3039 -4052 21 71 0 0 chr3 4853626 4853668 -222670910 + AT_rich Low_complexity Low_complexity 1 42 0 2533 119 3 13 chr3 4853788 4854167 -222670411 + THE1C LTR MaLR 1 375 0 2924 93 82 102 chr3 4854167 4854694 -222669884 + THE1C-int LTR MaLR 1 516 -1064 9235 45 4 0 chr3 4854818 4855948 -222668630 - L1P LINE L1 -1184 4962 3828 26 30 0 0 chr3 4856697 4856730 -222667848 + AT_rich Low_complexity Low_complexity 1 33 0 1863 97 37 23 chr3 4857980 4858280 -222666298 - AluSq SINE Alu -9 304 1 930 213 189 7 chr3 4858838 4859052 -222665526 + MER2 DNA MER2_type 1 283 -61 2335 92 0 0 chr3 4859052 4859347 -222665231 - AluSx SINE Alu -13 299 5 930 213 189 7 chr3 4859347 4859423 -222665155 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 4859423 4859470 -222665108 + (GA)n Simple_repeat Simple_repeat 1 48 0 2948 249 57 23 chr3 4859498 4860528 -222664050 + L1ME1 LINE L1 3292 4356 -1790 2777 231 45 80 chr3 4860572 4860630 -222663948 + L1ME1 LINE L1 5353 5412 -754 1536 193 14 14 chr3 4860630 4860915 -222663663 + AluJb SINE Alu 1 285 -27 2777 231 45 80 chr3 4860915 4860977 -222663601 + L1ME1 LINE L1 5412 5475 -691 1812 165 7 0 chr3 4860977 4861268 -222663310 - AluSg SINE Alu -17 293 1 2777 231 45 80 chr3 4861268 4861771 -222662807 + L1ME1 LINE L1 5475 5994 -172 2215 113 0 0 chr3 4861771 4862064 -222662514 + AluSg SINE Alu 1 293 -17 2777 231 45 80 chr3 4862064 4862247 -222662331 + L1ME1 LINE L1 5994 6111 -55 1817 140 153 42 chr3 4862247 4862320 -222662258 - MSTA LTR MaLR 0 428 365 2463 52 0 29 chr3 4862320 4862626 -222661952 + AluY SINE Alu 1 297 -14 1817 140 153 42 chr3 4862626 4862937 -222661641 - MSTA LTR MaLR -63 365 1 2777 231 45 80 chr3 4862937 4862986 -222661592 + L1ME1 LINE L1 6111 6160 -6 1752 139 58 41 chr3 4863452 4863747 -222660831 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4864086 4864112 -222660466 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 499 258 141 0 chr3 4864200 4864363 -222660215 - MIR SINE MIR -45 217 32 672 178 8 0 chr3 4864703 4864821 -222659757 - MLT1D LTR MaLR 0 505 387 2176 99 51 0 chr3 4865030 4865324 -222659254 - AluSx SINE Alu -3 309 1 426 230 104 22 chr3 4865692 4865827 -222658751 + L2 LINE L2 3122 3267 -5 2272 128 0 0 chr3 4868573 4868878 -222655700 + AluSg SINE Alu 1 305 -5 184 358 0 0 chr3 4869147 4869214 -222655364 - L2 LINE L2 -1 3271 3205 267 315 63 14 chr3 4869364 4869507 -222655071 - MIR SINE MIR -101 161 12 213 121 0 0 chr3 4869545 4869578 -222655000 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 537 188 240 19 chr3 4869756 4869910 -222654668 - MER53 DNA DNA 0 189 2 2330 101 7 0 chr3 4870170 4870478 -222654100 - AluSp SINE Alu -3 310 1 287 246 144 8 chr3 4870748 4870866 -222653712 - L2 LINE L2 -10 3303 3170 845 223 36 16 chr3 4871117 4871310 -222653268 + MER58A DNA MER1_type 19 215 -9 1759 128 7 40 chr3 4871310 4871607 -222652971 + AluJb SINE Alu 13 299 -13 2163 101 0 3 chr3 4872233 4872529 -222652049 + AluSc SINE Alu 1 295 -14 183 302 52 10 chr3 4872908 4873004 -222651574 - L2 LINE L2 -652 2662 2563 322 292 93 83 chr3 4874131 4874432 -222650146 - L2 LINE L2 -9 3263 2960 768 209 12 6 chr3 4874832 4874995 -222649583 + MER5A DNA MER1_type 1 164 -25 1493 182 10 42 chr3 4875031 4875344 -222649234 + AluJo SINE Alu 1 303 -9 1446 145 0 0 chr3 4876439 4876660 -222647918 + L1PB3 LINE L1 5934 6154 0 208 235 123 0 chr3 4877703 4877784 -222646794 - MIR3 SINE MIR -16 192 102 1899 72 103 4 chr3 4879082 4879344 -222645234 - AluSc SINE Alu -17 292 5 22 0 0 0 chr3 4879579 4879601 -222644977 + AT_rich Low_complexity Low_complexity 1 22 0 2350 72 6 28 chr3 4879991 4880309 -222644269 - AluY SINE Alu 0 311 1 240 234 261 0 chr3 4880412 4880523 -222644055 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 4880624 4880862 -222643716 - L2 LINE L2 -825 2489 2232 2307 104 0 3 chr3 4881209 4881508 -222643070 - AluSx SINE Alu -14 298 1 320 316 18 9 chr3 4882004 4882118 -222642460 + L2 LINE L2 3158 3272 0 1875 149 3 3 chr3 4882292 4882574 -222642004 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 4882648 4882758 -222641820 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 4883210 4883348 -222641230 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 4884160 4884453 -222640125 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 4884555 4884854 -222639724 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 4885438 4885568 -222639010 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 4885651 4885808 -222638770 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 4885966 4886473 -222638105 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 4886491 4886706 -222637872 - MER58A DNA MER1_type 0 224 1 1300 304 170 13 chr3 4886917 4887711 -222636867 - L3 LINE CR1 -107 1470 552 1387 186 50 47 chr3 4888135 4888279 -222636299 + AluJo SINE Alu 1 143 -169 1468 198 0 62 chr3 4888279 4888602 -222635976 + AluSx SINE Alu 1 303 -9 1387 186 50 47 chr3 4888602 4888758 -222635820 + AluJo SINE Alu 143 302 -10 373 157 157 0 chr3 4890287 4890376 -222634202 + MIR SINE MIR 120 222 -40 207 0 0 0 chr3 4890721 4890744 -222633834 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 4891282 4891345 -222633233 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 4891655 4891685 -222632893 + AT_rich Low_complexity Low_complexity 1 30 0 243 333 0 41 chr3 4892734 4892905 -222631673 + GA-rich Low_complexity Low_complexity 4 167 0 * 251 288 23 11 chr3 4892810 4892916 -222631662 + GA-rich Low_complexity Low_complexity 1 107 0 263 217 0 17 chr3 4893535 4893595 -222630983 - MER91 DNA MER1_type -1 139 81 1899 72 103 4 chr3 4893949 4894211 -222630367 - AluSc SINE Alu -17 292 5 186 310 0 69 chr3 4894307 4894394 -222630184 + MIR SINE MIR 33 113 -149 22 0 0 0 chr3 4894446 4894468 -222630110 + AT_rich Low_complexity Low_complexity 1 22 0 2568 53 0 22 chr3 4894858 4895176 -222629402 - AluY SINE Alu 0 311 1 309 245 96 11 chr3 4895458 4895552 -222629026 - MER69 DNA AcHobo 0 2526 2425 927 209 90 0 chr3 4895552 4895753 -222628825 + L1MD2 LINE L1 5944 6162 -197 2262 121 0 0 chr3 4895753 4896058 -222628520 + AluSp SINE Alu 1 305 -8 282 329 31 38 chr3 4896222 4896383 -222628195 - MIR SINE MIR -55 153 39 281 26 0 26 chr3 4897118 4897157 -222627421 + (CA)n Simple_repeat Simple_repeat 2 39 0 1543 113 0 18 chr3 4900540 4900761 -222623817 - AluSg SINE Alu -93 217 1 257 267 150 0 chr3 4900823 4900943 -222623635 - L1ME LINE L1 -279 5842 5705 189 346 30 20 chr3 4901006 4901107 -222623471 - L2 LINE L2 -2 3270 3169 657 167 79 0 chr3 4901221 4901335 -222623243 + FLAM_C SINE Alu 2 124 -19 396 0 0 0 chr3 4901431 4901475 -222623103 + (TG)n Simple_repeat Simple_repeat 2 45 0 1697 195 7 0 chr3 4901476 4901768 -222622810 - AluJb SINE Alu -18 294 1 2168 98 28 0 chr3 4902515 4902801 -222621777 + AluSx SINE Alu 1 294 -18 1221 181 42 0 chr3 4903229 4903444 -222621134 + MER58A DNA MER1_type 1 224 0 1960 221 47 10 chr3 4903462 4903969 -222620609 + L1M4 LINE L1 4413 4938 -1208 264 350 57 13 chr3 4904127 4904284 -222620294 - MIR3 SINE MIR 0 208 45 826 169 0 0 chr3 4904367 4904497 -222620081 + FLAM_A SINE Alu 3 132 -1 2222 114 23 0 chr3 4905081 4905380 -222619198 - AluJb SINE Alu -6 306 1 2206 106 7 0 chr3 4905484 4905777 -222618801 - AluSx SINE Alu -17 295 1 287 246 144 8 chr3 4906047 4906165 -222618413 - L2 LINE L2 -10 3303 3170 845 223 36 16 chr3 4906416 4906609 -222617969 + MER58A DNA MER1_type 19 215 -9 1759 128 7 40 chr3 4906609 4906906 -222617672 + AluJb SINE Alu 13 299 -13 2163 101 0 3 chr3 4907532 4907828 -222616750 + AluSc SINE Alu 1 295 -14 183 302 52 10 chr3 4908207 4908303 -222616275 - L2 LINE L2 -652 2662 2563 322 292 93 83 chr3 4909430 4909731 -222614847 - L2 LINE L2 -9 3263 2960 768 209 12 6 chr3 4910131 4910294 -222614284 + MER5A DNA MER1_type 1 164 -25 1636 169 6 49 chr3 4910330 4910655 -222613923 + AluJo SINE Alu 1 311 -1 270 0 0 0 chr3 4911671 4911701 -222612877 + (TC)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 4912433 4912455 -222612123 + AT_rich Low_complexity Low_complexity 1 22 0 2497 91 0 0 chr3 4912616 4912925 -222611653 - AluSg SINE Alu -1 309 1 257 267 150 0 chr3 4912987 4913107 -222611471 - L1ME LINE L1 -279 5842 5705 201 386 30 0 chr3 4913172 4913273 -222611305 - L2 LINE L2 0 3272 3169 680 149 79 0 chr3 4913387 4913501 -222611077 + FLAM_C SINE Alu 2 124 -19 216 0 0 0 chr3 4913597 4913621 -222610957 + (TG)n Simple_repeat Simple_repeat 2 25 0 1697 195 7 0 chr3 4913622 4913914 -222610664 - AluJb SINE Alu -18 294 1 2168 98 28 0 chr3 4914662 4914948 -222609630 + AluSx SINE Alu 1 294 -18 24 53 0 0 chr3 4915786 4915824 -222608754 + AT_rich Low_complexity Low_complexity 1 38 0 239 119 0 51 chr3 4917895 4917954 -222606624 + (CTA)n Simple_repeat Simple_repeat 1 56 0 383 246 53 18 chr3 4918577 4918691 -222605887 + MIR3 SINE MIR 14 131 -77 1871 146 35 0 chr3 4919715 4919886 -222604692 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 4919886 4919932 -222604646 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1871 146 35 0 chr3 4919932 4920048 -222604530 - AluSx SINE Alu -200 112 1 253 109 455 0 chr3 4920437 4920492 -222604086 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 4920943 4921254 -222603324 + AluSx SINE Alu 1 313 0 1934 163 0 0 chr3 4921273 4921561 -222603017 - AluJb SINE Alu -19 293 6 986 124 0 7 chr3 4921561 4921698 -222602880 - AluJb SINE Alu -176 136 1 301 136 0 0 chr3 4921698 4921742 -222602836 - Alu SINE Alu -258 44 1 * 560 134 93 64 chr3 4921742 4921913 -222602665 + Charlie5 DNA MER1_type 2445 2620 0 479 236 48 36 chr3 4922140 4922305 -222602273 - MER5B DNA MER1_type -1 177 11 238 301 27 0 chr3 4922600 4922673 -222601905 + MIR SINE MIR 8 82 -180 862 131 77 0 chr3 4922909 4923039 -222601539 - FRAM SINE Alu -17 159 20 555 109 148 10 chr3 4923088 4923189 -222601389 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 4923194 4923217 -222601361 + AT_rich Low_complexity Low_complexity 1 23 0 4655 90 17 21 chr3 4923688 4923882 -222600696 + PABL_A LTR ERV1 1 194 -466 2261 94 0 7 chr3 4923882 4924179 -222600399 - AluSx SINE Alu -17 295 1 4655 90 17 21 chr3 4924179 4924638 -222599940 + PABL_A LTR ERV1 194 651 -9 1244 148 0 0 chr3 4926074 4926257 -222598321 - AluSg/x SINE Alu -16 296 114 195 298 48 24 chr3 4926426 4926510 -222598068 + MIR SINE MIR 155 240 -22 2004 145 0 16 chr3 4926532 4926835 -222597743 - AluSx SINE Alu -14 298 1 29 0 0 0 chr3 4926835 4926864 -222597714 + AT_rich Low_complexity Low_complexity 1 29 0 515 277 141 5 chr3 4927384 4927590 -222596988 - MIR SINE MIR -6 256 23 1595 142 47 4 chr3 4927606 4927972 -222596606 + LTR47A LTR ERVL 1 436 -16 1818 169 156 5 chr3 4927972 4928344 -222596234 - MSTA LTR MaLR 0 428 1 1595 142 47 4 chr3 4928344 4928362 -222596216 + LTR47A LTR ERVL 436 452 0 316 293 75 34 chr3 4928376 4928523 -222596055 + LTR47A-int LTR ERVL 15 167 -5176 685 171 43 41 chr3 4928665 4928859 -222595719 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 4928876 4929157 -222595421 + MER41B LTR ERV1 1 282 -353 4746 221 83 39 chr3 4929160 4929381 -222595197 + LTR49-int LTR ERV1 891 1101 -3090 836 134 0 30 chr3 4929381 4929539 -222595039 + FLAM_C SINE Alu 1 154 0 4746 221 83 39 chr3 4929539 4930538 -222594040 + LTR49-int LTR ERV1 1101 2165 -2026 2207 64 37 7 chr3 4930538 4930833 -222593745 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 4930853 4930882 -222593696 + (CA)n Simple_repeat Simple_repeat 2 30 0 390 36 18 18 chr3 4930886 4930941 -222593637 + MLT2A1 LTR ERVL 399 453 0 4568 148 38 67 chr3 4930942 4932423 -222592155 + LTR49-int LTR ERV1 4411 6064 -258 2338 145 133 2 chr3 4932435 4932835 -222591743 + LTR47A LTR ERVL 1 452 0 244 206 72 52 chr3 4934274 4934371 -222590207 + MLT1J2 LTR MaLR 42 140 -310 1519 174 98 113 chr3 4934639 4934853 -222589725 + MLT1D LTR MaLR 1 217 -288 3356 160 6 2 chr3 4934853 4935378 -222589200 + MER1A DNA MER1_type 1 527 0 1519 174 98 113 chr3 4935378 4935676 -222588902 + MLT1D LTR MaLR 217 505 0 323 291 122 17 chr3 4935766 4935938 -222588640 - MIR SINE MIR 0 262 73 3887 113 24 5 chr3 4936009 4936600 -222587978 + LTR43 LTR ERV1 1 602 0 216 318 53 60 chr3 4937223 4937295 -222587283 + MIR SINE MIR 72 143 -119 2288 83 48 0 chr3 4937295 4937584 -222586994 + AluSc SINE Alu 1 303 -6 216 318 53 60 chr3 4937584 4937662 -222586916 + MIR SINE MIR 143 221 -41 239 329 0 37 chr3 4938197 4938279 -222586299 + L2 LINE L2 3192 3270 -2 795 233 30 40 chr3 4938532 4938734 -222585844 + MIR SINE MIR 37 236 -26 1509 199 57 37 chr3 4938789 4938899 -222585679 + MLT2D LTR ERVL 1 107 -307 2370 60 0 13 chr3 4938899 4939198 -222585380 - AluY SINE Alu -16 295 1 1509 199 57 37 chr3 4939198 4939308 -222585270 + MLT2D LTR ERVL 107 213 -201 2488 193 23 69 chr3 4939308 4939949 -222584629 - LTR9 LTR ERV1 0 612 1 1509 199 57 37 chr3 4939949 4940130 -222584448 + MLT2D LTR ERVL 213 411 -3 1016 254 81 47 chr3 4940132 4940577 -222584001 + MLT1D LTR MaLR 46 505 0 2286 110 3 0 chr3 4941968 4942278 -222582300 + AluSx SINE Alu 1 311 -1 844 183 56 5 chr3 4942278 4942475 -222582103 + L1MD2 LINE L1 6152 6358 -1 259 348 38 52 chr3 4943419 4943629 -222580949 + L2 LINE L2 2564 2770 -544 557 268 87 70 chr3 4943821 4944120 -222580458 + MER5C DNA MER1_type 21 324 0 525 247 195 0 chr3 4944396 4944570 -222580008 + MIR SINE MIR 49 256 -6 3241 160 30 3 chr3 4944625 4945231 -222579347 - L1MB2 LINE L1 0 6171 5550 2135 116 3 16 chr3 4945232 4945542 -222579036 - AluSx SINE Alu -3 309 4 251 253 24 60 chr3 4946330 4946413 -222578165 + MIR SINE MIR 48 127 -81 2428 77 0 3 chr3 4946517 4946827 -222577751 + AluY SINE Alu 1 309 -2 575 177 9 18 chr3 4947074 4947187 -222577391 - MER58A DNA MER1_type 0 112 1 2073 105 28 0 chr3 4947615 4947901 -222576677 - AluSx SINE Alu -18 294 1 1819 142 7 0 chr3 4948342 4948624 -222575954 - AluSg SINE Alu -15 295 12 1527 198 3 36 chr3 4948847 4949155 -222575423 + AluJb SINE Alu 1 298 -14 870 168 0 0 chr3 4949199 4949324 -222575254 + AluJb SINE Alu 1 125 -187 920 107 15 7 chr3 4949952 4950797 -222573781 + HSATII Satellite Satellite 1 851 0 869 74 17 51 chr3 4950823 4950998 -222573580 + HSATII Satellite Satellite 1 169 -1 965 116 12 14 chr3 4951024 4952573 -222572005 + HSATII Satellite Satellite 1 1545 0 986 114 14 16 chr3 4952599 4954287 -222570291 + HSATII Satellite Satellite 1 1685 -27 965 117 8 15 chr3 4954309 4955979 -222568599 + HSATII Satellite Satellite 1 1658 -18 1015 88 6 18 chr3 4956019 4956190 -222568388 + HSATII Satellite Satellite 1 169 -1 953 129 3 16 chr3 4956539 4956894 -222567684 + HSATII Satellite Satellite 1 350 -1 998 118 12 14 chr3 4956924 4960156 -222564422 + HSATII Satellite Satellite 1 3225 -1 932 102 16 13 chr3 4960186 4960694 -222563884 + HSATII Satellite Satellite 1 509 -47 793 110 0 24 chr3 4960803 4961017 -222563561 + HSATII Satellite Satellite 1 208 -18 959 110 10 18 chr3 4961057 4962641 -222561937 + HSATII Satellite Satellite 1 1572 -121 977 117 14 14 chr3 4962663 4965725 -222558853 + HSATII Satellite Satellite 1 3060 -23 932 126 18 20 chr3 4965747 4966339 -222558239 + HSATII Satellite Satellite 1 590 0 1036 110 11 15 chr3 4966362 4971349 -222553229 + HSATII Satellite Satellite 1 4967 -1 998 108 12 9 chr3 4971379 4974452 -222550126 + HSATII Satellite Satellite 1 3084 -2 967 110 15 17 chr3 4974486 4976217 -222548361 + HSATII Satellite Satellite 1 1726 -3 977 113 13 12 chr3 4976231 4976736 -222547842 + HSATII Satellite Satellite 1 505 -1 959 111 16 12 chr3 4976774 4978381 -222546197 + HSATII Satellite Satellite 1 1614 0 959 107 7 16 chr3 4978404 4979520 -222545058 + HSATII Satellite Satellite 1 1105 -121 953 121 16 15 chr3 4979542 4981442 -222543136 + HSATII Satellite Satellite 1 1901 0 959 110 5 14 chr3 4981465 4982127 -222542451 + HSATII Satellite Satellite 1 656 -9 783 117 18 23 chr3 4982158 4982329 -222542249 + HSATII Satellite Satellite 1 170 0 911 122 12 19 chr3 4982354 4983196 -222541382 + HSATII Satellite Satellite 1 836 0 998 115 15 13 chr3 4983379 4987034 -222537544 + HSATII Satellite Satellite 1 3663 0 998 115 12 12 chr3 4987057 4989847 -222534731 + HSATII Satellite Satellite 1 2788 -99 386 300 55 9 chr3 4990328 4990438 -222534140 + L2 LINE L2 3153 3267 -5 1805 132 69 0 chr3 4990561 4990850 -222533728 - AluSx SINE Alu -3 309 1 477 290 95 68 chr3 4991021 4991242 -222533336 - MIR SINE MIR -34 228 2 359 337 53 60 chr3 4991243 4991633 -222532945 + L2 LINE L2 2686 3074 -198 1105 184 120 5 chr3 4993072 4993289 -222531289 + AluJb SINE Alu 58 299 -13 1702 187 33 3 chr3 4993430 4993729 -222530849 + AluJo SINE Alu 1 308 -4 875 144 0 41 chr3 4998722 4998868 -222525710 + AluSg/x SINE Alu 137 276 -36 753 215 7 0 chr3 4999123 4999272 -222525306 - L1 LINE L1 -1063 5083 4934 943 227 20 49 chr3 5000152 5000399 -222524179 + MIR SINE MIR 2 241 -21 1096 157 8 44 chr3 5001449 5001697 -222522881 - AluJb SINE Alu -5 307 69 22 56 0 0 chr3 5002005 5002041 -222522537 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 5002083 5002104 -222522474 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 5002108 5002132 -222522446 + GC_rich Low_complexity Low_complexity 1 24 0 36 26 0 0 chr3 5002177 5002215 -222522363 + GC_rich Low_complexity Low_complexity 1 38 0 487 125 0 12 chr3 5003631 5003711 -222520867 + AluS SINE Alu 227 305 -6 22 0 0 0 chr3 5003872 5003894 -222520684 + AT_rich Low_complexity Low_complexity 1 22 0 320 122 3 0 chr3 5003995 5004053 -222520525 + Alu SINE Alu 251 298 -4 2022 121 4 4 chr3 5004153 5004455 -222520123 + AluSx SINE Alu 1 302 0 664 148 16 0 chr3 5004455 5004583 -222519995 + L1MB8 LINE L1 5187 5316 -830 833 199 6 0 chr3 5004585 5004741 -222519837 + FRAM SINE Alu 1 40 0 4484 182 19 25 chr3 5004744 5005624 -222518954 + L1MB8 LINE L1 5304 6178 0 2004 137 0 22 chr3 5005905 5006220 -222518358 - AluSx SINE Alu -2 310 3 216 165 22 114 chr3 5006335 5006440 -222518138 - MIR SINE MIR -62 146 56 21 36 0 0 chr3 5006642 5006670 -222517908 + AT_rich Low_complexity Low_complexity 1 28 0 1845 158 18 0 chr3 5006674 5006958 -222517620 - AluJo SINE Alu -23 289 1 858 168 0 0 chr3 5007818 5007943 -222516635 - AluJb SINE Alu -187 125 1 1523 192 3 36 chr3 5007987 5008295 -222516283 - AluJo SINE Alu -14 298 1 2266 104 0 0 chr3 5008518 5008816 -222515762 + AluSx SINE Alu 12 309 -3 670 178 8 0 chr3 5009025 5009143 -222515435 + MLT1D LTR MaLR 387 505 0 546 278 131 0 chr3 5009483 5009659 -222514919 + MIR SINE MIR 32 230 -32 180 77 0 0 chr3 5009734 5009760 -222514818 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1738 139 58 41 chr3 5010099 5010394 -222514184 - AluSx SINE Alu -12 300 1 2799 229 23 76 chr3 5010860 5010909 -222513669 - L1ME1 LINE L1 -6 6160 6110 2008 138 153 42 chr3 5010909 5011220 -222513358 + MSTA LTR MaLR 1 365 -63 2441 49 0 30 chr3 5011220 5011525 -222513053 - AluY SINE Alu -15 296 1 2008 138 153 42 chr3 5011525 5011598 -222512980 + MSTA LTR MaLR 365 428 0 2799 229 23 76 chr3 5011598 5011781 -222512797 - L1ME1 LINE L1 -56 6110 5919 2196 112 0 0 chr3 5011781 5012075 -222512503 - AluSg SINE Alu -16 294 1 2799 229 23 76 chr3 5012075 5012578 -222512000 - L1ME1 LINE L1 -247 5919 5391 2060 131 7 0 chr3 5012578 5012869 -222511709 + AluSg SINE Alu 1 293 -17 2799 229 23 76 chr3 5012869 5012928 -222511650 - L1ME1 LINE L1 -775 5391 5408 1508 175 39 39 chr3 5012928 5013213 -222511365 - AluJb SINE Alu -27 285 1 2799 229 23 76 chr3 5013213 5013271 -222511307 - L1ME1 LINE L1 -757 5409 5350 3013 251 57 23 chr3 5013315 5014345 -222510233 - L1ME1 LINE L1 -1790 4356 3292 272 70 23 0 chr3 5014373 5014416 -222510162 + (TC)n Simple_repeat Simple_repeat 1 44 0 1022 210 189 7 chr3 5014416 5014492 -222510086 - MER2 DNA MER2_type 0 344 283 2327 94 0 0 chr3 5014492 5014791 -222509787 + AluSx SINE Alu 5 303 -9 1022 210 189 7 chr3 5014791 5015005 -222509573 - MER2 DNA MER2_type -61 283 1 1798 100 37 23 chr3 5015563 5015863 -222508715 + AluSq SINE Alu 1 304 -9 4654 90 17 21 chr3 5017470 5017929 -222506649 - PABL_A LTR ERV1 -9 651 194 2233 94 0 7 chr3 5017929 5018226 -222506352 + AluSx SINE Alu 1 295 -17 4654 90 17 21 chr3 5018226 5018420 -222506158 - PABL_A LTR ERV1 -466 194 1 23 0 0 0 chr3 5018891 5018914 -222505664 + AT_rich Low_complexity Low_complexity 1 23 0 598 109 148 10 chr3 5018919 5019020 -222505558 - FLAM_C SINE Alu -24 119 5 854 131 77 0 chr3 5019069 5019199 -222505379 + FRAM SINE Alu 20 159 -17 264 375 17 0 chr3 5019388 5019508 -222505070 - MIR SINE MIR -133 129 8 533 236 48 36 chr3 5019803 5019968 -222504610 + MER5B DNA MER1_type 11 177 -1 833 129 103 189 chr3 5020195 5020410 -222504168 - MER33 DNA MER1_type -2265 320 145 1720 167 20 7 chr3 5020410 5020704 -222503874 + AluJb SINE Alu 1 298 -14 833 129 103 189 chr3 5020704 5020838 -222503740 - MER33 DNA MER1_type -2440 145 1 8077 14 2 0 chr3 5021074 5022304 -222502274 + L1HS LINE L1 4923 6154 -1 201 39 0 0 chr3 5022340 5022366 -222502212 + (A)n Simple_repeat Simple_repeat 1 26 0 1702 144 17 31 chr3 5022886 5023177 -222501401 + AluJb SINE Alu 9 295 -17 575 204 160 18 chr3 5024562 5024787 -222499791 - MER112 DNA MER1_type 0 260 4 1676 209 107 43 chr3 5025388 5025900 -222498678 - MER90 LTR ERV1 0 614 70 2096 141 13 0 chr3 5026253 5026558 -222498020 - AluJo SINE Alu -3 309 1 206 292 79 22 chr3 5026689 5026778 -222497800 + MIR3 SINE MIR 90 183 -25 1917 233 175 50 chr3 5027206 5028125 -222496453 - HAL1 LINE L1 -134 2373 1340 469 321 77 9 chr3 5028127 5028466 -222496112 - HAL1 LINE L1 -1216 1291 930 492 288 113 19 chr3 5028596 5028808 -222495770 - HAL1 LINE L1 -1842 665 434 204 342 57 19 chr3 5029150 5029308 -222495270 + L2 LINE L2 2917 3080 -192 1871 154 3 13 chr3 5029325 5029636 -222494942 - AluJb SINE Alu -4 308 1 2317 67 35 0 chr3 5030409 5030692 -222493886 + AluY SINE Alu 1 293 -18 484 227 302 0 chr3 5030694 5030866 -222493712 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 5030910 5030966 -222493612 + (CA)n Simple_repeat Simple_repeat 1 56 0 477 288 41 7 chr3 5031013 5031159 -222493419 - MER117 DNA MER1_type -36 161 11 374 352 49 6 chr3 5031461 5031623 -222492955 - MIR SINE MIR -13 249 81 713 254 215 0 chr3 5031891 5032096 -222492482 - MIR SINE MIR -8 254 6 494 306 0 0 chr3 5032815 5032926 -222491652 + MER81 DNA DNA 4 114 0 273 249 239 23 chr3 5033088 5033204 -222491374 - L1ME LINE L1 -577 5544 5454 1731 149 72 0 chr3 5033204 5033480 -222491098 + AluSx SINE Alu 1 296 -16 273 249 239 23 chr3 5033480 5033603 -222490975 - L1ME LINE L1 -667 5454 5254 265 368 60 8 chr3 5034604 5034721 -222489857 - L2 LINE L2 0 3313 3191 2430 69 3 0 chr3 5034831 5035135 -222489443 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 5035804 5035928 -222488650 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 5036438 5036638 -222487940 + MIR SINE MIR 31 253 -9 24 32 0 0 chr3 5038412 5038443 -222486135 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr3 5041464 5041487 -222483091 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1055 130 0 34 chr3 5041798 5041975 -222482603 - AluSg/x SINE Alu -15 294 124 256 267 67 33 chr3 5045128 5045218 -222479360 - MIR SINE MIR -157 105 13 1890 151 18 0 chr3 5045458 5045743 -222478835 - AluJb SINE Alu -14 298 9 235 254 211 7 chr3 5046639 5046781 -222477797 + L1MC/D LINE L1 4531 4701 -1445 275 282 57 0 chr3 5046818 5046942 -222477636 + L1MC/D LINE L1 5695 5825 -1983 245 295 105 11 chr3 5047529 5047624 -222476954 + L3 LINE CR1 1196 1299 -278 1688 188 40 3 chr3 5047715 5048040 -222476538 - MER1B DNA MER1_type 0 337 1 563 280 13 13 chr3 5048293 5048443 -222476135 - MIR SINE MIR -79 183 34 360 232 36 94 chr3 5048447 5048476 -222476102 - L2 LINE L2 -2 3311 3282 2557 98 30 6 chr3 5048476 5048842 -222475736 + THE1C LTR MaLR 1 375 0 360 232 36 94 chr3 5048842 5048950 -222475628 - L2 LINE L2 -31 3282 3182 26 0 0 0 chr3 5050011 5050037 -222474541 + AT_rich Low_complexity Low_complexity 1 26 0 547 300 143 29 chr3 5050308 5050852 -222473726 + L1MC4a LINE L1 4633 5238 -908 348 236 183 21 chr3 5050888 5051079 -222473499 + L1MC4a LINE L1 5296 5517 -2291 1688 80 0 0 chr3 5051121 5051334 -222473244 - AluSg SINE Alu -97 213 1 292 211 273 19 chr3 5051469 5051630 -222472948 + L1MC4a LINE L1 5748 5949 -1859 3374 133 107 6 chr3 5053482 5054116 -222470462 + Tigger1 DNA MER2_type 63 760 -1658 * 7682 127 30 8 chr3 5054107 5055419 -222469159 + Tigger1 DNA MER2_type 1079 2418 0 2365 123 5 32 chr3 5055748 5056122 -222468456 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 5059539 5059560 -222465018 + AT_rich Low_complexity Low_complexity 1 21 0 1771 190 7 3 chr3 5059637 5059932 -222464646 - AluSx SINE Alu -16 296 1 28 0 0 0 chr3 5059980 5060008 -222464570 + AT_rich Low_complexity Low_complexity 1 28 0 390 363 57 6 chr3 5060116 5060273 -222464305 + MIR3 SINE MIR 20 184 -24 2160 112 3 0 chr3 5060461 5060756 -222463822 - AluSp SINE Alu -17 296 1 275 87 0 43 chr3 5061368 5061414 -222463164 - L2 LINE L2 -75 3238 3195 527 281 67 12 chr3 5062126 5062290 -222462288 + MER5B DNA MER1_type 6 178 0 2086 121 0 0 chr3 5062704 5063009 -222461569 - AluSx SINE Alu 0 305 1 2223 112 0 13 chr3 5064010 5064313 -222460265 + AluSx SINE Alu 1 299 -13 1905 187 74 71 chr3 5065105 5065700 -222458878 - L1MC3 LINE L1 0 7785 7189 258 262 24 12 chr3 5065701 5065785 -222458793 - MLT1F1 LTR MaLR -443 124 40 276 163 0 0 chr3 5065789 5065838 -222458740 - L1MC3 LINE L1 -692 7093 7045 329 365 0 0 chr3 5065838 5065953 -222458625 + MIR3 SINE MIR 71 185 -23 2290 112 0 0 chr3 5066109 5066412 -222458166 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 5066440 5066463 -222458115 + AT_rich Low_complexity Low_complexity 1 23 0 920 146 189 5 chr3 5066626 5066811 -222457767 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 5067654 5067692 -222456886 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 383 301 155 14 chr3 5068689 5068908 -222455670 + MIR SINE MIR 13 262 0 192 293 35 0 chr3 5069621 5069679 -222454899 - MIR3 SINE MIR -37 171 112 231 368 42 0 chr3 5070407 5070502 -222454076 + MIR3 SINE MIR 68 166 -42 207 0 0 0 chr3 5071627 5071650 -222452928 + (TA)n Simple_repeat Simple_repeat 2 24 0 1805 164 7 20 chr3 5071653 5071951 -222452627 - AluJb SINE Alu -18 294 1 1108 265 70 26 chr3 5071980 5072545 -222452033 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 5072578 5072606 -222451972 + AT_rich Low_complexity Low_complexity 1 28 0 199 298 0 0 chr3 5072683 5072740 -222451838 + L2 LINE L2 3255 3311 -2 305 195 26 26 chr3 5072755 5072832 -222451746 + MLT1L LTR MaLR 3 79 -536 365 303 48 0 chr3 5073438 5073603 -222450975 + Charlie8 DNA MER1_type 85 257 -2160 468 0 0 0 chr3 5073617 5073669 -222450909 + (TG)n Simple_repeat Simple_repeat 2 53 0 210 296 59 89 chr3 5074850 5074985 -222449593 + MIR SINE MIR 17 147 -61 626 242 65 107 chr3 5074994 5075349 -222449229 - MLT1I LTR MaLR -7 402 63 201 237 0 0 chr3 5075441 5075500 -222449078 + (TA)n Simple_repeat Simple_repeat 1 59 0 300 290 30 53 chr3 5076228 5076359 -222448219 - L2 LINE L2 -4 3309 3182 293 235 43 17 chr3 5076891 5077006 -222447572 + L1ME LINE L1 5630 5747 -374 330 267 0 11 chr3 5077015 5077105 -222447473 + LTR67 LTR ERVL 460 548 -9 459 63 0 0 chr3 5077105 5077168 -222447410 + (CA)n Simple_repeat Simple_repeat 2 64 0 31 76 0 0 chr3 5077418 5077484 -222447094 + AT_rich Low_complexity Low_complexity 1 66 0 285 296 61 17 chr3 5077836 5077951 -222446627 - MIR SINE MIR -6 256 137 22 35 0 0 chr3 5078429 5078458 -222446120 + AT_rich Low_complexity Low_complexity 1 29 0 811 211 80 0 chr3 5080038 5080213 -222444365 + MLT1D LTR MaLR 4 192 -313 1256 191 17 39 chr3 5080213 5080444 -222444134 + AluJo SINE Alu 1 226 -86 648 222 63 16 chr3 5081349 5081538 -222443040 + MIR SINE MIR 44 241 -21 1378 166 115 86 chr3 5081556 5082073 -222442505 + LTR36 LTR ERV1 1 611 0 730 236 220 0 chr3 5082235 5082693 -222441885 + LTR50 LTR ERVL 140 795 0 960 287 89 2 chr3 5082770 5083164 -222441414 + L1ME3A LINE L1 5291 5718 -452 422 78 16 0 chr3 5083164 5083228 -222441350 + MER41B LTR ERV1 481 545 -90 1061 242 66 44 chr3 5083274 5083702 -222440876 + L1ME3A LINE L1 5730 6162 -8 2243 123 3 0 chr3 5083801 5084110 -222440468 - AluSq SINE Alu -3 310 1 209 373 15 0 chr3 5084277 5084344 -222440234 + L2 LINE L2 3198 3265 -7 199 208 260 39 chr3 5084717 5084794 -222439784 + MIR3 SINE MIR 63 156 -52 387 256 53 0 chr3 5084850 5084983 -222439595 - MER117 DNA MER1_type -56 141 2 231 291 0 0 chr3 5084985 5085040 -222439538 + MIR3 SINE MIR 154 208 0 327 274 183 7 chr3 5085947 5086100 -222438478 + MIR3 SINE MIR 15 194 -14 186 283 170 28 chr3 5086476 5086582 -222437996 + MIR3 SINE MIR 84 204 -4 220 324 14 0 chr3 5086827 5086901 -222437677 + (TA)n Simple_repeat Simple_repeat 1 75 0 1889 197 16 101 chr3 5087081 5087628 -222436950 - MLT1D LTR MaLR -2 503 3 360 364 23 6 chr3 5087720 5087896 -222436682 - MIR3 SINE MIR -13 195 17 216 171 0 0 chr3 5088271 5088306 -222436272 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 216 210 65 32 chr3 5088334 5088396 -222436182 - L2 LINE L2 -42 3230 3167 298 347 200 7 chr3 5088416 5088566 -222436012 + MER5A DNA MER1_type 1 179 -10 2738 103 8 5 chr3 5089463 5089850 -222434728 - L1PB1 LINE L1 -1 6150 5763 23 0 0 0 chr3 5089909 5089932 -222434646 + AT_rich Low_complexity Low_complexity 1 23 0 438 333 0 0 chr3 5089940 5090051 -222434527 - L2 LINE L2 -5 3267 3157 1071 103 0 7 chr3 5091168 5091314 -222433264 + AluSg/x SINE Alu 135 279 -30 415 253 114 32 chr3 5091709 5091867 -222432711 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 5092033 5092234 -222432344 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 5092234 5092551 -222432027 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 5092551 5092907 -222431671 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 5093208 5093390 -222431188 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 5093475 5093786 -222430792 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 5093762 5093804 -222430774 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 5094633 5094854 -222429724 - MIR SINE MIR -5 257 18 2426 96 0 0 chr3 5095029 5095341 -222429237 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 5095862 5096062 -222428516 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 5096308 5096454 -222428124 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 5096455 5096542 -222428036 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 5096723 5096880 -222427698 - MIR SINE MIR 0 262 104 5415 129 16 5 chr3 5097934 5098750 -222425828 + L1MC1 LINE L1 5509 6333 0 542 239 43 111 chr3 5099020 5099162 -222425416 + Charlie8 DNA MER1_type 2 123 -218 2145 109 0 50 chr3 5099162 5099483 -222425095 - AluSx SINE Alu -3 309 5 542 239 43 111 chr3 5099483 5099574 -222425004 + Charlie8 DNA MER1_type 123 219 -122 272 375 13 33 chr3 5099877 5100029 -222424549 + MIR3 SINE MIR 21 169 -39 345 232 72 65 chr3 5100085 5100223 -222424355 - MER103 DNA DNA -18 148 10 621 317 176 32 chr3 5101329 5101670 -222422908 + L3 LINE CR1 751 1140 -437 2433 121 22 25 chr3 5101673 5102038 -222422540 - THE1B LTR MaLR 0 364 1 189 288 225 0 chr3 5102130 5102210 -222422368 + L3 LINE CR1 1188 1285 -292 1274 177 42 103 chr3 5102282 5102593 -222421985 - AluJo SINE Alu -20 292 1 1721 170 10 10 chr3 5102608 5102908 -222421670 - AluJo SINE Alu -12 300 1 1928 147 3 13 chr3 5103842 5104155 -222420423 + AluJb SINE Alu 1 310 -2 297 320 70 31 chr3 5104390 5104518 -222420060 - L2 LINE L2 -8 3264 3132 2351 132 33 33 chr3 5105289 5105583 -222418995 + THE1B LTR MaLR 1 297 -67 1994 125 3 14 chr3 5105583 5105880 -222418698 - AluSx SINE Alu -18 294 1 2351 132 33 33 chr3 5105880 5105949 -222418629 + THE1B LTR MaLR 296 364 0 4922 172 27 34 chr3 5107473 5108859 -222415719 - L1MB3 LINE L1 -2 6181 4810 193 276 0 52 chr3 5108969 5109027 -222415551 - MIR3 SINE MIR -146 62 8 439 239 92 23 chr3 5109198 5109328 -222415250 + MLT1J2 LTR MaLR 37 175 -275 349 289 47 57 chr3 5109667 5109878 -222414700 - MLT1I LTR MaLR -26 383 175 2055 109 35 109 chr3 5109878 5110283 -222414295 - THE1C LTR MaLR 0 375 1 747 290 136 18 chr3 5110292 5110733 -222413845 + L2 LINE L2 2821 3313 0 407 300 110 11 chr3 5112051 5112252 -222412326 - MIR SINE MIR -25 237 19 2249 185 41 30 chr3 5113615 5114079 -222410499 + MLT2B1 LTR ERVL 1 469 -51 273 196 21 93 chr3 5114118 5114215 -222410363 - L1MC4 LINE L1 -1339 6703 6614 * 276 170 0 130 chr3 5114129 5114229 -222410349 + L1MC4 LINE L1 6617 6703 -1339 213 175 0 0 chr3 5114229 5114269 -222410309 + (TATG)n Simple_repeat Simple_repeat 4 43 0 422 16 0 109 chr3 5114272 5114336 -222410242 + MLT2B1 LTR ERVL 464 520 0 690 297 72 43 chr3 5114429 5114869 -222409709 - Charlie8 DNA MER1_type -2145 272 1 21 0 0 0 chr3 5115353 5115374 -222409204 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 5116695 5116723 -222407855 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr3 5116722 5116749 -222407829 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 1883 169 7 0 chr3 5116749 5117056 -222407522 - AluJb SINE Alu -3 309 1 27 49 0 0 chr3 5117056 5117097 -222407481 + AT_rich Low_complexity Low_complexity 1 41 0 798 188 17 104 chr3 5117515 5117755 -222406823 - MER20 DNA MER1_type 0 219 1 1335 215 87 36 chr3 5117876 5118282 -222406296 + MER113 DNA MER1_type? 3 440 -81 4294 139 67 10 chr3 5118282 5118970 -222405608 + LTR8A LTR ERV1 1 727 0 1335 215 87 36 chr3 5118970 5119056 -222405522 + MER113 DNA MER1_type? 440 520 -1 220 286 48 24 chr3 5119287 5119371 -222405207 + MIR SINE MIR 155 240 -22 1988 145 0 16 chr3 5119393 5119696 -222404882 - AluSx SINE Alu -14 298 1 28 0 0 0 chr3 5119696 5119724 -222404854 + AT_rich Low_complexity Low_complexity 1 28 0 577 277 141 5 chr3 5120240 5120446 -222404132 - MIR SINE MIR -6 256 23 1590 142 47 4 chr3 5120462 5120828 -222403750 + LTR47A LTR ERVL 1 436 -16 1953 169 156 5 chr3 5120828 5121200 -222403378 - MSTA LTR MaLR 0 428 1 1590 142 47 4 chr3 5121200 5121218 -222403360 + LTR47A LTR ERVL 436 452 0 307 293 75 34 chr3 5121232 5121379 -222403199 + LTR47A-int LTR ERVL 15 167 -5176 699 171 43 41 chr3 5121521 5121715 -222402863 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 5121732 5122013 -222402565 + MER41B LTR ERV1 1 282 -353 4759 221 82 41 chr3 5122016 5122237 -222402341 + LTR49-int LTR ERV1 891 1101 -3090 892 129 0 30 chr3 5122237 5122395 -222402183 + FLAM_C SINE Alu 1 154 0 4759 221 82 41 chr3 5122395 5123394 -222401184 + LTR49-int LTR ERV1 1101 2165 -2026 2202 64 37 7 chr3 5123394 5123689 -222400889 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 5123709 5123738 -222400840 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 36 18 18 chr3 5123742 5123797 -222400781 + MLT2A1 LTR ERVL 399 453 0 4812 142 47 58 chr3 5123798 5125279 -222399299 + LTR49-int LTR ERV1 4411 6064 -258 2338 148 133 2 chr3 5125291 5125691 -222398887 + LTR47A LTR ERVL 1 452 0 277 209 132 62 chr3 5127098 5127227 -222397351 + MLT1J2 LTR MaLR 3 140 -310 1714 174 98 113 chr3 5127495 5127709 -222396869 + MLT1D LTR MaLR 1 217 -288 3621 158 6 2 chr3 5127709 5128234 -222396344 + MER1A DNA MER1_type 1 527 0 1714 174 98 113 chr3 5128234 5128532 -222396046 + MLT1D LTR MaLR 217 505 0 302 291 122 17 chr3 5128622 5128794 -222395784 - MIR SINE MIR 0 262 73 4187 118 24 5 chr3 5128865 5129456 -222395122 + LTR43 LTR ERV1 1 602 0 214 308 55 62 chr3 5130079 5130151 -222394427 + MIR SINE MIR 72 143 -119 2289 83 48 0 chr3 5130151 5130440 -222394138 + AluSc SINE Alu 1 303 -6 214 308 55 62 chr3 5130440 5130513 -222394065 + MIR SINE MIR 143 216 -46 238 329 0 37 chr3 5131054 5131136 -222393442 + L2 LINE L2 3192 3270 -2 786 216 32 42 chr3 5131389 5131579 -222392999 + MIR SINE MIR 37 224 -38 237 143 24 24 chr3 5131596 5131638 -222392940 + MLT1D LTR MaLR 1 42 -463 1679 184 62 42 chr3 5131646 5131756 -222392822 + MLT2D LTR ERVL 1 107 -307 2393 60 0 13 chr3 5131756 5132055 -222392523 - AluY SINE Alu -16 295 1 1679 184 62 42 chr3 5132055 5132165 -222392413 + MLT2D LTR ERVL 107 213 -201 2775 195 22 68 chr3 5132165 5132807 -222391771 - LTR9 LTR ERV1 0 612 1 1679 184 62 42 chr3 5132807 5132988 -222391590 + MLT2D LTR ERVL 213 411 -3 1185 254 81 47 chr3 5132990 5133435 -222391143 + MLT1D LTR MaLR 46 505 0 234 222 139 28 chr3 5134117 5134225 -222390353 + MER113 DNA MER1_type? 1 120 -401 2076 128 6 10 chr3 5134826 5135170 -222389408 + AluSx SINE Alu 1 343 0 296 183 42 0 chr3 5136907 5136978 -222387600 - MER116 DNA Mariner -6 74 1 1445 258 11 8 chr3 5137404 5137760 -222386818 - MLT1A2 LTR MaLR -14 360 4 671 306 73 25 chr3 5137947 5138470 -222386108 - L1ME4a LINE L1 -224 5897 5350 352 262 69 48 chr3 5138682 5138827 -222385751 - MLT1K LTR MaLR -167 421 274 321 267 11 7 chr3 5139121 5139242 -222385336 + LTR43 LTR ERV1 223 472 -207 253 229 148 0 chr3 5140089 5140150 -222384428 + L2 LINE L2 3201 3270 -2 249 291 0 25 chr3 5140153 5140232 -222384346 + MIR3 SINE MIR 132 208 0 403 296 23 109 chr3 5140403 5140660 -222383918 + MIR SINE MIR 19 253 -9 30 0 0 0 chr3 5141372 5141402 -222383176 + AT_rich Low_complexity Low_complexity 1 30 0 1334 201 0 76 chr3 5141402 5141496 -222383082 - AluJo SINE Alu -32 280 180 1993 173 12 6 chr3 5141496 5141837 -222382741 - MER61A LTR ERV1 0 343 1 1334 201 0 76 chr3 5141837 5142045 -222382533 - AluJo SINE Alu -132 180 1 458 243 87 28 chr3 5142246 5142406 -222382172 + MIR3 SINE MIR 20 180 -48 304 264 110 110 chr3 5142534 5142761 -222381817 + MIR SINE MIR 4 230 -32 1337 155 4 52 chr3 5142762 5143014 -222381564 - THE1B LTR MaLR 0 364 125 4969 62 1 3 chr3 5143014 5143672 -222380906 - THE1B-int LTR MaLR -923 657 1 1997 115 81 32 chr3 5143672 5144019 -222380559 - THE1B LTR MaLR 0 364 1 188 235 0 0 chr3 5144079 5144113 -222380465 + MIR3 SINE MIR 151 184 -24 1915 143 0 13 chr3 5144113 5144413 -222380165 - AluSx SINE Alu -16 296 1 477 40 40 0 chr3 5144571 5144647 -222379931 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 179 37 10 chr3 5144655 5145057 -222379521 - L1ME1 LINE L1 -7 6159 5747 548 228 8 0 chr3 5145101 5145228 -222379350 - L1ME1 LINE L1 -521 5645 5518 1165 239 84 16 chr3 5145238 5145606 -222378972 - MLT1D LTR MaLR 0 505 113 1182 151 58 92 chr3 5145618 5145952 -222378626 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 5145995 5146078 -222378500 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 5146089 5146259 -222378319 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 5146259 5146566 -222378012 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 5146566 5146974 -222377604 - L1ME1 LINE L1 -825 5341 4902 1950 161 0 3 chr3 5148200 5148499 -222376079 - AluJo SINE Alu -14 298 1 232 332 158 21 chr3 5149567 5149757 -222374821 + L3 LINE CR1 1009 1224 -353 181 152 61 0 chr3 5149814 5149847 -222374731 + MER5B DNA MER1_type 11 45 -133 722 209 120 0 chr3 5150022 5150180 -222374398 + MER45A DNA AcHobo 2 178 0 2276 94 3 0 chr3 5151759 5152057 -222372521 - AluSx SINE Alu -13 299 1 581 183 0 48 chr3 5152649 5152775 -222371803 - Tigger2 DNA MER2_type 0 2718 2599 569 240 0 0 chr3 5152772 5152893 -222371685 + MER45A DNA AcHobo 57 177 -1 * 1774 117 78 3 chr3 5153101 5153408 -222371170 - Tigger2 DNA MER2_type -116 2602 2273 266 254 30 0 chr3 5153398 5153465 -222371113 - Tigger2 DNA MER2_type -2649 69 1 * 348 325 42 6 chr3 5153724 5153890 -222370688 + MIR3 SINE MIR 30 201 -7 266 254 30 0 chr3 5154397 5154464 -222370114 + Tigger2 DNA MER2_type 1 69 -2649 * 336 139 241 13 chr3 5154454 5154533 -222370045 + Tigger2 DNA MER2_type 2273 2369 -349 336 286 30 75 chr3 5155109 5155242 -222369336 + L2 LINE L2 2943 3069 -203 400 353 0 0 chr3 5155556 5155678 -222368900 + MIR3 SINE MIR 72 193 -15 3960 121 29 7 chr3 5156097 5156717 -222367861 + MER41B LTR ERV1 2 635 0 632 288 101 5 chr3 5156719 5156938 -222367640 - MIR SINE MIR 0 262 23 3452 211 51 36 chr3 5157506 5158595 -222365983 + L1MC4a LINE L1 6700 7805 -3 641 190 29 36 chr3 5158613 5158750 -222365828 - AluJo SINE Alu -176 136 1 1745 166 3 19 chr3 5158865 5159178 -222365400 + AluJb SINE Alu 5 312 0 230 245 0 0 chr3 5159300 5159353 -222365225 - L2 LINE L2 -4 3309 3257 1902 102 35 0 chr3 5160263 5160518 -222364060 + AluSq SINE Alu 49 312 -1 2234 127 0 0 chr3 5160919 5161219 -222363359 - AluSx SINE Alu -12 300 1 192 258 45 15 chr3 5162131 5162197 -222362381 - L2 LINE L2 -1 3312 3245 2473 162 7 20 chr3 5162680 5163119 -222361459 - Tigger2a DNA MER2_type 0 434 2 222 37 0 0 chr3 5163131 5163158 -222361420 + (TA)n Simple_repeat Simple_repeat 2 28 0 324 294 167 11 chr3 5163337 5163517 -222361061 + MLT1J1 LTR MaLR 68 275 -171 252 363 189 19 chr3 5163892 5164258 -222360320 - L2 LINE L2 -344 2970 2543 968 204 75 45 chr3 5164292 5164625 -222359953 + MER2 DNA MER2_type 1 343 -1 665 283 70 86 chr3 5166308 5166898 -222357680 + MLT1K LTR MaLR 9 588 0 3411 191 43 32 chr3 5167317 5167589 -222356989 - L1MB8 LINE L1 -5 6173 5906 1951 177 67 98 chr3 5167589 5168272 -222356306 + MER4A LTR ERV1 3 664 0 3411 191 43 32 chr3 5168272 5168854 -222355724 - L1MB8 LINE L1 -272 5906 5309 736 259 70 5 chr3 5169061 5169246 -222355332 + MIR SINE MIR 29 225 -37 289 349 88 17 chr3 5169418 5169656 -222354922 - L2 LINE L2 -1195 2119 1865 2338 112 7 0 chr3 5171132 5171437 -222353141 + AluSx SINE Alu 1 307 -5 222 278 19 0 chr3 5171573 5171627 -222352951 + L2 LINE L2 3237 3291 -22 354 325 117 13 chr3 5171656 5171887 -222352691 + MIR SINE MIR 8 262 0 1845 109 0 0 chr3 5171919 5172158 -222352420 - AluSc SINE Alu -70 239 1 271 95 0 0 chr3 5172182 5172224 -222352354 - L1MCa LINE L1 -4195 2231 2190 635 171 99 13 chr3 5172235 5172387 -222352191 - L1MB3 LINE L1 -8 6175 6011 429 247 64 16 chr3 5172380 5172566 -222352012 - L1MCb LINE L1 -4219 2263 2068 * 1501 228 30 37 chr3 5172585 5173076 -222351502 - L1MA9 LINE L1 -41 6271 5784 260 136 0 0 chr3 5173130 5173174 -222351404 + L1M4 LINE L1 5731 5774 -400 * 986 172 0 0 chr3 5173173 5173359 -222351219 - L1MA9 LINE L1 -552 5782 5597 * 2807 214 78 19 chr3 5173357 5174465 -222350113 - L1MCb LINE L1 -4434 2003 713 281 87 0 22 chr3 5174467 5174513 -222350065 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1226 90 6 0 chr3 5174526 5174704 -222349874 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1030 228 47 37 chr3 5174734 5175032 -222349546 - L1MCb LINE L1 -5190 717 417 818 266 31 35 chr3 5175111 5175401 -222349177 - L1MCb LINE L1 -5480 427 139 237 258 45 11 chr3 5175422 5175511 -222349067 - L1MCb LINE L1 -6316 110 19 216 0 0 0 chr3 5175773 5175797 -222348781 + (A)n Simple_repeat Simple_repeat 1 24 0 364 261 17 25 chr3 5175809 5175928 -222348650 - MLT1K LTR MaLR -339 249 132 22 0 0 0 chr3 5176547 5176569 -222348009 + AT_rich Low_complexity Low_complexity 1 22 0 353 253 111 25 chr3 5176691 5177011 -222347567 - MLT1K LTR MaLR -35 553 158 478 269 304 0 chr3 5177130 5177301 -222347277 - MIR SINE MIR -1 261 39 1631 147 27 17 chr3 5178031 5178324 -222346254 + MSTA LTR MaLR 133 428 0 508 258 89 72 chr3 5178346 5178771 -222345807 - MLT1H LTR MaLR -1 592 3 203 328 0 0 chr3 5178894 5178961 -222345617 - MIR SINE MIR 0 262 196 398 35 0 18 chr3 5178987 5179044 -222345534 + (TA)n Simple_repeat Simple_repeat 2 57 0 610 261 133 11 chr3 5179062 5179090 -222345488 - MIR SINE MIR -44 218 195 279 0 0 0 chr3 5179090 5179121 -222345457 + (CA)n Simple_repeat Simple_repeat 2 32 0 610 261 133 11 chr3 5179121 5179280 -222345298 - MIR SINE MIR -67 195 8 1087 175 0 0 chr3 5179396 5179562 -222345016 + FRAM SINE Alu 1 166 -10 1258 245 28 3 chr3 5180089 5180416 -222344162 - MER58B DNA MER1_type -6 335 1 3552 113 72 26 chr3 5181006 5182084 -222342494 + MER11A LTR ERVK 1 1232 -4 11735 207 24 17 chr3 5182237 5186146 -222338432 + L1PA16 LINE L1 2234 6164 -2 260 244 154 0 chr3 5187488 5187611 -222336967 - L3 LINE CR1 -215 1362 1221 664 286 54 17 chr3 5187613 5187854 -222336724 + MIR SINE MIR 13 262 0 314 192 202 61 chr3 5187934 5188033 -222336545 - MER81 DNA DNA -1 113 1 292 289 195 27 chr3 5188583 5188732 -222335846 - L3 LINE CR1 -1127 450 277 313 267 69 15 chr3 5189880 5190011 -222334567 - MIR SINE MIR -90 172 35 523 348 42 42 chr3 5190123 5190309 -222334269 + L2 LINE L2 2465 2653 -661 1058 197 16 0 chr3 5190309 5190492 -222334086 - MER5A DNA MER1_type -3 186 1 523 348 42 42 chr3 5190492 5190618 -222333960 + L2 LINE L2 2652 2777 -537 621 234 105 0 chr3 5190626 5190750 -222333828 - FRAM SINE Alu -39 137 1 590 308 195 11 chr3 5190812 5191176 -222333402 + L2 LINE L2 2881 3311 -2 1713 182 0 20 chr3 5191653 5191955 -222332623 - AluJo SINE Alu -16 296 1 911 327 74 13 chr3 5191979 5192267 -222332311 + MLT1K LTR MaLR 94 422 -166 2302 122 73 14 chr3 5192267 5192621 -222331957 + THE1C LTR MaLR 1 375 0 911 327 74 13 chr3 5192621 5192791 -222331787 + MLT1K LTR MaLR 422 580 -8 195 325 98 16 chr3 5193083 5193206 -222331372 + MIR3 SINE MIR 73 205 -3 281 261 81 0 chr3 5194257 5194368 -222330210 + MER53 DNA DNA 70 189 0 1266 171 33 12 chr3 5194444 5194684 -222329894 - MIR SINE MIR -7 255 11 1148 208 5 18 chr3 5195869 5196090 -222328488 + MER20 DNA MER1_type 2 219 0 2168 180 64 10 chr3 5197218 5197624 -222326954 - MSTB1 LTR MaLR 0 432 5 279 272 110 73 chr3 5197847 5197928 -222326650 - MIR3 SINE MIR -34 174 85 927 239 159 44 chr3 5197928 5198292 -222326286 + MLT1I LTR MaLR 3 408 -1 279 272 110 73 chr3 5198292 5198346 -222326232 - MIR3 SINE MIR -123 85 34 3565 159 67 20 chr3 5198524 5199165 -222325413 - LTR51 LTR ERV1 0 671 1 321 211 0 0 chr3 5199940 5199997 -222324581 + L2 LINE L2 3216 3272 0 26 30 0 0 chr3 5200306 5200339 -222324239 + AT_rich Low_complexity Low_complexity 1 33 0 981 185 29 62 chr3 5200528 5200771 -222323807 + MER106A DNA MER1_type 1 235 -1 1740 169 3 14 chr3 5201314 5201635 -222322943 + AluJb SINE Alu 2 312 0 915 196 12 12 chr3 5202109 5202277 -222322301 - AluJo SINE Alu -24 288 121 319 313 92 35 chr3 5202306 5202708 -222321870 - L1M4 LINE L1 -2412 3734 3310 723 203 114 47 chr3 5202731 5202967 -222321611 - L1MB8 LINE L1 -2 6176 5925 850 131 0 22 chr3 5203773 5203910 -222320668 - L1MB8 LINE L1 -598 5693 5560 316 250 75 0 chr3 5203911 5203991 -222320587 - MIR SINE MIR -91 171 86 196 192 19 58 chr3 5204106 5204158 -222320420 - MIR3 SINE MIR -14 194 145 45 19 0 0 chr3 5204227 5204279 -222320299 + AT_rich Low_complexity Low_complexity 1 52 0 364 306 104 8 chr3 5204544 5204678 -222319900 - MLT1I LTR MaLR -244 165 19 568 179 32 0 chr3 5204771 5204894 -222319684 - MER53 DNA DNA 0 189 63 512 206 167 39 chr3 5204947 5205127 -222319451 + MER113 DNA MER1_type? 274 476 -45 246 239 28 42 chr3 5205199 5205270 -222319308 - MIR SINE MIR -62 146 77 1574 186 67 25 chr3 5206473 5206800 -222317778 - MER58B DNA MER1_type 0 341 1 2229 126 82 15 chr3 5207036 5207377 -222317201 - THE1B LTR MaLR 0 364 1 11951 86 6 3 chr3 5207382 5208947 -222315631 - THE1B-int LTR MaLR -9 1571 1 2261 131 76 15 chr3 5208947 5209290 -222315288 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr3 5209442 5209467 -222315111 + AT_rich Low_complexity Low_complexity 1 25 0 424 309 210 22 chr3 5209605 5209929 -222314649 + L2 LINE L2 2887 3271 -1 391 279 202 6 chr3 5209931 5210114 -222314464 + MIR SINE MIR 20 238 -24 221 277 0 0 chr3 5210084 5210131 -222314447 + L2 LINE L2 3254 3300 -13 * 246 174 43 33 chr3 5210131 5210223 -222314355 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 208 200 22 0 chr3 5211398 5211443 -222313135 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1961 206 80 49 chr3 5211926 5212415 -222312163 + MLT1D LTR MaLR 2 505 0 270 246 282 0 chr3 5212499 5212609 -222311969 + MER5A DNA MER1_type 49 189 0 1893 212 51 22 chr3 5213801 5214249 -222310329 + MLT1C LTR MaLR 6 466 -1 1886 151 18 0 chr3 5214254 5214533 -222310045 + AluSx SINE Alu 19 302 -10 324 322 0 0 chr3 5214556 5214671 -222309907 - MIR SINE MIR -6 256 142 2276 111 3 0 chr3 5214681 5214979 -222309599 - AluSx SINE Alu -13 299 1 367 338 8 8 chr3 5215497 5215630 -222308948 - MIR3 SINE MIR -65 143 11 270 254 0 0 chr3 5215666 5215776 -222308802 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 22 56 0 0 chr3 5216145 5216181 -222308397 + AT_rich Low_complexity Low_complexity 1 36 0 273 360 26 0 chr3 5216567 5216681 -222307897 - MIR SINE MIR -44 218 102 344 266 53 44 chr3 5216954 5217067 -222307511 - MIR3 SINE MIR -25 183 70 381 293 94 17 chr3 5217147 5217242 -222307336 + MIR SINE MIR 30 116 -146 1653 167 0 61 chr3 5217242 5217401 -222307177 - AluJb SINE Alu -20 292 160 2183 99 0 0 chr3 5217401 5217673 -222306905 - AluSx SINE Alu -17 295 24 1653 167 0 61 chr3 5217673 5217824 -222306754 - AluJb SINE Alu -152 160 1 381 293 94 17 chr3 5217824 5217909 -222306669 + MIR SINE MIR 116 224 -38 1078 250 23 101 chr3 5218053 5218821 -222305757 - L2 LINE L2 0 3313 2624 884 286 118 32 chr3 5218836 5219210 -222305368 + MLT1J2 LTR MaLR 15 420 -30 841 294 38 55 chr3 5219270 5219617 -222304961 - L2 LINE L2 -685 2629 2289 806 197 84 64 chr3 5219632 5219835 -222304743 - MER63A DNA MER1_type -2 208 2 204 322 0 46 chr3 5220272 5220359 -222304219 + MIR SINE MIR 130 212 -50 21 0 0 0 chr3 5220928 5220949 -222303629 + AT_rich Low_complexity Low_complexity 1 21 0 288 307 88 0 chr3 5221571 5221708 -222302870 + L3 LINE CR1 716 864 -713 2781 66 43 3 chr3 5221926 5222276 -222302302 - THE1B LTR MaLR 0 364 1 201 381 44 17 chr3 5222869 5223050 -222301528 + L3 LINE CR1 1154 1339 -238 681 293 18 26 chr3 5223092 5223321 -222301257 - MIR SINE MIR -29 233 7 229 274 60 24 chr3 5223345 5223429 -222301149 + L3 LINE CR1 1358 1444 -133 190 274 55 14 chr3 5223843 5223916 -222300662 + L3 LINE CR1 1467 1542 -35 1827 173 141 3 chr3 5225045 5225421 -222299157 + MSTA LTR MaLR 1 428 0 254 281 26 61 chr3 5225564 5225678 -222298900 - MIR SINE MIR -122 140 31 247 299 149 65 chr3 5225734 5225935 -222298643 - MIR SINE MIR -17 245 28 348 279 35 87 chr3 5226237 5226282 -222298296 + MER5B DNA MER1_type 4 50 -128 1866 208 19 6 chr3 5226282 5226642 -222297936 + MLT1A1 LTR MaLR 1 365 0 348 279 35 87 chr3 5226642 5226768 -222297810 + MER5B DNA MER1_type 50 166 -12 851 206 22 27 chr3 5226939 5227123 -222297455 - MER5A DNA MER1_type -5 184 2 2110 249 48 60 chr3 5227919 5228210 -222296368 - L1ME3A LINE L1 -110 6060 5767 2001 121 0 7 chr3 5228210 5228490 -222296088 + AluSq SINE Alu 1 278 -35 216 0 0 0 chr3 5228492 5228516 -222296062 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 189 94 0 0 chr3 5228522 5228554 -222296024 + (TAAG)n Simple_repeat Simple_repeat 2 33 0 2110 249 48 60 chr3 5228554 5228805 -222295773 - L1ME3A LINE L1 -409 5761 5508 2014 141 37 3 chr3 5228805 5229132 -222295446 - MER44D DNA MER2_type -1 608 1 2110 249 48 60 chr3 5229132 5229482 -222295096 - L1ME3A LINE L1 -662 5508 5175 2264 121 0 7 chr3 5229601 5229907 -222294671 - AluSx SINE Alu -7 305 2 1940 168 12 0 chr3 5232470 5232798 -222291780 + L1MB2 LINE L1 5709 6040 -131 833 174 7 0 chr3 5232841 5232990 -222291588 + L1MB3 LINE L1 6034 6183 0 337 105 18 0 chr3 5233061 5233118 -222291460 + L1MB2 LINE L1 6114 6171 0 1348 314 59 58 chr3 5233225 5234332 -222290246 + L2 LINE L2 2201 3312 -1 198 288 61 15 chr3 5234524 5234590 -222289988 - MIR3 SINE MIR -25 183 115 772 157 9 0 chr3 5234692 5234807 -222289771 - FLAM_C SINE Alu -15 118 3 252 59 0 0 chr3 5236723 5236757 -222287821 + (CA)n Simple_repeat Simple_repeat 2 35 0 2034 185 33 31 chr3 5236811 5237367 -222287211 + MLT2A2 LTR ERVL 1 554 0 1677 186 0 7 chr3 5237857 5238149 -222286429 - AluJo SINE Alu -22 290 3 323 255 20 40 chr3 5238690 5238839 -222285739 - Charlie8 DNA MER1_type -2194 223 78 1160 189 43 13 chr3 5239041 5239274 -222285304 - L1ME1 LINE L1 -4 6162 5923 * 1928 200 113 20 chr3 5239268 5239355 -222285223 - L1MD3 LINE L1 -743 5403 5326 1577 172 46 40 chr3 5239355 5239728 -222284850 + THE1C LTR MaLR 1 375 0 1928 200 113 20 chr3 5239728 5240295 -222284283 - L1MD3 LINE L1 -820 5326 5105 297 0 0 0 chr3 5240295 5240328 -222284250 + (CA)n Simple_repeat Simple_repeat 2 34 0 1928 200 113 20 chr3 5240328 5240492 -222284086 - L1MD3 LINE L1 -1041 5105 4958 246 286 60 8 chr3 5241448 5241506 -222283072 - L2 LINE L2 -1436 1878 1825 2586 52 0 0 chr3 5241506 5241812 -222282766 + AluY SINE Alu 1 306 -5 246 286 60 8 chr3 5241812 5241886 -222282692 - L2 LINE L2 -1489 1825 1739 866 293 57 6 chr3 5242009 5242340 -222282238 + L2 LINE L2 1868 2215 -1099 706 152 0 118 chr3 5242341 5242519 -222282059 + MLT1E2 LTR MaLR 1 157 -469 * 1732 189 13 0 chr3 5242514 5242820 -222281758 + MLT1A1 LTR MaLR 56 365 0 6078 198 88 83 chr3 5242820 5243240 -222281338 + MLT1A1-int LTR MaLR 1 417 -1318 1419 206 16 23 chr3 5243240 5243546 -222281032 - AluJo SINE Alu -8 304 1 6078 198 88 83 chr3 5243546 5244851 -222279727 + MLT1A1-int LTR MaLR 417 1735 0 2060 178 8 11 chr3 5244851 5245217 -222279361 + MLT1A1 LTR MaLR 1 365 0 420 275 35 69 chr3 5245729 5245907 -222278671 + MIR SINE MIR 20 189 -50 465 19 0 0 chr3 5246428 5246482 -222278096 + (CA)n Simple_repeat Simple_repeat 1 54 0 1615 246 73 39 chr3 5247396 5247933 -222276645 + MLT1K LTR MaLR 28 582 -6 180 290 16 16 chr3 5247992 5248054 -222276524 + MIR SINE MIR 83 144 -64 27 0 0 0 chr3 5248436 5248463 -222276115 + AT_rich Low_complexity Low_complexity 1 27 0 211 254 45 0 chr3 5248650 5248717 -222275861 + MIR SINE MIR 182 251 -11 369 250 73 62 chr3 5249584 5249776 -222274802 + MIR SINE MIR 14 207 -55 419 287 61 24 chr3 5250378 5250542 -222274036 + MIR SINE MIR 84 253 -9 489 244 8 39 chr3 5251743 5251870 -222272708 - MLT1F LTR MaLR -332 210 88 297 135 0 0 chr3 5252396 5252448 -222272130 + (GA)n Simple_repeat Simple_repeat 1 52 0 255 350 36 7 chr3 5252501 5252639 -222271939 - MIR SINE MIR -65 143 21 711 289 24 45 chr3 5254552 5254798 -222269780 + MIR SINE MIR 15 255 -7 205 297 16 31 chr3 5254830 5254894 -222269684 - MIR SINE MIR -113 95 33 48 53 0 0 chr3 5255789 5255865 -222268713 + AT_rich Low_complexity Low_complexity 1 76 0 1447 238 3 3 chr3 5256723 5257005 -222267573 + AluJo SINE Alu 4 285 -27 345 47 0 0 chr3 5257035 5257078 -222267500 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 294 18 9 chr3 5257167 5257276 -222267302 - MIR3 SINE MIR -2 206 97 195 129 0 0 chr3 5257338 5257369 -222267209 + (CA)n Simple_repeat Simple_repeat 2 32 0 334 264 35 0 chr3 5257388 5257475 -222267103 + MIR SINE MIR 166 255 -7 212 261 29 14 chr3 5258003 5258072 -222266506 + L3 LINE CR1 1503 1572 -5 264 243 57 86 chr3 5258240 5258380 -222266198 - MIR SINE MIR -3 259 124 261 274 43 26 chr3 5258435 5258552 -222266026 - MIR SINE MIR -59 203 85 191 326 167 0 chr3 5258736 5258957 -222265621 + L2 LINE L2 1441 1698 -1616 382 238 188 13 chr3 5258964 5259214 -222265364 - L1MC4a LINE L1 -224 5897 5602 309 274 11 11 chr3 5259437 5259532 -222265046 + L2 LINE L2 2994 3088 -225 21 36 0 0 chr3 5259539 5259567 -222265011 + AT_rich Low_complexity Low_complexity 1 28 0 2671 87 5 0 chr3 5259567 5259935 -222264643 - L1PB1 LINE L1 0 6151 5782 585 152 53 0 chr3 5259939 5260110 -222264468 + (TA)n Simple_repeat Simple_repeat 1 180 0 354 173 74 0 chr3 5260124 5260286 -222264292 + (TA)n Simple_repeat Simple_repeat 1 174 0 574 52 104 12 chr3 5260311 5260624 -222263954 + (TA)n Simple_repeat Simple_repeat 1 341 0 347 228 232 0 chr3 5260649 5260756 -222263822 + MER5A DNA MER1_type 60 178 0 502 54 27 0 chr3 5261170 5261244 -222263334 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 351 335 107 52 chr3 5262723 5263189 -222261389 + MLT1K LTR MaLR 2 493 -95 527 287 129 30 chr3 5263944 5264855 -222259723 + L1ME3A LINE L1 593 1639 -4671 1297 236 70 90 chr3 5265085 5265870 -222258708 + L1ME3A LINE L1 4439 5207 -922 268 204 62 97 chr3 5265876 5265989 -222258589 + L1ME3A LINE L1 5837 5945 -208 335 270 130 55 chr3 5266029 5266229 -222258349 + L1ME3A LINE L1 5939 6153 0 417 268 149 30 chr3 5266284 5266452 -222258126 + MIR SINE MIR 25 212 -50 294 297 39 42 chr3 5266735 5266905 -222257673 - MIR SINE MIR -69 139 21 540 226 0 0 chr3 5267833 5267939 -222256639 - L2 LINE L2 -19 3294 3189 251 281 0 0 chr3 5267949 5268013 -222256565 + MIR SINE MIR 84 147 -115 2334 98 41 120 chr3 5268454 5268914 -222255664 - MSTC LTR MaLR 0 428 5 1769 109 12 12 chr3 5270603 5270859 -222253719 + AluSg SINE Alu 37 292 -18 1111 282 92 5 chr3 5271268 5271669 -222252909 + L1ME3A LINE L1 5735 6170 0 348 157 22 101 chr3 5271773 5271862 -222252716 + L1ME3A LINE L1 6077 6158 -12 2482 46 3 0 chr3 5274029 5274333 -222250245 + AluY SINE Alu 1 305 -6 231 188 0 0 chr3 5274346 5274394 -222250184 + (TG)n Simple_repeat Simple_repeat 1 48 0 184 246 33 16 chr3 5274446 5274507 -222250071 + L2 LINE L2 2219 2280 -1034 414 343 164 21 chr3 5274533 5274906 -222249672 + L2 LINE L2 2845 3270 -2 24 0 0 0 chr3 5276866 5276890 -222247688 + AT_rich Low_complexity Low_complexity 1 24 0 480 310 28 5 chr3 5277495 5277711 -222246867 + L1M4 LINE L1 3730 3950 -2196 2687 108 10 0 chr3 5278249 5278649 -222245929 - L1PA14 LINE L1 -1 6160 5757 2199 106 3 0 chr3 5279180 5279473 -222245105 + AluSg SINE Alu 1 294 -16 3424 283 97 45 chr3 5279885 5281828 -222242750 + L2 LINE L2 1276 3313 0 637 324 51 19 chr3 5281990 5282305 -222242273 + L1M3c LINE L1 649 973 -5806 231 270 90 10 chr3 5282574 5282674 -222241904 + L1M3c LINE L1 1364 1471 -5378 1769 225 52 85 chr3 5283193 5284061 -222240517 + L1M3c LINE L1 1596 2438 -4411 15449 200 14 16 chr3 5284105 5287461 -222237117 - L1PA15 LINE L1 -1 6815 3453 198 0 0 0 chr3 5287461 5287483 -222237095 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1612 128 4 4 chr3 5287484 5287718 -222236860 - AluSc SINE Alu -32 277 44 15449 200 14 16 chr3 5287718 5288870 -222235708 - L1PA15 LINE L1 -3362 3454 2315 257 231 0 0 chr3 5288907 5288959 -222235619 + L1PA15-16 LINE L1 2365 2416 -4433 369 237 11 0 chr3 5288974 5289067 -222235511 - L1PA15 LINE L1 -5129 1658 1565 * 5831 259 94 34 chr3 5289065 5291244 -222233334 - L1PA13 LINE L1 -4481 2316 2 2140 256 51 24 chr3 5291259 5292630 -222231948 + L1M1 LINE L1 2831 4243 -3322 1050 172 0 22 chr3 5292641 5292868 -222231710 + L1 LINE L1 5111 5332 -814 432 198 69 0 chr3 5292867 5292968 -222231610 + L1MA9 LINE L1 6167 6274 -38 * 300 318 74 7 chr3 5292971 5293119 -222231459 + L1M LINE L1 5272 5429 -2613 460 352 73 40 chr3 5293737 5294064 -222230514 + L1MEd LINE L1 458 795 -5324 7946 88 44 7 chr3 5294170 5296534 -222228044 + L1PB1 LINE L1 1 2614 -4249 2082 165 18 12 chr3 5296544 5297038 -222227540 + L1PB1 LINE L1 2803 3309 -3553 27679 109 48 44 chr3 5297049 5303167 -222221411 + L1PA7 LINE L1 12 6154 0 4127 226 18 5 chr3 5303169 5303739 -222220839 + L1PB1 LINE L1 3299 3893 -2969 216 0 0 0 chr3 5303739 5303763 -222220815 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4127 226 18 5 chr3 5303763 5304281 -222220297 + L1PB1 LINE L1 3893 4402 -2460 6113 159 12 8 chr3 5304288 5306431 -222218147 + L1PB1 LINE L1 4719 6865 -2 300 291 181 0 chr3 5306524 5306651 -222217927 + L1ME LINE L1 5562 5711 -410 3184 121 20 69 chr3 5306709 5307263 -222217315 + MER1A DNA MER1_type 1 527 0 319 340 20 0 chr3 5307686 5307786 -222216792 - L2 LINE L2 -41 3272 3171 1620 177 17 9 chr3 5308097 5308447 -222216131 - L1MA5 LINE L1 -5 6295 5943 2892 166 5 6 chr3 5308447 5309097 -222215481 + L1MA5 LINE L1 5186 5834 -466 348 277 121 40 chr3 5309354 5309502 -222215076 - MIR3 SINE MIR -43 165 7 207 245 20 20 chr3 5311413 5311462 -222213116 - MER5A DNA MER1_type -31 158 110 1063 284 48 48 chr3 5311467 5311992 -222212586 - MLT1H1 LTR MaLR -6 549 25 429 289 55 77 chr3 5312011 5312322 -222212256 - MLT1H1-int LTR MaLR 0 1371 1068 1245 286 91 45 chr3 5313036 5313113 -222211465 + L1M4 LINE L1 992 1064 -5318 2155 109 10 0 chr3 5313113 5313406 -222211172 + AluSx SINE Alu 1 296 -16 1245 286 91 45 chr3 5313406 5315042 -222209536 + L1M4 LINE L1 1064 2623 -3759 1963 142 28 0 chr3 5315042 5315324 -222209254 - AluSx SINE Alu -22 290 1 1245 286 91 45 chr3 5315324 5315335 -222209243 + L1M4 LINE L1 2623 2632 -3750 186 43 0 0 chr3 5315335 5315358 -222209220 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1245 286 91 45 chr3 5315358 5315648 -222208930 + L1M4 LINE L1 2632 3202 -3180 229 283 62 7 chr3 5315729 5315874 -222208704 + L1M4 LINE L1 5482 5634 -748 4874 121 7 5 chr3 5315883 5316627 -222207951 - L1PA13 LINE L1 -11 6152 5408 2288 250 56 34 chr3 5316627 5317470 -222207108 + L1ME3A LINE L1 5305 6165 -5 348 196 155 0 chr3 5317493 5317590 -222206988 - Tigger6 DNA MER2_type 0 1597 1486 2348 100 0 13 chr3 5317590 5317606 -222206972 - AluSx SINE Alu -5 307 292 189 0 0 0 chr3 5317606 5317627 -222206951 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2348 100 0 13 chr3 5317627 5317921 -222206657 - AluSx SINE Alu -20 292 1 528 231 67 0 chr3 5317948 5318082 -222206496 - Tigger6 DNA MER2_type -1453 144 2 335 264 14 0 chr3 5318175 5318247 -222206331 + L2 LINE L2 3198 3270 -2 229 293 98 12 chr3 5318427 5318509 -222206069 - L2 LINE L2 -41 3231 3143 1820 158 0 39 chr3 5318614 5318924 -222205654 + AluJb SINE Alu 1 298 -14 185 270 45 11 chr3 5319320 5319409 -222205169 + L2 LINE L2 3118 3209 -104 470 300 123 43 chr3 5319937 5320481 -222204097 + L2 LINE L2 2448 3029 -243 200 313 45 15 chr3 5320485 5320552 -222204026 - MIR SINE MIR -186 76 8 305 316 0 35 chr3 5320756 5320870 -222203708 + MIR3 SINE MIR 2 111 -97 338 293 22 50 chr3 5320893 5321074 -222203504 + L2 LINE L2 2857 3032 -240 674 263 6 0 chr3 5321086 5321265 -222203313 - LTR16B LTR ERVL 0 464 285 463 250 38 12 chr3 5321318 5321478 -222203100 - LTR16B LTR ERVL -285 179 16 230 325 12 0 chr3 5321488 5321571 -222203007 + MIR3 SINE MIR 118 201 -7 180 333 21 0 chr3 5322108 5322156 -222202422 - L2 LINE L2 -85 3187 3139 423 304 33 72 chr3 5322259 5322535 -222202043 - MER102b DNA MER1_type -34 307 43 288 304 6 17 chr3 5323208 5323345 -222201233 + GA-rich Low_complexity Low_complexity 1 135 0 447 336 61 42 chr3 5326113 5326538 -222198040 + MLT1K LTR MaLR 154 586 -2 539 208 60 140 chr3 5326837 5327102 -222197476 - L2 LINE L2 -15 3298 3055 1089 170 21 30 chr3 5327177 5327412 -222197166 + L1MB7 LINE L1 5587 5819 -365 1593 223 119 10 chr3 5327420 5327900 -222196678 + MER34 LTR ERV1 11 542 0 1498 163 14 3 chr3 5327900 5328182 -222196396 + L1MB7 LINE L1 5809 6093 -91 300 117 50 0 chr3 5328321 5328381 -222196197 + L1MB8 LINE L1 6115 6177 -1 1366 233 41 41 chr3 5328656 5329046 -222195532 - MLT1B LTR MaLR 0 390 1 252 385 24 12 chr3 5329757 5329923 -222194655 + MIR SINE MIR 11 178 -84 250 264 11 66 chr3 5329980 5330071 -222194507 + L2 LINE L2 3227 3312 -1 4311 180 42 13 chr3 5330171 5330915 -222193663 + L1MB3 LINE L1 5188 5974 -209 1737 157 52 0 chr3 5330915 5331201 -222193377 + AluJb SINE Alu 2 302 -10 4311 180 42 13 chr3 5331201 5331410 -222193168 + L1MB3 LINE L1 5974 6175 -8 213 271 17 0 chr3 5331671 5331730 -222192848 + (CA)n Simple_repeat Simple_repeat 2 61 0 1907 151 20 7 chr3 5331796 5332095 -222192483 - AluJb SINE Alu -8 304 2 25 0 0 0 chr3 5332104 5332129 -222192449 + AT_rich Low_complexity Low_complexity 1 25 0 556 187 174 0 chr3 5332942 5333097 -222191481 + L1MB7 LINE L1 5649 5830 -354 597 203 39 0 chr3 5333098 5333251 -222191327 + L1MB7 LINE L1 6010 6168 -16 220 345 60 0 chr3 5333288 5333404 -222191174 - L2 LINE L2 -398 2916 2794 269 330 43 0 chr3 5334211 5334326 -222190252 - L2 LINE L2 0 3313 3194 741 250 74 57 chr3 5334897 5335249 -222189329 - L1MD2 LINE L1 -65 6294 5937 2076 138 0 0 chr3 5336931 5337229 -222187349 + AluSx SINE Alu 1 298 -14 184 410 43 0 chr3 5337698 5337815 -222186763 - MIR3 SINE MIR -3 205 84 222 311 57 77 chr3 5338000 5338248 -222186330 + L2 LINE L2 2836 3078 -194 287 290 80 12 chr3 5338704 5338866 -222185712 - L1MD2 LINE L1 -343 5778 5606 249 341 0 12 chr3 5338999 5339084 -222185494 + L2 LINE L2 2965 3048 -224 969 266 60 43 chr3 5339361 5339729 -222184849 + MLT1K LTR MaLR 209 582 -6 1934 158 0 3 chr3 5340735 5341032 -222183546 - AluJb SINE Alu -16 296 1 392 302 68 63 chr3 5341108 5341505 -222183073 - L1MC4a LINE L1 -1903 5905 5507 312 330 102 19 chr3 5341768 5341983 -222182595 - L1MC4a LINE L1 -762 5384 5152 304 157 43 43 chr3 5342739 5342809 -222181769 + L1ME4a LINE L1 5978 6047 -74 22 0 0 0 chr3 5343438 5343460 -222181118 + AT_rich Low_complexity Low_complexity 1 22 0 344 200 27 91 chr3 5343752 5343844 -222180734 - MLT1K LTR MaLR -284 304 219 2549 104 64 7 chr3 5343844 5344249 -222180329 - MSTA LTR MaLR 0 428 1 344 200 27 91 chr3 5344249 5344266 -222180312 - MLT1K LTR MaLR -369 219 202 1941 239 21 23 chr3 5345577 5346095 -222178483 + L1MEc LINE L1 27 543 -5853 2169 108 0 3 chr3 5346806 5347101 -222177477 - AluSc SINE Alu 0 309 16 397 266 45 52 chr3 5347127 5347281 -222177297 + MLT1J2 LTR MaLR 275 427 -23 363 23 0 0 chr3 5347342 5347386 -222177192 + (TG)n Simple_repeat Simple_repeat 2 45 0 2587 39 0 0 chr3 5347865 5348170 -222176408 + AluYa5 SINE Alu 1 305 -6 438 317 12 30 chr3 5348627 5348794 -222175784 - L2 LINE L2 -3 3310 3147 283 304 7 15 chr3 5348820 5348955 -222175623 + (TA)n Simple_repeat Simple_repeat 1 134 0 234 150 0 0 chr3 5348963 5349003 -222175575 + (TG)n Simple_repeat Simple_repeat 2 41 0 518 251 163 38 chr3 5349007 5349246 -222175332 - L2 LINE L2 -182 3131 2863 409 301 30 54 chr3 5349618 5349821 -222174757 - MIR3 SINE MIR -3 205 8 1659 144 97 0 chr3 5350194 5350472 -222174106 + AluSx SINE Alu 1 305 -7 2247 174 42 3 chr3 5351301 5351685 -222172893 - MER47B DNA MER2_type 0 418 20 260 299 16 55 chr3 5353710 5353837 -222170741 - MLT1K LTR MaLR -248 340 219 433 316 29 37 chr3 5354029 5354222 -222170356 + MIR SINE MIR 3 191 -63 213 98 12 98 chr3 5354652 5354734 -222169844 + (GGGAGA)n Simple_repeat Simple_repeat 2 76 0 1449 108 5 0 chr3 5355185 5355397 -222169181 + L1PB1 LINE L1 5929 6141 -10 322 330 18 28 chr3 5355811 5356029 -222168549 + L1ME LINE L1 5360 5575 -546 2309 100 3 0 chr3 5356602 5356901 -222167677 - AluSg SINE Alu -10 300 1 37 69 0 0 chr3 5357624 5357696 -222166882 + AT_rich Low_complexity Low_complexity 1 72 0 208 267 0 80 chr3 5357702 5357777 -222166801 - MIR SINE MIR -116 146 78 2820 313 96 32 chr3 5359133 5360915 -222163663 + L2 LINE L2 1414 3313 0 212 271 14 29 chr3 5361183 5361253 -222163325 + L2 LINE L2 2923 2991 -322 722 245 76 43 chr3 5361385 5361718 -222162860 + L1ME LINE L1 5266 5610 -554 284 126 13 82 chr3 5361751 5361910 -222162668 + (TA)n Simple_repeat Simple_repeat 2 149 0 529 224 177 47 chr3 5361981 5362235 -222162343 + MLT1E LTR MaLR 304 590 -3 566 221 21 0 chr3 5362287 5362427 -222162151 - Charlie4 DNA MER1_type -9 1952 1810 330 228 13 0 chr3 5362616 5362695 -222161883 - L1M4 LINE L1 -1536 4610 4531 420 259 122 14 chr3 5362789 5362936 -222161642 - MIR SINE MIR -12 250 88 594 177 9 18 chr3 5363153 5363266 -222161312 + LTR52 LTR ERVL 6 117 -304 1341 211 53 12 chr3 5363296 5363619 -222160959 + LTR52 LTR ERVL 86 421 0 353 261 164 42 chr3 5364358 5364630 -222159948 - L1M4 LINE L1 -1630 4516 4278 189 0 0 0 chr3 5364630 5364651 -222159927 + (TAA)n Simple_repeat Simple_repeat 1 21 0 353 261 164 42 chr3 5364651 5364904 -222159674 - L1M4 LINE L1 -1868 4278 3927 428 343 71 23 chr3 5366125 5366559 -222158019 + L1M4 LINE L1 4779 5233 -913 581 274 62 6 chr3 5366608 5366787 -222157791 - MIR SINE MIR -9 253 65 471 263 70 22 chr3 5366791 5367054 -222157524 + L1M2 LINE L1 5266 5535 -658 26 50 0 0 chr3 5367522 5367562 -222157016 + AT_rich Low_complexity Low_complexity 1 40 0 15469 34 0 0 chr3 5369786 5372421 -222152157 + L1PA3 LINE L1 3519 6155 0 1654 138 0 0 chr3 5373936 5374167 -222150411 - AluJb SINE Alu -9 303 73 230 154 0 0 chr3 5374963 5375002 -222149576 - L2 LINE L2 -10 3262 3224 * 482 316 158 0 chr3 5374969 5375178 -222149400 - MIR SINE MIR -10 252 11 274 309 125 13 chr3 5376397 5376549 -222148029 - MLT1K LTR MaLR -8 580 412 390 253 20 33 chr3 5376602 5376752 -222147826 - L1ME1 LINE L1 -23 6143 5996 1375 246 73 45 chr3 5378229 5378802 -222145776 + L1MB4 LINE L1 4744 5332 -814 10287 199 47 15 chr3 5378802 5381930 -222142648 + L1MA4A LINE L1 2 3437 -3411 5814 142 45 27 chr3 5381955 5384107 -222140471 + L1MA4A LINE L1 4804 7000 -5 3911 185 30 19 chr3 5384097 5384386 -222140192 + L1MB4 LINE L1 5312 5596 -584 * 1691 182 16 0 chr3 5384386 5384693 -222139885 + AluJb SINE Alu 1 312 0 3911 185 30 19 chr3 5384693 5385226 -222139352 + L1MB4 LINE L1 5596 6143 -37 3382 176 16 3 chr3 5385249 5385886 -222138692 + L1MB1 LINE L1 5523 6167 -1 245 286 0 0 chr3 5386238 5386294 -222138284 - MIR SINE MIR -65 143 88 1966 112 13 49 chr3 5386626 5386930 -222137648 + AluSx SINE Alu 4 296 -16 290 235 0 108 chr3 5387044 5387100 -222137478 + MIR SINE MIR 102 144 -118 1620 185 56 3 chr3 5387100 5387424 -222137154 + MER2 DNA MER2_type 2 342 -2 290 235 0 108 chr3 5387424 5387469 -222137109 + MIR SINE MIR 144 192 -70 370 239 92 0 chr3 5388475 5388605 -222135973 - MLT1K LTR MaLR -66 522 381 523 208 104 27 chr3 5390114 5390297 -222134281 - MIR SINE MIR -1 261 65 331 252 22 50 chr3 5390342 5390481 -222134097 + L1ME4a LINE L1 5987 6121 0 429 319 63 95 chr3 5390562 5391101 -222133477 + L2 LINE L2 2294 2806 -508 2307 125 11 6 chr3 5391101 5391454 -222133124 + THE1A LTR MaLR 1 355 0 429 319 63 95 chr3 5391454 5391617 -222132961 + L2 LINE L2 2806 2973 -341 201 363 20 29 chr3 5391669 5391771 -222132807 - L2 LINE L2 0 3272 3172 367 229 28 18 chr3 5391773 5391882 -222132696 - MER81 DNA DNA -1 113 4 25 31 0 0 chr3 5392012 5392044 -222132534 + AT_rich Low_complexity Low_complexity 1 32 0 508 255 21 28 chr3 5392351 5392496 -222132082 + MIR SINE MIR 118 261 -1 205 308 15 0 chr3 5394531 5394596 -222129982 + L2 LINE L2 3248 3313 0 2177 95 64 14 chr3 5396643 5397000 -222127578 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 5397228 5397251 -222127327 + AT_rich Low_complexity Low_complexity 1 23 0 282 56 0 0 chr3 5397815 5397851 -222126727 + (GA)n Simple_repeat Simple_repeat 1 36 0 283 367 69 9 chr3 5398424 5398642 -222125936 + MIR SINE MIR 31 261 -1 240 389 20 20 chr3 5398694 5398843 -222125735 + L3 LINE CR1 1337 1485 -92 426 247 111 82 chr3 5400552 5400795 -222123783 - MIR SINE MIR -9 253 4 191 306 134 15 chr3 5401003 5401137 -222123441 - L3 LINE CR1 -27 1550 1401 406 368 41 59 chr3 5401513 5402005 -222122573 - L3 LINE CR1 -329 1248 766 2576 157 38 14 chr3 5402082 5402579 -222121999 + L1PA16 LINE L1 5654 6162 -4 517 322 102 82 chr3 5402957 5404080 -222120498 - L2 LINE L2 0 3272 2113 183 80 0 0 chr3 5404285 5404310 -222120268 + (TA)n Simple_repeat Simple_repeat 1 25 0 2474 83 0 0 chr3 5404368 5404670 -222119908 - AluSq SINE Alu -11 302 1 268 290 121 16 chr3 5404782 5404906 -222119672 - Charlie8 DNA MER1_type -2161 256 120 1029 122 6 0 chr3 5404947 5405103 -222119475 + L1PA10 LINE L1 6006 6162 -6 435 294 183 11 chr3 5406270 5406450 -222118128 - MIR SINE MIR -26 236 26 291 288 0 12 chr3 5406449 5406529 -222118049 + L2 LINE L2 3231 3309 -4 * 2095 202 52 2 chr3 5407026 5407432 -222117146 + MSTB LTR MaLR 1 426 0 297 173 39 0 chr3 5407643 5407695 -222116883 + L2 LINE L2 3219 3272 0 2236 88 10 3 chr3 5409602 5409896 -222114682 + AluSc SINE Alu 1 296 -13 470 344 14 19 chr3 5409955 5410170 -222114408 - MIR SINE MIR -3 259 46 322 338 25 25 chr3 5410931 5411088 -222113490 - MIR SINE MIR -94 168 12 3883 137 82 0 chr3 5411120 5411769 -222112809 - Tigger3(Golem) DNA MER2_type -1 3027 2318 405 0 0 0 chr3 5411769 5411814 -222112764 + (CA)n Simple_repeat Simple_repeat 2 46 0 3883 137 82 0 chr3 5411814 5411851 -222112727 - Tigger3(Golem) DNA MER2_type -710 2318 2285 551 192 30 0 chr3 5411859 5411958 -222112620 - Tigger3(Golem) DNA MER2_type -2926 103 2 854 140 0 35 chr3 5412237 5412380 -222112198 - FRAM SINE Alu -1 175 38 1236 227 18 21 chr3 5412789 5413075 -222111503 + MER58B DNA MER1_type 48 332 -9 246 287 122 26 chr3 5413115 5413230 -222111348 - MIR SINE MIR -20 242 117 736 243 86 19 chr3 5414099 5414309 -222110269 - MIR SINE MIR 0 262 39 603 235 176 6 chr3 5416542 5416712 -222107866 - MIR SINE MIR -6 256 58 265 277 57 69 chr3 5417655 5417814 -222106764 - L2 LINE L2 -3 3310 3154 524 289 7 0 chr3 5417957 5418106 -222106472 + MER5C DNA MER1_type 7 156 -168 27 0 0 0 chr3 5418108 5418135 -222106443 + AT_rich Low_complexity Low_complexity 1 27 0 381 266 0 18 chr3 5418480 5418589 -222105989 - L1ME1 LINE L1 -5 6161 6055 403 262 157 58 chr3 5418733 5418905 -222105673 - L1ME LINE L1 -5862 208 20 327 216 119 8 chr3 5418911 5419045 -222105533 + MER5C DNA MER1_type 173 321 -3 365 284 155 14 chr3 5419063 5419211 -222105367 + MER5B DNA MER1_type 7 175 -3 789 196 98 12 chr3 5419754 5419927 -222104651 + MER5A DNA MER1_type 1 188 -1 1269 127 0 0 chr3 5420529 5420732 -222103846 - AluSg/x SINE Alu 0 312 120 253 119 0 0 chr3 5420732 5420771 -222103807 - Alu SINE Alu -266 36 2 1691 177 3 20 chr3 5421760 5422059 -222102519 + AluJb SINE Alu 1 294 -18 1515 232 85 0 chr3 5422245 5422585 -222101993 - Cheshire DNA MER1_type -2051 369 1 1055 249 69 54 chr3 5422587 5423108 -222101470 - L1ME1 LINE L1 -2020 5788 5260 277 303 11 22 chr3 5423126 5423215 -222101363 + L2 LINE L2 3190 3277 -36 421 315 66 39 chr3 5423239 5423525 -222101053 - L1ME1 LINE L1 -913 5233 4940 301 87 0 0 chr3 5423788 5423834 -222100744 - L1MB7 LINE L1 -9 6175 6130 232 191 24 0 chr3 5423900 5423942 -222100636 - L1 LINE L1 -2029 4117 4075 249 330 9 9 chr3 5424618 5424724 -222099854 - MIR SINE MIR -4 258 153 215 292 246 8 chr3 5424742 5424872 -222099706 + MIR SINE MIR 15 175 -87 255 350 131 0 chr3 5424974 5425111 -222099467 - MIR SINE MIR -94 168 14 2488 167 24 17 chr3 5425111 5425572 -222099006 - MLT1C LTR MaLR 0 467 4 21 0 0 0 chr3 5425623 5425644 -222098934 + AT_rich Low_complexity Low_complexity 1 21 0 2906 109 17 45 chr3 5425644 5426110 -222098468 - LTR46 LTR ERV1 -7 453 1 346 282 53 23 chr3 5426133 5426264 -222098314 - MIR SINE MIR -21 241 107 190 340 92 13 chr3 5426546 5426699 -222097879 - L2 LINE L2 -410 2904 2740 703 34 0 0 chr3 5429573 5429661 -222094917 - L1PA3 LINE L1 -1 6154 6067 184 382 6 77 chr3 5430056 5430226 -222094352 + MIR3 SINE MIR 40 197 -11 180 349 0 48 chr3 5430268 5430351 -222094227 + L3 LINE CR1 1488 1566 -11 468 282 75 21 chr3 5431072 5431260 -222093318 - MIR SINE MIR -16 246 49 1433 221 86 45 chr3 5431288 5431732 -222092846 - MLT1C LTR MaLR 0 467 6 196 260 0 65 chr3 5432654 5432731 -222091847 - MIR SINE MIR -83 179 108 192 162 108 0 chr3 5433883 5433920 -222090658 - L2 LINE L2 -75 3238 3198 2401 56 0 3 chr3 5434169 5434471 -222090107 - AluY SINE Alu -10 301 1 2317 70 3 6 chr3 5434577 5434916 -222089662 + AluY SINE Alu 1 338 0 240 347 53 0 chr3 5434930 5435005 -222089573 - L2 LINE L2 -60 3212 3134 193 250 0 23 chr3 5435671 5435715 -222088863 + L2 LINE L2 3214 3256 -16 242 321 19 25 chr3 5435995 5436154 -222088424 - L1ME4a LINE L1 -165 5956 5799 193 242 65 16 chr3 5436555 5436617 -222087961 + L3b LINE CR1 1401 1465 -118 350 289 65 20 chr3 5436836 5437037 -222087541 - L1ME4a LINE L1 -1321 4825 4616 661 260 115 40 chr3 5437351 5437647 -222086931 - L1ME1 LINE L1 -9 6393 6076 520 142 150 0 chr3 5437650 5437770 -222086808 + L1ME LINE L1 5574 5711 -455 * 3249 238 74 3 chr3 5437764 5438696 -222085882 - L1ME1 LINE L1 -1198 5184 4187 * 12183 178 78 9 chr3 5438694 5441642 -222082936 - L1ME1 LINE L1 -3207 3175 5 459 314 66 43 chr3 5441737 5442040 -222082538 + L1ME LINE L1 5494 5803 -318 205 191 16 48 chr3 5442153 5442216 -222082362 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 273 362 58 31 chr3 5442353 5442577 -222082001 - MIR SINE MIR 0 262 33 336 292 149 30 chr3 5444019 5444187 -222080391 - MIR3 SINE MIR -18 190 3 318 340 32 26 chr3 5444387 5444543 -222080035 - MIR3 SINE MIR -19 189 33 22 56 0 0 chr3 5445502 5445538 -222079040 + AT_rich Low_complexity Low_complexity 1 36 0 362 330 58 19 chr3 5446322 5446528 -222078050 + MLT1H LTR MaLR 40 253 -296 187 275 288 0 chr3 5446756 5446836 -222077742 + L2 LINE L2 3162 3264 -8 390 195 121 10 chr3 5446995 5447143 -222077435 - MER20 DNA MER1_type 0 219 1 401 309 46 29 chr3 5447709 5447884 -222076694 + MER5B DNA MER1_type 1 178 0 502 331 89 15 chr3 5447884 5448227 -222076351 + L2 LINE L2 2698 3062 -251 810 128 3 1 chr3 5448230 5448360 -222076218 - L1PA10 LINE L1 -637 5531 5397 4649 81 3 3 chr3 5448360 5448985 -222075593 + L1PA10 LINE L1 5541 6168 0 810 128 3 1 chr3 5448985 5448998 -222075580 - L1P4 LINE L1 -771 5397 5386 461 256 105 42 chr3 5449003 5449194 -222075384 + L2 LINE L2 3105 3307 -6 270 298 158 25 chr3 5449236 5449394 -222075184 - MIR SINE MIR -37 225 47 258 337 101 22 chr3 5449461 5449639 -222074939 + MIR3 SINE MIR 3 194 -14 411 320 130 8 chr3 5449652 5449905 -222074673 + L3 LINE CR1 1288 1571 -6 1209 267 73 9 chr3 5451093 5451434 -222073144 - MLT1E2 LTR MaLR 0 626 264 201 161 0 0 chr3 5452024 5452055 -222072523 + (TATATG)n Simple_repeat Simple_repeat 1 31 0 432 0 0 0 chr3 5452190 5452238 -222072340 + (CA)n Simple_repeat Simple_repeat 2 49 0 554 210 8 8 chr3 5452736 5452855 -222071723 - MLT1D LTR MaLR -65 440 322 1158 206 86 0 chr3 5453288 5453555 -222071023 - ERVL-B1 LTR ERVL -4785 979 690 1987 235 38 8 chr3 5453726 5454352 -222070226 - ERVL-B1 LTR ERVL -5030 624 1 267 109 0 43 chr3 5454356 5454402 -222070176 - MLT2B1 LTR ERVL -4 516 473 289 365 0 0 chr3 5454423 5454508 -222070070 - MIR SINE MIR -62 146 62 351 313 41 27 chr3 5455551 5455698 -222068880 + MIR SINE MIR 96 244 -18 2523 71 0 0 chr3 5455739 5456049 -222068529 - AluY SINE Alu -1 310 1 426 176 88 0 chr3 5456127 5456218 -222068360 + L2 LINE L2 3170 3268 -4 266 293 91 10 chr3 5456224 5456323 -222068255 + MIR SINE MIR 86 192 -70 4781 163 30 5 chr3 5457098 5458136 -222066442 - L1PA16 LINE L1 -3 6163 5102 835 192 123 78 chr3 5458666 5458810 -222065768 + MLT1A1 LTR MaLR 1 137 -228 2293 116 0 3 chr3 5458810 5459113 -222065465 + AluSg SINE Alu 1 302 -8 835 192 123 78 chr3 5459113 5459301 -222065277 + MLT1A1 LTR MaLR 137 348 -17 2657 158 16 28 chr3 5459361 5459862 -222064716 + Tigger1 DNA MER2_type 5 499 -1919 * 9960 138 29 1 chr3 5459860 5461534 -222063044 + Tigger1 DNA MER2_type 694 2414 -4 555 274 27 43 chr3 5461820 5462006 -222062572 + MER5A DNA MER1_type 7 189 0 653 194 47 29 chr3 5462013 5462183 -222062395 + MER5B DNA MER1_type 6 178 0 256 349 113 5 chr3 5462332 5462544 -222062034 + L2 LINE L2 3079 3313 0 536 262 0 0 chr3 5463565 5463706 -222060872 - L1MA10 LINE L1 -4 6330 6190 21 0 0 0 chr3 5464128 5464149 -222060429 + AT_rich Low_complexity Low_complexity 1 21 0 6158 129 83 24 chr3 5464206 5465368 -222059210 - Tigger3b DNA MER2_type 0 1231 1 542 215 18 6 chr3 5465710 5465867 -222058711 + L1M2 LINE L1 5468 5630 -536 189 0 0 0 chr3 5465969 5465990 -222058588 + (TATG)n Simple_repeat Simple_repeat 4 24 0 232 338 59 0 chr3 5466167 5466235 -222058343 + L2 LINE L2 3201 3272 0 309 248 88 40 chr3 5466488 5466613 -222057965 + L1ME LINE L1 5597 5727 -394 419 215 15 0 chr3 5468037 5468143 -222056435 + MER5A DNA MER1_type 4 111 -78 233 321 73 22 chr3 5468438 5468575 -222056003 - MIR SINE MIR -67 195 52 1776 230 113 33 chr3 5468669 5469247 -222055331 - MLT1E2 LTR MaLR 0 626 3 206 103 0 26 chr3 5470330 5470369 -222054209 + (GA)n Simple_repeat Simple_repeat 1 38 0 229 271 42 93 chr3 5471142 5471260 -222053318 - L2 LINE L2 -16 3256 3145 237 263 0 0 chr3 5471361 5471418 -222053160 - L2 LINE L2 -12 3260 3204 601 286 49 16 chr3 5471807 5471992 -222052586 - MIR SINE MIR -61 201 11 230 250 43 43 chr3 5472780 5472872 -222051706 + MIR SINE MIR 96 187 -75 183 283 54 22 chr3 5474179 5474271 -222050307 + MIR SINE MIR 168 262 0 330 303 189 0 chr3 5476527 5476659 -222047919 + MIR SINE MIR 98 254 -8 2561 52 0 0 chr3 5478601 5478909 -222045669 + AluY SINE Alu 1 308 -3 187 304 104 55 chr3 5478928 5479129 -222045449 + MIR3 SINE MIR 2 217 -45 274 299 28 9 chr3 5479450 5479557 -222045021 + MIR3 SINE MIR 90 198 -10 594 220 0 38 chr3 5479598 5479730 -222044848 + MIR3 SINE MIR 71 197 -11 1889 174 17 6 chr3 5479743 5480088 -222044490 + MER93b LTR ERV1 1 349 -24 7048 132 14 18 chr3 5480938 5483041 -222041537 + L1PA13 LINE L1 4052 6139 -24 3119 221 59 9 chr3 5483217 5484490 -222040088 - L1MB7 LINE L1 0 6184 4844 1077 168 16 16 chr3 5484503 5484693 -222039885 - AluJo SINE Alu -11 301 112 956 285 0 12 chr3 5484693 5484939 -222039639 + MIR SINE MIR 3 245 -17 3227 160 22 2 chr3 5485252 5485791 -222038787 + MER44D DNA MER2_type 1 605 0 286 332 103 23 chr3 5486074 5486288 -222038290 - MIR SINE MIR -2 260 30 1395 187 28 0 chr3 5486423 5486707 -222037871 + L1MA4A LINE L1 6001 6292 -11 2333 35 11 0 chr3 5487242 5487529 -222037049 + AluY SINE Alu 1 290 -21 549 80 0 0 chr3 5487544 5487619 -222036959 + (TG)n Simple_repeat Simple_repeat 2 76 0 294 257 109 0 chr3 5487672 5487773 -222036805 - MER103 DNA DNA -46 120 9 455 221 174 35 chr3 5487912 5488084 -222036494 + MER58C DNA MER1_type 1 196 -19 427 288 56 30 chr3 5488297 5488495 -222036083 - L3 LINE CR1 -332 1245 1043 1509 126 16 0 chr3 5488598 5488852 -222035726 - Tigger2 DNA MER2_type 0 2718 2461 3745 150 50 17 chr3 5488918 5489636 -222034942 - Tigger2 DNA MER2_type -1974 744 3 314 284 21 100 chr3 5489700 5489890 -222034688 + MER102a DNA MER1_type 152 326 -4 307 354 0 15 chr3 5490166 5490296 -222034282 + MIR3 SINE MIR 12 139 -69 218 268 0 18 chr3 5491515 5491571 -222033007 + MIR3 SINE MIR 131 185 -23 306 323 144 20 chr3 5491926 5492121 -222032457 - MIR SINE MIR -4 258 40 1605 176 3 24 chr3 5492851 5493181 -222031397 + AluJo SINE Alu 1 324 0 248 292 0 4 chr3 5493839 5493921 -222030657 - MLT1H LTR MaLR -2 550 474 675 234 61 61 chr3 5494019 5494280 -222030298 - MLT1H LTR MaLR -249 300 40 315 0 0 0 chr3 5494306 5494341 -222030237 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 336 102 0 0 chr3 5494340 5494389 -222030189 + (CA)n Simple_repeat Simple_repeat 1 49 0 1315 303 47 45 chr3 5494407 5494935 -222029643 + MLT1K LTR MaLR 23 551 -37 195 42 0 0 chr3 5495063 5495087 -222029491 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr3 5495974 5496005 -222028573 + (TG)n Simple_repeat Simple_repeat 2 32 0 480 320 100 42 chr3 5496548 5496929 -222027649 - L2 LINE L2 -41 3231 2829 195 222 48 63 chr3 5497284 5497347 -222027231 + L2 LINE L2 3252 3313 0 3659 134 11 0 chr3 5497833 5498354 -222026224 + MER1A DNA MER1_type 1 527 -2 21 36 0 0 chr3 5498521 5498549 -222026029 + AT_rich Low_complexity Low_complexity 1 28 0 3429 168 26 22 chr3 5498737 5499358 -222025220 + L1MB5 LINE L1 5539 6161 -13 23 0 0 0 chr3 5499365 5499388 -222025190 + AT_rich Low_complexity Low_complexity 1 23 0 472 285 58 7 chr3 5499864 5500001 -222024577 - MIR SINE MIR -91 171 28 390 321 45 0 chr3 5500500 5500634 -222023944 + L2 LINE L2 3133 3272 0 417 291 71 0 chr3 5500832 5500959 -222023619 - L2 LINE L2 0 3272 3137 674 332 43 8 chr3 5502244 5502479 -222022099 + MIR SINE MIR 20 262 0 376 278 93 0 chr3 5502621 5502729 -222021849 - MIR3 SINE MIR 0 208 91 369 0 0 0 chr3 5503457 5503498 -222021080 + (T)n Simple_repeat Simple_repeat 1 41 0 328 264 60 39 chr3 5505057 5505239 -222019339 + MIR SINE MIR 77 262 0 254 306 83 0 chr3 5505982 5506090 -222018488 + MIR SINE MIR 73 189 -73 1907 202 58 32 chr3 5506387 5506818 -222017760 + MER74B LTR ERVL 55 496 -126 3951 147 31 38 chr3 5506821 5507537 -222017041 + MER50 LTR ERV1 1 711 -23 785 142 24 8 chr3 5507543 5507670 -222016908 + MER74B LTR ERVL 491 619 -3 29 28 0 0 chr3 5508109 5508145 -222016433 + AT_rich Low_complexity Low_complexity 1 36 0 540 309 124 0 chr3 5508728 5508945 -222015633 + MIR SINE MIR 16 259 -3 188 347 97 35 chr3 5509683 5509713 -222014865 - MER5B DNA MER1_type -1 177 150 1032 62 0 0 chr3 5509713 5509858 -222014720 + (CAT)n Simple_repeat Simple_repeat 1 145 0 553 217 35 0 chr3 5509858 5509973 -222014605 + MER5A DNA MER1_type 49 167 -22 709 297 122 30 chr3 5510843 5511318 -222013260 + L2 LINE L2 2763 3313 0 442 240 68 48 chr3 5511839 5511986 -222012592 + MIR3 SINE MIR 15 168 -63 301 231 106 48 chr3 5512052 5512156 -222012422 - MIR SINE MIR -131 131 22 217 243 63 12 chr3 5512567 5512652 -222011926 + MIR SINE MIR 70 154 -66 392 246 111 8 chr3 5512816 5512942 -222011636 + LTR16C LTR ERVL 353 491 0 2116 178 117 42 chr3 5512974 5513578 -222011000 + MLT1E2 LTR MaLR 1 626 0 256 100 80 0 chr3 5513712 5513762 -222010816 - L1MA9 LINE L1 -38 6274 6221 4488 176 49 59 chr3 5513798 5514845 -222009733 - L1MA9 LINE L1 -38 6274 5211 294 281 65 51 chr3 5515647 5515812 -222008766 - MIR3 SINE MIR -8 200 34 667 282 29 67 chr3 5515885 5516229 -222008349 + L2 LINE L2 2641 2971 -343 597 260 25 69 chr3 5516265 5516416 -222008162 + L2 LINE L2 3119 3260 -53 1645 145 0 11 chr3 5516416 5516678 -222007900 + AluJo SINE Alu 51 309 -3 597 260 25 69 chr3 5516678 5516730 -222007848 + L2 LINE L2 3260 3313 0 404 294 9 9 chr3 5517997 5518106 -222006472 - MIR SINE MIR 0 262 154 666 303 0 15 chr3 5518131 5518329 -222006249 + MIR SINE MIR 19 213 -49 1432 267 75 50 chr3 5518480 5519082 -222005496 - MER21B LTR ERV1 -149 714 98 2585 23 3 10 chr3 5519217 5519516 -222005062 - AluY SINE Alu -14 297 1 210 259 134 9 chr3 5519792 5519904 -222004674 - MIR3 SINE MIR -5 203 78 21 36 0 0 chr3 5520591 5520619 -222003959 + AT_rich Low_complexity Low_complexity 1 28 0 778 250 81 21 chr3 5521042 5521278 -222003300 + MIR SINE MIR 2 251 -11 298 189 0 0 chr3 5522020 5522073 -222002505 - MLT1K LTR MaLR -11 577 525 5842 157 22 24 chr3 5522075 5523152 -222001426 + L1MA9 LINE L1 5237 6312 0 653 270 76 45 chr3 5523157 5523512 -222001066 - MLT1K LTR MaLR -53 535 170 216 270 16 32 chr3 5524014 5524077 -222000501 - L2 LINE L2 0 3313 3252 312 288 135 24 chr3 5524670 5524840 -221999738 + LTR16A LTR ERVL 260 448 -2 296 243 71 48 chr3 5525064 5525206 -221999372 - L2 LINE L2 -4 3268 3011 1729 206 116 12 chr3 5525285 5525708 -221998870 - MLT1C LTR MaLR 0 467 1 218 284 65 110 chr3 5525748 5525903 -221998675 + MIR SINE MIR 10 157 -105 869 296 33 36 chr3 5525944 5526275 -221998303 + MLT1I LTR MaLR 80 409 0 333 318 9 0 chr3 5526276 5526383 -221998195 + MIR SINE MIR 154 261 -1 912 231 62 5 chr3 5526507 5526715 -221997863 - MIR SINE MIR -10 252 33 2579 139 10 5 chr3 5527365 5527753 -221996825 - MLT1B LTR MaLR 0 390 1 255 214 121 79 chr3 5528067 5528207 -221996371 - MIR SINE MIR -51 211 66 1715 126 4 12 chr3 5528217 5528472 -221996106 - AluJb SINE Alu -43 269 17 21 0 0 0 chr3 5528519 5528540 -221996038 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 5529213 5529248 -221995330 + AT_rich Low_complexity Low_complexity 1 35 0 500 297 106 29 chr3 5529323 5529512 -221995066 - L1ME4a LINE L1 -216 5905 5732 2109 100 7 0 chr3 5529512 5529821 -221994757 + AluSx SINE Alu 1 311 0 500 297 106 29 chr3 5529821 5529970 -221994608 - L1ME4a LINE L1 -389 5732 5540 6796 90 17 0 chr3 5530160 5531224 -221993354 - L1PA12 LINE L1 0 6168 5104 206 273 0 0 chr3 5532582 5532626 -221991952 - L2 LINE L2 -7 3306 3263 * 220 314 119 22 chr3 5532593 5532778 -221991800 - MIR SINE MIR -12 250 48 1500 133 0 0 chr3 5533116 5533341 -221991237 - L1P LINE L1 -1032 5114 4890 347 265 71 0 chr3 5533969 5534067 -221990511 - MIR3 SINE MIR -23 185 81 272 195 13 39 chr3 5534325 5534402 -221990176 + T-rich Low_complexity Low_complexity 4 78 0 2784 229 21 57 chr3 5534656 5535373 -221989205 - LTR8 LTR ERV1 0 691 1 439 244 15 69 chr3 5535686 5535817 -221988761 + MIR SINE MIR 47 170 -92 574 255 16 10 chr3 5536071 5536250 -221988328 - MLT1C LTR MaLR 0 467 323 508 62 0 0 chr3 5536259 5536323 -221988255 - MADE1 DNA Mariner 0 80 17 1894 199 26 46 chr3 5536325 5536783 -221987795 + LTR2 LTR ERV1 1 449 0 987 196 49 85 chr3 5536798 5537104 -221987474 - MLT1C LTR MaLR -172 295 1 189 49 24 49 chr3 5537148 5537189 -221987389 + (TTATA)n Simple_repeat Simple_repeat 3 42 0 1557 239 59 11 chr3 5537312 5537684 -221986894 - MLT1B LTR MaLR 0 390 1 271 270 36 36 chr3 5538701 5538812 -221985766 - L2 LINE L2 0 3313 3203 304 197 53 92 chr3 5540006 5540158 -221984420 - L1MC5 LINE L1 -166 7795 7650 267 337 163 0 chr3 5540224 5540390 -221984188 + MIR SINE MIR 69 261 -1 746 312 69 52 chr3 5540469 5540930 -221983648 + L2 LINE L2 1894 2362 -952 1416 279 22 16 chr3 5541052 5541421 -221983157 - MLT1G1 LTR MaLR -209 386 16 654 309 94 62 chr3 5541421 5542211 -221982367 + L2 LINE L2 2348 3170 -143 2947 204 65 24 chr3 5542211 5542837 -221981741 + MER82 DNA MER2_type 1 652 -1 654 309 94 62 chr3 5542837 5542936 -221981642 + L2 LINE L2 3170 3264 -49 2193 128 0 0 chr3 5543126 5543423 -221981155 + AluSx SINE Alu 6 302 -10 255 133 0 0 chr3 5545187 5545232 -221979346 + (CA)n Simple_repeat Simple_repeat 1 45 0 2505 134 59 20 chr3 5545566 5545975 -221978603 - MSTA LTR MaLR 0 428 4 918 236 90 55 chr3 5546026 5546369 -221978209 + LTR16C LTR ERVL 17 371 -120 1501 225 35 52 chr3 5546389 5546793 -221977785 - MER21B LTR ERV1 -107 756 360 1238 190 0 5 chr3 5546831 5547047 -221977531 + AluJo SINE Alu 84 298 -14 534 172 57 146 chr3 5547098 5547290 -221977288 - MER21B LTR ERV1 -676 187 13 439 195 80 9 chr3 5547306 5547419 -221977159 + LTR16C LTR ERVL 371 491 0 2483 63 0 3 chr3 5549306 5549627 -221974951 + AluY SINE Alu 11 330 0 2194 144 57 36 chr3 5549733 5550121 -221974457 - MSTD LTR MaLR 0 396 1 311 254 9 118 chr3 5550712 5550822 -221973756 + MER81 DNA DNA 1 98 -16 248 265 81 37 chr3 5550927 5551063 -221973515 + MER20B DNA MER1_type 495 636 -147 272 187 53 67 chr3 5553309 5553384 -221971194 + MIR SINE MIR 31 104 -104 1252 198 108 35 chr3 5553392 5553440 -221971138 - MLT2B1 LTR ERVL 0 414 371 2730 96 19 16 chr3 5553440 5553803 -221970775 + THE1B LTR MaLR 1 364 0 1252 198 108 35 chr3 5553803 5554184 -221970394 - MLT2B1 LTR ERVL -43 371 1 1942 141 18 0 chr3 5554279 5554563 -221970015 - AluSx SINE Alu -15 297 9 1311 219 15 8 chr3 5554563 5554828 -221969750 - MLT1H LTR MaLR -275 274 8 245 268 18 0 chr3 5555152 5555208 -221969370 - MER102b DNA MER1_type 0 330 274 1814 193 0 0 chr3 5555318 5555613 -221968965 + AluJo SINE Alu 1 295 -17 661 194 12 0 chr3 5555624 5555784 -221968794 + GA-rich Low_complexity Low_complexity 1 162 0 299 348 17 8 chr3 5555857 5555975 -221968603 - MIR3 SINE MIR -49 159 41 795 183 0 0 chr3 5556958 5557078 -221967500 + FLAM_A SINE Alu 1 120 -13 286 226 250 32 chr3 5557512 5557636 -221966942 + MIR3 SINE MIR 33 183 -25 437 259 64 64 chr3 5557692 5557958 -221966620 - L2 LINE L2 -1 3312 3047 231 250 0 0 chr3 5558001 5558049 -221966529 + MIR SINE MIR 69 116 -92 921 241 0 5 chr3 5558053 5558244 -221966334 - MLT1D LTR MaLR 0 505 316 1132 246 113 19 chr3 5558362 5558732 -221965846 - MLT1E2 LTR MaLR -221 405 1 2647 24 0 0 chr3 5558841 5559138 -221965440 - AluYb8 SINE Alu -3 315 19 1971 139 85 20 chr3 5559249 5559601 -221964977 - THE1C LTR MaLR 0 375 1 443 275 126 33 chr3 5560490 5560672 -221963906 + MIR SINE MIR 58 256 -6 369 319 35 0 chr3 5560809 5560922 -221963656 + L2 LINE L2 3155 3271 -1 8225 22 0 0 chr3 5561127 5562592 -221961986 - L1PA2 LINE L1 0 6155 4691 14488 37 1 3 chr3 5562592 5564337 -221960241 + L1PA2 LINE L1 2961 4702 -1444 627 242 56 25 chr3 5564341 5564502 -221960076 - MIR SINE MIR -73 189 24 189 0 0 0 chr3 5564519 5564540 -221960038 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 773 233 41 116 chr3 5565437 5565781 -221958797 + MER102b DNA MER1_type 2 319 -22 219 293 89 57 chr3 5565781 5565904 -221958674 - MIR3 SINE MIR -54 154 28 345 317 0 0 chr3 5566042 5566124 -221958454 - L2 LINE L2 0 3313 3232 322 293 95 0 chr3 5566262 5566378 -221958200 - MIR SINE MIR -71 191 65 323 263 61 44 chr3 5566508 5566622 -221957956 + MIR3 SINE MIR 47 162 -46 4526 28 4 0 chr3 5567641 5568143 -221956435 - L1PA4 LINE L1 -1 6154 5651 246 289 33 22 chr3 5568946 5569036 -221955542 - MER94 DNA DNA 0 134 44 1272 169 132 33 chr3 5569090 5569362 -221955216 - AluJb SINE Alu -13 299 1 22 0 0 0 chr3 5569809 5569831 -221954747 + AT_rich Low_complexity Low_complexity 1 22 0 3633 201 49 27 chr3 5570054 5570556 -221954022 + L1MB7 LINE L1 5227 5760 -424 1678 141 11 67 chr3 5570556 5570691 -221953887 + AluJb SINE Alu 11 123 -189 2312 91 7 0 chr3 5570691 5570987 -221953591 + AluY SINE Alu 1 298 -13 1678 141 11 67 chr3 5570987 5571135 -221953443 + AluJb SINE Alu 123 278 -34 3633 201 49 27 chr3 5571135 5571532 -221953046 + L1MB7 LINE L1 5760 6147 -37 1227 126 0 6 chr3 5571537 5571704 -221952874 + AluSg/x SINE Alu 131 296 -16 283 87 22 0 chr3 5571706 5571752 -221952826 + L1MB8 LINE L1 6132 6178 0 425 289 0 18 chr3 5571962 5572076 -221952502 + MIR SINE MIR 36 147 -61 1861 168 3 0 chr3 5572440 5572731 -221951847 + AluJb SINE Alu 1 292 -20 2126 135 0 0 chr3 5572741 5573037 -221951541 + AluSg SINE Alu 1 296 -14 671 183 56 7 chr3 5573795 5573937 -221950641 + MER20 DNA MER1_type 6 154 -65 * 1277 215 93 31 chr3 5573930 5574284 -221950294 - LTR52 LTR ERVL -42 379 4 441 195 12 0 chr3 5574286 5574368 -221950210 + MER20 DNA MER1_type 137 219 0 1030 258 28 60 chr3 5574505 5574858 -221949720 + LTR16A LTR ERVL 103 444 -6 432 204 60 156 chr3 5574860 5575129 -221949449 + MER112 DNA MER1_type 18 260 0 387 292 71 60 chr3 5575759 5575927 -221948651 - MIR3 SINE MIR -22 186 17 256 336 68 20 chr3 5576833 5576979 -221947599 + MIR3 SINE MIR 34 186 -22 390 265 121 8 chr3 5577256 5577388 -221947190 + MIR SINE MIR 104 250 -12 183 42 0 0 chr3 5577403 5577427 -221947151 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5045 139 49 14 chr3 5577524 5578397 -221946181 - MER4D LTR ERV1 -2 869 1 2587 110 11 8 chr3 5578411 5578765 -221945813 + THE1A LTR MaLR 1 355 0 226 351 85 0 chr3 5579296 5579390 -221945188 - L2 LINE L2 -2 3270 3169 213 239 0 22 chr3 5579460 5579506 -221945072 - L2 LINE L2 -18 3254 3210 682 279 181 85 chr3 5579525 5580489 -221944089 - L3 LINE CR1 -90 1487 431 216 0 0 0 chr3 5582333 5582357 -221942221 + (TA)n Simple_repeat Simple_repeat 2 25 0 192 97 0 0 chr3 5584568 5584599 -221939979 + (CA)n Simple_repeat Simple_repeat 1 31 0 431 143 0 39 chr3 5584772 5584849 -221939729 + AluY SINE Alu 208 281 -30 452 308 104 11 chr3 5585749 5586009 -221938569 - L2 LINE L2 0 3313 3030 269 238 179 12 chr3 5586635 5586719 -221937859 - MER5A DNA MER1_type -83 106 9 550 250 57 6 chr3 5586735 5586910 -221937668 - Charlie2 DNA MER1_type 0 2862 2679 1208 205 8 63 chr3 5586910 5587290 -221937288 - THE1C LTR MaLR 0 375 17 1043 141 29 0 chr3 5587459 5587629 -221936949 - MLT1C LTR MaLR -285 182 8 1692 76 5 0 chr3 5587689 5587899 -221936679 + AluY SINE Alu 86 296 -15 12183 120 19 44 chr3 5587923 5588067 -221936511 + Tigger1 DNA MER2_type 1 147 -2271 1194 107 60 0 chr3 5588067 5588235 -221936343 - L1PB3 LINE L1 -1 6153 5976 12183 120 19 44 chr3 5588235 5588829 -221935749 + Tigger1 DNA MER2_type 147 755 -1663 2076 123 23 13 chr3 5588829 5589101 -221935477 + AluSq SINE Alu 1 278 -35 1113 71 24 0 chr3 5589101 5589269 -221935309 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 2076 123 23 13 chr3 5589269 5589306 -221935272 + AluSq SINE Alu 278 313 0 12183 120 19 44 chr3 5589306 5590551 -221934027 + Tigger1 DNA MER2_type 755 1934 -484 2387 150 20 93 chr3 5590551 5591044 -221933534 - LTR32 LTR ERVL 0 471 15 3196 140 10 6 chr3 5591044 5591530 -221933048 + Tigger1 DNA MER2_type 1930 2417 -1 435 274 42 53 chr3 5591630 5591820 -221932758 - MIR SINE MIR -36 226 39 299 452 25 0 chr3 5592013 5592170 -221932408 - L2 LINE L2 -12 3260 3100 * 616 292 31 5 chr3 5592168 5592360 -221932218 - MIR SINE MIR -1 261 65 343 304 9 9 chr3 5592563 5592678 -221931900 + MIR SINE MIR 137 251 -11 240 289 22 44 chr3 5592974 5593064 -221931514 + L3 LINE CR1 1488 1575 -2 466 305 72 6 chr3 5594346 5594513 -221930065 + MIR SINE MIR 37 214 -48 859 73 47 80 chr3 5595113 5595128 -221929450 + L1MA5A LINE L1 6153 6167 -130 1996 148 40 35 chr3 5595128 5595501 -221929077 + THE1C LTR MaLR 1 375 0 859 73 47 80 chr3 5595501 5595609 -221928969 + L1MA5A LINE L1 6167 6273 -24 495 105 53 0 chr3 5595609 5595635 -221928943 + MADE1 DNA Mariner 1 24 -56 2284 88 19 10 chr3 5595635 5595943 -221928635 - AluY SINE Alu 0 311 1 495 105 53 0 chr3 5595943 5595992 -221928586 + MADE1 DNA Mariner 24 80 0 859 73 47 80 chr3 5595992 5596017 -221928561 + L1MA5A LINE L1 6273 6297 0 1264 195 20 28 chr3 5596731 5597062 -221927516 - MLT2B3 LTR ERVL 0 554 231 1539 155 39 0 chr3 5597074 5597332 -221927246 - MLT2A2 LTR ERVL -185 268 1 832 287 108 25 chr3 5597426 5597740 -221926838 + MER102b DNA MER1_type 2 341 0 205 288 82 0 chr3 5597842 5597915 -221926663 + L2 LINE L2 3235 3313 0 239 281 67 11 chr3 5597923 5598012 -221926566 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 5599240 5599431 -221925147 - MIR SINE MIR -43 219 18 321 272 25 0 chr3 5599542 5599623 -221924955 - MER81 DNA DNA -5 109 27 280 184 0 20 chr3 5599646 5599695 -221924883 - MER81 DNA DNA -66 48 1 2554 124 5 22 chr3 5599874 5600244 -221924334 + THE1B LTR MaLR 1 364 0 335 320 49 0 chr3 5600502 5600624 -221923954 - MIR SINE MIR -32 230 103 405 263 75 0 chr3 5601551 5601684 -221922894 + LTR67 LTR ERVL 403 545 -12 1748 182 0 10 chr3 5601737 5602045 -221922533 - AluSx SINE Alu -7 305 1 181 263 288 12 chr3 5602131 5602211 -221922367 - MIR SINE MIR -63 145 44 2365 76 0 22 chr3 5602302 5602619 -221921959 + AluY SINE Alu 1 310 -1 321 318 77 43 chr3 5602955 5603188 -221921390 + MIR SINE MIR 5 245 -17 468 193 0 0 chr3 5603750 5603859 -221920719 + (TA)n Simple_repeat Simple_repeat 2 110 0 314 192 0 26 chr3 5603936 5604014 -221920564 + (CATA)n Simple_repeat Simple_repeat 2 77 0 261 276 35 0 chr3 5604014 5604101 -221920477 + L1MC4 LINE L1 6614 6703 -1339 231 272 0 22 chr3 5604093 5604185 -221920393 - L1MC4 LINE L1 -1339 6703 6614 * 357 208 0 0 chr3 5604186 5604263 -221920315 + (TA)n Simple_repeat Simple_repeat 1 77 0 316 283 0 22 chr3 5604263 5604355 -221920223 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3 5604365 5604451 -221920127 - L1MC4 LINE L1 -1339 6703 6614 435 211 0 0 chr3 5604452 5604547 -221920031 + (TA)n Simple_repeat Simple_repeat 2 96 0 229 261 0 22 chr3 5604547 5604639 -221919939 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 5604640 5604696 -221919882 + (TA)n Simple_repeat Simple_repeat 1 56 0 1883 128 25 4 chr3 5605182 5605456 -221919122 - AluSc SINE Alu -29 280 1 6868 201 60 9 chr3 5606061 5608078 -221916500 + L1MB2 LINE L1 3678 5785 -386 2003 127 43 0 chr3 5608071 5608394 -221916184 - L1P LINE L1 -989 5157 4821 * 2844 67 6 11 chr3 5608394 5608751 -221915827 + L1PA10 LINE L1 5808 6164 -4 198 71 0 0 chr3 5609888 5609916 -221914662 + (CA)n Simple_repeat Simple_repeat 2 29 0 2122 132 90 3 chr3 5609917 5610282 -221914296 + L1MB2 LINE L1 5773 6169 -2 387 209 9 67 chr3 5610921 5610997 -221913581 + MIR SINE MIR 30 100 -162 2036 165 45 8 chr3 5610997 5611349 -221913229 + MER47A DNA MER2_type 2 366 0 387 209 9 67 chr3 5611349 5611377 -221913201 + MIR SINE MIR 100 128 -134 2901 94 20 5 chr3 5611472 5611864 -221912714 + MLT2A1 LTR ERVL 1 398 -46 26 64 0 0 chr3 5611864 5611911 -221912667 + AT_rich Low_complexity Low_complexity 1 47 0 232 154 0 19 chr3 5611911 5611963 -221912615 + LTR66 LTR ERVL 404 454 -156 * 249 62 167 21 chr3 5611933 5611981 -221912597 + MLT2A1 LTR ERVL 399 453 0 44384 65 17 11 chr3 5611981 5614622 -221909956 + HERVL-A1-A1 LTR ERVL 1 2623 -3031 2982 6 0 0 chr3 5614622 5614940 -221909638 - AluYb8 SINE Alu 0 318 1 44384 65 17 11 chr3 5614940 5617914 -221906664 + HERVL-A1-A1 LTR ERVL 2623 5654 0 2656 85 66 33 chr3 5617914 5618309 -221906269 + MLT2A1 LTR ERVL 1 412 -32 248 0 31 0 chr3 5618309 5618341 -221906237 + (TA)n Simple_repeat Simple_repeat 1 33 0 2656 85 66 33 chr3 5618341 5618368 -221906210 + MLT2A1 LTR ERVL 412 437 -7 243 214 71 0 chr3 5618832 5618888 -221905690 - MER101 LTR ERV1 -146 328 269 828 234 100 13 chr3 5619159 5619398 -221905180 + MIR SINE MIR 3 262 0 181 378 41 10 chr3 5619995 5620093 -221904485 + MIR3 SINE MIR 11 111 -97 225 170 64 0 chr3 5620225 5620272 -221904306 + CT-rich Low_complexity Low_complexity 4 53 0 258 198 143 66 chr3 5620428 5620519 -221904059 - Charlie8 DNA MER1_type -2319 98 1 208 191 117 117 chr3 5621519 5621613 -221902965 - MIR3 SINE MIR -15 193 100 585 249 127 5 chr3 5622706 5622911 -221901667 + MIR SINE MIR 20 249 -13 540 239 57 19 chr3 5623079 5623238 -221901340 - MIR SINE MIR -84 178 14 588 311 31 40 chr3 5624211 5624433 -221900145 - MIR SINE MIR -15 247 28 243 294 9 64 chr3 5624506 5624615 -221899963 + L2 LINE L2 3193 3295 -18 579 271 94 10 chr3 5625103 5625295 -221899283 + MER3 DNA MER1_type 2 209 0 317 262 82 47 chr3 5625306 5625463 -221899115 - MER5A DNA MER1_type -10 179 7 190 359 47 0 chr3 5625657 5625721 -221898857 + L2 LINE L2 3186 3252 -20 215 286 16 0 chr3 5626133 5626196 -221898382 + L2 LINE L2 3209 3272 0 189 0 0 0 chr3 5626400 5626421 -221898157 + (CAA)n Simple_repeat Simple_repeat 1 21 0 229 356 59 0 chr3 5626531 5626632 -221897946 + MIR SINE MIR 107 213 -49 2142 148 22 63 chr3 5626709 5627155 -221897423 + MLT1C LTR MaLR 36 463 -4 1754 166 28 7 chr3 5627187 5627476 -221897102 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr3 5628757 5628781 -221895797 + AT_rich Low_complexity Low_complexity 1 24 0 658 191 0 48 chr3 5629399 5629500 -221895078 + MLT2B2 LTR ERVL 376 469 -46 180 0 0 0 chr3 5629500 5629520 -221895058 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 658 191 0 48 chr3 5629520 5629565 -221895013 + MLT2B2 LTR ERVL 469 515 0 355 200 45 3 chr3 5631144 5631262 -221893316 - MER63A DNA MER1_type -37 173 14 373 280 0 51 chr3 5631446 5631529 -221893049 - LTR33 LTR ERVL -7 514 441 1115 208 76 90 chr3 5631529 5631961 -221892617 - MSTC LTR MaLR -2 426 1 373 280 0 51 chr3 5631961 5632034 -221892544 - LTR33 LTR ERVL -80 441 366 527 203 23 30 chr3 5632036 5632169 -221892409 - LTR33 LTR ERVL -389 132 1 258 371 44 46 chr3 5632181 5632569 -221892009 - L2 LINE L2 -558 2756 2370 350 233 56 0 chr3 5632599 5632689 -221891889 + LTR33 LTR ERVL 163 257 -264 258 301 102 18 chr3 5632782 5632948 -221891630 - L2 LINE L2 -1003 2311 2132 189 0 0 0 chr3 5633640 5633661 -221890917 + (T)n Simple_repeat Simple_repeat 1 21 0 548 310 144 53 chr3 5633968 5634384 -221890194 + L2 LINE L2 2857 3310 -3 431 305 147 10 chr3 5634387 5634584 -221889994 - MIR SINE MIR -19 243 20 236 333 66 105 chr3 5634999 5635227 -221889351 - L2 LINE L2 -6 3266 3048 308 242 121 0 chr3 5635254 5635345 -221889233 + MIR SINE MIR 73 174 -88 962 204 0 17 chr3 5635738 5635914 -221888664 - AluJb SINE Alu -3 309 137 204 300 0 0 chr3 5636078 5636128 -221888450 - MIR SINE MIR -14 248 199 417 277 97 35 chr3 5636616 5636808 -221887770 - MIR SINE MIR -12 250 57 2099 122 0 3 chr3 5637031 5637327 -221887251 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 5638010 5638032 -221886546 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 533 296 69 0 chr3 5638057 5638216 -221886362 + MIR SINE MIR 76 245 -17 749 177 62 77 chr3 5640273 5640482 -221884096 - MER20 DNA MER1_type -13 206 1 255 255 0 0 chr3 5640617 5640668 -221883910 + L2 LINE L2 3263 3313 0 210 338 0 26 chr3 5642207 5642284 -221882294 - MIR SINE MIR -55 153 79 22 35 0 0 chr3 5642959 5642988 -221881590 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 12 47 chr3 5646061 5646230 -221878348 + C-rich Low_complexity Low_complexity 5 167 0 231 88 0 0 chr3 5646641 5646675 -221877903 + (GGA)n Simple_repeat Simple_repeat 3 36 0 21 57 0 0 chr3 5647156 5647191 -221877387 + GC_rich Low_complexity Low_complexity 1 35 0 791 243 56 42 chr3 5648701 5648915 -221875663 + MIR SINE MIR 28 244 -18 207 0 0 0 chr3 5650265 5650288 -221874290 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 447 283 9 9 chr3 5650386 5650492 -221874086 - MER81 DNA DNA 0 114 9 2755 105 11 3 chr3 5650653 5651014 -221873564 - THE1B LTR MaLR 0 364 1 271 236 0 18 chr3 5651015 5651070 -221873508 - MIR3 SINE MIR -46 162 109 358 192 0 14 chr3 5651237 5651310 -221873268 - L1ME4a LINE L1 -249 5872 5801 22 0 0 0 chr3 5651497 5651519 -221873059 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 62 0 chr3 5651698 5651811 -221872767 + MIR SINE MIR 1 120 -142 425 152 0 0 chr3 5651859 5651925 -221872653 + L1PA16 LINE L1 6095 6160 -6 4403 152 19 32 chr3 5651934 5652083 -221872495 + L1MB3 LINE L1 5386 5536 -647 2625 112 67 45 chr3 5652083 5652502 -221872076 + MSTA LTR MaLR 1 428 0 4403 152 19 32 chr3 5652502 5652772 -221871806 + L1MB3 LINE L1 5536 5808 -375 2506 111 36 30 chr3 5652772 5653134 -221871444 - THE1B LTR MaLR 0 364 1 4403 152 19 32 chr3 5653134 5653522 -221871056 + L1MB3 LINE L1 5808 6183 0 669 245 164 45 chr3 5653568 5653927 -221870651 - MLT1J1 LTR MaLR 0 446 45 377 323 0 0 chr3 5654952 5655045 -221869533 - MIR3 SINE MIR -7 201 109 291 274 16 0 chr3 5655099 5655161 -221869417 - MIR SINE MIR -108 100 38 1565 158 36 37 chr3 5655243 5655719 -221868859 + L1M2 LINE L1 5088 5562 -729 226 180 0 20 chr3 5655764 5655814 -221868764 + L1MCa LINE L1 2016 2064 -4362 * 278 261 23 0 chr3 5655801 5655889 -221868689 + L1MC4 LINE L1 6614 6703 -1339 2604 165 34 25 chr3 5656039 5656652 -221867926 - pTR5 LTR ERV1 -1075 1363 745 230 152 0 0 chr3 5656655 5656688 -221867890 - Alu SINE Alu -265 34 2 635 261 159 8 chr3 5656722 5656979 -221867599 - L1ME3A LINE L1 -191 5979 5684 1242 124 10 38 chr3 5657242 5657451 -221867127 + AluSg/x SINE Alu 105 307 -5 261 57 0 0 chr3 5659239 5659274 -221865304 + (CA)n Simple_repeat Simple_repeat 2 36 0 480 354 28 6 chr3 5660357 5660538 -221864040 + MIR SINE MIR 3 187 -75 2528 153 88 7 chr3 5662101 5662533 -221862045 - MLT1C LTR MaLR 0 467 1 1375 233 102 32 chr3 5663266 5663738 -221860840 - MLT1D LTR MaLR 0 505 1 1626 154 42 19 chr3 5664352 5664664 -221859914 + L1MB3 LINE L1 5863 6181 -2 299 229 60 78 chr3 5664890 5665056 -221859522 + LTR16A1 LTR ERVL 245 407 -50 2052 149 10 0 chr3 5665416 5665725 -221858853 + AluSx SINE Alu 1 312 0 951 208 137 35 chr3 5666003 5666316 -221858262 - LTR37A LTR ERV1 -4 422 78 890 201 0 18 chr3 5666317 5666481 -221858097 + FRAM SINE Alu 3 163 -3 1484 190 4 11 chr3 5666545 5666819 -221857759 + AluJo SINE Alu 40 311 -1 454 234 128 0 chr3 5666940 5667081 -221857497 + MER103 DNA DNA 8 166 0 518 350 16 40 chr3 5667696 5667946 -221856632 + MIR SINE MIR 9 250 -12 484 192 46 15 chr3 5668106 5668236 -221856342 - MER113 DNA MER1_type? -386 135 2 319 286 216 12 chr3 5668240 5668394 -221856184 + L3 LINE CR1 1288 1409 -168 2920 181 11 29 chr3 5668394 5668914 -221855664 + MLT2B2 LTR ERVL 1 511 -4 319 286 216 12 chr3 5668914 5669000 -221855578 + L3 LINE CR1 1409 1577 0 375 60 0 0 chr3 5669496 5669546 -221855032 + (CA)n Simple_repeat Simple_repeat 2 51 0 380 248 90 35 chr3 5669900 5670045 -221854533 - MIR SINE MIR -36 226 74 331 260 72 27 chr3 5670089 5670240 -221854338 - MIR3 SINE MIR -30 178 28 189 225 0 0 chr3 5670412 5670452 -221854126 - MIR SINE MIR -13 249 210 288 360 0 0 chr3 5670553 5670653 -221853925 - MIR SINE MIR -76 132 33 311 255 39 98 chr3 5670813 5670966 -221853612 + L1M2a LINE L1 610 753 -6415 245 270 27 14 chr3 5671531 5671605 -221852973 + MIR SINE MIR 81 155 -107 414 325 36 60 chr3 5671669 5671761 -221852817 + L2 LINE L2 3111 3199 -73 740 236 83 126 chr3 5671761 5672269 -221852309 - LTR16C LTR ERVL -3 488 3 414 325 36 60 chr3 5672269 5672342 -221852236 + L2 LINE L2 3199 3272 0 280 233 50 0 chr3 5672552 5672612 -221851966 + L2 LINE L2 3198 3260 -12 368 218 65 73 chr3 5672953 5673259 -221851319 + MLT1H LTR MaLR 206 549 0 21 36 0 0 chr3 5675041 5675069 -221849509 + AT_rich Low_complexity Low_complexity 1 28 0 516 266 50 50 chr3 5675125 5675186 -221849392 + MIR SINE MIR 41 101 -161 1636 210 83 38 chr3 5675186 5675629 -221848949 - MLT1C LTR MaLR 0 467 5 516 266 50 50 chr3 5675629 5675789 -221848789 + MIR SINE MIR 100 262 0 399 313 22 15 chr3 5676220 5676354 -221848224 + MIR SINE MIR 20 154 -108 2662 154 0 5 chr3 5676387 5676809 -221847769 + L1MB3 LINE L1 5757 6176 -7 25 0 0 0 chr3 5676809 5676834 -221847744 + AT_rich Low_complexity Low_complexity 1 25 0 484 299 41 7 chr3 5677062 5677209 -221847369 + MIR3 SINE MIR 14 165 -43 677 112 45 15 chr3 5677474 5677608 -221846970 + L1MB2 LINE L1 6034 6171 0 2097 145 0 0 chr3 5677908 5678218 -221846360 + AluJb SINE Alu 1 310 -2 500 346 121 32 chr3 5678510 5678857 -221845721 - L2 LINE L2 0 3272 2895 2346 100 0 3 chr3 5679129 5679439 -221845139 + AluSx SINE Alu 1 309 -3 2622 148 54 6 chr3 5680729 5681249 -221843329 - L1MC1 LINE L1 -18 6315 5727 283 346 60 39 chr3 5681325 5681507 -221843071 - L3 LINE CR1 -32 1545 1360 2143 87 52 16 chr3 5681595 5681801 -221842777 - L1PA12 LINE L1 -2 6166 5944 3201 119 2 5 chr3 5681801 5682236 -221842342 - MER57B LTR ERV1 0 434 1 2143 87 52 16 chr3 5682236 5682339 -221842239 - L1PA12 LINE L1 -224 5944 5846 375 331 192 23 chr3 5682504 5682894 -221841684 - L3 LINE CR1 -346 1231 776 546 300 95 71 chr3 5682985 5683481 -221841097 - L2 LINE L2 -1 3312 2805 24 32 0 0 chr3 5683873 5683904 -221840674 + AT_rich Low_complexity Low_complexity 1 31 0 213 250 77 0 chr3 5684194 5684246 -221840332 - L2 LINE L2 0 3272 3217 1069 211 5 0 chr3 5684252 5684446 -221840132 + MER63A DNA MER1_type 5 199 -11 410 324 53 79 chr3 5684461 5685051 -221839527 - L2 LINE L2 -51 3221 2661 570 90 13 0 chr3 5685180 5685258 -221839320 - MADE1 DNA Mariner -1 79 1 798 207 19 58 chr3 5685519 5685727 -221838851 + MER3 DNA MER1_type 1 200 -9 229 322 0 0 chr3 5686537 5686596 -221837982 - L2 LINE L2 -2 3311 3253 2144 117 0 0 chr3 5687255 5687545 -221837033 - AluSc SINE Alu -12 297 8 310 324 94 18 chr3 5687765 5687935 -221836643 - MIR SINE MIR -65 197 15 190 250 54 0 chr3 5688666 5688722 -221835856 - MIR SINE MIR -79 183 125 334 308 0 34 chr3 5690472 5690589 -221833989 - MIR3 SINE MIR -90 118 6 950 272 66 11 chr3 5690700 5690987 -221833591 + MER102b DNA MER1_type 21 323 -18 2337 179 10 0 chr3 5691166 5691563 -221833015 - MER57A LTR ERV1 0 403 3 424 91 0 26 chr3 5691756 5691833 -221832745 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 192 263 225 0 chr3 5691887 5691967 -221832611 - L2 LINE L2 -1 3312 3215 531 289 65 47 chr3 5692217 5692449 -221832129 - MIR SINE MIR -10 252 17 303 28 0 0 chr3 5692522 5692558 -221832020 + (CA)n Simple_repeat Simple_repeat 2 37 0 1154 86 0 0 chr3 5693061 5693213 -221831365 + AluY SINE Alu 160 311 0 471 304 104 11 chr3 5694087 5694347 -221830231 - L2 LINE L2 0 3313 3030 548 291 57 40 chr3 5694595 5694822 -221829756 + MIR SINE MIR 20 250 -12 22 0 0 0 chr3 5695234 5695256 -221829322 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 0 0 chr3 5696210 5696274 -221828304 - MER117 DNA MER1_type -119 78 15 397 302 78 0 chr3 5698317 5698514 -221826064 - MIR SINE MIR 0 262 50 193 294 206 10 chr3 5698955 5699057 -221825521 - MIR SINE MIR -138 124 3 366 367 6 28 chr3 5699393 5699573 -221825005 - MIR3 SINE MIR -10 198 23 275 360 74 46 chr3 5699807 5699982 -221824596 + L3 LINE CR1 214 393 -1184 815 346 99 9 chr3 5700221 5700470 -221824108 + L3 LINE CR1 400 625 -952 210 37 0 0 chr3 5700470 5700497 -221824081 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 815 346 99 9 chr3 5700497 5700701 -221823877 + L3 LINE CR1 625 894 -683 1053 179 10 0 chr3 5701056 5701251 -221823327 - MER58 DNA MER1_type -2187 233 37 198 0 0 0 chr3 5701283 5701305 -221823273 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 331 44 0 0 chr3 5701735 5701800 -221822778 + AluY SINE Alu 237 301 0 1666 210 57 7 chr3 5702671 5703109 -221821469 - MLT1C LTR MaLR 0 467 8 1716 71 5 0 chr3 5703169 5703379 -221821199 + AluY SINE Alu 86 296 -15 11364 119 19 38 chr3 5703403 5703546 -221821032 + Tigger1 DNA MER2_type 1 145 -2273 1090 113 60 0 chr3 5703546 5703714 -221820864 - L1PB3 LINE L1 -1 6153 5976 11364 119 19 38 chr3 5703714 5704308 -221820270 + Tigger1 DNA MER2_type 145 749 -1669 2136 115 30 7 chr3 5704308 5704579 -221819999 + AluSq SINE Alu 1 281 -32 960 122 23 0 chr3 5704579 5704751 -221819827 + GA-rich Low_complexity Low_complexity 3 178 0 2136 115 30 7 chr3 5704751 5704783 -221819795 + AluSq SINE Alu 281 311 -2 11364 119 19 38 chr3 5704783 5706016 -221818562 + Tigger1 DNA MER2_type 749 1934 -484 2186 152 20 93 chr3 5706016 5706509 -221818069 - LTR32 LTR ERVL 0 471 15 2955 140 10 6 chr3 5706509 5706995 -221817583 + Tigger1 DNA MER2_type 1930 2417 -1 434 274 42 53 chr3 5707095 5707285 -221817293 - MIR SINE MIR -36 226 39 315 452 25 0 chr3 5707478 5707635 -221816943 - L2 LINE L2 -12 3260 3100 * 621 292 31 5 chr3 5707633 5707825 -221816753 - MIR SINE MIR -1 261 65 354 304 9 9 chr3 5708028 5708143 -221816435 + MIR SINE MIR 137 251 -11 245 289 22 44 chr3 5708439 5708529 -221816049 + L3 LINE CR1 1488 1575 -2 475 305 72 6 chr3 5709810 5709977 -221814601 + MIR SINE MIR 37 214 -48 783 73 47 80 chr3 5710577 5710592 -221813986 + L1MA5A LINE L1 6153 6167 -130 1827 153 40 35 chr3 5710592 5710965 -221813613 + THE1C LTR MaLR 1 375 0 783 73 47 80 chr3 5710965 5711073 -221813505 + L1MA5A LINE L1 6167 6273 -24 455 105 53 0 chr3 5711073 5711099 -221813479 + MADE1 DNA Mariner 1 24 -56 2312 84 19 10 chr3 5711099 5711407 -221813171 - AluY SINE Alu 0 311 1 455 105 53 0 chr3 5711407 5711456 -221813122 + MADE1 DNA Mariner 24 80 0 783 73 47 80 chr3 5711456 5711481 -221813097 + L1MA5A LINE L1 6273 6297 0 1161 195 20 28 chr3 5712195 5712526 -221812052 - MLT2B3 LTR ERVL 0 554 231 1401 159 39 0 chr3 5712538 5712796 -221811782 - MLT2A2 LTR ERVL -185 268 1 698 296 102 19 chr3 5712890 5713204 -221811374 + MER102b DNA MER1_type 2 341 0 210 288 82 0 chr3 5713306 5713379 -221811199 + L2 LINE L2 3235 3313 0 238 281 67 11 chr3 5713387 5713476 -221811102 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 5714704 5714895 -221809683 - MIR SINE MIR -43 219 18 304 272 25 0 chr3 5715005 5715086 -221809492 - MER81 DNA DNA -5 109 27 260 184 0 20 chr3 5715109 5715158 -221809420 - MER81 DNA DNA -66 48 1 2377 124 5 22 chr3 5715337 5715707 -221808871 + THE1B LTR MaLR 1 364 0 294 320 56 8 chr3 5715961 5716086 -221808492 - MIR SINE MIR -29 233 103 355 271 75 0 chr3 5717014 5717147 -221807431 + LTR67 LTR ERVL 403 545 -12 2246 103 3 10 chr3 5717193 5717505 -221807073 - AluSg SINE Alu 0 310 1 1632 167 39 33 chr3 5717591 5717927 -221806651 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr3 5718083 5718104 -221806474 + AT_rich Low_complexity Low_complexity 1 21 0 205 353 35 12 chr3 5718276 5718361 -221806217 - MIR SINE MIR 0 262 176 496 286 31 26 chr3 5718749 5718941 -221805637 - MIR SINE MIR 0 262 70 1131 179 37 34 chr3 5719155 5719423 -221805155 - L1MB8 LINE L1 -75 6103 5835 186 191 0 0 chr3 5719712 5719754 -221804824 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 89 44 0 chr3 5722697 5722742 -221801836 + (TTA)n Simple_repeat Simple_repeat 2 48 0 186 133 0 0 chr3 5723055 5723085 -221801493 + (T)n Simple_repeat Simple_repeat 1 30 0 286 339 106 21 chr3 5727022 5727211 -221797367 - MIR SINE MIR -21 241 37 419 234 81 16 chr3 5727526 5727650 -221796928 - MIR SINE MIR -18 244 113 584 292 80 56 chr3 5728393 5728732 -221795846 - L1ME4a LINE L1 0 6121 5775 252 268 0 0 chr3 5731767 5731823 -221792755 + L2 LINE L2 3176 3231 -41 2203 137 44 34 chr3 5732025 5732248 -221792330 - MLT1B LTR MaLR 0 390 160 2427 93 3 0 chr3 5732248 5732558 -221792020 - AluSq SINE Alu -2 311 1 2203 137 44 34 chr3 5732558 5732720 -221791858 - MLT1B LTR MaLR -230 160 1 514 343 0 0 chr3 5732881 5733024 -221791554 - MIR3 SINE MIR -23 185 43 213 321 0 0 chr3 5733736 5733792 -221790786 - L2 LINE L2 -5 3308 3253 843 233 110 8 chr3 5734199 5734435 -221790143 - MIR SINE MIR 0 262 3 242 289 47 39 chr3 5734436 5734564 -221790014 - L2 LINE L2 -494 2820 2692 1793 166 7 7 chr3 5735137 5735433 -221789145 + AluJo SINE Alu 5 300 -12 415 279 144 19 chr3 5735742 5735950 -221788628 - L2 LINE L2 -12 3301 3068 324 278 107 47 chr3 5736721 5736890 -221787688 - MIR3 SINE MIR -7 201 23 4720 184 57 16 chr3 5737086 5738172 -221786406 - L1MC4 LINE L1 -5 8037 6907 1000 288 88 22 chr3 5738223 5738467 -221786111 - LTR16C LTR ERVL -22 469 192 2182 165 93 27 chr3 5738467 5738941 -221785637 + MLT1D LTR MaLR 1 505 0 1000 288 88 22 chr3 5738941 5739061 -221785517 - LTR16C LTR ERVL -299 192 81 2690 80 11 16 chr3 5740003 5740379 -221784199 - THE1C LTR MaLR 0 375 2 180 324 25 88 chr3 5740444 5740728 -221783850 + L2 LINE L2 2711 2976 -338 244 295 16 0 chr3 5740890 5740951 -221783627 + L2 LINE L2 3206 3267 -5 448 303 68 19 chr3 5741034 5741120 -221783458 + MIR3 SINE MIR 33 113 -95 20476 58 1 18 chr3 5741120 5744577 -221780001 + L1PA5 LINE L1 2698 6145 -9 448 303 68 19 chr3 5744577 5744652 -221779926 + MIR3 SINE MIR 113 202 -6 562 266 128 21 chr3 5745195 5745383 -221779195 + MIR SINE MIR 18 225 -37 240 381 49 69 chr3 5745397 5745846 -221778732 - L2 LINE L2 -8 3264 2825 189 133 0 0 chr3 5745876 5745906 -221778672 - L2 LINE L2 -4 3309 3280 234 293 73 0 chr3 5745913 5745995 -221778583 - MIR SINE MIR -95 167 80 3042 144 26 0 chr3 5746015 5746515 -221778063 - L1PA16 LINE L1 -2 6164 5652 1339 107 9 0 chr3 5746515 5746731 -221777847 + L1P4 LINE L1 5377 5594 -572 293 328 49 16 chr3 5747059 5747181 -221777397 - MIR SINE MIR -105 157 32 6410 256 85 48 chr3 5747402 5749821 -221774757 + L2 LINE L2 450 2958 -356 858 176 4 106 chr3 5749822 5750049 -221774529 + MER3 DNA MER1_type 6 209 0 979 262 19 52 chr3 5750058 5750382 -221774196 + L2 LINE L2 2966 3278 -35 262 274 16 0 chr3 5750575 5750637 -221773941 + L2 LINE L2 3136 3198 -74 979 157 0 0 chr3 5752404 5752557 -221772021 + FRAM SINE Alu 21 173 -3 377 224 115 51 chr3 5753100 5753256 -221771322 + MIR3 SINE MIR 40 205 -3 762 289 62 55 chr3 5753751 5754204 -221770374 - MLT1K LTR MaLR -64 524 69 834 286 44 8 chr3 5754378 5754630 -221769948 + MIR SINE MIR 2 262 0 289 341 12 0 chr3 5754633 5754718 -221769860 - MIR SINE MIR -93 115 30 630 297 39 0 chr3 5755884 5756066 -221768512 - MIR SINE MIR -48 214 26 2645 171 92 14 chr3 5756129 5756639 -221767939 - MER44D DNA MER2_type 0 605 1 270 383 87 0 chr3 5756713 5756896 -221767682 - MIR SINE MIR 0 262 64 1197 252 20 17 chr3 5756906 5757208 -221767370 + LTR16C LTR ERVL 189 491 0 22 0 0 0 chr3 5758078 5758100 -221766478 + AT_rich Low_complexity Low_complexity 1 22 0 2186 107 3 7 chr3 5758189 5758479 -221766099 + AluSc SINE Alu 1 289 -20 189 0 0 0 chr3 5758881 5758902 -221765676 + (T)n Simple_repeat Simple_repeat 1 21 0 543 285 21 57 chr3 5760026 5760061 -221764517 + MIR3 SINE MIR 19 54 -154 1221 186 91 96 chr3 5760061 5760459 -221764119 + MSTD LTR MaLR 1 396 0 543 285 21 57 chr3 5760459 5760616 -221763962 + MIR3 SINE MIR 54 204 -4 43 47 0 0 chr3 5760631 5760695 -221763883 + AT_rich Low_complexity Low_complexity 1 64 0 29384 111 11 57 chr3 5761293 5767749 -221756829 - L1PA7 LINE L1 0 6154 12 24 32 0 0 chr3 5768324 5768355 -221756223 + AT_rich Low_complexity Low_complexity 1 31 0 564 295 84 40 chr3 5768457 5768708 -221755870 + MIR SINE MIR 1 262 0 372 273 23 34 chr3 5768833 5769009 -221755569 - MER104 DNA Tc2 0 180 7 269 272 65 33 chr3 5769258 5769350 -221755228 - L3 LINE CR1 -7 1570 1476 402 275 261 24 chr3 5769941 5770152 -221754426 - MIR SINE MIR 0 262 2 29 0 0 0 chr3 5770618 5770647 -221753931 + AT_rich Low_complexity Low_complexity 1 29 0 11466 35 19 3 chr3 5770647 5772829 -221751749 - L1PA3 LINE L1 -3 6152 3948 15301 34 1 0 chr3 5772829 5774795 -221749783 + L1PA3 LINE L1 1965 3932 -2214 525 111 0 22 chr3 5774911 5775001 -221749577 + MER53 DNA DNA 102 189 0 1819 196 123 5 chr3 5775001 5775399 -221749179 + MLT1F1 LTR MaLR 123 567 0 2059 111 26 65 chr3 5775539 5775926 -221748652 + THE1C LTR MaLR 1 372 -3 21 71 0 0 chr3 5776009 5776051 -221748527 + AT_rich Low_complexity Low_complexity 1 42 0 232 298 57 79 chr3 5776082 5776252 -221748326 - MIR SINE MIR -56 206 32 2192 123 0 3 chr3 5776394 5776695 -221747883 + AluSg SINE Alu 1 300 -10 2191 148 0 0 chr3 5779176 5779486 -221745092 - AluSx SINE Alu -2 310 1 317 261 114 34 chr3 5780143 5780317 -221744261 - MIR3 SINE MIR -6 202 13 * 541 327 128 0 chr3 5780265 5780476 -221744102 + MIR SINE MIR 23 260 -2 333 238 60 24 chr3 5781126 5781210 -221743368 - MIR SINE MIR -157 105 19 321 26 0 0 chr3 5781389 5781427 -221743151 + (CA)n Simple_repeat Simple_repeat 1 38 0 2386 81 35 3 chr3 5782121 5782465 -221742113 + THE1A LTR MaLR 1 355 0 705 316 50 11 chr3 5783332 5783693 -221740885 + LTR16A LTR ERVL 1 375 -75 658 291 100 9 chr3 5783904 5784124 -221740454 + MIR SINE MIR 23 262 0 1226 83 52 5 chr3 5784275 5784468 -221740110 + MLT2A1 LTR ERVL 3 204 -240 5093 83 0 0 chr3 5784468 5785163 -221739415 - L1PA4 LINE L1 -5450 696 2 * 36236 38 4 4 chr3 5785156 5790629 -221733949 + L1PA4 LINE L1 685 6152 -3 1490 97 26 4 chr3 5790666 5790892 -221733686 + MLT2A1 LTR ERVL 214 444 0 428 257 60 49 chr3 5791430 5791642 -221732936 + MLT1L LTR MaLR 366 605 -8 302 302 7 64 chr3 5791742 5791868 -221732710 - MIR3 SINE MIR -41 167 45 288 185 37 0 chr3 5791871 5791925 -221732653 - L2 LINE L2 0 3272 3217 269 313 86 31 chr3 5792783 5792911 -221731667 + MER5A DNA MER1_type 55 189 0 * 279 215 51 51 chr3 5792911 5792965 -221731613 - MIR3 SINE MIR -47 161 108 189 345 18 0 chr3 5793159 5793214 -221731364 - L2 LINE L2 -17 3296 3241 606 297 109 17 chr3 5795979 5796218 -221728360 + MIR SINE MIR 2 262 0 195 328 50 34 chr3 5796301 5796420 -221728158 - MIR SINE MIR -95 167 47 191 203 68 0 chr3 5797886 5797945 -221726633 + L2 LINE L2 1644 1706 -1608 688 279 66 44 chr3 5798059 5798378 -221726200 + MLT1I LTR MaLR 63 388 -21 1309 290 88 34 chr3 5798420 5799013 -221725565 + L2 LINE L2 1801 2425 -889 1341 203 25 0 chr3 5799027 5799268 -221725310 + MLT1C LTR MaLR 221 467 0 379 266 64 0 chr3 5801828 5801922 -221722656 - MIR SINE MIR -116 146 47 472 283 20 26 chr3 5802221 5802373 -221722205 - MIR3 SINE MIR -24 184 34 480 271 33 20 chr3 5803354 5803505 -221721073 - MIR3 SINE MIR -16 192 40 598 343 41 0 chr3 5803511 5803730 -221720848 - LTR16C LTR ERVL 0 491 264 2458 173 70 10 chr3 5804073 5804559 -221720019 - MLT2B2 LTR ERVL 0 515 1 2749 169 26 17 chr3 5804559 5805225 -221719353 - ERVL LTR ERVL 0 5654 5007 585 163 0 0 chr3 5805225 5805317 -221719261 - MLT2B1 LTR ERVL -428 92 1 637 284 80 49 chr3 5805450 5805774 -221718804 - MLT1K LTR MaLR 0 588 255 686 258 62 0 chr3 5805830 5806008 -221718570 - MER5A DNA MER1_type 0 189 1 457 141 16 132 chr3 5806032 5806153 -221718425 - MLT1K LTR MaLR -448 107 1 482 294 47 30 chr3 5806201 5806562 -221718016 + L1MEc LINE L1 1294 1660 -4736 3038 279 38 27 chr3 5806567 5807456 -221717122 + L1MEc LINE L1 3032 3946 -2269 1637 188 0 24 chr3 5807456 5807744 -221716834 + AluJo SINE Alu 11 291 -21 3038 279 38 27 chr3 5807744 5808350 -221716228 + L1MEc LINE L1 3946 4544 -1671 5245 227 42 16 chr3 5808352 5810199 -221714379 + L1MCa LINE L1 575 2662 -3945 1356 235 40 0 chr3 5810210 5810605 -221713973 + L1MCa LINE L1 3308 3718 -2708 1745 56 8 0 chr3 5810611 5810845 -221713733 + L1P LINE L1 4872 5107 -1039 213 136 45 0 chr3 5810845 5810911 -221713667 + (TA)n Simple_repeat Simple_repeat 2 70 0 6812 62 5 0 chr3 5810913 5812404 -221712174 - L1PA6 LINE L1 -13 6141 4643 5330 39 5 3 chr3 5812404 5813050 -221711528 - L1PA5 LINE L1 -2 6152 5506 31631 104 8 10 chr3 5813052 5817713 -221706865 - L1PA6 LINE L1 -1494 4652 1 320 248 0 0 chr3 5817752 5817840 -221706738 + L1PB4 LINE L1 6072 6149 -7 14183 159 29 8 chr3 5817855 5819913 -221704665 - L1MA1 LINE L1 0 7721 5557 1838 183 0 3 chr3 5819913 5820214 -221704364 - AluSx SINE Alu -12 300 1 14183 159 29 8 chr3 5820214 5821960 -221702618 - L1MA1 LINE L1 -2164 5557 3849 1859 209 57 90 chr3 5821961 5822526 -221702052 + MLT2B3 LTR ERVL 1 546 -8 10552 130 24 7 chr3 5822530 5824466 -221700112 - L1MA1 LINE L1 -3713 3852 1881 1761 163 14 20 chr3 5824467 5824811 -221699767 + L1MC1 LINE L1 5272 5613 -720 2296 169 11 13 chr3 5824814 5825263 -221699315 + L1MA7 LINE L1 5842 6289 -2 3822 153 28 36 chr3 5825280 5825703 -221698875 + L1MC1 LINE L1 5595 6011 -322 2046 145 0 7 chr3 5825703 5826007 -221698571 - AluSx SINE Alu -10 302 1 3822 153 28 36 chr3 5826007 5826328 -221698250 + L1MC1 LINE L1 6011 6333 0 634 241 42 87 chr3 5826333 5826735 -221697843 + L1ME3A LINE L1 4475 4858 -1288 244 300 85 0 chr3 5826742 5826872 -221697706 + L1ME3A LINE L1 5006 5146 -1000 4443 133 27 13 chr3 5826873 5827622 -221696956 + Tigger2 DNA MER2_type 1 759 -1959 1117 167 73 29 chr3 5827677 5827862 -221696716 + Tigger2 DNA MER2_type 2453 2653 -55 2262 116 0 0 chr3 5827862 5828164 -221696414 - AluSq SINE Alu -11 302 1 1117 167 73 29 chr3 5828164 5828223 -221696355 + Tigger2 DNA MER2_type 2653 2708 0 696 257 32 24 chr3 5828225 5828542 -221696036 + L1ME3A LINE L1 5148 5468 -694 313 236 67 0 chr3 5828550 5828639 -221695939 - L1MA9 LINE L1 -38 6274 6180 2074 123 0 10 chr3 5828639 5828931 -221695647 + AluSx SINE Alu 1 289 -23 1044 123 21 48 chr3 5828946 5829153 -221695425 + AluSq SINE Alu 132 313 0 2722 183 57 37 chr3 5829180 5829796 -221694782 - L1MA9 LINE L1 -181 6131 5504 1870 242 83 44 chr3 5829784 5830445 -221694133 + L1ME3A LINE L1 5448 6134 -36 * 23 54 0 0 chr3 5831034 5831071 -221693507 + AT_rich Low_complexity Low_complexity 1 37 0 188 208 75 0 chr3 5831106 5831159 -221693419 - MIR SINE MIR -107 155 99 328 277 149 0 chr3 5831161 5831255 -221693323 + MIR3 SINE MIR 89 196 -12 236 216 91 80 chr3 5832210 5832298 -221692280 - MIR SINE MIR -68 140 52 234 219 0 0 chr3 5832472 5832536 -221692042 + (TA)n Simple_repeat Simple_repeat 2 65 0 931 292 67 49 chr3 5833558 5834068 -221690510 - MLT1K LTR MaLR -60 528 10 26 74 0 0 chr3 5834345 5834399 -221690179 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr3 5834727 5834757 -221689821 + AT_rich Low_complexity Low_complexity 1 30 0 2286 107 0 10 chr3 5834943 5835252 -221689326 - AluSx SINE Alu -6 306 1 194 283 110 55 chr3 5836852 5836997 -221687581 + MIR3 SINE MIR 44 196 -12 332 323 26 42 chr3 5837150 5837342 -221687236 + MIR SINE MIR 1 189 -73 2235 120 17 6 chr3 5837561 5837918 -221686660 + MER46B DNA MER2_type 1 236 0 207 306 10 31 chr3 5838642 5838740 -221685838 - MIR SINE MIR 0 262 167 42718 32 21 2 chr3 5838764 5844798 -221679780 + L1HS LINE L1 3 6155 0 266 268 85 12 chr3 5844803 5844885 -221679693 - MIR SINE MIR -133 129 42 936 300 129 12 chr3 5844955 5845445 -221679133 + MLT1H1 LTR MaLR 1 547 -8 258 200 0 33 chr3 5845673 5845733 -221678845 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 545 312 41 45 chr3 5846553 5846822 -221677756 + MLT1K LTR MaLR 317 584 -4 2399 43 13 0 chr3 5846902 5847201 -221677377 + L1PA3 LINE L1 5849 6179 0 232 36 0 0 chr3 5847201 5847229 -221677349 + (TAAAAA)n Simple_repeat Simple_repeat 5 180 0 2296 89 0 40 chr3 5847372 5847697 -221676881 - AluSx SINE Alu 0 312 1 342 0 0 0 chr3 5848620 5848658 -221675920 + (A)n Simple_repeat Simple_repeat 1 38 0 1170 266 110 39 chr3 5848977 5849639 -221674939 - L2 LINE L2 -6 3307 2608 998 214 57 21 chr3 5849644 5849975 -221674603 - L1MEc LINE L1 -4330 2066 1724 6721 26 0 0 chr3 5849978 5850790 -221673788 - L1PA3 LINE L1 0 6155 5344 2962 299 56 25 chr3 5850792 5852387 -221672191 - L1MEc LINE L1 -4675 1721 77 335 227 57 102 chr3 5852390 5852566 -221672012 - MIR3 SINE MIR -22 186 19 384 157 0 14 chr3 5852591 5852661 -221671917 - MLT1C LTR MaLR -1 466 398 1928 150 0 0 chr3 5852667 5852941 -221671637 + AluSx SINE Alu 1 274 -38 807 66 0 0 chr3 5852941 5853047 -221671531 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 901 151 0 0 chr3 5853058 5853184 -221671394 + AluSg/x SINE Alu 148 273 -39 234 105 0 0 chr3 5853190 5853228 -221671350 + (GA)n Simple_repeat Simple_repeat 1 38 0 1294 228 27 49 chr3 5853232 5853640 -221670938 - MLT1C LTR MaLR -62 405 7 346 268 167 24 chr3 5855012 5855180 -221669398 - MIR3 SINE MIR -7 201 10 1214 295 164 15 chr3 5855203 5856043 -221668535 + L2 LINE L2 2116 3082 -231 2265 110 7 0 chr3 5856241 5856541 -221668037 - AluSq SINE Alu -11 302 1 1055 173 0 0 chr3 5856574 5856736 -221667842 - FAM SINE Alu -12 163 2 336 322 77 11 chr3 5860033 5860216 -221664362 + L2 LINE L2 3118 3312 -1 443 198 16 24 chr3 5863304 5863430 -221661148 + L1ME4a LINE L1 5993 6117 -4 21 0 0 0 chr3 5863976 5863997 -221660581 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 5864253 5864274 -221660304 + AT_rich Low_complexity Low_complexity 1 21 0 354 370 79 46 chr3 5864939 5865242 -221659336 - L2 LINE L2 -18 3254 2942 225 273 116 88 chr3 5865401 5865617 -221658961 + L2 LINE L2 2925 3146 -126 1084 215 66 78 chr3 5866624 5866645 -221657933 - MLT1B LTR MaLR 0 390 370 1942 185 25 3 chr3 5866645 5867002 -221657576 - MLT1A1 LTR MaLR 0 365 1 1084 215 66 78 chr3 5867002 5867375 -221657203 - MLT1B LTR MaLR -20 370 1 623 87 19 0 chr3 5867383 5867486 -221657092 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 554 149 0 9 chr3 5867486 5867593 -221656985 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 208 260 0 0 chr3 5867762 5867812 -221656766 - L2 LINE L2 -8 3305 3256 465 269 51 32 chr3 5867893 5868049 -221656529 - MER5B DNA MER1_type -1 177 19 1744 238 97 33 chr3 5869009 5869648 -221654930 + MER20B DNA MER1_type 96 775 -8 214 208 0 38 chr3 5869959 5870012 -221654566 - MIR SINE MIR -51 211 161 10018 86 13 1 chr3 5870034 5872200 -221652378 - L1PA7 LINE L1 -2 6152 3969 8740 98 30 9 chr3 5872200 5873588 -221650990 + L1PA7 LINE L1 2546 3963 -2183 212 348 102 0 chr3 5873592 5873710 -221650868 - MIR SINE MIR -108 154 25 499 257 22 15 chr3 5874386 5874522 -221650056 + MER117 DNA MER1_type 8 144 -53 275 297 0 0 chr3 5874607 5874671 -221649907 - MIR SINE MIR -64 144 81 2805 19 0 0 chr3 5874672 5874985 -221649593 + AluYb8 SINE Alu 1 313 -5 3808 90 8 4 chr3 5875016 5875548 -221649030 + L1PA14 LINE L1 5627 6160 -1 243 290 40 10 chr3 5875637 5875737 -221648841 - MIR SINE MIR -23 239 137 291 65 87 0 chr3 5877002 5877048 -221647530 + MADE1 DNA Mariner 4 53 -27 372 295 132 44 chr3 5877121 5877262 -221647316 - MIR SINE MIR -1 261 91 2387 106 3 0 chr3 5877262 5877573 -221647005 + AluSp SINE Alu 1 312 -1 372 295 132 44 chr3 5877573 5877658 -221646920 - MIR SINE MIR -171 91 15 192 77 0 0 chr3 5878022 5878048 -221646530 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 225 302 58 12 chr3 5878663 5878749 -221645829 + MIR SINE MIR 25 114 -148 364 325 98 0 chr3 5879009 5879172 -221645406 - MIR SINE MIR -1 261 83 415 126 11 23 chr3 5879599 5879686 -221644892 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 1038 265 63 66 chr3 5879860 5880302 -221644276 + L2 LINE L2 2873 3313 0 215 224 17 17 chr3 5880307 5880365 -221644213 - MIR SINE MIR -123 139 82 283 306 231 27 chr3 5880391 5880685 -221643893 + L2 LINE L2 2910 3263 -50 217 368 0 0 chr3 5880710 5880786 -221643792 + MIR SINE MIR 185 260 -2 934 158 20 0 chr3 5881715 5881861 -221642717 - FAM SINE Alu -14 171 23 294 264 0 11 chr3 5882746 5882837 -221641741 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 486 0 0 0 chr3 5883155 5883209 -221641369 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr3 5883525 5883554 -221641024 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 166 107 112 chr3 5883568 5883960 -221640618 + MLT1B LTR MaLR 1 390 0 209 290 108 21 chr3 5884564 5884657 -221639921 + L3 LINE CR1 1383 1483 -94 * 234 318 91 45 chr3 5884650 5884782 -221639796 - L2 LINE L2 0 3313 3176 2219 108 0 3 chr3 5885168 5885464 -221639114 + AluSc SINE Alu 2 296 -13 322 304 77 0 chr3 5886231 5886399 -221638179 + L1ME4a LINE L1 5636 5816 -305 414 275 133 38 chr3 5886486 5886726 -221637852 + L1ME4a LINE L1 5856 6118 -3 287 309 11 11 chr3 5886901 5886995 -221637583 + MIR3 SINE MIR 109 202 -6 315 281 22 50 chr3 5887169 5887308 -221637270 - MIR3 SINE MIR -20 188 54 5166 146 9 25 chr3 5887581 5888683 -221635895 + L1PA16 LINE L1 4686 5762 -404 2216 129 0 37 chr3 5888683 5889032 -221635546 - MER1B DNA MER1_type 0 337 2 5166 146 9 25 chr3 5889032 5889386 -221635192 + L1PA16 LINE L1 5762 6120 -46 7133 128 52 2 chr3 5889399 5890618 -221633960 - HSMAR2 DNA Mariner -22 1280 2 420 307 14 43 chr3 5890769 5890909 -221633669 + MIR3 SINE MIR 4 139 -69 331 328 0 73 chr3 5891045 5891222 -221633356 - L2 LINE L2 -227 3045 2882 215 200 122 78 chr3 5892158 5892248 -221632330 + L3 LINE CR1 295 388 -1189 3494 42 0 5 chr3 5892737 5893166 -221631412 - L1PA5 LINE L1 0 6154 5728 3621 35 29 3 chr3 5893168 5893804 -221630774 + L1PA5 LINE L1 5087 5735 -419 1556 201 223 2 chr3 5893855 5894267 -221630311 - MLT1F LTR MaLR 0 542 40 193 194 0 0 chr3 5894307 5894343 -221630235 - L2 LINE L2 -9 3304 3269 274 336 141 32 chr3 5894799 5895346 -221629232 - L2 LINE L2 -7 3306 2703 2162 113 0 7 chr3 5895899 5896201 -221628377 + AluSx SINE Alu 1 300 -12 631 293 96 29 chr3 5896639 5896984 -221627594 - LTR16C LTR ERVL -34 457 90 22 35 0 0 chr3 5897125 5897154 -221627424 + AT_rich Low_complexity Low_complexity 1 29 0 585 259 113 29 chr3 5897423 5897662 -221626916 + MIR SINE MIR 1 259 -3 444 314 182 0 chr3 5897869 5898089 -221626489 + MIR SINE MIR 3 262 0 364 222 99 0 chr3 5898096 5898177 -221626401 - L2 LINE L2 -4 3268 3180 204 216 0 0 chr3 5898311 5898362 -221626216 + GA-rich Low_complexity Low_complexity 4 54 0 382 327 80 12 chr3 5898913 5899075 -221625503 - MIR SINE MIR -56 206 34 781 165 0 24 chr3 5899233 5899351 -221625227 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 5899351 5899392 -221625186 + (CA)n Simple_repeat Simple_repeat 2 42 0 964 222 46 62 chr3 5900252 5900333 -221624245 + MER33 DNA MER1_type 1 82 -2503 2059 173 42 58 chr3 5900333 5900783 -221623795 + LTR47B LTR ERVL 1 443 0 964 222 46 62 chr3 5900783 5901007 -221623571 + MER33 DNA MER1_type 82 301 -23 229 330 43 0 chr3 5901960 5902075 -221622503 + MIR3 SINE MIR 37 156 -52 588 274 18 50 chr3 5902629 5902848 -221621730 - MIR SINE MIR -20 242 31 215 363 127 0 chr3 5903888 5904045 -221620533 - MIR SINE MIR -2 260 84 228 314 108 29 chr3 5904130 5904232 -221620346 + MIR SINE MIR 34 143 -65 314 262 172 21 chr3 5904273 5904418 -221620160 + MIR SINE MIR 36 202 -60 424 56 0 0 chr3 5904423 5904477 -221620101 - MLT2A1 LTR ERVL 0 444 391 321 169 0 0 chr3 5904478 5904537 -221620041 + (TA)n Simple_repeat Simple_repeat 1 59 0 235 292 11 0 chr3 5904537 5904626 -221619952 + L1MC4 LINE L1 6614 6703 -1339 208 151 57 0 chr3 5904627 5904680 -221619898 + (TA)n Simple_repeat Simple_repeat 2 57 0 2256 145 5 30 chr3 5904693 5905066 -221619512 - THE1B LTR MaLR 0 364 1 233 238 71 36 chr3 5905350 5905434 -221619144 + MIR SINE MIR 96 182 -80 518 276 13 26 chr3 5905834 5905990 -221618588 + MIR SINE MIR 2 155 -107 2274 229 92 24 chr3 5906023 5906600 -221617978 + MLT1E2 LTR MaLR 1 616 -10 278 235 82 0 chr3 5906829 5906914 -221617664 - MIR SINE MIR -65 197 106 224 307 183 7 chr3 5907502 5907655 -221616923 + MER5A DNA MER1_type 9 188 -1 1015 281 139 22 chr3 5908210 5908662 -221615916 - MLT1D LTR MaLR 0 505 1 224 194 117 48 chr3 5908773 5908876 -221615702 + MIR SINE MIR 139 248 -14 216 0 0 0 chr3 5909889 5909913 -221614665 + (A)n Simple_repeat Simple_repeat 1 24 0 6069 200 45 9 chr3 5910529 5911836 -221612742 - L1PA12 LINE L1 -4827 2754 1688 4065 2 0 0 chr3 5912261 5912706 -221611872 - L1HS LINE L1 0 6155 5711 1311 106 4 65 chr3 5912749 5912778 -221611800 + L1MA9 LINE L1 6082 6111 -201 1552 194 31 17 chr3 5912778 5913067 -221611511 + AluJo SINE Alu 1 293 -19 1311 106 4 65 chr3 5913067 5913282 -221611296 + L1MA9 LINE L1 6111 6311 -1 645 291 131 43 chr3 5913477 5913852 -221610726 + L3 LINE CR1 623 1030 -547 227 333 0 0 chr3 5913907 5913964 -221610614 + L3 LINE CR1 1409 1465 -112 2223 126 3 0 chr3 5914101 5914411 -221610167 - AluSx SINE Alu -1 311 1 259 305 21 57 chr3 5915114 5915255 -221609323 + MIR SINE MIR 81 216 -46 291 284 35 71 chr3 5915290 5915321 -221609257 - MIR SINE MIR -58 204 173 2612 133 22 38 chr3 5915321 5915359 -221609219 + MER65A LTR ERV1 2 39 -406 204 97 0 0 chr3 5915359 5915390 -221609188 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2612 133 22 38 chr3 5915390 5915802 -221608776 + MER65A LTR ERV1 39 445 0 291 284 35 71 chr3 5915802 5915911 -221608667 - MIR SINE MIR -89 173 69 551 252 80 101 chr3 5916018 5916442 -221608136 + LTR33 LTR ERVL 93 507 -14 323 291 45 27 chr3 5918014 5918060 -221606518 + MIR SINE MIR 95 139 -123 1382 198 77 57 chr3 5918060 5918410 -221606168 + MLT2C1 LTR ERVL 1 361 -36 411 56 0 0 chr3 5918410 5918464 -221606114 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1382 198 77 57 chr3 5918464 5918502 -221606076 + MLT2C1 LTR ERVL 361 397 0 323 291 45 27 chr3 5918502 5918565 -221606013 + MIR SINE MIR 139 206 -56 809 224 0 12 chr3 5918943 5919108 -221605470 + FRAM SINE Alu 1 162 -14 562 253 93 0 chr3 5919356 5919506 -221605072 + MLT1J2 LTR MaLR 18 181 -269 962 293 96 48 chr3 5919518 5920386 -221604192 + L2 LINE L2 2357 3253 -60 601 298 46 21 chr3 5920900 5921138 -221603440 - MIR SINE MIR -16 246 3 198 317 17 17 chr3 5921198 5921258 -221603320 + L2 LINE L2 3002 3061 -211 279 326 12 12 chr3 5921435 5921521 -221603057 - MIR SINE MIR -149 113 28 216 363 124 0 chr3 5921839 5921952 -221602626 + L2 LINE L2 3183 3309 -4 868 293 162 25 chr3 5922115 5922474 -221602104 - MLT1I LTR MaLR 0 409 2 4602 165 47 6 chr3 5922509 5923299 -221601279 - LTR1B LTR ERV1 0 826 5 288 195 158 0 chr3 5923409 5923491 -221601087 + MIR SINE MIR 91 185 -77 2032 141 0 22 chr3 5923499 5923818 -221600760 + AluJb SINE Alu 1 312 0 197 239 22 0 chr3 5923865 5923911 -221600667 + L2 LINE L2 3210 3256 -16 1769 190 22 28 chr3 5925052 5925419 -221599159 - MLT1A1 LTR MaLR 0 467 1 442 141 256 0 chr3 5925766 5925844 -221598734 - Tigger1 DNA MER2_type 0 2418 2321 * 4912 135 7 0 chr3 5925842 5926569 -221598009 - Tigger1 DNA MER2_type -1659 759 28 526 287 23 6 chr3 5927823 5927997 -221596581 - MIR SINE MIR -10 252 76 229 344 10 0 chr3 5928318 5928414 -221596164 - MIR SINE MIR 0 262 166 2131 162 43 94 chr3 5928432 5928511 -221596067 - MLT1D LTR MaLR 0 505 424 1673 191 47 7 chr3 5928511 5928809 -221595769 - AluJo SINE Alu -2 310 1 2131 162 43 94 chr3 5928809 5929259 -221595319 - MLT1D LTR MaLR -81 424 3 27 29 0 0 chr3 5929398 5929432 -221595146 + AT_rich Low_complexity Low_complexity 1 34 0 1391 211 68 4 chr3 5929432 5929712 -221594866 + AluJo SINE Alu 1 298 -14 353 269 17 25 chr3 5929712 5929779 -221594799 + L1ME4a LINE L1 6001 6068 -53 2419 78 0 16 chr3 5929779 5930086 -221594492 - AluY SINE Alu -9 302 1 353 269 17 25 chr3 5930086 5930137 -221594441 + L1ME4a LINE L1 6068 6118 -3 356 325 33 25 chr3 5930520 5930681 -221593897 + MIR SINE MIR 19 189 -27 217 161 195 81 chr3 5930858 5930945 -221593633 - MIR SINE MIR -146 116 20 231 250 0 50 chr3 5930998 5931058 -221593520 - MIR SINE MIR -133 75 19 * 834 267 49 20 chr3 5931029 5931276 -221593302 - MIR SINE MIR -7 255 2 343 318 91 86 chr3 5932625 5933222 -221591356 - L2 LINE L2 -2 3270 2652 537 226 80 15 chr3 5933342 5933479 -221591099 + MIR SINE MIR 9 154 -108 1206 236 35 39 chr3 5933486 5933796 -221590782 - MER46C DNA MER2_type -20 318 10 361 177 63 0 chr3 5933805 5933884 -221590694 + MIR SINE MIR 153 236 -26 263 235 59 0 chr3 5933948 5934016 -221590562 + MIR3 SINE MIR 126 197 -11 1972 158 119 0 chr3 5934099 5934207 -221590371 - MER57A LTR ERV1 0 403 309 3594 131 2 2 chr3 5934207 5934704 -221589874 + LOR1a LTR ERV1 1 497 0 1972 158 119 0 chr3 5934704 5934955 -221589623 - MER57A LTR ERV1 -94 309 1 337 255 0 103 chr3 5935304 5935449 -221589129 + MIR SINE MIR 77 206 -56 3708 113 10 8 chr3 5935493 5935997 -221588581 - MER84 LTR ERV1 0 507 3 3489 138 123 7 chr3 5936139 5936740 -221587838 + LTR51 LTR ERV1 1 671 0 186 239 0 22 chr3 5936763 5936809 -221587769 - MIR SINE MIR -36 226 182 187 233 0 0 chr3 5937027 5937070 -221587508 - MIR SINE MIR -102 160 118 4221 139 16 3 chr3 5937085 5937712 -221586866 + MER41B LTR ERV1 1 635 0 266 119 0 0 chr3 5937721 5937763 -221586815 + AluY SINE Alu 187 228 -73 228 211 135 0 chr3 5937768 5937820 -221586758 - MIR SINE MIR -199 63 5 325 291 48 0 chr3 5938697 5938800 -221585778 - MIR SINE MIR 0 262 155 784 264 40 54 chr3 5938902 5939178 -221585400 - LTR33 LTR ERVL -249 272 1 2162 167 67 42 chr3 5939427 5939877 -221584701 + LOR1b LTR ERV1 1 461 0 758 319 63 21 chr3 5940233 5940612 -221583966 - ERVL LTR ERVL -898 4866 4472 366 294 103 7 chr3 5940961 5941097 -221583481 - MIR SINE MIR -108 154 6 1445 148 40 37 chr3 5941372 5941697 -221582881 - MER33 DNA MER1_type -5 319 1 180 0 0 0 chr3 5941797 5941817 -221582761 + (GAA)n Simple_repeat Simple_repeat 2 21 0 222 296 133 20 chr3 5941919 5942017 -221582561 - MIR SINE MIR -134 128 20 183 80 0 0 chr3 5942024 5942049 -221582529 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3433 178 54 76 chr3 5942349 5942677 -221581901 + MER45B DNA AcHobo 2 336 -704 5732 80 27 1 chr3 5942677 5943424 -221581154 + MER4E LTR ERV1 1 766 0 3433 178 54 76 chr3 5943424 5943669 -221580909 + MER45B DNA AcHobo 336 554 -486 2220 109 13 0 chr3 5943669 5943971 -221580607 - AluY SINE Alu -5 306 1 3433 178 54 76 chr3 5943971 5944210 -221580368 + MER45B DNA AcHobo 554 797 -243 34921 93 7 34 chr3 5944211 5949758 -221574820 + L1PA6 LINE L1 4 5338 -816 2426 62 0 16 chr3 5949758 5950063 -221574515 + AluY SINE Alu 1 300 -11 34921 93 7 34 chr3 5950063 5950851 -221573727 + L1PA6 LINE L1 5338 6146 -8 1305 141 32 8 chr3 5950851 5951100 -221573478 + MER45B DNA AcHobo 786 1040 0 340 289 0 10 chr3 5951115 5951212 -221573366 - MER117 DNA MER1_type -34 163 68 768 230 57 97 chr3 5951567 5951651 -221572927 - MIR SINE MIR -7 255 169 674 140 0 113 chr3 5951651 5951801 -221572777 + FLAM_C SINE Alu 1 133 0 768 230 57 97 chr3 5951801 5951964 -221572614 - MIR SINE MIR -93 169 18 245 195 0 0 chr3 5952307 5952348 -221572230 - L3 LINE CR1 -10 1567 1527 343 253 142 37 chr3 5952349 5952511 -221572067 + MER117 DNA MER1_type 1 179 -18 568 343 55 17 chr3 5952518 5952754 -221571824 + MIR SINE MIR 2 246 -16 255 286 39 26 chr3 5952852 5952929 -221571649 - MIR3 SINE MIR -48 160 83 387 255 33 72 chr3 5952951 5953104 -221571474 + MIR3 SINE MIR 35 181 -27 303 276 0 13 chr3 5953795 5953871 -221570707 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 752 261 71 14 chr3 5953888 5954099 -221570479 + MIR SINE MIR 3 225 -37 201 250 44 59 chr3 5954145 5954213 -221570365 + L2 LINE L2 1366 1432 -1882 * 370 253 0 141 chr3 5954169 5954339 -221570239 - MIR3 SINE MIR -60 148 3 206 319 160 25 chr3 5954370 5954489 -221570089 + L2 LINE L2 3171 3305 -8 488 294 86 12 chr3 5954575 5954738 -221569840 + MIR SINE MIR 1 175 -87 515 214 26 0 chr3 5954759 5954876 -221569702 + MLT2C1 LTR ERVL 1 120 -277 569 168 81 46 chr3 5955047 5955220 -221569358 + L1MC4 LINE L1 7858 8036 -6 1815 155 3 21 chr3 5955228 5955518 -221569060 + AluJb SINE Alu 3 287 -25 43 47 0 0 chr3 5955523 5955587 -221568991 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 5955681 5955710 -221568868 + AT_rich Low_complexity Low_complexity 1 29 0 186 311 90 25 chr3 5956700 5956822 -221567756 - L2 LINE L2 -15 3298 3169 345 234 62 23 chr3 5956917 5957045 -221567533 + HAL1b LINE L1 1216 1348 0 413 193 48 0 chr3 5959377 5959460 -221565118 + MIR3 SINE MIR 82 168 -40 315 264 101 39 chr3 5959487 5959629 -221564949 + MIR SINE MIR 30 145 -63 2208 129 33 30 chr3 5959695 5960058 -221564520 + THE1B LTR MaLR 1 364 0 228 240 72 40 chr3 5960218 5960317 -221564261 + MIR SINE MIR 34 145 -73 399 282 215 19 chr3 5960328 5960537 -221564041 - MIR SINE MIR -1 261 12 228 93 233 0 chr3 5960539 5960582 -221563996 - Charlie1 DNA MER1_type 0 2761 2709 * 453 160 19 19 chr3 5960574 5960680 -221563898 - Charlie1 DNA MER1_type -208 2553 2448 548 279 37 81 chr3 5961456 5961753 -221562825 + L2 LINE L2 2994 3277 -36 226 143 41 20 chr3 5961929 5961978 -221562600 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 502 231 26 8 chr3 5963061 5963178 -221561400 + L2 LINE L2 3154 3272 0 4500 168 37 30 chr3 5963209 5963899 -221560679 + MER6 DNA MER2_type 1 700 -165 1455 119 92 12 chr3 5963899 5964150 -221560428 + AluSg SINE Alu 40 310 0 4500 168 37 30 chr3 5964150 5964318 -221560260 + MER6 DNA MER2_type 700 865 0 247 312 27 54 chr3 5965305 5965491 -221559087 + MIR3 SINE MIR 16 196 -12 612 322 45 25 chr3 5966059 5966304 -221558274 + MIR SINE MIR 13 262 0 271 377 29 58 chr3 5967295 5967571 -221557007 - L2 LINE L2 0 3272 3005 346 262 98 8 chr3 5967592 5967714 -221556864 - MER94 DNA DNA -1 133 1 473 305 145 15 chr3 5969779 5970041 -221554537 - MER102b DNA MER1_type -3 338 43 2338 90 0 7 chr3 5970310 5970620 -221553958 + AluSx SINE Alu 1 308 -4 7082 159 33 43 chr3 5972302 5974749 -221549829 + L1MA6 LINE L1 3791 6214 -86 2215 119 43 27 chr3 5974849 5975218 -221549360 - THE1C LTR MaLR 0 375 1 225 344 47 0 chr3 5975712 5975776 -221548802 + L2 LINE L2 3114 3180 -92 186 137 68 14 chr3 5975855 5975928 -221548650 + GA-rich Low_complexity Low_complexity 2 78 0 2309 112 0 7 chr3 5975960 5976263 -221548315 - AluSx SINE Alu -11 301 1 371 300 106 11 chr3 5976697 5976877 -221547701 - MIR SINE MIR 0 262 66 460 250 75 42 chr3 5977073 5977097 -221547481 + LTR33 LTR ERVL 3 25 -496 2001 142 44 33 chr3 5977097 5977457 -221547121 + THE1B LTR MaLR 1 364 0 460 250 75 42 chr3 5977457 5977644 -221546934 + LTR33 LTR ERVL 25 221 -300 270 56 0 0 chr3 5977707 5977743 -221546835 + (TC)n Simple_repeat Simple_repeat 1 36 0 2725 141 16 22 chr3 5977887 5978397 -221546181 + L1MA7 LINE L1 5613 6119 -172 316 317 178 26 chr3 5978984 5979214 -221545364 - L1MC4a LINE L1 -1928 5880 5616 10570 44 3 0 chr3 5980650 5982728 -221541850 + L1PA6 LINE L1 4066 6150 -4 1279 143 33 8 chr3 5982728 5982973 -221541605 + MER45B DNA AcHobo 790 1040 0 348 289 0 10 chr3 5982988 5983085 -221541493 - MER117 DNA MER1_type -34 163 68 334 390 45 35 chr3 5983900 5984303 -221540275 - L2 LINE L2 -585 2729 2323 742 234 6 12 chr3 5984374 5984541 -221540037 - MIR SINE MIR -23 239 74 10042 45 6 10 chr3 5984545 5985895 -221538683 - L1P LINE L1 -758 5388 4044 307 358 80 12 chr3 5986241 5986403 -221538175 - MIR SINE MIR -56 206 34 734 165 0 24 chr3 5986561 5986679 -221537899 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 5986679 5986720 -221537858 + (CA)n Simple_repeat Simple_repeat 2 42 0 550 246 71 28 chr3 5987580 5987661 -221536917 + MER33 DNA MER1_type 1 77 -2508 1868 189 38 53 chr3 5987661 5988111 -221536467 + LTR47B LTR ERVL 1 443 0 550 246 71 28 chr3 5988111 5988240 -221536338 + MER33 DNA MER1_type 77 220 -104 432 0 0 0 chr3 5988244 5988292 -221536286 + (TA)n Simple_repeat Simple_repeat 2 49 0 7744 6 0 0 chr3 5988296 5989386 -221535192 - L1HS LINE L1 0 6155 5066 2083 26 0 8 chr3 5989382 5989646 -221534932 + L1P LINE L1 3581 3842 -2304 * 1371 221 3 3 chr3 5989788 5990073 -221534505 - AluSp SINE Alu -28 285 1 363 180 0 0 chr3 5991557 5991646 -221532932 - Charlie5 DNA MER1_type -50 2562 2474 13408 45 1 3 chr3 5991650 5993411 -221531167 - L1P LINE L1 -1075 5071 3316 232 206 38 0 chr3 5993553 5993684 -221530894 + C-rich Low_complexity Low_complexity 3 138 0 2020 213 59 6 chr3 5993692 5994231 -221530347 - L1MB7 LINE L1 -14 6170 5603 306 206 0 16 chr3 5994234 5994297 -221530281 + L1MCa LINE L1 2006 2067 -4359 1497 183 59 7 chr3 5994302 5994575 -221530003 - AluJo SINE Alu -25 287 1 333 159 95 0 chr3 5994575 5994638 -221529940 - L1MB7 LINE L1 -554 5620 5552 806 313 57 32 chr3 5994743 5995149 -221529429 + LTR16A LTR ERVL 1 416 -34 1512 159 12 12 chr3 5995577 5995828 -221528750 + AluJo SINE Alu 13 263 -49 495 0 0 0 chr3 5995845 5995900 -221528678 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 269 339 110 9 chr3 5995956 5996065 -221528513 - MIR3 SINE MIR -3 205 86 183 80 0 0 chr3 5996915 5996940 -221527638 + (TG)n Simple_repeat Simple_repeat 1 25 0 274 44 22 22 chr3 5996940 5996985 -221527593 + (GA)n Simple_repeat Simple_repeat 2 46 0 205 204 23 0 chr3 5996985 5997029 -221527549 + GA-rich Low_complexity Low_complexity 5 49 0 407 325 20 24 chr3 5997221 5997406 -221527172 + MIR SINE MIR 52 235 -27 1089 41 75 0 chr3 5998042 5998189 -221526389 + L1PA4 LINE L1 5992 6149 -6 186 43 0 0 chr3 5998467 5998490 -221526088 + (CA)n Simple_repeat Simple_repeat 2 24 0 253 376 86 4 chr3 5998575 5998766 -221525812 + MIR3 SINE MIR 2 204 -58 195 42 0 0 chr3 5998849 5998873 -221525705 + (A)n Simple_repeat Simple_repeat 1 24 0 6557 22 0 53 chr3 5998920 5999801 -221524777 - L1PA3 LINE L1 0 6155 5322 * 15777 32 3 0 chr3 5999798 6001782 -221522796 + L1PA3 LINE L1 3309 5298 -848 2237 106 3 13 chr3 6002204 6002515 -221522063 - AluSx SINE Alu -4 308 1 237 366 60 25 chr3 6003650 6003885 -221520693 - L2 LINE L2 -221 3051 2809 1144 242 104 41 chr3 6004441 6004929 -221519649 + MLT1K LTR MaLR 12 530 -58 957 195 91 0 chr3 6006304 6006525 -221518053 - MLT1D LTR MaLR -1 504 264 1001 156 25 0 chr3 6006614 6006774 -221517804 - AluSg/x SINE Alu -12 298 135 343 284 74 14 chr3 6006850 6006998 -221517580 + Charlie8 DNA MER1_type 5 161 -2256 23 33 0 0 chr3 6007595 6007625 -221516953 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr3 6008078 6008101 -221516477 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 40643 35 22 1 chr3 6008101 6014118 -221510460 - L1PA2 LINE L1 -11 6144 1 21 0 0 0 chr3 6014913 6014934 -221509644 + AT_rich Low_complexity Low_complexity 1 21 0 279 79 0 0 chr3 6014987 6015025 -221509553 + (TG)n Simple_repeat Simple_repeat 2 39 0 1459 156 44 10 chr3 6015307 6015602 -221508976 - Tigger1 DNA MER2_type 0 2418 2114 772 133 67 0 chr3 6015587 6015722 -221508856 + Tigger1 DNA MER2_type 941 1084 -1334 * 10438 139 46 38 chr3 6015732 6017197 -221507381 - Tigger1 DNA MER2_type -296 2122 632 1638 149 30 11 chr3 6017197 6017466 -221507112 - AluSx SINE Alu -38 274 1 10438 139 46 38 chr3 6017466 6018095 -221506483 - Tigger1 DNA MER2_type -1786 632 10 264 368 18 18 chr3 6019412 6019526 -221505052 - MIR SINE MIR -115 147 34 2282 112 7 0 chr3 6020667 6020972 -221503606 + AluSg SINE Alu 1 307 -3 26332 113 21 16 chr3 6020974 6025301 -221499277 + L1P LINE L1 11 4362 -1784 1469 213 68 24 chr3 6025331 6025712 -221498866 + LTR9 LTR ERV1 215 612 0 338 357 61 5 chr3 6025775 6025977 -221498601 - MIR SINE MIR -30 232 20 31 82 0 0 chr3 6026496 6026569 -221498009 + AT_rich Low_complexity Low_complexity 1 73 0 269 317 99 5 chr3 6026630 6026832 -221497746 - L1ME LINE L1 -289 5832 5612 13436 84 8 0 chr3 6026961 6029569 -221495009 + L1PA7 LINE L1 3509 6138 -16 2814 174 40 10 chr3 6029573 6030752 -221493826 + L1MC1 LINE L1 4992 6321 -12 195 42 0 0 chr3 6030752 6030776 -221493802 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 658 182 0 0 chr3 6030783 6030893 -221493685 - FLAM_A SINE Alu -32 110 1 1196 215 34 4 chr3 6031179 6031412 -221493166 + AluJb SINE Alu 50 289 -23 886 316 149 25 chr3 6031875 6032398 -221492180 + L2 LINE L2 2154 2741 -573 208 383 0 54 chr3 6032515 6032682 -221491896 + L2 LINE L2 2897 3054 -218 26 30 0 0 chr3 6033085 6033118 -221491460 + AT_rich Low_complexity Low_complexity 1 33 0 305 254 175 26 chr3 6033118 6033232 -221491346 - MIR3 SINE MIR -40 168 38 356 362 8 8 chr3 6036000 6036127 -221488451 - MIR3 SINE MIR -6 202 76 2644 219 95 37 chr3 6036474 6037229 -221487349 + MER21B LTR ERV1 13 811 -52 1909 167 10 6 chr3 6037323 6037634 -221486944 - AluJo SINE Alu 0 312 1 548 322 70 35 chr3 6037742 6037941 -221486637 - MIR SINE MIR -1 261 56 234 345 84 28 chr3 6038346 6038488 -221486090 + MIR SINE MIR 6 155 -107 407 269 156 19 chr3 6039226 6039438 -221485140 + L2 LINE L2 2804 3044 -228 494 261 106 6 chr3 6039953 6040133 -221484445 + L2 LINE L2 3114 3311 -2 840 217 33 5 chr3 6040285 6040469 -221484109 + MER5A DNA MER1_type 1 189 0 330 302 86 7 chr3 6040586 6040725 -221483853 + MIR SINE MIR 2 151 -111 2316 110 0 3 chr3 6040797 6041107 -221483471 + AluSc SINE Alu 1 309 0 265 321 46 9 chr3 6041128 6041237 -221483341 - MIR SINE MIR -2 260 148 266 202 95 24 chr3 6042351 6042435 -221482143 - MLT1K LTR MaLR -7 581 492 410 325 7 13 chr3 6043419 6043573 -221481005 - MIR SINE MIR -109 153 1 736 295 13 30 chr3 6043887 6044121 -221480457 - MIR SINE MIR -19 243 14 191 309 119 8 chr3 6044429 6044555 -221480023 + MIR SINE MIR 62 201 -7 241 243 121 43 chr3 6045119 6045259 -221479319 - L1ME4a LINE L1 -16 6105 5955 276 223 88 34 chr3 6045374 6045522 -221479056 - L1ME4a LINE L1 -1 6120 5965 484 259 0 36 chr3 6045635 6045747 -221478831 + L2 LINE L2 3165 3272 0 270 0 0 0 chr3 6045908 6045938 -221478640 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 273 18 6 chr3 6046530 6046695 -221477883 - MIR3 SINE MIR -9 199 33 227 190 17 0 chr3 6046772 6046830 -221477748 + GA-rich Low_complexity Low_complexity 4 62 0 527 294 43 27 chr3 6047486 6047670 -221476908 - MER5A DNA MER1_type -2 187 1 478 267 47 34 chr3 6047902 6048113 -221476465 + MIR3 SINE MIR 10 223 -39 22 35 0 0 chr3 6049039 6049068 -221475510 + AT_rich Low_complexity Low_complexity 1 29 0 802 166 18 31 chr3 6049072 6049235 -221475343 - MLT1B LTR MaLR -45 345 185 40 0 0 0 chr3 6049623 6049663 -221474915 + AT_rich Low_complexity Low_complexity 1 40 0 366 0 56 0 chr3 6049812 6049866 -221474712 + (TA)n Simple_repeat Simple_repeat 1 57 0 29494 100 15 7 chr3 6049868 6055602 -221468976 - L1PA7 LINE L1 -16 6453 648 363 202 0 24 chr3 6055600 6055684 -221468894 - L1ME LINE L1 -654 5788 5707 * 428 281 17 6 chr3 6055717 6055895 -221468683 - L1ME LINE L1 -958 5468 5289 1396 83 10 0 chr3 6055906 6056111 -221468467 + L1PA13 LINE L1 5855 6061 -102 400 70 0 0 chr3 6056111 6056168 -221468410 - MLT2B1 LTR ERVL 0 520 464 326 183 42 0 chr3 6056173 6056244 -221468334 + L1MCa LINE L1 1995 2068 -4358 2750 111 15 0 chr3 6056257 6056664 -221467914 - MLT2A2 LTR ERVL -40 413 1 607 102 51 0 chr3 6056666 6056764 -221467814 + L1PA13 LINE L1 6059 6161 -2 1171 237 95 43 chr3 6056764 6057184 -221467394 - L1ME LINE L1 -1162 5264 4800 2367 97 0 0 chr3 6057184 6057474 -221467104 + AluSx SINE Alu 1 290 -22 1171 237 95 43 chr3 6057474 6057673 -221466905 - L1ME LINE L1 -1626 4800 4613 297 347 56 0 chr3 6057878 6058022 -221466556 - MIR3 SINE MIR -3 205 54 771 224 106 8 chr3 6058249 6058495 -221466083 + L1M4 LINE L1 3504 3773 -2373 * 5047 181 48 50 chr3 6058494 6059739 -221464839 - L1ME LINE L1 -5143 1283 41 2732 241 65 2 chr3 6059739 6060572 -221464006 + L1ME1 LINE L1 3819 4703 -1443 12479 170 29 10 chr3 6060575 6061934 -221462644 + L1MA3 LINE L1 13 1345 -6220 1229 167 121 74 chr3 6061934 6062364 -221462214 - LTR7 LTR ERV1 0 450 1 12479 170 29 10 chr3 6062364 6064640 -221459938 + L1MA3 LINE L1 1345 4405 -3160 5957 136 35 7 chr3 6064639 6066386 -221458192 + L1MA3 LINE L1 5939 7724 0 * 3321 214 64 36 chr3 6066388 6066594 -221457984 + L1ME1 LINE L1 4699 4898 -1268 3012 166 10 53 chr3 6066594 6067173 -221457405 - MLT2B3 LTR ERVL 0 554 1 3321 214 64 36 chr3 6067173 6068383 -221456195 + L1ME1 LINE L1 4898 6157 -9 1557 142 59 4 chr3 6069977 6070216 -221454362 + AluJb SINE Alu 3 254 -58 1682 264 64 38 chr3 6070439 6071076 -221453502 - MER76 LTR ERV -34 654 1 323 289 29 0 chr3 6072662 6072766 -221451812 - MIR SINE MIR 0 262 156 770 210 59 0 chr3 6073135 6073321 -221451257 - MER3 DNA MER1_type -12 197 1 619 322 58 37 chr3 6073426 6073667 -221450911 - MIR SINE MIR 0 262 18 22 0 0 0 chr3 6073771 6073793 -221450785 + AT_rich Low_complexity Low_complexity 1 22 0 727 240 84 51 chr3 6073805 6074101 -221450477 - MER21B LTR ERV1 -150 713 408 670 196 37 0 chr3 6074129 6074292 -221450286 - MER3 DNA MER1_type -87 122 1 651 264 94 58 chr3 6074473 6074833 -221449745 - MER21B LTR ERV1 -485 378 6 200 241 17 0 chr3 6074884 6074942 -221449636 + (TA)n Simple_repeat Simple_repeat 1 59 0 434 317 72 24 chr3 6074963 6075130 -221449448 - MIR3 SINE MIR -11 197 23 219 286 50 101 chr3 6075176 6075414 -221449164 + L2 LINE L2 2832 3057 -215 772 304 206 19 chr3 6075525 6075986 -221448592 + L2 LINE L2 2305 2851 -463 683 286 161 23 chr3 6076199 6076541 -221448037 + L2 LINE L2 2925 3313 0 297 301 150 0 chr3 6076546 6076659 -221447919 + L2 LINE L2 3137 3266 -6 257 178 0 0 chr3 6076689 6076734 -221447844 + MIR SINE MIR 81 125 -137 274 167 61 0 chr3 6078371 6078437 -221446141 - MER116 DNA Mariner -10 70 1 884 266 40 4 chr3 6078546 6078772 -221445806 - MIR SINE MIR -27 235 2 877 123 7 32 chr3 6078903 6079057 -221445521 + L1MC1 LINE L1 5979 6128 -205 1058 89 0 7 chr3 6079061 6079196 -221445382 + AluSc SINE Alu 155 288 -21 1220 130 28 14 chr3 6079196 6079411 -221445167 + L1MC1 LINE L1 6116 6333 0 391 279 131 25 chr3 6079820 6079942 -221444636 - L2 LINE L2 -1 3271 3137 1775 179 3 0 chr3 6079995 6080292 -221444286 - AluJo SINE Alu -14 298 1 2161 114 7 3 chr3 6082430 6082728 -221441850 + AluSx SINE Alu 1 299 -13 614 230 14 7 chr3 6083008 6083156 -221441422 + AluSc SINE Alu 132 280 -29 2144 152 0 0 chr3 6083338 6083648 -221440930 - AluSx SINE Alu 0 312 3 1553 160 4 30 chr3 6083659 6083928 -221440650 - AluSx SINE Alu -2 310 49 190 196 179 0 chr3 6084935 6084991 -221439587 + MIR SINE MIR 118 183 -79 240 87 43 58 chr3 6085384 6085453 -221439125 + (TATAA)n Simple_repeat Simple_repeat 3 70 0 626 290 127 35 chr3 6085717 6086031 -221438547 - MER115 DNA AcHobo -1 692 350 682 301 30 15 chr3 6086166 6086365 -221438213 - MIR3 SINE MIR -3 205 4 1090 184 0 0 chr3 6086949 6087123 -221437455 - AluJb SINE Alu -8 304 131 333 0 0 0 chr3 6087123 6087160 -221437418 + (TG)n Simple_repeat Simple_repeat 2 38 0 35346 91 8 7 chr3 6087160 6093285 -221431293 - L1PA6 LINE L1 -22 6132 1 727 153 0 58 chr3 6093292 6093429 -221431149 - AluSq/x SINE Alu -184 129 1 2482 76 0 0 chr3 6093466 6093769 -221430809 - AluY SINE Alu -8 303 1 5414 67 3 0 chr3 6093835 6094557 -221430021 - L1PA7 LINE L1 -32 6122 5399 3972 98 12 33 chr3 6094557 6095232 -221429346 + L1PA7 LINE L1 4728 5388 -758 742 234 6 12 chr3 6095236 6095403 -221429175 + MIR SINE MIR 74 239 -23 334 390 45 35 chr3 6095474 6095877 -221428701 + L2 LINE L2 2323 2729 -585 24 0 0 0 chr3 6096306 6096330 -221428248 + AT_rich Low_complexity Low_complexity 1 24 0 1103 201 20 24 chr3 6097019 6097312 -221427266 - L1M4 LINE L1 -1168 4978 4687 414 286 118 12 chr3 6097406 6097567 -221427011 - MER5B DNA MER1_type 0 178 1 1040 214 27 18 chr3 6097589 6097809 -221426769 - MER58A DNA MER1_type -1 223 2 1466 202 106 32 chr3 6098185 6098620 -221425958 - MLT1C LTR MaLR 0 467 1 596 286 94 5 chr3 6098996 6099209 -221425369 - MIR SINE MIR -5 257 26 1133 104 15 157 chr3 6100155 6100458 -221424120 + LTR12 LTR ERV1 1 1982 -456 337 75 0 0 chr3 6100519 6100572 -221424006 + LTR12 LTR ERV1 233 285 -429 335 194 0 0 chr3 6100573 6100645 -221423933 + LTR30 LTR ERV1 553 624 -98 710 142 64 79 chr3 6100645 6100809 -221423769 + LTR12 LTR ERV1 301 483 -231 * 17436 118 16 11 chr3 6100785 6103831 -221420747 + HERV9 LTR ERV1 55 3122 -5277 432 303 70 7 chr3 6104084 6104226 -221420352 + MIR3 SINE MIR 4 154 -54 2922 3 0 0 chr3 6104367 6104678 -221419900 - AluYa5 SINE Alu 0 311 1 471 155 0 0 chr3 6104720 6104804 -221419774 + CT-rich Low_complexity Low_complexity 3 86 0 23349 127 21 8 chr3 6105236 6107644 -221416934 + L1M1 LINE L1 13 2483 -5082 1935 128 0 0 chr3 6107644 6107901 -221416677 + AluSx SINE Alu 45 301 -11 23349 127 21 8 chr3 6107901 6108978 -221415600 + L1M1 LINE L1 2483 3544 -4021 1131 113 38 0 chr3 6108973 6109159 -221415419 + L1M1 LINE L1 3035 3227 -4338 * 3369 186 13 55 chr3 6109132 6109903 -221414675 + L1M1 LINE L1 3538 4276 -3289 278 303 34 84 chr3 6109949 6110068 -221414510 + L2 LINE L2 3134 3246 -26 22 35 0 0 chr3 6111284 6111313 -221413265 + AT_rich Low_complexity Low_complexity 1 29 0 372 301 24 0 chr3 6111661 6111744 -221412834 - L2 LINE L2 -38 3275 3191 284 295 78 66 chr3 6111808 6111974 -221412604 + MIR3 SINE MIR 19 186 -22 262 282 14 0 chr3 6112153 6112224 -221412354 - MLT1K LTR MaLR -349 239 168 492 280 126 6 chr3 6112390 6112565 -221412013 - LTR67 LTR ERVL -9 548 353 220 156 0 22 chr3 6113429 6113474 -221411104 + L2 LINE L2 3270 3313 0 637 301 59 35 chr3 6113476 6113719 -221410859 + MIR SINE MIR 3 258 -4 302 317 49 28 chr3 6113916 6114058 -221410520 + L2 LINE L2 2932 3076 -196 34 24 0 0 chr3 6114282 6114323 -221410255 + AT_rich Low_complexity Low_complexity 1 41 0 1676 193 7 16 chr3 6114625 6114931 -221409647 + AluJo SINE Alu 1 303 -9 369 78 0 0 chr3 6114983 6115034 -221409544 - L1MA8 LINE L1 -25 6266 6216 1651 177 0 16 chr3 6115548 6115858 -221408720 + AluJb SINE Alu 1 305 -7 1620 117 36 0 chr3 6116314 6116536 -221408042 - MER30 DNA MER1_type 0 230 1 297 0 0 0 chr3 6116540 6116551 -221408027 + (TG)n Simple_repeat Simple_repeat 1 44 0 297 0 0 0 chr3 6116551 6116584 -221407994 + (TG)n Simple_repeat Simple_repeat 2 34 0 321 311 0 0 chr3 6116614 6116704 -221407874 - L1MC4 LINE L1 -1339 6703 6614 273 269 99 14 chr3 6116710 6116851 -221407727 + L1MC4 LINE L1 6614 6766 -1276 340 276 16 0 chr3 6116851 6116974 -221407604 + (TA)n Simple_repeat Simple_repeat 1 125 0 1552 165 16 41 chr3 6117452 6117574 -221407004 + AluJo SINE Alu 1 125 -187 1891 120 49 7 chr3 6117574 6117858 -221406720 - AluSq SINE Alu -17 296 1 1552 165 16 41 chr3 6117858 6118051 -221406527 + AluJo SINE Alu 125 308 -4 247 300 65 47 chr3 6118527 6118697 -221405881 + L3 LINE CR1 1346 1518 -59 778 294 23 23 chr3 6119373 6119594 -221404984 + MER58A DNA MER1_type 4 224 0 193 289 26 53 chr3 6120634 6120710 -221403868 + MIR3 SINE MIR 103 176 -32 3809 9 12 5 chr3 6120727 6121158 -221403420 - L1PA4 LINE L1 -420 5735 5302 3905 40 0 0 chr3 6121158 6121602 -221402976 + L1PA4 LINE L1 5711 6155 0 245 314 95 0 chr3 6122576 6122745 -221401833 + L3 LINE CR1 1231 1415 -162 308 250 25 12 chr3 6122794 6122874 -221401704 - L2 LINE L2 0 3313 3233 2333 78 20 0 chr3 6122924 6123220 -221401358 - AluY SINE Alu -9 302 1 1624 160 87 3 chr3 6123871 6124158 -221400420 + AluJb SINE Alu 1 311 -1 383 312 153 0 chr3 6124195 6124352 -221400226 - MER5A DNA MER1_type 0 189 9 289 213 277 32 chr3 6124350 6124505 -221400073 + MIR3 SINE MIR 16 208 0 * 220 319 92 17 chr3 6125631 6125750 -221398828 - L2 LINE L2 -1 3271 3144 195 265 0 20 chr3 6126028 6126077 -221398501 + MER5B DNA MER1_type 2 49 -129 257 0 30 0 chr3 6126435 6126468 -221398110 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 869 183 0 0 chr3 6126472 6126609 -221397969 - FRAM SINE Alu -27 149 13 26 0 0 0 chr3 6127399 6127425 -221397153 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 6127547 6127568 -221397010 + AT_rich Low_complexity Low_complexity 1 21 0 241 117 83 83 chr3 6128485 6128545 -221396033 + MER63C DNA MER1_type 1 60 -870 3141 191 42 13 chr3 6128928 6129565 -221395013 + MER63C DNA MER1_type 68 723 -207 1465 256 43 104 chr3 6129585 6130164 -221394414 - MER77 LTR ERV1 -4 601 58 2489 216 43 13 chr3 6130190 6130815 -221393763 - L1M4 LINE L1 -1541 4605 3962 24542 41 2 2 chr3 6130815 6134446 -221390132 - L1PA5 LINE L1 0 6154 2524 657 232 21 0 chr3 6134447 6134589 -221389989 - ERVL LTR ERVL -5072 692 548 3607 83 0 7 chr3 6134589 6135036 -221389542 - MLT2A1 LTR ERVL 0 444 1 43708 82 5 9 chr3 6135036 6140714 -221383864 - HERVL-A1 LTR ERVL 0 5654 1 3601 89 0 11 chr3 6140714 6141163 -221383415 - MLT2A1 LTR ERVL 0 444 1 257 326 11 0 chr3 6141163 6141255 -221383323 - ERVL LTR ERVL -5123 531 439 254 260 177 21 chr3 6141293 6141485 -221383093 - L1MC4 LINE L1 -962 7080 6859 511 301 103 66 chr3 6142415 6142478 -221382100 + L3 LINE CR1 278 337 -1240 1647 205 0 7 chr3 6142478 6142776 -221381802 + AluJb SINE Alu 1 296 -16 511 301 103 66 chr3 6142776 6143031 -221381547 + L3 LINE CR1 337 608 -969 1103 182 35 5 chr3 6143095 6143298 -221381280 + MER3 DNA MER1_type 1 209 0 199 359 60 17 chr3 6143421 6143538 -221381040 - MIR SINE MIR -68 140 19 410 328 23 45 chr3 6144647 6144824 -221379754 - MIR3 SINE MIR -35 173 1 429 310 117 29 chr3 6145213 6145494 -221379084 + L2 LINE L2 3008 3313 0 1765 172 6 19 chr3 6145871 6146185 -221378393 - L1MB5 LINE L1 0 6174 5865 1069 154 22 66 chr3 6146189 6146288 -221378290 - L1MB5 LINE L1 -368 5806 5704 3257 100 22 2 chr3 6146288 6146736 -221377842 + L1PA13 LINE L1 5703 6163 0 1069 154 22 66 chr3 6146736 6146863 -221377715 - L1MB5 LINE L1 -470 5704 5590 211 329 12 12 chr3 6147123 6147205 -221377373 + MIR SINE MIR 59 140 -122 326 306 36 0 chr3 6147249 6147360 -221377218 - MIR3 SINE MIR -9 199 85 289 356 10 10 chr3 6147527 6147631 -221376947 - MIR SINE MIR -112 150 47 401 357 51 13 chr3 6148141 6148298 -221376280 - L2 LINE L2 -6 3266 3104 306 50 0 0 chr3 6148716 6148756 -221375822 + (TG)n Simple_repeat Simple_repeat 1 40 0 378 293 110 12 chr3 6148857 6149021 -221375557 - L2 LINE L2 -227 3045 2866 347 326 214 29 chr3 6149302 6149887 -221374691 - L2 LINE L2 -838 2476 1784 290 235 12 47 chr3 6149900 6149985 -221374593 - HAL1 LINE L1 -6 2501 2420 * 524 236 88 27 chr3 6149974 6150237 -221374341 - HAL1 LINE L1 -1254 1253 975 216 276 169 34 chr3 6150716 6150924 -221373654 - MIR SINE MIR -11 251 9 22 0 0 0 chr3 6151257 6151279 -221373299 + AT_rich Low_complexity Low_complexity 1 22 0 446 259 60 55 chr3 6152199 6152400 -221372178 + MIR SINE MIR 14 215 -47 3705 166 78 46 chr3 6152794 6153553 -221371025 - LTR1 LTR ERV1 -2 783 1 1312 77 4 170 chr3 6154841 6154929 -221369649 + L1MA4A LINE L1 6067 6168 -135 1540 186 18 7 chr3 6154929 6155204 -221369374 - AluJo SINE Alu -32 280 3 1312 77 4 170 chr3 6155204 6155374 -221369204 + L1MA4A LINE L1 6168 6282 -21 375 249 16 124 chr3 6156595 6156701 -221367877 + MER112 DNA MER1_type 1 78 -182 2046 88 0 76 chr3 6156701 6157018 -221367560 - AluSc SINE Alu -16 293 1 375 249 16 124 chr3 6157018 6157104 -221367474 + MER112 DNA MER1_type 78 172 -88 1285 194 8 25 chr3 6157109 6157346 -221367232 - MER8 DNA MER2_type 0 239 7 5556 32 0 2 chr3 6157449 6158064 -221366514 - L1PA5 LINE L1 0 6154 5541 18850 44 2 0 chr3 6158064 6160347 -221364231 + L1P LINE L1 683 2968 -3178 259 132 0 0 chr3 6160357 6160395 -221364183 + MER112 DNA MER1_type 223 260 0 618 250 0 15 chr3 6160665 6160797 -221363781 - FRAM SINE Alu -55 121 1 230 319 11 85 chr3 6160945 6161039 -221363539 + MIR3 SINE MIR 12 98 -110 307 317 178 26 chr3 6162284 6162514 -221362064 + L1MC4a LINE L1 5616 5880 -1928 2971 141 16 22 chr3 6163101 6163611 -221360967 - L1MA7 LINE L1 -172 6119 5613 270 56 0 0 chr3 6163755 6163791 -221360787 + (GA)n Simple_repeat Simple_repeat 1 36 0 527 250 75 42 chr3 6163854 6164041 -221360537 - LTR33 LTR ERVL -300 221 25 2169 142 44 33 chr3 6164041 6164401 -221360177 - THE1B LTR MaLR 0 364 1 527 250 75 42 chr3 6164401 6164425 -221360153 - LTR33 LTR ERVL -496 25 3 365 294 106 11 chr3 6164621 6164801 -221359777 + MIR SINE MIR 66 262 0 2274 116 0 7 chr3 6165235 6165538 -221359040 + AluSx SINE Alu 1 301 -11 186 137 68 14 chr3 6165570 6165643 -221358935 + CT-rich Low_complexity Low_complexity 2 78 0 224 344 47 0 chr3 6165722 6165786 -221358792 - L2 LINE L2 -92 3180 3114 2392 119 43 27 chr3 6166280 6166649 -221357929 + THE1C LTR MaLR 1 375 0 7818 158 33 43 chr3 6166749 6169196 -221355382 - L1MA6 LINE L1 -86 6214 3791 2345 90 0 7 chr3 6170879 6171189 -221353389 - AluSx SINE Alu -4 308 1 573 305 145 15 chr3 6171458 6171720 -221352858 + MER102b DNA MER1_type 43 338 -3 234 212 67 30 chr3 6173137 6173302 -221351276 + (CAAA)n Simple_repeat Simple_repeat 3 173 0 617 196 96 60 chr3 6173452 6173651 -221350927 - L1M4 LINE L1 -4871 1671 1466 1693 176 3 28 chr3 6173657 6173975 -221350603 - AluJo SINE Alu -2 310 1 198 0 0 0 chr3 6173976 6173998 -221350580 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 6173998 6174020 -221350558 + AT_rich Low_complexity Low_complexity 1 22 0 483 184 11 152 chr3 6174301 6174514 -221350064 + L1MC5 LINE L1 7545 7712 -249 1731 164 45 3 chr3 6174514 6174800 -221349778 - AluJb SINE Alu -14 298 1 483 184 11 152 chr3 6174800 6174863 -221349715 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 6174906 6175208 -221349370 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 6175385 6175535 -221349043 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 6176337 6176429 -221348149 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 6176441 6176582 -221347996 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 6178233 6178478 -221346100 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 6178561 6178663 -221345915 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 6178971 6178995 -221345583 + AT_rich Low_complexity Low_complexity 1 24 0 1925 140 61 3 chr3 6180088 6180381 -221344197 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 6180971 6181145 -221343433 - MIR SINE MIR -12 250 48 5216 56 0 2 chr3 6181160 6181768 -221342810 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 6181920 6182050 -221342528 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 6182629 6182900 -221341678 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 6182904 6183152 -221341426 + L3 LINE CR1 605 877 -700 236 315 65 0 chr3 6183210 6183318 -221341260 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 6183428 6183647 -221340931 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 6183683 6184185 -221340393 + L3 LINE CR1 1019 1527 -50 1996 98 4 25 chr3 6184827 6185123 -221339455 + AluSp SINE Alu 21 310 0 194 227 0 23 chr3 6185178 6185222 -221339356 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 6185716 6186018 -221338560 - AluJb SINE Alu -10 302 2 2135 127 0 13 chr3 6186705 6187020 -221337558 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr3 6187417 6187443 -221337135 + (CA)n Simple_repeat Simple_repeat 2 27 0 393 282 87 28 chr3 6188298 6188550 -221336028 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 6188560 6188641 -221335937 + L1MC/D LINE L1 5428 5508 -734 832 176 0 0 chr3 6188875 6189006 -221335572 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 6189018 6189319 -221335259 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 6189349 6189536 -221335042 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 6192149 6192184 -221332394 + AT_rich Low_complexity Low_complexity 1 35 0 1707 174 3 20 chr3 6192931 6193230 -221331348 + AluSx SINE Alu 1 294 -18 1980 125 59 0 chr3 6193849 6194136 -221330442 + AluSx SINE Alu 1 304 -8 230 132 26 0 chr3 6194145 6194183 -221330395 + MLT1B LTR MaLR 352 390 0 2855 141 7 16 chr3 6194425 6194865 -221329713 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 6195456 6195765 -221328813 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 6195881 6196033 -221328545 + L1MC5 LINE L1 7027 7178 -801 1839 150 0 14 chr3 6196033 6196320 -221328258 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 6196323 6196347 -221328231 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 6196347 6196417 -221328161 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 6196586 6196627 -221327951 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 218 44 118 chr3 6196636 6196777 -221327801 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 6196777 6197355 -221327223 + L1PA7 LINE L1 5579 6154 0 431 218 44 118 chr3 6197355 6197366 -221327212 + L1MC5 LINE L1 7460 7470 -491 2227 129 0 0 chr3 6197366 6197677 -221326901 + AluSx SINE Alu 1 311 -1 431 218 44 118 chr3 6197677 6197752 -221326826 + L1MC5 LINE L1 7470 7521 -440 1520 213 216 17 chr3 6197780 6198188 -221326390 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 6198226 6198521 -221326057 - L1MCa LINE L1 -4387 2039 1742 * 5045 189 45 19 chr3 6198517 6199144 -221325434 - L1MD1 LINE L1 -1 6241 5632 2122 125 0 3 chr3 6199144 6199455 -221325123 - AluSx SINE Alu -2 310 1 5045 189 45 19 chr3 6199455 6200732 -221323846 - L1MD1 LINE L1 -610 5632 4288 2267 96 0 10 chr3 6202432 6202733 -221321845 + AluSg SINE Alu 1 298 -12 261 98 0 0 chr3 6209323 6209364 -221315214 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 6209412 6209444 -221315134 + AT_rich Low_complexity Low_complexity 1 32 0 241 366 41 8 chr3 6210164 6210287 -221314291 - L2 LINE L2 -4 3268 3142 459 246 16 96 chr3 6210930 6211117 -221313461 + MIR SINE MIR 37 208 -54 1297 135 5 0 chr3 6212407 6212599 -221311979 - AluSg/x SINE Alu -6 306 114 629 201 14 21 chr3 6213860 6214004 -221310574 + Tigger3(Golem) DNA MER2_type 2886 3028 -1 1002 151 25 0 chr3 6214400 6214559 -221310019 + AluSg/x SINE Alu 120 282 -28 429 20 0 0 chr3 6214559 6214609 -221309969 + (CA)n Simple_repeat Simple_repeat 2 51 0 1538 156 101 0 chr3 6215083 6215397 -221309181 + MER2 DNA MER2_type 1 345 0 612 162 40 23 chr3 6221961 6222270 -221302308 + (TTAGGG)n Simple_repeat Simple_repeat 1 314 0 199 250 135 0 chr3 6222580 6222632 -221301946 + MIR SINE MIR 86 144 -118 2114 151 41 17 chr3 6223461 6223877 -221300701 - MSTB1 LTR MaLR -6 426 1 275 280 70 32 chr3 6224505 6224662 -221299916 - L1MC5 LINE L1 -91 7870 7708 2128 113 16 13 chr3 6225447 6225757 -221298821 + AluSx SINE Alu 2 312 0 216 323 0 15 chr3 6226176 6226241 -221298337 + MIR SINE MIR 186 249 -13 2410 97 0 0 chr3 6228409 6228719 -221295859 + AluSg SINE Alu 1 310 0 1299 185 37 54 chr3 6229257 6229555 -221295023 + AluJo SINE Alu 1 293 -19 271 315 61 42 chr3 6229764 6229929 -221294649 - L2 LINE L2 -17 3296 3129 253 244 0 13 chr3 6231065 6231143 -221293435 - MLT1B LTR MaLR -234 156 80 1907 120 0 7 chr3 6232365 6232639 -221291939 - AluSx SINE Alu -40 272 1 2370 113 49 0 chr3 6239413 6239759 -221284819 + THE1B LTR MaLR 2 364 0 565 99 0 55 chr3 6242346 6242437 -221282141 - AluSg/x SINE Alu -16 294 209 409 301 90 48 chr3 6242713 6243090 -221281488 + L1ME LINE L1 5259 5662 -459 2266 103 3 23 chr3 6243090 6243400 -221281178 + AluSx SINE Alu 3 306 -6 409 301 90 48 chr3 6243400 6243500 -221281078 + L1ME LINE L1 5662 5756 -365 363 303 113 33 chr3 6244292 6244479 -221280099 + MIR3 SINE MIR 2 203 -5 504 296 87 24 chr3 6246788 6246994 -221277584 - MIR SINE MIR 0 262 44 2165 119 6 16 chr3 6248363 6248536 -221276042 - AluSx SINE Alu -4 308 138 1932 124 72 0 chr3 6248536 6248707 -221275871 - AluSq SINE Alu -2 311 109 188 35 35 0 chr3 6248707 6248736 -221275842 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1932 124 72 0 chr3 6248736 6248854 -221275724 - AluSq SINE Alu -204 109 1 2165 119 6 16 chr3 6248854 6248991 -221275587 - AluSx SINE Alu -174 138 1 420 293 40 59 chr3 6248991 6249313 -221275265 - L1MCa LINE L1 -3863 2563 2242 520 271 50 14 chr3 6251584 6251768 -221272810 - MIR SINE MIR -6 256 68 191 253 36 96 chr3 6253374 6253457 -221271121 - L2 LINE L2 -2 3311 3234 438 220 47 27 chr3 6253996 6254146 -221270432 + CT-rich Low_complexity Low_complexity 5 157 0 905 83 61 8 chr3 6255983 6256115 -221268463 + MER85 DNA T2_type 1 139 0 922 76 8 23 chr3 6257209 6257341 -221267237 + AluY SINE Alu 56 185 -126 272 342 9 0 chr3 6257851 6257965 -221266613 + MIR3 SINE MIR 85 199 -9 21 0 0 0 chr3 6258732 6258753 -221265825 + GC_rich Low_complexity Low_complexity 1 21 0 505 231 12 0 chr3 6260646 6260819 -221263759 + (CAT)n Simple_repeat Simple_repeat 3 177 0 729 213 4 0 chr3 6260845 6261086 -221263492 + (CAT)n Simple_repeat Simple_repeat 1 242 0 33 0 0 0 chr3 6261737 6261770 -221262808 + AT_rich Low_complexity Low_complexity 1 33 0 584 203 8 17 chr3 6262930 6263048 -221261530 - FLAM_A SINE Alu -15 118 2 2121 111 4 0 chr3 6263193 6263509 -221261069 + AluSx SINE Alu 1 317 0 226 441 31 31 chr3 6263967 6264094 -221260484 + polypurine Low_complexity Low_complexity 5 131 0 403 138 25 25 chr3 6266855 6266935 -221257643 - AluS SINE Alu -223 80 1 332 43 22 0 chr3 6269278 6269324 -221255254 + (TAA)n Simple_repeat Simple_repeat 1 47 0 258 56 0 0 chr3 6269362 6269398 -221255180 + (TG)n Simple_repeat Simple_repeat 2 37 0 430 339 20 8 chr3 6271106 6271465 -221253113 + (TGGG)n Simple_repeat Simple_repeat 1 363 0 250 341 8 8 chr3 6271439 6271571 -221253007 + G-rich Low_complexity Low_complexity 5 136 0 * 652 204 97 62 chr3 6273037 6273213 -221251365 + AluJo SINE Alu 2 183 -129 2190 113 0 0 chr3 6274274 6274556 -221250022 - AluSq SINE Alu -31 282 1 16860 32 3 0 chr3 6275414 6277398 -221247180 - L1PA2 LINE L1 -848 5298 3309 7138 30 0 0 chr3 6277398 6278241 -221246337 + L1PA2 LINE L1 5322 6167 0 23 33 0 0 chr3 6278694 6278724 -221245854 + AT_rich Low_complexity Low_complexity 1 30 0 395 265 58 85 chr3 6279246 6279469 -221245109 - Charlie8 DNA MER1_type -2196 221 5 998 137 0 0 chr3 6279559 6279705 -221244873 + AluSg/x SINE Alu 155 300 -12 1053 195 91 0 chr3 6279794 6280015 -221244563 + MLT1D LTR MaLR 264 504 -1 1316 242 104 41 chr3 6281390 6281878 -221242700 - MLT1K LTR MaLR -58 530 12 2238 107 3 13 chr3 6283804 6284114 -221240464 + AluSx SINE Alu 1 307 -5 16860 32 3 0 chr3 6284536 6286520 -221238058 - L1PA8 LINE L1 -848 5298 3309 5901 95 0 34 chr3 6286520 6287398 -221237180 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 6287445 6287469 -221237109 + (T)n Simple_repeat Simple_repeat 1 24 0 201 404 43 14 chr3 6287599 6287740 -221236838 - MIR3 SINE MIR -58 150 6 186 43 0 0 chr3 6287828 6287851 -221236727 + (TG)n Simple_repeat Simple_repeat 2 24 0 1109 41 75 0 chr3 6288129 6288276 -221236302 - L1PA4 LINE L1 -6 6149 5992 360 315 20 27 chr3 6288912 6289061 -221235517 - MIR SINE MIR -27 235 88 205 204 23 0 chr3 6289289 6289333 -221235245 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 6289333 6289378 -221235200 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 6289378 6289403 -221235175 + (CA)n Simple_repeat Simple_repeat 1 25 0 238 339 110 9 chr3 6290253 6290362 -221234216 + MIR3 SINE MIR 86 205 -3 423 0 0 0 chr3 6290418 6290465 -221234113 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1515 159 12 12 chr3 6290482 6290733 -221233845 - AluJo SINE Alu -49 263 13 940 313 57 32 chr3 6291161 6291567 -221233011 - LTR16A LTR ERVL -34 416 1 355 155 84 28 chr3 6291664 6291735 -221232843 + L1MB7 LINE L1 5546 5620 -554 1491 183 59 7 chr3 6291735 6292008 -221232570 + AluJo SINE Alu 1 287 -25 369 162 0 0 chr3 6292008 6292076 -221232502 + (TA)n Simple_repeat Simple_repeat 1 68 0 2212 214 59 6 chr3 6292076 6292618 -221231960 + L1MB7 LINE L1 5600 6170 -14 622 176 16 0 chr3 6292626 6292937 -221231641 + G-rich Low_complexity Low_complexity 1 316 0 180 0 0 0 chr3 6293202 6293222 -221231356 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 256 324 124 0 chr3 6293463 6293608 -221230970 - MIR SINE MIR -14 248 86 332 322 91 15 chr3 6293924 6294123 -221230455 - LTR16A LTR ERVL -5 445 232 782 291 76 64 chr3 6294450 6294872 -221229706 - MLT1L LTR MaLR -188 427 1 191 299 15 15 chr3 6296242 6296309 -221228269 - MER5B DNA MER1_type -111 67 1 21 36 0 0 chr3 6296434 6296462 -221228116 + AT_rich Low_complexity Low_complexity 1 28 0 206 139 28 0 chr3 6296993 6297029 -221227549 + (CAT)n Simple_repeat Simple_repeat 2 38 0 476 215 38 51 chr3 6298056 6298214 -221226364 + MER5C DNA MER1_type 169 324 0 423 283 72 17 chr3 6298454 6298634 -221225944 + L1MC4a LINE L1 5710 5899 -1909 828 132 60 18 chr3 6299148 6299315 -221225263 + L1MA8 LINE L1 6113 6286 -5 1695 173 125 48 chr3 6299677 6299908 -221224670 - MLT1C LTR MaLR -1 466 254 360 0 0 0 chr3 6299908 6299948 -221224630 + (TG)n Simple_repeat Simple_repeat 2 41 0 1695 173 125 48 chr3 6299948 6300149 -221224429 - MLT1C LTR MaLR -213 254 1 214 351 9 27 chr3 6300292 6300403 -221224175 - L2 LINE L2 -613 2701 2593 416 264 88 0 chr3 6300501 6300626 -221223952 - MIR SINE MIR -66 196 61 2044 188 14 3 chr3 6302784 6303145 -221221433 - MLT1A1 LTR MaLR 0 365 1 1653 191 13 3 chr3 6303208 6303512 -221221066 + AluJb SINE Alu 1 307 -5 327 49 0 0 chr3 6303516 6303557 -221221021 + (GGA)n Simple_repeat Simple_repeat 3 43 0 260 231 132 25 chr3 6304433 6304554 -221220024 + L1ME4a LINE L1 5986 6119 -2 21 36 0 0 chr3 6304955 6304983 -221219595 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 6305280 6305314 -221219264 + AT_rich Low_complexity Low_complexity 1 34 0 929 172 84 0 chr3 6305998 6306201 -221218377 + Charlie1 DNA MER1_type 6 225 -2536 510 200 16 8 chr3 6306209 6306334 -221218244 + Charlie1 DNA MER1_type 2632 2757 -4 1795 203 120 0 chr3 6306404 6306822 -221217756 - MER119 DNA MER1_type -110 473 6 1802 111 0 24 chr3 6307630 6307883 -221216695 + AluSg SINE Alu 48 294 -16 297 262 171 37 chr3 6308388 6308552 -221216026 - MIR SINE MIR -70 192 7 190 253 191 43 chr3 6308637 6308799 -221215779 - L3b LINE CR1 -110 1473 1288 214 291 36 0 chr3 6308849 6308904 -221215674 + L2 LINE L2 3251 3307 -6 274 270 54 0 chr3 6309858 6309932 -221214646 - MER63 DNA MER1_type -5 1057 980 266 214 0 0 chr3 6309934 6309990 -221214588 - MER63 DNA MER1_type -311 750 695 334 303 40 59 chr3 6310037 6310189 -221214389 + MIR SINE MIR 104 252 -10 202 268 0 62 chr3 6310428 6310525 -221214053 + CT-rich Low_complexity Low_complexity 2 92 0 389 341 28 22 chr3 6313061 6313240 -221211338 + MIR SINE MIR 47 226 -36 453 216 20 0 chr3 6313254 6313356 -221211222 - MER3 DNA MER1_type -25 184 81 1273 181 3 100 chr3 6313357 6313677 -221210901 + AluJb SINE Alu 12 300 -12 2573 79 31 8 chr3 6315448 6315804 -221208774 - THE1B LTR MaLR 0 364 1 1250 212 24 44 chr3 6316478 6316775 -221207803 - AluJo SINE Alu -21 291 1 280 189 42 95 chr3 6318542 6318593 -221205985 + MIR SINE MIR 173 218 -44 1985 161 0 3 chr3 6318593 6318897 -221205681 + AluSx SINE Alu 1 303 -9 280 189 42 95 chr3 6318897 6318940 -221205638 + MIR SINE MIR 218 262 0 198 370 0 14 chr3 6318940 6319013 -221205565 - MIR SINE MIR -174 88 17 2304 157 0 42 chr3 6319055 6319489 -221205089 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr3 6320077 6320101 -221204477 + AT_rich Low_complexity Low_complexity 1 24 0 332 357 134 34 chr3 6320272 6321166 -221203412 - L2 LINE L2 -338 2976 1958 3598 117 43 23 chr3 6321166 6321764 -221202814 - MER4B LTR ERV1 0 610 1 332 357 134 34 chr3 6321764 6321926 -221202652 - L2 LINE L2 -1356 1958 1814 27 29 0 0 chr3 6322553 6322587 -221201991 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr3 6322596 6322634 -221201944 + GC_rich Low_complexity Low_complexity 1 38 0 2377 55 7 0 chr3 6323218 6323510 -221201068 - AluSp SINE Alu -19 294 1 271 258 15 0 chr3 6323627 6323693 -221200885 + MIR SINE MIR 87 153 -109 4412 109 24 46 chr3 6323815 6324166 -221200412 - MER4E LTR ERV1 0 766 409 2142 118 7 0 chr3 6324166 6324455 -221200123 - AluSx SINE Alu -21 291 1 4412 109 24 46 chr3 6324455 6324886 -221199692 - MER4E LTR ERV1 -357 409 1 362 252 63 9 chr3 6325068 6325179 -221199399 - L2 LINE L2 0 3313 3197 28 0 0 0 chr3 6325345 6325373 -221199205 + AT_rich Low_complexity Low_complexity 1 28 0 1428 155 78 42 chr3 6326824 6327108 -221197470 + AluJo SINE Alu 1 294 -18 183 382 0 0 chr3 6327310 6327365 -221197213 - MIR SINE MIR -204 58 4 229 314 117 22 chr3 6327591 6327728 -221196850 - MIR SINE MIR -58 204 55 2704 125 82 31 chr3 6327894 6328479 -221196099 - MER4B LTR ERV1 0 779 1 627 257 82 44 chr3 6328530 6328849 -221195729 - MLT1K LTR MaLR 0 588 258 1617 165 43 25 chr3 6328937 6329264 -221195314 - MER7A DNA MER2_type -14 332 2 892 175 56 12 chr3 6331631 6331791 -221192787 + AluJb SINE Alu 134 300 -12 1136 230 143 31 chr3 6332931 6333379 -221191199 + MLT1J LTR MaLR 1 498 -13 372 121 0 0 chr3 6334030 6334088 -221190490 + L1MB8 LINE L1 6113 6170 -8 22 70 0 0 chr3 6334786 6334829 -221189749 + AT_rich Low_complexity Low_complexity 1 43 0 2266 132 0 0 chr3 6334834 6335138 -221189440 + AluSx SINE Alu 1 304 -8 9834 53 11 0 chr3 6335142 6336392 -221188186 + HSMAR1 DNA Mariner 24 1287 0 785 161 0 0 chr3 6336470 6336594 -221187984 + FLAM_C SINE Alu 1 124 -9 361 238 34 17 chr3 6336790 6336937 -221187641 + MIR SINE MIR 69 260 -2 372 284 20 0 chr3 6337063 6337165 -221187413 + Zaphod DNA AcHobo 12 115 -3916 1841 202 46 12 chr3 6337196 6337677 -221186901 + L1MC3 LINE L1 3657 4153 -1993 4414 168 66 16 chr3 6337678 6337695 -221186883 + L1MC3 LINE L1 5273 5288 -2497 1997 152 7 0 chr3 6337695 6337992 -221186586 + AluSx SINE Alu 1 299 -13 4414 168 66 16 chr3 6337992 6338321 -221186257 + L1MC3 LINE L1 5288 5599 -2186 1695 174 142 12 chr3 6338321 6338729 -221185849 - LOR1b LTR ERV1 0 461 1 4414 168 66 16 chr3 6338729 6339426 -221185152 + L1MC3 LINE L1 5599 6369 -1416 480 170 76 82 chr3 6339426 6339597 -221184981 - LTR48 LTR ERV1 -4 783 614 1479 187 132 46 chr3 6339626 6340065 -221184513 - LTR48 LTR ERV1 -310 477 1 5899 140 39 94 chr3 6340081 6341541 -221183037 + L1MC3 LINE L1 6380 7759 -26 896 174 6 45 chr3 6341575 6341753 -221182825 + FRAM SINE Alu 1 171 -5 782 192 53 70 chr3 6341753 6341948 -221182630 + L1M3 LINE L1 5481 5686 -485 259 149 0 21 chr3 6341948 6341995 -221182583 + Alu SINE Alu 245 290 -12 782 192 53 70 chr3 6341995 6342125 -221182453 + L1M3 LINE L1 5686 5817 -354 * 1932 171 49 63 chr3 6342118 6342626 -221181952 + L1MB7 LINE L1 5676 6176 -8 243 227 0 0 chr3 6342626 6342692 -221181886 + GA-rich Low_complexity Low_complexity 5 70 0 825 260 96 14 chr3 6342728 6343009 -221181569 + Zaphod DNA AcHobo 154 457 -3574 234 197 212 0 chr3 6343027 6343093 -221181485 + Zaphod DNA AcHobo 584 663 -3368 * 971 191 221 13 chr3 6343092 6343389 -221181189 + Zaphod DNA AcHobo 3282 3640 -391 927 197 25 142 chr3 6343389 6343916 -221180662 - MER4C LTR ERV1 0 465 1 2257 146 28 8 chr3 6343925 6344282 -221180296 - THE1B LTR MaLR 0 364 1 386 301 7 0 chr3 6344331 6344467 -221180111 - MER4C-int LTR ERV1 -79 6519 6383 262 237 30 69 chr3 6344464 6344595 -221179983 - MER4C-int LTR ERV1 -175 6423 6298 * 329 185 0 25 chr3 6344595 6344676 -221179902 + (TATG)n Simple_repeat Simple_repeat 4 82 0 207 0 0 0 chr3 6344678 6344701 -221179877 + (CA)n Simple_repeat Simple_repeat 2 24 0 8705 136 52 22 chr3 6344703 6344952 -221179626 - MER4C-int LTR ERV1 -491 5840 5600 1720 134 0 0 chr3 6344952 6345191 -221179387 - AluSx SINE Alu -73 239 1 8705 136 52 22 chr3 6345191 6345592 -221178986 - MER4C-int LTR ERV1 -731 5600 5212 1875 174 0 10 chr3 6345592 6345890 -221178688 - AluSx SINE Alu -17 295 1 8705 136 52 22 chr3 6345890 6347004 -221177574 - MER4C-int LTR ERV1 -1118 5213 4022 1409 213 7 23 chr3 6347017 6347318 -221177260 + AluJb SINE Alu 15 310 -2 25 0 0 0 chr3 6347320 6347345 -221177233 + AT_rich Low_complexity Low_complexity 1 25 0 3206 185 61 98 chr3 6347345 6347416 -221177162 - MER4C-int LTR ERV1 -1382 3498 3426 2151 127 71 3 chr3 6347416 6347756 -221176822 - THE1B LTR MaLR -1 363 1 11360 92 7 29 chr3 6347756 6349371 -221175207 - THE1B-int LTR MaLR 0 1580 1 2252 124 31 6 chr3 6349371 6349726 -221174852 - THE1B LTR MaLR 0 364 1 3206 185 61 98 chr3 6349726 6350615 -221173963 - MER4C-int LTR ERV1 -1452 3428 2409 2125 123 0 13 chr3 6350615 6350923 -221173655 + AluSx SINE Alu 1 304 -8 3206 185 61 98 chr3 6350923 6351480 -221173098 - MER4C-int LTR ERV1 -2471 2409 1833 240 222 69 14 chr3 6351622 6351694 -221172884 - MER34C LTR ERV1 -355 230 155 2238 161 34 8 chr3 6351780 6352472 -221172106 + LTR1B LTR ERV1 1 816 -10 840 182 0 155 chr3 6352480 6352776 -221171802 - MER4C-int LTR ERV1 -4143 3394 3145 1201 196 94 65 chr3 6352858 6352915 -221171663 - MER4C-int LTR ERV1 -4568 1763 1709 1548 219 7 3 chr3 6352915 6353207 -221171371 + AluJo SINE Alu 1 293 -19 1201 196 94 65 chr3 6353207 6353551 -221171027 - MER4C-int LTR ERV1 -4622 1709 1350 516 159 122 97 chr3 6353641 6353756 -221170822 - MER4C-int LTR ERV1 -4933 1398 1287 358 250 0 0 chr3 6353756 6353828 -221170750 - tRNA-Glu-GAG tRNA tRNA -1 74 3 516 159 122 97 chr3 6353828 6354023 -221170555 - MER4C-int LTR ERV1 -5044 1287 994 717 234 77 19 chr3 6354480 6354732 -221169846 - MER4C-int LTR ERV1 -6162 436 79 2124 113 0 55 chr3 6354732 6355059 -221169519 + AluSg SINE Alu 1 309 -1 717 234 77 19 chr3 6355059 6355143 -221169435 - MER4C-int LTR ERV1 -6519 79 1 1015 199 37 135 chr3 6355149 6355661 -221168917 - MER4C LTR ERV1 -3 462 1 1177 223 28 3 chr3 6355661 6355943 -221168635 + Zaphod DNA AcHobo 3637 3925 -106 459 155 0 0 chr3 6356253 6356337 -221168241 + CT-rich Low_complexity Low_complexity 1 84 0 749 189 6 89 chr3 6357187 6357367 -221167211 + FRAM SINE Alu 1 164 -12 241 317 0 12 chr3 6357950 6358032 -221166546 + L2 LINE L2 3134 3214 -58 860 276 85 39 chr3 6358377 6358787 -221165791 - LTR16A LTR ERVL -5 445 17 185 286 18 0 chr3 6358808 6358864 -221165714 - MER5A DNA MER1_type -6 183 127 1943 150 0 3 chr3 6358864 6359151 -221165427 + AluJb SINE Alu 1 286 -26 222 176 0 0 chr3 6359151 6359202 -221165376 + (CA)n Simple_repeat Simple_repeat 1 51 0 795 193 0 0 chr3 6359202 6359337 -221165241 - MER5A DNA MER1_type -53 136 2 576 331 48 51 chr3 6359464 6359899 -221164679 - L2 LINE L2 -504 2810 2377 2074 135 0 3 chr3 6361332 6361621 -221162957 + AluSx SINE Alu 1 288 -24 185 233 0 23 chr3 6362007 6362050 -221162528 - MIR SINE MIR -62 146 105 180 402 51 8 chr3 6362077 6362194 -221162384 + MER5A DNA MER1_type 49 170 -19 515 266 62 35 chr3 6362796 6363022 -221161556 + L1ME LINE L1 5547 5778 -343 1539 92 0 0 chr3 6363153 6363359 -221161219 + L1PA8A LINE L1 10 215 -5660 * 27940 128 12 13 chr3 6363356 6367665 -221156913 + L1PA8A LINE L1 1022 5362 -1084 2048 110 0 34 chr3 6367665 6367977 -221156601 + AluSp SINE Alu 1 302 0 27940 128 12 13 chr3 6367977 6369060 -221155518 + L1PA8A LINE L1 5362 6445 -1 1888 111 0 73 chr3 6369080 6369396 -221155182 - AluSg SINE Alu -9 301 9 306 169 0 0 chr3 6369400 6369465 -221155113 + (TG)n Simple_repeat Simple_repeat 2 66 0 23 0 0 0 chr3 6370246 6370269 -221154309 + AT_rich Low_complexity Low_complexity 1 23 0 613 226 0 0 chr3 6371009 6371124 -221153454 - MIR SINE MIR -136 126 12 272 290 102 62 chr3 6371283 6371459 -221153119 + MIR SINE MIR 56 238 -24 207 0 0 0 chr3 6371814 6371837 -221152741 + (A)n Simple_repeat Simple_repeat 1 23 0 305 311 48 0 chr3 6371931 6372034 -221152544 - L3b LINE CR1 -199 1384 1277 562 228 9 0 chr3 6372081 6372195 -221152383 - Charlie1 DNA MER1_type -1 2760 2646 657 212 8 8 chr3 6372202 6372320 -221152258 + FLAM_C SINE Alu 3 120 -23 2533 45 0 0 chr3 6372346 6372634 -221151944 - AluY SINE Alu -23 288 1 880 221 103 0 chr3 6372643 6372847 -221151731 - Charlie1 DNA MER1_type -2536 225 1 1641 179 43 13 chr3 6372935 6373237 -221151341 - AluJo SINE Alu -1 311 1 487 241 182 32 chr3 6373913 6374133 -221150445 - MIR SINE MIR -8 254 2 1765 170 0 23 chr3 6374151 6374457 -221150121 + AluJb SINE Alu 2 300 -12 537 273 23 102 chr3 6375717 6376021 -221148557 + Charlie8 DNA MER1_type 9 288 -2129 2158 99 3 0 chr3 6376660 6376990 -221147588 - AluSq SINE Alu 0 331 1 230 143 71 0 chr3 6377784 6377826 -221146752 + Tigger6b DNA MER2_type 818 862 -735 1836 144 0 47 chr3 6378372 6378575 -221146003 - AluJo SINE Alu -24 288 102 2372 103 71 8 chr3 6378575 6378926 -221145652 - THE1C LTR MaLR -2 373 1 1836 144 0 47 chr3 6378926 6379020 -221145558 - AluJo SINE Alu -210 102 5 207 69 0 0 chr3 6379281 6379310 -221145268 + (T)n Simple_repeat Simple_repeat 1 29 0 1988 151 6 22 chr3 6379407 6379718 -221144860 - AluSx SINE Alu -6 306 1 342 279 55 24 chr3 6380812 6380977 -221143601 - MIR3 SINE MIR -24 184 15 720 209 144 56 chr3 6381535 6381724 -221142854 + L1ME4a LINE L1 5667 5838 -283 1652 199 27 0 chr3 6381724 6382016 -221142562 + AluJo SINE Alu 1 300 -12 720 209 144 56 chr3 6382016 6382146 -221142432 + L1ME4a LINE L1 5838 6014 -107 33789 36 2 2 chr3 6382447 6386487 -221138091 - L1P LINE L1 -1633 4513 472 7124 36 0 0 chr3 6386482 6387734 -221136844 + L1P1 LINE L1 4554 5805 -350 * 23 0 0 0 chr3 6388131 6388154 -221136424 + AT_rich Low_complexity Low_complexity 1 23 0 781 253 21 11 chr3 6388730 6388916 -221135662 - MER5A DNA MER1_type 0 189 2 609 276 134 32 chr3 6388984 6389328 -221135250 - L2 LINE L2 -1 3312 2934 934 259 59 8 chr3 6390756 6390992 -221133586 - MIR SINE MIR 0 262 15 2070 122 25 0 chr3 6391109 6391395 -221133183 + AluSx SINE Alu 1 293 -19 21 95 0 0 chr3 6391450 6391513 -221133065 + AT_rich Low_complexity Low_complexity 1 63 0 786 274 34 1 chr3 6391646 6391865 -221132713 - MIR SINE MIR -6 256 30 859 219 72 0 chr3 6392153 6392432 -221132146 + L1MEc LINE L1 2020 2318 -4078 479 256 0 0 chr3 6392411 6392532 -221132046 + L1MEc LINE L1 3433 3553 -2662 * 525 217 19 9 chr3 6392535 6392641 -221131937 + AluJo SINE Alu 116 222 -90 2806 224 54 15 chr3 6392667 6393448 -221131130 + L1MEc LINE L1 3584 4394 -1821 1611 157 102 4 chr3 6393963 6394237 -221130341 + AluJo SINE Alu 1 301 -11 782 199 34 28 chr3 6394418 6394594 -221129984 + MER5B DNA MER1_type 2 178 0 211 333 121 0 chr3 6395537 6395702 -221128876 + L2 LINE L2 2864 3048 -224 1912 149 0 17 chr3 6395883 6396178 -221128400 - AluJo SINE Alu -22 290 1 711 153 0 8 chr3 6396280 6396398 -221128180 - L1ME1 LINE L1 -5 6161 6045 319 194 124 5 chr3 6396435 6396578 -221128000 - MIR SINE MIR -27 235 13 2298 154 3 16 chr3 6397129 6397500 -221127078 - MER47A DNA MER2_type 0 366 1 1317 219 108 23 chr3 6398259 6398648 -221125930 + MLT1C LTR MaLR 1 422 -45 1826 102 31 0 chr3 6398687 6398942 -221125636 + AluSc SINE Alu 42 304 -5 230 132 26 0 chr3 6398951 6398989 -221125589 + MLT1B LTR MaLR 352 390 0 2871 139 7 16 chr3 6399231 6399671 -221124907 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 6400262 6400571 -221124007 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 6400687 6400839 -221123739 + L1MC5 LINE L1 7027 7178 -801 1826 153 0 14 chr3 6400839 6401126 -221123452 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 6401129 6401153 -221123425 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 6401153 6401223 -221123355 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 6401392 6401433 -221123145 + (CA)n Simple_repeat Simple_repeat 2 42 0 425 217 43 122 chr3 6401442 6401583 -221122995 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 6401583 6402161 -221122417 + L1PA7 LINE L1 5579 6154 0 425 217 43 122 chr3 6402161 6402173 -221122405 + L1MC5 LINE L1 7460 7471 -490 2227 129 0 0 chr3 6402173 6402484 -221122094 + AluSx SINE Alu 1 311 -1 425 217 43 122 chr3 6402484 6402559 -221122019 + L1MC5 LINE L1 7471 7521 -440 1520 213 216 17 chr3 6402587 6402995 -221121583 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 6403033 6403328 -221121250 - L1MCa LINE L1 -4387 1995 1698 * 9888 210 48 22 chr3 6403324 6403950 -221120628 - L1MD1 LINE L1 -1 6635 6027 2175 125 0 0 chr3 6403950 6404262 -221120316 - AluSx SINE Alu 0 312 1 9888 210 48 22 chr3 6404262 6409672 -221114906 - L1MD1 LINE L1 -609 6027 202 1440 171 0 0 chr3 6409677 6409894 -221114684 - AluJb SINE Alu -30 282 66 603 259 63 0 chr3 6409900 6410043 -221114535 - L1MD1 LINE L1 -6358 182 31 1680 235 66 84 chr3 6410072 6410542 -221114036 - L1MCa LINE L1 -4727 1657 1180 1718 183 3 25 chr3 6410542 6410859 -221113719 - AluJb SINE Alu -2 310 1 1680 235 66 84 chr3 6410859 6410893 -221113685 - L1MCa LINE L1 -5204 1180 1147 1851 183 3 3 chr3 6410893 6411204 -221113374 - AluJb SINE Alu -1 311 1 1680 235 66 84 chr3 6411204 6411607 -221112971 - L1MCa LINE L1 -5237 1147 765 227 64 0 43 chr3 6411685 6411732 -221112846 + LTR66 LTR ERVL 394 438 -172 180 77 0 0 chr3 6411733 6411759 -221112819 + (GA)n Simple_repeat Simple_repeat 2 27 0 249 33 0 0 chr3 6411808 6411838 -221112740 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1685 191 3 3 chr3 6412410 6412709 -221111869 - AluJo SINE Alu -13 299 1 198 0 0 0 chr3 6412710 6412732 -221111846 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 6412732 6412754 -221111824 + AT_rich Low_complexity Low_complexity 1 22 0 475 188 11 152 chr3 6413035 6413248 -221111330 + L1MC5 LINE L1 7545 7712 -249 1715 168 45 3 chr3 6413248 6413534 -221111044 - AluJb SINE Alu -14 298 1 475 188 11 152 chr3 6413534 6413597 -221110981 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 6413640 6413942 -221110636 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 6414119 6414269 -221110309 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 6415071 6415163 -221109415 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 6415175 6415316 -221109262 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 6416967 6417212 -221107366 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 6417295 6417397 -221107181 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 6417705 6417729 -221106849 + AT_rich Low_complexity Low_complexity 1 24 0 1895 143 61 3 chr3 6418822 6419115 -221105463 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 6419705 6419879 -221104699 - MIR SINE MIR -12 250 48 5246 56 0 0 chr3 6419894 6420501 -221104077 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 6420653 6420783 -221103795 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 6421363 6421634 -221102944 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 6421638 6421886 -221102692 + L3 LINE CR1 605 877 -700 209 312 64 9 chr3 6421944 6422053 -221102525 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 6422163 6422382 -221102196 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 6422418 6422920 -221101658 + L3 LINE CR1 1019 1527 -50 2124 105 3 24 chr3 6423554 6423870 -221100708 + AluSp SINE Alu 1 310 0 194 227 0 23 chr3 6423925 6423969 -221100609 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 6424463 6424765 -221099813 - AluJb SINE Alu -10 302 2 2109 130 0 13 chr3 6425452 6425767 -221098811 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr3 6426164 6426192 -221098386 + (CA)n Simple_repeat Simple_repeat 2 29 0 393 282 87 28 chr3 6427047 6427299 -221097279 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 6427309 6427390 -221097188 + L1ME LINE L1 5428 5508 -851 832 176 0 0 chr3 6427624 6427755 -221096823 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 6427767 6428068 -221096510 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 6428098 6428285 -221096293 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 6430898 6430933 -221093645 + AT_rich Low_complexity Low_complexity 1 35 0 2021 122 3 20 chr3 6431680 6431984 -221092594 + AluSx SINE Alu 1 299 -13 1784 183 0 3 chr3 6432092 6432382 -221092196 - AluJb SINE Alu -21 291 3 322 219 73 0 chr3 6432402 6432484 -221092094 + MIR SINE MIR 86 173 -89 1677 175 0 45 chr3 6432822 6432951 -221091627 + AluJo SINE Alu 1 134 -178 2091 127 0 3 chr3 6432951 6433243 -221091335 - AluSx SINE Alu -21 291 1 1677 175 0 45 chr3 6433243 6433421 -221091157 + AluJo SINE Alu 134 294 -18 1964 136 58 0 chr3 6434040 6434335 -221090243 + AluSx SINE Alu 1 312 0 330 299 49 37 chr3 6434444 6434608 -221089970 + L1ME LINE L1 5502 5667 -454 2132 130 0 0 chr3 6434609 6434920 -221089658 + AluSx SINE Alu 1 311 0 764 188 79 50 chr3 6434938 6435140 -221089438 + MLT1A1 LTR MaLR 157 364 -1 393 275 126 60 chr3 6435228 6435592 -221088986 + L1ME4a LINE L1 5557 5944 -177 1108 223 20 12 chr3 6435619 6435866 -221088712 + MIR SINE MIR 14 262 0 428 260 82 7 chr3 6435876 6436022 -221088556 + L1ME4a LINE L1 5960 6116 -5 26 0 0 0 chr3 6436436 6436462 -221088116 + AT_rich Low_complexity Low_complexity 1 26 0 491 271 100 24 chr3 6437580 6437831 -221086747 + LTR16A LTR ERVL 180 449 -1 321 170 0 0 chr3 6438076 6438129 -221086449 - L2 LINE L2 0 3272 3220 2281 87 0 3 chr3 6439476 6439774 -221084804 - AluY SINE Alu -14 297 1 323 269 81 44 chr3 6439964 6440151 -221084427 + MIR SINE MIR 40 229 -33 619 271 57 38 chr3 6440221 6440431 -221084147 + MIR SINE MIR 15 228 -34 1843 146 0 17 chr3 6440568 6440863 -221083715 - AluJb SINE Alu -22 290 1 26 0 0 0 chr3 6441445 6441471 -221083107 + AT_rich Low_complexity Low_complexity 1 26 0 881 229 47 74 chr3 6441492 6441787 -221082791 - L1MC3 LINE L1 -390 5780 5589 31 26 0 0 chr3 6441846 6441884 -221082694 + AT_rich Low_complexity Low_complexity 1 38 0 1994 86 67 0 chr3 6441885 6442153 -221082425 - L1PB1 LINE L1 -2 6149 5864 1888 92 62 0 chr3 6442153 6442358 -221082220 + L1PB1 LINE L1 5573 5801 -350 333 0 0 0 chr3 6442358 6442395 -221082183 + (CA)n Simple_repeat Simple_repeat 2 38 0 1888 92 62 0 chr3 6442395 6442462 -221082116 + L1PB1 LINE L1 5801 5862 -289 215 205 0 0 chr3 6442590 6442629 -221081949 - L2 LINE L2 -13 3300 3262 22 70 0 0 chr3 6442694 6442737 -221081841 + AT_rich Low_complexity Low_complexity 1 43 0 2446 150 43 26 chr3 6442737 6443156 -221081422 + MSTB LTR MaLR 1 426 0 1071 180 15 40 chr3 6443959 6444159 -221080419 - MER20 DNA MER1_type 0 219 25 973 260 4 13 chr3 6444229 6444460 -221080118 + MIR SINE MIR 7 235 -27 2450 94 10 104 chr3 6444800 6445202 -221079376 - THE1B LTR MaLR 0 364 1 366 268 85 68 chr3 6447193 6447438 -221077140 + L1ME4a LINE L1 5808 6060 -61 1935 163 0 0 chr3 6447438 6447732 -221076846 - AluJo SINE Alu -18 294 1 366 268 85 68 chr3 6447732 6447781 -221076797 + L1ME4a LINE L1 6060 6107 -14 403 253 103 79 chr3 6447989 6448242 -221076336 - L1ME4a LINE L1 -239 5882 5624 305 319 166 25 chr3 6449059 6449222 -221075356 - MIR3 SINE MIR -15 193 8 306 252 72 9 chr3 6449308 6449419 -221075159 + MER103 DNA DNA 18 135 -31 421 261 6 85 chr3 6449419 6449584 -221074994 + MIR SINE MIR 33 184 -78 251 246 15 0 chr3 6449677 6449742 -221074836 - L2 LINE L2 -7 3306 3241 183 420 37 0 chr3 6450047 6450128 -221074450 - L3 LINE CR1 -10 1567 1484 2593 201 14 20 chr3 6450199 6450839 -221073739 + LTR27 LTR ERV1 3 696 -134 229 220 102 17 chr3 6450830 6450889 -221073689 + LTR27 LTR ERV1 570 633 -3 * 375 244 37 0 chr3 6450896 6450978 -221073600 - MER94 DNA DNA -49 85 1 445 331 103 29 chr3 6450981 6451262 -221073316 - L3 LINE CR1 -95 1482 1181 296 254 328 53 chr3 6451270 6451663 -221072915 + L2 LINE L2 2400 2900 -414 * 484 294 70 56 chr3 6451661 6451947 -221072631 + L2 LINE L2 3008 3297 -16 2009 150 72 0 chr3 6453041 6453374 -221071204 + L1MB4 LINE L1 5816 6172 -8 309 311 10 19 chr3 6453633 6453736 -221070842 - MIR SINE MIR -12 250 149 1827 226 79 45 chr3 6453914 6454004 -221070574 + L1MDa LINE L1 669 755 -5374 2151 110 3 10 chr3 6454004 6454303 -221070275 - AluSx SINE Alu -13 299 3 1827 226 79 45 chr3 6454303 6455065 -221069513 + L1MDa LINE L1 755 1708 -4421 848 153 0 29 chr3 6455079 6455216 -221069362 + AluJb SINE Alu 2 134 -178 327 200 130 52 chr3 6455225 6455495 -221069083 + L1MDa LINE L1 1718 2008 -4121 427 231 30 60 chr3 6455526 6455660 -221068918 + L1MDa LINE L1 1063 1192 -4927 239 211 42 0 chr3 6455681 6455752 -221068826 + L1MEd LINE L1 2848 2921 -3208 391 248 97 52 chr3 6455789 6456157 -221068421 + L1MDa LINE L1 1231 1667 -823 503 251 71 51 chr3 6456491 6456734 -221067844 + L1MDa LINE L1 1997 2257 -3872 2239 123 7 0 chr3 6456734 6457044 -221067534 + AluSx SINE Alu 1 312 0 503 251 71 51 chr3 6457044 6457210 -221067368 + L1MDa LINE L1 2257 2418 -3711 21 100 0 0 chr3 6457221 6457291 -221067287 + AT_rich Low_complexity Low_complexity 1 70 0 1501 180 0 42 chr3 6457367 6457673 -221066905 + MER31B LTR ERV1 1 293 -173 895 300 84 18 chr3 6457675 6458305 -221066273 + L1MDa LINE L1 2409 3080 -3049 231 294 58 19 chr3 6458305 6458317 -221066261 - MIR SINE MIR -86 122 112 1908 135 0 10 chr3 6458317 6458613 -221065965 + AluJo SINE Alu 1 293 -19 231 294 58 19 chr3 6458613 6458699 -221065879 - MIR SINE MIR -96 112 22 603 183 87 32 chr3 6458803 6458929 -221065649 - FLAM_C SINE Alu 0 133 1 2397 73 0 29 chr3 6459028 6459341 -221065237 + AluSq SINE Alu 1 304 -9 3743 139 2 13 chr3 6460091 6460624 -221063954 + MER1A DNA MER1_type 1 527 0 2255 19 0 15 chr3 6461334 6461595 -221062983 - AluY SINE Alu -14 297 41 251 300 14 0 chr3 6461702 6461772 -221062806 + GA-rich Low_complexity Low_complexity 2 72 0 1909 141 3 16 chr3 6462070 6462374 -221062204 + AluSx SINE Alu 1 300 -12 681 320 47 36 chr3 6462475 6462558 -221062020 + HAL1b LINE L1 1 82 -1266 1817 173 3 6 chr3 6462558 6462871 -221061707 + AluJo SINE Alu 1 312 0 681 320 47 36 chr3 6462871 6463403 -221061175 + HAL1b LINE L1 82 623 -725 575 258 101 69 chr3 6463647 6464128 -221060450 + L1MC5 LINE L1 5975 6774 -1034 409 255 50 28 chr3 6464088 6464229 -221060349 + L1MB8 LINE L1 5975 6118 -60 * 353 183 37 0 chr3 6464256 6464338 -221060240 + L1MB7 LINE L1 6090 6174 -10 1781 165 0 38 chr3 6464405 6464721 -221059857 - AluJo SINE Alu -8 304 1 1792 191 55 92 chr3 6464721 6464769 -221059809 + L1MC5 LINE L1 6928 6976 -985 1367 192 7 19 chr3 6464769 6465040 -221059538 + L1MD2 LINE L1 6090 6357 -2 1792 191 55 92 chr3 6465040 6465231 -221059347 + L1MC5 LINE L1 6976 7173 -788 2774 110 6 3 chr3 6465231 6465594 -221058984 + THE1B LTR MaLR 1 364 0 1792 191 55 92 chr3 6465594 6465976 -221058602 + L1MC5 LINE L1 7173 7527 -434 503 250 28 65 chr3 6466062 6466278 -221058300 + L1ME3A LINE L1 5963 6170 0 755 208 95 41 chr3 6466301 6466595 -221057983 + MER113 DNA MER1_type? 175 484 -37 431 325 16 26 chr3 6469142 6469333 -221055245 - MER5A DNA MER1_type 0 189 1 775 333 71 50 chr3 6469588 6470026 -221054552 - L2 LINE L2 0 3272 2826 1691 204 109 12 chr3 6470071 6470149 -221054429 - Charlie4a DNA MER1_type -1458 503 434 205 27 81 0 chr3 6470149 6470186 -221054392 + A-rich Low_complexity Low_complexity 5 44 0 1691 204 109 12 chr3 6470186 6470498 -221054080 - Charlie4a DNA MER1_type -1527 434 65 628 89 0 0 chr3 6470498 6470577 -221054001 - MADE1 DNA Mariner 0 80 2 1691 204 109 12 chr3 6470577 6470617 -221053961 - Charlie4a DNA MER1_type -1896 65 30 2256 78 17 0 chr3 6470764 6471059 -221053519 - AluY SINE Alu -11 300 1 731 245 92 40 chr3 6471642 6471891 -221052687 + MIR SINE MIR 1 262 0 1533 174 41 27 chr3 6472447 6472610 -221051968 - AluJb SINE Alu -15 297 127 2461 70 0 3 chr3 6472610 6472910 -221051668 - AluSx SINE Alu -13 299 1 1533 174 41 27 chr3 6472910 6473039 -221051539 - AluJb SINE Alu -185 127 1 1249 293 57 14 chr3 6473334 6473928 -221050650 + L1PA4 LINE L1 5306 5925 -230 * 4657 148 26 1 chr3 6473408 6474163 -221050415 + L1MB7 LINE L1 5391 6164 -20 4572 177 22 10 chr3 6474321 6474510 -221050068 + L1 LINE L1 3317 3502 -2644 2170 106 0 3 chr3 6474510 6474818 -221049760 + AluSx SINE Alu 1 307 0 4572 177 22 10 chr3 6474818 6475521 -221049057 + L1 LINE L1 3502 4221 -1925 1363 97 0 0 chr3 6475521 6475696 -221048882 - AluY SINE Alu -5 306 132 402 147 0 0 chr3 6475696 6475764 -221048814 + (TA)n Simple_repeat Simple_repeat 2 69 0 225 103 0 0 chr3 6475764 6475803 -221048775 + LTR66 LTR ERVL 398 436 -174 231 333 0 0 chr3 6475826 6475916 -221048662 - L1MC4 LINE L1 -1339 6703 6614 * 241 269 0 43 chr3 6475839 6475932 -221048646 + L1MC4 LINE L1 6615 6703 -1339 659 209 9 8 chr3 6475933 6476170 -221048408 + (TATATG)n Simple_repeat Simple_repeat 1 237 0 975 112 0 0 chr3 6476193 6476318 -221048260 - AluSq/x SINE Alu -188 125 1 335 155 0 0 chr3 6476318 6476376 -221048202 + L1MA7 LINE L1 4326 4383 -1763 5828 136 28 18 chr3 6476419 6477650 -221046928 + L1MA7 LINE L1 4585 5836 -455 2349 79 0 3 chr3 6477650 6477954 -221046624 + AluY SINE Alu 1 303 -8 5828 136 28 18 chr3 6477954 6478415 -221046163 + L1MA7 LINE L1 5836 6291 0 517 248 17 102 chr3 6478989 6479286 -221045292 + L1MC4a LINE L1 5707 5822 -332 294 50 0 0 chr3 6479676 6479716 -221044862 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 35 0 0 chr3 6479715 6479744 -221044834 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1464 184 14 14 chr3 6479744 6480027 -221044551 - AluJo SINE Alu -25 287 5 343 325 71 0 chr3 6480049 6480175 -221044403 + L2 LINE L2 3177 3311 -2 719 279 190 52 chr3 6481142 6481658 -221042920 + MLT1K LTR MaLR 2 588 0 23 0 0 0 chr3 6481769 6481792 -221042786 + AT_rich Low_complexity Low_complexity 1 23 0 297 253 96 12 chr3 6481973 6482056 -221042522 + MIR SINE MIR 98 187 -75 2239 85 0 4 chr3 6482286 6482591 -221041987 + AluSc SINE Alu 1 304 0 294 50 0 0 chr3 6483469 6483509 -221041069 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 266 73 97 chr3 6483525 6483649 -221040929 + L2 LINE L2 3188 3308 -5 2278 109 0 13 chr3 6484271 6484583 -221039995 + AluSc SINE Alu 1 308 -1 199 255 0 21 chr3 6485072 6485119 -221039459 + MIR SINE MIR 19 64 -144 2550 42 0 7 chr3 6485182 6485488 -221039090 - AluSg SINE Alu -6 304 1 346 200 32 42 chr3 6486557 6486652 -221037926 - MIR SINE MIR 0 262 169 1105 82 0 7 chr3 6486659 6486806 -221037772 + AluSc SINE Alu 150 295 -14 506 219 0 0 chr3 6486811 6486907 -221037671 + MER5A DNA MER1_type 94 189 0 444 228 28 108 chr3 6486947 6486994 -221037584 + L1MC5 LINE L1 7476 7525 -436 2520 46 3 3 chr3 6486994 6487297 -221037281 + AluY SINE Alu 1 303 -8 444 228 28 108 chr3 6487297 6487499 -221037079 + L1MC5 LINE L1 7525 7705 -256 246 143 0 0 chr3 6487511 6487560 -221037018 + (CA)n Simple_repeat Simple_repeat 2 50 0 493 255 78 21 chr3 6487563 6487755 -221036823 + L1MC5 LINE L1 7731 7933 -28 1876 155 0 3 chr3 6487755 6488052 -221036526 + AluJo SINE Alu 1 296 -16 205 336 95 0 chr3 6488086 6488202 -221036376 - MIR SINE MIR -48 214 88 293 342 63 0 chr3 6488347 6488458 -221036120 + L2 LINE L2 3147 3264 -8 447 297 36 26 chr3 6488573 6488765 -221035813 + MIR SINE MIR 69 262 0 400 271 57 8 chr3 6489092 6489214 -221035364 - L2 LINE L2 -379 2934 2807 197 265 235 0 chr3 6489217 6489319 -221035259 - L2 LINE L2 -469 2845 2720 1249 306 55 26 chr3 6489362 6489943 -221034635 - HERV16 LTR ERVL -743 5021 4424 1187 117 42 124 chr3 6489955 6490143 -221034435 - L1M4 LINE L1 -408 5770 5611 1503 169 43 32 chr3 6490143 6490421 -221034157 - AluJb SINE Alu -31 281 1 1187 117 42 124 chr3 6490421 6490515 -221034063 - L1M4 LINE L1 -567 5611 5511 1419 298 72 50 chr3 6490533 6491251 -221033327 - HERV16 LTR ERVL -4136 860 127 227 288 0 0 chr3 6491367 6491426 -221033152 - LTR16B LTR ERVL 0 464 406 430 169 26 0 chr3 6491459 6491536 -221033042 + FLAM_C SINE Alu 65 143 0 426 204 0 0 chr3 6491540 6491633 -221032945 + A-rich Low_complexity Low_complexity 1 93 0 519 358 33 25 chr3 6491660 6492023 -221032555 - LTR16B LTR ERVL -65 399 34 1353 276 117 15 chr3 6492086 6492549 -221032029 + L2 LINE L2 2804 3313 0 501 221 8 33 chr3 6492769 6492891 -221031687 - L2 LINE L2 0 3313 3195 201 276 53 0 chr3 6492888 6492964 -221031614 + MIR SINE MIR 183 262 0 * 21 0 0 0 chr3 6493010 6493031 -221031547 + AT_rich Low_complexity Low_complexity 1 21 0 2589 45 3 0 chr3 6493274 6493584 -221030994 - AluY SINE Alu 0 311 1 578 223 159 19 chr3 6494224 6494381 -221030197 - MER5A DNA MER1_type -10 179 1 2041 183 21 50 chr3 6495582 6496047 -221028531 + MLT1D LTR MaLR 54 505 0 622 212 18 0 chr3 6496566 6496679 -221027899 - MER5A DNA MER1_type -3 186 72 524 186 0 21 chr3 6496679 6496776 -221027802 - AluJo SINE Alu -1 311 217 808 175 0 42 chr3 6496777 6496920 -221027658 - AluJo SINE Alu -167 145 9 407 190 0 25 chr3 6496923 6497002 -221027576 - MER5A DNA MER1_type -109 80 4 491 296 87 6 chr3 6497034 6497206 -221027372 + MIR SINE MIR 61 246 -16 24 0 0 0 chr3 6497986 6498010 -221026568 + AT_rich Low_complexity Low_complexity 1 24 0 1855 95 4 58 chr3 6498016 6498290 -221026288 + AluSx SINE Alu 1 259 -53 255 103 0 0 chr3 6498303 6498342 -221026236 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 248 282 137 30 chr3 6498415 6498546 -221026032 + MIR3 SINE MIR 16 160 -48 571 261 69 42 chr3 6498713 6498931 -221025647 - MIR SINE MIR 0 262 29 1310 158 5 23 chr3 6499392 6499613 -221024965 + AluJo SINE Alu 64 280 -32 306 0 0 0 chr3 6499613 6499647 -221024931 + (TAA)n Simple_repeat Simple_repeat 2 35 0 184 247 398 11 chr3 6499707 6499800 -221024778 - MIR SINE MIR -85 177 49 2794 130 28 77 chr3 6499810 6499842 -221024736 - L1MB8 LINE L1 0 6178 6146 1256 188 96 11 chr3 6499842 6500113 -221024465 + AluJo SINE Alu 1 294 -18 2794 130 28 77 chr3 6500113 6500411 -221024167 - L1MB8 LINE L1 -32 6146 5885 2263 63 40 27 chr3 6500411 6500712 -221023866 - AluSq SINE Alu -8 305 1 2794 130 28 77 chr3 6500712 6500955 -221023623 - L1MB8 LINE L1 -293 5885 5632 2007 151 13 0 chr3 6501061 6501360 -221023218 - AluJb SINE Alu -9 303 1 21 36 0 0 chr3 6501406 6501434 -221023144 + AT_rich Low_complexity Low_complexity 1 28 0 201 303 34 22 chr3 6501516 6501605 -221022973 - L2 LINE L2 -5 3308 3219 2209 111 0 3 chr3 6501875 6502182 -221022396 - AluSx SINE Alu -6 306 1 556 114 13 0 chr3 6502596 6502675 -221021903 - MADE1 DNA Mariner 0 80 1 2197 134 0 0 chr3 6502741 6503048 -221021530 - AluSx SINE Alu -5 307 1 970 191 182 22 chr3 6503128 6503353 -221021225 - AluJo SINE Alu -23 289 29 1840 153 0 4 chr3 6503541 6503838 -221020740 - AluSx SINE Alu 0 304 9 204 158 0 0 chr3 6503947 6503985 -221020593 + C-rich Low_complexity Low_complexity 1 38 0 1762 117 62 22 chr3 6503985 6504258 -221020320 - AluSx SINE Alu -17 295 12 207 100 0 0 chr3 6504337 6504367 -221020211 + (TCC)n Simple_repeat Simple_repeat 3 32 0 1921 139 3 3 chr3 6505325 6505613 -221018965 - AluSx SINE Alu -24 288 1 1140 123 0 0 chr3 6505980 6506135 -221018443 - AluSg/x SINE Alu -16 296 142 1602 249 83 54 chr3 6506142 6506395 -221018183 - L1MC4 LINE L1 -160 7882 7638 712 154 24 0 chr3 6506395 6506518 -221018060 - L1MA6 LINE L1 0 6300 6175 1602 249 83 54 chr3 6506518 6506926 -221017652 - L1MC4 LINE L1 -404 7638 7194 1989 155 0 3 chr3 6506926 6507230 -221017348 - AluJb SINE Alu -9 303 1 1602 249 83 54 chr3 6507230 6507326 -221017252 - L1MC4 LINE L1 -848 7194 7102 1045 73 66 20 chr3 6508533 6508684 -221015894 - L1MA1 LINE L1 0 6302 6145 1212 183 121 0 chr3 6509307 6509596 -221014982 - MER33 DNA MER1_type 0 324 1 362 244 139 45 chr3 6510578 6510786 -221013792 + MIR SINE MIR 20 261 -1 199 185 37 19 chr3 6510925 6510979 -221013599 - MIR SINE MIR -72 136 82 280 293 19 9 chr3 6511070 6511176 -221013402 + MIR SINE MIR 56 162 -100 198 103 0 0 chr3 6511251 6511280 -221013298 + (TTA)n Simple_repeat Simple_repeat 3 31 0 253 203 188 0 chr3 6511331 6511400 -221013178 + L2 LINE L2 3187 3268 -4 226 96 19 19 chr3 6512477 6512529 -221012049 + (GGA)n Simple_repeat Simple_repeat 1 52 0 245 280 86 0 chr3 6514788 6514881 -221009697 - MIR SINE MIR -125 137 37 1009 255 99 49 chr3 6516427 6516633 -221007945 - L2 LINE L2 0 3313 3119 3635 154 54 6 chr3 6516633 6517302 -221007276 + L1MB3 LINE L1 5481 6181 -2 1009 255 99 49 chr3 6517302 6517581 -221006997 - L2 LINE L2 -194 3119 2804 664 211 113 14 chr3 6518095 6518237 -221006341 + FAM SINE Alu 11 166 -19 21 82 0 0 chr3 6518557 6518606 -221005972 + AT_rich Low_complexity Low_complexity 1 49 0 708 221 129 40 chr3 6518606 6518878 -221005700 - L1MC5 LINE L1 -353 7608 7313 565 177 0 35 chr3 6518878 6518991 -221005587 - FLAM_A SINE Alu -12 130 22 228 237 17 0 chr3 6519035 6519094 -221005484 - L1MC5 LINE L1 -713 7248 7189 825 188 38 42 chr3 6519112 6519273 -221005305 - L1MC5 LINE L1 -1079 6882 6721 1709 193 0 7 chr3 6519273 6519578 -221005000 - AluJo SINE Alu -9 303 1 825 188 38 42 chr3 6519578 6519629 -221004949 - L1MC5 LINE L1 -1240 6721 6671 313 250 95 87 chr3 6519862 6519929 -221004649 - MER112 DNA MER1_type -2 254 189 1664 176 10 33 chr3 6519929 6520236 -221004342 - AluJo SINE Alu -12 300 1 313 250 95 87 chr3 6520236 6520420 -221004158 - MER112 DNA MER1_type -67 189 1 441 245 0 10 chr3 6520436 6520538 -221004040 + MER5A DNA MER1_type 9 109 -80 2305 99 0 0 chr3 6521521 6521813 -221002765 - AluSc SINE Alu -17 292 1 2210 114 0 13 chr3 6521874 6522181 -221002397 + AluSx SINE Alu 1 303 -9 240 197 45 45 chr3 6522449 6522515 -221002063 + MIR SINE MIR 112 177 -85 586 152 101 177 chr3 6522596 6522833 -221001745 + MER20 DNA MER1_type 1 219 0 264 329 71 14 chr3 6523017 6523157 -221001421 + MIR3 SINE MIR 21 168 -40 2114 137 3 0 chr3 6524269 6524568 -221000010 - AluSx SINE Alu -12 300 1 341 231 44 0 chr3 6525146 6525237 -220999341 - MIR SINE MIR -72 190 96 887 290 78 38 chr3 6525239 6525760 -220998818 + L2 LINE L2 2748 3296 -17 1764 194 61 33 chr3 6525935 6526393 -220998185 - Charlie1b DNA MER1_type 0 523 53 189 0 0 0 chr3 6527530 6527551 -220997027 + (T)n Simple_repeat Simple_repeat 1 21 0 576 314 8 47 chr3 6528159 6528392 -220996186 - MIR SINE MIR -35 227 5 1803 163 3 20 chr3 6528589 6528883 -220995695 + AluJb SINE Alu 6 294 -18 734 287 129 39 chr3 6528929 6529626 -220994952 - L2 LINE L2 -7 3265 2494 473 289 29 95 chr3 6529633 6530013 -220994565 - L2 LINE L2 0 3272 2918 686 326 9 0 chr3 6530630 6530857 -220993721 - MIR SINE MIR -24 238 10 1237 188 111 30 chr3 6531067 6531338 -220993240 - AluJo SINE Alu -17 295 3 247 303 26 0 chr3 6531424 6531500 -220993078 + L3 LINE CR1 1499 1576 -1 356 278 90 0 chr3 6531751 6531895 -220992683 - MIR SINE MIR 0 262 106 248 222 96 44 chr3 6532691 6532826 -220991752 - L1ME4a LINE L1 0 6121 5980 2050 141 0 3 chr3 6532873 6533170 -220991408 + AluSx SINE Alu 1 296 -16 535 284 37 46 chr3 6533180 6533398 -220991180 + MIR SINE MIR 47 262 0 185 380 133 0 chr3 6534781 6534894 -220989684 + MIR3 SINE MIR 44 171 -37 421 296 45 34 chr3 6536973 6537149 -220987429 - MIR SINE MIR -19 243 66 637 143 0 114 chr3 6537862 6538002 -220986576 + FLAM_A SINE Alu 5 128 -5 319 324 20 0 chr3 6538112 6538214 -220986364 - MIR3 SINE MIR -39 169 66 2284 110 0 0 chr3 6538293 6538594 -220985984 - AluSc SINE Alu -8 301 1 302 241 12 36 chr3 6539237 6539320 -220985258 + MIR SINE MIR 61 141 -121 1818 157 0 60 chr3 6540637 6540968 -220983610 + AluJb SINE Alu 1 311 -1 251 247 27 55 chr3 6541134 6541207 -220983371 - MER5B DNA MER1_type -1 177 107 23 0 0 0 chr3 6541247 6541270 -220983308 + AT_rich Low_complexity Low_complexity 1 23 0 206 191 0 0 chr3 6541831 6541873 -220982705 - MIR SINE MIR -32 230 189 730 196 124 0 chr3 6541970 6542123 -220982455 - MER5B DNA MER1_type -3 175 4 2664 126 62 5 chr3 6542383 6542821 -220981757 - L1MA8 LINE L1 0 6291 5829 243 0 0 0 chr3 6543371 6543398 -220981180 + (T)n Simple_repeat Simple_repeat 1 27 0 600 302 6 6 chr3 6543828 6544010 -220980568 + MIR SINE MIR 12 193 -69 195 212 0 0 chr3 6544074 6544107 -220980471 + L2 LINE L2 3201 3233 -39 21 36 0 0 chr3 6544135 6544163 -220980415 + AT_rich Low_complexity Low_complexity 1 28 0 252 381 138 0 chr3 6544208 6544397 -220980181 + MIR SINE MIR 46 260 -2 400 264 92 12 chr3 6545651 6545814 -220978764 - MIR SINE MIR -1 261 86 213 254 0 18 chr3 6545841 6545896 -220978682 - L2 LINE L2 -2 3270 3217 1577 178 11 3 chr3 6546257 6546544 -220978034 - AluJo SINE Alu -23 289 1 348 284 123 0 chr3 6547150 6547305 -220977273 + MIR3 SINE MIR 20 193 -15 710 226 62 5 chr3 6548892 6549087 -220975491 - MIR SINE MIR -55 207 2 1786 148 11 0 chr3 6549570 6549841 -220974737 + AluJo SINE Alu 1 274 -38 198 0 0 0 chr3 6549842 6549864 -220974714 + (CAA)n Simple_repeat Simple_repeat 1 22 0 227 209 30 15 chr3 6550116 6550183 -220974395 - MIR SINE MIR -90 172 105 420 267 86 97 chr3 6550413 6550891 -220973687 + L2 LINE L2 2591 3053 -219 825 292 5 0 chr3 6550924 6551140 -220973438 + MIR SINE MIR 24 240 -22 264 278 213 0 chr3 6551197 6551305 -220973273 + L2 LINE L2 3141 3271 -1 235 291 243 0 chr3 6551320 6551423 -220973155 - MER5A DNA MER1_type 0 189 62 2025 149 0 19 chr3 6551423 6551739 -220972839 - AluJb SINE Alu -2 310 1 320 254 150 68 chr3 6551786 6552066 -220972512 + L3 LINE CR1 1233 1535 -42 740 260 60 16 chr3 6552369 6552619 -220971959 + MIR SINE MIR 1 261 -1 1298 149 36 5 chr3 6553183 6553404 -220971174 - L1PB4 LINE L1 0 6156 5929 2574 57 0 16 chr3 6554496 6554812 -220969766 - AluY SINE Alu 0 311 1 624 274 87 20 chr3 6556172 6556471 -220968107 - L1MCa LINE L1 -2457 3672 3354 1828 188 169 2 chr3 6556516 6556941 -220967637 + MLT1D LTR MaLR 1 496 -9 397 273 71 24 chr3 6556955 6557252 -220967326 - L1MCa LINE L1 -2854 3275 2965 6386 82 28 8 chr3 6557252 6558120 -220966458 + L1PA10 LINE L1 5276 6160 -8 459 252 57 69 chr3 6558118 6558538 -220966040 - L1MCa LINE L1 -3116 3013 2599 * 368 195 73 0 chr3 6558568 6558650 -220965928 + L1ME1 LINE L1 6029 6116 -50 2187 142 87 25 chr3 6558652 6559053 -220965525 + MSTC LTR MaLR 1 426 -2 703 249 61 42 chr3 6559211 6559588 -220964990 - L1MCa LINE L1 -3649 2480 2097 249 108 0 0 chr3 6559641 6559678 -220964900 + (TG)n Simple_repeat Simple_repeat 2 38 0 1671 166 48 0 chr3 6559678 6559949 -220964629 - AluSx SINE Alu -28 284 1 274 257 117 11 chr3 6560522 6560701 -220963877 - L1MCa LINE L1 -4928 1201 1004 2269 107 0 0 chr3 6560705 6560996 -220963582 - AluSc SINE Alu -18 291 1 589 279 98 33 chr3 6561005 6561525 -220963053 - L1MCa LINE L1 -5029 1090 537 365 342 94 19 chr3 6561764 6562030 -220962548 - L1MCa LINE L1 -5776 343 58 1058 150 48 0 chr3 6562196 6562363 -220962215 + FRAM SINE Alu 2 176 0 256 23 0 47 chr3 6562503 6562546 -220962032 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1619 102 0 0 chr3 6562609 6562814 -220961764 - AluSx SINE Alu -107 205 1 395 304 116 39 chr3 6562822 6563210 -220961368 - MLT1L LTR MaLR -3 612 195 1804 149 14 20 chr3 6563872 6564167 -220960411 - AluJo SINE Alu -19 293 1 1882 176 0 0 chr3 6564412 6564713 -220959865 + AluJb SINE Alu 1 301 -11 1979 145 3 0 chr3 6564763 6565052 -220959526 - AluJo SINE Alu -6 306 17 439 314 71 18 chr3 6565054 6565223 -220959355 + MIR SINE MIR 84 261 -1 343 344 75 0 chr3 6565405 6565565 -220959013 - MIR SINE MIR -71 191 20 21 0 0 0 chr3 6565832 6565853 -220958725 + AT_rich Low_complexity Low_complexity 1 21 0 446 338 20 7 chr3 6565984 6566135 -220958443 + MIR3 SINE MIR 7 159 -49 206 227 23 0 chr3 6566150 6566194 -220958384 - L2 LINE L2 -15 3257 3213 839 213 33 0 chr3 6566716 6566960 -220957618 + L1M1 LINE L1 3466 3717 -3848 942 55 16 8 chr3 6566960 6567088 -220957490 + AluY SINE Alu 181 309 -2 3964 206 25 16 chr3 6567088 6568088 -220956490 + L1M1 LINE L1 3711 4719 -2846 345 276 57 0 chr3 6568826 6568931 -220955647 - MIR SINE MIR -2 260 150 824 168 28 10 chr3 6568931 6569213 -220955365 - MLT1A1 LTR MaLR 0 365 3 483 198 83 0 chr3 6569214 6569310 -220955268 - MIR SINE MIR -107 155 52 2209 115 0 0 chr3 6569778 6570074 -220954504 - AluSx SINE Alu -16 296 1 2261 116 0 0 chr3 6570141 6570435 -220954143 - AluSx SINE Alu -18 294 1 1805 177 17 0 chr3 6570970 6571269 -220953309 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr3 6571327 6571634 -220952944 + AluSx SINE Alu 1 302 -10 552 305 53 10 chr3 6571792 6572186 -220952392 + L1MEc LINE L1 1032 1442 -4954 554 308 108 71 chr3 6572441 6572931 -220951647 + L2 LINE L2 2805 3312 -1 2572 34 0 3 chr3 6573376 6573674 -220950904 - AluY SINE Alu -14 297 1 336 175 0 0 chr3 6576336 6576399 -220948179 + CT-rich Low_complexity Low_complexity 1 63 0 1531 176 0 22 chr3 6577502 6577769 -220946809 + AluJo SINE Alu 49 309 -3 193 292 14 69 chr3 6578484 6578556 -220946022 - L2 LINE L2 -5 3267 3200 2425 168 81 76 chr3 6578950 6579583 -220944995 - MER21B LTR ERV1 0 863 228 25 51 0 0 chr3 6579700 6579739 -220944839 + AT_rich Low_complexity Low_complexity 1 39 0 26 64 0 0 chr3 6580982 6581029 -220943549 + AT_rich Low_complexity Low_complexity 1 47 0 318 251 168 72 chr3 6581292 6581638 -220942940 - MLT1H LTR MaLR -148 401 23 197 108 27 0 chr3 6581690 6581727 -220942851 + CT-rich Low_complexity Low_complexity 3 40 0 1797 143 37 10 chr3 6581729 6582023 -220942555 - AluJo SINE Alu -10 302 1 1141 231 80 15 chr3 6582444 6582768 -220941810 + L2 LINE L2 2122 2466 -848 227 172 47 0 chr3 6582882 6582946 -220941632 - Charlie7 DNA MER1_type -1889 723 657 3548 173 6 6 chr3 6582962 6583626 -220940952 - L1MB2 LINE L1 -1 6170 5507 1452 295 142 10 chr3 6583631 6584378 -220940200 + L2 LINE L2 2447 3310 -3 375 283 29 7 chr3 6585356 6585494 -220939084 + L1ME3A LINE L1 6022 6162 -8 2045 153 3 0 chr3 6586128 6586429 -220938149 + AluJb SINE Alu 1 302 -10 343 248 94 16 chr3 6586691 6586819 -220937759 - MER5A DNA MER1_type -10 179 34 181 286 75 45 chr3 6586865 6586998 -220937580 - L2 LINE L2 -1689 1625 1489 200 254 28 56 chr3 6587156 6587227 -220937351 - MIR3 SINE MIR -14 194 126 329 309 29 37 chr3 6587304 6587440 -220937138 - L2 LINE L2 0 3272 3138 306 295 215 34 chr3 6587703 6587852 -220936726 - MER5A DNA MER1_type 0 189 14 213 209 0 23 chr3 6588870 6588913 -220935665 + (TG)n Simple_repeat Simple_repeat 1 42 0 413 287 149 37 chr3 6589478 6589666 -220934912 + MIR SINE MIR 27 235 -27 2457 64 0 0 chr3 6590318 6590616 -220933962 + AluY SINE Alu 1 298 -13 21 57 0 0 chr3 6592320 6592355 -220932223 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr3 6594874 6594897 -220929681 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 2349 116 0 0 chr3 6595815 6596126 -220928452 - AluSx SINE Alu -1 311 1 2866 71 8 0 chr3 6596160 6596538 -220928040 - L1PA7 LINE L1 0 6154 5774 927 184 35 6 chr3 6596638 6596812 -220927766 - MER21B LTR ERV1 -684 179 1 214 318 135 56 chr3 6596827 6596953 -220927625 + L2 LINE L2 3134 3269 -3 1704 153 3 36 chr3 6597312 6597470 -220927108 - AluJb SINE Alu -21 291 146 2392 99 0 0 chr3 6597470 6597773 -220926805 - AluSq SINE Alu -10 303 1 1704 153 3 36 chr3 6597773 6597915 -220926663 - AluJb SINE Alu -166 146 1 362 219 58 2 chr3 6598005 6598108 -220926470 - MIR SINE MIR -56 152 42 183 200 0 0 chr3 6598177 6598207 -220926371 + L2 LINE L2 3258 3287 -26 228 94 19 57 chr3 6598351 6598404 -220926174 - L2 LINE L2 -30 3242 3192 299 228 44 88 chr3 6599092 6599206 -220925372 - MIR SINE MIR -60 148 40 577 157 9 0 chr3 6599385 6599493 -220925085 + L1MC1 LINE L1 5752 5860 -473 303 286 25 25 chr3 6599509 6599628 -220924950 - L1MC/D LINE L1 -1991 5817 5699 694 307 95 4 chr3 6599636 6599867 -220924711 - MIR SINE MIR -10 252 1 3530 154 10 56 chr3 6599978 6600707 -220923871 - L1MC1 LINE L1 -3 6330 5636 201 264 38 0 chr3 6600805 6600858 -220923720 - MIR SINE MIR -41 221 167 2851 74 0 6 chr3 6600978 6601344 -220923234 - THE1B LTR MaLR 0 364 1 246 250 70 35 chr3 6602093 6602265 -220922313 + HAL1 LINE L1 1974 2151 -356 252 322 84 0 chr3 6602616 6602855 -220921723 - L1MC5 LINE L1 -66 7895 7637 706 168 26 0 chr3 6602910 6603023 -220921555 - FLAM_A SINE Alu -14 119 4 451 274 160 9 chr3 6603534 6603753 -220920825 - MIR SINE MIR -6 256 5 947 207 84 0 chr3 6603806 6604009 -220920569 + MIR SINE MIR 12 231 -31 1017 99 215 11 chr3 6605864 6605960 -220918618 + MER30 DNA MER1_type 1 76 -154 225 0 0 0 chr3 6605960 6605985 -220918593 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1017 99 215 11 chr3 6605985 6606079 -220918499 + MER30 DNA MER1_type 76 230 0 23 0 0 0 chr3 6606268 6606291 -220918287 + AT_rich Low_complexity Low_complexity 1 23 0 969 280 37 47 chr3 6606594 6607023 -220917555 - L2 LINE L2 -3 3310 2886 1885 150 7 3 chr3 6607110 6607396 -220917182 + AluJb SINE Alu 11 297 -15 1373 198 95 29 chr3 6607705 6607806 -220916772 - MLT1C LTR MaLR -2 465 372 2389 88 3 0 chr3 6607806 6608113 -220916465 - AluSx SINE Alu -4 308 1 1373 198 95 29 chr3 6608113 6608389 -220916189 - MLT1C LTR MaLR -95 372 63 1204 180 214 0 chr3 6608385 6608679 -220915899 + MLT1A1 LTR MaLR 9 365 0 * 251 167 0 0 chr3 6608679 6608721 -220915857 - MLT1C LTR MaLR -321 69 28 263 0 0 0 chr3 6608740 6608771 -220915807 - U7 snRNA snRNA -31 32 2 270 319 14 21 chr3 6608949 6609090 -220915488 - MIR SINE MIR -10 252 113 372 43 0 0 chr3 6610470 6610516 -220914062 + (CA)n Simple_repeat Simple_repeat 2 47 0 741 251 64 0 chr3 6610850 6611053 -220913525 + MIR SINE MIR 41 256 -6 1803 159 14 7 chr3 6611476 6611772 -220912806 - AluJb SINE Alu -10 302 5 1547 137 115 46 chr3 6612657 6613001 -220911577 - MSTA LTR MaLR 0 428 3 2179 119 0 0 chr3 6613158 6613460 -220911118 + AluSx SINE Alu 3 304 -8 2923 103 2 10 chr3 6613495 6613902 -220910676 - MER4A LTR ERV1 0 664 261 670 102 0 10 chr3 6613902 6614000 -220910578 - MER4A LTR ERV1 -566 98 2 825 225 56 70 chr3 6614332 6614658 -220909920 - L1ME3 LINE L1 -2 6164 5858 1097 171 0 0 chr3 6614663 6614833 -220909745 + AluJb SINE Alu 129 298 -14 258 200 154 0 chr3 6614833 6614898 -220909680 - L1ME3 LINE L1 -293 5869 5795 559 329 27 4 chr3 6614949 6615174 -220909404 - MIR SINE MIR -1 261 32 416 208 40 94 chr3 6615490 6615639 -220908939 - LTR67 LTR ERVL -4 553 413 2383 97 3 3 chr3 6615917 6616228 -220908350 - AluSq SINE Alu -2 311 1 194 310 35 0 chr3 6616810 6616868 -220907710 - L2 LINE L2 -64 3249 3190 326 273 78 19 chr3 6617338 6617492 -220907086 + MLT1J2 LTR MaLR 1 163 -287 1162 204 25 116 chr3 6617762 6618160 -220906418 - MLT1A1 LTR MaLR 0 365 4 1568 205 0 16 chr3 6618253 6618556 -220906022 + AluJb SINE Alu 1 298 -14 1392 266 133 61 chr3 6618557 6618597 -220905981 - HAL1 LINE L1 -6 2501 2465 1038 137 28 11 chr3 6618597 6618779 -220905799 + L1MB5 LINE L1 5981 6165 -9 1392 266 133 61 chr3 6618779 6620024 -220904554 - HAL1 LINE L1 -42 2465 1123 231 234 9 27 chr3 6620039 6620150 -220904428 + C-rich Low_complexity Low_complexity 3 111 0 813 168 4 0 chr3 6620164 6620411 -220904167 + CT-rich Low_complexity Low_complexity 1 248 0 359 280 40 30 chr3 6620585 6620685 -220903893 - MER58 DNA MER1_type -228 113 13 412 309 129 36 chr3 6620685 6621073 -220903505 - HAL1 LINE L1 -1845 662 239 180 0 0 0 chr3 6621232 6621252 -220903326 + (T)n Simple_repeat Simple_repeat 1 20 0 287 256 31 70 chr3 6621542 6621671 -220902907 + L2 LINE L2 2287 2410 -904 2433 126 67 12 chr3 6621683 6622089 -220902489 - MSTA LTR MaLR 0 428 1 409 328 95 25 chr3 6622106 6622661 -220901917 + L2 LINE L2 2695 3210 -103 2448 82 0 3 chr3 6622661 6622964 -220901614 - AluSc SINE Alu -7 302 1 2067 89 33 0 chr3 6622969 6623264 -220901314 - AluSc SINE Alu 0 304 1 264 243 126 9 chr3 6623388 6623499 -220901079 - L2 LINE L2 -2 3311 3188 2414 89 0 3 chr3 6624943 6625245 -220899333 + AluSx SINE Alu 6 306 -6 2556 60 0 3 chr3 6626106 6626408 -220898170 - AluY SINE Alu -10 301 1 954 131 15 0 chr3 6626575 6626712 -220897866 + FAM SINE Alu 32 170 -15 225 0 0 0 chr3 6626736 6626761 -220897817 + (TG)n Simple_repeat Simple_repeat 2 26 0 860 248 148 18 chr3 6626863 6627254 -220897324 - Charlie7 DNA MER1_type -1896 716 275 2085 130 0 7 chr3 6627379 6627672 -220896906 - AluSx SINE Alu -21 291 1 1318 144 9 5 chr3 6627828 6628043 -220896535 + AluSg/x SINE Alu 95 310 -2 808 298 25 0 chr3 6628676 6628918 -220895660 + MIR SINE MIR 13 260 -2 203 288 38 0 chr3 6628963 6629043 -220895535 + MIR SINE MIR 66 148 -114 229 331 0 32 chr3 6629224 6629348 -220895230 + L2 LINE L2 3138 3257 -15 290 0 75 0 chr3 6629739 6629779 -220894799 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 701 304 77 23 chr3 6629779 6630170 -220894408 + L2 LINE L2 2902 3313 0 720 237 179 24 chr3 6630531 6630860 -220893718 - MER20B DNA MER1_type -6 777 398 544 187 19 0 chr3 6630867 6630974 -220893604 + Ricksha DNA DNA 11 119 -1927 4348 127 78 45 chr3 6631001 6631113 -220893465 + Ricksha DNA DNA 2350 2457 -789 2047 113 3 7 chr3 6631113 6631438 -220893140 - AluSx SINE Alu 0 324 1 4348 127 78 45 chr3 6631438 6632186 -220892392 + Ricksha DNA DNA 2457 3239 -7 453 294 5 33 chr3 6632192 6632376 -220892202 - MER20B DNA MER1_type -373 410 232 699 186 8 8 chr3 6632378 6632502 -220892076 - AluJb SINE Alu -52 260 137 422 360 23 6 chr3 6632513 6632685 -220891893 - MER20B DNA MER1_type -554 229 55 693 270 60 36 chr3 6632908 6633241 -220891337 - MER102b DNA MER1_type 0 341 1 2257 105 7 3 chr3 6633481 6633787 -220890791 - AluSc SINE Alu -2 307 1 1731 158 14 11 chr3 6634766 6635051 -220889527 - AluJb SINE Alu -14 298 13 2077 103 0 15 chr3 6635322 6635594 -220888984 - AluSq SINE Alu -45 268 1 334 261 98 83 chr3 6635598 6635862 -220888716 - L1MC/D LINE L1 -441 5680 5559 2347 69 0 16 chr3 6635893 6636196 -220888382 - AluY SINE Alu -13 298 1 219 125 0 0 chr3 6636413 6636453 -220888125 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1896 82 58 0 chr3 6636455 6636698 -220887880 - AluSp SINE Alu -56 257 1 2207 92 14 0 chr3 6636997 6637280 -220887298 - AluSx SINE Alu -25 287 1 711 163 163 0 chr3 6637281 6637422 -220887156 - L1PA16 LINE L1 -127 6039 5876 252 308 158 0 chr3 6637906 6638039 -220886539 + MER5B DNA MER1_type 1 154 -24 308 209 15 0 chr3 6638134 6638201 -220886377 - MER5A DNA MER1_type -96 93 26 2203 114 10 0 chr3 6638214 6638513 -220886065 - AluSx SINE Alu -10 302 1 962 303 98 18 chr3 6639368 6639919 -220884659 + L2 LINE L2 2002 2596 -718 675 175 9 0 chr3 6639985 6640099 -220884479 + FLAM_A SINE Alu 1 115 -18 584 238 130 11 chr3 6640141 6640326 -220884252 + MER112 DNA MER1_type 54 260 0 355 259 18 36 chr3 6640342 6640454 -220884124 + MER5A DNA MER1_type 17 126 -63 230 257 18 62 chr3 6640483 6640596 -220883982 + L2 LINE L2 2599 2706 -608 244 262 16 0 chr3 6640735 6640796 -220883782 + MER5B DNA MER1_type 51 112 -66 945 292 41 62 chr3 6640865 6641331 -220883247 + L2 LINE L2 2856 3311 -2 565 181 124 0 chr3 6641451 6641642 -220882936 - FLAM_A SINE Alu 0 204 1 5934 73 11 14 chr3 6641662 6642456 -220882122 - L1PA14 LINE L1 -1 6160 5369 511 284 116 71 chr3 6643461 6643925 -220880653 - MLT1K LTR MaLR -99 489 5 764 278 48 44 chr3 6645117 6645387 -220879191 + LTR16A1 LTR ERVL 187 457 0 680 249 103 80 chr3 6645387 6645818 -220878760 - MLT1J LTR MaLR -70 441 1 374 280 99 33 chr3 6645874 6646056 -220878522 + MIR SINE MIR 3 196 -66 974 311 80 18 chr3 6646072 6646397 -220878181 - MSTA LTR MaLR 0 428 1 209 264 92 0 chr3 6646615 6646702 -220877876 - L2 LINE L2 -1366 1948 1854 534 306 17 69 chr3 6647870 6648158 -220876420 - Charlie8 DNA MER1_type -2144 273 1 1972 147 0 7 chr3 6649185 6649477 -220875101 + AluJb SINE Alu 1 290 -22 321 120 67 53 chr3 6649545 6649620 -220874958 - MER103 DNA DNA -76 90 15 215 301 137 0 chr3 6649776 6649849 -220874729 - L3 LINE CR1 -469 1108 1026 294 326 7 15 chr3 6649975 6650110 -220874468 - MIR SINE MIR -73 189 56 811 294 37 25 chr3 6650132 6650455 -220874123 + MER102b DNA MER1_type 9 335 -6 589 281 50 43 chr3 6650713 6651016 -220873562 - L1ME1 LINE L1 -53 6113 5809 267 93 0 0 chr3 6651332 6651375 -220873203 + (TG)n Simple_repeat Simple_repeat 2 44 0 4302 185 42 34 chr3 6651948 6652084 -220872494 + L1MB7 LINE L1 4825 4959 -1225 1923 125 68 0 chr3 6652084 6652363 -220872215 + AluJb SINE Alu 1 298 -14 4302 185 42 34 chr3 6652363 6653101 -220871477 + L1MB7 LINE L1 4959 5713 -471 1634 179 7 30 chr3 6653101 6653397 -220871181 + AluJb SINE Alu 17 305 -7 4302 185 42 34 chr3 6653397 6653857 -220870721 + L1MB7 LINE L1 5713 6168 -16 1037 96 32 26 chr3 6654075 6654231 -220870347 - L1PA16 LINE L1 0 6166 6010 2170 105 0 3 chr3 6654264 6654558 -220870020 - AluSc SINE Alu 0 309 17 2665 127 39 18 chr3 6654558 6655000 -220869578 - L1PA16 LINE L1 -381 5785 5335 1123 230 125 71 chr3 6655681 6655818 -220868760 + L1MC4 LINE L1 7385 7513 -529 1737 122 68 32 chr3 6655818 6656097 -220868481 - AluSg SINE Alu -21 289 1 1123 230 125 71 chr3 6656097 6656581 -220867997 + L1MC4 LINE L1 7513 8040 -2 2817 100 41 30 chr3 6657233 6657693 -220866885 - MER4C LTR ERV1 0 465 1 447 146 361 8 chr3 6658019 6658149 -220866429 + MER5A DNA MER1_type 14 189 0 301 307 0 0 chr3 6658176 6658264 -220866314 + MER5A DNA MER1_type 1 88 -101 3851 151 23 33 chr3 6658301 6659032 -220865546 - LTR8A LTR ERV1 -3 724 1 215 206 16 48 chr3 6659085 6659148 -220865430 + MER5B DNA MER1_type 116 176 -2 930 198 35 30 chr3 6659370 6659567 -220865011 + MER20 DNA MER1_type 4 201 -18 2243 110 7 7 chr3 6659567 6659877 -220864701 + AluSx SINE Alu 3 312 0 351 0 0 0 chr3 6659898 6659937 -220864641 + (TA)n Simple_repeat Simple_repeat 1 39 0 554 225 23 0 chr3 6661673 6661846 -220862732 + CT-rich Low_complexity Low_complexity 4 180 0 1797 108 116 0 chr3 6662198 6662456 -220862122 + AluSg SINE Alu 1 288 -22 222 274 0 0 chr3 6663661 6663712 -220860866 - MIR SINE MIR -17 245 195 1559 248 86 21 chr3 6663713 6664150 -220860428 + MLT1G1 LTR MaLR 13 436 -106 650 186 68 37 chr3 6664224 6664385 -220860193 - MIR SINE MIR -59 203 38 296 259 69 17 chr3 6664752 6664868 -220859710 - MIR SINE MIR -50 212 91 1013 198 23 14 chr3 6665963 6666180 -220858398 - MER20 DNA MER1_type 0 219 1 327 300 92 0 chr3 6666826 6666946 -220857632 + MIR SINE MIR 36 166 -96 608 253 104 0 chr3 6666957 6667139 -220857439 - L1MC4 LINE L1 -1323 6719 6519 30 0 0 0 chr3 6667356 6667386 -220857192 + AT_rich Low_complexity Low_complexity 1 30 0 433 278 124 27 chr3 6667740 6668039 -220856539 - L1ME LINE L1 -471 5699 5372 354 273 124 36 chr3 6668446 6668640 -220855938 - Tigger8 DNA MER2_type -399 267 57 2319 76 0 14 chr3 6669185 6669498 -220855080 - AluY SINE Alu 0 311 1 412 264 175 41 chr3 6669530 6669776 -220854802 - L2 LINE L2 -2 3311 3033 256 263 0 85 chr3 6670990 6671108 -220853470 - L1MC5 LINE L1 -48 7913 7806 237 191 59 29 chr3 6671527 6671595 -220852983 - MIR SINE MIR -113 149 80 1687 197 0 16 chr3 6671676 6671985 -220852593 + AluJo SINE Alu 1 304 -8 836 278 107 41 chr3 6672803 6673195 -220851383 - L2 LINE L2 -1 3312 2895 466 274 42 42 chr3 6673198 6673505 -220851073 - L2 LINE L2 -1474 1840 1534 180 125 0 0 chr3 6673904 6673936 -220850642 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 195 330 174 0 chr3 6674090 6674199 -220850379 - L2 LINE L2 -2 3311 3184 2724 179 24 12 chr3 6674859 6675361 -220849217 - MLT2B2 LTR ERVL -7 508 1 237 33 0 0 chr3 6677209 6677239 -220847339 + (GA)n Simple_repeat Simple_repeat 1 30 0 306 0 0 0 chr3 6677241 6677275 -220847303 + (TG)n Simple_repeat Simple_repeat 2 35 0 468 266 122 53 chr3 6677663 6678102 -220846476 - MLT1H1 LTR MaLR -13 542 48 719 215 0 0 chr3 6678524 6678645 -220845933 + FLAM_A SINE Alu 1 121 -12 229 309 37 0 chr3 6680089 6680170 -220844408 + MIR SINE MIR 3 86 -176 234 259 71 0 chr3 6681444 6681529 -220843049 - MIR SINE MIR -69 193 103 397 283 29 35 chr3 6681618 6681791 -220842787 - MIR SINE MIR -12 250 79 501 248 55 3 chr3 6682699 6682893 -220841685 + MER58 DNA MER1_type 1 2418 -2 660 297 14 5 chr3 6682933 6683145 -220841433 - MIR SINE MIR -41 221 8 205 159 91 0 chr3 6683404 6683448 -220841130 - MIR SINE MIR -111 151 104 634 164 102 8 chr3 6683671 6683799 -220840779 - FLAM_C SINE Alu -2 141 2 504 325 35 4 chr3 6684696 6684927 -220839651 - L1MC4a LINE L1 -1888 5920 5683 1259 169 49 4 chr3 6684999 6685224 -220839354 + MER46A DNA MER2_type 2 236 0 1399 237 132 56 chr3 6685260 6685611 -220838967 + L1ME3 LINE L1 4943 5266 -896 2093 134 7 0 chr3 6685611 6685902 -220838676 + AluSx SINE Alu 1 293 -19 1399 237 132 56 chr3 6685902 6686589 -220837989 + L1ME3 LINE L1 5266 6162 0 1653 147 45 18 chr3 6687493 6687779 -220836799 + AluJo SINE Alu 8 301 -11 210 323 21 0 chr3 6687849 6687945 -220836633 + MIR SINE MIR 100 197 -65 495 331 18 0 chr3 6687953 6688122 -220836456 - MIR SINE MIR -2 260 89 2236 101 3 13 chr3 6688455 6688753 -220835825 + AluSp SINE Alu 1 295 -18 266 206 32 58 chr3 6689907 6690062 -220834516 + (TTATA)n Simple_repeat Simple_repeat 4 154 0 1823 173 49 0 chr3 6690088 6690418 -220834160 - MER7A DNA MER2_type 0 346 3 393 275 123 34 chr3 6690490 6690726 -220833852 - L1MC4a LINE L1 -1773 6035 5779 442 269 31 8 chr3 6690809 6690939 -220833639 - L1MC4a LINE L1 -2280 5528 5396 527 277 98 94 chr3 6691003 6691717 -220832861 - L1ME3 LINE L1 0 6170 5451 2437 179 37 16 chr3 6691717 6692226 -220832352 - L1MB8 LINE L1 -1 6177 5658 527 277 98 94 chr3 6692226 6692362 -220832216 - L1ME3 LINE L1 -719 5451 5317 303 250 214 31 chr3 6692413 6692609 -220831969 - L1ME3 LINE L1 -905 5241 5010 342 0 0 0 chr3 6692932 6692970 -220831608 + (TG)n Simple_repeat Simple_repeat 2 39 0 2265 132 0 0 chr3 6693064 6693368 -220831210 - AluSx SINE Alu -8 304 1 242 262 16 0 chr3 6693805 6693866 -220830712 - HsTC2 DNA Tc2 -1824 74 13 736 243 77 0 chr3 6694106 6694275 -220830303 - MER58A DNA MER1_type -16 208 27 1924 152 0 26 chr3 6694685 6694987 -220829591 + AluSx SINE Alu 1 294 -18 257 258 0 15 chr3 6695844 6695910 -220828668 + MIR SINE MIR 190 254 -8 215 291 104 97 chr3 6695916 6696050 -220828528 + L2 LINE L2 3138 3272 0 2375 132 31 14 chr3 6696329 6696686 -220827892 - THE1B LTR MaLR 0 364 2 282 275 99 0 chr3 6696897 6696988 -220827590 + MIR SINE MIR 142 241 -21 215 327 114 27 chr3 6697220 6697440 -220827138 + MIR SINE MIR 20 258 -4 21 57 0 0 chr3 6697468 6697503 -220827075 + AT_rich Low_complexity Low_complexity 1 35 0 508 260 68 40 chr3 6698011 6698188 -220826390 - MIR3 SINE MIR -13 195 14 196 347 0 32 chr3 6698656 6698751 -220825827 - MIR3 SINE MIR -107 101 10 345 198 146 0 chr3 6698832 6698928 -220825650 - MER103 DNA DNA -51 115 6 1372 162 81 56 chr3 6699607 6699749 -220824829 + L1PA16 LINE L1 5876 6013 -153 2422 77 3 0 chr3 6699749 6700046 -220824532 + AluSp SINE Alu 1 298 -15 1372 162 81 56 chr3 6700046 6700187 -220824391 + L1PA16 LINE L1 6013 6166 0 2056 211 2 29 chr3 6700852 6701297 -220823281 - L1MD3 LINE L1 -9 7986 7554 243 223 134 45 chr3 6702388 6702500 -220822078 + MER113 DNA MER1_type? 218 339 -182 692 201 71 33 chr3 6702622 6702806 -220821772 + MIR SINE MIR 13 203 -59 1571 246 86 21 chr3 6702880 6703317 -220821261 - MLT1G1 LTR MaLR -106 436 13 260 294 0 0 chr3 6703318 6703386 -220821192 + MIR SINE MIR 195 262 0 197 290 17 137 chr3 6703496 6703796 -220820782 - L2 LINE L2 -46 3226 2963 315 203 106 57 chr3 6703824 6703947 -220820631 + MER113 DNA MER1_type? 218 346 -175 321 219 73 57 chr3 6705414 6705537 -220819041 - L1ME4a LINE L1 -11 6110 5986 240 35 0 0 chr3 6706277 6706306 -220818272 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2305 111 3 0 chr3 6706549 6706855 -220817723 + AluSx SINE Alu 1 307 -5 207 0 0 0 chr3 6707602 6707625 -220816953 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 653 277 72 44 chr3 6711404 6711653 -220812925 - MIR SINE MIR -1 261 6 2203 99 0 0 chr3 6712007 6712299 -220812279 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr3 6712451 6712479 -220812099 + AT_rich Low_complexity Low_complexity 1 28 0 291 283 22 43 chr3 6714976 6715068 -220809510 - MIR SINE MIR -79 129 40 552 202 11 0 chr3 6716412 6716514 -220808064 - L1ME3 LINE L1 -55 6107 5998 357 275 191 0 chr3 6716550 6716681 -220807897 - L2 LINE L2 0 3272 3117 258 56 0 0 chr3 6717544 6717580 -220806998 + (TA)n Simple_repeat Simple_repeat 2 37 0 242 89 44 0 chr3 6717602 6717647 -220806931 + LTR66 LTR ERVL 394 440 -170 332 366 12 30 chr3 6719274 6719303 -220805275 - MIR3 SINE MIR -25 183 155 2082 120 3 0 chr3 6719303 6719612 -220804966 + AluSx SINE Alu 1 310 -2 332 366 12 30 chr3 6719612 6719746 -220804832 - MIR3 SINE MIR -53 155 23 30 59 0 0 chr3 6719877 6719928 -220804650 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr3 6722386 6722421 -220802157 + AT_rich Low_complexity Low_complexity 1 35 0 1999 126 7 0 chr3 6722473 6722766 -220801812 - AluSx SINE Alu -17 295 1 26 0 0 0 chr3 6723930 6723956 -220800622 + AT_rich Low_complexity Low_complexity 1 26 0 1698 132 28 28 chr3 6724023 6724312 -220800266 - AluJo SINE Alu -23 289 1 364 300 111 37 chr3 6724316 6724506 -220800072 - L1ME3 LINE L1 -122 5999 5796 289 235 41 20 chr3 6724568 6724666 -220799912 - L1ME3 LINE L1 -466 5655 5556 236 350 12 0 chr3 6724750 6724830 -220799748 - MIR SINE MIR -113 149 69 2150 76 0 10 chr3 6724887 6725176 -220799402 - L1MA1 LINE L1 -1 6301 6016 619 242 124 0 chr3 6725621 6725774 -220798804 + MIR SINE MIR 66 237 -25 183 42 0 0 chr3 6726653 6726677 -220797901 + (A)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr3 6726712 6726735 -220797843 + (TG)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr3 6726808 6726857 -220797721 + (TG)n Simple_repeat Simple_repeat 2 50 0 436 241 20 79 chr3 6728714 6728917 -220795661 - L1MC5 LINE L1 -34 7927 7737 374 298 38 15 chr3 6730027 6730158 -220794420 - MIR SINE MIR -12 250 117 186 227 0 91 chr3 6730836 6730902 -220793676 - L2 LINE L2 -216 3056 2997 193 211 193 0 chr3 6731073 6731130 -220793448 + L2 LINE L2 3204 3271 -1 384 293 173 42 chr3 6731370 6731561 -220793017 + MIR SINE MIR 44 259 -3 311 259 0 0 chr3 6732041 6732099 -220792479 + L2 LINE L2 3215 3272 0 328 85 0 0 chr3 6732646 6732693 -220791885 - L1MB7 LINE L1 -8 6176 6130 537 323 12 6 chr3 6732767 6732934 -220791644 - MER91A DNA MER1_type -27 169 2 455 253 58 93 chr3 6734184 6734331 -220790247 + L1ME3 LINE L1 5946 6084 -78 2074 132 21 6 chr3 6734331 6734664 -220789914 + L1PA13 LINE L1 5826 6163 0 455 253 58 93 chr3 6734664 6734741 -220789837 + L1ME3 LINE L1 6084 6162 0 473 178 0 0 chr3 6735900 6735973 -220788605 - MER2 DNA MER2_type 0 345 273 185 294 39 0 chr3 6735992 6736043 -220788535 - MIR SINE MIR -133 129 77 1112 269 128 39 chr3 6736096 6736622 -220787956 - MLT1H1 LTR MaLR -5 548 1 408 247 33 60 chr3 6738611 6738761 -220785817 + MIR SINE MIR 28 173 -89 764 174 0 0 chr3 6739073 6739194 -220785384 - FLAM_A SINE Alu -11 122 2 31 0 0 0 chr3 6739197 6739228 -220785350 + AT_rich Low_complexity Low_complexity 1 31 0 369 43 0 0 chr3 6739442 6739489 -220785089 - MADE1 DNA Mariner 0 80 34 185 105 0 53 chr3 6739590 6739628 -220784950 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2028 91 0 4 chr3 6740252 6740567 -220784011 - AluSx SINE Alu 0 320 7 818 250 18 14 chr3 6740875 6741095 -220783483 + MER58A DNA MER1_type 1 221 -3 792 181 11 27 chr3 6741298 6741649 -220782929 + CT-rich Low_complexity Low_complexity 1 345 0 396 316 100 40 chr3 6742007 6742406 -220782172 + L2 LINE L2 2107 2529 -785 259 341 12 0 chr3 6742463 6742548 -220782030 - MIR SINE MIR -169 93 8 184 222 44 0 chr3 6742595 6742640 -220781938 + L2 LINE L2 2601 2647 -667 216 267 78 43 chr3 6743038 6743154 -220781424 + L2 LINE L2 3150 3269 -3 203 304 11 76 chr3 6743162 6743254 -220781324 + MIR SINE MIR 158 243 -19 371 313 9 0 chr3 6743701 6743816 -220780762 - MIR SINE MIR -92 170 55 412 195 114 57 chr3 6744547 6744670 -220779908 - MIR3 SINE MIR -69 139 10 189 107 0 0 chr3 6747165 6747193 -220777385 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr3 6748575 6748598 -220775980 + AT_rich Low_complexity Low_complexity 1 23 0 608 233 0 0 chr3 6749120 6749236 -220775342 - FLAM_A SINE Alu -17 116 1 531 282 62 66 chr3 6749254 6749559 -220775019 - L2 LINE L2 -19 3253 2950 240 289 72 40 chr3 6750247 6750399 -220774179 - MIR SINE MIR -34 228 72 189 0 0 0 chr3 6751608 6751629 -220772949 + (T)n Simple_repeat Simple_repeat 1 21 0 815 129 0 0 chr3 6751843 6751967 -220772611 - FLAM_C SINE Alu -9 134 11 2671 83 0 0 chr3 6752763 6753114 -220771464 - L1PA14 LINE L1 0 6161 5811 427 326 7 28 chr3 6753467 6753608 -220770970 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 6753991 6754211 -220770367 + MIR SINE MIR 8 245 -17 471 298 7 28 chr3 6755158 6755299 -220769279 + MIR3 SINE MIR 10 147 -61 403 163 12 12 chr3 6755933 6756013 -220768565 + MIR3 SINE MIR 82 161 -47 229 277 11 96 chr3 6756556 6756650 -220767928 + MIR3 SINE MIR 79 167 -41 519 217 32 106 chr3 6756870 6756954 -220767624 - L1ME2 LINE L1 -9 6155 6066 1804 194 77 58 chr3 6756954 6757450 -220767128 - MLT1D LTR MaLR 0 505 1 519 217 32 106 chr3 6757450 6757571 -220767007 - L1ME2 LINE L1 -98 6066 5964 2342 132 71 0 chr3 6757571 6757964 -220766614 - L1PA16 LINE L1 -5 6161 5741 252 186 0 34 chr3 6758609 6758668 -220765910 - FLAM_A SINE Alu -2 131 75 588 224 109 21 chr3 6758754 6758946 -220765632 - MIR SINE MIR -53 209 1 357 339 0 0 chr3 6759088 6759197 -220765381 - MIR SINE MIR -147 115 7 4086 84 20 32 chr3 6759210 6759807 -220764771 + L1PA10 LINE L1 5576 6165 -3 513 331 118 10 chr3 6760816 6761130 -220763448 - L2 LINE L2 0 3313 2966 705 118 0 0 chr3 6761377 6761487 -220763091 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 207 0 0 0 chr3 6761503 6761526 -220763052 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 918 155 94 75 chr3 6763657 6763870 -220760708 - MER20 DNA MER1_type -2 217 1 262 271 0 0 chr3 6763900 6763959 -220760619 - MIR SINE MIR 0 262 204 1205 168 72 50 chr3 6763983 6764245 -220760333 - AluJo SINE Alu -38 274 7 741 288 14 9 chr3 6764248 6764463 -220760115 - MIR SINE MIR -42 220 5 289 247 39 13 chr3 6764461 6764538 -220760040 + MIR SINE MIR 156 234 -28 * 234 162 0 0 chr3 6764629 6764666 -220759912 - MIR SINE MIR -59 149 113 2005 115 34 0 chr3 6765337 6765633 -220758945 - AluSx SINE Alu -1 311 6 187 209 0 0 chr3 6765894 6765937 -220758641 + L2 LINE L2 3270 3312 -1 358 219 289 0 chr3 6766098 6766212 -220758366 - MIR SINE MIR -108 154 8 256 284 68 0 chr3 6767701 6767775 -220756803 - L2 LINE L2 -186 3086 3008 185 319 0 0 chr3 6769435 6769504 -220755074 - L2 LINE L2 -9 3263 3195 570 279 132 6 chr3 6770602 6770886 -220753692 - L1MC4a LINE L1 -316 5805 5561 2032 99 31 7 chr3 6772516 6772808 -220751770 - AluSg SINE Alu -11 299 1 493 72 14 0 chr3 6776248 6776317 -220748261 + MADE1 DNA Mariner 1 70 -10 441 39 0 0 chr3 6776311 6776363 -220748215 - MADE1 DNA Mariner -27 53 2 * 630 262 126 19 chr3 6776456 6776670 -220747908 + MIR SINE MIR 14 250 -12 392 241 66 99 chr3 6778049 6778142 -220746436 + MIR SINE MIR 52 147 -115 1836 147 3 3 chr3 6778142 6778428 -220746150 + AluJb SINE Alu 4 289 -23 392 241 66 99 chr3 6778428 6778546 -220746032 + MIR SINE MIR 147 256 -6 300 230 40 14 chr3 6778873 6778947 -220745631 + MER117 DNA MER1_type 44 119 -78 366 302 82 80 chr3 6780438 6781002 -220743576 - L2 LINE L2 0 3272 2702 22 0 0 0 chr3 6781005 6781027 -220743551 + AT_rich Low_complexity Low_complexity 1 22 0 1977 106 10 51 chr3 6781037 6781348 -220743230 + AluSx SINE Alu 1 298 -14 343 250 92 58 chr3 6781595 6781715 -220742863 - MIR SINE MIR -114 148 25 378 327 31 25 chr3 6782099 6782258 -220742320 - MIR3 SINE MIR -13 195 36 751 237 72 10 chr3 6783423 6783617 -220740961 - MER3 DNA MER1_type -1 208 3 701 117 0 0 chr3 6783701 6783804 -220740774 + AluSg/x SINE Alu 208 310 -2 23 0 0 0 chr3 6783828 6783851 -220740727 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 6 43 chr3 6783851 6784175 -220740403 + AluSx SINE Alu 1 312 0 2225 110 0 0 chr3 6786046 6786356 -220738222 - AluSg SINE Alu 0 310 1 277 263 140 9 chr3 6786651 6786765 -220737813 + MIR3 SINE MIR 37 165 -43 2015 146 33 9 chr3 6787721 6788050 -220736528 - MER1B DNA MER1_type 0 337 1 1809 190 103 38 chr3 6788313 6788787 -220735791 - MLT1D LTR MaLR 0 505 1 2238 203 67 54 chr3 6788796 6789352 -220735226 - MLT1F1 LTR MaLR -4 563 1 285 216 135 0 chr3 6789842 6789916 -220734662 - L1MC5 LINE L1 -70 7891 7808 303 215 114 25 chr3 6790194 6790273 -220734305 + MIR3 SINE MIR 114 199 -9 491 329 7 0 chr3 6791874 6792011 -220732567 - MIR3 SINE MIR -41 167 30 223 309 0 37 chr3 6793162 6793243 -220731335 + MIR SINE MIR 31 108 -100 716 186 127 56 chr3 6794107 6794446 -220730132 - L1MC5 LINE L1 -34 7927 7565 3565 199 36 26 chr3 6794596 6795527 -220729051 + L1ME1 LINE L1 5196 6134 -32 233 304 180 12 chr3 6795528 6795666 -220728912 + MIR SINE MIR 7 164 -44 337 305 108 89 chr3 6796432 6796701 -220727877 - L2 LINE L2 -85 3187 2914 1946 141 0 20 chr3 6797920 6798247 -220726331 + AluSx SINE Alu 1 312 0 537 252 41 0 chr3 6798528 6798675 -220725903 + MER103 DNA DNA 2 154 -12 216 227 0 30 chr3 6798936 6798979 -220725599 + GA-rich Low_complexity Low_complexity 3 45 -21 1814 143 10 22 chr3 6798979 6799293 -220725285 + AluSx SINE Alu 1 310 -2 216 227 0 30 chr3 6799293 6799315 -220725263 + GA-rich Low_complexity Low_complexity 45 66 0 1707 142 184 6 chr3 6799383 6799742 -220724836 - MSTA LTR MaLR -2 426 4 2043 106 3 13 chr3 6800308 6800610 -220723968 - AluSx SINE Alu -13 299 1 898 289 100 22 chr3 6801504 6801913 -220722665 - MLT1K LTR MaLR -4 584 144 423 288 42 8 chr3 6803854 6803972 -220720606 + MIR SINE MIR 101 222 -40 263 247 56 34 chr3 6804498 6804587 -220719991 - L2 LINE L2 -29 3243 3153 487 262 48 12 chr3 6804646 6804817 -220719761 - MIR SINE MIR -69 139 10 820 335 67 23 chr3 6805384 6805859 -220718719 + L1ME4a LINE L1 5319 5814 -307 342 184 87 0 chr3 6805995 6806098 -220718480 + L1ME4a LINE L1 6008 6119 -2 517 269 60 7 chr3 6806482 6806631 -220717947 - MIR3 SINE MIR -15 193 37 524 251 134 67 chr3 6807033 6807256 -220717322 - MIR SINE MIR -1 261 24 384 273 132 57 chr3 6808138 6808365 -220716213 + L1ME LINE L1 5547 5790 -331 1708 171 10 3 chr3 6808478 6808776 -220715802 - AluJo SINE Alu -12 300 1 240 304 14 0 chr3 6809861 6809930 -220714648 - L2 LINE L2 -8 3264 3195 298 308 183 23 chr3 6810086 6810349 -220714229 - L2 LINE L2 -349 2965 2661 510 307 42 16 chr3 6811859 6812048 -220712530 + MIR SINE MIR 47 240 -22 1314 215 150 3 chr3 6812310 6812424 -220712154 - L1MC4 LINE L1 0 8042 7946 279 0 0 0 chr3 6812424 6812455 -220712123 + (CA)n Simple_repeat Simple_repeat 2 32 0 1314 215 150 3 chr3 6812455 6812888 -220711690 - L1MC4 LINE L1 -96 7946 7304 1436 159 4 17 chr3 6812888 6813127 -220711451 - AluSq SINE Alu -77 236 1 3541 217 114 31 chr3 6813127 6814093 -220710485 - L1MC4 LINE L1 -657 7385 6340 294 261 157 9 chr3 6814242 6814357 -220710221 - MIR SINE MIR -60 148 17 502 250 147 6 chr3 6815787 6815943 -220708635 - MER5A DNA MER1_type -3 186 9 309 260 114 16 chr3 6816311 6816434 -220708144 - MIR SINE MIR -113 149 15 297 230 135 48 chr3 6817894 6818020 -220706558 + MER117 DNA MER1_type 1 137 -60 264 282 19 19 chr3 6818465 6818568 -220706010 + MIR SINE MIR 36 138 -70 2153 141 34 44 chr3 6819814 6820225 -220704353 + L1MA4A LINE L1 5715 6121 -182 512 209 0 0 chr3 6820215 6820328 -220704250 + L1MA4A LINE L1 6044 6279 0 * 504 297 60 6 chr3 6820718 6820900 -220703678 - MIR SINE MIR -49 213 22 323 324 19 9 chr3 6824016 6824121 -220700457 + MIR3 SINE MIR 89 194 -14 1592 193 38 41 chr3 6825956 6826349 -220698229 - L1MC2 LINE L1 -5 6339 5948 2357 90 0 28 chr3 6826393 6826714 -220697864 - AluSx SINE Alu 0 312 1 357 132 0 0 chr3 6827531 6827570 -220697008 + (TC)n Simple_repeat Simple_repeat 1 42 -26 210 37 0 0 chr3 6827570 6827597 -220696981 + (CA)n Simple_repeat Simple_repeat 1 27 0 357 132 0 0 chr3 6827597 6827625 -220696953 + (TC)n Simple_repeat Simple_repeat 41 68 0 1471 118 113 17 chr3 6828846 6829084 -220695494 + AluSx SINE Alu 33 293 -19 274 333 42 33 chr3 6829469 6829589 -220694989 + L2 LINE L2 3151 3271 -1 1676 174 14 3 chr3 6830337 6830631 -220693947 - AluJo SINE Alu -15 297 1 202 267 0 0 chr3 6830658 6830703 -220693875 + L2 LINE L2 3182 3226 -87 183 245 20 0 chr3 6830742 6830791 -220693787 + L2 LINE L2 3204 3253 -60 740 225 116 0 chr3 6831789 6831962 -220692616 + MER58A DNA MER1_type 30 222 -2 1590 116 39 27 chr3 6832624 6832882 -220691696 + L1MB3 LINE L1 5923 6183 0 216 0 0 0 chr3 6833174 6833198 -220691380 + (T)n Simple_repeat Simple_repeat 1 24 0 408 303 8 16 chr3 6833841 6833963 -220690615 - L2 LINE L2 -1 3271 3151 2364 91 3 0 chr3 6835485 6835782 -220688796 + AluSp SINE Alu 2 299 -14 208 300 14 43 chr3 6835803 6835873 -220688705 - MIR3 SINE MIR -33 175 108 261 0 0 0 chr3 6836468 6836497 -220688081 + (T)n Simple_repeat Simple_repeat 1 29 0 428 302 37 135 chr3 6837898 6838246 -220686332 - L2 LINE L2 -1 3271 2958 2031 123 38 0 chr3 6838802 6839095 -220685483 - AluSx SINE Alu -8 304 1 189 0 0 0 chr3 6839513 6839534 -220685044 + (T)n Simple_repeat Simple_repeat 1 21 0 1096 174 56 0 chr3 6839869 6840047 -220684531 + MER5A DNA MER1_type 1 188 -1 1692 163 23 23 chr3 6840562 6840863 -220683715 - AluJb SINE Alu -11 301 1 271 279 123 0 chr3 6841444 6841566 -220683012 - MIR SINE MIR -27 235 99 23 0 0 0 chr3 6843903 6843926 -220680652 + AT_rich Low_complexity Low_complexity 1 23 0 270 185 46 46 chr3 6846272 6846337 -220678241 - MIR SINE MIR -63 145 81 251 397 64 14 chr3 6847838 6848057 -220676521 + MIR SINE MIR 2 231 -31 2126 148 0 0 chr3 6848403 6848706 -220675872 + AluSx SINE Alu 1 303 -9 4172 141 28 82 chr3 6848942 6849128 -220675450 + LTR39 LTR ERV1 1 195 -588 1709 138 0 4 chr3 6849128 6849454 -220675124 + AluJb SINE Alu 38 362 0 4172 141 28 82 chr3 6849454 6850083 -220674495 + LTR39 LTR ERV1 195 773 -10 193 305 51 76 chr3 6850676 6850728 -220673850 - MIR SINE MIR -58 150 98 2334 105 3 6 chr3 6850728 6851041 -220673537 + AluSp SINE Alu 1 312 -1 193 305 51 76 chr3 6851041 6851106 -220673472 - MIR SINE MIR -110 98 36 2706 134 38 14 chr3 6852040 6852458 -220672120 + MSTA LTR MaLR 1 428 0 881 233 61 5 chr3 6852458 6852733 -220671845 + L1MC/D LINE L1 5517 5810 -372 1798 149 41 17 chr3 6852996 6853440 -220671138 - MLT1D LTR MaLR 0 505 1 249 33 0 0 chr3 6853703 6853733 -220670845 + (CA)n Simple_repeat Simple_repeat 2 31 0 576 149 62 195 chr3 6853958 6854208 -220670370 - L1M4 LINE L1 -774 5372 5191 881 154 23 0 chr3 6854208 6854338 -220670240 - FLAM_C SINE Alu 0 133 1 576 149 62 195 chr3 6854338 6854476 -220670102 - L1M4 LINE L1 -955 5191 5036 933 184 0 26 chr3 6854476 6854666 -220669912 + MER3 DNA MER1_type 1 185 -24 1121 205 19 19 chr3 6854683 6854951 -220669627 - L1M4 LINE L1 -1103 5043 4776 810 208 0 0 chr3 6854958 6855107 -220669471 + L1MB1 LINE L1 4843 4991 -1155 312 140 0 0 chr3 6855107 6855157 -220669421 + FLAM_A SINE Alu 83 132 -1 708 173 0 0 chr3 6855159 6855269 -220669309 + AluJo/FRAM SINE Alu 201 310 -2 4940 146 26 57 chr3 6855271 6855629 -220668949 + L1MB1 LINE L1 4980 5347 -821 1868 164 0 16 chr3 6855629 6855934 -220668644 + AluJb SINE Alu 4 303 -9 4940 146 26 57 chr3 6855934 6856758 -220667820 + L1MB1 LINE L1 5347 6145 -23 8298 227 82 23 chr3 6856784 6857299 -220667279 - L1M4 LINE L1 -1379 4767 4283 2240 73 0 0 chr3 6857299 6857572 -220667006 - AluY SINE Alu -38 273 1 8298 227 82 23 chr3 6857572 6858204 -220666374 - L1M4 LINE L1 -1863 4283 3689 1673 180 3 40 chr3 6858204 6858526 -220666052 - AluJo SINE Alu -2 310 1 8298 227 82 23 chr3 6858526 6859816 -220664762 - L1M4 LINE L1 -2457 3689 2187 651 294 64 80 chr3 6860074 6860527 -220664051 + L2 LINE L2 2224 2669 -645 310 323 71 95 chr3 6860564 6860973 -220663605 + L2 LINE L2 2812 3210 -62 1488 131 57 4 chr3 6861849 6862093 -220662485 - Tigger2 DNA MER2_type 0 2718 2462 4203 108 49 88 chr3 6862136 6862910 -220661668 - Tigger2 DNA MER2_type -1974 744 1 360 244 94 131 chr3 6864791 6865196 -220659382 + L1M2 LINE L1 740 1129 -5720 2140 114 10 0 chr3 6865637 6865934 -220658644 - AluSx SINE Alu -12 300 1 1821 154 3 28 chr3 6865959 6866278 -220658300 - AluJo SINE Alu -1 311 1 2067 135 3 0 chr3 6867119 6867416 -220657162 - AluSx SINE Alu -14 298 1 275 326 122 7 chr3 6868473 6868620 -220655958 - MIR3 SINE MIR -21 187 24 388 241 169 42 chr3 6868706 6868872 -220655706 + MLT1H1 LTR MaLR 49 235 -320 1379 80 6 6 chr3 6868876 6869052 -220655526 + AluSp SINE Alu 1 176 -137 207 0 0 0 chr3 6869056 6869079 -220655499 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2297 115 0 0 chr3 6869173 6869485 -220655093 - AluSx SINE Alu 0 312 1 289 196 0 0 chr3 6869495 6869546 -220655032 + MLT1H1 LTR MaLR 430 480 -75 274 295 0 0 chr3 6869823 6869884 -220654694 - MLT1G1 LTR MaLR 0 555 495 792 126 79 8 chr3 6869884 6870011 -220654567 - AluJo SINE Alu -175 137 2 835 234 128 95 chr3 6870011 6870527 -220654051 - MLT1G1 LTR MaLR -59 536 4 228 263 38 100 chr3 6872632 6872792 -220651786 + MIR SINE MIR 100 249 -13 * 441 268 180 3 chr3 6872774 6872947 -220651631 - MIR SINE MIR -49 213 19 2299 77 0 0 chr3 6873067 6873340 -220651238 + AluSc SINE Alu 25 297 -12 5625 29 0 0 chr3 6874118 6874731 -220649847 + L1PA3 LINE L1 5540 6152 -3 664 117 19 19 chr3 6875038 6875141 -220649437 - U13 snRNA snRNA -1 103 1 2223 122 0 0 chr3 6875571 6875866 -220648712 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr3 6876064 6876088 -220648490 + (A)n Simple_repeat Simple_repeat 1 24 0 690 90 34 0 chr3 6876483 6876572 -220648006 - FLAM_C SINE Alu -26 117 26 331 313 96 72 chr3 6878324 6878825 -220645753 + L1MC4a LINE L1 4810 5322 -824 1072 228 153 50 chr3 6878856 6879313 -220645265 + L1MC4a LINE L1 5437 5940 -1868 1820 175 6 19 chr3 6879411 6879725 -220644853 + AluJb SINE Alu 1 310 -2 273 253 82 123 chr3 6880648 6880794 -220643784 + L2 LINE L2 3133 3272 0 297 140 40 0 chr3 6882319 6882369 -220642209 + FLAM SINE Alu 78 129 -4 207 383 103 3 chr3 6882671 6882961 -220641617 + L2 LINE L2 2331 2649 -665 1891 149 20 0 chr3 6882985 6883281 -220641297 - AluJb SINE Alu -10 302 1 225 350 137 38 chr3 6883500 6883814 -220640764 + L2 LINE L2 2928 3272 0 27 62 0 0 chr3 6884149 6884197 -220640381 + AT_rich Low_complexity Low_complexity 1 48 0 1589 187 32 18 chr3 6884377 6884655 -220639923 + AluJo SINE Alu 1 282 -30 398 270 22 58 chr3 6884672 6884809 -220639769 - MER5A DNA MER1_type -49 140 9 208 234 0 43 chr3 6884804 6884851 -220639727 - L3 LINE CR1 -17 1560 1516 * 283 274 53 32 chr3 6884853 6884948 -220639630 + MER5A DNA MER1_type 74 170 -19 194 311 66 57 chr3 6884854 6884976 -220639602 - MER5A DNA MER1_type -63 126 4 * 2518 211 29 49 chr3 6885058 6885607 -220638971 + MLT1F LTR MaLR 5 542 0 587 288 27 68 chr3 6886987 6887169 -220637409 + MIR SINE MIR 14 187 -75 2174 111 16 7 chr3 6887169 6887476 -220637102 + AluSx SINE Alu 1 310 -2 587 288 27 68 chr3 6887476 6887515 -220637063 + MIR SINE MIR 187 226 -36 813 170 0 15 chr3 6888346 6888481 -220636097 + FLAM_C SINE Alu 1 133 0 483 281 98 41 chr3 6888816 6889304 -220635274 + L1M4 LINE L1 4487 5002 -1144 1866 117 38 0 chr3 6889424 6889690 -220634888 + AluSq SINE Alu 1 276 -37 5862 89 11 39 chr3 6889735 6890613 -220633965 + L1PA14 LINE L1 5308 6161 0 573 189 53 95 chr3 6890794 6890819 -220633759 + MER58B DNA MER1_type 180 204 -2216 2069 142 0 13 chr3 6890819 6891128 -220633450 + AluSx SINE Alu 2 306 -6 573 189 53 95 chr3 6891128 6891271 -220633307 + MER58B DNA MER1_type 204 341 0 1393 242 79 12 chr3 6891312 6891789 -220632789 + MLT1E LTR MaLR 55 593 0 1926 120 11 14 chr3 6891905 6892268 -220632310 + AluSx SINE Alu 2 363 0 622 252 68 68 chr3 6892315 6892543 -220632035 + MLT1L LTR MaLR 327 557 -58 917 229 88 5 chr3 6892543 6892748 -220631830 + MER58A DNA MER1_type 2 223 -1 622 252 68 68 chr3 6892748 6892797 -220631781 + MLT1L LTR MaLR 556 604 -11 2009 171 16 30 chr3 6892867 6893235 -220631343 - MLT1A1 LTR MaLR -2 363 1 1801 205 123 30 chr3 6893262 6893759 -220630819 - L1ME3A LINE L1 -10 6160 5618 2275 102 0 3 chr3 6893871 6894166 -220630412 + AluSx SINE Alu 1 294 -18 1920 140 48 0 chr3 6894175 6894468 -220630110 + AluSx SINE Alu 1 307 -5 210 143 0 0 chr3 6894468 6894503 -220630075 + (GA)n Simple_repeat Simple_repeat 1 35 0 288 111 0 0 chr3 6895397 6895442 -220629136 + (GA)n Simple_repeat Simple_repeat 2 46 0 439 280 21 21 chr3 6896145 6896288 -220628290 - MIR SINE MIR -82 180 38 618 163 162 23 chr3 6897035 6897194 -220627384 - MER58C DNA MER1_type 0 215 31 1705 136 41 14 chr3 6897596 6897890 -220626688 - AluJb SINE Alu -10 302 1 2191 93 21 0 chr3 6898048 6898328 -220626250 + AluSc SINE Alu 8 293 -16 1196 164 0 29 chr3 6899073 6899281 -220625297 + AluJo SINE Alu 83 284 -28 441 0 0 0 chr3 6899285 6899334 -220625244 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 60 0 0 chr3 6899358 6899408 -220625170 + AT_rich Low_complexity Low_complexity 1 50 0 313 149 27 54 chr3 6899763 6899837 -220624741 - MER116 DNA Mariner 0 80 9 630 214 0 0 chr3 6900142 6900245 -220624333 - FLAM_A SINE Alu -36 106 4 343 259 37 44 chr3 6900333 6900352 -220624226 - MIR SINE MIR 0 262 244 1294 160 173 30 chr3 6900352 6900652 -220623926 + MER2 DNA MER2_type 2 344 0 343 259 37 44 chr3 6900652 6900767 -220623811 - MIR SINE MIR -18 244 129 233 296 68 0 chr3 6901003 6901091 -220623487 + MIR SINE MIR 84 177 -85 1880 170 0 3 chr3 6902136 6902447 -220622131 + AluJb SINE Alu 1 310 -2 254 288 0 0 chr3 6903214 6903280 -220621298 + (TA)n Simple_repeat Simple_repeat 1 66 0 1721 169 10 23 chr3 6903293 6903601 -220620977 - AluJo SINE Alu -8 304 1 214 313 40 30 chr3 6904464 6904563 -220620015 - MIR SINE MIR -64 144 45 472 291 86 29 chr3 6905075 6905250 -220619328 + MIR3 SINE MIR 16 200 -8 282 287 21 11 chr3 6905505 6905599 -220618979 - MLT1K LTR MaLR -36 552 458 257 270 108 0 chr3 6905744 6905855 -220618723 - MLT1L LTR MaLR -310 305 183 227 241 37 0 chr3 6905894 6905948 -220618630 - MLT1L LTR MaLR -418 197 142 195 42 0 0 chr3 6906135 6906159 -220618419 + (GAATG)n Simple_repeat Simple_repeat 2 25 0 182 246 311 16 chr3 6906987 6907048 -220617530 - L2 LINE L2 -87 3185 3107 1985 38 0 0 chr3 6907165 6907404 -220617174 - L1P LINE L1 -1626 4520 4282 242 303 53 13 chr3 6907448 6907524 -220617054 - L2 LINE L2 -200 3072 2994 2020 135 7 0 chr3 6908882 6909186 -220615392 + AluSx SINE Alu 5 310 -2 2078 117 85 70 chr3 6909480 6909519 -220615059 - MSTA LTR MaLR 0 428 391 2268 103 3 3 chr3 6909519 6909820 -220614758 + AluSx SINE Alu 1 301 -11 2078 117 85 70 chr3 6909820 6909854 -220614724 - MSTA LTR MaLR -37 391 359 2104 131 0 3 chr3 6909854 6910144 -220614434 + AluSx SINE Alu 1 289 -23 2078 117 85 70 chr3 6910144 6910481 -220614097 - MSTA LTR MaLR -69 359 11 856 257 10 10 chr3 6911353 6911559 -220613019 - MLT1A1 LTR MaLR 0 365 160 2224 121 0 0 chr3 6911579 6911877 -220612701 - AluSx SINE Alu -14 298 1 448 52 0 17 chr3 6911877 6911935 -220612643 - MSTC LTR MaLR -371 57 1 2566 115 54 79 chr3 6912068 6912344 -220612234 - MLT1C LTR MaLR 0 467 207 1549 178 3 53 chr3 6912344 6912665 -220611913 - AluJo SINE Alu -7 305 1 2566 115 54 79 chr3 6912665 6912867 -220611711 - MLT1C LTR MaLR -260 207 1 31593 29 12 1 chr3 6913079 6919112 -220605466 + L1HS LINE L1 1 6155 0 24 0 0 0 chr3 6919112 6919136 -220605442 + AT_rich Low_complexity Low_complexity 1 24 0 441 246 84 26 chr3 6919188 6919342 -220605236 - MIR3 SINE MIR -1 207 37 594 274 50 50 chr3 6919655 6920228 -220604350 + L1MC5 LINE L1 7249 7739 -222 441 137 0 0 chr3 6920245 6920318 -220604260 + L1PB4 LINE L1 6070 6142 -14 805 172 0 0 chr3 6920330 6920458 -220604120 + FLAM_C SINE Alu 1 128 -5 311 257 125 14 chr3 6920478 6920622 -220603956 + L1MC4 LINE L1 7878 8037 -5 279 0 0 0 chr3 6920712 6920743 -220603835 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2381 101 0 3 chr3 6920753 6921061 -220603517 - AluSg SINE Alu -3 307 1 351 249 26 74 chr3 6921191 6921380 -220603198 + L1MC4a LINE L1 5750 5929 -1879 2366 189 37 2 chr3 6921448 6921967 -220602611 + L1MB7 LINE L1 4012 4548 -1598 868 123 23 8 chr3 6921973 6922103 -220602475 - FLAM_C SINE Alu -11 132 1 3907 183 56 46 chr3 6922106 6923737 -220600841 + L1MB7 LINE L1 4542 6179 -5 360 0 0 0 chr3 6924309 6924349 -220600229 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 97 0 0 chr3 6924349 6924380 -220600198 + (GA)n Simple_repeat Simple_repeat 2 32 0 423 192 135 16 chr3 6925002 6925168 -220599410 - MLT1H LTR MaLR -8 547 346 2173 109 10 0 chr3 6925293 6925596 -220598982 - AluY SINE Alu -5 306 1 2208 218 25 25 chr3 6926287 6926592 -220597986 - L1MB8 LINE L1 -9 6169 5862 1995 127 39 0 chr3 6926592 6926876 -220597702 - AluJb SINE Alu -17 295 1 2208 218 25 25 chr3 6926876 6927177 -220597401 - L1MB8 LINE L1 -315 5863 5563 1319 241 129 33 chr3 6928028 6928579 -220595999 + L1MC4 LINE L1 7160 7763 -279 733 194 0 15 chr3 6928586 6928720 -220595858 + FLAM_C SINE Alu 2 133 0 234 91 0 0 chr3 6928864 6928897 -220595681 + (A)n Simple_repeat Simple_repeat 1 33 0 348 202 106 0 chr3 6928898 6928992 -220595586 + L1MD3 LINE L1 7883 7986 -9 1482 144 53 46 chr3 6929008 6929292 -220595286 + AluJb SINE Alu 1 286 -26 270 115 0 0 chr3 6929292 6929344 -220595234 + (CATA)n Simple_repeat Simple_repeat 4 55 0 567 261 26 53 chr3 6929354 6929580 -220594998 + L1ME3 LINE L1 5936 6155 -7 2337 97 0 0 chr3 6929999 6930298 -220594280 + AluSc SINE Alu 1 299 -10 180 111 0 0 chr3 6930408 6930435 -220594143 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 565 174 147 0 chr3 6930563 6930672 -220593906 + FLAM_A SINE Alu 1 125 -8 611 258 32 81 chr3 6930732 6930980 -220593598 + MLT1J LTR MaLR 236 471 -40 2109 159 46 7 chr3 6931072 6931511 -220593067 + L1MB3 LINE L1 5725 6180 -3 40 0 0 0 chr3 6931512 6931552 -220593026 + AT_rich Low_complexity Low_complexity 1 40 0 2143 134 0 0 chr3 6931558 6931864 -220592714 + AluSx SINE Alu 1 306 -6 1126 261 90 23 chr3 6931872 6932437 -220592141 + L2 LINE L2 2712 3311 -2 294 293 116 56 chr3 6933343 6933575 -220591003 - L2 LINE L2 -882 2432 2187 805 309 91 40 chr3 6933624 6934268 -220590310 + L2 LINE L2 2606 3280 -33 27 62 0 0 chr3 6934281 6934329 -220590249 + AT_rich Low_complexity Low_complexity 1 48 0 568 328 76 4 chr3 6934419 6934681 -220589897 - L2 LINE L2 -1163 2151 1871 417 221 265 52 chr3 6934824 6934960 -220589618 - MLT1H LTR MaLR -17 532 361 799 251 5 10 chr3 6934964 6935159 -220589419 - MER58A DNA MER1_type 0 224 31 393 245 108 57 chr3 6935219 6935466 -220589112 - MLT1H LTR MaLR -217 332 31 2381 82 0 22 chr3 6935641 6935956 -220588622 + AluSq SINE Alu 1 308 -5 2257 130 0 9 chr3 6936564 6936879 -220587699 + AluSq SINE Alu 1 312 -1 943 172 18 0 chr3 6936892 6937055 -220587523 + FAM SINE Alu 1 166 -9 856 164 0 8 chr3 6937301 6937435 -220587143 + FLAM_A SINE Alu 1 133 0 1824 158 3 3 chr3 6937633 6937924 -220586654 + AluJb SINE Alu 1 291 -21 1273 321 60 23 chr3 6937938 6939560 -220585018 + L1M4 LINE L1 2938 4618 -1528 507 202 0 0 chr3 6939577 6939701 -220584877 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 24 53 0 0 chr3 6939709 6939747 -220584831 + AT_rich Low_complexity Low_complexity 1 38 0 276 159 57 0 chr3 6939750 6939838 -220584740 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 241 265 15 0 chr3 6939850 6939982 -220584596 + (TA)n Simple_repeat Simple_repeat 1 134 0 329 343 79 6 chr3 6940008 6940186 -220584392 + L1M4 LINE L1 4672 4862 -1284 1183 192 76 10 chr3 6940186 6940477 -220584101 - L1MC/D LINE L1 -2150 5658 5349 937 218 56 53 chr3 6940482 6940840 -220583738 - L1ME2 LINE L1 0 6164 5806 3238 230 100 72 chr3 6940886 6941967 -220582611 + L1MC4 LINE L1 6502 7551 -491 2002 127 7 13 chr3 6941967 6942267 -220582311 + AluJb SINE Alu 1 298 -14 3238 230 100 72 chr3 6942267 6942467 -220582111 + L1MC4 LINE L1 7551 7744 -298 2287 65 41 0 chr3 6942467 6942757 -220581821 - AluY SINE Alu -9 302 1 3238 230 100 72 chr3 6942757 6942973 -220581605 + L1MC4 LINE L1 7744 8042 0 1238 149 159 62 chr3 6942980 6943256 -220581322 - AluJo SINE Alu -9 303 1 513 249 60 55 chr3 6943495 6943696 -220580882 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6943736 6943783 -220580795 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 314 261 153 51 chr3 6944165 6944322 -220580256 - MER5A DNA MER1_type 0 189 17 1712 159 10 20 chr3 6944670 6944965 -220579613 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6945009 6945107 -220579471 + (TG)n Simple_repeat Simple_repeat 2 97 0 427 299 25 25 chr3 6945255 6945412 -220579166 - MIR SINE MIR -1 261 105 264 246 65 58 chr3 6945518 6945656 -220578922 - L2 LINE L2 -4 3309 3171 1583 186 17 7 chr3 6945661 6945962 -220578616 + AluJo SINE Alu 1 304 -8 216 292 258 0 chr3 6946070 6946159 -220578419 + L2 LINE L2 3201 3312 -1 378 200 51 131 chr3 6946400 6946575 -220578003 + MER103 DNA DNA 3 163 -3 493 257 138 0 chr3 6946619 6946771 -220577807 - MER96 DNA MER1_type 0 175 3 2078 150 0 10 chr3 6947115 6947429 -220577149 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6947478 6947537 -220577041 + L2 LINE L2 3246 3313 0 2108 101 4 0 chr3 6947892 6948169 -220576409 - AluSx SINE Alu -2 310 33 1507 46 10 15 chr3 6948214 6948411 -220576167 - MER107 DNA MER1_type 0 197 2 2344 84 0 0 chr3 6948489 6948785 -220575793 - AluSx SINE Alu -16 296 1 699 337 112 9 chr3 6950296 6950724 -220573854 + L2 LINE L2 2808 3287 -26 1478 199 56 11 chr3 6950724 6951081 -220573497 + MLT1A2 LTR MaLR 1 373 -1 699 337 112 9 chr3 6951081 6951109 -220573469 + L2 LINE L2 3287 3311 -2 253 116 23 0 chr3 6951504 6951547 -220573031 - MER4E LTR ERV1 -96 670 627 2193 89 0 3 chr3 6951564 6951868 -220572710 - L1PB1 LINE L1 -1 6150 5848 474 276 31 10 chr3 6952196 6952363 -220572215 - MIR SINE MIR -2 260 91 2317 113 0 0 chr3 6952375 6952677 -220571901 + AluSx SINE Alu 1 302 -10 226 207 17 52 chr3 6952953 6953011 -220571567 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6953937 6954067 -220570511 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6954214 6954253 -220570325 + (TG)n Simple_repeat Simple_repeat 1 39 0 431 306 80 17 chr3 6954479 6954780 -220569798 + L1ME2 LINE L1 81 400 -6023 1577 244 58 87 chr3 6955141 6956120 -220568458 + L1ME2 LINE L1 1156 2162 -4779 2399 86 0 3 chr3 6956120 6956424 -220568154 + AluSg SINE Alu 1 303 -7 1577 244 58 87 chr3 6956424 6956601 -220567977 + L1ME2 LINE L1 2162 2343 -4598 2239 118 7 0 chr3 6956601 6956906 -220567672 + AluSx SINE Alu 1 307 -5 2435 99 0 0 chr3 6956906 6957219 -220567359 + AluSp SINE Alu 1 313 0 1577 244 58 87 chr3 6957219 6957513 -220567065 + L1ME2 LINE L1 2342 2643 -4298 847 257 5 0 chr3 6957513 6957700 -220566878 + MER5A DNA MER1_type 2 189 0 1577 244 58 87 chr3 6957700 6957785 -220566793 + L1ME2 LINE L1 2643 2729 -4212 1936 163 0 3 chr3 6957785 6958098 -220566480 + AluSx SINE Alu 1 312 0 823 159 0 0 chr3 6958108 6958234 -220566344 + FLAM_C SINE Alu 1 126 -7 1577 244 58 87 chr3 6958234 6958468 -220566110 + L1ME2 LINE L1 2738 2977 -3964 1681 157 82 0 chr3 6958468 6958748 -220565830 + AluJo SINE Alu 1 303 -9 1577 244 58 87 chr3 6958748 6958967 -220565611 + L1ME2 LINE L1 2977 3201 -3740 2342 112 3 0 chr3 6958967 6959279 -220565299 + AluSp SINE Alu 1 313 0 1577 244 58 87 chr3 6959279 6959326 -220565252 + L1ME2 LINE L1 3201 3248 -3693 1657 194 3 46 chr3 6959326 6959651 -220564927 + AluJo SINE Alu 1 311 -1 1577 244 58 87 chr3 6959651 6959925 -220564653 + L1ME2 LINE L1 3248 3569 -3372 333 191 4 2 chr3 6959927 6960184 -220564394 + AluJo SINE Alu 1 300 -2 547 188 8 29 chr3 6960224 6960390 -220564188 + L1MD2 LINE L1 5423 5573 -610 186 43 0 0 chr3 6960824 6960847 -220563731 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1693 198 21 5 chr3 6960847 6961221 -220563357 + L1MD2 LINE L1 5556 5935 -307 720 157 22 22 chr3 6961240 6961374 -220563204 - AluJo SINE Alu -178 134 1 1710 189 28 46 chr3 6961374 6961781 -220562797 + L1MD2 LINE L1 5922 6322 -37 1777 171 7 11 chr3 6961781 6962067 -220562511 - AluJb SINE Alu -27 285 1 1710 189 28 46 chr3 6962067 6962092 -220562486 + L1MD2 LINE L1 6322 6346 -13 510 240 21 10 chr3 6962095 6962287 -220562291 + L1ME2 LINE L1 3633 3826 -3115 26924 62 4 6 chr3 6962307 6968464 -220556114 + L1PA4 LINE L1 11 6155 0 1293 279 95 2 chr3 6968470 6969048 -220555530 + L1ME2 LINE L1 3824 4455 -2486 3358 235 73 29 chr3 6969054 6969557 -220555021 + L1ME2 LINE L1 4940 5419 -1540 1760 114 38 0 chr3 6969557 6969821 -220554757 - AluSx SINE Alu -21 291 18 3358 235 73 29 chr3 6969821 6971250 -220553328 + L1ME2 LINE L1 5419 6959 0 186 291 236 31 chr3 6971310 6971437 -220553141 + L3 LINE CR1 554 706 -871 1141 121 0 0 chr3 6971496 6971662 -220552916 - AluSg/x SINE Alu -9 303 138 534 111 12 12 chr3 6971762 6971843 -220552735 - AluY SINE Alu -233 85 5 517 260 52 19 chr3 6971853 6972007 -220552571 - MER112 DNA MER1_type -12 248 90 2008 135 0 16 chr3 6972025 6972337 -220552241 - AluSq SINE Alu -6 307 1 282 222 16 0 chr3 6972505 6972568 -220552010 - MER112 DNA MER1_type -187 73 10 402 252 53 8 chr3 6972835 6972966 -220551612 - MER91C DNA MER1_type 0 140 4 409 267 79 43 chr3 6972969 6973138 -220551440 + MIR SINE MIR 8 191 -17 207 302 79 0 chr3 6973104 6973167 -220551411 + L2 LINE L2 3242 3309 -4 * 231 277 12 48 chr3 6973155 6973238 -220551340 + MIR SINE MIR 134 213 -49 200 292 219 10 chr3 6974623 6974719 -220549859 + L2 LINE L2 3155 3270 -2 274 181 74 44 chr3 6975712 6975815 -220548763 - MIR SINE MIR -61 147 63 187 315 81 54 chr3 6975968 6976079 -220548499 + L2 LINE L2 3150 3263 -9 553 220 91 102 chr3 6976083 6976218 -220548360 - MIR SINE MIR 0 262 130 1629 129 70 22 chr3 6976218 6976489 -220548089 - AluJo SINE Alu -28 284 1 553 220 91 102 chr3 6976489 6976617 -220547961 - MIR SINE MIR -132 130 2 779 178 0 30 chr3 6977690 6977825 -220546753 - FLAM_C SINE Alu -2 131 1 769 231 98 31 chr3 6977855 6978080 -220546498 - MIR SINE MIR -20 242 3 517 225 0 45 chr3 6978130 6978241 -220546337 - L2 LINE L2 0 3313 3208 260 238 0 165 chr3 6978146 6978310 -220546268 - MIR SINE MIR -10 252 116 * 474 300 0 0 chr3 6978375 6978485 -220546093 - L2 LINE L2 -10 3262 3153 823 164 7 26 chr3 6978749 6978901 -220545677 + AluJb SINE Alu 140 288 -24 306 291 74 3 chr3 6978920 6979035 -220545543 + MIR3 SINE MIR 75 194 -54 384 152 15 0 chr3 6979261 6979327 -220545251 + L1MEc LINE L1 37 103 -6293 * 414 265 8 17 chr3 6979326 6979443 -220545135 + L1MEc LINE L1 706 821 -5575 644 203 0 31 chr3 6979457 6979585 -220544993 + L2 LINE L2 3190 3313 0 644 221 177 6 chr3 6980258 6980439 -220544139 + MIR SINE MIR 14 225 -37 391 290 60 0 chr3 6980507 6980607 -220543971 + MIR SINE MIR 39 144 -64 368 270 34 0 chr3 6980610 6980699 -220543879 + L2 LINE L2 3195 3286 -27 886 172 5 106 chr3 6980710 6980787 -220543791 - MER45A DNA AcHobo -1403 178 95 2356 85 3 0 chr3 6980787 6981093 -220543485 + AluSg SINE Alu 1 307 -3 886 172 5 106 chr3 6981093 6981107 -220543471 - MER45A DNA AcHobo -1486 95 81 2162 106 7 3 chr3 6981107 6981410 -220543168 + AluSp SINE Alu 1 304 -9 886 172 5 106 chr3 6981410 6981515 -220543063 - MER45A DNA AcHobo -1500 81 1 300 289 26 26 chr3 6981515 6981629 -220542949 + MIR SINE MIR 149 262 0 204 225 99 84 chr3 6981627 6981698 -220542880 - MIR SINE MIR -66 196 125 * 916 98 0 0 chr3 6981714 6981837 -220542741 + FLAM_C SINE Alu 1 123 -20 361 281 114 23 chr3 6982299 6982556 -220542022 + L2 LINE L2 2774 3052 -261 879 134 0 0 chr3 6982557 6982684 -220541894 + FLAM_C SINE Alu 1 127 -16 226 358 0 0 chr3 6982887 6982954 -220541624 + L2 LINE L2 3204 3270 -2 220 311 68 0 chr3 6982963 6983037 -220541541 + MIR SINE MIR 75 153 -55 2110 107 0 0 chr3 6983049 6983338 -220541240 - AluSx SINE Alu -6 306 18 240 209 0 0 chr3 6983391 6983434 -220541144 - L2 LINE L2 -19 3294 3252 2017 144 0 0 chr3 6983659 6983971 -220540607 + AluJb SINE Alu 1 312 0 782 154 0 29 chr3 6984535 6984671 -220539907 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 6984749 6985056 -220539522 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 6985061 6985083 -220539495 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 6985193 6985481 -220539097 + AluSx SINE Alu 1 296 -16 1962 144 100 19 chr3 6985750 6986111 -220538467 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 6986203 6986322 -220538256 + L2 LINE L2 3173 3294 -19 1971 98 41 10 chr3 6986413 6986708 -220537870 - AluSg SINE Alu -6 304 1 384 234 36 7 chr3 6986787 6986924 -220537654 + L1MC4 LINE L1 7902 8042 0 1213 149 160 62 chr3 6986932 6987207 -220537371 - AluJo SINE Alu 0 302 1 605 249 60 55 chr3 6987446 6987647 -220536931 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6987687 6987734 -220536844 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 328 261 153 51 chr3 6988116 6988273 -220536305 - MER5A DNA MER1_type 0 189 17 1606 159 10 20 chr3 6988621 6988916 -220535662 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6988960 6989058 -220535520 + (TG)n Simple_repeat Simple_repeat 2 97 0 441 294 31 25 chr3 6989206 6989366 -220535212 - MIR SINE MIR -1 261 101 263 246 65 58 chr3 6989469 6989607 -220534971 - L2 LINE L2 -4 3309 3171 1475 186 17 7 chr3 6989612 6989913 -220534665 + AluJo SINE Alu 1 304 -8 224 292 258 0 chr3 6990021 6990110 -220534468 + L2 LINE L2 3201 3312 -1 422 200 51 131 chr3 6990351 6990526 -220534052 + MER103 DNA DNA 3 163 -3 512 257 138 0 chr3 6990570 6990722 -220533856 - MER96 DNA MER1_type 0 175 3 1960 150 0 10 chr3 6991066 6991380 -220533198 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6991429 6991488 -220533090 + L2 LINE L2 3246 3313 0 2006 101 4 0 chr3 6991843 6992120 -220532458 - AluSx SINE Alu -2 310 33 1537 46 10 15 chr3 6992165 6992362 -220532216 - MER107 DNA MER1_type 0 197 2 2250 84 0 0 chr3 6992440 6992736 -220531842 - AluSx SINE Alu -16 296 1 743 324 107 9 chr3 6994235 6994675 -220529903 + L2 LINE L2 2797 3287 -26 1540 202 56 11 chr3 6994675 6995032 -220529546 + MLT1A2 LTR MaLR 1 373 -1 743 324 107 9 chr3 6995032 6995060 -220529518 + L2 LINE L2 3287 3311 -2 279 116 23 0 chr3 6995455 6995498 -220529080 - MER4E LTR ERV1 -96 670 627 2240 89 0 3 chr3 6995515 6995819 -220528759 - L1PB1 LINE L1 -1 6150 5848 483 281 31 10 chr3 6996147 6996314 -220528264 - MIR SINE MIR -2 260 91 2198 113 0 0 chr3 6996326 6996628 -220527950 + AluSx SINE Alu 1 302 -10 224 207 17 52 chr3 6996904 6996962 -220527616 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6997888 6998018 -220526560 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6998165 6998204 -220526374 + (TG)n Simple_repeat Simple_repeat 1 39 0 505 307 83 17 chr3 6998430 6998730 -220525848 + L1MCc LINE L1 81 400 -6023 1564 248 63 99 chr3 6999051 7000070 -220524508 + L1MCc LINE L1 1114 2167 -4774 2292 86 0 3 chr3 7000070 7000374 -220524204 + AluSg SINE Alu 1 303 -7 1564 248 63 99 chr3 7000374 7000551 -220524027 + L1MCc LINE L1 2167 2349 -4592 2114 118 7 0 chr3 7000551 7000856 -220523722 + AluSx SINE Alu 1 307 -5 2319 99 0 0 chr3 7000856 7001169 -220523409 + AluSp SINE Alu 1 313 0 1564 248 63 99 chr3 7001169 7001463 -220523115 + L1MCc LINE L1 2348 2651 -4290 839 257 5 0 chr3 7001463 7001650 -220522928 + MER5A DNA MER1_type 2 189 0 1564 248 63 99 chr3 7001650 7001735 -220522843 + L1MCc LINE L1 2651 2737 -4204 1816 163 0 3 chr3 7001735 7002048 -220522530 + AluSx SINE Alu 1 312 0 827 159 0 0 chr3 7002058 7002184 -220522394 + FLAM_C SINE Alu 1 126 -7 1564 248 63 99 chr3 7002184 7002418 -220522160 + L1MCc LINE L1 2746 2987 -3954 1572 157 82 0 chr3 7002418 7002698 -220521880 + AluJo SINE Alu 1 303 -9 1564 248 63 99 chr3 7002698 7002917 -220521661 + L1MCc LINE L1 2987 3257 -3684 2221 107 3 0 chr3 7002917 7003225 -220521353 + AluSp SINE Alu 1 309 -4 1564 248 63 99 chr3 7003225 7003265 -220521313 + L1MCc LINE L1 3257 3297 -3644 577 205 9 18 chr3 7003278 7003390 -220521188 + FLAM_C SINE Alu 3 113 -30 185 0 40 0 chr3 7005222 7005247 -220519331 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 7005246 7005279 -220519299 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 234 9 72 chr3 7006575 7006686 -220517892 + L1ME LINE L1 5725 5828 -293 318 167 0 0 chr3 7007891 7007951 -220516627 + (TG)n Simple_repeat Simple_repeat 2 61 0 33 0 0 0 chr3 7008972 7009005 -220515573 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 7009827 7009853 -220514725 + AT_rich Low_complexity Low_complexity 1 26 0 390 229 0 0 chr3 7011419 7011502 -220513076 - MIR SINE MIR -101 161 79 791 261 81 5 chr3 7011664 7011886 -220512692 - MIR SINE MIR -22 240 2 208 304 128 16 chr3 7011929 7012054 -220512524 - MIR SINE MIR 0 262 124 363 284 0 0 chr3 7012066 7012147 -220512431 - MIR SINE MIR -63 145 65 316 301 62 9 chr3 7012200 7012313 -220512265 - MIR SINE MIR -54 208 90 2034 109 10 0 chr3 7012503 7012796 -220511782 + AluJb SINE Alu 1 296 -16 183 80 0 0 chr3 7012911 7012936 -220511642 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr3 7014062 7014091 -220510487 + AT_rich Low_complexity Low_complexity 1 29 0 4073 175 32 28 chr3 7014119 7014965 -220509613 + L1MB5 LINE L1 5314 6166 -8 987 148 37 70 chr3 7014977 7015221 -220509357 - L1MC5 LINE L1 -68 7893 7658 2229 87 7 0 chr3 7015313 7015612 -220508966 + AluSg SINE Alu 1 301 -9 1607 171 32 4 chr3 7015730 7016010 -220508568 + AluJo SINE Alu 1 288 -24 1054 291 74 3 chr3 7016075 7016412 -220508166 - L1MC4a LINE L1 -1865 5943 5583 291 242 55 11 chr3 7016459 7016550 -220508028 + L1MC4a LINE L1 5560 5654 -467 33 0 0 0 chr3 7016555 7016588 -220507990 + AT_rich Low_complexity Low_complexity 1 33 0 750 171 0 0 chr3 7016588 7016705 -220507873 - FLAM_C SINE Alu -25 118 2 215 267 0 0 chr3 7016782 7016827 -220507751 + polypurine Low_complexity Low_complexity 4 48 0 306 303 127 42 chr3 7016846 7017011 -220507567 + L1MC4a LINE L1 5755 5933 -1875 458 211 65 16 chr3 7017033 7017156 -220507422 + MIR SINE MIR 110 238 -24 235 223 72 72 chr3 7017204 7017370 -220507208 + L1ME4a LINE L1 5943 6108 -13 228 356 104 0 chr3 7017675 7017790 -220506788 + L2 LINE L2 3146 3272 0 417 245 61 49 chr3 7017803 7017966 -220506612 + MIR SINE MIR 80 244 -18 974 167 88 21 chr3 7017993 7018185 -220506393 + AluJo SINE Alu 87 291 -21 34 24 0 0 chr3 7018186 7018227 -220506351 + AT_rich Low_complexity Low_complexity 1 41 0 291 114 0 0 chr3 7018337 7018381 -220506197 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 237 0 0 chr3 7018433 7018471 -220506107 - L2 LINE L2 -34 3279 3242 462 236 24 8 chr3 7018483 7018606 -220505972 - MIR SINE MIR -115 147 23 339 290 46 100 chr3 7020065 7020324 -220504254 - L2 LINE L2 0 3272 3028 1985 183 41 31 chr3 7020355 7020771 -220503807 + MLT1C LTR MaLR 44 463 -4 228 263 71 30 chr3 7020774 7020873 -220503705 - L2 LINE L2 -345 2969 2867 2486 49 0 16 chr3 7021469 7021776 -220502802 - AluY SINE Alu -9 302 1 229 136 0 169 chr3 7021828 7021887 -220502691 + MLT1K LTR MaLR 201 249 -339 1476 186 13 68 chr3 7022698 7023005 -220501573 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 7023338 7023478 -220501100 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 7023536 7023684 -220500894 - Tigger7 DNA MER2_type -1 2486 2339 344 171 100 0 chr3 7023703 7023773 -220500805 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 7023970 7024113 -220500465 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 7024431 7024720 -220499858 + AluSx SINE Alu 1 301 -11 2196 107 0 7 chr3 7024731 7025020 -220499558 + AluSc SINE Alu 1 287 -22 281 241 143 53 chr3 7025029 7025162 -220499416 + L3 LINE CR1 1206 1350 -227 356 264 38 9 chr3 7025167 7025273 -220499305 + LTR16A1 LTR ERVL 11 119 -338 234 0 0 0 chr3 7025473 7025499 -220499079 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2116 127 23 10 chr3 7027430 7027738 -220496840 + AluSx SINE Alu 1 312 0 33 25 0 0 chr3 7027738 7027778 -220496800 + AT_rich Low_complexity Low_complexity 1 40 0 3793 55 13 0 chr3 7028697 7029173 -220495405 - L1PA6 LINE L1 -199 5955 5474 * 6587 54 22 2 chr3 7029172 7030041 -220494537 + L1P LINE L1 3694 4579 -1567 216 214 41 31 chr3 7030181 7030279 -220494299 + (CAAA)n Simple_repeat Simple_repeat 3 101 0 404 263 17 31 chr3 7030286 7030515 -220494063 + GA-rich Low_complexity Low_complexity 1 225 0 297 244 29 52 chr3 7030648 7030820 -220493758 + CT-rich Low_complexity Low_complexity 5 172 0 274 125 31 42 chr3 7030820 7030916 -220493662 + T-rich Low_complexity Low_complexity 2 96 0 532 215 15 8 chr3 7030993 7031123 -220493455 - AluSq/x SINE Alu -180 133 3 644 233 43 0 chr3 7031125 7031288 -220493290 - MIR SINE MIR -32 230 61 1913 162 0 9 chr3 7031293 7031608 -220492970 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 7031733 7031755 -220492823 + AT_rich Low_complexity Low_complexity 1 22 0 1552 199 28 0 chr3 7031786 7032068 -220492510 + MER63B DNA MER1_type 1 290 -146 902 81 16 0 chr3 7032079 7032202 -220492376 - FLAM_C SINE Alu -18 125 1 2313 116 0 0 chr3 7032205 7032533 -220492045 - AluSx SINE Alu 0 328 1 2074 147 0 3 chr3 7032535 7032847 -220491731 - AluSq SINE Alu -2 311 1 10220 39 27 94 chr3 7032887 7034370 -220490208 - SVA Other Other -3 1383 1 414 246 0 51 chr3 7034508 7034626 -220489952 + FLAM_A SINE Alu 27 138 -4 2274 109 0 0 chr3 7034629 7034922 -220489656 + AluSg SINE Alu 3 295 -15 1189 185 0 4 chr3 7034937 7035164 -220489414 + AluJo SINE Alu 87 312 0 1928 209 30 26 chr3 7035185 7035615 -220488963 - MLT1C LTR MaLR 0 467 36 585 144 40 0 chr3 7035619 7035744 -220488834 + CT-rich Low_complexity Low_complexity 1 130 0 2449 102 12 86 chr3 7035926 7036036 -220488542 - MER4A LTR ERV1 -172 492 375 2053 128 3 13 chr3 7036036 7036342 -220488236 - AluSx SINE Alu -9 303 1 2449 102 12 86 chr3 7036342 7036803 -220487775 - MER4A LTR ERV1 -289 375 1 2078 121 28 0 chr3 7037934 7038223 -220486355 - AluSx SINE Alu -13 299 3 271 268 97 48 chr3 7038351 7038620 -220485958 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 7038861 7038892 -220485686 + AT_rich Low_complexity Low_complexity 1 31 0 1135 138 29 0 chr3 7038892 7039066 -220485512 - AluJb SINE Alu -13 299 121 1492 181 42 21 chr3 7039156 7039443 -220485135 - AluJo SINE Alu -19 293 1 262 180 67 90 chr3 7041612 7041701 -220482877 - L1MC5 LINE L1 -44 7917 7831 1694 189 7 3 chr3 7041723 7042025 -220482553 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 7042220 7042255 -220482323 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 7042331 7042354 -220482224 + AT_rich Low_complexity Low_complexity 1 23 0 1796 158 0 55 chr3 7042355 7042685 -220481893 - AluJb SINE Alu 0 312 1 225 296 25 12 chr3 7042707 7042788 -220481790 - L1ME4a LINE L1 -463 5658 5577 1647 214 81 29 chr3 7043392 7043924 -220480654 - MLT1F1 LTR MaLR 0 567 2 2366 97 0 0 chr3 7044200 7044499 -220480079 - AluSg SINE Alu -11 299 1 2128 123 0 3 chr3 7045492 7045801 -220478777 - AluSx SINE Alu -4 308 1 1650 235 92 74 chr3 7048297 7049090 -220475488 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 7049287 7049522 -220475056 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 7049624 7049919 -220474659 - AluSx SINE Alu -18 294 2 1283 182 42 42 chr3 7050158 7050220 -220474358 + L1PA16 LINE L1 5875 5936 -230 2180 124 3 0 chr3 7050220 7050519 -220474059 + AluSx SINE Alu 1 300 -12 1283 182 42 42 chr3 7050519 7050742 -220473836 + L1PA16 LINE L1 5935 6160 -6 196 282 0 0 chr3 7051785 7051824 -220472754 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 7052306 7052591 -220471987 + AluJo SINE Alu 6 289 -23 2503 90 3 0 chr3 7053873 7054184 -220470394 - AluSp SINE Alu 0 313 2 1200 147 11 11 chr3 7054184 7054367 -220470211 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 7054368 7054415 -220470163 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 7054419 7054523 -220470055 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 7054873 7055105 -220469473 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 7055163 7055223 -220469355 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 7055223 7055533 -220469045 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 7055533 7055745 -220468833 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 7056296 7056464 -220468114 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 7056600 7056785 -220467793 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 7056790 7057113 -220467465 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 7057116 7057303 -220467275 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 7057303 7057596 -220466982 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 7057596 7058471 -220466107 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 7058471 7058770 -220465808 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 7058772 7058947 -220465631 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 7058952 7059168 -220465410 + AluSg/x SINE Alu 82 296 -16 2091 203 95 97 chr3 7059197 7059929 -220464649 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 7059929 7060291 -220464287 - THE1B LTR MaLR -1 363 1 2091 203 95 97 chr3 7060291 7060725 -220463853 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 7060725 7060993 -220463585 + AluJo SINE Alu 6 273 -39 2091 203 95 97 chr3 7060993 7061498 -220463080 + L1MDa LINE L1 2634 3139 -3401 1170 206 65 43 chr3 7061498 7061775 -220462803 + AluJb SINE Alu 3 285 -17 2091 203 95 97 chr3 7061775 7062057 -220462521 + L1MDa LINE L1 3139 3420 -3120 1060 158 0 0 chr3 7062058 7062210 -220462368 - FRAM SINE Alu -25 151 1 1356 217 114 46 chr3 7062210 7062697 -220461881 + L1MDa LINE L1 3407 3859 -2681 2171 113 0 0 chr3 7062697 7063005 -220461573 - AluSx SINE Alu 0 308 1 2230 106 0 0 chr3 7063011 7063325 -220461253 - AluSx SINE Alu 0 314 1 1356 217 114 46 chr3 7063325 7063440 -220461138 + L1MDa LINE L1 3863 4060 -2480 564 311 11 11 chr3 7064693 7064876 -220459702 + HERVI LTR ERV1 788 970 -6815 2481 303 51 36 chr3 7065102 7066064 -220458514 + HERVI LTR ERV1 954 1900 -5885 3215 55 43 5 chr3 7066064 7066485 -220458093 + L1PA5 LINE L1 5717 6153 -1 2481 303 51 36 chr3 7066485 7068223 -220456355 + HERVI LTR ERV1 1900 4112 -3673 2729 325 35 31 chr3 7068305 7069931 -220454647 + HERVI LTR ERV1 4124 5756 -2029 2141 301 41 45 chr3 7070823 7072051 -220452527 + HERVI LTR ERV1 6425 7647 -138 2287 136 5 35 chr3 7072958 7073333 -220451245 - THE1B LTR MaLR 0 364 1 682 83 0 0 chr3 7073429 7073525 -220451053 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7074414 7074440 -220450138 + AT_rich Low_complexity Low_complexity 1 26 0 251 202 160 75 chr3 7075008 7075102 -220449476 - MIR SINE MIR -62 146 45 792 160 23 0 chr3 7075621 7075752 -220448826 + AluJo SINE Alu 2 135 -177 2286 115 3 10 chr3 7075770 7076084 -220448494 + AluSx SINE Alu 1 312 0 249 321 274 0 chr3 7076263 7076453 -220448125 - MIR SINE MIR -20 242 1 570 144 11 0 chr3 7077298 7077388 -220447190 + AluSc SINE Alu 194 284 -25 210 37 0 0 chr3 7077393 7077420 -220447158 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2089 112 0 3 chr3 7077420 7077751 -220446827 + AluSx SINE Alu 1 330 0 2279 101 0 0 chr3 7077751 7078038 -220446540 + AluSg SINE Alu 1 287 -23 812 170 69 6 chr3 7078063 7078222 -220446356 + AluSg/x SINE Alu 134 302 -7 2006 139 0 3 chr3 7078359 7078653 -220445925 + AluSx SINE Alu 1 293 -19 1422 164 21 52 chr3 7079573 7079860 -220444718 - AluJb SINE Alu -30 282 5 233 324 184 7 chr3 7080105 7080241 -220444337 + L2 LINE L2 2599 2758 -556 289 366 0 18 chr3 7080387 7080499 -220444079 + L2 LINE L2 3126 3235 -37 189 0 0 0 chr3 7080797 7080818 -220443760 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 246 256 61 12 chr3 7080819 7080901 -220443677 - L2 LINE L2 -18 3295 3210 2035 83 65 7 chr3 7080969 7081246 -220443332 + AluSx SINE Alu 1 293 -19 1604 181 13 32 chr3 7081323 7081632 -220442946 + AluJo SINE Alu 6 308 -4 2467 81 0 0 chr3 7081817 7082113 -220442465 + AluSx SINE Alu 1 296 -16 1865 106 124 4 chr3 7082303 7082578 -220442000 + AluSg SINE Alu 1 308 -2 1712 135 67 28 chr3 7082691 7082973 -220441605 + AluSx SINE Alu 1 293 -19 765 154 0 8 chr3 7083183 7083313 -220441265 + AluJ SINE Alu 1 129 -173 2165 125 0 3 chr3 7083344 7083639 -220440939 + AluSx SINE Alu 1 294 -18 710 175 0 8 chr3 7083652 7083772 -220440806 - FLAM_C SINE Alu -23 120 2 926 184 0 36 chr3 7083790 7083958 -220440620 + AluJ SINE Alu 129 290 -22 1242 130 0 0 chr3 7084166 7084343 -220440235 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7084360 7084602 -220439976 + L1ME4a LINE L1 5538 5835 -286 272 293 113 7 chr3 7084684 7084834 -220439744 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7084840 7084864 -220439714 + AT_rich Low_complexity Low_complexity 1 24 0 2021 94 91 0 chr3 7085325 7085601 -220438977 - AluSg SINE Alu -9 301 1 2344 97 3 0 chr3 7085607 7085917 -220438661 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 7086176 7086197 -220438381 + AT_rich Low_complexity Low_complexity 1 21 0 1805 157 7 20 chr3 7087124 7087424 -220437154 + AluSx SINE Alu 1 296 -16 329 296 53 59 chr3 7088123 7088292 -220436286 + MER5A DNA MER1_type 22 189 0 1802 150 10 20 chr3 7088602 7088735 -220435843 + AluJo SINE Alu 1 134 -178 2209 94 0 70 chr3 7088735 7089066 -220435512 + AluSg SINE Alu 1 308 -2 1802 150 10 20 chr3 7089066 7089225 -220435353 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7090027 7090049 -220434529 + AT_rich Low_complexity Low_complexity 1 22 0 389 193 23 23 chr3 7090161 7090249 -220434329 + L2 LINE L2 3221 3308 -5 1869 137 53 0 chr3 7090328 7090612 -220433966 + AluJb SINE Alu 1 299 -13 1321 104 0 0 chr3 7090702 7090875 -220433703 + AluSp SINE Alu 132 304 -9 2055 121 0 7 chr3 7091829 7092110 -220432468 + AluSg SINE Alu 1 279 -31 1133 148 9 70 chr3 7092402 7092631 -220431947 + AluJo SINE Alu 1 215 -97 283 151 19 0 chr3 7092633 7092686 -220431892 + AluJo SINE Alu 83 136 -166 1615 111 4 25 chr3 7092708 7092952 -220431626 + AluSq SINE Alu 68 306 -7 203 303 121 0 chr3 7093681 7093780 -220430798 - L2 LINE L2 -1 3271 3161 1308 158 63 60 chr3 7094196 7094481 -220430097 + AluJo SINE Alu 23 308 -4 678 159 0 90 chr3 7094960 7094994 -220429584 - MER94 DNA DNA -1 133 98 2216 110 3 13 chr3 7094994 7095293 -220429285 - AluSx SINE Alu -16 296 1 678 159 0 90 chr3 7095293 7095403 -220429175 - MER94 DNA DNA -36 98 2 2196 157 60 35 chr3 7095442 7095894 -220428684 + MLT1C LTR MaLR 5 467 0 2341 107 22 19 chr3 7096017 7096383 -220428195 - L1PA16 LINE L1 0 6166 5800 2192 118 10 0 chr3 7096384 7096680 -220427898 - AluSq SINE Alu -14 299 1 2255 129 0 0 chr3 7097253 7097564 -220427014 + AluSx SINE Alu 1 311 -1 2108 135 0 3 chr3 7097753 7098057 -220426521 + AluSq SINE Alu 1 303 -10 2177 119 14 0 chr3 7098061 7098355 -220426223 + AluSx SINE Alu 1 298 -14 1910 127 3 67 chr3 7098940 7099255 -220425323 + AluSp SINE Alu 1 295 -18 2108 130 13 0 chr3 7099310 7099609 -220424969 + AluSg SINE Alu 1 303 -7 2513 135 46 14 chr3 7100102 7100502 -220424076 - MER65A LTR ERV1 0 445 29 2024 126 0 0 chr3 7100502 7100773 -220423805 - AluSx SINE Alu -41 271 1 2513 135 46 14 chr3 7100773 7100803 -220423775 - MER65A LTR ERV1 -416 29 1 766 170 7 22 chr3 7100838 7100973 -220423605 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7101051 7101117 -220423461 + GA-rich Low_complexity Low_complexity 4 67 0 342 263 32 0 chr3 7101127 7101222 -220423356 + MER97c DNA MER1_type? 27 124 -966 222 118 0 0 chr3 7101249 7101283 -220423295 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 222 279 9 63 chr3 7101492 7101603 -220422975 + GA-rich Low_complexity Low_complexity 4 108 0 433 69 0 0 chr3 7101735 7101793 -220422785 - L1P LINE L1 -2392 3754 3697 5738 41 0 3 chr3 7101795 7102477 -220422101 + L1PA5 LINE L1 5474 6153 -1 306 219 41 0 chr3 7102784 7102857 -220421721 + MER63 DNA MER1_type 7 708 -128 346 143 0 0 chr3 7102876 7102932 -220421646 + MER63 DNA MER1_type 970 1025 -36 299 258 31 69 chr3 7103016 7103175 -220421403 - MIR SINE MIR -1 261 109 4120 84 14 9 chr3 7103217 7103788 -220420790 - L1PA10 LINE L1 -3 6165 5592 1397 235 102 40 chr3 7104242 7104314 -220420264 - LTR16A1 LTR ERVL 0 457 391 1998 163 10 61 chr3 7104314 7104725 -220419853 - MLT1B LTR MaLR 0 390 1 1397 235 102 40 chr3 7104725 7105082 -220419496 - LTR16A1 LTR ERVL -66 391 1 338 289 44 0 chr3 7105321 7105411 -220419167 + L2 LINE L2 3162 3255 -17 511 272 0 0 chr3 7105444 7105558 -220419020 - MER81 DNA DNA 0 114 1 1882 172 0 10 chr3 7105660 7105974 -220418604 + AluSx SINE Alu 1 311 -1 250 293 211 48 chr3 7106500 7106647 -220417931 - MLT1K LTR MaLR -68 520 350 477 0 0 0 chr3 7106920 7106973 -220417605 + (TG)n Simple_repeat Simple_repeat 2 54 0 271 211 67 96 chr3 7107218 7107405 -220417173 + LOR1a LTR ERV1 310 603 0 1281 264 124 30 chr3 7108196 7108722 -220415856 - MLT1L LTR MaLR 0 615 41 1203 206 258 76 chr3 7108922 7109423 -220415155 + MLT1G1 LTR MaLR 3 594 -1 412 291 15 65 chr3 7109732 7109931 -220414647 + MLT1I LTR MaLR 80 268 -141 678 167 25 0 chr3 7109973 7110093 -220414485 - FAM SINE Alu -9 40 1 1226 213 30 4 chr3 7110097 7110459 -220414119 + MER74A LTR ERVL 14 468 -90 381 298 35 0 chr3 7110547 7110661 -220413917 + MLT1I LTR MaLR 288 405 -4 295 345 67 8 chr3 7110693 7110812 -220413766 + MLT1K LTR MaLR 62 187 -401 1297 258 73 35 chr3 7110815 7111164 -220413414 + L2 LINE L2 2526 2860 -453 1558 188 27 48 chr3 7111164 7111537 -220413041 - MLT1A1 LTR MaLR 0 365 1 1297 258 73 35 chr3 7111537 7111936 -220412642 + L2 LINE L2 2860 3311 -2 245 323 0 0 chr3 7111952 7112014 -220412564 + MLT1K LTR MaLR 180 241 -347 257 265 47 82 chr3 7112307 7112477 -220412101 + MLT1J2 LTR MaLR 287 450 0 626 246 82 75 chr3 7112481 7112762 -220411816 + MLT1K LTR MaLR 304 586 -2 270 279 130 0 chr3 7113308 7113469 -220411109 + MIR SINE MIR 81 262 0 255 310 58 35 chr3 7113575 7113662 -220410916 - L2 LINE L2 -43 3270 3182 233 357 9 0 chr3 7114960 7115072 -220409506 + MIR SINE MIR 140 252 -10 624 266 89 10 chr3 7115087 7115290 -220409288 - MIR SINE MIR -5 257 39 842 318 130 16 chr3 7115588 7116079 -220408499 + L3 LINE CR1 843 1389 -188 188 354 36 16 chr3 7116157 7116349 -220408229 + L2 LINE L2 2779 2974 -340 2355 93 3 0 chr3 7116415 7116706 -220407872 + AluSx SINE Alu 1 292 -20 180 125 0 0 chr3 7116835 7116867 -220407711 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 233 155 19 chr3 7116867 7116970 -220407608 + L2 LINE L2 3196 3312 -1 861 256 106 57 chr3 7118031 7118420 -220406158 + LTR33A LTR ERVL 2 421 -102 1954 146 3 0 chr3 7118420 7118714 -220405864 - AluSx SINE Alu -17 295 1 861 256 106 57 chr3 7118714 7118816 -220405762 + LTR33A LTR ERVL 421 517 -6 678 264 73 67 chr3 7119095 7119191 -220405387 + L2 LINE L2 2621 2715 -599 1496 190 48 7 chr3 7119191 7119481 -220405097 + AluJo SINE Alu 1 302 -10 678 264 73 67 chr3 7119481 7119728 -220404850 + L2 LINE L2 2715 2966 -348 239 197 211 14 chr3 7119926 7119997 -220404581 + L2 LINE L2 3227 3311 -2 210 313 0 0 chr3 7120001 7120068 -220404510 - MIR SINE MIR -115 147 81 2108 115 7 23 chr3 7121127 7121432 -220403146 + AluSx SINE Alu 3 302 -10 467 273 60 105 chr3 7121560 7121912 -220402666 - MLT1I LTR MaLR 0 409 74 773 292 33 17 chr3 7122000 7122240 -220402338 + MIR SINE MIR 18 261 -1 201 304 14 87 chr3 7122330 7122399 -220402179 + L2 LINE L2 3200 3263 -9 1606 190 16 29 chr3 7122523 7122839 -220401739 - AluJb SINE Alu 0 312 1 288 263 79 94 chr3 7123086 7123136 -220401442 - MIR SINE MIR 0 262 213 953 92 0 241 chr3 7123136 7123201 -220401377 - MER5A DNA MER1_type 0 189 110 2171 120 0 3 chr3 7123201 7123500 -220401078 + AluSx SINE Alu 1 298 -14 348 24 0 0 chr3 7123505 7123546 -220401032 + (CA)n Simple_repeat Simple_repeat 2 42 0 953 92 0 241 chr3 7123546 7123723 -220400855 - MER5A DNA MER1_type -83 106 1 288 263 79 94 chr3 7123723 7123938 -220400640 - MIR SINE MIR -49 213 1 309 289 86 16 chr3 7124735 7124863 -220399715 + L3 LINE CR1 1134 1270 -307 389 313 0 0 chr3 7125366 7125465 -220399113 - MIR SINE MIR -76 132 34 289 0 148 0 chr3 7125474 7125535 -220399043 + T-rich Low_complexity Low_complexity 6 75 0 419 257 13 72 chr3 7125631 7125783 -220398795 - MIR SINE MIR -43 219 77 2092 158 29 8 chr3 7126560 7126940 -220397638 - MLT1B LTR MaLR 0 390 3 377 245 133 10 chr3 7126948 7127046 -220397532 - L2 LINE L2 -16 3297 3188 393 308 60 8 chr3 7127436 7127569 -220397009 + MIR3 SINE MIR 21 160 -48 234 261 45 81 chr3 7128400 7128511 -220396067 - L2 LINE L2 -8 3305 3199 2093 141 3 0 chr3 7128522 7128819 -220395759 + AluJb SINE Alu 1 298 -14 3127 186 25 21 chr3 7129183 7129743 -220394835 + MER68 LTR ERV1 1 562 0 840 133 7 53 chr3 7129922 7130073 -220394505 - MLT1B LTR MaLR -8 382 239 1984 154 52 12 chr3 7130120 7130450 -220394128 + MER61A LTR ERV1 1 343 0 281 80 0 60 chr3 7132477 7132527 -220392051 + Alu SINE Alu 1 47 -255 973 141 19 0 chr3 7132527 7132683 -220391895 + AluSg/x SINE Alu 141 299 -11 361 298 92 26 chr3 7132718 7132946 -220391632 + MIR SINE MIR 14 256 -6 458 273 0 0 chr3 7133079 7133189 -220391389 - MER94 DNA DNA 0 134 25 266 321 171 0 chr3 7133574 7133714 -220390864 - MER117 DNA MER1_type -15 182 19 1046 251 58 69 chr3 7134013 7134589 -220389989 + L2 LINE L2 2760 3306 -7 21 36 0 0 chr3 7135817 7135845 -220388733 + AT_rich Low_complexity Low_complexity 1 28 0 1794 101 8 0 chr3 7135860 7136108 -220388470 - AluSq SINE Alu -63 250 1 191 362 133 0 chr3 7136233 7136338 -220388240 - L2 LINE L2 -1 3312 3194 282 315 11 0 chr3 7136696 7136788 -220387790 - MIR3 SINE MIR -25 183 91 1579 189 28 18 chr3 7137751 7138037 -220386541 - AluJo SINE Alu -23 289 1 692 279 47 63 chr3 7138133 7138434 -220386144 - L2 LINE L2 -13 3300 3005 510 298 12 6 chr3 7138614 7138782 -220385796 - MIR SINE MIR -22 240 72 187 284 74 53 chr3 7138887 7138982 -220385596 + MIR SINE MIR 70 144 -64 402 336 17 0 chr3 7139655 7139834 -220384744 - MIR SINE MIR -44 218 36 332 180 0 0 chr3 7140699 7140760 -220383818 - MLT2B1 LTR ERVL -4 516 456 * 1570 206 81 22 chr3 7140759 7141131 -220383447 - MLT2D LTR ERVL -20 534 1 5495 167 23 13 chr3 7141582 7143045 -220381533 + L1P5 LINE L1 4129 5608 -543 2430 77 0 3 chr3 7143045 7143344 -220381234 + AluY SINE Alu 1 298 -13 5495 167 23 13 chr3 7143344 7143508 -220381070 + L1P5 LINE L1 5608 5769 -382 991 337 33 19 chr3 7143916 7143969 -220380609 + L1M3c LINE L1 959 1010 -6088 198 0 0 0 chr3 7143969 7143991 -220380587 + (CA)n Simple_repeat Simple_repeat 1 22 0 991 337 33 19 chr3 7143991 7144364 -220380214 + L1M3c LINE L1 1010 1391 -5707 225 283 92 33 chr3 7144524 7144644 -220379934 + L1M3c LINE L1 1681 1807 -5361 3270 247 110 22 chr3 7145173 7145629 -220378949 + L1M3c LINE L1 1902 2316 -4851 7800 51 6 10 chr3 7145629 7147170 -220377408 + SVA Other Other 7 1385 -1 3270 247 110 22 chr3 7147170 7148975 -220375603 + L1M3c LINE L1 2316 3990 -3177 1809 162 3 17 chr3 7148975 7149265 -220375313 + AluJb SINE Alu 5 290 -22 3270 247 110 22 chr3 7149265 7149425 -220375153 + L1M3c LINE L1 3990 4134 -3033 1164 197 92 4 chr3 7149425 7149664 -220374914 + AluJo SINE Alu 1 260 -52 449 117 57 0 chr3 7149720 7149803 -220374775 - L1M2 LINE L1 -4352 1683 1346 6194 177 29 7 chr3 7149841 7151065 -220373513 + L1M3c LINE L1 4125 5375 -1792 1793 285 18 7 chr3 7151097 7151616 -220372962 - L1M2 LINE L1 -5251 704 1 227 317 45 22 chr3 7151718 7151942 -220372636 - L1M4 LINE L1 -3065 3081 2853 371 262 0 48 chr3 7152306 7152409 -220372169 + MIR SINE MIR 44 141 -67 282 253 121 96 chr3 7152647 7152845 -220371733 + MIR SINE MIR 19 221 -41 1137 130 6 0 chr3 7153576 7153745 -220370833 + AluSg/x SINE Alu 131 300 -10 1083 256 108 42 chr3 7154261 7154694 -220369884 + MLT1C LTR MaLR 5 466 -1 384 132 40 53 chr3 7154763 7154839 -220369739 - LTR65 LTR ERV1 -256 413 339 381 312 85 0 chr3 7155564 7155705 -220368873 + Charlie8 DNA MER1_type 113 265 -2152 2188 186 9 30 chr3 7155841 7156270 -220368308 - MLT1E2 LTR MaLR 0 626 207 3497 98 11 7 chr3 7156339 7156789 -220367789 - MLT2A2 LTR ERVL 0 453 2 1251 238 19 7 chr3 7156796 7157103 -220367475 + L1ME2 LINE L1 5840 6150 -14 195 42 0 0 chr3 7157130 7157154 -220367424 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1607 192 6 41 chr3 7157207 7157524 -220367054 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 7158153 7158175 -220366403 + AT_rich Low_complexity Low_complexity 1 22 0 293 324 22 7 chr3 7158238 7158374 -220366204 + MIR3 SINE MIR 57 194 -14 1292 212 33 29 chr3 7158459 7158765 -220365813 - MER58B DNA MER1_type 0 341 35 340 290 145 32 chr3 7159011 7159259 -220365319 + MLT1J LTR MaLR 1 276 -273 1533 286 82 8 chr3 7159372 7159848 -220364730 + MLT1E LTR MaLR 3 513 -80 470 216 22 65 chr3 7159896 7160035 -220364543 + MLT1J LTR MaLR 379 511 0 1797 147 3 20 chr3 7160390 7160683 -220363895 + AluSx SINE Alu 13 300 -12 281 275 57 9 chr3 7162018 7162132 -220362446 + MIR SINE MIR 36 154 -59 721 205 98 48 chr3 7162133 7162453 -220362125 - LTR37B LTR ERV1 0 468 125 796 220 43 0 chr3 7162543 7162757 -220361821 + MER58C DNA MER1_type 12 215 0 321 284 22 37 chr3 7163768 7163902 -220360676 + Charlie8 DNA MER1_type 61 192 -2225 291 215 11 108 chr3 7163918 7163984 -220360594 + MER5A DNA MER1_type 9 65 -124 2132 124 3 10 chr3 7163984 7164290 -220360288 + AluSx SINE Alu 1 304 -8 291 215 11 108 chr3 7164290 7164316 -220360262 + MER5A DNA MER1_type 65 92 -97 185 302 0 0 chr3 7164694 7164737 -220359841 + L2 LINE L2 3218 3260 -12 266 234 13 78 chr3 7164810 7164887 -220359691 + L2 LINE L2 3175 3246 -26 181 325 149 9 chr3 7164970 7165084 -220359494 - L2 LINE L2 -14 3299 3170 261 161 77 51 chr3 7165155 7165247 -220359331 - MLT1H LTR MaLR -18 572 281 346 192 51 0 chr3 7165311 7165389 -220359189 - MLT1H LTR MaLR -229 320 239 2239 111 16 3 chr3 7165422 7165729 -220358849 + AluSx SINE Alu 1 311 -1 531 288 18 12 chr3 7166066 7166229 -220358349 - MLT1H LTR MaLR -374 175 12 491 274 39 17 chr3 7166401 7166580 -220357998 - MIR SINE MIR -3 259 77 246 250 0 0 chr3 7167479 7167539 -220357039 + A-rich Low_complexity Low_complexity 1 60 0 448 290 33 49 chr3 7167560 7167743 -220356835 + MER117 DNA MER1_type 2 181 -16 1564 164 53 37 chr3 7167884 7168183 -220356395 + AluJo SINE Alu 1 304 -8 1554 196 39 0 chr3 7168204 7168490 -220356088 + AluJo SINE Alu 11 307 -5 233 169 0 84 chr3 7169121 7169192 -220355386 + T-rich Low_complexity Low_complexity 3 67 0 267 114 0 0 chr3 7169194 7169238 -220355340 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1737 153 33 0 chr3 7169238 7169559 -220355019 - AluJb SINE Alu 0 331 1 884 208 133 123 chr3 7169916 7170487 -220354091 - LTR8A LTR ERV1 -150 577 1 1926 115 11 0 chr3 7170603 7170962 -220353616 + AluSg SINE Alu 1 362 0 2118 121 3 0 chr3 7171026 7171324 -220353254 + AluSx SINE Alu 1 299 -13 1589 159 41 14 chr3 7172011 7172301 -220352277 + AluJo SINE Alu 1 298 -14 2260 64 0 3 chr3 7172404 7172713 -220351865 + AluY SINE Alu 1 308 0 1692 174 0 17 chr3 7172717 7173015 -220351563 + AluJb SINE Alu 1 293 -19 1019 114 27 0 chr3 7173230 7173379 -220351199 - AluSg/x SINE Alu -16 294 142 1107 263 58 0 chr3 7173379 7173687 -220350891 - MLT1B LTR MaLR -63 327 2 1014 275 136 21 chr3 7174153 7174528 -220350050 - L2 LINE L2 0 3313 2896 511 267 0 8 chr3 7174543 7174674 -220349904 - AluJb SINE Alu -1 311 182 230 229 0 0 chr3 7174674 7174722 -220349856 + MLT1E1 LTR MaLR 4 51 -603 * 2127 226 66 57 chr3 7174689 7175299 -220349279 + MLT1E2 LTR MaLR 10 624 -2 536 273 50 0 chr3 7175331 7175492 -220349086 - L2 LINE L2 -420 2894 2726 290 318 95 0 chr3 7176830 7176956 -220347622 + MIR SINE MIR 117 254 -8 1832 168 10 0 chr3 7177167 7177477 -220347101 + 7SLRNA srpRNA srpRNA 1 313 -7 418 240 275 43 chr3 7177601 7177859 -220346719 - L2 LINE L2 -4 3309 2992 371 321 37 0 chr3 7178214 7178348 -220346230 - MIR SINE MIR 0 262 124 368 267 91 82 chr3 7178428 7178519 -220346059 + L3 LINE CR1 1115 1204 -373 1964 134 0 0 chr3 7178519 7178809 -220345769 + AluSx SINE Alu 1 290 -22 368 267 91 82 chr3 7178809 7178949 -220345629 + L3 LINE CR1 1204 1348 -229 366 274 35 9 chr3 7178949 7179062 -220345516 + LTR16A1 LTR ERVL 4 119 -338 234 0 0 0 chr3 7179262 7179288 -220345290 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2408 43 7 0 chr3 7180380 7180685 -220343893 - AluY SINE Alu -4 307 1 269 157 0 0 chr3 7180754 7180805 -220343773 - L1MB8 LINE L1 -4 6174 6124 1344 171 144 4 chr3 7180819 7181082 -220343496 - AluSg SINE Alu 0 300 1 22 0 0 0 chr3 7181082 7181104 -220343474 + AT_rich Low_complexity Low_complexity 1 22 0 2252 147 34 0 chr3 7181104 7181457 -220343121 - L1PA16 LINE L1 -9 6157 5793 315 132 38 0 chr3 7181457 7181510 -220343068 - L1MB8 LINE L1 -41 6137 6083 213 39 0 0 chr3 7182034 7182060 -220342518 + (CA)n Simple_repeat Simple_repeat 2 27 0 304 216 88 49 chr3 7182177 7182279 -220342299 + MER5A DNA MER1_type 81 186 -3 238 115 39 0 chr3 7182669 7182721 -220341857 + (CA)n Simple_repeat Simple_repeat 1 54 0 285 191 44 3 chr3 7182812 7182954 -220341624 + MER53 DNA DNA 3 186 -3 1696 128 139 0 chr3 7183162 7183436 -220341142 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 7183442 7183466 -220341112 + AT_rich Low_complexity Low_complexity 1 24 0 200 267 0 0 chr3 7183708 7183753 -220340825 + MER91 DNA MER1_type 1 45 -151 1513 243 132 50 chr3 7184069 7184608 -220339970 + MLT1G LTR MaLR 8 590 0 7209 58 3 3 chr3 7185095 7186583 -220337995 - L1PA7 LINE L1 0 6154 4668 4597 79 10 22 chr3 7186848 7188016 -220336562 + SVA Other Other 1 1386 0 22 70 0 0 chr3 7188403 7188446 -220336132 + AT_rich Low_complexity Low_complexity 1 43 0 657 219 8 0 chr3 7188515 7188634 -220335944 + FLAM_A SINE Alu 1 120 -13 297 282 39 19 chr3 7189173 7189276 -220335302 + MIR3 SINE MIR 54 158 -50 595 247 14 0 chr3 7189380 7189526 -220335052 - MER103 DNA DNA 0 166 19 2231 107 0 0 chr3 7189862 7190161 -220334417 + AluSx SINE Alu 1 299 -13 355 222 25 0 chr3 7190464 7190545 -220334033 + MER117 DNA MER1_type 75 157 -40 992 60 26 27 chr3 7190694 7191207 -220333371 + (TG)n Simple_repeat Simple_repeat 1 512 0 661 228 39 22 chr3 7191835 7192015 -220332563 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7192226 7192465 -220332113 + L2 LINE L2 2734 2977 -337 2401 59 0 3 chr3 7192534 7192838 -220331740 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7192847 7193127 -220331451 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7193130 7193181 -220331397 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7193299 7193752 -220330826 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7193781 7193809 -220330769 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7193809 7193852 -220330726 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7193852 7193969 -220330609 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7194740 7194845 -220329733 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7195218 7195395 -220329183 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7195655 7195954 -220328624 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7195980 7196143 -220328435 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7196143 7196445 -220328133 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7196453 7196639 -220327939 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7196672 7196839 -220327739 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7196839 7197075 -220327503 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7197075 7197352 -220327226 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7197473 7197563 -220327015 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7198133 7198252 -220326326 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7199394 7199459 -220325119 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7199459 7199999 -220324579 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7199999 7200326 -220324252 - MLT1K LTR MaLR -125 463 126 287 204 21 0 chr3 7200545 7200638 -220323940 + (TTCA)n Simple_repeat Simple_repeat 3 97 0 292 225 113 0 chr3 7200670 7200741 -220323837 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7200758 7201174 -220323404 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7201414 7201543 -220323035 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7202063 7202213 -220322365 - MIR SINE MIR -74 188 21 880 175 23 0 chr3 7202667 7202838 -220321740 - FRAM SINE Alu -1 175 1 2009 123 0 3 chr3 7203832 7204141 -220320437 - AluSx SINE Alu -4 308 1 213 189 0 0 chr3 7205068 7205105 -220319473 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 271 7 52 chr3 7205407 7205562 -220319016 + MER103 DNA DNA 19 166 0 292 219 110 24 chr3 7205621 7205703 -220318875 - L2 LINE L2 0 3272 3184 201 171 0 0 chr3 7205725 7205760 -220318818 + A-rich Low_complexity Low_complexity 1 35 0 787 110 17 0 chr3 7205761 7205879 -220318699 + AluSc SINE Alu 164 283 -26 228 222 79 32 chr3 7206217 7206280 -220318298 + MIR3 SINE MIR 129 194 -14 207 0 0 0 chr3 7206339 7206362 -220318216 + (TG)n Simple_repeat Simple_repeat 2 24 0 1931 121 0 0 chr3 7206368 7206649 -220317929 - AluSx SINE Alu -31 281 1 2339 84 0 0 chr3 7208926 7209223 -220315355 + AluSq SINE Alu 1 297 -16 21 0 0 0 chr3 7209885 7209906 -220314672 + AT_rich Low_complexity Low_complexity 1 21 0 1808 147 0 34 chr3 7211291 7211611 -220312967 + AluJo SINE Alu 1 309 -3 1669 86 9 0 chr3 7211700 7211933 -220312645 + L1MA2 LINE L1 6070 6304 0 31 0 0 0 chr3 7211933 7211964 -220312614 + AT_rich Low_complexity Low_complexity 1 31 0 2237 67 3 0 chr3 7212922 7213219 -220311359 + AluY SINE Alu 1 298 -13 27 0 0 0 chr3 7214472 7214499 -220310079 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 7214681 7214704 -220309874 + GC_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr3 7215221 7215257 -220309321 + GC_rich Low_complexity Low_complexity 1 36 0 504 220 197 34 chr3 7217499 7217702 -220306876 + MIR SINE MIR 17 237 -25 1839 134 10 3 chr3 7217747 7218039 -220306539 + AluSx SINE Alu 1 294 -18 231 254 34 0 chr3 7218097 7218156 -220306422 + L1MC/D LINE L1 5443 5503 -2305 387 263 59 0 chr3 7218164 7218282 -220306296 + FAM SINE Alu 35 159 -16 818 188 211 32 chr3 7218363 7218761 -220305817 - LTR54B LTR ERV1 0 510 2 1931 124 14 0 chr3 7218774 7219065 -220305513 + AluSx SINE Alu 2 296 -16 2141 86 41 3 chr3 7219622 7219912 -220304666 + AluY SINE Alu 1 301 -10 371 266 107 35 chr3 7220308 7220477 -220304101 - MIR3 SINE MIR -6 202 22 22 35 0 0 chr3 7223092 7223121 -220301457 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 7224449 7224470 -220300108 + (A)n Simple_repeat Simple_repeat 1 21 0 2344 70 13 0 chr3 7225067 7225365 -220299213 + AluSq SINE Alu 1 302 -11 1152 149 123 0 chr3 7225803 7225998 -220298580 - MER20 DNA MER1_type 0 219 1 2156 125 0 3 chr3 7226289 7226593 -220297985 + AluSx SINE Alu 1 303 -9 1818 192 68 21 chr3 7226822 7227250 -220297328 + MLT1C LTR MaLR 18 465 -2 874 153 127 0 chr3 7227533 7227683 -220296895 - MER6B DNA MER2_type -5 205 37 1920 122 15 0 chr3 7227733 7228004 -220296574 + AluSx SINE Alu 14 288 -24 539 74 98 0 chr3 7228008 7228171 -220296407 + (TA)n Simple_repeat Simple_repeat 2 180 0 238 274 0 0 chr3 7228191 7228242 -220296336 - MER6B DNA MER2_type -224 52 2 1941 58 81 0 chr3 7229075 7229365 -220295213 - AluY SINE Alu 0 312 2 690 120 88 16 chr3 7229386 7229511 -220295067 - MER46A DNA MER2_type 0 236 103 492 307 81 45 chr3 7229562 7229894 -220294684 + L2 LINE L2 2952 3295 -18 2140 95 18 7 chr3 7231179 7231482 -220293096 + AluSq SINE Alu 1 306 0 2009 138 6 6 chr3 7231795 7232107 -220292471 + AluSx SINE Alu 1 312 0 1605 184 41 17 chr3 7233115 7233475 -220291103 + L1MB3 LINE L1 5350 5914 -257 393 39 0 0 chr3 7233475 7233526 -220291052 + (CA)n Simple_repeat Simple_repeat 1 51 0 1605 184 41 17 chr3 7233526 7233581 -220290997 + L1MB3 LINE L1 5914 5966 -205 827 176 42 18 chr3 7233587 7233752 -220290826 + L1MB3 LINE L1 6014 6182 -1 21 71 0 0 chr3 7233837 7233879 -220290699 + AT_rich Low_complexity Low_complexity 1 42 0 191 303 61 15 chr3 7234103 7234169 -220290409 + MIR3 SINE MIR 111 179 -29 1461 186 13 68 chr3 7234453 7234760 -220289818 + AluJb SINE Alu 1 290 -22 516 264 21 7 chr3 7235093 7235233 -220289345 - MIR SINE MIR -48 214 73 1092 101 0 0 chr3 7235291 7235439 -220289139 - Tigger7 DNA MER2_type -1 2486 2339 346 171 100 0 chr3 7235458 7235528 -220289050 - Tigger7 DNA MER2_type -473 77 1 417 264 162 0 chr3 7235720 7235868 -220288710 + MIR3 SINE MIR 33 204 -4 1983 104 45 3 chr3 7236186 7236475 -220288103 + AluSx SINE Alu 1 301 -11 2279 105 0 0 chr3 7236486 7236781 -220287797 + AluSc SINE Alu 1 295 -14 1697 235 92 74 chr3 7237614 7238407 -220286171 + L1MC4 LINE L1 7235 8041 -1 1306 162 43 43 chr3 7238604 7238839 -220285739 - MER8 DNA MER2_type -1 238 4 2216 98 0 7 chr3 7238941 7239236 -220285342 - AluSx SINE Alu -18 294 2 1234 175 45 65 chr3 7239475 7239543 -220285035 + L1PA16 LINE L1 5875 5943 -223 2141 119 3 0 chr3 7239543 7239836 -220284742 + AluSx SINE Alu 7 300 -12 1234 175 45 65 chr3 7239836 7240059 -220284519 + L1PA16 LINE L1 5943 6160 -6 185 306 69 14 chr3 7240949 7241021 -220283557 - L2 LINE L2 -219 3094 3019 210 282 0 0 chr3 7241100 7241139 -220283439 + MIR SINE MIR 37 75 -133 1184 186 53 56 chr3 7241622 7241907 -220282671 + AluJo SINE Alu 6 289 -23 2489 90 3 0 chr3 7243189 7243500 -220281078 - AluSp SINE Alu 0 313 2 1174 152 11 11 chr3 7243500 7243683 -220280895 - AluJb SINE Alu -5 307 122 291 128 0 21 chr3 7243684 7243731 -220280847 + AluSp SINE Alu 117 162 -141 805 96 0 0 chr3 7243735 7243839 -220280739 - AluJb SINE Alu -202 110 7 690 315 17 9 chr3 7244189 7244421 -220280157 + MIR SINE MIR 12 245 -17 284 363 18 33 chr3 7244479 7244539 -220280039 + L1MDa LINE L1 49 108 -6432 1954 132 3 32 chr3 7244539 7244849 -220279729 + AluSx SINE Alu 1 301 -11 284 363 18 33 chr3 7244849 7245061 -220279517 + L1MDa LINE L1 108 317 -6223 244 327 18 30 chr3 7245612 7245780 -220278798 + L1MDa LINE L1 854 1019 -5511 1059 119 0 92 chr3 7245916 7246101 -220278477 + AluSx SINE Alu 1 168 -144 2104 118 3 37 chr3 7246106 7246429 -220278149 + AluSx SINE Alu 1 312 0 4866 156 35 41 chr3 7246432 7246619 -220277959 + L1M4c LINE L1 721 908 -5476 1949 154 0 0 chr3 7246619 7246912 -220277666 + AluSx SINE Alu 1 293 -19 4866 156 35 41 chr3 7246912 7247787 -220276791 + L1M4c LINE L1 908 1776 -4608 1658 127 0 80 chr3 7247787 7248086 -220276492 + AluSx SINE Alu 1 275 -37 859 149 63 11 chr3 7248088 7248263 -220276315 + L1MB3 LINE L1 5949 6132 -51 1384 134 5 9 chr3 7248268 7248484 -220276094 + AluSg/x SINE Alu 82 296 -16 2131 203 95 98 chr3 7248513 7249249 -220275329 + L1MDa LINE L1 1469 2206 -4334 2183 147 28 22 chr3 7249249 7249610 -220274968 - THE1B LTR MaLR -1 363 1 2131 203 95 98 chr3 7249610 7250044 -220274534 + L1MDa LINE L1 2206 2640 -3900 1569 187 4 4 chr3 7250044 7250312 -220274266 + AluJo SINE Alu 6 273 -39 2131 203 95 98 chr3 7250312 7250817 -220273761 + L1MDa LINE L1 2640 3138 -3402 1296 199 65 43 chr3 7250817 7251094 -220273484 + AluJb SINE Alu 3 285 -17 2131 203 95 98 chr3 7251094 7251376 -220273202 + L1MDa LINE L1 3138 3420 -3120 1049 158 0 0 chr3 7251377 7251529 -220273049 - FRAM SINE Alu -25 151 1 1402 222 113 44 chr3 7251529 7252016 -220272562 + L1MDa LINE L1 3407 3859 -2681 2152 113 0 0 chr3 7252016 7252324 -220272254 - AluSx SINE Alu 0 308 1 2208 106 0 0 chr3 7252330 7252644 -220271934 - AluSx SINE Alu 0 314 1 1402 222 113 44 chr3 7252644 7252759 -220271819 + L1MDa LINE L1 3863 4060 -2480 576 340 20 8 chr3 7253944 7254194 -220270384 + HERVI LTR ERV1 718 970 -6815 5324 309 44 45 chr3 7254420 7255381 -220269197 + HERVI LTR ERV1 954 1914 -5871 3370 55 43 5 chr3 7255381 7255802 -220268776 + L1PA5 LINE L1 5717 6153 -1 5324 309 44 45 chr3 7255802 7259248 -220265330 + HERVI LTR ERV1 1914 5756 -2029 2147 300 41 45 chr3 7260140 7261368 -220263210 + HERVI LTR ERV1 6425 7647 -138 2417 136 5 35 chr3 7262276 7262651 -220261927 - THE1B LTR MaLR 0 364 1 720 83 0 0 chr3 7262747 7262843 -220261735 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7263732 7263758 -220260820 + AT_rich Low_complexity Low_complexity 1 26 0 284 202 160 75 chr3 7264326 7264420 -220260158 - MIR SINE MIR -62 146 45 838 160 23 0 chr3 7264942 7265073 -220259505 + AluJo SINE Alu 2 135 -177 2276 115 3 10 chr3 7265091 7265405 -220259173 + AluSx SINE Alu 1 312 0 304 321 274 0 chr3 7265584 7265774 -220258804 - MIR SINE MIR -20 242 1 377 146 0 0 chr3 7266619 7266674 -220257904 + AluSg/x SINE Alu 196 250 -52 887 162 61 92 chr3 7266674 7266714 -220257864 + AluSg/x SINE Alu 83 123 -187 210 37 0 0 chr3 7266714 7266741 -220257837 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2038 109 3 3 chr3 7266741 7267072 -220257506 + AluSx SINE Alu 1 331 0 2258 101 0 0 chr3 7267072 7267359 -220257219 + AluSg SINE Alu 1 287 -23 887 162 61 92 chr3 7267359 7267543 -220257035 + AluSg/x SINE Alu 120 303 -7 1980 139 0 3 chr3 7267680 7267974 -220256604 + AluSx SINE Alu 1 293 -19 1401 164 21 52 chr3 7268894 7269181 -220255397 - AluJb SINE Alu -30 282 5 224 333 216 6 chr3 7269391 7269562 -220255016 + L2 LINE L2 2552 2758 -556 334 328 156 16 chr3 7269708 7269836 -220254742 + L2 LINE L2 3126 3271 -1 189 0 0 0 chr3 7270118 7270139 -220254439 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 274 256 61 12 chr3 7270140 7270222 -220254356 - L2 LINE L2 -18 3295 3210 2013 83 65 7 chr3 7270290 7270567 -220254011 + AluSx SINE Alu 1 293 -19 1581 181 13 32 chr3 7270644 7270953 -220253625 + AluJo SINE Alu 6 308 -4 2333 81 0 0 chr3 7271138 7271434 -220253144 + AluSx SINE Alu 1 296 -16 1754 106 124 4 chr3 7271624 7271899 -220252679 + AluSg SINE Alu 1 308 -2 1599 135 67 28 chr3 7272012 7272294 -220252284 + AluSx SINE Alu 1 293 -19 787 154 0 8 chr3 7272504 7272634 -220251944 + AluJ SINE Alu 1 129 -173 2092 137 0 0 chr3 7272665 7272972 -220251606 + AluSx SINE Alu 1 307 -5 717 175 0 8 chr3 7272972 7273092 -220251486 - AluJo/FLAM SINE Alu -192 120 2 865 184 0 36 chr3 7273110 7273278 -220251300 + AluJ SINE Alu 129 290 -22 1177 130 0 0 chr3 7273486 7273663 -220250915 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7273680 7273922 -220250656 + L1ME4a LINE L1 5538 5835 -286 264 293 113 7 chr3 7274004 7274154 -220250424 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7274160 7274184 -220250394 + AT_rich Low_complexity Low_complexity 1 24 0 1902 94 91 0 chr3 7274645 7274921 -220249657 - AluSg SINE Alu -9 301 1 1937 63 0 0 chr3 7274927 7275166 -220249412 - AluY SINE Alu -1 310 72 22 0 0 0 chr3 7275451 7275473 -220249105 + AT_rich Low_complexity Low_complexity 1 22 0 422 229 83 57 chr3 7275574 7275731 -220248847 + MIR3 SINE MIR 48 208 0 732 144 23 0 chr3 7276801 7276933 -220247645 - L1MA7 LINE L1 -2 6289 6155 2154 105 0 0 chr3 7276996 7277292 -220247286 + AluSx SINE Alu 1 296 -16 587 273 126 25 chr3 7277552 7277790 -220246788 - MIR SINE MIR 0 262 1 1493 158 3 44 chr3 7278068 7278365 -220246213 + AluJo SINE Alu 18 302 -10 865 118 7 29 chr3 7278423 7278559 -220246019 + FLAM_C SINE Alu 1 133 0 1859 118 21 3 chr3 7278661 7278949 -220245629 + AluSx SINE Alu 1 293 -19 268 152 30 0 chr3 7280698 7280764 -220243814 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1274 228 59 62 chr3 7280873 7281182 -220243396 - MER49 LTR ERV1 0 923 614 1993 139 3 3 chr3 7281182 7281492 -220243086 + AluSx SINE Alu 1 310 -2 1274 228 59 62 chr3 7281492 7281586 -220242992 - MER49 LTR ERV1 -309 614 521 1005 86 0 7 chr3 7281588 7281727 -220242851 + AluYb8 SINE Alu 1 138 -180 2218 106 3 0 chr3 7281729 7282040 -220242538 + AluSx SINE Alu 1 312 0 1130 126 32 24 chr3 7282041 7282381 -220242197 - MER49 LTR ERV1 -389 534 160 2451 52 0 3 chr3 7282381 7282691 -220241887 - AluY SINE Alu -2 309 1 251 295 67 0 chr3 7282867 7282972 -220241606 - L1ME4a LINE L1 0 6121 6010 580 343 18 14 chr3 7283030 7283249 -220241329 - MIR SINE MIR -1 261 42 1947 113 15 95 chr3 7283467 7283529 -220241049 + L1PBa LINE L1 1552 1617 -5246 2048 115 0 29 chr3 7283529 7283842 -220240736 + AluSx SINE Alu 1 304 -8 1947 113 15 95 chr3 7283842 7284188 -220240390 + L1PBa LINE L1 1617 1927 -4936 274 171 157 14 chr3 7284339 7284409 -220240169 + L2 LINE L2 3229 3308 -5 827 213 38 85 chr3 7284514 7284622 -220239956 - MIR SINE MIR -10 252 159 1901 117 40 0 chr3 7284622 7284920 -220239658 + AluSx SINE Alu 1 310 -2 827 213 38 85 chr3 7284920 7285046 -220239532 - MIR SINE MIR -103 159 29 592 326 84 45 chr3 7285754 7286273 -220238305 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 7286390 7286417 -220238161 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1958 126 0 3 chr3 7286417 7286702 -220237876 - AluSx SINE Alu -28 284 1 1306 194 0 68 chr3 7286704 7287028 -220237550 - AluJo SINE Alu -10 302 1 359 203 100 144 chr3 7287157 7287428 -220237150 + MLT1K LTR MaLR 330 588 0 288 0 0 0 chr3 7287511 7287543 -220237035 + (A)n Simple_repeat Simple_repeat 1 32 0 891 266 129 6 chr3 7287696 7288030 -220236548 - L3 LINE CR1 -42 1535 1161 242 116 23 0 chr3 7288130 7288173 -220236405 + (CA)n Simple_repeat Simple_repeat 2 45 0 399 293 73 44 chr3 7288232 7288437 -220236141 - MIR SINE MIR -21 241 31 282 297 14 109 chr3 7289108 7289246 -220235332 - MIR SINE MIR -106 156 32 503 259 45 58 chr3 7289289 7289532 -220235046 + L1MD2 LINE L1 5788 6027 -139 1887 137 14 0 chr3 7289532 7289824 -220234754 - AluJo SINE Alu -16 296 1 624 219 14 0 chr3 7289825 7289971 -220234607 + L1MA10 LINE L1 6174 6321 -13 702 75 0 0 chr3 7289997 7290091 -220234487 + L1PA5 LINE L1 6061 6154 0 29 0 0 0 chr3 7290120 7290149 -220234429 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 7290185 7290323 -220234255 + (TA)n Simple_repeat Simple_repeat 1 143 0 254 324 102 25 chr3 7290330 7290561 -220234017 + L2 LINE L2 2791 3037 -276 231 307 86 57 chr3 7290597 7290737 -220233841 + L2 LINE L2 3168 3311 -2 1067 201 0 4 chr3 7290753 7290982 -220233596 - AluSg/x SINE Alu 0 312 85 315 207 0 73 chr3 7290987 7291069 -220233509 - AluSp/q SINE Alu -57 246 171 488 239 33 10 chr3 7291177 7291669 -220232909 + GA-rich Low_complexity Low_complexity 1 503 0 324 294 33 11 chr3 7291673 7291765 -220232813 + polypurine Low_complexity Low_complexity 5 98 0 741 165 8 30 chr3 7291810 7291943 -220232635 - FLAM_C SINE Alu -12 131 2 619 307 99 27 chr3 7292109 7292480 -220232098 + L2 LINE L2 2739 3155 -158 1633 157 31 7 chr3 7292480 7292774 -220231804 - AluJo SINE Alu -6 306 6 619 307 99 27 chr3 7292774 7292858 -220231720 + L2 LINE L2 3155 3232 -81 2213 105 0 0 chr3 7292905 7293200 -220231378 + AluSx SINE Alu 1 295 -17 2140 121 0 6 chr3 7293288 7293602 -220230976 + AluSx SINE Alu 1 312 0 304 205 250 58 chr3 7293633 7293789 -220230789 - L1MC4a LINE L1 -1675 6133 5948 * 319 276 0 61 chr3 7293777 7293875 -220230703 - L1MC4 LINE L1 -1339 6703 6612 2104 81 0 32 chr3 7293929 7294238 -220230340 - AluY SINE Alu -1 310 12 204 268 52 31 chr3 7294350 7294447 -220230131 + MIR SINE MIR 85 183 -79 233 213 82 16 chr3 7294685 7294746 -220229832 - LTR8 LTR ERV1 -389 302 238 180 0 0 0 chr3 7294813 7294833 -220229745 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2070 100 0 0 chr3 7294835 7295114 -220229464 - AluY SINE Alu -32 279 1 1831 131 52 3 chr3 7295564 7295854 -220228724 - AluSx SINE Alu -8 304 1 627 197 0 16 chr3 7295859 7295981 -220228597 - FRAM SINE Alu 0 176 57 1922 125 3 27 chr3 7296190 7296487 -220228091 + AluSx SINE Alu 1 290 -22 449 274 37 22 chr3 7296487 7296612 -220227966 + MIR3 SINE MIR 58 187 -21 1691 157 13 53 chr3 7296710 7297028 -220227550 + AluSx SINE Alu 1 305 -7 2254 108 0 0 chr3 7297039 7297346 -220227232 + AluSx SINE Alu 1 307 -5 955 145 0 13 chr3 7297346 7297524 -220227054 + AluSg/x SINE Alu 132 307 0 1318 181 115 0 chr3 7297531 7297819 -220226759 - L1MC2 LINE L1 -22 6322 6002 22 0 0 0 chr3 7297820 7297842 -220226736 + AT_rich Low_complexity Low_complexity 1 22 0 1690 171 4 4 chr3 7297891 7298172 -220226406 - AluJb SINE Alu -31 281 1 1941 118 24 10 chr3 7298412 7298708 -220225870 + AluSx SINE Alu 1 300 -12 1014 146 6 0 chr3 7299004 7299175 -220225403 - AluJ SINE Alu 0 312 141 803 167 0 14 chr3 7299226 7299364 -220225214 - AluJ SINE Alu -175 137 2 363 324 171 0 chr3 7299430 7299600 -220224978 + MIR SINE MIR 52 250 -12 877 212 4 100 chr3 7299821 7300062 -220224516 - MER20 DNA MER1_type 0 219 2 334 191 32 0 chr3 7300181 7300244 -220224334 - MER97a DNA MER1_type? -717 177 113 1767 112 6 74 chr3 7300248 7300393 -220224185 + AluSx SINE Alu 1 115 -197 2160 78 28 0 chr3 7300393 7300677 -220223901 + AluSg SINE Alu 14 305 -5 1767 112 6 74 chr3 7300677 7300843 -220223735 + AluSx SINE Alu 115 291 -21 750 138 9 0 chr3 7300852 7300961 -220223617 + FLAM_C SINE Alu 2 111 -32 504 130 6 62 chr3 7300967 7301128 -220223450 + (GGA)n Simple_repeat Simple_repeat 3 154 0 345 263 32 0 chr3 7301155 7301250 -220223328 - MER97c DNA MER1_type? -966 124 27 213 227 0 30 chr3 7301260 7301326 -220223252 + CT-rich Low_complexity Low_complexity 4 67 0 787 163 7 22 chr3 7301404 7301539 -220223039 + FLAM_C SINE Alu 1 133 0 2496 135 46 14 chr3 7301574 7301604 -220222974 + MER65A LTR ERV1 1 29 -416 1905 126 0 0 chr3 7301604 7301875 -220222703 + AluSx SINE Alu 1 271 -41 2496 135 46 14 chr3 7301875 7302275 -220222303 + MER65A LTR ERV1 29 445 0 2012 127 13 0 chr3 7302768 7303067 -220221511 - AluSg SINE Alu -7 303 1 1801 128 3 61 chr3 7303122 7303435 -220221143 - AluSp SINE Alu -18 295 1 2016 123 14 0 chr3 7304020 7304313 -220220265 - AluSx SINE Alu -15 297 1 1989 135 0 3 chr3 7304317 7304621 -220219957 - AluSq SINE Alu -10 303 1 2132 129 0 0 chr3 7304810 7305121 -220219457 - AluSx SINE Alu -1 311 1 2067 118 10 0 chr3 7305694 7305990 -220218588 + AluSq SINE Alu 1 299 -14 2339 107 22 19 chr3 7305991 7306357 -220218221 + L1PA16 LINE L1 5800 6166 0 2198 157 60 35 chr3 7306480 7306932 -220217646 - MLT1C LTR MaLR 0 467 5 677 159 0 90 chr3 7306971 7307081 -220217497 + MER94 DNA DNA 2 98 -36 2091 110 3 13 chr3 7307081 7307380 -220217198 + AluSx SINE Alu 1 296 -16 677 159 0 90 chr3 7307380 7307414 -220217164 + MER94 DNA DNA 98 133 -1 1211 158 63 60 chr3 7307893 7308178 -220216400 - AluJo SINE Alu -4 308 23 242 303 121 0 chr3 7308594 7308693 -220215885 + L2 LINE L2 3161 3271 -1 1536 110 4 25 chr3 7309422 7309667 -220214911 - AluSq SINE Alu -7 306 67 1229 134 113 79 chr3 7309679 7309971 -220214607 - AluJo SINE Alu 0 302 1 224 339 58 35 chr3 7310171 7310263 -220214315 - MIR SINE MIR 0 262 163 1939 121 0 7 chr3 7310263 7310544 -220214034 - AluSg SINE Alu -31 279 1 224 339 58 35 chr3 7310544 7310622 -220213956 - MIR SINE MIR -99 163 88 187 111 0 0 chr3 7310911 7310938 -220213640 + L2 LINE L2 3268 3294 -19 1248 104 0 0 chr3 7311498 7311671 -220212907 - AluSp SINE Alu -9 304 132 1752 137 53 0 chr3 7311761 7312045 -220212533 - AluJb SINE Alu -13 299 1 427 193 23 23 chr3 7312124 7312212 -220212366 - L2 LINE L2 -5 3308 3221 22 0 0 0 chr3 7312324 7312346 -220212232 + AT_rich Low_complexity Low_complexity 1 22 0 1682 150 10 20 chr3 7313148 7313307 -220211271 - AluJo SINE Alu -22 290 134 2067 103 0 63 chr3 7313307 7313638 -220210940 - AluSg SINE Alu 0 310 1 1682 150 10 20 chr3 7313638 7313771 -220210807 - AluJo SINE Alu -178 134 1 382 296 53 59 chr3 7314081 7314250 -220210328 - MER5A DNA MER1_type 0 189 22 1692 157 7 20 chr3 7314949 7315249 -220209329 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 7316176 7316197 -220208381 + AT_rich Low_complexity Low_complexity 1 21 0 2094 109 3 0 chr3 7316456 7316760 -220207818 + AluSx SINE Alu 1 305 -7 292 357 62 37 chr3 7317745 7318070 -220206508 + LTR16C LTR ERVL 149 481 -10 516 239 93 71 chr3 7318094 7318413 -220206165 + Charlie7 DNA MER1_type 314 624 -1988 1668 192 13 0 chr3 7318413 7318721 -220205857 + AluJo SINE Alu 1 312 0 516 239 93 71 chr3 7318721 7318834 -220205744 + Charlie7 DNA MER1_type 624 2583 -29 774 90 0 0 chr3 7318854 7318954 -220205624 + HY3 scRNA scRNA 1 100 -1 36 23 0 0 chr3 7318959 7319002 -220205576 + AT_rich Low_complexity Low_complexity 1 43 0 457 152 0 43 chr3 7319185 7319277 -220205301 + AluJ/FRAM SINE Alu 223 310 -2 941 202 86 73 chr3 7319323 7319500 -220205078 + L1M4 LINE L1 5016 5189 -957 2021 136 13 0 chr3 7319500 7319808 -220204770 + AluSx SINE Alu 1 312 0 941 202 86 73 chr3 7319808 7319979 -220204599 + L1M4 LINE L1 5189 5372 -774 1813 129 3 45 chr3 7319979 7320290 -220204288 + AluSx SINE Alu 4 301 -11 941 202 86 73 chr3 7320290 7320312 -220204266 + L1M4 LINE L1 5372 5392 -754 242 188 83 0 chr3 7320322 7320370 -220204208 - L2 LINE L2 0 3272 3221 1399 187 16 50 chr3 7320927 7321248 -220203330 - AluJo SINE Alu -2 310 1 1845 147 3 7 chr3 7321710 7322002 -220202576 - AluJb SINE Alu -21 291 1 189 0 0 0 chr3 7322093 7322114 -220202464 + (A)n Simple_repeat Simple_repeat 1 21 0 6293 94 47 10 chr3 7322573 7323507 -220201071 + LTR5 LTR ERVK 1 969 0 1129 123 6 0 chr3 7324599 7324762 -220199816 - AluJ SINE Alu -14 298 135 201 74 0 0 chr3 7325030 7325057 -220199521 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 378 0 0 0 chr3 7325559 7325601 -220198977 + (TA)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr3 7325600 7325626 -220198952 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 280 238 71 0 chr3 7325626 7325710 -220198868 + L1MC4 LINE L1 6614 6703 -1339 288 0 0 0 chr3 7325719 7325751 -220198827 + (TA)n Simple_repeat Simple_repeat 1 32 0 2064 128 0 10 chr3 7325938 7326250 -220198328 - AluSg SINE Alu -1 309 1 1613 169 7 23 chr3 7326253 7326555 -220198023 - AluJb SINE Alu -15 297 1 444 277 98 27 chr3 7326857 7327041 -220197537 + MIR SINE MIR 66 262 0 802 141 8 0 chr3 7327147 7327275 -220197303 - AluJ SINE Alu -173 129 1 1504 106 78 78 chr3 7327355 7327648 -220196930 - AluSx SINE Alu -18 294 2 435 271 21 14 chr3 7328289 7328433 -220196145 - MIR SINE MIR 0 262 118 2284 80 0 7 chr3 7328433 7328733 -220195845 - AluSx SINE Alu -13 299 2 328 209 60 11 chr3 7328745 7328835 -220195743 + MLT1J LTR MaLR 416 615 0 2238 148 50 5 chr3 7329029 7329429 -220195149 - L1MC1 LINE L1 -5 6328 5911 2165 115 0 0 chr3 7329439 7329743 -220194835 - AluSx SINE Alu -8 304 1 860 272 158 14 chr3 7329757 7330125 -220194453 - LTR33 LTR ERVL -52 469 49 1012 167 9 79 chr3 7330132 7330359 -220194219 - AluJo SINE Alu -101 211 1 2029 113 3 3 chr3 7330550 7330842 -220193736 - AluSg SINE Alu -18 292 1 1395 168 40 37 chr3 7331203 7331500 -220193078 - AluJo SINE Alu -14 298 1 697 318 55 4 chr3 7331511 7331747 -220192831 - MIR SINE MIR -2 260 13 27 62 0 0 chr3 7332222 7332270 -220192308 + AT_rich Low_complexity Low_complexity 1 48 0 284 250 261 11 chr3 7332552 7332640 -220191938 - MIR SINE MIR -61 147 38 1192 253 48 24 chr3 7332729 7333065 -220191513 - ERVL LTR ERVL -2323 3441 3098 443 267 0 0 chr3 7333129 7333234 -220191344 + HERVL LTR ERVL 5269 5373 -281 593 181 0 0 chr3 7333235 7333329 -220191249 + AluJb SINE Alu 177 270 -42 2267 92 3 10 chr3 7334408 7334722 -220189856 + AluSp SINE Alu 2 313 0 1022 262 148 10 chr3 7334826 7335250 -220189328 + MLT1J2 LTR MaLR 1 450 0 722 266 28 28 chr3 7335373 7335587 -220188991 + MIR SINE MIR 1 214 -48 1253 102 43 132 chr3 7336711 7336854 -220187724 - L1MA5A LINE L1 -2 6301 6147 1965 134 0 0 chr3 7336854 7337144 -220187434 - AluSq SINE Alu -23 290 1 1253 102 43 132 chr3 7337144 7337189 -220187389 - L1MA5A LINE L1 -156 6147 6100 1911 121 3 16 chr3 7337189 7337496 -220187082 + AluSg SINE Alu 2 304 -6 2246 107 0 0 chr3 7337498 7337808 -220186770 + AluSx SINE Alu 3 312 0 1253 102 43 132 chr3 7337808 7337942 -220186636 - L1MA5A LINE L1 -204 6099 5991 638 193 25 0 chr3 7338095 7338214 -220186364 - AluJb SINE Alu -190 122 1 337 263 150 0 chr3 7338340 7338473 -220186105 - L3 LINE CR1 -153 1424 1272 1349 151 117 30 chr3 7339262 7339527 -220185051 - AluJo SINE Alu -14 298 11 1012 229 162 75 chr3 7339530 7339901 -220184677 + MLT1K LTR MaLR 27 429 -159 2137 104 0 10 chr3 7339946 7340254 -220184324 - AluSx SINE Alu -7 305 1 2231 179 35 31 chr3 7340254 7340333 -220184245 - Charlie1 DNA MER1_type -11 2750 2673 1907 153 0 0 chr3 7340333 7340633 -220183945 - AluSx SINE Alu -12 300 1 2231 179 35 31 chr3 7340633 7341095 -220183483 - Charlie1 DNA MER1_type -88 2673 2207 661 250 14 7 chr3 7341091 7341231 -220183347 - Charlie1 DNA MER1_type -2620 141 1 * 593 27 13 0 chr3 7341324 7341399 -220183179 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1601 175 14 0 chr3 7341399 7341677 -220182901 - AluJb SINE Alu -27 285 1 298 342 46 97 chr3 7341745 7341812 -220182766 - L2 LINE L2 -2 3270 3201 3113 173 39 22 chr3 7341812 7342253 -220182325 + MER6A DNA MER2_type 1 433 -432 2180 86 0 3 chr3 7342253 7342545 -220182033 - AluSc SINE Alu -18 291 1 2134 105 3 0 chr3 7342546 7342841 -220181737 - AluSx SINE Alu -16 296 1 3113 173 39 22 chr3 7342841 7342992 -220181586 + MER6A DNA MER2_type 432 605 0 298 342 46 97 chr3 7342992 7343357 -220181221 - L2 LINE L2 -71 3201 2860 2117 114 3 0 chr3 7343582 7343879 -220180699 + AluSg SINE Alu 3 300 -10 1504 253 30 39 chr3 7343998 7344214 -220180364 - LTR16A LTR ERVL 0 450 238 2064 123 0 0 chr3 7344214 7344507 -220180071 + AluSx SINE Alu 1 293 -19 1504 253 30 39 chr3 7344507 7344725 -220179853 - LTR16A LTR ERVL -212 238 20 247 356 9 0 chr3 7344895 7345010 -220179568 + L2 LINE L2 2829 2944 -370 1510 153 142 54 chr3 7345168 7345521 -220179057 - MLT1B LTR MaLR -6 384 1 626 283 76 22 chr3 7345616 7345799 -220178779 - MIR SINE MIR -14 248 49 2257 103 0 0 chr3 7345799 7346110 -220178468 + AluSx SINE Alu 1 311 -1 626 283 76 22 chr3 7346110 7346149 -220178429 - MIR SINE MIR -213 49 14 1718 126 0 37 chr3 7346920 7347214 -220177364 - AluJb SINE Alu -18 294 12 974 243 46 102 chr3 7347533 7348015 -220176563 + L2 LINE L2 2196 2650 -664 444 111 0 0 chr3 7348097 7348169 -220176409 - Alu SINE Alu -2 310 239 326 194 97 0 chr3 7348185 7348257 -220176321 - MER20B DNA MER1_type -498 285 207 2112 104 40 0 chr3 7348334 7348632 -220175946 - AluSx SINE Alu -2 310 1 849 205 21 38 chr3 7348635 7348874 -220175704 - MER20B DNA MER1_type -34 749 515 1054 267 140 32 chr3 7348980 7349444 -220175134 - MER20B DNA MER1_type -268 515 2 818 146 0 8 chr3 7349947 7350070 -220174508 + FLAM_C SINE Alu 6 127 -16 578 254 9 111 chr3 7350097 7350192 -220174386 + MIR SINE MIR 20 82 -180 1870 136 0 17 chr3 7350192 7350486 -220174092 - AluSx SINE Alu -23 289 1 578 254 9 111 chr3 7350486 7350607 -220173971 + MIR SINE MIR 82 214 -48 223 316 143 0 chr3 7350618 7350716 -220173862 + L2 LINE L2 3197 3308 -5 1873 113 57 0 chr3 7351173 7351456 -220173122 + AluSx SINE Alu 5 303 -9 649 298 102 80 chr3 7351499 7351939 -220172639 + L2 LINE L2 2814 3263 -9 185 108 27 0 chr3 7352358 7352395 -220172183 + (CCA)n Simple_repeat Simple_repeat 3 40 0 480 295 95 20 chr3 7352694 7352894 -220171684 - MIR SINE MIR -1 261 47 333 239 14 34 chr3 7353737 7353843 -220170735 + MIR SINE MIR 14 116 -92 457 304 125 18 chr3 7353933 7354157 -220170421 + MIR SINE MIR 3 250 -12 716 201 0 29 chr3 7354215 7354354 -220170224 - FLAM_C SINE Alu -3 140 6 2060 123 0 3 chr3 7354615 7354916 -220169662 - AluSx SINE Alu -12 300 1 254 259 111 0 chr3 7355395 7355476 -220169102 + MIR SINE MIR 114 203 -59 502 281 75 48 chr3 7355519 7355814 -220168764 + MLT1L LTR MaLR 3 305 -310 1921 136 0 28 chr3 7355817 7356134 -220168444 + AluJb SINE Alu 1 308 -4 4731 136 16 6 chr3 7356184 7356888 -220167690 - MER50 LTR ERV1 -23 711 1 711 261 96 5 chr3 7356912 7357130 -220167448 + MLT1L LTR MaLR 368 605 -10 2626 97 28 14 chr3 7357192 7357553 -220167025 - THE1C LTR MaLR 0 375 10 529 262 66 20 chr3 7357556 7357855 -220166723 + MLT1I LTR MaLR 61 409 0 793 147 0 29 chr3 7358018 7358154 -220166424 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 7358232 7358539 -220166039 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 7358544 7358566 -220166012 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 7358676 7358964 -220165614 + AluSx SINE Alu 1 296 -16 1988 144 100 17 chr3 7359232 7359592 -220164986 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 7359684 7359803 -220164775 + L2 LINE L2 3173 3294 -19 2214 101 3 7 chr3 7359894 7360201 -220164377 - AluSx SINE Alu -6 306 1 2185 166 69 51 chr3 7360229 7360723 -220163855 - MLT1D LTR MaLR -2 503 1 206 286 0 0 chr3 7360723 7360772 -220163806 + MIR SINE MIR 159 207 -55 292 323 21 0 chr3 7360961 7361054 -220163524 - MIR3 SINE MIR -6 202 108 278 283 76 0 chr3 7361421 7361513 -220163065 + MLT1K LTR MaLR 210 308 -280 1882 124 9 25 chr3 7361895 7362210 -220162368 - AluSx SINE Alu -2 310 1 251 295 67 0 chr3 7362385 7362490 -220162088 - L1ME4a LINE L1 0 6121 6010 593 338 18 14 chr3 7362548 7362767 -220161811 - MIR SINE MIR -1 261 42 1993 110 12 95 chr3 7362985 7363047 -220161531 + L1PBa LINE L1 1552 1618 -5245 2105 108 0 29 chr3 7363047 7363361 -220161217 + AluSx SINE Alu 1 305 -7 1993 110 12 95 chr3 7363361 7363708 -220160870 + L1PBa LINE L1 1618 1927 -4936 274 171 157 14 chr3 7363859 7363929 -220160649 + L2 LINE L2 3229 3308 -5 817 213 38 85 chr3 7364034 7364142 -220160436 - MIR SINE MIR -10 252 159 1862 122 40 0 chr3 7364142 7364438 -220160140 + AluSx SINE Alu 1 308 -4 817 213 38 85 chr3 7364438 7364564 -220160014 - MIR SINE MIR -103 159 29 592 326 84 45 chr3 7365272 7365791 -220158787 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 7365908 7365935 -220158643 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1958 126 0 3 chr3 7365935 7366220 -220158358 - AluSx SINE Alu -28 284 1 1306 194 0 68 chr3 7366222 7366546 -220158032 - AluJo SINE Alu -10 302 1 359 203 100 144 chr3 7366675 7366946 -220157632 + MLT1K LTR MaLR 330 588 0 360 0 0 0 chr3 7367029 7367069 -220157509 + (A)n Simple_repeat Simple_repeat 1 40 0 874 269 129 6 chr3 7367222 7367556 -220157022 - L3 LINE CR1 -42 1535 1161 263 93 23 0 chr3 7367656 7367699 -220156879 + (CA)n Simple_repeat Simple_repeat 2 45 0 399 293 73 44 chr3 7367758 7367963 -220156615 - MIR SINE MIR -21 241 31 268 304 14 109 chr3 7368634 7368772 -220155806 - MIR SINE MIR -106 156 32 503 259 45 58 chr3 7368815 7369058 -220155520 + L1MD2 LINE L1 5788 6027 -139 1887 137 14 0 chr3 7369058 7369350 -220155228 - AluJo SINE Alu -16 296 1 624 219 14 0 chr3 7369351 7369497 -220155081 + L1MA10 LINE L1 6174 6321 -13 702 75 0 0 chr3 7369523 7369617 -220154961 + L1PA5 LINE L1 6061 6154 0 29 0 0 0 chr3 7369646 7369675 -220154903 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 7369711 7369849 -220154729 + (TA)n Simple_repeat Simple_repeat 2 144 0 254 324 102 25 chr3 7369856 7370087 -220154491 + L2 LINE L2 2791 3037 -276 231 307 86 57 chr3 7370123 7370263 -220154315 + L2 LINE L2 3168 3311 -2 1800 150 0 25 chr3 7370279 7370459 -220154119 - AluSx SINE Alu 0 312 142 2262 81 3 7 chr3 7370459 7370756 -220153822 - AluSg SINE Alu -13 297 2 1800 150 0 25 chr3 7370756 7370895 -220153683 - AluSx SINE Alu -170 142 1 186 43 0 0 chr3 7370960 7370983 -220153595 + (TA)n Simple_repeat Simple_repeat 1 23 0 1598 153 20 20 chr3 7370983 7371277 -220153301 - AluJb SINE Alu -14 298 5 252 100 0 0 chr3 7371287 7371327 -220153251 + (TG)n Simple_repeat Simple_repeat 1 40 0 1626 177 7 11 chr3 7371327 7371475 -220153103 - AluJo SINE Alu -31 281 133 2292 61 0 52 chr3 7371475 7371801 -220152777 - AluY SINE Alu -2 309 1 863 150 15 0 chr3 7371801 7371934 -220152644 - AluJo SINE Alu -177 135 1 435 301 58 13 chr3 7372033 7372189 -220152389 + MIR SINE MIR 61 223 -39 334 281 47 64 chr3 7372287 7372458 -220152120 - MIR SINE MIR -50 212 45 1517 179 0 32 chr3 7372662 7372974 -220151604 - AluJo SINE Alu 0 312 11 2054 106 10 0 chr3 7373127 7373419 -220151159 - AluSq SINE Alu -18 295 1 468 0 0 0 chr3 7373760 7373812 -220150766 + (TG)n Simple_repeat Simple_repeat 2 53 0 521 208 31 6 chr3 7373877 7373892 -220150686 + CT-rich Low_complexity Low_complexity 1 14 -149 1817 111 47 11 chr3 7373892 7374171 -220150407 - AluSx SINE Alu -23 289 1 521 208 31 6 chr3 7374171 7374314 -220150264 + CT-rich Low_complexity Low_complexity 14 163 0 2253 99 0 0 chr3 7374314 7374617 -220149961 - AluSx SINE Alu -9 303 1 730 157 0 57 chr3 7374617 7374757 -220149821 - AluJo/FLAM SINE Alu -170 132 1 356 259 61 83 chr3 7374807 7375035 -220149543 + MER102b DNA MER1_type 118 340 -1 579 230 182 7 chr3 7375719 7375867 -220148711 + MER5A DNA MER1_type 1 174 -15 782 172 0 8 chr3 7375881 7376015 -220148563 + FLAM_C SINE Alu 1 133 0 327 65 0 0 chr3 7376015 7376061 -220148517 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1936 117 17 17 chr3 7376113 7376412 -220148166 + AluSx SINE Alu 1 299 -13 1564 180 79 75 chr3 7376461 7376532 -220148046 - Charlie1b DNA MER1_type -2238 523 454 2075 117 0 3 chr3 7376532 7376831 -220147747 + AluSx SINE Alu 1 298 -14 1564 180 79 75 chr3 7376831 7377280 -220147298 - Charlie1b DNA MER1_type -2307 454 1 2071 110 10 0 chr3 7377383 7377682 -220146896 + AluSq SINE Alu 2 303 -10 236 302 15 65 chr3 7377702 7377820 -220146758 + MIR SINE MIR 46 157 -51 2208 65 0 29 chr3 7377820 7378126 -220146452 + AluY SINE Alu 1 297 -14 236 302 15 65 chr3 7378126 7378145 -220146433 + MIR SINE MIR 157 175 -33 189 94 0 0 chr3 7379170 7379202 -220145376 + (GGTTG)n Simple_repeat Simple_repeat 2 33 0 1758 149 0 34 chr3 7379290 7379613 -220144965 - AluSx SINE Alu 0 312 1 271 167 111 0 chr3 7379748 7379802 -220144776 - MIR SINE MIR -80 182 123 646 208 60 24 chr3 7380053 7380221 -220144357 - MIR SINE MIR -17 245 72 280 231 0 0 chr3 7380485 7380537 -220144041 - 5S rRNA rRNA -69 52 1 2184 153 46 57 chr3 7380719 7381147 -220143431 + L1MB4 LINE L1 5709 6133 -47 1599 175 3 3 chr3 7381147 7381432 -220143146 + AluJb SINE Alu 11 295 -17 2184 153 46 57 chr3 7381432 7381480 -220143098 + L1MB4 LINE L1 6133 6180 0 181 200 25 0 chr3 7382123 7382163 -220142415 + L2 LINE L2 3227 3267 -5 2138 117 3 0 chr3 7382240 7382548 -220142030 + AluSq SINE Alu 1 309 -4 676 260 250 32 chr3 7382920 7383232 -220141346 - MLT1K LTR MaLR -3 585 206 275 262 0 0 chr3 7383252 7383313 -220141265 - MLT1K LTR MaLR -523 65 5 336 255 92 10 chr3 7383398 7383496 -220141082 + MIR SINE MIR 2 107 -155 557 245 182 10 chr3 7383511 7383703 -220140875 - MIR SINE MIR -5 257 33 342 76 0 45 chr3 7383930 7383996 -220140582 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 2006 110 3 3 chr3 7384008 7384299 -220140279 - AluSx SINE Alu -21 291 1 222 224 129 12 chr3 7385360 7385445 -220139133 - MIR SINE MIR -69 193 99 336 198 143 11 chr3 7385592 7385683 -220138895 - MER5A DNA MER1_type -83 106 4 1040 148 61 13 chr3 7385780 7386010 -220138568 + MER33 DNA MER1_type 60 300 -24 1563 164 7 14 chr3 7386010 7386296 -220138282 - AluJo SINE Alu -15 297 14 1002 196 23 46 chr3 7386358 7386577 -220138001 + MER20 DNA MER1_type 1 214 -5 333 284 129 32 chr3 7386597 7386752 -220137826 + L2 LINE L2 3137 3306 -7 216 175 175 0 chr3 7387442 7387499 -220137079 + MIR SINE MIR 34 100 -108 2050 116 0 0 chr3 7387545 7387829 -220136749 - AluSc SINE Alu -25 284 1 707 283 0 12 chr3 7388165 7388338 -220136240 + MIR SINE MIR 68 238 -24 230 256 14 145 chr3 7388394 7388601 -220135977 + L2 LINE L2 3001 3180 -92 418 258 144 6 chr3 7388716 7388883 -220135695 + MER102b DNA MER1_type 103 292 -49 277 267 0 27 chr3 7388900 7388975 -220135603 + MER94 DNA DNA 1 73 -61 1244 136 117 0 chr3 7389139 7389227 -220135351 - MER30 DNA MER1_type 0 230 154 2385 52 0 0 chr3 7389227 7389516 -220135062 + AluSc SINE Alu 1 289 -20 1244 136 117 0 chr3 7389516 7389633 -220134945 - MER30 DNA MER1_type -76 154 1 534 225 113 31 chr3 7389638 7389798 -220134780 - MIR SINE MIR -61 201 29 382 283 5 43 chr3 7389906 7390090 -220134488 + CT-rich Low_complexity Low_complexity 2 178 0 1812 142 14 7 chr3 7390097 7390392 -220134186 - AluJb SINE Alu -15 297 1 183 217 0 0 chr3 7390477 7390537 -220134041 + CT-rich Low_complexity Low_complexity 2 61 0 1710 172 3 3 chr3 7391043 7391339 -220133239 + AluJb SINE Alu 1 296 -16 427 118 24 0 chr3 7391502 7391587 -220132991 + GA-rich Low_complexity Low_complexity 2 88 0 2250 100 0 0 chr3 7392187 7392488 -220132090 + AluSx SINE Alu 1 301 -11 193 313 205 0 chr3 7392530 7392613 -220131965 + L2 LINE L2 3155 3254 -18 268 234 0 0 chr3 7392643 7392707 -220131871 + MIR SINE MIR 67 130 -132 440 280 213 14 chr3 7392925 7393132 -220131446 + MIR SINE MIR 14 261 -1 305 276 83 0 chr3 7393849 7393967 -220130611 + MIR SINE MIR 24 152 -56 308 330 144 0 chr3 7394311 7394484 -220130094 - MIR SINE MIR -30 232 35 23 54 0 0 chr3 7394527 7394564 -220130014 + AT_rich Low_complexity Low_complexity 1 37 0 2023 124 0 16 chr3 7394564 7394878 -220129700 + AluSx SINE Alu 2 310 -2 329 244 47 0 chr3 7395001 7395087 -220129491 + L1MC5 LINE L1 7797 7886 -75 33 0 0 0 chr3 7395117 7395150 -220129428 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 7395767 7395796 -220128782 + AT_rich Low_complexity Low_complexity 1 29 0 313 269 37 105 chr3 7395882 7396176 -220128402 - L2 LINE L2 0 3313 3040 949 198 40 0 chr3 7396178 7396380 -220128198 + AluJb SINE Alu 87 296 -16 349 273 77 67 chr3 7396380 7396646 -220127932 - L2 LINE L2 -219 3053 2782 643 233 91 6 chr3 7396765 7396941 -220127637 - MER91A DNA MER1_type -2 194 4 198 283 233 33 chr3 7396978 7397098 -220127480 + L2 LINE L2 3125 3268 -4 1916 146 0 3 chr3 7397219 7397514 -220127064 - AluSx SINE Alu -18 294 1 428 268 141 0 chr3 7397698 7397840 -220126738 - MIR3 SINE MIR -8 200 39 277 255 87 47 chr3 7398105 7398254 -220126324 - L2 LINE L2 -421 2893 2739 717 173 8 30 chr3 7398419 7398552 -220126026 + FLAM_C SINE Alu 2 131 -12 339 167 0 0 chr3 7398557 7398623 -220125955 + G-rich Low_complexity Low_complexity 4 69 0 427 363 87 5 chr3 7398635 7398897 -220125681 - L1MDa LINE L1 -2875 3665 2357 253 391 0 0 chr3 7399007 7399168 -220125410 + T-rich Low_complexity Low_complexity 2 162 0 340 313 119 66 chr3 7400917 7401160 -220123418 + L2 LINE L2 3014 3269 -3 848 259 23 100 chr3 7401335 7401817 -220122761 + MER34 LTR ERV1 1 445 -97 726 124 0 0 chr3 7401818 7401915 -220122663 + FLAM_C SINE Alu 21 117 -26 257 77 0 0 chr3 7402182 7402221 -220122357 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 7402281 7402490 -220122088 + MER82 DNA MER2_type 10 220 -433 431 95 0 0 chr3 7402723 7402786 -220121792 - Alu SINE Alu -7 303 241 1498 264 19 16 chr3 7402787 7403155 -220121423 + MER82 DNA MER2_type 212 580 -73 1000 251 127 39 chr3 7404961 7405128 -220119450 - MLT1F1 LTR MaLR -1 566 415 1573 122 80 0 chr3 7405128 7405365 -220119213 + AluSx SINE Alu 44 299 -13 1000 251 127 39 chr3 7405365 7405642 -220118936 - MLT1F1 LTR MaLR -152 415 104 234 220 20 140 chr3 7406241 7406341 -220118237 + LTR16A1 LTR ERVL 20 107 -350 385 229 99 15 chr3 7406456 7406587 -220117991 + LTR16A1 LTR ERVL 313 454 -3 2103 104 3 0 chr3 7406972 7407259 -220117319 + AluSq SINE Alu 1 288 -25 281 358 9 18 chr3 7407340 7407449 -220117129 + MIR SINE MIR 14 121 -141 1653 158 0 0 chr3 7407499 7407759 -220116819 - AluJo SINE Alu -21 291 32 781 160 40 20 chr3 7407759 7407909 -220116669 - MLT1D LTR MaLR -24 481 329 239 184 118 0 chr3 7407975 7408051 -220116527 + MER77 LTR ERV1 144 228 -377 919 56 17 39 chr3 7408235 7408493 -220116085 + (TG)n Simple_repeat Simple_repeat 1 252 0 661 228 39 22 chr3 7409119 7409299 -220115279 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7409510 7409749 -220114829 + L2 LINE L2 2734 2977 -337 2401 59 0 3 chr3 7409818 7410122 -220114456 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7410131 7410411 -220114167 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7410414 7410465 -220114113 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7410583 7411036 -220113542 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7411065 7411093 -220113485 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7411093 7411136 -220113442 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7411136 7411253 -220113325 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7412024 7412129 -220112449 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7412502 7412679 -220111899 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7412939 7413238 -220111340 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7413264 7413427 -220111151 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7413427 7413729 -220110849 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7413737 7413923 -220110655 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7413956 7414123 -220110455 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7414123 7414359 -220110219 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7414359 7414636 -220109942 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7414758 7414848 -220109730 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7415418 7415537 -220109041 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7416679 7416744 -220107834 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7416744 7417284 -220107294 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7417284 7417611 -220106967 - MLT1K LTR MaLR -125 463 126 290 216 0 18 chr3 7417829 7417940 -220106638 + (TTTA)n Simple_repeat Simple_repeat 2 110 0 292 225 113 0 chr3 7417955 7418026 -220106552 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7418043 7418459 -220106119 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7418699 7418828 -220105750 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7419348 7419498 -220105080 - MIR SINE MIR -74 188 21 911 176 23 0 chr3 7419952 7420128 -220104450 - FRAM SINE Alu -1 175 1 2057 113 7 3 chr3 7420319 7420610 -220103968 + AluSq SINE Alu 1 292 -21 1224 135 45 0 chr3 7420758 7420958 -220103620 - L1MA5A LINE L1 -4 6293 6085 2892 90 37 62 chr3 7421233 7421492 -220103086 + MER39B LTR ERV1 1 246 -407 959 194 105 112 chr3 7421492 7421823 -220102755 + AluSx SINE Alu 1 329 0 2892 90 37 62 chr3 7421823 7422026 -220102552 + MER39B LTR ERV1 246 453 -200 802 238 31 36 chr3 7421998 7422221 -220102357 + Charlie2a DNA MER1_type 1505 1726 -1136 * 2157 156 104 5 chr3 7422221 7422645 -220101933 + Tigger2 DNA MER2_type 1 466 -2252 766 216 0 0 chr3 7422651 7422799 -220101779 + AluSg/x SINE Alu 137 284 -28 228 35 0 0 chr3 7422809 7422838 -220101740 + (CA)n Simple_repeat Simple_repeat 1 29 0 2344 124 48 3 chr3 7422844 7423215 -220101363 + Tigger2 DNA MER2_type 2331 2718 0 2018 213 171 41 chr3 7423218 7423627 -220100951 + Charlie2a DNA MER1_type 1727 2082 -780 2351 113 0 3 chr3 7423627 7423937 -220100641 + AluJo SINE Alu 1 309 -3 2018 213 171 41 chr3 7423937 7424405 -220100173 + Charlie2a DNA MER1_type 2082 2718 -144 3121 124 115 17 chr3 7424983 7425572 -220099006 + LTR24C LTR ERV1 2 466 -1 345 93 0 0 chr3 7425752 7425806 -220098772 + (CA)n Simple_repeat Simple_repeat 1 54 0 260 296 111 19 chr3 7426071 7426233 -220098345 - MIR SINE MIR -67 195 19 600 210 50 22 chr3 7426316 7426497 -220098081 - MIR SINE MIR -49 213 28 2231 107 0 3 chr3 7426821 7427120 -220097458 + AluSx SINE Alu 4 301 -11 21 0 0 0 chr3 7428788 7428809 -220095769 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 7429885 7429910 -220094668 + AT_rich Low_complexity Low_complexity 1 25 0 568 229 41 0 chr3 7431219 7431341 -220093237 + FLAM_A SINE Alu 1 127 -6 23 0 0 0 chr3 7431341 7431364 -220093214 + AT_rich Low_complexity Low_complexity 1 23 0 857 200 62 19 chr3 7431898 7432108 -220092470 - MER20 DNA MER1_type 0 219 1 260 275 142 8 chr3 7432580 7432700 -220091878 + L2 LINE L2 2923 3058 -214 609 217 141 30 chr3 7432904 7433102 -220091476 + MIR SINE MIR 43 262 0 235 139 0 0 chr3 7433651 7433687 -220090891 + LTR33 LTR ERVL 3 38 -483 230 299 21 21 chr3 7433954 7434051 -220090527 + LTR33 LTR ERVL 411 507 -14 243 267 28 125 chr3 7434481 7434657 -220089921 + MER5B DNA MER1_type 3 161 -17 272 272 62 0 chr3 7434714 7434795 -220089783 + L2 LINE L2 3150 3235 -37 197 275 114 30 chr3 7435028 7435159 -220089419 - MIR3 SINE MIR -66 142 1 195 229 14 71 chr3 7435466 7435536 -220089042 - MER5A DNA MER1_type -36 153 88 354 259 47 57 chr3 7435757 7435950 -220088628 + MIR3 SINE MIR 3 193 -15 330 45 0 0 chr3 7435958 7436002 -220088576 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr3 7439068 7439095 -220085483 + GC_rich Low_complexity Low_complexity 1 27 0 2288 64 4 0 chr3 7440363 7440644 -220083934 - AluY SINE Alu -29 282 1 31 0 0 0 chr3 7441602 7441633 -220082945 + AT_rich Low_complexity Low_complexity 1 31 0 1689 86 9 0 chr3 7441633 7441866 -220082712 - L1MA2 LINE L1 0 6304 6070 1932 144 0 34 chr3 7441955 7442275 -220082303 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 7443660 7443681 -220080897 + AT_rich Low_complexity Low_complexity 1 21 0 2470 84 0 0 chr3 7444343 7444640 -220079938 - AluSq SINE Alu -16 297 1 2057 121 0 0 chr3 7446919 7447201 -220077377 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr3 7447206 7447229 -220077349 + (CA)n Simple_repeat Simple_repeat 2 24 0 202 222 79 32 chr3 7447288 7447351 -220077227 - MIR3 SINE MIR -14 194 129 961 105 14 0 chr3 7447665 7447808 -220076770 - AluSc SINE Alu -1 308 164 255 219 110 24 chr3 7447866 7447948 -220076630 + L2 LINE L2 3184 3272 0 443 271 7 52 chr3 7448007 7448162 -220076416 - MER103 DNA DNA 0 166 19 337 288 87 62 chr3 7448714 7449082 -220075496 + L2 LINE L2 2919 3295 -18 2163 95 18 7 chr3 7450365 7450668 -220073910 + AluSq SINE Alu 1 306 0 1937 143 7 7 chr3 7450982 7451283 -220073295 + AluSx SINE Alu 1 301 -11 1591 184 41 17 chr3 7452302 7452662 -220071916 + L1MB3 LINE L1 5350 5914 -257 393 39 0 0 chr3 7452662 7452713 -220071865 + (CA)n Simple_repeat Simple_repeat 1 51 0 1591 184 41 17 chr3 7452713 7452768 -220071810 + L1MB3 LINE L1 5914 5966 -205 866 174 30 18 chr3 7452774 7452941 -220071637 + L1MB3 LINE L1 6014 6182 -1 21 71 0 0 chr3 7453026 7453068 -220071510 + AT_rich Low_complexity Low_complexity 1 42 0 1476 186 13 68 chr3 7453643 7453950 -220070628 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 7454283 7454423 -220070155 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 7454481 7454629 -220069949 - Tigger7 DNA MER2_type -1 2490 2343 344 171 100 0 chr3 7454648 7454718 -220069860 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 7454915 7455058 -220069520 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 7455376 7455665 -220068913 + AluSx SINE Alu 1 301 -11 2312 78 7 0 chr3 7455676 7455972 -220068606 + AluY SINE Alu 1 298 -13 842 102 0 121 chr3 7455973 7456139 -220068439 + THE1C LTR MaLR 230 375 0 188 359 60 17 chr3 7456642 7456759 -220067819 - L2 LINE L2 -10 3262 3141 191 297 55 22 chr3 7456785 7456876 -220067702 - MIR3 SINE MIR -14 194 101 6616 33 0 0 chr3 7457028 7457911 -220066667 - L1P2 LINE L1 -669 5485 4603 2345 87 0 3 chr3 7557983 7558283 -219966295 + AluY SINE Alu 1 299 -12 2173 104 3 3 chr3 7558436 7558724 -219965854 + AluSq SINE Alu 1 288 -25 278 358 9 18 chr3 7558805 7558914 -219965664 + MIR SINE MIR 14 121 -141 1762 164 21 3 chr3 7558964 7559250 -219965328 - AluJb SINE Alu -21 291 1 1314 149 0 0 chr3 7559250 7559451 -219965127 - LTR26B LTR ERV1 -327 204 4 415 253 114 32 chr3 7559617 7559775 -219964803 - MIR3 SINE MIR 0 208 38 1071 103 0 7 chr3 7560170 7560316 -219964262 - AluSg/x SINE Alu -30 279 135 412 351 0 0 chr3 7561433 7561544 -219963034 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 7561552 7561575 -219963003 + AT_rich Low_complexity Low_complexity 1 23 0 2737 103 8 5 chr3 7561634 7562021 -219962557 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 7562915 7563065 -219961513 - MER5A DNA MER1_type -10 179 1 216 210 65 32 chr3 7563085 7563147 -219961431 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 7563175 7563210 -219961368 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 377 358 23 6 chr3 7563585 7563761 -219960817 + MIR3 SINE MIR 17 195 -13 1862 199 16 101 chr3 7563853 7564400 -219960178 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 7564580 7564654 -219959924 + (TA)n Simple_repeat Simple_repeat 1 75 0 208 274 170 28 chr3 7564899 7565005 -219959573 - MIR3 SINE MIR -4 204 84 315 281 183 7 chr3 7565381 7565534 -219959044 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 7566441 7566496 -219958082 - MIR3 SINE MIR 0 208 154 412 263 53 0 chr3 7566498 7566631 -219957947 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 7566687 7566764 -219957814 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 7567137 7567204 -219957374 - L2 LINE L2 -7 3265 3198 2230 123 3 0 chr3 7567371 7567680 -219956898 + AluSq SINE Alu 1 310 -3 1215 260 59 52 chr3 7567770 7568231 -219956347 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 7568253 7568317 -219956261 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 7568317 7568711 -219955867 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 7568788 7569266 -219955312 - LTR50 LTR ERVL 0 795 124 1521 164 115 86 chr3 7569408 7569925 -219954653 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 7569943 7570130 -219954448 - MIR SINE MIR -21 241 47 1313 178 24 0 chr3 7571037 7571250 -219953328 - AluJo SINE Alu -86 226 9 357 301 56 109 chr3 7571291 7571666 -219952912 + L2 LINE L2 2918 3272 0 2098 196 107 11 chr3 7572068 7572350 -219952228 - MLT1D LTR MaLR 0 505 161 1774 174 13 30 chr3 7572350 7572649 -219951929 - AluJo SINE Alu -18 294 1 2098 196 107 11 chr3 7572649 7572824 -219951754 - MLT1D LTR MaLR -344 161 4 22 35 0 0 chr3 7574404 7574433 -219950145 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 7574911 7575026 -219949552 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 7575378 7575444 -219949134 + AT_rich Low_complexity Low_complexity 1 66 0 351 78 0 0 chr3 7575693 7575744 -219948834 + (TG)n Simple_repeat Simple_repeat 2 52 0 337 276 0 11 chr3 7575746 7575833 -219948745 - LTR67 LTR ERVL -12 545 460 345 235 43 17 chr3 7575842 7575957 -219948621 - L1ME LINE L1 -374 5747 5630 298 290 30 53 chr3 7576489 7576620 -219947958 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 7577348 7577407 -219947171 + (TA)n Simple_repeat Simple_repeat 2 60 0 721 251 55 90 chr3 7577473 7577854 -219946724 + MLT1I LTR MaLR 31 402 -7 203 296 59 89 chr3 7577863 7577998 -219946580 - MIR SINE MIR -61 147 17 448 305 68 34 chr3 7579141 7579179 -219945399 - Charlie8 DNA MER1_type -4 1413 1378 393 22 0 0 chr3 7579179 7579225 -219945353 + (CA)n Simple_repeat Simple_repeat 2 47 0 448 305 68 34 chr3 7579225 7579485 -219945093 - Charlie8 DNA MER1_type -39 1378 5 331 195 26 26 chr3 7580010 7580087 -219944491 - MLT1L LTR MaLR -536 79 3 200 298 0 0 chr3 7580102 7580159 -219944419 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 7580236 7580264 -219944314 + AT_rich Low_complexity Low_complexity 1 28 0 1061 267 70 26 chr3 7580297 7580862 -219943716 - L2 LINE L2 -159 3154 2570 1794 161 7 20 chr3 7580891 7581189 -219943389 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 7581192 7581215 -219943363 + (TA)n Simple_repeat Simple_repeat 2 24 0 223 338 13 0 chr3 7582358 7582435 -219942143 - MIR SINE MIR -63 145 68 192 293 35 0 chr3 7583163 7583221 -219941357 + MIR3 SINE MIR 112 171 -37 375 301 155 14 chr3 7583934 7584153 -219940425 - MIR SINE MIR 0 262 13 203 79 26 0 chr3 7585150 7585188 -219939390 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 911 146 189 5 chr3 7586031 7586216 -219938362 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 7586379 7586402 -219938176 + AT_rich Low_complexity Low_complexity 1 23 0 2270 112 0 0 chr3 7586430 7586733 -219937845 - AluSx SINE Alu -9 303 1 330 365 0 0 chr3 7586889 7587004 -219937574 - MIR3 SINE MIR -23 185 71 291 163 0 0 chr3 7587004 7587053 -219937525 + L1MC3 LINE L1 7045 7093 -692 283 262 24 12 chr3 7587057 7587141 -219937437 + MLT1F1 LTR MaLR 40 124 -443 2087 191 66 58 chr3 7587147 7587737 -219936841 + L1MC3 LINE L1 7191 7785 0 2202 112 0 13 chr3 7588524 7588827 -219935751 - AluSx SINE Alu -13 299 1 2071 124 0 0 chr3 7589828 7590133 -219934445 + AluSx SINE Alu 1 305 0 522 281 67 12 chr3 7590547 7590711 -219933867 - MER5B DNA MER1_type 0 178 6 273 87 0 43 chr3 7591423 7591469 -219933109 + L2 LINE L2 3195 3238 -75 2165 108 3 0 chr3 7592081 7592376 -219932202 + AluSp SINE Alu 1 296 -17 388 363 57 6 chr3 7592564 7592721 -219931857 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 7592829 7592857 -219931721 + AT_rich Low_complexity Low_complexity 1 28 0 1734 190 7 3 chr3 7592905 7593200 -219931378 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr3 7593277 7593298 -219931280 + AT_rich Low_complexity Low_complexity 1 21 0 2361 123 5 32 chr3 7596714 7597088 -219927490 - THE1B LTR MaLR 0 364 1 8147 127 30 8 chr3 7597417 7598729 -219925849 - Tigger1 DNA MER2_type 0 2418 1079 3596 134 107 6 chr3 7598718 7599354 -219925224 - Tigger1 DNA MER2_type -1656 762 63 * 341 211 273 19 chr3 7601206 7601367 -219923211 - L1MC4a LINE L1 -1859 5949 5748 1690 80 0 0 chr3 7601502 7601715 -219922863 + AluSg SINE Alu 1 213 -97 401 236 183 21 chr3 7601757 7601948 -219922630 - L1MC4a LINE L1 -2291 5517 5296 549 300 143 29 chr3 7601984 7602528 -219922050 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 7602799 7602825 -219921753 + AT_rich Low_complexity Low_complexity 1 26 0 385 225 36 94 chr3 7603886 7603994 -219920584 + L2 LINE L2 3182 3282 -31 2533 92 30 11 chr3 7603994 7604362 -219920216 - THE1C LTR MaLR 0 375 1 385 225 36 94 chr3 7604362 7604391 -219920187 + L2 LINE L2 3282 3311 -2 562 280 13 13 chr3 7604395 7604545 -219920033 + MIR SINE MIR 34 183 -79 1659 191 40 3 chr3 7604798 7605123 -219919455 + MER1B DNA MER1_type 1 337 0 266 284 105 11 chr3 7605214 7605309 -219919269 - L3 LINE CR1 -278 1299 1196 305 261 76 32 chr3 7605883 7606040 -219918538 - L1ME LINE L1 -283 5838 5675 269 254 211 7 chr3 7606057 7606199 -219918379 - L1ME LINE L1 -1445 4701 4531 1896 147 18 0 chr3 7607095 7607380 -219917198 + AluJb SINE Alu 9 298 -14 254 267 67 33 chr3 7607620 7607710 -219916868 + MIR SINE MIR 13 105 -157 1088 122 0 33 chr3 7610864 7611044 -219913534 + AluSg/x SINE Alu 124 297 -12 186 43 0 0 chr3 7611355 7611378 -219913200 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr3 7614399 7614430 -219910148 + AT_rich Low_complexity Low_complexity 1 31 0 427 255 135 20 chr3 7616204 7616404 -219908174 - MIR SINE MIR -9 253 31 256 282 0 113 chr3 7616914 7617038 -219907540 - MIR3 SINE MIR -12 196 87 2463 66 0 0 chr3 7617707 7618010 -219906568 - AluY SINE Alu -8 303 1 244 376 60 8 chr3 7618120 7618237 -219906341 + L2 LINE L2 3191 3313 0 276 274 140 18 chr3 7619304 7619361 -219905217 + L1MC/D LINE L1 5352 5401 -2407 1709 149 72 0 chr3 7619361 7619637 -219904941 - AluSx SINE Alu -16 296 1 276 274 140 18 chr3 7619637 7619743 -219904835 + L1MC/D LINE L1 5401 5535 -2273 515 297 0 0 chr3 7619915 7620026 -219904552 - MER81 DNA DNA 0 114 4 709 254 215 0 chr3 7620745 7620950 -219903628 + MIR SINE MIR 6 254 -8 391 352 49 6 chr3 7621218 7621380 -219903198 + MIR SINE MIR 81 249 -13 474 315 34 0 chr3 7621682 7621828 -219902750 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 7621875 7621931 -219902647 + (TG)n Simple_repeat Simple_repeat 1 56 0 475 233 302 0 chr3 7621975 7622147 -219902431 - MIR SINE MIR -10 252 29 2306 67 35 0 chr3 7622149 7622432 -219902146 - AluY SINE Alu -18 293 1 1852 156 3 7 chr3 7623205 7623506 -219901072 + AluJb SINE Alu 1 300 -12 505 288 113 19 chr3 7624033 7624245 -219900333 + HAL1 LINE L1 434 665 -1842 442 300 88 0 chr3 7624431 7624714 -219899864 + HAL1 LINE L1 984 1291 -1216 1837 238 175 50 chr3 7624716 7625635 -219898943 + HAL1 LINE L1 1340 2373 -134 212 292 79 22 chr3 7626063 7626152 -219898426 - MIR3 SINE MIR -25 183 90 2104 141 13 0 chr3 7626283 7626589 -219897989 + AluJo SINE Alu 1 310 -2 1676 209 107 43 chr3 7626942 7627454 -219897124 + MER90 LTR ERV1 70 614 0 575 204 160 18 chr3 7628055 7628280 -219896298 + MER112 DNA MER1_type 4 260 0 1688 148 17 31 chr3 7629665 7629956 -219894622 - AluJb SINE Alu -17 295 9 226 229 0 0 chr3 7630476 7630537 -219894041 + T-rich Low_complexity Low_complexity 1 61 0 8156 14 0 0 chr3 7630539 7631772 -219892806 - L1HS LINE L1 0 6155 4923 833 129 103 189 chr3 7632008 7632142 -219892436 + MER33 DNA MER1_type 1 145 -2440 1720 167 20 7 chr3 7632142 7632436 -219892142 - AluJb SINE Alu -14 298 1 833 129 103 189 chr3 7632436 7632651 -219891927 + MER33 DNA MER1_type 145 320 -4 533 236 48 36 chr3 7632878 7633043 -219891535 - MER5B DNA MER1_type -1 177 11 264 375 17 0 chr3 7633338 7633458 -219891120 + MIR SINE MIR 8 129 -133 854 131 77 0 chr3 7633647 7633777 -219890801 - FRAM SINE Alu -17 159 20 598 109 148 10 chr3 7633826 7633927 -219890651 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 7633932 7633955 -219890623 + AT_rich Low_complexity Low_complexity 1 23 0 4654 90 17 21 chr3 7634426 7634620 -219889958 + PABL_A LTR ERV1 1 194 -466 2233 94 0 7 chr3 7634620 7634917 -219889661 - AluSx SINE Alu -17 295 1 4654 90 17 21 chr3 7634917 7635376 -219889202 + PABL_A LTR ERV1 194 651 -9 1798 100 37 23 chr3 7636983 7637283 -219887295 - AluSq SINE Alu -9 304 1 1022 210 189 7 chr3 7637841 7638055 -219886523 + MER2 DNA MER2_type 1 283 -61 2327 94 0 0 chr3 7638055 7638354 -219886224 - AluSx SINE Alu -9 303 5 1022 210 189 7 chr3 7638354 7638430 -219886148 + MER2 DNA MER2_type 283 344 0 272 70 23 0 chr3 7638430 7638473 -219886105 + (GA)n Simple_repeat Simple_repeat 1 44 0 3013 251 57 23 chr3 7638501 7639531 -219885047 + L1ME1 LINE L1 3292 4356 -1790 2794 233 45 80 chr3 7639575 7639633 -219884945 + L1ME1 LINE L1 5353 5412 -754 1522 193 14 14 chr3 7639633 7639918 -219884660 + AluJb SINE Alu 1 285 -27 2794 233 45 80 chr3 7639918 7639980 -219884598 + L1ME1 LINE L1 5412 5475 -691 2060 131 7 0 chr3 7639980 7640271 -219884307 - AluSg SINE Alu -17 293 1 2794 233 45 80 chr3 7640271 7640774 -219883804 + L1ME1 LINE L1 5475 5994 -172 2196 112 0 0 chr3 7640774 7641068 -219883510 + AluSg SINE Alu 1 294 -16 2794 233 45 80 chr3 7641068 7641251 -219883327 + L1ME1 LINE L1 5994 6111 -55 2008 138 153 42 chr3 7641251 7641324 -219883254 - MSTA LTR MaLR 0 428 365 2441 49 0 30 chr3 7641324 7641629 -219882949 + AluY SINE Alu 1 296 -15 2008 138 153 42 chr3 7641629 7641940 -219882638 - MSTA LTR MaLR -63 365 1 2794 233 45 80 chr3 7641940 7641989 -219882589 + L1ME1 LINE L1 6111 6160 -6 1738 139 58 41 chr3 7642455 7642750 -219881828 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 7643089 7643115 -219881463 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 546 278 131 0 chr3 7643190 7643366 -219881212 - MIR SINE MIR -32 230 32 670 178 8 0 chr3 7643706 7643824 -219880754 - MLT1D LTR MaLR 0 505 387 2266 104 0 0 chr3 7644033 7644331 -219880247 - AluSx SINE Alu -3 309 12 1523 192 3 36 chr3 7644554 7644862 -219879716 + AluJo SINE Alu 1 298 -14 858 168 0 0 chr3 7644906 7645031 -219879547 + AluJb SINE Alu 1 125 -187 1845 158 18 0 chr3 7645892 7646176 -219878402 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 7646186 7646267 -219878311 + (TA)n Simple_repeat Simple_repeat 1 84 0 216 144 22 0 chr3 7646538 7646584 -219877994 + MIR SINE MIR 99 146 -62 2004 137 0 22 chr3 7646699 7647014 -219877564 + AluSx SINE Alu 3 310 -2 4460 183 19 25 chr3 7647295 7648175 -219876403 - L1MB8 LINE L1 0 6178 5304 833 199 6 0 chr3 7648178 7648334 -219876244 - FRAM SINE Alu 0 40 1 2054 181 57 53 chr3 7648336 7648464 -219876114 - L1MB8 LINE L1 -830 5316 5190 2039 125 4 4 chr3 7648464 7648766 -219875812 - AluSx SINE Alu 0 302 1 2054 181 57 53 chr3 7648766 7648891 -219875687 - L1MB8 LINE L1 -956 5190 5067 2267 110 0 10 chr3 7648891 7649200 -219875378 + AluSx SINE Alu 6 311 -1 2054 181 57 53 chr3 7649200 7649469 -219875109 - L1MB8 LINE L1 -1079 5067 4789 297 172 16 141 chr3 7649890 7650018 -219874560 + MLT1H LTR MaLR 438 549 0 376 249 115 91 chr3 7650106 7650164 -219874414 - L1ME4a LINE L1 -232 5889 5834 1887 135 7 0 chr3 7650164 7650445 -219874133 + AluSg SINE Alu 13 295 -15 376 249 115 91 chr3 7650445 7650639 -219873939 - L1ME4a LINE L1 -287 5834 5631 2154 102 10 7 chr3 7650886 7651180 -219873398 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 7651285 7651311 -219873267 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 209 173 154 19 chr3 7651398 7651450 -219873128 + L2 LINE L2 3252 3310 -3 2240 100 0 3 chr3 7651470 7651759 -219872819 + AluSx SINE Alu 1 288 -24 276 284 0 68 chr3 7654554 7654642 -219869936 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 7655828 7655854 -219868724 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 385 57 0 chr3 7657051 7657173 -219867405 + MIR SINE MIR 21 149 -113 1029 186 9 24 chr3 7658760 7658901 -219865677 + MER3 DNA MER1_type 2 141 -68 1936 143 7 7 chr3 7658901 7659188 -219865390 + AluSx SINE Alu 1 287 -25 1029 186 9 24 chr3 7659188 7659256 -219865322 + MER3 DNA MER1_type 141 208 -1 299 269 86 30 chr3 7659350 7659584 -219864994 + L1ME4a LINE L1 5873 6119 -2 685 224 39 86 chr3 7659671 7659926 -219864652 + MER112 DNA MER1_type 6 248 -12 1263 124 0 43 chr3 7660057 7660243 -219864335 + AluSx SINE Alu 1 178 -134 424 246 53 18 chr3 7660906 7661020 -219863558 + MIR3 SINE MIR 14 131 -77 1848 146 35 0 chr3 7662044 7662215 -219862363 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 7662215 7662261 -219862317 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1848 146 35 0 chr3 7662261 7662377 -219862201 - AluSx SINE Alu -200 112 1 257 109 455 0 chr3 7662766 7662821 -219861757 + MADE1 DNA Mariner 1 80 0 2170 100 7 0 chr3 7663272 7663583 -219860995 + AluSx SINE Alu 1 313 0 1900 167 0 0 chr3 7663602 7663890 -219860688 - AluJb SINE Alu -19 293 6 939 117 7 15 chr3 7663890 7664027 -219860551 - AluJb SINE Alu -176 136 1 339 314 58 19 chr3 7664185 7664341 -219860237 - MIR3 SINE MIR -8 200 39 2003 140 10 0 chr3 7664537 7664830 -219859748 + AluSx SINE Alu 1 296 -16 210 333 0 43 chr3 7665405 7665474 -219859104 - L3 LINE CR1 -4 1573 1508 1005 190 20 20 chr3 7665533 7665733 -219858845 - MER20 DNA MER1_type -19 200 1 760 222 102 9 chr3 7666173 7666389 -219858189 + MIR SINE MIR 14 249 -13 206 310 113 0 chr3 7666738 7666809 -219857769 + MIR SINE MIR 29 107 -155 2442 77 0 3 chr3 7666944 7667254 -219857324 - AluY SINE Alu -2 309 1 242 253 24 60 chr3 7667358 7667441 -219857137 - MIR SINE MIR -81 127 48 2130 116 3 16 chr3 7668229 7668539 -219856039 + AluSx SINE Alu 4 309 -3 3547 152 48 2 chr3 7668540 7669146 -219855432 + L1MB3 LINE L1 5550 6183 0 530 241 195 0 chr3 7669201 7669375 -219855203 - MIR SINE MIR -6 256 49 545 268 87 70 chr3 7669651 7669950 -219854628 - MER5C DNA MER1_type 0 324 21 253 348 38 52 chr3 7670142 7670352 -219854226 - L2 LINE L2 -544 2770 2564 248 307 44 18 chr3 7671177 7671291 -219853287 + MER69A DNA AcHobo 1 117 -60 1798 191 68 28 chr3 7671296 7671493 -219853085 - L1MD2 LINE L1 -1 6358 6170 2253 110 3 0 chr3 7671493 7671803 -219852775 - AluSx SINE Alu -1 311 1 1798 191 68 28 chr3 7671803 7672004 -219852574 - L1MD2 LINE L1 -189 6170 5944 314 245 96 11 chr3 7672004 7672098 -219852480 + MER69A DNA AcHobo 76 177 0 2531 57 0 22 chr3 7672380 7672698 -219851880 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 7673087 7673109 -219851469 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 7673144 7673273 -219851305 - MIR SINE MIR -75 133 2 1881 72 103 4 chr3 7673344 7673606 -219850972 + AluSc SINE Alu 5 292 -17 285 217 0 17 chr3 7673960 7674020 -219850558 - MER91 DNA MER1_type -80 60 2 202 296 14 28 chr3 7674645 7674716 -219849862 + MIR SINE MIR 20 89 -119 232 222 123 0 chr3 7674905 7674986 -219849592 + MIR3 SINE MIR 102 192 -16 204 278 46 65 chr3 7675585 7675693 -219848885 - MIR SINE MIR -59 149 69 3562 119 12 2 chr3 7676029 7676535 -219848043 - L1PB3 LINE L1 0 6154 5644 812 84 0 19 chr3 7676575 7676682 -219847896 - FLAM_A SINE Alu -16 126 22 305 265 34 23 chr3 7678433 7678562 -219846016 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 7679012 7679182 -219845396 - MIR SINE MIR -1 261 51 1904 128 16 26 chr3 7679182 7679488 -219845090 - AluSx SINE Alu -9 303 1 201 211 0 0 chr3 7679789 7679841 -219844737 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 254 140 18 chr3 7680478 7680592 -219843986 - MIR3 SINE MIR -80 128 1 1824 185 0 3 chr3 7682259 7682557 -219842021 + AluJo SINE Alu 1 297 -15 582 250 152 10 chr3 7682869 7683073 -219841505 + MIR SINE MIR 16 248 -14 1991 140 13 0 chr3 7683194 7683501 -219841077 - AluSx SINE Alu -1 311 1 240 234 261 0 chr3 7683604 7683715 -219840863 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 7683816 7684054 -219840524 - L2 LINE L2 -825 2489 2232 2320 106 0 3 chr3 7684401 7684703 -219839875 - AluSx SINE Alu -11 301 1 320 316 18 9 chr3 7685199 7685313 -219839265 + L2 LINE L2 3158 3272 0 1903 145 3 3 chr3 7685487 7685769 -219838809 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 7685843 7685953 -219838625 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 7686405 7686543 -219838035 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 7687357 7687650 -219836928 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 7687752 7688051 -219836527 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 7688635 7688765 -219835813 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 7688848 7689005 -219835573 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 7689163 7689670 -219834908 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 7689688 7689903 -219834675 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 7690331 7690617 -219833961 - AluSx SINE Alu -18 294 1 1697 195 7 0 chr3 7691365 7691657 -219832921 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr3 7691658 7691682 -219832896 + (CA)n Simple_repeat Simple_repeat 2 25 0 680 149 79 0 chr3 7691778 7691892 -219832686 - FLAM_C SINE Alu -19 124 2 201 386 30 0 chr3 7692006 7692107 -219832471 + L2 LINE L2 3169 3272 0 257 267 150 0 chr3 7692172 7692292 -219832286 + L1ME LINE L1 5705 5842 -279 2520 87 0 0 chr3 7692354 7692663 -219831915 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 7692824 7692846 -219831732 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 7693578 7693608 -219830970 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 7694624 7694949 -219829629 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 7694985 7695148 -219829430 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 7695548 7695849 -219828729 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 7696976 7697072 -219827506 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 7697451 7697747 -219826831 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 7698373 7698670 -219825908 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 7698670 7698863 -219825715 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 7699114 7699232 -219825346 + L2 LINE L2 3170 3303 -10 2349 98 7 0 chr3 7699502 7699809 -219824769 + AluSp SINE Alu 1 309 -4 537 188 240 19 chr3 7700069 7700223 -219824355 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 7700401 7700434 -219824144 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 7700472 7700615 -219823963 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 7700765 7700832 -219823746 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 7701101 7701406 -219823172 - AluSg SINE Alu -5 305 1 449 222 104 22 chr3 7704154 7704289 -219820289 - L2 LINE L2 -5 3267 3122 2119 90 54 0 chr3 7704656 7704934 -219819644 + AluSq SINE Alu 1 293 -20 24 96 0 0 chr3 7706678 7706751 -219817827 + AT_rich Low_complexity Low_complexity 1 73 0 521 275 6 25 chr3 7707486 7707646 -219816932 - MIR SINE MIR -72 190 34 322 295 25 0 chr3 7708241 7708363 -219816215 + L2 LINE L2 2199 2323 -991 872 225 69 23 chr3 7708373 7708635 -219815943 - L1MB4 LINE L1 0 6180 5907 275 250 70 20 chr3 7709800 7709900 -219814678 + MIR SINE MIR 81 185 -77 2058 140 7 0 chr3 7709909 7710209 -219814369 + AluSx SINE Alu 1 302 -10 226 246 33 0 chr3 7710742 7710803 -219813775 - MER5B DNA MER1_type 0 178 116 709 191 112 27 chr3 7710840 7711028 -219813550 + MER20 DNA MER1_type 16 219 0 1071 178 28 0 chr3 7711152 7711332 -219813246 - MER5A DNA MER1_type -2 187 3 1602 112 31 5 chr3 7712071 7712295 -219812283 + MER30 DNA MER1_type 1 230 0 566 255 28 0 chr3 7712313 7712458 -219812120 - MIR SINE MIR -87 175 27 2379 99 3 0 chr3 7712460 7712762 -219811816 - AluSq SINE Alu -10 303 1 608 248 62 6 chr3 7712882 7713043 -219811535 + Charlie8 DNA MER1_type 11 180 -2237 538 208 53 52 chr3 7713044 7713220 -219811358 + MSTC LTR MaLR 1 180 -185 274 126 24 0 chr3 7713219 7713280 -219811298 + MSTB2 LTR MaLR 308 431 -26 * 235 280 156 53 chr3 7713445 7713670 -219810908 + L2 LINE L2 2916 3163 -150 538 252 63 15 chr3 7713691 7713861 -219810717 + MIR SINE MIR 13 196 -66 2242 120 0 0 chr3 7713861 7714162 -219810416 + AluSx SINE Alu 1 301 -11 538 252 63 15 chr3 7714162 7714197 -219810381 + MIR SINE MIR 196 228 -34 278 149 21 0 chr3 7714234 7714281 -219810297 + Charlie8 DNA MER1_type 2364 2411 -6 357 62 0 0 chr3 7714677 7714725 -219809853 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr3 7714724 7714750 -219809828 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1203 222 108 7 chr3 7714760 7715057 -219809521 + MER2 DNA MER2_type 6 332 -13 25810 64 4 9 chr3 7715287 7718608 -219805970 - L1P LINE L1 -2831 3315 11 616 239 119 26 chr3 7718627 7718965 -219805613 + MLT1G LTR MaLR 153 588 -2 1791 152 20 10 chr3 7721266 7721562 -219803016 - AluJo SINE Alu -13 299 1 265 185 174 0 chr3 7721576 7721668 -219802910 - MER113 DNA MER1_type? -410 111 4 257 347 41 0 chr3 7721671 7721792 -219802786 - MIR3 SINE MIR -52 156 31 2255 91 3 3 chr3 7722299 7722586 -219801992 - AluSp SINE Alu -15 298 12 201 261 54 43 chr3 7724911 7725003 -219799575 + MIR SINE MIR 103 195 -67 1837 150 0 43 chr3 7726435 7726761 -219797817 - AluJb SINE Alu 0 312 1 1840 147 14 7 chr3 7727386 7727672 -219796906 + AluJo SINE Alu 1 288 -24 11323 113 19 10 chr3 7827864 7830647 -219693931 + L1PA7 LINE L1 54 2871 -3590 * 16093 95 33 7 chr3 7830643 7833624 -219690954 + L1PA7 LINE L1 3162 6223 -246 1093 214 173 55 chr3 7834314 7834613 -219689965 - MER77 LTR ERV1 -4 601 339 1493 201 116 14 chr3 7834613 7835035 -219689543 - MLT1C LTR MaLR 0 467 3 1093 214 173 55 chr3 7835035 7835244 -219689334 - MER77 LTR ERV1 -266 339 55 1359 193 12 105 chr3 7836198 7836597 -219687981 - MLT1A1 LTR MaLR -3 362 1 499 138 0 12 chr3 7836942 7837022 -219687556 + AluSq SINE Alu 142 220 -93 598 110 28 9 chr3 7837060 7837169 -219687409 + A-rich Low_complexity Low_complexity 4 114 0 492 314 0 0 chr3 7837177 7837298 -219687280 + L2 LINE L2 3150 3270 -2 527 146 21 0 chr3 7837340 7837436 -219687142 + L1MD3 LINE L1 7889 7986 -9 317 271 153 0 chr3 7838434 7838552 -219686026 - MIR SINE MIR -70 192 57 313 269 10 0 chr3 7838986 7839090 -219685488 + L1MD1 LINE L1 6128 6232 -10 183 290 65 0 chr3 7839146 7839208 -219685370 - MIR SINE MIR -78 184 119 586 199 61 15 chr3 7839222 7839353 -219685225 + MIR SINE MIR 12 148 -114 279 284 45 11 chr3 7839426 7839514 -219685064 - MIR SINE MIR -170 92 2 460 220 83 0 chr3 7839623 7839732 -219684846 - MLT1C LTR MaLR 0 467 350 1991 142 9 19 chr3 7839732 7840048 -219684530 + AluSq SINE Alu 1 313 0 388 296 79 4 chr3 7840201 7840649 -219683929 - L1ME4a LINE L1 -32 6089 5572 196 277 0 0 chr3 7840727 7840774 -219683804 - L2 LINE L2 0 3313 3267 590 237 194 0 chr3 7841142 7841328 -219683250 + MIR SINE MIR 11 232 -30 411 281 72 72 chr3 7842632 7842853 -219681725 + MIR SINE MIR 8 228 -34 452 232 18 89 chr3 7843035 7843185 -219681393 - MIR SINE MIR -62 146 22 1980 114 10 7 chr3 7843185 7843475 -219681103 - AluSp SINE Alu -22 291 1 452 232 18 89 chr3 7843475 7843496 -219681082 - MIR SINE MIR -186 22 1 1998 186 3 6 chr3 7844311 7844677 -219679901 - MLT1A1 LTR MaLR 0 365 1 2034 141 0 0 chr3 7844761 7845052 -219679526 - AluSx SINE Alu -19 293 3 802 232 44 6 chr3 7845058 7845239 -219679339 + MER5A DNA MER1_type 2 189 0 325 188 128 77 chr3 7845676 7845793 -219678785 + MIR3 SINE MIR 32 154 -54 2044 113 33 7 chr3 7846899 7847201 -219677377 + AluSg SINE Alu 1 310 0 266 114 0 125 chr3 7847517 7847605 -219676973 + MER113 DNA MER1_type? 59 135 -386 364 325 26 26 chr3 7847885 7848079 -219676499 + MLT1J2 LTR MaLR 247 440 -10 1546 156 9 98 chr3 7848096 7848423 -219676155 + AluJo SINE Alu 5 302 -10 294 320 68 0 chr3 7849256 7849359 -219675219 + L2 LINE L2 3197 3306 -7 542 319 29 10 chr3 7850226 7850433 -219674145 + MIR SINE MIR 7 217 -45 966 194 63 93 chr3 7850439 7850707 -219673871 + AluSg SINE Alu 5 264 -46 542 133 48 0 chr3 7851545 7851650 -219672928 + L1 LINE L1 4727 4836 -1310 181 338 0 14 chr3 7852462 7852533 -219672045 + L2 LINE L2 2847 2916 -397 196 263 0 75 chr3 7852998 7853078 -219671500 + L2 LINE L2 2922 2995 -277 1506 211 42 70 chr3 7853096 7853637 -219670941 + L1M4 LINE L1 14 539 -6003 401 258 39 39 chr3 7853796 7853978 -219670600 - L1ME3A LINE L1 -10 6160 5979 500 287 43 38 chr3 7854001 7854210 -219670368 - L1ME3A LINE L1 -291 5879 5667 1356 205 72 5 chr3 7854229 7854260 -219670318 - MLT2D LTR ERVL -7 457 430 237 33 0 0 chr3 7854260 7854290 -219670288 + (TG)n Simple_repeat Simple_repeat 2 31 0 1356 205 72 5 chr3 7854290 7854627 -219669951 - MLT2D LTR ERVL -34 430 1 1587 191 125 33 chr3 7854740 7854796 -219669782 - MER74A LTR ERVL -30 528 479 2052 125 0 7 chr3 7854796 7855092 -219669486 + AluSx SINE Alu 1 294 -18 1587 191 125 33 chr3 7855092 7855484 -219669094 - MER74A LTR ERVL -79 479 39 1685 133 85 14 chr3 7855484 7855838 -219668740 + L1PA11 LINE L1 5793 6171 -3 180 243 184 29 chr3 7856977 7857080 -219667498 - MIR SINE MIR -73 135 17 1366 230 21 7 chr3 7857196 7857483 -219667095 + AluJo SINE Alu 1 291 -21 420 257 10 20 chr3 7857504 7857605 -219666973 + L2 LINE L2 3195 3294 -19 440 235 98 20 chr3 7857616 7857697 -219666881 - MIR SINE MIR -13 249 176 1410 190 67 32 chr3 7857697 7858071 -219666507 + MLT1B LTR MaLR 4 390 0 440 235 98 20 chr3 7858071 7858142 -219666436 - MIR SINE MIR -86 176 85 1583 121 21 31 chr3 7858241 7858531 -219666047 + L1PA15-16 LINE L1 2641 2927 -3922 933 116 0 34 chr3 7858531 7858678 -219665900 + AluSq SINE Alu 107 248 -65 3489 200 48 14 chr3 7858779 7859608 -219664970 - L1P LINE L1 -5275 871 15 3352 196 2 32 chr3 7859608 7860449 -219664129 + L1P LINE L1 952 1767 -4379 463 293 131 57 chr3 7861625 7862151 -219662427 + L1M4 LINE L1 2944 3515 -2631 344 351 68 11 chr3 7862179 7862370 -219662208 + L1M4 LINE L1 3637 3838 -2308 329 235 12 0 chr3 7862443 7862524 -219662054 - MER46C DNA MER2_type -1 337 256 17227 85 17 10 chr3 7863450 7865529 -219659049 + L1P LINE L1 1586 3689 -2457 204 40 0 0 chr3 7865529 7865554 -219659024 + (TAA)n Simple_repeat Simple_repeat 3 27 0 17227 85 17 10 chr3 7865554 7866097 -219658481 + L1P LINE L1 3689 4227 -1919 698 126 19 101 chr3 7866208 7866367 -219658211 - MLT1C LTR MaLR -315 152 7 314 312 176 16 chr3 7867496 7867621 -219656957 + MIR SINE MIR 2 146 -116 2166 132 3 0 chr3 7867627 7867931 -219656647 + AluSg SINE Alu 1 305 -5 659 256 20 20 chr3 7867934 7868129 -219656449 - MLT1F1 LTR MaLR -370 197 3 2208 75 20 3 chr3 7868935 7869240 -219655338 + AluY SINE Alu 1 310 -1 231 341 71 24 chr3 7869249 7869375 -219655203 + MIR SINE MIR 83 214 -48 467 175 0 0 chr3 7869546 7869626 -219654952 + MER5A DNA MER1_type 30 109 -80 227 228 248 20 chr3 7869552 7869653 -219654925 - MER5A DNA MER1_type -24 165 42 * 266 272 26 35 chr3 7870011 7870125 -219654453 + MER5A DNA MER1_type 7 119 -70 354 294 85 47 chr3 7870685 7870896 -219653682 - MLT1K LTR MaLR -346 242 24 1006 248 17 0 chr3 7870915 7871149 -219653429 - MER8 DNA MER2_type -1 238 1 923 261 79 32 chr3 7872289 7872736 -219651842 + L1MC/D LINE L1 4861 5363 -965 1965 102 6 58 chr3 7872736 7873049 -219651529 - AluSc SINE Alu -12 297 1 923 261 79 32 chr3 7873049 7873270 -219651308 + L1MC/D LINE L1 5363 5572 -756 393 115 37 0 chr3 7873265 7873343 -219651235 + L1MD3 LINE L1 6244 7984 -11 * 205 302 137 29 chr3 7873706 7873845 -219650733 - L3 LINE CR1 -441 1136 983 3454 219 58 41 chr3 7875269 7875394 -219649184 - L1M4c LINE L1 -4666 1980 1859 2080 137 0 0 chr3 7875394 7875678 -219648900 + AluSg SINE Alu 1 284 -26 3454 219 58 41 chr3 7875678 7875877 -219648701 - L1M4c LINE L1 -4787 1859 1665 517 198 0 24 chr3 7875877 7876003 -219648575 - L1PA7 LINE L1 0 6154 6032 3454 219 58 41 chr3 7876003 7877042 -219647536 - L1M4c LINE L1 -4981 1665 644 3846 63 8 0 chr3 7877185 7877677 -219646901 + L1PA6 LINE L1 5656 6151 -3 2244 214 24 75 chr3 7877702 7878010 -219646568 + L1MA10 LINE L1 5653 5975 -359 1965 164 0 7 chr3 7878010 7878315 -219646263 + AluSx SINE Alu 2 304 -8 2244 214 24 75 chr3 7878315 7878721 -219645857 + L1MA10 LINE L1 5975 6330 -4 201 39 0 0 chr3 7879867 7879893 -219644685 + (A)n Simple_repeat Simple_repeat 1 26 0 7203 103 15 15 chr3 7880689 7880755 -219643823 + L1P LINE L1 1771 1836 -4310 2060 150 0 0 chr3 7880755 7881048 -219643530 - AluSg SINE Alu -17 293 1 7203 103 15 15 chr3 7881048 7882042 -219642536 + L1P LINE L1 1835 2831 -3315 180 360 84 56 chr3 7882490 7882776 -219641802 - L2 LINE L2 -17 3255 2962 318 236 0 38 chr3 7883333 7883439 -219641139 - MER117 DNA MER1_type -26 171 70 342 270 102 15 chr3 7883730 7883867 -219640711 + MIR SINE MIR 1 149 -113 214 298 43 0 chr3 7883936 7883983 -219640595 - L2 LINE L2 -86 3186 3138 1684 149 79 6 chr3 7885925 7886240 -219638338 + L1MB8 LINE L1 5839 6176 -2 1858 91 6 91 chr3 7886581 7886911 -219637667 + AluSc SINE Alu 1 302 -7 700 209 76 6 chr3 7886945 7887103 -219637475 + MER3 DNA MER1_type 41 209 0 550 245 66 7 chr3 7887111 7887262 -219637316 + MIR SINE MIR 67 226 -36 199 369 56 20 chr3 7887294 7887489 -219637089 + L2 LINE L2 2546 2747 -567 950 233 25 82 chr3 7887493 7887811 -219636767 + AluJb SINE Alu 1 300 -2 207 269 0 15 chr3 7888720 7888787 -219635791 + CT-rich Low_complexity Low_complexity 3 68 0 403 272 29 0 chr3 7889180 7889283 -219635295 + L2 LINE L2 3153 3258 -14 1538 112 5 0 chr3 7891434 7891640 -219632938 - AluSg/x SINE Alu -38 272 66 293 303 13 0 chr3 7891801 7891877 -219632701 + L2 LINE L2 3192 3268 -4 239 319 96 0 chr3 7891978 7892072 -219632506 - L3 LINE CR1 -393 1184 1082 231 227 252 34 chr3 7893504 7893623 -219630955 + MER5A DNA MER1_type 30 185 -4 578 223 141 0 chr3 7893639 7893799 -219630779 - MER5A DNA MER1_type 0 189 4 238 207 132 0 chr3 7894049 7894170 -219630408 + AluSg SINE Alu 2 138 -162 520 201 60 148 chr3 7896340 7896658 -219627920 + MER102a DNA MER1_type 41 330 0 310 380 0 0 chr3 7898220 7898357 -219626221 + LTR16A1 LTR ERVL 3 139 -318 3951 200 65 14 chr3 7898907 7900110 -219624468 - L1M4 LINE L1 -641 5533 4275 7128 76 2 7 chr3 7900250 7901634 -219622944 + L1PA6 LINE L1 4777 6153 -1 291 308 88 31 chr3 7902099 7902258 -219622320 - MIR SINE MIR -48 214 47 745 211 13 7 chr3 7902368 7902520 -219622058 + MER58B DNA MER1_type 185 337 -4 1978 140 3 22 chr3 7902754 7903068 -219621510 + AluSx SINE Alu 1 308 -4 313 305 85 28 chr3 7904137 7904314 -219620264 + MER5A DNA MER1_type 1 187 -2 196 265 44 44 chr3 7905056 7905124 -219619454 - L2 LINE L2 -4 3268 3201 244 303 25 42 chr3 7905729 7905848 -219618730 - MIR3 SINE MIR -3 205 89 284 340 14 0 chr3 7905858 7905999 -219618579 + MER117 DNA MER1_type 18 160 -37 346 381 0 8 chr3 7906123 7906249 -219618329 - MIR SINE MIR -133 129 5 579 96 12 0 chr3 7907227 7907310 -219617268 + MSTB1 LTR MaLR 349 432 0 230 239 0 0 chr3 7907855 7907901 -219616677 + L2 LINE L2 2706 2751 -563 576 322 57 13 chr3 7907910 7908140 -219616438 - L2 LINE L2 -352 2962 2723 6542 75 7 2 chr3 7908375 7909199 -219615379 + L1PA7 LINE L1 5327 6154 0 584 239 8 8 chr3 7909857 7909991 -219614587 + MER20 DNA MER1_type 86 219 0 267 157 20 0 chr3 7910096 7910147 -219614431 - L2 LINE L2 0 3272 3221 1122 189 33 54 chr3 7912407 7912741 -219611837 - MER44D DNA MER2_type -12 597 1 335 227 0 0 chr3 7912742 7912808 -219611770 - MER91B DNA MER1_type -89 101 36 207 350 72 0 chr3 7913261 7913358 -219611220 + L3 LINE CR1 401 504 -1073 271 317 112 0 chr3 7914248 7914409 -219610169 - L2 LINE L2 0 3313 3135 1194 161 9 19 chr3 7914531 7914742 -219609836 + L1MB3 LINE L1 5975 6183 0 247 273 45 23 chr3 7915395 7915527 -219609051 + MER4A LTR ERV1 116 250 -414 22 0 0 0 chr3 7915621 7915643 -219608935 + AT_rich Low_complexity Low_complexity 1 22 0 423 171 225 39 chr3 7915722 7915851 -219608727 + MER4C LTR ERV1 294 446 -19 594 289 138 23 chr3 7915875 7916179 -219608399 - L2 LINE L2 -47 3266 2928 183 200 40 107 chr3 7916427 7916502 -219608076 - L3 LINE CR1 -832 745 676 317 216 75 30 chr3 7916957 7917091 -219607487 + LTR16C LTR ERVL 352 491 0 4979 181 49 26 chr3 7918618 7919905 -219604673 + L1MA9 LINE L1 4848 6311 -1 201 74 0 0 chr3 7920086 7920113 -219604465 + (A)n Simple_repeat Simple_repeat 1 27 0 289 247 81 86 chr3 7921783 7921969 -219602609 + L1ME LINE L1 5634 5818 -303 382 288 18 9 chr3 7922216 7922327 -219602251 - MIR SINE MIR -90 172 61 190 348 158 19 chr3 7922367 7922525 -219602053 + MIR3 SINE MIR 16 195 -13 221 398 0 0 chr3 7923223 7923311 -219601267 - MIR SINE MIR -55 153 66 217 334 88 0 chr3 7923986 7924122 -219600456 - MIR SINE MIR -63 145 45 381 253 22 0 chr3 7924185 7924276 -219600302 - MER5A DNA MER1_type -88 101 9 457 308 14 20 chr3 7925057 7925203 -219599375 + MIR3 SINE MIR 40 184 -24 342 270 41 0 chr3 7926060 7926186 -219598392 + MLT1J2 LTR MaLR 65 233 -278 320 275 102 23 chr3 7926864 7927070 -219597508 + MIR SINE MIR 9 225 -37 260 253 48 48 chr3 7927139 7927222 -219597356 + L2 LINE L2 3231 3313 0 843 271 76 15 chr3 7927313 7927739 -219596839 - MARNA DNA Mariner -33 553 70 328 264 174 0 chr3 7928277 7928398 -219596180 - MIR SINE MIR -62 200 59 653 345 47 14 chr3 7931081 7931377 -219593201 + L2 LINE L2 2654 2959 -355 1918 139 34 28 chr3 7932072 7932424 -219592154 - MSTB1 LTR MaLR 0 432 79 364 293 91 54 chr3 7932730 7932972 -219591606 + L1ME4a LINE L1 5778 6028 -93 1525 181 0 40 chr3 7933038 7933315 -219591263 - AluJo SINE Alu -17 295 30 1202 94 0 50 chr3 7934277 7934457 -219590121 + AluSq SINE Alu 143 313 0 388 296 79 4 chr3 7934607 7935055 -219589523 - L1ME4a LINE L1 -32 6089 5572 196 277 0 0 chr3 7935133 7935180 -219589398 - L2 LINE L2 0 3313 3267 590 237 194 0 chr3 7935548 7935734 -219588844 + MIR SINE MIR 11 232 -30 485 278 17 56 chr3 7936371 7936551 -219588027 - MER5B DNA MER1_type -2 176 4 350 258 0 22 chr3 7936551 7936638 -219587940 - MER5B DNA MER1_type -93 85 1 794 187 66 28 chr3 7937288 7937470 -219587108 - MER5A DNA MER1_type 0 189 1 972 245 44 24 chr3 7938303 7938601 -219585977 + LTR40b LTR ERVL 1 304 -158 2081 123 20 0 chr3 7938614 7938914 -219585664 + AluSx SINE Alu 1 306 -6 339 159 16 0 chr3 7938917 7938980 -219585598 + LTR40b LTR ERVL 394 457 -5 261 281 148 39 chr3 7939122 7939250 -219585328 + L2 LINE L2 3171 3312 -1 872 274 109 35 chr3 7939277 7939682 -219584896 - LTR16A LTR ERVL 0 450 16 2000 186 3 6 chr3 7939748 7940114 -219584464 - MLT1A1 LTR MaLR 0 365 1 2002 139 0 0 chr3 7940198 7940479 -219584099 - AluSx SINE Alu -19 293 13 3732 155 22 24 chr3 7940619 7941342 -219583236 + L1MA10 LINE L1 5602 6323 -11 410 353 73 71 chr3 7941419 7941805 -219582773 + L2 LINE L2 2838 3227 -45 1335 226 57 28 chr3 7941805 7942229 -219582349 - MER63B DNA MER1_type 0 436 1 410 353 73 71 chr3 7942229 7942267 -219582311 + L2 LINE L2 3227 3263 -9 2180 126 10 0 chr3 7943167 7943476 -219581102 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 7943626 7943647 -219580931 + AT_rich Low_complexity Low_complexity 1 21 0 217 222 111 0 chr3 7943893 7943938 -219580640 - L2 LINE L2 -3 3269 3220 470 298 80 48 chr3 7944168 7944480 -219580098 - MLT1K LTR MaLR -126 462 141 186 344 16 0 chr3 7944587 7944651 -219579927 - L2 LINE L2 -237 3035 2971 475 280 126 6 chr3 7946909 7947084 -219577494 + L2 LINE L2 3112 3307 -6 241 347 74 34 chr3 7947110 7947286 -219577292 - MIR SINE MIR -20 242 60 455 337 63 0 chr3 7947489 7947664 -219576914 - MIR SINE MIR -41 221 36 467 360 35 19 chr3 7947742 7948003 -219576575 + L3 LINE CR1 967 1231 -346 683 298 37 16 chr3 7948098 7948343 -219576235 + MIR SINE MIR 13 262 0 190 292 188 21 chr3 7948543 7948639 -219575939 - MIR SINE MIR -67 141 30 990 316 104 23 chr3 7948826 7949549 -219575029 + L2 LINE L2 2499 3308 -5 2380 88 0 28 chr3 7950352 7950670 -219573908 + AluY SINE Alu 1 309 -2 22 56 0 0 chr3 7950935 7950971 -219573607 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7950981 7951004 -219573574 + AT_rich Low_complexity Low_complexity 1 23 0 270 231 0 0 chr3 7951822 7951887 -219572691 + (TA)n Simple_repeat Simple_repeat 1 65 0 190 355 0 0 chr3 7951887 7951949 -219572629 + L2 LINE L2 2920 2981 -291 329 223 117 21 chr3 7951996 7952090 -219572488 + MER5A DNA MER1_type 31 133 -56 258 213 0 0 chr3 7952443 7952490 -219572088 + L2 LINE L2 3257 3303 -10 2177 146 8 11 chr3 7952594 7952956 -219571622 + MLT1A1 LTR MaLR 5 365 0 398 286 0 0 chr3 7953020 7953118 -219571460 + L2 LINE L2 3173 3270 -2 323 283 43 11 chr3 7953664 7953756 -219570822 + MIR SINE MIR 118 212 -50 24 0 0 0 chr3 7955291 7955315 -219569263 + AT_rich Low_complexity Low_complexity 1 24 0 266 244 26 0 chr3 7955445 7955523 -219569055 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 777 211 93 45 chr3 7956026 7956272 -219568306 + MIR SINE MIR 5 262 0 823 195 23 45 chr3 7957662 7957883 -219566695 + MER20 DNA MER1_type 2 217 -2 249 258 305 0 chr3 7958696 7958824 -219565754 - MIR SINE MIR -45 217 51 2582 238 30 20 chr3 7959020 7959664 -219564914 + MER82 DNA MER2_type 1 650 -3 687 178 103 23 chr3 7960067 7960241 -219564337 + MER5A DNA MER1_type 2 189 0 3882 168 14 3 chr3 7960773 7961469 -219563109 + MER50 LTR ERV1 7 710 -24 210 294 147 29 chr3 7961477 7961579 -219562999 - L2 LINE L2 -40 3273 3160 283 319 120 15 chr3 7962961 7963209 -219561369 - L3 LINE CR1 -15 1562 1238 2059 131 0 7 chr3 7963569 7963866 -219560712 - AluSx SINE Alu -17 295 1 991 204 125 14 chr3 7964222 7964501 -219560077 - LTR2 LTR ERV1 0 449 140 244 298 145 8 chr3 7964532 7964663 -219559915 - LTR2 LTR ERV1 -298 151 3 387 309 19 47 chr3 7964702 7964958 -219559620 - L2 LINE L2 -1037 2277 2029 280 258 34 34 chr3 7965049 7965138 -219559440 - L2 LINE L2 -1359 1955 1867 304 330 73 31 chr3 7965615 7965653 -219558925 + MIR SINE MIR 48 83 -179 2178 154 43 25 chr3 7965653 7966095 -219558483 - LTR7 LTR ERV1 0 450 1 304 330 73 31 chr3 7966095 7966247 -219558331 + MIR SINE MIR 83 246 -16 4952 214 18 33 chr3 7966971 7968998 -219555580 + L1PA8A LINE L1 3 2163 -4298 940 117 0 6 chr3 7969003 7969166 -219555412 + L1PA8A LINE L1 3634 3795 -2666 12574 110 5 7 chr3 7969213 7970012 -219554566 + L1PA8A LINE L1 3756 4555 -1891 2034 143 26 10 chr3 7970012 7970319 -219554259 + AluSx SINE Alu 1 312 0 12574 110 5 7 chr3 7970319 7972200 -219552378 + L1PA8A LINE L1 4555 6445 -1 1415 183 54 0 chr3 7972214 7972509 -219552069 + L1M2 LINE L1 5476 5786 -526 8343 54 7 0 chr3 7972694 7974526 -219550052 - L1PA5 LINE L1 -3 6151 4304 5958 90 2 15 chr3 7974791 7975677 -219548901 + L1PA10 LINE L1 5291 6165 -3 1494 174 14 88 chr3 7975761 7976185 -219548393 + MLT2D LTR ERVL 5 377 -20 256 259 0 0 chr3 7976192 7976250 -219548328 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 258 100 50 0 chr3 7976254 7976294 -219548284 + MLT2D LTR ERVL 367 408 -6 649 278 40 48 chr3 7976299 7976547 -219548031 - MIR SINE MIR -10 252 7 290 146 0 18 chr3 7977123 7977178 -219547400 - L1ME LINE L1 -476 5645 5592 381 238 42 35 chr3 7977295 7977554 -219547024 + MLT1I LTR MaLR 95 399 -10 956 287 89 0 chr3 7977789 7978204 -219546374 - L1MC4a LINE L1 -1862 5946 5495 508 272 101 68 chr3 7978221 7978698 -219545880 - L1MC4a LINE L1 -1684 4462 3947 8036 214 17 7 chr3 7979079 7981031 -219543547 - L1P LINE L1 -1361 4785 2814 7444 32 16 1 chr3 7981042 7984421 -219540157 - L1PA4 LINE L1 -6 6149 2719 2536 37 0 0 chr3 7984419 7984741 -219539837 - L1P LINE L1 -1001 5145 4824 * 7811 102 29 6 chr3 7984745 7986728 -219537850 - L1PA7 LINE L1 -3 6466 4451 10397 98 7 0 chr3 7986731 7988226 -219536352 - L1PA7 LINE L1 -4812 1649 145 3342 203 20 12 chr3 7988224 7988972 -219535606 - L1PA13 LINE L1 -4803 1984 1231 * 227 321 9 0 chr3 7989010 7989119 -219535459 - L1PA12 LINE L1 -5279 2302 2193 227 335 29 61 chr3 7989965 7990210 -219534368 - L1PA12 LINE L1 -7202 379 143 724 286 152 47 chr3 7990241 7990927 -219533651 - L1M4 LINE L1 -3113 3033 2276 2329 104 3 0 chr3 7990928 7991226 -219533352 - AluSx SINE Alu -13 299 1 214 264 28 14 chr3 7991371 7991443 -219533135 + (CTA)n Simple_repeat Simple_repeat 2 74 0 341 366 42 0 chr3 7992935 7993077 -219531501 + MIR SINE MIR 86 233 -29 512 260 0 0 chr3 7993092 7993215 -219531363 + Tigger3(Golem) DNA MER2_type 3 125 -2904 288 103 39 39 chr3 7993212 7993290 -219531288 + Tigger3(Golem) DNA MER2_type 2483 2560 -469 * 711 176 11 102 chr3 7993297 7993484 -219531094 + FRAM SINE Alu 2 171 -5 2784 131 7 13 chr3 7993484 7993935 -219530643 + Tigger3(Golem) DNA MER2_type 2581 3028 -1 27 49 0 0 chr3 7994055 7994096 -219530482 + AT_rich Low_complexity Low_complexity 1 41 0 540 45 0 0 chr3 7994840 7994907 -219529671 + (TA)n Simple_repeat Simple_repeat 2 68 0 696 184 0 17 chr3 7994955 7995180 -219529398 - AluJb SINE Alu -1 311 1 2089 147 81 18 chr3 7995333 7995728 -219528850 - MSTA LTR MaLR -4 424 5 231 294 172 12 chr3 7995841 7996004 -219528574 - MIR SINE MIR -11 251 63 2192 126 3 0 chr3 7996087 7996388 -219528190 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr3 7996648 7996676 -219527902 + AT_rich Low_complexity Low_complexity 1 28 0 568 148 56 0 chr3 7996812 7996920 -219527658 - L1MA9 LINE L1 -4 6308 6195 2050 178 76 4 chr3 7996922 7997394 -219527184 - L1MA8 LINE L1 -5 6286 5781 348 262 0 0 chr3 7997394 7997497 -219527081 + (TA)n Simple_repeat Simple_repeat 2 104 0 226 211 0 0 chr3 7997498 7997550 -219527028 - L1MC4 LINE L1 -1339 6703 6652 286 342 0 0 chr3 7997550 7997629 -219526949 + (CATA)n Simple_repeat Simple_repeat 2 80 0 359 315 0 11 chr3 7997634 7997815 -219526763 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 591 293 0 0 chr3 7997831 7998159 -219526419 + (TA)n Simple_repeat Simple_repeat 1 328 0 183 366 0 0 chr3 7998185 7998360 -219526218 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 * 279 161 0 0 chr3 7998333 7998389 -219526189 + (CA)n Simple_repeat Simple_repeat 2 57 0 556 159 90 141 chr3 7998391 7998647 -219525931 - L1MA8 LINE L1 -513 5778 5543 10191 225 59 66 chr3 7998789 8003127 -219521451 - L1M2 LINE L1 -602 6710 2343 2343 164 50 7 chr3 8003127 8003565 -219521013 - MSTB2 LTR MaLR 0 457 1 960 203 31 22 chr3 8003565 8003792 -219520786 - MER46A DNA MER2_type -7 229 1 10191 225 59 66 chr3 8003792 8005100 -219519478 - L1M2 LINE L1 -4967 2345 1193 266 269 92 43 chr3 8005648 8005789 -219518789 - L2 LINE L2 -1 3312 3165 257 233 79 55 chr3 8006239 8006441 -219518137 - LTR33 LTR ERVL -16 505 299 292 303 42 7 chr3 8006552 8006694 -219517884 - LTR33 LTR ERVL -366 155 9 593 129 0 0 chr3 8006869 8006954 -219517624 - FLAM SINE Alu -19 124 40 259 225 0 38 chr3 8007060 8007140 -219517438 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 801 258 45 1 chr3 8009477 8009684 -219514894 - MIR SINE MIR -47 215 3 848 181 117 0 chr3 8010160 8010348 -219514230 - MER20 DNA MER1_type -2 217 8 264 200 0 0 chr3 8010671 8010756 -219513822 + CT-rich Low_complexity Low_complexity 1 85 0 3902 118 3 0 chr3 8011504 8012091 -219512487 + L1PA13 LINE L1 5562 6150 -13 1320 170 64 70 chr3 8012237 8012596 -219511982 + MLT1A1 LTR MaLR 1 357 -8 484 321 51 10 chr3 8012613 8012906 -219511672 + MLT1K LTR MaLR 262 566 -22 493 262 41 21 chr3 8013040 8013185 -219511393 + MIR SINE MIR 41 188 -74 340 293 118 7 chr3 8013366 8013537 -219511041 - MIR SINE MIR -62 146 1 187 246 35 35 chr3 8015502 8015559 -219509019 + MIR SINE MIR 96 152 -56 364 291 87 76 chr3 8015848 8016205 -219508373 - MLT1K LTR MaLR -87 501 141 192 40 0 0 chr3 8017435 8017460 -219507118 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 775 155 9 0 chr3 8017461 8017577 -219507001 - AluJb SINE Alu -193 119 3 782 226 59 44 chr3 8017691 8017895 -219506683 + MER63A DNA MER1_type 4 210 0 896 233 77 85 chr3 8018065 8018627 -219505951 - L1ME3A LINE L1 -5 6165 5609 297 244 111 84 chr3 8019226 8019451 -219505127 - L2 LINE L2 -218 3054 2824 934 187 16 5 chr3 8019929 8020116 -219504462 - MER5A DNA MER1_type 0 189 1 838 255 25 103 chr3 8020383 8020779 -219503799 + MLT1A1 LTR MaLR 1 365 0 565 231 28 66 chr3 8021314 8021354 -219503224 + MER5B DNA MER1_type 1 41 -137 2205 133 0 0 chr3 8021354 8021663 -219502915 + AluSg SINE Alu 1 309 -1 565 231 28 66 chr3 8021663 8021804 -219502774 + MER5B DNA MER1_type 41 175 -3 984 180 16 0 chr3 8021813 8021996 -219502582 + MER5A DNA MER1_type 1 186 -3 374 357 16 11 chr3 8022010 8022195 -219502383 - MER5A DNA MER1_type -3 186 1 257 338 101 36 chr3 8022231 8022370 -219502208 - MER5B DNA MER1_type -16 162 15 477 273 45 45 chr3 8023026 8023180 -219501398 - MIR3 SINE MIR -39 169 16 2113 236 50 12 chr3 8024117 8024635 -219499943 + MLT1F LTR MaLR 5 542 0 327 289 0 0 chr3 8024645 8024735 -219499843 + L2 LINE L2 3224 3313 0 740 267 61 17 chr3 8025026 8025468 -219499110 - LTR33 LTR ERVL -25 496 3 414 138 0 0 chr3 8025750 8025815 -219498763 + AluSc SINE Alu 236 300 -9 1293 165 117 26 chr3 8025819 8026128 -219498450 - THE1C LTR MaLR -38 337 1 538 320 46 25 chr3 8026287 8026484 -219498094 - L3 LINE CR1 -8 1569 1369 968 226 22 2 chr3 8026508 8026781 -219497797 - L1ME1 LINE L1 -177 5989 5712 271 246 67 15 chr3 8027220 8027354 -219497224 - L1MEd LINE L1 -5973 146 6 181 284 40 27 chr3 8028617 8028691 -219495887 - MIR3 SINE MIR -47 161 87 222 255 0 0 chr3 8028835 8028886 -219495692 - MIR SINE MIR -108 154 104 495 264 9 88 chr3 8028991 8029207 -219495371 - MIR SINE MIR -44 218 20 2432 198 49 12 chr3 8029220 8029811 -219494767 - MER90 LTR ERV1 -1 613 1 249 311 106 12 chr3 8029836 8029997 -219494581 - L2 LINE L2 -618 2696 2521 379 283 122 24 chr3 8031846 8032051 -219492527 - LTR16A LTR ERVL -6 444 220 848 237 45 0 chr3 8032507 8032705 -219491873 - MIR SINE MIR -40 222 16 685 278 34 1 chr3 8032733 8032961 -219491617 - MIR SINE MIR -13 249 16 854 136 220 5 chr3 8034462 8034653 -219489925 + MER46A DNA MER2_type 1 232 -4 1911 178 3 45 chr3 8034669 8034808 -219489770 + MLT1A1 LTR MaLR 3 146 -219 2149 26 56 4 chr3 8034808 8035112 -219489466 - AluY SINE Alu 0 318 1 1911 178 3 45 chr3 8035112 8035348 -219489230 + MLT1A1 LTR MaLR 146 363 -2 1826 177 20 3 chr3 8035830 8036135 -219488443 - AluSx SINE Alu -2 310 1 346 157 14 0 chr3 8036357 8036427 -219488151 + MLT2B3 LTR ERVL 1 71 -483 1587 189 129 55 chr3 8036520 8036971 -219487607 + MLT2B3 LTR ERVL 71 554 0 521 296 119 51 chr3 8037228 8037776 -219486802 - MLT1K LTR MaLR 0 588 4 720 284 92 42 chr3 8037990 8038447 -219486131 + LTR33 LTR ERVL 34 513 -8 246 295 52 75 chr3 8039273 8039446 -219485132 + MIR SINE MIR 14 182 -80 1162 204 8 17 chr3 8039561 8039796 -219484782 + MER8 DNA MER2_type 7 239 0 341 202 18 53 chr3 8040199 8040313 -219484265 - MER103 DNA DNA -49 117 8 484 243 110 12 chr3 8040679 8040852 -219483726 - MIR SINE MIR -1 261 72 993 258 57 6 chr3 8040864 8041178 -219483400 + MER58B DNA MER1_type 12 341 0 204 322 56 94 chr3 8042290 8042632 -219481946 - L2 LINE L2 -4 3268 2940 189 258 30 45 chr3 8042938 8043004 -219481574 + MIR SINE MIR 87 151 -57 10906 41 7 0 chr3 8043005 8045109 -219479469 + L1PA5 LINE L1 4027 6147 -7 512 208 16 0 chr3 8045111 8045236 -219479342 + (TATG)n Simple_repeat Simple_repeat 2 128 0 206 245 19 0 chr3 8045352 8045405 -219479173 + L2 LINE L2 3217 3270 -2 539 262 104 0 chr3 8046543 8046707 -219477871 + MIR SINE MIR 44 224 -38 616 241 6 6 chr3 8047899 8048057 -219476521 + MER20 DNA MER1_type 33 190 -29 40651 51 4 3 chr3 8048109 8054255 -219470323 - L1PA5 LINE L1 0 6154 7 756 98 91 0 chr3 8054255 8054387 -219470191 - L1P5 LINE L1 -543 5608 5465 873 133 0 67 chr3 8054387 8054567 -219470011 - MLT1B LTR MaLR -222 168 1 187 342 45 0 chr3 8054821 8054932 -219469646 + MIR SINE MIR 92 207 -55 2321 112 3 0 chr3 8055519 8055824 -219468754 + AluSq SINE Alu 1 306 -7 383 244 133 22 chr3 8056781 8056865 -219467713 - MIR SINE MIR -15 247 149 513 274 71 18 chr3 8056865 8057033 -219467545 - MER5B DNA MER1_type -1 177 1 15142 215 24 6 chr3 8058016 8063369 -219461209 + L1PA15 LINE L1 1357 6816 0 338 159 23 102 chr3 8063715 8063803 -219460775 - MIR3 SINE MIR -14 194 114 301 294 12 0 chr3 8064338 8064423 -219460155 + MIR SINE MIR 68 153 -109 527 374 29 3 chr3 8064772 8065112 -219459466 + L1MEc LINE L1 35 383 -6013 638 259 77 66 chr3 8065144 8065843 -219458735 + L1MEc LINE L1 942 1648 -4748 * 2659 247 84 15 chr3 8065833 8066341 -219458237 + L1MEc LINE L1 2244 2716 -3499 2470 99 42 11 chr3 8066341 8066694 -219457884 - THE1B LTR MaLR 0 364 1 2659 247 84 15 chr3 8066694 8067425 -219457153 + L1MEc LINE L1 2716 3568 -2647 590 125 38 109 chr3 8067435 8067570 -219457008 + L1MD3 LINE L1 7729 7849 -146 2421 97 0 0 chr3 8067570 8067878 -219456700 - AluY SINE Alu -3 308 1 590 125 38 109 chr3 8067878 8067926 -219456652 + L1MD3 LINE L1 7849 7899 -96 754 278 28 5 chr3 8067926 8068138 -219456440 + MER20 DNA MER1_type 1 217 -2 321 125 16 0 chr3 8068175 8068239 -219456339 + L1MD3 LINE L1 7931 7995 0 * 423 268 63 0 chr3 8068233 8068375 -219456203 + L1MEc LINE L1 3563 3713 -2502 241 65 87 0 chr3 8069424 8069470 -219455108 + CT-rich Low_complexity Low_complexity 1 50 0 1619 192 4 0 chr3 8069470 8069746 -219454832 - AluJb SINE Alu -1 311 35 665 247 26 115 chr3 8070696 8071044 -219453534 + MLT1A1 LTR MaLR 5 321 -44 481 236 214 25 chr3 8071103 8071379 -219453199 + MER41B LTR ERV1 100 297 -189 477 254 70 22 chr3 8071465 8071650 -219452928 + MER66A LTR ERV1 285 478 0 376 235 15 30 chr3 8072540 8072672 -219451906 + LTR16A1 LTR ERVL 307 436 -21 1867 146 21 0 chr3 8072821 8073109 -219451469 - AluSq SINE Alu -19 294 1 484 335 60 9 chr3 8073827 8074060 -219450518 - MIR SINE MIR -6 256 12 377 302 71 10 chr3 8074768 8075076 -219449502 + L1ME4a LINE L1 5594 5920 -201 309 261 15 97 chr3 8075093 8075178 -219449400 + L1ME4a LINE L1 5977 6049 -72 1670 149 40 7 chr3 8075178 8075453 -219449125 + AluJb SINE Alu 1 284 -28 309 261 15 97 chr3 8075453 8075501 -219449077 + L1ME4a LINE L1 6049 6099 -22 24 0 0 0 chr3 8075553 8075577 -219449001 + AT_rich Low_complexity Low_complexity 1 24 0 807 201 113 15 chr3 8075613 8075817 -219448761 + MER58A DNA MER1_type 1 224 0 299 237 52 0 chr3 8076139 8076236 -219448342 - HAL1b LINE L1 -502 846 745 573 266 75 90 chr3 8076247 8076623 -219447955 - HAL1b LINE L1 -912 436 67 2363 151 60 2 chr3 8077429 8077832 -219446746 + MSTB LTR MaLR 1 426 0 356 182 55 18 chr3 8078267 8078377 -219446201 - L1MC3 LINE L1 0 7785 7672 1694 218 8 3 chr3 8078385 8078739 -219445839 - MLT1A1 LTR MaLR 0 365 10 2765 217 41 18 chr3 8078748 8079820 -219444758 - L1MC3 LINE L1 -486 7299 6180 1473 183 87 67 chr3 8079827 8080274 -219444304 - MER31B LTR ERV1 -10 456 1 3588 186 25 30 chr3 8080274 8080487 -219444091 - L1MC3 LINE L1 -1611 6174 5962 2149 125 0 3 chr3 8080487 8080782 -219443796 - AluSc SINE Alu -10 299 6 3588 186 25 30 chr3 8080782 8081445 -219443133 - L1MC3 LINE L1 -1823 5962 5302 1197 244 178 11 chr3 8081442 8082070 -219442508 - L1MC3 LINE L1 -1306 4840 4108 * 1753 178 24 3 chr3 8082095 8082427 -219442151 + MLT1A1 LTR MaLR 1 341 -24 1172 214 67 17 chr3 8082442 8082798 -219441780 - L1MC3 LINE L1 -2065 4081 3708 4652 148 35 23 chr3 8082809 8083904 -219440674 - L1MA8 LINE L1 -73 6218 5111 3454 249 51 9 chr3 8083959 8085317 -219439261 - L1MC3 LINE L1 -2466 3680 2266 21 36 0 0 chr3 8085360 8085388 -219439190 + AT_rich Low_complexity Low_complexity 1 28 0 920 287 73 37 chr3 8085573 8085966 -219438612 - L1MC4a LINE L1 -1896 5912 5488 1719 197 7 0 chr3 8085966 8086266 -219438312 + AluJo SINE Alu 1 302 -10 920 287 73 37 chr3 8086266 8086472 -219438106 - L1MC4a LINE L1 -2320 5488 5291 527 327 78 27 chr3 8086496 8086943 -219437635 - L1MC4a LINE L1 -892 5254 4785 28 86 0 0 chr3 8086952 8087022 -219437556 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr3 8089922 8089951 -219434627 + AT_rich Low_complexity Low_complexity 1 29 0 185 263 0 0 chr3 8090228 8090266 -219434312 + MIR SINE MIR 113 150 -58 3059 206 73 16 chr3 8090781 8092418 -219432160 - L1PBa LINE L1 -4875 1988 115 199 350 52 0 chr3 8092462 8092559 -219432019 - MIR3 SINE MIR -9 199 98 370 275 17 40 chr3 8093220 8093396 -219431182 + MIR SINE MIR 50 220 -42 189 147 0 0 chr3 8093642 8093676 -219430902 + (TC)n Simple_repeat Simple_repeat 1 34 0 1699 211 108 0 chr3 8093959 8094357 -219430221 + MER31B LTR ERV1 4 444 -22 1190 192 20 119 chr3 8094375 8094770 -219429808 - MLT1A1 LTR MaLR -2 363 8 2369 192 58 13 chr3 8095987 8096518 -219428060 - MER89 LTR ERV1 0 559 5 750 210 18 32 chr3 8096526 8096745 -219427833 - L1ME1 LINE L1 -19 6147 5932 233 259 56 9 chr3 8096800 8096908 -219427670 - L1MCc LINE L1 -5485 938 826 696 222 70 59 chr3 8097015 8097285 -219427293 - ORSL DNA AcHobo 0 275 3 436 277 18 45 chr3 8097452 8097684 -219426894 - L1MCc LINE L1 -5708 714 258 3286 92 2 38 chr3 8097901 8098371 -219426207 + MLT2A2 LTR ERVL 1 453 0 29 0 0 0 chr3 8099361 8099390 -219425188 + AT_rich Low_complexity Low_complexity 1 29 0 204 167 19 74 chr3 8099443 8099497 -219425081 + L2 LINE L2 3263 3313 0 1015 267 100 10 chr3 8099795 8100185 -219424393 - MER110 LTR ERV1 -22 469 45 231 146 21 0 chr3 8100342 8100390 -219424188 + (CAT)n Simple_repeat Simple_repeat 3 51 0 2061 194 5 3 chr3 8100419 8100811 -219423767 - LTR39 LTR ERV1 0 783 391 1433 185 34 84 chr3 8100924 8101078 -219423500 - LTR39 LTR ERV1 -388 395 235 6166 100 11 5 chr3 8101078 8102243 -219422335 + L1PA10 LINE L1 4982 6152 -16 1433 185 34 84 chr3 8102243 8102504 -219422074 - LTR39 LTR ERV1 -548 235 1 412 275 25 17 chr3 8102508 8102628 -219421950 + MIR SINE MIR 33 153 -55 229 345 78 5 chr3 8102993 8103132 -219421446 + MIR SINE MIR 1 154 -65 360 303 8 41 chr3 8103202 8103324 -219421254 - L2 LINE L2 -7 3306 3189 4655 95 23 0 chr3 8103441 8104093 -219420485 + PABL_B LTR ERV1 1 667 0 338 279 162 0 chr3 8104102 8104238 -219420340 - MIR SINE MIR -16 246 89 21 36 0 0 chr3 8105360 8105388 -219419190 + AT_rich Low_complexity Low_complexity 1 28 0 348 313 71 28 chr3 8105406 8105758 -219418820 + HAL1 LINE L1 1168 1534 -973 25 51 0 0 chr3 8105891 8105930 -219418648 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 8106027 8106047 -219418531 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 8106047 8106070 -219418508 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 8106936 8106956 -219417622 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 8106956 8106979 -219417599 + (TG)n Simple_repeat Simple_repeat 2 24 0 2757 181 42 42 chr3 8107402 8107996 -219416582 + L1MB8 LINE L1 5514 6110 -68 1748 154 68 0 chr3 8107996 8108276 -219416302 - AluSg SINE Alu -11 299 1 2757 181 42 42 chr3 8108276 8108340 -219416238 + L1MB8 LINE L1 6109 6172 -6 25 0 0 0 chr3 8108403 8108428 -219416150 + AT_rich Low_complexity Low_complexity 1 25 0 239 316 0 0 chr3 8108855 8108934 -219415644 + T-rich Low_complexity Low_complexity 1 79 0 1742 219 38 22 chr3 8109515 8109966 -219414612 - MER31A LTR ERV1 -27 458 1 191 262 0 24 chr3 8110284 8110326 -219414252 - L2 LINE L2 -92 3180 3140 288 289 48 64 chr3 8110399 8110586 -219413992 + L2 LINE L2 2650 2833 -481 25 0 0 0 chr3 8112308 8112333 -219412245 + AT_rich Low_complexity Low_complexity 1 25 0 187 273 55 18 chr3 8113599 8113654 -219410924 - MIR SINE MIR -186 76 20 537 207 59 0 chr3 8114016 8114153 -219410425 + MIR SINE MIR 98 242 -20 217 152 22 43 chr3 8114124 8114170 -219410408 + L2 LINE L2 3218 3262 -10 * 354 299 64 141 chr3 8114795 8115142 -219409436 - L2 LINE L2 -12 3260 2959 3260 157 50 10 chr3 8115142 8115722 -219408856 - LTR26 LTR ERV1 0 603 1 354 299 64 141 chr3 8115722 8115856 -219408722 - L2 LINE L2 -313 2959 2816 225 0 0 0 chr3 8116104 8116129 -219408449 + (TA)n Simple_repeat Simple_repeat 2 26 0 1281 199 45 6 chr3 8116364 8116788 -219407790 - MLT1D LTR MaLR 0 505 1 3824 69 54 163 chr3 8116870 8117642 -219406936 - LTR12 LTR ERV1 0 688 1 289 274 228 25 chr3 8117710 8117907 -219406671 + L2 LINE L2 2841 3077 -195 205 125 0 0 chr3 8117961 8117993 -219406585 - L2 LINE L2 0 3313 3282 523 287 140 37 chr3 8117993 8118394 -219406184 - LTR16A LTR ERVL 0 450 9 814 291 88 39 chr3 8118405 8118957 -219405621 - L2 LINE L2 -28 3285 2699 180 0 0 0 chr3 8119307 8119327 -219405251 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 216 307 45 23 chr3 8119573 8119661 -219404917 - L2 LINE L2 -33 3239 3150 761 177 35 0 chr3 8119665 8119806 -219404772 + MER5A DNA MER1_type 3 148 -41 2120 173 19 35 chr3 8120068 8120313 -219404265 - MSTB LTR MaLR 0 426 189 1830 92 3 76 chr3 8120313 8120629 -219403949 - L1PA10 LINE L1 -9 6159 5867 2120 173 19 35 chr3 8120629 8120812 -219403766 - MSTB LTR MaLR -237 189 5 4256 250 95 32 chr3 8122117 8122576 -219402002 + L1MB7 LINE L1 5 434 -6525 1870 191 89 0 chr3 8122576 8122969 -219401609 - MSTA LTR MaLR 0 428 1 4256 250 95 32 chr3 8122969 8124470 -219400108 + L1MB7 LINE L1 434 2107 -4852 1570 205 80 27 chr3 8124470 8124846 -219399732 - MSTD LTR MaLR 0 396 1 4256 250 95 32 chr3 8124846 8125233 -219399345 + L1MB7 LINE L1 2107 2468 -4491 444 243 84 61 chr3 8125352 8125686 -219398892 + L1MB7 LINE L1 2476 2820 -4318 6093 88 34 0 chr3 8125686 8126666 -219397912 + L1PA13 LINE L1 5152 6161 -2 444 243 84 61 chr3 8126666 8126677 -219397901 + L1MB7 LINE L1 2820 2829 -4309 2940 204 31 0 chr3 8126702 8127339 -219397239 + L1MB7 LINE L1 6328 6984 -11 344 320 0 33 chr3 8127443 8127596 -219396982 - MIR SINE MIR -95 167 20 608 288 149 10 chr3 8127700 8128117 -219396461 - L1ME4a LINE L1 -99 6022 5548 207 333 0 0 chr3 8128163 8128214 -219396364 + MIR SINE MIR 36 86 -176 273 111 89 0 chr3 8128216 8128261 -219396317 - MLT2D LTR ERVL 0 414 366 1141 219 84 43 chr3 8128346 8128693 -219395885 - MLT2D LTR ERVL -53 361 1 382 228 150 16 chr3 8128715 8128842 -219395736 + MIR SINE MIR 111 254 -8 32 86 0 0 chr3 8129024 8129105 -219395473 + AT_rich Low_complexity Low_complexity 1 81 0 1414 216 20 26 chr3 8129179 8129530 -219395048 + MLT1A1 LTR MaLR 1 349 -16 182 351 60 45 chr3 8129869 8130003 -219394575 - L2 LINE L2 -183 3089 2954 237 178 0 0 chr3 8131282 8131327 -219393251 - MER5A DNA MER1_type -137 52 8 28 29 0 0 chr3 8131504 8131539 -219393039 + AT_rich Low_complexity Low_complexity 1 35 0 226 244 0 49 chr3 8131631 8131713 -219392865 - HAL1b LINE L1 -519 829 752 2640 113 3 0 chr3 8132124 8132487 -219392091 - THE1B LTR MaLR 0 364 1 187 54 54 27 chr3 8132594 8132631 -219391947 + (TATG)n Simple_repeat Simple_repeat 2 39 0 363 336 52 8 chr3 8133036 8133170 -219391408 - MIR3 SINE MIR -63 145 6 2482 140 36 10 chr3 8133292 8133707 -219390871 - MSTA LTR MaLR 0 428 3 1827 169 13 3 chr3 8133849 8134151 -219390427 - AluJb SINE Alu -7 305 1 200 288 14 27 chr3 8134185 8134258 -219390320 + L2 LINE L2 2323 2394 -920 698 324 106 23 chr3 8134283 8134908 -219389670 + L2 LINE L2 2565 3243 -70 2340 168 24 0 chr3 8134909 8135327 -219389251 + MSTA LTR MaLR 1 428 0 1791 140 66 41 chr3 8137459 8137823 -219386755 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr3 8138193 8138215 -219386363 + AT_rich Low_complexity Low_complexity 1 22 0 569 276 75 10 chr3 8138509 8138916 -219385662 - L1 LINE L1 -2597 3549 3112 1369 176 82 34 chr3 8139091 8139536 -219385042 - LTR10A LTR ERV1 -79 530 1 189 303 13 26 chr3 8139676 8139752 -219384826 + MIR SINE MIR 188 262 0 4786 136 2 67 chr3 8140227 8141058 -219383520 - THE1C-int LTR MaLR -726 854 86 5644 75 13 1 chr3 8141058 8141815 -219382763 - MER4E LTR ERV1 0 766 1 4786 136 2 67 chr3 8141815 8141894 -219382684 - THE1C-int LTR MaLR -1494 86 3 1852 152 76 22 chr3 8141896 8142252 -219382326 - THE1C LTR MaLR 0 375 1 395 247 7 41 chr3 8142264 8142410 -219382168 + MER104 DNA Tc2 39 179 -1 297 309 166 7 chr3 8142571 8142710 -219381868 + MER91A DNA MER1_type 1 161 -35 432 337 96 33 chr3 8142969 8143458 -219381120 + MLT1K LTR MaLR 16 535 -53 264 314 0 10 chr3 8143582 8143684 -219380894 + CT-rich Low_complexity Low_complexity 2 102 0 208 280 178 37 chr3 8144092 8144199 -219380379 + L2 LINE L2 3192 3313 0 2534 140 24 2 chr3 8144544 8144957 -219379621 + MSTB LTR MaLR 3 424 -2 8137 185 44 9 chr3 8144959 8146554 -219378024 + MSTB-int LTR MaLR 1 1651 0 1971 170 78 18 chr3 8146556 8146956 -219377622 + MSTB LTR MaLR 3 426 0 3076 90 28 0 chr3 8147002 8147435 -219377143 - L1PA11 LINE L1 0 6174 5730 259 266 67 8 chr3 8149094 8149192 -219375386 + MIR SINE MIR 74 175 -68 1995 154 0 0 chr3 8149693 8149985 -219374593 + AluSx SINE Alu 1 292 -20 3434 48 0 0 chr3 8150319 8150734 -219373844 + L1PA7 LINE L1 5733 6147 -7 2099 119 30 0 chr3 8152530 8152833 -219371745 + AluSx SINE Alu 1 312 0 501 288 85 29 chr3 8153067 8153572 -219371006 + L1MC4a LINE L1 3877 4421 -1725 477 317 61 66 chr3 8153793 8153950 -219370628 + L1MC4a LINE L1 4733 4889 -1257 2270 99 3 0 chr3 8153950 8154244 -219370334 - AluSp SINE Alu -18 295 1 477 317 61 66 chr3 8154244 8154480 -219370098 + L1MC4a LINE L1 4889 5124 -1022 1067 273 90 56 chr3 8154627 8155286 -219369292 + L1MC4a LINE L1 5265 5819 -302 210 315 72 9 chr3 8156229 8156340 -219368238 - MIR SINE MIR 0 262 145 324 0 0 0 chr3 8156743 8156779 -219367799 + (A)n Simple_repeat Simple_repeat 1 36 0 3588 120 0 0 chr3 8156970 8157502 -219367076 + L1PA8 LINE L1 5635 6166 -6 2988 224 48 8 chr3 8157916 8158280 -219366298 + MER21B LTR ERV1 4 352 -511 2418 168 26 5 chr3 8158280 8158697 -219365881 - MSTB LTR MaLR 0 426 1 2988 224 48 8 chr3 8158697 8159054 -219365524 + MER21B LTR ERV1 352 754 -109 359 150 75 0 chr3 8159343 8159423 -219365155 - MER53 DNA DNA -81 108 23 355 145 43 0 chr3 8159364 8159433 -219365145 + MER53 DNA DNA 116 187 -2 * 228 182 0 0 chr3 8161290 8161334 -219363244 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1543 208 7 11 chr3 8161335 8161619 -219362959 - AluJo SINE Alu -21 291 9 233 309 72 31 chr3 8161976 8162073 -219362505 - MIR SINE MIR -66 142 42 273 119 0 0 chr3 8162239 8162281 -219362297 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2456 203 17 67 chr3 8162690 8163334 -219361244 - LTR9 LTR ERV1 0 612 1 1188 177 20 13 chr3 8163339 8163591 -219360987 - HUERS-P3 LTR ERV1 -6 8913 7163 225 263 18 0 chr3 8164507 8164564 -219360014 - L2 LINE L2 -5 3308 3251 555 336 85 24 chr3 8164690 8165068 -219359510 + LTR16C LTR ERVL 76 476 -15 499 270 0 0 chr3 8165082 8165193 -219359385 - MIR SINE MIR -115 147 37 1160 152 5 5 chr3 8165371 8165575 -219359003 + L1MB1 LINE L1 5960 6163 -5 595 238 161 9 chr3 8165609 8165832 -219358746 + MIR SINE MIR 6 262 0 926 216 82 5 chr3 8167308 8167516 -219357062 + MER58A DNA MER1_type 1 224 0 2824 123 82 14 chr3 8167710 8168222 -219356356 - LTR10A LTR ERV1 -62 547 1 12457 207 16 20 chr3 8168271 8171349 -219353229 - LTR10A-int LTR ERV1 0 7784 4065 4571 81 33 0 chr3 8171320 8172038 -219352540 - Harlequin LTR ERV1 -4320 2576 1835 * 329 191 167 0 chr3 8172053 8172137 -219352441 + LTR8 LTR ERV1 156 253 -438 1324 91 5 5 chr3 8172141 8172339 -219352239 - LTR10A-int LTR ERV1 -2805 2781 2584 * 4213 239 14 23 chr3 8172335 8173539 -219351039 - LTR10A-int LTR ERV1 -3034 4112 2686 2893 187 6 6 chr3 8173519 8174239 -219350339 - LTR10A-int LTR ERV1 -3963 2686 2202 * 314 157 79 0 chr3 8174227 8174316 -219350262 - LTR10A-int LTR ERV1 -4705 1944 1849 * 365 198 10 0 chr3 8174319 8174420 -219350158 + CT-rich Low_complexity Low_complexity 2 103 0 3997 114 5 3 chr3 8174452 8175084 -219349494 - LTR10A-int LTR ERV1 -4783 1866 1234 2533 141 53 4 chr3 8175068 8175522 -219349056 - LTR10A-int LTR ERV1 -5628 1021 546 * 1456 180 21 7 chr3 8175636 8175920 -219348658 - LTR10A-int LTR ERV1 -6359 290 3 2858 126 78 17 chr3 8175933 8176449 -219348129 - LTR10A LTR ERV1 -62 547 1 307 241 41 76 chr3 8176975 8177120 -219347458 - L2 LINE L2 -2 3311 3172 453 277 124 10 chr3 8177130 8177332 -219347246 + MIR SINE MIR 31 255 -7 1661 181 107 60 chr3 8177553 8178066 -219346512 - LTR10A LTR ERV1 -61 548 12 16234 102 29 51 chr3 8178077 8180925 -219343653 - Harlequin LTR ERV1 -4 6645 1906 11519 56 1 3 chr3 8180925 8183164 -219341414 - L1PA5 LINE L1 -13 6141 3906 16234 102 29 51 chr3 8183164 8184164 -219340414 - Harlequin LTR ERV1 -4743 1906 886 488 288 71 91 chr3 8184542 8184882 -219339696 - L2 LINE L2 -1 3271 2939 334 253 0 0 chr3 8184882 8184961 -219339617 - MER116 DNA Mariner 0 80 2 3005 165 25 77 chr3 8185563 8186292 -219338286 - LTR8 LTR ERV1 0 691 1 545 286 33 15 chr3 8187174 8187376 -219337202 - MIR SINE MIR -19 243 33 676 206 32 0 chr3 8187384 8187510 -219337068 - FLAM_A SINE Alu -12 130 1 341 385 37 7 chr3 8187544 8187679 -219336899 + MER5A DNA MER1_type 14 152 -37 346 197 215 5 chr3 8188198 8188307 -219336271 - MER5A DNA MER1_type 0 189 48 * 416 208 146 8 chr3 8188296 8188426 -219336152 - MER5A DNA MER1_type -41 148 1 255 248 9 124 chr3 8188657 8188770 -219335808 + MIR SINE MIR 82 181 -81 376 333 85 30 chr3 8188824 8189154 -219335424 + LTR33 LTR ERVL 105 452 -69 365 278 37 25 chr3 8189643 8189805 -219334773 + MLT1J LTR MaLR 347 510 -1 359 325 0 0 chr3 8189958 8190038 -219334540 + L2 LINE L2 3174 3253 -19 21 36 0 0 chr3 8190387 8190415 -219334163 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 8191207 8191228 -219333350 + AT_rich Low_complexity Low_complexity 1 21 0 395 339 41 67 chr3 8191338 8191927 -219332651 - L2 LINE L2 -2 3311 2741 1662 229 25 15 chr3 8192014 8192416 -219332162 + MLT2D LTR ERVL 1 406 -8 905 216 114 24 chr3 8193090 8193387 -219331191 + MER5C DNA MER1_type 1 324 0 23 0 0 0 chr3 8194151 8194174 -219330404 + AT_rich Low_complexity Low_complexity 1 23 0 475 195 27 87 chr3 8194738 8194887 -219329691 - MER5A DNA MER1_type -46 143 4 2116 148 0 7 chr3 8195433 8195743 -219328835 + AluSq SINE Alu 1 308 -5 424 190 153 21 chr3 8195759 8195937 -219328641 - MER58 DNA MER1_type -1 2419 1 2309 114 0 0 chr3 8196014 8196311 -219328267 - AluSc SINE Alu -12 297 1 2159 77 46 3 chr3 8196313 8196598 -219327980 - AluSx SINE Alu -15 297 1 21 0 0 0 chr3 8196598 8196619 -219327959 + AT_rich Low_complexity Low_complexity 1 21 0 428 286 160 28 chr3 8197128 8197341 -219327237 - MIR SINE MIR -11 251 11 189 107 0 0 chr3 8197519 8197547 -219327031 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 346 108 31 0 chr3 8197670 8197735 -219326843 + C-rich Low_complexity Low_complexity 4 70 0 1048 199 28 5 chr3 8197999 8198210 -219326368 - MER58A DNA MER1_type -3 221 6 577 306 41 30 chr3 8198470 8198741 -219325837 + MLT1G1 LTR MaLR 11 284 -311 354 23 0 0 chr3 8198944 8198987 -219325591 + (CA)n Simple_repeat Simple_repeat 1 43 0 782 236 15 10 chr3 8199162 8199357 -219325221 + MER58A DNA MER1_type 21 216 -8 441 281 84 0 chr3 8199363 8199530 -219325048 + MLT1G1 LTR MaLR 410 590 0 621 269 31 62 chr3 8200833 8201090 -219323488 + MIR SINE MIR 7 255 -7 2005 136 48 57 chr3 8201783 8202260 -219322318 + ERVL-B1 LTR ERVL 5285 5757 -7 1091 228 31 49 chr3 8202260 8202697 -219321881 + MLT2B1 LTR ERVL 1 434 -30 456 51 0 0 chr3 8202697 8202756 -219321822 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1091 228 31 49 chr3 8202756 8202787 -219321791 + MLT2B1 LTR ERVL 434 464 0 444 180 0 22 chr3 8202962 8203051 -219321527 + LTR16A1 LTR ERVL 371 457 0 196 152 0 0 chr3 8204243 8204276 -219320302 + MIR SINE MIR 157 189 -73 304 294 101 0 chr3 8204712 8204831 -219319747 - MER117 DNA MER1_type -65 132 2 526 162 48 0 chr3 8204913 8205018 -219319560 - L1PA11 LINE L1 0 6174 6065 1226 198 42 6 chr3 8205231 8205544 -219319034 + MER33 DNA MER1_type 1 324 0 225 288 45 30 chr3 8205872 8205938 -219318640 + L2 LINE L2 3166 3232 -40 591 293 164 8 chr3 8206082 8206338 -219318240 - LTR16C LTR ERVL -10 481 186 275 322 71 31 chr3 8207686 8207915 -219316663 + L2 LINE L2 2772 3009 -263 209 181 193 48 chr3 8208381 8208464 -219316114 + L2 LINE L2 3219 3313 0 529 272 26 79 chr3 8209354 8209755 -219314823 + L2 LINE L2 2569 3029 -243 1679 215 28 50 chr3 8209773 8210238 -219314340 + MLT2B1 LTR ERVL 6 460 -60 258 280 57 64 chr3 8210307 8210464 -219314114 + L2 LINE L2 3122 3277 -36 2206 101 0 14 chr3 8211091 8211377 -219313201 - AluSc SINE Alu -8 301 20 2038 138 7 0 chr3 8211850 8212139 -219312439 - AluSx SINE Alu -19 293 3 180 0 0 0 chr3 8212236 8212256 -219312322 + (A)n Simple_repeat Simple_repeat 1 20 0 257 248 40 40 chr3 8212351 8212452 -219312126 - Charlie7 DNA MER1_type -2506 106 6 433 188 38 47 chr3 8212805 8213005 -219311573 + MER5C DNA MER1_type 3 280 -44 956 244 58 46 chr3 8213008 8213402 -219311176 + L1MA9 LINE L1 5876 6274 -38 202 189 0 0 chr3 8213446 8213483 -219311095 + MER5C DNA MER1_type 288 324 0 1770 72 0 32 chr3 8213693 8213944 -219310634 + L1PA6 LINE L1 5912 6154 0 323 278 38 15 chr3 8214220 8214353 -219310225 + MIR SINE MIR 79 214 -48 185 402 43 0 chr3 8214408 8214525 -219310053 - L2 LINE L2 -1 3312 3191 235 390 41 8 chr3 8214561 8214684 -219309894 + L2 LINE L2 3143 3269 -3 435 280 148 7 chr3 8214710 8215044 -219309534 - LTR16C LTR ERVL -31 460 50 25 0 0 0 chr3 8215265 8215290 -219309288 + AT_rich Low_complexity Low_complexity 1 25 0 463 300 176 5 chr3 8215624 8215834 -219308744 - MIR SINE MIR -12 250 5 362 264 50 41 chr3 8218565 8218686 -219305892 - L2 LINE L2 -1 3312 3191 2160 127 3 3 chr3 8218692 8218992 -219305586 - AluSx SINE Alu -12 300 1 235 361 31 0 chr3 8219058 8219188 -219305390 - MIR SINE MIR -6 256 123 389 289 49 14 chr3 8219207 8219349 -219305229 - MIR SINE MIR 0 262 116 356 213 53 43 chr3 8219761 8219855 -219304723 - MIR3 SINE MIR -15 193 99 701 235 42 0 chr3 8220126 8220292 -219304286 - MER5B DNA MER1_type -5 173 1 463 344 46 15 chr3 8220348 8220543 -219304035 - MIR SINE MIR -4 258 58 246 225 25 12 chr3 8220964 8221044 -219303534 + MLT1L LTR MaLR 181 261 -354 247 244 122 0 chr3 8221621 8221703 -219302875 + MLT1L LTR MaLR 517 608 -7 639 311 6 0 chr3 8221719 8221896 -219302682 - MER45A DNA AcHobo 0 178 1 180 326 54 71 chr3 8223205 8223389 -219301189 + L2 LINE L2 2873 3053 -219 1526 120 6 28 chr3 8223619 8223894 -219300684 - L1PA16 LINE L1 -457 5727 5462 1450 123 27 116 chr3 8223910 8224412 -219300166 + L1PA16 LINE L1 5719 6129 -2 222 313 104 0 chr3 8224564 8224631 -219299947 + L2 LINE L2 3240 3313 0 660 233 29 71 chr3 8225703 8226018 -219298560 - MLT1E2 LTR MaLR -304 201 2 394 313 46 0 chr3 8227039 8227170 -219297408 + L2 LINE L2 2670 2806 -508 192 206 143 32 chr3 8227174 8227237 -219297341 + MER5C DNA MER1_type 1 70 -254 272 288 25 0 chr3 8227347 8227427 -219297151 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 426 256 22 112 chr3 8227476 8227788 -219296790 + L2 LINE L2 3020 3303 -10 219 186 0 0 chr3 8227831 8227874 -219296704 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 213 39 0 0 chr3 8227874 8227900 -219296678 + (CA)n Simple_repeat Simple_repeat 2 27 0 3828 148 43 40 chr3 8227903 8228676 -219295902 - LTR1 LTR ERV1 0 785 11 229 247 82 24 chr3 8229561 8229646 -219294932 - MIR SINE MIR -70 192 103 889 230 25 0 chr3 8229755 8229990 -219294588 + L1MA9 LINE L1 6035 6275 -37 531 261 84 104 chr3 8230091 8230239 -219294339 - L1MC4 LINE L1 -1 8041 7892 486 0 0 0 chr3 8230239 8230293 -219294285 + (CA)n Simple_repeat Simple_repeat 2 55 0 1110 195 125 35 chr3 8230295 8230608 -219293970 - MER2 DNA MER2_type -3 341 1 531 261 84 104 chr3 8230608 8231215 -219293363 - L1MC4 LINE L1 -151 7891 7298 613 268 93 34 chr3 8231228 8231616 -219292962 - L1M4 LINE L1 -3042 3104 2694 1100 200 17 13 chr3 8231725 8232025 -219292553 - L1MEc LINE L1 -1388 4692 4392 2126 224 48 64 chr3 8232037 8232312 -219292266 - L1MEc LINE L1 -2701 3379 3101 3123 127 8 0 chr3 8232312 8232794 -219291784 + LTR19A LTR ERV1 1 486 0 2126 224 48 64 chr3 8232794 8232960 -219291618 - L1MEc LINE L1 -2979 3101 2934 7107 57 18 3 chr3 8232960 8234479 -219290099 - L1PA6 LINE L1 -8 6146 4616 2126 224 48 64 chr3 8234479 8234937 -219289641 - L1MEc LINE L1 -3146 2934 2494 512 277 90 30 chr3 8235061 8235592 -219288986 - L1MEc LINE L1 -4574 1687 1125 2710 194 39 28 chr3 8235659 8236349 -219288229 - L1MA9 LINE L1 -108 6204 5507 226 281 117 10 chr3 8236383 8236682 -219287896 - L1MEc LINE L1 -5056 1014 684 272 150 33 0 chr3 8236682 8236742 -219287836 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 257 239 60 26 chr3 8237053 8237170 -219287408 - L1MC4 LINE L1 -820 7222 7102 904 279 106 19 chr3 8237184 8237717 -219286861 - L1MC4 LINE L1 -886 6993 6346 355 167 0 0 chr3 8237720 8237786 -219286792 - L1ME2 LINE L1 -11 6153 6088 873 165 16 5 chr3 8238873 8239061 -219285517 - L1MC3 LINE L1 -1 7784 7595 1892 221 51 26 chr3 8239116 8239583 -219284995 - MLT2B1 LTR ERVL -41 479 1 1528 232 41 14 chr3 8239583 8240070 -219284508 + L1MC4 LINE L1 7542 8041 -1 2482 84 0 0 chr3 8240102 8240413 -219284165 - AluY SINE Alu 0 311 1 300 267 44 11 chr3 8240519 8240609 -219283969 - L2 LINE L2 -10 3303 3211 300 359 56 26 chr3 8240683 8240878 -219283700 - L2 LINE L2 -671 2643 2443 2445 61 0 0 chr3 8241453 8241750 -219282828 - AluY SINE Alu -10 301 5 230 253 44 33 chr3 8241788 8241879 -219282699 + HAL1 LINE L1 151 242 -2265 395 303 44 26 chr3 8241956 8242227 -219282351 + HAL1 LINE L1 2229 2504 -3 493 215 74 60 chr3 8242591 8242740 -219281838 - MER5B DNA MER1_type 0 178 28 400 296 8 0 chr3 8242842 8242974 -219281604 + MER117 DNA MER1_type 5 137 -60 23 0 0 0 chr3 8243063 8243086 -219281492 + AT_rich Low_complexity Low_complexity 1 23 0 248 325 105 44 chr3 8243261 8243375 -219281203 + L2 LINE L2 3144 3264 -8 426 283 46 16 chr3 8244028 8244339 -219280239 + MLT1G1 LTR MaLR 1 292 -298 577 286 68 32 chr3 8244697 8244917 -219279661 + MIR SINE MIR 32 259 -3 2303 62 7 36 chr3 8245550 8245855 -219278723 + AluY SINE Alu 1 296 -15 3208 70 14 0 chr3 8247020 8247575 -219277003 + L1P3 LINE L1 5137 5700 -454 366 235 137 10 chr3 8247729 8247831 -219276747 + LTR33 LTR ERVL 78 192 -329 26 0 0 0 chr3 8248306 8248332 -219276246 + AT_rich Low_complexity Low_complexity 1 26 0 1228 205 15 11 chr3 8248417 8248743 -219275835 + MSTD LTR MaLR 13 396 0 183 129 0 0 chr3 8249981 8250012 -219274566 + (A)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 8250065 8250093 -219274485 + AT_rich Low_complexity Low_complexity 1 28 0 1170 50 0 38 chr3 8250495 8250654 -219273924 - AluY SINE Alu -1 310 158 198 304 63 13 chr3 8251880 8251959 -219272619 + MIR3 SINE MIR 118 200 -8 473 287 0 17 chr3 8253101 8253216 -219271362 - L2 LINE L2 -1 3271 3159 1501 250 108 14 chr3 8253241 8253733 -219270845 - MLT1F LTR MaLR -2 540 3 317 371 5 27 chr3 8253877 8254063 -219270515 - L2 LINE L2 -237 3035 2854 229 122 0 0 chr3 8254210 8254251 -219270327 - L1MB3 LINE L1 -7 6176 6136 1989 213 6 15 chr3 8254257 8254726 -219269852 - L1MB4 LINE L1 -114 6066 5602 443 111 10 61 chr3 8254750 8254849 -219269729 - L1MA5 LINE L1 0 6300 6207 2433 90 0 13 chr3 8254863 8255174 -219269404 - AluSg SINE Alu -3 307 1 1895 126 7 32 chr3 8256072 8256381 -219268197 + AluSx SINE Alu 1 301 -11 413 165 10 0 chr3 8257679 8257776 -219266802 + CT-rich Low_complexity Low_complexity 3 100 0 1096 306 126 61 chr3 8259276 8260355 -219264223 + L2 LINE L2 1986 3168 -145 1985 127 7 0 chr3 8260355 8260646 -219263932 + AluY SINE Alu 1 293 -18 1096 306 126 61 chr3 8260646 8260803 -219263775 + L2 LINE L2 3168 3313 0 198 420 23 0 chr3 8260968 8261099 -219263479 - L2 LINE L2 -345 2968 2835 1189 195 125 8 chr3 8261149 8261405 -219263173 - AluJb SINE Alu -19 293 8 185 237 32 75 chr3 8261955 8262048 -219262530 + MIR SINE MIR 174 262 0 991 171 28 32 chr3 8262117 8262333 -219262245 + MER20 DNA MER1_type 1 215 -4 233 289 36 12 chr3 8262417 8262500 -219262078 + L2 LINE L2 3185 3269 -3 478 316 23 6 chr3 8263003 8263174 -219261404 + MER5B DNA MER1_type 3 176 -2 217 278 42 14 chr3 8263530 8263602 -219260976 - L2 LINE L2 -2 3270 3197 726 212 7 0 chr3 8264567 8264704 -219259874 + MER5A DNA MER1_type 2 139 -50 482 168 147 7 chr3 8264722 8264865 -219259713 - L1MC3 LINE L1 -187 7598 7436 266 197 42 0 chr3 8264874 8264945 -219259633 - L1ME2 LINE L1 -1 6163 6090 292 210 0 0 chr3 8264947 8265009 -219259569 + MER5A DNA MER1_type 127 188 -1 198 286 48 0 chr3 8265226 8265289 -219259289 - MIR SINE MIR 0 262 197 12665 135 32 10 chr3 8265297 8267475 -219257103 + Tigger1 DNA MER2_type 24 2249 -169 317 127 82 9 chr3 8267486 8267596 -219256982 + (TA)n Simple_repeat Simple_repeat 2 119 0 263 60 15 104 chr3 8267596 8267663 -219256915 + LTR66 LTR ERVL 379 439 -171 1566 197 50 9 chr3 8267711 8268031 -219256547 + LTR32 LTR ERVL 15 347 -124 666 232 0 19 chr3 8268131 8268286 -219256292 + LTR32 LTR ERVL 320 471 0 922 113 0 33 chr3 8268286 8268436 -219256142 + Tigger1 DNA MER2_type 2274 2418 0 246 358 20 47 chr3 8268960 8269108 -219255470 + MER5A DNA MER1_type 31 174 -15 718 233 28 128 chr3 8270320 8270363 -219254215 - MLT2D LTR ERVL -1 413 367 321 26 0 0 chr3 8270363 8270401 -219254177 + (TG)n Simple_repeat Simple_repeat 2 39 0 718 233 28 128 chr3 8270401 8270816 -219253762 - MLT2D LTR ERVL -47 367 1 3342 155 16 75 chr3 8271241 8271975 -219252603 + LTR8 LTR ERV1 1 691 0 604 290 6 0 chr3 8274160 8274322 -219250256 - MIR SINE MIR -8 254 92 465 256 80 8 chr3 8274375 8274500 -219250078 - MER45A DNA AcHobo -44 134 1 180 111 0 0 chr3 8274581 8274608 -219249970 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 93 3 2 chr3 8274651 8274948 -219249630 + THE1A LTR MaLR 1 355 0 187 326 0 0 chr3 8277547 8277590 -219246988 - MIR SINE MIR -10 252 210 451 312 145 14 chr3 8278641 8278862 -219245716 - MIR SINE MIR 0 262 13 183 372 88 9 chr3 8278918 8279031 -219245547 + L2 LINE L2 3147 3268 -4 1147 209 83 55 chr3 8279119 8279555 -219245023 + LTR37B LTR ERV1 21 468 0 23 0 0 0 chr3 8279574 8279597 -219244981 + AT_rich Low_complexity Low_complexity 1 23 0 504 313 55 20 chr3 8279647 8279848 -219244730 - MIR SINE MIR -46 216 9 704 291 58 21 chr3 8279968 8280209 -219244369 - MIR SINE MIR 0 262 13 1770 128 89 13 chr3 8280730 8281034 -219243544 - MER1B DNA MER1_type 0 339 13 390 288 6 106 chr3 8281219 8281389 -219243189 - MER5A DNA MER1_type -36 153 1 207 222 0 48 chr3 8281631 8281694 -219242884 + GA-rich Low_complexity Low_complexity 1 60 0 1354 195 91 21 chr3 8281849 8281978 -219242600 + MLT1A1 LTR MaLR 3 121 -244 2345 84 7 0 chr3 8281978 8282276 -219242302 + AluY SINE Alu 6 305 -6 1354 195 91 21 chr3 8282276 8282485 -219242093 + MLT1A1 LTR MaLR 121 365 0 267 295 71 27 chr3 8282798 8282910 -219241668 + L2 LINE L2 3153 3269 -3 321 241 19 46 chr3 8283956 8284064 -219240514 - MLT1G1 LTR MaLR -25 570 466 510 289 50 5 chr3 8284141 8284382 -219240196 - MLT1H1 LTR MaLR -291 264 8 727 272 110 4 chr3 8284382 8284610 -219239968 + MIR SINE MIR 11 262 0 2556 61 0 0 chr3 8286458 8286769 -219237809 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 8286863 8286885 -219237693 + AT_rich Low_complexity Low_complexity 1 22 0 219 209 12 23 chr3 8287000 8287086 -219237492 + (TTA)n Simple_repeat Simple_repeat 3 87 0 211 203 31 0 chr3 8287354 8287418 -219237160 + CT-rich Low_complexity Low_complexity 3 68 0 852 202 52 15 chr3 8287604 8287871 -219236707 + Charlie1b DNA MER1_type 149 425 -98 10022 38 4 1 chr3 8287874 8289874 -219234704 - L1PA4 LINE L1 -2 6153 4144 2755 40 0 0 chr3 8289874 8290228 -219234350 + L1P LINE L1 3831 4184 -1962 251 222 62 37 chr3 8290239 8290320 -219234258 + Charlie1b DNA MER1_type 435 517 -6 472 309 101 53 chr3 8290475 8291153 -219233425 - L1M4 LINE L1 -1085 5061 4356 279 185 31 15 chr3 8291442 8291507 -219233071 - MSTB2 LTR MaLR -391 66 1 1159 174 28 0 chr3 8292567 8292779 -219231799 - MER20 DNA MER1_type -1 218 1 27 62 0 0 chr3 8294013 8294061 -219230517 + AT_rich Low_complexity Low_complexity 1 48 0 2167 118 0 3 chr3 8294140 8294437 -219230141 + AluSg SINE Alu 1 296 -14 243 329 27 7 chr3 8294548 8294694 -219229884 - L1ME LINE L1 -233 5888 5740 1715 200 115 16 chr3 8294826 8295251 -219229327 + MLT1C LTR MaLR 1 467 0 182 197 15 76 chr3 8295505 8295571 -219229007 - MIR SINE MIR -16 246 185 410 269 15 54 chr3 8297239 8297369 -219227209 - L2 LINE L2 0 3272 3148 2381 67 0 0 chr3 8298878 8299189 -219225389 - AluY SINE Alu 0 311 1 442 316 58 12 chr3 8299582 8299753 -219224825 + MER5A DNA MER1_type 3 181 -8 509 304 40 13 chr3 8300374 8300598 -219223980 + MIR SINE MIR 33 262 0 241 222 74 28 chr3 8300958 8301066 -219223512 + LTR67 LTR ERVL 442 554 -3 276 303 23 8 chr3 8301201 8301333 -219223245 - L1ME LINE L1 -278 5843 5710 2241 185 58 28 chr3 8302628 8303245 -219221333 - Charlie1b DNA MER1_type -35 488 2091 972 183 33 15 chr3 8303245 8303591 -219220987 - MER31B LTR ERV1 -72 394 1 2719 214 67 30 chr3 8303593 8304350 -219220228 - Charlie1a DNA MER1_type -669 786 2 330 26 0 0 chr3 8304466 8304505 -219220073 + (TG)n Simple_repeat Simple_repeat 2 40 0 356 265 0 10 chr3 8304505 8304607 -219219971 + GA-rich Low_complexity Low_complexity 2 102 0 878 101 62 0 chr3 8305566 8305695 -219218883 + AluSc SINE Alu 165 301 -8 515 329 102 12 chr3 8305825 8306150 -219218428 + L1ME4a LINE L1 5590 5943 -178 2563 20 0 0 chr3 8307513 8307805 -219216773 + AluY SINE Alu 1 292 -19 561 355 22 16 chr3 8308365 8308548 -219216030 - MER91A DNA MER1_type -12 184 1 912 262 32 26 chr3 8309220 8309533 -219215045 - MER110 LTR ERV1 0 491 177 196 244 22 0 chr3 8310112 8310157 -219214421 + MIR SINE MIR 100 145 -63 592 259 49 11 chr3 8310202 8310387 -219214191 - MIR SINE MIR -13 249 58 333 320 28 118 chr3 8310633 8310989 -219213589 - L3 LINE CR1 -208 1369 1046 444 330 14 46 chr3 8311247 8311465 -219213113 + MIR SINE MIR 26 236 -26 2068 148 3 0 chr3 8311936 8312234 -219212344 - AluSx SINE Alu -13 299 1 219 258 54 54 chr3 8313346 8313439 -219211139 - MIR SINE MIR -94 168 76 1202 264 41 90 chr3 8313607 8314504 -219210074 - L1ME LINE L1 -5182 888 36 706 238 16 21 chr3 8314756 8314945 -219209633 - MER58A DNA MER1_type 0 224 37 4270 150 29 37 chr3 8316017 8316478 -219208100 - Tigger1 DNA MER2_type -9 2409 1957 3581 87 8 0 chr3 8316478 8316972 -219207606 + L1PA14 LINE L1 5664 6161 0 4270 150 29 37 chr3 8316972 8317351 -219207227 - Tigger1 DNA MER2_type -461 1957 1576 14219 167 18 24 chr3 8317357 8323365 -219201213 - L1MA3 LINE L1 0 7724 1091 333 0 0 0 chr3 8323365 8323402 -219201176 + (TG)n Simple_repeat Simple_repeat 2 38 0 14219 167 18 24 chr3 8323402 8324473 -219200105 - L1MA3 LINE L1 -6633 1091 16 9290 130 30 1 chr3 8324479 8325997 -219198581 - Tigger1 DNA MER2_type -834 1584 24 364 258 13 71 chr3 8326933 8326947 -219197631 + MER5A DNA MER1_type 1 5 -184 292 238 62 94 chr3 8326947 8327107 -219197471 - MER5A DNA MER1_type -2 187 33 554 327 115 4 chr3 8328092 8328318 -219196260 - MIR SINE MIR -10 252 2 187 292 0 31 chr3 8328526 8328591 -219195987 - MIR3 SINE MIR -13 195 133 261 0 0 0 chr3 8328750 8328779 -219195799 + (T)n Simple_repeat Simple_repeat 1 29 0 465 260 78 32 chr3 8328889 8329043 -219195535 - MIR SINE MIR 0 262 102 198 0 0 0 chr3 8329103 8329125 -219195453 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 7828 117 17 33 chr3 8330227 8331522 -219193056 - THE1B-int LTR MaLR -300 1280 7 2002 146 30 0 chr3 8331535 8331870 -219192708 - THE1B LTR MaLR -12 352 8 512 212 48 7 chr3 8331912 8332058 -219192520 - L1MD2 LINE L1 -13 6582 6431 3044 205 28 20 chr3 8332059 8332921 -219191657 - L1MD1 LINE L1 -208 6270 5515 2577 188 21 0 chr3 8332922 8333391 -219191187 - LTR42 LTR ERVL 0 495 17 255 273 0 15 chr3 8333409 8333475 -219191103 - PABL_B-int LTR ERV1 -696 6062 5998 401 302 0 0 chr3 8333723 8333829 -219190749 - PABL_B-int LTR ERV1 -450 6672 6567 207 0 0 0 chr3 8333980 8334003 -219190575 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr3 8334788 8334817 -219189761 + (A)n Simple_repeat Simple_repeat 1 29 0 656 319 58 47 chr3 8336785 8337292 -219187286 - LTR57-int LTR ERVL -3177 2870 2370 2082 169 53 19 chr3 8337292 8337707 -219186871 + MSTB1 LTR MaLR 4 432 0 656 319 58 47 chr3 8337707 8338188 -219186390 - LTR57-int LTR ERVL -3677 2370 1718 2564 175 50 8 chr3 8339978 8340453 -219184125 - LTR42 LTR ERVL 0 495 1 1549 253 6 37 chr3 8340453 8340962 -219183616 - L1MD1 LINE L1 -866 5516 5024 452 284 50 44 chr3 8340969 8341242 -219183336 - L1MD1 LINE L1 -3686 2696 2414 1700 189 0 0 chr3 8341242 8341539 -219183039 - AluJb SINE Alu -15 297 1 452 284 50 44 chr3 8341539 8341684 -219182894 - L1MD1 LINE L1 -3968 2414 2271 445 318 61 20 chr3 8341982 8342466 -219182112 - L1MD1 LINE L1 -4512 1870 1266 393 365 66 5 chr3 8342754 8342965 -219181613 - L1MD1 LINE L1 -5451 921 698 847 163 94 0 chr3 8343285 8343445 -219181133 + FRAM SINE Alu 1 174 -2 2746 84 25 5 chr3 8343512 8343906 -219180672 - L1PA13 LINE L1 0 6163 5762 1416 211 33 86 chr3 8343915 8344394 -219180184 + L1ME3 LINE L1 5709 6162 0 334 226 24 36 chr3 8345193 8345277 -219179301 + L2 LINE L2 3189 3271 -1 236 264 38 0 chr3 8345539 8345592 -219178986 - L2 LINE L2 -11 3261 3207 211 258 21 62 chr3 8346078 8346175 -219178403 + MIR SINE MIR 170 262 0 481 332 35 26 chr3 8346205 8346437 -219178141 + MIR SINE MIR 12 245 -17 247 310 0 0 chr3 8348013 8348071 -219176507 + polypyrimidine Low_complexity Low_complexity 3 60 0 25 0 0 0 chr3 8351297 8351322 -219173256 + AT_rich Low_complexity Low_complexity 1 25 0 710 261 86 27 chr3 8401528 8402049 -219122529 - HAL1b LINE L1 0 1348 797 243 61 0 0 chr3 8402671 8402704 -219121874 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2059 108 0 31 chr3 8402706 8402994 -219121584 - AluSx SINE Alu -33 279 1 208 256 179 96 chr3 8404014 8404170 -219120408 - MIR3 SINE MIR -38 170 2 340 266 190 32 chr3 8404558 8404782 -219119796 + L1ME4a LINE L1 5701 5959 -162 744 237 41 46 chr3 8404847 8405066 -219119512 + MER20 DNA MER1_type 2 219 0 2590 123 5 2 chr3 8405619 8406019 -219118559 + L1PB1 LINE L1 5751 6151 0 23 54 0 0 chr3 8406019 8406056 -219118522 + AT_rich Low_complexity Low_complexity 1 37 0 359 295 100 53 chr3 8406060 8406545 -219118033 - L1MC/D LINE L1 -747 5938 5783 1880 217 61 68 chr3 8406566 8407124 -219117454 + MLT2B3 LTR ERVL 1 554 0 2217 287 76 24 chr3 8407175 8409121 -219115457 - L1MC/D LINE L1 -1007 5533 3467 * 10331 204 24 32 chr3 8409118 8412837 -219111741 - L1PA16 LINE L1 -2 6164 2475 3506 281 86 15 chr3 8412833 8413123 -219111455 - L1MC/D LINE L1 -5149 1391 1123 * 9262 34 1 19 chr3 8413123 8415056 -219109522 - L1PA3 LINE L1 0 6155 4243 3506 281 86 15 chr3 8415056 8416039 -219108539 - L1MC/D LINE L1 -5417 1123 27 1895 286 100 38 chr3 8416042 8418401 -219106177 - L1ME LINE L1 -2295 3785 1302 498 251 107 2 chr3 8418403 8418585 -219105993 + MER58A DNA MER1_type 9 213 0 462 95 0 0 chr3 8418558 8418621 -219105957 + MADE1 DNA Mariner 1 63 -17 * 268 258 51 73 chr3 8418630 8418808 -219105770 - L1ME LINE L1 -4929 1151 978 334 268 176 35 chr3 8418873 8418982 -219105596 - L1ME LINE L1 -5148 934 842 2382 80 6 6 chr3 8418982 8419295 -219105283 - AluSq SINE Alu 0 313 1 334 268 176 35 chr3 8419295 8419505 -219105073 - L1ME LINE L1 -5240 842 677 2319 45 28 0 chr3 8420304 8420593 -219103985 + AluY SINE Alu 1 297 -14 242 216 54 40 chr3 8420593 8420667 -219103911 - MER72 LTR ERV1 -643 79 5 804 155 14 20 chr3 8420669 8420817 -219103761 - FRAM SINE Alu -26 150 4 2325 78 10 0 chr3 8420833 8421128 -219103450 - AluSc SINE Alu -11 298 1 421 211 41 88 chr3 8421154 8421325 -219103253 + L1MC4a LINE L1 5730 5892 -1916 1833 151 18 0 chr3 8421326 8421605 -219102973 + AluSx SINE Alu 1 284 -28 2434 57 0 0 chr3 8421605 8421901 -219102677 + AluY SINE Alu 1 296 -15 347 281 34 0 chr3 8422402 8422491 -219102087 - L2 LINE L2 0 3313 3222 207 100 0 0 chr3 8422594 8422624 -219101954 + (CATA)n Simple_repeat Simple_repeat 2 31 0 862 303 85 8 chr3 8423966 8424329 -219100249 - MLT1I LTR MaLR 0 409 19 572 283 72 0 chr3 8424573 8424753 -219099825 - LTR16C LTR ERVL -2 489 297 317 272 19 19 chr3 8424766 8424869 -219099709 - LTR16B LTR ERVL 0 464 362 494 326 80 5 chr3 8424937 8425124 -219099454 - LTR16B LTR ERVL -263 201 1 348 326 96 17 chr3 8425131 8425309 -219099269 - LTR16C LTR ERVL -210 281 90 2260 109 0 6 chr3 8425494 8425805 -219098773 + AluSq SINE Alu 1 309 -4 388 217 12 12 chr3 8425937 8426020 -219098558 + MIR SINE MIR 86 168 -94 358 274 44 9 chr3 8426034 8426147 -219098431 + MIR SINE MIR 94 210 -52 399 313 94 40 chr3 8426393 8426668 -219097910 + MLT1J LTR MaLR 218 507 -4 203 260 41 55 chr3 8426943 8427016 -219097562 - MIR SINE MIR 0 262 191 389 97 14 0 chr3 8427635 8427707 -219096871 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2062 131 86 0 chr3 8427724 8428060 -219096518 + Tigger2 DNA MER2_type 2353 2717 -1 234 81 0 0 chr3 8428060 8428097 -219096481 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 179 208 38 chr3 8428785 8428891 -219095687 - L3 LINE CR1 -116 1461 1338 185 108 27 0 chr3 8429170 8429207 -219095371 + A-rich Low_complexity Low_complexity 1 38 0 709 224 0 34 chr3 8429381 8429528 -219095050 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1382 177 4 38 chr3 8429526 8429679 -219094899 + Tigger3(Golem) DNA MER2_type 2782 2924 -114 1702 225 80 104 chr3 8429679 8430525 -219094053 + LTR1B LTR ERV1 1 826 0 1382 177 4 38 chr3 8430525 8430637 -219093941 + Tigger3(Golem) DNA MER2_type 2924 3038 0 586 264 52 26 chr3 8431087 8431356 -219093222 - MER97c DNA MER1_type? -1 1089 814 875 259 95 15 chr3 8431634 8431896 -219092682 - MER97a DNA MER1_type? -288 606 324 574 273 65 96 chr3 8432032 8432081 -219092497 + MLT1J LTR MaLR 166 215 -296 1793 116 0 4 chr3 8432081 8432331 -219092247 + AluSg SINE Alu 47 295 -15 574 273 65 96 chr3 8432331 8432603 -219091975 + MLT1J LTR MaLR 215 477 -34 181 214 309 0 chr3 8432768 8432852 -219091726 + MIR SINE MIR 142 251 -11 659 230 105 0 chr3 8433133 8433285 -219091293 + MER96 DNA MER1_type? 8 175 0 545 272 11 88 chr3 8433534 8433817 -219090761 - L1ME3 LINE L1 0 6162 5902 * 1121 246 62 22 chr3 8433814 8434278 -219090300 - L1M4 LINE L1 -1715 4431 3949 2277 229 35 63 chr3 8434362 8434664 -219089914 - L1ME1 LINE L1 -44 6122 5813 1702 163 3 10 chr3 8434664 8434952 -219089626 - AluSx SINE Alu -26 286 1 2277 229 35 63 chr3 8434952 8435444 -219089134 - L1ME1 LINE L1 -353 5813 5350 6709 75 2 5 chr3 8435501 8436812 -219087766 - L1PA6 LINE L1 0 6154 4843 25792 38 3 0 chr3 8436814 8440887 -219083691 + L1PA4 LINE L1 2013 6092 -63 1802 218 46 3 chr3 8441386 8441776 -219082802 - ERVL LTR ERVL -4169 1595 1189 3015 243 73 4 chr3 8441776 8442575 -219082003 - ERVL LTR ERVL -4735 1029 176 539 271 65 72 chr3 8442849 8443373 -219081205 - L1MC4a LINE L1 -820 7222 6618 611 201 7 0 chr3 8443381 8443520 -219081058 - L1MA4A LINE L1 0 6303 6164 2141 185 33 2 chr3 8443520 8444001 -219080577 - L1 LINE L1 -1118 5028 4533 1253 230 84 44 chr3 8444206 8444549 -219080029 - LTR18A LTR ERVL 0 357 1 1902 123 0 32 chr3 8444550 8444859 -219079719 - HERVL18 LTR ERVL 0 6047 5749 1535 151 4 4 chr3 8444860 8445112 -219079466 - HERVL18 LTR ERVL -262 5785 5534 1631 290 39 31 chr3 8445427 8446013 -219078565 + MLT1E LTR MaLR 3 593 0 283 193 0 0 chr3 8446194 8446251 -219078327 - Charlie5 DNA MER1_type -27 2585 2529 276 277 15 42 chr3 8446589 8446828 -219077750 + CT-rich Low_complexity Low_complexity 1 232 0 220 149 19 56 chr3 8446829 8446936 -219077642 + T-rich Low_complexity Low_complexity 5 107 0 6197 35 2 1 chr3 8447028 8448422 -219076156 - L1PA2 LINE L1 -156 5999 4605 36079 88 5 6 chr3 8448523 8454383 -219070195 - L1PA4 LINE L1 -292 5863 11 1950 261 79 19 chr3 8454390 8455287 -219069291 - L1M4 LINE L1 -789 5357 4407 603 224 90 52 chr3 8455329 8455478 -219069100 - L1MCc LINE L1 -6130 293 128 2075 148 0 3 chr3 8455478 8455496 -219069082 - AluSq SINE Alu -9 304 287 333 0 0 0 chr3 8455496 8455533 -219069045 + (TG)n Simple_repeat Simple_repeat 2 38 0 2075 148 0 3 chr3 8455533 8455818 -219068760 - AluSq SINE Alu -26 287 2 603 224 90 52 chr3 8455818 8455936 -219068642 - L1MCc LINE L1 -6295 128 16 479 270 96 17 chr3 8455941 8456296 -219068282 - L1M4 LINE L1 -3177 2969 2587 2016 121 7 33 chr3 8456307 8456613 -219067965 + AluSx SINE Alu 1 298 -14 527 291 24 12 chr3 8456623 8456874 -219067704 - L1M4 LINE L1 -3625 2521 2268 184 294 0 20 chr3 8457019 8457070 -219067508 - L2 LINE L2 -1 3312 3263 271 228 0 18 chr3 8458283 8458340 -219066238 - L2 LINE L2 -94 3219 3164 298 313 91 20 chr3 8459632 8459731 -219064847 + MIR SINE MIR 41 146 -62 294 29 0 0 chr3 8460058 8460093 -219064485 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 373 59 0 chr3 8460131 8460233 -219064345 + L2 LINE L2 3151 3258 -14 1976 133 0 29 chr3 8460357 8460665 -219063913 - AluSx SINE Alu -13 299 1 350 228 60 92 chr3 8461367 8461551 -219063027 + MER5B DNA MER1_type 1 178 0 4236 158 44 31 chr3 8462886 8463798 -219060780 - L1MA9 LINE L1 -2 6310 5387 1092 132 114 9 chr3 8463796 8464023 -219060555 - L1PA15 LINE L1 0 6165 5915 * 557 198 0 16 chr3 8464021 8464142 -219060436 + L1P LINE L1 4527 4645 -1501 * 4127 151 20 35 chr3 8464155 8464873 -219059705 - L1PA15 LINE L1 -257 5908 5181 228 35 0 0 chr3 8464873 8464902 -219059676 + (TG)n Simple_repeat Simple_repeat 1 29 0 4127 151 20 35 chr3 8464902 8465714 -219058864 - L1PA15 LINE L1 -984 5181 4410 4896 214 20 7 chr3 8465724 8466887 -219057691 + L1P LINE L1 2995 4172 -1974 2158 147 57 22 chr3 8466888 8467401 -219057177 + MLT2A2 LTR ERVL 1 554 0 968 193 23 0 chr3 8467403 8467621 -219056957 + L1P LINE L1 4171 4393 -1753 * 3555 242 39 45 chr3 8467618 8468503 -219056075 - L1MA9 LINE L1 -748 5398 4509 1196 129 0 0 chr3 8468503 8468673 -219055905 - AluSq SINE Alu -11 302 133 3555 242 39 45 chr3 8468673 8468803 -219055775 - L1MA9 LINE L1 -1637 4509 4380 189 0 0 0 chr3 8468803 8468824 -219055754 + (TG)n Simple_repeat Simple_repeat 2 22 0 3555 242 39 45 chr3 8468824 8469851 -219054727 - L1MA9 LINE L1 -1766 4380 3293 1104 211 32 12 chr3 8469873 8470119 -219054459 + AluJo SINE Alu 61 311 -1 22 0 0 0 chr3 8470171 8470193 -219054385 + AT_rich Low_complexity Low_complexity 1 22 0 2427 76 0 0 chr3 8470193 8470496 -219054082 - AluY SINE Alu -8 303 1 384 235 53 8 chr3 8470728 8470860 -219053718 + MER113 DNA MER1_type? 1 138 -383 23 54 0 0 chr3 8470890 8470927 -219053651 + AT_rich Low_complexity Low_complexity 1 37 0 206 232 36 18 chr3 8474342 8474398 -219050180 - MIR SINE MIR -154 108 52 254 273 121 0 chr3 8474872 8474971 -219049607 - MLT1K LTR MaLR -106 482 372 1422 113 85 0 chr3 8475448 8475660 -219048918 + MER30 DNA MER1_type 1 230 0 436 299 17 69 chr3 8476787 8477018 -219047560 + MLT1G1 LTR MaLR 60 278 -317 920 112 11 28 chr3 8477154 8477332 -219047246 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 475 306 121 94 chr3 8477903 8478081 -219046497 - L2 LINE L2 0 3272 3100 1659 86 18 0 chr3 8478081 8478303 -219046275 + MER30 DNA MER1_type 5 230 0 475 306 121 94 chr3 8478303 8478907 -219045671 - L2 LINE L2 -172 3100 2430 2167 121 0 0 chr3 8478907 8479212 -219045366 + AluSc SINE Alu 1 305 0 475 306 121 94 chr3 8479212 8479501 -219045077 - L2 LINE L2 -842 2430 2150 21 36 0 0 chr3 8479593 8479621 -219044957 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 8480278 8480310 -219044268 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 2522 74 0 0 chr3 8481058 8481370 -219043208 - AluSx SINE Alu 0 312 1 225 0 0 0 chr3 8481702 8481727 -219042851 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 246 105 0 0 chr3 8481757 8481795 -219042783 + (A)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 8482045 8482074 -219042504 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 291 235 92 50 chr3 8482136 8482255 -219042323 - L2 LINE L2 -61 3252 3129 1313 287 85 29 chr3 8482300 8482729 -219041849 + L2 LINE L2 2462 2929 -384 2464 213 25 46 chr3 8482729 8483364 -219041214 + MLT1E3 LTR MaLR 1 622 -2 1313 287 85 29 chr3 8483364 8483499 -219041079 + L2 LINE L2 2929 3055 -258 1971 153 155 23 chr3 8483568 8484000 -219040578 - LTR45B LTR ERV1 0 489 1 336 309 9 36 chr3 8484190 8484300 -219040278 + L2 LINE L2 3173 3279 -34 348 387 61 21 chr3 8484322 8484610 -219039968 - L2 LINE L2 -219 3094 2785 1674 212 111 3 chr3 8484610 8484996 -219039582 + MSTA LTR MaLR 1 428 0 348 387 61 21 chr3 8484996 8485063 -219039515 - L2 LINE L2 -528 2785 2722 223 295 49 0 chr3 8485371 8485432 -219039146 + L2 LINE L2 3228 3291 -22 281 325 145 30 chr3 8485501 8485701 -219038877 + MIR SINE MIR 40 262 0 2854 65 17 12 chr3 8485818 8486220 -219038358 - MLT2A1 LTR ERVL -40 404 1 2377 67 0 7 chr3 8486232 8486530 -219038048 - AluY SINE Alu -15 296 1 24 0 0 0 chr3 8487608 8487632 -219036946 + AT_rich Low_complexity Low_complexity 1 24 0 288 319 115 44 chr3 8487904 8488086 -219036492 - LTR16C LTR ERVL -9 482 288 272 164 0 36 chr3 8488975 8489030 -219035548 - MIR SINE MIR -98 164 112 838 179 48 42 chr3 8489039 8489207 -219035371 - MER5A DNA MER1_type -20 169 1 201 292 186 9 chr3 8489259 8489372 -219035206 + L2 LINE L2 3134 3266 -6 282 244 108 114 chr3 8489983 8490159 -219034419 + MER5B DNA MER1_type 4 178 0 1097 181 67 99 chr3 8490167 8490321 -219034257 - MER58B DNA MER1_type -2079 341 184 1852 156 54 23 chr3 8490321 8490674 -219033904 - THE1B LTR MaLR 0 364 1 10896 103 35 0 chr3 8490674 8492201 -219032377 - THE1B-int LTR MaLR 0 1580 1 1879 154 78 23 chr3 8492201 8492546 -219032032 - THE1B LTR MaLR 0 364 1 1097 181 67 99 chr3 8492546 8492731 -219031847 - MER58B DNA MER1_type -2233 187 11 1140 164 37 85 chr3 8494128 8494518 -219030060 - MLT1A1 LTR MaLR -4 392 1 1637 212 113 42 chr3 8495389 8495893 -219028685 - MLT1F LTR MaLR 0 542 3 341 277 63 19 chr3 8496235 8496394 -219028184 - L1ME LINE L1 -570 5551 5386 22 0 0 0 chr3 8496507 8496529 -219028049 + AT_rich Low_complexity Low_complexity 1 22 0 1948 158 43 3 chr3 8497740 8498087 -219026491 + MER46B DNA MER2_type 1 236 0 187 237 68 93 chr3 8498595 8498713 -219025865 + MIR SINE MIR 147 261 -1 234 105 0 0 chr3 8499434 8499472 -219025106 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 261 11 11 chr3 8499802 8499894 -219024684 - MLT1I LTR MaLR -8 401 310 248 181 28 17 chr3 8500625 8500697 -219023881 - MLT1J1 LTR MaLR -328 118 45 566 134 0 0 chr3 8500798 8500895 -219023683 - L1P LINE L1 -1389 4757 4661 3490 65 0 0 chr3 8500895 8501378 -219023200 + L1PA8 LINE L1 5691 6173 0 560 255 108 28 chr3 8501880 8502092 -219022486 + MIR SINE MIR 34 262 0 180 111 0 0 chr3 8502249 8502276 -219022302 + (CCA)n Simple_repeat Simple_repeat 1 27 0 349 121 69 0 chr3 8502289 8502347 -219022231 + ERVL LTR ERVL 4862 4923 -841 309 26 0 0 chr3 8502352 8502390 -219022188 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 75 25 0 chr3 8502517 8502557 -219022021 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 282 9 0 chr3 8502703 8502813 -219021765 + (TA)n Simple_repeat Simple_repeat 1 111 0 1591 231 5 21 chr3 8502815 8503192 -219021386 - MLT2D LTR ERVL -43 371 1 760 192 0 30 chr3 8503192 8503359 -219021219 - ERVL-D LTR ERVL -7 5757 5596 288 158 0 0 chr3 8503359 8503416 -219021162 + (TA)n Simple_repeat Simple_repeat 1 57 0 180 158 0 0 chr3 8503466 8503504 -219021074 + (TA)n Simple_repeat Simple_repeat 1 38 0 271 255 108 20 chr3 8503615 8503717 -219020861 - MIR SINE MIR -60 202 92 210 71 0 0 chr3 8503811 8503839 -219020739 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1977 173 32 28 chr3 8505809 8506357 -219018221 - MLT2A2 LTR ERVL 0 554 2 1949 91 22 0 chr3 8507051 8507326 -219017252 + L1PA10 LINE L1 5879 6159 -9 396 0 0 0 chr3 8507327 8507371 -219017207 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 8507399 8507429 -219017149 + AT_rich Low_complexity Low_complexity 1 30 0 738 243 117 73 chr3 8507507 8507900 -219016678 + MLT1D LTR MaLR 2 421 -84 2110 141 33 25 chr3 8507900 8508261 -219016317 + THE1B LTR MaLR 1 364 0 738 243 117 73 chr3 8508261 8508345 -219016233 + MLT1D LTR MaLR 421 500 -5 245 376 9 9 chr3 8508504 8508613 -219015965 - L2 LINE L2 -15 3298 3190 31 26 0 0 chr3 8509253 8509291 -219015287 + AT_rich Low_complexity Low_complexity 1 38 0 2409 46 0 3 chr3 8509784 8510101 -219014477 - AluY SINE Alu 0 316 1 216 308 13 13 chr3 8511624 8511702 -219012876 + CT-rich Low_complexity Low_complexity 2 79 0 498 254 65 72 chr3 8511796 8512335 -219012243 + L1ME3 LINE L1 4456 4990 -1156 354 281 102 10 chr3 8512434 8512630 -219011948 + L1ME3 LINE L1 5119 5332 -814 2120 138 3 3 chr3 8512677 8512989 -219011589 + AluSx SINE Alu 1 312 0 3292 165 78 44 chr3 8513047 8513888 -219010690 + L1MC3 LINE L1 6908 7777 -8 412 265 137 24 chr3 8514016 8514314 -219010264 + L1ME3 LINE L1 5560 5894 -276 608 191 0 17 chr3 8514660 8514775 -219009803 - FLAM_A SINE Alu -19 114 2 206 226 129 43 chr3 8515994 8516087 -219008491 - L2 LINE L2 -5 3308 3208 523 299 114 0 chr3 8516130 8516297 -219008281 + MIR SINE MIR 49 234 -28 199 188 0 0 chr3 8516397 8516429 -219008149 - MIR SINE MIR -16 246 215 2155 159 55 26 chr3 8517523 8517939 -219006639 - MSTC LTR MaLR 0 428 1 568 279 128 11 chr3 8517939 8518118 -219006460 - MIR SINE MIR -4 258 59 2614 108 59 16 chr3 8518287 8518645 -219005933 + MLT2A1 LTR ERVL 1 342 -102 321 26 0 0 chr3 8518645 8518683 -219005895 + (TC)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 8518682 8518703 -219005875 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2614 108 59 16 chr3 8518683 8518770 -219005808 + MLT2A1 LTR ERVL 342 444 0 305 23 0 23 chr3 8518783 8518826 -219005752 + (TA)n Simple_repeat Simple_repeat 2 43 0 314 88 18 18 chr3 8518873 8518930 -219005648 + MLT2B1 LTR ERVL 464 520 0 27641 70 11 5 chr3 8518930 8522639 -219001939 + HERVL-B1-A1 LTR ERVL 1 3731 -1923 3949 134 176 28 chr3 8522639 8523626 -219000952 + MER11B LTR ERVK 1 1232 -4 14487 69 7 4 chr3 8523631 8525554 -218999024 + HERVL-B1-A1 LTR ERVL 3726 5654 0 1255 110 46 5 chr3 8525554 8525773 -218998805 + MLT2A1 LTR ERVL 1 228 -216 508 90 13 0 chr3 8525773 8525851 -218998727 + L1PA16 LINE L1 6079 6157 -9 323 291 57 19 chr3 8526757 8526915 -218997663 + MLT1K LTR MaLR 354 517 -71 22 70 0 0 chr3 8527413 8527456 -218997122 + AT_rich Low_complexity Low_complexity 1 43 0 394 241 143 0 chr3 8527504 8527637 -218996941 + MER103 DNA DNA 13 164 -2 213 291 121 21 chr3 8527758 8527899 -218996679 + MIR SINE MIR 72 226 -36 417 54 0 0 chr3 8528042 8528098 -218996480 + (CA)n Simple_repeat Simple_repeat 1 56 0 420 306 65 18 chr3 8529319 8529493 -218995085 - MIR SINE MIR -62 146 3 189 0 0 0 chr3 8530948 8530969 -218993609 + (CA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr3 8531546 8531580 -218992998 + AT_rich Low_complexity Low_complexity 1 34 0 6479 48 0 0 chr3 8531580 8532400 -218992178 - L1PA5 LINE L1 -6 6148 5329 372 316 90 11 chr3 8533857 8534034 -218990544 - MIR SINE MIR -56 206 16 1227 217 126 7 chr3 8534247 8534556 -218990022 - MSTD LTR MaLR -50 346 1 723 251 108 35 chr3 8534925 8535267 -218989311 + MER110A LTR ERV1 40 406 -62 23595 134 52 50 chr3 8535305 8540161 -218984417 - L1P LINE L1 -1268 4878 12 1083 146 25 33 chr3 8540297 8540537 -218984041 - THE1C LTR MaLR -2 373 136 29333 132 17 55 chr3 8540537 8546520 -218978058 - L1P3 LINE L1 -401 5753 13 9280 142 24 27 chr3 8546516 8548052 -218976526 - THE1C-int LTR MaLR -51 1684 1 * 1697 160 26 50 chr3 8548054 8548436 -218976142 - THE1C LTR MaLR -2 373 1 495 0 0 0 chr3 8548692 8548747 -218975831 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 8548809 8548830 -218975748 + AT_rich Low_complexity Low_complexity 1 21 0 1018 253 0 0 chr3 8549044 8549265 -218975313 + MER58A DNA MER1_type 1 221 -3 238 243 157 0 chr3 8549278 8549369 -218975209 + MER5A DNA MER1_type 4 112 -77 276 250 11 11 chr3 8551367 8551455 -218973123 + MLT1J1 LTR MaLR 341 428 -18 191 188 83 0 chr3 8551793 8551841 -218972737 + L2 LINE L2 3221 3272 0 208 254 0 70 chr3 8552750 8552821 -218971757 + MIR SINE MIR 197 262 0 635 318 102 27 chr3 8553207 8553751 -218970827 - L2 LINE L2 0 3313 2730 517 304 44 0 chr3 8554700 8554881 -218969697 - MER5A DNA MER1_type 0 189 1 1848 263 33 44 chr3 8555802 8555855 -218968723 + L1MA8 LINE L1 466 518 -6971 180 0 0 0 chr3 8555855 8555875 -218968703 + (CA)n Simple_repeat Simple_repeat 1 20 0 1848 263 33 44 chr3 8555875 8556423 -218968155 + L1MA8 LINE L1 518 2068 -5421 1856 244 31 30 chr3 8556477 8557254 -218967324 + L1MA8 LINE L1 2018 2763 -4802 * 2840 208 48 37 chr3 8557246 8557435 -218967143 + L1MA8 LINE L1 3636 3821 -3744 2621 163 45 60 chr3 8557435 8558056 -218966522 + LTR9 LTR ERV1 1 612 0 2840 208 48 37 chr3 8558056 8558696 -218965882 + L1MA8 LINE L1 3821 4474 -3091 3320 174 17 8 chr3 8558699 8559298 -218965280 - MER50 LTR ERV1 -20 714 111 960 187 38 8 chr3 8559309 8559571 -218965007 - L1 LINE L1 -2813 3333 3064 317 238 0 40 chr3 8559572 8559673 -218964905 + MER50 LTR ERV1 1 97 -637 10123 173 24 27 chr3 8559682 8562747 -218961831 + L1MA8 LINE L1 4657 7709 -1 268 219 0 184 chr3 8562860 8562974 -218961604 + MER63 DNA MER1_type 2 720 -342 617 234 83 5 chr3 8563036 8563228 -218961350 + MER63 DNA MER1_type 836 1042 -18 912 306 62 12 chr3 8563228 8563646 -218960932 - LTR16B LTR ERVL -23 441 3 1955 185 55 47 chr3 8563906 8564328 -218960250 - MSTB LTR MaLR 0 426 2 938 279 20 8 chr3 8564922 8565173 -218959405 + MIR SINE MIR 1 254 -8 273 57 0 0 chr3 8565174 8565209 -218959369 + (CAT)n Simple_repeat Simple_repeat 1 35 0 222 329 24 24 chr3 8566472 8566554 -218958024 + MIR SINE MIR 11 92 -170 246 216 196 41 chr3 8567141 8567238 -218957340 - MLT1K LTR MaLR -326 262 151 23 0 0 0 chr3 8567992 8568015 -218956563 + AT_rich Low_complexity Low_complexity 1 23 0 240 344 96 24 chr3 8569329 8569454 -218955124 + MER5A DNA MER1_type 34 167 -22 494 299 123 25 chr3 8570140 8570668 -218953910 + HAL1 LINE L1 735 1314 -1193 1139 292 73 41 chr3 8570847 8571669 -218952909 + HAL1 LINE L1 1627 2474 -33 2289 214 49 43 chr3 8572278 8572833 -218951745 - MER74A LTR ERVL 0 558 1 288 303 115 8 chr3 8573304 8573426 -218951152 - MER117 DNA MER1_type -29 168 34 249 336 79 58 chr3 8573474 8573715 -218950863 - L2 LINE L2 -202 3070 2825 371 240 41 18 chr3 8573724 8573895 -218950683 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 73 0 0 chr3 8573900 8573955 -218950623 + AT_rich Low_complexity Low_complexity 1 55 0 566 289 27 0 chr3 8574008 8574157 -218950421 - MIR SINE MIR -108 154 2 350 300 64 27 chr3 8575478 8575588 -218948990 + L2 LINE L2 3139 3252 -20 200 182 0 0 chr3 8575806 8575839 -218948739 + (CAAAG)n Simple_repeat Simple_repeat 4 36 0 386 167 77 13 chr3 8576047 8576125 -218948453 - LTR54 LTR ERV1 -427 83 1 658 235 109 53 chr3 8576363 8576418 -218948160 + MER5C DNA MER1_type 6 56 -268 5393 48 31 3 chr3 8576418 8577119 -218947459 + LTR30 LTR ERV1 1 721 -1 658 235 109 53 chr3 8577119 8577365 -218947213 + MER5C DNA MER1_type 56 324 0 248 0 31 0 chr3 8577417 8577449 -218947129 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2100 79 0 0 chr3 8577785 8578092 -218946486 - AluY SINE Alu 0 307 1 265 341 53 8 chr3 8578389 8578521 -218946057 - MIR SINE MIR -6 256 119 25 65 0 0 chr3 8578774 8578820 -218945758 + AT_rich Low_complexity Low_complexity 1 46 0 595 213 0 31 chr3 8578820 8578947 -218945631 - AluJb SINE Alu -189 123 1 964 246 5 5 chr3 8578949 8579160 -218945418 - MER58A DNA MER1_type -10 214 4 1295 153 60 0 chr3 8581079 8581294 -218943284 + MER30 DNA MER1_type 3 230 0 287 395 0 0 chr3 8581308 8581442 -218943136 + MIR SINE MIR 31 164 -98 246 243 90 54 chr3 8581941 8582052 -218942526 - MLT1J2 LTR MaLR -302 148 34 761 163 0 0 chr3 8582101 8582224 -218942354 + FLAM_C SINE Alu 1 123 -20 903 229 25 4 chr3 8583055 8583295 -218941283 - L1MA4 LINE L1 -5 6295 6051 198 338 38 0 chr3 8583351 8583431 -218941147 + L2 LINE L2 3231 3313 0 709 260 105 47 chr3 8583545 8583841 -218940737 - MLT1I LTR MaLR -95 314 2 242 262 0 39 chr3 8584503 8584606 -218939972 + CT-rich Low_complexity Low_complexity 3 101 0 188 282 39 64 chr3 8584646 8584724 -218939854 - L2 LINE L2 -19 3294 3219 280 336 69 30 chr3 8585249 8585380 -218939198 - L2 LINE L2 0 3272 3137 1454 141 0 4 chr3 8585595 8585836 -218938742 - L1MA4 LINE L1 -5 6295 6056 1018 276 22 63 chr3 8585939 8586065 -218938513 - L1ME3A LINE L1 -5 6165 6035 2311 41 7 3 chr3 8586065 8586357 -218938221 + AluY SINE Alu 1 293 -18 1018 276 22 63 chr3 8586357 8586675 -218937903 - L1ME3A LINE L1 -135 6035 5739 368 232 108 77 chr3 8586707 8586966 -218937612 - MER113 DNA MER1_type? -236 285 19 283 306 194 11 chr3 8587444 8587528 -218937050 - MIR SINE MIR -18 244 177 1373 207 107 52 chr3 8587528 8588007 -218936571 + MLT1D LTR MaLR 1 505 0 283 306 194 11 chr3 8588007 8588108 -218936470 - MIR SINE MIR -85 177 25 488 264 54 86 chr3 8588319 8588633 -218935945 - MLT1K LTR MaLR -24 564 261 304 304 0 49 chr3 8589748 8589850 -218934728 - MIR3 SINE MIR -45 163 67 391 336 17 0 chr3 8589946 8590065 -218934513 + L2 LINE L2 3184 3304 -9 438 324 105 5 chr3 8591262 8591481 -218933097 + MIR SINE MIR 16 256 -6 295 309 9 45 chr3 8592149 8592259 -218932319 - L2 LINE L2 -5 3308 3203 * 694 290 42 9 chr3 8592238 8592455 -218932123 - MIR SINE MIR -2 260 37 209 336 112 14 chr3 8592715 8592858 -218931720 + MIR SINE MIR 100 256 -6 21 36 0 0 chr3 8594680 8594708 -218929870 + AT_rich Low_complexity Low_complexity 1 28 0 2605 39 0 3 chr3 8594800 8595105 -218929473 + AluY SINE Alu 1 304 -7 327 49 0 0 chr3 8595597 8595638 -218928940 + (TG)n Simple_repeat Simple_repeat 2 42 0 1071 207 9 26 chr3 8596272 8596499 -218928079 + MER58A DNA MER1_type 1 223 -1 216 291 13 25 chr3 8596961 8597040 -218927538 + MIR3 SINE MIR 122 199 -9 818 201 4 107 chr3 8598205 8598449 -218926129 + MER20 DNA MER1_type 1 219 0 332 268 108 56 chr3 8599746 8599910 -218924668 - MIR3 SINE MIR -15 193 20 395 173 12 0 chr3 8599978 8600059 -218924519 + MER53 DNA DNA 101 182 -7 489 223 236 0 chr3 8600874 8601031 -218923547 + MIR SINE MIR 14 207 -55 2319 83 0 10 chr3 8601332 8601632 -218922946 + AluSc SINE Alu 1 297 -12 261 329 12 0 chr3 8601641 8601726 -218922852 + L2 LINE L2 3182 3267 -5 1041 256 78 43 chr3 8602853 8603224 -218921354 + MLT1I LTR MaLR 26 409 0 249 384 0 0 chr3 8603938 8604037 -218920541 + MIR SINE MIR 52 150 -112 191 349 39 29 chr3 8605300 8605410 -218919168 + MIR SINE MIR 16 127 -81 998 217 109 29 chr3 8605476 8605789 -218918789 - MER58B DNA MER1_type -3 338 1 398 284 71 13 chr3 8605819 8605974 -218918604 + MLT1J2 LTR MaLR 287 450 0 285 338 40 15 chr3 8606850 8607046 -218917532 + MIR SINE MIR 7 206 -56 272 155 14 0 chr3 8607173 8607244 -218917334 + CT-rich Low_complexity Low_complexity 1 72 0 375 73 0 0 chr3 8607248 8607303 -218917275 + (CA)n Simple_repeat Simple_repeat 2 56 0 2390 257 51 16 chr3 8608251 8609001 -218915577 + MER20B DNA MER1_type 8 783 0 425 367 87 31 chr3 8609257 8609546 -218915032 - L3 LINE CR1 -7 1570 1266 376 374 92 18 chr3 8610049 8610439 -218914139 + L2 LINE L2 2892 3310 -3 184 291 255 7 chr3 8610528 8610669 -218913909 - L3 LINE CR1 -330 1247 1072 7651 23 0 4 chr3 8610824 8611850 -218912728 - L1PA4 LINE L1 -2 6153 5128 234 333 0 0 chr3 8612454 8612520 -218912058 - MER117 DNA MER1_type -8 189 124 272 326 109 42 chr3 8613588 8613781 -218910797 - MIR SINE MIR -14 248 43 264 380 78 14 chr3 8614040 8614182 -218910396 - L2 LINE L2 -5 3267 3117 1027 81 5 38 chr3 8614735 8614741 -218909837 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1027 81 5 38 chr3 8614741 8614927 -218909651 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1909 164 10 6 chr3 8615334 8615645 -218908933 + AluSx SINE Alu 1 312 0 394 195 46 0 chr3 8615721 8615808 -218908770 - MLT1H LTR MaLR -1 548 458 687 282 29 31 chr3 8615885 8616169 -218908409 - MLT1H LTR MaLR -222 327 1 290 163 24 171 chr3 8617215 8617338 -218907240 - L2 LINE L2 -5 3308 3204 296 53 0 0 chr3 8617992 8618030 -218906548 + U3 snRNA snRNA 1 38 -179 537 308 51 40 chr3 8618205 8618458 -218906120 - MIR SINE MIR -5 257 2 225 179 0 89 chr3 8618523 8618579 -218905999 + MIR SINE MIR 103 153 -109 210 71 0 0 chr3 8618971 8618999 -218905579 + (TG)n Simple_repeat Simple_repeat 1 28 0 800 134 12 18 chr3 8619065 8619229 -218905349 + CT-rich Low_complexity Low_complexity 4 166 0 1544 169 19 8 chr3 8619233 8619493 -218905085 - AluJb SINE Alu -38 274 12 911 288 58 27 chr3 8619892 8620184 -218904394 + L3 LINE CR1 1166 1466 -111 566 335 162 34 chr3 8620445 8620511 -218904067 + L2 LINE L2 2054 2110 -1204 1847 187 12 0 chr3 8620511 8620854 -218903724 - MER7A DNA MER2_type -1 345 1 566 335 162 34 chr3 8620854 8621342 -218903236 + L2 LINE L2 2110 2679 -635 223 379 92 15 chr3 8621467 8621856 -218902722 + L2 LINE L2 2687 3142 -171 359 322 94 35 chr3 8622022 8622224 -218902354 + MIR SINE MIR 13 226 -36 349 294 22 0 chr3 8622396 8622488 -218902090 + L1M4 LINE L1 707 800 -5742 4986 227 81 53 chr3 8622887 8624537 -218900041 + L1MB7 LINE L1 -248 1447 -4833 731 250 66 19 chr3 8624561 8624796 -218899782 + L1MB7 LINE L1 1594 1813 -4571 4284 222 42 11 chr3 8624888 8625933 -218898645 + L1MB7 LINE L1 4387 5519 -901 2529 145 33 9 chr3 8625933 8626354 -218898224 - Tigger2a DNA MER2_type -3 431 1 4284 222 42 11 chr3 8626354 8627155 -218897423 + L1MB7 LINE L1 5519 6293 -127 572 270 104 26 chr3 8627592 8627822 -218896756 - MLT1L LTR MaLR 0 615 368 426 20 0 0 chr3 8627979 8628030 -218896548 + (TG)n Simple_repeat Simple_repeat 2 52 0 219 273 0 0 chr3 8629814 8629869 -218894709 + (TA)n Simple_repeat Simple_repeat 1 55 0 1476 211 19 14 chr3 8629931 8630296 -218894282 + L1MB8 LINE L1 5811 6177 -1 252 0 0 0 chr3 8631098 8631126 -218893452 + (T)n Simple_repeat Simple_repeat 1 28 0 331 332 109 31 chr3 8631145 8631338 -218893240 - MER102b DNA MER1_type -6 335 128 234 311 133 0 chr3 8632010 8632100 -218892478 - MIR3 SINE MIR -93 115 14 3800 117 21 54 chr3 8635604 8636305 -218888273 + L1MA5A LINE L1 5619 6296 -1 4443 80 173 49 chr3 8636474 8637209 -218887369 - LTR12 LTR ERV1 0 826 1 442 0 0 33 chr3 8637380 8637440 -218887138 + (TA)n Simple_repeat Simple_repeat 2 59 0 1614 196 0 16 chr3 8637728 8638040 -218886538 + AluJo SINE Alu 1 307 -5 602 131 0 0 chr3 8638191 8638275 -218886303 - LTR12 LTR ERV1 -151 563 480 313 297 17 0 chr3 8638275 8638393 -218886185 - LTR30 LTR ERV1 -79 643 524 850 57 205 0 chr3 8638393 8638515 -218886063 - LTR12 LTR ERV1 -456 258 112 329 299 18 18 chr3 8638515 8638719 -218885859 + (TA)n Simple_repeat Simple_repeat 1 204 0 4392 32 2 2 chr3 8638815 8639310 -218885268 - SVA Other Other -17 1369 875 575 255 134 89 chr3 8639321 8639574 -218885004 + L1MC5 LINE L1 6711 6951 -1010 360 0 0 0 chr3 8639574 8639614 -218884964 + (TG)n Simple_repeat Simple_repeat 1 40 0 575 255 134 89 chr3 8639614 8639866 -218884712 + L1MC5 LINE L1 6951 7239 -722 2366 172 73 36 chr3 8639914 8640501 -218884077 - L1MB7 LINE L1 -20 6164 5556 741 241 42 31 chr3 8640489 8640750 -218883828 + L1MC5 LINE L1 7268 7531 -430 * 1648 141 84 0 chr3 8640755 8640944 -218883634 - AluSx SINE Alu 0 333 110 216 0 0 0 chr3 8640944 8640968 -218883610 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1648 141 84 0 chr3 8640968 8641089 -218883489 - AluSx SINE Alu -223 110 1 2644 153 47 10 chr3 8641404 8641889 -218882689 - L1MC1 LINE L1 -9 6324 5822 23 33 0 0 chr3 8642143 8642173 -218882405 + AT_rich Low_complexity Low_complexity 1 30 0 276 316 153 20 chr3 8642940 8643241 -218881337 + MLT1H LTR MaLR 22 362 -187 249 229 0 0 chr3 8643289 8643337 -218881241 + MLT1H LTR MaLR 501 548 -1 253 369 34 45 chr3 8643359 8643535 -218881043 + L2 LINE L2 2931 3104 -168 210 215 141 89 chr3 8643667 8643802 -218880776 + MIR SINE MIR 121 262 0 895 225 63 106 chr3 8643859 8644380 -218880198 - L1MC5 LINE L1 -838 7123 6625 3712 180 12 8 chr3 8644381 8645114 -218879464 - L1MA8 LINE L1 -3 6288 5553 1085 207 152 30 chr3 8645479 8645953 -218878625 - L1MC5 LINE L1 -302 7659 7128 266 167 167 67 chr3 8645978 8646068 -218878510 + L1MC5 LINE L1 6930 7028 -933 182 307 132 44 chr3 8646299 8646413 -218878165 + L2 LINE L2 3172 3295 -18 252 130 0 0 chr3 8647253 8647299 -218877279 + (TATG)n Simple_repeat Simple_repeat 1 46 0 293 306 131 45 chr3 8649124 8649323 -218875255 + MIR SINE MIR 2 217 -45 295 150 340 0 chr3 8649890 8649990 -218874588 + MER103 DNA DNA 18 151 -15 513 267 22 15 chr3 8650010 8650145 -218874433 - MIR SINE MIR -5 257 122 306 68 0 0 chr3 8651300 8651344 -218873234 - L1PA8 LINE L1 -4 6168 6125 306 167 22 11 chr3 8652208 8652298 -218872280 + (TA)n Simple_repeat Simple_repeat 2 92 0 3598 181 16 68 chr3 8654105 8654954 -218869624 + Tigger6a DNA MER2_type 1 805 -278 3374 191 37 4 chr3 8654970 8655678 -218868900 - L1MD1 LINE L1 -7 6629 5899 3027 254 24 41 chr3 8655685 8656340 -218868238 - L1MD1 LINE L1 -1602 4938 4312 5445 18 0 2 chr3 8656340 8656963 -218867615 - L1PA3 LINE L1 0 6155 5534 3027 254 24 41 chr3 8656963 8657545 -218867033 - L1MD1 LINE L1 -2228 4312 3722 * 5805 218 63 31 chr3 8657540 8659758 -218864820 - L1MD1 LINE L1 -4009 2531 18 1065 177 55 19 chr3 8659761 8660032 -218864546 + Tigger6a DNA MER2_type 803 1083 0 196 368 58 0 chr3 8660115 8660202 -218864376 - L2 LINE L2 -33 3280 3189 286 321 18 0 chr3 8660462 8660571 -218864007 - MIR SINE MIR -58 204 94 362 365 207 22 chr3 8660965 8661327 -218863251 + L2 LINE L2 2836 3264 -8 373 288 54 9 chr3 8662896 8663007 -218861571 + L2 LINE L2 3193 3308 -5 206 62 31 0 chr3 8663010 8663042 -218861536 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 299 318 80 66 chr3 8663325 8663674 -218860904 + L3 LINE CR1 1199 1552 -25 300 91 0 0 chr3 8664137 8664181 -218860397 + (TC)n Simple_repeat Simple_repeat 1 44 0 243 306 0 14 chr3 8664181 8664253 -218860325 + MIR SINE MIR 189 259 -3 299 322 43 9 chr3 8665160 8665275 -218859303 + MIR3 SINE MIR 82 200 -8 225 94 0 0 chr3 8666608 8666640 -218857938 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 432 151 226 0 chr3 8666640 8666746 -218857832 - L1MB4 LINE L1 -95 6085 5956 192 443 0 0 chr3 8666912 8667000 -218857578 + L2 LINE L2 3162 3249 -23 24 0 0 0 chr3 8668179 8668203 -218856375 + AT_rich Low_complexity Low_complexity 1 24 0 216 267 0 0 chr3 8668570 8668615 -218855963 + MIR SINE MIR 29 73 -135 1586 241 28 19 chr3 8669540 8669972 -218854606 - MER110 LTR ERV1 -4 487 52 860 181 7 7 chr3 8670796 8670945 -218853633 - FRAM SINE Alu -30 146 1 539 282 6 28 chr3 8671889 8672070 -218852508 - MER5B DNA MER1_type -1 177 1 360 320 53 8 chr3 8672240 8672374 -218852204 - MIR SINE MIR -66 142 34 2050 139 53 11 chr3 8674055 8674415 -218850163 + THE1C LTR MaLR 1 375 0 203 387 43 0 chr3 8675726 8675819 -218848759 + MIR3 SINE MIR 63 159 -49 309 341 73 8 chr3 8675903 8676071 -218848507 - MIR SINE MIR -61 147 10 3327 110 47 4 chr3 8676438 8676928 -218847650 - MER9 LTR ERVK 0 511 1 680 314 65 14 chr3 8676935 8677225 -218847353 - MLT1K LTR MaLR -15 573 269 2208 123 16 21 chr3 8677961 8678334 -218846244 + THE1C LTR MaLR 1 371 -4 212 304 14 0 chr3 8678363 8678432 -218846146 - L2 LINE L2 -1 3271 3202 509 307 46 55 chr3 8679011 8679229 -218845349 - MIR SINE MIR -29 233 18 1650 193 24 24 chr3 8679666 8680075 -218844503 + L1MA10 LINE L1 5924 6332 -2 1857 86 0 0 chr3 8680107 8680365 -218844213 + AluY SINE Alu 50 307 0 1036 198 231 41 chr3 8680918 8681307 -218843271 + MLT2B1 LTR ERVL 6 534 -20 189 0 0 0 chr3 8681354 8681375 -218843203 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 343 0 27 chr3 8682566 8682639 -218841939 + MIR SINE MIR 33 103 -105 180 0 0 0 chr3 8683208 8683228 -218841350 + (T)n Simple_repeat Simple_repeat 1 20 0 276 179 119 15 chr3 8683349 8683416 -218841162 + MLT1I LTR MaLR 336 409 0 230 282 0 137 chr3 8683739 8683863 -218840715 - MER5B DNA MER1_type -3 175 69 584 292 12 6 chr3 8683901 8684069 -218840509 + MIR SINE MIR 93 261 -1 187 270 43 61 chr3 8684174 8684289 -218840289 + L2 LINE L2 3184 3296 -17 4306 36 0 2 chr3 8684976 8685498 -218839080 - L1PA4 LINE L1 -6 6149 5629 10891 31 1 1 chr3 8685498 8686821 -218837757 + L1P LINE L1 4035 5358 -788 540 226 123 7 chr3 8687170 8687316 -218837262 - MER58B DNA MER1_type -4 337 175 25 31 0 0 chr3 8687925 8687957 -218836621 + AT_rich Low_complexity Low_complexity 1 32 0 366 226 0 43 chr3 8688106 8688199 -218836379 - L1MC4 LINE L1 -1340 6702 6614 530 303 142 43 chr3 8689876 8690597 -218833981 - L2 LINE L2 -111 3202 2360 675 296 186 31 chr3 8691422 8691841 -218832737 - MLT1G1 LTR MaLR -36 559 76 1629 148 21 4 chr3 8691914 8692328 -218832250 + L1PA16 LINE L1 5117 5539 -627 1793 133 81 27 chr3 8692328 8692660 -218831918 + L1PA16 LINE L1 5807 6156 -10 269 377 15 8 chr3 8693723 8693853 -218830725 + L2 LINE L2 2238 2368 -946 1027 277 65 34 chr3 8693888 8694332 -218830246 + MLT1C LTR MaLR 10 467 0 451 355 77 31 chr3 8694386 8694738 -218829840 + L2 LINE L2 2480 2847 -467 4988 204 43 19 chr3 8694741 8696741 -218827837 - L1MC2 LINE L1 -10 6334 4295 610 162 8 0 chr3 8696845 8696962 -218827616 - L1MB3 LINE L1 -19 6164 6047 2573 52 0 0 chr3 8696963 8697272 -218827306 - AluY SINE Alu -2 309 1 2027 182 84 25 chr3 8697281 8697759 -218826819 - L1MB3 LINE L1 -1 6182 5677 188 314 20 0 chr3 8698135 8698186 -218826392 + L2 LINE L2 2541 2592 -722 554 154 103 45 chr3 8698356 8698462 -218826116 - L1MCb LINE L1 -4103 2461 2342 1002 211 63 89 chr3 8698462 8698845 -218825733 + MLT1A2 LTR MaLR 1 373 -1 554 154 103 45 chr3 8698845 8698894 -218825684 - L1MCb LINE L1 -4222 2342 2297 5164 179 31 10 chr3 8698904 8700227 -218824351 - L1PA16 LINE L1 0 6166 4810 2307 155 22 89 chr3 8700229 8700821 -218823757 + L1PA16 LINE L1 4265 4816 -1330 * 2832 216 101 56 chr3 8700811 8701001 -218823577 - L1MCb LINE L1 -4260 2304 2124 1860 136 25 0 chr3 8701001 8701309 -218823269 + AluSq SINE Alu 1 315 0 2832 216 101 56 chr3 8701309 8701543 -218823035 - L1MCb LINE L1 -4440 2124 1902 637 54 0 21 chr3 8701543 8701636 -218822942 - L1PA8 LINE L1 0 6172 6082 2832 216 101 56 chr3 8701636 8703337 -218821241 - L1MCb LINE L1 -4662 1902 3 223 345 0 62 chr3 8703390 8703478 -218821100 + L2 LINE L2 2868 2949 -364 3199 138 53 0 chr3 8703478 8704029 -218820549 + LTR19B LTR ERV1 1 580 0 223 345 0 62 chr3 8704029 8704053 -218820525 + L2 LINE L2 2949 2973 -340 184 295 156 8 chr3 8704168 8704290 -218820288 + L2 LINE L2 3144 3283 -30 27 29 0 0 chr3 8705846 8705880 -218818698 + AT_rich Low_complexity Low_complexity 1 34 0 195 129 0 0 chr3 8706400 8706431 -218818147 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1635 57 0 0 chr3 8706503 8706696 -218817882 + AluY SINE Alu 110 302 -9 1057 224 23 0 chr3 8707017 8707236 -218817342 - MER58A DNA MER1_type 0 224 1 638 214 53 78 chr3 8707246 8707452 -218817126 - MER3 DNA MER1_type -1 208 8 281 224 0 53 chr3 8707660 8707736 -218816842 + MIR SINE MIR 112 183 -79 470 362 25 5 chr3 8707836 8708035 -218816543 + MIR SINE MIR 42 244 -18 21 0 0 0 chr3 8708150 8708171 -218816407 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 22 44 chr3 8708634 8708724 -218815854 + MER81 DNA DNA 27 114 0 1552 175 22 56 chr3 8708889 8709209 -218815369 + AluJo SINE Alu 1 309 -3 268 163 82 0 chr3 8709647 8709696 -218814882 - MER5B DNA MER1_type -3 175 123 2575 102 66 31 chr3 8709704 8709871 -218814707 + L1PA10 LINE L1 5730 5890 -278 2243 114 0 3 chr3 8709871 8710177 -218814401 + AluSg SINE Alu 1 305 -5 2575 102 66 31 chr3 8710177 8710432 -218814146 + L1PA10 LINE L1 5890 6167 -1 331 357 16 8 chr3 8710514 8710643 -218813935 - MER5B DNA MER1_type -48 130 1 264 30 0 0 chr3 8710675 8710708 -218813870 + (CA)n Simple_repeat Simple_repeat 1 33 0 226 275 116 0 chr3 8710716 8710785 -218813793 + MIR SINE MIR 39 115 -93 1837 151 48 12 chr3 8712276 8712607 -218811971 + MER2 DNA MER2_type 2 344 0 543 194 73 0 chr3 8714867 8714991 -218809587 - L1MA9 LINE L1 0 6312 6180 2293 102 0 0 chr3 8715017 8715320 -218809258 + AluSc SINE Alu 1 303 -6 263 317 41 8 chr3 8715348 8715471 -218809107 + MIR SINE MIR 136 262 0 2123 70 0 3 chr3 8716336 8716623 -218807955 - L1PA5 LINE L1 0 6154 5869 576 221 8 31 chr3 8717809 8717936 -218806642 + MER21B LTR ERV1 343 466 -397 29 28 0 0 chr3 8718486 8718522 -218806056 + AT_rich Low_complexity Low_complexity 1 36 0 2399 253 42 39 chr3 8719712 8721544 -218803034 + L1MCc LINE L1 807 2906 -4035 2240 98 3 0 chr3 8721544 8721849 -218802729 - AluSp SINE Alu -5 308 3 2399 253 42 39 chr3 8721849 8722885 -218801693 + L1MCc LINE L1 2906 3937 -3004 2264 97 20 0 chr3 8722891 8723189 -218801389 + AluSx SINE Alu 3 306 -6 3486 159 65 11 chr3 8723191 8723853 -218800725 + L1MC1 LINE L1 5635 6332 -1 374 341 33 76 chr3 8723887 8724007 -218800571 + L2 LINE L2 2876 2985 -328 2560 45 0 3 chr3 8724007 8724316 -218800262 - AluY SINE Alu -3 308 1 374 341 33 76 chr3 8724316 8724406 -218800172 + L2 LINE L2 2985 3077 -236 23 0 0 0 chr3 8724539 8724562 -218800016 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr3 8724563 8724586 -218799992 + (T)n Simple_repeat Simple_repeat 1 23 0 801 192 7 0 chr3 8724592 8724738 -218799840 + L1ME2 LINE L1 5452 5598 -735 647 165 0 0 chr3 8724750 8724871 -218799707 - L1MC/D LINE L1 -2542 5453 5333 369 262 197 35 chr3 8726056 8726514 -218798064 - MLT1H1 LTR MaLR -6 588 1 22 0 0 0 chr3 8726861 8726883 -218797695 + AT_rich Low_complexity Low_complexity 1 22 0 1901 64 0 49 chr3 8726935 8727199 -218797379 - AluY SINE Alu -13 298 48 515 253 123 30 chr3 8727370 8727639 -218796939 + MER46C DNA MER2_type 1 294 -44 243 227 149 58 chr3 8727671 8727825 -218796753 - MIR SINE MIR 0 262 95 26 0 0 0 chr3 8729136 8729162 -218795416 + AT_rich Low_complexity Low_complexity 1 26 0 3535 225 45 24 chr3 8729774 8730680 -218793898 - MER45B DNA AcHobo -27 1013 89 430 314 31 63 chr3 8732336 8732559 -218792019 - MIR SINE MIR -31 231 16 270 253 21 84 chr3 8733327 8733422 -218791156 - L2 LINE L2 -2 3311 3223 773 204 25 6 chr3 8733461 8733618 -218790960 + MER97c DNA MER1_type? 20 179 -911 976 261 65 36 chr3 8733656 8734104 -218790474 + L1ME2 LINE L1 5685 6145 -19 438 108 0 0 chr3 8734362 8734427 -218790151 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2350 105 0 0 chr3 8734590 8734895 -218789683 - AluSc SINE Alu -4 305 1 180 0 0 0 chr3 8735622 8735642 -218788936 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 90 3 3 chr3 8735733 8736033 -218788545 - AluSx SINE Alu -2 310 11 22 35 0 0 chr3 8736301 8736330 -218788248 + AT_rich Low_complexity Low_complexity 1 29 0 1593 213 101 0 chr3 8736457 8736823 -218787755 + MLT1A1-int LTR MaLR 1333 1735 0 233 212 197 0 chr3 8736823 8736889 -218787689 + MLT1A1 LTR MaLR 1 79 -295 340 309 0 0 chr3 8736929 8737026 -218787552 + MLT1A1 LTR MaLR 60 156 -218 756 184 21 154 chr3 8737057 8737291 -218787287 + MLT1A1 LTR MaLR 162 365 0 407 335 6 29 chr3 8737335 8737505 -218787073 - MER5A DNA MER1_type -23 166 1 442 327 17 14 chr3 8737556 8737742 -218786836 + MIR SINE MIR 25 209 -53 293 331 182 7 chr3 8737914 8738068 -218786510 - MIR SINE MIR -15 247 67 528 284 91 33 chr3 8739174 8739417 -218785161 - MIR SINE MIR -4 258 2 210 274 19 57 chr3 8740112 8740218 -218784360 - MIR SINE MIR -54 208 107 216 224 17 17 chr3 8740744 8740802 -218783776 + CT-rich Low_complexity Low_complexity 2 59 0 1654 142 54 85 chr3 8741067 8741454 -218783124 - THE1C LTR MaLR 0 375 1 1926 175 0 0 chr3 8741850 8742158 -218782420 - AluSx SINE Alu -4 308 1 2201 105 0 32 chr3 8742578 8742893 -218781685 + AluSg1 SINE Alu 1 305 -4 1488 214 61 12 chr3 8743937 8744279 -218780299 + MLT1A1 LTR MaLR 1 359 -6 679 273 16 0 chr3 8744840 8745023 -218779555 + MER58A DNA MER1_type 1 186 -38 774 201 17 6 chr3 8745038 8745217 -218779361 - L1MD1 LINE L1 -8 6234 6054 2657 188 35 25 chr3 8745228 8745320 -218779258 - L1MD1 LINE L1 -252 5990 5900 2412 123 17 3 chr3 8745320 8745679 -218778899 + THE1B LTR MaLR 1 364 0 2657 188 35 25 chr3 8745679 8746252 -218778326 - L1MD1 LINE L1 -342 5900 5319 1905 178 73 8 chr3 8746451 8746821 -218777757 + MSTD LTR MaLR 1 394 -2 4989 262 68 38 chr3 8746823 8748508 -218776070 + MSTD-int LTR MaLR 1 1735 0 1863 176 92 0 chr3 8748508 8748867 -218775711 + MSTD LTR MaLR 1 392 -4 22 56 0 0 chr3 8749210 8749246 -218775332 + AT_rich Low_complexity Low_complexity 1 36 0 461 281 103 50 chr3 8749944 8750186 -218774392 + MIR SINE MIR 5 259 -3 343 152 38 13 chr3 8750370 8750449 -218774129 + LTR56 LTR ERV1 349 429 -16 264 154 0 0 chr3 8751291 8751343 -218773235 + (TG)n Simple_repeat Simple_repeat 1 52 0 316 360 71 22 chr3 8751370 8751595 -218772983 - L3 LINE CR1 -159 1418 1183 425 314 41 41 chr3 8751751 8751971 -218772607 - MIR SINE MIR -37 225 6 327 49 0 0 chr3 8752412 8752453 -218772125 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 0 40 0 chr3 8752521 8752546 -218772032 + (TTA)n Simple_repeat Simple_repeat 2 27 0 674 198 152 5 chr3 8752546 8752743 -218771835 - MER5C DNA MER1_type -47 277 52 1744 186 3 0 chr3 8753049 8753345 -218771233 - AluJo SINE Alu -11 301 5 301 268 86 86 chr3 8753794 8754003 -218770575 - L1ME3A LINE L1 -283 5887 5679 299 292 64 21 chr3 8754116 8754349 -218770229 - L1ME3A LINE L1 -651 5513 5271 325 284 35 103 chr3 8755878 8756110 -218768468 - L3 LINE CR1 -518 1059 844 189 363 55 11 chr3 8756273 8756364 -218768214 - L3 LINE CR1 -11 1566 1472 198 264 114 36 chr3 8756450 8756590 -218767988 + MIR SINE MIR 46 196 -66 2024 108 0 81 chr3 8756820 8757154 -218767424 + AluSx SINE Alu 1 307 -5 407 250 167 14 chr3 8757669 8757813 -218766765 + MER5A DNA MER1_type 4 169 -20 200 375 0 0 chr3 8757839 8757911 -218766667 - MER5B DNA MER1_type -60 118 47 290 388 50 0 chr3 8758765 8758925 -218765653 - MIR3 SINE MIR -1 207 40 210 356 46 11 chr3 8758932 8759019 -218765559 + L2 LINE L2 2443 2532 -782 350 235 118 78 chr3 8759051 8759255 -218765323 + L2 LINE L2 2833 3044 -228 414 200 12 0 chr3 8759395 8759480 -218765098 + MER94 DNA DNA 1 86 -48 836 144 51 20 chr3 8759711 8759906 -218764672 + L1MA5 LINE L1 6100 6300 0 48 18 0 0 chr3 8759909 8759964 -218764614 + AT_rich Low_complexity Low_complexity 1 55 0 279 230 23 46 chr3 8760660 8760747 -218763831 + MER112 DNA MER1_type 1 85 -175 189 250 0 0 chr3 8760749 8760809 -218763769 + (CATA)n Simple_repeat Simple_repeat 1 60 0 192 355 47 12 chr3 8761002 8761174 -218763404 - L2 LINE L2 -1108 2206 2029 225 287 126 35 chr3 8761245 8761332 -218763246 + L2 LINE L2 3193 3287 -26 1827 223 122 56 chr3 8761535 8762270 -218762308 + LTR50 LTR ERVL 10 793 -2 4350 86 12 80 chr3 8762443 8763093 -218761485 + L1PB1 LINE L1 5193 5776 -375 189 0 0 0 chr3 8763093 8763114 -218761464 + (CA)n Simple_repeat Simple_repeat 1 21 0 4350 86 12 80 chr3 8763114 8763312 -218761266 + L1PB1 LINE L1 5776 5986 -165 753 293 26 7 chr3 8763320 8763627 -218760951 + L1M4 LINE L1 2272 2584 -3562 5023 144 17 5 chr3 8763680 8764674 -218759904 + L1PA16 LINE L1 5128 6133 -33 3262 138 24 29 chr3 8764814 8765403 -218759175 - LTR60 LTR ERV1 0 586 1 248 184 126 0 chr3 8765465 8765568 -218759010 + HAL1b LINE L1 746 861 -487 2693 16 3 3 chr3 8765797 8766102 -218758476 + AluY SINE Alu 1 305 -6 445 253 123 0 chr3 8766208 8766362 -218758216 + MLT1F1 LTR MaLR 9 181 -386 3080 101 41 0 chr3 8766420 8766855 -218757723 + MLT2A2 LTR ERVL 1 453 0 1116 159 19 9 chr3 8766855 8767069 -218757509 - Tigger1 DNA MER2_type -9 2409 2194 295 296 0 0 chr3 8767109 8767207 -218757371 + L1M4 LINE L1 2592 2689 -3457 462 258 85 25 chr3 8767222 8767657 -218756921 - L1MEc LINE L1 -3923 2473 2013 409 233 85 51 chr3 8767809 8767985 -218756593 - MLT1K LTR MaLR -34 554 373 24 0 0 0 chr3 8768007 8768031 -218756547 + AT_rich Low_complexity Low_complexity 1 24 0 1916 201 25 81 chr3 8768035 8768606 -218755972 - LTR8 LTR ERV1 0 691 153 5132 132 24 5 chr3 8768628 8769818 -218754760 - L1PA16 LINE L1 -11 6155 4981 1683 112 73 0 chr3 8769819 8770105 -218754473 - LTR49 LTR ERV1 -288 307 1 343 250 85 51 chr3 8770387 8770563 -218754015 + MLT1K LTR MaLR 373 554 -34 319 243 29 10 chr3 8772415 8772518 -218752060 + MER103 DNA DNA 55 159 -7 291 316 51 0 chr3 8773213 8773292 -218751286 + MIR SINE MIR 44 126 -82 351 231 51 0 chr3 8773543 8773621 -218750957 - MIR SINE MIR -16 246 165 210 278 122 11 chr3 8774167 8774257 -218750321 - L2 LINE L2 -35 3237 3138 12042 151 35 14 chr3 8774395 8776597 -218747981 + Tigger4(Zombi) DNA MER2_type 1 2248 -483 41771 35 9 3 chr3 8776597 8782712 -218741866 - L1PA3 LINE L1 -5 6150 7 2525 115 33 102 chr3 8782712 8783259 -218741319 + Tigger4(Zombi) DNA MER2_type 2222 2730 -1 331 348 11 50 chr3 8783352 8783548 -218741030 + MIR SINE MIR 1 191 -17 204 125 0 0 chr3 8784305 8784337 -218740241 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1726 217 24 78 chr3 8784657 8785192 -218739386 - MLT2B3 LTR ERVL -48 506 1 1293 158 74 74 chr3 8785402 8785700 -218738878 + AluJb SINE Alu 1 298 -14 2467 86 0 0 chr3 8785792 8786094 -218738484 + AluY SINE Alu 1 302 -9 545 194 37 0 chr3 8786611 8786719 -218737859 - MLT2B3 LTR ERVL -72 482 371 341 82 0 0 chr3 8786791 8786840 -218737738 - MLT2B1 LTR ERVL 0 520 472 207 266 16 16 chr3 8786850 8786914 -218737664 + L2 LINE L2 3246 3309 -4 236 309 53 63 chr3 8787594 8787801 -218736777 - L2 LINE L2 0 3313 3109 362 331 105 6 chr3 8787834 8788015 -218736563 - L2 LINE L2 -358 2956 2758 2550 293 103 115 chr3 8788025 8789131 -218735447 - L2 LINE L2 -840 2474 1356 708 218 51 60 chr3 8789131 8789347 -218735231 - MER58A DNA MER1_type -1 223 10 2550 293 103 115 chr3 8789347 8789389 -218735189 - L2 LINE L2 -1958 1356 1315 1590 213 45 8 chr3 8789389 8789741 -218734837 + MLT1A1 LTR MaLR 1 365 0 2550 293 103 115 chr3 8789741 8790853 -218733725 - L2 LINE L2 -1999 1315 28 301 286 0 0 chr3 8791487 8791571 -218733007 + MER94 DNA DNA 5 88 -46 1139 343 40 17 chr3 8792631 8793205 -218731373 + L1PA16 LINE L1 788 1374 -6200 277 246 127 18 chr3 8793261 8793371 -218731207 + L1PA16 LINE L1 2176 2297 -5277 260 346 0 0 chr3 8793350 8793428 -218731150 + L1PA16 LINE L1 2104 2181 -5400 * 13260 232 29 16 chr3 8794087 8799428 -218725150 + L1PA16 LINE L1 2225 7602 -2 719 296 83 53 chr3 8799525 8799900 -218724678 + MLT1I LTR MaLR 4 389 -20 557 168 16 16 chr3 8799982 8800107 -218724471 + L1MA10 LINE L1 6209 6333 -1 279 0 0 0 chr3 8800471 8800502 -218724076 + (CA)n Simple_repeat Simple_repeat 2 32 0 1992 173 11 6 chr3 8800559 8800912 -218723666 - THE1A LTR MaLR 0 355 1 11089 103 17 2 chr3 8800912 8802468 -218722110 - THE1A-int LTR MaLR 0 1580 2 2184 138 23 6 chr3 8802469 8802818 -218721760 - THE1A LTR MaLR 0 355 1 264 370 55 0 chr3 8803118 8803264 -218721314 - MIR3 SINE MIR -1 207 54 266 215 15 31 chr3 8804431 8804496 -218720082 - L1PB4 LINE L1 -90 6066 6003 27 49 0 0 chr3 8804515 8804556 -218720022 + AT_rich Low_complexity Low_complexity 1 41 0 2427 62 0 10 chr3 8804924 8805233 -218719345 + AluY SINE Alu 1 306 -5 395 261 80 29 chr3 8805912 8806050 -218718528 - L1PB4 LINE L1 0 6156 6012 892 135 10 91 chr3 8806633 8806841 -218717737 - L1MA10 LINE L1 -2 6332 6142 4072 189 52 26 chr3 8806848 8808513 -218716065 - L1MB1 LINE L1 -135 6033 4316 221 130 43 58 chr3 8809158 8809227 -218715351 + (TATAG)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr3 8810450 8810485 -218714093 + AT_rich Low_complexity Low_complexity 1 35 0 196 29 29 29 chr3 8811378 8811412 -218713166 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr3 8811960 8811983 -218712595 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 8812018 8812039 -218712539 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr3 8812140 8812199 -218712379 + AT_rich Low_complexity Low_complexity 1 59 0 263 125 42 52 chr3 8812241 8812337 -218712241 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 222 374 53 15 chr3 8812404 8812535 -218712043 + MER5A DNA MER1_type 54 189 0 278 368 114 14 chr3 8812575 8812795 -218711783 + L2 LINE L2 2805 3046 -226 360 326 19 49 chr3 8812814 8813051 -218711527 - MIR SINE MIR 0 262 35 11470 203 55 25 chr3 8813072 8816612 -218707966 + L1PA16 LINE L1 806 4240 -2629 6925 61 26 1 chr3 8816612 8817487 -218707091 - MER11D LTR ERVK 0 897 1 11470 203 55 25 chr3 8817487 8818006 -218706572 + L1PA16 LINE L1 4240 4742 -2127 234 0 0 0 chr3 8818006 8818032 -218706546 + (CA)n Simple_repeat Simple_repeat 1 26 0 11470 203 55 25 chr3 8818032 8819780 -218704798 + L1PA16 LINE L1 4742 6860 -9 21 0 0 0 chr3 8819784 8819805 -218704773 + AT_rich Low_complexity Low_complexity 1 21 0 372 322 11 72 chr3 8821305 8821485 -218703093 + MIR SINE MIR 23 191 -71 254 203 0 38 chr3 8821588 8821667 -218702911 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 1589 237 68 45 chr3 8821823 8822592 -218701986 + Charlie7 DNA MER1_type 1723 2508 -104 1750 211 35 28 chr3 8822836 8823295 -218701283 - MLT1C LTR MaLR 0 467 6 506 241 165 24 chr3 8825484 8825696 -218698882 + MIR SINE MIR 21 262 0 1894 128 10 7 chr3 8825809 8826105 -218698473 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 8826211 8826232 -218698346 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 0 chr3 8826289 8826363 -218698215 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 483 328 102 11 chr3 8827176 8827353 -218697225 + MIR SINE MIR 6 198 -64 4205 45 0 0 chr3 8827470 8828000 -218696578 - L1P LINE L1 -2438 3708 3179 2909 23 0 0 chr3 8827993 8828337 -218696241 + L1P LINE L1 3708 4051 -2095 * 228 65 0 0 chr3 8828331 8828362 -218696216 - L1P LINE L1 -2937 3209 3179 * 1253 21 0 0 chr3 8828359 8828504 -218696074 + L1PA3 LINE L1 3712 3856 -2290 11246 24 6 0 chr3 8828504 8830591 -218693987 + L1PA3 LINE L1 4061 6152 -3 21 0 0 0 chr3 8830591 8830612 -218693966 + AT_rich Low_complexity Low_complexity 1 21 0 292 327 63 25 chr3 8831042 8831201 -218693377 + MIR3 SINE MIR 35 199 -9 2011 118 6 43 chr3 8831311 8831633 -218692945 + AluSg SINE Alu 1 310 0 1939 194 24 5 chr3 8831657 8832034 -218692544 - MER44D DNA MER2_type -166 439 1 344 288 149 40 chr3 8832807 8833029 -218691549 - MIR SINE MIR -13 249 4 2318 64 0 10 chr3 8833216 8833511 -218691067 + AluY SINE Alu 1 292 -19 32 43 0 0 chr3 8834412 8834458 -218690120 + AT_rich Low_complexity Low_complexity 1 46 0 379 342 103 40 chr3 8835122 8835394 -218689184 - L3 LINE CR1 -17 1560 1272 192 308 202 30 chr3 8835904 8836102 -218688476 - L3 LINE CR1 -910 667 436 779 299 33 11 chr3 8836522 8836907 -218687671 + LTR16A LTR ERVL 16 450 0 567 105 0 12 chr3 8837536 8837622 -218686956 - AluSg/x SINE Alu -13 297 213 208 322 98 49 chr3 8837803 8837946 -218686632 + MIR SINE MIR 34 183 -79 29 0 0 0 chr3 8838037 8838066 -218686512 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr3 8839208 8839274 -218685304 + AT_rich Low_complexity Low_complexity 1 66 0 241 111 86 19 chr3 8839286 8839448 -218685130 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 31 0 0 chr3 8839448 8839480 -218685098 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 8839570 8839612 -218684966 + AT_rich Low_complexity Low_complexity 1 42 0 2427 122 28 0 chr3 8840148 8840501 -218684077 + THE1B LTR MaLR 1 363 -1 11283 100 4 5 chr3 8840502 8840993 -218683585 + THE1B-int LTR MaLR 1 491 -1089 2170 100 0 28 chr3 8840993 8841313 -218683265 + AluSx SINE Alu 1 311 -1 11283 100 4 5 chr3 8841313 8842402 -218682176 + THE1B-int LTR MaLR 491 1580 0 2166 146 36 14 chr3 8842402 8842758 -218681820 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr3 8842942 8842983 -218681595 + AT_rich Low_complexity Low_complexity 1 41 0 208 139 0 0 chr3 8843506 8843542 -218681036 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 334 409 53 28 chr3 8843606 8844163 -218680415 - L2 LINE L2 -1 3271 2703 684 237 71 62 chr3 8844351 8844562 -218680016 - MER20 DNA MER1_type -5 214 2 473 254 30 45 chr3 8844917 8845051 -218679527 - L2 LINE L2 0 3313 3182 270 403 56 7 chr3 8845046 8845190 -218679388 - MER5A DNA MER1_type -38 151 1 * 299 243 19 0 chr3 8845275 8845363 -218679215 + (TA)n Simple_repeat Simple_repeat 1 93 -12 270 81 0 0 chr3 8845363 8845400 -218679178 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 243 19 0 chr3 8845400 8845414 -218679164 + (TA)n Simple_repeat Simple_repeat 93 105 0 257 289 242 7 chr3 8845931 8846080 -218678498 - MER5A DNA MER1_type 0 189 6 439 231 172 11 chr3 8846224 8846410 -218678168 - L1MC/D LINE L1 -2336 5472 5257 489 264 83 7 chr3 8846680 8846956 -218677622 - MER113 DNA MER1_type? -213 308 12 279 299 0 11 chr3 8847144 8847231 -218677347 + GA-rich Low_complexity Low_complexity 2 87 0 2161 91 31 0 chr3 8847390 8847676 -218676902 - AluSg SINE Alu -15 295 1 468 276 61 33 chr3 8847711 8847892 -218676686 - MIR SINE MIR -61 201 16 21 57 0 0 chr3 8848534 8848569 -218676009 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 8848751 8848771 -218675807 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 807 204 65 27 chr3 8848787 8848973 -218675605 - AluJo SINE Alu -78 234 42 276 236 16 49 chr3 8849188 8849311 -218675267 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 223 241 7 51 chr3 8849258 8849395 -218675183 + (TTTA)n Simple_repeat Simple_repeat 4 134 0 * 265 321 71 36 chr3 8849395 8849507 -218675071 - MIR SINE MIR -116 146 31 308 333 84 33 chr3 8849791 8850004 -218674574 - MIR SINE MIR -31 231 8 2373 35 42 0 chr3 8850118 8850405 -218674173 + AluY SINE Alu 1 299 -12 43783 43 7 0 chr3 8850497 8856613 -218667965 + L1PA3 LINE L1 1 6152 -3 246 174 0 0 chr3 8857563 8857609 -218666969 + (TATG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 8857676 8857698 -218666880 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 345 47 0 0 chr3 8857697 8857740 -218666838 + (TA)n Simple_repeat Simple_repeat 2 44 0 2387 207 31 66 chr3 8857905 8858479 -218666099 - MLT2B3 LTR ERVL 0 554 1 765 249 42 73 chr3 8859269 8859530 -218665048 - MIR SINE MIR -4 258 6 24 77 0 0 chr3 8860608 8860660 -218663918 + AT_rich Low_complexity Low_complexity 1 52 0 193 322 119 25 chr3 8860854 8860972 -218663606 + L2 LINE L2 3180 3308 -5 466 72 14 0 chr3 8860980 8861049 -218663529 + L1MB1 LINE L1 6098 6167 -1 683 317 20 37 chr3 8861885 8862131 -218662447 + MIR SINE MIR 16 257 -5 222 37 0 0 chr3 8862531 8862558 -218662020 + (CATTT)n Simple_repeat Simple_repeat 4 30 0 2150 116 0 0 chr3 8862558 8862842 -218661736 - AluSx SINE Alu -28 284 1 22 0 0 0 chr3 8862844 8862866 -218661712 + AT_rich Low_complexity Low_complexity 1 22 0 285 274 144 14 chr3 8863642 8863788 -218660790 - MIR SINE MIR 0 262 98 1107 268 155 9 chr3 8864159 8864614 -218659964 - MLT1F1 LTR MaLR -40 527 1 2394 157 36 19 chr3 8865373 8865794 -218658784 - MSTC LTR MaLR 0 428 1 288 0 0 0 chr3 8866367 8866399 -218658179 + (T)n Simple_repeat Simple_repeat 1 32 0 524 289 88 21 chr3 8867102 8867341 -218657237 - MLT1L LTR MaLR -211 404 150 1824 156 3 0 chr3 8867547 8867830 -218656748 + AluSg SINE Alu 27 310 0 209 235 0 12 chr3 8868321 8868402 -218656176 + CT-rich Low_complexity Low_complexity 3 82 0 259 292 39 15 chr3 8868479 8868609 -218655969 + LTR67 LTR ERVL 411 543 -14 1731 134 4 19 chr3 8869047 8869315 -218655263 + AluY SINE Alu 43 306 -5 193 239 0 22 chr3 8870477 8870523 -218654055 + L2 LINE L2 3267 3311 -2 4948 191 19 14 chr3 8870685 8870982 -218653596 + L1PA16 LINE L1 4125 4419 -1747 2238 116 3 0 chr3 8870982 8871293 -218653285 - AluSx SINE Alu 0 312 1 4948 191 19 14 chr3 8871293 8872475 -218652103 + L1PA16 LINE L1 4419 5607 -559 1522 103 4 0 chr3 8872474 8872707 -218651871 - L1PA8 LINE L1 -1642 4504 4271 * 6395 101 1 1 chr3 8872707 8873360 -218651218 + L1PA8 LINE L1 4522 5174 -998 337 48 0 48 chr3 8873360 8873422 -218651156 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6395 101 1 1 chr3 8873422 8874414 -218650164 + L1PA8 LINE L1 5173 6172 0 2664 154 0 0 chr3 8874416 8874838 -218649740 + L1PA16 LINE L1 5601 6022 -144 972 96 7 0 chr3 8874893 8875028 -218649550 + L1PA16 LINE L1 6022 6157 -9 359 310 37 61 chr3 8875704 8875949 -218648629 - MIR SINE MIR 0 262 24 204 292 0 0 chr3 8876397 8876445 -218648133 + L2 LINE L2 2679 2726 -588 1521 241 34 0 chr3 8876476 8876829 -218647749 + MLT1A1 LTR MaLR 1 365 0 2410 284 159 40 chr3 8876894 8878071 -218646507 - L2 LINE L2 -339 2975 1622 2113 126 0 0 chr3 8878071 8878365 -218646213 + AluSx SINE Alu 1 294 -18 2410 284 159 40 chr3 8878365 8878505 -218646073 - L2 LINE L2 -1692 1622 1500 306 337 11 0 chr3 8878563 8878658 -218645920 + L2 LINE L2 3168 3263 -9 216 0 0 0 chr3 8879369 8879393 -218645185 + (CA)n Simple_repeat Simple_repeat 2 25 0 6476 153 39 18 chr3 8879710 8879975 -218644603 - Tigger3b DNA MER2_type -1797 1231 973 3538 144 0 0 chr3 8879975 8880497 -218644081 + MER1A DNA MER1_type 2 523 -4 6476 153 39 18 chr3 8880497 8881434 -218643144 - Tigger3b DNA MER2_type -2055 973 4 268 284 28 6 chr3 8881873 8882049 -218642529 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 0 0 0 chr3 8882496 8882525 -218642053 + AT_rich Low_complexity Low_complexity 1 29 0 4724 51 0 0 chr3 8882759 8883329 -218641249 + L1PA5 LINE L1 5572 6141 -13 229 208 0 21 chr3 8884359 8884407 -218640171 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 264 10 101 chr3 8884506 8884714 -218639864 + MIR SINE MIR 61 249 -13 501 263 157 80 chr3 8885210 8885624 -218638954 - MLT1H LTR MaLR 0 549 104 2029 155 0 0 chr3 8886695 8886999 -218637579 + AluSx SINE Alu 1 304 -8 639 240 84 0 chr3 8887004 8887158 -218637420 - MER96 DNA MER1_type? -7 168 2 565 269 92 50 chr3 8887404 8887642 -218636936 + MIR SINE MIR 15 262 0 527 165 12 0 chr3 8887743 8887828 -218636750 + HUERS-P3 LTR ERV1 8830 8915 -4 2591 197 55 8 chr3 8887836 8888365 -218636213 + LTR9B LTR ERV1 7 560 -84 207 0 0 0 chr3 8888365 8888388 -218636190 + (A)n Simple_repeat Simple_repeat 1 23 0 23 78 0 0 chr3 8888587 8888638 -218635940 + AT_rich Low_complexity Low_complexity 1 51 0 1614 163 0 0 chr3 8889509 8889761 -218634817 - AluJb SINE Alu -60 252 1 283 363 88 18 chr3 8889804 8890030 -218634548 + MIR SINE MIR 4 245 -17 329 271 211 31 chr3 8890209 8890551 -218634027 - L2 LINE L2 -181 3091 2690 1414 191 3 53 chr3 8891480 8891762 -218632816 + Tigger7 DNA MER2_type 1 268 -2219 517 178 0 11 chr3 8891764 8891854 -218632724 + Tigger7 DNA MER2_type 2395 2483 -4 183 371 81 32 chr3 8891925 8892049 -218632529 - L2 LINE L2 -20 3252 3123 291 357 68 61 chr3 8892373 8892947 -218631631 - L2 LINE L2 -339 2975 2398 2112 174 22 25 chr3 8892951 8893399 -218631179 + L1MC2 LINE L1 5890 6336 -8 443 297 30 36 chr3 8893454 8893619 -218630959 - L2 LINE L2 -1286 2028 1865 1880 301 28 0 chr3 8894284 8894960 -218629618 + L1MEc LINE L1 40 771 -5625 316 314 51 0 chr3 8895199 8895317 -218629261 + MER5C DNA MER1_type 1 124 -200 246 150 117 0 chr3 8895439 8895499 -218629079 + MER5C DNA MER1_type 257 323 -1 213 39 0 0 chr3 8896055 8896081 -218628497 + (T)n Simple_repeat Simple_repeat 1 26 0 2194 125 0 0 chr3 8897115 8897418 -218627160 - AluSx SINE Alu -9 303 1 2522 87 0 0 chr3 8897646 8897957 -218626621 - AluY SINE Alu 0 311 1 226 0 59 0 chr3 8898736 8898770 -218625808 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3364 90 25 0 chr3 8898772 8899218 -218625360 - LTR22A LTR ERVK 0 458 2 965 226 5 5 chr3 8901886 8902090 -218622488 - MER20 DNA MER1_type 0 219 16 299 279 64 47 chr3 8903000 8903172 -218621406 + MLT1K LTR MaLR 412 586 -2 244 164 75 0 chr3 8904496 8904563 -218620015 - L1M4 LINE L1 -1438 4708 4637 391 297 21 7 chr3 8904850 8904995 -218619583 - ERVL LTR ERVL -4096 1668 1522 299 317 40 71 chr3 8905384 8905709 -218618869 - ERVL LTR ERVL -4618 1036 722 1184 300 90 7 chr3 8906271 8906714 -218617864 - MLT2E LTR ERVL -7 621 142 343 349 40 20 chr3 8906870 8907019 -218617559 + MIR SINE MIR 11 162 -100 475 261 25 6 chr3 8907020 8907181 -218617397 + L1MCa LINE L1 156 319 -6245 3271 53 24 40 chr3 8907264 8907719 -218616859 + LTR7 LTR ERV1 1 448 -2 19619 83 9 27 chr3 8907721 8910761 -218613817 + HERVH LTR ERV1 1 2987 -4726 858 135 20 0 chr3 8910755 8910903 -218613675 + HERVH LTR ERV1 3140 3290 -4423 * 2964 133 4 6 chr3 8910893 8911396 -218613182 + HERVH LTR ERV1 3492 3993 -3720 10066 60 7 3 chr3 8911398 8912754 -218611824 + HERVH LTR ERV1 4488 5848 -1865 253 233 101 39 chr3 8912791 8912920 -218611658 + L1MCa LINE L1 744 880 -5165 1936 105 94 0 chr3 8912931 8913208 -218611370 + AluY SINE Alu 1 303 -8 3231 230 76 41 chr3 8913213 8913422 -218611156 + L1MCa LINE L1 969 1169 -5395 2491 76 0 13 chr3 8913422 8913737 -218610841 + AluY SINE Alu 1 311 0 3231 230 76 41 chr3 8913737 8916636 -218607942 + L1MCa LINE L1 1169 4289 -2275 241 231 0 0 chr3 8916639 8916691 -218607887 + LTR30 LTR ERV1 1 52 -670 1079 165 134 27 chr3 8916691 8916952 -218607626 + pTR5 LTR ERV1 1395 1683 -755 1235 191 52 30 chr3 8916964 8917293 -218607285 + L1MC2 LINE L1 5999 6334 -10 186 103 0 0 chr3 8917421 8917450 -218607128 + (TTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 8918354 8918384 -218606194 + AT_rich Low_complexity Low_complexity 1 30 0 180 304 25 25 chr3 8919121 8919200 -218605378 + MIR SINE MIR 16 94 -114 315 63 0 127 chr3 8919257 8919320 -218605258 - MLT2D LTR ERVL -11 403 349 7390 61 4 0 chr3 8919441 8920450 -218604128 + L1P LINE L1 4391 5403 -743 1742 169 63 23 chr3 8920461 8920811 -218603767 - MLT2D LTR ERVL -50 364 1 196 336 25 8 chr3 8920813 8920935 -218603643 + MIR SINE MIR 139 262 0 25 51 0 0 chr3 8921700 8921739 -218602839 + AT_rich Low_complexity Low_complexity 1 39 0 2149 181 60 2 chr3 8922136 8922572 -218602006 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr3 8922750 8922771 -218601807 + AT_rich Low_complexity Low_complexity 1 21 0 233 239 90 15 chr3 8923611 8923678 -218600900 + MIR SINE MIR 68 139 -123 600 293 54 16 chr3 8924035 8924277 -218600301 - MIR SINE MIR -6 256 6 488 249 106 67 chr3 8924351 8924819 -218599759 + MLT1H LTR MaLR 29 549 0 346 198 86 43 chr3 8924841 8924957 -218599621 - L1ME4a LINE L1 -1 6120 6000 231 244 0 0 chr3 8924984 8925029 -218599549 - MIR SINE MIR -23 239 195 454 329 87 0 chr3 8925269 8925430 -218599148 - MIR SINE MIR -87 175 1 646 213 0 8 chr3 8925701 8925823 -218598755 + FLAM_A SINE Alu 5 125 -8 329 208 83 104 chr3 8927079 8927142 -218597436 + MER5B DNA MER1_type 1 64 -114 2328 119 0 0 chr3 8927142 8927454 -218597124 + AluSx SINE Alu 1 312 0 329 208 83 104 chr3 8927454 8927534 -218597044 + MER5B DNA MER1_type 64 141 -37 413 296 88 39 chr3 8927722 8927982 -218596596 + MLT1L LTR MaLR 123 395 -220 273 273 76 8 chr3 8928028 8928160 -218596418 + MLT1L LTR MaLR 466 606 -9 22 0 0 0 chr3 8928636 8928658 -218595920 + AT_rich Low_complexity Low_complexity 1 22 0 433 235 0 12 chr3 8928789 8928874 -218595704 + L2 LINE L2 3230 3313 0 182 268 155 0 chr3 8929251 8929322 -218595256 - L2 LINE L2 -10 3303 3222 628 309 18 0 chr3 8929808 8929976 -218594602 - MER5B DNA MER1_type 0 178 8 27 0 0 0 chr3 8930336 8930363 -218594215 + AT_rich Low_complexity Low_complexity 1 27 0 282 194 60 0 chr3 8931068 8931135 -218593443 - MER58 DNA MER1_type -13 2407 2337 623 259 115 8 chr3 8932015 8932258 -218592320 + MER5C DNA MER1_type 1 269 -55 3199 111 31 0 chr3 8932422 8932898 -218591680 + PABL_A LTR ERV1 1 491 -169 1957 115 36 91 chr3 8932898 8933102 -218591476 - THE1B LTR MaLR -1 363 188 2235 131 0 0 chr3 8933102 8933414 -218591164 - AluSx SINE Alu 0 312 1 1957 115 36 91 chr3 8933414 8933593 -218590985 - THE1B LTR MaLR -176 188 1 11396 101 12 3 chr3 8933593 8935159 -218589419 - THE1B-int LTR MaLR 0 1580 1 2242 138 8 24 chr3 8935159 8935529 -218589049 - THE1B LTR MaLR 0 364 1 1156 87 29 6 chr3 8935529 8935701 -218588877 + PABL_A LTR ERV1 485 660 0 269 241 72 0 chr3 8935740 8935823 -218588755 - MIR SINE MIR -70 192 104 438 236 26 47 chr3 8935823 8935960 -218588618 - LTR37B LTR ERV1 0 468 335 4067 122 19 2 chr3 8935960 8936584 -218587994 - MER41B LTR ERV1 0 635 1 438 236 26 47 chr3 8936584 8936637 -218587941 - LTR37B LTR ERV1 -133 335 282 740 164 111 58 chr3 8936669 8936858 -218587720 + MER93b LTR ERV1 27 225 -148 1653 194 83 35 chr3 8937056 8937683 -218586895 + MER39 LTR ERV1 8 707 0 574 226 59 23 chr3 8937690 8937909 -218586669 - MER39 LTR ERV1 -426 227 6 347 56 42 14 chr3 8938115 8938187 -218586391 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 7240 30 0 0 chr3 8938187 8939083 -218585495 - L1PA3 LINE L1 -6 6149 5254 512 264 21 0 chr3 8939092 8939232 -218585346 + MIR SINE MIR 86 228 -34 430 220 83 15 chr3 8941477 8941609 -218582969 - MER104 DNA Tc2 -18 162 22 38 0 0 0 chr3 8941758 8941796 -218582782 + AT_rich Low_complexity Low_complexity 1 38 0 572 113 0 0 chr3 8942245 8942325 -218582253 + AluS SINE Alu 1 80 -233 2063 128 38 0 chr3 8942327 8942616 -218581962 + AluSq SINE Alu 14 313 0 260 262 99 29 chr3 8942617 8942789 -218581789 + MLT1K LTR MaLR 405 588 0 200 326 78 54 chr3 8942874 8943003 -218581575 + L2 LINE L2 3182 3313 0 185 333 0 48 chr3 8943191 8943254 -218581324 + L2 LINE L2 3200 3259 -13 1640 113 254 29 chr3 8943933 8944279 -218580299 - MSTA LTR MaLR -2 426 3 301 344 76 18 chr3 8945033 8945257 -218579321 - MIR SINE MIR -14 248 12 336 318 40 27 chr3 8946033 8946181 -218578397 - MIR SINE MIR -12 250 101 192 431 29 0 chr3 8946305 8946407 -218578171 - MIR SINE MIR -97 165 61 455 0 18 0 chr3 8947734 8947789 -218576789 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 250 330 40 10 chr3 8947800 8947900 -218576678 + L2 LINE L2 3210 3312 -1 527 260 130 6 chr3 8948178 8948347 -218576231 - L3 LINE CR1 -76 1501 1312 1986 224 41 64 chr3 8949895 8950461 -218574117 + MLT2B3 LTR ERVL 2 554 0 230 224 15 15 chr3 8951512 8951579 -218572999 + (TA)n Simple_repeat Simple_repeat 2 68 0 717 252 13 8 chr3 8951579 8951740 -218572838 - MIR SINE MIR -67 141 23 1361 222 11 40 chr3 8951740 8952091 -218572487 - MER58B DNA MER1_type 0 341 1 717 252 13 8 chr3 8952091 8952109 -218572469 - MIR SINE MIR -185 23 7 328 246 339 0 chr3 8952120 8952250 -218572328 + MER5A DNA MER1_type 16 189 0 413 201 132 35 chr3 8952443 8952587 -218571991 - MER103 DNA DNA -7 159 2 334 246 0 154 chr3 8952837 8953012 -218571566 + MIR SINE MIR 96 243 -19 894 224 16 0 chr3 8953099 8953291 -218571287 + MER3 DNA MER1_type 15 209 0 206 391 126 11 chr3 8954160 8954510 -218570068 + L2 LINE L2 2369 2758 -556 2271 206 57 7 chr3 8954944 8955380 -218569198 - LTR32 LTR ERVL 0 471 14 284 310 65 60 chr3 8955380 8955564 -218569014 + L2 LINE L2 3087 3271 -1 182 156 0 0 chr3 8956547 8956579 -218567999 - L2 LINE L2 -1 3271 3240 361 309 55 36 chr3 8956688 8956908 -218567670 - MLT1K LTR MaLR -2 586 363 1957 221 54 74 chr3 8957026 8957805 -218566773 - LTR28 LTR ERV1 0 1020 109 397 241 207 13 chr3 8957806 8957967 -218566611 - LTR28 LTR ERV1 -286 178 1 1285 190 146 24 chr3 8958701 8959127 -218565451 - LTR54B LTR ERV1 -2 496 19 191 263 25 38 chr3 8959283 8959363 -218565215 + L2 LINE L2 3150 3228 -44 1993 139 11 0 chr3 8959424 8959711 -218564867 + AluSq SINE Alu 1 290 -23 1094 194 18 14 chr3 8959712 8959929 -218564649 + MER20 DNA MER1_type 2 219 0 246 333 9 9 chr3 8959943 8960048 -218564530 - MIR SINE MIR -111 151 47 2134 92 26 36 chr3 8961975 8962280 -218562298 - AluSp SINE Alu -11 302 1 2102 190 19 12 chr3 8962529 8962940 -218561638 - MLT2D LTR ERVL 0 414 1 1553 155 107 0 chr3 8963662 8963951 -218560627 - AluSx SINE Alu 0 320 5 195 357 18 65 chr3 8964135 8964303 -218560275 - L2 LINE L2 -225 3047 2888 2206 99 27 0 chr3 8965142 8965434 -218559144 - AluSg1 SINE Alu -9 300 1 1768 190 116 9 chr3 8965775 8966196 -218558382 - MLT1C LTR MaLR -1 466 1 329 373 42 0 chr3 8967099 8967241 -218557337 - MIR3 SINE MIR -25 183 36 572 237 0 0 chr3 8967420 8967534 -218557044 - Charlie1 DNA MER1_type 0 2761 2648 2395 197 52 41 chr3 8967538 8968147 -218556431 - L1MB8 LINE L1 -2 6245 5630 2781 265 27 7 chr3 8968154 8969081 -218555497 - L1MB8 LINE L1 -2516 3699 2751 1805 201 18 0 chr3 8969081 8969419 -218555159 + MER2 DNA MER2_type 1 344 0 2781 265 27 7 chr3 8969419 8969453 -218555125 - L1MB8 LINE L1 -3464 2751 2719 2055 132 0 10 chr3 8969460 8969771 -218554807 - MER50 LTR ERV1 -30 704 397 1565 117 8 25 chr3 8969804 8970044 -218554534 - MER50 LTR ERV1 -498 236 1 1108 258 87 15 chr3 8970044 8970855 -218553723 - L1MB8 LINE L1 -3493 2722 1868 351 203 0 0 chr3 8970990 8971064 -218553514 + (TA)n Simple_repeat Simple_repeat 1 74 0 4633 252 57 51 chr3 8971081 8971925 -218552653 - L1M4 LINE L1 -4467 2565 1727 2535 71 0 0 chr3 8971925 8972236 -218552342 - AluY SINE Alu 0 311 1 4633 252 57 51 chr3 8972236 8973487 -218551091 - L1M4 LINE L1 -5305 1727 2 871 201 22 93 chr3 8973488 8973756 -218550822 - Charlie1 DNA MER1_type -2512 249 1 260 51 0 26 chr3 8974033 8974072 -218550506 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 182 0 0 chr3 8975674 8975718 -218548860 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 570 347 60 8 chr3 8976543 8976791 -218547787 - MIR SINE MIR -1 261 1 255 308 0 0 chr3 8976808 8976873 -218547705 + A-rich Low_complexity Low_complexity 4 68 0 315 271 134 53 chr3 8976878 8977125 -218547453 + HAL1 LINE L1 1011 1277 -1230 443 308 8 0 chr3 8977129 8977262 -218547316 + GA-rich Low_complexity Low_complexity 3 136 0 21 36 0 0 chr3 8977289 8977317 -218547261 + AT_rich Low_complexity Low_complexity 1 28 0 520 253 148 13 chr3 8977344 8977573 -218547005 + MIR SINE MIR 1 260 -2 238 330 0 0 chr3 8978473 8978561 -218546017 + (TG)n Simple_repeat Simple_repeat 1 88 0 997 206 123 83 chr3 8978806 8979156 -218545422 + MLT1A1 LTR MaLR 1 364 -1 464 298 115 34 chr3 8979662 8979897 -218544681 - MIR SINE MIR 0 262 9 2256 115 0 0 chr3 8979901 8980205 -218544373 - AluSx SINE Alu -8 304 1 2176 109 7 0 chr3 8980504 8980797 -218543781 - AluSx SINE Alu -13 299 5 2123 110 0 7 chr3 8981968 8982267 -218542311 - AluSx SINE Alu -15 297 1 216 185 0 0 chr3 8982725 8982779 -218541799 + T-rich Low_complexity Low_complexity 1 54 0 512 277 36 0 chr3 8983006 8983143 -218541435 - MER45B DNA AcHobo -786 254 113 410 268 93 22 chr3 8983315 8983498 -218541080 + MER117 DNA MER1_type 2 197 0 26 30 0 0 chr3 8985175 8985208 -218539370 + AT_rich Low_complexity Low_complexity 1 33 0 183 246 49 16 chr3 8985304 8985365 -218539213 + MIR3 SINE MIR 118 180 -28 21 36 0 0 chr3 8986369 8986397 -218538181 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 48 12 chr3 8986578 8986746 -218537832 - HAL1b LINE L1 -438 910 737 2474 52 0 0 chr3 8987394 8987708 -218536870 - AluY SINE Alu 0 314 1 249 323 16 16 chr3 8987727 8987854 -218536724 - HAL1 LINE L1 -837 1670 1544 1712 126 100 0 chr3 8988128 8988397 -218536181 + AluJb SINE Alu 1 296 -16 2096 109 0 0 chr3 8988586 8988861 -218535717 - AluSc SINE Alu -18 291 17 423 274 36 48 chr3 8989118 8989286 -218535292 - L1ME3A LINE L1 -9 6161 5996 860 250 59 10 chr3 8990999 8991403 -218533175 - L1ME LINE L1 -2884 3760 3337 1624 179 188 8 chr3 8991659 8992016 -218532562 + MSTC LTR MaLR 8 428 0 777 271 163 18 chr3 8992020 8992070 -218532508 + MLT1E1 LTR MaLR 89 130 -463 3087 86 32 5 chr3 8992070 8992107 -218532471 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 8992107 8992144 -218532434 + (CA)n Simple_repeat Simple_repeat 2 38 0 3087 86 32 5 chr3 8992144 8992538 -218532040 - MLT2A1 LTR ERVL -34 410 1 777 271 163 18 chr3 8992538 8992764 -218531814 + MLT1E1 LTR MaLR 130 405 -188 800 257 6 6 chr3 8992888 8993067 -218531511 + MLT1E1 LTR MaLR 476 654 0 345 280 36 44 chr3 8993085 8993335 -218531243 - L1ME LINE L1 -3744 2900 2653 2355 92 0 3 chr3 8993936 8994242 -218530336 - AluY SINE Alu -6 305 1 242 255 38 84 chr3 8994273 8994536 -218530042 - L1ME LINE L1 -4904 1638 1516 30532 34 15 1 chr3 8994586 9000604 -218523974 - L1PA2 LINE L1 -2 6153 4 385 258 76 59 chr3 9000612 9000954 -218523624 - L1ME LINE L1 -5075 1559 1271 341 324 90 37 chr3 9001822 9002066 -218522512 - HAL1 LINE L1 -1426 1081 825 414 0 0 0 chr3 9002687 9002733 -218521845 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 273 71 40 chr3 9003563 9003662 -218520916 - L2 LINE L2 -4 3309 3208 1949 123 7 3 chr3 9003978 9004301 -218520277 - AluSq SINE Alu 0 324 1 794 292 75 35 chr3 9004399 9004800 -218519778 - MLT2F LTR ERVL -10 653 237 375 285 152 19 chr3 9004814 9005077 -218519501 - MLT2F LTR ERVL -353 310 13 619 341 35 0 chr3 9005225 9005454 -218519124 + MIR SINE MIR 19 255 -7 1880 204 25 46 chr3 9006135 9006615 -218517963 - L1MA9 LINE L1 -35 6277 5808 12212 38 1 1 chr3 9006922 9009163 -218515415 + L1PA4 LINE L1 3907 6153 -2 226 386 48 24 chr3 9009204 9009499 -218515079 + L2 LINE L2 2045 2346 -968 499 295 68 91 chr3 9009788 9010270 -218514308 + L2 LINE L2 1606 2076 -1238 21 0 0 0 chr3 9011473 9011494 -218513084 + AT_rich Low_complexity Low_complexity 1 21 0 908 327 51 57 chr3 9011507 9012073 -218512505 + MLT1K LTR MaLR 10 572 -16 264 77 0 0 chr3 9012885 9012924 -218511654 + (CA)n Simple_repeat Simple_repeat 2 40 0 651 214 0 0 chr3 9012924 9013069 -218511509 + L1MA9 LINE L1 6168 6312 0 2477 69 0 0 chr3 9013333 9013637 -218510941 - AluY SINE Alu -7 304 1 213 324 14 27 chr3 9013904 9013978 -218510600 - L2 LINE L2 -9 3263 3191 4831 106 11 3 chr3 9014857 9015565 -218509013 + L1PA13 LINE L1 5448 6161 -2 237 265 119 92 chr3 9015744 9015863 -218508715 + MIR SINE MIR 48 175 -87 2261 105 3 0 chr3 9015863 9016168 -218508410 + AluY SINE Alu 1 306 -5 237 265 119 92 chr3 9016168 9016233 -218508345 + MIR SINE MIR 175 237 -25 253 295 0 0 chr3 9016835 9016913 -218507665 + L1MC/D LINE L1 5722 5799 -2009 2238 55 10 3 chr3 9017330 9017620 -218506958 - AluY SINE Alu -19 292 1 238 164 0 30 chr3 9017944 9018011 -218506567 + T-rich Low_complexity Low_complexity 4 68 0 1575 158 16 16 chr3 9021095 9021398 -218503180 - L1MA4 LINE L1 -1 6299 5997 291 93 0 0 chr3 9022842 9022885 -218501693 + (CA)n Simple_repeat Simple_repeat 2 44 0 2156 123 10 0 chr3 9023007 9023332 -218501246 - AluSc SINE Alu 0 328 1 1548 173 40 4 chr3 9023344 9023622 -218500956 - AluJb SINE Alu -24 288 1 433 319 122 55 chr3 9023983 9024222 -218500356 - L3 LINE CR1 -751 826 604 1817 207 89 20 chr3 9024222 9024729 -218499849 + MER34 LTR ERV1 1 542 0 433 319 122 55 chr3 9024729 9024877 -218499701 - L3 LINE CR1 -973 604 404 2316 60 3 33 chr3 9024877 9025179 -218499399 - AluY SINE Alu -18 293 1 433 319 122 55 chr3 9025179 9025226 -218499352 - L3 LINE CR1 -1173 404 362 216 297 90 9 chr3 9027095 9027206 -218497372 + MIR SINE MIR 58 177 -85 26 0 0 0 chr3 9027925 9027951 -218496627 + AT_rich Low_complexity Low_complexity 1 26 0 3235 98 20 2 chr3 9028426 9028864 -218495714 + LTR10B LTR ERV1 1 446 -59 1217 205 17 8 chr3 9028868 9029107 -218495471 - MLT1A1 LTR MaLR -124 241 1 5699 236 75 37 chr3 9029113 9030777 -218493801 - MLT1A1-int LTR MaLR -7 1728 2 845 170 24 5 chr3 9030779 9031079 -218493499 - MLT1A1 LTR MaLR 0 365 1 290 298 101 63 chr3 9031170 9031328 -218493250 + MIR SINE MIR 36 199 -63 374 351 93 7 chr3 9031523 9031674 -218492904 + MIR SINE MIR 82 245 -17 216 276 81 41 chr3 9033824 9033947 -218490631 - L2 LINE L2 -1 3312 3185 30 27 0 0 chr3 9034183 9034220 -218490358 + AT_rich Low_complexity Low_complexity 1 37 0 208 366 55 24 chr3 9034244 9034408 -218490170 + L3b LINE CR1 1391 1559 -24 2309 113 0 0 chr3 9036279 9036588 -218487990 + AluSx SINE Alu 1 309 -3 627 228 24 87 chr3 9037044 9037250 -218487328 - MER58C DNA MER1_type -21 194 2 341 256 0 0 chr3 9037852 9037927 -218486651 + MER45 DNA AcHobo 1507 1581 0 707 247 7 0 chr3 9037941 9038091 -218486487 - MER45A DNA AcHobo -6 172 22 27 29 0 0 chr3 9039104 9039138 -218485440 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr3 9039996 9040047 -218484531 + AT_rich Low_complexity Low_complexity 1 51 0 2127 117 23 10 chr3 9040052 9040360 -218484218 + AluSq SINE Alu 1 312 -1 296 322 67 13 chr3 9040972 9041121 -218483457 - L2 LINE L2 -213 3059 2903 1399 177 12 4 chr3 9041193 9041447 -218483131 - MER83 LTR ERV1 0 448 193 228 35 0 0 chr3 9041683 9041712 -218482866 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 299 326 112 66 chr3 9042735 9042977 -218481601 - L2 LINE L2 -16 3256 3004 714 225 0 80 chr3 9043938 9044125 -218480453 + FAM SINE Alu 2 173 -2 279 0 0 0 chr3 9044518 9044549 -218480029 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7223 77 19 0 chr3 9044560 9046317 -218478261 - L1PA7 LINE L1 -11 6143 4369 25610 96 6 21 chr3 9046317 9051619 -218472959 - L1P3 LINE L1 -1164 5297 1 1649 195 3 3 chr3 9051947 9052244 -218472334 - AluJb SINE Alu -13 299 3 299 319 174 7 chr3 9052307 9052445 -218472133 - MER5A DNA MER1_type -3 186 26 271 287 101 23 chr3 9053120 9053249 -218471329 - MIR SINE MIR 0 262 124 * 316 347 143 40 chr3 9053229 9053723 -218470855 + L2 LINE L2 2672 3227 -86 2149 114 7 0 chr3 9054290 9054580 -218469998 + AluSc SINE Alu 1 292 -17 352 321 141 13 chr3 9055734 9056006 -218468572 - MLT1L LTR MaLR 0 615 229 776 183 7 0 chr3 9056095 9056232 -218468346 + AluJo SINE Alu 1 138 -174 7783 18 0 0 chr3 9056283 9057646 -218466932 - L1PA2 LINE L1 0 6155 4792 3590 19 0 0 chr3 9057646 9058068 -218466510 + L1PA2 LINE L1 4369 4790 -1356 342 294 228 28 chr3 9058072 9058252 -218466326 - MIR SINE MIR -46 216 1 567 278 81 45 chr3 9058584 9058849 -218465729 - L1MC4 LINE L1 -527 7515 7261 2032 193 119 104 chr3 9058849 9059663 -218464915 + LTR1B LTR ERV1 1 826 0 567 278 81 45 chr3 9059663 9059916 -218464662 - L1MC4 LINE L1 -781 7261 6976 204 113 0 94 chr3 9059921 9059974 -218464604 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 336 316 66 7 chr3 9060073 9060225 -218464353 + L1MC4 LINE L1 7498 7658 -384 450 303 59 47 chr3 9060243 9060563 -218464015 + L1MC4 LINE L1 7712 8035 -7 723 268 6 11 chr3 9060896 9061075 -218463503 - MER58A DNA MER1_type -22 202 25 225 393 13 20 chr3 9061134 9061284 -218463294 + L2 LINE L2 2907 3055 -217 209 205 205 26 chr3 9061472 9061550 -218463028 + L2 LINE L2 3218 3309 -4 2251 135 0 0 chr3 9061807 9062118 -218462460 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 9062547 9062576 -218462002 + AT_rich Low_complexity Low_complexity 1 29 0 4154 125 24 5 chr3 9062737 9063369 -218461209 + LTR9B LTR ERV1 1 644 0 30 27 0 0 chr3 9063456 9063493 -218461085 + AT_rich Low_complexity Low_complexity 1 37 0 1772 171 15 73 chr3 9065479 9065888 -218458690 - MLT1B LTR MaLR 0 390 6 413 194 0 0 chr3 9066306 9066373 -218458205 + Tigger2 DNA MER2_type 1 67 -2651 * 2579 169 11 5 chr3 9066359 9066808 -218457770 + Tigger2 DNA MER2_type 2267 2718 0 6534 147 37 36 chr3 9067466 9068063 -218456515 + Tigger3b DNA MER2_type 1 596 -2432 2261 109 0 7 chr3 9068063 9068365 -218456213 + AluSc SINE Alu 1 300 -9 6534 147 37 36 chr3 9068365 9068997 -218455581 + Tigger3b DNA MER2_type 596 1231 0 224 29 0 29 chr3 9069510 9069544 -218455034 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1315 232 30 55 chr3 9069760 9069801 -218454777 - MLT2C2 LTR ERVL -3 461 420 315 71 0 0 chr3 9069801 9069843 -218454735 + (TG)n Simple_repeat Simple_repeat 2 43 0 1315 232 30 55 chr3 9069843 9070270 -218454308 - MLT2C2 LTR ERVL -44 420 5 2544 99 17 11 chr3 9070590 9070952 -218453626 - THE1B LTR MaLR 0 364 1 2128 122 0 16 chr3 9073546 9073858 -218450720 + AluSx SINE Alu 1 307 -5 396 103 0 0 chr3 9073858 9073916 -218450662 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2387 64 3 0 chr3 9074546 9074842 -218449736 + AluY SINE Alu 1 297 -14 2121 96 24 3 chr3 9076608 9076900 -218447678 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr3 9078537 9078567 -218446011 + AT_rich Low_complexity Low_complexity 1 30 0 706 293 28 23 chr3 9078898 9079113 -218445465 - MIR SINE MIR -46 216 1 2384 61 14 0 chr3 9080211 9080508 -218444070 - AluY SINE Alu -10 301 1 507 279 14 7 chr3 9080610 9080750 -218443828 - MLT1G1 LTR MaLR -440 155 15 468 344 26 31 chr3 9080795 9080990 -218443588 - MIR SINE MIR -41 221 28 381 289 78 67 chr3 9081029 9081475 -218443103 + HAL1b LINE L1 224 674 -674 27 0 0 0 chr3 9081791 9081818 -218442760 + AT_rich Low_complexity Low_complexity 1 27 0 333 0 0 0 chr3 9082103 9082140 -218442438 + (TG)n Simple_repeat Simple_repeat 2 38 0 346 283 23 58 chr3 9082390 9082563 -218442015 - L1M4 LINE L1 -1446 4700 4534 2078 124 3 0 chr3 9082755 9083037 -218441541 - AluSp SINE Alu -30 283 1 21 36 0 0 chr3 9083215 9083243 -218441335 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 9083838 9084426 -218440152 + L1MC2 LINE L1 13 582 -5463 1814 161 3 17 chr3 9085033 9085332 -218439246 - AluJo SINE Alu -17 295 1 292 194 16 0 chr3 9085348 9085410 -218439168 + L1MC2 LINE L1 762 824 -5742 4289 228 90 52 chr3 9085438 9085784 -218438794 + L1M3e LINE L1 781 1112 -5451 2046 161 0 0 chr3 9085784 9086094 -218438484 + AluSx SINE Alu 1 310 -2 4289 228 90 52 chr3 9086094 9087379 -218437199 + L1M3e LINE L1 1112 2449 -4114 2614 188 27 21 chr3 9087379 9087852 -218436726 + MLT2B2 LTR ERVL 1 479 -36 261 98 0 0 chr3 9087852 9087893 -218436685 + (TG)n Simple_repeat Simple_repeat 2 42 0 2614 188 27 21 chr3 9087893 9087931 -218436647 + MLT2B2 LTR ERVL 479 515 0 4289 228 90 52 chr3 9087931 9088183 -218436395 + L1M3e LINE L1 2449 2690 -3873 1299 225 11 11 chr3 9088219 9088486 -218436092 + Tigger7 DNA MER2_type 1 267 -466 306 225 14 14 chr3 9088484 9088555 -218436023 + Tigger7 DNA MER2_type 2389 2459 -28 * 309 222 14 14 chr3 9088576 9088648 -218435930 + Tigger7 DNA MER2_type 2393 2464 -27 334 197 0 28 chr3 9088669 9088740 -218435838 + Tigger7 DNA MER2_type 2396 2464 -27 279 236 14 14 chr3 9088760 9088832 -218435746 + Tigger7 DNA MER2_type 2389 2460 -27 471 223 0 21 chr3 9088853 9088947 -218435631 + Tigger7 DNA MER2_type 2392 2483 -4 6744 231 71 55 chr3 9088949 9089855 -218434723 + L1MC2 LINE L1 2866 3756 -3006 294 29 0 0 chr3 9089855 9089890 -218434688 + (TC)n Simple_repeat Simple_repeat 2 36 0 6744 231 71 55 chr3 9089890 9090872 -218433706 + L1MC2 LINE L1 3756 4720 -2042 1242 169 4 8 chr3 9090872 9091120 -218433458 + L1MA4 LINE L1 6053 6299 -1 6744 231 71 55 chr3 9091120 9093059 -218431519 + L1MC2 LINE L1 4720 6754 -8 5179 248 74 61 chr3 9093423 9094959 -218429619 - L1M4 LINE L1 -1145 5001 3409 2146 102 0 0 chr3 9094959 9095269 -218429309 - AluSq SINE Alu 0 310 1 5179 248 74 61 chr3 9095269 9096576 -218428002 - L1M4 LINE L1 -2737 3409 2120 3706 177 31 20 chr3 9096578 9097514 -218427064 + L1PA16 LINE L1 4964 5914 -252 896 148 13 19 chr3 9097528 9097683 -218426895 + L1PA16 LINE L1 6001 6154 -12 583 249 105 30 chr3 9097694 9098007 -218426571 + L1ME LINE L1 5191 5521 -645 * 20481 55 10 2 chr3 9097976 9102573 -218422005 + L1PA5 LINE L1 1524 6153 -1 5862 196 42 37 chr3 9103332 9105690 -218418888 - L1MA7 LINE L1 -10 7700 5325 3921 240 57 26 chr3 9105673 9106789 -218417789 - L1MA7 LINE L1 -2689 4876 3687 * 2484 135 3 3 chr3 9106789 9107152 -218417426 - THE1B LTR MaLR -1 363 1 3921 240 57 26 chr3 9107152 9107552 -218417026 - L1MA7 LINE L1 -3878 3687 3301 1975 254 41 25 chr3 9107749 9108305 -218416273 - L1MA7 LINE L1 -5715 1781 1217 335 241 116 9 chr3 9109037 9109149 -218415429 + MLT1J2 LTR MaLR 324 447 -3 488 323 64 59 chr3 9109166 9109621 -218414957 - L2 LINE L2 -6 3307 2851 1579 163 0 7 chr3 9109733 9110003 -218414575 + AluJb SINE Alu 1 268 -44 204 143 0 0 chr3 9110007 9110049 -218414529 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 607 184 11 34 chr3 9110057 9110236 -218414342 + GA-rich Low_complexity Low_complexity 2 176 0 695 361 92 24 chr3 9110408 9110954 -218413624 - L2 LINE L2 -650 2664 2082 251 248 29 88 chr3 9113425 9113562 -218411016 - L1MC4 LINE L1 0 8042 7914 1019 273 74 71 chr3 9113589 9114308 -218410270 - L1MC4 LINE L1 -120 7922 7202 1558 211 31 0 chr3 9114364 9114724 -218409854 - L1MD1 LINE L1 -8 6628 6258 2815 230 15 20 chr3 9114725 9115555 -218409023 - L1MD1 LINE L1 -428 6208 5376 1387 189 20 20 chr3 9115555 9115856 -218408722 - L1MB2 LINE L1 -8 6163 5863 2815 230 15 20 chr3 9115856 9115907 -218408671 - L1MD1 LINE L1 -1260 5376 5326 189 74 0 0 chr3 9115907 9115934 -218408644 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2815 230 15 20 chr3 9115934 9116057 -218408521 - L1MD1 LINE L1 -1310 5326 5213 1040 269 85 13 chr3 9116054 9116725 -218407853 - L1MD1 LINE L1 -2405 4135 3397 * 416 170 7 54 chr3 9116738 9116830 -218407748 - L1MD1 LINE L1 -3962 2578 2494 2303 88 0 3 chr3 9116830 9117136 -218407442 - AluSx SINE Alu -7 305 1 416 170 7 54 chr3 9117136 9117190 -218407388 - L1MD1 LINE L1 -4046 2494 2439 1601 229 72 105 chr3 9117240 9117820 -218406758 + MER77 LTR ERV1 41 601 -4 3274 235 170 50 chr3 9117850 9117977 -218406601 - L1MD1 LINE L1 -5137 1403 1293 1734 156 0 11 chr3 9117977 9118259 -218406319 - AluSg SINE Alu -31 279 1 3274 235 170 50 chr3 9118259 9119370 -218405208 - L1MD1 LINE L1 -5247 1293 16 302 326 11 0 chr3 9119555 9119644 -218404934 + L2 LINE L2 3199 3288 -25 322 298 109 32 chr3 9121300 9121548 -218403030 + L1ME4a LINE L1 5842 6108 -13 492 190 84 42 chr3 9122322 9122464 -218402114 + MIR SINE MIR 102 249 -13 198 263 0 0 chr3 9122512 9122550 -218402028 + L2 LINE L2 3251 3288 -25 374 139 14 0 chr3 9122559 9122631 -218401947 + (ATG)n Simple_repeat Simple_repeat 1 73 0 293 368 8 45 chr3 9122679 9122812 -218401766 + MER91A DNA MER1_type 47 174 -22 3639 125 49 16 chr3 9123144 9123776 -218400802 + MER39B LTR ERV1 1 653 0 2302 103 0 0 chr3 9123855 9124156 -218400422 - AluSc SINE Alu -8 301 1 267 304 44 44 chr3 9125639 9125774 -218398804 + MER5C DNA MER1_type 1 135 -189 229 279 66 41 chr3 9126095 9126217 -218398361 - MIR SINE MIR -25 237 113 221 308 56 19 chr3 9126427 9126534 -218398044 + MIR SINE MIR 46 156 -106 265 276 0 13 chr3 9126963 9127039 -218397539 + MIR SINE MIR 172 246 -16 192 360 101 36 chr3 9127212 9127351 -218397227 + MIR3 SINE MIR 16 163 -45 1104 143 32 0 chr3 9127592 9127781 -218396797 - Tigger4(Zombi) DNA MER2_type 0 2731 2537 1557 214 62 10 chr3 9127786 9128090 -218396488 - Tigger4(Zombi) DNA MER2_type -2410 321 2 817 189 60 78 chr3 9129334 9129551 -218395027 + MER20 DNA MER1_type 7 219 0 2323 184 19 17 chr3 9129775 9130243 -218394335 - MER39 LTR ERV1 -6 701 233 253 122 22 89 chr3 9130342 9130432 -218394146 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 771 278 94 74 chr3 9130645 9131185 -218393393 + LTR1B LTR ERV1 39 589 -237 1905 206 43 5 chr3 9132026 9132424 -218392154 + MER34C LTR ERV1 172 584 -1 503 240 25 8 chr3 9132425 9132546 -218392032 + MIR SINE MIR 116 238 -24 214 343 0 0 chr3 9132554 9132624 -218391954 + MIR SINE MIR 193 262 0 1374 134 44 19 chr3 9133285 9133720 -218390858 + LTR54 LTR ERV1 2 508 -2 189 395 98 14 chr3 9134159 9134506 -218390072 - L2 LINE L2 -4 3309 2934 406 322 94 55 chr3 9134561 9134597 -218389981 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 9134597 9134622 -218389956 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 406 322 94 55 chr3 9134622 9135054 -218389524 - L2 LINE L2 -498 2816 2363 517 375 11 23 chr3 9135084 9135231 -218389347 - L3 LINE CR1 -473 1104 960 869 228 105 40 chr3 9135231 9135631 -218388947 + LTR37A LTR ERV1 1 426 0 517 375 11 23 chr3 9135631 9135747 -218388831 - L3 LINE CR1 -617 960 844 835 114 16 0 chr3 9135859 9135982 -218388596 + AluSp/q SINE Alu 177 301 -12 301 283 40 0 chr3 9136532 9136626 -218387952 - MER34 LTR ERV1 0 542 445 338 222 0 28 chr3 9136626 9136698 -218387880 - Tigger5 DNA MER2_type 0 2323 2254 236 213 0 98 chr3 9136707 9136768 -218387810 - Tigger5 DNA MER2_type -2268 55 1 266 146 107 117 chr3 9136768 9136855 -218387723 - LTR49 LTR ERV1 -90 505 420 2219 187 69 16 chr3 9136855 9137449 -218387129 + MER39 LTR ERV1 1 707 0 548 250 57 39 chr3 9137449 9137815 -218386763 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 9137959 9137980 -218386598 + AT_rich Low_complexity Low_complexity 1 21 0 1707 180 7 7 chr3 9138489 9138795 -218385783 + AluJo SINE Alu 1 306 -6 200 85 21 43 chr3 9140216 9140263 -218384315 + (TAA)n Simple_repeat Simple_repeat 2 47 0 615 179 15 45 chr3 9140595 9140729 -218383849 - FLAM_A SINE Alu -3 130 1 1773 232 73 13 chr3 9140913 9141508 -218383070 + MER39 LTR ERV1 1 707 0 24 53 0 0 chr3 9141774 9141812 -218382766 + AT_rich Low_complexity Low_complexity 1 38 0 2235 109 0 3 chr3 9142780 9143092 -218381486 - AluSx SINE Alu -1 311 1 627 225 55 69 chr3 9143752 9143970 -218380608 + MER58C DNA MER1_type 1 215 0 232 250 89 0 chr3 9144333 9144389 -218380189 - L2 LINE L2 -73 3240 3180 1024 206 5 0 chr3 9144978 9145182 -218379396 - MER3 DNA MER1_type -4 205 1 277 257 128 0 chr3 9145423 9145532 -218379046 - L1ME3A LINE L1 -8 6162 6040 2346 75 0 0 chr3 9146801 9147094 -218377484 + AluY SINE Alu 1 293 -18 234 0 0 0 chr3 9147413 9147439 -218377139 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 237 33 0 0 chr3 9147438 9147468 -218377110 + (GA)n Simple_repeat Simple_repeat 1 30 0 309 322 66 16 chr3 9147469 9147590 -218376988 + L2 LINE L2 3187 3313 0 185 333 43 21 chr3 9147897 9147990 -218376588 + MIR SINE MIR 73 167 -95 3042 197 22 35 chr3 9148168 9149089 -218375489 + L1MA6 LINE L1 4654 5585 -715 2057 67 0 4 chr3 9149089 9149358 -218375220 - AluY SINE Alu -7 304 37 3042 197 22 35 chr3 9149358 9149633 -218374945 + L1MA6 LINE L1 5585 5862 -438 216 0 0 0 chr3 9149633 9149657 -218374921 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 300 27 0 0 chr3 9149656 9149693 -218374885 + (CA)n Simple_repeat Simple_repeat 1 37 0 3042 197 22 35 chr3 9149657 9150198 -218374380 + L1MA6 LINE L1 5862 6300 0 460 299 199 19 chr3 9151223 9151434 -218373144 + MIR SINE MIR 13 261 -1 222 325 136 26 chr3 9151801 9151955 -218372623 + MIR3 SINE MIR 29 199 -9 1120 245 66 23 chr3 9152406 9152753 -218371825 - MLT1A1 LTR MaLR -3 362 1 2259 110 7 0 chr3 9153219 9153528 -218371050 + AluSq SINE Alu 1 311 -2 1376 162 78 60 chr3 9153539 9153872 -218370706 - MER44D DNA MER2_type 0 609 1 1504 196 25 71 chr3 9154252 9154644 -218369934 + MLT1A2 LTR MaLR 1 374 0 1057 203 5 5 chr3 9155034 9155231 -218369347 + AluJo SINE Alu 104 300 -12 451 292 37 33 chr3 9155269 9155696 -218368882 + L1ME LINE L1 5204 5636 -534 1509 167 0 116 chr3 9156063 9156416 -218368162 + AluJo SINE Alu 1 312 0 474 242 75 17 chr3 9157628 9157748 -218366830 - L2 LINE L2 0 3313 3187 236 324 56 19 chr3 9158342 9158450 -218366128 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 9158515 9158554 -218366024 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 9159146 9159174 -218365404 + AT_rich Low_complexity Low_complexity 1 28 0 2296 104 0 0 chr3 9159974 9160272 -218364306 - AluSx SINE Alu -14 298 1 606 256 102 76 chr3 9160279 9160700 -218363878 - L1ME2 LINE L1 -1 6163 5732 388 242 40 32 chr3 9161821 9161945 -218362633 + MIR SINE MIR 94 218 -44 371 356 94 32 chr3 9162445 9162998 -218361580 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 9163506 9163904 -218360674 - MSTA LTR MaLR 0 428 1 9133 154 6 35 chr3 9163904 9165529 -218359049 - MSTA-int LTR MaLR 0 1580 3 2181 131 79 22 chr3 9165531 9165936 -218358642 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 9166620 9166663 -218357915 + (GA)n Simple_repeat Simple_repeat 2 44 0 273 314 12 12 chr3 9166720 9166806 -218357772 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 9167254 9167361 -218357217 + MIR SINE MIR 30 138 -70 193 267 133 13 chr3 9168178 9168253 -218356325 - MIR SINE MIR -11 251 168 433 224 97 30 chr3 9168674 9168911 -218355667 + HAL1b LINE L1 909 1161 -187 352 341 65 14 chr3 9169690 9169907 -218354671 - MIR SINE MIR -15 247 20 1706 219 88 17 chr3 9169959 9170346 -218354232 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 9170346 9170382 -218354196 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 219 88 17 chr3 9170382 9170415 -218354163 + MLT2C2 LTR ERVL 432 461 -3 2224 115 51 28 chr3 9170751 9171107 -218353471 - THE1B LTR MaLR 0 364 1 11219 108 4 4 chr3 9171108 9172686 -218351892 - THE1B-int LTR MaLR -1 1579 1 2195 133 0 0 chr3 9172715 9173024 -218351554 - AluSc SINE Alu 0 309 1 2048 135 51 31 chr3 9173024 9173380 -218351198 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 9173510 9173594 -218350984 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 9173594 9174099 -218350479 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 9174099 9174388 -218350190 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 9175009 9175198 -218349380 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 9175934 9175986 -218348592 + GA-rich Low_complexity Low_complexity 1 52 0 2276 161 57 0 chr3 9176197 9176602 -218347976 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 9176602 9178140 -218346438 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 9178164 9178576 -218346002 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 9179245 9179469 -218345109 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 9179559 9179630 -218344948 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 9180037 9180177 -218344401 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 9180208 9180396 -218344182 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 9180537 9181134 -218343444 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 9182062 9182337 -218342241 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 9182706 9182841 -218341737 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 9182841 9184115 -218340463 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 9184115 9184151 -218340427 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 9184181 9184324 -218340254 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 9184658 9184946 -218339632 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 9184953 9185118 -218339460 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 9186209 9186369 -218338209 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 9187611 9187963 -218336615 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 9189069 9189095 -218335483 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 9189187 9189611 -218334967 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 9189761 9189897 -218334681 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 9190609 9190919 -218333659 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 9191002 9191164 -218333414 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 9192654 9192775 -218331803 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 9192944 9193013 -218331565 + GA-rich Low_complexity Low_complexity 3 70 0 7415 32 2 0 chr3 9193307 9194496 -218330082 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 9194663 9194748 -218329830 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 9195058 9195339 -218329239 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 9195792 9195826 -218328752 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 9195841 9195884 -218328694 + (TA)n Simple_repeat Simple_repeat 1 43 0 214 244 0 0 chr3 9196006 9196047 -218328531 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 9196105 9196155 -218328423 + (TA)n Simple_repeat Simple_repeat 1 51 0 1522 174 144 17 chr3 9196436 9196797 -218327781 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 9197110 9197174 -218327404 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 9197683 9197718 -218326860 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 9197718 9197758 -218326820 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 9197758 9198110 -218326468 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 9198110 9198634 -218325944 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 9198621 9198849 -218325729 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 9198880 9199070 -218325508 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 9199074 9199931 -218324647 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 9199976 9200260 -218324318 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 9200272 9201899 -218322679 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 9202334 9202644 -218321934 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 9203414 9203508 -218321070 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 9203519 9203899 -218320679 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 9204134 9204383 -218320195 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 9204786 9204814 -218319764 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr3 9204875 9204910 -218319668 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1157 101 6 24 chr3 9204916 9205085 -218319493 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 9206590 9206618 -218317960 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 9207614 9207709 -218316869 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 9208193 9208220 -218316358 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 9209099 9209403 -218315175 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 9209401 9209482 -218315096 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9209480 9209561 -218315017 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9209559 9209640 -218314938 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9209638 9209719 -218314859 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9209717 9209798 -218314780 + L1PA15 LINE L1 1489 1570 -5217 * 15280 210 21 16 chr3 9209796 9214282 -218310296 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 9214282 9214576 -218310002 + AluSg SINE Alu 2 296 -14 15280 210 21 16 chr3 9214576 9215383 -218309195 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 9215407 9215453 -218309125 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9216378 9216623 -218307955 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9217649 9217719 -218306859 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9217950 9218623 -218305955 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9218616 9219008 -218305570 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9219009 9219093 -218305485 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9219355 9219574 -218305004 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9219829 9219850 -218304728 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9220529 9220665 -218303913 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9221504 9221733 -218302845 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9221905 9222093 -218302485 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 9222099 9222267 -218302311 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 9222229 9222402 -218302176 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9222591 9222720 -218301858 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9222750 9222924 -218301654 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9223009 9223073 -218301505 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9224017 9224045 -218300533 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9224045 9224087 -218300491 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9224984 9225209 -218299369 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9225358 9225379 -218299199 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9225379 9225673 -218298905 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9226463 9226642 -218297936 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9227041 9227068 -218297510 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9227068 9227419 -218297159 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9227419 9227559 -218297019 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9227624 9227655 -218296923 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9227726 9227907 -218296671 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9227982 9228039 -218296539 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9228046 9228615 -218295963 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9228615 9229098 -218295480 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9229098 9230196 -218294382 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9230245 9230349 -218294229 - MER5B DNA MER1_type -71 107 7 2539 49 7 0 chr3 9230589 9230896 -218293682 + AluY SINE Alu 2 310 -1 300 91 0 0 chr3 9231870 9231914 -218292664 + (TG)n Simple_repeat Simple_repeat 1 44 0 1974 169 31 6 chr3 9231916 9232271 -218292307 - THE1B LTR MaLR 0 364 1 247 281 0 0 chr3 9232355 9232412 -218292166 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9233789 9234010 -218290568 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9234441 9234476 -218290102 + AT_rich Low_complexity Low_complexity 1 35 0 2089 148 14 6 chr3 9237002 9237361 -218287217 - L1MA5 LINE L1 -478 5822 5461 2376 172 9 13 chr3 9237365 9237825 -218286753 + L1MA5 LINE L1 5843 6300 0 1033 301 32 60 chr3 9238011 9238508 -218286070 + MLT1H LTR MaLR 1 549 0 3721 169 4 7 chr3 9238913 9239605 -218284973 + L1MB1 LINE L1 5479 6168 0 869 179 104 112 chr3 9239680 9239843 -218284735 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9239843 9240225 -218284353 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9240225 9240408 -218284170 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9240438 9240512 -218284066 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9240881 9240946 -218283632 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9242921 9243118 -218281460 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9243174 9243454 -218281124 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9243454 9243481 -218281097 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2331 106 0 0 chr3 9244815 9245127 -218279451 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9245763 9246063 -218278515 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9246116 9246214 -218278364 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9247157 9247267 -218277311 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9247267 9247350 -218277228 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 9247374 9247767 -218276811 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9247964 9248253 -218276325 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9249214 9249463 -218275115 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9249834 9249855 -218274723 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9250004 9250067 -218274511 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9251002 9251032 -218273546 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9251780 9251911 -218272667 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9253064 9253169 -218271409 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9254495 9254769 -218269809 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9254769 9255066 -218269512 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9255066 9255108 -218269470 + L1ME4a LINE L1 5908 5949 -172 3134 167 86 28 chr3 9255108 9255795 -218268783 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9255795 9255899 -218268679 + L1ME4a LINE L1 5949 6052 -69 439 349 108 4 chr3 9256503 9256781 -218267797 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9256875 9257648 -218266930 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9258019 9258097 -218266481 + AT_rich Low_complexity Low_complexity 1 78 0 353 195 0 11 chr3 9258286 9258373 -218266205 + CT-rich Low_complexity Low_complexity 2 87 0 2448 63 0 0 chr3 9258885 9259187 -218265391 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9259584 9259884 -218264694 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9261250 9261321 -218263257 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9261479 9261509 -218263069 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9261803 9261934 -218262644 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9261848 9261954 -218262624 + MER5A DNA MER1_type 68 186 -3 * 334 310 35 35 chr3 9261984 9262100 -218262478 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9262108 9262192 -218262386 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9262313 9262365 -218262213 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9263832 9264186 -218260392 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9264317 9264352 -218260226 + AT_rich Low_complexity Low_complexity 1 35 0 4752 182 26 40 chr3 9264662 9265553 -218259025 + L1MA4 LINE L1 4422 5325 -975 1944 131 40 0 chr3 9265553 9265850 -218258728 + AluSx SINE Alu 1 309 -3 4752 182 26 40 chr3 9265850 9266633 -218257945 + L1MA4 LINE L1 5325 6081 -219 2184 102 7 3 chr3 9266633 9266927 -218257651 + AluSx SINE Alu 1 295 -17 4752 182 26 40 chr3 9266927 9267138 -218257440 + L1MA4 LINE L1 6081 6294 -6 771 314 89 14 chr3 9267153 9267637 -218256941 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9268122 9268600 -218255978 + L1ME4a LINE L1 4168 4659 -1487 306 290 41 14 chr3 9268707 9268852 -218255726 + L1ME4a LINE L1 4804 4952 -1194 302 239 67 110 chr3 9269066 9269275 -218255303 + L1ME4a LINE L1 5259 5458 -2350 318 310 57 78 chr3 9269286 9269567 -218255011 + L1ME4a LINE L1 5509 5783 -2025 419 264 183 10 chr3 9270695 9270899 -218253679 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9270918 9270940 -218253638 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2921 86 8 0 chr3 9270940 9271337 -218253241 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9273018 9273047 -218251531 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9273076 9273223 -218251355 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9273225 9273377 -218251201 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9273380 9273576 -218251002 - MER63A DNA MER1_type 0 210 1 41706 39 23 1 chr3 9273817 9279779 -218244799 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9279817 9279838 -218244740 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9281355 9281380 -218243198 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9281492 9281612 -218242966 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9283845 9283939 -218240639 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9284525 9284734 -218239844 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9284849 9284992 -218239586 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9284992 9285035 -218239543 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9285242 9285544 -218239034 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9285820 9286045 -218238533 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9287969 9288004 -218236574 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9288004 9288314 -218236264 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9288314 9288444 -218236134 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9288721 9289340 -218235238 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9289363 9289563 -218235015 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9289652 9289960 -218234618 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9290059 9290113 -218234465 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9290171 9290552 -218234026 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9290612 9290705 -218233873 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9290846 9291062 -218233516 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9291831 9291859 -218232719 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9292662 9292793 -218231785 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9292979 9293064 -218231514 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9293096 9293383 -218231195 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9293445 9293641 -218230937 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9294246 9294634 -218229944 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9297065 9297098 -218227480 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9297129 9297372 -218227206 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9297459 9298359 -218226219 - L1MC2 LINE L1 -9 6335 5408 213 65 0 0 chr3 9301222 9301253 -218223325 + (T)n Simple_repeat Simple_repeat 1 31 0 1962 192 31 17 chr3 9302020 9302442 -218222136 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9302500 9302718 -218221860 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9302857 9303609 -218220969 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9303624 9303680 -218220898 - MLT1H LTR MaLR -379 170 116 2016 108 21 10 chr3 9303680 9303968 -218220610 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9303968 9304066 -218220512 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9304576 9304616 -218219962 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9304999 9305030 -218219548 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9305533 9305734 -218218844 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9305994 9306018 -218218560 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9306479 9307366 -218217212 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9307366 9307551 -218217027 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9307559 9308009 -218216569 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9308068 9308137 -218216441 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9308137 9308403 -218216175 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9308403 9308989 -218215589 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9309436 9309604 -218214974 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9311486 9311686 -218212892 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9311785 9312063 -218212515 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9312113 9312134 -218212444 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9312743 9313055 -218211523 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9314597 9314766 -218209812 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9314766 9314896 -218209682 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9314896 9314981 -218209597 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9315123 9315192 -218209386 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9315594 9315898 -218208680 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9316029 9316169 -218208409 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9316302 9316475 -218208103 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9316965 9317350 -218207228 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9317357 9317424 -218207154 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9319311 9319421 -218205157 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9319439 9319558 -218205020 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9319628 9319859 -218204719 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9320089 9320226 -218204352 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9320344 9320855 -218203723 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9320901 9320968 -218203610 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9322359 9322616 -218201962 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9323198 9323496 -218201082 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9323551 9323627 -218200951 + L2 LINE L2 3188 3263 -9 2458 151 2 28 chr3 9323706 9324129 -218200449 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9325393 9325421 -218199157 + (A)n Simple_repeat Simple_repeat 1 28 0 1479 144 0 132 chr3 9326771 9327098 -218197480 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9327102 9327151 -218197427 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9327151 9327462 -218197116 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9327462 9327756 -218196822 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9327778 9328182 -218196396 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9328650 9328753 -218195825 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9330408 9330472 -218194106 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9330687 9330742 -218193836 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9331084 9331178 -218193400 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9332247 9332318 -218192260 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9332452 9332753 -218191825 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9332799 9332842 -218191736 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9332995 9333170 -218191408 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9333276 9333431 -218191147 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9334482 9334759 -218189819 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9336443 9336728 -218187850 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9337461 9337585 -218186993 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9337601 9337859 -218186719 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9338475 9339175 -218185403 - L1PA4 LINE L1 -202 5953 5254 1605 57 9 0 chr3 9339183 9339395 -218185183 + L1PA4 LINE L1 5942 6155 0 2101 121 3 3 chr3 9339794 9340092 -218184486 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9342365 9342423 -218182155 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9343330 9343384 -218181194 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9343434 9343498 -218181080 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9343508 9343604 -218180974 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9343755 9344029 -218180549 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9344035 9344123 -218180455 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9344185 9344337 -218180241 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9344363 9344773 -218179805 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9345365 9345397 -218179181 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9345405 9345771 -218178807 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9345879 9345996 -218178582 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9345996 9346302 -218178276 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9346302 9346711 -218177867 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9346905 9347130 -218177448 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9347130 9347548 -218177030 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9347548 9347940 -218176638 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9347950 9348017 -218176561 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9348017 9348401 -218176177 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9348401 9348905 -218175673 - MER31-int LTR ERV1 -3678 1258 783 2390 53 0 3 chr3 9349070 9349354 -218175224 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9349901 9349924 -218174654 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1834 131 7 7 chr3 9349925 9350199 -218174379 - AluSx SINE Alu -36 276 3 613 264 51 43 chr3 9350281 9350481 -218174097 - MER34 LTR ERV1 0 542 338 2848 177 91 56 chr3 9350481 9351183 -218173395 + LTR8A LTR ERV1 1 727 0 613 264 51 43 chr3 9351183 9351217 -218173361 - MER34 LTR ERV1 -204 338 306 488 259 76 19 chr3 9351266 9351424 -218173154 - MER34 LTR ERV1 -375 167 1 1817 215 60 115 chr3 9352164 9352954 -218171624 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9353331 9353368 -218171210 + AT_rich Low_complexity Low_complexity 1 37 0 658 254 78 15 chr3 9353742 9353947 -218170631 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9354798 9355000 -218169578 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9355323 9355632 -218168946 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9355635 9355862 -218168716 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9356242 9356428 -218168150 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9356504 9356566 -218168012 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9356632 9356966 -218167612 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9356966 9357279 -218167299 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9357279 9357534 -218167044 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9357555 9357686 -218166892 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9357968 9358115 -218166463 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9358744 9359518 -218165060 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9359669 9359757 -218164821 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9359823 9359850 -218164728 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9359854 9360053 -218164525 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9360141 9360237 -218164341 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9360237 9360531 -218164047 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9360531 9361131 -218163447 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9361129 9361314 -218163264 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9361338 9361383 -218163195 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9361398 9361579 -218162999 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9361674 9362450 -218162128 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9362852 9362935 -218161643 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9363495 9363679 -218160899 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9363685 9363774 -218160804 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9363792 9363906 -218160672 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9364142 9364258 -218160320 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9364258 9364433 -218160145 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9364764 9364936 -218159642 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9364936 9365232 -218159346 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9365232 9365568 -218159010 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9366177 9366264 -218158314 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9366343 9366391 -218158187 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9366408 9366493 -218158085 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9367807 9367942 -218156636 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9368454 9368660 -218155918 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9368838 9368931 -218155647 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9368951 9369069 -218155509 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9369126 9369154 -218155424 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9369179 9369209 -218155369 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9369349 9369468 -218155110 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9370708 9370764 -218153814 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9372754 9372880 -218151698 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9375945 9376032 -218148546 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9376519 9376819 -218147759 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9377735 9377965 -218146613 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9378862 9379055 -218145523 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9379261 9379295 -218145283 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9379296 9379365 -218145213 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9379482 9379600 -218144978 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9379614 9379694 -218144884 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9379694 9379767 -218144811 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9379771 9380638 -218143940 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9380648 9380707 -218143871 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9381016 9381047 -218143531 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9382039 9382106 -218142472 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9382160 9382774 -218141804 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9382774 9383065 -218141513 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9383091 9383316 -218141262 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9383677 9383917 -218140661 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9384164 9384387 -218140191 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9384975 9385332 -218139246 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9385540 9385569 -218139009 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9385678 9385974 -218138604 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9386292 9386594 -218137984 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9386797 9386855 -218137723 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9387502 9387546 -218137032 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9388062 9388109 -218136469 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9388335 9388476 -218136102 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9388480 9388641 -218135937 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9388775 9388958 -218135620 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9388969 9389141 -218135437 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9389208 9389268 -218135310 - L2 LINE L2 -218 3054 2997 26 74 0 0 chr3 9390584 9390638 -218133940 + AT_rich Low_complexity Low_complexity 1 54 0 3179 71 7 0 chr3 9390822 9391247 -218133331 - L1PA10 LINE L1 0 6168 5741 989 93 42 3 chr3 9391248 9391440 -218133138 + L1P4 LINE L1 5254 5430 -738 297 0 0 0 chr3 9391614 9391647 -218132931 + (TG)n Simple_repeat Simple_repeat 2 34 0 800 230 0 0 chr3 9392091 9392256 -218132322 + FRAM SINE Alu 1 164 -12 351 298 132 38 chr3 9392384 9392931 -218131647 - L1ME4a LINE L1 -204 5917 5320 35 78 0 0 chr3 9392953 9393030 -218131548 + AT_rich Low_complexity Low_complexity 1 77 0 374 253 24 0 chr3 9393964 9394047 -218130531 + L3 LINE CR1 1393 1477 -100 218 262 0 0 chr3 9394236 9394278 -218130300 + MIR SINE MIR 78 119 -89 2270 120 0 0 chr3 9394282 9394590 -218129988 - AluSg SINE Alu -2 308 1 2542 198 2 10 chr3 9394795 9395285 -218129293 - MER66B LTR ERV1 0 486 1 1158 161 55 0 chr3 9395642 9395788 -218128790 - L1MA9 LINE L1 -2 6310 6145 234 62 0 0 chr3 9395788 9395820 -218128758 + (TG)n Simple_repeat Simple_repeat 1 32 0 1158 161 55 0 chr3 9395820 9395909 -218128669 - L1MA9 LINE L1 -167 6145 6062 1675 93 4 39 chr3 9395945 9396202 -218128376 + L1PA6 LINE L1 5907 6154 0 249 33 0 0 chr3 9396463 9396493 -218128085 + (TAA)n Simple_repeat Simple_repeat 1 30 0 285 258 89 57 chr3 9396516 9396640 -218127938 - MIR SINE MIR -44 218 91 32510 38 0 0 chr3 9396925 9401837 -218122741 - L1PA3 LINE L1 -3 6152 1239 313 354 31 15 chr3 9401837 9401967 -218122611 + LTR67 LTR ERVL 110 241 -316 315 284 9 0 chr3 9402098 9402207 -218122371 + LTR67 LTR ERVL 435 544 -13 318 50 0 0 chr3 9402673 9402713 -218121865 + (ATG)n Simple_repeat Simple_repeat 2 41 0 206 338 188 6 chr3 9402722 9402882 -218121696 - MIR SINE MIR -10 252 64 336 200 0 0 chr3 9404225 9404305 -218120273 + (TA)n Simple_repeat Simple_repeat 2 81 0 441 287 54 0 chr3 9405154 9405283 -218119295 - MIR SINE MIR -68 194 59 802 209 70 0 chr3 9406940 9407112 -218117466 + MER5A DNA MER1_type 4 187 -2 300 258 281 6 chr3 9407143 9407321 -218117257 + MIR SINE MIR 34 260 -2 722 304 25 21 chr3 9407596 9407833 -218116745 - LTR33 LTR ERVL -239 282 45 625 179 172 13 chr3 9408391 9408542 -218116036 + FRAM SINE Alu 2 176 0 291 317 63 0 chr3 9408635 9408777 -218115801 + MIR SINE MIR 55 205 -57 267 336 69 8 chr3 9408839 9408970 -218115608 - MIR SINE MIR 0 262 124 206 360 0 20 chr3 9409510 9409610 -218114968 - MIR SINE MIR -66 142 45 2405 82 0 28 chr3 9411010 9411328 -218113250 + AluSc SINE Alu 1 309 0 235 258 45 0 chr3 9411444 9411533 -218113045 + T-rich Low_complexity Low_complexity 4 96 0 288 0 0 0 chr3 9412543 9412575 -218112003 + (CA)n Simple_repeat Simple_repeat 2 33 0 469 305 97 26 chr3 9413212 9413707 -218110871 - L1ME LINE L1 -378 5784 5255 510 298 94 12 chr3 9414003 9414174 -218110404 + MIR SINE MIR 11 195 -67 368 314 66 62 chr3 9414319 9414416 -218110162 - L1ME LINE L1 -1306 4840 4745 1388 227 14 7 chr3 9414416 9414711 -218109867 - AluJo SINE Alu -15 297 1 368 314 66 62 chr3 9414711 9415647 -218108931 - L1ME LINE L1 -1401 4745 3803 338 275 169 38 chr3 9415666 9415826 -218108752 - MLT1A1 LTR MaLR 0 549 369 21 0 0 0 chr3 9416512 9416533 -218108045 + AT_rich Low_complexity Low_complexity 1 21 0 877 163 0 6 chr3 9416544 9416710 -218107868 - L1MA10 LINE L1 -3 6331 6167 710 199 8 0 chr3 9416766 9416897 -218107681 - FLAM_C SINE Alu -1 132 1 207 350 48 10 chr3 9417168 9417271 -218107307 - MIR3 SINE MIR -1 207 101 322 336 28 28 chr3 9418152 9418295 -218106283 - MIR3 SINE MIR -61 147 5 260 363 44 0 chr3 9419130 9419243 -218105335 + L2 LINE L2 3155 3272 0 396 298 29 41 chr3 9419941 9420112 -218104466 - MLT1J2 LTR MaLR -3 447 279 474 252 9 0 chr3 9420313 9420424 -218104154 + FLAM_A SINE Alu 16 127 -15 217 299 13 0 chr3 9420916 9420993 -218103585 - L3b LINE CR1 -325 1258 1181 442 244 25 44 chr3 9421890 9422050 -218102528 + MER103 DNA DNA 8 164 -2 263 378 61 6 chr3 9422133 9422313 -218102265 - L3 LINE CR1 -13 1564 1375 2213 101 3 0 chr3 9424105 9424393 -218100185 - AluSg SINE Alu -21 289 1 314 308 140 0 chr3 9425810 9425917 -218098661 - L2 LINE L2 -1 3312 3191 1685 191 62 0 chr3 9426146 9426471 -218098107 - MLT1A1 LTR MaLR -20 345 1 602 262 107 5 chr3 9426737 9426924 -218097654 + MIR SINE MIR 56 261 -1 242 284 30 0 chr3 9427839 9427906 -218096672 - MIR SINE MIR -66 142 74 419 248 17 26 chr3 9428149 9428266 -218096312 + MIR SINE MIR 45 160 -102 264 305 0 0 chr3 9428279 9428338 -218096240 - L2 LINE L2 0 3272 3214 264 250 89 27 chr3 9428516 9428628 -218095950 + MIR SINE MIR 84 202 -60 1985 116 0 31 chr3 9428878 9429200 -218095378 - AluSx SINE Alu 0 313 1 24 32 0 0 chr3 9429453 9429484 -218095094 + AT_rich Low_complexity Low_complexity 1 31 0 1952 131 7 10 chr3 9429965 9430263 -218094315 + AluSx SINE Alu 1 297 -15 200 262 98 0 chr3 9431806 9431867 -218092711 - MIR SINE MIR -116 146 80 2084 142 3 0 chr3 9432696 9433007 -218091571 - AluSx SINE Alu 0 312 1 192 194 0 0 chr3 9433034 9433065 -218091513 + MIR SINE MIR 120 150 -58 281 339 34 17 chr3 9433686 9433804 -218090774 + MIR SINE MIR 34 143 -65 710 254 0 44 chr3 9434069 9434250 -218090328 + MER5B DNA MER1_type 1 173 -5 237 98 0 0 chr3 9435002 9435043 -218089535 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 826 337 78 20 chr3 9435241 9435731 -218088847 - L3 LINE CR1 -3 1574 1057 21 57 0 0 chr3 9435823 9435858 -218088720 + AT_rich Low_complexity Low_complexity 1 35 0 320 284 35 30 chr3 9436425 9436594 -218087984 - L1ME LINE L1 -295 5826 5657 2079 127 0 0 chr3 9436838 9437114 -218087464 + AluSx SINE Alu 1 276 -36 752 18 9 28 chr3 9437122 9437231 -218087347 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 616 284 60 18 chr3 9437354 9437685 -218086893 - L1ME4a LINE L1 -157 5964 5620 26 30 0 0 chr3 9438169 9438202 -218086376 + AT_rich Low_complexity Low_complexity 1 33 0 388 337 61 6 chr3 9439760 9439941 -218084637 + MIR SINE MIR 32 222 -40 274 294 25 68 chr3 9440856 9441019 -218083559 + MER117 DNA MER1_type 1 156 -41 342 302 40 16 chr3 9441397 9441523 -218083055 + L2 LINE L2 3158 3286 -27 210 300 0 0 chr3 9441563 9441613 -218082965 - L2 LINE L2 -82 3231 3182 2270 119 0 0 chr3 9442436 9442747 -218081831 - AluSx SINE Alu -1 311 1 211 302 157 34 chr3 9444305 9444573 -218080005 - L2 LINE L2 -630 2684 2384 281 278 26 26 chr3 9444628 9444743 -218079835 - MER103 DNA DNA -46 120 6 1932 232 58 109 chr3 9445181 9445350 -218079228 + LTR41 LTR ERVL 1 177 -596 2062 108 0 51 chr3 9445350 9445701 -218078877 - AluSx SINE Alu 0 312 1 1932 232 58 109 chr3 9445701 9446337 -218078241 + LTR41 LTR ERVL 177 765 -8 328 223 28 137 chr3 9446431 9446642 -218077936 - L1ME LINE L1 -296 5825 5638 471 332 55 14 chr3 9447546 9447766 -218076812 - MIR SINE MIR 0 262 34 24 32 0 0 chr3 9449768 9449799 -218074779 + AT_rich Low_complexity Low_complexity 1 31 0 2177 103 0 0 chr3 9449800 9450082 -218074496 - AluSc SINE Alu -27 282 1 269 246 0 0 chr3 9451407 9451476 -218073102 + (TTCA)n Simple_repeat Simple_repeat 4 72 0 216 269 58 39 chr3 9451867 9451971 -218072607 + MIR SINE MIR 108 213 -49 408 200 36 9 chr3 9451971 9452081 -218072497 - L1MA10 LINE L1 -3 6331 6219 5108 250 63 21 chr3 9452192 9454768 -218069810 - L1ME1 LINE L1 -281 5954 3277 * 41320 44 5 2 chr3 9454747 9460883 -218063695 - L1PA4 LINE L1 0 6224 70 2197 219 139 16 chr3 9460882 9461714 -218062864 - L1ME1 LINE L1 -2897 3318 2384 * 340 113 0 0 chr3 9461720 9461782 -218062796 - L1ME1 LINE L1 -4143 2253 2192 1886 262 74 15 chr3 9461788 9462395 -218062183 - L1ME1 LINE L1 -5649 747 96 188 0 0 69 chr3 9462395 9462424 -218062154 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1886 262 74 15 chr3 9462424 9462480 -218062098 - L1ME1 LINE L1 -6300 96 45 425 350 48 27 chr3 9462701 9463032 -218061546 - MLT1J2 LTR MaLR 0 450 113 288 250 0 24 chr3 9463547 9463631 -218060947 + MIR SINE MIR 166 247 -15 1065 144 18 1 chr3 9463831 9464081 -218060497 - L1MA4A LINE L1 -56 6247 6014 412 308 151 0 chr3 9464341 9464526 -218060052 + MIR SINE MIR 50 262 0 239 250 65 28 chr3 9464627 9464735 -218059843 + MIR SINE MIR 113 224 -38 186 43 0 0 chr3 9464861 9464884 -218059694 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2117 111 7 3 chr3 9464946 9465244 -218059334 + AluSx SINE Alu 1 299 -13 1885 171 3 0 chr3 9465255 9465548 -218059030 + AluSg SINE Alu 1 294 -16 191 365 24 0 chr3 9467457 9467542 -218057036 - L2 LINE L2 -47 3225 3139 225 287 98 0 chr3 9467689 9467704 -218056874 - L1MA10 LINE L1 -3 6331 6317 911 233 93 85 chr3 9467704 9467760 -218056818 - L1ME2 LINE L1 -8 6154 6100 198 103 0 0 chr3 9467760 9467789 -218056789 + (TG)n Simple_repeat Simple_repeat 2 30 0 911 233 93 85 chr3 9467789 9468259 -218056319 - L1ME2 LINE L1 -62 6100 5617 446 284 57 7 chr3 9468785 9468926 -218055652 - MIR SINE MIR -18 244 97 24 0 0 0 chr3 9469015 9469039 -218055539 + AT_rich Low_complexity Low_complexity 1 24 0 2356 320 127 25 chr3 9470105 9471757 -218052821 + L2 LINE L2 47 1865 -1449 190 289 134 35 chr3 9471845 9471987 -218052591 + L2 LINE L2 3158 3313 0 423 250 62 0 chr3 9472334 9472446 -218052132 - MIR SINE MIR -142 120 2 608 197 142 0 chr3 9473173 9473300 -218051278 + FRAM SINE Alu 2 146 -30 403 211 65 16 chr3 9473361 9473484 -218051094 + MER104 DNA Tc2 40 168 -12 1064 190 23 31 chr3 9473857 9474115 -218050463 - MLT1A1 LTR MaLR 0 365 110 1968 138 0 52 chr3 9475002 9475327 -218049251 - AluJb SINE Alu -4 308 1 195 379 35 0 chr3 9475718 9475805 -218048773 + L3 LINE CR1 1468 1557 -20 438 298 61 33 chr3 9476500 9476681 -218047897 + MIR SINE MIR 12 197 -65 246 83 0 0 chr3 9476744 9476780 -218047798 - Alu SINE Alu -94 81 46 1769 173 3 22 chr3 9476869 9477187 -218047391 - AluJo SINE Alu 0 312 1 220 167 0 0 chr3 9477508 9477550 -218047028 + MER5B DNA MER1_type 1 42 -136 1401 211 82 39 chr3 9477715 9478155 -218046423 - MLT1C LTR MaLR -8 459 1 283 272 37 0 chr3 9478166 9478247 -218046331 + MIR SINE MIR 130 213 -49 375 248 20 0 chr3 9478568 9478669 -218045909 - Charlie8 DNA MER1_type -2227 190 88 535 262 0 14 chr3 9478686 9478831 -218045747 - MER63 DNA MER1_type -289 773 5 310 294 54 76 chr3 9479010 9479212 -218045366 - MIR SINE MIR -56 206 5 250 185 0 0 chr3 9480081 9480135 -218044443 + L1MC4 LINE L1 7986 8039 -3 23 54 0 0 chr3 9480170 9480207 -218044371 + AT_rich Low_complexity Low_complexity 1 37 0 659 326 83 42 chr3 9480213 9480390 -218044188 - L2 LINE L2 -511 2803 2635 2384 42 0 11 chr3 9480390 9480707 -218043871 + AluY SINE Alu 1 314 0 659 326 83 42 chr3 9480707 9480865 -218043713 - L2 LINE L2 -679 2635 2453 23 0 0 0 chr3 9480866 9480889 -218043689 + AT_rich Low_complexity Low_complexity 1 23 0 235 204 0 0 chr3 9481006 9481060 -218043518 - L1MC4 LINE L1 -3 8039 7986 559 289 17 8 chr3 9481061 9481296 -218043282 - L1MC4 LINE L1 -141 7901 7665 367 340 102 12 chr3 9482295 9482627 -218041951 - LTR16A LTR ERVL -88 362 1 259 359 90 12 chr3 9482662 9482829 -218041749 + MIR SINE MIR 22 201 -61 309 135 0 0 chr3 9482883 9482935 -218041643 + (TTA)n Simple_repeat Simple_repeat 3 54 0 291 291 60 82 chr3 9482971 9483105 -218041473 - L2 LINE L2 -1 3312 3182 234 189 0 84 chr3 9483107 9483202 -218041376 - L1MC4 LINE L1 -1347 6695 6609 2984 310 76 32 chr3 9483203 9484971 -218039607 - L2 LINE L2 -149 3164 1307 242 333 51 51 chr3 9485074 9485191 -218039387 + MIR3 SINE MIR 44 160 -48 260 157 8 164 chr3 9485230 9485364 -218039214 + MER112 DNA MER1_type 45 157 -103 239 274 95 0 chr3 9485676 9485771 -218038807 + MER102b DNA MER1_type 80 183 -158 238 276 0 31 chr3 9485771 9485869 -218038709 + MER102b DNA MER1_type 247 341 0 300 111 0 0 chr3 9487043 9487097 -218037481 + (TG)n Simple_repeat Simple_repeat 2 55 0 744 249 57 75 chr3 9487671 9488145 -218036433 + MLT1C LTR MaLR 6 626 0 468 118 13 0 chr3 9489419 9489495 -218035083 + MADE1 DNA Mariner 4 80 0 213 180 0 0 chr3 9489808 9489858 -218034720 + CT-rich Low_complexity Low_complexity 3 52 0 4138 142 7 7 chr3 9491387 9492086 -218032492 + L1PA16 LINE L1 5392 6090 -76 1333 272 49 32 chr3 9492210 9492703 -218031875 - L1ME1 LINE L1 -44 6122 5622 2536 96 53 2 chr3 9494771 9495165 -218029413 - L1MA1 LINE L1 0 6302 5889 352 317 49 28 chr3 9495257 9495399 -218029179 - MIR3 SINE MIR -63 145 1 610 187 0 0 chr3 9495628 9495751 -218028827 - L1M3 LINE L1 -677 5491 5369 1422 138 6 99 chr3 9495751 9496085 -218028493 + L1MA10 LINE L1 6018 6320 -14 304 311 82 8 chr3 9496517 9496639 -218027939 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9496744 9496845 -218027733 + CT-rich Low_complexity Low_complexity 3 103 0 752 290 143 35 chr3 9496928 9497569 -218027009 - L2 LINE L2 -32 3281 2563 2367 61 0 42 chr3 9497688 9498001 -218026577 - AluY SINE Alu -11 300 1 241 254 56 0 chr3 9498680 9498751 -218025827 + MER103 DNA DNA 26 100 -66 184 333 51 26 chr3 9499042 9499120 -218025458 - MIR SINE MIR -113 149 70 393 315 112 44 chr3 9499338 9499589 -218024989 + L3 LINE CR1 787 1054 -523 835 196 0 0 chr3 9500615 9500763 -218023815 + FRAM SINE Alu 1 148 -28 249 108 0 0 chr3 9500765 9500802 -218023776 + (CATA)n Simple_repeat Simple_repeat 1 37 0 1621 140 42 30 chr3 9501313 9501649 -218022929 - L1MA9 LINE L1 0 6312 5973 829 309 64 40 chr3 9502154 9502655 -218021923 - LTR33 LTR ERVL -2 519 7 * 2218 112 27 25 chr3 9502652 9503018 -218021560 - THE1C LTR MaLR -8 367 1 324 339 97 27 chr3 9503321 9503507 -218021071 - L2 LINE L2 -643 2671 2473 227 333 43 0 chr3 9504635 9504728 -218019850 + MLT1I LTR MaLR 55 151 -258 831 250 4 44 chr3 9504900 9505128 -218019450 - MER58A DNA MER1_type -5 219 1 268 161 81 16 chr3 9505128 9505188 -218019390 + MLT1I LTR MaLR 342 405 -4 1977 141 0 0 chr3 9505750 9506040 -218018538 - AluY SINE Alu -21 290 1 2536 121 5 3 chr3 9506985 9507357 -218017221 - THE1C LTR MaLR 0 375 3 9413 119 40 48 chr3 9507359 9507550 -218017028 - THE1C-int LTR MaLR 0 1580 1389 2055 121 3 0 chr3 9507550 9507832 -218016746 + AluSq SINE Alu 21 303 -10 9413 119 40 48 chr3 9507832 9509234 -218015344 - THE1C-int LTR MaLR -191 1389 1 2506 106 3 5 chr3 9509237 9509606 -218014972 - THE1C LTR MaLR -7 368 1 1983 144 34 0 chr3 9509861 9510031 -218014547 - AluSx SINE Alu -9 303 117 201 39 0 0 chr3 9510031 9510057 -218014521 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1983 144 34 0 chr3 9510057 9510177 -218014401 - AluSx SINE Alu -195 117 3 451 309 121 12 chr3 9510305 9510554 -218014024 - MLT1I LTR MaLR -28 381 106 1321 167 0 26 chr3 9510842 9511069 -218013509 + AluJb SINE Alu 87 307 -5 312 273 11 23 chr3 9512198 9512286 -218012292 - L2 LINE L2 -21 3292 3206 3687 165 14 26 chr3 9512315 9513085 -218011493 + L1MA7 LINE L1 5530 6290 -1 1669 275 29 13 chr3 9513437 9513961 -218010617 - MLT1F LTR MaLR -10 532 1 350 302 213 22 chr3 9515538 9515763 -218008815 - MLT1K LTR MaLR -287 301 34 320 329 27 32 chr3 9516811 9517001 -218007577 + MIR SINE MIR 2 190 -55 215 259 49 25 chr3 9518602 9518683 -218005895 + MIR SINE MIR 124 206 -56 247 258 75 33 chr3 9518746 9518866 -218005712 - L3b LINE CR1 -171 1412 1288 408 258 158 0 chr3 9518970 9519134 -218005444 - MIR SINE MIR -10 252 63 959 174 14 126 chr3 9519743 9519861 -218004717 - MER31A LTR ERV1 -135 350 220 1781 161 0 20 chr3 9519861 9520159 -218004419 + AluSx SINE Alu 1 292 -20 959 174 14 126 chr3 9520159 9520436 -218004142 - MER31A LTR ERV1 -265 220 11 438 332 24 67 chr3 9520690 9520943 -218003635 + MIR SINE MIR 6 247 -15 595 210 93 122 chr3 9522130 9522442 -218002136 + MER39 LTR ERV1 1 272 -293 1490 228 7 0 chr3 9522442 9522732 -218001846 - AluJo SINE Alu -20 292 1 595 210 93 122 chr3 9522732 9523013 -218001565 + MER39 LTR ERV1 272 560 -5 457 200 104 7 chr3 9523017 9523152 -218001426 - L1MC5 LINE L1 -102 7859 7712 23 0 0 0 chr3 9523196 9523219 -218001359 + AT_rich Low_complexity Low_complexity 1 23 0 530 145 8 113 chr3 9523332 9523456 -218001122 + FLAM_A SINE Alu 6 116 -26 280 231 53 91 chr3 9523486 9523750 -218000828 - L1MC5 LINE L1 -419 7542 7289 182 36 0 36 chr3 9524009 9524037 -218000541 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1733 137 99 4 chr3 9524045 9524308 -218000270 - AluSx SINE Alu -24 288 1 274 326 139 0 chr3 9524388 9524474 -218000104 + L2 LINE L2 3121 3218 -54 1555 95 110 215 chr3 9524497 9525033 -217999545 + LTR12 LTR ERV1 1 480 -234 247 270 0 0 chr3 9525056 9525119 -217999459 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 2199 226 78 4 chr3 9525173 9525700 -217998878 - MLT1F1 LTR MaLR -1 566 1 281 343 0 40 chr3 9525816 9525915 -217998663 + MIR SINE MIR 47 141 -67 1732 193 88 19 chr3 9525916 9526347 -217998231 - LOR1b LTR ERV1 0 461 1 411 268 168 11 chr3 9526389 9526579 -217997999 - MIR SINE MIR 0 262 43 381 311 155 0 chr3 9526613 9526774 -217997804 + MER5A DNA MER1_type 4 189 0 492 254 34 40 chr3 9527302 9527479 -217997099 - MER5B DNA MER1_type -2 176 1 867 172 63 34 chr3 9527714 9527982 -217996596 - MER33 DNA MER1_type -1 323 48 2054 127 0 3 chr3 9528507 9528799 -217995779 + AluSx SINE Alu 1 291 -21 1386 160 43 0 chr3 9528913 9529169 -217995409 - L1MC1 LINE L1 -92 6241 5975 1160 102 25 0 chr3 9529682 9529839 -217994739 - AluSc SINE Alu -148 161 1 1050 148 0 6 chr3 9529913 9530096 -217994482 + L1MC1 LINE L1 5860 6041 -292 194 276 150 39 chr3 9530155 9530282 -217994296 - MER5A DNA MER1_type 0 189 49 202 369 15 0 chr3 9531463 9531528 -217993050 - L2 LINE L2 0 3272 3207 1819 170 10 0 chr3 9531738 9532038 -217992540 + AluJb SINE Alu 1 303 -9 228 67 0 0 chr3 9532049 9532079 -217992499 + (CA)n Simple_repeat Simple_repeat 2 31 0 756 175 37 78 chr3 9532200 9532417 -217992161 - ORSL DNA AcHobo -44 231 24 2072 200 138 30 chr3 9532472 9533182 -217991396 - LTR48 LTR ERV1 0 787 1 600 257 137 8 chr3 9533202 9533500 -217991078 - MLT1C LTR MaLR -6 461 59 1623 205 58 60 chr3 9534543 9535045 -217989533 - MLT1D LTR MaLR -2 503 3 200 375 81 21 chr3 9536560 9536795 -217987783 + L2 LINE L2 2806 3054 -218 261 325 66 13 chr3 9536983 9537134 -217987444 + Charlie8 DNA MER1_type 96 254 -2163 294 255 142 9 chr3 9537765 9537871 -217986707 + L2 LINE L2 3138 3257 -15 595 207 67 56 chr3 9538193 9538372 -217986206 + L1MEc LINE L1 44 224 -6172 1761 239 27 35 chr3 9538375 9538603 -217985975 + L1ME1 LINE L1 5371 5599 -579 3238 163 28 36 chr3 9538603 9538714 -217985864 + L1MB3 LINE L1 5513 5623 -560 2223 136 7 0 chr3 9538714 9539024 -217985554 + AluSx SINE Alu 1 312 0 3238 163 28 36 chr3 9539024 9539586 -217984992 + L1MB3 LINE L1 5623 6181 -2 1761 239 27 35 chr3 9539586 9540208 -217984370 + L1ME1 LINE L1 5599 6177 -1 1682 46 0 41 chr3 9541079 9541323 -217983255 - AluY SINE Alu 0 311 87 284 237 40 26 chr3 9541476 9541552 -217983026 + L2 LINE L2 3179 3255 -17 328 253 61 0 chr3 9542066 9542165 -217982413 + MIR SINE MIR 158 262 0 189 294 199 41 chr3 9542430 9542576 -217982002 - MIR3 SINE MIR -10 198 30 1412 219 68 21 chr3 9542619 9543002 -217981576 - MLT1C LTR MaLR -2 465 65 26 50 0 0 chr3 9543052 9543092 -217981486 + AT_rich Low_complexity Low_complexity 1 40 0 484 252 18 0 chr3 9543401 9543512 -217981066 - MER81 DNA DNA -1 113 1 277 303 50 82 chr3 9543881 9544071 -217980507 - MER5B DNA MER1_type -5 173 1 221 100 50 0 chr3 9544213 9544253 -217980325 + (CATA)n Simple_repeat Simple_repeat 2 43 0 556 280 42 26 chr3 9545597 9545790 -217978788 - MIR SINE MIR -8 254 59 22 0 0 0 chr3 9546389 9546411 -217978167 + AT_rich Low_complexity Low_complexity 1 22 0 273 152 0 0 chr3 9546952 9546998 -217977580 + MADE1 DNA Mariner 1 46 -34 690 266 138 9 chr3 9547017 9547235 -217977343 + MIR SINE MIR 17 262 0 237 224 12 106 chr3 9548419 9548504 -217976074 - MIR SINE MIR -97 165 89 21 0 0 0 chr3 9548548 9548569 -217976009 + AT_rich Low_complexity Low_complexity 1 21 0 814 218 63 11 chr3 9548599 9548773 -217975805 + MER5A DNA MER1_type 7 189 0 21 0 0 0 chr3 9549040 9549061 -217975517 + AT_rich Low_complexity Low_complexity 1 21 0 183 340 0 0 chr3 9549660 9549707 -217974871 + L2 LINE L2 3223 3269 -3 2214 105 0 3 chr3 9550001 9550295 -217974283 - AluY SINE Alu -18 293 1 332 283 22 0 chr3 9550375 9550467 -217974111 + MER5A DNA MER1_type 13 106 -83 1978 140 13 3 chr3 9550493 9550793 -217973785 + AluJb SINE Alu 1 303 -9 1213 244 53 28 chr3 9550911 9551345 -217973233 - L1ME1 LINE L1 -96 6070 5626 2627 204 51 45 chr3 9551352 9552111 -217972467 + MER21B LTR ERV1 1 857 -6 2864 250 72 35 chr3 9552170 9553312 -217971266 - L1MEc LINE L1 -5176 1220 37 255 293 27 0 chr3 9553454 9553529 -217971049 - L3 LINE CR1 -681 896 820 646 176 9 0 chr3 9553561 9553669 -217970909 - FLAM_A SINE Alu -32 110 2 472 313 178 29 chr3 9553671 9554019 -217970559 - L3 LINE CR1 -747 830 431 3233 210 35 26 chr3 9555130 9555964 -217968614 - L1MA9 LINE L1 -208 6104 5264 648 230 51 55 chr3 9556777 9556994 -217967584 + MER58A DNA MER1_type 1 216 -8 418 347 7 0 chr3 9557125 9557272 -217967306 - MIR3 SINE MIR -40 168 21 21 36 0 0 chr3 9557987 9558015 -217966563 + AT_rich Low_complexity Low_complexity 1 28 0 1340 139 139 46 chr3 9558285 9558608 -217965970 - L1MA8 LINE L1 -1 6290 5938 190 231 0 0 chr3 9558803 9558842 -217965736 - L2 LINE L2 -5 3308 3270 1957 158 49 6 chr3 9558906 9559255 -217965323 - THE1B LTR MaLR 0 364 1 194 264 14 111 chr3 9559443 9559587 -217964991 - L2 LINE L2 -287 3026 2897 278 306 75 50 chr3 9559644 9559804 -217964774 - L2 LINE L2 -527 2787 2624 212 300 125 17 chr3 9560046 9560174 -217964404 - MIR SINE MIR -63 145 11 29 70 0 0 chr3 9560702 9560759 -217963819 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr3 9561631 9561663 -217962915 + AT_rich Low_complexity Low_complexity 1 32 0 2536 239 85 27 chr3 9562086 9563853 -217960725 - L1ME1 LINE L1 -4 6231 4367 286 169 68 40 chr3 9563943 9564091 -217960487 + (ATATG)n Simple_repeat Simple_repeat 3 154 0 608 234 92 35 chr3 9564114 9564396 -217960182 - L1ME1 LINE L1 -1968 4247 3950 293 80 0 20 chr3 9564405 9564455 -217960123 + (TC)n Simple_repeat Simple_repeat 2 50 0 400 307 28 39 chr3 9564488 9564667 -217959911 - L1ME1 LINE L1 -6040 356 180 276 30 0 0 chr3 9565147 9565170 -217959408 + (TG)n Simple_repeat Simple_repeat 1 56 0 276 30 0 0 chr3 9565170 9565203 -217959375 + (TG)n Simple_repeat Simple_repeat 2 34 0 1786 175 0 0 chr3 9565228 9565513 -217959065 - AluSx SINE Alu -27 285 1 4562 62 10 0 chr3 9568275 9568860 -217955718 - LTR10C LTR ERV1 0 591 1 1674 209 11 15 chr3 9569283 9569658 -217954920 + MLT1A1 LTR MaLR 3 359 -6 382 320 128 45 chr3 9570032 9570369 -217954209 + MLT1J2 LTR MaLR 80 444 -6 573 244 124 10 chr3 9570989 9571190 -217953388 - MIR SINE MIR -2 260 37 300 308 75 38 chr3 9571423 9571582 -217952996 - MIR SINE MIR -51 211 47 752 134 0 47 chr3 9571654 9571781 -217952797 + HERVK LTR ERVK 5384 5504 -1739 310 109 36 18 chr3 9571771 9571826 -217952752 + Harlequin LTR ERV1 557 612 -6284 * 21 0 0 0 chr3 9573165 9573186 -217951392 + AT_rich Low_complexity Low_complexity 1 21 0 475 289 69 23 chr3 9573564 9573737 -217950841 - MLT1J1 LTR MaLR -2 444 264 230 28 0 56 chr3 9573750 9573786 -217950792 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 2007 143 19 19 chr3 9573793 9574156 -217950422 - L1PB1 LINE L1 -8 6143 5781 310 308 0 11 chr3 9574160 9574251 -217950327 - L1MC4 LINE L1 -1339 6703 6614 4165 158 8 1 chr3 9574252 9575513 -217949065 - L1P5 LINE L1 -360 5791 4523 7741 207 12 6 chr3 9575513 9577242 -217947336 + L1P5 LINE L1 2777 4514 -1632 644 348 43 3 chr3 9577242 9577524 -217947054 - MLT1J1 LTR MaLR -153 293 1 351 335 48 44 chr3 9578467 9578715 -217945863 - MLT1K LTR MaLR -14 574 326 26 30 0 0 chr3 9578745 9578778 -217945800 + AT_rich Low_complexity Low_complexity 1 33 0 1293 269 81 9 chr3 9578790 9579225 -217945353 - LTR33 LTR ERVL -19 502 37 183 366 0 14 chr3 9579767 9579838 -217944740 + L2 LINE L2 3201 3270 -2 22 35 0 0 chr3 9581461 9581490 -217943088 + AT_rich Low_complexity Low_complexity 1 29 0 1731 156 3 26 chr3 9582092 9582399 -217942179 + AluJb SINE Alu 1 300 -12 23 33 0 0 chr3 9583767 9583797 -217940781 + AT_rich Low_complexity Low_complexity 1 30 0 400 287 147 7 chr3 9583832 9583982 -217940596 - MIR SINE MIR -44 218 48 838 246 88 24 chr3 9584136 9584433 -217940145 + MER5C DNA MER1_type 7 322 -2 441 0 0 0 chr3 9585189 9585238 -217939340 + (TG)n Simple_repeat Simple_repeat 2 50 0 2075 98 18 0 chr3 9585241 9585518 -217939060 - AluSx SINE Alu -30 282 1 219 211 19 0 chr3 9585751 9585803 -217938775 - L2 LINE L2 -15 3257 3205 316 226 29 78 chr3 9585921 9585960 -217938618 - Charlie7 DNA MER1_type -2515 97 58 1695 154 49 35 chr3 9585960 9586330 -217938248 + THE1C LTR MaLR 1 375 0 316 226 29 78 chr3 9586330 9586392 -217938186 - Charlie7 DNA MER1_type -2554 58 1 6953 56 11 0 chr3 9586448 9587427 -217937151 + L1PA7 LINE L1 5166 6154 0 726 179 12 49 chr3 9587608 9587770 -217936808 - MER58B DNA MER1_type 0 341 186 390 286 191 0 chr3 9587933 9588080 -217936498 + MER5A DNA MER1_type 13 187 -2 189 308 103 0 chr3 9588966 9589044 -217935534 + MIR SINE MIR 98 183 -79 23 0 0 0 chr3 9589207 9589230 -217935348 + AT_rich Low_complexity Low_complexity 1 23 0 246 289 0 0 chr3 9589555 9589607 -217934971 + L2 LINE L2 3209 3260 -12 188 424 11 5 chr3 9590053 9590237 -217934341 + L2 LINE L2 2177 2361 -953 307 268 22 94 chr3 9590291 9590429 -217934149 - L1MC4 LINE L1 -1307 6735 6608 196 368 40 0 chr3 9590524 9590600 -217933978 + L2 LINE L2 3235 3313 0 13829 143 36 16 chr3 9590830 9593198 -217931380 + Tigger1 DNA MER2_type 1 2417 -1 694 321 178 33 chr3 9593300 9593945 -217930633 - L2 LINE L2 -1 3312 2575 536 244 179 26 chr3 9593948 9594104 -217930474 + MER5A DNA MER1_type 7 186 -3 696 315 68 0 chr3 9594127 9594406 -217930172 - L2 LINE L2 -747 2567 2270 21 36 0 0 chr3 9596010 9596038 -217928540 + AT_rich Low_complexity Low_complexity 1 28 0 207 256 61 37 chr3 9597454 9597536 -217927042 + MIR SINE MIR 120 203 -59 326 282 107 10 chr3 9597654 9597757 -217926821 + MIR SINE MIR 37 149 -113 26 52 0 17 chr3 9599517 9599549 -217925029 + AT_rich Low_complexity Low_complexity 1 33 -24 2074 126 0 0 chr3 9599549 9599835 -217924743 - AluSx SINE Alu -26 286 1 26 52 0 17 chr3 9599835 9599860 -217924718 + AT_rich Low_complexity Low_complexity 33 57 0 192 77 0 0 chr3 9600904 9600930 -217923648 + (A)n Simple_repeat Simple_repeat 1 26 0 194 0 39 0 chr3 9601684 9601710 -217922868 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 866 173 0 0 chr3 9601715 9601854 -217922724 - AluY SINE Alu -26 285 147 292 309 49 16 chr3 9602038 9602161 -217922417 + MIR SINE MIR 17 143 -119 1531 169 81 0 chr3 9602496 9602757 -217921821 + AluJo SINE Alu 3 284 -28 186 143 0 0 chr3 9602761 9602796 -217921782 + (CAA)n Simple_repeat Simple_repeat 2 36 0 231 228 35 0 chr3 9602904 9602961 -217921617 - MIR SINE MIR -66 142 84 201 39 0 0 chr3 9603012 9603038 -217921540 + (TG)n Simple_repeat Simple_repeat 1 26 0 2240 110 3 0 chr3 9603090 9603399 -217921179 + AluSg SINE Alu 1 310 0 599 287 74 10 chr3 9603721 9603923 -217920655 - L2 LINE L2 -1 3312 3098 193 381 31 21 chr3 9604150 9604247 -217920331 - MIR SINE MIR -90 118 21 646 324 42 0 chr3 9604339 9604552 -217920026 + MIR SINE MIR 28 249 -13 1664 279 107 34 chr3 9605888 9606562 -217918016 - MER21B LTR ERV1 -124 739 17 194 350 43 14 chr3 9607405 9607545 -217917033 + L2 LINE L2 1876 2019 -1295 579 195 47 0 chr3 9608876 9609178 -217915400 + (TA)n Simple_repeat Simple_repeat 1 316 0 515 235 24 0 chr3 9609191 9609357 -217915221 + (TATATG)n Simple_repeat Simple_repeat 5 174 0 391 266 29 0 chr3 9609413 9609586 -217914992 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 * 479 129 51 39 chr3 9609574 9609752 -217914826 + (TA)n Simple_repeat Simple_repeat 1 180 0 2627 229 61 20 chr3 9610325 9611034 -217913544 - L1ME2 LINE L1 -8 6090 5353 421 257 132 21 chr3 9611055 9611363 -217913215 - L1ME2 LINE L1 -3773 2325 2001 209 184 0 13 chr3 9611468 9611544 -217913034 + (TA)n Simple_repeat Simple_repeat 2 76 0 1207 278 78 76 chr3 9611547 9612946 -217911632 - L1ME2 LINE L1 -4319 1942 494 913 99 13 13 chr3 9613413 9613565 -217911013 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 878 198 0 64 chr3 9613679 9613881 -217910697 + MLT1A2 LTR MaLR 21 209 -165 189 74 0 0 chr3 9613916 9613943 -217910635 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 497 275 39 11 chr3 9613953 9614131 -217910447 + MLT1B LTR MaLR 192 374 0 400 325 27 32 chr3 9614418 9614606 -217909972 - MIR SINE MIR -75 187 1 23 33 0 0 chr3 9615574 9615604 -217908974 + AT_rich Low_complexity Low_complexity 1 30 0 415 38 0 0 chr3 9615964 9616017 -217908561 - L1PA6 LINE L1 0 6154 6102 371 287 8 54 chr3 9616822 9616951 -217907627 - L2 LINE L2 -1 3271 3149 210 261 0 0 chr3 9616971 9617017 -217907561 + L2 LINE L2 3264 3309 -4 235 307 53 18 chr3 9617430 9617544 -217907034 - L2 LINE L2 -1307 2007 1890 1937 132 22 0 chr3 9620011 9620284 -217904294 + AluSx SINE Alu 1 279 -33 231 36 0 0 chr3 9620284 9620312 -217904266 + (CA)n Simple_repeat Simple_repeat 1 28 0 358 265 29 37 chr3 9621449 9621585 -217902993 + MLT1K LTR MaLR 446 580 -8 381 269 11 0 chr3 9622752 9622845 -217901733 + MSTA LTR MaLR 335 428 0 9057 156 6 35 chr3 9622847 9624473 -217900105 + MSTA-int LTR MaLR 3 1580 0 1737 173 93 18 chr3 9624473 9624871 -217899707 + MSTA LTR MaLR 1 428 0 339 356 96 36 chr3 9625379 9625933 -217898645 - L2 LINE L2 -910 2404 1818 388 242 40 32 chr3 9626433 9626557 -217898021 - MIR SINE MIR -44 218 94 584 233 95 98 chr3 9627678 9628099 -217896479 + L1ME1 LINE L1 5729 6163 -1 2023 130 0 0 chr3 9628106 9628411 -217896167 + AluSx SINE Alu 1 305 0 1746 224 38 33 chr3 9628608 9629001 -217895577 - MLT1E LTR MaLR 0 593 199 214 181 0 24 chr3 9629025 9629108 -217895470 + (TA)n Simple_repeat Simple_repeat 2 82 0 475 244 1 22 chr3 9629108 9629218 -217895360 - MLT1E LTR MaLR -404 163 58 21 36 0 0 chr3 9629429 9629457 -217895121 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 9630052 9630640 -217893938 + L1MCb LINE L1 13 582 -5463 1737 186 0 7 chr3 9631247 9631542 -217893036 - AluJo SINE Alu -17 295 3 353 295 38 0 chr3 9632695 9632800 -217891778 - MIR SINE MIR -104 158 50 315 274 49 74 chr3 9634126 9634408 -217890170 + L1ME4a LINE L1 5634 5922 -199 1902 156 10 0 chr3 9634408 9634697 -217889881 + AluJb SINE Alu 9 300 -12 315 274 49 74 chr3 9634697 9634739 -217889839 + L1ME4a LINE L1 5922 5964 -157 3060 169 87 29 chr3 9634739 9635426 -217889152 - LTR8A LTR ERV1 0 727 1 315 274 49 74 chr3 9635426 9635530 -217889048 + L1ME4a LINE L1 5964 6052 -69 17935 181 11 12 chr3 9636327 9641481 -217883097 - L1PA4 LINE L1 -151 6655 1489 269 272 12 0 chr3 9641479 9641560 -217883018 - L1PA4 LINE L1 -5217 1570 1489 * 269 272 12 0 chr3 9641558 9641639 -217882939 - L1PA4 LINE L1 -5217 1570 1489 269 272 12 0 chr3 9641637 9641718 -217882860 - L1PA4 LINE L1 -5217 1570 1489 * 293 259 12 0 chr3 9641716 9641797 -217882781 - L1PA4 LINE L1 -5217 1570 1489 * 731 289 7 49 chr3 9641795 9642099 -217882479 - L1PA4 LINE L1 -5217 1570 1280 27 0 0 0 chr3 9642978 9643005 -217881573 + AT_rich Low_complexity Low_complexity 1 27 0 419 242 74 0 chr3 9643489 9643584 -217880994 + MLT1H LTR MaLR 133 234 -315 566 261 48 52 chr3 9645379 9645628 -217878950 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9645999 9646020 -217878558 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9646169 9646232 -217878346 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9647167 9647197 -217877381 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 167 8 8 chr3 9647945 9648077 -217876501 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr3 9648587 9648608 -217875970 + AT_rich Low_complexity Low_complexity 1 21 0 540 248 61 41 chr3 9648752 9649118 -217875460 + LTR48B LTR ERV1 1 608 -179 2169 192 69 16 chr3 9649118 9649712 -217874866 - MER39 LTR ERV1 0 707 1 267 146 107 117 chr3 9649712 9649799 -217874779 + LTR49 LTR ERV1 420 505 -90 236 213 0 98 chr3 9649799 9649860 -217874718 + Tigger5 DNA MER2_type 1 55 -2268 339 217 0 0 chr3 9649881 9649941 -217874637 + Tigger5 DNA MER2_type 2264 2323 0 300 283 40 0 chr3 9649941 9650035 -217874543 + MER34 LTR ERV1 445 542 0 844 114 16 0 chr3 9650585 9650708 -217873870 - AluSp/q SINE Alu -12 301 177 496 374 11 26 chr3 9650820 9650936 -217873642 + L3 LINE CR1 844 960 -617 845 228 105 40 chr3 9650936 9651335 -217873243 - LTR37A LTR ERV1 0 426 2 496 374 11 26 chr3 9651335 9651483 -217873095 + L3 LINE CR1 960 1104 -473 398 322 94 55 chr3 9651513 9651945 -217872633 + L2 LINE L2 2363 2816 -498 225 0 0 0 chr3 9651945 9651970 -217872608 + (TCTCTG)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 9651970 9652006 -217872572 + L2 LINE L2 2816 2849 -465 25 0 0 0 chr3 9652243 9652268 -217872310 + AT_rich Low_complexity Low_complexity 1 25 0 1368 134 44 19 chr3 9652848 9653283 -217871295 - LTR54 LTR ERV1 -2 508 2 267 336 69 8 chr3 9654078 9654209 -217870369 + MIR SINE MIR 124 262 0 291 317 63 0 chr3 9654271 9654413 -217870165 - MIR SINE MIR -57 205 55 625 179 172 13 chr3 9654506 9654657 -217869921 - FRAM SINE Alu 0 176 2 722 304 25 21 chr3 9655214 9655451 -217869127 + LTR33 LTR ERVL 45 282 -239 300 258 281 6 chr3 9655726 9655904 -217868674 - MIR SINE MIR -2 260 34 802 209 70 0 chr3 9655935 9656107 -217868471 - MER5A DNA MER1_type -2 187 4 441 287 54 0 chr3 9657764 9657893 -217866685 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9658742 9658822 -217865756 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 338 188 6 chr3 9660164 9660324 -217864254 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9660333 9660373 -217864205 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9660839 9660962 -217863616 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9661080 9661210 -217863368 - LTR67 LTR ERVL -316 241 110 33437 38 4 0 chr3 9661210 9665912 -217858666 + L1PA3 LINE L1 1239 5953 -202 181 275 120 93 chr3 9666528 9666786 -217857792 - L2 LINE L2 -54 3259 2995 367 218 0 32 chr3 9666802 9666926 -217857652 + GA-rich Low_complexity Low_complexity 1 120 0 2095 105 3 3 chr3 9667659 9667944 -217856634 - AluSc SINE Alu -22 287 3 2429 154 2 28 chr3 9669889 9670312 -217854266 + MSTB1 LTR MaLR 1 412 -20 210 303 13 13 chr3 9670391 9670467 -217854111 - L2 LINE L2 -9 3263 3188 2172 120 0 0 chr3 9670522 9670822 -217853756 + AluY SINE Alu 1 300 -11 727 289 143 35 chr3 9670941 9671582 -217852996 + L2 LINE L2 2563 3281 -32 230 317 20 20 chr3 9671665 9671766 -217852812 + GA-rich Low_complexity Low_complexity 3 103 0 300 311 82 8 chr3 9671871 9671993 -217852585 - L2 LINE L2 -1 3271 3141 1450 138 6 99 chr3 9672425 9672759 -217851819 - L1MA10 LINE L1 -14 6320 6018 599 195 0 0 chr3 9672759 9672882 -217851696 + L1M3 LINE L1 5369 5491 -677 7855 67 22 4 chr3 9673302 9674418 -217850160 + L1P LINE L1 966 2102 -4044 390 222 56 93 chr3 9674423 9674585 -217849993 - MER31-int LTR ERV1 -216 4720 4565 714 130 19 0 chr3 9674601 9674709 -217849869 - MSTB1 LTR MaLR 0 432 323 22 0 0 0 chr3 9674821 9674843 -217849735 + AT_rich Low_complexity Low_complexity 1 22 0 185 358 76 52 chr3 9675432 9675762 -217848816 - L2 LINE L2 -571 2743 2406 335 172 0 31 chr3 9676043 9676107 -217848471 - L1ME3A LINE L1 -78 6092 6031 2229 116 0 0 chr3 9676432 9676726 -217847852 - AluY SINE Alu -17 294 1 404 251 52 76 chr3 9676730 9676941 -217847637 + HsTC2 DNA Tc2 13 218 -1680 759 257 60 0 chr3 9676944 9677162 -217847416 + HsTC2 DNA Tc2 500 730 -1168 707 179 26 13 chr3 9677470 9677621 -217846957 - L1MC1 LINE L1 0 6333 6181 629 198 0 0 chr3 9677625 9677736 -217846842 - AluJb SINE Alu -185 127 17 647 126 0 10 chr3 9677739 9677842 -217846736 - L1MC1 LINE L1 -152 6181 6080 279 179 30 15 chr3 9677880 9677947 -217846631 + HsTC2 DNA Tc2 1831 1898 0 196 266 92 92 chr3 9678138 9678247 -217846331 - MIR SINE MIR -152 110 2 330 355 82 14 chr3 9679209 9679429 -217845149 - MIR SINE MIR -25 237 3 233 136 114 0 chr3 9680588 9680632 -217843946 - MIR SINE MIR -107 155 107 308 335 55 6 chr3 9681860 9682024 -217842554 + MIR SINE MIR 20 191 -71 1667 183 3 17 chr3 9682306 9682596 -217841982 + AluJb SINE Alu 1 286 -26 240 301 36 36 chr3 9685236 9685319 -217839259 + L2 LINE L2 3189 3271 -1 498 61 0 0 chr3 9685515 9685581 -217838997 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 1759 184 58 18 chr3 9685971 9686352 -217838226 + MSTD LTR MaLR 1 396 0 31 0 0 0 chr3 9686671 9686702 -217837876 + AT_rich Low_complexity Low_complexity 1 31 0 2282 110 7 0 chr3 9687535 9687835 -217836743 + AluSx SINE Alu 1 302 -10 1056 125 0 0 chr3 9688537 9688681 -217835897 + AluSp SINE Alu 116 259 -54 2072 115 3 3 chr3 9689141 9689437 -217835141 - AluSx SINE Alu -16 296 1 405 250 10 0 chr3 9689468 9689568 -217835010 + FLAM_A SINE Alu 25 125 -17 29 78 0 0 chr3 9692257 9692321 -217832257 + AT_rich Low_complexity Low_complexity 1 64 0 2060 134 3 3 chr3 9692707 9693006 -217831572 - AluSx SINE Alu -13 299 1 687 244 68 94 chr3 9693686 9694068 -217830510 + MLT1J LTR MaLR 123 494 -17 310 293 107 27 chr3 9694183 9694333 -217830245 + MIR3 SINE MIR 27 188 -20 2063 134 0 7 chr3 9694464 9694770 -217829808 + AluSg SINE Alu 5 308 -2 246 81 0 0 chr3 9695130 9695167 -217829411 + (CA)n Simple_repeat Simple_repeat 1 37 0 2141 111 0 26 chr3 9695674 9695981 -217828597 - AluSc SINE Alu -8 301 3 596 208 84 45 chr3 9697570 9697748 -217826830 + MER20 DNA MER1_type 35 219 0 366 23 0 0 chr3 9698616 9698659 -217825919 + (CAT)n Simple_repeat Simple_repeat 2 44 0 284 373 63 6 chr3 9698814 9698972 -217825606 - MLT1K LTR MaLR -408 180 14 24 0 0 0 chr3 9699352 9699376 -217825202 + AT_rich Low_complexity Low_complexity 1 24 0 226 321 0 9 chr3 9699844 9699956 -217824622 + A-rich Low_complexity Low_complexity 5 115 0 22 80 0 0 chr3 9700009 9700059 -217824519 + AT_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr3 9700361 9700403 -217824175 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 9702884 9702905 -217821673 + AT_rich Low_complexity Low_complexity 1 21 0 235 158 13 26 chr3 9703402 9703478 -217821100 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 1519 185 42 1 chr3 9704081 9704537 -217820041 + L1M2 LINE L1 5057 5530 -743 505 305 84 18 chr3 9704775 9705001 -217819577 + MIR SINE MIR 5 245 -17 180 271 0 42 chr3 9705226 9705274 -217819304 + L3 LINE CR1 1517 1562 -15 271 309 75 23 chr3 9705562 9705911 -217818667 + L1ME LINE L1 4256 4622 -1524 303 271 78 78 chr3 9706347 9706513 -217818065 + L1ME LINE L1 5647 5812 -309 221 238 0 0 chr3 9706513 9706555 -217818023 + polypurine Low_complexity Low_complexity 1 42 0 28 0 0 0 chr3 9706570 9706598 -217817980 + AT_rich Low_complexity Low_complexity 1 28 0 1893 155 24 39 chr3 9706628 9707009 -217817569 - THE1C LTR MaLR 0 375 1 211 217 22 0 chr3 9708225 9708271 -217816307 + CT-rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr3 9708513 9708541 -217816037 + AT_rich Low_complexity Low_complexity 1 28 0 340 241 15 138 chr3 9708570 9708765 -217815813 + MIR SINE MIR 78 248 -14 234 369 37 42 chr3 9713970 9714184 -217810394 + MIR SINE MIR 19 231 -31 195 184 0 0 chr3 9714397 9714435 -217810143 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 9714434 9714463 -217810115 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1296 112 0 0 chr3 9715585 9715793 -217808785 + AluSg/x SINE Alu 114 321 0 317 322 119 0 chr3 9715899 9716017 -217808561 + L2 LINE L2 3181 3312 -1 183 324 103 15 chr3 9716457 9716525 -217808053 + L2 LINE L2 3149 3222 -50 252 347 85 17 chr3 9716663 9716839 -217807739 + L2 LINE L2 2659 2846 -468 414 320 42 82 chr3 9717197 9717650 -217806928 + LTR67 LTR ERVL 100 534 -23 271 291 94 43 chr3 9717763 9717880 -217806698 + L2 LINE L2 3142 3264 -8 215 288 38 83 chr3 9718244 9718376 -217806202 - L2 LINE L2 -220 3052 2927 26 0 0 0 chr3 9723114 9723140 -217801438 + AT_rich Low_complexity Low_complexity 1 26 0 193 260 52 65 chr3 9723973 9724050 -217800528 + MIR SINE MIR 12 87 -175 355 246 88 35 chr3 9725212 9725326 -217799252 + L2 LINE L2 3194 3313 0 273 376 29 29 chr3 9725792 9725962 -217798616 + MIR SINE MIR 92 261 -1 403 223 177 15 chr3 9726049 9726179 -217798399 - L2 LINE L2 -2 3311 3161 1235 299 164 22 chr3 9726255 9727040 -217797538 - L2 LINE L2 -720 2594 1698 2256 125 0 0 chr3 9727095 9727407 -217797171 - AluSx SINE Alu 0 312 1 741 300 182 17 chr3 9727794 9728151 -217796427 - L2 LINE L2 0 3313 2898 2236 108 0 7 chr3 9728424 9728729 -217795849 + AluSx SINE Alu 1 303 -9 205 286 29 0 chr3 9730930 9731000 -217793578 - MIR SINE MIR -185 77 6 2492 63 0 16 chr3 9732035 9732351 -217792227 + AluY SINE Alu 1 311 0 202 277 21 0 chr3 9732537 9732584 -217791994 + L2 LINE L2 3210 3257 -15 1559 226 46 6 chr3 9732642 9732992 -217791586 + MLT1A2 LTR MaLR 3 366 -8 251 290 35 48 chr3 9733630 9733775 -217790803 - ERVL LTR ERVL -671 5093 4951 925 243 0 0 chr3 9734277 9734466 -217790112 - MER5A DNA MER1_type 0 189 1 237 224 238 41 chr3 9734540 9734687 -217789891 - LTR67 LTR ERVL -7 550 375 184 339 90 51 chr3 9735165 9735342 -217789236 + L2 LINE L2 2794 2977 -337 1525 173 5 126 chr3 9735409 9735831 -217788747 - MLT1B LTR MaLR -18 372 2 262 190 70 10 chr3 9737248 9737348 -217787230 + (TA)n Simple_repeat Simple_repeat 2 107 0 594 265 97 22 chr3 9737350 9737535 -217787043 - MIR SINE MIR -55 207 9 600 334 64 53 chr3 9737575 9738312 -217786266 + L2 LINE L2 2489 3235 -78 289 234 81 36 chr3 9738840 9738951 -217785627 - MLT1J2 LTR MaLR 0 450 335 258 350 17 0 chr3 9739234 9739354 -217785224 + MIR SINE MIR 111 232 -30 24 0 0 0 chr3 9739668 9739692 -217784886 + AT_rich Low_complexity Low_complexity 1 24 0 2184 125 0 0 chr3 9739884 9740181 -217784397 - AluSx SINE Alu -11 301 5 1202 160 4 110 chr3 9740494 9740775 -217783803 + AluJo SINE Alu 44 294 -18 24 0 0 0 chr3 9742154 9742178 -217782400 + AT_rich Low_complexity Low_complexity 1 24 0 2001 118 0 78 chr3 9743081 9743402 -217781176 + AluSx SINE Alu 1 296 -16 292 273 65 0 chr3 9744174 9744313 -217780265 - MER103 DNA DNA -16 150 3 262 361 54 23 chr3 9744441 9744571 -217780007 - L3 LINE CR1 -1210 367 234 1722 157 11 18 chr3 9745886 9746193 -217778385 - AluJb SINE Alu 0 305 1 210 212 0 30 chr3 9747603 9747627 -217776951 + (TAA)n Simple_repeat Simple_repeat 1 24 -40 2168 102 7 0 chr3 9747627 9747912 -217776666 + AluSx SINE Alu 1 287 -25 210 212 0 30 chr3 9747912 9747953 -217776625 + (TAA)n Simple_repeat Simple_repeat 24 64 0 229 306 0 0 chr3 9748353 9748425 -217776153 + GA-rich Low_complexity Low_complexity 2 73 0 23 54 0 0 chr3 9748663 9748700 -217775878 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 9748718 9748756 -217775822 + AT_rich Low_complexity Low_complexity 1 38 0 377 291 90 45 chr3 9748860 9749083 -217775495 - L1ME4a LINE L1 -224 5897 5665 441 314 93 42 chr3 9749227 9749463 -217775115 - MIR SINE MIR -14 248 1 574 266 57 11 chr3 9749908 9750085 -217774493 + MER5A DNA MER1_type 2 186 -3 206 118 0 29 chr3 9750898 9750932 -217773646 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 883 158 0 62 chr3 9751220 9751397 -217773181 + FAM SINE Alu 1 166 -9 225 0 0 0 chr3 9751483 9751508 -217773070 + (CA)n Simple_repeat Simple_repeat 2 26 0 2505 150 26 42 chr3 9751712 9752206 -217772372 - MER66B LTR ERV1 0 486 1 389 281 130 16 chr3 9752658 9752850 -217771728 + MER58C DNA MER1_type 2 215 0 280 317 122 18 chr3 9752972 9753136 -217771442 - MLT1J2 LTR MaLR -70 380 200 248 264 0 8 chr3 9753414 9753535 -217771043 + (TA)n Simple_repeat Simple_repeat 2 121 0 444 276 121 40 chr3 9753583 9753782 -217770796 + MIR SINE MIR 34 248 -14 247 250 15 0 chr3 9754201 9754269 -217770309 + (CA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr3 9754275 9754295 -217770283 + (CATA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr3 9754977 9755006 -217769572 + AT_rich Low_complexity Low_complexity 1 29 0 183 250 0 0 chr3 9755264 9755308 -217769270 - L2 LINE L2 -1 3312 3269 1349 246 79 4 chr3 9755647 9756134 -217768444 + L1MD2 LINE L1 5586 6115 -51 28 0 0 0 chr3 9756152 9756180 -217768398 + AT_rich Low_complexity Low_complexity 1 28 0 227 350 0 41 chr3 9756482 9756579 -217767999 - MER5A DNA MER1_type -95 94 2 278 383 55 22 chr3 9756891 9757202 -217767376 + L2 LINE L2 1607 1927 -1387 206 176 20 0 chr3 9757940 9757991 -217766587 + CT-rich Low_complexity Low_complexity 1 52 0 249 354 49 21 chr3 9758529 9758673 -217765905 + MIR SINE MIR 86 233 -29 738 270 73 43 chr3 9758890 9759123 -217765455 + MIR SINE MIR 2 241 -21 185 329 13 51 chr3 9759266 9759345 -217765233 + L2 LINE L2 3231 3306 -7 348 123 18 0 chr3 9760182 9760239 -217764339 - MLT2D LTR ERVL 0 414 357 210 150 0 0 chr3 9760296 9760336 -217764242 + (CCTA)n Simple_repeat Simple_repeat 4 43 0 1511 248 17 8 chr3 9760340 9760699 -217763879 - MLT2D LTR ERVL -48 366 5 543 304 75 20 chr3 9760723 9760976 -217763602 + L2 LINE L2 2812 3078 -194 199 268 0 85 chr3 9761372 9761454 -217763124 - MER5A DNA MER1_type -87 102 28 871 230 171 12 chr3 9762506 9762755 -217761823 + L1ME3 LINE L1 5833 6125 -37 2150 144 14 3 chr3 9762755 9763117 -217761461 - MER47A DNA MER2_type 0 366 1 698 290 83 39 chr3 9763349 9763799 -217760779 + MLT1H1 LTR MaLR 80 555 0 791 184 119 0 chr3 9763860 9764028 -217760550 + MER20 DNA MER1_type 32 219 0 1532 198 87 37 chr3 9764166 9764601 -217759977 - MSTB2 LTR MaLR 0 457 1 366 322 164 0 chr3 9764687 9764839 -217759739 - MER5A DNA MER1_type 0 189 13 753 239 74 0 chr3 9764849 9765025 -217759553 - MER5A DNA MER1_type 0 189 1 2242 64 0 0 chr3 9765247 9765514 -217759064 - AluY SINE Alu -7 304 38 507 321 26 16 chr3 9765861 9766054 -217758524 - MIR SINE MIR -18 244 50 2105 127 0 0 chr3 9766596 9766913 -217757665 - AluSx SINE Alu 0 317 1 190 333 0 0 chr3 9767024 9767078 -217757500 + MER5A DNA MER1_type 86 139 -50 3971 147 15 48 chr3 9767207 9768004 -217756574 - L1MA4A LINE L1 -4 6299 5529 293 253 94 79 chr3 9769883 9770085 -217754493 - MARNA DNA Mariner -220 366 162 411 353 0 0 chr3 9771488 9771638 -217752940 - MER5B DNA MER1_type 0 178 29 249 108 0 0 chr3 9772454 9772491 -217752087 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 301 308 23 18 chr3 9772645 9772791 -217751787 + MIR3 SINE MIR 32 178 -30 * 306 302 0 12 chr3 9772758 9772844 -217751734 - L2 LINE L2 -4 3309 3225 263 317 16 41 chr3 9773184 9773221 -217751357 + L2 LINE L2 3194 3230 -83 1768 187 22 14 chr3 9773221 9773584 -217750994 - MER47A DNA MER2_type 0 366 1 263 317 16 41 chr3 9773584 9773669 -217750909 + L2 LINE L2 3230 3313 0 218 354 80 34 chr3 9775536 9775711 -217748867 - MER5A DNA MER1_type -6 183 1 317 93 19 0 chr3 9776618 9776672 -217747906 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 194 213 64 0 chr3 9777017 9777064 -217747514 - L2 LINE L2 -7 3306 3257 418 286 0 17 chr3 9777658 9777777 -217746801 - MIR3 SINE MIR -9 199 83 653 288 214 16 chr3 9777803 9778181 -217746397 - LTR16A LTR ERVL 0 457 5 390 230 56 56 chr3 9778601 9778727 -217745851 - L2 LINE L2 0 3313 3188 186 326 211 11 chr3 9778751 9778846 -217745732 + L2 LINE L2 3154 3267 -5 303 350 0 34 chr3 9779378 9779495 -217745083 - MER5A DNA MER1_type -15 174 62 203 375 83 0 chr3 9779538 9779634 -217744944 + MIR SINE MIR 34 137 -71 2281 64 0 3 chr3 9779665 9779979 -217744599 + AluY SINE Alu 1 313 0 21 57 0 0 chr3 9781800 9781835 -217742743 + AT_rich Low_complexity Low_complexity 1 35 0 62 26 0 0 chr3 9781965 9782041 -217742537 + AT_rich Low_complexity Low_complexity 1 76 0 225 185 31 0 chr3 9782067 9782132 -217742446 + L1MC4 LINE L1 6626 6692 -1350 29 28 0 0 chr3 9782710 9782746 -217741832 + AT_rich Low_complexity Low_complexity 1 36 0 321 127 0 0 chr3 9783144 9783199 -217741379 - L1PB3 LINE L1 -2 6152 6098 303 271 188 12 chr3 9783562 9783732 -217740846 - L1MC4a LINE L1 -1930 5878 5679 6010 192 35 16 chr3 9783789 9785088 -217739490 + L1MC3 LINE L1 6463 7785 0 1485 192 26 13 chr3 9785099 9785407 -217739171 + AluSx SINE Alu 1 312 0 407 306 100 11 chr3 9785453 9785724 -217738854 - L1MC4a LINE L1 -2236 5572 5278 204 305 7 28 chr3 9785868 9786009 -217738569 + T-rich Low_complexity Low_complexity 2 139 0 2244 112 0 7 chr3 9786087 9786391 -217738187 - AluSx SINE Alu -10 302 1 310 155 214 68 chr3 9786498 9786601 -217737977 + MLT1E2 LTR MaLR 1 118 -506 1663 230 10 38 chr3 9786601 9786992 -217737586 + MLT1E2 LTR MaLR 228 607 -19 2439 148 26 7 chr3 9788354 9788773 -217735805 - MSTA LTR MaLR -1 427 1 338 333 82 41 chr3 9789294 9789609 -217734969 - L1MC/D LINE L1 -1993 5815 5488 216 216 45 9 chr3 9789665 9789776 -217734802 + (TA)n Simple_repeat Simple_repeat 2 116 0 58 74 0 0 chr3 9789807 9789928 -217734650 + AT_rich Low_complexity Low_complexity 1 121 0 23 68 0 0 chr3 9790314 9790358 -217734220 + AT_rich Low_complexity Low_complexity 1 44 0 1684 257 138 4 chr3 9790430 9790951 -217733627 - MLT1E LTR MaLR -2 591 1 34 0 0 0 chr3 9791356 9791390 -217733188 + AT_rich Low_complexity Low_complexity 1 34 0 371 327 45 6 chr3 9791795 9791951 -217732627 + MIR SINE MIR 89 250 -12 272 331 49 22 chr3 9792067 9792251 -217732327 - MLT1K LTR MaLR 0 588 400 233 325 103 8 chr3 9792993 9793119 -217731459 + MIR SINE MIR 32 169 -93 631 274 68 0 chr3 9793563 9793753 -217730825 - MIR SINE MIR -13 249 47 306 0 0 0 chr3 9794011 9794045 -217730533 + (TA)n Simple_repeat Simple_repeat 2 35 0 2494 63 0 0 chr3 9794121 9794423 -217730155 - AluY SINE Alu -9 302 1 745 280 52 13 chr3 9795883 9796115 -217728463 - MIR SINE MIR -3 259 19 354 291 129 89 chr3 9796145 9796447 -217728131 - L2 LINE L2 -16 3256 2943 358 230 251 40 chr3 9796926 9797105 -217727473 - MIR SINE MIR -11 251 37 376 315 171 20 chr3 9798175 9798321 -217726257 - L3 LINE CR1 -98 1479 1312 414 302 86 14 chr3 9798598 9798820 -217725758 + MIR SINE MIR 11 248 -14 1630 205 19 35 chr3 9800175 9800546 -217724032 - MLT1A1 LTR MaLR 0 365 1 270 344 23 16 chr3 9800552 9800680 -217723898 - MIR SINE MIR -10 252 124 1102 251 111 60 chr3 9800680 9801201 -217723377 + MLT1H LTR MaLR 2 549 0 341 308 139 29 chr3 9801288 9801496 -217723082 - MIR SINE MIR -16 246 16 3991 62 318 0 chr3 9801711 9802337 -217722241 - LTR12 LTR ERV1 -1 825 1 582 333 155 16 chr3 9802473 9802906 -217721672 + L2 LINE L2 2817 3309 -4 621 204 23 11 chr3 9803014 9803190 -217721388 + CT-rich Low_complexity Low_complexity 3 180 0 212 123 0 68 chr3 9803190 9803263 -217721315 + (TTTTC)n Simple_repeat Simple_repeat 1 68 0 1569 199 6 28 chr3 9803266 9803583 -217720995 - AluJb SINE Alu 0 312 3 211 321 37 12 chr3 9803687 9803768 -217720810 + MIR SINE MIR 111 193 -69 724 189 101 0 chr3 9803787 9803956 -217720622 + MLT2B1 LTR ERVL 1 186 -334 216 0 0 0 chr3 9804405 9804429 -217720149 + (T)n Simple_repeat Simple_repeat 1 24 0 321 215 103 28 chr3 9804493 9804600 -217719978 - MER69A DNA AcHobo -19 158 44 187 81 135 27 chr3 9805017 9805054 -217719524 + MIR SINE MIR 211 251 -11 1807 179 52 0 chr3 9805054 9805379 -217719199 + MER7A DNA MER2_type 2 341 -5 25 0 0 0 chr3 9805744 9805769 -217718809 + AT_rich Low_complexity Low_complexity 1 25 0 211 286 0 0 chr3 9806656 9806712 -217717866 + MIR3 SINE MIR 126 181 -27 592 287 32 57 chr3 9807658 9807937 -217716641 - MLT1K LTR MaLR -176 412 141 3575 137 20 18 chr3 9807957 9808554 -217716024 - Tigger3(Golem) DNA MER2_type -1 3028 2431 415 267 64 56 chr3 9808968 9809361 -217715217 + L1ME2 LINE L1 672 1067 -5138 314 268 78 39 chr3 9809444 9809649 -217714929 + L1ME2 LINE L1 1061 1273 -4840 586 297 66 34 chr3 9809822 9810142 -217714436 + L1ME2 LINE L1 1576 1905 -4491 459 285 6 0 chr3 9810175 9810347 -217714231 + L1ME2 LINE L1 4447 4619 -1596 2318 254 78 40 chr3 9811000 9811574 -217713004 + L1ME2 LINE L1 4621 5172 -1061 1470 158 18 108 chr3 9811574 9811915 -217712663 + AluJo SINE Alu 1 310 -2 2318 254 78 40 chr3 9811915 9812898 -217711680 + L1ME2 LINE L1 5172 6233 0 611 252 103 13 chr3 9814195 9814429 -217710149 - MLT1J LTR MaLR -239 272 18 23 54 0 0 chr3 9814649 9814686 -217709892 + AT_rich Low_complexity Low_complexity 1 37 0 207 219 0 0 chr3 9814734 9814775 -217709803 + (TA)n Simple_repeat Simple_repeat 1 41 0 212 31 62 0 chr3 9814776 9814808 -217709770 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1873 131 0 0 chr3 9814844 9815103 -217709475 - AluSq SINE Alu -54 259 1 22 0 0 0 chr3 9815103 9815125 -217709453 + AT_rich Low_complexity Low_complexity 1 22 0 346 214 11 11 chr3 9816816 9816905 -217707673 + Charlie8 DNA MER1_type 42 130 -2287 192 77 0 0 chr3 9816905 9816931 -217707647 + (GCTTG)n Simple_repeat Simple_repeat 2 27 0 2067 127 0 22 chr3 9816953 9817269 -217707309 - AluSc SINE Alu 0 309 1 225 0 0 0 chr3 9817292 9817317 -217707261 + (A)n Simple_repeat Simple_repeat 1 25 0 754 283 8 53 chr3 9817570 9817631 -217706947 - MIR SINE MIR -22 240 178 2197 94 0 7 chr3 9817631 9817919 -217706659 + AluSq SINE Alu 20 305 -8 754 283 8 53 chr3 9817919 9818101 -217706477 - MIR SINE MIR -84 178 8 727 210 23 17 chr3 9818426 9818602 -217705976 + MER45A DNA AcHobo 1 177 -1 357 263 111 10 chr3 9818631 9818730 -217705848 + L2 LINE L2 3202 3310 -3 * 717 274 42 34 chr3 9818729 9818748 -217705830 + MIR SINE MIR 17 34 -228 747 237 32 27 chr3 9818748 9818967 -217705611 - MER58A DNA MER1_type -4 220 1 717 274 42 34 chr3 9818967 9819184 -217705394 + MIR SINE MIR 34 255 -7 264 180 80 0 chr3 9819453 9819503 -217705075 + MIR3 SINE MIR 106 159 -49 342 294 164 36 chr3 9820095 9820645 -217703933 + L2 LINE L2 2602 3313 0 315 71 0 0 chr3 9820897 9820939 -217703639 + (CA)n Simple_repeat Simple_repeat 1 42 0 280 370 106 68 chr3 9820981 9821303 -217703275 - L2 LINE L2 -19 3253 2920 213 278 43 52 chr3 9822277 9822392 -217702186 - MIR SINE MIR -69 193 80 408 323 107 15 chr3 9822721 9822984 -217701594 - Charlie8 DNA MER1_type -2130 287 1 204 191 24 0 chr3 9823487 9823529 -217701049 + MIR SINE MIR 105 147 -61 5577 122 28 0 chr3 9823567 9824683 -217699895 - L1PA13 LINE L1 -12 6151 5036 3638 238 125 23 chr3 9824683 9824953 -217699625 - L1P LINE L1 -2695 3451 3210 297 0 0 0 chr3 9824953 9824986 -217699592 + (TG)n Simple_repeat Simple_repeat 2 34 0 3638 238 125 23 chr3 9824986 9826168 -217698410 - L1P LINE L1 -2936 3210 1851 239 153 0 68 chr3 9826168 9826227 -217698351 + CT-rich Low_complexity Low_complexity 4 58 0 22 0 0 0 chr3 9827960 9827982 -217696596 + AT_rich Low_complexity Low_complexity 1 22 0 198 265 0 20 chr3 9828628 9828677 -217695901 + L3b LINE CR1 1535 1582 -1 246 347 153 6 chr3 9829916 9830092 -217694486 + MIR SINE MIR 28 229 -33 * 637 265 28 84 chr3 9830072 9830321 -217694257 + MIR SINE MIR 18 252 -10 465 213 32 0 chr3 9831338 9831432 -217693146 + MER5A DNA MER1_type 9 105 -84 1973 126 3 10 chr3 9831449 9831751 -217692827 + AluSx SINE Alu 1 300 -12 1540 236 79 34 chr3 9831871 9832312 -217692266 - MLT1D LTR MaLR -44 461 1 758 296 17 17 chr3 9832795 9833035 -217691543 + MIR SINE MIR 13 252 -10 189 0 0 0 chr3 9833051 9833072 -217691506 + (TTA)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr3 9833936 9833964 -217690614 + (TG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr3 9834291 9834318 -217690260 + AT_rich Low_complexity Low_complexity 1 27 0 298 175 0 0 chr3 9834440 9834503 -217690075 - MER97c DNA MER1_type? -37 1053 991 716 158 15 8 chr3 9834511 9834644 -217689934 - MER97a DNA MER1_type? -561 333 200 681 256 63 29 chr3 9834656 9834863 -217689715 + MER58A DNA MER1_type 10 223 -1 612 235 60 0 chr3 9834863 9835012 -217689566 - MER97b DNA MER1_type? -848 205 48 198 67 0 0 chr3 9839054 9839065 -217685513 + (TAAAAA)n Simple_repeat Simple_repeat 1 11 -19 5011 45 0 0 chr3 9839065 9839669 -217684909 + L1PA5 LINE L1 5549 6152 -2 198 67 0 0 chr3 9839669 9839687 -217684891 + (TAAAAA)n Simple_repeat Simple_repeat 10 30 0 278 276 0 51 chr3 9839703 9839801 -217684777 + L2 LINE L2 3221 3313 0 256 364 119 7 chr3 9839847 9839990 -217684588 + MIR3 SINE MIR 16 174 -34 233 330 43 0 chr3 9840493 9840587 -217683991 - MIR SINE MIR -91 117 20 585 0 0 0 chr3 9841140 9841205 -217683373 + (TC)n Simple_repeat Simple_repeat 1 65 0 2102 124 36 30 chr3 9841444 9841806 -217682772 + THE1B LTR MaLR 1 364 0 289 308 226 0 chr3 9842090 9842236 -217682342 + MIR SINE MIR 65 243 -19 235 286 65 13 chr3 9842280 9842357 -217682221 + MIR3 SINE MIR 110 190 -18 24 32 0 0 chr3 9842357 9842388 -217682190 + AT_rich Low_complexity Low_complexity 1 31 0 2236 92 0 13 chr3 9842399 9842702 -217681876 + AluSx SINE Alu 1 299 -13 520 252 58 22 chr3 9844354 9844493 -217680085 + MER5A DNA MER1_type 14 157 -32 3702 261 96 38 chr3 9844493 9845164 -217679414 - L1M LINE L1 -840 5306 4675 180 0 0 0 chr3 9845164 9845184 -217679394 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3702 261 96 38 chr3 9845184 9846482 -217678096 - L1M LINE L1 -1471 4675 3137 457 287 9 0 chr3 9846482 9846597 -217677981 - FLAM_A SINE Alu -17 116 1 3702 261 96 38 chr3 9846597 9847154 -217677424 - L1M LINE L1 -3009 3137 2614 229 237 17 17 chr3 9847159 9847218 -217677360 + MER5A DNA MER1_type 130 188 -1 465 271 52 42 chr3 9847611 9847803 -217676775 + MIR SINE MIR 68 261 -1 481 292 55 24 chr3 9849297 9849551 -217675027 - L1MC4a LINE L1 -321 5800 5670 332 301 134 29 chr3 9849584 9849875 -217674703 - L1ME LINE L1 -394 5727 5391 302 325 53 33 chr3 9850461 9850612 -217673966 + L2 LINE L2 3160 3313 0 237 94 57 57 chr3 9851677 9851730 -217672848 - L1ME4a LINE L1 -2 6119 6067 23 78 0 0 chr3 9852301 9852352 -217672226 + AT_rich Low_complexity Low_complexity 1 51 0 2511 75 0 0 chr3 9852582 9852890 -217671688 - AluY SINE Alu -3 308 1 290 274 102 47 chr3 9852895 9853110 -217671468 - HAL1 LINE L1 0 2507 2281 269 256 26 17 chr3 9853175 9853292 -217671286 - HAL1 LINE L1 -347 2160 2043 345 285 34 53 chr3 9853478 9853685 -217670893 - HAL1 LINE L1 -710 1797 1595 697 257 171 71 chr3 9853896 9854444 -217670134 - HAL1 LINE L1 -916 1591 989 274 309 141 28 chr3 9854535 9854784 -217669794 - HAL1 LINE L1 -1632 875 599 2532 27 0 0 chr3 9854997 9855294 -217669284 - L1HS LINE L1 0 6155 5859 250 256 158 0 chr3 9855692 9855774 -217668804 - L1ME LINE L1 -519 5602 5508 335 219 126 60 chr3 9855894 9856045 -217668533 - L1ME LINE L1 -767 5379 5219 2188 121 0 3 chr3 9861248 9861545 -217663033 - AluSx SINE Alu -16 296 1 253 241 0 17 chr3 9862309 9862367 -217662211 + MLT1J LTR MaLR 113 169 -342 2229 108 23 0 chr3 9862574 9862879 -217661699 - AluSx SINE Alu 0 312 1 585 288 100 39 chr3 9862879 9863149 -217661429 + MLT1L LTR MaLR 316 605 -10 287 298 12 0 chr3 9863160 9863244 -217661334 + L2 LINE L2 3185 3269 -3 198 0 0 0 chr3 9863566 9863588 -217660990 + (GA)n Simple_repeat Simple_repeat 1 22 0 248 251 96 107 chr3 9864072 9864259 -217660319 - L2 LINE L2 0 3313 3129 2858 268 66 40 chr3 9864259 9864742 -217659836 - L1M4 LINE L1 -5245 1297 828 229 25 0 50 chr3 9864742 9864782 -217659796 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2858 268 66 40 chr3 9864782 9865561 -217659017 - L1M4 LINE L1 -5714 828 2 2174 298 80 58 chr3 9865564 9866865 -217657713 - L2 LINE L2 -175 3138 1824 242 340 35 42 chr3 9868902 9869046 -217655532 - L2 LINE L2 -237 3035 2893 632 245 57 38 chr3 9869490 9869780 -217654798 - L1ME3 LINE L1 -5 6165 5861 203 147 0 0 chr3 9869799 9869833 -217654745 + (TG)n Simple_repeat Simple_repeat 1 34 0 1477 212 36 34 chr3 9869837 9870223 -217654355 - MER39 LTR ERV1 -1 706 320 296 222 46 65 chr3 9870213 9870321 -217654257 - LTR48B LTR ERV1 -538 106 1 * 351 0 0 0 chr3 9870332 9870371 -217654207 + (TG)n Simple_repeat Simple_repeat 1 39 0 564 207 42 0 chr3 9870374 9870512 -217654066 - L1ME2 LINE L1 -279 5885 5739 200 308 64 0 chr3 9871887 9871965 -217652613 - MIR SINE MIR -98 164 82 2185 112 37 31 chr3 9872058 9872441 -217652137 - L1PB1 LINE L1 -5 6146 5762 564 284 73 32 chr3 9872575 9872904 -217651674 - LTR16A1 LTR ERVL 0 457 80 307 344 23 0 chr3 9873057 9873185 -217651393 - MERVL LTR ERVL -2634 2851 2721 287 256 49 77 chr3 9873228 9873398 -217651180 - MERVL LTR ERVL -2372 2624 2461 316 289 22 0 chr3 9873608 9873698 -217650880 - MERVL LTR ERVL -2639 2357 2266 844 283 129 37 chr3 9873699 9874102 -217650476 - MERVL LTR ERVL -2865 2131 1692 744 339 55 31 chr3 9874305 9874721 -217649857 - MERVL LTR ERVL -3835 1161 736 821 158 49 54 chr3 9875001 9875185 -217649393 - MER5A DNA MER1_type -6 183 1 419 248 20 10 chr3 9875185 9875286 -217649292 - LTR16A1 LTR ERVL -341 116 15 2047 109 49 0 chr3 9876217 9876501 -217648077 + AluSx SINE Alu 1 298 -14 362 294 112 18 chr3 9876560 9876730 -217647848 + L2 LINE L2 3112 3297 -16 191 170 21 0 chr3 9877013 9877060 -217647518 + GA-rich Low_complexity Low_complexity 4 51 0 230 349 63 32 chr3 9877347 9877473 -217647105 + MER5A DNA MER1_type 51 180 -9 406 353 47 26 chr3 9877495 9877727 -217646851 - MIR SINE MIR -6 256 20 21 36 0 0 chr3 9879264 9879292 -217645286 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 8 42 chr3 9879373 9879493 -217645085 + (TATG)n Simple_repeat Simple_repeat 3 118 0 320 319 7 0 chr3 9879493 9879634 -217644944 - MER113 DNA MER1_type? -378 143 2 738 327 57 71 chr3 9879941 9880103 -217644475 + L2 LINE L2 2729 2892 -421 1984 145 42 31 chr3 9880103 9880462 -217644116 + THE1B LTR MaLR 1 363 -1 738 327 57 71 chr3 9880462 9880874 -217643704 + L2 LINE L2 2892 3313 0 215 376 0 0 chr3 9881613 9881714 -217642864 - L2 LINE L2 -706 2608 2508 1255 128 0 5 chr3 9882250 9882445 -217642133 + L1PB1 LINE L1 1 194 -6669 13014 163 69 6 chr3 9882447 9887710 -217636868 + L1PB1 LINE L1 905 6507 -360 252 0 0 0 chr3 9887776 9887804 -217636774 + (CA)n Simple_repeat Simple_repeat 2 29 0 2366 126 6 0 chr3 9887805 9888161 -217636417 + L1PB1 LINE L1 6508 6865 -2 22 0 0 0 chr3 9888161 9888183 -217636395 + AT_rich Low_complexity Low_complexity 1 22 0 2017 161 41 19 chr3 9889901 9890268 -217634310 - THE1C LTR MaLR 0 375 1 327 268 263 24 chr3 9891364 9891569 -217633009 - MIR SINE MIR -3 259 6 363 298 0 0 chr3 9892050 9892144 -217632434 - MER117 DNA MER1_type -35 162 69 700 273 11 32 chr3 9892245 9892432 -217632146 - MER5A DNA MER1_type -6 183 1 643 290 40 24 chr3 9892444 9892696 -217631882 + MIR SINE MIR 7 262 0 1817 146 69 0 chr3 9892886 9893174 -217631404 - AluJo SINE Alu -4 308 1 2821 112 17 0 chr3 9893751 9894170 -217630408 - L1PA13 LINE L1 0 6163 5738 21 36 0 0 chr3 9894170 9894198 -217630380 + AT_rich Low_complexity Low_complexity 1 28 0 2574 150 31 10 chr3 9894239 9894726 -217629852 + L1MA5 LINE L1 5802 6298 -2 1995 126 0 29 chr3 9894934 9895243 -217629335 - AluSx SINE Alu -12 300 1 311 276 181 29 chr3 9897564 9897774 -217626804 - MIR SINE MIR -5 257 16 303 273 201 19 chr3 9898156 9898310 -217626268 - MLT1J2 LTR MaLR -4 446 265 915 217 0 48 chr3 9898310 9898499 -217626079 + MER5A DNA MER1_type 9 188 -1 2499 111 67 7 chr3 9899895 9900299 -217624279 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr3 9900998 9901022 -217623556 + (A)n Simple_repeat Simple_repeat 1 24 0 1711 179 43 156 chr3 9901118 9901699 -217622879 + MLT2B3 LTR ERVL 1 509 -45 500 0 17 0 chr3 9901699 9901759 -217622819 + (CA)n Simple_repeat Simple_repeat 1 61 0 1711 179 43 156 chr3 9901759 9901799 -217622779 + MLT2B3 LTR ERVL 509 552 -2 2917 247 26 1 chr3 9901799 9902488 -217622090 + HERVL-B3 LTR ERVL 64 769 -4885 1205 248 8 0 chr3 9902488 9902734 -217621844 - ERVL LTR ERVL -5116 648 401 18710 174 20 14 chr3 9902736 9905956 -217618622 + HERVL-B3 LTR ERVL 811 4054 -1710 1993 154 0 3 chr3 9905956 9906261 -217618317 - AluJb SINE Alu -8 304 1 18710 174 20 14 chr3 9906261 9906349 -217618229 + HERVL-B3 LTR ERVL 4054 4140 -1624 695 232 0 96 chr3 9906363 9906573 -217618005 + MLT2B3 LTR ERVL 282 359 -94 396 0 0 0 chr3 9906579 9906623 -217617955 + (CA)n Simple_repeat Simple_repeat 1 44 0 31 58 0 0 chr3 9906651 9906703 -217617875 + AT_rich Low_complexity Low_complexity 1 52 0 259 167 0 0 chr3 9906713 9906761 -217617817 + MLT2B3 LTR ERVL 473 520 0 487 293 94 69 chr3 9907119 9907525 -217617053 + Charlie8 DNA MER1_type 3 418 -1999 262 204 0 0 chr3 9907603 9907657 -217616921 + Charlie8 DNA MER1_type 1360 1413 -1004 450 268 58 0 chr3 9908153 9908291 -217616287 - MER103 DNA DNA -4 162 17 2002 136 23 3 chr3 9908497 9908798 -217615780 + AluSx SINE Alu 4 310 -2 348 43 0 0 chr3 9908868 9908914 -217615664 + (TG)n Simple_repeat Simple_repeat 2 47 0 2141 102 7 16 chr3 9908992 9909295 -217615283 - AluSx SINE Alu -10 302 3 200 292 0 0 chr3 9909401 9909449 -217615129 + L2 LINE L2 3217 3264 -8 324 0 0 0 chr3 9909796 9909832 -217614746 + (TG)n Simple_repeat Simple_repeat 1 36 0 208 171 0 24 chr3 9910497 9910538 -217614040 + CT-rich Low_complexity Low_complexity 3 42 0 302 191 75 21 chr3 9911288 9911382 -217613196 - LTR67 LTR ERVL 0 557 459 180 0 0 0 chr3 9912000 9912020 -217612558 + (CA)n Simple_repeat Simple_repeat 2 21 0 1535 175 45 31 chr3 9912504 9912796 -217611782 + AluJo SINE Alu 1 296 -16 40 49 0 0 chr3 9912796 9912857 -217611721 + AT_rich Low_complexity Low_complexity 1 61 0 255 289 164 38 chr3 9913258 9913521 -217611057 - L1ME LINE L1 -451 5713 5418 23 68 0 0 chr3 9914155 9914199 -217610379 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 117 61 chr3 9914514 9914904 -217609674 - L1MEc LINE L1 -745 1745 1326 286 276 109 38 chr3 9914959 9915169 -217609409 - L1MEc LINE L1 -4930 1189 965 261 243 0 0 chr3 9915306 9915376 -217609202 + (TA)n Simple_repeat Simple_repeat 1 70 0 306 389 25 33 chr3 9915440 9915684 -217608894 - L1MEc LINE L1 -5389 730 489 344 307 62 64 chr3 9915746 9916104 -217608474 - L1MEc LINE L1 -5758 361 5 220 264 0 0 chr3 9917596 9917668 -217606910 + A-rich Low_complexity Low_complexity 1 72 0 277 366 0 11 chr3 9918451 9918544 -217606034 + L2 LINE L2 3173 3264 -8 1172 209 21 8 chr3 9918717 9918956 -217605622 - AluJo SINE Alu -14 298 57 587 303 34 0 chr3 9919102 9919277 -217605301 - MLT1J LTR MaLR -330 181 1 354 378 31 0 chr3 9919344 9919471 -217605107 + L2 LINE L2 3141 3271 -1 549 157 0 0 chr3 9920017 9920100 -217604478 + THE1B LTR MaLR 2 84 -280 994 141 59 29 chr3 9920104 9920274 -217604304 + THE1B LTR MaLR 190 364 0 285 241 157 19 chr3 9920879 9920987 -217603591 - MER5C DNA MER1_type -200 124 2 240 303 9 28 chr3 9921186 9921295 -217603283 - MIR SINE MIR -4 258 152 206 313 16 16 chr3 9921374 9921438 -217603140 - MIR SINE MIR -186 76 13 250 329 36 21 chr3 9921794 9921934 -217602644 - L2 LINE L2 -871 2443 2302 21 0 0 0 chr3 9923014 9923035 -217601543 + AT_rich Low_complexity Low_complexity 1 21 0 806 222 45 15 chr3 9923438 9923636 -217600942 + MER3 DNA MER1_type 6 209 0 194 349 85 21 chr3 9923696 9923885 -217600693 + MIR SINE MIR 57 257 -5 22 0 0 0 chr3 9923902 9923924 -217600654 + AT_rich Low_complexity Low_complexity 1 22 0 815 241 11 0 chr3 9923934 9924125 -217600453 - AluJo SINE Alu -107 205 13 2203 84 0 40 chr3 9924126 9924449 -217600129 - AluSq SINE Alu 0 311 1 198 304 29 0 chr3 9924510 9924579 -217599999 + MIR SINE MIR 83 153 -109 209 293 17 0 chr3 9924678 9924736 -217599842 + L2 LINE L2 2596 2654 -660 2258 102 0 7 chr3 9924873 9925176 -217599402 - AluSg SINE Alu -9 301 1 675 229 102 54 chr3 9926240 9926445 -217598133 + MER58A DNA MER1_type 10 224 0 902 189 14 78 chr3 9926453 9926670 -217597908 - MER20 DNA MER1_type -16 203 1 26 50 0 0 chr3 9928345 9928385 -217596193 + AT_rich Low_complexity Low_complexity 1 40 0 358 309 58 29 chr3 9928401 9928644 -217595934 - L1MC5 LINE L1 -83 7878 7629 1696 149 3 68 chr3 9928728 9929049 -217595529 - AluSx SINE Alu -10 302 3 23 33 0 0 chr3 9930844 9930874 -217593704 + AT_rich Low_complexity Low_complexity 1 30 0 260 329 21 35 chr3 9931007 9931150 -217593428 - L2 LINE L2 0 3313 3173 607 250 0 0 chr3 9931274 9931422 -217593156 + MIR SINE MIR 100 247 -15 241 366 46 15 chr3 9932161 9932292 -217592286 + L2 LINE L2 3133 3267 -5 1925 164 0 0 chr3 9933688 9933987 -217590591 - AluSx SINE Alu -13 299 1 1420 190 29 3 chr3 9934093 9934409 -217590169 - MER33 DNA MER1_type 0 324 1 25 0 0 0 chr3 9934862 9934887 -217589691 + AT_rich Low_complexity Low_complexity 1 25 0 2432 90 0 0 chr3 9934948 9935258 -217589320 - AluY SINE Alu -1 310 1 503 330 22 22 chr3 9935393 9935666 -217588912 + L1ME3A LINE L1 5659 5931 -239 189 0 0 0 chr3 9935723 9935744 -217588834 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9008 232 93 21 chr3 9935943 9940911 -217583667 - L1PA16 LINE L1 -20 6849 1438 3708 53 0 0 chr3 9940921 9941377 -217583201 + L1PA5 LINE L1 5696 6151 -3 1325 216 49 54 chr3 9941783 9942153 -217582425 - L1PA16 LINE L1 -6038 811 444 393 341 71 66 chr3 9942175 9942386 -217582192 - L1M2 LINE L1 -6064 785 574 1245 311 35 14 chr3 9942896 9943327 -217581251 - L1M2 LINE L1 -6399 450 11 221 327 120 33 chr3 9943412 9943562 -217581016 - L3 LINE CR1 -834 743 581 407 280 38 71 chr3 9943627 9943838 -217580740 - MIR SINE MIR -38 224 21 2283 114 0 0 chr3 9944416 9944714 -217579864 + AluSq SINE Alu 4 301 -12 1263 148 8 25 chr3 9945107 9945141 -217579437 + L1MA5A LINE L1 6049 6082 -215 2350 135 25 0 chr3 9945141 9945496 -217579082 + THE1B LTR MaLR 1 364 0 1263 148 8 25 chr3 9945496 9945704 -217578874 + L1MA5A LINE L1 6082 6287 -10 1419 188 35 22 chr3 9947046 9947365 -217577213 + L1MA3 LINE L1 5983 6305 0 847 190 66 28 chr3 9947381 9947592 -217576986 + MER20 DNA MER1_type 1 219 0 188 234 125 31 chr3 9947879 9947943 -217576635 - L2 LINE L2 -12 3301 3232 414 296 63 25 chr3 9948016 9948175 -217576403 + L3 LINE CR1 1286 1450 -127 189 107 0 0 chr3 9948283 9948311 -217576267 + (TA)n Simple_repeat Simple_repeat 1 28 0 567 222 31 43 chr3 9948337 9948499 -217576079 - MER45A DNA AcHobo -18 160 1 327 85 0 0 chr3 9948825 9948872 -217575706 + (TAA)n Simple_repeat Simple_repeat 2 48 0 515 254 122 24 chr3 9949071 9949190 -217575388 + MIR SINE MIR 22 128 -134 1984 160 41 55 chr3 9949190 9949628 -217574950 + MSTB1 LTR MaLR 1 432 0 515 254 122 24 chr3 9949628 9949713 -217574865 + MIR SINE MIR 128 246 -16 263 379 49 10 chr3 9949751 9949954 -217574624 + MIR SINE MIR 13 223 -39 457 312 83 0 chr3 9950435 9950592 -217573986 + MIR SINE MIR 32 201 -61 24 32 0 0 chr3 9952985 9953016 -217571562 + AT_rich Low_complexity Low_complexity 1 31 0 528 241 0 0 chr3 9953280 9953454 -217571124 + (TA)n Simple_repeat Simple_repeat 2 175 0 282 56 0 0 chr3 9953491 9953527 -217571051 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 506 345 24 0 chr3 9953642 9953810 -217570768 - MER5B DNA MER1_type -6 172 1 24 0 0 0 chr3 9954458 9954482 -217570096 + AT_rich Low_complexity Low_complexity 1 24 0 832 112 28 0 chr3 9955016 9955159 -217569419 - L1MA5A LINE L1 -3 6294 6148 24 32 0 0 chr3 9955624 9955655 -217568923 + AT_rich Low_complexity Low_complexity 1 31 0 2384 72 0 0 chr3 9955886 9956176 -217568402 + AluY SINE Alu 1 290 -21 367 264 72 52 chr3 9956180 9956373 -217568205 - L1MC5 LINE L1 -49 7912 7716 248 214 45 45 chr3 9956458 9956547 -217568031 - L1ME LINE L1 -462 5659 5571 258 283 0 16 chr3 9957432 9957513 -217567065 - MIR SINE MIR -121 87 8 791 297 68 0 chr3 9957604 9957840 -217566738 - MIR SINE MIR -5 257 6 309 274 35 138 chr3 9958694 9959012 -217565566 - L1ME LINE L1 -1310 4836 4552 2142 103 0 0 chr3 9959233 9959562 -217565016 - AluY SINE Alu 0 329 1 367 301 133 25 chr3 9959727 9959929 -217564649 - Charlie8 DNA MER1_type -2141 276 93 1871 156 3 7 chr3 9959951 9960246 -217564332 + AluJb SINE Alu 1 294 -18 459 81 35 0 chr3 9960261 9960347 -217564231 + (CA)n Simple_repeat Simple_repeat 2 90 0 1065 236 129 63 chr3 9960499 9960957 -217563621 - MLT1D LTR MaLR 0 505 18 306 231 91 8 chr3 9961226 9961347 -217563231 - L1ME3A LINE L1 -208 5962 5832 608 325 44 0 chr3 9961363 9961612 -217562966 - L1ME3A LINE L1 -415 5755 5496 216 222 32 16 chr3 9961614 9961677 -217562901 + CT-rich Low_complexity Low_complexity 3 66 0 256 48 48 0 chr3 9961682 9961724 -217562854 + (TC)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr3 9962648 9962671 -217561907 + (CA)n Simple_repeat Simple_repeat 2 24 0 194 337 40 0 chr3 9963669 9963770 -217560808 + MIR SINE MIR 108 212 -50 231 340 14 62 chr3 9963965 9964109 -217560469 - MIR SINE MIR -116 146 10 279 240 53 0 chr3 9964404 9964479 -217560099 + MIR SINE MIR 86 164 -98 497 250 15 38 chr3 9965367 9965499 -217559079 - L2 LINE L2 0 3272 3144 232 354 67 45 chr3 9965729 9965952 -217558626 - L2 LINE L2 -373 2941 2714 432 300 42 55 chr3 9968439 9968676 -217555902 + MIR SINE MIR 1 234 -28 1086 137 5 105 chr3 9971541 9971760 -217552818 + AluJo SINE Alu 89 285 -27 448 240 85 0 chr3 9971818 9971947 -217552631 - MER58B DNA MER1_type 0 341 202 318 206 16 0 chr3 9972024 9972087 -217552491 + MER3 DNA MER1_type 83 146 -63 256 218 0 0 chr3 9972077 9972132 -217552446 + MER3 DNA MER1_type 151 205 -4 * 22 35 0 0 chr3 9972393 9972422 -217552156 + AT_rich Low_complexity Low_complexity 1 29 0 530 272 23 40 chr3 9973689 9973862 -217550716 + MIR SINE MIR 33 202 -60 201 171 0 0 chr3 9973954 9973989 -217550589 + A-rich Low_complexity Low_complexity 1 35 0 322 302 88 44 chr3 9974318 9974523 -217550055 - L2 LINE L2 0 3313 3100 228 204 161 86 chr3 9974569 9974662 -217549916 - MIR SINE MIR -82 180 81 30 45 0 0 chr3 9975395 9975439 -217549139 + AT_rich Low_complexity Low_complexity 1 44 0 1722 88 4 0 chr3 9975773 9975999 -217548579 - AluSp SINE Alu 0 313 87 413 310 44 96 chr3 9976049 9976478 -217548100 + L2 LINE L2 2856 3262 -10 26 0 0 0 chr3 9977189 9977215 -217547363 + AT_rich Low_complexity Low_complexity 1 26 0 304 312 11 0 chr3 9977419 9977512 -217547066 - MIR SINE MIR -109 153 60 197 242 32 74 chr3 9977500 9977595 -217546983 - MIR SINE MIR -134 128 38 * 687 284 38 30 chr3 9978704 9978856 -217545722 + MIR SINE MIR 13 169 -93 192 40 0 0 chr3 9978856 9978881 -217545697 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 687 284 38 30 chr3 9978881 9978964 -217545614 + MIR SINE MIR 169 250 -12 228 250 69 0 chr3 9979096 9979168 -217545410 - L1P4 LINE L1 -714 5452 5376 319 304 6 82 chr3 9979234 9979405 -217545173 - MIR SINE MIR -71 191 34 565 216 35 9 chr3 9979676 9979792 -217544786 + FLAM_A SINE Alu 4 122 -11 968 248 98 15 chr3 9980015 9980350 -217544228 + L1ME2 LINE L1 5362 5724 -440 1433 266 93 30 chr3 9980356 9980795 -217543783 + LTR40a LTR ERVL 5 471 -48 1027 250 146 8 chr3 9980808 9981192 -217543386 + L1ME2 LINE L1 5727 6163 -1 545 332 30 17 chr3 9981204 9981436 -217543142 + MIR SINE MIR 28 262 0 23 0 0 0 chr3 9981853 9981876 -217542702 + AT_rich Low_complexity Low_complexity 1 23 0 2138 126 0 3 chr3 9981986 9982288 -217542290 - AluSx SINE Alu -11 301 1 21 36 0 0 chr3 9982298 9982326 -217542252 + AT_rich Low_complexity Low_complexity 1 28 0 392 227 117 63 chr3 9982406 9982706 -217541872 + L1MEd LINE L1 941 1256 -4863 1053 258 95 58 chr3 9982807 9983303 -217541275 - ERVL LTR ERVL -783 4981 4468 2959 248 75 44 chr3 9983552 9984826 -217539752 - L1M4 LINE L1 -1544 4602 3370 1580 172 34 27 chr3 9984826 9985122 -217539456 - AluJb SINE Alu -14 298 1 2959 248 75 44 chr3 9985122 9985178 -217539400 - L1M4 LINE L1 -2776 3370 3317 2121 112 0 41 chr3 9985178 9985346 -217539232 - AluSq SINE Alu -12 301 150 2155 99 0 47 chr3 9985346 9985668 -217538910 - AluY SINE Alu -4 307 1 2121 112 0 41 chr3 9985668 9985813 -217538765 - AluSq SINE Alu -163 150 1 2959 248 75 44 chr3 9985813 9985967 -217538611 - L1M4 LINE L1 -2829 3317 3070 580 239 89 28 chr3 9985981 9986161 -217538417 - MER58C DNA MER1_type -1 214 24 418 269 96 90 chr3 9986270 9986582 -217537996 - L1ME LINE L1 -5480 590 277 180 0 0 0 chr3 9986586 9986606 -217537972 + (CAT)n Simple_repeat Simple_repeat 2 21 0 222 261 185 0 chr3 9986773 9986838 -217537740 - MIR SINE MIR -173 89 13 198 309 73 29 chr3 9986836 9986972 -217537606 + MIR SINE MIR 111 252 -10 * 182 361 21 10 chr3 9987103 9987200 -217537378 + L2 LINE L2 2562 2659 -655 26 0 0 0 chr3 9987200 9987226 -217537352 + AT_rich Low_complexity Low_complexity 1 26 0 692 359 51 19 chr3 9987666 9988078 -217536500 - L2 LINE L2 -461 2853 2429 533 273 98 30 chr3 9988078 9988514 -217536064 - LTR33 LTR ERVL 0 521 1 505 332 118 19 chr3 9988514 9988785 -217535793 - L2 LINE L2 -891 2423 2126 1555 246 47 13 chr3 9988807 9989254 -217535324 + LTR40b LTR ERVL 1 462 0 288 320 176 35 chr3 9989305 9989561 -217535017 - L2 LINE L2 -2791 523 232 279 325 119 6 chr3 9989570 9989730 -217534848 - L2 LINE L2 -2905 409 232 5419 198 35 9 chr3 9990165 9992150 -217532428 - L1PA15 LINE L1 -4 6161 4127 218 253 0 21 chr3 9992667 9992762 -217531816 + CT-rich Low_complexity Low_complexity 3 95 0 622 274 153 21 chr3 9992803 9993321 -217531257 - L1MC5 LINE L1 -64 7897 7312 326 244 17 52 chr3 9995032 9995147 -217529431 + MIR SINE MIR 138 248 -14 2257 100 7 3 chr3 9996118 9996427 -217528151 - AluSx SINE Alu -2 310 1 5005 35 0 3 chr3 9997414 9998009 -217526569 - L1PA3 LINE L1 0 6155 5563 556 238 103 33 chr3 9998009 9998223 -217526355 - MLT1L LTR MaLR -368 247 19 334 253 12 0 chr3 9998373 9998456 -217526122 + MER103 DNA DNA 65 148 -18 21 36 0 0 chr3 9998456 9998484 -217526094 + AT_rich Low_complexity Low_complexity 1 28 0 247 329 76 40 chr3 9998883 9999715 -217524863 + L1MC4a LINE L1 4372 5233 -913 1211 236 22 31 chr3 9999804 10000164 -217524414 + L1MC4a LINE L1 5342 5698 -2110 265 360 11 11 chr3 10000195 10000373 -217524205 + L1MC4a LINE L1 6414 6591 -1217 327 208 104 10 chr3 10000542 10000638 -217523940 - MER103 DNA DNA -10 156 52 188 389 44 0 chr3 10000888 10000978 -217523600 - L2 LINE L2 -5 3308 3215 190 333 0 49 chr3 10001083 10001164 -217523414 - L2 LINE L2 -262 3010 2934 388 310 117 28 chr3 10001230 10001472 -217523106 + MIR SINE MIR 3 262 0 261 0 0 0 chr3 10002228 10002257 -217522321 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 211 0 0 chr3 10002600 10002652 -217521926 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 2909 196 63 114 chr3 10002823 10003752 -217520826 - MER21A LTR ERV1 -28 903 22 459 0 0 0 chr3 10003762 10003813 -217520765 + (TC)n Simple_repeat Simple_repeat 1 51 0 4653 246 74 25 chr3 10003927 10005542 -217519036 + L1MC4a LINE L1 6012 7705 -103 417 272 28 72 chr3 10006030 10006210 -217518368 - MIR SINE MIR -14 248 77 303 413 39 7 chr3 10006611 10006766 -217517812 - MIR3 SINE MIR -21 187 28 736 293 175 3 chr3 10007263 10007723 -217516855 + MLT1G1 LTR MaLR 5 594 -1 448 203 30 66 chr3 10009036 10009109 -217515469 + MER54A LTR ERVL 262 336 -489 1933 148 32 51 chr3 10009109 10009480 -217515098 - THE1B LTR MaLR 0 364 1 448 203 30 66 chr3 10009480 10009534 -217515044 + MER54A LTR ERVL 336 566 -259 270 0 0 0 chr3 10009803 10009833 -217514745 + (A)n Simple_repeat Simple_repeat 1 30 0 840 211 92 13 chr3 10011966 10012193 -217512385 - MLT2B1 LTR ERVL -275 245 1 410 287 73 90 chr3 10013441 10013728 -217510850 - L2 LINE L2 -440 2874 2595 563 222 102 40 chr3 10013728 10013904 -217510674 - MER5A DNA MER1_type -2 187 1 410 287 73 90 chr3 10013904 10014038 -217510540 - L2 LINE L2 -719 2595 2460 2441 67 10 3 chr3 10014252 10014550 -217510028 + AluY SINE Alu 1 300 -11 1269 161 0 9 chr3 10014499 10014710 -217509868 + AluSg/x SINE Alu 85 293 -19 211 322 61 17 chr3 10015850 10015965 -217508613 - L2 LINE L2 -8 3264 3145 215 372 80 9 chr3 10016589 10016702 -217507876 + L2 LINE L2 3151 3271 -1 2162 108 7 0 chr3 10016792 10017089 -217507489 - AluY SINE Alu -11 300 2 462 261 13 78 chr3 10018095 10018248 -217506330 + MIR SINE MIR 112 254 -8 1701 152 56 58 chr3 10018301 10018677 -217505901 + THE1C LTR MaLR 1 375 0 222 231 0 0 chr3 10019394 10019433 -217505145 - L2 LINE L2 -263 3050 3012 483 253 78 29 chr3 10019615 10019855 -217504723 + Charlie8 DNA MER1_type 63 1412 -1005 21 0 0 0 chr3 10020231 10020252 -217504326 + AT_rich Low_complexity Low_complexity 1 21 0 236 336 93 19 chr3 10020672 10020779 -217503799 + MIR SINE MIR 38 152 -110 1718 229 43 87 chr3 10020887 10021507 -217503071 - MLT1E2 LTR MaLR 0 626 1 2034 172 50 35 chr3 10021590 10022014 -217502564 + MSTB1 LTR MaLR 1 430 -2 377 176 0 0 chr3 10022656 10022724 -217501854 + L1M4 LINE L1 5585 5652 -532 803 229 76 36 chr3 10022798 10022889 -217501689 - MER110A LTR ERV1 0 468 382 1646 172 3 37 chr3 10022889 10023186 -217501392 + AluJo SINE Alu 1 287 -25 411 21 0 0 chr3 10023187 10023235 -217501343 + (GA)n Simple_repeat Simple_repeat 1 48 0 803 229 76 36 chr3 10023235 10023453 -217501125 - MER110A LTR ERV1 -85 383 170 376 226 59 0 chr3 10023536 10023638 -217500940 - MER110A LTR ERV1 -291 177 70 625 245 71 61 chr3 10025782 10025969 -217498609 + MIR SINE MIR 17 208 -54 2162 122 0 13 chr3 10025969 10026280 -217498298 + AluSc SINE Alu 1 307 -2 625 245 71 61 chr3 10026280 10026304 -217498274 + MIR SINE MIR 208 230 -32 201 268 63 35 chr3 10028655 10028778 -217495800 + MIR SINE MIR 23 154 -62 586 298 67 25 chr3 10029305 10029543 -217495035 - MIR SINE MIR -13 249 2 186 288 123 49 chr3 10029743 10029906 -217494672 - L2 LINE L2 -2 3270 3096 191 366 11 54 chr3 10030430 10030523 -217494055 - MER5A DNA MER1_type -3 186 98 1810 156 13 57 chr3 10030781 10031096 -217493482 - AluJb SINE Alu -11 301 1 434 297 58 0 chr3 10031189 10031327 -217493251 + MIR SINE MIR 46 191 -71 2360 97 0 3 chr3 10031609 10031919 -217492659 + AluY SINE Alu 1 309 -2 220 366 20 0 chr3 10032667 10032768 -217491810 - MIR SINE MIR -57 205 103 438 312 115 58 chr3 10032878 10033456 -217491122 - L2 LINE L2 -87 3226 2598 239 214 29 0 chr3 10033458 10033528 -217491050 + (TA)n Simple_repeat Simple_repeat 2 73 0 569 222 30 0 chr3 10033666 10033833 -217490745 - Charlie7 DNA MER1_type -253 2359 2188 310 268 65 14 chr3 10033996 10034134 -217490444 - Charlie7 DNA MER1_type -2120 492 348 214 211 19 106 chr3 10034192 10034296 -217490282 - MIR3 SINE MIR -17 191 97 245 226 19 0 chr3 10034328 10034381 -217490197 - L2 LINE L2 -38 3275 3222 1220 288 63 31 chr3 10034442 10034980 -217489598 + MLT1F1 LTR MaLR 11 565 -2 200 206 0 0 chr3 10035975 10036009 -217488569 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1206 205 92 68 chr3 10036043 10036487 -217488091 + MSTB2 LTR MaLR 1 455 -2 4259 247 158 44 chr3 10036487 10038043 -217486535 + MLT1F1-int LTR MaLR 2 1735 0 1097 225 132 48 chr3 10038043 10038461 -217486117 + MSTB2 LTR MaLR 1 453 -4 270 0 0 0 chr3 10038562 10038592 -217485986 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 192 304 101 0 chr3 10038733 10038802 -217485776 - MIR SINE MIR -32 230 155 250 250 0 16 chr3 10038852 10038916 -217485662 + MER112 DNA MER1_type 12 74 -186 257 291 133 12 chr3 10039028 10039193 -217485385 - MIR SINE MIR -44 218 34 22 0 0 0 chr3 10039555 10039577 -217485001 + AT_rich Low_complexity Low_complexity 1 22 0 336 352 81 12 chr3 10040448 10040695 -217483883 + L1ME LINE L1 5485 5748 -373 21 57 0 0 chr3 10040773 10040808 -217483770 + AT_rich Low_complexity Low_complexity 1 35 0 257 375 27 9 chr3 10040819 10040931 -217483647 + L2 LINE L2 3199 3312 -1 180 0 0 0 chr3 10041116 10041136 -217483442 + (TA)n Simple_repeat Simple_repeat 1 20 0 298 337 189 0 chr3 10041372 10041541 -217483037 + MIR SINE MIR 49 249 -13 4347 249 61 27 chr3 10041668 10045679 -217478899 - L1MDb LINE L1 -2249 4157 17 941 239 79 98 chr3 10045882 10046664 -217477914 + L1MC4 LINE L1 7276 8042 0 566 290 49 27 chr3 10047416 10047599 -217476979 + MIR SINE MIR 20 206 -56 255 381 0 0 chr3 10048200 10048284 -217476294 + MIR SINE MIR 12 95 -167 430 315 147 23 chr3 10048631 10049113 -217475465 - MLT1H1 LTR MaLR -3 552 11 451 228 125 27 chr3 10049198 10049400 -217475178 - MIR SINE MIR 0 262 34 2328 80 3 0 chr3 10049479 10049766 -217474812 - AluY SINE Alu -13 298 11 409 250 17 26 chr3 10050811 10050927 -217473651 - MIR SINE MIR -15 247 133 355 329 21 14 chr3 10051175 10051318 -217473260 - MIR SINE MIR -72 190 47 254 376 62 1 chr3 10051708 10051929 -217472649 + MIR SINE MIR 17 249 -13 238 356 19 25 chr3 10051939 10052099 -217472479 - L3 LINE CR1 -387 1190 1032 223 303 45 34 chr3 10052106 10052195 -217472383 + MIR3 SINE MIR 98 187 -21 204 40 0 0 chr3 10052275 10052300 -217472278 + (TG)n Simple_repeat Simple_repeat 1 25 0 182 177 139 51 chr3 10052533 10052612 -217471966 - MIR SINE MIR -56 206 121 233 370 44 7 chr3 10053968 10054103 -217470475 + L2 LINE L2 2898 3037 -276 1393 240 61 16 chr3 10054132 10054511 -217470067 - MSTD LTR MaLR 0 396 1 5629 234 57 48 chr3 10054511 10056224 -217468354 - MSTD-int LTR MaLR 0 1735 9 1097 248 54 54 chr3 10056232 10056623 -217467955 - MSTD LTR MaLR 0 396 6 220 320 0 27 chr3 10056741 10056816 -217467762 + L2 LINE L2 3238 3310 -3 21 36 0 0 chr3 10058094 10058122 -217466456 + AT_rich Low_complexity Low_complexity 1 28 0 1227 198 115 114 chr3 10058642 10059188 -217465390 + MER44D DNA MER2_type 1 602 -3 181 333 51 62 chr3 10059343 10059520 -217465058 + L3b LINE CR1 1209 1383 -200 369 353 7 26 chr3 10060032 10060185 -217464393 + L2 LINE L2 3122 3271 -1 1446 203 33 0 chr3 10060368 10060674 -217463904 + MER58B DNA MER1_type 25 340 -1 1606 168 14 25 chr3 10061563 10061848 -217462730 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr3 10061857 10061880 -217462698 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 219 150 0 0 chr3 10062266 10062306 -217462272 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1246 203 21 0 chr3 10063179 10063460 -217461118 + L1MA4 LINE L1 6014 6300 0 321 324 145 6 chr3 10063682 10063861 -217460717 + MIR SINE MIR 57 260 -2 460 226 39 0 chr3 10064713 10064815 -217459763 + MIR SINE MIR 81 186 -76 744 181 44 93 chr3 10064958 10065184 -217459394 - MER20 DNA MER1_type -4 215 1 1560 174 9 76 chr3 10065564 10065892 -217458686 + AluJb SINE Alu 1 306 -6 2453 76 0 19 chr3 10065893 10066209 -217458369 + AluY SINE Alu 1 310 -1 1903 140 4 4 chr3 10067060 10067390 -217457188 - AluSx SINE Alu 0 336 7 250 286 0 0 chr3 10067536 10067592 -217456986 - MIR SINE MIR -155 107 52 412 228 100 74 chr3 10068656 10068857 -217455721 - MIR SINE MIR -47 215 14 1070 161 0 0 chr3 10068917 10069078 -217455500 + AluSg/x SINE Alu 135 295 -17 1161 260 91 61 chr3 10069418 10069926 -217454652 - MLT1G1 LTR MaLR -41 554 32 1812 188 46 6 chr3 10070998 10071349 -217453229 + MLT1A1 LTR MaLR 1 365 0 197 153 125 56 chr3 10072356 10072428 -217452150 - MIR SINE MIR -120 142 66 1046 216 35 109 chr3 10072447 10072850 -217451728 + MLT1A2 LTR MaLR 2 374 0 7696 23 0 0 chr3 10073819 10074979 -217449599 + L1PA3 LINE L1 4993 6152 -3 273 340 53 0 chr3 10074999 10075093 -217449485 + MER5A DNA MER1_type 35 133 -56 607 252 0 0 chr3 10075094 10075221 -217449357 - FLAM_A SINE Alu -6 127 1 9730 217 27 7 chr3 10075276 10078817 -217445761 - L1PA16 LINE L1 -27 6139 2542 245 297 16 0 chr3 10078958 10079022 -217445556 + L2 LINE L2 3204 3268 -4 227 247 34 45 chr3 10079182 10079271 -217445307 - L1ME LINE L1 -459 5662 5575 198 0 0 0 chr3 10079558 10079580 -217444998 + (TTG)n Simple_repeat Simple_repeat 2 23 0 6746 64 14 12 chr3 10079647 10081062 -217443516 - L1PA7 LINE L1 -3 6151 4739 8394 89 140 3 chr3 10081063 10082471 -217442107 - L1PA7 LINE L1 -1541 4605 3005 4308 107 5 32 chr3 10082467 10083212 -217441366 + L1PA7 LINE L1 2275 2999 -3147 * 2136 139 3 0 chr3 10083716 10084017 -217440561 - AluSx SINE Alu -10 302 1 652 257 89 25 chr3 10084021 10084223 -217440355 - MIR SINE MIR -45 217 3 232 250 117 0 chr3 10084223 10084280 -217440298 - MIR SINE MIR -61 147 84 216 97 0 0 chr3 10084989 10085020 -217439558 + (A)n Simple_repeat Simple_repeat 1 31 0 208 364 0 0 chr3 10085250 10085327 -217439251 + MIR SINE MIR 53 129 -133 344 351 0 0 chr3 10085501 10085578 -217439000 + MER91A DNA MER1_type 67 143 -53 198 364 0 11 chr3 10085811 10085899 -217438679 + MIR SINE MIR 9 95 -167 401 334 124 29 chr3 10085929 10086146 -217438432 - LTR16C LTR ERVL -63 428 170 1486 247 87 35 chr3 10086146 10086661 -217437917 + MLT1F LTR MaLR 1 542 0 401 334 124 29 chr3 10086661 10086757 -217437821 - LTR16C LTR ERVL -321 170 85 2160 137 0 6 chr3 10087802 10088115 -217436463 - AluSq SINE Alu -2 311 1 2403 86 0 3 chr3 10089098 10089400 -217435178 + AluSg1 SINE Alu 1 301 -8 2894 194 37 6 chr3 10089763 10090437 -217434141 + L1MB7 LINE L1 5471 6165 -19 447 248 4 26 chr3 10090504 10090705 -217433873 + L1ME3A LINE L1 5745 5940 -230 1676 229 31 11 chr3 10091482 10091940 -217432638 - MLT1C LTR MaLR 0 467 1 327 344 33 41 chr3 10091984 10092254 -217432324 + L2 LINE L2 2864 3131 -182 2231 109 7 0 chr3 10092255 10092549 -217432029 - AluSc SINE Alu -13 296 1 23 33 0 0 chr3 10092559 10092589 -217431989 + AT_rich Low_complexity Low_complexity 1 30 0 190 300 125 12 chr3 10092655 10092735 -217431843 + L2 LINE L2 3191 3279 -34 249 108 0 0 chr3 10092758 10092795 -217431783 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 272 292 56 0 chr3 10092906 10092995 -217431583 + MIR SINE MIR 66 159 -103 1434 183 44 7 chr3 10093862 10094136 -217430442 - AluJo SINE Alu -5 307 24 202 252 84 42 chr3 10094147 10094266 -217430312 + MIR SINE MIR 16 139 -123 196 308 112 95 chr3 10094366 10094429 -217430149 + L2 LINE L2 3099 3159 -113 681 237 25 30 chr3 10094429 10094665 -217429913 - MER106A DNA MER1_type -1 235 1 196 308 112 95 chr3 10094665 10094770 -217429808 + L2 LINE L2 3159 3270 -2 546 268 21 16 chr3 10095350 10095544 -217429034 + L1ME3A LINE L1 5942 6136 -34 371 253 133 19 chr3 10095602 10095760 -217428818 + MIR SINE MIR 87 262 0 231 265 41 20 chr3 10095896 10095994 -217428584 - L1MC4 LINE L1 -17 8025 7926 2630 43 0 0 chr3 10096898 10097201 -217427377 - AluY SINE Alu 0 311 9 592 256 6 36 chr3 10097234 10097402 -217427176 + MER5B DNA MER1_type 6 168 -10 2259 176 26 14 chr3 10097780 10098207 -217426371 + MSTB1 LTR MaLR 1 432 0 1280 227 68 49 chr3 10098763 10099191 -217425387 - MER63B DNA MER1_type 0 436 1 307 288 72 85 chr3 10099634 10099870 -217424708 - L1MC4a LINE L1 -1761 6047 5815 532 194 12 31 chr3 10099952 10100281 -217424297 + CT-rich Low_complexity Low_complexity 1 322 0 369 0 0 0 chr3 10100281 10100322 -217424256 + (TG)n Simple_repeat Simple_repeat 2 42 0 211 316 52 73 chr3 10100482 10100618 -217423960 + MIR SINE MIR 14 146 -116 244 399 21 7 chr3 10100620 10100763 -217423815 + MIR SINE MIR 2 146 -116 1470 259 42 24 chr3 10100764 10101263 -217423315 + LTR40a LTR ERVL 12 519 0 45 19 0 0 chr3 10101283 10101335 -217423243 + AT_rich Low_complexity Low_complexity 1 52 0 180 148 0 0 chr3 10101471 10101498 -217423080 + L2 LINE L2 3216 3242 -30 1578 148 26 26 chr3 10101501 10101812 -217422766 - THE1C LTR MaLR 0 375 65 8371 125 12 29 chr3 10101814 10103169 -217421409 - THE1C-int LTR MaLR -247 1333 2 2006 146 10 51 chr3 10103170 10103561 -217421017 - THE1C LTR MaLR 0 375 1 324 357 35 15 chr3 10104045 10104244 -217420334 - L2 LINE L2 -3 3310 3108 316 162 0 81 chr3 10104267 10104341 -217420237 - MLT1J2 LTR MaLR -38 412 345 505 274 22 15 chr3 10104704 10104839 -217419739 + MIR SINE MIR 16 151 -111 1686 205 55 3 chr3 10105705 10106052 -217418526 - MLT1A1 LTR MaLR 0 365 1 227 308 30 38 chr3 10106052 10106185 -217418393 + MIR SINE MIR 107 238 -24 397 310 51 112 chr3 10106245 10106619 -217417959 - L2 LINE L2 -4 3268 2918 182 365 49 71 chr3 10106672 10107039 -217417539 - L2 LINE L2 -510 2804 2446 26 30 0 0 chr3 10107441 10107474 -217417104 + AT_rich Low_complexity Low_complexity 1 33 0 184 169 14 141 chr3 10107611 10107682 -217416896 - L3b LINE CR1 -224 1359 1298 220 246 129 76 chr3 10107851 10108022 -217416556 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10109136 10109297 -217415281 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10109436 10109792 -217414786 - MLT1B LTR MaLR -11 379 3 475 227 213 13 chr3 10110208 10110358 -217414220 + MER5A DNA MER1_type 10 189 0 25 51 0 0 chr3 10110542 10110581 -217413997 + AT_rich Low_complexity Low_complexity 1 39 0 241 294 88 0 chr3 10111084 10111152 -217413426 + L2 LINE L2 3181 3254 -18 184 167 19 93 chr3 10111110 10111164 -217413414 + MIR SINE MIR 209 258 -4 * 23 33 0 0 chr3 10112048 10112078 -217412500 + AT_rich Low_complexity Low_complexity 1 30 0 207 284 45 34 chr3 10113560 10113648 -217410930 - L2 LINE L2 -40 3273 3185 469 309 176 5 chr3 10113927 10114137 -217410441 - MIR SINE MIR -2 260 15 27 0 0 0 chr3 10114347 10114374 -217410204 + AT_rich Low_complexity Low_complexity 1 27 0 261 343 25 29 chr3 10114426 10114572 -217410006 - MIR SINE MIR -46 162 16 211 293 40 27 chr3 10115009 10115084 -217409494 - L2 LINE L2 -68 3245 3170 237 360 20 39 chr3 10115346 10115499 -217409079 - L2 LINE L2 -548 2766 2617 200 369 72 18 chr3 10115658 10115769 -217408809 - L2 LINE L2 -793 2521 2405 198 0 0 0 chr3 10115807 10115829 -217408749 + (T)n Simple_repeat Simple_repeat 1 22 0 840 231 44 15 chr3 10115829 10116032 -217408546 - MER58A DNA MER1_type -15 209 1 22 35 0 0 chr3 10116059 10116088 -217408490 + AT_rich Low_complexity Low_complexity 1 29 0 541 196 40 111 chr3 10117028 10117169 -217407409 - LTR39 LTR ERV1 0 783 658 2256 112 3 3 chr3 10117169 10117481 -217407097 + AluSx SINE Alu 1 312 0 541 196 40 111 chr3 10117481 10117538 -217407040 - LTR39 LTR ERV1 -125 658 599 1197 176 43 79 chr3 10117590 10117919 -217406659 - LTR39 LTR ERV1 -456 327 11 816 153 13 38 chr3 10117964 10118121 -217406457 - THE1B LTR MaLR 0 364 212 6287 112 177 79 chr3 10118128 10119671 -217404907 + pTR5 LTR ERV1 743 2436 -2 1398 126 0 14 chr3 10119677 10119891 -217404687 - THE1B LTR MaLR -153 211 1 11499 96 9 2 chr3 10119891 10121461 -217403117 - THE1B-int LTR MaLR 0 1580 1 2328 133 3 35 chr3 10121461 10121837 -217402741 - THE1B LTR MaLR 0 364 1 789 253 6 6 chr3 10121921 10122099 -217402479 - MER5B DNA MER1_type 0 178 1 2167 94 0 11 chr3 10122241 10122527 -217402051 + AluY SINE Alu 1 283 -28 516 16 0 0 chr3 10122527 10122588 -217401990 + (TA)n Simple_repeat Simple_repeat 1 61 0 28 0 0 0 chr3 10123796 10123824 -217400754 + AT_rich Low_complexity Low_complexity 1 28 0 328 271 0 85 chr3 10123824 10123865 -217400713 - MLT1L LTR MaLR -181 434 391 2191 116 0 0 chr3 10123865 10124159 -217400419 - AluSg SINE Alu -14 296 3 328 271 0 85 chr3 10124159 10124235 -217400343 - MLT1L LTR MaLR -224 391 327 501 276 65 5 chr3 10126522 10126721 -217397857 - MLT1K LTR MaLR 0 588 378 679 222 99 0 chr3 10126907 10127078 -217397500 + MER5A DNA MER1_type 1 188 -1 229 316 0 13 chr3 10127086 10127162 -217397416 - MLT1K LTR MaLR -412 176 102 217 361 83 18 chr3 10127763 10127932 -217396646 - MER5A DNA MER1_type 0 189 10 * 238 340 110 0 chr3 10127929 10128029 -217396549 + MIR SINE MIR 12 122 -140 260 300 60 56 chr3 10132476 10132652 -217391926 - MER5B DNA MER1_type 0 178 12 363 299 31 0 chr3 10133097 10133224 -217391354 - MER117 DNA MER1_type -35 162 32 193 401 80 0 chr3 10133525 10133662 -217390916 - L2 LINE L2 -2 3270 3123 1955 238 31 53 chr3 10135858 10136229 -217388349 + L1ME1 LINE L1 5468 5817 -349 2121 128 0 0 chr3 10136229 10136518 -217388060 + AluSx SINE Alu 1 289 -23 1955 238 31 53 chr3 10136518 10136856 -217387722 + L1ME1 LINE L1 5817 6161 -5 213 283 17 0 chr3 10137021 10137081 -217387497 + MIR SINE MIR 202 262 0 207 361 84 40 chr3 10137167 10137416 -217387162 - L2 LINE L2 -410 2904 2645 834 257 10 5 chr3 10140022 10140228 -217384350 + MER58A DNA MER1_type 11 217 -7 611 325 94 35 chr3 10140237 10140717 -217383861 + L2 LINE L2 2805 3312 -1 411 344 0 21 chr3 10141052 10141293 -217383285 + L1ME LINE L1 5467 5702 -419 519 328 21 5 chr3 10141400 10141586 -217382992 - MIR SINE MIR -9 253 65 596 237 0 0 chr3 10141656 10141770 -217382808 + MIR SINE MIR 88 201 -61 917 300 132 26 chr3 10141796 10142338 -217382240 - L2 LINE L2 -14 3299 2687 227 309 0 15 chr3 10142346 10142414 -217382164 + MIR SINE MIR 186 252 -10 577 292 242 11 chr3 10143026 10143582 -217380996 - L2 LINE L2 0 3313 2625 366 261 59 59 chr3 10144006 10144125 -217380453 - MER91C DNA MER1_type -21 119 1 219 114 0 0 chr3 10144642 10144677 -217379901 + (TG)n Simple_repeat Simple_repeat 2 36 0 606 285 126 22 chr3 10144769 10145039 -217379539 - L2 LINE L2 0 3313 3016 1838 284 127 51 chr3 10145294 10146689 -217377889 - L2 LINE L2 -218 3095 1586 2167 169 70 5 chr3 10146724 10147126 -217377452 - MSTA LTR MaLR 0 428 1 437 211 78 0 chr3 10147126 10147216 -217377362 - MER58 DNA MER1_type -118 97 1 262 330 61 9 chr3 10148730 10148845 -217375733 - MIR3 SINE MIR -25 183 63 257 320 39 0 chr3 10150240 10150343 -217374235 + MIR SINE MIR 37 143 -65 205 290 65 43 chr3 10150657 10150750 -217373828 + L2 LINE L2 2852 2946 -326 1047 196 66 35 chr3 10150750 10151067 -217373511 + Charlie4a DNA MER1_type 181 507 -1 236 292 91 13 chr3 10151278 10151432 -217373146 - MLT1L LTR MaLR 0 615 450 189 0 0 0 chr3 10151784 10151805 -217372773 + (A)n Simple_repeat Simple_repeat 1 21 0 1021 215 11 76 chr3 10153490 10153872 -217370706 - LTR37A LTR ERV1 -52 374 18 1798 238 68 100 chr3 10153908 10155075 -217369503 - MER31-int LTR ERV1 -692 4244 3116 211 361 41 10 chr3 10155290 10155387 -217369191 - MER5B DNA MER1_type -78 100 1 853 235 27 23 chr3 10155480 10155701 -217368877 - MER58A DNA MER1_type -2 222 1 2106 116 0 20 chr3 10156234 10156537 -217368041 - AluSx SINE Alu -14 298 2 248 298 43 0 chr3 10157012 10157106 -217367472 + Charlie1 DNA MER1_type 2635 2732 -29 5831 107 19 0 chr3 10157436 10158828 -217365750 - L1PA14 LINE L1 0 6161 4744 1151 285 101 32 chr3 10158987 10159520 -217365058 - L2 LINE L2 -1547 1767 1198 562 273 12 6 chr3 10160815 10160980 -217363598 + MIR SINE MIR 87 252 -10 196 337 12 12 chr3 10161253 10161336 -217363242 - MIR3 SINE MIR -11 197 115 245 232 253 0 chr3 10161384 10161483 -217363095 - MER5A DNA MER1_type -22 167 44 524 289 80 30 chr3 10161852 10162053 -217362525 + MIR SINE MIR 7 217 -45 182 246 33 16 chr3 10162073 10162134 -217362444 - L2 LINE L2 -49 3223 3162 392 250 56 21 chr3 10162244 10162388 -217362190 + L3 LINE CR1 1192 1340 -237 1985 134 0 3 chr3 10163685 10163989 -217360589 + AluSx SINE Alu 1 303 0 233 222 37 25 chr3 10164002 10164083 -217360495 - L1ME3A LINE L1 -97 6073 5992 270 275 19 62 chr3 10164880 10165040 -217359538 - L1M4c LINE L1 -4966 1418 1266 371 267 20 14 chr3 10165562 10165708 -217358870 + (TA)n Simple_repeat Simple_repeat 1 147 0 376 316 86 48 chr3 10166590 10166799 -217357779 + L1M4 LINE L1 4563 4762 -1384 939 90 45 0 chr3 10166799 10166932 -217357646 + MER85 DNA T2_type 1 139 0 376 316 86 48 chr3 10166932 10167176 -217357402 + L1M4 LINE L1 4762 5033 -1113 265 303 97 36 chr3 10167670 10167835 -217356743 + MIR SINE MIR 87 261 -1 396 263 69 46 chr3 10167903 10168078 -217356500 + MIR SINE MIR 79 257 -5 375 206 63 16 chr3 10169914 10170040 -217354538 + MER53 DNA DNA 55 186 -3 290 77 0 0 chr3 10170584 10170623 -217353955 - MADE1 DNA Mariner -41 39 1 243 321 32 22 chr3 10171696 10171818 -217352760 - MIR SINE MIR -46 216 91 214 253 160 27 chr3 10171905 10171980 -217352598 - L2 LINE L2 -1 3271 3187 204 338 29 0 chr3 10172127 10172195 -217352383 - L2 LINE L2 -65 3207 3138 1146 219 302 16 chr3 10172385 10172829 -217351749 - MLT2F LTR ERVL -88 575 5 188 283 98 22 chr3 10173748 10173840 -217350738 + MIR SINE MIR 91 189 -73 261 270 230 0 chr3 10173886 10174038 -217350540 - L2 LINE L2 -154 3159 2973 279 320 48 10 chr3 10174336 10174439 -217350139 + MIR SINE MIR 150 256 -6 213 310 0 0 chr3 10174601 10174659 -217349919 - L2 LINE L2 -225 3047 2990 186 349 106 0 chr3 10175143 10175209 -217349369 - MIR SINE MIR -63 145 73 886 191 12 0 chr3 10175209 10175371 -217349207 + AluJo SINE Alu 119 282 -30 2015 196 76 5 chr3 10176109 10176543 -217348035 - MLT1C LTR MaLR 0 467 3 1923 166 27 14 chr3 10177326 10177694 -217346884 - MLT1B LTR MaLR 0 390 18 194 287 178 10 chr3 10177928 10178029 -217346549 - L2 LINE L2 -4 3309 3192 181 286 18 36 chr3 10178076 10178132 -217346446 + L2 LINE L2 3188 3242 -30 236 250 31 16 chr3 10178262 10178326 -217346252 + MIR3 SINE MIR 120 184 -24 246 333 12 12 chr3 10178336 10178420 -217346158 - L2 LINE L2 -198 3074 2991 1205 227 69 40 chr3 10178968 10179347 -217345231 - MLT1B LTR MaLR 0 390 1 191 374 0 30 chr3 10181205 10181304 -217343274 - L2 LINE L2 -49 3264 3169 874 211 0 63 chr3 10181304 10181527 -217343051 - MER20 DNA MER1_type -1 218 10 398 331 150 30 chr3 10181607 10182019 -217342559 - L2 LINE L2 -200 3113 2647 808 239 109 13 chr3 10182920 10183158 -217341420 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10184183 10184206 -217340372 + (A)n Simple_repeat Simple_repeat 1 23 0 2355 78 0 28 chr3 10184207 10184527 -217340051 + AluY SINE Alu 1 311 0 796 227 77 0 chr3 10184696 10184890 -217339688 + MER3 DNA MER1_type 1 209 0 1701 173 7 26 chr3 10185373 10185679 -217338899 - AluJo SINE Alu -12 300 1 219 340 60 50 chr3 10185877 10185977 -217338601 + L2 LINE L2 2988 3088 -184 700 267 0 12 chr3 10186836 10187008 -217337570 - FRAM SINE Alu -3 173 4 1077 209 51 13 chr3 10189435 10189743 -217334835 - L1ME2 LINE L1 -29 6135 5818 324 274 32 95 chr3 10191191 10191381 -217333197 - MER5B DNA MER1_type 0 178 1 268 338 0 0 chr3 10191882 10191959 -217332619 - MER5A DNA MER1_type -109 80 4 231 314 14 0 chr3 10192443 10192513 -217332065 + L2 LINE L2 3239 3309 -4 257 300 32 12 chr3 10192868 10192976 -217331602 + MIR SINE MIR 6 118 -90 296 300 18 0 chr3 10193140 10193250 -217331328 - Charlie8 DNA MER1_type -2253 164 53 214 203 14 14 chr3 10193707 10193781 -217330797 + (TA)n Simple_repeat Simple_repeat 2 75 0 224 217 22 0 chr3 10193815 10193861 -217330717 + (TG)n Simple_repeat Simple_repeat 2 48 0 300 322 0 0 chr3 10193861 10193951 -217330627 - L1MC4 LINE L1 -1339 6703 6614 2423 97 0 0 chr3 10194970 10195280 -217329298 + AluSg SINE Alu 1 310 0 2105 113 0 7 chr3 10195882 10196195 -217328383 - AluSg SINE Alu 0 311 1 195 333 228 21 chr3 10197100 10197565 -217327013 - L2 LINE L2 -349 2923 2372 24 67 0 0 chr3 10197943 10197988 -217326590 + AT_rich Low_complexity Low_complexity 1 45 0 2329 102 0 7 chr3 10198068 10198371 -217326207 + AluSx SINE Alu 1 301 -11 2402 47 0 60 chr3 10198773 10199091 -217325487 - AluY SINE Alu -12 299 1 350 330 18 41 chr3 10199911 10200132 -217324446 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10200416 10200586 -217323992 - AluSg/x SINE Alu -7 303 134 505 237 15 0 chr3 10201859 10201990 -217322588 + MER94 DNA DNA 2 134 0 308 264 104 35 chr3 10202141 10202285 -217322293 + MIR SINE MIR 28 181 -81 253 297 73 70 chr3 10202633 10202906 -217321672 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10203481 10203601 -217320977 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10204267 10204358 -217320220 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10205163 10205216 -217319362 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10205622 10205779 -217318799 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10205911 10206227 -217318351 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10206251 10206281 -217318297 + (CA)n Simple_repeat Simple_repeat 1 30 0 186 231 0 0 chr3 10209185 10209224 -217315354 + L2 LINE L2 3258 3296 -17 538 326 19 25 chr3 10209829 10210151 -217314427 + L1MC4 LINE L1 7271 7590 -452 * 2570 237 66 22 chr3 10210144 10211216 -217313362 + L1ME1 LINE L1 4428 5601 -565 2441 62 0 3 chr3 10211216 10211524 -217313054 + AluY SINE Alu 1 307 -4 2570 237 66 22 chr3 10211524 10212071 -217312507 + L1ME1 LINE L1 5601 6122 -44 424 203 122 14 chr3 10211967 10212115 -217312463 + L1MA10 LINE L1 6169 6332 -2 * 467 284 130 17 chr3 10212117 10212526 -217312052 + L1MC4 LINE L1 7588 8042 0 896 250 43 20 chr3 10212844 10213144 -217311434 - LTR16A LTR ERVL -49 401 95 185 324 28 39 chr3 10213503 10213619 -217310959 - MIR SINE MIR -119 89 7 1141 68 7 0 chr3 10214221 10214369 -217310209 - L1PA7 LINE L1 -7 6147 5999 28 29 0 0 chr3 10214657 10214692 -217309886 + AT_rich Low_complexity Low_complexity 1 35 0 2610 36 0 13 chr3 10214869 10215178 -217309400 - AluY SINE Alu -6 305 1 203 321 75 38 chr3 10215395 10215501 -217309077 + MIR3 SINE MIR 7 116 -92 197 162 0 27 chr3 10215695 10215732 -217308846 - L2 LINE L2 -95 3218 3183 374 300 29 43 chr3 10216112 10216252 -217308326 - L2 LINE L2 -556 2758 2621 27 62 0 0 chr3 10216439 10216487 -217308091 + AT_rich Low_complexity Low_complexity 1 48 0 1265 170 9 27 chr3 10216761 10216985 -217307593 + AluJo SINE Alu 75 294 -18 263 355 11 0 chr3 10218033 10218126 -217306452 - L2 LINE L2 -6 3266 3173 208 162 27 0 chr3 10218143 10218180 -217306398 + CT-rich Low_complexity Low_complexity 2 39 0 311 378 28 11 chr3 10218258 10218438 -217306140 - L2 LINE L2 -256 3057 2875 249 290 21 21 chr3 10218695 10218788 -217305790 - MIR SINE MIR -136 126 34 521 313 47 5 chr3 10218949 10219141 -217305437 - L2 LINE L2 -191 3081 2882 197 279 49 0 chr3 10221662 10221723 -217302855 - MIR SINE MIR -151 111 48 2319 55 41 10 chr3 10222314 10222607 -217301971 - AluY SINE Alu -9 302 1 443 284 40 27 chr3 10222783 10222931 -217301647 - MIR SINE MIR -3 259 110 2243 126 0 0 chr3 10223901 10224202 -217300376 - AluSq SINE Alu -10 303 3 906 137 167 18 chr3 10224209 10224436 -217300142 - L1MA8 LINE L1 0 6291 6031 465 292 19 19 chr3 10225527 10225681 -217298897 - MIR SINE MIR 0 262 109 425 84 0 84 chr3 10225721 10225792 -217298786 - AluY SINE Alu -45 266 202 1320 171 54 0 chr3 10226095 10226151 -217298427 + Tigger3(Golem) DNA MER2_type 2 54 -2975 207 0 0 0 chr3 10226160 10226183 -217298395 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1597 135 96 4 chr3 10226183 10226433 -217298145 - AluSx SINE Alu -22 290 14 1320 171 54 0 chr3 10226433 10226675 -217297903 + Tigger3(Golem) DNA MER2_type 54 3029 0 2358 93 0 3 chr3 10226692 10227004 -217297574 + AluY SINE Alu 1 311 0 915 196 127 18 chr3 10227017 10227237 -217297341 - MIR SINE MIR -13 249 6 2444 131 120 0 chr3 10227471 10227945 -217296633 + L1PA16 LINE L1 5635 6165 -1 27 0 0 0 chr3 10227989 10228016 -217296562 + AT_rich Low_complexity Low_complexity 1 27 0 305 353 75 8 chr3 10231434 10231567 -217293011 + MIR SINE MIR 29 170 -92 2542 67 3 3 chr3 10231766 10232079 -217292499 + AluSp SINE Alu 1 313 0 297 0 0 0 chr3 10232252 10232285 -217292293 + (CA)n Simple_repeat Simple_repeat 2 34 0 498 350 51 5 chr3 10232553 10232767 -217291811 - MIR SINE MIR -38 224 1 722 192 13 98 chr3 10233322 10233546 -217291032 + MER3 DNA MER1_type 5 209 0 205 191 0 0 chr3 10240097 10240139 -217284439 + (TAA)n Simple_repeat Simple_repeat 1 42 0 211 326 141 0 chr3 10241142 10241234 -217283344 + MIR SINE MIR 45 149 -113 2199 123 0 0 chr3 10241361 10241671 -217282907 - AluSg SINE Alu 0 310 1 306 302 63 0 chr3 10242351 10242474 -217282104 - MIR SINE MIR -68 140 39 186 133 0 0 chr3 10242678 10242708 -217281870 + (T)n Simple_repeat Simple_repeat 1 30 0 392 240 232 0 chr3 10243894 10244019 -217280559 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10244601 10244675 -217279903 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10245311 10245551 -217279027 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10245593 10245779 -217278799 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10247037 10247171 -217277407 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10248029 10248261 -217276317 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10248327 10248436 -217276142 - MER20 DNA MER1_type 0 219 110 2338 86 3 10 chr3 10251011 10251314 -217273264 - AluY SINE Alu -10 301 1 183 370 74 0 chr3 10251556 10251637 -217272941 + L2 LINE L2 3151 3237 -35 330 276 234 0 chr3 10251930 10252075 -217272503 - MER5A DNA MER1_type 0 189 11 440 244 40 45 chr3 10252695 10252871 -217271707 - MER5B DNA MER1_type -3 175 1 863 230 6 0 chr3 10252894 10253059 -217271519 + MER5A DNA MER1_type 6 171 -18 277 313 0 12 chr3 10253295 10253378 -217271200 - L3 LINE CR1 -92 1485 1404 375 327 46 0 chr3 10253378 10253531 -217271047 - MIR SINE MIR -24 238 79 417 307 153 70 chr3 10255337 10255780 -217268798 - L2 LINE L2 -338 2976 2497 975 264 105 24 chr3 10256171 10256553 -217268025 - MER77 LTR ERV1 -15 590 178 216 0 0 0 chr3 10257643 10257667 -217266911 + (T)n Simple_repeat Simple_repeat 1 24 0 292 279 27 27 chr3 10258125 10258236 -217266342 - L2 LINE L2 -184 3088 2978 211 200 43 0 chr3 10258554 10258624 -217265954 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 80 0 0 chr3 10258942 10258992 -217265586 + AT_rich Low_complexity Low_complexity 1 50 0 198 286 69 57 chr3 10260559 10260734 -217263844 + L2 LINE L2 2937 3113 -159 617 251 108 71 chr3 10260880 10261285 -217263293 - L2 LINE L2 -185 3128 2712 246 281 108 19 chr3 10261858 10261974 -217262604 + MIR SINE MIR 51 172 -67 185 154 26 0 chr3 10262119 10262158 -217262420 + CT-rich Low_complexity Low_complexity 2 41 0 344 207 0 0 chr3 10262352 10262434 -217262144 - L1MB1 LINE L1 -4 6185 6104 1103 221 58 68 chr3 10262488 10262837 -217261741 - MLT1C LTR MaLR -75 392 46 2222 109 10 19 chr3 10262837 10263150 -217261428 - AluSx SINE Alu -2 310 1 1103 221 58 68 chr3 10263150 10263194 -217261384 - MLT1C LTR MaLR -421 46 3 381 265 105 25 chr3 10263217 10263379 -217261199 + MIR SINE MIR 12 186 -76 276 30 0 0 chr3 10263504 10263537 -217261041 + (T)n Simple_repeat Simple_repeat 1 33 0 414 266 219 0 chr3 10264199 10264327 -217260251 + MER5A DNA MER1_type 27 182 -7 1569 177 23 43 chr3 10264890 10265190 -217259388 + AluJo SINE Alu 1 294 -18 505 279 110 50 chr3 10265239 10265458 -217259120 - MIR SINE MIR -2 260 29 546 253 188 10 chr3 10267755 10267957 -217256621 + MIR SINE MIR 25 262 0 1989 82 0 0 chr3 10269243 10269488 -217255090 + AluY SINE Alu 1 245 -66 423 0 0 0 chr3 10269492 10269539 -217255039 + (CA)n Simple_repeat Simple_repeat 2 48 0 214 313 0 24 chr3 10269648 10269731 -217254847 + (ATG)n Simple_repeat Simple_repeat 3 83 0 314 337 112 5 chr3 10269746 10269951 -217254627 - MIR SINE MIR -34 228 2 238 191 43 0 chr3 10270481 10270528 -217254050 + L2 LINE L2 3224 3272 0 618 273 12 12 chr3 10270624 10270785 -217253793 + MIR SINE MIR 92 252 -10 609 250 20 46 chr3 10271954 10272150 -217252428 - MIR SINE MIR -4 258 69 2052 126 17 0 chr3 10272161 10272454 -217252124 - AluSx SINE Alu -14 298 1 342 67 0 0 chr3 10272520 10272565 -217252013 - Alu SINE Alu -20 282 238 294 266 184 5 chr3 10272712 10272919 -217251659 - L1MC4 LINE L1 -18 8024 7781 1548 174 11 14 chr3 10273291 10273567 -217251011 + AluJo SINE Alu 13 287 -25 1244 158 4 79 chr3 10274468 10274733 -217249845 - AluJo SINE Alu -8 304 60 368 320 56 32 chr3 10274775 10275025 -217249553 - L2 LINE L2 -104 3209 2954 468 0 0 0 chr3 10276326 10276378 -217248200 + (TA)n Simple_repeat Simple_repeat 1 52 0 531 259 99 28 chr3 10276402 10276726 -217247852 - L1MC4 LINE L1 -163 7879 7533 313 276 69 83 chr3 10276824 10277041 -217247537 - L1ME4a LINE L1 -246 5875 5662 220 330 140 10 chr3 10277404 10277504 -217247074 + L2 LINE L2 3150 3262 -10 1267 252 119 50 chr3 10277907 10278531 -217246047 - PABL_B LTR ERV1 0 667 1 2187 253 88 10 chr3 10278807 10279413 -217245165 - MER82 DNA MER2_type 0 653 1 2337 91 0 0 chr3 10279420 10279582 -217244996 - AluSc SINE Alu -13 296 132 2274 119 0 0 chr3 10279582 10279885 -217244693 - AluSg SINE Alu -7 303 1 2337 91 0 0 chr3 10279885 10280018 -217244560 - AluSc SINE Alu -176 133 1 228 35 0 0 chr3 10280018 10280047 -217244531 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 514 291 0 8 chr3 10280054 10280181 -217244397 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10280184 10280316 -217244262 + L2 LINE L2 3149 3271 -1 2733 173 61 34 chr3 10281123 10281764 -217242814 + LTR8A LTR ERV1 1 658 -69 1006 50 0 0 chr3 10281764 10281884 -217242694 - AluY SINE Alu -18 293 174 329 175 0 0 chr3 10281885 10281942 -217242636 + LTR8A LTR ERV1 652 708 -19 2634 102 56 0 chr3 10282469 10282882 -217241696 - MER41A LTR ERV1 -18 536 101 1647 154 145 10 chr3 10282904 10283301 -217241277 - MER61C LTR ERV1 0 434 1 726 96 0 0 chr3 10283301 10283405 -217241173 - MER41B LTR ERV1 -531 104 1 314 325 0 0 chr3 10285232 10285309 -217239269 + L2 LINE L2 3237 3313 0 543 258 94 21 chr3 10285571 10285941 -217238637 - L1ME4a LINE L1 -473 5648 5293 2356 98 0 3 chr3 10287556 10287861 -217236717 - AluSq SINE Alu -9 304 1 231 211 35 0 chr3 10287910 10287967 -217236611 - MIR SINE MIR -114 94 36 239 217 17 17 chr3 10288052 10288112 -217236466 + MIR SINE MIR 111 170 -92 256 278 124 10 chr3 10289309 10289406 -217235172 + L2 LINE L2 3206 3313 0 22 35 0 0 chr3 10290613 10290642 -217233936 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 10290958 10290979 -217233599 + AT_rich Low_complexity Low_complexity 1 21 0 508 286 59 20 chr3 10292139 10292342 -217232236 + MIR SINE MIR 51 261 -1 779 313 94 23 chr3 10292932 10293316 -217231262 + L2 LINE L2 2863 3273 -40 1808 240 93 39 chr3 10293318 10294006 -217230572 - MER50 LTR ERV1 0 734 10 238 333 70 26 chr3 10294389 10294545 -217230033 + MIR3 SINE MIR 16 178 -30 * 437 343 152 49 chr3 10294521 10295416 -217229162 - L3 LINE CR1 -400 1177 191 352 295 195 0 chr3 10295867 10296014 -217228564 - MER5A DNA MER1_type -1 188 13 646 281 30 0 chr3 10296014 10296181 -217228397 - MER5B DNA MER1_type -3 175 4 810 207 39 22 chr3 10296193 10296372 -217228206 - MER5A DNA MER1_type -1 188 7 381 279 25 16 chr3 10296991 10297113 -217227465 - L2 LINE L2 -4 3309 3187 485 273 107 34 chr3 10297786 10297991 -217226587 - MIR SINE MIR -31 231 12 2049 145 35 30 chr3 10298431 10298804 -217225774 + THE1C LTR MaLR 1 375 0 305 197 14 0 chr3 10298899 10298970 -217225608 + (TG)n Simple_repeat Simple_repeat 2 73 0 1041 224 121 35 chr3 10298975 10299315 -217225263 + MLT1A2 LTR MaLR 4 372 -2 849 295 78 12 chr3 10299401 10299610 -217224968 + L1ME LINE L1 5280 5474 -688 1688 175 20 20 chr3 10299610 10299907 -217224671 + AluSx SINE Alu 1 297 -15 849 295 78 12 chr3 10299907 10300196 -217224382 + L1ME LINE L1 5474 5811 -351 308 310 17 43 chr3 10300707 10300861 -217223717 - MIR SINE MIR -48 160 7 4197 120 23 2 chr3 10301170 10301813 -217222765 + L1PA13 LINE L1 5504 6160 -3 346 288 27 9 chr3 10301938 10302049 -217222529 - MER81 DNA DNA -1 113 1 325 149 15 0 chr3 10302083 10302150 -217222428 + MADE1 DNA Mariner 1 68 -12 249 108 0 0 chr3 10302200 10302237 -217222341 + MADE1 DNA Mariner 44 80 0 1845 192 6 6 chr3 10303069 10303423 -217221155 + MLT1A1 LTR MaLR 12 365 0 550 212 73 15 chr3 10303423 10303560 -217221018 - MER5A DNA MER1_type -39 150 6 411 298 87 36 chr3 10304212 10304464 -217220114 - MLT1J LTR MaLR 0 511 247 338 290 42 23 chr3 10305933 10306195 -217218383 + L1MEc LINE L1 2128 2394 -4002 704 190 40 17 chr3 10306196 10306370 -217218208 + MLT1D LTR MaLR 1 178 -327 341 143 0 0 chr3 10306371 10306427 -217218151 - THE1B LTR MaLR -1 363 308 1575 169 115 36 chr3 10306468 10306887 -217217691 + LTR10A LTR ERV1 97 548 -61 1511 138 44 60 chr3 10306899 10307217 -217217361 - THE1B LTR MaLR -51 313 1 855 232 107 12 chr3 10307234 10307553 -217217025 + MLT1D LTR MaLR 157 505 0 230 179 18 0 chr3 10307553 10307609 -217216969 + L1MEc LINE L1 2351 2407 -3808 182 219 24 0 chr3 10308977 10309018 -217215560 + L2 LINE L2 3270 3311 -2 186 229 33 49 chr3 10309102 10309163 -217215415 - MIR3 SINE MIR -1 207 148 466 341 11 37 chr3 10310202 10310475 -217214103 - L3 LINE CR1 -653 924 659 198 206 0 0 chr3 10310684 10310718 -217213860 + L2 LINE L2 3204 3237 -35 6747 102 30 34 chr3 10310869 10311945 -217212633 + MER11C LTR ERVK 1 1071 0 191 309 155 0 chr3 10312743 10312827 -217211751 - MIR SINE MIR -3 259 163 1350 255 60 11 chr3 10312855 10313290 -217211288 + MLT1C LTR MaLR 12 467 0 240 314 22 100 chr3 10313301 10313530 -217211048 + MIR SINE MIR 40 250 -12 229 280 168 19 chr3 10313559 10313666 -217210912 - MIR SINE MIR -108 154 32 187 293 40 27 chr3 10314488 10314563 -217210015 - MIR SINE MIR -111 97 22 207 0 0 0 chr3 10315136 10315159 -217209419 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 209 309 57 24 chr3 10315756 10315879 -217208699 + MIR SINE MIR 20 146 -116 1888 274 20 36 chr3 10316480 10317116 -217207462 + MLT1E2 LTR MaLR 1 626 0 2616 100 17 3 chr3 10317119 10317478 -217207100 + THE1B LTR MaLR 1 364 0 2431 110 0 0 chr3 10318049 10318358 -217206220 - AluSc SINE Alu 0 309 1 666 356 95 11 chr3 10318358 10318821 -217205757 + L2 LINE L2 1982 2483 -831 241 242 16 16 chr3 10319248 10319310 -217205268 + L3 LINE CR1 1515 1576 -1 766 297 90 30 chr3 10319821 10320222 -217204356 - LTR16C LTR ERVL 0 491 67 1914 174 35 30 chr3 10320234 10320782 -217203796 - MLT2A2 LTR ERVL 0 554 1 190 333 144 0 chr3 10322361 10322472 -217202106 - L2 LINE L2 -4 3268 3142 295 276 66 33 chr3 10322514 10322666 -217201912 - MIR SINE MIR -4 258 102 254 343 80 34 chr3 10322757 10322932 -217201646 - L2 LINE L2 -210 3062 2880 417 261 20 7 chr3 10323676 10323873 -217200705 - MLT1H1 LTR MaLR -13 542 300 354 252 0 34 chr3 10323913 10324032 -217200546 - L1MA9 LINE L1 -38 6274 6160 287 254 55 27 chr3 10324047 10324157 -217200421 + L1MA9 LINE L1 5933 6045 -267 388 261 92 7 chr3 10324257 10324399 -217200179 - MLT1H1 LTR MaLR -364 191 38 293 294 0 0 chr3 10324624 10324692 -217199886 - MER58 DNA MER1_type -2350 70 3 585 276 84 28 chr3 10325561 10325775 -217198803 + MIR SINE MIR 36 261 -1 481 272 126 50 chr3 10325907 10326146 -217198432 - MIR SINE MIR 0 262 6 260 67 0 67 chr3 10326589 10326649 -217197929 + (TA)n Simple_repeat Simple_repeat 1 56 0 1039 157 0 0 chr3 10326653 10326806 -217197772 - FRAM SINE Alu -24 152 1 417 303 0 0 chr3 10326958 10327057 -217197521 - L2 LINE L2 0 3272 3174 2359 84 10 0 chr3 10327188 10327485 -217197093 + AluSx SINE Alu 1 300 -12 468 311 39 22 chr3 10327695 10327875 -217196703 - MER5A DNA MER1_type -6 183 1 2358 95 0 3 chr3 10328161 10328457 -217196121 - AluSg SINE Alu -15 295 1 846 116 0 0 chr3 10328502 10328631 -217195947 + (TA)n Simple_repeat Simple_repeat 1 129 0 243 294 158 20 chr3 10329135 10329281 -217195297 + MIR SINE MIR 26 191 -71 2132 193 31 5 chr3 10329444 10329859 -217194719 + MSTB LTR MaLR 1 426 0 678 249 21 21 chr3 10330464 10330653 -217193925 + MER5A DNA MER1_type 1 189 0 243 240 19 67 chr3 10331018 10331122 -217193456 + LTR67 LTR ERVL 442 540 -17 3266 149 22 77 chr3 10331473 10332202 -217192376 - LTR8 LTR ERV1 -2 689 1 4925 50 6 0 chr3 10332514 10333177 -217191401 - L1PA4 LINE L1 -2238 3908 3242 12088 35 1 1 chr3 10333177 10335413 -217189165 + L1PA4 LINE L1 3916 6154 -1 1455 117 40 18 chr3 10335569 10335792 -217188786 - MER30 DNA MER1_type -1 229 2 885 271 23 0 chr3 10335925 10336143 -217188435 - MER58A DNA MER1_type -1 223 1 326 286 121 16 chr3 10337313 10337495 -217187083 + L2 LINE L2 2565 2765 -549 299 331 54 15 chr3 10337499 10337629 -217186949 + MER5B DNA MER1_type 1 135 -43 463 241 25 25 chr3 10337629 10337787 -217186791 - L1MD2 LINE L1 -173 6186 6029 191 361 0 14 chr3 10337839 10337911 -217186667 + MER5A DNA MER1_type 118 188 -1 289 208 57 0 chr3 10338085 10338138 -217186440 + L2 LINE L2 3202 3257 -15 192 97 0 0 chr3 10338174 10338205 -217186373 + (CA)n Simple_repeat Simple_repeat 2 32 0 185 371 29 9 chr3 10338247 10338352 -217186226 - MIR SINE MIR -154 108 2 790 222 5 31 chr3 10339109 10339303 -217185275 - MER5A DNA MER1_type 0 189 1 404 287 19 0 chr3 10339562 10339670 -217184908 + MER5B DNA MER1_type 3 112 -66 191 225 0 0 chr3 10339697 10339737 -217184841 + MIR SINE MIR 159 198 -64 286 253 40 0 chr3 10339756 10339831 -217184747 - MIR SINE MIR -8 254 177 2570 145 61 10 chr3 10339987 10340564 -217184014 - LTR12 LTR ERV1 -226 2212 55 343 219 73 21 chr3 10340574 10340670 -217183908 + MIR SINE MIR 88 188 -74 839 293 11 15 chr3 10340699 10340965 -217183613 + L1MCb LINE L1 1 265 -5780 397 212 126 27 chr3 10340969 10341008 -217183570 - L1 LINE L1 -2486 3660 3626 2169 118 0 17 chr3 10341008 10341305 -217183273 + AluSx SINE Alu 1 292 -20 397 212 126 27 chr3 10341305 10341430 -217183148 - L1 LINE L1 -2520 3626 3495 492 312 95 9 chr3 10341475 10341706 -217182872 + L1MCb LINE L1 312 562 -5483 1279 246 82 29 chr3 10341780 10342292 -217182286 + L1MCb LINE L1 554 1092 -4953 1119 195 36 115 chr3 10342299 10342689 -217181889 + MLT1A1 LTR MaLR 7 365 0 304 216 23 0 chr3 10342689 10342777 -217181801 + L1MCb LINE L1 1090 1179 -5385 1217 142 176 31 chr3 10342777 10343038 -217181540 + AluSg SINE Alu 2 300 0 1557 190 70 24 chr3 10343302 10343675 -217180903 + MLT1B LTR MaLR 1 390 0 1820 150 13 29 chr3 10344010 10344316 -217180262 + AluSx SINE Alu 6 306 -6 2472 257 51 7 chr3 10344374 10345595 -217178983 - L1M4 LINE L1 -1537 4609 3280 2855 174 19 4 chr3 10345930 10346465 -217178113 + MER74A LTR ERVL 16 558 0 647 202 0 0 chr3 10346667 10346776 -217177802 + FLAM_A SINE Alu 15 123 -19 366 23 0 0 chr3 10346992 10347035 -217177543 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 289 116 26 chr3 10347779 10347969 -217176609 + L1MC/D LINE L1 5569 5775 -2033 1453 118 32 0 chr3 10347996 10348216 -217176362 + MER30 DNA MER1_type 2 228 -2 218 82 0 61 chr3 10349626 10349675 -217174903 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 231 314 42 25 chr3 10349840 10349958 -217174620 - L2 LINE L2 -1 3312 3193 193 281 104 30 chr3 10350791 10350926 -217173652 - MIR SINE MIR -43 219 75 795 266 78 33 chr3 10351232 10351723 -217172855 + L2 LINE L2 2794 3313 0 284 163 0 0 chr3 10351899 10351948 -217172630 + MER39 LTR ERV1 1 49 -658 2388 186 48 18 chr3 10352034 10352605 -217171973 + MER39 LTR ERV1 69 707 0 378 315 0 0 chr3 10352894 10353002 -217171576 - MIR SINE MIR -41 221 114 1479 192 20 30 chr3 10353297 10353703 -217170875 + LTR37A LTR ERV1 23 424 -2 313 0 21310 0 chr3 10354534 10354647 -217169931 + L1MC4a LINE L1 7425 5125 -2683 412 291 17 62 chr3 10354647 10354698 -217169880 - MER5B DNA MER1_type -4 174 122 1871 107 4 4 chr3 10354698 10355047 -217169531 + AluSx SINE Alu 30 378 0 412 291 17 62 chr3 10355047 10355171 -217169407 - MER5B DNA MER1_type -56 122 4 313 0 21310 0 chr3 10355171 10355185 -217169393 + L1MC4a LINE L1 5125 4858 -2950 978 169 38 6 chr3 10355185 10355368 -217169210 - MER5A DNA MER1_type 0 189 1 313 0 21310 0 chr3 10355368 10355589 -217168989 + L1MC4a LINE L1 4857 7699 -109 180 260 104 52 chr3 10356290 10356367 -217168211 + L2 LINE L2 2624 2704 -610 856 221 44 58 chr3 10356368 10356594 -217167984 + MER58A DNA MER1_type 1 223 -1 433 264 0 0 chr3 10356615 10356706 -217167872 + MER5A DNA MER1_type 12 102 -87 1612 183 131 3 chr3 10357192 10357575 -217167003 + MSTB1 LTR MaLR 1 432 0 1071 198 102 23 chr3 10357959 10358303 -217166275 - LTR37A LTR ERV1 0 426 56 627 228 21 32 chr3 10359532 10359771 -217164807 - MER39 LTR ERV1 -3 680 422 443 311 24 67 chr3 10359897 10360106 -217164472 - MIR SINE MIR -14 248 49 196 306 32 0 chr3 10360849 10360911 -217163667 - L2 LINE L2 0 3272 3209 265 286 0 14 chr3 10360914 10360984 -217163594 - L2 LINE L2 -4 3309 3241 591 260 86 83 chr3 10361099 10361696 -217162882 + MER77 LTR ERV1 87 601 -4 356 275 118 22 chr3 10361725 10361954 -217162624 - L2 LINE L2 -68 3245 2995 587 236 188 0 chr3 10362293 10362437 -217162141 - MER5A DNA MER1_type 0 189 19 815 215 83 31 chr3 10362497 10362785 -217161793 - MER33 DNA MER1_type -21 303 1 182 208 21 0 chr3 10362976 10363024 -217161554 + (TA)n Simple_repeat Simple_repeat 1 49 0 450 0 0 0 chr3 10363028 10363078 -217161500 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr3 10363598 10363626 -217160952 + AT_rich Low_complexity Low_complexity 1 28 0 412 280 136 19 chr3 10363957 10364171 -217160407 - MIR SINE MIR -15 247 9 294 378 82 30 chr3 10364180 10364447 -217160131 - L3 LINE CR1 -163 1414 1134 1640 257 61 18 chr3 10364762 10365253 -217159325 + MLT1H LTR MaLR 15 526 -23 595 274 30 25 chr3 10366197 10366394 -217158184 + MIR SINE MIR 4 201 -61 246 250 159 11 chr3 10366657 10366745 -217157833 + MIR SINE MIR 39 139 -69 267 105 26 0 chr3 10366967 10367005 -217157573 + L2 LINE L2 3215 3253 -19 397 325 86 0 chr3 10367343 10367506 -217157072 - MIR SINE MIR -62 200 24 339 335 112 6 chr3 10367997 10368167 -217156411 - MIR SINE MIR -12 250 63 1224 121 185 0 chr3 10368169 10368418 -217156160 + L1MA5A LINE L1 5993 6287 -10 270 206 79 0 chr3 10368577 10368640 -217155938 + MER103 DNA DNA 18 85 -81 317 317 65 4 chr3 10369137 10369367 -217155211 + L1ME3A LINE L1 5628 5871 -299 23 54 0 0 chr3 10369496 10369533 -217155045 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 10369715 10369739 -217154839 + AT_rich Low_complexity Low_complexity 1 24 0 1481 174 81 3 chr3 10369915 10370225 -217154353 - MLT1A1 LTR MaLR 0 365 32 24 32 0 0 chr3 10370302 10370333 -217154245 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr3 10371479 10371517 -217153061 + AT_rich Low_complexity Low_complexity 1 38 0 266 221 13 0 chr3 10371668 10371745 -217152833 + L1MDb LINE L1 1271 1348 -5195 365 298 14 106 chr3 10371950 10372242 -217152336 + L1MDb LINE L1 1656 1920 -4620 10314 205 89 25 chr3 10372249 10375338 -217149240 + L1MA4A LINE L1 8 2899 -4046 1741 178 0 24 chr3 10375338 10375667 -217148911 - AluJb SINE Alu 0 322 1 10314 205 89 25 chr3 10375667 10375690 -217148888 + L1MA4A LINE L1 2899 2919 -4026 1771 144 0 50 chr3 10375690 10375989 -217148589 - AluSg SINE Alu -26 284 1 10314 205 89 25 chr3 10375989 10379413 -217145165 + L1MA4A LINE L1 2919 6945 0 800 219 0 12 chr3 10379777 10379937 -217144641 - FRAM SINE Alu -18 158 1 1980 247 93 53 chr3 10380352 10381389 -217143189 + L1MC4 LINE L1 6965 8042 0 1213 269 143 22 chr3 10381670 10382972 -217141606 + L1ME3A LINE L1 4465 5936 -234 2039 120 3 20 chr3 10383191 10383491 -217141087 + AluSx SINE Alu 1 295 -17 363 272 9 26 chr3 10383562 10383797 -217140781 - MLT1I LTR MaLR -6 403 101 277 296 0 96 chr3 10383964 10384079 -217140499 + L2 LINE L2 2919 3022 -250 548 306 35 39 chr3 10385455 10385502 -217139076 - MIR SINE MIR -1 261 215 2215 172 16 21 chr3 10385502 10385932 -217138646 + MSTA LTR MaLR 1 428 0 548 306 35 39 chr3 10385932 10386142 -217138436 - MIR SINE MIR -47 215 5 188 266 127 13 chr3 10386829 10386908 -217137670 - MIR SINE MIR -29 233 146 197 404 0 0 chr3 10386925 10387034 -217137544 - L3 LINE CR1 -731 846 738 343 308 151 6 chr3 10387999 10388171 -217136407 - MIR SINE MIR -10 252 56 188 262 0 0 chr3 10388198 10388240 -217136338 + MER5B DNA MER1_type 12 53 -125 29 28 0 0 chr3 10388374 10388410 -217136168 + AT_rich Low_complexity Low_complexity 1 36 0 396 310 99 34 chr3 10388626 10388764 -217135814 + L1M4 LINE L1 3352 3480 -2666 180 0 0 0 chr3 10388764 10388784 -217135794 + (CA)n Simple_repeat Simple_repeat 2 21 0 396 310 99 34 chr3 10388784 10389037 -217135541 + L1M4 LINE L1 3480 3715 -2431 2170 105 14 3 chr3 10389037 10389332 -217135246 + AluSg SINE Alu 1 298 -12 396 310 99 34 chr3 10389332 10389506 -217135072 + L1M4 LINE L1 3715 3955 -2191 258 156 94 0 chr3 10389700 10389764 -217134814 + FRAM SINE Alu 37 106 -60 614 203 86 49 chr3 10389870 10390079 -217134499 + MLT1C LTR MaLR 8 234 -233 819 136 0 0 chr3 10390129 10390239 -217134339 - FLAM_C SINE Alu -25 118 9 353 283 133 33 chr3 10390489 10390910 -217133668 + L1M4 LINE L1 4382 4844 -1302 271 115 0 19 chr3 10390916 10390968 -217133610 + MER5C DNA MER1_type 74 124 -200 230 200 0 86 chr3 10390992 10391062 -217133516 + MER5C DNA MER1_type 240 303 -21 337 273 35 87 chr3 10391455 10391627 -217132951 - MIR3 SINE MIR -6 202 40 2190 101 7 3 chr3 10392096 10392393 -217132185 - AluSx SINE Alu -14 298 1 289 316 23 18 chr3 10392425 10392596 -217131982 - L1ME4a LINE L1 -220 5901 5730 2186 125 0 13 chr3 10392848 10393159 -217131419 + AluSx SINE Alu 1 307 -5 244 308 64 39 chr3 10393618 10393774 -217130804 + MER5A DNA MER1_type 27 186 -3 447 258 174 13 chr3 10393845 10394000 -217130578 - MER5A DNA MER1_type -1 188 9 305 344 51 62 chr3 10394115 10394310 -217130268 + MIR3 SINE MIR 16 208 0 966 261 111 2 chr3 10395036 10395442 -217129136 + MER113 DNA MER1_type? 9 458 -63 2203 138 0 0 chr3 10395808 10396120 -217128458 + AluSx SINE Alu 1 312 0 361 354 46 11 chr3 10397077 10397252 -217127326 + MIR SINE MIR 21 201 -61 264 277 71 0 chr3 10397972 10398113 -217126465 - L1ME4a LINE L1 -4 6117 5967 23 0 0 0 chr3 10398159 10398182 -217126396 + AT_rich Low_complexity Low_complexity 1 23 0 443 311 60 48 chr3 10399270 10399521 -217125057 + MIR SINE MIR 8 261 -1 192 162 88 88 chr3 10399515 10399583 -217124995 - MIR SINE MIR -111 151 84 * 359 299 68 7 chr3 10399819 10399966 -217124612 - L3 LINE CR1 -794 783 628 22 56 0 0 chr3 10400867 10400903 -217123675 + AT_rich Low_complexity Low_complexity 1 36 0 1216 57 13 0 chr3 10400982 10401140 -217123438 - L1PA4 LINE L1 -1 6154 5995 34 53 0 0 chr3 10401152 10401190 -217123388 + GC_rich Low_complexity Low_complexity 1 38 0 369 300 29 43 chr3 10401739 10401879 -217122699 + L2 LINE L2 2621 2758 -556 194 162 0 27 chr3 10402259 10402296 -217122282 + L2 LINE L2 3183 3218 -95 198 321 75 38 chr3 10402490 10402596 -217121982 - MIR3 SINE MIR -92 116 7 2396 58 3 16 chr3 10402813 10403123 -217121455 + AluY SINE Alu 1 306 -5 243 312 26 26 chr3 10403163 10403240 -217121338 + MER5A DNA MER1_type 4 80 -109 332 274 32 95 chr3 10403741 10403931 -217120647 + MER5B DNA MER1_type 1 178 0 1029 242 43 10 chr3 10405379 10405687 -217118891 + L1ME2 LINE L1 5818 6134 -30 189 374 0 30 chr3 10407439 10407538 -217117040 - L2 LINE L2 -49 3264 3169 945 206 0 63 chr3 10407538 10407761 -217116817 - MER20 DNA MER1_type -1 218 10 387 331 150 30 chr3 10407842 10408254 -217116324 - L2 LINE L2 -200 3113 2647 807 239 109 13 chr3 10409155 10409393 -217115185 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10410418 10410441 -217114137 + (A)n Simple_repeat Simple_repeat 1 23 0 2282 91 0 28 chr3 10410442 10410762 -217113816 + AluY SINE Alu 1 311 0 255 265 41 20 chr3 10411666 10411764 -217112814 + L1MC4 LINE L1 7926 8025 -17 380 253 133 19 chr3 10411900 10412058 -217112520 - MIR SINE MIR 0 262 87 626 263 21 16 chr3 10412116 10412310 -217112268 - L1ME3A LINE L1 -34 6136 5942 700 237 25 30 chr3 10412994 10413230 -217111348 + MER106A DNA MER1_type 1 235 -1 199 361 84 40 chr3 10415454 10415703 -217108875 + L2 LINE L2 2645 2904 -410 215 283 17 0 chr3 10415789 10415849 -217108729 - MIR SINE MIR 0 262 202 886 246 60 30 chr3 10416014 10416348 -217108230 - L1ME1 LINE L1 -5 6161 5818 2064 125 0 3 chr3 10416352 10416639 -217107939 - AluSc SINE Alu -23 286 1 228 35 0 0 chr3 10416639 10416668 -217107910 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 511 291 0 8 chr3 10416675 10416802 -217107776 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10416805 10416937 -217107641 + L2 LINE L2 3149 3271 -1 2920 176 59 34 chr3 10417744 10418386 -217106192 + LTR8A LTR ERV1 1 658 -69 2185 56 42 11 chr3 10418386 10418670 -217105908 - AluYa5 SINE Alu -18 293 1 443 284 40 27 chr3 10418846 10418994 -217105584 - MIR SINE MIR -3 259 110 2222 126 0 0 chr3 10419964 10420265 -217104313 - AluSq SINE Alu -10 303 3 972 137 167 18 chr3 10420272 10420499 -217104079 - L1MA8 LINE L1 0 6291 6031 215 222 146 94 chr3 10421527 10421698 -217102880 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10422811 10422972 -217101606 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10423111 10423467 -217101111 - MLT1B LTR MaLR -11 379 3 392 240 232 0 chr3 10424611 10424736 -217099842 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10425318 10425392 -217099186 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10426028 10426268 -217098310 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10426310 10426496 -217098082 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10427754 10427888 -217096690 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10428746 10428978 -217095600 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10429044 10429153 -217095425 - MER20 DNA MER1_type 0 219 110 219 340 60 50 chr3 10429796 10429896 -217094682 - L2 LINE L2 -184 3088 2988 1687 176 7 26 chr3 10430094 10430400 -217094178 + AluJo SINE Alu 1 300 -12 796 227 77 0 chr3 10430883 10431077 -217093501 - MER3 DNA MER1_type 0 209 1 2485 48 0 58 chr3 10431246 10431576 -217093002 - AluY SINE Alu 0 311 1 361 335 18 41 chr3 10432396 10432617 -217091961 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10432900 10433070 -217091508 - AluSg/x SINE Alu -7 305 136 505 237 15 0 chr3 10434343 10434474 -217090104 + MER94 DNA DNA 2 134 0 295 273 105 35 chr3 10434626 10434769 -217089809 + MIR SINE MIR 29 181 -81 253 297 73 70 chr3 10435117 10435390 -217089188 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10435965 10436085 -217088493 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10436751 10436842 -217087736 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10437647 10437700 -217086878 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10438106 10438263 -217086315 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10438395 10438711 -217085867 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10438735 10438765 -217085813 + (CA)n Simple_repeat Simple_repeat 1 30 0 307 288 72 85 chr3 10439354 10439590 -217084988 + L1MC4a LINE L1 5815 6047 -1761 1228 227 91 50 chr3 10440033 10440452 -217084126 + MER63B DNA MER1_type 1 436 0 194 338 93 0 chr3 10440558 10440697 -217083881 - MIR SINE MIR 0 262 111 2055 206 26 14 chr3 10441009 10441436 -217083142 - MSTB1 LTR MaLR 0 432 1 592 256 6 36 chr3 10441814 10441982 -217082596 - MER5B DNA MER1_type -10 168 6 2207 76 0 13 chr3 10442015 10442316 -217082262 + AluY SINE Alu 9 305 -6 28 29 0 0 chr3 10442493 10442528 -217082050 + AT_rich Low_complexity Low_complexity 1 35 0 1141 68 7 0 chr3 10442816 10442964 -217081614 + L1PA7 LINE L1 5999 6147 -7 185 324 28 39 chr3 10443566 10443682 -217080896 + MIR SINE MIR 7 89 -119 896 250 43 20 chr3 10444041 10444341 -217080237 + LTR16A LTR ERVL 95 401 -49 467 284 130 17 chr3 10444659 10445068 -217079510 - L1MC4 LINE L1 0 8042 7588 424 203 122 14 chr3 10445070 10445114 -217079464 - L1MA10 LINE L1 -2 6332 6289 2570 237 66 22 chr3 10445114 10445661 -217078917 - L1ME1 LINE L1 -44 6122 5601 2495 65 0 0 chr3 10445661 10445968 -217078610 - AluY SINE Alu -4 307 1 2570 237 66 22 chr3 10445968 10447040 -217077538 - L1ME1 LINE L1 -565 5601 4428 538 326 19 25 chr3 10447033 10447355 -217077223 - L1MC4 LINE L1 -452 7590 7271 * 186 231 0 0 chr3 10447960 10447999 -217076579 - L2 LINE L2 -17 3296 3258 1070 141 9 61 chr3 10452013 10452226 -217072352 - MLT2A2 LTR ERVL -251 202 1 216 289 144 10 chr3 10452226 10452330 -217072248 + MIR SINE MIR 90 207 -55 438 243 21 36 chr3 10453563 10453703 -217070875 - L2 LINE L2 -1 3312 3175 292 319 44 0 chr3 10455352 10455465 -217069113 + MIR SINE MIR 49 166 -96 23 0 0 0 chr3 10455608 10455631 -217068947 + AT_rich Low_complexity Low_complexity 1 23 0 59 88 0 0 chr3 10456173 10456275 -217068303 + AT_rich Low_complexity Low_complexity 1 102 0 2561 43 0 0 chr3 10456275 10456597 -217067981 - L1PA4 LINE L1 -134 6021 5700 719 34 0 0 chr3 10456597 10456685 -217067893 + L1PA4 LINE L1 5618 5705 -450 380 285 70 55 chr3 10457678 10457878 -217066700 - MER63A DNA MER1_type -3 207 5 252 0 0 0 chr3 10458053 10458081 -217066497 + (CAT)n Simple_repeat Simple_repeat 2 29 0 296 289 125 13 chr3 10458308 10458460 -217066118 + MIR SINE MIR 72 240 -22 241 291 9 55 chr3 10458663 10458773 -217065805 - L2 LINE L2 -873 2441 2337 684 216 30 82 chr3 10459166 10459397 -217065181 - MER58A DNA MER1_type 0 224 6 217 319 80 26 chr3 10459419 10459532 -217065046 + L2 LINE L2 3189 3307 -6 297 172 0 0 chr3 10461038 10461102 -217063476 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 248 315 0 9 chr3 10461297 10461405 -217063173 - MER103 DNA DNA -48 118 12 314 209 0 30 chr3 10462422 10462489 -217062089 + L3 LINE CR1 1227 1291 -286 347 263 74 0 chr3 10463285 10463380 -217061198 + L2 LINE L2 3195 3296 -17 236 186 17 0 chr3 10463462 10463521 -217061057 + (TA)n Simple_repeat Simple_repeat 1 60 0 3467 78 13 0 chr3 10464027 10464474 -217060104 + MLT2A2 LTR ERVL 1 453 0 527 189 184 31 chr3 10464486 10464601 -217059977 + L1MA9 LINE L1 6019 6115 -197 2229 105 36 33 chr3 10464601 10464964 -217059614 - THE1B LTR MaLR 0 364 1 527 189 184 31 chr3 10464964 10465076 -217059502 + L1MA9 LINE L1 6115 6281 -31 4319 63 2 4 chr3 10465278 10465835 -217058743 + L1PA8A LINE L1 5563 6118 -13 432 234 98 103 chr3 10467183 10467589 -217056989 - LTR33A LTR ERVL 0 523 120 2049 139 0 26 chr3 10468358 10468660 -217055918 - AluSx SINE Alu -18 294 1 231 246 78 70 chr3 10469119 10469161 -217055417 + MIR SINE MIR 118 158 -104 1995 178 78 10 chr3 10469161 10469560 -217055018 + MSTB LTR MaLR 1 426 0 231 246 78 70 chr3 10469560 10469659 -217054919 + MIR SINE MIR 158 260 -2 189 371 73 8 chr3 10470048 10470172 -217054406 + MIR SINE MIR 118 249 -13 2289 102 0 41 chr3 10470207 10470522 -217054056 + AluSq SINE Alu 1 302 -11 203 171 0 0 chr3 10471006 10471047 -217053531 + (TA)n Simple_repeat Simple_repeat 1 41 0 232 203 109 70 chr3 10471111 10471239 -217053339 + MER113 DNA MER1_type? 3 135 -386 32 57 0 0 chr3 10471239 10471292 -217053286 + AT_rich Low_complexity Low_complexity 1 53 0 279 333 85 23 chr3 10471593 10471722 -217052856 + MIR3 SINE MIR 10 146 -62 30 0 0 0 chr3 10472516 10472546 -217052032 + AT_rich Low_complexity Low_complexity 1 30 0 2114 108 3 0 chr3 10472866 10473153 -217051425 - AluSq SINE Alu -25 288 1 346 202 36 0 chr3 10473476 10473560 -217051018 - MLT1I LTR MaLR -4 405 319 319 309 52 58 chr3 10473843 10474134 -217050444 + MLT1K LTR MaLR 138 426 -162 184 348 65 39 chr3 10474421 10474576 -217050002 + L2 LINE L2 2820 2978 -294 275 288 45 9 chr3 10475477 10475588 -217048990 + LTR67 LTR ERVL 409 523 -34 368 302 0 35 chr3 10476946 10477062 -217047516 + L2 LINE L2 3202 3313 0 1366 183 51 36 chr3 10477097 10477453 -217047125 + MLT1B LTR MaLR 30 390 0 271 296 84 0 chr3 10477455 10477597 -217046981 + L2 LINE L2 2749 2902 -412 220 318 83 30 chr3 10477705 10477837 -217046741 + L2 LINE L2 3134 3272 0 582 311 57 38 chr3 10477929 10478062 -217046516 + L1ME3A LINE L1 5465 5594 -576 879 210 23 27 chr3 10478062 10478281 -217046297 + MER20 DNA MER1_type 2 219 0 582 311 57 38 chr3 10478281 10478568 -217046010 + L1ME3A LINE L1 5594 5893 -277 1595 236 141 19 chr3 10479559 10480147 -217044431 + L1MC4 LINE L1 6485 7144 -898 341 206 0 0 chr3 10480147 10480220 -217044358 + L1MC4a LINE L1 7137 7209 -599 1478 211 17 34 chr3 10480224 10480464 -217044114 - MER2 DNA MER2_type 0 345 111 1147 122 117 0 chr3 10480464 10480669 -217043909 + MER30 DNA MER1_type 1 229 -1 1478 211 17 34 chr3 10480669 10480779 -217043799 - MER2 DNA MER2_type -234 111 1 1477 223 132 29 chr3 10480779 10481326 -217043252 + L1MC4 LINE L1 7295 7897 -145 1687 167 60 33 chr3 10481549 10481914 -217042664 - THE1C LTR MaLR 0 375 1 1817 183 6 10 chr3 10482371 10482683 -217041895 + AluSx SINE Alu 1 311 -1 487 336 82 66 chr3 10482712 10483152 -217041426 + L1M2 LINE L1 1 447 -6402 209 83 28 0 chr3 10483810 10483846 -217040732 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 12090 223 37 14 chr3 10483948 10487764 -217036814 + L1PA15 LINE L1 1664 5567 -1282 4428 128 30 3 chr3 10487765 10488491 -217036087 + L1PA15 LINE L1 6116 6861 -7 23 0 0 0 chr3 10488586 10488609 -217035969 + AT_rich Low_complexity Low_complexity 1 23 0 929 199 10 0 chr3 10488711 10488912 -217035666 + L1PB1 LINE L1 2 204 -6659 * 11724 184 88 13 chr3 10488885 10493028 -217031550 + L1PB1 LINE L1 601 5337 -1530 2298 122 0 0 chr3 10493028 10493340 -217031238 + AluSx SINE Alu 1 312 0 11724 184 88 13 chr3 10493340 10494994 -217029584 + L1PB1 LINE L1 5337 6865 -2 186 125 0 0 chr3 10495296 10495307 -217029271 + (TAA)n Simple_repeat Simple_repeat 1 11 -21 2123 78 7 3 chr3 10495307 10495590 -217028988 + AluY SINE Alu 1 284 -27 186 125 0 0 chr3 10495590 10495610 -217028968 + (TAA)n Simple_repeat Simple_repeat 10 32 0 260 310 89 6 chr3 10495649 10495807 -217028771 - MIR SINE MIR -50 212 42 26 64 0 0 chr3 10495807 10495854 -217028724 + AT_rich Low_complexity Low_complexity 1 47 0 239 346 144 19 chr3 10496595 10496699 -217027879 + L2 LINE L2 3175 3291 -22 279 351 0 0 chr3 10497612 10497689 -217026889 - L2 LINE L2 -2 3311 3235 22637 72 15 1 chr3 10497705 10501508 -217023070 - L1PA6 LINE L1 -1 6153 2305 181 57 57 0 chr3 10501508 10501543 -217023035 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 22637 72 15 1 chr3 10501543 10501609 -217022969 - L1PA6 LINE L1 -3849 2305 2241 509 316 60 23 chr3 10501632 10501847 -217022731 + MIR SINE MIR 33 255 -7 1449 312 30 11 chr3 10502025 10502582 -217021996 + L1M1 LINE L1 19 586 -6623 298 155 121 0 chr3 10502585 10502643 -217021935 + Charlie3 DNA MER1_type 6 70 -2640 * 1335 162 57 142 chr3 10502629 10502981 -217021597 + Charlie3 DNA MER1_type 17 2711 0 322 248 77 43 chr3 10503050 10503167 -217021411 + L1M1 LINE L1 677 797 -6412 3074 234 70 2 chr3 10503319 10504147 -217020431 + L1M1 LINE L1 1439 2322 -4887 4922 204 26 11 chr3 10504153 10505395 -217019183 + L1M1 LINE L1 5106 6366 -842 1653 144 81 17 chr3 10505411 10505757 -217018821 + L1M1 LINE L1 6448 6815 -550 1210 56 12 0 chr3 10505782 10505943 -217018635 - L1P3 LINE L1 -459 5713 5551 * 27532 119 16 72 chr3 10505940 10508074 -217016504 - L1P3 LINE L1 -1007 5139 2887 2117 120 0 3 chr3 10508074 10508365 -217016213 + AluY SINE Alu 5 294 -17 27532 119 16 72 chr3 10508365 10511661 -217012917 - L1P3 LINE L1 -3259 2887 12 255 252 52 17 chr3 10511792 10511907 -217012671 + L1MC4 LINE L1 7924 8042 0 375 316 64 23 chr3 10513168 10513386 -217011192 - MIR SINE MIR -34 228 2 180 0 0 0 chr3 10514465 10514485 -217010093 + (A)n Simple_repeat Simple_repeat 1 20 0 336 274 113 8 chr3 10514530 10514654 -217009924 - MIR3 SINE MIR -50 158 22 203 179 0 0 chr3 10514983 10515022 -217009556 + A-rich Low_complexity Low_complexity 4 42 0 460 183 208 0 chr3 10515566 10515686 -217008892 - MIR SINE MIR -90 172 28 369 285 73 36 chr3 10516244 10516409 -217008169 - MIR SINE MIR -71 191 21 2208 204 33 70 chr3 10516732 10517364 -217007214 + LTR9 LTR ERV1 1 609 -3 606 242 35 37 chr3 10517648 10517842 -217006736 + MIR SINE MIR 59 254 -8 1786 254 33 80 chr3 10518201 10518964 -217005614 + MER21B LTR ERV1 13 739 -124 222 372 68 7 chr3 10519352 10519500 -217005078 + MIR3 SINE MIR 25 181 -27 * 331 328 69 17 chr3 10519481 10519655 -217004923 + MER5A DNA MER1_type 7 189 0 3548 141 77 10 chr3 10519798 10520506 -217004072 + LTR1B LTR ERV1 1 785 0 407 262 299 0 chr3 10521560 10521804 -217002774 + MER5C DNA MER1_type 2 318 -6 1434 208 45 20 chr3 10523874 10524273 -217000305 + LTR37B LTR ERV1 60 468 0 218 56 28 0 chr3 10524445 10524481 -217000097 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 230 290 221 0 chr3 10524519 10524650 -216999928 + MIR3 SINE MIR 33 192 -16 21 0 0 0 chr3 10525110 10525131 -216999447 + AT_rich Low_complexity Low_complexity 1 21 0 593 263 41 12 chr3 10526436 10526607 -216997971 - MIR SINE MIR -3 259 84 231 312 0 0 chr3 10526895 10526972 -216997606 - MLT1I LTR MaLR -254 155 79 2284 110 3 3 chr3 10527202 10527503 -216997075 - AluSc SINE Alu -8 301 1 288 188 27 98 chr3 10527694 10527806 -216996772 - Charlie8 DNA MER1_type -2237 180 77 2099 116 0 14 chr3 10527910 10528204 -216996374 - AluSg SINE Alu -20 290 1 228 211 18 18 chr3 10529049 10529106 -216995472 + LTR40b LTR ERVL 329 385 -77 870 244 73 0 chr3 10529133 10529367 -216995211 - MER5C DNA MER1_type -73 251 1 203 250 40 40 chr3 10529426 10529502 -216995076 + MIR SINE MIR 187 262 0 1947 134 42 0 chr3 10531220 10531504 -216993074 + AluSx SINE Alu 3 298 -14 947 209 134 11 chr3 10532476 10532753 -216991825 - MLT1D LTR MaLR -29 476 166 1326 164 108 16 chr3 10532753 10533268 -216991310 + LTR36 LTR ERV1 1 611 0 843 194 6 12 chr3 10533268 10533438 -216991140 - MLT1D LTR MaLR -336 169 1 905 110 0 14 chr3 10533454 10533600 -216990978 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1411 256 152 16 chr3 10535118 10535626 -216988952 + MLT1G LTR MaLR 14 590 0 206 265 20 0 chr3 10536257 10536306 -216988272 + L2 LINE L2 2708 2757 -557 269 244 277 38 chr3 10536399 10536612 -216987966 - L2 LINE L2 -16 3297 3034 22 0 0 0 chr3 10536692 10536714 -216987864 + AT_rich Low_complexity Low_complexity 1 22 0 382 265 54 0 chr3 10537002 10537149 -216987429 - L1MC5 LINE L1 -546 7415 7261 289 308 5 56 chr3 10537275 10537364 -216987214 - L1MC4 LINE L1 -743 7299 7224 1958 154 3 10 chr3 10537364 10537675 -216986903 - AluSc SINE Alu 0 309 1 289 308 5 56 chr3 10537675 10537780 -216986798 - L1MC4 LINE L1 -818 7224 7115 1616 141 8 0 chr3 10537930 10538171 -216986407 - AluY SINE Alu 0 311 69 522 326 54 15 chr3 10538218 10538246 -216986332 - L1MC4a LINE L1 -911 6897 6872 1132 172 84 116 chr3 10538246 10538711 -216985867 - LTR7 LTR ERV1 0 450 1 522 326 54 15 chr3 10538711 10539014 -216985564 - L1MC4a LINE L1 -936 6872 6633 34407 94 16 14 chr3 10539064 10542767 -216981811 + L1PA6 LINE L1 11 3733 -2421 441 0 0 0 chr3 10542767 10542816 -216981762 + (CA)n Simple_repeat Simple_repeat 2 50 0 34407 94 16 14 chr3 10542816 10545244 -216979334 + L1PA6 LINE L1 3733 6154 0 338 288 86 74 chr3 10545306 10545549 -216979029 - L1MC4a LINE L1 -1283 6525 6280 381 250 62 81 chr3 10545992 10546119 -216978459 - L1ME1 LINE L1 -315 5851 5723 303 71 0 0 chr3 10546119 10546161 -216978417 + (TG)n Simple_repeat Simple_repeat 2 43 0 381 250 62 81 chr3 10546161 10546305 -216978273 - L1ME1 LINE L1 -443 5723 5585 5422 86 33 10 chr3 10546320 10546546 -216978032 + L1PA10 LINE L1 5332 5551 -617 3709 199 24 75 chr3 10546546 10547568 -216977010 + LTR5 LTR ERVK 1 969 0 5422 86 33 10 chr3 10547568 10548159 -216976419 + L1PA10 LINE L1 5551 6168 0 260 250 114 23 chr3 10548177 10548265 -216976313 - L1ME1 LINE L1 -2471 5571 5476 1326 223 59 48 chr3 10548288 10548819 -216975759 - L1ME1 LINE L1 -105 6061 5593 288 314 29 6 chr3 10548818 10548990 -216975588 - L1MEc LINE L1 -5411 985 810 * 547 206 0 87 chr3 10548997 10549062 -216975516 - FLAM_A SINE Alu -187 115 65 1412 229 17 7 chr3 10549062 10549359 -216975219 + AluJb SINE Alu 1 300 -12 547 206 0 87 chr3 10549359 10549419 -216975159 - FLAM_A SINE Alu -237 65 1 598 287 84 28 chr3 10549427 10550077 -216974501 - L1MEc LINE L1 -5634 762 36 900 332 115 37 chr3 10550509 10551316 -216973262 - L2 LINE L2 -477 2837 1968 259 298 96 56 chr3 10551701 10551899 -216972679 - MIR SINE MIR -29 233 28 207 258 25 126 chr3 10552388 10552550 -216972028 - MIR SINE MIR -56 152 5 343 320 33 8 chr3 10553241 10553363 -216971215 + MIR SINE MIR 27 151 -57 924 238 111 23 chr3 10553437 10553907 -216970671 + L1M4 LINE L1 2211 2721 -3425 328 272 121 91 chr3 10553921 10554129 -216970449 + L1M4c LINE L1 1349 1572 -4812 1915 129 44 35 chr3 10554129 10554469 -216970109 + MER61A LTR ERV1 1 343 0 328 272 121 91 chr3 10554469 10554591 -216969987 + L1M4c LINE L1 1572 1689 -4695 348 330 75 5 chr3 10554988 10555188 -216969390 + L1M4c LINE L1 2470 2683 -3699 245 360 7 14 chr3 10556426 10556565 -216968013 - L3 LINE CR1 -191 1386 1249 444 37 0 0 chr3 10556701 10556755 -216967823 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 222 240 70 50 chr3 10557178 10557278 -216967300 + MER5B DNA MER1_type 76 177 -1 301 244 70 23 chr3 10557472 10557558 -216967020 + MER5A DNA MER1_type 14 103 -86 1851 189 83 41 chr3 10557627 10558087 -216966491 - MLT2B3 LTR ERVL -1 553 75 362 104 60 0 chr3 10558184 10558251 -216966327 - MLT2B3 LTR ERVL -483 71 1 283 296 93 9 chr3 10558570 10558678 -216965900 + MIR SINE MIR 94 210 -52 646 329 40 4 chr3 10559142 10559370 -216965208 - MIR SINE MIR -7 255 20 236 360 67 0 chr3 10559390 10559465 -216965113 - L2 LINE L2 -50 3222 3143 239 284 103 17 chr3 10560932 10561048 -216963530 - MER117 DNA MER1_type -54 143 18 539 314 114 36 chr3 10561326 10561528 -216963050 - L2 LINE L2 -503 2811 2626 1210 196 38 92 chr3 10561528 10561920 -216962658 - MLT1A2 LTR MaLR -3 371 1 539 314 114 36 chr3 10561920 10562102 -216962476 - L2 LINE L2 -688 2626 2397 391 283 38 38 chr3 10562232 10562391 -216962187 - MIR SINE MIR 0 262 104 455 304 84 56 chr3 10562432 10562791 -216961787 + MLT1I LTR MaLR 40 408 -1 3348 121 26 31 chr3 10563577 10564163 -216960415 - LTR1 LTR ERV1 0 785 203 1191 138 11 46 chr3 10564157 10564418 -216960160 - LTR1 LTR ERV1 -533 252 1 * 305 308 15 23 chr3 10564606 10564736 -216959842 - MLT1K LTR MaLR -18 570 442 216 0 0 0 chr3 10564880 10564904 -216959674 + (A)n Simple_repeat Simple_repeat 1 24 0 492 317 114 51 chr3 10565347 10565945 -216958633 - L2 LINE L2 -15 3257 2629 237 65 0 0 chr3 10566228 10566259 -216958319 + (T)n Simple_repeat Simple_repeat 1 31 0 342 327 154 3 chr3 10568121 10568348 -216956230 - MIR SINE MIR -1 261 8 279 0 0 0 chr3 10569368 10569399 -216955179 + (CA)n Simple_repeat Simple_repeat 2 32 0 221 57 29 0 chr3 10569399 10569434 -216955144 + (GA)n Simple_repeat Simple_repeat 1 36 0 506 208 28 56 chr3 10569551 10569695 -216954883 + MLT1J LTR MaLR 3 142 -369 867 252 100 29 chr3 10569809 10570150 -216954428 + LTR16C LTR ERVL 127 491 0 580 294 65 26 chr3 10570321 10570552 -216954026 + MIR SINE MIR 17 256 -6 225 257 40 14 chr3 10571075 10571149 -216953429 + L2 LINE L2 2686 2761 -553 241 390 48 7 chr3 10571271 10571417 -216953161 + L2 LINE L2 2922 3073 -199 529 274 37 0 chr3 10571835 10571999 -216952579 + MIR SINE MIR 93 262 0 302 391 36 0 chr3 10572209 10572319 -216952259 + L2 LINE L2 3147 3260 -12 296 146 0 36 chr3 10572626 10572681 -216951897 + L2 LINE L2 3257 3309 -4 1796 172 3 25 chr3 10572836 10573187 -216951391 - AluJo SINE Alu 0 344 1 183 328 246 0 chr3 10573831 10573953 -216950625 + MIR SINE MIR 40 191 -71 226 314 64 64 chr3 10574200 10574356 -216950222 - MIR SINE MIR -87 175 20 297 253 0 38 chr3 10574427 10574506 -216950072 - MIR SINE MIR -61 201 126 339 259 44 15 chr3 10574588 10574723 -216949855 - MLT1K LTR MaLR -76 512 374 235 262 0 16 chr3 10576747 10576808 -216947770 + MLT1K LTR MaLR 187 246 -342 369 324 3 40 chr3 10578513 10578831 -216945747 + GA-rich Low_complexity Low_complexity 1 306 0 805 264 116 60 chr3 10579587 10579721 -216944857 + LTR16A1 LTR ERVL 3 128 -329 1976 147 3 26 chr3 10579721 10580027 -216944551 + AluSx SINE Alu 3 301 -11 805 264 116 60 chr3 10580027 10580323 -216944255 + LTR16A1 LTR ERVL 128 457 0 3854 167 34 47 chr3 10581220 10582015 -216942563 + LTR1 LTR ERV1 1 785 0 198 258 8 142 chr3 10582029 10582149 -216942429 + L2 LINE L2 3168 3271 -1 464 179 42 32 chr3 10582502 10582597 -216941981 + MER5A DNA MER1_type 4 99 -90 414 306 127 44 chr3 10582713 10582953 -216941625 + LTR16C LTR ERVL 72 357 -134 2849 228 80 18 chr3 10582953 10583731 -216940847 - LTR1B LTR ERV1 0 826 1 414 306 127 44 chr3 10583731 10583876 -216940702 + LTR16C LTR ERVL 357 489 -2 370 310 62 0 chr3 10583975 10584120 -216940458 + MER63A DNA MER1_type 57 210 0 987 307 63 65 chr3 10584276 10584654 -216939924 - L2 LINE L2 0 3272 2895 2150 137 0 3 chr3 10584654 10584967 -216939611 + AluSq SINE Alu 1 312 -1 987 307 63 65 chr3 10584967 10585412 -216939166 - L2 LINE L2 -377 2895 2432 207 0 0 0 chr3 10585437 10585460 -216939118 + (T)n Simple_repeat Simple_repeat 1 23 0 982 148 0 67 chr3 10585782 10585992 -216938586 + MER44D DNA MER2_type 29 494 -115 5998 98 9 7 chr3 10585996 10586889 -216937689 - L1PA10 LINE L1 -12 6156 5262 353 328 19 58 chr3 10587438 10587627 -216936951 - MIR3 SINE MIR -36 172 27 239 257 216 16 chr3 10588083 10588231 -216936347 + MIR SINE MIR 13 184 -55 380 358 57 0 chr3 10588245 10588368 -216936210 - L2 LINE L2 -6 3266 3137 2214 104 10 3 chr3 10588434 10588731 -216935847 + AluSx SINE Alu 1 299 -13 336 318 36 26 chr3 10589863 10590055 -216934523 + MLT1K LTR MaLR 395 588 0 1806 142 48 43 chr3 10590058 10590431 -216934147 + THE1C LTR MaLR 1 375 0 420 185 11 0 chr3 10590529 10590621 -216933957 - MER58B DNA MER1_type -9 332 240 2545 164 31 7 chr3 10592302 10592752 -216931826 - LOR1b LTR ERV1 0 461 1 227 266 0 0 chr3 10593271 10593335 -216931243 - MER117 DNA MER1_type -133 64 1 232 407 0 0 chr3 10593548 10593634 -216930944 + L2 LINE L2 2939 3024 -248 197 279 115 0 chr3 10594318 10594379 -216930199 + MIR SINE MIR 81 148 -114 514 266 41 35 chr3 10594508 10594677 -216929901 - MIR SINE MIR -58 204 35 617 267 46 63 chr3 10594885 10595170 -216929408 + MLT1J LTR MaLR 232 511 0 203 313 12 12 chr3 10595600 10595683 -216928895 - MIR SINE MIR -16 246 164 314 308 163 0 chr3 10596304 10596476 -216928102 + LTR33 LTR ERVL 1 200 -321 282 324 21 7 chr3 10596614 10596756 -216927822 + LTR33 LTR ERVL 374 517 -4 230 266 16 0 chr3 10597354 10597418 -216927160 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 1007 149 0 6 chr3 10597587 10597768 -216926810 + L1 LINE L1 3389 3568 -2578 13389 144 36 20 chr3 10598893 10601273 -216923305 + Tigger1 DNA MER2_type 1 2418 0 2302 116 0 0 chr3 10601317 10601619 -216922959 - AluSx SINE Alu -10 302 1 191 122 0 24 chr3 10601805 10601846 -216922732 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10602345 10602557 -216922021 - MER58A DNA MER1_type 0 224 1 2371 188 47 2 chr3 10602753 10603200 -216921378 + LTR24 LTR ERV1 1 467 0 497 222 22 89 chr3 10603264 10603444 -216921134 + MIR3 SINE MIR 20 187 -21 201 348 111 39 chr3 10603770 10603977 -216920601 + L3 LINE CR1 1356 1577 0 312 177 0 152 chr3 10604133 10604212 -216920366 + L2 LINE L2 3246 3312 -1 266 307 94 19 chr3 10605894 10606106 -216918472 + L2 LINE L2 2749 2976 -338 327 188 38 38 chr3 10606261 10606421 -216918157 + (TTGTG)n Simple_repeat Simple_repeat 1 160 0 191 122 0 24 chr3 10606926 10606967 -216917611 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10607473 10607685 -216916893 - MER58A DNA MER1_type 0 224 1 1327 196 62 9 chr3 10607881 10608202 -216916376 + LTR24 LTR ERV1 1 338 -129 6029 38 0 1 chr3 10608571 10609340 -216915238 - L1P LINE L1 -1931 4215 3448 8990 39 1 1 chr3 10609342 10610537 -216914041 + L1P LINE L1 2251 3445 -2701 * 9612 63 10 2 chr3 10610531 10611881 -216912697 + L1P LINE L1 3996 5356 -790 1156 74 27 3 chr3 10611876 10612062 -216912516 - L1P2 LINE L1 -623 5531 5343 * 2222 184 45 45 chr3 10612982 10613492 -216911086 + MER67D LTR ERV1 1 510 -4 952 219 40 48 chr3 10613570 10613821 -216910757 + L2 LINE L2 2446 2694 -620 703 249 16 21 chr3 10613908 10614097 -216910481 + MER5A DNA MER1_type 1 188 -1 579 301 87 51 chr3 10614111 10614446 -216910132 + L2 LINE L2 2953 3299 -14 433 253 60 86 chr3 10614483 10614740 -216909838 - MER113 DNA MER1_type? -182 339 92 2146 108 0 14 chr3 10614740 10615027 -216909551 + AluSg SINE Alu 1 283 -27 433 253 60 86 chr3 10615027 10615117 -216909461 - MER113 DNA MER1_type? -429 92 1 584 341 85 23 chr3 10615976 10616413 -216908165 + LTR16C LTR ERVL 2 465 -26 887 136 31 0 chr3 10617504 10617666 -216906912 - L1MC1 LINE L1 -223 6110 5944 290 322 35 9 chr3 10617667 10617782 -216906796 - MIR SINE MIR -98 164 47 212 271 0 0 chr3 10618047 10618106 -216906472 - L2 LINE L2 0 3272 3214 418 260 43 117 chr3 10618795 10618903 -216905675 - MIR SINE MIR -12 250 166 1583 206 39 0 chr3 10618903 10619185 -216905393 + AluJb SINE Alu 1 293 -19 418 260 43 117 chr3 10619185 10619307 -216905271 - MIR SINE MIR -96 166 37 504 298 36 58 chr3 10619372 10619597 -216904981 + L2 LINE L2 3053 3272 0 721 214 71 0 chr3 10619697 10619851 -216904727 + MER63B DNA MER1_type 1 165 -271 197 306 153 0 chr3 10619905 10620003 -216904575 + MIR3 SINE MIR 91 203 -5 198 404 28 0 chr3 10620937 10621046 -216903532 - L2 LINE L2 -7 3265 3154 763 254 105 13 chr3 10621143 10621371 -216903207 + MIR SINE MIR 14 262 0 1703 141 45 14 chr3 10622459 10622749 -216901829 + AluSq SINE Alu 1 299 -14 1922 100 4 0 chr3 10623371 10623620 -216900958 - AluSp SINE Alu -17 296 47 2108 142 9 0 chr3 10624435 10624780 -216899798 - L1PB1 LINE L1 -8 6143 5796 342 131 0 0 chr3 10624790 10624904 -216899674 + (TA)n Simple_repeat Simple_repeat 1 114 0 343 298 9 18 chr3 10624905 10625019 -216899559 + L1MC4 LINE L1 6616 6728 -1314 12698 199 59 11 chr3 10625025 10631070 -216893508 - L1P5 LINE L1 -361 6506 16 643 304 143 36 chr3 10631318 10631845 -216892733 + L2 LINE L2 2723 3312 -1 298 328 23 46 chr3 10631859 10632033 -216892545 - MIR SINE MIR 0 262 93 2199 157 67 10 chr3 10632119 10632520 -216892058 + MSTB LTR MaLR 1 424 -2 181 339 53 53 chr3 10633688 10633859 -216890719 - L2 LINE L2 0 3272 3102 182 350 82 25 chr3 10634356 10634710 -216889868 - L2 LINE L2 -897 2417 2044 440 293 127 29 chr3 10635246 10635451 -216889127 - L2 LINE L2 0 3313 3089 1635 192 3 23 chr3 10635996 10636298 -216888280 - AluJo SINE Alu -16 296 1 12918 148 25 42 chr3 10636885 10637229 -216887349 + Tigger1 DNA MER2_type 1 349 -2069 180 0 0 0 chr3 10637229 10637249 -216887329 + (TC)n Simple_repeat Simple_repeat 1 20 0 12918 148 25 42 chr3 10637249 10637927 -216886651 + Tigger1 DNA MER2_type 349 1037 -1381 2233 114 3 0 chr3 10637927 10638235 -216886343 + AluSq SINE Alu 1 309 -4 12918 148 25 42 chr3 10638235 10638680 -216885898 + Tigger1 DNA MER2_type 1037 1488 -930 2566 33 0 3 chr3 10638680 10638981 -216885597 - AluY SINE Alu -11 300 1 12918 148 25 42 chr3 10638981 10639970 -216884608 + Tigger1 DNA MER2_type 1488 2418 0 509 214 209 8 chr3 10639984 10640218 -216884360 + MER113 DNA MER1_type? 121 401 -120 904 312 74 17 chr3 10640264 10640671 -216883907 + LTR16A LTR ERVL 16 445 -5 1590 119 0 21 chr3 10640680 10640916 -216883662 - AluSg/x SINE Alu -3 307 77 1030 39 0 0 chr3 10640998 10641127 -216883451 + L1PA5 LINE L1 6026 6154 0 1091 181 50 23 chr3 10641355 10641659 -216882919 - MER33 DNA MER1_type -22 302 1 591 317 116 0 chr3 10642260 10642484 -216882094 - MIR SINE MIR -3 259 10 216 194 0 0 chr3 10642652 10642688 -216881890 - MIR SINE MIR -59 149 114 273 185 0 0 chr3 10643593 10643647 -216880931 + MER116 DNA Mariner 7 60 -20 195 100 0 0 chr3 10643880 10643910 -216880668 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5098 251 54 25 chr3 10644301 10645064 -216879514 + L1MB7 LINE L1 19 758 -5886 342 0 0 0 chr3 10645064 10645102 -216879476 + (CA)n Simple_repeat Simple_repeat 1 38 0 5098 251 54 25 chr3 10645102 10646123 -216878455 + L1MB7 LINE L1 758 1748 -4896 2176 92 0 44 chr3 10646123 10646438 -216878140 - AluY SINE Alu -10 301 1 5098 251 54 25 chr3 10646438 10648086 -216876492 + L1MB7 LINE L1 1748 3655 -2989 1457 130 31 0 chr3 10648133 10648356 -216876222 - MER30 DNA MER1_type 0 230 1 3415 219 29 16 chr3 10648449 10649232 -216875346 + L1MB7 LINE L1 5089 5893 -789 366 79 40 0 chr3 10649232 10649308 -216875270 + (TA)n Simple_repeat Simple_repeat 1 79 0 3415 219 29 16 chr3 10649308 10650012 -216874566 + L1MB7 LINE L1 5893 6587 -95 1836 182 18 12 chr3 10650013 10650354 -216874224 + MER61A LTR ERV1 1 343 0 2187 158 53 11 chr3 10650678 10651162 -216873416 + MER61A-int LTR ERV1 240 777 -4440 268 93 0 0 chr3 10651155 10651198 -216873380 + MER61A-int LTR ERV1 1320 1362 -3855 * 18976 120 31 19 chr3 10651200 10653509 -216871069 + MER61A-int LTR ERV1 2226 3510 -1707 2407 83 3 3 chr3 10653509 10653810 -216870768 + AluY SINE Alu 1 301 -10 18976 120 31 19 chr3 10653810 10655540 -216869038 + MER61A-int LTR ERV1 3510 5217 0 2112 155 9 6 chr3 10655540 10655882 -216868696 + MER61A LTR ERV1 1 343 0 387 125 56 0 chr3 10655888 10655960 -216868618 + L1MB7 LINE L1 6591 6666 -16 294 179 0 0 chr3 10656025 10656081 -216868497 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 198 143 0 0 chr3 10656081 10656116 -216868462 + (CA)n Simple_repeat Simple_repeat 2 36 0 2720 202 59 12 chr3 10656485 10657079 -216867499 - LTR26E LTR ERV1 0 622 1 299 275 75 0 chr3 10657081 10657161 -216867417 - MIR SINE MIR -87 175 90 580 235 66 0 chr3 10657180 10657346 -216867232 + MLT1E LTR MaLR 1 177 -416 2771 173 92 25 chr3 10657354 10657965 -216866613 + LTR51 LTR ERV1 1 657 -14 5787 66 31 28 chr3 10657965 10658743 -216865835 + LTR17 LTR ERV1 1 780 0 2771 173 92 25 chr3 10658743 10658760 -216865818 + LTR51 LTR ERV1 657 671 0 1056 196 51 126 chr3 10658810 10658971 -216865607 + MLT1E LTR MaLR 210 329 -264 2718 180 73 49 chr3 10658971 10659681 -216864897 - LTR8A LTR ERV1 0 727 1 1056 196 51 126 chr3 10659681 10659891 -216864687 + MLT1E LTR MaLR 329 553 -40 2350 138 35 45 chr3 10659900 10660499 -216864079 + MER4B LTR ERV1 4 766 0 340 222 56 116 chr3 10660574 10660753 -216863825 - MER3 DNA MER1_type 0 209 44 2908 196 53 6 chr3 10660753 10660942 -216863636 + MER82 DNA MER2_type 1 180 -473 819 80 0 0 chr3 10660942 10661054 -216863524 + (TA)n Simple_repeat Simple_repeat 1 112 0 2908 196 53 6 chr3 10661054 10661485 -216863093 + MER82 DNA MER2_type 180 650 -3 340 222 56 116 chr3 10661485 10661521 -216863057 - MER3 DNA MER1_type -165 44 7 399 331 47 12 chr3 10661964 10662136 -216862442 - MER5A DNA MER1_type -5 184 7 222 118 0 0 chr3 10663085 10663119 -216861459 + (T)n Simple_repeat Simple_repeat 1 34 0 378 0 0 0 chr3 10663504 10663546 -216861032 + (TG)n Simple_repeat Simple_repeat 2 43 0 298 355 48 28 chr3 10663747 10663995 -216860583 + L2 LINE L2 2827 3079 -193 507 306 56 26 chr3 10664081 10664313 -216860265 + L2 LINE L2 3075 3313 0 190 301 49 49 chr3 10664314 10664437 -216860141 + MIR SINE MIR 140 262 0 2399 103 0 0 chr3 10665735 10666045 -216858533 + AluSq SINE Alu 1 310 -3 439 294 62 6 chr3 10666304 10666464 -216858114 - Charlie8 DNA MER1_type -2152 265 97 533 266 84 35 chr3 10666952 10667210 -216857368 - HAL1 LINE L1 -1133 1374 1089 2234 97 3 3 chr3 10667210 10667508 -216857070 - AluSx SINE Alu -14 298 1 533 266 84 35 chr3 10667508 10667643 -216856935 - HAL1 LINE L1 -1418 1089 962 2350 78 0 7 chr3 10667690 10667996 -216856582 - AluY SINE Alu -7 304 1 2511 260 39 25 chr3 10668000 10669644 -216854934 + L1MEc LINE L1 1599 3226 -2989 1457 130 31 0 chr3 10669691 10669914 -216854664 - MER30 DNA MER1_type 0 230 1 3415 219 29 17 chr3 10670007 10670791 -216853787 + L1MB7 LINE L1 4591 5395 -789 366 79 40 0 chr3 10670791 10670867 -216853711 + (TA)n Simple_repeat Simple_repeat 1 79 0 3415 219 29 17 chr3 10670867 10671571 -216853007 + L1MB7 LINE L1 5395 6089 -95 1836 182 18 12 chr3 10671572 10671913 -216852665 + MER61A LTR ERV1 1 343 0 2067 165 53 13 chr3 10672240 10672722 -216851856 + MER61A-int LTR ERV1 243 777 -4440 * 3903 103 12 5 chr3 10672715 10673375 -216851203 + MER61A-int LTR ERV1 1320 2030 -3187 439 294 62 6 chr3 10673947 10674107 -216850471 - Charlie8 DNA MER1_type -2152 265 97 677 268 77 87 chr3 10674595 10674853 -216849725 - HAL1 LINE L1 -1133 1374 1115 2234 97 3 3 chr3 10674853 10675151 -216849427 - AluSx SINE Alu -14 298 1 318 182 0 15 chr3 10675104 10675170 -216849408 - AluSg/x SINE Alu -120 180 116 * 677 268 77 87 chr3 10675151 10675333 -216849245 - HAL1 LINE L1 -1392 1115 933 2421 65 0 7 chr3 10675333 10675639 -216848939 - AluY SINE Alu -7 304 1 677 268 77 87 chr3 10675639 10675872 -216848706 - HAL1 LINE L1 -1574 933 704 2045 141 0 0 chr3 10675984 10676281 -216848297 + AluSx SINE Alu 1 297 -15 375 194 21 11 chr3 10676438 10676531 -216848047 - MER53 DNA DNA -8 181 88 281 111 74 0 chr3 10676516 10676570 -216848008 + MER53 DNA DNA 126 183 -6 * 378 292 48 84 chr3 10676582 10676830 -216847748 - HAL1 LINE L1 -2075 432 205 659 224 6 33 chr3 10676830 10677013 -216847565 - MER104 DNA MER2_type -1 179 2 378 292 48 84 chr3 10677013 10677202 -216847376 - HAL1 LINE L1 -2302 205 11 1026 259 52 32 chr3 10677725 10678251 -216846327 - L2 LINE L2 -34 3279 2749 313 177 0 152 chr3 10679930 10680009 -216844569 - L2 LINE L2 -1 3312 3246 208 348 111 39 chr3 10680165 10680372 -216844206 - L3 LINE CR1 0 1577 1356 487 222 22 89 chr3 10680698 10680878 -216843700 - MIR3 SINE MIR -21 187 20 2371 190 47 2 chr3 10680942 10681389 -216843189 - LTR24 LTR ERV1 0 467 1 788 245 66 9 chr3 10681585 10681797 -216842781 + MER58A DNA MER1_type 1 224 0 191 122 0 24 chr3 10682296 10682337 -216842241 + (TA)n Simple_repeat Simple_repeat 2 41 0 2084 136 0 0 chr3 10682523 10682825 -216841753 + AluSx SINE Alu 1 302 -10 5566 232 88 33 chr3 10682860 10683846 -216840732 - L1M4c LINE L1 -4794 1852 738 342 0 0 0 chr3 10683846 10683884 -216840694 + (TG)n Simple_repeat Simple_repeat 1 38 0 5566 232 88 33 chr3 10683884 10684647 -216839931 - L1M4c LINE L1 -5908 738 19 195 100 0 0 chr3 10685039 10685069 -216839509 + (TAA)n Simple_repeat Simple_repeat 1 30 0 288 185 0 0 chr3 10685303 10685357 -216839221 - MER116 DNA Mariner -20 60 7 239 242 0 0 chr3 10685464 10685526 -216839052 - MER103 DNA DNA -50 116 55 215 194 0 0 chr3 10686263 10686299 -216838279 + MIR SINE MIR 114 149 -59 593 317 116 0 chr3 10686467 10686691 -216837887 + MIR SINE MIR 10 259 -3 1177 181 50 23 chr3 10687292 10687596 -216836982 + MER33 DNA MER1_type 1 302 -22 1033 39 0 0 chr3 10687824 10687953 -216836625 - L1PA5 LINE L1 0 6154 6026 1572 119 0 21 chr3 10688035 10688271 -216836307 + AluSg/x SINE Alu 79 309 -3 1012 314 74 17 chr3 10688280 10688687 -216835891 - LTR16A LTR ERVL -5 445 16 559 224 71 11 chr3 10688784 10688967 -216835611 - MER113 DNA MER1_type? -207 314 121 796 168 37 6 chr3 10688981 10689142 -216835436 - Tigger1 DNA MER2_type 0 2418 2253 259 278 56 8 chr3 10689467 10689593 -216834985 + L1MD3 LINE L1 7807 7938 -57 315 322 0 0 chr3 10689845 10689935 -216834643 - L1MC4 LINE L1 -1339 6703 6614 418 314 74 26 chr3 10689987 10690216 -216834362 - MIR SINE MIR -11 251 12 1754 228 89 9 chr3 10690279 10690727 -216833851 - MLT1E3 LTR MaLR -2 622 139 285 83 0 0 chr3 10690789 10690825 -216833753 - MLT1E3 LTR MaLR -584 40 5 2262 107 13 0 chr3 10690876 10691175 -216833403 + AluSx SINE Alu 1 303 -9 5997 55 16 0 chr3 10691451 10692222 -216832356 - L1P LINE L1 -1368 4778 3996 * 9363 42 0 2 chr3 10692216 10693413 -216831165 - L1PA4 LINE L1 -2701 3445 2251 16114 33 1 0 chr3 10693415 10696123 -216828455 + L1PA4 LINE L1 3448 6155 0 28790 89 9 3 chr3 10696135 10700120 -216824458 - L1P LINE L1 -2135 4011 4 219 114 0 0 chr3 10700371 10700406 -216824172 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 636 330 44 0 chr3 10700629 10700856 -216823722 + MIR SINE MIR 2 238 -24 386 257 31 29 chr3 10702141 10702272 -216822306 + MIR SINE MIR 36 168 -40 900 256 91 20 chr3 10702555 10702950 -216821628 + LTR37A LTR ERV1 4 426 0 709 250 105 15 chr3 10703212 10703412 -216821166 + MLT1J LTR MaLR 294 511 0 207 277 26 142 chr3 10704679 10704834 -216819744 - MER5A DNA MER1_type -49 140 4 317 210 0 0 chr3 10704938 10705000 -216819578 - MSTD LTR MaLR 0 396 335 238 179 18 18 chr3 10705016 10705072 -216819506 + (TA)n Simple_repeat Simple_repeat 2 57 0 309 202 119 0 chr3 10705072 10705156 -216819422 - L1MC4 LINE L1 -1337 6705 6612 318 255 0 43 chr3 10705171 10705265 -216819313 + L1MC4 LINE L1 6616 6705 -1337 366 147 52 15 chr3 10705293 10705429 -216819149 + (TA)n Simple_repeat Simple_repeat 2 142 0 203 303 7 123 chr3 10706629 10706784 -216817794 - MER5A DNA MER1_type -49 140 4 389 161 0 0 chr3 10706887 10706949 -216817629 - MSTD LTR MaLR 0 396 335 562 196 6 6 chr3 10706965 10707138 -216817440 + (TA)n Simple_repeat Simple_repeat 2 174 0 310 286 0 22 chr3 10707145 10707236 -216817342 - L1MC4 LINE L1 -1339 6703 6615 * 337 258 22 0 chr3 10707156 10707245 -216817333 + L1MC4 LINE L1 6615 6705 -1337 229 142 57 19 chr3 10707273 10707379 -216817199 + (TA)n Simple_repeat Simple_repeat 1 110 0 241 270 0 11 chr3 10707380 10707469 -216817109 - L1MC4 LINE L1 -1341 6701 6614 203 188 21 0 chr3 10707475 10707523 -216817055 + (TA)n Simple_repeat Simple_repeat 1 49 0 330 235 59 12 chr3 10707524 10707609 -216816969 - L1MC4 LINE L1 -1340 6702 6614 508 101 58 18 chr3 10707615 10707899 -216816679 + (TA)n Simple_repeat Simple_repeat 1 295 0 344 156 33 39 chr3 10707920 10708100 -216816478 + (TA)n Simple_repeat Simple_repeat 1 179 0 26 0 0 0 chr3 10708112 10708138 -216816440 + AT_rich Low_complexity Low_complexity 1 26 0 323 199 39 19 chr3 10708138 10708254 -216816324 + (TA)n Simple_repeat Simple_repeat 1 122 -37 2326 88 0 3 chr3 10708254 10708549 -216816029 - AluSp SINE Alu -19 294 1 323 199 39 19 chr3 10708549 10708588 -216815990 + (TA)n Simple_repeat Simple_repeat 122 159 0 2087 222 35 48 chr3 10708614 10709136 -216815442 - MLT2B3 LTR ERVL -39 515 1 956 312 88 33 chr3 10710504 10711014 -216813564 + L3 LINE CR1 966 1503 -74 1853 158 61 28 chr3 10711091 10711145 -216813433 - THE1C LTR MaLR -1 374 323 2589 118 3 0 chr3 10711145 10711508 -216813070 + THE1B LTR MaLR 1 364 0 1853 158 61 28 chr3 10711508 10711815 -216812763 - THE1C LTR MaLR -52 323 1 202 276 0 17 chr3 10711958 10712016 -216812562 + GA-rich Low_complexity Low_complexity 6 62 0 255 79 0 0 chr3 10712119 10712157 -216812421 + (TG)n Simple_repeat Simple_repeat 1 38 0 336 244 35 12 chr3 10712565 10712651 -216811927 - L1MC4 LINE L1 -1340 6702 6615 511 121 50 18 chr3 10712656 10712942 -216811636 + (TA)n Simple_repeat Simple_repeat 1 295 0 415 178 43 21 chr3 10712963 10713289 -216811289 + (TA)n Simple_repeat Simple_repeat 1 333 0 2243 87 3 3 chr3 10713302 10713590 -216810988 - AluSp SINE Alu -25 288 1 28 0 0 0 chr3 10713597 10713625 -216810953 + AT_rich Low_complexity Low_complexity 1 28 0 1535 240 47 36 chr3 10713655 10714042 -216810536 - MLT2B3 LTR ERVL -39 515 125 334 155 127 28 chr3 10714850 10714921 -216809657 - THE1B LTR MaLR -286 78 1 202 276 0 17 chr3 10715064 10715122 -216809456 + GA-rich Low_complexity Low_complexity 6 62 0 255 79 0 0 chr3 10715225 10715263 -216809315 + (TG)n Simple_repeat Simple_repeat 1 38 0 695 187 84 0 chr3 10715489 10715557 -216809021 - MER104 DNA Tc2 -1718 180 119 747 61 10 0 chr3 10715557 10715656 -216808922 + L1PA5 LINE L1 6049 6148 -6 695 187 84 0 chr3 10715656 10715753 -216808825 - MER104 DNA Tc2 -1779 119 1 2388 180 95 15 chr3 10716001 10716529 -216808049 - L1MA4 LINE L1 -4 6478 5909 232 220 22 22 chr3 10716578 10716669 -216807909 - L1MC4 LINE L1 -1336 6706 6616 9108 166 25 18 chr3 10716705 10717135 -216807443 - L1MA4 LINE L1 -559 5923 5498 189 0 0 0 chr3 10717135 10717156 -216807422 + (TTA)n Simple_repeat Simple_repeat 2 22 0 9108 166 25 18 chr3 10717156 10718958 -216805620 - L1MA4 LINE L1 -984 5498 3690 4098 211 29 27 chr3 10718966 10721456 -216803122 - L1MA4 LINE L1 -3282 3046 380 843 233 48 29 chr3 10721904 10722110 -216802468 - MER63A DNA MER1_type 0 210 1 194 207 17 0 chr3 10722390 10722448 -216802130 + (TA)n Simple_repeat Simple_repeat 2 60 0 * 435 92 0 0 chr3 10722447 10722512 -216802066 + (GA)n Simple_repeat Simple_repeat 2 66 0 256 184 20 0 chr3 10722838 10722887 -216801691 + L2 LINE L2 3258 3307 -6 286 253 23 11 chr3 10723021 10723108 -216801470 + MIR SINE MIR 76 163 -99 202 308 46 0 chr3 10724389 10724454 -216800124 - L2 LINE L2 -8 3305 3238 191 268 205 16 chr3 10724464 10724591 -216799987 + MIR SINE MIR 111 261 -1 200 250 0 0 chr3 10724995 10725035 -216799543 + (TA)n Simple_repeat Simple_repeat 1 40 0 241 254 0 36 chr3 10725248 10725303 -216799275 - L2 LINE L2 -84 3188 3136 681 294 37 60 chr3 10725423 10725722 -216798856 - L2 LINE L2 -186 3127 2836 2106 141 30 28 chr3 10725729 10726092 -216798486 + THE1B LTR MaLR 1 364 0 396 295 172 37 chr3 10726165 10726625 -216797953 + MLT1G1 LTR MaLR 26 505 -50 2027 86 0 4 chr3 10726650 10726918 -216797660 - L1PA13 LINE L1 -3 6160 5894 226 325 97 18 chr3 10726980 10727094 -216797484 - MIR SINE MIR -77 185 63 189 176 20 78 chr3 10727782 10727833 -216796745 + L2 LINE L2 3257 3304 -9 206 222 0 22 chr3 10727839 10727884 -216796694 + MIR SINE MIR 109 152 -56 254 283 0 17 chr3 10728768 10728828 -216795750 + L2 LINE L2 3200 3258 -14 257 303 143 8 chr3 10729620 10729739 -216794839 + L2 LINE L2 3137 3271 -1 426 96 0 0 chr3 10730230 10730303 -216794275 + (TA)n Simple_repeat Simple_repeat 2 74 0 213 39 0 0 chr3 10730302 10730328 -216794250 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 439 315 104 71 chr3 10730816 10731406 -216793172 - L2 LINE L2 0 3272 2658 182 339 10 128 chr3 10731669 10731864 -216792714 - L2 LINE L2 -86 3186 3015 27 87 0 0 chr3 10731880 10731949 -216792629 + AT_rich Low_complexity Low_complexity 1 69 0 187 320 58 10 chr3 10731971 10732074 -216792504 - MIR SINE MIR -56 206 99 203 178 0 22 chr3 10732757 10732802 -216791776 + (TG)n Simple_repeat Simple_repeat 2 45 0 3671 184 15 32 chr3 10733877 10734589 -216789989 - L1MB3 LINE L1 -8 6175 5476 985 191 5 0 chr3 10734608 10734807 -216789771 - L1MA4 LINE L1 -5 6295 6096 1079 173 13 4 chr3 10734808 10735033 -216789545 - L1MB3 LINE L1 -683 5495 5269 840 221 35 0 chr3 10735101 10735273 -216789305 + MER58A DNA MER1_type 47 224 0 374 178 56 11 chr3 10735411 10735501 -216789077 + MER53 DNA DNA 95 188 -1 641 308 110 11 chr3 10736397 10736841 -216787737 + LTR33A LTR ERVL 16 521 -2 2212 115 3 0 chr3 10737912 10738217 -216786361 - AluSc SINE Alu -3 306 1 192 358 9 46 chr3 10738293 10738402 -216786176 - MIR3 SINE MIR -21 187 83 265 256 22 61 chr3 10738529 10738709 -216785869 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 323 200 40 0 chr3 10740056 10740131 -216784447 - MLT1K LTR MaLR -25 563 486 289 418 0 0 chr3 10741440 10741543 -216783035 + L2 LINE L2 3137 3239 -33 621 319 21 21 chr3 10741560 10741795 -216782783 - MIR SINE MIR -6 256 22 2144 107 3 10 chr3 10741901 10742200 -216782378 + AluSq SINE Alu 3 299 -14 23 33 0 0 chr3 10742315 10742345 -216782233 + AT_rich Low_complexity Low_complexity 1 30 0 338 164 0 16 chr3 10742821 10742882 -216781696 + MLT2B1 LTR ERVL 4 63 -351 800 130 0 0 chr3 10742884 10742992 -216781586 + AluSq/x SINE Alu 28 135 -178 2286 125 0 0 chr3 10742992 10743304 -216781274 + AluSx SINE Alu 1 312 0 1889 189 115 22 chr3 10743314 10743692 -216780886 + MLT2B1 LTR ERVL 65 487 -33 204 40 0 0 chr3 10743692 10743717 -216780861 + (TG)n Simple_repeat Simple_repeat 2 26 0 1889 189 115 22 chr3 10743717 10743755 -216780823 + MLT2B1 LTR ERVL 487 520 0 31 26 0 0 chr3 10743800 10743838 -216780740 + AT_rich Low_complexity Low_complexity 1 38 0 353 274 37 79 chr3 10743976 10744066 -216780512 - HAL1 LINE L1 -694 1813 1734 1271 269 96 5 chr3 10744066 10744441 -216780137 - MLT1I LTR MaLR 0 409 1 353 274 37 79 chr3 10744441 10744540 -216780038 - HAL1 LINE L1 -773 1734 1632 611 227 0 16 chr3 10744818 10744946 -216779632 + MER3 DNA MER1_type 2 127 -82 232 222 6 136 chr3 10745772 10745864 -216778714 - L1MC4a LINE L1 -1842 5966 5906 1962 130 33 7 chr3 10745864 10746163 -216778415 - AluSg SINE Alu -3 307 1 232 222 6 136 chr3 10746163 10746246 -216778332 - L1MC4a LINE L1 -1902 5906 5814 830 171 94 22 chr3 10746286 10746467 -216778111 + MIR SINE MIR 42 235 -27 190 227 0 0 chr3 10746481 10746525 -216778053 - MER5A DNA MER1_type -139 50 7 288 369 31 15 chr3 10747386 10747516 -216777062 - MIR SINE MIR -81 181 50 625 273 64 64 chr3 10748336 10748480 -216776098 - LTR16C LTR ERVL 0 491 348 1937 191 43 5 chr3 10748480 10748852 -216775726 + MLT1B LTR MaLR 5 390 0 625 273 64 64 chr3 10748852 10749099 -216775479 - LTR16C LTR ERVL -142 349 100 184 350 60 10 chr3 10749277 10749377 -216775201 + L2 LINE L2 2950 3054 -218 216 311 19 19 chr3 10749802 10749908 -216774670 - MIR SINE MIR -60 148 43 2764 89 92 10 chr3 10750316 10750730 -216773848 + LTR7 LTR ERV1 1 448 -2 877 243 55 80 chr3 10750752 10751132 -216773446 + L2 LINE L2 2673 3049 -264 203 218 253 58 chr3 10751136 10751223 -216773355 + L2 LINE L2 3210 3313 0 351 44 0 0 chr3 10751228 10751273 -216773305 + (CA)n Simple_repeat Simple_repeat 2 46 0 723 281 23 0 chr3 10751682 10751903 -216772675 - LTR16C LTR ERVL 0 491 266 264 91 0 0 chr3 10752182 10752215 -216772363 + U2 snRNA snRNA 1 33 -155 1808 211 26 5 chr3 10752351 10752730 -216771848 + MLT2D LTR ERVL 9 395 -19 5080 161 21 35 chr3 10753052 10753325 -216771253 - L1MA7 LINE L1 0 6291 6016 2066 109 25 0 chr3 10753325 10753609 -216770969 - AluSx SINE Alu -21 291 1 5080 161 21 35 chr3 10753609 10754541 -216770037 - L1MA7 LINE L1 -275 6016 5106 215 182 13 0 chr3 10755511 10755588 -216768990 + (TA)n Simple_repeat Simple_repeat 2 79 0 26 30 0 0 chr3 10755872 10755905 -216768673 + AT_rich Low_complexity Low_complexity 1 33 0 1702 164 17 24 chr3 10756656 10756948 -216767630 + AluJb SINE Alu 1 290 -22 188 245 118 29 chr3 10756992 10757094 -216767484 + MIR SINE MIR 96 206 -56 1100 227 114 70 chr3 10757225 10757656 -216766922 - LTR16A1 LTR ERVL -3 454 5 338 253 6 114 chr3 10757904 10758070 -216766508 - MIR SINE MIR -8 254 107 314 400 8 0 chr3 10758352 10758472 -216766106 - L2 LINE L2 -4 3268 3148 1096 200 95 27 chr3 10759065 10759380 -216765198 - MSTD LTR MaLR 0 396 4 4712 243 39 41 chr3 10759383 10760629 -216763949 - MSTD-int LTR MaLR 0 1735 492 5137 160 17 40 chr3 10760636 10761223 -216763355 - MER49 LTR ERV1 -11 912 352 983 28 0 0 chr3 10761223 10761332 -216763246 + L1PA5 LINE L1 6046 6154 0 5137 160 17 40 chr3 10761332 10761677 -216762901 - MER49 LTR ERV1 -571 352 1 1879 230 20 49 chr3 10761677 10761940 -216762638 - MSTD-int LTR MaLR -1240 495 253 2105 146 0 0 chr3 10761940 10762241 -216762337 - AluSx SINE Alu -11 301 1 1879 230 20 49 chr3 10762241 10762486 -216762092 - MSTD-int LTR MaLR -1482 253 2 1626 235 25 38 chr3 10762489 10762889 -216761689 - MSTD LTR MaLR -1 395 1 977 311 115 21 chr3 10763458 10763970 -216760608 + MLT1K LTR MaLR 14 573 -15 383 265 91 8 chr3 10764354 10764486 -216760092 + LTR16C LTR ERVL 345 487 -4 236 333 87 40 chr3 10764688 10764814 -216759764 + MIR SINE MIR 20 151 -111 297 317 67 0 chr3 10765779 10765883 -216758695 + MER91C DNA MER1_type 1 111 -29 354 322 94 43 chr3 10766304 10766559 -216758019 + L1ME LINE L1 5556 5823 -298 635 268 93 66 chr3 10766761 10766980 -216757598 - HAL1 LINE L1 -5 2502 2290 1905 173 3 0 chr3 10766980 10767286 -216757292 + AluSx SINE Alu 3 309 -3 635 268 93 66 chr3 10767286 10767551 -216757027 - HAL1 LINE L1 -217 2290 2005 360 256 241 0 chr3 10767635 10767772 -216756806 - MIR SINE MIR -91 171 2 1814 266 58 40 chr3 10767857 10768439 -216756139 + MLT1E LTR MaLR 1 593 0 488 258 10 78 chr3 10770025 10770235 -216754343 - MIR SINE MIR -44 218 25 733 280 144 46 chr3 10770511 10770694 -216753884 - L2 LINE L2 0 3313 3149 2651 146 23 34 chr3 10770694 10771133 -216753445 + Tigger2a DNA MER2_type 1 434 0 733 280 144 46 chr3 10771133 10771494 -216753084 - L2 LINE L2 -164 3149 2715 207 313 134 42 chr3 10771837 10772054 -216752524 - L2 LINE L2 -193 3079 2843 1173 191 50 0 chr3 10772231 10772451 -216752127 - MER46A DNA MER2_type -5 231 1 803 268 45 0 chr3 10772451 10772675 -216751903 - MIR SINE MIR -27 235 2 370 348 14 29 chr3 10772817 10772955 -216751623 - L2 LINE L2 0 3272 3137 732 351 77 26 chr3 10773582 10774049 -216750529 - LTR16C LTR ERVL 0 491 1 220 231 19 0 chr3 10774051 10774103 -216750475 + MIR SINE MIR 102 154 -108 671 224 73 54 chr3 10774229 10774434 -216750144 - MER63A DNA MER1_type -1 209 1 2075 154 0 0 chr3 10774768 10775080 -216749498 + AluJb SINE Alu 1 312 0 435 152 0 0 chr3 10775104 10775183 -216749395 + G-rich Low_complexity Low_complexity 3 81 0 296 100 0 20 chr3 10775179 10775229 -216749349 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 * 952 212 97 81 chr3 10775299 10775679 -216748899 - LTR25 LTR ERV1 -330 464 36 4639 166 44 9 chr3 10775722 10776477 -216748101 - LTR39 LTR ERV1 -2 781 1 257 357 23 16 chr3 10776993 10777122 -216747456 - L3 LINE CR1 -31 1546 1417 538 375 8 8 chr3 10777128 10777373 -216747205 - MIR SINE MIR 0 262 18 194 350 39 19 chr3 10777480 10777583 -216746995 - L3 LINE CR1 -376 1201 1097 2532 174 19 5 chr3 10777689 10778109 -216746469 + MSTA LTR MaLR 1 426 -2 201 395 8 15 chr3 10778660 10778794 -216745784 - L3 LINE CR1 -1015 562 430 504 48 0 0 chr3 10778866 10778929 -216745649 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 245 218 0 51 chr3 10778929 10779002 -216745576 + L1MC4 LINE L1 6622 6690 -1352 199 357 24 32 chr3 10779425 10779551 -216745027 + MIR3 SINE MIR 6 130 -78 490 331 18 0 chr3 10779777 10779940 -216744638 - MIR SINE MIR -96 166 1 201 74 0 0 chr3 10780606 10780633 -216743945 + (CA)n Simple_repeat Simple_repeat 2 28 0 373 264 246 0 chr3 10780875 10781042 -216743536 + L2 LINE L2 2579 2786 -528 284 319 128 84 chr3 10781119 10781454 -216743124 + L2 LINE L2 2918 3267 -5 2700 42 0 0 chr3 10782536 10782843 -216741735 - AluY SINE Alu -4 307 1 504 335 5 11 chr3 10785595 10785783 -216738795 - MER5A DNA MER1_type -2 187 1 180 0 0 0 chr3 10785884 10785904 -216738674 + (A)n Simple_repeat Simple_repeat 1 20 0 1727 182 3 25 chr3 10786738 10787056 -216737522 - AluJb SINE Alu -1 311 1 227 291 116 12 chr3 10787568 10787654 -216736924 - MIR SINE MIR -80 128 34 221 224 20 0 chr3 10787735 10787784 -216736794 - L2 LINE L2 0 3313 3264 216 286 0 16 chr3 10787834 10787897 -216736681 + MIR3 SINE MIR 116 177 -31 297 169 0 0 chr3 10788312 10788371 -216736207 + (TG)n Simple_repeat Simple_repeat 2 60 0 253 286 257 7 chr3 10792046 10792186 -216732392 - MER117 DNA MER1_type -6 191 17 638 307 47 14 chr3 10792284 10792499 -216732079 + MIR SINE MIR 35 256 -6 300 293 101 20 chr3 10792943 10793141 -216731437 + L2 LINE L2 2764 2977 -337 273 282 38 92 chr3 10793353 10793484 -216731094 + L2 LINE L2 3149 3272 0 2117 123 0 32 chr3 10793638 10793954 -216730624 + AluSx SINE Alu 1 306 -6 207 313 36 24 chr3 10794647 10794730 -216729848 - L2 LINE L2 0 3272 3189 4617 173 54 26 chr3 10795647 10796541 -216728037 - MER21A LTR ERV1 0 931 13 217 125 62 23 chr3 10796547 10796675 -216727903 + (TA)n Simple_repeat Simple_repeat 1 133 0 879 172 46 0 chr3 10797342 10797516 -216727062 + L1MD3 LINE L1 7804 7985 -10 318 180 0 0 chr3 10797704 10797765 -216726813 + (CA)n Simple_repeat Simple_repeat 2 62 0 227 184 26 79 chr3 10797770 10797846 -216726732 + L1MCa LINE L1 1995 2066 -4360 393 301 87 39 chr3 10797864 10798093 -216726485 - MIR SINE MIR -11 251 12 1991 201 158 26 chr3 10798156 10798702 -216725876 - MLT1E3 LTR MaLR -2 622 5 2286 107 13 0 chr3 10798753 10799052 -216725526 + AluSx SINE Alu 1 303 -9 1733 233 96 20 chr3 10800434 10800852 -216723726 + MLT1F LTR MaLR 16 478 -64 276 30 0 0 chr3 10800852 10800885 -216723693 + (CA)n Simple_repeat Simple_repeat 2 34 0 1733 233 96 20 chr3 10800885 10800956 -216723622 + MLT1F LTR MaLR 478 542 0 1816 182 0 3 chr3 10802009 10802322 -216722256 - AluJb SINE Alu 0 312 1 690 225 128 31 chr3 10802490 10802869 -216721709 + MLT1H LTR MaLR 76 548 -1 271 304 33 0 chr3 10802882 10802974 -216721604 - MIR SINE MIR -54 208 114 484 276 101 65 chr3 10802975 10803311 -216721267 - MLT1K LTR MaLR -58 530 120 222 344 0 0 chr3 10803848 10803909 -216720669 + MIR3 SINE MIR 145 205 -3 637 273 73 36 chr3 10803913 10804133 -216720445 + MIR SINE MIR 5 232 -30 415 287 44 33 chr3 10804152 10804333 -216720245 + L2 LINE L2 2641 2823 -491 504 270 11 39 chr3 10804364 10804542 -216720036 + L2 LINE L2 1653 1825 -1489 1179 22 0 7 chr3 10804584 10804723 -216719855 - AluY SINE Alu -14 297 160 403 304 122 21 chr3 10804740 10805026 -216719552 + L2 LINE L2 2340 2654 -660 1539 226 6 12 chr3 10805061 10805406 -216719172 - MER4D LTR ERV1 -7 896 554 1319 201 60 28 chr3 10805441 10805512 -216719066 - MER49 LTR ERV1 -630 293 226 1893 149 0 0 chr3 10805512 10805830 -216718748 - AluSx SINE Alu 0 318 1 1319 201 60 28 chr3 10805830 10806041 -216718537 - MER49 LTR ERV1 -697 226 1 1115 265 76 18 chr3 10806041 10806634 -216717944 + L2 LINE L2 2682 3307 -6 416 301 92 60 chr3 10806681 10806930 -216717648 + L2 LINE L2 3016 3272 0 1366 184 130 12 chr3 10808605 10808944 -216715634 + MLT2D LTR ERVL 8 486 -34 2089 104 0 7 chr3 10809071 10809377 -216715201 + AluSx SINE Alu 9 312 0 254 313 0 0 chr3 10810709 10810773 -216713805 + MIR SINE MIR 54 117 -91 240 328 39 23 chr3 10810981 10811109 -216713469 + MIR3 SINE MIR 51 180 -28 405 290 82 29 chr3 10811586 10811793 -216712785 - MIR SINE MIR 0 262 45 260 383 7 7 chr3 10813005 10813159 -216711419 - MIR SINE MIR -12 250 97 2894 85 95 5 chr3 10813457 10813868 -216710710 + LTR7 LTR ERV1 1 448 -2 20629 84 24 18 chr3 10813870 10816840 -216707738 + HERVH LTR ERV1 1 2987 -4726 903 142 20 0 chr3 10816834 10816982 -216707596 + HERVH LTR ERV1 3140 3290 -4423 * 3410 111 4 6 chr3 10816972 10817475 -216707103 + HERVH LTR ERV1 3492 3993 -3720 4464 139 1 1 chr3 10817477 10818139 -216706439 + HERVH LTR ERV1 4488 5149 -2564 1432 124 18 5 chr3 10818140 10818357 -216706221 + HERVH LTR ERV1 5600 5819 -1894 * 2422 98 53 13 chr3 10818355 10818732 -216705846 + HERVH LTR ERV1 7322 7713 0 2957 75 95 5 chr3 10818732 10819143 -216705435 + LTR7 LTR ERV1 1 448 -2 189 263 113 0 chr3 10819738 10819818 -216704760 - MIR SINE MIR -95 167 79 209 357 10 10 chr3 10819996 10820094 -216704484 - MIR SINE MIR -149 113 16 1549 249 60 29 chr3 10820550 10821079 -216703499 - L1MD2 LINE L1 -397 5962 5616 2300 117 42 36 chr3 10821079 10821439 -216703139 + THE1B LTR MaLR 3 364 0 1549 249 60 29 chr3 10821439 10821493 -216703085 - L1MD2 LINE L1 -743 5616 5565 286 284 37 0 chr3 10821643 10821724 -216702854 + LTR33A LTR ERVL 71 154 -369 353 309 148 38 chr3 10821880 10822072 -216702506 - MIR SINE MIR -40 222 5 3913 120 66 66 chr3 10822099 10822873 -216701705 - LTR1 LTR ERV1 0 785 12 24 53 0 0 chr3 10823248 10823286 -216701292 + AT_rich Low_complexity Low_complexity 1 38 0 527 198 10 10 chr3 10823644 10823740 -216700838 + MER81 DNA DNA 2 97 -17 350 104 0 0 chr3 10823822 10823874 -216700704 - MLT2B1 LTR ERVL -3 517 399 614 133 9 0 chr3 10823874 10823987 -216700591 + (CA)n Simple_repeat Simple_repeat 1 114 0 244 167 30 30 chr3 10825080 10825146 -216699432 + (CAGAGA)n Simple_repeat Simple_repeat 5 70 0 599 240 39 29 chr3 10825240 10825448 -216699130 - Charlie1 DNA MER1_type -2 2759 2550 1928 208 44 20 chr3 10825462 10825915 -216698663 - Charlie1a DNA MER1_type -747 708 245 2311 181 46 46 chr3 10826151 10826647 -216697931 - MER67D LTR ERV1 -18 496 1 1241 74 27 3 chr3 10827590 10827776 -216696802 + L1P2 LINE L1 5343 5531 -623 * 14348 49 4 1 chr3 10827771 10829674 -216694904 - L1P LINE L1 -790 5356 3448 7962 37 0 1 chr3 10829676 10830722 -216693856 + L1P LINE L1 2251 3295 -2851 387 259 26 43 chr3 10830879 10830995 -216693583 + L2 LINE L2 3200 3313 0 1219 188 135 9 chr3 10832669 10832988 -216691590 + MLT2D LTR ERVL 8 366 -48 2093 120 0 32 chr3 10833135 10833443 -216691135 + AluSx SINE Alu 9 306 -6 206 313 36 24 chr3 10834139 10834222 -216690356 - L2 LINE L2 0 3272 3189 4165 175 54 27 chr3 10835139 10836034 -216688544 - MER21A LTR ERV1 0 931 13 217 125 62 23 chr3 10836040 10836168 -216688410 + (TA)n Simple_repeat Simple_repeat 2 134 0 738 184 46 0 chr3 10836835 10837009 -216687569 + L1MD3 LINE L1 7804 7985 -10 290 197 13 13 chr3 10837339 10837415 -216687163 - Charlie1a DNA MER1_type -1135 320 245 22013 172 21 36 chr3 10837419 10839545 -216685033 - L1MA3 LINE L1 -13 7711 5554 947 117 0 22 chr3 10839545 10839725 -216684853 + (TTC)n Simple_repeat Simple_repeat 2 177 0 22013 172 21 36 chr3 10839725 10839745 -216684833 - L1MA3 LINE L1 -2170 5554 5535 1848 179 7 3 chr3 10839745 10840047 -216684531 - AluSx SINE Alu -9 303 1 22013 172 21 36 chr3 10840047 10845802 -216678776 - L1MA3 LINE L1 -2189 5535 16 1032 217 43 27 chr3 10845805 10846063 -216678515 - Charlie1a DNA MER1_type -1193 262 1 230 93 0 23 chr3 10846574 10846617 -216677961 + (GGA)n Simple_repeat Simple_repeat 1 42 0 403 244 117 84 chr3 10846823 10847097 -216677481 - MLT1I LTR MaLR -53 356 74 2564 64 0 0 chr3 10847913 10848224 -216676354 - AluY SINE Alu 0 311 1 297 0 0 0 chr3 10848905 10848938 -216675640 + (TG)n Simple_repeat Simple_repeat 2 34 0 408 230 9 0 chr3 10848978 10849091 -216675487 - L1ME LINE L1 -5259 811 698 1653 191 30 1 chr3 10849123 10849503 -216675075 - L1MB5 LINE L1 -2 6178 5787 3041 233 109 23 chr3 10849518 10850098 -216674480 - L1M4 LINE L1 -3850 2532 2003 2093 143 187 9 chr3 10850098 10850537 -216674041 + LTR44 LTR ERV1 1 517 -2 3041 233 109 23 chr3 10850537 10851148 -216673430 - L1M4 LINE L1 -4379 2003 1237 1644 191 34 8 chr3 10851154 10851676 -216672902 - L1MC/D LINE L1 -743 5403 4902 731 272 67 70 chr3 10853284 10853700 -216670878 - MLT1J2 LTR MaLR -14 436 22 221 355 0 13 chr3 10853735 10853811 -216670767 - L2 LINE L2 -14 3258 3184 214 388 54 0 chr3 10853822 10853969 -216670609 - L2 LINE L2 -852 2462 2308 204 286 78 0 chr3 10854143 10854220 -216670358 - L2 LINE L2 -1651 1663 1581 240 227 0 0 chr3 10854468 10854512 -216670066 + L2 LINE L2 3221 3264 -8 302 250 150 25 chr3 10854523 10854723 -216669855 - L1MC4a LINE L1 -1876 5932 5708 581 49 12 0 chr3 10854729 10854810 -216669768 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1963 158 0 16 chr3 10854877 10855193 -216669385 + AluSx SINE Alu 1 311 -1 302 242 48 0 chr3 10855773 10855835 -216668743 - L2 LINE L2 -1 3271 3207 302 311 9 9 chr3 10856100 10856206 -216668372 + MIR SINE MIR 111 216 -46 246 278 247 0 chr3 10856755 10856852 -216667726 - L2 LINE L2 -993 2321 2201 25 0 0 0 chr3 10857104 10857129 -216667449 + AT_rich Low_complexity Low_complexity 1 25 0 313 250 0 34 chr3 10857968 10858056 -216666522 + MLT2E LTR ERVL 32 116 -512 573 246 94 6 chr3 10858141 10858312 -216666266 - MER5A DNA MER1_type -2 187 2 1264 247 82 5 chr3 10858659 10859064 -216665514 + L1ME1 LINE L1 5724 6159 -7 2367 97 10 0 chr3 10859140 10859449 -216665129 + AluSx SINE Alu 1 312 0 197 252 178 28 chr3 10859449 10859556 -216665022 - MIR3 SINE MIR -1 207 85 460 218 171 18 chr3 10860700 10860870 -216663708 + MER3 DNA MER1_type 7 202 -7 519 216 16 24 chr3 10861136 10861285 -216663293 - MLT1I LTR MaLR 0 409 280 408 272 105 37 chr3 10861311 10861502 -216663076 - MLT1I LTR MaLR -205 204 1 503 268 100 67 chr3 10861628 10861867 -216662711 - MIR SINE MIR -13 249 3 393 211 88 26 chr3 10863444 10863558 -216661020 + L1ME1 LINE L1 5996 6116 -50 30 0 0 0 chr3 10863581 10863611 -216660967 + AT_rich Low_complexity Low_complexity 1 30 0 847 93 0 0 chr3 10863639 10863747 -216660831 + FRAM SINE Alu 39 146 -30 27 0 0 0 chr3 10863750 10863777 -216660801 + AT_rich Low_complexity Low_complexity 1 27 0 334 272 192 8 chr3 10864283 10864408 -216660170 - MIR SINE MIR -75 187 40 326 306 6 45 chr3 10864822 10864979 -216659599 - MIR SINE MIR -92 170 20 230 257 36 0 chr3 10865063 10865203 -216659375 + (TA)n Simple_repeat Simple_repeat 2 146 0 23 0 0 0 chr3 10865412 10865435 -216659143 + AT_rich Low_complexity Low_complexity 1 23 0 438 338 6 12 chr3 10865585 10865745 -216658833 - MIR SINE MIR -32 230 72 349 190 51 15 chr3 10865857 10865994 -216658584 + (TA)n Simple_repeat Simple_repeat 1 142 0 705 71 0 10 chr3 10866129 10866228 -216658350 + MER4A LTR ERV1 1 98 -566 1560 117 163 85 chr3 10866228 10866603 -216657975 + MER4A LTR ERV1 261 664 0 269 247 41 10 chr3 10866603 10866695 -216657883 - MER117 DNA MER1_type -67 130 36 180 161 0 0 chr3 10867363 10867394 -216657184 - L2 LINE L2 -20 3293 3263 188 316 0 18 chr3 10867439 10867496 -216657082 - MIR SINE MIR -63 145 90 1462 157 141 0 chr3 10867498 10867746 -216656832 + AluSg SINE Alu 1 283 -27 435 342 87 27 chr3 10867781 10868114 -216656464 - LTR16C LTR ERVL -9 482 130 247 253 6 118 chr3 10868247 10868417 -216656161 + LTR16A LTR ERVL 112 262 -188 473 324 112 27 chr3 10869976 10870306 -216654272 + MLT1J2 LTR MaLR 72 429 -21 247 273 65 0 chr3 10870315 10870392 -216654186 + MIR SINE MIR 178 259 -3 265 228 41 76 chr3 10871006 10871151 -216653427 - MLT1K LTR MaLR -20 568 429 472 234 19 91 chr3 10871236 10871390 -216653188 + L2 LINE L2 3169 3311 -2 211 333 103 0 chr3 10872850 10872967 -216651611 - L2 LINE L2 -3 3310 3182 24 0 0 0 chr3 10873897 10873921 -216650657 + AT_rich Low_complexity Low_complexity 1 24 0 321 211 0 28 chr3 10874055 10874126 -216650452 + Tigger2 DNA MER2_type 1 69 -2649 * 1267 132 5 5 chr3 10874124 10874336 -216650242 + Tigger2 DNA MER2_type 2280 2491 -227 608 213 0 0 chr3 10874336 10874444 -216650134 + AluSc SINE Alu 132 239 -70 2412 128 18 3 chr3 10874444 10874826 -216649752 + Tigger2 DNA MER2_type 2331 2718 0 937 247 14 0 chr3 10875592 10875811 -216648767 - MER58A DNA MER1_type -2 222 1 382 254 111 8 chr3 10875845 10875899 -216648679 - MER5A DNA MER1_type -30 159 112 2224 117 0 0 chr3 10875899 10876198 -216648380 + AluSq SINE Alu 1 299 -14 382 254 111 8 chr3 10876198 10876269 -216648309 - MER5A DNA MER1_type -77 112 21 2042 165 63 18 chr3 10876460 10876859 -216647719 - MSTB LTR MaLR 0 426 10 320 271 54 39 chr3 10877012 10877141 -216647437 + L2 LINE L2 3183 3313 0 244 221 103 73 chr3 10877350 10877486 -216647092 + MER3 DNA MER1_type 7 146 -63 1847 243 60 33 chr3 10877503 10878107 -216646471 - L1M4 LINE L1 -5921 621 2 182 333 78 33 chr3 10878116 10878206 -216646372 + L2 LINE L2 3002 3095 -177 336 307 88 9 chr3 10878299 10878413 -216646165 + L2 LINE L2 3137 3259 -13 1879 134 10 14 chr3 10878757 10879048 -216645530 - AluSx SINE Alu -2 310 21 268 312 52 75 chr3 10879199 10879372 -216645206 + MIR3 SINE MIR 7 175 -33 192 309 59 0 chr3 10879512 10879580 -216644998 - L2 LINE L2 -5 3267 3196 1811 165 54 14 chr3 10879864 10880215 -216644363 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 10880231 10880353 -216644225 + MIR SINE MIR 113 234 -28 1728 171 86 9 chr3 10880353 10880692 -216643886 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 10880692 10880705 -216643873 + MIR SINE MIR 234 246 -16 904 204 18 44 chr3 10880715 10880940 -216643638 + MER20 DNA MER1_type 1 219 0 201 167 0 42 chr3 10881099 10881117 -216643461 + CT-rich Low_complexity Low_complexity 2 19 -51 1762 153 52 30 chr3 10881117 10881484 -216643094 + THE1C LTR MaLR 1 375 0 201 167 0 42 chr3 10881484 10881537 -216643041 + CT-rich Low_complexity Low_complexity 19 70 0 261 365 24 42 chr3 10882162 10882272 -216642306 - L2 LINE L2 -177 3095 2987 1681 232 20 22 chr3 10882272 10882780 -216641798 + Charlie4a DNA MER1_type 2 508 0 261 365 24 42 chr3 10882780 10882836 -216641742 - L2 LINE L2 -285 2987 2932 510 274 174 19 chr3 10882881 10883093 -216641485 - MIR SINE MIR -7 255 11 493 347 87 4 chr3 10883139 10883381 -216641197 - MIR SINE MIR 0 262 1 451 370 8 33 chr3 10883428 10883671 -216640907 - L2 LINE L2 -488 2826 2590 216 307 50 84 chr3 10884115 10884294 -216640284 + L3b LINE CR1 1405 1577 -6 273 182 61 0 chr3 10885219 10885285 -216639293 + L1MA3 LINE L1 6236 6305 0 748 318 39 26 chr3 10885428 10885815 -216638763 - MLT1K LTR MaLR -136 452 61 211 361 41 0 chr3 10885873 10885970 -216638608 - L3b LINE CR1 -182 1401 1301 291 45 23 0 chr3 10887331 10887375 -216637203 - MADE1 DNA Mariner -35 45 1 373 294 49 14 chr3 10887412 10887555 -216637023 - MIR SINE MIR -113 149 2 1413 183 183 67 chr3 10888335 10888353 -216636225 + MLT1F1 LTR MaLR 1 16 -551 6430 132 21 70 chr3 10888353 10889647 -216634931 - Tigger3b DNA MER2_type 0 1231 1 1413 183 183 67 chr3 10889647 10889814 -216634764 + MLT1F1 LTR MaLR 16 162 -405 1632 116 0 21 chr3 10889814 10890055 -216634523 - AluSq SINE Alu -77 236 1 1413 183 183 67 chr3 10890055 10890376 -216634202 + MLT1F1 LTR MaLR 162 567 0 253 370 131 24 chr3 10891510 10891790 -216632788 - L2 LINE L2 -269 3003 2695 228 210 48 0 chr3 10892094 10892156 -216632422 - MLT1I LTR MaLR -22 387 323 2361 80 0 46 chr3 10893677 10894002 -216630576 - AluSg SINE Alu 0 310 1 4133 196 31 5 chr3 10894796 10894994 -216629584 - L1MD2 LINE L1 -9 6350 6159 288 0 0 0 chr3 10894994 10895026 -216629552 + (TG)n Simple_repeat Simple_repeat 2 33 0 4133 196 31 5 chr3 10895026 10895717 -216628861 - L1MD2 LINE L1 -200 6159 5437 209 158 23 53 chr3 10895793 10895926 -216628652 + (TA)n Simple_repeat Simple_repeat 2 130 0 223 135 0 39 chr3 10896035 10896087 -216628491 + (TA)n Simple_repeat Simple_repeat 2 51 0 225 221 323 0 chr3 10896152 10896279 -216628299 - L1MDb LINE L1 -4244 2162 1995 621 191 104 22 chr3 10896291 10896503 -216628075 + L1MDb LINE L1 1398 1585 -4957 4425 246 61 36 chr3 10896504 10897645 -216626933 - L1MDb LINE L1 -4425 1981 827 2021 148 6 6 chr3 10897645 10897956 -216626622 - AluSx SINE Alu -1 311 1 4425 246 61 36 chr3 10897956 10898797 -216625781 - L1MDb LINE L1 -5579 827 8 29 28 0 0 chr3 10899341 10899377 -216625201 + AT_rich Low_complexity Low_complexity 1 36 0 383 250 37 28 chr3 10900473 10900581 -216623997 - L2 LINE L2 -6 3266 3158 244 333 85 0 chr3 10900611 10900740 -216623838 - L3 LINE CR1 -258 1319 1180 735 161 27 27 chr3 10900744 10900893 -216623685 - AluJo SINE Alu -163 149 1 1058 213 10 0 chr3 10900998 10901200 -216623378 - MER20 DNA MER1_type 0 219 16 503 221 139 67 chr3 10901351 10901559 -216623019 + MIR SINE MIR 40 262 0 345 82 0 0 chr3 10902019 10902068 -216622510 + (CA)n Simple_repeat Simple_repeat 1 49 0 265 345 16 54 chr3 10902799 10902984 -216621594 - MIR SINE MIR -51 211 34 1812 224 67 14 chr3 10903073 10903653 -216620925 + L1MCa LINE L1 982 1592 -4834 658 203 42 36 chr3 10903651 10903843 -216620735 + L1MC3 LINE L1 6911 7103 -682 * 262 286 0 0 chr3 10903843 10903927 -216620651 + MLT1F1 LTR MaLR 42 125 -442 477 206 0 103 chr3 10903927 10904082 -216620496 + L1MC3 LINE L1 7189 7327 -458 2204 128 0 0 chr3 10904114 10904412 -216620166 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr3 10904412 10904448 -216620130 + AT_rich Low_complexity Low_complexity 1 36 0 1368 180 30 51 chr3 10904448 10904821 -216619757 + L1MC3 LINE L1 7317 7681 -104 380 146 182 55 chr3 10904891 10905018 -216619560 + L1MC3 LINE L1 7643 7995 0 2269 86 0 38 chr3 10905031 10905375 -216619203 + AluY SINE Alu 1 332 0 896 286 49 9 chr3 10905404 10905753 -216618825 + L1MCa LINE L1 1887 2249 -4358 219 216 0 0 chr3 10906871 10906908 -216617670 + polypyrimidine Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 10906908 10906931 -216617647 + (T)n Simple_repeat Simple_repeat 1 23 0 345 327 33 20 chr3 10908155 10908305 -216616273 - MIR3 SINE MIR -10 198 47 3342 175 17 128 chr3 10909257 10909587 -216614991 + L1MC3 LINE L1 5338 5703 -2292 1207 63 0 0 chr3 10909587 10909745 -216614833 + L1PA5 LINE L1 5997 6154 0 3342 175 17 128 chr3 10909745 10910830 -216613748 + L1MC3 LINE L1 5703 6535 -1460 552 215 35 47 chr3 10910844 10911016 -216613562 + L1MC3 LINE L1 7125 7294 -491 983 217 105 43 chr3 10911026 10911330 -216613248 + MER2 DNA MER2_type 13 335 -10 220 389 22 0 chr3 10911541 10911631 -216612947 - L2 LINE L2 -45 3227 3136 814 152 8 37 chr3 10911773 10912013 -216612565 + MLT1A1 LTR MaLR 1 324 -41 834 239 143 71 chr3 10912365 10912813 -216611765 + MLT1J LTR MaLR 1 480 -31 2395 182 13 0 chr3 10913300 10913766 -216610812 - L1MC3 LINE L1 -10 7775 7304 1704 218 14 6 chr3 10914489 10914851 -216609727 + MLT1A1 LTR MaLR 1 365 0 621 263 33 16 chr3 10916430 10916772 -216607806 - LTR16A LTR ERVL -34 416 33 231 61 0 0 chr3 10917475 10917508 -216607070 + (TG)n Simple_repeat Simple_repeat 2 34 0 453 294 8 0 chr3 10918079 10918198 -216606380 + MLT1J2 LTR MaLR 65 184 -266 285 254 32 13 chr3 10918235 10918336 -216606242 + MLT1J2 LTR MaLR 302 450 0 654 332 46 11 chr3 10918351 10918631 -216605947 - L2 LINE L2 -1314 2000 1711 197 299 21 0 chr3 10918670 10918767 -216605811 + A-rich Low_complexity Low_complexity 6 104 0 237 300 10 0 chr3 10918768 10918868 -216605710 + (ATGGTG)n Simple_repeat Simple_repeat 4 104 0 239 326 7 0 chr3 10918879 10919026 -216605552 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 2822 119 0 14 chr3 10919580 10919775 -216604803 - L1PA14 LINE L1 -239 5922 5726 1980 154 30 16 chr3 10919775 10920145 -216604433 - THE1C LTR MaLR 0 375 1 2822 119 0 14 chr3 10920145 10920384 -216604194 - L1PA14 LINE L1 -435 5726 5494 1288 142 9 4 chr3 10920384 10920607 -216603971 + L1PA14 LINE L1 5934 6159 -2 416 273 136 6 chr3 10920749 10920925 -216603653 - L2 LINE L2 -101 3212 3014 1728 194 3 7 chr3 10920928 10921237 -216603341 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr3 10921247 10921270 -216603308 + AT_rich Low_complexity Low_complexity 1 23 0 1583 213 83 53 chr3 10921322 10921793 -216602785 - L1MC5 LINE L1 -304 7657 7159 909 188 21 11 chr3 10921793 10921979 -216602599 + MER5A DNA MER1_type 1 188 -1 1583 213 83 53 chr3 10921979 10922168 -216602410 - L1MC5 LINE L1 -802 7159 6977 446 258 73 13 chr3 10923144 10923424 -216601154 + LTR16A1 LTR ERVL 4 344 -113 344 205 0 24 chr3 10923568 10923651 -216600927 + MLT1K LTR MaLR 170 250 -338 794 178 74 35 chr3 10923721 10923952 -216600626 + MER96B DNA MER1_type? 1 240 -177 229 180 33 0 chr3 10923954 10924015 -216600563 + MLT1K LTR MaLR 353 415 -173 646 284 32 5 chr3 10925266 10925456 -216599122 + MIR SINE MIR 58 252 -10 226 311 107 0 chr3 10925501 10925604 -216598974 - L2 LINE L2 0 3272 3159 252 234 43 43 chr3 10926137 10926231 -216598347 - L2 LINE L2 -92 3221 3128 596 51 58 15 chr3 10926232 10926369 -216598209 + (TA)n Simple_repeat Simple_repeat 2 144 0 185 0 40 0 chr3 10926841 10926866 -216597712 + (TA)n Simple_repeat Simple_repeat 2 27 0 342 363 49 8 chr3 10926958 10927225 -216597353 - L2 LINE L2 -339 2975 2698 467 191 91 18 chr3 10928351 10928461 -216596117 - L2 LINE L2 0 3313 3196 331 245 98 10 chr3 10928506 10928608 -216595970 - MIR3 SINE MIR -31 177 67 498 342 101 17 chr3 10928630 10928867 -216595711 - MIR SINE MIR -4 258 2 243 300 14 71 chr3 10929228 10929368 -216595210 + MER69 DNA AcHobo 46 2526 0 280 291 19 16 chr3 10929394 10929514 -216595064 + MIR SINE MIR 27 144 -64 268 298 48 16 chr3 10929731 10929855 -216594723 - MLT1J LTR MaLR -147 364 237 854 193 133 0 chr3 10930127 10930293 -216594285 - MER5A DNA MER1_type 0 189 2 227 79 26 0 chr3 10930463 10930501 -216594077 + (TG)n Simple_repeat Simple_repeat 1 39 0 686 262 44 62 chr3 10931007 10931347 -216593231 + MER46C DNA MER2_type 1 334 -4 513 177 85 0 chr3 10931844 10931984 -216592594 - MER45A DNA AcHobo -17 161 1 212 326 34 22 chr3 10932812 10932901 -216591677 - MIR3 SINE MIR -7 201 112 257 153 0 17 chr3 10933390 10933449 -216591129 + (TAGG)n Simple_repeat Simple_repeat 1 58 0 1004 149 7 7 chr3 10933535 10933689 -216590889 + AluSq SINE Alu 140 293 -20 368 241 92 35 chr3 10934188 10934329 -216590249 + MIR3 SINE MIR 60 208 0 943 130 0 29 chr3 10934963 10935247 -216589331 + (GGAA)n Simple_repeat Simple_repeat 1 275 0 8739 20 0 2 chr3 10985559 10987264 -216537314 - L1PA3 LINE L1 -150 6005 4305 * 8786 31 4 0 chr3 10987261 10988366 -216536212 + L1PA3 LINE L1 3226 4334 -1812 859 228 6 6 chr3 10988491 10988662 -216535916 - MER5A DNA MER1_type -18 171 1 825 155 33 77 chr3 10988701 10988882 -216535696 - MER58A DNA MER1_type -4 220 48 228 316 38 30 chr3 10988926 10989059 -216535519 + L2 LINE L2 2930 3063 -209 277 293 67 71 chr3 10989079 10989318 -216535260 - L2 LINE L2 0 3313 3076 230 359 104 0 chr3 10989388 10989494 -216535084 + L2 LINE L2 3182 3298 -15 979 260 55 68 chr3 10989605 10990059 -216534519 - L2 LINE L2 0 3313 2866 1218 286 37 45 chr3 10990184 10990697 -216533881 + MLT1J LTR MaLR 3 511 0 267 235 66 52 chr3 10990896 10991032 -216533546 + LTR33 LTR ERVL 381 518 -3 206 71 0 71 chr3 10992080 10992122 -216532456 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 228 349 124 24 chr3 10992206 10992375 -216532203 + MIR SINE MIR 20 205 -57 2237 173 143 15 chr3 10992403 10992947 -216531631 - MER90 LTR ERV1 0 614 1 327 85 0 0 chr3 10993013 10993060 -216531518 + (TG)n Simple_repeat Simple_repeat 2 48 0 307 330 62 0 chr3 10993700 10993812 -216530766 - MIR3 SINE MIR -17 191 73 276 304 0 0 chr3 10993915 10993994 -216530584 + MIR SINE MIR 172 250 -12 208 275 46 10 chr3 10994269 10994368 -216530210 - MIR SINE MIR -62 146 47 30 83 0 0 chr3 10995244 10995316 -216529262 + AT_rich Low_complexity Low_complexity 1 72 0 1970 107 28 3 chr3 10995688 10996015 -216528563 - SVA Other Other -339 1047 713 219 69 0 0 chr3 10996584 10996613 -216527965 + (A)n Simple_repeat Simple_repeat 1 29 0 675 312 66 21 chr3 10996631 10997009 -216527569 + LTR67 LTR ERVL 7 401 -156 21 0 0 0 chr3 10997246 10997267 -216527311 + AT_rich Low_complexity Low_complexity 1 21 0 2465 219 43 25 chr3 10998544 10999328 -216525250 + L1ME1 LINE L1 5236 6031 -135 616 211 124 5 chr3 10999970 11000133 -216524445 - MER5A DNA MER1_type -1 188 4 239 216 201 43 chr3 11000442 11000581 -216523997 + MLT1H LTR MaLR 2 162 -387 1770 156 58 22 chr3 11000966 11001326 -216523252 + THE1C LTR MaLR 1 373 -2 1261 322 173 20 chr3 11002027 11003042 -216521536 - L2 LINE L2 -339 2975 1805 234 333 28 0 chr3 11003461 11003533 -216521045 + L2 LINE L2 3240 3313 0 944 271 0 5 chr3 11004959 11005180 -216519398 - MER58A DNA MER1_type -4 220 1 654 287 60 32 chr3 11005344 11005550 -216519028 + L2 LINE L2 2788 2998 -315 2407 84 0 7 chr3 11005550 11005858 -216518720 - AluY SINE Alu -5 306 1 654 287 60 32 chr3 11005858 11005909 -216518669 + L2 LINE L2 2998 3046 -267 328 233 233 6 chr3 11005920 11006092 -216518486 - LTR33A LTR ERVL -13 510 300 679 293 116 0 chr3 11006492 11006734 -216517844 + L2 LINE L2 3044 3313 0 1963 198 8 3 chr3 11007044 11007427 -216517151 - MLT1B LTR MaLR 0 390 6 459 0 0 0 chr3 11008341 11008392 -216516186 + (CA)n Simple_repeat Simple_repeat 1 51 0 557 205 43 109 chr3 11008451 11008661 -216515917 - MIR3 SINE MIR -9 199 4 311 339 24 8 chr3 11008755 11008879 -216515699 + MIR SINE MIR 18 143 -65 1315 199 19 69 chr3 11009104 11009481 -216515097 - MLT2D LTR ERVL 0 414 57 389 20 0 20 chr3 11010305 11010356 -216514222 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 419 296 124 70 chr3 11010367 11010836 -216513742 - L2 LINE L2 -2 3311 2818 6042 167 20 20 chr3 11011377 11013660 -216510918 - L1MA9 LINE L1 0 6312 4018 581 350 29 48 chr3 11013671 11013985 -216510593 - L2 LINE L2 -1 3271 2964 376 229 147 0 chr3 11014025 11014134 -216510444 + MER20 DNA MER1_type 1 125 -94 * 776 180 42 0 chr3 11014131 11014298 -216510280 + MER20 DNA MER1_type 46 219 0 771 176 42 185 chr3 11014541 11014996 -216509582 - MLT1B LTR MaLR 0 390 1 313 320 23 100 chr3 11015125 11015384 -216509194 + L2 LINE L2 2991 3229 -43 414 320 0 31 chr3 11016114 11016242 -216508336 - MER5A DNA MER1_type 0 189 66 317 257 40 10 chr3 11016392 11016493 -216508085 - MER5A DNA MER1_type -77 112 9 453 242 97 32 chr3 11017287 11017411 -216507167 + MIR SINE MIR 1 132 -130 363 315 130 9 chr3 11018306 11018522 -216506056 + MIR SINE MIR 15 256 -6 307 308 150 28 chr3 11019201 11019448 -216505130 + L2 LINE L2 2986 3262 -10 334 287 93 9 chr3 11019831 11019939 -216504639 - L3 LINE CR1 -2 1575 1459 225 189 0 0 chr3 11019989 11020026 -216504552 - L2 LINE L2 -15 3298 3262 188 258 17 166 chr3 11020077 11020180 -216504398 - L3 LINE CR1 -108 1469 1352 814 158 0 0 chr3 11020180 11020307 -216504271 - FLAM_C SINE Alu -6 127 1 188 258 17 166 chr3 11020307 11020498 -216504080 - L3 LINE CR1 -225 1352 1219 182 147 44 132 chr3 11020948 11021016 -216503562 + L2 LINE L2 3211 3272 0 434 284 102 0 chr3 11021286 11021462 -216503116 + MER117 DNA MER1_type 4 197 0 181 326 169 11 chr3 11021493 11021582 -216502996 - MIR3 SINE MIR -103 105 3 711 216 74 17 chr3 11022298 11022466 -216502112 + MIR SINE MIR 77 257 -5 768 126 69 25 chr3 11022466 11022594 -216501984 - L1MA8 LINE L1 -4 6287 6149 291 28 0 0 chr3 11022594 11022630 -216501948 + (TG)n Simple_repeat Simple_repeat 1 36 0 768 126 69 25 chr3 11022630 11022660 -216501918 - L1MA8 LINE L1 -142 6149 6122 1450 198 68 52 chr3 11024107 11024475 -216500103 + MLT1A2 LTR MaLR 1 374 0 21 0 0 0 chr3 11024697 11024718 -216499860 + AT_rich Low_complexity Low_complexity 1 21 0 1250 266 71 63 chr3 11025314 11026026 -216498552 + L2 LINE L2 2464 3186 -127 2379 97 0 0 chr3 11026026 11026326 -216498252 + AluSc SINE Alu 1 300 -9 1250 266 71 63 chr3 11026326 11026454 -216498124 + L2 LINE L2 3186 3312 -1 1252 206 0 0 chr3 11026529 11026747 -216497831 + AluJo SINE Alu 1 218 -94 28 29 0 0 chr3 11026889 11026924 -216497654 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 11027334 11027364 -216497214 + AT_rich Low_complexity Low_complexity 1 30 0 5885 138 14 33 chr3 11029222 11030563 -216494015 - L1MA5A LINE L1 -5 6292 4960 1992 259 62 72 chr3 11030570 11031460 -216493118 + L1ME1 LINE L1 752 1649 -4566 201 39 0 0 chr3 11031460 11031486 -216493092 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1992 259 62 72 chr3 11031486 11031953 -216492625 + L1ME1 LINE L1 1649 2119 -4096 2494 153 31 18 chr3 11031953 11032404 -216492174 - MSTB2 LTR MaLR 0 457 1 1992 259 62 72 chr3 11032404 11032989 -216491589 + L1ME1 LINE L1 2119 2710 -3505 257 293 0 0 chr3 11033058 11033140 -216491438 - L1ME1 LINE L1 -1200 5015 4934 2405 245 46 18 chr3 11033141 11034233 -216490345 + L1ME1 LINE L1 5039 6158 -77 186 206 0 0 chr3 11034296 11034364 -216490214 + A-rich Low_complexity Low_complexity 1 68 0 293 321 30 23 chr3 11034838 11034969 -216489609 - MLT1K LTR MaLR -285 303 172 2125 170 6 3 chr3 11035108 11035472 -216489106 + MLT1A1 LTR MaLR 1 365 0 2535 132 125 2 chr3 11035524 11035957 -216488621 - LTR12 LTR ERV1 -228 486 1 1022 284 78 50 chr3 11036207 11036729 -216487849 + MLT1K LTR MaLR 32 568 -20 258 251 120 41 chr3 11037157 11037302 -216487276 + MIR SINE MIR 17 172 -64 * 269 289 102 59 chr3 11037298 11037486 -216487092 + MIR3 SINE MIR 13 202 -60 231 318 11 11 chr3 11037686 11037774 -216486804 + MIR SINE MIR 20 107 -155 338 327 42 24 chr3 11037875 11038040 -216486538 - MIR SINE MIR -64 198 31 631 259 150 9 chr3 11038126 11038346 -216486232 - MIR SINE MIR -10 252 2 256 169 17 34 chr3 11038703 11038762 -216485816 + CT-rich Low_complexity Low_complexity 1 58 0 218 287 139 25 chr3 11039025 11039147 -216485431 - MIR SINE MIR -70 192 57 515 199 125 0 chr3 11039396 11039516 -216485062 + MIR SINE MIR 34 166 -62 695 269 30 15 chr3 11039604 11039805 -216484773 - MIR SINE MIR -55 207 4 928 160 43 5 chr3 11039820 11040007 -216484571 - MER20 DNA MER1_type 0 219 26 516 257 0 27 chr3 11040306 11040454 -216484124 + MER104 DNA Tc2 30 173 -7 422 233 275 0 chr3 11040586 11040706 -216483872 - MER91A DNA MER1_type -43 153 1 204 40 0 0 chr3 11040931 11040956 -216483622 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 702 235 37 0 chr3 11041607 11041769 -216482809 + MER58A DNA MER1_type 1 168 0 2054 139 72 31 chr3 11041772 11042260 -216482318 + MLT2A2 LTR ERVL 22 554 0 269 217 17 0 chr3 11042260 11042320 -216482258 + MER58A DNA MER1_type 164 224 0 2155 114 0 26 chr3 11042584 11042892 -216481686 + AluSx SINE Alu 1 300 -12 1560 242 79 23 chr3 11042935 11043414 -216481164 + MER41E LTR ERV1 7 512 0 1058 272 55 35 chr3 11043604 11044038 -216480540 - LTR16C LTR ERVL -5 486 44 633 322 74 27 chr3 11044755 11045162 -216479416 + MLT1K LTR MaLR 21 446 -142 535 316 105 39 chr3 11045302 11045634 -216478944 + L3 LINE CR1 911 1264 -313 371 82 14 0 chr3 11046137 11046200 -216478378 + Alu SINE Alu 243 297 -5 616 263 6 0 chr3 11046323 11046483 -216478095 - MER117 DNA MER1_type -36 161 1 2564 112 5 8 chr3 11047058 11047433 -216477145 - THE1C LTR MaLR 0 375 2 230 282 26 84 chr3 11047968 11048195 -216476383 - L2 LINE L2 0 3313 3100 296 24 24 0 chr3 11048248 11048289 -216476289 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 249 289 40 40 chr3 11048787 11048939 -216475639 + MLT1I LTR MaLR 83 234 -175 21 57 0 0 chr3 11049275 11049310 -216475268 + AT_rich Low_complexity Low_complexity 1 35 0 203 194 0 0 chr3 11049709 11049745 -216474833 + A-rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 11050092 11050118 -216474460 + AT_rich Low_complexity Low_complexity 1 26 0 202 194 28 0 chr3 11050292 11050364 -216474214 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 265 305 94 16 chr3 11054970 11055098 -216469480 + MIR3 SINE MIR 5 142 -66 577 235 148 31 chr3 11055344 11055540 -216469038 + MER58A DNA MER1_type 1 219 -5 214 369 45 36 chr3 11057012 11057123 -216467455 + L2 LINE L2 3153 3264 -8 277 271 187 19 chr3 11057178 11057285 -216467293 + L2 LINE L2 3147 3271 -1 264 274 0 0 chr3 11057364 11057437 -216467141 - MER58A DNA MER1_type -1 223 151 31117 108 14 28 chr3 11057437 11063650 -216460928 + L1PA7 LINE L1 26 6151 -3 465 290 43 32 chr3 11063650 11063718 -216460860 - MER58A DNA MER1_type -2232 188 122 3078 69 8 78 chr3 11063718 11064195 -216460383 + MLT2A1 LTR ERVL 1 444 0 465 290 43 32 chr3 11064195 11064312 -216460266 - MER58A DNA MER1_type -2298 122 1 228 111 0 0 chr3 11064560 11064596 -216459982 + (CA)n Simple_repeat Simple_repeat 1 36 0 1181 269 100 36 chr3 11064719 11065518 -216459060 + L1ME3A LINE L1 5291 6140 -30 868 247 119 39 chr3 11065679 11066116 -216458462 + MLT1G LTR MaLR 119 590 0 208 355 116 14 chr3 11066153 11066291 -216458287 - MIR SINE MIR -90 172 21 1623 211 14 14 chr3 11066300 11066665 -216457913 + MLT1A1 LTR MaLR 1 365 0 566 144 0 0 chr3 11066666 11066763 -216457815 + MLT1A1-int LTR MaLR 1 97 -1638 * 936 168 67 5 chr3 11066759 11066967 -216457611 + MLT-int LTR MaLR 1515 1735 0 192 361 107 8 chr3 11068621 11068743 -216455835 - L2 LINE L2 -47 3225 3092 524 242 97 98 chr3 11068801 11069168 -216455410 + MLT1J1 LTR MaLR 66 427 -19 270 0 0 0 chr3 11069207 11069237 -216455341 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 230 313 30 0 chr3 11069237 11069304 -216455274 - L2 LINE L2 -2 3311 3243 512 330 22 16 chr3 11069400 11069582 -216454996 - L2 LINE L2 -252 3061 2879 212 333 127 0 chr3 11070584 11070710 -216453868 + MIR3 SINE MIR 3 144 -64 1315 129 55 0 chr3 11070748 11070965 -216453613 + MER30 DNA MER1_type 2 230 0 1766 164 56 43 chr3 11070998 11071350 -216453228 + MLT2D LTR ERVL 1 347 -67 1679 192 75 21 chr3 11071350 11071725 -216452853 + MSTD LTR MaLR 1 395 -1 354 98 0 0 chr3 11071725 11071776 -216452802 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1766 164 56 43 chr3 11071776 11071818 -216452760 + MLT2D LTR ERVL 346 401 -13 265 326 0 11 chr3 11071827 11071916 -216452662 - L2 LINE L2 -27 3286 3199 2587 213 19 57 chr3 11071927 11072556 -216452022 + MER77 LTR ERV1 1 605 0 273 297 27 27 chr3 11072557 11072668 -216451910 - L2 LINE L2 -10 3303 3193 358 332 41 71 chr3 11072846 11073042 -216451536 + L3 LINE CR1 1020 1209 -368 1078 186 34 0 chr3 11073051 11073255 -216451323 + MER20 DNA MER1_type 3 213 -6 181 414 36 0 chr3 11073297 11073408 -216451170 + L3 LINE CR1 1392 1506 -71 22 56 0 0 chr3 11073653 11073689 -216450889 + AT_rich Low_complexity Low_complexity 1 36 0 544 255 28 49 chr3 11073781 11073843 -216450735 - MIR SINE MIR -61 147 85 1312 183 137 105 chr3 11073843 11074347 -216450231 - MLT2B1 LTR ERVL 0 520 1 544 255 28 49 chr3 11074347 11074468 -216450110 - MIR SINE MIR -123 85 9 504 299 148 2 chr3 11074752 11075170 -216449408 - LTR33 LTR ERVL -2 519 41 514 328 107 10 chr3 11075292 11075771 -216448807 + L1ME4a LINE L1 5503 6027 -94 10998 25 0 0 chr3 11076046 11078102 -216446476 + L1PA3 LINE L1 4097 6152 -3 25 0 0 0 chr3 11078103 11078128 -216446450 + AT_rich Low_complexity Low_complexity 1 25 0 241 287 128 0 chr3 11078509 11078603 -216445975 - MIR SINE MIR -63 145 40 2231 160 68 2 chr3 11078672 11079072 -216445506 + MSTB LTR MaLR 1 426 0 803 191 42 18 chr3 11079672 11079840 -216444738 - FRAM SINE Alu -5 171 1 4906 149 13 11 chr3 11079936 11080968 -216443610 + L1PB2 LINE L1 5118 6151 0 396 200 105 0 chr3 11081222 11081317 -216443261 + Tigger3(Golem) DNA MER2_type 3 107 -2922 269 116 0 0 chr3 11081320 11081363 -216443215 + Tigger3(Golem) DNA MER2_type 2286 2328 -701 2865 100 7 7 chr3 11081365 11081775 -216442803 + L1PB3 LINE L1 5745 6154 0 34 55 0 0 chr3 11082290 11082345 -216442233 + AT_rich Low_complexity Low_complexity 1 55 0 3879 111 65 2 chr3 11082345 11082956 -216441622 + Tigger3(Golem) DNA MER2_type 2378 3027 -2 503 54 68 0 chr3 11083222 11083296 -216441282 + L1PA13 LINE L1 6084 6162 -1 523 296 15 0 chr3 11083567 11083699 -216440879 - L2 LINE L2 0 3272 3139 229 183 100 17 chr3 11083793 11083853 -216440725 + LTR16A LTR ERVL 21 85 -365 1118 283 46 11 chr3 11083866 11084233 -216440345 + LTR16A LTR ERVL 57 436 -14 396 365 37 10 chr3 11084242 11084576 -216440002 - L2 LINE L2 -292 3021 2681 191 279 54 45 chr3 11084775 11084849 -216439729 - MIR SINE MIR -61 147 70 303 83 317 0 chr3 11084849 11084909 -216439669 + MADE1 DNA Mariner 2 80 0 191 279 54 45 chr3 11084909 11084945 -216439633 - MIR SINE MIR -138 70 36 297 0 0 0 chr3 11085785 11085818 -216438760 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1783 267 75 21 chr3 11086262 11086866 -216437712 - L1ME3A LINE L1 -18 6152 5517 3527 259 110 45 chr3 11086898 11088765 -216435813 - HAL1 LINE L1 -4 2503 514 226 236 121 86 chr3 11088926 11089027 -216435551 - LTR67 LTR ERVL -13 544 435 2209 61 0 4 chr3 11089027 11089289 -216435289 + AluSq SINE Alu 39 299 -14 226 236 121 86 chr3 11089289 11089327 -216435251 - LTR67 LTR ERVL -122 435 400 723 237 48 71 chr3 11089745 11090040 -216434538 - HAL1 LINE L1 -2186 321 34 1188 263 73 16 chr3 11090645 11091026 -216433552 + MLT1D LTR MaLR 1 403 -102 355 166 69 18 chr3 11091058 11091383 -216433195 + (TA)n Simple_repeat Simple_repeat 1 341 0 300 204 4 4 chr3 11091385 11091472 -216433106 + MLT1D LTR MaLR 447 505 0 3723 219 129 87 chr3 11091472 11092787 -216431791 + MLT1D-int LTR MaLR 1 1371 0 1289 208 52 117 chr3 11092787 11093325 -216431253 + MLT1D LTR MaLR 1 503 -2 236 250 80 71 chr3 11093431 11093543 -216431035 + MIR SINE MIR 54 166 -96 583 325 66 26 chr3 11093956 11094335 -216430243 + MARNA DNA Mariner 94 487 -99 446 270 8 24 chr3 11094392 11094518 -216430060 + MIR SINE MIR 28 151 -111 253 246 15 0 chr3 11094523 11094588 -216429990 + MER94 DNA DNA 4 69 -65 4001 150 18 10 chr3 11094590 11095415 -216429163 + Tigger3b DNA MER2_type 1 934 -297 1215 134 0 31 chr3 11095406 11095600 -216428978 + Tigger3b DNA MER2_type 1044 1231 -1 * 967 236 82 40 chr3 11096306 11096704 -216427874 - MER21B LTR ERV1 -123 808 407 428 256 97 102 chr3 11096715 11096888 -216427690 + L2 LINE L2 2368 2540 -774 1593 206 0 0 chr3 11096888 11097170 -216427408 + AluJo SINE Alu 6 287 -25 428 256 97 102 chr3 11097170 11097407 -216427171 + L2 LINE L2 2540 2776 -538 697 281 166 11 chr3 11097871 11098348 -216426230 + L2 LINE L2 2740 3304 -9 191 111 0 28 chr3 11098359 11098395 -216426183 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2278 115 0 0 chr3 11099044 11099349 -216425229 + AluY SINE Alu 1 305 -6 22 0 0 0 chr3 11099587 11099609 -216424969 + AT_rich Low_complexity Low_complexity 1 22 0 624 268 137 65 chr3 11101010 11101521 -216423057 + MLT1H1 LTR MaLR 5 552 -3 467 281 54 18 chr3 11101556 11101723 -216422855 + L2 LINE L2 2898 3070 -243 2054 164 53 14 chr3 11101996 11102412 -216422166 - MSTB1 LTR MaLR 0 432 1 1448 165 63 14 chr3 11102768 11102947 -216421631 - AluJo SINE Alu -8 304 104 2167 109 12 38 chr3 11102947 11103267 -216421311 - AluSp SINE Alu -1 312 1 1448 165 63 14 chr3 11103267 11103372 -216421206 - AluJo SINE Alu -208 104 6 280 189 14 81 chr3 11103857 11103888 -216420690 - L2 LINE L2 -1 3271 3239 2633 153 26 0 chr3 11103888 11104305 -216420273 + MSTA LTR MaLR 1 428 0 280 189 14 81 chr3 11104305 11104347 -216420231 - L2 LINE L2 -33 3239 3203 195 42 0 0 chr3 11104472 11104496 -216420082 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 212 233 0 70 chr3 11104528 11104614 -216419964 - L2 LINE L2 -75 3238 3159 221 247 37 0 chr3 11104756 11104837 -216419741 - L2 LINE L2 -265 3007 2924 569 182 147 65 chr3 11105902 11106072 -216418506 + LTR41 LTR ERVL 1 184 -589 365 267 127 76 chr3 11106352 11106527 -216418051 + LTR41 LTR ERVL 520 711 -62 918 195 13 49 chr3 11106527 11106753 -216417825 + MER20 DNA MER1_type 1 218 -1 365 267 127 76 chr3 11106753 11106813 -216417765 + LTR41 LTR ERVL 711 767 -6 249 77 77 0 chr3 11106781 11106820 -216417758 + LTR50 LTR ERVL 754 795 0 * 2419 83 3 6 chr3 11107254 11107568 -216417010 + AluSq SINE Alu 1 313 0 181 250 0 42 chr3 11107621 11107669 -216416909 + MER5A DNA MER1_type 44 89 -100 730 193 136 23 chr3 11107723 11107899 -216416679 - MER91A DNA MER1_type 0 196 1 220 287 183 17 chr3 11107981 11108096 -216416482 - L2 LINE L2 0 3272 3139 280 280 134 34 chr3 11108147 11108318 -216416260 - MIR SINE MIR -62 146 17 434 253 104 6 chr3 11108620 11108802 -216415776 + L2 LINE L2 3114 3313 0 234 336 0 19 chr3 11109218 11109325 -216415253 - MIR SINE MIR -64 144 40 833 224 39 24 chr3 11109521 11109726 -216414852 - MLT1H LTR MaLR 0 549 342 194 206 0 0 chr3 11109808 11109842 -216414736 + MIR SINE MIR 111 144 -64 764 282 53 0 chr3 11111103 11111330 -216413248 - MIR SINE MIR -22 240 2 300 312 0 0 chr3 11111552 11111645 -216412933 + MIR SINE MIR 170 262 0 396 40 0 0 chr3 11112418 11112468 -216412110 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1909 172 0 0 chr3 11112572 11112875 -216411703 - AluSx SINE Alu -7 305 3 305 203 51 38 chr3 11113121 11113200 -216411378 + MER116 DNA Mariner 1 80 0 213 324 0 15 chr3 11113202 11113270 -216411308 - MER5A DNA MER1_type -88 101 35 235 260 178 58 chr3 11113408 11113616 -216410962 + MLT1I LTR MaLR 171 403 -6 1884 253 29 35 chr3 11114245 11114795 -216409783 + MER74B LTR ERVL 76 622 0 234 143 0 79 chr3 11115481 11115544 -216409034 + L1MC4 LINE L1 6897 6954 -1088 649 193 17 0 chr3 11115545 11115664 -216408914 + MLT1D LTR MaLR 9 129 -376 1547 230 8 54 chr3 11115664 11116056 -216408522 + MLT1A2 LTR MaLR 1 374 0 * 1827 167 55 47 chr3 11116056 11116433 -216408145 + MLT1D LTR MaLR 125 504 -1 2176 206 129 24 chr3 11116435 11117072 -216407506 + L1MC3 LINE L1 6897 7600 -185 394 273 16 48 chr3 11117957 11118144 -216406434 + GA-rich Low_complexity Low_complexity 1 181 0 1931 172 27 6 chr3 11118674 11119011 -216405567 - MLT1A1 LTR MaLR 0 365 22 346 339 98 6 chr3 11119209 11119383 -216405195 - MIR SINE MIR -22 240 51 249 341 45 7 chr3 11119397 11119593 -216404985 + MIR SINE MIR 49 253 -9 242 200 0 0 chr3 11120386 11120431 -216404147 - MIR SINE MIR -108 154 110 226 347 0 0 chr3 11120457 11120532 -216404046 - MIR SINE MIR -1 261 187 1288 190 26 15 chr3 11120623 11121051 -216403527 + MLT1C LTR MaLR 1 462 -5 223 287 126 11 chr3 11121174 11121261 -216403317 - MIR SINE MIR -112 150 54 2455 84 0 0 chr3 11121290 11121588 -216402990 + AluY SINE Alu 1 298 -13 234 150 0 0 chr3 11121648 11121688 -216402890 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 250 60 0 chr3 11122330 11122430 -216402148 + L2 LINE L2 3206 3311 -2 243 237 17 0 chr3 11122657 11122716 -216401862 + Charlie7 DNA MER1_type 46 105 -2507 2299 99 0 0 chr3 11122904 11123228 -216401350 - AluSx SINE Alu 0 312 1 1564 156 136 161 chr3 11123942 11124177 -216400401 + LTR64 LTR ERVK 1 240 -318 6118 91 18 21 chr3 11124177 11125377 -216399201 + SVA Other Other 1 868 -592 1564 156 136 161 chr3 11125377 11125390 -216399188 + LTR64 LTR ERVK 240 252 -306 6926 58 6 67 chr3 11125390 11126406 -216398172 + SVA Other Other 433 1386 0 1564 156 136 161 chr3 11126406 11126692 -216397886 + LTR64 LTR ERVK 252 525 -33 2036 118 3 36 chr3 11126692 11126998 -216397580 + AluSx SINE Alu 1 296 -16 1564 156 136 161 chr3 11126998 11127032 -216397546 + LTR64 LTR ERVK 525 558 0 430 284 44 22 chr3 11127580 11127763 -216396815 - MIR SINE MIR -70 192 6 1482 176 31 0 chr3 11128742 11129031 -216395547 + MER33 DNA MER1_type 27 324 0 742 199 239 2 chr3 11129922 11130190 -216394388 - MER2 DNA MER2_type -6 339 10 211 210 0 48 chr3 11130267 11130329 -216394249 + MIR SINE MIR 92 150 -112 352 368 56 7 chr3 11130490 11130759 -216393819 - L3 LINE CR1 -561 1016 735 604 296 39 17 chr3 11130779 11130958 -216393620 + MER5A DNA MER1_type 1 183 -6 352 305 117 0 chr3 11130993 11131147 -216393431 + MER5A DNA MER1_type 18 189 0 782 229 6 28 chr3 11131171 11131350 -216393228 - MER5A DNA MER1_type -6 183 9 4494 187 45 13 chr3 11131482 11132397 -216392181 - L1MB5 LINE L1 -10 6164 5221 127 57 0 0 chr3 11132397 11132608 -216391970 + AT_rich Low_complexity Low_complexity 1 211 0 207 262 20 27 chr3 11132613 11132762 -216391816 + (TTTAA)n Simple_repeat Simple_repeat 1 148 0 22 80 0 0 chr3 11132768 11132818 -216391760 + AT_rich Low_complexity Low_complexity 1 50 0 2982 15 0 6 chr3 11133499 11133837 -216390741 + L1PA3 LINE L1 5819 6154 -1 24 32 0 0 chr3 11133837 11133868 -216390710 + AT_rich Low_complexity Low_complexity 1 31 0 2857 80 6 0 chr3 11135035 11135396 -216389182 - THE1B LTR MaLR -1 363 1 857 204 104 15 chr3 11135953 11136154 -216388424 + MER20 DNA MER1_type 1 219 0 832 223 97 17 chr3 11136420 11136658 -216387920 + LTR16A1 LTR ERVL 201 457 0 380 183 12 12 chr3 11137462 11137544 -216387034 - MER3 DNA MER1_type -5 204 123 235 259 141 15 chr3 11137544 11137679 -216386899 + MIR3 SINE MIR 53 204 -4 891 257 147 7 chr3 11137844 11138136 -216386442 + LTR16A LTR ERVL 118 450 0 428 301 97 5 chr3 11138231 11138437 -216386141 - MIR SINE MIR -2 260 36 225 192 39 0 chr3 11138757 11138809 -216385769 + (CA)n Simple_repeat Simple_repeat 1 54 0 441 242 258 0 chr3 11138839 11139021 -216385557 - MIR SINE MIR -21 241 13 280 293 13 0 chr3 11139145 11139220 -216385358 + GA-rich Low_complexity Low_complexity 4 79 0 455 264 121 0 chr3 11139416 11139556 -216385022 - MIR SINE MIR -34 228 72 203 304 0 18 chr3 11139655 11139711 -216384867 + MIR3 SINE MIR 15 69 -139 238 237 9 18 chr3 11139815 11139929 -216384649 + (TAG)n Simple_repeat Simple_repeat 2 114 0 286 156 31 0 chr3 11139981 11140045 -216384533 + GA-rich Low_complexity Low_complexity 3 68 0 530 298 0 6 chr3 11140047 11140228 -216384350 + (TAG)n Simple_repeat Simple_repeat 1 180 0 288 306 69 14 chr3 11140311 11140455 -216384123 - MIR SINE MIR -7 255 104 449 309 22 22 chr3 11141033 11141214 -216383364 - MIR SINE MIR -50 212 32 440 327 35 80 chr3 11141425 11141826 -216382752 - L2 LINE L2 0 3272 2890 282 233 14 27 chr3 11142348 11142421 -216382157 - MLT1L LTR MaLR -115 500 429 2023 93 0 0 chr3 11142745 11143004 -216381574 + AluY SINE Alu 42 300 -11 212 209 0 0 chr3 11143019 11143062 -216381516 + L2 LINE L2 3265 3307 -6 231 325 8 48 chr3 11143136 11143262 -216381316 - MLT1K LTR MaLR -13 575 455 442 284 0 0 chr3 11144263 11144379 -216380199 + L2 LINE L2 2932 3047 -266 572 254 89 24 chr3 11144799 11145012 -216379566 + MIR SINE MIR 3 229 -33 209 361 57 0 chr3 11145063 11145185 -216379393 + L2 LINE L2 3139 3267 -5 242 200 0 0 chr3 11146857 11146907 -216377671 + (CA)n Simple_repeat Simple_repeat 1 50 0 293 324 37 9 chr3 11147374 11147482 -216377096 + L2 LINE L2 2937 3047 -225 489 181 0 11 chr3 11147815 11147909 -216376669 - MIR SINE MIR -44 218 126 934 285 90 0 chr3 11148000 11148288 -216376290 + MLT1I LTR MaLR 93 406 -3 185 352 76 52 chr3 11148291 11148745 -216375833 + L2 LINE L2 2370 2843 -471 2026 97 10 28 chr3 11148745 11149035 -216375543 - AluSg SINE Alu -22 288 4 185 352 76 52 chr3 11149035 11149174 -216375404 + L2 LINE L2 2843 2977 -337 198 392 58 0 chr3 11149359 11149479 -216375099 + L2 LINE L2 3146 3272 0 389 269 13 12 chr3 11150186 11150327 -216374251 + MIR SINE MIR 2 147 -61 356 294 7 20 chr3 11150692 11150838 -216373740 + MIR SINE MIR 107 250 -12 768 154 14 1 chr3 11150879 11151027 -216373551 - L1P4 LINE L1 -526 5635 5483 851 247 16 6 chr3 11151027 11151209 -216373369 - MER63A DNA MER1_type -25 185 2 345 361 0 15 chr3 11151212 11151345 -216373233 - MIR SINE MIR -113 149 19 744 260 100 9 chr3 11151472 11151703 -216372875 - MIR SINE MIR -10 252 1 961 272 79 14 chr3 11152148 11152869 -216371709 + L2 LINE L2 2546 3313 0 598 148 61 43 chr3 11153135 11153250 -216371328 + MLT1E LTR MaLR 40 156 -437 635 167 0 18 chr3 11153250 11153364 -216371214 + MLT1E LTR MaLR 482 593 0 972 228 11 0 chr3 11154686 11154870 -216369708 + MER5A DNA MER1_type 3 188 -1 469 274 73 40 chr3 11155080 11155448 -216369130 + MLT1H LTR MaLR 25 376 -33 572 273 75 11 chr3 11156586 11156773 -216367805 - MIR SINE MIR -18 244 46 545 272 126 5 chr3 11156890 11157081 -216367497 - MIR SINE MIR -43 219 6 228 35 0 0 chr3 11157467 11157496 -216367082 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 554 285 40 64 chr3 11157665 11157963 -216366615 + MLT1K LTR MaLR 10 300 -288 1749 175 31 3 chr3 11158596 11158882 -216365696 + AluJo SINE Alu 1 294 -18 767 273 13 4 chr3 11159066 11159293 -216365285 + MIR SINE MIR 34 262 0 497 248 5 74 chr3 11159497 11159590 -216364988 - MIR SINE MIR -21 241 143 2817 170 8 0 chr3 11159590 11160079 -216364499 + L1MB3 LINE L1 5690 6182 -1 497 248 5 74 chr3 11160079 11160204 -216364374 - MIR SINE MIR -119 143 39 251 337 0 0 chr3 11160972 11161058 -216363520 - L2 LINE L2 -35 3237 3152 287 276 23 0 chr3 11161078 11161165 -216363413 + MIR SINE MIR 117 205 -57 545 308 89 0 chr3 11161192 11161406 -216363172 - MIR SINE MIR -26 236 4 741 253 138 39 chr3 11162339 11162852 -216361726 - MLT1G1 LTR MaLR 0 595 8 368 213 33 18 chr3 11162862 11162992 -216361586 - MIR SINE MIR -61 147 13 281 163 0 0 chr3 11162993 11163042 -216361536 + L2 LINE L2 3264 3312 -1 2986 6 0 0 chr3 11163067 11163383 -216361195 - AluYb8 SINE Alu -2 316 1 485 30 167 0 chr3 11163514 11163580 -216360998 + MADE1 DNA Mariner 4 80 0 219 298 53 26 chr3 11163985 11164099 -216360479 + MIR SINE MIR 37 153 -109 521 236 91 55 chr3 11164114 11164157 -216360421 + L1ME3A LINE L1 5257 5297 -865 2700 102 8 0 chr3 11164157 11164518 -216360060 - THE1B LTR MaLR 0 364 1 521 236 91 55 chr3 11164518 11164783 -216359795 + L1ME3A LINE L1 5297 5576 -586 437 270 18 108 chr3 11164787 11165065 -216359513 + L1ME3A LINE L1 5685 5937 -233 2322 105 53 14 chr3 11166203 11166564 -216358014 - THE1C LTR MaLR 0 375 1 206 211 56 70 chr3 11166683 11166754 -216357824 + L3 LINE CR1 1370 1439 -138 491 246 8 24 chr3 11167113 11167239 -216357339 + L2 LINE L2 3190 3313 0 521 258 160 24 chr3 11167970 11168183 -216356395 - MIR SINE MIR -19 243 2 442 222 50 4 chr3 11168855 11168995 -216355583 + MER5A DNA MER1_type 4 178 0 203 327 20 20 chr3 11168996 11169097 -216355481 + MER5A DNA MER1_type 86 186 -3 360 0 0 0 chr3 11169451 11169491 -216355087 + (CA)n Simple_repeat Simple_repeat 2 41 0 779 288 105 27 chr3 11169544 11169778 -216354800 + L2 LINE L2 2496 2710 -604 1733 204 101 40 chr3 11169778 11170253 -216354325 - MLT1D LTR MaLR 0 505 2 779 288 105 27 chr3 11170253 11170456 -216354122 + L2 LINE L2 2710 2967 -347 532 203 17 51 chr3 11171134 11171252 -216353326 - MER81 DNA DNA 0 114 1 887 282 80 26 chr3 11171262 11171736 -216352842 - MER115 DNA AcHobo -4 689 148 231 155 52 52 chr3 11172299 11172357 -216352221 - MER113 DNA MER1_type? -432 89 32 381 290 23 78 chr3 11172386 11172542 -216352036 + MIR SINE MIR 48 190 -72 2375 82 7 0 chr3 11172542 11172835 -216351743 + AluY SINE Alu 1 295 -16 381 290 23 78 chr3 11172835 11172895 -216351683 + MIR SINE MIR 190 252 -10 207 233 33 0 chr3 11172903 11172963 -216351615 + (TAG)n Simple_repeat Simple_repeat 3 64 0 2815 86 6 0 chr3 11173019 11173381 -216351197 + THE1B LTR MaLR 1 364 0 727 253 18 22 chr3 11174444 11174673 -216349905 + MIR SINE MIR 35 262 0 188 311 87 19 chr3 11174871 11174974 -216349604 + L2 LINE L2 3203 3312 -1 2139 25 0 0 chr3 11175888 11176126 -216348452 - AluY SINE Alu -13 298 61 180 354 142 0 chr3 11176221 11176334 -216348244 - MIR SINE MIR -16 246 118 425 249 33 106 chr3 11176577 11176822 -216347756 + L3 LINE CR1 1271 1497 -80 286 392 54 5 chr3 11177113 11177317 -216347261 - MIR SINE MIR -29 233 20 487 282 45 6 chr3 11178190 11178346 -216346232 + MIR SINE MIR 30 191 -71 191 195 218 0 chr3 11179242 11179329 -216345249 - MIR SINE MIR -122 140 35 615 228 98 31 chr3 11179665 11179977 -216344601 - LTR33 LTR ERVL -142 379 5 358 245 66 0 chr3 11180085 11180191 -216344387 + MIR SINE MIR 76 188 -74 1145 224 84 45 chr3 11180620 11181192 -216343386 - MLT1E1 LTR MaLR 0 654 1 255 274 0 60 chr3 11182142 11182226 -216342352 + MIR SINE MIR 36 114 -94 292 170 0 0 chr3 11182411 11182458 -216342120 + MER3 DNA MER1_type 41 87 -122 1238 210 33 16 chr3 11182470 11182775 -216341803 + MER33 DNA MER1_type 15 324 0 622 305 103 42 chr3 11182790 11183307 -216341271 + L2 LINE L2 2755 3301 -12 334 339 26 2 chr3 11183469 11183596 -216340982 + MIR SINE MIR 2 131 -77 264 375 0 0 chr3 11183695 11183783 -216340795 + L2 LINE L2 3185 3272 0 1635 144 56 32 chr3 11184690 11184881 -216339697 + L1MA4 LINE L1 5950 6154 -146 2140 129 0 0 chr3 11184881 11185190 -216339388 + AluSx SINE Alu 1 309 -3 1635 144 56 32 chr3 11185190 11185338 -216339240 + L1MA4 LINE L1 6154 6297 -3 210 272 148 12 chr3 11185357 11185438 -216339140 - L2 LINE L2 -1 3312 3221 300 253 44 82 chr3 11187378 11187536 -216337042 + L1MCa LINE L1 1947 2098 -4328 221 22 87 0 chr3 11187540 11187586 -216336992 + (TA)n Simple_repeat Simple_repeat 2 51 0 363 44 0 0 chr3 11187730 11187775 -216336803 + (CA)n Simple_repeat Simple_repeat 2 46 0 209 291 196 7 chr3 11187989 11188137 -216336441 - MIR3 SINE MIR -7 201 26 * 296 259 59 85 chr3 11188096 11188267 -216336311 + MIR SINE MIR 31 197 -53 211 203 203 13 chr3 11188717 11188796 -216335782 + L2 LINE L2 3158 3251 -21 211 259 290 0 chr3 11189698 11189829 -216334749 - MIR3 SINE MIR -4 204 36 677 266 55 37 chr3 11190045 11190263 -216334315 + MIR SINE MIR 17 238 -24 336 319 106 50 chr3 11190537 11190697 -216333881 - MIR3 SINE MIR -6 202 34 374 285 81 24 chr3 11192859 11192982 -216331596 - MIR3 SINE MIR -67 141 12 189 321 18 0 chr3 11193725 11193781 -216330797 - MIR3 SINE MIR -23 185 129 390 341 101 14 chr3 11194092 11194309 -216330269 + MIR SINE MIR 17 252 -10 401 343 0 0 chr3 11194634 11194736 -216329842 - L2 LINE L2 0 3272 3171 1420 225 78 0 chr3 11195604 11196013 -216328565 + Charlie4a DNA MER1_type 8 448 -60 201 300 17 0 chr3 11196089 11196149 -216328429 + (CA)n Simple_repeat Simple_repeat 2 62 0 380 289 38 44 chr3 11196149 11196308 -216328270 + MIR SINE MIR 5 162 -100 370 296 9 26 chr3 11196650 11196765 -216327813 - L2 LINE L2 -171 3101 2989 597 274 16 12 chr3 11197941 11198124 -216326454 - MIR3 SINE MIR -23 185 6 413 319 48 16 chr3 11198127 11198315 -216326263 - L3 LINE CR1 -72 1505 1312 268 149 106 53 chr3 11198990 11199084 -216325494 + L1ME2 LINE L1 5148 5246 -900 217 245 0 0 chr3 11199199 11199248 -216325330 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 213 65 0 0 chr3 11199257 11199288 -216325290 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3085 256 40 9 chr3 11199300 11200164 -216324414 + L1ME2 LINE L1 5255 6145 -19 190 222 0 0 chr3 11202105 11202141 -216322437 - L2 LINE L2 -21 3251 3216 328 317 92 0 chr3 11202165 11202285 -216322293 - MIR SINE MIR -112 150 20 1776 146 78 7 chr3 11202317 11202626 -216321952 + MER46B DNA MER2_type 31 236 0 936 244 69 19 chr3 11202657 11202977 -216321601 - MER113 DNA MER1_type? 0 521 186 403 279 34 78 chr3 11203128 11203307 -216321271 - MIR SINE MIR -46 216 46 628 187 32 16 chr3 11204198 11204321 -216320257 - L2 LINE L2 -13 3300 3176 210 71 0 0 chr3 11204904 11204932 -216319646 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 210 105 0 0 chr3 11205070 11205108 -216319470 + (TG)n Simple_repeat Simple_repeat 2 39 0 33 0 0 0 chr3 11207958 11207991 -216316587 + AT_rich Low_complexity Low_complexity 1 33 0 249 182 0 0 chr3 11208495 11208550 -216316028 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 32 0 0 chr3 11209252 11209283 -216315295 - L1MA3 LINE L1 -1 6304 6274 180 0 0 0 chr3 11209363 11209383 -216315195 + (A)n Simple_repeat Simple_repeat 1 20 0 4265 115 78 29 chr3 11209766 11209844 -216314734 - L1MA9 LINE L1 0 6312 6239 186 43 0 0 chr3 11209844 11209867 -216314711 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1643 175 4 0 chr3 11209867 11210147 -216314431 - AluJo SINE Alu -31 281 1 4265 115 78 29 chr3 11210147 11210561 -216314017 - L1MA9 LINE L1 -73 6239 5767 249 119 0 0 chr3 11210561 11210603 -216313975 + (TG)n Simple_repeat Simple_repeat 1 42 0 4265 115 78 29 chr3 11210603 11210862 -216313716 - L1MA9 LINE L1 -545 5767 5522 681 254 6 6 chr3 11210942 11211119 -216313459 - MER5B DNA MER1_type -1 177 1 313 292 52 0 chr3 11211131 11211227 -216313351 + MER5A DNA MER1_type 5 105 -84 195 284 27 68 chr3 11211465 11211539 -216313039 + MIR SINE MIR 5 75 -187 201 281 129 76 chr3 11211644 11211712 -216312866 + MIR SINE MIR 83 146 -116 853 183 56 6 chr3 11211712 11211892 -216312686 - MER5A DNA MER1_type 0 189 1 201 281 129 76 chr3 11211892 11211994 -216312584 + MIR SINE MIR 146 262 0 778 208 62 6 chr3 11212195 11212373 -216312205 + MIR SINE MIR 74 261 -1 233 264 7 81 chr3 11212488 11212636 -216311942 + MIR SINE MIR 92 228 -34 1079 263 80 65 chr3 11212928 11213376 -216311202 - LTR37B LTR ERV1 -4 464 10 1414 163 0 27 chr3 11213393 11213650 -216310928 - AluJo SINE Alu -54 258 9 186 338 0 27 chr3 11213783 11213857 -216310721 - MIR SINE MIR -118 90 19 305 332 73 44 chr3 11215021 11215226 -216309352 - MIR SINE MIR -20 242 32 268 336 17 42 chr3 11215422 11215541 -216309037 - MIR3 SINE MIR -50 158 43 183 42 0 0 chr3 11215555 11215579 -216308999 + (CTCTG)n Simple_repeat Simple_repeat 4 27 0 198 331 121 0 chr3 11216397 11216521 -216308057 + L2 LINE L2 2905 3043 -229 359 236 111 76 chr3 11216647 11216791 -216307787 - MIR SINE MIR -105 157 9 245 248 220 46 chr3 11216860 11216969 -216307609 + L2 LINE L2 3139 3266 -6 338 293 229 7 chr3 11217122 11217262 -216307316 - MER5A DNA MER1_type -6 183 13 229 250 83 0 chr3 11218572 11218656 -216305922 + MER91C DNA MER1_type 50 140 0 342 296 167 6 chr3 11218841 11219003 -216305575 - MIR SINE MIR -71 191 4 243 323 0 0 chr3 11219093 11219158 -216305420 - L3 LINE CR1 -22 1555 1491 197 325 267 8 chr3 11219210 11219330 -216305248 - L3 LINE CR1 -197 1380 1230 518 226 43 24 chr3 11219392 11219556 -216305022 - L1MEc LINE L1 -6210 186 20 30 0 0 0 chr3 11220464 11220494 -216304084 + AT_rich Low_complexity Low_complexity 1 30 0 304 253 40 30 chr3 11220658 11220757 -216303821 - MER103 DNA DNA -59 107 8 1109 176 23 19 chr3 11220969 11221185 -216303393 - MER20 DNA MER1_type -1 218 2 1145 210 5 0 chr3 11221813 11222018 -216302560 - MER58A DNA MER1_type 0 224 19 252 328 70 23 chr3 11222725 11222853 -216301725 + MIR3 SINE MIR 52 185 -23 184 238 89 59 chr3 11223145 11223246 -216301332 - MIR SINE MIR -72 136 33 * 290 348 63 13 chr3 11223193 11223351 -216301227 + MER5B DNA MER1_type 13 178 0 274 307 13 0 chr3 11223416 11223491 -216301087 - MER5A DNA MER1_type -88 101 26 270 284 60 82 chr3 11223618 11223862 -216300716 + L2 LINE L2 2789 3032 -240 185 364 13 0 chr3 11223945 11224022 -216300556 + L2 LINE L2 3207 3284 -29 268 289 29 19 chr3 11224055 11224159 -216300419 + MER5C DNA MER1_type 1 105 -219 497 288 6 34 chr3 11224358 11224574 -216300004 + G-rich Low_complexity Low_complexity 1 209 0 5725 87 20 26 chr3 11224633 11225950 -216298628 + SVA Other Other 1 868 -520 6600 64 9 63 chr3 11225997 11227364 -216297214 + SVA Other Other 433 1386 0 1079 171 243 59 chr3 11227364 11227650 -216296928 + LTR64 LTR ERVK 179 532 -26 1915 118 3 36 chr3 11227650 11227956 -216296622 + AluSx SINE Alu 1 296 -16 1079 171 243 59 chr3 11227956 11227990 -216296588 + LTR64 LTR ERVK 532 558 0 509 262 49 27 chr3 11228537 11228720 -216295858 - MIR SINE MIR -70 192 6 1477 176 31 0 chr3 11229699 11229988 -216294590 + MER33 DNA MER1_type 27 324 0 1542 109 5 0 chr3 11230219 11230439 -216294139 - AluSg SINE Alu -89 221 1 399 21 0 0 chr3 11232208 11232256 -216292322 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1675 44 5 0 chr3 11232257 11232461 -216292117 - L1PA5 LINE L1 -17 6137 5933 1142 44 0 0 chr3 11232461 11232597 -216291981 + L1PA5 LINE L1 5806 5941 -213 801 268 20 45 chr3 11232742 11232988 -216291590 - MIR SINE MIR -11 251 12 240 269 65 11 chr3 11233165 11233258 -216291320 - MIR SINE MIR -48 214 117 508 281 70 5 chr3 11233274 11233459 -216291119 - MER117 DNA MER1_type 0 197 1 2307 81 3 0 chr3 11233684 11233980 -216290598 + AluSq SINE Alu 1 297 -16 251 122 0 0 chr3 11234240 11234281 -216290297 + MER117 DNA MER1_type 50 90 -107 1664 144 47 23 chr3 11234419 11234718 -216289860 - AluSx SINE Alu -6 306 1 1016 209 62 0 chr3 11235121 11235346 -216289232 + MIR SINE MIR 21 259 -3 887 85 8 0 chr3 11235795 11235925 -216288653 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 1258 180 117 8 chr3 11235925 11236181 -216288397 - AluJo SINE Alu -17 285 2 420 210 100 0 chr3 11236194 11236294 -216288284 + MER5A DNA MER1_type 72 181 -8 416 303 66 20 chr3 11236618 11236770 -216287808 - MIR3 SINE MIR -34 174 16 400 281 42 62 chr3 11237998 11238190 -216286388 + MER5A DNA MER1_type 1 188 -1 1839 113 25 21 chr3 11238270 11238576 -216286002 + AluSg SINE Alu 1 307 0 1257 104 95 54 chr3 11238599 11238820 -216285758 + MER30 DNA MER1_type 1 230 0 391 265 102 18 chr3 11238843 11239009 -216285569 - MIR SINE MIR -76 186 7 346 334 0 6 chr3 11239917 11239933 -216284645 - L1ME3 LINE L1 -1 6163 6148 2029 156 3 44 chr3 11239933 11240027 -216284551 - MER7A DNA MER2_type -2692 346 250 2206 68 24 3 chr3 11240027 11240320 -216284258 + AluY SINE Alu 1 299 -12 2029 156 3 44 chr3 11240320 11240585 -216283993 - MER7A DNA MER2_type -2788 250 4 346 334 0 6 chr3 11240585 11240699 -216283879 - L1ME3 LINE L1 -16 6148 6038 454 333 155 34 chr3 11241429 11241841 -216282737 - L2 LINE L2 0 3272 2811 2649 129 39 5 chr3 11242056 11242468 -216282110 - MSTC LTR MaLR 0 428 3 441 274 108 21 chr3 11243773 11243959 -216280619 - MIR SINE MIR -11 251 50 301 263 0 26 chr3 11244780 11244856 -216279722 + MER103 DNA DNA 24 97 -69 690 204 99 0 chr3 11244866 11245018 -216279560 - MER5A DNA MER1_type -22 167 1 200 83 28 0 chr3 11245140 11245154 -216279424 + (TATG)n Simple_repeat Simple_repeat 4 16 -24 2014 68 0 0 chr3 11245154 11245404 -216279174 - AluY SINE Alu -26 285 36 200 83 28 0 chr3 11245404 11245425 -216279153 + (TATG)n Simple_repeat Simple_repeat 16 40 0 759 163 0 7 chr3 11246456 11246591 -216277987 - FRAM SINE Alu -8 168 35 278 277 11 21 chr3 11246591 11246685 -216277893 - MIR SINE MIR -65 197 105 216 0 0 0 chr3 11248133 11248157 -216276421 + (T)n Simple_repeat Simple_repeat 1 24 0 1158 199 4 13 chr3 11248189 11248415 -216276163 - MER58A DNA MER1_type 0 224 1 383 285 69 49 chr3 11248531 11248675 -216275903 - MIR SINE MIR -12 250 104 363 213 27 0 chr3 11248676 11248751 -216275827 - MER112 DNA MER1_type -6 254 178 213 39 0 0 chr3 11248820 11248846 -216275732 + (TG)n Simple_repeat Simple_repeat 2 27 0 194 361 36 12 chr3 11248911 11248994 -216275584 - MIR SINE MIR -95 113 29 266 296 112 24 chr3 11249428 11249553 -216275025 - MIR3 SINE MIR -70 138 3 705 286 143 36 chr3 11250136 11250660 -216273918 - MLT1G LTR MaLR 0 590 11 749 147 92 65 chr3 11251257 11251441 -216273137 + MER5A DNA MER1_type 1 189 0 226 350 42 33 chr3 11251652 11251772 -216272806 + MIR3 SINE MIR 42 162 -46 651 235 136 0 chr3 11251818 11251980 -216272598 - MIR SINE MIR -65 197 14 845 154 0 0 chr3 11252539 11252669 -216271909 + AluJo SINE Alu 6 135 -177 1081 210 147 52 chr3 11253629 11253977 -216270601 - MER58D DNA MER1_type -3 383 3 437 329 0 22 chr3 11254005 11254142 -216270436 + MIR SINE MIR 20 153 -109 309 288 34 68 chr3 11254878 11255024 -216269554 + MIR SINE MIR 52 192 -70 667 233 71 60 chr3 11255048 11255314 -216269264 + L2 LINE L2 3028 3296 -17 428 359 114 19 chr3 11255510 11255825 -216268753 - L2 LINE L2 -14 3258 2914 264 359 55 7 chr3 11255825 11255970 -216268608 - L2 LINE L2 0 3272 3121 3371 164 84 0 chr3 11256047 11256681 -216267897 + L1MC3 LINE L1 7080 7766 -19 1701 166 0 4 chr3 11256696 11256974 -216267604 - AluJo SINE Alu -27 285 9 31 0 0 0 chr3 11256982 11257013 -216267565 + AT_rich Low_complexity Low_complexity 1 31 0 2835 176 30 23 chr3 11257017 11257626 -216266952 + Charlie1 DNA MER1_type 2149 2761 0 634 194 2 70 chr3 11257637 11257810 -216266768 - MIR SINE MIR -64 144 35 298 271 85 29 chr3 11258185 11258319 -216266259 + MIR SINE MIR 101 243 -19 517 275 77 47 chr3 11258328 11258561 -216266017 + MIR SINE MIR 23 262 0 246 169 0 51 chr3 11258570 11258629 -216265949 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 242 353 139 0 chr3 11258729 11258851 -216265727 - L3 LINE CR1 -114 1463 1325 321 307 31 55 chr3 11258980 11259143 -216265435 - MIR SINE MIR 0 262 104 791 293 4 25 chr3 11259155 11259394 -216265184 - MIR SINE MIR -21 241 8 21 57 0 0 chr3 11260986 11261021 -216263557 + AT_rich Low_complexity Low_complexity 1 35 0 445 317 18 115 chr3 11261824 11262125 -216262453 - L2 LINE L2 0 3272 3016 1616 157 57 0 chr3 11262125 11262406 -216262172 + AluJb SINE Alu 2 298 -14 445 317 18 115 chr3 11262406 11262495 -216262083 - L2 LINE L2 -256 3016 2920 180 103 35 0 chr3 11262522 11262551 -216262027 - L2 LINE L2 -52 3220 3191 4334 225 43 9 chr3 11264246 11265300 -216259278 - L1MC4 LINE L1 -151 7891 6803 998 109 48 0 chr3 11265665 11265830 -216258748 - L1MA8 LINE L1 -6 6285 6113 787 241 50 146 chr3 11266227 11266763 -216257815 - MLT1K LTR MaLR -2 586 102 563 301 7 7 chr3 11267862 11268008 -216256570 - L2 LINE L2 0 3313 3168 655 273 121 4 chr3 11268146 11268377 -216256201 + MIR SINE MIR 2 259 -3 234 81 0 0 chr3 11268608 11268645 -216255933 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 327 27 36 chr3 11268976 11269086 -216255492 - MER5A DNA MER1_type -7 182 74 343 338 34 14 chr3 11269093 11269241 -216255337 - MIR3 SINE MIR -24 184 34 1131 208 0 0 chr3 11269456 11269653 -216254925 - MER58A DNA MER1_type 0 224 28 538 125 0 62 chr3 11270022 11270118 -216254460 + FRAM SINE Alu 72 161 -15 1544 186 40 3 chr3 11270124 11270420 -216254158 + AluJb SINE Alu 6 312 0 2225 116 0 0 chr3 11272737 11273048 -216251530 + AluSx SINE Alu 1 311 -1 826 174 8 0 chr3 11273550 11273682 -216250896 + FLAM_A SINE Alu 1 133 0 215 184 214 61 chr3 11273789 11273887 -216250691 - MIR SINE MIR -92 170 58 394 316 30 8 chr3 11273929 11274062 -216250516 - MIR3 SINE MIR -66 142 7 1410 257 78 36 chr3 11274877 11275586 -216248992 + L2 LINE L2 2554 3313 0 2482 177 47 40 chr3 11275734 11276288 -216248290 + MER74A LTR ERVL 1 558 0 473 276 0 0 chr3 11276344 11276449 -216248129 + L2 LINE L2 3168 3272 0 216 250 58 0 chr3 11276452 11276504 -216248074 - L2 LINE L2 -20 3293 3239 467 350 35 15 chr3 11276511 11276708 -216247870 + MIR SINE MIR 34 234 -28 378 242 0 32 chr3 11276770 11276865 -216247713 - MIR SINE MIR -109 153 62 254 269 158 41 chr3 11277181 11277352 -216247226 + Charlie8 DNA MER1_type 67 257 -2160 238 160 40 0 chr3 11277467 11277517 -216247061 + HSMAR1 DNA Mariner 1236 1287 0 592 194 8 0 chr3 11277528 11277654 -216246924 - L1 LINE L1 -1514 4632 4502 334 267 117 39 chr3 11277819 11277999 -216246579 - L2 LINE L2 -112 3201 3008 716 245 32 0 chr3 11278055 11278210 -216246368 + MLT1H LTR MaLR 2 161 -388 2014 201 61 38 chr3 11278211 11278798 -216245780 - L1M4 LINE L1 -1243 4903 4303 963 264 48 29 chr3 11278815 11279194 -216245384 - L1ME LINE L1 -5632 438 53 3174 82 59 0 chr3 11279198 11279622 -216244956 - MLT2A2 LTR ERVL -4 449 1 2049 139 39 22 chr3 11279671 11280031 -216244547 + L1MB4 LINE L1 5475 5840 -340 1608 191 42 35 chr3 11280031 11280408 -216244170 - MLT1B LTR MaLR -7 383 4 1684 176 17 37 chr3 11280408 11280761 -216243817 + L1MB4 LINE L1 5834 6179 -1 264 341 8 56 chr3 11281556 11281682 -216242896 + MIR SINE MIR 53 172 -90 198 214 24 0 chr3 11281660 11281702 -216242876 + L2 LINE L2 3257 3299 -14 * 315 315 46 0 chr3 11281827 11281935 -216242643 - MIR SINE MIR -62 200 88 186 147 0 29 chr3 11282062 11282096 -216242482 + MIR SINE MIR 117 149 -113 319 303 0 10 chr3 11282213 11282312 -216242266 + L2 LINE L2 3171 3268 -4 386 286 71 0 chr3 11283220 11283346 -216241232 + MIR SINE MIR 51 185 -77 267 333 75 25 chr3 11283540 11283699 -216240879 + MIR SINE MIR 45 211 -51 442 220 121 40 chr3 11284066 11284239 -216240339 - MIR SINE MIR -29 233 47 1248 229 111 60 chr3 11284389 11284822 -216239756 - MER77 LTR ERV1 -7 598 144 347 254 109 57 chr3 11284932 11285080 -216239498 + L1ME4a LINE L1 5897 6036 -85 253 0 0 0 chr3 11285080 11285108 -216239470 + (TTTA)n Simple_repeat Simple_repeat 1 176 0 1879 157 4 0 chr3 11285108 11285389 -216239189 - AluJo SINE Alu -31 281 1 347 254 109 57 chr3 11285389 11285431 -216239147 + L1ME4a LINE L1 6035 6099 -22 483 304 83 12 chr3 11286450 11286618 -216237960 - MIR SINE MIR -62 200 21 2361 105 36 28 chr3 11287112 11287473 -216237105 + THE1B LTR MaLR 1 364 0 241 157 39 20 chr3 11287525 11287576 -216237002 + GA-rich Low_complexity Low_complexity 1 52 0 1494 313 148 19 chr3 11287988 11288947 -216235631 + L3 LINE CR1 418 1500 -77 335 224 82 12 chr3 11289752 11289837 -216234741 - MIR SINE MIR -76 132 42 1236 202 0 13 chr3 11290092 11290325 -216234253 + Tigger7 DNA MER2_type 1 230 -2257 2241 124 0 0 chr3 11290349 11290648 -216233930 + AluSx SINE Alu 1 299 -13 623 158 0 0 chr3 11290674 11290769 -216233809 + Tigger7 DNA MER2_type 2393 2487 0 431 217 63 72 chr3 11290969 11291176 -216233402 + L1MC5 LINE L1 7719 7923 -38 731 241 92 57 chr3 11291886 11292034 -216232544 - MER113 DNA MER1_type? -25 496 355 1664 187 42 3 chr3 11292034 11292317 -216232261 + AluJb SINE Alu 1 294 -18 731 241 92 57 chr3 11292317 11292484 -216232094 - MER113 DNA MER1_type? -166 355 170 348 318 30 0 chr3 11292658 11292790 -216231788 - MER69 DNA AcHobo -2297 229 94 780 213 0 3 chr3 11292912 11293257 -216231321 + (CAT)n Simple_repeat Simple_repeat 1 344 0 679 305 64 16 chr3 11293259 11293508 -216231070 - MIR SINE MIR 0 262 2 1853 182 0 3 chr3 11294071 11294368 -216230210 + AluSx SINE Alu 1 296 -16 347 383 0 0 chr3 11294428 11294556 -216230022 + MIR SINE MIR 16 143 -65 192 77 0 0 chr3 11294911 11294937 -216229641 + (TG)n Simple_repeat Simple_repeat 1 26 0 188 143 0 0 chr3 11295009 11295044 -216229534 - MIR SINE MIR -126 136 102 2545 88 11 6 chr3 11295136 11295488 -216229090 + THE1A LTR MaLR 2 355 0 4841 159 37 4 chr3 11296027 11296864 -216227714 - MER6 DNA MER2_type 0 865 1 542 245 155 101 chr3 11296864 11297399 -216227179 + L1ME4a LINE L1 5555 6118 -3 200 260 178 14 chr3 11297527 11297600 -216226978 + MIR SINE MIR 59 143 -119 1032 88 7 0 chr3 11297771 11297919 -216226659 - L1PA6 LINE L1 -1 6153 6005 522 303 131 17 chr3 11298128 11298488 -216226090 - LTR33 LTR ERVL -4 517 117 1435 196 55 35 chr3 11298493 11298839 -216225739 - MLT1A1 LTR MaLR -3 362 10 409 176 130 30 chr3 11298845 11298976 -216225602 - LTR33 LTR ERVL -372 149 6 357 298 76 41 chr3 11300289 11300671 -216223907 + MLT1K LTR MaLR 156 580 -8 353 299 60 9 chr3 11301198 11301377 -216223201 + MIR SINE MIR 32 221 -41 1516 188 78 20 chr3 11301388 11301733 -216222845 - MLT1A1 LTR MaLR 0 365 1 183 411 6 24 chr3 11301855 11302023 -216222555 + MIR SINE MIR 28 192 -70 1025 150 20 0 chr3 11302176 11302329 -216222249 + FRAM SINE Alu 1 153 -23 467 229 9 67 chr3 11302335 11302368 -216222210 - MIR SINE MIR 0 262 229 2321 120 28 11 chr3 11302368 11302726 -216221852 + THE1B LTR MaLR 1 364 0 467 229 9 67 chr3 11302726 11302865 -216221713 - MIR SINE MIR -33 229 102 610 164 66 0 chr3 11303158 11303280 -216221298 - THE1C LTR MaLR -245 130 1 406 197 0 0 chr3 11303315 11303381 -216221197 - AluJ/FRAM SINE Alu -15 297 232 824 264 15 5 chr3 11303697 11303898 -216220680 + MIR SINE MIR 60 262 0 41090 33 25 2 chr3 11303934 11309944 -216214634 + L1PA3 LINE L1 1 6154 -1 309 250 30 20 chr3 11310207 11310307 -216214271 - MER20B DNA MER1_type -639 144 44 1016 216 116 9 chr3 11311528 11311844 -216212734 + MLT1G3 LTR MaLR 182 571 -19 243 325 35 98 chr3 11312445 11312546 -216212032 + L2 LINE L2 2702 2785 -529 2380 124 22 28 chr3 11312546 11312910 -216211668 + THE1B LTR MaLR 3 364 0 243 325 35 98 chr3 11312910 11313011 -216211567 + L2 LINE L2 2785 2891 -423 394 266 127 3 chr3 11313924 11314092 -216210486 + MIR SINE MIR 3 192 -63 575 194 67 37 chr3 11314733 11314867 -216209711 + MIR3 SINE MIR 5 142 -66 180 250 0 0 chr3 11315030 11315070 -216209508 + MIR3 SINE MIR 151 190 -18 205 345 24 0 chr3 11316279 11316363 -216208215 - L2 LINE L2 -24 3248 3163 232 286 19 48 chr3 11316403 11316508 -216208070 - L2 LINE L2 -4 3309 3208 681 270 34 0 chr3 11317013 11317191 -216207387 - MER58A DNA MER1_type -11 213 30 681 240 191 34 chr3 11317236 11317624 -216206954 + L2 LINE L2 2863 3311 -2 218 256 13 0 chr3 11317630 11317708 -216206870 + GA-rich Low_complexity Low_complexity 3 81 0 508 246 78 7 chr3 11318088 11318230 -216206348 + MIR SINE MIR 1 152 -110 1777 230 62 45 chr3 11318841 11319393 -216205185 + MLT1K LTR MaLR 13 573 -15 241 286 223 0 chr3 11319944 11320056 -216204522 - L2 LINE L2 -2 3311 3175 269 225 56 56 chr3 11320285 11320374 -216204204 + MIR3 SINE MIR 104 192 -16 1219 242 62 47 chr3 11320872 11321261 -216203317 + MLT1C LTR MaLR 6 404 -63 2412 75 0 13 chr3 11321261 11321567 -216203011 - AluY SINE Alu -9 302 1 1219 242 62 47 chr3 11321567 11321628 -216202950 + MLT1C LTR MaLR 404 463 -4 435 298 33 8 chr3 11321853 11321974 -216202604 - MIR3 SINE MIR -6 202 79 230 213 62 50 chr3 11323391 11323471 -216201107 - L2 LINE L2 -1 3271 3191 804 301 4 9 chr3 11323492 11323718 -216200860 + MIR SINE MIR 13 237 -25 185 108 27 0 chr3 11323738 11323775 -216200803 + (CACCAT)n Simple_repeat Simple_repeat 6 43 0 247 322 26 52 chr3 11323925 11324040 -216200538 - L2 LINE L2 -213 3059 2948 203 264 69 42 chr3 11324276 11324348 -216200230 - MIR3 SINE MIR -23 185 112 564 231 50 0 chr3 11324916 11325037 -216199541 - MIR3 SINE MIR -12 196 70 508 391 29 0 chr3 11325314 11325521 -216199057 + MIR SINE MIR 19 231 -31 2263 82 6 57 chr3 11325551 11325868 -216198710 - AluSq SINE Alu -12 301 1 241 264 191 18 chr3 11326505 11326615 -216197963 - MIR SINE MIR -119 143 15 920 228 73 0 chr3 11327280 11327486 -216197092 - MER58A DNA MER1_type -3 221 1 412 296 138 13 chr3 11327496 11327648 -216196930 - MER5A DNA MER1_type -3 186 5 1266 214 177 21 chr3 11328605 11328989 -216195589 + MLT1H1 LTR MaLR 95 538 -17 832 253 92 4 chr3 11328990 11329239 -216195339 + LTR16B LTR ERVL 194 464 0 648 203 16 31 chr3 11329250 11329378 -216195200 - MIR SINE MIR -117 145 20 303 143 0 18 chr3 11329386 11329442 -216195136 + Tigger5 DNA MER2_type 1 55 -2268 687 299 79 0 chr3 11329808 11329985 -216194593 - MIR3 SINE MIR -10 198 8 198 288 86 61 chr3 11330118 11330281 -216194297 + L2 LINE L2 2872 3038 -234 * 232 340 108 44 chr3 11330273 11330523 -216194055 + L2 LINE L2 2624 2889 -425 306 250 12 12 chr3 11330783 11330863 -216193715 + L2 LINE L2 3193 3272 0 189 195 0 0 chr3 11330921 11330962 -216193616 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 181 241 56 19 chr3 11331065 11331119 -216193459 + L2 LINE L2 3197 3252 -20 240 268 56 14 chr3 11331625 11331696 -216192882 - L2 LINE L2 -8 3264 3191 1747 284 99 33 chr3 11331838 11332805 -216191773 + L1M4 LINE L1 3879 4952 -1194 955 233 78 91 chr3 11332805 11333333 -216191245 + LTR33 LTR ERVL 1 521 0 1747 284 99 33 chr3 11333333 11333653 -216190925 + L1M4 LINE L1 4952 5250 -896 1765 158 0 46 chr3 11333723 11334046 -216190532 + AluSx SINE Alu 1 308 -4 227 111 0 22 chr3 11334215 11334260 -216190318 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 230 271 73 42 chr3 11334427 11334523 -216190055 + MIR SINE MIR 56 154 -108 221 248 50 99 chr3 11335209 11335330 -216189248 + MIR SINE MIR 16 130 -78 2349 89 16 0 chr3 11336077 11336381 -216188197 + AluY SINE Alu 1 309 -2 471 221 131 8 chr3 11336577 11336699 -216187879 + MER5A DNA MER1_type 9 145 -44 397 250 12 0 chr3 11337108 11337192 -216187386 + L2 LINE L2 3186 3270 -2 689 235 0 15 chr3 11337266 11337402 -216187176 - MLT1A1 LTR MaLR 0 365 232 2035 130 2 60 chr3 11337404 11337804 -216186774 - MER4B LTR ERV1 0 610 234 1595 256 156 29 chr3 11339111 11339972 -216184606 - L1M4 LINE L1 -880 5266 4297 1302 234 11 34 chr3 11340000 11340354 -216184224 - L1ME1 LINE L1 -3 6163 5818 2071 109 0 3 chr3 11340358 11340675 -216183903 - AluSc SINE Alu 0 316 1 12682 199 37 38 chr3 11340828 11343282 -216181296 - L1MB7 LINE L1 0 6995 4540 1850 135 7 3 chr3 11343282 11343603 -216180975 - AluSx SINE Alu 0 322 1 12682 199 37 38 chr3 11343603 11345413 -216179165 - L1MB7 LINE L1 -2455 4540 2761 1733 172 28 8 chr3 11345413 11345773 -216178805 - L1MA6 LINE L1 0 6300 5934 12682 199 37 38 chr3 11345773 11345863 -216178715 - L1MB7 LINE L1 -4234 2761 2672 3692 262 61 18 chr3 11345865 11346979 -216177599 - L1MB7 LINE L1 -5687 1172 11 438 234 177 40 chr3 11347859 11348034 -216176544 + MIR SINE MIR 47 245 -17 426 296 48 0 chr3 11348037 11348162 -216176416 - L2 LINE L2 -1 3312 3182 378 171 0 0 chr3 11348185 11348255 -216176323 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 557 267 18 120 chr3 11348273 11348606 -216175972 - L2 LINE L2 -129 3184 2886 1816 145 0 26 chr3 11348611 11348922 -216175656 + AluJo SINE Alu 1 303 -9 340 343 39 34 chr3 11348924 11349128 -216175450 + L1MC4 LINE L1 7821 8025 -17 522 275 225 39 chr3 11349137 11349595 -216174983 - L2 LINE L2 -399 2915 2373 902 198 0 23 chr3 11350582 11350759 -216173819 - MIR SINE MIR -27 235 63 1759 148 16 30 chr3 11351307 11351610 -216172968 - AluJb SINE Alu -13 299 1 596 172 101 65 chr3 11351610 11351779 -216172799 - MLT1B LTR MaLR -215 175 1 300 262 24 0 chr3 11352481 11352565 -216172013 + MER117 DNA MER1_type 112 197 0 24 0 0 0 chr3 11354133 11354157 -216170421 + AT_rich Low_complexity Low_complexity 1 24 0 210 150 0 0 chr3 11356601 11356641 -216167937 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 600 293 105 39 chr3 11356643 11356977 -216167601 - L2 LINE L2 0 3313 2958 444 256 39 32 chr3 11357719 11357801 -216166777 + MER103 DNA DNA 2 87 -79 1970 135 40 6 chr3 11357801 11358127 -216166451 + MER1B DNA MER1_type 1 337 0 444 256 39 32 chr3 11358127 11358200 -216166378 + MER103 DNA DNA 87 158 -8 268 273 30 0 chr3 11359694 11359760 -216164818 - MIR SINE MIR -126 136 69 727 226 34 34 chr3 11360165 11360342 -216164236 + MIR SINE MIR 22 198 -64 224 313 12 0 chr3 11360344 11360424 -216164154 + MIR SINE MIR 169 249 -13 748 241 29 0 chr3 11360606 11360780 -216163798 - MSTD LTR MaLR -212 184 6 264 280 64 88 chr3 11360877 11361002 -216163576 - L2 LINE L2 -2 3270 3149 431 291 81 63 chr3 11361165 11361517 -216163061 - MLT1K LTR MaLR -8 580 180 400 210 0 0 chr3 11361624 11361705 -216162873 + MLT1H LTR MaLR 469 549 0 271 262 0 0 chr3 11362739 11362800 -216161778 - MER20 DNA MER1_type -5 214 154 1471 169 75 52 chr3 11362834 11363183 -216161395 + MLT1B LTR MaLR 34 390 0 548 171 55 75 chr3 11363188 11363334 -216161244 - MER20 DNA MER1_type -76 143 1 255 200 143 14 chr3 11363346 11363416 -216161162 + L2 LINE L2 3230 3308 -5 204 40 0 0 chr3 11364657 11364682 -216159896 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 339 138 0 35 chr3 11365317 11365375 -216159203 + Alu SINE Alu 1 56 -246 212 349 23 23 chr3 11365380 11365466 -216159112 + L2 LINE L2 3186 3271 -1 430 320 110 29 chr3 11365534 11365815 -216158763 - MER102b DNA MER1_type -4 337 34 756 125 35 49 chr3 11365871 11366015 -216158563 + MER20 DNA MER1_type 16 157 -62 219 302 60 17 chr3 11366534 11366650 -216157928 - L2 LINE L2 -16 3256 3136 332 315 54 23 chr3 11367212 11367342 -216157236 - MIR SINE MIR -32 230 97 354 214 67 34 chr3 11367388 11367477 -216157101 - L1MC4 LINE L1 -1339 6703 6612 303 286 22 22 chr3 11367637 11367728 -216156850 + L1MC4 LINE L1 6612 6702 -1340 231 185 111 0 chr3 11367741 11367822 -216156756 + L1MC4 LINE L1 6614 6703 -1339 310 264 7 7 chr3 11367825 11367965 -216156613 + (TA)n Simple_repeat Simple_repeat 2 141 0 1718 156 30 3 chr3 11367967 11368262 -216156316 - AluJb SINE Alu -9 303 1 185 259 69 35 chr3 11368270 11368328 -216156250 - L2 LINE L2 -17 3296 3237 851 282 58 47 chr3 11368340 11368519 -216156059 - LTR16A LTR ERVL 0 450 274 4636 92 5 3 chr3 11368519 11369161 -216155417 - L1PA12 LINE L1 -1 6167 5525 851 282 58 47 chr3 11369161 11369346 -216155232 - LTR16A LTR ERVL -176 274 82 273 200 0 80 chr3 11369363 11369438 -216155140 - L2 LINE L2 -86 3227 3159 414 113 0 16 chr3 11369863 11369925 -216154653 - MLT1L LTR MaLR -8 607 547 680 291 66 21 chr3 11370793 11371082 -216153496 + L1MC4a LINE L1 5666 5967 -1841 2378 138 8 22 chr3 11371923 11372152 -216152426 - MLT1A1 LTR MaLR 0 365 141 2022 146 152 19 chr3 11372152 11372528 -216152050 - MSTB LTR MaLR 0 426 1 2378 138 8 22 chr3 11372528 11372668 -216151910 - MLT1A1 LTR MaLR -224 141 1 422 248 17 8 chr3 11372833 11372950 -216151628 - MER103 DNA DNA -29 137 20 399 261 116 36 chr3 11373035 11373173 -216151405 - MIR3 SINE MIR -49 159 11 2968 119 111 15 chr3 11373435 11373913 -216150665 - MER1A DNA MER1_type 0 527 4 245 323 30 0 chr3 11374109 11374208 -216150370 + MER103 DNA DNA 63 164 -2 199 296 43 24 chr3 11374634 11374738 -216149840 - MER5B DNA MER1_type -64 118 22 237 369 27 0 chr3 11374821 11374932 -216149646 + MIR SINE MIR 32 145 -117 325 300 169 25 chr3 11375506 11375666 -216148912 + MIR3 SINE MIR 20 202 -6 244 279 34 32 chr3 11375781 11375928 -216148650 + MIR SINE MIR 2 218 -44 220 177 177 32 chr3 11376591 11376653 -216147925 + MIR SINE MIR 77 147 -115 204 232 98 24 chr3 11376701 11376783 -216147795 + L2 LINE L2 3159 3246 -26 1281 63 0 46 chr3 11377356 11377531 -216147047 + L1PA6 LINE L1 5977 6143 -11 200 245 113 38 chr3 11377645 11377751 -216146827 + L2 LINE L2 3149 3262 -10 180 0 0 0 chr3 11377787 11377807 -216146771 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 304 269 104 52 chr3 11377976 11378110 -216146468 + MIR SINE MIR 40 180 -82 237 256 77 39 chr3 11378138 11378216 -216146362 - MIR3 SINE MIR -40 168 88 628 203 17 0 chr3 11378218 11378336 -216146242 - MLT1K LTR MaLR 0 555 436 333 253 158 51 chr3 11378388 11378546 -216146032 - MLT1H LTR MaLR -319 230 56 189 107 0 0 chr3 11378974 11379002 -216145576 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 239 403 8 0 chr3 11379107 11379236 -216145342 + (CA)n Simple_repeat Simple_repeat 1 130 0 284 260 13 13 chr3 11379823 11379900 -216144678 + MIR SINE MIR 17 93 -115 23 33 0 0 chr3 11380433 11380463 -216144115 + AT_rich Low_complexity Low_complexity 1 30 0 321 307 69 55 chr3 11380543 11380761 -216143817 - L1MC4a LINE L1 -1747 6061 5841 667 301 9 19 chr3 11380777 11380988 -216143590 - MIR SINE MIR -8 254 47 1708 161 0 4 chr3 11381072 11381351 -216143227 + AluJb SINE Alu 13 290 -22 316 276 197 0 chr3 11382447 11382574 -216142004 - MLT1K LTR MaLR -18 570 419 245 289 115 39 chr3 11382586 11382690 -216141888 + L2 LINE L2 3197 3308 -5 194 61 0 30 chr3 11382765 11382798 -216141780 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 441 0 0 0 chr3 11382810 11382859 -216141719 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1197 245 78 59 chr3 11382866 11383290 -216141288 - MLT1K LTR MaLR -155 433 2 678 320 92 31 chr3 11383379 11383738 -216140840 + L2 LINE L2 2886 3266 -6 357 216 0 0 chr3 11383845 11383933 -216140645 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 293 274 132 9 chr3 11383984 11384090 -216140488 - L2 LINE L2 -2 3311 3193 295 292 57 94 chr3 11384418 11384528 -216140050 + MIR3 SINE MIR 3 106 -102 2175 85 0 0 chr3 11384528 11384833 -216139745 - AluSg SINE Alu 0 305 1 295 292 57 94 chr3 11384833 11384913 -216139665 + MIR3 SINE MIR 106 187 -21 1014 258 21 0 chr3 11385388 11385621 -216138957 + MIR SINE MIR 24 261 -1 1307 112 21 0 chr3 11386682 11386870 -216137708 - L1PA10 LINE L1 -1 6167 5976 189 107 0 0 chr3 11387338 11387366 -216137212 + (TGG)n Simple_repeat Simple_repeat 1 28 0 942 232 77 0 chr3 11387389 11387609 -216136969 - MIR SINE MIR -22 240 4 2278 112 3 0 chr3 11387703 11387999 -216136579 + AluSq SINE Alu 3 299 -14 904 122 0 38 chr3 11388401 11388532 -216136046 + AluJb SINE Alu 1 126 -186 1862 232 35 14 chr3 11388593 11389085 -216135493 + L1ME1 LINE L1 5584 6085 -81 366 283 0 33 chr3 11389108 11389200 -216135378 + MIR3 SINE MIR 103 191 -17 261 0 0 0 chr3 11389609 11389638 -216134940 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 217 231 0 0 chr3 11389691 11389743 -216134835 + (ATG)n Simple_repeat Simple_repeat 2 53 0 300 287 120 0 chr3 11390751 11390859 -216133719 + MER117 DNA MER1_type 2 122 -75 877 142 0 22 chr3 11390861 11390995 -216133583 + FLAM_C SINE Alu 1 131 -2 3755 187 30 21 chr3 11390995 11391071 -216133507 + L1MB7 LINE L1 5325 5399 -785 2152 141 13 0 chr3 11391071 11391375 -216133203 + AluJb SINE Alu 1 308 -4 3755 187 30 21 chr3 11391375 11392074 -216132504 + L1MB7 LINE L1 5399 6107 -77 23 0 0 0 chr3 11392074 11392097 -216132481 + AT_rich Low_complexity Low_complexity 1 23 0 557 298 26 37 chr3 11392142 11392333 -216132245 + MIR3 SINE MIR 17 205 -3 509 269 248 38 chr3 11392803 11393248 -216131330 - L2 LINE L2 -38 3275 2727 1894 143 21 4 chr3 11393265 11393544 -216131034 - AluSx SINE Alu -28 284 1 1998 131 6 44 chr3 11393761 11394082 -216130496 + AluJo SINE Alu 1 309 -3 241 350 41 0 chr3 11394544 11394641 -216129937 - L2 LINE L2 -31 3241 3141 448 237 148 106 chr3 11395177 11395460 -216129118 - L2 LINE L2 0 3272 2978 256 260 39 52 chr3 11395621 11395698 -216128880 - MIR SINE MIR -182 80 5 292 298 0 12 chr3 11396066 11396150 -216128428 + MLT1K LTR MaLR 182 264 -324 233 219 12 49 chr3 11396266 11396348 -216128230 + MLT1K LTR MaLR 454 532 -56 2297 122 0 0 chr3 11396900 11397204 -216127374 - AluSx SINE Alu -8 304 1 219 69 0 0 chr3 11397346 11397375 -216127203 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr3 11397645 11397669 -216126909 + (CAA)n Simple_repeat Simple_repeat 1 24 0 627 311 0 5 chr3 11398662 11398855 -216125723 - MIR SINE MIR 0 262 71 189 0 0 0 chr3 11399229 11399250 -216125328 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 324 0 0 chr3 11399600 11399671 -216124907 + (CCCA)n Simple_repeat Simple_repeat 2 72 0 801 194 0 0 chr3 11399671 11399851 -216124727 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1027 278 64 82 chr3 11400461 11401024 -216123554 - L1ME3A LINE L1 -214 5956 5384 1863 151 0 20 chr3 11401024 11401316 -216123262 - AluJo SINE Alu -13 299 14 1027 278 64 82 chr3 11401316 11402030 -216122548 - L1ME3A LINE L1 -786 5384 4708 1989 134 6 26 chr3 11402058 11402371 -216122207 + AluJo SINE Alu 6 312 0 345 241 50 60 chr3 11402397 11402596 -216121982 + L1M4 LINE L1 2788 2984 -3162 251 267 79 0 chr3 11402743 11402844 -216121734 - L1M4 LINE L1 -2097 4049 3941 * 262 310 172 0 chr3 11402840 11402985 -216121593 + L1M4 LINE L1 4039 4208 -1938 36 0 0 0 chr3 11403140 11403176 -216121402 + AT_rich Low_complexity Low_complexity 1 36 0 1731 185 0 17 chr3 11403188 11403205 -216121373 - AluJo SINE Alu -15 297 281 426 85 0 0 chr3 11403205 11403264 -216121314 + (TA)n Simple_repeat Simple_repeat 1 59 0 1731 185 0 17 chr3 11403264 11403548 -216121030 - AluJo SINE Alu -31 281 1 624 264 165 0 chr3 11403564 11403776 -216120802 - MIR SINE MIR -13 249 3 1113 289 74 5 chr3 11403891 11404285 -216120293 + LTR16A LTR ERVL 19 439 -11 1683 153 51 0 chr3 11404547 11404822 -216119756 - AluJo SINE Alu -23 289 1 516 257 90 0 chr3 11404895 11405039 -216119539 + MIR SINE MIR 102 258 -4 353 68 0 0 chr3 11405866 11405910 -216118668 + MIR3 SINE MIR 115 158 -50 1130 178 5 0 chr3 11405911 11406096 -216118482 + MER5A DNA MER1_type 2 187 -2 503 295 52 52 chr3 11406127 11406456 -216118122 - MER102b DNA MER1_type -12 329 1 906 355 115 15 chr3 11406833 11407484 -216117094 + L3 LINE CR1 786 1501 -76 924 269 97 71 chr3 11407521 11408057 -216116521 + MLT1K LTR MaLR 37 586 -2 395 333 92 19 chr3 11408434 11408641 -216115937 - MIR SINE MIR -6 256 35 621 269 26 52 chr3 11409606 11409874 -216114704 - MIR SINE MIR 0 262 2 206 283 0 0 chr3 11409978 11410024 -216114554 - MIR SINE MIR -57 151 106 310 219 0 0 chr3 11410030 11410094 -216114484 - L2 LINE L2 -9 3263 3200 901 246 79 61 chr3 11410108 11410680 -216113898 + L1ME4a LINE L1 5522 6103 -18 284 263 124 25 chr3 11411174 11411337 -216113241 - MIR3 SINE MIR -37 171 21 1074 158 16 0 chr3 11411763 11411947 -216112631 + MER5A DNA MER1_type 1 187 -2 2128 160 11 3 chr3 11412019 11412382 -216112196 - MER47A DNA MER2_type 0 366 1 2420 90 63 0 chr3 11412757 11413091 -216111487 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 11413164 11413202 -216111376 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 261 307 33 65 chr3 11413683 11413836 -216110742 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 11413845 11414026 -216110552 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 11414047 11414146 -216110432 + L2 LINE L2 3141 3245 -27 219 255 10 71 chr3 11414175 11414273 -216110305 - L2 LINE L2 -246 3026 2935 747 219 43 12 chr3 11414419 11414583 -216109995 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 11414594 11414889 -216109689 + AluJo SINE Alu 1 297 -15 225 296 0 0 chr3 11414975 11415029 -216109549 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 224 294 123 70 chr3 11415801 11416199 -216108379 - L2 LINE L2 -38 3234 2816 311 335 50 29 chr3 11416426 11416668 -216107910 - L2 LINE L2 -810 2504 2258 185 167 148 102 chr3 11417138 11417246 -216107332 + MIR SINE MIR 8 120 -142 587 280 50 121 chr3 11417316 11417795 -216106783 - L2 LINE L2 -1 3271 2827 416 251 140 39 chr3 11418661 11418840 -216105738 - L2 LINE L2 -2 3311 3115 276 258 67 34 chr3 11419089 11419178 -216105400 + L2 LINE L2 3180 3271 -1 2409 151 38 16 chr3 11419407 11419857 -216104721 - MLT1C LTR MaLR -1 466 7 1938 87 68 13 chr3 11419857 11420167 -216104411 + THE1C LTR MaLR 1 327 -48 389 335 82 26 chr3 11420370 11420564 -216104014 + MIR SINE MIR 31 235 -27 416 352 28 56 chr3 11421128 11421341 -216103237 - MIR SINE MIR -26 236 30 488 208 129 16 chr3 11421977 11422301 -216102277 + MER113 DNA MER1_type? 19 413 -108 637 280 28 11 chr3 11422381 11422563 -216102015 - L3 LINE CR1 -105 1472 1288 492 341 23 56 chr3 11423012 11423226 -216101352 + MIR SINE MIR 30 236 -26 1672 166 14 54 chr3 11424095 11424420 -216100158 + AluJo SINE Alu 1 313 0 192 77 0 0 chr3 11424499 11424525 -216100053 + (TCC)n Simple_repeat Simple_repeat 2 27 0 620 275 12 6 chr3 11424885 11425045 -216099533 - MER5A DNA MER1_type -3 186 26 413 276 40 63 chr3 11425231 11425405 -216099173 - L2 LINE L2 0 3272 3103 197 314 88 0 chr3 11425707 11425809 -216098769 + L2 LINE L2 2964 3074 -198 1179 248 93 20 chr3 11425811 11426250 -216098328 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 11426380 11426484 -216098094 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 11426492 11426567 -216098011 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 11426703 11426785 -216097793 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 11426804 11426921 -216097657 + MIR SINE MIR 19 141 -67 398 344 52 7 chr3 11427255 11427409 -216097169 + MIR3 SINE MIR 19 179 -29 243 266 83 37 chr3 11428271 11428380 -216096198 + MIR SINE MIR 51 164 -98 368 226 150 8 chr3 11428430 11428563 -216096015 + L1ME4a LINE L1 5968 6119 -2 2501 70 0 0 chr3 11428684 11428983 -216095595 + AluY SINE Alu 1 299 -12 2580 156 16 9 chr3 11429176 11429626 -216094952 + L1MB3 LINE L1 5727 6179 -4 192 77 0 0 chr3 11429626 11429652 -216094926 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2210 113 7 0 chr3 11429657 11429941 -216094637 + AluSx SINE Alu 1 286 -26 330 222 0 0 chr3 11429941 11430004 -216094574 + L1MC4 LINE L1 6641 6703 -1339 207 0 0 0 chr3 11430020 11430043 -216094535 + (GA)n Simple_repeat Simple_repeat 2 24 0 403 252 94 38 chr3 11430667 11430826 -216093752 - MIR SINE MIR 0 262 95 890 277 126 25 chr3 11431364 11431834 -216092744 + MER113 DNA MER1_type? 5 521 0 674 255 101 49 chr3 11432276 11432582 -216091996 + Charlie2 DNA MER1_type 2 323 -2539 1942 112 52 0 chr3 11432582 11432851 -216091727 + AluSg SINE Alu 1 283 -27 318 80 0 0 chr3 11432851 11432901 -216091677 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 1325 198 0 8 chr3 11432919 11433166 -216091412 + L1PB4 LINE L1 5908 6152 -4 206 0 0 0 chr3 11433262 11433285 -216091293 + MER5C DNA MER1_type 4 26 -298 1628 151 0 53 chr3 11433289 11433574 -216091004 + AluJo SINE Alu 18 287 -25 385 97 32 32 chr3 11433576 11433638 -216090940 + MER5A DNA MER1_type 10 71 -118 828 182 0 82 chr3 11433639 11433676 -216090902 + AluJo SINE Alu 88 126 -186 2313 99 0 3 chr3 11433676 11433979 -216090599 - AluSc SINE Alu -7 302 1 828 182 0 82 chr3 11433979 11434111 -216090467 + AluJo SINE Alu 126 243 -69 207 0 0 0 chr3 11434137 11434160 -216090418 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr3 11434161 11434200 -216090378 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 268 150 62 38 chr3 11434218 11434298 -216090280 + L1MA10 LINE L1 6253 6334 0 276 250 230 20 chr3 11434310 11434410 -216090168 + MER5A DNA MER1_type 69 189 0 731 208 156 34 chr3 11434421 11434800 -216089778 + Charlie2 DNA MER1_type 2231 2655 -207 800 271 34 7 chr3 11434801 11435070 -216089508 + L1ME3 LINE L1 5615 5890 -272 591 273 78 0 chr3 11435084 11435289 -216089289 + L1ME3 LINE L1 5942 6162 0 705 165 16 8 chr3 11435337 11435458 -216089120 - FLAM_C SINE Alu -17 126 5 397 160 4 208 chr3 11435475 11435706 -216088872 + Charlie2 DNA MER1_type 2663 2846 -16 2320 105 0 0 chr3 11436000 11436294 -216088284 - AluSx SINE Alu -18 294 1 339 167 65 9 chr3 11436362 11436470 -216088108 + (CA)n Simple_repeat Simple_repeat 1 114 0 271 282 46 81 chr3 11436680 11436854 -216087724 - MIR SINE MIR -93 169 2 183 80 0 0 chr3 11437399 11437424 -216087154 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 193 295 64 13 chr3 11437579 11437657 -216086921 - MIR3 SINE MIR -23 185 104 2428 99 0 10 chr3 11437663 11437975 -216086603 - AluSx SINE Alu -3 309 1 210 350 58 0 chr3 11438001 11438104 -216086474 + L2 LINE L2 2697 2805 -509 3554 150 60 19 chr3 11438328 11438996 -216085582 - L1MC2 LINE L1 -9 6335 5641 260 94 57 0 chr3 11438997 11439050 -216085528 - L1MC2 LINE L1 0 6344 6289 299 128 73 18 chr3 11439227 11439336 -216085242 + (TA)n Simple_repeat Simple_repeat 2 116 0 752 219 56 85 chr3 11439350 11439436 -216085142 - L1MC2 LINE L1 -1865 5943 5856 2097 131 0 7 chr3 11439436 11439727 -216084851 + AluSx SINE Alu 1 289 -23 752 219 56 85 chr3 11439727 11439959 -216084619 - L1MC2 LINE L1 -1952 5856 5634 479 203 23 73 chr3 11440073 11440250 -216084328 + L1MC5 LINE L1 7758 7925 -36 504 297 36 0 chr3 11440709 11440847 -216083731 - MIR SINE MIR -72 190 48 593 223 192 16 chr3 11441081 11441274 -216083304 + MIR SINE MIR 6 232 -30 648 133 285 0 chr3 11441286 11441444 -216083134 - MER3 DNA MER1_type -6 203 1 426 298 48 37 chr3 11441760 11441948 -216082630 + MIR SINE MIR 21 210 -52 353 267 134 31 chr3 11441991 11442216 -216082362 + MIR SINE MIR 2 250 -12 204 79 0 53 chr3 11442631 11442669 -216081909 + (CCCCG)n Simple_repeat Simple_repeat 1 36 0 273 227 96 18 chr3 11442903 11443002 -216081576 - MIR SINE MIR -60 148 28 568 270 15 7 chr3 11443102 11443239 -216081339 + MIR SINE MIR 20 157 -105 490 274 8 0 chr3 11443267 11443391 -216081187 - MIR SINE MIR -65 197 73 1115 214 114 80 chr3 11444388 11444845 -216079733 + MER113 DNA MER1_type? 6 483 -38 2012 118 74 6 chr3 11444845 11445183 -216079395 + MER46B DNA MER2_type 1 236 0 1115 214 114 80 chr3 11445183 11445224 -216079354 + MER113 DNA MER1_type? 483 521 0 199 254 48 16 chr3 11445390 11445453 -216079125 + L2 LINE L2 3249 3313 0 2089 209 47 10 chr3 11445464 11445951 -216078627 + MLT1D LTR MaLR 1 505 0 206 278 102 46 chr3 11446176 11446284 -216078294 - L2 LINE L2 -11 3261 3148 333 68 0 0 chr3 11446359 11446403 -216078175 + (CA)n Simple_repeat Simple_repeat 1 44 0 715 303 84 9 chr3 11446404 11446737 -216077841 + L1ME4a LINE L1 5681 6038 -83 949 239 41 18 chr3 11446779 11446997 -216077581 - MER58A DNA MER1_type 0 224 2 450 0 0 0 chr3 11447796 11447846 -216076732 + (TG)n Simple_repeat Simple_repeat 2 51 0 244 191 138 64 chr3 11448349 11448443 -216076135 + MIR SINE MIR 104 204 -58 287 229 29 0 chr3 11448862 11448932 -216075646 + MIR SINE MIR 54 125 -83 1998 152 0 16 chr3 11449067 11449382 -216075196 - AluJb SINE Alu -2 310 1 645 277 36 111 chr3 11450007 11450691 -216073887 + L2 LINE L2 2367 2984 -288 2747 82 6 3 chr3 11450691 11451045 -216073533 + THE1A LTR MaLR 1 355 0 645 277 36 111 chr3 11451045 11451066 -216073512 + L2 LINE L2 2984 3005 -267 375 200 120 0 chr3 11451088 11451188 -216073390 + MIR SINE MIR 141 252 -10 2135 130 0 10 chr3 11451314 11451638 -216072940 - AluSx SINE Alu 0 312 1 265 332 58 63 chr3 11451781 11452281 -216072297 - L2 LINE L2 0 3272 2772 255 200 20 0 chr3 11452784 11452834 -216071744 + L2 LINE L2 2978 3028 -244 377 275 87 29 chr3 11453270 11453408 -216071170 - MIR SINE MIR -34 228 83 216 67 0 0 chr3 11454396 11454426 -216070152 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2345 97 3 3 chr3 11455176 11455486 -216069092 + AluSg SINE Alu 1 310 0 908 278 50 42 chr3 11455622 11456022 -216068556 + MLT1H LTR MaLR 1 403 -146 489 260 84 101 chr3 11456161 11456615 -216067963 - L2 LINE L2 0 3272 2827 228 67 0 0 chr3 11457036 11457066 -216067512 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 646 179 32 8 chr3 11458300 11458423 -216066155 + L2 LINE L2 3181 3306 -7 234 81 0 0 chr3 11458630 11458667 -216065911 + (TC)n Simple_repeat Simple_repeat 2 38 0 988 248 48 22 chr3 11458965 11459341 -216065237 + LTR16A LTR ERVL 26 450 0 604 187 134 53 chr3 11459518 11459689 -216064889 - MIR SINE MIR 0 262 78 435 267 93 0 chr3 11460952 11461113 -216063465 + Charlie8 DNA MER1_type 64 239 -2178 863 266 67 57 chr3 11461244 11462056 -216062522 - L1MEd LINE L1 -856 1634 845 2546 51 0 0 chr3 11462073 11462366 -216062212 - AluY SINE Alu -18 293 1 1992 120 157 19 chr3 11463321 11463697 -216060881 - MSTA LTR MaLR 0 428 1 622 254 225 0 chr3 11463725 11463934 -216060644 - MIR SINE MIR 0 262 7 292 229 156 21 chr3 11464786 11464882 -216059696 - MIR SINE MIR -103 159 51 435 101 14 0 chr3 11465852 11465921 -216058657 + L1PA15 LINE L1 6087 6156 -9 608 201 255 0 chr3 11466274 11466423 -216058155 + MIR SINE MIR 12 198 -64 2423 183 82 19 chr3 11466438 11466963 -216057615 + MLT1F1 LTR MaLR 1 558 -9 195 209 0 149 chr3 11466976 11467043 -216057535 + MIR SINE MIR 190 246 -16 1574 161 92 69 chr3 11467116 11467563 -216057015 + L1MC4 LINE L1 6985 7441 -601 284 258 27 30 chr3 11467644 11467799 -216056779 - MIR SINE MIR -27 235 34 2487 147 70 2 chr3 11468128 11468571 -216056007 + L1MB3 LINE L1 5704 6176 -7 510 179 51 26 chr3 11468987 11469104 -216055474 + MIR SINE MIR 87 206 -56 821 290 67 0 chr3 11469149 11469373 -216055205 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 11470151 11470235 -216054343 - MIR SINE MIR -12 250 166 1853 71 5 0 chr3 11470237 11470461 -216054117 - AluSp SINE Alu -2 311 87 206 295 16 0 chr3 11470461 11470522 -216054056 - MIR SINE MIR -114 94 33 1981 145 3 0 chr3 11470527 11470856 -216053722 - AluSx SINE Alu 0 330 1 189 224 259 35 chr3 11471121 11471237 -216053341 - MIR3 SINE MIR -62 146 5 476 308 162 32 chr3 11471817 11472328 -216052250 + L2 LINE L2 2712 3272 0 465 257 142 0 chr3 11472477 11472590 -216051988 + L2 LINE L2 3142 3270 -2 484 232 92 30 chr3 11472619 11472783 -216051795 + MLT1J LTR MaLR 11 184 -327 306 252 148 26 chr3 11472798 11472953 -216051625 + MLT1J LTR MaLR 303 476 -35 313 385 65 6 chr3 11472972 11473323 -216051255 + L2 LINE L2 582 953 -2361 461 253 41 41 chr3 11474253 11474399 -216050179 - MIR SINE MIR -50 212 67 246 182 45 0 chr3 11475133 11475177 -216049401 + MIR SINE MIR 5 50 -212 * 547 287 126 12 chr3 11475166 11475333 -216049245 - MER91A DNA MER1_type -10 186 1 * 709 282 44 5 chr3 11475333 11475536 -216049042 + MIR SINE MIR 51 261 -1 299 313 188 16 chr3 11475547 11475803 -216048775 - L2 LINE L2 -86 3186 2887 335 207 283 24 chr3 11476107 11476242 -216048336 + MIR3 SINE MIR 12 183 -25 202 239 30 0 chr3 11476952 11477039 -216047539 - MIR SINE MIR -84 124 82 442 260 192 23 chr3 11477574 11477746 -216046832 + MIR SINE MIR 21 212 -50 26 74 0 0 chr3 11477854 11477908 -216046670 + AT_rich Low_complexity Low_complexity 1 54 0 1430 204 95 41 chr3 11478031 11478349 -216046229 - MLT1C LTR MaLR 0 467 117 2155 138 0 28 chr3 11478349 11478669 -216045909 - AluJb SINE Alu -1 311 1 1430 204 95 41 chr3 11478669 11478792 -216045786 - MLT1C LTR MaLR -350 117 2 236 370 65 5 chr3 11479699 11479883 -216044695 - L2 LINE L2 -79 3193 2999 192 276 114 9 chr3 11479882 11479987 -216044591 + L2 LINE L2 2897 3012 -260 * 1699 157 134 3 chr3 11480254 11480604 -216043974 + L1MB3 LINE L1 5788 6183 0 281 228 0 38 chr3 11480642 11480721 -216043857 + GA-rich Low_complexity Low_complexity 4 79 0 182 384 0 0 chr3 11480757 11480830 -216043748 - MIR SINE MIR -7 255 183 210 215 161 43 chr3 11480997 11481090 -216043488 - MIR SINE MIR -50 212 109 409 321 60 30 chr3 11481500 11481668 -216042910 + L2 LINE L2 3097 3269 -3 414 348 41 37 chr3 11482073 11482154 -216042424 + MIR SINE MIR 13 92 -170 2227 122 0 0 chr3 11482154 11482449 -216042129 - AluSg SINE Alu -15 295 1 414 348 41 37 chr3 11482449 11482611 -216041967 + MIR SINE MIR 92 257 -5 265 301 14 0 chr3 11482643 11482716 -216041862 + MER103 DNA DNA 90 163 -3 2308 152 56 12 chr3 11482748 11483156 -216041422 - MSTB LTR MaLR 0 426 1 486 291 66 22 chr3 11483366 11483548 -216041030 - L2 LINE L2 -3 3310 3121 262 210 51 65 chr3 11483569 11483707 -216040871 - L2 LINE L2 -331 2982 2847 1182 289 57 28 chr3 11483999 11484215 -216040363 + MLT1K LTR MaLR 4 212 -264 2068 146 3 0 chr3 11484215 11484523 -216040055 + AluJb SINE Alu 1 309 -3 1182 289 57 28 chr3 11484523 11484766 -216039812 + MLT1K LTR MaLR 212 476 0 273 279 125 10 chr3 11484793 11484897 -216039681 - MIR SINE MIR -69 139 24 629 269 203 9 chr3 11485506 11485718 -216038860 + MIR SINE MIR 7 259 -3 269 238 159 0 chr3 11486036 11486131 -216038447 - MIR SINE MIR -95 113 13 209 361 0 14 chr3 11486110 11486182 -216038396 + L2 LINE L2 3219 3289 -24 * 207 321 69 50 chr3 11487021 11487180 -216037398 - L3 LINE CR1 -20 1557 1396 416 281 81 24 chr3 11487240 11487414 -216037164 + MIR SINE MIR 19 209 -53 1477 226 118 19 chr3 11487557 11488025 -216036553 - MLT1E2 LTR MaLR -1 625 112 260 253 53 21 chr3 11488025 11488120 -216036458 + MLT1C LTR MaLR 1 98 -369 2274 129 0 3 chr3 11488122 11488432 -216036146 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr3 11488461 11488488 -216036090 + AT_rich Low_complexity Low_complexity 1 27 0 1069 195 104 44 chr3 11488488 11488852 -216035726 + MLT1C LTR MaLR 82 467 0 2074 128 0 28 chr3 11488868 11489188 -216035390 - AluJo SINE Alu -1 311 1 329 205 205 12 chr3 11489196 11489279 -216035299 - MLT1E2 LTR MaLR -399 106 8 303 244 23 122 chr3 11489530 11489702 -216034876 + MIR SINE MIR 107 261 -1 257 234 129 53 chr3 11489729 11489900 -216034678 + L1ME4a LINE L1 5932 6115 -6 288 0 0 0 chr3 11489998 11490030 -216034548 + (CA)n Simple_repeat Simple_repeat 2 33 0 437 253 99 31 chr3 11490528 11490690 -216033888 + MIR SINE MIR 1 173 -89 400 69 48 18 chr3 11491241 11491309 -216033269 + AluSg/x SINE Alu 74 135 -165 1643 147 22 56 chr3 11491744 11492064 -216032514 - AluJo SINE Alu 0 312 4 191 374 148 30 chr3 11492330 11492696 -216031882 + L2 LINE L2 2853 3261 -11 287 365 41 14 chr3 11492718 11492863 -216031715 - MIR SINE MIR -15 247 99 2264 48 0 0 chr3 11493198 11493471 -216031107 - L1PA7 LINE L1 -5 6149 5877 291 207 0 0 chr3 11494318 11494376 -216030202 + L1ME3A LINE L1 6102 6159 -11 355 254 105 0 chr3 11494614 11494728 -216029850 - MIR3 SINE MIR -4 204 79 265 186 0 0 chr3 11495739 11495782 -216028796 - MSTA LTR MaLR -385 43 1 418 250 26 9 chr3 11495821 11495937 -216028641 + MER117 DNA MER1_type 1 118 -79 238 298 123 18 chr3 11495982 11496096 -216028482 - MIR3 SINE MIR -48 160 35 652 263 72 16 chr3 11496150 11496344 -216028234 - MIR SINE MIR -1 261 57 258 308 39 10 chr3 11497147 11497251 -216027327 + L2 LINE L2 2951 3057 -215 240 149 0 21 chr3 11497526 11497573 -216027005 + L1ME4a LINE L1 6073 6118 -3 529 289 114 59 chr3 11497726 11497916 -216026662 - L2 LINE L2 -191 3081 2903 2574 157 31 2 chr3 11497916 11498331 -216026247 + MSTA LTR MaLR 1 427 -1 529 289 114 59 chr3 11498331 11498354 -216026224 - L2 LINE L2 -369 2903 2883 2972 176 25 68 chr3 11498354 11498986 -216025592 + MER77 LTR ERV1 1 605 0 529 289 114 59 chr3 11498986 11499448 -216025130 - L2 LINE L2 -389 2883 2370 637 262 140 4 chr3 11500455 11500684 -216023894 + MIR SINE MIR 3 262 0 467 276 115 13 chr3 11500823 11500979 -216023599 - MIR3 SINE MIR -22 186 15 508 202 19 0 chr3 11501055 11501159 -216023419 + LTR16A1 LTR ERVL 18 123 -334 1681 200 17 3 chr3 11501202 11501547 -216023031 + MER63B DNA MER1_type 1 350 -86 744 262 56 25 chr3 11501619 11501905 -216022673 + LTR16A1 LTR ERVL 158 452 -5 1880 162 0 0 chr3 11501905 11502214 -216022364 + AluJo SINE Alu 1 309 -3 222 194 32 16 chr3 11502699 11502761 -216021817 + T-rich Low_complexity Low_complexity 2 64 0 245 176 0 0 chr3 11502763 11502814 -216021764 - L1MB3 LINE L1 -1 6182 6132 238 335 68 0 chr3 11502826 11503017 -216021561 - MER113 DNA MER1_type? -313 208 5 470 293 29 7 chr3 11503017 11503157 -216021421 - MIR3 SINE MIR -51 157 15 245 333 37 9 chr3 11503591 11503699 -216020879 + MIR SINE MIR 43 153 -109 207 263 200 27 chr3 11503778 11503926 -216020652 - MIR SINE MIR -62 200 22 289 150 50 0 chr3 11504087 11504147 -216020431 + MER103 DNA DNA 93 155 -11 519 245 148 0 chr3 11504690 11504845 -216019733 + MER45A DNA AcHobo 1 178 0 322 205 167 39 chr3 11504850 11504928 -216019650 + L2 LINE L2 3147 3234 -38 397 310 136 11 chr3 11505696 11505880 -216018698 - L1ME4a LINE L1 -225 5896 5690 199 316 84 21 chr3 11506573 11506668 -216017910 - L2 LINE L2 -1 3312 3212 556 287 75 11 chr3 11506945 11507119 -216017459 + MER5A DNA MER1_type 2 186 -3 478 224 48 40 chr3 11508060 11508185 -216016393 - MIR SINE MIR -7 255 130 480 290 148 14 chr3 11509035 11509369 -216015209 + LTR16A LTR ERVL 55 445 -12 375 226 54 0 chr3 11509519 11509612 -216014966 + MIR SINE MIR 47 144 -64 529 258 65 97 chr3 11509713 11509992 -216014586 + L2 LINE L2 3002 3271 -1 217 222 0 0 chr3 11510083 11510119 -216014459 - MIR SINE MIR -71 191 156 1578 174 32 9 chr3 11511370 11511686 -216012892 - MER33 DNA MER1_type 0 324 2 2592 143 22 4 chr3 11511921 11512375 -216012203 + L1MB3 LINE L1 5707 6168 -15 579 298 76 25 chr3 11512436 11512634 -216011944 - MIR SINE MIR -37 225 18 1458 273 48 36 chr3 11512646 11513234 -216011344 + L2 LINE L2 2718 3311 -2 267 257 48 67 chr3 11513238 11513265 -216011313 - MIR SINE MIR -61 201 175 498 243 27 0 chr3 11513265 11513376 -216011202 + MER81 DNA DNA 1 114 0 267 257 48 67 chr3 11513376 11513453 -216011125 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 11513545 11513703 -216010875 + MIR SINE MIR 8 180 -62 1110 249 10 21 chr3 11513712 11514113 -216010465 - LTR16A LTR ERVL 0 450 16 351 283 115 37 chr3 11514965 11515156 -216009422 + MIR SINE MIR 23 228 -34 326 313 55 50 chr3 11515431 11515632 -216008946 + L1MC4a LINE L1 5135 5336 -810 562 313 55 30 chr3 11515645 11516062 -216008516 + L1MC4a LINE L1 5394 5824 -297 * 2249 215 19 24 chr3 11516019 11516554 -216008024 + L1MB7 LINE L1 5639 6170 -14 911 169 28 17 chr3 11516561 11516739 -216007839 + AluJo SINE Alu 121 300 -12 1899 133 0 16 chr3 11516774 11517082 -216007496 + AluSx SINE Alu 1 303 -9 1827 157 0 25 chr3 11517888 11518207 -216006371 - AluJo SINE Alu -1 311 1 2121 96 17 0 chr3 11518671 11518964 -216005614 + AluSc SINE Alu 1 298 -11 348 319 124 9 chr3 11518974 11519087 -216005491 + L2 LINE L2 3144 3269 -3 516 337 37 0 chr3 11519168 11519355 -216005223 - MER91A DNA MER1_type -1 195 2 717 283 95 65 chr3 11519765 11520310 -216004268 + L2 LINE L2 2594 3181 -132 327 49 0 0 chr3 11520348 11520389 -216004189 + (CA)n Simple_repeat Simple_repeat 2 42 0 479 275 58 18 chr3 11520513 11520684 -216003894 - MIR SINE MIR -57 205 28 321 285 133 30 chr3 11521525 11521690 -216002888 - MIR3 SINE MIR -9 199 18 3050 163 16 12 chr3 11521717 11522220 -216002358 + MLT2B3 LTR ERVL 3 507 -47 252 279 0 0 chr3 11522222 11522283 -216002295 + (CA)n Simple_repeat Simple_repeat 2 62 0 261 125 71 54 chr3 11522283 11522339 -216002239 + MLT2B3 LTR ERVL 464 520 0 436 306 29 18 chr3 11522481 11522651 -216001927 + MER20B DNA MER1_type 8 179 -604 252 300 38 0 chr3 11522883 11522963 -216001615 - MIR SINE MIR -118 144 62 2138 208 22 7 chr3 11522966 11523428 -216001150 + L1MB3 LINE L1 5715 6183 0 180 0 0 0 chr3 11523843 11523863 -216000715 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 402 281 103 27 chr3 11524223 11524369 -216000209 + L3 LINE CR1 967 1123 -454 249 233 23 70 chr3 11524443 11524529 -216000049 - 7SK RNA RNA -105 88 7 420 207 27 0 chr3 11524695 11524806 -215999772 - MER117 DNA MER1_type -83 114 1 186 193 0 0 chr3 11524830 11524887 -215999691 + T-rich Low_complexity Low_complexity 3 59 0 2098 119 0 16 chr3 11524891 11525202 -215999376 - AluSx SINE Alu -6 306 1 278 49 0 24 chr3 11525202 11525243 -215999335 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 817 144 0 0 chr3 11525246 11525364 -215999214 - FLAM_C SINE Alu -15 118 1 416 300 232 9 chr3 11525367 11525600 -215998978 + L3 LINE CR1 1244 1528 -49 3060 135 4 21 chr3 11525750 11525799 -215998779 + L1MA4 LINE L1 5784 5832 -468 1964 103 41 3 chr3 11525799 11526091 -215998487 + AluY SINE Alu 1 303 -8 3060 135 4 21 chr3 11526091 11526560 -215998018 + L1MA4 LINE L1 5832 6293 -7 187 266 47 16 chr3 11526914 11526978 -215997600 + L3 LINE CR1 650 715 -862 1522 165 0 22 chr3 11527492 11527765 -215996813 + AluJo SINE Alu 15 281 -31 26 30 0 0 chr3 11527774 11527807 -215996771 + AT_rich Low_complexity Low_complexity 1 33 0 298 257 124 26 chr3 11528235 11528348 -215996230 + MLT1K LTR MaLR 128 251 -337 228 291 18 45 chr3 11528642 11528752 -215995826 + LTR67 LTR ERVL 447 553 -4 1128 229 5 0 chr3 11529330 11529535 -215995043 + MER58A DNA MER1_type 1 206 -18 377 279 118 0 chr3 11529596 11529732 -215994846 + MER103 DNA DNA 14 165 -1 305 258 129 8 chr3 11531561 11531693 -215992885 + L3 LINE CR1 1230 1377 -200 936 265 73 34 chr3 11531955 11532283 -215992295 - MER102b DNA MER1_type 0 341 1 450 248 71 71 chr3 11532549 11532747 -215991831 - L3 LINE CR1 -5 1572 1375 688 240 67 19 chr3 11532747 11532955 -215991623 - L3 LINE CR1 -561 1016 799 947 252 75 69 chr3 11533221 11533539 -215991039 - MER102b DNA MER1_type -10 331 12 672 265 112 19 chr3 11533600 11533815 -215990763 - MIR SINE MIR 0 262 28 560 273 13 27 chr3 11534444 11534594 -215989984 - Charlie8 DNA MER1_type -2174 243 96 2727 13 0 3 chr3 11535009 11535320 -215989258 + AluYb8 SINE Alu 1 310 -8 467 274 233 5 chr3 11536124 11536320 -215988258 - MIR SINE MIR 0 262 23 830 271 54 4 chr3 11536333 11536573 -215988005 - MIR SINE MIR -2 260 9 389 269 167 21 chr3 11536576 11536762 -215987816 - L3 LINE CR1 -858 719 507 1547 161 57 10 chr3 11536818 11537116 -215987462 + AluJo SINE Alu 1 312 0 237 319 149 35 chr3 11537837 11537978 -215986600 - L2 LINE L2 -25 3247 3091 323 260 102 68 chr3 11538040 11538217 -215986361 - MIR SINE MIR -70 192 10 231 88 0 0 chr3 11538752 11538786 -215985792 + (CA)n Simple_repeat Simple_repeat 2 35 0 557 172 11 132 chr3 11538923 11539097 -215985481 - MER5A DNA MER1_type -34 155 3 533 250 88 29 chr3 11539324 11539528 -215985050 - MIR SINE MIR -8 254 39 217 213 0 24 chr3 11540052 11540132 -215984446 + L2 LINE L2 3137 3309 -4 1265 83 0 0 chr3 11541505 11541674 -215982904 + AluSg/x SINE Alu 136 304 -8 1869 98 10 48 chr3 11543169 11543302 -215981276 + AluSx SINE Alu 9 145 -167 202 56 56 0 chr3 11543302 11543338 -215981240 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1869 98 10 48 chr3 11543338 11543499 -215981079 + AluSx SINE Alu 145 292 -20 421 253 25 74 chr3 11543833 11543995 -215980583 + MIR SINE MIR 13 166 -96 757 164 0 8 chr3 11544364 11544512 -215980066 + AluSg/x SINE Alu 176 312 0 438 220 106 0 chr3 11544559 11544691 -215979887 + L1ME4a LINE L1 5946 6091 -30 210 327 40 30 chr3 11545069 11545170 -215979408 + L3b LINE CR1 1231 1332 -251 379 263 38 30 chr3 11545533 11545666 -215978912 - L2 LINE L2 -4 3309 3176 3252 128 44 11 chr3 11545676 11546268 -215978310 - MER4B LTR ERV1 0 779 3 182 262 0 0 chr3 11546362 11546404 -215978174 - L2 LINE L2 -277 3036 2995 1455 330 169 30 chr3 11547891 11548372 -215976206 - L3 LINE CR1 -8 1569 1156 2170 98 7 3 chr3 11548372 11548678 -215975900 + AluSx SINE Alu 1 307 -5 1455 330 169 30 chr3 11548678 11549076 -215975502 - L3 LINE CR1 -421 1156 815 1524 170 76 10 chr3 11549076 11549365 -215975213 + AluJb SINE Alu 1 308 -4 1455 330 169 30 chr3 11549365 11549614 -215974964 - L3 LINE CR1 -762 815 283 255 265 48 48 chr3 11550178 11550244 -215974334 + MER5B DNA MER1_type 1 69 -109 1297 136 3 183 chr3 11550244 11550605 -215973973 + AluJb SINE Alu 1 296 -16 255 265 48 48 chr3 11550605 11550621 -215973957 + MER5B DNA MER1_type 68 83 -95 202 118 20 98 chr3 11550659 11550710 -215973868 + MIR3 SINE MIR 113 159 -49 229 290 43 32 chr3 11550784 11550877 -215973701 - MIR3 SINE MIR -38 170 77 693 271 94 36 chr3 11551384 11551541 -215973037 + L2 LINE L2 2927 3108 -205 1441 198 7 16 chr3 11551541 11551844 -215972734 - AluJo SINE Alu -12 300 1 693 271 94 36 chr3 11551844 11551963 -215972615 + L2 LINE L2 3108 3219 -94 211 276 35 0 chr3 11551962 11552020 -215972558 - L2 LINE L2 -8 3305 3246 * 352 272 65 19 chr3 11552232 11552387 -215972191 + MIR SINE MIR 21 146 -62 2365 42 0 7 chr3 11553251 11553561 -215971017 + AluY SINE Alu 1 308 0 411 374 25 5 chr3 11553800 11554003 -215970575 + L2 LINE L2 2732 2938 -376 228 288 12 12 chr3 11554003 11554016 -215970562 - L1MA10 LINE L1 -86 6248 6236 597 215 44 0 chr3 11554016 11554151 -215970427 - L1ME2 LINE L1 -91 6073 5933 410 160 20 60 chr3 11554156 11554256 -215970322 + L1ME2 LINE L1 6009 6104 -60 332 43 0 21 chr3 11554835 11554882 -215969696 + (CAT)n Simple_repeat Simple_repeat 3 48 0 913 155 40 0 chr3 11555185 11555359 -215969219 - L1MC3 LINE L1 0 7785 7605 1347 174 0 107 chr3 11555772 11556071 -215968507 + Tigger7 DNA MER2_type 1 267 -2220 678 152 0 0 chr3 11556069 11556168 -215968410 + Tigger7 DNA MER2_type 2489 2587 0 * 21 0 0 0 chr3 11556671 11556692 -215967886 + AT_rich Low_complexity Low_complexity 1 21 0 274 263 97 79 chr3 11556944 11557058 -215967520 - L2 LINE L2 -43 3270 3155 931 133 13 6 chr3 11557061 11557219 -215967359 + AluSg/x SINE Alu 132 290 -22 418 308 55 52 chr3 11557240 11557568 -215967010 - L2 LINE L2 -171 3142 2814 1159 188 94 42 chr3 11558020 11558250 -215966328 + MER33 DNA MER1_type 1 252 -2333 1935 150 0 6 chr3 11558250 11558564 -215966014 - AluSx SINE Alu 0 312 1 1159 188 94 42 chr3 11558564 11558641 -215965937 + MER33 DNA MER1_type 252 324 0 264 280 187 13 chr3 11558645 11558795 -215965783 + MER20B DNA MER1_type 1 176 -43 402 324 0 10 chr3 11558800 11558902 -215965676 - MIR SINE MIR -76 132 32 315 276 92 0 chr3 11559134 11559232 -215965346 + MIR SINE MIR 31 137 -71 505 306 43 39 chr3 11559350 11559605 -215964973 - L2 LINE L2 0 3313 3058 1093 138 28 22 chr3 11559610 11559791 -215964787 + AluJo SINE Alu 87 268 -44 301 74 19 19 chr3 11559793 11559847 -215964731 + (TAAAA)n Simple_repeat Simple_repeat 1 54 0 2220 278 153 37 chr3 11559857 11560500 -215964078 - L2 LINE L2 -261 3052 2485 1910 208 29 9 chr3 11560500 11560919 -215963659 + L1MB7 LINE L1 5757 6183 -1 2220 278 153 37 chr3 11560919 11561646 -215962932 - L2 LINE L2 -828 2485 1536 222 195 0 0 chr3 11561811 11561852 -215962726 + L2 LINE L2 3221 3261 -11 511 275 21 42 chr3 11561865 11562058 -215962520 - MER5A DNA MER1_type 0 189 1 297 0 0 0 chr3 11563788 11563821 -215960757 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 187 197 0 42 chr3 11564705 11564776 -215959802 + CT-rich Low_complexity Low_complexity 3 70 0 368 293 7 22 chr3 11565271 11565423 -215959155 + MIR SINE MIR 34 182 -64 232 275 247 18 chr3 11566473 11566641 -215957937 + MIR SINE MIR 9 212 -50 2181 113 0 3 chr3 11566660 11566970 -215957608 + AluSg SINE Alu 1 309 -1 286 226 58 123 chr3 11567030 11567185 -215957393 + MIR SINE MIR 87 231 -31 810 185 45 13 chr3 11569273 11569430 -215955148 + FRAM SINE Alu 5 166 0 500 277 82 31 chr3 11569706 11569901 -215954677 - MARNA DNA Mariner -1 585 381 377 234 48 106 chr3 11570035 11570187 -215954391 - MARNA DNA Mariner -393 193 34 393 22 0 0 chr3 11570187 11570233 -215954345 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1609 148 3 39 chr3 11570239 11570523 -215954055 - AluJb SINE Alu -38 274 1 377 234 48 106 chr3 11570523 11570551 -215954027 - MARNA DNA Mariner -557 29 17 465 259 19 0 chr3 11571076 11571184 -215953394 + MIR SINE MIR 132 241 -21 612 62 0 12 chr3 11573790 11573871 -215950707 + MADE1 DNA Mariner 1 80 0 756 258 191 34 chr3 11573934 11574352 -215950226 - L2 LINE L2 -1 3312 2829 708 276 40 0 chr3 11575195 11575394 -215949184 - MER63A DNA MER1_type 0 210 4 270 193 0 0 chr3 11575414 11575471 -215949107 + (CTA)n Simple_repeat Simple_repeat 2 58 0 717 236 130 88 chr3 11576641 11576980 -215947598 - L2 LINE L2 0 3272 2920 2079 92 0 3 chr3 11578054 11578336 -215946242 - AluSc SINE Alu -28 281 1 804 168 105 53 chr3 11578366 11578575 -215946003 - AluJo SINE Alu -92 220 1 21 0 0 0 chr3 11578581 11578602 -215945976 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 11580086 11580112 -215944466 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 244 333 11 68 chr3 11580202 11580386 -215944192 + MIR SINE MIR 36 212 -50 522 318 121 0 chr3 11580537 11580710 -215943868 + MER91A DNA MER1_type 3 196 0 1668 256 90 29 chr3 11580955 11581533 -215943045 + L1MC4a LINE L1 5428 6040 -1768 953 151 29 92 chr3 11581732 11581795 -215942783 - L1MB8 LINE L1 -1 6177 6112 5502 125 21 3 chr3 11581795 11582665 -215941913 + L1MA4A LINE L1 5419 6303 0 953 151 29 92 chr3 11582665 11582839 -215941739 - L1MB8 LINE L1 -66 6112 5955 3350 252 63 57 chr3 11582990 11584478 -215940100 + L1MC4 LINE L1 6431 8039 -3 275 232 74 42 chr3 11585945 11586040 -215938538 - L2 LINE L2 -4 3268 3171 734 283 192 19 chr3 11586040 11586467 -215938111 - MLT1K LTR MaLR 0 588 88 1563 291 38 15 chr3 11587237 11587714 -215936864 - MLT1K LTR MaLR -3 585 98 431 278 198 55 chr3 11588610 11589024 -215935554 - L2 LINE L2 0 3272 2736 516 288 75 57 chr3 11589042 11589323 -215935255 + L2 LINE L2 3005 3290 -23 189 317 33 0 chr3 11589552 11589612 -215934966 + MIR3 SINE MIR 101 162 -46 227 232 0 0 chr3 11590294 11590350 -215934228 + Charlie8 DNA MER1_type 1345 1400 -1017 288 193 145 0 chr3 11590419 11590502 -215934076 - L2 LINE L2 -25 3247 3153 1253 152 115 12 chr3 11590764 11591008 -215933570 - ORSL DNA AcHobo -4 271 3 1250 246 73 27 chr3 11591206 11591617 -215932961 - MLT1K LTR MaLR -5 583 154 189 0 0 0 chr3 11591919 11591940 -215932638 + (TC)n Simple_repeat Simple_repeat 1 21 0 473 257 54 65 chr3 11592503 11592735 -215931843 + MIR SINE MIR 2 230 -32 2044 128 0 29 chr3 11593115 11593428 -215931150 + AluJb SINE Alu 3 306 -6 477 209 18 0 chr3 11593766 11593876 -215930702 - L1ME2 LINE L1 -218 5946 5835 2190 104 0 3 chr3 11593958 11594265 -215930313 - AluSc SINE Alu -3 306 1 12735 198 37 38 chr3 11594419 11596873 -215927705 - L1MB7 LINE L1 0 6995 4540 1850 135 7 3 chr3 11596873 11597194 -215927384 - AluSx SINE Alu 0 322 1 12735 198 37 38 chr3 11597194 11599004 -215925574 - L1MB7 LINE L1 -2455 4540 2761 1733 172 28 8 chr3 11599004 11599364 -215925214 - L1MA6 LINE L1 0 6300 5934 12735 198 37 38 chr3 11599364 11599454 -215925124 - L1MB7 LINE L1 -4234 2761 2672 3692 262 61 18 chr3 11599456 11600570 -215924008 - L1MB7 LINE L1 -5687 1172 11 438 234 177 40 chr3 11601450 11601625 -215922953 + MIR SINE MIR 47 245 -17 426 296 48 0 chr3 11601628 11601753 -215922825 - L2 LINE L2 -1 3312 3182 229 196 0 0 chr3 11601785 11601836 -215922742 + L1MC4 LINE L1 6652 6702 -1340 557 267 18 120 chr3 11601865 11602198 -215922380 - L2 LINE L2 -129 3184 2886 1816 145 0 26 chr3 11602203 11602514 -215922064 + AluJo SINE Alu 1 303 -9 340 343 39 34 chr3 11602516 11602720 -215921858 + L1MC4 LINE L1 7821 8025 -17 522 275 225 39 chr3 11602729 11603187 -215921391 - L2 LINE L2 -399 2915 2373 902 198 0 23 chr3 11604175 11604352 -215920226 - MIR SINE MIR -27 235 63 1759 148 16 30 chr3 11604900 11605203 -215919375 - AluJb SINE Alu -13 299 1 596 172 101 65 chr3 11605203 11605372 -215919206 - MLT1B LTR MaLR -215 175 1 300 262 24 0 chr3 11606074 11606158 -215918420 + MER117 DNA MER1_type 112 197 0 24 0 0 0 chr3 11607726 11607750 -215916828 + AT_rich Low_complexity Low_complexity 1 24 0 210 150 0 0 chr3 11610194 11610234 -215914344 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 600 293 105 39 chr3 11610236 11610570 -215914008 - L2 LINE L2 0 3313 2958 444 256 39 32 chr3 11611312 11611394 -215913184 + MER103 DNA DNA 2 87 -79 1970 135 40 6 chr3 11611394 11611720 -215912858 + MER1B DNA MER1_type 1 337 0 444 256 39 32 chr3 11611720 11611793 -215912785 + MER103 DNA DNA 87 158 -8 268 273 30 0 chr3 11613287 11613353 -215911225 - MIR SINE MIR -126 136 69 763 225 28 34 chr3 11613758 11613936 -215910642 + MIR SINE MIR 22 198 -64 916 255 8 13 chr3 11613998 11614237 -215910341 - MIR SINE MIR -13 249 12 302 352 0 0 chr3 11615215 11615303 -215909275 + L1MC4 LINE L1 6614 6701 -1341 347 318 8 16 chr3 11616501 11616627 -215907951 + MIR SINE MIR 28 152 -110 261 299 127 22 chr3 11617128 11617262 -215907316 - MIR SINE MIR -65 143 1 972 262 20 8 chr3 11620236 11620480 -215904098 - MIR SINE MIR -14 248 2 1933 176 89 0 chr3 11620816 11621175 -215903403 - MSTD LTR MaLR 0 396 6 264 280 64 88 chr3 11621272 11621397 -215903181 - L2 LINE L2 -2 3270 3149 501 288 72 65 chr3 11621560 11621916 -215902662 - MLT1K LTR MaLR -8 580 180 420 176 2 0 chr3 11622023 11622104 -215902474 + MLT1H LTR MaLR 474 549 0 319 310 33 12 chr3 11622596 11622775 -215901803 - MIR3 SINE MIR -64 144 3 427 307 39 7 chr3 11622851 11623004 -215901574 + MIR SINE MIR 19 176 -86 530 293 84 0 chr3 11623161 11623328 -215901250 + MIR3 SINE MIR 7 187 -21 1965 129 0 0 chr3 11623929 11624215 -215900363 + AluSx SINE Alu 14 299 -13 664 247 88 42 chr3 11624227 11624467 -215900111 - MIR SINE MIR -1 261 19 767 248 172 35 chr3 11625227 11625541 -215899037 + L2 LINE L2 2957 3313 0 385 321 172 20 chr3 11625622 11626122 -215898456 - L2 LINE L2 0 3272 2692 1668 160 0 24 chr3 11626124 11626411 -215898167 + AluJo SINE Alu 1 280 -32 204 40 0 0 chr3 11626411 11626436 -215898142 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1976 125 0 3 chr3 11626596 11626914 -215897664 - AluSx SINE Alu 0 317 1 1136 240 79 31 chr3 11627280 11627734 -215896844 - MLT1K LTR MaLR 0 476 1 1414 168 52 18 chr3 11627806 11627922 -215896656 + AluJo SINE Alu 1 111 -201 498 17 0 0 chr3 11627922 11627981 -215896597 + (CA)n Simple_repeat Simple_repeat 2 60 0 1414 168 52 18 chr3 11627981 11628150 -215896428 + AluJo SINE Alu 111 296 -16 502 299 96 0 chr3 11628356 11628513 -215896065 + MIR SINE MIR 12 183 -79 578 211 149 19 chr3 11628654 11628815 -215895763 - MIR SINE MIR -18 244 63 369 265 117 41 chr3 11629268 11629611 -215894967 - L1MC5 LINE L1 -35 7926 7558 269 253 73 72 chr3 11629674 11629760 -215894818 - L1MC5 LINE L1 -519 7495 7411 1398 168 37 78 chr3 11629760 11630081 -215894497 - AluJb SINE Alu -1 311 4 269 253 73 72 chr3 11630081 11630900 -215893678 - L1MC5 LINE L1 -603 7411 6697 407 200 53 0 chr3 11630902 11630977 -215893601 - MIR SINE MIR -175 87 9 586 299 47 14 chr3 11631050 11631261 -215893317 - MIR SINE MIR -23 239 22 193 241 41 152 chr3 11631398 11631543 -215893035 - L2 LINE L2 -4 3268 3140 530 252 106 57 chr3 11632041 11632512 -215892066 - MLT1H LTR MaLR 0 549 12 1372 218 27 66 chr3 11632616 11632855 -215891723 + MLT1K LTR MaLR 196 414 -174 2098 108 13 7 chr3 11632855 11633162 -215891416 + AluSg SINE Alu 1 309 -1 1372 218 27 66 chr3 11633162 11633331 -215891247 + MLT1K LTR MaLR 414 588 0 219 240 0 20 chr3 11633434 11633484 -215891094 + L2 LINE L2 3265 3313 0 235 302 103 48 chr3 11633810 11633936 -215890642 + L2 LINE L2 2640 2772 -542 706 254 52 0 chr3 11633945 11634118 -215890460 - MIR SINE MIR 0 262 81 619 278 69 81 chr3 11634143 11634503 -215890075 + L2 LINE L2 2957 3312 -1 530 167 0 9 chr3 11634503 11634617 -215889961 + GA-rich Low_complexity Low_complexity 1 113 0 847 173 38 16 chr3 11634799 11634984 -215889594 + MER53 DNA DNA 1 189 0 261 227 34 23 chr3 11635529 11635617 -215888961 + CT-rich Low_complexity Low_complexity 1 89 0 2652 122 78 7 chr3 11635925 11636376 -215888202 - MER31A LTR ERV1 -2 483 1 228 354 42 0 chr3 11636537 11636633 -215887945 + MIR SINE MIR 107 206 -56 504 238 108 90 chr3 11637414 11637746 -215886832 - MER113 DNA MER1_type? -34 487 150 193 257 73 83 chr3 11637857 11637966 -215886612 + MIR SINE MIR 105 212 -50 570 239 102 11 chr3 11638098 11638274 -215886304 + MIR SINE MIR 13 204 -58 261 260 0 26 chr3 11638288 11638365 -215886213 + L2 LINE L2 3238 3312 -1 292 304 265 6 chr3 11638693 11638874 -215885704 - L3 LINE CR1 -2 1575 1348 429 196 65 36 chr3 11639490 11639628 -215884950 - L1ME4a LINE L1 -11 6110 5969 232 306 0 0 chr3 11639702 11639764 -215884814 + MIR SINE MIR 127 188 -74 415 155 0 0 chr3 11639818 11639889 -215884689 - L1ME4a LINE L1 -265 5856 5786 1733 158 34 0 chr3 11640075 11640372 -215884206 - AluJo SINE Alu -5 307 1 301 212 85 51 chr3 11640379 11640497 -215884081 - L1MC4a LINE L1 -1857 5951 5830 673 176 17 0 chr3 11640499 11640618 -215883960 - AluSg/x SINE Alu -6 306 186 185 279 202 0 chr3 11642289 11642393 -215882185 + MIR SINE MIR 132 256 -6 458 194 32 95 chr3 11642455 11642623 -215881955 - L1MB7 LINE L1 -1 6183 6018 1398 192 77 15 chr3 11642927 11643265 -215881313 - L1M4 LINE L1 -1349 4621 4263 1456 211 62 59 chr3 11643268 11643756 -215880822 - L1M4 LINE L1 -1812 4158 3670 2423 170 70 66 chr3 11643827 11644549 -215880029 + Tigger7 DNA MER2_type 3 2485 -2 415 266 176 63 chr3 11644762 11645172 -215879406 - L1M4 LINE L1 -5234 657 202 440 194 46 23 chr3 11647130 11647305 -215877273 + (TA)n Simple_repeat Simple_repeat 1 179 0 944 112 22 0 chr3 11647305 11647439 -215877139 + Tigger5 DNA MER2_type 2 138 -2185 601 121 11 0 chr3 11647431 11647522 -215877056 + Tigger5 DNA MER2_type 2232 2323 0 * 21 0 0 0 chr3 11647522 11647543 -215877035 + AT_rich Low_complexity Low_complexity 1 21 0 720 198 167 5 chr3 11647543 11647735 -215876843 + MIR SINE MIR 18 240 -22 441 130 0 26 chr3 11647744 11647821 -215876757 + MER116 DNA Mariner 6 80 0 1253 136 5 5 chr3 11648080 11648279 -215876299 + MLT1A2-int LTR MaLR 1537 1735 0 1525 215 25 25 chr3 11648283 11648641 -215875937 + MLT1A2 LTR MaLR 6 363 -11 7976 145 68 37 chr3 11648646 11650074 -215874504 - L1MCa LINE L1 -4315 2111 730 2045 100 4 18 chr3 11650074 11650353 -215874225 + AluSx SINE Alu 7 281 -31 185 0 40 0 chr3 11650363 11650388 -215874190 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7976 145 68 37 chr3 11650388 11650876 -215873702 - L1MCa LINE L1 -5704 722 32 25 75 0 0 chr3 11651443 11651496 -215873082 + AT_rich Low_complexity Low_complexity 1 53 0 1373 143 90 23 chr3 11653413 11653691 -215870887 - L1MD3 LINE L1 -1114 6881 6616 4241 118 49 22 chr3 11653961 11654632 -215869946 - Tigger3(Golem) DNA MER2_type -1 3027 2333 2523 72 0 0 chr3 11654632 11654939 -215869639 + AluSc SINE Alu 1 307 -2 4241 118 49 22 chr3 11654939 11654998 -215869580 - Tigger3(Golem) DNA MER2_type -695 2333 2277 433 284 0 0 chr3 11654975 11655077 -215869501 - Tigger3(Golem) DNA MER2_type -2907 122 21 * 1221 177 148 23 chr3 11655192 11655497 -215869081 + MER2 DNA MER2_type 1 343 -1 516 203 7 20 chr3 11655713 11655866 -215868712 + CT-rich Low_complexity Low_complexity 4 154 0 860 179 0 0 chr3 11655878 11656012 -215868566 - FRAM SINE Alu -39 137 4 1453 243 69 6 chr3 11656033 11656540 -215868038 - L1MEc LINE L1 -2578 3637 3099 375 164 72 53 chr3 11656576 11656728 -215867850 - L1MEc LINE L1 -3197 3018 2864 489 282 145 31 chr3 11656729 11657307 -215867271 - L1MEc LINE L1 -5044 1352 709 419 350 32 59 chr3 11657631 11657904 -215866674 - L1MEc LINE L1 -6011 385 123 2304 157 55 0 chr3 11657904 11658306 -215866272 - MSTA LTR MaLR -4 424 1 419 350 32 59 chr3 11658306 11658406 -215866172 - L1MEc LINE L1 -6273 123 22 811 236 121 0 chr3 11659418 11659617 -215864961 + MER58A DNA MER1_type 2 224 0 23 97 0 0 chr3 11661250 11661322 -215863256 + AT_rich Low_complexity Low_complexity 1 72 0 334 256 12 0 chr3 11662606 11662692 -215861886 - MER103 DNA DNA -71 95 9 405 320 0 56 chr3 11663484 11663662 -215860916 + MER5A DNA MER1_type 15 182 -7 193 421 69 0 chr3 11664063 11664265 -215860313 + L2 LINE L2 2227 2442 -872 748 268 49 16 chr3 11664791 11665034 -215859544 + MIR SINE MIR 12 262 0 2082 261 118 29 chr3 11665189 11666892 -215857686 - L1ME3A LINE L1 -14 6156 4297 3283 201 65 49 chr3 11666920 11667278 -215857300 - L1ME1 LINE L1 -3 6557 6206 2298 89 0 0 chr3 11667278 11667595 -215856983 - AluSg SINE Alu 0 317 1 3283 201 65 49 chr3 11667595 11668757 -215855821 - L1ME1 LINE L1 -354 6206 5027 1356 251 73 27 chr3 11668951 11669469 -215855109 - L1ME1 LINE L1 -1537 5003 4462 588 207 152 0 chr3 11669618 11669816 -215854762 - L1ME1 LINE L1 -2070 4470 4243 3146 163 65 45 chr3 11669818 11670465 -215854113 - L1MB8 LINE L1 -2 6176 5512 2252 86 0 17 chr3 11670465 11670766 -215853812 + AluSx SINE Alu 2 297 -15 3146 163 65 45 chr3 11670766 11670830 -215853748 - L1MB8 LINE L1 -666 5512 5451 2133 245 99 27 chr3 11670889 11672329 -215852249 - L1ME1 LINE L1 -2737 3803 2302 43488 45 6 0 chr3 11672341 11678456 -215846122 - L1PA4 LINE L1 -1 6154 2 706 225 70 41 chr3 11678459 11678703 -215845875 - L1ME1 LINE L1 -4444 2277 2027 1544 166 61 14 chr3 11678759 11679036 -215845542 - AluJo SINE Alu -20 292 3 396 194 28 28 chr3 11679040 11679148 -215845430 - L1ME1 LINE L1 -4681 2040 1933 * 2756 264 76 60 chr3 11679136 11680100 -215844478 - L1MC4 LINE L1 0 8042 7046 2502 65 10 0 chr3 11680100 11680408 -215844170 - AluY SINE Alu 0 311 1 2756 264 76 60 chr3 11680408 11680860 -215843718 - L1MC4 LINE L1 -996 7046 6603 1648 202 30 8 chr3 11680908 11681274 -215843304 - L1ME1 LINE L1 -5279 1264 891 1087 277 72 57 chr3 11681444 11681969 -215842609 - L1ME1 LINE L1 -5573 967 19 2380 253 187 27 chr3 11681974 11682066 -215842512 - L1MCa LINE L1 -3660 3281 3205 2361 95 0 0 chr3 11682066 11682371 -215842207 - AluSq SINE Alu -8 305 1 2380 253 187 27 chr3 11682371 11683852 -215840726 - L1MCa LINE L1 -3736 3205 1447 881 276 14 14 chr3 11683964 11684185 -215840393 - L1MCa LINE L1 -5395 1028 808 726 295 54 76 chr3 11684290 11684524 -215840054 - L1MCa LINE L1 -5824 599 361 2553 59 0 0 chr3 11684524 11684827 -215839751 + AluY SINE Alu 1 303 -8 726 295 54 76 chr3 11684827 11685186 -215839392 - L1MCa LINE L1 -6062 361 19 2302 70 3 35 chr3 11685237 11685550 -215839028 - AluY SINE Alu -8 303 1 563 190 52 40 chr3 11685872 11686046 -215838532 - L1MC5 LINE L1 -53 7908 7733 590 212 15 0 chr3 11686513 11686650 -215837928 - L1MD3 LINE L1 -10 7985 7847 229 208 19 19 chr3 11687088 11687141 -215837437 + MIR3 SINE MIR 155 207 -1 28 61 0 0 chr3 11687749 11687798 -215836780 + AT_rich Low_complexity Low_complexity 1 49 0 185 302 0 0 chr3 11688636 11688679 -215835899 + L2 LINE L2 3263 3305 -8 1389 261 84 58 chr3 11689342 11689764 -215834814 - HAL1 LINE L1 -6 2501 2091 2271 57 23 27 chr3 11689764 11690064 -215834514 - AluY SINE Alu -12 299 1 1389 261 84 58 chr3 11690064 11690453 -215834125 - HAL1 LINE L1 -416 2091 1669 1165 68 125 6 chr3 11690464 11690640 -215833938 - MER30 DNA MER1_type -33 197 1 433 299 0 12 chr3 11690703 11690870 -215833708 - HAL1 LINE L1 -893 1614 1450 236 314 177 65 chr3 11690870 11691414 -215833164 + L2 LINE L2 2488 3087 -185 551 291 26 32 chr3 11691451 11691640 -215832938 - L2 LINE L2 0 3313 3126 1104 180 108 57 chr3 11691691 11692024 -215832554 - MLT1C LTR MaLR -2 465 116 687 253 37 60 chr3 11692024 11692353 -215832225 - HUERS-P2 LTR ERV1 -2258 830 4 406 212 68 48 chr3 11692549 11692695 -215831883 - LTR28 LTR ERV1 -465 555 407 497 257 123 12 chr3 11692793 11692964 -215831614 - LTR1 LTR ERV1 -568 217 28 439 164 0 0 chr3 11692967 11693040 -215831538 - Charlie1 DNA MER1_type -56 2705 2633 945 212 187 15 chr3 11693045 11693371 -215831207 + L1MEc LINE L1 40 421 -5975 735 139 16 0 chr3 11693378 11693500 -215831078 + L1M4 LINE L1 2777 2900 -3246 345 106 224 0 chr3 11693500 11693585 -215830993 - Charlie1 DNA MER1_type -112 2649 2546 399 272 37 31 chr3 11693618 11693780 -215830798 + L1MEc LINE L1 29 191 -6205 623 242 53 44 chr3 11693846 11694073 -215830505 - L2 LINE L2 -1392 1922 1694 850 237 42 19 chr3 11694103 11694318 -215830260 + MER112 DNA MER1_type 1 220 -40 722 319 68 11 chr3 11694360 11694711 -215829867 - L2 LINE L2 -1743 1571 1201 1736 174 82 27 chr3 11696073 11696476 -215828102 - LTR37A LTR ERV1 -1 425 1 2079 140 10 7 chr3 11697333 11697640 -215826938 - AluSx SINE Alu -4 308 1 883 135 24 0 chr3 11697645 11697771 -215826807 - AluSq/x SINE Alu -179 133 5 3466 190 61 23 chr3 11698548 11699299 -215825279 - L1MB4 LINE L1 0 6180 5401 27 29 0 0 chr3 11701097 11701131 -215823447 + AT_rich Low_complexity Low_complexity 1 34 0 366 80 0 0 chr3 11701971 11702021 -215822557 + (CA)n Simple_repeat Simple_repeat 2 51 0 2223 108 0 20 chr3 11702295 11702601 -215821977 - AluSx SINE Alu -12 300 1 190 248 55 128 chr3 11703826 11703935 -215820643 - MIR SINE MIR -117 145 45 334 303 163 20 chr3 11704490 11704741 -215819837 + L1MC4a LINE L1 5888 6174 -1634 2231 98 20 0 chr3 11705330 11705625 -215818953 + AluSx SINE Alu 1 301 -11 187 271 0 0 chr3 11705857 11705905 -215818673 + MIR SINE MIR 104 151 -111 1829 153 26 19 chr3 11706391 11706699 -215817879 + AluJo SINE Alu 1 310 -2 624 317 45 18 chr3 11707335 11707559 -215817019 - MIR SINE MIR -6 256 27 184 314 0 0 chr3 11708684 11708754 -215815824 - L2 LINE L2 -2526 788 719 242 29 29 0 chr3 11709287 11709322 -215815256 + (TA)n Simple_repeat Simple_repeat 2 37 0 460 205 116 0 chr3 11709351 11709463 -215815115 + MER106B DNA MER1_type 932 1056 -3 381 203 60 40 chr3 11709774 11709906 -215814672 - L1ME1 LINE L1 -141 6023 5884 1427 121 157 0 chr3 11710251 11710499 -215814079 - MER7A DNA MER2_type 0 346 62 655 335 102 18 chr3 11710512 11710947 -215813631 + L2 LINE L2 2682 3163 -109 587 229 117 32 chr3 11710992 11711180 -215813398 - MIR SINE MIR -58 204 1 559 301 7 13 chr3 11711572 11711725 -215812853 - MIR3 SINE MIR -21 187 36 1409 245 47 53 chr3 11712112 11712619 -215811959 - MER74B LTR ERVL -45 577 74 832 281 25 0 chr3 11712633 11712829 -215811749 + L1M4 LINE L1 347 547 -5995 184 277 0 21 chr3 11712892 11712939 -215811639 + MIR SINE MIR 100 145 -63 295 314 20 33 chr3 11712970 11713123 -215811455 + L2 LINE L2 2366 2516 -798 674 233 82 0 chr3 11713128 11713274 -215811304 - MER5A DNA MER1_type -1 188 31 201 297 16 0 chr3 11713591 11713655 -215810923 + L2 LINE L2 2921 2985 -287 334 114 43 57 chr3 11713760 11713830 -215810748 + L2 LINE L2 3245 3313 0 5747 147 13 16 chr3 11713942 11714868 -215809710 + MER49 LTR ERV1 1 923 0 1652 210 54 39 chr3 11715992 11716382 -215808196 + L1M4 LINE L1 10 405 -6137 * 2897 224 27 38 chr3 11716381 11717045 -215807533 + L1M4 LINE L1 341 997 -5545 594 259 48 48 chr3 11717051 11717402 -215807176 - L1MCa LINE L1 -5008 1933 1583 * 3008 247 98 48 chr3 11717398 11718690 -215805888 - L1MCa LINE L1 -5051 1372 17 216 0 0 0 chr3 11719318 11719342 -215805236 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 245 246 130 0 chr3 11720578 11720647 -215803931 - L2 LINE L2 -5 3267 3190 522 171 55 75 chr3 11720660 11720806 -215803772 + MER20 DNA MER1_type 1 143 -76 1450 169 75 52 chr3 11720811 11721160 -215803418 - MLT1B LTR MaLR 0 390 34 341 222 0 0 chr3 11721194 11721257 -215803321 + MER20 DNA MER1_type 154 216 -3 303 243 0 72 chr3 11722504 11722615 -215801963 + CT-rich Low_complexity Low_complexity 4 106 0 256 353 0 0 chr3 11722636 11722704 -215801874 - L2 LINE L2 -71 3201 3134 1352 172 57 102 chr3 11722878 11723232 -215801346 + MLT1A1 LTR MaLR 21 358 -7 405 70 0 0 chr3 11723414 11723471 -215801107 + (CA)n Simple_repeat Simple_repeat 2 58 0 481 271 58 16 chr3 11723519 11723707 -215800871 - L1ME LINE L1 -304 5817 5622 1434 140 68 5 chr3 11724023 11724244 -215800334 + MER46A DNA MER2_type 2 236 0 226 244 126 0 chr3 11725568 11725687 -215798891 + L1M4 LINE L1 2525 2658 -3986 261 259 333 0 chr3 11725701 11725848 -215798730 - MIR SINE MIR 0 262 67 192 224 66 79 chr3 11726452 11726528 -215798050 + MIR3 SINE MIR 94 168 -40 * 325 253 35 11 chr3 11726519 11726606 -215797972 - MIR3 SINE MIR -6 202 114 342 222 146 58 chr3 11727164 11727198 -215797380 + L2 LINE L2 708 738 -2576 1046 184 0 0 chr3 11727198 11727366 -215797212 - FAM SINE Alu -7 168 1 342 222 146 58 chr3 11727366 11727673 -215796905 + L2 LINE L2 738 1079 -2235 602 303 21 30 chr3 11727678 11727912 -215796666 + L2 LINE L2 2036 2267 -1047 239 182 57 102 chr3 11727942 11728030 -215796548 + LTR48B LTR ERV1 387 470 -174 605 207 106 28 chr3 11728047 11728226 -215796352 + L2 LINE L2 2258 2450 -864 183 42 0 0 chr3 11728383 11728407 -215796171 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1886 104 41 11 chr3 11728905 11729008 -215795570 - L1M3 LINE L1 -588 5583 5485 291 28 0 0 chr3 11729008 11729044 -215795534 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1886 104 41 11 chr3 11729044 11729237 -215795341 - L1M3 LINE L1 -686 5485 5273 1208 297 55 27 chr3 11729237 11729482 -215795096 + L2 LINE L2 2462 2699 -614 2374 46 0 3 chr3 11729482 11729794 -215794784 + AluY SINE Alu 1 311 0 1208 297 55 27 chr3 11729794 11730374 -215794204 + L2 LINE L2 2699 3308 -5 345 303 38 15 chr3 11730401 11730533 -215794045 + L2 LINE L2 3134 3268 -4 364 291 48 0 chr3 11731347 11731450 -215793128 - MIR3 SINE MIR -18 190 83 221 342 40 13 chr3 11731527 11731603 -215792975 + MIR SINE MIR 68 145 -63 737 278 134 35 chr3 11731748 11732181 -215792397 - L1MC4a LINE L1 -188 5933 5660 333 62 0 0 chr3 11732181 11732229 -215792349 + (TG)n Simple_repeat Simple_repeat 1 48 0 737 278 134 35 chr3 11732229 11732350 -215792228 - L1MC4a LINE L1 -461 5660 5552 253 254 0 0 chr3 11732731 11732786 -215791792 - MIR3 SINE MIR -3 205 151 475 327 117 30 chr3 11732936 11733303 -215791275 + L3 LINE CR1 1174 1572 -5 670 185 123 0 chr3 11733387 11733517 -215791061 - Tigger5 DNA MER2_type 0 2323 2178 1910 205 82 23 chr3 11733563 11734037 -215790541 - MLT1D LTR MaLR 0 505 4 747 144 0 0 chr3 11734414 11734539 -215790039 + (CA)n Simple_repeat Simple_repeat 2 126 0 2190 117 7 7 chr3 11734707 11735016 -215789562 + AluSx SINE Alu 1 309 -3 630 311 34 8 chr3 11736000 11736238 -215788340 - LTR16B LTR ERVL 0 464 221 190 274 137 39 chr3 11736704 11736806 -215787772 - L2 LINE L2 -38 3234 3123 185 365 37 19 chr3 11737493 11737600 -215786978 + MIR3 SINE MIR 88 196 -12 2089 106 0 0 chr3 11737998 11738271 -215786307 - AluSg SINE Alu -37 273 1 2372 251 29 40 chr3 11738274 11738990 -215785588 - L1MEc LINE L1 -5579 817 110 334 119 0 90 chr3 11739026 11739093 -215785485 - MLT2B2 LTR ERVL -2 552 458 437 97 14 0 chr3 11739093 11739165 -215785413 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 1953 189 109 22 chr3 11739168 11739580 -215784998 - MLT2B2 LTR ERVL -61 454 7 21667 150 20 9 chr3 11739582 11741241 -215783337 - ERVL-B2 LTR ERVL -3 5761 4122 2241 114 0 10 chr3 11741241 11741548 -215783030 + AluSx SINE Alu 1 304 -8 21667 150 20 9 chr3 11741548 11743994 -215780584 - ERVL-B2 LTR ERVL -1642 4122 1627 402 159 0 0 chr3 11744369 11744432 -215780146 - FLAM SINE Alu -7 126 64 234 278 287 0 chr3 11744659 11744774 -215779804 - MIR SINE MIR 0 262 115 331 277 0 0 chr3 11744774 11744857 -215779721 + L1MD3 LINE L1 7126 7208 -787 472 285 74 53 chr3 11744917 11745201 -215779377 + L3 LINE CR1 1251 1540 -37 976 268 57 69 chr3 11745544 11746036 -215778542 + MLT2F LTR ERVL 17 502 -161 495 190 0 30 chr3 11746098 11746198 -215778380 - FLAM_A SINE Alu -6 136 40 456 243 0 0 chr3 11746199 11746306 -215778272 + MLT2F LTR ERVL 547 653 -10 330 267 40 0 chr3 11746503 11746604 -215777974 + MIR SINE MIR 39 143 -119 1622 271 96 7 chr3 11746724 11747266 -215777312 - MLT1E LTR MaLR -3 590 1 193 294 44 44 chr3 11748188 11748324 -215776254 + MIR3 SINE MIR 56 191 -17 311 333 0 19 chr3 11748696 11748801 -215775777 - MER5B DNA MER1_type -45 133 31 569 262 17 29 chr3 11749025 11749197 -215775381 - MIR SINE MIR -73 189 20 468 104 0 39 chr3 11749352 11749429 -215775149 + MER31B LTR ERV1 1 74 -392 2194 110 20 0 chr3 11749480 11749781 -215774797 + AluSg SINE Alu 1 307 -3 300 111 0 0 chr3 11749783 11749828 -215774750 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 2729 138 0 45 chr3 11749828 11750198 -215774380 + L1MA7 LINE L1 5772 6116 -175 1620 146 8 19 chr3 11750198 11750459 -215774119 + AluJo SINE Alu 42 299 -13 2729 138 0 45 chr3 11750459 11750579 -215773999 + L1MA7 LINE L1 6116 6240 -51 1050 191 14 9 chr3 11750579 11750794 -215773784 + AluJo SINE Alu 87 302 -10 389 95 0 0 chr3 11750795 11750858 -215773720 + L1MA7 LINE L1 6229 6291 0 1233 207 68 54 chr3 11750861 11751213 -215773365 + MER31B LTR ERV1 110 466 0 181 329 80 36 chr3 11751820 11751957 -215772621 - L2 LINE L2 -9 3263 3121 1077 251 109 29 chr3 11752359 11752773 -215771805 + MLT1L LTR MaLR 160 606 -9 21 36 0 0 chr3 11753769 11753797 -215770781 + AT_rich Low_complexity Low_complexity 1 28 0 659 281 107 8 chr3 11753979 11754232 -215770346 + MLT1L LTR MaLR 98 375 -240 181 383 49 0 chr3 11755033 11755114 -215769464 - L2 LINE L2 -50 3222 3138 1224 180 38 119 chr3 11755195 11755589 -215768989 - MLT1A1 LTR MaLR 0 365 4 579 265 7 7 chr3 11756516 11756652 -215767926 - L2 LINE L2 0 3313 3178 241 233 17 0 chr3 11756961 11757021 -215767557 + MER5B DNA MER1_type 7 67 -111 388 291 0 27 chr3 11757024 11757172 -215767406 - MER5B DNA MER1_type -34 144 1 2179 113 65 14 chr3 11757252 11757606 -215766972 - THE1C LTR MaLR -3 372 1 222 238 112 31 chr3 11757608 11757768 -215766810 + MER5A DNA MER1_type 1 189 0 457 228 198 25 chr3 11757885 11758047 -215766531 - MIR SINE MIR -41 221 32 2253 209 122 0 chr3 11759520 11760022 -215764556 + MER119 DNA MER1_type 3 565 -18 487 252 8 8 chr3 11760885 11761008 -215763570 + MIR SINE MIR 32 154 -108 362 202 109 59 chr3 11761137 11761256 -215763322 - MIR SINE MIR -41 167 43 1755 151 49 3 chr3 11761462 11761746 -215762832 + AluJo SINE Alu 1 297 -15 988 258 135 43 chr3 11762189 11762356 -215762222 - MLT1H LTR MaLR -15 534 384 2736 196 29 7 chr3 11762356 11762902 -215761676 + MER74A LTR ERVL 1 558 0 988 258 135 43 chr3 11762902 11763223 -215761355 - MLT1H LTR MaLR -165 384 1 228 311 39 19 chr3 11763235 11763338 -215761240 + MIR SINE MIR 84 188 -74 1369 139 42 0 chr3 11763470 11763685 -215760893 + AluJb SINE Alu 85 308 -4 348 280 128 45 chr3 11764601 11765001 -215759577 + LTR67 LTR ERVL 101 533 -24 217 254 51 0 chr3 11765130 11765189 -215759389 - MIR SINE MIR -73 189 128 872 271 58 27 chr3 11765198 11765526 -215759052 - L1ME LINE L1 -446 5724 5387 2165 101 37 17 chr3 11765540 11765838 -215758740 + AluSx SINE Alu 2 305 -7 4998 173 44 33 chr3 11765839 11767350 -215757228 - L1MC2 LINE L1 -55 6289 4761 1741 163 61 0 chr3 11767350 11767644 -215756934 - AluJb SINE Alu 0 312 1 4998 173 44 33 chr3 11767644 11767857 -215756721 - L1MC2 LINE L1 -1583 4761 4552 1695 247 125 72 chr3 11767857 11768187 -215756391 - L1ME LINE L1 -746 5400 5089 1109 176 88 0 chr3 11768187 11768391 -215756187 - MER58A DNA MER1_type -2 222 1 1695 247 125 72 chr3 11768391 11768403 -215756175 - L1ME LINE L1 -1057 5089 5079 914 150 56 94 chr3 11768403 11768616 -215755962 + MER3 DNA MER1_type 5 209 0 1695 247 125 72 chr3 11768616 11768992 -215755586 - L1ME LINE L1 -1067 5079 4724 417 39 0 0 chr3 11768992 11769043 -215755535 + (CA)n Simple_repeat Simple_repeat 1 51 0 1695 247 125 72 chr3 11769043 11769186 -215755392 - L1ME LINE L1 -1422 4724 4590 213 39 0 0 chr3 11769186 11769212 -215755366 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1526 159 46 32 chr3 11769214 11769497 -215755081 - AluJb SINE Alu -25 287 1 1695 247 125 72 chr3 11769497 11769759 -215754819 - L1ME LINE L1 -1556 4590 4343 1738 158 29 35 chr3 11769759 11770070 -215754508 - AluSx SINE Alu -3 309 1 1695 247 125 72 chr3 11770070 11770221 -215754357 - L1ME LINE L1 -1803 4343 4052 948 271 165 12 chr3 11770265 11770918 -215753660 - L1ME LINE L1 -2299 3847 3095 * 3189 230 75 18 chr3 11770915 11772021 -215752557 - L1ME3A LINE L1 0 6170 5003 2170 137 8 42 chr3 11772021 11772400 -215752178 - MER47A DNA MER2_type 0 366 1 841 163 105 77 chr3 11772436 11772645 -215751933 - MER20 DNA MER1_type -1 218 4 772 167 0 0 chr3 11772711 11772843 -215751735 - AluSq/x SINE Alu -180 133 2 720 232 110 57 chr3 11772855 11773209 -215751369 - L1ME3A LINE L1 -1949 4197 3825 35 0 0 0 chr3 11773437 11773472 -215751106 + AT_rich Low_complexity Low_complexity 1 35 0 892 66 0 25 chr3 11773715 11773837 -215750741 + AluY SINE Alu 193 311 0 524 288 139 24 chr3 11774055 11774472 -215750106 - L1ME2 LINE L1 -213 5951 5487 1948 266 96 54 chr3 11774578 11774632 -215749946 - L1ME2 LINE L1 -786 5360 5310 2324 177 115 13 chr3 11774632 11775100 -215749478 - MLT2B1 LTR ERVL 0 520 5 1948 266 96 54 chr3 11775100 11775158 -215749420 - L1ME2 LINE L1 -836 5310 5256 904 143 52 81 chr3 11775158 11775317 -215749261 + MER3 DNA MER1_type 2 155 -54 2043 127 3 7 chr3 11775317 11775609 -215748969 - AluSq SINE Alu -22 291 1 904 143 52 81 chr3 11775609 11775659 -215748919 + MER3 DNA MER1_type 155 205 -4 1948 266 96 54 chr3 11775659 11775999 -215748579 - L1ME2 LINE L1 -890 5256 4932 975 256 96 37 chr3 11775999 11776491 -215748087 - LTR33 LTR ERVL 0 521 1 1948 266 96 54 chr3 11776491 11777458 -215747120 - L1ME2 LINE L1 -1214 4932 3879 214 268 56 14 chr3 11777600 11777671 -215746907 + L2 LINE L2 3191 3264 -8 189 195 0 0 chr3 11778334 11778375 -215746203 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 275 250 12 12 chr3 11778433 11778513 -215746065 - L2 LINE L2 0 3272 3193 237 345 90 23 chr3 11778773 11778950 -215745628 - L2 LINE L2 -425 2889 2701 183 272 65 33 chr3 11779015 11779107 -215745471 - L2 LINE L2 -234 3038 2944 627 291 13 0 chr3 11779311 11779462 -215745116 + MIR3 SINE MIR 8 160 -48 729 232 221 79 chr3 11779792 11780087 -215744491 - MLT1H LTR MaLR 0 549 297 1569 182 67 12 chr3 11780087 11780433 -215744145 + MLT1A1 LTR MaLR 1 365 0 729 232 221 79 chr3 11780433 11780603 -215743975 - MLT1H LTR MaLR -252 297 18 329 311 75 66 chr3 11780641 11780975 -215743603 - MLT1H-int LTR MaLR -24 1347 1011 340 218 160 58 chr3 11781964 11782170 -215742408 - L2 LINE L2 -5 3308 3082 294 331 0 14 chr3 11782393 11782541 -215742037 + MIR3 SINE MIR 24 169 -39 201 292 223 0 chr3 11782909 11783039 -215741539 - MIR SINE MIR 0 262 104 233 287 11 11 chr3 11784492 11784579 -215739999 + MER5A DNA MER1_type 89 175 -14 1599 226 110 26 chr3 11784993 11785458 -215739120 - MLT1D LTR MaLR 0 505 2 285 310 55 14 chr3 11786003 11786148 -215738430 - L2 LINE L2 -965 2349 2199 2499 59 7 3 chr3 11786950 11787254 -215737324 - AluY SINE Alu -6 305 1 279 264 46 0 chr3 11789085 11789172 -215735406 - MIR SINE MIR -80 182 92 386 224 245 14 chr3 11789503 11789650 -215734928 - MIR SINE MIR -70 192 12 1857 158 20 3 chr3 11789783 11790087 -215734491 - AluSx SINE Alu -3 309 1 257 276 97 37 chr3 11790415 11790549 -215734029 - MIR SINE MIR -67 195 54 786 212 22 36 chr3 11792163 11792385 -215732193 - L1ME3 LINE L1 0 6162 5944 1148 236 25 55 chr3 11792406 11792576 -215732002 - L1ME2 LINE L1 -1 6958 6784 1831 107 7 77 chr3 11792576 11792875 -215731703 - AluSx SINE Alu -20 292 15 1148 236 25 55 chr3 11792875 11793065 -215731513 - L1ME2 LINE L1 -175 6784 6609 2085 239 23 18 chr3 11793366 11793969 -215730609 - L1ME2 LINE L1 -1305 5636 5031 2991 164 91 112 chr3 11793973 11795077 -215729501 - L1MB8 LINE L1 -6 6172 5089 943 249 72 0 chr3 11795079 11795344 -215729234 - L1ME2 LINE L1 -1904 5037 4754 6074 160 29 20 chr3 11795360 11796982 -215727596 - L1MC1 LINE L1 0 6333 4697 875 9 37 0 chr3 11797238 11797346 -215727232 + L1P LINE L1 5212 5323 -823 237 125 42 0 chr3 11797366 11797414 -215727164 - L1ME2 LINE L1 -2201 4740 4691 952 183 65 5 chr3 11797414 11797600 -215726978 - MER20 DNA MER1_type -22 197 1 2488 206 62 9 chr3 11797621 11798151 -215726427 + MLT1F1 LTR MaLR 10 567 0 400 207 0 58 chr3 11798152 11798239 -215726339 - L1ME2 LINE L1 -2290 4651 4570 402 21 0 0 chr3 11798256 11798303 -215726275 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2328 272 58 51 chr3 11798309 11798408 -215726170 - L1ME2 LINE L1 -4153 2969 2872 315 0 0 0 chr3 11798408 11798443 -215726135 + (TG)n Simple_repeat Simple_repeat 2 36 0 2328 272 58 51 chr3 11798443 11799943 -215724635 - L1ME2 LINE L1 -4250 2872 1128 720 265 124 8 chr3 11799976 11800210 -215724368 - MER21B LTR ERV1 -586 277 17 634 326 16 22 chr3 11800369 11800685 -215723893 - L1ME2 LINE L1 -6015 408 95 270 0 0 0 chr3 11800721 11800751 -215723827 + (CA)n Simple_repeat Simple_repeat 1 30 0 2338 74 10 7 chr3 11800849 11801146 -215723432 - AluY SINE Alu -13 298 1 405 0 0 0 chr3 11801352 11801397 -215723181 + (CA)n Simple_repeat Simple_repeat 1 45 0 265 289 111 22 chr3 11801402 11801537 -215723041 - MER117 DNA MER1_type -50 147 1 607 193 36 153 chr3 11802050 11802299 -215722279 - L1MC5 LINE L1 -814 7147 6928 2252 110 3 0 chr3 11802349 11802648 -215721930 + AluSg SINE Alu 1 300 -10 389 316 24 52 chr3 11802746 11802958 -215721620 - MIR SINE MIR 0 262 57 3467 109 17 49 chr3 11803356 11803751 -215720827 - L1PB1 LINE L1 0 6151 5780 480 77 0 0 chr3 11803751 11803816 -215720762 + (TA)n Simple_repeat Simple_repeat 2 66 0 3467 109 17 49 chr3 11803816 11804015 -215720563 - L1PB1 LINE L1 -371 5780 5576 443 266 199 23 chr3 11804191 11804533 -215720045 + L2 LINE L2 1301 1702 -1612 894 284 129 41 chr3 11804546 11805236 -215719342 + L2 LINE L2 1971 2721 -593 293 270 116 7 chr3 11805334 11805500 -215719078 + MLT1G LTR MaLR 322 545 -45 395 318 177 23 chr3 11805621 11806011 -215718567 + L2 LINE L2 2844 3293 -20 478 272 101 6 chr3 11806075 11806233 -215718345 - MER5A DNA MER1_type -8 181 9 2319 82 16 7 chr3 11806429 11806733 -215717845 - AluY SINE Alu -4 307 1 184 306 14 0 chr3 11807480 11807552 -215717026 - MIR SINE MIR -78 130 58 199 261 42 31 chr3 11808229 11808383 -215716195 - MIR SINE MIR -10 252 56 227 111 0 22 chr3 11808550 11808595 -215715983 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 2245 110 3 0 chr3 11808764 11808778 -215715800 - AluSx SINE Alu -11 301 289 198 0 0 0 chr3 11808778 11808800 -215715778 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 2245 110 3 0 chr3 11808800 11809085 -215715493 - AluSx SINE Alu -23 289 1 187 271 129 0 chr3 11809437 11809522 -215715056 + L2 LINE L2 2563 2658 -656 458 207 18 9 chr3 11809905 11810016 -215714562 + Charlie1a DNA MER1_type 45 156 -1299 13225 181 48 22 chr3 11810019 11810175 -215714403 + L1MB7 LINE L1 2197 2348 -3836 1440 221 14 0 chr3 11810175 11810460 -215714118 - AluJo SINE Alu -23 289 1 13225 181 48 22 chr3 11810460 11812034 -215712544 + L1MB7 LINE L1 2348 3881 -2303 275 71 24 0 chr3 11812034 11812076 -215712502 + (CA)n Simple_repeat Simple_repeat 2 44 0 13225 181 48 22 chr3 11812076 11814115 -215710463 + L1MB7 LINE L1 3881 6064 -120 1408 170 111 23 chr3 11814170 11814476 -215710102 - MLT1D LTR MaLR -46 459 127 467 93 0 53 chr3 11814477 11814552 -215710026 + AluSq/x SINE Alu 63 133 -180 1128 95 0 44 chr3 11814556 11814714 -215709864 - AluSq/x SINE Alu -162 151 1 436 303 142 0 chr3 11814714 11814876 -215709702 + MIR SINE MIR 63 247 -15 276 259 0 56 chr3 11814907 11815015 -215709563 + MIR SINE MIR 110 211 -51 188 288 45 30 chr3 11816103 11816169 -215708409 - L2 LINE L2 -39 3233 3167 215 301 161 42 chr3 11816388 11816624 -215707954 - L2 LINE L2 -496 2818 2555 295 192 151 0 chr3 11816705 11816778 -215707800 + MER45 DNA AcHobo 1 84 -956 6067 178 79 12 chr3 11816814 11817772 -215706806 - L1MA9 LINE L1 -10 6302 5409 333 0 0 0 chr3 11817772 11817809 -215706769 + (TG)n Simple_repeat Simple_repeat 2 38 0 6067 178 79 12 chr3 11817809 11818892 -215705686 - L1MA9 LINE L1 -903 5409 4127 308 218 81 35 chr3 11818908 11818995 -215705583 + L1MC4 LINE L1 6616 6706 -1336 192 185 19 37 chr3 11818997 11819105 -215705473 + (TA)n Simple_repeat Simple_repeat 1 106 0 2299 228 30 33 chr3 11819114 11819755 -215704823 - L1MA9 LINE L1 -3129 3017 2379 186 256 0 23 chr3 11820182 11820225 -215704353 - MIR SINE MIR -1 261 220 932 228 70 180 chr3 11820271 11820926 -215703652 + MLT1G1 LTR MaLR 11 593 -2 227 283 72 47 chr3 11820952 11821069 -215703509 - MIR SINE MIR -82 126 35 245 245 304 0 chr3 11821311 11821413 -215703165 + MIR3 SINE MIR 11 143 -65 296 260 24 81 chr3 11822729 11822852 -215701726 - L1MC/D LINE L1 -2171 5637 5522 236 261 29 0 chr3 11822975 11823044 -215701534 - L2 LINE L2 0 3313 3243 518 198 50 0 chr3 11823100 11823221 -215701357 - MIR3 SINE MIR 0 208 82 2229 104 0 3 chr3 11824060 11824348 -215700230 - AluSc SINE Alu -16 293 7 430 222 19 9 chr3 11824563 11824671 -215699907 + MIR SINE MIR 74 182 -80 190 121 30 0 chr3 11825346 11825379 -215699199 - L2 LINE L2 -252 3061 3028 3647 86 8 6 chr3 11826530 11827031 -215697547 + L1P4 LINE L1 5290 5791 -377 600 297 33 18 chr3 11827051 11827088 -215697490 + L1MA5 LINE L1 5751 5786 -514 840 85 23 11 chr3 11827088 11827265 -215697313 + (TA)n Simple_repeat Simple_repeat 2 180 0 600 297 33 18 chr3 11827265 11827503 -215697075 + L1MA5 LINE L1 5786 6030 -270 * 2749 71 33 0 chr3 11827267 11827632 -215696946 + L1PA10 LINE L1 5792 6168 0 2032 167 51 20 chr3 11827694 11828084 -215696494 + MLT2D LTR ERVL 1 402 -12 914 210 122 44 chr3 11828530 11828849 -215695729 + MER2 DNA MER2_type 1 344 0 623 75 0 0 chr3 11829096 11829176 -215695402 + MADE1 DNA Mariner 1 80 0 444 208 42 33 chr3 11829698 11829818 -215694760 - MIR3 SINE MIR -2 206 86 341 309 42 24 chr3 11833230 11833398 -215691180 + MIR SINE MIR 56 226 -36 283 197 13 0 chr3 11834548 11834624 -215689954 - MIR SINE MIR -69 139 63 185 320 39 39 chr3 11834828 11834931 -215689647 + MIR SINE MIR 44 146 -62 192 97 0 0 chr3 11836472 11836503 -215688075 + (TAA)n Simple_repeat Simple_repeat 2 32 0 304 279 29 10 chr3 11836993 11837097 -215687481 + MIR SINE MIR 85 190 -72 194 294 0 0 chr3 11837236 11837287 -215687291 + L2 LINE L2 3151 3201 -71 443 193 55 9 chr3 11838729 11838838 -215685740 - MIR SINE MIR -122 140 27 1017 200 4 74 chr3 11839211 11839441 -215685137 - MER20 DNA MER1_type -5 214 1 407 256 40 8 chr3 11839665 11839790 -215684788 + MER91C DNA MER1_type 9 137 -3 300 207 9 99 chr3 11841300 11841411 -215683167 - MER5A DNA MER1_type -80 109 9 24 32 0 0 chr3 11843055 11843086 -215681492 + AT_rich Low_complexity Low_complexity 1 31 0 222 258 124 77 chr3 11843160 11843341 -215681237 - MIR SINE MIR -61 147 1 320 267 19 16 chr3 11843513 11843714 -215680864 - LTR16A LTR ERVL -167 283 51 395 208 0 0 chr3 11843975 11844047 -215680531 + MIR SINE MIR 75 146 -62 192 312 56 69 chr3 11844288 11844519 -215680059 + L2 LINE L2 2721 2948 -366 652 169 214 0 chr3 11845543 11845697 -215678881 - MER5A DNA MER1_type -1 188 2 282 348 67 6 chr3 11846332 11846510 -215678068 + L2 LINE L2 2904 3092 -180 366 250 207 36 chr3 11846576 11846716 -215677862 - MIR SINE MIR -1 261 98 5357 177 39 3 chr3 11848009 11848105 -215676473 + L1MB7 LINE L1 4148 4239 -1945 267 31 0 0 chr3 11848105 11848137 -215676441 + (CA)n Simple_repeat Simple_repeat 1 32 0 5357 177 39 3 chr3 11848137 11849947 -215674631 + L1MB7 LINE L1 4239 6130 -54 181 292 69 14 chr3 11850960 11851032 -215673546 + MER5A DNA MER1_type 9 84 -105 306 311 95 20 chr3 11852106 11852254 -215672324 + MER5A DNA MER1_type 2 160 -29 294 293 143 34 chr3 11852682 11852829 -215671749 + MIR3 SINE MIR 1 163 -45 181 345 0 83 chr3 11853114 11853198 -215671380 - MIR3 SINE MIR -129 79 3 438 189 148 8 chr3 11853324 11853446 -215671132 + MER103 DNA DNA 9 147 -19 180 0 0 0 chr3 11853551 11853571 -215671007 + (TG)n Simple_repeat Simple_repeat 1 20 0 529 250 12 50 chr3 11854916 11854970 -215669608 - MER5A DNA MER1_type -19 170 116 2148 175 61 19 chr3 11854970 11855381 -215669197 - MSTA LTR MaLR 0 428 1 529 250 12 50 chr3 11855381 11855486 -215669092 - MER5A DNA MER1_type -73 116 17 226 196 43 0 chr3 11855519 11855565 -215669013 - MIR SINE MIR -97 111 64 305 307 53 9 chr3 11855731 11855845 -215668733 + MIR SINE MIR 73 191 -71 1537 84 0 80 chr3 11855870 11856095 -215668483 + AluY SINE Alu 96 302 -9 2729 118 47 2 chr3 11857126 11857533 -215667045 + MSTB LTR MaLR 1 425 -1 479 202 9 0 chr3 11857536 11857650 -215666928 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 204 125 0 0 chr3 11857978 11858010 -215666568 + (TTC)n Simple_repeat Simple_repeat 2 33 0 203 360 12 12 chr3 11858730 11858816 -215665762 + MIR SINE MIR 52 137 -71 874 175 186 15 chr3 11858950 11859224 -215665354 + MER5C DNA MER1_type 4 324 0 530 227 57 17 chr3 11860023 11860223 -215664355 + MLT1F LTR MaLR 18 234 -321 750 210 81 56 chr3 11860360 11860629 -215663949 + MLT1F LTR MaLR 294 542 0 2147 121 0 23 chr3 11860734 11861040 -215663538 - AluSq SINE Alu -14 299 1 257 284 0 15 chr3 11861085 11861152 -215663426 + MER5A DNA MER1_type 87 152 -37 259 189 19 0 chr3 11861550 11861603 -215662975 + MER117 DNA MER1_type 115 168 -29 586 43 60 9 chr3 11862281 11862397 -215662181 + GA-rich Low_complexity Low_complexity 2 123 0 255 323 21 0 chr3 11862608 11862704 -215661874 + L2 LINE L2 3172 3269 -3 355 300 25 33 chr3 11863006 11863126 -215661452 - MIR3 SINE MIR -83 125 7 232 287 1 22 chr3 11863209 11863289 -215661289 + CT-rich Low_complexity Low_complexity 1 60 0 203 279 0 16 chr3 11863976 11864037 -215660541 - MIR SINE MIR -25 237 178 241 330 71 4 chr3 11864105 11864238 -215660340 - MIR SINE MIR -63 145 16 502 238 38 31 chr3 11864454 11864614 -215659964 - L2 LINE L2 -174 3098 2938 357 188 208 0 chr3 11864757 11864853 -215659725 + MER3 DNA MER1_type 53 168 -41 1476 203 51 8 chr3 11864854 11865224 -215659354 + MER3 DNA MER1_type 2239 2624 0 223 308 44 11 chr3 11865242 11865333 -215659245 - MER5A DNA MER1_type -89 100 7 1820 152 28 0 chr3 11865358 11865648 -215658930 + AluJb SINE Alu 1 298 -14 455 186 41 0 chr3 11866914 11867011 -215657567 + MIR SINE MIR 50 150 -58 229 276 56 140 chr3 11867540 11867790 -215656788 - L2 LINE L2 -52 3220 2992 247 342 60 48 chr3 11867867 11868136 -215656442 - L2 LINE L2 -432 2882 2611 417 294 83 73 chr3 11868144 11868471 -215656107 - MLT1J LTR MaLR -26 485 156 929 251 147 15 chr3 11868934 11869324 -215655254 + MLT1G3 LTR MaLR 75 530 0 238 247 233 14 chr3 11870398 11870471 -215654107 - MIR3 SINE MIR -9 199 111 215 288 61 0 chr3 11870511 11870577 -215654001 + MIR SINE MIR 76 145 -63 750 281 139 29 chr3 11870627 11870972 -215653606 + L3 LINE CR1 958 1340 -237 194 400 67 0 chr3 11871056 11871146 -215653432 + L3 LINE CR1 1371 1466 -111 815 174 5 102 chr3 11871361 11871557 -215653021 - MER58A DNA MER1_type -44 180 4 300 301 140 0 chr3 11872565 11872701 -215651877 - L2 LINE L2 -9 3263 3109 1346 178 157 78 chr3 11873047 11873263 -215651315 + MLT1C LTR MaLR 1 199 -268 405 39 0 0 chr3 11873263 11873314 -215651264 + (CA)n Simple_repeat Simple_repeat 2 52 0 1346 178 157 78 chr3 11873314 11873530 -215651048 + MLT1C LTR MaLR 199 467 0 991 178 213 0 chr3 11873555 11873785 -215650793 - MLT1D LTR MaLR 0 505 227 275 239 294 9 chr3 11874213 11874322 -215650256 + MIR SINE MIR 18 157 -105 2475 83 0 22 chr3 11874512 11874825 -215649753 + AluSx SINE Alu 1 306 -6 577 207 82 15 chr3 11874990 11875125 -215649453 + MER5B DNA MER1_type 35 178 0 1783 158 0 73 chr3 11876137 11876454 -215648124 - AluJb SINE Alu -18 294 1 272 320 0 0 chr3 11876971 11877046 -215647532 + L2 LINE L2 3239 3313 0 601 231 77 24 chr3 11877569 11877738 -215646840 + MIR SINE MIR 49 226 -36 2183 121 81 14 chr3 11877763 11878134 -215646444 - MSTA LTR MaLR -2 426 31 278 67 156 0 chr3 11878179 11878224 -215646354 - MSTA LTR MaLR -374 54 3 198 91 0 0 chr3 11878240 11878273 -215646305 + (T)n Simple_repeat Simple_repeat 1 33 0 40890 37 23 1 chr3 11878273 11884295 -215640283 - L1PA3 LINE L1 0 6155 1 1406 195 23 36 chr3 11884297 11884600 -215639978 - AluJo SINE Alu -13 299 1 236 324 0 0 chr3 11884779 11884850 -215639728 - MIR SINE MIR -138 124 54 331 281 42 0 chr3 11885479 11885575 -215639003 - MIR SINE MIR -99 163 64 967 249 127 44 chr3 11886001 11886451 -215638127 + LTR16C LTR ERVL 3 489 -2 933 195 123 0 chr3 11886660 11886855 -215637723 + MER20 DNA MER1_type 1 219 0 234 211 84 42 chr3 11887693 11887764 -215636814 - MER5A DNA MER1_type -76 113 40 1261 215 113 26 chr3 11888242 11888586 -215635992 - MLT1A2 LTR MaLR 0 374 1 994 251 39 4 chr3 11889047 11889278 -215635300 - MIR SINE MIR -3 259 21 304 302 65 14 chr3 11889299 11889438 -215635140 - MIR SINE MIR -97 165 20 216 260 0 0 chr3 11890084 11890134 -215634444 + L2 LINE L2 3261 3310 -3 887 199 35 0 chr3 11890840 11891011 -215633567 + MER5A DNA MER1_type 7 183 -6 290 320 45 22 chr3 11891143 11891321 -215633257 + MIR SINE MIR 21 202 -60 210 289 0 19 chr3 11891719 11891771 -215632807 + G-rich Low_complexity Low_complexity 5 55 0 321 298 114 44 chr3 11891939 11892483 -215632095 - L1ME4a LINE L1 -236 5885 5303 218 309 85 32 chr3 11893785 11893879 -215630699 + MIR SINE MIR 36 134 -74 224 282 27 64 chr3 11894368 11894478 -215630100 - MIR SINE MIR -66 196 91 214 367 25 17 chr3 11894683 11894803 -215629775 + MIR3 SINE MIR 4 124 -84 317 287 221 11 chr3 11895715 11895896 -215628682 + L1ME4a LINE L1 5769 5987 -134 462 271 188 1 chr3 11895973 11896207 -215628371 - Charlie8 DNA MER1_type -2246 171 1 360 353 29 0 chr3 11896207 11896343 -215628235 + L1ME4a LINE L1 5982 6121 0 246 236 37 143 chr3 11896450 11896611 -215627967 + MIR SINE MIR 109 252 -10 210 260 13 39 chr3 11896667 11896744 -215627834 + MIR SINE MIR 20 94 -168 271 346 13 0 chr3 11897439 11897517 -215627061 - MIR SINE MIR -30 232 154 595 262 64 0 chr3 11897612 11897784 -215626794 + LTR16C LTR ERVL 273 455 -36 466 198 129 106 chr3 11898097 11898314 -215626264 + SATR1 Satellite Satellite 143 364 -106 513 268 298 7 chr3 11898388 11898660 -215625918 + SATR1 Satellite Satellite 25 375 -95 1046 219 258 11 chr3 11898689 11899814 -215624764 + SATR1 Satellite Satellite 1 1402 -95 1195 220 228 25 chr3 11899851 11902073 -215622505 + SATR1 Satellite Satellite 1 2670 -4 740 240 318 3 chr3 11902104 11902450 -215622128 + SATR1 Satellite Satellite 12 466 -4 933 223 256 48 chr3 11902479 11903147 -215621431 + SATR1 Satellite Satellite 1 807 -1 1117 233 209 44 chr3 11903171 11904087 -215620491 + SATR1 Satellite Satellite 1 1067 -1 261 214 48 71 chr3 11904115 11904199 -215620379 + SATR1 Satellite Satellite 342 423 -47 247 266 174 60 chr3 11904216 11904618 -215619960 - SATR1 Satellite Satellite -10 460 13 * 1229 197 264 15 chr3 11904264 11904787 -215619791 + SATR1 Satellite Satellite 1 652 -1 957 227 330 9 chr3 11904872 11905541 -215619037 + SATR1 Satellite Satellite 1 883 -3 977 213 215 82 chr3 11905580 11906383 -215618195 + SATR1 Satellite Satellite 1 910 -8 3011 232 25 44 chr3 11906745 11906995 -215617583 - L1MB3 LINE L1 -30 6153 5900 1937 145 0 0 chr3 11906995 11907299 -215617279 - AluSx SINE Alu -8 304 1 3011 232 25 44 chr3 11907299 11907404 -215617174 - L1MB3 LINE L1 -283 5900 5795 192 111 0 0 chr3 11907404 11907440 -215617138 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1778 139 0 4 chr3 11907446 11907720 -215616858 - AluSx SINE Alu -33 279 7 3011 232 25 44 chr3 11907720 11908717 -215615861 - L1MB3 LINE L1 -393 5790 4818 1996 120 3 3 chr3 11908755 11909063 -215615515 + AluSp SINE Alu 1 308 -5 1378 202 3 82 chr3 11909143 11909350 -215615228 - L1MA4 LINE L1 -170 6130 5967 1624 167 0 4 chr3 11909350 11909631 -215614947 - AluSx SINE Alu -32 280 1 1378 202 3 82 chr3 11909631 11909814 -215614764 - L1MA4 LINE L1 -333 5967 5771 283 210 133 63 chr3 11909856 11909999 -215614579 + HsTC2 DNA Tc2 1633 1785 -113 1672 127 6 83 chr3 11910004 11910343 -215614235 + AluSp SINE Alu 1 313 0 180 0 0 0 chr3 11910517 11910537 -215614041 + (A)n Simple_repeat Simple_repeat 1 20 0 389 228 97 9 chr3 11910537 11910651 -215613927 + MER5B DNA MER1_type 50 173 -5 771 227 40 0 chr3 11910755 11910953 -215613625 - MER6B DNA MER2_type 0 210 5 1410 104 23 14 chr3 11912847 11913067 -215611511 + AluSq SINE Alu 1 222 -91 1007 197 289 22 chr3 11913071 11913529 -215611049 + SATR1 Satellite Satellite 1 580 -1 1352 176 239 24 chr3 11913552 11913932 -215610646 + SATR1 Satellite Satellite 7 468 -2 547 262 169 62 chr3 11913946 11914236 -215610342 + SATR1 Satellite Satellite 148 468 -2 1902 175 96 75 chr3 11914273 11914915 -215609663 + SATR1 Satellite Satellite 1 655 -1 2385 183 115 10 chr3 11914948 11916560 -215608018 + SATR1 Satellite Satellite 1 1781 -27 13787 94 12 19 chr3 11916560 11918497 -215606081 - HERVE LTR ERV1 -2641 5172 3249 1418 229 98 53 chr3 11919124 11920018 -215604560 + SATR1 Satellite Satellite 1 934 -19 4392 92 3 8 chr3 11920082 11920683 -215603895 - HERVE LTR ERV1 -3967 3846 3249 1462 229 112 39 chr3 11920747 11921630 -215602948 + SATR1 Satellite Satellite 1 947 -112 4521 79 2 13 chr3 11921701 11922306 -215602272 - HERVE LTR ERV1 -3967 3846 3249 1497 207 104 48 chr3 11922755 11923414 -215601164 + SATR1 Satellite Satellite 1 696 -131 19349 102 13 9 chr3 11923425 11926154 -215598424 - HERVE LTR ERV1 -3967 3846 1108 23 0 0 0 chr3 11926387 11926410 -215598168 + AT_rich Low_complexity Low_complexity 1 23 0 2254 231 178 47 chr3 11926501 11929261 -215595317 + SATR1 Satellite Satellite 1 3120 -125 1678 122 0 0 chr3 11929261 11929499 -215595079 - HERVE LTR ERV1 -6589 1224 987 2585 225 76 25 chr3 11929502 11930308 -215594270 - L1MC4a LINE L1 -118 7690 6844 370 202 10 19 chr3 11930474 11930578 -215594000 + CT-rich Low_complexity Low_complexity 4 106 0 29 47 0 0 chr3 11931439 11931482 -215593096 + AT_rich Low_complexity Low_complexity 1 43 0 237 152 0 22 chr3 11931482 11931528 -215593050 - Alu SINE Alu -13 307 263 1691 181 131 0 chr3 11931613 11931950 -215592628 + MER21B LTR ERV1 1 381 -482 235 167 48 0 chr3 11931950 11931992 -215592586 + MER41B LTR ERV1 1 44 -591 2656 170 18 13 chr3 11932019 11932520 -215592058 + MER41B LTR ERV1 100 466 -12 2290 166 19 26 chr3 11932549 11932966 -215591612 + MER21A LTR ERV1 515 928 -3 235 258 137 16 chr3 11932991 11933115 -215591463 + LTR16A1 LTR ERVL 319 457 0 410 276 14 35 chr3 11934185 11934330 -215590248 + CT-rich Low_complexity Low_complexity 2 143 0 310 326 56 14 chr3 11934785 11934929 -215589649 + MIR3 SINE MIR 3 152 -56 350 312 81 41 chr3 11936198 11936419 -215588159 + MIR SINE MIR 2 231 -31 308 287 11 0 chr3 11936977 11937064 -215587514 - MIR SINE MIR -48 214 127 1935 190 72 27 chr3 11937229 11937379 -215587199 + LTR40b LTR ERVL 1 143 -319 1918 171 48 14 chr3 11937379 11937730 -215586848 - THE1B LTR MaLR 0 364 2 1935 190 72 27 chr3 11937730 11938021 -215586557 + LTR40b LTR ERVL 143 462 0 191 277 34 74 chr3 11938185 11938333 -215586245 - L2 LINE L2 -237 3035 2894 464 294 134 24 chr3 11938540 11938598 -215585980 + LTR33 LTR ERVL 106 156 -365 3490 105 85 11 chr3 11938598 11939152 -215585426 - LTR61 LTR ERV1 0 595 1 464 294 134 24 chr3 11939152 11939385 -215585193 + LTR33 LTR ERVL 156 429 -92 216 368 47 0 chr3 11939542 11939648 -215584930 + L2 LINE L2 2954 3064 -208 187 133 44 0 chr3 11939786 11939831 -215584747 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 218 241 55 76 chr3 11940009 11940154 -215584424 - L2 LINE L2 -165 3107 2966 703 283 64 21 chr3 11940387 11940620 -215583958 + MIR SINE MIR 20 262 0 180 0 0 0 chr3 11940647 11940667 -215583911 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 469 271 119 19 chr3 11941277 11941487 -215583091 - MIR SINE MIR -12 250 20 213 216 0 0 chr3 11941769 11941806 -215582772 + polypyrimidine Low_complexity Low_complexity 2 38 0 230 241 98 60 chr3 11941867 11942000 -215582578 + L2 LINE L2 2966 3103 -169 189 247 0 82 chr3 11942060 11942145 -215582433 + L2 LINE L2 3128 3205 -67 1871 137 0 17 chr3 11942337 11942658 -215581920 + AluSx SINE Alu 1 312 0 754 235 12 6 chr3 11942705 11942867 -215581711 + MIR SINE MIR 35 197 -65 241 278 134 0 chr3 11942891 11942988 -215581590 + L2 LINE L2 3156 3265 -7 198 143 0 0 chr3 11943379 11943414 -215581164 + (TC)n Simple_repeat Simple_repeat 2 36 0 511 269 96 40 chr3 11944969 11945218 -215579360 + L1MC4a LINE L1 5627 5889 -1919 1546 202 35 26 chr3 11945228 11945570 -215579008 + MLT1A2 LTR MaLR 30 374 0 668 241 28 77 chr3 11945570 11945856 -215578722 + L1ME3A LINE L1 5899 6170 0 230 227 15 45 chr3 11946306 11946372 -215578206 + L3 LINE CR1 1509 1572 -5 484 298 32 50 chr3 11946649 11946867 -215577711 - L2 LINE L2 -124 3148 2935 200 175 50 0 chr3 11948020 11948060 -215576518 + MIR SINE MIR 83 124 -84 449 272 72 8 chr3 11948090 11948215 -215576363 + MIR3 SINE MIR 43 175 -33 1386 281 132 36 chr3 11949122 11950215 -215574363 - L2 LINE L2 0 3313 2087 545 271 31 35 chr3 11950327 11950556 -215574022 - LTR16A LTR ERVL 0 450 223 544 259 96 18 chr3 11951281 11951447 -215573131 + MIR SINE MIR 28 206 -56 581 152 29 0 chr3 11951979 11952084 -215572494 - ERVL LTR ERVL -1937 3827 3720 202 281 47 31 chr3 11952332 11952396 -215572182 - L3 LINE CR1 -294 1283 1219 183 286 0 0 chr3 11952599 11952641 -215571937 - L2 LINE L2 -8 3305 3264 220 271 43 0 chr3 11954497 11954567 -215570011 + MIR SINE MIR 126 198 -64 610 290 0 7 chr3 11955566 11955711 -215568867 + MIR3 SINE MIR 2 145 -63 348 333 122 24 chr3 11956210 11956423 -215568155 + MIR SINE MIR 23 256 -6 436 303 236 12 chr3 11957012 11957266 -215567312 - L3 LINE CR1 -80 1497 1187 226 350 82 21 chr3 11958229 11958326 -215566252 - L2 LINE L2 -46 3226 3124 267 239 14 14 chr3 11958890 11958961 -215565617 + CT-rich Low_complexity Low_complexity 4 74 0 211 324 54 27 chr3 11959075 11959223 -215565355 - L2 LINE L2 -485 2829 2678 1087 188 43 4 chr3 11959306 11959540 -215565038 - L1MB3 LINE L1 -2 6181 5939 277 287 52 59 chr3 11960075 11960211 -215564367 + MIR3 SINE MIR 12 146 -62 322 256 0 12 chr3 11961506 11961588 -215562990 + MER58A DNA MER1_type 1 81 -26 315 0 0 0 chr3 11961696 11961731 -215562847 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 249 186 57 145 chr3 11961943 11962067 -215562511 + MIR SINE MIR 33 145 -117 417 209 0 11 chr3 11962298 11962389 -215562189 - Tigger5 DNA MER2_type 0 2323 2234 230 236 0 0 chr3 11962394 11962449 -215562129 - Tigger5 DNA MER2_type -2130 193 139 222 323 129 0 chr3 11971094 11971218 -215553360 + MIR SINE MIR 2 141 -121 511 227 8 59 chr3 11971241 11971360 -215553218 - L2 LINE L2 0 3313 3201 212 152 0 0 chr3 11971447 11971480 -215553098 - MER91B DNA MER1_type -127 63 31 234 296 0 26 chr3 11971487 11971602 -215552976 - L2 LINE L2 -119 3194 3083 * 262 221 78 39 chr3 11971599 11971676 -215552902 + MIR SINE MIR 169 248 -14 321 281 53 9 chr3 11971689 11971803 -215552775 - MIR SINE MIR -64 198 80 250 351 54 12 chr3 11972105 11972273 -215552305 - L2 LINE L2 -225 3047 2873 261 244 67 22 chr3 11973744 11973834 -215550744 - MER20B DNA MER1_type -604 179 86 357 371 84 6 chr3 11974608 11974775 -215549803 + L2 LINE L2 3078 3257 -15 2370 110 7 0 chr3 11974781 11975089 -215549489 + AluSg SINE Alu 1 310 0 1526 234 8 19 chr3 11975250 11975617 -215548961 - MLT1A2 LTR MaLR -11 363 1 357 233 123 0 chr3 11975800 11975873 -215548705 - MIR SINE MIR -158 104 23 540 270 45 50 chr3 11976758 11976958 -215547620 + MIR SINE MIR 14 212 -50 935 279 75 19 chr3 11977053 11977466 -215547112 + MLT1K LTR MaLR 39 474 -114 492 184 0 44 chr3 11977607 11977721 -215546857 - L1MB8 LINE L1 0 6178 6070 744 137 22 38 chr3 11977744 11977927 -215546651 + CT-rich Low_complexity Low_complexity 1 180 0 202 182 0 0 chr3 11977927 11977960 -215546618 + polypyrimidine Low_complexity Low_complexity 4 36 0 1511 203 47 40 chr3 11977960 11977973 -215546605 - L1MB5 LINE L1 -101 6073 6062 1824 160 13 26 chr3 11977973 11978280 -215546298 - AluJo SINE Alu -9 303 1 1511 203 47 40 chr3 11978280 11978691 -215545887 - L1MB5 LINE L1 -112 6062 5650 521 358 23 23 chr3 11979536 11979796 -215544782 + MIR SINE MIR 1 260 -2 434 90 45 0 chr3 11980309 11980376 -215544202 - MSTB LTR MaLR -5 427 358 564 175 132 9 chr3 11980376 11980490 -215544088 + FLAM_C SINE Alu 2 129 -14 1429 171 122 0 chr3 11980492 11980779 -215543799 - MSTB LTR MaLR -68 358 37 279 333 101 32 chr3 11980813 11981002 -215543576 - MIR SINE MIR -40 222 21 204 194 0 90 chr3 11981185 11981252 -215543326 - MIR SINE MIR -143 119 59 266 233 83 30 chr3 11981643 11981776 -215542802 + L1ME4a LINE L1 5910 6049 -72 * 969 180 29 57 chr3 11981773 11981852 -215542726 + L1MB2 LINE L1 5933 6013 -158 2538 74 0 3 chr3 11981852 11982164 -215542414 - AluY SINE Alu 0 311 1 969 180 29 57 chr3 11982164 11982329 -215542249 + L1MB2 LINE L1 6013 6170 -1 433 360 47 38 chr3 11982354 11982688 -215541890 + L2 LINE L2 2772 3110 -162 2963 110 17 5 chr3 11982745 11983163 -215541415 + MSTA LTR MaLR 5 427 -1 857 77 8 0 chr3 11983610 11983727 -215540851 + MER20 DNA MER1_type 30 147 -72 922 280 93 51 chr3 11983727 11984306 -215540272 - L2 LINE L2 -50 3263 2639 1268 158 38 0 chr3 11984306 11984515 -215540063 + MER20 DNA MER1_type 3 219 0 922 280 93 51 chr3 11984515 11984633 -215539945 - L2 LINE L2 -674 2639 2527 2176 133 0 0 chr3 11985459 11985753 -215538825 + AluSx SINE Alu 1 294 -18 252 331 88 0 chr3 11986334 11986482 -215538096 - MER103 DNA DNA -5 161 1 284 223 138 43 chr3 11986916 11987010 -215537568 - L2 LINE L2 -8 3305 3203 240 313 0 12 chr3 11987032 11987112 -215537466 + MIR3 SINE MIR 98 176 -32 389 319 40 12 chr3 11987416 11987582 -215536996 + MIR SINE MIR 35 204 -58 1628 169 27 113 chr3 11987985 11988159 -215536419 + MLT1A2 LTR MaLR 1 122 -252 1868 151 10 13 chr3 11988159 11988463 -215536115 + AluJb SINE Alu 3 305 -7 1628 169 27 113 chr3 11988463 11988695 -215535883 + MLT1A2 LTR MaLR 122 372 -2 2108 113 0 0 chr3 11988722 11989025 -215535553 + AluSx SINE Alu 7 309 0 2051 160 7 0 chr3 11989055 11989348 -215535230 - AluJo SINE Alu -17 295 1 266 300 110 52 chr3 11989385 11989717 -215534861 - L2 LINE L2 -42 3230 2874 2393 105 0 0 chr3 11989717 11990012 -215534566 + AluSx SINE Alu 2 296 -16 266 300 110 52 chr3 11990012 11990042 -215534536 - L2 LINE L2 -398 2874 2847 680 241 113 55 chr3 11990154 11990428 -215534150 + Charlie8 DNA MER1_type 1 275 -2142 640 391 36 16 chr3 11990932 11991295 -215533283 + L3 LINE CR1 66 435 -1142 407 296 70 14 chr3 11991319 11991461 -215533117 + L3 LINE CR1 968 1117 -460 585 224 46 33 chr3 11991502 11991654 -215532924 + Charlie8 DNA MER1_type 123 276 -2141 551 220 58 94 chr3 11991885 11992005 -215532573 + L3 LINE CR1 1265 1375 -202 2132 143 0 0 chr3 11992005 11992305 -215532273 + AluSx SINE Alu 1 300 -12 551 220 58 94 chr3 11992305 11992407 -215532171 + L3 LINE CR1 1375 1479 -98 361 247 75 58 chr3 11992899 11993073 -215531505 + MIR SINE MIR 84 260 -2 26 0 0 0 chr3 11993505 11993531 -215531047 + AT_rich Low_complexity Low_complexity 1 26 0 233 262 0 8 chr3 11995642 11995764 -215528814 + (CA)n Simple_repeat Simple_repeat 1 121 0 687 306 43 25 chr3 11996497 11996821 -215527757 - MLT1K LTR MaLR -220 368 39 540 271 43 50 chr3 11996916 11997127 -215527451 - MIR SINE MIR -50 212 1 328 214 129 0 chr3 11998002 11998072 -215526506 + MIR SINE MIR 23 101 -161 1625 232 8 19 chr3 11998258 11998625 -215525953 + MLT1A2 LTR MaLR 1 363 -11 2321 114 7 0 chr3 11998786 11999094 -215525484 - AluSg SINE Alu 0 310 1 511 362 46 40 chr3 11999100 11999423 -215525155 - L2 LINE L2 -15 3257 2933 238 352 58 28 chr3 11999854 12000215 -215524363 + L2 LINE L2 2566 2937 -377 1507 149 6 94 chr3 12000372 12000700 -215523878 - AluJo SINE Alu -13 299 1 806 224 6 0 chr3 12000767 12000932 -215523646 + MER3 DNA MER1_type 7 125 -84 32527 102 9 67 chr3 12000940 12007482 -215517096 + L1PA7 LINE L1 1 6154 0 399 274 80 0 chr3 12007532 12007645 -215516933 + L2 LINE L2 3191 3312 -1 203 125 21 21 chr3 12007727 12007775 -215516803 + T-rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr3 12008010 12008030 -215516548 + (TCC)n Simple_repeat Simple_repeat 2 21 0 181 342 39 32 chr3 12008931 12009086 -215515492 - MIR SINE MIR -13 249 94 386 217 17 43 chr3 12009108 12009223 -215515355 + MLT1E LTR MaLR 283 394 -199 1009 174 73 108 chr3 12009223 12009646 -215514932 + MLT1A2 LTR MaLR 1 390 0 858 204 0 58 chr3 12009654 12009860 -215514718 + MLT1E LTR MaLR 400 593 0 326 227 59 59 chr3 12010095 12010214 -215514364 + MIR3 SINE MIR 5 123 -85 376 150 25 0 chr3 12010969 12011049 -215513529 + GA-rich Low_complexity Low_complexity 3 84 0 750 207 95 0 chr3 12011062 12011231 -215513347 - MER5A DNA MER1_type -4 185 1 1181 217 34 0 chr3 12011420 12011683 -215512895 + L1ME2 LINE L1 5893 6164 0 221 148 19 37 chr3 12011717 12011771 -215512807 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2021 133 3 3 chr3 12012156 12012457 -215512121 + AluSx SINE Alu 1 301 -11 452 279 97 20 chr3 12012457 12012775 -215511803 + LTR16A LTR ERVL 75 444 -6 3774 153 29 43 chr3 12013341 12014103 -215510475 - L1MB3 LINE L1 -2 6181 5431 1979 129 3 17 chr3 12014103 12014397 -215510181 - MER1B DNA MER1_type -4 335 46 2922 183 16 11 chr3 12014410 12015070 -215509508 - L1MB3 LINE L1 -736 5444 4779 332 349 39 0 chr3 12015144 12015273 -215509305 + L2 LINE L2 3125 3258 -14 333 259 0 23 chr3 12015453 12015566 -215509012 - LTR1B LTR ERV1 -37 983 675 1206 119 0 23 chr3 12015671 12015716 -215508862 - AluSq SINE Alu -136 177 133 2325 93 16 7 chr3 12015716 12016026 -215508552 - AluSq SINE Alu 0 313 1 1206 119 0 23 chr3 12016026 12016157 -215508421 - AluSq SINE Alu -180 133 5 25 0 0 0 chr3 12016220 12016245 -215508333 + AT_rich Low_complexity Low_complexity 1 25 0 1469 160 95 0 chr3 12016253 12016516 -215508062 + AluJb SINE Alu 1 288 -24 194 305 62 23 chr3 12017623 12017751 -215506827 - L2 LINE L2 -1293 2021 1889 2249 121 0 0 chr3 12017822 12018129 -215506449 - AluSx SINE Alu -5 307 1 244 164 36 0 chr3 12019074 12019129 -215505449 + G-rich Low_complexity Low_complexity 1 57 0 239 85 17 51 chr3 12019277 12019336 -215505242 + (TTC)n Simple_repeat Simple_repeat 1 57 0 770 196 0 0 chr3 12019355 12019488 -215505090 - FLAM_C SINE Alu 0 133 1 1023 236 115 55 chr3 12019610 12019754 -215504824 - L2 LINE L2 0 3313 3179 2142 109 7 0 chr3 12019754 12020039 -215504539 - AluSx SINE Alu -15 297 11 1023 236 115 55 chr3 12020039 12020060 -215504518 - L2 LINE L2 -134 3179 3161 2000 119 48 14 chr3 12020060 12020355 -215504223 - AluSx SINE Alu -7 305 1 1023 236 115 55 chr3 12020355 12020740 -215503838 - L2 LINE L2 -152 3161 2707 1831 169 0 22 chr3 12020740 12021059 -215503519 - AluJo SINE Alu 0 312 1 1023 236 115 55 chr3 12021059 12021106 -215503472 - L2 LINE L2 -606 2707 2664 2290 90 0 13 chr3 12021305 12021638 -215502940 + AluSx SINE Alu 1 312 0 1599 231 12 6 chr3 12022000 12022338 -215502240 + MER58B DNA MER1_type 1 340 -1 2308 112 0 0 chr3 12022578 12022874 -215501704 - AluSx SINE Alu -16 296 1 513 306 92 54 chr3 12022881 12023437 -215501141 - MLT1L LTR MaLR 0 615 39 302 324 29 0 chr3 12023589 12023694 -215500884 + MIR SINE MIR 42 149 -59 234 240 0 0 chr3 12023802 12023852 -215500726 + L2 LINE L2 3264 3313 0 1820 159 14 0 chr3 12023888 12024183 -215500395 - AluJb SINE Alu -13 299 1 313 235 79 107 chr3 12024441 12024848 -215499730 - MLT1H LTR MaLR -14 535 11 308 286 38 23 chr3 12025403 12025570 -215499008 - HAL1b LINE L1 -2 6119 1222 2287 108 0 0 chr3 12025601 12025889 -215498689 - AluSx SINE Alu -24 288 1 228 235 86 0 chr3 12025910 12025991 -215498587 - L1ME LINE L1 -365 5797 5710 702 174 0 0 chr3 12026490 12026599 -215497979 + FLAM_C SINE Alu 2 110 -33 222 274 47 105 chr3 12026679 12026869 -215497709 + MIR SINE MIR 76 254 -8 1218 181 185 8 chr3 12027792 12028051 -215496527 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12028307 12028329 -215496249 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12028331 12028637 -215495941 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12029495 12029577 -215495001 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12029577 12029880 -215494698 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12029880 12029973 -215494605 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12030290 12030390 -215494188 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12030398 12030550 -215494028 - MIR SINE MIR -50 212 50 285 266 64 37 chr3 12031795 12031904 -215492674 - MIR3 SINE MIR -92 116 5 2000 132 0 4 chr3 12032143 12032424 -215492154 + AluJb SINE Alu 18 297 -15 7455 50 0 3 chr3 12032650 12033990 -215490588 + L1PA6 LINE L1 4820 6154 0 191 0 0 94 chr3 12034004 12034036 -215490542 + (A)n Simple_repeat Simple_repeat 1 29 0 715 273 32 10 chr3 12034085 12034364 -215490214 + LTR16B LTR ERVL 88 462 -2 224 271 24 0 chr3 12034405 12034490 -215490088 + MIR SINE MIR 161 247 -15 242 297 68 8 chr3 12035132 12035250 -215489328 - L2 LINE L2 -5 3267 3143 235 271 82 0 chr3 12035548 12035633 -215488945 + MIR SINE MIR 118 209 -53 382 260 20 0 chr3 12035722 12035822 -215488756 + MIR SINE MIR 156 257 -5 291 264 0 0 chr3 12035969 12036041 -215488537 - MER34 LTR ERV1 -469 73 2 * 1492 159 172 99 chr3 12036041 12036406 -215488172 - MER21A LTR ERV1 -530 401 9 917 148 10 91 chr3 12036406 12036557 -215488021 - L1MB7 LINE L1 -354 5830 5699 1707 188 3 0 chr3 12036557 12036849 -215487729 - AluJo SINE Alu -17 295 3 917 148 10 91 chr3 12036849 12036906 -215487672 - L1MB7 LINE L1 -485 5699 5639 484 198 0 0 chr3 12036909 12036990 -215487588 - Tigger5 DNA MER2_type 0 2323 2243 340 182 0 0 chr3 12037003 12037058 -215487520 - Tigger5 DNA MER2_type -2268 55 1 1185 169 59 72 chr3 12037059 12037130 -215487448 - L1MB7 LINE L1 -538 5636 5566 1997 161 14 30 chr3 12037130 12037491 -215487087 - THE1A LTR MaLR 0 355 1 1185 169 59 72 chr3 12037491 12037726 -215486852 - L1MB7 LINE L1 -608 5566 5327 1796 183 3 7 chr3 12037726 12038026 -215486552 - AluJb SINE Alu -13 299 1 1185 169 59 72 chr3 12038026 12038091 -215486487 - L1MB7 LINE L1 -847 5327 5263 4037 169 20 6 chr3 12038132 12038785 -215485793 + MER72 LTR ERV1 1 662 -60 2066 146 20 0 chr3 12038785 12039086 -215485492 - AluSx SINE Alu -5 307 1 2330 107 0 0 chr3 12039113 12039411 -215485167 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12039635 12039691 -215484887 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12039699 12039780 -215484798 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2142 139 0 0 chr3 12039780 12040089 -215484489 + AluSg SINE Alu 1 309 -1 1371 168 71 27 chr3 12040089 12040344 -215484234 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 229 122 15 chr3 12040380 12040511 -215484067 - L1MC/D LINE L1 -309 5812 5668 235 231 31 31 chr3 12040751 12040816 -215483762 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12040943 12041055 -215483523 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12041085 12041197 -215483381 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12041204 12041497 -215483081 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12041497 12041730 -215482848 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12042395 12042604 -215481974 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12042629 12042901 -215481677 - AluSg SINE Alu -13 297 23 510 120 0 13 chr3 12043143 12043218 -215481360 + MER39B LTR ERV1 557 630 -23 2551 146 27 50 chr3 12043229 12043673 -215480905 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12043673 12043989 -215480589 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12043989 12044217 -215480361 + AluSg/x SINE Alu 75 302 -10 1263 200 20 84 chr3 12044217 12044255 -215480323 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12044358 12044452 -215480126 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12044549 12044635 -215479943 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12044638 12044801 -215479777 + L1MB5 LINE L1 5832 5966 -208 1742 142 67 0 chr3 12044841 12045109 -215479469 - AluJb SINE Alu -26 286 1 915 221 69 86 chr3 12045178 12045325 -215479253 - MER39 LTR ERV1 -19 688 540 513 0 0 0 chr3 12045325 12045382 -215479196 + (TG)n Simple_repeat Simple_repeat 2 58 0 1575 184 14 28 chr3 12045382 12045670 -215478908 - AluJo SINE Alu -28 284 1 915 221 69 86 chr3 12045670 12045711 -215478867 - MER39 LTR ERV1 -166 541 501 730 179 0 30 chr3 12045711 12045845 -215478733 - FLAM_A SINE Alu -2 131 2 915 221 69 86 chr3 12045845 12046188 -215478390 - MER39 LTR ERV1 -206 501 1 274 306 12 0 chr3 12046308 12046393 -215478185 - MER97b DNA MER1_type? -874 179 94 5472 147 41 50 chr3 12046567 12046643 -215477935 + Charlie1 DNA MER1_type 1 76 -2685 1910 171 3 10 chr3 12046643 12046948 -215477630 - AluJb SINE Alu -9 303 1 5472 147 41 50 chr3 12046948 12047412 -215477166 + Charlie1 DNA MER1_type 76 542 -2219 1628 183 78 46 chr3 12047412 12047822 -215476756 + LTR37A LTR ERV1 4 426 0 5472 147 41 50 chr3 12047822 12048255 -215476323 + Charlie1 DNA MER1_type 542 977 -1784 1992 120 3 19 chr3 12048255 12048563 -215476015 + AluSx SINE Alu 1 303 -9 5472 147 41 50 chr3 12048563 12048715 -215475863 + Charlie1 DNA MER1_type 977 1129 -1632 2262 103 30 0 chr3 12048715 12049015 -215475563 + AluSx SINE Alu 1 309 -3 5472 147 41 50 chr3 12049015 12049364 -215475214 + Charlie1 DNA MER1_type 1129 2757 -4 226 319 92 50 chr3 12049512 12049531 -215475047 - MIR SINE MIR 0 262 245 1931 135 25 0 chr3 12049531 12049829 -215474749 + AluSx SINE Alu 1 305 0 226 319 92 50 chr3 12049829 12049923 -215474655 - MIR SINE MIR -17 245 156 258 32 0 0 chr3 12049923 12049954 -215474624 + (TAA)n Simple_repeat Simple_repeat 3 33 0 226 319 92 50 chr3 12049954 12050076 -215474502 - MIR SINE MIR -106 156 15 190 304 72 14 chr3 12050099 12050168 -215474410 + MIR3 SINE MIR 82 154 -54 2355 89 0 3 chr3 12051684 12051987 -215472591 + AluSg SINE Alu 1 302 -8 455 250 93 63 chr3 12052162 12052371 -215472207 + MLT1K LTR MaLR 40 326 -262 734 148 139 0 chr3 12052389 12052504 -215472074 - AluSp SINE Alu -46 267 137 463 180 180 23 chr3 12052566 12052738 -215471840 + MLT1K LTR MaLR 378 576 -12 275 258 186 16 chr3 12052744 12052868 -215471710 - MIR3 SINE MIR -75 133 3 185 235 222 0 chr3 12053008 12053089 -215471489 - MIR SINE MIR -108 154 56 1945 180 11 22 chr3 12053336 12053691 -215470887 - MLT1A1 LTR MaLR 0 365 15 1042 177 0 6 chr3 12053691 12053866 -215470712 - AluSg/x SINE Alu -5 305 132 2241 109 0 26 chr3 12053866 12054179 -215470399 - AluSx SINE Alu -7 305 1 322 234 57 81 chr3 12054206 12054330 -215470248 + MIR SINE MIR 85 205 -57 718 239 56 0 chr3 12054372 12054552 -215470026 - MIR SINE MIR -59 203 14 2254 114 0 3 chr3 12054772 12055071 -215469507 + AluSg SINE Alu 1 298 -12 777 189 0 0 chr3 12055450 12055577 -215469001 - FLAM_C SINE Alu -5 128 2 2268 137 30 35 chr3 12055658 12056024 -215468554 - THE1B LTR MaLR 0 364 1 821 137 0 8 chr3 12057500 12057624 -215466954 + AluJo SINE Alu 12 134 -178 434 287 171 5 chr3 12057675 12057735 -215466843 + MIR SINE MIR 7 56 -206 1755 170 3 10 chr3 12057735 12058024 -215466554 + AluJo SINE Alu 1 287 -25 434 287 171 5 chr3 12058024 12058179 -215466399 + MIR SINE MIR 56 258 -4 919 181 0 0 chr3 12058252 12058401 -215466177 - AluJb SINE Alu -26 286 138 1012 217 58 4 chr3 12058444 12058702 -215465876 - L1ME3 LINE L1 -1 6161 5890 1054 79 0 0 chr3 12058847 12058974 -215465604 + 7SLRNA srpRNA srpRNA 75 201 -119 2198 104 13 7 chr3 12059381 12059679 -215464899 - AluSx SINE Alu -10 302 3 203 239 0 70 chr3 12060065 12060136 -215464442 + MIR SINE MIR 163 228 -34 1960 175 68 0 chr3 12060154 12060480 -215464098 - MER7A DNA MER2_type 0 346 1 230 222 143 0 chr3 12060576 12060639 -215463939 - L2 LINE L2 -1 3312 3241 628 286 38 5 chr3 12061325 12061510 -215463068 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12061728 12061748 -215462830 + (TG)n Simple_repeat Simple_repeat 2 21 0 1848 135 18 7 chr3 12061895 12062199 -215462379 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12063658 12063680 -215460898 + AT_rich Low_complexity Low_complexity 1 22 0 1757 157 11 0 chr3 12064228 12064514 -215460064 - AluJb SINE Alu -23 289 1 312 326 73 59 chr3 12064617 12064905 -215459673 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12065276 12065325 -215459253 + AT_rich Low_complexity Low_complexity 1 49 0 1639 183 7 10 chr3 12065457 12065752 -215458826 - AluJo SINE Alu -16 296 3 536 240 185 7 chr3 12065883 12066029 -215458549 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12066175 12066196 -215458382 + AT_rich Low_complexity Low_complexity 1 21 0 2602 57 0 13 chr3 12066282 12066597 -215457981 - AluY SINE Alu 0 311 1 1520 189 23 27 chr3 12067239 12067540 -215457038 - AluJo SINE Alu -12 300 1 2139 117 7 10 chr3 12068138 12068438 -215456140 - AluSx SINE Alu -13 299 1 2071 113 21 0 chr3 12069377 12069659 -215454919 + AluSq SINE Alu 1 288 -25 252 145 133 121 chr3 12071628 12071711 -215452867 + MLT1B LTR MaLR 1 84 -306 182 313 0 62 chr3 12071979 12072043 -215452535 + MIR SINE MIR 36 95 -113 399 184 61 41 chr3 12073053 12073151 -215451427 - Charlie1 DNA MER1_type -255 2506 2407 853 172 77 107 chr3 12073159 12073264 -215451314 - Charlie1 DNA MER1_type -613 2148 2041 1644 126 22 0 chr3 12073264 12073495 -215451083 + AluSx SINE Alu 1 236 -76 853 172 77 107 chr3 12073495 12073650 -215450928 - Charlie1 DNA MER1_type -720 2041 1896 1308 241 100 47 chr3 12073652 12074124 -215450454 - Charlie1 DNA MER1_type -977 1784 1228 1059 198 171 0 chr3 12074124 12074382 -215450196 - MER2 DNA MER2_type 0 345 44 2289 188 202 59 chr3 12074437 12074845 -215449733 - Charlie1 DNA MER1_type -1524 1237 889 1209 208 36 46 chr3 12074845 12075148 -215449430 + AluJo SINE Alu 1 300 -12 2289 188 202 59 chr3 12075148 12075772 -215448806 - Charlie1 DNA MER1_type -1872 889 57 180 278 103 52 chr3 12075999 12076096 -215448482 + L2 LINE L2 2538 2639 -675 249 253 76 13 chr3 12076098 12076177 -215448401 + MIR SINE MIR 62 145 -117 3494 118 135 38 chr3 12076206 12076587 -215447991 - Tigger1 DNA MER2_type 0 2418 2075 1945 133 43 7 chr3 12076587 12076888 -215447690 - AluSx SINE Alu 0 312 1 3494 118 135 38 chr3 12076888 12077164 -215447414 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12078419 12078461 -215446117 - MIR SINE MIR -6 256 217 1600 157 34 27 chr3 12078932 12079226 -215445352 + AluJb SINE Alu 1 296 -16 339 164 0 15 chr3 12079791 12079858 -215444720 - Charlie5 DNA MER1_type -2505 107 42 1153 90 131 95 chr3 12080390 12080612 -215443966 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12084596 12084632 -215439946 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12085734 12085763 -215438815 + AT_rich Low_complexity Low_complexity 1 29 0 280 331 61 25 chr3 12086358 12086521 -215438057 - MIR SINE MIR -91 171 3 837 172 16 123 chr3 12087301 12087545 -215437033 - MER20 DNA MER1_type 0 219 2 335 326 157 54 chr3 12087582 12087971 -215436607 - L2 LINE L2 -16 3256 2828 315 203 0 0 chr3 12087986 12088060 -215436518 + (ATG)n Simple_repeat Simple_repeat 1 74 0 697 257 34 0 chr3 12088061 12088236 -215436342 - MIR SINE MIR -8 254 74 2167 107 17 0 chr3 12088284 12088574 -215436004 - AluSx SINE Alu -17 295 1 446 226 196 98 chr3 12088611 12088812 -215435766 - MLT1H LTR MaLR 0 549 369 2249 110 3 3 chr3 12088812 12089121 -215435457 - AluSc SINE Alu 0 309 1 2325 114 0 0 chr3 12089126 12089432 -215435146 - AluSx SINE Alu -6 306 1 446 226 196 98 chr3 12089432 12089724 -215434854 - MLT1H LTR MaLR -183 366 1 480 305 106 4 chr3 12089926 12090057 -215434521 - MIR SINE MIR -2 260 144 2221 157 12 54 chr3 12090057 12090287 -215434291 - MLT1B LTR MaLR 0 390 183 2248 113 0 0 chr3 12090287 12090588 -215433990 - AluSx SINE Alu -11 301 1 2221 157 12 54 chr3 12090588 12090764 -215433814 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12090764 12090868 -215433710 - MIR SINE MIR -118 144 1 1624 157 0 0 chr3 12091080 12091322 -215433256 + AluJb SINE Alu 64 305 -7 870 273 66 12 chr3 12091379 12091621 -215432957 - MIR SINE MIR 0 262 8 4748 161 15 6 chr3 12091772 12092585 -215431993 + L1MB3 LINE L1 5364 6183 0 353 211 122 0 chr3 12092632 12092722 -215431856 - HAL1 LINE L1 -2390 117 17 450 0 0 0 chr3 12093460 12093510 -215431068 + (CA)n Simple_repeat Simple_repeat 2 51 0 215 31 31 0 chr3 12093644 12093676 -215430902 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6629 73 20 0 chr3 12093676 12094716 -215429862 - L1PA13 LINE L1 -12 6151 5143 270 160 0 0 chr3 12095149 12095199 -215429379 + T-rich Low_complexity Low_complexity 1 50 0 1072 181 51 0 chr3 12095862 12096039 -215428539 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 12096050 12096548 -215428030 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 12096564 12096606 -215427972 + (TG)n Simple_repeat Simple_repeat 1 42 0 382 274 30 85 chr3 12097194 12097358 -215427220 + MER112 DNA MER1_type 15 169 -91 348 274 15 99 chr3 12097422 12097623 -215426955 - MER5A DNA MER1_type -4 185 2 425 269 45 6 chr3 12097867 12098023 -215426555 + L1MEd LINE L1 2 163 -5956 2151 119 0 10 chr3 12098088 12098383 -215426195 - AluSx SINE Alu -20 292 1 800 280 121 74 chr3 12098428 12098995 -215425583 + L1MEd LINE L1 265 804 -5325 296 185 0 17 chr3 12098995 12099010 -215425568 + AluSg/x SINE Alu 129 133 -167 2022 138 0 7 chr3 12099010 12099308 -215425270 + AluSx SINE Alu 1 296 -16 800 280 121 74 chr3 12099061 12099333 -215425245 + L1MEd LINE L1 804 1062 -5067 1975 146 7 7 chr3 12099333 12099634 -215424944 + AluJo SINE Alu 1 301 -11 800 280 121 74 chr3 12099634 12099772 -215424806 + L1MEd LINE L1 1062 1192 -4937 2208 129 3 3 chr3 12099772 12100082 -215424496 + AluSq SINE Alu 1 310 -3 800 280 121 74 chr3 12100082 12100448 -215424130 + L1MEd LINE L1 1192 1433 -4696 1392 188 4 0 chr3 12100448 12100687 -215423891 - L1PB4 LINE L1 -7 6149 5910 800 280 121 74 chr3 12100687 12100894 -215423684 + L1MEd LINE L1 1433 1629 -4500 1912 152 0 3 chr3 12100921 12101223 -215423355 + AluJb SINE Alu 5 305 -7 2408 50 0 0 chr3 12101313 12101594 -215422984 + AluY SINE Alu 6 286 -25 664 171 267 0 chr3 12102715 12102861 -215421717 - MER5A DNA MER1_type -4 185 1 1783 181 3 16 chr3 12103638 12103953 -215420625 + AluJb SINE Alu 1 311 -1 445 261 43 9 chr3 12104157 12104272 -215420306 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 12105089 12105328 -215419250 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 12105328 12105749 -215418829 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 12105749 12105903 -215418675 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 12106003 12106460 -215418118 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 12106473 12106612 -215417966 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 12106678 12107044 -215417534 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 12107096 12107280 -215417298 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 12107475 12107816 -215416762 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 12107851 12108389 -215416189 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 12108397 12108548 -215416030 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 12108844 12108870 -215415708 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 12108911 12109339 -215415239 - MER57B LTR ERV1 0 434 1 12840 106 91 59 chr3 12109339 12109716 -215414862 - MER57B-int LTR ERV1 0 7537 7174 2421 68 0 3 chr3 12109716 12110011 -215414567 + AluY SINE Alu 1 294 -17 12840 106 91 59 chr3 12110011 12111795 -215412783 - MER57B-int LTR ERV1 -363 7174 5307 6073 130 57 28 chr3 12111786 12113446 -215411132 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 12113442 12113493 -215411085 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 12113469 12114984 -215409594 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 12114981 12115638 -215408940 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 12115638 12116064 -215408514 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 12116079 12116207 -215408371 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 12116260 12116399 -215408179 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 12116604 12117044 -215407534 + MLT1H LTR MaLR 3 555 0 2085 131 3 0 chr3 12117157 12117460 -215407118 - AluSx SINE Alu 0 304 1 22 0 0 0 chr3 12118147 12118169 -215406409 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 12118699 12118748 -215405830 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 12118873 12118966 -215405612 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 12119079 12119111 -215405467 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 12119198 12119255 -215405323 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 12119834 12119942 -215404636 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 12120012 12120074 -215404504 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 12120075 12120262 -215404316 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 12120263 12120504 -215404074 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 12120621 12120748 -215403830 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 12120765 12120894 -215403684 - MER5B DNA MER1_type 0 178 50 183 80 0 0 chr3 12121235 12121260 -215403318 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 251 89 67 0 chr3 12122052 12122097 -215402481 + CT-rich Low_complexity Low_complexity 3 50 0 1542 201 7 0 chr3 12122097 12122371 -215402207 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 12122455 12122608 -215401970 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 12122654 12122743 -215401835 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 12122757 12122875 -215401703 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 12122880 12123207 -215401371 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 12123248 12123618 -215400960 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 12123980 12124383 -215400195 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 12124937 12125083 -215399495 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 12125106 12125223 -215399355 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 12125322 12125614 -215398964 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 12126744 12127103 -215397475 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 12127511 12127531 -215397047 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 903 110 0 0 chr3 12127536 12127654 -215396924 - AluSq/x SINE Alu -195 118 1 832 286 67 0 chr3 12177822 12178046 -215346532 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 12178824 12178908 -215345670 - MIR SINE MIR -12 250 166 1846 72 5 0 chr3 12178911 12179134 -215345444 - AluSp SINE Alu -3 310 87 206 295 16 0 chr3 12179134 12179195 -215345383 - MIR SINE MIR -114 94 33 1990 145 3 0 chr3 12179200 12179513 -215345065 - AluSx SINE Alu 0 314 1 189 224 259 35 chr3 12179778 12179894 -215344684 - MIR3 SINE MIR -62 146 5 196 330 73 43 chr3 12180316 12180549 -215344029 + L2 LINE L2 2546 2785 -529 246 279 34 32 chr3 12180698 12180845 -215343733 - MIR SINE MIR -44 218 2 330 300 169 25 chr3 12180960 12181120 -215343458 - MIR3 SINE MIR -6 202 20 238 349 46 0 chr3 12181695 12181804 -215342774 - MIR SINE MIR -117 145 32 234 333 30 0 chr3 12182419 12182518 -215342060 - MER103 DNA DNA -2 164 63 1062 169 62 5 chr3 12182714 12182909 -215341669 + MER1B DNA MER1_type 4 209 -88 332 228 69 50 chr3 12183009 12183110 -215341468 + L2 LINE L2 3173 3275 -38 557 298 26 37 chr3 12183579 12183770 -215340808 - MIR3 SINE MIR -3 205 17 23 0 0 0 chr3 12183815 12183838 -215340740 + AT_rich Low_complexity Low_complexity 1 23 0 3749 187 30 21 chr3 12183838 12184537 -215340041 - L1MB7 LINE L1 -77 6107 5399 2152 141 13 0 chr3 12184537 12184841 -215339737 - AluJb SINE Alu -4 308 1 3749 187 30 21 chr3 12184841 12184917 -215339661 - L1MB7 LINE L1 -785 5399 5325 846 135 8 23 chr3 12184917 12185050 -215339528 - FLAM_C SINE Alu -2 131 1 413 276 40 63 chr3 12185384 12185558 -215339020 - L2 LINE L2 0 3272 3103 233 274 281 38 chr3 12185583 12185846 -215338732 + L2 LINE L2 2425 2751 -563 189 324 88 0 chr3 12185860 12185962 -215338616 + L2 LINE L2 2964 3074 -198 1159 234 100 30 chr3 12185964 12186404 -215338174 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 12186534 12186638 -215337940 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 12186646 12186721 -215337857 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 12186857 12186939 -215337639 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 12186958 12187075 -215337503 + MIR SINE MIR 19 141 -67 435 267 93 0 chr3 12188295 12188456 -215336122 + Charlie8 DNA MER1_type 53 228 -2189 851 269 68 56 chr3 12188587 12189398 -215335180 - L1MEd LINE L1 -858 1632 845 2604 44 0 0 chr3 12189415 12189708 -215334870 - AluY SINE Alu -18 293 1 2420 90 63 0 chr3 12190488 12190822 -215333756 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 12190895 12190933 -215333645 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 219 320 33 65 chr3 12191414 12191567 -215333011 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 12191576 12191757 -215332821 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 12191778 12191877 -215332701 + L2 LINE L2 3141 3245 -27 205 229 53 135 chr3 12191906 12192076 -215332502 - L2 LINE L2 -246 3026 2871 747 219 43 12 chr3 12192150 12192314 -215332264 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 12192325 12192620 -215331958 + AluJo SINE Alu 1 297 -15 206 308 70 92 chr3 12192636 12193039 -215331539 - L2 LINE L2 -557 2757 2364 1064 163 16 0 chr3 12193856 12194040 -215330538 - MER5A DNA MER1_type -2 187 1 284 263 124 25 chr3 12194466 12194629 -215329949 + MIR3 SINE MIR 21 171 -37 876 239 84 66 chr3 12195125 12195697 -215328881 - L1ME4a LINE L1 -18 6103 5522 310 219 0 0 chr3 12195711 12195775 -215328803 + L2 LINE L2 3200 3263 -9 206 283 0 0 chr3 12195781 12195827 -215328751 + MIR SINE MIR 106 151 -57 621 269 26 52 chr3 12195931 12196199 -215328379 + MIR SINE MIR 2 262 0 2074 211 47 10 chr3 12196827 12197314 -215327264 - MLT1D LTR MaLR 0 505 1 199 254 48 16 chr3 12197325 12197388 -215327190 - L2 LINE L2 0 3313 3249 1084 222 110 76 chr3 12197554 12197595 -215326983 - MER113 DNA MER1_type? 0 521 483 1961 121 74 9 chr3 12197595 12197934 -215326644 - MER46B DNA MER2_type 0 236 1 1084 222 110 76 chr3 12197934 12198391 -215326187 - MER113 DNA MER1_type? -38 483 6 490 274 8 0 chr3 12199387 12199511 -215325067 + MIR SINE MIR 73 197 -65 568 270 15 7 chr3 12199539 12199676 -215324902 - MIR SINE MIR -105 157 20 273 227 96 18 chr3 12199776 12199875 -215324703 + MIR SINE MIR 28 148 -60 36 116 0 0 chr3 12200347 12200511 -215324067 + AT_rich Low_complexity Low_complexity 1 164 0 22 89 0 0 chr3 12200545 12200590 -215323988 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 12200635 12200663 -215323915 + AT_rich Low_complexity Low_complexity 1 28 0 59 46 0 0 chr3 12200696 12200783 -215323795 + AT_rich Low_complexity Low_complexity 1 87 0 351 295 103 6 chr3 12201182 12201338 -215323240 + LTR16A LTR ERVL 167 337 -113 375 226 54 0 chr3 12201570 12201663 -215322915 + MIR SINE MIR 47 144 -64 529 258 65 97 chr3 12201764 12202043 -215322535 + L2 LINE L2 3002 3271 -1 217 222 0 0 chr3 12202134 12202170 -215322408 - MIR SINE MIR -71 191 156 1592 174 28 9 chr3 12203421 12203738 -215320840 - MER33 DNA MER1_type 0 324 2 2609 141 22 4 chr3 12203973 12204427 -215320151 + L1MB3 LINE L1 5707 6168 -15 513 295 78 26 chr3 12204488 12204681 -215319897 - MIR SINE MIR -37 225 23 1443 276 48 36 chr3 12204697 12205284 -215319294 + L2 LINE L2 2718 3311 -2 267 257 48 67 chr3 12205288 12205315 -215319263 - MIR SINE MIR -61 201 175 498 243 27 0 chr3 12205315 12205426 -215319152 + MER81 DNA DNA 1 114 0 267 257 48 67 chr3 12205426 12205503 -215319075 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 12205595 12205753 -215318825 + MIR SINE MIR 8 180 -62 652 352 0 8 chr3 12205762 12206009 -215318569 - LTR16A LTR ERVL 0 450 206 838 323 114 28 chr3 12207718 12208155 -215316423 - L3 LINE CR1 -8 1569 1095 1978 120 3 7 chr3 12208199 12208498 -215316080 + AluSx SINE Alu 1 298 -14 837 127 0 0 chr3 12208900 12209018 -215315560 + AluJb SINE Alu 1 118 -194 1907 232 38 15 chr3 12209104 12209583 -215314995 + L1ME1 LINE L1 5596 6085 -81 368 283 0 33 chr3 12209606 12209698 -215314880 + MIR3 SINE MIR 103 191 -17 186 71 0 0 chr3 12210109 12210137 -215314441 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 334 305 184 12 chr3 12210644 12210900 -215313678 + L2 LINE L2 2887 3186 -86 711 282 44 5 chr3 12210911 12211114 -215313464 - MIR SINE MIR -1 261 51 534 287 126 12 chr3 12211114 12211281 -215313297 + MER91A DNA MER1_type 1 186 -10 244 182 45 0 chr3 12211270 12211314 -215313264 - MIR SINE MIR -212 50 5 * 431 260 41 41 chr3 12212049 12212195 -215312383 + MIR SINE MIR 67 212 -50 290 385 65 6 chr3 12213124 12213475 -215311103 - L2 LINE L2 -2361 953 582 514 220 147 39 chr3 12213494 12213826 -215310752 - MLT1J LTR MaLR -35 476 11 462 257 142 0 chr3 12213855 12213968 -215310610 - L2 LINE L2 -2 3270 3142 249 313 131 28 chr3 12214117 12214293 -215310285 - L2 LINE L2 0 3313 3120 222 194 32 16 chr3 12215164 12215226 -215309352 + T-rich Low_complexity Low_complexity 2 64 0 245 176 0 0 chr3 12215228 12215279 -215309299 - L1MB3 LINE L1 -1 6182 6132 238 335 68 0 chr3 12215291 12215482 -215309096 - MER113 DNA MER1_type? -313 208 5 470 293 29 7 chr3 12215482 12215622 -215308956 - MIR3 SINE MIR -51 157 15 245 333 37 9 chr3 12216056 12216164 -215308414 + MIR SINE MIR 43 153 -109 207 263 200 27 chr3 12216243 12216391 -215308187 - MIR SINE MIR -62 200 22 289 150 50 0 chr3 12216552 12216612 -215307966 + MER103 DNA DNA 93 155 -11 519 245 148 0 chr3 12217155 12217310 -215307268 + MER45A DNA AcHobo 1 178 0 329 192 167 39 chr3 12217315 12217393 -215307185 + L2 LINE L2 3147 3234 -38 2476 147 70 2 chr3 12218509 12218952 -215305626 - L1MB3 LINE L1 -7 6176 5704 279 258 27 30 chr3 12219281 12219436 -215305142 + MIR SINE MIR 34 235 -27 959 189 115 86 chr3 12219514 12219958 -215304620 - L1MC4 LINE L1 -601 7441 6985 180 224 0 149 chr3 12220031 12220098 -215304480 - MIR SINE MIR -16 246 190 2593 184 80 19 chr3 12220111 12220637 -215303941 - MLT1F1 LTR MaLR -9 558 1 607 201 255 0 chr3 12220652 12220801 -215303777 - MIR SINE MIR -64 198 12 477 100 0 0 chr3 12221154 12221224 -215303354 - L1PA15 LINE L1 -9 6156 6087 928 264 97 36 chr3 12221964 12222294 -215302284 + MLT1K LTR MaLR 84 433 -155 477 0 0 0 chr3 12222301 12222354 -215302224 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 219 289 115 39 chr3 12222474 12222578 -215302000 - L2 LINE L2 -5 3308 3197 272 284 197 0 chr3 12222590 12222717 -215301861 + MLT1K LTR MaLR 419 570 -18 1692 165 0 4 chr3 12223815 12224094 -215300484 - AluJb SINE Alu -22 290 13 667 301 9 19 chr3 12224178 12224389 -215300189 + MIR SINE MIR 47 254 -8 321 307 69 55 chr3 12224405 12224623 -215299955 + L1MC4a LINE L1 5841 6061 -1747 23 33 0 0 chr3 12224703 12224733 -215299845 + AT_rich Low_complexity Low_complexity 1 30 0 284 260 13 13 chr3 12225267 12225344 -215299234 - MIR SINE MIR -115 93 17 278 401 7 0 chr3 12225931 12226068 -215298510 + (TG)n Simple_repeat Simple_repeat 1 138 0 189 107 0 0 chr3 12226163 12226191 -215298387 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 309 259 158 51 chr3 12226619 12226777 -215297801 + MLT1H LTR MaLR 56 230 -319 628 203 17 0 chr3 12226829 12226947 -215297631 + MLT1K LTR MaLR 436 555 0 237 256 77 39 chr3 12226949 12227027 -215297551 + MIR3 SINE MIR 88 168 -40 180 286 24 71 chr3 12227055 12227139 -215297439 - MIR SINE MIR -82 180 101 1820 157 0 25 chr3 12227397 12227715 -215296863 + AluJo SINE Alu 1 310 -2 193 310 103 0 chr3 12227987 12228045 -215296533 - L3 LINE CR1 -934 643 580 1899 133 0 16 chr3 12228520 12228828 -215295750 - AluSx SINE Alu -9 303 1 911 169 28 17 chr3 12228863 12229041 -215295537 - AluJo SINE Alu -12 300 121 2249 215 19 24 chr3 12229048 12229540 -215295038 - L1MB7 LINE L1 -14 6170 5679 535 313 57 32 chr3 12229540 12229957 -215294621 - L1MC4a LINE L1 -297 5824 5394 351 283 115 37 chr3 12230446 12230637 -215293941 - MIR SINE MIR -34 228 23 529 233 200 33 chr3 12231489 12231699 -215292879 + LTR16A LTR ERVL 16 260 -190 1548 153 51 0 chr3 12232165 12232440 -215292138 - AluJo SINE Alu -23 289 1 474 228 102 0 chr3 12232513 12232640 -215291938 + MIR SINE MIR 102 241 -21 352 68 0 0 chr3 12233484 12233528 -215291050 + MIR3 SINE MIR 115 158 -50 1110 178 5 0 chr3 12233529 12233714 -215290864 + MER5A DNA MER1_type 2 187 -2 588 274 58 58 chr3 12233745 12234074 -215290504 - MER102b DNA MER1_type -12 329 1 891 352 115 15 chr3 12234451 12235102 -215289476 + L3 LINE CR1 786 1501 -76 1047 269 97 71 chr3 12235139 12235675 -215288903 + MLT1K LTR MaLR 37 586 -2 354 319 101 29 chr3 12236052 12236259 -215288319 - MIR SINE MIR -6 256 35 246 360 0 0 chr3 12236639 12236714 -215287864 + MER5A DNA MER1_type 112 186 -3 478 224 48 40 chr3 12237655 12237780 -215286798 - MIR SINE MIR -7 255 130 2524 175 60 28 chr3 12237894 12238430 -215286148 - L1MC2 LINE L1 -151 6193 5641 258 113 57 0 chr3 12238431 12238484 -215286094 - L1MC2 LINE L1 0 6344 6289 281 128 64 28 chr3 12238658 12238767 -215285811 + (TA)n Simple_repeat Simple_repeat 1 113 0 810 219 56 85 chr3 12238781 12238867 -215285711 - L1MC2 LINE L1 -1865 5943 5856 1912 138 0 7 chr3 12238867 12239158 -215285420 + AluSx SINE Alu 1 289 -23 810 219 56 85 chr3 12239158 12239390 -215285188 - L1MC2 LINE L1 -1952 5856 5634 511 203 23 73 chr3 12239504 12239681 -215284897 + L1MC5 LINE L1 7758 7925 -36 498 297 36 0 chr3 12240140 12240278 -215284300 - MIR SINE MIR -72 190 48 587 223 192 16 chr3 12240512 12240705 -215283873 + MIR SINE MIR 6 232 -30 699 133 285 0 chr3 12240717 12240875 -215283703 - MER3 DNA MER1_type -6 203 1 408 303 48 37 chr3 12241191 12241379 -215283199 + MIR SINE MIR 21 210 -52 351 275 176 14 chr3 12241454 12241596 -215282982 + MIR SINE MIR 20 184 -78 367 283 87 29 chr3 12243069 12243207 -215281371 + MIR SINE MIR 83 228 -34 253 200 20 0 chr3 12243643 12243693 -215280885 - L2 LINE L2 -244 3028 2978 204 255 123 47 chr3 12244591 12244697 -215279881 + L2 LINE L2 3159 3272 0 1988 125 0 0 chr3 12244840 12245149 -215279429 + AluSx SINE Alu 1 309 0 379 180 140 20 chr3 12245290 12245390 -215279188 - MIR SINE MIR -10 252 141 624 277 36 111 chr3 12245412 12245433 -215279145 - L2 LINE L2 -267 3005 2984 2730 82 6 3 chr3 12245433 12245787 -215278791 - THE1A LTR MaLR 0 355 1 624 277 36 111 chr3 12245787 12246471 -215278107 - L2 LINE L2 -288 2984 2367 191 339 89 9 chr3 12247315 12247427 -215277151 - MIR SINE MIR -113 149 29 402 324 0 10 chr3 12247659 12247761 -215276817 + MIR SINE MIR 32 132 -76 264 280 187 13 chr3 12247766 12247916 -215276662 - MER20B DNA MER1_type -43 176 1 1178 185 94 42 chr3 12247920 12247997 -215276581 - MER33 DNA MER1_type -2261 324 252 1988 141 0 6 chr3 12247997 12248309 -215276269 + AluSx SINE Alu 1 310 -2 1178 185 94 42 chr3 12248309 12248539 -215276039 - MER33 DNA MER1_type -2333 252 1 418 308 55 52 chr3 12248989 12249317 -215275261 + L2 LINE L2 2814 3142 -171 917 139 13 6 chr3 12249338 12249496 -215275082 - AluSg/x SINE Alu -22 290 132 274 263 97 79 chr3 12249499 12249613 -215274965 + L2 LINE L2 3155 3270 -43 21 0 0 0 chr3 12249865 12249886 -215274692 + AT_rich Low_complexity Low_complexity 1 21 0 678 152 0 0 chr3 12250389 12250488 -215274090 - Tigger7 DNA MER2_type 0 2487 2389 * 1292 184 0 107 chr3 12250486 12250785 -215273793 - Tigger7 DNA MER2_type -2220 267 1 892 172 40 0 chr3 12251192 12251366 -215273212 + L1MC3 LINE L1 7605 7785 0 222 91 0 0 chr3 12251669 12251702 -215272876 + (ATG)n Simple_repeat Simple_repeat 1 33 0 500 276 135 5 chr3 12251916 12252108 -215272470 + MIR SINE MIR 33 249 -13 1587 191 0 0 chr3 12252124 12252406 -215272172 + AluJo SINE Alu 1 282 -30 513 84 0 0 chr3 12252408 12252479 -215272099 + (TA)n Simple_repeat Simple_repeat 1 71 0 42 48 0 0 chr3 12252483 12252546 -215272032 + AT_rich Low_complexity Low_complexity 1 63 0 260 212 41 53 chr3 12252701 12252804 -215271774 - L1M4 LINE L1 -1938 4208 4101 264 257 79 0 chr3 12252842 12252943 -215271635 + L1M4 LINE L1 3941 4049 -2097 364 226 55 65 chr3 12253090 12253289 -215271289 - L1M4 LINE L1 -3162 2984 2788 1844 138 7 16 chr3 12253323 12253628 -215270950 - AluJo SINE Alu -5 307 6 385 279 56 101 chr3 12253656 12254298 -215270280 + L1ME4a LINE L1 4708 5320 -826 1146 166 50 22 chr3 12254370 12254648 -215269930 + AluJo SINE Alu 14 299 -13 847 318 61 25 chr3 12254659 12255168 -215269410 + L1ME4a LINE L1 5368 5894 -276 440 115 0 13 chr3 12255796 12255874 -215268704 + (TGGA)n Simple_repeat Simple_repeat 3 79 0 29 28 0 0 chr3 12256045 12256081 -215268497 + AT_rich Low_complexity Low_complexity 1 36 0 21 98 0 0 chr3 12256108 12256159 -215268419 + AT_rich Low_complexity Low_complexity 1 51 0 312 323 54 23 chr3 12256619 12256749 -215267829 - MIR SINE MIR -32 230 97 328 225 67 34 chr3 12256795 12256884 -215267694 - L1MC4 LINE L1 -1339 6703 6612 301 260 10 67 chr3 12256800 12256904 -215267674 + L1MC4 LINE L1 6611 6708 -1334 * 303 286 22 22 chr3 12257044 12257135 -215267443 + L1MC4 LINE L1 6612 6702 -1340 231 185 111 0 chr3 12257148 12257229 -215267349 + L1MC4 LINE L1 6614 6703 -1339 310 264 7 7 chr3 12257232 12257372 -215267206 + (TA)n Simple_repeat Simple_repeat 2 141 0 1718 156 30 3 chr3 12257374 12257669 -215266909 - AluJb SINE Alu -9 303 1 185 259 69 35 chr3 12257677 12257735 -215266843 - L2 LINE L2 -17 3296 3237 851 282 58 47 chr3 12257747 12257926 -215266652 - LTR16A LTR ERVL 0 450 274 4552 95 5 5 chr3 12257926 12258569 -215266009 - L1PA12 LINE L1 -1 6167 5525 851 282 58 47 chr3 12258569 12258754 -215265824 - LTR16A LTR ERVL -176 274 82 273 200 0 80 chr3 12258771 12258846 -215265732 - L2 LINE L2 -86 3227 3159 395 129 0 16 chr3 12259271 12259333 -215265245 - MLT1L LTR MaLR -8 607 547 680 291 66 21 chr3 12260201 12260490 -215264088 + L1MC4a LINE L1 5666 5967 -1841 1421 174 13 0 chr3 12261332 12261561 -215263017 - MLT1A1 LTR MaLR 0 365 134 1157 96 39 0 chr3 12261561 12261717 -215262861 - MSTB LTR MaLR 0 426 265 240 227 121 0 chr3 12262085 12262151 -215262427 + MIR SINE MIR 91 164 -98 389 218 150 8 chr3 12262201 12262334 -215262244 + L1ME4a LINE L1 5968 6119 -2 2343 76 3 0 chr3 12262455 12262758 -215261820 + AluY SINE Alu 1 304 -7 508 339 213 26 chr3 12262762 12263156 -215261422 - L3 LINE CR1 -539 1038 719 1573 167 72 10 chr3 12263156 12263449 -215261129 + AluJb SINE Alu 1 311 -1 508 339 213 26 chr3 12263449 12263659 -215260919 - L3 LINE CR1 -858 719 321 255 265 48 48 chr3 12264261 12264327 -215260251 + MER5B DNA MER1_type 1 69 -109 1297 136 3 183 chr3 12264327 12264688 -215259890 + AluJb SINE Alu 1 296 -16 255 265 48 48 chr3 12264688 12264704 -215259874 + MER5B DNA MER1_type 68 83 -95 202 118 20 98 chr3 12264742 12264793 -215259785 + MIR3 SINE MIR 113 159 -49 229 290 43 32 chr3 12264867 12264960 -215259618 - MIR3 SINE MIR -38 170 77 710 267 94 36 chr3 12265467 12265624 -215258954 + L2 LINE L2 2927 3108 -205 1441 198 7 16 chr3 12265624 12265927 -215258651 - AluJo SINE Alu -12 300 1 710 267 94 36 chr3 12265927 12266046 -215258532 + L2 LINE L2 3108 3219 -94 184 271 34 17 chr3 12266045 12266104 -215258474 - L2 LINE L2 -8 3305 3246 * 352 272 65 19 chr3 12266317 12266472 -215258106 + MIR SINE MIR 21 146 -62 2530 48 0 6 chr3 12267337 12267648 -215256930 + AluY SINE Alu 1 309 -2 378 355 39 20 chr3 12267887 12268090 -215256488 + L2 LINE L2 2732 2938 -376 228 288 12 12 chr3 12268090 12268103 -215256475 - L1MA10 LINE L1 -86 6248 6236 581 222 44 0 chr3 12268103 12268238 -215256340 - L1ME2 LINE L1 -91 6073 5933 410 160 20 60 chr3 12268243 12268343 -215256235 + L1ME2 LINE L1 6009 6104 -60 203 308 125 10 chr3 12269112 12269216 -215255362 + MIR SINE MIR 24 139 -69 1101 281 56 35 chr3 12269243 12269489 -215255089 - MLT1K LTR MaLR 0 476 214 1917 144 3 0 chr3 12269489 12269794 -215254784 - AluJb SINE Alu -6 306 1 1101 281 56 35 chr3 12269794 12270010 -215254568 - MLT1K LTR MaLR -262 214 4 248 242 61 30 chr3 12270341 12270440 -215254138 + L2 LINE L2 2881 2982 -331 464 313 62 0 chr3 12270515 12270643 -215253935 + L2 LINE L2 3134 3269 -3 2201 157 56 12 chr3 12270854 12271262 -215253316 + MSTB LTR MaLR 1 426 0 280 288 14 0 chr3 12271294 12271367 -215253211 - MER103 DNA DNA -3 163 90 381 347 41 41 chr3 12271399 12271562 -215253016 - MIR SINE MIR -5 257 92 2085 122 0 0 chr3 12271562 12271857 -215252721 + AluSg SINE Alu 1 295 -15 381 347 41 41 chr3 12271857 12271938 -215252640 - MIR SINE MIR -169 93 13 344 339 54 24 chr3 12272343 12272511 -215252067 - L2 LINE L2 -3 3269 3097 234 215 13 51 chr3 12273292 12273371 -215251207 + CT-rich Low_complexity Low_complexity 4 79 0 1987 165 120 2 chr3 12273409 12273802 -215250776 - L1MB3 LINE L1 0 6183 5745 201 352 80 23 chr3 12274175 12274351 -215250227 + L2 LINE L2 3008 3193 -79 604 156 41 16 chr3 12275259 12275381 -215249197 + MLT1B LTR MaLR 2 126 -264 1760 125 0 46 chr3 12275382 12275663 -215248915 + AluJb SINE Alu 1 268 -44 301 74 19 19 chr3 12275665 12275719 -215248859 + (TAAAA)n Simple_repeat Simple_repeat 1 54 0 726 308 205 25 chr3 12275729 12276372 -215248206 - L2 LINE L2 -261 3052 2281 1845 216 29 5 chr3 12276372 12276789 -215247789 + L1MB7 LINE L1 5757 6183 -1 726 308 205 25 chr3 12276789 12276854 -215247724 - L2 LINE L2 -1032 2281 2229 400 69 48 18 chr3 12277206 12277274 -215247304 - AluSq/x SINE Alu -166 137 76 437 253 99 31 chr3 12277825 12277987 -215246591 - MIR SINE MIR -89 173 1 252 0 0 0 chr3 12278485 12278513 -215246065 + (TG)n Simple_repeat Simple_repeat 2 29 0 257 234 129 53 chr3 12278611 12278782 -215245796 - L1ME4a LINE L1 -6 6115 5932 303 244 23 122 chr3 12278809 12278981 -215245597 - MIR SINE MIR -1 261 107 329 205 205 12 chr3 12279232 12279315 -215245263 + MLT1D LTR MaLR 8 106 -399 1904 131 0 25 chr3 12279323 12279643 -215244935 + AluJo SINE Alu 1 312 0 1017 215 116 59 chr3 12279659 12280013 -215244565 - MLT1C LTR MaLR 0 467 94 27 0 0 0 chr3 12280022 12280049 -215244529 + AT_rich Low_complexity Low_complexity 1 27 0 1121 158 0 6 chr3 12280079 12280256 -215244322 - AluSg/x SINE Alu -5 307 132 1871 131 0 10 chr3 12280276 12280581 -215243997 + AluSc SINE Alu 1 302 -7 385 155 28 28 chr3 12280610 12280681 -215243897 - MER5A DNA MER1_type -109 80 10 1503 155 0 49 chr3 12280683 12280967 -215243611 - AluJo SINE Alu -25 287 18 205 0 0 0 chr3 12280971 12280994 -215243584 - MER5C DNA MER1_type -298 26 4 1292 202 0 8 chr3 12281090 12281337 -215243241 - L1PB4 LINE L1 -4 6152 5908 1823 107 55 0 chr3 12281355 12281666 -215242912 - AluY SINE Alu 0 326 1 748 255 101 49 chr3 12281666 12281972 -215242606 - Charlie2 DNA MER1_type -2539 323 2 895 277 126 28 chr3 12282414 12282883 -215241695 - MER113 DNA MER1_type? 0 521 7 403 252 94 38 chr3 12283423 12283582 -215240996 + MIR SINE MIR 95 262 0 652 263 72 16 chr3 12284058 12284252 -215240326 + MIR SINE MIR 57 261 -1 238 298 123 18 chr3 12284306 12284420 -215240158 + MIR3 SINE MIR 35 160 -48 418 250 26 9 chr3 12284465 12284581 -215239997 - MER117 DNA MER1_type -79 118 1 265 186 0 0 chr3 12284620 12284663 -215239915 + MSTA LTR MaLR 1 43 -385 291 207 0 0 chr3 12286026 12286084 -215238494 - L1ME3A LINE L1 -11 6159 6102 1938 98 0 4 chr3 12286931 12287205 -215237373 + L1PA7 LINE L1 5877 6149 -5 269 372 41 14 chr3 12287540 12287685 -215236893 + MIR SINE MIR 99 247 -15 191 374 148 30 chr3 12287707 12288073 -215236505 - L2 LINE L2 -11 3261 2853 1737 144 22 39 chr3 12288339 12288651 -215235927 + AluJo SINE Alu 4 310 -2 282 229 29 0 chr3 12288795 12288865 -215235713 - MIR SINE MIR -83 125 54 251 191 138 64 chr3 12289284 12289378 -215235200 - MIR SINE MIR -58 204 104 450 0 0 0 chr3 12289881 12289931 -215234647 + (CA)n Simple_repeat Simple_repeat 2 51 0 911 239 41 18 chr3 12290730 12290948 -215233630 + MER58A DNA MER1_type 2 224 0 765 300 84 9 chr3 12290990 12291323 -215233255 - L1ME4a LINE L1 -83 6038 5681 297 75 0 0 chr3 12291324 12291364 -215233214 + (TG)n Simple_repeat Simple_repeat 1 40 0 1724 143 21 7 chr3 12291886 12292166 -215232412 - AluSx SINE Alu -28 284 1 816 121 9 0 chr3 12292384 12292500 -215232078 + FLAM_C SINE Alu 2 118 -25 269 50 0 25 chr3 12292503 12292543 -215232035 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 2102 119 0 16 chr3 12292544 12292856 -215231722 + AluSx SINE Alu 1 307 -5 186 193 0 0 chr3 12292860 12292917 -215231661 + A-rich Low_complexity Low_complexity 3 59 0 420 207 27 0 chr3 12292941 12293052 -215231526 + MER117 DNA MER1_type 1 114 -83 249 233 23 70 chr3 12293218 12293304 -215231274 + 7SK RNA RNA 7 88 -105 382 280 93 47 chr3 12293378 12293528 -215231050 - L3 LINE CR1 -454 1123 967 180 0 0 0 chr3 12293888 12293908 -215230670 + (GTGTG)n Simple_repeat Simple_repeat 1 20 0 2087 212 22 7 chr3 12294324 12294786 -215229792 - L1MB3 LINE L1 0 6183 5715 252 300 38 0 chr3 12294789 12294869 -215229709 + MIR SINE MIR 62 144 -118 510 266 47 30 chr3 12295101 12295270 -215229308 - MER20B DNA MER1_type -604 179 8 247 143 71 54 chr3 12295410 12295466 -215229112 - MLT2B3 LTR ERVL 0 520 464 230 283 0 0 chr3 12295466 12295519 -215229059 + (TG)n Simple_repeat Simple_repeat 2 54 0 2836 183 16 12 chr3 12295529 12296032 -215228546 - MLT2B3 LTR ERVL -47 507 3 319 315 127 24 chr3 12296059 12296224 -215228354 + MIR3 SINE MIR 18 199 -9 469 281 58 18 chr3 12297065 12297236 -215227342 + MIR SINE MIR 28 205 -57 327 49 0 0 chr3 12297360 12297401 -215227177 + (TG)n Simple_repeat Simple_repeat 2 42 0 702 278 68 63 chr3 12297603 12297984 -215226594 - L2 LINE L2 -338 2976 2594 516 337 37 0 chr3 12298395 12298582 -215225996 + MER91A DNA MER1_type 2 195 -1 348 319 124 9 chr3 12298663 12298776 -215225802 - L2 LINE L2 -3 3269 3144 2120 104 3 0 chr3 12298786 12299084 -215225494 - AluSg SINE Alu -11 299 1 1014 258 21 0 chr3 12299639 12299872 -215224706 + MIR SINE MIR 24 261 -1 1134 116 24 0 chr3 12301049 12301213 -215223365 + L1PA10 LINE L1 5976 6143 -25 211 296 28 46 chr3 12501566 12501674 -215022904 + L2 LINE L2 332 437 -2877 2209 116 17 0 chr3 12501775 12502077 -215022501 - AluSx SINE Alu -5 307 1 259 267 57 48 chr3 12502559 12502588 -215021990 + L2 LINE L2 1326 1353 -1961 2102 115 13 29 chr3 12502588 12502901 -215021677 - AluSx SINE Alu -4 308 1 259 267 57 48 chr3 12502901 12502976 -215021602 + L2 LINE L2 1353 1431 -1883 585 314 173 26 chr3 12503346 12504056 -215020522 + L2 LINE L2 1805 2409 -905 2340 147 18 61 chr3 12504056 12504441 -215020137 + MSTB LTR MaLR 1 401 -25 1760 162 17 26 chr3 12504441 12504578 -215020000 + AluJo SINE Alu 1 138 -174 2310 100 0 0 chr3 12504578 12504868 -215019710 + AluSc SINE Alu 1 290 -19 1760 162 17 26 chr3 12504868 12505032 -215019546 + AluJo SINE Alu 138 299 -13 2244 122 0 0 chr3 12505039 12505342 -215019236 + AluSx SINE Alu 1 303 -9 2340 147 18 61 chr3 12505342 12505391 -215019187 + MSTB LTR MaLR 407 424 -2 585 314 173 26 chr3 12505391 12505686 -215018892 + L2 LINE L2 2409 2958 -356 552 194 81 122 chr3 12506210 12506269 -215018309 + MLT1J LTR MaLR 5 65 -446 2314 104 0 0 chr3 12506269 12506566 -215018012 - AluSx SINE Alu -15 297 1 552 194 81 122 chr3 12506566 12506949 -215017629 + MLT1J LTR MaLR 65 500 -11 263 344 0 25 chr3 12508477 12508637 -215015941 + C-rich Low_complexity Low_complexity 4 159 0 350 113 0 42 chr3 12509595 12509666 -215014912 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 12510970 12511001 -215013577 + (GA)n Simple_repeat Simple_repeat 2 32 0 1974 134 22 0 chr3 12511078 12511355 -215013223 + AluSx SINE Alu 3 285 -27 3730 178 20 18 chr3 12511375 12512039 -215012539 - MER72 LTR ERV1 -57 665 1 1185 169 59 72 chr3 12512080 12512145 -215012433 + L1MB7 LINE L1 5263 5327 -847 1796 183 3 7 chr3 12512145 12512445 -215012133 + AluJb SINE Alu 1 299 -13 1185 169 59 72 chr3 12512445 12512680 -215011898 + L1MB7 LINE L1 5327 5566 -608 1997 161 14 30 chr3 12512680 12513041 -215011537 + THE1A LTR MaLR 1 355 0 1185 169 59 72 chr3 12513041 12513112 -215011466 + L1MB7 LINE L1 5566 5636 -538 340 182 0 0 chr3 12513113 12513168 -215011410 + Tigger5 DNA MER2_type 1 55 -2268 484 198 0 0 chr3 12513181 12513262 -215011316 + Tigger5 DNA MER2_type 2243 2323 0 917 148 10 91 chr3 12513265 12513322 -215011256 + L1MB7 LINE L1 5639 5699 -485 1707 188 3 0 chr3 12513322 12513614 -215010964 + AluJo SINE Alu 3 295 -17 917 148 10 91 chr3 12513614 12513765 -215010813 + L1MB7 LINE L1 5699 5830 -354 1492 159 172 99 chr3 12513765 12514130 -215010448 + MER21A LTR ERV1 9 401 -530 291 264 0 0 chr3 12514130 12514202 -215010376 + MER34 LTR ERV1 2 73 -469 2500 145 61 18 chr3 12514225 12514681 -215009897 + LTR29 LTR ERV1 137 612 -10 2551 146 27 50 chr3 12514688 12515132 -215009446 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12515132 12515448 -215009130 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12515448 12515676 -215008902 + AluSg/x SINE Alu 75 302 -10 1263 200 20 84 chr3 12515676 12515714 -215008864 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12515817 12515911 -215008667 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12516008 12516094 -215008484 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12516097 12516260 -215008318 + L1MB5 LINE L1 5832 5966 -208 1149 151 97 0 chr3 12516300 12516485 -215008093 - AluSg/x SINE Alu -26 286 84 491 185 0 0 chr3 12516762 12516843 -215007735 + FLAM_C SINE Alu 30 110 -33 222 274 47 105 chr3 12516923 12517113 -215007465 + MIR SINE MIR 76 254 -8 1264 170 185 8 chr3 12518035 12518294 -215006284 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12518550 12518572 -215006006 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12518574 12518880 -215005698 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12519738 12519820 -215004758 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12519820 12520123 -215004455 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12520123 12520216 -215004362 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12520533 12520633 -215003945 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12520641 12520793 -215003785 - MIR SINE MIR -50 212 50 2562 48 0 0 chr3 12522015 12522306 -215002272 + AluY SINE Alu 1 291 -20 860 129 0 0 chr3 12522451 12522567 -215002011 - FLAM_C SINE Alu -17 116 1 2335 107 0 0 chr3 12522594 12522892 -215001686 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12523116 12523172 -215001406 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12523180 12523261 -215001317 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2369 110 0 0 chr3 12523261 12523571 -215001007 + AluSg SINE Alu 1 310 0 1371 168 71 27 chr3 12523571 12523826 -215000752 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 248 120 0 chr3 12523864 12523997 -215000581 - L1MC/D LINE L1 -2000 5808 5660 235 231 31 31 chr3 12524233 12524298 -215000280 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12524425 12524537 -215000041 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12524567 12524679 -214999899 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12524686 12524979 -214999599 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12524979 12525212 -214999366 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12525877 12526086 -214998492 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12526111 12526383 -214998195 - AluSg SINE Alu -13 297 23 2205 110 0 13 chr3 12526527 12526827 -214997751 + AluSx SINE Alu 1 296 -16 827 137 0 8 chr3 12527209 12527333 -214997245 + AluJo SINE Alu 12 134 -178 185 268 36 0 chr3 12527384 12527440 -214997138 + MIR SINE MIR 7 64 -198 1765 170 3 10 chr3 12527444 12527733 -214996845 + AluJo SINE Alu 1 287 -25 400 257 96 0 chr3 12527752 12527888 -214996690 + MIR SINE MIR 110 258 -4 939 181 0 0 chr3 12527961 12528110 -214996468 - AluJb SINE Alu -26 286 138 993 217 58 4 chr3 12528153 12528411 -214996167 - L1ME3 LINE L1 -1 6161 5890 1065 79 0 0 chr3 12528556 12528683 -214995895 + 7SLRNA srpRNA srpRNA 75 201 -119 2212 104 13 7 chr3 12529090 12529388 -214995190 - AluSx SINE Alu -10 302 3 183 239 0 70 chr3 12529774 12529845 -214994733 + MIR SINE MIR 163 228 -34 1861 175 68 0 chr3 12529863 12530189 -214994389 - MER7A DNA MER2_type 0 346 1 211 222 143 0 chr3 12530285 12530348 -214994230 - L2 LINE L2 -1 3312 3241 575 286 38 5 chr3 12531034 12531219 -214993359 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12531437 12531457 -214993121 + (TG)n Simple_repeat Simple_repeat 2 21 0 1867 135 18 7 chr3 12531604 12531908 -214992670 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12533367 12533389 -214991189 + AT_rich Low_complexity Low_complexity 1 22 0 1780 157 11 0 chr3 12533937 12534223 -214990355 - AluJb SINE Alu -23 289 1 230 326 73 59 chr3 12534326 12534614 -214989964 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12534985 12535034 -214989544 + AT_rich Low_complexity Low_complexity 1 49 0 1655 183 7 10 chr3 12535166 12535461 -214989117 - AluJo SINE Alu -16 296 3 486 240 185 7 chr3 12535592 12535738 -214988840 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12535884 12535905 -214988673 + AT_rich Low_complexity Low_complexity 1 21 0 2622 57 0 13 chr3 12535991 12536306 -214988272 - AluY SINE Alu 0 311 1 1537 189 23 27 chr3 12536949 12537250 -214987328 - AluJo SINE Alu -12 300 1 2155 117 7 10 chr3 12537848 12538148 -214986430 - AluSx SINE Alu -13 299 1 2091 113 21 0 chr3 12539087 12539369 -214985209 + AluSq SINE Alu 1 288 -25 392 184 61 41 chr3 12541946 12542044 -214982534 - Charlie1 DNA MER1_type -255 2506 2407 834 172 77 107 chr3 12542052 12542157 -214982421 - Charlie1 DNA MER1_type -613 2148 2041 1658 126 22 0 chr3 12542157 12542388 -214982190 + AluSx SINE Alu 1 236 -76 834 172 77 107 chr3 12542388 12542543 -214982035 - Charlie1 DNA MER1_type -720 2041 1896 1289 241 100 47 chr3 12542545 12543017 -214981561 - Charlie1 DNA MER1_type -977 1784 1228 1043 198 171 0 chr3 12543017 12543275 -214981303 - MER2 DNA MER2_type 0 345 44 2212 187 202 59 chr3 12543330 12543738 -214980840 - Charlie1 DNA MER1_type -1524 1237 889 1216 208 36 46 chr3 12543738 12544041 -214980537 + AluJo SINE Alu 1 300 -12 2212 187 202 59 chr3 12544041 12544665 -214979913 - Charlie1 DNA MER1_type -1872 889 57 227 226 32 16 chr3 12545008 12545070 -214979508 + MIR SINE MIR 83 145 -117 3477 118 135 38 chr3 12545099 12545480 -214979098 - Tigger1 DNA MER2_type 0 2418 2075 1964 133 43 7 chr3 12545480 12545781 -214978797 - AluSx SINE Alu 0 312 1 3477 118 135 38 chr3 12545781 12546057 -214978521 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12547312 12547354 -214977224 - MIR SINE MIR -6 256 217 1624 160 34 27 chr3 12547825 12548119 -214976459 + AluJb SINE Alu 1 296 -16 307 164 0 15 chr3 12548684 12548751 -214975827 - Charlie5 DNA MER1_type -2505 107 42 1048 90 131 95 chr3 12549283 12549505 -214975073 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12554637 12554673 -214969905 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12555775 12555804 -214968774 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 12557307 12557328 -214967250 + AT_rich Low_complexity Low_complexity 1 21 0 1354 66 6 6 chr3 12560498 12560679 -214963899 + AluYa5 SINE Alu 118 298 -13 2176 129 0 0 chr3 12561100 12561403 -214963175 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 12561747 12561768 -214962810 + AT_rich Low_complexity Low_complexity 1 21 0 2230 109 3 0 chr3 12561773 12562067 -214962511 + AluSp SINE Alu 1 295 -18 655 189 24 0 chr3 12562084 12562211 -214962367 - MER94 DNA DNA -4 130 1 30 0 0 0 chr3 12562411 12562441 -214962137 + AT_rich Low_complexity Low_complexity 1 30 0 285 185 266 81 chr3 12562509 12562817 -214961761 - L1MC5 LINE L1 -399 7562 7198 1292 157 114 12 chr3 12562828 12563171 -214961407 - Charlie1 DNA MER1_type -41 2720 2343 1528 240 53 32 chr3 12563286 12563811 -214960767 - L1MC5 LINE L1 -813 7148 6613 1564 133 92 19 chr3 12564078 12564433 -214960145 - Tigger3(Golem) DNA MER2_type -2 3027 3 1842 124 4 4 chr3 12564932 12565199 -214959379 - AluSx SINE Alu -1 311 45 21 36 0 0 chr3 12565409 12565437 -214959141 + AT_rich Low_complexity Low_complexity 1 28 0 365 274 26 26 chr3 12565653 12565770 -214958808 + MIR SINE MIR 146 262 0 21 57 0 0 chr3 12565979 12566014 -214958564 + AT_rich Low_complexity Low_complexity 1 35 0 1677 183 3 37 chr3 12566442 12566765 -214957813 - AluJo SINE Alu 0 312 1 490 213 127 27 chr3 12566771 12566960 -214957618 + L1MC5 LINE L1 7687 7902 -59 707 189 8 0 chr3 12566960 12567082 -214957496 - FLAM_C SINE Alu -10 123 1 490 213 127 27 chr3 12567082 12567113 -214957465 + L1MC5 LINE L1 7902 7929 -32 324 0 0 0 chr3 12567704 12567740 -214956838 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 12567740 12567761 -214956817 + AT_rich Low_complexity Low_complexity 1 21 0 2111 104 4 0 chr3 12567815 12568129 -214956449 - AluSg SINE Alu 0 315 1 22 0 0 0 chr3 12568869 12568891 -214955687 + AT_rich Low_complexity Low_complexity 1 22 0 1264 166 107 45 chr3 12569627 12569917 -214954661 - AluJo SINE Alu -4 308 1 1034 147 16 27 chr3 12569932 12570116 -214954462 - AluJb SINE Alu -15 297 116 342 206 162 29 chr3 12570848 12570984 -214953594 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 12570993 12571021 -214953557 + AT_rich Low_complexity Low_complexity 1 28 0 2401 76 0 0 chr3 12571538 12571839 -214952739 - AluY SINE Alu -10 301 1 30 27 0 0 chr3 12571844 12571881 -214952697 + AT_rich Low_complexity Low_complexity 1 37 0 2216 53 0 28 chr3 12571992 12572274 -214952304 - AluY SINE Alu -9 302 29 1991 99 0 0 chr3 12572618 12572871 -214951707 + AluSq SINE Alu 44 296 -17 2018 102 0 0 chr3 12572927 12573181 -214951397 - AluSq SINE Alu -59 254 1 957 178 38 0 chr3 12573474 12573631 -214950947 + AluJb SINE Alu 137 299 -13 287 302 94 0 chr3 12575108 12575204 -214949374 - MIR SINE MIR -102 160 56 280 301 115 18 chr3 12575239 12575352 -214949226 - MIR SINE MIR -66 142 19 942 106 8 8 chr3 12575360 12575492 -214949086 - FLAM_C SINE Alu -1 132 1 23 33 0 0 chr3 12576091 12576121 -214948457 + AT_rich Low_complexity Low_complexity 1 30 0 271 239 0 37 chr3 12577564 12577673 -214946905 + CT-rich Low_complexity Low_complexity 4 108 0 476 269 94 29 chr3 12578672 12578843 -214945735 - L2 LINE L2 -4 3309 3128 2328 115 0 6 chr3 12579106 12579418 -214945160 - AluSq SINE Alu -3 310 1 1357 148 15 0 chr3 12579630 12579833 -214944745 - AluSq SINE Alu -10 303 98 1925 149 3 34 chr3 12580278 12580453 -214944125 - AluJb SINE Alu 0 312 150 2312 92 14 0 chr3 12580453 12580746 -214943832 - AluSx SINE Alu -14 298 2 1925 149 3 34 chr3 12580746 12580892 -214943686 - AluJb SINE Alu -162 150 1 1501 199 7 14 chr3 12580963 12581240 -214943338 - AluJb SINE Alu -37 275 1 2099 130 10 7 chr3 12581321 12581620 -214942958 + AluSq SINE Alu 1 300 -13 632 137 0 0 chr3 12582117 12582212 -214942366 - L1MC1 LINE L1 -17 6316 6222 189 132 0 0 chr3 12584474 12584512 -214940066 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr3 12585496 12585524 -214939054 + AT_rich Low_complexity Low_complexity 1 28 0 525 283 107 30 chr3 12586976 12587209 -214937369 + MIR SINE MIR 12 262 0 2393 85 7 0 chr3 12589017 12589323 -214935255 + AluSp SINE Alu 1 308 -5 252 0 0 0 chr3 12591572 12591600 -214932978 + (TG)n Simple_repeat Simple_repeat 2 29 0 2354 98 0 0 chr3 12591770 12592067 -214932511 + AluSx SINE Alu 1 297 -15 1219 185 19 9 chr3 12592765 12592981 -214931597 - MER20 DNA MER1_type 0 219 2 376 319 71 24 chr3 12594216 12594385 -214930193 - MIR3 SINE MIR -11 197 21 1419 178 29 25 chr3 12594983 12595258 -214929320 + AluJo SINE Alu 7 282 -30 26 0 0 0 chr3 12595400 12595426 -214929152 + AT_rich Low_complexity Low_complexity 1 26 0 2131 106 0 14 chr3 12596805 12597097 -214927481 + AluSg SINE Alu 1 288 -22 2131 114 7 7 chr3 12597831 12598128 -214926450 + AluSc SINE Alu 1 297 -12 1801 147 52 0 chr3 12598659 12598945 -214925633 + AluJb SINE Alu 2 302 -10 30 27 0 0 chr3 12599920 12599957 -214924621 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 12600015 12600038 -214924540 + (T)n Simple_repeat Simple_repeat 1 23 0 2338 87 3 0 chr3 12600056 12600356 -214924222 + AluY SINE Alu 2 302 -9 180 176 0 0 chr3 12600367 12600401 -214924177 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 12600567 12600853 -214923725 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 12600853 12600881 -214923697 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 12600909 12600956 -214923622 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 12601275 12601312 -214923266 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 12601502 12601625 -214922953 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 12601664 12601686 -214922892 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 12601694 12601987 -214922591 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 12602103 12602227 -214922351 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 12602227 12602551 -214922027 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 12602849 12603095 -214921483 + AluY SINE Alu 1 301 0 10994 96 6 12 chr3 12603410 12605005 -214919573 + L1P LINE L1 2119 3703 -2443 12159 97 9 32 chr3 12605109 12607019 -214917559 - L1P3 LINE L1 -4547 1914 51 480 305 106 4 chr3 12607309 12607440 -214917138 - MIR SINE MIR -2 260 144 2240 155 12 54 chr3 12607440 12607670 -214916908 - MLT1B LTR MaLR 0 390 183 2259 113 0 0 chr3 12607670 12607971 -214916607 - AluSx SINE Alu -11 301 1 2240 155 12 54 chr3 12607971 12608147 -214916431 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12608147 12608251 -214916327 - MIR SINE MIR -118 144 1 713 177 0 54 chr3 12608430 12608560 -214916018 + AluJo SINE Alu 38 160 -152 513 235 84 47 chr3 12608827 12609040 -214915538 + MIR SINE MIR 34 254 -8 507 184 11 132 chr3 12609267 12609441 -214915137 + MER5A DNA MER1_type 3 155 -34 231 88 0 0 chr3 12609578 12609612 -214914966 + (TG)n Simple_repeat Simple_repeat 2 35 0 1423 174 38 50 chr3 12610169 12610508 -214914070 + LTR37A LTR ERV1 92 426 0 2823 129 60 19 chr3 12610527 12610941 -214913637 + Charlie1 DNA MER1_type 1835 2273 -488 1992 120 3 19 chr3 12610941 12611249 -214913329 + AluSx SINE Alu 1 303 -9 2823 129 60 19 chr3 12611249 12611316 -214913262 + Charlie1 DNA MER1_type 2273 2336 -425 344 147 15 15 chr3 12611423 12611491 -214913087 - L1MB2 LINE L1 -98 6073 6006 2246 81 0 3 chr3 12611493 12611777 -214912801 + AluY SINE Alu 1 283 -28 441 0 0 0 chr3 12611777 12611826 -214912752 + (CA)n Simple_repeat Simple_repeat 2 50 0 617 231 20 7 chr3 12611826 12611973 -214912605 + MER39 LTR ERV1 540 688 -19 2122 136 0 0 chr3 12612042 12612336 -214912242 + AluSx SINE Alu 1 294 -18 459 365 23 23 chr3 12613389 12613649 -214910929 - MIR SINE MIR -2 260 1 1026 154 0 6 chr3 12614686 12614848 -214909730 + MLT1A2 LTR MaLR 1 161 -213 663 225 8 0 chr3 12614860 12614989 -214909589 + FLAM_C SINE Alu 3 132 -11 1264 185 5 14 chr3 12615004 12615226 -214909352 - AluJo SINE Alu -92 220 1 204 268 36 0 chr3 12615230 12615286 -214909292 - MIR SINE MIR -198 64 7 821 137 0 8 chr3 12615337 12615461 -214909117 - AluJo SINE Alu -178 134 12 2293 94 0 7 chr3 12615843 12616141 -214908437 - AluSx SINE Alu -16 296 1 563 358 46 43 chr3 12617027 12617351 -214907227 + L2 LINE L2 2933 3257 -15 2035 154 0 0 chr3 12617357 12617663 -214906915 + AluSx SINE Alu 1 306 -6 2250 121 0 0 chr3 12617668 12617998 -214906580 + AluSx SINE Alu 1 330 0 339 181 4 2 chr3 12618254 12618503 -214906075 + AluJo SINE Alu 1 298 -4 434 265 77 8 chr3 12619402 12619519 -214905059 - L2 LINE L2 -1 3312 3188 6268 100 20 0 chr3 12619565 12620610 -214903968 - L1PA7 LINE L1 0 6154 5143 718 239 56 0 chr3 12621243 12621423 -214903155 - MIR SINE MIR -59 203 14 2142 110 17 3 chr3 12621643 12621934 -214902644 + AluSg SINE Alu 1 295 -15 664 171 267 0 chr3 12622934 12623080 -214901498 - MER5A DNA MER1_type -4 185 1 321 148 0 0 chr3 12623528 12623582 -214900996 + Alu SINE Alu 249 302 0 445 261 43 9 chr3 12623795 12623910 -214900668 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 12624727 12624966 -214899612 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 12624966 12625387 -214899191 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 12625387 12625541 -214899037 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 12625641 12626098 -214898480 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 12626111 12626250 -214898328 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 12626316 12626682 -214897896 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 12626734 12626918 -214897660 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 12627113 12627454 -214897124 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 12627489 12628027 -214896551 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 12628035 12628186 -214896392 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 12628482 12628508 -214896070 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 12628549 12628977 -214895601 - MER57B LTR ERV1 0 434 1 12919 104 91 59 chr3 12628977 12629354 -214895224 - MER57B-int LTR ERV1 0 7537 7173 2421 68 0 3 chr3 12629354 12629649 -214894929 + AluY SINE Alu 1 294 -17 12919 104 91 59 chr3 12629649 12631433 -214893145 - MER57B-int LTR ERV1 -364 7173 5307 6014 131 57 29 chr3 12631424 12633086 -214891492 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 12633082 12633133 -214891445 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 12633109 12634624 -214889954 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 12634621 12635278 -214889300 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 12635278 12635704 -214888874 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 12635719 12635847 -214888731 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 12635900 12636039 -214888539 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 12636244 12636684 -214887894 + MLT1H LTR MaLR 3 555 0 181 0 0 0 chr3 12636797 12636817 -214887761 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2085 131 3 0 chr3 12636817 12637100 -214887478 - AluSx SINE Alu -1 303 1 22 0 0 0 chr3 12637787 12637809 -214886769 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 12638339 12638388 -214886190 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 12638513 12638606 -214885972 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 12638719 12638751 -214885827 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 12638838 12638895 -214885683 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 12639474 12639582 -214884996 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 12639652 12639714 -214884864 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 12639715 12639902 -214884676 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 12639903 12640144 -214884434 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 12640261 12640388 -214884190 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 12640405 12640534 -214884044 - MER5B DNA MER1_type 0 178 50 260 87 65 0 chr3 12640875 12640921 -214883657 + CT-rich Low_complexity Low_complexity 3 51 0 1542 201 7 0 chr3 12640921 12641195 -214883383 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 12641279 12641432 -214883146 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 12641478 12641567 -214883011 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 12641581 12641699 -214882879 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 12641704 12642031 -214882547 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 12642072 12642442 -214882136 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 12642805 12643208 -214881370 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 12643762 12643908 -214880670 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 12643931 12644048 -214880530 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 12644147 12644439 -214880139 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 12645569 12645928 -214878650 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 12646336 12646356 -214878222 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 934 102 0 0 chr3 12646361 12646479 -214878099 - AluSq/x SINE Alu -194 118 1 2229 121 0 0 chr3 12646749 12647056 -214877522 + AluSx SINE Alu 1 307 -5 227 305 62 23 chr3 12647127 12647255 -214877323 + L2 LINE L2 1889 2021 -1293 1456 160 95 0 chr3 12648362 12648625 -214875953 - AluJb SINE Alu -24 288 1 25 0 0 0 chr3 12648633 12648658 -214875920 + AT_rich Low_complexity Low_complexity 1 25 0 2154 116 0 13 chr3 12648721 12648852 -214875726 + AluSx SINE Alu 5 136 -176 2308 93 16 7 chr3 12648852 12649162 -214875416 + AluSq SINE Alu 1 313 0 2154 116 0 13 chr3 12649162 12649341 -214875237 + AluSx SINE Alu 136 311 -1 2413 75 0 7 chr3 12649433 12649725 -214874853 + AluSc SINE Alu 1 290 -19 242 250 69 0 chr3 12649737 12649809 -214874769 - L1ME LINE L1 -513 5608 5532 1422 176 55 24 chr3 12649887 12650177 -214874401 + AluJo SINE Alu 1 299 -13 2244 114 0 9 chr3 12650179 12650494 -214874084 + AluSx SINE Alu 1 312 0 1053 163 11 0 chr3 12650918 12651102 -214873476 - AluJo SINE Alu -6 306 121 1936 98 0 4 chr3 12651426 12651680 -214872898 - AluSq SINE Alu -7 306 54 718 89 0 0 chr3 12651680 12651770 -214872808 - AluS SINE Alu -221 91 2 889 196 31 0 chr3 12651840 12652003 -214872575 - AluJb SINE Alu -9 303 136 26 30 0 0 chr3 12652025 12652058 -214872520 + AT_rich Low_complexity Low_complexity 1 33 0 260 237 0 26 chr3 12652969 12653045 -214871533 + GA-rich Low_complexity Low_complexity 3 76 0 23 68 0 0 chr3 12654374 12654418 -214870160 + AT_rich Low_complexity Low_complexity 1 44 0 298 190 0 52 chr3 12654808 12654866 -214869712 - MIR SINE MIR -11 251 197 478 248 39 31 chr3 12654870 12654999 -214869579 - L2 LINE L2 -1 3312 3183 245 245 21 21 chr3 12655020 12655114 -214869464 + GA-rich Low_complexity Low_complexity 3 96 0 584 270 155 9 chr3 12655541 12655879 -214868699 - MLT1H LTR MaLR -15 534 122 238 304 43 0 chr3 12655985 12656077 -214868501 - MIR SINE MIR -66 196 101 1437 142 52 4 chr3 12656254 12656473 -214868105 + MER7A DNA MER2_type 1 228 -118 661 243 83 69 chr3 12656473 12656761 -214867817 + MER101B LTR ERV1 1 292 -278 258 206 40 103 chr3 12656808 12656934 -214867644 + MER101 LTR ERV1 328 445 -29 2309 110 0 0 chr3 12656949 12657250 -214867328 - AluSx SINE Alu -11 301 1 411 213 12 0 chr3 12657281 12657361 -214867217 + MER7A DNA MER2_type 257 337 0 507 264 153 32 chr3 12657361 12657577 -214867001 + MIR SINE MIR 15 256 -6 387 222 37 74 chr3 12658848 12659010 -214865568 + HAL1 LINE L1 2263 2418 -89 2473 62 0 10 chr3 12659071 12659379 -214865199 + AluY SINE Alu 1 305 -6 251 54 27 0 chr3 12659984 12660021 -214864557 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1072 181 51 0 chr3 12660684 12660861 -214863717 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 12660872 12661370 -214863208 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 12661386 12661428 -214863150 + (TG)n Simple_repeat Simple_repeat 1 42 0 256 282 113 0 chr3 12662041 12662165 -214862413 - MIR SINE MIR -15 247 110 702 270 32 10 chr3 12662167 12662446 -214862132 - LTR16B LTR ERVL -2 462 88 191 0 0 94 chr3 12662495 12662527 -214862051 + (T)n Simple_repeat Simple_repeat 1 29 0 7535 58 0 5 chr3 12662541 12663884 -214860694 - L1PA6 LINE L1 0 6154 4820 2097 134 0 3 chr3 12664110 12664408 -214860170 - AluJb SINE Alu -15 297 1 282 267 59 0 chr3 12664889 12664990 -214859588 - HAL1b LINE L1 -798 550 444 1896 178 0 3 chr3 12664997 12665290 -214859288 - AluJb SINE Alu -20 292 1 1407 137 4 26 chr3 12665290 12665523 -214859055 - MER2 DNA MER2_type -107 238 11 596 273 148 14 chr3 12666188 12666397 -214858181 + MIR SINE MIR 14 250 -12 2261 76 3 23 chr3 12666422 12666725 -214857853 - AluY SINE Alu -14 297 1 2258 117 0 3 chr3 12667368 12667668 -214856910 - AluSx SINE Alu -12 300 2 316 286 38 23 chr3 12668293 12668460 -214856118 - HAL1b LINE L1 -2 6119 1222 2205 115 0 0 chr3 12668491 12668779 -214855799 - AluSx SINE Alu -24 288 1 22 0 0 0 chr3 12670238 12670260 -214854318 + AT_rich Low_complexity Low_complexity 1 22 0 1570 216 92 24 chr3 12670927 12671298 -214853280 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 12671339 12671666 -214852912 + MLT2D LTR ERVL 1 323 -91 897 123 0 0 chr3 12671671 12671793 -214852785 + AluJb SINE Alu 14 135 -177 2185 109 7 0 chr3 12671793 12672087 -214852491 + AluSx SINE Alu 1 296 -16 1975 146 7 7 chr3 12672112 12672413 -214852165 + AluJo SINE Alu 1 301 -11 2153 134 3 7 chr3 12672551 12672857 -214851721 + AluSx SINE Alu 1 305 -7 2095 107 7 0 chr3 12672878 12673158 -214851420 + AluSx SINE Alu 11 292 -20 772 240 168 41 chr3 12674124 12674416 -214850162 + MER102a DNA MER1_type 2 330 0 216 325 68 34 chr3 12674515 12674632 -214849946 + L2 LINE L2 3188 3308 -5 300 281 48 68 chr3 12674655 12674801 -214849777 - MIR SINE MIR -95 167 25 286 315 164 25 chr3 12675355 12675758 -214848820 + L2 LINE L2 2191 2649 -665 1596 216 92 22 chr3 12676121 12676491 -214848087 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 12676532 12676859 -214847719 + MLT2D LTR ERVL 1 323 -91 801 144 0 8 chr3 12676864 12676982 -214847596 + FLAM_C SINE Alu 14 130 -13 392 157 135 22 chr3 12676996 12677085 -214847493 + MLT2D LTR ERVL 298 396 -1 211 327 78 65 chr3 12677131 12677284 -214847294 + L2 LINE L2 2826 2980 -292 1542 201 7 0 chr3 12677368 12677642 -214846936 + AluJo SINE Alu 1 276 -36 260 87 65 0 chr3 12677642 12677688 -214846890 + GA-rich Low_complexity Low_complexity 3 51 0 664 240 0 0 chr3 12678029 12678158 -214846420 + MER5B DNA MER1_type 50 178 0 724 173 0 8 chr3 12678175 12678302 -214846276 - MER5A DNA MER1_type -63 126 1 397 220 83 133 chr3 12678419 12678660 -214845918 + MER102a DNA MER1_type 3 231 -99 533 214 219 16 chr3 12678661 12678848 -214845730 + MLT1H LTR MaLR 325 549 0 291 194 16 0 chr3 12678849 12678911 -214845667 + MER102a DNA MER1_type 249 311 -19 342 250 93 9 chr3 12678981 12679089 -214845489 - MIR SINE MIR -82 180 64 230 140 53 0 chr3 12679668 12679725 -214844853 - L1MD3 LINE L1 0 7995 7936 32 0 0 0 chr3 12679812 12679844 -214844734 + AT_rich Low_complexity Low_complexity 1 32 0 190 301 118 11 chr3 12679957 12680050 -214844528 + L2 LINE L2 3162 3264 -8 228 184 0 0 chr3 12680175 12680224 -214844354 + GA-rich Low_complexity Low_complexity 2 50 0 22 0 0 0 chr3 12680754 12680776 -214843802 + AT_rich Low_complexity Low_complexity 1 22 0 2104 131 3 0 chr3 12681463 12681746 -214842832 + AluSx SINE Alu 1 284 -28 181 0 0 0 chr3 12681746 12681766 -214842812 + (TAA)n Simple_repeat Simple_repeat 2 180 0 578 244 128 47 chr3 12681879 12682319 -214842259 - MLT1H LTR MaLR 0 549 3 438 237 50 36 chr3 12682524 12682663 -214841915 + MIR SINE MIR 117 257 -5 379 266 0 39 chr3 12682716 12682844 -214841734 - L1ME4a LINE L1 -12 6109 5987 2891 124 19 0 chr3 12682859 12683285 -214841293 + MER57B LTR ERV1 1 434 0 4345 140 29 6 chr3 12683285 12683942 -214840636 + MER57B-int LTR ERV1 1 672 -6865 * 4769 146 59 21 chr3 12683939 12685481 -214839097 + PABL_A-int LTR ERV1 288 2220 -3726 * 5986 132 57 21 chr3 12685477 12687137 -214837441 + PABL_A-int LTR ERV1 2186 4041 -1702 * 12739 109 32 3 chr3 12687128 12688912 -214835666 + PABL_A-int LTR ERV1 5307 7143 -394 2279 86 3 0 chr3 12688912 12689204 -214835374 - AluSg SINE Alu -17 293 1 22 0 0 0 chr3 12689944 12689966 -214834612 + AT_rich Low_complexity Low_complexity 1 22 0 1259 166 107 45 chr3 12690702 12690992 -214833586 - AluJo SINE Alu -4 308 1 1036 147 16 27 chr3 12691007 12691191 -214833387 - AluJb SINE Alu -15 297 116 240 170 21 0 chr3 12691743 12691790 -214832788 - L1M2 LINE L1 -5088 1761 1714 398 176 162 29 chr3 12691923 12692059 -214832519 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 12692068 12692096 -214832482 + AT_rich Low_complexity Low_complexity 1 28 0 1681 86 0 26 chr3 12692613 12692845 -214831733 - AluSc SINE Alu -16 293 68 492 283 80 32 chr3 12693167 12693418 -214831160 - L2 LINE L2 -619 2695 2433 2497 62 0 10 chr3 12693823 12694131 -214830447 - AluY SINE Alu -6 305 1 422 237 34 62 chr3 12694191 12694368 -214830210 - HAL1 LINE L1 -89 2418 2247 1155 169 59 75 chr3 12695379 12695451 -214829127 - L1M4 LINE L1 -538 5636 5564 1997 161 14 30 chr3 12695451 12695812 -214828766 - THE1A LTR MaLR 0 355 1 1155 169 59 75 chr3 12695812 12696047 -214828531 - L1M4 LINE L1 -610 5564 5327 1796 183 3 7 chr3 12696047 12696347 -214828231 - AluJb SINE Alu -13 299 1 1155 169 59 75 chr3 12696347 12696412 -214828166 - L1M4 LINE L1 -847 5327 5263 3969 173 20 6 chr3 12696453 12697106 -214827472 + MER72 LTR ERV1 1 662 -60 2074 143 20 0 chr3 12697106 12697407 -214827171 - AluSx SINE Alu -5 307 1 2578 68 0 0 chr3 12697420 12697727 -214826851 - AluY SINE Alu -4 307 1 200 162 0 0 chr3 12698328 12698365 -214826213 - L2 LINE L2 -3 3310 3274 25 31 0 0 chr3 12699160 12699192 -214825386 + AT_rich Low_complexity Low_complexity 1 32 0 481 260 10 0 chr3 12699990 12700094 -214824484 + FLAM_C SINE Alu 7 111 -32 605 228 46 85 chr3 12700534 12700600 -214823978 - MLT1J LTR MaLR -5 506 439 1428 165 9 91 chr3 12700600 12700940 -214823638 + AluJo SINE Alu 1 312 0 605 228 46 85 chr3 12700940 12700980 -214823598 - MLT1J LTR MaLR -72 439 399 2402 49 0 7 chr3 12700980 12701298 -214823280 + AluY SINE Alu 1 316 0 605 228 46 85 chr3 12701298 12701470 -214823108 - MLT1J LTR MaLR -112 399 237 2326 97 0 3 chr3 12702184 12702484 -214822094 + AluSx SINE Alu 1 299 -13 869 163 44 12 chr3 12703031 12703191 -214821387 - AluJb SINE Alu -146 166 2 2213 68 64 20 chr3 12703244 12703540 -214821038 - AluY SINE Alu -2 309 1 2182 111 0 55 chr3 12703555 12703880 -214820698 - AluSg SINE Alu -1 309 3 2200 114 7 3 chr3 12703917 12704225 -214820353 - AluY SINE Alu -2 309 1 325 161 32 0 chr3 12704469 12704531 -214820047 + MLT1K LTR MaLR 508 571 -17 2100 119 19 10 chr3 12704623 12705118 -214819460 + AluSq SINE Alu 1 313 0 387 331 22 11 chr3 12705150 12705328 -214819250 + MIR SINE MIR 33 212 -50 848 217 61 35 chr3 12705700 12705783 -214818795 - MIR SINE MIR -21 241 162 1957 162 39 21 chr3 12705783 12706166 -214818412 + MLT1B LTR MaLR 1 390 0 848 217 61 35 chr3 12706166 12706312 -214818266 - MIR SINE MIR -100 162 6 1936 173 0 0 chr3 12707113 12707425 -214817153 + AluJo SINE Alu 1 312 0 400 331 66 36 chr3 12707849 12708154 -214816424 + HUERS-P1 LTR ERV1 5946 6259 -4 375 96 0 0 chr3 12708156 12708208 -214816370 + LTR26 LTR ERV1 1 52 -551 600 144 19 0 chr3 12708332 12708436 -214816142 - L1M4 LINE L1 -1366 4780 4675 968 188 6 0 chr3 12708436 12708606 -214815972 - MLT1F1 LTR MaLR -392 175 5 1495 278 94 10 chr3 12708610 12709219 -214815359 - L1MC4a LINE L1 -1889 5919 5260 1459 144 8 27 chr3 12709852 12710115 -214814463 + AluSx SINE Alu 28 285 -27 210 292 0 0 chr3 12710322 12710370 -214814208 + polypyrimidine Low_complexity Low_complexity 4 51 0 1149 144 5 51 chr3 12710856 12710991 -214813587 + AluJb SINE Alu 1 126 -186 2015 68 114 11 chr3 12710991 12711272 -214813306 + AluY SINE Alu 1 310 -1 1149 144 5 51 chr3 12711272 12711331 -214813247 + AluJb SINE Alu 126 186 -126 201 162 0 0 chr3 12711549 12711586 -214812992 + A-rich Low_complexity Low_complexity 1 37 0 255 31 0 0 chr3 12711729 12711761 -214812817 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 234 150 0 0 chr3 12712072 12712112 -214812466 + (A)n Simple_repeat Simple_repeat 1 40 0 209 203 34 34 chr3 12712953 12713012 -214811566 + G-rich Low_complexity Low_complexity 3 61 0 286 198 40 28 chr3 12713015 12713270 -214811308 + GA-rich Low_complexity Low_complexity 1 258 0 1109 190 19 9 chr3 12714407 12714623 -214809955 + MER20 DNA MER1_type 2 219 0 8142 51 57 1 chr3 12715273 12716295 -214808283 + SVA Other Other 330 1406 0 817 163 80 21 chr3 12716312 12716510 -214808068 - L1ME LINE L1 -723 5443 5236 677 103 62 0 chr3 12716513 12716631 -214807947 - LTR49 LTR ERV1 -3 592 486 616 190 10 0 chr3 12716637 12716737 -214807841 + LTR49-int LTR ERV1 1 101 -6230 2112 134 0 7 chr3 12716738 12717043 -214807535 - AluSx SINE Alu -9 303 1 406 255 6 56 chr3 12717406 12717435 -214807143 + MIR SINE MIR 12 41 -221 1910 163 0 3 chr3 12717435 12717730 -214806848 + AluJo SINE Alu 4 297 -15 406 255 6 56 chr3 12717730 12717861 -214806717 + MIR SINE MIR 41 164 -98 301 218 150 54 chr3 12718025 12718172 -214806406 - MIR3 SINE MIR -12 196 36 230 288 123 0 chr3 12718194 12718267 -214806311 - L2 LINE L2 -3 3310 3229 2337 94 0 3 chr3 12718396 12718693 -214805885 - AluSx SINE Alu -16 296 1 1084 214 23 9 chr3 12718791 12718965 -214805613 - AluJo SINE Alu -5 307 128 258 32 0 0 chr3 12718965 12718996 -214805582 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1084 214 23 9 chr3 12718996 12719041 -214805537 - AluJo SINE Alu -184 128 85 393 138 17 0 chr3 12719041 12719099 -214805479 - AluSx SINE Alu -52 248 190 679 74 11 11 chr3 12719100 12719195 -214805383 - AluSx SINE Alu -174 138 44 667 167 32 8 chr3 12719198 12719324 -214805254 - AluJo/FLAM SINE Alu -172 130 2 26 64 0 0 chr3 12720033 12720080 -214804498 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr3 12720108 12720142 -214804436 + AT_rich Low_complexity Low_complexity 1 34 0 1103 222 64 53 chr3 12721450 12721749 -214802829 - L1M4 LINE L1 -1898 4248 3943 2340 89 0 13 chr3 12721749 12722053 -214802525 - AluSc SINE Alu -9 300 1 1103 222 64 53 chr3 12722053 12722113 -214802465 - L1M4 LINE L1 -2203 3943 3885 1100 225 99 48 chr3 12722113 12722581 -214801997 - LTR8A LTR ERV1 0 727 117 1772 150 21 0 chr3 12723578 12723858 -214800720 + AluJo SINE Alu 1 286 -26 2199 107 0 10 chr3 12723884 12724173 -214800405 + AluSx SINE Alu 1 286 -26 239 83 83 48 chr3 12724482 12724566 -214800012 + (TTGTG)n Simple_repeat Simple_repeat 2 88 0 2097 123 0 7 chr3 12724898 12725225 -214799353 - AluJb SINE Alu 0 312 1 626 262 22 22 chr3 12725232 12725415 -214799163 + MIR SINE MIR 29 211 -51 1560 260 135 39 chr3 12725762 12726296 -214798282 + MLT1K LTR MaLR 4 588 0 2346 87 0 13 chr3 12726533 12726833 -214797745 + AluSq SINE Alu 1 296 -17 2369 145 15 3 chr3 12727146 12727278 -214797300 + L1P5 LINE L1 5012 5141 -1013 2038 119 0 14 chr3 12727278 12727588 -214796990 + AluSx SINE Alu 1 306 0 2369 145 15 3 chr3 12727588 12728028 -214796550 + L1P5 LINE L1 5141 5590 -564 1969 131 3 10 chr3 12728045 12728342 -214796236 - AluSx SINE Alu -17 295 1 264 81 0 0 chr3 12728342 12728379 -214796199 + MLT1F1 LTR MaLR 530 566 -1 25 31 0 0 chr3 12728592 12728624 -214795954 + AT_rich Low_complexity Low_complexity 1 32 0 2076 130 3 0 chr3 12728663 12728978 -214795600 + AluSx SINE Alu 1 312 0 584 249 64 118 chr3 12729098 12729411 -214795167 + L2 LINE L2 2966 3261 -11 282 303 13 34 chr3 12729422 12729581 -214794997 + GA-rich Low_complexity Low_complexity 1 155 0 183 194 0 0 chr3 12730583 12730619 -214793959 + MIR SINE MIR 109 144 -118 934 187 0 0 chr3 12730738 12730893 -214793685 + FRAM SINE Alu 1 155 -11 189 0 0 0 chr3 12730921 12730942 -214793636 + (A)n Simple_repeat Simple_repeat 1 21 0 211 275 46 46 chr3 12731305 12731414 -214793164 - MIR3 SINE MIR -10 198 90 442 204 34 109 chr3 12731463 12731610 -214792968 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 12731996 12732027 -214792551 + (TC)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr3 12732029 12732054 -214792524 + (CA)n Simple_repeat Simple_repeat 1 25 0 652 266 91 36 chr3 12732065 12732339 -214792239 + MLT1K LTR MaLR 138 426 -162 2194 112 3 0 chr3 12732339 12732634 -214791944 + AluSx SINE Alu 1 296 -16 2129 98 4 4 chr3 12732764 12733039 -214791539 + AluSx SINE Alu 14 288 -24 266 119 0 24 chr3 12733057 12733099 -214791479 + Tigger1 DNA MER2_type 1579 1619 -799 828 229 0 0 chr3 12733396 12733540 -214791038 + FRAM SINE Alu 9 152 -24 4738 137 37 18 chr3 12733718 12734537 -214790041 - L1MB4 LINE L1 -10 6170 5337 2133 103 31 0 chr3 12734539 12734829 -214789749 + AluSx SINE Alu 1 299 -13 1746 218 8 8 chr3 12734853 12735243 -214789335 - L1MB4 LINE L1 -940 5206 4817 1157 127 12 0 chr3 12735245 12735411 -214789167 - AluSg/x SINE Alu -14 296 129 681 198 41 8 chr3 12735566 12735687 -214788891 - FLAM_C SINE Alu -17 126 2 2568 212 26 46 chr3 12735879 12736529 -214788049 - L1ME1 LINE L1 -5 6161 5525 504 262 116 39 chr3 12737369 12737602 -214786976 + MIR SINE MIR 12 262 0 2320 99 7 0 chr3 12739411 12739715 -214784863 + AluSx SINE Alu 1 306 -6 586 288 101 10 chr3 12739715 12739913 -214784665 + MIR SINE MIR 47 262 0 445 307 163 34 chr3 12739971 12740770 -214783808 - L2 LINE L2 -425 2889 1988 246 227 194 34 chr3 12741115 12741299 -214783279 - L2 LINE L2 -340 2932 2725 1146 121 10 66 chr3 12741303 12741501 -214783077 - AluJo SINE Alu -14 298 112 248 154 11 149 chr3 12741624 12741799 -214782779 - AluJo SINE Alu -147 155 5 459 280 48 11 chr3 12741803 12741992 -214782586 - L2 LINE L2 -593 2721 2526 482 249 23 81 chr3 12742160 12742251 -214782327 + MIR SINE MIR 81 159 -103 2315 95 0 0 chr3 12742251 12742546 -214782032 - AluY SINE Alu -16 295 1 482 249 23 81 chr3 12742546 12742627 -214781951 + MIR SINE MIR 159 243 -19 2087 119 0 7 chr3 12742634 12742962 -214781616 - AluSx SINE Alu 0 326 1 1960 154 77 100 chr3 12742964 12743432 -214781146 + LTR49-int LTR ERV1 734 1190 -5141 339 257 0 14 chr3 12743459 12743529 -214781049 + tRNA-Glu-GAG tRNA tRNA 7 75 0 550 115 67 5 chr3 12743583 12743687 -214780891 + LTR49-int LTR ERV1 1290 1934 -2946 2231 98 11 0 chr3 12743782 12744069 -214780509 + AluY SINE Alu 10 299 -12 3778 158 16 52 chr3 12744103 12744386 -214780192 + LTR49-int LTR ERV1 1372 1663 -4668 2248 90 0 7 chr3 12744386 12744674 -214779904 + AluSg1 SINE Alu 5 290 -19 3778 158 16 52 chr3 12744674 12745125 -214779453 + LTR49-int LTR ERV1 1663 2080 -4251 2860 197 18 42 chr3 12745130 12745748 -214778830 - LTR26 LTR ERV1 0 603 1 1453 178 7 7 chr3 12745955 12746236 -214778342 + AluSg SINE Alu 10 290 -20 1592 335 38 46 chr3 12746577 12746612 -214777966 - MER66-int LTR ERV1 -2813 4309 4275 1805 188 0 0 chr3 12746612 12746905 -214777673 + AluJo SINE Alu 3 295 -17 1592 335 38 46 chr3 12746905 12747987 -214776591 - MER66-int LTR ERV1 -2847 4275 3201 490 352 18 26 chr3 12748054 12748327 -214776251 - MER66-int LTR ERV1 -4020 3102 2832 429 100 0 0 chr3 12748399 12748459 -214776119 + Alu SINE Alu 249 308 -4 760 339 47 50 chr3 12748526 12749167 -214775411 - MER66-int LTR ERV1 -5568 1554 916 357 277 11 0 chr3 12749350 12749444 -214775134 - MER66-int LTR ERV1 -5067 1609 1515 693 237 23 92 chr3 12749783 12750045 -214774533 - MER66-int LTR ERV1 -5462 801 558 2019 61 0 8 chr3 12750224 12750471 -214774107 + AluY SINE Alu 1 245 -66 540 214 71 57 chr3 12750642 12750911 -214773667 - LTR48B LTR ERV1 -21 732 382 271 167 45 15 chr3 12750974 12751040 -214773538 - LTR48B LTR ERV1 -449 195 128 261 274 104 19 chr3 12751012 12751118 -214773460 - MER39 LTR ERV1 -582 125 11 * 1107 170 131 0 chr3 12751151 12751357 -214773221 - MER34C LTR ERV1 -352 233 1 2314 181 14 0 chr3 12751359 12751785 -214772793 + L1MB7 LINE L1 5752 6183 -1 1921 112 7 4 chr3 12751804 12752073 -214772505 + AluSp SINE Alu 11 280 -33 345 132 38 0 chr3 12752097 12752150 -214772428 + LTR49 LTR ERV1 535 589 -6 1377 197 19 104 chr3 12752152 12752205 -214772373 - L1M4 LINE L1 -904 5242 5186 2428 66 7 3 chr3 12752205 12752506 -214772072 - AluY SINE Alu -9 302 1 1377 197 19 104 chr3 12752506 12752603 -214771975 - L1M4 LINE L1 -960 5186 5082 1899 159 10 16 chr3 12752603 12752917 -214771661 - AluJo SINE Alu 0 312 1 1377 197 19 104 chr3 12752917 12753197 -214771381 - L1M4 LINE L1 -1064 5082 4848 794 216 13 0 chr3 12753184 12753337 -214771241 + L1ME LINE L1 5425 5579 -587 * 1864 176 6 6 chr3 12753337 12753649 -214770929 + AluJb SINE Alu 1 312 0 2209 132 57 75 chr3 12753731 12754169 -214770409 + LTR2B LTR ERV1 1 430 -60 30 27 0 0 chr3 12755103 12755140 -214769438 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 12755198 12755221 -214769357 + (T)n Simple_repeat Simple_repeat 1 23 0 2504 46 0 36 chr3 12755239 12755545 -214769033 + AluY SINE Alu 2 296 -15 292 300 85 2 chr3 12755801 12756044 -214768534 + L1MDa LINE L1 2444 2715 -3825 580 223 12 54 chr3 12756460 12756626 -214767952 - L1ME2 LINE L1 -10 6154 5996 564 274 17 58 chr3 12756614 12756784 -214767794 + L1MDa LINE L1 2918 3073 -3467 * 1638 173 0 64 chr3 12756784 12757113 -214767465 - AluJo SINE Alu -4 308 1 564 274 17 58 chr3 12757113 12757234 -214767344 + L1MDa LINE L1 3073 3197 -3343 1091 170 0 11 chr3 12757519 12757701 -214766877 + AluJb SINE Alu 122 301 -11 23 0 0 0 chr3 12757716 12757739 -214766839 + AT_rich Low_complexity Low_complexity 1 23 0 201 266 31 62 chr3 12757796 12757860 -214766718 - MIR SINE MIR -62 146 85 368 256 115 39 chr3 12757901 12758057 -214766521 + L2 LINE L2 3136 3303 -10 328 134 119 15 chr3 12758081 12758148 -214766430 - MLT1B LTR MaLR 0 390 317 1137 125 11 11 chr3 12758155 12758331 -214766247 - AluY SINE Alu 0 311 136 527 91 91 11 chr3 12758331 12758419 -214766159 - MLT1B LTR MaLR -58 332 238 920 141 0 15 chr3 12758682 12758817 -214765761 + FLAM_A SINE Alu 1 133 0 408 71 0 0 chr3 12758965 12759021 -214765557 + (TC)n Simple_repeat Simple_repeat 1 56 0 801 165 0 0 chr3 12759214 12759335 -214765243 + FLAM_C SINE Alu 1 121 -22 2410 60 0 10 chr3 12759345 12759643 -214764935 + AluY SINE Alu 1 295 -16 974 186 11 11 chr3 12760273 12760461 -214764117 + L1PB4 LINE L1 5949 6136 -20 997 116 0 0 chr3 12760468 12760606 -214763972 - AluSg/x SINE Alu -10 300 163 2020 133 3 3 chr3 12760800 12761093 -214763485 - AluSc SINE Alu -12 297 5 21 36 0 0 chr3 12761187 12761215 -214763363 + AT_rich Low_complexity Low_complexity 1 28 0 182 136 23 0 chr3 12762937 12762981 -214761597 + (TG)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr3 12765175 12765204 -214759374 + AT_rich Low_complexity Low_complexity 1 29 0 373 299 85 24 chr3 12765587 12765751 -214758827 - MIR SINE MIR -33 229 56 1494 196 14 4 chr3 12765776 12766052 -214758526 - AluJb SINE Alu -33 279 1 331 235 71 10 chr3 12766625 12766723 -214757855 + MIR3 SINE MIR 105 208 0 225 0 0 0 chr3 12766966 12766991 -214757587 + (T)n Simple_repeat Simple_repeat 1 25 0 2353 92 0 10 chr3 12768643 12768957 -214755621 + AluSq SINE Alu 1 311 -2 300 53 0 0 chr3 12769459 12769497 -214755081 + (T)n Simple_repeat Simple_repeat 1 38 0 1592 73 0 10 chr3 12769508 12769713 -214754865 - AluSq SINE Alu -110 203 1 366 279 137 37 chr3 12770446 12770500 -214754078 + MIR SINE MIR 54 101 -161 2252 95 10 13 chr3 12770500 12770805 -214753773 + AluSx SINE Alu 1 304 -8 366 279 137 37 chr3 12770805 12770940 -214753638 + MIR SINE MIR 101 262 0 2304 106 0 10 chr3 12771000 12771303 -214753275 + AluSc SINE Alu 1 300 -9 180 176 0 0 chr3 12771314 12771348 -214753230 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 12771514 12771800 -214752778 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 12771800 12771828 -214752750 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 12771856 12771903 -214752675 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 12772222 12772259 -214752319 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 12772449 12772572 -214752006 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 12772611 12772633 -214751945 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 12772641 12772934 -214751644 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 12773050 12773174 -214751404 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 12773174 12773498 -214751080 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 12773796 12774042 -214750536 + AluY SINE Alu 1 300 0 25 31 0 0 chr3 12775148 12775180 -214749398 + AT_rich Low_complexity Low_complexity 1 32 0 238 267 322 0 chr3 12775922 12776012 -214748566 + L2 LINE L2 3151 3269 -3 2555 68 0 0 chr3 12776613 12776920 -214747658 + AluY SINE Alu 1 307 -4 941 102 71 0 chr3 12776933 12777060 -214747518 + AluSq/x SINE Alu 1 136 -177 328 307 51 22 chr3 12777100 12777237 -214747341 + MIR SINE MIR 109 249 -13 1770 171 9 19 chr3 12777314 12777629 -214746949 - AluSx SINE Alu 0 312 1 1924 139 0 0 chr3 12778161 12778460 -214746118 + AluSx SINE Alu 9 307 0 2642 55 0 0 chr3 12780314 12780622 -214743956 + AluY SINE Alu 1 308 -3 188 33 0 33 chr3 12780726 12780756 -214743822 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 12781050 12781340 -214743238 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 12781360 12781532 -214743046 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 12783095 12783130 -214741448 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 12785413 12785486 -214739092 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 12785497 12785675 -214738903 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 12786077 12786143 -214738435 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 12786542 12786631 -214737947 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 12786992 12787067 -214737511 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 12790756 12790786 -214733792 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 12791987 12792009 -214732569 + (T)n Simple_repeat Simple_repeat 1 22 0 1845 127 53 0 chr3 12793070 12793353 -214731225 - MER7A DNA MER2_type -48 298 3 304 306 57 49 chr3 12793381 12793450 -214731128 + HAL1b LINE L1 383 450 -898 2179 106 3 0 chr3 12793450 12793743 -214730835 + AluSg SINE Alu 1 294 -16 304 306 57 49 chr3 12793743 12793918 -214730660 + HAL1b LINE L1 450 629 -719 2193 105 3 10 chr3 12793919 12794225 -214730353 + AluSg1 SINE Alu 1 304 -5 188 33 0 33 chr3 12794330 12794360 -214730218 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 12794654 12794944 -214729634 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 12794964 12795136 -214729442 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 12796700 12796735 -214727843 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 12799018 12799091 -214725487 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 12799102 12799280 -214725298 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 12799682 12799748 -214724830 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 12800147 12800236 -214724342 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 12800596 12800671 -214723907 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 12804361 12804391 -214720187 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 12805593 12805615 -214718963 + (T)n Simple_repeat Simple_repeat 1 22 0 705 291 110 63 chr3 12806303 12806764 -214717814 - L2 LINE L2 -2 3311 2796 1168 153 65 92 chr3 12806764 12806859 -214717719 - MER58A DNA MER1_type -2196 224 128 2184 119 17 0 chr3 12806859 12807161 -214717417 + AluSx SINE Alu 1 307 -5 1168 153 65 92 chr3 12807161 12807294 -214717284 - MER58A DNA MER1_type -2292 128 2 705 291 110 63 chr3 12807294 12807617 -214716961 - L2 LINE L2 -517 2796 2489 2320 92 0 0 chr3 12807742 12808037 -214716541 + AluSg SINE Alu 1 295 -15 269 326 92 0 chr3 12808345 12808443 -214716135 - L2 LINE L2 -9 3263 3157 1044 121 221 11 chr3 12808509 12808699 -214715879 + MER30 DNA MER1_type 1 230 0 1322 146 219 12 chr3 12809215 12809461 -214715117 - AluJo SINE Alu -5 297 1 2293 36 88 0 chr3 12809846 12810120 -214714458 + AluY SINE Alu 1 298 -13 2060 117 3 52 chr3 12810781 12811089 -214713489 + AluSx SINE Alu 1 293 -19 1281 224 116 28 chr3 12811115 12811503 -214713075 + L1MC2 LINE L1 3957 4378 -1768 1046 165 0 0 chr3 12811503 12811661 -214712917 + FRAM SINE Alu 1 157 -19 2221 99 0 0 chr3 12811689 12812024 -214712554 + AluSx SINE Alu 1 335 0 2820 200 101 14 chr3 12812047 12812288 -214712290 + L1MC2 LINE L1 4404 4623 -1721 1918 166 7 0 chr3 12812288 12812584 -214711994 - AluSx SINE Alu -14 298 1 2820 200 101 14 chr3 12812584 12812820 -214711758 + L1MC2 LINE L1 4623 4837 -1507 351 0 0 0 chr3 12812820 12812859 -214711719 + (TG)n Simple_repeat Simple_repeat 2 40 0 2820 200 101 14 chr3 12812859 12813692 -214710886 + L1MC2 LINE L1 4837 5831 -513 1236 240 124 20 chr3 12813694 12814185 -214710393 + L1M1 LINE L1 3100 3641 -3924 718 112 37 67 chr3 12814201 12814335 -214710243 + L1M2 LINE L1 5665 5794 -518 508 91 0 80 chr3 12814335 12814423 -214710155 + L1MA9 LINE L1 5383 5463 -849 2454 154 47 55 chr3 12814513 12814873 -214709705 + L1MA9 LINE L1 5782 6138 -174 1925 149 3 13 chr3 12814873 12815175 -214709403 + AluJb SINE Alu 1 299 -13 2454 154 47 55 chr3 12815175 12815346 -214709232 + L1MA9 LINE L1 6138 6309 -3 3182 111 21 38 chr3 12815354 12815848 -214708730 + L1MC1 LINE L1 5818 6304 -29 2141 102 10 33 chr3 12815848 12816151 -214708427 + AluSx SINE Alu 5 300 -12 3182 111 21 38 chr3 12816151 12816178 -214708400 + L1MC1 LINE L1 6304 6330 -3 587 137 23 122 chr3 12816178 12816259 -214708319 + AluJo/FLAM SINE Alu 1 66 -236 2266 85 0 13 chr3 12816259 12816564 -214708014 - AluY SINE Alu -10 301 1 587 137 23 122 chr3 12816564 12816613 -214707965 + AluJo/FLAM SINE Alu 66 118 -184 24 0 0 0 chr3 12816613 12816637 -214707941 + AT_rich Low_complexity Low_complexity 1 24 0 629 318 92 25 chr3 12816639 12816774 -214707804 + HAL1b LINE L1 64 188 -1160 1634 166 17 10 chr3 12816774 12817069 -214707509 + AluSx SINE Alu 1 297 -15 629 318 92 25 chr3 12817069 12817216 -214707362 + HAL1b LINE L1 188 365 -983 1923 153 48 0 chr3 12817251 12817564 -214707014 - MER7A DNA MER2_type -18 328 3 274 306 57 49 chr3 12817592 12817661 -214706917 + HAL1b LINE L1 383 450 -898 2071 106 3 0 chr3 12817661 12817954 -214706624 + AluSg SINE Alu 1 294 -16 274 306 57 49 chr3 12817954 12818129 -214706449 + HAL1b LINE L1 450 629 -719 2241 92 3 0 chr3 12818130 12818436 -214706142 + AluSg1 SINE Alu 1 307 -2 1776 223 32 73 chr3 12818852 12819508 -214705070 + L1MC5 LINE L1 6732 7360 -601 1023 256 61 59 chr3 12819645 12820168 -214704410 + L1MC5 LINE L1 6962 7485 -476 475 135 292 0 chr3 12820212 12820308 -214704270 + FLAM_A SINE Alu 6 129 -13 1798 153 7 0 chr3 12820311 12820612 -214703966 + AluSx SINE Alu 1 303 -9 260 256 81 23 chr3 12820931 12821017 -214703561 + L2 LINE L2 3223 3313 0 191 336 130 40 chr3 12821363 12821572 -214703006 + L2 LINE L2 332 573 -2741 2086 116 17 0 chr3 12821572 12821874 -214702704 - AluSx SINE Alu -5 307 1 191 336 130 40 chr3 12821874 12821941 -214702637 + L2 LINE L2 573 633 -2681 839 327 151 42 chr3 12822332 12822384 -214702194 + L2 LINE L2 1301 1346 -1926 2173 88 13 28 chr3 12822384 12822701 -214701877 - AluSx SINE Alu 0 312 1 839 327 151 42 chr3 12822701 12823856 -214700722 + L2 LINE L2 1346 2374 -898 2355 147 18 61 chr3 12823856 12824241 -214700337 + MSTB LTR MaLR 1 401 -25 1783 142 17 26 chr3 12824241 12824378 -214700200 + AluJo SINE Alu 1 138 -174 2238 93 0 0 chr3 12824378 12824668 -214699910 + AluSc SINE Alu 1 290 -19 1783 142 17 26 chr3 12824668 12824832 -214699746 + AluJo SINE Alu 138 299 -13 2118 122 0 0 chr3 12824839 12825142 -214699436 + AluSx SINE Alu 1 303 -9 2355 147 18 61 chr3 12825142 12825191 -214699387 + MSTB LTR MaLR 407 424 -2 839 327 151 42 chr3 12825191 12825741 -214698837 + L2 LINE L2 2374 3266 -6 238 325 61 18 chr3 12825777 12825940 -214698638 - MIR SINE MIR -16 246 77 620 195 81 109 chr3 12826010 12826069 -214698509 + MLT1J LTR MaLR 5 64 -447 2203 104 0 0 chr3 12826069 12826368 -214698210 - AluSx SINE Alu -13 299 1 620 195 81 109 chr3 12826368 12826745 -214697833 + MLT1J LTR MaLR 64 500 -11 203 333 0 53 chr3 12828272 12828422 -214696156 + C-rich Low_complexity Low_complexity 3 144 0 225 297 0 25 chr3 12828448 12828566 -214696012 + CT-rich Low_complexity Low_complexity 2 116 0 206 292 0 66 chr3 12828524 12828661 -214695917 + C-rich Low_complexity Low_complexity 2 129 0 * 350 113 0 42 chr3 12829383 12829454 -214695124 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 12830757 12830788 -214693790 + (GA)n Simple_repeat Simple_repeat 2 32 0 2159 107 0 3 chr3 12830862 12831160 -214693418 + AluSq SINE Alu 1 297 -16 551 265 55 45 chr3 12831179 12831379 -214693199 + MIR SINE MIR 40 241 -21 664 155 43 17 chr3 12831449 12831565 -214693013 - FLAM_A SINE Alu -12 130 12 329 261 109 0 chr3 12831994 12832086 -214692492 + MIR SINE MIR 11 112 -150 1999 116 0 0 chr3 12832187 12832462 -214692116 + AluJo SINE Alu 2 276 -36 1892 137 0 23 chr3 12832531 12832838 -214691740 + AluSx SINE Alu 1 300 -12 2347 71 0 0 chr3 12832986 12833281 -214691297 + AluY SINE Alu 1 295 -16 387 297 139 46 chr3 12833314 12833681 -214690897 - L1ME3 LINE L1 -205 5957 5557 1904 136 3 37 chr3 12833699 12833886 -214690692 - AluJb SINE Alu 0 312 139 1966 64 114 4 chr3 12833886 12834166 -214690412 - AluY SINE Alu 0 311 1 1904 136 3 37 chr3 12834166 12834301 -214690277 - AluJb SINE Alu -173 139 1 210 292 0 0 chr3 12834783 12834831 -214689747 + polypurine Low_complexity Low_complexity 4 51 0 2045 116 3 0 chr3 12835029 12835322 -214689256 - AluSx SINE Alu -18 294 1 513 271 114 33 chr3 12835434 12835644 -214688934 + MIR SINE MIR 17 243 -19 233 336 115 9 chr3 12835627 12835718 -214688860 - L2 LINE L2 -7 3265 3163 735 229 91 13 chr3 12835718 12835963 -214688615 + MIR SINE MIR 1 261 -1 242 305 12 0 chr3 12836850 12836932 -214687646 - L2 LINE L2 -339 2974 2892 329 292 152 6 chr3 12836940 12837118 -214687460 - L2 LINE L2 -1035 2279 2076 297 306 10 0 chr3 12837605 12837703 -214686875 + CT-rich Low_complexity Low_complexity 2 100 0 210 360 0 0 chr3 12837797 12837872 -214686706 + CT-rich Low_complexity Low_complexity 2 76 0 282 278 139 50 chr3 12837874 12838054 -214686524 - L2 LINE L2 -1 3312 3117 180 229 83 21 chr3 12838309 12838357 -214686221 - MIR SINE MIR -95 167 117 605 253 104 20 chr3 12838453 12838614 -214685964 - MER20 DNA MER1_type 0 219 36 1537 174 53 7 chr3 12838614 12838895 -214685683 + AluJb SINE Alu 5 298 -4 605 253 104 20 chr3 12838895 12838935 -214685643 - MER20 DNA MER1_type -183 36 1 2162 95 0 0 chr3 12839098 12839424 -214685154 + AluSx SINE Alu 1 326 0 642 261 19 66 chr3 12839431 12839512 -214685066 - MIR SINE MIR -19 243 160 2202 95 0 0 chr3 12839512 12839807 -214684771 + AluY SINE Alu 1 295 -16 642 261 19 66 chr3 12839807 12839936 -214684642 - MIR SINE MIR -102 160 43 1392 203 44 3 chr3 12839939 12840260 -214684318 + MER113 DNA MER1_type? 79 412 -109 2262 64 7 0 chr3 12840377 12840672 -214683906 - AluY SINE Alu -14 297 1 382 283 9 53 chr3 12840678 12840791 -214683787 + MIR SINE MIR 85 192 -70 1001 251 55 98 chr3 12840962 12841384 -214683194 + MLT1J LTR MaLR 3 406 -105 2271 49 0 7 chr3 12841384 12841702 -214682876 - AluY SINE Alu 0 316 1 1001 251 55 98 chr3 12841702 12841736 -214682842 + MLT1J LTR MaLR 406 440 -71 210 71 0 0 chr3 12841742 12841770 -214682808 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1513 169 18 15 chr3 12841800 12842073 -214682505 - AluJo SINE Alu -38 274 1 294 172 0 17 chr3 12842081 12842139 -214682439 + MLT1J LTR MaLR 450 506 -5 182 200 0 0 chr3 12842198 12842233 -214682345 + MIR SINE MIR 79 113 -95 667 134 84 25 chr3 12842608 12842727 -214681851 + AluJo SINE Alu 9 134 -178 6539 168 30 33 chr3 12842774 12843813 -214680765 - L1MC1 LINE L1 0 6613 5572 1978 137 7 0 chr3 12843813 12844112 -214680466 - AluSx SINE Alu -11 301 1 6539 168 30 33 chr3 12844112 12844161 -214680417 - L1MC1 LINE L1 -1041 5572 5524 1919 133 20 0 chr3 12844161 12844455 -214680123 - AluSx SINE Alu -12 300 1 6539 168 30 33 chr3 12844455 12844913 -214679665 - L1MC1 LINE L1 -1089 5524 5066 2166 106 0 10 chr3 12844913 12845214 -214679364 - AluSx SINE Alu -14 298 1 1957 110 23 7 chr3 12845222 12845521 -214679057 - AluSq SINE Alu -9 304 1 6539 168 30 33 chr3 12845521 12845943 -214678635 - L1MC1 LINE L1 -1554 5059 4638 941 168 84 5 chr3 12845945 12846147 -214678431 + AluJo SINE Alu 85 302 -10 4280 231 32 19 chr3 12846152 12847188 -214677390 - L1MC1 LINE L1 -1793 4633 3612 1901 115 39 39 chr3 12847188 12847362 -214677216 - AluSx SINE Alu 0 312 139 267 31 0 0 chr3 12847362 12847394 -214677184 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1945 112 0 7 chr3 12847394 12847679 -214676899 - AluSq SINE Alu -30 283 1 1901 115 39 39 chr3 12847679 12847815 -214676763 - AluSx SINE Alu -171 141 1 4280 231 32 19 chr3 12847815 12847998 -214676580 - L1MC1 LINE L1 -2814 3612 3398 1254 196 32 4 chr3 12848000 12848250 -214676328 - AluJo SINE Alu -12 300 44 876 123 15 8 chr3 12848259 12848389 -214676189 - AluJb SINE Alu -171 141 11 915 202 0 0 chr3 12848396 12848614 -214675964 - L1MC1 LINE L1 -3006 3420 3203 554 225 0 39 chr3 12848618 12848747 -214675831 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 12848782 12848802 -214675776 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1855 128 29 4 chr3 12848804 12849085 -214675493 - AluSg SINE Alu -22 288 1 1875 249 58 3 chr3 12849090 12849657 -214674921 - L1MC1 LINE L1 -3234 3192 2595 994 162 23 0 chr3 12849659 12849832 -214674746 - AluJo/FRAM SINE Alu -2 310 134 2145 103 3 10 chr3 12849832 12850143 -214674435 - AluY SINE Alu -2 309 1 1617 150 80 12 chr3 12850143 12850585 -214673993 - L1MC1 LINE L1 -3947 2479 2140 356 200 16 49 chr3 12850650 12850835 -214673743 + C-rich Low_complexity Low_complexity 2 180 0 388 257 9 18 chr3 12850835 12850948 -214673630 + CT-rich Low_complexity Low_complexity 1 112 0 457 134 0 0 chr3 12851052 12851119 -214673459 - AluS SINE Alu -212 101 35 9064 135 39 42 chr3 12851121 12851583 -214672995 - L1MC1 LINE L1 -4493 1933 1471 192 97 0 0 chr3 12851583 12851614 -214672964 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9064 135 39 42 chr3 12851614 12852999 -214671579 - L1MC1 LINE L1 -4955 1471 1 247 222 0 0 chr3 12853170 12853215 -214671363 - MIR SINE MIR -31 231 187 2430 140 5 10 chr3 12853391 12853797 -214670781 + L1MB3 LINE L1 5779 6182 -1 1288 205 129 37 chr3 12853939 12854319 -214670259 + MLT1C LTR MaLR 1 415 -52 257 87 29 58 chr3 12854379 12854448 -214670130 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 812 165 0 8 chr3 12854669 12854802 -214669776 + AluJb SINE Alu 3 134 -178 1415 189 35 3 chr3 12854818 12855103 -214669475 + AluJb SINE Alu 5 298 -14 372 22 0 0 chr3 12855186 12855231 -214669347 + (CA)n Simple_repeat Simple_repeat 2 46 0 14249 102 44 85 chr3 12855232 12856008 -214668570 - Tigger1 DNA MER2_type -1 2417 1610 2131 104 3 0 chr3 12856008 12856295 -214668283 - AluSx SINE Alu -24 288 1 722 112 0 0 chr3 12856302 12856400 -214668178 - AluSg/x SINE Alu -16 294 197 14249 102 44 85 chr3 12856400 12856413 -214668165 - Tigger1 DNA MER2_type -814 1604 1592 2289 88 0 0 chr3 12856413 12856707 -214667871 - AluSg SINE Alu -16 294 1 14249 102 44 85 chr3 12856707 12857006 -214667572 - Tigger1 DNA MER2_type -826 1592 1282 2058 121 3 0 chr3 12857006 12857311 -214667267 - AluSg1 SINE Alu -3 306 1 14249 102 44 85 chr3 12857311 12858146 -214666432 - Tigger1 DNA MER2_type -1136 1282 509 840 150 0 15 chr3 12858146 12858279 -214666299 - FLAM_C SINE Alu -2 131 1 14249 102 44 85 chr3 12858279 12858768 -214665810 - Tigger1 DNA MER2_type -1909 509 1 200 182 0 0 chr3 12858848 12858881 -214665697 + GA-rich Low_complexity Low_complexity 3 35 0 1521 138 20 30 chr3 12858902 12859207 -214665371 + AluSx SINE Alu 1 302 -10 2218 169 51 5 chr3 12859639 12860048 -214664530 - MSTA LTR MaLR 0 428 1 1058 232 0 36 chr3 12860144 12860394 -214664184 + L1M3e LINE L1 1 241 -6789 705 327 9 0 chr3 13060788 13060999 -214463579 - MIR SINE MIR -12 250 38 312 229 46 76 chr3 13061029 13061160 -214463418 + MIR SINE MIR 64 190 -72 335 329 79 6 chr3 13062150 13062314 -214462264 + MIR SINE MIR 87 262 0 2216 73 19 32 chr3 13062746 13063060 -214461518 - AluSg SINE Alu 0 310 1 1021 204 0 4 chr3 13064195 13064426 -214460152 - AluY SINE Alu -81 230 1 1197 178 82 10 chr3 13064426 13064729 -214459849 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13064733 13064777 -214459801 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 13064788 13064918 -214459660 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13065056 13065098 -214459480 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2347 101 0 3 chr3 13065155 13065461 -214459117 - AluSg SINE Alu -3 307 3 2397 105 0 0 chr3 13065463 13065767 -214458811 - AluSx SINE Alu -6 306 3 790 155 0 0 chr3 13065798 13065927 -214458651 - FLAM_C SINE Alu 0 133 5 419 277 55 21 chr3 13065927 13066110 -214458468 - MIR SINE MIR -55 207 16 275 82 0 7 chr3 13066450 13066497 -214458081 - AluYa8 SINE Alu -106 194 156 774 210 0 89 chr3 13066997 13067087 -214457491 - MER3 DNA MER1_type -8 201 105 2064 87 23 65 chr3 13067087 13067396 -214457182 + AluSq SINE Alu 2 297 -16 774 210 0 89 chr3 13067396 13067519 -214457059 - MER3 DNA MER1_type -104 105 7 458 223 192 8 chr3 13068182 13068312 -214456266 - MER5A DNA MER1_type -6 183 30 450 326 67 5 chr3 13068347 13068540 -214456038 - MIR SINE MIR -38 224 20 421 259 184 14 chr3 13068708 13068855 -214455723 + MER5A DNA MER1_type 18 189 0 1926 137 16 19 chr3 13068866 13069179 -214455399 - AluSx SINE Alu 0 312 1 2199 115 3 7 chr3 13069773 13070068 -214454510 - AluSx SINE Alu -18 294 1 2022 146 0 0 chr3 13070070 13070351 -214454227 - AluSx SINE Alu -31 281 1 1342 211 73 35 chr3 13070760 13071129 -214453449 - L1MC4 LINE L1 -144 7898 7516 2475 80 0 6 chr3 13071138 13071449 -214453129 - AluY SINE Alu -2 309 1 542 303 118 26 chr3 13071468 13071815 -214452763 + L1MC/D LINE L1 5445 5823 -1985 2425 98 0 13 chr3 13071815 13072122 -214452456 + AluSx SINE Alu 1 303 -9 2517 59 0 0 chr3 13072123 13072412 -214452166 + AluY SINE Alu 2 290 -21 611 137 0 0 chr3 13073389 13073484 -214451094 + AluJo/FLAM SINE Alu 35 129 -183 2356 68 0 0 chr3 13073486 13073804 -214450774 + AluY SINE Alu 1 318 0 2387 76 14 0 chr3 13073856 13074147 -214450431 + AluY SINE Alu 1 295 -16 2471 83 3 10 chr3 13074327 13074639 -214449939 - AluSg SINE Alu 0 310 1 633 283 62 52 chr3 13075237 13075357 -214449221 - MER113 DNA MER1_type? -5 516 399 2557 93 0 0 chr3 13075357 13075669 -214448909 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 13075669 13075873 -214448705 - MER113 DNA MER1_type? -122 399 189 2142 130 0 0 chr3 13075873 13076165 -214448413 + AluSq SINE Alu 1 292 -21 463 304 120 14 chr3 13076579 13076796 -214447782 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 13076806 13076855 -214447723 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 13076855 13077152 -214447426 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 13077152 13077313 -214447265 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 13077609 13077634 -214446944 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 0 0 chr3 13077689 13078004 -214446574 - AluSc SINE Alu 0 315 1 1677 159 35 14 chr3 13078006 13078296 -214446282 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13078459 13078482 -214446096 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13079111 13079172 -214445406 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 13079215 13079351 -214445227 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 13079391 13079492 -214445086 - L2 LINE L2 0 3272 3158 2473 79 0 3 chr3 13079635 13079939 -214444639 - AluY SINE Alu -8 303 1 2188 110 0 3 chr3 13080195 13080487 -214444091 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 13080487 13080785 -214443793 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 13080796 13080938 -214443640 + L2 LINE L2 3171 3311 -2 220 376 24 0 chr3 13081042 13081167 -214443411 - L2 LINE L2 -470 2844 2717 2162 99 25 3 chr3 13081312 13081596 -214442982 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 13081604 13081905 -214442673 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 13081905 13082075 -214442503 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 13082075 13082090 -214442488 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 13082090 13082381 -214442197 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 13082381 13082420 -214442158 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 13082699 13082787 -214441791 - L2 LINE L2 -1077 2237 2146 464 194 20 0 chr3 13084317 13084415 -214440163 - MIR SINE MIR -32 230 131 574 293 0 7 chr3 13084444 13084591 -214439987 - MIR SINE MIR -106 156 11 393 312 130 9 chr3 13084752 13084967 -214439611 + MIR SINE MIR 2 242 -20 660 267 21 69 chr3 13085709 13085949 -214438629 + MIR SINE MIR 30 259 -3 247 336 80 8 chr3 13085964 13086089 -214438489 - L2 LINE L2 -1 3312 3179 214 246 46 31 chr3 13086472 13086537 -214438041 - L2 LINE L2 -250 3022 2957 2211 121 3 3 chr3 13087463 13087769 -214436809 + AluSx SINE Alu 1 306 -6 2024 132 0 7 chr3 13087774 13088055 -214436523 + AluSx SINE Alu 16 294 -18 2578 63 0 0 chr3 13088055 13088357 -214436221 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 13088662 13088816 -214435762 + L2 LINE L2 2944 3091 -181 424 257 118 0 chr3 13089774 13089918 -214434660 - L1ME3A LINE L1 -32 6138 5978 241 299 259 6 chr3 13089929 13090103 -214434475 - MIR SINE MIR -26 236 19 187 274 53 80 chr3 13090059 13090172 -214434406 + MIR SINE MIR 27 136 -72 * 540 284 83 61 chr3 13090235 13090360 -214434218 - MLT1J1 LTR MaLR -112 334 213 2531 71 0 10 chr3 13090360 13090669 -214433909 + AluY SINE Alu 1 306 -5 540 284 83 61 chr3 13090669 13090870 -214433708 - MLT1J1 LTR MaLR -233 213 1 191 286 0 0 chr3 13090874 13090923 -214433655 + L2 LINE L2 3213 3261 -11 258 303 53 75 chr3 13091453 13091704 -214432874 + L1ME4a LINE L1 5687 5931 -190 2352 109 3 0 chr3 13091704 13092016 -214432562 - AluSq SINE Alu 0 313 1 258 303 53 75 chr3 13092016 13092084 -214432494 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 13092108 13092139 -214432439 + AT_rich Low_complexity Low_complexity 1 31 0 230 267 50 75 chr3 13092658 13092778 -214431800 + MER5B DNA MER1_type 7 123 -55 2561 65 0 3 chr3 13092797 13093103 -214431475 - AluY SINE Alu -6 305 1 973 102 0 0 chr3 13093154 13093282 -214431296 + AluSp/q SINE Alu 176 303 -10 344 182 23 11 chr3 13093282 13093370 -214431208 - L1MB2 LINE L1 -36 6135 6047 247 280 10 0 chr3 13093395 13093495 -214431083 - L1MC4 LINE L1 -1 8041 7941 1300 102 0 0 chr3 13093792 13093958 -214430620 - AluSg/x SINE Alu -14 298 133 510 320 93 0 chr3 13094113 13094307 -214430271 - MIR SINE MIR 0 262 51 1938 147 19 10 chr3 13094461 13094768 -214429810 + AluJo SINE Alu 1 310 -2 234 347 75 0 chr3 13094800 13094947 -214429631 + MIR3 SINE MIR 40 197 -11 422 250 191 0 chr3 13095094 13095246 -214429332 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 13095262 13095302 -214429276 + (TG)n Simple_repeat Simple_repeat 2 41 0 700 175 8 0 chr3 13095315 13095435 -214429143 - FLAM_C SINE Alu -12 121 1 1742 168 35 3 chr3 13095457 13095742 -214428836 - AluJo SINE Alu -18 294 1 711 123 9 9 chr3 13095743 13095857 -214428721 - L1MC1 LINE L1 -9 6324 6211 364 309 80 55 chr3 13096781 13096934 -214427644 - MLT1L LTR MaLR -10 605 457 1162 33 26 0 chr3 13096934 13097086 -214427492 - L1PA5 LINE L1 0 6154 5999 364 309 80 55 chr3 13097086 13097362 -214427216 - MLT1L LTR MaLR -158 457 176 878 294 104 30 chr3 13097787 13098192 -214426386 + MLT1K LTR MaLR 144 578 -10 497 201 148 58 chr3 13098420 13098609 -214425969 - MIR SINE MIR -26 236 31 407 235 41 0 chr3 13098623 13098721 -214425857 + MER91C DNA MER1_type 39 140 0 252 369 76 0 chr3 13098991 13099148 -214425430 - MIR SINE MIR -14 248 80 2727 48 0 0 chr3 13099910 13100221 -214424357 + AluY SINE Alu 1 311 0 301 285 180 48 chr3 13100239 13100545 -214424033 - L2 LINE L2 -159 3113 2763 716 181 30 91 chr3 13100545 13100659 -214423919 + MER5A DNA MER1_type 1 99 -90 2336 95 7 0 chr3 13100659 13100954 -214423624 + AluSx SINE Alu 1 297 -15 716 181 30 91 chr3 13100954 13101038 -214423540 + MER5A DNA MER1_type 99 187 -2 301 285 180 48 chr3 13101038 13101079 -214423499 - L2 LINE L2 -509 2763 2729 2040 108 38 14 chr3 13101330 13101618 -214422960 - AluSx SINE Alu -4 308 14 578 314 33 17 chr3 13101646 13101934 -214422644 - L1ME LINE L1 -422 5699 5395 300 256 174 12 chr3 13101961 13102133 -214422445 - L1ME LINE L1 -801 5345 5146 2297 114 3 0 chr3 13102165 13102471 -214422107 - AluSx SINE Alu -5 307 1 1553 166 3 48 chr3 13102605 13102918 -214421660 + AluJb SINE Alu 13 312 0 2318 79 0 52 chr3 13103023 13103351 -214421227 - AluY SINE Alu 0 311 1 1943 131 0 0 chr3 13103353 13103612 -214420966 - AluSx SINE Alu -13 299 41 304 192 26 13 chr3 13103685 13103763 -214420815 + L1ME4a LINE L1 5946 6024 -97 238 228 38 25 chr3 13104212 13104291 -214420287 + MLT1K LTR MaLR 497 576 -12 2427 90 7 3 chr3 13104481 13104791 -214419787 + AluSx SINE Alu 1 311 -1 310 313 90 0 chr3 13105068 13105202 -214419376 - MIR SINE MIR -31 231 86 2126 139 13 3 chr3 13105274 13105624 -214418954 + AluJo SINE Alu 1 353 0 245 299 93 0 chr3 13106341 13106448 -214418130 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 13107638 13107702 -214416876 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 13108878 13108904 -214415674 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 13108967 13109058 -214415520 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 547 279 118 60 chr3 13109548 13110128 -214414450 - L2 LINE L2 -45 3227 2612 300 289 240 0 chr3 13110306 13110410 -214414168 - MER5A DNA MER1_type 0 189 61 252 247 68 14 chr3 13110423 13110496 -214414082 - MER5A DNA MER1_type -82 107 31 1310 217 173 8 chr3 13110528 13110892 -214413686 - MLT1K LTR MaLR -43 545 122 325 299 31 0 chr3 13111221 13111318 -214413260 + MIR SINE MIR 89 188 -74 2191 80 28 0 chr3 13111666 13111952 -214412626 - AluSx SINE Alu -14 298 5 269 261 15 0 chr3 13111975 13112040 -214412538 - MIR SINE MIR -85 123 58 1617 78 4 26 chr3 13112064 13112295 -214412283 + AluSp SINE Alu 88 313 0 2040 108 3 54 chr3 13112297 13112613 -214411965 + AluSp SINE Alu 2 301 -12 736 221 7 0 chr3 13112632 13112777 -214411801 - MIR SINE MIR -12 250 105 328 259 46 56 chr3 13112797 13112905 -214411673 - L2 LINE L2 -49 3223 3117 2111 120 0 0 chr3 13112913 13113204 -214411374 - AluSq SINE Alu -22 291 1 1021 152 11 43 chr3 13113485 13113669 -214410909 - FAM SINE Alu -7 42 1 228 266 16 0 chr3 13114055 13114119 -214410459 + MIR SINE MIR 79 143 -119 259 248 25 93 chr3 13114214 13114243 -214410335 - L1ME4a LINE L1 -1 6120 6091 1819 115 38 54 chr3 13114243 13114557 -214410021 + AluSq SINE Alu 1 309 -4 259 248 25 93 chr3 13114557 13114688 -214409890 - L1ME4a LINE L1 -30 6091 5971 189 438 0 0 chr3 13115450 13115530 -214409048 - L2 LINE L2 -82 3190 3111 234 303 73 18 chr3 13115604 13115670 -214408908 - L2 LINE L2 -212 3060 2984 2365 71 0 0 chr3 13115670 13115967 -214408611 + AluY SINE Alu 1 297 -14 234 303 73 18 chr3 13115967 13115981 -214408597 - L2 LINE L2 -288 2984 2974 203 184 0 161 chr3 13115981 13116068 -214408510 + MIR3 SINE MIR 3 75 -133 2106 111 0 19 chr3 13116144 13116460 -214408118 + AluSx SINE Alu 1 310 -2 2165 114 0 7 chr3 13116460 13116768 -214407810 + AluSx SINE Alu 1 306 -6 1061 130 0 30 chr3 13116768 13116937 -214407641 + AluSg/x SINE Alu 132 295 -15 737 287 50 0 chr3 13116961 13117025 -214407553 + MIR SINE MIR 17 76 -186 330 179 0 119 chr3 13117025 13117052 -214407526 - MER116 DNA Mariner -4 76 47 2117 93 0 13 chr3 13117052 13117352 -214407226 + AluSx SINE Alu 1 296 -16 330 179 0 119 chr3 13117352 13117408 -214407170 - MER116 DNA Mariner -33 47 3 737 287 50 0 chr3 13117408 13117545 -214407033 + MIR SINE MIR 76 228 -34 220 303 30 15 chr3 13117990 13118056 -214406522 + MER91A DNA MER1_type 130 196 0 412 215 42 40 chr3 13118577 13118616 -214405962 + MIR SINE MIR 42 79 -171 1790 123 76 4 chr3 13118616 13118893 -214405685 - AluSx SINE Alu -15 297 1 412 215 42 40 chr3 13118893 13119001 -214405577 + MIR SINE MIR 79 187 -63 863 136 0 50 chr3 13119069 13119209 -214405369 - FLAM_C SINE Alu 0 133 1 2336 75 0 0 chr3 13119239 13119534 -214405044 + AluY SINE Alu 1 295 -16 2415 61 0 0 chr3 13120468 13120764 -214403814 - AluY SINE Alu -15 296 1 317 340 10 0 chr3 13121036 13121136 -214403442 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 13121149 13121265 -214403313 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 330 349 15 0 chr3 13121326 13121458 -214403120 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 182 250 0 0 chr3 13123023 13123063 -214401515 + MIR SINE MIR 4 43 -219 245 264 0 0 chr3 13123459 13123512 -214401066 - L2 LINE L2 -11 3261 3209 2362 89 0 0 chr3 13123817 13124119 -214400459 + AluSx SINE Alu 1 302 -10 2334 76 0 10 chr3 13124159 13124463 -214400115 - AluSg SINE Alu -9 301 1 1120 166 0 0 chr3 13124621 13124796 -214399782 - AluSg/x SINE Alu -13 299 125 297 115 69 0 chr3 13124797 13124884 -214399694 + (TA)n Simple_repeat Simple_repeat 1 93 0 321 306 113 0 chr3 13125187 13125347 -214399231 + MIR SINE MIR 78 255 -7 744 200 0 0 chr3 13125557 13125722 -214398856 + CT-rich Low_complexity Low_complexity 4 168 0 2424 60 0 0 chr3 13125912 13126211 -214398367 + AluY SINE Alu 1 299 -12 1282 195 161 4 chr3 13126220 13126481 -214398097 + AluJo SINE Alu 1 302 0 2024 139 7 0 chr3 13126738 13127039 -214397539 + AluSx SINE Alu 3 305 -7 2102 117 3 10 chr3 13127039 13127346 -214397232 + AluSx SINE Alu 1 306 -6 233 240 58 58 chr3 13127396 13127500 -214397078 + MIR SINE MIR 86 189 -73 2149 111 7 0 chr3 13127812 13128119 -214396459 + AluSg SINE Alu 1 309 -1 235 283 58 50 chr3 13129628 13129748 -214394830 + MIR SINE MIR 7 127 -135 318 305 21 0 chr3 13129987 13130082 -214394496 - MIR SINE MIR -118 144 48 2084 105 0 7 chr3 13130617 13130913 -214393665 + AluSq SINE Alu 1 294 -19 1996 151 0 3 chr3 13130926 13131237 -214393341 + AluJo SINE Alu 1 310 -2 1829 180 7 0 chr3 13131288 13131594 -214392984 + AluJb SINE Alu 1 308 -4 258 116 0 0 chr3 13131595 13131638 -214392940 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2168 101 0 0 chr3 13131658 13131955 -214392623 + AluY SINE Alu 6 302 -9 2182 90 3 3 chr3 13132095 13132395 -214392183 + AluSp SINE Alu 14 313 0 221 319 111 63 chr3 13132636 13132794 -214391784 - MIR SINE MIR -70 192 29 291 200 17 0 chr3 13133271 13133331 -214391247 - MIR SINE MIR -60 148 88 735 191 0 0 chr3 13133375 13133490 -214391088 + FLAM_C SINE Alu 6 120 -23 207 88 0 0 chr3 13133490 13133524 -214391054 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 262 272 88 68 chr3 13133978 13134125 -214390453 + MIR SINE MIR 99 248 -14 225 94 0 0 chr3 13135457 13135489 -214389089 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 301 125 7 chr3 13135719 13135855 -214388723 + MIR SINE MIR 108 259 -3 259 302 19 19 chr3 13135996 13136102 -214388476 - L2 LINE L2 -220 3052 2947 2154 127 0 3 chr3 13136198 13136505 -214388073 + AluSx SINE Alu 1 306 -6 1928 124 29 33 chr3 13136518 13136825 -214387753 + AluSg SINE Alu 1 306 -4 776 42 0 0 chr3 13137905 13138000 -214386578 - AluY SINE Alu -1 310 216 2048 142 20 41 chr3 13138092 13138436 -214386142 + MER1B DNA MER1_type 1 337 0 742 199 88 0 chr3 13138856 13138992 -214385586 + FRAM SINE Alu 8 155 -21 251 317 14 115 chr3 13139154 13139237 -214385341 - MIR SINE MIR -56 206 116 2118 114 3 7 chr3 13139237 13139578 -214385000 + AluSx SINE Alu 1 312 0 251 317 14 115 chr3 13139578 13139702 -214384876 - MIR SINE MIR -146 116 20 825 285 76 3 chr3 13140212 13140500 -214384078 + MER102b DNA MER1_type 33 341 0 415 277 103 0 chr3 13141065 13141220 -214383358 + MER91A DNA MER1_type 20 190 -6 9645 53 14 3 chr3 13141957 13143196 -214381382 + SVA Other Other 135 1386 0 356 271 75 28 chr3 13143223 13143330 -214381248 - L1ME4a LINE L1 -272 5849 5738 423 0 0 0 chr3 13143340 13143387 -214381191 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1304 148 92 8 chr3 13143392 13143642 -214380936 - AluJo SINE Alu -32 280 10 2313 74 0 3 chr3 13143651 13143950 -214380628 - AluY SINE Alu -13 298 1 327 274 47 9 chr3 13144274 13144380 -214380198 - MIR SINE MIR -55 153 44 265 248 106 44 chr3 13144626 13144739 -214379839 - MIR3 SINE MIR -35 173 54 458 212 145 45 chr3 13145080 13145259 -214379319 + MIR SINE MIR 9 205 -57 3245 171 72 14 chr3 13145260 13145951 -214378627 + L1MB5 LINE L1 5435 6165 -9 337 237 0 41 chr3 13145955 13146066 -214378512 - L1MC4 LINE L1 -1339 6983 1996 224 218 55 0 chr3 13146085 13146140 -214378438 + L2 LINE L2 3186 3243 -29 302 279 19 19 chr3 13146172 13146276 -214378302 - MIR3 SINE MIR -22 186 83 365 196 0 72 chr3 13146305 13146402 -214378176 - MIR SINE MIR -70 192 103 1576 271 175 17 chr3 13146580 13147485 -214377093 + L2 LINE L2 2196 3245 -68 453 307 39 20 chr3 13147732 13147885 -214376693 - MIR SINE MIR -99 163 8 2120 71 0 14 chr3 13149998 13150278 -214374300 + AluY SINE Alu 1 276 -35 225 0 0 0 chr3 13150281 13150306 -214374272 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 439 250 125 7 chr3 13150385 13150521 -214374057 + MIR SINE MIR 89 240 -22 2216 90 0 3 chr3 13150723 13151023 -214373555 + AluSg1 SINE Alu 1 299 -10 297 0 0 0 chr3 13151024 13151057 -214373521 + (TA)n Simple_repeat Simple_repeat 2 34 0 473 245 198 40 chr3 13152929 13153182 -214371396 + L2 LINE L2 3020 3312 -1 2231 61 0 58 chr3 13153182 13153495 -214371083 - AluY SINE Alu -16 295 1 579 213 51 56 chr3 13153577 13153774 -214370804 - MIR SINE MIR 0 262 67 2127 109 0 26 chr3 13154565 13154869 -214369709 - AluSx SINE Alu -16 296 1 198 286 0 32 chr3 13154869 13154932 -214369646 - L2 LINE L2 -7 3265 3205 2199 116 0 0 chr3 13154947 13155248 -214369330 - AluSg SINE Alu -7 303 3 304 268 0 0 chr3 13155261 13155332 -214369246 - L2 LINE L2 -1 3271 3201 297 271 0 0 chr3 13155335 13155405 -214369173 - L2 LINE L2 0 3272 3203 251 257 0 43 chr3 13155409 13155479 -214369099 - L2 LINE L2 0 3272 3206 2327 91 3 0 chr3 13155606 13155914 -214368664 + AluSc SINE Alu 1 309 0 21 0 0 0 chr3 13156036 13156057 -214368521 + AT_rich Low_complexity Low_complexity 1 21 0 977 166 16 21 chr3 13156180 13156194 -214368384 + AluJb SINE Alu 120 133 -179 2279 101 7 0 chr3 13156194 13156502 -214368076 + AluSg SINE Alu 1 310 0 977 166 16 21 chr3 13156502 13156680 -214367898 + AluJb SINE Alu 133 311 -1 2203 103 0 0 chr3 13157110 13157410 -214367168 + AluY SINE Alu 1 300 -11 1705 158 3 14 chr3 13157427 13157719 -214366859 + AluJo SINE Alu 8 296 -16 772 185 51 6 chr3 13157771 13157928 -214366650 - MIR SINE MIR -78 184 21 2039 113 10 3 chr3 13158964 13159256 -214365322 - AluSx SINE Alu -18 294 1 486 141 0 0 chr3 13159319 13159404 -214365174 - AluS SINE Alu -1 311 227 1267 120 5 0 chr3 13160232 13160416 -214364162 - AluSx SINE Alu -127 185 1 198 0 0 0 chr3 13160420 13160442 -214364136 + (T)n Simple_repeat Simple_repeat 1 22 0 2354 94 0 0 chr3 13161691 13161977 -214362601 + AluSx SINE Alu 10 295 -17 548 278 57 44 chr3 13162639 13162866 -214361712 + MIR SINE MIR 33 262 0 285 240 184 22 chr3 13162914 13163017 -214361561 - MIR SINE MIR -94 114 44 4003 195 71 38 chr3 13163593 13163645 -214360933 + L1MB7 LINE L1 3925 3974 -2172 2140 132 0 10 chr3 13163645 13163780 -214360798 + AluSx SINE Alu 1 136 -176 2246 105 10 29 chr3 13163780 13164093 -214360485 + AluSq SINE Alu 1 307 -6 2140 132 0 10 chr3 13164093 13164261 -214360317 + AluSx SINE Alu 136 301 -11 4003 195 71 38 chr3 13164261 13164685 -214359893 + L1MB7 LINE L1 3974 4383 -1763 2302 106 0 0 chr3 13164685 13164977 -214359601 + AluSc SINE Alu 1 292 -17 4003 195 71 38 chr3 13164977 13165543 -214359035 + L1MB7 LINE L1 4383 5002 -1144 718 186 164 0 chr3 13165583 13165723 -214358855 + FRAM SINE Alu 1 157 -19 969 214 37 7 chr3 13165750 13166021 -214358557 + L1MB4 LINE L1 5902 6180 0 1893 99 3 128 chr3 13166031 13166375 -214358203 + AluSg1 SINE Alu 1 301 -8 2439 88 0 0 chr3 13166384 13166679 -214357899 + AluSg SINE Alu 1 295 -15 2726 179 74 59 chr3 13166680 13167397 -214357181 + L1MB7 LINE L1 5440 6167 -17 414 0 0 0 chr3 13167442 13167488 -214357090 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 279 206 118 15 chr3 13167489 13167557 -214357021 - FRAM SINE Alu -25 141 67 321 213 32 32 chr3 13168642 13168736 -214355842 + MIR SINE MIR 50 143 -119 394 234 140 9 chr3 13169512 13169619 -214354959 - MIR SINE MIR -96 166 46 2321 110 0 0 chr3 13169700 13169990 -214354588 + AluSx SINE Alu 1 290 -22 254 280 47 19 chr3 13170116 13170223 -214354355 - L2 LINE L2 -508 2806 2697 1055 163 28 0 chr3 13171995 13172173 -214352405 + AluJb SINE Alu 120 302 -10 185 256 0 0 chr3 13172216 13172259 -214352319 - MER5B DNA MER1_type -135 43 1 371 256 234 0 chr3 13172292 13172429 -214352149 - MIR SINE MIR 0 262 94 1937 87 3 130 chr3 13174369 13174714 -214349864 + AluSg1 SINE Alu 1 301 -8 2439 88 0 0 chr3 13174723 13175018 -214349560 + AluSg SINE Alu 1 295 -15 2726 179 74 59 chr3 13175019 13175736 -214348842 + L1MB7 LINE L1 5440 6167 -17 486 0 0 0 chr3 13175781 13175835 -214348743 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1655 156 0 50 chr3 13175836 13176119 -214348459 - AluJo SINE Alu -35 277 9 532 254 67 6 chr3 13176130 13176295 -214348283 - AluJo SINE Alu -1 311 137 493 293 28 83 chr3 13176743 13176996 -214347582 + MIR SINE MIR 16 254 -8 2257 101 0 14 chr3 13177476 13177773 -214346805 + AluSg1 SINE Alu 1 293 -16 219 36 0 0 chr3 13177773 13177801 -214346777 + (TA)n Simple_repeat Simple_repeat 2 29 0 843 150 0 0 chr3 13178724 13178857 -214345721 - AluJo SINE Alu -169 133 1 1794 79 0 0 chr3 13179371 13179586 -214344992 + AluSq SINE Alu 83 297 -16 1237 107 122 0 chr3 13179860 13180065 -214344513 + MER30 DNA MER1_type 1 230 0 465 260 80 0 chr3 13180258 13180408 -214344170 - MLT1K LTR MaLR -8 580 419 1741 83 0 9 chr3 13180905 13181133 -214343445 + AluY SINE Alu 80 305 -6 386 358 43 47 chr3 13181136 13181390 -214343188 - L2 LINE L2 -144 3128 2876 303 232 0 12 chr3 13181404 13181486 -214343092 + L1MB8 LINE L1 6089 6169 -9 280 333 54 0 chr3 13181687 13181816 -214342762 + MIR3 SINE MIR 2 137 -71 600 136 18 36 chr3 13181822 13181932 -214342646 + L1MB8 LINE L1 5562 5669 -509 2459 90 0 0 chr3 13181934 13182234 -214342344 + AluSg SINE Alu 1 300 -10 1077 117 0 60 chr3 13182244 13182480 -214342098 + AluSc SINE Alu 1 309 0 708 156 117 7 chr3 13182482 13182636 -214341942 + L1MB8 LINE L1 5661 5831 -347 1860 160 14 10 chr3 13182636 13182930 -214341648 + AluJo SINE Alu 1 295 -17 1726 176 20 16 chr3 13182932 13183238 -214341340 + AluJb SINE Alu 1 307 -5 2420 91 0 0 chr3 13183262 13183559 -214341019 - AluSx SINE Alu -15 297 1 565 284 43 34 chr3 13183621 13183973 -214340605 - L1MC5 LINE L1 -179 7782 7428 586 249 147 62 chr3 13184037 13184459 -214340119 + HAL1 LINE L1 1978 2435 -72 2205 127 0 0 chr3 13184509 13184808 -214339770 + AluSx SINE Alu 1 299 -13 1031 114 0 0 chr3 13185354 13185486 -214339092 + AluSq/x SINE Alu 1 132 -180 460 287 174 0 chr3 13185507 13185702 -214338876 + MIR SINE MIR 20 248 -14 692 295 189 19 chr3 13186331 13186813 -214337765 + L3 LINE CR1 723 1286 -291 1721 149 3 57 chr3 13187027 13187343 -214337235 - AluJo SINE Alu -1 311 13 207 0 0 0 chr3 13187359 13187382 -214337196 + (TTC)n Simple_repeat Simple_repeat 2 24 0 309 86 69 0 chr3 13187384 13187442 -214337136 - AluJb SINE Alu 0 302 241 1298 169 31 63 chr3 13187509 13187763 -214336815 - AluJb SINE Alu -66 246 1 331 257 81 62 chr3 13188020 13188208 -214336370 + L1MC4a LINE L1 5719 5917 -204 2135 69 87 0 chr3 13188208 13188483 -214336095 + AluSx SINE Alu 1 299 -13 331 257 81 62 chr3 13188483 13188566 -214336012 + L1MC4a LINE L1 5917 5997 -124 401 236 0 0 chr3 13188600 13188689 -214335889 + L3 LINE CR1 1423 1511 -66 758 148 31 0 chr3 13189663 13189791 -214334787 + FLAM_C SINE Alu 2 133 0 1397 203 23 36 chr3 13189799 13189930 -214334648 + AluJo SINE Alu 7 138 -174 189 0 0 0 chr3 13189930 13189951 -214334627 + (CA)n Simple_repeat Simple_repeat 2 22 0 1397 203 23 36 chr3 13189951 13190120 -214334458 + AluJo SINE Alu 138 303 -9 208 233 50 17 chr3 13190120 13190180 -214334398 + MIR SINE MIR 105 166 -96 1884 113 4 4 chr3 13191287 13191543 -214333035 + AluSg SINE Alu 38 293 -17 2267 112 0 0 chr3 13191552 13191847 -214332731 + AluSx SINE Alu 1 295 -17 402 292 15 8 chr3 13192534 13192664 -214331914 + MIR3 SINE MIR 71 201 -7 793 213 109 10 chr3 13192710 13193050 -214331528 - MLT1J2 LTR MaLR -19 427 1 440 281 134 6 chr3 13193454 13193618 -214330960 + MIR SINE MIR 19 203 -59 1927 119 8 4 chr3 13193649 13193917 -214330661 + AluJb SINE Alu 21 289 -23 341 241 181 23 chr3 13193954 13194087 -214330491 - L1MC4 LINE L1 -642 7400 7247 1696 168 18 18 chr3 13194102 13194425 -214330153 - AluJo SINE Alu 0 323 1 204 40 0 0 chr3 13194425 13194450 -214330128 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1033 182 166 11 chr3 13194501 13194777 -214329801 - L1MC4 LINE L1 -884 6901 6639 186 327 144 0 chr3 13194870 13194974 -214329604 - MIR SINE MIR -25 237 119 2410 56 3 43 chr3 13195024 13195329 -214329249 - AluY SINE Alu -18 293 1 540 193 107 7 chr3 13195413 13195596 -214328982 + L1M4 LINE L1 4981 5185 -961 939 154 46 36 chr3 13195605 13195662 -214328916 + L1MB7 LINE L1 5107 5162 -1012 2189 117 0 3 chr3 13195662 13195953 -214328625 - AluSx SINE Alu -22 290 1 939 154 46 36 chr3 13195953 13196184 -214328394 + L1MB7 LINE L1 5162 5393 -781 1913 174 0 3 chr3 13196184 13196477 -214328101 + AluJb SINE Alu 1 292 -20 939 154 46 36 chr3 13196477 13196521 -214328057 + L1MB7 LINE L1 5393 5435 -739 875 144 0 27 chr3 13196546 13196692 -214327886 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 13196729 13197032 -214327546 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 13197044 13197180 -214327398 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 13197180 13197485 -214327093 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 13197485 13197711 -214326867 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 13197721 13197973 -214326605 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 13198029 13198136 -214326442 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 13199109 13199408 -214325170 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13199409 13199530 -214325048 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13199530 13199849 -214324729 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13199849 13199958 -214324620 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13200110 13200275 -214324303 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 13200699 13201013 -214323565 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13201018 13201320 -214323258 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13202098 13202229 -214322349 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 13202625 13202922 -214321656 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 13202988 13203284 -214321294 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 13203306 13203619 -214320959 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 13204515 13204809 -214319769 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 13206465 13206548 -214318030 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 13207482 13207778 -214316800 + AluSx SINE Alu 1 311 -1 1141 61 0 0 chr3 13207778 13207910 -214316668 + AluY SINE Alu 1 132 -179 236 261 161 28 chr3 13209197 13209317 -214315261 - L2 LINE L2 -171 3142 2989 2519 96 6 0 chr3 13209317 13209670 -214314908 - THE1A LTR MaLR 0 355 1 236 261 161 28 chr3 13209670 13209729 -214314849 - L2 LINE L2 -324 2989 2939 1317 208 7 24 chr3 13210392 13210681 -214313897 + AluSx SINE Alu 1 284 -28 937 242 7 26 chr3 13210425 13210698 -214313880 + AluSx SINE Alu 34 301 -11 2304 122 0 0 chr3 13210845 13211148 -214313430 - AluSg SINE Alu -7 303 1 2486 68 0 0 chr3 13211155 13211466 -214313112 - AluY SINE Alu 0 311 1 740 242 11 78 chr3 13212201 13212470 -214312108 - L1MA7 LINE L1 -148 6143 5893 438 274 0 0 chr3 13212468 13212581 -214311997 + L1MA7 LINE L1 6173 6285 -6 * 1107 267 44 0 chr3 13213763 13214104 -214310474 - L1M4b LINE L1 -5910 949 594 469 71 43 0 chr3 13214105 13214175 -214310403 + LTR5 LTR ERVK 1 73 -896 6498 82 11 2 chr3 13214175 13215023 -214309555 + LTR5 LTR ERVK 115 969 0 21056 62 2 3 chr3 13215023 13217741 -214306837 + HERVK LTR ERVK 1 2715 -4528 17519 43 2 1 chr3 13217719 13219915 -214304663 + HERVK LTR ERVK 4951 7147 -96 * 417 95 11 168 chr3 13219918 13220013 -214304565 + SVA Other Other 857 936 -450 7664 59 7 21 chr3 13220013 13220996 -214303582 + LTR5 LTR ERVK 1 969 0 259 234 0 0 chr3 13221056 13221120 -214303458 - Charlie5 DNA MER1_type -119 2493 2430 1863 173 29 0 chr3 13221155 13221497 -214303081 - MLT1A1 LTR MaLR -1 364 13 1924 154 0 0 chr3 13221684 13221983 -214302595 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 13222048 13222069 -214302509 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 2101 122 0 7 chr3 13222557 13222860 -214301718 + AluSx SINE Alu 1 301 -11 366 136 0 61 chr3 13222883 13222949 -214301629 + AluJb SINE Alu 21 82 -220 25 31 0 0 chr3 13222949 13222981 -214301597 + AT_rich Low_complexity Low_complexity 1 32 0 1281 142 40 36 chr3 13222986 13223211 -214301367 + AluJb SINE Alu 64 289 -23 1968 101 14 20 chr3 13223220 13223517 -214301061 + AluSx SINE Alu 1 295 -17 2023 32 4 4 chr3 13223746 13223993 -214300585 - AluY SINE Alu -1 310 64 2241 148 56 30 chr3 13223994 13224426 -214300152 - LTR8A LTR ERV1 -284 443 1 209 275 100 12 chr3 13224868 13224948 -214299630 + MIR3 SINE MIR 105 191 -17 180 333 17 0 chr3 13225273 13225333 -214299245 + MIR SINE MIR 50 110 -152 2009 98 0 4 chr3 13225470 13225747 -214298831 + AluSx SINE Alu 5 280 -32 207 0 0 0 chr3 13225747 13225770 -214298808 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 278 313 125 10 chr3 13225789 13225885 -214298693 + MIR SINE MIR 21 127 -135 611 284 169 31 chr3 13225894 13226285 -214298293 - L2 LINE L2 0 3313 2869 807 148 31 0 chr3 13226890 13227018 -214297560 + FLAM_C SINE Alu 2 133 0 1200 216 23 36 chr3 13227026 13227157 -214297421 + AluJb SINE Alu 7 138 -174 189 0 0 0 chr3 13227157 13227178 -214297400 + (CA)n Simple_repeat Simple_repeat 2 22 0 1200 216 23 36 chr3 13227178 13227347 -214297231 + AluJb SINE Alu 138 303 -9 208 233 50 17 chr3 13227347 13227407 -214297171 + MIR SINE MIR 105 166 -96 1750 117 4 4 chr3 13228515 13228771 -214295807 + AluSg SINE Alu 38 293 -17 2134 112 0 0 chr3 13228780 13229075 -214295503 + AluSx SINE Alu 1 295 -17 267 320 40 24 chr3 13229286 13229411 -214295167 - MLT1K LTR MaLR -393 195 69 411 287 16 42 chr3 13229715 13229892 -214294686 + MIR3 SINE MIR 28 201 -7 815 213 109 10 chr3 13229938 13230278 -214294300 - MLT1J2 LTR MaLR -19 427 1 452 281 134 6 chr3 13230682 13230846 -214293732 + MIR SINE MIR 19 203 -59 1809 93 66 0 chr3 13230877 13231135 -214293443 + AluSg SINE Alu 21 295 -15 1918 144 7 13 chr3 13231149 13231454 -214293124 + AluJb SINE Alu 1 303 -9 666 176 16 102 chr3 13231489 13231676 -214292902 - AluJo SINE Alu -100 212 42 964 159 74 101 chr3 13231676 13231934 -214292644 - AluJo SINE Alu -17 295 45 2171 102 7 3 chr3 13231934 13232238 -214292340 - AluSx SINE Alu -3 309 5 380 227 92 87 chr3 13232244 13232342 -214292236 - MLT1D LTR MaLR -319 186 85 1631 163 38 7 chr3 13232342 13232630 -214291948 - AluJb SINE Alu -15 297 1 380 227 92 87 chr3 13232630 13232716 -214291862 - MLT1D LTR MaLR -420 85 1 342 256 35 0 chr3 13232966 13233052 -214291526 + MIR SINE MIR 59 147 -61 550 279 114 13 chr3 13234114 13234344 -214290234 + MIR SINE MIR 5 259 -3 259 162 73 88 chr3 13234453 13234521 -214290057 + MARNA DNA Mariner 450 516 -70 2125 77 0 4 chr3 13234523 13234797 -214289781 - AluSq SINE Alu -8 305 33 995 154 22 22 chr3 13234797 13234979 -214289599 - AluJb SINE Alu -10 302 121 2109 118 3 7 chr3 13236270 13236576 -214288002 + AluSq SINE Alu 1 305 -8 1841 84 95 7 chr3 13236586 13236871 -214287707 + AluSx SINE Alu 2 311 -1 429 291 59 13 chr3 13236908 13237475 -214287103 + L1MC4 LINE L1 7098 7629 -413 2132 96 3 0 chr3 13237556 13237848 -214286730 + AluY SINE Alu 1 293 -18 250 315 8 62 chr3 13237848 13237971 -214286607 + MER5B DNA MER1_type 32 149 -29 792 199 80 95 chr3 13238452 13238514 -214286064 - MIR SINE MIR 0 262 201 2255 95 0 0 chr3 13238514 13238809 -214285769 + AluSx SINE Alu 1 295 -17 792 199 80 95 chr3 13238809 13239008 -214285570 - MIR SINE MIR -61 201 5 418 238 165 61 chr3 13239031 13239195 -214285383 - MIR SINE MIR -60 202 22 414 259 122 27 chr3 13239985 13240132 -214284446 + MIR SINE MIR 6 166 -96 298 344 42 33 chr3 13240163 13240375 -214284203 - MIR SINE MIR -3 259 46 2228 108 0 0 chr3 13240492 13240797 -214283781 - AluSx SINE Alu -7 305 1 578 234 48 30 chr3 13240800 13240967 -214283611 + L2 LINE L2 3135 3304 -9 1488 155 26 37 chr3 13240981 13241252 -214283326 + AluJb SINE Alu 24 291 -21 2189 97 24 0 chr3 13241908 13242206 -214282372 - AluSx SINE Alu -7 305 1 719 238 48 29 chr3 13242451 13242657 -214281921 - MIR SINE MIR -51 211 2 308 217 23 205 chr3 13243188 13243302 -214281276 - MIR SINE MIR -17 245 112 1609 165 53 3 chr3 13243302 13243587 -214280991 - AluJo SINE Alu -13 299 1 308 217 23 205 chr3 13243587 13243616 -214280962 - MIR SINE MIR -150 112 79 2376 90 0 0 chr3 13243616 13243928 -214280650 + AluSx SINE Alu 1 312 0 308 217 23 205 chr3 13243928 13243948 -214280630 - MIR SINE MIR -183 79 57 2061 124 0 3 chr3 13243948 13244247 -214280331 + AluSc SINE Alu 1 298 -11 308 217 23 205 chr3 13244247 13244339 -214280239 - MIR SINE MIR -205 57 35 544 268 53 53 chr3 13244418 13244646 -214279932 + L2 LINE L2 3085 3312 -1 189 0 0 0 chr3 13245233 13245254 -214279324 + (A)n Simple_repeat Simple_repeat 1 21 0 2360 58 7 3 chr3 13245261 13245555 -214279023 - AluY SINE Alu -16 295 1 1112 66 0 0 chr3 13245557 13245693 -214278885 - AluSg SINE Alu -174 136 1 697 277 149 54 chr3 13245694 13246084 -214278494 + L2 LINE L2 2887 3313 0 255 211 0 0 chr3 13246279 13246331 -214278247 + L1ME3 LINE L1 6046 6097 -65 2223 100 7 0 chr3 13246336 13246637 -214277941 + AluSg SINE Alu 1 303 -7 2479 56 0 3 chr3 13246662 13246967 -214277611 + AluY SINE Alu 1 304 -7 1802 166 0 0 chr3 13247100 13247419 -214277159 - AluJb SINE Alu 0 319 1 264 59 0 0 chr3 13247474 13247508 -214277070 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 322 244 74 25 chr3 13248746 13248867 -214275711 + MIR SINE MIR 103 228 -34 * 348 260 39 10 chr3 13248830 13248934 -214275644 - MIR SINE MIR -3 259 153 2304 68 0 7 chr3 13248934 13249229 -214275349 - AluY SINE Alu -18 293 1 683 209 52 119 chr3 13249252 13249435 -214275143 + L1ME LINE L1 5289 5440 -722 654 179 0 0 chr3 13249435 13249541 -214275037 + U6 snRNA snRNA 2 107 0 683 209 52 119 chr3 13249541 13249701 -214274877 + L1ME LINE L1 5440 5609 -553 304 264 14 0 chr3 13249701 13249773 -214274805 - MIR SINE MIR -98 164 92 388 259 37 0 chr3 13249792 13249900 -214274678 + MIR SINE MIR 148 259 -3 299 282 113 8 chr3 13253670 13253794 -214270784 - MIR SINE MIR -85 177 41 590 222 19 61 chr3 13253828 13254040 -214270538 + MER3 DNA MER1_type 2 204 -5 223 301 97 44 chr3 13254051 13254164 -214270414 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 13254972 13255001 -214269577 + (A)n Simple_repeat Simple_repeat 1 29 0 462 300 246 29 chr3 13255806 13256086 -214268492 + MER102b DNA MER1_type 1 341 0 414 303 86 0 chr3 13256112 13256274 -214268304 + MIR SINE MIR 31 206 -56 545 281 112 31 chr3 13256445 13256669 -214267909 - MIR SINE MIR -20 242 1 513 320 115 24 chr3 13257933 13258264 -214266314 + L3 LINE CR1 1145 1505 -72 2225 61 0 58 chr3 13258327 13258640 -214265938 + AluY SINE Alu 1 295 -16 473 245 198 40 chr3 13258640 13258893 -214265685 - L2 LINE L2 -1 3312 3020 718 332 9 0 chr3 13259955 13260166 -214264412 + MIR SINE MIR 38 250 -12 739 240 29 124 chr3 13261314 13261736 -214262842 + MLT1J LTR MaLR 1 447 -64 2348 87 7 7 chr3 13261741 13262041 -214262537 - AluSq SINE Alu -13 300 1 699 92 0 23 chr3 13262052 13262204 -214262374 - AluSg/x SINE Alu 0 310 118 1828 63 0 9 chr3 13262205 13262427 -214262151 - AluSq SINE Alu -93 220 1 192 77 0 0 chr3 13262430 13262456 -214262122 + (T)n Simple_repeat Simple_repeat 1 26 0 497 89 129 20 chr3 13262480 13262581 -214261997 + L1MB7 LINE L1 6073 6184 0 823 193 27 16 chr3 13262609 13262796 -214261782 - MER5A DNA MER1_type 0 189 1 396 293 114 0 chr3 13262804 13262971 -214261607 + MIR SINE MIR 77 262 0 708 247 163 45 chr3 13263017 13263373 -214261205 - L2 LINE L2 0 3313 2916 957 97 0 0 chr3 13263760 13263884 -214260694 - FLAM_C SINE Alu -1 142 19 275 307 91 0 chr3 13263898 13263986 -214260592 - L2 LINE L2 -38 3234 3139 181 237 0 0 chr3 13263997 13264035 -214260543 + MER5B DNA MER1_type 4 41 -137 2445 66 7 10 chr3 13264264 13264568 -214260010 + AluY SINE Alu 3 305 -6 2404 81 0 7 chr3 13264573 13264871 -214259707 + AluSq SINE Alu 1 296 -17 1788 163 53 0 chr3 13264953 13265236 -214259342 + AluJo SINE Alu 5 302 -10 1935 157 6 10 chr3 13265236 13265548 -214259030 + AluJo SINE Alu 1 311 -1 322 233 68 0 chr3 13265549 13265622 -214258956 + Charlie4 DNA MER1_type 1884 1961 0 1749 177 25 0 chr3 13265674 13265957 -214258621 - AluJo SINE Alu -20 292 3 653 185 0 0 chr3 13265957 13266065 -214258513 - FLAM_A SINE Alu -34 108 1 252 272 68 68 chr3 13266070 13266217 -214258361 + MER5A DNA MER1_type 15 161 -28 252 352 40 8 chr3 13266118 13266243 -214258335 - MER5A DNA MER1_type -48 141 13 597 318 76 14 chr3 13266477 13266700 -214257878 + MIR SINE MIR 23 259 -3 2163 96 0 4 chr3 13266707 13266979 -214257599 - AluSg SINE Alu -39 271 1 2122 112 13 23 chr3 13266979 13267284 -214257294 - AluSx SINE Alu -10 302 1 784 305 146 32 chr3 13267428 13267555 -214257023 + L2 LINE L2 2565 2676 -596 1444 159 94 32 chr3 13267555 13267832 -214256746 - AluJo SINE Alu -14 298 5 784 305 146 32 chr3 13267832 13268330 -214256248 + L2 LINE L2 2676 3260 -12 1263 134 9 22 chr3 13268389 13268620 -214255958 - L1MB3 LINE L1 -4 6179 5952 1041 239 46 0 chr3 13268644 13268924 -214255654 - L1MC4 LINE L1 -456 7586 7294 1994 104 11 25 chr3 13268931 13269209 -214255369 - AluSx SINE Alu -23 289 16 357 240 96 27 chr3 13269971 13270117 -214254461 + MIR SINE MIR 80 235 -27 200 315 112 11 chr3 13270244 13270333 -214254245 - L2 LINE L2 -2 3270 3173 36 0 0 0 chr3 13270455 13270491 -214254087 + AT_rich Low_complexity Low_complexity 1 36 0 2458 50 3 7 chr3 13270894 13271193 -214253385 - AluY SINE Alu -13 298 1 697 151 8 0 chr3 13271213 13271339 -214253239 - FLAM_C SINE Alu -3 140 14 242 309 149 52 chr3 13271358 13271760 -214252818 + L2 LINE L2 2818 3258 -14 2513 66 13 0 chr3 13273394 13273696 -214250882 - AluY SINE Alu -5 306 1 760 212 35 6 chr3 13273696 13273866 -214250712 - AluSg/x SINE Alu -2 308 134 207 299 11 11 chr3 13273887 13273974 -214250604 + L2 LINE L2 2302 2388 -926 1313 108 0 0 chr3 13274403 13274579 -214249999 - AluSg/x SINE Alu 0 312 137 2033 153 3 0 chr3 13274583 13274877 -214249701 - AluSx SINE Alu -17 295 1 1339 105 41 0 chr3 13275414 13275586 -214248992 + AluSq SINE Alu 1 179 -134 398 343 11 17 chr3 13275895 13276214 -214248364 + G-rich Low_complexity Low_complexity 1 317 0 186 143 0 0 chr3 13276939 13276974 -214247604 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1006 295 167 16 chr3 13277068 13278041 -214246537 + L2 LINE L2 1879 3009 -263 589 341 57 0 chr3 13278079 13278238 -214246340 + MIR SINE MIR 18 195 -67 1952 137 0 44 chr3 13278238 13278383 -214246195 + AluSx SINE Alu 1 151 -161 2133 91 31 11 chr3 13278383 13278669 -214245909 + AluSx SINE Alu 3 294 -18 1952 137 0 44 chr3 13278669 13278838 -214245740 + AluSx SINE Alu 151 301 -11 589 341 57 0 chr3 13278838 13278907 -214245671 + MIR SINE MIR 195 259 -3 261 271 54 47 chr3 13278917 13279046 -214245532 + L2 LINE L2 3133 3262 -51 287 217 17 0 chr3 13279555 13279615 -214244963 + MIR SINE MIR 78 138 -70 1838 173 0 17 chr3 13279645 13279946 -214244632 + AluJo SINE Alu 1 296 -16 2122 122 0 16 chr3 13280167 13280285 -214244293 + AluSx SINE Alu 5 123 -189 198 118 0 0 chr3 13280285 13280319 -214244259 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2122 122 0 16 chr3 13280319 13280511 -214244067 + AluSx SINE Alu 123 310 -2 2289 117 0 7 chr3 13280511 13280819 -214243759 + AluSx SINE Alu 1 306 -6 1130 130 0 30 chr3 13280819 13280988 -214243590 + AluSg/x SINE Alu 134 297 -15 304 179 0 119 chr3 13281076 13281103 -214243475 - MER116 DNA Mariner -4 76 47 2243 96 0 13 chr3 13281103 13281405 -214243173 + AluSx SINE Alu 1 298 -14 304 179 0 119 chr3 13281405 13281461 -214243117 - MER116 DNA Mariner -33 47 3 618 200 77 0 chr3 13281468 13281598 -214242980 + MIR SINE MIR 89 228 -34 219 303 30 15 chr3 13282044 13282110 -214242468 + MER91A DNA MER1_type 130 196 0 2026 117 72 3 chr3 13282670 13282961 -214241617 - AluSx SINE Alu -1 311 1 353 255 38 0 chr3 13282962 13283068 -214241510 + MIR SINE MIR 78 187 -75 1268 206 32 21 chr3 13283405 13283687 -214240891 - AluSg SINE Alu -25 285 1 1723 149 3 77 chr3 13283886 13284209 -214240369 - AluJo SINE Alu -13 299 1 2160 126 7 13 chr3 13285829 13286139 -214238439 + AluSx SINE Alu 1 308 -4 2248 89 10 17 chr3 13286144 13286446 -214238132 + AluSq SINE Alu 1 300 -13 2481 77 7 0 chr3 13286446 13286746 -214237832 + AluY SINE Alu 1 302 -9 616 161 0 73 chr3 13286748 13286872 -214237706 - AluJo/FLAM SINE Alu -196 116 2 407 141 12 47 chr3 13286889 13286974 -214237604 - FLAM_A SINE Alu -20 122 41 2159 142 0 3 chr3 13286974 13287270 -214237308 - AluSx SINE Alu -17 295 1 263 293 19 19 chr3 13287366 13287472 -214237106 + L2 LINE L2 2947 3052 -220 239 301 125 7 chr3 13287613 13287749 -214236829 - MIR SINE MIR -3 259 108 225 94 0 0 chr3 13287979 13288011 -214236567 + (TG)n Simple_repeat Simple_repeat 2 33 0 245 299 75 54 chr3 13289343 13289490 -214235088 - MIR SINE MIR -14 248 99 682 193 0 0 chr3 13289947 13290093 -214234485 - FLAM_C SINE Alu 0 151 6 288 200 17 0 chr3 13290137 13290197 -214234381 + MIR SINE MIR 88 148 -60 215 313 111 63 chr3 13290674 13290832 -214233746 + MIR SINE MIR 29 192 -70 2350 83 3 3 chr3 13291074 13291374 -214233204 - AluSp SINE Alu 0 313 14 2295 101 0 0 chr3 13291514 13291811 -214232767 - AluY SINE Alu -9 302 6 447 100 0 0 chr3 13291831 13291901 -214232677 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1967 157 0 0 chr3 13291901 13292181 -214232397 - AluJb SINE Alu -32 280 1 2131 151 0 3 chr3 13292232 13292544 -214232034 - AluJo SINE Alu -1 311 1 2257 98 0 7 chr3 13292557 13292853 -214231725 - AluSq SINE Alu -19 294 1 542 303 118 26 chr3 13292873 13293220 -214231358 + L1MC/D LINE L1 5445 5823 -1985 1190 113 40 28 chr3 13293220 13293397 -214231181 + AluSq SINE Alu 1 179 -134 945 98 8 0 chr3 13293613 13293736 -214230842 + AluSg/x SINE Alu 170 293 -17 197 163 0 0 chr3 13293969 13294012 -214230566 + L2 LINE L2 2929 2971 -301 1871 148 50 0 chr3 13294265 13294562 -214230016 + AluSx SINE Alu 1 312 0 1129 68 0 0 chr3 13294562 13294694 -214229884 + AluY SINE Alu 1 132 -179 1982 121 29 36 chr3 13296600 13296906 -214227672 - AluSg SINE Alu -4 306 3 2397 105 0 0 chr3 13296908 13297212 -214227366 - AluSx SINE Alu -6 306 3 790 155 0 0 chr3 13297243 13297372 -214227206 - FLAM_C SINE Alu 0 133 5 419 277 55 21 chr3 13297372 13297555 -214227023 - MIR SINE MIR -55 207 16 275 82 0 7 chr3 13297895 13297942 -214226636 - AluYa8 SINE Alu -106 194 156 774 210 0 89 chr3 13298442 13298532 -214226046 - MER3 DNA MER1_type -8 201 105 2124 85 22 63 chr3 13298532 13298848 -214225730 + AluSq SINE Alu 2 304 -9 774 210 0 89 chr3 13298848 13298971 -214225607 - MER3 DNA MER1_type -104 105 7 390 231 46 9 chr3 13300457 13300565 -214224013 - MIR SINE MIR -3 259 148 299 208 28 14 chr3 13300584 13300656 -214223922 + MIR SINE MIR 92 164 -98 683 209 52 119 chr3 13300656 13300816 -214223762 - L1ME LINE L1 -553 5609 5483 560 198 0 0 chr3 13300816 13300922 -214223656 - U6 snRNA snRNA 0 107 2 683 209 52 119 chr3 13300922 13301105 -214223473 - L1ME LINE L1 -679 5483 5289 2445 68 0 7 chr3 13301127 13301422 -214223156 + AluY SINE Alu 1 293 -18 353 260 39 10 chr3 13301422 13301526 -214223052 + MIR SINE MIR 153 259 -3 325 244 74 25 chr3 13301489 13301610 -214222968 - MIR SINE MIR -34 228 103 * 228 67 0 0 chr3 13302847 13302877 -214221701 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2182 141 0 0 chr3 13302932 13303237 -214221341 + AluSx SINE Alu 1 305 -7 196 286 0 32 chr3 13303252 13303315 -214221263 + L2 LINE L2 3205 3265 -7 2265 109 0 26 chr3 13303315 13303619 -214220959 + AluSx SINE Alu 1 296 -16 240 253 33 22 chr3 13304409 13304500 -214220078 + MIR SINE MIR 67 158 -104 2308 93 3 3 chr3 13304814 13305116 -214219462 - AluSx SINE Alu -10 302 1 332 296 21 21 chr3 13305118 13305304 -214219274 - L1MC4a LINE L1 -1904 5904 5719 2442 87 0 6 chr3 13305561 13305873 -214218705 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 13305882 13306251 -214218327 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 13306660 13306941 -214217637 + AluSx SINE Alu 1 281 -31 2130 140 3 3 chr3 13306943 13307250 -214217328 + AluJb SINE Alu 1 307 -5 2420 91 0 0 chr3 13307274 13307571 -214217007 - AluSx SINE Alu -15 297 1 513 286 42 37 chr3 13307633 13307986 -214216592 - L1MC5 LINE L1 -179 7782 7428 586 249 147 62 chr3 13308050 13308472 -214216106 + HAL1 LINE L1 1978 2435 -72 2231 124 0 0 chr3 13308522 13308821 -214215757 + AluSx SINE Alu 1 299 -13 1031 114 0 0 chr3 13309367 13309499 -214215079 + AluSq/x SINE Alu 1 132 -180 460 287 174 0 chr3 13309520 13309715 -214214863 + MIR SINE MIR 20 248 -14 692 295 189 19 chr3 13310344 13310826 -214213752 + L3 LINE CR1 723 1286 -291 206 234 0 0 chr3 13310997 13311044 -214213534 + L3 LINE CR1 1336 1382 -195 2664 40 0 0 chr3 13311503 13311799 -214212779 + AluY SINE Alu 1 296 -15 2345 82 7 3 chr3 13312733 13313025 -214211553 - AluSx SINE Alu -15 297 5 373 227 92 87 chr3 13313031 13313129 -214211449 - MLT1D LTR MaLR -319 186 85 1751 163 38 7 chr3 13313129 13313417 -214211161 - AluJb SINE Alu -15 297 1 373 227 92 87 chr3 13313417 13313503 -214211075 - MLT1D LTR MaLR -420 85 1 335 256 35 0 chr3 13313753 13313839 -214210739 + MIR SINE MIR 59 147 -61 537 256 81 11 chr3 13314900 13315076 -214209502 + MIR SINE MIR 5 194 -62 259 162 73 88 chr3 13315239 13315307 -214209271 + MARNA DNA Mariner 450 516 -70 2281 73 0 4 chr3 13315309 13315583 -214208995 - AluSq SINE Alu -8 305 33 1118 137 22 22 chr3 13315583 13315765 -214208813 - AluJb SINE Alu -10 302 121 180 88 59 29 chr3 13317019 13317053 -214207525 - MER5A DNA MER1_type -24 165 131 2278 113 3 7 chr3 13317058 13317367 -214207211 + AluSq SINE Alu 1 308 -5 1956 92 95 0 chr3 13317377 13317660 -214206918 + AluSx SINE Alu 2 311 -1 447 239 97 18 chr3 13317697 13317923 -214206655 + L1MC4 LINE L1 7098 7341 -701 324 214 7 29 chr3 13318080 13318220 -214206358 + CT-rich Low_complexity Low_complexity 2 138 0 2516 67 0 0 chr3 13318386 13318685 -214205893 + AluY SINE Alu 1 299 -12 1158 195 163 4 chr3 13318697 13318954 -214205624 + AluJo SINE Alu 4 301 -1 2133 141 7 0 chr3 13319213 13319510 -214205068 + AluSx SINE Alu 3 301 -11 2187 120 3 7 chr3 13319510 13319809 -214204769 + AluSx SINE Alu 1 298 -14 2187 110 0 3 chr3 13319809 13320101 -214204477 + AluSx SINE Alu 1 291 -21 260 288 167 15 chr3 13320192 13320324 -214204254 - L2 LINE L2 -249 3023 2872 2535 78 0 0 chr3 13320357 13320663 -214203915 + AluY SINE Alu 1 306 -5 218 307 139 0 chr3 13320804 13320905 -214203673 + L2 LINE L2 3158 3272 0 448 213 176 15 chr3 13320945 13321081 -214203497 - MER20 DNA MER1_type -5 214 57 349 164 33 0 chr3 13321124 13321185 -214203393 - MER20 DNA MER1_type -154 65 3 1677 159 35 14 chr3 13321998 13322288 -214202290 + AluJb SINE Alu 1 296 -16 2245 104 0 0 chr3 13322290 13322600 -214201978 + AluSc SINE Alu 1 310 0 25 0 0 0 chr3 13322655 13322680 -214201898 + AT_rich Low_complexity Low_complexity 1 25 0 1010 133 143 19 chr3 13322976 13323136 -214201442 - MER46A DNA MER2_type -2495 236 43 2190 138 0 0 chr3 13323136 13323433 -214201145 - AluSx SINE Alu -15 297 1 1010 133 143 19 chr3 13323433 13323482 -214201096 - MER46A DNA MER2_type -2688 43 1 463 304 120 14 chr3 13323492 13323709 -214200869 - MIR SINE MIR -3 259 20 2142 130 0 0 chr3 13324123 13324415 -214200163 - AluSq SINE Alu -21 292 1 627 284 43 43 chr3 13324415 13324619 -214199959 + MER113 DNA MER1_type? 189 395 -126 2578 87 0 0 chr3 13324619 13324929 -214199649 + AluSx SINE Alu 1 310 -2 627 284 43 43 chr3 13324929 13325052 -214199526 + MER113 DNA MER1_type? 394 516 -5 2463 84 3 10 chr3 13325650 13325961 -214198617 + AluSg SINE Alu 1 309 -1 2118 137 10 0 chr3 13326316 13326615 -214197963 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13326616 13326737 -214197841 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13326737 13327056 -214197522 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13327056 13327165 -214197413 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13327317 13327482 -214197096 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 13327903 13328217 -214196361 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13328222 13328524 -214196054 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13329302 13329433 -214195145 + FLAM_A SINE Alu 1 127 -6 2190 124 3 0 chr3 13329829 13330128 -214194450 + AluSx SINE Alu 1 300 -12 1888 132 24 17 chr3 13330194 13330490 -214194088 + AluJo SINE Alu 1 298 -14 2448 62 7 3 chr3 13330512 13330802 -214193776 + AluY SINE Alu 1 291 -20 207 0 0 0 chr3 13330813 13330836 -214193742 + (T)n Simple_repeat Simple_repeat 1 23 0 533 268 53 53 chr3 13331421 13331649 -214192929 - L2 LINE L2 -1 3312 3085 274 272 11 43 chr3 13331728 13331820 -214192758 + MIR SINE MIR 35 123 -139 2174 127 0 3 chr3 13331820 13332119 -214192459 - AluSc SINE Alu -11 298 1 621 146 0 9 chr3 13332127 13332139 -214192439 - FLAM_C SINE Alu -169 143 132 2472 87 0 0 chr3 13332139 13332450 -214192128 - AluY SINE Alu 0 311 1 621 146 0 9 chr3 13332450 13332547 -214192031 - FLAM_C SINE Alu -180 132 35 2543 55 0 0 chr3 13333524 13333814 -214190764 - AluY SINE Alu -21 290 1 248 308 0 0 chr3 13333815 13333880 -214190698 + L2 LINE L2 2996 3060 -212 203 430 0 0 chr3 13333954 13334040 -214190538 + L2 LINE L2 3111 3196 -76 272 350 0 0 chr3 13334534 13334653 -214189925 + T-rich Low_complexity Low_complexity 1 119 0 515 191 84 71 chr3 13384665 13384890 -214139688 - AluY SINE Alu -80 231 4 746 187 7 7 chr3 13384986 13385136 -214139442 + L1MB3 LINE L1 5948 6097 -86 1654 119 4 45 chr3 13385152 13385421 -214139157 - LTR8 LTR ERV1 -433 258 1 497 236 49 0 chr3 13385421 13385544 -214139034 - L1ME LINE L1 -401 5763 5635 395 114 48 59 chr3 13385745 13385777 -214138801 - L1ME LINE L1 -518 5647 5616 2525 136 50 68 chr3 13385777 13386276 -214138302 - LTR2B LTR ERV1 0 490 1 395 114 48 59 chr3 13386276 13386339 -214138239 - L1ME LINE L1 -549 5616 5552 1873 176 6 6 chr3 13386358 13386670 -214137908 - AluJb SINE Alu 0 312 1 786 216 13 0 chr3 13386670 13386823 -214137755 - L1ME LINE L1 -587 5579 5425 * 1205 212 21 82 chr3 13386810 13387090 -214137488 + L1M4 LINE L1 4848 5101 -1045 1980 150 10 16 chr3 13387090 13387404 -214137174 + AluJo SINE Alu 1 312 0 1205 212 21 82 chr3 13387404 13387500 -214137078 + L1M4 LINE L1 5101 5201 -945 2503 49 0 3 chr3 13387500 13387788 -214136790 + AluY SINE Alu 1 287 -24 3658 110 24 17 chr3 13387806 13388418 -214136160 + Tigger1 DNA MER2_type 1579 2263 -155 1338 243 36 13 chr3 13388552 13388817 -214135761 - L1MCa LINE L1 -2570 3856 3598 2026 115 39 39 chr3 13388817 13388991 -214135587 - AluSx SINE Alu 0 312 139 390 42 0 0 chr3 13388991 13389039 -214135539 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2023 113 3 11 chr3 13389039 13389323 -214135255 - AluSx SINE Alu -30 282 1 2026 115 39 39 chr3 13389323 13389459 -214135119 - AluSx SINE Alu -171 141 1 1338 243 36 13 chr3 13389459 13389642 -214134936 - L1MCa LINE L1 -2828 3598 3398 1392 196 28 0 chr3 13389644 13389894 -214134684 - AluJo SINE Alu -12 300 44 873 123 15 8 chr3 13389903 13390033 -214134545 - AluJb SINE Alu -171 141 11 937 202 0 0 chr3 13390040 13390258 -214134320 - L1MCa LINE L1 -3006 3420 3203 553 225 0 39 chr3 13390262 13390391 -214134187 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 13390426 13390446 -214134132 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2067 121 29 0 chr3 13390448 13390728 -214133850 - AluSg SINE Alu -22 288 1 1963 250 55 2 chr3 13390733 13391301 -214133277 - L1MCa LINE L1 -3234 3192 2595 1055 157 35 0 chr3 13391303 13391475 -214133103 - AluJo/FRAM SINE Alu -1 311 134 2295 99 3 10 chr3 13391475 13391787 -214132791 - AluY SINE Alu -1 310 1 1760 146 76 12 chr3 13391787 13392244 -214132334 - L1MCa LINE L1 -3947 2479 2126 1067 57 0 0 chr3 13392256 13392379 -214132199 - AluSc SINE Alu -186 123 1 631 138 288 0 chr3 13392379 13392539 -214132039 - L1MCa LINE L1 -4287 2139 1934 2025 144 0 0 chr3 13392796 13393087 -214131491 + AluSx SINE Alu 1 291 -21 2536 56 0 13 chr3 13393260 13393564 -214131014 + AluY SINE Alu 1 300 -11 1805 141 31 10 chr3 13393603 13393893 -214130685 + AluJo SINE Alu 5 300 -12 438 297 198 4 chr3 13394140 13394372 -214130206 + MLT1L LTR MaLR 216 492 -123 2279 110 0 3 chr3 13394754 13395054 -214129524 + AluSq SINE Alu 1 299 -14 290 243 14 14 chr3 13395141 13395211 -214129367 - Tigger2 DNA MER2_type 0 2718 2649 1776 164 0 30 chr3 13395211 13395515 -214129063 - AluJo SINE Alu -15 297 3 933 41 0 0 chr3 13395517 13395638 -214128940 - Tigger2 DNA MER2_type -162 2556 2436 1982 108 37 27 chr3 13395638 13395934 -214128644 + THE1B LTR MaLR 1 299 -65 2206 108 6 25 chr3 13395934 13396250 -214128328 - AluSg SINE Alu 0 310 1 2287 101 20 0 chr3 13396250 13396547 -214128031 - AluSg SINE Alu -6 304 2 2724 148 87 8 chr3 13396550 13396962 -214127616 + HUERS-P1 LTR ERV1 3914 4379 -1567 2223 80 0 0 chr3 13396962 13397237 -214127341 + AluSq SINE Alu 25 299 -14 2724 148 87 8 chr3 13397237 13397352 -214127226 + HUERS-P1 LTR ERV1 4379 4483 -1463 1090 54 0 8 chr3 13397353 13397483 -214127095 + AluY SINE Alu 98 226 -85 2132 104 13 13 chr3 13397489 13397798 -214126780 + AluSc SINE Alu 1 309 0 1926 129 0 44 chr3 13397819 13398147 -214126431 + AluSx SINE Alu 1 315 0 8094 98 16 33 chr3 13398147 13398425 -214126153 + HUERS-P1 LTR ERV1 5065 5346 -917 2365 78 3 3 chr3 13398425 13398719 -214125859 + AluSp SINE Alu 2 295 -18 8094 98 16 33 chr3 13398719 13399022 -214125556 + HUERS-P1 LTR ERV1 5346 5653 -610 1854 125 31 48 chr3 13399022 13399343 -214125235 - AluSx SINE Alu 0 316 1 8094 98 16 33 chr3 13399343 13399370 -214125208 + HUERS-P1 LTR ERV1 5653 5679 -584 2449 75 0 0 chr3 13399370 13399664 -214124914 + AluY SINE Alu 1 294 -17 8094 98 16 33 chr3 13399664 13400301 -214124277 + HUERS-P1 LTR ERV1 5679 6263 0 4661 104 6 56 chr3 13400301 13401029 -214123549 + LTR8 LTR ERV1 1 691 0 334 255 50 21 chr3 13401034 13401175 -214123403 - L1M4 LINE L1 -899 5247 5103 359 235 53 38 chr3 13401213 13401345 -214123233 - L1M4 LINE L1 -1014 5132 4999 202 239 0 0 chr3 13401358 13401404 -214123174 + T-rich Low_complexity Low_complexity 1 46 0 423 207 24 0 chr3 13401467 13401549 -214123029 - FLAM SINE Alu -20 123 40 416 200 139 133 chr3 13401579 13401692 -214122886 - MER5A DNA MER1_type 0 189 73 1857 141 3 17 chr3 13401692 13401983 -214122595 - AluJo SINE Alu -25 287 1 416 200 139 133 chr3 13401983 13402049 -214122529 - MER5A DNA MER1_type -116 73 9 2253 100 6 16 chr3 13402090 13402401 -214122177 + AluSp SINE Alu 2 309 -4 2217 126 0 0 chr3 13402409 13402711 -214121867 + AluSx SINE Alu 1 302 -10 377 242 0 22 chr3 13402925 13403016 -214121562 + MLT1F LTR MaLR 47 135 -407 603 122 28 37 chr3 13403019 13403126 -214121452 + L1MB8 LINE L1 6035 6140 -38 704 229 44 84 chr3 13403172 13403231 -214121347 + L1ME3 LINE L1 5919 5979 -183 2048 133 0 25 chr3 13403231 13403546 -214121032 + AluSx SINE Alu 1 307 -5 704 229 44 84 chr3 13403546 13403735 -214120843 + L1ME3 LINE L1 5979 6155 -7 1548 179 7 24 chr3 13403737 13404027 -214120551 - AluSp SINE Alu -17 296 12 2398 81 10 0 chr3 13404631 13404928 -214119650 - AluSg SINE Alu -10 300 1 452 341 25 47 chr3 13404932 13405296 -214119282 - HERV30 LTR ERV1 -2093 5029 4674 21 0 0 0 chr3 13405369 13405390 -214119188 + AT_rich Low_complexity Low_complexity 1 21 0 2345 76 0 3 chr3 13405395 13405686 -214118892 + AluSg SINE Alu 1 290 -20 1562 336 38 46 chr3 13406027 13406062 -214118516 - HERV30 LTR ERV1 -2813 4309 4275 1818 188 0 0 chr3 13406062 13406355 -214118223 + AluJo SINE Alu 3 295 -17 1562 336 38 46 chr3 13406355 13407437 -214117141 - HERV30 LTR ERV1 -2847 4275 3201 507 348 18 26 chr3 13407504 13407777 -214116801 - HERV30 LTR ERV1 -4020 3102 2832 413 100 0 0 chr3 13407849 13407909 -214116669 + Alu SINE Alu 246 305 -4 761 339 47 50 chr3 13407976 13408617 -214115961 - HERV30 LTR ERV1 -5568 1554 916 399 298 57 19 chr3 13408810 13408968 -214115610 - HERV30 LTR ERV1 -6646 1611 1448 * 1714 258 47 59 chr3 13408945 13409557 -214115021 - HERV30 LTR ERV1 -5188 1075 471 2463 77 0 7 chr3 13409674 13409984 -214114594 + AluY SINE Alu 1 308 -3 275 377 45 13 chr3 13409996 13410150 -214114428 - HERV30 LTR ERV1 -6080 183 25 3406 136 30 76 chr3 13410174 13410806 -214113772 - LTR26 LTR ERV1 0 603 1 371 88 29 88 chr3 13410808 13410830 -214113748 + LTR49-int LTR ERV1 2084 2106 -4225 2015 143 74 36 chr3 13410830 13411018 -214113560 - LTR23 LTR ERV1 0 437 258 2344 87 3 13 chr3 13411018 13411328 -214113250 + AluSx SINE Alu 1 307 -5 2015 143 74 36 chr3 13411328 13411560 -214113018 - LTR23 LTR ERV1 -179 258 1 371 88 29 88 chr3 13411560 13411605 -214112973 + LTR49-int LTR ERV1 2106 2147 -4184 2071 121 3 33 chr3 13411610 13411729 -214112849 - L1PB3 LINE L1 -7 6147 6026 363 23 0 0 chr3 13411729 13411773 -214112805 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2233 64 11 0 chr3 13411773 13412054 -214112524 - AluSp SINE Alu -29 284 1 2071 121 3 33 chr3 13412054 13412263 -214112315 - L1PB3 LINE L1 -126 6028 5828 1839 128 37 3 chr3 13412263 13412560 -214112018 - AluSx SINE Alu -3 309 3 2250 91 7 3 chr3 13412597 13412905 -214111673 - AluY SINE Alu -2 309 1 1400 220 58 47 chr3 13412916 13413305 -214111273 - L1M4 LINE L1 -1807 4339 3943 2213 89 0 13 chr3 13413305 13413609 -214110969 - AluSc SINE Alu -9 300 1 1400 220 58 47 chr3 13413609 13413669 -214110909 - L1M4 LINE L1 -2203 3943 3885 1446 204 72 135 chr3 13413669 13414394 -214110184 - LTR8A LTR ERV1 0 727 49 976 153 10 61 chr3 13414396 13414592 -214109986 - LTR8 LTR ERV1 -503 188 3 5038 69 14 43 chr3 13414592 13415172 -214109406 - LTR8 LTR ERV1 0 691 134 2169 29 39 59 chr3 13415172 13415479 -214109099 + AluY SINE Alu 1 301 -10 5038 69 14 43 chr3 13415479 13415610 -214108968 - LTR8 LTR ERV1 -557 134 1 519 138 0 12 chr3 13415672 13415752 -214108826 - AluJ/FLAM SINE Alu -225 87 9 552 238 67 54 chr3 13415763 13415986 -214108592 - L1M4 LINE L1 -2368 3778 3553 22 35 0 0 chr3 13416002 13416031 -214108547 + GC_rich Low_complexity Low_complexity 1 29 0 2008 103 3 0 chr3 13416436 13416726 -214107852 + AluSx SINE Alu 1 291 -21 1812 157 0 0 chr3 13416741 13417040 -214107538 + AluJo SINE Alu 1 299 -13 1736 130 44 0 chr3 13417304 13417597 -214106981 + AluSq SINE Alu 1 306 -7 216 0 0 0 chr3 13417600 13417624 -214106954 + (TA)n Simple_repeat Simple_repeat 2 25 0 2141 65 25 0 chr3 13418683 13418983 -214105595 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 13419459 13419503 -214105075 - L1M4 LINE L1 -2585 3561 3518 2345 74 0 10 chr3 13419503 13419812 -214104766 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 13419812 13419852 -214104726 - L1M4 LINE L1 -2628 3518 3479 1597 161 39 7 chr3 13419852 13420137 -214104441 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 13420137 13420336 -214104242 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 13420341 13420406 -214104172 - L1MB5 LINE L1 -6 6168 6100 1789 175 59 71 chr3 13420406 13420845 -214103733 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 13420843 13420916 -214103662 - LTR8 LTR ERV1 -613 78 1 * 814 191 48 33 chr3 13420919 13421129 -214103449 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 13421129 13421279 -214103299 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 13421300 13421424 -214103154 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 13421433 13421456 -214103122 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 13421556 13421736 -214102842 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 13421741 13421763 -214102815 + AT_rich Low_complexity Low_complexity 1 22 0 1911 130 7 20 chr3 13421770 13421906 -214102672 + AluSx SINE Alu 1 137 -175 2228 105 3 0 chr3 13421906 13422210 -214102368 + AluSp SINE Alu 2 306 -7 1911 130 7 20 chr3 13422210 13422373 -214102205 + AluSx SINE Alu 137 296 -16 786 161 0 0 chr3 13422400 13422518 -214102060 - FLAM_C SINE Alu -15 118 1 1949 138 0 3 chr3 13422583 13422874 -214101704 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 13422891 13423062 -214101516 - FAM SINE Alu -1 174 5 864 144 0 98 chr3 13423117 13423267 -214101311 + Tigger2a DNA MER2_type 1 133 -2575 2205 88 0 0 chr3 13423267 13423561 -214101017 + AluY SINE Alu 1 294 -17 864 144 0 98 chr3 13423561 13423583 -214100995 + Tigger2a DNA MER2_type 133 156 -278 363 122 0 0 chr3 13423583 13423632 -214100946 - THE1A LTR MaLR 0 355 307 2016 117 0 0 chr3 13423635 13423926 -214100652 - AluSg1 SINE Alu -18 291 1 664 158 44 0 chr3 13423946 13424060 -214100518 - FLAM_C SINE Alu -19 124 6 1054 209 72 19 chr3 13424065 13424372 -214100206 - L1M4 LINE L1 -1440 4706 4384 1609 161 3 30 chr3 13424378 13424432 -214100146 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 13424432 13424773 -214099805 + MER61A LTR ERV1 1 343 0 1609 161 3 30 chr3 13424773 13425016 -214099562 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 13425069 13425365 -214099213 - AluY SINE Alu -2 309 1 2028 113 6 49 chr3 13425380 13425706 -214098872 - AluSx SINE Alu 0 312 1 740 147 0 0 chr3 13425711 13425820 -214098758 - MER50 LTR ERV1 -556 178 70 674 173 0 0 chr3 13425821 13425931 -214098647 + FLAM_C SINE Alu 19 128 -15 2304 80 0 3 chr3 13425936 13426247 -214098331 + AluY SINE Alu 1 310 -1 3961 168 11 18 chr3 13426247 13426910 -214097668 + L1P5 LINE L1 4484 5150 -1004 1999 121 0 14 chr3 13426910 13427207 -214097371 + AluSx SINE Alu 1 293 -19 3961 168 11 18 chr3 13427207 13427667 -214096911 + L1P5 LINE L1 5150 5595 -559 2124 108 3 7 chr3 13427667 13427974 -214096604 - AluSx SINE Alu -6 306 1 3961 168 11 18 chr3 13427974 13427987 -214096591 + L1P5 LINE L1 5595 5607 -547 1824 173 0 0 chr3 13428805 13429117 -214095461 + AluJo SINE Alu 1 312 0 412 334 66 36 chr3 13429541 13429846 -214094732 + HUERS-P1 LTR ERV1 5946 6259 -4 * 3818 164 13 50 chr3 13429833 13429848 -214094730 - LTR49-int LTR ERV1 -4230 2101 2087 3853 128 13 37 chr3 13429848 13430466 -214094112 + LTR26 LTR ERV1 1 603 0 3818 164 13 50 chr3 13430466 13430922 -214093656 - LTR49-int LTR ERV1 -4244 2087 1666 2064 82 0 17 chr3 13430922 13431213 -214093365 - AluSg1 SINE Alu -19 290 5 3818 164 13 50 chr3 13431213 13431498 -214093080 - LTR49-int LTR ERV1 -4665 1666 1372 2114 98 11 0 chr3 13431533 13431819 -214092759 - AluY SINE Alu -13 298 10 549 115 67 5 chr3 13431914 13432018 -214092560 - LTR49-int LTR ERV1 -2946 1934 1290 336 257 0 14 chr3 13432072 13432142 -214092436 - tRNA-Glu-GAG tRNA tRNA 0 75 7 1914 154 77 100 chr3 13432169 13432637 -214091941 - LTR49-int LTR ERV1 -5141 1190 734 2030 133 0 7 chr3 13432639 13432948 -214091630 + AluSx SINE Alu 1 307 -5 606 188 10 0 chr3 13432949 13433045 -214091533 - LTR49-int LTR ERV1 -6234 97 1 672 103 62 0 chr3 13433051 13433169 -214091409 + LTR49 LTR ERV1 486 592 -3 3605 195 53 51 chr3 13433172 13433387 -214091191 + L1ME1 LINE L1 5236 5449 -717 261 57 0 0 chr3 13433387 13433422 -214091156 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9924 41 73 5 chr3 13433422 13434697 -214089881 - SVA Other Other -19 1367 6 3605 195 53 51 chr3 13434697 13435406 -214089172 + L1ME1 LINE L1 5448 6161 -5 641 198 41 8 chr3 13435598 13435719 -214088859 + FLAM_C SINE Alu 2 126 -17 1097 127 12 0 chr3 13435874 13436040 -214088538 + AluSg/x SINE Alu 131 298 -14 1734 217 5 8 chr3 13436042 13436433 -214088145 + L1MB4 LINE L1 4817 5206 -940 2026 103 31 0 chr3 13436457 13436747 -214087831 - AluSx SINE Alu -13 299 1 4635 137 37 18 chr3 13436749 13437568 -214087010 + L1MB4 LINE L1 5337 6170 -10 769 237 0 0 chr3 13437746 13437898 -214086680 - FRAM SINE Alu -14 152 1 2440 42 0 33 chr3 13437973 13438279 -214086299 + AluY SINE Alu 1 296 -15 265 282 53 0 chr3 13438535 13438666 -214085912 + L1MDa LINE L1 2444 2581 -3959 552 223 12 54 chr3 13439194 13439360 -214085218 - L1ME2 LINE L1 -10 6154 5996 * 580 274 17 45 chr3 13439348 13439514 -214085064 + L1MDa LINE L1 2918 3074 -3466 1562 171 0 63 chr3 13439514 13439847 -214084731 - AluJo SINE Alu 0 312 1 580 274 17 45 chr3 13439847 13439968 -214084610 + L1MDa LINE L1 3074 3197 -3343 1041 169 0 11 chr3 13440253 13440436 -214084142 + AluJb SINE Alu 122 302 -10 23 0 0 0 chr3 13440451 13440474 -214084104 + AT_rich Low_complexity Low_complexity 1 23 0 203 266 31 62 chr3 13440531 13440595 -214083983 - MIR SINE MIR -62 146 85 392 256 115 39 chr3 13440636 13440792 -214083786 + L2 LINE L2 3136 3303 -10 329 134 119 15 chr3 13440816 13440883 -214083695 - MLT1B LTR MaLR 0 390 317 1080 125 11 11 chr3 13440890 13441066 -214083512 - AluY SINE Alu 0 311 136 541 80 91 11 chr3 13441066 13441154 -214083424 - MLT1B LTR MaLR -58 332 238 874 141 0 15 chr3 13441417 13441552 -214083026 + FLAM_A SINE Alu 1 133 0 423 83 0 0 chr3 13441700 13441760 -214082818 + (TC)n Simple_repeat Simple_repeat 1 60 0 757 165 0 0 chr3 13441953 13442074 -214082504 + FLAM_C SINE Alu 1 121 -22 2286 64 0 10 chr3 13442084 13442381 -214082197 + AluY SINE Alu 1 294 -17 977 196 10 10 chr3 13443011 13443205 -214081373 + L1PB4 LINE L1 5949 6142 -14 2027 128 0 13 chr3 13443206 13443511 -214081067 - AluSx SINE Alu -11 301 1 5341 38 8 159 chr3 13443769 13444792 -214079786 - SVA Other Other -518 868 1 466 270 209 23 chr3 13444803 13445018 -214079560 - MIR SINE MIR -2 260 6 2013 116 13 16 chr3 13445061 13445372 -214079206 + AluSx SINE Alu 1 310 -2 945 221 61 35 chr3 13445393 13445540 -214079038 + MIR SINE MIR 5 162 -100 2031 160 39 16 chr3 13445540 13445921 -214078657 - MLT1B LTR MaLR 0 390 1 945 221 61 35 chr3 13445921 13446004 -214078574 + MIR SINE MIR 162 241 -21 437 318 79 9 chr3 13446340 13446554 -214078024 - MIR SINE MIR -1 261 33 1300 35 12 6 chr3 13446584 13446754 -214077824 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 2025 121 19 0 chr3 13446786 13447093 -214077485 - AluSq SINE Alu 0 313 1 617 216 54 11 chr3 13447186 13447371 -214077207 - MLT1K LTR MaLR -17 571 379 351 150 0 0 chr3 13447372 13447432 -214077146 + (TC)n Simple_repeat Simple_repeat 1 60 0 2153 116 3 0 chr3 13447432 13447742 -214076836 - AluSx SINE Alu -1 311 1 740 262 87 36 chr3 13447742 13448017 -214076561 - MLT1K LTR MaLR -162 426 138 225 0 0 0 chr3 13448028 13448053 -214076525 + (TG)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr3 13448055 13448086 -214076492 + (GA)n Simple_repeat Simple_repeat 2 32 0 450 204 34 109 chr3 13448472 13448619 -214075959 + L2 LINE L2 3137 3272 0 227 294 42 42 chr3 13448668 13448787 -214075791 + MIR3 SINE MIR 90 208 0 883 187 0 0 chr3 13449187 13449342 -214075236 - AluJ SINE Alu -11 291 137 270 234 56 56 chr3 13449461 13449568 -214075010 - MIR SINE MIR -63 145 39 292 301 0 0 chr3 13449689 13449782 -214074796 - L2 LINE L2 -10 3303 3211 1335 198 36 4 chr3 13450401 13450679 -214073899 - AluJb SINE Alu -21 291 5 812 165 0 8 chr3 13450695 13450828 -214073750 - AluJ SINE Alu -178 134 3 257 87 29 58 chr3 13451049 13451118 -214073460 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 1304 202 126 37 chr3 13451178 13451559 -214073019 - MLT1C LTR MaLR -52 415 1 2430 140 5 10 chr3 13451701 13452107 -214072471 - L1MB3 LINE L1 -1 6182 5779 247 222 0 0 chr3 13452283 13452328 -214072250 + MIR SINE MIR 187 231 -31 9457 135 89 43 chr3 13452499 13453882 -214070696 + L1MCa LINE L1 1 1492 -4934 215 30 0 30 chr3 13453882 13453915 -214070663 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9457 135 89 43 chr3 13453915 13454379 -214070199 + L1MCa LINE L1 1492 1933 -4493 1888 96 0 0 chr3 13454381 13454669 -214069909 + AluSx SINE Alu 35 322 0 1772 95 137 0 chr3 13454719 13454982 -214069596 - AluSg SINE Alu 0 300 2 243 0 0 0 chr3 13454984 13455011 -214069567 + (CTTG)n Simple_repeat Simple_repeat 3 29 0 10942 117 98 42 chr3 13455011 13455049 -214069529 - HUERS-P1 LTR ERV1 -2206 4057 4023 2422 74 0 0 chr3 13455049 13455360 -214069218 - AluY SINE Alu 0 311 1 2094 103 0 10 chr3 13455360 13455662 -214068916 - AluSq SINE Alu -14 299 1 10942 117 98 42 chr3 13455662 13455754 -214068824 - HUERS-P1 LTR ERV1 -2240 4023 3938 2364 68 7 0 chr3 13455754 13456062 -214068516 - AluY SINE Alu 0 311 2 10942 117 98 42 chr3 13456062 13456747 -214067831 - HUERS-P1 LTR ERV1 -2325 3938 3293 1390 143 20 143 chr3 13456747 13456962 -214067616 - AluYb8 SINE Alu 0 308 151 2276 66 3 0 chr3 13456962 13457249 -214067329 - AluY SINE Alu -23 288 1 1390 143 20 143 chr3 13457249 13457383 -214067195 - AluYb8 SINE Alu -157 151 2 10942 117 98 42 chr3 13457383 13457585 -214066993 - HUERS-P1 LTR ERV1 -2970 3293 3104 2202 108 0 0 chr3 13457585 13457891 -214066687 + AluSx SINE Alu 3 308 -4 10942 117 98 42 chr3 13457891 13458928 -214065650 - HUERS-P1 LTR ERV1 -3159 3104 874 637 149 19 19 chr3 13458929 13459083 -214065495 + CT-rich Low_complexity Low_complexity 1 154 0 9950 103 65 59 chr3 13459083 13459366 -214065212 - HUERS-P1 LTR ERV1 -4355 1908 1628 1659 111 111 0 chr3 13459366 13459636 -214064942 - AluSx SINE Alu -12 300 1 9950 103 65 59 chr3 13459636 13459786 -214064792 - HUERS-P1 LTR ERV1 -4635 1628 1480 2235 96 0 0 chr3 13459786 13460088 -214064490 - AluSx SINE Alu -10 302 1 9950 103 65 59 chr3 13460088 13460391 -214064187 - HUERS-P1 LTR ERV1 -4783 1480 1180 333 0 0 0 chr3 13460391 13460428 -214064150 + (GA)n Simple_repeat Simple_repeat 2 38 0 9950 103 65 59 chr3 13460428 13461427 -214063151 - HUERS-P1 LTR ERV1 -5083 1180 173 2397 69 0 23 chr3 13461427 13461731 -214062847 + AluY SINE Alu 1 297 -14 9950 103 65 59 chr3 13461731 13461906 -214062672 - HUERS-P1 LTR ERV1 -6090 173 1 3894 101 17 124 chr3 13461906 13461972 -214062606 - LTR8 LTR ERV1 0 691 620 2273 83 4 0 chr3 13461972 13462249 -214062329 + AluSp SINE Alu 3 280 -33 2611 49 0 10 chr3 13462250 13462555 -214062023 + AluY SINE Alu 1 302 -9 3894 101 17 124 chr3 13462555 13463173 -214061405 - LTR8 LTR ERV1 -71 620 95 6688 60 5 1 chr3 13463173 13464243 -214060335 + L1PA6 LINE L1 5079 6151 -3 3894 101 17 124 chr3 13464243 13464329 -214060249 - LTR8 LTR ERV1 -596 95 1 622 246 27 0 chr3 13464335 13464522 -214060056 + L1MC/D LINE L1 5254 5445 -725 * 856 213 127 8 chr3 13464513 13464781 -214059797 + L1ME1 LINE L1 5863 6162 -4 1694 184 4 0 chr3 13464836 13465142 -214059436 + AluJb SINE Alu 9 315 0 282 247 120 10 chr3 13465197 13465349 -214059229 + L1MC/D LINE L1 5428 5588 -609 2128 120 0 10 chr3 13465389 13465568 -214059010 - AluSx SINE Alu 0 312 136 2288 106 0 0 chr3 13465568 13465860 -214058718 - AluSq SINE Alu -21 292 1 2128 120 0 10 chr3 13465860 13465988 -214058590 - AluSx SINE Alu -176 136 8 1426 151 42 101 chr3 13465988 13466043 -214058535 - LTR54 LTR ERV1 -134 376 319 2399 77 0 26 chr3 13466043 13466354 -214058224 - AluY SINE Alu -8 303 1 1426 151 42 101 chr3 13466354 13466429 -214058149 - LTR54 LTR ERV1 -191 319 241 2149 126 0 40 chr3 13466429 13466754 -214057824 + AluSx SINE Alu 1 312 0 1426 151 42 101 chr3 13466754 13467001 -214057577 - LTR54 LTR ERV1 -269 241 19 1721 156 39 39 chr3 13467001 13467309 -214057269 - AluJb SINE Alu -4 308 1 1426 151 42 101 chr3 13467309 13467327 -214057251 - LTR54 LTR ERV1 -491 19 1 1947 154 0 7 chr3 13467402 13467707 -214056871 + AluJo SINE Alu 1 303 -9 632 224 51 67 chr3 13467919 13468232 -214056346 + L1MC5 LINE L1 7624 7931 -30 278 239 11 57 chr3 13468260 13468348 -214056230 + MIR SINE MIR 98 181 -81 2269 89 17 0 chr3 13468383 13468675 -214055903 - AluSg SINE Alu -13 297 1 2196 115 3 0 chr3 13468763 13469059 -214055519 - AluSx SINE Alu -15 297 1 293 263 13 13 chr3 13470571 13470647 -214053931 + MER5A DNA MER1_type 49 124 -65 2254 104 3 7 chr3 13470652 13470960 -214053618 - AluSx SINE Alu -5 307 1 1956 173 0 3 chr3 13470961 13471274 -214053304 - AluJo SINE Alu 0 312 1 420 106 91 0 chr3 13471469 13471535 -214053043 - HY1 scRNA scRNA -39 73 2 2060 118 3 20 chr3 13471546 13471704 -214052874 - AluSx SINE Alu -21 291 139 2337 94 0 3 chr3 13471704 13472001 -214052577 - AluSc SINE Alu -13 296 1 2060 118 3 20 chr3 13472001 13472138 -214052440 - AluSx SINE Alu -173 139 1 1039 162 241 9 chr3 13472354 13472582 -214051996 + AluSg1 SINE Alu 13 293 -16 1174 126 283 0 chr3 13472595 13472825 -214051753 + AluSx SINE Alu 1 295 -7 1546 174 11 4 chr3 13472825 13473106 -214051472 + AluSx SINE Alu 1 283 -29 2105 99 7 23 chr3 13474940 13475242 -214049336 + AluSg SINE Alu 1 297 -13 333 301 8 15 chr3 13475311 13475444 -214049134 - AluSg/x SINE Alu 0 302 171 27 62 0 0 chr3 13475473 13475521 -214049057 + AT_rich Low_complexity Low_complexity 1 48 0 1915 125 0 8 chr3 13476152 13476416 -214048162 - AluSx SINE Alu -50 262 1 185 189 0 0 chr3 13476424 13476461 -214048117 + L2 LINE L2 1750 1786 -1528 27 0 0 0 chr3 13477170 13477197 -214047381 + GC_rich Low_complexity Low_complexity 1 27 0 41 21 0 0 chr3 13477443 13477491 -214047087 + GC_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr3 13477906 13477935 -214046643 + GC_rich Low_complexity Low_complexity 1 29 0 871 76 0 0 chr3 13478269 13478374 -214046204 - AluJb SINE Alu -207 105 1 22 35 0 0 chr3 13478397 13478426 -214046152 + AT_rich Low_complexity Low_complexity 1 29 0 2353 88 3 16 chr3 13478524 13478832 -214045746 + AluSg SINE Alu 1 304 -6 889 97 16 8 chr3 13479698 13479822 -214044756 + AluSg SINE Alu 12 136 -174 2301 60 7 20 chr3 13479825 13480124 -214044454 + AluY SINE Alu 1 295 -16 189 0 0 0 chr3 13480131 13480152 -214044426 + (T)n Simple_repeat Simple_repeat 1 21 0 407 298 60 44 chr3 13480739 13480987 -214043591 - L2 LINE L2 -1 3312 3061 254 237 0 58 chr3 13481132 13481271 -214043307 + (CAAA)n Simple_repeat Simple_repeat 3 133 0 2274 97 7 0 chr3 13481899 13482199 -214042379 + AluSx SINE Alu 1 302 -10 1343 154 15 133 chr3 13482395 13482733 -214041845 - AluJb SINE Alu -4 298 1 338 309 62 27 chr3 13482927 13483073 -214041505 - MIR SINE MIR -46 162 11 362 249 92 31 chr3 13483683 13483792 -214040786 + MIR SINE MIR 37 138 -124 2250 90 0 23 chr3 13483792 13484093 -214040485 + AluSg SINE Alu 1 294 -16 362 249 92 31 chr3 13484093 13484193 -214040385 + MIR SINE MIR 138 256 -6 283 236 14 28 chr3 13484297 13484369 -214040209 + MER5A DNA MER1_type 32 102 -87 1244 211 86 11 chr3 13484433 13484713 -214039865 + AluJo SINE Alu 2 302 0 1889 154 14 0 chr3 13484922 13485215 -214039363 + AluSx SINE Alu 1 297 -15 2233 97 28 0 chr3 13485428 13485717 -214038861 - AluSc SINE Alu -12 297 1 276 164 0 55 chr3 13485718 13485773 -214038805 - MIR SINE MIR -98 164 113 2339 52 7 14 chr3 13485879 13486170 -214038408 + AluY SINE Alu 1 289 -22 1473 227 121 145 chr3 13486201 13486562 -214038016 + L2 LINE L2 1852 2220 -1093 1613 192 0 42 chr3 13486562 13486875 -214037703 + AluJo SINE Alu 1 300 -12 1473 227 121 145 chr3 13486875 13487005 -214037573 + L2 LINE L2 2220 2352 -961 746 183 43 32 chr3 13487005 13487191 -214037387 - AluJo SINE Alu -4 308 121 1473 227 121 145 chr3 13487191 13487431 -214037147 + L2 LINE L2 2352 2596 -717 2620 77 0 0 chr3 13487431 13487742 -214036836 - AluY SINE Alu 0 311 1 1473 227 121 145 chr3 13487742 13488337 -214036241 + L2 LINE L2 2596 3312 -1 201 318 16 0 chr3 13488338 13488401 -214036177 + L2 LINE L2 3247 3310 -3 245 109 22 0 chr3 13488492 13488538 -214036040 + GA-rich Low_complexity Low_complexity 2 48 0 189 107 0 0 chr3 13488533 13488561 -214036017 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 * 982 200 0 0 chr3 13490331 13490491 -214034087 - AluSg/x SINE Alu 0 312 153 347 217 47 28 chr3 13491247 13491353 -214033225 + MER103 DNA DNA 50 157 -9 333 68 0 0 chr3 13491483 13491527 -214033051 + Alu SINE Alu 1 44 -257 192 97 0 0 chr3 13491727 13491758 -214032820 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 296 265 53 69 chr3 13493873 13494062 -214030516 - MER20B DNA MER1_type -597 186 1 603 272 136 0 chr3 13494062 13494253 -214030325 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 13495160 13495185 -214029393 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 13496263 13496337 -214028241 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 13496419 13496445 -214028133 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 13496514 13496608 -214027970 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 13496919 13496950 -214027628 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 13497134 13497245 -214027333 - L2 LINE L2 -213 3059 2922 2293 52 29 0 chr3 13497254 13497554 -214027024 - AluY SINE Alu 0 308 1 292 274 18 35 chr3 13497585 13497698 -214026880 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 13499384 13499552 -214025026 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 13501200 13501324 -214023254 + MIR SINE MIR 125 253 -9 297 274 263 11 chr3 13501432 13501611 -214022967 + MIR SINE MIR 21 244 -18 2432 96 3 0 chr3 13502976 13503288 -214021290 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 13503481 13503612 -214020966 - AluJo SINE Alu -178 134 1 257 304 135 30 chr3 13503628 13503858 -214020720 - L1ME LINE L1 -308 5813 5560 359 67 0 33 chr3 13504140 13504200 -214020378 + (CAT)n Simple_repeat Simple_repeat 1 58 0 316 291 107 0 chr3 13504315 13504418 -214020160 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 13505072 13505116 -214019462 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 13505654 13505870 -214018708 + AluSg/x SINE Alu 77 290 -20 564 233 30 8 chr3 13506467 13506600 -214017978 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 13506715 13506879 -214017699 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 13508272 13508349 -214016229 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 13508323 13508381 -214016197 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 13508958 13509259 -214015319 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 13509653 13509884 -214014694 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 13511526 13511677 -214012901 - Charlie5 DNA MER1_type -92 2520 2354 2047 143 10 0 chr3 13511684 13511991 -214012587 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 13512026 13512090 -214012488 - Charlie5 DNA MER1_type -2461 163 97 2448 65 13 3 chr3 13512090 13512397 -214012181 + AluY SINE Alu 1 310 -1 248 217 47 47 chr3 13512397 13512438 -214012140 - Charlie5 DNA MER1_type -2526 98 58 1269 173 32 22 chr3 13512475 13512753 -214011825 - L1PA16 LINE L1 0 6166 5886 3445 85 42 24 chr3 13512774 13512817 -214011761 - L1MA3 LINE L1 -5 6300 6259 2392 87 7 0 chr3 13512817 13513115 -214011463 - AluSg SINE Alu -10 300 1 3445 85 42 24 chr3 13513115 13513625 -214010953 - L1MA3 LINE L1 -46 6259 5737 365 208 47 28 chr3 13513792 13513898 -214010680 + MER103 DNA DNA 50 157 -9 2135 87 7 4 chr3 13514028 13514304 -214010274 + AluSx SINE Alu 1 277 -35 2548 57 0 16 chr3 13514305 13514621 -214009957 + AluY SINE Alu 1 311 0 522 228 103 0 chr3 13514666 13514811 -214009767 + Charlie2 DNA MER1_type 36 195 -2587 214 254 0 0 chr3 13515123 13515178 -214009400 + MIR SINE MIR 90 144 -118 389 273 45 9 chr3 13515251 13515361 -214009217 + L2 LINE L2 3192 3305 -8 319 243 215 35 chr3 13515387 13515531 -214009047 - MIR SINE MIR -61 201 32 2091 109 0 4 chr3 13516028 13516304 -214008274 - AluSq SINE Alu -23 290 16 1802 145 84 10 chr3 13516600 13516911 -214007667 + MER1B DNA MER1_type 6 339 0 2190 105 0 7 chr3 13517580 13517875 -214006703 + AluSg SINE Alu 16 308 -2 2415 88 3 0 chr3 13517936 13518233 -214006345 - AluSg SINE Alu -12 298 1 633 283 62 52 chr3 13518831 13518951 -214005627 - MER113 DNA MER1_type? -5 516 399 2288 125 0 0 chr3 13518951 13519263 -214005315 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 13519263 13519467 -214005111 - MER113 DNA MER1_type? -122 399 189 2142 130 0 0 chr3 13519467 13519759 -214004819 + AluSq SINE Alu 1 292 -21 439 303 119 18 chr3 13520173 13520391 -214004187 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 13520401 13520450 -214004128 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 13520450 13520747 -214003831 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 13520747 13520908 -214003670 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 13521204 13521229 -214003349 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 0 0 chr3 13521284 13521599 -214002979 - AluSc SINE Alu 0 315 1 1677 159 35 14 chr3 13521601 13521891 -214002687 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13522054 13522077 -214002501 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13522706 13522767 -214001811 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 13522810 13522946 -214001632 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 13522986 13523087 -214001491 - L2 LINE L2 0 3272 3158 2508 79 0 0 chr3 13523230 13523533 -214001045 - AluY SINE Alu -8 303 1 2153 109 0 7 chr3 13523789 13524082 -214000496 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 13524082 13524380 -214000198 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 13524391 13524533 -214000045 + L2 LINE L2 3171 3311 -2 220 376 24 0 chr3 13524637 13524762 -213999816 - L2 LINE L2 -470 2844 2717 2162 99 25 3 chr3 13524907 13525191 -213999387 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 13525199 13525500 -213999078 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 13525500 13525670 -213998908 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 13525670 13525685 -213998893 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 13525685 13525976 -213998602 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 13525976 13526015 -213998563 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 13526294 13526382 -213998196 - L2 LINE L2 -1077 2237 2146 464 194 20 0 chr3 13527912 13528010 -213996568 - MIR SINE MIR -32 230 131 574 293 0 7 chr3 13528039 13528186 -213996392 - MIR SINE MIR -106 156 11 393 312 130 9 chr3 13528347 13528562 -213996016 + MIR SINE MIR 2 242 -20 660 267 21 69 chr3 13529304 13529544 -213995034 + MIR SINE MIR 30 259 -3 247 336 80 8 chr3 13529559 13529684 -213994894 - L2 LINE L2 -1 3312 3179 214 246 46 31 chr3 13530067 13530132 -213994446 - L2 LINE L2 -250 3022 2957 2211 121 3 3 chr3 13531058 13531364 -213993214 + AluSx SINE Alu 1 306 -6 2024 132 0 7 chr3 13531369 13531650 -213992928 + AluSx SINE Alu 16 294 -18 2578 63 0 0 chr3 13531650 13531952 -213992626 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 13532257 13532411 -213992167 + L2 LINE L2 2944 3091 -181 424 257 118 0 chr3 13533369 13533513 -213991065 - L1ME3A LINE L1 -32 6138 5978 241 299 259 6 chr3 13533524 13533698 -213990880 - MIR SINE MIR -26 236 19 187 274 53 80 chr3 13533654 13533767 -213990811 + MIR SINE MIR 27 136 -72 * 510 284 82 64 chr3 13533830 13533956 -213990622 - MLT1J1 LTR MaLR -112 334 212 2512 68 0 13 chr3 13533956 13534266 -213990312 + AluY SINE Alu 1 306 -5 510 284 82 64 chr3 13534266 13534467 -213990111 - MLT1J1 LTR MaLR -234 212 1 191 286 0 0 chr3 13534471 13534520 -213990058 + L2 LINE L2 3213 3261 -11 258 303 53 75 chr3 13535050 13535301 -213989277 + L1ME4a LINE L1 5687 5931 -190 2352 109 3 0 chr3 13535301 13535613 -213988965 - AluSq SINE Alu 0 313 1 258 303 53 75 chr3 13535613 13535681 -213988897 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 13535705 13535736 -213988842 + AT_rich Low_complexity Low_complexity 1 31 0 230 267 50 75 chr3 13536255 13536375 -213988203 + MER5B DNA MER1_type 7 123 -55 2561 65 0 3 chr3 13536394 13536700 -213987878 - AluY SINE Alu -6 305 1 973 102 0 0 chr3 13536751 13536879 -213987699 + AluSp/q SINE Alu 176 303 -10 344 182 23 11 chr3 13536879 13536967 -213987611 - L1MB2 LINE L1 -36 6135 6047 247 280 10 0 chr3 13536992 13537092 -213987486 - L1MC4 LINE L1 -1 8041 7941 1300 102 0 0 chr3 13537389 13537555 -213987023 - AluSg/x SINE Alu -14 296 131 510 320 93 0 chr3 13537710 13537904 -213986674 - MIR SINE MIR 0 262 51 1895 156 19 10 chr3 13538058 13538365 -213986213 + AluJo SINE Alu 1 310 -2 234 347 75 0 chr3 13538397 13538544 -213986034 + MIR3 SINE MIR 40 197 -11 422 250 191 0 chr3 13538691 13538843 -213985735 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 13538859 13538899 -213985679 + (TG)n Simple_repeat Simple_repeat 2 41 0 700 175 8 0 chr3 13538912 13539032 -213985546 - FLAM_C SINE Alu -12 121 1 1742 168 35 3 chr3 13539054 13539339 -213985239 - AluJo SINE Alu -18 294 1 711 123 9 9 chr3 13539340 13539454 -213985124 - L1MC1 LINE L1 -9 6324 6211 364 309 80 55 chr3 13540378 13540531 -213984047 - MLT1L LTR MaLR -10 605 457 1162 33 26 0 chr3 13540531 13540683 -213983895 - L1PA5 LINE L1 0 6154 5999 364 309 80 55 chr3 13540683 13540959 -213983619 - MLT1L LTR MaLR -158 457 176 878 294 104 30 chr3 13541384 13541789 -213982789 + MLT1K LTR MaLR 144 578 -10 497 201 148 58 chr3 13542017 13542206 -213982372 - MIR SINE MIR -26 236 31 407 235 41 0 chr3 13542220 13542318 -213982260 - MER91C DNA MER1_type -38 102 1 252 369 76 0 chr3 13542588 13542745 -213981833 - MIR SINE MIR -14 248 80 2727 48 0 0 chr3 13543507 13543818 -213980760 + AluY SINE Alu 1 311 0 301 285 180 48 chr3 13543836 13544142 -213980436 - L2 LINE L2 -159 3113 2763 716 181 30 91 chr3 13544142 13544256 -213980322 + MER5A DNA MER1_type 1 99 -90 2336 95 7 0 chr3 13544256 13544551 -213980027 + AluSx SINE Alu 1 297 -15 716 181 30 91 chr3 13544551 13544635 -213979943 + MER5A DNA MER1_type 99 187 -2 301 285 180 48 chr3 13544635 13544676 -213979902 - L2 LINE L2 -509 2763 2729 1810 159 36 13 chr3 13544927 13545228 -213979350 - AluSx SINE Alu -4 308 1 705 83 0 10 chr3 13545228 13545324 -213979254 - AluSq/x SINE Alu -177 135 41 304 192 26 13 chr3 13545397 13545475 -213979103 + L1ME4a LINE L1 5946 6024 -97 238 228 38 25 chr3 13545924 13546003 -213978575 + MLT1K LTR MaLR 497 576 -12 2436 87 7 3 chr3 13546193 13546503 -213978075 + AluSx SINE Alu 1 311 -1 310 313 90 0 chr3 13546780 13546914 -213977664 - MIR SINE MIR -31 231 86 2126 139 13 3 chr3 13546986 13547336 -213977242 + AluJo SINE Alu 1 353 0 264 290 93 0 chr3 13548053 13548160 -213976418 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 13549040 13549104 -213975474 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 13550280 13550306 -213974272 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 13550369 13550460 -213974118 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 547 279 118 60 chr3 13550950 13551530 -213973048 - L2 LINE L2 -45 3227 2612 300 289 240 0 chr3 13551708 13551812 -213972766 - MER5A DNA MER1_type 0 189 61 252 247 68 14 chr3 13551825 13551898 -213972680 - MER5A DNA MER1_type -82 107 31 1286 217 173 8 chr3 13551930 13552294 -213972284 - MLT1K LTR MaLR -43 545 122 321 299 31 0 chr3 13552623 13552720 -213971858 + MIR SINE MIR 89 188 -74 2262 85 27 10 chr3 13553068 13553361 -213971217 - AluSx SINE Alu -14 298 1 264 261 15 0 chr3 13553380 13553445 -213971133 - MIR SINE MIR -85 123 58 1736 83 4 18 chr3 13553470 13553699 -213970879 + AluSp SINE Alu 88 313 0 2178 108 3 54 chr3 13553703 13554019 -213970559 + AluSp SINE Alu 2 301 -12 663 229 14 0 chr3 13554038 13554182 -213970396 - MIR SINE MIR -12 250 105 311 267 50 40 chr3 13554202 13554303 -213970275 - L2 LINE L2 -49 3223 3122 2211 120 0 3 chr3 13554318 13554610 -213969968 - AluSq SINE Alu -22 291 1 928 180 0 44 chr3 13554892 13555075 -213969503 - FAM SINE Alu 0 175 1 219 262 16 0 chr3 13555463 13555524 -213969054 + MIR SINE MIR 82 143 -65 245 232 29 94 chr3 13555620 13555649 -213968929 - L1ME4a LINE L1 -1 6120 6091 1942 115 38 54 chr3 13555649 13555963 -213968615 + AluSq SINE Alu 1 309 -4 245 232 29 94 chr3 13555963 13556071 -213968507 - L1ME4a LINE L1 -30 6091 5992 522 290 65 9 chr3 13556093 13556307 -213968271 + MIR SINE MIR 19 244 -18 192 164 0 49 chr3 13556911 13556972 -213967606 + CT-rich Low_complexity Low_complexity 1 58 0 1084 226 91 47 chr3 13556994 13557424 -213967154 - L2 LINE L2 -20 3293 2845 2443 88 0 10 chr3 13558046 13558353 -213966225 - AluSg1 SINE Alu -5 304 1 709 340 76 18 chr3 13559204 13559384 -213965194 - L2 LINE L2 -433 2881 2713 2288 118 0 0 chr3 13559384 13559680 -213964898 + AluSx SINE Alu 1 296 -16 709 340 76 18 chr3 13559680 13560054 -213964524 - L2 LINE L2 -601 2713 2295 732 143 110 0 chr3 13560061 13560215 -213964363 + MIR SINE MIR 90 260 -2 225 292 22 0 chr3 13560216 13560305 -213964273 + (TA)n Simple_repeat Simple_repeat 1 91 0 1834 146 52 7 chr3 13561995 13562283 -213962295 - AluJo SINE Alu -11 301 1 185 283 33 75 chr3 13562290 13562410 -213962168 - MIR SINE MIR -44 218 104 451 302 43 0 chr3 13562576 13562715 -213961863 + MIR SINE MIR 26 170 -92 2133 108 52 0 chr3 13562787 13563073 -213961505 + AluSx SINE Alu 1 301 -11 216 293 13 0 chr3 13564763 13564838 -213959740 + (TA)n Simple_repeat Simple_repeat 1 76 0 732 143 110 0 chr3 13564853 13565007 -213959571 - MIR SINE MIR -2 260 90 672 297 56 25 chr3 13565014 13565374 -213959204 + L2 LINE L2 2295 2665 -649 2458 84 3 0 chr3 13565386 13565682 -213958896 - AluSp SINE Alu -16 297 1 690 187 0 22 chr3 13565682 13565816 -213958762 - AluJo/FLAM SINE Alu -169 133 3 934 312 130 24 chr3 13565818 13566633 -213957945 + L2 LINE L2 2248 3214 -99 305 221 39 39 chr3 13567092 13567196 -213957382 - MIR SINE MIR -78 184 81 2195 189 35 36 chr3 13567415 13567935 -213956643 + LTR40a LTR ERVL 1 519 0 387 267 0 11 chr3 13568235 13568325 -213956253 - L1MC4 LINE L1 -1339 6703 6615 * 392 286 0 11 chr3 13568281 13568372 -213956206 + L1MC4 LINE L1 6614 6703 -1339 * 398 300 0 0 chr3 13568332 13568422 -213956156 - L1MC4 LINE L1 -1339 6703 6614 2299 125 0 0 chr3 13568445 13568749 -213955829 - AluSx SINE Alu -8 304 1 294 309 196 33 chr3 13568753 13568945 -213955633 - L2 LINE L2 -9 3304 3145 2246 102 0 0 chr3 13568945 13569228 -213955350 + AluSq SINE Alu 1 283 -30 450 0 0 0 chr3 13569228 13569278 -213955300 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 294 309 196 33 chr3 13569278 13569566 -213955012 - L2 LINE L2 -167 3146 2738 253 309 228 0 chr3 13569740 13569863 -213954715 - MIR3 SINE MIR -27 181 31 936 166 96 0 chr3 13569899 13570086 -213954492 - MER3 DNA MER1_type -4 205 1 1712 163 54 0 chr3 13570154 13570448 -213954130 + AluJo SINE Alu 1 310 -2 2440 93 0 0 chr3 13570507 13570808 -213953770 - AluSx SINE Alu -11 301 1 290 342 0 0 chr3 13570892 13570968 -213953610 - L2 LINE L2 0 3313 3238 270 250 24 113 chr3 13571025 13571149 -213953429 - L2 LINE L2 -225 3047 2935 1793 175 3 16 chr3 13571183 13571486 -213953092 + AluJo SINE Alu 1 299 -13 382 197 7 132 chr3 13571697 13571773 -213952805 - MIR SINE MIR -53 209 160 2265 98 6 31 chr3 13571773 13572090 -213952488 + AluSx SINE Alu 1 309 -3 382 197 7 132 chr3 13572090 13572165 -213952413 - MIR SINE MIR -102 160 77 198 349 94 7 chr3 13572271 13572420 -213952158 + L2 LINE L2 2871 3032 -240 327 353 41 8 chr3 13572785 13572907 -213951671 + L2 LINE L2 3119 3244 -28 1085 235 30 0 chr3 13572940 13573174 -213951404 - MIR SINE MIR 0 262 22 741 47 16 70 chr3 13573500 13573628 -213950950 + L1PA13 LINE L1 6042 6162 -1 411 285 44 61 chr3 13573704 13573932 -213950646 - L1MEc LINE L1 -4000 2396 2173 231 36 0 0 chr3 13573974 13574002 -213950576 + (TA)n Simple_repeat Simple_repeat 2 29 0 2299 80 0 10 chr3 13574002 13574291 -213950287 - AluSg SINE Alu -24 286 1 276 164 0 55 chr3 13574397 13574452 -213950126 + MIR SINE MIR 113 164 -98 2233 97 28 0 chr3 13574453 13574742 -213949836 + AluSc SINE Alu 1 297 -12 1889 154 14 0 chr3 13574955 13575248 -213949330 - AluSx SINE Alu -15 297 1 200 35 35 0 chr3 13575299 13575328 -213949250 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1356 207 74 14 chr3 13575450 13575735 -213948843 - AluJo SINE Alu -6 306 5 283 236 14 28 chr3 13575802 13575874 -213948704 - MER5A DNA MER1_type -87 102 32 362 249 92 31 chr3 13575978 13576078 -213948500 - MIR SINE MIR -6 256 164 2250 90 0 23 chr3 13576078 13576379 -213948199 - AluSg SINE Alu -16 294 1 362 249 92 31 chr3 13576379 13576488 -213948090 - MIR SINE MIR -98 164 37 338 309 62 27 chr3 13577098 13577244 -213947334 + MIR SINE MIR 11 162 -46 1343 154 15 133 chr3 13577438 13577776 -213946802 + AluJb SINE Alu 1 298 -4 2274 97 7 0 chr3 13577972 13578272 -213946306 - AluSx SINE Alu -10 302 1 2292 105 3 7 chr3 13578787 13579091 -213945487 - AluSx SINE Alu -9 303 1 1802 145 84 10 chr3 13579743 13580054 -213944524 - MER1B DNA MER1_type 0 339 6 2091 109 0 4 chr3 13580350 13580626 -213943952 + AluSq SINE Alu 16 290 -23 319 243 215 35 chr3 13581123 13581267 -213943311 + MIR SINE MIR 32 201 -61 389 273 45 9 chr3 13581293 13581403 -213943175 - L2 LINE L2 -8 3305 3192 214 254 0 0 chr3 13581476 13581531 -213943047 - MIR SINE MIR -118 144 90 522 228 103 0 chr3 13581843 13581988 -213942590 - Charlie2 DNA MER1_type -2667 195 36 2583 57 0 13 chr3 13582033 13582348 -213942230 - AluY SINE Alu 0 311 1 2170 87 7 0 chr3 13582349 13582624 -213941954 - AluSx SINE Alu -35 277 1 365 208 47 28 chr3 13582754 13582860 -213941718 - MER103 DNA DNA -9 157 50 3417 87 42 24 chr3 13583027 13583537 -213941041 + L1MA3 LINE L1 5737 6259 -46 1540 165 20 10 chr3 13583537 13583834 -213940744 + AluSg SINE Alu 1 300 -10 3417 87 42 24 chr3 13583834 13583877 -213940701 + L1MA3 LINE L1 6259 6300 -5 1253 176 32 22 chr3 13583898 13584176 -213940402 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 13584213 13584254 -213940324 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 13584254 13584561 -213940017 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 13584561 13584625 -213939953 + Charlie5 DNA MER1_type 97 163 -2461 2047 143 10 0 chr3 13584660 13584967 -213939611 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 13584974 13585125 -213939453 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 13586767 13586998 -213937580 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 13587392 13587693 -213936885 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 13588270 13588328 -213936250 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 13588302 13588379 -213936199 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 13589772 13589936 -213934642 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 13590051 13590184 -213934394 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 13590781 13590997 -213933581 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 13591536 13591580 -213932998 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 13592234 13592337 -213932241 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 13592452 13592513 -213932065 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 13592795 13593025 -213931553 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 13593041 13593172 -213931406 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 13593365 13593677 -213930901 + AluSp SINE Alu 1 313 0 297 274 263 11 chr3 13595041 13595220 -213929358 - MIR SINE MIR -18 244 21 281 323 57 16 chr3 13595328 13595452 -213929126 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 13597100 13597268 -213927310 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 13598955 13599068 -213925510 + L2 LINE L2 2716 2826 -488 2294 52 29 0 chr3 13599099 13599399 -213925179 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 13599408 13599519 -213925059 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 13599703 13599734 -213924844 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 13600045 13600139 -213924439 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 13600208 13600234 -213924344 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 13600316 13600390 -213924188 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 13601468 13601493 -213923085 + GC_rich Low_complexity Low_complexity 1 25 0 603 272 136 0 chr3 13602400 13602591 -213921987 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 13602591 13602780 -213921798 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 13605113 13605225 -213919353 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 13605809 13606108 -213918470 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 13608090 13608199 -213916379 + FLAM_C SINE Alu 9 117 -26 379 291 60 15 chr3 13611456 13611590 -213912988 + MIR3 SINE MIR 44 183 -25 880 172 156 98 chr3 13611693 13611897 -213912681 - MER2 DNA MER2_type 0 345 114 1534 184 124 10 chr3 13611897 13612283 -213912295 - Tigger2a DNA MER2_type -4 430 1 880 172 156 98 chr3 13612283 13612404 -213912174 - MER2 DNA MER2_type -231 114 1 320 260 57 51 chr3 13612449 13612687 -213911891 - MLT1K LTR MaLR -149 466 198 302 275 99 47 chr3 13612724 13612895 -213911683 + MIR SINE MIR 18 197 -65 683 208 8 0 chr3 13612897 13613022 -213911556 + FLAM_C SINE Alu 2 127 -16 305 55 0 96 chr3 13613027 13613100 -213911478 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 2067 74 0 49 chr3 13614751 13615035 -213909543 + AluSq SINE Alu 1 270 -43 2421 66 10 13 chr3 13617422 13617724 -213906854 + AluSp SINE Alu 1 301 -12 245 362 53 32 chr3 13618022 13618210 -213906368 + MIR SINE MIR 4 195 -67 1937 116 47 4 chr3 13619343 13619618 -213904960 - AluSg SINE Alu -1 309 23 1545 148 168 0 chr3 13619818 13620074 -213904504 + AluJb SINE Alu 1 299 -13 187 269 19 163 chr3 13621123 13621258 -213903320 - MER5A DNA MER1_type -1 188 78 1957 132 35 14 chr3 13621258 13621547 -213903031 - AluSx SINE Alu -17 295 1 187 269 19 163 chr3 13621547 13621571 -213903007 - MER5A DNA MER1_type -111 78 52 456 270 109 17 chr3 13621876 13622050 -213902528 - MIR SINE MIR 0 262 73 26 30 0 0 chr3 13622300 13622333 -213902245 + GC_rich Low_complexity Low_complexity 1 33 0 223 186 0 34 chr3 13622415 13622474 -213902104 + (CCG)n Simple_repeat Simple_repeat 2 58 0 189 107 0 0 chr3 13624787 13624815 -213899763 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 * 245 109 22 0 chr3 13624810 13624856 -213899722 + CT-rich Low_complexity Low_complexity 2 48 0 201 318 16 0 chr3 13624947 13625010 -213899568 - L2 LINE L2 -3 3310 3247 1510 229 129 139 chr3 13625011 13625606 -213898972 - L2 LINE L2 -1 3312 2713 2620 77 0 0 chr3 13625606 13625917 -213898661 + AluY SINE Alu 1 311 0 1510 229 129 139 chr3 13625917 13626157 -213898421 - L2 LINE L2 -600 2713 2472 746 183 43 32 chr3 13626157 13626343 -213898235 + AluJo SINE Alu 121 308 -4 1510 229 129 139 chr3 13626343 13626473 -213898105 - L2 LINE L2 -841 2472 2342 1613 192 0 42 chr3 13626473 13626786 -213897792 - AluJo SINE Alu -12 300 1 1510 229 129 139 chr3 13626786 13627178 -213897400 - L2 LINE L2 -971 2342 1799 2506 38 3 7 chr3 13627178 13627468 -213897110 - AluY SINE Alu -22 289 1 1510 229 129 139 chr3 13627468 13627518 -213897060 - L2 LINE L2 -1514 1799 1750 2113 111 27 24 chr3 13627526 13627824 -213896754 + AluSq SINE Alu 1 299 -14 2584 57 0 7 chr3 13627827 13628128 -213896450 + AluY SINE Alu 1 299 -12 265 307 40 62 chr3 13628128 13628278 -213896300 + MIR SINE MIR 47 192 -70 383 249 93 78 chr3 13628278 13628311 -213896267 + MIR SINE MIR 2 33 -229 2005 141 0 10 chr3 13628311 13628609 -213895969 + AluJo SINE Alu 1 295 -17 383 249 93 78 chr3 13628609 13628832 -213895746 + MIR SINE MIR 33 262 0 638 224 0 7 chr3 13629676 13629819 -213894759 - FLAM_C SINE Alu 0 143 2 2478 82 3 0 chr3 13629916 13630220 -213894358 - AluSx SINE Alu -7 305 1 406 35 0 0 chr3 13630436 13630493 -213894085 - AluY SINE Alu -7 305 249 715 233 86 65 chr3 13630564 13630796 -213893782 - MIR SINE MIR -25 237 1 413 188 178 10 chr3 13631432 13631533 -213893045 + L2 LINE L2 3195 3312 -1 655 201 82 0 chr3 13631605 13631764 -213892814 - MIR SINE MIR -1 261 90 1075 124 162 5 chr3 13632162 13632347 -213892231 + AluJb SINE Alu 85 298 -14 407 174 14 0 chr3 13633331 13633400 -213891178 - AluS SINE Alu -229 74 5 721 93 0 0 chr3 13633411 13633508 -213891070 - AluSg/x SINE Alu -17 292 196 2407 95 0 0 chr3 13633521 13633815 -213890763 - AluSg SINE Alu -16 294 1 10078 108 12 35 chr3 13633815 13634114 -213890464 - Tigger1 DNA MER2_type -823 1595 1291 2216 121 3 0 chr3 13634114 13634419 -213890159 - AluSg1 SINE Alu -3 306 1 10078 108 12 35 chr3 13634419 13635232 -213889346 - Tigger1 DNA MER2_type -1127 1291 461 2902 16 0 3 chr3 13635232 13635548 -213889030 - AluYb8 SINE Alu -3 315 1 10078 108 12 35 chr3 13635548 13635577 -213889001 - Tigger1 DNA MER2_type -1957 461 433 802 150 0 15 chr3 13635577 13635710 -213888868 - FLAM_C SINE Alu -2 131 1 10078 108 12 35 chr3 13635710 13636199 -213888379 - Tigger1 DNA MER2_type -1985 433 1 200 182 0 0 chr3 13636279 13636312 -213888266 + GA-rich Low_complexity Low_complexity 3 35 0 1993 114 14 14 chr3 13636333 13636646 -213887932 + AluSx SINE Alu 1 312 0 2228 121 0 10 chr3 13636830 13637135 -213887443 - AluSx SINE Alu -10 302 1 1800 150 21 0 chr3 13637161 13637441 -213887137 - AluJo SINE Alu -26 286 1 1211 248 128 20 chr3 13637944 13638307 -213886271 + L1ME3A LINE L1 5572 5985 -185 2457 82 0 0 chr3 13638307 13638601 -213885977 + AluY SINE Alu 1 294 -17 1211 248 128 20 chr3 13638601 13638644 -213885934 + L1ME3A LINE L1 5985 6022 -148 1826 154 20 30 chr3 13638738 13639036 -213885542 + AluJb SINE Alu 1 295 -17 535 265 47 41 chr3 13639053 13639260 -213885318 + L1MC4a LINE L1 5706 5915 -253 254 325 8 16 chr3 13639624 13639750 -213884828 + L1ME4a LINE L1 5603 5727 -394 245 229 36 24 chr3 13639751 13639834 -213884744 + GA-rich Low_complexity Low_complexity 1 84 0 349 316 75 8 chr3 13639867 13640000 -213884578 + L1ME4a LINE L1 5777 5918 -203 856 264 53 24 chr3 13640022 13640268 -213884310 - MIR SINE MIR 0 262 10 195 42 0 0 chr3 13640567 13640591 -213883987 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 2059 144 16 0 chr3 13640598 13640903 -213883675 - AluSq SINE Alu -3 310 1 877 267 18 14 chr3 13641198 13641475 -213883103 + L2 LINE L2 2430 2707 -607 1003 155 202 19 chr3 13641486 13641693 -213882885 + AluSg1 SINE Alu 1 247 -57 1496 135 0 5 chr3 13641693 13641908 -213882670 + AluJo SINE Alu 85 298 -14 239 227 177 35 chr3 13641929 13642070 -213882508 + L2 LINE L2 2751 2911 -403 594 329 156 18 chr3 13642499 13643237 -213881341 + L2 LINE L2 2040 2879 -435 568 296 137 17 chr3 13643302 13643500 -213881078 - MIR SINE MIR 0 262 31 2365 108 0 3 chr3 13643500 13643805 -213880773 - AluSx SINE Alu -8 304 1 568 296 137 17 chr3 13643805 13643839 -213880739 - MIR SINE MIR -231 31 2 216 191 64 0 chr3 13643887 13643934 -213880644 - L2 LINE L2 0 3272 3223 2247 116 7 3 chr3 13643978 13644279 -213880299 + AluSq SINE Alu 1 302 -11 1395 284 89 5 chr3 13644545 13645154 -213879424 + L1MC4a LINE L1 5260 5919 -1889 910 194 6 0 chr3 13645158 13645328 -213879250 + MLT1F1 LTR MaLR 5 175 -392 1437 164 32 147 chr3 13645328 13645425 -213879153 + L1MB8 LINE L1 4675 4782 -1364 1651 182 36 26 chr3 13645425 13645733 -213878845 + AluJo SINE Alu 1 311 -1 1437 164 32 147 chr3 13645733 13645760 -213878818 + L1MB8 LINE L1 4782 4810 -1336 2328 82 3 14 chr3 13645760 13646053 -213878525 - AluSg SINE Alu -19 291 2 1437 164 32 147 chr3 13646053 13646302 -213878276 + L1MB8 LINE L1 4810 4989 -1157 2148 135 0 0 chr3 13646302 13646598 -213877980 + AluSx SINE Alu 1 296 -16 1437 164 32 147 chr3 13646598 13646684 -213877894 + L1MB8 LINE L1 4989 5083 -1063 2894 165 9 55 chr3 13646684 13646816 -213877762 + L1MB8 LINE L1 5561 5697 -481 2240 123 0 0 chr3 13646816 13647116 -213877462 + AluSx SINE Alu 1 300 -12 2894 165 9 55 chr3 13647116 13647339 -213877239 + L1MB8 LINE L1 5697 5929 -249 2055 143 7 7 chr3 13647339 13647639 -213876939 + AluJo SINE Alu 3 302 -10 2894 165 9 55 chr3 13647639 13647920 -213876658 + L1MB8 LINE L1 5929 6169 -9 855 195 42 83 chr3 13647982 13648032 -213876546 + MLT1F1 LTR MaLR 313 364 -203 2549 66 3 0 chr3 13648032 13648337 -213876241 + AluY SINE Alu 1 306 -5 855 195 42 83 chr3 13648337 13648527 -213876051 + MLT1F1 LTR MaLR 364 543 -24 1946 155 30 3 chr3 13648542 13648838 -213875740 - AluJb SINE Alu -8 304 1 243 81 0 0 chr3 13648838 13648875 -213875703 + MLT1F1 LTR MaLR 530 566 -1 24 32 0 0 chr3 13649088 13649119 -213875459 + AT_rich Low_complexity Low_complexity 1 31 0 2131 130 3 0 chr3 13649158 13649473 -213875105 + AluSx SINE Alu 1 312 0 521 265 51 95 chr3 13649612 13649906 -213874672 + L2 LINE L2 2981 3261 -11 385 301 16 38 chr3 13649933 13650116 -213874462 + GA-rich Low_complexity Low_complexity 2 180 0 733 163 23 0 chr3 13650212 13650341 -213874237 + AluJo/FLAM SINE Alu 2 133 -169 418 96 0 10 chr3 13650341 13650498 -213874080 + AluSx SINE Alu 44 247 -62 1170 204 23 9 chr3 13650498 13650543 -213874035 + AluJo SINE Alu 85 128 -184 258 32 0 0 chr3 13650543 13650574 -213874004 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1170 204 23 9 chr3 13650574 13650748 -213873830 + AluJo SINE Alu 128 307 -5 2455 96 0 3 chr3 13650846 13651159 -213873419 + AluSx SINE Alu 1 312 0 248 288 123 0 chr3 13651264 13651337 -213873241 + L2 LINE L2 3229 3310 -3 348 211 150 54 chr3 13651361 13651508 -213873070 + MIR3 SINE MIR 36 196 -12 472 307 104 25 chr3 13651600 13651805 -213872773 - MIR SINE MIR 0 262 34 2063 155 0 0 chr3 13651805 13652102 -213872476 - AluJo SINE Alu -15 297 1 472 307 104 25 chr3 13652102 13652137 -213872441 - MIR SINE MIR -228 34 3 247 276 21 22 chr3 13652303 13652464 -213872114 + MIR SINE MIR 26 250 -12 2125 130 0 0 chr3 13652592 13652909 -213871669 - AluJb SINE Alu 0 312 1 652 254 27 22 chr3 13652916 13653101 -213871477 + MIR SINE MIR 29 214 -48 1484 266 133 38 chr3 13653446 13653980 -213870598 + MLT1K LTR MaLR 4 588 0 2404 83 0 13 chr3 13654217 13654517 -213870061 + AluSq SINE Alu 1 296 -17 943 129 0 14 chr3 13654696 13654835 -213869743 - AluJo SINE Alu -175 137 1 193 381 48 8 chr3 13654869 13654995 -213869583 - MIR SINE MIR -55 153 23 418 220 73 84 chr3 13655137 13655328 -213869250 + MIR3 SINE MIR 16 204 -4 702 324 139 19 chr3 13655597 13656079 -213868499 + MARNA DNA Mariner 34 573 -13 386 282 81 24 chr3 13656591 13656715 -213867863 - MIR SINE MIR -59 149 19 237 252 0 73 chr3 13657489 13657640 -213866938 + G-rich Low_complexity Low_complexity 1 140 0 21 89 0 0 chr3 13658411 13658467 -213866111 + GC_rich Low_complexity Low_complexity 1 56 0 23 86 0 0 chr3 13658657 13658715 -213865863 + GC_rich Low_complexity Low_complexity 1 58 0 287 301 0 0 chr3 13659189 13659282 -213865296 + L2 LINE L2 3211 3303 -10 240 224 69 13 chr3 13659415 13659510 -213865068 + MIR SINE MIR 49 145 -63 847 187 0 0 chr3 13659629 13659784 -213864794 + FRAM SINE Alu 1 155 -11 211 294 42 42 chr3 13660184 13660303 -213864275 - MIR3 SINE MIR 0 208 90 420 224 27 102 chr3 13660352 13660499 -213864079 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 13660885 13660916 -213863662 + (TC)n Simple_repeat Simple_repeat 2 32 0 369 0 0 0 chr3 13660918 13660959 -213863619 + (CA)n Simple_repeat Simple_repeat 1 41 0 740 262 87 36 chr3 13660970 13661245 -213863333 + MLT1K LTR MaLR 138 426 -162 2153 102 0 0 chr3 13661245 13661620 -213862958 + AluSx SINE Alu 1 311 -1 599 222 54 11 chr3 13661620 13661805 -213862773 + MLT1K LTR MaLR 379 571 -17 1984 122 20 0 chr3 13661898 13662384 -213862194 + AluSq SINE Alu 1 313 0 437 318 79 9 chr3 13662416 13662630 -213861948 + MIR SINE MIR 33 261 -1 945 221 61 35 chr3 13662966 13663049 -213861529 - MIR SINE MIR -21 241 162 2055 158 39 16 chr3 13663049 13663430 -213861148 + MLT1B LTR MaLR 1 390 0 945 221 61 35 chr3 13663430 13663577 -213861001 - MIR SINE MIR -100 162 5 2005 116 13 16 chr3 13663598 13663908 -213860670 - AluSx SINE Alu -3 309 1 466 270 209 23 chr3 13663951 13664166 -213860412 + MIR SINE MIR 6 260 -2 5390 36 8 159 chr3 13664177 13665200 -213859378 + SVA Other Other 1 868 -518 2027 128 0 13 chr3 13665458 13665763 -213858815 + AluSx SINE Alu 1 301 -11 977 196 10 10 chr3 13665764 13665958 -213858620 - L1PB4 LINE L1 -14 6142 5949 2300 61 0 10 chr3 13666588 13666885 -213857693 - AluY SINE Alu -17 294 1 757 165 0 0 chr3 13666895 13667016 -213857562 - FLAM_C SINE Alu -22 121 1 462 65 0 0 chr3 13667209 13667271 -213857307 + (GA)n Simple_repeat Simple_repeat 1 62 0 874 141 0 15 chr3 13667419 13667554 -213857024 - FLAM_A SINE Alu 0 133 1 541 80 91 11 chr3 13667817 13667905 -213856673 + MLT1B LTR MaLR 238 332 -58 1080 125 11 11 chr3 13667905 13668081 -213856497 + AluY SINE Alu 136 311 0 329 134 119 15 chr3 13668088 13668155 -213856423 + MLT1B LTR MaLR 317 390 0 392 256 115 39 chr3 13668179 13668335 -213856243 - L2 LINE L2 -10 3303 3136 203 266 31 62 chr3 13668376 13668440 -213856138 + MIR SINE MIR 85 146 -62 23 0 0 0 chr3 13668496 13668519 -213856059 + AT_rich Low_complexity Low_complexity 1 23 0 1034 170 0 11 chr3 13668534 13668716 -213855862 - AluJb SINE Alu -11 301 122 580 274 17 45 chr3 13669001 13669122 -213855456 - L1MDa LINE L1 -3343 3197 3074 1562 171 0 63 chr3 13669122 13669455 -213855123 + AluJo SINE Alu 1 312 0 580 274 17 45 chr3 13669455 13669621 -213854957 - L1MDa LINE L1 -3466 3074 2918 538 229 12 54 chr3 13669609 13669775 -213854803 + L1ME2 LINE L1 5996 6154 -10 * 265 282 53 0 chr3 13670303 13670434 -213854144 - L1MDa LINE L1 -3959 2581 2444 2426 46 0 33 chr3 13670690 13670996 -213853582 - AluY SINE Alu -15 296 1 796 230 0 0 chr3 13671071 13671223 -213853355 + FRAM SINE Alu 1 152 -14 4635 137 37 18 chr3 13671401 13672220 -213852358 - L1MB4 LINE L1 -10 6170 5337 2026 103 31 0 chr3 13672222 13672512 -213852066 + AluSx SINE Alu 1 299 -13 1734 217 5 8 chr3 13672536 13672927 -213851651 - L1MB4 LINE L1 -940 5206 4817 1105 126 12 0 chr3 13672929 13673096 -213851482 - AluSg/x SINE Alu -13 297 129 661 190 41 8 chr3 13673251 13673372 -213851206 - FLAM_C SINE Alu -17 126 2 3603 194 53 52 chr3 13673564 13674274 -213850304 - L1ME1 LINE L1 -5 6161 5449 9946 41 73 5 chr3 13674274 13675589 -213848989 + SVA Other Other 1 1402 0 3603 194 53 52 chr3 13675589 13675804 -213848774 - L1ME1 LINE L1 -717 5449 5236 672 103 62 0 chr3 13675807 13675925 -213848653 - LTR49 LTR ERV1 -3 592 486 580 208 10 0 chr3 13675931 13676027 -213848551 + LTR49-int LTR ERV1 1 97 -6234 2016 134 0 7 chr3 13676028 13676335 -213848243 - AluSx SINE Alu -7 305 1 1914 154 77 100 chr3 13676337 13676805 -213847773 + LTR49-int LTR ERV1 734 1190 -5141 336 257 0 14 chr3 13676832 13676902 -213847676 + tRNA-Glu-GAG tRNA tRNA 7 75 0 549 115 67 5 chr3 13676956 13677060 -213847518 + LTR49-int LTR ERV1 1290 1934 -2946 2122 98 11 0 chr3 13677155 13677442 -213847136 + AluY SINE Alu 10 299 -12 3852 157 13 51 chr3 13677477 13677762 -213846816 + LTR49-int LTR ERV1 1372 1666 -4665 2153 90 0 7 chr3 13677762 13678051 -213846527 + AluSg1 SINE Alu 5 291 -18 3852 157 13 51 chr3 13678051 13678510 -213846068 + LTR49-int LTR ERV1 1666 2088 -4243 3878 128 10 38 chr3 13678516 13679125 -213845453 - LTR26 LTR ERV1 -11 592 1 438 331 66 36 chr3 13679127 13679432 -213845146 - HUERS-P1 LTR ERV1 -4 6259 5946 335 286 81 49 chr3 13679509 13679694 -213844884 - HERV30 LTR ERV1 -488 4466 4276 1808 176 0 0 chr3 13679856 13680168 -213844410 - AluJo SINE Alu 0 312 1 2222 115 0 0 chr3 13680999 13681311 -213843267 + AluSx SINE Alu 1 312 0 1900 131 37 0 chr3 13681430 13681727 -213842851 + AluSx SINE Alu 1 308 -4 639 283 45 82 chr3 13681957 13682228 -213842350 - HERV30 LTR ERV1 -517 7603 7323 1660 160 3 13 chr3 13682228 13682528 -213842050 + AluJb SINE Alu 1 297 -15 639 283 45 82 chr3 13682528 13682739 -213841839 - HERV30 LTR ERV1 -797 7323 5010 2231 81 10 0 chr3 13682739 13683034 -213841544 - AluSg SINE Alu -12 298 1 447 343 25 47 chr3 13683038 13683402 -213841176 - HERV30 LTR ERV1 -2093 5029 4674 2167 82 0 3 chr3 13683501 13683792 -213840786 + AluSg SINE Alu 1 290 -20 1626 338 42 44 chr3 13684133 13684168 -213840410 - HERV30 LTR ERV1 -2813 4756 4722 1708 188 0 0 chr3 13684168 13684461 -213840117 + AluJo SINE Alu 3 295 -17 1626 338 42 44 chr3 13684461 13685883 -213838695 - HERV30 LTR ERV1 -2847 4722 2832 411 100 0 0 chr3 13685955 13686015 -213838563 + Alu SINE Alu 249 308 -4 793 340 47 50 chr3 13686082 13686723 -213837855 - HERV30 LTR ERV1 -5568 1554 916 401 286 31 8 chr3 13686906 13687074 -213837504 - HERV30 LTR ERV1 -5067 1611 1448 * 1721 258 47 59 chr3 13687051 13687663 -213836915 - HERV30 LTR ERV1 -5188 1075 471 2375 68 0 7 chr3 13687780 13688090 -213836488 + AluY SINE Alu 1 308 -3 310 364 45 13 chr3 13688102 13688256 -213836322 - HERV30 LTR ERV1 -6080 183 25 3415 136 30 76 chr3 13688280 13688912 -213835666 - LTR26 LTR ERV1 0 603 1 371 88 29 88 chr3 13688914 13688936 -213835642 + LTR49-int LTR ERV1 2084 2106 -4225 2015 143 74 36 chr3 13688936 13689124 -213835454 - LTR23 LTR ERV1 0 437 258 2183 90 3 13 chr3 13689124 13689434 -213835144 + AluSx SINE Alu 1 307 -5 2015 143 74 36 chr3 13689434 13689666 -213834912 - LTR23 LTR ERV1 -179 258 1 371 88 29 88 chr3 13689666 13689711 -213834867 + LTR49-int LTR ERV1 2106 2147 -4184 2063 121 3 33 chr3 13689716 13689835 -213834743 - L1PB3 LINE L1 -7 6147 6026 363 23 0 0 chr3 13689835 13689879 -213834699 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2218 68 11 0 chr3 13689879 13690160 -213834418 - AluSp SINE Alu -29 284 1 2063 121 3 33 chr3 13690160 13690369 -213834209 - L1PB3 LINE L1 -126 6028 5828 1874 127 37 3 chr3 13690369 13690668 -213833910 - AluSx SINE Alu -3 309 1 3991 166 13 22 chr3 13690671 13690780 -213833798 - L1PB3 LINE L1 -464 5690 5582 2073 112 3 7 chr3 13690780 13691084 -213833494 + AluSx SINE Alu 4 306 -6 3991 166 13 22 chr3 13691084 13691531 -213833047 - L1PB3 LINE L1 -572 5582 5132 1932 119 0 14 chr3 13691531 13691841 -213832737 - AluSx SINE Alu 0 306 1 3991 166 13 22 chr3 13691841 13692504 -213832074 - L1PB3 LINE L1 -1022 5132 4484 2163 69 13 7 chr3 13692504 13692810 -213831768 - AluY SINE Alu -3 308 1 674 173 0 0 chr3 13692815 13692925 -213831653 - FLAM_C SINE Alu -15 128 19 740 147 0 0 chr3 13692926 13693035 -213831543 + MER50 LTR ERV1 70 178 -556 1894 136 17 0 chr3 13693040 13693334 -213831244 + AluSp SINE Alu 1 299 -14 345 132 38 0 chr3 13693342 13693395 -213831183 + LTR49 LTR ERV1 535 589 -6 1313 197 19 104 chr3 13693397 13693450 -213831128 - L1M4 LINE L1 -904 5242 5186 2322 66 7 3 chr3 13693450 13693751 -213830827 - AluY SINE Alu -9 302 1 1313 197 19 104 chr3 13693751 13693848 -213830730 - L1M4 LINE L1 -960 5186 5082 1858 150 10 16 chr3 13693848 13694162 -213830416 - AluJo SINE Alu 0 312 1 1313 197 19 104 chr3 13694162 13694442 -213830136 - L1M4 LINE L1 -1064 5082 4848 776 216 13 0 chr3 13694429 13694582 -213829996 + L1MB8 LINE L1 5425 5579 -587 * 1754 176 6 6 chr3 13694582 13694894 -213829684 + AluJb SINE Alu 1 312 0 389 114 48 59 chr3 13694913 13694976 -213829602 + L1MB8 LINE L1 5552 5616 -549 2570 132 50 68 chr3 13694976 13695475 -213829103 + LTR2B LTR ERV1 1 490 0 389 114 48 59 chr3 13695475 13695507 -213829071 + L1MB8 LINE L1 5616 5647 -518 496 236 49 0 chr3 13695708 13695831 -213828747 + L1MB8 LINE L1 5635 5763 -401 1667 112 4 45 chr3 13695831 13696098 -213828480 + LTR8 LTR ERV1 1 256 -435 7304 44 7 99 chr3 13696098 13697245 -213827333 + SVA Other Other 7 1047 -339 473 196 50 33 chr3 13697291 13697441 -213827137 + L1MC5 LINE L1 7786 7995 0 2731 91 16 139 chr3 13697462 13697783 -213826795 + LTR8 LTR ERV1 240 475 -216 1705 178 20 0 chr3 13697783 13698086 -213826492 + AluJb SINE Alu 1 309 -3 2731 91 16 139 chr3 13698086 13698280 -213826298 + LTR8 LTR ERV1 475 691 0 614 204 69 61 chr3 13698282 13698567 -213826011 - LTR48B LTR ERV1 -10 729 382 273 167 45 15 chr3 13698630 13698696 -213825882 - LTR48B LTR ERV1 -449 195 128 268 274 104 19 chr3 13698668 13698774 -213825804 - MER39 LTR ERV1 -582 125 11 * 1102 170 131 0 chr3 13698807 13699013 -213825565 - MER34C LTR ERV1 -352 233 1 2278 157 9 14 chr3 13699015 13699443 -213825135 + L1MB8 LINE L1 5752 6177 -1 2209 88 3 3 chr3 13699453 13699749 -213824829 + AluSx SINE Alu 1 296 -16 617 215 28 0 chr3 13699749 13699893 -213824685 - L1M4 LINE L1 -1291 4855 4708 242 28 0 28 chr3 13699893 13699929 -213824649 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 990 157 20 108 chr3 13699930 13700044 -213824534 - AluJo SINE Alu -80 232 150 1683 101 0 4 chr3 13700044 13700272 -213824306 - AluSc SINE Alu -82 227 1 990 157 20 108 chr3 13700272 13700406 -213824172 - AluJo SINE Alu -162 150 6 1083 202 72 19 chr3 13700411 13700718 -213823860 - L1M4 LINE L1 -1440 4706 4384 1623 158 3 30 chr3 13700724 13700778 -213823800 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 13700778 13701119 -213823459 + MER61A LTR ERV1 1 343 0 1623 158 3 30 chr3 13701119 13701362 -213823216 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 13701415 13701711 -213822867 - AluY SINE Alu -2 309 1 2059 111 0 55 chr3 13701726 13702051 -213822527 - AluSg SINE Alu -1 309 3 2250 91 7 3 chr3 13702088 13702396 -213822182 - AluY SINE Alu -2 309 1 1400 220 58 47 chr3 13702407 13702796 -213821782 - L1M4 LINE L1 -1807 4339 3943 2213 89 0 13 chr3 13702796 13703100 -213821478 - AluSc SINE Alu -9 300 1 1400 220 58 47 chr3 13703100 13703160 -213821418 - L1M4 LINE L1 -2203 3943 3885 1446 204 72 135 chr3 13703160 13703885 -213820693 - LTR8A LTR ERV1 0 727 49 976 153 10 61 chr3 13703887 13704083 -213820495 - LTR8 LTR ERV1 -503 188 3 5048 70 14 43 chr3 13704083 13704663 -213819915 - LTR8 LTR ERV1 0 691 134 2169 29 39 59 chr3 13704663 13704970 -213819608 + AluY SINE Alu 1 301 -10 5048 70 14 43 chr3 13704970 13705101 -213819477 - LTR8 LTR ERV1 -557 134 1 519 138 0 12 chr3 13705163 13705243 -213819335 - AluJ/FLAM SINE Alu -225 87 9 552 238 67 54 chr3 13705254 13705477 -213819101 - L1M4 LINE L1 -2368 3778 3553 22 35 0 0 chr3 13705493 13705522 -213819056 + GC_rich Low_complexity Low_complexity 1 29 0 2008 103 3 0 chr3 13705927 13706217 -213818361 + AluSx SINE Alu 1 291 -21 1812 157 0 0 chr3 13706232 13706531 -213818047 + AluJo SINE Alu 1 299 -13 1909 115 41 0 chr3 13706795 13707090 -213817488 + AluSq SINE Alu 1 307 -6 180 0 0 0 chr3 13707090 13707110 -213817468 + (TA)n Simple_repeat Simple_repeat 2 21 0 2141 65 25 0 chr3 13708198 13708498 -213816080 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 13708975 13709019 -213815559 - L1M4 LINE L1 -2585 3561 3518 2319 78 0 10 chr3 13709019 13709328 -213815250 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 13709328 13709368 -213815210 - L1M4 LINE L1 -2628 3518 3479 1626 158 39 7 chr3 13709368 13709653 -213814925 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 13709653 13709852 -213814726 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 13709857 13709922 -213814656 - L1MB5 LINE L1 -6 6168 6100 1799 180 59 71 chr3 13709922 13710361 -213814217 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 13710359 13710432 -213814146 - LTR8 LTR ERV1 -613 78 1 * 795 191 48 33 chr3 13710435 13710645 -213813933 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 13710645 13710795 -213813783 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 13710816 13710940 -213813638 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 13710949 13710972 -213813606 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 13711072 13711252 -213813326 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 13711257 13711279 -213813299 + AT_rich Low_complexity Low_complexity 1 22 0 1892 133 7 20 chr3 13711286 13711422 -213813156 + AluSx SINE Alu 1 137 -175 2236 102 3 0 chr3 13711422 13711725 -213812853 + AluSp SINE Alu 2 305 -8 1892 133 7 20 chr3 13711725 13711879 -213812699 + AluSx SINE Alu 137 289 -23 249 57 0 0 chr3 13711879 13711914 -213812664 + (CATA)n Simple_repeat Simple_repeat 2 36 0 786 161 0 0 chr3 13711923 13712041 -213812537 - FLAM_C SINE Alu -15 118 1 1930 141 0 3 chr3 13712106 13712397 -213812181 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 13712414 13712585 -213811993 - FAM SINE Alu -1 174 5 783 173 0 67 chr3 13712640 13712790 -213811788 + Tigger2a DNA MER2_type 1 140 -294 2116 104 20 0 chr3 13712790 13713088 -213811490 + AluY SINE Alu 1 304 -7 2079 108 6 25 chr3 13713088 13713404 -213811174 + AluSg SINE Alu 1 310 0 1979 112 37 27 chr3 13713404 13713700 -213810878 - THE1B LTR MaLR -65 299 1 918 41 0 0 chr3 13713700 13713821 -213810757 + Tigger2a DNA MER2_type 162 282 -162 1680 168 0 23 chr3 13713823 13714127 -213810451 + AluJo SINE Alu 3 299 -13 292 243 14 14 chr3 13714127 13714197 -213810381 + Tigger2a DNA MER2_type 375 444 0 2169 110 0 3 chr3 13714284 13714585 -213809993 - AluSq SINE Alu -13 300 1 446 297 198 4 chr3 13714967 13715199 -213809379 - MLT1L LTR MaLR -123 492 216 1690 141 31 10 chr3 13715446 13715736 -213808842 - AluJo SINE Alu -12 300 5 2416 53 0 13 chr3 13715775 13716078 -213808500 - AluY SINE Alu -12 299 1 1906 144 0 0 chr3 13716251 13716542 -213808036 - AluSx SINE Alu -21 291 1 617 212 74 20 chr3 13716575 13716629 -213807949 - MIR3 SINE MIR -55 153 103 2230 132 72 46 chr3 13716629 13717046 -213807532 + MSTA LTR MaLR 1 428 0 617 212 74 20 chr3 13717046 13717192 -213807386 - MIR3 SINE MIR -105 103 3 1627 240 45 35 chr3 13718009 13718235 -213806343 + Zaphod DNA AcHobo 1 234 -3797 1751 180 3 0 chr3 13718235 13718546 -213806032 + AluJb SINE Alu 1 312 0 1627 240 45 35 chr3 13718546 13718744 -213805834 + Zaphod DNA AcHobo 234 429 -3602 1362 116 55 116 chr3 13718746 13718965 -213805613 - L1PA15 LINE L1 -4 6161 5963 1888 103 82 10 chr3 13718965 13719256 -213805322 - AluSx SINE Alu 0 312 1 1362 116 55 116 chr3 13719256 13719328 -213805250 - L1PA15 LINE L1 -202 5963 5888 1645 176 27 117 chr3 13719330 13719635 -213804943 + Zaphod DNA AcHobo 422 753 -3278 976 207 0 11 chr3 13719635 13719809 -213804769 + FAM SINE Alu 1 172 -3 1806 174 0 0 chr3 13719813 13720112 -213804466 + AluJo SINE Alu 1 299 -13 1645 176 27 117 chr3 13720112 13720397 -213804181 + Zaphod DNA AcHobo 756 963 -3068 777 202 82 16 chr3 13720411 13720654 -213803924 + Zaphod DNA AcHobo 3595 3853 -178 1948 147 0 3 chr3 13720655 13720962 -213803616 + AluSx SINE Alu 1 306 -6 433 252 55 0 chr3 13721039 13721166 -213803412 + L2 LINE L2 2919 3052 -261 413 58 0 0 chr3 13721294 13721346 -213803232 + L1MA7 LINE L1 5857 5908 -383 366 312 132 10 chr3 13721353 13721558 -213803020 + L2 LINE L2 3084 3313 0 528 227 63 48 chr3 13721622 13721829 -213802749 + L1MC5 LINE L1 7705 7914 -47 250 354 39 22 chr3 13721988 13722166 -213802412 - L2 LINE L2 -188 3084 2904 698 269 77 21 chr3 13722185 13722613 -213801965 - MLT1L LTR MaLR -42 573 89 297 307 13 33 chr3 13722701 13722851 -213801727 - L2 LINE L2 -575 2739 2593 743 288 5 5 chr3 13722856 13723061 -213801517 + LTR33 LTR ERVL 9 213 -308 3159 203 63 16 chr3 13723164 13723848 -213800730 + LTR28 LTR ERV1 1 716 -304 818 214 3 124 chr3 13723823 13724122 -213800456 + MER52A LTR ERV1 1208 1470 -285 * 343 219 81 31 chr3 13724134 13724265 -213800313 + MER52A LTR ERV1 587 635 -1 295 264 52 97 chr3 13724276 13724373 -213800205 + LTR33 LTR ERVL 374 464 -57 2166 89 0 0 chr3 13724373 13724698 -213799880 - AluSc SINE Alu 0 325 1 295 264 52 97 chr3 13724698 13724754 -213799824 + LTR33 LTR ERVL 464 521 0 1868 147 0 7 chr3 13724999 13725299 -213799279 + AluSx SINE Alu 1 298 -14 871 133 37 0 chr3 13725486 13725621 -213798957 - LTR23 LTR ERV1 0 437 298 1816 146 4 4 chr3 13725624 13725944 -213798634 - AluJb SINE Alu 0 320 1 1180 166 4 57 chr3 13725944 13726191 -213798387 - LTR23 LTR ERV1 -203 234 1 1353 195 37 104 chr3 13726191 13726683 -213797895 + MLT1C LTR MaLR 9 467 0 1246 181 116 32 chr3 13726837 13727114 -213797464 + AluJo SINE Alu 1 300 -12 1100 238 52 82 chr3 13727169 13727562 -213797016 - L1MC5 LINE L1 -99 7862 7492 1965 149 7 0 chr3 13727562 13727863 -213796715 - AluSx SINE Alu -9 303 1 1100 238 52 82 chr3 13727863 13728082 -213796496 - L1MC5 LINE L1 -469 7492 7268 457 202 12 0 chr3 13728265 13728349 -213796229 - AluS SINE Alu -222 90 6 538 199 160 6 chr3 13728354 13728510 -213796068 - L1MEc LINE L1 -3746 2469 2290 1870 172 60 109 chr3 13728545 13728912 -213795666 - L1ME2 LINE L1 -185 5979 5650 2237 110 7 0 chr3 13728912 13729222 -213795356 - AluSx SINE Alu 0 312 1 1870 172 60 109 chr3 13729222 13729442 -213795136 - L1ME2 LINE L1 -514 5650 5421 1329 152 119 30 chr3 13729470 13729545 -213795033 - AluJo SINE Alu -19 293 226 2092 189 41 41 chr3 13729545 13730031 -213794547 - MER66B LTR ERV1 0 486 1 1329 152 119 30 chr3 13730031 13730224 -213794354 - AluJo SINE Alu -86 226 1 342 0 0 0 chr3 13730226 13730264 -213794314 + (TA)n Simple_repeat Simple_repeat 1 38 0 1979 127 3 0 chr3 13730265 13730556 -213794022 - AluSx SINE Alu -20 292 1 364 304 44 13 chr3 13730582 13730740 -213793838 - L1MEc LINE L1 -4595 1801 1639 352 42 0 0 chr3 13730748 13730796 -213793782 - AluY SINE Alu 0 300 253 1504 168 0 25 chr3 13730796 13731076 -213793502 + AluJb SINE Alu 23 295 -17 697 229 44 84 chr3 13731078 13731267 -213793311 - L1ME3 LINE L1 -7 6155 5979 1927 133 0 25 chr3 13731267 13731582 -213792996 - AluSx SINE Alu -5 307 1 697 229 44 84 chr3 13731582 13731641 -213792937 - L1ME3 LINE L1 -183 5979 5919 593 122 28 37 chr3 13731687 13731794 -213792784 - L1MB8 LINE L1 -38 6140 6035 380 242 0 22 chr3 13731797 13731888 -213792690 - MLT1F LTR MaLR -407 135 47 2094 126 0 0 chr3 13732102 13732404 -213792174 - AluSx SINE Alu -10 302 1 2128 100 6 16 chr3 13732412 13732723 -213791855 - AluSp SINE Alu -4 309 2 480 200 139 133 chr3 13732764 13732830 -213791748 + MER5A DNA MER1_type 9 73 -116 1744 141 3 17 chr3 13732830 13733121 -213791457 + AluJo SINE Alu 1 287 -25 480 200 139 133 chr3 13733121 13733234 -213791344 + MER5A DNA MER1_type 73 189 0 426 207 24 0 chr3 13733264 13733346 -213791232 + FLAM SINE Alu 40 123 -20 202 239 0 0 chr3 13733409 13733455 -213791123 + A-rich Low_complexity Low_complexity 1 46 0 350 235 53 38 chr3 13733468 13733600 -213790978 + L1M4 LINE L1 4999 5132 -1014 327 262 50 21 chr3 13733638 13733779 -213790799 + L1M4 LINE L1 5103 5247 -899 4669 104 6 56 chr3 13733784 13734512 -213790066 - LTR8 LTR ERV1 0 691 1 27818 104 103 120 chr3 13734512 13735149 -213789429 - HUERS-P1 LTR ERV1 0 6263 5617 2316 75 0 0 chr3 13735149 13735443 -213789135 - AluY SINE Alu -17 294 1 27818 104 103 120 chr3 13735443 13735470 -213789108 - HUERS-P1 LTR ERV1 -646 5617 5591 1738 125 31 48 chr3 13735470 13735791 -213788787 + AluSx SINE Alu 1 316 0 27818 104 103 120 chr3 13735791 13736094 -213788484 - HUERS-P1 LTR ERV1 -672 5591 5284 2235 78 3 3 chr3 13736094 13736388 -213788190 - AluSp SINE Alu -18 295 2 27818 104 103 120 chr3 13736388 13736666 -213787912 - HUERS-P1 LTR ERV1 -979 5284 5003 1812 122 0 42 chr3 13736666 13736987 -213787591 - AluSx SINE Alu 0 315 7 27818 104 103 120 chr3 13736987 13737015 -213787563 - HUERS-P1 LTR ERV1 -1260 5003 4976 2009 104 13 13 chr3 13737015 13737324 -213787254 - AluSc SINE Alu 0 309 1 1031 54 0 8 chr3 13737330 13737460 -213787118 - AluY SINE Alu -85 226 98 27818 104 103 120 chr3 13737460 13737576 -213787002 - HUERS-P1 LTR ERV1 -1292 4971 4855 2111 80 0 0 chr3 13737576 13737851 -213786727 - AluSq SINE Alu -14 299 25 27818 104 103 120 chr3 13737851 13738266 -213786312 - HUERS-P1 LTR ERV1 -1408 4855 4435 2377 77 0 0 chr3 13738266 13738576 -213786002 + AluY SINE Alu 2 311 0 27818 104 103 120 chr3 13738576 13738617 -213785961 - HUERS-P1 LTR ERV1 -1828 4435 4395 690 180 262 0 chr3 13738617 13738789 -213785789 + AluJb SINE Alu 82 298 -14 27818 104 103 120 chr3 13738789 13738911 -213785667 - HUERS-P1 LTR ERV1 -1868 4395 4272 2090 121 0 0 chr3 13738911 13739208 -213785370 - AluSx SINE Alu -15 297 1 27818 104 103 120 chr3 13739208 13739300 -213785278 - HUERS-P1 LTR ERV1 -1991 4272 4180 2364 68 7 0 chr3 13739300 13739608 -213784970 - AluY SINE Alu 0 311 2 27818 104 103 120 chr3 13739608 13740288 -213784290 - HUERS-P1 LTR ERV1 -2083 4180 3490 2059 125 0 10 chr3 13740288 13740466 -213784112 - AluSx SINE Alu -1 311 136 2244 80 3 0 chr3 13740466 13740795 -213783783 - AluY SINE Alu 0 311 1 2059 125 0 10 chr3 13740795 13740929 -213783649 - AluSx SINE Alu -176 136 2 27818 104 103 120 chr3 13740929 13741129 -213783449 - HUERS-P1 LTR ERV1 -2773 3490 3288 2219 107 0 0 chr3 13741129 13741437 -213783141 + AluSx SINE Alu 1 308 -4 27818 104 103 120 chr3 13741437 13742915 -213781663 - HUERS-P1 LTR ERV1 -2975 3288 1787 1659 111 111 0 chr3 13742915 13743185 -213781393 - AluSx SINE Alu -12 300 1 27818 104 103 120 chr3 13743185 13743335 -213781243 - HUERS-P1 LTR ERV1 -4476 1787 1636 2235 96 0 0 chr3 13743335 13743637 -213780941 - AluSx SINE Alu -10 302 1 27818 104 103 120 chr3 13743637 13743940 -213780638 - HUERS-P1 LTR ERV1 -4627 1636 1329 441 0 0 0 chr3 13743940 13743989 -213780589 + (GA)n Simple_repeat Simple_repeat 2 50 0 27818 104 103 120 chr3 13743989 13744988 -213779590 - HUERS-P1 LTR ERV1 -4934 1329 177 2239 69 0 23 chr3 13744988 13745292 -213779286 + AluY SINE Alu 1 297 -14 27818 104 103 120 chr3 13745292 13745467 -213779111 - HUERS-P1 LTR ERV1 -6086 177 1 4113 101 17 124 chr3 13745467 13745533 -213779045 - LTR8 LTR ERV1 0 691 620 2126 83 4 0 chr3 13745533 13745810 -213778768 + AluSp SINE Alu 3 280 -33 2452 49 0 10 chr3 13745811 13746116 -213778462 + AluY SINE Alu 1 302 -9 4113 101 17 124 chr3 13746116 13746734 -213777844 - LTR8 LTR ERV1 -71 620 95 7174 58 3 0 chr3 13746734 13747804 -213776774 + L1PA6 LINE L1 5079 6151 -3 4113 101 17 124 chr3 13747804 13747890 -213776688 - LTR8 LTR ERV1 -596 95 1 643 246 27 0 chr3 13747896 13748083 -213776495 + L1ME LINE L1 5254 5445 -725 * 906 213 127 8 chr3 13748074 13748342 -213776236 + L1ME1 LINE L1 5863 6162 -4 1550 184 4 0 chr3 13748397 13748709 -213775869 + AluJb SINE Alu 9 321 0 297 241 125 0 chr3 13748764 13748876 -213775702 + L1ME LINE L1 5428 5553 -609 240 93 209 0 chr3 13748915 13748958 -213775620 - LTR54 LTR ERV1 0 510 459 1973 118 0 10 chr3 13748959 13749135 -213775443 - AluSx SINE Alu -3 309 136 2134 106 0 0 chr3 13749135 13749427 -213775151 - AluSq SINE Alu -21 292 1 1973 118 0 10 chr3 13749427 13749555 -213775023 - AluSx SINE Alu -176 136 8 1525 151 43 98 chr3 13749555 13749610 -213774968 - LTR54 LTR ERV1 -134 376 320 2240 77 0 26 chr3 13749610 13749921 -213774657 - AluY SINE Alu -8 303 1 1525 151 43 98 chr3 13749921 13749996 -213774582 - LTR54 LTR ERV1 -190 320 242 1987 126 0 40 chr3 13749996 13750321 -213774257 + AluSx SINE Alu 1 312 0 1525 151 43 98 chr3 13750321 13750568 -213774010 - LTR54 LTR ERV1 -268 242 18 1567 156 39 39 chr3 13750568 13750876 -213773702 - AluJb SINE Alu -4 308 1 1525 151 43 98 chr3 13750876 13750894 -213773684 - LTR54 LTR ERV1 -492 18 1 1795 154 0 7 chr3 13750969 13751274 -213773304 + AluJo SINE Alu 1 303 -9 687 211 54 70 chr3 13751486 13751799 -213772779 + L1MC5 LINE L1 7624 7931 -30 289 239 11 57 chr3 13751827 13751915 -213772663 + MIR SINE MIR 98 181 -81 2128 86 17 0 chr3 13751950 13752242 -213772336 - AluSg SINE Alu -13 297 1 2046 115 3 0 chr3 13752330 13752626 -213771952 - AluSx SINE Alu -15 297 1 333 271 12 12 chr3 13754134 13754219 -213770359 + MER5A DNA MER1_type 49 133 -56 2095 99 3 7 chr3 13754220 13754523 -213770055 - AluSx SINE Alu -10 302 1 1788 173 0 3 chr3 13754524 13754837 -213769741 - AluJo SINE Alu 0 312 1 442 106 91 0 chr3 13755032 13755098 -213769480 - HY1 scRNA scRNA -39 73 2 1909 118 3 20 chr3 13755109 13755267 -213769311 - AluSx SINE Alu -21 291 139 2181 94 0 3 chr3 13755267 13755564 -213769014 - AluSc SINE Alu -13 296 1 1909 118 3 20 chr3 13755564 13755701 -213768877 - AluSx SINE Alu -173 139 1 915 140 263 31 chr3 13755917 13756145 -213768433 + AluSg1 SINE Alu 13 293 -16 1256 117 277 9 chr3 13756158 13756389 -213768189 + AluSx SINE Alu 1 293 -9 2067 97 10 3 chr3 13756389 13756687 -213767891 + AluSx SINE Alu 1 300 -12 223 313 53 69 chr3 13757359 13757490 -213767088 + MIR3 SINE MIR 1 129 -79 480 239 22 45 chr3 13757567 13757701 -213766877 + MIR SINE MIR 8 138 -124 280 241 269 0 chr3 13758195 13758303 -213766275 + MER5A DNA MER1_type 53 189 0 1954 97 49 7 chr3 13758530 13758818 -213765760 + AluSx SINE Alu 1 300 -12 1735 154 14 0 chr3 13759031 13759324 -213765254 - AluSx SINE Alu -15 297 1 200 35 35 0 chr3 13759375 13759404 -213765174 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1358 195 87 14 chr3 13759534 13759811 -213764767 - AluJo SINE Alu -1 301 5 304 236 14 28 chr3 13759878 13759950 -213764628 - MER5A DNA MER1_type -87 102 32 399 240 98 44 chr3 13760054 13760154 -213764424 - MIR SINE MIR -6 256 163 2097 90 0 23 chr3 13760154 13760455 -213764123 - AluSg SINE Alu -16 294 1 399 240 98 44 chr3 13760455 13760592 -213763986 - MIR SINE MIR -99 163 9 358 302 62 27 chr3 13761174 13761320 -213763258 + MIR SINE MIR 11 162 -46 1343 154 15 133 chr3 13761514 13761852 -213762726 + AluJb SINE Alu 1 298 -4 2282 96 7 0 chr3 13762048 13762349 -213762229 - AluSx SINE Alu -9 303 1 2292 105 3 7 chr3 13762864 13763168 -213761410 - AluSx SINE Alu -9 303 1 1802 145 84 10 chr3 13763820 13764131 -213760447 - MER1B DNA MER1_type 0 339 6 2091 109 0 4 chr3 13764427 13764703 -213759875 + AluSq SINE Alu 16 290 -23 319 243 215 35 chr3 13765200 13765344 -213759234 + MIR SINE MIR 32 201 -61 389 273 45 9 chr3 13765370 13765480 -213759098 - L2 LINE L2 -8 3305 3192 214 254 0 0 chr3 13765553 13765608 -213758970 - MIR SINE MIR -118 144 90 522 228 103 0 chr3 13765920 13766065 -213758513 - Charlie2 DNA MER1_type -2587 195 36 2549 58 0 13 chr3 13766109 13766420 -213758158 - AluY SINE Alu -4 307 1 2170 87 7 0 chr3 13766421 13766696 -213757882 - AluSx SINE Alu -35 277 1 365 208 47 28 chr3 13766826 13766932 -213757646 - MER103 DNA DNA -9 157 50 3445 85 42 24 chr3 13767099 13767609 -213756969 + L1MA3 LINE L1 5737 6259 -46 2392 87 7 0 chr3 13767609 13767907 -213756671 + AluSg SINE Alu 1 300 -10 3445 85 42 24 chr3 13767907 13767950 -213756628 + L1MA3 LINE L1 6259 6300 -5 1269 173 32 22 chr3 13767971 13768249 -213756329 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 13768286 13768327 -213756251 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 13768327 13768634 -213755944 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 13768634 13768698 -213755880 + Charlie5 DNA MER1_type 97 163 -2461 2047 143 10 0 chr3 13768733 13769040 -213755538 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 13769047 13769198 -213755380 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 13770840 13771071 -213753507 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 13771465 13771766 -213752812 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 13772343 13772401 -213752177 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 13772375 13772452 -213752126 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 13773845 13774009 -213750569 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 13774124 13774257 -213750321 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 13774854 13775070 -213749508 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 13775608 13775652 -213748926 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 13776306 13776409 -213748169 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 13776524 13776585 -213747993 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 13776867 13777097 -213747481 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 13777113 13777244 -213747334 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 13777437 13777749 -213746829 + AluSp SINE Alu 1 313 0 297 274 263 11 chr3 13779113 13779292 -213745286 - MIR SINE MIR -18 244 21 281 323 57 16 chr3 13779400 13779524 -213745054 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 13781172 13781340 -213743238 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 13783027 13783140 -213741438 + L2 LINE L2 2716 2826 -488 2294 52 29 0 chr3 13783171 13783471 -213741107 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 13783480 13783591 -213740987 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 13783775 13783806 -213740772 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 13784117 13784211 -213740367 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 13784280 13784306 -213740272 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 13784388 13784462 -213740116 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 13785540 13785565 -213739013 + GC_rich Low_complexity Low_complexity 1 25 0 603 272 136 0 chr3 13786472 13786663 -213737915 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 13786663 13786852 -213737726 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 13789185 13789297 -213735281 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 13789881 13790180 -213734398 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 13792162 13792271 -213732307 + FLAM_C SINE Alu 9 117 -26 354 298 61 15 chr3 13795525 13795656 -213728922 + MIR3 SINE MIR 44 180 -28 358 250 0 44 chr3 13795887 13796023 -213728555 - AluSq/x SINE Alu -153 150 21 531 257 15 7 chr3 13796077 13796213 -213728365 - MER2 DNA MER2_type -208 137 1 625 280 48 48 chr3 13796317 13796567 -213728011 + MIR SINE MIR 8 257 -5 2367 88 0 0 chr3 13796618 13796903 -213727675 + AluSg1 SINE Alu 1 285 -24 231 36 0 0 chr3 13796903 13796931 -213727647 + (TA)n Simple_repeat Simple_repeat 2 29 0 425 318 79 28 chr3 13796950 13797202 -213727376 + L1MEc LINE L1 2133 2397 -3999 743 54 8 70 chr3 13797277 13797406 -213727172 - L1PA13 LINE L1 -1 6162 6042 1085 235 30 0 chr3 13797732 13797966 -213726612 + MIR SINE MIR 22 262 0 327 353 41 8 chr3 13797999 13798121 -213726457 - L2 LINE L2 -28 3244 3119 198 349 94 7 chr3 13798486 13798635 -213725943 - L2 LINE L2 -240 3032 2871 234 236 14 42 chr3 13798741 13798813 -213725765 + MIR SINE MIR 77 146 -116 2078 103 7 27 chr3 13798839 13799131 -213725447 - AluSx SINE Alu -26 286 1 245 301 0 0 chr3 13799134 13799207 -213725371 + MIR SINE MIR 137 209 -53 1762 178 3 16 chr3 13799418 13799721 -213724857 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 13799755 13799879 -213724699 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 13799936 13800012 -213724566 + L2 LINE L2 3238 3313 0 2292 87 3 7 chr3 13800107 13800396 -213724182 + AluSg SINE Alu 12 299 -11 1712 163 54 0 chr3 13800455 13800749 -213723829 - AluJo SINE Alu -2 310 1 951 160 96 0 chr3 13800817 13801004 -213723574 + MER3 DNA MER1_type 1 205 -4 253 309 228 0 chr3 13801040 13801163 -213723415 + MIR3 SINE MIR 31 181 -27 192 325 172 23 chr3 13801337 13801622 -213722956 + L2 LINE L2 2738 3072 -200 486 0 0 0 chr3 13801625 13801679 -213722899 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 2017 117 7 7 chr3 13801679 13801962 -213722616 - AluSq SINE Alu -30 283 1 2281 98 0 52 chr3 13801985 13802311 -213722267 + AluSx SINE Alu 1 309 -3 678 147 28 0 chr3 13802351 13802460 -213722118 + FLAM_A SINE Alu 23 134 -8 2349 267 53 14 chr3 13802462 13803042 -213721536 - L2 LINE L2 -1633 1681 1066 1733 166 16 26 chr3 13803042 13803349 -213721229 + AluJo SINE Alu 5 308 -4 2349 267 53 14 chr3 13803349 13803484 -213721094 - L2 LINE L2 -2248 1066 938 2238 93 0 42 chr3 13803497 13803810 -213720768 - AluSx SINE Alu -12 300 1 257 164 179 30 chr3 13803917 13803984 -213720594 - MIR SINE MIR -115 93 17 396 292 41 10 chr3 13804453 13804601 -213719977 - MIR SINE MIR -63 145 45 309 320 27 0 chr3 13805565 13805899 -213718679 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 200 135 0 58 chr3 13805938 13805990 -213718588 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2453 53 0 7 chr3 13806083 13806391 -213718187 + AluY SINE Alu 1 306 0 358 320 17 22 chr3 13806395 13806573 -213718005 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 * 372 336 0 0 chr3 13806549 13806686 -213717892 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 799 267 30 13 chr3 13806695 13806927 -213717651 + MIR SINE MIR 9 244 -18 243 0 0 0 chr3 13806933 13806960 -213717618 + (A)n Simple_repeat Simple_repeat 1 27 0 338 240 113 53 chr3 13808706 13808766 -213715812 + MIR SINE MIR 87 142 -120 2428 71 7 3 chr3 13808766 13809061 -213715517 - AluSp SINE Alu -17 296 1 338 240 113 53 chr3 13809061 13809150 -213715428 + MIR SINE MIR 142 245 -17 415 236 286 0 chr3 13809152 13809292 -213715286 + MER5A DNA MER1_type 4 183 -6 271 339 11 23 chr3 13809551 13809728 -213714850 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 365 264 0 9 chr3 13809958 13810182 -213714396 + (TGGA)n Simple_repeat Simple_repeat 1 221 0 781 164 0 0 chr3 13811010 13811126 -213713452 + AluJo/FLAM SINE Alu 1 116 -186 2276 119 3 0 chr3 13811126 13811428 -213713150 - AluSx SINE Alu -9 303 1 38 0 0 0 chr3 13811429 13811467 -213713111 + AT_rich Low_complexity Low_complexity 1 38 0 * 852 170 50 0 chr3 13811439 13811598 -213712980 - MER2 DNA MER2_type -178 167 1 649 277 47 47 chr3 13811699 13811952 -213712626 + MIR SINE MIR 5 257 -5 2367 88 0 0 chr3 13812003 13812288 -213712290 + AluSg1 SINE Alu 1 285 -24 231 36 0 0 chr3 13812288 13812316 -213712262 + (TA)n Simple_repeat Simple_repeat 2 29 0 425 318 79 28 chr3 13812335 13812587 -213711991 + L1MEc LINE L1 2133 2397 -3999 743 54 8 70 chr3 13812662 13812791 -213711787 - L1PA13 LINE L1 -1 6162 6042 1085 235 30 0 chr3 13813117 13813351 -213711227 + MIR SINE MIR 22 262 0 327 353 41 8 chr3 13813384 13813506 -213711072 - L2 LINE L2 -28 3244 3119 198 349 94 7 chr3 13813871 13814020 -213710558 - L2 LINE L2 -240 3032 2871 382 197 7 132 chr3 13814126 13814201 -213710377 + MIR SINE MIR 77 125 -137 2262 102 6 25 chr3 13814201 13814516 -213710062 - AluSx SINE Alu -3 309 1 382 197 7 132 chr3 13814516 13814592 -213709986 + MIR SINE MIR 125 209 -53 1793 175 3 16 chr3 13814803 13815106 -213709472 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 13815140 13815264 -213709314 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 13815321 13815397 -213709181 + L2 LINE L2 3238 3313 0 2440 93 0 0 chr3 13815481 13815782 -213708796 + AluSx SINE Alu 1 301 -11 1712 163 54 0 chr3 13815841 13816135 -213708443 - AluJo SINE Alu -2 310 1 951 160 96 0 chr3 13816203 13816390 -213708188 + MER3 DNA MER1_type 1 205 -4 253 309 228 0 chr3 13816426 13816549 -213708029 + MIR3 SINE MIR 31 181 -27 294 309 196 33 chr3 13816723 13817011 -213707567 + L2 LINE L2 2738 2978 -335 450 0 0 0 chr3 13817011 13817061 -213707517 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2246 102 0 0 chr3 13817061 13817344 -213707234 - AluSq SINE Alu -30 283 1 294 309 196 33 chr3 13817344 13817536 -213707042 + L2 LINE L2 2977 3304 -9 2299 125 0 0 chr3 13817540 13817844 -213706734 + AluSx SINE Alu 1 304 -8 398 300 0 0 chr3 13817867 13817957 -213706621 + L1MC4 LINE L1 6614 6703 -1339 392 286 0 11 chr3 13817917 13818008 -213706570 - L1MC4 LINE L1 -1339 6703 6614 * 387 267 0 11 chr3 13817964 13818054 -213706524 + L1MC4 LINE L1 6615 6703 -1339 * 2195 189 35 36 chr3 13818354 13818874 -213705704 - LTR40a LTR ERVL 0 519 1 305 221 39 39 chr3 13819093 13819197 -213705381 + MIR SINE MIR 81 184 -78 939 311 128 28 chr3 13819656 13820473 -213704105 - L2 LINE L2 -99 3214 2480 690 187 0 22 chr3 13820473 13820607 -213703971 + AluJo/FLAM SINE Alu 3 133 -169 2556 83 3 0 chr3 13820607 13820919 -213703659 + AluSp SINE Alu 1 313 0 939 311 128 28 chr3 13820919 13820930 -213703648 - L2 LINE L2 -832 2481 2236 203 364 0 43 chr3 13821014 13821201 -213703377 + C-rich Low_complexity Low_complexity 1 179 0 * 209 343 6 40 chr3 13821066 13821241 -213703337 + CT-rich Low_complexity Low_complexity 2 170 0 496 278 163 47 chr3 13821252 13821701 -213702877 - L2 LINE L2 -1104 2210 1710 672 244 6 18 chr3 13822521 13822689 -213701889 - MIR SINE MIR 0 262 97 212 273 167 0 chr3 13822982 13823048 -213701530 - MIR SINE MIR -117 145 69 211 301 0 58 chr3 13823490 13823646 -213700932 + C-rich Low_complexity Low_complexity 3 149 0 273 197 0 0 chr3 13824012 13824078 -213700500 + (CCG)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr3 13824358 13824380 -213700198 + GC_rich Low_complexity Low_complexity 1 22 0 440 271 167 21 chr3 13825639 13825920 -213698658 - L2 LINE L2 0 3272 2951 212 323 173 19 chr3 13826039 13826299 -213698279 - L2 LINE L2 -512 2802 2503 491 263 78 39 chr3 13827163 13827276 -213697302 - MIR SINE MIR -40 222 96 1928 146 36 3 chr3 13827276 13827578 -213697000 - AluJb SINE Alu 0 312 1 491 263 78 39 chr3 13827578 13827669 -213696909 - MIR SINE MIR -166 96 10 2484 77 13 0 chr3 13828270 13828570 -213696008 - AluSc SINE Alu -5 304 1 858 206 126 23 chr3 13829603 13829817 -213694761 - MIR SINE MIR -2 260 25 221 333 111 15 chr3 13830148 13830283 -213694295 - MIR SINE MIR -67 195 48 593 249 134 9 chr3 13830454 13830671 -213693907 + MIR SINE MIR 18 261 -1 653 255 74 35 chr3 13830967 13831198 -213693380 + MIR SINE MIR 11 250 -12 203 162 0 0 chr3 13832050 13832087 -213692491 + GA-rich Low_complexity Low_complexity 2 38 0 183 280 40 0 chr3 13833381 13833431 -213691147 - L2 LINE L2 0 3272 3221 1532 61 0 0 chr3 13833739 13833920 -213690658 + AluY SINE Alu 120 300 -11 184 261 43 43 chr3 13833950 13834019 -213690559 - MIR SINE MIR -124 84 16 503 248 45 13 chr3 13834912 13835080 -213689498 - MIR3 SINE MIR -48 160 25 393 247 17 0 chr3 13836859 13836968 -213687610 - MIR3 SINE MIR -12 196 84 453 258 97 46 chr3 13840439 13840656 -213683922 - MIR SINE MIR -33 229 2 2466 62 0 3 chr3 13841092 13841384 -213683194 + AluSc SINE Alu 1 291 -18 1075 124 162 5 chr3 13842905 13843090 -213681488 - AluJb SINE Alu -14 298 85 655 201 82 0 chr3 13843488 13843647 -213680931 + MIR SINE MIR 90 261 -1 413 188 178 10 chr3 13843719 13843820 -213680758 - L2 LINE L2 -1 3312 3195 715 233 86 65 chr3 13844456 13844688 -213679890 + MIR SINE MIR 1 237 -25 406 35 0 0 chr3 13844759 13844816 -213679762 + AluY SINE Alu 249 305 -7 2178 114 10 0 chr3 13845032 13845329 -213679249 + AluSx SINE Alu 1 300 -12 2128 111 27 24 chr3 13845333 13845631 -213678947 + AluSq SINE Alu 1 299 -14 2584 57 0 7 chr3 13845635 13845936 -213678642 + AluY SINE Alu 1 299 -12 265 307 40 62 chr3 13845936 13846086 -213678492 + MIR SINE MIR 47 192 -70 383 249 93 78 chr3 13846086 13846119 -213678459 + MIR SINE MIR 2 33 -229 2005 141 0 10 chr3 13846119 13846417 -213678161 + AluJo SINE Alu 1 295 -17 383 249 93 78 chr3 13846417 13846640 -213677938 + MIR SINE MIR 33 262 0 638 224 0 7 chr3 13847485 13847628 -213676950 - FLAM_C SINE Alu 0 143 2 2349 90 10 3 chr3 13847725 13848025 -213676553 - AluSc SINE Alu -7 302 1 451 302 43 0 chr3 13848089 13848228 -213676350 + MIR SINE MIR 26 170 -92 2343 88 10 0 chr3 13848299 13848596 -213675982 + AluSg SINE Alu 1 300 -10 1283 173 32 22 chr3 13848660 13848938 -213675640 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 13848975 13849016 -213675562 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 13849016 13849323 -213675255 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 13849323 13849387 -213675191 + Charlie5 DNA MER1_type 97 163 -2461 2012 143 10 3 chr3 13849422 13849730 -213674848 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 13849737 13849888 -213674690 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 13851530 13851761 -213672817 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 13852155 13852456 -213672122 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 13853033 13853091 -213671487 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 13853065 13853142 -213671436 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 13854535 13854699 -213669879 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 13854814 13854947 -213669631 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 13855544 13855760 -213668818 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 13856298 13856342 -213668236 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 13856996 13857099 -213667479 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 13857214 13857275 -213667303 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 13857557 13857787 -213666791 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 13857803 13857934 -213666644 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 13858127 13858439 -213666139 + AluSp SINE Alu 1 313 0 296 313 78 9 chr3 13859867 13859982 -213664596 - MIR SINE MIR -119 143 21 281 323 57 16 chr3 13860090 13860214 -213664364 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 13861862 13862030 -213662548 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 13863717 13863830 -213660748 + L2 LINE L2 2716 2826 -488 2264 55 29 0 chr3 13863861 13864161 -213660417 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 13864170 13864281 -213660297 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 13864465 13864496 -213660082 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 13864807 13864901 -213659677 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 13864970 13864996 -213659582 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 13865078 13865152 -213659426 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 13866231 13866256 -213658322 + GC_rich Low_complexity Low_complexity 1 25 0 579 278 136 0 chr3 13867163 13867354 -213657224 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 13867354 13867543 -213657035 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 13869876 13869988 -213654590 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 13870572 13870871 -213653707 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 13872855 13872964 -213651614 + FLAM_C SINE Alu 9 117 -26 2350 110 0 0 chr3 13873967 13874275 -213650303 + AluSx SINE Alu 1 308 -4 5577 166 45 12 chr3 13874275 13875310 -213649268 - MER57-int LTR ERV1 -4063 3474 2405 673 146 19 19 chr3 13875312 13875470 -213649108 + CT-rich Low_complexity Low_complexity 1 158 0 2066 122 29 52 chr3 13875470 13875753 -213648825 - MER57-int LTR ERV1 -4355 1908 1635 1800 111 111 0 chr3 13875753 13876023 -213648555 - AluSx SINE Alu -12 300 1 2066 122 29 52 chr3 13876023 13876124 -213648454 - MER57-int LTR ERV1 -4628 1635 1533 302 0 0 0 chr3 13876139 13876173 -213648405 - MER57-int LTR ERV1 -4695 1568 1535 2205 87 45 7 chr3 13876173 13876462 -213648116 - AluSx SINE Alu -12 300 1 263 250 269 0 chr3 13876689 13876797 -213647781 - MER5A DNA MER1_type 0 189 53 441 239 22 45 chr3 13877291 13877425 -213647153 - MIR SINE MIR -124 138 8 196 329 52 58 chr3 13877478 13877633 -213646945 - MIR3 SINE MIR -54 154 1 2226 97 10 3 chr3 13878305 13878603 -213645975 - AluSx SINE Alu -12 300 1 1187 126 277 0 chr3 13878603 13878834 -213645744 - AluSx SINE Alu -7 295 1 1039 162 241 9 chr3 13878847 13879075 -213645503 - AluSg1 SINE Alu -16 293 13 2060 118 3 20 chr3 13879291 13879428 -213645150 + AluSx SINE Alu 1 139 -173 2337 94 0 3 chr3 13879428 13879725 -213644853 + AluSc SINE Alu 1 296 -13 2060 118 3 20 chr3 13879725 13879883 -213644695 + AluSx SINE Alu 139 291 -21 420 106 91 0 chr3 13879894 13879960 -213644618 + HY1 scRNA scRNA 2 73 -39 1956 173 0 3 chr3 13880155 13880468 -213644110 + AluJo SINE Alu 1 312 0 2245 104 3 7 chr3 13880469 13880776 -213643802 + AluSx SINE Alu 1 306 -6 293 263 13 13 chr3 13880781 13880857 -213643721 - MER5A DNA MER1_type -65 124 49 2196 115 3 0 chr3 13882365 13882661 -213641917 + AluSx SINE Alu 1 297 -15 2284 86 17 0 chr3 13882749 13883041 -213641537 + AluSg SINE Alu 1 297 -13 278 239 11 57 chr3 13883076 13883164 -213641414 - MIR SINE MIR -81 181 98 632 224 51 67 chr3 13883192 13883505 -213641073 - L1MC5 LINE L1 -30 7931 7624 1931 157 0 7 chr3 13883717 13884022 -213640556 - AluJo SINE Alu -9 303 1 1440 148 42 101 chr3 13884097 13884115 -213640463 + LTR54 LTR ERV1 1 19 -491 1721 156 39 39 chr3 13884115 13884423 -213640155 + AluJb SINE Alu 1 308 -4 1440 148 42 101 chr3 13884423 13884670 -213639908 + LTR54 LTR ERV1 19 279 -231 2149 126 0 40 chr3 13884670 13884995 -213639583 - AluSx SINE Alu 0 312 1 1440 148 42 101 chr3 13884995 13885070 -213639508 + LTR54 LTR ERV1 279 357 -153 2399 77 0 26 chr3 13885070 13885381 -213639197 + AluY SINE Alu 1 303 -8 1440 148 42 101 chr3 13885381 13885436 -213639142 + LTR54 LTR ERV1 357 376 -134 2128 120 0 10 chr3 13885436 13885564 -213639014 + AluSx SINE Alu 8 136 -176 2249 113 0 0 chr3 13885564 13885856 -213638722 + AluSq SINE Alu 1 292 -21 2128 120 0 10 chr3 13885856 13886035 -213638543 + AluSx SINE Alu 136 312 0 282 247 120 10 chr3 13886075 13886227 -213638351 - L1MC/D LINE L1 -609 5553 5428 1700 184 4 0 chr3 13886282 13886588 -213637990 - AluJo SINE Alu 0 315 9 856 213 127 8 chr3 13886643 13886911 -213637667 - L1ME1 LINE L1 -4 6162 5863 622 246 27 0 chr3 13886902 13887089 -213637489 - L1MC/D LINE L1 -725 5445 5254 * 3894 101 17 124 chr3 13887095 13887181 -213637397 + LTR8 LTR ERV1 1 95 -596 6806 58 6 0 chr3 13887181 13888251 -213636327 - L1PA6 LINE L1 -3 6151 5079 3894 101 17 124 chr3 13888251 13888869 -213635709 + LTR8 LTR ERV1 95 778 87 2611 49 0 10 chr3 13888869 13889174 -213635404 - AluY SINE Alu -9 302 1 2273 83 4 0 chr3 13889175 13889452 -213635126 - AluSp SINE Alu -33 280 3 3894 101 17 124 chr3 13889452 13889518 -213635060 + LTR8 LTR ERV1 620 691 0 8752 107 73 27 chr3 13889518 13889693 -213634885 + HUERS-P1 LTR ERV1 1 166 -6097 2397 69 0 23 chr3 13889693 13889997 -213634581 - AluY SINE Alu -14 297 1 8752 107 73 27 chr3 13889997 13890996 -213633582 + HUERS-P1 LTR ERV1 166 1259 -5004 495 0 0 0 chr3 13890996 13891051 -213633527 + (TC)n Simple_repeat Simple_repeat 2 56 0 8752 107 73 27 chr3 13891051 13891353 -213633225 + HUERS-P1 LTR ERV1 1259 1546 -4717 2345 105 0 0 chr3 13891354 13891658 -213632920 + AluSx SINE Alu 1 304 -8 336 238 0 0 chr3 13891666 13891729 -213632849 + L1MC4 LINE L1 6641 6703 -1339 * 369 326 0 0 chr3 13891700 13891789 -213632789 - L1MC4 LINE L1 -1340 6702 6614 * 387 277 40 0 chr3 13891748 13891849 -213632729 + L1MC4 LINE L1 6615 6719 -1323 311 152 76 15 chr3 13891823 13891889 -213632689 + L1MCa LINE L1 1995 2064 -4362 * 2195 189 35 36 chr3 13892190 13892710 -213631868 - LTR40a LTR ERVL 0 519 1 305 221 39 39 chr3 13892929 13893033 -213631545 + MIR SINE MIR 81 184 -78 939 311 128 28 chr3 13893492 13894309 -213630269 - L2 LINE L2 -99 3214 2480 690 187 0 22 chr3 13894309 13894443 -213630135 + AluJo/FLAM SINE Alu 3 133 -169 2556 83 3 0 chr3 13894443 13894755 -213629823 + AluSp SINE Alu 1 313 0 939 311 128 28 chr3 13894755 13894766 -213629812 - L2 LINE L2 -832 2481 2236 203 364 0 43 chr3 13894850 13895037 -213629541 + C-rich Low_complexity Low_complexity 1 179 0 * 209 343 6 40 chr3 13894902 13895077 -213629501 + CT-rich Low_complexity Low_complexity 2 170 0 496 278 163 47 chr3 13895088 13895537 -213629041 - L2 LINE L2 -1104 2210 1710 655 250 6 18 chr3 13896357 13896525 -213628053 - MIR SINE MIR 0 262 97 212 273 167 0 chr3 13896818 13896884 -213627694 - MIR SINE MIR -117 145 69 211 301 0 58 chr3 13897326 13897482 -213627096 + C-rich Low_complexity Low_complexity 3 149 0 273 197 0 0 chr3 13897848 13897914 -213626664 + (CCG)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr3 13898194 13898216 -213626362 + GC_rich Low_complexity Low_complexity 1 22 0 440 271 167 21 chr3 13899475 13899756 -213624822 - L2 LINE L2 0 3272 2951 212 323 173 19 chr3 13899875 13900135 -213624443 - L2 LINE L2 -512 2802 2503 491 263 78 39 chr3 13900999 13901112 -213623466 - MIR SINE MIR -40 222 96 1928 146 36 3 chr3 13901112 13901414 -213623164 - AluJb SINE Alu 0 312 1 491 263 78 39 chr3 13901414 13901505 -213623073 - MIR SINE MIR -166 96 10 2475 77 13 0 chr3 13902106 13902405 -213622173 - AluSc SINE Alu -6 303 1 858 206 126 23 chr3 13903438 13903652 -213620926 - MIR SINE MIR -2 260 25 221 333 111 15 chr3 13903983 13904118 -213620460 - MIR SINE MIR -67 195 48 593 249 134 9 chr3 13904289 13904506 -213620072 + MIR SINE MIR 18 261 -1 653 255 74 35 chr3 13904802 13905033 -213619545 + MIR SINE MIR 11 250 -12 203 162 0 0 chr3 13905885 13905922 -213618656 + GA-rich Low_complexity Low_complexity 2 38 0 183 280 40 0 chr3 13907216 13907266 -213617312 - L2 LINE L2 0 3272 3221 1532 61 0 0 chr3 13907574 13907755 -213616823 + AluY SINE Alu 120 300 -11 184 261 43 43 chr3 13907785 13907854 -213616724 - MIR SINE MIR -124 84 16 503 248 45 13 chr3 13908747 13908915 -213615663 - MIR3 SINE MIR -48 160 25 397 247 17 0 chr3 13910694 13910803 -213613775 - MIR3 SINE MIR -12 196 84 462 313 65 14 chr3 13914274 13914491 -213610087 - MIR SINE MIR -33 229 2 2329 62 0 3 chr3 13914927 13915219 -213609359 + AluSc SINE Alu 1 291 -18 998 124 162 5 chr3 13916740 13916925 -213607653 - AluJb SINE Alu -14 298 85 646 201 82 0 chr3 13917323 13917482 -213607096 + MIR SINE MIR 90 261 -1 414 188 178 10 chr3 13917554 13917655 -213606923 - L2 LINE L2 -1 3312 3195 716 233 86 65 chr3 13918291 13918523 -213606055 + MIR SINE MIR 1 237 -25 428 35 0 0 chr3 13918594 13918651 -213605927 + AluY SINE Alu 249 305 -7 2051 114 10 0 chr3 13918867 13919164 -213605414 + AluSx SINE Alu 1 300 -12 1998 111 27 24 chr3 13919168 13919466 -213605112 + AluSq SINE Alu 1 299 -14 2437 57 0 7 chr3 13919469 13919770 -213604808 + AluY SINE Alu 1 299 -12 270 326 75 14 chr3 13919770 13919917 -213604661 + MIR SINE MIR 47 202 -60 359 245 93 78 chr3 13919920 13919953 -213604625 + MIR SINE MIR 2 33 -229 1880 141 0 10 chr3 13919953 13920251 -213604327 + AluJo SINE Alu 1 295 -17 359 245 93 78 chr3 13920251 13920474 -213604104 + MIR SINE MIR 33 262 0 696 224 0 7 chr3 13921318 13921461 -213603117 - FLAM_C SINE Alu 0 143 2 2211 90 10 3 chr3 13921558 13921858 -213602720 - AluSc SINE Alu -7 302 1 455 318 47 0 chr3 13921922 13922070 -213602508 + MIR SINE MIR 26 180 -82 2004 108 52 0 chr3 13922133 13922419 -213602159 + AluSx SINE Alu 1 301 -11 216 293 13 0 chr3 13924109 13924184 -213600394 + (TA)n Simple_repeat Simple_repeat 1 76 0 725 143 110 0 chr3 13924199 13924353 -213600225 - MIR SINE MIR -2 260 90 852 335 82 17 chr3 13924360 13924730 -213599848 + L2 LINE L2 2295 2717 -597 2155 121 0 0 chr3 13924730 13925028 -213599550 - AluSx SINE Alu -14 298 1 852 335 82 17 chr3 13925028 13925233 -213599345 + L2 LINE L2 2717 2907 -407 2305 88 0 10 chr3 13926059 13926366 -213598212 + AluSg1 SINE Alu 1 304 -5 1056 235 81 46 chr3 13926990 13927424 -213597154 + L2 LINE L2 2845 3293 -20 181 194 16 16 chr3 13927446 13927508 -213597070 + GA-rich Low_complexity Low_complexity 1 62 0 541 293 87 5 chr3 13928112 13928320 -213596258 - MIR SINE MIR -18 244 20 259 248 25 93 chr3 13928325 13928456 -213596122 + L1ME4a LINE L1 5971 6091 -30 1819 115 38 54 chr3 13928456 13928770 -213595808 - AluSq SINE Alu -4 309 1 259 248 25 93 chr3 13928770 13928799 -213595779 + L1ME4a LINE L1 6091 6120 -1 228 266 16 0 chr3 13928894 13928958 -213595620 - MIR SINE MIR -119 143 79 1021 152 11 43 chr3 13929344 13929528 -213595050 + FAM SINE Alu 1 42 -7 2111 120 0 0 chr3 13929809 13930100 -213594478 + AluSq SINE Alu 1 291 -22 328 259 46 56 chr3 13930108 13930216 -213594362 + L2 LINE L2 3117 3223 -49 736 221 7 0 chr3 13930236 13930381 -213594197 + MIR SINE MIR 105 250 -12 2040 108 3 54 chr3 13930400 13930716 -213593862 - AluSp SINE Alu -12 301 2 1636 83 4 18 chr3 13930720 13930949 -213593629 - AluSp SINE Alu 0 313 88 269 261 15 0 chr3 13930973 13931038 -213593540 + MIR SINE MIR 58 123 -85 2191 80 28 0 chr3 13931061 13931347 -213593231 + AluSx SINE Alu 5 298 -14 325 299 31 0 chr3 13931695 13931792 -213592786 - MIR SINE MIR -74 188 89 1310 217 173 8 chr3 13932121 13932485 -213592093 + MLT1K LTR MaLR 122 545 -43 250 247 68 14 chr3 13932517 13932590 -213591988 + MER5A DNA MER1_type 31 107 -82 298 289 240 0 chr3 13932603 13932707 -213591871 + MER5A DNA MER1_type 61 189 0 573 279 118 60 chr3 13932885 13933465 -213591113 + L2 LINE L2 2612 3227 -45 224 220 44 11 chr3 13933955 13934046 -213590532 + (TTCA)n Simple_repeat Simple_repeat 1 94 0 180 77 0 0 chr3 13934109 13934135 -213590443 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 227 250 0 0 chr3 13935312 13935376 -213589202 + (CA)n Simple_repeat Simple_repeat 2 65 0 278 290 93 0 chr3 13936260 13936367 -213588211 - MIR SINE MIR -119 143 27 2000 139 13 3 chr3 13937083 13937433 -213587145 - AluJo SINE Alu 0 353 1 313 313 90 0 chr3 13937505 13937639 -213586939 + MIR SINE MIR 86 231 -31 2297 87 7 3 chr3 13937916 13938226 -213586352 - AluSx SINE Alu -1 311 1 244 228 38 25 chr3 13938416 13938495 -213586083 - MLT1K LTR MaLR -12 576 497 305 192 26 13 chr3 13938944 13939022 -213585556 - L1ME4a LINE L1 -97 6024 5946 1830 131 0 0 chr3 13939095 13939354 -213585224 + AluSx SINE Alu 41 299 -13 2179 79 0 52 chr3 13939356 13939684 -213584894 + AluY SINE Alu 1 311 0 1456 166 3 48 chr3 13939790 13940103 -213584475 - AluJb SINE Alu 0 312 13 2154 115 3 0 chr3 13940237 13940542 -213584036 + AluSx SINE Alu 1 306 -6 318 256 174 12 chr3 13940574 13940746 -213583832 + L1ME LINE L1 5146 5345 -801 599 317 37 17 chr3 13940754 13941061 -213583517 + L1ME LINE L1 5373 5699 -422 1918 108 38 14 chr3 13941089 13941377 -213583201 + AluSx SINE Alu 14 308 -4 318 285 180 48 chr3 13941628 13941669 -213582909 + L2 LINE L2 2729 2763 -509 791 181 30 91 chr3 13941669 13941753 -213582825 - MER5A DNA MER1_type -2 187 99 2198 95 7 0 chr3 13941753 13942048 -213582530 - AluSx SINE Alu -15 297 1 791 181 30 91 chr3 13942048 13942162 -213582416 - MER5A DNA MER1_type -90 99 1 318 285 180 48 chr3 13942162 13942468 -213582110 + L2 LINE L2 2763 3113 -159 2579 48 0 0 chr3 13942487 13942798 -213581780 - AluY SINE Alu 0 311 1 276 369 76 0 chr3 13943560 13943717 -213580861 + MIR SINE MIR 80 248 -14 416 235 41 0 chr3 13943987 13944085 -213580493 - MER91C DNA MER1_type 0 140 39 499 201 148 58 chr3 13944099 13944288 -213580290 + MIR SINE MIR 31 236 -26 913 303 133 25 chr3 13944516 13944988 -213579590 - MLT1K LTR MaLR -10 578 56 187 311 0 14 chr3 13945003 13945077 -213579501 + L2 LINE L2 2987 3059 -213 443 317 76 51 chr3 13945346 13945622 -213578956 + MLT1L LTR MaLR 176 457 -158 1236 33 26 0 chr3 13945622 13945774 -213578804 + L1PA5 LINE L1 5999 6154 0 443 317 76 51 chr3 13945774 13945927 -213578651 + MLT1L LTR MaLR 457 605 -10 755 118 8 39 chr3 13946851 13946966 -213577612 + L1MC1 LINE L1 6211 6323 -10 1622 168 35 3 chr3 13946966 13947251 -213577327 + AluJo SINE Alu 1 294 -18 755 118 8 39 chr3 13947251 13947262 -213577316 + L1MC1 LINE L1 6323 6333 0 746 175 8 0 chr3 13947273 13947393 -213577185 + FLAM_C SINE Alu 1 121 -12 219 125 0 0 chr3 13947406 13947446 -213577132 + (CA)n Simple_repeat Simple_repeat 2 41 0 429 250 191 0 chr3 13947462 13947614 -213576964 - MIR SINE MIR -71 191 11 256 347 75 0 chr3 13947761 13947908 -213576670 - MIR3 SINE MIR -11 197 40 1797 148 20 10 chr3 13947940 13948245 -213576333 - AluJo SINE Alu -4 308 1 508 325 93 0 chr3 13948399 13948593 -213575985 + MIR SINE MIR 51 262 0 1225 102 0 0 chr3 13948748 13948914 -213575664 + AluSg/x SINE Alu 133 298 -14 240 280 10 0 chr3 13949211 13949311 -213575267 + L1MC4 LINE L1 7941 8041 -1 406 196 28 9 chr3 13949336 13949443 -213575135 + L1MB2 LINE L1 6047 6155 -16 811 110 0 0 chr3 13949443 13949552 -213575026 - AluSp/q SINE Alu -29 284 176 2380 65 0 7 chr3 13949603 13949910 -213574668 + AluY SINE Alu 1 305 -6 242 267 50 75 chr3 13949929 13950049 -213574529 - MER5B DNA MER1_type -55 123 7 24 32 0 0 chr3 13950568 13950599 -213573979 + AT_rich Low_complexity Low_complexity 1 31 0 283 313 54 71 chr3 13950623 13950691 -213573887 - L1ME4a LINE L1 -122 5999 5931 2221 109 3 0 chr3 13950691 13951003 -213573575 + AluSq SINE Alu 1 313 0 283 313 54 71 chr3 13951003 13951270 -213573308 - L1ME4a LINE L1 -190 5931 5670 198 286 0 0 chr3 13951784 13951833 -213572745 - L2 LINE L2 -11 3261 3213 593 297 73 52 chr3 13951837 13952038 -213572540 + MLT1J1 LTR MaLR 1 213 -233 2373 74 0 10 chr3 13952038 13952348 -213572230 - AluY SINE Alu -4 307 1 593 297 73 52 chr3 13952348 13952473 -213572105 + MLT1J1 LTR MaLR 213 334 -112 195 292 46 85 chr3 13952519 13952649 -213571929 - MIR SINE MIR -57 151 27 * 257 299 259 6 chr3 13952605 13952779 -213571799 + MIR SINE MIR 19 236 -26 427 257 118 0 chr3 13952790 13952934 -213571644 + L1ME3A LINE L1 5978 6138 -32 2409 66 0 0 chr3 13954351 13954654 -213569924 - AluY SINE Alu -8 303 1 1904 132 0 7 chr3 13954654 13954934 -213569644 - AluSx SINE Alu -18 294 16 2084 121 3 3 chr3 13954939 13955245 -213569333 - AluSx SINE Alu -6 306 1 211 246 46 31 chr3 13956171 13956236 -213568342 + L2 LINE L2 2957 3022 -250 249 336 80 8 chr3 13956619 13956744 -213567834 + L2 LINE L2 3179 3312 -1 661 267 21 69 chr3 13956759 13956999 -213567579 - MIR SINE MIR -3 259 30 384 316 130 9 chr3 13957741 13957956 -213566622 - MIR SINE MIR -20 242 2 580 293 0 7 chr3 13958117 13958264 -213566314 + MIR SINE MIR 11 156 -106 472 194 20 0 chr3 13958293 13958391 -213566187 + MIR SINE MIR 131 230 -32 219 261 57 11 chr3 13959921 13960009 -213564569 + L2 LINE L2 2146 2237 -1077 1333 213 56 39 chr3 13960288 13960327 -213564251 - L1ME1 LINE L1 -37 6129 6092 2295 76 0 0 chr3 13960327 13960618 -213563960 + AluY SINE Alu 1 291 -20 1333 213 56 39 chr3 13960618 13960633 -213563945 - L1ME1 LINE L1 -74 6092 6079 1149 171 0 0 chr3 13960633 13960803 -213563775 + FAM SINE Alu 1 170 -15 1333 213 56 39 chr3 13960803 13961104 -213563474 - L1ME1 LINE L1 -87 6079 5767 340 113 0 0 chr3 13961113 13961166 -213563412 - Alu SINE Alu 0 300 248 375 272 29 0 chr3 13961711 13961814 -213562764 + MIR SINE MIR 97 202 -60 680 187 88 103 chr3 13961837 13962036 -213562542 + MIR SINE MIR 5 201 -61 2395 95 0 0 chr3 13962036 13962331 -213562247 - AluSx SINE Alu -17 295 1 680 187 88 103 chr3 13962331 13962393 -213562185 + MIR SINE MIR 201 262 0 236 287 25 82 chr3 13962874 13962996 -213561582 - MER5B DNA MER1_type -29 149 35 2265 93 3 0 chr3 13962999 13963289 -213561289 - AluY SINE Alu -20 291 1 411 272 72 21 chr3 13963370 13963937 -213560641 - L1MC4 LINE L1 -413 7629 7098 1962 84 95 7 chr3 13963974 13964259 -213560319 - AluSx SINE Alu -1 311 2 2241 118 3 7 chr3 13964269 13964575 -213560003 - AluSq SINE Alu -8 305 1 180 88 59 29 chr3 13964580 13964614 -213559964 + MER5A DNA MER1_type 131 165 -24 1062 154 22 22 chr3 13965870 13966052 -213558526 + AluJb SINE Alu 121 302 -10 2252 77 0 4 chr3 13966052 13966326 -213558252 + AluSq SINE Alu 33 305 -8 259 162 73 88 chr3 13966328 13966396 -213558182 - MARNA DNA Mariner -70 516 450 537 256 81 11 chr3 13966559 13966735 -213557843 - MIR SINE MIR -62 146 5 335 256 35 0 chr3 13967797 13967883 -213556695 - MIR SINE MIR -61 147 59 373 227 92 87 chr3 13968133 13968219 -213556359 + MLT1D LTR MaLR 1 85 -420 1751 163 38 7 chr3 13968219 13968507 -213556071 + AluJb SINE Alu 1 297 -15 373 227 92 87 chr3 13968507 13968605 -213555973 + MLT1D LTR MaLR 85 186 -319 2305 102 7 3 chr3 13968611 13968915 -213555663 + AluSx SINE Alu 5 309 -3 1050 159 74 101 chr3 13968915 13969173 -213555405 + AluJo SINE Alu 45 295 -17 596 176 16 102 chr3 13969173 13969360 -213555218 + AluJo SINE Alu 42 212 -100 2046 144 7 13 chr3 13969395 13969700 -213554878 - AluJb SINE Alu -9 303 1 1931 93 66 0 chr3 13969714 13969972 -213554606 - AluSg SINE Alu -15 295 21 440 281 134 6 chr3 13970003 13970167 -213554411 - MIR SINE MIR -59 203 19 793 212 115 12 chr3 13970571 13970911 -213553667 + MLT1J2 LTR MaLR 1 427 -19 402 292 15 8 chr3 13970957 13971087 -213553491 - MIR3 SINE MIR -7 201 71 254 320 40 24 chr3 13971438 13971563 -213553015 + MLT1K LTR MaLR 69 195 -393 2267 112 0 0 chr3 13971774 13972069 -213552509 - AluSx SINE Alu -17 295 1 1864 117 4 4 chr3 13972078 13972334 -213552244 - AluSg SINE Alu -17 293 38 208 233 50 17 chr3 13973442 13973502 -213551076 - MIR SINE MIR -96 166 105 1357 209 23 36 chr3 13973502 13973671 -213550907 - AluJo SINE Alu -9 303 138 189 0 0 0 chr3 13973671 13973692 -213550886 + (TG)n Simple_repeat Simple_repeat 2 22 0 1357 209 23 36 chr3 13973692 13973823 -213550755 - AluJo SINE Alu -174 138 7 758 148 31 0 chr3 13973831 13973959 -213550619 - FLAM_C SINE Alu 0 133 2 599 261 186 36 chr3 13974564 13974951 -213549627 + L2 LINE L2 2869 3313 0 273 313 125 10 chr3 13974964 13975060 -213549518 - MIR SINE MIR -135 127 21 207 0 0 0 chr3 13975079 13975102 -213549476 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2130 98 0 4 chr3 13975102 13975379 -213549199 - AluSx SINE Alu -32 280 5 201 263 105 13 chr3 13975901 13975977 -213548601 - MIR3 SINE MIR -17 191 109 2208 146 56 30 chr3 13976423 13976855 -213547723 + LTR8A LTR ERV1 1 443 -284 687 169 12 31 chr3 13976856 13977016 -213547562 + AluY SINE Alu 64 220 -91 257 164 179 30 chr3 13977033 13977100 -213547478 - MIR SINE MIR -115 93 17 396 292 41 10 chr3 13977569 13977717 -213546861 - MIR SINE MIR -63 145 45 309 320 27 0 chr3 13978681 13979015 -213545563 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 200 135 0 58 chr3 13979054 13979106 -213545472 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2453 53 0 7 chr3 13979199 13979507 -213545071 + AluY SINE Alu 1 306 0 358 320 17 22 chr3 13979511 13979689 -213544889 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 * 372 336 0 0 chr3 13979665 13979802 -213544776 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 799 267 30 13 chr3 13979811 13980043 -213544535 + MIR SINE MIR 9 244 -18 261 0 0 0 chr3 13980049 13980078 -213544500 + (A)n Simple_repeat Simple_repeat 1 29 0 338 240 113 53 chr3 13981824 13981884 -213542694 + MIR SINE MIR 87 142 -120 2428 71 7 3 chr3 13981884 13982179 -213542399 - AluSp SINE Alu -17 296 1 338 240 113 53 chr3 13982179 13982268 -213542310 + MIR SINE MIR 142 245 -17 415 236 286 0 chr3 13982270 13982410 -213542168 + MER5A DNA MER1_type 4 183 -6 271 339 11 23 chr3 13982669 13982846 -213541732 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 808 143 12 42 chr3 13983065 13983233 -213541345 + AluSg/x SINE Alu 133 295 -15 295 229 12 48 chr3 13983234 13983317 -213541261 + MER5A DNA MER1_type 108 187 -2 2040 108 38 14 chr3 13983609 13983897 -213540681 - AluSx SINE Alu -4 308 14 578 312 79 19 chr3 13983925 13984320 -213540258 - L1ME LINE L1 -422 5699 5255 2297 114 3 0 chr3 13984444 13984750 -213539828 - AluSx SINE Alu -5 307 1 1553 166 3 48 chr3 13984884 13985197 -213539381 + AluJb SINE Alu 13 312 0 2383 69 0 25 chr3 13985302 13985619 -213538959 - AluY SINE Alu 0 311 3 181 237 0 0 chr3 13985848 13985886 -213538692 - MER5B DNA MER1_type -137 41 4 275 307 91 0 chr3 13985897 13985985 -213538593 + L2 LINE L2 3139 3234 -38 957 97 0 0 chr3 13985999 13986123 -213538455 + FLAM_C SINE Alu 19 142 -1 708 247 163 45 chr3 13986510 13986866 -213537712 + L2 LINE L2 2916 3313 0 396 293 114 0 chr3 13986912 13987079 -213537499 - MIR SINE MIR 0 262 77 823 193 27 16 chr3 13987087 13987274 -213537304 + MER5A DNA MER1_type 1 189 0 497 89 129 20 chr3 13987302 13987403 -213537175 - L1MB7 LINE L1 0 6184 6073 192 77 0 0 chr3 13987427 13987453 -213537125 + (A)n Simple_repeat Simple_repeat 1 26 0 1828 63 0 9 chr3 13987456 13987678 -213536900 + AluSq SINE Alu 1 220 -93 699 92 0 23 chr3 13987679 13987831 -213536747 + AluSg/x SINE Alu 118 310 0 1227 30 0 0 chr3 13987837 13987969 -213536609 + AluY SINE Alu 1 132 -179 2341 88 7 10 chr3 13988760 13989067 -213535511 + AluY SINE Alu 1 306 -5 1730 77 0 9 chr3 13989072 13989294 -213535284 + AluSq SINE Alu 1 220 -93 325 114 0 0 chr3 13989295 13989339 -213535239 + AluSc SINE Alu 116 159 -140 699 83 0 28 chr3 13989339 13989447 -213535131 + AluSg/x SINE Alu 206 310 0 2569 68 0 3 chr3 13989458 13989767 -213534811 + AluY SINE Alu 1 308 -3 2484 80 0 6 chr3 13989774 13990086 -213534492 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 13990095 13990464 -213534114 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 13990873 13991154 -213533424 + AluSx SINE Alu 1 281 -31 2186 122 10 6 chr3 13991156 13991467 -213533111 + AluSx SINE Alu 1 312 0 242 304 69 65 chr3 13991471 13991718 -213532860 - L1ME4a LINE L1 -187 5934 5687 191 286 0 0 chr3 13992248 13992297 -213532281 - L2 LINE L2 -11 3261 3213 540 284 83 61 chr3 13992301 13992502 -213532076 + MLT1J1 LTR MaLR 1 213 -233 2522 74 0 10 chr3 13992502 13992812 -213531766 - AluY SINE Alu -4 307 1 540 284 83 61 chr3 13992812 13992937 -213531641 + MLT1J1 LTR MaLR 213 334 -112 187 274 53 80 chr3 13993000 13993113 -213531465 - MIR SINE MIR -72 136 27 * 241 299 259 6 chr3 13993069 13993243 -213531335 + MIR SINE MIR 19 236 -26 424 257 118 0 chr3 13993254 13993398 -213531180 + L1ME3A LINE L1 5978 6138 -32 217 299 19 58 chr3 13994356 13994510 -213530068 - L2 LINE L2 -181 3091 2944 2626 56 0 0 chr3 13994815 13995118 -213529460 - AluY SINE Alu -8 303 1 1197 178 82 10 chr3 13995118 13995421 -213529157 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13995425 13995469 -213529109 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 13995480 13995610 -213528968 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13995748 13995790 -213528788 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2432 97 0 3 chr3 13995847 13996157 -213528421 - AluSx SINE Alu -3 309 1 242 264 0 0 chr3 13996462 13996515 -213528063 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 13998516 13998648 -213525930 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 13998709 13998825 -213525753 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 13998838 13998938 -213525640 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2558 61 0 0 chr3 13999210 13999506 -213525072 + AluY SINE Alu 1 296 -15 2476 75 0 0 chr3 14000442 14000737 -213523841 - AluY SINE Alu -16 295 1 808 129 0 50 chr3 14000767 14000907 -213523671 + FLAM_C SINE Alu 1 133 0 404 252 28 0 chr3 14000975 14001082 -213523496 - MIR SINE MIR -75 187 78 1912 123 76 4 chr3 14001083 14001360 -213523218 + AluSx SINE Alu 1 297 -15 219 303 30 15 chr3 14001920 14001986 -213522592 - MER91A DNA MER1_type 0 196 130 618 200 77 0 chr3 14002431 14002561 -213522017 - MIR SINE MIR -34 228 89 304 179 0 119 chr3 14002568 14002624 -213521954 + MER116 DNA Mariner 3 47 -33 2214 93 0 17 chr3 14002624 14002925 -213521653 - AluSx SINE Alu -16 296 1 304 179 0 119 chr3 14002925 14002952 -213521626 + MER116 DNA Mariner 47 76 -4 1130 130 0 30 chr3 14003040 14003209 -213521369 - AluSg/x SINE Alu -15 297 134 2304 114 0 7 chr3 14003209 14003517 -213521061 - AluSx SINE Alu -6 306 1 2135 119 0 16 chr3 14003517 14003709 -213520869 - AluSx SINE Alu -2 310 123 198 118 0 0 chr3 14003709 14003743 -213520835 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2135 119 0 16 chr3 14003743 14003861 -213520717 - AluSx SINE Alu -189 123 5 1838 173 0 17 chr3 14004082 14004383 -213520195 - AluJo SINE Alu -16 296 1 287 217 17 0 chr3 14004413 14004473 -213520105 - MIR SINE MIR -70 138 78 261 271 54 47 chr3 14004982 14005111 -213519467 - L2 LINE L2 -51 3262 3133 589 341 57 0 chr3 14005121 14005190 -213519388 - MIR SINE MIR -3 259 195 1952 137 0 44 chr3 14005190 14005359 -213519219 - AluSx SINE Alu -11 301 151 2133 91 31 11 chr3 14005359 14005645 -213518933 - AluSx SINE Alu -18 294 3 1952 137 0 44 chr3 14005645 14005790 -213518788 - AluSx SINE Alu -161 151 1 589 341 57 0 chr3 14005790 14005949 -213518629 - MIR SINE MIR -67 195 18 1006 295 167 16 chr3 14005987 14006960 -213517618 - L2 LINE L2 -263 3009 1879 186 143 0 0 chr3 14007054 14007089 -213517489 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 284 284 62 52 chr3 14008375 14008569 -213516009 - L2 LINE L2 -215 3057 2862 353 234 156 16 chr3 14008793 14008921 -213515657 - MIR SINE MIR -111 151 6 929 149 106 72 chr3 14009414 14009622 -213514956 + AluJb SINE Alu 33 247 -65 304 282 113 8 chr3 14010042 14010166 -213514412 - MIR SINE MIR -85 177 41 591 208 28 71 chr3 14010200 14010412 -213514166 + MER3 DNA MER1_type 2 204 -5 220 301 97 44 chr3 14010423 14010536 -213514042 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 14011342 14011371 -213513207 + (A)n Simple_repeat Simple_repeat 1 29 0 427 300 246 29 chr3 14012176 14012456 -213512122 + MER102b DNA MER1_type 1 341 0 406 303 86 0 chr3 14012482 14012644 -213511934 + MIR SINE MIR 31 206 -56 532 264 120 37 chr3 14012815 14013031 -213511547 - MIR SINE MIR -20 242 9 488 320 115 24 chr3 14014302 14014633 -213509945 + L3 LINE CR1 1145 1505 -72 2101 50 0 0 chr3 14014696 14014934 -213509644 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14014945 14015204 -213509374 + AluSq SINE Alu 35 300 -13 2610 54 0 0 chr3 14015204 14015499 -213509079 + AluY SINE Alu 1 295 -16 2558 61 0 0 chr3 14016433 14016729 -213507849 - AluY SINE Alu -15 296 1 317 340 10 0 chr3 14017001 14017101 -213507477 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 14017114 14017230 -213507348 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 330 349 15 0 chr3 14017291 14017423 -213507155 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 242 264 0 0 chr3 14019424 14019477 -213505101 - L2 LINE L2 -11 3261 3209 2503 89 0 0 chr3 14019782 14020084 -213504494 + AluSx SINE Alu 1 302 -10 459 161 0 0 chr3 14020124 14020205 -213504373 - AluJ/FRAM SINE Alu -7 305 225 189 107 0 0 chr3 14021922 14021950 -213502628 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 * 245 109 22 0 chr3 14021945 14021991 -213502587 + CT-rich Low_complexity Low_complexity 2 48 0 201 318 16 0 chr3 14022082 14022145 -213502433 - L2 LINE L2 -3 3310 3247 1522 251 142 25 chr3 14022146 14022741 -213501837 - L2 LINE L2 -1 3312 2607 2574 84 0 0 chr3 14022741 14023052 -213501526 + AluY SINE Alu 1 311 0 1522 251 142 25 chr3 14023052 14023287 -213501291 - L2 LINE L2 -706 2607 2401 746 183 43 32 chr3 14023292 14023478 -213501100 + AluJo SINE Alu 121 308 -4 289 200 24 136 chr3 14023480 14023605 -213500973 - L2 LINE L2 -921 2393 2283 1572 198 0 42 chr3 14023608 14023921 -213500657 - AluJo SINE Alu -12 300 1 706 233 12 81 chr3 14024667 14024925 -213499653 - L1MA7 LINE L1 -159 6132 5893 432 274 0 0 chr3 14024923 14025036 -213499542 + L1MA7 LINE L1 6173 6285 -6 * 1054 267 44 0 chr3 14026218 14026559 -213498019 - L1M4b LINE L1 -5910 949 594 438 71 43 0 chr3 14026560 14026630 -213497948 + LTR5 LTR ERVK 1 73 -896 6804 82 11 3 chr3 14026630 14027479 -213497099 + LTR5 LTR ERVK 115 969 0 20954 64 2 3 chr3 14027479 14030198 -213494380 + HERVK LTR ERVK 1 2715 -4528 18418 43 2 2 chr3 14030176 14032470 -213492108 + HERVK LTR ERVK 4951 7243 0 * 8072 59 7 21 chr3 14032470 14033453 -213491125 + LTR5 LTR ERVK 1 969 0 256 234 0 0 chr3 14033513 14033577 -213491001 - Charlie5 DNA MER1_type -119 2493 2430 1820 173 29 0 chr3 14033612 14033954 -213490624 - MLT1A1 LTR MaLR -1 364 13 2019 157 0 0 chr3 14034141 14034440 -213490138 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 14034505 14034526 -213490052 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 2232 122 0 7 chr3 14035014 14035317 -213489261 + AluSx SINE Alu 1 301 -11 362 136 0 61 chr3 14035340 14035406 -213489172 + AluJb SINE Alu 21 82 -220 25 31 0 0 chr3 14035406 14035438 -213489140 + AT_rich Low_complexity Low_complexity 1 32 0 1375 142 40 36 chr3 14035443 14035668 -213488910 + AluJb SINE Alu 64 289 -23 2110 116 13 20 chr3 14035677 14035978 -213488600 + AluSx SINE Alu 1 299 -13 1898 79 0 8 chr3 14036136 14036376 -213488202 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14036387 14036646 -213487932 + AluSq SINE Alu 35 300 -13 2547 58 0 0 chr3 14036646 14036940 -213487638 + AluY SINE Alu 1 294 -17 2471 83 3 10 chr3 14037050 14037362 -213487216 - AluSg SINE Alu 0 310 1 2521 96 0 0 chr3 14038080 14038392 -213486186 - AluSx SINE Alu 0 312 1 1793 175 3 16 chr3 14038679 14038982 -213485596 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 14039016 14039140 -213485438 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 14039197 14039273 -213485305 + L2 LINE L2 3238 3313 0 2403 96 0 13 chr3 14039357 14039669 -213484909 + AluSx SINE Alu 1 308 -4 651 193 42 94 chr3 14039961 14040045 -213484533 - MER5A DNA MER1_type -2 187 100 2336 95 7 0 chr3 14040045 14040340 -213484238 - AluSx SINE Alu -15 297 1 651 193 42 94 chr3 14040340 14040447 -213484131 - MER5A DNA MER1_type -89 100 6 283 274 207 40 chr3 14040456 14040756 -213483822 + L2 LINE L2 2766 3113 -159 2574 52 10 0 chr3 14040775 14041083 -213483495 - AluY SINE Alu 0 311 1 2244 90 33 20 chr3 14041668 14041969 -213482609 + AluSq SINE Alu 7 311 -2 2178 108 3 54 chr3 14041976 14042292 -213482286 + AluSp SINE Alu 2 301 -12 732 221 7 0 chr3 14042311 14042456 -213482122 - MIR SINE MIR -12 250 105 326 259 46 56 chr3 14042476 14042584 -213481994 - L2 LINE L2 -49 3223 3117 2246 120 0 0 chr3 14042592 14042883 -213481695 - AluSq SINE Alu -22 291 1 1091 152 11 43 chr3 14043164 14043348 -213481230 - FAM SINE Alu -7 42 1 219 262 16 0 chr3 14043736 14043797 -213480781 + MIR SINE MIR 82 143 -65 245 232 29 94 chr3 14043893 14043922 -213480656 - L1ME4a LINE L1 -1 6120 6091 1942 115 38 54 chr3 14043922 14044236 -213480342 + AluSq SINE Alu 1 309 -4 245 232 29 94 chr3 14044236 14044344 -213480234 - L1ME4a LINE L1 -30 6091 5992 522 290 65 9 chr3 14044366 14044580 -213479998 + MIR SINE MIR 19 244 -18 192 164 0 49 chr3 14045184 14045245 -213479333 + CT-rich Low_complexity Low_complexity 1 58 0 1084 226 91 47 chr3 14045267 14045697 -213478881 - L2 LINE L2 -20 3293 2845 2437 88 0 13 chr3 14046319 14046627 -213477951 - AluSg1 SINE Alu -5 304 1 1192 162 0 0 chr3 14046785 14046958 -213477620 - AluSg/x SINE Alu -13 297 125 303 96 72 0 chr3 14046961 14047044 -213477534 + (TA)n Simple_repeat Simple_repeat 1 89 0 292 48 48 0 chr3 14047044 14047086 -213477492 - AluSg/x SINE Alu -173 127 84 992 165 4 115 chr3 14047086 14047329 -213477249 - AluJo SINE Alu -92 220 5 419 277 55 21 chr3 14047329 14047512 -213477066 - MIR SINE MIR -55 207 16 774 210 0 89 chr3 14048406 14048496 -213476082 - MER3 DNA MER1_type -8 201 105 2124 85 22 63 chr3 14048496 14048812 -213475766 + AluSq SINE Alu 2 304 -9 774 210 0 89 chr3 14048812 14048935 -213475643 - MER3 DNA MER1_type -104 105 7 458 223 192 8 chr3 14049598 14049728 -213474850 - MER5A DNA MER1_type -6 183 30 450 326 67 5 chr3 14049763 14049956 -213474622 - MIR SINE MIR -38 224 20 328 266 13 0 chr3 14050124 14050203 -213474375 + MER5A DNA MER1_type 18 97 -92 2213 104 10 13 chr3 14050785 14051083 -213473495 - AluSg SINE Alu -13 297 1 242 264 0 0 chr3 14051388 14051441 -213473137 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 14053442 14053574 -213471004 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 14053635 14053751 -213470827 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 14053764 14053864 -213470714 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2553 78 0 0 chr3 14054136 14054444 -213470134 + AluY SINE Alu 1 308 -3 250 222 14 42 chr3 14054447 14054519 -213470059 - MIR SINE MIR -116 146 77 198 349 94 7 chr3 14054625 14054774 -213469804 + L2 LINE L2 2871 3032 -240 307 374 32 8 chr3 14055139 14055262 -213469316 + L2 LINE L2 3119 3244 -28 1085 235 30 0 chr3 14055295 14055529 -213469049 - MIR SINE MIR 0 262 22 741 47 16 70 chr3 14055855 14055983 -213468595 + L1PA13 LINE L1 6042 6162 -1 425 318 79 28 chr3 14056058 14056310 -213468268 - L1MEc LINE L1 -3999 2397 2133 231 36 0 0 chr3 14056329 14056357 -213468221 + (TA)n Simple_repeat Simple_repeat 2 29 0 2195 112 0 0 chr3 14056357 14056642 -213467936 - AluSg1 SINE Alu -24 285 1 649 277 47 47 chr3 14056693 14056946 -213467632 - MIR SINE MIR -5 257 5 852 170 50 0 chr3 14057047 14057206 -213467372 + MER2 DNA MER2_type 1 167 -178 1906 132 24 17 chr3 14057217 14057513 -213467065 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 14057535 14057848 -213466730 + AluSg SINE Alu 1 310 0 641 91 0 55 chr3 14058259 14058369 -213466209 - AluSg SINE Alu -205 105 2 457 88 0 55 chr3 14059991 14060082 -213464496 + Alu SINE Alu 224 309 0 1552 166 3 48 chr3 14060187 14060500 -213464078 - AluJb SINE Alu 0 312 13 2448 68 7 3 chr3 14060634 14060928 -213463650 + AluY SINE Alu 1 295 -16 189 0 0 0 chr3 14060935 14060956 -213463622 + (T)n Simple_repeat Simple_repeat 1 21 0 533 268 53 53 chr3 14061543 14061771 -213462807 - L2 LINE L2 -1 3312 3085 293 202 27 209 chr3 14061850 14061942 -213462636 + MIR SINE MIR 35 142 -120 2188 124 0 3 chr3 14061942 14062241 -213462337 - AluSc SINE Alu -11 298 1 293 202 27 209 chr3 14062241 14062261 -213462317 + MIR SINE MIR 142 164 -98 2515 90 0 0 chr3 14062261 14062573 -213462005 - AluSx SINE Alu 0 312 1 293 202 27 209 chr3 14062573 14062602 -213461976 + MIR SINE MIR 164 197 -65 1724 165 53 3 chr3 14062602 14062887 -213461691 + AluJo SINE Alu 1 299 -13 293 202 27 209 chr3 14062887 14063001 -213461577 + MIR SINE MIR 197 245 -17 708 238 48 29 chr3 14063532 14063738 -213460840 + MIR SINE MIR 2 211 -51 2322 97 24 0 chr3 14063983 14064281 -213460297 + AluSx SINE Alu 1 305 -7 1594 155 26 37 chr3 14064937 14065208 -213459370 - AluJb SINE Alu -21 291 24 577 234 48 30 chr3 14065222 14065389 -213459189 - L2 LINE L2 -9 3304 3135 2388 102 0 0 chr3 14065392 14065695 -213458883 + AluSx SINE Alu 1 303 -9 342 308 19 0 chr3 14065814 14065921 -213458657 + MIR SINE MIR 46 154 -108 217 275 125 0 chr3 14065929 14066009 -213458569 - MIR SINE MIR -4 258 169 403 259 122 27 chr3 14066057 14066204 -213458374 - MIR SINE MIR -96 166 6 413 238 165 61 chr3 14066994 14067158 -213457420 + MIR SINE MIR 22 202 -60 680 187 88 103 chr3 14067181 14067380 -213457198 + MIR SINE MIR 5 201 -61 2395 95 0 0 chr3 14067380 14067675 -213456903 - AluSx SINE Alu -17 295 1 680 187 88 103 chr3 14067675 14067737 -213456841 + MIR SINE MIR 201 262 0 236 287 25 82 chr3 14068218 14068340 -213456238 - MER5B DNA MER1_type -29 149 35 2265 93 3 0 chr3 14068343 14068633 -213455945 - AluY SINE Alu -20 291 1 411 272 72 21 chr3 14068714 14069281 -213455297 - L1MC4 LINE L1 -413 7629 7098 1962 84 95 7 chr3 14069318 14069603 -213454975 - AluSx SINE Alu -1 311 2 1959 141 10 13 chr3 14069613 14069919 -213454659 - AluSq SINE Alu -8 305 1 304 282 113 8 chr3 14070278 14070402 -213454176 - MIR SINE MIR -85 177 41 591 208 28 71 chr3 14070436 14070648 -213453930 + MER3 DNA MER1_type 2 204 -5 220 301 97 44 chr3 14070659 14070772 -213453806 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 14071580 14071609 -213452969 + (A)n Simple_repeat Simple_repeat 1 29 0 427 300 246 29 chr3 14072414 14072694 -213451884 + MER102b DNA MER1_type 1 341 0 406 303 86 0 chr3 14072720 14072882 -213451696 + MIR SINE MIR 31 206 -56 532 264 120 37 chr3 14073053 14073269 -213451309 - MIR SINE MIR -20 242 9 488 320 115 24 chr3 14074541 14074872 -213449706 + L3 LINE CR1 1145 1505 -72 2101 50 0 0 chr3 14074935 14075173 -213449405 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14075184 14075443 -213449135 + AluSq SINE Alu 35 300 -13 2661 44 0 0 chr3 14075443 14075739 -213448839 + AluY SINE Alu 1 296 -15 2471 83 3 10 chr3 14075847 14076159 -213448419 - AluSg SINE Alu 0 310 1 633 283 62 52 chr3 14076757 14076877 -213447701 - MER113 DNA MER1_type? -5 516 399 2557 93 0 0 chr3 14076877 14077189 -213447389 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 14077189 14077393 -213447185 - MER113 DNA MER1_type? -122 399 189 2207 116 0 0 chr3 14077393 14077685 -213446893 + AluSq SINE Alu 1 292 -21 463 304 120 14 chr3 14078099 14078316 -213446262 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 14078326 14078375 -213446203 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 14078375 14078672 -213445906 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 14078672 14078833 -213445745 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 14079129 14079154 -213445424 + AT_rich Low_complexity Low_complexity 1 25 0 2060 108 3 21 chr3 14079209 14079532 -213445046 - AluSx SINE Alu 0 318 1 199 139 13 177 chr3 14079608 14079687 -213444891 - MIR3 SINE MIR -133 75 10 * 237 223 11 106 chr3 14079671 14079698 -213444880 + L2 LINE L2 2976 3004 -268 2647 62 0 0 chr3 14079698 14080006 -213444572 - AluY SINE Alu -3 308 1 237 223 11 106 chr3 14080006 14080072 -213444506 + L2 LINE L2 3004 3060 -212 203 430 0 0 chr3 14080146 14080232 -213444346 + L2 LINE L2 3111 3196 -76 240 143 0 0 chr3 14080728 14080770 -213443808 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 224 30 30 0 chr3 14080798 14080831 -213443747 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 329 43 0 0 chr3 14080942 14080988 -213443590 + AluY SINE Alu 255 300 -1 2304 122 0 0 chr3 14081135 14081438 -213443140 - AluSg SINE Alu -7 303 1 2630 65 0 0 chr3 14081447 14081756 -213442822 - AluY SINE Alu -2 309 1 706 233 12 81 chr3 14082502 14082760 -213441818 - L1MA7 LINE L1 -159 6132 5893 432 274 0 0 chr3 14082758 14082871 -213441707 + L1MA7 LINE L1 6173 6285 -6 * 1054 267 44 0 chr3 14084053 14084394 -213440184 - L1M4b LINE L1 -5910 949 594 438 71 43 0 chr3 14084395 14084465 -213440113 + LTR5 LTR ERVK 1 73 -896 6839 82 11 2 chr3 14084465 14085313 -213439265 + LTR5 LTR ERVK 115 969 0 20502 69 2 4 chr3 14085313 14088009 -213436569 + HERVK LTR ERVK 1 2691 -4552 1218 199 8 13 chr3 14088043 14088279 -213436299 + AluJb SINE Alu 58 292 -20 312 93 0 0 chr3 14088280 14088323 -213436255 + L1MB7 LINE L1 5390 5432 -734 875 144 0 27 chr3 14088348 14088494 -213436084 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 14088531 14088834 -213435744 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 14088846 14088982 -213435596 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 14088982 14089287 -213435291 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 14089287 14089513 -213435065 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 14089523 14089775 -213434803 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 14089831 14089938 -213434640 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 14090911 14091210 -213433368 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 14091211 14091332 -213433246 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 14091332 14091651 -213432927 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 14091651 14091760 -213432818 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 14091912 14092077 -213432501 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 14092501 14092815 -213431763 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 14092820 14093122 -213431456 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 14093900 14094031 -213430547 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 14094427 14094724 -213429854 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 14094790 14095086 -213429492 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 14095108 14095421 -213429157 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 14096317 14096611 -213427967 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 14098267 14098350 -213426228 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 14099284 14099580 -213424998 + AluSx SINE Alu 1 311 -1 1094 69 0 0 chr3 14099582 14099712 -213424866 + AluY SINE Alu 3 132 -179 270 257 101 9 chr3 14100999 14101108 -213423470 - L2 LINE L2 -171 3142 3024 2325 122 6 0 chr3 14101119 14101472 -213423106 - THE1A LTR MaLR 0 355 1 2132 124 3 22 chr3 14102194 14102508 -213422070 + AluSx SINE Alu 1 308 -4 2304 122 0 0 chr3 14102648 14102951 -213421627 - AluSg SINE Alu -7 303 1 2641 62 0 0 chr3 14102960 14103269 -213421309 - AluY SINE Alu -2 309 1 1197 178 82 10 chr3 14103269 14103572 -213421006 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 14103576 14103620 -213420958 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 14103631 14103761 -213420817 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 14103899 14103941 -213420637 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2347 101 0 3 chr3 14103998 14104304 -213420274 - AluSg SINE Alu -3 307 3 2484 86 0 3 chr3 14104306 14104610 -213419968 - AluSc SINE Alu -6 303 1 1677 159 35 14 chr3 14104612 14104902 -213419676 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 14105065 14105088 -213419490 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 14105717 14105778 -213418800 + MER20 DNA MER1_type 3 65 -154 236 207 138 58 chr3 14105821 14105908 -213418670 + MER20 DNA MER1_type 57 150 -69 191 289 156 0 chr3 14106007 14106097 -213418481 - L2 LINE L2 -11 3261 3158 2508 79 0 0 chr3 14106240 14106543 -213418035 - AluY SINE Alu -8 303 1 267 252 176 15 chr3 14106576 14106707 -213417871 + L2 LINE L2 2872 3023 -249 703 177 8 0 chr3 14107059 14107183 -213417395 - FLAM_C SINE Alu -6 127 3 1666 168 14 50 chr3 14107193 14107419 -213417159 - L1MB7 LINE L1 -358 5826 5616 1730 180 3 26 chr3 14107419 14107724 -213416854 - AluJo SINE Alu -6 306 9 1666 168 14 50 chr3 14107724 14107860 -213416718 - L1MB7 LINE L1 -568 5616 5477 2232 116 3 3 chr3 14107872 14108175 -213416403 - AluSp SINE Alu -10 303 1 875 144 0 27 chr3 14108212 14108358 -213416220 - FLAM_C SINE Alu -1 142 1 939 154 46 36 chr3 14108383 14108427 -213416151 - L1MB7 LINE L1 -739 5435 5393 1913 174 0 3 chr3 14108427 14108720 -213415858 - AluJb SINE Alu -20 292 1 939 154 46 36 chr3 14108720 14108951 -213415627 - L1MB7 LINE L1 -781 5393 5162 2189 117 0 3 chr3 14108951 14109242 -213415336 + AluSx SINE Alu 1 290 -22 939 154 46 36 chr3 14109242 14109299 -213415279 - L1MB7 LINE L1 -1012 5162 5107 540 193 107 7 chr3 14109308 14109491 -213415087 - L1 LINE L1 -961 5185 4981 2423 52 3 43 chr3 14109575 14109880 -213414698 + AluY SINE Alu 1 293 -18 186 327 144 0 chr3 14109930 14110034 -213414544 + MIR SINE MIR 119 237 -25 1033 176 176 8 chr3 14110158 14110403 -213414175 + L1MC4 LINE L1 6725 7010 -1032 204 40 0 0 chr3 14110454 14110479 -213414099 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1711 165 18 18 chr3 14110479 14110764 -213413814 + AluJo SINE Alu 1 285 -27 1302 167 20 20 chr3 14110515 14110764 -213413814 + AluJo SINE Alu 37 314 0 262 0 0 0 chr3 14110764 14110793 -213413785 + (TAA)n Simple_repeat Simple_repeat 2 180 0 341 241 181 23 chr3 14110808 14110941 -213413637 + L1MC4 LINE L1 7247 7400 -642 1986 142 3 0 chr3 14110978 14111266 -213413312 - AluSx SINE Alu -23 289 1 598 206 0 30 chr3 14111662 14111793 -213412785 - FLAM_A SINE Alu -6 127 1 1851 149 3 0 chr3 14112571 14112873 -213411705 + AluSx SINE Alu 1 303 -9 2016 134 0 6 chr3 14112878 14113192 -213411386 + AluSx SINE Alu 1 312 0 366 271 143 15 chr3 14113616 14113781 -213410797 + MIR SINE MIR 10 189 -53 694 215 30 68 chr3 14113933 14114048 -213410530 + LTR37A LTR ERV1 139 242 -184 1262 192 48 86 chr3 14114048 14114361 -213410217 - AluJo SINE Alu -1 301 1 694 215 30 68 chr3 14114361 14114482 -213410096 + LTR37A LTR ERV1 242 366 -60 1962 137 10 0 chr3 14114483 14114782 -213409796 - AluSx SINE Alu -10 302 1 583 164 0 0 chr3 14115758 14115862 -213408716 - L1MB7 LINE L1 -19 6165 6062 1475 145 0 0 chr3 14115942 14116170 -213408408 - AluSc SINE Alu -81 228 1 1532 153 35 14 chr3 14116180 14116462 -213408116 - AluJb SINE Alu -24 288 1 186 43 0 0 chr3 14116625 14116648 -213407930 + (A)n Simple_repeat Simple_repeat 1 23 0 368 164 33 0 chr3 14117277 14117338 -213407240 + MER20 DNA MER1_type 3 65 -154 476 213 176 15 chr3 14117381 14117517 -213407061 + MER20 DNA MER1_type 57 214 -5 235 278 156 0 chr3 14117568 14117658 -213406920 - L2 LINE L2 -11 3261 3158 2374 78 0 0 chr3 14117799 14118105 -213406473 - AluY SINE Alu -5 306 1 2062 106 0 3 chr3 14118361 14118653 -213405925 - AluSx SINE Alu -21 291 1 2035 141 0 0 chr3 14118653 14118951 -213405627 - AluSx SINE Alu -14 298 1 325 275 42 49 chr3 14118962 14119104 -213405474 + L2 LINE L2 3171 3311 -2 1253 104 22 6 chr3 14119758 14119941 -213404637 + AluSg/x SINE Alu 115 300 -10 255 321 10 14 chr3 14119943 14120233 -213404345 + AluYa5 SINE Alu 3 291 -10 1410 214 146 71 chr3 14120950 14121596 -213402982 + L1MC5 LINE L1 6837 7530 -431 328 287 46 40 chr3 14121679 14121853 -213402725 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr3 14121857 14121964 -213402614 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr3 14121884 14121968 -213402610 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 508 202 0 25 chr3 14122579 14122698 -213401880 - FLAM_A SINE Alu -17 116 1 2080 138 0 0 chr3 14123467 14123779 -213400799 + AluSx SINE Alu 1 312 0 1961 111 27 10 chr3 14123812 14124109 -213400469 + AluSx SINE Alu 1 302 -10 330 284 149 14 chr3 14124544 14124692 -213399886 + MIR SINE MIR 22 189 -73 1280 180 103 4 chr3 14124792 14125064 -213399514 + AluJo SINE Alu 1 299 -13 2509 58 3 0 chr3 14125414 14125725 -213398853 + AluSx SINE Alu 1 312 0 1736 148 7 7 chr3 14125735 14126033 -213398545 + AluSx SINE Alu 1 298 -14 225 222 0 0 chr3 14126035 14126089 -213398489 - MER20B DNA MER1_type -726 57 4 1657 173 10 7 chr3 14126273 14126568 -213398010 - AluJb SINE Alu -7 305 10 1982 109 3 7 chr3 14126629 14126923 -213397655 + AluSg SINE Alu 1 293 -17 1996 107 3 17 chr3 14126935 14127233 -213397345 + AluSx SINE Alu 3 296 -16 808 165 0 0 chr3 14127449 14127570 -213397008 + AluJb SINE Alu 2 122 -190 207 0 0 0 chr3 14127570 14127593 -213396985 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 816 112 15 175 chr3 14127925 14128131 -213396447 - AluJb SINE Alu -10 302 130 490 88 0 15 chr3 14129089 14129179 -213395399 - Alu SINE Alu 0 310 222 815 108 8 8 chr3 14129179 14129308 -213395270 - AluSq/x SINE Alu -184 129 1 2156 102 3 3 chr3 14129623 14129926 -213394652 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 14129927 14129976 -213394602 + (TA)n Simple_repeat Simple_repeat 2 50 0 639 227 35 0 chr3 14129981 14130122 -213394456 + MER5A DNA MER1_type 5 150 -39 2012 104 31 0 chr3 14130786 14131073 -213393505 + AluSx SINE Alu 1 296 -16 2388 52 7 3 chr3 14131433 14131738 -213392840 - AluY SINE Alu -3 308 3 522 96 0 0 chr3 14131825 14131898 -213392680 + AluS SINE Alu 6 78 -235 626 183 0 40 chr3 14132974 14133100 -213391478 + FLAM_A SINE Alu 21 141 -1 2124 95 3 0 chr3 14133658 14133952 -213390626 - AluSg SINE Alu -9 301 7 2180 82 3 3 chr3 14133983 14134274 -213390304 - AluY SINE Alu -20 291 1 612 157 18 39 chr3 14134276 14134398 -213390180 - L1M4 LINE L1 -488 5663 5553 278 333 57 0 chr3 14134398 14134521 -213390057 - MIR3 SINE MIR -77 131 2 463 321 154 55 chr3 14134660 14134722 -213389856 + L2 LINE L2 2791 2846 -426 306 209 0 0 chr3 14134722 14134789 -213389789 - L1MB8 LINE L1 -9 6169 6103 463 321 154 55 chr3 14134789 14135075 -213389503 + L2 LINE L2 2846 3192 -80 1620 83 0 9 chr3 14135075 14135303 -213389275 - AluY SINE Alu -6 305 80 463 321 154 55 chr3 14135303 14135388 -213389190 + L2 LINE L2 3192 3267 -5 483 243 79 13 chr3 14135798 14135950 -213388628 + MLT1K LTR MaLR 419 580 -8 1307 107 122 0 chr3 14136143 14136348 -213388230 - MER30 DNA MER1_type 0 230 1 1682 79 0 0 chr3 14136622 14136837 -213387741 - AluSq SINE Alu -16 297 83 186 240 0 20 chr3 14137056 14137106 -213387472 + L2 LINE L2 2931 2979 -334 732 157 16 0 chr3 14137351 14137472 -213387106 + FLAM_C SINE Alu 1 123 -10 219 36 0 0 chr3 14138401 14138429 -213386149 + (TA)n Simple_repeat Simple_repeat 2 29 0 2101 101 0 14 chr3 14138429 14138726 -213385852 - AluSg1 SINE Alu -16 293 1 531 293 28 83 chr3 14139206 14139459 -213385119 - MIR SINE MIR -8 254 16 562 210 86 37 chr3 14139910 14140072 -213384506 + FRAM SINE Alu 4 173 -3 1498 156 0 50 chr3 14140083 14140366 -213384212 + AluJo SINE Alu 9 277 -35 486 0 0 0 chr3 14140367 14140421 -213384157 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2887 174 77 61 chr3 14140466 14141183 -213383395 - L1MB7 LINE L1 -17 6167 5440 2280 88 0 0 chr3 14141184 14141479 -213383099 - AluSg SINE Alu -15 295 1 1733 99 3 128 chr3 14141488 14141832 -213382746 - AluSg1 SINE Alu -8 301 1 1019 214 37 7 chr3 14141842 14142113 -213382465 - L1MB4 LINE L1 0 6180 5902 755 186 164 0 chr3 14142140 14142280 -213382298 - FRAM SINE Alu -19 157 1 4176 195 62 34 chr3 14142320 14142886 -213381692 - L1MB4 LINE L1 -1144 5002 4396 2148 106 0 0 chr3 14142886 14143178 -213381400 - AluSc SINE Alu -17 292 1 4176 195 62 34 chr3 14143178 14143602 -213380976 - L1MB4 LINE L1 -1750 4396 3985 1069 151 0 0 chr3 14143602 14143768 -213380810 - AluSg/x SINE Alu -11 299 134 2274 94 3 0 chr3 14143770 14144077 -213380501 - AluSp SINE Alu -5 308 1 2210 92 0 3 chr3 14144251 14144546 -213380032 - AluSc SINE Alu -15 294 1 22 35 0 0 chr3 14144587 14144616 -213379962 + AT_rich Low_complexity Low_complexity 1 29 0 438 251 131 0 chr3 14144675 14144866 -213379712 - L1ME LINE L1 -303 5818 5603 710 139 42 69 chr3 14144879 14144999 -213379579 + FLAM_C SINE Alu 2 124 -83 2138 108 7 0 chr3 14144999 14145294 -213379284 + AluSp SINE Alu 1 297 -16 2435 55 0 6 chr3 14145297 14145609 -213378969 + AluY SINE Alu 1 310 -1 710 139 42 69 chr3 14145609 14145694 -213378884 + FLAM_C SINE Alu 126 207 0 755 139 14 83 chr3 14145695 14145839 -213378739 + AluJo SINE Alu 2 135 -177 1985 122 20 3 chr3 14145841 14146144 -213378434 + AluSx SINE Alu 1 308 -4 780 135 23 23 chr3 14146211 14146344 -213378234 - FLAM_C SINE Alu 0 133 1 1549 132 115 65 chr3 14146611 14146736 -213377842 + THE1C LTR MaLR 1 118 -257 2300 93 0 0 chr3 14146736 14147038 -213377540 - AluSg1 SINE Alu -7 302 1 1549 132 115 65 chr3 14147038 14147268 -213377310 + THE1C LTR MaLR 118 374 -1 927 133 21 0 chr3 14147877 14148020 -213376558 - MER46B DNA MER2_type 0 236 91 1646 178 75 42 chr3 14148020 14148380 -213376198 - MER21A LTR ERV1 0 931 560 350 58 0 39 chr3 14148374 14148426 -213376152 - AluJo SINE Alu -8 294 245 * 813 212 41 0 chr3 14148428 14148598 -213375980 - AluJo SINE Alu -135 177 1 1038 137 71 18 chr3 14148598 14148839 -213375739 - MER21B LTR ERV1 -376 487 214 899 141 7 0 chr3 14148847 14148989 -213375589 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 14148989 14149051 -213375527 - MER21A LTR ERV1 -863 68 3 770 186 170 0 chr3 14149051 14149239 -213375339 - MER46B DNA MER2_type -141 95 1 2241 100 7 0 chr3 14149433 14149734 -213374844 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 14150122 14150145 -213374433 + (A)n Simple_repeat Simple_repeat 1 23 0 1786 126 75 10 chr3 14150288 14150445 -213374133 - AluSq SINE Alu -1 312 167 2131 91 0 10 chr3 14150445 14150752 -213373826 - AluY SINE Alu -6 305 2 1786 126 75 10 chr3 14150752 14150887 -213373691 - AluSq SINE Alu -146 167 1 2053 136 0 7 chr3 14151271 14151581 -213372997 - AluSx SINE Alu -4 308 1 751 237 6 17 chr3 14151605 14151782 -213372796 + MER5B DNA MER1_type 4 178 0 449 226 182 17 chr3 14151953 14152010 -213372568 + MIR SINE MIR 2 48 -214 2310 173 88 11 chr3 14152010 14152454 -213372124 - MER66A LTR ERV1 0 478 1 449 226 182 17 chr3 14152454 14152577 -213372001 + MIR SINE MIR 48 212 -50 430 304 22 77 chr3 14153396 14153669 -213370909 - MIR SINE MIR 0 262 5 290 294 125 22 chr3 14153696 14153832 -213370746 + MIR SINE MIR 61 210 -52 760 215 101 0 chr3 14153921 14154079 -213370499 + MIR SINE MIR 86 259 -3 350 115 16 0 chr3 14154080 14154141 -213370437 + (TA)n Simple_repeat Simple_repeat 1 62 0 1771 138 39 0 chr3 14154173 14154456 -213370122 - AluSx SINE Alu -18 294 1 2130 122 0 3 chr3 14154584 14154887 -213369691 - AluSx SINE Alu -10 302 1 2346 82 0 0 chr3 14155413 14155716 -213368862 - AluSx SINE Alu -9 303 1 2318 69 3 3 chr3 14155874 14156178 -213368400 + AluY SINE Alu 1 304 -7 1519 153 34 27 chr3 14156346 14156608 -213367970 - AluJo SINE Alu -48 264 1 240 197 115 0 chr3 14157166 14157227 -213367351 + L2 LINE L2 2792 2859 -455 185 290 129 32 chr3 14157328 14157452 -213367126 - L2 LINE L2 -554 2760 2625 2327 78 0 7 chr3 14158332 14158640 -213365938 - AluSx SINE Alu -6 306 1 182 33 67 0 chr3 14158641 14158671 -213365907 + T-rich Low_complexity Low_complexity 2 33 0 834 167 0 0 chr3 14158674 14158806 -213365772 + AluJb SINE Alu 157 288 -24 674 226 27 21 chr3 14158808 14158994 -213365584 + ORSL DNA AcHobo 89 275 0 788 153 0 0 chr3 14159026 14159144 -213365434 + FLAM_A SINE Alu 2 119 -14 259 214 36 0 chr3 14159174 14159230 -213365348 + AluJ/FLAM SINE Alu 26 83 -219 2078 117 0 7 chr3 14159363 14159662 -213364916 - AluSx SINE Alu -15 297 1 2227 103 0 0 chr3 14159860 14160162 -213364416 - AluSx SINE Alu -10 302 1 309 184 118 0 chr3 14160177 14160284 -213364294 - L1M LINE L1 -802 5344 5226 239 269 104 0 chr3 14160532 14160599 -213363979 + L2 LINE L2 3149 3222 -50 1570 203 7 7 chr3 14160698 14160999 -213363579 - AluJo SINE Alu -6 306 6 22 0 0 0 chr3 14161004 14161026 -213363552 + AT_rich Low_complexity Low_complexity 1 22 0 408 307 129 6 chr3 14161282 14161445 -213363133 + MIR3 SINE MIR 26 208 0 456 128 0 53 chr3 14161492 14161587 -213362991 - FLAM_A SINE Alu 0 143 54 928 115 0 0 chr3 14161616 14161746 -213362832 + FLAM_C SINE Alu 2 131 -2 1602 140 0 0 chr3 14161779 14162007 -213362571 + AluSg/x SINE Alu 85 312 0 2185 46 0 77 chr3 14162196 14162505 -213362073 + AluY SINE Alu 19 305 0 1435 184 4 16 chr3 14162855 14163105 -213361473 - AluJo SINE Alu -63 249 3 770 139 0 51 chr3 14163115 14163252 -213361326 - FLAM_C SINE Alu -2 131 2 2249 107 7 3 chr3 14163290 14163581 -213360997 - AluSx SINE Alu -20 292 1 370 103 0 0 chr3 14163818 14163876 -213360702 + Tigger2 DNA MER2_type 2430 2487 -231 420 94 62 0 chr3 14163876 14163973 -213360605 - AluSc SINE Alu 0 311 211 462 73 0 0 chr3 14163975 14164043 -213360535 + Alu SINE Alu 235 302 -9 2114 130 3 16 chr3 14164053 14164368 -213360210 + AluSx SINE Alu 1 311 -1 636 198 9 0 chr3 14164390 14164506 -213360072 - FLAM_A SINE Alu -16 117 1 2208 120 0 10 chr3 14164571 14164870 -213359708 - AluSq SINE Alu -17 296 1 415 216 23 89 chr3 14165108 14165367 -213359211 - AluSx SINE Alu -17 295 54 1898 90 22 109 chr3 14165629 14165950 -213358628 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr3 14166553 14166574 -213358004 + AT_rich Low_complexity Low_complexity 1 21 0 185 244 22 0 chr3 14166581 14166626 -213357952 - L2 LINE L2 0 3313 3268 1041 166 16 21 chr3 14166697 14166711 -213357867 + AluJb SINE Alu 120 133 -179 2419 101 7 0 chr3 14166711 14167019 -213357559 + AluSg SINE Alu 1 310 0 1041 166 16 21 chr3 14167019 14167197 -213357381 + AluJb SINE Alu 133 311 -1 2336 103 0 0 chr3 14167627 14167927 -213356651 + AluY SINE Alu 1 300 -11 1823 158 3 14 chr3 14167944 14168236 -213356342 + AluJo SINE Alu 8 296 -16 774 185 51 6 chr3 14168288 14168445 -213356133 - MIR SINE MIR -78 184 21 2168 113 10 3 chr3 14169480 14169772 -213354806 - AluSx SINE Alu -18 294 1 2470 91 0 0 chr3 14169839 14170146 -213354432 - AluSx SINE Alu -5 307 1 586 106 0 0 chr3 14170179 14170264 -213354314 - AluSg1 SINE Alu -204 105 21 440 281 134 6 chr3 14170295 14170459 -213354119 - MIR SINE MIR -59 203 19 793 212 115 12 chr3 14170863 14171203 -213353375 + MLT1J2 LTR MaLR 1 427 -19 402 292 15 8 chr3 14171249 14171379 -213353199 - MIR3 SINE MIR -7 201 71 254 320 40 24 chr3 14171730 14171855 -213352723 + MLT1K LTR MaLR 69 195 -393 2267 112 0 0 chr3 14172066 14172361 -213352217 - AluSx SINE Alu -17 295 1 1864 117 4 4 chr3 14172370 14172626 -213351952 - AluSg SINE Alu -17 293 38 208 233 50 17 chr3 14173734 14173794 -213350784 - MIR SINE MIR -96 166 105 1357 209 23 36 chr3 14173794 14173963 -213350615 - AluJo SINE Alu -9 303 138 189 0 0 0 chr3 14173963 14173984 -213350594 + (TG)n Simple_repeat Simple_repeat 2 22 0 1357 209 23 36 chr3 14173984 14174115 -213350463 - AluJo SINE Alu -174 138 7 758 148 31 0 chr3 14174123 14174251 -213350327 - FLAM_C SINE Alu 0 133 2 599 261 186 36 chr3 14174856 14175243 -213349335 + L2 LINE L2 2869 3313 0 273 313 125 10 chr3 14175256 14175352 -213349226 - MIR SINE MIR -135 127 21 207 0 0 0 chr3 14175371 14175394 -213349184 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2130 98 0 4 chr3 14175394 14175671 -213348907 - AluSx SINE Alu -32 280 5 201 263 105 13 chr3 14176193 14176269 -213348309 - MIR3 SINE MIR -17 191 109 2208 146 56 30 chr3 14176715 14177147 -213347431 + LTR8A LTR ERV1 1 443 -284 2136 32 4 4 chr3 14177148 14177395 -213347183 + AluY SINE Alu 64 310 -1 2189 96 13 20 chr3 14177618 14177921 -213346657 - AluSx SINE Alu -11 301 1 1375 142 40 36 chr3 14177930 14178155 -213346423 - AluJb SINE Alu -23 289 64 25 31 0 0 chr3 14178160 14178192 -213346386 + AT_rich Low_complexity Low_complexity 1 32 0 362 136 0 61 chr3 14178192 14178258 -213346320 - AluJb SINE Alu -220 82 21 2232 122 0 7 chr3 14178281 14178584 -213345994 - AluSx SINE Alu -11 301 1 189 0 0 0 chr3 14179072 14179093 -213345485 + (CAGGC)n Simple_repeat Simple_repeat 5 25 0 2049 154 0 0 chr3 14179158 14179457 -213345121 - AluSx SINE Alu -13 299 1 1820 173 29 0 chr3 14179644 14179986 -213344592 + MLT1A1 LTR MaLR 13 364 -1 256 234 0 0 chr3 14180021 14180085 -213344493 + Charlie5 DNA MER1_type 2430 2493 -119 8072 59 7 21 chr3 14180145 14181128 -213343450 - LTR5 LTR ERVK 0 969 1 18418 43 2 2 chr3 14181128 14183422 -213341156 - HERVK LTR ERVK 0 7243 4951 * 21084 62 2 3 chr3 14183400 14186118 -213338460 - HERVK LTR ERVK -4528 2715 1 6839 82 11 2 chr3 14186118 14186966 -213337612 - LTR5 LTR ERVK 0 969 115 438 71 43 0 chr3 14186966 14187036 -213337542 - LTR5 LTR ERVK -896 73 1 1054 267 44 0 chr3 14187037 14187378 -213337200 + L1M4b LINE L1 594 949 -5910 432 274 0 0 chr3 14188560 14188673 -213335905 - L1MA7 LINE L1 -6 6285 6173 * 706 233 12 81 chr3 14188671 14188929 -213335649 + L1MA7 LINE L1 5893 6132 -159 2630 65 0 0 chr3 14189675 14189984 -213334594 + AluY SINE Alu 1 309 -2 2304 122 0 0 chr3 14189993 14190296 -213334282 + AluSg SINE Alu 1 303 -7 2132 124 3 22 chr3 14190435 14190749 -213333829 - AluSx SINE Alu -4 308 1 236 261 161 28 chr3 14191412 14191471 -213333107 + L2 LINE L2 2939 2989 -324 2519 96 6 0 chr3 14191471 14191824 -213332754 + THE1A LTR MaLR 1 355 0 236 261 161 28 chr3 14191824 14191944 -213332634 + L2 LINE L2 2989 3142 -171 1141 61 0 0 chr3 14193231 14193363 -213331215 - AluY SINE Alu -179 132 1 1967 132 51 0 chr3 14193363 14193659 -213330919 - AluSx SINE Alu -1 311 1 200 265 36 48 chr3 14194593 14194676 -213329902 + L2 LINE L2 3024 3105 -208 2569 54 0 0 chr3 14196332 14196626 -213327952 + AluY SINE Alu 1 294 -17 2266 115 0 10 chr3 14197522 14197835 -213326743 - AluSg SINE Alu 0 310 1 1888 132 24 17 chr3 14197857 14198153 -213326425 - AluJo SINE Alu -14 298 1 2190 124 3 0 chr3 14198219 14198518 -213326060 - AluSx SINE Alu -12 300 1 571 206 0 30 chr3 14198914 14199045 -213325533 - FLAM_A SINE Alu -6 127 1 2009 149 3 0 chr3 14199823 14200125 -213324453 + AluSx SINE Alu 1 303 -9 2179 134 0 6 chr3 14200130 14200444 -213324134 + AluSx SINE Alu 1 312 0 340 271 143 15 chr3 14200868 14201033 -213323545 + MIR SINE MIR 10 189 -53 682 221 30 43 chr3 14201185 14201294 -213323284 + LTR37A LTR ERV1 139 248 -178 1295 191 47 85 chr3 14201294 14201613 -213322965 - AluJo SINE Alu -5 307 1 682 221 30 43 chr3 14201613 14201734 -213322844 + LTR37A LTR ERV1 248 366 -60 2118 137 10 0 chr3 14201735 14202034 -213322544 - AluSx SINE Alu -10 302 1 581 159 0 0 chr3 14203007 14203114 -213321464 - L1MB7 LINE L1 -16 6168 6062 1476 186 4 8 chr3 14203170 14203422 -213321156 - AluJo SINE Alu -59 253 3 1666 168 14 50 chr3 14203432 14203658 -213320920 - L1MB7 LINE L1 -358 5826 5616 1730 180 3 26 chr3 14203658 14203963 -213320615 - AluJo SINE Alu -6 306 9 1666 168 14 50 chr3 14203963 14204099 -213320479 - L1MB7 LINE L1 -568 5616 5477 2232 116 3 3 chr3 14204111 14204414 -213320164 - AluSp SINE Alu -10 303 1 875 144 0 27 chr3 14204451 14204597 -213319981 - FLAM_C SINE Alu -1 142 1 939 154 46 36 chr3 14204622 14204666 -213319912 - L1MB7 LINE L1 -739 5435 5393 1913 174 0 3 chr3 14204666 14204959 -213319619 - AluJb SINE Alu -20 292 1 939 154 46 36 chr3 14204959 14205190 -213319388 - L1MB7 LINE L1 -781 5393 5162 2189 117 0 3 chr3 14205190 14205481 -213319097 + AluSx SINE Alu 1 290 -22 939 154 46 36 chr3 14205481 14205538 -213319040 - L1MB7 LINE L1 -1012 5162 5107 540 193 107 7 chr3 14205547 14205730 -213318848 - L1 LINE L1 -961 5185 4981 2423 52 3 43 chr3 14205814 14206119 -213318459 + AluY SINE Alu 1 293 -18 186 327 144 0 chr3 14206169 14206273 -213318305 + MIR SINE MIR 119 237 -25 1663 211 308 39 chr3 14206397 14206693 -213317885 + L1MC4 LINE L1 6725 6940 -1102 204 40 0 0 chr3 14206693 14206718 -213317860 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1712 165 18 18 chr3 14206718 14207032 -213317546 + AluJo SINE Alu 1 314 0 1663 211 308 39 chr3 14207032 14207217 -213317361 + L1MC4 LINE L1 6940 7074 -968 2031 144 0 7 chr3 14207217 14207508 -213317070 - AluJo SINE Alu -23 289 1 1663 211 308 39 chr3 14207508 14207569 -213317009 + L1MC4 LINE L1 7074 7117 -925 2484 80 0 6 chr3 14207569 14207881 -213316697 + AluY SINE Alu 1 310 -1 1663 211 308 39 chr3 14207881 14208259 -213316319 + L1MC4 LINE L1 7117 7898 -144 2022 146 0 0 chr3 14208668 14208949 -213315629 + AluSx SINE Alu 1 281 -31 2338 110 3 7 chr3 14208951 14209261 -213315317 + AluSx SINE Alu 1 309 -3 1908 141 16 19 chr3 14209855 14210168 -213314410 + AluSx SINE Alu 1 312 0 421 259 184 14 chr3 14210179 14210326 -213314252 - MER5A DNA MER1_type 0 189 18 450 326 67 5 chr3 14210494 14210687 -213313891 + MIR SINE MIR 20 224 -38 458 223 192 8 chr3 14210722 14210852 -213313726 + MER5A DNA MER1_type 30 183 -6 774 210 0 89 chr3 14211515 14211638 -213312940 + MER3 DNA MER1_type 7 105 -104 2124 85 22 63 chr3 14211638 14211954 -213312624 - AluSq SINE Alu -9 304 2 774 210 0 89 chr3 14211954 14212044 -213312534 + MER3 DNA MER1_type 105 201 -8 275 82 0 7 chr3 14212544 14212591 -213311987 + AluYa8 SINE Alu 156 194 -106 419 277 55 21 chr3 14212931 14213114 -213311464 + MIR SINE MIR 16 207 -55 790 155 0 0 chr3 14213114 14213243 -213311335 + FLAM_C SINE Alu 5 133 0 2397 105 0 0 chr3 14213274 14213578 -213311000 + AluSx SINE Alu 3 306 -6 2347 101 0 3 chr3 14213580 14213886 -213310692 + AluSg SINE Alu 3 307 -3 205 71 24 48 chr3 14213943 14213985 -213310593 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 623 200 0 23 chr3 14214123 14214253 -213310325 + FLAM_A SINE Alu 16 142 0 228 182 0 0 chr3 14214264 14214308 -213310270 + (TA)n Simple_repeat Simple_repeat 1 44 0 1621 164 64 39 chr3 14214312 14214615 -213309963 + L1MB8 LINE L1 5643 5960 -218 2724 39 0 3 chr3 14214615 14214927 -213309651 + AluY SINE Alu 1 311 0 1621 164 64 39 chr3 14214927 14215013 -213309565 + L1MB8 LINE L1 5960 6042 -136 2473 84 0 0 chr3 14215018 14215329 -213309249 - AluY SINE Alu 0 311 1 2602 64 0 3 chr3 14215334 14215645 -213308933 - AluY SINE Alu -1 310 1 699 92 0 23 chr3 14215655 14215807 -213308771 - AluSg/x SINE Alu 0 309 118 1815 68 0 9 chr3 14215808 14216030 -213308548 - AluSq SINE Alu -93 220 1 183 80 0 0 chr3 14216033 14216058 -213308520 + (T)n Simple_repeat Simple_repeat 1 25 0 497 89 129 20 chr3 14216082 14216183 -213308395 + L1MB7 LINE L1 6073 6184 0 823 193 27 16 chr3 14216211 14216398 -213308180 - MER5A DNA MER1_type 0 189 1 396 293 114 0 chr3 14216406 14216573 -213308005 + MIR SINE MIR 77 262 0 708 247 163 45 chr3 14216619 14216975 -213307603 - L2 LINE L2 0 3313 2916 957 97 0 0 chr3 14217362 14217486 -213307092 - FLAM_C SINE Alu -1 142 19 275 307 91 0 chr3 14217500 14217588 -213306990 - L2 LINE L2 -38 3234 3139 181 237 0 0 chr3 14217599 14217637 -213306941 + MER5B DNA MER1_type 4 41 -137 2460 66 7 10 chr3 14217866 14218171 -213306407 + AluY SINE Alu 3 306 -5 2404 81 0 7 chr3 14218176 14218474 -213306104 + AluSq SINE Alu 1 296 -17 1788 163 53 0 chr3 14218556 14218839 -213305739 + AluJo SINE Alu 5 302 -10 1950 154 6 10 chr3 14218839 14219151 -213305427 + AluJo SINE Alu 1 311 -1 322 233 68 0 chr3 14219152 14219225 -213305353 + Charlie4 DNA MER1_type 1884 1961 0 1887 159 25 0 chr3 14219277 14219560 -213305018 - AluJo SINE Alu -20 292 3 653 185 0 0 chr3 14219560 14219668 -213304910 - FLAM_A SINE Alu -34 108 1 252 272 68 68 chr3 14219673 14219820 -213304758 + MER5A DNA MER1_type 15 161 -28 252 352 40 8 chr3 14219721 14219846 -213304732 - MER5A DNA MER1_type -48 141 13 597 318 76 14 chr3 14220080 14220303 -213304275 + MIR SINE MIR 23 259 -3 2163 96 0 4 chr3 14220310 14220582 -213303996 - AluSg SINE Alu -39 271 1 2122 112 13 23 chr3 14220582 14220887 -213303691 - AluSx SINE Alu -10 302 1 784 305 146 32 chr3 14221031 14221158 -213303420 + L2 LINE L2 2565 2676 -596 1444 159 94 32 chr3 14221158 14221435 -213303143 - AluJo SINE Alu -14 298 5 784 305 146 32 chr3 14221435 14221933 -213302645 + L2 LINE L2 2676 3260 -12 1263 134 9 22 chr3 14221992 14222223 -213302355 - L1MB3 LINE L1 -4 6179 5952 1041 239 46 0 chr3 14222247 14222527 -213302051 - L1MC4 LINE L1 -456 7586 7294 1994 104 11 25 chr3 14222534 14222812 -213301766 - AluSx SINE Alu -23 289 16 357 240 96 27 chr3 14223574 14223720 -213300858 + MIR SINE MIR 80 235 -27 200 315 112 11 chr3 14223847 14223936 -213300642 - L2 LINE L2 -2 3270 3173 36 0 0 0 chr3 14224058 14224094 -213300484 + AT_rich Low_complexity Low_complexity 1 36 0 2419 57 3 7 chr3 14224497 14224796 -213299782 - AluY SINE Alu -13 298 1 807 127 8 15 chr3 14224822 14224956 -213299622 - FLAM_C SINE Alu 0 133 1 242 309 149 52 chr3 14224970 14225372 -213299206 + L2 LINE L2 2818 3258 -14 2442 67 23 0 chr3 14227005 14227304 -213297274 - AluY SINE Alu -5 306 1 742 216 36 6 chr3 14227304 14227471 -213297107 - AluSg/x SINE Alu -5 307 136 207 299 11 11 chr3 14227492 14227579 -213296999 + L2 LINE L2 2302 2388 -926 1313 108 0 0 chr3 14228008 14228184 -213296394 - AluSg/x SINE Alu 0 312 137 2033 153 3 0 chr3 14228188 14228482 -213296096 - AluSx SINE Alu -17 295 1 1324 111 41 0 chr3 14229019 14229191 -213295387 + AluSq SINE Alu 1 179 -134 973 105 0 0 chr3 14229402 14229526 -213295052 + AluSg/x SINE Alu 172 295 -17 261 0 0 0 chr3 14229693 14229722 -213294856 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 426 141 0 0 chr3 14229723 14229787 -213294791 - AluSx SINE Alu -36 274 211 1121 85 35 0 chr3 14229788 14229929 -213294649 - AluSx SINE Alu -167 146 1 226 250 223 0 chr3 14230007 14230119 -213294459 + MIR SINE MIR 113 249 -13 203 152 0 0 chr3 14231188 14231221 -213293357 + (TG)n Simple_repeat Simple_repeat 1 33 0 328 306 113 0 chr3 14231560 14231720 -213292858 + MIR SINE MIR 78 255 -7 816 191 0 0 chr3 14231930 14232103 -213292475 + CT-rich Low_complexity Low_complexity 4 176 0 2543 63 0 0 chr3 14232294 14232593 -213291985 + AluY SINE Alu 1 299 -12 1192 192 161 4 chr3 14232602 14232862 -213291716 + AluJo SINE Alu 1 301 -1 2133 141 7 0 chr3 14233121 14233419 -213291159 + AluSx SINE Alu 3 302 -10 2258 109 3 10 chr3 14233419 14233722 -213290856 + AluSx SINE Alu 1 302 -10 236 240 67 67 chr3 14233778 14233882 -213290696 + MIR SINE MIR 86 189 -73 2333 102 7 0 chr3 14234194 14234499 -213290079 + AluSg SINE Alu 1 307 -3 226 283 58 50 chr3 14236010 14236130 -213288448 + MIR SINE MIR 7 127 -135 309 305 21 0 chr3 14236369 14236464 -213288114 - MIR SINE MIR -118 144 48 2257 98 0 7 chr3 14237000 14237296 -213287282 + AluSq SINE Alu 1 294 -19 2131 151 0 3 chr3 14237309 14237621 -213286957 + AluJo SINE Alu 1 311 -1 1967 157 0 0 chr3 14237672 14237952 -213286626 + AluJb SINE Alu 1 280 -32 447 100 0 0 chr3 14237952 14238022 -213286556 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 2295 101 0 0 chr3 14238042 14238339 -213286239 + AluY SINE Alu 6 302 -9 2350 83 3 3 chr3 14238479 14238779 -213285799 + AluSp SINE Alu 14 313 0 215 313 111 63 chr3 14239020 14239178 -213285400 - MIR SINE MIR -70 192 29 288 200 17 0 chr3 14239655 14239715 -213284863 - MIR SINE MIR -60 148 88 683 193 0 0 chr3 14239759 14239905 -213284673 + FLAM_C SINE Alu 6 151 0 245 299 75 54 chr3 14240362 14240509 -213284069 + MIR SINE MIR 99 248 -14 225 94 0 0 chr3 14241841 14241873 -213282705 + (CA)n Simple_repeat Simple_repeat 2 33 0 239 301 125 7 chr3 14242103 14242239 -213282339 + MIR SINE MIR 108 259 -3 263 293 19 19 chr3 14242380 14242486 -213282092 - L2 LINE L2 -220 3052 2947 2260 134 0 3 chr3 14242582 14242889 -213281689 + AluSx SINE Alu 1 306 -6 2054 124 29 33 chr3 14242902 14243209 -213281369 + AluSg SINE Alu 1 306 -4 811 42 0 0 chr3 14244289 14244384 -213280194 - AluY SINE Alu -1 310 216 1925 139 20 41 chr3 14244476 14244820 -213279758 + MER1B DNA MER1_type 1 337 0 693 199 88 0 chr3 14245240 14245376 -213279202 + FRAM SINE Alu 8 155 -21 260 294 16 114 chr3 14245538 14245621 -213278957 - MIR SINE MIR -56 206 149 2241 114 3 7 chr3 14245621 14245962 -213278616 + AluSx SINE Alu 1 312 0 260 294 16 114 chr3 14245962 14246062 -213278516 - MIR SINE MIR -113 149 41 802 285 76 3 chr3 14246596 14246884 -213277694 + MER102b DNA MER1_type 33 341 0 399 273 107 0 chr3 14247449 14247599 -213276979 + MER91A DNA MER1_type 20 185 -11 214 193 18 18 chr3 14248007 14248064 -213276514 + (CCCCG)n Simple_repeat Simple_repeat 5 61 0 390 231 46 9 chr3 14251191 14251299 -213273279 - MIR SINE MIR -3 259 148 299 208 28 14 chr3 14251318 14251390 -213273188 + MIR SINE MIR 92 164 -98 683 209 52 119 chr3 14251390 14251550 -213273028 - L1ME LINE L1 -553 5609 5483 599 179 0 0 chr3 14251550 14251656 -213272922 - U6 snRNA snRNA 0 107 2 683 209 52 119 chr3 14251656 14251839 -213272739 - L1ME LINE L1 -679 5483 5289 2445 68 0 7 chr3 14251861 14252156 -213272422 + AluY SINE Alu 1 293 -18 353 260 39 10 chr3 14252156 14252260 -213272318 + MIR SINE MIR 153 259 -3 325 244 74 25 chr3 14252223 14252344 -213272234 - MIR SINE MIR -34 228 103 * 228 67 0 0 chr3 14253581 14253611 -213270967 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1909 169 0 0 chr3 14253666 14253980 -213270598 + AluJb SINE Alu 1 314 0 2598 59 0 3 chr3 14254113 14254417 -213270161 - AluY SINE Alu -8 303 1 2366 99 7 0 chr3 14254442 14254744 -213269834 - AluSg SINE Alu -6 304 1 259 211 0 0 chr3 14254749 14254801 -213269777 - L1ME3 LINE L1 -65 6097 6046 670 272 154 59 chr3 14254996 14255386 -213269192 - L2 LINE L2 0 3313 2887 2524 58 0 7 chr3 14255387 14255695 -213268883 + AluY SINE Alu 1 306 -5 2168 113 10 3 chr3 14255762 14256054 -213268524 + AluSx SINE Alu 1 294 -18 774 185 51 6 chr3 14257090 14257247 -213267331 + MIR SINE MIR 21 184 -78 1823 158 3 14 chr3 14257299 14257591 -213266987 - AluJo SINE Alu -16 296 8 2336 103 0 0 chr3 14257608 14257908 -213266670 - AluY SINE Alu -11 300 1 1041 166 16 21 chr3 14258338 14258516 -213266062 - AluJb SINE Alu -1 311 133 2410 101 7 0 chr3 14258516 14258823 -213265755 - AluSg SINE Alu -1 309 1 1041 166 16 21 chr3 14258823 14258837 -213265741 - AluJb SINE Alu -179 133 120 185 244 22 0 chr3 14258908 14258953 -213265625 + L2 LINE L2 3268 3313 0 21 0 0 0 chr3 14258960 14258981 -213265597 + AT_rich Low_complexity Low_complexity 1 21 0 2467 91 3 0 chr3 14259103 14259411 -213265167 - AluSc SINE Alu 0 309 1 248 257 0 43 chr3 14259539 14259609 -213264969 + L2 LINE L2 3206 3272 0 299 271 0 0 chr3 14259613 14259683 -213264895 + L2 LINE L2 3203 3272 0 304 268 0 0 chr3 14259686 14259757 -213264821 + L2 LINE L2 3201 3271 -1 2337 116 0 0 chr3 14259770 14260071 -213264507 + AluSg SINE Alu 3 303 -7 196 286 0 32 chr3 14260086 14260149 -213264429 + L2 LINE L2 3205 3265 -7 2265 109 0 26 chr3 14260149 14260453 -213264125 + AluSx SINE Alu 1 296 -16 562 222 49 69 chr3 14261247 14261450 -213263128 + MIR SINE MIR 64 262 0 2342 64 0 58 chr3 14261532 14261845 -213262733 + AluY SINE Alu 1 295 -16 476 242 202 40 chr3 14261845 14262093 -213262485 - L2 LINE L2 -1 3312 3025 2350 90 0 3 chr3 14263982 14264282 -213260296 - AluSg1 SINE Alu -10 299 1 451 243 125 7 chr3 14264484 14264620 -213259958 - MIR SINE MIR -22 240 89 225 0 0 0 chr3 14264699 14264724 -213259854 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2251 71 0 14 chr3 14264727 14265007 -213259571 - AluY SINE Alu -35 276 1 448 307 39 20 chr3 14267120 14267273 -213257305 + MIR SINE MIR 8 163 -99 1549 271 175 17 chr3 14267520 14268425 -213256153 - L2 LINE L2 -68 3245 2196 362 196 0 72 chr3 14268603 14268700 -213255878 + MIR SINE MIR 103 192 -70 294 279 19 19 chr3 14268729 14268833 -213255745 + MIR3 SINE MIR 83 186 -22 224 218 55 0 chr3 14268865 14268920 -213255658 - L2 LINE L2 -29 3243 3186 330 237 0 41 chr3 14268939 14269050 -213255528 + L1MC4 LINE L1 1996 6983 -1339 3166 156 70 15 chr3 14269054 14269709 -213254869 - L1MB5 LINE L1 -9 6165 5475 397 208 140 56 chr3 14269751 14269929 -213254649 - MIR SINE MIR -61 201 9 252 248 106 44 chr3 14270270 14270383 -213254195 + MIR3 SINE MIR 54 173 -35 327 250 0 12 chr3 14270629 14270713 -213253865 + MIR SINE MIR 44 126 -82 2453 74 0 3 chr3 14271059 14271358 -213253220 + AluY SINE Alu 1 298 -13 1412 148 92 8 chr3 14271367 14271617 -213252961 + AluJo SINE Alu 10 280 -32 423 0 0 0 chr3 14271622 14271669 -213252909 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 348 271 75 28 chr3 14271679 14271786 -213252792 + L1ME4a LINE L1 5738 5849 -272 11860 45 6 11 chr3 14271813 14273206 -213251372 - SVA Other Other 0 1386 1 298 98 16 33 chr3 14273207 14273268 -213251310 + (GGGAGA)n Simple_repeat Simple_repeat 1 60 0 203 430 0 0 chr3 14273764 14273850 -213250728 - L2 LINE L2 -76 3196 3111 237 223 11 106 chr3 14273924 14273990 -213250588 - L2 LINE L2 -212 3060 3004 2653 62 0 0 chr3 14273990 14274298 -213250280 + AluY SINE Alu 1 308 -3 237 223 11 106 chr3 14274298 14274325 -213250253 - L2 LINE L2 -268 3004 2976 199 139 13 177 chr3 14274309 14274388 -213250190 + MIR3 SINE MIR 10 75 -133 * 775 224 30 145 chr3 14274388 14274464 -213250114 - MLT1J LTR MaLR 0 495 412 2264 105 0 20 chr3 14274464 14274770 -213249808 + AluSq SINE Alu 1 300 -13 775 224 30 145 chr3 14274770 14275197 -213249381 - MLT1J LTR MaLR -83 412 1 705 327 9 0 chr3 14276345 14276556 -213248022 - MIR SINE MIR -12 250 38 312 229 46 76 chr3 14276586 14276717 -213247861 + MIR SINE MIR 64 190 -72 335 329 79 6 chr3 14277707 14277871 -213246707 + MIR SINE MIR 87 262 0 2199 74 19 32 chr3 14278303 14278615 -213245963 - AluSg SINE Alu -2 308 1 371 256 234 0 chr3 14280553 14280690 -213243888 + MIR SINE MIR 94 262 0 185 256 0 0 chr3 14280723 14280766 -213243812 + MER5B DNA MER1_type 1 43 -135 1055 163 28 0 chr3 14280809 14280987 -213243591 - AluJb SINE Alu -10 302 120 254 280 47 19 chr3 14282759 14282866 -213241712 + L2 LINE L2 2697 2806 -508 2321 110 0 0 chr3 14282992 14283282 -213241296 - AluSx SINE Alu -22 290 1 394 234 140 9 chr3 14283363 14283470 -213241108 + MIR SINE MIR 46 166 -96 321 213 32 32 chr3 14284246 14284340 -213240238 - MIR SINE MIR -119 143 50 243 61 0 0 chr3 14284623 14284656 -213239922 + (TCC)n Simple_repeat Simple_repeat 2 34 0 401 236 0 0 chr3 14285042 14285131 -213239447 - L3 LINE CR1 -66 1511 1423 331 257 81 62 chr3 14285165 14285248 -213239330 - L1MC4a LINE L1 -124 5997 5917 2135 69 87 0 chr3 14285248 14285523 -213239055 - AluSx SINE Alu -13 299 1 331 257 81 62 chr3 14285523 14285711 -213238867 - L1MC4a LINE L1 -204 5917 5719 1298 169 31 63 chr3 14285968 14286222 -213238356 + AluJb SINE Alu 1 246 -66 310 86 69 0 chr3 14286289 14286372 -213238206 + AluJb SINE Alu 241 327 0 1721 149 3 57 chr3 14286388 14286704 -213237874 + AluJo SINE Alu 13 311 -1 692 295 189 19 chr3 14286918 14287400 -213237178 - L3 LINE CR1 -291 1286 723 460 287 174 0 chr3 14288029 14288224 -213236354 - MIR SINE MIR -14 248 20 1031 114 0 0 chr3 14288245 14288377 -213236201 - AluSq/x SINE Alu -180 132 1 2231 124 0 0 chr3 14288923 14289222 -213235356 - AluSx SINE Alu -13 299 1 586 249 147 62 chr3 14289272 14289694 -213234884 - HAL1 LINE L1 -72 2435 1978 565 284 43 34 chr3 14289758 14290110 -213234468 + L1MC5 LINE L1 7428 7782 -179 2420 91 0 0 chr3 14290172 14290469 -213234109 + AluSx SINE Alu 1 297 -15 1726 176 20 16 chr3 14290493 14290799 -213233779 - AluJb SINE Alu -5 307 1 1860 160 14 10 chr3 14290801 14291095 -213233483 - AluJo SINE Alu -17 295 1 708 156 117 7 chr3 14291095 14291249 -213233329 - L1MB8 LINE L1 -347 5831 5661 1077 117 0 60 chr3 14291251 14291487 -213233091 - AluSc SINE Alu 0 309 1 2459 90 0 0 chr3 14291497 14291797 -213232781 - AluSg SINE Alu -10 300 1 600 136 18 36 chr3 14291799 14291909 -213232669 - L1MB8 LINE L1 -509 5669 5562 280 333 54 0 chr3 14291915 14292044 -213232534 - MIR3 SINE MIR -71 137 2 303 232 0 12 chr3 14292245 14292327 -213232251 - L1MB8 LINE L1 -9 6169 6089 386 358 43 47 chr3 14292341 14292595 -213231983 + L2 LINE L2 2876 3128 -144 1741 83 0 9 chr3 14292598 14292826 -213231752 - AluY SINE Alu -6 305 80 465 260 80 0 chr3 14293323 14293473 -213231105 + MLT1K LTR MaLR 419 580 -8 1237 107 122 0 chr3 14293666 14293871 -213230707 - MER30 DNA MER1_type 0 230 1 1794 79 0 0 chr3 14294145 14294360 -213230218 - AluSq SINE Alu -16 297 83 843 150 0 0 chr3 14294874 14295007 -213229571 + AluJo SINE Alu 1 133 -169 255 31 0 0 chr3 14295930 14295962 -213228616 + (TA)n Simple_repeat Simple_repeat 2 33 0 2293 100 0 13 chr3 14295962 14296263 -213228315 - AluSg1 SINE Alu -12 297 1 493 293 28 83 chr3 14296743 14296996 -213227582 - MIR SINE MIR -8 254 16 532 254 67 6 chr3 14297444 14297609 -213226969 + AluJo SINE Alu 137 311 -1 1655 156 0 50 chr3 14297620 14297903 -213226675 + AluJo SINE Alu 9 277 -35 341 0 45 0 chr3 14297904 14297948 -213226630 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2726 179 74 59 chr3 14297993 14298710 -213225868 - L1MB7 LINE L1 -17 6167 5440 2439 88 0 0 chr3 14298711 14299006 -213225572 - AluSg SINE Alu -15 295 1 1893 99 3 128 chr3 14299015 14299359 -213225219 - AluSg1 SINE Alu -8 301 1 969 214 37 7 chr3 14299369 14299640 -213224938 - L1MB4 LINE L1 0 6180 5902 718 186 164 0 chr3 14299667 14299807 -213224771 - FRAM SINE Alu -19 157 1 4003 195 71 38 chr3 14299847 14300413 -213224165 - L1MB4 LINE L1 -1144 5002 4456 2302 106 0 0 chr3 14300413 14300705 -213223873 - AluSc SINE Alu -17 292 1 4003 195 71 38 chr3 14300705 14301129 -213223449 - L1MB4 LINE L1 -1690 4456 3974 2140 132 0 10 chr3 14301129 14301297 -213223281 - AluSx SINE Alu -11 301 136 2246 105 10 29 chr3 14301297 14301610 -213222968 - AluSq SINE Alu -6 307 1 2140 132 0 10 chr3 14301610 14301745 -213222833 - AluSx SINE Alu -176 136 1 4003 195 71 38 chr3 14301745 14301797 -213222781 - L1MB4 LINE L1 -2172 3974 3925 285 240 184 22 chr3 14302373 14302476 -213222102 + MIR SINE MIR 44 157 -94 548 278 57 44 chr3 14302524 14302751 -213221827 - MIR SINE MIR 0 262 33 2354 94 0 0 chr3 14303413 14303699 -213220879 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 14304948 14304970 -213219608 + (A)n Simple_repeat Simple_repeat 1 22 0 2088 115 20 10 chr3 14304974 14305270 -213219308 + AluSx SINE Alu 1 299 -13 2387 76 14 0 chr3 14305318 14305609 -213218969 - AluY SINE Alu -16 295 1 211 0 28 56 chr3 14305661 14305697 -213218881 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2355 68 0 0 chr3 14305699 14305979 -213218599 - AluY SINE Alu -31 280 1 611 137 0 0 chr3 14305981 14306076 -213218502 - AluJo/FLAM SINE Alu -183 129 35 2487 62 0 0 chr3 14307053 14307342 -213217236 - AluY SINE Alu -21 290 2 2425 98 0 13 chr3 14307343 14307650 -213216928 - AluSx SINE Alu -9 303 1 646 289 100 48 chr3 14307650 14308016 -213216562 - L1MC/D LINE L1 -1985 5823 5427 2446 92 0 0 chr3 14308016 14308322 -213216256 + AluY SINE Alu 1 306 -5 646 289 100 48 chr3 14308322 14308415 -213216163 - L1MC/D LINE L1 -2381 5427 5340 2101 135 6 13 chr3 14308582 14308894 -213215684 - AluSx SINE Alu -2 310 1 1691 150 6 72 chr3 14310514 14310834 -213213744 + AluJo SINE Alu 1 299 -13 2166 104 24 3 chr3 14311033 14311321 -213213257 + AluSg SINE Alu 1 293 -17 198 33 33 0 chr3 14311321 14311351 -213213227 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 383 167 83 93 chr3 14311650 14311758 -213212820 + MER5C DNA MER1_type 18 124 -200 475 115 0 73 chr3 14311788 14311884 -213212694 + MER5C DNA MER1_type 236 324 0 536 285 22 0 chr3 14311885 14312022 -213212556 + MIR SINE MIR 4 143 -119 299 326 129 85 chr3 14312029 14312477 -213212101 - L2 LINE L2 0 3272 2805 2132 120 0 0 chr3 14312498 14312797 -213211781 - AluSx SINE Alu -13 299 1 1746 148 0 69 chr3 14312852 14313170 -213211408 - AluJb SINE Alu -16 296 1 290 281 91 16 chr3 14313259 14313380 -213211198 + L2 LINE L2 3160 3289 -24 1493 125 9 133 chr3 14313395 14313740 -213210838 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 14314072 14314095 -213210483 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 808 165 0 0 chr3 14314095 14314216 -213210362 - AluJb SINE Alu -190 122 2 1996 107 3 17 chr3 14314432 14314730 -213209848 - AluSx SINE Alu -16 296 3 1982 109 3 7 chr3 14314742 14315036 -213209542 - AluSg SINE Alu -17 293 1 1657 173 10 7 chr3 14315097 14315392 -213209186 + AluJb SINE Alu 10 305 -7 225 222 0 0 chr3 14315576 14315630 -213208948 + MER20B DNA MER1_type 4 57 -726 1808 164 0 0 chr3 14315632 14315930 -213208648 - AluSx SINE Alu -14 298 1 1141 129 16 5 chr3 14315979 14316165 -213208413 + AluSg/x SINE Alu 105 292 -18 240 318 119 28 chr3 14316299 14316475 -213208103 + MIR SINE MIR 1 192 -70 2383 67 0 10 chr3 14316563 14316862 -213207716 - AluSc SINE Alu -13 296 1 2269 80 0 7 chr3 14316873 14317173 -213207405 - AluY SINE Alu -13 298 1 361 265 120 8 chr3 14317388 14317505 -213207073 + MIR SINE MIR 117 246 -16 1140 228 100 6 chr3 14317550 14317910 -213206668 + MER113 DNA MER1_type? 2 395 -126 460 139 163 0 chr3 14317915 14318001 -213206577 - FLAM_A SINE Alu -15 127 28 2038 99 7 0 chr3 14318096 14318412 -213206166 + AluSq SINE Alu 1 318 0 546 292 109 10 chr3 14318728 14318920 -213205658 - MIR SINE MIR -14 248 38 2248 69 7 3 chr3 14319418 14319724 -213204854 + AluY SINE Alu 3 309 -2 374 88 0 27 chr3 14321751 14321966 -213202612 + AluSx SINE Alu 1 292 -8 24 0 0 0 chr3 14322241 14322265 -213202313 + AT_rich Low_complexity Low_complexity 1 24 0 224 241 0 0 chr3 14322407 14322461 -213202117 + T-rich Low_complexity Low_complexity 1 54 0 256 105 53 0 chr3 14322461 14322499 -213202079 - LTR23 LTR ERV1 -78 359 320 2168 91 24 0 chr3 14322504 14322802 -213201776 - AluYb8 SINE Alu -13 305 1 1631 176 0 52 chr3 14322803 14322988 -213201590 - AluJo SINE Alu 0 312 119 180 0 0 0 chr3 14322988 14323008 -213201570 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 1852 112 18 14 chr3 14323008 14323294 -213201284 - AluSq SINE Alu -26 287 1 2311 46 7 0 chr3 14323300 14323609 -213200969 - AluY SINE Alu 0 311 1 1631 176 0 52 chr3 14323609 14323743 -213200835 - AluJo SINE Alu -197 115 1 809 153 21 7 chr3 14324016 14324160 -213200418 - FRAM SINE Alu -30 146 1 2080 133 42 21 chr3 14324241 14324571 -213200007 - MER1B DNA MER1_type 0 337 1 1804 131 0 55 chr3 14324578 14324907 -213199671 - AluSx SINE Alu -1 311 1 517 271 74 63 chr3 14325454 14325723 -213198855 - L3 LINE CR1 -682 895 624 198 355 32 21 chr3 14326362 14326455 -213198123 + MIR SINE MIR 32 125 -83 189 283 0 33 chr3 14326889 14326949 -213197629 + MIR3 SINE MIR 13 70 -138 2095 112 0 3 chr3 14327057 14327353 -213197225 - AluSq SINE Alu -18 295 1 1105 133 0 6 chr3 14328130 14328303 -213196275 - AluSg/x SINE Alu -24 288 117 227 191 85 0 chr3 14328417 14328464 -213196114 - L2 LINE L2 -1 3271 3221 1787 139 0 20 chr3 14328665 14328960 -213195618 + AluJb SINE Alu 23 311 -1 24 0 0 0 chr3 14329107 14329131 -213195447 + AT_rich Low_complexity Low_complexity 1 24 0 315 329 12 0 chr3 14329317 14329399 -213195179 - L1MC4a LINE L1 -1911 5897 5815 1501 161 38 3 chr3 14329413 14329704 -213194874 - L1MB4 LINE L1 -21 6159 5859 961 83 0 0 chr3 14329719 14329851 -213194727 - AluY SINE Alu -179 132 1 1923 180 40 59 chr3 14329851 14329929 -213194649 - L1MB4 LINE L1 -308 5872 5794 1979 113 0 0 chr3 14329929 14330241 -213194337 - AluSx SINE Alu 0 312 1 1923 180 40 59 chr3 14330241 14330564 -213194014 - L1MB4 LINE L1 -386 5794 5466 2239 71 0 0 chr3 14330564 14330888 -213193690 + AluY SINE Alu 1 324 0 1923 180 40 59 chr3 14330888 14330915 -213193663 - L1MB4 LINE L1 -714 5466 5440 928 171 0 6 chr3 14330915 14331073 -213193505 - FRAM SINE Alu -9 157 1 1923 180 40 59 chr3 14331073 14331232 -213193346 - L1MB4 LINE L1 -740 5440 5280 1423 229 0 3 chr3 14331232 14331537 -213193041 - AluJb SINE Alu -8 304 1 1923 180 40 59 chr3 14331537 14331718 -213192860 - L1MB4 LINE L1 -900 5280 5148 1990 133 3 0 chr3 14331718 14332018 -213192560 - AluSc SINE Alu -8 301 1 1923 180 40 59 chr3 14332018 14332061 -213192517 - L1MB4 LINE L1 -1032 5148 5106 2055 101 9 28 chr3 14332502 14332819 -213191759 - AluSx SINE Alu -1 311 1 2278 188 77 62 chr3 14333499 14333759 -213190819 - L1MB4 LINE L1 -1015 5131 4876 2246 64 0 55 chr3 14333759 14334071 -213190507 + AluY SINE Alu 1 295 -16 2278 188 77 62 chr3 14334071 14334195 -213190383 - L1MB4 LINE L1 -1270 4876 4755 2089 103 0 7 chr3 14334195 14334485 -213190093 + AluY SINE Alu 1 288 -23 2278 188 77 62 chr3 14334485 14334749 -213189829 - L1MB4 LINE L1 -1391 4755 4472 1597 188 11 0 chr3 14334750 14335065 -213189513 - AluJb SINE Alu 0 312 1 264 182 15 30 chr3 14335928 14335994 -213188584 + AluS SINE Alu 5 69 -234 1175 169 31 63 chr3 14336436 14336690 -213187888 + AluJb SINE Alu 1 246 -66 329 86 69 0 chr3 14336757 14336840 -213187738 + AluJb SINE Alu 241 327 0 1575 149 3 57 chr3 14336856 14337172 -213187406 + AluJo SINE Alu 13 311 -1 784 282 196 19 chr3 14337403 14337868 -213186710 - L3 LINE CR1 -308 1269 723 505 261 179 5 chr3 14338497 14338692 -213185886 - MIR SINE MIR -14 248 20 961 114 0 0 chr3 14338713 14338845 -213185733 - AluSq/x SINE Alu -181 132 1 2071 124 0 0 chr3 14339391 14339690 -213184888 - AluSx SINE Alu -13 299 1 637 230 152 66 chr3 14339740 14340162 -213184416 - HAL1 LINE L1 -72 2435 1978 555 276 45 37 chr3 14340226 14340578 -213184000 + L1MC5 LINE L1 7428 7782 -179 2261 91 0 0 chr3 14340640 14340937 -213183641 + AluSx SINE Alu 1 297 -15 1567 157 21 18 chr3 14340982 14341262 -213183316 - AluJb SINE Alu -26 286 6 1704 154 14 11 chr3 14341277 14341563 -213183015 - AluJo SINE Alu -25 287 1 747 156 117 7 chr3 14341563 14341717 -213182861 - L1MB8 LINE L1 -347 5831 5661 1001 110 0 61 chr3 14341719 14341952 -213182626 - AluSc SINE Alu 0 309 4 2074 108 3 13 chr3 14341965 14342270 -213182308 - AluSx SINE Alu -10 302 1 2132 113 0 0 chr3 14342280 14342580 -213181998 - AluSq SINE Alu -13 300 1 307 102 0 20 chr3 14342581 14342630 -213181948 - L1PB1 LINE L1 -178 5973 5926 2169 92 3 3 chr3 14342801 14343093 -213181485 + AluSx SINE Alu 1 292 -20 2226 75 0 0 chr3 14343403 14343727 -213180851 + AluY SINE Alu 1 324 0 928 171 0 6 chr3 14343754 14343912 -213180666 - FRAM SINE Alu -9 157 1 1111 157 48 56 chr3 14343916 14344071 -213180507 - L1MB8 LINE L1 -699 5481 5326 1423 229 0 3 chr3 14344071 14344376 -213180202 - AluJb SINE Alu -8 304 1 1111 157 48 56 chr3 14344376 14344557 -213180021 - L1MB8 LINE L1 -854 5326 5148 1990 133 3 0 chr3 14344557 14344857 -213179721 - AluSc SINE Alu -8 301 1 1111 157 48 56 chr3 14344857 14344900 -213179678 - L1MB8 LINE L1 -1032 5148 5106 2055 101 9 28 chr3 14345341 14345658 -213178920 - AluSx SINE Alu -1 311 1 2278 188 77 62 chr3 14346338 14346598 -213177980 - L1MB8 LINE L1 -1015 5131 4876 2246 64 0 55 chr3 14346598 14346910 -213177668 + AluY SINE Alu 1 295 -16 2278 188 77 62 chr3 14346910 14347034 -213177544 - L1MB8 LINE L1 -1270 4876 4755 2089 103 0 7 chr3 14347034 14347324 -213177254 + AluY SINE Alu 1 288 -23 2278 188 77 62 chr3 14347324 14347588 -213176990 - L1MB8 LINE L1 -1391 4755 4472 1597 188 11 0 chr3 14347589 14347904 -213176674 - AluJb SINE Alu 0 312 1 854 116 148 19 chr3 14348346 14348501 -213176077 + AluSg/x SINE Alu 119 293 -16 1858 154 0 10 chr3 14348509 14348807 -213175771 + AluSx SINE Alu 7 301 -11 1982 83 3 73 chr3 14348856 14349169 -213175409 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 14349448 14349756 -213174822 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 14349791 14349991 -213174587 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 14350033 14350325 -213174253 + AluJo SINE Alu 1 292 -20 817 289 174 60 chr3 14351547 14352432 -213172146 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 14352489 14352784 -213171794 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 14352784 14352830 -213171748 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 14352854 14353150 -213171428 + L1ME LINE L1 5374 5676 -488 2299 89 0 0 chr3 14353151 14353454 -213171124 + AluSx SINE Alu 1 303 -9 2130 122 0 3 chr3 14353981 14354284 -213170294 + AluSx SINE Alu 1 302 -10 2296 65 3 19 chr3 14354412 14354722 -213169856 + AluSp SINE Alu 1 305 -8 384 313 27 34 chr3 14355005 14355152 -213169426 - MIR SINE MIR -19 243 98 2039 104 0 38 chr3 14355194 14355512 -213169066 - AluSp SINE Alu -7 306 1 2228 74 0 17 chr3 14355688 14355987 -213168591 + AluSp SINE Alu 1 294 -19 1286 137 19 5 chr3 14356317 14356522 -213168056 - AluJb SINE Alu -11 301 94 331 273 244 13 chr3 14357241 14357549 -213167029 - L2 LINE L2 -9 3304 2926 2091 145 69 57 chr3 14358263 14358322 -213166256 + MER65A LTR ERV1 1 58 -387 1877 104 46 7 chr3 14358322 14358602 -213165976 + AluSx SINE Alu 1 291 -21 2091 145 69 57 chr3 14358602 14358949 -213165629 + MER65A LTR ERV1 58 412 -33 2279 99 0 3 chr3 14358950 14359263 -213165315 - AluSx SINE Alu 0 312 1 2414 56 3 0 chr3 14359269 14359575 -213165003 - AluY SINE Alu -4 307 1 1012 70 8 0 chr3 14359575 14359704 -213164874 - AluSq/x SINE Alu -182 130 1 25 0 0 0 chr3 14359705 14359730 -213164848 + AT_rich Low_complexity Low_complexity 1 25 0 1905 150 0 3 chr3 14359766 14360066 -213164512 - AluSx SINE Alu -13 299 1 2061 70 3 14 chr3 14360430 14360715 -213163863 + AluY SINE Alu 1 282 -29 1268 69 6 23 chr3 14360541 14360715 -213163863 + AluY SINE Alu 112 308 0 235 0 0 0 chr3 14360715 14360741 -213163837 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1191 287 76 12 chr3 14360911 14361343 -213163235 - MLT1J LTR MaLR -50 461 2 2493 39 19 26 chr3 14361718 14362025 -213162553 - AluY SINE Alu -6 305 1 965 168 38 32 chr3 14362082 14362267 -213162311 + MER5A DNA MER1_type 4 189 0 2492 75 3 3 chr3 14362270 14362577 -213162001 + AluSp SINE Alu 1 307 -6 2236 112 3 6 chr3 14362587 14362899 -213161679 + AluSx SINE Alu 1 311 -1 953 122 0 98 chr3 14362899 14363087 -213161491 + AluSg/x SINE Alu 132 303 0 1018 175 0 63 chr3 14363769 14363975 -213160603 - AluJo SINE Alu 0 312 120 823 148 65 13 chr3 14363975 14364130 -213160448 - MER46A DNA MER2_type -61 175 13 512 223 76 38 chr3 14364573 14364730 -213159848 - MER103 DNA DNA -3 163 1 2020 120 7 48 chr3 14365333 14365505 -213159073 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 14365505 14365536 -213159042 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2365 74 3 0 chr3 14365536 14365820 -213158758 - AluSp SINE Alu -28 285 1 2020 120 7 48 chr3 14365820 14365955 -213158623 - AluSx SINE Alu -192 120 1 596 310 101 39 chr3 14365962 14366415 -213158163 - L2 LINE L2 -17 3296 2737 204 365 56 24 chr3 14366928 14367054 -213157524 + MIR SINE MIR 23 152 -56 * 523 224 35 9 chr3 14367018 14367134 -213157444 - MIR SINE MIR -106 156 38 1235 140 0 0 chr3 14367263 14367441 -213157137 - AluSg/x SINE Alu 0 310 133 356 241 12 18 chr3 14367734 14367845 -213156733 - MLT1I LTR MaLR 0 409 318 2502 51 0 3 chr3 14368007 14368302 -213156276 + AluY SINE Alu 1 294 -17 589 250 36 30 chr3 14368441 14368727 -213155851 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 14368873 14368894 -213155684 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 14369018 14369081 -213155497 + (TG)n Simple_repeat Simple_repeat 1 65 0 1892 98 0 0 chr3 14369670 14369906 -213154672 + AluSx SINE Alu 40 275 -37 1887 147 0 60 chr3 14370316 14370635 -213153943 + AluJb SINE Alu 1 300 -12 1844 146 28 0 chr3 14372269 14372557 -213152021 + AluJo SINE Alu 1 296 -16 199 263 0 35 chr3 14372586 14372643 -213151935 - MIR SINE MIR -100 162 108 2349 103 0 3 chr3 14373105 14373407 -213151171 - AluSc SINE Alu -8 301 1 1930 168 26 8 chr3 14373410 14373791 -213150787 + L1MB4 LINE L1 5792 6179 -1 23 0 0 0 chr3 14374074 14374097 -213150481 + AT_rich Low_complexity Low_complexity 1 23 0 1780 125 4 7 chr3 14374155 14374434 -213150144 + AluY SINE Alu 1 278 -33 2402 60 0 3 chr3 14375058 14375341 -213149237 + AluY SINE Alu 22 303 -8 267 313 114 30 chr3 14375365 14375531 -213149047 + MIR SINE MIR 48 227 -35 2180 118 0 7 chr3 14375543 14375840 -213148738 - AluSg SINE Alu -15 295 1 2131 108 3 7 chr3 14376380 14376676 -213147902 - AluSc SINE Alu -14 295 1 2235 118 7 0 chr3 14376726 14377031 -213147547 - AluSx SINE Alu -5 307 1 1733 169 0 24 chr3 14377192 14377488 -213147090 + AluJo SINE Alu 17 305 -7 2880 3 0 0 chr3 14377677 14377980 -213146598 - AluYa5 SINE Alu -8 303 1 454 220 232 24 chr3 14378025 14378049 -213146529 - MLT1H LTR MaLR -29 520 502 2025 110 35 14 chr3 14378049 14378339 -213146239 - AluSx SINE Alu -16 296 1 454 220 232 24 chr3 14378339 14378467 -213146111 - MLT1H LTR MaLR -47 502 402 2019 157 3 3 chr3 14378467 14378779 -213145799 - AluJo SINE Alu 0 312 1 454 220 232 24 chr3 14378779 14378998 -213145580 - MLT1H LTR MaLR -147 402 20 204 314 157 33 chr3 14379740 14379861 -213144717 + L2 LINE L2 3136 3271 -1 1963 106 50 14 chr3 14380238 14380548 -213144030 - AluSq SINE Alu 0 313 1 481 259 113 8 chr3 14380802 14381041 -213143537 - L1ME4a LINE L1 -38 6083 5820 1765 176 20 7 chr3 14381154 14381449 -213143129 + AluJo SINE Alu 6 304 -8 2327 101 0 7 chr3 14381452 14381750 -213142828 + AluSx SINE Alu 1 296 -16 239 200 0 0 chr3 14381861 14381906 -213142672 - Alu SINE Alu -3 130 86 1185 106 0 0 chr3 14382358 14382450 -213142128 + (TGGG)n Simple_repeat Simple_repeat 1 272 0 1185 106 0 0 chr3 14382450 14382630 -213141948 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 291 196 65 33 chr3 14382879 14382971 -213141607 - MIR SINE MIR -108 154 60 2322 120 0 0 chr3 14382993 14383302 -213141276 - AluSx SINE Alu -3 309 1 433 181 81 128 chr3 14383670 14383819 -213140759 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 14383916 14383980 -213140598 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 14384044 14384142 -213140436 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 14384211 14384410 -213140168 - MER58C DNA MER1_type 0 215 1 1900 102 98 0 chr3 14385169 14385433 -213139145 + AluSx SINE Alu 1 290 -22 1567 147 105 11 chr3 14385530 14385796 -213138782 + AluJb SINE Alu 1 291 -21 2594 66 0 0 chr3 14385804 14386109 -213138469 + AluY SINE Alu 1 305 -6 1169 45 0 0 chr3 14386115 14386247 -213138331 - AluY SINE Alu -179 132 1 2287 94 10 0 chr3 14386618 14386915 -213137663 + AluSq SINE Alu 1 300 -13 2426 90 0 0 chr3 14387740 14388050 -213136528 + AluY SINE Alu 1 310 -1 1841 171 26 0 chr3 14388137 14388441 -213136137 - AluJo SINE Alu 0 312 1 710 328 26 9 chr3 14388448 14388680 -213135898 + MIR SINE MIR 26 261 -1 2473 103 0 0 chr3 14388906 14389218 -213135360 - AluSx SINE Alu 0 312 1 433 380 54 0 chr3 14389313 14389518 -213135060 + MIR SINE MIR 33 248 -14 337 318 59 6 chr3 14389818 14389988 -213134590 - L1M4 LINE L1 -1913 4233 4055 553 115 0 0 chr3 14390070 14390148 -213134430 - U6 snRNA snRNA -29 78 1 387 264 28 9 chr3 14390676 14390782 -213133796 - MIR SINE MIR -135 127 20 276 303 94 59 chr3 14391210 14391464 -213133114 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 14391565 14391608 -213132970 + (TG)n Simple_repeat Simple_repeat 2 44 0 782 186 0 0 chr3 14391675 14391799 -213132779 + FLAM_C SINE Alu 2 125 -18 25 83 0 0 chr3 14391885 14391945 -213132633 + AT_rich Low_complexity Low_complexity 1 60 0 2230 117 0 23 chr3 14391945 14392253 -213132325 - AluSx SINE Alu -11 301 1 1994 147 10 0 chr3 14392253 14392545 -213132033 - AluJb SINE Alu -17 295 1 764 164 16 23 chr3 14392563 14392691 -213131887 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 14392794 14392817 -213131761 + AT_rich Low_complexity Low_complexity 1 23 0 1505 162 36 56 chr3 14392827 14393130 -213131448 + AluJo SINE Alu 1 297 -15 2302 122 0 0 chr3 14393130 14393441 -213131137 + AluSx SINE Alu 1 312 0 1224 213 8 12 chr3 14393540 14393784 -213130794 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 14394272 14394290 -213130288 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 14394290 14394594 -213129984 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 14394594 14394746 -213129832 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 14394787 14394861 -213129717 - MIR SINE MIR -64 144 64 1510 109 41 0 chr3 14394943 14395164 -213129414 + MER30 DNA MER1_type 1 230 0 2398 80 0 10 chr3 14395265 14395566 -213129012 - AluY SINE Alu -13 298 1 2254 108 7 3 chr3 14395569 14395865 -213128713 - AluSp SINE Alu -16 297 1 690 175 50 8 chr3 14395865 14395985 -213128593 - AluJo/FLAM SINE Alu -186 126 2 405 251 131 0 chr3 14395998 14396189 -213128389 + L1ME LINE L1 5603 5818 -303 502 232 10 0 chr3 14396578 14396677 -213127901 + FLAM_A SINE Alu 1 100 -42 27 0 0 0 chr3 14396712 14396739 -213127839 + AT_rich Low_complexity Low_complexity 1 27 0 1645 156 0 50 chr3 14396750 14397033 -213127545 + AluJo SINE Alu 9 277 -35 414 0 0 0 chr3 14397034 14397080 -213127498 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2697 179 74 59 chr3 14397125 14397842 -213126736 - L1MB7 LINE L1 -17 6167 5440 2371 95 0 0 chr3 14397844 14398138 -213126440 - AluSg SINE Alu -16 294 1 564 96 0 36 chr3 14398162 14398245 -213126333 - AluSg/x SINE Alu -23 287 208 1855 118 8 0 chr3 14398245 14398491 -213126087 - AluSx SINE Alu -64 248 1 959 214 37 7 chr3 14398501 14398772 -213125806 - L1MB4 LINE L1 0 6180 5902 778 186 164 0 chr3 14398799 14398939 -213125639 - FRAM SINE Alu -19 157 1 4002 197 71 38 chr3 14398979 14399545 -213125033 - L1MB4 LINE L1 -1144 5002 4456 2292 106 0 0 chr3 14399545 14399837 -213124741 - AluSc SINE Alu -17 292 1 4002 197 71 38 chr3 14399837 14400261 -213124317 - L1MB4 LINE L1 -1690 4456 3974 2126 132 0 10 chr3 14400261 14400429 -213124149 - AluSx SINE Alu -11 301 136 2242 105 10 29 chr3 14400429 14400742 -213123836 - AluSq SINE Alu -6 307 1 2126 132 0 10 chr3 14400742 14400877 -213123701 - AluSx SINE Alu -176 136 1 4002 197 71 38 chr3 14400877 14400929 -213123649 - L1MB4 LINE L1 -2172 3974 3925 302 313 188 0 chr3 14401496 14401608 -213122970 + MIR SINE MIR 25 157 -105 587 278 57 44 chr3 14401656 14401883 -213122695 - MIR SINE MIR 0 262 33 2346 94 0 0 chr3 14402545 14402831 -213121747 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 14404080 14404102 -213120476 + (A)n Simple_repeat Simple_repeat 1 22 0 1406 150 5 0 chr3 14404106 14404319 -213120259 + AluSx SINE Alu 1 214 -98 2498 59 0 0 chr3 14404385 14404674 -213119904 + AluY SINE Alu 2 290 -21 648 137 0 0 chr3 14405651 14405746 -213118832 + AluJo/FLAM SINE Alu 35 129 -183 2336 68 0 0 chr3 14405748 14406066 -213118512 + AluY SINE Alu 1 318 0 2145 136 0 7 chr3 14406658 14406960 -213117618 - AluSx SINE Alu -12 300 1 2235 97 0 10 chr3 14407356 14407656 -213116922 - AluSx SINE Alu -14 298 2 900 128 15 0 chr3 14408131 14408264 -213116314 + AluSg/x SINE Alu 170 304 -6 497 172 90 46 chr3 14408297 14408449 -213116129 - MIR SINE MIR -51 211 43 2432 94 0 0 chr3 14408781 14409079 -213115499 + AluSq SINE Alu 1 298 -15 1424 160 86 26 chr3 14409220 14409488 -213115090 + AluJo SINE Alu 1 284 -28 1748 180 20 7 chr3 14409700 14409995 -213114583 + AluJo SINE Alu 6 304 -8 2029 129 7 3 chr3 14409998 14410301 -213114277 + AluSx SINE Alu 1 304 -8 1813 213 101 17 chr3 14410309 14410826 -213113752 + L1ME1 LINE L1 5480 6039 -127 640 76 0 0 chr3 14410839 14410918 -213113660 - AluSg/x SINE Alu -14 295 217 1458 154 0 51 chr3 14411090 14411402 -213113176 - AluY SINE Alu -1 300 5 1008 175 0 63 chr3 14413260 14413466 -213111112 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 14413466 14413633 -213110945 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 14414064 14414221 -213110357 - MER103 DNA DNA -3 163 1 2034 120 7 48 chr3 14414824 14414996 -213109582 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 14414996 14415027 -213109551 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 14415027 14415311 -213109267 - AluSp SINE Alu -28 285 1 2034 120 7 48 chr3 14415311 14415446 -213109132 - AluSx SINE Alu -192 120 1 540 301 112 45 chr3 14415448 14415804 -213108774 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 14416419 14416464 -213108114 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 14416509 14416625 -213107953 - MIR SINE MIR -106 156 38 1242 140 0 0 chr3 14416754 14416932 -213107646 - AluSg/x SINE Alu 0 310 133 362 241 12 18 chr3 14417225 14417336 -213107242 - MLT1I LTR MaLR 0 409 318 2518 51 0 3 chr3 14417498 14417793 -213106785 + AluY SINE Alu 1 294 -17 535 243 43 37 chr3 14417932 14418218 -213106360 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 14418364 14418385 -213106193 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 14418509 14418572 -213106006 + (TG)n Simple_repeat Simple_repeat 1 65 0 1901 98 0 0 chr3 14419161 14419397 -213105181 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 14419807 14420126 -213104452 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 14420575 14420733 -213103845 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 14421760 14422048 -213102530 + AluJo SINE Alu 1 296 -16 189 250 0 39 chr3 14422077 14422129 -213102449 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 14422596 14422900 -213101678 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 14423581 14423900 -213100678 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 14424056 14424352 -213100226 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 14424403 14424715 -213099863 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 14424963 14425121 -213099457 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 14425502 14425615 -213098963 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 14425840 14425927 -213098651 + MIR SINE MIR 84 185 -77 308 290 28 55 chr3 14426222 14426367 -213098211 - MIR3 SINE MIR -60 148 8 2491 89 0 0 chr3 14426371 14426674 -213097904 - AluSx SINE Alu -9 303 1 373 235 68 53 chr3 14426676 14426808 -213097770 - MIR SINE MIR -62 146 12 340 288 144 44 chr3 14427049 14427103 -213097475 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 14427103 14427401 -213097177 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 14427401 14427575 -213097003 + L1ME4a LINE L1 5722 5926 -195 1759 131 15 19 chr3 14427623 14427891 -213096687 - AluJb SINE Alu -45 267 1 248 219 0 2 chr3 14427950 14427999 -213096579 + MIR SINE MIR 43 90 -118 2030 140 7 3 chr3 14428237 14428529 -213096049 + AluSx SINE Alu 1 293 -19 435 215 19 166 chr3 14428577 14428745 -213095833 + L2 LINE L2 3087 3204 -109 1741 172 0 39 chr3 14428745 14429053 -213095525 - AluJb SINE Alu -16 296 1 435 215 19 166 chr3 14429053 14429149 -213095429 + L2 LINE L2 3204 3312 -1 375 291 64 7 chr3 14429158 14429299 -213095279 + Charlie8 DNA MER1_type 117 265 -2152 1781 132 68 32 chr3 14429590 14429871 -213094707 + AluSx SINE Alu 1 291 -21 983 120 0 120 chr3 14429908 14429926 -213094652 + AluSg/x SINE Alu 121 140 -165 2217 114 10 0 chr3 14429926 14430234 -213094344 + AluSx SINE Alu 1 311 -1 983 120 0 120 chr3 14430234 14430422 -213094156 + AluSg/x SINE Alu 140 305 0 1008 175 0 63 chr3 14431104 14431310 -213093268 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 14431310 14431477 -213093101 - MER46A DNA MER2_type -61 175 1 2324 102 7 0 chr3 14432206 14432499 -213092079 - AluSq SINE Alu -18 295 1 820 89 0 0 chr3 14432614 14432715 -213091863 - AluSg SINE Alu -209 101 1 799 263 31 24 chr3 14432764 14433019 -213091559 - MIR SINE MIR -4 258 2 306 216 142 68 chr3 14433032 14433194 -213091384 + L1ME4a LINE L1 5946 6119 -2 2066 142 0 10 chr3 14433276 14433586 -213090992 + AluSx SINE Alu 1 307 -5 230 265 41 61 chr3 14433633 14433731 -213090847 - MIR3 SINE MIR -3 205 110 2142 109 7 3 chr3 14434252 14434560 -213090018 - AluSx SINE Alu 0 309 1 999 167 29 17 chr3 14434667 14434841 -213089737 + AluJb SINE Alu 119 294 -18 2261 109 13 10 chr3 14434851 14435162 -213089416 - AluSx SINE Alu 0 312 1 813 155 0 16 chr3 14435212 14435341 -213089237 + AluJo/FLAM SINE Alu 6 132 -180 2502 74 0 6 chr3 14435343 14435654 -213088924 + AluY SINE Alu 1 309 -2 216 0 0 0 chr3 14435801 14435825 -213088753 + (T)n Simple_repeat Simple_repeat 1 24 0 1684 146 9 110 chr3 14436035 14436203 -213088375 - AluJo SINE Alu -11 301 118 222 37 0 0 chr3 14436203 14436230 -213088348 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 82 0 0 chr3 14436230 14436512 -213088066 - AluY SINE Alu -29 282 1 1684 146 9 110 chr3 14436512 14436543 -213088035 - AluJo SINE Alu -193 119 86 2517 61 3 0 chr3 14436543 14436836 -213087742 - AluY SINE Alu -17 294 1 1684 146 9 110 chr3 14436836 14436969 -213087609 - AluJo SINE Alu -226 86 1 499 230 138 0 chr3 14436995 14437147 -213087431 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 14437152 14437255 -213087323 - L2 LINE L2 -32 3281 3180 2375 104 10 0 chr3 14437911 14438220 -213086358 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 14438339 14438369 -213086209 + AT_rich Low_complexity Low_complexity 1 30 0 1711 154 70 0 chr3 14438547 14438819 -213085759 - AluJo SINE Alu -21 291 1 237 296 99 59 chr3 14438867 14439000 -213085578 - L1MC/D LINE L1 -1926 5882 5756 2152 138 0 13 chr3 14439000 14439174 -213085404 - AluSx SINE Alu -5 307 137 2187 132 0 0 chr3 14439174 14439469 -213085109 - AluSx SINE Alu -17 295 1 2152 138 0 13 chr3 14439469 14439605 -213084973 - AluSx SINE Alu -175 137 1 237 296 99 59 chr3 14439605 14439775 -213084803 - L1MC/D LINE L1 -2052 5756 5567 315 289 240 10 chr3 14439982 14440290 -213084288 - L2 LINE L2 -9 3304 2926 2013 146 69 50 chr3 14441004 14441063 -213083515 + MER65A LTR ERV1 1 57 -388 2024 106 46 7 chr3 14441063 14441346 -213083232 + AluSx SINE Alu 1 294 -18 2013 146 69 50 chr3 14441346 14441690 -213082888 + MER65A LTR ERV1 57 412 -33 2442 99 0 3 chr3 14441691 14442004 -213082574 - AluSx SINE Alu 0 312 1 2575 56 3 0 chr3 14442010 14442316 -213082262 - AluY SINE Alu -4 307 1 1081 70 8 0 chr3 14442316 14442445 -213082133 - AluSq/x SINE Alu -183 130 1 25 0 0 0 chr3 14442446 14442471 -213082107 + AT_rich Low_complexity Low_complexity 1 25 0 2059 150 0 3 chr3 14442507 14442807 -213081771 - AluSx SINE Alu -13 299 1 2211 70 3 14 chr3 14443171 14443482 -213081096 + AluY SINE Alu 1 308 0 1179 287 76 12 chr3 14443652 14444084 -213080494 - MLT1J LTR MaLR -50 461 2 2527 36 19 26 chr3 14444459 14444766 -213079812 - AluY SINE Alu -6 305 1 895 168 38 32 chr3 14444823 14445008 -213079570 + MER5A DNA MER1_type 4 189 0 2553 68 3 3 chr3 14445011 14445319 -213079259 + AluSp SINE Alu 1 308 -5 2243 112 3 6 chr3 14445329 14445641 -213078937 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 14445641 14445829 -213078749 + AluSg/x SINE Alu 134 305 0 1018 171 0 63 chr3 14446515 14446720 -213077858 - AluJo SINE Alu -1 311 120 843 168 60 12 chr3 14446720 14446887 -213077691 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 14447318 14447475 -213077103 - MER103 DNA DNA -3 163 1 2046 117 7 48 chr3 14448078 14448250 -213076328 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 14448250 14448281 -213076297 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 14448281 14448565 -213076013 - AluSp SINE Alu -28 285 1 2046 117 7 48 chr3 14448565 14448700 -213075878 - AluSx SINE Alu -192 120 1 514 303 112 45 chr3 14448702 14449058 -213075520 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 14449673 14449718 -213074860 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 14449763 14449879 -213074699 - MIR SINE MIR -106 156 38 1216 134 0 11 chr3 14450006 14450185 -213074393 - AluSg/x SINE Alu -1 311 135 362 241 12 18 chr3 14450478 14450589 -213073989 - MLT1I LTR MaLR 0 409 318 2537 50 0 3 chr3 14450751 14451048 -213073530 + AluY SINE Alu 1 296 -15 535 243 43 37 chr3 14451187 14451473 -213073105 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 14451619 14451640 -213072938 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 382 49 33 0 chr3 14451764 14451825 -213072753 + (TG)n Simple_repeat Simple_repeat 1 63 0 1901 98 0 0 chr3 14452414 14452650 -213071928 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 14453060 14453379 -213071199 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 14453828 14453986 -213070592 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 14455013 14455301 -213069277 + AluJo SINE Alu 1 296 -16 200 231 0 39 chr3 14455330 14455382 -213069196 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 14455849 14456153 -213068425 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 14456834 14457153 -213067425 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 14457309 14457605 -213066973 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 14457656 14457968 -213066610 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 14458216 14458374 -213066204 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 14458755 14458868 -213065710 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 14459093 14459180 -213065398 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 14459475 14459619 -213064959 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 14459623 14459926 -213064652 - AluSx SINE Alu -9 303 1 395 242 40 16 chr3 14459928 14460052 -213064526 - MIR SINE MIR -62 146 20 377 262 172 47 chr3 14460297 14460355 -213064223 + L1ME4a LINE L1 5665 5714 -407 1865 158 10 13 chr3 14460355 14460653 -213063925 + AluJo SINE Alu 1 297 -15 377 262 172 47 chr3 14460653 14460827 -213063751 + L1ME4a LINE L1 5714 5926 -195 713 217 25 31 chr3 14460851 14461012 -213063566 - MIR SINE MIR -17 245 86 271 208 0 65 chr3 14461210 14461287 -213063291 - MIR SINE MIR -139 123 52 371 304 138 7 chr3 14461612 14461750 -213062828 + MIR SINE MIR 28 183 -79 2342 105 0 0 chr3 14462080 14462386 -213062192 + AluY SINE Alu 1 306 -5 2011 142 13 3 chr3 14462420 14462723 -213061855 - AluJo SINE Alu 0 312 7 1994 139 14 17 chr3 14462741 14463036 -213061542 - AluJb SINE Alu -18 294 1 2300 76 31 3 chr3 14463371 14463661 -213060917 - AluSc SINE Alu -11 298 1 242 349 112 18 chr3 14463870 14464039 -213060539 - MIR SINE MIR -27 235 51 1998 106 0 22 chr3 14464249 14464524 -213060054 + AluSx SINE Alu 44 312 0 359 226 69 0 chr3 14464751 14464853 -213059725 - L1MC5 LINE L1 -35 7926 7818 183 229 86 57 chr3 14465380 14465450 -213059128 + MER5A DNA MER1_type 1 72 -117 240 295 32 0 chr3 14465524 14465619 -213058959 - MER113 DNA MER1_type? -415 106 9 322 206 52 81 chr3 14465739 14465875 -213058703 - LTR16B LTR ERVL -4 460 329 2322 108 0 0 chr3 14466288 14466584 -213057994 - AluSx SINE Alu -10 302 7 1583 101 18 0 chr3 14466597 14466814 -213057764 - AluSg/x SINE Alu -19 293 73 210 37 0 0 chr3 14466814 14466841 -213057737 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 731 238 21 0 chr3 14466841 14466984 -213057594 - FRAM SINE Alu -19 147 2 2328 112 3 0 chr3 14467444 14467748 -213056830 + AluSx SINE Alu 1 305 -7 540 225 7 80 chr3 14467918 14468045 -213056533 + MIR SINE MIR 89 205 -57 1598 157 25 46 chr3 14468045 14468215 -213056363 - AluJo SINE Alu -22 290 127 2583 70 0 0 chr3 14468215 14468517 -213056061 + AluY SINE Alu 1 302 -9 1598 157 25 46 chr3 14468517 14468626 -213055952 - AluJo SINE Alu -185 127 17 540 225 7 80 chr3 14468626 14468649 -213055929 + MIR SINE MIR 205 228 -34 321 328 81 15 chr3 14469007 14469205 -213055373 + MIR SINE MIR 40 250 -12 2358 103 0 3 chr3 14469642 14469954 -213054624 - AluSx SINE Alu -1 311 1 182 33 67 0 chr3 14469955 14469985 -213054593 + T-rich Low_complexity Low_complexity 2 33 0 854 167 0 0 chr3 14469988 14470120 -213054458 + AluJb SINE Alu 157 288 -24 639 226 27 21 chr3 14470122 14470308 -213054270 + ORSL DNA AcHobo 89 275 0 809 153 0 0 chr3 14470340 14470458 -213054120 + FLAM_A SINE Alu 2 119 -23 586 190 0 0 chr3 14470488 14470588 -213053990 + AluJb SINE Alu 26 125 -187 2135 117 13 13 chr3 14470589 14470896 -213053682 - AluSx SINE Alu -5 307 1 727 172 52 0 chr3 14471096 14471230 -213053348 - FLAM_C SINE Alu -1 142 2 1915 149 3 7 chr3 14471242 14471530 -213053048 - AluJo SINE Alu -25 287 1 1125 111 81 77 chr3 14471558 14471793 -213052785 - MER46A DNA MER2_type 0 236 1 937 29 0 0 chr3 14471933 14472038 -213052540 - AluSc SINE Alu -204 105 1 1299 163 10 63 chr3 14472688 14472989 -213051589 - AluSq SINE Alu -28 285 1 1944 127 0 17 chr3 14473165 14473457 -213051121 + AluSx SINE Alu 1 287 -25 645 145 40 24 chr3 14473509 14473633 -213050945 + AluY SINE Alu 182 307 -4 320 256 26 83 chr3 14473743 14473811 -213050767 + MIR SINE MIR 114 184 -78 875 165 0 88 chr3 14473811 14473993 -213050585 - FRAM SINE Alu 0 166 1 320 256 26 83 chr3 14473993 14474080 -213050498 + MIR SINE MIR 184 260 -2 1036 191 23 56 chr3 14474089 14474248 -213050330 - AluJo SINE Alu -21 291 139 2112 131 3 13 chr3 14474248 14474562 -213050016 - AluSx SINE Alu -1 311 1 1036 191 23 56 chr3 14474562 14474617 -213049961 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 14474650 14474679 -213049899 + AT_rich Low_complexity Low_complexity 1 29 0 2044 148 0 3 chr3 14474801 14475099 -213049479 - AluSx SINE Alu -15 297 1 759 179 8 0 chr3 14475196 14475319 -213049259 - FLAM_C SINE Alu -17 126 3 2539 50 0 3 chr3 14475351 14475650 -213048928 + AluY SINE Alu 1 298 -13 1566 207 4 0 chr3 14476286 14476542 -213048036 + AluJb SINE Alu 1 257 -55 2112 134 0 6 chr3 14476543 14476856 -213047722 - AluSx SINE Alu -1 311 1 24 85 0 0 chr3 14476933 14476992 -213047586 + AT_rich Low_complexity Low_complexity 1 59 0 295 335 26 79 chr3 14477272 14477358 -213047220 - MIR SINE MIR -16 246 170 2001 117 10 45 chr3 14477358 14477666 -213046912 - AluSx SINE Alu -15 297 1 295 335 26 79 chr3 14477666 14477731 -213046847 - MIR SINE MIR -92 170 103 970 142 58 0 chr3 14478811 14478966 -213045612 - AluSg/x SINE Alu -12 298 135 184 148 0 0 chr3 14479002 14479029 -213045549 - MIR3 SINE MIR -27 181 155 285 261 194 45 chr3 14479204 14479338 -213045240 - MIR3 SINE MIR -25 183 30 543 311 83 19 chr3 14479641 14479847 -213044731 - L2 LINE L2 -341 2973 2745 2329 118 7 0 chr3 14479847 14480152 -213044426 - AluSx SINE Alu -5 307 1 543 311 83 19 chr3 14480152 14480209 -213044369 - L2 LINE L2 -569 2745 2693 1411 234 55 18 chr3 14480278 14480676 -213043902 - MLT1J LTR MaLR 0 511 99 247 326 45 11 chr3 14480707 14480796 -213043782 - L2 LINE L2 -224 3048 2957 311 333 0 60 chr3 14480846 14480996 -213043582 + MIR3 SINE MIR 1 141 -67 2547 68 3 0 chr3 14481030 14481338 -213043240 + AluY SINE Alu 1 309 -2 362 56 0 19 chr3 14481418 14481472 -213043106 + (TG)n Simple_repeat Simple_repeat 1 53 0 198 143 0 0 chr3 14481598 14481633 -213042945 + (CA)n Simple_repeat Simple_repeat 2 36 0 411 247 131 73 chr3 14481796 14482055 -213042523 - MLT1K LTR MaLR -162 426 153 337 302 102 50 chr3 14482584 14482931 -213041647 + L2 LINE L2 2344 2714 -600 2322 75 0 56 chr3 14482931 14483252 -213041326 + AluSx SINE Alu 1 303 -9 337 302 102 50 chr3 14483252 14483288 -213041290 + L2 LINE L2 2714 2747 -567 2319 110 0 3 chr3 14483369 14483669 -213040909 + AluSx SINE Alu 1 299 -13 2222 108 7 7 chr3 14483679 14483985 -213040593 + AluSq SINE Alu 1 306 -7 382 313 27 34 chr3 14484027 14484174 -213040404 + MIR SINE MIR 98 243 -19 2416 68 3 19 chr3 14484457 14484767 -213039811 - AluSp SINE Alu -8 305 1 2282 127 0 3 chr3 14484890 14485198 -213039380 - AluSx SINE Alu -5 307 1 2493 82 0 0 chr3 14485725 14486028 -213038550 - AluSx SINE Alu -9 303 1 1254 184 0 21 chr3 14486900 14487133 -213037445 - AluJb SINE Alu 0 312 85 893 146 0 33 chr3 14487137 14487288 -213037290 - AluSq/x SINE Alu -166 146 1 234 0 0 0 chr3 14487310 14487336 -213037242 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2287 98 0 0 chr3 14487338 14487625 -213036953 - AluY SINE Alu -24 287 1 736 203 0 8 chr3 14487641 14487774 -213036804 - FLAM_C SINE Alu 0 133 2 2329 107 3 0 chr3 14488044 14488344 -213036234 + AluSp SINE Alu 1 301 -12 1742 91 5 0 chr3 14488639 14488858 -213035720 - AluSg SINE Alu -90 220 1 1329 95 6 0 chr3 14488858 14489027 -213035551 - AluSp SINE Alu -10 303 134 2298 96 10 3 chr3 14489027 14489328 -213035250 - AluY SINE Alu -8 303 1 1853 149 10 36 chr3 14489328 14489636 -213034942 - AluJb SINE Alu -11 301 1 212 234 0 0 chr3 14489711 14489758 -213034820 + L2 LINE L2 3267 3313 0 210 375 68 17 chr3 14489861 14490037 -213034541 - L2 LINE L2 -558 2756 2572 366 264 66 9 chr3 14490557 14490663 -213033915 + MER5A DNA MER1_type 78 189 0 2431 85 3 3 chr3 14490666 14490973 -213033605 + AluSp SINE Alu 1 307 -6 2114 126 0 7 chr3 14490983 14491277 -213033301 + AluSx SINE Alu 1 292 -20 838 131 0 51 chr3 14491315 14491452 -213033126 + FLAM_C SINE Alu 2 131 -2 1432 184 4 16 chr3 14491462 14491712 -213032866 + AluJo SINE Alu 3 249 -63 2497 39 0 0 chr3 14492061 14492366 -213032212 - AluY SINE Alu 0 305 1 1075 70 8 0 chr3 14492366 14492495 -213032083 - AluSq/x SINE Alu -183 130 1 25 0 0 0 chr3 14492496 14492521 -213032057 + AT_rich Low_complexity Low_complexity 1 25 0 2054 150 0 3 chr3 14492557 14492857 -213031721 - AluSx SINE Alu -13 299 1 1398 157 0 15 chr3 14493221 14493482 -213031096 + AluY SINE Alu 1 257 -54 244 288 116 30 chr3 14493804 14494037 -213030541 + L2 LINE L2 2605 2857 -457 217 289 175 57 chr3 14494093 14494287 -213030291 + L2 LINE L2 2893 3109 -163 369 330 0 10 chr3 14494600 14494703 -213029875 + MIR SINE MIR 21 122 -140 1885 124 10 42 chr3 14495220 14495364 -213029214 + AluJo SINE Alu 1 148 -164 2496 70 0 3 chr3 14495364 14495665 -213028913 + AluY SINE Alu 1 300 -11 1885 124 10 42 chr3 14495665 14495827 -213028751 + AluJo SINE Alu 148 297 -15 739 155 23 16 chr3 14496226 14496355 -213028223 + AluJo SINE Alu 6 135 -177 1732 84 5 0 chr3 14496513 14496728 -213027850 - AluSp SINE Alu -97 216 1 2390 88 0 3 chr3 14496902 14497198 -213027380 - AluSc SINE Alu -14 295 1 634 206 177 0 chr3 14497214 14497355 -213027223 + AluJo SINE Alu 132 297 -15 2025 153 0 0 chr3 14497379 14497673 -213026905 + AluSx SINE Alu 1 294 -18 405 250 56 0 chr3 14498644 14498752 -213025826 + L2 LINE L2 3191 3304 -9 204 40 0 0 chr3 14498871 14498896 -213025682 + (A)n Simple_repeat Simple_repeat 1 25 0 718 225 23 6 chr3 14499080 14499253 -213025325 + MER5B DNA MER1_type 1 176 -2 505 139 0 0 chr3 14499813 14499885 -213024693 - AluS SINE Alu -239 73 2 1918 161 0 7 chr3 14499986 14500284 -213024294 - AluJb SINE Alu -12 300 5 799 160 8 0 chr3 14500285 14500410 -213024168 - AluJo/FLAM SINE Alu -184 128 3 283 228 22 22 chr3 14500828 14500920 -213023658 + MIR3 SINE MIR 90 181 -27 524 292 65 34 chr3 14502010 14502392 -213022186 - MLT1J LTR MaLR -7 504 73 2371 104 3 0 chr3 14502476 14502784 -213021794 - AluSg SINE Alu -1 309 1 1553 255 106 38 chr3 14502811 14503576 -213021002 - HAL1 LINE L1 -96 2411 1595 2265 94 3 16 chr3 14504066 14504374 -213020204 - AluSg SINE Alu 0 310 7 2224 99 0 7 chr3 14504405 14504698 -213019880 - AluY SINE Alu -20 291 1 219 320 70 39 chr3 14504774 14504902 -213019676 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 14505077 14505101 -213019477 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 14505191 14505329 -213019249 + MIR SINE MIR 50 178 -84 2405 153 108 6 chr3 14505974 14506379 -213018199 + L1MB7 LINE L1 5390 5863 -315 4669 49 26 0 chr3 14506379 14506955 -213017623 + LTR10C LTR ERV1 1 591 0 2405 153 108 6 chr3 14506955 14507077 -213017501 + L1MB7 LINE L1 5863 5971 -207 2149 132 0 13 chr3 14507131 14507435 -213017143 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 14507442 14507496 -213017082 + L1MB7 LINE L1 6119 6175 -9 349 261 91 53 chr3 14507603 14507872 -213016706 - L1MC4a LINE L1 -549 5572 5487 2426 68 0 36 chr3 14507872 14508179 -213016399 - AluY SINE Alu -15 296 1 349 261 91 53 chr3 14508179 14508256 -213016322 - L1MC4a LINE L1 -634 5487 5414 2408 59 24 0 chr3 14508266 14508553 -213016025 - AluY SINE Alu -17 294 1 866 160 0 13 chr3 14508645 14508795 -213015783 - AluJb SINE Alu -11 301 154 2272 82 0 7 chr3 14508956 14509248 -213015330 - AluY SINE Alu -21 290 1 808 155 0 16 chr3 14509250 14509379 -213015199 - AluJo/FLAM SINE Alu -180 132 6 2261 109 13 10 chr3 14509429 14509740 -213014838 + AluSx SINE Alu 1 312 0 994 167 29 17 chr3 14509750 14509924 -213014654 - AluJb SINE Alu -18 294 119 2343 115 0 0 chr3 14510031 14510335 -213014243 + AluSx SINE Alu 1 304 -8 183 270 80 90 chr3 14511332 14511432 -213013146 - L2 LINE L2 0 3272 3174 2432 57 0 20 chr3 14511527 14511828 -213012750 + AluY SINE Alu 1 295 -16 1933 110 57 11 chr3 14512020 14512301 -213012277 + AluSx SINE Alu 1 294 -18 2177 121 0 10 chr3 14512538 14512836 -213011742 + AluSq SINE Alu 1 295 -18 655 198 9 0 chr3 14512901 14513017 -213011561 + FLAM_A SINE Alu 1 117 -16 23 33 0 0 chr3 14513017 14513047 -213011531 + AT_rich Low_complexity Low_complexity 1 30 0 2257 100 7 3 chr3 14513053 14513352 -213011226 - AluSx SINE Alu -12 300 1 851 146 14 0 chr3 14513352 14513496 -213011082 - L1M4 LINE L1 -686 5492 5347 408 161 210 0 chr3 14513582 14513706 -213010872 + L2 LINE L2 2827 2976 -337 1648 211 113 43 chr3 14513734 14513772 -213010806 - MLT1D LTR MaLR -2 503 469 4352 149 75 92 chr3 14513772 14514861 -213009717 - MER11C LTR ERVK 0 1071 1 1648 211 113 43 chr3 14514861 14515292 -213009286 - MLT1D LTR MaLR -36 469 1 389 218 0 36 chr3 14515437 14515547 -213009031 + L2 LINE L2 3180 3285 -28 283 251 62 11 chr3 14516097 14516220 -213008358 + MIR SINE MIR 46 140 -68 859 189 38 32 chr3 14517003 14517188 -213007390 - MER5A DNA MER1_type 0 189 4 2472 36 19 26 chr3 14517245 14517552 -213007026 + AluY SINE Alu 1 305 -6 1160 287 76 12 chr3 14517927 14518359 -213006219 + MLT1J LTR MaLR 2 461 -50 234 0 0 0 chr3 14518529 14518555 -213006023 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1759 148 3 11 chr3 14518650 14518934 -213005644 - AluSx SINE Alu -30 282 1 24 85 0 0 chr3 14519011 14519070 -213005508 + AT_rich Low_complexity Low_complexity 1 59 0 1972 117 10 45 chr3 14519436 14519744 -213004834 - AluSx SINE Alu -15 297 1 2180 103 14 0 chr3 14520026 14520318 -213004260 + AluSx SINE Alu 6 301 -11 280 190 0 127 chr3 14520487 14520542 -213004036 + Tigger2 DNA MER2_type 1 31 -403 1989 150 3 3 chr3 14520542 14520835 -213003743 - AluSx SINE Alu -19 293 1 280 190 0 127 chr3 14520835 14520858 -213003720 + Tigger2 DNA MER2_type 31 55 -379 * 1234 118 98 10 chr3 14520842 14521045 -213003533 + Tigger2 DNA MER2_type 2267 2487 -231 427 99 56 14 chr3 14521045 14521149 -213003429 - AluSc SINE Alu 0 311 205 * 485 73 0 0 chr3 14521144 14521212 -213003366 + Alu SINE Alu 236 303 -9 2131 132 0 3 chr3 14521222 14521517 -213003061 + AluSx SINE Alu 1 294 -18 1392 73 0 0 chr3 14522079 14522244 -213002334 - AluSg/x SINE Alu -14 298 134 2189 134 0 0 chr3 14522244 14522542 -213002036 - AluSx SINE Alu -14 298 1 1059 159 43 19 chr3 14523159 14523367 -213001211 + L1MB7 LINE L1 5925 6137 -47 198 277 0 21 chr3 14523510 14523557 -213001021 + MIR3 SINE MIR 114 159 -49 765 186 117 0 chr3 14523784 14523929 -213000649 - AluSp SINE Alu -17 296 135 2138 79 6 103 chr3 14523930 14524270 -213000308 - AluSx SINE Alu -5 307 1 1658 153 0 62 chr3 14524476 14524783 -212999795 + AluJo SINE Alu 6 293 -19 2319 96 3 0 chr3 14525477 14525779 -212998799 - AluSg1 SINE Alu -6 303 1 2408 93 3 0 chr3 14525779 14526081 -212998497 - AluSx SINE Alu -9 303 1 227 213 16 16 chr3 14526230 14526291 -212998287 + AluS SINE Alu 12 72 -227 467 183 0 0 chr3 14526500 14526582 -212997996 + AluSp/q SINE Alu 226 307 -6 180 0 0 0 chr3 14526741 14526761 -212997817 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2193 93 3 10 chr3 14527008 14527308 -212997270 - AluY SINE Alu -13 298 1 2474 76 0 3 chr3 14527555 14527858 -212996720 - AluYa5 SINE Alu -9 302 1 1006 155 0 42 chr3 14528375 14528543 -212996035 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14528543 14528570 -212996008 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1902 101 0 88 chr3 14528571 14528877 -212995701 - AluSc SINE Alu -30 279 1 1655 165 49 0 chr3 14529680 14529965 -212994613 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 14530469 14530491 -212994087 + AT_rich Low_complexity Low_complexity 1 22 0 2352 98 0 3 chr3 14530838 14531134 -212993444 - AluSg SINE Alu -15 295 1 2227 93 0 27 chr3 14532188 14532489 -212992089 + AluSx SINE Alu 1 293 -19 264 154 0 0 chr3 14532490 14532529 -212992049 - AluJo/FLAM SINE Alu -177 125 87 360 233 158 14 chr3 14532532 14532678 -212991900 + L2 LINE L2 3131 3297 -16 400 260 13 89 chr3 14532760 14532906 -212991672 + L2 LINE L2 3095 3218 -95 2421 85 3 0 chr3 14532906 14533211 -212991367 - AluSg SINE Alu -4 306 1 400 260 13 89 chr3 14533211 14533299 -212991279 + L2 LINE L2 3218 3311 -2 203 0 37 0 chr3 14534066 14534093 -212990485 + (TG)n Simple_repeat Simple_repeat 2 29 0 1649 81 5 5 chr3 14534144 14534354 -212990224 - AluSq SINE Alu -28 285 76 2593 49 7 3 chr3 14534355 14534662 -212989916 - AluY SINE Alu -3 308 1 591 114 0 0 chr3 14534666 14534745 -212989833 - AluSq SINE Alu -232 80 2 441 167 76 53 chr3 14535098 14535230 -212989348 + MIR SINE MIR 77 211 -51 2187 113 10 0 chr3 14535274 14535575 -212989003 - AluSx SINE Alu -6 306 3 2056 170 109 13 chr3 14535742 14536048 -212988530 - L1MB8 LINE L1 -9 6169 5805 2421 83 0 3 chr3 14536048 14536348 -212988230 - AluY SINE Alu -12 299 1 2056 170 109 13 chr3 14536348 14536489 -212988089 - L1MB8 LINE L1 -373 5805 5679 1383 195 33 0 chr3 14536489 14536730 -212987848 - AluJb SINE Alu -63 249 1 513 148 168 0 chr3 14536731 14536832 -212987746 - L1MB8 LINE L1 -571 5607 5490 2391 106 3 0 chr3 14536832 14537143 -212987435 - AluSx SINE Alu 0 312 1 1576 101 18 0 chr3 14537151 14537369 -212987209 - AluSg/x SINE Alu -18 292 71 210 37 0 0 chr3 14537369 14537396 -212987182 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 656 248 21 7 chr3 14537396 14537541 -212987037 - FRAM SINE Alu -19 147 1 370 275 101 28 chr3 14537655 14537838 -212986740 - MIR SINE MIR -50 212 20 2413 87 3 16 chr3 14538218 14538530 -212986048 - AluSg SINE Alu 0 310 3 418 290 70 55 chr3 14539287 14539487 -212985091 - MER63A DNA MER1_type -3 207 5 244 289 125 13 chr3 14539915 14540067 -212984511 + MIR SINE MIR 72 240 -22 289 209 0 30 chr3 14540611 14540678 -212983900 + L3 LINE CR1 1227 1291 -286 316 263 74 0 chr3 14541474 14541569 -212983009 + L2 LINE L2 3195 3296 -17 260 250 15 0 chr3 14541651 14541719 -212982859 + (TA)n Simple_repeat Simple_repeat 2 70 0 210 202 0 56 chr3 14542008 14542097 -212982481 + A-rich Low_complexity Low_complexity 1 84 0 4653 238 32 7 chr3 14542214 14543404 -212981174 - L1P LINE L1 -3497 2649 1430 356 313 17 0 chr3 14543523 14543638 -212980940 + L1ME3A LINE L1 5777 5893 -277 1750 234 140 20 chr3 14544629 14545223 -212979355 + L1MC4 LINE L1 6485 7149 -893 300 186 0 0 chr3 14545217 14545276 -212979302 + L1MC4a LINE L1 7137 7195 -613 * 14544 71 19 7 chr3 14545376 14546341 -212978237 + L1P LINE L1 2706 3658 -2488 366 23 0 0 chr3 14546341 14546384 -212978194 + (CA)n Simple_repeat Simple_repeat 2 44 0 14544 71 19 7 chr3 14546384 14547398 -212977180 + L1P LINE L1 3658 4708 -1438 32 57 0 0 chr3 14547971 14548024 -212976554 + AT_rich Low_complexity Low_complexity 1 53 0 277 195 109 70 chr3 14548024 14548152 -212976426 - MER113 DNA MER1_type? -386 135 3 203 171 0 0 chr3 14548216 14548257 -212976321 + (TA)n Simple_repeat Simple_repeat 2 42 0 334 269 0 48 chr3 14549054 14549240 -212975338 + T-rich Low_complexity Low_complexity 2 178 0 3789 90 52 0 chr3 14549399 14549954 -212974624 + L1PA10 LINE L1 5585 6168 0 288 239 109 22 chr3 14549968 14550060 -212974518 - L1ME LINE L1 -594 5572 5473 1533 228 78 38 chr3 14550087 14550614 -212973964 - L1ME1 LINE L1 -26 6140 5593 1032 163 28 0 chr3 14551109 14551287 -212973291 + AluJb SINE Alu 120 302 -10 199 288 198 9 chr3 14551407 14551518 -212973060 - MIR SINE MIR 0 262 131 12202 80 13 2 chr3 14552106 14553774 -212970804 - L1P LINE L1 -812 5334 3649 326 280 60 0 chr3 14553923 14554023 -212970555 + MIR SINE MIR 86 191 -71 397 192 208 0 chr3 14554581 14554701 -212969877 + MIR SINE MIR 28 172 -90 367 312 60 44 chr3 14555259 14555509 -212969069 + MIR SINE MIR 8 261 -1 277 314 64 7 chr3 14555807 14555947 -212968631 - L3 LINE CR1 -794 783 636 7726 100 17 2 chr3 14556379 14557416 -212967162 - L1P3 LINE L1 -5408 1053 1 335 279 103 0 chr3 14558424 14558560 -212966018 - MER5C DNA MER1_type -173 151 2 2712 159 98 12 chr3 14559614 14560178 -212964400 - LTR1B LTR ERV1 0 785 145 401 264 43 14 chr3 14560625 14560765 -212963813 + MLT1K LTR MaLR 374 517 -71 257 275 0 38 chr3 14560842 14560922 -212963656 + MIR SINE MIR 125 201 -61 209 360 67 0 chr3 14562566 14562641 -212961937 + L2 LINE L2 3143 3222 -50 533 338 40 4 chr3 14562661 14562889 -212961689 + MIR SINE MIR 20 255 -7 251 296 93 9 chr3 14563353 14563461 -212961117 - MIR SINE MIR -52 210 94 383 211 0 0 chr3 14563749 14563820 -212960758 + AluJ/FRAM SINE Alu 232 302 0 278 250 0 56 chr3 14563821 14563893 -212960685 - AluYb8 SINE Alu -116 192 125 728 279 88 30 chr3 14563893 14564536 -212960042 - L1MEc LINE L1 -5640 756 36 560 344 106 34 chr3 14564966 14565672 -212958906 - L2 LINE L2 -475 2839 2083 8513 143 37 20 chr3 14566314 14567735 -212956843 + Tigger1 DNA MER2_type 1 1444 -974 1245 253 103 54 chr3 14567835 14568535 -212956043 + L1MC4 LINE L1 7309 8042 0 485 276 158 33 chr3 14568816 14569710 -212954868 + L1ME LINE L1 4465 5477 -685 2724 67 56 0 chr3 14569810 14570116 -212954462 - L1P LINE L1 -3512 2634 2302 181 57 57 0 chr3 14570116 14570151 -212954427 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2724 67 56 0 chr3 14570151 14570217 -212954361 - L1P LINE L1 -3844 2302 2241 430 316 60 23 chr3 14570240 14570455 -212954123 + MIR SINE MIR 33 255 -7 1715 302 32 13 chr3 14570633 14571190 -212953388 + L1M2b LINE L1 19 586 -6623 323 155 121 0 chr3 14571193 14571251 -212953327 + Charlie3 DNA MER1_type 6 70 -2640 * 1442 162 57 142 chr3 14571237 14571589 -212952989 + Charlie3 DNA MER1_type 17 2711 0 362 248 77 43 chr3 14571658 14571775 -212952803 + L1M2b LINE L1 677 797 -6412 1820 189 20 3 chr3 14572116 14572466 -212952112 - L1PA13 LINE L1 -4900 2674 2319 209 83 28 0 chr3 14572515 14572551 -212952027 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 251 339 38 34 chr3 14573406 14573645 -212950933 - L1PA13 LINE L1 -7341 240 1 1800 183 6 10 chr3 14573678 14573990 -212950588 - AluSx SINE Alu -1 311 1 1709 178 58 30 chr3 14574447 14574812 -212949766 + THE1C LTR MaLR 1 375 0 2260 105 0 0 chr3 14575187 14575481 -212949097 - AluY SINE Alu -17 294 1 1024 161 17 17 chr3 14575911 14576091 -212948487 - AluJb SINE Alu -1 311 132 2077 147 10 0 chr3 14576092 14576398 -212948180 - AluSx SINE Alu -3 309 1 1323 105 41 0 chr3 14576935 14577107 -212947471 + AluSq SINE Alu 1 179 -134 1339 134 9 22 chr3 14577406 14577637 -212946941 - L1MB3 LINE L1 -4 6179 5952 1090 239 46 0 chr3 14577661 14577941 -212946637 - L1MC4 LINE L1 -456 7586 7294 2094 116 0 20 chr3 14577951 14578244 -212946334 - AluSq SINE Alu -26 287 1 251 213 16 16 chr3 14578245 14578306 -212946272 + MIR SINE MIR 202 262 0 208 287 25 82 chr3 14578787 14578909 -212945669 - MER5B DNA MER1_type -29 149 35 2017 108 7 10 chr3 14578912 14579200 -212945378 - AluY SINE Alu -20 291 5 426 293 28 83 chr3 14579452 14579705 -212944873 + MIR SINE MIR 16 254 -8 2226 101 0 14 chr3 14580185 14580482 -212944096 + AluSg1 SINE Alu 1 293 -16 219 36 0 0 chr3 14580482 14580510 -212944068 + (TA)n Simple_repeat Simple_repeat 2 29 0 878 150 0 0 chr3 14581435 14581568 -212943010 - FLAM_C SINE Alu 0 133 1 1773 79 0 0 chr3 14582082 14582297 -212942281 + AluSq SINE Alu 83 297 -16 1304 107 122 0 chr3 14582571 14582776 -212941802 + MER30 DNA MER1_type 1 230 0 479 243 79 13 chr3 14582969 14583121 -212941457 - MLT1K LTR MaLR -8 580 419 1711 83 0 9 chr3 14583616 14583844 -212940734 + AluY SINE Alu 80 305 -6 381 358 49 32 chr3 14583909 14584130 -212940448 - L2 LINE L2 -194 3078 2850 308 209 0 0 chr3 14584130 14584197 -212940381 + L1MB8 LINE L1 6103 6169 -9 381 358 49 32 chr3 14584197 14584259 -212940319 - L2 LINE L2 -422 2850 2791 231 291 25 0 chr3 14584448 14584527 -212940051 + MIR SINE MIR 57 137 -71 636 136 18 36 chr3 14584533 14584643 -212939935 + L1M4 LINE L1 5562 5669 -509 2274 106 0 3 chr3 14584645 14584946 -212939632 + AluSg SINE Alu 1 300 -10 412 153 0 0 chr3 14584959 14585018 -212939560 + AluS SINE Alu 4 62 -256 1089 122 0 0 chr3 14585024 14585180 -212939398 + AluSg/x SINE Alu 155 310 0 5925 163 17 4 chr3 14585183 14586833 -212937745 + L1PB1 LINE L1 4477 6144 -7 402 288 50 87 chr3 14587285 14587474 -212937104 + HAL1 LINE L1 11 205 -2302 675 224 6 33 chr3 14587474 14587657 -212936921 + MER104 DNA MER2_type 2 179 -1 402 288 50 87 chr3 14587657 14587905 -212936673 + HAL1 LINE L1 205 432 -2075 268 130 74 0 chr3 14587917 14587971 -212936607 - MER53 DNA DNA -6 183 126 * 392 194 21 11 chr3 14587956 14588049 -212936529 + MER53 DNA DNA 88 181 -8 2139 119 0 31 chr3 14588193 14588511 -212936067 - AluSg SINE Alu -2 308 1 2250 127 0 3 chr3 14588524 14588831 -212935747 - AluSx SINE Alu -6 306 1 242 302 19 19 chr3 14588927 14589033 -212935545 + L2 LINE L2 2947 3052 -220 219 88 0 0 chr3 14589276 14589310 -212935268 - MIR SINE MIR -66 142 109 233 118 0 0 chr3 14589538 14589572 -212935006 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 216 21 103 chr3 14590904 14591001 -212933577 - MIR SINE MIR -14 248 160 207 88 0 0 chr3 14591505 14591539 -212933039 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 711 191 0 0 chr3 14591539 14591654 -212932924 - FLAM_C SINE Alu -23 120 6 278 200 17 0 chr3 14591698 14591758 -212932820 + MIR SINE MIR 88 148 -60 199 345 81 0 chr3 14592235 14592322 -212932256 + MIR SINE MIR 29 122 -86 2279 90 3 3 chr3 14592634 14592934 -212931644 - AluSp SINE Alu 0 313 14 2258 93 0 0 chr3 14593082 14593371 -212931207 - AluY SINE Alu -17 294 6 447 100 0 0 chr3 14593391 14593461 -212931117 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1934 157 0 0 chr3 14593461 14593741 -212930837 - AluJb SINE Alu -32 280 1 2082 151 0 3 chr3 14593792 14594103 -212930475 - AluJo SINE Alu -2 310 1 2163 108 0 7 chr3 14594116 14594412 -212930166 - AluSq SINE Alu -19 294 1 614 203 112 56 chr3 14594594 14594791 -212929787 - MIR SINE MIR -50 212 5 385 238 165 61 chr3 14594814 14594978 -212929600 - MIR SINE MIR -60 202 22 364 245 129 29 chr3 14595778 14595917 -212928661 + MIR SINE MIR 14 166 -96 201 275 125 0 chr3 14595965 14596045 -212928533 + MIR SINE MIR 169 258 -4 317 308 19 0 chr3 14596053 14596160 -212928418 - MIR SINE MIR -108 154 46 2361 102 0 0 chr3 14596279 14596582 -212927996 - AluSx SINE Alu -9 303 1 534 234 48 30 chr3 14596585 14596752 -212927826 + L2 LINE L2 3135 3304 -9 1629 144 3 59 chr3 14596766 14597071 -212927507 + AluJo SINE Alu 24 311 -1 598 279 201 20 chr3 14597302 14597750 -212926828 - L3 LINE CR1 -308 1269 741 424 277 174 0 chr3 14598396 14598591 -212925987 - MIR SINE MIR -14 248 20 1018 114 0 0 chr3 14598612 14598744 -212925834 - AluSq/x SINE Alu -180 132 1 2165 127 0 0 chr3 14599290 14599589 -212924989 - AluSx SINE Alu -13 299 1 649 228 152 66 chr3 14599639 14600061 -212924517 - HAL1 LINE L1 -72 2435 1978 551 267 48 40 chr3 14600125 14600477 -212924101 + L1MC5 LINE L1 7428 7782 -179 2086 132 0 7 chr3 14600539 14600835 -212923743 + AluSx SINE Alu 1 294 -18 2547 63 0 0 chr3 14600835 14601137 -212923441 + AluY SINE Alu 1 303 -8 194 299 19 58 chr3 14601442 14601596 -212922982 + L2 LINE L2 2944 3091 -181 700 192 116 6 chr3 14602540 14602712 -212921866 - L1 LINE L1 -763 5383 5193 540 194 0 0 chr3 14602733 14602831 -212921747 - U13 snRNA snRNA -2 102 5 333 168 107 15 chr3 14602845 14602862 -212921716 - L1M LINE L1 -801 5345 5331 2030 126 54 0 chr3 14602862 14603156 -212921422 - AluSx SINE Alu -2 310 1 333 168 107 15 chr3 14603156 14603278 -212921300 - L1M LINE L1 -815 5331 5226 218 269 104 0 chr3 14603526 14603593 -212920985 + L2 LINE L2 3149 3222 -50 1529 191 7 7 chr3 14603710 14603993 -212920585 - AluJo SINE Alu -24 288 6 22 0 0 0 chr3 14603998 14604020 -212920558 + AT_rich Low_complexity Low_complexity 1 22 0 336 324 83 0 chr3 14604294 14604439 -212920139 + MIR3 SINE MIR 52 208 0 535 87 0 33 chr3 14604491 14604583 -212919995 - FLAM_C SINE Alu 0 143 55 886 125 8 0 chr3 14604612 14604740 -212919838 + FLAM_C SINE Alu 2 130 -3 1368 162 0 26 chr3 14604774 14605003 -212919575 + AluJb SINE Alu 85 307 -5 301 188 145 34 chr3 14605120 14605237 -212919341 + L1ME4a LINE L1 5976 6105 -16 2111 114 3 0 chr3 14605679 14605969 -212918609 - AluSg SINE Alu -19 291 1 372 89 0 18 chr3 14608156 14608369 -212916209 + AluSx SINE Alu 1 292 -8 278 205 169 0 chr3 14608958 14609041 -212915537 - MIR SINE MIR -49 213 117 2336 87 0 7 chr3 14609256 14609556 -212915022 + AluY SINE Alu 1 298 -13 2430 70 3 10 chr3 14609567 14609865 -212914713 + AluSc SINE Alu 1 296 -13 188 305 142 21 chr3 14609953 14610094 -212914484 - MIR SINE MIR -70 192 35 1214 129 16 5 chr3 14610263 14610449 -212914129 - AluSg/x SINE Alu -18 292 105 1922 164 0 0 chr3 14610498 14610796 -212913782 + AluSx SINE Alu 1 298 -14 225 222 0 0 chr3 14610798 14610852 -212913726 - MER20B DNA MER1_type -726 57 4 1766 173 10 7 chr3 14611036 14611331 -212913247 - AluJb SINE Alu -7 305 10 1982 109 3 7 chr3 14611392 14611686 -212912892 + AluSg SINE Alu 1 293 -17 2027 109 3 16 chr3 14611698 14612001 -212912577 + AluSx SINE Alu 3 301 -11 827 143 8 0 chr3 14612212 14612338 -212912240 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 14612413 14612441 -212912137 + AT_rich Low_complexity Low_complexity 1 28 0 1693 121 0 112 chr3 14612662 14613002 -212911576 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 14613005 14613136 -212911442 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 14613179 14613203 -212911375 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 14613530 14613718 -212910860 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 14614548 14614673 -212909905 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 14614683 14614839 -212909739 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 14614905 14615173 -212909405 - L2 LINE L2 -38 3234 2924 264 204 19 0 chr3 14616126 14616186 -212908392 - MIR SINE MIR -58 150 93 1638 128 85 3 chr3 14616282 14616564 -212908014 + AluJb SINE Alu 1 305 -7 1519 153 34 27 chr3 14616732 14616994 -212907584 - AluJo SINE Alu -48 264 1 240 197 115 0 chr3 14617552 14617613 -212906965 + L2 LINE L2 2792 2859 -455 185 290 129 32 chr3 14617714 14617838 -212906740 - L2 LINE L2 -554 2760 2625 2364 71 0 7 chr3 14618718 14619026 -212905552 - AluSx SINE Alu -6 306 1 1668 114 28 48 chr3 14619026 14619315 -212905263 - AluJb SINE Alu -29 283 1 180 111 0 0 chr3 14619397 14619424 -212905154 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 2135 112 0 3 chr3 14619424 14619728 -212904850 - AluSq SINE Alu -10 303 1 1870 122 17 7 chr3 14619885 14620172 -212904406 - AluSx SINE Alu -22 290 1 1830 144 13 7 chr3 14620212 14620511 -212904067 + AluJb SINE Alu 1 301 -11 2228 74 0 17 chr3 14620841 14621140 -212903438 - AluSp SINE Alu -19 294 1 1941 116 0 41 chr3 14621316 14621635 -212902943 + AluSq SINE Alu 1 306 -7 384 313 27 34 chr3 14621677 14621824 -212902754 + MIR SINE MIR 98 243 -19 2296 65 3 19 chr3 14622107 14622417 -212902161 - AluSp SINE Alu -8 305 1 2130 122 0 3 chr3 14622545 14622848 -212901730 - AluSx SINE Alu -10 302 1 2410 63 0 0 chr3 14623375 14623676 -212900902 - AluSg SINE Alu -9 301 1 231 36 0 0 chr3 14623834 14623862 -212900716 + (CA)n Simple_repeat Simple_repeat 1 28 0 26 74 0 0 chr3 14623902 14623956 -212900622 + AT_rich Low_complexity Low_complexity 1 54 0 406 233 86 55 chr3 14623958 14624141 -212900437 + L1ME1 LINE L1 5905 6164 -2 1657 128 34 60 chr3 14624178 14624476 -212900102 + AluSx SINE Alu 1 290 -22 2188 113 0 0 chr3 14624494 14624796 -212899782 + AluSq SINE Alu 1 302 -11 2011 135 3 3 chr3 14625704 14626016 -212898562 - AluSx SINE Alu 0 312 1 2177 52 41 17 chr3 14626412 14626702 -212897876 - AluY SINE Alu -14 297 1 1362 31 0 0 chr3 14626714 14626877 -212897701 - L1PA2 LINE L1 0 6155 5993 632 191 0 30 chr3 14626882 14627013 -212897565 - FLAM_A SINE Alu -6 127 1 2080 138 0 0 chr3 14627782 14628094 -212896484 + AluSx SINE Alu 1 312 0 1961 111 27 10 chr3 14628127 14628424 -212896154 + AluSx SINE Alu 1 302 -10 330 284 149 14 chr3 14628864 14629012 -212895566 + MIR SINE MIR 22 189 -73 1280 180 103 4 chr3 14629112 14629384 -212895194 + AluJo SINE Alu 1 299 -13 2486 65 0 0 chr3 14629734 14630043 -212894535 + AluSc SINE Alu 1 309 0 1839 84 81 15 chr3 14630053 14630326 -212894252 + AluSg1 SINE Alu 1 291 -18 1418 211 65 0 chr3 14630326 14630667 -212893911 + L1MB4 LINE L1 5818 6180 0 2009 122 0 3 chr3 14630774 14631069 -212893509 - AluSx SINE Alu -18 294 1 254 235 235 0 chr3 14631413 14631511 -212893067 - L2 LINE L2 -1 3312 3192 * 287 226 49 78 chr3 14631495 14631597 -212892981 + L2 LINE L2 3214 3312 -1 206 362 43 0 chr3 14631624 14631718 -212892860 + MIR SINE MIR 49 146 -116 851 186 162 25 chr3 14631976 14632180 -212892398 - AluJo SINE Alu -5 307 76 434 155 10 0 chr3 14632180 14632277 -212892301 + (TG)n Simple_repeat Simple_repeat 2 99 0 434 88 0 0 chr3 14632284 14632341 -212892237 - FLAM SINE Alu -36 107 51 648 154 19 0 chr3 14632378 14632482 -212892096 - FLAM_C SINE Alu -36 107 2 547 159 7 80 chr3 14632484 14632605 -212891973 + LTR37A LTR ERV1 247 358 -68 1771 149 45 0 chr3 14632605 14632894 -212891684 - AluSx SINE Alu -10 302 1 547 159 7 80 chr3 14632894 14632910 -212891668 + LTR37A LTR ERV1 358 374 -52 471 114 0 0 chr3 14633516 14633586 -212890992 + L1MB7 LINE L1 6063 6132 -52 317 115 0 0 chr3 14633868 14633920 -212890658 + Alu SINE Alu 249 300 -2 827 143 8 0 chr3 14634132 14634258 -212890320 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 14634333 14634361 -212890217 + AT_rich Low_complexity Low_complexity 1 28 0 1650 121 3 112 chr3 14634582 14634921 -212889657 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 14634924 14635055 -212889523 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 14635098 14635122 -212889456 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 14635449 14635637 -212888941 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 14636467 14636592 -212887986 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 14636602 14636758 -212887820 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 14636824 14637092 -212887486 - L2 LINE L2 -38 3234 2924 196 315 11 22 chr3 14637198 14637287 -212887291 + L2 LINE L2 2949 3036 -236 2426 60 0 3 chr3 14637288 14637590 -212886988 + AluY SINE Alu 1 301 -10 953 78 39 0 chr3 14637601 14637729 -212886849 + AluSq/x SINE Alu 1 133 -180 481 233 0 0 chr3 14637887 14637973 -212886605 + L2 LINE L2 3154 3239 -33 231 337 87 0 chr3 14638525 14638617 -212885961 + MIR SINE MIR 45 144 -64 1498 167 17 38 chr3 14638882 14639175 -212885403 + AluJo SINE Alu 1 287 -25 1292 111 0 115 chr3 14639252 14639442 -212885136 - L1PB1 LINE L1 -2 6149 5939 207 0 0 0 chr3 14639442 14639465 -212885113 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1963 91 7 14 chr3 14639465 14639750 -212884828 - AluSx SINE Alu -29 283 1 2132 113 0 0 chr3 14639760 14640060 -212884518 - AluSq SINE Alu -13 300 1 1292 111 0 115 chr3 14640060 14640110 -212884468 - L1PB1 LINE L1 -171 5980 5926 2137 99 3 3 chr3 14640281 14640573 -212884005 + AluSx SINE Alu 1 292 -20 2441 57 3 0 chr3 14640884 14641184 -212883394 + AluY SINE Alu 1 301 -10 469 245 29 103 chr3 14641391 14641514 -212883064 - MER5A DNA MER1_type 0 189 85 2102 94 7 0 chr3 14641514 14641801 -212882777 - AluSx SINE Alu -17 295 7 469 245 29 103 chr3 14641801 14641881 -212882697 - MER5A DNA MER1_type -104 85 1 1226 181 3 84 chr3 14641948 14642268 -212882310 - AluJo SINE Alu -18 294 1 1773 130 40 10 chr3 14642791 14643090 -212881488 + AluSx SINE Alu 1 308 -4 28 29 0 0 chr3 14643143 14643178 -212881400 + AT_rich Low_complexity Low_complexity 1 35 0 2513 56 0 0 chr3 14643361 14643663 -212880915 - AluY SINE Alu -9 302 1 1736 155 3 13 chr3 14643709 14644012 -212880566 + AluSc SINE Alu 1 300 -9 28 48 0 0 chr3 14644310 14644352 -212880226 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 14645546 14645568 -212879010 + AT_rich Low_complexity Low_complexity 1 22 0 927 115 7 14 chr3 14645749 14645897 -212878681 - AluSg/x SINE Alu -7 303 157 757 168 0 24 chr3 14646220 14646345 -212878233 + FLAM_C SINE Alu 2 123 -20 1345 174 0 38 chr3 14646521 14646785 -212877793 - AluJb SINE Alu -31 281 28 424 275 76 65 chr3 14646819 14647201 -212877377 + L1ME LINE L1 5297 5682 -439 680 130 30 0 chr3 14647218 14647318 -212877260 + U6 snRNA snRNA 1 103 -4 274 70 70 0 chr3 14647473 14647516 -212877062 - MADE1 DNA Mariner 0 80 35 2055 109 0 3 chr3 14647671 14647954 -212876624 - AluSx SINE Alu -26 286 5 2221 103 0 3 chr3 14648246 14648547 -212876031 - AluSx SINE Alu -12 300 1 257 311 0 0 chr3 14648804 14648865 -212875713 + L2 LINE L2 3211 3271 -1 24 0 0 0 chr3 14649224 14649248 -212875330 + AT_rich Low_complexity Low_complexity 1 24 0 2302 72 7 7 chr3 14649696 14650002 -212874576 - AluY SINE Alu -5 306 1 305 170 0 19 chr3 14650130 14650183 -212874395 + MER5B DNA MER1_type 5 56 -122 1703 162 3 23 chr3 14650582 14650891 -212873687 + AluJb SINE Alu 5 307 -5 310 229 107 15 chr3 14651008 14651139 -212873439 + L1ME4a LINE L1 5976 6118 -3 1986 114 3 0 chr3 14651572 14651862 -212872716 - AluSg SINE Alu -19 291 1 374 89 0 18 chr3 14654052 14654265 -212870313 + AluSx SINE Alu 1 292 -8 210 259 0 0 chr3 14654711 14654769 -212869809 + T-rich Low_complexity Low_complexity 1 58 0 275 119 24 0 chr3 14654769 14654811 -212869767 - LTR23 LTR ERV1 -78 359 317 2229 107 0 0 chr3 14654824 14655134 -212869444 - AluY SINE Alu 0 311 2 2140 115 0 0 chr3 14655263 14655567 -212869011 - AluSg SINE Alu -6 304 1 2273 83 0 3 chr3 14655720 14656020 -212868558 - AluY SINE Alu -12 299 1 597 255 75 64 chr3 14656352 14656619 -212867959 - L3 LINE CR1 -682 895 626 187 289 0 19 chr3 14657811 14657863 -212866715 + MIR SINE MIR 20 70 -138 2077 113 0 3 chr3 14657970 14658272 -212866306 - AluSq SINE Alu -12 301 1 324 370 55 28 chr3 14659462 14659877 -212864701 - L2 LINE L2 -188 3084 2661 2348 70 3 0 chr3 14660012 14660311 -212864267 + AluY SINE Alu 3 302 -9 1997 111 17 0 chr3 14660472 14660760 -212863818 + AluSp SINE Alu 1 293 -20 2759 10 0 3 chr3 14660766 14661078 -212863500 + AluYa5 SINE Alu 1 311 0 310 327 175 6 chr3 14661078 14661393 -212863185 - L2 LINE L2 -1317 1997 1630 21 0 0 0 chr3 14661394 14661415 -212863163 + AT_rich Low_complexity Low_complexity 1 21 0 311 183 158 58 chr3 14661416 14661536 -212863042 - MIR SINE MIR -56 206 75 1247 104 0 6 chr3 14662186 14662359 -212862219 - AluSg/x SINE Alu -17 293 122 7465 18 1 0 chr3 14662359 14663233 -212861345 + L1PA3 LINE L1 5310 6184 0 200 213 85 0 chr3 14663366 14663413 -212861165 - L2 LINE L2 -1 3271 3221 1669 145 0 4 chr3 14663614 14663899 -212860679 + AluJb SINE Alu 23 306 0 534 103 0 0 chr3 14664000 14664078 -212860500 + (TA)n Simple_repeat Simple_repeat 2 79 0 2497 55 0 0 chr3 14664078 14664387 -212860191 - AluY SINE Alu -2 309 1 23 0 0 0 chr3 14664445 14664468 -212860110 + AT_rich Low_complexity Low_complexity 1 23 0 230 313 12 0 chr3 14664662 14664745 -212859833 - L1MC/D LINE L1 -1911 5897 5814 3698 147 17 44 chr3 14664751 14665135 -212859443 - L1MB4 LINE L1 -1 6179 5786 2355 69 0 0 chr3 14665135 14665426 -212859152 + AluY SINE Alu 1 291 -20 225 0 0 0 chr3 14665430 14665455 -212859123 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3698 147 17 44 chr3 14665455 14665468 -212859110 - L1MB4 LINE L1 -397 5783 5771 2087 106 0 0 chr3 14665468 14665783 -212858795 - AluSx SINE Alu 0 315 1 3698 147 17 44 chr3 14665783 14666100 -212858478 - L1MB4 LINE L1 -409 5771 5478 36 0 0 0 chr3 14666114 14666150 -212858428 + AT_rich Low_complexity Low_complexity 1 36 0 852 194 0 12 chr3 14666150 14666310 -212858268 - FRAM SINE Alu -26 150 1 1172 136 58 43 chr3 14666311 14666457 -212858121 - L1MB4 LINE L1 -706 5474 5332 1564 201 0 3 chr3 14666457 14666760 -212857818 - AluJb SINE Alu -10 302 1 1172 136 58 43 chr3 14666760 14666957 -212857621 - L1MB4 LINE L1 -848 5332 5123 2166 123 0 0 chr3 14666958 14667267 -212857311 - AluSc SINE Alu 0 309 1 2491 205 57 29 chr3 14667957 14668610 -212855968 - L1MB4 LINE L1 -1007 5139 4469 1664 204 0 0 chr3 14668610 14668918 -212855660 - AluJb SINE Alu -4 308 1 524 272 98 53 chr3 14669023 14669127 -212855451 - MIR SINE MIR 0 262 164 2188 73 7 13 chr3 14669127 14669427 -212855151 + AluY SINE Alu 1 298 -13 524 272 98 53 chr3 14669427 14669493 -212855085 - MIR SINE MIR -98 164 102 2128 102 14 0 chr3 14669493 14669787 -212854791 + AluSq SINE Alu 1 298 -15 524 272 98 53 chr3 14669787 14669861 -212854717 - MIR SINE MIR -160 102 6 2136 119 128 44 chr3 14670573 14670986 -212853592 + MER83 LTR ERV1 1 448 0 697 281 95 18 chr3 14671025 14671246 -212853332 + MIR SINE MIR 15 252 -10 2151 23 4 12 chr3 14671481 14671740 -212852838 + L1PA4 LINE L1 5899 6155 0 2087 110 7 3 chr3 14671837 14672146 -212852432 - AluSx SINE Alu -2 310 1 1564 116 86 60 chr3 14672304 14672606 -212851972 - AluSx SINE Alu -2 310 1 1997 139 0 7 chr3 14672757 14673059 -212851519 + AluSx SINE Alu 1 300 -12 228 322 54 47 chr3 14673136 14673285 -212851293 - L2 LINE L2 -567 2747 2598 512 301 44 22 chr3 14673738 14673921 -212850657 - MIR SINE MIR -1 261 75 1477 108 0 0 chr3 14674700 14674903 -212849675 + AluSg/x SINE Alu 88 290 -20 181 283 75 57 chr3 14676126 14676232 -212848346 - MER5C DNA MER1_type -213 111 4 * 204 211 158 0 chr3 14676176 14676233 -212848345 - MIR SINE MIR -130 132 67 2118 117 0 0 chr3 14676329 14676629 -212847949 - AluSx SINE Alu -12 300 1 8487 122 49 53 chr3 14676989 14677118 -212847460 + L1MA3 LINE L1 3653 3781 -2524 2163 99 0 10 chr3 14677118 14677421 -212847157 + AluSx SINE Alu 1 300 -12 8487 122 49 53 chr3 14677421 14679064 -212845514 + L1MA3 LINE L1 3781 5428 -877 5873 65 33 5 chr3 14679064 14679892 -212844686 + SVA Other Other 18 868 -518 8487 122 49 53 chr3 14679892 14679941 -212844637 + L1MA3 LINE L1 5428 5476 -829 6584 58 6 70 chr3 14679941 14680963 -212843615 + SVA Other Other 430 1386 0 8487 122 49 53 chr3 14680963 14681579 -212842999 + L1MA3 LINE L1 5476 6067 -238 1985 134 0 0 chr3 14681579 14681877 -212842701 - AluSx SINE Alu -14 298 1 8487 122 49 53 chr3 14681877 14682088 -212842490 + L1MA3 LINE L1 6067 6277 -28 2040 117 0 3 chr3 14682099 14682397 -212842181 - AluSx SINE Alu -15 297 1 574 252 8 8 chr3 14683624 14683751 -212840827 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14683755 14684061 -212840517 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14684734 14684754 -212839824 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14684988 14685301 -212839277 - AluY SINE Alu 0 311 1 1826 139 10 10 chr3 14685546 14685849 -212838729 - AluSx SINE Alu -9 303 1 431 217 67 21 chr3 14685876 14686068 -212838510 - MLT1H LTR MaLR -307 242 20 192 314 157 33 chr3 14686810 14686931 -212837647 + L2 LINE L2 3136 3271 -1 1828 106 50 14 chr3 14687308 14687618 -212836960 - AluSq SINE Alu 0 313 1 517 259 113 8 chr3 14687872 14688111 -212836467 - L1ME4a LINE L1 -38 6083 5820 1613 176 20 7 chr3 14688224 14688519 -212836059 + AluJo SINE Alu 6 304 -8 2393 51 3 13 chr3 14688522 14688836 -212835742 + AluY SINE Alu 1 311 0 2091 145 69 57 chr3 14688837 14689184 -212835394 - MER65A LTR ERV1 -33 412 58 1877 104 46 7 chr3 14689184 14689464 -212835114 - AluSx SINE Alu -21 291 1 2091 145 69 57 chr3 14689464 14689523 -212835055 - MER65A LTR ERV1 -387 58 1 331 273 244 13 chr3 14690237 14690545 -212834033 + L2 LINE L2 2926 3304 -9 424 233 158 14 chr3 14691228 14691374 -212833204 - L2 LINE L2 -16 3297 3131 262 154 0 0 chr3 14691377 14691416 -212833162 + AluJo/FLAM SINE Alu 87 125 -177 2201 77 0 24 chr3 14691417 14691714 -212832864 - AluSc SINE Alu -19 290 1 1915 135 13 7 chr3 14691832 14692136 -212832442 - AluJb SINE Alu -6 306 1 2054 112 7 3 chr3 14692372 14692676 -212831902 - AluSx SINE Alu -7 305 1 1856 137 4 0 chr3 14692952 14693230 -212831348 - AluJb SINE Alu -15 297 19 195 279 0 0 chr3 14693303 14693346 -212831232 + MIR SINE MIR 193 235 -27 1869 132 11 0 chr3 14693379 14693666 -212830912 + AluSx SINE Alu 1 290 -22 1371 65 0 0 chr3 14693848 14694016 -212830562 - AluSg/x SINE Alu -11 301 134 2064 134 0 0 chr3 14694016 14694314 -212830264 - AluSx SINE Alu -14 298 1 1053 159 43 19 chr3 14694931 14695139 -212829439 + L1MB7 LINE L1 5925 6137 -47 214 281 0 53 chr3 14695282 14695339 -212829239 + MIR3 SINE MIR 114 167 -41 773 186 117 0 chr3 14695556 14695701 -212828877 - AluSp SINE Alu -17 296 135 2005 79 6 103 chr3 14695702 14696042 -212828536 - AluSx SINE Alu -5 307 1 186 291 38 63 chr3 14696123 14696202 -212828376 - L3b LINE CR1 -80 1503 1427 1531 153 0 62 chr3 14696248 14696555 -212828023 + AluJo SINE Alu 6 293 -19 2029 131 0 3 chr3 14697249 14697555 -212827023 - AluSx SINE Alu -6 306 2 2197 115 0 0 chr3 14697960 14698264 -212826314 + AluSx SINE Alu 1 304 -8 195 100 0 0 chr3 14699345 14699375 -212825203 + (TTTCC)n Simple_repeat Simple_repeat 2 31 0 426 103 0 15 chr3 14699800 14699868 -212824710 + Alu SINE Alu 2 68 -241 * 442 253 0 11 chr3 14699865 14699956 -212824622 - AluJ/FLAM SINE Alu -221 91 2 332 276 131 14 chr3 14700171 14700316 -212824262 - MIR SINE MIR -55 207 46 459 225 0 42 chr3 14700856 14700976 -212823602 - L2 LINE L2 -19 3294 3180 1586 214 112 47 chr3 14701121 14701554 -212823024 + MLT1D LTR MaLR 1 469 -36 4351 149 75 92 chr3 14701554 14702643 -212821935 + MER11C LTR ERVK 1 1071 0 1586 214 112 47 chr3 14702643 14702681 -212821897 + MLT1D LTR MaLR 469 503 -2 446 167 205 1 chr3 14702685 14702833 -212821745 - L2 LINE L2 -313 3000 2827 1310 146 77 16 chr3 14702919 14703063 -212821515 + L1MB8 LINE L1 5347 5514 -664 2244 106 3 0 chr3 14703063 14703374 -212821204 + AluSx SINE Alu 1 312 0 1310 146 77 16 chr3 14703374 14703475 -212821103 + L1MB8 LINE L1 5514 5607 -571 1289 195 33 0 chr3 14703476 14703717 -212820861 + AluJb SINE Alu 1 249 -63 2065 167 109 13 chr3 14703717 14703858 -212820720 + L1MB8 LINE L1 5679 5805 -373 2290 83 0 3 chr3 14703858 14704158 -212820420 + AluY SINE Alu 1 299 -12 2065 167 109 13 chr3 14704158 14704464 -212820114 + L1MB8 LINE L1 5805 6169 -9 2063 113 10 0 chr3 14704631 14704932 -212819646 + AluSx SINE Alu 3 306 -6 499 172 90 46 chr3 14704976 14705128 -212819450 - MIR SINE MIR -51 211 43 599 114 0 0 chr3 14705461 14705540 -212819038 + AluSq SINE Alu 2 80 -233 2467 46 7 3 chr3 14705544 14705851 -212818727 + AluY SINE Alu 1 308 -3 1558 81 5 5 chr3 14705852 14706062 -212818516 + AluSq SINE Alu 76 285 -28 203 0 37 0 chr3 14706113 14706140 -212818438 + (CA)n Simple_repeat Simple_repeat 2 29 0 482 267 12 121 chr3 14706906 14706994 -212817584 - L2 LINE L2 -2 3311 3215 2291 85 3 0 chr3 14706994 14707299 -212817279 + AluSg SINE Alu 1 306 -4 482 267 12 121 chr3 14707299 14707532 -212817046 - L2 LINE L2 -98 3215 3025 424 233 158 14 chr3 14707527 14707673 -212816905 - L2 LINE L2 -16 3297 3131 * 1152 140 36 59 chr3 14707676 14707716 -212816862 + AluJo SINE Alu 87 126 -186 2280 71 0 20 chr3 14707716 14708013 -212816565 - AluSg SINE Alu -19 291 1 1152 140 36 59 chr3 14708013 14708194 -212816384 + AluJo SINE Alu 126 303 -9 823 157 30 139 chr3 14708343 14708675 -212815903 + AluSx SINE Alu 1 296 -6 350 115 16 0 chr3 14708705 14708766 -212815812 + (TA)n Simple_repeat Simple_repeat 1 62 0 760 215 101 0 chr3 14708767 14708925 -212815653 - MIR SINE MIR -3 259 86 290 294 125 22 chr3 14709014 14709150 -212815428 - MIR SINE MIR -52 210 61 430 304 22 77 chr3 14709177 14709450 -212815128 + MIR SINE MIR 5 262 0 449 226 182 17 chr3 14710269 14710392 -212814186 - MIR SINE MIR -50 212 111 2335 171 88 11 chr3 14710392 14710836 -212813742 + MER66A LTR ERV1 1 478 0 449 226 182 17 chr3 14710836 14710893 -212813685 - MIR SINE MIR -151 111 2 751 237 6 17 chr3 14711064 14711241 -212813337 - MER5B DNA MER1_type 0 178 4 2091 126 0 7 chr3 14711265 14711575 -212813003 + AluSx SINE Alu 1 308 -4 2261 98 3 0 chr3 14711640 14711947 -212812631 - AluSp SINE Alu -5 308 1 2218 91 0 3 chr3 14712121 14712417 -212812161 - AluSc SINE Alu -14 295 1 22 35 0 0 chr3 14712458 14712487 -212812091 + AT_rich Low_complexity Low_complexity 1 29 0 438 251 131 0 chr3 14712546 14712737 -212811841 - L1ME LINE L1 -303 5818 5603 710 139 42 69 chr3 14712750 14712870 -212811708 + FLAM_C SINE Alu 2 124 -83 2110 112 7 0 chr3 14712870 14713165 -212811413 + AluSp SINE Alu 1 297 -16 2444 54 0 6 chr3 14713168 14713481 -212811097 + AluY SINE Alu 1 311 0 710 139 42 69 chr3 14713481 14713566 -212811012 + FLAM_C SINE Alu 126 207 0 755 139 14 83 chr3 14713567 14713711 -212810867 + AluJo SINE Alu 2 135 -177 2010 119 20 3 chr3 14713713 14714016 -212810562 + AluSx SINE Alu 1 308 -4 780 135 23 23 chr3 14714084 14714217 -212810361 - FLAM_C SINE Alu 0 133 1 1549 132 115 65 chr3 14714484 14714609 -212809969 + THE1C LTR MaLR 1 118 -257 2300 93 0 0 chr3 14714609 14714911 -212809667 - AluSg1 SINE Alu -7 302 1 1549 132 115 65 chr3 14714911 14715141 -212809437 + THE1C LTR MaLR 118 374 -1 927 133 21 0 chr3 14715750 14715893 -212808685 - MER46B DNA MER2_type 0 236 91 1646 178 75 42 chr3 14715893 14716253 -212808325 - MER21A LTR ERV1 0 931 560 350 58 0 39 chr3 14716247 14716299 -212808279 - AluJo SINE Alu -8 294 245 * 813 212 41 0 chr3 14716301 14716471 -212808107 - AluJo SINE Alu -135 177 1 1038 137 71 18 chr3 14716471 14716712 -212807866 - MER21B LTR ERV1 -376 487 214 899 141 7 0 chr3 14716720 14716862 -212807716 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 14716862 14716924 -212807654 - MER21A LTR ERV1 -863 68 3 770 186 170 0 chr3 14716924 14717112 -212807466 - MER46B DNA MER2_type -141 95 1 2249 99 7 0 chr3 14717304 14717606 -212806972 - AluSq SINE Alu -9 304 1 207 0 0 0 chr3 14717994 14718017 -212806561 + (A)n Simple_repeat Simple_repeat 1 23 0 1795 109 75 31 chr3 14718160 14718317 -212806261 - AluSq SINE Alu -7 306 157 2232 82 0 7 chr3 14718317 14718623 -212805955 - AluY SINE Alu -6 305 2 1795 109 75 31 chr3 14718623 14718758 -212805820 - AluSq SINE Alu -156 157 1 2062 120 0 10 chr3 14718829 14719129 -212805449 + AluSc SINE Alu 1 297 -12 228 322 54 47 chr3 14719206 14719355 -212805223 - L2 LINE L2 -567 2747 2598 482 301 44 22 chr3 14719808 14719991 -212804587 - MIR SINE MIR -1 261 75 1477 108 0 0 chr3 14720770 14720973 -212803605 + AluSg/x SINE Alu 90 292 -20 181 283 75 57 chr3 14722196 14722302 -212802276 - MER5C DNA MER1_type -213 111 4 * 204 211 158 0 chr3 14722246 14722303 -212802275 - MIR SINE MIR -130 132 67 2118 117 0 0 chr3 14722399 14722699 -212801879 - AluSx SINE Alu -12 300 1 8487 144 62 29 chr3 14723059 14723188 -212801390 + L1MA3 LINE L1 3653 3776 -2433 2163 99 0 10 chr3 14723188 14723491 -212801087 + AluSx SINE Alu 1 300 -12 8487 144 62 29 chr3 14723491 14725134 -212799444 + L1MA3 LINE L1 3776 5466 -743 1828 37 37 0 chr3 14725134 14725377 -212799201 + SVA Other Other 18 269 -1117 6313 47 18 24 chr3 14726291 14727134 -212797444 + SVA Other Other 549 1386 0 5699 82 25 22 chr3 14727147 14727750 -212796828 + L1MA3 LINE L1 5461 6068 -237 1985 134 0 0 chr3 14727750 14728048 -212796530 - AluSx SINE Alu -14 298 1 5699 82 25 22 chr3 14728048 14728259 -212796319 + L1MA3 LINE L1 6068 6277 -28 2074 114 0 3 chr3 14728269 14728568 -212796010 - AluSx SINE Alu -14 298 1 574 252 8 8 chr3 14729795 14729922 -212794656 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14729926 14730232 -212794346 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14730905 14730925 -212793653 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14731159 14731472 -212793106 - AluY SINE Alu 0 311 1 2342 76 0 3 chr3 14731717 14732020 -212792558 - AluYa5 SINE Alu -9 302 1 943 155 0 42 chr3 14732537 14732705 -212791873 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14732705 14732732 -212791846 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1513 125 4 93 chr3 14732733 14733012 -212791566 - AluSx SINE Alu -30 282 29 1160 182 4 21 chr3 14733012 14733248 -212791330 + AluJo SINE Alu 77 308 -4 1908 128 10 3 chr3 14733265 14733554 -212791024 + AluSx SINE Alu 2 292 -20 819 131 0 51 chr3 14733592 14733729 -212790849 + FLAM_C SINE Alu 2 131 -2 1307 184 4 16 chr3 14733739 14733989 -212790589 + AluJo SINE Alu 3 249 -63 2331 53 0 0 chr3 14734338 14734643 -212789935 - AluY SINE Alu 0 305 1 1441 147 105 11 chr3 14734651 14734917 -212789661 - AluJo SINE Alu -21 291 1 1772 102 98 0 chr3 14735014 14735278 -212789300 - AluSx SINE Alu -22 290 1 653 261 101 20 chr3 14736037 14736236 -212788342 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 14736305 14736403 -212788175 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 271 219 78 0 chr3 14736467 14736531 -212788047 - L2 LINE L2 -51 3221 3153 466 174 81 128 chr3 14736628 14736777 -212787801 + MER103 DNA DNA 24 165 -1 2170 117 0 0 chr3 14737145 14737452 -212787126 + AluSx SINE Alu 1 307 -5 285 196 65 33 chr3 14737474 14737566 -212787012 + MIR SINE MIR 60 154 -108 785 144 7 0 chr3 14737759 14737905 -212786673 + (TCCA)n Simple_repeat Simple_repeat 4 150 0 484 222 95 16 chr3 14738390 14738516 -212786062 - MIR SINE MIR -116 146 11 2258 85 0 3 chr3 14738790 14739096 -212785482 - AluY SINE Alu -6 305 1 222 305 12 0 chr3 14739136 14739218 -212785360 + (TA)n Simple_repeat Simple_repeat 2 84 0 1927 105 3 86 chr3 14739734 14740059 -212784519 + AluSx SINE Alu 1 298 -14 2126 110 0 7 chr3 14740259 14740558 -212784020 + AluSx SINE Alu 1 297 -15 265 313 114 30 chr3 14740570 14740736 -212783842 - MIR SINE MIR -35 227 48 2313 56 0 3 chr3 14740760 14741046 -212783532 - AluY SINE Alu -5 306 22 343 270 63 48 chr3 14741096 14741222 -212783356 - MIR SINE MIR -88 174 47 27 0 0 0 chr3 14741324 14741351 -212783227 + AT_rich Low_complexity Low_complexity 1 27 0 247 353 85 0 chr3 14741872 14742025 -212782553 + L1ME LINE L1 5534 5699 -422 2123 92 0 26 chr3 14742035 14742339 -212782239 - AluSx SINE Alu -16 296 1 827 206 0 0 chr3 14742371 14742512 -212782066 - FRAM SINE Alu -35 141 1 1873 188 101 3 chr3 14742516 14742894 -212781684 - L1ME1 LINE L1 -62 6104 5690 2050 106 10 0 chr3 14742917 14743210 -212781368 + AluSx SINE Alu 1 296 -16 341 250 32 90 chr3 14743335 14743403 -212781175 + MIR SINE MIR 114 184 -78 849 165 0 88 chr3 14743403 14743585 -212780993 - FRAM SINE Alu 0 166 1 341 250 32 90 chr3 14743585 14743672 -212780906 + MIR SINE MIR 184 260 -2 934 187 24 57 chr3 14743687 14743840 -212780738 - AluJo SINE Alu -27 285 139 1956 131 3 13 chr3 14743840 14744154 -212780424 - AluSx SINE Alu -1 311 1 934 187 24 57 chr3 14744154 14744209 -212780369 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 14744242 14744271 -212780307 + AT_rich Low_complexity Low_complexity 1 29 0 1879 147 0 3 chr3 14744399 14744691 -212779887 - AluSx SINE Alu -21 291 1 715 187 8 0 chr3 14744788 14744911 -212779667 - FLAM_C SINE Alu -17 126 3 1360 137 26 13 chr3 14745276 14745509 -212779069 + AluJb SINE Alu 66 301 -11 2228 74 0 17 chr3 14745839 14746138 -212778440 - AluSp SINE Alu -19 294 1 2047 103 0 41 chr3 14746314 14746633 -212777945 + AluSq SINE Alu 1 306 -7 384 313 27 34 chr3 14746675 14746822 -212777756 + MIR SINE MIR 98 243 -19 2296 65 3 19 chr3 14747105 14747415 -212777163 - AluSp SINE Alu -8 305 1 2130 122 0 3 chr3 14747543 14747846 -212776732 - AluSx SINE Alu -10 302 1 2346 82 0 0 chr3 14748373 14748676 -212775902 - AluSx SINE Alu -9 303 1 505 215 237 30 chr3 14748677 14748804 -212775774 - MLT1H LTR MaLR -61 488 389 1865 157 3 3 chr3 14748804 14749116 -212775462 - AluJo SINE Alu 0 312 1 505 215 237 30 chr3 14749116 14749335 -212775243 - MLT1H LTR MaLR -160 389 20 192 314 157 33 chr3 14750077 14750198 -212774380 + L2 LINE L2 3136 3271 -1 1828 106 50 14 chr3 14750575 14750885 -212773693 - AluSq SINE Alu 0 313 1 517 259 113 8 chr3 14751139 14751378 -212773200 - L1ME4a LINE L1 -38 6083 5820 1595 180 20 7 chr3 14751491 14751786 -212772792 + AluJo SINE Alu 6 304 -8 2216 97 0 7 chr3 14751789 14752088 -212772490 + AluSx SINE Alu 1 297 -15 1976 130 3 0 chr3 14752185 14752493 -212772085 - AluSg SINE Alu -1 309 1 1837 119 75 10 chr3 14752564 14752699 -212771879 + AluSq SINE Alu 1 126 -187 2232 82 0 7 chr3 14752699 14753005 -212771573 + AluY SINE Alu 2 305 -6 1837 119 75 10 chr3 14753005 14753162 -212771416 + AluSq SINE Alu 126 312 -1 207 0 0 0 chr3 14753305 14753328 -212771250 + (T)n Simple_repeat Simple_repeat 1 23 0 2241 100 7 0 chr3 14753716 14754017 -212770561 + AluSq SINE Alu 1 303 -10 770 186 170 0 chr3 14754211 14754399 -212770179 + MER46B DNA MER2_type 1 95 -141 346 113 65 0 chr3 14754399 14754461 -212770117 + MER21B LTR ERV1 3 68 -863 899 141 7 0 chr3 14754461 14754603 -212769975 - AluJo SINE Alu -150 162 20 1038 137 71 18 chr3 14754611 14754852 -212769726 + MER21B LTR ERV1 214 487 -376 350 176 32 12 chr3 14754852 14755076 -212769502 + AluJo SINE Alu 1 294 -8 * 1646 178 75 42 chr3 14755070 14755430 -212769148 + MER21A LTR ERV1 560 931 0 927 133 21 0 chr3 14755430 14755573 -212769005 + MER46B DNA MER2_type 91 236 0 1549 132 115 65 chr3 14756182 14756412 -212768166 - THE1C LTR MaLR -1 374 118 2300 93 0 0 chr3 14756412 14756714 -212767864 + AluSg1 SINE Alu 1 302 -7 1549 132 115 65 chr3 14756714 14756839 -212767739 - THE1C LTR MaLR -257 118 1 780 135 23 23 chr3 14757106 14757239 -212767339 + FLAM_C SINE Alu 1 133 0 2010 119 20 3 chr3 14757306 14757609 -212766969 - AluSx SINE Alu -4 308 1 755 139 14 83 chr3 14757611 14757755 -212766823 - AluJo SINE Alu -177 135 2 222 219 0 16 chr3 14757756 14757820 -212766758 + T-rich Low_complexity Low_complexity 1 63 0 709 139 42 69 chr3 14757822 14757841 -212766737 - FLAM_C SINE Alu -171 141 123 2435 55 0 6 chr3 14757841 14758153 -212766425 - AluY SINE Alu -1 310 1 2138 108 7 0 chr3 14758156 14758451 -212766127 - AluSp SINE Alu -16 297 1 709 139 42 69 chr3 14758451 14758571 -212766007 - FLAM_C SINE Alu -191 121 2 438 251 131 0 chr3 14758584 14758775 -212765803 + L1ME LINE L1 5603 5818 -303 22 35 0 0 chr3 14758834 14758863 -212765715 + AT_rich Low_complexity Low_complexity 1 29 0 2210 92 0 3 chr3 14758904 14759199 -212765379 + AluSc SINE Alu 1 294 -15 2274 94 3 0 chr3 14759373 14759680 -212764898 + AluSp SINE Alu 1 308 -5 2099 125 0 6 chr3 14759745 14760056 -212764522 - AluSx SINE Alu -3 309 1 751 237 6 17 chr3 14760080 14760257 -212764321 + MER5B DNA MER1_type 4 178 0 449 226 182 17 chr3 14760428 14760485 -212764093 + MIR SINE MIR 2 48 -214 2336 171 88 11 chr3 14760485 14760929 -212763649 - MER66A LTR ERV1 0 478 1 449 226 182 17 chr3 14760929 14761052 -212763526 + MIR SINE MIR 48 212 -50 449 300 22 77 chr3 14761871 14762144 -212762434 - MIR SINE MIR 0 262 5 286 294 125 22 chr3 14762171 14762307 -212762271 + MIR SINE MIR 61 210 -52 752 215 101 0 chr3 14762396 14762554 -212762024 + MIR SINE MIR 86 259 -3 368 111 16 0 chr3 14762555 14762618 -212761960 + (TA)n Simple_repeat Simple_repeat 1 64 0 1855 141 39 0 chr3 14762650 14762933 -212761645 - AluJo SINE Alu -18 294 1 1275 147 35 56 chr3 14763073 14763263 -212761315 - AluJo SINE Alu 0 312 126 2432 67 0 20 chr3 14763263 14763560 -212761018 + AluSg SINE Alu 1 291 -19 1275 147 35 56 chr3 14763560 14763600 -212760978 - AluJo SINE Alu -186 126 87 424 233 158 14 chr3 14763603 14763749 -212760829 + L2 LINE L2 3131 3297 -16 * 468 274 12 118 chr3 14763744 14763976 -212760602 + L2 LINE L2 3025 3215 -98 2376 92 3 0 chr3 14763976 14764279 -212760299 - AluSg SINE Alu -6 304 1 468 274 12 118 chr3 14764279 14764367 -212760211 + L2 LINE L2 3215 3311 -2 203 0 37 0 chr3 14765133 14765160 -212759418 + (TG)n Simple_repeat Simple_repeat 2 29 0 1661 81 5 5 chr3 14765211 14765421 -212759157 - AluSq SINE Alu -28 285 76 2592 46 7 3 chr3 14765422 14765727 -212758851 - AluY SINE Alu -5 306 1 614 114 0 0 chr3 14765731 14765810 -212758768 - AluSq SINE Alu -233 80 2 497 172 90 46 chr3 14766143 14766295 -212758283 + MIR SINE MIR 43 211 -51 2211 113 10 0 chr3 14766339 14766640 -212757938 - AluSx SINE Alu -6 306 3 1957 174 107 11 chr3 14766807 14767113 -212757465 - L1MB8 LINE L1 -9 6169 5805 2406 87 0 3 chr3 14767113 14767413 -212757165 - AluY SINE Alu -12 299 1 1957 174 107 11 chr3 14767413 14767554 -212757024 - L1MB8 LINE L1 -373 5805 5679 1411 195 33 0 chr3 14767554 14767795 -212756783 - AluJb SINE Alu -63 249 1 1236 146 77 16 chr3 14767796 14767897 -212756681 - L1MB8 LINE L1 -571 5607 5514 2411 103 3 0 chr3 14767897 14768208 -212756370 - AluSx SINE Alu 0 312 1 1236 146 77 16 chr3 14768208 14768352 -212756226 - L1MB8 LINE L1 -664 5514 5347 461 167 205 1 chr3 14768438 14768586 -212755992 + L2 LINE L2 2827 3000 -313 1618 211 113 43 chr3 14768590 14768628 -212755950 - MLT1D LTR MaLR -2 503 469 4425 148 75 92 chr3 14768628 14769717 -212754861 - MER11C LTR ERVK 0 1071 1 1618 211 113 43 chr3 14769717 14770148 -212754430 - MLT1D LTR MaLR -36 469 1 455 222 24 32 chr3 14770292 14770418 -212754160 + L2 LINE L2 3138 3262 -10 344 276 131 14 chr3 14770953 14771098 -212753480 + MIR SINE MIR 46 207 -55 582 189 0 0 chr3 14771313 14771403 -212753175 + AluJ/FLAM SINE Alu 2 91 -221 519 90 0 0 chr3 14771400 14771467 -212753111 - Alu SINE Alu -243 68 2 * 1414 113 0 0 chr3 14771468 14771654 -212752924 - AluSg/x SINE Alu -16 296 111 2153 112 13 16 chr3 14771654 14771787 -212752791 + AluSq SINE Alu 1 133 -180 2442 83 10 0 chr3 14771787 14772087 -212752491 + AluY SINE Alu 1 303 -8 2153 112 13 16 chr3 14772087 14772262 -212752316 + AluSq SINE Alu 129 309 0 2311 102 7 0 chr3 14772262 14772566 -212752012 + AluSg SINE Alu 5 310 0 1224 213 8 12 chr3 14772665 14772909 -212751669 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 14773397 14773415 -212751163 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 14773415 14773719 -212750859 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 14773719 14773871 -212750707 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 14773912 14773986 -212750592 - MIR SINE MIR -64 144 64 1434 111 55 0 chr3 14774070 14774287 -212750291 + MER30 DNA MER1_type 2 230 0 2448 73 0 10 chr3 14774388 14774688 -212749890 - AluY SINE Alu -14 297 1 371 304 138 7 chr3 14775018 14775156 -212749422 - MIR SINE MIR -79 183 28 593 214 0 30 chr3 14775747 14775878 -212748700 + FLAM_A SINE Alu 1 127 -6 1343 37 0 0 chr3 14775883 14776046 -212748532 + L1PA2 LINE L1 5993 6155 0 2284 58 44 14 chr3 14776058 14776351 -212748227 + AluY SINE Alu 1 302 -9 2006 142 3 7 chr3 14776361 14776656 -212747922 + AluSx SINE Alu 1 294 -18 1399 73 0 0 chr3 14777218 14777383 -212747195 - AluSg/x SINE Alu -14 298 134 2150 137 0 3 chr3 14777383 14777682 -212746896 - AluSx SINE Alu -14 298 1 984 159 43 19 chr3 14778299 14778507 -212746071 + L1MB7 LINE L1 5925 6137 -47 212 281 0 53 chr3 14778650 14778707 -212745871 + MIR3 SINE MIR 114 167 -41 797 186 117 0 chr3 14778924 14779069 -212745509 - AluSp SINE Alu -17 296 135 2390 72 16 16 chr3 14779070 14779377 -212745201 - AluSp SINE Alu -5 308 2 1788 136 30 3 chr3 14779378 14779727 -212744851 - L1M2 LINE L1 -532 5780 5312 2044 47 4 12 chr3 14779991 14780249 -212744329 + L1PA4 LINE L1 5899 6154 -1 2256 101 10 3 chr3 14780348 14780654 -212743924 - AluY SINE Alu -3 308 1 435 62 10 82 chr3 14780830 14780868 -212743710 - L1MB3 LINE L1 0 6183 6144 1800 123 0 12 chr3 14780868 14781121 -212743457 - AluSx SINE Alu -14 298 49 435 62 10 82 chr3 14781121 14781179 -212743399 - L1MB3 LINE L1 -39 6144 6094 744 41 16 73 chr3 14781201 14781324 -212743254 + L1PA4 LINE L1 6040 6155 0 1019 159 12 114 chr3 14781338 14781583 -212742995 + AluJo SINE Alu 86 305 -7 1511 154 17 80 chr3 14781589 14781888 -212742690 - AluJo SINE Alu -30 282 3 335 377 84 0 chr3 14782154 14782321 -212742257 + L2 LINE L2 2568 2748 -566 2203 95 0 3 chr3 14782345 14782628 -212741950 + AluSg SINE Alu 18 299 -11 2426 100 0 3 chr3 14783536 14783845 -212740733 - AluSc SINE Alu 0 309 2 1280 176 10 0 chr3 14783880 14784079 -212740499 - AluJb SINE Alu -25 287 87 1934 175 0 0 chr3 14784121 14784413 -212740165 + AluJo SINE Alu 1 292 -20 313 318 17 26 chr3 14785352 14785802 -212738776 + CT-rich Low_complexity Low_complexity 1 445 0 2239 138 0 0 chr3 14786556 14786868 -212737710 + AluSx SINE Alu 1 312 0 2106 111 27 10 chr3 14786901 14787198 -212737380 + AluSx SINE Alu 1 302 -10 335 284 149 14 chr3 14787638 14787786 -212736792 + MIR SINE MIR 22 189 -73 1420 180 103 4 chr3 14787886 14788158 -212736420 + AluJo SINE Alu 1 299 -13 1255 184 67 67 chr3 14788477 14788508 -212736070 + L1MB4 LINE L1 5806 5836 -344 2636 65 0 0 chr3 14788508 14788817 -212735761 + AluSc SINE Alu 1 309 0 1950 99 78 14 chr3 14788827 14789109 -212735469 + AluSg1 SINE Alu 1 300 -9 1255 184 67 67 chr3 14789109 14789441 -212735137 + L1MB4 LINE L1 5844 6180 0 2153 122 0 3 chr3 14789548 14789843 -212734735 - AluSx SINE Alu -18 294 1 254 235 235 0 chr3 14790187 14790285 -212734293 - L2 LINE L2 -1 3312 3192 * 289 226 49 78 chr3 14790269 14790371 -212734207 + L2 LINE L2 3214 3312 -1 213 362 43 0 chr3 14790398 14790492 -212734086 + MIR SINE MIR 49 146 -116 843 196 162 25 chr3 14790750 14790954 -212733624 - AluJo SINE Alu -5 307 76 452 152 10 0 chr3 14790954 14791053 -212733525 + (TG)n Simple_repeat Simple_repeat 2 101 0 441 88 0 0 chr3 14791060 14791117 -212733461 - FLAM SINE Alu -36 107 51 665 154 19 0 chr3 14791154 14791258 -212733320 - FLAM_C SINE Alu -36 107 2 518 167 7 80 chr3 14791260 14791381 -212733197 + LTR37A LTR ERV1 247 358 -68 1916 149 45 0 chr3 14791381 14791670 -212732908 - AluSx SINE Alu -10 302 1 518 167 7 80 chr3 14791670 14791686 -212732892 + LTR37A LTR ERV1 358 374 -52 449 114 0 0 chr3 14792292 14792362 -212732216 + L1MB7 LINE L1 6063 6132 -52 303 113 0 0 chr3 14792644 14792697 -212731881 + Alu SINE Alu 249 301 -1 890 143 8 0 chr3 14792908 14793034 -212731544 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 14793109 14793137 -212731441 + AT_rich Low_complexity Low_complexity 1 28 0 1841 121 0 112 chr3 14793358 14793698 -212730880 - AluJo SINE Alu -10 302 1 301 267 99 15 chr3 14793701 14793832 -212730746 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 14793875 14793899 -212730679 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 615 277 106 2 chr3 14794226 14794445 -212730133 - MIR SINE MIR -18 244 9 366 217 26 11 chr3 14795379 14795535 -212729043 + MIR SINE MIR 3 225 -37 363 344 166 13 chr3 14795567 14795869 -212728709 - L2 LINE L2 -1 3271 2924 202 315 11 22 chr3 14795975 14796064 -212728514 + L2 LINE L2 2949 3036 -236 2442 81 0 3 chr3 14796065 14796372 -212728206 + AluY SINE Alu 1 306 -5 576 188 7 69 chr3 14796462 14796606 -212727972 + FLAM_C SINE Alu 2 136 -7 1929 148 20 3 chr3 14796610 14796913 -212727665 + AluSx SINE Alu 1 308 -4 793 135 23 23 chr3 14796980 14797113 -212727465 - FLAM_C SINE Alu 0 133 1 1571 132 115 65 chr3 14797380 14797505 -212727073 + THE1C LTR MaLR 1 118 -257 2449 93 0 0 chr3 14797505 14797807 -212726771 - AluSg1 SINE Alu -7 302 1 1571 132 115 65 chr3 14797807 14798037 -212726541 + THE1C LTR MaLR 118 374 -1 884 133 21 0 chr3 14798646 14798789 -212725789 - MER46B DNA MER2_type 0 236 91 1522 178 75 42 chr3 14798789 14799149 -212725429 - MER21A LTR ERV1 0 931 560 330 58 0 39 chr3 14799143 14799195 -212725383 - AluJo SINE Alu -8 294 245 * 896 212 41 0 chr3 14799197 14799367 -212725211 - AluJo SINE Alu -135 177 1 970 137 71 18 chr3 14799367 14799608 -212724970 - MER21B LTR ERV1 -376 487 214 976 145 7 0 chr3 14799613 14799758 -212724820 + AluJo SINE Alu 17 162 -150 328 113 65 0 chr3 14799758 14799820 -212724758 - MER21A LTR ERV1 -863 68 3 725 191 170 0 chr3 14799820 14800008 -212724570 - MER46B DNA MER2_type -141 95 1 2392 100 7 0 chr3 14800202 14800503 -212724075 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 14800891 14800914 -212723664 + (A)n Simple_repeat Simple_repeat 1 23 0 1930 122 75 14 chr3 14801057 14801214 -212723364 - AluSq SINE Alu -1 312 166 2380 82 0 7 chr3 14801214 14801520 -212723058 - AluY SINE Alu -6 305 2 1930 122 75 14 chr3 14801520 14801656 -212722922 - AluSq SINE Alu -147 166 1 2480 50 0 0 chr3 14801728 14802033 -212722545 + AluY SINE Alu 1 305 0 1432 184 4 16 chr3 14802382 14802632 -212721946 - AluJo SINE Alu -63 249 3 838 131 0 51 chr3 14802642 14802779 -212721799 - FLAM_C SINE Alu -2 131 2 2028 132 10 3 chr3 14802817 14803106 -212721472 - AluSx SINE Alu -20 292 2 597 138 21 0 chr3 14803293 14803387 -212721191 - AluY SINE Alu -214 97 2 1553 194 75 23 chr3 14803387 14803512 -212721066 + L1M3 LINE L1 4726 4843 -1303 2388 64 0 55 chr3 14803512 14803824 -212720754 - AluY SINE Alu -16 295 1 1553 194 75 23 chr3 14803824 14804084 -212720494 + L1M3 LINE L1 4843 5131 -1015 2210 101 9 28 chr3 14804764 14805081 -212719497 + AluSx SINE Alu 1 311 -1 1832 161 44 48 chr3 14805520 14805563 -212719015 + L1M3 LINE L1 5106 5148 -1032 2140 133 3 0 chr3 14805563 14805863 -212718715 + AluSc SINE Alu 1 301 -8 1832 161 44 48 chr3 14805863 14806043 -212718535 + L1M3 LINE L1 5148 5327 -853 1716 201 0 3 chr3 14806043 14806346 -212718232 + AluJb SINE Alu 1 302 -10 1832 161 44 48 chr3 14806346 14806503 -212718075 + L1M3 LINE L1 5327 5483 -697 879 208 0 0 chr3 14806503 14806662 -212717916 + FRAM SINE Alu 1 159 -7 1832 161 44 48 chr3 14806662 14807019 -212717559 + L1M3 LINE L1 5483 5796 -384 2223 113 0 0 chr3 14807020 14807343 -212717235 + AluSx SINE Alu 1 312 0 28 0 0 0 chr3 14807346 14807374 -212717204 + AT_rich Low_complexity Low_complexity 1 28 0 515 246 87 56 chr3 14807499 14807522 -212717056 + MIR SINE MIR 62 83 -179 2277 102 14 0 chr3 14807522 14807816 -212716762 - AluSq SINE Alu -15 298 1 515 246 87 56 chr3 14807816 14807882 -212716696 + MIR SINE MIR 83 145 -117 2330 73 7 13 chr3 14807882 14808182 -212716396 - AluY SINE Alu -13 298 1 515 246 87 56 chr3 14808182 14808286 -212716292 + MIR SINE MIR 145 262 0 2150 104 31 0 chr3 14808391 14808678 -212715900 + AluSx SINE Alu 1 296 -16 2449 68 7 10 chr3 14809039 14809348 -212715230 - AluY SINE Alu -3 308 1 2448 83 0 0 chr3 14809753 14810055 -212714523 + AluSx SINE Alu 2 303 -9 299 210 75 28 chr3 14810577 14810733 -212713845 - MLT1H LTR MaLR -326 223 20 192 314 157 33 chr3 14811478 14811599 -212712979 + L2 LINE L2 3136 3271 -1 2238 88 13 0 chr3 14811987 14812292 -212712286 - AluY SINE Alu -2 309 1 2022 116 0 28 chr3 14812342 14812661 -212711917 - AluSg SINE Alu 0 310 1 305 170 0 19 chr3 14812789 14812842 -212711736 + MER5B DNA MER1_type 5 56 -122 650 245 11 5 chr3 14813242 14813430 -212711148 + AluSx SINE Alu 5 193 -119 2088 105 0 32 chr3 14813910 14814225 -212710353 - AluSx SINE Alu -7 305 1 708 172 52 0 chr3 14814422 14814556 -212710022 - FLAM_C SINE Alu -1 142 2 1705 153 7 7 chr3 14814568 14814855 -212709723 - AluJo SINE Alu -25 287 1 921 116 7 14 chr3 14815176 14815323 -212709255 + AluSg/x SINE Alu 157 302 -8 22 0 0 0 chr3 14815505 14815527 -212709051 + AT_rich Low_complexity Low_complexity 1 22 0 717 218 0 0 chr3 14816993 14817126 -212707452 + FLAM_C SINE Alu 6 138 -5 2146 91 7 0 chr3 14817127 14817412 -212707166 + AluSg SINE Alu 3 289 -21 331 228 13 19 chr3 14818530 14818688 -212705890 + C-rich Low_complexity Low_complexity 3 159 0 374 280 37 0 chr3 14818706 14818813 -212705765 - L1M4 LINE L1 -2963 3183 3073 7094 45 9 48 chr3 14818819 14820356 -212704222 + SVA Other Other 29 1386 0 5699 82 25 22 chr3 14820369 14820972 -212703606 + L1MA3 LINE L1 5461 6068 -237 1985 134 0 0 chr3 14820972 14821270 -212703308 - AluSx SINE Alu -14 298 1 5699 82 25 22 chr3 14821270 14821481 -212703097 + L1MA3 LINE L1 6068 6277 -28 2074 114 0 3 chr3 14821491 14821790 -212702788 - AluSx SINE Alu -14 298 1 574 252 8 8 chr3 14823017 14823144 -212701434 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14823148 14823454 -212701124 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14824127 14824147 -212700431 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14824381 14824694 -212699884 - AluY SINE Alu 0 311 1 2342 76 0 3 chr3 14824939 14825242 -212699336 - AluYa5 SINE Alu -9 302 1 943 155 0 42 chr3 14825759 14825927 -212698651 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14825927 14825954 -212698624 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1525 125 4 93 chr3 14825955 14826234 -212698344 - AluSx SINE Alu -30 282 29 1193 178 4 21 chr3 14826234 14826470 -212698108 + AluJo SINE Alu 77 308 -4 1908 128 10 3 chr3 14826487 14826776 -212697802 + AluSx SINE Alu 2 292 -20 819 131 0 51 chr3 14826814 14826951 -212697627 + FLAM_C SINE Alu 2 131 -2 1307 184 4 16 chr3 14826961 14827211 -212697367 + AluJo SINE Alu 3 249 -63 2323 53 0 0 chr3 14827560 14827865 -212696713 - AluY SINE Alu 0 305 1 1705 109 87 11 chr3 14827893 14828168 -212696410 + AluSx SINE Alu 1 296 -16 1858 154 0 10 chr3 14828176 14828474 -212696104 + AluSx SINE Alu 7 301 -11 1982 83 3 73 chr3 14828523 14828836 -212695742 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 14829115 14829423 -212695155 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 14829458 14829658 -212694920 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 14829700 14829992 -212694586 + AluJo SINE Alu 1 292 -20 817 289 174 60 chr3 14831214 14832099 -212692479 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 14832156 14832451 -212692127 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 14832451 14832497 -212692081 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 14832521 14832817 -212691761 + L1ME LINE L1 5374 5676 -488 2413 63 0 0 chr3 14832818 14833119 -212691459 + AluY SINE Alu 1 301 -10 2059 111 0 0 chr3 14833223 14833503 -212691075 - AluSg SINE Alu -30 280 1 1707 149 10 36 chr3 14833503 14833811 -212690767 - AluJb SINE Alu -11 301 1 210 234 0 0 chr3 14833886 14833933 -212690645 + L2 LINE L2 3267 3313 0 204 375 68 17 chr3 14834036 14834212 -212690366 - L2 LINE L2 -558 2756 2572 2265 97 0 0 chr3 14834592 14834901 -212689677 - AluSc SINE Alu 0 309 1 1545 165 49 0 chr3 14835704 14835989 -212688589 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 14836493 14836515 -212688063 + AT_rich Low_complexity Low_complexity 1 22 0 2223 98 0 3 chr3 14836862 14837158 -212687420 - AluSg SINE Alu -15 295 1 2167 94 0 7 chr3 14838212 14838511 -212686067 + AluSq SINE Alu 1 297 -16 228 35 0 0 chr3 14838677 14838706 -212685872 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1903 121 8 0 chr3 14838714 14838979 -212685599 - AluSq SINE Alu -46 267 1 426 283 96 26 chr3 14839092 14839275 -212685303 - MIR SINE MIR -50 212 20 2271 87 3 16 chr3 14839656 14839967 -212684611 - AluSg SINE Alu -1 309 3 1831 174 0 0 chr3 14840287 14840591 -212683987 - AluJb SINE Alu -7 305 2 562 184 0 0 chr3 14840603 14840706 -212683872 + AluJb SINE Alu 203 305 -7 756 101 0 0 chr3 14841026 14841125 -212683453 + AluSg SINE Alu 3 101 -209 1888 160 3 0 chr3 14841896 14842203 -212682375 - AluJb SINE Alu -4 308 1 23 33 0 0 chr3 14843383 14843413 -212681165 + AT_rich Low_complexity Low_complexity 1 30 0 204 240 20 0 chr3 14844115 14844165 -212680413 - MIR SINE MIR -99 163 113 756 71 0 0 chr3 14845090 14845188 -212679390 - AluY SINE Alu -9 302 205 9164 42 2 1 chr3 14846097 14847167 -212677411 - MER11C LTR ERVK 0 1071 1 668 270 81 16 chr3 14847366 14847551 -212677027 - MIR SINE MIR -65 197 1 717 218 0 0 chr3 14848557 14848690 -212675888 + FLAM_C SINE Alu 6 138 -5 2187 106 0 0 chr3 14848691 14848984 -212675594 + AluSg SINE Alu 3 295 -15 1362 159 83 25 chr3 14849125 14849402 -212675176 + AluJo SINE Alu 1 293 -19 1907 130 7 7 chr3 14849593 14849885 -212674693 - AluSx SINE Alu -20 292 1 2140 92 14 0 chr3 14849999 14850291 -212674287 + AluSx SINE Alu 1 296 -16 2087 115 3 3 chr3 14850589 14850894 -212673684 - AluSc SINE Alu -4 305 1 2152 121 0 3 chr3 14851347 14851654 -212672924 - AluSg SINE Alu -4 306 1 2319 54 0 63 chr3 14851754 14852085 -212672493 + AluY SINE Alu 1 310 -1 1589 160 0 47 chr3 14852197 14852332 -212672246 + AluJb SINE Alu 12 152 -160 2190 98 3 0 chr3 14852332 14852637 -212671941 + AluSp SINE Alu 1 306 -7 1589 160 0 47 chr3 14852637 14852801 -212671777 + AluJb SINE Alu 152 297 -15 490 88 0 15 chr3 14854144 14854234 -212670344 - Alu SINE Alu 0 310 222 815 108 8 8 chr3 14854234 14854363 -212670215 - AluSq/x SINE Alu -184 129 1 191 257 86 76 chr3 14854405 14854510 -212670068 - MIR SINE MIR -37 225 120 2156 102 3 3 chr3 14854680 14854983 -212669595 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 14854984 14855033 -212669545 + (TA)n Simple_repeat Simple_repeat 1 49 0 639 227 35 0 chr3 14855038 14855179 -212669399 + MER5A DNA MER1_type 5 150 -39 2012 104 31 0 chr3 14855843 14856130 -212668448 + AluSx SINE Alu 1 296 -16 2388 52 7 3 chr3 14856490 14856795 -212667783 - AluY SINE Alu -3 308 3 522 96 0 0 chr3 14856882 14856955 -212667623 + AluS SINE Alu 6 78 -234 626 183 0 40 chr3 14858031 14858157 -212666421 + FLAM_A SINE Alu 21 141 -1 2124 95 3 0 chr3 14858714 14859008 -212665570 - AluSg SINE Alu -9 301 7 2224 69 3 3 chr3 14859039 14859330 -212665248 - AluY SINE Alu -20 291 1 2346 82 0 0 chr3 14859488 14859791 -212664787 + AluSx SINE Alu 1 303 -9 2131 122 0 3 chr3 14860318 14860621 -212663957 + AluSx SINE Alu 1 312 0 2296 65 3 19 chr3 14860749 14861059 -212663519 + AluSp SINE Alu 1 305 -8 384 313 27 34 chr3 14861342 14861489 -212663089 - MIR SINE MIR -19 243 98 2047 103 0 41 chr3 14861531 14861850 -212662728 - AluSq SINE Alu -7 306 1 2228 74 0 17 chr3 14862026 14862325 -212662253 + AluSp SINE Alu 1 294 -19 1786 144 17 7 chr3 14862655 14862953 -212661625 - AluJb SINE Alu -11 301 1 1905 118 17 7 chr3 14862993 14863280 -212661298 + AluSx SINE Alu 1 290 -22 2135 112 0 3 chr3 14863437 14863741 -212660837 + AluSq SINE Alu 1 303 -10 180 111 0 0 chr3 14863741 14863768 -212660810 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1668 114 28 48 chr3 14863850 14864139 -212660439 + AluJb SINE Alu 1 283 -29 2364 71 0 7 chr3 14864139 14864447 -212660131 + AluSx SINE Alu 1 306 -6 185 290 129 32 chr3 14865327 14865451 -212659127 + L2 LINE L2 2625 2760 -554 240 197 115 0 chr3 14865552 14865613 -212658965 - L2 LINE L2 -455 2859 2792 1519 153 34 27 chr3 14866171 14866433 -212658145 + AluJo SINE Alu 1 264 -48 1736 151 13 10 chr3 14866601 14866905 -212657673 - AluSx SINE Alu -7 305 1 2055 103 14 0 chr3 14867187 14867479 -212657099 + AluSx SINE Alu 6 301 -11 278 190 0 127 chr3 14867648 14867703 -212656875 + Tigger2 DNA MER2_type 1 31 -403 1865 150 3 3 chr3 14867703 14867996 -212656582 - AluSx SINE Alu -19 293 1 278 190 0 127 chr3 14867996 14868019 -212656559 + Tigger2 DNA MER2_type 31 55 -379 * 1236 118 98 10 chr3 14868003 14868206 -212656372 + Tigger2 DNA MER2_type 2267 2487 -231 434 99 56 14 chr3 14868206 14868310 -212656268 - AluSc SINE Alu 0 311 205 * 486 73 0 0 chr3 14868305 14868373 -212656205 + Alu SINE Alu 236 303 -9 2005 132 0 3 chr3 14868383 14868678 -212655900 + AluSx SINE Alu 1 294 -18 1319 73 0 0 chr3 14869240 14869405 -212655173 - AluSg/x SINE Alu -14 296 132 2064 134 0 0 chr3 14869405 14869703 -212654875 - AluSx SINE Alu -14 298 1 1053 159 43 19 chr3 14870320 14870528 -212654050 + L1MB7 LINE L1 5925 6137 -47 214 281 0 53 chr3 14870671 14870728 -212653850 + MIR3 SINE MIR 114 167 -41 773 186 117 0 chr3 14870945 14871090 -212653488 - AluSp SINE Alu -17 296 135 2005 79 6 103 chr3 14871091 14871431 -212653147 - AluSx SINE Alu -5 307 1 186 291 38 63 chr3 14871512 14871591 -212652987 - L3b LINE CR1 -80 1503 1427 1541 153 0 62 chr3 14871637 14871944 -212652634 + AluJo SINE Alu 6 293 -19 2194 96 3 0 chr3 14872638 14872940 -212651638 - AluSg1 SINE Alu -6 303 1 2277 93 3 0 chr3 14872940 14873242 -212651336 - AluSx SINE Alu -9 303 1 313 198 40 87 chr3 14873339 14873380 -212651198 - MLT1D LTR MaLR 0 505 464 2182 93 0 23 chr3 14873380 14873690 -212650888 + AluSc SINE Alu 1 303 -6 313 198 40 87 chr3 14873690 14873774 -212650804 - MLT1D LTR MaLR -41 464 386 341 263 26 0 chr3 14873783 14873859 -212650719 - AluJ/FLAM SINE Alu -224 78 1 * 1632 250 36 50 chr3 14873859 14874320 -212650258 - MLT1E2 LTR MaLR -132 494 39 1922 127 0 7 chr3 14874320 14874611 -212649967 - AluSx SINE Alu -22 290 2 1632 250 36 50 chr3 14874611 14874638 -212649940 - MLT1E2 LTR MaLR -587 39 13 2272 102 0 0 chr3 14875016 14875320 -212649258 + AluSx SINE Alu 1 304 -8 192 270 80 90 chr3 14876317 14876417 -212648161 - L2 LINE L2 0 3272 3174 2299 57 0 20 chr3 14876512 14876813 -212647765 + AluY SINE Alu 1 295 -16 1813 110 57 11 chr3 14877005 14877286 -212647292 + AluSx SINE Alu 1 294 -18 2057 120 0 10 chr3 14877523 14877822 -212646756 + AluSq SINE Alu 1 296 -17 663 198 9 0 chr3 14877887 14878003 -212646575 + FLAM_A SINE Alu 1 117 -16 23 33 0 0 chr3 14878003 14878033 -212646545 + AT_rich Low_complexity Low_complexity 1 30 0 2216 94 0 3 chr3 14878039 14878336 -212646242 - AluSc SINE Alu -12 297 2 29 0 0 0 chr3 14878372 14878401 -212646177 + AT_rich Low_complexity Low_complexity 1 29 0 1206 156 13 36 chr3 14878421 14878646 -212645932 + AluJo SINE Alu 75 294 -18 892 29 0 0 chr3 14878885 14878990 -212645588 + AluSc SINE Alu 1 105 -204 1122 111 81 77 chr3 14879130 14879365 -212645213 + MER46A DNA MER2_type 1 236 0 1775 149 3 7 chr3 14879393 14879681 -212644897 + AluJo SINE Alu 1 287 -25 708 172 52 0 chr3 14879693 14879827 -212644751 + FLAM_C SINE Alu 2 142 -1 1822 143 0 31 chr3 14880024 14880344 -212644234 + AluSx SINE Alu 1 311 0 1497 136 0 0 chr3 14880424 14880652 -212643926 - AluSg/x SINE Alu 0 310 83 969 115 0 0 chr3 14880685 14880815 -212643763 - FLAM_C SINE Alu -2 131 2 533 87 0 33 chr3 14880844 14880936 -212643642 + FLAM_C SINE Alu 55 143 0 405 307 129 6 chr3 14880986 14881149 -212643429 - MIR3 SINE MIR 0 208 26 22 0 0 0 chr3 14881405 14881427 -212643151 + AT_rich Low_complexity Low_complexity 1 22 0 1426 191 7 7 chr3 14881432 14881715 -212642863 + AluJo SINE Alu 6 288 -24 239 269 104 0 chr3 14881832 14881899 -212642679 - L2 LINE L2 -50 3222 3149 278 192 112 36 chr3 14882147 14882269 -212642309 + L1ME1 LINE L1 5226 5365 -814 1918 125 54 0 chr3 14882269 14882564 -212642014 + AluSx SINE Alu 1 311 -1 278 192 112 36 chr3 14882564 14882580 -212641998 + L1ME1 LINE L1 5365 5378 -801 539 194 0 0 chr3 14882594 14882692 -212641886 + U13 snRNA snRNA 5 102 -2 1892 142 55 2 chr3 14882713 14883165 -212641413 + L1MA9 LINE L1 5193 5780 -532 2144 92 3 0 chr3 14883166 14883449 -212641129 + AluSp SINE Alu 2 285 -28 851 190 25 25 chr3 14883465 14883665 -212640913 + L1MA9 LINE L1 5935 6134 -178 988 196 56 82 chr3 14883665 14883759 -212640819 - AluJb SINE Alu -14 298 203 3440 109 77 38 chr3 14883759 14884317 -212640261 + LTR19B LTR ERV1 1 580 0 1567 101 0 0 chr3 14884317 14884526 -212640052 - AluSq SINE Alu -104 209 1 988 196 56 82 chr3 14884526 14884736 -212639842 - AluJb SINE Alu -107 205 1 358 148 0 0 chr3 14884753 14884807 -212639771 + L1ME1 LINE L1 5365 5418 -748 6193 133 291 14 chr3 14884808 14886136 -212638442 - pTR5 LTR ERV1 0 2438 743 2179 189 85 62 chr3 14886136 14886222 -212638356 + L1ME1 LINE L1 5413 5496 -670 2335 70 7 0 chr3 14886222 14886523 -212638055 + AluY SINE Alu 1 303 -8 2179 189 85 62 chr3 14886523 14887049 -212637529 + L1ME1 LINE L1 5496 6039 -127 635 76 0 0 chr3 14887062 14887141 -212637437 - AluSg/x SINE Alu -14 296 218 2120 94 0 13 chr3 14887318 14887617 -212636961 - AluY SINE Alu -16 295 1 1915 135 13 7 chr3 14887735 14888039 -212636539 - AluJb SINE Alu -6 306 1 2054 112 7 3 chr3 14888275 14888579 -212635999 - AluSx SINE Alu -7 305 1 1856 137 4 0 chr3 14888855 14889133 -212635445 - AluJb SINE Alu -15 297 19 195 279 0 0 chr3 14889206 14889249 -212635329 + MIR SINE MIR 193 235 -27 1878 132 7 3 chr3 14889282 14889571 -212635007 + AluSx SINE Alu 1 290 -22 367 325 69 65 chr3 14889665 14889752 -212634826 + L2 LINE L2 3066 3151 -162 2265 91 3 0 chr3 14889752 14890050 -212634528 - AluSg SINE Alu -11 299 1 367 325 69 65 chr3 14890050 14890208 -212634370 + L2 LINE L2 3151 3312 -1 546 115 73 10 chr3 14890357 14890453 -212634125 + U13 snRNA snRNA 3 104 0 1915 122 0 7 chr3 14890481 14890777 -212633801 + AluJb SINE Alu 3 296 -16 206 263 53 0 chr3 14891467 14891543 -212633035 - MIR SINE MIR -119 143 64 2455 52 0 0 chr3 14891544 14891849 -212632729 - AluSg SINE Alu -5 305 1 258 330 21 0 chr3 14891996 14892093 -212632485 - L2 LINE L2 -89 3183 3085 1865 103 10 55 chr3 14892323 14892634 -212631944 - AluSx SINE Alu -15 297 1 1826 116 0 4 chr3 14892667 14892935 -212631643 - AluSc SINE Alu -25 284 18 327 377 84 0 chr3 14892959 14893126 -212631452 - L2 LINE L2 -566 2748 2568 1376 154 17 80 chr3 14893392 14893691 -212630887 + AluJo SINE Alu 3 282 -30 917 154 12 117 chr3 14893702 14893942 -212630636 - AluJo SINE Alu -12 300 86 835 9 0 38 chr3 14893961 14894066 -212630512 - L1PA5 LINE L1 0 6154 6054 449 62 10 82 chr3 14894104 14894162 -212630416 + L1MB3 LINE L1 6094 6144 -39 1673 123 0 12 chr3 14894162 14894415 -212630163 + AluSx SINE Alu 49 298 -14 449 62 10 82 chr3 14894415 14894453 -212630125 + L1MB3 LINE L1 6144 6183 0 2384 80 0 3 chr3 14894629 14894941 -212629637 + AluY SINE Alu 1 311 0 358 58 115 0 chr3 14894945 14894997 -212629581 - L1ME3 LINE L1 -12 6150 6093 260 211 202 0 chr3 14895135 14895239 -212629339 + MIR SINE MIR 16 140 -68 2360 70 0 3 chr3 14895379 14895679 -212628899 - AluY SINE Alu -12 299 1 1989 108 3 7 chr3 14896219 14896515 -212628063 - AluSc SINE Alu -14 295 1 2144 115 7 0 chr3 14896565 14896870 -212627708 - AluSx SINE Alu -5 307 1 1309 192 21 31 chr3 14897031 14897318 -212627260 + AluJo SINE Alu 17 300 -12 2614 23 3 0 chr3 14897515 14897817 -212626761 - AluYa5 SINE Alu -8 303 1 231 36 0 0 chr3 14897975 14898003 -212626575 + (CA)n Simple_repeat Simple_repeat 1 28 0 26 74 0 0 chr3 14898043 14898097 -212626481 + AT_rich Low_complexity Low_complexity 1 54 0 406 233 86 55 chr3 14898099 14898282 -212626296 + L1ME1 LINE L1 5905 6164 -2 1657 128 34 60 chr3 14898319 14898617 -212625961 + AluSx SINE Alu 1 290 -22 2188 113 0 0 chr3 14898635 14898937 -212625641 + AluSq SINE Alu 1 302 -11 5850 32 17 10 chr3 14899452 14900161 -212624417 + SVA Other Other 673 1386 0 5699 82 25 22 chr3 14900174 14900777 -212623801 + L1MA3 LINE L1 5461 6068 -237 1985 134 0 0 chr3 14900777 14901075 -212623503 - AluSx SINE Alu -14 298 1 5699 82 25 22 chr3 14901075 14901286 -212623292 + L1MA3 LINE L1 6068 6277 -28 2074 114 0 3 chr3 14901296 14901595 -212622983 - AluSx SINE Alu -14 298 1 574 252 8 8 chr3 14902822 14902949 -212621629 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14902953 14903259 -212621319 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14903932 14903952 -212620626 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14904186 14904499 -212620079 - AluY SINE Alu 0 311 1 2334 76 0 3 chr3 14904744 14905046 -212619532 - AluYa5 SINE Alu -10 301 1 943 155 0 42 chr3 14905563 14905731 -212618847 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14905731 14905758 -212618820 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1525 125 4 93 chr3 14905759 14906038 -212618540 - AluSx SINE Alu -30 282 29 1193 178 4 21 chr3 14906038 14906274 -212618304 + AluJo SINE Alu 77 308 -4 1908 128 10 3 chr3 14906291 14906580 -212617998 + AluSx SINE Alu 2 292 -20 819 131 0 51 chr3 14906618 14906755 -212617823 + FLAM_C SINE Alu 2 131 -2 1307 184 4 16 chr3 14906765 14907015 -212617563 + AluJo SINE Alu 3 249 -63 2323 53 0 0 chr3 14907364 14907669 -212616909 - AluY SINE Alu 0 305 1 1705 109 87 11 chr3 14907697 14907972 -212616606 + AluSx SINE Alu 1 296 -16 1858 154 0 10 chr3 14907980 14908278 -212616300 + AluSx SINE Alu 7 301 -11 1982 83 3 73 chr3 14908327 14908640 -212615938 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 14908919 14909227 -212615351 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 14909262 14909462 -212615116 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 14909504 14909796 -212614782 + AluJo SINE Alu 1 292 -20 864 276 163 64 chr3 14911018 14911903 -212612675 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 14911960 14912255 -212612323 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 14912255 14912301 -212612277 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 14912325 14912621 -212611957 + L1ME LINE L1 5374 5676 -488 2392 70 0 0 chr3 14912622 14912923 -212611655 + AluY SINE Alu 1 301 -10 469 245 29 103 chr3 14913130 14913253 -212611325 - MER5A DNA MER1_type 0 189 85 2102 94 7 0 chr3 14913253 14913540 -212611038 - AluSx SINE Alu -17 295 7 469 245 29 103 chr3 14913540 14913620 -212610958 - MER5A DNA MER1_type -104 85 1 1231 169 19 100 chr3 14913687 14914007 -212610571 - AluJo SINE Alu -18 294 1 1773 130 40 10 chr3 14914530 14914829 -212609749 + AluSx SINE Alu 1 308 -4 28 29 0 0 chr3 14914882 14914917 -212609661 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 14915100 14915120 -212609458 + (T)n Simple_repeat Simple_repeat 1 20 0 849 197 26 21 chr3 14915592 14915785 -212608793 + AluSx SINE Alu 2 195 -117 2101 112 0 0 chr3 14915938 14916225 -212608353 - AluSg SINE Alu -23 287 1 1707 149 10 36 chr3 14916225 14916533 -212608045 - AluJb SINE Alu -12 300 1 210 234 0 0 chr3 14916608 14916655 -212607923 + L2 LINE L2 3267 3313 0 204 375 68 17 chr3 14916758 14916934 -212607644 - L2 LINE L2 -558 2756 2572 2265 97 0 0 chr3 14917314 14917623 -212606955 - AluSc SINE Alu 0 309 1 1545 165 49 0 chr3 14918425 14918710 -212605868 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 14919214 14919236 -212605342 + AT_rich Low_complexity Low_complexity 1 22 0 2223 98 0 3 chr3 14919583 14919879 -212604699 - AluSg SINE Alu -15 295 1 2075 102 10 7 chr3 14920933 14921228 -212603350 + AluSx SINE Alu 1 296 -16 206 263 53 0 chr3 14921587 14921663 -212602915 - MIR SINE MIR -119 143 64 2455 52 0 0 chr3 14921664 14921969 -212602609 - AluSg SINE Alu -5 305 1 258 330 21 0 chr3 14922116 14922213 -212602365 - L2 LINE L2 -89 3183 3085 1865 103 10 55 chr3 14922443 14922754 -212601824 - AluSx SINE Alu -15 297 1 1826 116 0 4 chr3 14922787 14923055 -212601523 - AluSc SINE Alu -25 284 18 327 377 84 0 chr3 14923079 14923246 -212601332 - L2 LINE L2 -566 2748 2568 1376 154 17 80 chr3 14923512 14923811 -212600767 + AluJo SINE Alu 3 282 -30 917 154 12 117 chr3 14923822 14924062 -212600516 - AluJo SINE Alu -12 300 86 835 9 0 38 chr3 14924081 14924186 -212600392 - L1PA5 LINE L1 0 6154 6054 449 62 10 82 chr3 14924224 14924282 -212600296 + L1MB3 LINE L1 6094 6144 -39 1673 123 0 12 chr3 14924282 14924535 -212600043 + AluSx SINE Alu 49 298 -14 449 62 10 82 chr3 14924535 14924573 -212600005 + L1MB3 LINE L1 6144 6183 0 2384 80 0 3 chr3 14924749 14925061 -212599517 + AluY SINE Alu 1 311 0 358 58 115 0 chr3 14925065 14925117 -212599461 - L1ME2 LINE L1 -14 6150 6093 260 211 202 0 chr3 14925255 14925359 -212599219 + MIR SINE MIR 16 140 -68 2360 70 0 3 chr3 14925499 14925799 -212598779 - AluY SINE Alu -12 299 1 1989 108 3 7 chr3 14926340 14926636 -212597942 - AluSc SINE Alu -14 295 1 2144 115 7 0 chr3 14926686 14926991 -212597587 - AluSx SINE Alu -5 307 1 1463 170 17 35 chr3 14927152 14927441 -212597137 + AluJo SINE Alu 17 300 -12 2741 3 0 0 chr3 14927638 14927941 -212596637 - AluYa5 SINE Alu -8 303 1 555 215 233 34 chr3 14927965 14928010 -212596568 - MLT1H LTR MaLR -8 541 506 1892 110 34 14 chr3 14928010 14928301 -212596277 - AluSx SINE Alu -15 297 1 555 215 233 34 chr3 14928301 14928429 -212596149 - MLT1H LTR MaLR -43 506 405 1865 157 3 3 chr3 14928429 14928741 -212595837 - AluJo SINE Alu 0 312 1 555 215 233 34 chr3 14928741 14928960 -212595618 - MLT1H LTR MaLR -144 405 20 192 314 157 33 chr3 14929702 14929823 -212594755 + L2 LINE L2 3136 3271 -1 189 0 0 0 chr3 14930217 14930238 -212594340 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1762 114 52 7 chr3 14930241 14930512 -212594066 - AluSq SINE Alu -30 283 1 517 259 113 8 chr3 14930769 14931008 -212593570 - L1ME4a LINE L1 -38 6083 5820 1595 180 20 7 chr3 14931121 14931416 -212593162 + AluJo SINE Alu 6 304 -8 2216 97 0 7 chr3 14931419 14931718 -212592860 + AluSx SINE Alu 1 297 -15 330 62 0 0 chr3 14931824 14931872 -212592706 - Alu SINE Alu 0 301 254 * 370 147 39 25 chr3 14931867 14931996 -212592582 - MER21A LTR ERV1 -499 364 214 899 141 7 0 chr3 14932004 14932146 -212592432 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 14932146 14932208 -212592370 - MER21A LTR ERV1 -863 68 3 262 184 23 46 chr3 14932208 14932295 -212592283 - Tigger4(Zombi) DNA MER2_type -141 2590 2506 198 283 0 17 chr3 14932424 14932484 -212592094 + L2 LINE L2 3189 3247 -25 1471 128 9 133 chr3 14932500 14932845 -212591733 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 14933177 14933200 -212591378 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 808 165 0 0 chr3 14933200 14933321 -212591257 - AluJb SINE Alu -190 122 2 2114 96 0 17 chr3 14933537 14933829 -212590749 - AluSx SINE Alu -16 296 10 22 0 0 0 chr3 14934608 14934630 -212589948 + AT_rich Low_complexity Low_complexity 1 22 0 1595 180 20 7 chr3 14935124 14935419 -212589159 + AluJo SINE Alu 6 304 -8 2168 88 0 38 chr3 14935422 14935740 -212588838 + AluSq SINE Alu 1 306 -7 384 313 27 34 chr3 14935782 14935929 -212588649 + MIR SINE MIR 98 243 -19 311 183 158 58 chr3 14936666 14936786 -212587792 + MIR SINE MIR 75 206 -56 21 0 0 0 chr3 14936787 14936808 -212587770 + AT_rich Low_complexity Low_complexity 1 21 0 310 327 175 6 chr3 14936809 14937124 -212587454 + L2 LINE L2 1630 1997 -1317 2748 13 0 3 chr3 14937125 14937437 -212587141 - AluYa5 SINE Alu 0 311 1 1900 100 14 10 chr3 14937443 14937732 -212586846 - AluY SINE Alu -20 291 2 873 110 0 22 chr3 14937732 14937868 -212586710 - AluSq/x SINE Alu -178 135 3 794 176 7 0 chr3 14937874 14938010 -212586568 - FRAM SINE Alu -8 168 32 1362 159 83 25 chr3 14938297 14938574 -212586004 - AluJo SINE Alu -19 293 1 2225 88 0 3 chr3 14938715 14939010 -212585568 - AluSc SINE Alu -15 294 1 1656 156 0 20 chr3 14939602 14939897 -212584681 + AluJb SINE Alu 23 311 -1 23 0 0 0 chr3 14940044 14940067 -212584511 + AT_rich Low_complexity Low_complexity 1 23 0 229 313 12 0 chr3 14940254 14940337 -212584241 - L1MC/D LINE L1 -1911 5897 5814 1913 174 26 5 chr3 14940343 14940722 -212583856 - L1MB4 LINE L1 -1 6179 5793 2116 53 3 73 chr3 14940948 14941274 -212583304 - AluY SINE Alu 0 305 1 2038 143 3 3 chr3 14992041 14992335 -212532243 - AluSx SINE Alu -18 294 1 492 102 136 34 chr3 14992391 14992512 -212532066 + AluY SINE Alu 184 313 0 1163 118 98 10 chr3 14992512 14992715 -212531863 - Tigger2 DNA MER2_type -231 2487 2267 262 190 0 127 chr3 14992699 14992722 -212531856 - Tigger2 DNA MER2_type -379 55 31 * 2013 150 3 3 chr3 14992722 14993015 -212531563 + AluSx SINE Alu 1 293 -19 262 190 0 127 chr3 14993015 14993070 -212531508 - Tigger2 DNA MER2_type -403 31 1 2200 103 14 0 chr3 14993239 14993531 -212531047 - AluSx SINE Alu -11 301 6 2038 141 7 10 chr3 14993813 14994119 -212530459 + AluSx SINE Alu 1 305 -7 1649 155 34 26 chr3 14994284 14994549 -212530029 - AluJo SINE Alu -45 267 1 245 197 115 0 chr3 14995107 14995168 -212529410 + L2 LINE L2 2792 2859 -455 193 290 129 32 chr3 14995269 14995393 -212529185 - L2 LINE L2 -554 2760 2625 2510 71 0 7 chr3 14996273 14996581 -212527997 - AluSx SINE Alu -6 306 1 1800 114 28 48 chr3 14996581 14996870 -212527708 - AluJb SINE Alu -29 283 1 180 111 0 0 chr3 14996952 14996979 -212527599 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 2288 112 0 3 chr3 14996979 14997283 -212527295 - AluSq SINE Alu -10 303 1 2052 119 18 3 chr3 14997440 14997726 -212526852 - AluSx SINE Alu -22 290 1 1977 144 13 7 chr3 14997766 14998065 -212526513 + AluJb SINE Alu 1 301 -11 2360 70 0 20 chr3 14998395 14998695 -212525883 - AluSp SINE Alu -19 294 1 2199 103 0 41 chr3 14998872 14999191 -212525387 + AluSq SINE Alu 1 306 -7 382 313 27 34 chr3 14999233 14999380 -212525198 + MIR SINE MIR 98 243 -19 2454 64 3 19 chr3 14999663 14999974 -212524604 - AluSp SINE Alu -7 306 1 2282 127 0 3 chr3 15000097 15000405 -212524173 - AluSx SINE Alu -5 307 1 1858 131 38 14 chr3 15000673 15000963 -212523615 + AluSx SINE Alu 1 297 -15 2890 3 0 0 chr3 15001032 15001336 -212523242 + AluYa5 SINE Alu 1 304 -7 1733 169 0 24 chr3 15001525 15001821 -212522757 - AluJo SINE Alu -7 305 17 1004 109 132 23 chr3 15001966 15001982 -212522596 + AluSq SINE Alu 120 133 -180 2367 81 0 13 chr3 15001982 15002291 -212522287 + AluY SINE Alu 1 305 -6 1004 109 132 23 chr3 15002291 15002448 -212522130 + AluSq SINE Alu 133 312 -1 988 84 0 0 chr3 15002649 15002768 -212521810 - AluY SINE Alu -192 119 1 532 87 0 33 chr3 15002796 15002888 -212521690 + FLAM_A SINE Alu 54 142 0 24 0 0 0 chr3 15002968 15002992 -212521586 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 15003359 15003380 -212521198 + AT_rich Low_complexity Low_complexity 1 21 0 294 170 0 0 chr3 15003804 15003857 -212520721 + Alu SINE Alu 241 293 -7 2204 123 0 23 chr3 15003857 15004166 -212520412 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr3 15004212 15004237 -212520341 + AT_rich Low_complexity Low_complexity 1 25 0 254 0 0 77 chr3 15004504 15004543 -212520035 + (C)n Simple_repeat Simple_repeat 1 36 0 29 28 0 0 chr3 15005278 15005314 -212519264 + AT_rich Low_complexity Low_complexity 1 36 0 184 148 0 0 chr3 15005662 15005689 -212518889 + MIR3 SINE MIR 155 181 -27 970 142 58 0 chr3 15005725 15005880 -212518698 + AluSg/x SINE Alu 137 300 -12 1949 144 0 63 chr3 15006091 15006424 -212518154 + AluJb SINE Alu 1 312 0 763 132 0 0 chr3 15006579 15006685 -212517893 - AluSq/x SINE Alu -206 107 2 1987 126 7 0 chr3 15006719 15007004 -212517574 - AluSx SINE Alu -25 287 1 951 181 0 0 chr3 15007023 15007205 -212517373 + AluSg/x SINE Alu 130 311 -1 516 283 107 0 chr3 15008110 15008269 -212516309 - AluSp SINE Alu -17 296 121 26 30 0 0 chr3 15008434 15008467 -212516111 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr3 15008975 15009011 -212515567 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr3 15009011 15009038 -212515540 + GC_rich Low_complexity Low_complexity 1 27 0 656 165 0 0 chr3 15009250 15009347 -212515231 + AluJb SINE Alu 194 290 -22 435 248 8 56 chr3 15009349 15009474 -212515104 - MIR SINE MIR -55 207 89 2531 66 0 3 chr3 15009644 15009949 -212514629 - AluY SINE Alu -7 304 1 5065 83 7 34 chr3 15010496 15011254 -212513324 - L1PA6 LINE L1 -5 6149 5413 1162 82 7 0 chr3 15011637 15011783 -212512795 + AluY SINE Alu 158 304 -7 983 77 0 0 chr3 15011784 15011901 -212512677 - AluSg SINE Alu -193 117 1 881 285 21 16 chr3 15011950 15012192 -212512386 - MIR SINE MIR -4 258 16 22 0 0 0 chr3 15012762 15012784 -212511794 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 15013099 15013127 -212511451 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 15013332 15013356 -212511222 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr3 15013590 15013610 -212510968 + (T)n Simple_repeat Simple_repeat 1 20 0 1277 196 21 14 chr3 15014218 15014503 -212510075 + AluJb SINE Alu 11 297 -15 2397 80 0 10 chr3 15014665 15014965 -212509613 + AluY SINE Alu 1 297 -14 1357 110 55 0 chr3 15015066 15015284 -212509294 - MER30 DNA MER1_type 0 230 1 200 243 122 27 chr3 15015366 15015440 -212509138 + MIR SINE MIR 64 144 -64 537 257 29 14 chr3 15015481 15015621 -212508957 - MIR SINE MIR -75 187 46 714 44 0 0 chr3 15015633 15015724 -212508854 - AluY SINE Alu -11 300 210 2150 99 0 4 chr3 15015724 15015997 -212508581 - AluSc SINE Alu -36 273 2 29 0 0 0 chr3 15016033 15016062 -212508516 + AT_rich Low_complexity Low_complexity 1 29 0 1279 150 13 44 chr3 15016082 15016309 -212508269 + AluJo SINE Alu 75 294 -18 946 29 0 0 chr3 15016549 15016654 -212507924 + AluSc SINE Alu 1 105 -204 1049 115 81 77 chr3 15016794 15017029 -212507549 + MER46A DNA MER2_type 1 236 0 1926 149 3 7 chr3 15017057 15017345 -212507233 + AluJo SINE Alu 1 287 -25 676 172 52 0 chr3 15017357 15017491 -212507087 + FLAM_C SINE Alu 2 142 -1 1968 143 0 31 chr3 15017688 15018008 -212506570 + AluSx SINE Alu 1 311 0 1618 136 0 0 chr3 15018088 15018316 -212506262 - AluSg/x SINE Alu 0 310 83 928 115 0 0 chr3 15018349 15018479 -212506099 - FLAM_C SINE Alu -2 131 2 496 98 0 33 chr3 15018508 15018600 -212505978 + FLAM_C SINE Alu 55 143 0 362 324 83 0 chr3 15018652 15018797 -212505781 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 15019071 15019093 -212505485 + AT_rich Low_complexity Low_complexity 1 22 0 1570 203 7 7 chr3 15019098 15019399 -212505179 + AluJo SINE Alu 6 306 -6 211 313 104 0 chr3 15019498 15019565 -212505013 - L2 LINE L2 -50 3222 3149 253 182 100 55 chr3 15019843 15019935 -212504643 + L1ME1 LINE L1 5264 5363 -981 2047 129 54 0 chr3 15019935 15020229 -212504349 + AluSx SINE Alu 1 310 -2 253 182 100 55 chr3 15020229 15020246 -212504332 + L1ME1 LINE L1 5363 5378 -966 514 194 0 0 chr3 15020260 15020358 -212504220 + U13 snRNA snRNA 5 102 -2 1806 142 55 2 chr3 15020379 15020831 -212503747 + L1MA9 LINE L1 5193 5780 -532 2259 92 7 0 chr3 15020832 15021114 -212503464 + AluSq SINE Alu 2 285 -28 814 190 25 25 chr3 15021130 15021330 -212503248 + L1MA9 LINE L1 5935 6134 -178 1132 196 56 82 chr3 15021330 15021424 -212503154 - AluJb SINE Alu -14 298 203 3255 109 77 38 chr3 15021424 15021982 -212502596 + LTR19B LTR ERV1 1 580 0 1681 101 0 0 chr3 15021982 15022191 -212502387 - AluSq SINE Alu -104 209 1 1132 196 56 82 chr3 15022191 15022401 -212502177 - AluJb SINE Alu -107 205 1 344 148 0 0 chr3 15022418 15022472 -212502106 + L1ME1 LINE L1 5365 5418 -748 5884 136 291 14 chr3 15022473 15023801 -212500777 - pTR5 LTR ERV1 0 2438 743 2058 189 85 62 chr3 15023801 15023887 -212500691 + L1ME1 LINE L1 5413 5496 -670 2496 70 7 0 chr3 15023887 15024188 -212500390 + AluY SINE Alu 1 303 -8 2058 189 85 62 chr3 15024188 15024714 -212499864 + L1ME1 LINE L1 5496 6039 -127 605 76 0 0 chr3 15024727 15024806 -212499772 - AluSg/x SINE Alu -14 296 218 2276 99 0 13 chr3 15024978 15025282 -212499296 - AluY SINE Alu -11 300 1 2074 135 13 7 chr3 15025400 15025704 -212498874 - AluJb SINE Alu -6 306 1 2212 114 7 3 chr3 15025937 15026244 -212498334 - AluSx SINE Alu -4 308 1 2012 136 4 0 chr3 15026520 15026799 -212497779 - AluJb SINE Alu -14 298 19 189 279 0 0 chr3 15026872 15026915 -212497663 + MIR SINE MIR 193 235 -27 2062 132 7 0 chr3 15026948 15027236 -212497342 + AluSx SINE Alu 1 290 -22 325 350 53 49 chr3 15027331 15027418 -212497160 + L2 LINE L2 3066 3151 -162 2391 92 3 0 chr3 15027418 15027713 -212496865 - AluSg SINE Alu -14 296 1 325 350 53 49 chr3 15027713 15027871 -212496707 + L2 LINE L2 3151 3312 -1 518 146 62 0 chr3 15028020 15028116 -212496462 + U13 snRNA snRNA 3 104 0 2086 121 0 7 chr3 15028144 15028442 -212496136 + AluJb SINE Alu 3 298 -14 205 263 53 0 chr3 15029133 15029209 -212495369 - MIR SINE MIR -119 143 64 2431 50 0 0 chr3 15029214 15029518 -212495060 - AluSg SINE Alu 0 304 1 252 330 21 0 chr3 15029665 15029762 -212494816 - L2 LINE L2 -89 3183 3085 1974 109 10 55 chr3 15029992 15030303 -212494275 - AluSx SINE Alu -15 297 1 1977 112 0 4 chr3 15030336 15030604 -212493974 - AluSc SINE Alu -25 284 18 311 377 84 0 chr3 15030628 15030795 -212493783 - L2 LINE L2 -566 2748 2568 1513 153 17 83 chr3 15031061 15031361 -212493217 + AluJo SINE Alu 3 282 -30 1026 158 12 114 chr3 15031367 15031613 -212492965 - AluJo SINE Alu -6 306 86 775 19 0 29 chr3 15031633 15031737 -212492841 - L1PA5 LINE L1 0 6154 6054 413 62 10 82 chr3 15031775 15031833 -212492745 + L1MB3 LINE L1 6094 6144 -39 1807 123 0 12 chr3 15031833 15032086 -212492492 + AluSx SINE Alu 49 298 -14 413 62 10 82 chr3 15032086 15032124 -212492454 + L1MB3 LINE L1 6144 6183 0 2591 70 0 3 chr3 15032300 15032612 -212491966 + AluY SINE Alu 1 311 0 336 58 115 0 chr3 15032617 15032669 -212491909 - L1ME2 LINE L1 -14 6150 6093 265 234 168 0 chr3 15032807 15032914 -212491664 + MIR SINE MIR 16 140 -68 2478 70 3 3 chr3 15033054 15033353 -212491225 - AluY SINE Alu -12 299 1 2113 105 7 7 chr3 15033893 15034188 -212490390 - AluSc SINE Alu -14 295 1 28 0 0 0 chr3 15034238 15034266 -212490312 + AT_rich Low_complexity Low_complexity 1 28 0 242 278 0 42 chr3 15034412 15034484 -212490094 - AluS SINE Alu -235 73 5 1234 229 7 10 chr3 15034679 15034980 -212489598 + AluY SINE Alu 10 309 -2 216 0 0 0 chr3 15035126 15035150 -212489428 + (T)n Simple_repeat Simple_repeat 1 24 0 1684 146 9 110 chr3 15035360 15035528 -212489050 - AluJo SINE Alu -11 301 118 222 37 0 0 chr3 15035528 15035555 -212489023 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 82 0 0 chr3 15035555 15035837 -212488741 - AluY SINE Alu -29 282 1 1684 146 9 110 chr3 15035837 15035868 -212488710 - AluJo SINE Alu -193 119 86 2517 61 3 0 chr3 15035868 15036161 -212488417 - AluY SINE Alu -17 294 1 1684 146 9 110 chr3 15036161 15036294 -212488284 - AluJo SINE Alu -226 86 1 499 230 138 0 chr3 15036320 15036472 -212488106 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 15036477 15036580 -212487998 - L2 LINE L2 -32 3281 3180 2375 104 10 0 chr3 15037236 15037545 -212487033 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 15037664 15037694 -212486884 + AT_rich Low_complexity Low_complexity 1 30 0 1711 154 70 0 chr3 15037872 15038144 -212486434 - AluJo SINE Alu -21 291 1 228 303 50 69 chr3 15038235 15038325 -212486253 - L1MC/D LINE L1 -1986 5822 5732 2152 138 0 13 chr3 15038325 15038499 -212486079 - AluSx SINE Alu -5 307 137 2187 132 0 0 chr3 15038499 15038794 -212485784 - AluSx SINE Alu -17 295 1 2152 138 0 13 chr3 15038794 15038930 -212485648 - AluSx SINE Alu -175 137 1 228 303 50 69 chr3 15038930 15039100 -212485478 - L1MC/D LINE L1 -2076 5732 5567 315 289 240 10 chr3 15039307 15039615 -212484963 - L2 LINE L2 -9 3304 2926 2013 146 69 50 chr3 15040329 15040388 -212484190 + MER65A LTR ERV1 1 57 -388 2024 106 46 7 chr3 15040388 15040671 -212483907 + AluSx SINE Alu 1 294 -18 2013 146 69 50 chr3 15040671 15041015 -212483563 + MER65A LTR ERV1 57 412 -33 2442 99 0 3 chr3 15041016 15041329 -212483249 - AluSx SINE Alu 0 312 1 2575 56 3 0 chr3 15041335 15041641 -212482937 - AluY SINE Alu -4 307 1 1081 70 8 0 chr3 15041641 15041770 -212482808 - AluSq/x SINE Alu -182 130 1 25 0 0 0 chr3 15041771 15041796 -212482782 + AT_rich Low_complexity Low_complexity 1 25 0 2059 150 0 3 chr3 15041832 15042132 -212482446 - AluSx SINE Alu -13 299 1 2197 74 3 14 chr3 15042496 15042807 -212481771 + AluY SINE Alu 1 308 0 1179 287 76 12 chr3 15042977 15043409 -212481169 - MLT1J LTR MaLR -50 461 2 2527 36 19 26 chr3 15043784 15044091 -212480487 - AluY SINE Alu -6 305 1 895 168 38 32 chr3 15044148 15044333 -212480245 + MER5A DNA MER1_type 4 189 0 2503 75 3 3 chr3 15044336 15044643 -212479935 + AluSp SINE Alu 1 307 -6 2243 112 3 6 chr3 15044653 15044965 -212479613 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 15044965 15045153 -212479425 + AluSg/x SINE Alu 132 303 0 1008 175 0 63 chr3 15045835 15046041 -212478537 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 15046041 15046208 -212478370 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 15046639 15046796 -212477782 - MER103 DNA DNA -3 163 1 2046 117 7 48 chr3 15047399 15047571 -212477007 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 15047571 15047602 -212476976 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2407 70 3 0 chr3 15047602 15047886 -212476692 - AluSp SINE Alu -28 285 1 2046 117 7 48 chr3 15047886 15048021 -212476557 - AluSx SINE Alu -192 120 1 514 303 112 45 chr3 15048023 15048379 -212476199 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 15048994 15049039 -212475539 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 15049084 15049200 -212475378 - MIR SINE MIR -106 156 38 1242 140 0 0 chr3 15049329 15049507 -212475071 - AluSg/x SINE Alu 0 310 133 362 241 12 18 chr3 15049800 15049911 -212474667 - MLT1I LTR MaLR 0 409 318 2518 51 0 3 chr3 15050073 15050368 -212474210 + AluY SINE Alu 1 294 -17 535 243 43 37 chr3 15050507 15050793 -212473785 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 15050939 15050960 -212473618 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 15051084 15051147 -212473431 + (TG)n Simple_repeat Simple_repeat 1 65 0 1901 98 0 0 chr3 15051736 15051972 -212472606 + AluSx SINE Alu 40 275 -37 1874 150 0 62 chr3 15052382 15052702 -212471876 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 15053151 15053309 -212471269 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 15054336 15054624 -212469954 + AluJo SINE Alu 1 296 -16 200 231 0 39 chr3 15054653 15054705 -212469873 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 15055172 15055476 -212469102 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 15056157 15056476 -212468102 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 15056632 15056928 -212467650 + AluY SINE Alu 1 296 -15 2369 67 0 0 chr3 15056979 15057291 -212467287 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15057539 15057697 -212466881 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15058078 15058191 -212466387 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15058416 15058503 -212466075 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 15058798 15058942 -212465636 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 15058946 15059249 -212465329 - AluSx SINE Alu -9 303 1 386 225 70 54 chr3 15059254 15059383 -212465195 - MIR SINE MIR -65 143 12 340 288 144 44 chr3 15059624 15059678 -212464900 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 15059678 15059976 -212464602 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 15059976 15060150 -212464428 + L1ME4a LINE L1 5722 5926 -195 673 217 25 31 chr3 15060174 15060335 -212464243 - MIR SINE MIR -17 245 86 255 221 0 65 chr3 15060533 15060610 -212463968 - MIR SINE MIR -139 123 52 358 238 24 0 chr3 15060989 15061073 -212463505 + MIR SINE MIR 98 183 -79 2353 105 0 0 chr3 15061403 15061709 -212462869 + AluY SINE Alu 1 306 -5 2013 142 13 3 chr3 15061742 15062045 -212462533 - AluJo SINE Alu 0 312 7 2004 139 14 17 chr3 15062063 15062358 -212462220 - AluJb SINE Alu -18 294 1 2316 76 31 3 chr3 15062693 15062983 -212461595 - AluSc SINE Alu -11 298 1 222 349 112 18 chr3 15063192 15063361 -212461217 - MIR SINE MIR -27 235 51 2002 106 0 22 chr3 15063571 15063846 -212460732 + AluSx SINE Alu 44 312 0 364 226 69 0 chr3 15064073 15064175 -212460403 - L1MC5 LINE L1 -35 7926 7818 254 295 32 0 chr3 15064846 15064941 -212459637 - MER113 DNA MER1_type? -415 106 9 402 206 14 78 chr3 15065061 15065202 -212459376 - LTR16B LTR ERVL -4 460 329 231 323 31 23 chr3 15065327 15065457 -212459121 - LTR16B LTR ERVL -331 133 3 2348 105 0 0 chr3 15065615 15065911 -212458667 - AluSx SINE Alu -10 302 7 1587 101 18 0 chr3 15065924 15066141 -212458437 - AluSg/x SINE Alu -19 293 73 210 37 0 0 chr3 15066141 15066168 -212458410 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 672 238 21 0 chr3 15066168 15066311 -212458267 - FRAM SINE Alu -19 147 2 2333 112 3 0 chr3 15066771 15067075 -212457503 + AluSx SINE Alu 1 305 -7 512 225 7 80 chr3 15067245 15067372 -212457206 + MIR SINE MIR 89 205 -57 1601 157 25 46 chr3 15067372 15067542 -212457036 - AluJo SINE Alu -22 290 127 2593 70 0 0 chr3 15067542 15067844 -212456734 + AluY SINE Alu 1 302 -9 1601 157 25 46 chr3 15067844 15067953 -212456625 - AluJo SINE Alu -185 127 17 512 225 7 80 chr3 15067953 15067976 -212456602 + MIR SINE MIR 205 228 -34 297 328 81 15 chr3 15068334 15068532 -212456046 + MIR SINE MIR 40 250 -12 2361 98 0 9 chr3 15068966 15069281 -212455297 - AluSx SINE Alu 0 312 1 182 33 67 0 chr3 15069282 15069312 -212455266 + T-rich Low_complexity Low_complexity 2 33 0 863 167 0 0 chr3 15069315 15069447 -212455131 + AluJb SINE Alu 157 288 -24 652 226 27 21 chr3 15069449 15069635 -212454943 + ORSL DNA AcHobo 89 275 0 833 250 48 0 chr3 15069667 15069875 -212454703 + AluJo SINE Alu 3 220 -92 235 175 0 0 chr3 15069875 15069915 -212454663 + Alu SINE Alu 86 125 -177 2181 111 13 13 chr3 15069916 15070223 -212454355 - AluSx SINE Alu -5 307 1 1905 124 59 0 chr3 15070229 15070502 -212454076 - AluSx SINE Alu -23 289 1 1159 213 8 12 chr3 15071008 15071252 -212453326 - MIR SINE MIR 0 262 20 2306 122 0 0 chr3 15071351 15071663 -212452915 - AluSx SINE Alu 0 312 1 1491 165 36 56 chr3 15071663 15071965 -212452613 - AluJo SINE Alu -15 297 1 23 0 0 0 chr3 15071975 15071998 -212452580 + AT_rich Low_complexity Low_complexity 1 23 0 711 164 16 23 chr3 15072101 15072229 -212452349 + FLAM_C SINE Alu 3 129 -14 2001 147 10 0 chr3 15072247 15072539 -212452039 + AluJb SINE Alu 1 295 -17 2269 113 0 23 chr3 15072539 15072849 -212451729 + AluSx SINE Alu 1 303 -9 25 83 0 0 chr3 15072849 15072909 -212451669 + AT_rich Low_complexity Low_complexity 1 60 0 730 186 0 0 chr3 15072995 15073119 -212451459 - FLAM_C SINE Alu -18 125 2 312 70 0 0 chr3 15073186 15073229 -212451349 + (CA)n Simple_repeat Simple_repeat 2 44 0 262 289 57 63 chr3 15073330 15073489 -212451089 - L2 LINE L2 -41 3231 3074 360 264 28 9 chr3 15074012 15074118 -212450460 + MIR SINE MIR 20 127 -135 557 115 0 0 chr3 15074646 15074724 -212449854 + U6 snRNA snRNA 1 78 -29 354 318 59 6 chr3 15074806 15074976 -212449602 + L1M4 LINE L1 4055 4233 -1913 411 385 50 5 chr3 15075276 15075497 -212449081 - MIR SINE MIR -14 248 18 2437 107 0 0 chr3 15075576 15075886 -212448692 + AluSx SINE Alu 1 310 -2 665 328 26 9 chr3 15076112 15076344 -212448234 - MIR SINE MIR -1 261 26 1855 171 26 0 chr3 15076351 15076655 -212447923 + AluJo SINE Alu 1 312 0 2438 90 0 0 chr3 15076742 15077052 -212447526 - AluY SINE Alu -1 310 1 2282 98 10 0 chr3 15077877 15078174 -212446404 - AluSq SINE Alu -13 300 1 1177 45 0 0 chr3 15078545 15078677 -212445901 + AluY SINE Alu 1 132 -179 2604 66 0 0 chr3 15078683 15078988 -212445590 - AluY SINE Alu -6 305 1 1578 147 105 11 chr3 15078996 15079262 -212445316 - AluJb SINE Alu -21 291 1 1912 102 98 0 chr3 15079359 15079623 -212444955 - AluSx SINE Alu -22 290 1 617 261 101 20 chr3 15080382 15080581 -212443997 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 15080650 15080748 -212443830 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 252 219 78 0 chr3 15080812 15080876 -212443702 - L2 LINE L2 -51 3221 3153 443 174 81 128 chr3 15080973 15081122 -212443456 + MER103 DNA DNA 24 165 -1 2327 117 0 0 chr3 15081490 15081797 -212442781 + AluSx SINE Alu 1 307 -5 275 239 43 11 chr3 15081819 15081911 -212442667 + MIR SINE MIR 60 154 -108 1161 108 0 0 chr3 15082123 15082152 -212442426 + (CCCA)n Simple_repeat Simple_repeat 1 205 0 1161 108 0 0 chr3 15082152 15082328 -212442250 + (CCCA)n Simple_repeat Simple_repeat 3 178 0 448 222 95 16 chr3 15082959 15083085 -212441493 - MIR SINE MIR -116 146 11 2422 85 0 3 chr3 15083359 15083665 -212440913 - AluY SINE Alu -6 305 1 222 305 12 0 chr3 15083705 15083787 -212440791 + (TA)n Simple_repeat Simple_repeat 2 84 0 2080 105 3 86 chr3 15084303 15084628 -212439950 + AluSx SINE Alu 1 298 -14 2285 110 0 7 chr3 15084828 15085127 -212439451 + AluSx SINE Alu 1 297 -15 239 313 114 30 chr3 15085139 15085305 -212439273 - MIR SINE MIR -35 227 48 2463 56 0 3 chr3 15085329 15085615 -212438963 - AluY SINE Alu -5 306 22 316 264 46 47 chr3 15085665 15085798 -212438780 - MIR SINE MIR -68 140 41 27 0 0 0 chr3 15085893 15085920 -212438658 + AT_rich Low_complexity Low_complexity 1 27 0 262 353 85 0 chr3 15086441 15086594 -212437984 + L1ME LINE L1 5534 5699 -422 2279 92 0 26 chr3 15086604 15086908 -212437670 - AluSx SINE Alu -16 296 1 848 206 0 0 chr3 15086940 15087081 -212437497 - FRAM SINE Alu -35 141 1 1796 188 101 3 chr3 15087085 15087463 -212437115 - L1ME1 LINE L1 -62 6104 5690 2201 108 10 10 chr3 15087486 15087792 -212436786 + AluSx SINE Alu 1 306 -6 306 250 32 90 chr3 15087904 15087972 -212436606 + MIR SINE MIR 114 184 -78 811 165 0 88 chr3 15087972 15088154 -212436424 - FRAM SINE Alu 0 166 1 306 250 32 90 chr3 15088154 15088241 -212436337 + MIR SINE MIR 184 260 -2 1037 191 23 56 chr3 15088250 15088409 -212436169 - AluJo SINE Alu -21 291 139 2116 131 3 13 chr3 15088409 15088723 -212435855 - AluSx SINE Alu -1 311 1 1037 191 23 56 chr3 15088723 15088778 -212435800 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 15088811 15088840 -212435738 + AT_rich Low_complexity Low_complexity 1 29 0 2033 151 0 3 chr3 15088962 15089260 -212435318 - AluSx SINE Alu -15 297 1 708 179 8 0 chr3 15089357 15089480 -212435098 - FLAM_C SINE Alu -17 126 3 2561 50 0 3 chr3 15089512 15089811 -212434767 + AluY SINE Alu 1 298 -13 1567 207 4 0 chr3 15090447 15090703 -212433875 + AluJb SINE Alu 1 257 -55 2123 134 0 6 chr3 15090704 15091017 -212433561 - AluSx SINE Alu -1 311 1 24 85 0 0 chr3 15091094 15091153 -212433425 + AT_rich Low_complexity Low_complexity 1 59 0 281 335 26 79 chr3 15091433 15091519 -212433059 - MIR SINE MIR -16 246 170 2014 117 10 45 chr3 15091519 15091827 -212432751 - AluSx SINE Alu -15 297 1 281 335 26 79 chr3 15091827 15091892 -212432686 - MIR SINE MIR -92 170 103 974 142 58 0 chr3 15092972 15093127 -212431451 - AluSg/x SINE Alu -12 298 135 250 274 77 51 chr3 15093365 15093482 -212431096 - MIR3 SINE MIR -25 183 64 487 316 84 15 chr3 15093802 15094007 -212430571 - L2 LINE L2 -341 2973 2745 2352 117 7 0 chr3 15094007 15094315 -212430263 - AluSx SINE Alu -2 310 1 487 316 84 15 chr3 15094315 15094372 -212430206 - L2 LINE L2 -569 2745 2693 1451 239 55 18 chr3 15094441 15094839 -212429739 - MLT1J LTR MaLR 0 511 99 224 326 45 11 chr3 15094870 15094959 -212429619 - L2 LINE L2 -224 3048 2957 281 333 0 60 chr3 15095009 15095159 -212429419 + MIR3 SINE MIR 1 141 -67 2541 71 3 0 chr3 15095193 15095501 -212429077 + AluY SINE Alu 1 309 -2 398 52 0 17 chr3 15095581 15095639 -212428939 + (TG)n Simple_repeat Simple_repeat 1 57 0 198 143 0 0 chr3 15095765 15095800 -212428778 + (CA)n Simple_repeat Simple_repeat 2 36 0 434 251 131 73 chr3 15095963 15096222 -212428356 - MLT1K LTR MaLR -162 426 153 272 313 102 50 chr3 15096751 15097098 -212427480 + L2 LINE L2 2344 2714 -600 2323 78 0 56 chr3 15097098 15097419 -212427159 + AluSx SINE Alu 1 303 -9 272 313 102 50 chr3 15097419 15097455 -212427123 + L2 LINE L2 2714 2747 -567 2326 110 0 3 chr3 15097536 15097837 -212426741 + AluSx SINE Alu 1 300 -12 1425 142 0 9 chr3 15097847 15098059 -212426519 + AluSg SINE Alu 1 210 -100 376 125 0 0 chr3 15098059 15098115 -212426463 + AluSq/x SINE Alu 78 133 -169 2270 104 7 7 chr3 15098129 15098437 -212426141 + AluSq SINE Alu 1 308 -5 225 0 0 0 chr3 15098502 15098527 -212426051 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr3 15098671 15098701 -212425877 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 15098701 15098729 -212425849 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 15098929 15098952 -212425626 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 15099107 15099130 -212425448 + GC_rich Low_complexity Low_complexity 1 23 0 2386 83 0 7 chr3 15099782 15100082 -212424496 - AluY SINE Alu -13 298 1 813 155 0 16 chr3 15100084 15100213 -212424365 - AluJo/FLAM SINE Alu -180 132 6 2261 109 13 10 chr3 15100263 15100574 -212424004 + AluSx SINE Alu 1 312 0 999 167 29 17 chr3 15100584 15100758 -212423820 - AluJb SINE Alu -18 294 119 2280 102 0 0 chr3 15100865 15101174 -212423404 + AluSx SINE Alu 1 309 0 230 265 41 61 chr3 15101695 15101793 -212422785 + MIR3 SINE MIR 110 205 -3 2066 142 0 10 chr3 15101840 15102150 -212422428 - AluSx SINE Alu -5 307 1 306 216 142 68 chr3 15102232 15102394 -212422184 - L1ME4a LINE L1 -2 6119 5946 799 263 31 24 chr3 15102407 15102662 -212421916 + MIR SINE MIR 2 258 -4 496 75 0 0 chr3 15102712 15102779 -212421799 + Alu SINE Alu 2 68 -241 * 542 189 0 0 chr3 15102776 15102866 -212421712 - AluJ/FLAM SINE Alu -221 91 2 320 276 131 14 chr3 15103081 15103226 -212421352 - MIR SINE MIR -55 207 46 442 225 0 42 chr3 15103766 15103886 -212420692 - L2 LINE L2 -19 3294 3180 1679 211 113 43 chr3 15104031 15104462 -212420116 + MLT1D LTR MaLR 1 469 -36 4068 150 75 92 chr3 15104462 15105551 -212419027 + MER11C LTR ERVK 1 1071 0 1679 211 113 43 chr3 15105551 15105589 -212418989 + MLT1D LTR MaLR 469 503 -2 420 209 176 0 chr3 15105593 15105741 -212418837 - L2 LINE L2 -313 3000 2827 1249 146 77 16 chr3 15105827 15105971 -212418607 + L1MB8 LINE L1 5347 5514 -664 2407 106 3 0 chr3 15105971 15106282 -212418296 + AluSx SINE Alu 1 312 0 1249 146 77 16 chr3 15106282 15106383 -212418195 + L1MB8 LINE L1 5514 5607 -571 1418 195 33 0 chr3 15106384 15106625 -212417953 + AluJb SINE Alu 1 249 -63 1968 190 105 9 chr3 15106625 15106766 -212417812 + L1MB8 LINE L1 5679 5805 -373 2447 83 0 3 chr3 15106766 15107066 -212417512 + AluY SINE Alu 1 299 -12 1968 190 105 9 chr3 15107066 15107372 -212417206 + L1MB8 LINE L1 5805 6169 -9 2218 113 10 0 chr3 15107539 15107840 -212416738 + AluSx SINE Alu 3 306 -6 456 167 76 53 chr3 15107884 15108016 -212416562 - MIR SINE MIR -51 211 77 575 114 0 0 chr3 15108369 15108448 -212416130 + AluSq SINE Alu 2 80 -232 2594 49 7 3 chr3 15108452 15108757 -212415821 + AluY SINE Alu 1 306 -5 1670 81 5 5 chr3 15108758 15108968 -212415610 + AluSq SINE Alu 76 285 -28 203 0 37 0 chr3 15109019 15109046 -212415532 + (CA)n Simple_repeat Simple_repeat 2 29 0 418 274 12 118 chr3 15109812 15109900 -212414678 - L2 LINE L2 -2 3311 3215 2388 92 3 0 chr3 15109900 15110203 -212414375 + AluSg SINE Alu 1 304 -6 418 274 12 118 chr3 15110203 15110435 -212414143 - L2 LINE L2 -98 3215 3025 392 233 158 14 chr3 15110430 15110576 -212414002 - L2 LINE L2 -16 3297 3131 * 1269 147 35 56 chr3 15110579 15110619 -212413959 + AluJo SINE Alu 87 126 -186 2456 67 0 20 chr3 15110619 15110917 -212413661 - AluSg SINE Alu -18 292 1 1269 147 35 56 chr3 15110917 15111107 -212413471 + AluJo SINE Alu 126 312 0 1875 141 39 0 chr3 15111247 15111530 -212413048 + AluJo SINE Alu 1 294 -18 278 132 19 0 chr3 15111562 15111615 -212412963 + (TA)n Simple_repeat Simple_repeat 1 54 0 752 215 101 0 chr3 15111616 15111774 -212412804 - MIR SINE MIR -3 259 86 286 294 125 22 chr3 15111863 15111999 -212412579 - MIR SINE MIR -52 210 61 449 300 22 77 chr3 15112026 15112299 -212412279 + MIR SINE MIR 5 262 0 187 303 139 55 chr3 15112298 15112463 -212412115 + MIR SINE MIR 12 190 -72 * 447 226 182 17 chr3 15113118 15113241 -212411337 - MIR SINE MIR -50 212 111 2399 171 88 11 chr3 15113241 15113685 -212410893 + MER66A LTR ERV1 1 478 0 447 226 182 17 chr3 15113685 15113742 -212410836 - MIR SINE MIR -151 111 2 799 232 6 17 chr3 15113913 15114090 -212410488 - MER5B DNA MER1_type 0 178 4 2260 125 0 6 chr3 15114114 15114426 -212410152 + AluSx SINE Alu 1 310 -2 2423 94 3 0 chr3 15114491 15114798 -212409780 - AluSp SINE Alu -5 308 1 2361 91 0 3 chr3 15114972 15115268 -212409310 - AluSc SINE Alu -14 295 1 22 35 0 0 chr3 15115309 15115338 -212409240 + AT_rich Low_complexity Low_complexity 1 29 0 405 251 131 0 chr3 15115397 15115588 -212408990 - L1ME LINE L1 -303 5818 5603 700 146 42 69 chr3 15115601 15115721 -212408857 + FLAM_C SINE Alu 2 124 -83 2289 108 7 0 chr3 15115721 15116016 -212408562 + AluSp SINE Alu 1 297 -16 2561 58 0 6 chr3 15116019 15116330 -212408248 + AluY SINE Alu 1 309 -2 700 146 42 69 chr3 15116330 15116415 -212408163 + FLAM_C SINE Alu 126 207 0 775 153 0 69 chr3 15116416 15116560 -212408018 + AluJo SINE Alu 2 135 -177 2119 125 20 3 chr3 15116562 15116865 -212407713 + AluSx SINE Alu 1 308 -4 793 135 23 23 chr3 15116934 15117067 -212407511 - FLAM_C SINE Alu 0 133 1 1596 129 115 65 chr3 15117334 15117459 -212407119 + THE1C LTR MaLR 1 118 -257 2454 90 0 0 chr3 15117459 15117760 -212406818 - AluSg1 SINE Alu -8 301 1 1596 129 115 65 chr3 15117760 15117990 -212406588 + THE1C LTR MaLR 118 374 -1 884 133 21 0 chr3 15118599 15118742 -212405836 - MER46B DNA MER2_type 0 236 91 1522 178 75 42 chr3 15118742 15119102 -212405476 - MER21A LTR ERV1 0 931 560 330 58 0 39 chr3 15119096 15119148 -212405430 - AluJo SINE Alu -8 294 245 * 923 206 41 0 chr3 15119150 15119320 -212405258 - AluJo SINE Alu -135 177 1 970 137 71 18 chr3 15119320 15119561 -212405017 - MER21B LTR ERV1 -376 487 214 976 145 7 0 chr3 15119566 15119711 -212404867 + AluJo SINE Alu 17 162 -150 328 113 65 0 chr3 15119711 15119773 -212404805 - MER21A LTR ERV1 -863 68 3 736 186 170 0 chr3 15119773 15119961 -212404617 - MER46B DNA MER2_type -141 95 1 2318 102 7 0 chr3 15120153 15120446 -212404132 - AluSq SINE Alu -18 295 1 1922 116 75 17 chr3 15121001 15121158 -212403420 - AluSq SINE Alu -1 312 166 2380 82 0 7 chr3 15121158 15121464 -212403114 - AluY SINE Alu -6 305 2 1922 116 75 17 chr3 15121464 15121599 -212402979 - AluSq SINE Alu -147 166 3 2227 116 7 0 chr3 15121672 15121974 -212402604 + AluY SINE Alu 1 304 -7 2366 97 0 7 chr3 15122071 15122370 -212402208 - AluSx SINE Alu -15 297 1 1727 180 20 7 chr3 15122373 15122667 -212401911 - AluJo SINE Alu -9 303 6 481 259 113 8 chr3 15122780 15123019 -212401559 + L1ME4a LINE L1 5820 6083 -38 1951 109 50 14 chr3 15123273 15123583 -212400995 + AluSq SINE Alu 1 313 0 204 314 157 33 chr3 15123960 15124081 -212400497 - L2 LINE L2 -1 3271 3136 417 222 241 31 chr3 15124823 15125042 -212399536 + MLT1H LTR MaLR 20 192 -357 2019 157 3 3 chr3 15125042 15125354 -212399224 + AluJo SINE Alu 1 312 0 417 222 241 31 chr3 15125354 15125482 -212399096 + MLT1H LTR MaLR 192 292 -257 2007 117 34 14 chr3 15125482 15125773 -212398805 + AluSx SINE Alu 1 297 -15 417 222 241 31 chr3 15125773 15125797 -212398781 + MLT1H LTR MaLR 292 520 -29 1458 204 7 7 chr3 15125842 15126146 -212398432 + AluYa5 SINE Alu 1 304 -7 1733 169 0 24 chr3 15126335 15126631 -212397947 - AluJo SINE Alu -7 305 17 2246 121 7 0 chr3 15126792 15127097 -212397481 + AluSx SINE Alu 1 307 -5 2131 108 3 7 chr3 15127147 15127443 -212397135 + AluSc SINE Alu 1 295 -14 2244 109 0 3 chr3 15127983 15128286 -212396292 + AluY SINE Alu 1 302 -9 604 169 0 0 chr3 15128286 15128375 -212396203 - AluJo/FLAM SINE Alu -187 125 37 508 100 133 33 chr3 15128956 15129046 -212395532 - AluY SINE Alu -29 282 184 240 89 0 0 chr3 15129046 15129091 -212395487 + Alu SINE Alu 256 300 0 2132 136 0 3 chr3 15129102 15129397 -212395181 + AluSx SINE Alu 1 294 -18 1399 73 0 0 chr3 15129959 15130124 -212394454 - AluSg/x SINE Alu -14 298 134 2216 134 0 0 chr3 15130124 15130422 -212394156 - AluSx SINE Alu -14 298 1 984 159 43 19 chr3 15131039 15131247 -212393331 + L1MB7 LINE L1 5925 6137 -47 212 281 0 53 chr3 15131390 15131447 -212393131 + MIR3 SINE MIR 114 167 -41 797 186 117 0 chr3 15131664 15131809 -212392769 - AluSp SINE Alu -17 296 135 2155 79 6 103 chr3 15131810 15132150 -212392428 - AluSx SINE Alu -5 307 1 181 291 38 63 chr3 15132231 15132310 -212392268 - L3b LINE CR1 -80 1503 1427 1685 153 0 62 chr3 15132356 15132663 -212391915 + AluJo SINE Alu 6 293 -19 180 344 49 0 chr3 15132715 15132776 -212391802 - L2 LINE L2 -259 3054 2991 2340 96 3 0 chr3 15133357 15133659 -212390919 - AluSg1 SINE Alu -6 303 1 2437 92 3 0 chr3 15133659 15133962 -212390616 - AluSx SINE Alu -8 304 1 283 198 40 87 chr3 15134059 15134100 -212390478 - MLT1D LTR MaLR 0 505 464 2296 93 0 26 chr3 15134100 15134411 -212390167 + AluSc SINE Alu 1 303 -6 283 198 40 87 chr3 15134411 15134495 -212390083 - MLT1D LTR MaLR -41 464 386 345 246 0 0 chr3 15134515 15134580 -212389998 - AluJ/FLAM SINE Alu -237 65 1 * 1510 241 33 50 chr3 15134580 15135041 -212389537 - MLT1E2 LTR MaLR -133 521 39 2064 127 0 7 chr3 15135041 15135332 -212389246 - AluSx SINE Alu -22 290 2 1510 241 33 50 chr3 15135332 15135359 -212389219 - MLT1E2 LTR MaLR -615 39 13 2423 102 0 0 chr3 15135737 15136041 -212388537 + AluSx SINE Alu 1 304 -8 183 270 80 90 chr3 15137038 15137138 -212387440 - L2 LINE L2 0 3272 3174 2438 57 0 20 chr3 15137233 15137534 -212387044 + AluY SINE Alu 1 295 -16 1953 110 57 11 chr3 15137726 15138007 -212386571 + AluSx SINE Alu 1 294 -18 2205 120 0 10 chr3 15138244 15138543 -212386035 + AluSq SINE Alu 1 296 -17 675 207 9 0 chr3 15138608 15138724 -212385854 + FLAM_A SINE Alu 1 117 -16 1997 142 7 3 chr3 15138885 15139181 -212385397 + AluSx SINE Alu 1 297 -15 2208 99 10 7 chr3 15139194 15139487 -212385091 + AluSg SINE Alu 1 294 -16 2429 89 3 3 chr3 15139577 15139880 -212384698 - AluSp SINE Alu -10 303 1 1256 185 104 57 chr3 15140149 15140446 -212384132 + AluJo SINE Alu 1 311 -1 2323 91 0 0 chr3 15140446 15140777 -212383801 + AluY SINE Alu 1 331 0 893 146 0 33 chr3 15140799 15140950 -212383628 + AluSq/x SINE Alu 1 146 -167 1328 179 9 0 chr3 15140954 15141178 -212383400 + AluJb SINE Alu 85 310 -2 510 158 246 0 chr3 15141870 15141984 -212382594 - FLAM_C SINE Alu 0 143 2 2228 126 0 0 chr3 15142209 15142511 -212382067 - AluSg SINE Alu -8 302 1 219 320 70 39 chr3 15142587 15142715 -212381863 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 15142890 15142914 -212381664 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 15143004 15143142 -212381436 + MIR SINE MIR 50 178 -84 2627 132 110 9 chr3 15143787 15144193 -212380385 + L1MB7 LINE L1 5390 5863 -315 4668 49 26 0 chr3 15144193 15144769 -212379809 + LTR10C LTR ERV1 1 591 0 2627 132 110 9 chr3 15144769 15144891 -212379687 + L1MB7 LINE L1 5863 5971 -207 2187 125 0 13 chr3 15144945 15145249 -212379329 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 15145256 15145310 -212379268 + L1MB7 LINE L1 6119 6175 -9 364 261 91 53 chr3 15145413 15145682 -212378896 - L1MC4a LINE L1 -549 5572 5487 2417 69 0 36 chr3 15145682 15145988 -212378590 - AluY SINE Alu -16 295 1 364 261 91 53 chr3 15145988 15146065 -212378513 - L1MC4a LINE L1 -634 5487 5414 2392 59 24 0 chr3 15146075 15146362 -212378216 - AluY SINE Alu -17 294 1 1938 139 3 7 chr3 15146454 15146757 -212377821 - AluJb SINE Alu -10 302 1 305 219 211 18 chr3 15146757 15146871 -212377707 - L1MC4a LINE L1 -813 5333 5198 1855 105 80 4 chr3 15146873 15147149 -212377429 - AluJb SINE Alu -15 297 1 264 204 19 0 chr3 15147244 15147304 -212377274 + MIR SINE MIR 93 153 -58 22 0 0 0 chr3 15147925 15147947 -212376631 + GC_rich Low_complexity Low_complexity 1 22 0 718 225 23 6 chr3 15148986 15149159 -212375419 - MER5B DNA MER1_type -2 176 1 204 40 0 0 chr3 15149343 15149368 -212375210 + (T)n Simple_repeat Simple_repeat 1 25 0 405 250 56 0 chr3 15149487 15149595 -212374983 - L2 LINE L2 -9 3304 3191 2025 153 0 0 chr3 15150566 15150860 -212373718 - AluSx SINE Alu -18 294 1 1355 155 88 60 chr3 15150884 15151041 -212373537 - AluJo SINE Alu -15 297 127 2496 80 0 0 chr3 15151041 15151343 -212373235 + AluY SINE Alu 1 302 -9 1355 155 88 60 chr3 15151343 15151469 -212373109 - AluJo SINE Alu -185 127 6 1885 124 10 42 chr3 15151868 15152030 -212372548 - AluJo SINE Alu -15 297 148 2496 70 0 3 chr3 15152030 15152331 -212372247 - AluY SINE Alu -11 300 1 1885 124 10 42 chr3 15152331 15152475 -212372103 - AluJo SINE Alu -164 148 1 379 327 0 10 chr3 15152992 15153096 -212371482 - MIR SINE MIR -140 122 20 247 243 214 64 chr3 15153461 15153601 -212370977 - L2 LINE L2 -219 3053 2893 261 286 114 28 chr3 15153657 15153912 -212370666 - L2 LINE L2 -457 2857 2581 219 36 0 0 chr3 15154181 15154209 -212370369 + (CCCCCT)n Simple_repeat Simple_repeat 4 31 0 1727 134 15 22 chr3 15154219 15154488 -212370090 - AluJb SINE Alu -45 267 1 263 219 0 2 chr3 15154547 15154596 -212369982 + MIR SINE MIR 43 90 -118 2019 140 7 3 chr3 15154833 15155125 -212369453 + AluSx SINE Alu 1 293 -19 461 248 26 128 chr3 15155172 15155341 -212369237 + L2 LINE L2 3074 3208 -105 1760 169 0 39 chr3 15155341 15155649 -212368929 - AluJb SINE Alu -16 296 1 461 248 26 128 chr3 15155649 15155745 -212368833 + L2 LINE L2 3208 3312 -1 347 291 64 7 chr3 15155754 15155895 -212368683 + Charlie8 DNA MER1_type 117 265 -2152 1819 125 68 29 chr3 15156186 15156466 -212368112 + AluSx SINE Alu 1 291 -21 225 0 0 0 chr3 15156467 15156492 -212368086 + (TA)n Simple_repeat Simple_repeat 2 26 0 249 146 0 0 chr3 15156507 15156527 -212368051 + (A)n Simple_repeat Simple_repeat 1 20 -35 1909 100 12 0 chr3 15156527 15156777 -212367801 + AluSx SINE Alu 1 253 -59 249 146 0 0 chr3 15156777 15156811 -212367767 + (A)n Simple_repeat Simple_repeat 19 55 0 2420 51 54 0 chr3 15157022 15157317 -212367261 - AluY SINE Alu 0 311 1 1232 123 0 0 chr3 15157450 15157632 -212366946 - AluSg/x SINE Alu 0 299 118 2085 126 10 3 chr3 15157632 15157941 -212366637 - AluSq SINE Alu -2 311 1 1898 164 0 7 chr3 15158041 15158339 -212366239 - AluJb SINE Alu -12 300 5 776 168 8 0 chr3 15158340 15158465 -212366113 - AluJo/FLAM SINE Alu -184 128 3 283 228 22 22 chr3 15158883 15158975 -212365603 + MIR3 SINE MIR 90 181 -27 524 292 65 34 chr3 15160065 15160447 -212364131 - MLT1J LTR MaLR -7 504 73 2362 104 3 0 chr3 15160531 15160838 -212363740 - AluSg SINE Alu -2 308 1 3408 243 125 45 chr3 15160865 15161698 -212362880 - HAL1 LINE L1 -96 2411 1646 2229 114 3 7 chr3 15161698 15161996 -212362582 - AluSx SINE Alu -15 297 1 3408 243 125 45 chr3 15161996 15162052 -212362526 - HAL1 LINE L1 -861 1646 1596 2346 114 0 0 chr3 15162052 15162360 -212362218 - AluSg SINE Alu -2 308 1 3408 243 125 45 chr3 15162360 15163291 -212361287 - HAL1 LINE L1 -911 1596 444 489 255 105 79 chr3 15163294 15163675 -212360903 - HAL1 LINE L1 -2109 398 8 404 298 156 25 chr3 15163681 15163836 -212360742 - HAL1 LINE L1 -1193 1314 1181 2175 123 10 0 chr3 15163836 15164137 -212360441 - AluSx SINE Alu -8 304 1 404 298 156 25 chr3 15164137 15164219 -212360359 - HAL1 LINE L1 -1326 1181 1046 2312 127 0 0 chr3 15164232 15164539 -212360039 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 15164544 15164565 -212360013 + AT_rich Low_complexity Low_complexity 1 21 0 2243 79 3 76 chr3 15164565 15164893 -212359685 + AluY SINE Alu 1 304 -7 306 170 0 0 chr3 15164896 15164943 -212359635 - AluJ/FRAM SINE Alu -35 267 221 662 263 94 69 chr3 15164961 15165395 -212359183 - HAL1 LINE L1 -2029 478 34 463 246 87 43 chr3 15165605 15165743 -212358835 + MIR SINE MIR 1 144 -118 512 241 80 0 chr3 15165805 15165917 -212358661 - MER58A DNA MER1_type 0 161 41 279 203 51 0 chr3 15165922 15165981 -212358597 - HAL1 LINE L1 -2438 69 8 200 241 86 0 chr3 15166017 15166075 -212358503 + MIR SINE MIR 189 251 -11 1975 138 37 3 chr3 15166119 15166417 -212358161 - AluSx SINE Alu -4 308 1 236 234 144 54 chr3 15166625 15166792 -212357786 - L1MC5 LINE L1 -329 7632 7451 318 206 11 43 chr3 15167219 15167311 -212357267 - L1MC5 LINE L1 -36 7925 7837 456 259 40 46 chr3 15167752 15167926 -212356652 + MER5A DNA MER1_type 16 188 -1 559 213 16 16 chr3 15167936 15168058 -212356520 - L2 LINE L2 -4 3309 3188 1166 235 66 54 chr3 15168108 15168606 -212355972 - MLT1H1 LTR MaLR -42 513 10 1884 159 28 0 chr3 15168619 15168902 -212355676 + AluJo SINE Alu 1 291 -21 2091 113 34 7 chr3 15170503 15170796 -212353782 - AluSx SINE Alu -11 301 1 1997 125 0 59 chr3 15170901 15171222 -212353356 - AluSx SINE Alu -10 302 1 1102 156 24 0 chr3 15171299 15171466 -212353112 - AluJb SINE Alu -10 302 132 1330 173 9 101 chr3 15171477 15171795 -212352783 - AluSx SINE Alu -23 289 1 1058 85 0 0 chr3 15171812 15171941 -212352637 + AluSq/x SINE Alu 14 142 -170 1933 129 28 14 chr3 15171944 15172231 -212352347 + AluJb SINE Alu 1 291 -21 839 124 7 51 chr3 15172664 15172801 -212351777 + FLAM_C SINE Alu 1 131 -2 22 35 0 0 chr3 15173151 15173180 -212351398 + AT_rich Low_complexity Low_complexity 1 29 0 262 240 83 0 chr3 15173617 15173713 -212350865 - L1ME LINE L1 -257 5864 5761 2091 108 42 0 chr3 15174174 15174462 -212350116 - AluSx SINE Alu -10 302 3 2002 124 11 3 chr3 15174651 15174963 -212349615 + AluSx SINE Alu 1 314 0 223 226 161 0 chr3 15174989 15175051 -212349527 - L2 LINE L2 0 3313 3242 354 279 215 23 chr3 15175205 15175424 -212349154 + MIR SINE MIR 2 262 0 2348 104 0 0 chr3 15175772 15176070 -212348508 - AluSg SINE Alu -12 298 1 2557 74 0 0 chr3 15180502 15180811 -212343767 - AluY SINE Alu -2 309 1 2117 125 0 0 chr3 15180883 15181164 -212343414 + AluSx SINE Alu 1 281 -31 189 121 0 0 chr3 15181284 15181317 -212343261 + (T)n Simple_repeat Simple_repeat 1 33 0 339 220 189 38 chr3 15181584 15181875 -212342703 - Tigger8 DNA MER2_type -145 521 187 1672 160 0 25 chr3 15181936 15182218 -212342360 - AluSx SINE Alu 0 312 38 360 266 168 53 chr3 15182715 15182924 -212341654 + MIR SINE MIR 1 232 -30 316 297 157 22 chr3 15182960 15183143 -212341435 - MIR SINE MIR -17 245 45 187 208 0 62 chr3 15183176 15183224 -212341354 + L2 LINE L2 3263 3307 -6 284 239 261 0 chr3 15183669 15183761 -212340817 - MER5A DNA MER1_type -35 154 39 212 197 0 33 chr3 15184617 15184678 -212339900 + CT-rich Low_complexity Low_complexity 2 60 0 27 62 0 0 chr3 15184832 15184880 -212339698 + AT_rich Low_complexity Low_complexity 1 48 0 231 279 153 9 chr3 15185169 15185280 -212339298 + MIR SINE MIR 20 146 -62 196 200 0 0 chr3 15185595 15185630 -212338948 - MIR SINE MIR -114 148 114 185 277 210 34 chr3 15185598 15185717 -212338861 - MIR3 SINE MIR -62 146 7 * 321 247 26 0 chr3 15186919 15186996 -212337582 - MIR SINE MIR -79 183 105 243 0 0 0 chr3 15187085 15187112 -212337466 + (T)n Simple_repeat Simple_repeat 1 27 0 240 200 150 0 chr3 15187316 15187396 -212337182 + MIR3 SINE MIR 110 201 -7 368 248 96 41 chr3 15187997 15188163 -212336415 + MIR SINE MIR 14 183 -61 261 203 40 54 chr3 15189139 15189213 -212335365 - MIR SINE MIR -77 131 59 189 250 197 76 chr3 15190172 15190304 -212334274 + MIR3 SINE MIR 35 182 -26 472 289 67 26 chr3 15191273 15191467 -212333111 - MIR3 SINE MIR -2 206 5 684 157 170 7 chr3 15192803 15192956 -212331622 - Tigger1 DNA MER2_type 0 2418 2241 1824 144 7 4 chr3 15192960 15193231 -212331347 - AluJb SINE Alu -23 289 18 522 153 59 0 chr3 15193232 15193317 -212331261 - MER33 DNA MER1_type -208 116 27 300 277 62 54 chr3 15193810 15193940 -212330638 - MER5A DNA MER1_type -22 167 37 399 241 98 0 chr3 15194043 15194176 -212330402 - L1MD3 LINE L1 -86 7909 7764 * 968 290 84 7 chr3 15194154 15194571 -212330007 - L1MEc LINE L1 -4189 2207 1759 704 192 0 0 chr3 15194571 15194696 -212329882 - AluJb SINE Alu -9 303 179 2397 116 0 0 chr3 15194765 15195075 -212329503 - AluSx SINE Alu -2 310 1 909 150 0 21 chr3 15195095 15195235 -212329343 - AluJo SINE Alu -175 137 1 496 213 92 67 chr3 15195238 15195477 -212329101 - L1MEc LINE L1 -4640 1756 1512 2273 96 31 0 chr3 15195485 15195777 -212328801 - AluSg SINE Alu -9 301 1 627 268 174 41 chr3 15195825 15196014 -212328564 - L1MEc LINE L1 -5842 554 391 2416 94 0 0 chr3 15196014 15196321 -212328257 - AluSx SINE Alu -5 307 1 627 268 174 41 chr3 15196321 15196523 -212328055 - L1MEc LINE L1 -6005 391 111 198 0 0 0 chr3 15196560 15196582 -212327996 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7789 22 9 11 chr3 15196583 15197777 -212326801 - L1PA3 LINE L1 0 6155 4963 630 151 126 17 chr3 15197779 15197898 -212326680 - FLAM_C SINE Alu -1 132 1 1801 146 21 7 chr3 15197905 15198185 -212326393 - AluSx SINE Alu -18 294 11 180 294 189 7 chr3 15199430 15199573 -212325005 + MIR SINE MIR 90 258 -4 647 176 146 24 chr3 15200834 15200999 -212323579 + MER5A DNA MER1_type 5 189 0 1980 82 56 43 chr3 15201129 15201434 -212323144 + AluSx SINE Alu 1 309 -3 236 280 0 0 chr3 15201760 15201810 -212322768 + MIR SINE MIR 47 96 -112 1750 170 45 28 chr3 15201881 15202280 -212322298 + L1MB2 LINE L1 5667 6072 -99 505 233 60 0 chr3 15202585 15202718 -212321860 - L1MB2 LINE L1 -3 6168 6028 351 228 114 42 chr3 15202917 15203084 -212321494 + MIR SINE MIR 49 227 -35 244 202 18 83 chr3 15205179 15205288 -212319290 - L1ME3A LINE L1 -109 6061 5960 898 240 106 37 chr3 15205446 15205770 -212318808 - L1MC5 LINE L1 -534 7427 7068 2199 130 51 23 chr3 15205770 15206124 -212318454 + THE1B LTR MaLR 1 364 0 898 240 106 37 chr3 15206124 15206203 -212318375 - L1MC5 LINE L1 -893 7068 6996 861 139 19 51 chr3 15206224 15206382 -212318196 - AluJo/FRAM SINE Alu -16 296 144 2181 106 0 20 chr3 15206383 15206571 -212318007 - AluSx SINE Alu -17 295 114 2115 124 59 31 chr3 15206571 15206925 -212317653 - THE1B LTR MaLR 0 364 1 2181 106 0 20 chr3 15206925 15207037 -212317541 - AluSx SINE Alu -198 114 1 271 287 78 0 chr3 15207098 15207227 -212317351 - HAL1b LINE L1 -684 664 526 418 238 66 33 chr3 15207233 15207255 -212317323 - L1MA10 LINE L1 -1 6333 6312 1189 243 82 50 chr3 15207255 15207964 -212316614 - HAL1b LINE L1 -14 6152 282 851 122 30 15 chr3 15207965 15208096 -212316482 - FLAM_C SINE Alu 0 133 1 2349 96 7 0 chr3 15208100 15208401 -212316177 - AluSx SINE Alu -9 303 1 2697 154 50 21 chr3 15209317 15209373 -212315205 + L1MB7 LINE L1 5386 5439 -745 2306 115 0 10 chr3 15209373 15209685 -212314893 + AluSx SINE Alu 1 309 -3 2697 154 50 21 chr3 15209685 15210153 -212314425 + L1MB7 LINE L1 5439 5925 -259 3136 183 41 17 chr3 15210161 15210799 -212313779 + MER6 DNA MER2_type 30 682 -183 240 306 71 0 chr3 15212047 15212145 -212312433 - MIR SINE MIR -63 145 41 209 280 199 15 chr3 15212505 15212642 -212311936 + MIR SINE MIR 3 173 -89 1727 184 97 35 chr3 15213167 15213287 -212311291 - Charlie4a DNA MER1_type -1457 504 393 920 178 6 6 chr3 15213287 15213444 -212311134 - FRAM SINE Alu -9 157 1 1727 184 97 35 chr3 15213444 15213779 -212310799 - Charlie4a DNA MER1_type -1568 393 21 319 289 194 55 chr3 15214100 15214301 -212310277 - MIR SINE MIR -17 245 17 180 0 0 0 chr3 15214636 15214656 -212309922 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 214 316 25 0 chr3 15215711 15215790 -212308788 + MIR SINE MIR 58 138 -70 451 276 31 31 chr3 15215790 15215899 -212308679 + MIR SINE MIR 100 211 -51 2255 78 3 0 chr3 15215899 15216192 -212308386 + AluSp SINE Alu 16 309 -4 451 276 31 31 chr3 15216192 15216245 -212308333 + MIR SINE MIR 210 262 0 207 261 43 65 chr3 15216252 15216344 -212308234 - MIR SINE MIR -70 192 103 434 325 175 38 chr3 15217355 15217697 -212306881 - L2 LINE L2 0 3272 2884 358 276 48 35 chr3 15218046 15218191 -212306387 + L2 LINE L2 3167 3313 0 308 241 19 37 chr3 15218602 15218710 -212305868 - MIR SINE MIR -71 137 32 302 215 13 0 chr3 15218926 15219005 -212305573 + GA-rich Low_complexity Low_complexity 1 80 0 671 137 30 18 chr3 15219021 15219189 -212305389 + GA-rich Low_complexity Low_complexity 5 174 0 417 213 82 41 chr3 15219747 15219869 -212304709 + MIR SINE MIR 50 176 -86 2064 82 24 10 chr3 15220563 15220854 -212303724 + AluSx SINE Alu 1 295 -17 527 0 16 0 chr3 15220854 15220917 -212303661 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2185 114 0 0 chr3 15221761 15222069 -212302509 - AluSx SINE Alu -4 308 1 289 261 81 36 chr3 15222099 15222210 -212302368 + MIR3 SINE MIR 46 161 -47 443 333 68 5 chr3 15222358 15222550 -212302028 + MIR SINE MIR 5 208 -54 198 135 19 39 chr3 15223059 15223111 -212301467 + MIR SINE MIR 81 131 -77 269 342 68 27 chr3 15224406 15224669 -212299909 + L1M4 LINE L1 4641 4914 -1232 186 43 0 0 chr3 15225420 15225443 -212299135 + (TG)n Simple_repeat Simple_repeat 1 23 0 267 146 0 0 chr3 15227261 15227316 -212297262 + (TA)n Simple_repeat Simple_repeat 2 56 0 201 227 30 45 chr3 15229343 15229409 -212295169 + MIR3 SINE MIR 107 171 -37 * 297 253 24 48 chr3 15229407 15229533 -212295045 + MIR3 SINE MIR 11 131 -91 390 258 89 8 chr3 15235844 15235968 -212288610 + MIR SINE MIR 48 181 -81 478 31 0 0 chr3 15237688 15237753 -212286825 - AluSp/q SINE Alu -6 307 243 345 280 61 30 chr3 15237787 15237919 -212286659 + MIR SINE MIR 10 145 -117 183 189 0 0 chr3 15238754 15238791 -212285787 - MIR3 SINE MIR -22 186 150 841 271 74 13 chr3 15238952 15239251 -212285327 - MER113 DNA MER1_type? -197 324 8 2087 103 7 0 chr3 15240467 15240772 -212283806 - AluSx SINE Alu 0 307 1 252 266 0 0 chr3 15241159 15241238 -212283340 + MIR SINE MIR 68 146 -62 440 218 12 11 chr3 15241297 15241432 -212283146 + MIR SINE MIR 37 149 -59 445 248 6 64 chr3 15241681 15241838 -212282740 + MIR3 SINE MIR 16 163 -45 245 338 55 7 chr3 15242625 15242770 -212281808 - L1ME4a LINE L1 -9 6112 5961 345 195 18 0 chr3 15243856 15243939 -212280639 + MIR SINE MIR 100 183 -62 289 181 66 0 chr3 15244273 15244355 -212280223 + MIR SINE MIR 36 131 -77 1599 153 0 28 chr3 15246937 15247219 -212277359 + AluSx SINE Alu 38 311 -1 357 250 175 27 chr3 15247291 15247583 -212276995 + Tigger8 DNA MER2_type 187 521 -145 198 118 0 0 chr3 15247851 15247885 -212276693 + (A)n Simple_repeat Simple_repeat 1 34 0 945 157 0 0 chr3 15248005 15248158 -212276420 - AluSg/x SINE Alu -31 281 129 2256 100 7 0 chr3 15248844 15249145 -212275433 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 15249533 15249556 -212275022 + (A)n Simple_repeat Simple_repeat 1 23 0 981 112 129 6 chr3 15249699 15249869 -212274709 - AluSq SINE Alu -1 312 122 671 203 0 0 chr3 15251032 15251155 -212273423 - AluSc SINE Alu -185 124 2 2146 98 10 0 chr3 15251527 15251824 -212272754 + AluSq SINE Alu 1 300 -13 2301 90 0 0 chr3 15252646 15252956 -212271622 + AluY SINE Alu 1 310 -1 1295 222 3 7 chr3 15253142 15253426 -212271152 - AluJo SINE Alu -29 283 1 1154 115 81 77 chr3 15253454 15253689 -212270889 - MER46A DNA MER2_type 0 236 1 893 29 0 0 chr3 15253829 15253934 -212270644 - AluSc SINE Alu -204 105 1 1138 178 13 36 chr3 15254173 15254398 -212270180 - AluJo SINE Alu -18 294 75 29 0 0 0 chr3 15254418 15254447 -212270131 + AT_rich Low_complexity Low_complexity 1 29 0 2237 97 0 13 chr3 15254483 15254794 -212269784 + AluSc SINE Alu 2 308 -1 1263 165 0 5 chr3 15255167 15255391 -212269187 - AluY SINE Alu -88 223 1 809 155 0 16 chr3 15255393 15255522 -212269056 - AluJo/FLAM SINE Alu -180 132 6 2121 109 13 10 chr3 15255572 15255883 -212268695 + AluSx SINE Alu 1 312 0 929 171 28 17 chr3 15255891 15256067 -212268511 - AluJb SINE Alu -16 296 119 2153 122 0 0 chr3 15256174 15256485 -212268093 + AluSx SINE Alu 1 311 -1 1460 207 4 0 chr3 15256486 15256742 -212267836 - AluJb SINE Alu -55 257 1 693 260 22 22 chr3 15257316 15257497 -212267081 - AluJo SINE Alu -130 182 2 524 243 138 0 chr3 15257525 15257677 -212266901 + MER96 DNA MER1_type 1 173 -2 397 282 0 10 chr3 15257682 15257785 -212266793 - L2 LINE L2 -32 3281 3180 2191 110 10 0 chr3 15258441 15258750 -212265828 + AluSx SINE Alu 1 312 0 329 300 77 109 chr3 15258861 15259077 -212265501 - L1ME4a LINE L1 -7 6114 5915 1594 154 70 0 chr3 15259077 15259349 -212265229 - AluJo SINE Alu -21 291 1 329 300 77 109 chr3 15259349 15259535 -212265043 - L1ME4a LINE L1 -206 5915 5725 2005 138 0 7 chr3 15259541 15259839 -212264739 - AluSx SINE Alu -16 296 1 802 237 6 17 chr3 15259863 15260040 -212264538 + MER5B DNA MER1_type 4 178 0 1535 142 0 0 chr3 15260268 15260493 -212264085 - MER66A LTR ERV1 0 478 254 680 220 23 8 chr3 15260860 15260992 -212263586 + AluJb SINE Alu 134 267 -45 219 36 0 0 chr3 15261002 15261030 -212263548 + (AGGGGG)n Simple_repeat Simple_repeat 4 31 0 261 286 114 28 chr3 15261299 15261554 -212263024 + L2 LINE L2 2581 2857 -457 217 289 175 57 chr3 15261610 15261804 -212262774 + L2 LINE L2 2893 3109 -163 294 323 58 53 chr3 15262117 15262306 -212262272 + MIR SINE MIR 21 210 -52 895 154 7 7 chr3 15262736 15262879 -212261699 + AluJo SINE Alu 1 143 -169 2456 88 0 3 chr3 15262880 15263186 -212261392 + AluY SINE Alu 1 305 -6 306 170 0 0 chr3 15263189 15263236 -212261342 - AluJ/FRAM SINE Alu -35 267 221 680 260 94 69 chr3 15263254 15263688 -212260890 - HAL1 LINE L1 -2029 478 34 955 118 0 0 chr3 15263826 15263953 -212260625 - AluSq/x SINE Alu -185 127 1 308 156 104 0 chr3 15263968 15264045 -212260533 - L1M LINE L1 -996 5348 5264 235 269 104 0 chr3 15264323 15264390 -212260188 + L2 LINE L2 3149 3222 -50 1561 203 7 7 chr3 15264489 15264790 -212259788 - AluJo SINE Alu -6 306 6 22 0 0 0 chr3 15264795 15264817 -212259761 + AT_rich Low_complexity Low_complexity 1 22 0 404 307 129 6 chr3 15265073 15265236 -212259342 + MIR3 SINE MIR 26 208 0 500 101 0 45 chr3 15265289 15265378 -212259200 - FLAM_C SINE Alu -4 139 55 840 143 0 8 chr3 15265410 15265536 -212259042 + AluJo/FLAM SINE Alu 6 130 -182 2402 86 0 0 chr3 15265536 15265838 -212258740 - AluY SINE Alu -9 302 1 270 330 21 0 chr3 15265985 15266082 -212258496 - L2 LINE L2 -89 3183 3085 2007 103 10 55 chr3 15266312 15266623 -212257955 - AluSx SINE Alu -15 297 1 1932 119 0 4 chr3 15266656 15266924 -212257654 - AluSc SINE Alu -25 284 18 335 377 84 0 chr3 15266948 15267115 -212257463 - L2 LINE L2 -566 2748 2568 1511 154 17 80 chr3 15267381 15267680 -212256898 + AluJo SINE Alu 3 282 -30 772 178 14 115 chr3 15267684 15267892 -212256686 - AluJb SINE Alu -5 307 121 38 0 0 0 chr3 15267941 15267979 -212256599 + AT_rich Low_complexity Low_complexity 1 38 0 1750 170 45 28 chr3 15268131 15268530 -212256048 + L1MB2 LINE L1 5667 6072 -99 513 233 60 0 chr3 15268835 15268968 -212255610 - L1MB2 LINE L1 -3 6168 6028 351 228 114 42 chr3 15269167 15269334 -212255244 + MIR SINE MIR 49 227 -35 255 220 9 73 chr3 15271428 15271537 -212253041 - L1ME3A LINE L1 -109 6061 5960 898 240 106 37 chr3 15271695 15272019 -212252559 - L1MC5 LINE L1 -534 7427 7068 2199 130 51 23 chr3 15272019 15272373 -212252205 + THE1B LTR MaLR 1 364 0 898 240 106 37 chr3 15272373 15272452 -212252126 - L1MC5 LINE L1 -893 7068 6996 846 139 19 57 chr3 15272473 15272631 -212251947 - AluJo/FRAM SINE Alu -17 295 144 2185 106 0 20 chr3 15272632 15272821 -212251757 - AluSx SINE Alu -16 296 114 2124 130 56 31 chr3 15272821 15273176 -212251402 - THE1B LTR MaLR 0 364 1 2185 106 0 20 chr3 15273176 15273288 -212251290 - AluSx SINE Alu -198 114 1 271 287 78 0 chr3 15273349 15273478 -212251100 - HAL1b LINE L1 -684 664 526 418 238 66 33 chr3 15273484 15273506 -212251072 - L1MA10 LINE L1 -1 6333 6312 1189 240 85 51 chr3 15273506 15274204 -212250374 - HAL1b LINE L1 -14 6152 292 1050 87 14 0 chr3 15274211 15274349 -212250229 - FLAM_C SINE Alu -3 140 1 2229 106 10 10 chr3 15274349 15274518 -212250060 - AluSq SINE Alu -10 303 132 2423 83 10 0 chr3 15274518 15274818 -212249760 - AluY SINE Alu -8 303 1 2229 106 10 10 chr3 15274818 15274951 -212249627 - AluSq SINE Alu -180 133 1 1414 113 0 0 chr3 15274951 15275137 -212249441 + AluSg/x SINE Alu 109 294 -16 1920 160 76 78 chr3 15275148 15275647 -212248931 - MER11A LTR ERVK -738 528 31 1884 159 28 0 chr3 15276390 15276673 -212247905 - AluJo SINE Alu -21 291 1 1166 235 66 54 chr3 15276686 15277184 -212247394 + MLT1H1 LTR MaLR 10 513 -42 559 213 16 16 chr3 15277234 15277356 -212247222 + L2 LINE L2 3188 3309 -4 455 259 40 46 chr3 15277366 15277540 -212247038 - MER5A DNA MER1_type -1 188 16 330 196 11 43 chr3 15277981 15278073 -212246505 + L1MC5 LINE L1 7837 7925 -36 396 240 123 58 chr3 15278500 15278671 -212245907 + L1MC5 LINE L1 7451 7632 -329 1902 142 38 3 chr3 15278879 15279168 -212245410 + AluSx SINE Alu 1 299 -13 200 241 86 0 chr3 15279212 15279270 -212245308 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 15279306 15279365 -212245213 + HAL1 LINE L1 8 69 -2438 512 241 80 0 chr3 15279370 15279482 -212245096 + MER58A DNA MER1_type 41 161 0 463 246 87 43 chr3 15279544 15279682 -212244896 - MIR SINE MIR -118 144 1 636 257 96 76 chr3 15279892 15280328 -212244250 + HAL1 LINE L1 34 478 -2029 277 200 20 0 chr3 15280343 15280393 -212244185 + AluJ/FRAM SINE Alu 217 267 -35 2104 148 0 0 chr3 15280396 15280699 -212243879 - AluSx SINE Alu -9 303 1 433 380 54 0 chr3 15280794 15280999 -212243579 + MIR SINE MIR 33 248 -14 337 318 59 6 chr3 15281299 15281469 -212243109 - L1M4 LINE L1 -1913 4233 4055 553 115 0 0 chr3 15281551 15281629 -212242949 - U6 snRNA snRNA -29 78 1 387 264 28 9 chr3 15282157 15282263 -212242315 - MIR SINE MIR -135 127 20 276 303 94 59 chr3 15282691 15282945 -212241633 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 15283046 15283089 -212241489 + (TG)n Simple_repeat Simple_repeat 2 44 0 782 186 0 0 chr3 15283156 15283280 -212241298 + FLAM_C SINE Alu 2 125 -18 25 83 0 0 chr3 15283366 15283426 -212241152 + AT_rich Low_complexity Low_complexity 1 60 0 2263 113 0 23 chr3 15283426 15283736 -212240842 - AluSx SINE Alu -9 303 1 1994 147 10 0 chr3 15283736 15284028 -212240550 - AluJb SINE Alu -17 295 1 764 164 16 23 chr3 15284046 15284174 -212240404 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 15284277 15284300 -212240278 + AT_rich Low_complexity Low_complexity 1 23 0 1487 165 36 56 chr3 15284310 15284613 -212239965 + AluJo SINE Alu 1 297 -15 2302 122 0 0 chr3 15284613 15284924 -212239654 + AluSx SINE Alu 1 312 0 1224 213 8 12 chr3 15285023 15285267 -212239311 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 15285755 15285773 -212238805 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 15285773 15286077 -212238501 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 15286077 15286229 -212238349 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 15286270 15286344 -212238234 - MIR SINE MIR -64 144 64 416 70 18 0 chr3 15286426 15286483 -212238095 + MER30B DNA MER1_type 1 58 -132 1963 115 0 0 chr3 15286604 15286857 -212237721 - AluSg SINE Alu -57 253 1 1518 239 152 43 chr3 15286869 15287788 -212236790 - HAL1 LINE L1 -1045 1462 444 489 255 105 79 chr3 15287791 15288172 -212236406 - HAL1 LINE L1 -2109 398 8 301 257 202 0 chr3 15288178 15288287 -212236291 - HAL1 LINE L1 -1193 1314 1184 2160 126 10 0 chr3 15288333 15288634 -212235944 - AluSx SINE Alu -8 304 1 679 261 101 20 chr3 15289394 15289593 -212234985 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 15289662 15289760 -212234818 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 274 219 78 0 chr3 15289824 15289888 -212234690 - L2 LINE L2 -51 3221 3153 433 181 81 128 chr3 15289985 15290134 -212234444 + MER103 DNA DNA 24 165 -1 2239 120 0 0 chr3 15290502 15290802 -212233776 + AluSx SINE Alu 1 300 -12 262 232 229 3 chr3 15290871 15291046 -212233532 - MIR SINE MIR -25 237 16 340 58 115 0 chr3 15291184 15291236 -212233342 + L1ME2 LINE L1 6093 6150 -14 2548 77 0 3 chr3 15291240 15291552 -212233026 - AluY SINE Alu 0 311 1 2264 113 0 7 chr3 15291766 15292066 -212232512 - AluSx SINE Alu -14 298 1 246 214 0 0 chr3 15292066 15292122 -212232456 - L1M3 LINE L1 -739 5441 5386 1044 78 8 0 chr3 15293038 15293167 -212231411 + AluSq/x SINE Alu 1 130 -182 2557 56 3 0 chr3 15293167 15293473 -212231105 + AluY SINE Alu 1 307 -4 2413 97 0 3 chr3 15293479 15293790 -212230788 + AluSx SINE Alu 1 310 -2 216 0 0 0 chr3 15293937 15293961 -212230617 + (T)n Simple_repeat Simple_repeat 1 24 0 1192 164 0 25 chr3 15294171 15294339 -212230239 - AluJo SINE Alu -11 301 130 222 37 0 0 chr3 15294339 15294366 -212230212 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2323 82 0 0 chr3 15294366 15294648 -212229930 - AluY SINE Alu -29 282 1 1192 164 0 25 chr3 15294648 15294679 -212229899 - AluJo SINE Alu -180 132 106 2242 54 58 0 chr3 15294679 15294957 -212229621 - AluY SINE Alu -17 294 1 1232 123 0 0 chr3 15295090 15295272 -212229306 - AluSg/x SINE Alu 0 299 118 2137 125 6 3 chr3 15295272 15295583 -212228995 - AluSq SINE Alu -1 312 1 1918 161 0 7 chr3 15295683 15295981 -212228597 - AluJb SINE Alu -12 300 5 799 160 8 0 chr3 15295982 15296107 -212228471 - AluJo/FLAM SINE Alu -184 128 3 283 228 22 22 chr3 15296525 15296617 -212227961 + MIR3 SINE MIR 90 181 -27 524 292 65 34 chr3 15297707 15298089 -212226489 - MLT1J LTR MaLR -7 504 73 909 144 0 0 chr3 15298335 15298474 -212226104 + AluSg/x SINE Alu 172 310 0 1918 149 0 30 chr3 15298579 15298874 -212225704 - AluSx SINE Alu -26 286 1 1031 118 7 0 chr3 15298874 15299009 -212225569 - AluSq/x SINE Alu -176 136 1 596 310 101 39 chr3 15299016 15299469 -212225109 - L2 LINE L2 -17 3296 2737 204 365 56 24 chr3 15299982 15300108 -212224470 + MIR SINE MIR 23 152 -56 * 523 224 35 9 chr3 15300072 15300188 -212224390 - MIR SINE MIR -106 156 38 1235 140 0 0 chr3 15300317 15300495 -212224083 - AluSg/x SINE Alu 0 310 133 356 241 12 18 chr3 15300788 15300899 -212223679 - MLT1I LTR MaLR 0 409 318 2380 93 0 10 chr3 15301061 15301372 -212223206 + AluY SINE Alu 1 308 -3 2607 150 56 0 chr3 15301373 15301840 -212222738 + L1MB7 LINE L1 5433 5925 -259 3084 185 41 19 chr3 15301848 15302487 -212222091 + MER6 DNA MER2_type 30 682 -183 245 259 86 0 chr3 15303735 15303816 -212220762 - MIR SINE MIR -63 145 58 233 285 197 15 chr3 15304193 15304330 -212220248 + MIR SINE MIR 3 173 -89 1720 184 97 35 chr3 15304855 15304975 -212219603 - Charlie4a DNA MER1_type -1457 504 393 924 178 6 6 chr3 15304975 15305132 -212219446 - FRAM SINE Alu -9 157 1 1720 184 97 35 chr3 15305132 15305467 -212219111 - Charlie4a DNA MER1_type -1568 393 21 346 249 214 75 chr3 15305788 15305989 -212218589 - MIR SINE MIR -17 245 17 180 0 0 0 chr3 15306324 15306344 -212218234 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 225 301 24 12 chr3 15307395 15307478 -212217100 + MIR SINE MIR 55 138 -70 482 276 31 31 chr3 15307478 15307587 -212216991 + MIR SINE MIR 100 211 -51 2378 78 3 0 chr3 15307587 15307880 -212216698 + AluSp SINE Alu 16 309 -4 482 276 31 31 chr3 15307880 15307933 -212216645 + MIR SINE MIR 210 262 0 230 257 57 67 chr3 15307940 15308045 -212216533 - MIR SINE MIR -70 192 89 532 282 196 49 chr3 15309043 15309390 -212215188 - L2 LINE L2 0 3272 2875 381 270 51 51 chr3 15309742 15309879 -212214699 + L2 LINE L2 3136 3272 0 333 241 19 37 chr3 15310290 15310398 -212214180 - MIR SINE MIR -71 137 32 396 240 123 58 chr3 15510670 15510841 -212013737 - L1MC5 LINE L1 -329 7632 7451 330 196 11 43 chr3 15511268 15511360 -212013218 - L1MC5 LINE L1 -36 7925 7837 455 259 40 46 chr3 15511801 15511975 -212012603 + MER5A DNA MER1_type 16 188 -1 559 213 16 16 chr3 15511985 15512107 -212012471 - L2 LINE L2 -4 3309 3188 1166 235 66 54 chr3 15512157 15512655 -212011923 - MLT1H1 LTR MaLR -42 513 10 1884 159 28 0 chr3 15512668 15512951 -212011627 + AluJo SINE Alu 1 291 -21 2067 104 36 7 chr3 15514565 15514845 -212009733 - AluSx SINE Alu -24 288 1 2052 125 0 29 chr3 15514950 15515261 -212009317 - AluSx SINE Alu -10 302 1 1102 156 24 0 chr3 15515338 15515505 -212009073 - AluJb SINE Alu -10 302 132 1308 176 9 101 chr3 15515516 15515834 -212008744 - AluSx SINE Alu -23 289 1 1058 85 0 0 chr3 15515851 15515980 -212008598 + AluSq/x SINE Alu 14 142 -170 1933 129 28 14 chr3 15515983 15516270 -212008308 + AluJb SINE Alu 1 291 -21 839 124 7 51 chr3 15516703 15516840 -212007738 + FLAM_C SINE Alu 1 131 -2 22 35 0 0 chr3 15517190 15517219 -212007359 + AT_rich Low_complexity Low_complexity 1 29 0 238 241 81 0 chr3 15517664 15517751 -212006827 - L1ME LINE L1 -267 5854 5761 2091 108 42 0 chr3 15518213 15518501 -212006077 - AluSx SINE Alu -10 302 3 228 35 0 0 chr3 15518819 15518848 -212005730 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 223 226 161 0 chr3 15518874 15518936 -212005642 - L2 LINE L2 0 3313 3242 333 283 215 23 chr3 15519090 15519309 -212005269 + MIR SINE MIR 2 262 0 2353 102 0 0 chr3 15519661 15519956 -212004622 - AluSg SINE Alu -15 295 1 2291 130 0 0 chr3 15524054 15524361 -212000217 + AluSx SINE Alu 1 307 -5 394 275 163 42 chr3 15524372 15524456 -212000122 + HAL1 LINE L1 1046 1118 -1389 2077 133 10 0 chr3 15524456 15524757 -211999821 + AluSx SINE Alu 1 304 -8 394 275 163 42 chr3 15524757 15524912 -211999666 + HAL1 LINE L1 1118 1314 -1193 962 264 174 50 chr3 15524918 15525701 -211998877 + HAL1 LINE L1 8 887 -1620 602 208 121 65 chr3 15525901 15526109 -211998469 + HAL1 LINE L1 1243 1438 -1069 2334 117 0 0 chr3 15526109 15526417 -211998161 + AluSg SINE Alu 1 308 -2 602 208 121 65 chr3 15526417 15526473 -211998105 + HAL1 LINE L1 1438 1489 -1018 2280 114 3 7 chr3 15526473 15526780 -211997798 + AluSx SINE Alu 1 306 -6 602 208 121 65 chr3 15526780 15526836 -211997742 + HAL1 LINE L1 1489 1582 -925 339 220 189 38 chr3 15527127 15527418 -211997160 - Tigger8 DNA MER2_type -145 521 187 1626 159 0 28 chr3 15527479 15527762 -211996816 - AluSx SINE Alu 0 312 38 1935 145 37 3 chr3 15528244 15528541 -211996037 + AluSx SINE Alu 1 307 -5 214 224 86 0 chr3 15528586 15528644 -211995934 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 15528680 15528739 -211995839 + HAL1 LINE L1 8 69 -2438 498 250 80 0 chr3 15528744 15528856 -211995722 + MER58A DNA MER1_type 41 161 0 463 246 87 43 chr3 15528918 15529056 -211995522 - MIR SINE MIR -118 144 1 360 266 168 53 chr3 15529647 15529856 -211994722 + MIR SINE MIR 1 232 -30 316 297 157 22 chr3 15529892 15530075 -211994503 - MIR SINE MIR -17 245 45 187 208 0 62 chr3 15530108 15530156 -211994422 + L2 LINE L2 3263 3307 -6 284 239 261 0 chr3 15530601 15530693 -211993885 - MER5A DNA MER1_type -35 154 39 212 197 0 33 chr3 15531549 15531610 -211992968 + CT-rich Low_complexity Low_complexity 2 60 0 27 62 0 0 chr3 15531764 15531812 -211992766 + AT_rich Low_complexity Low_complexity 1 48 0 231 279 153 9 chr3 15532101 15532212 -211992366 + MIR SINE MIR 20 146 -62 196 200 0 0 chr3 15532527 15532562 -211992016 - MIR SINE MIR -114 148 114 185 277 210 34 chr3 15532530 15532649 -211991929 - MIR3 SINE MIR -62 146 7 * 321 247 26 0 chr3 15533853 15533930 -211990648 - MIR SINE MIR -79 183 105 243 0 0 0 chr3 15534019 15534046 -211990532 + (T)n Simple_repeat Simple_repeat 1 27 0 240 200 150 0 chr3 15534250 15534330 -211990248 + MIR3 SINE MIR 110 201 -7 384 241 96 41 chr3 15534931 15535097 -211989481 + MIR SINE MIR 14 183 -61 261 203 40 54 chr3 15536073 15536147 -211988431 - MIR SINE MIR -77 131 59 189 250 197 76 chr3 15537106 15537238 -211987340 + MIR3 SINE MIR 35 182 -26 472 289 67 26 chr3 15538207 15538401 -211986177 - MIR3 SINE MIR -2 206 5 684 157 170 7 chr3 15539737 15539890 -211984688 - Tigger1 DNA MER2_type 0 2418 2241 1824 144 7 4 chr3 15539894 15540165 -211984413 - AluJb SINE Alu -23 289 18 522 153 59 0 chr3 15540166 15540251 -211984327 - MER33 DNA MER1_type -208 116 27 300 277 62 54 chr3 15540745 15540875 -211983703 - MER5A DNA MER1_type -22 167 37 399 241 98 0 chr3 15540978 15541111 -211983467 - L1MD3 LINE L1 -86 7909 7764 * 968 290 84 7 chr3 15541089 15541506 -211983072 - L1MEc LINE L1 -4189 2207 1759 704 192 0 0 chr3 15541506 15541631 -211982947 - AluJb SINE Alu -9 303 179 2384 119 0 0 chr3 15541700 15542010 -211982568 - AluSx SINE Alu -2 310 1 909 150 0 21 chr3 15542030 15542170 -211982408 - AluJo SINE Alu -175 137 1 496 213 92 67 chr3 15542173 15542412 -211982166 - L1MEc LINE L1 -4640 1756 1512 2268 89 31 3 chr3 15542420 15542712 -211981866 - AluSg1 SINE Alu -9 300 1 627 268 174 41 chr3 15542760 15542949 -211981629 - L1MEc LINE L1 -5842 554 391 2416 94 0 0 chr3 15542949 15543256 -211981322 - AluSx SINE Alu -5 307 1 627 268 174 41 chr3 15543256 15543458 -211981120 - L1MEc LINE L1 -6005 391 111 198 0 0 0 chr3 15543495 15543517 -211981061 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7789 22 9 11 chr3 15543518 15544712 -211979866 - L1PA3 LINE L1 0 6155 4963 630 151 126 17 chr3 15544714 15544833 -211979745 - FLAM_C SINE Alu -1 132 1 1801 146 21 7 chr3 15544840 15545120 -211979458 - AluSx SINE Alu -18 294 11 180 294 189 7 chr3 15546365 15546508 -211978070 + MIR SINE MIR 90 258 -4 647 176 146 24 chr3 15547769 15547934 -211976644 + MER5A DNA MER1_type 5 189 0 1980 82 56 43 chr3 15548064 15548369 -211976209 + AluSx SINE Alu 1 309 -3 236 280 0 0 chr3 15548695 15548745 -211975833 + MIR SINE MIR 47 96 -112 1615 186 40 32 chr3 15548816 15549219 -211975359 + L1MB2 LINE L1 5667 6072 -99 505 233 60 0 chr3 15549524 15549657 -211974921 - L1MB2 LINE L1 -3 6168 6028 351 228 114 42 chr3 15549856 15550023 -211974555 + MIR SINE MIR 49 227 -35 244 202 18 83 chr3 15552118 15552227 -211972351 - L1ME3A LINE L1 -109 6061 5960 898 240 106 37 chr3 15552385 15552709 -211971869 - L1MC5 LINE L1 -534 7427 7068 2199 130 51 23 chr3 15552709 15553063 -211971515 + THE1B LTR MaLR 1 364 0 898 240 106 37 chr3 15553063 15553142 -211971436 - L1MC5 LINE L1 -893 7068 6996 861 139 19 51 chr3 15553163 15553321 -211971257 - AluJo/FRAM SINE Alu -16 296 144 2086 120 0 20 chr3 15553322 15553510 -211971068 - AluSx SINE Alu -17 295 114 1957 147 59 31 chr3 15553510 15553864 -211970714 - THE1B LTR MaLR 0 364 1 2086 120 0 20 chr3 15553864 15553976 -211970602 - AluSx SINE Alu -198 114 1 257 281 86 0 chr3 15554038 15554166 -211970412 - HAL1b LINE L1 -684 664 526 418 238 66 33 chr3 15554172 15554194 -211970384 - L1MA10 LINE L1 -1 6333 6312 1189 243 82 50 chr3 15554194 15554903 -211969675 - HAL1b LINE L1 -14 6152 282 851 122 30 15 chr3 15554904 15555035 -211969543 - FLAM_C SINE Alu 0 133 1 2349 96 7 0 chr3 15555039 15555340 -211969238 - AluSx SINE Alu -9 303 1 2697 154 50 21 chr3 15556256 15556312 -211968266 + L1MB7 LINE L1 5386 5439 -745 2306 115 0 10 chr3 15556312 15556624 -211967954 + AluSx SINE Alu 1 309 -3 2697 154 50 21 chr3 15556624 15557092 -211967486 + L1MB7 LINE L1 5439 5925 -259 3136 183 41 17 chr3 15557100 15557738 -211966840 + MER6 DNA MER2_type 30 682 -183 245 259 86 0 chr3 15558986 15559067 -211965511 - MIR SINE MIR -63 145 58 233 285 197 15 chr3 15559444 15559581 -211964997 + MIR SINE MIR 3 173 -89 1707 184 97 35 chr3 15560106 15560226 -211964352 - Charlie4a DNA MER1_type -1457 504 393 924 178 6 6 chr3 15560226 15560383 -211964195 - FRAM SINE Alu -9 157 1 1707 184 97 35 chr3 15560383 15560718 -211963860 - Charlie4a DNA MER1_type -1568 393 21 332 289 194 55 chr3 15561039 15561240 -211963338 - MIR SINE MIR -17 245 17 180 0 0 0 chr3 15561575 15561595 -211962983 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 211 316 25 0 chr3 15562650 15562729 -211961849 + MIR SINE MIR 58 138 -70 474 308 31 6 chr3 15562733 15562838 -211961740 + MIR SINE MIR 100 212 -50 2271 78 3 0 chr3 15562838 15563131 -211961447 + AluSp SINE Alu 16 309 -4 474 308 31 6 chr3 15563131 15563184 -211961394 + MIR SINE MIR 212 262 0 211 276 48 57 chr3 15563191 15563296 -211961282 - MIR SINE MIR -70 192 89 470 325 175 38 chr3 15564294 15564636 -211959942 - L2 LINE L2 0 3272 2884 373 276 48 35 chr3 15564985 15565130 -211959448 + L2 LINE L2 3167 3313 0 313 241 19 37 chr3 15565541 15565649 -211958929 - MIR SINE MIR -71 137 32 326 195 13 0 chr3 15565865 15565942 -211958636 + GA-rich Low_complexity Low_complexity 1 78 0 671 137 30 18 chr3 15565958 15566126 -211958452 + GA-rich Low_complexity Low_complexity 5 174 0 434 281 47 8 chr3 15566684 15566812 -211957766 + MIR SINE MIR 50 182 -80 2090 82 24 10 chr3 15567500 15567791 -211956787 + AluSx SINE Alu 1 295 -17 527 0 16 0 chr3 15567791 15567854 -211956724 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 182 180 220 0 chr3 15568373 15568423 -211956155 + MIR SINE MIR 89 149 -113 2211 114 0 0 chr3 15568698 15569006 -211955572 - AluSx SINE Alu -4 308 1 296 261 81 36 chr3 15569036 15569147 -211955431 + MIR3 SINE MIR 46 161 -47 464 333 68 5 chr3 15569295 15569487 -211955091 + MIR SINE MIR 5 208 -54 205 135 19 39 chr3 15569996 15570048 -211954530 + MIR SINE MIR 81 131 -77 233 342 68 27 chr3 15571343 15571606 -211952972 + L1M4 LINE L1 4641 4914 -1232 186 43 0 0 chr3 15572356 15572379 -211952199 + (TG)n Simple_repeat Simple_repeat 1 23 0 303 307 44 92 chr3 15574107 15574335 -211950243 + L1MCa LINE L1 1923 2139 -4287 306 323 0 42 chr3 15574198 15574294 -211950284 - L1MC4 LINE L1 -1363 6679 6588 217 243 29 43 chr3 15576274 15576344 -211948234 + MIR3 SINE MIR 103 171 -37 * 312 253 24 48 chr3 15576342 15576468 -211948110 + MIR3 SINE MIR 11 131 -91 185 257 0 0 chr3 15577405 15577440 -211947138 + MIR SINE MIR 117 151 -111 405 239 76 52 chr3 15582745 15582903 -211941675 + MIR SINE MIR 21 181 -63 467 31 0 0 chr3 15584622 15584687 -211939891 - AluSp/q SINE Alu -6 307 243 365 281 65 29 chr3 15584714 15584853 -211939725 + MIR SINE MIR 2 145 -117 188 189 0 0 chr3 15585688 15585725 -211938853 - MIR3 SINE MIR -22 186 150 784 271 74 13 chr3 15585886 15586185 -211938393 - MER113 DNA MER1_type? -197 324 8 2130 100 7 0 chr3 15587401 15587706 -211936872 - AluSx SINE Alu 0 307 1 272 266 0 0 chr3 15588093 15588172 -211936406 + MIR SINE MIR 68 146 -62 457 218 12 11 chr3 15588231 15588366 -211936212 + MIR SINE MIR 37 149 -59 465 248 6 64 chr3 15588615 15588772 -211935806 + MIR3 SINE MIR 16 163 -45 230 338 55 7 chr3 15589559 15589704 -211934874 - L1ME4a LINE L1 -9 6112 5961 354 195 18 0 chr3 15590790 15590873 -211933705 + MIR SINE MIR 100 183 -62 296 204 61 0 chr3 15591207 15591293 -211933285 + MIR SINE MIR 36 135 -73 192 311 173 33 chr3 15592947 15593374 -211931204 + L2 LINE L2 2478 2964 -350 377 340 15 0 chr3 15593937 15594134 -211930444 + L2 LINE L2 1893 2092 -1222 184 283 0 0 chr3 15594943 15594989 -211929589 + L2 LINE L2 3268 3313 0 434 161 74 0 chr3 15595163 15595244 -211929334 - MIR SINE MIR -65 143 57 1995 153 0 6 chr3 15595267 15595581 -211928997 + AluJo SINE Alu 1 312 0 220 261 31 0 chr3 15596341 15596406 -211928172 - MIR SINE MIR -80 128 62 362 277 115 0 chr3 15596812 15596942 -211927636 - MER117 DNA MER1_type -14 183 39 1866 194 87 27 chr3 15597686 15598124 -211926454 + MLT1C LTR MaLR 4 467 0 296 303 91 8 chr3 15598526 15598658 -211925920 + L3 LINE CR1 1336 1478 -99 371 386 29 6 chr3 15599011 15599182 -211925396 - L3 LINE CR1 -16 1561 1387 232 248 101 28 chr3 15599458 15599567 -211925011 - L2 LINE L2 -23 3249 3133 268 269 45 0 chr3 15599941 15600008 -211924570 + MIR SINE MIR 114 183 -79 215 358 60 7 chr3 15600108 15600259 -211924319 + L2 LINE L2 2899 3057 -215 21 0 0 0 chr3 15600452 15600473 -211924105 + AT_rich Low_complexity Low_complexity 1 21 0 212 289 333 0 chr3 15601331 15601421 -211923157 - MIR3 SINE MIR -52 156 37 374 261 111 20 chr3 15601589 15601742 -211922836 - MIR3 SINE MIR -16 192 26 339 25 0 0 chr3 15601888 15601928 -211922650 + (TG)n Simple_repeat Simple_repeat 1 40 0 285 294 137 0 chr3 15601949 15602051 -211922527 + MIR SINE MIR 31 146 -62 653 238 119 18 chr3 15602073 15602300 -211922278 - MER112 DNA MER1_type 0 260 11 279 0 0 0 chr3 15602704 15602735 -211921843 + (GA)n Simple_repeat Simple_repeat 1 31 0 227 281 16 16 chr3 15602785 15602849 -211921729 - L2 LINE L2 0 3272 3209 493 300 87 43 chr3 15602907 15603137 -211921441 - MIR SINE MIR -7 255 16 402 313 45 0 chr3 15603201 15603335 -211921243 - MIR3 SINE MIR -7 201 62 298 149 0 0 chr3 15604320 15604367 -211920211 - MIR SINE MIR -76 132 86 758 233 11 28 chr3 15604948 15605128 -211919450 - MER5B DNA MER1_type -1 177 1 297 225 28 0 chr3 15605132 15605203 -211919375 - MIR3 SINE MIR -50 158 86 1857 234 51 18 chr3 15606326 15606873 -211917705 - L1MD2 LINE L1 -9 6350 5786 438 150 12 12 chr3 15606896 15606976 -211917602 - MER116 DNA Mariner 0 80 1 566 128 0 0 chr3 15606980 15607058 -211917520 - AluS SINE Alu -235 78 1 251 242 81 10 chr3 15607081 15607180 -211917398 - L1ME LINE L1 -304 5866 5761 326 341 45 11 chr3 15607329 15607505 -211917073 + L2 LINE L2 2871 3052 -220 275 345 12 0 chr3 15607538 15607622 -211916956 + L2 LINE L2 3188 3272 0 275 226 0 0 chr3 15608222 15608275 -211916303 + MIR3 SINE MIR 116 168 -40 384 279 6 62 chr3 15608533 15608690 -211915888 - L1MCa LINE L1 -1339 6983 2001 196 369 31 56 chr3 15609051 15609211 -211915367 - MIR SINE MIR -74 188 33 3786 169 31 12 chr3 15609425 15610143 -211914435 + L1MB3 LINE L1 5453 6183 0 2058 136 0 13 chr3 15610169 15610485 -211914093 + AluSx SINE Alu 1 312 0 353 365 79 20 chr3 15610698 15610901 -211913677 - MIR SINE MIR -21 241 27 423 127 63 35 chr3 15611330 15611845 -211912733 + (TG)n Simple_repeat Simple_repeat 1 529 0 258 189 21 32 chr3 15611853 15611948 -211912630 + (TTGTG)n Simple_repeat Simple_repeat 1 94 0 198 118 0 0 chr3 15612148 15612182 -211912396 + (T)n Simple_repeat Simple_repeat 1 34 0 404 276 174 36 chr3 15612320 15612740 -211911838 - Tigger8 DNA MER2_type -2 664 187 1429 164 0 45 chr3 15612812 15613099 -211911479 - AluSx SINE Alu -1 311 38 2100 100 7 0 chr3 15613922 15614227 -211910351 - AluSx SINE Alu 0 307 1 253 260 0 0 chr3 15614620 15614693 -211909885 + MIR SINE MIR 74 146 -62 440 218 12 11 chr3 15614752 15614887 -211909691 + MIR SINE MIR 37 149 -59 445 248 6 64 chr3 15615136 15615293 -211909285 + MIR3 SINE MIR 16 163 -45 245 338 55 7 chr3 15616080 15616225 -211908353 - L1ME4a LINE L1 -9 6112 5961 345 195 18 0 chr3 15617311 15617394 -211907184 + MIR SINE MIR 100 183 -62 289 181 66 0 chr3 15617728 15617810 -211906768 + MIR SINE MIR 36 131 -77 323 325 20 5 chr3 15620459 15620656 -211903922 + L2 LINE L2 1893 2092 -1222 188 274 295 0 chr3 15621416 15621511 -211903067 + L2 LINE L2 3150 3272 0 429 161 74 0 chr3 15621685 15621766 -211902812 - MIR SINE MIR -65 143 57 1963 153 0 6 chr3 15621789 15622103 -211902475 + AluJo SINE Alu 1 312 0 207 261 31 0 chr3 15622863 15622928 -211901650 - MIR SINE MIR -80 128 62 403 277 115 0 chr3 15623334 15623464 -211901114 - MER117 DNA MER1_type -14 183 39 1865 203 80 20 chr3 15624208 15624646 -211899932 + MLT1C LTR MaLR 4 467 0 270 296 98 15 chr3 15625048 15625180 -211899398 + L3 LINE CR1 1336 1478 -99 346 373 26 31 chr3 15625533 15625726 -211898852 - L3 LINE CR1 -16 1561 1370 223 259 0 0 chr3 15625935 15625989 -211898589 - L2 LINE L2 -213 3059 3006 222 248 101 28 chr3 15625982 15626091 -211898487 - L2 LINE L2 -23 3249 3133 * 256 269 45 0 chr3 15626465 15626532 -211898046 + MIR SINE MIR 114 183 -79 198 358 60 7 chr3 15626632 15626783 -211897795 + L2 LINE L2 2899 3057 -215 21 0 0 0 chr3 15626976 15626997 -211897581 + AT_rich Low_complexity Low_complexity 1 21 0 201 289 333 0 chr3 15627855 15627945 -211896633 - MIR3 SINE MIR -52 156 37 352 263 70 7 chr3 15628113 15628266 -211896312 - MIR3 SINE MIR -16 192 24 2708 19 0 6 chr3 15628410 15628723 -211895855 + AluY SINE Alu 1 311 0 372 43 0 0 chr3 15628761 15628807 -211895771 + (TG)n Simple_repeat Simple_repeat 1 46 0 268 286 143 0 chr3 15628832 15628930 -211895648 + MIR SINE MIR 35 146 -62 711 238 119 18 chr3 15628952 15629179 -211895399 - MER112 DNA MER1_type 0 260 11 297 0 0 0 chr3 15629583 15629616 -211894962 + (GA)n Simple_repeat Simple_repeat 1 33 0 220 281 16 16 chr3 15629666 15629730 -211894848 - L2 LINE L2 0 3272 3209 467 296 87 43 chr3 15629788 15630018 -211894560 - MIR SINE MIR -7 255 16 383 313 45 0 chr3 15630082 15630216 -211894362 - MIR3 SINE MIR -7 201 62 305 146 0 0 chr3 15631200 15631248 -211893330 - MIR SINE MIR -75 133 86 746 189 33 50 chr3 15631828 15632008 -211892570 + MER5B DNA MER1_type 2 178 0 293 225 28 0 chr3 15632012 15632083 -211892495 - MIR3 SINE MIR -50 158 86 2084 229 51 15 chr3 15633206 15633751 -211890827 - L1MD2 LINE L1 -9 6350 5786 441 150 12 12 chr3 15633774 15633854 -211890724 - MER116 DNA Mariner 0 80 1 562 128 0 0 chr3 15633858 15633936 -211890642 - AluS SINE Alu -234 78 1 274 233 87 10 chr3 15633959 15634062 -211890516 - L1ME LINE L1 -296 5866 5756 325 331 55 0 chr3 15634238 15634383 -211890195 + L2 LINE L2 2900 3052 -220 264 345 12 0 chr3 15634416 15634500 -211890078 + L2 LINE L2 3188 3272 0 270 226 0 0 chr3 15635100 15635153 -211889425 + MIR3 SINE MIR 116 168 -40 365 245 37 43 chr3 15635411 15635545 -211889033 - L1MCa LINE L1 -1339 6983 2001 3969 155 31 12 chr3 15636304 15637022 -211887556 + L1MB3 LINE L1 5453 6183 0 2029 136 0 13 chr3 15637048 15637364 -211887214 + AluSx SINE Alu 1 312 0 293 361 62 5 chr3 15638602 15638810 -211885768 + L2 LINE L2 2813 3032 -240 180 360 11 22 chr3 15638794 15638883 -211885695 + MIR SINE MIR 60 147 -115 * 281 316 10 41 chr3 15638994 15639092 -211885486 - MIR SINE MIR 0 262 168 276 366 68 14 chr3 15639136 15639359 -211885219 + MIR SINE MIR 17 247 -15 * 548 313 0 0 chr3 15639348 15639498 -211885080 - MIR SINE MIR -100 162 13 330 288 212 0 chr3 15639505 15639623 -211884955 + MIR3 SINE MIR 30 172 -36 472 191 6 24 chr3 15639906 15640074 -211884504 + (TCCA)n Simple_repeat Simple_repeat 2 166 0 941 209 11 7 chr3 15640113 15640405 -211884173 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 196 322 0 0 chr3 15640965 15641024 -211883554 + MIR SINE MIR 63 121 -87 629 227 213 0 chr3 15641103 15641310 -211883268 - MIR SINE MIR 0 262 12 2406 201 87 14 chr3 15642508 15643016 -211881562 + MLT1H LTR MaLR 2 546 -3 320 316 105 0 chr3 15644002 15644135 -211880443 + HAL1b LINE L1 1202 1348 0 246 318 96 44 chr3 15644603 15644844 -211879734 - MIR3 SINE MIR -3 259 11 976 160 16 94 chr3 15644907 15645224 -211879354 + MER33 DNA MER1_type 6 297 -2327 843 146 8 8 chr3 15645224 15645354 -211879224 - FLAM_C SINE Alu -2 131 2 976 160 16 94 chr3 15645354 15645417 -211879161 + MER33 DNA MER1_type 297 363 0 852 241 20 5 chr3 15646533 15646732 -211877846 + Charlie8 DNA MER1_type 61 262 -2155 626 237 39 56 chr3 15647205 15647437 -211877141 + MIR SINE MIR 28 255 -7 222 255 0 0 chr3 15647417 15647464 -211877114 + L2 LINE L2 3264 3310 -3 * 1013 241 70 70 chr3 15647535 15647909 -211876669 - L2 LINE L2 0 3313 2940 299 211 0 0 chr3 15647913 15647970 -211876608 - MIR SINE MIR -67 141 85 358 267 107 7 chr3 15648354 15648504 -211876074 + LTR16A1 LTR ERVL 263 427 -30 312 325 18 0 chr3 15649164 15649278 -211875300 + L2 LINE L2 2658 2773 -541 553 240 91 11 chr3 15649335 15649510 -211875068 - MIR SINE MIR -45 217 29 251 321 0 0 chr3 15649619 15649700 -211874878 - MIR3 SINE MIR -50 158 78 307 89 36 0 chr3 15651230 15651286 -211873292 + GA-rich Low_complexity Low_complexity 2 59 0 371 270 92 25 chr3 15651919 15652082 -211872496 - MIR SINE MIR -28 234 61 341 266 0 81 chr3 15652368 15652492 -211872086 - MIR SINE MIR -46 216 103 22 35 0 0 chr3 15652799 15652828 -211871750 + AT_rich Low_complexity Low_complexity 1 29 0 249 306 0 0 chr3 15653390 15653462 -211871116 + MIR SINE MIR 76 147 -115 1504 178 0 36 chr3 15653542 15653817 -211870761 - AluJo SINE Alu -47 265 1 2052 117 0 32 chr3 15653829 15654138 -211870440 - AluSx SINE Alu -13 299 1 281 160 264 66 chr3 15654425 15654531 -211870047 - MER5A DNA MER1_type -2 187 61 32 31 0 46 chr3 15654531 15654558 -211870020 + AT_rich Low_complexity Low_complexity 1 28 -34 322 44 0 0 chr3 15654558 15654603 -211869975 - L1PA3 LINE L1 0 6155 6111 32 31 0 46 chr3 15654603 15654640 -211869938 + AT_rich Low_complexity Low_complexity 28 62 0 318 256 0 0 chr3 15654640 15654718 -211869860 - MER5A DNA MER1_type -111 78 1 279 227 18 118 chr3 15654838 15654948 -211869630 - MER103 DNA DNA -65 101 3 1009 229 13 34 chr3 15655030 15655266 -211869312 + MIR SINE MIR 20 250 -12 224 291 0 0 chr3 15658051 15658106 -211866472 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 214 18 18 chr3 15659640 15659696 -211864882 + L2 LINE L2 3258 3313 0 952 229 80 82 chr3 15660199 15660588 -211863990 + Charlie4a DNA MER1_type 120 507 -1 2377 147 17 17 chr3 15660862 15661269 -211863309 + L1MB3 LINE L1 5774 6180 -3 390 121 0 0 chr3 15661940 15662006 -211862572 + (TG)n Simple_repeat Simple_repeat 1 66 0 327 266 57 16 chr3 15662674 15662798 -211861780 - MIR3 SINE MIR -77 131 3 398 226 66 44 chr3 15664188 15664325 -211860253 + MIR3 SINE MIR 19 158 -50 232 129 0 113 chr3 15664571 15664633 -211859945 - L2 LINE L2 -93 3179 3125 194 316 218 10 chr3 15664865 15665058 -211859520 - MIR SINE MIR -10 252 20 358 232 36 72 chr3 15665836 15665974 -211858604 - MIR SINE MIR -80 182 50 275 266 124 0 chr3 15666466 15666579 -211857999 + MIR3 SINE MIR 45 171 -37 1167 278 124 2 chr3 15666709 15667127 -211857451 + L1MC4 LINE L1 7574 8042 0 383 295 66 12 chr3 15667172 15667338 -211857240 + Charlie8 DNA MER1_type 43 217 -2200 194 281 207 2 chr3 15667566 15667685 -211856893 - MIR SINE MIR -61 147 9 330 290 0 69 chr3 15667723 15667854 -211856724 - MIR SINE MIR -57 205 84 212 344 52 0 chr3 15668327 15668423 -211856155 - MIR SINE MIR -147 115 15 274 236 251 5 chr3 15668438 15668634 -211855944 - MIR3 SINE MIR -6 256 7 233 329 52 45 chr3 15669239 15669394 -211855184 - L3 LINE CR1 -58 1519 1364 253 325 196 0 chr3 15669658 15669821 -211854757 - L3 LINE CR1 -952 625 431 587 267 198 42 chr3 15670801 15671134 -211853444 + L2 LINE L2 2926 3310 -3 545 324 89 29 chr3 15671155 15671470 -211853108 + L2 LINE L2 2854 3187 -85 364 256 284 4 chr3 15671654 15671921 -211852657 + L2 LINE L2 2682 3023 -290 288 324 37 0 chr3 15672000 15672108 -211852470 + L2 LINE L2 3200 3311 -2 376 248 46 18 chr3 15672166 15672275 -211852303 + L2 LINE L2 3189 3300 -13 799 192 99 16 chr3 15673190 15673372 -211851206 + MER117 DNA MER1_type 1 197 0 548 267 161 14 chr3 15673941 15674158 -211850420 - MIR SINE MIR -1 261 13 311 286 111 8 chr3 15674177 15674303 -211850275 + MIR SINE MIR 77 215 -47 320 268 118 1 chr3 15674524 15674648 -211849930 + MIR SINE MIR 29 163 -62 190 272 40 96 chr3 15675262 15675387 -211849191 - MIR3 SINE MIR -89 119 2 501 276 79 39 chr3 15675856 15676059 -211848519 + MIR SINE MIR 52 262 0 365 270 108 0 chr3 15676507 15676618 -211847960 + MIR SINE MIR 27 149 -113 341 276 45 30 chr3 15677379 15677513 -211847065 + MIR3 SINE MIR 27 162 -46 250 249 58 45 chr3 15677579 15677683 -211846895 - MIR SINE MIR -96 112 7 1773 194 71 0 chr3 15677865 15678189 -211846389 + MER7A DNA MER2_type 2 346 0 243 284 147 43 chr3 15678190 15678412 -211846166 - MIR SINE MIR -13 249 13 206 214 0 14 chr3 15678864 15678934 -211845644 + CT-rich Low_complexity Low_complexity 2 70 0 372 247 43 0 chr3 15679303 15679396 -211845182 - MIR SINE MIR -49 213 117 207 0 0 0 chr3 15679814 15679837 -211844741 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 361 257 9 28 chr3 15680079 15680188 -211844390 + MIR SINE MIR 37 143 -65 545 240 105 1 chr3 15680371 15680536 -211844042 + MIR SINE MIR 16 197 -65 220 121 0 86 chr3 15680822 15680880 -211843698 + (TTTTTA)n Simple_repeat Simple_repeat 2 54 0 220 331 55 24 chr3 15681431 15681558 -211843020 + MER5A DNA MER1_type 33 163 -26 336 207 140 140 chr3 15681565 15681635 -211842943 + MIR SINE MIR 74 143 -119 860 118 0 0 chr3 15681635 15681754 -211842824 - L1PB1 LINE L1 -1 6150 6032 336 207 140 140 chr3 15681754 15681862 -211842716 + MIR SINE MIR 142 252 -10 1188 244 94 39 chr3 15682481 15682919 -211841659 + MLT1C LTR MaLR 6 467 0 379 223 248 6 chr3 15682978 15683135 -211841443 + MIR SINE MIR 9 203 -59 332 309 10 0 chr3 15683127 15683224 -211841354 - L2 LINE L2 0 3313 3216 * 267 331 50 8 chr3 15684577 15684698 -211839880 - L2 LINE L2 0 3272 3147 272 289 13 0 chr3 15685439 15685515 -211839063 + MIR3 SINE MIR 85 161 -47 744 236 63 80 chr3 15685872 15686109 -211838469 - MER102a DNA MER1_type 0 330 98 443 327 138 18 chr3 15686561 15686778 -211837800 + MIR SINE MIR 20 262 0 335 291 39 0 chr3 15686907 15687010 -211837568 + MIR3 SINE MIR 85 191 -17 454 234 135 21 chr3 15687370 15687511 -211837067 + MIR3 SINE MIR 14 170 -38 205 306 45 54 chr3 15687777 15687888 -211836690 + L2 LINE L2 2893 3002 -270 305 309 41 8 chr3 15687890 15688013 -211836565 + Charlie8 DNA MER1_type 9 135 -2282 194 267 22 56 chr3 15688145 15688235 -211836343 + L3 LINE CR1 1298 1384 -193 183 80 0 0 chr3 15688235 15688260 -211836318 + (T)n Simple_repeat Simple_repeat 1 25 0 1648 150 32 35 chr3 15688353 15688861 -211835717 - SVA Other Other -518 868 462 349 284 0 0 chr3 15689116 15689204 -211835374 - L2 LINE L2 0 3313 3226 354 233 29 29 chr3 15690489 15690592 -211833986 + MIR SINE MIR 47 149 -113 328 291 120 75 chr3 15691732 15691843 -211832735 + MIR SINE MIR 19 124 -138 2260 90 0 0 chr3 15691843 15692142 -211832436 - AluSq SINE Alu -14 299 1 328 291 120 75 chr3 15692142 15692264 -211832314 + MIR SINE MIR 124 262 0 718 243 24 0 chr3 15692294 15692463 -211832115 - MER5B DNA MER1_type 0 178 6 648 219 69 0 chr3 15692466 15692626 -211831952 + MER5A DNA MER1_type 17 187 -2 318 209 203 57 chr3 15694571 15694729 -211829849 + MER53 DNA DNA 9 189 0 276 272 128 24 chr3 15694778 15694903 -211829675 - MIR3 SINE MIR -54 154 17 292 330 80 8 chr3 15695217 15695406 -211829172 + MIR3 SINE MIR 37 243 -19 430 315 90 22 chr3 15695647 15695825 -211828753 - MIR SINE MIR -72 190 1 531 287 29 103 chr3 15696123 15696417 -211828161 + L1MC4a LINE L1 5746 6017 -104 2008 116 25 0 chr3 15696489 15696612 -211827966 + AluSx SINE Alu 1 119 -193 219 69 0 0 chr3 15696612 15696641 -211827937 + (TA)n Simple_repeat Simple_repeat 2 30 0 2008 116 25 0 chr3 15696641 15696802 -211827776 + AluSx SINE Alu 119 292 -20 402 283 206 17 chr3 15696914 15697094 -211827484 + MIR SINE MIR 32 245 -17 984 261 96 26 chr3 15697198 15697616 -211826962 + L2 LINE L2 2531 2977 -337 22 35 0 0 chr3 15697718 15697747 -211826831 + AT_rich Low_complexity Low_complexity 1 29 0 277 285 0 26 chr3 15698523 15698647 -211825931 - MIR SINE MIR -72 136 19 214 296 99 0 chr3 15698691 15698772 -211825806 + L2 LINE L2 2306 2394 -920 548 216 41 72 chr3 15699574 15699768 -211824810 + MIR SINE MIR 48 235 -27 216 352 37 28 chr3 15700348 15700456 -211824122 + MIR SINE MIR 93 201 -61 6452 184 74 89 chr3 15700764 15702979 -211821599 + Tigger1 DNA MER2_type 29 2210 -208 407 107 67 27 chr3 15702985 15703060 -211821518 + Tigger1 DNA MER2_type 2340 2417 -1 575 177 0 65 chr3 15703104 15703228 -211821350 + L2 LINE L2 3196 3311 -2 398 239 137 8 chr3 15703589 15703706 -211820872 + MIR SINE MIR 20 151 -111 424 248 71 18 chr3 15704945 15705058 -211819520 + MIR SINE MIR 30 148 -60 514 300 161 15 chr3 15705255 15705515 -211819063 + L2 LINE L2 3015 3312 -1 442 241 73 22 chr3 15705829 15705966 -211818612 - L2 LINE L2 -486 2828 2685 542 260 65 0 chr3 15706005 15706159 -211818419 - MIR SINE MIR -58 204 41 433 243 143 7 chr3 15706522 15706662 -211817916 + MIR SINE MIR 13 171 -91 1862 199 67 0 chr3 15707586 15707989 -211816589 - MER63B DNA MER1_type 0 436 7 399 291 32 51 chr3 15708584 15708742 -211815836 + MIR SINE MIR 3 144 -64 408 289 107 9 chr3 15708793 15708991 -211815587 - MIR SINE MIR -36 226 2 186 338 0 0 chr3 15709091 15709158 -211815420 - MIR SINE MIR -62 146 92 1146 143 12 76 chr3 15709166 15709497 -211815081 + MLT1B LTR MaLR 1 370 -20 365 295 59 7 chr3 15709574 15709712 -211814866 + MIR3 SINE MIR 65 208 0 243 191 0 0 chr3 15710338 15710385 -211814193 - MIR SINE MIR -63 145 99 325 281 11 35 chr3 15710716 15710851 -211813727 - MIR3 SINE MIR -14 194 60 677 120 0 0 chr3 15711214 15711306 -211813272 + AluJb SINE Alu 2 93 -219 * 722 144 10 0 chr3 15711301 15711405 -211813173 - AluSg/x SINE Alu -78 234 130 1402 117 19 0 chr3 15711405 15711611 -211812967 + AluJb SINE Alu 103 312 0 218 349 113 20 chr3 15711990 15712185 -211812393 + L2 LINE L2 2870 3082 -190 569 294 124 5 chr3 15712255 15712473 -211812105 + MIR SINE MIR 16 259 -3 2018 113 51 0 chr3 15712728 15713020 -211811558 - AluSx SINE Alu -4 308 2 197 213 21 0 chr3 15713194 15713241 -211811337 + L2 LINE L2 3266 3313 0 217 257 168 23 chr3 15713302 15713430 -211811148 - MIR SINE MIR -68 140 36 783 225 75 15 chr3 15714278 15714478 -211810100 - MIR SINE MIR 0 262 51 1428 244 68 35 chr3 15714791 15715250 -211809328 + MLT1K LTR MaLR 85 558 -30 377 295 0 0 chr3 15715346 15715454 -211809124 - MIR SINE MIR -63 145 52 217 322 161 0 chr3 15716377 15716464 -211808114 - L2 LINE L2 -1 3271 3171 472 292 29 23 chr3 15716682 15716853 -211807725 - MIR SINE MIR -66 196 25 824 237 106 0 chr3 15717902 15718109 -211806469 - MIR SINE MIR -32 230 2 205 254 0 15 chr3 15718266 15718333 -211806245 - MIR SINE MIR -133 129 64 220 214 0 0 chr3 15718338 15718380 -211806198 - MIR SINE MIR -102 160 119 188 331 61 39 chr3 15718489 15718670 -211805908 + L2 LINE L2 3004 3188 -84 183 303 49 57 chr3 15722583 15722705 -211801873 - MIR SINE MIR -64 144 24 346 305 133 8 chr3 15722782 15722910 -211801668 + MIR SINE MIR 17 160 -102 217 147 0 0 chr3 15723372 15723406 -211801172 - L2 LINE L2 -19 3294 3261 190 345 0 0 chr3 15723454 15723512 -211801066 + L2 LINE L2 3256 3313 0 490 307 61 12 chr3 15723550 15723713 -211800865 - MIR SINE MIR -87 175 5 241 326 15 45 chr3 15724436 15724568 -211800010 + MIR SINE MIR 84 211 -51 * 268 200 55 0 chr3 15724527 15724582 -211799996 - MIR SINE MIR -4 258 201 565 276 86 23 chr3 15724622 15724843 -211799735 + MIR SINE MIR 28 262 0 637 257 63 0 chr3 15724844 15725019 -211799559 - MIR SINE MIR -75 187 2 183 262 0 82 chr3 15725032 15725093 -211799485 + MIR SINE MIR 157 212 -50 713 205 5 0 chr3 15725317 15725542 -211799036 + (TCCA)n Simple_repeat Simple_repeat 1 226 0 185 330 144 8 chr3 15725542 15725660 -211798918 - L2 LINE L2 0 3272 3139 375 323 110 48 chr3 15726276 15726567 -211798011 + L2 LINE L2 2953 3261 -11 210 227 212 0 chr3 15726590 15726656 -211797922 + MIR SINE MIR 84 163 -99 310 234 133 9 chr3 15726889 15726998 -211797580 + MIR SINE MIR 73 192 -62 511 232 19 3 chr3 15727271 15727403 -211797175 + MIR3 SINE MIR 59 194 -14 523 276 111 0 chr3 15727878 15728059 -211796519 + MIR SINE MIR 56 256 -6 359 256 8 0 chr3 15729532 15729665 -211794913 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 260 327 40 0 chr3 15730207 15730308 -211794270 - MIR SINE MIR -93 169 65 211 279 23 78 chr3 15730359 15730488 -211794090 + MIR3 SINE MIR 87 208 0 319 302 151 17 chr3 15731200 15731372 -211793206 - MIR SINE MIR -7 255 61 253 269 32 54 chr3 15733023 15733036 -211791542 + MER5A DNA MER1_type 1 11 -178 249 283 80 18 chr3 15733036 15733149 -211791429 - MER5A DNA MER1_type -1 188 69 696 253 72 27 chr3 15733971 15734192 -211790386 - MIR SINE MIR -1 261 31 192 379 11 0 chr3 15734433 15734520 -211790058 + L2 LINE L2 2890 2977 -337 620 319 75 0 chr3 15734897 15735138 -211789440 - MIR SINE MIR -3 259 1 424 269 8 30 chr3 15736137 15736271 -211788307 + MIR SINE MIR 97 227 -35 211 312 21 0 chr3 15736305 15736398 -211788180 - MIR SINE MIR -68 140 46 385 281 117 82 chr3 15737495 15737776 -211786802 - L3 LINE CR1 -12 1565 1275 326 272 10 19 chr3 15738490 15738593 -211785985 + MIR3 SINE MIR 104 205 -3 276 339 35 0 chr3 15739406 15739521 -211785057 - MIR SINE MIR -136 126 8 247 235 0 59 chr3 15740107 15740175 -211784403 - MIR SINE MIR -63 145 82 260 306 12 0 chr3 15740180 15740265 -211784313 + MER96 DNA MER1_type? 5 90 -85 752 242 79 5 chr3 15740685 15740875 -211783703 - MIR SINE MIR -1 261 58 227 320 126 0 chr3 15741512 15741615 -211782963 - MIR3 SINE MIR -18 190 75 775 254 21 5 chr3 15741741 15741930 -211782648 - MIR SINE MIR -70 192 1 396 169 0 0 chr3 15742845 15742922 -211781656 + (TG)n Simple_repeat Simple_repeat 2 78 0 294 286 27 34 chr3 15742941 15743088 -211781490 + GA-rich Low_complexity Low_complexity 5 150 0 675 191 7 41 chr3 15743112 15743259 -211781319 + L1MA7 LINE L1 6148 6289 -2 21 36 0 0 chr3 15743259 15743287 -211781291 + AT_rich Low_complexity Low_complexity 1 28 0 2353 32 0 3 chr3 15743292 15743574 -211781004 + AluY SINE Alu 26 306 -5 299 321 179 15 chr3 15744092 15744288 -211780290 + L2 LINE L2 3020 3247 -25 307 313 193 6 chr3 15744332 15744508 -211780070 - MIR SINE MIR -50 212 4 256 242 0 30 chr3 15744704 15744770 -211779808 - L2 LINE L2 0 3272 3209 1990 134 3 0 chr3 15744818 15745108 -211779470 + AluSx SINE Alu 1 291 -21 1719 289 98 12 chr3 15745184 15745998 -211778580 - L2 LINE L2 -338 2976 2093 212 129 0 0 chr3 15746914 15746945 -211777633 - L2 LINE L2 -19 3294 3264 462 264 52 14 chr3 15746953 15747118 -211777460 + MIR SINE MIR 15 147 -61 225 242 152 20 chr3 15747116 15747215 -211777363 - MIR SINE MIR -89 173 62 * 409 305 6 40 chr3 15748657 15748831 -211775747 - L1M4 LINE L1 -999 5147 4980 4511 182 34 3 chr3 15748841 15749949 -211774629 - L1MB3 LINE L1 0 6183 5043 404 315 105 33 chr3 15749980 15750265 -211774313 + L2 LINE L2 2324 2634 -680 1895 123 86 42 chr3 15750265 15750624 -211773954 + THE1C LTR MaLR 1 375 0 404 315 105 33 chr3 15750624 15750643 -211773935 + L2 LINE L2 2634 2650 -664 400 272 15 15 chr3 15750801 15750937 -211773641 + L2 LINE L2 2921 3056 -216 1792 133 18 25 chr3 15751282 15751567 -211773011 + AluJo SINE Alu 1 283 -29 372 242 153 0 chr3 15751700 15751824 -211772754 + MIR SINE MIR 108 250 -12 646 311 56 11 chr3 15752182 15752452 -211772126 + L2 LINE L2 2590 2871 -443 802 207 96 15 chr3 15752554 15752752 -211771826 + MLT1K LTR MaLR 375 588 0 1096 265 70 39 chr3 15752762 15753003 -211771575 + L2 LINE L2 2858 3090 -223 2130 100 0 0 chr3 15753003 15753318 -211771260 - AluSx SINE Alu 0 319 5 1096 265 70 39 chr3 15753318 15753430 -211771148 + L2 LINE L2 3090 3197 -116 753 167 0 0 chr3 15753430 15753544 -211771034 + MER81 DNA DNA 1 114 0 1096 265 70 39 chr3 15753544 15753630 -211770948 + L2 LINE L2 3197 3313 0 359 318 91 15 chr3 15753635 15753833 -211770745 - MIR SINE MIR -37 225 13 556 256 7 7 chr3 15754401 15754538 -211770040 - MIR SINE MIR -70 192 56 212 262 33 0 chr3 15754706 15754767 -211769811 - MIR SINE MIR -116 146 84 251 290 105 0 chr3 15755460 15755584 -211768994 + MIR3 SINE MIR 37 173 -35 240 261 14 5 chr3 15756296 15756391 -211768187 + MIR SINE MIR 49 145 -63 412 253 188 0 chr3 15756665 15756819 -211767759 - MIR SINE MIR -21 241 59 235 325 39 0 chr3 15757677 15757754 -211766824 + MIR SINE MIR 119 198 -64 495 48 0 0 chr3 15757778 15757840 -211766738 + (TG)n Simple_repeat Simple_repeat 2 63 0 575 330 149 3 chr3 15757867 15758193 -211766385 + L2 LINE L2 2764 3041 -272 240 35 0 0 chr3 15758193 15758222 -211766356 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2077 88 0 28 chr3 15758223 15758507 -211766071 - AluSx SINE Alu -36 276 1 575 330 149 3 chr3 15758507 15758635 -211765943 + L2 LINE L2 3040 3313 0 264 175 0 0 chr3 15758722 15758785 -211765793 + (CA)n Simple_repeat Simple_repeat 1 63 0 349 248 152 0 chr3 15759046 15759151 -211765427 + L2 LINE L2 3193 3313 0 1206 171 0 8 chr3 15759456 15759931 -211764647 + (TCCA)n Simple_repeat Simple_repeat 1 471 0 842 19 0 9 chr3 15759943 15760048 -211764530 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 1238 241 138 18 chr3 15760169 15760883 -211763695 + L2 LINE L2 2506 3312 -1 411 265 118 0 chr3 15761735 15761871 -211762707 + MIR SINE MIR 77 228 -34 1803 149 23 7 chr3 15761881 15762183 -211762395 - AluSx SINE Alu -4 308 2 2137 116 0 0 chr3 15762710 15763011 -211761567 - AluSq SINE Alu -12 301 1 797 208 28 17 chr3 15763286 15763464 -211761114 - MER104 DNA MER2_type 0 180 1 282 56 0 0 chr3 15764500 15764536 -211760042 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 745 287 103 22 chr3 15764561 15765154 -211759424 - L2 LINE L2 -49 3264 2624 992 239 45 4 chr3 15765737 15765984 -211758594 - MIR SINE MIR -2 260 4 227 312 72 0 chr3 15766143 15766236 -211758342 + MIR SINE MIR 64 118 -90 322 306 0 20 chr3 15766353 15766451 -211758127 - MIR SINE MIR -71 137 42 223 231 19 0 chr3 15766873 15766925 -211757653 + MIR SINE MIR 88 140 -68 217 196 0 22 chr3 15767259 15767305 -211757273 - MIR SINE MIR -117 145 101 757 236 138 38 chr3 15767733 15768080 -211756498 + LTR16A1 LTR ERVL 4 385 -72 324 279 49 8 chr3 15768245 15768367 -211756211 - MIR3 SINE MIR -47 161 35 357 282 30 23 chr3 15768770 15768901 -211755677 + MIR3 SINE MIR 14 145 -63 844 226 47 14 chr3 15768991 15769203 -211755375 - MIR SINE MIR -16 246 28 453 277 113 13 chr3 15769644 15769803 -211754775 - MIR SINE MIR -83 179 5 352 323 38 1 chr3 15770472 15770609 -211753969 - MIR SINE MIR -59 149 36 198 264 45 91 chr3 15770639 15770749 -211753829 - MIR SINE MIR -35 227 123 197 344 115 13 chr3 15770746 15770903 -211753675 - MIR SINE MIR -10 252 80 * 399 167 8 125 chr3 15771362 15771414 -211753164 + MIR SINE MIR 47 79 -183 2149 113 3 10 chr3 15771414 15771723 -211752855 - AluSx SINE Alu -5 307 1 399 167 8 125 chr3 15771723 15771790 -211752788 + MIR SINE MIR 79 152 -110 1677 235 51 27 chr3 15771856 15772307 -211752271 + MLT1C LTR MaLR 6 467 0 229 313 85 8 chr3 15772402 15772555 -211752023 - MIR SINE MIR -60 148 20 1407 114 0 0 chr3 15772859 15773052 -211751526 - AluJb SINE Alu -15 297 105 192 342 13 0 chr3 15773245 15773324 -211751254 + MIR3 SINE MIR 117 196 -12 413 262 9 9 chr3 15773818 15773925 -211750653 - MIR SINE MIR -71 137 31 296 284 71 16 chr3 15774002 15774129 -211750449 + MIR3 SINE MIR 61 194 -14 354 262 126 14 chr3 15774340 15774516 -211750062 + MIR SINE MIR 18 214 -48 201 133 0 0 chr3 15776842 15776872 -211747706 + (AAATG)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr3 15777092 15777123 -211747455 + GC_rich Low_complexity Low_complexity 1 31 0 183 100 0 0 chr3 15777214 15777244 -211747334 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 284 323 36 30 chr3 15779234 15779401 -211745177 - MIR SINE MIR -67 195 28 232 265 112 10 chr3 15779639 15779737 -211744841 - L3 LINE CR1 -102 1475 1368 425 261 115 13 chr3 15779755 15779912 -211744666 + L2 LINE L2 2988 3160 -112 286 247 34 45 chr3 15779996 15780085 -211744493 - MIR3 SINE MIR -34 174 87 239 365 56 8 chr3 15780969 15781095 -211743483 - MIR SINE MIR -60 148 17 195 281 0 18 chr3 15781290 15781347 -211743231 + MIR SINE MIR 22 77 -185 1973 130 0 10 chr3 15783825 15784117 -211740461 - AluJb SINE Alu -23 289 1 384 287 132 12 chr3 15784271 15784438 -211740140 - MIR SINE MIR -64 198 12 7571 44 0 2 chr3 15784498 15785760 -211738818 + L1PA5 LINE L1 4894 6153 -1 2563 261 14 13 chr3 15785760 15786592 -211737986 - L1M4 LINE L1 -2613 3533 2701 622 242 20 20 chr3 15786721 15786874 -211737704 + MIR SINE MIR 22 174 -88 579 238 119 16 chr3 15787147 15787332 -211737246 - MIR SINE MIR -6 256 53 605 316 136 23 chr3 15787799 15788358 -211736220 + L2 LINE L2 2625 3272 0 211 298 0 0 chr3 15788717 15788774 -211735804 - L2 LINE L2 -2 3311 3255 288 252 148 40 chr3 15788916 15789112 -211735466 - MIR SINE MIR -11 251 18 477 0 0 0 chr3 15789381 15789434 -211735144 + (CA)n Simple_repeat Simple_repeat 1 53 0 258 311 0 22 chr3 15789472 15789562 -211735016 - MIR SINE MIR -61 147 60 492 261 14 14 chr3 15789730 15789868 -211734710 + MIR SINE MIR 13 150 -112 836 322 90 26 chr3 15789894 15790399 -211734179 - L2 LINE L2 0 3272 2733 787 263 17 38 chr3 15790908 15791144 -211733434 - MIR SINE MIR -27 235 5 225 199 0 36 chr3 15791458 15791514 -211733064 - MIR3 SINE MIR -49 159 105 628 237 95 38 chr3 15792009 15792220 -211732358 + MIR SINE MIR 21 243 -19 652 305 63 9 chr3 15792561 15792784 -211731794 + MIR SINE MIR 22 256 -6 795 219 137 0 chr3 15792869 15793052 -211731526 - MER63A DNA MER1_type 0 210 3 184 378 20 0 chr3 15793537 15793635 -211730943 + MIR SINE MIR 25 124 -138 250 279 63 45 chr3 15793658 15793769 -211730809 + MIR SINE MIR 63 175 -87 207 0 0 0 chr3 15793879 15793902 -211730676 + (TG)n Simple_repeat Simple_repeat 2 24 0 201 268 14 56 chr3 15794310 15794381 -211730197 + MIR3 SINE MIR 115 182 -26 304 310 57 45 chr3 15794501 15794746 -211729832 - MIR SINE MIR -6 256 9 181 306 125 0 chr3 15794715 15794787 -211729791 - L2 LINE L2 -24 3248 3168 * 260 308 84 9 chr3 15795767 15795874 -211728704 + MIR SINE MIR 81 195 -67 913 228 100 21 chr3 15795891 15796132 -211728446 - MIR SINE MIR 0 262 3 212 259 121 0 chr3 15796641 15796699 -211727879 - L2 LINE L2 -12 3301 3237 1947 117 52 0 chr3 15797382 15797672 -211726906 - AluSx SINE Alu -7 305 1 192 77 0 0 chr3 15797674 15797700 -211726878 + (T)n Simple_repeat Simple_repeat 1 26 0 194 321 0 0 chr3 15797973 15798029 -211726549 + L3 LINE CR1 422 477 -1100 533 319 74 5 chr3 15798715 15798931 -211725647 - MIR SINE MIR -12 250 20 21 0 0 0 chr3 15799022 15799043 -211725535 + AT_rich Low_complexity Low_complexity 1 21 0 401 269 0 10 chr3 15799229 15799333 -211725245 - MIR SINE MIR -140 122 20 416 228 57 16 chr3 15799618 15799741 -211724837 - MIR SINE MIR -52 210 83 390 347 24 6 chr3 15799753 15799920 -211724658 + MIR SINE MIR 85 254 -8 288 302 52 17 chr3 15800059 15800175 -211724403 - MIR SINE MIR -42 220 101 394 250 9 0 chr3 15800854 15800962 -211723616 + Charlie8 DNA MER1_type 41 149 -2268 849 268 13 34 chr3 15801217 15801452 -211723126 - MIR SINE MIR -31 231 2 599 212 94 18 chr3 15801581 15801751 -211722827 - MIR SINE MIR -60 202 20 299 295 21 0 chr3 15802172 15802267 -211722311 + MIR SINE MIR 46 142 -66 1566 211 0 3 chr3 15802268 15802580 -211721998 - L1MC3 LINE L1 -2 7783 7473 420 219 86 18 chr3 15802612 15802751 -211721827 + L1ME3 LINE L1 6016 6162 0 550 244 16 0 chr3 15802873 15803000 -211721578 + MIR SINE MIR 121 249 -13 365 327 24 7 chr3 15803628 15803765 -211720813 + MIR3 SINE MIR 13 157 -75 183 156 0 0 chr3 15803769 15803801 -211720777 + (TGG)n Simple_repeat Simple_repeat 1 32 0 397 323 26 15 chr3 15803817 15804012 -211720566 - MIR SINE MIR -30 232 36 614 244 71 18 chr3 15804195 15804363 -211720215 - MIR SINE MIR -66 196 20 1860 207 68 22 chr3 15806572 15807016 -211717562 + MLT1C LTR MaLR 4 467 0 295 359 60 18 chr3 15807137 15807304 -211717274 - MIR SINE MIR -9 253 80 708 237 119 23 chr3 15808286 15808505 -211716073 + MIR SINE MIR 19 258 -4 369 265 185 20 chr3 15808564 15808715 -211715863 + MIR SINE MIR 68 243 -19 189 309 149 11 chr3 15808988 15809082 -211715496 + L2 LINE L2 2689 2795 -519 217 160 80 0 chr3 15809823 15809873 -211714705 + MIR SINE MIR 97 150 -112 306 230 349 0 chr3 15810261 15810413 -211714165 - MIR SINE MIR -10 252 48 287 289 158 9 chr3 15811387 15811501 -211713077 - MIR SINE MIR -2 260 130 424 255 103 7 chr3 15811581 15811726 -211712852 + MIR SINE MIR 90 248 -14 1992 131 6 13 chr3 15811806 15812120 -211712458 - AluSx SINE Alu 0 312 1 4519 210 84 39 chr3 15812128 15812302 -211712276 - L1MD2 LINE L1 -13 6346 6181 297 0 0 0 chr3 15812302 15812335 -211712243 + (TG)n Simple_repeat Simple_repeat 2 34 0 4519 210 84 39 chr3 15812335 15813437 -211711141 - L1MD2 LINE L1 -178 6181 5130 2015 146 0 3 chr3 15813437 15813745 -211710833 - AluJo SINE Alu -5 307 1 4519 210 84 39 chr3 15813745 15815185 -211709393 - L1MD2 LINE L1 -1229 5130 3521 14918 52 7 0 chr3 15815175 15817776 -211706802 + L1PA5 LINE L1 3520 6136 -18 3037 58 0 0 chr3 15817776 15817798 -211706780 + L1P LINE L1 3520 6142 -743 195 274 20 0 chr3 15817802 15817853 -211706725 + MIR SINE MIR 97 148 -114 258 339 71 22 chr3 15818553 15818736 -211705842 - MIR SINE MIR -50 212 21 447 305 131 56 chr3 15819359 15820164 -211704414 + L2 LINE L2 2362 3271 -1 254 299 142 30 chr3 15821573 15821707 -211702871 + MIR3 SINE MIR 32 180 -28 466 275 69 0 chr3 15821740 15821871 -211702707 - MIR SINE MIR -77 185 46 531 284 99 6 chr3 15822756 15822918 -211701660 - MIR SINE MIR -72 190 14 794 236 109 60 chr3 15823049 15823397 -211701181 + L2 LINE L2 2911 3275 -38 238 310 180 0 chr3 15823460 15823560 -211701018 - MIR SINE MIR -81 181 64 424 255 71 35 chr3 15824049 15824190 -211700388 - MER5A DNA MER1_type -9 180 35 1372 314 59 67 chr3 15824416 15824959 -211699619 + L3 LINE CR1 709 1244 -333 2103 101 0 10 chr3 15824959 15825267 -211699311 - AluSq SINE Alu -8 305 1 1372 314 59 67 chr3 15825267 15825588 -211698990 + L3 LINE CR1 1244 1566 -11 253 222 283 0 chr3 15825790 15825889 -211698689 + MIR3 SINE MIR 3 129 -79 446 197 13 0 chr3 15826006 15826082 -211698496 - MER81 DNA DNA -37 77 1 313 216 0 102 chr3 15826082 15826170 -211698408 - MER5A DNA MER1_type -102 87 9 421 237 47 81 chr3 15827487 15827698 -211696880 + MIR SINE MIR 21 224 -38 577 217 6 6 chr3 15827930 15828064 -211696514 + GA-rich Low_complexity Low_complexity 2 138 -29 1877 151 0 22 chr3 15828064 15828383 -211696195 + AluJb SINE Alu 1 312 0 577 217 6 6 chr3 15828383 15828414 -211696164 + GA-rich Low_complexity Low_complexity 137 167 0 193 272 86 37 chr3 15828567 15828648 -211695930 + MIR SINE MIR 31 115 -147 480 312 85 0 chr3 15828804 15828993 -211695585 + MLT1K LTR MaLR 361 565 -23 979 271 164 14 chr3 15829141 15829661 -211694917 - L1MC4 LINE L1 0 8042 7445 583 254 12 12 chr3 15829825 15829998 -211694580 - L1ME2 LINE L1 -194 5970 5798 631 265 39 94 chr3 15830298 15830673 -211693905 + L2 LINE L2 2888 3232 -40 222 222 0 0 chr3 15830691 15830745 -211693833 + GA-rich Low_complexity Low_complexity 2 55 0 189 0 0 0 chr3 15831071 15831092 -211693486 + (CA)n Simple_repeat Simple_repeat 1 21 0 457 266 82 58 chr3 15831201 15831408 -211693170 + L1ME4a LINE L1 5614 5825 -296 5399 124 34 6 chr3 15831413 15832259 -211692319 + L1MC1 LINE L1 5449 6318 -15 902 254 40 0 chr3 15832419 15832647 -211691931 - MIR SINE MIR -24 238 2 242 244 130 32 chr3 15832658 15832781 -211691797 + L1ME4a LINE L1 5986 6120 -1 371 252 171 8 chr3 15833184 15833307 -211691271 + MIR SINE MIR 21 163 -99 1325 188 104 3 chr3 15833307 15833850 -211690728 + MLT1E1 LTR MaLR 1 653 -1 295 203 0 0 chr3 15834197 15834256 -211690322 + L1ME LINE L1 5753 5811 -351 667 168 35 0 chr3 15834523 15834636 -211689942 + L2 LINE L2 3197 3313 0 200 313 38 12 chr3 15835033 15835113 -211689465 + MIR SINE MIR 63 144 -64 2231 177 34 10 chr3 15835376 15835794 -211688784 + MSTA LTR MaLR 1 428 0 186 43 0 0 chr3 15836049 15836072 -211688506 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 305 241 38 13 chr3 15836075 15836154 -211688424 - L2 LINE L2 -9 3263 3183 695 267 65 36 chr3 15836157 15836404 -211688174 - MIR SINE MIR -1 261 8 363 322 19 53 chr3 15836404 15836612 -211687966 - L2 LINE L2 -87 3185 2985 476 299 89 11 chr3 15836932 15837132 -211687446 + MIR SINE MIR 46 260 -2 28 48 0 0 chr3 15837667 15837709 -211686869 + AT_rich Low_complexity Low_complexity 1 42 0 265 263 220 34 chr3 15837709 15837827 -211686751 - MIR SINE MIR -109 153 14 391 255 0 66 chr3 15838216 15838322 -211686256 - L1MC4 LINE L1 -1330 6712 6614 * 395 236 35 0 chr3 15838249 15838357 -211686221 + L1MC4 LINE L1 1996 6983 -1339 816 101 0 62 chr3 15838357 15838486 -211686092 - FRAM SINE Alu -30 146 26 1065 249 111 31 chr3 15838629 15839054 -211685524 + MLT1K LTR MaLR 126 584 -4 268 281 21 21 chr3 15839160 15839256 -211685322 + MARNA DNA Mariner 348 443 -143 289 162 27 95 chr3 15839658 15839732 -211684846 + MIR SINE MIR 124 192 -70 222 37 0 0 chr3 15840062 15840089 -211684489 + (TG)n Simple_repeat Simple_repeat 1 27 0 464 278 107 0 chr3 15840091 15840260 -211684318 + MER91A DNA MER1_type 10 196 0 225 154 0 0 chr3 15840574 15840613 -211683965 + T-rich Low_complexity Low_complexity 1 39 0 2335 72 0 0 chr3 15840919 15841212 -211683366 + AluY SINE Alu 1 293 -18 263 235 62 12 chr3 15841217 15841298 -211683280 - MIR SINE MIR -12 250 166 243 204 0 0 chr3 15841459 15841503 -211683075 - MIR SINE MIR -111 151 108 649 284 37 9 chr3 15841685 15841905 -211682673 + MIR SINE MIR 35 258 -4 1918 155 0 0 chr3 15842127 15842430 -211682148 + AluSx SINE Alu 3 305 -7 188 138 0 0 chr3 15842448 15842477 -211682101 + MIR SINE MIR 66 94 -168 320 253 0 53 chr3 15842573 15842668 -211681910 - MIR SINE MIR -55 207 118 255 354 121 0 chr3 15843857 15843956 -211680622 + MIR SINE MIR 89 199 -63 453 62 0 0 chr3 15844967 15845032 -211679546 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 313 240 27 0 chr3 15845053 15845128 -211679450 - MIR SINE MIR -108 154 78 394 233 0 0 chr3 15845463 15845536 -211679042 + L2 LINE L2 3230 3302 -11 333 343 9 0 chr3 15845682 15845790 -211678788 + MIR SINE MIR 57 165 -97 261 234 141 0 chr3 15846487 15846573 -211678005 - MIR SINE MIR -51 157 49 413 233 60 9 chr3 15847912 15848028 -211676550 - L2 LINE L2 -12 3301 3180 658 248 0 0 chr3 15848256 15848381 -211676197 + L2 LINE L2 3189 3313 0 2356 191 63 39 chr3 15848525 15849092 -211675486 - L1MD2 LINE L1 -13 6346 5766 338 312 55 30 chr3 15849094 15849296 -211675282 - L1MD2 LINE L1 -509 5612 5406 1596 229 68 82 chr3 15849481 15849616 -211674962 + MLT1H LTR MaLR 45 180 -369 2060 96 43 127 chr3 15849616 15850011 -211674567 - THE1B LTR MaLR 0 364 3 1596 229 68 82 chr3 15850011 15850387 -211674191 + MLT1H LTR MaLR 180 549 0 498 269 39 8 chr3 15851531 15851661 -211672917 - MIR SINE MIR -109 153 20 457 274 97 10 chr3 15851854 15852045 -211672533 + MIR SINE MIR 40 248 -14 189 107 0 0 chr3 15852373 15852401 -211672177 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 234 360 45 9 chr3 15852409 15852520 -211672058 - L2 LINE L2 -20 3252 3138 500 224 48 8 chr3 15852675 15852800 -211671778 + MLT1L LTR MaLR 169 298 -317 356 273 125 0 chr3 15852873 15853001 -211671577 + MLT1L LTR MaLR 420 563 -52 330 262 57 33 chr3 15853352 15853474 -211671104 + MIR SINE MIR 108 232 -30 655 287 20 15 chr3 15853733 15853928 -211670650 + L1ME LINE L1 5614 5809 -312 315 301 26 7 chr3 15853995 15854148 -211670430 + HAL1b LINE L1 1179 1334 -14 2057 173 34 8 chr3 15854172 15854554 -211670024 + MSTD LTR MaLR 5 396 0 259 222 246 48 chr3 15854707 15854874 -211669704 - L3 LINE CR1 -104 1473 1274 1236 263 59 28 chr3 15855229 15855620 -211668958 - MLT1I LTR MaLR -1 408 6 235 271 0 0 chr3 15855644 15855692 -211668886 + polypurine Low_complexity Low_complexity 3 50 0 216 195 0 0 chr3 15856104 15856145 -211668433 - L2 LINE L2 -3 3310 3270 673 264 35 22 chr3 15856860 15857087 -211667491 - MIR SINE MIR -2 260 31 476 266 50 65 chr3 15858146 15858236 -211666342 + MIR SINE MIR 61 151 -111 2633 206 39 0 chr3 15858236 15858771 -211665807 + MER74A LTR ERVL 1 556 -2 476 266 50 65 chr3 15858771 15858879 -211665699 + MIR SINE MIR 151 256 -6 717 209 127 6 chr3 15858961 15859119 -211665459 - MER45A DNA AcHobo -1 177 1 278 305 67 19 chr3 15859930 15860035 -211664543 + L2 LINE L2 2957 3066 -206 335 263 23 4 chr3 15860176 15860312 -211664266 + MIR SINE MIR 57 252 -10 427 285 0 83 chr3 15860318 15860356 -211664222 + L2 LINE L2 3182 3222 -91 493 258 15 8 chr3 15860356 15860488 -211664090 - MER94 DNA DNA -1 133 1 427 285 0 83 chr3 15860488 15860593 -211663985 + L2 LINE L2 3222 3313 0 258 105 0 0 chr3 15860722 15860760 -211663818 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 353 299 174 43 chr3 15861205 15861389 -211663189 - MIR SINE MIR -5 257 50 215 104 83 42 chr3 15861471 15861519 -211663059 + MIR SINE MIR 81 130 -78 7095 67 0 0 chr3 15862288 15863181 -211661397 + L1PA5 LINE L1 5261 6153 -1 4819 229 28 13 chr3 15863181 15864610 -211659968 - L1MDa LINE L1 -2613 3927 2478 3715 170 60 30 chr3 15864604 15865426 -211659152 - L1MDa LINE L1 -4332 2208 1363 * 728 104 0 0 chr3 15865504 15865600 -211658978 + MLT1B LTR MaLR 284 379 -11 1807 164 49 31 chr3 15865614 15866041 -211658537 + Charlie1 DNA MER1_type 2276 2703 -58 2310 117 0 0 chr3 15866041 15866339 -211658239 - AluSx SINE Alu -14 298 1 1807 164 49 31 chr3 15866339 15866400 -211658178 + Charlie1 DNA MER1_type 2703 2761 0 807 291 98 29 chr3 15866408 15866889 -211657689 + MER113 DNA MER1_type? 1 514 -7 620 248 26 63 chr3 15867230 15867500 -211657078 + L1ME3A LINE L1 5692 5951 -219 2277 123 3 0 chr3 15867548 15867858 -211656720 + AluSx SINE Alu 1 311 -1 538 262 40 15 chr3 15868041 15868243 -211656335 + L1ME4a LINE L1 5716 5922 -199 377 252 35 63 chr3 15869026 15869169 -211655409 - MIR SINE MIR -95 167 29 397 201 147 49 chr3 15869483 15869667 -211654911 + MIR3 SINE MIR 5 206 -2 400 240 50 0 chr3 15869890 15869990 -211654588 - MIR SINE MIR -63 145 41 250 309 0 64 chr3 15870494 15870604 -211653974 - MIR SINE MIR -12 250 148 243 100 0 140 chr3 15870716 15870766 -211653812 + LTR16C LTR ERVL 188 230 -261 1026 157 136 79 chr3 15870792 15871072 -211653506 + LTR16C LTR ERVL 193 488 -3 362 308 91 14 chr3 15871073 15871216 -211653362 - MIR SINE MIR -97 165 12 226 338 14 0 chr3 15871280 15871351 -211653227 - L2 LINE L2 0 3313 3242 * 274 290 90 24 chr3 15871346 15871513 -211653065 + MIR SINE MIR 9 190 -18 256 265 121 99 chr3 15871493 15871716 -211652862 + L2 LINE L2 3044 3271 -1 * 241 364 0 0 chr3 15871933 15872010 -211652568 + CT-rich Low_complexity Low_complexity 1 77 0 283 196 0 0 chr3 15872239 15872290 -211652288 - MIR SINE MIR -143 119 69 361 272 161 33 chr3 15874845 15875025 -211649553 - MIR SINE MIR -12 250 48 330 326 108 0 chr3 15875176 15875305 -211649273 - MIR SINE MIR -41 221 79 244 286 41 20 chr3 15875327 15875425 -211649153 + MIR SINE MIR 117 216 -46 326 298 79 0 chr3 15875560 15875674 -211648904 + L2 LINE L2 3141 3263 -9 192 268 89 0 chr3 15875875 15875931 -211648647 - MIR3 SINE MIR -39 169 109 231 264 14 28 chr3 15876500 15876572 -211648006 - MIR SINE MIR -56 152 82 813 205 51 52 chr3 15876591 15877022 -211647556 + MLT1D LTR MaLR 1 505 0 321 267 92 42 chr3 15877029 15877149 -211647429 - MIR3 SINE MIR -6 202 77 181 304 185 0 chr3 15877408 15877500 -211647078 + MIR SINE MIR 117 225 -37 379 258 11 0 chr3 15877686 15877775 -211646803 + L2 LINE L2 2970 3059 -213 2272 108 0 3 chr3 15878204 15878500 -211646078 - AluSx SINE Alu -17 295 1 908 264 101 43 chr3 15878588 15878986 -211645592 - L2 LINE L2 -14 3299 2879 727 245 38 22 chr3 15879115 15879299 -211645279 - MIR SINE MIR -56 206 20 184 309 53 21 chr3 15880035 15880129 -211644449 - MIR SINE MIR -164 98 2 1024 249 31 90 chr3 15880433 15880942 -211643636 + MLT1K LTR MaLR 39 517 -71 197 143 0 41 chr3 15881145 15881194 -211643384 + (GGAGA)n Simple_repeat Simple_repeat 5 51 0 1944 136 82 0 chr3 15881502 15881832 -211642746 + L1MA5 LINE L1 5944 6300 0 296 284 147 0 chr3 15881873 15881982 -211642596 - MIR SINE MIR -63 145 21 545 328 187 28 chr3 15882752 15883577 -211641001 + L2 LINE L2 2320 3270 -2 660 138 49 49 chr3 15883767 15883841 -211640737 - MIR SINE MIR -104 158 82 2369 105 39 30 chr3 15883841 15884202 -211640376 + THE1B LTR MaLR 1 364 0 660 138 49 49 chr3 15884202 15884250 -211640328 - MIR SINE MIR -179 83 36 465 219 47 0 chr3 15885001 15885129 -211639449 + L1ME LINE L1 5657 5790 -331 748 309 28 12 chr3 15885417 15885669 -211638909 - MIR SINE MIR -4 258 3 548 231 27 20 chr3 15886022 15886169 -211638409 - MIR SINE MIR -36 226 79 611 154 114 20 chr3 15886519 15886668 -211637910 + LTR33A LTR ERVL 352 514 -9 733 253 85 86 chr3 15887146 15887601 -211636977 + MLT1J LTR MaLR 19 450 0 319 343 21 29 chr3 15887701 15887841 -211636737 + L2 LINE L2 2503 2641 -673 296 232 29 14 chr3 15888007 15888076 -211636502 + MIR SINE MIR 36 105 -157 526 206 84 0 chr3 15888085 15888192 -211636386 + MIR SINE MIR 7 122 -140 204 289 0 0 chr3 15888212 15888302 -211636276 + (CCCA)n Simple_repeat Simple_repeat 3 92 0 180 152 0 0 chr3 15888421 15888454 -211636124 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 532 204 15 0 chr3 15888699 15888831 -211635747 - MER20B DNA MER1_type -69 714 581 736 309 113 0 chr3 15888983 15889310 -211635268 - MER20B DNA MER1_type -267 516 153 188 240 67 67 chr3 15889599 15889674 -211634904 + MIR SINE MIR 79 153 -109 758 284 43 17 chr3 15889758 15889990 -211634588 + MIR SINE MIR 22 259 -3 361 333 87 0 chr3 15891327 15891477 -211633101 - MIR SINE MIR -78 184 22 505 276 32 60 chr3 15891529 15891748 -211632830 - MIR SINE MIR -14 248 36 303 262 10 48 chr3 15892336 15892439 -211632139 + LTR67 LTR ERVL 4 102 -455 263 352 106 7 chr3 15892476 15892618 -211631960 + MIR3 SINE MIR 52 207 -1 618 282 94 4 chr3 15894175 15894409 -211630169 + MLT1H LTR MaLR 3 257 -292 374 248 0 80 chr3 15894615 15894686 -211629892 + MIR SINE MIR 148 206 -56 1023 110 0 0 chr3 15894686 15894841 -211629737 + L1MB3 LINE L1 6028 6182 -1 374 248 0 80 chr3 15894841 15894894 -211629684 + MIR SINE MIR 206 262 0 532 305 98 11 chr3 15895062 15895236 -211629342 - MIR3 SINE MIR -10 198 10 302 250 161 24 chr3 15895805 15895929 -211628649 - MER5A DNA MER1_type -1 188 48 489 255 142 66 chr3 15896296 15896767 -211627811 - HAL1 LINE L1 -1399 1108 602 263 160 20 20 chr3 15897614 15897664 -211626914 - MIR SINE MIR -110 152 103 198 268 0 18 chr3 15897704 15897760 -211626818 + MIR SINE MIR 161 215 -47 632 130 0 0 chr3 15897762 15897862 -211626716 + L1MB3 LINE L1 6028 6127 -56 305 318 104 55 chr3 15898286 15898487 -211626091 - MIR SINE MIR -50 212 2 1786 179 7 3 chr3 15898673 15898981 -211625597 - AluJb SINE Alu -3 309 1 2379 71 37 0 chr3 15899084 15899378 -211625200 + AluSg SINE Alu 1 305 -5 429 295 0 0 chr3 15899387 15899482 -211625096 + MER5A DNA MER1_type 15 109 -80 270 261 192 31 chr3 15899634 15899764 -211624814 - MIR3 SINE MIR -46 162 12 285 295 13 94 chr3 15900272 15900421 -211624157 + MIR SINE MIR 14 150 -112 2437 224 38 46 chr3 15900423 15900634 -211623944 + L1ME3 LINE L1 5451 5662 -500 1737 105 0 13 chr3 15900634 15900872 -211623706 + AluY SINE Alu 71 305 -6 2437 224 38 46 chr3 15900872 15901352 -211623226 + L1ME3 LINE L1 5662 6136 -26 242 207 16 8 chr3 15901517 15901580 -211622998 + MIR SINE MIR 93 152 -63 1058 88 0 7 chr3 15901692 15901828 -211622750 + AluSq/x SINE Alu 1 135 -178 2131 117 0 3 chr3 15901828 15902150 -211622428 + AluSx SINE Alu 1 321 0 541 260 9 24 chr3 15902588 15902759 -211621819 + L2 LINE L2 3108 3312 -1 734 257 65 19 chr3 15903070 15903284 -211621294 + MER58A DNA MER1_type 1 224 0 709 256 12 19 chr3 15903310 15903470 -211621108 - MIR SINE MIR -55 207 49 656 218 103 0 chr3 15904052 15904208 -211620370 + MIR SINE MIR 86 257 -5 577 261 110 57 chr3 15904741 15905124 -211619454 - L2 LINE L2 -102 3211 2809 268 245 0 0 chr3 15905221 15905270 -211619308 + L2 LINE L2 3214 3262 -10 256 258 163 0 chr3 15905937 15906085 -211618493 - MIR SINE MIR -55 207 32 278 337 10 0 chr3 15906273 15906374 -211618204 - L2 LINE L2 -25 3247 3146 1403 274 117 36 chr3 15907008 15907517 -211617061 + L2 LINE L2 2221 2687 -626 2457 66 10 0 chr3 15907517 15907819 -211616759 + AluY SINE Alu 1 305 -6 1403 274 117 36 chr3 15907819 15908299 -211616279 + L2 LINE L2 2687 3292 -21 592 267 36 0 chr3 15908631 15908796 -211615782 - MIR SINE MIR -33 229 59 247 261 101 43 chr3 15909177 15909315 -211615263 + L2 LINE L2 3009 3154 -159 1481 182 4 44 chr3 15909333 15909608 -211614970 + AluJb SINE Alu 21 284 -28 198 150 0 0 chr3 15909608 15909648 -211614930 + (TA)n Simple_repeat Simple_repeat 1 40 0 425 277 65 19 chr3 15909673 15909684 -211614894 + L2 LINE L2 3152 3161 -152 2079 135 30 0 chr3 15909684 15909981 -211614597 - AluSx SINE Alu -6 306 1 425 277 65 19 chr3 15909981 15910044 -211614534 + L2 LINE L2 3161 3220 -93 291 28 0 0 chr3 15910044 15910080 -211614498 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 425 277 65 19 chr3 15910080 15910159 -211614419 + L2 LINE L2 3220 3313 0 233 349 0 0 chr3 15910384 15910450 -211614128 - L2 LINE L2 0 3313 3248 498 179 216 56 chr3 15910464 15910626 -211613952 - MER20B DNA MER1_type -24 195 8 472 303 26 13 chr3 15910967 15911122 -211613456 - MIR SINE MIR -8 254 98 190 302 0 0 chr3 15911976 15912019 -211612559 + L2 LINE L2 3210 3252 -20 2168 211 69 66 chr3 15912026 15912740 -211611838 + L1ME1 LINE L1 5449 6164 -2 2095 130 0 10 chr3 15915095 15915387 -211609191 - AluJb SINE Alu -23 289 1 412 239 156 36 chr3 15915541 15915708 -211608870 - MIR SINE MIR -64 198 12 7225 33 0 3 chr3 15915768 15917044 -211607534 + L1PA5 LINE L1 4894 6167 0 340 216 139 9 chr3 15917057 15917215 -211607363 - MIR SINE MIR -13 249 71 493 283 53 13 chr3 15917760 15917912 -211606666 - MIR SINE MIR -63 199 42 739 321 17 0 chr3 15918108 15918405 -211606173 + L2 LINE L2 2767 3067 -246 381 303 92 7 chr3 15918569 15918711 -211605867 + L2 LINE L2 3159 3312 -1 597 217 0 0 chr3 15919294 15919474 -211605104 + (CA)n Simple_repeat Simple_repeat 1 180 0 510 217 0 0 chr3 15919519 15919685 -211604893 + (CA)n Simple_repeat Simple_repeat 1 166 0 542 280 13 19 chr3 15919916 15920073 -211604505 + MIR SINE MIR 13 168 -94 689 225 30 55 chr3 15920537 15920737 -211603841 + MIR SINE MIR 10 204 -58 235 232 158 0 chr3 15923722 15923817 -211600761 + MIR SINE MIR 37 146 -62 511 269 163 29 chr3 15924727 15925076 -211599502 - MER113 DNA MER1_type? -125 396 1 267 319 130 32 chr3 15925397 15925613 -211598965 + MIR SINE MIR 20 256 -6 433 302 133 44 chr3 15926226 15926729 -211597849 + L2 LINE L2 2240 2787 -527 581 284 147 4 chr3 15926885 15927110 -211597468 + Charlie8 DNA MER1_type 9 265 -2152 346 316 26 0 chr3 15927550 15927664 -211596914 - MIR SINE MIR -29 233 117 1357 212 3 35 chr3 15927865 15927954 -211596624 + AluJo SINE Alu 33 123 -189 2375 105 0 0 chr3 15927954 15928249 -211596329 - AluSx SINE Alu -17 295 1 1357 212 3 35 chr3 15928249 15928447 -211596131 + AluJo SINE Alu 123 311 -1 423 245 46 58 chr3 15928477 15928653 -211595925 + MIR SINE MIR 42 214 -48 267 237 158 0 chr3 15929095 15929171 -211595407 + L2 LINE L2 3179 3266 -6 297 0 0 0 chr3 15929181 15929214 -211595364 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 741 93 0 0 chr3 15929213 15929320 -211595258 + (GA)n Simple_repeat Simple_repeat 2 108 0 185 178 22 0 chr3 15929466 15929511 -211595067 + MIR SINE MIR 70 115 -147 1090 141 0 12 chr3 15930579 15930742 -211593836 + FRAM SINE Alu 2 162 -14 301 398 47 21 chr3 15930951 15931230 -211593348 + L2 LINE L2 2985 3270 -2 375 280 47 23 chr3 15932308 15932457 -211592121 - L1MC4 LINE L1 -1306 7016 1995 471 311 89 26 chr3 15934054 15934244 -211590334 + MIR SINE MIR 59 260 -2 1303 288 104 18 chr3 15934523 15935121 -211589457 + L2 LINE L2 1792 2440 -874 1577 272 71 53 chr3 15935147 15935849 -211588729 + MER21B LTR ERV1 25 739 -124 1021 262 192 8 chr3 15935862 15936572 -211588006 + L2 LINE L2 2458 3313 0 449 271 15 41 chr3 15936843 15937024 -211587554 + MIR SINE MIR 19 192 -62 456 299 85 24 chr3 15937345 15937639 -211586939 - L2 LINE L2 -419 2895 2584 196 208 42 0 chr3 15937693 15937741 -211586837 - L2 LINE L2 -831 2483 2434 1962 168 54 0 chr3 15938440 15938810 -211585768 + MLT1B LTR MaLR 1 390 0 719 289 61 48 chr3 15939041 15939563 -211585015 - L1ME4a LINE L1 -3 6118 5590 378 262 14 64 chr3 15939832 15939973 -211584605 - MIR SINE MIR -118 144 11 624 276 113 0 chr3 15940448 15940669 -211583909 + MIR SINE MIR 11 256 -6 1101 259 71 25 chr3 15942764 15943212 -211581366 - LTR33 LTR ERVL -52 469 1 259 250 48 29 chr3 15943756 15943860 -211580718 - MIR3 SINE MIR -41 167 62 433 217 22 0 chr3 15944032 15944124 -211580454 - MIR SINE MIR -58 150 100 574 304 31 5 chr3 15945162 15945353 -211579225 + MIR SINE MIR 43 238 -24 1875 148 34 17 chr3 15945355 15945653 -211578925 - AluJo SINE Alu -4 308 6 405 304 17 0 chr3 15946180 15946295 -211578283 + MIR3 SINE MIR 42 158 -50 437 214 62 9 chr3 15946361 15946473 -211578105 - MER103 DNA DNA -46 120 3 196 276 0 0 chr3 15946523 15946581 -211577997 + MIR3 SINE MIR 151 208 0 347 67 0 33 chr3 15946986 15947046 -211577532 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 983 217 70 60 chr3 15948085 15948454 -211576124 - MER113 DNA MER1_type? -147 374 2 290 273 40 0 chr3 15948454 15948553 -211576025 - MIR3 SINE MIR -47 161 59 594 234 0 0 chr3 15948788 15949006 -211575572 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 468 0 0 0 chr3 15949166 15949218 -211575360 + (CA)n Simple_repeat Simple_repeat 2 53 0 315 350 56 12 chr3 15949247 15949407 -211575171 + MIR3 SINE MIR 16 182 -26 385 298 63 13 chr3 15949778 15949936 -211574642 + MIR SINE MIR 37 202 -60 641 315 106 17 chr3 15949999 15950672 -211573906 - L2 LINE L2 0 3313 2572 2615 216 17 25 chr3 15951058 15951646 -211572932 + MER82 DNA MER2_type 1 583 -70 290 253 94 6 chr3 15951835 15951993 -211572585 - MIR SINE MIR -70 192 14 3152 71 11 13 chr3 15952463 15952911 -211571667 - L1PA13 LINE L1 0 6163 5717 258 200 83 0 chr3 15952919 15952979 -211571599 + MIR SINE MIR 79 143 -119 242 257 71 82 chr3 15953037 15953221 -211571357 - MIR SINE MIR -50 212 32 642 262 112 5 chr3 15953319 15953533 -211571045 + MIR SINE MIR 13 249 -13 557 241 83 7 chr3 15953673 15953818 -211570760 - MIR SINE MIR -92 170 15 208 322 111 0 chr3 15954299 15954389 -211570189 + MIR SINE MIR 25 124 -84 453 267 154 39 chr3 15954406 15954691 -211569887 + MER102b DNA MER1_type 22 339 -2 180 237 0 0 chr3 15954811 15954849 -211569729 + L2 LINE L2 3267 3304 -9 704 267 26 10 chr3 15955370 15955565 -211569013 + MIR SINE MIR 15 212 -50 331 215 0 0 chr3 15956360 15956425 -211568153 + MLT1L LTR MaLR 327 391 -224 399 267 48 0 chr3 15957461 15957566 -211567012 - Charlie8 DNA MER1_type -2246 171 62 8032 232 65 13 chr3 15958821 15961355 -211563223 + L1MEc LINE L1 35 2657 -3558 625 226 0 30 chr3 15961353 15961517 -211563061 + L1M4 LINE L1 5046 5204 -942 * 1864 179 38 3 chr3 15961596 15961942 -211562636 - MLT1A1 LTR MaLR -7 358 1 749 266 20 23 chr3 15961949 15962255 -211562323 - LTR33 LTR ERVL -125 396 29 310 298 0 39 chr3 15962277 15962381 -211562197 - MER81 DNA DNA -14 100 1 240 289 13 13 chr3 15962411 15962487 -211562091 - MIR SINE MIR -101 161 86 382 335 109 22 chr3 15963076 15963306 -211561272 + L3 LINE CR1 442 691 -886 197 336 10 29 chr3 15963486 15963590 -211560988 + L3 LINE CR1 915 1016 -561 581 306 73 37 chr3 15963593 15963920 -211560658 - MER102b DNA MER1_type -2 339 1 251 296 0 0 chr3 15964124 15964178 -211560400 + (CCCA)n Simple_repeat Simple_repeat 4 57 0 696 164 11 38 chr3 15964178 15964361 -211560217 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 898 244 68 0 chr3 15964389 15964610 -211559968 + MIR SINE MIR 5 240 -22 422 318 54 14 chr3 15964643 15964791 -211559787 - L2 LINE L2 -5 3267 3114 2680 245 81 39 chr3 15965193 15965366 -211559212 + L1MC4 LINE L1 6757 6921 -1121 231 36 0 0 chr3 15965366 15965394 -211559184 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2680 245 81 39 chr3 15965394 15966178 -211558400 + L1MC4 LINE L1 6921 7755 -287 4683 167 38 3 chr3 15966184 15967213 -211557365 + L1MB5 LINE L1 5100 6165 -9 542 215 47 130 chr3 15967222 15967542 -211557036 + L1MC4 LINE L1 7749 8042 0 709 291 52 3 chr3 15967595 15967901 -211556677 + L1MC4 LINE L1 7689 8009 -33 936 302 86 62 chr3 15970453 15971324 -211553254 + L2 LINE L2 1880 2771 -543 309 143 20 0 chr3 15971329 15971378 -211553200 - MER3 DNA MER1_type 0 209 160 683 198 41 0 chr3 15971387 15971508 -211553070 - FLAM_C SINE Alu -16 127 2 684 208 84 7 chr3 15971509 15971663 -211552915 - MER3 DNA MER1_type -43 166 1 270 328 148 15 chr3 15971663 15971891 -211552687 + L2 LINE L2 2769 3023 -249 331 109 0 31 chr3 15971900 15971964 -211552614 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2039 122 71 40 chr3 15971964 15972317 -211552261 + THE1B LTR MaLR 1 364 0 5195 77 20 10 chr3 15972317 15973010 -211551568 + THE1B-int LTR MaLR 1 700 -880 4323 96 2 0 chr3 15972996 15973558 -211551020 + THE1B-int LTR MaLR 1018 1580 0 * 2103 135 72 29 chr3 15973558 15973907 -211550671 + THE1B LTR MaLR 1 364 0 913 131 17 0 chr3 15973921 15974096 -211550482 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3267 173 41 0 chr3 15974836 15975421 -211549157 + L1MB3 LINE L1 5573 6181 -2 309 314 73 0 chr3 15975940 15976064 -211548514 - MIR SINE MIR -21 241 109 731 315 14 0 chr3 15976320 15976542 -211548036 - MIR SINE MIR -15 247 23 403 269 106 14 chr3 15976551 15976692 -211547886 + L2 LINE L2 3116 3269 -3 291 259 159 59 chr3 15977040 15977210 -211547368 - MER5A DNA MER1_type -1 188 2 559 291 42 12 chr3 15977620 15977785 -211546793 + MER5A DNA MER1_type 20 189 0 375 243 29 0 chr3 15977806 15977918 -211546660 + MER5A DNA MER1_type 4 119 -70 745 233 157 80 chr3 15978882 15979489 -211545089 - L2 LINE L2 -26 3287 2625 324 279 27 0 chr3 15979523 15979634 -211544944 + L2 LINE L2 2896 3009 -263 40233 52 3 1 chr3 15979809 15985552 -211539026 + L1PA5 LINE L1 399 6158 0 195 274 20 0 chr3 15985556 15985607 -211538971 + MIR SINE MIR 97 148 -114 28 29 0 0 chr3 15985965 15986000 -211538578 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 15986131 15986155 -211538423 + AT_rich Low_complexity Low_complexity 1 24 0 284 226 11 32 chr3 15988870 15988963 -211535615 + T-rich Low_complexity Low_complexity 3 93 0 23 0 0 0 chr3 15989485 15989508 -211535070 + GC_rich Low_complexity Low_complexity 1 23 0 225 94 0 0 chr3 15989741 15989773 -211534805 + (CCG)n Simple_repeat Simple_repeat 3 34 0 279 241 43 0 chr3 15989793 15989909 -211534669 + (CCG)n Simple_repeat Simple_repeat 3 123 0 * 308 270 26 26 chr3 15989831 15989983 -211534595 + C-rich Low_complexity Low_complexity 4 155 0 591 299 57 13 chr3 15991991 15992299 -211532279 - Charlie8 DNA MER1_type -2142 275 41 260 303 17 42 chr3 15992517 15992636 -211531942 + MIR SINE MIR 34 149 -59 213 39 0 0 chr3 15992639 15992665 -211531913 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 15993745 15993767 -211530811 + AT_rich Low_complexity Low_complexity 1 22 0 210 362 53 0 chr3 15993893 15993987 -211530591 - MIR SINE MIR -10 252 154 722 263 61 0 chr3 15994124 15994322 -211530256 + LTR16A1 LTR ERVL 246 455 -2 229 210 175 0 chr3 15994322 15994406 -211530172 - MIR SINE MIR -46 162 60 279 355 43 48 chr3 15994914 15995145 -211529433 + L3 LINE CR1 760 989 -588 1398 253 80 6 chr3 15995549 15995913 -211528665 + LTR16C LTR ERVL 88 478 -13 1318 280 77 47 chr3 15996003 15997127 -211527451 + L1MC4a LINE L1 4741 5873 -248 761 171 20 0 chr3 15997127 15997279 -211527299 - L1MB7 LINE L1 0 6184 6030 1318 280 77 47 chr3 15997279 15997321 -211527257 + L1MC4a LINE L1 5873 5912 -209 258 116 0 0 chr3 15997328 15997371 -211527207 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 279 113 60 chr3 15997494 15997620 -211526958 - L2 LINE L2 -435 2879 2761 1126 179 20 0 chr3 15997620 15997821 -211526757 + MER3 DNA MER1_type 5 209 0 359 279 113 60 chr3 15997821 15998127 -211526451 - L2 LINE L2 -553 2761 2424 209 206 29 0 chr3 15998125 15998193 -211526385 + L2 LINE L2 2840 2909 -404 * 349 267 30 10 chr3 15998486 15998587 -211525991 + L2 LINE L2 3211 3313 0 1041 63 0 14 chr3 15999107 15999249 -211525329 + L1PA5 LINE L1 6015 6154 0 609 192 120 48 chr3 15999421 15999588 -211524990 - MIR SINE MIR -1 261 83 354 303 127 7 chr3 15999834 15999976 -211524602 + MIR SINE MIR 92 250 -12 1578 120 25 104 chr3 16000280 16000606 -211523972 + AluYb8 SINE Alu 1 300 -18 2001 182 14 6 chr3 16001025 16001387 -211523191 - MLT1A1 LTR MaLR 0 365 1 315 224 0 0 chr3 16001402 16001478 -211523100 + (TG)n Simple_repeat Simple_repeat 1 76 0 381 280 27 54 chr3 16002867 16003088 -211521490 + MIR SINE MIR 18 232 -30 394 290 94 37 chr3 16003198 16003495 -211521083 + MLT1I LTR MaLR 68 428 -18 332 267 0 13 chr3 16003516 16003591 -211520987 - L2 LINE L2 -15 3298 3225 214 346 25 12 chr3 16004073 16004154 -211520424 - L2 LINE L2 -2 3311 3230 332 323 87 0 chr3 16005012 16005139 -211519439 - MIR SINE MIR -55 153 16 180 313 0 0 chr3 16005781 16005829 -211518749 - L2 LINE L2 0 3313 3266 243 320 54 14 chr3 16005846 16005993 -211518585 - MIR3 SINE MIR -17 191 39 204 236 0 36 chr3 16006410 16006465 -211518113 + GA-rich Low_complexity Low_complexity 4 56 0 249 33 0 0 chr3 16006594 16006624 -211517954 + (GGAGA)n Simple_repeat Simple_repeat 3 32 0 292 256 12 23 chr3 16006819 16006905 -211517673 + MIR3 SINE MIR 92 176 -32 326 253 75 124 chr3 16007061 16007247 -211517331 - MER5A DNA MER1_type -6 183 7 208 305 0 0 chr3 16007724 16007806 -211516772 + MIR SINE MIR 130 211 -51 279 224 60 0 chr3 16007951 16008018 -211516560 + L2 LINE L2 2917 2987 -285 1180 163 38 14 chr3 16008140 16008349 -211516229 - MER20 DNA MER1_type 0 219 6 346 392 20 7 chr3 16008370 16008518 -211516060 + L2 LINE L2 3123 3272 0 389 281 10 10 chr3 16008531 16008627 -211515951 - MIR3 SINE MIR -98 110 15 232 291 223 0 chr3 16008759 16008862 -211515716 - MIR SINE MIR -77 185 60 314 321 53 49 chr3 16009087 16009498 -211515080 + L1MEd LINE L1 511 923 -5196 * 404 227 55 0 chr3 16009487 16009597 -211514981 - L1MD3 LINE L1 -1 7994 7879 891 240 0 6 chr3 16010120 16010295 -211514283 + MLT1G1 LTR MaLR 1 174 -421 1197 153 0 30 chr3 16010300 16010503 -211514075 + Tigger2a DNA MER2_type 1 197 -237 1195 98 0 6 chr3 16010506 16010670 -211513908 - AluSg/x SINE Alu -17 295 133 1402 113 86 0 chr3 16010670 16010891 -211513687 + Tigger2a DNA MER2_type 195 434 0 772 230 20 33 chr3 16010895 16011257 -211513321 + MLT1G1 LTR MaLR 140 593 0 802 234 83 5 chr3 16011690 16011882 -211512696 - MIR SINE MIR -40 222 16 1936 189 25 27 chr3 16012113 16012283 -211512295 - MLT1A1 LTR MaLR 0 365 196 2727 90 98 5 chr3 16012283 16012693 -211511885 + LTR7 LTR ERV1 1 448 -2 1936 189 25 27 chr3 16012693 16012888 -211511690 - MLT1A1 LTR MaLR -169 196 1 427 250 8 16 chr3 16012938 16013062 -211511516 + L1ME3A LINE L1 4904 5026 -1120 1723 209 74 19 chr3 16013081 16013502 -211511076 + L1ME3A LINE L1 5718 6161 -9 365 223 96 81 chr3 16013558 16013755 -211510823 + L1MB7 LINE L1 5264 5463 -2345 6147 249 54 41 chr3 16013757 16013852 -211510726 + L1MEc LINE L1 10 102 -6113 291 85 0 0 chr3 16013852 16013899 -211510679 + (CA)n Simple_repeat Simple_repeat 2 48 0 6147 249 54 41 chr3 16013899 16015399 -211509179 + L1MEc LINE L1 102 1608 -4607 3334 184 37 18 chr3 16015399 16015699 -211508879 + L1MB7 LINE L1 5493 5786 -398 2484 162 18 0 chr3 16015699 16016088 -211508490 + MSTD LTR MaLR 1 396 0 3334 184 37 18 chr3 16016088 16016465 -211508113 + L1MB7 LINE L1 5786 6183 -1 6147 249 54 41 chr3 16016465 16017282 -211507296 + L1MEc LINE L1 1608 2413 -3802 1648 180 78 30 chr3 16017867 16018239 -211506339 + MLT1B LTR MaLR 1 390 0 445 226 146 33 chr3 16018472 16018684 -211505894 - MIR SINE MIR -19 243 8 2660 43 0 0 chr3 16019425 16019724 -211504854 + AluY SINE Alu 1 299 -12 495 287 91 48 chr3 16021063 16021293 -211503285 - MIR SINE MIR -2 260 21 568 265 100 22 chr3 16022250 16022480 -211502098 + LTR16C LTR ERVL 244 491 0 271 288 47 34 chr3 16022925 16023084 -211501494 + MIR SINE MIR 34 190 -18 540 221 101 27 chr3 16023296 16023445 -211501133 + MLT1J2 LTR MaLR 291 450 0 691 216 226 19 chr3 16023497 16023705 -211500873 - MIR SINE MIR -11 251 1 208 289 0 0 chr3 16023726 16023771 -211500807 + MIR SINE MIR 206 250 -12 222 274 81 0 chr3 16024921 16024983 -211499595 - MIR SINE MIR -112 150 84 213 308 31 0 chr3 16025026 16025091 -211499487 + MER5B DNA MER1_type 1 67 -111 302 321 28 18 chr3 16025291 16025400 -211499178 - MIR3 SINE MIR -16 192 83 202 258 70 27 chr3 16026014 16026139 -211498439 + MIR SINE MIR 19 147 -61 620 230 86 86 chr3 16026514 16026818 -211497760 - L1ME3A LINE L1 -8 6162 5859 594 215 98 0 chr3 16026815 16026978 -211497600 - L1ME3A LINE L1 -727 5435 5257 * 1098 262 19 22 chr3 16028451 16028764 -211495814 - MLT1I LTR MaLR 0 409 98 473 144 144 0 chr3 16029030 16029134 -211495444 + MER103 DNA DNA 2 120 -46 624 204 32 81 chr3 16029171 16029357 -211495221 + MER5B DNA MER1_type 1 177 -1 290 309 43 21 chr3 16029737 16029831 -211494747 + L2 LINE L2 3161 3256 -16 219 284 46 55 chr3 16030409 16030518 -211494060 - MER5A DNA MER1_type 0 189 82 1678 219 73 2 chr3 16030606 16031057 -211493521 + LTR16C LTR ERVL 1 483 -8 393 271 16 25 chr3 16031489 16031611 -211492967 + Charlie8 DNA MER1_type 92 212 -2205 418 322 82 28 chr3 16032896 16033151 -211491427 - L2 LINE L2 -168 3104 2836 254 198 139 0 chr3 16033374 16033460 -211491118 - MIR SINE MIR -71 137 40 225 224 35 138 chr3 16033886 16034002 -211490576 - MIR3 SINE MIR -47 161 58 192 224 0 0 chr3 16034273 16034340 -211490238 + A-rich Low_complexity Low_complexity 1 67 0 456 280 63 21 chr3 16034471 16034660 -211489918 - MER117 DNA MER1_type 0 197 1 406 242 105 17 chr3 16034710 16034839 -211489739 - MIR SINE MIR -62 146 22 685 306 23 31 chr3 16035883 16036144 -211488434 - MIR SINE MIR -2 260 2 279 345 17 11 chr3 16036322 16036496 -211488082 + MER117 DNA MER1_type 6 180 -17 266 179 291 0 chr3 16036859 16036977 -211487601 - MIR SINE MIR -80 182 23 267 182 0 18 chr3 16037020 16037075 -211487503 + MER5B DNA MER1_type 119 172 -6 428 302 102 8 chr3 16037085 16037349 -211487229 - MIR SINE MIR -19 243 8 293 226 104 43 chr3 16037354 16037469 -211487109 + L1ME2 LINE L1 6041 6162 -2 484 229 49 33 chr3 16037711 16037833 -211486745 + L2 LINE L2 3147 3270 -2 1009 166 13 0 chr3 16038276 16038433 -211486145 + FRAM SINE Alu 2 160 -6 428 221 55 19 chr3 16038887 16039015 -211485563 + MIR SINE MIR 60 191 -62 336 271 35 12 chr3 16039135 16039220 -211485358 + MIR SINE MIR 12 98 -164 233 213 0 21 chr3 16039270 16039317 -211485261 + L2 LINE L2 3217 3262 -10 382 250 30 0 chr3 16039825 16039925 -211484653 - MER5A DNA MER1_type -83 106 4 643 253 110 0 chr3 16040636 16040790 -211483788 - MER5B DNA MER1_type -6 172 2 2603 180 5 0 chr3 16041806 16042228 -211482350 - MSTB LTR MaLR 0 426 3 190 183 49 12 chr3 16042966 16043048 -211481530 + CT-rich Low_complexity Low_complexity 2 86 0 468 265 15 22 chr3 16043331 16043467 -211481111 - L2 LINE L2 0 3272 3138 471 345 113 14 chr3 16044004 16044279 -211480299 + L1ME LINE L1 5517 5818 -303 290 250 217 0 chr3 16044299 16044391 -211480187 - MIR3 SINE MIR -8 200 89 668 213 45 93 chr3 16044677 16044894 -211479684 - MER113 DNA MER1_type? -191 330 104 1786 123 77 0 chr3 16044894 16045154 -211479424 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr3 16045154 16045188 -211479390 + (TAA)n Simple_repeat Simple_repeat 2 35 0 668 213 45 93 chr3 16045188 16045303 -211479275 - MER113 DNA MER1_type? -415 106 13 1143 264 140 5 chr3 16045690 16046354 -211478224 - L2 LINE L2 0 3313 2565 411 296 22 15 chr3 16046671 16046806 -211477772 + L2 LINE L2 3137 3272 0 228 247 0 0 chr3 16046821 16046906 -211477672 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 1362 134 11 22 chr3 16046942 16046969 -211477609 - L1MA9 LINE L1 -17 6161 6135 634 153 9 0 chr3 16046969 16047080 -211477498 - L1MA9 LINE L1 -5 6307 6196 1362 134 11 22 chr3 16047080 16047318 -211477260 - L1MA9 LINE L1 -43 6135 5893 208 328 0 0 chr3 16047769 16047827 -211476751 - MIR SINE MIR -59 149 92 376 246 70 18 chr3 16047844 16047958 -211476620 - L2 LINE L2 -218 3054 2935 218 336 44 26 chr3 16048008 16048121 -211476457 - L2 LINE L2 -468 2846 2732 827 231 99 18 chr3 16048157 16048378 -211476200 + MIR SINE MIR 4 242 -20 206 320 39 39 chr3 16048446 16048549 -211476029 - L2 LINE L2 -606 2708 2606 1036 209 33 9 chr3 16048549 16048759 -211475819 + MER58A DNA MER1_type 8 222 -2 222 227 187 13 chr3 16049538 16049613 -211474965 + MIR SINE MIR 58 145 -117 569 206 44 37 chr3 16049924 16050060 -211474518 - MIR SINE MIR -56 152 16 493 326 62 6 chr3 16050363 16050541 -211474037 + MIR SINE MIR 15 202 -60 201 286 18 0 chr3 16050594 16050650 -211473928 + C-rich Low_complexity Low_complexity 5 61 0 670 261 22 6 chr3 16051024 16051204 -211473374 + MIR SINE MIR 5 187 -75 23 33 0 0 chr3 16051204 16051234 -211473344 + AT_rich Low_complexity Low_complexity 1 30 0 254 229 31 0 chr3 16051266 16051362 -211473216 + (TA)n Simple_repeat Simple_repeat 2 100 0 281 172 40 17 chr3 16051381 16051555 -211473023 + (TA)n Simple_repeat Simple_repeat 2 179 0 303 166 61 31 chr3 16051572 16051735 -211472843 + (TA)n Simple_repeat Simple_repeat 2 169 0 * 334 166 39 72 chr3 16051642 16051823 -211472755 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 217 193 45 45 chr3 16051756 16051932 -211472646 + (TTA)n Simple_repeat Simple_repeat 3 178 0 * 341 195 27 60 chr3 16051878 16051990 -211472588 + (TATAA)n Simple_repeat Simple_repeat 2 107 -73 211 71 48 0 chr3 16051990 16052032 -211472546 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 341 195 27 60 chr3 16052032 16052104 -211472474 + (TATAA)n Simple_repeat Simple_repeat 107 180 0 192 268 109 36 chr3 16053382 16053520 -211471058 + MIR SINE MIR 40 187 -75 219 88 0 0 chr3 16053568 16053602 -211470976 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 807 284 126 25 chr3 16053627 16054138 -211470440 - L2 LINE L2 -58 3255 2677 336 189 0 0 chr3 16054565 16054639 -211469939 + GA-rich Low_complexity Low_complexity 1 74 0 899 199 58 6 chr3 16055237 16055408 -211469170 + MER5A DNA MER1_type 1 180 -9 501 275 14 7 chr3 16055439 16055577 -211469001 + MIR SINE MIR 11 149 -113 537 44 0 0 chr3 16055651 16055719 -211468859 + (ATG)n Simple_repeat Simple_repeat 1 68 0 807 271 152 27 chr3 16055904 16056306 -211468272 - L2 LINE L2 -1 3312 2861 193 304 240 0 chr3 16056321 16056446 -211468132 + MIR SINE MIR 97 251 -11 559 288 6 6 chr3 16056970 16057130 -211467448 + MIR SINE MIR 103 262 0 211 381 82 17 chr3 16057391 16057622 -211466956 + L2 LINE L2 3026 3271 -1 3233 236 53 52 chr3 16058298 16059006 -211465572 - L1MC4 LINE L1 -161 7881 7170 1842 139 10 33 chr3 16059006 16059307 -211465271 - AluJo SINE Alu -18 294 1 3233 236 53 52 chr3 16059307 16059620 -211464958 - L1MC4 LINE L1 -872 7170 6859 348 244 168 8 chr3 16059726 16059845 -211464733 + MIR SINE MIR 10 147 -115 358 64 0 0 chr3 16060098 16060145 -211464433 - L1PA5 LINE L1 -408 5746 5700 3301 36 0 0 chr3 16060145 16060532 -211464046 + L1PA5 LINE L1 5759 6147 -7 230 299 41 52 chr3 16060785 16060882 -211463696 + L2 LINE L2 3161 3256 -16 493 326 62 6 chr3 16061529 16061707 -211462871 - MIR SINE MIR -60 202 15 569 206 44 37 chr3 16062010 16062146 -211462432 + MIR SINE MIR 16 152 -56 222 227 187 13 chr3 16062457 16062532 -211462046 - MIR SINE MIR -117 145 58 1036 209 33 9 chr3 16063311 16063521 -211461057 - MER58A DNA MER1_type -2 222 8 206 320 39 39 chr3 16063521 16063624 -211460954 + L2 LINE L2 2606 2708 -606 827 231 99 18 chr3 16063692 16063913 -211460665 - MIR SINE MIR -20 242 4 218 336 44 26 chr3 16063949 16064062 -211460516 + L2 LINE L2 2732 2846 -468 376 246 70 18 chr3 16064112 16064226 -211460352 + L2 LINE L2 2935 3054 -218 208 328 0 0 chr3 16064243 16064301 -211460277 + MIR SINE MIR 92 149 -59 1362 133 12 23 chr3 16064752 16064990 -211459588 + L1MA9 LINE L1 5893 6281 -31 634 153 9 0 chr3 16064990 16065101 -211459477 + L1MA9 LINE L1 6196 6307 -5 1362 133 12 23 chr3 16065101 16065128 -211459450 + L1MA9 LINE L1 6281 6307 -5 228 247 0 0 chr3 16065164 16065249 -211459329 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 411 296 22 15 chr3 16065264 16065399 -211459179 - L2 LINE L2 0 3272 3137 1143 264 140 5 chr3 16065716 16066380 -211458198 + L2 LINE L2 2565 3313 0 668 213 45 93 chr3 16066767 16066882 -211457696 + MER113 DNA MER1_type? 13 132 -389 306 0 0 0 chr3 16066882 16066916 -211457662 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1786 123 77 0 chr3 16066916 16067176 -211457402 - AluJb SINE Alu -32 280 1 668 213 45 93 chr3 16067176 16067393 -211457185 + MER113 DNA MER1_type? 130 330 -191 290 250 217 0 chr3 16067679 16067771 -211456807 + MIR3 SINE MIR 89 200 -8 471 345 113 14 chr3 16067791 16068066 -211456512 - L1ME LINE L1 -303 5818 5517 468 265 15 22 chr3 16068601 16068737 -211455841 + L2 LINE L2 3138 3272 0 190 183 49 12 chr3 16069020 16069102 -211455476 + GA-rich Low_complexity Low_complexity 2 86 0 2557 180 5 0 chr3 16069840 16070262 -211454316 + MSTB LTR MaLR 3 426 0 640 253 110 0 chr3 16071278 16071432 -211453146 + MER5B DNA MER1_type 2 172 -6 375 250 30 0 chr3 16072143 16072243 -211452335 + MER5A DNA MER1_type 4 106 -83 334 297 70 14 chr3 16072753 16072933 -211451645 - MIR SINE MIR -6 256 12 426 221 55 19 chr3 16073053 16073181 -211451397 - MIR SINE MIR -62 146 60 982 166 13 0 chr3 16073635 16073792 -211450786 - FRAM SINE Alu -6 160 2 480 229 49 33 chr3 16074235 16074357 -211450221 - L2 LINE L2 -2 3270 3147 314 200 104 43 chr3 16074599 16074714 -211449864 - L1ME2 LINE L1 -2 6162 6041 421 301 68 11 chr3 16074719 16074983 -211449595 + MIR SINE MIR 8 243 -19 269 182 0 18 chr3 16074993 16075048 -211449530 - MER5B DNA MER1_type -6 172 119 266 179 291 0 chr3 16075091 16075209 -211449369 + MIR SINE MIR 23 182 -80 313 345 17 11 chr3 16075572 16075746 -211448832 - MER117 DNA MER1_type -17 180 6 677 306 23 31 chr3 16075924 16076185 -211448393 + MIR SINE MIR 2 260 -2 403 242 105 17 chr3 16077229 16077358 -211447220 + MIR SINE MIR 22 146 -62 426 280 63 21 chr3 16077408 16077597 -211446981 + MER117 DNA MER1_type 1 197 0 192 224 0 0 chr3 16077728 16077795 -211446783 + T-rich Low_complexity Low_complexity 1 67 0 215 224 35 138 chr3 16078066 16078182 -211446396 + MIR3 SINE MIR 58 161 -47 241 198 139 0 chr3 16078608 16078694 -211445884 + MIR SINE MIR 40 137 -71 397 322 82 28 chr3 16078917 16079172 -211445406 + L2 LINE L2 2836 3104 -168 419 271 16 25 chr3 16080468 16080590 -211443988 - Charlie8 DNA MER1_type -2194 223 103 1822 217 73 2 chr3 16081022 16081473 -211443105 - LTR16C LTR ERVL -8 483 1 203 299 31 52 chr3 16081561 16081658 -211442920 + MER5A DNA MER1_type 82 176 -13 285 305 49 0 chr3 16082248 16082330 -211442248 - L2 LINE L2 -16 3256 3171 609 204 32 81 chr3 16082722 16082908 -211441670 - MER5B DNA MER1_type -1 177 1 462 146 173 0 chr3 16082938 16083048 -211441530 - MER103 DNA DNA -36 130 2 1181 262 19 22 chr3 16083314 16083627 -211440951 + MLT1I LTR MaLR 98 409 0 625 215 98 0 chr3 16085100 16085263 -211439315 + L1ME3A LINE L1 5257 5435 -729 * 678 230 86 86 chr3 16085260 16085564 -211439014 + L1ME3A LINE L1 5859 6162 -8 186 252 72 27 chr3 16085943 16086054 -211438524 - MIR SINE MIR -120 142 27 300 321 28 18 chr3 16086678 16086787 -211437791 + MIR3 SINE MIR 83 192 -16 216 277 46 15 chr3 16086987 16087052 -211437526 - MER5B DNA MER1_type -111 67 1 220 274 81 0 chr3 16087095 16087157 -211437421 + MIR SINE MIR 84 150 -112 206 289 0 0 chr3 16088307 16088352 -211436226 - MIR SINE MIR -12 250 206 695 216 226 19 chr3 16088373 16088581 -211435997 + MIR SINE MIR 1 251 -11 586 253 81 75 chr3 16088633 16089043 -211435535 - MLT1J2 LTR MaLR 0 450 2 264 257 57 24 chr3 16089046 16089153 -211435425 - MIR SINE MIR -64 144 34 623 265 100 22 chr3 16089598 16089828 -211434750 - LTR16C LTR ERVL 0 491 244 488 287 91 48 chr3 16090787 16091017 -211433561 + MIR SINE MIR 21 260 -2 2519 43 0 0 chr3 16092356 16092655 -211431923 - AluY SINE Alu -12 299 1 439 226 146 33 chr3 16093396 16093608 -211430970 + MIR SINE MIR 8 243 -19 1710 175 78 27 chr3 16093841 16094212 -211430366 - MLT1B LTR MaLR 0 390 1 208 341 126 35 chr3 16095419 16095958 -211428620 + L2 LINE L2 2149 2736 -578 1219 266 119 7 chr3 16096013 16096475 -211428103 - LTR33 LTR ERVL -7 514 1 271 301 153 68 chr3 16096635 16096871 -211427707 + L2 LINE L2 2997 3252 -20 192 262 0 24 chr3 16096839 16096881 -211427697 + MIR SINE MIR 217 257 -5 * 1276 146 87 80 chr3 16097928 16098216 -211426362 + AluJo SINE Alu 1 290 -22 181 214 0 43 chr3 16099571 16099641 -211424937 + GA-rich Low_complexity Low_complexity 2 68 0 1354 231 77 39 chr3 16100583 16101090 -211423488 + L1ME3 LINE L1 3567 4092 -2054 7922 213 67 41 chr3 16101185 16104205 -211420373 + L1ME1 LINE L1 2750 5845 -321 498 196 68 42 chr3 16104213 16104387 -211420191 + L1MA10 LINE L1 5990 6332 -2 2686 270 62 26 chr3 16104445 16105360 -211419218 + L1ME3 LINE L1 4321 5202 -960 180 0 0 0 chr3 16105360 16105380 -211419198 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2425 34 0 59 chr3 16105386 16105706 -211418872 - AluY SINE Alu -10 301 1 2686 270 62 26 chr3 16105706 16105730 -211418848 + L1ME3 LINE L1 5206 5228 -934 1635 78 0 5 chr3 16105730 16105949 -211418629 + AluY SINE Alu 76 293 -18 2686 270 62 26 chr3 16105949 16106777 -211417801 + L1ME3 LINE L1 5228 6162 0 331 294 18 18 chr3 16106835 16106998 -211417580 - L2 LINE L2 -190 3082 2920 417 264 129 18 chr3 16107009 16107172 -211417406 - MER63A DNA MER1_type 0 210 30 850 213 112 0 chr3 16107386 16107583 -211416995 + MER58A DNA MER1_type 6 224 0 269 211 147 21 chr3 16107850 16107945 -211416633 - LTR16A LTR ERVL 0 450 344 307 291 92 21 chr3 16108051 16108192 -211416386 - LTR16A LTR ERVL -284 166 16 278 270 34 22 chr3 16108402 16108491 -211416087 - MIR SINE MIR -117 145 56 458 296 86 7 chr3 16108675 16108827 -211415751 - MIR SINE MIR -17 245 82 639 270 75 4 chr3 16109243 16109469 -211415109 + MIR SINE MIR 15 256 -6 692 324 36 12 chr3 16109660 16109910 -211414668 + MIR SINE MIR 6 261 -1 236 369 0 45 chr3 16110070 16110181 -211414397 - L2 LINE L2 -65 3207 3102 535 325 0 6 chr3 16110181 16110338 -211414240 - MIR SINE MIR -58 204 49 290 242 16 0 chr3 16110603 16110665 -211413913 - MLT1K LTR MaLR -339 249 187 600 279 130 22 chr3 16110764 16111040 -211413538 + L2 LINE L2 3008 3313 0 5437 190 17 13 chr3 16111044 16112339 -211412239 + L1MA10 LINE L1 4866 6175 -159 5838 132 2 1 chr3 16112339 16113483 -211411095 + L1PA15 LINE L1 5025 6165 0 5437 190 17 13 chr3 16113483 16113644 -211410934 + L1MA10 LINE L1 6175 6334 0 310 344 55 8 chr3 16113852 16113980 -211410598 + L2 LINE L2 3137 3270 -2 743 199 160 0 chr3 16114007 16114163 -211410415 - MER5A DNA MER1_type -6 183 3 274 301 24 0 chr3 16114258 16114341 -211410237 + MIR SINE MIR 35 119 -89 321 68 0 0 chr3 16114368 16114412 -211410166 + (CCCTG)n Simple_repeat Simple_repeat 2 45 0 189 243 29 43 chr3 16114830 16114900 -211409678 - MIR SINE MIR 0 262 194 331 168 103 58 chr3 16114958 16115082 -211409496 - MER113 DNA MER1_type? -289 232 98 3637 163 31 55 chr3 16115082 16115867 -211408711 + L1MB8 LINE L1 5413 6178 0 331 168 103 58 chr3 16115867 16115897 -211408681 - MER113 DNA MER1_type? -423 98 71 8573 133 37 37 chr3 16115906 16116054 -211408524 - Ricksha DNA DNA -7 3239 3092 2228 94 0 3 chr3 16116054 16116361 -211408217 + AluY SINE Alu 1 306 -5 8573 133 37 37 chr3 16116361 16117441 -211407137 - Ricksha DNA DNA -154 3092 2009 2539 7 0 0 chr3 16117441 16117758 -211406820 - AluY SINE Alu 0 317 1 8573 133 37 37 chr3 16117758 16118078 -211406500 - Ricksha DNA DNA -1237 2009 1690 306 186 34 0 chr3 16118072 16118131 -211406447 - ERVL LTR ERVL -61 5703 5643 * 817 170 20 0 chr3 16118116 16118269 -211406309 - Ricksha_a DNA DNA -1025 156 1 21 0 0 0 chr3 16118285 16118306 -211406272 + AT_rich Low_complexity Low_complexity 1 21 0 1826 102 48 31 chr3 16118311 16118605 -211405973 + AluY SINE Alu 1 299 -12 451 289 108 0 chr3 16118655 16118821 -211405757 - MIR SINE MIR -77 185 2 295 227 11 141 chr3 16119078 16119203 -211405375 + MLT1J2 LTR MaLR 1 97 -350 2529 182 124 8 chr3 16119203 16119687 -211404891 + MLT1F LTR MaLR 2 541 -1 295 227 11 141 chr3 16119687 16119746 -211404832 + MLT1J2 LTR MaLR 97 162 -285 3201 142 8 8 chr3 16119794 16120303 -211404275 + L1MB3 LINE L1 5673 6181 -2 351 185 49 12 chr3 16120458 16120539 -211404039 - MLT1J LTR MaLR 0 511 428 512 299 87 29 chr3 16120555 16120796 -211403782 - MLT1J LTR MaLR -52 459 205 588 243 53 34 chr3 16120884 16121090 -211403488 + MLT1J1 LTR MaLR 237 446 0 366 294 106 25 chr3 16121153 16121313 -211403265 + MIR SINE MIR 20 192 -70 847 176 68 50 chr3 16121982 16122018 -211402560 - MER33 DNA MER1_type -2272 313 279 1977 175 48 16 chr3 16122018 16122389 -211402189 - MLT1B LTR MaLR -4 386 4 847 176 68 50 chr3 16122389 16122630 -211401948 - MER33 DNA MER1_type -2306 279 31 370 336 141 37 chr3 16122638 16122873 -211401705 + L2 LINE L2 2890 3170 -102 445 44 0 44 chr3 16122873 16122941 -211401637 - L1PA2 LINE L1 0 6155 6091 370 336 141 37 chr3 16122941 16123032 -211401546 + L2 LINE L2 3170 3250 -22 525 16 0 0 chr3 16123123 16123185 -211401393 + (TG)n Simple_repeat Simple_repeat 1 62 0 257 309 117 0 chr3 16123494 16123588 -211400990 + MER91C DNA MER1_type 36 140 0 716 128 0 28 chr3 16123878 16123987 -211400591 - AluJb SINE Alu -205 107 2 378 228 195 0 chr3 16124173 16124290 -211400288 + MIR SINE MIR 38 175 -68 255 248 205 26 chr3 16124342 16124459 -211400119 - MLT1I LTR MaLR 0 409 272 438 226 184 42 chr3 16125527 16125695 -211398883 - MLT1H LTR MaLR -355 194 3 342 306 122 58 chr3 16126122 16126517 -211398061 + L2 LINE L2 2448 2867 -447 448 270 68 27 chr3 16126700 16126848 -211397730 + MER63A DNA MER1_type 57 210 0 1057 105 0 0 chr3 16126923 16127056 -211397522 + AluSq/x SINE Alu 1 133 -180 799 270 85 0 chr3 16127250 16127461 -211397117 - MIR SINE MIR -32 230 2 226 382 15 23 chr3 16127873 16128004 -211396574 - MIR SINE MIR -63 145 16 2576 61 0 0 chr3 16128189 16128484 -211396094 - AluY SINE Alu -16 295 1 994 179 0 71 chr3 16128786 16129010 -211395568 - AluJo SINE Alu -13 299 92 2393 110 0 0 chr3 16129083 16129392 -211395186 + AluSx SINE Alu 1 309 -3 319 309 62 62 chr3 16129393 16129603 -211394975 - MIR SINE MIR -38 224 15 345 335 44 46 chr3 16129622 16130055 -211394523 - L2 LINE L2 -1172 2142 1711 222 224 0 20 chr3 16130287 16130336 -211394242 + CT-rich Low_complexity Low_complexity 4 51 0 318 308 0 33 chr3 16130340 16130431 -211394147 - L2 LINE L2 -13 3259 3172 394 297 43 49 chr3 16130503 16130688 -211393890 - MIR SINE MIR 0 262 79 394 263 178 13 chr3 16130826 16130978 -211393600 + MER5A DNA MER1_type 7 183 -6 26 30 0 0 chr3 16131489 16131522 -211393056 + GC_rich Low_complexity Low_complexity 1 33 0 344 264 157 14 chr3 16132052 16132192 -211392386 - MIR SINE MIR -12 250 91 25 0 0 0 chr3 16133203 16133228 -211391350 + AT_rich Low_complexity Low_complexity 1 25 0 245 251 28 70 chr3 16134315 16134434 -211390144 - MIR SINE MIR -56 206 95 595 314 44 20 chr3 16135444 16135696 -211388882 + MER102a DNA MER1_type 63 320 -10 441 331 7 0 chr3 16135849 16135994 -211388584 - MER117 DNA MER1_type -47 150 5 23 0 0 0 chr3 16136802 16136825 -211387753 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 16136892 16136914 -211387664 + AT_rich Low_complexity Low_complexity 1 22 0 203 313 30 10 chr3 16137358 16137457 -211387121 - L2 LINE L2 -24 3248 3148 204 311 19 47 chr3 16137615 16137721 -211386857 + MIR3 SINE MIR 100 202 -6 205 282 65 73 chr3 16137922 16138046 -211386532 - MIR SINE MIR -55 207 85 451 283 186 20 chr3 16138866 16139113 -211385465 + L3 LINE CR1 1204 1491 -86 516 291 102 0 chr3 16139213 16139340 -211385238 - MER91C DNA MER1_type 0 140 1 263 371 41 0 chr3 16139357 16139454 -211385124 + L3 LINE CR1 1462 1562 -15 672 275 121 46 chr3 16139677 16140033 -211384545 - L1ME3A LINE L1 -223 5947 5619 2322 95 14 3 chr3 16140033 16140329 -211384249 + AluSx SINE Alu 1 299 -13 672 275 121 46 chr3 16140329 16140620 -211383958 - L1ME3A LINE L1 -551 5619 5258 1291 247 119 43 chr3 16140621 16141318 -211383260 - L1ME3A LINE L1 -920 5226 4477 235 207 329 0 chr3 16141325 16141407 -211383171 + MER5A DNA MER1_type 2 110 -79 247 224 30 0 chr3 16142329 16142396 -211382182 - MER103 DNA DNA -95 71 3 204 326 92 31 chr3 16142528 16142626 -211381952 - L3 LINE CR1 -260 1317 1214 223 341 40 40 chr3 16143398 16143524 -211381054 - L2 LINE L2 -5 3308 3183 1001 259 101 36 chr3 16143644 16144091 -211380487 + L2 LINE L2 2828 3303 -10 207 114 0 0 chr3 16144091 16144126 -211380452 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 238 270 20 90 chr3 16144127 16144227 -211380351 + MIR SINE MIR 100 192 -70 274 231 0 99 chr3 16144301 16144392 -211380186 + MIR SINE MIR 120 201 -61 371 288 130 33 chr3 16144734 16144918 -211379660 + MIR SINE MIR 61 262 0 352 331 97 23 chr3 16145252 16145427 -211379151 - L2 LINE L2 -166 3106 2919 877 284 174 3 chr3 16145527 16145918 -211378660 - L2 LINE L2 0 3313 2856 453 314 222 33 chr3 16146351 16146873 -211377705 + L1MC4a LINE L1 5574 6194 -1614 219 250 0 0 chr3 16147151 16147211 -211377367 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2371 111 0 0 chr3 16148195 16148493 -211376085 - AluSq SINE Alu -15 298 1 396 276 73 16 chr3 16148743 16148866 -211375712 + MIR SINE MIR 21 150 -112 275 296 46 83 chr3 16149121 16149337 -211375241 - MIR SINE MIR -15 247 40 218 261 153 36 chr3 16149838 16149949 -211374629 + MIR SINE MIR 38 161 -101 363 238 67 28 chr3 16150741 16150872 -211373706 + MIR3 SINE MIR 5 143 -77 3479 179 68 3 chr3 16150998 16151720 -211372858 - L1MB7 LINE L1 0 6184 5416 401 273 30 8 chr3 16151737 16151869 -211372709 + MER103 DNA DNA 14 148 -18 1030 224 47 0 chr3 16151940 16152154 -211372424 + MER58A DNA MER1_type 1 224 0 322 302 57 0 chr3 16152636 16152742 -211371836 + MIR SINE MIR 92 203 -59 211 241 74 0 chr3 16152799 16152853 -211371725 + L2 LINE L2 3147 3204 -68 351 272 87 3 chr3 16153564 16153597 -211370981 + MIR SINE MIR 40 69 -185 2082 139 0 3 chr3 16153597 16153884 -211370694 + AluSx SINE Alu 1 286 -26 351 272 87 3 chr3 16153884 16153993 -211370585 + MIR SINE MIR 69 191 -63 204 292 15 15 chr3 16155630 16155695 -211368883 + L2 LINE L2 3245 3309 -4 755 292 5 0 chr3 16155843 16156035 -211368543 + MIR SINE MIR 16 208 -54 543 209 27 0 chr3 16156041 16156151 -211368427 - MIR SINE MIR -98 164 52 240 235 0 0 chr3 16156223 16156274 -211368304 + L2 LINE L2 3263 3313 0 291 140 0 0 chr3 16156931 16156981 -211367597 + (TG)n Simple_repeat Simple_repeat 1 50 0 325 344 13 33 chr3 16157427 16157578 -211367000 - MER5A DNA MER1_type -2 187 40 306 309 43 11 chr3 16157779 16157873 -211366705 + L2 LINE L2 3168 3264 -8 373 270 116 37 chr3 16158463 16158678 -211365900 + L2 LINE L2 2827 3058 -214 550 263 127 51 chr3 16158678 16158994 -211365584 - MLT1I LTR MaLR 0 409 70 216 308 106 71 chr3 16159584 16159782 -211364796 + MIR SINE MIR 17 221 -41 271 251 68 13 chr3 16159997 16160128 -211364450 - MLT1J LTR MaLR -233 213 70 599 198 88 44 chr3 16160262 16160444 -211364134 + Charlie8 DNA MER1_type 76 265 -2152 651 254 25 51 chr3 16161058 16161295 -211363283 + MIR SINE MIR 33 260 -2 594 285 20 0 chr3 16162186 16162337 -211362241 - MIR SINE MIR -52 210 57 211 147 0 0 chr3 16162461 16162495 -211362083 + L2 LINE L2 3269 3302 -11 624 299 6 18 chr3 16162632 16162796 -211361782 - MIR3 SINE MIR -19 189 28 216 333 15 0 chr3 16163674 16163740 -211360838 + L2 LINE L2 3206 3272 0 392 335 102 0 chr3 16163935 16164111 -211360467 - MIR3 SINE MIR 0 208 15 288 53 0 0 chr3 16164927 16164965 -211359613 + (A)n Simple_repeat Simple_repeat 1 38 0 910 279 0 14 chr3 16165021 16165243 -211359335 + MER58A DNA MER1_type 1 219 -5 21 0 0 0 chr3 16165251 16165272 -211359306 + AT_rich Low_complexity Low_complexity 1 21 0 310 252 189 42 chr3 16165490 16165633 -211358945 - L2 LINE L2 0 3313 3150 264 319 150 13 chr3 16165781 16166007 -211358571 - L2 LINE L2 -430 2884 2628 442 191 106 0 chr3 16166739 16166833 -211357745 - MIR SINE MIR -36 226 123 349 209 132 78 chr3 16168066 16168195 -211356383 + MIR3 SINE MIR 2 137 -71 892 260 78 9 chr3 16168649 16168995 -211355583 - MLT2C1 LTR ERVL -27 370 1 2346 87 0 3 chr3 16169252 16169540 -211355038 + AluSq SINE Alu 15 301 -12 265 260 81 94 chr3 16169657 16169880 -211354698 + L1MC4a LINE L1 5700 5919 -1889 235 0 0 0 chr3 16170114 16170140 -211354438 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1725 148 42 0 chr3 16170140 16170404 -211354174 - AluSx SINE Alu -26 286 12 1449 185 43 26 chr3 16170419 16170722 -211353856 - AluJo SINE Alu -4 308 1 189 175 0 0 chr3 16170826 16170866 -211353712 + G-rich Low_complexity Low_complexity 4 43 0 1699 248 42 10 chr3 16171693 16172101 -211352477 + LTR16C LTR ERVL 64 484 -7 388 275 56 14 chr3 16172413 16172555 -211352023 + MIR SINE MIR 81 228 -34 1042 281 121 23 chr3 16172563 16172993 -211351585 + MLT1K LTR MaLR 104 575 -13 269 246 0 15 chr3 16173339 16173404 -211351174 - LTR16C LTR ERVL -136 355 292 272 184 123 105 chr3 16173525 16173639 -211350939 - MIR SINE MIR -72 136 21 1531 239 47 32 chr3 16173685 16174178 -211350400 + MER113 DNA MER1_type? 22 521 0 448 247 161 25 chr3 16174186 16174348 -211350230 - MER5A DNA MER1_type 0 189 6 907 233 51 19 chr3 16174357 16174572 -211350006 + MER58A DNA MER1_type 1 222 -2 261 164 36 0 chr3 16175049 16175104 -211349474 + L1ME3 LINE L1 5589 5645 -517 1677 257 63 20 chr3 16175191 16175681 -211348897 + L1ME3 LINE L1 5652 6162 0 183 222 42 56 chr3 16176056 16176128 -211348450 - MIR SINE MIR -135 127 57 324 188 0 0 chr3 16176134 16176203 -211348375 + CT-rich Low_complexity Low_complexity 3 71 0 738 193 0 15 chr3 16176217 16176352 -211348226 - FLAM_C SINE Alu 0 133 1 820 205 140 9 chr3 16176477 16176706 -211347872 + MIR SINE MIR 1 259 -3 199 308 42 50 chr3 16176797 16176917 -211347661 - MIR SINE MIR -107 155 37 * 360 261 118 25 chr3 16176856 16176951 -211347627 + MIR SINE MIR 13 98 -160 724 113 0 0 chr3 16176951 16177057 -211347521 - L1PA5 LINE L1 -3 6151 6046 360 261 118 25 chr3 16177057 16177136 -211347442 + MIR SINE MIR 98 197 -61 2102 119 0 0 chr3 16177687 16177981 -211346597 + AluSx SINE Alu 1 294 -18 475 259 98 52 chr3 16177998 16178191 -211346387 - L2 LINE L2 -218 3054 2853 214 365 21 10 chr3 16178389 16178485 -211346093 - L2 LINE L2 -216 3056 2960 486 259 177 0 chr3 16178501 16178648 -211345930 - MIR SINE MIR -3 259 87 303 259 33 50 chr3 16179347 16179495 -211345083 + MIR SINE MIR 1 140 -68 468 285 89 6 chr3 16179526 16179684 -211344894 + MIR3 SINE MIR 38 208 0 207 261 29 72 chr3 16179730 16179799 -211344779 - L2 LINE L2 0 3272 3207 * 253 314 91 45 chr3 16179794 16180036 -211344542 + L2 LINE L2 2585 2837 -477 298 152 0 0 chr3 16180071 16180117 -211344461 + L2 LINE L2 3267 3312 -1 1326 204 93 18 chr3 16180150 16180538 -211344040 + MER113 DNA MER1_type? 9 425 -96 871 251 173 15 chr3 16181194 16181605 -211342973 - MLT1K LTR MaLR 0 476 1 825 275 26 70 chr3 16181731 16182044 -211342534 + L2 LINE L2 2962 3260 -12 1663 240 29 44 chr3 16183222 16183988 -211340590 - L1M4c LINE L1 -4586 2373 1281 2447 71 0 0 chr3 16183988 16184299 -211340279 - AluY SINE Alu 0 311 1 1663 240 29 44 chr3 16184299 16184351 -211340227 - L1M4c LINE L1 -5678 1281 1230 1552 279 23 17 chr3 16184422 16184903 -211339675 - L1M4c LINE L1 -5771 1088 605 408 345 47 29 chr3 16184966 16185241 -211339337 - L1M4c LINE L1 -6283 576 297 4820 82 18 86 chr3 16185387 16186405 -211338173 - L1P LINE L1 -829 5317 4369 * 8267 43 0 1 chr3 16186404 16187401 -211337177 - L1P LINE L1 -1163 4983 3988 2059 113 7 0 chr3 16188349 16188642 -211335936 + AluSx SINE Alu 5 299 -13 2161 115 0 0 chr3 16188941 16189245 -211335333 + AluSx SINE Alu 1 304 -8 436 298 115 34 chr3 16189249 16189484 -211335094 + MIR SINE MIR 9 262 0 1013 206 123 83 chr3 16189990 16190340 -211334238 - MLT1A1 LTR MaLR -1 364 1 30 27 0 0 chr3 16192162 16192199 -211332379 + AT_rich Low_complexity Low_complexity 1 37 0 2998 134 0 7 chr3 16192286 16192726 -211331852 - LTR9B LTR ERV1 0 644 208 556 261 60 10 chr3 16192926 16193125 -211331453 + L1ME LINE L1 5313 5521 -645 * 30857 46 2 3 chr3 16193094 16197469 -211327109 + L1PA3 LINE L1 1524 5892 -263 845 255 60 12 chr3 16198677 16199096 -211325482 - L1MEc LINE L1 -2869 3346 2908 1683 179 188 8 chr3 16199352 16199709 -211324869 + MSTC LTR MaLR 8 428 0 743 278 163 18 chr3 16199713 16199763 -211324815 + MLT1E1 LTR MaLR 89 130 -463 3152 86 32 5 chr3 16199763 16199800 -211324778 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 16199800 16199837 -211324741 + (CA)n Simple_repeat Simple_repeat 2 38 0 3152 86 32 5 chr3 16199837 16200231 -211324347 - MLT2A1 LTR ERVL -34 410 1 743 278 163 18 chr3 16200231 16200457 -211324121 + MLT1E1 LTR MaLR 130 405 -188 795 257 6 6 chr3 16200581 16200760 -211323818 + MLT1E1 LTR MaLR 476 654 0 361 280 36 44 chr3 16200778 16201028 -211323550 - L1MEc LINE L1 -3744 2471 2224 412 311 154 26 chr3 16201061 16201334 -211323244 - L1MEc LINE L1 -4214 2182 1875 2260 92 0 3 chr3 16201629 16201935 -211322643 - AluY SINE Alu -6 305 1 254 231 31 0 chr3 16202083 16202148 -211322430 - L1MEc LINE L1 -5016 1380 1314 2113 102 3 0 chr3 16202314 16202655 -211321923 + AluSq SINE Alu 2 313 0 3254 116 53 2 chr3 16202822 16203312 -211321266 + L1PB4 LINE L1 5536 6050 -106 2203 86 3 3 chr3 16203313 16203605 -211320973 + AluSg SINE Alu 2 293 -17 494 305 102 5 chr3 16205271 16205458 -211319120 - MIR SINE MIR -21 241 37 2004 132 51 25 chr3 16205799 16206154 -211318424 - THE1B LTR MaLR 0 364 1 367 188 75 25 chr3 16206986 16207066 -211317512 + MER117 DNA MER1_type 112 195 -2 239 286 36 57 chr3 16207081 16207221 -211317357 - MIR3 SINE MIR -61 147 11 504 227 71 32 chr3 16207298 16207452 -211317126 - L2 LINE L2 -13 3300 3141 444 249 69 52 chr3 16207843 16208016 -211316562 + MER20B DNA MER1_type 1 176 -607 330 80 0 0 chr3 16209021 16209071 -211315507 + (TG)n Simple_repeat Simple_repeat 1 50 0 488 319 14 7 chr3 16209524 16209662 -211314916 - MIR3 SINE MIR -62 146 8 460 269 81 50 chr3 16209843 16210003 -211314575 + MIR SINE MIR 92 256 -6 427 313 0 21 chr3 16210433 16210577 -211314001 + L2 LINE L2 3160 3300 -13 290 231 209 22 chr3 16211760 16211894 -211312684 + MIR SINE MIR 34 192 -70 680 236 93 0 chr3 16212940 16213101 -211311477 - MIR SINE MIR -66 196 21 216 204 0 0 chr3 16213116 16213160 -211311418 + L2 LINE L2 3208 3251 -21 305 312 75 27 chr3 16213754 16213940 -211310638 - MIR SINE MIR -35 227 33 448 285 23 41 chr3 16214692 16214864 -211309714 + MIR3 SINE MIR 9 177 -31 498 271 7 21 chr3 16215360 16215500 -211309078 - MIR SINE MIR -124 138 1 265 86 0 0 chr3 16215685 16215720 -211308858 + MIR SINE MIR 117 151 -111 219 171 24 0 chr3 16216877 16216918 -211307660 - MIR SINE MIR -78 130 89 532 288 86 58 chr3 16217219 16217462 -211307116 - MIR SINE MIR 0 262 13 750 167 16 0 chr3 16217596 16217722 -211306856 - AluJb SINE Alu -84 228 101 573 281 65 23 chr3 16217906 16218123 -211306455 - MIR SINE MIR -17 245 20 2317 169 141 13 chr3 16218136 16218597 -211305981 - MLT2B1 LTR ERVL 0 520 1 455 265 163 33 chr3 16219668 16219883 -211304695 - MIR SINE MIR -13 249 7 456 284 58 26 chr3 16220282 16220437 -211304141 + MIR SINE MIR 59 218 -44 393 285 91 0 chr3 16220502 16220648 -211303930 + MIR SINE MIR 36 192 -65 542 243 11 37 chr3 16220928 16221117 -211303461 + L1ME4a LINE L1 5934 6117 -4 296 229 9 64 chr3 16221487 16221596 -211302982 - MIR SINE MIR -44 218 116 * 297 329 41 24 chr3 16221588 16221758 -211302820 + L2 LINE L2 2266 2438 -876 1056 266 154 7 chr3 16221793 16222468 -211302110 - L2 LINE L2 -95 3218 2441 188 314 94 19 chr3 16222491 16222650 -211301928 + L2 LINE L2 2481 2651 -663 456 269 0 22 chr3 16222968 16223102 -211301476 + MIR SINE MIR 23 153 -109 337 242 131 0 chr3 16223220 16223319 -211301259 + MIR SINE MIR 34 145 -117 183 278 0 19 chr3 16223822 16223876 -211300702 + MIR SINE MIR 90 142 -66 6388 109 45 16 chr3 16224505 16225546 -211299032 + MER11C LTR ERVK 1 1071 0 680 262 89 13 chr3 16225616 16225841 -211298737 + MIR SINE MIR 3 244 -18 356 243 117 9 chr3 16227190 16227301 -211297277 + L2 LINE L2 3191 3313 0 583 282 119 36 chr3 16227500 16227911 -211296667 - L1ME LINE L1 -303 5818 5374 217 363 8 32 chr3 16228038 16228162 -211296416 + MIR SINE MIR 19 139 -69 284 333 12 0 chr3 16228239 16228320 -211296258 + L2 LINE L2 3187 3268 -4 721 259 60 5 chr3 16228427 16228628 -211295950 - MIR SINE MIR -1 261 50 648 286 24 14 chr3 16229194 16229404 -211295174 - MIR SINE MIR -45 217 6 226 306 71 20 chr3 16229415 16229513 -211295065 + L2 LINE L2 3161 3263 -9 495 297 0 7 chr3 16229581 16229729 -211294849 - MIR SINE MIR -25 237 91 417 306 96 9 chr3 16230184 16230403 -211294175 + L2 LINE L2 2569 2806 -508 246 224 60 15 chr3 16230639 16230706 -211293872 + L2 LINE L2 3200 3269 -3 807 236 96 16 chr3 16231184 16231434 -211293144 + LTR33 LTR ERVL 1 270 -251 292 198 74 33 chr3 16231481 16231531 -211293047 + LTR33 LTR ERVL 394 440 -81 2047 158 18 0 chr3 16231531 16231872 -211292706 - MER7A DNA MER2_type -1 345 1 292 198 74 33 chr3 16231872 16231942 -211292636 + LTR33 LTR ERVL 440 519 -2 459 255 114 0 chr3 16232203 16232334 -211292244 - MIR SINE MIR -80 182 38 415 215 32 0 chr3 16232435 16232528 -211292050 - MIR SINE MIR -10 252 157 330 222 56 0 chr3 16232549 16232639 -211291939 - L1MB2 LINE L1 -1 6170 6076 266 229 0 0 chr3 16232672 16232720 -211291858 - Tigger3(Golem) DNA MER2_type 0 3029 2982 2860 139 18 2 chr3 16232724 16233213 -211291365 - L1MB2 LINE L1 -89 6082 5586 615 248 0 0 chr3 16233213 16233346 -211291232 - MIR SINE MIR -96 166 34 191 298 191 0 chr3 16233346 16233440 -211291138 + MIR SINE MIR 134 245 -17 249 250 58 37 chr3 16233814 16233917 -211290661 - MIR SINE MIR -76 132 39 2165 118 21 0 chr3 16235698 16235987 -211288591 - AluSx SINE Alu -17 295 1 229 233 12 12 chr3 16236150 16236236 -211288342 + (TCCA)n Simple_repeat Simple_repeat 4 89 0 228 163 0 0 chr3 16236354 16236397 -211288181 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 719 191 6 0 chr3 16236417 16236579 -211287999 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 198 143 0 0 chr3 16236609 16236644 -211287934 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 387 232 13 7 chr3 16236679 16236830 -211287748 + (TCCA)n Simple_repeat Simple_repeat 1 152 0 348 302 66 130 chr3 16236856 16237309 -211287269 - L2 LINE L2 0 3272 2849 233 294 19 31 chr3 16237532 16237692 -211286886 - L1M4 LINE L1 -433 5741 5584 384 325 8 0 chr3 16237697 16237823 -211286755 - MIR SINE MIR -102 160 34 216 287 191 0 chr3 16237823 16237917 -211286661 + MIR SINE MIR 134 245 -17 249 250 58 37 chr3 16238291 16238394 -211286184 - MIR SINE MIR -76 132 39 1007 253 83 46 chr3 16240322 16240817 -211283761 + L2 LINE L2 2488 2999 -314 261 0 0 0 chr3 16240830 16240859 -211283719 + (T)n Simple_repeat Simple_repeat 1 29 0 604 315 47 67 chr3 16241279 16241622 -211282956 + L2 LINE L2 2933 3268 -4 245 150 0 0 chr3 16241722 16241762 -211282816 + L2 LINE L2 3230 3269 -3 658 257 124 0 chr3 16242801 16243003 -211281575 - MIR SINE MIR 0 262 36 23 33 0 0 chr3 16244289 16244319 -211280259 + AT_rich Low_complexity Low_complexity 1 30 0 212 276 43 141 chr3 16245079 16245242 -211279336 - MIR SINE MIR -112 150 4 378 263 88 39 chr3 16245428 16245532 -211279046 - MIR SINE MIR -62 146 69 2248 55 42 28 chr3 16245532 16245821 -211278757 + AluY SINE Alu 1 293 -18 378 263 88 39 chr3 16245821 16245890 -211278688 - MIR SINE MIR -139 69 5 249 250 58 37 chr3 16247602 16247705 -211276873 + MIR SINE MIR 39 132 -76 216 287 191 0 chr3 16248079 16248173 -211276405 - MIR SINE MIR -17 245 134 590 256 0 0 chr3 16248173 16248306 -211276272 + MIR SINE MIR 34 166 -96 2798 140 25 2 chr3 16248306 16248792 -211275786 + L1MB2 LINE L1 5586 6082 -89 266 229 0 0 chr3 16248796 16248844 -211275734 + Tigger3(Golem) DNA MER2_type 2981 3028 -1 355 211 56 0 chr3 16248877 16248967 -211275611 + L1MB2 LINE L1 6076 6170 -1 415 215 32 0 chr3 16248988 16249081 -211275497 + MIR SINE MIR 157 252 -10 449 263 114 0 chr3 16249182 16249313 -211275265 + MIR SINE MIR 38 182 -80 292 198 74 33 chr3 16249574 16249644 -211274934 - LTR33 LTR ERVL -2 519 440 2047 158 18 0 chr3 16249644 16249985 -211274593 + MER7A DNA MER2_type 1 345 -1 292 198 74 33 chr3 16249985 16250035 -211274543 - LTR33 LTR ERVL -81 440 394 830 232 96 16 chr3 16250082 16250332 -211274246 - LTR33 LTR ERVL -251 270 1 246 224 60 15 chr3 16250810 16250877 -211273701 - L2 LINE L2 -3 3310 3241 417 306 96 9 chr3 16251113 16251332 -211273246 - L2 LINE L2 -508 2806 2569 495 297 0 7 chr3 16251787 16251935 -211272643 + MIR SINE MIR 91 237 -25 226 306 71 20 chr3 16252003 16252101 -211272477 - L2 LINE L2 -9 3263 3161 648 286 24 14 chr3 16252112 16252322 -211272256 + MIR SINE MIR 6 217 -45 721 259 60 5 chr3 16252888 16253089 -211271489 + MIR SINE MIR 50 261 -1 284 333 12 0 chr3 16253196 16253277 -211271301 - L2 LINE L2 -4 3268 3187 217 363 8 32 chr3 16253354 16253478 -211271100 - MIR SINE MIR -69 139 19 583 282 119 36 chr3 16253605 16254016 -211270562 + L1ME LINE L1 5374 5818 -303 356 243 117 9 chr3 16254215 16254326 -211270252 - L2 LINE L2 0 3313 3191 680 262 89 13 chr3 16255675 16255900 -211268678 - MIR SINE MIR -18 244 3 6492 108 45 17 chr3 16255970 16257012 -211267566 - MER11C LTR ERVK 0 1071 1 327 318 70 16 chr3 16257499 16257757 -211266821 + L2 LINE L2 2376 2647 -667 215 322 35 49 chr3 16257733 16257876 -211266702 + MIR SINE MIR 69 209 -53 * 456 305 32 7 chr3 16258182 16258336 -211266242 - MIR3 SINE MIR -14 194 37 387 304 149 10 chr3 16258679 16258873 -211265705 - L2 LINE L2 -49 3223 3003 2250 91 0 77 chr3 16258881 16259220 -211265358 + AluSq SINE Alu 1 313 0 820 298 147 47 chr3 16259499 16259965 -211264613 - L2 LINE L2 0 3313 2784 411 68 0 0 chr3 16259965 16260024 -211264554 + (GGATG)n Simple_repeat Simple_repeat 2 60 0 820 298 147 47 chr3 16260024 16260135 -211264443 - L2 LINE L2 -529 2784 2686 210 71 0 0 chr3 16260517 16260545 -211264033 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 3483 118 43 42 chr3 16261019 16261147 -211263431 - L1PB4 LINE L1 0 6156 6030 2164 124 10 3 chr3 16261147 16261453 -211263125 - AluSc SINE Alu 0 309 2 3483 118 43 42 chr3 16261453 16261944 -211262634 - L1PB4 LINE L1 -126 6030 5536 2409 88 0 0 chr3 16262111 16262449 -211262129 - AluSq SINE Alu 0 313 2 499 215 0 9 chr3 16262702 16262809 -211261769 - MIR SINE MIR -112 150 45 301 246 160 46 chr3 16263090 16263265 -211261313 - MIR SINE MIR -27 235 41 254 305 195 0 chr3 16263379 16263497 -211261081 + MER91A DNA MER1_type 20 160 -36 274 227 45 0 chr3 16263530 16263596 -211260982 + MER91A DNA MER1_type 128 196 0 183 80 0 0 chr3 16263704 16263729 -211260849 + (TCCCC)n Simple_repeat Simple_repeat 3 27 0 444 266 43 103 chr3 16263958 16264459 -211260119 - L2 LINE L2 -85 3187 2725 1150 267 71 37 chr3 16265206 16265971 -211258607 - L2 LINE L2 -1 3312 2510 318 287 28 0 chr3 16268774 16268882 -211255696 - L1MC4 LINE L1 -4 8038 7928 387 259 45 0 chr3 16268893 16269005 -211255573 - MLT2E LTR ERVL -2 626 510 824 254 88 62 chr3 16269008 16269243 -211255335 + L2 LINE L2 2950 3198 -115 2343 103 3 0 chr3 16269243 16269554 -211255024 + AluSx SINE Alu 1 312 0 824 254 88 62 chr3 16269554 16269672 -211254906 + L2 LINE L2 3198 3312 -1 225 159 0 0 chr3 16269679 16269723 -211254855 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 546 256 174 19 chr3 16269754 16269961 -211254617 + MIR SINE MIR 24 262 0 695 312 48 21 chr3 16270495 16270842 -211253736 - L1ME LINE L1 -442 5679 5318 1786 178 0 14 chr3 16270842 16271135 -211253443 - AluJo SINE Alu -23 289 1 695 312 48 21 chr3 16271135 16271201 -211253377 - L1ME LINE L1 -803 5318 5255 301 240 42 42 chr3 16271213 16271309 -211253269 + L1MCa LINE L1 1969 2064 -4362 * 310 318 47 0 chr3 16271259 16271344 -211253234 - L1MC4 LINE L1 -1340 6702 6614 414 0 50 0 chr3 16271349 16271436 -211253142 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 323 263 71 0 chr3 16271582 16271681 -211252897 + MIR SINE MIR 138 243 -19 1544 194 3 24 chr3 16272168 16272486 -211252092 + AluJo SINE Alu 1 312 0 505 254 102 83 chr3 16272776 16272856 -211251722 - LTR16B LTR ERVL -1 463 386 1058 137 0 0 chr3 16272856 16273024 -211251554 - L1MA4 LINE L1 -5 6295 6128 505 254 102 83 chr3 16273024 16273364 -211251214 - LTR16B LTR ERVL -78 386 35 391 287 77 41 chr3 16273408 16273507 -211251071 - MIR SINE MIR -13 249 155 2361 144 95 0 chr3 16273507 16273896 -211250682 + MSTB LTR MaLR 1 426 0 391 287 77 41 chr3 16273896 16273991 -211250587 - MIR SINE MIR -107 155 48 857 245 89 57 chr3 16274147 16274628 -211249950 - LTR8A LTR ERV1 0 727 108 337 236 85 47 chr3 16274772 16274878 -211249700 - LTR8 LTR ERV1 -581 110 1 318 281 43 58 chr3 16275069 16275208 -211249370 + MER5A DNA MER1_type 29 165 -24 1858 159 45 109 chr3 16275260 16275642 -211248936 + L1MC4 LINE L1 7513 7918 -124 2359 107 0 0 chr3 16275642 16275941 -211248637 + AluSx SINE Alu 1 299 -13 1858 159 45 109 chr3 16275941 16276079 -211248499 + L1MC4 LINE L1 7918 7998 -44 2046 145 0 0 chr3 16276079 16276387 -211248191 - AluSx SINE Alu 0 308 1 1858 159 45 109 chr3 16276387 16276423 -211248155 + L1MC4 LINE L1 7998 8035 -7 304 261 252 37 chr3 16276580 16276798 -211247780 + L2 LINE L2 2971 3235 -37 342 335 50 6 chr3 16277527 16277709 -211246869 + L2 LINE L2 2655 2844 -470 613 191 13 40 chr3 16277752 16277904 -211246674 - L1M4 LINE L1 -1488 4658 4511 508 264 61 112 chr3 16277986 16278497 -211246081 + MER34 LTR ERV1 1 485 -57 214 164 164 36 chr3 16278686 16278741 -211245837 + L2 LINE L2 3168 3229 -43 385 279 39 10 chr3 16278973 16279075 -211245503 + MER5B DNA MER1_type 64 168 -10 427 250 62 94 chr3 16279075 16279267 -211245311 - MER5A DNA MER1_type -1 188 3 232 282 0 0 chr3 16279404 16279470 -211245108 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16279488 16279555 -211245023 - L2 LINE L2 -3 3269 3207 341 277 66 69 chr3 16279922 16280225 -211244353 + MLT1L LTR MaLR 1 302 -313 290 136 236 9 chr3 16280429 16280501 -211244077 + L1ME3A LINE L1 5585 5671 -507 2133 132 7 0 chr3 16280533 16280828 -211243750 - AluJo SINE Alu -15 297 1 1418 243 87 15 chr3 16280828 16281309 -211243269 + L1ME3A LINE L1 5655 6170 0 230 303 0 0 chr3 16281488 16281554 -211243024 - MIR SINE MIR -87 175 110 331 297 35 47 chr3 16281726 16281982 -211242596 + L2 LINE L2 2810 3062 -210 295 311 0 50 chr3 16282053 16282172 -211242406 - MIR SINE MIR -70 192 80 595 242 55 24 chr3 16282239 16282404 -211242174 - MIR SINE MIR 0 262 93 480 301 45 63 chr3 16282479 16282639 -211241939 + L1ME4a LINE L1 5446 5607 -514 2327 92 7 3 chr3 16282639 16282943 -211241635 - AluSx SINE Alu -7 305 1 480 301 45 63 chr3 16282943 16283273 -211241305 + L1ME4a LINE L1 5607 5927 -194 333 281 21 21 chr3 16283343 16283439 -211241139 - MIR SINE MIR -81 181 86 304 233 29 39 chr3 16283481 16283584 -211240994 + L1ME4a LINE L1 6011 6112 -9 925 272 16 12 chr3 16284747 16284990 -211239588 + MIR SINE MIR 19 262 0 720 234 35 53 chr3 16284976 16285203 -211239375 - MIR SINE MIR -34 228 6 * 362 248 97 35 chr3 16285298 16285443 -211239135 + MIR SINE MIR 7 160 -102 425 300 74 97 chr3 16285851 16286518 -211238060 + L2 LINE L2 2637 3272 0 282 217 0 0 chr3 16286538 16286607 -211237971 + (TGGG)n Simple_repeat Simple_repeat 2 70 0 333 201 11 63 chr3 16286654 16286828 -211237750 + (GAATG)n Simple_repeat Simple_repeat 2 166 0 541 264 17 0 chr3 16289062 16289228 -211235350 - MIR SINE MIR -50 158 20 238 209 0 0 chr3 16289238 16289281 -211235297 + MIR SINE MIR 111 153 -55 622 264 108 35 chr3 16290380 16290608 -211233970 - MIR SINE MIR 0 262 17 342 366 16 21 chr3 16290685 16290871 -211233707 - MIR SINE MIR -40 222 38 239 167 62 0 chr3 16291937 16291985 -211232593 - MIR SINE MIR -103 159 109 233 230 17 35 chr3 16292762 16292849 -211231729 - MIR SINE MIR -58 150 76 22 0 0 0 chr3 16293151 16293173 -211231405 + AT_rich Low_complexity Low_complexity 1 22 0 383 291 9 9 chr3 16293385 16293495 -211231083 - MIR SINE MIR -130 132 23 193 256 151 58 chr3 16294149 16294235 -211230343 - L2 LINE L2 -25 3288 3195 356 285 41 16 chr3 16294473 16294596 -211229982 + MIR SINE MIR 27 152 -110 327 315 174 13 chr3 16294864 16295013 -211229565 - MIR3 SINE MIR -26 182 10 305 294 56 40 chr3 16295275 16295401 -211229177 - MIR SINE MIR -78 184 57 750 235 71 6 chr3 16295563 16295733 -211228845 + MIR SINE MIR 1 181 -81 2437 85 0 3 chr3 16296800 16297106 -211227472 + AluY SINE Alu 1 305 -6 508 303 164 0 chr3 16297186 16297381 -211227197 - MIR SINE MIR -1 261 35 1064 182 0 0 chr3 16297566 16297731 -211226847 + AluJb SINE Alu 134 298 -14 233 280 2 0 chr3 16298219 16298292 -211226286 - Charlie8 DNA MER1_type -989 1428 1368 195 261 116 0 chr3 16298470 16298539 -211226039 + MIR3 SINE MIR 83 159 -49 249 289 23 16 chr3 16299396 16299614 -211224964 + CT-rich Low_complexity Low_complexity 2 312 0 650 235 173 0 chr3 16299877 16300056 -211224522 - MER63A DNA MER1_type 0 210 1 386 295 34 13 chr3 16301317 16301466 -211223112 - MIR3 SINE MIR -21 187 36 614 243 7 7 chr3 16301891 16302031 -211222547 + MIR SINE MIR 6 145 -117 404 233 207 33 chr3 16302567 16302717 -211221861 + MIR3 SINE MIR 10 185 -23 2539 51 0 3 chr3 16302814 16303108 -211221470 - AluY SINE Alu -18 293 1 329 254 116 43 chr3 16303287 16303425 -211221153 + MIR3 SINE MIR 14 161 -47 193 129 0 0 chr3 16303666 16303697 -211220881 + L2 LINE L2 3028 3058 -214 426 277 142 0 chr3 16303875 16304023 -211220555 - MIR SINE MIR -13 249 81 543 236 0 0 chr3 16304121 16304227 -211220351 - MER5A DNA MER1_type -80 109 4 288 314 132 0 chr3 16304273 16304394 -211220184 + MIR SINE MIR 123 259 -3 343 167 0 30 chr3 16305461 16305527 -211219051 - AluJ/FRAM SINE Alu -12 290 227 403 186 0 0 chr3 16305547 16305617 -211218961 - LTR12 LTR ERV1 -290 424 355 302 260 0 0 chr3 16305617 16305694 -211218884 - LTR30 LTR ERV1 -102 620 544 1127 141 34 93 chr3 16305696 16305987 -211218591 - LTR12 LTR ERV1 -440 274 1 559 189 0 0 chr3 16305993 16306083 -211218495 - FRAM/FAM SINE Alu -92 84 1 297 0 0 0 chr3 16306092 16306125 -211218453 + (TA)n Simple_repeat Simple_repeat 1 33 0 1944 177 71 0 chr3 16306233 16306628 -211217950 + LOR1b LTR ERV1 1 423 -38 11998 112 65 21 chr3 16306628 16306860 -211217718 + LOR1b-int LTR ERV1 32 252 -7868 2183 122 14 0 chr3 16306860 16307156 -211217422 - AluSg SINE Alu -10 300 1 11998 112 65 21 chr3 16307156 16307290 -211217288 + LOR1b-int LTR ERV1 252 379 -7741 279 0 0 0 chr3 16307290 16307321 -211217257 + (TG)n Simple_repeat Simple_repeat 2 32 0 11998 112 65 21 chr3 16307321 16307891 -211216687 + LOR1b-int LTR ERV1 379 922 -7198 2259 94 3 0 chr3 16307891 16308179 -211216399 + AluSx SINE Alu 1 289 -23 11998 112 65 21 chr3 16308179 16309309 -211215269 + LOR1b-int LTR ERV1 922 2201 -5919 2224 205 138 65 chr3 16309309 16310079 -211214499 + LTR1B LTR ERV1 1 826 0 11998 112 65 21 chr3 16310079 16310156 -211214422 + LOR1b-int LTR ERV1 2201 2273 -5847 7432 135 23 40 chr3 16310154 16310368 -211214210 + LOR1b-int LTR ERV1 2376 2592 -5528 * 2284 100 23 3 chr3 16310368 16310669 -211213909 - AluSx SINE Alu -3 309 3 7432 135 23 40 chr3 16310669 16311854 -211212724 + LOR1b-int LTR ERV1 2592 3751 -4369 6421 143 128 102 chr3 16311857 16313509 -211211069 - pTR5 LTR ERV1 0 2438 743 4915 129 39 1 chr3 16313511 16314317 -211210261 + LOR1b-int LTR ERV1 3754 4589 -3531 2488 71 0 3 chr3 16314317 16314614 -211209964 - AluY SINE Alu -15 296 1 750 235 71 6 chr3 16315691 16315861 -211208717 - MIR SINE MIR -81 181 1 234 0 0 0 chr3 16317228 16317254 -211207324 + (TTA)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr3 16317965 16317998 -211206580 + AT_rich Low_complexity Low_complexity 1 33 0 372 275 96 18 chr3 16320988 16321155 -211203423 + MER34 LTR ERV1 306 485 -57 215 277 75 32 chr3 16321344 16321438 -211203140 + L2 LINE L2 3209 3306 -7 458 243 221 7 chr3 16321598 16321736 -211202842 + MER5B DNA MER1_type 1 168 -10 427 250 62 94 chr3 16321736 16321928 -211202650 - MER5A DNA MER1_type -1 188 3 232 282 0 0 chr3 16322066 16322132 -211202446 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16322150 16322217 -211202361 - L2 LINE L2 -3 3269 3207 601 257 69 47 chr3 16322584 16322860 -211201718 + MLT1L LTR MaLR 1 282 -333 207 100 0 0 chr3 16322895 16322925 -211201653 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 376 280 0 9 chr3 16323258 16323365 -211201213 - AluY SINE Alu -194 107 2 775 235 73 14 chr3 16323535 16323819 -211200759 + LTR16C LTR ERVL 157 484 -7 706 197 45 0 chr3 16323854 16323986 -211200592 - MIR SINE MIR -107 155 18 432 248 66 25 chr3 16324004 16324125 -211200453 + MIR SINE MIR 124 249 -13 417 211 0 0 chr3 16324906 16325029 -211199549 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 368 395 0 7 chr3 16325046 16325193 -211199385 - L2 LINE L2 -18 3254 3109 632 241 47 65 chr3 16325750 16325982 -211198596 + MIR SINE MIR 1 228 -34 * 879 276 16 12 chr3 16325968 16326211 -211198367 - MIR SINE MIR 0 262 19 301 184 87 97 chr3 16327382 16327485 -211197093 - L1ME4a LINE L1 -9 6112 6011 328 281 21 21 chr3 16327527 16327623 -211196955 + MIR SINE MIR 86 181 -81 558 299 21 46 chr3 16327693 16328018 -211196560 - L1ME4a LINE L1 -194 5927 5611 2165 90 7 3 chr3 16328023 16328323 -211196255 + AluSx SINE Alu 1 301 -11 320 158 118 191 chr3 16328335 16328487 -211196091 + MLT1H LTR MaLR 409 549 0 774 189 223 55 chr3 16328526 16328592 -211195986 + MER69B DNA AcHobo 78 132 -2394 2170 169 39 7 chr3 16328592 16329023 -211195555 - L1MB7 LINE L1 0 6184 5740 774 189 223 55 chr3 16329023 16329194 -211195384 + MER69B DNA AcHobo 132 355 -2171 811 161 0 2 chr3 16329203 16329403 -211195175 + MSTC LTR MaLR 3 249 -179 * 2186 139 71 0 chr3 16329401 16329740 -211194838 + MSTC LTR MaLR 66 428 0 2335 245 77 38 chr3 16329746 16330543 -211194035 + MER69B DNA AcHobo 368 1195 -31 533 265 23 0 chr3 16331188 16331320 -211193258 - MER58B DNA MER1_type -4 337 203 272 242 37 0 chr3 16331657 16331744 -211192834 - MER58 DNA MER1_type -103 238 27 461 245 9 9 chr3 16331754 16331860 -211192718 + L2 LINE L2 3150 3255 -17 185 244 0 0 chr3 16332252 16332297 -211192281 - L2 LINE L2 -1 3312 3268 2200 106 0 0 chr3 16332425 16332726 -211191852 - AluSg SINE Alu -6 304 4 2175 84 0 10 chr3 16333446 16333742 -211190836 + AluY SINE Alu 4 296 -15 1084 136 0 0 chr3 16333743 16333898 -211190680 + AluSg/x SINE Alu 132 286 -24 231 324 20 0 chr3 16335172 16335274 -211189304 + LTR16C LTR ERVL 379 482 -9 190 293 132 28 chr3 16335395 16335501 -211189077 + L2 LINE L2 3108 3224 -48 886 226 11 5 chr3 16335507 16335693 -211188885 + MER72 LTR ERV1 1 187 -535 258 105 0 0 chr3 16335860 16335898 -211188680 + (A)n Simple_repeat Simple_repeat 1 38 0 3868 124 50 2 chr3 16336358 16336980 -211187598 + LOR1b-int LTR ERV1 3938 4589 -3531 815 91 0 0 chr3 16336980 16337090 -211187488 - AluY SINE Alu -15 296 187 5965 98 23 49 chr3 16337090 16338065 -211186513 + LOR1b-int LTR ERV1 4576 5524 -2596 1697 56 35 4 chr3 16338055 16338287 -211186291 + LOR1b-int LTR ERV1 5801 6039 -2081 * 525 167 11 0 chr3 16338289 16338379 -211186199 + LOR1b-int LTR ERV1 8030 8120 0 2334 156 66 14 chr3 16338379 16338816 -211185762 + LOR1b LTR ERV1 1 460 -1 2827 90 125 188 chr3 16339089 16340040 -211184538 - LTR12 LTR ERV1 0 2427 1 304 272 115 21 chr3 16340114 16340305 -211184273 + L2 LINE L2 2842 3050 -222 436 268 129 16 chr3 16340425 16340619 -211183959 + MER112 DNA MER1_type 39 254 -6 200 203 316 25 chr3 16340640 16340719 -211183859 + L2 LINE L2 3212 3313 0 225 94 0 0 chr3 16340817 16340849 -211183729 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 474 328 11 11 chr3 16340924 16341098 -211183480 + MER5A DNA MER1_type 7 180 -9 375 274 215 0 chr3 16341489 16341624 -211182954 - MIR SINE MIR -79 183 20 218 354 0 0 chr3 16341870 16341966 -211182612 + (CA)n Simple_repeat Simple_repeat 2 97 0 932 271 99 63 chr3 16342021 16342351 -211182227 + MLT1H LTR MaLR 37 392 -157 2397 67 0 3 chr3 16342351 16342648 -211181930 + AluSc SINE Alu 1 296 -13 932 271 99 63 chr3 16342648 16342812 -211181766 + MLT1H LTR MaLR 392 549 0 774 189 223 55 chr3 16342851 16342917 -211181661 + MER69B DNA AcHobo 78 132 -2394 2270 162 37 5 chr3 16342917 16343348 -211181230 - L1MB7 LINE L1 0 6184 5740 774 189 223 55 chr3 16343348 16343519 -211181059 + MER69B DNA AcHobo 132 355 -2171 811 161 0 2 chr3 16343528 16343728 -211180850 + MSTC LTR MaLR 3 249 -179 * 2213 136 71 0 chr3 16343726 16344065 -211180513 + MSTC LTR MaLR 66 428 0 2418 243 70 36 chr3 16344071 16344872 -211179706 + MER69B DNA AcHobo 368 1195 -31 681 220 23 0 chr3 16345517 16345649 -211178929 - MER58B DNA MER1_type -4 337 203 272 242 37 0 chr3 16345986 16346073 -211178505 - MER58 DNA MER1_type -103 238 27 299 153 17 17 chr3 16346083 16346142 -211178436 + L2 LINE L2 3150 3208 -64 267 103 0 0 chr3 16346451 16346490 -211178088 + (A)n Simple_repeat Simple_repeat 1 39 0 2102 196 15 10 chr3 16346514 16346918 -211177660 + MER72 LTR ERV1 317 722 0 227 238 0 0 chr3 16347183 16347225 -211177353 - MIR SINE MIR -3 259 218 429 232 39 15 chr3 16347864 16347993 -211176585 - MIR SINE MIR -62 146 62 2350 74 0 0 chr3 16348018 16348314 -211176264 + AluSc SINE Alu 1 296 -13 620 291 58 5 chr3 16348544 16348733 -211175845 - MIR SINE MIR -56 206 8 363 292 33 0 chr3 16348736 16348856 -211175722 - MIR SINE MIR -36 226 103 438 286 29 47 chr3 16349181 16349352 -211175226 - MIR3 SINE MIR -34 174 7 600 248 15 7 chr3 16349835 16349972 -211174606 - MIR SINE MIR -85 177 40 1305 149 0 14 chr3 16350275 16350497 -211174081 + AluJb SINE Alu 87 305 -7 508 239 89 61 chr3 16350568 16350748 -211173830 + MIR3 SINE MIR 6 190 -18 1398 217 16 82 chr3 16350804 16350954 -211173624 + L1ME3 LINE L1 5746 5904 -258 1763 148 3 21 chr3 16350954 16351245 -211173333 + AluJb SINE Alu 1 286 -26 414 0 0 0 chr3 16351249 16351295 -211173283 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1398 217 16 82 chr3 16351295 16351577 -211173001 + L1ME3 LINE L1 5907 6154 -8 221 300 0 0 chr3 16351590 16351660 -211172918 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 231 274 68 0 chr3 16352337 16352410 -211172168 + MER52A LTR ERV1 1 78 -1677 6060 164 50 66 chr3 16352818 16354236 -211170342 + MER52A LTR ERV1 318 1755 0 5881 118 252 85 chr3 16354506 16355960 -211168618 + pTR5 LTR ERV1 743 2438 0 484 281 31 19 chr3 16355963 16356123 -211168455 - MIR SINE MIR -81 181 20 469 281 126 36 chr3 16356809 16357111 -211167467 + LTR16A1 LTR ERVL 81 409 -48 201 103 0 0 chr3 16357133 16357162 -211167416 - MIR SINE MIR -117 145 117 2817 231 34 18 chr3 16357872 16358217 -211166361 - L1ME2 LINE L1 0 6164 5826 2163 99 3 0 chr3 16358217 16358520 -211166058 - AluSc SINE Alu -5 304 1 2817 231 34 18 chr3 16358520 16359012 -211165566 - L1ME2 LINE L1 -338 5826 5293 676 284 96 30 chr3 16359520 16359925 -211164653 + MLT1L LTR MaLR 165 596 -19 4379 230 47 94 chr3 16359985 16360347 -211164231 - L1MB7 LINE L1 -9 6175 5797 2191 104 0 0 chr3 16360347 16360645 -211163933 - AluSx SINE Alu -14 298 1 4379 230 47 94 chr3 16360645 16361271 -211163307 - L1MB7 LINE L1 -387 5797 5143 2074 100 10 7 chr3 16361271 16361570 -211163008 - AluSc SINE Alu -9 300 1 4379 230 47 94 chr3 16361570 16363216 -211161362 - L1MB7 LINE L1 -1041 5143 3681 * 4439 146 17 37 chr3 16363212 16363292 -211161286 - L1MA8 LINE L1 -260 6031 5951 2048 113 16 19 chr3 16363292 16363603 -211160975 - AluSg SINE Alu 0 310 1 4439 146 17 37 chr3 16363603 16363949 -211160629 - L1MA8 LINE L1 -340 5951 5600 2040 118 0 3 chr3 16363949 16364267 -211160311 - AluY SINE Alu 0 311 1 4439 146 17 37 chr3 16364267 16364556 -211160022 - L1MA8 LINE L1 -691 5600 5332 2257 102 0 13 chr3 16364556 16364871 -211159707 - AluY SINE Alu 0 311 1 4439 146 17 37 chr3 16364871 16365104 -211159474 - L1MA8 LINE L1 -959 5332 5096 625 71 0 0 chr3 16365105 16365189 -211159389 + MLT2A2 LTR ERVL 1 84 -369 * 1010 198 56 34 chr3 16365186 16365504 -211159074 + MLT2B3 LTR ERVL 230 554 0 5141 144 82 17 chr3 16365547 16366029 -211158549 - L1MA8 LINE L1 -1158 4988 4539 1070 171 6 11 chr3 16366029 16366205 -211158373 - FAM SINE Alu 0 175 1 5141 144 82 17 chr3 16366205 16366739 -211157839 - L1MA8 LINE L1 -1607 4539 3906 241 200 0 17 chr3 16366711 16366771 -211157807 - L1MB7 LINE L1 -2446 3700 3642 * 3534 215 44 8 chr3 16366782 16367737 -211156841 - L1MB7 LINE L1 -2812 3334 2346 * 4156 235 49 92 chr3 16367730 16368250 -211156328 - L1MEc LINE L1 -1099 5116 4575 233 185 0 19 chr3 16368250 16368304 -211156274 - HSMAR1 DNA Mariner 0 1287 1235 329 43 22 0 chr3 16368313 16368359 -211156219 + MADE1 DNA Mariner 33 79 -1 4156 235 49 92 chr3 16368359 16368432 -211156146 - L1MEc LINE L1 -1648 4567 4492 1534 176 10 23 chr3 16368432 16368733 -211155845 + AluJo SINE Alu 1 297 -15 4156 235 49 92 chr3 16368733 16370122 -211154456 - L1MEc LINE L1 -1723 4492 3116 3356 213 31 42 chr3 16370153 16370618 -211153960 - L1ME1 LINE L1 -84 6082 5613 2452 17 40 7 chr3 16370618 16370914 -211153664 + AluYa5 SINE Alu 1 306 -5 3356 213 31 42 chr3 16370914 16372047 -211152531 - L1ME1 LINE L1 -553 5613 4501 2076 244 118 40 chr3 16372046 16372687 -211151891 - L1MEc LINE L1 -3085 3130 2541 * 297 77 19 0 chr3 16372687 16372739 -211151839 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2129 96 0 0 chr3 16372739 16373021 -211151557 - AluSg SINE Alu -28 282 1 2076 244 118 40 chr3 16373021 16373476 -211151102 - L1MEc LINE L1 -3674 2541 1946 228 111 0 0 chr3 16373476 16373512 -211151066 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2076 244 118 40 chr3 16373512 16373666 -211150912 - L1MEc LINE L1 -4269 1946 1805 7360 43 7 0 chr3 16373752 16374820 -211149758 + L1PA5 LINE L1 5066 6139 -15 646 137 0 0 chr3 16376820 16376915 -211147663 - L1MC1 LINE L1 -17 6316 6222 1857 47 0 8 chr3 16378224 16378458 -211146120 - MER11A LTR ERVK -1034 232 1 256 296 35 61 chr3 16378510 16378625 -211145953 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16378645 16378986 -211145592 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16379143 16379318 -211145260 + MER20B DNA MER1_type 43 213 -6 2155 103 0 17 chr3 16379384 16379685 -211144893 + AluSg SINE Alu 1 296 -14 2204 94 0 0 chr3 16379685 16379982 -211144596 + AluY SINE Alu 1 297 -14 193 29 29 29 chr3 16379997 16380032 -211144546 + (GAA)n Simple_repeat Simple_repeat 3 37 0 1346 169 47 61 chr3 16380249 16380594 -211143984 - L1MC/D LINE L1 -513 5671 5288 2186 67 3 27 chr3 16380594 16380892 -211143686 + AluY SINE Alu 1 291 -20 1346 169 47 61 chr3 16380892 16380983 -211143595 - L1MC/D LINE L1 -896 5288 5197 184 129 0 0 chr3 16381117 16381148 -211143430 - L2 LINE L2 -17 3255 3225 204 278 68 115 chr3 16381361 16381613 -211142965 + L2 LINE L2 2465 2704 -610 211 172 62 109 chr3 16382250 16382314 -211142264 - MIR3 SINE MIR -43 165 105 309 276 158 16 chr3 16382315 16382442 -211142136 - MER5B DNA MER1_type 0 178 34 2085 114 0 7 chr3 16382812 16383111 -211141467 + AluY SINE Alu 1 297 -14 202 246 33 16 chr3 16383147 16383208 -211141370 + MER5A DNA MER1_type 128 189 0 400 266 50 14 chr3 16383258 16383397 -211141181 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16383854 16383938 -211140640 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16384567 16384728 -211139850 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16384879 16384904 -211139674 + (CA)n Simple_repeat Simple_repeat 2 26 0 1428 188 14 11 chr3 16384904 16385181 -211139397 - AluSx SINE Alu -17 295 18 281 333 64 30 chr3 16385183 16385324 -211139254 - MIR SINE MIR -66 142 1 331 344 84 15 chr3 16385524 16385655 -211138923 - L3 LINE CR1 -115 1462 1323 289 287 119 0 chr3 16385678 16385779 -211138799 - L2 LINE L2 -5 3267 3155 1279 183 0 20 chr3 16386952 16387198 -211137380 - AluJb SINE Alu -71 241 1 2068 110 10 0 chr3 16388029 16388321 -211136257 - AluSp SINE Alu -18 295 1 798 262 113 0 chr3 16388750 16388971 -211135607 + MIR SINE MIR 2 247 -15 209 250 27 89 chr3 16389465 16389577 -211135001 + MIR SINE MIR 1 105 -157 2324 85 0 19 chr3 16389582 16389899 -211134679 - AluSx SINE Alu -1 311 1 2069 108 0 0 chr3 16390051 16390351 -211134227 - AluSc SINE Alu 0 300 1 23 33 0 0 chr3 16390361 16390391 -211134187 + AT_rich Low_complexity Low_complexity 1 30 0 333 267 0 0 chr3 16390508 16390583 -211133995 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16390940 16391038 -211133540 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16391039 16391389 -211133189 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16391594 16391693 -211132885 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16391693 16392145 -211132433 + LTR10B LTR ERV1 1 547 0 2435 211 63 32 chr3 16392145 16392904 -211131674 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16392939 16393460 -211131118 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16393454 16394240 -211130338 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5286 273 57 40 chr3 16394225 16396037 -211128541 + LTR10B-int LTR ERV1 3124 4966 -2819 1906 234 28 0 chr3 16396087 16396476 -211128102 + BaEV-int LTR ERV1 4229 4628 -2021 2380 37 3 56 chr3 16396512 16396835 -211127743 + AluY SINE Alu 1 306 -5 3240 202 24 40 chr3 16396836 16397969 -211126609 - L1MC/D LINE L1 -743 5337 4435 2069 239 125 37 chr3 16397968 16398609 -211125969 - L1ME LINE L1 -3085 2995 2411 * 2129 96 0 0 chr3 16398609 16398943 -211125635 - AluSg SINE Alu 0 334 1 2069 239 125 37 chr3 16398943 16399398 -211125180 - L1ME LINE L1 -3669 2411 1809 228 111 0 0 chr3 16399398 16399434 -211125144 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2069 239 125 37 chr3 16399434 16399588 -211124990 - L1ME LINE L1 -4271 1809 1670 7454 41 7 3 chr3 16399674 16400759 -211123819 + L1PA5 LINE L1 5066 6153 -1 253 204 19 37 chr3 16400873 16400927 -211123651 + L3 LINE CR1 1052 1104 -473 414 265 75 55 chr3 16400939 16401139 -211123439 + Charlie8 DNA MER1_type 2 205 -2212 1443 156 4 4 chr3 16401188 16401425 -211123153 - AluSx SINE Alu -73 239 3 1052 258 44 34 chr3 16401441 16401545 -211123033 - L1ME LINE L1 -5047 1023 922 663 139 0 0 chr3 16401545 16401653 -211122925 - L1MA7 LINE L1 -2 6289 6182 1052 258 44 34 chr3 16401653 16402126 -211122452 - L1ME LINE L1 -5148 922 525 934 276 77 13 chr3 16403001 16403312 -211121266 + LTR16C LTR ERVL 147 477 -14 862 244 181 25 chr3 16403365 16403939 -211120639 + L2 LINE L2 2481 3147 -166 182 306 129 20 chr3 16404072 16404219 -211120359 + L2 LINE L2 3105 3267 -5 291 235 183 11 chr3 16404403 16404556 -211120022 + MIR SINE MIR 4 179 -63 463 264 76 100 chr3 16404626 16404876 -211119702 - MIR SINE MIR -17 245 2 283 274 12 0 chr3 16404978 16405062 -211119516 + MIR SINE MIR 43 127 -135 1433 231 71 37 chr3 16405062 16405552 -211119026 - MLT1E2 LTR MaLR 0 505 1 2414 51 3 0 chr3 16405571 16405920 -211118658 - AluY SINE Alu 0 311 1 784 286 109 10 chr3 16405958 16406373 -211118205 + LTR16C LTR ERVL 1 484 -7 706 197 45 0 chr3 16406408 16406540 -211118038 - MIR SINE MIR -107 155 18 432 248 66 25 chr3 16406558 16406679 -211117899 + MIR SINE MIR 124 249 -13 435 202 0 0 chr3 16407460 16407579 -211116999 + (TCCA)n Simple_repeat Simple_repeat 4 122 0 400 386 7 0 chr3 16407596 16407741 -211116837 - L2 LINE L2 -18 3254 3109 351 284 21 106 chr3 16407778 16408014 -211116564 + Charlie8 DNA MER1_type 10 225 -2192 279 254 51 65 chr3 16408550 16408688 -211115890 - LTR67 LTR ERVL -4 553 418 2465 202 48 72 chr3 16409208 16409684 -211114894 - L1MC5 LINE L1 -44 7917 7431 1580 171 45 0 chr3 16409684 16409970 -211114608 + AluJo SINE Alu 1 299 -13 2465 202 48 72 chr3 16409970 16410092 -211114486 - L1MC5 LINE L1 -530 7431 7308 1348 211 6 30 chr3 16410092 16410424 -211114154 + MER33 DNA MER1_type 1 324 0 2465 202 48 72 chr3 16410424 16410656 -211113922 - L1MC5 LINE L1 -653 7308 7106 334 286 102 53 chr3 16410677 16410883 -211113695 + L2 LINE L2 3027 3242 -71 358 281 47 31 chr3 16410933 16411061 -211113517 + MIR3 SINE MIR 3 132 -76 325 259 12 0 chr3 16411678 16411763 -211112815 - MIR SINE MIR -114 148 63 350 273 13 0 chr3 16411779 16411856 -211112722 - L2 LINE L2 0 3272 3195 2552 88 28 25 chr3 16411973 16412335 -211112243 - THE1B LTR MaLR 0 364 2 341 241 125 0 chr3 16412539 16412651 -211111927 - L2 LINE L2 -3 3310 3185 347 274 28 57 chr3 16412666 16412772 -211111806 - MER91C DNA MER1_type -35 105 3 458 210 68 56 chr3 16412776 16412938 -211111640 - L2 LINE L2 -123 3190 3027 246 206 206 9 chr3 16412939 16413046 -211111532 - LTR33 LTR ERVL -1 520 393 505 236 56 46 chr3 16413134 16413329 -211111249 - LTR33 LTR ERVL -308 213 17 819 260 131 26 chr3 16413527 16413989 -211110589 - L2 LINE L2 -316 2997 2479 3037 112 0 18 chr3 16413989 16414425 -211110153 + MSTC LTR MaLR 1 428 0 819 260 131 26 chr3 16414425 16414454 -211110124 - L2 LINE L2 -834 2479 2454 701 176 59 94 chr3 16414609 16414865 -211109713 + L1MC5 LINE L1 7670 7916 -45 2311 93 0 0 chr3 16414893 16415194 -211109384 + AluSx SINE Alu 1 301 -11 1429 164 30 43 chr3 16415226 16415531 -211109047 + L1MD2 LINE L1 6057 6357 -2 3967 142 27 24 chr3 16415531 16416193 -211108385 + L1MB3 LINE L1 5470 6137 -46 2051 116 0 10 chr3 16416193 16416494 -211108084 + AluSx SINE Alu 1 298 -14 3967 142 27 24 chr3 16416494 16416541 -211108037 + L1MB3 LINE L1 6137 6182 -1 196 375 45 0 chr3 16416865 16416953 -211107625 + L2 LINE L2 2982 3073 -199 522 246 23 0 chr3 16416964 16417094 -211107484 - MER94 DNA DNA -1 133 1 319 258 140 0 chr3 16417145 16417238 -211107340 + L2 LINE L2 3134 3239 -33 318 257 43 0 chr3 16417256 16417326 -211107252 + LTR16B LTR ERVL 386 458 -6 303 28 0 0 chr3 16417559 16417595 -211106983 + (TC)n Simple_repeat Simple_repeat 1 36 0 592 250 79 7 chr3 16417904 16418056 -211106522 - MER5B DNA MER1_type -1 177 15 4173 33 19 0 chr3 16418395 16418876 -211105702 + LTR2B LTR ERV1 1 490 0 241 322 22 11 chr3 16418923 16419013 -211105565 + L2 LINE L2 3173 3263 -9 246 265 31 31 chr3 16419077 16419175 -211105403 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 3925 232 96 97 chr3 16419226 16420197 -211104381 - L2 LINE L2 -8 3305 2335 1834 120 85 0 chr3 16420197 16420480 -211104098 + AluSx SINE Alu 1 307 -5 3925 232 96 97 chr3 16420480 16420975 -211103603 - L2 LINE L2 -978 2335 1841 531 212 24 3 chr3 16420975 16421118 -211103460 + MLT1H LTR MaLR 20 203 -346 3925 232 96 97 chr3 16421118 16421865 -211102713 - L2 LINE L2 -1472 1841 953 216 0 0 0 chr3 16421885 16421909 -211102669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1778 99 32 35 chr3 16421920 16422204 -211102374 - AluSq SINE Alu -30 283 1 2265 87 7 3 chr3 16422368 16422677 -211101901 - AluSx SINE Alu 0 312 3 310 280 152 15 chr3 16423044 16423176 -211101402 + MER5B DNA MER1_type 29 178 0 211 172 62 109 chr3 16423177 16423241 -211101337 + MIR3 SINE MIR 105 165 -43 230 284 65 111 chr3 16423869 16424130 -211100448 - L2 LINE L2 -601 2713 2465 187 129 0 0 chr3 16424345 16424376 -211100202 + L2 LINE L2 3225 3255 -17 3121 164 109 71 chr3 16424510 16424601 -211099977 + L1MB7 LINE L1 5197 5283 -901 2324 67 3 27 chr3 16424601 16424899 -211099679 - AluY SINE Alu -20 291 1 3121 164 109 71 chr3 16424899 16425301 -211099277 + L1MB7 LINE L1 5283 5668 -516 1741 159 0 0 chr3 16425301 16425552 -211099026 - AluJb SINE Alu -61 251 1 2213 118 7 0 chr3 16425561 16425858 -211098720 - AluSq SINE Alu -9 304 6 2330 104 0 0 chr3 16425858 16426157 -211098421 - AluSx SINE Alu -13 299 1 3121 164 109 71 chr3 16426157 16426596 -211097982 + L1MB7 LINE L1 5674 6184 0 500 308 91 0 chr3 16426598 16426741 -211097837 - MER91A DNA MER1_type -40 156 1 302 247 43 21 chr3 16427261 16427354 -211097224 + MIR SINE MIR 48 142 -120 180 379 74 0 chr3 16427656 16427751 -211096827 + L2 LINE L2 3082 3183 -89 * 460 231 0 28 chr3 16427744 16427852 -211096726 + MIR SINE MIR 87 191 -71 2311 208 79 12 chr3 16427903 16428408 -211096170 - MLT1F LTR MaLR 0 542 4 257 284 25 12 chr3 16428453 16428534 -211096044 - MIR SINE MIR -179 83 2 263 295 13 26 chr3 16428640 16428718 -211095860 - MIR3 SINE MIR -117 91 15 400 274 32 24 chr3 16428790 16428914 -211095664 + MIR SINE MIR 18 142 -66 1003 242 92 84 chr3 16428942 16429210 -211095368 - L2 LINE L2 -5 3308 3044 2138 132 0 3 chr3 16429210 16429505 -211095073 + AluSg SINE Alu 1 294 -16 1003 242 92 84 chr3 16429505 16429889 -211094689 - L2 LINE L2 -269 3044 2649 196 298 63 23 chr3 16430285 16430473 -211094105 + L2 LINE L2 2837 3036 -236 2804 124 13 0 chr3 16430473 16430923 -211093655 + L1P5 LINE L1 5334 5789 -367 517 247 48 12 chr3 16430961 16431127 -211093451 - MER20 DNA MER1_type -40 179 8 307 247 12 0 chr3 16431597 16431682 -211092896 + AluY SINE Alu 81 166 -135 336 275 0 44 chr3 16431738 16431829 -211092749 + L1MC4 LINE L1 6617 6703 -1339 529 163 0 20 chr3 16431855 16431953 -211092625 + L1PB4 LINE L1 5782 5877 -279 846 118 0 0 chr3 16432129 16432248 -211092330 + AluSg/x SINE Alu 193 311 -1 255 323 122 39 chr3 16432252 16432531 -211092047 + L2 LINE L2 2382 2683 -631 307 246 105 35 chr3 16432669 16432783 -211091795 + L2 LINE L2 2932 3053 -219 1765 232 107 42 chr3 16432938 16433649 -211090929 - L1ME3 LINE L1 0 6162 5406 308 289 128 7 chr3 16434487 16434636 -211089942 + L2 LINE L2 3139 3305 -8 195 250 33 17 chr3 16434715 16434775 -211089803 - MIR SINE MIR -74 188 128 699 257 60 49 chr3 16435007 16435231 -211089347 - MIR SINE MIR -41 221 5 2275 118 10 0 chr3 16435247 16435553 -211089025 + AluSc SINE Alu 1 309 0 1311 256 44 46 chr3 16435701 16436112 -211088466 - MLT1J LTR MaLR -2 509 100 225 0 0 0 chr3 16436157 16436182 -211088396 + (T)n Simple_repeat Simple_repeat 1 25 0 208 322 138 0 chr3 16436258 16436345 -211088233 + L2 LINE L2 3124 3222 -50 186 292 0 0 chr3 16436460 16436508 -211088070 + MIR SINE MIR 102 149 -113 355 252 148 22 chr3 16436591 16436726 -211087852 - L1ME4a LINE L1 -100 6021 5870 336 305 42 75 chr3 16436736 16436949 -211087629 + L1ME LINE L1 2 207 -5863 187 340 160 0 chr3 16437171 16437265 -211087313 - MIR3 SINE MIR -27 181 73 315 247 13 13 chr3 16437485 16437562 -211087016 - L1ME4a LINE L1 -2 6119 6043 248 237 99 153 chr3 16438022 16438153 -211086425 + MIR3 SINE MIR 37 160 -48 390 261 11 0 chr3 16438207 16438295 -211086283 - MIR SINE MIR -15 247 159 1096 300 101 17 chr3 16438296 16438822 -211085756 + MLT1K LTR MaLR 4 573 -15 1635 158 7 28 chr3 16438866 16439151 -211085427 - AluJo SINE Alu -33 279 1 422 176 133 46 chr3 16439169 16439320 -211085258 - MIR SINE MIR -63 145 8 657 244 37 83 chr3 16439352 16439594 -211084984 + MIR SINE MIR 8 238 -24 218 204 74 0 chr3 16439948 16440002 -211084576 + C-rich Low_complexity Low_complexity 2 59 0 935 199 52 47 chr3 16440448 16440659 -211083919 + MIR SINE MIR 19 230 -32 1422 164 13 51 chr3 16441383 16441694 -211082884 + AluJb SINE Alu 5 303 -9 615 159 188 7 chr3 16441719 16441857 -211082721 - L1M4 LINE L1 -529 5655 5493 332 208 42 21 chr3 16442096 16442192 -211082386 - MIR SINE MIR -108 154 57 529 243 81 27 chr3 16442965 16443113 -211081465 - MIR SINE MIR -72 190 35 705 315 42 4 chr3 16443626 16443864 -211080714 + MIR SINE MIR 6 252 -10 277 277 59 30 chr3 16443900 16444001 -211080577 + MIR3 SINE MIR 58 161 -47 216 243 162 88 chr3 16444237 16444385 -211080193 + MIR SINE MIR 32 190 -72 256 303 0 56 chr3 16444951 16445040 -211079538 + MIR SINE MIR 13 96 -166 * 341 336 107 0 chr3 16445039 16445161 -211079417 + L2 LINE L2 3138 3272 0 451 198 77 0 chr3 16445169 16445260 -211079318 + MIR SINE MIR 94 191 -71 259 317 165 18 chr3 16445422 16445586 -211078992 - MIR SINE MIR -40 222 35 1894 272 71 31 chr3 16445641 16446069 -211078509 - L1M4 LINE L1 -1601 4545 4136 2327 117 0 0 chr3 16446069 16446369 -211078209 + AluSx SINE Alu 1 300 -12 1894 272 71 31 chr3 16446369 16446915 -211077663 - L1M4 LINE L1 -2010 4136 3532 376 208 115 0 chr3 16447437 16447533 -211077045 - MIR SINE MIR -33 229 123 225 170 234 43 chr3 16448208 16448302 -211076276 - LTR33 LTR ERVL -363 158 47 385 257 55 0 chr3 16449615 16449724 -211074854 - MIR SINE MIR -51 211 97 337 283 75 0 chr3 16449726 16449832 -211074746 - L2 LINE L2 -658 2656 2543 225 0 0 0 chr3 16449953 16449978 -211074600 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 189 162 68 122 chr3 16450019 16450093 -211074485 + L2 LINE L2 1422 1491 -1823 184 209 90 45 chr3 16450369 16450436 -211074142 + L2 LINE L2 2686 2755 -559 884 225 57 33 chr3 16450553 16450797 -211073781 + MIR SINE MIR 11 260 -2 470 279 78 70 chr3 16450903 16451161 -211073417 + L2 LINE L2 3000 3259 -13 258 32 0 0 chr3 16451161 16451192 -211073386 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 279 0 0 0 chr3 16451617 16451648 -211072930 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 294 300 78 0 chr3 16452212 16452302 -211072276 - MIR SINE MIR -87 121 25 308 355 0 0 chr3 16453022 16453132 -211071446 - MIR SINE MIR -16 246 137 435 263 25 17 chr3 16453481 16453599 -211070979 - L2 LINE L2 -3 3310 3192 312 306 48 68 chr3 16454203 16454497 -211070081 + L1M2a LINE L1 1089 1376 -5792 642 264 201 5 chr3 16455224 16455607 -211068971 - L2 LINE L2 -341 2973 2516 180 364 164 0 chr3 16455685 16455795 -211068783 + MIR SINE MIR 120 247 -15 623 285 72 17 chr3 16456143 16456378 -211068200 + MIR SINE MIR 2 249 -13 282 233 79 45 chr3 16457143 16457264 -211067314 + MIR3 SINE MIR 26 154 -54 219 351 76 23 chr3 16457488 16457619 -211066959 - L2 LINE L2 -14 3258 3121 456 261 8 8 chr3 16457619 16457738 -211066840 - MIR SINE MIR -90 172 54 360 381 15 31 chr3 16457792 16458052 -211066526 - L2 LINE L2 -193 3079 2824 2109 140 10 3 chr3 16458197 16458504 -211066074 - AluSx SINE Alu -3 309 1 369 223 190 58 chr3 16458568 16458689 -211065889 + MER5A DNA MER1_type 32 168 -21 253 360 117 14 chr3 16459199 16459413 -211065165 - L2 LINE L2 -508 2806 2571 2448 48 20 3 chr3 16459793 16460085 -211064493 - AluY SINE Alu -14 297 1 556 282 106 22 chr3 16460227 16460454 -211064124 + MIR SINE MIR 15 260 -2 22 0 0 0 chr3 16460454 16460476 -211064102 + AT_rich Low_complexity Low_complexity 1 22 0 1287 62 6 50 chr3 16460483 16460686 -211063892 - AluY SINE Alu 0 307 113 34 0 0 0 chr3 16460692 16460726 -211063852 + AT_rich Low_complexity Low_complexity 1 34 0 327 173 120 0 chr3 16460741 16460816 -211063762 - MER103 DNA DNA -79 87 4 357 243 27 135 chr3 16461110 16461332 -211063246 + L2 LINE L2 2992 3189 -83 602 256 52 29 chr3 16462299 16462471 -211062107 - MIR SINE MIR -85 177 2 1292 243 87 57 chr3 16462521 16462960 -211061618 - MER20B DNA MER1_type -1 782 257 1896 134 19 51 chr3 16462960 16463274 -211061304 + AluJb SINE Alu 1 304 -8 1292 243 87 57 chr3 16463274 16463524 -211061054 - MER20B DNA MER1_type -526 257 16 2151 138 0 3 chr3 16463894 16464192 -211060386 + AluSx SINE Alu 1 297 -15 741 146 0 41 chr3 16464202 16464325 -211060253 + FLAM_C SINE Alu 1 118 -25 347 0 0 23 chr3 16464325 16464369 -211060209 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 592 274 41 118 chr3 16464492 16464832 -211059746 + L2 LINE L2 2959 3272 0 333 316 35 0 chr3 16465917 16466031 -211058547 + MIR SINE MIR 85 202 -60 2239 110 0 13 chr3 16466092 16466400 -211058178 + AluSx SINE Alu 5 308 -4 2614 62 0 0 chr3 16466422 16466728 -211057850 + AluY SINE Alu 1 306 -5 287 218 218 0 chr3 16466749 16466827 -211057751 + MIR SINE MIR 33 127 -81 1976 147 31 0 chr3 16466853 16467145 -211057433 - AluJo SINE Alu -11 301 1 3872 142 65 80 chr3 16467160 16467341 -211057237 - L1MB7 LINE L1 -10 6174 5992 2280 137 0 20 chr3 16467341 16467685 -211056893 - MER1B DNA MER1_type 0 337 1 3872 142 65 80 chr3 16467685 16468028 -211056550 - L1MB7 LINE L1 -192 5992 5645 492 18 0 0 chr3 16468028 16468085 -211056493 + (CA)n Simple_repeat Simple_repeat 1 57 0 1982 135 13 16 chr3 16468085 16468389 -211056189 + AluJb SINE Alu 1 303 -9 3872 142 65 80 chr3 16468389 16468712 -211055866 - L1MB7 LINE L1 -538 5646 5320 2437 80 3 0 chr3 16468712 16469014 -211055564 - AluY SINE Alu -8 303 1 3872 142 65 80 chr3 16469014 16469065 -211055513 - L1MB7 LINE L1 -864 5320 5283 2219 107 3 3 chr3 16469065 16469364 -211055214 - AluSg SINE Alu -11 299 1 3872 142 65 80 chr3 16469364 16469411 -211055167 - L1MB7 LINE L1 -901 5283 5237 183 83 0 0 chr3 16469412 16469436 -211055142 + MIR SINE MIR 116 139 -69 208 311 22 44 chr3 16469596 16469686 -211054892 - MIR SINE MIR -65 143 56 479 303 99 28 chr3 16469767 16469978 -211054600 - MIR SINE MIR -16 246 21 1033 219 23 5 chr3 16470413 16470628 -211053950 + MER20 DNA MER1_type 1 219 0 686 48 0 0 chr3 16470796 16470879 -211053699 - AluY SINE Alu -13 298 216 225 0 0 0 chr3 16470933 16470958 -211053620 + (T)n Simple_repeat Simple_repeat 1 25 0 319 286 82 0 chr3 16471069 16471167 -211053411 + L2 LINE L2 3143 3248 -24 1117 181 41 23 chr3 16471284 16471505 -211053073 - MIR SINE MIR -25 237 13 2257 102 3 7 chr3 16471714 16472019 -211052559 + AluSx SINE Alu 1 304 -8 281 306 28 28 chr3 16472189 16472297 -211052281 - MER5B DNA MER1_type -34 144 37 409 282 184 68 chr3 16472382 16472616 -211051962 + L2 LINE L2 3002 3262 -10 290 288 220 0 chr3 16472676 16472794 -211051784 + MIR SINE MIR 28 171 -91 329 271 56 28 chr3 16473481 16473588 -211050990 - MIR SINE MIR -63 199 90 335 342 17 4 chr3 16473883 16474117 -211050461 + L1ME4a LINE L1 4808 5044 -1102 37 23 0 0 chr3 16474487 16474531 -211050047 + AT_rich Low_complexity Low_complexity 1 44 0 226 301 89 41 chr3 16474535 16474658 -211049920 + MIR SINE MIR 86 214 -48 382 337 106 10 chr3 16474861 16475060 -211049518 - L1ME4a LINE L1 -213 5908 5691 313 315 45 0 chr3 16475282 16475393 -211049185 + L1ME4a LINE L1 5543 5658 -463 1146 185 189 0 chr3 16475396 16475645 -211048933 + AluSx SINE Alu 1 296 -16 791 274 13 8 chr3 16475647 16475884 -211048694 + L1ME4a LINE L1 5661 5898 -223 292 274 89 40 chr3 16476119 16476243 -211048335 - MIR SINE MIR -48 214 85 591 243 99 0 chr3 16476395 16476547 -211048031 + MIR SINE MIR 96 262 0 1613 148 89 0 chr3 16476726 16476837 -211047741 + AluSx SINE Alu 1 101 -211 206 93 0 23 chr3 16476837 16476880 -211047698 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1613 148 89 0 chr3 16476880 16477039 -211047539 + AluSx SINE Alu 101 295 -17 1259 137 42 54 chr3 16477308 16477428 -211047150 + AluJb SINE Alu 3 123 -189 240 111 0 0 chr3 16477428 16477473 -211047105 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1877 110 3 38 chr3 16477477 16477769 -211046809 - AluSx SINE Alu -30 282 1 1259 137 42 54 chr3 16477769 16477884 -211046694 + AluJb SINE Alu 126 240 -72 282 226 85 19 chr3 16478893 16478999 -211045579 - MER20B DNA MER1_type -657 126 14 1641 209 162 2 chr3 16479207 16479652 -211044926 - L1ME3A LINE L1 -6 6164 5649 806 112 0 0 chr3 16479694 16479801 -211044777 + FLAM_A SINE Alu 19 125 -17 1383 133 5 0 chr3 16480465 16480660 -211043918 - MLT1A1 LTR MaLR 0 365 170 1483 182 16 11 chr3 16480660 16480959 -211043619 - MLT1A1 LTR MaLR 0 365 4 372 277 117 15 chr3 16481338 16481475 -211043103 + MIR SINE MIR 71 221 -41 1869 117 42 3 chr3 16481622 16481905 -211042673 + AluSg SINE Alu 1 294 -16 273 323 184 14 chr3 16483106 16483388 -211041190 + L2 LINE L2 2648 2977 -337 799 83 19 0 chr3 16483486 16483594 -211040984 - AluSp/q SINE Alu -15 298 189 505 261 91 12 chr3 16483839 16483906 -211040672 + MER5A DNA MER1_type 12 72 -117 2312 54 0 54 chr3 16483906 16484219 -211040359 + AluY SINE Alu 3 298 -13 505 261 91 12 chr3 16484219 16484316 -211040262 + MER5A DNA MER1_type 72 189 0 400 266 50 14 chr3 16484366 16484505 -211040073 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16484962 16485046 -211039532 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16485670 16485831 -211038747 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16485982 16486007 -211038571 + (CA)n Simple_repeat Simple_repeat 2 26 0 1428 188 14 11 chr3 16486007 16486284 -211038294 - AluSx SINE Alu -17 295 18 281 333 64 30 chr3 16486286 16486427 -211038151 - MIR SINE MIR -66 142 1 506 277 70 76 chr3 16486450 16486793 -211037785 + L2 LINE L2 2921 3261 -11 1134 247 125 23 chr3 16486916 16487448 -211037130 + MLT1L LTR MaLR 1 612 -3 362 326 174 0 chr3 16487540 16487770 -211036808 + L2 LINE L2 3002 3271 -1 341 250 0 0 chr3 16487859 16487927 -211036651 + MIR3 SINE MIR 93 160 -48 187 364 27 43 chr3 16488378 16488565 -211036013 - L2 LINE L2 -273 2999 2816 2039 102 0 3 chr3 16489196 16489521 -211035057 + AluSx SINE Alu 1 324 0 222 222 37 19 chr3 16489550 16489604 -211034974 + MIR3 SINE MIR 150 204 -4 4334 153 27 10 chr3 16489672 16490439 -211034139 - L1MC1 LINE L1 -9 6324 5545 2692 221 25 0 chr3 16490449 16491054 -211033524 - L1MC1 LINE L1 -1010 5136 4517 816 305 111 32 chr3 16491238 16491679 -211032899 - L2 LINE L2 0 3272 2792 439 323 120 5 chr3 16491711 16491903 -211032675 - MIR SINE MIR -28 234 21 894 230 31 5 chr3 16492454 16492650 -211031928 + MIR SINE MIR 31 231 -31 2125 113 0 7 chr3 16492736 16493038 -211031540 - AluSx SINE Alu -12 300 1 2069 108 0 0 chr3 16493190 16493490 -211031088 - AluSc SINE Alu 0 300 1 333 267 0 0 chr3 16493647 16493722 -211030856 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16494079 16494177 -211030401 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16494178 16494528 -211030050 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16494733 16494832 -211029746 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16494832 16495284 -211029294 + LTR10B LTR ERV1 1 547 0 2435 211 63 32 chr3 16495284 16496043 -211028535 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16496078 16496599 -211027979 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16496593 16497379 -211027199 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5245 273 58 42 chr3 16497364 16499179 -211025399 + LTR10B-int LTR ERV1 3124 4966 -2819 1868 234 31 0 chr3 16499229 16499617 -211024961 + BaEV-int LTR ERV1 4229 4628 -2021 2302 41 3 57 chr3 16499653 16499970 -211024608 + AluY SINE Alu 1 300 -11 1678 158 10 10 chr3 16499971 16500269 -211024309 + AluSx SINE Alu 1 298 -14 920 182 161 108 chr3 16500384 16500670 -211023908 - AluJo SINE Alu -1 301 1 180 0 0 0 chr3 16500936 16500956 -211023622 + (A)n Simple_repeat Simple_repeat 1 20 0 346 293 49 73 chr3 16501087 16501333 -211023245 - MLT1L LTR MaLR -228 387 148 490 264 91 8 chr3 16501416 16501537 -211023041 + L2 LINE L2 3183 3313 0 244 245 19 0 chr3 16501546 16501599 -211022979 - MLT1L LTR MaLR -560 55 2 21 0 0 0 chr3 16503460 16503481 -211021097 + AT_rich Low_complexity Low_complexity 1 21 0 366 291 79 62 chr3 16503668 16503960 -211020618 + MARNA DNA Mariner 61 357 -229 471 287 30 12 chr3 16504028 16504192 -211020386 - MIR SINE MIR -46 216 50 1743 174 0 0 chr3 16504250 16504548 -211020030 + AluSx SINE Alu 1 298 -14 264 295 32 0 chr3 16504676 16504771 -211019807 + MARNA DNA Mariner 478 575 -11 188 338 14 27 chr3 16505504 16505578 -211019000 + L2 LINE L2 3174 3246 -26 450 206 82 106 chr3 16505592 16505762 -211018816 - MIR SINE MIR -10 252 87 1722 164 3 0 chr3 16506100 16506382 -211018196 + AluJb SINE Alu 1 286 -26 216 0 0 0 chr3 16506382 16506406 -211018172 + (AAATG)n Simple_repeat Simple_repeat 2 25 0 1722 164 3 0 chr3 16506406 16506422 -211018156 + AluJb SINE Alu 286 300 -12 1640 191 86 19 chr3 16506986 16507357 -211017221 - MSTD LTR MaLR 0 396 1 728 224 20 57 chr3 16507845 16507856 -211016722 - L1ME2 LINE L1 0 6184 6174 2185 116 0 3 chr3 16507856 16508167 -211016411 + AluSx SINE Alu 1 310 -2 728 224 20 57 chr3 16508167 16508380 -211016198 - L1ME2 LINE L1 -10 6174 5951 3221 142 79 39 chr3 16508382 16508600 -211015978 + MER41B LTR ERV1 1 209 -426 706 122 7 108 chr3 16508600 16508748 -211015830 + FLAM_C SINE Alu 1 133 0 3221 142 79 39 chr3 16508748 16508889 -211015689 + MER41B LTR ERV1 209 343 -292 2158 115 0 3 chr3 16508889 16509193 -211015385 + AluSx SINE Alu 1 303 -9 3221 142 79 39 chr3 16509193 16509258 -211015320 + MER41B LTR ERV1 343 404 -231 1927 151 0 0 chr3 16509258 16509562 -211015016 + AluSx SINE Alu 1 304 -8 3221 142 79 39 chr3 16509562 16509621 -211014957 + MER41B LTR ERV1 404 459 -176 2064 122 3 3 chr3 16509621 16509925 -211014653 - AluSx SINE Alu -8 304 1 3221 142 79 39 chr3 16509925 16510049 -211014529 + MER41B LTR ERV1 459 635 0 290 217 152 0 chr3 16510057 16510149 -211014429 - L1ME2 LINE L1 -217 5953 5848 264 240 0 0 chr3 16510327 16510377 -211014201 + MER92B LTR ERV1 1 50 -586 2050 117 27 0 chr3 16510395 16510668 -211013910 + AluSx SINE Alu 1 265 -47 282 29 0 0 chr3 16510668 16510703 -211013875 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 306 0 0 0 chr3 16510702 16510736 -211013842 + (CA)n Simple_repeat Simple_repeat 1 34 0 2050 117 27 0 chr3 16510703 16510760 -211013818 + AluSx SINE Alu 265 306 -6 611 135 48 0 chr3 16510760 16510864 -211013714 - MER41A LTR ERV1 -12 542 434 2063 114 7 3 chr3 16510864 16511171 -211013407 + AluSx SINE Alu 1 308 -4 569 125 0 0 chr3 16511189 16511269 -211013309 + AluSg/x SINE Alu 119 198 -112 923 101 7 0 chr3 16511278 16511417 -211013161 + AluSg/x SINE Alu 171 310 0 3223 151 8 6 chr3 16511418 16511934 -211012644 - MER41B LTR ERV1 -118 517 1 2207 110 0 3 chr3 16511957 16512267 -211012311 + AluSq SINE Alu 1 309 -4 2414 81 0 0 chr3 16512267 16512576 -211012002 + AluY SINE Alu 1 309 -2 1788 159 0 0 chr3 16512581 16512871 -211011707 + AluJo SINE Alu 2 291 -21 1585 216 162 2 chr3 16513589 16514034 -211010544 - L1ME3A LINE L1 -6 6164 5649 517 202 10 0 chr3 16514083 16514182 -211010396 + FLAM_A SINE Alu 26 125 -17 1383 133 5 0 chr3 16514846 16515041 -211009537 - MLT1A1 LTR MaLR 0 365 170 1460 186 16 11 chr3 16515041 16515340 -211009238 - MLT1A1 LTR MaLR 0 365 4 372 277 117 15 chr3 16515719 16515856 -211008722 + MIR SINE MIR 71 221 -41 1869 117 42 3 chr3 16516003 16516286 -211008292 + AluSg SINE Alu 1 294 -16 273 323 184 14 chr3 16517487 16517769 -211006809 + L2 LINE L2 2648 2977 -337 799 83 19 0 chr3 16517867 16517975 -211006603 - AluSp/q SINE Alu -15 298 189 441 136 0 0 chr3 16518220 16518286 -211006292 + MER5A DNA MER1_type 12 77 -112 2277 84 0 0 chr3 16518287 16518584 -211005994 + AluY SINE Alu 3 299 -12 3983 142 65 80 chr3 16518587 16518925 -211005653 + L1MB7 LINE L1 5323 5665 -519 1833 124 14 17 chr3 16518925 16519215 -211005363 - AluJb SINE Alu -23 289 1 492 18 0 0 chr3 16519215 16519272 -211005306 + (TG)n Simple_repeat Simple_repeat 1 57 0 3983 142 65 80 chr3 16519272 16519615 -211004963 + L1MB7 LINE L1 5664 5992 -192 2236 137 0 20 chr3 16519615 16519959 -211004619 + MER1B DNA MER1_type 1 337 0 3983 142 65 80 chr3 16519959 16520140 -211004438 + L1MB7 LINE L1 5992 6174 -10 1846 147 27 0 chr3 16520155 16520448 -211004130 + AluJo SINE Alu 1 301 -11 285 218 218 0 chr3 16520474 16520552 -211004026 - MIR SINE MIR -81 127 33 2468 62 0 0 chr3 16520573 16520879 -211003699 - AluY SINE Alu -5 306 1 2266 133 96 57 chr3 16520879 16520901 -211003677 - MER41B LTR ERV1 -165 470 450 1935 145 0 10 chr3 16520901 16521212 -211003366 - AluSx SINE Alu -4 308 1 2266 133 96 57 chr3 16521212 16521277 -211003301 - MER41B LTR ERV1 -185 450 389 2141 116 0 3 chr3 16521277 16521579 -211002999 - AluSx SINE Alu -11 301 1 2266 133 96 57 chr3 16521579 16521720 -211002858 - MER41B LTR ERV1 -246 389 255 706 122 7 108 chr3 16521720 16521868 -211002710 - FLAM_C SINE Alu 0 133 1 2266 133 96 57 chr3 16521868 16522086 -211002492 - MER41B LTR ERV1 -380 255 1 728 224 20 57 chr3 16522088 16522301 -211002277 + L1ME2 LINE L1 5951 6174 -10 2137 122 0 3 chr3 16522301 16522612 -211001966 - AluSx SINE Alu -2 310 1 728 224 20 57 chr3 16522612 16522623 -211001955 + L1ME2 LINE L1 6174 6184 0 1640 191 86 19 chr3 16523111 16523482 -211001096 + MSTD LTR MaLR 1 396 0 1722 164 3 0 chr3 16524046 16524062 -211000516 - AluJb SINE Alu -12 300 286 216 0 0 0 chr3 16524062 16524086 -211000492 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 1722 164 3 0 chr3 16524086 16524368 -211000210 - AluJb SINE Alu -26 286 1 450 206 82 106 chr3 16524706 16524876 -210999702 + MIR SINE MIR 87 252 -10 188 338 14 27 chr3 16524890 16524964 -210999614 - L2 LINE L2 -26 3246 3174 225 309 43 0 chr3 16525698 16525792 -210998786 - MARNA DNA Mariner -11 575 478 1992 137 0 0 chr3 16525925 16526218 -210998360 - AluSx SINE Alu -19 293 1 458 287 30 12 chr3 16526276 16526440 -210998138 + MIR SINE MIR 50 216 -46 375 301 68 51 chr3 16526508 16526800 -210997778 - MARNA DNA Mariner -229 357 61 21 0 0 0 chr3 16526987 16527008 -210997570 + AT_rich Low_complexity Low_complexity 1 21 0 244 245 19 0 chr3 16528869 16528922 -210995656 + MLT1L LTR MaLR 2 55 -560 490 264 91 8 chr3 16528931 16529052 -210995526 - L2 LINE L2 0 3313 3183 363 298 46 69 chr3 16529115 16529377 -210995201 + MLT1L LTR MaLR 132 387 -228 198 0 0 0 chr3 16529508 16529530 -210995048 + (T)n Simple_repeat Simple_repeat 1 22 0 896 185 161 108 chr3 16529796 16530082 -210994496 + AluJo SINE Alu 1 301 -1 2003 113 3 13 chr3 16530197 16530498 -210994080 - AluSx SINE Alu -14 298 1 2279 99 0 0 chr3 16530499 16530801 -210993777 - AluSx SINE Alu -10 302 1 2069 108 0 0 chr3 16530953 16531253 -210993325 - AluSc SINE Alu 0 300 1 23 33 0 0 chr3 16531263 16531293 -210993285 + AT_rich Low_complexity Low_complexity 1 30 0 333 267 0 0 chr3 16531410 16531485 -210993093 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16531841 16531939 -210992639 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16531940 16532290 -210992288 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16532495 16532594 -210991984 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16532594 16533046 -210991532 + LTR10B LTR ERV1 1 547 0 2435 211 64 32 chr3 16533046 16533804 -210990774 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16533839 16534360 -210990218 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16534354 16535140 -210989438 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5302 275 57 40 chr3 16535125 16536937 -210987641 + LTR10B-int LTR ERV1 3124 4966 -2819 11068 216 22 29 chr3 16536987 16537412 -210987166 + LTR10B-int LTR ERV1 4229 4656 -1993 2285 55 3 55 chr3 16537412 16537740 -210986838 + AluY SINE Alu 1 311 0 11068 216 22 29 chr3 16537740 16538345 -210986233 + LTR10B-int LTR ERV1 4656 5264 -1385 2363 65 0 23 chr3 16538345 16538653 -210985925 - AluY SINE Alu -10 301 1 11068 216 22 29 chr3 16538653 16540060 -210984518 + LTR10B-int LTR ERV1 5264 6649 0 1799 199 51 27 chr3 16540060 16540510 -210984068 + LTR10B LTR ERV1 1 547 0 1481 123 9 0 chr3 16540510 16540722 -210983856 - AluSx SINE Alu -94 218 5 1233 133 0 33 chr3 16540796 16541006 -210983572 - AluJo SINE Alu -109 203 1 660 181 0 0 chr3 16541613 16541779 -210982799 + (TG)n Simple_repeat Simple_repeat 1 166 0 252 188 0 0 chr3 16541795 16541864 -210982714 + (TG)n Simple_repeat Simple_repeat 1 69 0 242 277 89 10 chr3 16541870 16541971 -210982607 + MIR SINE MIR 84 192 -70 331 229 9 101 chr3 16542283 16542392 -210982186 - MIR SINE MIR -73 135 37 1931 149 0 0 chr3 16542396 16542697 -210981881 - AluSx SINE Alu -11 301 1 932 212 15 30 chr3 16542703 16542906 -210981672 - MER20 DNA MER1_type 0 219 20 444 264 16 24 chr3 16542956 16543081 -210981497 + L3 LINE CR1 1344 1467 -110 261 200 0 0 chr3 16543179 16543224 -210981354 + L2 LINE L2 3251 3295 -18 1745 252 74 13 chr3 16543347 16543795 -210980783 + MLT1J LTR MaLR 37 511 0 212 339 132 23 chr3 16543976 16544150 -210980428 - L2 LINE L2 -214 3058 2866 300 330 19 10 chr3 16544429 16544532 -210980046 + L2 LINE L2 3163 3266 -6 2060 117 3 0 chr3 16544554 16544853 -210979725 + AluSx SINE Alu 1 300 -12 345 267 30 0 chr3 16545037 16545138 -210979440 + L1ME LINE L1 5639 5742 -379 1968 138 68 200 chr3 16545178 16545263 -210979315 - LTR12 LTR ERV1 -136 578 483 2317 77 3 3 chr3 16545263 16545573 -210979005 - AluY SINE Alu -1 310 1 1968 138 68 200 chr3 16545573 16545984 -210978594 - LTR12 LTR ERV1 -231 483 190 2260 77 0 7 chr3 16545984 16546282 -210978296 - AluY SINE Alu -15 296 1 1968 138 68 200 chr3 16546282 16546450 -210978128 - LTR12 LTR ERV1 -524 190 1 560 287 122 47 chr3 16547552 16547806 -210976772 - Charlie8 DNA MER1_type -2142 275 3 4335 187 69 12 chr3 16548325 16549514 -210975064 + L1MB7 LINE L1 4915 6183 -1 315 0 0 0 chr3 16549973 16550008 -210974570 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2391 80 0 6 chr3 16550069 16550380 -210974198 + AluSg SINE Alu 1 309 -1 24 53 0 0 chr3 16551307 16551345 -210973233 + AT_rich Low_complexity Low_complexity 1 38 0 198 167 0 0 chr3 16551404 16551440 -210973138 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1669 131 54 0 chr3 16551593 16551877 -210972701 - AluSg SINE Alu 0 303 6 2663 245 63 27 chr3 16551897 16552794 -210971784 + L1MD1 LINE L1 16 1088 -5452 2300 82 0 0 chr3 16552817 16553111 -210971467 - AluY SINE Alu -17 294 1 449 220 53 0 chr3 16553117 16553267 -210971311 + L1MD1 LINE L1 1200 1357 -5186 208 203 17 17 chr3 16553682 16553741 -210970837 + GA-rich Low_complexity Low_complexity 2 60 0 2355 184 64 32 chr3 16554582 16555206 -210969372 + L1MD1 LINE L1 1303 1946 -4594 4920 197 41 14 chr3 16555210 16555753 -210968825 + L1MD1 LINE L1 4833 5360 -1393 2166 89 14 0 chr3 16555753 16556044 -210968534 + AluSc SINE Alu 1 295 -14 4920 197 41 14 chr3 16556044 16557242 -210967336 + L1MD1 LINE L1 5360 6753 0 278 182 61 30 chr3 16557277 16557343 -210967235 + MER5B DNA MER1_type 111 178 0 532 183 0 0 chr3 16557405 16557498 -210967080 - MER5A DNA MER1_type -86 103 11 198 344 21 52 chr3 16557501 16557693 -210966885 + MER5A DNA MER1_type 1 186 -3 314 285 49 24 chr3 16557975 16558098 -210966480 + L2 LINE L2 2579 2704 -610 729 255 142 71 chr3 16558106 16558557 -210966021 + MER113 DNA MER1_type? 6 488 -33 269 258 56 11 chr3 16558685 16558774 -210965804 + L2 LINE L2 2871 2963 -309 229 294 29 20 chr3 16558850 16558952 -210965626 + GA-rich Low_complexity Low_complexity 2 104 0 1879 135 24 7 chr3 16559107 16559404 -210965174 - AluSx SINE Alu -10 302 1 271 274 71 12 chr3 16559430 16559506 -210965072 + L2 LINE L2 3181 3261 -52 708 175 15 130 chr3 16559506 16559650 -210964928 - MER5B DNA MER1_type 0 178 62 751 232 20 0 chr3 16559650 16559801 -210964777 - FRAM SINE Alu -12 154 1 708 175 15 130 chr3 16559801 16559856 -210964722 - MER5B DNA MER1_type -116 62 2 196 283 35 97 chr3 16559986 16560099 -210964479 - L2 LINE L2 0 3272 3167 2168 94 3 0 chr3 16560453 16560752 -210963826 + AluSx SINE Alu 1 300 -12 447 239 183 7 chr3 16560906 16561048 -210963530 + L2 LINE L2 2591 2757 -557 2071 116 0 3 chr3 16561132 16561433 -210963145 - AluSx SINE Alu -10 302 3 307 322 43 54 chr3 16561895 16562153 -210962425 + L2 LINE L2 2852 3106 -166 1033 101 7 0 chr3 16562191 16562340 -210962238 + AluSg/x SINE Alu 137 286 -26 563 231 56 0 chr3 16562752 16562895 -210961683 + L1 LINE L1 4134 4284 -1862 388 280 86 23 chr3 16563142 16563317 -210961261 - MIR SINE MIR -49 213 28 2327 59 0 10 chr3 16563319 16563624 -210960954 - AluY SINE Alu -9 302 1 243 354 126 24 chr3 16563763 16563890 -210960688 + L2 LINE L2 3108 3247 -25 218 262 97 87 chr3 16564197 16564300 -210960278 + MIR3 SINE MIR 76 179 -29 2169 81 0 20 chr3 16564529 16564826 -210959752 - AluY SINE Alu -18 293 3 2427 78 0 0 chr3 16564828 16565135 -210959443 - AluSc SINE Alu -2 307 1 2567 150 7 72 chr3 16565964 16566472 -210958106 + L1MB3 LINE L1 5676 6148 -35 2092 108 3 10 chr3 16566472 16566769 -210957809 - AluSx SINE Alu -17 295 1 2567 150 7 72 chr3 16566769 16566801 -210957777 + L1MB3 LINE L1 6148 6181 -2 254 345 44 9 chr3 16567682 16567795 -210956783 - MIR SINE MIR -74 134 18 660 308 24 0 chr3 16567801 16568009 -210956569 - MIR SINE MIR -3 259 47 189 0 0 0 chr3 16568069 16568090 -210956488 + (A)n Simple_repeat Simple_repeat 1 21 0 2084 121 0 10 chr3 16568298 16568611 -210955967 - AluSg SINE Alu 0 310 1 485 206 22 59 chr3 16568617 16568753 -210955825 - L1MB3 LINE L1 -2 6181 6051 2039 106 3 3 chr3 16568854 16569167 -210955411 + AluSg SINE Alu 1 313 0 2133 113 3 3 chr3 16569167 16569478 -210955100 + AluSx SINE Alu 1 311 -1 2289 82 0 10 chr3 16569575 16569878 -210954700 - AluSg SINE Alu -10 300 1 501 305 26 13 chr3 16569946 16570179 -210954399 - L1MC5 LINE L1 -436 7525 7290 3406 156 11 58 chr3 16570294 16570499 -210954079 - L1MB2 LINE L1 -3 6168 5955 2166 98 3 0 chr3 16570499 16570795 -210953783 - AluSx SINE Alu -15 297 1 3406 156 11 58 chr3 16570795 16570816 -210953762 - L1MB2 LINE L1 -216 5955 5935 2018 108 0 40 chr3 16570816 16571141 -210953437 - AluSx SINE Alu 0 312 1 1886 155 0 3 chr3 16571143 16571446 -210953132 - AluSx SINE Alu -10 302 1 3406 156 11 58 chr3 16571446 16571875 -210952703 - L1MB2 LINE L1 -237 5934 5540 454 258 68 32 chr3 16571974 16572164 -210952414 + L1ME4a LINE L1 5717 5913 -208 2365 80 0 3 chr3 16572302 16572613 -210951965 + AluY SINE Alu 1 310 -1 386 278 89 39 chr3 16573102 16573282 -210951296 - MER117 DNA MER1_type -6 191 3 243 0 0 0 chr3 16573417 16573444 -210951134 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 186 281 18 0 chr3 16574204 16574261 -210950317 - MIR SINE MIR -6 256 199 1134 167 144 121 chr3 16574265 16574613 -210949965 + MLT1A1 LTR MaLR 4 359 -6 568 234 82 22 chr3 16575205 16575389 -210949189 + MIR SINE MIR 62 256 -6 360 296 127 32 chr3 16576162 16576351 -210948227 + MIR SINE MIR 27 233 -29 304 293 20 0 chr3 16577264 16577363 -210947215 - MER103 DNA DNA -50 116 16 2436 87 0 0 chr3 16577816 16578125 -210946453 - AluY SINE Alu -2 309 1 805 192 0 0 chr3 16578480 16578605 -210945973 - FLAM_A SINE Alu -7 126 2 2903 114 21 5 chr3 16578743 16579171 -210945407 + L1PA13 LINE L1 5718 6152 -11 680 155 0 106 chr3 16579355 16579497 -210945081 + FLAM_A SINE Alu 13 139 -3 22 0 0 0 chr3 16579625 16579647 -210944931 + AT_rich Low_complexity Low_complexity 1 22 0 231 103 0 0 chr3 16579647 16579686 -210944892 + (GA)n Simple_repeat Simple_repeat 2 40 0 2215 86 0 4 chr3 16579687 16579966 -210944612 - AluSc SINE Alu -31 278 1 1791 138 7 21 chr3 16580170 16580484 -210944094 + AluJb SINE Alu 7 316 0 226 222 0 0 chr3 16581582 16581627 -210942951 - L2 LINE L2 -18 3295 3251 321 315 52 95 chr3 16581697 16581830 -210942748 - L2 LINE L2 -42 3230 3093 2163 122 0 7 chr3 16581830 16582133 -210942445 + AluSq SINE Alu 1 301 -12 321 315 52 95 chr3 16582133 16582326 -210942252 - L2 LINE L2 -179 3093 2918 321 343 202 15 chr3 16582355 16582950 -210941628 - L2 LINE L2 -494 2820 2115 180 298 48 29 chr3 16582941 16583045 -210941533 - MIR3 SINE MIR -54 154 49 * 264 337 52 73 chr3 16583328 16583914 -210940664 - L2 LINE L2 -28 3244 2620 454 221 150 0 chr3 16584356 16584496 -210940082 - MIR SINE MIR -16 246 86 2458 91 0 0 chr3 16584525 16584834 -210939744 + AluSg SINE Alu 1 309 -1 1047 91 0 0 chr3 16585275 16585407 -210939171 + AluY SINE Alu 1 132 -179 303 274 142 18 chr3 16585699 16585812 -210938766 - L2 LINE L2 -1 3271 3145 1727 116 71 15 chr3 16586507 16586799 -210937779 - AluSq SINE Alu 0 307 1 212 152 0 0 chr3 16587064 16587097 -210937481 + MER5B DNA MER1_type 100 132 -46 1730 172 14 7 chr3 16587109 16587406 -210937172 + AluSg SINE Alu 1 299 -11 2302 95 30 0 chr3 16588035 16588339 -210936239 - AluSq SINE Alu 0 313 1 636 209 44 73 chr3 16589203 16589337 -210935241 + MER46C DNA MER2_type 5 132 -206 1561 197 7 7 chr3 16589337 16589616 -210934962 + AluJb SINE Alu 1 279 -33 636 209 44 73 chr3 16589616 16589687 -210934891 + MER46C DNA MER2_type 132 204 -134 1533 71 15 15 chr3 16590257 16590454 -210934124 + AluSc SINE Alu 99 295 -14 1774 143 38 0 chr3 16590522 16590809 -210933769 + L1MB2 LINE L1 5873 6170 -1 180 330 41 41 chr3 16592034 16592131 -210932447 - L2 LINE L2 -3 3269 3173 1870 159 0 17 chr3 16592190 16592491 -210932087 - AluSx SINE Alu -16 296 1 268 187 43 41 chr3 16592556 16592633 -210931945 - MIR SINE MIR -61 147 83 249 295 248 22 chr3 16592702 16592907 -210931671 - L2 LINE L2 -874 2440 2283 2292 130 42 11 chr3 16592907 16593261 -210931317 + MER47A DNA MER2_type 2 366 0 249 295 248 22 chr3 16593261 16593564 -210931014 - L2 LINE L2 -1031 2283 1817 313 330 133 6 chr3 16594618 16594791 -210929787 + MIR3 SINE MIR 14 208 0 214 225 12 88 chr3 16595112 16595192 -210929386 - L2 LINE L2 -2 3311 3238 266 163 138 12 chr3 16595405 16595485 -210929093 - MLT1J1 LTR MaLR 0 446 357 268 259 53 117 chr3 16595507 16595754 -210928824 - MLT1J2 LTR MaLR -153 297 67 2520 47 3 0 chr3 16595866 16596162 -210928416 + AluY SINE Alu 2 298 -13 2354 36 7 55 chr3 16596270 16596579 -210927999 + AluY SINE Alu 1 294 -17 366 284 11 11 chr3 16596699 16596794 -210927784 + L2 LINE L2 3170 3264 -8 1388 126 50 50 chr3 16597303 16597565 -210927013 - L1MB7 LINE L1 -13 6171 5910 186 293 12 61 chr3 16597573 16597655 -210926923 - MIR3 SINE MIR -125 83 6 310 220 83 46 chr3 16598937 16599046 -210925532 + MIR SINE MIR 1 113 -95 398 306 99 0 chr3 16601038 16601159 -210923419 + L2 LINE L2 3134 3266 -6 208 241 17 0 chr3 16602148 16602206 -210922372 + (CA)n Simple_repeat Simple_repeat 2 60 0 1889 144 32 0 chr3 16602356 16602640 -210921938 + AluJb SINE Alu 3 295 -17 2523 64 0 0 chr3 16603097 16603394 -210921184 - AluY SINE Alu -14 297 1 1851 137 27 23 chr3 16603784 16604083 -210920495 + AluSx SINE Alu 1 300 -12 1578 136 26 22 chr3 16604383 16604656 -210919922 + L1MB7 LINE L1 5895 6168 -16 340 292 84 40 chr3 16605304 16605530 -210919048 + MIR SINE MIR 13 248 -14 1558 194 11 3 chr3 16606078 16606362 -210918216 - AluJb SINE Alu -26 286 1 656 181 0 146 chr3 16606967 16607113 -210917465 + L1MB8 LINE L1 6003 6112 -66 1736 133 58 25 chr3 16607113 16607391 -210917187 + AluJb SINE Alu 1 287 -25 656 181 0 146 chr3 16607391 16607449 -210917129 + L1MB8 LINE L1 6112 6177 -1 4350 198 71 21 chr3 16608294 16609331 -210915247 - L1MC3 LINE L1 0 7785 6697 301 306 56 9 chr3 16609731 16609839 -210914739 - L2 LINE L2 -17 3255 3143 1415 276 109 12 chr3 16610455 16611068 -210913510 + L1ME3 LINE L1 5355 6029 -133 21 36 0 0 chr3 16611103 16611131 -210913447 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr3 16611584 16611614 -210912964 + AT_rich Low_complexity Low_complexity 1 30 0 197 307 0 34 chr3 16612182 16612270 -210912308 - MIR SINE MIR -72 190 106 260 185 0 0 chr3 16612276 16612330 -210912248 + L1MC4 LINE L1 6652 6705 -1337 2476 66 0 7 chr3 16612403 16612707 -210911871 - AluY SINE Alu -9 302 1 242 225 0 0 chr3 16612757 16612797 -210911781 + L2 LINE L2 3217 3256 -16 2060 121 7 0 chr3 16612919 16613201 -210911377 - AluSx SINE Alu -28 284 1 2103 106 17 0 chr3 16613333 16613626 -210910952 + AluSx SINE Alu 1 298 -14 1440 50 156 0 chr3 16613936 16614135 -210910443 + MER30 DNA MER1_type 1 230 0 182 300 64 18 chr3 16614184 16614294 -210910284 - MIR SINE MIR -29 233 119 1996 99 20 10 chr3 16614347 16614641 -210909937 - AluSg SINE Alu -13 297 1 323 114 0 0 chr3 16614641 16614685 -210909893 - Alu SINE Alu -264 44 1 1875 122 44 10 chr3 16614686 16614981 -210909597 - AluSx SINE Alu -7 305 1 2048 98 14 4 chr3 16616127 16616403 -210908175 - AluSg SINE Alu -31 279 1 2412 98 0 0 chr3 16616486 16616791 -210907787 - AluSq SINE Alu -8 305 1 324 285 189 65 chr3 16617749 16617977 -210906601 - L1MC/D LINE L1 -2002 5806 5608 2259 112 3 0 chr3 16617977 16618272 -210906306 - AluSx SINE Alu -16 296 1 324 285 189 65 chr3 16618272 16618534 -210906044 - L1MC/D LINE L1 -2200 5608 5255 273 287 167 60 chr3 16618698 16619628 -210904950 - L1MC/D LINE L1 -1162 4984 4155 1753 154 3 11 chr3 16619628 16619914 -210904664 + AluJb SINE Alu 1 284 -28 273 287 167 60 chr3 16619914 16620167 -210904411 - L1MC/D LINE L1 -1991 4155 3930 2393 59 0 13 chr3 16620167 16620470 -210904108 + AluY SINE Alu 1 299 -12 273 287 167 60 chr3 16620470 16620865 -210903713 - L1MC/D LINE L1 -2216 3930 3074 373 225 108 1 chr3 16621104 16621211 -210903367 - FLAM_A SINE Alu -6 127 23 1007 243 62 35 chr3 16621226 16621567 -210903011 - L1ME LINE L1 -305 5816 5467 477 316 15 0 chr3 16622183 16622319 -210902259 + MIR3 SINE MIR 68 205 -3 1970 93 48 110 chr3 16623290 16623646 -210900932 - LTR12 LTR ERV1 0 714 381 333 180 82 82 chr3 16623647 16623769 -210900809 - LTR30 LTR ERV1 -78 716 553 1753 195 215 12 chr3 16623769 16624277 -210900301 - pTR5 LTR ERV1 -433 2005 1395 256 231 0 0 chr3 16624277 16624329 -210900249 - LTR30 LTR ERV1 -670 52 1 1305 194 20 28 chr3 16624329 16624582 -210899996 + AluJb SINE Alu 31 281 -31 26 0 0 0 chr3 16624582 16624608 -210899970 + AT_rich Low_complexity Low_complexity 1 26 0 217 259 35 17 chr3 16625258 16625316 -210899262 - L2 LINE L2 -9 3304 3246 370 218 109 0 chr3 16625379 16625480 -210899098 - MLT1I LTR MaLR -25 384 273 409 301 32 19 chr3 16625640 16625796 -210898782 - MLT1H LTR MaLR -345 204 47 737 176 0 22 chr3 16625847 16625983 -210898595 + FLAM_C SINE Alu 1 133 0 188 316 0 18 chr3 16626033 16626090 -210898488 + MIR SINE MIR 34 89 -119 341 326 105 39 chr3 16626228 16626597 -210897981 - L2 LINE L2 -74 3198 2800 5748 54 6 3 chr3 16626893 16627616 -210896962 - L1PA5 LINE L1 -1 6153 5429 404 312 194 4 chr3 16627623 16627886 -210896692 - L2 LINE L2 -1 3312 3000 2267 83 3 10 chr3 16628201 16628501 -210896077 + AluSc SINE Alu 1 298 -11 2206 158 78 12 chr3 16628534 16628934 -210895644 + MSTB LTR MaLR 1 426 0 2278 91 0 3 chr3 16629407 16629714 -210894864 + AluSc SINE Alu 1 306 -3 485 303 44 50 chr3 16629761 16630101 -210894477 + L1MEc LINE L1 36 373 -6023 3118 210 104 27 chr3 16630340 16631354 -210893224 + L1ME2 LINE L1 5052 6157 -7 720 223 88 0 chr3 16631354 16631502 -210893076 - MER5B DNA MER1_type -17 161 1 185 310 0 0 chr3 16631799 16631857 -210892721 + L2 LINE L2 3254 3311 -2 1837 161 7 0 chr3 16632769 16633079 -210891499 + AluJo SINE Alu 1 312 0 264 222 74 0 chr3 16633901 16633955 -210890623 + L2 LINE L2 3185 3242 -71 488 245 75 0 chr3 16633967 16634126 -210890452 + L1ME4a LINE L1 5736 5906 -215 271 269 15 0 chr3 16634196 16634263 -210890315 + GA-rich Low_complexity Low_complexity 1 68 0 808 169 96 6 chr3 16634469 16634635 -210889943 + AluJ SINE Alu 1 181 -131 918 121 0 27 chr3 16634737 16634886 -210889692 + AluJ SINE Alu 168 312 0 292 139 23 0 chr3 16634900 16634943 -210889635 + AluSg/x SINE Alu 136 179 -123 355 38 57 0 chr3 16634963 16635016 -210889562 + L1MB7 LINE L1 6129 6184 0 455 284 74 62 chr3 16635034 16635193 -210889385 + MIR SINE MIR 1 166 -96 1841 155 3 7 chr3 16635193 16635503 -210889075 - AluSx SINE Alu -3 309 1 455 284 74 62 chr3 16635503 16635586 -210888992 + MIR SINE MIR 166 246 -16 740 141 76 65 chr3 16636372 16636440 -210888138 + MER53 DNA DNA 1 67 -122 2248 100 0 0 chr3 16636440 16636739 -210887839 - AluSg SINE Alu -11 299 1 740 141 76 65 chr3 16636739 16636854 -210887724 + MER53 DNA DNA 67 186 -3 821 223 51 59 chr3 16638325 16638398 -210886180 - MIR SINE MIR -8 254 182 2040 116 0 39 chr3 16638398 16638708 -210885870 - AluSp SINE Alu -15 298 1 821 223 51 59 chr3 16638708 16638890 -210885688 - MIR SINE MIR -80 182 1 391 200 14 0 chr3 16639540 16639610 -210884968 - MIR SINE MIR -113 149 79 538 315 55 14 chr3 16640158 16640377 -210884201 + MIR SINE MIR 21 248 -14 211 279 69 30 chr3 16640833 16640977 -210883601 - MIR3 SINE MIR -47 161 38 2311 83 0 3 chr3 16641094 16641395 -210883183 + AluSg SINE Alu 1 300 -10 405 0 0 0 chr3 16642128 16642173 -210882405 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 256 135 113 chr3 16642582 16642715 -210881863 + MIR3 SINE MIR 2 137 -71 578 269 36 43 chr3 16643063 16643316 -210881262 - L1ME3A LINE L1 -43 6127 5877 234 191 0 0 chr3 16643389 16643436 -210881142 + A-rich Low_complexity Low_complexity 1 47 0 567 135 33 2 chr3 16643669 16643915 -210880663 + AluJo SINE Alu 1 300 -12 200 238 0 0 chr3 16644632 16644674 -210879904 - MIR SINE MIR -140 122 81 4917 55 38 16 chr3 16644795 16645796 -210878782 - MER11A LTR ERVK -87 1179 1 256 296 35 61 chr3 16645848 16645963 -210878615 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16645983 16646324 -210878254 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16646481 16646656 -210877922 + MER20B DNA MER1_type 43 213 -6 2162 93 0 32 chr3 16646722 16647035 -210877543 + AluSg SINE Alu 1 303 -7 214 383 78 23 chr3 16647208 16647336 -210877242 + L2 LINE L2 3136 3270 -2 1444 108 9 14 chr3 16647357 16647579 -210876999 - AluSg/x SINE Alu -4 308 88 664 279 123 5 chr3 16647613 16647817 -210876761 - MIR SINE MIR -15 247 20 595 259 80 22 chr3 16647831 16648055 -210876523 - L3 LINE CR1 -707 870 634 180 337 58 35 chr3 16648065 16648151 -210876427 + L2 LINE L2 3177 3264 -8 610 343 104 24 chr3 16648152 16648487 -210876091 - L3 LINE CR1 -909 668 307 445 218 53 68 chr3 16648488 16648621 -210875957 + MER91B DNA MER1_type 2 132 -58 345 284 42 0 chr3 16648636 16648731 -210875847 + MER91B DNA MER1_type 90 188 -2 2161 90 10 13 chr3 16648809 16649121 -210875457 + AluSq SINE Alu 1 311 -2 552 289 64 60 chr3 16650673 16650922 -210873656 - MIR SINE MIR -6 256 7 1994 115 20 3 chr3 16650976 16651271 -210873307 + AluSx SINE Alu 5 304 -8 1612 185 13 7 chr3 16651864 16652167 -210872411 - AluJo SINE Alu -7 305 1 2261 65 0 14 chr3 16652167 16652457 -210872121 - AluY SINE Alu -15 296 11 180 0 0 0 chr3 16652457 16652477 -210872101 + (T)n Simple_repeat Simple_repeat 1 20 0 1568 136 53 40 chr3 16652489 16652790 -210871788 - AluJb SINE Alu -7 305 1 861 199 46 23 chr3 16652816 16653032 -210871546 - L1ME3 LINE L1 -22 6140 5920 297 266 0 0 chr3 16653087 16653166 -210871412 - L1MC4 LINE L1 -1 8041 7963 1198 246 80 12 chr3 16653182 16653519 -210871059 - L1MC4 LINE L1 -329 7713 7354 1749 141 3 46 chr3 16653852 16654219 -210870359 - AluJb SINE Alu 0 353 1 716 184 8 0 chr3 16654252 16654377 -210870201 - FLAM_C SINE Alu -17 126 1 849 213 102 10 chr3 16655234 16655431 -210869147 + MER58C DNA MER1_type 1 215 0 315 318 18 32 chr3 16655681 16655961 -210868617 - AluSp SINE Alu -88 215 1 2224 201 36 73 chr3 16656187 16656583 -210867995 - L1MC5 LINE L1 -132 7829 7420 1551 175 46 0 chr3 16656583 16656868 -210867710 + AluJo SINE Alu 1 298 -14 2224 201 36 73 chr3 16656868 16656990 -210867588 - L1MC5 LINE L1 -541 7420 7295 1348 211 6 30 chr3 16656990 16657322 -210867256 + MER33 DNA MER1_type 1 324 0 2224 201 36 73 chr3 16657322 16657554 -210867024 - L1MC5 LINE L1 -666 7295 7106 353 282 102 53 chr3 16657575 16657781 -210866797 + L2 LINE L2 3027 3242 -71 358 281 47 31 chr3 16657831 16657959 -210866619 + MIR3 SINE MIR 3 132 -76 325 259 12 0 chr3 16658576 16658661 -210865917 - MIR SINE MIR -114 148 63 350 273 13 0 chr3 16658677 16658754 -210865824 - L2 LINE L2 0 3272 3195 2565 86 28 25 chr3 16658871 16659233 -210865345 - THE1B LTR MaLR 0 364 2 341 241 125 0 chr3 16659437 16659549 -210865029 - L2 LINE L2 -3 3310 3185 347 274 28 57 chr3 16659564 16659670 -210864908 + MER91C DNA MER1_type 36 138 -2 458 210 68 56 chr3 16659674 16659836 -210864742 - L2 LINE L2 -123 3190 3027 246 206 206 9 chr3 16659837 16659944 -210864634 - LTR33 LTR ERVL -1 520 393 492 242 57 41 chr3 16660032 16660226 -210864352 - LTR33 LTR ERVL -308 213 17 806 265 131 26 chr3 16660424 16660886 -210863692 - L2 LINE L2 -316 2997 2479 3040 112 0 18 chr3 16660886 16661322 -210863256 + MSTC LTR MaLR 1 428 0 806 265 131 26 chr3 16661322 16661351 -210863227 - L2 LINE L2 -834 2479 2454 597 198 55 93 chr3 16661506 16661763 -210862815 + L1MC5 LINE L1 7670 7916 -45 2065 99 0 3 chr3 16661791 16662128 -210862450 + AluSx SINE Alu 1 336 0 222 222 37 19 chr3 16662157 16662211 -210862367 + MIR3 SINE MIR 150 204 -4 4334 153 27 10 chr3 16662279 16663046 -210861532 - L1MC1 LINE L1 -9 6324 5545 2692 221 25 0 chr3 16663056 16663661 -210860917 - L1MC1 LINE L1 -1010 5136 4517 816 305 111 32 chr3 16663845 16664286 -210860292 - L2 LINE L2 0 3272 2792 439 323 120 5 chr3 16664318 16664510 -210860068 - MIR SINE MIR -28 234 21 894 230 31 5 chr3 16665061 16665257 -210859321 + MIR SINE MIR 31 231 -31 2221 90 7 3 chr3 16665343 16665642 -210858936 - AluSg SINE Alu -10 300 1 2093 108 0 10 chr3 16665798 16666094 -210858484 - AluSx SINE Alu -14 298 6 392 274 222 19 chr3 16666234 16666452 -210858126 - MIR SINE MIR -1 261 5 222 291 68 86 chr3 16666434 16666888 -210857690 - L2 LINE L2 -20 3252 2807 * 354 310 16 82 chr3 16666923 16666964 -210857614 + MIR SINE MIR 12 54 -208 2276 63 3 20 chr3 16666964 16667266 -210857312 + AluY SINE Alu 1 297 -14 354 310 16 82 chr3 16667266 16667408 -210857170 + MIR SINE MIR 54 183 -79 1909 148 7 3 chr3 16667824 16668129 -210856449 - AluSx SINE Alu -6 306 1 469 311 106 18 chr3 16668204 16668535 -210856043 - L1ME4a LINE L1 -75 6046 5687 361 245 93 7 chr3 16668545 16668684 -210855894 - L1ME4a LINE L1 -471 5650 5500 1522 173 14 51 chr3 16668784 16669079 -210855499 - AluJo SINE Alu -23 289 6 782 216 37 32 chr3 16669237 16669427 -210855151 - MLT1A2 LTR MaLR 0 374 184 207 175 25 0 chr3 16669459 16669499 -210855079 - MIR SINE MIR -109 153 113 375 293 186 30 chr3 16669673 16669787 -210854791 + MIR SINE MIR 14 109 -153 1788 145 7 13 chr3 16669787 16670090 -210854488 + AluJb SINE Alu 1 301 -11 375 293 186 30 chr3 16670090 16670178 -210854400 + MIR SINE MIR 109 248 -14 1830 165 0 3 chr3 16670187 16670490 -210854088 + AluJb SINE Alu 1 302 -10 684 287 120 57 chr3 16670620 16670986 -210853592 - L2 LINE L2 0 3313 2925 321 241 131 44 chr3 16671532 16671669 -210852909 + MER5A DNA MER1_type 3 151 -38 194 235 0 0 chr3 16672402 16672436 -210852142 + MIR SINE MIR 3 36 -226 1339 250 120 28 chr3 16672443 16672972 -210851606 + L2 LINE L2 2741 3313 0 312 167 61 15 chr3 16672992 16673058 -210851520 + MIR SINE MIR 56 124 -138 1134 167 144 121 chr3 16673105 16673453 -210851125 - MLT1A1 LTR MaLR -6 359 4 186 281 18 0 chr3 16673457 16673514 -210851064 + MIR SINE MIR 199 256 -6 243 0 0 0 chr3 16674276 16674303 -210850275 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 386 278 89 39 chr3 16674438 16674618 -210849960 + MER117 DNA MER1_type 3 191 -6 2140 123 3 0 chr3 16675107 16675417 -210849161 - AluSx SINE Alu -1 311 1 364 223 190 58 chr3 16675481 16675602 -210848976 + MER5A DNA MER1_type 32 168 -21 238 360 117 14 chr3 16676112 16676326 -210848252 - L2 LINE L2 -508 2806 2571 366 217 43 0 chr3 16677034 16677126 -210847452 + MER112 DNA MER1_type 158 253 -7 249 250 0 0 chr3 16677529 16677589 -210846989 - L1ME LINE L1 -453 5668 5609 1788 160 14 0 chr3 16677589 16677877 -210846701 + AluJo SINE Alu 1 292 -20 832 246 14 19 chr3 16677902 16678113 -210846465 + MER63A DNA MER1_type 1 210 0 317 233 110 0 chr3 16678941 16679014 -210845564 - MIR SINE MIR -101 107 27 24 32 0 0 chr3 16679014 16679045 -210845533 + AT_rich Low_complexity Low_complexity 1 31 0 196 293 17 0 chr3 16679535 16679593 -210844985 - MIR3 SINE MIR -39 169 111 2091 144 35 9 chr3 16679679 16680018 -210844560 + MER7A DNA MER2_type 1 346 0 2219 94 3 0 chr3 16680162 16680459 -210844119 + AluSp SINE Alu 1 298 -15 336 226 12 29 chr3 16680461 16680564 -210844014 - MIR SINE MIR -64 144 45 2317 90 0 0 chr3 16681060 16681371 -210843207 - AluY SINE Alu 0 311 1 249 283 170 28 chr3 16681893 16681999 -210842579 - L2 LINE L2 -2 3270 3150 234 303 23 80 chr3 16682176 16682351 -210842227 - MER5A DNA MER1_type -18 171 7 850 205 0 0 chr3 16682382 16682538 -210842040 + MER5B DNA MER1_type 21 176 -2 510 210 150 54 chr3 16682562 16682729 -210841849 - MER5A DNA MER1_type 0 189 7 272 213 13 80 chr3 16682853 16682928 -210841650 - MER5A DNA MER1_type -22 167 98 425 240 109 23 chr3 16682929 16683104 -210841474 - MIR SINE MIR -4 258 69 370 308 49 11 chr3 16683423 16683578 -210841000 + L1ME4a LINE L1 5731 5902 -219 1595 142 0 54 chr3 16683578 16683894 -210840684 + AluSx SINE Alu 1 299 -13 370 308 49 11 chr3 16683894 16684001 -210840577 + L1ME4a LINE L1 5902 6003 -118 249 244 162 41 chr3 16684760 16684905 -210839673 + MIR SINE MIR 35 194 -63 306 314 177 24 chr3 16685299 16685547 -210839031 - L3 LINE CR1 -89 1488 1203 469 234 63 18 chr3 16685567 16685678 -210838900 + L2 LINE L2 3198 3313 0 323 248 119 10 chr3 16685680 16685781 -210838797 - L2 LINE L2 -12 3301 3190 377 322 125 56 chr3 16686221 16686612 -210837966 - L2 LINE L2 -11 3261 2844 481 209 128 36 chr3 16686644 16686859 -210837719 + MIR SINE MIR 6 260 -2 490 301 100 18 chr3 16686902 16687181 -210837397 - L2 LINE L2 -553 2761 2460 2167 78 0 33 chr3 16687363 16687669 -210836909 - AluY SINE Alu -7 304 9 208 293 121 36 chr3 16687867 16688007 -210836571 - L3 LINE CR1 -408 1169 1018 400 266 50 14 chr3 16688521 16688660 -210835918 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16689117 16689201 -210835377 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16689825 16689986 -210834592 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16690137 16690162 -210834416 + (CA)n Simple_repeat Simple_repeat 2 26 0 1160 224 14 18 chr3 16690162 16690439 -210834139 - AluSg SINE Alu -17 293 18 281 333 64 30 chr3 16690441 16690582 -210833996 - MIR SINE MIR -66 142 1 506 277 70 76 chr3 16690605 16690948 -210833630 + L2 LINE L2 2921 3261 -11 1134 247 125 23 chr3 16691071 16691603 -210832975 + MLT1L LTR MaLR 1 612 -3 340 335 178 4 chr3 16691695 16691925 -210832653 + L2 LINE L2 3002 3271 -1 341 250 0 0 chr3 16692014 16692082 -210832496 + MIR3 SINE MIR 93 160 -48 505 289 232 42 chr3 16692768 16693901 -210830677 - L2 LINE L2 -642 2672 1325 217 286 121 36 chr3 16694024 16694164 -210830414 + L3 LINE CR1 1018 1169 -408 2142 82 0 33 chr3 16694362 16694668 -210829910 + AluY SINE Alu 9 304 -7 490 301 100 18 chr3 16694850 16695129 -210829449 + L2 LINE L2 2460 2761 -553 481 209 128 36 chr3 16695172 16695387 -210829191 - MIR SINE MIR -2 260 6 628 301 119 39 chr3 16695419 16695805 -210828773 + L2 LINE L2 2844 3260 -12 186 281 157 11 chr3 16696076 16696165 -210828413 + L2 LINE L2 2998 3099 -214 323 248 119 10 chr3 16696246 16696347 -210828231 + L2 LINE L2 3190 3301 -12 469 234 63 18 chr3 16696349 16696460 -210828118 - L2 LINE L2 0 3313 3198 306 314 177 24 chr3 16696480 16696728 -210827850 + L3 LINE CR1 1203 1488 -89 267 245 185 40 chr3 16697122 16697273 -210827305 - MIR SINE MIR -68 194 22 190 205 26 0 chr3 16698128 16698167 -210826411 - L2 LINE L2 -39 3274 3235 296 284 181 16 chr3 16698270 16698397 -210826181 - MIR SINE MIR -36 226 79 2675 16 0 3 chr3 16698493 16698805 -210825773 + AluYa5 SINE Alu 1 311 0 1433 231 71 37 chr3 16698851 16699341 -210825237 + MLT1E2 LTR MaLR 1 505 0 291 255 2 0 chr3 16699341 16699425 -210825153 - MIR SINE MIR -80 128 43 463 264 76 100 chr3 16699528 16699778 -210824800 + MIR SINE MIR 2 245 -17 291 235 183 11 chr3 16699848 16700001 -210824577 - MIR SINE MIR -63 145 4 182 306 129 20 chr3 16700185 16700332 -210824246 - L2 LINE L2 -5 3267 3105 880 242 175 25 chr3 16700465 16701025 -210823553 - L2 LINE L2 -166 3147 2501 241 322 22 11 chr3 16701346 16701436 -210823142 - L2 LINE L2 -9 3263 3173 4162 33 19 0 chr3 16701483 16701964 -210822614 - LTR2B LTR ERV1 0 490 1 592 250 79 7 chr3 16702303 16702455 -210822123 + MER5B DNA MER1_type 15 177 -1 294 29 0 0 chr3 16702765 16702800 -210821778 + (GA)n Simple_repeat Simple_repeat 2 36 0 318 257 43 0 chr3 16703033 16703103 -210821475 - LTR16B LTR ERVL -6 458 386 321 276 13 0 chr3 16703121 16703197 -210821381 - L2 LINE L2 -33 3239 3163 522 246 23 0 chr3 16703265 16703395 -210821183 + MER94 DNA DNA 1 133 -1 196 375 45 0 chr3 16703406 16703494 -210821084 - L2 LINE L2 -199 3073 2982 244 128 85 0 chr3 16703818 16703865 -210820713 - L1MB3 LINE L1 -1 6182 6132 2239 85 0 3 chr3 16703865 16704160 -210820418 - AluSg SINE Alu -14 296 3 1812 243 53 13 chr3 16704160 16704629 -210819949 + L1ME1 LINE L1 5595 6082 -84 4125 234 49 92 chr3 16704660 16706048 -210818530 + L1M4 LINE L1 3047 4493 -1653 1534 176 10 23 chr3 16706048 16706349 -210818229 - AluJo SINE Alu -15 297 1 4125 234 49 92 chr3 16706349 16706422 -210818156 + L1M4 LINE L1 4493 4568 -1578 329 43 22 0 chr3 16706422 16706468 -210818110 - MADE1 DNA Mariner -1 79 33 233 185 0 19 chr3 16706477 16706531 -210818047 + HSMAR1 DNA Mariner 1235 1287 0 4125 234 49 92 chr3 16706531 16707051 -210817527 + L1M4 LINE L1 4576 5047 -1099 3586 214 43 8 chr3 16707044 16708000 -210816578 + L1 LINE L1 2346 3334 -2812 * 241 200 0 17 chr3 16708011 16708071 -210816507 + L1 LINE L1 3642 3700 -2446 * 4663 154 82 35 chr3 16708043 16708578 -210816000 + L1MA8 LINE L1 3906 4414 -1732 849 213 6 12 chr3 16708578 16708738 -210815840 + FAM SINE Alu 1 159 -16 4663 154 82 35 chr3 16708738 16709236 -210815342 + L1MA8 LINE L1 4414 4988 -1158 1010 193 54 40 chr3 16709279 16709597 -210814981 - MLT2B3 LTR ERVL 0 554 228 625 71 0 0 chr3 16709594 16709678 -210814900 - MLT2A2 LTR ERVL -369 84 1 * 4459 145 17 36 chr3 16709679 16709911 -210814667 + L1MA8 LINE L1 5096 5331 -960 2228 100 0 13 chr3 16709911 16710221 -210814357 + AluY SINE Alu 1 306 -5 4459 145 17 36 chr3 16710221 16710510 -210814068 + L1MA8 LINE L1 5331 5624 -667 1824 134 0 10 chr3 16710510 16710830 -210813748 + AluY SINE Alu 1 311 0 4459 145 17 36 chr3 16710830 16711176 -210813402 + L1MA8 LINE L1 5624 5951 -340 2048 113 16 19 chr3 16711176 16711487 -210813091 + AluSg SINE Alu 1 310 0 4459 145 17 36 chr3 16711487 16711567 -210813011 + L1MA8 LINE L1 5951 6031 -260 1779 204 16 64 chr3 16711566 16712189 -210812389 + L1 LINE L1 3684 4242 -1904 * 605 168 16 0 chr3 16712195 16712320 -210812258 + GA-rich Low_complexity Low_complexity 2 128 0 360 155 0 0 chr3 16712750 16712821 -210811757 + T-rich Low_complexity Low_complexity 1 71 0 980 242 92 84 chr3 16713297 16713681 -210810897 + L2 LINE L2 2649 3044 -269 1991 132 0 3 chr3 16713681 16713976 -210810602 - AluSg SINE Alu -16 294 1 980 242 92 84 chr3 16713976 16714244 -210810334 + L2 LINE L2 3044 3308 -5 395 274 32 24 chr3 16714272 16714396 -210810182 - MIR SINE MIR -66 142 18 257 295 13 26 chr3 16714468 16714546 -210810032 + MIR3 SINE MIR 15 91 -117 253 284 25 12 chr3 16714652 16714733 -210809845 + MIR SINE MIR 2 83 -179 2229 202 81 16 chr3 16714778 16715284 -210809294 + MLT1F LTR MaLR 4 542 0 461 231 0 28 chr3 16715335 16715443 -210809135 - MIR SINE MIR -71 191 87 298 247 43 21 chr3 16715833 16715926 -210808652 - MIR SINE MIR -120 142 48 487 308 91 0 chr3 16716446 16716589 -210807989 + MER91A DNA MER1_type 1 156 -40 1671 191 112 32 chr3 16716591 16717030 -210807548 - L1MB7 LINE L1 0 6184 5711 2148 105 0 0 chr3 16717030 16717325 -210807253 + AluSx SINE Alu 1 295 -17 447 239 183 7 chr3 16717484 16717626 -210806952 + L2 LINE L2 2591 2757 -557 2008 126 0 3 chr3 16717710 16718012 -210806566 - AluSx SINE Alu -11 301 1 307 322 43 54 chr3 16718471 16718729 -210805849 + L2 LINE L2 2852 3106 -166 1033 101 7 0 chr3 16718767 16718916 -210805662 + AluSg/x SINE Alu 137 286 -26 563 231 56 0 chr3 16719328 16719471 -210805107 + L1 LINE L1 4134 4284 -1862 388 280 86 23 chr3 16719718 16719893 -210804685 - MIR SINE MIR -49 213 28 2039 112 3 3 chr3 16719895 16720198 -210804380 - AluSx SINE Alu -9 303 1 851 98 8 0 chr3 16720199 16720322 -210804256 + MER41A LTR ERV1 431 554 0 290 217 152 0 chr3 16720330 16720422 -210804156 - L1ME3A LINE L1 -217 5953 5848 264 240 0 0 chr3 16720600 16720650 -210803928 + MER92B LTR ERV1 1 50 -586 2073 114 27 0 chr3 16720668 16720941 -210803637 + AluSx SINE Alu 1 265 -47 300 27 0 0 chr3 16720941 16720978 -210803600 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 360 0 0 0 chr3 16720977 16721017 -210803561 + (CA)n Simple_repeat Simple_repeat 1 40 0 2073 114 27 0 chr3 16720978 16721041 -210803537 + AluSx SINE Alu 265 306 -6 591 144 48 0 chr3 16721041 16721145 -210803433 - MER41B LTR ERV1 -12 623 515 2056 117 7 3 chr3 16721145 16721453 -210803125 + AluSx SINE Alu 1 309 -3 583 144 0 41 chr3 16721453 16721550 -210803028 + AluSg/x SINE Alu 108 200 -112 923 101 7 0 chr3 16721559 16721698 -210802880 + AluSg/x SINE Alu 171 310 0 3223 151 8 6 chr3 16721699 16722215 -210802363 - MER41B LTR ERV1 -118 517 1 2207 110 0 3 chr3 16722238 16722548 -210802030 + AluSq SINE Alu 1 309 -4 2414 81 0 0 chr3 16722548 16722857 -210801721 + AluY SINE Alu 1 309 -2 1878 153 0 6 chr3 16722862 16723175 -210801403 + AluJo SINE Alu 2 312 0 1997 219 46 40 chr3 16723177 16723461 -210801117 + MER92B LTR ERV1 55 345 -291 1241 179 88 107 chr3 16723461 16723918 -210800660 - LTR7 LTR ERV1 -2 448 1 1997 219 46 40 chr3 16723918 16724154 -210800424 + MER92B LTR ERV1 345 578 -58 2692 13 0 3 chr3 16724196 16724507 -210800071 - AluYa5 SINE Alu -1 310 1 296 284 181 16 chr3 16724603 16724730 -210799848 + MIR SINE MIR 79 226 -36 190 205 26 0 chr3 16724833 16724872 -210799706 + L2 LINE L2 3235 3274 -39 2424 104 0 3 chr3 16726425 16726733 -210797845 - AluSq SINE Alu -2 311 5 1331 133 0 33 chr3 16726807 16727017 -210797561 - AluJo SINE Alu -109 203 1 181 291 89 13 chr3 16727552 16727631 -210796947 + MIR3 SINE MIR 5 89 -119 249 197 0 0 chr3 16727631 16727697 -210796881 + (TG)n Simple_repeat Simple_repeat 2 67 0 443 267 10 0 chr3 16727836 16727937 -210796641 - MIR SINE MIR -107 155 54 8555 217 9 34 chr3 16728347 16729754 -210794824 - LTR7-int LTR ERV1 0 6649 5304 2475 65 0 26 chr3 16729754 16730063 -210794515 + AluY SINE Alu 1 301 -10 8555 217 9 34 chr3 16730063 16730657 -210793921 - LTR7-int LTR ERV1 -1345 5304 4697 2284 60 0 57 chr3 16730695 16730994 -210793584 - AluY SINE Alu -27 284 3 441 136 0 0 chr3 16730995 16731061 -210793517 - MER5A DNA MER1_type -112 77 12 832 83 19 0 chr3 16731306 16731414 -210793164 + AluSp/q SINE Alu 189 298 -15 304 323 184 14 chr3 16731512 16731794 -210792784 - L2 LINE L2 -337 2977 2648 1691 182 40 3 chr3 16782558 16782882 -210741696 - MER1B DNA MER1_type 0 337 2 391 293 32 32 chr3 16782963 16783086 -210741492 - MIR3 SINE MIR -41 167 45 2159 82 0 0 chr3 16783087 16783366 -210741212 + AluY SINE Alu 1 279 -32 550 281 74 48 chr3 16783573 16783804 -210740774 - L2 LINE L2 -779 2535 2299 187 327 19 93 chr3 16783804 16783911 -210740667 - L2 LINE L2 -1987 1327 1229 375 358 64 5 chr3 16784218 16784405 -210740173 - MIR SINE MIR -10 252 55 1195 169 0 0 chr3 16784663 16784870 -210739708 - AluSg/x SINE Alu -2 310 104 731 164 0 0 chr3 16785001 16785123 -210739455 + AluSg/x SINE Alu 184 305 -7 1601 176 64 7 chr3 16785591 16785886 -210738692 - AluJb SINE Alu 0 312 1 1581 219 70 10 chr3 16786170 16786558 -210738020 - Tigger1 DNA MER2_type -2007 411 1 11215 53 7 50 chr3 16788032 16789774 -210734804 - L1P LINE L1 -2265 3881 2215 3543 174 79 45 chr3 16790164 16791076 -210733502 - L1MB3 LINE L1 -10 6173 5215 2378 85 13 0 chr3 16791076 16791381 -210733197 + AluSc SINE Alu 1 309 0 3543 174 79 45 chr3 16791381 16791545 -210733033 - L1MB3 LINE L1 -968 5215 5058 416 109 118 8 chr3 16791688 16791807 -210732771 - THE1B-int LTR MaLR -1448 132 1 2064 155 25 19 chr3 16791807 16792169 -210732409 - THE1B LTR MaLR 0 364 1 276 152 22 0 chr3 16792169 16792215 -210732363 - Alu SINE Alu -261 47 1 3013 222 27 20 chr3 16792216 16792477 -210732101 - L1MCa LINE L1 -750 5894 5636 2058 173 34 29 chr3 16792477 16792893 -210731685 + MER47B DNA MER2_type 1 418 0 3013 222 27 20 chr3 16792893 16793515 -210731063 - L1MCa LINE L1 -1008 5636 5005 1861 196 63 68 chr3 16794200 16794834 -210729744 - L1MC4 LINE L1 -8 8034 7404 722 195 27 0 chr3 16795088 16795237 -210729341 - AluSx SINE Alu -159 153 1 1555 245 35 35 chr3 16795272 16795807 -210728771 - L1MCa LINE L1 -1843 4801 4267 2430 154 61 11 chr3 16795807 16796267 -210728311 - Tigger3b DNA MER2_type 0 1231 749 309 232 26 15 chr3 16796532 16796624 -210727954 - MER5A DNA MER1_type -73 116 14 399 127 0 0 chr3 16797214 16797277 -210727301 + (CA)n Simple_repeat Simple_repeat 1 63 0 408 260 99 28 chr3 16797441 16797622 -210726956 + L1ME1 LINE L1 5968 6161 -5 180 0 0 0 chr3 16798928 16798948 -210725630 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 242 308 58 10 chr3 16799621 16799725 -210724853 + MIR3 SINE MIR 54 162 -46 249 261 23 57 chr3 16800863 16800951 -210723627 - MIR SINE MIR -79 183 99 212 158 0 26 chr3 16801279 16801317 -210723261 + CT-rich Low_complexity Low_complexity 4 40 0 2083 91 33 0 chr3 16801723 16802027 -210722551 - AluSx SINE Alu 0 313 1 647 232 100 0 chr3 16802481 16802539 -210722039 - L1MC4 LINE L1 -1481 6561 6510 1730 99 0 21 chr3 16802539 16802781 -210721797 - AluSg SINE Alu -73 237 1 647 232 100 0 chr3 16802781 16802912 -210721666 - L1MC4 LINE L1 -1532 6510 6353 646 206 19 26 chr3 16802917 16803072 -210721506 - L1ME2 LINE L1 -13 6151 5998 1235 176 59 29 chr3 16803711 16803983 -210720595 + AluJb SINE Alu 1 280 -32 3187 123 97 19 chr3 16804576 16805194 -210719384 - Tigger3b DNA MER2_type -565 666 1 3698 236 70 24 chr3 16805194 16806869 -210717709 - L1MCa LINE L1 -2376 4268 2527 35 0 0 0 chr3 16806875 16806910 -210717668 + AT_rich Low_complexity Low_complexity 1 35 0 1398 127 100 27 chr3 16807030 16807330 -210717248 - THE1C LTR MaLR -53 322 1 2062 127 0 7 chr3 16807536 16807836 -210716742 + AluSx SINE Alu 1 298 -14 868 161 75 11 chr3 16808835 16809021 -210715557 - Tigger1 DNA MER2_type 0 2418 2221 273 278 56 0 chr3 16809591 16809681 -210714897 + MARNA DNA Mariner 250 344 -242 185 206 88 29 chr3 16809981 16810049 -210714529 + MIR SINE MIR 82 153 -109 1698 184 35 70 chr3 16810091 16810246 -210714332 + L1MB8 LINE L1 5119 5278 -906 738 197 0 0 chr3 16810246 16810378 -210714200 + FLAM_A SINE Alu 1 132 -1 1698 184 35 70 chr3 16810378 16810772 -210713806 + L1MB8 LINE L1 5278 5654 -530 332 167 0 0 chr3 16810772 16810826 -210713752 + MER66A LTR ERV1 287 340 -138 1943 160 61 40 chr3 16810855 16811379 -210713199 + L1MB8 LINE L1 5644 6178 0 890 132 44 0 chr3 16812227 16812386 -210712192 + MER41E LTR ERV1 10 175 -337 271 137 59 0 chr3 16812385 16812436 -210712142 + AluJb SINE Alu 79 132 -170 * 21 71 0 0 chr3 16812524 16812566 -210712012 + AT_rich Low_complexity Low_complexity 1 42 0 289 289 0 0 chr3 16812892 16812996 -210711582 - L1MB8 LINE L1 -3 6175 6072 269 185 77 0 chr3 16813008 16813073 -210711505 - L2 LINE L2 -1422 1892 1823 2078 123 3 10 chr3 16813893 16814202 -210710376 - AluSx SINE Alu -5 307 1 548 273 59 84 chr3 16814225 16814383 -210710195 - L1MCa LINE L1 -5772 770 623 2706 94 11 0 chr3 16814383 16814743 -210709835 - THE1B LTR MaLR 0 364 1 548 273 59 84 chr3 16814743 16814906 -210709672 - L1MCa LINE L1 -5919 623 457 2024 100 0 0 chr3 16815179 16815439 -210709139 - AluSc SINE Alu -49 260 1 389 287 119 96 chr3 16815570 16815964 -210708614 - L2 LINE L2 0 3272 2870 221 264 53 125 chr3 16816159 16816367 -210708211 + MIR3 SINE MIR 8 200 -8 215 259 148 0 chr3 16817026 16817107 -210707471 + MIR SINE MIR 59 151 -111 2136 99 0 0 chr3 16817798 16818070 -210706508 + AluY SINE Alu 1 272 -39 325 266 107 17 chr3 16818553 16818730 -210705848 - L1MEc LINE L1 -3642 2573 2381 240 203 17 0 chr3 16818881 16818940 -210705638 - L1MEc LINE L1 -4118 2278 2219 1871 117 0 18 chr3 16819188 16819462 -210705116 - AluSx SINE Alu 0 312 44 1721 171 39 3 chr3 16819549 16819835 -210704743 - AluJo SINE Alu -16 296 1 2009 139 3 13 chr3 16820093 16820394 -210704184 - AluSg1 SINE Alu -11 298 1 2413 87 3 7 chr3 16820508 16820818 -210703760 - AluSx SINE Alu -3 309 1 835 179 0 8 chr3 16820819 16820953 -210703625 - AluJo SINE Alu -177 135 3 247 213 147 13 chr3 16821147 16821222 -210703356 + MIR SINE MIR 95 179 -83 963 186 16 11 chr3 16822347 16822535 -210702043 - MER5A DNA MER1_type 0 189 1 452 254 33 50 chr3 16822991 16823172 -210701406 + Charlie8 DNA MER1_type 97 274 -2143 2055 123 24 0 chr3 16823713 16824005 -210700573 + AluSx SINE Alu 2 300 -12 242 54 0 27 chr3 16824005 16824042 -210700536 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1994 155 0 0 chr3 16824222 16824518 -210700060 - AluSx SINE Alu -16 296 1 561 196 0 0 chr3 16824743 16824835 -210699743 - FRAM SINE Alu -40 136 45 641 191 203 59 chr3 16824971 16825207 -210699371 - LOR1b LTR ERV1 -191 270 1 4495 186 52 97 chr3 16825207 16826792 -210697786 - L1 LINE L1 -1252 4894 3382 216 0 0 0 chr3 16826859 16826883 -210697695 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1456 141 70 21 chr3 16827214 16827498 -210697080 + L1MB7 LINE L1 5838 6135 -49 1881 116 4 4 chr3 16827539 16827797 -210696781 - AluSx SINE Alu -54 258 1 327 89 36 0 chr3 16827797 16827853 -210696725 + L1MB7 LINE L1 6127 6184 0 335 308 89 77 chr3 16827958 16828293 -210696285 + L2 LINE L2 2904 3256 -16 27 29 0 0 chr3 16828576 16828610 -210695968 + AT_rich Low_complexity Low_complexity 1 34 0 2029 135 10 3 chr3 16828947 16829250 -210695328 - AluSx SINE Alu -7 305 1 551 302 40 36 chr3 16829305 16829410 -210695168 - Charlie8 DNA MER1_type -117 224 121 2344 86 0 0 chr3 16829410 16829702 -210694876 - AluSx SINE Alu -20 292 1 551 302 40 36 chr3 16829702 16829818 -210694760 - Charlie8 DNA MER1_type -220 121 2 1446 182 29 42 chr3 16830897 16831205 -210693373 + AluJo SINE Alu 3 306 -6 2205 206 203 7 chr3 16831206 16831530 -210693048 + L1MB4 LINE L1 5210 5469 -711 2011 130 3 20 chr3 16831530 16831830 -210692748 - AluSg SINE Alu -15 295 1 2205 206 203 7 chr3 16831830 16832175 -210692403 + L1MB4 LINE L1 5469 6007 -173 217 214 0 0 chr3 16832904 16832946 -210691632 - MIR SINE MIR -140 122 81 537 234 82 22 chr3 16833392 16833576 -210691002 + MIR SINE MIR 62 256 -6 388 301 113 38 chr3 16834351 16834564 -210690014 + MIR SINE MIR 27 255 -7 199 241 28 56 chr3 16834996 16835104 -210689474 + MER5B DNA MER1_type 1 105 -73 2047 86 4 0 chr3 16835371 16835628 -210688950 - AluY SINE Alu -53 258 1 13656 118 43 9 chr3 16835630 16837311 -210687267 - Tigger1 DNA MER2_type -188 2230 462 2351 101 0 19 chr3 16837311 16837629 -210686949 - AluSx SINE Alu 0 312 1 13656 118 43 9 chr3 16837629 16838044 -210686534 - Tigger1 DNA MER2_type -1956 462 63 38 96 0 0 chr3 16838837 16838952 -210685626 + AT_rich Low_complexity Low_complexity 1 115 0 704 175 18 0 chr3 16838952 16839066 -210685512 + AluJb SINE Alu 185 300 -12 74 23 0 0 chr3 16839149 16839237 -210685341 + AT_rich Low_complexity Low_complexity 1 88 0 311 302 26 69 chr3 16839357 16839546 -210685032 - L1MC4a LINE L1 -1834 5974 5794 1735 170 35 7 chr3 16839546 16839834 -210684744 - AluJo SINE Alu -16 296 1 330 304 36 9 chr3 16839834 16839946 -210684632 - L1MC4a LINE L1 -2094 5714 5600 1835 188 149 80 chr3 16840227 16840862 -210683716 - L1ME3A LINE L1 0 6170 5393 796 141 76 65 chr3 16841309 16841377 -210683201 + MER53 DNA DNA 1 67 -122 2358 100 0 0 chr3 16841377 16841676 -210682902 - AluSg SINE Alu -11 299 1 796 141 76 65 chr3 16841676 16841791 -210682787 + MER53 DNA DNA 67 186 -3 796 223 51 59 chr3 16843262 16843335 -210681243 - MIR SINE MIR -8 254 182 1636 171 3 42 chr3 16843335 16843645 -210680933 - AluSp SINE Alu -15 298 1 796 223 51 59 chr3 16843645 16843827 -210680751 - MIR SINE MIR -80 182 1 351 214 14 0 chr3 16844477 16844547 -210680031 - MIR SINE MIR -113 149 79 513 308 56 14 chr3 16845100 16845314 -210679264 + MIR SINE MIR 26 248 -14 202 272 61 23 chr3 16845791 16845914 -210678664 - MIR3 SINE MIR -47 161 38 2425 83 0 3 chr3 16846031 16846332 -210678246 + AluSg SINE Alu 1 300 -10 387 0 0 0 chr3 16847066 16847109 -210677469 + (TG)n Simple_repeat Simple_repeat 2 44 0 202 256 135 113 chr3 16847517 16847650 -210676928 + MIR3 SINE MIR 2 137 -71 584 273 36 43 chr3 16847997 16848250 -210676328 - L1ME3A LINE L1 -43 6127 5877 255 170 0 0 chr3 16848323 16848370 -210676208 + A-rich Low_complexity Low_complexity 1 47 0 423 184 35 15 chr3 16848604 16848834 -210675744 + AluJo SINE Alu 2 282 -30 1998 107 48 10 chr3 16849839 16850128 -210674450 - AluSx SINE Alu -12 300 1 2308 104 0 7 chr3 16850212 16850521 -210674057 + AluSx SINE Alu 1 307 -5 241 298 71 85 chr3 16850828 16850969 -210673609 + MIR3 SINE MIR 16 154 -54 24 0 0 0 chr3 16854247 16854271 -210670307 + AT_rich Low_complexity Low_complexity 1 24 0 1926 140 4 0 chr3 16855416 16855694 -210668884 + AluSg SINE Alu 1 279 -31 182 103 0 51 chr3 16855721 16855760 -210668818 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 1713 163 29 38 chr3 16855774 16856087 -210668491 + AluJb SINE Alu 1 310 -2 545 199 46 23 chr3 16856172 16856365 -210668213 + L1M4 LINE L1 2 254 -6288 632 256 63 43 chr3 16856469 16856770 -210667808 - L1M4 LINE L1 -3204 2942 2636 2494 46 0 16 chr3 16856891 16857196 -210667382 - AluYa5 SINE Alu -11 300 1 1243 124 43 74 chr3 16857435 16857758 -210666820 + AluSq SINE Alu 1 313 0 21 0 0 0 chr3 16857949 16857970 -210666608 + AT_rich Low_complexity Low_complexity 1 21 0 323 264 0 0 chr3 16858199 16858271 -210666307 - MARNA DNA Mariner -425 161 90 267 335 7 20 chr3 16859093 16859245 -210665333 - MARNA DNA Mariner -165 421 272 305 219 31 0 chr3 16859420 16859484 -210665094 + MIR SINE MIR 66 131 -131 225 0 100 0 chr3 16860974 16861014 -210663564 + A-rich Low_complexity Low_complexity 2 45 0 198 103 0 0 chr3 16861907 16861936 -210662642 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 2321 109 0 0 chr3 16862390 16862702 -210661876 - AluSx SINE Alu 0 312 1 258 246 184 0 chr3 16863158 16863272 -210661306 - MIR SINE MIR -1 261 127 2853 0 0 0 chr3 16863657 16863958 -210660620 - AluYa5 SINE Alu -10 301 1 2359 109 3 0 chr3 16864013 16864325 -210660253 - AluSq SINE Alu 0 313 1 1977 143 3 13 chr3 16864583 16864884 -210659694 - AluSg1 SINE Alu -11 298 1 2396 88 3 7 chr3 16864998 16865306 -210659272 - AluSx SINE Alu -5 307 1 819 179 0 8 chr3 16865307 16865441 -210659137 - AluJo SINE Alu -177 135 3 230 222 153 14 chr3 16865638 16865710 -210658868 + MIR SINE MIR 98 179 -83 1646 162 0 70 chr3 16865959 16866287 -210658291 + AluJo SINE Alu 1 305 -7 1836 157 3 7 chr3 16866718 16867012 -210657566 - AluJb SINE Alu -4 308 16 545 253 154 18 chr3 16867366 16867639 -210656939 - L1ME3A LINE L1 -208 5962 5653 773 202 50 14 chr3 16867641 16867854 -210656724 - MER106B DNA MER1_type -2 234 2 634 244 72 62 chr3 16867877 16867911 -210656667 - L1ME3A LINE L1 -530 5634 5602 5387 130 53 5 chr3 16867911 16869035 -210655543 + L1PA13 LINE L1 4996 6163 0 634 244 72 62 chr3 16869035 16869291 -210655287 - L1ME3A LINE L1 -562 5602 5341 258 229 184 46 chr3 16869390 16869499 -210655079 + MIR3 SINE MIR 36 159 -49 400 240 52 31 chr3 16869500 16869596 -210654982 - MER5B DNA MER1_type 0 178 81 515 261 133 79 chr3 16870462 16870523 -210654055 - MLT1K LTR MaLR -20 568 512 2227 116 0 10 chr3 16870523 16870825 -210653753 + AluSg SINE Alu 1 299 -11 515 261 133 79 chr3 16870825 16871231 -210653347 - MLT1K LTR MaLR -76 512 76 1048 159 12 12 chr3 16872765 16872935 -210651643 + FRAM SINE Alu 1 166 -10 655 245 220 0 chr3 16873627 16873827 -210650751 - MIR SINE MIR -18 244 1 213 317 37 0 chr3 16873861 16873943 -210650635 - L3 LINE CR1 -284 1293 1209 1762 141 8 0 chr3 16874757 16875020 -210649558 - AluSx SINE Alu -13 299 35 420 82 0 0 chr3 16875410 16875471 -210649107 + (CA)n Simple_repeat Simple_repeat 2 62 0 1398 140 32 77 chr3 16875485 16875640 -210648938 + L1MB7 LINE L1 5913 6051 -133 2237 126 0 3 chr3 16875640 16875950 -210648628 + AluSx SINE Alu 1 309 -3 1398 140 32 77 chr3 16875950 16876079 -210648499 + L1MB7 LINE L1 6051 6184 0 787 294 83 40 chr3 16877763 16878235 -210646343 + MLT1K LTR MaLR 91 582 -6 257 270 0 16 chr3 16878260 16878323 -210646255 + L2 LINE L2 3207 3268 -4 485 200 0 0 chr3 16878358 16878438 -210646140 - MER3 DNA MER1_type -128 81 2 2502 188 32 28 chr3 16879507 16880075 -210644503 - L1MB8 LINE L1 -2 6176 5607 240 294 141 29 chr3 16881212 16881382 -210643196 + MER117 DNA MER1_type 2 190 -7 355 210 57 81 chr3 16881382 16881506 -210643072 + L2 LINE L2 3150 3270 -2 382 279 29 112 chr3 16881775 16881806 -210642772 + MIR3 SINE MIR 22 54 -154 180 0 0 0 chr3 16881806 16881826 -210642752 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2177 68 0 0 chr3 16881826 16882104 -210642474 - AluY SINE Alu -33 278 1 382 279 29 112 chr3 16882104 16882228 -210642350 + MIR3 SINE MIR 52 167 -41 1911 158 40 0 chr3 16882309 16882632 -210641946 + MER1B DNA MER1_type 2 337 0 21 0 0 0 chr3 16882712 16882733 -210641845 + AT_rich Low_complexity Low_complexity 1 21 0 270 213 120 0 chr3 16883406 16883481 -210641097 - MIR SINE MIR -24 238 155 180 263 0 0 chr3 16883484 16883522 -210641056 - MIR SINE MIR -223 39 2 403 279 82 33 chr3 16883870 16884053 -210640525 + MER117 DNA MER1_type 6 197 0 186 342 97 82 chr3 16884160 16884417 -210640161 - L2 LINE L2 -4 3268 3008 236 296 56 0 chr3 16885211 16885282 -210639296 - MIR3 SINE MIR -7 201 127 2278 76 0 16 chr3 16885287 16885591 -210638987 + AluY SINE Alu 1 299 -12 314 240 52 10 chr3 16885861 16885957 -210638621 + MER88 LTR ERVL 79 178 -286 * 1361 251 40 57 chr3 16885873 16886348 -210638230 - MER74A LTR ERVL -70 488 22 2012 116 3 0 chr3 16886384 16886719 -210637859 - AluSp SINE Alu 0 336 1 241 143 48 0 chr3 16887106 16887148 -210637430 - MLT1K LTR MaLR -8 580 537 1957 146 0 3 chr3 16887627 16887929 -210636649 + AluJb SINE Alu 1 301 -11 674 312 46 14 chr3 16888292 16888510 -210636068 + MIR SINE MIR 26 250 -12 252 0 0 0 chr3 16888627 16888655 -210635923 + (TG)n Simple_repeat Simple_repeat 2 29 0 2139 77 39 0 chr3 16888715 16889001 -210635577 + AluY SINE Alu 1 297 -14 1488 145 16 76 chr3 16889021 16889324 -210635254 + AluJb SINE Alu 18 302 -10 2094 105 23 3 chr3 16890389 16890693 -210633885 + AluSq SINE Alu 1 310 -3 527 242 87 13 chr3 16890754 16890903 -210633675 + MIR SINE MIR 1 160 -102 1954 114 4 0 chr3 16890912 16891216 -210633362 - AluSx SINE Alu 0 305 1 469 296 44 44 chr3 16891220 16891426 -210633152 + L2 LINE L2 3100 3305 -8 2275 95 3 0 chr3 16892709 16893014 -210631564 + AluSp SINE Alu 1 306 -7 1917 137 3 13 chr3 16893245 16893545 -210631033 + AluSx SINE Alu 1 297 -15 1459 196 101 6 chr3 16893746 16894063 -210630515 - MER7A DNA MER2_type -1 345 1 344 266 84 58 chr3 16894064 16894218 -210630360 - MIR SINE MIR -15 247 90 186 296 14 28 chr3 16894625 16894696 -210629882 + L2 LINE L2 2658 2727 -587 353 315 54 0 chr3 16894925 16895017 -210629561 + L2 LINE L2 3156 3252 -20 2050 117 24 0 chr3 16895277 16895575 -210629003 - AluSx SINE Alu -7 305 1 1122 294 104 19 chr3 16895617 16896079 -210628499 - MLT1K LTR MaLR 0 588 88 407 333 40 35 chr3 16896852 16897080 -210627498 - MIR SINE MIR -12 250 22 692 285 68 93 chr3 16897684 16897860 -210626718 - L2 LINE L2 -17 3296 3117 1673 170 0 29 chr3 16897860 16898166 -210626412 + AluJo SINE Alu 6 302 -10 692 285 68 93 chr3 16898166 16898640 -210625938 - L2 LINE L2 -196 3117 2637 309 241 54 108 chr3 16898745 16898911 -210625667 - MIR SINE MIR 0 262 106 396 0 0 0 chr3 16899407 16899451 -210625127 + (CA)n Simple_repeat Simple_repeat 2 45 0 620 264 63 116 chr3 16901166 16901624 -210622954 - MLT1K LTR MaLR -4 584 151 480 18 0 0 chr3 16902530 16902587 -210621991 + (CA)n Simple_repeat Simple_repeat 2 58 0 181 29 29 57 chr3 16903200 16903235 -210621343 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 2228 86 0 13 chr3 16903476 16903777 -210620801 - AluY SINE Alu -14 297 1 597 92 0 0 chr3 16903921 16903997 -210620581 + AluS SINE Alu 2 77 -236 3353 135 79 2 chr3 16904127 16904696 -210619882 + L1MC1 LINE L1 5493 6105 -228 318 133 0 50 chr3 16904697 16904757 -210619821 + AluJo SINE Alu 87 143 -159 * 1684 116 4 4 chr3 16904749 16904991 -210619587 + MER50 LTR ERV1 493 734 0 518 92 2 0 chr3 16905086 16905161 -210619417 - MER4-int LTR ERV1 -989 5609 5545 951 107 34 20 chr3 16905213 16905362 -210619216 + MER50-int LTR ERV1 6969 7119 -86 747 258 131 10 chr3 16905572 16905770 -210618808 - MIR SINE MIR -29 233 12 196 202 236 56 chr3 16905922 16906011 -210618567 + L2 LINE L2 3208 3312 -1 187 87 0 0 chr3 16906968 16906991 -210617587 + (T)n Simple_repeat Simple_repeat 1 23 0 724 129 0 0 chr3 16908185 16908286 -210616292 + AluS SINE Alu 2 102 -211 227 230 170 0 chr3 16908448 16908548 -210616030 + L2 LINE L2 3095 3211 -102 1837 148 10 3 chr3 16908548 16908846 -210615732 - AluJb SINE Alu -12 300 1 2039 142 0 0 chr3 16908857 16909167 -210615411 - AluSx SINE Alu -2 310 1 193 322 147 0 chr3 16909462 16909605 -210614973 + MIR SINE MIR 99 262 0 820 220 5 19 chr3 16909709 16909923 -210614655 - AluY SINE Alu 0 311 101 441 307 80 33 chr3 16910265 16910361 -210614217 - MIR SINE MIR -16 246 156 2107 84 0 36 chr3 16910361 16910670 -210613908 + AluY SINE Alu 1 298 -13 441 307 80 33 chr3 16910670 16910785 -210613793 - MIR SINE MIR -106 156 25 537 168 144 102 chr3 16911821 16912077 -210612501 - MER33 DNA MER1_type 0 324 58 258 235 25 12 chr3 16912139 16912220 -210612358 + AluY SINE Alu 217 298 -3 854 161 8 0 chr3 16912443 16912573 -210612005 + Tigger3(Golem) DNA MER2_type 47 177 -2852 1704 160 13 38 chr3 16912574 16912892 -210611686 + AluSx SINE Alu 3 312 0 230 222 49 49 chr3 16912905 16912986 -210611592 + L1MD3 LINE L1 7060 7140 -855 408 278 128 26 chr3 16913165 16913392 -210611186 + L1MC4 LINE L1 7369 7618 -424 2129 105 3 3 chr3 16913392 16913687 -210610891 + AluSp SINE Alu 1 295 -18 339 201 37 45 chr3 16913724 16913858 -210610720 - L1MC5 LINE L1 -141 7820 7688 236 323 47 0 chr3 16914828 16914923 -210609655 + MIR SINE MIR 64 163 -60 349 253 13 0 chr3 16915101 16915180 -210609398 + MIR SINE MIR 166 245 -17 232 227 130 64 chr3 16915259 16915371 -210609207 - MIR SINE MIR -42 220 87 1852 188 25 3 chr3 16915420 16915777 -210608801 - L1MB7 LINE L1 -208 5976 5612 1423 122 0 0 chr3 16916384 16916589 -210607989 + AluSg/x SINE Alu 101 305 -7 1520 169 0 4 chr3 16916716 16916971 -210607607 - AluJb SINE Alu -58 254 1 235 245 0 0 chr3 16917046 16917099 -210607479 - MLT1H LTR MaLR -13 536 484 234 321 92 9 chr3 16917163 16917272 -210607306 - MIR3 SINE MIR -45 163 46 344 273 145 29 chr3 16917659 16917831 -210606747 + MER117 DNA MER1_type 6 197 0 316 97 153 0 chr3 16920452 16920524 -210604054 - L1PA8 LINE L1 -151 6021 5939 192 205 26 0 chr3 16920926 16920965 -210603613 - L2 LINE L2 -43 3270 3231 1804 115 46 30 chr3 16921000 16921304 -210603274 - AluJb SINE Alu -3 309 1 311 281 52 10 chr3 16921371 16921467 -210603111 - L1ME LINE L1 -5019 1063 964 901 260 104 45 chr3 16921482 16921745 -210602833 - L1ME LINE L1 -5220 850 604 1989 114 3 7 chr3 16921745 16922042 -210602536 - AluSq SINE Alu -17 296 1 901 260 104 45 chr3 16922042 16922374 -210602204 - L1ME LINE L1 -5466 604 198 1410 183 15 0 chr3 16922412 16922685 -210601893 - AluSx SINE Alu -35 277 1 1592 171 0 17 chr3 16922687 16922974 -210601604 - AluJo SINE Alu -9 303 22 305 239 25 0 chr3 16922974 16923054 -210601524 - L1M4c LINE L1 -4556 1826 1689 * 343 125 18 0 chr3 16923049 16923105 -210601473 + L1MC/D LINE L1 5453 5509 -835 411 213 74 9 chr3 16923508 16923616 -210600962 - MER5B DNA MER1_type -63 115 1 595 341 18 27 chr3 16923638 16923861 -210600717 + MIR SINE MIR 2 222 -40 478 259 42 35 chr3 16924204 16924432 -210600146 + MIR3 SINE MIR 11 237 -25 255 228 22 76 chr3 16924654 16924746 -210599832 - MIR SINE MIR -57 151 65 271 295 73 8 chr3 16925142 16925268 -210599310 + MIR SINE MIR 35 166 -55 1684 148 0 11 chr3 16925844 16926121 -210598457 + AluJb SINE Alu 5 278 -34 424 239 69 11 chr3 16926554 16926706 -210597872 + L1MC/D LINE L1 5313 5472 -916 264 161 113 0 chr3 16927165 16927227 -210597351 - MIR SINE MIR -75 187 119 485 308 31 13 chr3 16927457 16927616 -210596962 - MIR SINE MIR -40 222 61 2214 108 0 0 chr3 16927619 16927924 -210596654 + AluSx SINE Alu 4 308 -4 256 229 0 0 chr3 16928123 16928171 -210596407 + AluY SINE Alu 133 180 -121 305 262 94 34 chr3 16929299 16929448 -210595130 + MIR3 SINE MIR 50 207 -1 1626 92 0 0 chr3 16929730 16929947 -210594631 + AluSx SINE Alu 1 217 -95 198 0 0 0 chr3 16930933 16930955 -210593623 + (CA)n Simple_repeat Simple_repeat 1 22 0 1992 221 33 53 chr3 16930971 16931633 -210592945 + MER82 DNA MER2_type 4 652 -1 340 207 126 0 chr3 16931706 16931793 -210592785 + MER53 DNA DNA 92 189 0 416 277 208 0 chr3 16931801 16931960 -210592618 - MIR SINE MIR -13 249 58 2083 109 13 16 chr3 16932042 16932355 -210592223 + AluSx SINE Alu 1 312 0 192 268 138 14 chr3 16932401 16932539 -210592039 - L2 LINE L2 -153 3119 2965 395 274 43 8 chr3 16932860 16932977 -210591601 + MIR SINE MIR 35 155 -107 1433 87 0 10 chr3 16933805 16934001 -210590577 - AluSg/x SINE Alu -10 299 106 308 270 43 26 chr3 16934304 16934419 -210590159 - MIR3 SINE MIR -32 176 60 237 162 206 0 chr3 16934455 16934523 -210590055 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 16935482 16935557 -210589021 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 16935552 16935736 -210588842 - MIR SINE MIR 0 262 75 216 250 36 0 chr3 16936853 16936909 -210587669 - MER5B DNA MER1_type -61 117 60 1047 161 62 13 chr3 16937139 16937417 -210587161 - MER2 DNA MER2_type 0 345 2 2618 183 67 17 chr3 16937807 16938386 -210586192 - L1MB7 LINE L1 0 6184 5577 234 244 128 13 chr3 16938388 16938466 -210586112 - MIR3 SINE MIR -54 154 68 1740 157 16 29 chr3 16939262 16939575 -210585003 + AluJb SINE Alu 1 309 -3 364 291 45 0 chr3 16940285 16940419 -210584159 + MIR SINE MIR 53 192 -70 1920 78 3 28 chr3 16940432 16940714 -210583864 + AluY SINE Alu 23 297 -14 319 183 0 0 chr3 16941323 16941383 -210583195 - L1ME3 LINE L1 -58 6104 6045 784 129 187 0 chr3 16941383 16941522 -210583056 - FRAM SINE Alu -14 162 1 691 229 56 19 chr3 16941627 16941841 -210582737 - L1ME3 LINE L1 -127 6035 5814 352 200 0 0 chr3 16941851 16941926 -210582652 - L1ME3 LINE L1 -1597 4549 4475 2095 89 3 10 chr3 16942033 16942335 -210582243 - AluSx SINE Alu -12 300 1 641 256 118 13 chr3 16942540 16942778 -210581800 - L1MC4a LINE L1 -1814 5994 5732 343 106 0 0 chr3 16942797 16942844 -210581734 + MER4E LTR ERV1 651 697 -69 213 109 0 55 chr3 16942844 16942899 -210581679 + (TA)n Simple_repeat Simple_repeat 2 53 0 2514 240 56 32 chr3 16943444 16944324 -210580254 - L1ME3 LINE L1 -1744 4402 3502 628 179 154 38 chr3 16944325 16944565 -210580013 - AluJo SINE Alu -7 305 38 226 340 30 10 chr3 16944779 16944879 -210579699 - L2 LINE L2 -561 2753 2652 308 222 33 33 chr3 16945297 16945388 -210579190 - MIR3 SINE MIR -47 161 70 2394 65 0 3 chr3 16945395 16945703 -210578875 + AluY SINE Alu 1 307 -4 216 236 6 35 chr3 16945812 16945870 -210578708 - MIR SINE MIR -61 147 95 190 279 132 0 chr3 16946747 16946815 -210577763 - MIR3 SINE MIR -54 154 78 407 228 177 32 chr3 16946830 16946988 -210577590 + MIR SINE MIR 20 200 -62 844 201 0 0 chr3 16947195 16947368 -210577210 - AluJb SINE Alu 0 306 134 496 91 0 0 chr3 16947383 16947449 -210577129 + L1MA3 LINE L1 6195 6260 -45 * 2038 96 0 51 chr3 16947449 16947763 -210576815 + AluSx SINE Alu 1 298 -14 835 260 109 30 chr3 16947763 16948087 -210576491 - L1MC4a LINE L1 -1856 5952 5600 * 1159 223 8 0 chr3 16948086 16948346 -210576232 + L1MB5 LINE L1 4915 5176 -970 24 0 0 0 chr3 16948362 16948386 -210576192 + AT_rich Low_complexity Low_complexity 1 24 0 2285 84 0 0 chr3 16948408 16948704 -210575874 - AluSg SINE Alu -14 296 1 2341 202 42 8 chr3 16948720 16949220 -210575358 + L1MB5 LINE L1 5491 6007 -167 616 231 42 7 chr3 16949230 16949373 -210575205 - L1MC4a LINE L1 -2191 5617 5470 1083 139 0 0 chr3 16949527 16949692 -210574886 + AluSg/x SINE Alu 138 302 -10 21 57 0 0 chr3 16950088 16950123 -210574455 + AT_rich Low_complexity Low_complexity 1 35 0 1938 103 30 30 chr3 16953004 16953305 -210571273 + AluSg SINE Alu 1 301 -9 204 333 19 0 chr3 16953668 16953722 -210570856 - L2 LINE L2 -13 3259 3205 363 297 103 7 chr3 16953929 16954084 -210570494 + MIR SINE MIR 20 189 -73 303 156 0 0 chr3 16954112 16954157 -210570421 - MER47A DNA MER2_type 0 366 322 803 117 17 0 chr3 16954160 16954280 -210570298 - AluSg/x SINE Alu -12 300 179 1079 116 29 6 chr3 16954283 16954455 -210570123 - MER47A DNA MER2_type -121 245 70 2026 102 3 14 chr3 16954673 16954966 -210569612 + AluSp SINE Alu 1 290 -23 934 186 72 0 chr3 16954985 16955178 -210569400 + AluJo SINE Alu 82 288 -24 1120 223 60 45 chr3 16955298 16955566 -210569012 + L1MEc LINE L1 745 1023 -5373 2083 101 0 0 chr3 16955566 16955863 -210568715 + AluSq SINE Alu 6 302 0 1120 223 60 45 chr3 16955863 16955975 -210568603 + L1MEc LINE L1 1023 1132 -5264 296 247 103 41 chr3 16957634 16957731 -210566847 - MIR SINE MIR -78 184 82 273 136 0 0 chr3 16958127 16958171 -210566407 - Charlie4 DNA MER1_type -54 1907 1864 2011 107 0 21 chr3 16958609 16958898 -210565680 + AluSx SINE Alu 1 283 -29 617 138 147 17 chr3 16959433 16959549 -210565029 - FLAM_C SINE Alu -2 131 1 1927 114 35 7 chr3 16959901 16960190 -210564388 + AluSx SINE Alu 1 297 -15 1884 116 40 7 chr3 16960841 16961143 -210563435 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 16961246 16961279 -210563299 + (T)n Simple_repeat Simple_repeat 1 33 0 754 145 0 0 chr3 16961369 16961486 -210563092 + FLAM_C SINE Alu 1 117 -16 2441 131 59 5 chr3 16961528 16961933 -210562645 + Tigger3(Golem) DNA MER2_type 2603 3029 0 372 266 60 96 chr3 16962225 16962424 -210562154 - MIR3 SINE MIR -10 198 7 896 9 0 0 chr3 16962756 16962861 -210561717 - AluYa5/8 SINE Alu -2 308 204 316 263 54 46 chr3 16962927 16963119 -210561459 - MLT1J1 LTR MaLR -7 443 243 * 485 252 19 0 chr3 16963114 16963221 -210561357 - MLT1J1 LTR MaLR -337 109 1 714 284 42 21 chr3 16964443 16964682 -210559896 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 16964704 16964844 -210559734 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 16964893 16965179 -210559399 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 16965212 16965381 -210559197 + L1MB7 LINE L1 6007 6173 -11 245 320 80 0 chr3 16965551 16965651 -210558927 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 16965690 16965802 -210558776 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 16965882 16965933 -210558645 - LTR67 LTR ERVL 0 557 508 330 85 73 73 chr3 16966767 16966849 -210557729 + Alu SINE Alu 219 300 0 2053 85 0 0 chr3 16967408 16967666 -210556912 - AluSq SINE Alu -29 284 27 425 297 99 26 chr3 16967699 16967891 -210556687 + MIR SINE MIR 34 239 -23 180 0 0 0 chr3 16968114 16968134 -210556444 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2154 94 0 10 chr3 16968579 16968878 -210555700 + AluSq SINE Alu 1 296 -17 1515 158 52 7 chr3 16969015 16969287 -210555291 + AluJb SINE Alu 27 310 -2 474 303 148 0 chr3 16969514 16969676 -210554902 + MIR SINE MIR 2 187 -75 1260 186 104 13 chr3 16970086 16970415 -210554163 - MER93a LTR ERV1 0 402 1 265 224 122 31 chr3 16970432 16970530 -210554048 - MARNA DNA Mariner -236 350 244 24 0 0 0 chr3 16971921 16971945 -210552633 + AT_rich Low_complexity Low_complexity 1 24 0 1280 157 4 30 chr3 16972252 16972487 -210552091 + AluJo SINE Alu 1 229 -83 1640 141 74 0 chr3 16972691 16972960 -210551618 + AluJo SINE Alu 1 289 -23 2156 104 17 0 chr3 16973459 16973757 -210550821 + AluSx SINE Alu 1 303 -9 828 211 6 0 chr3 16973772 16973938 -210550640 + AluJb SINE Alu 137 303 -9 380 206 0 41 chr3 16974039 16974136 -210550442 - L1MB8 LINE L1 -1 6177 6085 1531 173 0 0 chr3 16974265 16974514 -210550064 + AluJb SINE Alu 1 249 -63 2162 68 7 10 chr3 16974865 16975160 -210549418 + AluY SINE Alu 1 294 -17 282 95 0 0 chr3 16975169 16975211 -210549367 + (TG)n Simple_repeat Simple_repeat 1 42 0 450 232 56 21 chr3 16975797 16975939 -210548639 + AluSg/x SINE Alu 134 280 -32 1701 142 39 3 chr3 16976922 16977204 -210547374 + AluSx SINE Alu 1 292 -20 297 0 0 0 chr3 16977216 16977249 -210547329 + (CA)n Simple_repeat Simple_repeat 2 34 0 679 238 14 7 chr3 16979262 16979409 -210545169 + FAM SINE Alu 1 148 -37 450 296 46 7 chr3 16979657 16979809 -210544769 + MIR SINE MIR 98 255 -7 302 314 0 0 chr3 16979889 16979959 -210544619 - L2 LINE L2 -15 3298 3229 265 267 128 0 chr3 16980028 16980114 -210544464 + L2 LINE L2 3217 3313 0 932 180 0 11 chr3 16981150 16981328 -210543250 - FRAM SINE Alu -8 168 1 1939 150 3 0 chr3 16981486 16981793 -210542785 - AluSx SINE Alu -4 308 1 832 136 0 0 chr3 16983387 16983505 -210541073 - 5S rRNA rRNA -1 120 3 254 263 127 25 chr3 16983710 16983828 -210540750 + L1P LINE L1 4883 5012 -1134 1804 168 0 0 chr3 16983863 16984155 -210540423 - AluJb SINE Alu -15 297 6 261 196 0 36 chr3 16984708 16984764 -210539814 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 16985335 16985356 -210539222 + AT_rich Low_complexity Low_complexity 1 21 0 599 108 0 0 chr3 16985638 16985721 -210538857 + AluS SINE Alu 2 84 -229 293 254 173 76 chr3 16985748 16985945 -210538633 - MIR SINE MIR -46 216 1 391 325 294 2 chr3 16986273 16986764 -210537814 - L2 LINE L2 -6 3307 2657 189 107 0 0 chr3 16987412 16987440 -210537138 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 1852 154 3 3 chr3 16987791 16988090 -210536488 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 16988290 16988315 -210536263 + AT_rich Low_complexity Low_complexity 1 25 0 2128 112 0 10 chr3 16988324 16988629 -210535949 + AluSg SINE Alu 1 302 -8 1325 164 12 12 chr3 16988635 16988879 -210535699 - AluJo SINE Alu -19 293 50 1532 152 83 90 chr3 16989074 16989219 -210535359 - L1MB7 LINE L1 -19 6165 6020 2278 158 41 14 chr3 16989219 16989637 -210534941 - MSTB1 LTR MaLR 0 432 4 1532 152 83 90 chr3 16989637 16989750 -210534828 - L1MB7 LINE L1 -164 6020 5908 1710 195 26 3 chr3 16989750 16990089 -210534489 + MER7A DNA MER2_type 2 346 0 1532 152 83 90 chr3 16990089 16990262 -210534316 - L1MB7 LINE L1 -276 5908 5736 1038 157 68 36 chr3 16990309 16990558 -210534020 + AluJo SINE Alu 1 257 -55 1394 167 8 0 chr3 16991083 16991320 -210533258 + AluSg SINE Alu 59 300 -10 2349 72 13 0 chr3 16991320 16991627 -210532951 + AluY SINE Alu 1 311 0 443 86 129 0 chr3 16991636 16991729 -210532849 + Tigger7 DNA MER2_type 2241 2345 -142 186 167 0 0 chr3 16991824 16991860 -210532718 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 330 283 57 38 chr3 16992521 16992680 -210531898 - MIR SINE MIR -35 227 66 1359 153 0 26 chr3 16993140 16993368 -210531210 - AluSx SINE Alu -29 283 62 519 267 9 37 chr3 16993670 16993854 -210530724 + L1ME2 LINE L1 5984 6166 0 1431 183 66 3 chr3 16994365 16994654 -210529924 + AluJo SINE Alu 3 309 -3 1555 131 12 116 chr3 16994677 16995012 -210529566 + AluJo SINE Alu 1 300 -2 226 292 83 0 chr3 16995523 16995595 -210528983 - L2 LINE L2 -5 3267 3190 895 155 23 6 chr3 16995600 16995774 -210528804 + L1MB3 LINE L1 6006 6182 -1 373 335 8 23 chr3 16996180 16996394 -210528184 + MIR SINE MIR 44 251 -11 796 220 29 24 chr3 16997219 16997428 -210527150 - L1ME3 LINE L1 0 6162 5953 1939 149 10 0 chr3 16998536 16998845 -210525733 + AluSx SINE Alu 1 312 0 183 351 65 0 chr3 16998867 16998944 -210525634 + L3 LINE CR1 613 694 -883 12786 31 3 0 chr3 16998977 17001248 -210523330 - L1PA3 LINE L1 -3 6152 3867 5908 37 12 12 chr3 17001253 17001977 -210522601 - SVA Other Other 0 1386 663 21308 97 22 23 chr3 17002110 17005892 -210518686 - L1PA3 LINE L1 -2301 3845 1 774 189 20 33 chr3 17005894 17006047 -210518531 - LTR28 LTR ERV1 -5 1015 865 * 2195 190 178 97 chr3 17006031 17006994 -210517584 - LTR28 LTR ERV1 -37 983 1 445 298 189 73 chr3 17007003 17007439 -210517139 + L3 LINE CR1 723 1107 -470 3327 102 37 6 chr3 17007439 17007921 -210516657 - LOR1a LTR ERV1 0 497 1 445 298 189 73 chr3 17007921 17008193 -210516385 + L3 LINE CR1 1107 1527 -50 2237 81 0 20 chr3 17008193 17008491 -210516087 + AluSg SINE Alu 1 292 -18 445 298 189 73 chr3 17008491 17008543 -210516035 + L3 LINE CR1 1527 1572 -5 264 261 23 57 chr3 17009389 17009477 -210515101 - MIR SINE MIR -79 183 99 212 158 0 26 chr3 17009805 17009843 -210514735 + CT-rich Low_complexity Low_complexity 4 40 0 1072 110 49 0 chr3 17010389 17010552 -210514026 + AluSg/x SINE Alu 132 302 -8 239 95 48 0 chr3 17011136 17011178 -210513400 + (CATA)n Simple_repeat Simple_repeat 1 44 0 182 344 16 16 chr3 17011455 17011577 -210513001 + L2 LINE L2 2624 2745 -569 2595 186 41 43 chr3 17011951 17012460 -210512118 - MER119 DNA MER1_type -3 580 71 2254 97 0 3 chr3 17012460 17012771 -210511807 + AluSq SINE Alu 1 310 -3 2595 186 41 43 chr3 17012771 17012842 -210511736 - MER119 DNA MER1_type -512 71 1 365 375 7 0 chr3 17013002 17013146 -210511432 + L3 LINE CR1 1432 1576 -1 528 296 67 85 chr3 17013349 17013642 -210510936 + L1M4 LINE L1 2712 3009 -3137 1849 101 61 7 chr3 17013642 17013920 -210510658 - AluSc SINE Alu -11 298 6 528 296 67 85 chr3 17013920 17013969 -210510609 + L1M4 LINE L1 3009 3057 -3089 1756 170 7 0 chr3 17013969 17014263 -210510315 + AluJb SINE Alu 1 296 -16 528 296 67 85 chr3 17014263 17014321 -210510257 + L1M4 LINE L1 3057 3106 -3040 202 310 17 0 chr3 17014331 17014389 -210510189 + MIR SINE MIR 204 262 0 323 272 79 26 chr3 17014472 17014586 -210509992 + L1MC4 LINE L1 7693 7812 -230 2117 106 0 20 chr3 17015567 17015870 -210508708 + AluSq SINE Alu 12 308 -5 1918 119 54 0 chr3 17016076 17016370 -210508208 - AluSg SINE Alu 0 310 1 448 286 118 70 chr3 17016610 17016967 -210507611 - L1ME3 LINE L1 -196 5966 5593 1853 113 17 7 chr3 17017555 17017846 -210506732 - AluSx SINE Alu -18 294 1 1781 143 0 32 chr3 17018204 17018518 -210506060 + AluJb SINE Alu 1 304 -8 2144 105 0 7 chr3 17018573 17018877 -210505701 + AluSc SINE Alu 1 302 -7 268 341 0 0 chr3 17019173 17019264 -210505314 + MIR3 SINE MIR 104 194 -14 234 132 0 0 chr3 17019587 17019625 -210504953 - MIR SINE MIR -101 161 124 2448 61 0 6 chr3 17019856 17020169 -210504409 - AluY SINE Alu 0 311 1 470 242 16 23 chr3 17020435 17020563 -210504015 - MIR SINE MIR -128 134 8 181 191 32 117 chr3 17020642 17020736 -210503842 + MIR SINE MIR 110 195 -67 197 244 0 171 chr3 17021360 17021483 -210503095 + MIR SINE MIR 119 220 -42 2424 70 0 0 chr3 17021858 17022159 -210502419 - AluY SINE Alu -10 301 1 569 296 17 17 chr3 17022281 17022453 -210502125 - MIR SINE MIR -75 187 16 447 275 70 7 chr3 17023186 17023328 -210501250 + MIR SINE MIR 32 182 -80 1577 159 0 88 chr3 17024786 17025126 -210499452 + AluJo SINE Alu 3 312 0 243 0 0 0 chr3 17025339 17025366 -210499212 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1735 144 22 0 chr3 17025368 17025638 -210498940 - AluSx SINE Alu -36 276 1 180 0 0 0 chr3 17025756 17025776 -210498802 + (T)n Simple_repeat Simple_repeat 1 20 0 2359 74 0 0 chr3 17025863 17026160 -210498418 - AluY SINE Alu -14 297 1 1855 150 0 7 chr3 17026415 17026715 -210497863 + AluJb SINE Alu 1 298 -14 609 262 101 56 chr3 17026764 17027280 -210497298 - L1M4 LINE L1 -1732 4414 3876 288 77 0 0 chr3 17027332 17027371 -210497207 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 89 0 0 chr3 17027371 17027416 -210497162 + LTR66 LTR ERVL 394 438 -172 1966 127 21 0 chr3 17027422 17027705 -210496873 - AluSx SINE Alu -23 289 1 2286 81 0 3 chr3 17028855 17029153 -210495425 + AluSg SINE Alu 5 301 -9 1910 138 0 0 chr3 17031025 17031307 -210493271 + AluSx SINE Alu 21 302 -10 207 308 66 0 chr3 17031419 17031510 -210493068 - MIR SINE MIR -139 123 27 1804 155 30 3 chr3 17031897 17032194 -210492384 + AluJb SINE Alu 1 305 -7 328 326 0 0 chr3 17032209 17032298 -210492280 - MIR SINE MIR -6 256 168 188 65 0 32 chr3 17032352 17032383 -210492195 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1678 193 3 0 chr3 17032746 17033041 -210491537 + AluJb SINE Alu 1 296 -16 220 403 37 0 chr3 17033044 17033178 -210491400 + MIR SINE MIR 121 259 -3 352 311 107 6 chr3 17037023 17037200 -210487378 + MIR3 SINE MIR 11 205 -3 210 346 89 0 chr3 17037216 17037317 -210487261 + L2 LINE L2 2512 2621 -693 551 308 67 65 chr3 17037427 17037813 -210486765 + L2 LINE L2 2926 3312 -1 309 303 81 27 chr3 17038012 17038233 -210486345 - MIR SINE MIR -10 252 20 312 328 34 8 chr3 17038682 17038801 -210485777 + MIR SINE MIR 19 140 -122 1461 166 3 89 chr3 17038866 17039204 -210485374 + AluJb SINE Alu 2 310 -2 960 249 9 0 chr3 17039473 17039690 -210484888 - MIR SINE MIR -27 235 17 227 250 69 0 chr3 17040045 17040117 -210484461 - L1ME1 LINE L1 -24 6142 6066 1742 258 61 40 chr3 17040140 17040744 -210483834 - L1ME1 LINE L1 -277 5889 5273 1158 169 0 41 chr3 17040744 17040963 -210483615 + AluJb SINE Alu 85 294 -18 1303 233 60 64 chr3 17040966 17041234 -210483344 - L1ME1 LINE L1 -873 5273 5006 2301 47 0 4 chr3 17041234 17041511 -210483067 - AluY SINE Alu -35 276 1 1303 233 60 64 chr3 17041511 17041775 -210482803 - L1ME1 LINE L1 -1140 5006 4743 1528 91 0 10 chr3 17043929 17044137 -210480441 + AluSx SINE Alu 1 206 -106 277 279 156 12 chr3 17045143 17045483 -210479095 - L2 LINE L2 -42 3230 2842 1553 145 20 4 chr3 17046202 17046457 -210478121 + AluJo SINE Alu 34 292 -20 2287 107 0 0 chr3 17046474 17046783 -210477795 - AluSx SINE Alu -3 309 1 247 238 36 24 chr3 17047518 17047602 -210476976 + MIR SINE MIR 65 149 -113 2116 149 30 149 chr3 17047656 17048161 -210476417 - L1M4 LINE L1 -370 5808 5245 1716 158 48 10 chr3 17048161 17048453 -210476125 - AluJb SINE Alu -7 305 3 2116 149 30 149 chr3 17048453 17048509 -210476069 - L1M4 LINE L1 -933 5245 5184 440 143 0 0 chr3 17048509 17048579 -210475999 - FLAM_C SINE Alu -2 141 72 2116 149 30 149 chr3 17048579 17048760 -210475818 - L1M4 LINE L1 -994 5184 5091 1094 302 134 21 chr3 17048820 17049379 -210475199 - L1MC4a LINE L1 -1762 6046 5425 362 219 16 11 chr3 17049401 17049560 -210475018 - L1ME2 LINE L1 -15 6149 5879 1001 202 109 8 chr3 17049563 17049830 -210474748 - L1MA9 LINE L1 -33 6279 5986 * 1889 255 88 3 chr3 17049829 17050579 -210473999 - L1ME2 LINE L1 -273 5891 5081 289 243 40 69 chr3 17050574 17050697 -210473881 - L1MC4a LINE L1 -747 5399 5300 * 1625 156 20 24 chr3 17050697 17050992 -210473586 - AluJb SINE Alu -1 311 18 289 243 40 69 chr3 17050992 17051081 -210473497 - L1MC4a LINE L1 -846 5300 5210 392 329 60 24 chr3 17051129 17051378 -210473200 - L1MC4a LINE L1 -1000 5146 4889 829 148 0 28 chr3 17051899 17052041 -210472537 - FLAM_C SINE Alu -5 138 1 2252 110 0 0 chr3 17052052 17052360 -210472218 - AluSx SINE Alu -4 308 1 326 270 101 14 chr3 17052549 17052697 -210471881 - L1ME LINE L1 -504 5617 5457 296 307 193 0 chr3 17053506 17053672 -210470906 + MIR SINE MIR 59 256 -6 182 222 0 63 chr3 17054691 17054754 -210469824 - L2 LINE L2 -89 3224 3166 201 158 0 0 chr3 17058219 17058257 -210466321 + A-rich Low_complexity Low_complexity 5 42 0 251 146 36 36 chr3 17059118 17059173 -210465405 + (CAGG)n Simple_repeat Simple_repeat 4 58 0 337 314 181 41 chr3 17060623 17061037 -210463541 + L3 LINE CR1 456 927 -650 257 341 77 0 chr3 17061958 17062049 -210462529 - MIR SINE MIR -55 153 56 2250 98 10 0 chr3 17062180 17062485 -210462093 - AluSx SINE Alu -4 308 1 244 347 33 33 chr3 17063757 17063907 -210460671 + L2 LINE L2 3118 3267 -5 214 276 172 35 chr3 17063954 17064070 -210460508 + L2 LINE L2 3141 3272 0 227 200 0 0 chr3 17064951 17065001 -210459577 + CT-rich Low_complexity Low_complexity 3 52 0 188 67 33 0 chr3 17066504 17066534 -210458044 + (CA)n Simple_repeat Simple_repeat 2 32 0 825 201 23 0 chr3 17066556 17066730 -210457848 - L1MD2 LINE L1 -31 6328 6151 933 181 6 0 chr3 17070022 17070182 -210454396 + AluJb SINE Alu 135 295 -17 290 236 14 0 chr3 17070226 17070298 -210454280 + L1MB4 LINE L1 6100 6172 -8 21 0 0 0 chr3 17070300 17070321 -210454257 + AT_rich Low_complexity Low_complexity 1 21 0 1735 142 60 0 chr3 17071690 17071972 -210452606 + AluJb SINE Alu 1 299 -13 1861 147 0 3 chr3 17072113 17072405 -210452173 + AluJo SINE Alu 1 291 -21 347 224 0 0 chr3 17072537 17072613 -210451965 - MIR SINE MIR -112 150 75 2033 100 7 0 chr3 17073174 17073603 -210450975 + AluSx SINE Alu 1 431 0 489 338 26 13 chr3 17073699 17073959 -210450619 - L1ME LINE L1 -567 5603 5341 1616 191 108 32 chr3 17073967 17074401 -210450177 + MLT1C LTR MaLR 1 467 0 1482 165 68 28 chr3 17074662 17074983 -210449595 + L1MA5A LINE L1 5957 6290 -7 477 0 0 0 chr3 17074990 17075043 -210449535 + (TG)n Simple_repeat Simple_repeat 2 54 0 240 314 32 48 chr3 17075264 17075388 -210449190 - MIR SINE MIR -55 153 32 1898 133 21 0 chr3 17077521 17077806 -210446772 + AluSx SINE Alu 1 291 -21 243 287 69 10 chr3 17077965 17078066 -210446512 - L3 LINE CR1 -195 1382 1276 28 29 0 0 chr3 17078802 17078837 -210445741 + AT_rich Low_complexity Low_complexity 1 35 0 2273 67 3 0 chr3 17078968 17079252 -210445326 - AluY SINE Alu -26 285 1 2697 157 104 4 chr3 17080225 17080753 -210443825 - L1MB3 LINE L1 0 6183 5603 2062 125 0 16 chr3 17081269 17081572 -210443006 - AluSx SINE Alu -14 298 1 289 256 53 73 chr3 17084386 17084772 -210439806 + L1M1 LINE L1 5259 5572 -728 250 218 64 39 chr3 17084862 17084940 -210439638 - MLT1K LTR MaLR 0 588 509 234 0 0 0 chr3 17085125 17085151 -210439427 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2103 103 10 3 chr3 17085355 17085655 -210438923 + AluSx SINE Alu 1 302 -10 265 268 87 58 chr3 17088917 17089055 -210435523 - MIR SINE MIR -57 205 64 21 0 0 0 chr3 17089085 17089106 -210435472 + AT_rich Low_complexity Low_complexity 1 21 0 2041 120 40 0 chr3 17089112 17089412 -210435166 + AluSx SINE Alu 1 312 0 203 241 121 0 chr3 17089619 17089677 -210434901 + L2 LINE L2 3207 3271 -1 27 62 0 0 chr3 17089766 17089814 -210434764 + AT_rich Low_complexity Low_complexity 1 48 0 2599 16 0 23 chr3 17089845 17090155 -210434423 + AluYb8 SINE Alu 1 303 -15 2235 105 0 0 chr3 17090228 17090532 -210434046 + AluSx SINE Alu 3 306 -6 710 167 125 0 chr3 17090933 17091077 -210433501 + MER5B DNA MER1_type 17 178 0 707 229 177 19 chr3 17091380 17091651 -210432927 + MER5C DNA MER1_type 1 314 -10 1315 170 8 13 chr3 17091969 17092204 -210432374 - MER46A DNA MER2_type 0 236 3 225 259 19 0 chr3 17092291 17092345 -210432233 + L2 LINE L2 3254 3308 -5 310 322 8 16 chr3 17092545 17092666 -210431912 + L1ME4a LINE L1 4549 4668 -1478 639 241 98 86 chr3 17093203 17093948 -210430630 + L1ME4a LINE L1 5267 6024 -97 522 0 0 0 chr3 17094432 17094490 -210430088 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1538 157 46 29 chr3 17094490 17094771 -210429807 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 17095255 17095291 -210429287 + (CA)n Simple_repeat Simple_repeat 2 37 0 1932 133 36 0 chr3 17095602 17095903 -210428675 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 17096765 17096788 -210427790 + AT_rich Low_complexity Low_complexity 1 23 0 2037 98 0 3 chr3 17096952 17097237 -210427341 - AluSx SINE Alu -8 304 21 1763 264 72 14 chr3 17097829 17098397 -210426181 - L1ME3A LINE L1 -161 6009 5409 841 165 90 66 chr3 17098477 17098689 -210425889 + MER20 DNA MER1_type 1 217 -2 188 314 76 59 chr3 17098903 17099021 -210425557 - MIR SINE MIR -128 134 15 247 284 15 15 chr3 17099622 17099689 -210424889 + MER5B DNA MER1_type 2 68 -110 365 269 21 11 chr3 17100404 17100497 -210424081 + L2 LINE L2 3179 3272 0 260 365 52 9 chr3 17101599 17101714 -210422864 + MIR SINE MIR 16 135 -73 1768 156 0 10 chr3 17102457 17102764 -210421814 - AluJo SINE Alu -8 304 1 1529 157 6 80 chr3 17103536 17103860 -210420718 - pTR5 LTR ERV1 -860 1578 1279 5191 257 85 50 chr3 17104065 17104158 -210420420 + HAL1 LINE L1 118 206 -2301 3928 20 0 0 chr3 17104158 17104605 -210419973 - L1PA3 LINE L1 -1 6154 5708 5191 257 85 50 chr3 17104605 17105410 -210419168 + HAL1 LINE L1 206 982 -1525 2340 76 3 0 chr3 17105410 17105712 -210418866 + AluSg SINE Alu 1 303 -7 5191 257 85 50 chr3 17105712 17107109 -210417469 + HAL1 LINE L1 982 2494 -13 193 250 31 47 chr3 17107170 17107234 -210417344 - L2 LINE L2 -262 3010 2948 322 237 79 26 chr3 17108098 17108196 -210416382 - MLT1J LTR MaLR 0 511 408 802 200 82 0 chr3 17108196 17108366 -210416212 - MER3 DNA MER1_type 0 209 26 1694 114 0 81 chr3 17108400 17108697 -210415881 + AluSx SINE Alu 32 304 -8 228 167 0 0 chr3 17108700 17108736 -210415842 - MER3 DNA MER1_type -173 36 1 471 284 108 56 chr3 17108736 17108835 -210415743 - MLT1J LTR MaLR -96 415 323 1507 196 50 79 chr3 17108835 17108932 -210415646 - Charlie4a DNA MER1_type -1454 507 409 2095 113 0 3 chr3 17108932 17109233 -210415345 + AluSx SINE Alu 1 300 -12 1507 196 50 79 chr3 17109233 17109655 -210414923 - Charlie4a DNA MER1_type -1552 409 3 471 284 108 56 chr3 17109655 17109879 -210414699 - MLT1J LTR MaLR -188 323 75 239 167 51 90 chr3 17109915 17109993 -210414585 - MLT1L LTR MaLR -540 75 1 1321 71 157 0 chr3 17110177 17110374 -210414204 + MER30 DNA MER1_type 3 230 0 1301 180 43 29 chr3 17110406 17110684 -210413894 - AluJo SINE Alu -30 282 1 3578 139 267 26 chr3 17112808 17114627 -210409951 - pTR5 LTR ERV1 0 2606 1524 350 224 31 20 chr3 17114630 17114728 -210409850 - LTR30 LTR ERV1 -80 642 544 5008 117 51 73 chr3 17114728 17115741 -210408837 - pTR5 LTR ERV1 -413 2025 743 184 185 0 0 chr3 17115805 17115832 -210408746 - L2 LINE L2 -25 3288 3262 549 196 0 83 chr3 17115873 17116006 -210408572 - AluJb SINE Alu -88 224 103 540 305 56 19 chr3 17116008 17116221 -210408357 - MIR SINE MIR -41 221 1 1812 144 7 7 chr3 17116774 17117072 -210407506 - AluSg SINE Alu -12 298 1 1672 97 0 0 chr3 17117251 17117477 -210407101 - AluSx SINE Alu -25 287 62 21 36 0 0 chr3 17117961 17117989 -210406589 + AT_rich Low_complexity Low_complexity 1 28 0 208 314 0 0 chr3 17118012 17118063 -210406515 - L2 LINE L2 -17 3296 3246 3168 111 65 67 chr3 17118088 17118153 -210406425 + L1MC1 LINE L1 5344 5408 -925 1172 22 0 0 chr3 17118153 17118281 -210406297 + L1PA4 LINE L1 6015 6152 -3 3168 111 65 67 chr3 17118281 17118735 -210405843 + L1MC1 LINE L1 5408 5864 -469 1955 137 0 0 chr3 17118735 17119027 -210405551 + AluSx SINE Alu 1 292 -20 3168 111 65 67 chr3 17119027 17119119 -210405459 + L1MC1 LINE L1 5864 5955 -378 1235 120 5 0 chr3 17119120 17119304 -210405274 + AluSg/x SINE Alu 128 312 0 394 167 83 0 chr3 17119314 17119398 -210405180 + L1MC1 LINE L1 5950 6040 -293 271 327 82 64 chr3 17119402 17119732 -210404846 - L2 LINE L2 -78 3194 2859 2144 105 0 7 chr3 17120199 17120503 -210404075 + AluSc SINE Alu 1 302 -7 268 341 0 0 chr3 17120799 17120890 -210403688 + MIR3 SINE MIR 104 194 -14 234 132 0 0 chr3 17121213 17121251 -210403327 - MIR SINE MIR -101 161 124 2440 61 0 6 chr3 17121474 17121786 -210402792 - AluY SINE Alu -1 310 1 470 242 16 23 chr3 17122052 17122180 -210402398 - MIR SINE MIR -128 134 8 181 191 32 117 chr3 17122259 17122353 -210402225 + MIR SINE MIR 110 195 -67 182 252 0 171 chr3 17122977 17123100 -210401478 + MIR SINE MIR 119 220 -42 2432 70 0 0 chr3 17123475 17123777 -210400801 - AluY SINE Alu -9 302 1 569 296 17 17 chr3 17123899 17124071 -210400507 - MIR SINE MIR -75 187 16 447 275 70 7 chr3 17124804 17124946 -210399632 + MIR SINE MIR 32 182 -80 1564 158 0 90 chr3 17126404 17126739 -210397839 + AluJo SINE Alu 3 307 -5 279 0 0 0 chr3 17126957 17126988 -210397590 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1735 144 22 0 chr3 17126990 17127260 -210397318 - AluSx SINE Alu -36 276 1 189 0 0 0 chr3 17127378 17127399 -210397179 + (T)n Simple_repeat Simple_repeat 1 21 0 2165 104 0 0 chr3 17127486 17127784 -210396794 - AluSx SINE Alu -14 298 1 1855 150 0 7 chr3 17128039 17128339 -210396239 + AluJb SINE Alu 1 298 -14 623 260 101 56 chr3 17128388 17128904 -210395674 - L1M4 LINE L1 -1732 4414 3876 234 91 0 0 chr3 17128956 17128989 -210395589 + (TG)n Simple_repeat Simple_repeat 2 34 0 252 89 0 0 chr3 17128989 17129034 -210395544 + LTR66 LTR ERVL 394 438 -172 1966 127 21 0 chr3 17129040 17129323 -210395255 - AluSx SINE Alu -23 289 1 2270 81 0 3 chr3 17130473 17130769 -210393809 + AluSg SINE Alu 5 299 -11 1879 138 0 0 chr3 17132641 17132923 -210391655 + AluSx SINE Alu 21 302 -10 207 319 66 0 chr3 17133035 17133126 -210391452 - MIR SINE MIR -139 123 27 1777 154 30 3 chr3 17133513 17133811 -210390767 + AluJb SINE Alu 1 306 -6 350 268 0 12 chr3 17133826 17133908 -210390670 - MIR SINE MIR -6 256 176 188 65 0 32 chr3 17133969 17134000 -210390578 + (TCC)n Simple_repeat Simple_repeat 1 30 0 183 298 8 105 chr3 17134084 17134208 -210390370 - L2 LINE L2 0 3313 3202 1627 193 3 0 chr3 17134363 17134658 -210389920 + AluJb SINE Alu 1 296 -16 219 390 34 0 chr3 17134677 17134795 -210389783 + MIR SINE MIR 138 259 -3 208 330 22 22 chr3 17137209 17137300 -210387278 + L2 LINE L2 3137 3227 -45 657 280 92 62 chr3 17137933 17138032 -210386546 - MLT1J LTR MaLR -96 415 320 1507 196 50 79 chr3 17138032 17138129 -210386449 - Charlie4a DNA MER1_type -1454 507 409 2095 113 0 3 chr3 17138129 17138430 -210386148 + AluSx SINE Alu 1 300 -12 1507 196 50 79 chr3 17138430 17138852 -210385726 - Charlie4a DNA MER1_type -1552 409 3 657 280 92 62 chr3 17138852 17139084 -210385494 - MLT1J LTR MaLR -191 320 67 183 114 0 0 chr3 17139084 17139119 -210385459 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 657 280 92 62 chr3 17139119 17139189 -210385389 - MLT1J LTR MaLR -444 67 1 1333 71 152 0 chr3 17139373 17139571 -210385007 + MER30 DNA MER1_type 3 230 0 1301 180 43 29 chr3 17139603 17139881 -210384697 - AluJo SINE Alu -30 282 1 3662 145 264 23 chr3 17142006 17143825 -210380753 - pTR5 LTR ERV1 0 2606 1524 350 224 31 20 chr3 17143828 17143926 -210380652 - LTR30 LTR ERV1 -80 642 544 5014 116 51 73 chr3 17143926 17144938 -210379640 - pTR5 LTR ERV1 -413 2025 743 184 185 0 0 chr3 17145002 17145029 -210379549 - L2 LINE L2 -25 3288 3262 549 196 0 83 chr3 17145070 17145203 -210379375 - AluJb SINE Alu -88 224 103 442 296 66 28 chr3 17145205 17145418 -210379160 - MIR SINE MIR -41 221 1 2272 88 3 0 chr3 17145971 17146268 -210378310 - AluSg SINE Alu -12 298 1 1430 287 116 29 chr3 17146408 17147063 -210377515 - HAL1 LINE L1 -1596 911 200 2057 30 8 11 chr3 17147073 17147337 -210377241 + L1HS LINE L1 5708 5970 -185 255 353 8 38 chr3 17147674 17147807 -210376771 - MIR SINE MIR -61 147 19 300 301 0 11 chr3 17147845 17147913 -210376665 + GA-rich Low_complexity Low_complexity 1 69 -23 1735 191 42 26 chr3 17147913 17148295 -210376283 + MLT1B LTR MaLR 3 390 0 300 301 0 11 chr3 17148295 17148319 -210376259 + GA-rich Low_complexity Low_complexity 69 92 0 203 311 38 45 chr3 17150668 17150800 -210373778 + MIR SINE MIR 13 143 -119 1085 288 99 45 chr3 17151647 17152273 -210372305 - L1MC4 LINE L1 -1 8041 7382 256 186 0 0 chr3 17152604 17152647 -210371931 + L2 LINE L2 3224 3266 -6 346 113 0 0 chr3 17153657 17153710 -210370868 + L1MB8 LINE L1 6121 6173 -5 447 167 19 19 chr3 17153711 17153819 -210370759 - Charlie1 DNA MER1_type -60 2701 2594 252 341 38 8 chr3 17153907 17154039 -210370539 - L2 LINE L2 -255 3017 2882 691 274 49 10 chr3 17156842 17157046 -210367532 - MIR SINE MIR -44 218 7 4690 156 54 6 chr3 17157912 17158853 -210365725 - L1MB7 LINE L1 -8 6176 5193 984 228 30 25 chr3 17160058 17160295 -210364283 + MER8 DNA MER2_type 2 239 0 1986 125 14 3 chr3 17160495 17160792 -210363786 - AluJb SINE Alu -10 302 3 322 350 49 14 chr3 17160844 17160987 -210363591 + MER5A DNA MER1_type 1 148 -41 206 269 0 0 chr3 17161321 17161373 -210363205 + MIR SINE MIR 100 151 -111 1553 167 17 6 chr3 17162484 17162828 -210361750 + L1MB8 LINE L1 5768 6177 -1 352 264 80 25 chr3 17163750 17163913 -210360665 + MARNA DNA Mariner 70 241 -345 396 0 0 0 chr3 17163955 17163999 -210360579 + (CA)n Simple_repeat Simple_repeat 2 45 0 330 26 0 0 chr3 17163998 17164037 -210360541 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 2101 92 0 54 chr3 17164081 17164397 -210360181 + AluSq SINE Alu 3 301 -12 936 202 62 44 chr3 17164665 17164885 -210359693 + L1MA6 LINE L1 6024 6251 -49 2193 106 3 3 chr3 17164885 17165196 -210359382 + AluSp SINE Alu 1 311 -2 936 202 62 44 chr3 17165196 17165247 -210359331 + L1MA6 LINE L1 6251 6300 0 2364 72 0 0 chr3 17165318 17165622 -210358956 + AluY SINE Alu 1 304 -7 388 259 208 23 chr3 17165884 17166100 -210358478 + L1ME4a LINE L1 5866 6121 0 1796 81 60 25 chr3 17166263 17166548 -210358030 + AluSx SINE Alu 11 305 -7 969 199 84 146 chr3 17167026 17167140 -210357438 + L1ME3A LINE L1 5412 5532 -630 2183 99 0 3 chr3 17167140 17167452 -210357126 + AluSq SINE Alu 1 311 -2 969 199 84 146 chr3 17167452 17168057 -210356521 + L1ME3A LINE L1 5532 6067 -95 1336 199 84 47 chr3 17168094 17168497 -210356081 + MER95 LTR ERV 14 431 0 1877 134 34 0 chr3 17168818 17169116 -210355462 + AluSx SINE Alu 1 308 -4 594 251 41 23 chr3 17169493 17169664 -210354914 + L2 LINE L2 3125 3298 -15 182 279 0 0 chr3 17169889 17169932 -210354646 + MIR SINE MIR 61 103 -105 2284 80 0 10 chr3 17170164 17170476 -210354102 + AluSc SINE Alu 1 309 0 663 356 69 21 chr3 17170787 17171352 -210353226 + L2 LINE L2 2140 2731 -583 1873 134 20 0 chr3 17171456 17171748 -210352830 - AluSx SINE Alu -14 298 1 300 295 173 35 chr3 17173899 17174072 -210350506 + L1ME3A LINE L1 5965 6161 -9 202 216 0 0 chr3 17175291 17175328 -210349250 + CT-rich Low_complexity Low_complexity 2 38 0 2112 100 0 10 chr3 17176366 17176666 -210347912 + AluSx SINE Alu 1 297 -15 280 293 28 99 chr3 17176684 17176865 -210347713 + MIR3 SINE MIR 19 186 -22 357 267 86 26 chr3 17176973 17177089 -210347489 - L2 LINE L2 -5 3267 3145 2311 83 3 0 chr3 17177611 17177913 -210346665 + AluSq SINE Alu 1 303 -10 1879 138 0 0 chr3 17179786 17180068 -210344510 + AluSx SINE Alu 21 302 -10 216 308 66 0 chr3 17180180 17180271 -210344307 - MIR SINE MIR -139 123 27 1769 155 30 3 chr3 17180658 17180955 -210343623 + AluJb SINE Alu 1 305 -7 350 268 0 12 chr3 17180970 17181052 -210343526 - MIR SINE MIR -6 256 176 188 65 0 32 chr3 17181113 17181144 -210343434 + (TCC)n Simple_repeat Simple_repeat 1 30 0 2104 57 0 11 chr3 17181408 17181691 -210342887 - AluY SINE Alu -31 280 1 732 264 187 29 chr3 17181963 17182248 -210342330 - L2 LINE L2 0 3313 3074 2217 63 13 7 chr3 17182248 17182548 -210342030 + AluY SINE Alu 1 302 -9 732 264 187 29 chr3 17182548 17182929 -210341649 - L2 LINE L2 -239 3074 2440 213 309 91 42 chr3 17183191 17183498 -210341080 + L2 LINE L2 2050 2371 -943 2221 103 0 3 chr3 17184122 17184433 -210340145 - AluSx SINE Alu -2 310 1 230 260 83 42 chr3 17185373 17185469 -210339109 - L2 LINE L2 -64 3208 3109 2401 78 7 0 chr3 17185484 17185828 -210338750 - AluSq SINE Alu 0 346 1 24 0 0 0 chr3 17186451 17186475 -210338103 + AT_rich Low_complexity Low_complexity 1 24 0 1959 133 0 3 chr3 17187051 17187395 -210337183 - AluSx SINE Alu 0 312 1 391 307 70 35 chr3 17187747 17187975 -210336603 + MLT1K LTR MaLR 345 580 -8 545 244 45 61 chr3 17188233 17188472 -210336106 + MLT1L LTR MaLR 105 407 -197 2027 132 3 0 chr3 17189060 17189371 -210335207 + AluSx SINE Alu 1 312 0 335 69 0 69 chr3 17189509 17189567 -210335011 - MADE1 DNA Mariner -26 54 1 1956 106 48 0 chr3 17189593 17189885 -210334693 + AluSx SINE Alu 1 306 -6 691 286 17 6 chr3 17189981 17190156 -210334422 + MIR3 SINE MIR 21 197 -11 410 162 0 0 chr3 17190543 17190611 -210333967 - Alu SINE Alu -5 307 240 2391 53 0 7 chr3 17190726 17191027 -210333551 - AluY SINE Alu -1 310 12 189 0 0 0 chr3 17191085 17191106 -210333472 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 608 220 57 0 chr3 17191284 17191425 -210333153 + MER5A DNA MER1_type 9 157 -32 342 331 31 8 chr3 17191576 17191703 -210332875 - L2 LINE L2 -3 3310 3181 203 346 70 39 chr3 17191900 17192056 -210332522 + L2 LINE L2 3103 3263 -9 818 151 66 0 chr3 17192128 17192280 -210332298 + FRAM SINE Alu 1 161 -15 1361 186 90 4 chr3 17192560 17192839 -210331739 - AluJb SINE Alu -9 303 1 221 246 368 0 chr3 17193171 17193285 -210331293 + MIR3 SINE MIR 39 194 -14 2087 98 18 0 chr3 17193639 17193925 -210330653 + AluSx SINE Alu 1 291 -21 326 235 0 0 chr3 17194213 17194281 -210330297 - MER5A DNA MER1_type -83 106 39 1058 185 95 18 chr3 17194316 17194538 -210330040 + MER8 DNA MER2_type 1 239 0 666 40 0 0 chr3 17195264 17195339 -210329239 - pTR5 LTR ERV1 -2298 140 66 350 224 31 20 chr3 17195339 17195437 -210329141 - LTR30 LTR ERV1 -80 642 544 4996 117 51 73 chr3 17195437 17196449 -210328129 - pTR5 LTR ERV1 -413 2025 743 184 185 0 0 chr3 17196513 17196540 -210328038 - L2 LINE L2 -25 3288 3262 549 196 0 83 chr3 17196581 17196714 -210327864 - AluJb SINE Alu -88 224 103 540 305 56 19 chr3 17196716 17196929 -210327649 - MIR SINE MIR -41 221 1 2184 104 0 0 chr3 17197482 17197780 -210326798 - AluSg SINE Alu -12 298 1 210 143 0 0 chr3 17197934 17197969 -210326609 + (TG)n Simple_repeat Simple_repeat 2 36 0 2082 93 0 3 chr3 17197970 17198259 -210326319 - AluSq SINE Alu -25 288 1 1796 81 60 25 chr3 17198851 17199136 -210325442 - AluSx SINE Alu -7 305 11 388 259 208 23 chr3 17199299 17199515 -210325063 - L1ME4a LINE L1 0 6121 5866 2364 72 0 0 chr3 17199777 17200081 -210324497 - AluY SINE Alu -7 304 1 930 202 62 44 chr3 17200152 17200203 -210324375 - L1MA6 LINE L1 0 6300 6251 2228 107 3 0 chr3 17200203 17200513 -210324065 - AluSp SINE Alu -2 311 1 930 202 62 44 chr3 17200513 17200733 -210323845 - L1MA6 LINE L1 -49 6251 6024 1713 96 0 63 chr3 17201001 17201271 -210323307 - AluSq SINE Alu -12 301 49 269 202 82 13 chr3 17201361 17201461 -210323117 + L1ME3 LINE L1 5590 5700 -464 239 176 0 59 chr3 17201479 17201547 -210323031 + L1MB4 LINE L1 6117 6180 0 906 236 142 36 chr3 17201552 17201882 -210322696 + L1ME3 LINE L1 5703 6067 -95 1336 199 84 47 chr3 17201919 17202322 -210322256 + MER95 LTR ERV 14 431 0 1877 134 34 0 chr3 17202643 17202941 -210321637 + AluSx SINE Alu 1 308 -4 594 251 41 23 chr3 17203318 17203489 -210321089 + L2 LINE L2 3125 3298 -15 182 279 0 0 chr3 17203714 17203757 -210320821 + MIR SINE MIR 61 103 -105 2284 80 0 10 chr3 17203989 17204301 -210320277 + AluSc SINE Alu 1 309 0 663 356 69 21 chr3 17204612 17205177 -210319401 + L2 LINE L2 2140 2731 -583 1873 134 20 0 chr3 17205281 17205573 -210319005 - AluSx SINE Alu -14 298 1 300 295 173 35 chr3 17207725 17207898 -210316680 + L1ME3A LINE L1 5965 6161 -9 202 216 0 0 chr3 17209117 17209154 -210315424 + CT-rich Low_complexity Low_complexity 2 38 0 2084 103 0 10 chr3 17210192 17210492 -210314086 + AluSx SINE Alu 1 297 -15 449 250 7 37 chr3 17211361 17211497 -210313081 + L1MC4 LINE L1 7911 8042 0 1551 154 98 31 chr3 17211610 17211928 -210312650 - MER2 DNA MER2_type -6 339 1 384 309 79 0 chr3 17213329 17213481 -210311097 - L2 LINE L2 -5 3267 3104 1425 232 41 19 chr3 17214772 17215138 -210309440 - MLT1A2 LTR MaLR 0 374 1 237 253 138 0 chr3 17215140 17215227 -210309351 + MER103 DNA DNA 3 101 -65 432 0 0 0 chr3 17215827 17215875 -210308703 + (TG)n Simple_repeat Simple_repeat 2 49 0 785 274 79 8 chr3 17217832 17218073 -210306505 + MIR SINE MIR 3 260 -2 189 0 0 0 chr3 17218735 17218756 -210305822 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 182 273 0 18 chr3 17219246 17219301 -210305277 - L2 LINE L2 -4 3309 3256 324 244 16 81 chr3 17219519 17219642 -210304936 + MIR SINE MIR 138 252 -10 1254 274 139 52 chr3 17219768 17220043 -210304535 + L1MC4a LINE L1 5600 5850 -1958 2211 82 3 0 chr3 17220043 17220357 -210304221 + AluSp SINE Alu 1 313 0 1254 274 139 52 chr3 17220357 17220419 -210304159 + L1MC4a LINE L1 5850 5905 -1903 6453 26 4 0 chr3 17220419 17221157 -210303421 + L1PA3 LINE L1 5412 6152 -3 1254 274 139 52 chr3 17221157 17221785 -210302793 + L1MC4a LINE L1 5905 6650 -1158 926 173 113 16 chr3 17221786 17221971 -210302607 + MER3 DNA MER1_type 1 203 -6 972 226 16 41 chr3 17222035 17222278 -210302300 + L1MC4 LINE L1 6751 6987 -1055 1980 182 75 27 chr3 17222584 17223024 -210301554 + LOR1b LTR ERV1 1 461 0 1867 136 7 10 chr3 17223197 17223492 -210301086 - AluSx SINE Alu -18 294 1 1624 175 0 7 chr3 17223666 17223957 -210300621 - AluJo SINE Alu -23 289 1 24 0 0 0 chr3 17224434 17224458 -210300120 + AT_rich Low_complexity Low_complexity 1 24 0 2181 97 3 0 chr3 17224686 17224984 -210299594 - AluSx SINE Alu -13 299 1 258 238 36 24 chr3 17225719 17225803 -210298775 + MIR SINE MIR 65 149 -113 2215 145 31 151 chr3 17225857 17226362 -210298216 - L1M4 LINE L1 -370 5808 5244 1629 164 48 10 chr3 17226362 17226654 -210297924 - AluJb SINE Alu -7 305 3 2215 145 31 151 chr3 17226654 17226710 -210297868 - L1M4 LINE L1 -934 5244 5183 420 114 0 29 chr3 17226710 17226780 -210297798 - FLAM_A SINE Alu -4 138 71 2215 145 31 151 chr3 17226780 17226952 -210297626 - L1M4 LINE L1 -995 5183 5100 1022 303 110 22 chr3 17227021 17227559 -210297019 - L1MC4a LINE L1 -1762 6046 5462 378 202 23 41 chr3 17227602 17227766 -210296812 - L1ME2 LINE L1 -15 6149 5870 * 1024 184 116 15 chr3 17227764 17228031 -210296547 - L1MA9 LINE L1 -33 6279 5986 * 1873 245 91 6 chr3 17228030 17228780 -210295798 - L1ME2 LINE L1 -273 5891 5081 338 264 83 70 chr3 17228775 17228914 -210295664 - L1MC4a LINE L1 -747 5399 5263 * 1601 151 21 14 chr3 17228914 17229193 -210295385 - AluJb SINE Alu -14 298 18 338 264 83 70 chr3 17229193 17229579 -210294999 - L1MC4a LINE L1 -883 5263 4889 809 148 0 28 chr3 17230100 17230242 -210294336 - FLAM_C SINE Alu -5 138 1 2216 110 0 0 chr3 17230253 17230561 -210294017 - AluSx SINE Alu -4 308 1 350 270 101 14 chr3 17230750 17230898 -210293680 - L1ME LINE L1 -504 5617 5457 284 307 193 0 chr3 17231707 17231873 -210292705 + MIR SINE MIR 59 256 -6 234 0 0 0 chr3 17233747 17233773 -210290805 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2129 127 10 0 chr3 17233977 17234269 -210290309 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 17234269 17234292 -210290286 + (GA)n Simple_repeat Simple_repeat 2 24 0 479 243 7 37 chr3 17235020 17235156 -210289422 + L1MC4 LINE L1 7911 8042 0 1595 148 98 31 chr3 17235269 17235587 -210288991 - MER2 DNA MER2_type -6 339 1 322 309 79 0 chr3 17236988 17237140 -210287438 - L2 LINE L2 -5 3267 3104 1412 232 41 19 chr3 17238431 17238797 -210285781 - MLT1A2 LTR MaLR 0 374 1 233 253 138 0 chr3 17238799 17238886 -210285692 + MER103 DNA DNA 3 101 -65 432 0 0 0 chr3 17239486 17239534 -210285044 + (TG)n Simple_repeat Simple_repeat 2 49 0 672 267 80 9 chr3 17241491 17241716 -210282862 + MIR SINE MIR 3 243 -19 189 0 0 0 chr3 17242394 17242415 -210282163 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 291 250 12 0 chr3 17243221 17243301 -210281277 + MIR SINE MIR 172 252 -10 1210 268 148 54 chr3 17243488 17243702 -210280876 + L1MC4a LINE L1 5660 5853 -1955 2339 82 3 0 chr3 17243702 17244016 -210280562 + AluSp SINE Alu 1 313 0 1210 268 148 54 chr3 17244016 17244078 -210280500 + L1MC4a LINE L1 5853 5908 -1900 6470 26 4 0 chr3 17244078 17244816 -210279762 + L1PA3 LINE L1 5412 6152 -3 1210 268 148 54 chr3 17244816 17245444 -210279134 + L1MC4a LINE L1 5908 6650 -1158 928 173 113 16 chr3 17245445 17245630 -210278948 + MER3 DNA MER1_type 1 203 -6 1119 221 111 47 chr3 17245694 17246038 -210278540 + L1MC4 LINE L1 6751 7116 -926 1980 182 75 27 chr3 17246241 17246681 -210277897 + LOR1b LTR ERV1 1 461 0 1986 136 7 10 chr3 17246854 17247149 -210277429 - AluSx SINE Alu -18 294 1 1738 175 0 7 chr3 17247323 17247614 -210276964 - AluJo SINE Alu -23 289 1 24 0 0 0 chr3 17248091 17248115 -210276463 + AT_rich Low_complexity Low_complexity 1 24 0 2120 113 3 10 chr3 17248343 17248644 -210275934 - AluSx SINE Alu -13 299 1 246 242 263 0 chr3 17248703 17248802 -210275776 - MIR SINE MIR -19 243 119 448 259 28 99 chr3 17248945 17249157 -210275421 - MIR SINE MIR -33 229 33 283 237 32 43 chr3 17249992 17250085 -210274493 - MIR SINE MIR -61 147 56 251 270 50 20 chr3 17253096 17253196 -210271382 - MIR SINE MIR -62 146 44 358 251 64 47 chr3 17253434 17253605 -210270973 + MIR3 SINE MIR 33 206 -2 1150 180 81 25 chr3 17254676 17254796 -210269782 + L1MB8 LINE L1 5258 5370 -814 2211 116 48 22 chr3 17254796 17255151 -210269427 - THE1B LTR MaLR 0 364 1 1150 180 81 25 chr3 17255151 17255314 -210269264 + L1MB8 LINE L1 5370 5557 -627 1687 111 6 102 chr3 17255317 17255632 -210268946 + LTR12 LTR ERV1 1 285 -429 310 234 64 0 chr3 17255633 17255727 -210268851 + LTR30 LTR ERV1 553 652 -70 763 71 0 0 chr3 17255727 17255825 -210268753 + LTR12 LTR ERV1 617 714 0 2898 185 27 12 chr3 17255837 17256433 -210268145 + L1MB8 LINE L1 5569 6173 -5 382 256 68 8 chr3 17257506 17257639 -210266939 + MER104 DNA Tc2 1 141 -39 2094 111 0 20 chr3 17257692 17257990 -210266588 - AluSx SINE Alu -20 292 1 292 357 9 0 chr3 17259747 17259859 -210264719 - MIR SINE MIR -61 147 35 242 266 0 16 chr3 17259916 17259980 -210264598 + GA-rich Low_complexity Low_complexity 1 63 0 1456 224 45 29 chr3 17259984 17260363 -210264215 + MLT1B LTR MaLR 3 387 -3 1100 291 96 42 chr3 17263021 17263647 -210260931 - L1MC4 LINE L1 -1 8041 7382 239 186 0 0 chr3 17263978 17264021 -210260557 + L2 LINE L2 3224 3266 -6 351 113 0 0 chr3 17265031 17265084 -210259494 + L1MB8 LINE L1 6121 6173 -5 458 167 19 19 chr3 17265085 17265193 -210259385 - Charlie1 DNA MER1_type -60 2701 2594 215 341 38 8 chr3 17265281 17265413 -210259165 - L2 LINE L2 -255 3017 2882 616 270 49 10 chr3 17268215 17268419 -210256159 - MIR SINE MIR -44 218 7 4716 157 54 6 chr3 17269285 17270226 -210254352 - L1MB7 LINE L1 -8 6176 5193 998 224 30 25 chr3 17271429 17271666 -210252912 + MER8 DNA MER2_type 2 239 0 2114 122 14 3 chr3 17271866 17272161 -210252417 - AluJb SINE Alu -12 300 3 276 340 10 10 chr3 17272213 17272313 -210252265 + MER5A DNA MER1_type 1 100 -89 1567 167 17 6 chr3 17273852 17274196 -210250382 + L1MB8 LINE L1 5768 6177 -1 355 264 80 25 chr3 17275118 17275281 -210249297 + MARNA DNA Mariner 70 241 -345 270 0 0 0 chr3 17275323 17275353 -210249225 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr3 17275352 17275372 -210249206 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2253 93 0 53 chr3 17275419 17275740 -210248838 + AluSq SINE Alu 3 306 -7 971 195 62 44 chr3 17276008 17276228 -210248350 + L1MA6 LINE L1 6024 6251 -49 2355 107 3 0 chr3 17276228 17276538 -210248040 + AluSp SINE Alu 1 311 -2 971 195 62 44 chr3 17276538 17276589 -210247989 + L1MA6 LINE L1 6251 6300 0 2511 69 0 0 chr3 17276660 17276964 -210247614 + AluY SINE Alu 1 304 -7 1950 77 59 25 chr3 17277606 17277892 -210246686 + AluSx SINE Alu 11 306 -6 974 194 88 150 chr3 17278370 17278484 -210246094 + L1ME3A LINE L1 5412 5532 -630 2309 99 0 3 chr3 17278484 17278796 -210245782 + AluSq SINE Alu 1 311 -2 974 194 88 150 chr3 17278796 17279401 -210245177 + L1ME3A LINE L1 5532 6067 -95 1345 199 84 47 chr3 17279438 17279841 -210244737 + MER95 LTR ERV 14 431 0 1852 136 37 0 chr3 17280162 17280460 -210244118 + AluSx SINE Alu 1 308 0 523 251 41 23 chr3 17280836 17281007 -210243571 + L2 LINE L2 3125 3298 -15 2411 80 0 10 chr3 17281507 17281819 -210242759 + AluSc SINE Alu 1 309 0 499 350 68 23 chr3 17282130 17282659 -210241919 + L2 LINE L2 2140 2692 -622 1998 133 20 0 chr3 17282799 17283092 -210241486 - AluSx SINE Alu -13 299 1 201 345 43 7 chr3 17283170 17283309 -210241269 - L2 LINE L2 -1365 1949 1806 202 216 0 0 chr3 17286636 17286673 -210237905 + CT-rich Low_complexity Low_complexity 2 38 0 2240 100 0 10 chr3 17287711 17288011 -210236567 + AluSx SINE Alu 1 297 -15 231 288 38 12 chr3 17288130 17288210 -210236368 + MIR3 SINE MIR 105 186 -22 310 267 86 26 chr3 17288318 17288434 -210236144 - L2 LINE L2 -5 3267 3145 2326 99 3 0 chr3 17288956 17289259 -210235319 + AluSq SINE Alu 1 304 -9 191 277 76 42 chr3 17292520 17292639 -210231939 - MIR SINE MIR -76 186 64 21 0 0 0 chr3 17292669 17292690 -210231888 + AT_rich Low_complexity Low_complexity 1 21 0 2163 120 40 0 chr3 17292696 17292996 -210231582 + AluSx SINE Alu 1 312 0 182 259 121 0 chr3 17293203 17293261 -210231317 + L2 LINE L2 3207 3271 -1 27 62 0 0 chr3 17293350 17293398 -210231180 + AT_rich Low_complexity Low_complexity 1 48 0 2736 16 0 23 chr3 17293429 17293739 -210230839 + AluYb8 SINE Alu 1 303 -15 2347 109 0 0 chr3 17293812 17294116 -210230462 + AluSx SINE Alu 3 306 -6 641 167 125 0 chr3 17294517 17294661 -210229917 + MER5B DNA MER1_type 17 178 0 541 233 177 19 chr3 17294964 17295235 -210229343 + MER5C DNA MER1_type 1 314 -10 1324 170 8 13 chr3 17295553 17295788 -210228790 - MER46A DNA MER2_type 0 236 3 204 209 0 0 chr3 17295886 17295929 -210228649 + L2 LINE L2 3266 3308 -5 664 235 103 91 chr3 17296787 17297532 -210227046 + L1ME4a LINE L1 5267 6024 -97 522 0 0 0 chr3 17298016 17298074 -210226504 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1648 157 46 29 chr3 17298074 17298355 -210226223 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 17298839 17298875 -210225703 + (CA)n Simple_repeat Simple_repeat 2 37 0 2018 136 36 0 chr3 17299186 17299487 -210225091 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 17300349 17300372 -210224206 + AT_rich Low_complexity Low_complexity 1 23 0 2073 109 0 3 chr3 17300536 17300821 -210223757 - AluSx SINE Alu -8 304 21 1754 264 72 14 chr3 17301413 17301981 -210222597 - L1ME3A LINE L1 -161 6009 5409 838 165 90 66 chr3 17302061 17302273 -210222305 + MER20 DNA MER1_type 1 217 -2 219 284 15 15 chr3 17303206 17303273 -210221305 + MER5B DNA MER1_type 2 68 -110 330 269 21 11 chr3 17303988 17304081 -210220497 + L2 LINE L2 3179 3272 0 223 365 52 9 chr3 17305183 17305298 -210219280 + MIR SINE MIR 16 135 -73 1414 201 7 17 chr3 17306058 17306351 -210218227 - AluJo SINE Alu -22 290 1 1645 172 3 3 chr3 17356457 17356742 -210167836 - AluJb SINE Alu -27 285 1 2302 82 3 13 chr3 17356748 17357064 -210167514 - AluSp SINE Alu 0 313 1 255 149 21 0 chr3 17357071 17357118 -210167460 + L1MD1 LINE L1 6182 6229 -13 371 229 119 37 chr3 17357209 17357318 -210167260 - L2 LINE L2 -8 3305 3188 237 214 71 0 chr3 17357445 17357501 -210167077 + MIR SINE MIR 196 255 -7 2275 85 3 0 chr3 17357704 17358009 -210166569 + AluSq SINE Alu 1 306 -7 223 245 0 20 chr3 17358297 17358346 -210166232 + polypyrimidine Low_complexity Low_complexity 1 48 0 838 170 0 22 chr3 17358346 17358608 -210165970 + CT-rich Low_complexity Low_complexity 1 256 0 1664 171 0 4 chr3 17358608 17358882 -210165696 - AluJb SINE Alu -39 273 1 231 331 150 24 chr3 17359382 17359509 -210165069 + MIR3 SINE MIR 18 160 -48 341 213 43 32 chr3 17359546 17359640 -210164938 + MER117 DNA MER1_type 56 150 -47 2159 113 6 3 chr3 17359662 17359973 -210164605 + AluSx SINE Alu 1 312 0 784 326 8 12 chr3 17360179 17360424 -210164154 - MIR SINE MIR 0 262 19 342 247 12 12 chr3 17360450 17360531 -210164047 + MER5A DNA MER1_type 25 105 -84 213 309 91 42 chr3 17360859 17361166 -210163412 - L2 LINE L2 -943 2371 2050 709 274 189 28 chr3 17361428 17361808 -210162770 + L2 LINE L2 2440 2757 -556 2371 47 10 7 chr3 17361808 17362109 -210162469 - AluY SINE Alu -9 302 1 709 274 189 28 chr3 17362109 17362393 -210162185 + L2 LINE L2 2757 3313 0 2664 26 0 0 chr3 17362665 17362976 -210161602 + AluY SINE Alu 1 311 0 410 162 0 0 chr3 17363090 17363158 -210161420 + Alu SINE Alu 240 307 -5 691 286 17 6 chr3 17363545 17363720 -210160858 - MIR3 SINE MIR -11 197 21 1956 106 48 0 chr3 17363816 17364108 -210160470 - AluSx SINE Alu -6 306 1 335 69 0 69 chr3 17364134 17364192 -210160386 + MADE1 DNA Mariner 1 54 -26 2027 132 3 0 chr3 17364330 17364641 -210159937 - AluSx SINE Alu 0 312 1 545 244 45 61 chr3 17365229 17365468 -210159110 - MLT1L LTR MaLR -197 314 105 391 307 70 35 chr3 17365726 17365954 -210158624 - MLT1K LTR MaLR -8 580 345 1959 133 0 3 chr3 17366306 17366650 -210157928 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 17367226 17367250 -210157328 + AT_rich Low_complexity Low_complexity 1 24 0 201 189 38 0 chr3 17367366 17367419 -210157159 + (CAA)n Simple_repeat Simple_repeat 3 57 0 353 262 29 19 chr3 17367761 17367864 -210156714 - MIR SINE MIR -108 154 51 2373 57 3 3 chr3 17367900 17368197 -210156381 - AluY SINE Alu -14 297 1 2315 73 3 10 chr3 17368448 17368796 -210155782 + AluSp SINE Alu 1 346 0 230 260 83 42 chr3 17368811 17368907 -210155671 + L2 LINE L2 3109 3208 -64 1768 156 0 10 chr3 17369847 17370154 -210154424 + AluJo SINE Alu 1 304 -8 260 365 52 9 chr3 17370897 17371012 -210153566 - MIR SINE MIR -73 135 16 365 269 21 11 chr3 17372114 17372207 -210152371 - L2 LINE L2 0 3272 3179 247 284 15 15 chr3 17372922 17372989 -210151589 - MER5B DNA MER1_type -110 68 2 188 314 76 59 chr3 17373590 17373708 -210150870 + MIR SINE MIR 15 134 -128 841 165 90 66 chr3 17373922 17374134 -210150444 - MER20 DNA MER1_type -2 217 1 1361 186 90 4 chr3 17374293 17374572 -210150006 + AluJb SINE Alu 1 303 -9 818 151 66 0 chr3 17374852 17375004 -210149574 - FRAM SINE Alu -15 161 1 203 346 70 39 chr3 17375076 17375232 -210149346 - L2 LINE L2 -9 3263 3103 342 331 31 8 chr3 17375429 17375556 -210149022 + L2 LINE L2 3181 3310 -3 608 220 57 0 chr3 17375707 17375848 -210148730 - MER5A DNA MER1_type -32 157 9 189 0 0 0 chr3 17376026 17376047 -210148531 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2136 101 0 3 chr3 17376105 17376402 -210148176 + AluSx SINE Alu 12 307 -5 2967 142 12 8 chr3 17376943 17377458 -210147120 + L1MB3 LINE L1 5660 6176 -7 2255 196 88 70 chr3 17377475 17377617 -210146961 + L1ME2 LINE L1 5429 5567 -597 2297 56 7 13 chr3 17377617 17377920 -210146658 + AluY SINE Alu 1 301 -10 2255 196 88 70 chr3 17377920 17378231 -210146347 + L1ME2 LINE L1 5567 5871 -293 1624 159 52 4 chr3 17378231 17378534 -210146044 - AluJo SINE Alu 0 316 1 2255 196 88 70 chr3 17378534 17378666 -210145912 + L1ME2 LINE L1 5871 5999 -165 2006 122 3 0 chr3 17378666 17378960 -210145618 - AluSx SINE Alu -17 295 1 2255 196 88 70 chr3 17378960 17379084 -210145494 + L1ME2 LINE L1 5999 6154 -10 1839 138 17 7 chr3 17379089 17379386 -210145192 + AluJo SINE Alu 5 304 -8 1096 176 75 24 chr3 17379561 17379816 -210144762 + ORSL DNA AcHobo 6 273 -2 2217 73 0 0 chr3 17379942 17380230 -210144348 + AluY SINE Alu 24 311 0 235 359 0 0 chr3 17380410 17380474 -210144104 - L2 LINE L2 -3 3310 3247 295 287 0 21 chr3 17380509 17380603 -210143975 - MIR3 SINE MIR -108 100 9 26 30 0 0 chr3 17380895 17380928 -210143650 + AT_rich Low_complexity Low_complexity 1 33 0 5857 142 77 39 chr3 17381015 17381618 -210142960 - Tigger3b DNA MER2_type -1797 1231 652 2142 95 3 0 chr3 17381618 17381912 -210142666 - AluSg SINE Alu -15 295 1 5857 142 77 39 chr3 17381912 17382494 -210142084 - Tigger3b DNA MER2_type -2376 652 1 27 0 0 0 chr3 17382564 17382591 -210141987 + AT_rich Low_complexity Low_complexity 1 27 0 615 108 0 0 chr3 17382627 17382710 -210141868 - AluJb SINE Alu -35 277 195 1979 117 0 17 chr3 17382959 17383257 -210141321 + AluSx SINE Alu 1 293 -19 326 235 0 0 chr3 17383600 17383668 -210140910 - MER5A DNA MER1_type -83 106 39 1058 185 95 18 chr3 17383703 17383925 -210140653 + MER8 DNA MER2_type 1 239 0 181 300 38 25 chr3 17384890 17384925 -210139653 - MIR3 SINE MIR -14 194 161 200 179 51 0 chr3 17384925 17384964 -210139614 - L2 LINE L2 -2128 1186 1146 2123 246 154 43 chr3 17385249 17386002 -210138576 + HAL1 LINE L1 661 1568 -939 2448 90 7 0 chr3 17386002 17386312 -210138266 + AluSx SINE Alu 1 312 0 2123 246 154 43 chr3 17386312 17386621 -210137957 + HAL1 LINE L1 1568 1841 -666 398 243 69 58 chr3 17386672 17386861 -210137717 - MIR SINE MIR -26 236 46 2222 114 0 13 chr3 17387330 17387645 -210136933 + AluSx SINE Alu 1 311 -1 2527 53 0 26 chr3 17388376 17388714 -210135864 + AluY SINE Alu 1 330 0 32 26 0 0 chr3 17389193 17389232 -210135346 + AT_rich Low_complexity Low_complexity 1 39 0 1726 172 14 17 chr3 17389548 17389845 -210134733 - AluJb SINE Alu -16 296 1 1695 101 141 25 chr3 17389929 17390206 -210134372 + AluSx SINE Alu 1 309 -3 223 231 64 13 chr3 17390364 17390442 -210134136 - L2 LINE L2 -310 3003 2922 1743 147 3 42 chr3 17390554 17390698 -210133880 + AluSx SINE Alu 1 130 -182 2450 91 0 3 chr3 17390698 17391006 -210133572 + AluSx SINE Alu 1 307 -5 1743 147 3 42 chr3 17391006 17391147 -210133431 + AluSx SINE Alu 130 275 -37 383 313 91 5 chr3 17391232 17391430 -210133148 + L3 LINE CR1 1339 1553 -24 2488 110 3 29 chr3 17391502 17391522 -210133056 + L1P5 LINE L1 5421 5440 -714 2008 94 83 0 chr3 17391522 17391798 -210132780 + AluSx SINE Alu 1 299 -13 2488 110 3 29 chr3 17391798 17392151 -210132427 + L1P5 LINE L1 5440 5784 -370 1391 137 24 0 chr3 17392151 17392356 -210132222 + AluSx SINE Alu 59 268 -44 1969 150 7 0 chr3 17392508 17392794 -210131784 + AluSx SINE Alu 4 291 -21 1930 163 0 20 chr3 17392956 17393257 -210131321 - AluJo SINE Alu -17 295 1 243 0 0 0 chr3 17393307 17393334 -210131244 + (TG)n Simple_repeat Simple_repeat 2 28 0 3141 139 29 0 chr3 17393408 17393777 -210130801 - L1PA14 LINE L1 -1 6160 5770 2321 101 0 0 chr3 17393777 17394073 -210130505 - AluSg SINE Alu -14 296 1 3141 139 29 0 chr3 17394073 17394219 -210130359 - L1PA14 LINE L1 -391 5770 5630 650 188 8 0 chr3 17394219 17394352 -210130226 + L1MB3 LINE L1 5198 5331 -815 549 176 0 0 chr3 17394352 17394437 -210130141 + FRAM SINE Alu 71 155 -21 4609 142 61 7 chr3 17394445 17395263 -210129315 + L1MB3 LINE L1 5320 6181 -2 496 284 60 40 chr3 17395380 17395630 -210128948 - MER112 DNA MER1_type -5 255 1 313 265 68 56 chr3 17395763 17396012 -210128566 - L1M4 LINE L1 -1487 4659 4408 848 162 0 7 chr3 17396044 17396186 -210128392 - FLAM_C SINE Alu -2 141 1 517 287 144 50 chr3 17396228 17396973 -210127605 - L1M4 LINE L1 -1810 4336 3522 308 285 81 49 chr3 17397054 17397300 -210127278 - L1M4 LINE L1 -2745 3401 3148 2169 99 7 14 chr3 17397313 17397607 -210126971 + AluSx SINE Alu 1 292 -20 261 194 24 10 chr3 17397635 17397698 -210126880 + L1MA8 LINE L1 5994 6059 -253 308 304 168 20 chr3 17398013 17398263 -210126315 - HAL1 LINE L1 -1409 1098 812 243 235 49 37 chr3 17398896 17398977 -210125601 - HAL1 LINE L1 -2413 94 13 189 0 0 0 chr3 17399730 17399751 -210124827 + (TTG)n Simple_repeat Simple_repeat 2 22 0 412 294 9 0 chr3 17399873 17399979 -210124599 + Charlie8 DNA MER1_type 92 198 -2219 701 101 74 81 chr3 17399979 17400137 -210124441 + MER63 DNA MER1_type 4 1651 -37 210 309 151 0 chr3 17400342 17400481 -210124097 + L3 LINE CR1 1050 1209 -368 1829 170 0 3 chr3 17401461 17401749 -210122829 + AluJb SINE Alu 1 287 -25 1862 91 4 0 chr3 17401874 17402116 -210122462 - AluSg/x SINE Alu 0 312 70 380 71 18 0 chr3 17402119 17402175 -210122403 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 235 241 126 0 chr3 17402215 17402302 -210122276 - MIR SINE MIR -70 192 95 303 98 0 0 chr3 17402427 17402468 -210122110 + Alu SINE Alu 1 41 -262 2168 122 10 0 chr3 17402468 17402772 -210121806 + AluSx SINE Alu 5 311 -1 2392 97 0 3 chr3 17402778 17403089 -210121489 + AluSg SINE Alu 1 310 0 993 140 27 0 chr3 17403674 17403824 -210120754 + AluJb SINE Alu 137 290 -22 2032 132 28 0 chr3 17404203 17404492 -210120086 - AluSx SINE Alu -15 297 1 563 237 0 6 chr3 17404508 17404681 -210119897 + CT-rich Low_complexity Low_complexity 2 173 0 246 340 19 19 chr3 17404687 17404790 -210119788 - L2 LINE L2 -26 3287 3185 780 293 37 28 chr3 17404896 17405315 -210119263 - L2 LINE L2 -169 3144 2713 2229 126 0 0 chr3 17405315 17405624 -210118954 - AluSx SINE Alu -3 309 1 780 293 37 28 chr3 17405624 17405685 -210118893 - L2 LINE L2 -600 2713 2654 873 127 6 73 chr3 17405690 17405823 -210118755 - LTR34 LTR ERV1 -542 157 35 2469 61 0 10 chr3 17405823 17406120 -210118458 - AluY SINE Alu -17 294 1 873 127 6 73 chr3 17406120 17406151 -210118427 - LTR34 LTR ERV1 -664 35 4 922 204 104 12 chr3 17406184 17406424 -210118154 - MLT1J2 LTR MaLR -123 327 66 397 288 70 41 chr3 17406517 17406760 -210117818 - L2 LINE L2 -830 2484 2235 805 259 50 86 chr3 17406936 17407079 -210117499 - L2 LINE L2 -4 3309 3162 2365 63 3 48 chr3 17407079 17407394 -210117184 + AluY SINE Alu 1 301 -10 805 259 50 86 chr3 17407394 17407406 -210117172 - L2 LINE L2 -151 3162 3151 2014 136 7 0 chr3 17407406 17407692 -210116886 + AluJo SINE Alu 4 291 -21 805 259 50 86 chr3 17407692 17407721 -210116857 - L2 LINE L2 -162 3151 3122 1689 165 0 4 chr3 17407721 17407981 -210116597 + AluJb SINE Alu 45 303 -9 805 259 50 86 chr3 17407981 17408319 -210116259 - L2 LINE L2 -191 3122 2804 263 319 36 7 chr3 17409396 17409534 -210115044 + LTR67 LTR ERVL 410 551 -6 2375 70 3 0 chr3 17409609 17409944 -210114634 - AluSp SINE Alu 0 336 1 495 311 42 42 chr3 17410554 17410747 -210113831 + MIR SINE MIR 13 205 -57 582 220 119 6 chr3 17411060 17411228 -210113350 + MER5A DNA MER1_type 3 189 0 461 191 10 13 chr3 17411654 17411754 -210112824 + MLT1J LTR MaLR 63 199 -265 1184 134 0 0 chr3 17411850 17412022 -210112556 + AluSg/x SINE Alu 135 306 -4 291 276 71 0 chr3 17412201 17412299 -210112279 + L2 LINE L2 3167 3271 -1 185 0 40 0 chr3 17412402 17412427 -210112151 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 696 269 20 0 chr3 17413067 17413268 -210111310 + MIR SINE MIR 1 205 -57 2172 123 7 3 chr3 17413461 17413761 -210110817 + AluSx SINE Alu 1 301 -11 401 192 40 139 chr3 17414134 17414171 -210110407 + L1MC4 LINE L1 7782 7821 -221 2460 84 0 0 chr3 17414171 17414469 -210110109 - AluSg1 SINE Alu -11 298 1 401 192 40 139 chr3 17414469 17414582 -210109996 + L1MC4 LINE L1 7821 7917 -125 524 251 21 122 chr3 17415696 17415854 -210108724 - MER112 DNA MER1_type 0 260 88 1662 159 3 36 chr3 17415854 17416156 -210108422 - AluJo SINE Alu -12 300 9 524 251 21 122 chr3 17416156 17416234 -210108344 - MER112 DNA MER1_type -172 88 55 1784 146 3 24 chr3 17416234 17416528 -210108050 - AluJo SINE Alu -24 288 1 524 251 21 122 chr3 17416528 17416577 -210108001 - MER112 DNA MER1_type -205 55 3 1911 131 3 37 chr3 17417343 17417640 -210106938 + AluSx SINE Alu 6 292 -20 1873 161 3 20 chr3 17418646 17418944 -210105634 + AluJb SINE Alu 1 293 -19 185 250 94 0 chr3 17419724 17419788 -210104790 + L3 LINE CR1 1050 1119 -458 2330 167 60 0 chr3 17420196 17420598 -210103980 + MSTB LTR MaLR 1 426 0 298 243 153 21 chr3 17420722 17420867 -210103711 - MIR SINE MIR -62 146 30 2019 123 0 60 chr3 17421449 17421765 -210102813 + AluSx SINE Alu 1 297 -15 450 150 0 0 chr3 17421798 17421878 -210102700 + FLAM_A SINE Alu 61 140 -2 1042 94 0 0 chr3 17423088 17423216 -210101362 + AluSq/x SINE Alu 6 133 -180 2430 86 0 6 chr3 17423220 17423535 -210101043 + AluSp SINE Alu 1 313 0 252 211 145 13 chr3 17423766 17423842 -210100736 + MER103 DNA DNA 3 88 -78 1903 41 5 0 chr3 17424838 17425059 -210099519 + AluY SINE Alu 77 298 -13 1794 153 3 42 chr3 17426166 17426474 -210098104 + AluJb SINE Alu 12 307 -5 1676 164 3 33 chr3 17426693 17426997 -210097581 + AluJo SINE Alu 5 299 -13 493 200 54 0 chr3 17427178 17427308 -210097270 + MIR SINE MIR 56 192 -70 1901 140 11 7 chr3 17427901 17428187 -210096391 + AluSx SINE Alu 1 287 -25 2274 108 0 3 chr3 17428277 17428582 -210095996 + AluSg SINE Alu 1 304 -6 2546 135 47 0 chr3 17428977 17429384 -210095194 - MSTB LTR MaLR 0 426 1 2277 108 3 0 chr3 17429939 17430235 -210094343 + AluSx SINE Alu 1 297 -15 2139 134 0 10 chr3 17430244 17430379 -210094199 + AluJb SINE Alu 1 136 -176 1929 84 42 90 chr3 17430379 17430689 -210093889 + AluY SINE Alu 1 295 -16 2139 134 0 10 chr3 17430689 17430858 -210093720 + AluJb SINE Alu 136 302 -10 183 297 242 11 chr3 17431704 17431795 -210092783 - MIR SINE MIR -81 127 16 251 28 28 0 chr3 17432676 17432712 -210091866 + (TA)n Simple_repeat Simple_repeat 1 37 0 982 128 0 0 chr3 17433529 17433662 -210090916 + AluSq/x SINE Alu 1 133 -179 186 156 0 0 chr3 17433664 17433709 -210090869 + A-rich Low_complexity Low_complexity 1 45 0 2573 47 7 0 chr3 17433974 17434271 -210090307 + AluY SINE Alu 1 299 -12 2352 97 3 0 chr3 17434452 17434751 -210089827 - AluSx SINE Alu -12 300 1 3437 211 9 8 chr3 17434754 17435139 -210089439 + MER82 DNA MER2_type 8 396 -257 2478 81 7 0 chr3 17435139 17435447 -210089131 + AluSq SINE Alu 1 310 -3 3437 211 9 8 chr3 17435447 17435705 -210088873 + MER82 DNA MER2_type 396 652 -1 546 187 0 9 chr3 17436195 17436302 -210088276 - MER82 DNA MER2_type -170 483 378 712 120 14 78 chr3 17436608 17436758 -210087820 - FLAM_C SINE Alu 0 141 1 265 272 88 44 chr3 17436955 17437091 -210087487 - MIR SINE MIR -89 173 32 182 298 67 52 chr3 17437419 17437577 -210087001 - MIR SINE MIR -54 154 20 316 296 130 0 chr3 17441043 17441158 -210083420 + MIR SINE MIR 21 150 -112 264 278 93 25 chr3 17441736 17441898 -210082680 + L1MB8 LINE L1 5769 5941 -237 1271 127 5 39 chr3 17441956 17442016 -210082562 + AluSg/x SINE Alu 79 140 -172 2162 105 21 0 chr3 17442016 17442301 -210082277 + AluSg SINE Alu 1 291 -19 1271 127 5 39 chr3 17442301 17442445 -210082133 + AluSg/x SINE Alu 140 276 -36 245 29 0 29 chr3 17442446 17442481 -210082097 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2057 153 0 3 chr3 17442625 17442938 -210081640 + AluJo SINE Alu 1 312 0 295 230 46 0 chr3 17443165 17443252 -210081326 + L1MC5 LINE L1 7771 7861 -100 225 0 0 0 chr3 17443347 17443372 -210081206 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2316 104 10 0 chr3 17443382 17443689 -210080889 - AluSx SINE Alu -2 310 1 2142 112 0 60 chr3 17443691 17444022 -210080556 - AluSx SINE Alu -1 311 1 290 220 68 96 chr3 17444353 17444530 -210080048 + MER5A DNA MER1_type 18 189 0 395 284 157 0 chr3 17444661 17444795 -210079783 - MIR SINE MIR -95 167 13 346 299 39 95 chr3 17444912 17445250 -210079328 - L2 LINE L2 -5 3267 2949 542 110 12 0 chr3 17445464 17445546 -210079032 + MSTA LTR MaLR 1 83 -345 296 345 123 6 chr3 17445854 17446025 -210078553 - MIR SINE MIR -19 243 53 312 333 37 7 chr3 17446265 17446400 -210078178 + MIR SINE MIR 50 188 -74 300 321 138 12 chr3 17447585 17447816 -210076762 + L2 LINE L2 2560 2820 -494 342 232 135 27 chr3 17447816 17447976 -210076602 + MIR SINE MIR 2 186 -22 230 122 41 0 chr3 17449209 17449258 -210075320 + (TTTG)n Simple_repeat Simple_repeat 4 54 0 788 153 0 22 chr3 17449961 17450098 -210074480 + AluJo SINE Alu 1 134 -178 2215 99 3 3 chr3 17450440 17450744 -210073834 - AluSx SINE Alu -8 304 1 4805 170 53 59 chr3 17450832 17451975 -210072603 - L1MB4 LINE L1 -8 6172 5023 2470 83 0 0 chr3 17451975 17452277 -210072301 + AluY SINE Alu 1 302 -9 4805 170 53 59 chr3 17452277 17453013 -210071565 - L1MB4 LINE L1 -1157 5023 4314 1622 146 97 0 chr3 17453013 17453322 -210071256 - MER44D DNA MER2_type 0 609 1 4805 170 53 59 chr3 17453322 17453363 -210071215 - L1MB4 LINE L1 -1866 4314 4274 1285 193 30 4 chr3 17453362 17453632 -210070946 - L1M4 LINE L1 -645 5608 5332 * 2132 145 0 0 chr3 17453686 17453989 -210070589 + AluSx SINE Alu 1 303 -9 2074 120 0 34 chr3 17454000 17454324 -210070254 + AluSp SINE Alu 1 313 0 870 237 58 19 chr3 17454384 17454696 -210069882 - L1M4 LINE L1 -4109 2287 1964 2361 57 29 0 chr3 17454764 17455044 -210069534 + AluY SINE Alu 1 288 -23 2401 232 54 23 chr3 17455045 17455773 -210068805 + L1M4c LINE L1 776 1525 -4859 1688 159 31 70 chr3 17455773 17456157 -210068421 + L1ME2 LINE L1 5791 6159 -5 239 288 124 7 chr3 17456262 17456415 -210068163 + MIR SINE MIR 79 249 -13 790 148 7 22 chr3 17456524 17456659 -210067919 - FLAM_C SINE Alu 0 133 1 311 278 130 68 chr3 17456765 17456927 -210067651 + MER5B DNA MER1_type 1 172 -6 207 0 0 0 chr3 17457197 17457220 -210067358 + (CA)n Simple_repeat Simple_repeat 2 24 0 1887 230 8 44 chr3 17457274 17457748 -210066830 - MLT2B1 LTR ERVL -63 457 1 962 239 16 3 chr3 17458573 17458834 -210065744 + L1M4 LINE L1 4776 5039 -1107 1775 150 34 17 chr3 17458859 17459153 -210065425 + AluJb SINE Alu 1 299 -13 911 286 40 19 chr3 17459153 17459468 -210065110 + L1MA9 LINE L1 5958 6282 -30 880 238 46 19 chr3 17459475 17459798 -210064780 + L1M4 LINE L1 4272 4603 -1543 1067 247 103 47 chr3 17459815 17460321 -210064257 + L1M4 LINE L1 4673 5206 -940 954 309 98 48 chr3 17460296 17460611 -210063967 + L1M4 LINE L1 4149 4447 -1699 * 801 163 0 0 chr3 17460611 17460734 -210063844 + FLAM_A SINE Alu 1 123 -10 954 309 98 48 chr3 17460734 17461242 -210063336 + L1M4 LINE L1 4447 5013 -1133 243 310 110 25 chr3 17461391 17461672 -210062906 + L1M4 LINE L1 3967 4271 -1875 2142 107 0 4 chr3 17461780 17462060 -210062518 + AluSg SINE Alu 1 279 -31 2007 118 51 0 chr3 17462092 17462388 -210062190 + AluSx SINE Alu 1 311 -1 777 193 91 42 chr3 17462478 17462743 -210061835 - L2 LINE L2 -5 3308 3031 311 304 59 20 chr3 17462783 17463051 -210061527 + L1M4 LINE L1 4554 4833 -1313 288 267 114 88 chr3 17463144 17463656 -210060922 - L1M4 LINE L1 -1936 4210 3686 1317 219 58 20 chr3 17463703 17463829 -210060749 + Charlie1b DNA MER1_type 10 130 -2631 2089 138 7 0 chr3 17463829 17464126 -210060452 + AluSx SINE Alu 1 299 -13 1317 219 58 20 chr3 17464126 17464424 -210060154 + Charlie1b DNA MER1_type 130 501 -22 237 258 32 0 chr3 17465055 17465117 -210059461 + L3 LINE CR1 1512 1575 -2 4943 124 8 0 chr3 17466256 17466979 -210057599 - L1PA16 LINE L1 -9 6157 5429 2359 90 7 0 chr3 17467122 17467421 -210057157 - AluSx SINE Alu -11 301 1 2156 106 0 0 chr3 17468121 17468405 -210056173 + AluSc SINE Alu 18 301 -8 788 153 0 22 chr3 17468747 17468884 -210055694 - AluJo SINE Alu -178 134 1 193 118 39 0 chr3 17469585 17469636 -210054942 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 342 232 135 27 chr3 17470869 17471029 -210053549 - MIR SINE MIR -22 186 2 300 321 138 12 chr3 17471029 17471260 -210053318 - L2 LINE L2 -494 2820 2560 477 307 56 28 chr3 17472390 17472641 -210051937 + MARNA DNA Mariner 22 279 -307 307 215 208 54 chr3 17472805 17472954 -210051624 + MARNA DNA Mariner 373 544 -42 514 286 76 5 chr3 17473353 17473538 -210051040 - MIR SINE MIR -64 198 1 705 288 121 21 chr3 17473996 17474336 -210050242 - L1MC4a LINE L1 -361 5809 5454 792 271 45 20 chr3 17475273 17475517 -210049061 + MIR SINE MIR 3 252 -10 1782 204 50 72 chr3 17475649 17476203 -210048375 + MER34 LTR ERV1 1 542 0 240 266 0 48 chr3 17477018 17477142 -210047436 + (CA)n Simple_repeat Simple_repeat 2 119 0 236 247 136 52 chr3 17478580 17478734 -210045844 + MIR3 SINE MIR 42 208 0 2001 93 34 0 chr3 17478790 17479088 -210045490 - AluSg SINE Alu 0 308 2 207 0 0 0 chr3 17480825 17480848 -210043730 + (CA)n Simple_repeat Simple_repeat 2 24 0 225 94 0 0 chr3 17481130 17481162 -210043416 + (GGA)n Simple_repeat Simple_repeat 2 33 0 204 259 0 35 chr3 17481690 17481748 -210042830 + MIR SINE MIR 86 141 -67 218 301 54 11 chr3 17486984 17487077 -210037501 - MIR SINE MIR -6 256 160 512 272 163 32 chr3 17487432 17487678 -210036900 + L3 LINE CR1 1298 1575 -2 1867 136 11 0 chr3 17488371 17488657 -210035921 + AluJb SINE Alu 1 289 -23 389 323 106 22 chr3 17488702 17488928 -210035650 + L3 LINE CR1 923 1167 -410 275 169 65 52 chr3 17488943 17489020 -210035558 + MIR SINE MIR 84 161 -101 357 314 146 11 chr3 17489022 17489207 -210035371 + L3 LINE CR1 1361 1570 -7 222 37 0 0 chr3 17489219 17489246 -210035332 + (T)n Simple_repeat Simple_repeat 1 27 0 298 256 107 74 chr3 17489665 17489786 -210034792 + MIR SINE MIR 24 148 -114 1173 98 186 0 chr3 17491192 17491386 -210033192 + MER30 DNA MER1_type 1 230 0 786 303 174 31 chr3 17491572 17492090 -210032488 - L3 LINE CR1 -4 1573 982 625 195 134 12 chr3 17493424 17493588 -210030990 - MER97a DNA MER1_type? -710 184 1 595 302 201 17 chr3 17493591 17493837 -210030741 - L2 LINE L2 -18 3295 3095 2129 84 7 3 chr3 17493837 17494123 -210030455 + AluSc SINE Alu 1 287 -22 595 302 201 17 chr3 17494123 17494220 -210030358 - L2 LINE L2 -218 3095 2889 1384 274 159 21 chr3 17494252 17494697 -210029881 - L2 LINE L2 -899 2415 1862 2052 105 21 0 chr3 17494697 17494982 -210029596 - AluSg SINE Alu -19 291 1 1384 274 159 21 chr3 17494982 17495145 -210029433 - L2 LINE L2 -1452 1862 1723 191 200 432 11 chr3 17495159 17495254 -210029324 - L2 LINE L2 -1737 1577 1443 1246 277 51 31 chr3 17495762 17496254 -210028324 + MER77 LTR ERV1 52 599 -6 742 216 47 0 chr3 17496345 17496493 -210028085 - MIR3 SINE MIR -21 187 33 457 315 14 14 chr3 17496854 17496997 -210027581 - MIR3 SINE MIR -53 155 13 362 254 16 22 chr3 17497644 17497795 -210026783 - MIR SINE MIR -76 132 3 293 313 35 26 chr3 17497844 17497959 -210026619 - MIR SINE MIR -63 145 30 239 247 14 55 chr3 17499415 17499488 -210025090 - MIR3 SINE MIR -37 171 102 447 281 68 14 chr3 17499739 17499885 -210024693 + MIR3 SINE MIR 18 171 -37 2468 163 5 0 chr3 17500543 17500948 -210023630 - MSTB1-int LTR MaLR -1230 421 15 1048 110 7 13 chr3 17500951 17501105 -210023473 - MSTB1 LTR MaLR -4 428 276 284 250 12 50 chr3 17501945 17502025 -210022553 + MIR SINE MIR 69 145 -117 284 310 70 0 chr3 17502118 17502218 -210022360 + MIR SINE MIR 34 140 -68 289 385 37 0 chr3 17502615 17502724 -210021854 - MIR SINE MIR -61 147 35 180 294 206 29 chr3 17502864 17502966 -210021612 + L2 LINE L2 3128 3247 -25 2178 92 7 3 chr3 17503337 17503641 -210020937 + AluSc SINE Alu 5 309 0 1767 143 42 0 chr3 17504536 17504822 -210019756 - AluJb SINE Alu -14 298 1 248 338 40 71 chr3 17504972 17505170 -210019408 - L2 LINE L2 -16 3256 3065 2412 62 0 7 chr3 17505350 17505658 -210018920 - AluY SINE Alu -5 306 1 1176 234 87 36 chr3 17505907 17506322 -210018256 - Charlie4a DNA MER1_type -34 474 39 477 202 65 16 chr3 17507157 17507281 -210017297 - MIR3 SINE MIR -28 180 51 525 257 99 20 chr3 17507841 17507993 -210016585 + MIR3 SINE MIR 15 178 -30 418 239 172 8 chr3 17508276 17508410 -210016168 - MIR3 SINE MIR -23 185 30 2246 109 0 0 chr3 17508544 17508856 -210015722 - AluSx SINE Alu 0 312 1 203 235 12 35 chr3 17509286 17509371 -210015207 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 580 318 74 29 chr3 17510348 17510659 -210013919 + L2 LINE L2 2945 3269 -3 342 339 136 39 chr3 17511939 17512196 -210012382 - L3 LINE CR1 -9 1568 1287 190 283 170 9 chr3 17512491 17512597 -210011981 - L2 LINE L2 0 3272 3150 289 277 18 54 chr3 17512785 17512897 -210011681 - L2 LINE L2 -21 3251 3144 293 348 79 77 chr3 17513017 17513460 -210011118 + L2 LINE L2 2827 3270 -2 364 0 0 0 chr3 17513545 17513586 -210010992 + 5S rRNA rRNA 2 42 -79 336 341 190 19 chr3 17513717 17513928 -210010650 - MIR SINE MIR -13 249 3 204 266 94 78 chr3 17514344 17514472 -210010106 - L2 LINE L2 -1 3312 3183 367 290 160 20 chr3 17514509 17514709 -210009869 - MIR SINE MIR -4 258 31 232 301 173 30 chr3 17515643 17515776 -210008802 - L3 LINE CR1 -1 1576 1425 260 282 0 59 chr3 17517438 17517523 -210007055 - L2 LINE L2 -3 3310 3231 294 298 116 7 chr3 17517614 17517761 -210006817 - MIR SINE MIR -64 144 21 492 253 81 46 chr3 17518062 17518236 -210006342 - MIR3 SINE MIR -14 194 15 476 265 27 34 chr3 17518553 17518700 -210005878 + MIR3 SINE MIR 15 160 -48 307 306 45 32 chr3 17518953 17519110 -210005468 - MIR3 SINE MIR -14 194 36 2187 87 3 7 chr3 17520487 17520785 -210003793 - AluY SINE Alu -14 297 1 324 176 0 0 chr3 17520847 17520898 -210003680 - MIR SINE MIR -99 163 113 318 50 0 0 chr3 17521388 17521428 -210003150 + (CA)n Simple_repeat Simple_repeat 2 41 0 409 201 153 35 chr3 17522008 17522152 -210002426 + MIR SINE MIR 77 237 -25 254 186 0 0 chr3 17523026 17523069 -210001509 - MIR3 SINE MIR -30 178 136 1485 200 7 0 chr3 17523077 17523362 -210001216 - AluJo SINE Alu -25 287 1 735 194 0 0 chr3 17523362 17523486 -210001092 - AluJo SINE Alu -177 135 12 1932 128 3 32 chr3 17523565 17523878 -210000700 - AluSx SINE Alu -8 304 1 3652 152 9 9 chr3 17524700 17525331 -209999247 + L1PB4 LINE L1 5526 6156 0 214 368 63 0 chr3 17525956 17526051 -209998527 + MIR SINE MIR 156 256 -6 495 280 17 43 chr3 17526808 17527032 -209997546 - MIR SINE MIR -41 221 4 348 284 25 81 chr3 17527080 17527277 -209997301 + MIR SINE MIR 19 204 -58 394 333 57 8 chr3 17528050 17528173 -209996405 + MIR SINE MIR 16 144 -64 433 292 102 42 chr3 17528942 17529178 -209995400 - MIR SINE MIR 0 262 13 206 211 0 179 chr3 17529687 17529782 -209994796 + MIR3 SINE MIR 102 179 -29 270 295 86 23 chr3 17529906 17530093 -209994485 - MIR SINE MIR -22 240 49 287 322 44 0 chr3 17530584 17530674 -209993904 + MIR SINE MIR 21 114 -148 420 292 98 81 chr3 17530871 17531268 -209993310 - L1MC4a LINE L1 -1884 5924 5521 1863 151 0 7 chr3 17531351 17531649 -209992929 - AluJo SINE Alu -12 300 5 446 302 32 16 chr3 17532103 17532229 -209992349 + MIR SINE MIR 19 146 -62 304 266 0 0 chr3 17532245 17532309 -209992269 - MIR SINE MIR -16 246 183 298 282 95 95 chr3 17533921 17534173 -209990405 - L2 LINE L2 -111 3161 2910 500 253 40 118 chr3 17534300 17534494 -209990084 - L1MC5 LINE L1 -86 7875 7710 1059 170 60 13 chr3 17534494 17534729 -209989849 - L1MB4 LINE L1 -3 6177 5932 500 253 40 118 chr3 17534729 17534830 -209989748 - L1MC5 LINE L1 -251 7710 7603 223 312 78 57 chr3 17534834 17534975 -209989603 - L2 LINE L2 -560 2754 2611 311 299 57 32 chr3 17536147 17536296 -209988282 - MIR SINE MIR -67 141 40 802 181 0 0 chr3 17536446 17536636 -209987942 + FLAM_A SINE Alu 1 190 0 765 273 0 44 chr3 17537393 17537576 -209987002 - MER91A DNA MER1_type -21 175 1 2087 215 68 0 chr3 17537927 17538351 -209986227 + MLT2B1 LTR ERVL 1 453 -67 241 275 0 15 chr3 17538351 17538482 -209986096 + (CA)n Simple_repeat Simple_repeat 1 129 0 2065 132 46 9 chr3 17538482 17538830 -209985748 - MLT1A2 LTR MaLR -13 361 1 473 275 163 6 chr3 17539119 17539279 -209985299 + MIR SINE MIR 7 191 -71 303 174 0 71 chr3 17539485 17539583 -209984995 + T-rich Low_complexity Low_complexity 3 93 0 405 224 58 83 chr3 17539586 17539742 -209984836 + L2 LINE L2 3162 3313 0 274 255 117 21 chr3 17540086 17540180 -209984398 - MIR3 SINE MIR -38 170 68 1927 144 7 3 chr3 17540369 17540660 -209983918 + AluJb SINE Alu 1 292 -20 218 277 229 0 chr3 17541149 17541232 -209983346 - MIR3 SINE MIR -29 179 78 810 228 101 13 chr3 17541785 17542022 -209982556 - MIR SINE MIR 0 262 5 513 328 155 45 chr3 17542635 17543099 -209981479 - L3 LINE CR1 -28 1549 1035 2139 88 50 3 chr3 17543313 17543596 -209980982 + AluSg SINE Alu 1 296 -14 227 261 127 22 chr3 17544005 17544139 -209980439 - L1MB4 LINE L1 -363 5799 5652 608 215 54 8 chr3 17544535 17544584 -209979994 - AluJo SINE Alu -175 137 92 1951 131 7 7 chr3 17544584 17544866 -209979712 - AluJb SINE Alu -12 300 19 608 215 54 8 chr3 17544866 17544946 -209979632 - AluJo SINE Alu -220 92 2 727 244 0 0 chr3 17544994 17545125 -209979453 - FLAM_A SINE Alu -11 131 1 893 238 113 51 chr3 17545125 17545776 -209978802 - L1MEd LINE L1 -880 1610 815 1009 298 148 20 chr3 17545824 17546311 -209978267 - L1MEd LINE L1 -5497 622 74 2238 178 75 5 chr3 17546442 17546857 -209977721 + MLT2C2 LTR ERVL 1 444 -20 583 158 26 20 chr3 17546858 17547010 -209977568 + CT-rich Low_complexity Low_complexity 3 155 0 239 157 118 0 chr3 17547013 17547064 -209977514 + MLT2C1 LTR ERVL 341 397 0 186 185 185 37 chr3 17547133 17547187 -209977391 - L2 LINE L2 -94 3219 3158 554 340 93 42 chr3 17547229 17547585 -209976993 - L2 LINE L2 0 3272 2899 281 295 21 21 chr3 17547672 17547767 -209976811 - L2 LINE L2 -212 3060 2966 571 259 30 0 chr3 17548335 17548470 -209976108 + MIR3 SINE MIR 21 159 -49 187 316 35 0 chr3 17548638 17548695 -209975883 + MIR3 SINE MIR 150 208 0 345 371 57 7 chr3 17549131 17549271 -209975307 - L2 LINE L2 -1 3271 3125 1051 187 123 43 chr3 17549556 17549856 -209974722 + MER33 DNA MER1_type 1 324 0 276 208 50 0 chr3 17550106 17550188 -209974390 + MIR SINE MIR 88 143 -65 832 149 8 0 chr3 17550210 17550331 -209974247 - FLAM_C SINE Alu -21 122 1 365 266 56 49 chr3 17550350 17550493 -209974085 - MIR SINE MIR -40 222 79 187 294 0 0 chr3 17551203 17551254 -209973324 + L2 LINE L2 3174 3224 -48 1720 192 3 7 chr3 17551562 17551870 -209972708 + AluJo SINE Alu 1 307 -5 276 300 60 30 chr3 17552679 17552779 -209971799 - L2 LINE L2 -19 3253 3151 270 222 30 121 chr3 17552774 17552873 -209971705 - L2 LINE L2 -8 3264 3175 * 241 340 14 0 chr3 17553371 17553456 -209971122 + MIR SINE MIR 36 121 -87 4515 167 53 22 chr3 17554001 17555167 -209969411 + L1MB5 LINE L1 4969 6168 -6 213 363 20 20 chr3 17555609 17555711 -209968867 + L2 LINE L2 2986 3087 -185 261 317 55 56 chr3 17555833 17556045 -209968533 + MIR SINE MIR 4 223 -39 21 0 0 0 chr3 17556271 17556292 -209968286 + AT_rich Low_complexity Low_complexity 1 21 0 2434 107 67 12 chr3 17557213 17557558 -209967020 - THE1B LTR MaLR 0 364 1 2427 68 6 19 chr3 17557558 17557882 -209966696 - THE1B-int LTR MaLR 0 1580 1261 * 3028 120 263 2 chr3 17557851 17558392 -209966186 + THE1-int LTR MaLR 591 1272 -308 1795 166 10 3 chr3 17558414 17558703 -209965875 - AluJo SINE Alu -19 293 3 236 288 115 58 chr3 17558705 17558844 -209965734 - MIR SINE MIR -114 148 2 203 171 49 0 chr3 17559023 17559064 -209965514 - MIR SINE MIR -6 256 214 392 275 174 12 chr3 17559232 17559399 -209965179 - MIR SINE MIR -60 202 9 233 250 98 45 chr3 17560219 17560331 -209964247 + MIR SINE MIR 20 137 -71 1801 155 72 0 chr3 17560392 17560683 -209963895 - AluJb SINE Alu 0 312 1 807 167 0 0 chr3 17560872 17560986 -209963592 - FLAM_C SINE Alu -25 118 5 225 65 0 0 chr3 17561575 17561606 -209962972 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 202 11 146 chr3 17562055 17562144 -209962434 - L2 LINE L2 -16 3297 3221 2179 178 121 20 chr3 17562144 17562701 -209961877 + MLT1E2 LTR MaLR 1 624 0 1873 152 0 0 chr3 17563254 17563530 -209961048 - AluJb SINE Alu -36 276 1 1185 128 6 0 chr3 17563629 17563824 -209960754 - AluY SINE Alu 0 307 112 1303 145 0 0 chr3 17563840 17564033 -209960545 - AluSx SINE Alu -119 193 1 547 209 80 70 chr3 17564226 17564266 -209960312 - MIR SINE MIR -60 202 164 2417 96 0 0 chr3 17564266 17564569 -209960009 - AluSx SINE Alu -9 303 1 547 209 80 70 chr3 17564569 17564715 -209959863 - MIR SINE MIR -98 164 14 2514 59 10 0 chr3 17565244 17565551 -209959027 - AluY SINE Alu -1 310 1 1836 151 0 18 chr3 17565680 17565965 -209958613 - AluJo SINE Alu -32 280 1 2271 113 0 0 chr3 17566446 17566746 -209957832 - AluSx SINE Alu -12 300 1 182 277 123 0 chr3 17567347 17567412 -209957166 - L2 LINE L2 -14 3258 3186 1543 129 179 150 chr3 17567421 17567912 -209956666 - LTR12 LTR ERV1 -133 1523 100 289 211 0 0 chr3 17567912 17567964 -209956614 - LTR30 LTR ERV1 -670 52 1 1979 128 0 52 chr3 17567980 17568308 -209956270 - AluJo SINE Alu -1 311 1 1697 146 10 31 chr3 17568498 17568792 -209955786 + AluJb SINE Alu 1 288 -24 2178 98 0 44 chr3 17568796 17569111 -209955467 + AluY SINE Alu 1 301 -10 1626 183 30 17 chr3 17569724 17570024 -209954554 - AluJo SINE Alu -8 304 1 2084 101 52 3 chr3 17570065 17570352 -209954226 - AluSx SINE Alu -11 301 1 291 247 276 6 chr3 17571351 17571521 -209953057 + MIR SINE MIR 39 254 -8 562 315 28 5 chr3 17571730 17571937 -209952641 - MIR SINE MIR -12 250 38 2497 81 3 0 chr3 17571937 17572246 -209952332 + AluSp SINE Alu 1 310 -3 584 225 81 17 chr3 17572333 17572506 -209952072 - MIR SINE MIR 0 262 79 348 348 66 57 chr3 17573153 17573590 -209950988 - L2 LINE L2 -2 3270 2830 2302 88 3 0 chr3 17573693 17574006 -209950572 - AluSx SINE Alu 0 314 1 2131 123 7 7 chr3 17574017 17574325 -209950253 - AluSg SINE Alu -2 308 1 196 203 0 149 chr3 17574651 17574725 -209949853 - L2 LINE L2 -1 3271 3209 2314 103 0 0 chr3 17575048 17575365 -209949213 + AluSq SINE Alu 1 317 0 180 308 58 0 chr3 17576394 17576446 -209948132 - L2 LINE L2 0 3272 3218 2064 108 36 16 chr3 17576962 17577268 -209947310 + AluSx SINE Alu 1 312 0 492 277 50 21 chr3 17577274 17577516 -209947062 - L1M4 LINE L1 -3435 3209 2961 810 179 33 20 chr3 17577558 17577709 -209946869 + FRAM SINE Alu 20 172 -4 263 261 133 9 chr3 17577738 17577964 -209946614 - L1M4 LINE L1 -3763 2881 2628 216 304 0 0 chr3 17578206 17578262 -209946316 - MER5A DNA MER1_type -6 183 128 981 239 26 4 chr3 17578664 17578890 -209945688 + MIR SINE MIR 32 262 0 257 291 13 0 chr3 17578893 17578984 -209945594 - L1M4 LINE L1 -915 2090 1960 341 169 26 39 chr3 17578994 17579071 -209945507 - MLT1I LTR MaLR 0 409 334 4579 182 55 27 chr3 17580213 17581867 -209942711 - L1MB7 LINE L1 -19 6401 4686 2616 52 0 3 chr3 17581872 17582179 -209942399 - AluY SINE Alu -5 306 1 3930 218 59 17 chr3 17582181 17582980 -209941598 - L1MB7 LINE L1 -3022 3360 2483 225 0 0 0 chr3 17582980 17583005 -209941573 + (TA)n Simple_repeat Simple_repeat 1 25 0 3930 218 59 17 chr3 17583005 17583505 -209941073 - L1MB7 LINE L1 -3899 2483 2006 2430 192 69 17 chr3 17583503 17583842 -209940736 - L1M4 LINE L1 -4677 1969 1649 * 5489 41 0 44 chr3 17583842 17584228 -209940350 - L1PA5 LINE L1 0 6154 5809 2458 87 0 0 chr3 17584228 17584537 -209940041 - AluY SINE Alu -2 309 1 5489 41 0 44 chr3 17584537 17584828 -209939750 - L1PA5 LINE L1 -345 5809 5507 2430 192 69 17 chr3 17584828 17585272 -209939306 - L1M4 LINE L1 -4997 1649 1172 1146 284 155 51 chr3 17585571 17586288 -209938290 - L2 LINE L2 -597 2717 1895 2185 103 0 16 chr3 17586288 17586600 -209937978 - AluY SINE Alu -4 307 1 1146 284 155 51 chr3 17586600 17586739 -209937839 - L2 LINE L2 -1419 1895 1772 514 293 224 33 chr3 17586722 17587146 -209937432 + L2 LINE L2 2034 2538 -776 * 391 270 81 64 chr3 17587160 17587390 -209937188 - MIR SINE MIR -29 233 5 277 310 77 13 chr3 17587363 17587518 -209937060 + MIR SINE MIR 89 253 -9 * 209 217 0 109 chr3 17587583 17587675 -209936903 - L2 LINE L2 -79 3234 3153 2207 112 10 3 chr3 17587708 17588003 -209936575 + AluSx SINE Alu 1 297 -15 358 291 64 0 chr3 17588725 17588835 -209935743 - MIR3 SINE MIR -5 203 87 224 281 64 94 chr3 17589077 17589248 -209935330 - L2 LINE L2 -6 3266 3101 183 308 168 43 chr3 17589305 17589513 -209935065 + L2 LINE L2 2953 3186 -86 319 292 22 22 chr3 17590257 17590346 -209934232 + MIR SINE MIR 38 126 -82 469 308 0 27 chr3 17591286 17591432 -209933146 - MIR3 SINE MIR -51 157 16 233 356 85 27 chr3 17591834 17592022 -209932556 - MIR3 SINE MIR -1 207 9 21 36 0 0 chr3 17592200 17592228 -209932350 + AT_rich Low_complexity Low_complexity 1 28 0 604 226 0 0 chr3 17592228 17592334 -209932244 - FLAM_A SINE Alu -36 106 1 10308 208 64 36 chr3 17592334 17592372 -209932206 - L1MA7 LINE L1 0 7710 7675 2604 79 37 8 chr3 17592372 17592725 -209931853 + THE1B LTR MaLR 1 363 -1 10308 208 64 36 chr3 17592725 17594103 -209930475 - L1MA7 LINE L1 -35 7675 6336 1259 164 23 18 chr3 17594103 17594322 -209930256 - AluJb SINE Alu -23 289 70 10308 208 64 36 chr3 17594322 17596466 -209928112 - L1MA7 LINE L1 -1374 6336 3787 312 91 0 0 chr3 17596466 17596510 -209928068 + (TG)n Simple_repeat Simple_repeat 2 45 0 10308 208 64 36 chr3 17596510 17597452 -209927126 - L1MA7 LINE L1 -3923 3787 2872 21 36 0 0 chr3 17597497 17597525 -209927053 + AT_rich Low_complexity Low_complexity 1 28 0 450 327 70 55 chr3 17597601 17597858 -209926720 + L3 LINE CR1 1259 1519 -58 259 314 58 73 chr3 17598521 17598551 -209926027 + L3 LINE CR1 1303 1332 -245 2191 128 0 0 chr3 17598551 17598855 -209925723 + AluSx SINE Alu 1 304 -8 259 314 58 73 chr3 17598855 17598961 -209925617 + L3 LINE CR1 1332 1437 -140 295 299 57 93 chr3 17599205 17599331 -209925247 - L3 LINE CR1 -86 1491 1373 3003 173 45 2 chr3 17599331 17599868 -209924710 + MER68 LTR ERV1 3 562 0 295 299 57 93 chr3 17599868 17599935 -209924643 - L3 LINE CR1 -204 1373 1305 16923 134 12 0 chr3 17600969 17604543 -209920035 + L1PA10 LINE L1 2557 6159 -9 551 261 149 5 chr3 17605089 17605277 -209919301 + MIR SINE MIR 47 261 -1 1098 233 4 45 chr3 17605697 17605963 -209918615 + MIR SINE MIR 2 256 -6 325 315 57 12 chr3 17606609 17606778 -209917800 + MIR SINE MIR 17 197 -65 952 284 107 21 chr3 17607521 17608182 -209916396 + L1MB8 LINE L1 2113 2830 -3316 2095 277 119 36 chr3 17608201 17609207 -209915371 + HAL1 LINE L1 3 1092 -1415 * 2375 211 33 7 chr3 17609190 17609759 -209914819 + L1MB8 LINE L1 4807 5390 -756 3625 164 18 45 chr3 17611711 17611766 -209912812 + L1MB8 LINE L1 5390 5445 -733 1733 178 26 13 chr3 17611766 17612070 -209912508 + AluJo SINE Alu 4 311 -1 3625 164 18 45 chr3 17612070 17612316 -209912262 + L1MB8 LINE L1 5445 5696 -482 2295 83 0 20 chr3 17612316 17612617 -209911961 + AluSg SINE Alu 1 295 -15 3625 164 18 45 chr3 17612617 17613076 -209911502 + L1MB8 LINE L1 5696 6131 -47 1854 226 43 25 chr3 17613106 17613664 -209910914 + HAL1 LINE L1 1087 1654 -853 237 65 0 0 chr3 17613774 17613805 -209910773 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1663 178 11 7 chr3 17613805 17614086 -209910492 - AluJb SINE Alu -30 282 1 24 0 0 0 chr3 17614093 17614117 -209910461 + AT_rich Low_complexity Low_complexity 1 24 0 200 309 12 37 chr3 17614236 17614317 -209910261 - L2 LINE L2 -1605 1709 1631 1730 131 71 41 chr3 17614698 17615117 -209909461 + THE1C LTR MaLR 1 428 0 4627 168 47 33 chr3 17615520 17615997 -209908581 - L1MB7 LINE L1 -15 6169 5700 4855 109 16 15 chr3 17615997 17616748 -209907830 - L1PA16 LINE L1 -9 6157 5406 4627 168 47 33 chr3 17616748 17617496 -209907082 - L1MB7 LINE L1 -484 5700 5112 2268 139 179 101 chr3 17617506 17617900 -209906678 - L1MC3 LINE L1 -194 8009 7647 232 219 0 31 chr3 17617900 17617964 -209906614 - MLT1H LTR MaLR -401 148 87 2268 139 179 101 chr3 17617964 17618187 -209906391 - L1MC3 LINE L1 -556 7647 7276 * 5790 147 37 6 chr3 17618178 17619199 -209905379 - L1MC3 LINE L1 -1160 7043 5991 4972 219 55 15 chr3 17619203 17620544 -209904034 - L1MC3 LINE L1 -849 5715 4321 4784 213 49 16 chr3 17620565 17621956 -209902622 - L1MC3 LINE L1 -4850 1195 1 5091 125 8 26 chr3 17622019 17622817 -209901761 + LTR39 LTR ERV1 1 783 0 252 238 59 50 chr3 17623839 17623940 -209900638 - MER5A DNA MER1_type -80 109 8 303 49 0 0 chr3 17624535 17624576 -209900002 + (CA)n Simple_repeat Simple_repeat 2 42 0 2152 98 0 4 chr3 17624576 17624851 -209899727 - AluSx SINE Alu -38 274 1 342 222 39 78 chr3 17625458 17625611 -209898967 - L1ME3 LINE L1 -55 6107 5961 800 229 132 49 chr3 17625705 17626054 -209898524 - L1MC5 LINE L1 -436 7525 7148 638 293 29 10 chr3 17626053 17626360 -209898218 + L1M4 LINE L1 4311 4623 -1523 * 460 256 141 34 chr3 17626410 17626887 -209897691 - L1M4 LINE L1 -3053 3093 2566 910 294 91 23 chr3 17626887 17627272 -209897306 + HAL1 LINE L1 1498 1908 -599 302 240 53 53 chr3 17627777 17627927 -209896651 + LTR16C LTR ERVL 327 476 -15 24 0 0 0 chr3 17628006 17628030 -209896548 + AT_rich Low_complexity Low_complexity 1 24 0 206 108 54 0 chr3 17628044 17628081 -209896497 + (TTTAA)n Simple_repeat Simple_repeat 4 42 0 348 270 70 43 chr3 17628156 17628341 -209896237 + HAL1 LINE L1 2027 2216 -291 216 0 0 0 chr3 17628409 17628433 -209896145 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2310 87 0 0 chr3 17628436 17628722 -209895856 - AluSg SINE Alu -24 286 1 418 265 62 39 chr3 17628728 17628884 -209895694 + MIR SINE MIR 47 204 -58 339 236 136 43 chr3 17629590 17629730 -209894848 + MIR SINE MIR 100 252 -10 288 209 30 15 chr3 17630260 17630327 -209894251 + MIR3 SINE MIR 137 204 -4 2729 25 0 16 chr3 17630819 17631142 -209893436 + AluYb8 SINE Alu 1 318 0 2158 129 0 0 chr3 17631212 17631514 -209893064 + AluSg SINE Alu 1 302 -8 1816 86 0 4 chr3 17631654 17631886 -209892692 + AluSq SINE Alu 1 231 -82 221 163 0 0 chr3 17631890 17631933 -209892645 + A-rich Low_complexity Low_complexity 1 43 0 1868 132 10 13 chr3 17632306 17632617 -209891961 - AluSx SINE Alu 0 312 3 216 300 0 17 chr3 17632720 17632780 -209891798 + L2 LINE L2 3253 3311 -2 588 294 56 10 chr3 17632989 17633186 -209891392 + MIR SINE MIR 8 213 -49 283 196 0 0 chr3 17633232 17633278 -209891300 + MIR SINE MIR 216 261 -1 1870 131 23 36 chr3 17633377 17633682 -209890896 + AluJb SINE Alu 1 301 -11 361 246 0 0 chr3 17634085 17634150 -209890428 + MER5A DNA MER1_type 125 189 0 * 782 315 165 24 chr3 17634150 17634732 -209889846 + L2 LINE L2 978 1642 -1672 242 180 56 56 chr3 17634759 17634848 -209889730 + L1M2 LINE L1 5785 5873 -427 1361 292 76 38 chr3 17634850 17635635 -209888943 + L2 LINE L2 2265 3071 -201 430 306 93 11 chr3 17635669 17635852 -209888726 - L2 LINE L2 -1 3312 3115 250 313 0 36 chr3 17635879 17635962 -209888616 - MIR SINE MIR -182 80 1 630 296 63 0 chr3 17636829 17637018 -209887560 + MIR SINE MIR 58 258 -4 378 0 0 0 chr3 17637632 17637674 -209886904 + (TG)n Simple_repeat Simple_repeat 1 42 0 198 0 0 0 chr3 17637673 17637695 -209886883 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 198 333 98 29 chr3 17637762 17637864 -209886714 - L2 LINE L2 -8 3305 3197 471 264 68 14 chr3 17638289 17638437 -209886141 + MIR SINE MIR 107 262 0 1278 211 57 60 chr3 17638446 17638528 -209886050 - MLT1C LTR MaLR -3 502 421 1530 200 13 29 chr3 17638528 17638843 -209885735 + AluJo SINE Alu 1 310 -2 1278 211 57 60 chr3 17638843 17639225 -209885353 - MLT1C LTR MaLR -84 421 46 370 320 0 0 chr3 17639459 17639556 -209885022 + MIR SINE MIR 44 140 -68 182 303 63 49 chr3 17640109 17640251 -209884327 - L2 LINE L2 -563 2751 2608 192 369 10 19 chr3 17640418 17640521 -209884057 - L3 LINE CR1 -15 1562 1461 1810 52 0 0 chr3 17641217 17641429 -209883149 + AluY SINE Alu 94 305 -6 216 0 0 0 chr3 17642282 17642306 -209882272 + (A)n Simple_repeat Simple_repeat 1 24 0 6744 181 34 25 chr3 17642544 17644043 -209880535 + L1MB7 LINE L1 3739 5251 -895 1870 152 42 115 chr3 17644047 17644474 -209880104 + MSTD LTR MaLR 1 396 0 7855 209 18 48 chr3 17644475 17645697 -209878881 + MSTD-int LTR MaLR 2 1155 -580 4325 178 31 23 chr3 17645697 17646474 -209878104 + LTR39 LTR ERV1 1 783 0 7855 209 18 48 chr3 17646474 17647010 -209877568 + MSTD-int LTR MaLR 1155 1706 -29 1978 180 69 19 chr3 17647030 17647407 -209877171 + MSTD LTR MaLR 1 396 0 4916 155 16 35 chr3 17647411 17648339 -209876239 + L1MB7 LINE L1 5255 6165 -19 698 25 0 0 chr3 17648489 17648569 -209876009 + L1PA2 LINE L1 19 98 -6048 * 38529 32 26 2 chr3 17648536 17653844 -209870734 + L1PA2 LINE L1 578 6018 -137 222 206 0 0 chr3 17653844 17653912 -209870666 + A-rich Low_complexity Low_complexity 1 68 0 434 273 162 15 chr3 17654072 17654257 -209870321 + MIR SINE MIR 5 214 -48 189 265 73 0 chr3 17655344 17655412 -209869166 - L3b LINE CR1 -336 1247 1175 226 330 45 11 chr3 17655747 17655835 -209868743 - MIR3 SINE MIR -50 158 68 298 315 54 34 chr3 17656305 17656454 -209868124 + MIR SINE MIR 96 247 -15 2015 236 55 54 chr3 17656526 17656555 -209868023 + L1ME3A LINE L1 5469 5496 -674 1828 167 37 45 chr3 17656555 17656932 -209867646 + MLT1A2 LTR MaLR 1 374 0 2015 236 55 54 chr3 17656932 17657436 -209867142 + L1ME3A LINE L1 5496 6006 -164 2111 88 0 11 chr3 17657436 17657710 -209866868 + AluSg SINE Alu 34 304 -6 2015 236 55 54 chr3 17657710 17657863 -209866715 + L1ME3A LINE L1 6006 6157 -13 336 320 47 47 chr3 17657948 17658204 -209866374 + L2 LINE L2 2518 2773 -541 21 0 0 0 chr3 17658645 17658666 -209865912 + AT_rich Low_complexity Low_complexity 1 21 0 246 257 80 35 chr3 17658684 17658797 -209865781 - MIR SINE MIR -51 211 94 964 132 0 0 chr3 17659015 17659144 -209865434 + FLAM_C SINE Alu 1 129 -4 2270 94 0 7 chr3 17659155 17659466 -209865112 + AluSc SINE Alu 1 309 0 298 262 159 0 chr3 17659609 17659716 -209864862 - L2 LINE L2 -4 3309 3186 1895 148 0 42 chr3 17659769 17660080 -209864498 - AluSx SINE Alu -14 298 1 489 172 86 11 chr3 17660267 17660360 -209864218 - AluJo SINE Alu -177 135 36 304 273 13 67 chr3 17660935 17661085 -209863493 + L2 LINE L2 3117 3258 -55 255 322 100 27 chr3 17661949 17662133 -209862445 + MIR SINE MIR 10 205 -35 232 186 0 0 chr3 17663135 17663178 -209861400 - MIR SINE MIR -112 150 108 226 257 98 98 chr3 17663491 17663756 -209860822 + L2 LINE L2 2850 3114 -158 * 585 251 18 35 chr3 17663723 17663894 -209860684 + MIR SINE MIR 48 215 -47 227 294 203 7 chr3 17664175 17664318 -209860260 - MIR SINE MIR -10 252 82 520 183 263 66 chr3 17664404 17664617 -209859961 + MIR SINE MIR 8 262 0 2178 106 17 0 chr3 17664995 17665288 -209859290 - AluSx SINE Alu -14 298 1 301 277 95 36 chr3 17665291 17665428 -209859150 - MIR SINE MIR -61 147 3 566 357 80 52 chr3 17667606 17668237 -209856341 - L2 LINE L2 -14 3258 2618 357 343 78 24 chr3 17668261 17668596 -209855982 - L2 LINE L2 -926 2388 2036 813 200 0 7 chr3 17668596 17668731 -209855847 + AluJo SINE Alu 2 135 -177 232 245 32 43 chr3 17669950 17670044 -209854534 - MIR SINE MIR -50 212 120 243 329 79 0 chr3 17670045 17670121 -209854457 + L2 LINE L2 3229 3310 -3 183 376 88 8 chr3 17670114 17670239 -209854339 - MIR SINE MIR -126 136 2 * 379 305 19 19 chr3 17671190 17671295 -209853283 - MIR3 SINE MIR -22 186 82 1959 141 24 3 chr3 17671750 17672048 -209852530 - AluSx SINE Alu -8 304 1 355 307 35 35 chr3 17672259 17672373 -209852205 + MIR3 SINE MIR 6 119 -89 494 311 147 11 chr3 17672509 17672686 -209851892 + MIR3 SINE MIR 2 202 -6 477 263 171 7 chr3 17673278 17673430 -209851148 - MER5A DNA MER1_type -1 188 12 200 298 192 10 chr3 17673461 17673565 -209851013 + L2 LINE L2 3139 3261 -11 438 289 50 16 chr3 17675202 17675323 -209849255 + MIR SINE MIR 2 126 -136 355 259 100 126 chr3 17677093 17677665 -209846913 - L1M2 LINE L1 -5475 1374 818 507 134 0 0 chr3 17678022 17678104 -209846474 + (CA)n Simple_repeat Simple_repeat 2 83 0 320 266 121 16 chr3 17678639 17678763 -209845815 + MIR SINE MIR 82 218 -44 275 302 50 115 chr3 17678999 17679320 -209845258 - L2 LINE L2 -32 3240 2941 287 362 121 24 chr3 17679343 17679550 -209845028 + L2 LINE L2 3032 3258 -14 2392 79 3 0 chr3 17679665 17679957 -209844621 - AluSp SINE Alu -20 293 1 210 342 26 0 chr3 17680466 17680542 -209844036 + L2 LINE L2 3162 3239 -33 191 288 108 81 chr3 17680604 17680715 -209843863 + L2 LINE L2 3136 3249 -23 269 366 69 0 chr3 17681799 17681900 -209842678 + MIR SINE MIR 16 123 -85 343 284 64 46 chr3 17682210 17682357 -209842221 + MIR SINE MIR 32 178 -67 342 246 0 88 chr3 17682622 17682736 -209841842 + MIR3 SINE MIR 70 173 -35 372 319 148 14 chr3 17683002 17683212 -209841366 - MIR SINE MIR 0 262 25 376 307 119 11 chr3 17683952 17684128 -209840450 + MIR SINE MIR 34 228 -34 191 275 110 55 chr3 17684193 17684302 -209840276 + MIR SINE MIR 32 146 -116 918 108 39 8 chr3 17684307 17684437 -209840141 + AluJb SINE Alu 163 296 -16 353 295 54 0 chr3 17684597 17684726 -209839852 - MIR SINE MIR -2 260 125 388 311 54 7 chr3 17685423 17685571 -209839007 - MIR SINE MIR -58 204 50 371 341 119 6 chr3 17685806 17685982 -209838596 + MIR SINE MIR 48 243 -19 303 312 37 28 chr3 17686141 17686250 -209838328 + L2 LINE L2 3123 3232 -40 216 273 0 0 chr3 17686252 17686329 -209838249 + GA-rich Low_complexity Low_complexity 4 80 0 325 278 53 20 chr3 17686954 17687105 -209837473 + L2 LINE L2 2814 2969 -303 1258 260 46 19 chr3 17687120 17687175 -209837403 - LTR16C LTR ERVL 0 491 439 16436 112 24 33 chr3 17687175 17689613 -209834965 + Tigger1 DNA MER2_type 1 2417 -1 1258 260 46 19 chr3 17689613 17689950 -209834628 - LTR16C LTR ERVL -52 439 89 405 200 70 35 chr3 17690117 17690232 -209834346 + L2 LINE L2 3137 3255 -17 332 292 104 60 chr3 17690831 17691744 -209832834 + L1M4 LINE L1 4370 5322 -824 2052 140 17 70 chr3 17691789 17692208 -209832370 - MER57A LTR ERV1 -1 387 7 629 291 25 0 chr3 17692568 17692764 -209831814 + MIR SINE MIR 40 240 -22 1834 175 13 0 chr3 17693883 17694191 -209830387 - AluJb SINE Alu 0 312 1 1920 173 7 0 chr3 17694491 17694786 -209829792 - AluJb SINE Alu -15 297 1 1323 275 45 19 chr3 17694786 17695047 -209829531 - LTR16B LTR ERVL -6 458 180 769 186 8 0 chr3 17695047 17695171 -209829407 + FLAM_A SINE Alu 1 125 -8 1323 275 45 19 chr3 17695171 17695335 -209829243 - LTR16B LTR ERVL -284 180 22 860 319 92 7 chr3 17695342 17695765 -209828813 - LTR16B LTR ERVL -5 459 1 516 213 74 111 chr3 17695802 17696046 -209828532 + MLT1K LTR MaLR 354 588 0 1917 178 0 0 chr3 17696217 17696520 -209828058 + AluJo SINE Alu 1 303 -9 217 156 125 62 chr3 17696616 17696680 -209827898 + L2 LINE L2 3244 3311 -2 1521 149 47 70 chr3 17696769 17697070 -209827508 + AluJo SINE Alu 18 311 -1 217 319 14 0 chr3 17697354 17697423 -209827155 + L2 LINE L2 3228 3297 -16 607 270 59 28 chr3 17697547 17697790 -209826788 - MIR SINE MIR 0 262 18 348 286 0 0 chr3 17698092 17698183 -209826395 - MIR SINE MIR -71 137 47 249 139 0 0 chr3 17698184 17698227 -209826351 + (T)n Simple_repeat Simple_repeat 1 43 0 205 267 33 67 chr3 17699508 17699598 -209824980 - MIR SINE MIR -81 127 40 387 216 80 74 chr3 17700310 17700486 -209824092 + MIR SINE MIR 37 213 -49 196 326 66 41 chr3 17701198 17701391 -209823187 + L2 LINE L2 2418 2615 -699 517 272 146 13 chr3 17701391 17701549 -209823029 + MER5A DNA MER1_type 4 182 -7 265 156 16 16 chr3 17701565 17701629 -209822949 - MER5A DNA MER1_type -95 94 31 676 295 50 96 chr3 17701936 17702331 -209822247 + LTR67 LTR ERVL 97 468 -89 1977 114 0 14 chr3 17702331 17702612 -209821966 - AluSx SINE Alu -9 303 27 676 295 50 96 chr3 17702612 17702697 -209821881 + LTR67 LTR ERVL 468 555 -2 2008 94 64 0 chr3 17702756 17703060 -209821518 - AluSg SINE Alu 0 321 1 464 302 56 22 chr3 17703073 17703252 -209821326 - MLT1J2 LTR MaLR 0 450 266 1216 307 141 4 chr3 17703566 17704061 -209820517 + MLT1K LTR MaLR 24 586 -2 506 270 31 13 chr3 17704372 17704531 -209820047 + MIR SINE MIR 90 251 -11 526 310 6 6 chr3 17704958 17705129 -209819449 - MIR SINE MIR -72 190 20 445 205 170 0 chr3 17705427 17705539 -209819039 + MIR SINE MIR 14 144 -118 663 236 32 25 chr3 17705542 17705699 -209818879 + MLT1D LTR MaLR 1 158 -347 410 215 0 0 chr3 17705714 17705793 -209818785 - L1M4 LINE L1 -1287 4859 4781 814 106 0 53 chr3 17705803 17705935 -209818643 - L1MB7 LINE L1 -16 6168 6044 503 254 9 0 chr3 17706025 17706135 -209818443 - MER81 DNA DNA 0 114 4 860 230 84 59 chr3 17706176 17706324 -209818254 + LTR16C LTR ERVL 69 212 -279 2243 42 0 4 chr3 17706324 17706586 -209817992 - AluY SINE Alu -19 292 32 860 230 84 59 chr3 17706586 17706759 -209817819 + LTR16C LTR ERVL 212 398 -93 639 250 17 56 chr3 17707382 17707440 -209817138 + MLT1G1 LTR MaLR 1 60 -535 2023 133 10 0 chr3 17707440 17707741 -209816837 - AluSg SINE Alu -6 304 1 639 250 17 56 chr3 17707741 17707862 -209816716 + MLT1G1 LTR MaLR 60 173 -422 464 174 69 142 chr3 17707857 17708066 -209816512 + MLT1G LTR MaLR 288 584 -5 * 181 273 18 18 chr3 17708308 17708363 -209816215 + MIR SINE MIR 21 75 -133 277 195 244 0 chr3 17708395 17708477 -209816101 + MIR SINE MIR 63 164 -98 365 190 13 13 chr3 17708581 17708660 -209815918 + MIR SINE MIR 36 114 -94 740 266 5 37 chr3 17708957 17709175 -209815403 + MIR SINE MIR 1 211 -51 1571 213 32 52 chr3 17709340 17709782 -209814796 - MER113 DNA MER1_type? -88 433 1 269 351 29 11 chr3 17709995 17710169 -209814409 + L1ME4a LINE L1 5620 5796 -2012 865 263 38 0 chr3 17710193 17710406 -209814172 - MIR SINE MIR -34 228 8 1549 128 120 8 chr3 17710448 17710706 -209813872 - AluJo SINE Alu -25 287 1 400 246 113 0 chr3 17710763 17710905 -209813673 + L1ME4a LINE L1 5961 6118 -3 185 121 0 0 chr3 17711005 17711038 -209813540 - MIR SINE MIR -1 261 229 298 281 9 88 chr3 17711080 17711194 -209813384 + MER91C DNA MER1_type 1 105 -35 635 258 26 0 chr3 17711209 17711364 -209813214 - MIR SINE MIR -85 177 19 671 300 6 0 chr3 17711457 17711637 -209812941 + MIR3 SINE MIR 19 199 -9 230 254 18 0 chr3 17712038 17712093 -209812485 + L1MC/D LINE L1 5852 5907 -1901 1187 200 0 0 chr3 17712275 17712514 -209812064 - AluJb SINE Alu 0 311 73 856 114 0 50 chr3 17712534 17712674 -209811904 + FLAM_C SINE Alu 1 133 0 2056 145 57 8 chr3 17712712 17713016 -209811562 - MLT1B LTR MaLR 0 390 63 2498 74 0 0 chr3 17713016 17713313 -209811265 - AluSg SINE Alu -2 308 12 2056 145 57 8 chr3 17713313 17713380 -209811198 - MLT1B LTR MaLR -327 63 1 305 317 150 6 chr3 17713607 17713774 -209810804 + MIR SINE MIR 56 246 -16 2671 176 52 2 chr3 17714166 17714205 -209810373 - MLT2B1 LTR ERVL 0 520 484 491 31 15 0 chr3 17714205 17714270 -209810308 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 2671 176 52 2 chr3 17714270 17714725 -209809853 - MLT2B1 LTR ERVL -36 484 1 925 291 53 18 chr3 17714725 17714972 -209809606 + MLT1K LTR MaLR 36 273 -315 2067 127 0 29 chr3 17714972 17715288 -209809290 + AluSx SINE Alu 1 307 -5 925 291 53 18 chr3 17715288 17715456 -209809122 + MLT1K LTR MaLR 273 516 -72 390 293 99 31 chr3 17715501 17715692 -209808886 - MER63A DNA MER1_type -4 206 3 1904 165 6 19 chr3 17715745 17716061 -209808517 + AluJo SINE Alu 1 312 0 244 359 119 6 chr3 17716130 17716289 -209808289 - MIR SINE MIR -52 210 34 2219 91 3 41 chr3 17716696 17717014 -209807564 + AluSx SINE Alu 1 306 -6 489 278 182 12 chr3 17717036 17717334 -209807244 + MLT1L LTR MaLR 142 544 -19 336 294 16 8 chr3 17717365 17717491 -209807087 + L1ME LINE L1 5693 5819 -302 1174 170 67 13 chr3 17717637 17717861 -209806717 + MER46A DNA MER2_type 1 236 0 2047 108 17 7 chr3 17718168 17718451 -209806127 + AluJb SINE Alu 1 287 -21 180 0 0 0 chr3 17718451 17718471 -209806107 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 541 240 194 34 chr3 17719548 17719873 -209804705 - MLT1J LTR MaLR -25 486 110 1683 189 10 7 chr3 17719965 17720266 -209804312 - AluJo SINE Alu -6 306 5 753 193 6 88 chr3 17720290 17720471 -209804107 - FRAM SINE Alu -18 158 1 221 291 87 0 chr3 17720595 17720698 -209803880 - MIR SINE MIR -61 147 36 335 374 26 5 chr3 17721007 17721202 -209803376 + MIR SINE MIR 47 245 -17 644 181 96 6 chr3 17721466 17721632 -209802946 + MIR SINE MIR 51 231 -31 183 341 24 12 chr3 17721691 17721776 -209802802 - MIR SINE MIR -165 97 12 679 269 148 40 chr3 17722021 17722400 -209802178 - MLT1J LTR MaLR -78 433 14 765 193 0 0 chr3 17722440 17722559 -209802019 + FLAM_A SINE Alu 1 119 -14 21 57 0 0 chr3 17722560 17722595 -209801983 + AT_rich Low_complexity Low_complexity 1 35 0 1801 168 3 7 chr3 17722780 17723084 -209801494 - AluJb SINE Alu -9 303 1 433 261 82 39 chr3 17723354 17723561 -209801017 + MLT1J2 LTR MaLR 20 235 -215 2411 158 29 7 chr3 17723681 17724137 -209800441 + L1MB7 LINE L1 5709 6174 -10 255 264 0 55 chr3 17724161 17724252 -209800326 + MLT1I LTR MaLR 323 408 -1 213 132 0 0 chr3 17724418 17724456 -209800122 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 2240 140 85 18 chr3 17724605 17725006 -209799572 - MSTA LTR MaLR 0 428 1 586 262 36 86 chr3 17725220 17725556 -209799022 + L2 LINE L2 2949 3267 -5 406 284 157 0 chr3 17725673 17725807 -209798771 + MIR SINE MIR 13 167 -95 340 249 28 57 chr3 17725937 17726114 -209798464 - MER5A DNA MER1_type 0 189 18 181 267 0 0 chr3 17726105 17726150 -209798428 - MIR SINE MIR -101 161 117 * 393 228 0 0 chr3 17726203 17726295 -209798283 - MER5A DNA MER1_type -83 106 15 565 211 113 0 chr3 17726345 17726487 -209798091 - MER5B DNA MER1_type -20 158 1 2179 84 22 0 chr3 17726673 17726971 -209797607 + AluSc SINE Alu 1 304 0 427 251 89 45 chr3 17727517 17727696 -209796882 - MIR SINE MIR -27 235 49 2015 151 3 6 chr3 17728799 17729117 -209795461 + 7SLRNA srpRNA srpRNA 1 317 -3 953 261 17 0 chr3 17729267 17729505 -209795073 - MIR SINE MIR 0 262 21 659 203 68 21 chr3 17729523 17729715 -209794863 - L1ME3A LINE L1 -5 6165 5965 807 159 22 7 chr3 17729720 17729858 -209794720 - FRAM SINE Alu -24 152 13 2235 250 114 27 chr3 17729892 17730613 -209793965 - L1ME3A LINE L1 -225 5945 5288 1073 172 22 44 chr3 17730613 17730840 -209793738 - L1MB8 LINE L1 0 6178 5957 2235 250 114 27 chr3 17730840 17731763 -209792815 - L1ME3A LINE L1 -882 5288 4146 230 261 14 14 chr3 17732017 17732086 -209792492 - MLT1J LTR MaLR -214 297 229 278 219 55 0 chr3 17732201 17732274 -209792304 - MLT1L LTR MaLR -538 77 1 332 344 7 19 chr3 17732845 17732999 -209791579 + MIR3 SINE MIR 33 184 -24 180 0 0 0 chr3 17733111 17733131 -209791447 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 685 185 88 76 chr3 17734124 17734263 -209790315 - MER5C DNA MER1_type -71 253 108 7643 26 6 0 chr3 17734263 17735389 -209789189 + L1PA5 LINE L1 5020 6150 -4 685 185 88 76 chr3 17735389 17735498 -209789080 - MER5C DNA MER1_type -216 108 2 269 253 149 40 chr3 17735511 17735685 -209788893 - MER117 DNA MER1_type -4 193 1 424 306 63 27 chr3 17736000 17736222 -209788356 - MIR SINE MIR -12 250 21 5506 129 4 2 chr3 17736222 17737045 -209787533 + L1PA15 LINE L1 5342 6165 0 2260 109 6 6 chr3 17737051 17737363 -209787215 + AluSp SINE Alu 1 312 -1 486 257 59 0 chr3 17737363 17737499 -209787079 + MER63C DNA MER1_type 187 330 -600 424 268 109 46 chr3 17739724 17739963 -209784615 - MARNA DNA Mariner -198 388 135 475 238 20 14 chr3 17740130 17740277 -209784301 - L1ME LINE L1 -381 5740 5593 1629 166 42 3 chr3 17740291 17740574 -209784004 + AluJb SINE Alu 1 294 -18 411 314 54 31 chr3 17740611 17740683 -209783895 - L1ME LINE L1 -687 5475 5406 2157 133 0 0 chr3 17740683 17740977 -209783601 - AluSx SINE Alu -14 298 5 411 314 54 31 chr3 17740977 17741245 -209783333 - L1ME LINE L1 -756 5406 5122 258 286 41 51 chr3 17741305 17741403 -209783175 + MARNA DNA Mariner 476 572 -14 222 319 14 0 chr3 17741433 17741505 -209783073 - L2 LINE L2 -9 3263 3191 886 304 84 27 chr3 17741749 17742517 -209782061 + L2 LINE L2 2252 3053 -219 313 210 0 0 chr3 17742663 17742725 -209781853 - MER91B DNA MER1_type -127 63 2 2458 77 3 19 chr3 17742971 17743283 -209781295 - AluSp SINE Alu -6 307 1 1013 174 111 73 chr3 17743656 17743944 -209780634 + L1ME1 LINE L1 5865 6163 -3 408 254 73 55 chr3 17744132 17744297 -209780281 + MIR SINE MIR 40 207 -55 1746 177 13 25 chr3 17744508 17744824 -209779754 + AluJb SINE Alu 1 312 0 310 238 115 16 chr3 17744917 17745039 -209779539 - MIR SINE MIR -55 207 74 1630 154 0 18 chr3 17745240 17745513 -209779065 + AluJo SINE Alu 43 310 -2 215 254 197 28 chr3 17745568 17745710 -209778868 + MIR SINE MIR 83 248 -14 394 179 19 4 chr3 17746570 17746676 -209777902 + MER5A DNA MER1_type 2 154 -35 2021 137 0 35 chr3 17746768 17746911 -209777667 + AluJb SINE Alu 1 147 -165 1873 158 7 3 chr3 17746911 17747214 -209777364 + AluSx SINE Alu 1 304 -8 2021 137 0 35 chr3 17747214 17747385 -209777193 + AluJb SINE Alu 147 304 -8 180 374 22 0 chr3 17747482 17747573 -209777005 - L2 LINE L2 -12 3260 3168 * 253 331 31 39 chr3 17747552 17747682 -209776896 - MIR SINE MIR -106 156 28 1921 144 7 7 chr3 17747718 17748017 -209776561 + AluJb SINE Alu 1 299 -13 25 51 0 0 chr3 17748019 17748058 -209776520 + AT_rich Low_complexity Low_complexity 1 39 0 2170 168 70 2 chr3 17748096 17748495 -209776083 + MSTB LTR MaLR 1 426 0 23 33 0 0 chr3 17748672 17748702 -209775876 + AT_rich Low_complexity Low_complexity 1 30 0 356 297 94 0 chr3 17748724 17748852 -209775726 + L1ME4a LINE L1 5961 6100 -21 267 103 0 0 chr3 17749246 17749285 -209775293 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6180 43 5 0 chr3 17749311 17750054 -209774524 - L1PA4 LINE L1 -3 6152 5406 1907 150 0 11 chr3 17750128 17750414 -209774164 - AluJb SINE Alu -18 294 12 267 235 56 43 chr3 17750424 17750539 -209774039 + MIR SINE MIR 60 180 -63 2266 106 0 0 chr3 17750623 17750915 -209773663 + AluSg SINE Alu 1 292 -18 2091 232 120 48 chr3 17750916 17750933 -209773645 + HERV16 LTR ERVL 266 280 -4716 1404 180 153 36 chr3 17750933 17751350 -209773228 - MLT1C LTR MaLR -1 466 1 2091 232 120 48 chr3 17751350 17751731 -209772847 + HERV16 LTR ERVL 280 632 -4364 2262 102 16 0 chr3 17751731 17752036 -209772542 + AluSq SINE Alu 1 310 -3 2091 232 120 48 chr3 17752036 17752477 -209772101 + HERV16 LTR ERVL 632 1167 -3829 763 201 31 122 chr3 17752480 17752734 -209771844 - MLT2B1 LTR ERVL 0 520 290 1170 263 41 32 chr3 17752734 17752914 -209771664 + HERV16 LTR ERVL 1192 1369 -3716 2085 143 0 0 chr3 17752914 17753208 -209771370 + AluSx SINE Alu 1 294 -18 1170 263 41 32 chr3 17753208 17753786 -209770792 + HERV16 LTR ERVL 1369 2058 -3027 215 256 6 68 chr3 17753910 17753934 -209770644 + CT-rich Low_complexity Low_complexity 2 26 -140 2105 126 82 22 chr3 17753934 17754339 -209770239 + MSTB1 LTR MaLR 1 429 -3 215 256 6 68 chr3 17754339 17754490 -209770088 + CT-rich Low_complexity Low_complexity 26 166 0 1536 196 21 4 chr3 17754735 17755164 -209769414 + L1MB3 LINE L1 4560 5061 -1085 * 3438 146 17 9 chr3 17755163 17755822 -209768756 + L1MB3 LINE L1 5394 6142 -41 826 250 62 5 chr3 17755822 17756030 -209768548 + AluJo SINE Alu 1 220 -92 24 22 0 43 chr3 17756071 17756100 -209768478 + AT_rich Low_complexity Low_complexity 1 29 -15 1438 146 163 0 chr3 17756100 17756346 -209768232 - AluJo SINE Alu -15 287 2 24 22 0 43 chr3 17756346 17756362 -209768216 + AT_rich Low_complexity Low_complexity 29 44 0 318 74 0 19 chr3 17756362 17756416 -209768162 + L1MB4 LINE L1 6128 6180 0 696 219 67 11 chr3 17757172 17757350 -209767228 - MER5A DNA MER1_type -1 188 1 457 312 105 17 chr3 17757356 17757712 -209766866 - MLT1J2 LTR MaLR 0 409 20 326 284 11 11 chr3 17757909 17758004 -209766574 + MLT1K LTR MaLR 157 251 -337 791 232 33 0 chr3 17758395 17758606 -209765972 + L1MDa LINE L1 1849 2066 -4474 * 1268 222 69 15 chr3 17758593 17758926 -209765652 + L1M4 LINE L1 3872 4222 -1924 1587 183 63 3 chr3 17758926 17759210 -209765368 - AluJo SINE Alu -11 301 1 481 174 51 20 chr3 17759221 17759319 -209765259 + AluJo SINE Alu 113 213 -99 1161 124 96 0 chr3 17759515 17759693 -209764885 + AluSg/x SINE Alu 118 312 0 2021 122 10 3 chr3 17759697 17759993 -209764585 + AluY SINE Alu 1 298 -13 246 191 168 53 chr3 17760633 17760764 -209763814 + MIR SINE MIR 75 220 -42 285 342 151 25 chr3 17760775 17762037 -209762541 + L2 LINE L2 1630 3069 -203 25 0 0 0 chr3 17763054 17763079 -209761499 + AT_rich Low_complexity Low_complexity 1 25 0 373 132 0 5 chr3 17763244 17763304 -209761274 + Alu SINE Alu 2 52 -247 1979 122 0 49 chr3 17763766 17764094 -209760484 + AluSx SINE Alu 1 312 0 2069 125 46 24 chr3 17764105 17764434 -209760144 + MER1B DNA MER1_type 2 337 0 782 160 21 7 chr3 17764515 17764659 -209759919 + FRAM SINE Alu 1 146 -30 1748 183 0 31 chr3 17764932 17765067 -209759511 + AluJo SINE Alu 1 139 -173 1955 136 38 0 chr3 17765067 17765354 -209759224 + AluSq SINE Alu 1 298 -15 1748 183 0 31 chr3 17765354 17765540 -209759038 + AluJo SINE Alu 139 312 0 275 98 24 0 chr3 17765543 17765584 -209758994 + LTR23 LTR ERV1 318 359 -78 33153 93 7 8 chr3 17765642 17770247 -209754331 + L1P LINE L1 11 4612 -1534 2040 184 117 28 chr3 17770592 17771154 -209753424 - MLT1E2 LTR MaLR 0 624 1 2251 104 7 0 chr3 17772481 17772778 -209751800 + AluSx SINE Alu 1 299 -13 334 271 48 27 chr3 17772959 17773147 -209751431 + L1P4 LINE L1 5466 5657 -509 2247 95 7 10 chr3 17773418 17773724 -209750854 + AluSc SINE Alu 5 309 0 405 265 11 76 chr3 17774630 17774750 -209749828 - L1M4 LINE L1 -6363 179 74 2446 63 26 0 chr3 17774750 17775053 -209749525 - AluY SINE Alu 0 311 1 405 265 11 76 chr3 17775053 17775117 -209749461 - L1M4 LINE L1 -6468 74 7 839 228 65 81 chr3 17775121 17775493 -209749085 + L1M4 LINE L1 1964 2341 -4055 2074 120 0 34 chr3 17775493 17775817 -209748761 - AluSp SINE Alu 0 313 1 839 228 65 81 chr3 17775817 17775828 -209748750 + L1M4 LINE L1 2341 2351 -4045 2132 145 0 0 chr3 17775828 17776131 -209748447 - AluSx SINE Alu -9 303 1 839 228 65 81 chr3 17776131 17776176 -209748402 + L1M4 LINE L1 2351 2386 -4010 1334 193 25 4 chr3 17776180 17776455 -209748123 + L1M4 LINE L1 5328 5608 -645 * 4781 172 54 58 chr3 17776454 17776495 -209748083 + L1MB4 LINE L1 4274 4314 -1866 1622 146 97 0 chr3 17776495 17776804 -209747774 + MER44D DNA MER2_type 1 609 0 4781 172 54 58 chr3 17776804 17777534 -209747044 + L1MB4 LINE L1 4314 5045 -1135 2470 83 0 0 chr3 17777534 17777836 -209746742 - AluY SINE Alu -9 302 1 4781 172 54 58 chr3 17777836 17778980 -209745598 + L1MB4 LINE L1 5045 6172 -8 1087 95 0 7 chr3 17779068 17779215 -209745363 + AluSq/x SINE Alu 1 146 -167 2244 278 100 47 chr3 17779220 17779298 -209745280 - L1MEc LINE L1 -4487 1909 1837 2102 57 30 50 chr3 17779298 17779597 -209744981 - AluY SINE Alu -18 293 1 2244 278 100 47 chr3 17779597 17779608 -209744970 - L1MEc LINE L1 -4559 1837 1828 2642 40 0 0 chr3 17779608 17779910 -209744668 - AluY SINE Alu -9 302 1 2244 278 100 47 chr3 17779910 17781461 -209743117 - L1MEc LINE L1 -4568 1828 181 1265 53 0 0 chr3 17781461 17781612 -209742966 - AluY SINE Alu 0 311 161 627 232 7 13 chr3 17781613 17781764 -209742814 - L1MEc LINE L1 -6209 187 38 192 77 0 0 chr3 17783835 17783861 -209740717 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1916 138 0 4 chr3 17783870 17784145 -209740433 - AluJo SINE Alu -36 276 3 817 262 42 37 chr3 17784409 17784817 -209739761 + LTR16A LTR ERVL 3 444 -6 2623 131 74 59 chr3 17784914 17785441 -209739137 + MER6A DNA MER2_type 1 535 -70 5072 133 8 6 chr3 17785441 17786874 -209737704 + L1MA4 LINE L1 4582 6020 -280 349 161 99 12 chr3 17786884 17786965 -209737613 + L1MB4 LINE L1 6093 6180 0 530 154 0 0 chr3 17786979 17787057 -209737521 + MER6A DNA MER2_type 524 601 -4 1203 131 35 20 chr3 17787230 17787428 -209737150 - AluJb SINE Alu -26 286 86 22 35 0 0 chr3 17787489 17787518 -209737060 + AT_rich Low_complexity Low_complexity 1 29 0 528 237 49 39 chr3 17787959 17788146 -209736432 - MIR3 SINE MIR -11 197 13 970 224 35 26 chr3 17791104 17791332 -209733246 + MIR SINE MIR 28 257 -5 2404 144 0 15 chr3 17791357 17791753 -209732825 - MLT1B LTR MaLR 0 390 1 278 215 196 28 chr3 17792810 17792917 -209731661 - MIR3 SINE MIR 0 208 84 1926 189 46 9 chr3 17793035 17793500 -209731078 + L1MB2 LINE L1 5715 6195 0 1743 161 22 59 chr3 17793508 17793832 -209730746 + AluJo SINE Alu 1 312 0 186 103 0 0 chr3 17793832 17793861 -209730717 + (GA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr3 17793874 17793905 -209730673 + (CA)n Simple_repeat Simple_repeat 2 32 0 501 280 71 24 chr3 17796890 17797023 -209727555 - MIR3 SINE MIR -1 207 63 2354 90 0 3 chr3 17797023 17797333 -209727245 + AluSc SINE Alu 1 309 0 501 280 71 24 chr3 17797333 17797367 -209727211 - MIR3 SINE MIR -145 63 32 374 319 77 22 chr3 17797635 17797817 -209726761 + MIR3 SINE MIR 16 207 -1 896 110 51 16 chr3 17798231 17798383 -209726195 + L1PB4 LINE L1 5768 5913 -243 841 83 107 0 chr3 17798383 17798504 -209726074 + L1PB4 LINE L1 6011 6144 -12 896 110 51 16 chr3 17798504 17798536 -209726042 + L1PB4 LINE L1 5913 6144 -12 189 0 0 0 chr3 17799403 17799424 -209725154 + (T)n Simple_repeat Simple_repeat 1 21 0 2534 58 0 3 chr3 17799954 17800264 -209724314 - AluY SINE Alu -2 309 1 259 65 43 0 chr3 17800385 17800431 -209724147 + (CA)n Simple_repeat Simple_repeat 1 48 0 272 154 0 0 chr3 17800539 17800591 -209723987 - HAL1 LINE L1 -142 2365 2314 506 136 0 0 chr3 17800592 17800673 -209723905 - AluS SINE Alu -11 301 221 4211 154 33 25 chr3 17800996 17801873 -209722705 + L1MB4 LINE L1 5297 6180 0 699 159 113 20 chr3 17802328 17802479 -209722099 + MER63 DNA MER1_type 897 1061 0 303 95 0 0 chr3 17804638 17804680 -209719898 + 5S rRNA rRNA 1 42 -79 380 282 98 41 chr3 17805021 17805266 -209719312 + L2 LINE L2 3003 3261 -52 201 312 39 13 chr3 17806096 17806173 -209718405 + L2 LINE L2 3227 3305 -8 363 302 76 6 chr3 17806290 17806462 -209718116 + MIR SINE MIR 21 204 -58 887 252 73 3 chr3 17807306 17807592 -209716986 + L1ME LINE L1 5479 5784 -380 686 144 38 8 chr3 17807618 17807764 -209716814 - L1MD3 LINE L1 0 7995 7632 701 232 61 77 chr3 17807767 17808321 -209716257 + MER51A LTR ERV1 1 640 0 210 296 102 71 chr3 17808745 17808843 -209715735 + L3 LINE CR1 1472 1572 -5 1308 225 65 8 chr3 17809089 17809445 -209715133 - MLT1B-int LTR MaLR -989 382 7 280 205 0 71 chr3 17809467 17809579 -209714999 - MLT1B LTR MaLR -15 375 272 495 261 28 17 chr3 17809987 17810167 -209714411 + HAL1 LINE L1 1621 1802 -705 960 81 0 0 chr3 17810292 17810415 -209714163 + AluY SINE Alu 1 123 -188 195 42 0 0 chr3 17810434 17810458 -209714120 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 886 177 0 6 chr3 17811418 17811593 -209712985 - L1MC/D LINE L1 -623 5619 5446 * 1021 248 18 0 chr3 17811591 17811869 -209712709 + L1MC/D LINE L1 4654 4936 -1210 737 224 125 11 chr3 17811926 17812190 -209712388 + L1MC/D LINE L1 5032 5325 -821 867 212 12 0 chr3 17812195 17812365 -209712213 + FRAM SINE Alu 1 172 -4 372 104 26 26 chr3 17812373 17812450 -209712128 + GA-rich Low_complexity Low_complexity 3 79 0 1360 213 9 14 chr3 17812463 17812810 -209711768 + L1MC/D LINE L1 5363 5707 -535 24 0 0 0 chr3 17812814 17812838 -209711740 + AT_rich Low_complexity Low_complexity 1 24 0 1060 105 0 0 chr3 17812946 17813089 -209711489 + AluSc SINE Alu 138 280 -29 2365 89 0 6 chr3 17813125 17813440 -209711138 + AluSq SINE Alu 1 313 0 259 362 7 13 chr3 17813974 17814126 -209710452 + LTR33 LTR ERVL 1 151 -370 2117 183 13 15 chr3 17815670 17816129 -209708449 + L1M2 LINE L1 4877 5334 -812 2324 164 11 19 chr3 17816146 17816619 -209707959 + L1M2 LINE L1 5301 5771 -520 1391 101 0 0 chr3 17816634 17816822 -209707756 + AluSg SINE Alu 1 188 -122 2531 52 0 3 chr3 17817269 17817579 -209706999 - AluY SINE Alu -2 309 1 46 45 0 0 chr3 17818806 17818873 -209705705 + AT_rich Low_complexity Low_complexity 1 67 0 886 108 8 0 chr3 17820005 17820135 -209704443 + L1PA16 LINE L1 6027 6157 -9 4259 142 36 26 chr3 17820138 17820998 -209703580 - L1MA8 LINE L1 -150 6141 5273 2389 83 0 6 chr3 17823574 17823887 -209700691 + AluY SINE Alu 1 311 0 940 219 92 15 chr3 17825361 17825686 -209698892 - L1ME2 LINE L1 -8 6156 5807 390 264 71 76 chr3 17825700 17825897 -209698681 + L1MC3 LINE L1 7100 7470 -525 861 271 50 85 chr3 17826063 17826546 -209698032 + MLT1K LTR MaLR 123 588 0 1673 167 37 14 chr3 17826729 17827083 -209697495 - L1MA4 LINE L1 0 6300 5939 269 334 141 10 chr3 17827304 17827513 -209697065 - MIR SINE MIR -14 248 18 272 154 0 0 chr3 17828097 17828149 -209696429 - HAL1 LINE L1 -142 2365 2314 2280 100 3 0 chr3 17828150 17828450 -209696128 - AluSq SINE Alu -12 301 1 276 30 0 0 chr3 17828580 17828613 -209695965 + (TG)n Simple_repeat Simple_repeat 2 34 0 815 216 0 0 chr3 17828614 17828762 -209695816 - FRAM SINE Alu -29 147 1 212 0 0 35 chr3 17828762 17828791 -209695787 + (TG)n Simple_repeat Simple_repeat 1 28 0 1062 209 0 0 chr3 17828897 17829093 -209695485 + Tigger7 DNA MER2_type 17 212 -521 294 125 0 0 chr3 17830291 17830339 -209694239 + (CA)n Simple_repeat Simple_repeat 2 49 0 545 291 39 24 chr3 17831099 17831432 -209693146 - L1MEd LINE L1 -4862 1257 920 298 298 114 32 chr3 17831731 17831889 -209692689 - L2 LINE L2 0 3272 3102 228 35 0 0 chr3 17832156 17832185 -209692393 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 289 311 58 18 chr3 17832258 17832483 -209692095 + L1M4 LINE L1 3897 4130 -2016 3247 221 17 31 chr3 17832625 17833320 -209691258 - L1MC2 LINE L1 -282 6062 5381 2598 90 22 3 chr3 17833320 17833686 -209690892 - THE1C LTR MaLR -2 373 1 3247 221 17 31 chr3 17833686 17834078 -209690500 - L1MC2 LINE L1 -963 5381 4985 647 367 78 35 chr3 17834379 17835509 -209689069 + L2 LINE L2 989 2167 -1147 325 237 0 40 chr3 17835596 17835672 -209688906 + MER45A DNA AcHobo 5 77 -101 1444 146 23 0 chr3 17835726 17835986 -209688592 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr3 17835987 17836055 -209688523 + MER45A DNA AcHobo 100 168 -10 247 214 38 0 chr3 17836265 17836396 -209688182 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr3 17836588 17836824 -209687754 + MIR SINE MIR 19 262 0 234 0 0 0 chr3 17836853 17836879 -209687699 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1261 233 64 22 chr3 17837679 17838087 -209686491 + MLT1C LTR MaLR 42 466 -1 1312 251 19 6 chr3 17838088 17838450 -209686128 + MLT1C-int LTR MaLR 1 367 -1004 236 204 0 0 chr3 17839058 17839107 -209685471 + T-rich Low_complexity Low_complexity 1 49 0 2486 118 8 5 chr3 17839599 17839973 -209684605 - THE1C LTR MaLR 0 375 1 21 26 0 26 chr3 17841305 17841331 -209683247 + AT_rich Low_complexity Low_complexity 1 26 -12 4802 92 20 28 chr3 17841331 17841514 -209683064 - L1PB1 LINE L1 -2 6149 5966 3636 107 99 33 chr3 17841514 17841564 -209683014 + LTR12 LTR ERV1 1 46 -642 2395 76 3 0 chr3 17841564 17841866 -209682712 - AluY SINE Alu -8 303 1 3636 107 99 33 chr3 17841866 17842460 -209682118 + LTR12 LTR ERV1 46 688 0 4802 92 20 28 chr3 17842460 17842635 -209681943 - L1PB1 LINE L1 -185 5966 5791 1600 100 4 9 chr3 17842635 17842865 -209681713 - AluY SINE Alu -16 295 67 4802 92 20 28 chr3 17842865 17842883 -209681695 - L1PB1 LINE L1 -360 5791 5774 351 0 0 0 chr3 17842883 17842922 -209681656 + (TG)n Simple_repeat Simple_repeat 2 40 0 4802 92 20 28 chr3 17842922 17843282 -209681296 - L1PB1 LINE L1 -377 5774 5417 21 26 0 26 chr3 17843282 17843294 -209681284 + AT_rich Low_complexity Low_complexity 26 38 0 270 0 0 0 chr3 17843401 17843431 -209681147 + (CA)n Simple_repeat Simple_repeat 1 30 0 2774 16 0 0 chr3 17844899 17845203 -209679375 - AluYa5 SINE Alu -7 304 1 279 0 0 0 chr3 17845232 17845263 -209679315 + (A)n Simple_repeat Simple_repeat 1 31 0 1422 165 0 0 chr3 17845546 17845764 -209678814 - AluJo SINE Alu -14 298 81 220 380 10 10 chr3 17846071 17846171 -209678407 + L2 LINE L2 2642 2741 -573 238 302 10 21 chr3 17846229 17846325 -209678253 - L2 LINE L2 -1 3271 3177 1159 248 26 0 chr3 17847245 17847556 -209677022 - L1MB7 LINE L1 -456 5722 5404 1550 195 25 42 chr3 17847560 17847991 -209676587 + L1MB7 LINE L1 5752 6175 -9 25 51 0 0 chr3 17849277 17849316 -209675262 + AT_rich Low_complexity Low_complexity 1 39 0 2123 105 7 3 chr3 17849316 17849602 -209674976 - AluSp SINE Alu -26 287 1 220 226 75 0 chr3 17852332 17852385 -209672193 - MIR SINE MIR -116 146 90 22 35 0 0 chr3 17853747 17853776 -209670802 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 17853842 17853877 -209670701 + AT_rich Low_complexity Low_complexity 1 35 0 32 75 0 0 chr3 17855798 17855865 -209668713 + GC_rich Low_complexity Low_complexity 1 67 0 1813 154 0 46 chr3 17856968 17857293 -209667285 - AluJb SINE Alu -2 310 1 3953 164 65 44 chr3 17857296 17857376 -209667202 - L1MB7 LINE L1 0 6184 6107 2105 106 31 3 chr3 17857376 17857668 -209666910 + AluSx SINE Alu 1 300 -12 3953 164 65 44 chr3 17857668 17858323 -209666255 - L1MB7 LINE L1 -77 6107 5467 1466 143 5 5 chr3 17858323 17858546 -209666032 - AluJo SINE Alu -9 303 81 3953 164 65 44 chr3 17858546 17858800 -209665778 - L1MB7 LINE L1 -717 5467 5220 733 195 0 0 chr3 17858800 17858956 -209665622 - FLAM_A SINE Alu 0 157 2 3953 164 65 44 chr3 17858956 17859183 -209665395 - L1MB7 LINE L1 -964 5220 4941 449 220 104 54 chr3 17859393 17859634 -209664944 - MER112 DNA MER1_type -3 253 1 428 248 40 10 chr3 17859653 17859754 -209664824 - L2 LINE L2 0 3272 3169 2046 103 50 17 chr3 17860922 17861224 -209663354 + AluSx SINE Alu 1 312 0 2184 131 0 10 chr3 17861376 17861689 -209662889 + AluSx SINE Alu 1 310 -2 523 173 273 13 chr3 17861707 17861857 -209662721 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 17862329 17862357 -209662221 + AT_rich Low_complexity Low_complexity 1 28 0 361 268 160 11 chr3 17862484 17862867 -209661711 + L1ME4a LINE L1 5678 6115 -6 21 36 0 0 chr3 17862959 17862987 -209661591 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 17863396 17863418 -209661160 + AT_rich Low_complexity Low_complexity 1 22 0 2875 7 0 0 chr3 17863424 17863734 -209660844 + AluYa5 SINE Alu 1 310 -1 207 0 0 0 chr3 17863809 17863832 -209660746 + (CA)n Simple_repeat Simple_repeat 2 24 0 1981 152 7 0 chr3 17864233 17864536 -209660042 - AluJb SINE Alu -3 309 5 399 252 65 9 chr3 17864562 17864669 -209659909 - L2 LINE L2 -4 3309 3197 38 22 0 0 chr3 17865100 17865145 -209659433 + AT_rich Low_complexity Low_complexity 1 45 0 1234 171 39 12 chr3 17867682 17867939 -209656639 + L1MB5 LINE L1 5911 6174 0 291 283 42 17 chr3 17868348 17868468 -209656110 + MER5C DNA MER1_type 2 124 -200 2256 107 0 13 chr3 17868610 17868908 -209655670 - AluSx SINE Alu -18 294 1 235 346 12 0 chr3 17868938 17869019 -209655559 - L2 LINE L2 -38 3234 3153 602 288 96 5 chr3 17869051 17869270 -209655308 + L3 LINE CR1 1335 1573 -4 215 136 0 153 chr3 17870072 17870131 -209654447 + L2 LINE L2 3264 3313 0 180 176 0 0 chr3 17870418 17870452 -209654126 + CT-rich Low_complexity Low_complexity 4 37 0 227 344 0 24 chr3 17870478 17870603 -209653975 + CT-rich Low_complexity Low_complexity 1 122 0 327 256 26 0 chr3 17871012 17871090 -209653488 + L2 LINE L2 3223 3302 -11 181 228 18 70 chr3 17871042 17871099 -209653479 + MIR SINE MIR 209 262 0 * 617 242 169 29 chr3 17871368 17871467 -209653111 - MIR SINE MIR -2 260 176 2179 149 0 20 chr3 17871467 17871810 -209652768 - MER1B DNA MER1_type 0 337 2 617 242 169 29 chr3 17871810 17871946 -209652632 - MIR SINE MIR -86 176 1 2556 40 0 7 chr3 17872222 17872525 -209652053 + AluY SINE Alu 1 301 -10 207 341 102 21 chr3 17873246 17873490 -209651088 - L2 LINE L2 -1005 2309 2031 1762 164 73 0 chr3 17873490 17873777 -209650801 + AluJb SINE Alu 1 308 -4 207 341 102 21 chr3 17873777 17873857 -209650721 - L2 LINE L2 -1283 2031 1959 559 193 146 10 chr3 17873878 17874070 -209650508 - MER63 DNA MER1_type -37 1024 807 1577 178 7 43 chr3 17874214 17874518 -209650060 - AluJb SINE Alu -15 297 5 2421 85 0 0 chr3 17874541 17874848 -209649730 - AluYa5 SINE Alu -4 307 1 297 0 0 0 chr3 17874878 17874911 -209649667 + (A)n Simple_repeat Simple_repeat 1 33 0 1945 121 0 0 chr3 17875192 17875456 -209649122 - AluJo SINE Alu -14 298 35 2520 219 73 55 chr3 17877316 17877460 -209647118 + L1MC4a LINE L1 6629 6769 -1039 1325 184 4 0 chr3 17877460 17877694 -209646884 + MER46A DNA MER2_type 1 235 -1 2520 219 73 55 chr3 17877694 17878081 -209646497 + L1MC4a LINE L1 6769 7148 -660 2106 120 11 0 chr3 17878081 17878365 -209646213 + AluSq SINE Alu 1 287 -26 252 0 0 0 chr3 17878365 17878393 -209646185 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2520 219 73 55 chr3 17878393 17878914 -209645664 + L1MC4a LINE L1 7148 7676 -132 3275 130 47 0 chr3 17878914 17879466 -209645112 - L1MA5 LINE L1 -2 6298 5721 2520 219 73 55 chr3 17879466 17879594 -209644984 + L1MC4a LINE L1 7676 7800 -8 1209 113 79 29 chr3 17880459 17880699 -209643879 + L1MB3 LINE L1 5930 6181 -2 1641 183 0 0 chr3 17882055 17882323 -209642255 - AluJo SINE Alu -7 305 38 21 71 0 0 chr3 17882531 17882573 -209642005 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr3 17883003 17883039 -209641539 + AT_rich Low_complexity Low_complexity 1 36 0 219 292 62 0 chr3 17884028 17884093 -209640485 - MIR SINE MIR -110 152 84 291 157 0 0 chr3 17884291 17884342 -209640236 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1769 153 13 16 chr3 17884680 17884987 -209639591 + AluJb SINE Alu 1 306 -6 185 325 157 0 chr3 17885921 17886004 -209638574 + L2 LINE L2 3198 3293 -20 204 302 222 28 chr3 17886408 17886696 -209637882 - L2 LINE L2 -2 3311 2968 1789 168 0 14 chr3 17886874 17887192 -209637386 - AluJo SINE Alu 0 314 1 485 335 33 9 chr3 17887568 17887780 -209636798 - MIR SINE MIR -9 253 37 2024 130 0 0 chr3 17888107 17888383 -209636195 + AluSx SINE Alu 25 300 -12 301 267 10 69 chr3 17888599 17888700 -209635878 + MIR3 SINE MIR 86 180 -28 398 288 51 8 chr3 17888929 17889047 -209635531 + L2 LINE L2 3190 3312 -1 2126 93 3 56 chr3 17889094 17889229 -209635349 + AluSx SINE Alu 4 145 -167 2134 111 7 0 chr3 17889229 17889528 -209635050 + AluSq SINE Alu 3 303 0 2126 93 3 56 chr3 17889528 17889712 -209634866 + AluSx SINE Alu 145 307 -5 1065 246 64 25 chr3 17890910 17891317 -209633261 - HAL1 LINE L1 -426 2081 1659 292 275 0 2 chr3 17891349 17891450 -209633128 - L1MC4 LINE L1 0 8042 7896 261 0 0 0 chr3 17891470 17891499 -209633079 + (CA)n Simple_repeat Simple_repeat 2 30 0 1506 226 104 50 chr3 17891558 17892183 -209632395 - L1MC4 LINE L1 -294 7748 7090 849 160 0 18 chr3 17892183 17892415 -209632163 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 1510 292 138 53 chr3 17892450 17893647 -209630931 - HAL1 LINE L1 -1206 1301 4 193 344 16 0 chr3 17894112 17894173 -209630405 - L2 LINE L2 -1 3312 3251 298 196 70 20 chr3 17894950 17895050 -209629528 + L1ME LINE L1 5491 5590 -574 315 281 118 20 chr3 17895060 17895213 -209629365 + L1ME LINE L1 5415 5582 -584 521 282 110 29 chr3 17895241 17895550 -209629028 - HAL1b LINE L1 -770 578 245 2441 77 0 0 chr3 17897265 17897565 -209627013 - AluY SINE Alu -11 300 1 216 0 0 0 chr3 17897808 17897832 -209626746 + (A)n Simple_repeat Simple_repeat 1 24 0 762 208 8 0 chr3 17897838 17897968 -209626610 + FLAM_A SINE Alu 1 131 -2 1396 170 0 4 chr3 17897970 17898217 -209626361 + L1MA7 LINE L1 3516 3761 -2385 468 76 0 45 chr3 17898217 17898283 -209626295 + Alu SINE Alu 234 296 -14 7705 152 45 5 chr3 17898283 17900263 -209624315 + L1MA7 LINE L1 3919 5980 -311 2575 124 22 10 chr3 17900263 17900665 -209623913 + L1PA16 LINE L1 5752 6158 -8 27 29 0 0 chr3 17900956 17900990 -209623588 + AT_rich Low_complexity Low_complexity 1 34 0 1921 108 32 25 chr3 17900994 17901310 -209623268 + L1MA7 LINE L1 5974 6291 0 24 0 0 0 chr3 17901344 17901368 -209623210 + AT_rich Low_complexity Low_complexity 1 24 0 723 295 41 15 chr3 17901402 17901741 -209622837 + L1ME4a LINE L1 5546 5893 -228 404 226 37 55 chr3 17901761 17901873 -209622705 + L1ME4a LINE L1 5950 6060 -61 2604 62 0 0 chr3 17901873 17902181 -209622397 + AluY SINE Alu 1 308 -3 404 226 37 55 chr3 17902181 17902232 -209622346 + L1ME4a LINE L1 6060 6110 -11 378 377 16 21 chr3 17902374 17902565 -209622013 + L2 LINE L2 2782 2971 -343 720 178 30 11 chr3 17904316 17904582 -209619996 - L1MA9 LINE L1 -22 6290 5924 741 167 40 0 chr3 17904582 17904683 -209619895 - MSTA LTR MaLR 0 428 323 977 69 21 35 chr3 17904683 17904828 -209619750 + MER30 DNA MER1_type 1 143 -87 279 0 0 0 chr3 17904828 17904859 -209619719 + (TG)n Simple_repeat Simple_repeat 2 32 0 2750 72 56 8 chr3 17905262 17905605 -209618973 - L1PB1 LINE L1 -2 6149 5824 411 21 0 0 chr3 17905605 17905653 -209618925 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr3 17905652 17905682 -209618896 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 2750 72 56 8 chr3 17905653 17905713 -209618865 - L1PB1 LINE L1 -327 5824 5757 1626 133 6 71 chr3 17905713 17905854 -209618724 - L1PB1 LINE L1 -687 5464 5315 2390 74 0 7 chr3 17905854 17906151 -209618427 - AluSc SINE Alu -14 295 1 1626 133 6 71 chr3 17906151 17906507 -209618071 - L1PB1 LINE L1 -836 5315 4987 848 96 0 0 chr3 17906508 17906612 -209617966 + MER30 DNA MER1_type 127 230 0 660 121 174 23 chr3 17906612 17906743 -209617835 - MSTA LTR MaLR -93 335 185 1131 97 143 0 chr3 17907860 17908035 -209616543 - MSTA LTR MaLR -228 200 1 922 121 0 0 chr3 17908038 17908170 -209616408 - L1MA9 LINE L1 -387 5925 5794 180 0 0 0 chr3 17908170 17908190 -209616388 + (TATG)n Simple_repeat Simple_repeat 3 22 0 2021 153 3 18 chr3 17908191 17908531 -209616047 + L1M2 LINE L1 5451 5785 -527 2081 116 0 10 chr3 17908879 17909171 -209615407 - AluSq SINE Alu -24 289 1 22 0 0 0 chr3 17909172 17909194 -209615384 + AT_rich Low_complexity Low_complexity 1 22 0 3157 176 9 18 chr3 17909204 17909773 -209614805 + L1MB7 LINE L1 5621 6184 0 1931 206 48 7 chr3 17909784 17910303 -209614275 + L1MC3 LINE L1 7301 7908 -87 552 235 72 7 chr3 17910305 17910458 -209614120 + MIR SINE MIR 100 262 0 2547 47 0 3 chr3 17910811 17911112 -209613466 + AluY SINE Alu 1 300 -11 851 144 58 23 chr3 17911176 17911349 -209613229 - MER53 DNA DNA -10 179 1 2021 127 7 0 chr3 17911380 17911663 -209612915 + AluSx SINE Alu 7 291 -21 1746 121 36 78 chr3 17911722 17912028 -209612550 + AluJb SINE Alu 1 293 -19 270 217 33 0 chr3 17912633 17912693 -209611885 + GA-rich Low_complexity Low_complexity 4 65 0 838 107 8 8 chr3 17912802 17912924 -209611654 - L1MA1 LINE L1 0 6302 6181 360 0 0 0 chr3 17912967 17913007 -209611571 + (TC)n Simple_repeat Simple_repeat 1 40 0 229 313 0 0 chr3 17913872 17913920 -209610658 + L2 LINE L2 3231 3278 -35 2252 90 0 53 chr3 17914063 17914385 -209610193 + AluSx SINE Alu 1 305 -7 33 56 0 0 chr3 17917706 17917760 -209606818 + AT_rich Low_complexity Low_complexity 1 54 0 367 164 74 57 chr3 17918020 17918142 -209606436 - L1ME4a LINE L1 -1 6120 5997 2050 86 0 4 chr3 17918191 17918446 -209606132 - AluSc SINE Alu -12 297 44 1699 110 0 13 chr3 17918446 17918681 -209605897 - AluSp SINE Alu -80 233 1 200 59 29 0 chr3 17918717 17918751 -209605827 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2314 113 7 0 chr3 17918799 17919109 -209605469 - AluSx SINE Alu 0 312 1 184 196 52 113 chr3 17920014 17920111 -209604467 + L2 LINE L2 3173 3263 -9 22 35 0 0 chr3 17920411 17920440 -209604138 + AT_rich Low_complexity Low_complexity 1 29 0 2388 74 0 0 chr3 17920916 17921215 -209603363 - AluY SINE Alu -12 299 1 575 235 109 80 chr3 17921288 17921526 -209603052 + MIR SINE MIR 8 252 -10 243 0 0 0 chr3 17921990 17922017 -209602561 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1756 152 22 4 chr3 17922070 17922340 -209602238 - AluJo SINE Alu -35 277 3 472 292 88 95 chr3 17922358 17922632 -209601946 + L2 LINE L2 2987 3258 -14 2359 91 3 0 chr3 17923335 17923633 -209600945 + AluSq SINE Alu 1 299 -14 851 113 0 0 chr3 17923815 17923930 -209600648 - Alu SINE Alu -11 299 185 2277 106 0 0 chr3 17924141 17924444 -209600134 - AluSc SINE Alu -6 303 1 243 224 20 0 chr3 17924576 17924625 -209599953 - L2 LINE L2 0 3313 3264 223 269 77 0 chr3 17924591 17924643 -209599935 - MIR SINE MIR -10 252 197 * 1479 157 94 31 chr3 17925216 17925643 -209598935 + AluJo SINE Alu 1 445 0 327 350 209 6 chr3 17925667 17925830 -209598748 - MER91A DNA MER1_type 0 196 1 2295 136 30 103 chr3 17925940 17926038 -209598540 - L1MB7 LINE L1 -3 6181 6077 2318 94 3 3 chr3 17926038 17926345 -209598233 + AluSp SINE Alu 1 307 -6 2295 136 30 103 chr3 17926345 17926558 -209598020 - L1MB7 LINE L1 -107 6077 5926 2174 103 0 3 chr3 17926558 17926850 -209597728 - AluSg SINE Alu -11 299 9 2295 136 30 103 chr3 17926850 17927103 -209597475 - L1MB7 LINE L1 -258 5926 5656 201 230 0 0 chr3 17927171 17927245 -209597333 + T-rich Low_complexity Low_complexity 1 74 0 2442 75 3 3 chr3 17928432 17928737 -209595841 - AluSp SINE Alu -8 305 1 1602 102 3 221 chr3 17928748 17929129 -209595449 - AluSx SINE Alu -3 299 2 548 231 41 103 chr3 17929171 17929414 -209595164 - L2 LINE L2 -3 3310 3083 310 358 33 40 chr3 17929485 17929636 -209594942 - L2 LINE L2 -2 3270 3121 458 195 110 26 chr3 17930216 17930370 -209594208 + L1MC5 LINE L1 7734 7900 -61 224 236 0 0 chr3 17930896 17930951 -209593627 + (TA)n Simple_repeat Simple_repeat 1 55 0 516 72 0 0 chr3 17930951 17931020 -209593558 + (TG)n Simple_repeat Simple_repeat 2 70 0 574 153 0 0 chr3 17931023 17931108 -209593470 - FRAM SINE Alu -25 151 67 411 188 62 31 chr3 17931115 17931211 -209593367 - MIR SINE MIR -108 154 56 580 229 55 37 chr3 17931802 17932020 -209592558 - AluSq SINE Alu -1 312 91 335 258 121 16 chr3 17933161 17933285 -209591293 + MIR SINE MIR 82 218 -44 275 302 50 115 chr3 17933521 17933842 -209590736 - L2 LINE L2 -32 3240 2941 287 362 121 24 chr3 17933865 17934072 -209590506 + L2 LINE L2 3032 3258 -14 2392 79 3 0 chr3 17934187 17934479 -209590099 - AluSp SINE Alu -20 293 1 210 342 26 0 chr3 17934988 17935064 -209589514 + L2 LINE L2 3162 3239 -33 191 288 108 81 chr3 17935126 17935237 -209589341 + L2 LINE L2 3136 3249 -23 269 366 69 0 chr3 17936321 17936422 -209588156 + MIR SINE MIR 16 123 -85 343 284 64 46 chr3 17936732 17936879 -209587699 + MIR SINE MIR 32 178 -67 342 246 0 88 chr3 17937144 17937258 -209587320 + MIR3 SINE MIR 70 173 -35 372 319 148 14 chr3 17937524 17937734 -209586844 - MIR SINE MIR 0 262 25 376 307 119 11 chr3 17938473 17938649 -209585929 + MIR SINE MIR 34 228 -34 191 275 110 55 chr3 17938714 17938823 -209585755 + MIR SINE MIR 32 146 -116 918 108 39 8 chr3 17938828 17938958 -209585620 + AluJb SINE Alu 163 296 -16 328 302 54 0 chr3 17939118 17939247 -209585331 - MIR SINE MIR -2 260 125 401 304 54 7 chr3 17939944 17940092 -209584486 - MIR SINE MIR -58 204 50 371 341 119 6 chr3 17940327 17940503 -209584075 + MIR SINE MIR 48 243 -19 303 312 37 28 chr3 17940662 17940771 -209583807 + L2 LINE L2 3123 3232 -40 216 273 0 0 chr3 17940773 17940850 -209583728 + GA-rich Low_complexity Low_complexity 4 80 0 325 278 53 20 chr3 17941479 17941630 -209582948 + L2 LINE L2 2814 2969 -303 266 154 58 0 chr3 17941645 17941697 -209582881 - LTR16C LTR ERVL 0 491 437 13185 112 25 15 chr3 17941700 17944139 -209580439 + Tigger1 DNA MER2_type 1 2417 -1 1136 293 42 9 chr3 17944142 17944476 -209580102 - LTR16C LTR ERVL -58 433 89 405 200 70 35 chr3 17944643 17944758 -209579820 + L2 LINE L2 3137 3255 -17 329 294 104 60 chr3 17945357 17946270 -209578308 + L1M4 LINE L1 4370 5322 -824 2052 140 17 70 chr3 17946315 17946734 -209577844 - MER57A LTR ERV1 -1 387 7 629 291 25 0 chr3 17947094 17947290 -209577288 + MIR SINE MIR 40 240 -22 1864 161 13 10 chr3 17948409 17948719 -209575859 - AluJb SINE Alu -1 311 1 1913 174 0 3 chr3 17949019 17949317 -209575261 - AluJb SINE Alu -15 297 1 1335 272 45 19 chr3 17949317 17949578 -209575000 - LTR16B LTR ERVL -6 458 180 769 186 8 0 chr3 17949578 17949702 -209574876 + FLAM_A SINE Alu 1 125 -8 1335 272 45 19 chr3 17949702 17949866 -209574712 - LTR16B LTR ERVL -284 180 22 860 319 92 7 chr3 17949873 17950296 -209574282 - LTR16B LTR ERVL -5 459 1 516 213 74 111 chr3 17950333 17950577 -209574001 + MLT1K LTR MaLR 354 588 0 1925 178 0 0 chr3 17950748 17951051 -209573527 + AluJo SINE Alu 1 303 -9 217 156 125 62 chr3 17951147 17951211 -209573367 + L2 LINE L2 3244 3311 -2 1537 146 47 70 chr3 17951300 17951601 -209572977 + AluJo SINE Alu 18 311 -1 217 319 14 0 chr3 17951885 17951954 -209572624 + L2 LINE L2 3228 3297 -16 607 270 59 28 chr3 17952078 17952321 -209572257 - MIR SINE MIR 0 262 18 348 286 0 0 chr3 17952623 17952714 -209571864 - MIR SINE MIR -71 137 47 249 139 0 0 chr3 17952715 17952758 -209571820 + (T)n Simple_repeat Simple_repeat 1 43 0 205 267 33 67 chr3 17954039 17954129 -209570449 - MIR SINE MIR -81 127 40 387 216 80 74 chr3 17954841 17955017 -209569561 + MIR SINE MIR 37 213 -49 196 326 66 41 chr3 17955729 17955922 -209568656 + L2 LINE L2 2418 2615 -699 530 266 146 13 chr3 17955922 17956080 -209568498 + MER5A DNA MER1_type 4 182 -7 265 156 16 16 chr3 17956096 17956160 -209568418 - MER5A DNA MER1_type -95 94 31 703 292 50 94 chr3 17956467 17956861 -209567717 + LTR67 LTR ERVL 97 468 -89 1950 115 0 14 chr3 17956861 17957139 -209567439 - AluSx SINE Alu -12 300 27 703 292 50 94 chr3 17957139 17957224 -209567354 + LTR67 LTR ERVL 468 555 -2 2008 94 64 0 chr3 17957283 17957587 -209566991 - AluSg SINE Alu 0 321 1 456 302 56 22 chr3 17957600 17957779 -209566799 - MLT1J2 LTR MaLR 0 450 266 1216 307 141 4 chr3 17958093 17958588 -209565990 + MLT1K LTR MaLR 24 586 -2 480 277 31 13 chr3 17958899 17959058 -209565520 + MIR SINE MIR 90 251 -11 526 310 6 6 chr3 17959485 17959656 -209564922 - MIR SINE MIR -72 190 20 445 205 170 0 chr3 17959954 17960066 -209564512 + MIR SINE MIR 14 144 -118 663 236 32 25 chr3 17960069 17960226 -209564352 + MLT1D LTR MaLR 1 158 -347 410 215 0 0 chr3 17960241 17960320 -209564258 - L1M4 LINE L1 -1287 4859 4781 814 106 0 53 chr3 17960330 17960462 -209564116 - L1MB7 LINE L1 -16 6168 6044 503 254 9 0 chr3 17960552 17960662 -209563916 - MER81 DNA DNA 0 114 4 860 230 84 59 chr3 17960703 17960851 -209563727 + LTR16C LTR ERVL 69 212 -279 2243 42 0 4 chr3 17960851 17961113 -209563465 - AluY SINE Alu -19 292 32 860 230 84 59 chr3 17961113 17961286 -209563292 + LTR16C LTR ERVL 212 398 -93 639 250 17 56 chr3 17961909 17961967 -209562611 + MLT1G1 LTR MaLR 1 60 -535 2023 133 10 0 chr3 17961967 17962268 -209562310 - AluSg SINE Alu -6 304 1 639 250 17 56 chr3 17962268 17962389 -209562189 + MLT1G1 LTR MaLR 60 173 -422 482 180 41 97 chr3 17962384 17962593 -209561985 + MLT1G LTR MaLR 288 584 -6 * 181 273 18 18 chr3 17962835 17962890 -209561688 + MIR SINE MIR 21 75 -133 277 195 244 0 chr3 17962922 17963004 -209561574 + MIR SINE MIR 63 164 -98 365 190 13 13 chr3 17963108 17963187 -209561391 + MIR SINE MIR 36 114 -94 740 266 5 37 chr3 17963484 17963702 -209560876 + MIR SINE MIR 1 211 -51 1571 213 32 52 chr3 17963867 17964309 -209560269 - MER113 DNA MER1_type? -88 433 1 376 356 17 6 chr3 17964522 17964696 -209559882 + L1ME4a LINE L1 5623 5798 -323 865 263 38 0 chr3 17964720 17964933 -209559645 - MIR SINE MIR -34 228 8 1549 128 120 8 chr3 17964975 17965233 -209559345 - AluJo SINE Alu -25 287 1 400 246 113 0 chr3 17965290 17965432 -209559146 + L1ME4a LINE L1 5961 6118 -3 185 121 0 0 chr3 17965532 17965565 -209559013 - MIR SINE MIR -1 261 229 298 281 9 88 chr3 17965607 17965721 -209558857 + MER91C DNA MER1_type 1 105 -35 635 258 26 0 chr3 17965736 17965891 -209558687 - MIR SINE MIR -85 177 19 671 300 6 0 chr3 17965984 17966164 -209558414 + MIR3 SINE MIR 19 199 -9 230 254 18 0 chr3 17966565 17966620 -209557958 + L1MC/D LINE L1 5852 5907 -1901 1187 200 0 0 chr3 17966802 17967041 -209557537 - AluJb SINE Alu 0 311 73 862 115 0 43 chr3 17967061 17967200 -209557378 + FLAM_C SINE Alu 1 133 0 2056 145 57 8 chr3 17967238 17967542 -209557036 - MLT1B LTR MaLR 0 390 63 2527 70 0 0 chr3 17967542 17967840 -209556738 - AluSg SINE Alu -1 309 12 2056 145 57 8 chr3 17967840 17967907 -209556671 - MLT1B LTR MaLR -327 63 1 305 317 150 6 chr3 17968134 17968301 -209556277 + MIR SINE MIR 56 246 -16 2671 176 52 2 chr3 17968693 17968732 -209555846 - MLT2B1 LTR ERVL 0 520 484 455 33 16 0 chr3 17968732 17968793 -209555785 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 2671 176 52 2 chr3 17968793 17969248 -209555330 - MLT2B1 LTR ERVL -36 484 1 925 293 53 18 chr3 17969248 17969495 -209555083 + MLT1K LTR MaLR 36 273 -315 2067 127 0 29 chr3 17969495 17969811 -209554767 + AluSx SINE Alu 1 307 -5 925 293 53 18 chr3 17969811 17969979 -209554599 + MLT1K LTR MaLR 273 516 -72 390 293 99 31 chr3 17970024 17970215 -209554363 - MER63A DNA MER1_type -4 206 3 1904 165 6 19 chr3 17970268 17970584 -209553994 + AluJo SINE Alu 1 312 0 244 359 119 6 chr3 17970652 17970811 -209553767 - MIR SINE MIR -52 210 34 2219 91 3 41 chr3 17971218 17971536 -209553042 + AluSx SINE Alu 1 306 -6 489 278 182 12 chr3 17971558 17971856 -209552722 + MLT1L LTR MaLR 142 544 -19 336 294 16 8 chr3 17971887 17972013 -209552565 + L1ME LINE L1 5693 5819 -302 1174 170 67 13 chr3 17972159 17972383 -209552195 + MER46A DNA MER2_type 1 236 0 2033 111 17 7 chr3 17972690 17972973 -209551605 + AluJb SINE Alu 1 287 -21 180 0 0 0 chr3 17972973 17972993 -209551585 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 541 240 194 34 chr3 17974070 17974395 -209550183 - MLT1J LTR MaLR -25 486 110 1683 189 10 7 chr3 17974487 17974788 -209549790 - AluJo SINE Alu -6 306 5 753 193 6 88 chr3 17974812 17974993 -209549585 - FRAM SINE Alu -18 158 1 221 291 87 0 chr3 17975117 17975220 -209549358 - MIR SINE MIR -61 147 36 335 374 26 5 chr3 17975529 17975724 -209548854 + MIR SINE MIR 47 245 -17 669 182 97 0 chr3 17975988 17976153 -209548425 + MIR SINE MIR 51 231 -31 183 341 24 12 chr3 17976212 17976297 -209548281 - MIR SINE MIR -165 97 12 654 272 148 40 chr3 17976542 17976921 -209547657 - MLT1J LTR MaLR -78 433 14 743 202 0 0 chr3 17976961 17977080 -209547498 + FLAM_A SINE Alu 1 119 -14 21 57 0 0 chr3 17977081 17977116 -209547462 + AT_rich Low_complexity Low_complexity 1 35 0 1809 167 3 7 chr3 17977300 17977605 -209546973 - AluJb SINE Alu -8 304 1 433 261 82 39 chr3 17977875 17978082 -209546496 + MLT1J2 LTR MaLR 20 235 -215 2411 158 29 7 chr3 17978202 17978658 -209545920 + L1MB7 LINE L1 5709 6174 -10 259 275 0 55 chr3 17978682 17978773 -209545805 + MLT1I LTR MaLR 323 408 -1 213 132 0 0 chr3 17978939 17978977 -209545601 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 2240 140 85 18 chr3 17979126 17979527 -209545051 - MSTA LTR MaLR 0 428 1 586 262 36 86 chr3 17979741 17980077 -209544501 + L2 LINE L2 2949 3267 -5 385 291 157 0 chr3 17980194 17980328 -209544250 + MIR SINE MIR 13 167 -95 330 254 28 57 chr3 17980458 17980635 -209543943 - MER5A DNA MER1_type 0 189 18 181 267 0 0 chr3 17980626 17980671 -209543907 - MIR SINE MIR -101 161 117 * 393 228 0 0 chr3 17980724 17980816 -209543762 - MER5A DNA MER1_type -83 106 15 565 211 113 0 chr3 17980866 17981008 -209543570 - MER5B DNA MER1_type -20 158 1 2195 83 0 0 chr3 17981202 17981492 -209543086 + AluSc SINE Alu 15 304 0 427 251 89 45 chr3 17982038 17982217 -209542361 - MIR SINE MIR -27 235 49 2226 130 3 0 chr3 17983319 17983635 -209540943 + 7SLRNA srpRNA srpRNA 1 317 -3 953 261 17 0 chr3 17983785 17984023 -209540555 - MIR SINE MIR 0 262 21 659 203 68 21 chr3 17984041 17984233 -209540345 - L1ME3A LINE L1 -5 6165 5965 807 159 22 7 chr3 17984238 17984376 -209540202 - FRAM SINE Alu -24 152 13 2191 252 114 27 chr3 17984410 17985131 -209539447 - L1ME3A LINE L1 -225 5945 5288 1087 167 22 44 chr3 17985131 17985358 -209539220 - L1MB8 LINE L1 0 6178 5957 2191 252 114 27 chr3 17985358 17986281 -209538297 - L1ME3A LINE L1 -882 5288 4146 245 246 14 14 chr3 17986535 17986604 -209537974 - MLT1J LTR MaLR -214 297 229 278 219 55 0 chr3 17986719 17986792 -209537786 - MLT1L LTR MaLR -538 77 1 332 344 7 19 chr3 17987363 17987517 -209537061 + MIR3 SINE MIR 33 184 -24 180 0 0 0 chr3 17987629 17987649 -209536929 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 549 117 146 7 chr3 17988643 17988780 -209535798 - MER5C DNA MER1_type -71 253 98 6456 32 4 0 chr3 17988782 17989768 -209534810 + L1PA5 LINE L1 5020 6009 -145 7344 47 4 3 chr3 17990895 17992357 -209532221 + L1PA6 LINE L1 4689 6153 -1 202 234 0 0 chr3 17992623 17992670 -209531908 + A-rich Low_complexity Low_complexity 1 47 0 365 115 0 0 chr3 17993100 17993152 -209531426 - AluSx SINE Alu -8 292 241 1155 99 6 25 chr3 17993152 17993313 -209531265 - AluSx SINE Alu -154 158 1 1651 124 0 70 chr3 17994660 17994933 -209529645 - AluSx SINE Alu -58 254 1 419 221 88 51 chr3 17994975 17995152 -209529426 - L1ME1 LINE L1 -5 6161 5907 30 69 0 0 chr3 17995156 17995214 -209529364 + AT_rich Low_complexity Low_complexity 1 58 0 369 62 0 0 chr3 17995253 17995301 -209529277 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 183 9 104 chr3 17995329 17995444 -209529134 + L1ME1 LINE L1 1254 1357 -5069 542 227 13 47 chr3 17995451 17995601 -209528977 + L1ME1 LINE L1 1469 1613 -4813 538 229 6 45 chr3 17995588 17995767 -209528811 + L1ME1 LINE L1 4756 4927 -1499 * 757 189 0 0 chr3 17995791 17995923 -209528655 + FRAM SINE Alu 40 171 -5 3277 214 32 61 chr3 17995949 17997024 -209527554 + L1ME1 LINE L1 4931 6035 -411 2304 107 10 0 chr3 17997024 17997324 -209527254 + AluSg SINE Alu 1 303 -7 1946 105 27 90 chr3 17997330 17997663 -209526915 + AluSx SINE Alu 1 312 0 3277 214 32 61 chr3 17997663 17998109 -209526469 + L1ME1 LINE L1 6040 6421 -25 1259 238 143 46 chr3 17998202 17998614 -209525964 - MER21B LTR ERV1 -82 781 330 6897 133 12 22 chr3 17998681 17998814 -209525764 + LTR49-int LTR ERV1 4159 4292 -2039 2015 125 50 0 chr3 17998814 17999111 -209525467 + AluSx SINE Alu 1 312 0 6897 133 12 22 chr3 17999111 17999995 -209524583 + LTR49-int LTR ERV1 4292 5166 -1165 1589 179 20 13 chr3 17999995 18000296 -209524282 + AluJo SINE Alu 1 303 -9 6897 133 12 22 chr3 18000296 18000428 -209524150 + LTR49-int LTR ERV1 5166 5298 -1033 2499 108 113 17 chr3 18000437 18000846 -209523732 - MER83 LTR ERV1 0 448 1 564 246 15 0 chr3 18001257 18001391 -209523187 - MER103 DNA DNA -20 146 11 572 264 74 0 chr3 18001663 18001826 -209522752 - MIR SINE MIR -67 195 21 248 313 15 0 chr3 18002014 18002081 -209522497 + L2 LINE L2 2986 3053 -219 216 315 55 14 chr3 18002221 18002294 -209522284 - L2 LINE L2 -38 3234 3159 327 348 43 7 chr3 18002544 18002685 -209521893 + MIR SINE MIR 67 212 -50 794 241 30 5 chr3 18002780 18002983 -209521595 - MIR SINE MIR -12 250 43 2080 147 3 6 chr3 18003034 18003347 -209521231 + AluJb SINE Alu 1 312 0 263 28 28 0 chr3 18003350 18003386 -209521192 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 642 267 143 5 chr3 18004197 18004407 -209520171 + L1ME4a LINE L1 5533 5771 -2037 2228 92 0 3 chr3 18004414 18004741 -209519837 + AluSx SINE Alu 19 344 0 334 257 97 38 chr3 18004773 18005010 -209519568 + L1ME4a LINE L1 5767 6017 -104 533 256 46 72 chr3 18005427 18005626 -209518952 + MIR SINE MIR 8 200 -62 1571 118 184 8 chr3 18005626 18005881 -209518697 + AluSg1 SINE Alu 3 302 -7 533 256 46 72 chr3 18005881 18005943 -209518635 + MIR SINE MIR 200 262 0 290 295 74 8 chr3 18006454 18006576 -209518002 + MIR SINE MIR 18 147 -61 491 244 35 0 chr3 18007081 18007196 -209517382 + L1MB5 LINE L1 6056 6174 0 785 193 0 30 chr3 18008149 18008315 -209516263 - MER5B DNA MER1_type -15 163 3 682 223 101 45 chr3 18009710 18009957 -209514621 + MIR SINE MIR 2 262 0 2131 81 74 0 chr3 18010607 18010890 -209513688 - AluSq SINE Alu -9 304 1 751 207 17 35 chr3 18010920 18011094 -209513484 - MER5A DNA MER1_type -1 188 18 311 209 3 171 chr3 18011561 18011627 -209512951 - MER5A DNA MER1_type -62 116 41 1840 151 45 3 chr3 18011627 18011918 -209512660 - AluJb SINE Alu -5 307 5 311 209 3 171 chr3 18011918 18011932 -209512646 - MER5A DNA MER1_type -137 41 26 2229 66 7 24 chr3 18011932 18012221 -209512357 - AluSq SINE Alu -13 300 17 311 209 3 171 chr3 18012221 18012284 -209512294 - MER5A DNA MER1_type -152 26 10 312 229 12 24 chr3 18012296 18012379 -209512199 + MER117 DNA MER1_type 61 142 -55 381 246 167 9 chr3 18012432 18012546 -209512032 - MIR SINE MIR -61 147 16 2170 145 0 0 chr3 18012963 18013267 -209511311 + AluJb SINE Alu 3 306 -6 351 285 62 42 chr3 18013446 18013590 -209510988 + MIR3 SINE MIR 21 167 -41 260 200 123 0 chr3 18013588 18013653 -209510925 - MER5C DNA MER1_type -5 319 247 * 2197 180 39 142 chr3 18013719 18013806 -209510772 - LTR8A LTR ERV1 0 727 633 2167 120 0 7 chr3 18013806 18014105 -209510473 + AluSx SINE Alu 1 297 -15 2197 180 39 142 chr3 18014105 18014791 -209509787 - LTR8A LTR ERV1 -94 633 34 2416 209 82 43 chr3 18015430 18015824 -209508754 + MER21B LTR ERV1 98 532 -331 1960 140 0 13 chr3 18015824 18016131 -209508447 + AluSx SINE Alu 1 303 -9 2416 209 82 43 chr3 18016131 18016415 -209508163 + MER21B LTR ERV1 532 803 -60 475 214 58 0 chr3 18017287 18017390 -209507188 + L1ME3 LINE L1 6053 6161 -1 2230 117 0 0 chr3 18017579 18017879 -209506699 + AluSx SINE Alu 1 300 -12 309 356 52 30 chr3 18017888 18018023 -209506555 + MIR3 SINE MIR 10 147 -61 2015 131 20 23 chr3 18018052 18018358 -209506220 + AluSx SINE Alu 1 305 -7 264 300 50 17 chr3 18018422 18018542 -209506036 + MIR SINE MIR 50 173 -89 181 250 0 0 chr3 18018546 18018586 -209505992 + L2 LINE L2 3222 3261 -11 2139 104 3 7 chr3 18019355 18019642 -209504936 + AluSx SINE Alu 1 286 -26 1794 169 23 10 chr3 18020081 18020382 -209504196 - AluJb SINE Alu -7 305 1 603 100 45 27 chr3 18020384 18020494 -209504084 - L1MB8 LINE L1 0 6178 6067 198 214 0 24 chr3 18020560 18020602 -209503976 + MIR SINE MIR 32 72 -136 232 315 62 15 chr3 18021637 18021767 -209502811 + MIR SINE MIR 17 152 -56 830 246 57 36 chr3 18021800 18022134 -209502444 + MER2 DNA MER2_type 3 343 -1 269 250 156 0 chr3 18022942 18023006 -209501572 + L1ME LINE L1 5539 5612 -552 647 264 86 0 chr3 18023011 18023185 -209501393 + MER5A DNA MER1_type 1 189 0 381 269 169 0 chr3 18023250 18023394 -209501184 - MIR SINE MIR -56 206 38 1416 168 53 76 chr3 18023446 18023750 -209500828 - AluJb SINE Alu -15 297 1 243 275 113 4 chr3 18023904 18023998 -209500580 - MIR SINE MIR -102 106 6 24 0 0 0 chr3 18024158 18024182 -209500396 + AT_rich Low_complexity Low_complexity 1 24 0 773 152 9 119 chr3 18024855 18024984 -209499594 - L1MC4 LINE L1 0 8042 7943 872 180 37 37 chr3 18024984 18025173 -209499405 - MER5A DNA MER1_type 0 189 1 773 152 9 119 chr3 18025173 18025253 -209499325 - L1MC4 LINE L1 -99 7943 7856 29 0 0 0 chr3 18026643 18026672 -209497906 + AT_rich Low_complexity Low_complexity 1 29 0 189 147 0 0 chr3 18026687 18026721 -209497857 + (T)n Simple_repeat Simple_repeat 1 34 0 2038 132 19 16 chr3 18026739 18027050 -209497528 + AluSx SINE Alu 1 312 0 602 240 34 29 chr3 18027424 18027599 -209496979 - MIR SINE MIR -21 241 66 186 198 134 134 chr3 18027692 18027789 -209496789 + MIR SINE MIR 106 205 -57 1939 143 17 0 chr3 18027789 18028090 -209496488 - AluJo SINE Alu -6 306 1 186 198 134 134 chr3 18028090 18028149 -209496429 + MIR SINE MIR 204 262 0 225 147 0 0 chr3 18028428 18028462 -209496116 + Alu SINE Alu 2 35 -98 585 77 0 44 chr3 18028462 18028553 -209496025 + AluJo/FRAM SINE Alu 213 299 -13 563 234 6 35 chr3 18029111 18029282 -209495296 - MIR SINE MIR -91 171 6 357 249 126 61 chr3 18029398 18029659 -209494919 + L2 LINE L2 3032 3309 -4 1122 118 0 0 chr3 18029748 18029892 -209494686 + AluSq/x SINE Alu 1 144 -169 574 127 0 0 chr3 18029892 18029971 -209494607 + AluSc SINE Alu 210 288 -21 1246 123 0 0 chr3 18029971 18030142 -209494436 + AluSx SINE Alu 119 289 -21 367 191 0 0 chr3 18030142 18030210 -209494368 + L1M4 LINE L1 5225 5292 -854 2121 128 3 3 chr3 18030215 18030513 -209494065 + AluSx SINE Alu 1 298 -14 1168 125 0 28 chr3 18030513 18030689 -209493889 + AluSg/x SINE Alu 135 305 -5 3374 156 46 50 chr3 18030697 18030786 -209493792 + L1MB8 LINE L1 5209 5297 -881 2383 99 0 3 chr3 18030786 18031088 -209493490 + AluSx SINE Alu 1 301 -11 3374 156 46 50 chr3 18031088 18031761 -209492817 + L1MB8 LINE L1 5297 5972 -206 719 220 10 25 chr3 18031858 18032058 -209492520 + L1MB8 LINE L1 5980 6176 -2 1813 159 107 3 chr3 18032185 18032512 -209492066 - MER46B DNA MER2_type 0 236 1 219 242 48 16 chr3 18032513 18032575 -209492003 + L2 LINE L2 3204 3267 -5 3207 115 36 6 chr3 18032763 18033233 -209491345 + MER1A DNA MER1_type 46 529 0 225 265 133 0 chr3 18033236 18033334 -209491244 - MIR SINE MIR -67 195 85 252 296 37 37 chr3 18033762 18033870 -209490708 - L2 LINE L2 -4 3268 3161 343 266 97 0 chr3 18034367 18034480 -209490098 + MIR SINE MIR 87 210 -52 818 153 0 0 chr3 18034611 18034729 -209489849 - FLAM_C SINE Alu -25 118 1 274 270 93 2 chr3 18034820 18034937 -209489641 - L1ME LINE L1 -376 5786 5660 414 310 44 0 chr3 18034937 18035095 -209489483 + MIR SINE MIR 88 252 -10 293 321 0 0 chr3 18035174 18035258 -209489320 - L1ME LINE L1 -547 5574 5491 2488 63 0 7 chr3 18035428 18035727 -209488851 - AluY SINE Alu -14 297 1 584 153 127 0 chr3 18035970 18036088 -209488490 - MER94 DNA DNA -1 133 1 1823 145 3 39 chr3 18037550 18037860 -209486718 - AluJb SINE Alu -13 299 1 2017 239 75 76 chr3 18038368 18039299 -209485279 - HAL1 LINE L1 -17 2490 1561 553 239 49 74 chr3 18039316 18039351 -209485227 - HAL1 LINE L1 -1126 1381 1347 1761 177 13 10 chr3 18039351 18039661 -209484917 - AluJb SINE Alu -1 311 1 553 239 49 74 chr3 18039661 18040113 -209484465 - HAL1 LINE L1 -1160 1347 853 952 205 0 0 chr3 18040161 18040322 -209484256 - AluJo SINE Alu -27 285 125 252 0 0 0 chr3 18040322 18040350 -209484228 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 196 0 0 chr3 18040350 18040396 -209484182 + L1MC4 LINE L1 6658 6703 -1339 288 186 0 0 chr3 18040819 18040878 -209483700 + (TG)n Simple_repeat Simple_repeat 1 59 0 316 279 23 0 chr3 18040878 18040964 -209483614 - L1MC4 LINE L1 -1340 6702 6615 301 299 23 0 chr3 18040887 18040974 -209483604 + L1MC4 LINE L1 6614 6702 -1340 * 282 56 0 0 chr3 18040974 18041010 -209483568 + (CA)n Simple_repeat Simple_repeat 1 36 0 874 109 0 8 chr3 18041043 18041171 -209483407 - AluJo SINE Alu -174 128 2 525 233 108 124 chr3 18041183 18041287 -209483291 - HAL1 LINE L1 -1679 828 724 2275 128 0 0 chr3 18041287 18041591 -209482987 - AluSx SINE Alu -8 304 1 525 233 108 124 chr3 18041591 18041744 -209482834 - HAL1 LINE L1 -1783 724 575 200 308 0 46 chr3 18041756 18041821 -209482757 + L2 LINE L2 2766 2827 -487 784 361 15 3 chr3 18042100 18042435 -209482143 - ERVL LTR ERVL -698 5066 4728 275 257 31 2 chr3 18042519 18042627 -209481951 - ERVL LTR ERVL -2658 2338 2227 2205 109 0 0 chr3 18042627 18042912 -209481666 + AluSx SINE Alu 17 301 -11 797 182 223 8 chr3 18042916 18043026 -209481552 - L1MB7 LINE L1 -13 6171 6062 292 238 98 24 chr3 18043026 18043190 -209481388 - L1MC4 LINE L1 -2023 6019 5844 1315 226 7 36 chr3 18043751 18044057 -209480521 - AluJb SINE Alu -5 297 1 22 35 0 0 chr3 18044071 18044100 -209480478 + AT_rich Low_complexity Low_complexity 1 29 0 223 234 21 0 chr3 18044368 18044415 -209480163 + MIR SINE MIR 32 79 -129 1620 165 24 3 chr3 18045818 18046115 -209478463 + AluJo SINE Alu 1 303 -9 229 209 23 0 chr3 18046246 18046289 -209478289 - L2 LINE L2 -5 3267 3224 240 314 94 19 chr3 18046652 18046811 -209477767 - MIR3 SINE MIR -37 171 1 701 295 43 14 chr3 18047318 18047599 -209476979 - HAL1 LINE L1 -69 2438 2150 2385 217 72 40 chr3 18047656 18048448 -209476130 - HAL1 LINE L1 -701 1806 990 323 299 0 0 chr3 18048455 18048542 -209476036 - L1MC4 LINE L1 -592 5570 5484 319 344 100 28 chr3 18048567 18048639 -209475939 - L2 LINE L2 -5 3267 3202 2582 106 22 6 chr3 18048639 18048997 -209475581 - THE1B LTR MaLR 0 364 1 319 344 100 28 chr3 18048997 18049104 -209475474 - L2 LINE L2 -70 3202 3075 884 143 0 15 chr3 18049267 18049400 -209475178 + AluJo/FLAM SINE Alu 1 131 -171 1636 117 133 11 chr3 18049402 18049537 -209475041 + AluJb SINE Alu 1 118 -184 1997 121 20 3 chr3 18049537 18049842 -209474736 + AluSx SINE Alu 1 310 -2 1636 117 133 11 chr3 18049842 18049970 -209474608 + AluJb SINE Alu 118 296 -6 913 184 32 50 chr3 18050284 18050566 -209474012 + L1MC5 LINE L1 7641 7917 -44 3592 126 41 48 chr3 18050760 18051445 -209473133 - L1PB4 LINE L1 -1 6155 5476 786 125 0 59 chr3 18051445 18051571 -209473007 - AluSg/x SINE Alu -26 284 165 1893 138 14 0 chr3 18051571 18051847 -209472731 - AluSx SINE Alu -30 282 3 4926 197 24 121 chr3 18051849 18052601 -209471977 - L1 LINE L1 -2218 4570 3747 1582 204 17 13 chr3 18052601 18052900 -209471678 - AluJb SINE Alu -2 300 1 4926 197 24 121 chr3 18052900 18053213 -209471365 - L1 LINE L1 -3041 3747 3405 1478 155 54 32 chr3 18053213 18053490 -209471088 + AluJo SINE Alu 1 283 -29 4926 197 24 121 chr3 18053490 18053719 -209470859 - L1 LINE L1 -3383 3405 3156 1228 167 0 39 chr3 18053719 18053952 -209470626 - AluJo SINE Alu -2 310 87 4926 197 24 121 chr3 18053952 18055238 -209469340 - L1 LINE L1 -3632 3156 2042 352 282 201 7 chr3 18055398 18055547 -209469031 + MIR SINE MIR 7 184 -78 972 188 5 48 chr3 18055697 18055905 -209468673 - AluJo SINE Alu -113 199 1 6027 109 25 11 chr3 18056165 18058071 -209466507 - L1PA13 LINE L1 0 6163 4247 269 265 15 0 chr3 18058464 18058532 -209466046 + MIR SINE MIR 124 192 -70 363 333 207 14 chr3 18059125 18059560 -209465018 - L2 LINE L2 -447 2867 2349 1700 136 49 7 chr3 18060402 18060689 -209463889 + AluJo SINE Alu 3 301 -11 497 265 26 0 chr3 18060729 18060846 -209463732 + L2 LINE L2 3151 3270 -2 2510 243 96 25 chr3 18060893 18061753 -209462825 - L1ME3A LINE L1 -25 6145 5197 2064 106 0 3 chr3 18061753 18062046 -209462532 - AluSc SINE Alu -5 304 13 2510 243 96 25 chr3 18062046 18062203 -209462375 - L1ME3A LINE L1 -973 5197 5053 601 159 138 43 chr3 18062412 18062550 -209462028 - MIR3 SINE MIR -39 169 19 414 292 35 0 chr3 18063563 18063676 -209460902 - L2 LINE L2 -6 3266 3150 261 250 61 122 chr3 18064961 18065273 -209459305 - MLT1K LTR MaLR -161 427 135 515 355 87 0 chr3 18065576 18065807 -209458771 + MIR SINE MIR 6 256 -6 2295 102 0 3 chr3 18065870 18066184 -209458394 - AluSq SINE Alu 0 313 1 1366 172 42 19 chr3 18066249 18066510 -209458068 + AluJo SINE Alu 1 267 -45 309 311 30 15 chr3 18066683 18066815 -209457763 - MIR3 SINE MIR -64 144 11 494 293 96 0 chr3 18067004 18067192 -209457386 + MIR SINE MIR 26 231 -31 454 221 26 0 chr3 18067255 18067368 -209457210 - LTR33A LTR ERVL 0 523 408 970 257 135 80 chr3 18067493 18067883 -209456695 + MLT1F1 LTR MaLR 1 447 -102 1446 142 42 12 chr3 18067946 18068186 -209456392 + AluJo SINE Alu 3 249 -63 2128 104 0 0 chr3 18068235 18068515 -209456063 + AluSg SINE Alu 1 280 -30 270 0 0 0 chr3 18068521 18068551 -209456027 + (TAA)n Simple_repeat Simple_repeat 1 30 0 225 0 0 0 chr3 18068554 18068579 -209455999 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 279 167 4 0 chr3 18068721 18068777 -209455801 + FLAM SINE Alu 84 132 -1 1603 167 0 14 chr3 18068919 18069212 -209455366 + AluJb SINE Alu 1 289 -23 2109 97 0 0 chr3 18069214 18069518 -209455060 + AluSc SINE Alu 1 304 0 255 267 86 48 chr3 18069613 18069718 -209454860 - LTR50 LTR ERVL -648 147 39 1209 103 0 16 chr3 18069865 18070050 -209454528 + AluSg/x SINE Alu 131 312 0 2087 104 3 16 chr3 18070309 18070617 -209453961 - AluSx SINE Alu 0 312 9 519 261 73 0 chr3 18070660 18070825 -209453753 - ERVL LTR ERVL -438 5326 5150 949 193 90 30 chr3 18070843 18071076 -209453502 - MIR SINE MIR -3 259 13 188 270 0 0 chr3 18071123 18071160 -209453418 + MIR SINE MIR 226 262 0 1940 156 0 3 chr3 18072266 18072574 -209452004 - AluJb SINE Alu -5 307 1 409 257 105 20 chr3 18072895 18073047 -209451531 - MIR3 SINE MIR -2 206 42 2040 123 0 0 chr3 18073052 18073385 -209451193 - AluSx SINE Alu 0 333 1 735 235 150 5 chr3 18074155 18074368 -209450210 - MIR SINE MIR -18 244 1 987 344 128 23 chr3 18074407 18075283 -209449295 - L2 LINE L2 -237 3035 2060 1087 176 45 9 chr3 18075308 18075529 -209449049 + MSTB1 LTR MaLR 4 232 -200 * 2055 150 63 11 chr3 18075528 18075894 -209448684 - MSTB1 LTR MaLR -47 385 1 961 160 94 1 chr3 18075898 18076169 -209448409 + L1MB7 LINE L1 5178 5484 -696 489 232 36 43 chr3 18076215 18076353 -209448225 + L1MB7 LINE L1 5476 5612 -566 1370 142 29 16 chr3 18076355 18076601 -209447977 + AluJo SINE Alu 40 288 -24 547 103 0 23 chr3 18076609 18076696 -209447882 + L1MB7 LINE L1 5601 5685 -493 1477 198 28 65 chr3 18076698 18077030 -209447548 + L1MB7 LINE L1 5791 6107 -77 2145 112 0 0 chr3 18077030 18077326 -209447252 - AluSx SINE Alu -16 296 1 1477 198 28 65 chr3 18077326 18077393 -209447185 + L1MB7 LINE L1 6107 6175 -9 2652 151 64 4 chr3 18077548 18078033 -209446545 - L1MA9 LINE L1 -1 6311 5798 320 212 0 15 chr3 18078038 18078104 -209446474 - Tigger5 DNA MER2_type -5 2318 2254 1496 163 15 15 chr3 18078122 18078386 -209446192 - MER7A DNA MER2_type 0 346 83 724 222 0 0 chr3 18078386 18078512 -209446066 + FLAM_A SINE Alu 1 126 -7 2417 50 0 17 chr3 18078520 18078821 -209445757 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 18078821 18078842 -209445736 + AT_rich Low_complexity Low_complexity 1 21 0 509 193 37 37 chr3 18078963 18079072 -209445506 - MER7A DNA MER2_type -239 107 1 497 161 5 4 chr3 18079074 18079175 -209445403 - L1P5 LINE L1 -360 5791 5697 1574 155 71 76 chr3 18079594 18079671 -209444907 + MLT1A1 LTR MaLR 1 77 -288 2193 81 7 3 chr3 18079671 18079969 -209444609 + AluSg SINE Alu 1 299 -11 1574 155 71 76 chr3 18079969 18080258 -209444320 + MLT1A1 LTR MaLR 77 365 0 2232 97 7 0 chr3 18080723 18081033 -209443545 - AluSx SINE Alu 0 312 1 784 154 0 0 chr3 18081321 18081438 -209443140 + FLAM_C SINE Alu 2 118 -25 29 0 0 0 chr3 18081438 18081467 -209443111 + AT_rich Low_complexity Low_complexity 1 29 0 473 297 57 31 chr3 18081555 18081584 -209442994 + MIR SINE MIR 28 55 -207 2057 139 0 0 chr3 18081584 18081887 -209442691 + AluSx SINE Alu 1 303 -9 473 297 57 31 chr3 18081887 18082049 -209442529 + MIR SINE MIR 55 224 -38 2526 161 117 13 chr3 18082070 18082460 -209442118 + L1PB4 LINE L1 5550 6013 -143 2077 106 0 34 chr3 18082460 18082781 -209441797 + AluY SINE Alu 1 310 -1 2526 161 117 13 chr3 18082781 18082931 -209441647 + L1PB4 LINE L1 6013 6146 -10 24 0 0 0 chr3 18082932 18082956 -209441622 + AT_rich Low_complexity Low_complexity 1 24 0 2332 61 0 3 chr3 18082958 18083251 -209441327 + AluSq SINE Alu 1 292 -21 327 167 0 30 chr3 18083276 18083342 -209441236 + Alu SINE Alu 231 294 -6 187 263 102 68 chr3 18083362 18083480 -209441098 - MIR SINE MIR -71 137 16 767 233 15 68 chr3 18085176 18085382 -209439196 + MER58A DNA MER1_type 2 196 -28 180 0 0 0 chr3 18085465 18085485 -209439093 + (A)n Simple_repeat Simple_repeat 1 20 0 1609 122 4 4 chr3 18085489 18085726 -209438852 + AluSx SINE Alu 39 275 -37 294 345 105 34 chr3 18085771 18086096 -209438482 + L2 LINE L2 2839 3186 -86 1658 181 3 3 chr3 18086403 18086702 -209437876 + AluJb SINE Alu 1 299 -13 1196 180 23 126 chr3 18086708 18086918 -209437660 + L1M4 LINE L1 5344 5469 -715 2208 88 3 0 chr3 18086918 18087214 -209437364 + AluSg SINE Alu 1 297 -13 1196 180 23 126 chr3 18087214 18087460 -209437118 + L1M4 LINE L1 5469 5739 -445 2160 106 0 0 chr3 18087472 18087765 -209436813 + AluSx SINE Alu 1 293 -19 918 131 0 38 chr3 18087803 18087963 -209436615 + L1MD1 LINE L1 6089 6242 0 1509 179 10 13 chr3 18087972 18088273 -209436305 + AluJo SINE Alu 1 300 -12 37 0 0 0 chr3 18088287 18088324 -209436254 + AT_rich Low_complexity Low_complexity 1 37 0 1654 167 6 16 chr3 18088373 18088684 -209435894 + AluJb SINE Alu 1 308 -4 2101 118 3 0 chr3 18088840 18089137 -209435441 + AluSx SINE Alu 1 298 -14 602 273 34 50 chr3 18089300 18089538 -209435040 + MIR SINE MIR 28 261 -1 2473 58 0 0 chr3 18090049 18090357 -209434221 + AluY SINE Alu 1 308 -3 1882 129 26 7 chr3 18090547 18090850 -209433728 + AluJb SINE Alu 3 311 -1 487 277 31 25 chr3 18091028 18091187 -209433391 + MIR SINE MIR 48 207 -55 1741 149 7 10 chr3 18091399 18091694 -209432884 + AluJb SINE Alu 1 294 -18 1752 115 80 3 chr3 18091777 18092063 -209432515 - AluSq SINE Alu -5 308 1 232 324 0 0 chr3 18092289 18092357 -209432221 - L2 LINE L2 -1 3271 3204 261 129 129 48 chr3 18092389 18092451 -209432127 + MIR SINE MIR 9 75 -187 2367 88 0 0 chr3 18092866 18093174 -209431404 - AluSx SINE Alu -2 310 3 2323 64 7 7 chr3 18093659 18093954 -209430624 - AluY SINE Alu -14 297 3 840 187 59 73 chr3 18095032 18095087 -209429491 + L1M4 LINE L1 5390 5444 -740 1806 174 26 13 chr3 18095087 18095391 -209429187 + AluJo SINE Alu 4 311 -1 840 187 59 73 chr3 18095391 18095624 -209428954 + L1M4 LINE L1 5444 5674 -510 389 183 39 12 chr3 18095924 18096010 -209428568 - AluS SINE Alu -228 74 1 1955 150 27 0 chr3 18096036 18096330 -209428248 + AluJo SINE Alu 9 310 -2 814 233 8 25 chr3 18096344 18096584 -209427994 + L1M4 LINE L1 4235 4470 -1676 3956 236 49 24 chr3 18096608 18097198 -209427380 + L1MCb LINE L1 7 580 -5685 2192 107 21 0 chr3 18097198 18097489 -209427089 + AluY SINE Alu 3 299 -12 3956 236 49 24 chr3 18097489 18098270 -209426308 + L1MCb LINE L1 580 1414 -4851 2397 105 3 0 chr3 18098406 18098710 -209425868 + AluSp SINE Alu 1 305 -8 398 264 107 6 chr3 18098747 18098925 -209425653 - L1MC4a LINE L1 -1907 5901 5706 5501 53 33 116 chr3 18099696 18100596 -209423982 - LTR12 LTR ERV1 0 826 1 2012 143 78 104 chr3 18100618 18101129 -209423449 - LTR8A LTR ERV1 0 727 230 748 303 138 23 chr3 18101299 18102021 -209422557 + L2 LINE L2 2503 3313 0 226 282 0 47 chr3 18103652 18103737 -209420841 + MIR SINE MIR 65 145 -117 756 251 35 27 chr3 18104560 18104819 -209419759 - L1MA7 LINE L1 -136 6155 5895 541 204 0 0 chr3 18104819 18104932 -209419646 + L1MA7 LINE L1 6173 6285 -6 241 231 31 0 chr3 18107613 18107678 -209416900 - L2 LINE L2 -1 3271 3205 218 292 0 45 chr3 18107805 18107894 -209416684 + MIR SINE MIR 65 149 -113 825 240 39 27 chr3 18109682 18109940 -209414638 - L1MA7 LINE L1 -136 6155 5895 511 221 0 0 chr3 18109940 18110053 -209414525 + L1MA7 LINE L1 6173 6285 -6 590 227 0 14 chr3 18112636 18112777 -209411801 + MIR SINE MIR 9 147 -115 2620 222 30 39 chr3 18113418 18114120 -209410458 + L1MB7 LINE L1 5489 6184 0 974 201 54 0 chr3 18114165 18114369 -209410209 + MER58A DNA MER1_type 10 224 0 203 335 30 0 chr3 18114653 18114817 -209409761 + (TG)n Simple_repeat Simple_repeat 1 169 0 1380 190 99 25 chr3 18116255 18116539 -209408039 - AluJo SINE Alu -7 305 1 970 265 23 10 chr3 18118542 18118844 -209405734 + L1MD3 LINE L1 7672 7977 -18 1045 203 12 8 chr3 18118867 18119108 -209405470 + L1MC1 LINE L1 5989 6230 -103 19702 74 4 23 chr3 18119222 18122092 -209402486 - L1PA5 LINE L1 -2593 3553 737 13581 56 7 0 chr3 18122092 18124727 -209399851 + L1PA5 LINE L1 3532 6152 -2 574 260 41 7 chr3 18124806 18124952 -209399626 + MIR SINE MIR 4 154 -108 2268 93 0 59 chr3 18126029 18126353 -209398225 + AluY SINE Alu 2 306 -5 2182 125 0 3 chr3 18126522 18126825 -209397753 + AluSx SINE Alu 6 307 -5 7443 127 48 31 chr3 18126825 18127032 -209397546 - L1MA3 LINE L1 -26 6279 6077 2240 121 3 0 chr3 18127032 18127329 -209397249 + AluSx SINE Alu 1 298 -14 7443 127 48 31 chr3 18127329 18129598 -209394980 - L1MA3 LINE L1 -228 6077 3782 1912 91 0 4 chr3 18129598 18129840 -209394738 - AluSx SINE Alu -14 298 58 253 242 15 0 chr3 18130629 18130695 -209393883 - L2 LINE L2 -1 3271 3205 218 292 0 45 chr3 18130822 18130911 -209393667 + MIR SINE MIR 65 149 -113 825 240 39 27 chr3 18132698 18132956 -209391622 - L1MA7 LINE L1 -136 6155 5895 511 221 0 0 chr3 18132956 18133069 -209391509 + L1MA7 LINE L1 6173 6285 -6 187 294 111 33 chr3 18137108 18137261 -209387317 - L2 LINE L2 -210 3062 2898 573 234 0 14 chr3 18137438 18137579 -209386999 + MIR SINE MIR 9 147 -115 2620 222 30 39 chr3 18138220 18138922 -209385656 + L1MB7 LINE L1 5489 6184 0 974 201 54 0 chr3 18138967 18139171 -209385407 + MER58A DNA MER1_type 10 224 0 203 335 30 0 chr3 18139354 18139518 -209385060 + (TG)n Simple_repeat Simple_repeat 1 169 0 1326 193 98 28 chr3 18140956 18141241 -209383337 - AluJo SINE Alu -7 305 1 970 265 23 10 chr3 18143244 18143546 -209381032 + L1MD3 LINE L1 7672 7977 -18 1017 208 12 8 chr3 18143569 18143810 -209380768 + L1MC1 LINE L1 5989 6230 -103 13786 62 5 16 chr3 18143924 18146315 -209378263 - L1P3 LINE L1 -2593 3868 1504 2081 141 0 7 chr3 18146799 18147105 -209377473 + AluSx SINE Alu 1 304 -8 206 261 196 22 chr3 18147157 18147249 -209377329 + MIR3 SINE MIR 11 118 -90 205 340 0 29 chr3 18147317 18147420 -209377158 + MIR SINE MIR 104 203 -59 192 306 100 44 chr3 18147577 18147757 -209376821 - L2 LINE L2 -265 3007 2818 2256 90 10 0 chr3 18148541 18148830 -209375748 - AluSx SINE Alu -20 292 1 466 311 44 22 chr3 18149849 18150032 -209374546 + MIR SINE MIR 75 261 -1 220 329 54 47 chr3 18150484 18150633 -209373945 + L2 LINE L2 2598 2747 -567 1969 143 3 7 chr3 18150710 18151011 -209373567 - AluSx SINE Alu -12 300 1 1575 127 88 60 chr3 18151165 18151449 -209373129 + AluSx SINE Alu 3 294 -18 1290 115 5 30 chr3 18151526 18151726 -209372852 - AluSq SINE Alu 0 313 119 2363 82 23 0 chr3 18151975 18152281 -209372297 - AluSp SINE Alu 0 313 1 458 283 142 32 chr3 18152559 18152615 -209371963 + MIR SINE MIR 20 68 -194 2034 125 14 0 chr3 18152615 18152931 -209371647 - AluSq SINE Alu 0 320 1 458 283 142 32 chr3 18152931 18153092 -209371486 + MIR SINE MIR 68 262 0 2759 200 71 20 chr3 18153156 18153201 -209371377 + L1MB4 LINE L1 4404 4445 -1701 1665 193 0 0 chr3 18153201 18153509 -209371069 + AluJb SINE Alu 8 315 0 2759 200 71 20 chr3 18153509 18154161 -209370417 + L1MB4 LINE L1 4445 5139 -1007 2090 124 0 7 chr3 18154838 18155160 -209369418 + AluSx SINE Alu 1 320 0 1271 145 53 42 chr3 18155725 18155755 -209368823 + L1MB4 LINE L1 5106 5134 -1046 2334 106 0 0 chr3 18155755 18156056 -209368522 + AluSc SINE Alu 1 301 -8 1271 145 53 42 chr3 18156056 18156246 -209368332 + L1MB4 LINE L1 5134 5330 -850 1895 173 0 3 chr3 18156246 18156552 -209368026 + AluSx SINE Alu 1 305 -7 1271 145 53 42 chr3 18156552 18156699 -209367879 + L1MB4 LINE L1 5330 5474 -706 1081 129 0 12 chr3 18156700 18156863 -209367715 + FRAM SINE Alu 1 153 -23 43 35 0 0 chr3 18156863 18156920 -209367658 + AT_rich Low_complexity Low_complexity 1 57 0 3904 157 16 25 chr3 18156920 18157238 -209367340 + L1MB4 LINE L1 5478 5798 -382 2107 98 22 0 chr3 18157238 18157552 -209367026 + AluSx SINE Alu 1 320 0 3904 157 16 25 chr3 18157552 18157941 -209366637 + L1MB4 LINE L1 5798 6179 -1 258 292 0 22 chr3 18157941 18158030 -209366548 + L1MC/D LINE L1 5811 5897 -1911 23 0 0 0 chr3 18158222 18158245 -209366333 + AT_rich Low_complexity Low_complexity 1 23 0 1783 147 4 4 chr3 18158394 18158713 -209365865 - AluJb SINE Alu 0 312 23 211 182 91 0 chr3 18158915 18158959 -209365619 + L2 LINE L2 3221 3268 -4 1110 129 99 0 chr3 18159078 18159249 -209365329 + AluSg/x SINE Alu 118 305 -7 2200 103 10 3 chr3 18159249 18159550 -209365028 + AluY SINE Alu 1 303 -8 284 191 168 53 chr3 18160191 18160322 -209364256 + MIR SINE MIR 75 220 -42 601 339 150 28 chr3 18160333 18161612 -209362966 + L2 LINE L2 1630 3084 -188 25 0 0 0 chr3 18162610 18162635 -209361943 + AT_rich Low_complexity Low_complexity 1 25 0 2295 74 0 3 chr3 18162802 18163112 -209361466 + AluSq SINE Alu 1 309 0 205 244 0 0 chr3 18163218 18163259 -209361319 - MIR SINE MIR -138 70 30 510 276 92 54 chr3 18164463 18164724 -209359854 + L3 LINE CR1 625 895 -682 1944 125 0 49 chr3 18165283 18165611 -209358967 + AluSx SINE Alu 1 312 0 2210 122 46 24 chr3 18165622 18165951 -209358627 + MER1B DNA MER1_type 2 337 0 819 167 21 7 chr3 18166032 18166176 -209358402 + FRAM SINE Alu 1 146 -30 1742 183 0 31 chr3 18166449 18166584 -209357994 + AluJo SINE Alu 1 139 -173 1959 132 38 0 chr3 18166584 18166871 -209357707 + AluSq SINE Alu 1 298 -15 1742 183 0 31 chr3 18166871 18167057 -209357521 + AluJo SINE Alu 139 312 0 274 98 24 0 chr3 18167060 18167101 -209357477 + LTR56 LTR ERV1 347 388 -57 37322 90 7 8 chr3 18167159 18172291 -209352287 + L1P LINE L1 11 5138 -1008 228 97 0 0 chr3 18172393 18172424 -209352154 - Alu SINE Alu -269 32 2 2255 112 3 3 chr3 18172469 18172772 -209351806 + AluSq SINE Alu 1 303 -10 1270 295 57 45 chr3 18173123 18173202 -209351376 - LTR67 LTR ERVL -7 550 473 2062 132 7 0 chr3 18173202 18173498 -209351080 + AluSx SINE Alu 1 298 -14 1270 295 57 45 chr3 18173498 18173927 -209350651 - LTR67 LTR ERVL -84 473 36 1896 138 13 30 chr3 18173939 18174244 -209350334 + AluJo SINE Alu 2 301 -11 2099 220 36 13 chr3 18174257 18174726 -209349852 + L1MD2 LINE L1 5669 6148 -211 3105 162 147 5 chr3 18174796 18175369 -209349209 + MER44D DNA MER2_type 71 596 -9 974 164 61 119 chr3 18175371 18175594 -209348984 + MLT1A1 LTR MaLR 46 250 -115 2426 80 7 0 chr3 18175594 18175895 -209348683 - AluSg SINE Alu -7 303 1 974 164 61 119 chr3 18175895 18175964 -209348614 + MLT1A1 LTR MaLR 250 321 -44 317 137 20 0 chr3 18175969 18176020 -209348558 + AluSg SINE Alu 1 52 -249 2903 47 0 6 chr3 18176124 18176488 -209348090 + L1PA2 LINE L1 5646 6007 -148 1084 258 47 17 chr3 18176173 18176534 -209348044 + L1MA4 LINE L1 5695 6066 -234 * 434 273 162 15 chr3 18176721 18176906 -209347672 + MIR SINE MIR 5 214 -48 189 265 73 0 chr3 18177993 18178061 -209346517 - L3b LINE CR1 -336 1247 1175 226 330 45 11 chr3 18178396 18178484 -209346094 - MIR3 SINE MIR -50 158 68 298 315 54 34 chr3 18178954 18179103 -209345475 + MIR SINE MIR 96 247 -15 1936 227 55 26 chr3 18179175 18179204 -209345374 + L1ME3A LINE L1 5469 5496 -674 1828 167 37 45 chr3 18179204 18179581 -209344997 + MLT1A2 LTR MaLR 1 374 0 1936 227 55 26 chr3 18179581 18180083 -209344495 + L1ME3A LINE L1 5496 6015 -155 1968 88 0 12 chr3 18180085 18180336 -209344242 + AluSg SINE Alu 34 281 -29 336 320 47 47 chr3 18180596 18180852 -209343726 + L2 LINE L2 2518 2773 -541 21 0 0 0 chr3 18181293 18181314 -209343264 + AT_rich Low_complexity Low_complexity 1 21 0 264 248 80 35 chr3 18181332 18181445 -209343133 - MIR SINE MIR -51 211 94 964 132 0 0 chr3 18181660 18181789 -209342789 + FLAM_C SINE Alu 1 129 -4 2235 94 0 11 chr3 18181800 18182112 -209342466 + AluSc SINE Alu 1 309 0 298 262 159 0 chr3 18182255 18182362 -209342216 - L2 LINE L2 -4 3309 3186 1851 154 0 42 chr3 18182415 18182726 -209341852 - AluSx SINE Alu -14 298 1 489 172 86 11 chr3 18182913 18183006 -209341572 - AluJo SINE Alu -177 135 36 304 273 13 67 chr3 18183581 18183731 -209340847 + L2 LINE L2 3117 3258 -55 255 322 100 27 chr3 18184595 18184779 -209339799 + MIR SINE MIR 10 205 -35 232 186 0 0 chr3 18185781 18185824 -209338754 - MIR SINE MIR -112 150 108 210 260 98 98 chr3 18186137 18186402 -209338176 + L2 LINE L2 2850 3114 -158 * 599 246 18 35 chr3 18186369 18186540 -209338038 + MIR SINE MIR 48 215 -47 227 294 203 7 chr3 18186821 18186964 -209337614 - MIR SINE MIR -10 252 82 520 183 263 66 chr3 18187050 18187263 -209337315 + MIR SINE MIR 8 262 0 2178 106 17 0 chr3 18187641 18187934 -209336644 - AluSx SINE Alu -14 298 1 301 277 95 36 chr3 18187937 18188074 -209336504 - MIR SINE MIR -61 147 3 549 364 77 51 chr3 18190252 18190882 -209333696 - L2 LINE L2 -14 3258 2618 367 340 78 24 chr3 18190906 18191241 -209333337 - L2 LINE L2 -926 2388 2036 839 193 0 7 chr3 18191241 18191376 -209333202 + AluJo SINE Alu 2 135 -177 232 245 32 43 chr3 18192595 18192689 -209331889 - MIR SINE MIR -50 212 120 243 329 79 0 chr3 18192690 18192766 -209331812 + L2 LINE L2 3229 3310 -3 183 376 88 8 chr3 18192759 18192884 -209331694 - MIR SINE MIR -126 136 2 * 379 305 19 19 chr3 18193835 18193940 -209330638 - MIR3 SINE MIR -22 186 82 1959 141 24 3 chr3 18194392 18194690 -209329888 - AluSx SINE Alu -8 304 1 355 307 35 35 chr3 18194901 18195015 -209329563 + MIR3 SINE MIR 6 119 -89 490 318 134 11 chr3 18195151 18195330 -209329248 + MIR3 SINE MIR 2 202 -6 477 263 171 7 chr3 18195920 18196072 -209328506 - MER5A DNA MER1_type -1 188 12 200 298 192 10 chr3 18196103 18196207 -209328371 + L2 LINE L2 3139 3261 -11 438 289 50 16 chr3 18197845 18197966 -209326612 + MIR SINE MIR 2 126 -136 195 305 51 0 chr3 18249833 18249892 -209274686 - L2 LINE L2 -70 3202 3141 641 289 83 45 chr3 18249911 18250153 -209274425 + MIR SINE MIR 1 251 -11 295 348 16 71 chr3 18250247 18250500 -209274078 - L2 LINE L2 -218 3054 2816 455 257 74 35 chr3 18250739 18251116 -209273462 + L1M4 LINE L1 2853 3244 -2902 1820 165 25 0 chr3 18251161 18251446 -209273132 + AluJo SINE Alu 1 292 -20 537 308 73 27 chr3 18252016 18252425 -209272153 + L1M4 LINE L1 4016 4443 -1703 2061 122 10 0 chr3 18252759 18253053 -209271525 + AluSx SINE Alu 1 297 -15 378 0 0 0 chr3 18253053 18253095 -209271483 + (TG)n Simple_repeat Simple_repeat 1 42 0 438 293 90 42 chr3 18253576 18253672 -209270906 - MIR SINE MIR -16 246 156 2240 78 6 34 chr3 18253672 18253992 -209270586 + AluY SINE Alu 1 311 0 438 293 90 42 chr3 18253992 18254107 -209270471 - MIR SINE MIR -106 156 25 478 179 207 90 chr3 18255143 18255433 -209269145 - MER33 DNA MER1_type 0 324 1 527 133 0 0 chr3 18255460 18255543 -209269035 + AluY SINE Alu 217 299 -12 2360 83 3 3 chr3 18256080 18256382 -209268196 + AluY SINE Alu 1 302 -9 197 228 51 89 chr3 18256410 18256489 -209268089 + MIR SINE MIR 77 152 -110 661 200 21 14 chr3 18256657 18256802 -209267776 + AluSc SINE Alu 154 299 -10 2964 166 21 25 chr3 18256803 18257435 -209267143 + L1MB7 LINE L1 5482 6110 -74 2152 103 0 63 chr3 18257497 18257816 -209266762 - AluSx SINE Alu -13 299 1 375 83 83 0 chr3 18257819 18257879 -209266699 + L1MB7 LINE L1 6114 6178 -6 2263 112 0 22 chr3 18259214 18259528 -209265050 - AluSx SINE Alu -5 307 1 254 227 91 37 chr3 18259628 18259776 -209264802 - L1MC5 LINE L1 -190 7852 7603 262 221 88 0 chr3 18259795 18259908 -209264670 - FLAM_C SINE Alu -10 123 1 268 174 0 0 chr3 18260616 18260662 -209263916 + Alu SINE Alu 1 46 -257 223 268 14 0 chr3 18261001 18261072 -209263506 + T-rich Low_complexity Low_complexity 3 74 0 1242 164 5 19 chr3 18261242 18261450 -209263128 - AluJb SINE Alu -107 205 1 1536 173 76 14 chr3 18261473 18261762 -209262816 - AluJo SINE Alu -3 309 3 659 196 15 8 chr3 18263371 18263504 -209261074 - MER94 DNA DNA 0 134 1 286 325 74 48 chr3 18264109 18264340 -209260238 + L3b LINE CR1 1150 1386 -197 381 294 29 77 chr3 18264932 18265102 -209259476 - MIR3 SINE MIR -6 202 41 1179 194 94 7 chr3 18265132 18265441 -209259137 - MER2 DNA MER2_type -6 339 4 247 288 25 12 chr3 18265710 18265790 -209258788 + MIR SINE MIR 46 126 -82 212 231 115 0 chr3 18266619 18266671 -209257907 - MIR SINE MIR -101 107 50 214 321 33 60 chr3 18266879 18267063 -209257515 - L2 LINE L2 -236 3036 2858 967 317 71 14 chr3 18267108 18267626 -209256952 - L2 LINE L2 -576 2738 2191 1926 143 10 10 chr3 18268336 18268630 -209255948 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 18268732 18268755 -209255823 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 471 295 118 13 chr3 18268802 18269004 -209255574 - MIR SINE MIR -25 237 19 672 162 0 0 chr3 18269051 18269162 -209255416 - AluJb SINE Alu -11 301 191 2196 128 0 6 chr3 18269808 18270120 -209254458 - AluSx SINE Alu -2 310 1 246 233 200 33 chr3 18270151 18270271 -209254307 + MIR SINE MIR 72 211 -51 1144 225 24 30 chr3 18270649 18270982 -209253596 + L1MB7 LINE L1 5853 6183 -1 467 292 12 24 chr3 18271094 18271255 -209253323 + MIR3 SINE MIR 21 180 -28 21 0 0 0 chr3 18271898 18271919 -209252659 + AT_rich Low_complexity Low_complexity 1 21 0 2388 89 0 0 chr3 18272391 18272684 -209251894 + AluSg SINE Alu 1 293 -17 367 251 48 75 chr3 18272900 18273015 -209251563 + L1MC4 LINE L1 7030 7147 -895 2081 141 0 3 chr3 18273015 18273312 -209251266 + AluJb SINE Alu 3 298 -14 367 251 48 75 chr3 18273312 18273960 -209250618 + L1MC4 LINE L1 7147 7737 -305 343 273 103 18 chr3 18274113 18274278 -209250300 + L1ME4a LINE L1 5938 6116 -5 359 175 278 0 chr3 18274917 18275014 -209249564 + MIR SINE MIR 51 174 -88 337 278 40 53 chr3 18275288 18275349 -209249229 + MIR SINE MIR 103 163 -99 2165 134 0 0 chr3 18275349 18275648 -209248930 - AluSx SINE Alu -13 299 1 337 278 40 53 chr3 18275648 18275737 -209248841 + MIR SINE MIR 163 251 -11 551 257 7 29 chr3 18277026 18277166 -209247412 + MIR3 SINE MIR 30 166 -42 323 273 114 114 chr3 18277889 18278065 -209246513 - MIR3 SINE MIR -17 191 16 1901 156 0 7 chr3 18278129 18278424 -209246154 - AluJo SINE Alu -18 294 2 23 54 0 0 chr3 18278437 18278474 -209246104 + AT_rich Low_complexity Low_complexity 1 37 0 819 134 0 31 chr3 18278560 18278687 -209245891 + AluSg/x SINE Alu 169 291 -19 670 171 0 0 chr3 18278693 18278804 -209245774 + FLAM_A SINE Alu 1 111 -31 27 0 0 0 chr3 18278807 18278834 -209245744 + AT_rich Low_complexity Low_complexity 1 27 0 258 327 84 9 chr3 18280634 18280741 -209243837 + L2 LINE L2 3196 3310 -3 207 128 77 0 chr3 18280993 18281032 -209243546 - MIR SINE MIR -5 257 216 * 228 81 81 0 chr3 18280998 18281035 -209243543 - L2 LINE L2 -16 3256 3217 324 326 0 0 chr3 18281078 18281167 -209243411 + L2 LINE L2 3184 3272 0 227 348 77 39 chr3 18283598 18283753 -209240825 + L2 LINE L2 3080 3240 -32 227 317 0 0 chr3 18283764 18283824 -209240754 - MIR3 SINE MIR -33 175 116 307 284 123 0 chr3 18285709 18285855 -209238723 + MIR SINE MIR 41 203 -59 2382 79 0 29 chr3 18285953 18286269 -209238309 + AluY SINE Alu 1 307 -4 1885 158 0 10 chr3 18286625 18286923 -209237655 - AluJb SINE Alu -17 295 1 276 360 87 26 chr3 18288199 18288452 -209236126 + L2 LINE L2 2791 3057 -215 946 279 82 47 chr3 18288477 18289240 -209235338 + L2 LINE L2 2520 3313 0 925 209 61 15 chr3 18289928 18290212 -209234366 - MER93a LTR ERV1 -60 342 1 228 224 122 31 chr3 18290229 18290327 -209234251 - MARNA DNA Mariner -236 350 244 2256 103 3 0 chr3 18290788 18291090 -209233488 - AluSx SINE Alu -9 303 1 276 360 87 26 chr3 18292366 18292619 -209231959 + L2 LINE L2 2791 3057 -215 946 279 82 47 chr3 18292644 18293407 -209231171 + L2 LINE L2 2520 3313 0 186 326 31 71 chr3 18294621 18294719 -209229859 + L2 LINE L2 2990 3083 -189 2087 134 10 0 chr3 18295320 18295626 -209228952 - AluSx SINE Alu -3 309 1 774 157 8 15 chr3 18295831 18295965 -209228613 - FLAM_C SINE Alu -10 133 1 388 167 152 80 chr3 18296138 18296276 -209228302 - L1ME3A LINE L1 -3 6167 6020 3185 252 78 21 chr3 18296277 18297891 -209226687 - L1ME3A LINE L1 -193 5977 4457 1949 140 0 7 chr3 18297891 18298211 -209226367 + AluSx SINE Alu 2 319 0 3185 252 78 21 chr3 18298211 18298434 -209226144 - L1ME3A LINE L1 -1713 4457 4248 186 43 0 0 chr3 18298434 18298457 -209226121 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3185 252 78 21 chr3 18298457 18298563 -209226015 - L1ME3A LINE L1 -1922 4248 3916 1602 162 66 11 chr3 18298587 18298859 -209225719 - AluJb SINE Alu -25 287 1 1630 134 0 8 chr3 18299294 18299567 -209225011 + AluSx SINE Alu 49 319 0 737 245 49 46 chr3 18299591 18299790 -209224788 - L1M4 LINE L1 -1924 4222 4020 186 43 0 0 chr3 18299790 18299813 -209224765 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 737 245 49 46 chr3 18299813 18299919 -209224659 - L1M4 LINE L1 -2126 4020 3916 1602 162 66 11 chr3 18299943 18300215 -209224363 - AluJb SINE Alu -25 287 1 6985 196 37 20 chr3 18300878 18301944 -209222634 - L1MC1 LINE L1 0 6333 5287 2191 138 15 6 chr3 18301944 18302278 -209222300 - MER1B DNA MER1_type 0 337 1 6985 196 37 20 chr3 18302278 18302572 -209222006 - L1MC1 LINE L1 -1046 5287 4999 240 35 0 0 chr3 18302572 18302601 -209221977 + (TTA)n Simple_repeat Simple_repeat 3 31 0 6985 196 37 20 chr3 18302601 18304232 -209220346 - L1MC1 LINE L1 -1334 4999 3287 1653 169 0 83 chr3 18304562 18304876 -209219702 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr3 18304882 18304909 -209219669 + AT_rich Low_complexity Low_complexity 1 27 0 2392 103 0 0 chr3 18305166 18305478 -209219100 - AluSx SINE Alu 0 312 1 308 314 16 16 chr3 18305543 18305664 -209218914 + MIR SINE MIR 56 176 -86 2127 210 105 55 chr3 18306120 18306206 -209218372 - HAL1 LINE L1 -109 2398 2318 1834 171 0 0 chr3 18306206 18306493 -209218085 + AluJb SINE Alu 1 287 -25 2127 210 105 55 chr3 18306493 18307330 -209217248 - HAL1 LINE L1 -189 2318 1429 186 353 0 69 chr3 18307426 18307528 -209217050 + L3b LINE CR1 1203 1297 -286 379 223 69 39 chr3 18307619 18307749 -209216829 - MER103 DNA DNA -25 141 8 350 276 154 16 chr3 18307839 18307962 -209216616 + L3b LINE CR1 1375 1514 -69 524 267 68 0 chr3 18308092 18308238 -209216340 - MIR SINE MIR 0 262 107 360 260 142 47 chr3 18308695 18308864 -209215714 + MIR3 SINE MIR 17 201 -7 188 205 26 0 chr3 18309200 18309239 -209215339 + L2 LINE L2 3265 3304 -9 730 308 19 35 chr3 18309300 18309560 -209215018 + MIR SINE MIR 2 257 -5 290 335 89 63 chr3 18310669 18310985 -209213593 - L2 LINE L2 -48 3224 2901 1447 154 16 87 chr3 18311193 18311313 -209213265 + L1MC2 LINE L1 5989 6116 -228 2236 114 7 0 chr3 18311313 18311620 -209212958 + AluSx SINE Alu 1 309 -3 1447 154 16 87 chr3 18311620 18311869 -209212709 + L1MC2 LINE L1 6116 6332 -12 21 0 0 0 chr3 18311954 18311975 -209212603 + AT_rich Low_complexity Low_complexity 1 21 0 712 187 0 0 chr3 18312101 18312224 -209212354 + FLAM_C SINE Alu 1 123 -20 225 0 0 0 chr3 18312242 18312267 -209212311 + (GA)n Simple_repeat Simple_repeat 1 25 0 2304 103 3 0 chr3 18312945 18313245 -209211333 - AluSp SINE Alu -12 301 1 366 271 12 0 chr3 18313562 18313647 -209210931 + MIR SINE MIR 66 151 -111 335 307 0 0 chr3 18313786 18313874 -209210704 - L2 LINE L2 -4 3268 3181 220 194 32 16 chr3 18314249 18314311 -209210267 + T-rich Low_complexity Low_complexity 3 65 0 27 62 0 0 chr3 18314511 18314559 -209210019 + AT_rich Low_complexity Low_complexity 1 48 0 5131 110 30 93 chr3 18314749 18315959 -209208619 + L1MA9 LINE L1 5143 6263 -49 2254 102 6 10 chr3 18315988 18316301 -209208277 - AluSx SINE Alu 0 312 1 234 156 0 0 chr3 18317138 18317183 -209207395 + CT-rich Low_complexity Low_complexity 2 46 0 24 32 0 0 chr3 18317932 18317963 -209206615 + AT_rich Low_complexity Low_complexity 1 31 0 212 243 86 14 chr3 18318085 18318155 -209206423 - MIR SINE MIR -109 153 79 705 195 0 0 chr3 18318578 18318701 -209205877 - FRAM SINE Alu -16 160 38 277 298 129 32 chr3 18318783 18318907 -209205671 - MIR3 SINE MIR -38 170 35 249 33 0 0 chr3 18318910 18318940 -209205638 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 319 240 103 69 chr3 18318989 18319164 -209205414 - MIR SINE MIR -58 204 24 239 154 0 154 chr3 18319659 18319684 -209204894 + MIR3 SINE MIR 124 151 -57 1836 162 0 7 chr3 18319684 18319968 -209204610 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr3 18319971 18320002 -209204576 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 239 154 0 154 chr3 18320002 18320037 -209204541 + MIR3 SINE MIR 153 178 -30 198 307 53 0 chr3 18320153 18320228 -209204350 + MIR3 SINE MIR 121 199 -9 213 288 30 15 chr3 18321463 18321529 -209203049 - MIR SINE MIR -14 248 182 910 196 98 0 chr3 18321631 18321835 -209202743 + Charlie1 DNA MER1_type 1 224 -2537 620 187 0 0 chr3 18321836 18321959 -209202619 + Charlie1 DNA MER1_type 2625 2747 -14 713 160 102 16 chr3 18323418 18323605 -209200973 - LTR37B LTR ERV1 -55 413 211 6870 71 9 0 chr3 18323605 18324800 -209199778 - L1PA6 LINE L1 0 6154 4957 229 254 40 8 chr3 18325743 18325869 -209198709 + L1MEc LINE L1 1029 1158 -5238 330 311 11 0 chr3 18326135 18326225 -209198353 + L1MEc LINE L1 1134 1224 -4981 291 261 121 20 chr3 18326265 18326464 -209198114 + L1MEc LINE L1 1220 1438 -4779 1878 162 0 19 chr3 18326495 18326809 -209197769 + AluSx SINE Alu 1 308 -4 677 303 143 8 chr3 18326996 18327472 -209197106 + L1ME2 LINE L1 5412 5951 -213 1917 142 3 35 chr3 18327524 18327840 -209196738 - AluJb SINE Alu -6 306 1 235 235 39 0 chr3 18327967 18328018 -209196560 - MIR SINE MIR -59 149 97 824 271 58 96 chr3 18328050 18328614 -209195964 - L2 LINE L2 -46 3267 2253 507 273 97 30 chr3 18329275 18329440 -209195138 - MIR3 SINE MIR -17 191 16 198 0 0 0 chr3 18330080 18330102 -209194476 + (T)n Simple_repeat Simple_repeat 1 22 0 2224 129 3 0 chr3 18332998 18333308 -209191270 - AluSx SINE Alu -1 311 1 23 0 0 0 chr3 18333316 18333339 -209191239 + AT_rich Low_complexity Low_complexity 1 23 0 1971 164 0 3 chr3 18333362 18333667 -209190911 + AluJb SINE Alu 1 304 -8 341 223 287 0 chr3 18333788 18333882 -209190696 - FLAM_A SINE Alu -12 121 1 2349 68 0 0 chr3 18334266 18334594 -209189984 - AluY SINE Alu 0 328 1 197 334 201 45 chr3 18335216 18335863 -209188715 - L2 LINE L2 -834 2480 1733 1024 178 0 17 chr3 18336324 18336504 -209188074 + FRAM SINE Alu 1 176 0 433 152 11 11 chr3 18336506 18336598 -209187980 + GA-rich Low_complexity Low_complexity 4 95 0 1429 174 92 32 chr3 18336604 18336886 -209187692 + AluJo SINE Alu 1 299 -13 538 305 12 24 chr3 18337672 18337836 -209186742 - MIR3 SINE MIR -21 187 26 211 229 0 0 chr3 18338167 18338215 -209186363 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 259 288 0 0 chr3 18339021 18339080 -209185498 + L2 LINE L2 3250 3308 -5 994 184 15 5 chr3 18339700 18339896 -209184682 + MER2 DNA MER2_type 1 198 -147 1214 121 0 0 chr3 18339896 18340062 -209184516 + AluJb SINE Alu 1 166 -146 650 137 0 0 chr3 18340441 18340570 -209184008 - AluJo SINE Alu 0 339 211 1198 196 0 10 chr3 18340629 18340833 -209183745 - AluJo SINE Alu -104 208 7 1372 156 0 26 chr3 18340970 18341201 -209183377 - AluJo SINE Alu -87 225 1 449 218 0 0 chr3 18341219 18341297 -209183281 + MER2 DNA MER2_type 268 345 0 375 272 107 0 chr3 18341403 18341506 -209183072 - L2 LINE L2 -27 3286 3173 2066 119 3 3 chr3 18342067 18342375 -209182203 + AluSx SINE Alu 1 308 0 208 237 0 0 chr3 18342434 18342472 -209182106 - L2 LINE L2 -90 3182 3145 224 196 0 0 chr3 18343075 18343121 -209181457 - L2 LINE L2 -237 3035 2990 1720 105 0 0 chr3 18344078 18344307 -209180271 - AluSg/x SINE Alu -5 307 79 261 263 139 34 chr3 18344602 18344697 -209179881 + MIR3 SINE MIR 20 132 -76 2251 78 0 7 chr3 18344697 18345006 -209179572 - AluSc SINE Alu 0 307 1 261 263 139 34 chr3 18345006 18345053 -209179525 + MIR3 SINE MIR 132 173 -35 549 273 0 8 chr3 18345499 18345620 -209178958 - MIR SINE MIR -59 149 30 680 168 56 25 chr3 18346104 18346265 -209178313 - FRAM SINE Alu -1 175 10 199 348 87 26 chr3 18346587 18346702 -209177876 + L2 LINE L2 3150 3271 -1 231 293 191 20 chr3 18349151 18349298 -209175280 + MIR3 SINE MIR 37 208 0 452 236 51 67 chr3 18350197 18350375 -209174203 + MER69A DNA AcHobo 1 175 -2 2131 80 13 35 chr3 18351073 18351384 -209173194 + AluSq SINE Alu 1 304 -9 704 163 0 59 chr3 18351877 18352012 -209172566 + FLAM_C SINE Alu 1 127 -6 25 75 0 0 chr3 18352012 18352065 -209172513 + AT_rich Low_complexity Low_complexity 1 53 0 243 339 46 28 chr3 18352836 18352945 -209171633 - MIR SINE MIR -76 132 22 22 35 0 0 chr3 18353473 18353502 -209171076 + AT_rich Low_complexity Low_complexity 1 29 0 2014 139 3 0 chr3 18353643 18353952 -209170626 + AluSx SINE Alu 1 310 -2 214 137 0 39 chr3 18354953 18355004 -209169574 + (TTTTC)n Simple_repeat Simple_repeat 3 51 0 228 67 0 0 chr3 18355417 18355447 -209169131 + (T)n Simple_repeat Simple_repeat 1 30 0 691 118 0 0 chr3 18355449 18355551 -209169027 - AluJo SINE Alu 0 312 211 1104 196 0 10 chr3 18355610 18355814 -209168764 - AluJo SINE Alu -104 208 7 951 273 70 0 chr3 18356104 18356346 -209168232 - MIR SINE MIR 0 262 4 2350 96 0 0 chr3 18356482 18356795 -209167783 - AluSq SINE Alu 0 313 1 1775 113 44 22 chr3 18357005 18357315 -209167263 - AluSg SINE Alu 0 318 3 45 34 0 0 chr3 18357341 18357400 -209167178 + AT_rich Low_complexity Low_complexity 1 59 0 216 278 0 0 chr3 18357619 18357673 -209166905 + (CATA)n Simple_repeat Simple_repeat 3 56 0 209 278 19 19 chr3 18359680 18359734 -209164844 + L2 LINE L2 3217 3270 -2 661 319 4 62 chr3 18359751 18360027 -209164551 - MIR SINE MIR 0 262 3 2066 140 0 6 chr3 18360148 18360462 -209164116 + AluJo SINE Alu 1 312 0 410 247 237 21 chr3 18362311 18362497 -209162081 + MIR SINE MIR 31 256 -6 225 276 0 52 chr3 18364110 18364226 -209160352 + A-rich Low_complexity Low_complexity 1 110 0 596 274 85 33 chr3 18364270 18364482 -209160096 - MIR SINE MIR -26 236 14 * 797 209 43 12 chr3 18364469 18364632 -209159946 + MER5B DNA MER1_type 11 178 0 300 303 52 42 chr3 18365106 18365265 -209159313 - MIR SINE MIR -69 193 21 304 300 62 23 chr3 18366446 18366576 -209158002 - MIR3 SINE MIR -10 198 64 661 182 23 15 chr3 18366986 18367118 -209157460 + FLAM_C SINE Alu 1 133 0 201 288 51 0 chr3 18367880 18367939 -209156639 - L2 LINE L2 -70 3202 3141 649 289 83 45 chr3 18367958 18368200 -209156378 + MIR SINE MIR 1 251 -11 277 348 16 71 chr3 18368294 18368547 -209156031 - L2 LINE L2 -218 3054 2816 532 286 177 38 chr3 18368752 18369208 -209155370 + L1M4 LINE L1 2809 3200 -2946 1708 165 25 0 chr3 18369208 18369493 -209155085 + AluJo SINE Alu 1 292 -20 532 286 177 38 chr3 18369493 18370472 -209154106 + L1M4 LINE L1 3200 4443 -1703 2202 115 0 0 chr3 18370806 18371118 -209153460 + AluSx SINE Alu 1 312 0 269 153 0 17 chr3 18371977 18372036 -209152542 + CT-rich Low_complexity Low_complexity 2 59 0 1256 185 80 0 chr3 18372440 18372716 -209151862 + AluJo SINE Alu 2 299 -13 1297 84 90 0 chr3 18373294 18373437 -209151141 + MER107 DNA MER1_type 3 166 -31 195 42 0 0 chr3 18373437 18373461 -209151117 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1297 84 90 0 chr3 18373461 18373495 -209151083 + MER107 DNA MER1_type 166 196 -1 180 304 128 20 chr3 18375409 18375511 -209149067 - L2 LINE L2 -18 3254 3142 222 346 77 0 chr3 18375811 18375915 -209148663 - L3 LINE CR1 -48 1529 1418 2256 105 0 0 chr3 18376278 18376582 -209147996 + AluSx SINE Alu 1 304 -8 267 289 13 0 chr3 18376595 18376671 -209147907 + MIR SINE MIR 186 262 0 566 314 39 39 chr3 18376690 18376919 -209147659 + MIR SINE MIR 28 256 -6 268 261 34 23 chr3 18377545 18377633 -209146945 + MIR SINE MIR 53 141 -67 276 254 99 0 chr3 18377671 18377742 -209146836 + MIR SINE MIR 114 191 -71 276 254 154 85 chr3 18377772 18377902 -209146676 - MIR SINE MIR -68 140 1 551 284 48 24 chr3 18377919 18378127 -209146451 + MIR SINE MIR 1 213 -49 266 234 219 31 chr3 18378262 18378390 -209146188 + MIR3 SINE MIR 43 194 -14 1053 266 99 27 chr3 18379027 18379511 -209145067 - LTR33 LTR ERVL -2 519 1 194 267 99 20 chr3 18379544 18379645 -209144933 - MIR SINE MIR -142 120 12 21 71 0 0 chr3 18379902 18379944 -209144634 + AT_rich Low_complexity Low_complexity 1 42 0 195 354 94 44 chr3 18380307 18380488 -209144090 - L2 LINE L2 -10 3262 3073 * 387 299 85 17 chr3 18380472 18380649 -209143929 + MIR SINE MIR 29 217 -45 399 308 130 43 chr3 18380815 18381572 -209143006 - L2 LINE L2 -190 3082 2245 266 253 133 0 chr3 18381814 18381897 -209142681 - MIR SINE MIR -70 192 99 236 277 8 92 chr3 18382404 18382534 -209142044 + MIR SINE MIR 111 229 -33 222 62 0 0 chr3 18383175 18383207 -209141371 + (TC)n Simple_repeat Simple_repeat 2 33 0 230 374 61 10 chr3 18383311 18383410 -209141168 - L2 LINE L2 -1 3271 3168 1454 249 59 32 chr3 18383507 18383948 -209140630 + LTR16C LTR ERVL 36 488 -3 203 369 78 0 chr3 18384028 18384114 -209140464 - L2 LINE L2 -25 3247 3150 1672 126 81 35 chr3 18384114 18384399 -209140179 + AluSg SINE Alu 1 298 -12 203 369 78 0 chr3 18384399 18384415 -209140163 - L2 LINE L2 -122 3150 3137 243 146 0 0 chr3 18384415 18384456 -209140122 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1889 155 10 0 chr3 18384466 18384770 -209139808 + AluJb SINE Alu 1 307 -5 378 177 21 10 chr3 18384781 18384877 -209139701 + GA-rich Low_complexity Low_complexity 4 100 0 479 299 58 102 chr3 18384879 18385030 -209139548 - L2 LINE L2 -113 3159 3003 2183 105 0 0 chr3 18385030 18385334 -209139244 - AluSx SINE Alu -8 304 1 479 299 58 102 chr3 18385334 18385526 -209139052 - L2 LINE L2 -269 3003 2831 867 194 61 0 chr3 18385615 18385780 -209138798 + FAM SINE Alu 1 175 0 454 161 46 8 chr3 18385802 18385932 -209138646 + GA-rich Low_complexity Low_complexity 4 138 0 292 213 39 8 chr3 18386628 18386708 -209137870 + L1MC/D LINE L1 5409 5490 -684 2072 104 7 20 chr3 18386708 18387007 -209137571 + AluSx SINE Alu 1 295 -17 292 213 39 8 chr3 18387007 18387018 -209137560 + L1MC/D LINE L1 5490 5499 -675 1911 138 16 0 chr3 18387330 18387634 -209136944 - AluSx SINE Alu -3 309 1 207 0 0 0 chr3 18388827 18388850 -209135728 + (A)n Simple_repeat Simple_repeat 1 23 0 319 292 94 10 chr3 18388922 18389092 -209135486 + MIR SINE MIR 22 212 -50 1929 138 3 0 chr3 18389421 18389712 -209134866 + AluSx SINE Alu 2 293 -19 1953 121 0 23 chr3 18389719 18390025 -209134553 + AluSx SINE Alu 1 299 -13 2110 90 10 20 chr3 18390509 18390809 -209133769 + AluSq SINE Alu 1 297 -16 1439 161 57 11 chr3 18391928 18392207 -209132371 - AluSg SINE Alu -18 292 1 483 245 77 13 chr3 18392441 18392625 -209131953 + L1ME3A LINE L1 5959 6162 -2 677 91 0 83 chr3 18392637 18392691 -209131887 - L1MA3 LINE L1 0 6305 6265 2321 76 13 0 chr3 18392691 18392993 -209131585 - AluSq SINE Alu -7 306 1 677 91 0 83 chr3 18392993 18393059 -209131519 - L1MA3 LINE L1 -40 6265 6195 853 195 0 0 chr3 18393074 18393247 -209131331 + AluJb SINE Alu 134 306 0 1728 148 4 0 chr3 18393377 18393641 -209130937 + AluJo SINE Alu 1 265 -47 299 198 136 12 chr3 18393992 18394073 -209130505 - MIR3 SINE MIR -10 198 108 1895 113 3 40 chr3 18394143 18394282 -209130296 + AluSq SINE Alu 1 144 -169 2634 35 0 0 chr3 18394282 18394593 -209129985 + AluY SINE Alu 1 311 0 1895 113 3 40 chr3 18394593 18394754 -209129824 + AluSq SINE Alu 144 290 -23 1947 130 0 32 chr3 18395043 18395358 -209129220 - AluSg SINE Alu -5 305 1 1669 145 52 0 chr3 18395362 18395658 -209128920 - AluSx SINE Alu 0 310 1 1592 171 0 17 chr3 18395660 18395947 -209128631 - AluJo SINE Alu -9 303 22 305 239 25 0 chr3 18395947 18396027 -209128551 - L1M4c LINE L1 -4556 1826 1689 * 3689 130 74 2 chr3 18396022 18396631 -209127947 + L1MC1 LINE L1 5453 6105 -228 318 133 0 50 chr3 18396632 18396692 -209127886 + AluJo SINE Alu 87 143 -159 * 1684 116 4 4 chr3 18396684 18396926 -209127652 + MER50 LTR ERV1 493 734 0 518 92 2 0 chr3 18397021 18397096 -209127482 - MER4-int LTR ERV1 -989 5609 5545 992 100 27 20 chr3 18397148 18397298 -209127280 + MER50-int LTR ERV1 6969 7119 -86 321 271 113 46 chr3 18397307 18397328 -209127250 + L1ME3 LINE L1 2070 2088 -4308 2029 122 0 7 chr3 18397328 18397623 -209126955 + AluSx SINE Alu 3 295 -17 321 271 113 46 chr3 18397623 18397752 -209126826 + L1ME3 LINE L1 2088 2230 -4166 276 212 53 76 chr3 18397755 18397769 -209126809 + L1ME3 LINE L1 2202 2215 -4181 2000 114 7 26 chr3 18397769 18398075 -209126503 + AluSx SINE Alu 1 300 -12 276 212 53 76 chr3 18398075 18398153 -209126425 + L1ME3 LINE L1 2215 2293 -4103 2059 104 7 3 chr3 18398153 18398441 -209126137 + AluSg1 SINE Alu 1 289 -20 276 212 53 76 chr3 18398441 18398479 -209126099 + L1ME3 LINE L1 2293 2330 -4066 287 282 86 8 chr3 18399744 18399861 -209124717 - MIR SINE MIR -33 229 104 252 324 57 29 chr3 18400614 18400719 -209123859 - MIR SINE MIR -63 145 38 308 270 43 26 chr3 18400900 18401015 -209123563 - MIR3 SINE MIR -32 176 60 237 162 206 0 chr3 18401051 18401119 -209123459 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 18402078 18402153 -209122425 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 18402148 18402332 -209122246 - MIR SINE MIR 0 262 75 201 314 43 14 chr3 18403208 18403278 -209121300 - MIR SINE MIR -90 118 47 817 152 0 30 chr3 18403540 18403672 -209120906 + FLAM_C SINE Alu 6 133 -10 21 0 0 0 chr3 18403806 18403827 -209120751 + AT_rich Low_complexity Low_complexity 1 21 0 1680 191 126 55 chr3 18403928 18404453 -209120125 - MER68 LTR ERV1 0 562 1 3478 121 31 0 chr3 18404606 18405087 -209119491 + MER1A DNA MER1_type 34 529 0 2332 82 3 0 chr3 18405513 18405818 -209118760 - AluSx SINE Alu -2 310 5 1511 159 62 38 chr3 18405852 18406142 -209118436 + AluJo SINE Alu 1 297 -15 2486 241 56 32 chr3 18406143 18407023 -209117555 + L1ME3 LINE L1 3571 4471 -1744 213 109 0 55 chr3 18407568 18407623 -209116955 + (TA)n Simple_repeat Simple_repeat 2 53 0 343 106 0 0 chr3 18407623 18407670 -209116908 - MER4E LTR ERV1 -69 697 651 641 256 118 13 chr3 18407689 18407927 -209116651 + L1MC4a LINE L1 5732 5994 -1814 2113 89 3 10 chr3 18408131 18408435 -209116143 + AluSx SINE Alu 1 302 -10 714 221 39 24 chr3 18408542 18408853 -209115725 + L1ME3 LINE L1 4544 6117 -122 784 129 187 0 chr3 18408946 18409085 -209115493 + FRAM SINE Alu 1 162 -14 348 144 31 62 chr3 18409085 18409182 -209115396 + L1ME3 LINE L1 6114 6207 -24 303 264 300 0 chr3 18409198 18409308 -209115270 - L2 LINE L2 -556 2758 2616 1130 53 0 13 chr3 18409326 18409476 -209115102 + AluSp/q SINE Alu 155 302 -11 287 282 86 8 chr3 18410816 18410933 -209113645 - MIR SINE MIR -33 229 104 252 324 57 29 chr3 18411686 18411791 -209112787 - MIR SINE MIR -63 145 38 308 270 43 26 chr3 18411972 18412087 -209112491 - MIR3 SINE MIR -32 176 60 247 162 206 0 chr3 18412123 18412191 -209112387 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 18413150 18413225 -209111353 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 18413220 18413404 -209111174 - MIR SINE MIR 0 262 75 198 0 0 0 chr3 18413583 18413605 -209110973 + (A)n Simple_repeat Simple_repeat 1 22 0 201 314 43 14 chr3 18414283 18414353 -209110225 - MIR SINE MIR -90 118 47 817 152 0 30 chr3 18414615 18414747 -209109831 + FLAM_C SINE Alu 6 133 -10 21 0 0 0 chr3 18414881 18414902 -209109676 + AT_rich Low_complexity Low_complexity 1 21 0 1698 189 126 55 chr3 18415003 18415528 -209109050 - MER68 LTR ERV1 0 562 1 3422 118 31 6 chr3 18415681 18416165 -209108413 + MER1A DNA MER1_type 34 529 0 2407 62 0 3 chr3 18416591 18416900 -209107678 - AluY SINE Alu -3 308 1 1536 131 39 50 chr3 18416900 18417070 -209107508 - L1MB3 LINE L1 -352 5831 5664 2097 94 10 0 chr3 18417070 18417358 -209107220 - AluSq SINE Alu -22 291 1 1536 131 39 50 chr3 18417358 18417469 -209107109 - L1MB3 LINE L1 -519 5664 5553 3530 157 8 8 chr3 18417713 18418325 -209106253 - L1MB8 LINE L1 0 6178 5567 288 243 53 74 chr3 18418390 18418579 -209105999 - L1MC5 LINE L1 -542 7419 7235 254 29 88 0 chr3 18418596 18418630 -209105948 - L1M4 LINE L1 -1225 4921 4885 1872 156 0 13 chr3 18418637 18418952 -209105626 - AluJb SINE Alu -1 311 1 1431 183 66 3 chr3 18418975 18419264 -209105314 - AluJo SINE Alu -3 309 3 470 308 101 17 chr3 18419300 18419490 -209105088 - L1MEc LINE L1 -6098 298 83 207 0 0 0 chr3 18419490 18419513 -209105065 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 470 308 101 17 chr3 18419513 18419559 -209105019 - L1MEc LINE L1 -6313 83 42 1212 220 69 40 chr3 18419561 18419713 -209104865 - L1MEc LINE L1 -5218 1178 1032 2082 101 0 0 chr3 18419713 18420010 -209104568 - AluSq SINE Alu 0 302 6 1212 220 69 40 chr3 18420010 18420278 -209104300 - L1MEc LINE L1 -5364 1032 745 1066 163 69 0 chr3 18420386 18420588 -209103990 - AluJo SINE Alu -12 300 85 2243 92 3 13 chr3 18420588 18420903 -209103675 - AluSp SINE Alu -1 312 1 1079 116 29 6 chr3 18421121 18421293 -209103285 + MER47A DNA MER2_type 70 245 -121 803 117 17 0 chr3 18421296 18421416 -209103162 + AluSg/x SINE Alu 177 298 -12 303 156 0 0 chr3 18421419 18421464 -209103114 + MER47A DNA MER2_type 322 366 0 363 297 103 7 chr3 18421492 18421647 -209102931 - MIR SINE MIR -73 189 20 204 333 19 0 chr3 18421854 18421908 -209102670 + L2 LINE L2 3205 3259 -13 1938 103 30 30 chr3 18422271 18422572 -209102006 - AluSg SINE Alu -9 301 1 2217 92 0 20 chr3 18423718 18424021 -209100557 + AluSq SINE Alu 12 308 -5 1918 119 54 0 chr3 18424227 18424521 -209100057 - AluSg SINE Alu 0 310 1 448 286 118 70 chr3 18424761 18425118 -209099460 - L1ME3 LINE L1 -196 5966 5593 1978 107 14 3 chr3 18425706 18425997 -209098581 - AluSx SINE Alu -18 294 1 1661 155 0 38 chr3 18426355 18426671 -209097907 + AluJb SINE Alu 1 304 -8 22 0 0 0 chr3 18426704 18426726 -209097852 + AT_rich Low_complexity Low_complexity 1 22 0 2284 88 0 0 chr3 18426726 18427022 -209097556 + AluY SINE Alu 1 296 -15 783 195 0 0 chr3 18427025 18427153 -209097425 - AluJo/FLAM SINE Alu -174 128 1 234 243 214 19 chr3 18427333 18427436 -209097142 + L2 LINE L2 3150 3272 0 236 323 47 0 chr3 18428227 18428322 -209096256 + MIR SINE MIR 64 163 -60 349 253 13 0 chr3 18428500 18428579 -209095999 + MIR SINE MIR 166 245 -17 232 227 130 64 chr3 18428658 18428770 -209095808 - MIR SINE MIR -42 220 87 2355 174 29 13 chr3 18428819 18429274 -209095304 - L1MB7 LINE L1 -208 5976 5515 369 0 0 0 chr3 18429304 18429345 -209095233 + (TG)n Simple_repeat Simple_repeat 2 42 0 1420 113 18 5 chr3 18429346 18429567 -209095011 - L1PA8 LINE L1 -10 6162 5939 192 205 26 0 chr3 18429975 18430014 -209094564 - L2 LINE L2 -43 3270 3231 1837 112 46 30 chr3 18430048 18430353 -209094225 - AluJb SINE Alu -2 310 1 311 281 52 10 chr3 18430420 18430516 -209094062 - L1ME LINE L1 -5019 1063 964 1494 243 121 56 chr3 18430531 18430794 -209093784 - L1ME LINE L1 -5220 850 606 2297 81 0 3 chr3 18430794 18431091 -209093487 - AluSq SINE Alu -17 296 1 1494 243 121 56 chr3 18431091 18431424 -209093154 - L1ME LINE L1 -5464 606 186 1966 125 14 0 chr3 18431424 18431720 -209092858 - AluSx SINE Alu -1 311 12 1494 243 121 56 chr3 18431720 18431914 -209092664 - L1ME LINE L1 -5884 186 6 198 0 0 0 chr3 18431973 18431995 -209092583 + (T)n Simple_repeat Simple_repeat 1 22 0 302 253 0 81 chr3 18432204 18432291 -209092287 - L2 LINE L2 -7 3265 3186 1927 114 35 7 chr3 18432292 18432581 -209091997 - AluSx SINE Alu -15 297 1 617 138 147 17 chr3 18432933 18433049 -209091529 + FLAM_C SINE Alu 1 131 -2 2011 107 0 21 chr3 18433584 18433873 -209090705 - AluSx SINE Alu -29 283 1 273 136 0 0 chr3 18434311 18434355 -209090223 + Charlie4 DNA MER1_type 1864 1907 -54 296 247 103 41 chr3 18434751 18434848 -209089730 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 18436722 18436749 -209087829 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 18436880 18436900 -209087678 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 18439517 18439552 -209085026 + AT_rich Low_complexity Low_complexity 1 35 0 1924 145 17 0 chr3 18439948 18440245 -209084333 - AluSx SINE Alu -10 302 1 1038 157 68 36 chr3 18440971 18441220 -209083358 - AluJo SINE Alu -55 257 1 1609 151 83 88 chr3 18441267 18441439 -209083139 + L1MB7 LINE L1 5736 5907 -277 1844 181 27 0 chr3 18441439 18441777 -209082801 - MER7A DNA MER2_type 0 346 2 1609 151 83 88 chr3 18441777 18441890 -209082688 + L1MB7 LINE L1 5907 6019 -165 2278 158 41 14 chr3 18441890 18442308 -209082270 + MSTB1 LTR MaLR 4 432 0 1609 151 83 88 chr3 18442308 18442453 -209082125 + L1MB7 LINE L1 6019 6165 -19 1325 164 12 12 chr3 18442648 18442892 -209081686 + AluJo SINE Alu 50 293 -19 2128 112 0 10 chr3 18442898 18443203 -209081375 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 18443212 18443237 -209081341 + AT_rich Low_complexity Low_complexity 1 25 0 1852 154 3 3 chr3 18443437 18443736 -209080842 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 18444087 18444115 -209080463 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 800 160 84 0 chr3 18445036 18445167 -209079411 - AluJb SINE Alu -14 298 157 426 226 128 49 chr3 18445554 18445718 -209078860 - MIR SINE MIR -52 210 34 2331 68 0 16 chr3 18445842 18446150 -209078428 - AluY SINE Alu -8 303 1 1960 112 39 3 chr3 18446206 18446491 -209078087 - AluSx SINE Alu -17 295 1 232 303 40 0 chr3 18446494 18446570 -209078008 - L3 LINE CR1 -162 1415 1337 897 112 0 0 chr3 18446897 18447022 -209077556 - FLAM_A SINE Alu 0 142 18 276 329 228 10 chr3 18447678 18447976 -209076602 - L3 LINE CR1 -631 946 584 254 250 279 10 chr3 18448076 18448180 -209076398 + L3 LINE CR1 1254 1385 -192 1546 156 11 25 chr3 18448202 18448478 -209076100 - AluJo SINE Alu -36 276 5 233 333 33 22 chr3 18448487 18448577 -209076001 + L3 LINE CR1 1378 1468 -109 523 290 208 8 chr3 18448612 18448986 -209075592 + L2 LINE L2 2753 3211 -102 1837 148 10 3 chr3 18448986 18449284 -209075294 - AluJb SINE Alu -12 300 1 2231 110 3 0 chr3 18449295 18449604 -209074974 - AluSx SINE Alu -2 310 1 2399 58 0 0 chr3 18450014 18450308 -209074270 - AluY SINE Alu -17 294 1 1823 135 7 14 chr3 18450743 18451031 -209073547 + AluJb SINE Alu 1 286 -26 1686 158 26 29 chr3 18451110 18451421 -209073157 - AluJb SINE Alu -2 310 1 1894 134 40 3 chr3 18451565 18451864 -209072714 + AluJo SINE Alu 1 310 -2 180 182 0 0 chr3 18452426 18452459 -209072119 + MIR3 SINE MIR 162 194 -14 1626 92 0 0 chr3 18453755 18453972 -209070606 - AluSx SINE Alu -95 217 1 305 262 94 34 chr3 18454254 18454403 -209070175 - MIR3 SINE MIR -1 207 50 30 59 0 0 chr3 18454754 18454805 -209069773 + AT_rich Low_complexity Low_complexity 1 51 0 1027 173 0 45 chr3 18455515 18455717 -209068861 - AluJo SINE Alu -69 243 51 906 225 12 0 chr3 18456175 18456348 -209068230 - FAM SINE Alu 0 175 1 297 0 0 0 chr3 18458361 18458394 -209066184 + (TG)n Simple_repeat Simple_repeat 2 34 0 1701 142 39 3 chr3 18458406 18458688 -209065890 - AluSx SINE Alu -20 292 1 2118 82 30 36 chr3 18459648 18459817 -209064761 - AluSx SINE Alu -9 303 135 1186 47 13 0 chr3 18459817 18459966 -209064612 - L1PA4 LINE L1 0 6155 6005 2118 82 30 36 chr3 18459966 18460101 -209064477 - AluSx SINE Alu -177 135 1 1997 145 0 0 chr3 18460477 18460781 -209063797 + AluJb SINE Alu 2 305 -7 2212 102 3 0 chr3 18460781 18461084 -209063494 + AluSc SINE Alu 1 304 -5 552 289 116 31 chr3 18462505 18462730 -209061848 - MIR SINE MIR 0 262 19 830 159 0 0 chr3 18462765 18462891 -209061687 - FLAM_C SINE Alu -7 126 1 1310 207 17 14 chr3 18464316 18464606 -209059972 - AluJo SINE Alu 0 312 22 1795 42 0 0 chr3 18464610 18464825 -209059753 + AluY SINE Alu 82 296 -15 353 277 0 0 chr3 18465294 18465377 -209059201 + L1ME LINE L1 5733 5815 -306 2373 80 0 0 chr3 18465477 18465779 -209058799 + AluSq SINE Alu 1 302 -11 22 0 0 0 chr3 18467322 18467344 -209057234 + AT_rich Low_complexity Low_complexity 1 22 0 336 271 139 0 chr3 18467365 18467516 -209057062 + L1MC5 LINE L1 7720 7891 -70 1398 206 25 0 chr3 18467560 18467836 -209056742 - AluJb SINE Alu -29 283 1 345 256 17 128 chr3 18468128 18468300 -209056278 - MER5B DNA MER1_type 0 178 26 258 105 0 0 chr3 18468348 18468386 -209056192 + (CAG)n Simple_repeat Simple_repeat 2 39 0 1994 97 3 10 chr3 18468880 18469169 -209055409 + AluSg SINE Alu 1 287 -23 313 329 43 21 chr3 18469235 18469375 -209055203 - MIR SINE MIR -117 145 3 1641 141 6 56 chr3 18470039 18470220 -209054358 - AluJb SINE Alu -8 304 144 1941 134 7 7 chr3 18470220 18470525 -209054053 - AluSx SINE Alu -7 305 1 1641 141 6 56 chr3 18470525 18470663 -209053915 - AluJb SINE Alu -168 144 1 1990 108 46 23 chr3 18470714 18471019 -209053559 + AluSx SINE Alu 1 312 0 226 309 81 49 chr3 18472022 18472075 -209052503 - MIR SINE MIR -66 142 92 2231 60 0 0 chr3 18472075 18472382 -209052196 + AluY SINE Alu 2 308 0 1985 133 0 3 chr3 18472392 18472694 -209051884 + AluSq SINE Alu 1 301 -12 226 309 81 49 chr3 18472694 18472751 -209051827 - MIR SINE MIR -124 84 16 2268 89 0 0 chr3 18472911 18473213 -209051365 + AluY SINE Alu 1 302 -9 1903 98 29 11 chr3 18473247 18473545 -209051033 - AluSc SINE Alu 0 303 1 1583 176 3 24 chr3 18473589 18473879 -209050699 - AluJo SINE Alu -20 292 9 231 0 266 0 chr3 18474006 18474070 -209050508 + (CAGTT)n Simple_repeat Simple_repeat 2 82 0 409 286 176 24 chr3 18474187 18474397 -209050181 - MIR SINE MIR 0 262 21 420 300 61 22 chr3 18474646 18474876 -209049702 + L1ME LINE L1 5551 5789 -332 546 283 128 13 chr3 18475523 18475749 -209048829 + L2 LINE L2 2885 3136 -177 846 129 0 23 chr3 18475992 18476124 -209048454 + FLAM_C SINE Alu 2 130 -3 23 0 0 0 chr3 18476169 18476192 -209048386 + AT_rich Low_complexity Low_complexity 1 23 0 482 179 0 0 chr3 18476196 18476274 -209048304 - FLAM SINE Alu -14 129 52 2320 59 10 13 chr3 18476626 18476930 -209047648 + AluY SINE Alu 1 303 -8 366 95 18 28 chr3 18477067 18477142 -209047436 - Alu SINE Alu -249 50 1 319 355 24 24 chr3 18477142 18477308 -209047270 - L2 LINE L2 -276 2996 2831 867 194 61 0 chr3 18477397 18477562 -209047016 + FAM SINE Alu 1 175 0 201 256 0 0 chr3 18477566 18477605 -209046973 + polypurine Low_complexity Low_complexity 3 41 0 806 103 16 54 chr3 18477605 18477790 -209046788 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 795 107 51 16 chr3 18477790 18478170 -209046408 + GA-rich Low_complexity Low_complexity 1 393 0 1862 119 28 3 chr3 18478616 18478901 -209045677 + AluJo SINE Alu 5 296 -16 448 260 32 26 chr3 18479090 18479244 -209045334 - MIR SINE MIR -43 219 65 448 291 75 20 chr3 18479370 18479569 -209045009 - MLT1K LTR MaLR -343 245 36 452 203 17 34 chr3 18479665 18479783 -209044795 - LTR33 LTR ERVL -7 514 399 774 241 132 34 chr3 18479814 18480109 -209044469 - LTR33 LTR ERVL -197 324 1 1384 179 108 14 chr3 18480782 18480806 -209043772 - MLT1F LTR MaLR -211 331 311 1642 212 50 16 chr3 18480806 18481183 -209043395 + MLT1B LTR MaLR 1 390 0 1384 179 108 14 chr3 18481183 18481455 -209043123 - MLT1F LTR MaLR -231 311 7 289 267 100 0 chr3 18481895 18481985 -209042593 - MIR3 SINE MIR -23 185 87 526 317 35 20 chr3 18481995 18482197 -209042381 - MIR SINE MIR -10 252 48 447 220 40 90 chr3 18482672 18482849 -209041729 - MIR3 SINE MIR -12 196 29 349 353 53 11 chr3 18482958 18483145 -209041433 + MIR SINE MIR 2 196 -66 765 148 23 0 chr3 18483146 18483274 -209041304 + FLAM_A SINE Alu 2 132 -1 611 109 10 0 chr3 18483357 18483458 -209041120 - L1MA8 LINE L1 -1 6290 6189 511 265 40 13 chr3 18483694 18483845 -209040733 + MIR SINE MIR 36 190 -72 480 293 26 47 chr3 18484000 18484232 -209040346 - MIR SINE MIR -16 246 20 242 177 242 0 chr3 18484251 18484313 -209040265 + L2 LINE L2 3194 3270 -2 187 235 196 0 chr3 18486624 18486675 -209037903 + L2 LINE L2 3230 3290 -23 * 196 174 22 65 chr3 18486643 18486689 -209037889 + L2 LINE L2 3217 3260 -12 1782 167 3 7 chr3 18486725 18487019 -209037559 + AluJo SINE Alu 1 293 -19 1694 115 84 0 chr3 18487025 18487310 -209037268 + AluSg SINE Alu 1 307 0 241 308 95 53 chr3 18487367 18487536 -209037042 + L2 LINE L2 2679 2854 -460 714 284 42 21 chr3 18488624 18488863 -209035715 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 18488885 18489025 -209035553 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 18489074 18489360 -209035218 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 18489393 18489562 -209035016 + L1MB7 LINE L1 6007 6173 -11 285 300 80 0 chr3 18489732 18489832 -209034746 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 18489871 18489983 -209034595 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 18490063 18490114 -209034464 - LTR67 LTR ERVL 0 557 508 1891 114 0 0 chr3 18490968 18491231 -209033347 + AluSx SINE Alu 1 263 -49 407 228 177 32 chr3 18491285 18491443 -209033135 - MIR SINE MIR -62 200 20 190 279 132 0 chr3 18491458 18491526 -209033052 + MIR3 SINE MIR 78 154 -54 216 236 6 35 chr3 18492403 18492461 -209032117 + MIR SINE MIR 95 154 -61 2379 65 0 3 chr3 18492570 18492878 -209031700 - AluY SINE Alu -4 307 1 305 296 74 22 chr3 18492878 18493013 -209031565 + MIR3 SINE MIR 64 205 -3 225 320 120 51 chr3 18493394 18493827 -209030751 + L2 LINE L2 2652 3113 -159 920 128 0 7 chr3 18493833 18493974 -209030604 - AluJb SINE Alu -172 140 1 1361 119 5 5 chr3 18494757 18494967 -209029611 - AluJb SINE Alu -4 308 99 3383 167 21 41 chr3 18495695 18495771 -209028807 + L1MB7 LINE L1 5413 5489 -695 2133 109 3 3 chr3 18495771 18496074 -209028504 + AluSx SINE Alu 1 303 -9 3383 167 21 41 chr3 18496074 18496709 -209027869 + L1MB7 LINE L1 5489 6110 -74 2054 103 0 62 chr3 18496771 18497092 -209027486 - AluSx SINE Alu -11 301 1 400 82 66 0 chr3 18497095 18497156 -209027422 + L1MB7 LINE L1 6114 6178 -6 408 273 251 0 chr3 18497662 18497845 -209026733 - MIR SINE MIR 0 262 34 473 205 9 0 chr3 18498180 18498292 -209026286 + GA-rich Low_complexity Low_complexity 1 113 0 2056 86 65 0 chr3 18498526 18498818 -209025760 - AluSx SINE Alu -1 311 1 2277 90 0 6 chr3 18498929 18499241 -209025337 + AluSg SINE Alu 1 310 0 193 322 147 0 chr3 18499345 18499488 -209025090 - MIR SINE MIR 0 262 99 2058 124 0 0 chr3 18499783 18500081 -209024497 + AluSx SINE Alu 1 298 -14 214 300 127 32 chr3 18500258 18500478 -209024100 - L2 LINE L2 -69 3203 2963 261 301 79 4 chr3 18500547 18500699 -209023879 - MIR SINE MIR -55 153 35 255 228 22 76 chr3 18501095 18501187 -209023391 + MIR SINE MIR 65 151 -57 478 259 42 35 chr3 18501409 18501637 -209022941 - MIR3 SINE MIR -25 237 11 595 341 18 27 chr3 18501980 18502203 -209022375 - MIR SINE MIR -40 222 2 411 213 74 9 chr3 18502225 18502333 -209022245 + MER5B DNA MER1_type 1 115 -63 424 239 69 11 chr3 18502851 18503003 -209021575 - L1MC/D LINE L1 -916 5443 5313 1684 148 0 11 chr3 18503436 18503713 -209020865 - AluJb SINE Alu -34 278 5 395 314 131 21 chr3 18504392 18504675 -209019903 + L2 LINE L2 2848 3161 -111 455 220 107 94 chr3 18504761 18504920 -209019658 + MIR3 SINE MIR 4 164 -44 321 259 136 5 chr3 18505196 18505341 -209019237 + MIR SINE MIR 25 185 -77 253 265 132 29 chr3 18505416 18505552 -209019026 + MIR SINE MIR 91 240 -22 614 262 14 0 chr3 18506409 18506563 -209018015 + MIR SINE MIR 39 193 -60 1263 176 0 0 chr3 18507703 18507919 -209016659 + AluJo SINE Alu 85 300 -12 289 214 12 71 chr3 18507943 18508027 -209016551 - L1ME LINE L1 -356 5814 5736 1136 134 0 0 chr3 18508028 18508200 -209016378 - FRAM SINE Alu -7 169 1 2228 110 0 0 chr3 18508396 18508704 -209015874 - AluSx SINE Alu -1 311 4 485 308 31 13 chr3 18508707 18508866 -209015712 + MIR SINE MIR 61 222 -40 264 161 113 0 chr3 18509096 18509158 -209015420 + MIR SINE MIR 119 187 -75 195 309 106 16 chr3 18509456 18509644 -209014934 + L2 LINE L2 2725 2929 -385 2083 109 13 16 chr3 18509865 18510178 -209014400 - AluSx SINE Alu 0 312 1 416 277 208 0 chr3 18510260 18510419 -209014159 + MIR SINE MIR 58 249 -13 340 207 126 0 chr3 18510427 18510514 -209014064 - MER53 DNA DNA 0 189 92 3415 162 41 25 chr3 18510587 18511228 -209013350 - MER82 DNA MER2_type -1 652 2 189 0 0 0 chr3 18511242 18511263 -209013315 + (TG)n Simple_repeat Simple_repeat 2 22 0 530 196 62 84 chr3 18511300 18511470 -209013108 + L1MC5 LINE L1 7688 7853 -108 2150 102 3 3 chr3 18511470 18511765 -209012813 - AluSp SINE Alu -18 295 1 530 196 62 84 chr3 18511765 18511819 -209012759 + L1MC5 LINE L1 7853 7907 -54 201 162 0 0 chr3 18511895 18511932 -209012646 + T-rich Low_complexity Low_complexity 1 37 0 465 331 41 0 chr3 18511981 18512153 -209012425 + MIR3 SINE MIR 24 202 -6 2051 96 0 30 chr3 18512438 18512741 -209011837 + AluSx SINE Alu 1 294 -18 459 296 62 6 chr3 18512786 18512948 -209011630 - L2 LINE L2 -183 3089 2919 240 301 79 10 chr3 18513199 18513332 -209011246 - MIR SINE MIR -63 145 5 246 345 0 0 chr3 18514306 18514393 -209010185 - MIR SINE MIR -19 243 157 335 227 57 23 chr3 18514801 18514889 -209009689 + MIR SINE MIR 108 198 -64 277 210 32 0 chr3 18514930 18514992 -209009586 - MER5B DNA MER1_type -63 115 52 1047 161 62 13 chr3 18515213 18515491 -209009087 - MER2 DNA MER2_type 0 345 2 2618 183 67 17 chr3 18515881 18516460 -209008118 - L1MB7 LINE L1 0 6184 5577 234 244 128 13 chr3 18516462 18516540 -209008038 - MIR3 SINE MIR -54 154 68 266 215 182 25 chr3 18518163 18518284 -209006294 + MIR3 SINE MIR 4 143 -65 747 258 131 10 chr3 18518341 18518539 -209006039 - MIR SINE MIR -29 233 12 196 202 236 56 chr3 18518691 18518780 -209005798 + L2 LINE L2 3208 3312 -1 852 264 39 0 chr3 18519926 18520180 -209004398 - L1MB7 LINE L1 0 6184 5921 2066 133 0 3 chr3 18520334 18520636 -209003942 - AluSx SINE Alu -11 301 1 1711 174 75 3 chr3 18521090 18521411 -209003167 - MER2 DNA MER2_type 0 344 1 859 205 60 10 chr3 18522065 18522265 -209002313 + L1MC4a LINE L1 5408 5617 -2191 2341 202 42 8 chr3 18522275 18522775 -209001803 - L1MB5 LINE L1 -167 6007 5491 2285 84 0 0 chr3 18522791 18523087 -209001491 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 18523109 18523133 -209001445 + AT_rich Low_complexity Low_complexity 1 24 0 1235 205 12 0 chr3 18523149 18523408 -209001170 - L1MB5 LINE L1 -970 5176 4915 765 240 47 34 chr3 18523407 18523640 -209000938 + L1MC4a LINE L1 5600 5835 -1973 * 1796 131 0 51 chr3 18523731 18524045 -209000533 - AluSx SINE Alu -14 298 1 2256 105 0 0 chr3 18524188 18524493 -209000085 + AluSx SINE Alu 1 305 -7 1520 169 0 4 chr3 18524620 18524875 -208999703 - AluJb SINE Alu -58 254 1 235 245 0 0 chr3 18524950 18525003 -208999575 - MLT1H LTR MaLR -13 536 484 234 321 92 9 chr3 18525067 18525176 -208999402 - MIR3 SINE MIR -45 163 46 344 273 145 29 chr3 18525563 18525735 -208998843 + MER117 DNA MER1_type 6 197 0 1333 195 30 34 chr3 18527122 18527420 -208997158 - MLT1C LTR MaLR 0 467 171 372 207 264 8 chr3 18527470 18527591 -208996987 - MLT1C LTR MaLR -264 203 52 824 139 16 0 chr3 18528275 18528404 -208996174 - FLAM_C SINE Alu -12 131 1 402 321 107 0 chr3 18528640 18528771 -208995807 - L2 LINE L2 -2 3270 3126 413 282 67 26 chr3 18528818 18529013 -208995565 - MIR SINE MIR -1 261 59 447 317 134 14 chr3 18529034 18529265 -208995313 - MIR SINE MIR -7 255 13 454 243 182 60 chr3 18529997 18530196 -208994382 - MIR SINE MIR 0 262 38 510 212 34 25 chr3 18530565 18530683 -208993895 - MIR SINE MIR -83 179 61 421 107 333 0 chr3 18530974 18531049 -208993529 - U6 snRNA snRNA -7 100 1 1884 116 40 7 chr3 18531608 18531910 -208992668 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 18532013 18532046 -208992532 + (T)n Simple_repeat Simple_repeat 1 33 0 428 228 55 55 chr3 18532093 18532136 -208992442 - L1ME4a LINE L1 -16 6105 6063 2132 121 3 0 chr3 18532136 18532443 -208992135 + AluSc SINE Alu 1 308 -1 428 228 55 55 chr3 18532443 18532544 -208992034 - L1ME4a LINE L1 -57 6064 5961 24 0 0 0 chr3 18533313 18533337 -208991241 + AT_rich Low_complexity Low_complexity 1 24 0 1280 157 4 30 chr3 18533644 18533879 -208990699 + AluJo SINE Alu 1 229 -83 1640 141 74 0 chr3 18534083 18534352 -208990226 + AluJo SINE Alu 1 289 -23 2156 104 17 0 chr3 18534851 18535149 -208989429 + AluSx SINE Alu 1 303 -9 842 205 6 0 chr3 18535164 18535330 -208989248 + AluJb SINE Alu 137 303 -9 380 206 0 41 chr3 18535431 18535528 -208989050 - L1MB8 LINE L1 -1 6177 6085 1531 173 0 0 chr3 18535657 18535906 -208988672 + AluJb SINE Alu 1 249 -63 2188 82 0 0 chr3 18536257 18536561 -208988017 + AluSg SINE Alu 1 304 0 505 248 24 16 chr3 18536562 18536687 -208987891 - MER3 DNA MER1_type -71 138 13 524 276 46 7 chr3 18536708 18536860 -208987718 + MIR SINE MIR 98 255 -7 302 314 0 0 chr3 18536940 18537010 -208987568 - L2 LINE L2 -15 3298 3229 265 267 128 0 chr3 18537080 18537166 -208987412 + L2 LINE L2 3217 3313 0 932 180 0 11 chr3 18538202 18538380 -208986198 - FRAM SINE Alu -8 168 1 1939 150 3 0 chr3 18538538 18538845 -208985733 - AluSx SINE Alu -4 308 1 832 136 0 0 chr3 18540439 18540557 -208984021 - 5S rRNA rRNA -1 120 3 254 263 127 25 chr3 18540762 18540880 -208983698 + L1P LINE L1 4883 5012 -1134 1836 161 0 0 chr3 18540915 18541207 -208983371 - AluJb SINE Alu -15 297 6 261 196 0 36 chr3 18541760 18541816 -208982762 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 18542387 18542408 -208982170 + AT_rich Low_complexity Low_complexity 1 21 0 599 108 0 0 chr3 18542690 18542773 -208981805 + AluS SINE Alu 2 84 -228 293 254 173 76 chr3 18542800 18542997 -208981581 - MIR SINE MIR -46 216 1 441 319 296 2 chr3 18543325 18543830 -208980748 - L2 LINE L2 -6 3307 2637 593 120 54 0 chr3 18544058 18544150 -208980428 + U6 snRNA snRNA 8 104 -3 * 1251 181 127 39 chr3 18544148 18544486 -208980092 - Charlie1b DNA MER1_type -155 368 1 2244 67 7 10 chr3 18545488 18545788 -208978790 + AluY SINE Alu 1 299 -12 378 0 0 0 chr3 18545792 18545834 -208978744 + (TG)n Simple_repeat Simple_repeat 1 42 0 455 288 90 42 chr3 18546315 18546411 -208978167 - MIR SINE MIR -16 246 156 2116 81 0 36 chr3 18546411 18546720 -208977858 + AluY SINE Alu 1 298 -13 455 288 90 42 chr3 18546720 18546835 -208977743 - MIR SINE MIR -106 156 25 606 175 203 89 chr3 18547871 18548162 -208976416 - MER33 DNA MER1_type 0 324 1 561 121 0 0 chr3 18548189 18548272 -208976306 + AluY SINE Alu 217 299 -12 2222 89 3 3 chr3 18548809 18549111 -208975467 + AluY SINE Alu 1 302 -9 229 244 37 85 chr3 18549139 18549221 -208975357 + MIR SINE MIR 77 154 -108 620 296 9 66 chr3 18549228 18549348 -208975230 - MIR SINE MIR 0 262 159 1983 116 3 3 chr3 18549348 18549642 -208974936 - AluY SINE Alu -17 294 1 620 296 9 66 chr3 18549642 18549747 -208974831 - MIR SINE MIR -103 159 50 2489 110 0 21 chr3 18549832 18549853 -208974725 - L1PA14 LINE L1 -2 6159 6139 2198 93 14 0 chr3 18549853 18550143 -208974435 + AluSx SINE Alu 1 294 -18 2489 110 0 21 chr3 18550143 18550494 -208974084 - L1PA14 LINE L1 -22 6139 5795 668 262 48 27 chr3 18550540 18550727 -208973851 - L2 LINE L2 -6 3307 3117 468 157 95 48 chr3 18550738 18550779 -208973799 + MER44D DNA MER2_type 44 82 -2409 1957 150 7 0 chr3 18550779 18551073 -208973505 + AluSx SINE Alu 2 297 -15 2483 72 13 0 chr3 18551075 18551382 -208973196 + AluY SINE Alu 1 311 0 468 157 95 48 chr3 18551382 18551484 -208973094 + MER44D DNA MER2_type 82 467 -142 186 167 0 0 chr3 18551579 18551615 -208972963 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 264 283 57 38 chr3 18552276 18552435 -208972143 - MIR SINE MIR -35 227 66 2293 115 0 19 chr3 18552869 18553183 -208971395 - AluSx SINE Alu -2 310 3 311 256 87 29 chr3 18553265 18553437 -208971141 - L1MC4 LINE L1 -169 7873 7692 824 128 15 15 chr3 18553437 18553570 -208971008 - AluJo SINE Alu -173 139 7 1312 198 116 75 chr3 18553626 18554066 -208970512 - MLT1C LTR MaLR -4 463 6 418 260 120 41 chr3 18554072 18554085 -208970493 - L1MC4 LINE L1 -413 7629 7618 2229 125 0 3 chr3 18554085 18554389 -208970189 - AluSx SINE Alu -9 303 1 418 260 120 41 chr3 18554389 18554617 -208969961 - L1MC4 LINE L1 -424 7618 7369 233 222 49 49 chr3 18554796 18554877 -208969701 - L1MD3 LINE L1 -855 7140 7060 1833 157 13 38 chr3 18554890 18555208 -208969370 - AluSx SINE Alu 0 312 3 909 153 0 0 chr3 18555209 18555340 -208969238 - Tigger3(Golem) DNA MER2_type -2852 177 47 2526 137 59 23 chr3 18555377 18555402 -208969176 + Tigger3(Golem) DNA MER2_type 2540 2563 -466 755 154 0 0 chr3 18555402 18555519 -208969059 + FLAM_C SINE Alu 1 117 -16 2526 137 59 23 chr3 18555519 18555966 -208968612 + Tigger3(Golem) DNA MER2_type 2563 3029 0 308 302 63 63 chr3 18556268 18556457 -208968121 - MIR3 SINE MIR -13 195 7 939 9 0 0 chr3 18556789 18556894 -208967684 - AluYa5/8 SINE Alu -2 308 204 312 263 54 46 chr3 18556960 18557152 -208967426 - MLT1J1 LTR MaLR -7 443 243 * 476 252 19 0 chr3 18557147 18557254 -208967324 - MLT1J1 LTR MaLR -337 109 1 1688 181 3 0 chr3 18557784 18558071 -208966507 + AluJb SINE Alu 1 288 -24 2407 86 0 7 chr3 18558530 18558832 -208965746 + AluSg1 SINE Alu 1 300 -9 347 274 43 8 chr3 18559659 18559776 -208964802 - MIR SINE MIR -107 155 35 802 166 114 36 chr3 18560107 18560240 -208964338 - MER6B DNA MER2_type -656 209 55 2190 112 67 14 chr3 18560240 18560596 -208963982 - THE1C LTR MaLR 0 375 1 802 166 114 36 chr3 18560596 18560655 -208963923 - MER6B DNA MER2_type -810 55 2 198 235 51 71 chr3 18562312 18562410 -208962168 + MIR3 SINE MIR 112 207 -1 1862 155 16 29 chr3 18562724 18563034 -208961544 + AluJb SINE Alu 1 306 -6 306 291 45 0 chr3 18563743 18563877 -208960701 + MIR SINE MIR 53 192 -70 2258 57 4 11 chr3 18563890 18564171 -208960407 + AluY SINE Alu 23 301 -10 1080 110 43 0 chr3 18564172 18564336 -208960242 + AluSg/x SINE Alu 131 301 -9 2187 81 0 0 chr3 18564895 18565153 -208959425 - AluSq SINE Alu -29 284 27 385 266 91 15 chr3 18565188 18565378 -208959200 + MIR SINE MIR 37 239 -23 180 0 0 0 chr3 18565601 18565621 -208958957 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2275 94 0 10 chr3 18566066 18566364 -208958214 + AluSq SINE Alu 1 295 -18 1613 158 52 7 chr3 18566501 18566773 -208957805 + AluJb SINE Alu 27 310 -2 437 296 148 0 chr3 18567000 18567162 -208957416 + MIR SINE MIR 2 187 -75 1233 192 103 12 chr3 18567572 18567901 -208956677 - MER93a LTR ERV1 0 402 1 266 224 122 31 chr3 18567918 18568016 -208956562 - MARNA DNA Mariner -236 350 244 2291 109 0 0 chr3 18568477 18568780 -208955798 - AluSx SINE Alu -9 303 1 2395 104 3 0 chr3 18569122 18569431 -208955147 - AluSp SINE Alu -3 310 1 2213 108 7 19 chr3 18569938 18570245 -208954333 + AluSx SINE Alu 1 303 -9 2032 136 17 0 chr3 18570563 18570864 -208953714 - AluSx SINE Alu -6 306 1 192 40 0 0 chr3 18572057 18572082 -208952496 + (A)n Simple_repeat Simple_repeat 1 25 0 289 279 72 9 chr3 18572154 18572265 -208952313 + MIR SINE MIR 24 141 -67 2021 141 3 0 chr3 18572653 18572944 -208951634 + AluSx SINE Alu 2 293 -19 2062 122 0 23 chr3 18572951 18573255 -208951323 + AluSx SINE Alu 1 297 -15 2242 90 10 20 chr3 18573739 18574040 -208950538 + AluSq SINE Alu 1 298 -15 1549 161 57 11 chr3 18575159 18575438 -208949140 - AluSg SINE Alu -18 292 1 481 245 77 13 chr3 18575672 18575856 -208948722 + L1ME3A LINE L1 5959 6162 -2 316 130 0 0 chr3 18575868 18575922 -208948656 - L1MA3 LINE L1 0 6305 6252 2344 100 0 19 chr3 18575922 18576233 -208948345 - AluSx SINE Alu -7 305 1 274 136 0 0 chr3 18576671 18576715 -208947863 + Charlie4 DNA MER1_type 1864 1907 -54 252 247 103 41 chr3 18577111 18577208 -208947370 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 18579082 18579109 -208945469 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 18579240 18579260 -208945318 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 18581877 18581912 -208942666 + AT_rich Low_complexity Low_complexity 1 35 0 2047 145 17 0 chr3 18582308 18582605 -208941973 - AluSx SINE Alu -10 302 1 1152 149 123 29 chr3 18583312 18583588 -208940990 - AluJo SINE Alu 0 302 1 1619 146 83 88 chr3 18583635 18583807 -208940771 + L1MB7 LINE L1 5736 5907 -277 1893 175 27 0 chr3 18583807 18584145 -208940433 - MER7A DNA MER2_type 0 346 2 1619 146 83 88 chr3 18584145 18584258 -208940320 + L1MB7 LINE L1 5907 6019 -165 2267 158 41 14 chr3 18584258 18584676 -208939902 + MSTB1 LTR MaLR 4 432 0 1619 146 83 88 chr3 18584676 18584821 -208939757 + L1MB7 LINE L1 6019 6165 -19 1416 164 12 12 chr3 18585016 18585260 -208939318 + AluJo SINE Alu 50 293 -19 2255 112 0 10 chr3 18585266 18585571 -208939007 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 18585580 18585605 -208938973 + AT_rich Low_complexity Low_complexity 1 25 0 1967 154 3 3 chr3 18585805 18586104 -208938474 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 18586455 18586483 -208938095 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 1764 130 4 29 chr3 18587139 18587245 -208937333 + AluSx SINE Alu 31 138 -174 2103 127 13 3 chr3 18587245 18587552 -208937026 + AluSx SINE Alu 1 310 -2 1764 130 4 29 chr3 18587552 18587722 -208936856 + AluSx SINE Alu 138 300 -12 907 130 0 8 chr3 18587816 18587947 -208936631 + FRAM SINE Alu 28 157 -19 680 115 34 115 chr3 18588219 18588367 -208936211 + AluJo SINE Alu 1 136 -176 2270 109 0 3 chr3 18588972 18589276 -208935302 - AluSc SINE Alu -6 303 1 2402 84 16 0 chr3 18590327 18590635 -208933943 - AluSq SINE Alu 0 313 1 868 158 11 92 chr3 18591186 18591370 -208933208 - AluJb SINE Alu -9 303 135 423 0 0 0 chr3 18591373 18591420 -208933158 + (TG)n Simple_repeat Simple_repeat 2 48 0 1186 103 0 27 chr3 18591567 18591751 -208932827 - AluY SINE Alu -17 294 116 1089 75 0 8 chr3 18591792 18591925 -208932653 - AluYb8 SINE Alu -186 132 1 2028 106 40 7 chr3 18591937 18592212 -208932366 - AluSq SINE Alu -23 290 7 2017 168 0 0 chr3 18592301 18592610 -208931968 + AluJb SINE Alu 1 309 -3 12366 48 6 5 chr3 18592711 18595023 -208929555 - L1PA5 LINE L1 0 6154 3844 1505 152 5 0 chr3 18595142 18595359 -208929219 - AluSx SINE Alu -92 220 3 560 167 70 0 chr3 18595686 18595800 -208928778 + FAM SINE Alu 29 150 -35 1941 97 93 14 chr3 18595962 18596240 -208928338 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr3 18596251 18596276 -208928302 + AT_rich Low_complexity Low_complexity 1 25 0 1516 195 0 14 chr3 18596283 18596580 -208927998 + AluJo SINE Alu 1 293 -19 2314 113 7 0 chr3 18596721 18597030 -208927548 + AluSx SINE Alu 2 312 0 2015 103 39 14 chr3 18597816 18598097 -208926481 + AluSq SINE Alu 1 288 -25 555 174 0 0 chr3 18598158 18598244 -208926334 + AluJ/FLAM SINE Alu 2 87 -225 1228 153 20 15 chr3 18598244 18598440 -208926138 + AluJo SINE Alu 21 217 -95 1465 199 30 0 chr3 18598756 18599022 -208925556 - AluSx SINE Alu -38 274 1 22 35 0 0 chr3 18599152 18599181 -208925397 + AT_rich Low_complexity Low_complexity 1 29 0 349 214 179 21 chr3 18599435 18599575 -208925003 - MIR SINE MIR -20 242 81 1768 165 13 16 chr3 18599758 18600061 -208924517 - AluJo SINE Alu -10 302 1 619 246 242 20 chr3 18600288 18600766 -208923812 - L2 LINE L2 0 3313 2720 1460 124 5 10 chr3 18600789 18600998 -208923580 - AluSg/x SINE Alu -18 294 87 816 179 35 7 chr3 18601018 18601163 -208923415 + AluJb SINE Alu 3 151 -161 219 186 34 34 chr3 18601187 18601246 -208923332 - L2 LINE L2 -1017 2297 2239 193 244 61 130 chr3 18601239 18601295 -208923283 + MIR SINE MIR 133 180 -82 * 2368 64 0 3 chr3 18601295 18601578 -208923000 + AluY SINE Alu 1 282 -29 190 0 0 0 chr3 18601578 18601599 -208922979 + (CAAAA)n Simple_repeat Simple_repeat 2 170 0 193 244 61 130 chr3 18601599 18601656 -208922922 + MIR SINE MIR 180 239 -23 387 363 41 7 chr3 18601657 18601803 -208922775 + MER91A DNA MER1_type 14 164 -32 27 49 0 0 chr3 18601983 18602024 -208922554 + AT_rich Low_complexity Low_complexity 1 41 0 2104 101 14 0 chr3 18602024 18602320 -208922258 + AluSq SINE Alu 1 300 -13 521 190 30 0 chr3 18602712 18602812 -208921766 + U13 snRNA snRNA 1 103 -1 401 233 22 11 chr3 18602844 18602934 -208921644 + HAL1 LINE L1 446 536 -1971 543 271 18 18 chr3 18603019 18603189 -208921389 + HAL1 LINE L1 744 913 -1594 1478 154 20 43 chr3 18603198 18603497 -208921081 + AluJb SINE Alu 21 312 0 949 247 211 36 chr3 18603499 18603632 -208920946 + HAL1 LINE L1 1296 1404 -1103 2203 85 13 7 chr3 18603632 18603939 -208920639 + AluSq SINE Alu 1 309 -4 949 247 211 36 chr3 18603939 18604124 -208920454 + HAL1 LINE L1 1404 1555 -952 2042 108 7 13 chr3 18604124 18604429 -208920149 - AluSx SINE Alu -9 303 1 949 247 211 36 chr3 18604429 18604579 -208919999 + HAL1 LINE L1 1555 1847 -660 240 233 27 27 chr3 18604662 18604735 -208919843 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 18604869 18605019 -208919559 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 18605029 18605327 -208919251 + AluSx SINE Alu 8 312 0 2040 124 3 0 chr3 18605333 18605639 -208918939 + AluSq SINE Alu 1 307 -6 2373 62 0 0 chr3 18605670 18605962 -208918616 + AluY SINE Alu 1 292 -19 2187 110 0 0 chr3 18605982 18606283 -208918295 + AluSx SINE Alu 1 301 -11 255 196 89 0 chr3 18606284 18606340 -208918238 + AluSp SINE Alu 136 196 -107 524 158 32 21 chr3 18606340 18606435 -208918143 + FLAM_C SINE Alu 35 130 -13 1979 149 0 3 chr3 18606502 18606810 -208917768 + AluJb SINE Alu 1 307 -5 271 373 0 0 chr3 18606967 18607069 -208917509 + MIR SINE MIR 141 242 -20 896 132 14 0 chr3 18607351 18607495 -208917083 - AluSx SINE Alu -118 194 49 1753 126 8 0 chr3 18607589 18607850 -208916728 + AluSx SINE Alu 42 304 -8 576 282 69 46 chr3 18607863 18608228 -208916350 + L2 LINE L2 2734 3311 -2 798 97 132 0 chr3 18608735 18608849 -208915729 + AluSq/x SINE Alu 5 133 -179 901 47 0 0 chr3 18608915 18609022 -208915556 - L1P LINE L1 -2280 3866 3760 1364 175 0 12 chr3 18609183 18609440 -208915138 + AluJb SINE Alu 43 296 -16 671 173 0 65 chr3 18609716 18609855 -208914723 + FLAM_C SINE Alu 1 130 -3 2038 78 32 11 chr3 18609926 18610208 -208914370 - AluSx SINE Alu -24 288 1 3624 160 17 8 chr3 18610230 18610868 -208913710 + L1MB4 LINE L1 5477 6120 -60 1937 147 0 0 chr3 18611545 18611838 -208912740 + AluSq SINE Alu 9 301 -12 2051 89 20 10 chr3 18612311 18612603 -208911975 + AluSp SINE Alu 1 295 -18 339 171 66 0 chr3 18612603 18612679 -208911899 - L1MB8 LINE L1 -57 6121 6041 228 35 0 0 chr3 18612680 18612709 -208911869 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 544 169 0 0 chr3 18613450 18613539 -208911039 - AluJ/FLAM SINE Alu -222 90 2 1630 175 3 7 chr3 18613816 18614113 -208910465 - AluJb SINE Alu -16 296 1 1011 112 35 231 chr3 18614115 18614282 -208910296 - Tigger2 DNA MER2_type -2175 543 345 1971 142 0 0 chr3 18614282 18614577 -208910001 - AluSx SINE Alu -17 295 1 1011 112 35 231 chr3 18614577 18614624 -208909954 - Tigger2 DNA MER2_type -2373 345 419 1736 108 59 35 chr3 18614624 18614911 -208909667 - AluSx SINE Alu -18 294 1 1011 112 35 231 chr3 18614911 18615042 -208909536 - Tigger2 DNA MER2_type -2298 420 265 2109 112 0 0 chr3 18615042 18615336 -208909242 - AluSg SINE Alu -16 294 1 1100 143 0 0 chr3 18615338 18615513 -208909065 - AluSg/x SINE Alu -7 303 129 398 19 0 19 chr3 18615513 18615565 -208909013 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2053 106 3 0 chr3 18615567 18615849 -208908729 - AluSq SINE Alu -30 283 1 1918 102 0 63 chr3 18615910 18616225 -208908353 - AluSx SINE Alu -17 295 1 201 305 0 0 chr3 18616802 18616861 -208907717 + MIR SINE MIR 204 262 0 1356 166 20 71 chr3 18617243 18617403 -208907175 - AluJb SINE Alu -19 293 153 2239 93 0 3 chr3 18617403 18617713 -208906865 - AluSg SINE Alu -1 309 1 1356 166 20 71 chr3 18617713 18617847 -208906731 - AluJb SINE Alu -159 153 14 288 0 0 0 chr3 18617956 18617988 -208906590 + (TG)n Simple_repeat Simple_repeat 1 32 0 1506 175 4 7 chr3 18617993 18618262 -208906316 - AluJo SINE Alu -44 268 1 2241 97 3 0 chr3 18618435 18618745 -208905833 - AluSp SINE Alu -2 311 1 911 176 19 0 chr3 18618820 18618979 -208905599 - AluSg/x SINE Alu -18 294 133 1549 179 29 4 chr3 18619948 18620259 -208904319 - AluJb SINE Alu 0 318 1 2432 57 0 0 chr3 18620263 18620563 -208904015 - AluY SINE Alu -11 300 1 930 196 41 5 chr3 18620707 18620927 -208903651 - MER50 LTR ERV1 -14 720 493 289 172 0 17 chr3 18620919 18620977 -208903601 - AluJo SINE Alu -159 143 87 * 2045 138 105 5 chr3 18620978 18621349 -208903229 - L1MC1 LINE L1 -228 6105 5698 932 167 139 0 chr3 18621354 18621569 -208903009 - L1MB8 LINE L1 -140 6038 5794 1003 194 38 0 chr3 18621574 18621785 -208902793 - Tigger7 DNA MER2_type -1 2486 2268 2194 106 3 0 chr3 18621786 18622097 -208902481 + AluSp SINE Alu 1 312 -1 2077 96 0 0 chr3 18622631 18622911 -208901667 + AluSx SINE Alu 21 300 -12 1604 158 0 55 chr3 18623769 18624079 -208900499 - AluJb SINE Alu -19 293 1 1728 122 4 0 chr3 18624160 18624407 -208900171 + AluSg SINE Alu 1 248 -62 1889 135 13 10 chr3 18624887 18625198 -208899380 + AluSx SINE Alu 1 312 0 818 140 0 44 chr3 18625369 18625505 -208899073 + FLAM_C SINE Alu 2 131 -2 1633 151 3 43 chr3 18625510 18625834 -208898744 + AluJo SINE Alu 2 312 0 23 0 0 0 chr3 18625852 18625875 -208898703 + AT_rich Low_complexity Low_complexity 1 23 0 262 278 176 56 chr3 18626054 18626270 -208898308 + L2 LINE L2 2837 3078 -194 191 280 133 0 chr3 18627997 18628072 -208896506 + MIR SINE MIR 55 139 -123 374 335 42 11 chr3 18628201 18628392 -208896186 + L1ME LINE L1 5599 5795 -326 2289 74 0 0 chr3 18628474 18628773 -208895805 + AluSx SINE Alu 14 312 0 1283 87 0 6 chr3 18628778 18628950 -208895628 + AluSp SINE Alu 131 301 -12 2122 92 3 23 chr3 18628955 18629093 -208895485 + AluSx SINE Alu 1 140 -172 2419 60 0 0 chr3 18629093 18629392 -208895186 + AluY SINE Alu 1 299 -12 2122 92 3 23 chr3 18629392 18629559 -208895019 + AluSx SINE Alu 140 300 -12 191 299 234 0 chr3 18629670 18629777 -208894801 - L2 LINE L2 -22 3291 3160 1249 200 43 37 chr3 18629786 18630086 -208894492 + AluJo SINE Alu 1 302 0 957 98 0 0 chr3 18630153 18630286 -208894292 + AluY SINE Alu 1 133 -178 2465 52 0 10 chr3 18630303 18630611 -208893967 + AluY SINE Alu 1 305 -6 1994 101 25 0 chr3 18630668 18630973 -208893605 + AluSp SINE Alu 1 312 0 270 184 197 0 chr3 18630974 18631050 -208893528 + MIR SINE MIR 136 226 -36 * 785 279 40 8 chr3 18631043 18631290 -208893288 + MIR SINE MIR 8 262 0 2670 10 0 0 chr3 18631493 18631792 -208892786 + AluY SINE Alu 11 309 -2 2412 156 66 0 chr3 18631851 18632307 -208892271 - L1MB5 LINE L1 0 6174 5689 2216 112 0 0 chr3 18632485 18632789 -208891789 + AluSx SINE Alu 1 304 -8 2390 68 0 10 chr3 18632800 18633108 -208891470 + AluY SINE Alu 1 305 -6 238 265 0 44 chr3 18633266 18633334 -208891244 - MIR SINE MIR -149 113 49 1430 177 0 4 chr3 18633383 18633632 -208890946 + AluJo SINE Alu 11 258 -54 2193 87 7 0 chr3 18633651 18633949 -208890629 + AluSp SINE Alu 1 300 -13 1048 265 146 10 chr3 18633960 18634371 -208890207 - L2 LINE L2 -19 3294 2828 334 281 69 50 chr3 18634575 18634613 -208889965 - L2 LINE L2 -239 3033 2997 2941 150 87 48 chr3 18634613 18635050 -208889528 - LTR26E LTR ERV1 0 622 154 1684 159 10 17 chr3 18635050 18635351 -208889227 + AluJb SINE Alu 1 299 -13 2941 150 87 48 chr3 18635351 18635512 -208889066 - LTR26E LTR ERV1 -468 154 1 334 281 69 50 chr3 18635512 18635633 -208888945 - L2 LINE L2 -275 2997 2871 1722 129 3 28 chr3 18635901 18636187 -208888391 + AluSx SINE Alu 1 279 -33 345 315 0 22 chr3 18636452 18636541 -208888037 - L1MC4 LINE L1 -1342 6700 6614 1570 178 3 21 chr3 18636623 18636909 -208887669 - AluJo SINE Alu -31 281 1 861 295 38 26 chr3 18637001 18637347 -208887231 - L1ME LINE L1 -374 5747 5398 2036 95 50 0 chr3 18637350 18637633 -208886945 - AluSx SINE Alu -15 297 1 1093 91 0 62 chr3 18637825 18638001 -208886577 + AluSg SINE Alu 14 178 -132 4628 127 19 19 chr3 18638470 18639242 -208885336 - LTR5 LTR ERVK 0 969 198 486 151 0 0 chr3 18639402 18639475 -208885103 - AluS SINE Alu -235 77 5 1449 140 0 0 chr3 18639590 18639812 -208884766 + AluSg/x SINE Alu 83 304 -6 1069 165 90 5 chr3 18639812 18640024 -208884554 + AluSx SINE Alu 1 230 -82 1811 119 4 0 chr3 18640063 18640323 -208884255 - AluSx SINE Alu -11 301 41 295 233 0 14 chr3 18640327 18640400 -208884178 + MLT1C LTR MaLR 66 137 -330 1432 181 0 24 chr3 18640427 18640714 -208883864 - AluJb SINE Alu -32 280 1 807 252 94 0 chr3 18640736 18640990 -208883588 + MLT1C LTR MaLR 190 467 0 1137 415 0 29 chr3 18641155 18641466 -208883112 + AluJb SINE Alu 1 302 0 732 215 7 7 chr3 18641467 18641602 -208882976 - MER5A DNA MER1_type -52 137 3 2325 80 0 0 chr3 18641752 18642052 -208882526 - AluY SINE Alu -11 300 1 261 315 14 0 chr3 18642121 18642194 -208882384 - L1ME LINE L1 -476 5645 5572 1608 147 4 12 chr3 18642219 18642478 -208882100 - AluSq SINE Alu -56 257 1 243 143 0 24 chr3 18642478 18642520 -208882058 + MSTA LTR MaLR 388 428 0 317 138 17 0 chr3 18642520 18642578 -208882000 - HSMAR2 DNA Mariner -1242 60 2 1047 192 22 14 chr3 18642578 18642813 -208881765 - L1M4 LINE L1 -451 5713 5470 1254 221 61 0 chr3 18643211 18643505 -208881073 - AluJb SINE Alu 0 312 1 1334 224 14 0 chr3 18643608 18643889 -208880689 + AluJo SINE Alu 3 287 -25 1615 125 4 47 chr3 18643971 18644064 -208880514 + AluSx SINE Alu 34 129 -183 1749 126 63 0 chr3 18644064 18644333 -208880245 + AluSx SINE Alu 1 286 -26 1615 125 4 47 chr3 18644333 18644350 -208880228 + AluSx SINE Alu 129 145 -167 2265 52 42 0 chr3 18644350 18644637 -208879941 + AluY SINE Alu 1 299 -12 1615 125 4 47 chr3 18644637 18644804 -208879774 + AluSx SINE Alu 145 300 -12 200 383 0 0 chr3 18644915 18644975 -208879603 - L2 LINE L2 -22 3291 3232 547 233 100 104 chr3 18645134 18645413 -208879165 + MER45C DNA AcHobo 102 379 -574 1272 221 144 89 chr3 18645443 18645798 -208878780 + MER45C DNA AcHobo 448 782 -799 1985 127 6 19 chr3 18645798 18646114 -208878464 - AluSx SINE Alu 0 312 1 1272 221 144 89 chr3 18646114 18646136 -208878442 + MER45C DNA AcHobo 782 801 -780 2248 98 0 3 chr3 18646136 18646441 -208878137 - AluSx SINE Alu -8 304 1 1272 221 144 89 chr3 18646441 18646500 -208878078 + MER45C DNA AcHobo 801 909 -44 886 142 0 7 chr3 18646500 18646641 -208877937 - FLAM_C SINE Alu -3 140 1 2269 93 0 7 chr3 18646653 18646955 -208877623 - AluSg SINE Alu -10 300 1 392 132 0 0 chr3 18646956 18647009 -208877569 + MER45C DNA AcHobo 901 953 0 360 327 9 0 chr3 18647240 18647350 -208877228 - MLT1H1 LTR MaLR -250 305 195 683 100 18 9 chr3 18647514 18647624 -208876954 + AluSp/q SINE Alu 199 309 -4 990 229 134 42 chr3 18647624 18647809 -208876769 + HAL1 LINE L1 1481 1648 -859 2042 108 7 13 chr3 18647809 18648114 -208876464 - AluSx SINE Alu -9 303 1 990 229 134 42 chr3 18648114 18648264 -208876314 + HAL1 LINE L1 1648 1847 -660 240 233 27 27 chr3 18648347 18648420 -208876158 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 18648554 18648704 -208875874 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 18648714 18649012 -208875566 + AluSx SINE Alu 8 312 0 1994 134 3 0 chr3 18649018 18649317 -208875261 + AluSx SINE Alu 1 300 -12 1745 139 0 55 chr3 18650175 18650485 -208874093 - AluJb SINE Alu -19 293 1 1287 93 6 6 chr3 18650490 18650672 -208873906 - AluSp SINE Alu -12 301 120 24 0 0 0 chr3 18650672 18650696 -208873882 + AT_rich Low_complexity Low_complexity 1 24 0 2007 79 4 0 chr3 18650976 18651241 -208873337 + AluSg SINE Alu 28 293 -17 371 267 96 7 chr3 18651325 18651460 -208873118 + MIR SINE MIR 116 262 0 2270 97 10 0 chr3 18651547 18651837 -208872741 + AluSp SINE Alu 1 293 -20 2567 50 0 10 chr3 18651902 18652200 -208872378 + AluY SINE Alu 4 298 -13 1994 143 3 3 chr3 18652558 18652852 -208871726 + AluSx SINE Alu 1 294 -18 2290 90 0 0 chr3 18652858 18653161 -208871417 + AluY SINE Alu 2 304 0 2171 87 3 51 chr3 18653166 18653478 -208871100 + AluSx SINE Alu 1 297 -15 29 28 0 0 chr3 18653572 18653608 -208870970 + AT_rich Low_complexity Low_complexity 1 36 0 263 239 35 35 chr3 18653976 18654089 -208870489 - MLT1K LTR MaLR -29 559 447 1090 113 0 0 chr3 18654146 18654305 -208870273 - AluY SINE Alu -10 301 143 309 195 146 168 chr3 18654777 18654874 -208869704 - MER5A DNA MER1_type -1 188 90 2123 137 0 0 chr3 18654874 18655167 -208869411 - AluSx SINE Alu -19 293 1 309 195 146 168 chr3 18655167 18655178 -208869400 - MER5A DNA MER1_type -99 90 80 186 43 0 0 chr3 18655178 18655201 -208869377 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2271 68 0 0 chr3 18655205 18655484 -208869094 - AluY SINE Alu -32 279 1 309 195 146 168 chr3 18655484 18655554 -208869024 - MER5A DNA MER1_type -112 77 8 251 284 114 0 chr3 18655587 18655675 -208868903 + MIR SINE MIR 73 170 -92 961 128 0 0 chr3 18655717 18655850 -208868728 + AluJb SINE Alu 1 133 -179 2329 79 0 0 chr3 18655851 18656141 -208868437 + AluY SINE Alu 1 290 -21 2046 89 58 21 chr3 18656165 18656456 -208868122 + AluY SINE Alu 1 302 -9 2205 126 0 0 chr3 18656462 18656763 -208867815 + AluSx SINE Alu 1 301 -11 181 211 0 0 chr3 18656786 18656824 -208867754 + L2 LINE L2 3223 3260 -12 545 205 9 27 chr3 18657209 18657321 -208867257 + MIR SINE MIR 20 129 -133 * 640 292 99 10 chr3 18657312 18657514 -208867064 - MIR SINE MIR -41 221 2 934 142 34 0 chr3 18657597 18657745 -208866833 - FRAM SINE Alu -1 175 23 189 195 0 0 chr3 18657774 18657815 -208866763 + T-rich Low_complexity Low_complexity 1 41 0 561 65 0 0 chr3 18657839 18657918 -208866660 - L1PA8 LINE L1 -21 6140 6034 708 229 7 0 chr3 18657925 18658065 -208866513 - FLAM_C SINE Alu -1 142 2 448 133 0 0 chr3 18658065 18658146 -208866432 + AluJ/FRAM SINE Alu 223 303 0 668 329 24 12 chr3 18658149 18658398 -208866180 + MIR SINE MIR 1 252 -10 2312 119 0 3 chr3 18658597 18658908 -208865670 + AluSx SINE Alu 1 310 -2 210 320 82 65 chr3 18659357 18659651 -208864927 - L2 LINE L2 -54 3218 2920 1190 184 124 145 chr3 18659671 18660209 -208864369 + MLT1F LTR MaLR 16 542 0 402 269 167 30 chr3 18660393 18660627 -208863951 + MLT1K LTR MaLR 73 338 -250 2286 98 10 3 chr3 18660637 18660942 -208863636 - AluSx SINE Alu -5 307 1 1059 76 0 0 chr3 18660976 18661108 -208863470 + AluY SINE Alu 1 132 -179 1234 104 0 22 chr3 18661149 18661332 -208863246 + AluY SINE Alu 116 294 -17 886 186 68 77 chr3 18661447 18661479 -208863099 + AluJb SINE Alu 86 117 -195 441 0 0 0 chr3 18661479 18661528 -208863050 + (CA)n Simple_repeat Simple_repeat 2 50 0 886 186 68 77 chr3 18661528 18661715 -208862863 + AluJb SINE Alu 117 303 -9 1396 89 28 0 chr3 18662266 18662446 -208862132 + AluSq SINE Alu 1 185 -128 473 232 174 25 chr3 18662665 18662903 -208861675 + MLT1H1 LTR MaLR 275 522 -33 268 286 0 11 chr3 18662915 18663006 -208861572 + MLT1H1-int LTR MaLR 1 90 -1645 2037 154 12 0 chr3 18663051 18663384 -208861194 - LTR26B LTR ERV1 -1 530 191 2470 70 0 3 chr3 18663384 18663683 -208860895 - AluSx SINE Alu -14 298 1 1312 96 0 0 chr3 18663693 18663859 -208860719 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 18663864 18664009 -208860569 - LTR26B LTR ERV1 -327 204 4 262 301 89 56 chr3 18664010 18664174 -208860404 + MLT1H1-int LTR MaLR 309 487 -884 2433 86 3 0 chr3 18664174 18664477 -208860101 - AluSp SINE Alu -9 304 1 262 301 89 56 chr3 18664477 18664581 -208859997 + MLT1H1-int LTR MaLR 487 586 -785 807 214 0 36 chr3 18664682 18664850 -208859728 + FRAM SINE Alu 2 163 -13 2207 122 0 3 chr3 18665197 18665491 -208859087 - AluSg SINE Alu -15 295 3 285 254 75 40 chr3 18665854 18666027 -208858551 + MLT1H1-int LTR MaLR 1556 1734 -1 435 228 91 158 chr3 18666028 18666544 -208858034 + MLT1H1 LTR MaLR 1 550 -5 180 0 0 0 chr3 18666544 18666564 -208858014 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1897 156 11 0 chr3 18666571 18666716 -208857862 - AluSx SINE Alu -27 285 143 2410 92 0 0 chr3 18666716 18667022 -208857556 - AluY SINE Alu -5 306 1 1897 156 11 0 chr3 18667022 18667158 -208857420 - AluSx SINE Alu -169 143 1 435 228 91 158 chr3 18667158 18667223 -208857355 + MLT1H1 LTR MaLR 485 553 -2 508 266 14 0 chr3 18667225 18667364 -208857214 - LTR33 LTR ERVL -379 142 2 1019 137 5 58 chr3 18668164 18668183 -208856395 + AluSg/x SINE Alu 119 137 -173 2250 110 7 3 chr3 18668183 18668492 -208856086 + AluSx SINE Alu 1 310 -2 1019 137 5 58 chr3 18668492 18668662 -208855916 + AluSg/x SINE Alu 137 298 -12 918 130 0 8 chr3 18668756 18668887 -208855691 + FRAM SINE Alu 28 157 -19 702 115 34 115 chr3 18669159 18669307 -208855271 + AluJo SINE Alu 1 136 -176 2293 111 0 3 chr3 18669909 18670216 -208854362 - AluSc SINE Alu -3 306 1 2434 90 0 0 chr3 18671266 18671577 -208853001 - AluY SINE Alu 0 311 1 1044 119 0 0 chr3 18671579 18671713 -208852865 - AluSq/x SINE Alu -178 134 1 291 200 15 15 chr3 18671713 18671778 -208852800 + MLT1H1 LTR MaLR 489 553 -2 494 273 14 0 chr3 18671780 18671919 -208852659 - LTR33 LTR ERVL -379 142 2 774 313 197 8 chr3 18671924 18672406 -208852172 - L2 LINE L2 -808 2506 1934 822 103 86 0 chr3 18672406 18672523 -208852055 + AluJb SINE Alu 1 127 -185 213 39 0 0 chr3 18672526 18672552 -208852026 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 927 273 8 4 chr3 18672666 18672961 -208851617 + L1ME LINE L1 5319 5613 -557 789 276 73 11 chr3 18672974 18673249 -208851329 - LTR16A LTR ERVL -12 438 147 426 246 122 2 chr3 18673453 18673626 -208850952 + MIR SINE MIR 2 204 -58 1942 151 3 3 chr3 18673645 18673936 -208850642 - AluJb SINE Alu -21 291 1 610 194 24 77 chr3 18674065 18674116 -208850462 - MIR SINE MIR -10 252 200 2538 34 45 0 chr3 18674116 18674407 -208850171 - AluY SINE Alu -7 304 1 610 194 24 77 chr3 18674407 18674525 -208850053 - MIR SINE MIR -62 200 92 605 193 42 0 chr3 18674596 18674715 -208849863 - FLAM_A SINE Alu -9 124 1 363 279 50 75 chr3 18674718 18674961 -208849617 - L1MC/D LINE L1 -743 5403 5249 2015 122 27 0 chr3 18674961 18675256 -208849322 - AluSq SINE Alu -10 303 1 363 279 50 75 chr3 18675256 18675405 -208849173 - L1MC/D LINE L1 -897 5249 5098 2032 96 60 7 chr3 18675477 18675758 -208848820 - AluSg SINE Alu -14 296 1 2576 65 0 0 chr3 18675763 18676072 -208848506 - AluY SINE Alu -2 309 1 961 128 0 0 chr3 18676073 18676206 -208848372 - AluJb SINE Alu -179 133 1 251 284 114 0 chr3 18676248 18676336 -208848242 - MIR SINE MIR -92 170 73 333 199 149 149 chr3 18676369 18676439 -208848139 + MER5A DNA MER1_type 8 77 -112 2270 74 0 0 chr3 18676439 18676746 -208847832 + AluY SINE Alu 1 307 0 333 199 149 149 chr3 18676746 18676757 -208847821 + MER5A DNA MER1_type 77 87 -102 2123 137 0 0 chr3 18676757 18677050 -208847528 + AluSx SINE Alu 1 293 -19 333 199 149 149 chr3 18677050 18677147 -208847431 + MER5A DNA MER1_type 86 188 -1 621 207 9 0 chr3 18677513 18677624 -208846954 + MER81 DNA DNA 3 114 0 540 242 27 34 chr3 18677675 18677824 -208846754 + MER5B DNA MER1_type 1 148 -30 297 0 0 0 chr3 18677825 18677858 -208846720 + (TG)n Simple_repeat Simple_repeat 2 34 0 2207 100 0 0 chr3 18677859 18678138 -208846440 - AluSx SINE Alu -33 279 1 28 0 0 0 chr3 18678145 18678173 -208846405 + AT_rich Low_complexity Low_complexity 1 28 0 338 232 14 0 chr3 18678192 18678261 -208846317 + L2 LINE L2 3232 3301 -12 339 266 19 19 chr3 18678261 18678415 -208846163 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 18679077 18679155 -208845423 + MIR3 SINE MIR 112 187 -21 522 330 176 9 chr3 18679520 18679975 -208844603 - L2 LINE L2 -850 2464 1934 822 103 86 0 chr3 18679975 18680092 -208844486 + AluJb SINE Alu 1 127 -185 213 39 0 0 chr3 18680095 18680121 -208844457 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 941 263 22 22 chr3 18680235 18680509 -208844069 + L1ME LINE L1 5319 5585 -577 788 276 73 11 chr3 18680543 18680818 -208843760 - LTR16A LTR ERVL -12 438 147 1683 181 36 26 chr3 18680990 18681400 -208843178 - AluJo SINE Alu 0 413 1 761 320 71 43 chr3 18681505 18682067 -208842511 - ERVL LTR ERVL -439 5325 4748 194 0 39 0 chr3 18682263 18682289 -208842289 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1746 154 28 21 chr3 18682291 18682577 -208842001 - AluSx SINE Alu -24 288 1 447 301 53 73 chr3 18683479 18683821 -208840757 - ERVL LTR ERVL -1140 4624 4290 24 0 0 0 chr3 18683821 18683845 -208840733 + AT_rich Low_complexity Low_complexity 1 24 0 1140 341 61 31 chr3 18683869 18685056 -208839522 - ERVL LTR ERVL -1339 4146 3007 1377 201 29 4 chr3 18685061 18685339 -208839239 + AluSq SINE Alu 1 285 -28 669 87 0 78 chr3 18685400 18685503 -208839075 - AluSg SINE Alu -214 96 2 2276 77 0 46 chr3 18685515 18685838 -208838740 - AluY SINE Alu -3 308 1 1299 102 0 0 chr3 18685848 18686014 -208838564 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 18686019 18686164 -208838414 - LTR26B LTR ERV1 -327 204 4 251 298 78 59 chr3 18686165 18686329 -208838249 + MLT1-int LTR MaLR 309 481 -890 2324 102 3 3 chr3 18686329 18686633 -208837945 - AluSp SINE Alu -9 304 1 251 298 78 59 chr3 18686633 18686723 -208837855 + MLT1-int LTR MaLR 481 568 -803 3116 62 14 39 chr3 18688049 18688488 -208836090 + SVA Other Other 5 432 -954 1272 78 0 0 chr3 18688488 18688641 -208835937 - AluSg SINE Alu -157 153 1 180 111 0 0 chr3 18689103 18689130 -208835448 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 752 172 39 0 chr3 18689160 18689288 -208835290 + FRAM SINE Alu 23 155 -21 632 292 99 10 chr3 18689392 18689594 -208834984 + MIR SINE MIR 2 221 -41 526 214 9 27 chr3 18689585 18689697 -208834881 - MIR SINE MIR -133 129 20 * 181 211 0 0 chr3 18690082 18690120 -208834458 - L2 LINE L2 -12 3260 3223 2205 126 0 3 chr3 18690143 18690445 -208834133 - AluSx SINE Alu -11 301 1 433 96 14 0 chr3 18690445 18690518 -208834060 + L1MB7 LINE L1 6111 6184 0 457 265 45 8 chr3 18691250 18691382 -208833196 - MIR3 SINE MIR -12 196 60 252 143 0 0 chr3 18691481 18691523 -208833055 - MIR SINE MIR -174 88 47 1021 155 14 0 chr3 18692329 18692477 -208832101 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 18692483 18692581 -208831997 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 18692589 18692749 -208831829 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 18692749 18693065 -208831513 + AluSg SINE Alu 1 310 0 2119 136 6 22 chr3 18693408 18693756 -208830822 - AluJb SINE Alu 0 343 1 1101 76 0 0 chr3 18693781 18693912 -208830666 - AluSg SINE Alu -179 131 1 29 0 0 0 chr3 18693919 18693948 -208830630 + AT_rich Low_complexity Low_complexity 1 29 0 2145 120 0 14 chr3 18693954 18694246 -208830332 - AluSx SINE Alu -24 288 1 463 178 9 9 chr3 18694889 18694996 -208829582 + CT-rich Low_complexity Low_complexity 4 110 0 272 275 90 39 chr3 18695352 18695491 -208829087 - L1MC5 LINE L1 -105 7856 7699 2142 133 3 0 chr3 18695491 18695784 -208828794 - AluSx SINE Alu -18 294 1 272 275 90 39 chr3 18695784 18695877 -208828701 - L1MC5 LINE L1 -262 7699 7612 271 189 44 22 chr3 18696125 18696215 -208828363 + MER113 DNA MER1_type? 8 99 -422 2450 57 13 3 chr3 18696217 18696517 -208828061 - AluY SINE Alu -8 303 1 813 191 28 51 chr3 18696521 18696699 -208827879 - MER5A DNA MER1_type -9 180 7 393 284 89 35 chr3 18696732 18696901 -208827677 - L3 LINE CR1 -99 1478 1301 978 161 63 74 chr3 18697060 18697128 -208827450 - MER33 DNA MER1_type -2307 278 211 1715 168 13 30 chr3 18697128 18697431 -208827147 + AluJo SINE Alu 1 298 -14 978 161 63 74 chr3 18697431 18697658 -208826920 - MER33 DNA MER1_type -2374 211 1 1493 224 11 35 chr3 18697878 18698143 -208826435 - L1M4 LINE L1 -743 5403 5133 2293 97 0 0 chr3 18698143 18698461 -208826117 + AluSc SINE Alu 1 309 0 1493 224 11 35 chr3 18698461 18698604 -208825974 - L1M4 LINE L1 -1013 5133 5004 1803 162 53 3 chr3 18698604 18698888 -208825690 - AluSx SINE Alu -14 298 1 1493 224 11 35 chr3 18698888 18698929 -208825649 - L1M4 LINE L1 -1142 5004 4964 2263 93 3 40 chr3 18698977 18699301 -208825277 - AluSx SINE Alu 0 312 1 2289 90 0 0 chr3 18699306 18699609 -208824969 - AluY SINE Alu 0 304 2 2020 139 3 3 chr3 18699615 18699909 -208824669 - AluSx SINE Alu -18 294 1 2490 60 0 10 chr3 18700267 18700565 -208824013 - AluY SINE Alu -13 298 4 2270 97 10 0 chr3 18700630 18700920 -208823658 - AluSp SINE Alu -20 293 1 1426 40 12 0 chr3 18701161 18701334 -208823244 + AluY SINE Alu 128 302 -9 263 239 35 35 chr3 18701391 18701504 -208823074 + MLT1K LTR MaLR 447 559 -29 29 28 0 0 chr3 18701872 18701908 -208822670 + AT_rich Low_complexity Low_complexity 1 36 0 2430 64 3 3 chr3 18702002 18702297 -208822281 - AluY SINE Alu -16 295 1 516 293 108 14 chr3 18702297 18702589 -208821989 + L2 LINE L2 2923 3243 -70 996 168 15 30 chr3 18702612 18702815 -208821763 - MER3 DNA MER1_type 0 209 10 2362 68 20 7 chr3 18702881 18703174 -208821404 - AluY SINE Alu -14 297 1 1827 163 0 14 chr3 18703176 18703471 -208821107 - AluJb SINE Alu -21 291 1 931 207 5 11 chr3 18703551 18703739 -208820839 - MER20 DNA MER1_type 0 219 33 934 239 31 28 chr3 18703925 18704214 -208820364 + AluSx SINE Alu 2 291 -11 261 197 0 0 chr3 18704219 18704295 -208820283 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 18704430 18704722 -208819856 + AluSx SINE Alu 21 312 0 22 0 0 0 chr3 18705041 18705063 -208819515 + GC_rich Low_complexity Low_complexity 1 22 0 234 326 21 11 chr3 18705389 18705484 -208819094 - Charlie8 DNA MER1_type -2301 116 21 265 234 0 0 chr3 18706475 18706539 -208818039 + L1ME4a LINE L1 5683 5746 -2062 244 281 74 25 chr3 18706811 18706932 -208817646 + L1ME4a LINE L1 5979 6105 -16 2199 112 3 16 chr3 18707008 18707320 -208817258 + AluSx SINE Alu 1 308 -4 1671 153 66 20 chr3 18707325 18707813 -208816765 + L1MB3 LINE L1 5577 6143 -40 2216 120 0 13 chr3 18707813 18708122 -208816456 + AluSx SINE Alu 1 305 -7 502 204 0 0 chr3 18708136 18708229 -208816349 + FLAM_A SINE Alu 16 108 -34 2136 112 16 7 chr3 18708229 18708532 -208816046 - AluSq SINE Alu -7 306 1 671 82 48 0 chr3 18708597 18708744 -208815834 + GA-rich Low_complexity Low_complexity 1 154 0 2497 70 0 0 chr3 18711543 18711842 -208812736 + AluY SINE Alu 1 299 -12 184 154 39 0 chr3 18712152 18712204 -208812374 + CT-rich Low_complexity Low_complexity 2 55 0 791 216 39 39 chr3 18712572 18712780 -208811798 + MIR SINE MIR 51 258 -4 2332 96 0 7 chr3 18712924 18713226 -208811352 - AluSx SINE Alu -4 308 9 182 297 55 41 chr3 18713318 18713463 -208811115 + L2 LINE L2 2824 2970 -302 852 224 175 32 chr3 18713493 18713520 -208811058 - L2 LINE L2 0 3313 3291 1963 147 17 0 chr3 18713520 18713812 -208810766 + AluJo SINE Alu 1 297 -15 852 224 175 32 chr3 18713812 18714222 -208810356 - L2 LINE L2 -22 3291 2795 911 149 34 0 chr3 18714344 18714492 -208810086 - FRAM SINE Alu -1 175 23 198 191 0 0 chr3 18714521 18714563 -208810015 + T-rich Low_complexity Low_complexity 1 42 0 546 80 0 0 chr3 18714583 18714662 -208809916 - L1PA8 LINE L1 -21 6140 6034 715 227 7 0 chr3 18714669 18714810 -208809768 - FLAM_C SINE Alu 0 143 2 448 133 0 0 chr3 18714810 18714891 -208809687 + AluJ/FRAM SINE Alu 223 303 0 684 325 24 12 chr3 18714894 18715143 -208809435 + MIR SINE MIR 1 252 -10 2044 121 10 13 chr3 18715342 18715640 -208808938 + AluSx SINE Alu 1 297 -15 579 234 62 45 chr3 18716435 18716621 -208807957 + MIR SINE MIR 4 195 -62 270 0 0 0 chr3 18716621 18716651 -208807927 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2138 112 3 7 chr3 18716657 18716952 -208807626 - AluY SINE Alu -17 294 1 2057 147 55 24 chr3 18716952 18717373 -208807205 + L1MC3 LINE L1 5397 5830 -1955 2742 133 171 20 chr3 18717417 18717966 -208806612 - MER67B LTR ERV1 -22 639 8 231 36 0 0 chr3 18717967 18717995 -208806583 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 2148 114 10 0 chr3 18718014 18718303 -208806275 - AluSq SINE Alu -21 292 1 2275 82 0 3 chr3 18718340 18718632 -208805946 - AluY SINE Alu -20 291 1 2122 190 11 25 chr3 18718633 18719076 -208805502 + L1MC3 LINE L1 5845 6281 -1504 834 224 140 89 chr3 18719078 18719573 -208805005 - MER66A LTR ERV1 -10 601 104 2929 180 47 0 chr3 18719573 18720129 -208804449 + L1MC3 LINE L1 6276 6857 -928 270 0 0 0 chr3 18720129 18720159 -208804419 + (CA)n Simple_repeat Simple_repeat 2 31 0 445 265 121 28 chr3 18720320 18720535 -208804043 + MLT1K LTR MaLR 340 574 -14 649 254 117 76 chr3 18720601 18720995 -208803583 - MLT1J LTR MaLR -3 508 99 299 306 48 127 chr3 18721033 18721467 -208803111 - L2 LINE L2 -925 2389 1990 2209 99 0 62 chr3 18721473 18721795 -208802783 + AluSx SINE Alu 2 303 -9 241 224 30 60 chr3 18721961 18722028 -208802550 - MIR SINE MIR -98 164 100 463 291 0 4 chr3 18722220 18722356 -208802222 + MIR SINE MIR 19 151 -65 2300 107 10 3 chr3 18722450 18722758 -208801820 + AluSx SINE Alu 1 310 -2 244 270 203 27 chr3 18722904 18723052 -208801526 - MIR SINE MIR -7 255 82 231 209 0 0 chr3 18723432 18723475 -208801103 - MIR SINE MIR -2 260 218 2315 80 10 3 chr3 18723481 18723783 -208800795 - AluY SINE Alu -7 304 1 2049 143 0 10 chr3 18723910 18724218 -208800360 - AluJb SINE Alu -7 305 1 1974 145 3 3 chr3 18724378 18724668 -208799910 + AluJb SINE Alu 1 290 -22 390 286 75 41 chr3 18724676 18724760 -208799818 + HAL1b LINE L1 1191 1284 -64 1979 147 0 27 chr3 18724760 18725059 -208799519 + AluSq SINE Alu 2 292 -21 390 286 75 41 chr3 18725059 18725121 -208799457 + HAL1b LINE L1 1284 1342 -6 208 331 57 40 chr3 18725864 18725988 -208798590 - MIR SINE MIR -70 192 67 559 241 61 50 chr3 18726401 18726630 -208797948 + L1ME4a LINE L1 5856 6090 -31 2167 141 3 0 chr3 18726630 18726942 -208797636 - AluSq SINE Alu 0 313 1 559 241 61 50 chr3 18726942 18726974 -208797604 + L1ME4a LINE L1 6090 6120 -1 191 262 0 0 chr3 18727046 18727088 -208797490 + MIR SINE MIR 212 253 -9 626 283 16 21 chr3 18727176 18727367 -208797211 + MIR SINE MIR 71 260 -2 2330 87 3 0 chr3 18727877 18728175 -208796403 - AluY SINE Alu -12 299 1 1009 112 0 8 chr3 18728178 18728312 -208796266 - AluJb SINE Alu -179 133 1 294 95 0 0 chr3 18728313 18728355 -208796223 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 231 292 0 0 chr3 18729357 18729422 -208795156 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 18729438 18729463 -208795115 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1841 184 18 21 chr3 18729465 18729850 -208794728 + MER65C LTR ERV1 78 461 0 261 261 0 46 chr3 18729882 18729947 -208794631 - MER58 DNA MER1_type -166 58 1 242 229 0 0 chr3 18730350 18730398 -208794180 + L1M4 LINE L1 4284 4331 -1815 2385 77 0 7 chr3 18730404 18730702 -208793876 - AluY SINE Alu -15 296 1 250 315 14 0 chr3 18730771 18730844 -208793734 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 18730856 18731127 -208793451 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 18731194 18731270 -208793308 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 18731268 18731304 -208793274 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 18731306 18731388 -208793190 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 18731389 18731427 -208793151 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 18731427 18731727 -208792851 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 18731727 18731768 -208792810 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 18732018 18732328 -208792250 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 18732575 18732650 -208791928 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 18732650 18732777 -208791801 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 18732777 18733135 -208791443 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 18733135 18733447 -208791131 + HERV16 LTR ERVL 2445 2773 -2223 2497 81 0 7 chr3 18733486 18733796 -208790782 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 18733800 18734088 -208790490 + L1PA16 LINE L1 5869 6161 -5 2189 78 12 72 chr3 18734263 18734582 -208789996 + AluSq SINE Alu 2 301 -12 1061 270 146 10 chr3 18734593 18735004 -208789574 - L2 LINE L2 -19 3294 2828 1439 159 40 0 chr3 18735246 18735497 -208789081 - LTR26B LTR ERV1 0 531 271 2728 102 151 118 chr3 18735734 18736632 -208787946 + pTR5 LTR ERV1 1206 2438 0 199 262 49 16 chr3 18737429 18737490 -208787088 + MIR SINE MIR 61 123 -85 389 266 8 40 chr3 18737733 18737857 -208786721 + MIR SINE MIR 24 143 -65 283 299 11 0 chr3 18737921 18738008 -208786570 + L1MC/D LINE L1 5186 5273 -873 2565 57 0 0 chr3 18738015 18738311 -208786267 - AluY SINE Alu -15 296 1 405 263 18 0 chr3 18738311 18738425 -208786153 + L1MC/D LINE L1 5685 5800 -559 679 147 0 0 chr3 18738753 18738848 -208785730 - AluJ/FLAM SINE Alu -216 96 2 23 33 0 0 chr3 18738851 18738881 -208785697 + AT_rich Low_complexity Low_complexity 1 30 0 249 325 157 0 chr3 18739088 18739240 -208785338 + MIR3 SINE MIR 8 181 -63 359 283 92 17 chr3 18740362 18740535 -208784043 - Charlie8 DNA MER1_type -2140 277 92 1098 83 0 0 chr3 18740542 18740675 -208783903 + AluSc SINE Alu 1 133 -176 2040 138 3 7 chr3 18740675 18740971 -208783607 + AluSq SINE Alu 1 295 -18 944 290 118 7 chr3 18741146 18741560 -208783018 - LTR16B LTR ERVL -4 460 1 233 266 16 126 chr3 18741587 18741835 -208782743 + L2 LINE L2 2690 2899 -373 2425 60 10 10 chr3 18741835 18742137 -208782441 - AluSq SINE Alu -11 302 1 233 266 16 126 chr3 18742137 18742213 -208782365 + L2 LINE L2 2899 2982 -290 1154 163 72 0 chr3 18742461 18742670 -208781908 - L1M3 LINE L1 -397 5786 5563 22 35 0 0 chr3 18743066 18743095 -208781483 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 18743100 18743396 -208781182 + AluSx SINE Alu 3 296 -16 2193 105 0 3 chr3 18743398 18743694 -208780884 + AluY SINE Alu 1 295 -16 2506 145 71 67 chr3 18743694 18744015 -208780563 - L1MB3 LINE L1 -11 6172 5847 1978 176 0 0 chr3 18744015 18744327 -208780251 - AluJb SINE Alu 0 312 1 2506 145 71 67 chr3 18744327 18744613 -208779965 - L1MB3 LINE L1 -336 5847 5563 23 0 0 0 chr3 18744619 18744642 -208779936 + AT_rich Low_complexity Low_complexity 1 23 0 586 208 156 87 chr3 18744733 18744821 -208779757 + LTR50 LTR ERVL 471 551 -244 2370 57 0 11 chr3 18744821 18745150 -208779428 - AluY SINE Alu 0 327 2 198 0 0 0 chr3 18745150 18745172 -208779406 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2265 96 3 0 chr3 18745173 18745455 -208779123 - AluSx SINE Alu -29 283 1 2413 91 0 0 chr3 18745461 18745757 -208778821 - AluY SINE Alu -15 296 1 586 208 156 87 chr3 18745757 18745946 -208778632 + LTR50 LTR ERVL 555 779 -16 1033 188 0 0 chr3 18746048 18746218 -208778360 - AluJb SINE Alu -3 309 140 496 192 0 0 chr3 18746218 18746291 -208778287 - AluS SINE Alu -239 74 2 647 220 43 105 chr3 18746364 18746553 -208778025 - MIR SINE MIR -2 260 83 2138 116 3 0 chr3 18746553 18746863 -208777715 + AluSq SINE Alu 11 313 0 647 220 43 105 chr3 18746863 18746902 -208777676 - MIR SINE MIR -179 83 43 1050 119 94 5 chr3 18747124 18747325 -208777253 + L1MA8 LINE L1 6053 6271 -20 1549 201 3 28 chr3 18747325 18747644 -208776934 - AluJo SINE Alu -1 311 1 465 207 47 35 chr3 18748465 18748632 -208775946 + MIR SINE MIR 9 143 -65 611 274 86 5 chr3 18748732 18748918 -208775660 - MIR SINE MIR -55 207 7 761 185 23 0 chr3 18749326 18749456 -208775122 - FLAM_A SINE Alu 0 133 1 2424 93 0 3 chr3 18749581 18749881 -208774697 - AluSx SINE Alu -13 299 1 1848 169 0 29 chr3 18750303 18750611 -208773967 - AluJo SINE Alu -13 299 1 23 33 0 0 chr3 18750613 18750643 -208773935 + AT_rich Low_complexity Low_complexity 1 30 0 191 261 11 45 chr3 18750819 18750907 -208773671 - L2 LINE L2 -1110 2204 2120 * 253 323 157 0 chr3 18750850 18751002 -208773576 + MIR SINE MIR 8 181 -63 359 283 92 17 chr3 18752124 18752297 -208772281 - Charlie8 DNA MER1_type -2140 277 92 2261 109 0 0 chr3 18752304 18752597 -208771981 + AluSc SINE Alu 1 293 -16 269 250 24 0 chr3 18752611 18752695 -208771883 - HsTC2 DNA Tc2 -5 1893 1808 585 227 147 90 chr3 18753269 18753438 -208771140 - MER102a DNA MER1_type -1100 317 159 2145 128 20 0 chr3 18753438 18753744 -208770834 - AluSx SINE Alu 0 312 1 585 227 147 90 chr3 18753744 18753756 -208770822 - MER102a DNA MER1_type -1258 159 149 2321 116 0 0 chr3 18753756 18754059 -208770519 - AluSx SINE Alu -9 303 1 585 227 147 90 chr3 18754059 18754176 -208770402 - MER102a DNA MER1_type -1268 149 1 876 203 68 0 chr3 18754457 18754634 -208769944 + MER5A DNA MER1_type 1 189 0 2440 67 0 0 chr3 18754767 18755072 -208769506 + AluY SINE Alu 1 305 0 506 227 36 0 chr3 18755175 18755285 -208769293 - MIR SINE MIR -89 173 60 1593 117 113 0 chr3 18755422 18755696 -208768882 - Tigger3(Golem) DNA MER2_type -3 3026 2722 2545 67 0 0 chr3 18755710 18756010 -208768568 - AluY SINE Alu -11 300 1 902 145 0 0 chr3 18756018 18756142 -208768436 - FLAM_C SINE Alu -14 129 6 357 113 38 38 chr3 18756148 18756228 -208768350 - HsTC2 DNA Tc2 -1816 82 3 1005 153 0 25 chr3 18756242 18756405 -208768173 - AluJo/FRAM SINE Alu -8 304 146 242 178 0 0 chr3 18756405 18756450 -208768128 + Alu SINE Alu 250 294 -8 881 222 248 4 chr3 18756453 18756719 -208767859 + L1ME LINE L1 5294 5624 -542 2178 121 0 3 chr3 18756719 18757016 -208767562 + AluSq SINE Alu 1 296 -17 1245 218 8 11 chr3 18757406 18757667 -208766911 + AluJo SINE Alu 1 260 -52 2203 144 28 3 chr3 18758183 18758538 -208766040 + THE1B LTR MaLR 1 364 0 544 96 24 0 chr3 18758538 18758621 -208765957 + THE1B-int LTR MaLR 1 85 -1495 1711 161 99 28 chr3 18758621 18759191 -208765387 - MER51B LTR ERV1 -1 376 1 459 61 15 0 chr3 18759191 18759257 -208765321 + THE1B-int LTR MaLR 87 153 -1427 9087 98 42 44 chr3 18759257 18760745 -208763833 + THE1B-int LTR MaLR 97 1580 0 2320 140 22 0 chr3 18760745 18761101 -208763477 + THE1B LTR MaLR 1 364 0 596 280 93 6 chr3 18761164 18761401 -208763177 + MIR SINE MIR 4 262 0 246 267 0 0 chr3 18761651 18761726 -208762852 - L1ME4a LINE L1 -1 6120 6046 2327 107 3 0 chr3 18761905 18762205 -208762373 + AluSp SINE Alu 1 301 -12 279 0 0 0 chr3 18762589 18762620 -208761958 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6694 127 31 72 chr3 18762629 18763755 -208760823 - SVA Other Other 0 1386 307 22 35 0 0 chr3 18763756 18763785 -208760793 + AT_rich Low_complexity Low_complexity 1 29 0 996 168 15 30 chr3 18763838 18764041 -208760537 + MER3 DNA MER1_type 10 209 0 534 281 97 51 chr3 18764064 18764356 -208760222 - L2 LINE L2 -70 3243 2933 2547 53 3 3 chr3 18764356 18764658 -208759920 + AluY SINE Alu 1 302 -9 534 281 97 51 chr3 18764658 18764696 -208759882 - L2 LINE L2 -380 2933 2898 2623 43 3 0 chr3 18764708 18765008 -208759570 + AluY SINE Alu 1 301 -10 290 181 69 55 chr3 18765056 18765147 -208759431 + MIR3 SINE MIR 95 196 -35 2163 120 10 7 chr3 18765262 18765561 -208759017 - AluSx SINE Alu -12 300 1 671 82 48 0 chr3 18765626 18765773 -208758805 + GA-rich Low_complexity Low_complexity 1 154 0 328 275 101 40 chr3 18766308 18766457 -208758121 - L1ME3A LINE L1 -8 6162 6005 562 231 266 8 chr3 18766544 18766720 -208757858 + L2 LINE L2 2886 3015 -298 2150 103 59 0 chr3 18766720 18767010 -208757568 - AluSq SINE Alu -6 307 1 562 231 266 8 chr3 18767010 18767089 -208757489 + L2 LINE L2 3015 3207 -106 931 207 5 11 chr3 18767090 18767278 -208757300 - MER20 DNA MER1_type 0 219 33 2158 113 3 3 chr3 18767462 18767753 -208756825 + AluSx SINE Alu 1 291 -21 261 197 0 0 chr3 18767758 18767834 -208756744 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 18767969 18768261 -208756317 + AluSx SINE Alu 21 312 0 330 282 18 59 chr3 18768293 18768463 -208756115 + L2 LINE L2 1761 1923 -1391 683 254 18 0 chr3 18768471 18768640 -208755938 + L1MEc LINE L1 50 221 -6175 549 189 92 67 chr3 18768660 18768784 -208755794 + MLT1A2 LTR MaLR 1 131 -259 2518 72 0 3 chr3 18768784 18769088 -208755490 + AluY SINE Alu 1 303 -8 549 189 92 67 chr3 18769088 18769127 -208755451 + MLT1A2 LTR MaLR 131 168 -222 776 252 14 32 chr3 18769127 18769345 -208755233 + AluJo SINE Alu 81 294 -18 835 171 0 25 chr3 18769392 18769550 -208755028 + MLT1A2 LTR MaLR 189 342 -32 1169 155 0 27 chr3 18769550 18769737 -208754841 - AluJo SINE Alu -9 303 122 603 289 35 20 chr3 18769760 18769961 -208754617 + L1MEc LINE L1 254 457 -5939 1204 137 0 6 chr3 18770027 18770202 -208754376 - AluSg/x SINE Alu -5 305 132 2281 104 14 0 chr3 18770202 18770372 -208754206 - AluSq SINE Alu -12 301 124 183 80 0 0 chr3 18770372 18770397 -208754181 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2281 104 14 0 chr3 18770397 18770523 -208754055 - AluSq SINE Alu -189 124 1 326 304 48 126 chr3 18770525 18770962 -208753616 + L2 LINE L2 1987 2389 -925 657 249 119 79 chr3 18771000 18771394 -208753184 + MLT1J LTR MaLR 99 508 -3 491 321 88 10 chr3 18771460 18771756 -208752822 - MLT1K LTR MaLR -14 574 256 373 246 79 0 chr3 18771757 18771871 -208752707 - MLT1H LTR MaLR -1 548 426 316 342 11 31 chr3 18771871 18772141 -208752437 + GA-rich Low_complexity Low_complexity 1 264 0 396 247 47 13 chr3 18772142 18772292 -208752286 - MLT1H LTR MaLR -316 233 79 2569 170 40 4 chr3 18772615 18773120 -208751458 - L1MB4 LINE L1 -6 6174 5652 523 42 28 0 chr3 18773122 18773194 -208751384 - AluY SINE Alu -6 303 230 358 20 0 40 chr3 18773197 18773247 -208751331 + AluSg/x SINE Alu 86 133 -167 2205 115 3 7 chr3 18773247 18773543 -208751035 + AluSq SINE Alu 1 295 -18 926 292 118 7 chr3 18773718 18774132 -208750446 - LTR16B LTR ERVL -4 460 1 195 309 29 15 chr3 18774159 18774227 -208750351 + L2 LINE L2 2690 2758 -556 539 195 23 0 chr3 18774405 18774492 -208750086 - AluSp/q SINE Alu -9 304 216 1111 172 72 0 chr3 18774696 18774905 -208749673 - L1M3 LINE L1 -397 5786 5563 22 35 0 0 chr3 18775301 18775330 -208749248 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 18775335 18775631 -208748947 + AluSx SINE Alu 3 296 -16 2153 92 50 0 chr3 18775633 18775914 -208748664 + AluSg SINE Alu 1 295 -15 849 292 48 15 chr3 18775917 18776249 -208748329 + L1ME LINE L1 5398 5740 -381 1743 182 3 20 chr3 18776351 18776648 -208747930 + AluJo SINE Alu 1 292 -20 394 296 0 0 chr3 18776648 18776736 -208747842 - L1MC4 LINE L1 -1340 6702 6615 * 396 324 9 0 chr3 18776721 18776832 -208747746 + L1MC4 LINE L1 6614 6725 -1317 1402 221 61 0 chr3 18777123 18777417 -208747161 - AluJb SINE Alu 0 312 1 1458 228 14 0 chr3 18777520 18777801 -208746777 + AluJo SINE Alu 3 287 -25 640 130 11 0 chr3 18777883 18777975 -208746603 + AluJb SINE Alu 34 126 -186 1968 172 0 3 chr3 18777976 18778284 -208746294 + AluSg SINE Alu 1 307 -3 706 214 8 8 chr3 18778286 18778417 -208746161 - MER5A DNA MER1_type -56 133 3 2469 80 0 0 chr3 18778567 18778867 -208745711 - AluY SINE Alu -11 300 1 250 315 14 0 chr3 18778936 18779009 -208745569 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 18779021 18779292 -208745286 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 18779359 18779435 -208745143 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 18779433 18779469 -208745109 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 18779471 18779553 -208745025 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 18779554 18779592 -208744986 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 18779592 18779892 -208744686 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 18779892 18779933 -208744645 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 18780183 18780493 -208744085 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 18780740 18780815 -208743763 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 18780815 18780942 -208743636 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 18780942 18781300 -208743278 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 18781300 18781612 -208742966 + HERV16 LTR ERVL 2445 2773 -2223 2519 74 0 7 chr3 18781651 18781961 -208742617 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 18781965 18782253 -208742325 + L1PA16 LINE L1 5869 6161 -5 2237 83 9 74 chr3 18782428 18782754 -208741824 + AluSq SINE Alu 2 306 -7 23 33 0 0 chr3 18782783 18782813 -208741765 + AT_rich Low_complexity Low_complexity 1 30 0 1943 163 0 0 chr3 18782944 18783244 -208741334 + AluJb SINE Alu 9 308 -4 294 95 0 0 chr3 18784130 18784172 -208740406 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 1009 112 0 8 chr3 18784173 18784307 -208740271 + AluJb SINE Alu 1 133 -179 2330 87 3 0 chr3 18784310 18784608 -208739970 + AluY SINE Alu 1 299 -12 752 269 68 17 chr3 18785118 18785352 -208739226 - MIR SINE MIR -2 260 15 191 262 0 0 chr3 18785400 18785442 -208739136 - MIR SINE MIR -9 253 212 559 241 61 50 chr3 18785514 18785546 -208739032 - L1ME4a LINE L1 -1 6120 6090 2167 141 3 0 chr3 18785546 18785858 -208738720 + AluSq SINE Alu 1 313 0 559 241 61 50 chr3 18785858 18786087 -208738491 - L1ME4a LINE L1 -31 6090 5856 427 290 152 37 chr3 18787366 18787428 -208737150 - HAL1b LINE L1 -6 1342 1289 1979 147 0 27 chr3 18787428 18787727 -208736851 - AluSq SINE Alu -21 292 2 427 290 152 37 chr3 18787727 18787819 -208736759 - HAL1b LINE L1 -59 1289 1209 1976 152 3 3 chr3 18787819 18788109 -208736469 - AluJb SINE Alu -22 290 1 427 290 152 37 chr3 18788109 18788170 -208736408 - HAL1b LINE L1 -139 1209 1101 264 86 0 138 chr3 18788208 18788247 -208736331 + MSTB2 LTR MaLR 361 391 -66 2411 106 0 0 chr3 18788247 18788558 -208736020 - AluSx SINE Alu -1 311 1 264 86 0 138 chr3 18788558 18788576 -208736002 + MSTB2 LTR MaLR 391 410 -47 338 232 14 0 chr3 18788612 18788681 -208735897 + L2 LINE L2 3232 3301 -12 358 260 19 19 chr3 18788681 18788835 -208735743 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 18789497 18789575 -208735003 + MIR3 SINE MIR 112 187 -21 862 188 75 11 chr3 18789685 18789871 -208734707 + MIR SINE MIR 56 253 -9 2418 100 0 3 chr3 18789988 18790297 -208734281 + AluSx SINE Alu 1 308 -4 791 216 39 39 chr3 18790441 18790649 -208733929 - MIR SINE MIR -4 258 51 354 129 0 0 chr3 18791017 18791079 -208733499 + (GGA)n Simple_repeat Simple_repeat 2 63 0 2507 63 0 0 chr3 18791385 18791684 -208732894 - AluY SINE Alu -12 299 1 912 137 8 0 chr3 18792503 18792634 -208731944 - FLAM_C SINE Alu -1 132 1 771 194 0 8 chr3 18792973 18793107 -208731471 - FLAM_A SINE Alu 0 133 1 591 177 223 29 chr3 18793127 18793302 -208731276 - MER20 DNA MER1_type -4 215 7 718 203 34 14 chr3 18793356 18793504 -208731074 + MIR SINE MIR 34 184 -78 2404 74 7 3 chr3 18793640 18793938 -208730640 - AluSg SINE Alu -11 299 1 1021 155 14 0 chr3 18794457 18794605 -208729973 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 18794611 18794709 -208729869 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 18794717 18794877 -208729701 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 18794877 18795193 -208729385 + AluSg SINE Alu 1 310 0 2149 127 6 22 chr3 18795536 18795883 -208728695 - AluJb SINE Alu 0 342 1 290 253 27 27 chr3 18795894 18795969 -208728609 - MIR SINE MIR -63 145 70 328 254 45 45 chr3 18796306 18796440 -208728138 - MIR SINE MIR -68 194 61 1912 49 0 9 chr3 18796447 18796701 -208727877 + AluY SINE Alu 60 311 0 255 208 62 0 chr3 18796823 18796871 -208727707 + L2 LINE L2 3213 3263 -9 338 338 114 43 chr3 18796875 18797295 -208727283 + L3 LINE CR1 935 1384 -193 566 154 22 22 chr3 18797303 18797439 -208727139 + CT-rich Low_complexity Low_complexity 1 136 0 834 189 0 13 chr3 18797462 18797774 -208726804 - FRAM SINE Alu 0 176 26 821 315 82 16 chr3 18797962 18798413 -208726165 + Charlie7 DNA MER1_type 60 540 -2072 211 219 0 0 chr3 18798666 18798707 -208725871 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 320 188 0 12 chr3 18799086 18799171 -208725407 + CT-rich Low_complexity Low_complexity 1 84 0 236 143 18 0 chr3 18799196 18799252 -208725326 + (CA)n Simple_repeat Simple_repeat 2 58 0 307 293 0 49 chr3 18799303 18799426 -208725152 + MIR SINE MIR 31 141 -67 2290 157 15 34 chr3 18799427 18799549 -208725029 + L1M4 LINE L1 5280 5403 -781 2347 90 3 3 chr3 18799549 18799848 -208724730 + AluSp SINE Alu 3 301 -12 2290 157 15 34 chr3 18799848 18800191 -208724387 + L1M4 LINE L1 5403 5736 -448 1329 105 0 6 chr3 18800191 18800363 -208724215 - AluSx SINE Alu -141 171 1 433 96 14 0 chr3 18800363 18800436 -208724142 + L1MB7 LINE L1 6111 6184 0 458 259 43 14 chr3 18801211 18801350 -208723228 - MIR3 SINE MIR -6 202 60 252 143 0 0 chr3 18801449 18801491 -208723087 - MIR SINE MIR -174 88 47 1080 226 190 26 chr3 18802466 18803154 -208721424 + L2 LINE L2 2463 3292 -21 1989 144 17 0 chr3 18803154 18803446 -208721132 - AluJo SINE Alu -15 297 1 1080 226 190 26 chr3 18803446 18803473 -208721105 + L2 LINE L2 3292 3313 0 2039 159 0 3 chr3 18803734 18804043 -208720535 + AluSx SINE Alu 3 310 -2 1095 141 63 74 chr3 18804150 18804377 -208720201 + MER33 DNA MER1_type 1 211 -2374 1715 168 13 30 chr3 18804377 18804680 -208719898 - AluJo SINE Alu -14 298 1 1095 141 63 74 chr3 18804680 18804748 -208719830 + MER33 DNA MER1_type 211 278 -46 393 284 89 35 chr3 18804907 18805076 -208719502 + L3 LINE CR1 1301 1478 -99 813 191 28 51 chr3 18805109 18805287 -208719291 + MER5A DNA MER1_type 7 180 -9 2567 43 13 3 chr3 18805291 18805592 -208718986 + AluY SINE Alu 1 304 -7 214 233 0 0 chr3 18805598 18805641 -208718937 + MIR SINE MIR 218 260 -2 244 270 203 27 chr3 18806021 18806169 -208718409 + MIR SINE MIR 82 255 -7 2300 107 10 3 chr3 18806315 18806623 -208717955 - AluSx SINE Alu -2 310 1 463 291 0 4 chr3 18806717 18806853 -208717725 - MIR SINE MIR -65 143 19 241 224 30 60 chr3 18807045 18807112 -208717466 + MIR SINE MIR 100 164 -98 2168 104 52 0 chr3 18807278 18807566 -208717012 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 18807571 18807593 -208716985 + AT_rich Low_complexity Low_complexity 1 22 0 2368 71 20 7 chr3 18807976 18808272 -208716306 - AluY SINE Alu -11 300 1 1660 163 4 14 chr3 18808274 18808550 -208716028 - AluJb SINE Alu -21 291 19 1852 181 34 32 chr3 18808651 18809093 -208715485 - pTR5 LTR ERV1 -1254 1184 742 1108 174 0 20 chr3 18809182 18809377 -208715201 + AluJo SINE Alu 5 195 -117 225 276 153 0 chr3 18809446 18809544 -208715034 - MER113 DNA MER1_type? -31 490 378 875 194 55 0 chr3 18809544 18809709 -208714869 + MIR SINE MIR 3 176 -86 642 228 14 84 chr3 18809745 18810030 -208714548 - MER113 DNA MER1_type? -137 384 120 1406 59 0 0 chr3 18810038 18810208 -208714370 + L1PA11 LINE L1 6002 6171 -3 25 31 0 0 chr3 18810211 18810243 -208714335 + AT_rich Low_complexity Low_complexity 1 32 0 8322 56 4 10 chr3 18810267 18811280 -208713298 + LTR13 LTR ERVK 1 1007 0 2231 118 17 0 chr3 18811309 18811606 -208712972 + AluSx SINE Alu 3 304 -8 271 189 44 22 chr3 18811608 18811698 -208712880 - MER113 DNA MER1_type? -422 99 8 266 280 133 36 chr3 18811946 18812039 -208712539 + L1MC5 LINE L1 7612 7695 -266 2142 133 3 0 chr3 18812039 18812332 -208712246 + AluSx SINE Alu 1 294 -18 266 280 133 36 chr3 18812332 18812517 -208712061 + L1MC5 LINE L1 7695 7917 -44 463 236 5 5 chr3 18812827 18812966 -208711612 + GA-rich Low_complexity Low_complexity 1 139 -480 2285 169 69 5 chr3 18812966 18813399 -208711179 - LOR1b LTR ERV1 0 461 1 463 236 5 5 chr3 18813399 18813446 -208711132 + GA-rich Low_complexity Low_complexity 138 619 0 1603 195 83 5 chr3 18813763 18814201 -208710377 - MLT2B1 LTR ERVL 0 520 2 514 258 106 35 chr3 18814307 18814505 -208710073 - MIR SINE MIR -37 225 14 308 331 75 30 chr3 18814736 18814869 -208709709 + MIR3 SINE MIR 8 146 -62 241 234 0 0 chr3 18815378 18815425 -208709153 - L2 LINE L2 -19 3294 3248 2197 101 59 42 chr3 18815637 18815995 -208708583 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 18816073 18816094 -208708484 + AT_rich Low_complexity Low_complexity 1 21 0 374 214 36 29 chr3 18816126 18816266 -208708312 - L1ME4a LINE L1 -30 6091 5951 231 292 0 0 chr3 18816863 18816928 -208707650 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 18816944 18816969 -208707609 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1841 184 18 21 chr3 18816971 18817356 -208707222 + MER65C LTR ERV1 78 461 0 261 261 0 46 chr3 18817388 18817453 -208707125 - MER58 DNA MER1_type -166 58 1 242 229 0 0 chr3 18817856 18817904 -208706674 + L1MC3 LINE L1 4284 4331 -1815 2380 79 0 3 chr3 18817910 18818202 -208706376 - AluY SINE Alu -15 296 6 21 36 0 0 chr3 18818202 18818230 -208706348 + AT_rich Low_complexity Low_complexity 1 28 0 1982 93 0 4 chr3 18818252 18818511 -208706067 + AluY SINE Alu 54 311 0 2614 175 33 32 chr3 18818559 18818600 -208705978 + L1MC3 LINE L1 4964 5003 -1143 1803 162 53 3 chr3 18818600 18818884 -208705694 + AluSx SINE Alu 1 298 -14 2614 175 33 32 chr3 18818884 18819027 -208705551 + L1MC3 LINE L1 5003 5144 -1002 2293 97 0 0 chr3 18819027 18819345 -208705233 - AluSc SINE Alu 0 309 1 2614 175 33 32 chr3 18819345 18819610 -208704968 + L1MC3 LINE L1 5144 4985 -1161 2318 86 20 0 chr3 18819610 18819902 -208704676 - AluSx SINE Alu -14 298 1 2614 175 33 32 chr3 18819902 18820323 -208704255 + L1MC3 LINE L1 4984 5403 -743 2761 137 169 20 chr3 18820367 18820922 -208703656 - MER67B LTR ERV1 -22 639 2 328 307 49 40 chr3 18822401 18822568 -208702010 - MIR SINE MIR -60 148 18 1141 197 5 23 chr3 18822686 18822904 -208701674 + AluJo SINE Alu 1 214 -98 273 146 0 0 chr3 18822906 18822947 -208701631 + AluJo/FLAM SINE Alu 82 122 -180 2190 108 0 3 chr3 18822947 18823242 -208701336 - AluSc SINE Alu -15 294 1 2614 162 39 25 chr3 18823244 18823507 -208701071 + L1MC3 LINE L1 5138 4990 -1156 2318 86 20 0 chr3 18823507 18823799 -208700779 - AluSx SINE Alu -14 298 1 2614 162 39 25 chr3 18823799 18824220 -208700358 + L1MC3 LINE L1 4989 5403 -743 2761 137 169 20 chr3 18824264 18824819 -208699759 - MER67B LTR ERV1 -22 639 2 249 33 0 0 chr3 18824819 18824849 -208699729 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2198 120 10 0 chr3 18824849 18825150 -208699428 - AluSq SINE Alu -9 304 1 2275 82 0 3 chr3 18825187 18825479 -208699099 - AluY SINE Alu -20 291 1 2122 190 11 25 chr3 18825480 18825923 -208698655 + L1MC3 LINE L1 5845 6281 -1504 1142 201 137 90 chr3 18825955 18826422 -208698156 - MER41B LTR ERV1 -34 601 113 6199 144 96 76 chr3 18826422 18826978 -208697600 + L1MC3 LINE L1 6276 6820 -965 423 0 0 0 chr3 18826978 18827025 -208697553 + (CA)n Simple_repeat Simple_repeat 2 48 0 6199 144 96 76 chr3 18827025 18827249 -208697329 + L1MC3 LINE L1 6820 7038 -747 335 286 0 0 chr3 18827249 18827340 -208697238 + MLT1F1 LTR MaLR 35 125 -442 6199 144 96 76 chr3 18827340 18827635 -208696943 + L1MC3 LINE L1 7038 7326 -459 2289 113 24 34 chr3 18827635 18828014 -208696564 + THE1C LTR MaLR 1 375 0 6199 144 96 76 chr3 18828014 18828092 -208696486 + L1MC3 LINE L1 7326 7401 -384 2412 95 0 9 chr3 18828092 18828407 -208696171 + AluSx SINE Alu 1 312 0 6199 144 96 76 chr3 18828407 18828641 -208695937 + L1MC3 LINE L1 7401 7785 0 5582 170 38 142 chr3 18828614 18829013 -208695565 + L1MC4a LINE L1 5263 5702 -2106 * 889 198 64 0 chr3 18829013 18829185 -208695393 + AluJb SINE Alu 118 300 -12 5582 170 38 142 chr3 18829185 18829999 -208694579 + L1MC4a LINE L1 5702 6396 -1412 2265 110 3 0 chr3 18829999 18830298 -208694280 + AluSx SINE Alu 1 300 -12 5582 170 38 142 chr3 18830298 18830826 -208693752 + L1MC4a LINE L1 6396 6977 -831 441 0 0 0 chr3 18830848 18830897 -208693681 + (TTA)n Simple_repeat Simple_repeat 3 51 0 862 137 0 30 chr3 18832292 18832423 -208692155 - AluJb SINE Alu -185 127 1 1918 192 55 101 chr3 18832425 18832521 -208692057 + L1MC4a LINE L1 6969 7068 -740 2050 177 0 0 chr3 18832521 18832831 -208691747 + AluJb SINE Alu 1 310 -2 1918 192 55 101 chr3 18832831 18833426 -208691152 + L1MC4a LINE L1 7068 7628 -180 2355 95 0 0 chr3 18833426 18833720 -208690858 - AluSx SINE Alu -18 294 1 835 128 35 35 chr3 18833720 18833861 -208690717 - AluJo SINE Alu -166 146 6 1259 247 29 50 chr3 18833861 18834110 -208690468 - L1ME3 LINE L1 -217 5945 5692 2203 130 0 0 chr3 18834110 18834411 -208690167 - AluSq SINE Alu -12 301 1 1259 247 29 50 chr3 18834411 18834595 -208689983 - L1ME3 LINE L1 -470 5692 5535 1972 160 13 0 chr3 18834595 18834901 -208689677 + AluJb SINE Alu 1 310 -2 1259 247 29 50 chr3 18834901 18834964 -208689614 - L1ME3 LINE L1 -627 5535 5472 608 308 72 21 chr3 18834964 18835243 -208689335 + L2 LINE L2 2193 2485 -829 189 74 0 0 chr3 18835342 18835369 -208689209 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1936 117 30 0 chr3 18835381 18835647 -208688931 - AluSx SINE Alu -38 274 1 244 157 270 22 chr3 18835657 18835746 -208688832 - L1ME3 LINE L1 -7 6163 6052 1129 152 0 0 chr3 18835756 18835921 -208688657 + AluJb SINE Alu 132 296 -16 395 212 61 68 chr3 18836941 18837073 -208687505 - MIR3 SINE MIR -2 206 76 418 238 51 75 chr3 18837084 18837253 -208687325 - MIR SINE MIR -25 183 19 761 281 18 23 chr3 18837383 18837600 -208686978 + MIR SINE MIR 35 250 -12 216 323 149 29 chr3 18837631 18837907 -208686671 + L2 LINE L2 2953 3261 -11 * 312 279 161 7 chr3 18837890 18838087 -208686491 - MIR SINE MIR -15 247 23 216 279 0 16 chr3 18838149 18838210 -208686368 - L3b LINE CR1 -71 1512 1453 391 374 5 15 chr3 18838644 18838839 -208685739 - MIR SINE MIR -65 197 5 183 294 31 150 chr3 18839072 18839365 -208685213 - L2 LINE L2 -49 3223 2966 585 227 147 90 chr3 18839964 18840133 -208684445 - MER102a DNA MER1_type -1100 317 159 2145 128 20 0 chr3 18840133 18840439 -208684139 - AluSx SINE Alu 0 312 1 585 227 147 90 chr3 18840439 18840451 -208684127 - MER102a DNA MER1_type -1258 159 149 2321 116 0 0 chr3 18840451 18840754 -208683824 - AluSx SINE Alu -9 303 1 585 227 147 90 chr3 18840754 18840871 -208683707 - MER102a DNA MER1_type -1268 149 1 876 203 68 0 chr3 18841152 18841329 -208683249 + MER5A DNA MER1_type 1 189 0 2440 67 0 0 chr3 18841462 18841767 -208682811 + AluY SINE Alu 1 305 0 506 227 36 0 chr3 18841870 18841980 -208682598 - MIR SINE MIR -89 173 60 1593 116 81 149 chr3 18842117 18842405 -208682173 - Tigger3(Golem) DNA MER2_type -3 3025 2719 2561 56 0 10 chr3 18842405 18842708 -208681870 - AluY SINE Alu -11 300 1 1593 116 81 149 chr3 18842708 18842789 -208681789 - Tigger3(Golem) DNA MER2_type -309 2719 1 259 196 0 0 chr3 18842790 18842836 -208681742 + LTR16C LTR ERVL 435 480 -11 1478 221 115 17 chr3 18843176 18843584 -208680994 - LTR16C LTR ERVL -3 488 41 2055 125 0 32 chr3 18843588 18843901 -208680677 + AluSq SINE Alu 1 303 -10 264 234 62 0 chr3 18844093 18844157 -208680421 - MER5B DNA MER1_type 0 178 111 1720 254 112 35 chr3 18844366 18844694 -208679884 - MER20B DNA MER1_type -3 780 479 2349 123 0 0 chr3 18844694 18845004 -208679574 - AluSx SINE Alu -2 310 1 1720 254 112 35 chr3 18845004 18845363 -208679215 - MER20B DNA MER1_type -304 479 40 199 191 40 143 chr3 18845376 18845480 -208679098 - L2 LINE L2 -2521 793 703 1481 175 90 0 chr3 18845480 18845748 -208678830 + AluJo SINE Alu 15 306 -6 199 191 40 143 chr3 18845748 18845769 -208678809 - L2 LINE L2 -2611 703 681 * 253 272 82 89 chr3 18845752 18845910 -208678668 - MER5B DNA MER1_type -20 158 2 632 219 71 47 chr3 18845919 18846088 -208678490 + MER5B DNA MER1_type 1 173 -5 428 247 173 56 chr3 18846107 18846269 -208678309 - MER5A DNA MER1_type -5 184 4 978 152 11 42 chr3 18846280 18846471 -208678107 + MER5A DNA MER1_type 1 185 -4 335 257 35 44 chr3 18846947 18847060 -208677518 - MIR SINE MIR -126 136 25 355 237 15 74 chr3 18847220 18847355 -208677223 - MLT1J LTR MaLR -286 225 99 197 325 86 57 chr3 18847954 18848360 -208676218 - L2 LINE L2 -25 3247 2830 236 290 104 50 chr3 18848491 18848712 -208675866 - L2 LINE L2 -769 2545 2313 * 284 223 106 64 chr3 18848708 18848802 -208675776 + L2 LINE L2 3146 3243 -29 312 271 52 0 chr3 18850094 18850190 -208674388 - MER115 DNA AcHobo -80 613 513 527 237 199 5 chr3 18850203 18850389 -208674189 - L1ME1 LINE L1 -17 6149 5928 776 272 183 44 chr3 18850404 18850863 -208673715 - MER115 DNA AcHobo -168 525 3 2226 111 0 3 chr3 18850988 18851286 -208673292 - AluSc SINE Alu -12 297 1 534 287 97 51 chr3 18851298 18851336 -208673242 + L2 LINE L2 2898 2933 -380 2547 53 3 3 chr3 18851336 18851638 -208672940 - AluY SINE Alu -9 302 1 534 287 97 51 chr3 18851638 18851930 -208672648 + L2 LINE L2 2933 3243 -70 996 168 15 30 chr3 18851953 18852156 -208672422 - MER3 DNA MER1_type 0 209 10 2517 67 0 0 chr3 18852222 18852519 -208672059 - AluY SINE Alu -14 297 1 1062 184 10 15 chr3 18852521 18852727 -208671851 - AluSg/x SINE Alu -10 300 96 1402 180 75 0 chr3 18852913 18853218 -208671360 + L1MB5 LINE L1 5847 6174 0 2752 17 0 0 chr3 18853277 18853575 -208671003 - AluY SINE Alu -3 308 11 683 286 44 16 chr3 18853778 18854026 -208670552 - MIR SINE MIR 0 262 8 266 194 97 65 chr3 18854019 18854090 -208670488 - MIR SINE MIR -36 226 150 * 222 0 35 0 chr3 18854096 18854125 -208670453 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 2144 106 25 0 chr3 18854125 18854401 -208670177 - AluSp SINE Alu -27 286 1 266 194 97 65 chr3 18854401 18854422 -208670156 - MIR SINE MIR -112 150 131 2615 52 0 10 chr3 18854458 18854765 -208669813 - AluY SINE Alu -7 304 1 1135 83 0 0 chr3 18854782 18854915 -208669663 - AluY SINE Alu -178 133 1 272 27 27 0 chr3 18854915 18854952 -208669626 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 874 138 36 7 chr3 18854953 18855091 -208669487 - AluJb SINE Alu -50 262 121 227 291 82 55 chr3 18855114 18855224 -208669354 + MIR SINE MIR 53 165 -97 2353 103 0 7 chr3 18855281 18855583 -208668995 + AluSx SINE Alu 1 300 -12 922 231 86 101 chr3 18855610 18855995 -208668583 + MER45C DNA AcHobo 1 379 -574 1075 270 175 11 chr3 18856025 18856380 -208668198 + MER45C DNA AcHobo 448 860 -93 2165 123 6 19 chr3 18856380 18856696 -208667882 - AluSx SINE Alu 0 312 1 2266 121 0 3 chr3 18856718 18857023 -208667555 - AluSx SINE Alu -8 304 1 349 231 120 0 chr3 18857032 18857140 -208667438 - Charlie8 DNA MER1_type -2296 121 1 390 333 79 11 chr3 18857422 18857599 -208666979 + MER5A DNA MER1_type 1 189 0 2358 78 3 0 chr3 18857732 18858036 -208666542 + AluY SINE Alu 1 305 0 479 227 36 0 chr3 18858139 18858249 -208666329 - MIR SINE MIR -89 173 60 1601 116 81 149 chr3 18858386 18858674 -208665904 - Tigger3(Golem) DNA MER2_type -3 3026 2720 2149 112 0 10 chr3 18858674 18858977 -208665601 - AluY SINE Alu -11 300 1 1601 116 81 149 chr3 18858977 18859058 -208665520 - Tigger3(Golem) DNA MER2_type -309 2720 1 266 196 0 0 chr3 18859059 18859105 -208665473 + LTR16C LTR ERVL 435 480 -11 1532 221 115 17 chr3 18859445 18859853 -208664725 - LTR16C LTR ERVL -3 488 41 2255 99 0 32 chr3 18859857 18860170 -208664408 + AluSq SINE Alu 1 303 -10 249 216 0 0 chr3 18860362 18860413 -208664165 - MER5B DNA MER1_type 0 178 128 1790 254 112 35 chr3 18860635 18860963 -208663615 - MER20B DNA MER1_type -3 780 479 2351 123 0 0 chr3 18860963 18861273 -208663305 - AluSx SINE Alu -2 310 1 1790 254 112 35 chr3 18861273 18861632 -208662946 - MER20B DNA MER1_type -304 479 40 1482 175 90 0 chr3 18861749 18862017 -208662561 + AluJo SINE Alu 15 306 -6 219 272 82 89 chr3 18862021 18862179 -208662399 - MER5B DNA MER1_type -20 158 2 590 219 71 47 chr3 18862188 18862357 -208662221 + MER5B DNA MER1_type 1 173 -5 392 296 148 31 chr3 18862376 18862538 -208662040 - MER5A DNA MER1_type -5 184 4 917 152 11 42 chr3 18862549 18862740 -208661838 + MER5A DNA MER1_type 1 185 -4 308 266 37 37 chr3 18863216 18863325 -208661253 - MIR SINE MIR -126 136 28 225 262 78 57 chr3 18863325 18863466 -208661112 - MLT1L LTR MaLR 0 615 472 377 237 15 74 chr3 18863489 18863624 -208660954 - MLT1J LTR MaLR -286 225 99 252 341 78 50 chr3 18864223 18864481 -208660097 - L2 LINE L2 -25 3247 2983 221 294 104 50 chr3 18864760 18864981 -208659597 - L2 LINE L2 -769 2545 2313 * 254 223 106 64 chr3 18864977 18865071 -208659507 + L2 LINE L2 3146 3243 -29 320 271 52 0 chr3 18866363 18866459 -208658119 - MER115 DNA AcHobo -80 613 513 548 253 194 0 chr3 18866472 18866658 -208657920 - L1ME1 LINE L1 -17 6149 5928 903 277 183 44 chr3 18866673 18867132 -208657446 - MER115 DNA AcHobo -168 525 3 2250 97 0 39 chr3 18867257 18867567 -208657011 - AluSg SINE Alu -12 298 1 2274 98 9 32 chr3 18867578 18867894 -208656684 - AluSx SINE Alu -3 309 1 1243 137 0 0 chr3 18867901 18868076 -208656502 - AluSg/x SINE Alu -4 308 134 2754 17 0 0 chr3 18868076 18868370 -208656208 - AluYb8 SINE Alu -5 313 20 431 274 32 14 chr3 18868373 18868549 -208656029 - MIR SINE MIR -43 219 38 340 288 79 7 chr3 18869281 18869420 -208655158 - MIR SINE MIR -79 183 35 347 329 53 7 chr3 18870019 18870171 -208654407 + MIR SINE MIR 34 192 -70 467 333 25 0 chr3 18870512 18870671 -208653907 + MIR SINE MIR 86 248 -14 221 270 157 11 chr3 18871304 18871393 -208653185 + MIR SINE MIR 81 182 -80 962 146 0 7 chr3 18873827 18873971 -208650607 + FLAM_C SINE Alu 1 143 0 250 235 44 0 chr3 18875312 18875380 -208649198 + MIR SINE MIR 80 150 -112 277 265 25 63 chr3 18876011 18876160 -208648418 + MIR SINE MIR 37 145 -63 327 252 195 8 chr3 18876510 18876633 -208647945 + MIR SINE MIR 2 147 -115 2448 87 0 0 chr3 18876637 18876936 -208647642 + AluSx SINE Alu 1 299 -13 1180 158 0 0 chr3 18876936 18877101 -208647477 + AluSq SINE Alu 134 298 -15 209 284 14 27 chr3 18877365 18877439 -208647139 - MIR SINE MIR -15 247 175 3310 193 75 95 chr3 18877480 18877984 -208646594 - L1MC4 LINE L1 -600 7442 6930 1721 164 14 21 chr3 18877984 18878270 -208646308 - AluJb SINE Alu -14 298 15 3310 193 75 95 chr3 18878270 18879001 -208645577 - L1MC4 LINE L1 -1112 6930 6228 1856 115 30 54 chr3 18879001 18879135 -208645443 + AluSx SINE Alu 5 141 -171 2639 43 0 7 chr3 18879135 18879440 -208645138 + AluY SINE Alu 1 303 -8 1856 115 30 54 chr3 18879440 18879601 -208644977 + AluSx SINE Alu 141 293 -19 3310 193 75 95 chr3 18879601 18879710 -208644868 - L1MC4 LINE L1 -1814 6228 6118 883 120 0 8 chr3 18879712 18879837 -208644741 + FLAM_C SINE Alu 1 124 -9 712 0 0 0 chr3 18879847 18879932 -208644646 + L1PA6 LINE L1 6064 6148 -6 1393 187 139 17 chr3 18879954 18880307 -208644271 - MSTD LTR MaLR 0 396 1 2334 109 3 0 chr3 18880317 18880621 -208643957 + AluSx SINE Alu 3 307 -5 213 259 17 0 chr3 18880657 18880715 -208643863 + MIR SINE MIR 80 138 -124 * 252 288 0 12 chr3 18880713 18880793 -208643785 - MIR SINE MIR 0 262 184 350 241 200 14 chr3 18880839 18880984 -208643594 - MIR SINE MIR -72 190 19 574 278 43 22 chr3 18881412 18881642 -208642936 + MIR SINE MIR 21 255 -7 282 172 250 0 chr3 18881775 18881839 -208642739 + Tigger5 DNA MER2_type 1 80 -2243 276 254 0 0 chr3 18881874 18881929 -208642649 + Tigger5 DNA MER2_type 2269 2323 0 1793 129 90 7 chr3 18882115 18882393 -208642185 - AluJb SINE Alu -11 301 1 456 271 9 98 chr3 18882393 18882514 -208642064 + MIR SINE MIR 45 138 -124 2359 98 0 10 chr3 18882514 18882819 -208641759 - AluSc SINE Alu -7 302 1 456 271 9 98 chr3 18882819 18882922 -208641656 + MIR SINE MIR 138 249 -13 1204 137 17 0 chr3 18883512 18883687 -208640891 + AluJb SINE Alu 121 298 -14 2357 98 0 13 chr3 18884025 18884330 -208640248 - AluSx SINE Alu -11 301 1 1686 174 80 22 chr3 18884330 18884818 -208639760 - L1MB3 LINE L1 -40 6143 5577 2340 106 0 13 chr3 18884823 18885135 -208639443 - AluSx SINE Alu -4 308 1 256 281 74 25 chr3 18885211 18885332 -208639246 - L1ME4a LINE L1 -16 6105 5979 271 234 0 0 chr3 18885604 18885668 -208638910 - L1ME4a LINE L1 -2062 5746 5683 382 241 118 94 chr3 18886659 18886871 -208637707 + Charlie8 DNA MER1_type 21 237 -2180 482 248 134 15 chr3 18887334 18887530 -208637048 - MIR SINE MIR -15 247 28 203 269 15 45 chr3 18887731 18887798 -208636780 + L2 LINE L2 3249 3313 0 357 250 155 0 chr3 18888257 18888373 -208636205 + MER46C DNA MER2_type 6 139 -199 514 161 11 0 chr3 18888389 18888476 -208636102 - MER2 DNA MER2_type -257 88 1 658 227 117 0 chr3 18888488 18888651 -208635927 + MER46C DNA MER2_type 157 338 0 346 217 178 38 chr3 18888653 18888810 -208635768 - MIR SINE MIR -71 191 13 531 138 64 0 chr3 18890530 18890624 -208633954 + AluSg/x SINE Alu 190 289 -20 1413 158 65 15 chr3 18890846 18891106 -208633472 + AluJb SINE Alu 19 291 -21 253 309 74 0 chr3 18892111 18892192 -208632386 - MIR SINE MIR -65 197 111 662 226 0 20 chr3 18893640 18893786 -208630792 + FAM SINE Alu 1 143 -42 1951 169 3 0 chr3 18893813 18894115 -208630463 + AluSx SINE Alu 1 303 -9 286 69 0 69 chr3 18894321 18894379 -208630199 + MER4B LTR ERV1 1 54 -556 1529 148 139 3 chr3 18894392 18894695 -208629883 + MER4E LTR ERV1 415 758 -8 191 220 77 5 chr3 18896283 18896392 -208628186 + MIR SINE MIR 86 248 -14 226 324 14 0 chr3 18897671 18897745 -208626833 - MIR SINE MIR -78 184 110 897 147 0 0 chr3 18897792 18897921 -208626657 - FLAM_A SINE Alu -6 136 8 495 175 0 35 chr3 18897935 18898049 -208626529 - AluJb SINE Alu 0 312 203 1875 180 0 0 chr3 18898117 18898411 -208626167 + AluJo SINE Alu 1 294 -18 890 222 248 4 chr3 18898414 18898680 -208625898 + L1ME LINE L1 5294 5624 -542 2185 121 0 3 chr3 18898680 18898977 -208625601 + AluSq SINE Alu 1 296 -17 694 204 0 0 chr3 18899367 18899499 -208625079 + AluJo/FLAM SINE Alu 1 132 -170 1135 234 8 11 chr3 18899500 18899761 -208624817 + AluJo SINE Alu 1 260 -52 2071 144 28 3 chr3 18900280 18900635 -208623943 + THE1B LTR MaLR 1 364 0 548 96 24 0 chr3 18900635 18900718 -208623860 + THE1B-int LTR MaLR 1 85 -1495 1728 161 99 28 chr3 18900718 18901288 -208623290 - MER51B LTR ERV1 -1 376 1 459 61 15 0 chr3 18901288 18901354 -208623224 + THE1B-int LTR MaLR 87 153 -1427 9228 98 42 44 chr3 18901354 18902841 -208621737 + THE1B-int LTR MaLR 97 1580 0 2236 132 22 0 chr3 18902841 18903197 -208621381 + THE1B LTR MaLR 1 364 0 572 277 93 6 chr3 18903260 18903494 -208621084 + MIR SINE MIR 4 259 -3 247 267 0 0 chr3 18903747 18903822 -208620756 - L1ME4a LINE L1 -1 6120 6046 332 316 43 32 chr3 18903970 18904001 -208620577 - L1ME4a LINE L1 0 6121 6092 2335 107 3 0 chr3 18904001 18904301 -208620277 + AluSp SINE Alu 1 301 -12 332 316 43 32 chr3 18904301 18904456 -208620122 - L1ME4a LINE L1 -29 6092 5933 279 0 0 0 chr3 18904685 18904716 -208619862 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7504 52 16 9 chr3 18904725 18906253 -208618325 - SVA Other Other -799 1386 5 305 280 0 40 chr3 18906675 18906775 -208617803 + MIR SINE MIR 35 130 -132 298 167 0 0 chr3 18907403 18907457 -208617121 + L1MD1 LINE L1 6116 6169 -73 400 329 62 18 chr3 18907533 18907601 -208616977 - L1ME4a LINE L1 -320 5801 5737 2281 113 0 3 chr3 18907601 18907912 -208616666 - AluSq SINE Alu -3 310 1 400 329 62 18 chr3 18907912 18908068 -208616510 - L1ME4a LINE L1 -384 5737 5567 189 313 0 16 chr3 18908182 18908246 -208616332 + L2 LINE L2 3210 3272 0 2357 69 10 3 chr3 18908589 18908895 -208615683 + AluSp SINE Alu 1 308 -5 342 311 66 8 chr3 18909819 18909983 -208614595 - MIR SINE MIR -55 207 29 257 238 16 16 chr3 18910448 18910511 -208614067 - MIR SINE MIR 0 262 200 482 310 58 0 chr3 18910906 18911061 -208613517 - MIR SINE MIR -78 184 21 771 202 0 0 chr3 18911674 18911803 -208612775 - FLAM_C SINE Alu -14 129 1 261 0 0 0 chr3 18911815 18911844 -208612734 + (T)n Simple_repeat Simple_repeat 1 29 0 2285 95 0 0 chr3 18918697 18919002 -208605576 + AluY SINE Alu 1 305 -6 216 306 0 47 chr3 18920128 18920213 -208604365 - MIR SINE MIR -117 145 65 1042 192 138 100 chr3 18920403 18920469 -208604109 + LTR10B LTR ERV1 1 63 -484 2434 42 0 0 chr3 18920469 18920776 -208603802 + AluY SINE Alu 1 307 0 1042 192 138 100 chr3 18920776 18921230 -208603348 + LTR10B LTR ERV1 63 542 -5 2482 55 3 0 chr3 18922128 18922436 -208602142 + AluY SINE Alu 1 309 -2 199 322 35 11 chr3 18922802 18922889 -208601689 + L3 LINE CR1 1134 1222 -355 289 286 171 6 chr3 18923054 18923229 -208601349 + L2 LINE L2 2939 3142 -171 6184 103 66 10 chr3 18923515 18924418 -208600160 + LTR13 LTR ERVK 1 954 0 578 216 18 0 chr3 18927050 18927161 -208597417 - L1MA7 LINE L1 -6 6285 6173 673 257 36 28 chr3 18927161 18927410 -208597168 + L1MA7 LINE L1 5895 6145 -146 229 279 29 0 chr3 18929488 18929556 -208595022 + L2 LINE L2 3242 3311 -2 180 317 58 48 chr3 18930535 18930639 -208593939 - MIR3 SINE MIR -7 201 97 231 287 35 11 chr3 18930773 18930860 -208593718 + L3 LINE CR1 1134 1222 -355 254 273 91 9 chr3 18931175 18931285 -208593293 + L2 LINE L2 3024 3142 -171 180 297 27 14 chr3 18933101 18933175 -208591403 + L2 LINE L2 2906 2980 -333 360 0 0 0 chr3 18933457 18933497 -208591081 + (TG)n Simple_repeat Simple_repeat 2 41 0 3295 98 35 8 chr3 18934364 18934844 -208589734 - LTR15 LTR ERV1 0 493 1 330 359 62 0 chr3 18935047 18935175 -208589403 + MER5B DNA MER1_type 3 138 -40 2256 109 0 13 chr3 18935643 18935956 -208588622 - AluSx SINE Alu -2 310 2 1186 199 53 115 chr3 18936190 18936484 -208588094 - L1MB4 LINE L1 0 6180 5937 1634 176 49 0 chr3 18936484 18936768 -208587810 - AluJo SINE Alu -14 298 1 1186 199 53 115 chr3 18936768 18937023 -208587555 - L1MB4 LINE L1 -243 5937 5668 827 218 0 0 chr3 18937060 18937202 -208587376 + FRAM SINE Alu 16 157 -19 1000 204 52 126 chr3 18937245 18937423 -208587155 + MLT1B LTR MaLR 1 191 -199 2212 94 3 0 chr3 18937423 18937720 -208586858 + AluSx SINE Alu 1 298 -14 1000 204 52 126 chr3 18937720 18937962 -208586616 + MLT1B LTR MaLR 191 390 0 4029 136 87 48 chr3 18938396 18939658 -208584920 + pTR5 LTR ERV1 741 2295 -143 199 253 46 81 chr3 18940109 18940196 -208584382 - MIR3 SINE MIR -34 174 91 22 56 0 0 chr3 18940412 18940448 -208584130 + AT_rich Low_complexity Low_complexity 1 36 0 313 315 92 15 chr3 18940927 18941057 -208583521 + L1MC4a LINE L1 6064 6203 -1605 892 329 38 11 chr3 18941059 18941530 -208583048 + ERVL LTR ERVL 4582 5065 -699 715 229 0 8 chr3 18941693 18941824 -208582754 + FRAM SINE Alu 1 130 -46 287 239 11 22 chr3 18942342 18942434 -208582144 + LTR41 LTR ERVL 17 107 -666 396 364 48 0 chr3 18942842 18943007 -208581571 - L1M4 LINE L1 -1232 4914 4742 504 343 171 0 chr3 18943135 18943249 -208581329 - L1M4 LINE L1 -1575 4571 4478 1657 182 17 3 chr3 18943249 18943546 -208581032 - AluJo SINE Alu -11 301 1 504 343 171 0 chr3 18943546 18943740 -208580838 - L1M4 LINE L1 -1668 4478 4210 303 174 16 36 chr3 18943740 18943822 -208580756 + AluJ/FLAM SINE Alu 5 60 -242 1226 311 118 62 chr3 18944228 18944634 -208579944 - L1M4 LINE L1 -2509 3637 3255 2101 136 0 3 chr3 18944634 18944944 -208579634 - AluSx SINE Alu -3 309 1 1226 311 118 62 chr3 18944944 18945772 -208578806 - L1M4 LINE L1 -2891 3255 2199 2307 233 19 42 chr3 18946400 18946967 -208577611 - MLT2B3 LTR ERVL 0 554 1 215 269 6 50 chr3 18947810 18947992 -208576586 + C-rich Low_complexity Low_complexity 4 177 0 1071 163 24 14 chr3 18948269 18948478 -208576100 - AluJb SINE Alu -17 295 85 251 288 9 27 chr3 18949263 18949374 -208575204 - MER103 DNA DNA -57 109 1 1445 164 53 4 chr3 18950057 18950320 -208574258 + AluJb SINE Alu 1 276 -36 296 365 153 6 chr3 18950320 18951000 -208573578 - L2 LINE L2 -634 2680 1901 261 75 0 0 chr3 18955479 18955519 -208569059 + (TA)n Simple_repeat Simple_repeat 1 40 0 195 42 0 0 chr3 18956213 18956237 -208568341 + (TGG)n Simple_repeat Simple_repeat 2 25 0 309 82 0 0 chr3 18957671 18957720 -208566858 + (A)n Simple_repeat Simple_repeat 1 49 0 1095 223 38 0 chr3 18961971 18962182 -208562396 + MER20 DNA MER1_type 1 219 0 404 283 169 22 chr3 18965098 18965282 -208559296 - Charlie8 DNA MER1_type -2206 211 1 229 323 81 0 chr3 18966137 18966261 -208558317 - MIR SINE MIR -93 169 36 383 288 169 0 chr3 18967344 18967521 -208557057 - MIR SINE MIR -34 228 22 1430 12 0 0 chr3 18967562 18967725 -208556853 + AluYb8 SINE Alu 155 317 -1 621 291 92 46 chr3 18967804 18968305 -208556273 + MLT1K LTR MaLR 2 525 -63 248 123 247 27 chr3 18969010 18969083 -208555495 - MIR SINE MIR -128 134 46 343 336 28 0 chr3 18971001 18971108 -208553470 - MIR SINE MIR -36 226 117 308 273 148 8 chr3 18971165 18971293 -208553285 + MIR SINE MIR 47 192 -70 514 344 100 17 chr3 18971568 18971929 -208552649 + L1MC4a LINE L1 5508 5898 -1910 3930 195 20 0 chr3 18972104 18972808 -208551770 - L1MC1 LINE L1 0 6333 5616 26 0 0 0 chr3 18972844 18972870 -208551708 + AT_rich Low_complexity Low_complexity 1 26 0 339 338 20 13 chr3 18973070 18973221 -208551357 + MIR3 SINE MIR 23 174 -34 209 360 35 0 chr3 18973434 18973520 -208551058 - L3 LINE CR1 -329 1248 1160 1792 136 0 21 chr3 18973559 18973845 -208550733 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr3 18973845 18973866 -208550712 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 448 291 72 52 chr3 18974840 18975146 -208549432 - MER113 DNA MER1_type? -99 422 111 378 268 33 0 chr3 18975811 18975950 -208548628 + MLT1J LTR MaLR 63 168 -278 808 261 26 13 chr3 18976528 18976754 -208547824 - MIR SINE MIR -24 238 10 2035 137 3 0 chr3 18981055 18981355 -208543223 + AluSx SINE Alu 1 301 -11 570 225 33 13 chr3 18982199 18982350 -208542228 + Charlie8 DNA MER1_type 39 192 -2225 254 286 48 9 chr3 18983811 18983916 -208540662 + MLT1I LTR MaLR 59 167 -242 301 196 18 0 chr3 18983944 18984000 -208540578 - L2 LINE L2 -1 3312 3256 382 355 113 5 chr3 18984089 18984275 -208540303 + MIR SINE MIR 5 210 -52 224 208 183 0 chr3 18984402 18984509 -208540069 - L2 LINE L2 -252 3061 2922 * 271 309 36 18 chr3 18984501 18984611 -208539967 - MIR SINE MIR -123 139 28 724 248 0 0 chr3 18985204 18985337 -208539241 - FLAM_A SINE Alu 0 133 1 411 220 40 0 chr3 18985702 18985802 -208538776 + MLT1K LTR MaLR 485 588 0 317 305 122 24 chr3 18985889 18986102 -208538476 - L3 LINE CR1 0 1577 1344 189 366 0 24 chr3 18986459 18986541 -208538037 + MIR SINE MIR 155 234 -28 296 367 51 6 chr3 18986875 18987033 -208537545 - L3 LINE CR1 -22 1555 1391 188 369 31 11 chr3 18987382 18987563 -208537015 + MIR SINE MIR 5 259 -3 377 271 16 16 chr3 18987701 18987823 -208536755 - MIR SINE MIR -120 142 21 251 270 14 0 chr3 18988214 18988288 -208536290 + L1ME LINE L1 5582 5656 -506 625 321 51 4 chr3 18988502 18988739 -208535839 - MIR SINE MIR 0 262 15 2336 91 0 0 chr3 18991958 18992256 -208532322 - AluSx SINE Alu -14 298 1 577 258 20 7 chr3 18992525 18992692 -208531886 + MIR SINE MIR 12 181 -58 267 250 13 40 chr3 18992771 18992847 -208531731 - MIR3 SINE MIR -29 179 106 414 312 112 36 chr3 18994759 18995035 -208529543 + L2 LINE L2 3017 3313 0 515 315 43 30 chr3 18997047 18997282 -208527296 + L2 LINE L2 3072 3309 -4 2396 63 0 3 chr3 18997344 18997643 -208526935 + AluY SINE Alu 1 298 -13 1150 235 104 3 chr3 18997720 18998065 -208526513 + MLT1B LTR MaLR 11 390 0 351 337 118 17 chr3 18998067 18998255 -208526323 - MIR SINE MIR -41 167 9 251 380 60 7 chr3 18999023 18999173 -208525405 + MIR3 SINE MIR 19 176 -32 193 323 30 30 chr3 19000410 19000509 -208524069 + L2 LINE L2 2426 2524 -790 255 277 0 43 chr3 19000817 19000911 -208523667 + L1ME LINE L1 5469 5558 -563 394 266 77 24 chr3 19001487 19001656 -208522922 + L1ME LINE L1 5622 5799 -322 356 344 134 16 chr3 19001663 19001849 -208522729 + L3 LINE CR1 863 1070 -507 496 225 110 6 chr3 19001890 19002063 -208522515 - MER117 DNA MER1_type 0 197 7 510 303 196 38 chr3 19002112 19002429 -208522149 + L3 LINE CR1 1192 1558 -19 632 239 60 50 chr3 19003056 19003274 -208521304 + MIR SINE MIR 40 259 -3 217 319 90 52 chr3 19004067 19004221 -208520357 - MIR SINE MIR -58 150 7 191 333 14 14 chr3 19004661 19004730 -208519848 + L3 LINE CR1 983 1051 -526 335 315 52 37 chr3 19005124 19005291 -208519287 - MIR SINE MIR -60 148 18 777 176 8 0 chr3 19005409 19005534 -208519044 + FLAM_C SINE Alu 1 126 -17 1438 193 10 30 chr3 19005548 19005670 -208518908 + AluJo SINE Alu 1 124 -188 2244 90 0 13 chr3 19005670 19005969 -208518609 - AluY SINE Alu -16 295 1 1438 193 10 30 chr3 19005969 19006141 -208518437 + AluJo SINE Alu 124 289 -23 672 169 0 44 chr3 19006027 19006163 -208518415 + FRAM SINE Alu 41 170 -6 1798 146 3 72 chr3 19006164 19006499 -208518079 + AluSx SINE Alu 1 312 0 516 281 180 19 chr3 19007212 19007830 -208516748 + L2 LINE L2 2268 3019 -294 195 344 57 13 chr3 19007831 19007988 -208516590 - L2 LINE L2 -1520 1794 1631 180 318 16 16 chr3 19008015 19008078 -208516500 - L2 LINE L2 -1877 1437 1375 583 294 43 13 chr3 19009569 19009800 -208514778 + L2 LINE L2 3076 3313 0 211 321 66 29 chr3 19009999 19010136 -208514442 - MIR3 SINE MIR -59 149 8 571 335 64 4 chr3 19010933 19011184 -208513394 + Charlie8 DNA MER1_type 11 276 -2141 292 330 19 0 chr3 19011794 19011900 -208512678 + MIR SINE MIR 38 145 -63 829 168 65 0 chr3 19012763 19012948 -208511630 - L1MC1 LINE L1 -30 6303 6107 482 263 8 49 chr3 19012949 19013141 -208511437 - MIR SINE MIR -58 150 2 502 305 73 0 chr3 19013396 19013547 -208511031 + MIR SINE MIR 79 240 -22 215 227 0 5 chr3 19013774 19013830 -208510748 - L2 LINE L2 -11 3302 3206 182 401 29 22 chr3 19014019 19014156 -208510422 - L2 LINE L2 -921 2393 2256 203 273 0 0 chr3 19015191 19015235 -208509343 - L2 LINE L2 -19 3294 3251 206 351 70 9 chr3 19015617 19015731 -208508847 + MIR SINE MIR 87 207 -55 263 321 80 18 chr3 19015925 19016037 -208508541 - MIR SINE MIR -112 150 32 774 255 53 53 chr3 19016767 19017014 -208507564 - MIR SINE MIR -12 250 4 244 310 28 0 chr3 19017023 19017094 -208507484 - MIR3 SINE MIR -27 181 109 266 260 10 70 chr3 19017249 19017349 -208507229 - MIR SINE MIR -1 261 168 369 344 76 8 chr3 19018624 19018755 -208505823 - MIR SINE MIR -102 160 21 315 267 13 0 chr3 19018779 19018854 -208505724 + L2 LINE L2 3196 3271 -1 243 0 0 0 chr3 19019323 19019350 -208505228 + (CA)n Simple_repeat Simple_repeat 2 28 0 343 288 107 37 chr3 19019606 19019774 -208504804 - MIR SINE MIR -67 141 5 220 189 0 0 chr3 19019841 19019878 -208504700 + (CA)n Simple_repeat Simple_repeat 1 37 0 583 207 35 0 chr3 19020873 19020989 -208503589 + L2 LINE L2 3174 3293 -20 183 234 0 0 chr3 19022764 19022841 -208501737 + G-rich Low_complexity Low_complexity 4 80 0 239 223 0 64 chr3 19022910 19023004 -208501574 + G-rich Low_complexity Low_complexity 2 89 0 269 298 0 48 chr3 19023448 19023552 -208501026 - MIR SINE MIR -51 211 113 213 330 156 0 chr3 19023644 19023753 -208500825 + L2 LINE L2 3158 3283 -30 1015 206 20 10 chr3 19024153 19024487 -208500091 + L1MC4a LINE L1 5191 5528 -633 230 275 87 0 chr3 19025068 19025137 -208499441 + MIR SINE MIR 91 165 -97 818 236 16 6 chr3 19025975 19026157 -208498421 + MER58A DNA MER1_type 1 184 -40 294 323 105 8 chr3 19026361 19026609 -208497969 + L1MC4a LINE L1 5630 5901 -1907 291 124 4 89 chr3 19026686 19026764 -208497814 + Alu SINE Alu 238 297 -5 1602 109 35 0 chr3 19026817 19027076 -208497502 + AluSx SINE Alu 55 312 0 1151 192 0 10 chr3 19027137 19027345 -208497233 + AluJb SINE Alu 87 292 -20 394 274 0 28 chr3 19027631 19027737 -208496841 - MIR3 SINE MIR -15 193 91 358 317 38 38 chr3 19028275 19028461 -208496117 + L2 LINE L2 2893 3078 -194 818 65 0 0 chr3 19028662 19028769 -208495809 + L1MA3 LINE L1 6199 6305 0 284 339 115 12 chr3 19028790 19028955 -208495623 - MIR3 SINE MIR -17 191 10 304 335 71 13 chr3 19030022 19030177 -208494401 + MIR SINE MIR 80 243 -19 531 263 163 11 chr3 19030451 19030641 -208493937 - MIR SINE MIR -43 219 1 599 256 107 14 chr3 19030662 19030877 -208493701 - MIR SINE MIR -22 240 6 428 250 76 15 chr3 19030990 19031122 -208493456 + MIR SINE MIR 56 195 -67 326 342 181 0 chr3 19031627 19031820 -208492758 + L2 LINE L2 3086 3313 0 1779 167 0 35 chr3 19032077 19032388 -208492190 + AluJo SINE Alu 1 300 -12 438 333 58 0 chr3 19033130 19033301 -208491277 - MIR SINE MIR -62 200 20 357 198 12 35 chr3 19033311 19033397 -208491181 + MER5A DNA MER1_type 1 84 -105 2189 89 3 29 chr3 19033439 19033755 -208490823 + AluSg SINE Alu 1 308 -2 342 328 8 8 chr3 19033852 19033974 -208490604 - L2 LINE L2 -219 3053 2932 487 255 48 5 chr3 19034176 19034364 -208490214 + MER113 DNA MER1_type? 127 322 -199 256 344 31 49 chr3 19034695 19034858 -208489720 + MER113 DNA MER1_type? 322 481 -40 479 247 115 11 chr3 19035118 19035292 -208489286 - MIR SINE MIR -20 242 51 238 237 54 11 chr3 19035973 19036066 -208488512 + MLT1K LTR MaLR 484 580 -8 589 231 60 17 chr3 19036155 19036341 -208488237 + MIR SINE MIR 2 200 -62 520 188 86 8 chr3 19037262 19037390 -208487188 - Charlie1 DNA MER1_type 0 2761 2624 372 288 9 0 chr3 19037432 19037543 -208487035 - Charlie1 DNA MER1_type -2591 170 59 186 206 0 0 chr3 19037852 19037886 -208486692 - L2 LINE L2 -18 3254 3221 204 360 40 0 chr3 19037886 19037986 -208486592 - MIR SINE MIR -132 130 27 412 330 133 8 chr3 19038619 19038883 -208485695 + L2 LINE L2 2976 3272 0 413 305 104 7 chr3 19039351 19039505 -208485073 - MER91A DNA MER1_type -17 179 11 2593 45 0 0 chr3 19039837 19040145 -208484433 - AluY SINE Alu -3 308 1 286 325 20 66 chr3 19040995 19041146 -208483432 - MIR SINE MIR 0 262 119 263 355 65 16 chr3 19041455 19041579 -208482999 + MIR SINE MIR 103 232 -30 465 305 103 13 chr3 19042480 19042962 -208481616 + L1ME3A LINE L1 4971 5502 -668 483 277 30 56 chr3 19042994 19043153 -208481425 + L1ME3A LINE L1 5666 5813 -357 2246 106 0 3 chr3 19043153 19043465 -208481113 + AluSx SINE Alu 1 311 -1 483 277 30 56 chr3 19043465 19043617 -208480961 + L1ME3A LINE L1 5813 5967 -203 393 248 124 31 chr3 19043917 19044046 -208480532 - MIR3 SINE MIR -21 187 47 638 243 17 33 chr3 19044145 19044326 -208480252 + L2 LINE L2 3136 3313 0 555 207 76 35 chr3 19044447 19044592 -208479986 - MIR SINE MIR -78 184 34 240 288 0 0 chr3 19044842 19044908 -208479670 - MIR SINE MIR -61 147 82 259 207 17 35 chr3 19045315 19045373 -208479205 - L3 LINE CR1 -128 1449 1393 203 329 71 0 chr3 19045412 19045482 -208479096 - L2 LINE L2 -57 3215 3141 186 256 23 58 chr3 19045853 19045939 -208478639 + MIR SINE MIR 166 248 -14 189 0 0 0 chr3 19046901 19046922 -208477656 + (CAGGG)n Simple_repeat Simple_repeat 4 24 0 342 320 83 0 chr3 19047155 19047311 -208477267 + MIR3 SINE MIR 31 199 -9 22 70 0 0 chr3 19048972 19049015 -208475563 + GC_rich Low_complexity Low_complexity 1 43 0 45 104 0 0 chr3 19049043 19049207 -208475371 + GC_rich Low_complexity Low_complexity 1 164 0 23 33 0 0 chr3 19049248 19049278 -208475300 + GC_rich Low_complexity Low_complexity 1 30 0 248 279 0 0 chr3 19049662 19049730 -208474848 - MIR SINE MIR -116 146 79 308 217 123 9 chr3 19050226 19050332 -208474246 + MIR3 SINE MIR 5 122 -86 493 258 140 6 chr3 19050458 19050636 -208473942 - MIR SINE MIR -37 225 24 1618 159 70 4 chr3 19050923 19051194 -208473384 + AluJo SINE Alu 1 289 -23 298 286 7 88 chr3 19051356 19051503 -208473075 + MIR SINE MIR 74 208 -54 505 302 75 20 chr3 19051706 19052011 -208472567 + L1MC4a LINE L1 5255 5576 -2232 257 236 45 0 chr3 19052159 19052248 -208472330 + L1MC4a LINE L1 5833 5925 -1883 1203 132 15 0 chr3 19052520 19052724 -208471854 - MER7A DNA MER2_type -6 331 125 679 134 63 0 chr3 19052819 19052946 -208471632 - MER7A DNA MER2_type -212 134 2 415 197 63 175 chr3 19052991 19053094 -208471484 + L1MC4a LINE L1 5738 5804 -2004 1977 163 0 3 chr3 19053094 19053407 -208471171 + AluJb SINE Alu 1 312 0 415 197 63 175 chr3 19053407 19053526 -208471052 + L1MC4a LINE L1 5804 5935 -1873 542 260 8 8 chr3 19053531 19053654 -208470924 + FLAM_C SINE Alu 2 124 -9 24 0 0 0 chr3 19053654 19053678 -208470900 + AT_rich Low_complexity Low_complexity 1 24 0 295 319 58 51 chr3 19054084 19054268 -208470310 + MIR3 SINE MIR 4 187 -21 256 275 44 0 chr3 19054283 19054374 -208470204 + L3 LINE CR1 1375 1469 -108 198 379 33 13 chr3 19054839 19054992 -208469586 + L2 LINE L2 2632 2787 -527 335 245 77 43 chr3 19055125 19055333 -208469245 + L1MC/D LINE L1 5260 5474 -2334 249 341 127 8 chr3 19055522 19055648 -208468930 + L2 LINE L2 3098 3238 -34 392 327 62 19 chr3 19055807 19055969 -208468609 - MIR SINE MIR -4 258 90 2048 119 0 32 chr3 19055973 19056284 -208468294 - AluSx SINE Alu -8 304 4 187 333 81 20 chr3 19056310 19056409 -208468169 + MIR SINE MIR 39 143 -119 1494 179 11 37 chr3 19056725 19056803 -208467775 + L1MB7 LINE L1 4838 4917 -1229 2037 120 0 43 chr3 19056803 19057129 -208467449 + AluSx SINE Alu 1 312 0 1494 179 11 37 chr3 19057129 19057429 -208467149 + L1MB7 LINE L1 4917 5206 -940 870 205 0 0 chr3 19057439 19057595 -208466983 + FRAM SINE Alu 13 168 -8 3695 182 38 32 chr3 19057609 19058192 -208466386 + L1MB7 LINE L1 5232 5823 -361 729 125 62 23 chr3 19058192 19058320 -208466258 + FLAM_C SINE Alu 1 133 0 3695 182 38 32 chr3 19058320 19058672 -208465906 + L1MB7 LINE L1 5823 6171 -13 985 214 61 51 chr3 19058677 19059089 -208465489 + L1MC4 LINE L1 7624 8039 -3 252 269 185 9 chr3 19059316 19059424 -208465154 - L2 LINE L2 -2 3311 3185 489 246 25 0 chr3 19060637 19060759 -208463819 + MER3 DNA MER1_type 81 205 -4 316 258 178 19 chr3 19061139 19061352 -208463226 + MLT1K LTR MaLR 11 257 -292 252 158 18 0 chr3 19061631 19061688 -208462890 + MLT1H LTR MaLR 492 549 0 245 226 51 0 chr3 19062005 19062070 -208462508 - MIR SINE MIR -60 148 87 417 307 78 20 chr3 19062501 19062654 -208461924 + MIR SINE MIR 37 198 -64 198 302 0 0 chr3 19062972 19063025 -208461553 + MIR3 SINE MIR 142 194 -14 273 271 205 63 chr3 19063485 19063787 -208460791 + L2 LINE L2 2967 3311 -2 494 251 25 12 chr3 19063906 19064074 -208460504 - MIR SINE MIR -65 143 20 367 280 11 0 chr3 19064206 19064299 -208460279 - MIR SINE MIR -66 142 49 249 159 0 0 chr3 19064678 19064722 -208459856 + (TG)n Simple_repeat Simple_repeat 2 45 0 587 270 74 12 chr3 19064970 19065133 -208459445 + MIR SINE MIR 2 174 -88 682 252 93 18 chr3 19065256 19065482 -208459096 + MLT1K LTR MaLR 14 256 -332 473 256 122 45 chr3 19065511 19065757 -208458821 + MLT1K LTR MaLR 322 586 -2 25 31 0 0 chr3 19066343 19066375 -208458203 + AT_rich Low_complexity Low_complexity 1 32 0 417 278 119 20 chr3 19066384 19066600 -208457978 - MIR SINE MIR 0 262 24 297 278 43 108 chr3 19067336 19067613 -208456965 + L2 LINE L2 2985 3243 -29 212 256 0 0 chr3 19067637 19067680 -208456898 - L2 LINE L2 -16 3256 3214 731 254 45 9 chr3 19067685 19067905 -208456673 + MLT1K LTR MaLR 357 584 -4 182 294 47 24 chr3 19067907 19067992 -208456586 - MIR SINE MIR -137 125 39 2095 73 11 0 chr3 19067994 19068269 -208456309 - AluSx SINE Alu -5 307 30 604 287 58 22 chr3 19068634 19068857 -208455721 + L2 LINE L2 3083 3313 0 330 292 77 23 chr3 19069340 19069470 -208455108 - MIR SINE MIR -72 190 54 265 266 0 13 chr3 19070193 19070272 -208454306 + MIR SINE MIR 105 182 -80 296 284 191 38 chr3 19071367 19071764 -208452814 + L2 LINE L2 2592 3048 -265 1709 197 93 17 chr3 19071771 19072178 -208452400 - L1MB8 LINE L1 0 6178 5741 529 282 75 39 chr3 19072178 19072433 -208452145 + L2 LINE L2 3040 3303 -10 214 333 86 17 chr3 19072595 19072712 -208451866 + MIR SINE MIR 119 243 -19 211 356 107 13 chr3 19072871 19073020 -208451558 + L3 LINE CR1 1007 1169 -408 261 273 42 109 chr3 19073083 19073248 -208451330 + L3 LINE CR1 1299 1452 -125 251 260 29 58 chr3 19073863 19073967 -208450611 - MIR SINE MIR -149 113 13 293 320 25 16 chr3 19074110 19074232 -208450346 - MIR SINE MIR -117 145 23 1080 152 30 0 chr3 19075705 19075869 -208448709 - FAM SINE Alu -6 169 1 375 171 0 0 chr3 19075933 19076009 -208448569 + GA-rich Low_complexity Low_complexity 1 76 0 503 251 204 24 chr3 19076445 19076656 -208447922 - MIR SINE MIR -1 261 13 194 310 70 0 chr3 19076686 19076786 -208447792 - MIR SINE MIR -77 185 79 619 311 50 27 chr3 19077975 19078194 -208446384 - MIR SINE MIR -16 246 23 182 126 62 0 chr3 19078563 19078597 -208445981 - MIR SINE MIR -65 143 33 416 291 78 107 chr3 19078857 19079128 -208445450 - L3 LINE CR1 -23 1554 1292 975 234 6 0 chr3 19079226 19079540 -208445038 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 996 121 11 6 chr3 19079601 19079775 -208444803 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 280 359 29 0 chr3 19079891 19079994 -208444584 + MIR SINE MIR 86 191 -71 239 305 34 90 chr3 19080000 19080177 -208444401 + MIR SINE MIR 79 245 -17 359 282 169 16 chr3 19081058 19081377 -208443201 + LTR33 LTR ERVL 87 454 -67 197 154 0 26 chr3 19081436 19081475 -208443103 + L2 LINE L2 3008 3045 -227 225 0 0 0 chr3 19081898 19081923 -208442655 + (T)n Simple_repeat Simple_repeat 1 25 0 738 263 114 26 chr3 19082464 19082772 -208441806 - L2 LINE L2 -620 2694 2360 469 278 103 52 chr3 19082796 19082990 -208441588 - Charlie8 DNA MER1_type -2175 242 39 290 321 221 28 chr3 19083009 19083258 -208441320 + L2 LINE L2 2976 3272 0 232 284 54 14 chr3 19083266 19083340 -208441238 - MIR3 SINE MIR -43 165 89 327 341 22 7 chr3 19083819 19083954 -208440624 - MIR3 SINE MIR -49 159 23 * 375 252 45 65 chr3 19083916 19084071 -208440507 + MIR SINE MIR 42 193 -69 594 317 74 16 chr3 19084233 19084476 -208440102 - MIR SINE MIR -2 260 4 218 289 37 67 chr3 19084476 19084601 -208439977 - L3b LINE CR1 -188 1395 1275 274 243 14 14 chr3 19084700 19084770 -208439808 + (CGTG)n Simple_repeat Simple_repeat 2 71 0 728 219 0 0 chr3 19085000 19085128 -208439450 - FLAM_C SINE Alu -1 132 5 1755 158 10 10 chr3 19085137 19085428 -208439150 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 19085471 19085499 -208439079 + AT_rich Low_complexity Low_complexity 1 28 0 834 275 69 0 chr3 19085509 19085785 -208438793 + L1MC5 LINE L1 7302 7596 -365 736 225 84 0 chr3 19086010 19086188 -208438390 + MER113 DNA MER1_type? 117 309 -212 291 259 27 80 chr3 19086471 19086583 -208437995 - MIR SINE MIR -70 138 33 668 262 112 35 chr3 19086602 19086888 -208437690 - L2 LINE L2 -1 3312 3005 896 272 32 49 chr3 19086967 19087344 -208437234 - L1MD2 LINE L1 0 8042 6258 2367 40 0 4 chr3 19087614 19087892 -208436686 - AluY SINE Alu -14 297 21 25 31 0 0 chr3 19087893 19087925 -208436653 + AT_rich Low_complexity Low_complexity 1 32 0 466 170 85 0 chr3 19088090 19088196 -208436382 + MER96B DNA MER1_type? 303 417 0 900 156 75 0 chr3 19088318 19088491 -208436087 - MLT1B LTR MaLR 0 390 205 1139 258 136 18 chr3 19088493 19088537 -208436041 - MLT2B1 LTR ERVL -2 518 481 225 94 0 0 chr3 19088537 19088569 -208436009 + (TA)n Simple_repeat Simple_repeat 2 33 0 1139 258 136 18 chr3 19088569 19088981 -208435597 - MLT2B1 LTR ERVL -39 481 8 923 179 45 0 chr3 19088979 19089180 -208435398 - MLT1B LTR MaLR -180 210 1 * 1341 264 140 42 chr3 19090665 19091207 -208433371 + MLT1G1 LTR MaLR 1 595 0 595 229 83 13 chr3 19091307 19091464 -208433114 + MIR SINE MIR 84 251 -11 29 47 0 0 chr3 19091464 19091507 -208433071 + AT_rich Low_complexity Low_complexity 1 43 0 587 336 47 39 chr3 19092159 19092569 -208432009 + L1ME3A LINE L1 5473 5889 -281 2915 145 45 4 chr3 19092569 19093058 -208431520 + L1MB3 LINE L1 5672 6180 -3 587 336 47 39 chr3 19093058 19093135 -208431443 + L1ME3A LINE L1 5889 5964 -206 388 242 87 17 chr3 19093145 19093302 -208431276 + L1MC4 LINE L1 1977 6983 -1339 2309 108 24 19 chr3 19093309 19093727 -208430851 + L1MA1 LINE L1 5782 6201 -101 254 271 12 35 chr3 19093729 19093814 -208430764 + L1MC/D LINE L1 5495 5577 -767 704 110 0 0 chr3 19093831 19093931 -208430647 + L1MA1 LINE L1 6203 6302 0 421 340 45 13 chr3 19094883 19095039 -208429539 + MIR SINE MIR 23 183 -79 338 368 85 27 chr3 19095086 19095415 -208429163 + L2 LINE L2 2824 3171 -101 388 312 21 16 chr3 19095672 19095861 -208428717 + L2 LINE L2 2856 3045 -227 329 277 146 7 chr3 19096760 19096897 -208427681 - MIR3 SINE MIR -46 162 7 213 317 91 58 chr3 19098477 19098720 -208425858 + L2 LINE L2 2982 3232 -81 200 213 33 49 chr3 19098892 19098953 -208425625 - MIR SINE MIR -95 167 108 991 149 79 60 chr3 19099204 19099419 -208425159 + MER20B DNA MER1_type 1 219 0 193 320 31 41 chr3 19099458 19099555 -208425023 - MIR3 SINE MIR -26 182 87 208 322 11 56 chr3 19099907 19099997 -208424581 + MIR3 SINE MIR 13 98 -110 208 277 30 79 chr3 19099983 19100084 -208424494 + MIR SINE MIR 112 207 -55 374 255 301 52 chr3 19100106 19100455 -208424123 + L2 LINE L2 2871 3306 -7 195 311 198 0 chr3 19101508 19101614 -208422964 - L3 LINE CR1 -80 1497 1371 257 345 36 29 chr3 19102766 19102905 -208421673 - MIR3 SINE MIR -49 159 20 525 283 7 0 chr3 19103102 19103240 -208421338 + MIR SINE MIR 33 171 -91 216 378 12 0 chr3 19104479 19104561 -208420017 - MIR SINE MIR -71 191 109 208 264 0 28 chr3 19104583 19104655 -208419923 + L2 LINE L2 2966 3035 -237 186 240 0 0 chr3 19104689 19104739 -208419839 + CT-rich Low_complexity Low_complexity 2 51 0 272 208 56 0 chr3 19104758 19104830 -208419748 - MIR SINE MIR 0 262 187 808 219 145 26 chr3 19105584 19105812 -208418766 + MIR SINE MIR 8 262 0 279 313 0 12 chr3 19105931 19106059 -208418519 - MIR SINE MIR -59 203 79 634 268 49 32 chr3 19106394 19106640 -208417938 + L1ME3A LINE L1 5917 6166 -4 196 172 172 0 chr3 19106762 19106820 -208417758 + MIR SINE MIR 83 150 -58 243 293 37 12 chr3 19106823 19106905 -208417673 + MER5B DNA MER1_type 1 84 -94 2332 283 76 9 chr3 19106927 19107796 -208416782 - L1MD2 LINE L1 -7 6352 5426 336 349 18 0 chr3 19108203 19108312 -208416266 - L1MD2 LINE L1 -806 5436 5326 264 267 37 30 chr3 19108831 19108966 -208415612 - L1ME4a LINE L1 -7 6114 5979 293 243 27 14 chr3 19109856 19109930 -208414648 + MIR SINE MIR 81 155 -107 253 176 20 0 chr3 19110323 19110374 -208414204 + MIR3 SINE MIR 108 159 -49 338 226 86 0 chr3 19110466 19110559 -208414019 - MIR SINE MIR -47 215 115 419 212 62 18 chr3 19111486 19111599 -208412979 - MIR SINE MIR -70 192 75 220 278 15 105 chr3 19111529 19111662 -208412916 + L2 LINE L2 1391 1511 -1803 * 202 333 28 9 chr3 19112626 19112734 -208411844 - MIR SINE MIR -89 119 9 2187 114 0 0 chr3 19113011 19113317 -208411261 + AluSx SINE Alu 1 306 -6 376 327 9 0 chr3 19113456 19113566 -208411012 - MIR SINE MIR -79 183 73 1588 175 31 7 chr3 19114500 19114792 -208409786 + AluJo SINE Alu 7 305 -7 216 343 57 0 chr3 19114883 19114953 -208409625 - L2 LINE L2 -70 3202 3129 345 378 52 12 chr3 19115060 19115232 -208409346 - MIR SINE MIR -16 246 68 377 248 28 21 chr3 19116842 19116987 -208407591 + MLT1K LTR MaLR 87 232 -356 234 0 0 0 chr3 19117217 19117243 -208407335 + (TTCCC)n Simple_repeat Simple_repeat 1 26 0 421 290 57 0 chr3 19117360 19117484 -208407094 - MIR SINE MIR -64 198 68 820 226 39 81 chr3 19118966 19119298 -208405280 - L1MD2 LINE L1 -1 6358 6041 840 318 88 12 chr3 19119326 19119816 -208404762 - MER20B DNA MER1_type -50 733 207 3286 187 32 6 chr3 19120529 19121239 -208403339 + L1MB3 LINE L1 5414 6142 -41 233 231 0 0 chr3 19121233 19121285 -208403293 + L1M2 LINE L1 5773 5824 -488 * 240 308 42 49 chr3 19121776 19121919 -208402659 + L2 LINE L2 3172 3313 0 362 263 30 0 chr3 19122037 19122136 -208402442 - MIR SINE MIR -66 142 41 513 269 61 9 chr3 19123632 19123844 -208400734 + L2 LINE L2 2836 3058 -214 432 235 45 30 chr3 19125262 19125394 -208399184 + MIR SINE MIR 79 212 -50 422 259 43 0 chr3 19126054 19126170 -208398408 + MER5B DNA MER1_type 10 130 -48 292 256 37 12 chr3 19126274 19126356 -208398222 + MIR SINE MIR 106 189 -73 27 0 0 0 chr3 19128602 19128629 -208395949 + GC_rich Low_complexity Low_complexity 1 27 0 254 368 56 0 chr3 19128761 19128905 -208395673 + MIR SINE MIR 22 173 -89 352 296 176 39 chr3 19129062 19129397 -208395181 - L2 LINE L2 -91 3222 2842 186 226 75 0 chr3 19129475 19129528 -208395050 + MIR SINE MIR 119 175 -87 400 246 232 7 chr3 19129551 19129693 -208394885 - MIR SINE MIR -76 186 13 461 262 41 0 chr3 19129846 19129968 -208394610 - MIR3 SINE MIR -45 163 37 209 316 173 42 chr3 19130274 19130442 -208394136 - MIR SINE MIR -70 192 3 205 229 98 0 chr3 19130442 19130502 -208394076 - MIR3 SINE MIR -41 167 102 226 257 27 0 chr3 19131902 19131976 -208392602 - L1ME4a LINE L1 -106 6015 5940 995 138 88 0 chr3 19132047 19132206 -208392372 - FAM SINE Alu -1 174 2 268 340 20 0 chr3 19132448 19132548 -208392030 - L1ME4a LINE L1 -223 5947 5846 372 357 21 0 chr3 19134949 19135092 -208389486 - L2 LINE L2 -213 3059 2914 223 378 67 0 chr3 19135110 19135364 -208389214 - L2 LINE L2 -524 2790 2520 502 259 108 67 chr3 19135896 19136280 -208388298 + L1ME4a LINE L1 5654 6058 -63 1594 220 0 0 chr3 19136280 19136585 -208387993 - AluJo SINE Alu -7 305 1 502 259 108 67 chr3 19136585 19136617 -208387961 + L1ME4a LINE L1 6058 6087 -34 413 350 51 0 chr3 19136743 19136960 -208387618 + MIR SINE MIR 21 248 -14 210 286 83 12 chr3 19137029 19137113 -208387465 + MER91C DNA MER1_type 21 110 -30 302 285 248 7 chr3 19137147 19137284 -208387294 + MIR SINE MIR 58 227 -35 528 340 130 20 chr3 19137651 19138207 -208386371 + L2 LINE L2 2637 3272 0 505 228 41 28 chr3 19138368 19138513 -208386065 + MIR3 SINE MIR 3 149 -59 271 306 45 36 chr3 19138679 19138790 -208385788 + MIR SINE MIR 122 233 -29 * 323 339 45 0 chr3 19138788 19138900 -208385678 + L2 LINE L2 3193 3309 -4 548 241 85 0 chr3 19139425 19139566 -208385012 - L2 LINE L2 -1 3271 3119 351 383 158 8 chr3 19139732 19140098 -208384480 + L3 LINE CR1 931 1351 -226 395 288 25 0 chr3 19140147 19140265 -208384313 - MIR SINE MIR -80 182 62 257 309 200 36 chr3 19140268 19140488 -208384090 + L3 LINE CR1 1312 1567 -10 291 293 80 17 chr3 19141103 19141251 -208383327 + MIR SINE MIR 3 156 -52 665 315 156 8 chr3 19141636 19142020 -208382558 + L2 LINE L2 2873 3313 0 291 164 73 0 chr3 19142434 19142489 -208382089 + MIR SINE MIR 95 153 -55 311 243 103 0 chr3 19142572 19142679 -208381899 + MER113 DNA MER1_type? 67 184 -337 1581 206 88 29 chr3 19142679 19143053 -208381525 - MSTD LTR MaLR 0 396 1 534 271 118 50 chr3 19143457 19143840 -208380738 + L2 LINE L2 2555 2963 -351 187 320 51 0 chr3 19143863 19143941 -208380637 + L2 LINE L2 1849 1930 -1384 1743 182 10 75 chr3 19144204 19144314 -208380264 + L1MB7 LINE L1 5719 5835 -349 1733 148 14 31 chr3 19144314 19144604 -208379974 + AluJb SINE Alu 5 289 -23 1743 182 10 75 chr3 19144604 19144946 -208379632 + L1MB7 LINE L1 5835 6141 -43 2388 65 0 10 chr3 19144946 19145256 -208379322 + AluY SINE Alu 1 307 -4 1743 182 10 75 chr3 19145256 19145281 -208379297 + L1MB7 LINE L1 6141 6166 -18 299 326 90 14 chr3 19145282 19145426 -208379152 + L2 LINE L2 3159 3313 0 218 303 15 0 chr3 19145708 19145774 -208378804 - L2 LINE L2 -5 3267 3201 591 332 60 7 chr3 19146118 19146416 -208378162 + L2 LINE L2 2998 3311 -2 222 250 0 0 chr3 19147600 19147648 -208376930 - L2 LINE L2 -267 3046 2999 409 295 70 0 chr3 19147783 19147983 -208376595 + L2 LINE L2 2812 3025 -288 185 309 157 31 chr3 19148295 19148486 -208376092 - L3 LINE CR1 -16 1561 1347 1007 246 70 56 chr3 19148789 19149146 -208375432 + MLT1K LTR MaLR 83 444 -144 342 296 143 42 chr3 19149583 19149772 -208374806 - MIR SINE MIR -33 229 22 552 214 44 38 chr3 19150266 19150425 -208374153 + MER5A DNA MER1_type 12 171 -18 328 306 58 8 chr3 19151189 19151310 -208373268 - L2 LINE L2 -2 3311 3185 231 214 0 0 chr3 19151370 19151412 -208373166 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 272 327 59 39 chr3 19151537 19151690 -208372888 - L2 LINE L2 -262 3051 2896 491 307 78 43 chr3 19151812 19151865 -208372713 - MIR SINE MIR -4 258 208 2610 49 0 0 chr3 19151865 19152173 -208372405 - AluY SINE Alu -3 308 1 491 307 78 43 chr3 19152173 19152350 -208372228 - MIR SINE MIR -54 208 20 400 340 39 0 chr3 19153156 19153309 -208371269 - L2 LINE L2 -1 3312 3154 311 214 22 0 chr3 19153571 19153660 -208370918 - L2 LINE L2 -303 3010 2920 1219 211 37 9 chr3 19153660 19153983 -208370595 + L1MB7 LINE L1 5844 6175 -9 248 280 248 0 chr3 19153985 19154110 -208370468 - L2 LINE L2 -148 3165 3010 392 256 20 28 chr3 19154858 19155062 -208369516 - L2 LINE L2 -351 2962 2688 588 77 0 3 chr3 19155063 19155312 -208369266 + AluY SINE Alu 1 312 0 424 285 95 14 chr3 19155523 19155744 -208368834 - L2 LINE L2 -918 2396 2158 1636 161 4 18 chr3 19155895 19156189 -208368389 + AluJo SINE Alu 15 304 0 181 319 69 26 chr3 19156327 19156443 -208368135 + MIR SINE MIR 72 192 -70 314 289 10 21 chr3 19156653 19156750 -208367828 + L2 LINE L2 3179 3274 -39 326 309 134 7 chr3 19156754 19156903 -208367675 - MIR SINE MIR -60 202 35 361 211 167 0 chr3 19157665 19157755 -208366823 + L2 LINE L2 3162 3266 -6 913 245 5 0 chr3 19157795 19157983 -208366595 - MIR SINE MIR -60 202 14 205 245 306 0 chr3 19158003 19158101 -208366477 + L2 LINE L2 3145 3272 0 454 302 33 33 chr3 19158794 19158976 -208365602 - Charlie8 DNA MER1_type -2235 182 1 327 274 12 0 chr3 19159569 19159653 -208364925 + MLT1J LTR MaLR 73 157 -354 1368 207 95 108 chr3 19159790 19160496 -208364082 - L1MC4 LINE L1 -1115 6927 6227 1730 115 30 54 chr3 19160496 19160630 -208363948 + AluSx SINE Alu 5 141 -171 2489 43 0 7 chr3 19160630 19160935 -208363643 + AluY SINE Alu 1 303 -8 1730 115 30 54 chr3 19160935 19161096 -208363482 + AluSx SINE Alu 141 293 -19 1368 207 95 108 chr3 19161096 19161205 -208363373 - L1MC4 LINE L1 -1815 6227 6118 929 120 0 8 chr3 19161207 19161332 -208363246 + FLAM_C SINE Alu 1 124 -9 754 0 0 0 chr3 19161342 19161427 -208363151 + L1PA6 LINE L1 6064 6148 -6 1571 184 139 17 chr3 19161449 19161802 -208362776 - MSTD LTR MaLR 0 396 1 2195 109 3 0 chr3 19161812 19162116 -208362462 + AluSx SINE Alu 3 307 -5 216 259 17 0 chr3 19162152 19162210 -208362368 + MIR SINE MIR 80 138 -124 * 259 288 0 12 chr3 19162208 19162288 -208362290 - MIR SINE MIR 0 262 184 352 241 200 14 chr3 19162334 19162479 -208362099 - MIR SINE MIR -72 190 19 585 296 39 17 chr3 19162907 19163137 -208361441 + MIR SINE MIR 21 255 -7 286 172 250 0 chr3 19163271 19163335 -208361243 + Tigger5 DNA MER2_type 1 80 -2243 277 254 0 0 chr3 19163370 19163425 -208361153 + Tigger5 DNA MER2_type 2269 2323 0 1646 125 68 8 chr3 19163609 19163873 -208360705 - AluJb SINE Alu -10 302 23 327 228 16 102 chr3 19163882 19164009 -208360569 + MIR SINE MIR 39 154 -108 2313 88 0 7 chr3 19164009 19164316 -208360262 - AluSx SINE Alu -7 305 1 381 83 0 273 chr3 19164316 19164380 -208360198 + MER45 DNA AcHobo 1486 1566 -15 912 125 0 22 chr3 19164380 19164516 -208360062 - FLAM_C SINE Alu 0 133 1 381 83 0 273 chr3 19164516 19164528 -208360050 + MER45 DNA AcHobo 1566 1515 -66 2300 89 0 7 chr3 19164528 19164830 -208359748 - AluSg SINE Alu -10 300 1 381 83 0 273 chr3 19164830 19164884 -208359694 + MER45 DNA AcHobo 1514 1581 0 623 256 168 3 chr3 19165082 19165395 -208359183 - MLT1G1 LTR MaLR -254 336 1 813 193 0 7 chr3 19165516 19165651 -208358927 + AluJo SINE Alu 2 135 -177 288 194 0 45 chr3 19165913 19165980 -208358598 + MER4D LTR ERV1 1 64 -808 1552 145 139 3 chr3 19165984 19166287 -208358291 + MER4E LTR ERV1 415 758 -8 190 220 77 5 chr3 19167868 19167977 -208356601 + MIR SINE MIR 86 248 -14 226 324 14 0 chr3 19169256 19169330 -208355248 - MIR SINE MIR -78 184 110 845 147 0 0 chr3 19169377 19169506 -208355072 - FLAM_A SINE Alu -6 136 8 543 175 0 35 chr3 19169520 19169634 -208354944 - AluJb SINE Alu 0 312 203 1898 161 7 0 chr3 19169702 19170012 -208354566 + AluJo SINE Alu 1 312 0 2654 174 40 4 chr3 19170012 19170513 -208354065 + L1MB4 LINE L1 5656 6174 -6 234 305 181 0 chr3 19170553 19170658 -208353920 + MLT1K LTR MaLR 110 233 -355 451 254 66 19 chr3 19170784 19170988 -208353590 + MLT1H LTR MaLR 13 233 -316 2211 91 30 0 chr3 19171701 19171999 -208352579 + AluSx SINE Alu 1 307 -5 2097 129 0 10 chr3 19172494 19172805 -208351773 + AluSx SINE Alu 1 308 -4 239 253 115 0 chr3 19173732 19173819 -208350759 - HAL1 LINE L1 -1047 1460 1364 2115 97 0 52 chr3 19174164 19174493 -208350085 + AluSx SINE Alu 1 312 0 705 254 23 9 chr3 19174997 19175214 -208349364 - L1MC5 LINE L1 -36 7925 7706 418 165 0 33 chr3 19176217 19176308 -208348270 - AluJ/FRAM SINE Alu -9 303 216 204 333 58 0 chr3 19176725 19176812 -208347766 + L2 LINE L2 3147 3238 -34 362 327 62 19 chr3 19176971 19177133 -208347445 - MIR SINE MIR -4 258 90 2226 75 0 13 chr3 19177137 19177444 -208347134 - AluY SINE Alu -8 303 1 2178 208 32 11 chr3 19177444 19177968 -208346610 - L1MB3 LINE L1 -41 6142 5608 1103 86 37 113 chr3 19178644 19178970 -208345608 - AluSx SINE Alu -1 301 1 1402 105 18 5 chr3 19178972 19179191 -208345387 - L1P5 LINE L1 -467 5687 5466 235 274 27 0 chr3 19179191 19179264 -208345314 + MIR SINE MIR 91 165 -97 208 266 147 0 chr3 19180240 19180349 -208344229 - MIR SINE MIR -83 179 55 300 327 92 33 chr3 19181296 19181449 -208343129 + L3 LINE CR1 1407 1568 -9 290 308 0 0 chr3 19183158 19183249 -208341329 + MIR SINE MIR 80 170 -92 334 266 101 69 chr3 19183615 19183803 -208340775 - MLT1J LTR MaLR -295 216 23 2136 92 0 3 chr3 19184222 19184516 -208340062 + AluSg SINE Alu 1 293 -17 274 146 0 0 chr3 19184516 19184557 -208340021 - AluJo/FLAM SINE Alu -180 122 82 1076 197 5 23 chr3 19184559 19184777 -208339801 - AluJo SINE Alu -98 214 1 313 313 52 37 chr3 19184895 19185062 -208339516 + MIR SINE MIR 18 189 -60 309 193 0 36 chr3 19185566 19185649 -208338929 + L1PB3 LINE L1 6069 6148 -6 189 211 96 0 chr3 19185747 19185799 -208338779 - MIR SINE MIR -88 174 118 1930 119 20 14 chr3 19185975 19186269 -208338309 - AluSx SINE Alu -16 296 1 293 205 39 0 chr3 19186269 19186347 -208338231 - L1M4 LINE L1 -1228 4918 4838 1593 168 3 18 chr3 19186790 19187095 -208337483 + AluJb SINE Alu 4 304 0 232 333 0 53 chr3 19187547 19187661 -208336917 + L2 LINE L2 3126 3233 -39 300 287 139 8 chr3 19187665 19187787 -208336791 - MIR SINE MIR -60 202 65 412 143 71 10 chr3 19188181 19188279 -208336299 - L1MA1 LINE L1 -417 5885 5782 373 297 34 42 chr3 19188286 19188404 -208336174 - L1MC4 LINE L1 -1339 6703 6587 650 333 49 45 chr3 19188455 19188534 -208336044 - L1ME3A LINE L1 -206 5964 5887 2819 153 43 6 chr3 19188534 19189025 -208335553 - L1MB3 LINE L1 -3 6180 5672 650 333 49 45 chr3 19189025 19189435 -208335143 - L1ME3A LINE L1 -283 5887 5473 583 228 82 19 chr3 19190136 19190294 -208334284 - MIR SINE MIR -11 251 84 1289 264 140 42 chr3 19190395 19190937 -208333641 - MLT1G1 LTR MaLR 0 595 1 185 317 0 61 chr3 19191979 19192061 -208332517 - L2 LINE L2 -2901 413 337 1859 171 96 10 chr3 19192456 19192841 -208331737 + MSTA LTR MaLR 11 428 0 2242 87 10 0 chr3 19192860 19193160 -208331418 - AluSx SINE Alu -9 303 1 387 224 21 18 chr3 19193161 19193319 -208331259 - L1ME LINE L1 -343 5821 5666 494 311 70 14 chr3 19193356 19193776 -208330802 - L1ME LINE L1 -673 5497 5056 461 316 136 27 chr3 19195154 19195565 -208329013 + L2 LINE L2 2817 3272 0 484 228 41 28 chr3 19195726 19195871 -208328707 + MIR3 SINE MIR 3 149 -59 246 306 45 36 chr3 19196037 19196148 -208328430 + MIR SINE MIR 122 233 -29 * 276 348 45 0 chr3 19196146 19196258 -208328320 + L2 LINE L2 3193 3309 -4 577 241 62 7 chr3 19196783 19196928 -208327650 - L2 LINE L2 -1 3271 3119 297 379 71 0 chr3 19197133 19197315 -208327263 + L3 LINE CR1 981 1175 -402 380 288 25 0 chr3 19197509 19197627 -208326951 - MIR SINE MIR -80 182 62 232 303 134 42 chr3 19197708 19197850 -208326728 + L3 LINE CR1 1413 1567 -10 275 278 87 17 chr3 19198489 19198604 -208325974 + MIR SINE MIR 24 146 -116 594 299 164 16 chr3 19198998 19199382 -208325196 + L2 LINE L2 2873 3313 0 286 164 73 0 chr3 19199796 19199851 -208324727 + MIR SINE MIR 95 153 -55 325 243 103 0 chr3 19199934 19200041 -208324537 + MER113 DNA MER1_type? 67 184 -337 1524 206 88 29 chr3 19200041 19200415 -208324163 - MSTD LTR MaLR 0 396 1 467 271 118 50 chr3 19200819 19201202 -208323376 + L2 LINE L2 2555 2963 -351 1872 186 12 75 chr3 19201535 19201676 -208322902 + L1MB7 LINE L1 5698 5846 -338 1701 148 14 31 chr3 19201676 19201966 -208322612 + AluJb SINE Alu 5 289 -23 1872 186 12 75 chr3 19201966 19202308 -208322270 + L1MB7 LINE L1 5846 6141 -43 2364 65 0 10 chr3 19202308 19202618 -208321960 + AluY SINE Alu 1 307 -4 1872 186 12 75 chr3 19202618 19202643 -208321935 + L1MB7 LINE L1 6141 6166 -18 295 326 90 14 chr3 19202644 19202788 -208321790 + L2 LINE L2 3159 3313 0 196 235 20 0 chr3 19203085 19203136 -208321442 - L2 LINE L2 -20 3252 3201 500 336 60 7 chr3 19203480 19203778 -208320800 + L2 LINE L2 2998 3311 -2 182 292 0 0 chr3 19204962 19205010 -208319568 - L2 LINE L2 -267 3046 2999 393 285 70 0 chr3 19205145 19205345 -208319233 + L2 LINE L2 2812 3025 -288 1120 239 83 52 chr3 19206123 19206508 -208318070 + MLT1K LTR MaLR 48 444 -144 302 289 33 53 chr3 19206982 19207134 -208317444 - MIR SINE MIR -92 170 22 517 220 44 38 chr3 19207628 19207787 -208316791 + MER5A DNA MER1_type 12 171 -18 301 306 58 8 chr3 19208551 19208672 -208315906 - L2 LINE L2 -2 3311 3185 231 214 0 0 chr3 19208732 19208774 -208315804 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 254 314 59 39 chr3 19208899 19209052 -208315526 - L2 LINE L2 -262 3051 2896 416 303 78 43 chr3 19209174 19209227 -208315351 - MIR SINE MIR -4 258 208 2723 49 0 0 chr3 19209227 19209534 -208315044 - AluY SINE Alu -4 307 1 416 303 78 43 chr3 19209534 19209711 -208314867 - MIR SINE MIR -54 208 20 387 366 75 30 chr3 19210517 19210785 -208313793 - L2 LINE L2 -1 3271 2992 297 214 22 0 chr3 19210932 19211021 -208313557 - L2 LINE L2 -303 3010 2920 1311 211 37 9 chr3 19211021 19211344 -208313234 + L1MB7 LINE L1 5844 6175 -9 193 290 250 0 chr3 19211347 19211471 -208313107 - L2 LINE L2 -149 3164 3010 437 212 109 30 chr3 19212214 19212515 -208312063 - L2 LINE L2 -345 2968 2624 307 254 45 27 chr3 19212666 19212776 -208311802 + L2 LINE L2 2910 3021 -251 356 309 89 11 chr3 19213282 19213573 -208311005 - L2 LINE L2 -253 3060 2688 490 78 4 3 chr3 19213574 19213807 -208310771 + AluY SINE Alu 1 297 -15 370 261 75 12 chr3 19214011 19214172 -208310406 - L2 LINE L2 -918 2396 2226 1722 157 4 18 chr3 19214383 19214677 -208309901 + AluJo SINE Alu 15 304 0 276 291 12 0 chr3 19215152 19215238 -208309340 + L2 LINE L2 3188 3274 -39 284 287 139 8 chr3 19215242 19215364 -208309214 - MIR SINE MIR -60 202 65 340 211 167 0 chr3 19216153 19216243 -208308335 + L2 LINE L2 3162 3266 -6 896 245 5 0 chr3 19216283 19216471 -208308107 - MIR SINE MIR -60 202 14 191 245 306 0 chr3 19216491 19216589 -208307989 + L2 LINE L2 3145 3272 0 438 302 33 33 chr3 19217282 19217464 -208307114 - Charlie8 DNA MER1_type -2235 182 1 416 252 10 0 chr3 19218057 19218160 -208306418 + MLT1J LTR MaLR 73 176 -335 305 202 26 75 chr3 19218403 19218523 -208306055 + MLT1J2 LTR MaLR 259 434 -77 533 260 215 10 chr3 19218794 19218994 -208305584 - MIR SINE MIR -20 242 2 549 245 146 26 chr3 19219755 19219947 -208304631 - MIR SINE MIR -14 248 34 298 313 35 14 chr3 19220735 19220879 -208303699 - L1ME LINE L1 -461 5660 5514 1584 177 95 28 chr3 19221848 19222238 -208302340 + MSTA LTR MaLR 13 428 0 1463 86 11 0 chr3 19222257 19222443 -208302135 - AluSg/x SINE Alu -9 301 114 1679 168 102 14 chr3 19222561 19222913 -208301665 + MSTA LTR MaLR 46 428 0 2335 93 10 0 chr3 19222932 19223232 -208301346 - AluSx SINE Alu -9 303 1 211 265 24 36 chr3 19223232 19223315 -208301263 + MIR SINE MIR 181 262 0 2308 89 0 0 chr3 19223359 19223640 -208300938 + AluSc SINE Alu 1 281 -28 1662 186 26 45 chr3 19224604 19224985 -208299593 + MLT1A2 LTR MaLR 1 374 0 220 266 169 0 chr3 19225035 19225212 -208299366 + L2 LINE L2 2851 3057 -215 186 167 93 0 chr3 19225355 19225409 -208299169 + MIR SINE MIR 56 114 -94 254 276 20 10 chr3 19226164 19226262 -208298316 - MIR SINE MIR -124 138 40 457 283 61 0 chr3 19226382 19226562 -208298016 + MIR SINE MIR 47 237 -25 326 318 61 41 chr3 19227309 19227554 -208297024 + L1MC4 LINE L1 7793 8042 0 2168 132 0 3 chr3 19227561 19227864 -208296714 + AluSx SINE Alu 2 303 -9 698 209 26 13 chr3 19229321 19229474 -208295104 - MER58A DNA MER1_type -27 197 43 877 179 5 47 chr3 19229477 19229667 -208294911 + L1MB3 LINE L1 4810 4991 -1155 1142 100 13 7 chr3 19229669 19229819 -208294759 + AluSq/x SINE Alu 1 151 -162 189 0 0 0 chr3 19229842 19229863 -208294715 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1685 200 44 61 chr3 19229874 19230355 -208294223 + L1MB3 LINE L1 4980 5468 -703 2319 64 51 3 chr3 19230355 19230650 -208293928 + AluSc SINE Alu 1 309 0 2171 128 0 0 chr3 19230655 19230951 -208293627 + AluSg SINE Alu 1 296 -14 1685 200 44 61 chr3 19230951 19231082 -208293496 + L1MB3 LINE L1 5472 5580 -591 969 164 48 0 chr3 19231108 19231297 -208293281 + L1MA5A LINE L1 6096 6293 -4 2858 167 27 20 chr3 19231311 19231844 -208292734 + L1MB3 LINE L1 5594 6133 -50 2218 106 3 7 chr3 19231844 19232136 -208292442 + AluSc SINE Alu 1 291 -18 2858 167 27 20 chr3 19232136 19232188 -208292390 + L1MB3 LINE L1 6133 6183 0 23 54 0 0 chr3 19232237 19232274 -208292304 + AT_rich Low_complexity Low_complexity 1 37 0 390 206 56 63 chr3 19232277 19232403 -208292175 - MER69 DNA AcHobo -2401 125 1 271 203 0 17 chr3 19232668 19232727 -208291851 - MER58A DNA MER1_type -164 60 3 277 242 15 0 chr3 19233301 19233367 -208291211 - MIR SINE MIR -79 183 117 193 291 25 0 chr3 19233480 19233559 -208291019 + MIR SINE MIR 58 138 -124 555 144 21 0 chr3 19234253 19234350 -208290228 + MER58A DNA MER1_type 126 224 0 180 111 0 0 chr3 19234500 19234527 -208290051 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 315 300 111 12 chr3 19235080 19235509 -208289069 - L2 LINE L2 -96 3217 2681 220 167 28 28 chr3 19235510 19235582 -208288996 + GA-rich Low_complexity Low_complexity 4 75 0 283 311 19 9 chr3 19235744 19235850 -208288728 - MIR SINE MIR -107 155 49 203 241 81 0 chr3 19236734 19236821 -208287757 - MIR SINE MIR -79 129 35 670 203 0 0 chr3 19236931 19237049 -208287529 + MER58A DNA MER1_type 1 118 0 202 252 96 61 chr3 19237410 19237525 -208287053 + MIR3 SINE MIR 87 205 -3 458 322 192 1 chr3 19237942 19238380 -208286198 + L2 LINE L2 2537 3060 -253 363 283 53 59 chr3 19238579 19238766 -208285812 + MIR SINE MIR 2 187 -75 180 0 0 0 chr3 19239083 19239103 -208285475 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2196 239 55 39 chr3 19239105 19240176 -208284402 - L1MB7 LINE L1 -9 6175 5122 2356 82 0 3 chr3 19240176 19240499 -208284079 + AluSq SINE Alu 1 322 0 2196 239 55 39 chr3 19240499 19241629 -208282949 - L1MB7 LINE L1 -1062 5122 3708 2407 69 0 41 chr3 19241629 19241946 -208282632 + AluSg SINE Alu 1 304 -6 2196 239 55 39 chr3 19241946 19242696 -208281882 - L1MB7 LINE L1 -2476 3708 2971 1689 148 0 29 chr3 19242700 19243010 -208281568 - AluY SINE Alu -10 301 1 914 219 108 8 chr3 19244394 19244654 -208279924 + L1M4 LINE L1 3840 4125 -2021 963 126 0 0 chr3 19244657 19244800 -208279778 - AluSg/x SINE Alu -3 309 167 863 245 93 41 chr3 19244804 19245245 -208279333 + L1M4 LINE L1 4130 4593 -1553 1984 167 11 30 chr3 19245251 19245617 -208278961 + MLT1A1 LTR MaLR 7 365 0 475 284 9 27 chr3 19246055 19246277 -208278301 + L1 LINE L1 3946 4163 -1983 328 319 81 29 chr3 19246493 19246766 -208277812 - L2 LINE L2 -194 3119 2833 305 243 27 0 chr3 19246785 19246859 -208277719 - MIR SINE MIR -108 154 79 349 253 0 11 chr3 19247285 19247376 -208277202 + L1MEd LINE L1 960 1049 -5070 848 252 156 3 chr3 19248193 19248495 -208276083 + MLT1F1 LTR MaLR 103 450 -117 1628 214 74 5 chr3 19249032 19249439 -208275139 + L1MB7 LINE L1 5741 6175 -9 32 67 0 0 chr3 19249849 19249909 -208274669 + AT_rich Low_complexity Low_complexity 1 60 0 183 139 0 0 chr3 19250127 19250163 -208274415 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 401 273 24 8 chr3 19250168 19250294 -208274284 - L1MC4 LINE L1 -1339 6703 6614 399 314 0 19 chr3 19250202 19250307 -208274271 + L1MC4 LINE L1 6614 6716 -1326 * 325 277 87 95 chr3 19250579 19250832 -208273746 - L1 LINE L1 -2814 4034 1655 225 0 0 0 chr3 19251443 19251468 -208273110 + (TA)n Simple_repeat Simple_repeat 2 26 0 1115 203 4 35 chr3 19251468 19251700 -208272878 - AluJo SINE Alu -17 295 71 564 278 137 43 chr3 19254742 19255181 -208269397 - MLT1J LTR MaLR -9 502 23 2310 121 0 0 chr3 19255599 19255912 -208268666 + AluSq SINE Alu 1 313 0 466 295 70 16 chr3 19256082 19256340 -208268238 + L1ME4a LINE L1 5566 5837 -284 402 293 24 69 chr3 19256372 19256504 -208268074 + L2 LINE L2 2334 2451 -863 2332 90 3 7 chr3 19256504 19256823 -208267755 + AluSx SINE Alu 1 312 0 402 293 24 69 chr3 19256823 19256936 -208267642 + L2 LINE L2 2451 2568 -746 218 149 40 27 chr3 19256967 19257041 -208267537 + CT-rich Low_complexity Low_complexity 1 75 0 342 0 0 0 chr3 19258355 19258393 -208266185 + (TA)n Simple_repeat Simple_repeat 2 39 0 3959 228 35 44 chr3 19258393 19259859 -208264719 + L1M4 LINE L1 2485 3945 -2201 2137 126 0 41 chr3 19259859 19260177 -208264401 + AluSx SINE Alu 7 311 -1 3959 228 35 44 chr3 19260177 19260394 -208264184 + L1M4 LINE L1 3945 4163 -1983 346 313 85 31 chr3 19260623 19260882 -208263696 - L2 LINE L2 -208 3105 2833 306 260 36 12 chr3 19260861 19260975 -208263603 - MIR SINE MIR -13 195 79 * 425 234 19 9 chr3 19261401 19261508 -208263070 + L1MEd LINE L1 960 1067 -5052 212 387 75 0 chr3 19261823 19261916 -208262662 + L2 LINE L2 3170 3269 -3 202 296 22 74 chr3 19261907 19262042 -208262536 - MIR SINE MIR -128 134 7 * 1868 133 0 0 chr3 19262620 19262891 -208261687 + AluSx SINE Alu 25 295 -17 406 248 7 97 chr3 19263019 19263065 -208261513 + MER5A DNA MER1_type 32 81 -108 2035 125 7 0 chr3 19263065 19263353 -208261225 + AluSq SINE Alu 1 290 -23 406 248 7 97 chr3 19263353 19263451 -208261127 + MER5A DNA MER1_type 81 163 -26 227 340 21 64 chr3 19263475 19263616 -208260962 + MIR SINE MIR 58 192 -70 806 150 0 29 chr3 19264236 19264376 -208260202 - AluJb SINE Alu -176 136 1 297 277 78 21 chr3 19266518 19266659 -208257919 - L1MC4a LINE L1 -1815 5993 5845 306 73 0 0 chr3 19268405 19268446 -208256132 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 402 39 0 0 chr3 19269453 19269505 -208255073 + (TG)n Simple_repeat Simple_repeat 2 53 0 713 210 193 8 chr3 19269523 19269766 -208254812 + MLT1F LTR MaLR 185 472 -70 1019 248 33 4 chr3 19269817 19270059 -208254519 + LTR42 LTR ERVL 247 495 0 283 291 23 12 chr3 19270059 19270137 -208254441 + MLT1F LTR MaLR 489 567 0 252 356 74 7 chr3 19270184 19270333 -208254245 + L2 LINE L2 3130 3288 -25 433 293 24 43 chr3 19270369 19270533 -208254045 + MIR SINE MIR 23 183 -79 223 244 11 11 chr3 19270923 19271013 -208253565 + (TG)n Simple_repeat Simple_repeat 1 90 0 525 292 188 48 chr3 19271126 19271503 -208253075 - LTR16C LTR ERVL 0 491 62 286 267 160 15 chr3 19272005 19272136 -208252442 + LTR67 LTR ERVL 408 557 0 315 283 169 5 chr3 19272182 19272366 -208252212 - L1ME4a LINE L1 -52 6069 5856 694 324 82 27 chr3 19272411 19272927 -208251651 + L2 LINE L2 2713 3249 -64 227 139 0 0 chr3 19272964 19273000 -208251578 + L1M4 LINE L1 4963 4998 -1148 2318 99 78 20 chr3 19273001 19273345 -208251233 + THE1B LTR MaLR 1 364 0 8804 79 15 1 chr3 19273345 19274515 -208250063 + THE1B-int LTR MaLR 1 1187 -393 2245 82 6 29 chr3 19274734 19275049 -208249529 + AluSg SINE Alu 2 309 -1 822 227 184 3 chr3 19275052 19275334 -208249244 - L1MEc LINE L1 -3267 2948 2616 1359 137 116 65 chr3 19275345 19275622 -208248956 + AluJb SINE Alu 13 303 -9 956 77 0 26 chr3 19275628 19275784 -208248794 + (GGAA)n Simple_repeat Simple_repeat 3 154 0 740 215 98 55 chr3 19275784 19276184 -208248394 - L1MEc LINE L1 -3598 2617 2224 1931 153 10 0 chr3 19276184 19276491 -208248087 - AluSx SINE Alu -2 310 1 740 215 98 55 chr3 19276491 19276602 -208247976 - L1MEc LINE L1 -3991 2224 2119 2459 272 56 16 chr3 19276631 19277466 -208247112 - L1MEc LINE L1 -5442 954 86 300 327 92 33 chr3 19277939 19278092 -208246486 + L3 LINE CR1 1407 1568 -9 290 308 0 0 chr3 19279781 19279872 -208244706 + MIR SINE MIR 80 170 -92 360 339 65 14 chr3 19280932 19281283 -208243295 + L1ME2 LINE L1 4912 5280 -866 755 345 76 25 chr3 19281316 19281566 -208243012 + L1ME2 LINE L1 5330 5566 -598 1863 134 7 3 chr3 19281566 19281856 -208242722 + AluJo SINE Alu 1 291 -21 755 345 76 25 chr3 19281856 19282194 -208242384 + L1ME2 LINE L1 5566 5948 -216 1002 146 18 12 chr3 19282391 19282562 -208242016 + FAM SINE Alu 4 175 0 209 204 61 0 chr3 19282770 19282819 -208241759 + MIR SINE MIR 98 149 -59 282 365 79 17 chr3 19284814 19285055 -208239523 + L2 LINE L2 2985 3240 -32 230 238 20 99 chr3 19285503 19285604 -208238974 - MLT1I LTR MaLR -120 289 197 191 326 11 100 chr3 19285818 19286008 -208238570 - L2 LINE L2 -599 2715 2543 218 340 20 27 chr3 19286907 19287057 -208237521 - MIR3 SINE MIR -13 195 47 1158 249 78 0 chr3 19287285 19287578 -208237000 + MER58B DNA MER1_type 1 316 -25 676 296 135 11 chr3 19287580 19287951 -208236627 + L2 LINE L2 2895 3311 -2 946 265 100 41 chr3 19288265 19288654 -208235924 + MLT1K LTR MaLR 146 557 -31 728 275 106 44 chr3 19289875 19290330 -208234248 - MLT1L LTR MaLR 0 615 133 26 0 0 0 chr3 19290503 19290529 -208234049 + GC_rich Low_complexity Low_complexity 1 26 0 1787 160 16 3 chr3 19290693 19290999 -208233579 - AluJo SINE Alu -2 310 1 1753 150 20 14 chr3 19291270 19291564 -208233014 + AluSx SINE Alu 1 296 -16 189 211 96 0 chr3 19291740 19291792 -208232786 + MIR SINE MIR 118 174 -88 4513 119 12 16 chr3 19291888 19292353 -208232225 - L1PB3 LINE L1 -6 6148 5685 2169 106 0 0 chr3 19292353 19292645 -208231933 - AluSx SINE Alu -20 292 1 4513 119 12 16 chr3 19292645 19292865 -208231713 - L1PB3 LINE L1 -469 5685 5466 254 260 27 0 chr3 19292865 19292938 -208231640 + MIR SINE MIR 91 165 -97 250 306 33 92 chr3 19293189 19293460 -208231118 + MER102a DNA MER1_type 67 321 -9 210 257 147 0 chr3 19293913 19294022 -208230556 - MIR SINE MIR -83 179 55 188 277 43 11 chr3 19294189 19294283 -208230295 - L2 LINE L2 -251 3021 2925 639 280 134 41 chr3 19295540 19295979 -208228599 - MLT1J LTR MaLR -9 502 23 2194 118 0 0 chr3 19296397 19296710 -208227868 + AluSq SINE Alu 1 313 0 535 277 64 20 chr3 19296880 19297082 -208227496 + L1ME LINE L1 5566 5776 -345 420 293 24 69 chr3 19297170 19297302 -208227276 + L2 LINE L2 2334 2451 -863 2157 97 3 7 chr3 19297302 19297621 -208226957 + AluSx SINE Alu 1 312 0 420 293 24 69 chr3 19297621 19297734 -208226844 + L2 LINE L2 2451 2568 -746 228 198 22 33 chr3 19297748 19297839 -208226739 + C-rich Low_complexity Low_complexity 3 92 0 681 101 0 0 chr3 19299145 19299244 -208225334 + (TA)n Simple_repeat Simple_repeat 2 100 0 4360 253 50 33 chr3 19299244 19300684 -208223894 + L1M4 LINE L1 2487 3960 -2186 2006 126 0 41 chr3 19300684 19301002 -208223576 + AluSx SINE Alu 7 311 -1 4360 253 50 33 chr3 19301002 19301240 -208223338 + L1M4 LINE L1 3960 4193 -1953 346 313 85 31 chr3 19301448 19301707 -208222871 - L2 LINE L2 -208 3105 2833 306 260 36 12 chr3 19301686 19301800 -208222778 - MIR SINE MIR -13 195 79 * 425 234 19 9 chr3 19302226 19302333 -208222245 + L1MEd LINE L1 960 1067 -5052 212 387 75 0 chr3 19302648 19302741 -208221837 + L2 LINE L2 3170 3269 -3 202 296 22 74 chr3 19302732 19302867 -208221711 - MIR SINE MIR -128 134 7 * 1868 133 0 0 chr3 19303445 19303716 -208220862 + AluSx SINE Alu 25 295 -17 379 247 7 103 chr3 19303844 19303890 -208220688 + MER5A DNA MER1_type 32 81 -108 2035 125 7 0 chr3 19303890 19304178 -208220400 + AluSq SINE Alu 1 290 -23 379 247 7 103 chr3 19304178 19304277 -208220301 + MER5A DNA MER1_type 81 163 -26 227 340 21 64 chr3 19304301 19304442 -208220136 + MIR SINE MIR 58 192 -70 834 135 0 35 chr3 19305062 19305203 -208219375 - AluJo SINE Alu -176 136 1 297 277 78 21 chr3 19307345 19307486 -208217092 - L1MC4a LINE L1 -1815 5993 5845 306 73 0 0 chr3 19309232 19309273 -208215305 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 402 39 0 0 chr3 19310280 19310332 -208214246 + (TG)n Simple_repeat Simple_repeat 2 53 0 713 210 193 8 chr3 19310350 19310593 -208213985 + MLT1F LTR MaLR 185 472 -70 1019 248 33 4 chr3 19310644 19310886 -208213692 + LTR42 LTR ERVL 247 495 0 283 291 23 12 chr3 19310886 19310964 -208213614 + MLT1F LTR MaLR 489 567 0 276 356 74 7 chr3 19311011 19311160 -208213418 + L2 LINE L2 3130 3288 -25 463 292 41 41 chr3 19311196 19311367 -208213211 + MIR SINE MIR 23 193 -69 223 244 11 11 chr3 19311750 19311840 -208212738 + (TG)n Simple_repeat Simple_repeat 1 90 0 411 292 188 48 chr3 19311953 19312330 -208212248 - LTR16C LTR ERVL 0 491 62 248 298 145 0 chr3 19312832 19312963 -208211615 + LTR67 LTR ERVL 408 557 0 281 283 169 5 chr3 19313009 19313193 -208211385 - L1ME4a LINE L1 -52 6069 5856 740 330 78 23 chr3 19313238 19313754 -208210824 + L2 LINE L2 2713 3249 -64 2310 99 78 20 chr3 19313828 19314172 -208210406 + THE1B LTR MaLR 1 364 0 8251 79 15 1 chr3 19314172 19315342 -208209236 + THE1B-int LTR MaLR 1 1187 -393 2224 94 3 7 chr3 19315561 19315870 -208208708 + AluSg SINE Alu 2 309 -1 251 239 60 30 chr3 19315953 19316020 -208208558 - MIR SINE MIR -58 150 82 195 362 13 80 chr3 19317094 19317318 -208207260 - L2 LINE L2 -467 2847 2639 316 364 111 10 chr3 19317321 19317519 -208207059 - MIR SINE MIR -4 258 41 244 367 37 0 chr3 19317551 19317660 -208206918 + MIR SINE MIR 64 176 -86 255 245 60 26 chr3 19318439 19318515 -208206063 + MIR3 SINE MIR 78 159 -49 702 224 49 22 chr3 19318517 19318700 -208205878 + MER5A DNA MER1_type 2 189 0 572 284 162 8 chr3 19319083 19319792 -208204786 + L2 LINE L2 2234 3059 -254 409 233 107 13 chr3 19319929 19320084 -208204494 + MIR SINE MIR 59 245 -17 345 307 30 0 chr3 19320252 19320353 -208204225 + MLT1F1 LTR MaLR 6 109 -458 1159 225 31 64 chr3 19320353 19320713 -208203865 - MLT1A1 LTR MaLR 0 365 18 861 223 217 57 chr3 19320723 19321110 -208203468 + MLT1F1 LTR MaLR 100 541 -1 1525 234 71 5 chr3 19321545 19321968 -208202610 + L1MB7 LINE L1 5725 6175 -9 485 313 65 9 chr3 19322921 19323138 -208201440 - L2 LINE L2 -1 3312 3084 516 259 98 15 chr3 19323150 19323355 -208201223 - MLT1A1 LTR MaLR 0 365 144 490 267 53 24 chr3 19323448 19323543 -208201035 + L1MEc LINE L1 1298 1389 -5218 2491 169 40 5 chr3 19323543 19323988 -208200590 + LOR1b LTR ERV1 1 461 0 490 267 53 24 chr3 19323988 19324218 -208200360 + L1MEc LINE L1 1389 1833 -4774 339 250 36 0 chr3 19324228 19324312 -208200266 + L1MEc LINE L1 2673 2759 -3667 4254 113 117 78 chr3 19324312 19325713 -208198865 + pTR5 LTR ERV1 66 2438 0 2261 68 0 0 chr3 19325728 19326040 -208198538 + AluY SINE Alu 1 312 0 552 212 101 0 chr3 19326040 19326229 -208198349 + L1MEc LINE L1 2758 2965 -3461 280 306 234 8 chr3 19326252 19326376 -208198202 - L2 LINE L2 0 3272 3121 536 267 24 48 chr3 19326595 19326760 -208197818 + L2 LINE L2 3153 3313 0 341 330 18 37 chr3 19326914 19327132 -208197446 + MLT1K LTR MaLR 3 216 -372 361 294 20 20 chr3 19327179 19327332 -208197246 + (TGGA)n Simple_repeat Simple_repeat 4 156 0 271 172 16 0 chr3 19327340 19327404 -208197174 + L1MEc LINE L1 2983 3047 -3379 2900 251 67 72 chr3 19327406 19327621 -208196957 + L1MEc LINE L1 3137 3352 -3074 2130 113 0 25 chr3 19327621 19327906 -208196672 + AluY SINE Alu 1 279 -32 354 45 0 0 chr3 19327906 19327950 -208196628 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2130 113 0 25 chr3 19327950 19327983 -208196595 + AluY SINE Alu 279 311 0 2900 251 67 72 chr3 19327983 19328055 -208196523 + L1MEc LINE L1 3352 3423 -3003 1785 127 58 0 chr3 19328055 19328330 -208196248 + AluSg SINE Alu 16 306 -4 2900 251 67 72 chr3 19328330 19328392 -208196186 + L1MEc LINE L1 3423 3484 -2942 291 122 0 0 chr3 19328392 19328441 -208196137 - MER58 DNA MER1_type 0 2420 2372 2900 251 67 72 chr3 19328441 19329572 -208195006 + L1MEc LINE L1 3484 4658 -1768 213 326 143 0 chr3 19329876 19329974 -208194604 + MIR SINE MIR 41 152 -56 288 331 201 14 chr3 19329980 19330273 -208194305 + L2 LINE L2 2965 3312 -1 207 264 139 0 chr3 19330405 19330477 -208194101 - MIR SINE MIR -75 133 52 303 284 98 0 chr3 19330926 19331028 -208193550 + L2 LINE L2 3145 3256 -16 342 162 20 10 chr3 19331699 19331798 -208192780 + CT-rich Low_complexity Low_complexity 2 101 0 270 250 15 0 chr3 19331817 19331885 -208192693 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 314 291 227 0 chr3 19331895 19332005 -208192573 - L2 LINE L2 -13 3259 3125 579 251 23 46 chr3 19332221 19332396 -208192182 + L2 LINE L2 3141 3311 -2 1714 188 28 6 chr3 19332420 19332772 -208191806 - MLT1A1 LTR MaLR 0 365 6 975 218 9 18 chr3 19333159 19333384 -208191194 - MIR SINE MIR -30 232 10 405 296 206 0 chr3 19333397 19333640 -208190938 + MLT1K LTR MaLR 230 522 -66 360 174 174 9 chr3 19334450 19334565 -208190013 + L2 LINE L2 2921 3054 -259 1520 153 80 22 chr3 19335040 19335314 -208189264 + AluJo SINE Alu 13 302 -10 234 0 0 0 chr3 19336216 19336242 -208188336 + (T)n Simple_repeat Simple_repeat 1 26 0 811 124 0 0 chr3 19336242 19336355 -208188223 - AluSq/x SINE Alu -180 133 21 779 237 49 95 chr3 19336694 19336792 -208187786 + MLT1C LTR MaLR 2 103 -364 2571 48 0 10 chr3 19336792 19337106 -208187472 + AluY SINE Alu 1 311 0 779 237 49 95 chr3 19337106 19337458 -208187120 + MLT1C LTR MaLR 103 431 -36 1296 206 31 34 chr3 19338614 19338969 -208185609 - MLT1B LTR MaLR -29 361 8 237 293 78 37 chr3 19338991 19339182 -208185396 + LTR33 LTR ERVL 161 359 -162 1670 241 40 2 chr3 19339534 19340230 -208184348 + L1MD2 LINE L1 4929 5648 -711 863 216 0 5 chr3 19340232 19340426 -208184152 + L1MD2 LINE L1 5769 5961 -398 1381 195 66 18 chr3 19340432 19340765 -208183813 + L1MD2 LINE L1 6010 6358 -1 760 254 117 0 chr3 19340841 19341097 -208183481 + MLT1G3 LTR MaLR 143 428 -102 480 111 0 0 chr3 19341457 19341529 -208183049 + (TG)n Simple_repeat Simple_repeat 1 72 0 187 306 69 0 chr3 19342474 19342546 -208182032 - MIR SINE MIR -99 163 87 213 264 18 117 chr3 19343330 19343493 -208181085 + MIR SINE MIR 3 149 -113 585 98 33 54 chr3 19344611 19344795 -208179783 + (CA)n Simple_repeat Simple_repeat 1 180 0 515 148 40 17 chr3 19344842 19345018 -208179560 + (CA)n Simple_repeat Simple_repeat 1 180 0 336 298 128 21 chr3 19345517 19345658 -208178920 + MIR SINE MIR 66 221 -41 270 352 61 37 chr3 19345785 19345985 -208178593 - MIR SINE MIR -41 221 14 1759 153 35 0 chr3 19346068 19346235 -208178343 - AluJo SINE Alu -12 300 117 207 0 0 0 chr3 19346235 19346258 -208178320 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1759 153 35 0 chr3 19346258 19346378 -208178200 - AluJo SINE Alu -195 117 3 3835 176 51 3 chr3 19346845 19347548 -208177030 + L1MB3 LINE L1 5446 6182 -1 291 343 20 0 chr3 19347622 19347721 -208176857 - MIR SINE MIR -32 230 130 428 263 66 20 chr3 19347724 19347876 -208176702 + LTR33 LTR ERVL 49 207 -314 455 153 10 0 chr3 19347898 19347996 -208176582 + (CA)n Simple_repeat Simple_repeat 2 100 0 335 252 46 23 chr3 19348008 19348139 -208176439 + LTR33 LTR ERVL 338 471 -50 180 237 0 0 chr3 19348570 19348608 -208175970 - L2 LINE L2 -17 3255 3218 2304 84 16 0 chr3 19349447 19349831 -208174747 - AluSq SINE Alu 0 389 1 293 250 7 0 chr3 19350189 19350329 -208174249 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 643 188 11 0 chr3 19350350 19350526 -208174052 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 685 171 11 0 chr3 19350537 19350712 -208173866 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 669 194 5 0 chr3 19350724 19350947 -208173631 + (TCCA)n Simple_repeat Simple_repeat 1 224 0 510 184 19 0 chr3 19350948 19351051 -208173527 + Tigger7 DNA MER2_type 2380 2484 -7 700 221 0 0 chr3 19351062 19351225 -208173353 + L1ME LINE L1 5336 5498 -664 255 314 23 0 chr3 19351248 19351334 -208173244 + L1ME3 LINE L1 6073 6160 -2 216 302 225 22 chr3 19351862 19352276 -208172302 + L2 LINE L2 2268 2765 -549 388 325 155 20 chr3 19352332 19352726 -208171852 + L2 LINE L2 2867 3313 0 327 244 89 22 chr3 19354710 19354800 -208169778 + MIR SINE MIR 34 129 -79 184 387 32 11 chr3 19354852 19354945 -208169633 + MIR SINE MIR 2 96 -166 385 253 61 0 chr3 19355764 19355863 -208168715 + L2 LINE L2 3209 3313 0 188 219 0 24 chr3 19355865 19355906 -208168672 - L2 LINE L2 -94 3219 3180 274 344 49 0 chr3 19355929 19356051 -208168527 - L3 LINE CR1 -86 1491 1364 213 337 74 16 chr3 19356410 19356600 -208167978 + L2 LINE L2 2868 3068 -204 531 215 40 40 chr3 19356745 19356894 -208167684 + MIR SINE MIR 31 179 -83 3085 206 45 37 chr3 19356901 19358273 -208166305 - L1MB8 LINE L1 -169 6009 4629 180 404 10 0 chr3 19358279 19358378 -208166200 - L3 LINE CR1 -730 847 748 347 242 297 12 chr3 19361147 19361490 -208163088 - LTR33 LTR ERVL -66 455 15 859 269 80 12 chr3 19361888 19362226 -208162352 - L1MB7 LINE L1 -64 6120 5760 403 228 98 53 chr3 19362348 19362594 -208161984 + MER113 DNA MER1_type? 6 262 -259 196 260 0 20 chr3 19362789 19362839 -208161739 + MIR3 SINE MIR 160 208 0 250 273 78 0 chr3 19363029 19363106 -208161472 + L2 LINE L2 3188 3270 -2 398 306 148 29 chr3 19363651 19363929 -208160649 + L2 LINE L2 2456 2766 -548 265 179 170 18 chr3 19364885 19364997 -208159581 - MER102a DNA MER1_type -6 324 196 408 174 35 0 chr3 19366741 19366827 -208157751 - L1MB4 LINE L1 -1 6179 6091 2406 168 46 17 chr3 19366827 19367361 -208157217 - L1MB3 LINE L1 -133 6050 5498 186 335 125 13 chr3 19367995 19368147 -208156431 - L3 LINE CR1 -1 1576 1408 433 361 66 0 chr3 19368665 19368892 -208155686 + MIR SINE MIR 2 243 -19 217 336 96 28 chr3 19370279 19370529 -208154049 - L2 LINE L2 -2 3311 3045 2206 80 10 3 chr3 19370602 19370901 -208153677 - AluSx SINE Alu -11 301 1 722 241 23 11 chr3 19370926 19371100 -208153478 + MIR SINE MIR 1 176 -86 460 228 30 0 chr3 19371098 19371199 -208153379 - L2 LINE L2 -1 3312 3209 * 778 124 0 9 chr3 19371214 19371327 -208153251 + FLAM_C SINE Alu 24 135 -8 648 124 33 50 chr3 19371713 19371815 -208152763 + FRAM SINE Alu 57 158 -154 2379 87 3 0 chr3 19371815 19372125 -208152453 + AluSx SINE Alu 1 311 -1 648 124 33 50 chr3 19372125 19372143 -208152435 + FRAM SINE Alu 158 175 -1 434 274 42 10 chr3 19372145 19372345 -208152233 - L2 LINE L2 -86 3227 2712 622 307 117 4 chr3 19373342 19373771 -208150807 + L2 LINE L2 2776 3272 0 297 304 76 35 chr3 19374379 19374550 -208150028 + L2 LINE L2 2889 3066 -247 * 721 237 24 26 chr3 19374522 19374706 -208149872 + MIR SINE MIR 51 235 -27 8201 115 35 11 chr3 19374718 19375984 -208148594 - HSMAR2 DNA Mariner -1 1301 5 205 277 0 0 chr3 19375984 19376031 -208148547 + (TG)n Simple_repeat Simple_repeat 1 47 0 1057 200 177 16 chr3 19376035 19376345 -208148233 - MLT1A2 LTR MaLR 0 374 15 786 313 47 33 chr3 19376483 19376911 -208147667 + MER20B DNA MER1_type 311 744 -39 1765 201 60 0 chr3 19377428 19377879 -208146699 + L1MB3 LINE L1 5706 6183 0 322 344 33 13 chr3 19377879 19378030 -208146548 - MER5A DNA MER1_type -28 161 8 430 299 113 25 chr3 19378491 19378695 -208145883 + MIR SINE MIR 20 241 -21 416 265 0 24 chr3 19378910 19379080 -208145498 + (TG)n Simple_repeat Simple_repeat 1 166 0 181 247 137 0 chr3 19382379 19382452 -208142126 + MIR SINE MIR 63 145 -63 395 218 126 23 chr3 19383027 19383201 -208141377 + L2 LINE L2 2873 3064 -249 1098 253 29 9 chr3 19384408 19384794 -208139784 + L1MB3 LINE L1 5810 6184 0 1649 161 53 27 chr3 19384809 19385108 -208139470 + AluJo SINE Alu 1 307 -5 237 32 0 0 chr3 19385841 19385872 -208138706 - MER103 DNA DNA -83 83 53 419 269 31 0 chr3 19386592 19386722 -208137856 + L1MB3 LINE L1 6041 6174 -9 186 305 17 0 chr3 19387150 19387209 -208137369 - MIR SINE MIR -87 121 62 333 254 82 33 chr3 19387313 19387435 -208137143 + L1ME3A LINE L1 6033 6160 -10 273 269 51 0 chr3 19387555 19387633 -208136945 + GA-rich Low_complexity Low_complexity 4 85 0 274 300 0 73 chr3 19388707 19388817 -208135761 - L2 LINE L2 -1 3312 3211 845 150 0 0 chr3 19388912 19389039 -208135539 - AluSg/x SINE Alu -19 293 167 1345 240 77 52 chr3 19389732 19390197 -208134381 - MLT1H LTR MaLR -16 533 52 2031 130 3 3 chr3 19390197 19390498 -208134080 + AluSx SINE Alu 1 301 -11 1345 240 77 52 chr3 19390498 19390552 -208134026 - MLT1H LTR MaLR -497 52 1 1630 249 23 0 chr3 19390819 19391252 -208133326 + L1MB3 LINE L1 5739 6181 -2 286 370 66 11 chr3 19392264 19392445 -208132133 - L3 LINE CR1 -730 847 657 197 351 26 0 chr3 19393339 19393416 -208131162 + MIR SINE MIR 148 226 -36 446 177 0 0 chr3 19393455 19393534 -208131044 - MIR SINE MIR -105 157 79 249 125 0 0 chr3 19393534 19393574 -208131004 - MIR SINE MIR -144 118 79 278 125 0 0 chr3 19393574 19393614 -208130964 - MIR SINE MIR -144 118 79 454 194 48 0 chr3 19393614 19393717 -208130861 - MIR SINE MIR -144 118 11 2443 68 0 3 chr3 19393875 19394183 -208130395 - AluY SINE Alu -4 307 1 456 194 93 37 chr3 19394315 19394423 -208130155 + MIR SINE MIR 36 149 -59 287 321 21 1 chr3 19394579 19394684 -208129894 + MIR SINE MIR 41 147 -61 1775 105 46 56 chr3 19395127 19395313 -208129265 - AluSx SINE Alu -9 303 120 330 45 0 0 chr3 19395313 19395357 -208129221 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 1775 105 46 56 chr3 19395357 19395476 -208129102 - AluSx SINE Alu -192 120 1 1002 286 135 12 chr3 19395477 19396174 -208128404 + L2 LINE L2 2519 3313 0 4217 174 11 28 chr3 19396731 19397430 -208127148 - L1MB3 LINE L1 -2 6181 5495 2381 84 0 0 chr3 19397430 19397741 -208126837 - AluY SINE Alu 0 311 1 4217 174 11 28 chr3 19397741 19397829 -208126749 - L1MB3 LINE L1 -688 5495 5407 726 235 5 51 chr3 19397850 19398046 -208126532 - MIR SINE MIR -46 216 30 217 286 102 0 chr3 19399519 19399617 -208124961 - MIR SINE MIR -114 148 41 1006 155 0 0 chr3 19400326 19400481 -208124097 - FRAM SINE Alu -13 163 9 636 234 119 35 chr3 19400576 19400777 -208123801 + MER20 DNA MER1_type 1 218 -1 266 102 44 257 chr3 19400864 19401070 -208123508 + L1MB4 LINE L1 6019 6180 0 198 302 47 35 chr3 19401174 19401260 -208123318 - MIR SINE MIR -87 175 89 547 270 37 11 chr3 19401647 19401835 -208122743 + MIR SINE MIR 45 237 -25 2109 182 266 16 chr3 19402430 19403062 -208121516 + L1MC1 LINE L1 5544 6333 0 1762 166 13 19 chr3 19403108 19403422 -208121156 + AluJo SINE Alu 1 312 0 346 343 120 0 chr3 19403599 19403882 -208120696 + L2 LINE L2 2492 2808 -506 266 265 20 41 chr3 19404810 19404908 -208119670 + GA-rich Low_complexity Low_complexity 5 100 0 197 261 54 33 chr3 19405364 19405456 -208119122 - L2 LINE L2 -27 3245 3152 568 266 85 25 chr3 19405881 19406241 -208118337 + LTR16A LTR ERVL 59 457 0 241 271 57 0 chr3 19407126 19407196 -208117382 + MIR SINE MIR 100 173 -89 2265 183 55 36 chr3 19407236 19407701 -208116877 + L1MB3 LINE L1 5610 6090 -93 1546 165 4 8 chr3 19407701 19407984 -208116594 + AluSx SINE Alu 29 310 0 2265 183 55 36 chr3 19407984 19408079 -208116499 + L1MB3 LINE L1 6090 6182 -1 1953 90 19 4 chr3 19408161 19408428 -208116150 - AluSg SINE Alu -19 291 21 225 274 41 0 chr3 19408557 19408630 -208115948 + MIR SINE MIR 77 152 -110 554 198 6 0 chr3 19409509 19409686 -208114892 + CT-rich Low_complexity Low_complexity 1 178 0 996 307 30 30 chr3 19410246 19410679 -208113899 - MLT1J LTR MaLR -78 433 1 220 204 0 0 chr3 19410819 19410863 -208113715 - MIR SINE MIR -96 166 123 2132 162 16 14 chr3 19411713 19412077 -208112501 + MLT1A1 LTR MaLR 1 365 0 2519 61 0 0 chr3 19412315 19412626 -208111952 - AluY SINE Alu 0 311 1 498 288 8 0 chr3 19412922 19413047 -208111531 + MIR SINE MIR 20 145 -117 268 276 29 48 chr3 19413349 19413454 -208111124 - Charlie7 DNA MER1_type -2505 107 5 196 247 21 65 chr3 19413703 19413796 -208110782 - L2 LINE L2 -243 3029 2941 1235 241 33 5 chr3 19414501 19415002 -208109576 + MLT1H1 LTR MaLR 1 547 -8 199 311 107 0 chr3 19415041 19415144 -208109434 - L2 LINE L2 0 3313 3200 2179 210 33 42 chr3 19415355 19415805 -208108773 + L1M4c LINE L1 2214 2667 -3715 2360 88 0 0 chr3 19415805 19416111 -208108467 + AluY SINE Alu 1 306 -5 2179 210 33 42 chr3 19416111 19416221 -208108357 + L1M4c LINE L1 2667 2777 -3605 1748 190 3 0 chr3 19416221 19416532 -208108046 + AluJo SINE Alu 1 312 0 2179 210 33 42 chr3 19416532 19416828 -208107750 + L1M4c LINE L1 2777 3056 -3326 268 288 0 25 chr3 19416920 19417000 -208107578 + MIR SINE MIR 116 193 -69 562 260 34 64 chr3 19417743 19417947 -208106631 - MIR SINE MIR -57 205 8 576 252 77 42 chr3 19418356 19418666 -208105912 + L2 LINE L2 2615 2935 -379 319 279 0 47 chr3 19418658 19418787 -208105791 - MIR SINE MIR -81 181 59 * 598 308 76 13 chr3 19419691 19419928 -208104650 + MIR SINE MIR 2 253 -9 280 218 188 0 chr3 19420244 19420345 -208104233 + L2 LINE L2 2939 3058 -214 2565 61 0 0 chr3 19420788 19421098 -208103480 - AluY SINE Alu -1 310 1 195 320 32 40 chr3 19421205 19421330 -208103248 - MIR SINE MIR -116 146 23 252 59 0 0 chr3 19421817 19421851 -208102727 + (A)n Simple_repeat Simple_repeat 1 34 0 2155 96 0 3 chr3 19423243 19423525 -208101053 + AluSx SINE Alu 1 281 -31 575 302 23 18 chr3 19423533 19423781 -208100797 + MIR SINE MIR 3 250 -12 252 272 86 0 chr3 19423907 19423988 -208100590 - L2 LINE L2 -1 3312 3225 366 276 89 23 chr3 19424705 19424937 -208099641 - MIR SINE MIR 0 262 13 346 264 203 14 chr3 19425335 19425483 -208099095 + MER5A DNA MER1_type 9 184 -5 41 48 0 0 chr3 19427456 19427518 -208097060 + GC_rich Low_complexity Low_complexity 1 62 0 353 300 0 32 chr3 19427581 19427784 -208096794 + C-rich Low_complexity Low_complexity 1 196 0 346 343 120 0 chr3 19428095 19428378 -208096200 - L2 LINE L2 -506 2808 2492 1762 166 13 19 chr3 19428555 19428869 -208095709 - AluJo SINE Alu 0 312 1 2318 171 264 14 chr3 19428915 19429547 -208095031 - L1MC1 LINE L1 0 6333 5544 547 270 37 11 chr3 19430142 19430330 -208094248 - MIR SINE MIR -25 237 45 198 302 47 35 chr3 19430717 19430803 -208093775 + MIR SINE MIR 89 175 -87 266 102 44 257 chr3 19430907 19431113 -208093465 - L1MB4 LINE L1 0 6180 6019 636 234 119 35 chr3 19431200 19431401 -208093177 - MER20 DNA MER1_type -1 218 1 1006 155 0 0 chr3 19431496 19431651 -208092927 + FRAM SINE Alu 9 163 -13 229 283 91 0 chr3 19432360 19432459 -208092119 + MIR SINE MIR 41 148 -114 726 235 5 51 chr3 19433932 19434128 -208090450 + MIR SINE MIR 30 216 -46 4174 176 11 29 chr3 19434149 19434237 -208090341 + L1MB3 LINE L1 5407 5495 -688 2381 84 0 0 chr3 19434237 19434548 -208090030 + AluY SINE Alu 1 311 0 4174 176 11 29 chr3 19434548 19435248 -208089330 + L1MB3 LINE L1 5495 6181 -2 1002 286 135 12 chr3 19435805 19436502 -208088076 - L2 LINE L2 0 3313 2519 1791 101 45 62 chr3 19436503 19436622 -208087956 + AluSx SINE Alu 1 120 -192 396 0 0 0 chr3 19436622 19436666 -208087912 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 1791 101 45 62 chr3 19436666 19436854 -208087724 + AluSx SINE Alu 120 303 -9 287 321 21 1 chr3 19437297 19437402 -208087176 - MIR SINE MIR -61 147 41 456 194 93 37 chr3 19437558 19437666 -208086912 - MIR SINE MIR -59 149 36 2443 68 0 3 chr3 19437798 19438106 -208086472 + AluY SINE Alu 1 307 -4 454 194 48 0 chr3 19438264 19438367 -208086211 + MIR SINE MIR 11 118 -144 278 125 0 0 chr3 19438367 19438407 -208086171 + MIR SINE MIR 79 118 -144 249 125 0 0 chr3 19438407 19438447 -208086131 + MIR SINE MIR 79 118 -144 446 177 0 0 chr3 19438447 19438526 -208086052 + MIR SINE MIR 79 157 -105 197 351 26 0 chr3 19438565 19438642 -208085936 - MIR SINE MIR -36 226 148 286 370 66 11 chr3 19439536 19439717 -208084861 + L3 LINE CR1 657 847 -730 1647 251 21 0 chr3 19440729 19441163 -208083415 - L1MB3 LINE L1 -2 6181 5739 1345 240 77 52 chr3 19441430 19441484 -208083094 + MLT1H LTR MaLR 1 52 -497 2031 130 3 3 chr3 19441484 19441785 -208082793 - AluSx SINE Alu -11 301 1 1345 240 77 52 chr3 19441785 19442250 -208082328 + MLT1H LTR MaLR 52 533 -16 845 150 0 0 chr3 19442943 19443070 -208081508 + AluSg/x SINE Alu 167 293 -19 274 300 0 73 chr3 19443165 19443275 -208081303 + L2 LINE L2 3211 3312 -1 215 292 42 58 chr3 19443341 19443461 -208081117 - MIR SINE MIR -62 146 29 273 269 51 0 chr3 19444349 19444427 -208080151 + CT-rich Low_complexity Low_complexity 4 85 0 333 254 82 33 chr3 19444547 19444669 -208079909 - L1ME3A LINE L1 -10 6160 6033 186 305 17 0 chr3 19444773 19444832 -208079746 + MIR SINE MIR 62 121 -87 419 269 31 0 chr3 19445260 19445390 -208079188 - L1MB3 LINE L1 -9 6174 6041 1774 76 0 13 chr3 19445568 19445805 -208078773 + AluY SINE Alu 74 307 -4 1112 230 20 69 chr3 19445805 19445916 -208078662 + L1M4 LINE L1 2433 2548 -3598 1764 186 3 0 chr3 19445916 19446227 -208078351 + AluJo SINE Alu 1 312 0 1112 230 20 69 chr3 19446227 19446523 -208078055 + L1M4 LINE L1 2548 2820 -3326 268 288 0 25 chr3 19446615 19446695 -208077883 + MIR SINE MIR 116 193 -69 562 260 34 64 chr3 19447438 19447642 -208076936 - MIR SINE MIR -57 205 8 529 261 77 42 chr3 19448051 19448361 -208076217 + L2 LINE L2 2615 2935 -379 319 279 0 47 chr3 19448353 19448482 -208076096 - MIR SINE MIR -81 181 59 * 598 308 76 13 chr3 19449386 19449623 -208074955 + MIR SINE MIR 2 253 -9 280 218 188 0 chr3 19449939 19450040 -208074538 + L2 LINE L2 2939 3058 -214 2167 154 0 3 chr3 19450480 19450792 -208073786 - AluSx SINE Alu -1 311 1 270 0 0 0 chr3 19452193 19452223 -208072355 + (T)n Simple_repeat Simple_repeat 1 30 0 198 302 32 48 chr3 19452710 19452836 -208071742 + MIR SINE MIR 23 146 -116 1630 61 0 0 chr3 19452943 19453139 -208071439 + AluY SINE Alu 1 196 -115 851 173 98 67 chr3 19453261 19453419 -208071159 + L1MB3 LINE L1 5920 6091 -92 1546 165 4 8 chr3 19453419 19453702 -208070876 + AluSx SINE Alu 29 310 0 851 173 98 67 chr3 19453702 19453797 -208070781 + L1MB3 LINE L1 6091 6182 -1 1953 90 19 4 chr3 19453879 19454146 -208070432 - AluSg SINE Alu -19 291 21 225 274 41 0 chr3 19454275 19454348 -208070230 + MIR SINE MIR 77 152 -110 533 203 6 0 chr3 19455227 19455404 -208069174 + CT-rich Low_complexity Low_complexity 1 178 0 987 316 28 28 chr3 19455963 19456396 -208068182 - MLT1J LTR MaLR -78 433 1 220 204 0 0 chr3 19456536 19456580 -208067998 - MIR SINE MIR -96 166 123 2155 159 16 14 chr3 19457429 19457793 -208066785 + MLT1A1 LTR MaLR 1 365 0 2501 64 0 0 chr3 19458031 19458342 -208066236 - AluY SINE Alu 0 311 1 203 320 32 40 chr3 19458449 19458574 -208066004 - MIR SINE MIR -116 146 23 288 53 0 0 chr3 19459061 19459099 -208065479 + (A)n Simple_repeat Simple_repeat 1 38 0 2155 96 0 3 chr3 19460490 19460772 -208063806 + AluSx SINE Alu 1 281 -31 554 298 22 20 chr3 19460780 19461018 -208063560 + MIR SINE MIR 3 238 -24 252 272 86 0 chr3 19461157 19461238 -208063340 - L2 LINE L2 -1 3312 3225 366 276 89 23 chr3 19461955 19462187 -208062391 - MIR SINE MIR 0 262 13 346 264 203 14 chr3 19462585 19462733 -208061845 + MER5A DNA MER1_type 9 184 -5 22 0 0 0 chr3 19464641 19464663 -208059915 + GC_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr3 19464710 19464757 -208059821 + GC_rich Low_complexity Low_complexity 1 47 0 23 92 0 0 chr3 19464902 19464967 -208059611 + GC_rich Low_complexity Low_complexity 1 65 0 257 130 65 13 chr3 19464978 19465055 -208059523 + (CGG)n Simple_repeat Simple_repeat 2 82 0 * 274 219 26 18 chr3 19465044 19465158 -208059420 + (CCG)n Simple_repeat Simple_repeat 1 115 0 863 104 0 35 chr3 19465481 19465625 -208058953 + FLAM_C SINE Alu 5 143 0 211 75 75 0 chr3 19465975 19466015 -208058563 + (TG)n Simple_repeat Simple_repeat 1 43 0 190 244 24 106 chr3 19467115 19467238 -208057340 - MIR SINE MIR -62 146 37 183 323 0 0 chr3 19468063 19468125 -208056453 + MIR SINE MIR 87 148 -114 480 111 0 0 chr3 19469079 19469151 -208055427 + (CA)n Simple_repeat Simple_repeat 1 72 0 852 238 116 43 chr3 19469437 19469766 -208054812 - MLT1G3 LTR MaLR -24 571 143 1458 198 66 18 chr3 19469842 19470175 -208054403 - L1MD2 LINE L1 -1 6594 6246 911 216 0 5 chr3 19470181 19470375 -208054203 - L1MD2 LINE L1 -398 6197 6005 1775 241 40 2 chr3 19470377 19471073 -208053505 - L1MD2 LINE L1 -711 5884 5165 305 296 70 42 chr3 19471426 19471639 -208052939 - LTR33 LTR ERVL -162 359 141 1399 206 31 34 chr3 19471639 19471994 -208052584 + MLT1B LTR MaLR 8 361 -29 611 249 63 75 chr3 19473150 19473499 -208051079 - MLT1C LTR MaLR -36 431 87 2505 49 0 10 chr3 19473502 19473810 -208050768 - AluY SINE Alu 0 311 7 3582 260 47 35 chr3 19473819 19475275 -208049303 - L1MD2 LINE L1 -2187 4195 2720 342 0 0 0 chr3 19475275 19475313 -208049265 + (TA)n Simple_repeat Simple_repeat 2 39 0 218 149 40 27 chr3 19476626 19476700 -208047878 + GA-rich Low_complexity Low_complexity 1 75 0 405 298 29 69 chr3 19476731 19476844 -208047734 - L2 LINE L2 -746 2568 2452 2194 90 3 7 chr3 19476844 19477163 -208047415 - AluSx SINE Alu 0 312 1 405 298 29 69 chr3 19477163 19477294 -208047284 - L2 LINE L2 -862 2452 2334 1987 92 10 39 chr3 19477430 19477736 -208046842 + AluY SINE Alu 7 303 -8 2345 55 0 39 chr3 19477767 19478078 -208046500 + AluY SINE Alu 1 299 -12 343 224 122 0 chr3 19478391 19478498 -208046080 + MIR SINE MIR 55 174 -88 325 323 160 10 chr3 19478737 19479025 -208045553 - MER102b DNA MER1_type 0 341 11 787 226 43 0 chr3 19479044 19479208 -208045370 - AluJb SINE Alu -2 310 140 278 331 42 0 chr3 19479249 19479391 -208045187 - MER117 DNA MER1_type -6 191 44 2229 96 7 0 chr3 19479582 19479884 -208044694 - AluY SINE Alu -7 304 1 1263 195 43 10 chr3 19479886 19480334 -208044244 - L1MD2 LINE L1 -3705 2677 2214 196 311 107 0 chr3 19480545 19480648 -208043930 + L2 LINE L2 3200 3313 0 1350 235 35 6 chr3 19480687 19481188 -208043390 - MLT1H1 LTR MaLR -8 547 1 183 247 21 65 chr3 19481893 19481986 -208042592 + L2 LINE L2 2941 3029 -243 296 284 28 46 chr3 19482231 19482340 -208042238 + Charlie7 DNA MER1_type 1 107 -2505 485 288 8 0 chr3 19482642 19482767 -208041811 - MIR SINE MIR -117 145 20 2518 58 0 0 chr3 19483063 19483374 -208041204 + AluY SINE Alu 1 311 0 2127 159 16 14 chr3 19483612 19483976 -208040602 - MLT1A1 LTR MaLR 0 365 1 215 204 0 0 chr3 19484824 19484868 -208039710 + MIR SINE MIR 123 166 -96 1110 316 28 28 chr3 19485008 19485441 -208039137 + MLT1J LTR MaLR 1 433 -78 533 203 6 0 chr3 19486000 19486177 -208038401 + GA-rich Low_complexity Low_complexity 1 178 0 1899 87 23 4 chr3 19487274 19487539 -208037039 + AluSg SINE Alu 21 290 -20 2084 103 7 3 chr3 19488001 19488301 -208036277 - AluSx SINE Alu -11 301 1 2313 58 0 39 chr3 19488390 19488699 -208035879 + AluY SINE Alu 3 299 -12 343 224 122 0 chr3 19489011 19489118 -208035460 + MIR SINE MIR 55 174 -88 325 323 160 10 chr3 19489357 19489645 -208034933 - MER102b DNA MER1_type 0 341 11 787 226 43 0 chr3 19489664 19489828 -208034750 - AluJb SINE Alu -2 310 140 278 331 42 0 chr3 19489869 19490011 -208034567 - MER117 DNA MER1_type -6 191 44 186 43 0 0 chr3 19490203 19490226 -208034352 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2019 108 0 4 chr3 19490226 19490505 -208034073 - AluSg SINE Alu -32 278 1 2045 87 56 0 chr3 19490711 19490997 -208033581 - AluY SINE Alu -8 303 2 526 287 118 4 chr3 19491770 19491976 -208032602 + Charlie2a DNA MER1_type 734 976 -1886 2084 108 7 0 chr3 19491976 19492271 -208032307 - AluSq SINE Alu -16 297 1 526 287 118 4 chr3 19492271 19492318 -208032260 + Charlie2a DNA MER1_type 976 1016 -1846 322 206 98 0 chr3 19493386 19493478 -208031100 + MER5A DNA MER1_type 9 109 -80 689 301 62 55 chr3 19493688 19494090 -208030488 - L2 LINE L2 -2 3270 2866 372 358 12 0 chr3 19494090 19494252 -208030326 - L1ME LINE L1 -329 5792 5629 227 184 0 20 chr3 19494754 19494803 -208029775 + MER53 DNA DNA 101 148 -41 672 265 0 6 chr3 19494988 19495154 -208029424 + MIR SINE MIR 33 197 -65 1949 86 32 4 chr3 19495170 19495449 -208029129 + AluSc SINE Alu 9 295 -14 2175 109 0 3 chr3 19495449 19495752 -208028826 + AluSp SINE Alu 1 302 -11 330 281 22 22 chr3 19495765 19495854 -208028724 - L1MC4 LINE L1 -1339 6703 6615 2330 83 0 0 chr3 19495854 19496154 -208028424 - AluY SINE Alu -11 300 1 610 317 117 0 chr3 19496236 19496536 -208028042 - L2 LINE L2 -97 3216 2882 654 172 94 56 chr3 19496536 19496716 -208027862 - MER53 DNA DNA -2 187 1 326 264 18 45 chr3 19497239 19497349 -208027229 + MIR SINE MIR 41 147 -61 289 336 29 0 chr3 19497837 19497941 -208026637 + MIR3 SINE MIR 88 194 -14 1516 199 2 114 chr3 19498023 19498195 -208026383 + MLT1A1 LTR MaLR 1 105 -260 1604 155 36 4 chr3 19498195 19498500 -208026078 + AluJb SINE Alu 3 316 0 1516 199 2 114 chr3 19498500 19498735 -208025843 + MLT1A1 LTR MaLR 105 365 0 216 272 37 62 chr3 19499024 19499105 -208025473 - MIR SINE MIR -81 181 103 471 228 62 168 chr3 19499150 19499360 -208025218 - MER113 DNA MER1_type? -52 469 238 2154 97 0 0 chr3 19499360 19499638 -208024940 - AluSx SINE Alu -32 280 3 471 228 62 168 chr3 19499638 19499837 -208024741 - MER113 DNA MER1_type? -283 238 124 678 203 0 36 chr3 19499837 19499975 -208024603 + FLAM_A SINE Alu 1 133 0 471 228 62 168 chr3 19499975 19500081 -208024497 - MER113 DNA MER1_type? -397 124 8 334 294 1 0 chr3 19500092 19500177 -208024401 + MIR SINE MIR 64 148 -69 2369 84 0 3 chr3 19500237 19500548 -208024030 - AluY SINE Alu -1 310 1 262 271 12 0 chr3 19501074 19501159 -208023419 - L1MDa LINE L1 -3951 2589 2504 326 265 127 48 chr3 19501160 19501349 -208023229 - L1MDa LINE L1 -4056 2484 2281 258 345 55 12 chr3 19501427 19501592 -208022986 - MIR SINE MIR -22 240 69 229 333 93 20 chr3 19501919 19502069 -208022509 - L2 LINE L2 0 3272 3112 2380 71 0 3 chr3 19502128 19502437 -208022141 + AluSc SINE Alu 1 308 -1 475 297 53 42 chr3 19502813 19503007 -208021571 - L1MC/D LINE L1 -456 5665 5478 2044 110 24 7 chr3 19503022 19503345 -208021233 + AluSp SINE Alu 1 313 0 379 322 30 35 chr3 19503350 19503552 -208021026 - L2 LINE L2 -166 3106 2906 273 369 33 0 chr3 19503723 19503845 -208020733 + MIR SINE MIR 18 143 -65 2520 196 111 6 chr3 19504101 19504606 -208019972 + LTR64 LTR ERVK 1 558 0 617 323 25 39 chr3 19504989 19505268 -208019310 + MER31-int LTR ERV1 349 623 -6135 1627 98 125 68 chr3 19505319 19505614 -208018964 - AluSx SINE Alu 0 312 1 1495 184 47 0 chr3 19505625 19505781 -208018797 - AluJb SINE Alu -21 291 115 198 0 0 0 chr3 19505781 19505803 -208018775 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1495 184 47 0 chr3 19505803 19505924 -208018654 - AluJb SINE Alu -197 115 1 472 241 225 8 chr3 19506154 19506407 -208018171 + MER31-int LTR ERV1 2820 3127 -1809 * 645 227 128 50 chr3 19506394 19506651 -208017927 + MER31-int LTR ERV1 2963 3251 -1685 1759 171 0 10 chr3 19506651 19506949 -208017629 + AluJb SINE Alu 5 299 -13 645 227 128 50 chr3 19506949 19507012 -208017566 + MER31-int LTR ERV1 3251 3308 -1628 2295 175 157 22 chr3 19507438 19507885 -208016693 + LTR64 LTR ERVK 1 521 -37 2203 88 3 0 chr3 19507885 19508179 -208016399 + AluSp SINE Alu 1 295 -18 2295 175 157 22 chr3 19508179 19508223 -208016355 + LTR64 LTR ERVK 521 558 0 271 256 0 49 chr3 19508509 19508591 -208015987 + MLT1H LTR MaLR 127 204 -345 225 220 17 17 chr3 19508791 19508850 -208015728 - Charlie8 DNA MER1_type -2277 140 82 303 172 0 0 chr3 19509233 19509291 -208015287 - L1ME LINE L1 -679 5485 5428 * 1282 198 45 44 chr3 19509290 19509790 -208014788 - L1MB8 LINE L1 0 6178 5680 2173 84 0 7 chr3 19509790 19510103 -208014475 - AluSg SINE Alu 0 311 1 1282 198 45 44 chr3 19510103 19510515 -208014063 - L1MB8 LINE L1 -498 5680 5092 2379 210 36 16 chr3 19510520 19511251 -208013327 - L1ME LINE L1 -738 5436 4693 261 257 57 38 chr3 19511299 19511404 -208013174 - MER20B DNA MER1_type -656 127 21 997 274 118 15 chr3 19511426 19511831 -208012747 + HAL1 LINE L1 1475 1921 -586 201 74 0 0 chr3 19512183 19512210 -208012368 + (GGGAA)n Simple_repeat Simple_repeat 1 27 0 1093 225 61 13 chr3 19512228 19512539 -208012039 - LTR16A LTR ERVL -15 435 110 565 295 82 10 chr3 19514474 19514681 -208009897 + L1M4 LINE L1 2945 3166 -2980 969 119 0 0 chr3 19514936 19515079 -208009499 - FLAM_C SINE Alu 0 143 1 2137 81 9 43 chr3 19515100 19515422 -208009156 - AluY SINE Alu 0 311 1 1754 107 103 34 chr3 19515479 19515770 -208008808 - AluSx SINE Alu 0 312 2 610 239 101 0 chr3 19515902 19516090 -208008488 + MIR SINE MIR 22 228 -34 228 241 69 0 chr3 19517157 19517244 -208007334 - MLT1I LTR MaLR -248 161 69 221 245 206 29 chr3 19517376 19517478 -208007100 - MIR SINE MIR -67 141 22 2395 59 0 0 chr3 19517577 19517867 -208006711 + AluY SINE Alu 1 290 -21 221 0 0 33 chr3 19517870 19517900 -208006678 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 255 247 161 32 chr3 19520657 19520750 -208003828 + MER91C DNA MER1_type 2 106 -34 2285 93 0 0 chr3 19522476 19522776 -208001802 + AluY SINE Alu 1 300 -11 1982 86 19 0 chr3 19522776 19523031 -208001547 + AluY SINE Alu 36 296 -15 206 241 46 81 chr3 19523263 19523350 -208001228 - MIR3 SINE MIR -34 174 91 181 296 28 56 chr3 19523456 19523564 -208001014 - L2 LINE L2 -97 3216 3112 22 56 0 0 chr3 19523572 19523608 -208000970 + AT_rich Low_complexity Low_complexity 1 36 0 276 289 33 79 chr3 19524023 19524175 -208000403 + L2 LINE L2 2970 3114 -158 259 286 143 25 chr3 19525649 19525768 -207998810 - MIR SINE MIR -111 151 19 600 339 120 0 chr3 19526950 19527183 -207997395 - MIR SINE MIR 0 262 2 206 352 106 14 chr3 19527660 19527802 -207996776 - MIR3 SINE MIR -24 184 30 510 244 79 50 chr3 19528470 19528773 -207995805 - MER113 DNA MER1_type? -209 312 1 625 285 29 5 chr3 19528993 19529200 -207995378 - MER58A DNA MER1_type -1 223 12 291 333 106 0 chr3 19529956 19530088 -207994490 + MIR SINE MIR 113 258 -4 261 294 144 20 chr3 19530369 19530515 -207994063 - MIR3 SINE MIR -25 183 20 305 214 48 24 chr3 19530725 19530809 -207993769 + MER74A LTR ERVL 411 496 -62 238 250 0 0 chr3 19531635 19531683 -207992895 + L2 LINE L2 3216 3263 -9 279 282 39 13 chr3 19532009 19532087 -207992491 + MIR SINE MIR 66 145 -63 329 271 225 0 chr3 19532253 19532404 -207992174 + MIR3 SINE MIR 3 187 -21 308 281 185 55 chr3 19533512 19533804 -207990774 + L2 LINE L2 2938 3267 -5 354 200 74 11 chr3 19534009 19534104 -207990474 - MER5A DNA MER1_type -80 109 9 259 169 7 24 chr3 19534701 19534850 -207989728 + AluJo SINE Alu 82 283 -19 221 326 37 4 chr3 19536630 19536744 -207987834 - MIR SINE MIR -72 136 36 1683 127 19 8 chr3 19536836 19537104 -207987474 + AluSg SINE Alu 21 291 -19 308 209 35 0 chr3 19537185 19537271 -207987307 - L1MB3 LINE L1 -1 6182 6094 238 250 0 0 chr3 19537947 19537995 -207986583 + L2 LINE L2 3216 3263 -9 279 282 39 13 chr3 19538321 19538399 -207986179 + MIR SINE MIR 66 145 -63 1990 172 16 19 chr3 19538972 19539338 -207985240 - MLT1A1 LTR MaLR 0 365 1 379 343 33 29 chr3 19540423 19540633 -207983945 - L3 LINE CR1 -28 1549 1339 2292 76 3 16 chr3 19540878 19541181 -207983397 - AluSp SINE Alu -14 299 1 182 350 41 10 chr3 19541675 19541772 -207982806 - L2 LINE L2 -175 3138 3039 543 297 28 10 chr3 19541799 19542176 -207982402 + LTR16C LTR ERVL 40 491 0 248 327 40 10 chr3 19542176 19542277 -207982301 - L2 LINE L2 -239 3033 2930 354 309 103 30 chr3 19542317 19542792 -207981786 + L1M4 LINE L1 3498 4007 -2139 256 103 0 0 chr3 19543274 19543313 -207981265 - L1ME3 LINE L1 -8 6154 6116 447 328 65 15 chr3 19543501 19543702 -207980876 + MIR SINE MIR 25 235 -27 435 102 0 0 chr3 19544283 19544342 -207980236 - Alu SINE Alu -259 59 1 287 388 27 13 chr3 19544381 19544605 -207979973 - L2 LINE L2 -377 2937 2711 624 299 81 42 chr3 19545177 19545512 -207979066 - L2 LINE L2 -8 3305 2958 270 293 48 32 chr3 19545634 19545822 -207978756 - L1M4 LINE L1 -3432 2714 2524 * 948 248 30 87 chr3 19545811 19545889 -207978689 + L1M4 LINE L1 3347 3428 -2718 2316 73 0 10 chr3 19545889 19546190 -207978388 + AluY SINE Alu 1 298 -13 948 248 30 87 chr3 19546190 19546410 -207978168 + L1M4 LINE L1 3428 3659 -2487 860 165 0 0 chr3 19546410 19546543 -207978035 - FLAM_A SINE Alu 0 133 1 948 248 30 87 chr3 19546543 19546704 -207977874 + L1M4 LINE L1 3659 3780 -2366 2165 150 0 0 chr3 19546704 19547011 -207977567 + AluSx SINE Alu 1 307 -5 948 248 30 87 chr3 19547011 19547045 -207977533 + L1M4 LINE L1 3780 3814 -2332 233 280 72 48 chr3 19547151 19547276 -207977302 + MIR SINE MIR 65 192 -70 373 272 24 59 chr3 19548074 19548243 -207976335 + MIR3 SINE MIR 2 164 -44 229 274 69 29 chr3 19549176 19549278 -207975300 + LTR33 LTR ERVL 105 210 -311 370 259 259 5 chr3 19549345 19549565 -207975013 + LTR33A LTR ERVL 228 503 -20 554 139 0 0 chr3 19549668 19549754 -207974824 - AluSg1 SINE Alu -223 86 1 182 274 0 20 chr3 19549763 19549814 -207974764 - MER5B DNA MER1_type -123 55 6 610 216 36 30 chr3 19549874 19550041 -207974537 - LTR38 LTR ERV1 -386 170 3 183 328 60 26 chr3 19550131 19550247 -207974331 + L2 LINE L2 3054 3173 -99 343 264 39 77 chr3 19550347 19550529 -207974049 + MIR SINE MIR 88 262 0 540 245 49 22 chr3 19550609 19550793 -207973785 - L1ME2 LINE L1 -102 6062 5874 570 243 0 40 chr3 19550793 19550941 -207973637 + FRAM SINE Alu 1 135 -41 416 212 73 36 chr3 19551104 19551241 -207973337 - L1M3 LINE L1 -594 5577 5436 1938 123 0 40 chr3 19551270 19551594 -207972984 - AluSx SINE Alu -1 311 1 1038 202 111 0 chr3 19551670 19551913 -207972665 + LTR48B LTR ERV1 1 270 -374 4082 96 9 4 chr3 19551924 19552475 -207972103 - MER41A LTR ERV1 0 554 1 657 157 45 8 chr3 19552483 19552599 -207971979 - MER41A LTR ERV1 0 554 434 339 146 0 0 chr3 19552599 19552654 -207971924 + Alu SINE Alu 1 55 -245 180 378 61 0 chr3 19552858 19552940 -207971638 + MIR SINE MIR 127 213 -49 * 247 240 130 30 chr3 19552912 19553012 -207971566 - MIR SINE MIR -2 260 151 373 224 28 101 chr3 19555245 19555311 -207969267 + L1M4 LINE L1 4642 4711 -1435 2253 97 0 0 chr3 19555311 19555611 -207968967 + AluSg SINE Alu 1 300 -10 373 224 28 101 chr3 19555611 19555723 -207968855 + L1M4 LINE L1 4711 4807 -1339 2106 115 0 13 chr3 19555735 19556047 -207968531 + AluSx SINE Alu 5 312 0 2028 93 4 4 chr3 19556283 19556561 -207968017 + AluSq SINE Alu 1 278 -35 369 43 0 0 chr3 19556564 19556611 -207967967 + (CA)n Simple_repeat Simple_repeat 1 47 0 675 103 0 10 chr3 19556612 19556709 -207967869 + AluS SINE Alu 1 96 -217 247 236 42 28 chr3 19557202 19557274 -207967304 - MIR SINE MIR -72 190 118 * 340 321 45 0 chr3 19557265 19557377 -207967201 + MIR SINE MIR 30 146 -62 2226 113 0 0 chr3 19557382 19557684 -207966894 + AluSx SINE Alu 1 302 -10 393 233 0 44 chr3 19557694 19557808 -207966770 + L1MC4 LINE L1 1995 6983 -1339 3230 62 0 0 chr3 19557814 19558250 -207966328 + HUERS-P1 LTR ERV1 5182 5617 -646 1690 78 9 0 chr3 19558386 19558604 -207965974 - AluSx SINE Alu -92 220 1 313 81 0 3 chr3 19558605 19558663 -207965915 - L1M LINE L1 -736 5428 5372 2137 88 0 7 chr3 19558664 19558960 -207965618 - AluY SINE Alu -17 294 1 344 206 35 136 chr3 19559259 19559420 -207965158 + MIR SINE MIR 18 160 -62 229 254 162 0 chr3 19560218 19560311 -207964267 - MIR SINE MIR -69 139 31 1061 180 76 0 chr3 19560538 19560788 -207963790 - L1M3 LINE L1 -359 5824 5556 2227 82 0 41 chr3 19560789 19561107 -207963471 - AluSp SINE Alu -8 305 1 678 183 58 47 chr3 19561108 19561299 -207963279 - Charlie1 DNA MER1_type -572 2189 1997 527 128 0 0 chr3 19561318 19561396 -207963182 - AluJo SINE Alu -8 304 227 968 124 85 13 chr3 19561396 19561549 -207963029 - AluJo SINE Alu -148 164 1 1679 144 3 56 chr3 19561613 19561918 -207962660 + AluJo SINE Alu 1 289 -23 2145 95 28 0 chr3 19561938 19562223 -207962355 + AluSc SINE Alu 1 293 -16 425 260 90 0 chr3 19563143 19563343 -207961235 - L1M4 LINE L1 -2085 4061 3844 2258 107 7 3 chr3 19563345 19563645 -207960933 - AluSg SINE Alu -9 301 1 431 288 71 43 chr3 19563677 19563861 -207960717 + L1ME4a LINE L1 5926 6114 -7 2265 101 7 0 chr3 19563933 19564230 -207960348 + AluSx SINE Alu 1 299 -13 276 263 81 0 chr3 19564326 19564425 -207960153 + L2 LINE L2 3180 3286 -27 442 221 76 15 chr3 19564519 19564650 -207959928 + LTR16A1 LTR ERVL 190 328 -129 1393 94 0 0 chr3 19564750 19564921 -207959657 + AluSq SINE Alu 130 300 -13 189 0 0 0 chr3 19564992 19565013 -207959565 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1816 106 136 0 chr3 19565117 19565390 -207959188 - AluSx SINE Alu -2 310 1 2432 92 0 0 chr3 19565395 19565700 -207958878 - AluY SINE Alu -6 305 1 39 0 0 0 chr3 19565762 19565801 -207958777 + AT_rich Low_complexity Low_complexity 1 39 0 1434 139 14 89 chr3 19565826 19565975 -207958603 - AluJo SINE Alu -44 268 109 2169 96 18 3 chr3 19565975 19566257 -207958321 + AluSq SINE Alu 1 286 -27 261 0 0 0 chr3 19566257 19566286 -207958292 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1434 139 14 89 chr3 19566286 19566297 -207958281 - AluJo SINE Alu -202 110 100 2249 96 0 0 chr3 19566297 19566578 -207958000 + AluSg SINE Alu 1 281 -29 1965 88 12 0 chr3 19566578 19566827 -207957751 + AluSq SINE Alu 43 294 -19 1434 139 14 89 chr3 19566827 19566944 -207957634 - AluJo SINE Alu -210 102 9 274 157 14 14 chr3 19567826 19567896 -207956682 + (CA)n Simple_repeat Simple_repeat 1 70 0 227 335 0 0 chr3 19567987 19568084 -207956494 + MIR SINE MIR 63 160 -48 482 274 178 67 chr3 19568110 19568486 -207956092 + Charlie8 DNA MER1_type 29 446 -1971 1484 122 0 0 chr3 19569233 19569430 -207955148 + AluSg/x SINE Alu 79 275 -37 2417 97 0 7 chr3 19569736 19570045 -207954533 + AluY SINE Alu 1 307 -4 785 238 144 81 chr3 19570212 19570571 -207954007 - MLT1H LTR MaLR 0 549 151 3003 108 101 41 chr3 19570571 19571014 -207953564 - MER4A LTR ERV1 -4 596 109 2222 119 0 0 chr3 19571014 19571332 -207953246 + AluSx SINE Alu 1 318 0 3003 108 101 41 chr3 19571332 19571448 -207953130 - MER4A LTR ERV1 -491 109 1 785 238 144 81 chr3 19571448 19571559 -207953019 - MLT1H LTR MaLR -398 151 49 865 167 17 11 chr3 19571559 19571733 -207952845 + L1M3 LINE L1 5411 5585 -598 1902 121 40 4 chr3 19571858 19572130 -207952448 - AluSg SINE Alu -28 282 1 2346 101 7 0 chr3 19572217 19572515 -207952063 - AluSx SINE Alu -12 300 1 718 288 22 18 chr3 19572608 19572882 -207951696 + L1ME LINE L1 5296 5570 -594 2066 139 30 0 chr3 19572897 19573200 -207951378 - AluSq SINE Alu -1 312 1 265 382 7 21 chr3 19573624 19573768 -207950810 - MIR3 SINE MIR -25 183 42 357 252 29 10 chr3 19574082 19574185 -207950393 + MIR SINE MIR 21 125 -83 821 153 32 32 chr3 19574217 19574406 -207950172 + MER53 DNA DNA 1 189 0 471 241 25 16 chr3 19574446 19574597 -207949981 + MIR3 SINE MIR 3 153 -79 1778 128 69 11 chr3 19574652 19574926 -207949652 + AluJb SINE Alu 1 290 -22 246 203 368 15 chr3 19575558 19575691 -207948887 + MLT1K LTR MaLR 387 566 -22 297 250 10 42 chr3 19576461 19576557 -207948021 + MIR SINE MIR 109 201 -61 664 88 0 0 chr3 19576763 19576854 -207947724 - AluS SINE Alu -221 92 2 1098 236 56 25 chr3 19576887 19576944 -207947634 + MER97c DNA MER1_type? 204 258 -832 1802 175 13 10 chr3 19576944 19577252 -207947326 - AluJo SINE Alu -3 309 1 1098 236 56 25 chr3 19577252 19577550 -207947028 + MER97c DNA MER1_type? 258 570 -520 451 226 77 36 chr3 19577562 19577810 -207946768 + MER97c DNA MER1_type? 830 1087 -3 210 128 0 0 chr3 19578059 19578098 -207946480 + (TG)n Simple_repeat Simple_repeat 1 39 0 2097 182 24 73 chr3 19578106 19578598 -207945980 - MLT2B2 LTR ERVL -38 447 3 797 195 19 61 chr3 19579334 19579596 -207944982 + L1MC5 LINE L1 7473 7723 -238 2546 116 24 53 chr3 19579731 19580161 -207944417 + L1MB3 LINE L1 5705 6146 -37 2141 103 0 60 chr3 19580161 19580480 -207944098 + AluSq SINE Alu 1 300 -13 948 211 0 0 chr3 19580489 19580660 -207943918 + FAM SINE Alu 1 171 -4 2546 116 24 53 chr3 19580660 19580710 -207943868 + L1MB3 LINE L1 6154 6181 -2 498 256 52 6 chr3 19580713 19580885 -207943693 + L1M4 LINE L1 2835 3014 -3132 1372 207 21 153 chr3 19580889 19581314 -207943264 + MLT2B1 LTR ERVL 5 373 -41 1538 180 55 3 chr3 19581344 19581633 -207942945 - MER7A DNA MER2_type -43 303 2 328 93 17 2 chr3 19581633 19581690 -207942888 + MLT2C2 LTR ERVL 415 464 0 301 328 132 49 chr3 19581847 19582051 -207942527 + L3 LINE CR1 1263 1483 -94 2032 142 3 3 chr3 19582129 19582425 -207942153 + AluSq SINE Alu 1 296 -17 676 196 0 8 chr3 19582808 19582941 -207941637 + AluJo/FLAM SINE Alu 2 133 -179 1972 112 0 4 chr3 19582944 19583203 -207941375 + AluSx SINE Alu 1 258 -54 233 315 0 0 chr3 19583220 19583293 -207941285 - L1M2 LINE L1 -754 5537 5465 550 245 0 14 chr3 19583904 19584047 -207940531 - MIR SINE MIR -113 149 9 293 223 122 74 chr3 19584865 19585013 -207939565 + MER45C DNA AcHobo 541 695 -258 2945 167 44 34 chr3 19585380 19585526 -207939052 + L1MB3 LINE L1 5465 5608 -575 2375 103 0 3 chr3 19585526 19585828 -207938750 + AluSq SINE Alu 1 301 -12 2945 167 44 34 chr3 19585828 19586130 -207938448 + L1MB3 LINE L1 5608 5925 -258 2512 91 0 0 chr3 19586130 19586437 -207938141 - AluSg SINE Alu -3 307 1 2945 167 44 34 chr3 19586437 19586663 -207937915 + L1MB3 LINE L1 5925 6147 -36 304 86 0 86 chr3 19586656 19586714 -207937864 + L1MA9 LINE L1 5995 6047 -244 * 960 206 6 0 chr3 19586910 19587080 -207937498 - AluJb SINE Alu -5 307 137 1485 148 86 52 chr3 19587523 19587814 -207936764 - AluJo SINE Alu -9 303 3 1822 166 3 13 chr3 19590940 19591241 -207933337 + AluJo SINE Alu 5 302 -10 2125 116 7 3 chr3 19591241 19591535 -207933043 + AluSp SINE Alu 1 295 -18 425 286 83 29 chr3 19593101 19593307 -207931271 + Charlie2a DNA MER1_type 734 927 -1935 2074 106 7 30 chr3 19593307 19593610 -207930968 - AluSg SINE Alu -14 296 1 425 286 83 29 chr3 19593610 19593631 -207930947 + Charlie2a DNA MER1_type 927 945 -1917 2250 81 9 43 chr3 19593631 19593953 -207930625 - AluY SINE Alu 0 311 1 425 286 83 29 chr3 19593953 19593965 -207930613 + Charlie2a DNA MER1_type 945 987 -1875 342 121 229 12 chr3 19594030 19594113 -207930465 - AluSc SINE Alu 0 299 199 286 277 78 21 chr3 19594315 19594456 -207930122 + L1MC4a LINE L1 5845 5993 -1815 1673 164 53 27 chr3 19596600 19596899 -207927679 + AluJo SINE Alu 1 307 -5 195 346 24 44 chr3 19597353 19597558 -207927020 + L2 LINE L2 2921 3121 -151 293 223 122 74 chr3 19597910 19598058 -207926520 + MER45C DNA AcHobo 541 695 -258 257 246 16 0 chr3 19598056 19598117 -207926461 + MER45C DNA AcHobo 892 953 0 * 272 194 65 0 chr3 19598418 19598480 -207926098 - MIR SINE MIR -73 189 124 364 275 37 0 chr3 19598869 19598978 -207925600 + L3 LINE CR1 1356 1468 -109 338 353 46 7 chr3 19600029 19600205 -207924373 + MIR SINE MIR 3 183 -72 236 396 58 7 chr3 19600844 19600998 -207923580 - MIR SINE MIR -53 209 48 748 312 83 10 chr3 19601357 19601767 -207922811 - L1MC4 LINE L1 -155 7887 7448 332 317 29 18 chr3 19602054 19602262 -207922316 + MIR SINE MIR 22 230 -32 200 322 0 0 chr3 19602925 19602984 -207921594 - MER5A DNA MER1_type -95 94 36 548 115 0 11 chr3 19603178 19603265 -207921313 + AluSg/x SINE Alu 208 293 -16 182 360 137 7 chr3 19603463 19603616 -207920962 + MIR SINE MIR 77 249 -13 1045 228 22 33 chr3 19603616 19603892 -207920686 - MLT1A1 LTR MaLR -92 273 1 1187 241 71 38 chr3 19604271 19604301 -207920277 + L1M4 LINE L1 3473 3501 -2645 2200 134 0 0 chr3 19604301 19604599 -207919979 - AluSg SINE Alu -12 298 1 1187 241 71 38 chr3 19604599 19604992 -207919586 + L1M4 LINE L1 3501 3910 -2236 435 323 112 28 chr3 19605033 19605318 -207919260 + L2 LINE L2 3005 3313 0 360 220 187 0 chr3 19605767 19605888 -207918690 - FRAM/FAM SINE Alu -82 84 1 416 273 0 0 chr3 19605994 19606093 -207918485 - MIR SINE MIR -101 161 63 260 297 20 0 chr3 19606966 19607067 -207917511 + MER113 DNA MER1_type? 14 116 -405 379 221 11 11 chr3 19607269 19607364 -207917214 + MIR SINE MIR 32 126 -136 306 127 0 18 chr3 19607485 19607540 -207917038 - MLT2B2 LTR ERVL -3 512 459 1242 218 122 33 chr3 19607619 19608045 -207916533 - MLT2B2 LTR ERVL -51 464 1 234 299 134 0 chr3 19608485 19608582 -207915996 + MIR3 SINE MIR 82 191 -17 1673 161 27 65 chr3 19609558 19609925 -207914653 + MLT1A1 LTR MaLR 12 364 -1 1111 280 34 9 chr3 19610047 19610372 -207914206 + L1MC1 LINE L1 6000 6332 -1 1678 181 13 26 chr3 19610883 19611192 -207913386 - AluJo SINE Alu -6 306 2 286 145 0 32 chr3 19611194 19611256 -207913322 - L1MC2 LINE L1 -13 6331 6272 245 258 93 0 chr3 19611258 19611355 -207913223 - L1MD3 LINE L1 -218 7777 7672 2305 102 0 3 chr3 19611825 19612129 -207912449 - AluSx SINE Alu -9 303 1 3439 45 6 57 chr3 19612749 19612790 -207911788 + HUERS-P1 LTR ERV1 5798 5840 -423 2190 128 3 0 chr3 19612790 19613074 -207911504 + AluSx SINE Alu 1 288 -24 210 37 0 0 chr3 19613074 19613101 -207911477 + (CA)n Simple_repeat Simple_repeat 2 28 0 2190 128 3 0 chr3 19613101 19613112 -207911466 + AluSx SINE Alu 288 297 -15 3439 45 6 57 chr3 19613112 19613561 -207911017 + HUERS-P1 LTR ERV1 5840 6263 0 2177 42 76 0 chr3 19613561 19613849 -207910729 + LTR8 LTR ERV1 1 310 -381 465 250 25 0 chr3 19613982 19614102 -207910476 - L2 LINE L2 -6 3266 3144 215 329 123 24 chr3 19614236 19614406 -207910172 + L3 LINE CR1 621 807 -770 1751 108 8 0 chr3 19615090 19615330 -207909248 - AluSx SINE Alu -70 242 1 313 81 0 3 chr3 19615331 19615389 -207909189 - L1M LINE L1 -734 5428 5372 1299 102 77 0 chr3 19615390 19615549 -207909029 - AluY SINE Alu -17 294 116 342 0 0 0 chr3 19615549 19615587 -207908991 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1299 102 77 0 chr3 19615587 19615623 -207908955 - AluY SINE Alu -195 116 84 406 174 66 35 chr3 19615646 19615678 -207908900 - L1 LINE L1 -799 5347 5317 1591 183 3 29 chr3 19615678 19615984 -207908594 - AluJb SINE Alu -2 310 13 406 174 66 35 chr3 19615984 19616108 -207908470 - L1 LINE L1 -829 5317 5209 460 234 21 28 chr3 19616217 19616358 -207908220 - L1MC4 LINE L1 -455 7587 7448 359 381 30 26 chr3 19616645 19616876 -207907702 + MIR SINE MIR 22 253 -9 268 250 0 0 chr3 19617504 19617568 -207907010 + AluS SINE Alu 226 289 -12 248 0 0 30 chr3 19617575 19617608 -207906970 + (CAA)n Simple_repeat Simple_repeat 2 33 0 445 365 117 5 chr3 19618984 19619206 -207905372 + MIR SINE MIR 16 262 0 2122 124 0 0 chr3 19620091 19620389 -207904189 + AluSx SINE Alu 1 298 -14 1953 94 0 0 chr3 19620389 19620645 -207903933 + AluY SINE Alu 41 296 -15 1478 104 0 5 chr3 19620645 19620846 -207903732 + AluSg SINE Alu 2 201 -109 2484 57 0 10 chr3 19620846 19621160 -207903418 + AluY SINE Alu 1 311 0 382 221 24 24 chr3 19621296 19621423 -207903155 + L1MB3 LINE L1 5941 6067 -116 1436 135 27 84 chr3 19621571 19621867 -207902711 - AluJb SINE Alu -21 291 13 234 197 0 49 chr3 19623045 19623106 -207901472 - MER66A LTR ERV1 -379 99 42 347 213 135 46 chr3 19623134 19623288 -207901290 - L1ME LINE L1 -461 5701 5537 588 111 0 33 chr3 19623289 19623379 -207901199 + AluJ/FLAM SINE Alu 1 87 -225 762 204 79 5 chr3 19623380 19623596 -207900982 - L1ME LINE L1 -616 5548 5317 1679 135 0 121 chr3 19623599 19623803 -207900775 - AluJb SINE Alu -2 300 152 1955 127 14 3 chr3 19623803 19624095 -207900483 - AluSq SINE Alu -18 295 1 1679 135 0 121 chr3 19624095 19624230 -207900348 - AluJb SINE Alu -150 152 2 731 156 75 6 chr3 19624287 19624476 -207900102 - AluSp SINE Alu 0 318 119 260 246 0 0 chr3 19625113 19625170 -207899408 + LTR33A LTR ERVL 467 523 0 22 35 0 0 chr3 19625246 19625275 -207899303 + AT_rich Low_complexity Low_complexity 1 29 0 1475 159 82 0 chr3 19625431 19625676 -207898902 - AluJo SINE Alu -45 267 3 2489 161 4 28 chr3 19625680 19626188 -207898390 - L1M4 LINE L1 -362 5822 5327 1599 165 7 21 chr3 19626190 19626481 -207898097 - AluSx SINE Alu -13 299 13 386 320 115 0 chr3 19628119 19628275 -207896303 + MIR3 SINE MIR 24 197 -11 365 323 62 12 chr3 19630132 19630293 -207894285 - L3 LINE CR1 -529 1048 880 191 263 0 0 chr3 19630310 19630348 -207894230 + MIR SINE MIR 210 247 -15 355 368 61 36 chr3 19631396 19631673 -207892905 + L3 LINE CR1 1161 1444 -133 305 306 61 0 chr3 19632410 19632508 -207892070 + MER5A DNA MER1_type 1 104 -85 289 311 130 17 chr3 19633048 19633225 -207891353 - L3 LINE CR1 -50 1527 1331 191 291 73 0 chr3 19634176 19634231 -207890347 + L2 LINE L2 3250 3308 -5 221 415 10 35 chr3 19635341 19635541 -207889037 - MIR3 SINE MIR -13 195 1 732 136 0 0 chr3 19635836 19635946 -207888632 - FRAM SINE Alu -4 172 63 189 0 81 27 chr3 19636328 19636365 -207888213 + A-rich Low_complexity Low_complexity 2 40 0 345 319 58 30 chr3 19636389 19636717 -207887861 + L2 LINE L2 2709 3049 -223 396 271 101 25 chr3 19637055 19637222 -207887356 - MIR3 SINE MIR -49 159 1 394 285 101 7 chr3 19638559 19638707 -207885871 - MIR3 SINE MIR -49 159 19 254 300 0 0 chr3 19640514 19640574 -207884004 + L2 LINE L2 3228 3287 -26 612 291 19 43 chr3 19641455 19641665 -207882913 - L3 LINE CR1 -2 1575 1371 336 252 27 0 chr3 19642209 19642320 -207882258 + Charlie8 DNA MER1_type 93 206 -2211 3614 238 80 76 chr3 19642374 19643474 -207881104 + L1M4b LINE L1 95 1189 -5666 180 77 0 0 chr3 19643474 19643500 -207881078 + (TG)n Simple_repeat Simple_repeat 2 27 0 3614 238 80 76 chr3 19643500 19643738 -207880840 + L1M4b LINE L1 1189 1425 -5430 452 0 52 0 chr3 19643738 19643796 -207880782 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 3614 238 80 76 chr3 19643796 19643990 -207880588 + L1M4b LINE L1 1425 1627 -5228 2342 68 3 19 chr3 19643990 19644298 -207880280 - AluY SINE Alu -8 303 1 3614 238 80 76 chr3 19644298 19644406 -207880172 + L1M4b LINE L1 1627 1733 -5122 1436 135 27 84 chr3 19644790 19645086 -207879492 - AluJb SINE Alu -21 291 13 752 220 28 16 chr3 19647639 19647821 -207876757 + MER20 DNA MER1_type 30 213 -6 229 254 162 0 chr3 19648314 19648407 -207876171 + MIR SINE MIR 31 139 -69 519 311 18 31 chr3 19648651 19648876 -207875702 + MLT1I LTR MaLR 184 405 -4 326 212 35 136 chr3 19649205 19649366 -207875212 - MIR SINE MIR -62 146 18 2442 74 0 0 chr3 19649665 19649964 -207874614 + AluSg SINE Alu 1 299 -11 193 253 13 63 chr3 19650479 19650558 -207874020 - L2 LINE L2 -1 3271 3197 287 359 167 0 chr3 19650588 19650839 -207873739 + L2 LINE L2 3019 3311 -2 227 331 71 16 chr3 19651284 19651411 -207873167 + MIR SINE MIR 60 193 -69 247 333 0 0 chr3 19651778 19651841 -207872737 + MIR SINE MIR 110 172 -90 253 222 68 60 chr3 19652845 19652962 -207871616 - Charlie8 DNA MER1_type -1940 477 360 257 281 50 62 chr3 19653067 19653227 -207871351 + Charlie8 DNA MER1_type 25 182 -2235 374 339 0 16 chr3 19653388 19653509 -207871069 + MIR SINE MIR 81 199 -63 357 301 88 18 chr3 19654005 19654231 -207870347 + L1ME LINE L1 5520 5761 -360 304 193 0 0 chr3 19654525 19654582 -207869996 + L2 LINE L2 3211 3267 -5 814 193 51 6 chr3 19655537 19655713 -207868865 - MLT1A1 LTR MaLR -180 185 2 807 172 32 6 chr3 19655713 19655868 -207868710 + MLT1A1 LTR MaLR 206 364 -1 376 263 128 13 chr3 19656314 19656470 -207868108 + MIR SINE MIR 77 250 -12 218 347 157 0 chr3 19656502 19656623 -207867955 - MIR SINE MIR -109 153 14 290 317 129 29 chr3 19657380 19657620 -207866958 + L2 LINE L2 3050 3313 0 246 241 12 84 chr3 19657755 19657838 -207866740 - L2 LINE L2 -3 3269 3193 2252 106 3 0 chr3 19657851 19658162 -207866416 + AluSp SINE Alu 2 313 0 483 325 13 0 chr3 19658511 19658662 -207865916 - MIR SINE MIR -1 261 109 2102 124 0 10 chr3 19659435 19659733 -207864845 - AluSx SINE Alu -15 297 3 478 253 19 32 chr3 19659832 19659990 -207864588 - AluSg/x SINE Alu -23 289 134 532 313 10 10 chr3 19660316 19660508 -207864070 - AluY SINE Alu -119 192 1 22 0 0 0 chr3 19660511 19660533 -207864045 + AT_rich Low_complexity Low_complexity 1 22 0 2309 93 0 3 chr3 19660534 19660834 -207863744 + AluSp SINE Alu 1 299 -14 1965 118 14 7 chr3 19660846 19661143 -207863435 + AluSp SINE Alu 1 299 -14 1233 313 65 28 chr3 19661154 19661758 -207862820 - L1ME3A LINE L1 -50 6120 5495 1693 180 0 7 chr3 19661769 19662069 -207862509 - AluJb SINE Alu -14 298 1 4048 218 24 8 chr3 19662101 19663481 -207861097 - L1MB3 LINE L1 -7 6176 4772 344 299 123 8 chr3 19664036 19664198 -207860380 - MIR SINE MIR -63 145 20 224 289 31 31 chr3 19664501 19664598 -207859980 + L2 LINE L2 2661 2757 -557 468 321 53 5 chr3 19664868 19665058 -207859520 + MIR SINE MIR 14 212 -50 219 294 29 0 chr3 19665289 19665357 -207859221 - MIR SINE MIR -65 143 74 430 293 58 10 chr3 19665882 19666090 -207858488 - L2 LINE L2 -260 3053 2836 199 355 153 0 chr3 19666153 19666342 -207858236 - L2 LINE L2 -619 2695 2478 268 265 36 0 chr3 19667095 19667178 -207857400 - HAL1 LINE L1 -1155 1352 1267 364 240 40 34 chr3 19667700 19667927 -207856651 + (CTCA)n Simple_repeat Simple_repeat 1 228 0 340 319 6 6 chr3 19667935 19668101 -207856477 + (CA)n Simple_repeat Simple_repeat 1 166 0 782 161 0 29 chr3 19668817 19668986 -207855592 - FLAM_C SINE Alu 0 165 1 271 336 22 22 chr3 19669520 19669654 -207854924 - MIR SINE MIR -50 212 79 283 359 70 6 chr3 19674111 19674282 -207850296 - MIR SINE MIR -62 146 11 805 169 131 0 chr3 19674603 19674763 -207849815 + MER5A DNA MER1_type 5 185 -4 183 80 0 0 chr3 19675092 19675117 -207849461 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 782 205 122 0 chr3 19675117 19675273 -207849305 - FAM SINE Alu 0 175 1 224 331 120 23 chr3 19675804 19675979 -207848599 - L3 LINE CR1 -765 812 621 493 231 25 0 chr3 19676113 19676234 -207848344 + L2 LINE L2 3144 3267 -5 1489 201 7 7 chr3 19676562 19676851 -207847727 + AluJb SINE Alu 1 289 -23 2303 70 3 26 chr3 19677213 19677525 -207847053 - AluSc SINE Alu -4 305 1 2301 78 7 0 chr3 19677663 19677959 -207846619 - AluSg SINE Alu -12 298 1 308 197 15 15 chr3 19678086 19678152 -207846426 + MIR SINE MIR 112 177 -85 611 167 0 65 chr3 19678163 19678301 -207846277 + FLAM_A SINE Alu 13 141 -1 219 266 76 0 chr3 19679252 19679331 -207845247 - MIR SINE MIR -75 133 49 2982 153 20 43 chr3 19679373 19679929 -207844649 + L1MB3 LINE L1 5640 6182 -1 655 299 56 23 chr3 19680647 19680951 -207843627 + LTR37A LTR ERV1 34 347 -79 1672 165 16 13 chr3 19682513 19682634 -207841944 + AluJb SINE Alu 1 120 -192 207 0 0 0 chr3 19682634 19682657 -207841921 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1672 165 16 13 chr3 19682657 19682844 -207841734 + AluJb SINE Alu 120 310 -2 773 258 74 37 chr3 19682906 19683313 -207841265 - MER113 DNA MER1_type? -99 422 1 2028 123 13 0 chr3 19683678 19683978 -207840600 - AluSq SINE Alu -9 304 1 1162 185 65 17 chr3 19684106 19684398 -207840180 - L1MD1 LINE L1 -12 6230 5925 26 0 0 0 chr3 19684704 19684730 -207839848 + GC_rich Low_complexity Low_complexity 1 26 0 1536 131 72 56 chr3 19685781 19685945 -207838633 - AluSx SINE Alu -1 311 151 207 0 0 0 chr3 19685945 19685968 -207838610 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1536 131 72 56 chr3 19685968 19685983 -207838595 - AluSx SINE Alu -161 151 138 1474 71 5 5 chr3 19685983 19686179 -207838399 - AluSq SINE Alu -43 270 75 1536 131 72 56 chr3 19686179 19686304 -207838274 - AluSx SINE Alu -174 138 1 1099 91 0 0 chr3 19686305 19686448 -207838130 - AluSq/x SINE Alu -170 143 1 268 352 49 21 chr3 19687467 19687609 -207836969 - MIR3 SINE MIR -33 175 30 226 287 30 10 chr3 19688149 19688250 -207836328 - LTR16A1 LTR ERVL 0 457 355 2119 89 29 0 chr3 19689518 19689799 -207834779 - AluSc SINE Alu -16 293 5 246 337 132 26 chr3 19689813 19690199 -207834379 - L2 LINE L2 -31 3241 2815 240 297 137 33 chr3 19690783 19690886 -207833692 - MER113 DNA MER1_type? -96 425 334 1095 187 21 21 chr3 19690886 19691127 -207833451 - L1MB3 LINE L1 -2 6181 5941 240 297 137 33 chr3 19691127 19691205 -207833373 - MER113 DNA MER1_type? -187 334 225 812 119 0 0 chr3 19691267 19691385 -207833193 - AluY SINE Alu -4 307 190 225 32 32 0 chr3 19691526 19691557 -207833021 + L1MB3 LINE L1 5443 5474 -697 2034 130 0 3 chr3 19691568 19691893 -207832685 - AluSx SINE Alu 0 324 1 4005 132 28 28 chr3 19691934 19692584 -207831994 + L1MB3 LINE L1 5477 6126 -57 1954 114 0 58 chr3 19692584 19692909 -207831669 + AluSq SINE Alu 1 306 -7 969 222 0 0 chr3 19692912 19693083 -207831495 + FAM SINE Alu 1 171 -4 4005 132 28 28 chr3 19693083 19693133 -207831445 + L1MB3 LINE L1 6127 6181 -2 372 291 52 6 chr3 19693136 19693308 -207831270 + L1M4 LINE L1 2835 3014 -3132 484 178 19 9 chr3 19693312 19693419 -207831159 + MLT2B2 LTR ERVL 5 112 -403 228 336 77 0 chr3 19693590 19693694 -207830884 + L1MC/D LINE L1 5800 5911 -1897 2380 71 0 3 chr3 19693931 19694240 -207830338 - AluSc SINE Alu -1 308 1 182 347 93 20 chr3 19694299 19694449 -207830129 + L2 LINE L2 3112 3272 0 258 345 55 12 chr3 19694776 19694941 -207829637 + MIR SINE MIR 69 240 -22 392 252 0 9 chr3 19695431 19695538 -207829040 - L1M4 LINE L1 -1506 4640 4535 2170 100 3 17 chr3 19695542 19695842 -207828736 + AluSp SINE Alu 3 298 -15 5730 136 169 26 chr3 19695852 19696975 -207827603 + pTR5 LTR ERV1 742 2025 -413 420 224 10 0 chr3 19696975 19697073 -207827505 + LTR30 LTR ERV1 544 642 -80 1286 118 0 0 chr3 19697073 19697259 -207827319 + pTR5 LTR ERV1 66 251 -2187 253 275 28 35 chr3 19697361 19697503 -207827075 + MER66B LTR ERV1 305 445 -41 687 250 35 104 chr3 19697521 19697572 -207827006 + L1ME3 LINE L1 5713 5766 -396 2126 99 0 0 chr3 19697572 19697884 -207826694 + AluSg SINE Alu 1 310 0 687 250 35 104 chr3 19697884 19698015 -207826563 + L1ME3 LINE L1 5766 5904 -258 770 180 6 37 chr3 19698015 19698176 -207826402 - FRAM SINE Alu -10 156 1 687 250 35 104 chr3 19698176 19698368 -207826210 + L1ME3 LINE L1 5904 6062 -100 359 267 9 19 chr3 19698525 19698630 -207825948 - MIR SINE MIR -71 191 88 658 216 36 30 chr3 19698935 19699102 -207825476 + LTR38 LTR ERV1 3 170 -386 2057 107 17 0 chr3 19699222 19699513 -207825065 + AluSg SINE Alu 1 296 -14 2493 65 0 0 chr3 19699513 19699822 -207824756 + AluY SINE Alu 1 309 -2 2000 131 0 10 chr3 19700092 19700404 -207824174 + AluY SINE Alu 1 309 -2 894 121 0 0 chr3 19700542 19700666 -207823912 - AluSq/x SINE Alu -189 124 1 2406 72 3 0 chr3 19700677 19700981 -207823597 - AluSp SINE Alu -8 305 1 273 118 0 0 chr3 19700982 19701033 -207823545 - L1M4 LINE L1 -815 5331 5281 225 232 54 0 chr3 19701049 19701105 -207823473 + MIR SINE MIR 186 244 -18 434 271 46 7 chr3 19701108 19701259 -207823319 - MER112 DNA MER1_type -102 158 2 786 251 71 10 chr3 19701327 19701607 -207822971 + MER46C DNA MER2_type 1 298 -40 1147 232 74 20 chr3 19701607 19701944 -207822634 - LTR48B LTR ERV1 0 644 289 1071 74 7 0 chr3 19701944 19702092 -207822486 + MER41B LTR ERV1 1 149 -486 2559 83 6 14 chr3 19702092 19702453 -207822125 - LTR8 LTR ERV1 0 691 334 31 26 0 0 chr3 19703001 19703039 -207821539 + GC_rich Low_complexity Low_complexity 1 38 0 237 221 29 29 chr3 19703190 19703294 -207821284 + C-rich Low_complexity Low_complexity 5 108 0 23 54 0 0 chr3 19703311 19703348 -207821230 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 19703441 19703463 -207821115 + GC_rich Low_complexity Low_complexity 1 22 0 321 310 9 0 chr3 19704956 19705069 -207819509 + MIR SINE MIR 36 149 -113 237 224 0 0 chr3 19705706 19705755 -207818823 + L1M2 LINE L1 5489 5537 -763 1929 105 0 0 chr3 19705772 19706030 -207818548 - AluSx SINE Alu -54 258 1 978 188 96 8 chr3 19706031 19706271 -207818307 - L1MB7 LINE L1 -354 5830 5570 870 194 46 25 chr3 19706514 19706710 -207817868 + MER20 DNA MER1_type 20 219 0 2035 120 0 38 chr3 19706880 19707196 -207817382 + AluSq SINE Alu 1 304 -9 1763 147 38 10 chr3 19708572 19708864 -207815714 + AluSx SINE Alu 1 300 -12 374 197 0 0 chr3 19708964 19709035 -207815543 + AluSg/x SINE Alu 209 279 -21 261 0 0 0 chr3 19709036 19709065 -207815513 + (TA)n Simple_repeat Simple_repeat 2 30 0 1919 119 38 3 chr3 19709639 19709932 -207814646 - AluSg SINE Alu -7 303 1 2207 101 7 0 chr3 19710019 19710317 -207814261 - AluSx SINE Alu -12 300 1 739 288 22 18 chr3 19710410 19710684 -207813894 + L1ME LINE L1 5296 5570 -594 2071 141 0 0 chr3 19710699 19711011 -207813567 - AluSq SINE Alu -1 312 1 1124 202 111 0 chr3 19711087 19711330 -207813248 + LTR48B LTR ERV1 1 270 -374 2641 86 14 0 chr3 19711341 19711702 -207812876 - MER41A LTR ERV1 0 554 189 315 297 79 0 chr3 19761882 19761983 -207762595 + MIR SINE MIR 35 143 -65 333 297 162 0 chr3 19762146 19762294 -207762284 - MIR SINE MIR -15 247 76 275 259 232 38 chr3 19762837 19763169 -207761409 + L2 LINE L2 2859 3311 -2 248 276 69 26 chr3 19763682 19763798 -207760780 + MIR3 SINE MIR 71 191 -17 245 294 103 24 chr3 19764421 19764547 -207760031 + Charlie8 DNA MER1_type 21 156 -2261 365 304 65 24 chr3 19765415 19765583 -207758995 - MIR SINE MIR -7 255 81 1858 144 19 2 chr3 19765614 19766013 -207758565 + L1MC1 LINE L1 5186 5589 -745 886 268 0 9 chr3 19766013 19766237 -207758341 - AluJb SINE Alu 0 312 91 623 206 6 38 chr3 19766245 19766405 -207758173 + L1MC1 LINE L1 5882 6036 -297 546 269 11 11 chr3 19766549 19766731 -207757847 + L1MC1 LINE L1 5408 5589 -744 1543 130 0 0 chr3 19766732 19766955 -207757623 - AluJb SINE Alu 0 312 90 2732 144 31 14 chr3 19766962 19767406 -207757172 + L1MC1 LINE L1 5882 6333 0 324 316 118 66 chr3 19767435 19767707 -207756871 - L2 LINE L2 -94 3178 2893 259 311 0 0 chr3 19767885 19767988 -207756590 + (CGGGG)n Simple_repeat Simple_repeat 2 104 0 508 260 59 19 chr3 19768031 19768323 -207756255 + Charlie4a DNA MER1_type 25 386 -122 306 271 0 0 chr3 19768370 19768488 -207756090 + (CA)n Simple_repeat Simple_repeat 1 118 0 267 31 0 0 chr3 19768790 19768822 -207755756 + (TG)n Simple_repeat Simple_repeat 2 33 0 334 266 13 0 chr3 19769033 19769112 -207755466 - MIR SINE MIR -107 155 76 206 305 131 4 chr3 19769255 19769500 -207755078 + L2 LINE L2 2721 3021 -251 268 183 100 0 chr3 19769608 19769668 -207754910 + L2 LINE L2 3205 3270 -2 194 358 32 0 chr3 19770422 19770517 -207754061 + MIR SINE MIR 80 177 -85 624 319 109 28 chr3 19770840 19771555 -207753023 + L2 LINE L2 2413 3184 -129 205 229 42 0 chr3 19771624 19771672 -207752906 + MIR SINE MIR 88 137 -71 25 0 0 0 chr3 19772613 19772638 -207751940 + GC_rich Low_complexity Low_complexity 1 25 0 584 266 107 0 chr3 19773216 19773385 -207751193 + MIR SINE MIR 39 225 -37 240 254 30 0 chr3 19773624 19773691 -207750887 + MIR SINE MIR 76 144 -118 2035 214 91 14 chr3 19774127 19774425 -207750153 + L1MC3 LINE L1 7171 7445 -340 726 200 0 22 chr3 19774425 19774560 -207750018 + FLAM_C SINE Alu 2 133 0 2035 214 91 14 chr3 19774560 19774832 -207749746 + L1MC3 LINE L1 7445 7785 0 256 331 22 14 chr3 19775693 19775832 -207748746 + L2 LINE L2 2856 2995 -277 439 314 69 40 chr3 19775869 19776216 -207748362 - HERV16 LTR ERVL -4539 457 101 862 273 69 54 chr3 19776218 19776661 -207747917 + MER77 LTR ERV1 292 709 -3 968 243 47 79 chr3 19776661 19777064 -207747514 + MER77-int LTR ERV1 19 408 -3783 349 284 37 9 chr3 19777070 19777179 -207747399 + MER77-int LTR ERV1 327 438 -3753 7032 252 81 69 chr3 19777222 19778206 -207746372 + MER77-int LTR ERV1 1227 2197 -1994 1707 159 65 0 chr3 19778206 19778496 -207746082 - AluJb SINE Alu -3 309 1 7032 252 81 69 chr3 19778496 19779632 -207744946 + MER77-int LTR ERV1 2197 3317 -874 207 0 0 0 chr3 19779632 19779655 -207744923 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2077 88 0 32 chr3 19779655 19779940 -207744638 - AluSx SINE Alu -36 276 1 7032 252 81 69 chr3 19779940 19780460 -207744118 + MER77-int LTR ERV1 3317 3911 -280 2396 81 3 0 chr3 19780460 19780770 -207743808 - AluSp SINE Alu -2 311 1 7032 252 81 69 chr3 19780770 19780999 -207743579 + MER77-int LTR ERV1 3911 4136 -55 235 133 117 33 chr3 19781400 19781460 -207743118 + MER77 LTR ERV1 204 268 -337 279 229 299 7 chr3 19781542 19781686 -207742892 + MER77 LTR ERV1 416 601 -4 180 299 75 0 chr3 19781957 19782024 -207742554 - MIR SINE MIR -117 145 74 308 247 53 9 chr3 19782360 19782497 -207742081 + Charlie8 DNA MER1_type 133 1378 -1039 282 308 51 0 chr3 19782577 19782694 -207741884 + MER112 DNA MER1_type 98 220 -40 258 283 71 0 chr3 19782695 19782794 -207741784 + MIR SINE MIR 24 129 -79 328 284 11 11 chr3 19784102 19784197 -207740381 + MIR SINE MIR 52 146 -62 209 206 43 11 chr3 19784285 19784377 -207740201 + CT-rich Low_complexity Low_complexity 1 95 0 305 190 0 0 chr3 19784527 19784585 -207739993 + MLT1F1 LTR MaLR 234 291 -251 421 243 7 59 chr3 19784629 19784765 -207739813 + MLT1F1 LTR MaLR 430 558 -9 598 286 101 42 chr3 19785416 19785870 -207738708 + L2 LINE L2 2828 3308 -5 273 29 0 0 chr3 19786168 19786202 -207738376 + (TG)n Simple_repeat Simple_repeat 2 35 0 363 360 79 6 chr3 19786410 19786588 -207737990 - MIR SINE MIR -70 192 2 245 289 52 10 chr3 19786727 19786824 -207737754 - MIR SINE MIR -161 101 1 369 0 0 0 chr3 19787582 19787623 -207736955 + (TG)n Simple_repeat Simple_repeat 2 42 0 374 299 112 0 chr3 19787713 19787820 -207736758 - L2 LINE L2 -14 3299 3181 309 386 45 43 chr3 19789447 19790000 -207734578 - L3 LINE CR1 -2 1575 965 207 254 15 15 chr3 19790348 19790415 -207734163 - MIR SINE MIR -63 145 79 537 273 50 0 chr3 19790526 19790665 -207733913 - MIR SINE MIR -88 174 29 252 310 5 49 chr3 19791837 19792021 -207732557 + GA-rich Low_complexity Low_complexity 5 180 0 547 331 95 21 chr3 19793917 19794159 -207730419 - MIR SINE MIR 0 262 3 437 249 190 51 chr3 19794258 19794611 -207729967 + L2 LINE L2 2870 3271 -1 201 260 0 62 chr3 19794872 19794968 -207729610 + (CGGGG)n Simple_repeat Simple_repeat 5 94 0 1183 283 231 5 chr3 19795290 19796292 -207728286 - L2 LINE L2 0 3313 2036 212 314 58 39 chr3 19796846 19797002 -207727576 - L2 LINE L2 -165 3107 2949 289 323 44 13 chr3 19797281 19797439 -207727139 - MIR3 SINE MIR -39 169 7 248 293 0 0 chr3 19797621 19797679 -207726899 - L3 LINE CR1 -106 1471 1414 779 275 25 21 chr3 19797686 19797922 -207726656 - MIR SINE MIR -10 252 16 228 364 8 8 chr3 19798974 19799103 -207725475 - MIR3 SINE MIR -46 162 34 226 347 140 7 chr3 19799152 19799357 -207725221 - MIR3 SINE MIR -15 247 15 518 241 63 46 chr3 19801298 19801472 -207723106 + MER5A DNA MER1_type 13 189 0 330 278 9 19 chr3 19802117 19802225 -207722353 + GA-rich Low_complexity Low_complexity 5 111 0 230 281 12 24 chr3 19802789 19802871 -207721707 - MIR SINE MIR -117 145 65 240 111 0 0 chr3 19803638 19803674 -207720904 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 1707 134 0 119 chr3 19803803 19803935 -207720643 + AluJb SINE Alu 5 151 -151 2015 116 14 3 chr3 19803935 19804227 -207720351 + AluSq SINE Alu 1 295 -18 1707 134 0 119 chr3 19804227 19804430 -207720148 + AluJb SINE Alu 151 300 -2 762 204 79 5 chr3 19804433 19804649 -207719929 + L1ME3 LINE L1 5317 5548 -616 588 111 0 33 chr3 19804650 19804740 -207719838 - AluJ/FLAM SINE Alu -225 87 1 367 243 130 8 chr3 19804741 19804885 -207719693 + L1ME3 LINE L1 5537 5681 -483 1363 236 15 20 chr3 19804922 19805321 -207719257 + MER66A LTR ERV1 42 438 -40 843 231 48 94 chr3 19805338 19805389 -207719189 + L1ME3 LINE L1 5710 5762 -404 2122 92 0 0 chr3 19805389 19805703 -207718875 + AluSg SINE Alu 1 314 0 843 231 48 94 chr3 19805703 19805832 -207718746 + L1ME3 LINE L1 5762 5895 -271 861 173 0 37 chr3 19805832 19805994 -207718584 - FRAM SINE Alu -10 156 1 843 231 48 94 chr3 19805994 19806260 -207718318 + L1ME3 LINE L1 5895 6146 -20 358 258 39 77 chr3 19806265 19806447 -207718131 - MIR SINE MIR 0 262 88 183 328 60 26 chr3 19806547 19806663 -207717915 - L2 LINE L2 -99 3173 3054 610 216 36 30 chr3 19806753 19806920 -207717658 + LTR38 LTR ERV1 3 170 -386 182 274 0 20 chr3 19806980 19807031 -207717547 + MER5B DNA MER1_type 6 55 -123 2057 108 17 0 chr3 19807040 19807328 -207717250 + AluSg SINE Alu 1 293 -17 2524 62 0 0 chr3 19807328 19807636 -207716942 + AluY SINE Alu 1 308 -3 2368 87 0 7 chr3 19807906 19808216 -207716362 + AluY SINE Alu 1 308 -3 708 236 142 79 chr3 19808384 19808743 -207715835 - MLT1H LTR MaLR 0 549 151 3265 108 101 41 chr3 19808743 19809186 -207715392 - MER4A LTR ERV1 -4 596 109 2126 119 0 0 chr3 19809186 19809504 -207715074 + AluSx SINE Alu 1 318 0 3265 108 101 41 chr3 19809504 19809620 -207714958 - MER4A LTR ERV1 -491 109 1 708 236 142 79 chr3 19809620 19809731 -207714847 - MLT1H LTR MaLR -398 151 49 834 171 36 10 chr3 19809737 19809930 -207714648 + L1MB3 LINE L1 5417 5614 -569 2152 112 0 0 chr3 19809931 19810227 -207714351 + AluSx SINE Alu 1 296 -16 429 299 46 23 chr3 19810683 19810857 -207713721 + Charlie8 DNA MER1_type 4 181 -2236 245 290 99 56 chr3 19811142 19811304 -207713274 + L3 LINE CR1 1350 1518 -59 744 172 0 0 chr3 19811994 19812110 -207712468 - FLAM_C SINE Alu -27 116 1 290 291 158 25 chr3 19812974 19813132 -207711446 + MER53 DNA DNA 9 187 -2 21 0 0 0 chr3 19813172 19813193 -207711385 + AT_rich Low_complexity Low_complexity 1 21 0 391 286 84 28 chr3 19813943 19814333 -207710245 - LTR16A1 LTR ERVL 0 457 12 2448 186 35 16 chr3 19814486 19814943 -207709635 + L1MB3 LINE L1 5681 6149 -34 1961 122 31 0 chr3 19814943 19815237 -207709341 + AluSg SINE Alu 1 303 -7 2448 186 35 16 chr3 19815237 19815268 -207709310 + L1MB3 LINE L1 6149 6178 -5 403 199 35 99 chr3 19815598 19815739 -207708839 - MIR SINE MIR -93 169 38 382 373 133 15 chr3 19815758 19816163 -207708415 - L2 LINE L2 -2 3270 2818 878 169 14 0 chr3 19816634 19816782 -207707796 + FRAM SINE Alu 22 171 -5 584 318 96 21 chr3 19818006 19818390 -207706188 + MLT1K LTR MaLR 169 581 -7 765 212 0 0 chr3 19818777 19818956 -207705622 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 333 245 29 36 chr3 19819235 19819374 -207705204 + (CAGAGA)n Simple_repeat Simple_repeat 4 141 0 222 321 73 32 chr3 19819670 19819819 -207704759 + MIR SINE MIR 18 165 -63 752 236 188 6 chr3 19819865 19820217 -207704361 + MLT1K LTR MaLR 166 581 -7 777 191 60 165 chr3 19821034 19821452 -207703126 + MLT1A2 LTR MaLR 1 374 0 409 272 20 104 chr3 19821780 19821836 -207702742 - MER113 DNA MER1_type? -174 347 288 2443 77 0 0 chr3 19821836 19822146 -207702432 + AluY SINE Alu 2 311 0 409 272 20 104 chr3 19822146 19822337 -207702241 - MER113 DNA MER1_type? -233 288 127 2207 117 3 0 chr3 19822337 19822646 -207701932 + AluSx SINE Alu 1 310 -2 409 272 20 104 chr3 19822646 19822695 -207701883 - MER113 DNA MER1_type? -394 127 75 217 301 27 14 chr3 19823441 19823514 -207701064 - MIR SINE MIR -71 191 118 272 274 29 10 chr3 19824123 19824225 -207700353 + MIR SINE MIR 26 129 -79 249 305 57 0 chr3 19824509 19824614 -207699964 + L2 LINE L2 3005 3115 -157 572 304 95 3 chr3 19825200 19825483 -207699095 + L2 LINE L2 2458 2766 -548 1587 134 25 0 chr3 19825505 19825744 -207698834 + AluJo SINE Alu 56 300 -12 653 82 0 0 chr3 19825749 19825834 -207698744 + AluSc SINE Alu 1 85 -224 227 340 120 40 chr3 19826010 19826210 -207698368 + MIR SINE MIR 13 228 -34 612 243 108 46 chr3 19826461 19826766 -207697812 - MER102b DNA MER1_type -15 326 3 184 229 0 0 chr3 19826905 19826940 -207697638 - MIR SINE MIR -62 146 112 198 71 0 0 chr3 19828399 19828427 -207696151 + (TCCG)n Simple_repeat Simple_repeat 3 30 0 23 54 0 0 chr3 19828553 19828590 -207695988 + GC_rich Low_complexity Low_complexity 1 37 0 257 231 22 45 chr3 19829046 19829180 -207695398 + (TCTCTG)n Simple_repeat Simple_repeat 2 132 0 583 268 98 21 chr3 19829538 19829773 -207694805 + L2 LINE L2 2915 3167 -146 628 266 10 69 chr3 19829814 19829963 -207694615 + MIR SINE MIR 70 205 -57 2377 139 3 8 chr3 19829963 19830331 -207694247 - MER47A DNA MER2_type 0 366 1 628 266 10 69 chr3 19830331 19830384 -207694194 + MIR SINE MIR 205 260 -2 546 255 210 5 chr3 19830940 19831140 -207693438 + MIR SINE MIR 22 262 0 212 286 0 0 chr3 19831656 19831705 -207692873 + MER5B DNA MER1_type 1 49 -129 388 293 0 64 chr3 19831739 19831879 -207692699 + MER5B DNA MER1_type 46 176 -2 677 267 87 42 chr3 19831891 19832179 -207692399 + MER115 DNA AcHobo 62 362 -331 234 313 52 0 chr3 19832497 19832612 -207691966 + MLT1J LTR MaLR 99 219 -292 827 264 60 37 chr3 19833005 19833387 -207691191 + MLT1K LTR MaLR 166 556 -32 413 280 63 14 chr3 19833628 19833771 -207690807 - MIR SINE MIR 0 262 113 197 158 26 0 chr3 19834299 19834337 -207690241 - MIR SINE MIR -91 117 79 231 250 0 0 chr3 19834407 19834459 -207690119 + MIR SINE MIR 98 149 -59 1994 116 26 26 chr3 19834591 19834902 -207689676 - AluSx SINE Alu -1 311 1 1445 81 49 0 chr3 19835102 19835327 -207689251 + LTR10A LTR ERV1 326 609 0 513 177 10 0 chr3 19835361 19835457 -207689121 + AluJ/FRAM SINE Alu 216 312 0 331 409 91 17 chr3 19835531 19835761 -207688817 - L1M4 LINE L1 -831 5315 5069 948 248 132 75 chr3 19836096 19836535 -207688043 + LTR16B LTR ERVL 1 464 0 183 292 34 67 chr3 19836642 19836731 -207687847 - MIR SINE MIR -114 148 63 195 343 9 57 chr3 19836968 19837073 -207687505 - L3 LINE CR1 -155 1422 1323 212 435 81 0 chr3 19837170 19837356 -207687222 - L3 LINE CR1 -468 1109 909 835 244 103 4 chr3 19837767 19838001 -207686577 + MIR SINE MIR 6 262 0 428 323 23 0 chr3 19837999 19838129 -207686449 - L2 LINE L2 -6 3266 3134 * 403 283 48 36 chr3 19838224 19838390 -207686188 + MIR SINE MIR 77 244 -18 217 258 159 7 chr3 19838538 19838689 -207685889 - L2 LINE L2 -673 2641 2468 252 59 0 0 chr3 19838695 19838729 -207685849 + (CA)n Simple_repeat Simple_repeat 1 34 0 374 266 57 13 chr3 19838775 19838933 -207685645 - MLT1K LTR MaLR -6 582 418 235 233 41 14 chr3 19839025 19839098 -207685480 - MLT1K LTR MaLR -362 226 152 805 263 122 72 chr3 19839648 19840345 -207684233 - L1ME3 LINE L1 -130 6032 5293 512 350 18 53 chr3 19840358 19840923 -207683655 + L2 LINE L2 2698 3238 -34 327 298 113 8 chr3 19841070 19841194 -207683384 + MIR3 SINE MIR 11 147 -61 191 320 55 23 chr3 19841580 19841708 -207682870 - MIR SINE MIR -70 192 61 253 324 68 10 chr3 19841987 19842092 -207682486 + MIR SINE MIR 40 149 -66 1238 303 55 48 chr3 19842124 19842645 -207681933 + L1ME3A LINE L1 5448 5977 -193 2266 97 0 0 chr3 19842645 19842943 -207681635 + AluSg SINE Alu 1 298 -12 1238 303 55 48 chr3 19842943 19843091 -207681487 + L1ME3A LINE L1 5977 6122 -48 262 266 51 0 chr3 19843409 19843488 -207681090 + LTR16C LTR ERVL 254 336 -155 837 218 13 0 chr3 19843503 19843659 -207680919 - FRAM SINE Alu -18 158 1 460 203 93 0 chr3 19843660 19843778 -207680800 + LTR16C LTR ERVL 345 473 -18 227 367 75 7 chr3 19845358 19845604 -207678974 + L1M4 LINE L1 3685 3957 -2189 2245 117 3 0 chr3 19845604 19845913 -207678665 + AluSx SINE Alu 1 310 -2 227 367 75 7 chr3 19845913 19845971 -207678607 + L1M4 LINE L1 3957 4010 -2136 3401 125 7 22 chr3 19846272 19846809 -207677769 - L1MB3 LINE L1 0 6183 5655 267 228 211 24 chr3 19847046 19847169 -207677409 + Charlie8 DNA MER1_type 92 237 -2180 258 188 339 12 chr3 19847319 19847402 -207677176 - MIR SINE MIR -58 150 44 379 340 221 17 chr3 19847512 19847995 -207676583 + L2 LINE L2 2659 3272 0 344 253 0 20 chr3 19847997 19848096 -207676482 + GA-rich Low_complexity Low_complexity 4 100 0 347 242 6 0 chr3 19848101 19848279 -207676299 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 250 318 0 19 chr3 19848282 19848389 -207676189 + GA-rich Low_complexity Low_complexity 4 108 0 211 304 14 0 chr3 19848784 19848853 -207675725 + G-rich Low_complexity Low_complexity 3 72 0 1710 254 106 22 chr3 19849434 19849588 -207674990 - MER97a DNA MER1_type? -205 689 549 2090 115 23 0 chr3 19849588 19849893 -207674685 - AluSp SINE Alu -1 312 1 1710 254 106 22 chr3 19849893 19850121 -207674457 - MER97a DNA MER1_type? -345 549 341 2209 95 10 0 chr3 19850121 19850416 -207674162 + AluSp SINE Alu 1 298 -15 1710 254 106 22 chr3 19850416 19850666 -207673912 - MER97a DNA MER1_type? -553 341 3 468 207 0 41 chr3 19851672 19851793 -207672785 + MER53 DNA DNA 1 116 -73 2854 195 26 27 chr3 19851820 19852351 -207672227 - Charlie1a DNA MER1_type -1343 1418 888 2050 134 0 3 chr3 19852351 19852650 -207671928 - AluSx SINE Alu -12 300 3 2041 144 0 0 chr3 19852652 19852950 -207671628 - AluSx SINE Alu -14 298 1 2854 195 26 27 chr3 19852950 19853144 -207671434 - Charlie1a DNA MER1_type -1874 887 691 527 128 0 0 chr3 19853163 19853241 -207671337 - AluJo SINE Alu -8 304 227 957 124 85 13 chr3 19853241 19853394 -207671184 - AluJo SINE Alu -148 164 1 1729 237 143 3 chr3 19853394 19853973 -207670605 - Charlie1a DNA MER1_type -795 660 1 282 255 41 20 chr3 19853984 19854082 -207670496 + L2 LINE L2 3171 3270 -43 580 313 170 12 chr3 19854224 19854566 -207670012 - L2 LINE L2 -3 3310 2915 355 205 150 50 chr3 19854658 19854858 -207669720 - L2 LINE L2 -100 3213 2994 331 245 78 10 chr3 19854868 19854970 -207669608 - MIR SINE MIR -113 149 41 478 230 20 0 chr3 19855130 19855230 -207669348 - MIR SINE MIR -77 185 84 1999 165 16 69 chr3 19855335 19855399 -207669179 - L1MB7 LINE L1 0 6184 6118 2847 82 3 8 chr3 19855399 19855765 -207668813 + THE1B LTR MaLR 1 364 0 1999 165 16 69 chr3 19855765 19856190 -207668388 - L1MB7 LINE L1 -66 6118 5721 192 224 104 0 chr3 19856846 19856913 -207667665 - MIR SINE MIR -77 131 58 266 278 55 46 chr3 19857027 19857136 -207667442 - MIR3 SINE MIR -51 157 47 508 255 47 18 chr3 19857252 19857447 -207667131 - MIR SINE MIR -15 247 46 284 214 27 104 chr3 19857505 19857692 -207666886 + L2 LINE L2 2846 3066 -206 419 281 96 0 chr3 19859351 19859497 -207665081 - MIR SINE MIR -100 162 3 689 236 7 0 chr3 19860611 19860751 -207663827 - MIR SINE MIR -36 226 86 312 248 89 10 chr3 19861362 19861463 -207663115 - MIR SINE MIR -63 145 37 297 364 176 0 chr3 19861501 19861688 -207662890 - MIR SINE MIR -15 247 28 839 182 0 11 chr3 19862427 19862603 -207661975 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 1089 105 0 0 chr3 19862634 19862796 -207661782 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 903 191 0 0 chr3 19862827 19863237 -207661341 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 187 200 40 20 chr3 19863478 19863528 -207661050 + MIR SINE MIR 77 127 -135 345 266 18 18 chr3 19864537 19864650 -207659928 + MIR SINE MIR 24 136 -72 282 352 84 60 chr3 19864667 19864917 -207659661 - MIR SINE MIR 0 262 7 1047 173 4 0 chr3 19865334 19865850 -207658728 + (TGGA)n Simple_repeat Simple_repeat 1 518 0 394 266 76 65 chr3 19866791 19866975 -207657603 + MLT1J LTR MaLR 229 414 -97 1791 244 91 33 chr3 19867006 19867523 -207657055 + MLT1H LTR MaLR 2 548 -1 303 283 51 43 chr3 19867543 19867681 -207656897 - MIR SINE MIR -16 246 108 2277 68 7 3 chr3 19867687 19867979 -207656599 + AluY SINE Alu 1 293 -18 401 256 158 10 chr3 19867984 19868179 -207656399 + HAL1 LINE L1 1040 1224 -1283 558 212 0 18 chr3 19868482 19868595 -207655983 + MLT1J LTR MaLR 79 189 -322 2901 167 8 14 chr3 19868621 19869113 -207655465 + L1MB3 LINE L1 5692 6180 -3 1537 100 38 128 chr3 19869121 19869470 -207655108 + AluYb8 SINE Alu 1 320 0 820 287 149 12 chr3 19870026 19870536 -207654042 + L2 LINE L2 2737 3309 -4 434 333 44 7 chr3 19871489 19871624 -207652954 + MIR3 SINE MIR 16 155 -53 789 268 155 16 chr3 19872372 19872753 -207651825 + LTR16A1 LTR ERVL 22 455 -2 2113 117 17 82 chr3 19872879 19873082 -207651496 + Tigger2 DNA MER2_type 2334 2549 -169 2195 117 0 0 chr3 19873082 19873390 -207651188 + AluSg SINE Alu 1 308 -2 2113 117 17 82 chr3 19873390 19873415 -207651163 + Tigger2 DNA MER2_type 2549 2574 -144 2162 99 0 3 chr3 19873415 19873709 -207650869 + AluSp SINE Alu 1 293 -20 2113 117 17 82 chr3 19873709 19873891 -207650687 + Tigger2 DNA MER2_type 2574 2718 0 375 346 64 26 chr3 19873926 19874160 -207650418 + L1M4 LINE L1 5078 5320 -826 1270 146 131 44 chr3 19874169 19874444 -207650134 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr3 19875070 19875097 -207649481 + AT_rich Low_complexity Low_complexity 1 27 0 7569 40 6 0 chr3 19875744 19877130 -207647448 + L1PA5 LINE L1 4765 6154 0 301 320 92 45 chr3 19877133 19877157 -207647421 + L1M4 LINE L1 4145 4166 -1980 2143 105 3 19 chr3 19877157 19877472 -207647106 + AluSg SINE Alu 1 310 0 301 320 92 45 chr3 19877472 19878165 -207646413 + L1M4 LINE L1 4166 4896 -1250 1355 199 29 0 chr3 19878294 19878566 -207646012 + AluJo SINE Alu 21 300 -12 445 235 101 8 chr3 19878628 19878747 -207645831 + L2 LINE L2 3180 3309 -4 281 352 62 6 chr3 19878939 19879115 -207645463 - L3 LINE CR1 -59 1518 1333 395 205 21 42 chr3 19879344 19879452 -207645126 + L1MA4A LINE L1 6044 6279 -7 2368 82 0 13 chr3 19879452 19879769 -207644809 + AluSq SINE Alu 1 313 0 477 47 0 0 chr3 19880286 19880350 -207644228 + (TC)n Simple_repeat Simple_repeat 2 65 0 232 254 154 18 chr3 19880357 19880467 -207644111 + L2 LINE L2 2094 2218 -1096 431 258 153 59 chr3 19880748 19881173 -207643405 + L2 LINE L2 2632 3101 -212 352 329 75 62 chr3 19881359 19881681 -207642897 + L2 LINE L2 2927 3252 -20 219 377 24 12 chr3 19881699 19881866 -207642712 - MIR SINE MIR -44 218 50 294 280 43 0 chr3 19881975 19882068 -207642510 + MIR SINE MIR 67 163 -99 1842 160 0 0 chr3 19883136 19883446 -207641132 + AluJo SINE Alu 1 310 0 50 18 0 0 chr3 19883446 19883503 -207641075 + AT_rich Low_complexity Low_complexity 1 57 0 1437 172 56 12 chr3 19883503 19883822 -207640756 + L1MB3 LINE L1 5851 6183 0 267 317 24 37 chr3 19883845 19884009 -207640569 + L1MC/D LINE L1 5619 5780 -341 1106 172 9 14 chr3 19884011 19884226 -207640352 + AluJb SINE Alu 83 296 -16 241 279 86 36 chr3 19884229 19884369 -207640209 + L1MC/D LINE L1 5776 5922 -1886 255 331 30 24 chr3 19885248 19885414 -207639164 - MIR SINE MIR -78 184 18 199 255 0 0 chr3 19885768 19885815 -207638763 - MIR SINE MIR -72 136 90 202 240 0 125 chr3 19886584 19886636 -207637942 - MIR SINE MIR -69 193 157 2347 90 0 0 chr3 19886636 19886935 -207637643 - AluSg SINE Alu -11 299 1 202 240 0 125 chr3 19886935 19886978 -207637600 - MIR SINE MIR -105 157 110 1205 186 237 17 chr3 19887208 19887558 -207637020 + MLT1H LTR MaLR 64 490 -59 2334 256 33 17 chr3 19887571 19888043 -207636535 + L1M4 LINE L1 4335 4825 -1321 2157 106 10 10 chr3 19888043 19888355 -207636223 + AluSq SINE Alu 1 312 -1 2334 256 33 17 chr3 19888355 19888644 -207635934 + L1M4 LINE L1 4825 5108 -1038 537 201 67 0 chr3 19888642 19888776 -207635802 + L1ME3 LINE L1 4686 4828 -1318 * 804 115 0 0 chr3 19888781 19888894 -207635684 + AluSq/x SINE Alu 1 113 -200 1687 257 97 19 chr3 19889016 19889739 -207634839 + L1ME3 LINE L1 5170 5951 -211 2121 122 0 0 chr3 19889743 19890039 -207634539 + AluSx SINE Alu 1 296 -16 850 147 0 0 chr3 19890060 19890196 -207634382 + FLAM_C SINE Alu 1 136 -7 642 274 33 9 chr3 19890198 19890413 -207634165 + L1ME3 LINE L1 5941 6160 -2 311 331 41 58 chr3 19890484 19890726 -207633852 + L1MC4 LINE L1 7596 7833 -209 1723 167 10 3 chr3 19891964 19892269 -207632309 - Tigger3b DNA MER2_type 0 1231 925 2611 153 91 53 chr3 19892276 19892858 -207631720 - MER4B LTR ERV1 -6 604 1 * 3502 114 42 91 chr3 19892858 19893196 -207631382 - Tigger3b DNA MER2_type -2100 928 575 2163 111 10 0 chr3 19893196 19893503 -207631075 - AluSx SINE Alu -2 310 1 3502 114 42 91 chr3 19893503 19893560 -207631018 - Tigger3b DNA MER2_type -2453 575 517 1851 133 6 41 chr3 19893560 19893876 -207630702 + AluSx SINE Alu 1 305 -7 3502 114 42 91 chr3 19893876 19893887 -207630691 - Tigger3b DNA MER2_type -2511 517 507 2271 95 0 0 chr3 19893887 19894193 -207630385 + AluSg SINE Alu 2 307 -3 3502 114 42 91 chr3 19894193 19894546 -207630032 - Tigger3b DNA MER2_type -2521 507 205 1078 116 0 52 chr3 19894550 19894746 -207629832 - AluSp SINE Alu 0 310 124 747 156 162 52 chr3 19894746 19894919 -207629659 - Tigger3b DNA MER2_type -1039 192 1 264 313 12 0 chr3 19895416 19895499 -207629079 + L2 LINE L2 2240 2323 -991 300 211 0 0 chr3 19896617 19896674 -207627904 - Tigger3b DNA MER2_type -1173 58 2 538 309 28 11 chr3 19896970 19897148 -207627430 + MIR SINE MIR 70 250 -12 447 244 69 15 chr3 19897619 19897750 -207626828 - MIR SINE MIR -66 196 59 456 302 27 7 chr3 19898299 19898448 -207626130 - MIR SINE MIR -87 175 24 359 204 45 11 chr3 19898747 19898835 -207625743 + MLT1H LTR MaLR 116 206 -343 520 253 211 38 chr3 19899299 19899536 -207625042 + MLT1H LTR MaLR 209 486 -63 451 225 139 43 chr3 19899812 19899999 -207624579 + L2 LINE L2 3108 3312 -1 261 311 25 0 chr3 19900215 19900334 -207624244 + L1ME3A LINE L1 5729 5850 -314 539 235 162 11 chr3 19900337 19900516 -207624062 + L1ME3A LINE L1 5916 6121 -49 575 333 13 10 chr3 19900581 19900843 -207623735 + L1MC4a LINE L1 5666 5817 -345 1021 209 26 17 chr3 19900881 19901111 -207623467 + Charlie1 DNA MER1_type 1 232 -2529 3364 197 57 27 chr3 19901118 19901300 -207623278 + L1MB7 LINE L1 5382 5557 -627 2259 98 0 0 chr3 19901300 19901596 -207622982 - AluSp SINE Alu -17 296 1 3364 197 57 27 chr3 19901596 19902183 -207622395 + L1MB7 LINE L1 5557 6174 -10 776 231 174 22 chr3 19902784 19903129 -207621449 + L2 LINE L2 2684 2975 -338 2326 63 0 17 chr3 19903129 19903430 -207621148 - AluSx SINE Alu -11 301 6 776 231 174 22 chr3 19903430 19903633 -207620945 + L2 LINE L2 2975 3313 0 195 147 0 0 chr3 19903766 19903800 -207620778 + L2 LINE L2 3016 3049 -223 381 245 71 20 chr3 19905146 19905244 -207619334 + MIR SINE MIR 112 214 -48 242 244 185 67 chr3 19905318 19905453 -207619125 - L2 LINE L2 -9 3263 3113 227 362 161 0 chr3 19906262 19906411 -207618167 - MIR SINE MIR -34 228 56 2099 92 34 0 chr3 19906454 19906749 -207617829 - AluSq SINE Alu -8 305 1 451 313 50 72 chr3 19906768 19907184 -207617394 - L2 LINE L2 -24 3248 2842 200 297 53 42 chr3 19907850 19907997 -207616581 + MIR SINE MIR 5 141 -67 366 243 47 47 chr3 19908194 19908342 -207616236 + Charlie8 DNA MER1_type 84 231 -2186 210 143 0 0 chr3 19909150 19909185 -207615393 + (TCC)n Simple_repeat Simple_repeat 2 36 0 250 336 30 71 chr3 19911440 19911708 -207612870 - L2 LINE L2 -26 3287 3031 309 262 168 16 chr3 19911964 19912155 -207612423 - L2 LINE L2 -731 2583 2364 1635 182 35 0 chr3 19912392 19912678 -207611900 - AluJo SINE Alu -11 301 6 1179 131 11 0 chr3 19912712 19912903 -207611675 + AluSx SINE Alu 1 193 -119 251 278 55 46 chr3 19913231 19913340 -207611238 - MIR3 SINE MIR -51 157 47 296 235 91 45 chr3 19913456 19913588 -207610990 - MIR SINE MIR -15 247 110 1382 122 14 5 chr3 19913725 19913938 -207610640 + AluSq SINE Alu 70 284 -29 198 71 0 0 chr3 19914103 19914131 -207610447 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2098 115 3 3 chr3 19914168 19914464 -207610114 - AluSq SINE Alu -17 296 1 320 335 125 45 chr3 19914542 19914766 -207609812 - L3 LINE CR1 -94 1483 1242 325 93 17 2 chr3 19914903 19914960 -207609618 - MLT2B1 LTR ERVL 0 464 415 1545 180 55 3 chr3 19914960 19915249 -207609329 + MER7A DNA MER2_type 2 303 -43 1363 212 21 153 chr3 19915279 19915704 -207608874 - MLT2B1 LTR ERVL -41 373 5 580 256 38 101 chr3 19915708 19915889 -207608689 - L1M4 LINE L1 -3132 3014 2823 4179 121 28 35 chr3 19915889 19915939 -207608639 - L1MB3 LINE L1 -2 6181 6132 1016 211 0 0 chr3 19915939 19916110 -207608468 - FAM SINE Alu -4 171 1 2007 103 0 60 chr3 19916119 19916438 -207608140 - AluSq SINE Alu -13 300 1 4179 121 28 35 chr3 19916438 19917087 -207607491 - L1MB3 LINE L1 -59 6124 5477 580 256 38 101 chr3 19917087 19917127 -207607451 - L1M4 LINE L1 -3323 2823 2782 2040 131 0 10 chr3 19917127 19917464 -207607114 + AluSx SINE Alu 1 312 0 580 256 38 101 chr3 19917464 19917497 -207607081 - L1M4 LINE L1 -3364 2782 2748 3501 68 11 7 chr3 19917497 19917939 -207606639 - MLT2A1 LTR ERVL 0 444 1 580 256 38 101 chr3 19917939 19918206 -207606372 - L1M4 LINE L1 -3398 2748 2524 * 2728 234 62 68 chr3 19918195 19918273 -207606305 + L1ME LINE L1 3347 3424 -2722 2438 70 0 10 chr3 19918273 19918574 -207606004 + AluY SINE Alu 1 298 -13 2728 234 62 68 chr3 19918574 19918785 -207605793 + L1ME LINE L1 3424 3635 -2511 560 128 0 0 chr3 19918785 19918871 -207605707 - FLAM_C SINE Alu -2 141 56 867 165 0 0 chr3 19918792 19918925 -207605653 - FLAM_A SINE Alu 0 133 1 2728 234 62 68 chr3 19918925 19919086 -207605492 + L1ME LINE L1 3689 3850 -2296 2302 114 0 0 chr3 19919086 19919385 -207605193 + AluSx SINE Alu 1 299 -13 2728 234 62 68 chr3 19919385 19919454 -207605124 + L1ME LINE L1 3850 3918 -2228 2266 123 7 0 chr3 19919454 19919756 -207604822 + AluSx SINE Alu 1 304 -8 2728 234 62 68 chr3 19919756 19920370 -207604208 + L1ME LINE L1 3918 4485 -1661 2416 85 0 16 chr3 19920370 19920686 -207603892 - AluY SINE Alu 0 311 1 2728 234 62 68 chr3 19920686 19920731 -207603847 + L1ME LINE L1 4485 4529 -1617 4419 125 19 126 chr3 19920736 19922283 -207602295 - pTR5 LTR ERV1 0 2606 1524 2301 100 3 17 chr3 19922293 19922593 -207601985 - AluSp SINE Alu -15 298 3 1483 213 133 75 chr3 19922597 19922710 -207601868 + L1ME LINE L1 4535 4640 -1526 1885 151 13 10 chr3 19922710 19923008 -207601570 - AluJb SINE Alu -13 299 1 1483 213 133 75 chr3 19923008 19923086 -207601492 + L1ME LINE L1 4640 4712 -1454 1800 132 0 0 chr3 19923086 19923336 -207601242 + AluSq SINE Alu 64 313 0 1483 213 133 75 chr3 19923336 19923574 -207601004 + L1ME LINE L1 4712 4935 -1231 2077 105 0 41 chr3 19923574 19923908 -207600670 - AluSx SINE Alu 0 312 1 1483 213 133 75 chr3 19923908 19924136 -207600442 + L1ME LINE L1 4935 5148 -1018 1661 183 3 29 chr3 19924136 19924442 -207600136 + AluJb SINE Alu 13 310 -2 1483 213 133 75 chr3 19924442 19924497 -207600081 + L1ME LINE L1 5148 5198 -968 1465 82 77 0 chr3 19924497 19924533 -207600045 + AluY SINE Alu 84 116 -195 612 0 0 0 chr3 19924533 19924601 -207599977 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 1465 82 77 0 chr3 19924601 19924760 -207599818 + AluY SINE Alu 116 294 -17 1483 213 133 75 chr3 19924760 19924820 -207599758 + L1ME LINE L1 5198 5253 -913 2389 100 6 0 chr3 19924820 19925131 -207599447 + AluSq SINE Alu 1 313 0 1483 213 133 75 chr3 19925131 19925193 -207599385 + L1ME LINE L1 5253 5477 -689 1695 136 0 118 chr3 19925195 19925330 -207599248 + AluJb SINE Alu 2 75 -227 2112 116 14 3 chr3 19925330 19925622 -207598956 + AluSq SINE Alu 1 295 -18 1695 136 0 118 chr3 19925622 19925825 -207598753 + AluJb SINE Alu 75 300 -2 799 204 79 5 chr3 19925828 19926044 -207598534 + L1ME3 LINE L1 5317 5548 -616 594 112 0 34 chr3 19926045 19926134 -207598444 - AluS SINE Alu -225 87 2 395 216 156 9 chr3 19926136 19926268 -207598310 + L1ME3 LINE L1 5537 5685 -477 1334 243 17 19 chr3 19926305 19926716 -207597862 + MER66A LTR ERV1 29 438 -40 913 206 35 99 chr3 19926733 19926784 -207597794 + L1ME3 LINE L1 5713 5766 -396 2227 89 0 0 chr3 19926784 19927098 -207597480 + AluSg SINE Alu 1 314 0 913 206 35 99 chr3 19927098 19927227 -207597351 + L1ME3 LINE L1 5766 5902 -260 847 173 0 37 chr3 19927227 19927389 -207597189 - FRAM SINE Alu -10 156 1 913 206 35 99 chr3 19927389 19927580 -207596998 + L1ME3 LINE L1 5902 6062 -100 385 253 39 77 chr3 19927660 19927842 -207596736 - MIR SINE MIR 0 262 88 637 216 36 30 chr3 19928148 19928315 -207596263 + LTR38 LTR ERV1 3 170 -386 189 218 39 115 chr3 19928373 19928435 -207596143 + MER5B DNA MER1_type 1 66 -112 2163 107 17 0 chr3 19928435 19928725 -207595853 + AluSg SINE Alu 1 295 -15 2639 59 0 0 chr3 19928725 19929031 -207595547 + AluY SINE Alu 1 306 -5 189 218 39 115 chr3 19929031 19929045 -207595533 + MER5B DNA MER1_type 64 72 -106 2494 87 0 6 chr3 19929303 19929614 -207594964 + AluY SINE Alu 1 309 -2 724 219 153 89 chr3 19929781 19930140 -207594438 - MLT1H LTR MaLR 0 549 151 3206 108 101 41 chr3 19930140 19930583 -207593995 - MER4A LTR ERV1 -4 596 109 2209 119 0 0 chr3 19930583 19930901 -207593677 + AluSx SINE Alu 1 318 0 3206 108 101 41 chr3 19930901 19931017 -207593561 - MER4A LTR ERV1 -491 109 1 724 219 153 89 chr3 19931017 19931128 -207593450 - MLT1H LTR MaLR -398 151 49 3352 154 42 32 chr3 19931128 19931328 -207593250 + L1MB3 LINE L1 5411 5608 -575 2223 102 24 0 chr3 19931328 19931622 -207592956 + AluSq SINE Alu 1 301 -12 3352 154 42 32 chr3 19931622 19931924 -207592654 + L1MB3 LINE L1 5608 5925 -258 2566 82 0 0 chr3 19931924 19932230 -207592348 - AluSg SINE Alu -4 306 1 3352 154 42 32 chr3 19932230 19932442 -207592136 + L1MB3 LINE L1 5925 6133 -50 304 86 0 86 chr3 19932449 19932507 -207592071 + L1MA9 LINE L1 5995 6047 -244 245 138 17 0 chr3 19932512 19932570 -207592008 + L1MB3 LINE L1 6125 6183 0 957 206 6 0 chr3 19932703 19932873 -207591705 - AluJb SINE Alu -5 307 137 1442 155 86 52 chr3 19933316 19933607 -207590971 - AluJo SINE Alu -9 303 3 1817 168 3 16 chr3 19936729 19937032 -207587546 + AluJo SINE Alu 3 301 -11 2138 119 7 0 chr3 19937032 19937325 -207587253 + AluSp SINE Alu 1 295 -18 293 271 10 42 chr3 19937422 19937518 -207587060 - MIR SINE MIR -61 201 109 226 181 368 15 chr3 19938288 19938421 -207586157 - MLT1K LTR MaLR -22 566 387 1764 128 69 11 chr3 19939053 19939327 -207585251 - AluJb SINE Alu -22 290 1 514 241 25 16 chr3 19939382 19939533 -207585045 - MIR3 SINE MIR -79 129 3 871 148 32 32 chr3 19939573 19939762 -207584816 - MER53 DNA DNA 0 189 1 380 252 29 10 chr3 19939794 19939897 -207584681 - MIR SINE MIR -83 125 21 306 375 7 21 chr3 19940211 19940355 -207584223 + MIR3 SINE MIR 42 183 -25 1937 119 72 0 chr3 19940778 19941056 -207583522 + AluSx SINE Alu 1 298 -14 476 253 157 64 chr3 19941086 19941494 -207583084 - LTR33A LTR ERVL -1 522 77 3797 173 37 62 chr3 19942302 19942734 -207581844 + L1MB3 LINE L1 4992 5433 -750 2022 127 0 40 chr3 19942734 19943058 -207581520 + AluSx SINE Alu 1 311 -1 3797 173 37 62 chr3 19943058 19943705 -207580873 + L1MB3 LINE L1 5433 6033 -150 2357 107 3 0 chr3 19943705 19944014 -207580564 + AluSx SINE Alu 1 310 -2 3797 173 37 62 chr3 19944014 19944134 -207580444 + L1MB3 LINE L1 6033 6154 -29 2045 108 34 7 chr3 19944135 19944430 -207580148 - AluSq SINE Alu -10 303 1 303 28 0 0 chr3 19944438 19944474 -207580104 + (TG)n Simple_repeat Simple_repeat 1 36 0 1176 174 14 33 chr3 19944474 19944744 -207579834 - AluSq SINE Alu -31 282 18 2223 100 0 19 chr3 19945054 19945364 -207579214 + AluSx SINE Alu 1 304 -8 2402 97 3 0 chr3 19945699 19946010 -207578568 - AluSp SINE Alu -1 312 1 376 272 76 49 chr3 19946083 19946267 -207578311 - L1ME4a LINE L1 -7 6114 5926 2156 121 0 3 chr3 19946299 19946604 -207577974 + AluSg1 SINE Alu 1 304 -5 268 246 0 0 chr3 19947126 19947183 -207577395 + LTR33A LTR ERVL 467 523 0 22 35 0 0 chr3 19947259 19947288 -207577290 + AT_rich Low_complexity Low_complexity 1 29 0 1591 150 81 0 chr3 19947443 19947690 -207576888 - AluJo SINE Alu -45 267 1 2803 148 3 61 chr3 19947692 19948202 -207576376 - L1ME4a LINE L1 -362 5822 5284 2084 139 0 19 chr3 19948202 19948518 -207576060 - AluSx SINE Alu -2 310 1 2803 148 3 61 chr3 19948518 19948529 -207576049 - L1ME4a LINE L1 -900 5284 5333 2516 73 3 0 chr3 19948529 19948832 -207575746 - AluSp SINE Alu -9 304 1 2803 148 3 61 chr3 19948832 19948884 -207575694 - L1ME4a LINE L1 -850 5334 5281 261 214 54 0 chr3 19948900 19948956 -207575622 + MIR SINE MIR 186 244 -18 417 252 53 13 chr3 19948959 19949110 -207575468 - MER112 DNA MER1_type -102 158 2 784 244 71 10 chr3 19949178 19949458 -207575120 + MER46C DNA MER2_type 1 298 -40 1092 234 69 15 chr3 19949458 19949792 -207574786 - LTR48B LTR ERV1 0 644 293 1060 88 7 0 chr3 19949795 19949943 -207574635 + MER41B LTR ERV1 1 149 -486 5395 69 18 7 chr3 19949943 19950627 -207573951 - LTR8 LTR ERV1 0 691 1 8256 52 4 25 chr3 19950627 19951076 -207573502 - HUERS-P1 LTR ERV1 0 6263 5806 2155 130 3 0 chr3 19951076 19951398 -207573180 - AluSx SINE Alu 0 312 1 8256 52 4 25 chr3 19951398 19952054 -207572524 - HUERS-P1 LTR ERV1 -457 5806 5182 329 176 0 68 chr3 19952064 19952138 -207572440 - L1MCa LINE L1 -4363 2063 1995 * 355 221 0 0 chr3 19952118 19952186 -207572392 - L1MC4 LINE L1 -1339 6703 6636 1249 205 31 14 chr3 19952320 19952613 -207571965 + L1 LINE L1 3950 4247 -1899 351 0 0 0 chr3 19952615 19952654 -207571924 + (CA)n Simple_repeat Simple_repeat 2 40 0 2155 115 7 3 chr3 19952674 19952969 -207571609 + AluSc SINE Alu 1 296 -13 415 257 0 9 chr3 19952969 19953082 -207571496 - L1M4 LINE L1 -1500 4646 4535 2301 100 3 17 chr3 19953086 19953386 -207571192 + AluSp SINE Alu 3 298 -15 4419 125 19 126 chr3 19953396 19954943 -207569635 + pTR5 LTR ERV1 742 2606 0 2294 109 0 10 chr3 19954993 19955305 -207569273 + AluY SINE Alu 1 309 -2 2288 99 0 3 chr3 19955330 19955624 -207568954 + AluSp SINE Alu 1 293 -20 1087 154 16 0 chr3 19955624 19955806 -207568772 + Tigger2 DNA MER2_type 2524 2708 -10 337 329 77 39 chr3 19955841 19956075 -207568503 + L1M4 LINE L1 5078 5320 -826 1368 146 131 44 chr3 19956084 19956359 -207568219 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr3 19956985 19957012 -207567566 + AT_rich Low_complexity Low_complexity 1 27 0 191 281 35 18 chr3 19957433 19957490 -207567088 + MIR SINE MIR 94 151 -111 253 319 19 44 chr3 19957546 19957706 -207566872 + L1M4 LINE L1 4003 4158 -1988 5277 46 11 0 chr3 19957716 19958816 -207565762 + L1PA5 LINE L1 4821 5929 -225 699 306 64 30 chr3 20059309 20059574 -207465004 + HERV16 LTR ERVL 1229 1502 -3494 1988 132 0 7 chr3 20059595 20059899 -207464679 - AluSx SINE Alu -10 302 1 1171 282 34 8 chr3 20059915 20060270 -207464308 + HERV16 LTR ERVL 2315 2678 -2318 249 324 0 10 chr3 20060380 20060482 -207464096 + AluSp SINE Alu 20 120 -183 270 0 0 0 chr3 20060682 20060712 -207463866 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr3 20060883 20060905 -207463673 + AT_rich Low_complexity Low_complexity 1 22 0 188 65 0 32 chr3 20061065 20061096 -207463482 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2061 91 11 0 chr3 20061098 20061374 -207463204 - AluSg SINE Alu -31 279 1 295 185 0 0 chr3 20061374 20061428 -207463150 - Alu SINE Alu -4 298 245 671 171 0 9 chr3 20061430 20061541 -207463037 - AluJo/FLAM SINE Alu -201 111 2 311 364 13 46 chr3 20061546 20061628 -207462950 + L2 LINE L2 3122 3198 -74 2209 108 3 0 chr3 20061628 20061933 -207462645 - AluSg SINE Alu -4 306 1 311 364 13 46 chr3 20061933 20062001 -207462577 + L2 LINE L2 3198 3267 -5 23 0 0 0 chr3 20062301 20062324 -207462254 + AT_rich Low_complexity Low_complexity 1 23 0 2153 99 3 7 chr3 20062334 20062637 -207461941 + AluSg SINE Alu 1 302 -8 1677 123 0 0 chr3 20062653 20062897 -207461681 + AluSg SINE Alu 54 297 -13 784 60 10 0 chr3 20063099 20063199 -207461379 - AluSc SINE Alu -207 102 2 830 146 8 0 chr3 20063228 20063358 -207461220 + AluSg SINE Alu 2 132 -178 720 135 10 0 chr3 20063357 20063461 -207461117 - AluJo/FLAM SINE Alu -205 107 3 * 433 175 0 12 chr3 20063468 20063548 -207461030 - L1M4 LINE L1 -1034 5112 5034 2205 97 10 0 chr3 20063550 20063860 -207460718 - AluSq SINE Alu 0 313 1 1116 169 9 35 chr3 20063926 20064157 -207460421 + AluJo SINE Alu 85 309 -3 625 158 0 10 chr3 20064161 20064262 -207460316 + LTR44 LTR ERV1 1 100 -419 1477 138 47 25 chr3 20064263 20064539 -207460039 + AluJb SINE Alu 18 299 -13 625 91 11 0 chr3 20064565 20064653 -207459925 + AluY SINE Alu 215 303 -8 2207 91 3 3 chr3 20064658 20064956 -207459622 - AluSp SINE Alu -15 298 1 1772 122 86 118 chr3 20064976 20065191 -207459387 + LTR44 LTR ERV1 101 321 -198 1302 189 44 37 chr3 20065191 20065322 -207459256 + AluJo SINE Alu 2 131 -171 2226 82 14 0 chr3 20065322 20065615 -207458963 + AluSp SINE Alu 1 297 -16 1302 189 44 37 chr3 20065615 20065779 -207458799 + AluJo SINE Alu 131 299 -3 1984 98 0 73 chr3 20065780 20065934 -207458644 + AluSq SINE Alu 2 123 -190 2034 75 7 4 chr3 20065934 20066212 -207458366 + AluY SINE Alu 21 299 -12 1984 98 0 73 chr3 20066212 20066374 -207458204 + AluSq SINE Alu 123 295 -18 1772 122 86 118 chr3 20066374 20066449 -207458129 + LTR44 LTR ERV1 321 397 -122 1933 68 0 36 chr3 20066449 20066728 -207457850 + AluY SINE Alu 34 302 -9 2049 102 20 7 chr3 20066733 20067028 -207457550 + AluSx SINE Alu 1 299 -13 1772 122 86 118 chr3 20067028 20067161 -207457417 + LTR44 LTR ERV1 401 519 0 1616 157 43 33 chr3 20067305 20067450 -207457128 + AluJb SINE Alu 1 143 -169 2307 72 3 0 chr3 20067450 20067743 -207456835 + AluSg SINE Alu 1 294 -16 1616 157 43 33 chr3 20067743 20067896 -207456682 + AluJb SINE Alu 143 302 -10 304 183 0 0 chr3 20067929 20067989 -207456589 - Alu SINE Alu -2 300 241 422 99 49 12 chr3 20068107 20068188 -207456390 + AluSc SINE Alu 206 289 -20 755 133 8 16 chr3 20068203 20068331 -207456247 + L1MB3 LINE L1 5601 5727 -456 816 157 17 47 chr3 20068338 20068510 -207456068 - LTR37A LTR ERV1 -242 184 18 1810 170 99 7 chr3 20068742 20069123 -207455455 + L1MB3 LINE L1 5738 6145 -57 2120 125 0 0 chr3 20069245 20069556 -207455022 + AluSx SINE Alu 1 311 -1 540 196 93 0 chr3 20069698 20069805 -207454773 + FLAM_C SINE Alu 2 118 -25 2772 159 91 8 chr3 20069846 20070361 -207454217 + MER89 LTR ERV1 2 559 0 2439 55 0 0 chr3 20070832 20071125 -207453453 + AluY SINE Alu 1 293 -18 2142 81 10 0 chr3 20071619 20071916 -207452662 + AluSx SINE Alu 5 304 -8 2102 127 3 7 chr3 20071992 20072300 -207452278 + AluSx SINE Alu 1 307 -5 1692 166 7 10 chr3 20072327 20072635 -207451943 + AluJb SINE Alu 1 307 -5 318 261 0 0 chr3 20072651 20072716 -207451862 + L1MC4a LINE L1 5836 5900 -1908 1793 99 40 33 chr3 20072722 20073025 -207451553 + AluSq SINE Alu 1 305 -8 1057 125 0 27 chr3 20073141 20073325 -207451253 - AluSc SINE Alu -11 298 120 605 191 0 0 chr3 20073472 20073577 -207451001 + FRAM SINE Alu 20 124 -52 662 264 278 0 chr3 20073591 20073864 -207450714 - L2 LINE L2 -613 2701 2353 571 284 61 99 chr3 20073864 20074139 -207450439 - L1MEd LINE L1 -5736 383 99 1423 182 17 4 chr3 20074139 20074375 -207450203 + MER8 DNA MER2_type 1 239 0 1916 139 17 0 chr3 20074377 20074672 -207449906 - AluSx SINE Alu -4 308 9 571 284 61 99 chr3 20074672 20074788 -207449790 - L1MEd LINE L1 -6021 98 4 244 284 302 9 chr3 20075026 20075187 -207449391 - L3 LINE CR1 -3 1574 1461 1726 150 13 13 chr3 20075187 20075494 -207449084 + AluJo SINE Alu 1 307 -5 244 284 302 9 chr3 20075494 20075653 -207448925 - L3 LINE CR1 -116 1461 1160 350 346 15 7 chr3 20077521 20077657 -207446921 + L1MEd LINE L1 561 697 -5422 198 71 0 0 chr3 20077663 20077691 -207446887 + (CA)n Simple_repeat Simple_repeat 2 29 0 2149 112 0 0 chr3 20077976 20078271 -207446307 - AluSx SINE Alu -16 296 2 408 118 0 15 chr3 20078271 20078339 -207446239 + L1MB8 LINE L1 6111 6177 -1 849 186 25 25 chr3 20078371 20078532 -207446046 + FRAM SINE Alu 2 162 -4 807 139 0 31 chr3 20078533 20078662 -207445916 + FLAM_C SINE Alu 2 126 -17 1842 118 14 24 chr3 20078688 20078984 -207445594 + AluSx SINE Alu 2 294 -18 1972 124 0 3 chr3 20078992 20079282 -207445296 + AluSg SINE Alu 1 289 -21 318 290 45 26 chr3 20079283 20079438 -207445140 + L1MEd LINE L1 1029 1186 -4933 233 139 12 139 chr3 20079437 20079523 -207445055 + L1M4 LINE L1 3932 4006 -2140 * 411 239 33 11 chr3 20079547 20079639 -207444939 + MER5A DNA MER1_type 3 96 -93 1941 130 6 32 chr3 20079639 20079955 -207444623 - AluSx SINE Alu -4 308 1 1448 215 13 19 chr3 20080203 20080510 -207444068 + MLT1A1 LTR MaLR 1 305 -60 188 35 35 0 chr3 20080511 20080540 -207444038 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1726 75 0 0 chr3 20080540 20080754 -207443824 - AluSg/x SINE Alu -33 279 66 681 108 10 10 chr3 20080854 20080956 -207443622 - AluSq/x SINE Alu -210 103 2 244 259 184 70 chr3 20083091 20083193 -207441385 - Charlie7 DNA MER1_type -1923 689 600 2192 103 3 0 chr3 20083193 20083493 -207441085 - AluSx SINE Alu -11 301 1 244 259 184 70 chr3 20083493 20083591 -207440987 - Charlie7 DNA MER1_type -2012 600 466 609 195 58 190 chr3 20083999 20084316 -207440262 + Charlie7 DNA MER1_type 1428 1785 -827 180 0 0 0 chr3 20084316 20084336 -207440242 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1640 160 7 11 chr3 20084337 20084618 -207439960 - AluJo SINE Alu -32 280 1 609 195 58 190 chr3 20084618 20084714 -207439864 + Charlie7 DNA MER1_type 1784 1788 -824 2242 73 0 10 chr3 20084759 20085062 -207439516 - AluY SINE Alu -11 300 1 1768 93 4 8 chr3 20085068 20085316 -207439262 + AluSp SINE Alu 53 299 -14 254 254 87 8 chr3 20085317 20085443 -207439135 + Charlie7 DNA MER1_type 2429 2564 -48 889 168 13 0 chr3 20085697 20085852 -207438726 - AluSg/x SINE Alu -20 290 134 324 311 49 37 chr3 20086056 20086220 -207438358 + MER5A DNA MER1_type 14 179 -10 2292 91 0 3 chr3 20086777 20087084 -207437494 - AluSp SINE Alu -6 307 2 2007 107 3 35 chr3 20087239 20087549 -207437029 - AluSx SINE Alu -12 300 1 2375 90 3 0 chr3 20087619 20087931 -207436647 - AluSp SINE Alu 0 313 1 607 185 49 90 chr3 20087931 20088121 -207436457 - LTR23-int LTR ERV1 -2673 3590 3394 2048 92 20 26 chr3 20088121 20088424 -207436154 - AluSq SINE Alu -12 301 1 607 185 49 90 chr3 20088424 20088621 -207435957 - LTR23-int LTR ERV1 -2869 3394 1920 2111 108 10 10 chr3 20088770 20089075 -207435503 - AluSx SINE Alu -7 305 1 1564 141 23 59 chr3 20089137 20089442 -207435136 - AluJb SINE Alu -18 294 1 316 197 15 4 chr3 20089504 20089610 -207434968 - LTR23-int LTR ERV1 -3093 1929 1735 1798 154 3 0 chr3 20089705 20089991 -207434587 - AluSx SINE Alu -25 287 1 2157 156 97 0 chr3 20090393 20090783 -207433795 - MSTA LTR MaLR 0 428 1 879 134 49 0 chr3 20090783 20090925 -207433653 - MSTA-int LTR MaLR 0 1651 1503 1487 97 0 0 chr3 20090925 20091120 -207433458 - AluSx SINE Alu -117 195 1 1249 148 29 162 chr3 20091154 20091499 -207433079 + AluJb SINE Alu 4 302 0 2116 101 7 0 chr3 20091505 20091802 -207432776 + AluSq SINE Alu 1 299 -14 257 272 0 0 chr3 20091839 20091920 -207432658 - L1 LINE L1 -2380 3766 3686 815 204 24 0 chr3 20091929 20092096 -207432482 - FRAM SINE Alu -12 164 1 544 180 0 0 chr3 20092096 20092185 -207432393 - L1ME LINE L1 -598 5568 5480 578 113 0 0 chr3 20092185 20092265 -207432313 - AluSg/x SINE Alu -16 294 215 1929 112 14 0 chr3 20092673 20092980 -207431598 - AluSx SINE Alu 0 311 1 1653 180 3 0 chr3 20093028 20093322 -207431256 - AluJo SINE Alu -16 296 2 426 273 88 10 chr3 20093329 20093523 -207431055 - L1ME LINE L1 -298 5823 5615 494 216 0 0 chr3 20093920 20094008 -207430570 + AluJ/FLAM SINE Alu 2 89 -223 333 235 0 59 chr3 20094183 20094285 -207430293 - L1ME LINE L1 -539 5631 5536 416 154 26 0 chr3 20094419 20094497 -207430081 - Charlie5 DNA MER1_type 0 2624 2545 2005 141 0 0 chr3 20094500 20094791 -207429787 - AluSx SINE Alu -21 291 1 1379 195 14 30 chr3 20094791 20094952 -207429626 - AluJo SINE Alu -20 292 137 2038 107 29 0 chr3 20094952 20095233 -207429345 - AluSx SINE Alu -23 289 1 1379 195 14 30 chr3 20095233 20095368 -207429210 - AluJo SINE Alu -175 137 1 1134 129 15 40 chr3 20095415 20095616 -207428962 - AluJo SINE Alu -116 196 1 32 43 0 0 chr3 20095968 20096014 -207428564 + AT_rich Low_complexity Low_complexity 1 46 0 280 371 9 9 chr3 20096105 20096221 -207428357 + MIR SINE MIR 32 147 -115 2277 91 3 3 chr3 20096385 20096692 -207427886 + AluSg SINE Alu 1 307 -3 2194 101 3 0 chr3 20097382 20097689 -207426889 + AluY SINE Alu 1 308 -3 245 108 246 0 chr3 20097799 20097864 -207426714 - Tigger7 DNA MER2_type -142 2349 2269 2122 117 0 16 chr3 20098098 20098415 -207426163 - AluSq SINE Alu -1 312 1 2060 106 3 13 chr3 20098419 20098720 -207425858 - AluSp SINE Alu -15 298 1 1966 108 10 3 chr3 20098919 20099207 -207425371 - AluSp SINE Alu -23 290 1 255 243 271 7 chr3 20099831 20099975 -207424603 - MIR SINE MIR -10 252 71 322 238 133 66 chr3 20100054 20100235 -207424343 - MIR SINE MIR -47 215 23 1323 78 11 0 chr3 20100400 20100580 -207423998 - AluSg/x SINE Alu 0 310 129 2131 99 3 6 chr3 20100581 20100894 -207423684 - AluSx SINE Alu 0 312 1 30 27 0 0 chr3 20102046 20102083 -207422495 + GC_rich Low_complexity Low_complexity 1 37 0 746 146 0 0 chr3 20102571 20102681 -207421897 + AluJb SINE Alu 4 113 -199 27 0 0 0 chr3 20102693 20102720 -207421858 + AT_rich Low_complexity Low_complexity 1 27 0 1741 154 3 16 chr3 20102996 20103302 -207421276 + AluJo SINE Alu 1 302 -10 229 204 0 0 chr3 20103603 20103652 -207420926 + L1MC/D LINE L1 5779 5827 -517 2115 82 4 4 chr3 20103659 20103961 -207420617 + AluSc SINE Alu 1 302 0 2319 57 3 7 chr3 20104241 20104538 -207420040 + AluY SINE Alu 1 296 -15 1061 238 82 27 chr3 20104642 20105054 -207419524 + L1MC4 LINE L1 7608 8042 0 1734 153 24 0 chr3 20105065 20105353 -207419225 + AluJb SINE Alu 4 298 -14 459 192 81 10 chr3 20105559 20105658 -207418920 - MER57A LTR ERV1 -43 360 255 1202 148 148 34 chr3 20106396 20106517 -207418061 + AluJo SINE Alu 2 108 -204 1769 150 28 3 chr3 20106517 20106804 -207417774 + AluJb SINE Alu 1 294 -18 1202 148 148 34 chr3 20106804 20106945 -207417633 + AluJo SINE Alu 108 294 -18 2139 102 10 0 chr3 20107127 20107431 -207417147 + AluSp SINE Alu 5 311 -2 517 244 109 6 chr3 20107442 20107598 -207416980 - MIR SINE MIR -62 200 29 716 179 108 28 chr3 20107598 20107810 -207416768 - Charlie4 DNA MER1_type 0 1961 1733 456 159 0 0 chr3 20107835 20107904 -207416674 + Tigger2 DNA MER2_type 1 69 -2649 * 2286 144 80 12 chr3 20107888 20108311 -207416267 + Tigger2 DNA MER2_type 2267 2718 0 497 153 214 0 chr3 20108321 20108452 -207416126 - Charlie4 DNA MER1_type -1760 201 43 659 203 31 0 chr3 20108526 20108654 -207415924 + FLAM_A SINE Alu 1 132 -1 1721 269 192 25 chr3 20108657 20109224 -207415354 + L2 LINE L2 2137 2608 -705 2010 122 0 0 chr3 20109224 20109518 -207415060 + AluSg SINE Alu 1 294 -16 1721 269 192 25 chr3 20109518 20109831 -207414747 + L2 LINE L2 2608 2867 -446 1911 116 3 35 chr3 20109831 20110141 -207414437 - AluSx SINE Alu -12 300 1 1721 269 192 25 chr3 20110141 20110261 -207414317 + L2 LINE L2 2867 3288 -25 201 361 124 0 chr3 20110304 20110401 -207414177 + L2 LINE L2 3180 3288 -25 553 285 111 19 chr3 20110730 20110959 -207413619 - MIR SINE MIR -21 241 8 230 303 23 68 chr3 20110975 20111107 -207413471 + MIR3 SINE MIR 72 197 -11 1344 200 89 0 chr3 20111185 20111465 -207413113 + AluJo SINE Alu 1 305 -7 791 212 72 1 chr3 20113329 20113545 -207411033 - L1ME LINE L1 -608 5556 5318 1015 185 28 84 chr3 20113548 20113701 -207410877 + MLT1A2 LTR MaLR 5 165 -209 918 108 0 0 chr3 20113701 20113831 -207410747 + L1PB1 LINE L1 6016 6145 -6 1015 185 28 84 chr3 20113831 20113878 -207410700 + MLT1A2 LTR MaLR 165 213 -161 717 174 8 38 chr3 20113878 20114010 -207410568 + AluJo/FLAM SINE Alu 2 129 -173 2321 90 0 3 chr3 20114010 20114321 -207410257 + AluY SINE Alu 1 310 -1 2255 101 0 0 chr3 20114324 20114630 -207409948 + AluSx SINE Alu 1 306 -6 1015 185 28 84 chr3 20114630 20114837 -207409741 + MLT1A2 LTR MaLR 214 372 -2 814 147 10 113 chr3 20114837 20114885 -207409693 - L1M4b LINE L1 -5333 1526 1475 1833 163 7 0 chr3 20114885 20115191 -207409387 + AluSx SINE Alu 1 308 -4 2117 96 10 7 chr3 20115191 20115492 -207409086 + AluSg SINE Alu 1 302 -8 814 147 10 113 chr3 20115492 20115646 -207408932 - L1M4b LINE L1 -5382 1477 1344 1196 54 0 7 chr3 20115648 20115797 -207408781 + AluSg SINE Alu 1 148 -162 198 0 0 0 chr3 20115904 20115926 -207408652 + (T)n Simple_repeat Simple_repeat 1 22 0 736 138 9 0 chr3 20115932 20116069 -207408509 + AluSg/x SINE Alu 175 312 0 2067 130 18 132 chr3 20116164 20116362 -207408216 - LTR23 LTR ERV1 0 437 218 1954 137 10 3 chr3 20116362 20116661 -207407917 + AluSx SINE Alu 1 301 -11 2067 130 18 132 chr3 20116661 20116746 -207407832 - LTR23 LTR ERV1 -219 218 125 1957 126 10 17 chr3 20116746 20116882 -207407696 + AluJb SINE Alu 1 136 -176 1794 114 99 0 chr3 20116882 20117155 -207407423 + AluSx SINE Alu 1 300 -12 1957 126 10 17 chr3 20117155 20117320 -207407258 + AluJb SINE Alu 136 300 -12 2067 130 18 132 chr3 20117320 20117369 -207407209 - LTR23 LTR ERV1 -312 125 72 2230 100 3 3 chr3 20117369 20117678 -207406900 + AluSc SINE Alu 1 309 0 2067 130 18 132 chr3 20117678 20117756 -207406822 - LTR23 LTR ERV1 -365 72 86 1811 161 3 10 chr3 20117756 20118066 -207406512 - AluJb SINE Alu -4 308 1 2067 130 18 132 chr3 20118066 20118144 -207406434 - LTR23 LTR ERV1 -350 87 2 1491 203 7 7 chr3 20118564 20118695 -207405883 + AluJo SINE Alu 1 131 -181 2088 115 6 13 chr3 20118695 20119008 -207405570 + AluY SINE Alu 1 311 0 1491 203 7 7 chr3 20119008 20119167 -207405411 + AluJo SINE Alu 130 291 -21 2037 120 10 3 chr3 20119416 20119715 -207404863 + AluSx SINE Alu 1 301 -11 2039 104 0 0 chr3 20120048 20120326 -207404252 - AluSg SINE Alu -32 278 1 290 248 182 33 chr3 20120396 20120499 -207404079 + MIR SINE MIR 1 126 -136 2042 99 26 10 chr3 20120499 20120802 -207403776 - AluY SINE Alu -3 308 1 290 248 182 33 chr3 20120802 20120819 -207403759 + MIR SINE MIR 126 139 -123 916 108 0 43 chr3 20121124 20121263 -207403315 + FLAM_C SINE Alu 1 133 0 1579 131 55 24 chr3 20121452 20121743 -207402835 + AluJb SINE Alu 1 300 -12 199 241 138 0 chr3 20121871 20121929 -207402649 - MIR3 SINE MIR -5 203 138 322 269 90 21 chr3 20122051 20122196 -207402382 - HAL1 LINE L1 -1606 901 747 873 218 39 0 chr3 20122196 20122375 -207402203 - MER5A DNA MER1_type 0 189 4 703 219 76 19 chr3 20122435 20122645 -207401933 - HAL1 LINE L1 -1852 655 434 238 246 223 40 chr3 20122667 20122842 -207401736 - HAL1 LINE L1 -2159 348 142 562 236 173 11 chr3 20122947 20123138 -207401440 + MIR SINE MIR 25 246 -16 252 0 0 0 chr3 20123138 20123166 -207401412 + (TG)n Simple_repeat Simple_repeat 2 29 0 2069 132 3 0 chr3 20123167 20123470 -207401108 - AluSx SINE Alu -8 304 1 263 288 0 0 chr3 20123496 20123555 -207401023 - HAL1 LINE L1 -2439 68 10 2147 96 7 0 chr3 20123628 20123930 -207400648 + AluSc SINE Alu 1 304 -5 458 246 49 35 chr3 20123949 20124091 -207400487 - MIR3 SINE MIR -50 158 15 777 209 25 12 chr3 20125323 20125486 -207399092 + FRAM SINE Alu 1 165 -1 1108 103 157 0 chr3 20125520 20125705 -207398873 + L1PB4 LINE L1 5941 6154 -2 267 263 85 34 chr3 20125719 20125837 -207398741 - MIR SINE MIR -120 142 19 21 0 0 0 chr3 20126430 20126451 -207398127 + AT_rich Low_complexity Low_complexity 1 21 0 1285 162 19 76 chr3 20126795 20126902 -207397676 + AluJb SINE Alu 2 114 -198 180 0 0 0 chr3 20126902 20126922 -207397656 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1285 162 19 76 chr3 20126922 20127128 -207397450 + AluJb SINE Alu 114 297 -15 696 156 70 70 chr3 20127274 20127460 -207397118 + MER4-int LTR ERV1 3545 3730 -2868 2187 92 10 0 chr3 20127593 20127897 -207396681 - AluSq SINE Alu -6 307 1 207 0 0 0 chr3 20127904 20127927 -207396651 + (T)n Simple_repeat Simple_repeat 1 23 0 544 149 0 106 chr3 20127934 20128075 -207396503 + MER4-int LTR ERV1 3788 3913 -2685 2071 131 0 0 chr3 20128080 20128386 -207396192 + AluSx SINE Alu 6 311 -1 1723 146 0 4 chr3 20128395 20128669 -207395909 + AluJo SINE Alu 1 273 -39 249 33 0 0 chr3 20128688 20128718 -207395860 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1652 171 10 13 chr3 20128749 20129059 -207395519 - AluJo SINE Alu -3 309 1 729 206 80 150 chr3 20129060 20129512 -207395066 + MER4-int LTR ERV1 4091 4515 -1816 280 67 67 22 chr3 20129512 20129557 -207395021 - AluJo SINE Alu -168 134 88 729 206 80 150 chr3 20129557 20129835 -207394743 + MER4-int LTR ERV1 4515 4811 -1520 1036 168 74 5 chr3 20129836 20130039 -207394539 - AluJb SINE Alu -9 303 87 1767 162 3 10 chr3 20130072 20130386 -207394192 + AluJb SINE Alu 1 312 0 1691 167 3 7 chr3 20130601 20130888 -207393690 - AluJb SINE Alu -26 286 1 23 0 0 0 chr3 20130956 20130979 -207393599 + AT_rich Low_complexity Low_complexity 1 23 0 1423 144 125 4 chr3 20130984 20131248 -207393330 + AluSx SINE Alu 2 297 -15 1185 161 3 110 chr3 20131316 20131417 -207393161 + LTR44 LTR ERV1 1 111 -408 2178 145 23 78 chr3 20131417 20131736 -207392842 + L1MA3 LINE L1 5818 6100 -205 1998 124 0 7 chr3 20131736 20132027 -207392551 - AluSx SINE Alu -23 289 1 2178 145 23 78 chr3 20132027 20132223 -207392355 + L1MA3 LINE L1 6100 6305 0 1185 161 3 110 chr3 20132223 20132269 -207392309 + LTR44 LTR ERV1 111 160 -359 1918 142 0 0 chr3 20132269 20132583 -207391995 - AluSx SINE Alu 0 312 1 1185 161 3 110 chr3 20132583 20132725 -207391853 + LTR44 LTR ERV1 160 260 -259 2743 200 132 66 chr3 20132735 20132889 -207391689 - Charlie2a DNA MER1_type -1227 1635 1493 2420 64 0 0 chr3 20132889 20133186 -207391392 - AluSg SINE Alu -13 297 1 2743 200 132 66 chr3 20133186 20133505 -207391073 - Charlie2a DNA MER1_type -1369 1493 1197 1595 193 23 7 chr3 20133505 20133810 -207390768 + AluJb SINE Alu 1 310 -2 2743 200 132 66 chr3 20133810 20133885 -207390693 - Charlie2a DNA MER1_type -1665 1197 1128 2134 111 7 0 chr3 20133885 20134183 -207390395 - AluSg SINE Alu -10 300 1 2743 200 132 66 chr3 20134183 20134781 -207389797 - Charlie2a DNA MER1_type -1734 1128 411 216 0 0 0 chr3 20134787 20134811 -207389767 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 432 0 0 0 chr3 20134810 20134858 -207389720 + (TG)n Simple_repeat Simple_repeat 1 48 0 2305 76 10 0 chr3 20135095 20135397 -207389181 + AluSp SINE Alu 2 306 -7 763 165 9 0 chr3 20135510 20135625 -207388953 + FLAM_C SINE Alu 3 118 -25 33 25 0 0 chr3 20135625 20135665 -207388913 + AT_rich Low_complexity Low_complexity 1 40 0 2023 130 10 0 chr3 20136176 20136475 -207388103 + AluSx SINE Alu 1 302 -10 283 188 104 42 chr3 20137205 20137301 -207387277 - L1ME4a LINE L1 -70 6051 5950 251 283 58 17 chr3 20137442 20137562 -207387016 - L1ME4a LINE L1 -373 5748 5624 976 134 0 0 chr3 20137562 20137704 -207386874 + AluJb SINE Alu 1 142 -170 767 204 79 0 chr3 20137760 20137912 -207386666 + FAM SINE Alu 1 164 -11 1651 164 45 33 chr3 20137922 20138258 -207386320 - MLT1A1 LTR MaLR -25 340 1 462 256 37 104 chr3 20138258 20138446 -207386132 - L1ME4a LINE L1 -136 5985 5836 2145 114 0 0 chr3 20138446 20138736 -207385842 - AluSx SINE Alu -22 290 1 462 256 37 104 chr3 20138736 20138949 -207385629 - L1ME4a LINE L1 -285 5836 5610 1733 173 123 77 chr3 20139130 20139611 -207384967 + MLT1D LTR MaLR 3 505 0 252 0 0 0 chr3 20139694 20139722 -207384856 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2097 195 32 64 chr3 20140125 20140264 -207384314 + MER110 LTR ERV1 3 145 -346 2037 107 0 0 chr3 20140264 20140569 -207384009 + AluSx SINE Alu 1 305 0 2097 195 32 64 chr3 20140569 20140642 -207383936 + MER110 LTR ERV1 145 219 -272 1534 138 119 0 chr3 20140642 20140903 -207383675 + AluJb SINE Alu 6 297 -15 2097 195 32 64 chr3 20140903 20141186 -207383392 + MER110 LTR ERV1 219 484 -7 264 184 0 0 chr3 20141186 20141235 -207383343 - FLAM_A SINE Alu -1 132 84 1241 157 5 37 chr3 20141236 20141453 -207383125 - AluJo SINE Alu -94 218 9 2205 109 0 6 chr3 20141456 20141769 -207382809 - AluSx SINE Alu 0 312 2 2206 98 3 0 chr3 20141920 20142225 -207382353 - AluY SINE Alu -5 306 1 256 293 20 20 chr3 20142228 20142327 -207382251 - L1ME4a LINE L1 -508 5613 5515 894 152 76 149 chr3 20142335 20142429 -207382149 - LTR37A LTR ERV1 0 426 327 2185 110 0 3 chr3 20142429 20142739 -207381839 - AluSx SINE Alu -3 309 1 894 152 76 149 chr3 20142739 20142823 -207381755 - LTR37A LTR ERV1 -99 327 238 738 90 8 37 chr3 20142823 20142957 -207381621 + L1MA4 LINE L1 6171 6300 0 894 152 76 149 chr3 20142957 20143172 -207381406 - LTR37A LTR ERV1 -188 238 61 1096 117 0 23 chr3 20143175 20143346 -207381232 + AluSg/x SINE Alu 137 303 -9 2355 68 0 10 chr3 20143529 20143837 -207380741 + AluSp SINE Alu 1 305 -8 26 50 0 0 chr3 20144141 20144181 -207380397 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr3 20144230 20144253 -207380325 + AT_rich Low_complexity Low_complexity 1 23 0 1917 122 57 3 chr3 20144698 20144994 -207379584 - AluSx SINE Alu 0 312 1 339 340 0 0 chr3 20145008 20145102 -207379476 + (CCCA)n Simple_repeat Simple_repeat 3 96 0 352 183 10 10 chr3 20145115 20145219 -207379359 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 1213 141 8 77 chr3 20145250 20145484 -207379094 + MER20 DNA MER1_type 2 219 0 701 163 16 23 chr3 20145575 20145704 -207378874 - FLAM_C SINE Alu -14 129 2 246 273 0 100 chr3 20145709 20145819 -207378759 + MER5B DNA MER1_type 8 106 -72 2347 93 3 0 chr3 20145899 20146211 -207378367 + AluSp SINE Alu 1 313 0 855 207 35 12 chr3 20146341 20146510 -207378068 - MER5B DNA MER1_type -5 173 1 973 136 28 2 chr3 20146599 20146849 -207377729 - AluSq SINE Alu -6 307 2 263 128 0 0 chr3 20146912 20146959 -207377619 - Alu SINE Alu 0 302 256 1097 82 0 14 chr3 20146964 20147111 -207377467 - AluSq SINE Alu -167 145 1 198 209 0 0 chr3 20147234 20147277 -207377301 + (TG)n Simple_repeat Simple_repeat 2 44 0 224 383 25 8 chr3 20147421 20147541 -207377037 - MIR SINE MIR -67 141 20 28 0 0 0 chr3 20147813 20147841 -207376737 + AT_rich Low_complexity Low_complexity 1 28 0 920 121 0 21 chr3 20147841 20147981 -207376597 + FLAM_C SINE Alu 1 137 -6 217 229 0 0 chr3 20148070 20148118 -207376460 + T-rich Low_complexity Low_complexity 1 48 0 847 173 6 26 chr3 20148174 20148330 -207376248 - AluJo SINE Alu -159 153 1 577 277 117 39 chr3 20148434 20148716 -207375862 - LTR16C LTR ERVL -187 304 1 1737 104 10 78 chr3 20148731 20149040 -207375538 + AluSx SINE Alu 1 288 -24 2090 97 0 53 chr3 20149041 20149362 -207375216 + AluSg SINE Alu 1 304 -6 1091 254 42 17 chr3 20149362 20149687 -207374891 - L2 LINE L2 -282 3031 2696 2273 104 0 0 chr3 20150562 20150869 -207373709 - AluSp SINE Alu -6 307 1 183 156 0 0 chr3 20151004 20151036 -207373542 + (CATA)n Simple_repeat Simple_repeat 1 32 0 236 152 0 0 chr3 20151053 20151099 -207373479 + LTR66 LTR ERVL 394 439 -171 235 116 0 0 chr3 20151108 20151151 -207373427 - LTR66 LTR ERVL -174 436 394 363 258 119 60 chr3 20151173 20151203 -207373375 - L1ME4a LINE L1 -157 5964 5937 1620 173 24 0 chr3 20151203 20151498 -207373080 - AluJo SINE Alu -10 302 1 363 258 119 60 chr3 20151498 20151618 -207372960 - L1ME4a LINE L1 -184 5937 5805 230 227 67 88 chr3 20151621 20151815 -207372763 + L1MC4 LINE L1 7837 8026 -16 311 219 68 82 chr3 20151858 20152004 -207372574 - L1ME4a LINE L1 -342 5779 5636 331 250 176 16 chr3 20152131 20152319 -207372259 - L1ME4a LINE L1 -694 5476 5259 526 200 50 61 chr3 20153410 20153590 -207370988 - MIR SINE MIR -81 181 4 466 330 34 11 chr3 20153734 20153910 -207370668 + MIR SINE MIR 4 183 -79 24 0 0 0 chr3 20155866 20155890 -207368688 + AT_rich Low_complexity Low_complexity 1 24 0 497 262 16 0 chr3 20156393 20156515 -207368063 - MIR SINE MIR -116 146 23 2072 119 3 0 chr3 20157760 20158055 -207366523 - AluSq SINE Alu -16 297 2 1563 169 32 3 chr3 20158065 20158349 -207366229 - AluJo SINE Alu -20 292 1 2284 91 0 0 chr3 20158462 20158759 -207365819 - AluSx SINE Alu -15 297 1 227 182 13 91 chr3 20158764 20158841 -207365737 - L1ME LINE L1 -387 5734 5664 523 269 71 120 chr3 20158904 20159089 -207365489 + L2 LINE L2 2887 3080 -233 1808 146 31 0 chr3 20159089 20159376 -207365202 + AluSx SINE Alu 1 296 -16 523 269 71 120 chr3 20159376 20159465 -207365113 + L2 LINE L2 3080 3172 -141 783 209 126 0 chr3 20159465 20159647 -207364931 + MER3 DNA MER1_type 2 206 -3 523 269 71 120 chr3 20159647 20159820 -207364758 + L2 LINE L2 3172 3313 0 676 128 0 0 chr3 20159838 20159940 -207364638 - U13 snRNA snRNA -2 102 1 2058 121 7 0 chr3 20160597 20160895 -207363683 + AluSx SINE Alu 1 300 -12 400 290 86 6 chr3 20161171 20161333 -207363245 - MIR3 SINE MIR -3 205 31 1713 135 20 13 chr3 20161632 20161935 -207362643 + AluJo SINE Alu 3 307 -5 1998 117 0 26 chr3 20162046 20162354 -207362224 + AluSg SINE Alu 1 300 -10 1754 156 7 3 chr3 20162467 20162768 -207361810 - AluSx SINE Alu -10 302 1 268 203 69 0 chr3 20163073 20163153 -207361425 - L1ME LINE L1 -340 5781 5698 476 289 39 6 chr3 20163333 20163489 -207361089 - MIR SINE MIR -5 257 97 2084 98 28 0 chr3 20163489 20163775 -207360803 + AluSx SINE Alu 1 294 -18 985 128 14 0 chr3 20163775 20163923 -207360655 + AluSg/x SINE Alu 134 283 -29 218 336 18 35 chr3 20163931 20164042 -207360536 - MIR SINE MIR -145 117 9 221 213 13 120 chr3 20164042 20164117 -207360461 + MER5A DNA MER1_type 1 67 -122 540 250 26 0 chr3 20164171 20164287 -207360291 + MER5A DNA MER1_type 71 189 0 593 266 77 14 chr3 20164477 20164716 -207359862 - L1ME LINE L1 -556 5610 5358 492 293 26 0 chr3 20164879 20164995 -207359583 - MER5A DNA MER1_type 0 189 71 9894 62 5 41 chr3 20165034 20166462 -207358116 + SVA Other Other 1 1377 -9 25 0 0 0 chr3 20166462 20166487 -207358091 + AT_rich Low_complexity Low_complexity 1 25 0 225 321 42 54 chr3 20167131 20167299 -207357279 + L2 LINE L2 2894 3059 -213 1188 144 18 168 chr3 20167374 20167555 -207357023 - MER33 DNA MER1_type -2261 324 118 1031 181 0 0 chr3 20167555 20167721 -207356857 - FRAM SINE Alu 0 166 1 1188 144 18 168 chr3 20167721 20167786 -207356792 - MER33 DNA MER1_type -2467 118 151 2113 135 127 16 chr3 20167786 20168171 -207356407 + MSTA LTR MaLR 1 428 0 1188 144 18 168 chr3 20168171 20168304 -207356274 - MER33 DNA MER1_type -2433 152 1 7996 54 1 0 chr3 20168850 20169815 -207354763 + LTR5 LTR ERVK 1 966 -3 853 264 23 0 chr3 20169859 20170079 -207354499 - MIR SINE MIR -21 241 17 2076 124 29 10 chr3 20171583 20171889 -207352689 - AluSx SINE Alu 0 312 1 2332 98 17 0 chr3 20172216 20172513 -207352065 - AluSx SINE Alu -10 302 1 2075 141 3 3 chr3 20173753 20174052 -207350526 - AluJo SINE Alu -13 299 1 1578 201 31 28 chr3 20174054 20174412 -207350166 + MLT1A2 LTR MaLR 8 366 -8 1887 176 0 3 chr3 20175676 20175978 -207348600 + AluJo SINE Alu 1 301 -11 358 223 53 11 chr3 20176008 20176102 -207348476 - MIR SINE MIR -10 252 155 425 209 22 0 chr3 20176760 20176851 -207347727 + L1ME4a LINE L1 5520 5612 -509 472 278 311 13 chr3 20176859 20177158 -207347420 + L1ME4a LINE L1 5728 6115 -6 1909 177 3 0 chr3 20177174 20177485 -207347093 - AluJb SINE Alu 0 312 1 2205 114 7 0 chr3 20177609 20177899 -207346679 - AluSx SINE Alu -16 296 5 1040 148 50 120 chr3 20177903 20178092 -207346486 + LTR37B LTR ERV1 135 289 -179 1874 179 10 3 chr3 20178092 20178400 -207346178 - AluJb SINE Alu -2 310 1 1040 148 50 120 chr3 20178400 20178569 -207346009 + LTR37B LTR ERV1 289 468 0 343 68 0 0 chr3 20178737 20178781 -207345797 + Alu SINE Alu 1 44 -258 355 246 53 9 chr3 20178881 20178995 -207345583 + L1M4c LINE L1 1667 1785 -4599 1946 156 0 31 chr3 20179007 20179183 -207345395 - AluJb SINE Alu -2 310 147 2308 97 3 31 chr3 20179183 20179504 -207345074 - AluSp SINE Alu -1 312 1 1946 156 0 31 chr3 20179504 20179647 -207344931 - AluJb SINE Alu -165 147 1 325 167 83 42 chr3 20179647 20179719 -207344859 - L1M4 LINE L1 -6465 77 3 622 225 62 0 chr3 20179748 20179877 -207344701 - AluJo SINE Alu -175 137 1 323 178 47 116 chr3 20180039 20180082 -207344496 - L1M4c LINE L1 -4688 1696 1652 2300 95 3 3 chr3 20180082 20180387 -207344191 - AluY SINE Alu -6 305 1 323 178 47 116 chr3 20180387 20180430 -207344148 - L1M4c LINE L1 -4732 1652 1619 1931 158 7 10 chr3 20180430 20180740 -207343838 - AluJo SINE Alu -3 309 1 323 178 47 116 chr3 20180740 20180781 -207343797 - L1M4c LINE L1 -4765 1619 1577 2400 84 10 0 chr3 20180785 20181081 -207343497 - AluSx SINE Alu -13 299 1 983 172 10 66 chr3 20181336 20181364 -207343214 + AluSg/x SINE Alu 117 145 -167 2568 54 0 0 chr3 20181364 20181661 -207342917 + AluY SINE Alu 1 297 -14 983 172 10 66 chr3 20181661 20181830 -207342748 + AluSg/x SINE Alu 145 303 -9 352 173 86 0 chr3 20181840 20181921 -207342657 - L1ME LINE L1 -468 5702 5615 443 200 0 21 chr3 20181952 20182047 -207342531 + MER69 DNA AcHobo 2432 2524 -2 322 240 89 24 chr3 20182206 20182338 -207342240 + LTR33A LTR ERVL 50 155 -368 1754 128 4 0 chr3 20183138 20183389 -207341189 - AluSx SINE Alu -19 293 42 1543 273 61 25 chr3 20183397 20183995 -207340583 + L1M4 LINE L1 3622 4250 -1896 1737 162 3 11 chr3 20183995 20184279 -207340299 + AluJo SINE Alu 27 308 -4 1543 273 61 25 chr3 20184279 20184373 -207340205 + L1M4 LINE L1 4250 4339 -1807 792 214 21 16 chr3 20184424 20184616 -207339962 + AluJo SINE Alu 120 312 0 1987 76 0 0 chr3 20184623 20184859 -207339719 + AluSq SINE Alu 1 236 -77 466 231 85 8 chr3 20184922 20185052 -207339526 - L1ME1 LINE L1 -253 5913 5774 224 58 13 142 chr3 20185155 20185310 -207339268 + (TA)n Simple_repeat Simple_repeat 1 135 0 305 116 14 82 chr3 20185379 20185525 -207339053 + (TA)n Simple_repeat Simple_repeat 1 136 0 2141 116 0 0 chr3 20185525 20185810 -207338768 - AluSx SINE Alu -27 285 1 1221 148 76 17 chr3 20185841 20186077 -207338501 + AluJo SINE Alu 41 290 -22 1018 183 0 0 chr3 20186403 20186572 -207338006 + AluJo SINE Alu 127 295 -17 2404 105 0 10 chr3 20186574 20186888 -207337690 + AluSx SINE Alu 1 311 -1 2328 64 7 7 chr3 20186888 20187196 -207337382 + AluY SINE Alu 1 308 0 279 71 0 214 chr3 20188694 20188746 -207335832 + AluJ/FRAM SINE Alu 232 261 -41 1988 141 18 0 chr3 20188746 20189030 -207335548 - AluSx SINE Alu -23 289 1 279 71 0 214 chr3 20189030 20189061 -207335517 + AluJ/FRAM SINE Alu 261 297 -5 2129 180 45 47 chr3 20189061 20189164 -207335414 + L1MB8 LINE L1 5325 5427 -757 2267 106 0 0 chr3 20189164 20189456 -207335122 + AluSg SINE Alu 1 292 -18 2129 180 45 47 chr3 20189456 20189636 -207334942 + L1MB8 LINE L1 5427 5606 -578 1903 129 18 7 chr3 20189636 20189949 -207334629 + AluSx SINE Alu 1 316 0 2129 180 45 47 chr3 20189949 20190024 -207334554 + L1MB8 LINE L1 5606 5680 -504 2132 215 11 9 chr3 20190024 20190466 -207334112 + LTR47B LTR ERVL 1 443 0 2129 180 45 47 chr3 20190466 20190655 -207333923 + L1MB8 LINE L1 5680 5874 -310 943 158 0 7 chr3 20190659 20190798 -207333780 + FAM SINE Alu 13 150 -35 1982 121 0 7 chr3 20190827 20191100 -207333478 + AluSx SINE Alu 1 271 -41 389 311 0 0 chr3 20191107 20191197 -207333381 - L1MC4 LINE L1 -1339 6703 6614 * 395 296 0 0 chr3 20191126 20191214 -207333364 + L1MC4 LINE L1 6615 6702 -1340 539 221 135 0 chr3 20191256 20191473 -207333105 + L1MB8 LINE L1 5902 6166 -17 575 257 47 69 chr3 20191514 20191790 -207332788 - MLT1I LTR MaLR -28 381 112 2333 124 0 0 chr3 20192066 20192372 -207332206 - AluSx SINE Alu -6 306 1 2391 109 0 0 chr3 20192372 20192675 -207331903 - AluSx SINE Alu -8 304 2 381 294 5 64 chr3 20192676 20192863 -207331715 - L1MCc LINE L1 -5578 845 670 1316 151 22 30 chr3 20193139 20193371 -207331207 - AluJb SINE Alu 0 312 83 996 271 57 8 chr3 20193374 20193740 -207330838 - L1MCc LINE L1 -5999 424 41 305 300 58 9 chr3 20193775 20194037 -207330541 + L1M4 LINE L1 5120 5399 -747 1868 162 10 3 chr3 20194037 20194327 -207330251 + AluJo SINE Alu 3 294 -18 2241 121 0 0 chr3 20194502 20194792 -207329786 + AluSx SINE Alu 1 290 -22 393 236 136 61 chr3 20194860 20195124 -207329454 + L1MCb LINE L1 973 1248 -4856 1798 180 0 7 chr3 20195138 20195427 -207329151 + AluJo SINE Alu 1 287 -25 1127 216 98 36 chr3 20195451 20195608 -207328970 + L1MCb LINE L1 2767 2913 -3651 2413 60 0 17 chr3 20195608 20195909 -207328669 + AluY SINE Alu 1 296 -15 1127 216 98 36 chr3 20195909 20196139 -207328439 + L1MCb LINE L1 2913 3178 -3386 889 196 0 7 chr3 20196139 20196292 -207328286 + FRAM SINE Alu 1 146 -30 550 209 37 52 chr3 20196323 20196514 -207328064 + L1MCb LINE L1 3189 3376 -3188 1596 168 0 93 chr3 20196514 20196847 -207327731 + AluJb SINE Alu 1 302 0 1512 109 52 0 chr3 20196912 20197122 -207327456 + AluSc SINE Alu 83 303 -6 1559 167 4 4 chr3 20197123 20197375 -207327203 + AluJo SINE Alu 25 276 -36 1350 22 11 17 chr3 20197390 20197569 -207327009 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 287 175 0 16 chr3 20197578 20197641 -207326937 + GA-rich Low_complexity Low_complexity 2 63 0 669 158 17 85 chr3 20197647 20197778 -207326800 + L1ME LINE L1 5358 5476 -690 2390 91 0 3 chr3 20197778 20198074 -207326504 + AluSq SINE Alu 3 297 -16 669 158 17 85 chr3 20198074 20198119 -207326459 + L1ME LINE L1 5476 5522 -644 699 98 0 10 chr3 20198225 20198327 -207326251 + AluSg/x SINE Alu 206 306 -4 2337 105 0 0 chr3 20198337 20198632 -207325946 + AluSx SINE Alu 1 295 -17 631 157 56 0 chr3 20198643 20198751 -207325827 + AluJb SINE Alu 177 290 -22 2270 109 10 0 chr3 20198767 20199069 -207325509 - AluSx SINE Alu -5 307 3 4785 220 71 67 chr3 20199069 20199121 -207325457 - L1M4b LINE L1 -5253 1606 1556 1906 170 0 13 chr3 20199121 20199427 -207325151 - AluJb SINE Alu -10 302 1 4785 220 71 67 chr3 20199427 20200034 -207324544 - L1M4b LINE L1 -5303 1556 953 2285 119 7 0 chr3 20200034 20200344 -207324234 - AluSx SINE Alu 0 312 1 4785 220 71 67 chr3 20200344 20201177 -207323401 - L1M4b LINE L1 -5906 953 107 180 0 0 0 chr3 20201177 20201197 -207323381 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2257 89 25 0 chr3 20201200 20201482 -207323096 - AluSx SINE Alu -23 289 1 972 185 0 0 chr3 20201486 20201643 -207322935 - FRAM SINE Alu -19 157 1 531 111 0 0 chr3 20201783 20201855 -207322723 + AluS SINE Alu 2 73 -239 222 270 48 0 chr3 20201855 20201918 -207322660 + L2 LINE L2 3242 3307 -6 1768 181 11 0 chr3 20202188 20202475 -207322103 - AluJb SINE Alu -8 304 15 461 289 132 18 chr3 20202504 20202777 -207321801 - LTR16A LTR ERVL -77 373 70 274 251 212 40 chr3 20202843 20203100 -207321478 - L2 LINE L2 -297 3016 2719 529 122 24 0 chr3 20203448 20203530 -207321048 + AluJ/FLAM SINE Alu 5 88 -224 596 180 108 0 chr3 20203630 20203741 -207320837 - FLAM_C SINE Alu -20 123 1 1525 150 0 0 chr3 20203814 20204034 -207320544 + AluSx SINE Alu 49 268 -44 2537 43 10 0 chr3 20204042 20204371 -207320207 + AluY SINE Alu 1 311 0 495 258 26 26 chr3 20205884 20206039 -207318539 - MIR3 SINE MIR 0 208 54 528 16 0 0 chr3 20206116 20206177 -207318401 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 1296 251 151 37 chr3 20206177 20206336 -207318242 - L2 LINE L2 -438 2876 2737 1740 201 10 0 chr3 20206336 20206634 -207317944 - AluJo SINE Alu -11 301 1 1296 251 151 37 chr3 20206634 20206860 -207317718 - L2 LINE L2 -577 2737 2538 2278 124 3 0 chr3 20206860 20207167 -207317411 + AluSq SINE Alu 1 308 -5 1296 251 151 37 chr3 20207167 20207297 -207317281 - L2 LINE L2 -776 2538 2301 1282 98 11 6 chr3 20207331 20207514 -207317064 - MER83-int LTR ERV1 -4089 196 13 3237 103 11 5 chr3 20207515 20207960 -207316618 - MER83 LTR ERV1 0 448 1 854 162 57 72 chr3 20208012 20208277 -207316301 + L1M4 LINE L1 4115 4375 -1771 3082 145 40 23 chr3 20208284 20208609 -207315969 + L1MC1 LINE L1 5523 5864 -469 2310 117 7 0 chr3 20208609 20208918 -207315660 + AluSx SINE Alu 1 311 -1 3082 145 40 23 chr3 20208918 20209165 -207315413 + L1MC1 LINE L1 5864 6105 -228 2110 138 0 0 chr3 20209165 20209461 -207315117 + AluJb SINE Alu 1 296 -16 189 0 0 0 chr3 20209464 20209485 -207315093 + (CA)n Simple_repeat Simple_repeat 2 22 0 987 150 31 171 chr3 20209485 20209558 -207315020 + L1M4 LINE L1 4378 4460 -1686 2333 105 3 0 chr3 20209558 20209853 -207314725 + AluSp SINE Alu 1 296 -17 987 150 31 171 chr3 20209853 20209957 -207314621 + L1M4 LINE L1 4460 4577 -1569 2425 55 3 14 chr3 20209957 20210249 -207314329 + AluY SINE Alu 10 298 -13 987 150 31 171 chr3 20210249 20210291 -207314287 + L1M4 LINE L1 4577 4623 -1523 2036 153 0 7 chr3 20210291 20210592 -207313986 + AluJb SINE Alu 1 299 -13 987 150 31 171 chr3 20210592 20210790 -207313788 + L1M4 LINE L1 4623 4738 -1408 761 150 0 8 chr3 20210811 20210931 -207313647 + AluJo/FLAM SINE Alu 8 126 -186 1066 426 28 3 chr3 20210933 20211246 -207313332 + AluY SINE Alu 2 321 0 1192 151 4 84 chr3 20211328 20211601 -207312977 + AluJb SINE Alu 64 312 0 2178 81 12 59 chr3 20211712 20212032 -207312546 + AluY SINE Alu 1 305 -6 269 268 14 0 chr3 20212049 20212120 -207312458 + MIR SINE MIR 156 227 -35 234 369 16 25 chr3 20212532 20212654 -207311924 + L3 LINE CR1 654 774 -803 555 265 94 26 chr3 20212870 20213202 -207311376 + MER115 DNA AcHobo 123 548 -145 451 332 46 76 chr3 20213391 20213852 -207310726 + L3 LINE CR1 1128 1574 -3 185 290 58 29 chr3 20214285 20214354 -207310224 + MIR3 SINE MIR 86 156 -52 239 328 188 0 chr3 20214947 20215075 -207309503 - L2 LINE L2 0 3313 3162 902 239 39 9 chr3 20215100 20215330 -207309248 + MIR SINE MIR 13 249 -13 2431 99 0 3 chr3 20215331 20215644 -207308934 - AluSx SINE Alu 0 312 1 590 315 98 31 chr3 20215784 20216111 -207308467 - MLT1L LTR MaLR -82 533 185 904 154 0 0 chr3 20216114 20216250 -207308328 + AluJo SINE Alu 1 136 -176 2064 112 14 10 chr3 20216259 20216577 -207308001 + AluSq SINE Alu 1 313 0 234 237 34 0 chr3 20216577 20216636 -207307942 - MLT1L LTR MaLR -423 192 132 665 296 40 10 chr3 20216746 20216945 -207307633 - L2 LINE L2 -257 3056 2852 629 169 63 14 chr3 20217206 20217348 -207307230 - MER3 DNA MER1_type -87 122 21 2138 152 3 0 chr3 20217410 20217720 -207306858 - AluSx SINE Alu -1 311 1 1812 123 0 0 chr3 20217860 20218112 -207306466 - AluSx SINE Alu -19 293 42 2098 99 3 27 chr3 20218275 20218567 -207306011 + AluSg SINE Alu 5 289 -21 257 257 76 100 chr3 20219460 20219670 -207304908 - L2 LINE L2 -127 3145 2941 1945 128 3 44 chr3 20219723 20219862 -207304716 + AluSq SINE Alu 1 144 -169 2416 86 0 7 chr3 20219862 20220165 -207304413 + AluSx SINE Alu 1 301 -11 1945 128 3 44 chr3 20220165 20220345 -207304233 + AluSq SINE Alu 144 307 -6 645 152 0 0 chr3 20220930 20221029 -207303549 + AluJo SINE Alu 36 134 -178 281 345 9 26 chr3 20221565 20221678 -207302900 - MIR SINE MIR -21 241 131 582 125 0 0 chr3 20221718 20221806 -207302772 + HY3 scRNA scRNA 11 98 -3 238 255 51 31 chr3 20221933 20222031 -207302547 - MIR3 SINE MIR -51 157 58 260 265 15 15 chr3 20222655 20222723 -207301855 - L2 LINE L2 -14 3299 3232 2349 96 0 22 chr3 20222754 20223067 -207301511 + AluSx SINE Alu 1 306 -6 1779 174 10 26 chr3 20223180 20223490 -207301088 + AluJb SINE Alu 1 305 -7 189 338 44 0 chr3 20223769 20223837 -207300741 - MIR SINE MIR -55 153 83 863 169 12 24 chr3 20224059 20224225 -207300353 - MER58B DNA MER1_type -11 330 167 2394 51 41 3 chr3 20224248 20224541 -207300037 + AluY SINE Alu 1 304 -7 1933 163 0 13 chr3 20225301 20225608 -207298970 + AluJb SINE Alu 1 303 -9 2266 103 10 0 chr3 20225612 20225913 -207298665 + AluSq SINE Alu 1 304 -9 1661 128 0 4 chr3 20226014 20226241 -207298337 - AluSx SINE Alu -86 226 1 284 298 39 19 chr3 20226735 20226839 -207297739 + L2 LINE L2 3189 3294 -19 1069 56 0 0 chr3 20227330 20227455 -207297123 - AluSg/x SINE Alu -16 294 170 2376 86 3 13 chr3 20227457 20227761 -207296817 - AluSq SINE Alu -12 301 1 293 330 94 18 chr3 20228461 20228685 -207295893 + L1MEd LINE L1 565 805 -5314 194 359 29 19 chr3 20228955 20229058 -207295520 + L2 LINE L2 2946 3049 -223 333 257 68 0 chr3 20229068 20229142 -207295436 + L1MC4 LINE L1 6614 6692 -1350 2368 103 7 0 chr3 20229144 20229446 -207295132 - AluSx SINE Alu -8 304 1 2536 57 0 0 chr3 20229459 20229756 -207294822 - AluY SINE Alu -14 297 1 390 239 65 77 chr3 20229820 20229975 -207294603 + L2 LINE L2 3143 3295 -18 1743 178 0 3 chr3 20229975 20230267 -207294311 - 7SLRNA srpRNA srpRNA -7 313 23 1875 136 14 34 chr3 20230325 20230620 -207293958 - AluSx SINE Alu -23 289 1 2452 77 0 0 chr3 20230628 20230926 -207293652 - AluSc SINE Alu -11 298 1 1755 191 38 46 chr3 20230956 20231349 -207293229 + MLT1B LTR MaLR 1 390 0 1668 85 0 0 chr3 20231394 20231630 -207292948 + AluSg/x SINE Alu 83 318 0 1668 165 48 7 chr3 20231639 20231934 -207292644 + AluJb SINE Alu 1 306 0 1941 129 7 4 chr3 20233288 20233609 -207290969 - AluSx SINE Alu 0 327 6 1445 159 4 4 chr3 20237490 20237717 -207286861 + AluJb SINE Alu 1 227 -85 501 212 10 0 chr3 20237730 20237829 -207286749 - MER3 DNA MER1_type -109 100 1 183 219 24 0 chr3 20237839 20237880 -207286698 + MIR3 SINE MIR 166 207 -1 228 234 262 35 chr3 20238130 20238275 -207286303 + MLT1K LTR MaLR 389 566 -22 330 208 139 5 chr3 20238606 20238708 -207285870 + MIR SINE MIR 45 154 -68 367 200 25 83 chr3 20238840 20238908 -207285670 - MIR SINE MIR -103 159 98 2217 79 3 38 chr3 20238908 20239232 -207285346 + AluSq SINE Alu 1 314 0 367 200 25 83 chr3 20239232 20239282 -207285296 - MIR SINE MIR -164 98 47 594 262 134 15 chr3 20241189 20241586 -207282992 - L1ME LINE L1 -547 5623 5177 1344 168 11 120 chr3 20241588 20241841 -207282737 - L1MD2 LINE L1 0 8042 7763 2065 125 35 0 chr3 20241841 20242129 -207282449 - AluSq SINE Alu -15 298 1 1344 168 11 120 chr3 20242129 20242287 -207282291 - L1MD2 LINE L1 -279 7763 6244 1560 124 68 0 chr3 20242288 20242537 -207282041 + MER1B DNA MER1_type 73 338 -1 1609 191 110 23 chr3 20242601 20243072 -207281506 - L1MC4 LINE L1 -406 7636 7125 2106 116 3 7 chr3 20243072 20243374 -207281204 - AluSg SINE Alu -9 301 1 596 172 33 46 chr3 20243375 20243526 -207281052 - MLT1C LTR MaLR -318 149 1 804 254 35 66 chr3 20243549 20243816 -207280762 - L1ME LINE L1 -1194 4952 4699 1873 179 7 0 chr3 20243816 20244117 -207280461 + AluJo SINE Alu 1 303 -9 804 254 35 66 chr3 20244117 20244243 -207280335 - L1ME LINE L1 -1447 4699 4571 1713 243 48 50 chr3 20244570 20245222 -207279356 + L2 LINE L2 2683 3312 -1 2097 85 3 25 chr3 20245257 20245540 -207279038 - AluSx SINE Alu -2 310 34 268 293 49 24 chr3 20245542 20245665 -207278913 + MIR3 SINE MIR 61 186 -22 452 131 20 91 chr3 20245937 20246036 -207278542 + MLT1B LTR MaLR 1 92 -298 985 167 23 0 chr3 20246039 20246213 -207278365 + MLT1B LTR MaLR 213 390 0 2155 133 3 0 chr3 20246837 20247139 -207277439 - AluSx SINE Alu -9 303 1 1735 141 47 10 chr3 20247145 20247526 -207277052 - L1MB3 LINE L1 -44 6139 5688 2111 127 3 16 chr3 20247689 20248004 -207276574 - AluJb SINE Alu 0 312 2 450 260 59 76 chr3 20248070 20248374 -207276204 + L2 LINE L2 2377 2675 -639 861 87 8 31 chr3 20248394 20248521 -207276057 - AluSg/x SINE Alu -20 290 167 2329 86 3 0 chr3 20250643 20250935 -207273643 - AluSp SINE Alu 0 313 21 2592 68 3 0 chr3 20251011 20251321 -207273257 - AluY SINE Alu 0 311 1 257 244 26 13 chr3 20251844 20251922 -207272656 + L2 LINE L2 3235 3313 0 2451 48 42 0 chr3 20252521 20252810 -207271768 + AluY SINE Alu 1 301 -10 2365 95 3 0 chr3 20253100 20253396 -207271182 - AluSp SINE Alu -16 297 1 1084 104 0 0 chr3 20253396 20253531 -207271047 - AluSq/x SINE Alu -177 135 1 459 159 26 80 chr3 20253532 20253645 -207270933 - L1MB3 LINE L1 -730 5436 5330 2438 92 0 0 chr3 20253646 20253949 -207270629 - AluSc SINE Alu -6 303 1 1390 195 108 0 chr3 20253950 20254273 -207270305 - L1MB3 LINE L1 -1814 4332 3975 425 253 165 6 chr3 20254280 20254438 -207270140 - L1MEc LINE L1 -5919 477 295 2378 85 0 0 chr3 20254440 20254735 -207269843 - AluY SINE Alu 0 311 17 405 142 142 108 chr3 20254876 20254956 -207269622 - L2 LINE L2 0 3313 3226 1935 159 3 3 chr3 20254956 20255246 -207269332 + AluSx SINE Alu 1 290 -22 405 142 142 108 chr3 20255246 20255285 -207269293 - L2 LINE L2 -87 3226 3190 2266 125 0 3 chr3 20255724 20256027 -207268551 - AluSx SINE Alu -10 302 1 1633 152 30 43 chr3 20256846 20257149 -207267429 + AluJo SINE Alu 1 299 -13 416 289 76 41 chr3 20257566 20257763 -207266815 + MIR SINE MIR 2 205 -57 1219 195 25 12 chr3 20257764 20258005 -207266573 - AluJb SINE Alu -6 306 63 276 26 0 0 chr3 20258011 20258049 -207266529 + L1MA1 LINE L1 6263 6300 -2 * 1976 111 49 59 chr3 20258044 20258226 -207266352 - L1MA3 LINE L1 -35 6270 6088 2225 113 3 0 chr3 20258226 20258526 -207266052 - AluSq SINE Alu -12 301 1 1976 111 49 59 chr3 20258526 20258731 -207265847 - L1MA3 LINE L1 -217 6088 5887 208 178 68 82 chr3 20258807 20258880 -207265698 - MIR SINE MIR -67 195 124 1202 163 9 40 chr3 20258890 20259117 -207265461 + AluJo SINE Alu 1 220 -92 2524 66 0 3 chr3 20259120 20259425 -207265153 + AluY SINE Alu 1 304 -7 1830 104 0 0 chr3 20259425 20259655 -207264923 + AluSg/x SINE Alu 71 301 -9 824 190 63 0 chr3 20259655 20259813 -207264765 + AluJo/FRAM SINE Alu 135 302 -10 572 165 0 10 chr3 20260427 20260524 -207264054 + FLAM_C SINE Alu 37 132 -11 1667 179 29 15 chr3 20260528 20260837 -207263741 + AluJo SINE Alu 5 317 0 833 250 52 35 chr3 20260855 20261097 -207263481 + MIR SINE MIR 7 248 -14 1781 184 7 0 chr3 20261459 20261747 -207262831 - AluJo SINE Alu -22 290 1 1735 167 10 27 chr3 20261749 20262048 -207262530 - AluJo SINE Alu -18 294 1 205 191 21 0 chr3 20262057 20262104 -207262474 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1306 179 120 18 chr3 20262421 20262695 -207261883 - AluJo SINE Alu -8 304 3 2245 127 0 0 chr3 20262707 20263014 -207261564 - AluSx SINE Alu -5 307 1 336 266 82 32 chr3 20263090 20263216 -207261362 - L1MC4 LINE L1 -152 7890 7649 180 0 0 0 chr3 20263328 20263348 -207261230 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1212 177 68 32 chr3 20263356 20263605 -207260973 - AluJb SINE Alu -54 258 1 320 231 160 58 chr3 20263607 20263763 -207260815 - L1MC5 LINE L1 -441 7520 7349 755 161 8 0 chr3 20264070 20264200 -207260378 - FLAM_C SINE Alu -2 131 1 2235 126 0 3 chr3 20265853 20266155 -207258423 + AluSx SINE Alu 1 301 -11 2780 116 27 44 chr3 20266166 20266205 -207258373 - Tigger1 DNA MER2_type -1927 491 453 1456 174 10 69 chr3 20266205 20266510 -207258068 + AluJo SINE Alu 12 298 -14 2780 116 27 44 chr3 20266510 20266946 -207257632 - Tigger1 DNA MER2_type -1965 453 24 1918 173 3 0 chr3 20267230 20267530 -207257048 - AluJb SINE Alu -11 301 1 2763 166 126 12 chr3 20267531 20268109 -207256469 - L1M4c LINE L1 -5733 651 8 252 323 58 39 chr3 20268321 20268476 -207256102 + MIR3 SINE MIR 3 160 -48 1787 163 31 0 chr3 20268481 20268775 -207255803 - AluJo SINE Alu -9 303 1 322 206 32 95 chr3 20268868 20268994 -207255584 + MIR3 SINE MIR 90 207 -1 2324 114 0 0 chr3 20269230 20269538 -207255040 - AluSp SINE Alu -4 309 2 298 22 65 0 chr3 20269538 20269584 -207254994 + T-rich Low_complexity Low_complexity 2 50 0 2368 67 3 0 chr3 20269584 20269866 -207254712 - AluY SINE Alu -28 283 1 2000 144 0 26 chr3 20269866 20270172 -207254406 - AluJb SINE Alu -14 298 1 252 184 114 53 chr3 20270283 20270397 -207254181 - MER113 DNA MER1_type? -400 121 1 2098 127 0 0 chr3 20270942 20271245 -207253333 - AluSx SINE Alu 0 303 1 21 0 0 0 chr3 20271542 20271563 -207253015 + AT_rich Low_complexity Low_complexity 1 21 0 2326 104 3 0 chr3 20271817 20272115 -207252463 - AluSx SINE Alu -8 304 6 2236 116 0 13 chr3 20272142 20272307 -207252271 - AluSx SINE Alu -14 298 137 2347 84 23 3 chr3 20272307 20272606 -207251972 - AluSc SINE Alu -4 305 1 1376 140 0 5 chr3 20272606 20272742 -207251836 - AluSx SINE Alu -177 135 1 2236 116 0 13 chr3 20272606 20272742 -207251836 - AluSx SINE Alu -175 137 1 2400 105 0 3 chr3 20272779 20273093 -207251485 - AluSq SINE Alu 0 313 1 1895 159 6 16 chr3 20273397 20273712 -207250866 + AluJo SINE Alu 1 312 0 2044 101 7 4 chr3 20274378 20274655 -207249923 + AluSc SINE Alu 1 278 -31 234 0 0 0 chr3 20274658 20274684 -207249894 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 204 344 16 0 chr3 20274694 20274755 -207249823 - MIR SINE MIR -117 91 30 505 216 24 8 chr3 20274826 20274951 -207249627 + Charlie5 DNA MER1_type 7 133 -2479 * 1932 143 58 0 chr3 20274947 20275310 -207249268 + Charlie5 DNA MER1_type 2241 2624 0 181 326 93 0 chr3 20275782 20275868 -207248710 - MIR3 SINE MIR -1 207 114 2443 97 0 0 chr3 20278812 20279122 -207245456 + AluSx SINE Alu 1 310 -2 201 74 0 0 chr3 20280532 20280559 -207244019 + (TG)n Simple_repeat Simple_repeat 1 27 0 1872 146 0 14 chr3 20280616 20280896 -207243682 - AluJb SINE Alu -18 294 19 617 221 0 8 chr3 20280933 20281055 -207243523 - FLAM_A SINE Alu -4 138 18 1942 150 3 35 chr3 20281086 20281228 -207243350 + AluJb SINE Alu 1 146 -166 2198 108 0 0 chr3 20281228 20281551 -207243027 + AluSx SINE Alu 1 323 0 1942 150 3 35 chr3 20281551 20281720 -207242858 + AluJb SINE Alu 146 303 -9 2071 140 3 13 chr3 20281728 20282036 -207242542 + AluSx SINE Alu 1 305 -7 1968 67 0 4 chr3 20282143 20282409 -207242169 - AluY SINE Alu 0 310 46 1288 171 14 46 chr3 20282476 20282756 -207241822 - AluJb SINE Alu -2 310 40 1460 170 92 3 chr3 20282962 20283244 -207241334 + AluJo SINE Alu 1 307 -5 265 336 25 34 chr3 20283537 20283656 -207240922 + L2 LINE L2 3137 3254 -18 2129 141 0 0 chr3 20283873 20284185 -207240393 - AluJb SINE Alu 0 312 1 222 250 56 0 chr3 20284654 20284726 -207239852 + MIR3 SINE MIR 109 184 -24 241 342 0 43 chr3 20285659 20285820 -207238758 + G-rich Low_complexity Low_complexity 6 159 0 1638 174 25 0 chr3 20286494 20286769 -207237809 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 20286791 20286811 -207237767 + (CA)n Simple_repeat Simple_repeat 1 20 0 2173 119 3 3 chr3 20286863 20287174 -207237404 - AluSx SINE Alu -1 311 1 245 259 188 36 chr3 20287247 20287347 -207237231 + MIR SINE MIR 4 124 -138 2164 99 26 10 chr3 20287347 20287650 -207236928 - AluY SINE Alu -3 308 1 245 259 188 36 chr3 20287650 20287661 -207236917 + MIR SINE MIR 124 132 -130 908 108 0 43 chr3 20287972 20288111 -207236467 + FLAM_C SINE Alu 1 133 0 1957 123 41 17 chr3 20288302 20288595 -207235983 + AluJb SINE Alu 1 300 -12 322 269 90 21 chr3 20288903 20289048 -207235530 - HAL1 LINE L1 -1606 901 747 869 218 39 0 chr3 20289048 20289227 -207235351 - MER5A DNA MER1_type 0 189 4 691 219 76 19 chr3 20289287 20289497 -207235081 - HAL1 LINE L1 -1852 655 434 240 246 223 40 chr3 20289519 20289694 -207234884 - HAL1 LINE L1 -2159 348 142 476 241 173 11 chr3 20289799 20289990 -207234588 + MIR SINE MIR 25 246 -16 216 0 0 0 chr3 20289990 20290014 -207234564 + (TG)n Simple_repeat Simple_repeat 2 25 0 2210 129 3 0 chr3 20290015 20290318 -207234260 - AluSx SINE Alu -8 304 1 265 288 0 0 chr3 20290344 20290403 -207234175 - HAL1 LINE L1 -2439 68 10 2273 96 7 0 chr3 20290476 20290778 -207233800 + AluSc SINE Alu 1 304 -5 406 243 60 39 chr3 20290794 20290939 -207233639 - MIR3 SINE MIR -68 140 15 770 209 25 12 chr3 20292171 20292334 -207232244 + FRAM SINE Alu 1 165 -1 1113 103 157 0 chr3 20292368 20292553 -207232025 + L1PB4 LINE L1 5941 6154 -2 252 221 45 36 chr3 20292563 20292684 -207231894 - MIR SINE MIR -61 147 19 1866 146 10 3 chr3 20293000 20293295 -207231283 - AluJo SINE Alu -15 297 1 935 240 53 0 chr3 20293978 20294186 -207230392 - MER58A DNA MER1_type -1 223 5 2283 83 4 0 chr3 20294742 20295020 -207229558 + AluSq SINE Alu 17 295 -18 3152 107 43 14 chr3 20295047 20295157 -207229421 + L1MB3 LINE L1 5677 5782 -401 2016 151 7 3 chr3 20295157 20295456 -207229122 + AluJb SINE Alu 1 300 -12 3152 107 43 14 chr3 20295456 20295831 -207228747 + L1MB3 LINE L1 5782 6176 -7 922 242 278 0 chr3 20296815 20297178 -207227400 - L2 LINE L2 -27 3286 2823 227 134 60 75 chr3 20297180 20297247 -207227331 + L2 LINE L2 3207 3272 0 1538 152 63 40 chr3 20298027 20298401 -207226177 - AluJo SINE Alu 0 381 1 464 196 20 39 chr3 20298570 20298672 -207225906 + MER5A DNA MER1_type 14 113 -76 217 319 81 16 chr3 20299169 20299354 -207225224 - L2 LINE L2 -228 3044 2848 273 298 61 8 chr3 20300432 20300563 -207224015 - L2 LINE L2 -189 3083 2946 1716 151 95 0 chr3 20300630 20300915 -207223663 + AluJo SINE Alu 1 312 0 2202 195 109 10 chr3 20301178 20301692 -207222886 - L1MD2 LINE L1 -268 6091 5527 877 59 67 0 chr3 20301692 20301811 -207222767 + MLT2D LTR ERVL 1 127 -287 753 179 0 0 chr3 20301815 20301927 -207222651 + FLAM_A SINE Alu 4 115 -27 1657 148 13 52 chr3 20301944 20302077 -207222501 + MLT2C2 LTR ERVL 115 252 -212 1994 160 0 6 chr3 20302077 20302389 -207222189 + AluJb SINE Alu 1 310 -2 1657 148 13 52 chr3 20302389 20302560 -207222018 + MLT2C2 LTR ERVL 252 407 -57 235 202 8 48 chr3 20302593 20302717 -207221861 + CT-rich Low_complexity Low_complexity 1 119 0 225 100 0 0 chr3 20302754 20302784 -207221794 + MLT2C2 LTR ERVL 489 518 -2 233 188 0 0 chr3 20302822 20302886 -207221692 + L1MC4 LINE L1 6640 6703 -1339 296 203 27 0 chr3 20302886 20302960 -207221618 + (TATG)n Simple_repeat Simple_repeat 2 77 0 466 122 265 0 chr3 20302973 20303071 -207221507 - AluJb SINE Alu -178 134 11 2532 182 18 27 chr3 20303090 20303172 -207221406 - L1MD2 LINE L1 -743 5403 5322 2377 100 3 3 chr3 20303172 20303483 -207221095 - AluSp SINE Alu -2 311 1 2532 182 18 27 chr3 20303483 20304171 -207220407 - L1MD2 LINE L1 -824 5322 4745 7977 128 39 32 chr3 20304171 20304329 -207220249 - Tigger2 DNA MER2_type -1 2717 2562 1835 178 3 19 chr3 20304329 20304644 -207219934 - AluJo SINE Alu -2 310 1 7977 128 39 32 chr3 20304644 20304748 -207219830 - Tigger2 DNA MER2_type -156 2562 2460 2348 107 0 0 chr3 20304748 20305048 -207219530 + AluSc SINE Alu 1 300 -9 7977 128 39 32 chr3 20305048 20306146 -207218432 - Tigger2 DNA MER2_type -258 2460 1347 520 259 26 0 chr3 20306146 20306262 -207218316 - FLAM_C SINE Alu -23 120 2 1136 159 150 35 chr3 20306312 20306539 -207218039 - AluJo SINE Alu -24 288 36 548 154 0 11 chr3 20306545 20306636 -207217942 - L1MC1 LINE L1 -13 6320 6231 358 165 3 75 chr3 20306639 20306786 -207217792 - L1M LINE L1 -772 5412 4611 1673 141 12 4 chr3 20306792 20307040 -207217538 + AluJo SINE Alu 25 274 -38 4223 229 92 35 chr3 20307042 20307287 -207217291 - L1MD2 LINE L1 -1696 4450 4221 1967 166 0 3 chr3 20307287 20307595 -207216983 + AluJb SINE Alu 1 307 -5 4223 229 92 35 chr3 20307595 20308846 -207215732 - L1MD2 LINE L1 -1925 4221 2868 1164 241 93 59 chr3 20308990 20309627 -207214951 - L1ME3A LINE L1 -326 5844 5159 2182 113 0 3 chr3 20309627 20309918 -207214660 - AluSx SINE Alu -22 290 1 1164 241 93 59 chr3 20309918 20310077 -207214501 - L1ME3A LINE L1 -1011 5159 5007 831 141 0 83 chr3 20310079 20310235 -207214343 - FLAM_C SINE Alu 0 143 1 590 285 62 10 chr3 20310248 20310536 -207214042 - L1ME3A LINE L1 -1147 4999 4697 225 116 0 70 chr3 20310606 20310649 -207213929 + LTR62 LTR ERVK 614 653 -66 911 142 18 138 chr3 20310788 20310934 -207213644 - L1PA16 LINE L1 0 6156 5994 2423 96 0 0 chr3 20310934 20311236 -207213342 - AluSx SINE Alu -10 302 1 911 142 18 138 chr3 20311236 20311320 -207213258 - L1PA16 LINE L1 -162 5994 5901 9605 47 103 3 chr3 20311320 20312524 -207212054 - SVA Other Other -5 1381 58 258 32 0 0 chr3 20312524 20312555 -207212023 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 911 142 18 138 chr3 20312555 20312618 -207211960 - L1PA16 LINE L1 -252 5904 5904 752 300 93 29 chr3 20312863 20313509 -207211069 + L2 LINE L2 2001 2687 -627 1879 85 0 0 chr3 20313559 20313795 -207210783 - AluY SINE Alu -16 295 60 2333 100 0 3 chr3 20313956 20314257 -207210321 + AluSc SINE Alu 1 300 -9 21 0 0 0 chr3 20314398 20314419 -207210159 + AT_rich Low_complexity Low_complexity 1 21 0 278 213 0 0 chr3 20315273 20315320 -207209258 - AluJb SINE Alu -185 117 71 250 250 19 0 chr3 20315305 20315357 -207209221 - AluSp SINE Alu -115 188 136 * 895 141 60 148 chr3 20315363 20315451 -207209127 - L1MD2 LINE L1 0 6359 6265 2626 56 0 0 chr3 20315451 20315754 -207208824 - AluY SINE Alu -8 303 1 1687 192 0 32 chr3 20315757 20316065 -207208513 - AluJo SINE Alu -10 302 5 895 141 60 148 chr3 20316065 20316256 -207208322 - L1MD2 LINE L1 -96 6263 6101 496 297 26 31 chr3 20316359 20316554 -207208024 + MIR SINE MIR 57 250 -12 1167 196 159 4 chr3 20316579 20316844 -207207734 - AluJo SINE Alu 0 304 2 777 143 0 8 chr3 20317045 20317178 -207207400 - FLAM_C SINE Alu 0 133 2 512 284 101 0 chr3 20317238 20317407 -207207171 - L3 LINE CR1 -292 1285 1100 718 279 156 32 chr3 20317567 20318233 -207206345 + HAL1 LINE L1 7 782 -1725 1817 224 87 34 chr3 20318236 20318882 -207205696 + HAL1 LINE L1 840 1519 -988 751 158 8 0 chr3 20318888 20319008 -207205570 + FLAM_C SINE Alu 2 122 -21 300 111 0 0 chr3 20319008 20319053 -207205525 + (TA)n Simple_repeat Simple_repeat 1 45 0 228 209 22 44 chr3 20319058 20319149 -207205429 + L1MC4 LINE L1 6615 6703 -1339 270 176 0 0 chr3 20319152 20319203 -207205375 + (TA)n Simple_repeat Simple_repeat 2 52 0 237 287 0 0 chr3 20319209 20319296 -207205282 + L1MC4 LINE L1 6614 6700 -1342 311 322 0 0 chr3 20319299 20319389 -207205189 + L1MC4 LINE L1 6614 6703 -1339 * 318 311 0 0 chr3 20319309 20319399 -207205179 - L1MC4 LINE L1 -1339 6703 6614 707 184 0 0 chr3 20319439 20319553 -207205025 + FLAM_A SINE Alu 16 129 -13 805 240 96 52 chr3 20319553 20319714 -207204864 + HAL1 LINE L1 1527 1706 -801 2101 122 3 3 chr3 20319714 20320010 -207204568 - AluSq SINE Alu -17 296 1 805 240 96 52 chr3 20320010 20320119 -207204459 + HAL1 LINE L1 1706 1809 -698 633 238 65 9 chr3 20320208 20320422 -207204156 + HAL1 LINE L1 2049 2274 -233 962 211 119 56 chr3 20320434 20320483 -207204095 - MLT1F LTR MaLR 0 593 549 1677 118 75 25 chr3 20320483 20320763 -207203815 - AluSx SINE Alu -18 294 1 962 211 119 56 chr3 20320763 20321182 -207203396 - MLT1F LTR MaLR -44 549 1 233 232 12 24 chr3 20321185 20321267 -207203311 + HAL1 LINE L1 2285 2365 -142 1204 166 0 37 chr3 20322775 20322992 -207201586 + MER3 DNA MER1_type 1 209 0 1630 165 44 34 chr3 20323232 20323529 -207201049 + AluJb SINE Alu 1 300 -12 191 325 50 12 chr3 20323652 20323732 -207200846 - L2 LINE L2 -5 3308 3226 926 127 0 15 chr3 20323785 20323919 -207200659 - AluSq SINE Alu -33 280 149 279 26 26 0 chr3 20323923 20323962 -207200616 + (TTTTG)n Simple_repeat Simple_repeat 1 165 0 2137 113 0 11 chr3 20323962 20324246 -207200332 - AluSx SINE Alu -31 281 1 815 244 169 12 chr3 20324280 20324644 -207199934 - L2 LINE L2 -147 3166 2750 339 335 72 20 chr3 20324703 20324855 -207199723 + L1ME4a LINE L1 5714 5873 -248 1708 154 52 11 chr3 20325677 20325972 -207198606 - AluSg SINE Alu 0 306 1 519 60 0 0 chr3 20326874 20326941 -207197637 + (T)n Simple_repeat Simple_repeat 1 67 0 1498 200 33 26 chr3 20327168 20327473 -207197105 + AluJo SINE Alu 1 307 -5 2464 68 0 37 chr3 20327791 20328113 -207196465 - AluY SINE Alu -1 310 1 1192 111 12 0 chr3 20328381 20328552 -207196026 - AluSg/x SINE Alu -7 305 133 2370 115 0 0 chr3 20328552 20328864 -207195714 - AluSx SINE Alu 0 312 1 2361 94 0 10 chr3 20329252 20329559 -207195019 + AluSq SINE Alu 1 304 -9 2238 121 0 0 chr3 20329573 20329880 -207194698 + AluSx SINE Alu 1 307 -5 1567 181 48 48 chr3 20330699 20331009 -207193569 + AluJo SINE Alu 1 310 -2 256 307 61 26 chr3 20331054 20331168 -207193410 - MIR SINE MIR -88 174 57 208 307 95 49 chr3 20331217 20331422 -207193156 + MIR SINE MIR 34 256 -6 1847 137 18 11 chr3 20331490 20331774 -207192804 + AluJb SINE Alu 27 312 0 2558 74 0 0 chr3 20331834 20332145 -207192433 - AluY SINE Alu 0 311 1 192 288 68 14 chr3 20332372 20332445 -207192133 - MIR3 SINE MIR -29 179 103 230 196 201 59 chr3 20332830 20332931 -207191647 - L1ME4a LINE L1 -175 5946 5861 1744 151 97 0 chr3 20332931 20333210 -207191368 - AluJb SINE Alu -6 306 1 230 196 201 59 chr3 20333210 20333327 -207191251 - L1ME4a LINE L1 -260 5861 5697 2247 120 0 3 chr3 20333349 20333650 -207190928 - AluSx SINE Alu -12 300 1 1180 262 119 32 chr3 20333651 20333740 -207190838 - L2 LINE L2 -1515 1799 1719 2012 135 7 16 chr3 20333740 20334044 -207190534 - AluSx SINE Alu -11 301 1 2468 95 0 0 chr3 20334044 20334350 -207190228 - AluSx SINE Alu -6 306 1 1180 262 119 32 chr3 20334350 20334685 -207189893 - L2 LINE L2 -1595 1719 1333 1829 155 13 28 chr3 20334685 20335002 -207189576 + AluSx SINE Alu 1 312 0 180 316 102 49 chr3 20335260 20335504 -207189074 - L2 LINE L2 -173 3099 2843 535 264 75 29 chr3 20337606 20337780 -207186798 - MIR3 SINE MIR -4 204 23 2330 125 0 0 chr3 20338112 20338425 -207186153 - AluSq SINE Alu 0 313 1 338 293 204 0 chr3 20338659 20338816 -207185762 - MIR SINE MIR -13 249 61 2291 105 0 3 chr3 20341157 20341453 -207183125 + AluSx SINE Alu 1 295 -17 1950 156 16 3 chr3 20341830 20342137 -207182441 + AluJo SINE Alu 1 311 -1 205 324 58 72 chr3 20342270 20342397 -207182181 - L2 LINE L2 -11 3261 3135 1656 158 59 7 chr3 20342397 20342669 -207181909 + AluJo SINE Alu 1 286 -26 205 324 58 72 chr3 20342669 20342680 -207181898 - L2 LINE L2 -137 3135 3125 368 256 39 62 chr3 20343651 20343780 -207180798 - MER103 DNA DNA 0 166 41 1769 148 0 79 chr3 20344392 20344722 -207179856 + AluJo SINE Alu 1 304 -8 301 299 142 15 chr3 20345855 20345989 -207178589 + MIR3 SINE MIR 17 167 -41 340 305 52 46 chr3 20349801 20349975 -207174603 - MER5A DNA MER1_type -1 188 14 266 313 140 18 chr3 20350207 20350373 -207174205 - MIR SINE MIR -49 213 30 1542 162 0 0 chr3 20350814 20351048 -207173530 - AluJo SINE Alu -78 234 1 5617 204 70 46 chr3 20351436 20352402 -207172176 - L1MB8 LINE L1 0 6178 5237 2469 75 10 0 chr3 20352402 20352708 -207171870 - AluSc SINE Alu 0 309 1 5617 204 70 46 chr3 20352708 20354389 -207170189 - L1MB8 LINE L1 -941 5237 3476 744 248 130 90 chr3 20354766 20355059 -207169519 + L2 LINE L2 2307 2624 -690 2275 97 0 29 chr3 20355059 20355367 -207169211 + AluSg SINE Alu 1 299 -11 744 248 130 90 chr3 20355367 20355505 -207169073 + L2 LINE L2 2624 2755 -559 2422 87 7 3 chr3 20355657 20355966 -207168612 - AluSx SINE Alu -2 310 1 257 222 28 42 chr3 20355987 20356059 -207168519 - L2 LINE L2 -44 3269 3199 2270 124 0 0 chr3 20356406 20356705 -207167873 - AluSx SINE Alu -13 299 1 247 234 0 0 chr3 20356810 20356857 -207167721 + MER5A DNA MER1_type 9 55 -134 1068 152 24 0 chr3 20357301 20357466 -207167112 + AluJo SINE Alu 1 169 -143 492 230 75 11 chr3 20357991 20358165 -207166413 - L2 LINE L2 -189 3083 2899 205 133 0 0 chr3 20358882 20358912 -207165666 - MIR SINE MIR -118 144 115 1746 148 4 0 chr3 20359485 20359790 -207164788 - AluJb SINE Alu 0 316 11 304 172 203 0 chr3 20360138 20360202 -207164376 - MIR SINE MIR -109 153 77 2657 153 19 19 chr3 20360341 20360767 -207163811 + MSTB LTR MaLR 1 426 0 7000 151 59 40 chr3 20360767 20360874 -207163704 + MSTB-int LTR MaLR 1 104 -1547 2131 129 3 3 chr3 20360874 20361168 -207163410 + AluSx SINE Alu 1 294 -18 7000 151 59 40 chr3 20361168 20361531 -207163047 + MSTB-int LTR MaLR 104 458 -1193 2108 146 0 13 chr3 20361531 20361846 -207162732 - AluSq SINE Alu 0 313 3 7000 151 59 40 chr3 20361846 20362692 -207161886 + MSTB-int LTR MaLR 458 1344 -307 249 96 0 0 chr3 20362692 20362730 -207161848 + AluSx SINE Alu 1 34 -268 1535 199 181 24 chr3 20362739 20363202 -207161376 - LTR10A LTR ERV1 -61 548 13 2152 103 0 14 chr3 20363206 20363317 -207161261 + AluSx SINE Alu 26 137 -175 2310 105 0 10 chr3 20363317 20363623 -207160955 + AluSq SINE Alu 1 303 -10 2152 103 0 14 chr3 20363623 20363793 -207160785 + AluSx SINE Alu 137 303 -9 1564 89 13 188 chr3 20363793 20363995 -207160583 + MSTB-int LTR MaLR 1336 1572 -79 1762 82 0 0 chr3 20363995 20364214 -207160364 - AluSg/x SINE Alu -9 303 85 1564 89 13 188 chr3 20364214 20364307 -207160271 + MSTB-int LTR MaLR 1572 1680 29 1954 155 0 7 chr3 20364307 20364603 -207159975 + AluJb SINE Alu 1 294 -18 2220 105 0 56 chr3 20364606 20364930 -207159648 + AluSq SINE Alu 1 306 -7 1564 89 13 188 chr3 20364930 20365012 -207159566 + MSTB-int LTR MaLR 1556 1651 0 2660 160 17 0 chr3 20365012 20365431 -207159147 + MSTB LTR MaLR 1 426 0 206 246 77 15 chr3 20365431 20365496 -207159082 + MIR3 SINE MIR 99 167 -41 1054 209 22 13 chr3 20366192 20366417 -207158161 + AluJo SINE Alu 1 227 -85 967 160 51 6 chr3 20366906 20367062 -207157516 - AluJo SINE Alu -149 163 1 2418 100 0 0 chr3 20367065 20367375 -207157203 - AluSx SINE Alu -2 310 1 2401 63 0 7 chr3 20367439 20367740 -207156838 + AluY SINE Alu 1 299 -12 196 111 0 56 chr3 20367870 20367906 -207156672 - MIR SINE MIR -112 150 117 4007 154 70 42 chr3 20367917 20368573 -207156005 - L1MB7 LINE L1 0 6184 5547 1802 150 27 31 chr3 20368573 20368867 -207155711 - AluJo SINE Alu -19 293 1 4007 154 70 42 chr3 20368867 20369056 -207155522 - L1MB7 LINE L1 -637 5547 5312 1972 140 21 0 chr3 20369056 20369342 -207155236 - AluSx SINE Alu -20 292 1 4007 154 70 42 chr3 20369342 20369373 -207155205 - L1MB7 LINE L1 -872 5312 5283 200 236 0 36 chr3 20369525 20369580 -207154998 - MIR SINE MIR -112 150 98 2040 142 23 3 chr3 20369580 20369883 -207154695 + AluJo SINE Alu 1 309 -3 2328 112 0 0 chr3 20369887 20370191 -207154387 + AluSx SINE Alu 1 304 -8 258 328 151 8 chr3 20370216 20370454 -207154124 + L3 LINE CR1 1166 1437 -140 2419 75 0 13 chr3 20370741 20371091 -207153487 - AluSq SINE Alu 0 356 11 296 24 0 24 chr3 20371092 20371134 -207153444 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 1628 195 17 7 chr3 20371237 20371524 -207153054 - AluJo SINE Alu -22 290 1 1764 98 12 12 chr3 20371674 20371918 -207152660 + AluSx SINE Alu 50 293 -19 744 129 32 0 chr3 20371918 20372042 -207152536 + Tigger1 DNA MER2_type 484 611 -1807 1808 174 44 49 chr3 20372044 20372176 -207152402 - L1M4c LINE L1 -5605 779 648 1986 160 3 0 chr3 20372176 20372476 -207152102 - AluJb SINE Alu -11 301 1 1808 174 44 49 chr3 20372476 20372750 -207151828 - L1M4c LINE L1 -5736 648 375 2018 112 7 7 chr3 20372857 20373143 -207151435 + AluSg SINE Alu 1 286 -24 736 240 51 39 chr3 20373155 20373409 -207151169 + L2 LINE L2 2905 3161 -152 1378 151 77 5 chr3 20373409 20373772 -207150806 - LTR65 LTR ERV1 0 669 224 1659 146 75 117 chr3 20373787 20374273 -207150305 + MER90 LTR ERV1 72 537 -77 1042 173 4 67 chr3 20374373 20374449 -207150129 - AluJb SINE Alu -101 211 132 2387 73 0 10 chr3 20374449 20374749 -207149829 - AluY SINE Alu -14 297 1 1042 173 4 67 chr3 20374749 20374897 -207149681 - AluJb SINE Alu -180 132 1 2205 120 0 0 chr3 20374926 20375227 -207149351 - AluSg SINE Alu -8 302 2 1965 138 17 0 chr3 20375291 20375588 -207148990 - AluSg SINE Alu -7 303 2 315 195 23 11 chr3 20375591 20375678 -207148900 - L1M4 LINE L1 -842 5304 5217 431 20 0 0 chr3 20375811 20375862 -207148716 + AluY SINE Alu 6 56 -256 1556 135 20 20 chr3 20376042 20376199 -207148379 - AluSx SINE Alu -17 295 139 198 0 0 0 chr3 20376199 20376221 -207148357 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2304 71 0 0 chr3 20376221 20376504 -207148074 - AluSp SINE Alu -30 283 1 1556 135 20 20 chr3 20376504 20376590 -207147988 - AluSx SINE Alu -171 141 51 7003 67 5 8 chr3 20376592 20377550 -207147028 - MER11C LTR ERVK 0 1071 28 440 188 25 0 chr3 20377550 20377630 -207146948 - AluY SINE Alu -235 83 2 206 326 91 46 chr3 20377639 20377713 -207146865 + MER5A DNA MER1_type 7 76 -113 2150 122 7 0 chr3 20377713 20378017 -207146561 + AluSq SINE Alu 1 306 -7 206 326 91 46 chr3 20378017 20378117 -207146461 + MER5A DNA MER1_type 76 189 0 940 128 0 0 chr3 20378147 20378280 -207146298 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 20378849 20378874 -207145704 + AT_rich Low_complexity Low_complexity 1 25 0 1001 139 0 0 chr3 20378889 20379040 -207145538 - AluSg/x SINE Alu -24 286 136 252 209 0 0 chr3 20379089 20379132 -207145446 - AluJ/monomer SINE Alu -258 44 2 810 254 23 0 chr3 20379137 20379357 -207145221 - L1M4 LINE L1 -2187 3959 3735 2364 87 0 0 chr3 20379387 20379697 -207144881 - AluY SINE Alu -1 310 1 1156 112 6 0 chr3 20379734 20379895 -207144683 - AluSx SINE Alu -150 162 1 2158 97 28 0 chr3 20380403 20380693 -207143885 - AluSc SINE Alu -11 298 1 1387 167 67 7 chr3 20381124 20381393 -207143185 - AluJo SINE Alu -27 285 1 316 284 0 11 chr3 20382512 20382600 -207141978 + MIR SINE MIR 68 154 -108 1908 78 3 57 chr3 20382886 20383182 -207141396 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr3 20383184 20383206 -207141372 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2274 77 0 3 chr3 20383625 20383925 -207140653 - AluSx SINE Alu -13 299 1 234 310 58 0 chr3 20384592 20384679 -207139899 - L2 LINE L2 -2 3311 3220 369 0 0 0 chr3 20384689 20384730 -207139848 + (TTA)n Simple_repeat Simple_repeat 2 42 0 482 35 0 0 chr3 20384733 20384791 -207139787 - AluY SINE Alu -28 281 224 660 164 9 9 chr3 20384900 20385009 -207139569 + AluSg/x SINE Alu 185 296 -13 1994 145 0 3 chr3 20385009 20385320 -207139258 + AluSg SINE Alu 1 310 0 2271 91 13 0 chr3 20385326 20385633 -207138945 + AluSx SINE Alu 1 311 -1 935 216 118 50 chr3 20385643 20386042 -207138536 - L1M4 LINE L1 -1542 4604 4179 * 1361 233 52 41 chr3 20386039 20386694 -207137884 - L1MDb LINE L1 -4959 1581 910 411 342 30 43 chr3 20387224 20387525 -207137053 - L1MDb LINE L1 -6210 330 34 2165 114 0 0 chr3 20387601 20387899 -207136679 - AluSx SINE Alu -14 298 1 1561 170 67 3 chr3 20388113 20388395 -207136183 - AluJb SINE Alu -11 301 2 1549 190 13 20 chr3 20388448 20388748 -207135830 - AluJo SINE Alu -8 304 7 431 206 50 35 chr3 20388778 20388919 -207135659 - L1ME3A LINE L1 -18 6152 6010 1991 130 3 3 chr3 20388996 20389289 -207135289 - AluJb SINE Alu -9 303 11 323 340 151 5 chr3 20389389 20389664 -207134914 + L2 LINE L2 2748 3054 -218 713 167 0 0 chr3 20389861 20389969 -207134609 + FLAM_A SINE Alu 18 125 -17 663 176 30 0 chr3 20390188 20390319 -207134259 + MER5A DNA MER1_type 55 189 0 1431 185 3 28 chr3 20390422 20390709 -207133869 + AluJo SINE Alu 16 295 -17 935 122 0 34 chr3 20390862 20391009 -207133569 + FLAM_C SINE Alu 1 142 -1 364 301 80 23 chr3 20391151 20391327 -207133251 - MIR SINE MIR 0 262 77 2254 75 0 3 chr3 20391687 20391982 -207132596 + AluY SINE Alu 1 294 -17 201 39 0 0 chr3 20392017 20392043 -207132535 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1864 116 12 66 chr3 20392046 20392366 -207132212 + AluSx SINE Alu 1 303 -9 466 307 79 46 chr3 20392375 20392643 -207131935 + L1M4 LINE L1 3962 4220 -1926 305 93 19 0 chr3 20392643 20392697 -207131881 + (TA)n Simple_repeat Simple_repeat 2 56 0 466 307 79 46 chr3 20392697 20392914 -207131664 + L1M4 LINE L1 4220 4428 -1718 2221 114 0 0 chr3 20392914 20393222 -207131356 + AluSx SINE Alu 1 308 -4 466 307 79 46 chr3 20393222 20393728 -207130850 + L1M4 LINE L1 4428 4992 -1154 1743 181 3 3 chr3 20393728 20394031 -207130547 + AluJb SINE Alu 7 309 -3 466 307 79 46 chr3 20394031 20394076 -207130502 + L1M4 LINE L1 4992 5034 -1112 2062 109 3 62 chr3 20394085 20394407 -207130171 + AluSx SINE Alu 1 303 -9 1049 82 7 0 chr3 20394506 20394641 -207129937 + AluSq/x SINE Alu 1 136 -176 2412 72 0 0 chr3 20395227 20395531 -207129047 + AluY SINE Alu 1 304 -7 1155 69 0 0 chr3 20395607 20395752 -207128826 + AluSq/x SINE Alu 1 145 -167 2134 95 14 0 chr3 20395752 20396047 -207128531 + AluSq SINE Alu 1 299 -14 2179 117 3 0 chr3 20396398 20396706 -207127872 - AluSq SINE Alu -4 309 1 5042 44 15 4 chr3 20397017 20398129 -207126449 - MER11A LTR ERVK 0 1266 1 2135 105 0 22 chr3 20398141 20398456 -207126122 - AluSg SINE Alu -1 309 2 249 324 124 7 chr3 20399128 20399273 -207125305 - MIR3 SINE MIR -18 190 29 1950 148 0 0 chr3 20399353 20399643 -207124935 + AluSx SINE Alu 1 290 -22 818 81 88 29 chr3 20399704 20399840 -207124738 - L1MB3 LINE L1 -9 6174 6031 1752 74 0 4 chr3 20400154 20400384 -207124194 + AluSq SINE Alu 84 312 -1 778 305 166 15 chr3 20400479 20401020 -207123558 + L2 LINE L2 2127 2749 -565 1788 119 19 47 chr3 20401020 20401340 -207123238 + AluSx SINE Alu 1 311 -1 358 235 59 0 chr3 20401340 20401425 -207123153 + L2 LINE L2 3214 3303 -10 1128 167 32 23 chr3 20401433 20401604 -207122974 - AluJb SINE Alu -5 307 132 2259 99 0 6 chr3 20401604 20401917 -207122661 - AluSx SINE Alu -1 311 1 1128 167 32 23 chr3 20401917 20401966 -207122612 - AluJb SINE Alu -180 132 85 2676 189 50 68 chr3 20402016 20402767 -207121811 + L1 LINE L1 3791 4554 -1592 1632 109 0 0 chr3 20402767 20402988 -207121590 - AluSg/x SINE Alu -7 303 83 2676 189 50 68 chr3 20402988 20403086 -207121492 + L1 LINE L1 4554 4652 -1494 1700 187 0 7 chr3 20403086 20403386 -207121192 + AluJo SINE Alu 1 298 -14 2676 189 50 68 chr3 20403386 20403454 -207121124 + L1 LINE L1 4652 4630 -1516 2226 100 7 7 chr3 20403454 20403763 -207120815 + AluSc SINE Alu 1 309 0 2676 189 50 68 chr3 20403763 20403900 -207120678 + L1 LINE L1 4629 4767 -1379 1314 99 0 0 chr3 20404001 20404172 -207120406 - AluSx SINE Alu -141 171 1 2344 50 7 7 chr3 20404219 20404518 -207120060 - AluY SINE Alu -12 299 1 308 287 32 84 chr3 20404518 20404691 -207119887 - L1ME4a LINE L1 -237 5884 5741 1483 207 13 13 chr3 20404691 20404995 -207119583 - AluJo SINE Alu -8 304 1 308 287 32 84 chr3 20404995 20405115 -207119463 - L1ME4a LINE L1 -380 5741 5616 832 161 15 0 chr3 20405116 20405246 -207119332 + AluJb SINE Alu 2 133 -179 1698 106 75 0 chr3 20405319 20405574 -207119004 + AluSg SINE Alu 1 274 -36 24 0 0 0 chr3 20405574 20405598 -207118980 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr3 20411820 20411850 -207112728 + (CCCCAG)n Simple_repeat Simple_repeat 6 35 0 545 178 50 0 chr3 20416519 20416620 -207107958 + MIR SINE MIR 104 209 -53 2828 0 0 0 chr3 20417782 20418092 -207106486 - AluYa5 SINE Alu -1 310 1 205 200 17 26 chr3 20419003 20419118 -207105460 + G-rich Low_complexity Low_complexity 5 118 0 256 247 26 0 chr3 20419793 20419870 -207104708 + C-rich Low_complexity Low_complexity 2 80 0 1894 137 0 0 chr3 20424658 20424920 -207099658 - AluJb SINE Alu -50 262 1 240 310 18 9 chr3 20426371 20426484 -207098094 + (CA)n Simple_repeat Simple_repeat 2 115 0 2405 35 11 3 chr3 20427649 20427962 -207096616 - AluY SINE Alu 0 315 1 542 202 64 53 chr3 20430281 20430514 -207094064 + LTR45B LTR ERV1 324 489 0 1286 144 88 48 chr3 20430592 20430842 -207093736 - AluJb SINE Alu -19 293 34 451 127 0 0 chr3 20430842 20430905 -207093673 - AluJo SINE Alu -166 146 84 838 194 11 6 chr3 20430909 20431084 -207093494 + MER58A DNA MER1_type 45 220 -4 268 339 83 16 chr3 20431153 20431274 -207093304 + MIR SINE MIR 21 149 -113 337 164 30 0 chr3 20432494 20432561 -207092017 + L1MC3 LINE L1 6109 6177 -1608 2752 174 82 55 chr3 20432622 20433259 -207091319 - L1MC3 LINE L1 -166 7619 6959 2415 74 10 16 chr3 20433259 20433570 -207091008 + AluSc SINE Alu 1 309 0 2752 174 82 55 chr3 20433570 20433655 -207090923 - L1MC3 LINE L1 -826 6959 6878 974 148 59 24 chr3 20433889 20434058 -207090520 - FRAM SINE Alu -1 175 1 341 270 223 19 chr3 20434233 20434444 -207090134 + MLT1K LTR MaLR 330 583 -5 2266 107 0 7 chr3 20434813 20435113 -207089465 + AluSx SINE Alu 3 300 -12 2302 100 3 0 chr3 20435782 20436073 -207088505 + AluSq SINE Alu 1 292 -21 208 186 116 0 chr3 20436489 20436532 -207088046 - L3 LINE CR1 -2 1575 1528 456 19 0 0 chr3 20436692 20436745 -207087833 + (CA)n Simple_repeat Simple_repeat 2 54 0 1212 123 0 6 chr3 20436750 20436912 -207087666 - AluSq SINE Alu -152 161 1 23 33 0 0 chr3 20436961 20436991 -207087587 + AT_rich Low_complexity Low_complexity 1 30 0 1754 168 14 7 chr3 20436993 20437285 -207087293 + AluJo SINE Alu 1 294 -18 1977 143 19 10 chr3 20437576 20437884 -207086694 + AluJb SINE Alu 1 311 -1 2137 222 21 107 chr3 20437921 20438384 -207086194 - L1ME3 LINE L1 0 6162 5661 2194 87 62 0 chr3 20438384 20438672 -207085906 + AluSp SINE Alu 1 306 -7 2137 222 21 107 chr3 20438672 20438685 -207085893 - L1ME3 LINE L1 -501 5661 5648 1964 128 14 20 chr3 20438685 20438981 -207085597 + AluJb SINE Alu 1 294 -18 2137 222 21 107 chr3 20438981 20439418 -207085160 - L1ME3 LINE L1 -514 5648 5327 472 86 14 0 chr3 20439671 20439741 -207084837 + MER41A LTR ERV1 396 466 -88 2354 89 0 16 chr3 20439758 20440061 -207084517 + AluSx SINE Alu 1 298 -14 246 167 14 97 chr3 20440196 20440268 -207084310 - MIR SINE MIR 0 262 197 489 163 0 0 chr3 20440268 20440348 -207084230 - Tigger5 DNA MER2_type 0 2323 2244 2202 128 0 0 chr3 20440353 20440649 -207083929 + AluSx SINE Alu 1 296 -16 1781 162 38 3 chr3 20441815 20442105 -207082473 + AluJb SINE Alu 1 300 -12 2402 79 0 0 chr3 20442135 20442426 -207082152 - AluSc SINE Alu -18 291 1 1167 186 9 36 chr3 20442505 20442725 -207081853 + AluJo SINE Alu 92 305 -7 187 330 143 9 chr3 20442934 20443046 -207081532 + MIR SINE MIR 49 175 -87 717 146 81 0 chr3 20443108 20443231 -207081347 - FLAM_C SINE Alu 0 133 1 214 255 0 20 chr3 20443428 20443479 -207081099 - L3 LINE CR1 -10 1567 1518 396 0 0 0 chr3 20444460 20444504 -207080074 + (CA)n Simple_repeat Simple_repeat 2 45 0 330 26 0 0 chr3 20444503 20444542 -207080036 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 1845 166 3 7 chr3 20445706 20446001 -207078577 - AluSx SINE Alu -18 294 1 2132 109 39 0 chr3 20446014 20446298 -207078280 - AluSq SINE Alu -18 295 1 863 155 18 12 chr3 20446298 20446466 -207078112 - L1MB5 LINE L1 -346 5828 5660 2281 105 10 3 chr3 20446467 20446771 -207077807 - AluSq SINE Alu -7 306 1 2075 118 11 7 chr3 20446806 20447093 -207077485 - AluSx SINE Alu -20 292 5 2258 110 3 3 chr3 20447101 20447400 -207077178 - AluSc SINE Alu -10 299 1 2284 102 3 0 chr3 20447404 20447698 -207076880 - AluSg SINE Alu -15 295 1 793 158 84 91 chr3 20447761 20447887 -207076691 - L1MB5 LINE L1 -1015 5131 5006 1811 157 20 20 chr3 20447887 20448187 -207076391 + AluJo SINE Alu 1 300 -12 793 158 84 91 chr3 20448187 20448345 -207076233 - L1MB5 LINE L1 -1140 5006 4849 340 140 0 0 chr3 20448349 20448399 -207076179 + Alu SINE Alu 1 50 -252 1910 180 38 99 chr3 20448508 20448843 -207075735 + L1M3 LINE L1 4810 5164 -1007 1815 163 3 38 chr3 20448843 20449162 -207075416 + AluJo SINE Alu 1 308 -4 1910 180 38 99 chr3 20449162 20449363 -207075215 + L1M3 LINE L1 5164 5331 -840 1832 174 16 10 chr3 20449363 20449667 -207074911 + AluJb SINE Alu 1 306 -6 1910 180 38 99 chr3 20449667 20449792 -207074786 + L1M3 LINE L1 5331 5462 -709 6860 46 7 1 chr3 20449794 20450982 -207073596 - L1PA5 LINE L1 -28 6126 4932 686 142 0 0 chr3 20450993 20451106 -207073472 + L1MB4 LINE L1 6029 6141 -39 2055 128 10 0 chr3 20451106 20451395 -207073183 + AluSx SINE Alu 1 292 -20 1939 147 27 3 chr3 20451406 20451699 -207072879 - AluSx SINE Alu -12 300 1 648 71 0 0 chr3 20451732 20451816 -207072762 + THE1B LTR MaLR 198 281 -83 319 332 139 41 chr3 20452388 20452622 -207071956 + HAL1 LINE L1 436 710 -1797 2297 97 7 3 chr3 20452622 20452921 -207071657 + AluSq SINE Alu 2 301 -12 319 332 139 41 chr3 20452921 20453002 -207071576 + HAL1 LINE L1 710 782 -1725 317 256 68 83 chr3 20453033 20453166 -207071412 + L1MC5 LINE L1 7805 7935 -26 22 0 0 0 chr3 20453279 20453301 -207071277 + AT_rich Low_complexity Low_complexity 1 22 0 1273 98 0 6 chr3 20453548 20453711 -207070867 - AluSx SINE Alu -150 162 1 394 228 84 30 chr3 20453761 20453909 -207070669 - Charlie7 DNA MER1_type 0 2612 2474 1773 134 73 14 chr3 20453909 20454184 -207070394 + AluSx SINE Alu 11 301 -11 2774 10 0 3 chr3 20454192 20454525 -207070053 + AluYb8 SINE Alu 1 332 0 394 228 84 30 chr3 20454525 20454568 -207070010 - Charlie7 DNA MER1_type -144 2468 2400 2492 76 3 0 chr3 20454839 20455140 -207069438 + AluSp SINE Alu 1 302 -11 412 327 68 32 chr3 20455170 20455390 -207069188 + MIR SINE MIR 19 246 -16 227 328 69 23 chr3 20455505 20455636 -207068942 + MIR SINE MIR 45 181 -27 2496 62 0 0 chr3 20456024 20456329 -207068249 + AluY SINE Alu 1 305 -6 2015 131 0 7 chr3 20456553 20456859 -207067719 + AluJo SINE Alu 1 304 -8 258 116 0 0 chr3 20457864 20457907 -207066671 + (CGG)n Simple_repeat Simple_repeat 3 45 0 207 0 0 0 chr3 20458124 20458147 -207066431 + (CCGGG)n Simple_repeat Simple_repeat 4 26 0 1387 128 22 13 chr3 20458221 20458448 -207066130 + AluJo SINE Alu 1 229 -83 231 331 81 15 chr3 20458649 20458785 -207065793 - MIR SINE MIR -1 261 117 2525 65 0 40 chr3 20459319 20459642 -207064936 + AluY SINE Alu 2 311 0 1511 165 62 28 chr3 20459646 20459937 -207064641 - AluJo SINE Alu -7 305 5 2082 120 3 20 chr3 20460520 20460819 -207063759 - AluSx SINE Alu -18 294 1 1679 165 49 3 chr3 20460820 20461105 -207063473 - AluSx SINE Alu -14 298 1 2586 172 99 68 chr3 20461248 20461566 -207063012 - LTR8A LTR ERV1 0 727 420 2583 77 0 0 chr3 20461566 20461877 -207062701 + AluY SINE Alu 1 311 0 2586 172 99 68 chr3 20461877 20462196 -207062382 - LTR8A LTR ERV1 -307 420 64 2262 97 23 0 chr3 20462196 20462495 -207062083 + AluSp SINE Alu 1 306 -7 2586 172 99 68 chr3 20462495 20462560 -207062018 - LTR8A LTR ERV1 -663 64 2 1444 196 53 14 chr3 20462570 20462851 -207061727 - AluJo SINE Alu -20 292 1 2515 62 0 10 chr3 20463003 20463308 -207061270 + AluY SINE Alu 1 302 -9 2108 112 4 0 chr3 20463324 20463602 -207060976 + AluSx SINE Alu 1 279 -33 4460 73 9 4 chr3 20463602 20464163 -207060415 - LTR6A LTR ERV1 0 564 1 231 36 0 0 chr3 20464170 20464198 -207060380 + (A)n Simple_repeat Simple_repeat 1 28 0 268 282 134 40 chr3 20464245 20464484 -207060094 - MIR SINE MIR 0 262 2 256 310 65 60 chr3 20464598 20464798 -207059780 + MIR SINE MIR 13 213 -49 2628 50 0 0 chr3 20464817 20465114 -207059464 - AluY SINE Alu -14 297 1 2331 94 0 17 chr3 20465114 20465411 -207059167 - AluSc SINE Alu -16 293 1 210 239 101 87 chr3 20465648 20465757 -207058821 - MIR SINE MIR 0 262 149 2205 102 0 26 chr3 20465757 20466070 -207058508 - AluSx SINE Alu -7 305 1 210 239 101 87 chr3 20466070 20466098 -207058480 - MIR SINE MIR -113 149 123 351 0 0 0 chr3 20516307 20516315 -207008263 + (TG)n Simple_repeat Simple_repeat 1 47 0 351 0 0 0 chr3 20516315 20516354 -207008224 + (TG)n Simple_repeat Simple_repeat 2 40 0 2212 120 7 0 chr3 20516372 20516672 -207007906 - AluSx SINE Alu -10 302 1 534 266 53 19 chr3 20516929 20517136 -207007442 - L1ME3A LINE L1 0 6170 5957 831 159 8 0 chr3 20517719 20517851 -207006727 + FLAM_C SINE Alu 1 133 -10 2337 102 0 7 chr3 20518306 20518611 -207005967 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr3 20518643 20518673 -207005905 + AT_rich Low_complexity Low_complexity 1 30 0 857 148 8 0 chr3 20519028 20519156 -207005422 + FLAM_C SINE Alu 1 129 -14 2225 126 0 0 chr3 20519301 20519602 -207004976 + AluSq SINE Alu 2 302 -11 2101 132 0 13 chr3 20520857 20521161 -207003417 - AluSx SINE Alu -12 300 1 1025 233 56 69 chr3 20521270 20521647 -207002931 + L1ME3A LINE L1 5519 5890 -280 1713 176 0 4 chr3 20521650 20521929 -207002649 + AluJb SINE Alu 1 278 -34 208 293 189 28 chr3 20522150 20522256 -207002322 + MIR SINE MIR 30 152 -110 1817 142 0 50 chr3 20522505 20522828 -207001750 - AluJo SINE Alu -5 307 1 209 211 0 0 chr3 20523742 20523780 -207000798 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 721 192 0 0 chr3 20523780 20523905 -207000673 - AluJo SINE Alu -178 134 10 2164 110 7 0 chr3 20523919 20524210 -207000368 - AluSc SINE Alu -16 293 1 2528 74 0 3 chr3 20524459 20524771 -206999807 - AluY SINE Alu 0 311 1 1222 99 153 15 chr3 20524981 20525183 -206999395 + MER30 DNA MER1_type 1 230 0 23 0 0 0 chr3 20525200 20525223 -206999355 + AT_rich Low_complexity Low_complexity 1 23 0 501 181 0 0 chr3 20525864 20525958 -206998620 + FLAM_A SINE Alu 42 135 -7 26 0 0 0 chr3 20526316 20526342 -206998236 + AT_rich Low_complexity Low_complexity 1 26 0 790 173 0 15 chr3 20526676 20526809 -206997769 + FLAM_C SINE Alu 3 133 0 679 196 81 48 chr3 20526911 20527120 -206997458 - MER20 DNA MER1_type 0 219 4 21 0 0 0 chr3 20527306 20527327 -206997251 + AT_rich Low_complexity Low_complexity 1 21 0 822 203 69 36 chr3 20527345 20527621 -206996957 - L1M4 LINE L1 -1493 4653 4369 686 193 0 0 chr3 20528228 20528342 -206996236 - FLAM_A SINE Alu -19 114 1 449 242 60 33 chr3 20528342 20528557 -206996021 - L1M4 LINE L1 -1746 4400 4180 186 150 0 0 chr3 20528557 20528597 -206995981 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2718 13 0 3 chr3 20528746 20529057 -206995521 + AluYb8 SINE Alu 1 310 -8 220 326 0 23 chr3 20529332 20529418 -206995160 - MIR SINE MIR -79 183 100 1341 188 52 24 chr3 20529735 20530023 -206994555 + AluJo SINE Alu 3 298 -14 909 276 60 84 chr3 20530141 20530695 -206993883 - L2 LINE L2 -50 3263 2705 1560 187 11 7 chr3 20530696 20530980 -206993598 - AluJb SINE Alu -27 285 1 1698 170 6 10 chr3 20531158 20531469 -206993109 - AluJo SINE Alu -2 310 1 22 56 0 0 chr3 20531666 20531702 -206992876 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr3 20531702 20531726 -206992852 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2197 71 0 0 chr3 20531728 20532008 -206992570 - AluY SINE Alu -31 280 1 377 240 0 31 chr3 20532008 20532104 -206992474 - L1MC4 LINE L1 -150 7892 7800 1654 180 0 23 chr3 20533309 20533614 -206990964 + AluJo SINE Alu 1 298 -14 1366 196 6 55 chr3 20533884 20534058 -206990520 - AluJo SINE Alu -16 296 142 2239 64 54 0 chr3 20534058 20534353 -206990225 - AluY SINE Alu 0 311 1 1366 196 6 55 chr3 20534353 20534489 -206990089 - AluJo SINE Alu -170 142 1 1947 138 13 0 chr3 20535275 20535579 -206988999 + AluSx SINE Alu 1 308 -4 395 268 189 31 chr3 20535579 20535590 -206988988 + MLT1D LTR MaLR 207 215 -290 243 0 0 0 chr3 20535590 20535617 -206988961 + (CA)n Simple_repeat Simple_repeat 2 28 0 395 268 189 31 chr3 20535617 20535832 -206988746 + MLT1D LTR MaLR 215 479 -26 1877 127 18 0 chr3 20535832 20536116 -206988462 + AluSq SINE Alu 1 289 -24 395 268 189 31 chr3 20536116 20536142 -206988436 + MLT1D LTR MaLR 479 500 -5 763 296 56 5 chr3 20536155 20536371 -206988207 - MIR SINE MIR -27 235 9 448 288 16 16 chr3 20537221 20537346 -206987232 - MIR SINE MIR -118 144 20 468 99 0 0 chr3 20537705 20537776 -206986802 + (GA)n Simple_repeat Simple_repeat 2 72 0 225 94 0 0 chr3 20537838 20537870 -206986708 + (T)n Simple_repeat Simple_repeat 1 32 0 1470 91 0 14 chr3 20538416 20538624 -206985954 - AluSq SINE Alu -5 308 104 1038 88 7 0 chr3 20538624 20538761 -206985817 + AluSc SINE Alu 31 168 -141 689 197 8 0 chr3 20538861 20538978 -206985600 - FLAM_C SINE Alu -15 118 1 494 159 45 89 chr3 20538978 20539089 -206985489 - HsTC2 DNA Tc2 -17 1881 1777 1985 95 3 46 chr3 20539089 20539394 -206985184 - AluSg1 SINE Alu -17 292 1 494 159 45 89 chr3 20539394 20539439 -206985139 - HsTC2 DNA Tc2 -121 1777 1732 700 216 5 79 chr3 20539445 20539546 -206985032 - HsTC2 DNA Tc2 -1722 176 94 862 138 0 36 chr3 20539546 20539684 -206984894 + FLAM_A SINE Alu 1 133 0 700 216 5 79 chr3 20539684 20539772 -206984806 - HsTC2 DNA Tc2 -1804 94 1 260 383 20 34 chr3 20541621 20541770 -206982808 - MIR SINE MIR -80 182 36 2297 94 0 0 chr3 20543232 20543540 -206981038 + AluY SINE Alu 1 308 -3 1074 69 0 0 chr3 20543718 20543849 -206980729 + AluSq/x SINE Alu 1 131 -181 2368 69 10 7 chr3 20544503 20544808 -206979770 - AluSp SINE Alu -7 306 1 2190 97 3 3 chr3 20545023 20545331 -206979247 - AluSq SINE Alu -5 308 1 227 189 0 19 chr3 20545720 20545773 -206978805 + CT-rich Low_complexity Low_complexity 1 52 0 225 0 0 91 chr3 20546882 20546926 -206977652 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 23 54 0 0 chr3 20547031 20547068 -206977510 + GC_rich Low_complexity Low_complexity 1 37 0 41 96 0 0 chr3 20547221 20547346 -206977232 + GC_rich Low_complexity Low_complexity 1 125 0 251 128 39 13 chr3 20547392 20547470 -206977108 + (CCG)n Simple_repeat Simple_repeat 3 82 0 27 0 0 0 chr3 20547487 20547514 -206977064 + GC_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 20549329 20549358 -206975220 + AT_rich Low_complexity Low_complexity 1 29 0 2042 89 24 3 chr3 20549417 20549708 -206974870 - AluSx SINE Alu -15 297 1 1950 167 82 22 chr3 20550334 20550736 -206973842 + MSTB LTR MaLR 1 426 0 357 312 121 17 chr3 20550753 20550926 -206973652 - MIR SINE MIR -54 208 18 2113 94 7 3 chr3 20551431 20551728 -206972850 - AluSp SINE Alu -15 298 1 327 340 69 32 chr3 20552915 20553162 -206971416 + L2 LINE L2 3053 3308 -5 347 150 0 0 chr3 20553226 20553286 -206971292 + MER5A DNA MER1_type 1 60 -129 919 213 0 0 chr3 20553286 20553460 -206971118 + AluJo SINE Alu 121 294 -18 735 463 134 4 chr3 20553465 20553718 -206970860 - AluSg SINE Alu -14 286 1 196 321 21 79 chr3 20557206 20557346 -206967232 + L2 LINE L2 3179 3310 -3 230 370 9 37 chr3 20557682 20557790 -206966788 - MIR3 SINE MIR -27 181 77 21 0 0 0 chr3 20559973 20559994 -206964584 + AT_rich Low_complexity Low_complexity 1 21 0 1838 135 14 7 chr3 20560104 20560400 -206964178 - AluSx SINE Alu -3 309 12 1413 219 24 21 chr3 20560771 20561105 -206963473 - MER58B DNA MER1_type -6 335 1 1164 174 5 23 chr3 20561164 20561382 -206963196 - AluJo SINE Alu -15 297 84 1903 140 3 26 chr3 20561386 20561693 -206962885 - AluSx SINE Alu -12 300 1 1832 108 79 0 chr3 20561759 20562038 -206962540 - AluSx SINE Alu -11 301 1 2076 116 17 0 chr3 20562449 20562742 -206961836 + AluSq SINE Alu 1 298 -15 844 230 104 11 chr3 20563497 20563784 -206960794 - L1MD2 LINE L1 -364 5995 5682 2139 82 10 7 chr3 20563815 20564134 -206960444 + AluSq SINE Alu 4 323 0 377 230 168 80 chr3 20564389 20564663 -206959915 + L1MC5 LINE L1 7299 7596 -365 2471 40 0 3 chr3 20564737 20565033 -206959545 + AluY SINE Alu 1 295 -16 341 216 31 21 chr3 20565116 20565213 -206959365 + L1MC5 LINE L1 7832 7929 -32 533 341 75 43 chr3 20565927 20566364 -206958214 - L3 LINE CR1 -65 1512 1062 761 201 197 18 chr3 20566819 20567093 -206957485 + MER33 DNA MER1_type 1 323 -1 254 297 0 14 chr3 20568486 20568560 -206956018 - L3 LINE CR1 -547 1030 958 1914 84 113 0 chr3 20568901 20569175 -206955403 - AluSx SINE Alu -7 305 1 1379 278 85 34 chr3 20570110 20570877 -206953701 + L2 LINE L2 2512 3313 0 2115 96 0 0 chr3 20571197 20571506 -206953072 - AluSq SINE Alu 0 309 1 2220 98 0 0 chr3 20571973 20572268 -206952310 - AluSq SINE Alu -18 295 1 226 262 48 36 chr3 20572879 20572963 -206951615 + MIR SINE MIR 159 243 -19 251 303 56 45 chr3 20573040 20573129 -206951449 - MIR SINE MIR -11 251 162 294 322 63 58 chr3 20573286 20573460 -206951118 + MLT1F LTR MaLR 12 186 -356 1474 175 3 38 chr3 20573782 20574096 -206950482 + AluJo SINE Alu 1 303 -9 186 237 0 68 chr3 20574868 20574927 -206949651 - L2 LINE L2 -75 3238 3184 206 207 37 98 chr3 20575385 20575467 -206949111 + L3 LINE CR1 1403 1479 -98 2027 123 3 3 chr3 20575703 20576004 -206948574 + AluSx SINE Alu 1 301 -11 3496 158 14 23 chr3 20576392 20576542 -206948036 + L1PA16 LINE L1 5522 5672 -494 2428 91 0 0 chr3 20576542 20576850 -206947728 + AluSc SINE Alu 1 308 -1 3496 158 14 23 chr3 20576850 20577350 -206947228 + L1PA16 LINE L1 5672 6166 0 198 0 0 0 chr3 20578657 20578679 -206945899 + (T)n Simple_repeat Simple_repeat 1 22 0 496 167 0 59 chr3 20578716 20578818 -206945760 - FLAM_A SINE Alu -41 101 6 2049 136 3 7 chr3 20579529 20579837 -206944741 + AluSx SINE Alu 1 307 -5 511 237 116 58 chr3 20579849 20580245 -206944333 + HAL1 LINE L1 1368 1786 -721 1231 158 133 65 chr3 20580289 20580567 -206944011 + AluSx SINE Alu 1 297 -15 301 252 48 10 chr3 20580574 20580677 -206943901 + L1MC5 LINE L1 7808 7914 -47 775 151 8 0 chr3 20580701 20580820 -206943758 + AluSq/x SINE Alu 1 120 -192 22 35 0 0 chr3 20580824 20580853 -206943725 + AT_rich Low_complexity Low_complexity 1 29 0 1947 133 3 24 chr3 20583145 20583439 -206941139 + AluSq SINE Alu 1 288 -25 441 0 0 0 chr3 20583467 20583516 -206941062 + (TG)n Simple_repeat Simple_repeat 2 50 0 517 204 0 106 chr3 20583740 20583872 -206940706 - FLAM_A SINE Alu -15 118 1 1839 107 0 0 chr3 20584108 20584341 -206940237 + AluSx SINE Alu 1 233 -79 916 198 24 6 chr3 20584660 20584827 -206939751 + AluJb SINE Alu 121 290 -22 2035 138 0 14 chr3 20584835 20585132 -206939446 + AluSx SINE Alu 1 293 -19 232 204 197 21 chr3 20585185 20585327 -206939251 + Tigger8 DNA MER2_type 326 492 -174 2204 90 0 0 chr3 20585363 20585640 -206938938 + AluSg SINE Alu 13 289 -21 225 336 32 40 chr3 20585812 20585937 -206938641 - MIR3 SINE MIR -41 167 44 2111 224 96 48 chr3 20585945 20586053 -206938525 + L1MB5 LINE L1 2211 2312 -3834 1821 143 3 21 chr3 20586053 20586363 -206938215 + AluJb SINE Alu 1 305 0 2111 224 96 48 chr3 20586363 20586936 -206937642 + L1MB5 LINE L1 2312 2964 -3182 2024 99 3 51 chr3 20586936 20587248 -206937330 + AluSq SINE Alu 1 297 -16 2111 224 96 48 chr3 20587248 20587616 -206936962 + L1MB5 LINE L1 2964 3313 -2833 277 83 62 0 chr3 20587644 20587692 -206936886 - L1MB7 LINE L1 -3 6181 6131 1605 215 39 2 chr3 20587693 20588134 -206936444 - L1MB7 LINE L1 -16 6168 5712 1042 208 43 111 chr3 20588131 20588258 -206936320 + L1MB5 LINE L1 3359 3493 -2653 * 2171 128 0 0 chr3 20588258 20588556 -206936022 + AluSg SINE Alu 1 298 -12 1042 208 43 111 chr3 20588556 20588913 -206935665 + L1MB5 LINE L1 3493 3810 -2336 893 192 47 10 chr3 20588981 20589174 -206935404 + L1MC1 LINE L1 6134 6333 0 2979 204 49 39 chr3 20589188 20589584 -206934994 + L1MB5 LINE L1 5324 5715 -459 2588 62 0 0 chr3 20589584 20589889 -206934689 + AluY SINE Alu 1 305 -6 2979 204 49 39 chr3 20589889 20590335 -206934243 + L1MB5 LINE L1 5715 6174 0 1322 89 0 12 chr3 20591415 20591584 -206932994 - AluSg/x SINE Alu -15 295 129 2068 115 30 13 chr3 20592353 20592658 -206931920 + AluSx SINE Alu 3 312 0 510 246 0 12 chr3 20592658 20592829 -206931749 + GA-rich Low_complexity Low_complexity 2 170 0 1277 167 0 14 chr3 20593157 20593372 -206931206 + AluJb SINE Alu 85 296 -16 889 246 79 30 chr3 20594337 20594642 -206929936 + Charlie1a DNA MER1_type 16 335 -1120 1796 152 37 3 chr3 20594784 20595080 -206929498 + AluJb SINE Alu 1 306 -6 1970 129 41 0 chr3 20595376 20595670 -206928908 + AluSx SINE Alu 1 306 -6 2342 59 31 3 chr3 20596688 20596978 -206927600 - AluY SINE Alu -13 298 1 1206 137 0 32 chr3 20597246 20597460 -206927118 - AluSg/x SINE Alu 0 303 96 1435 181 24 27 chr3 20597575 20597868 -206926710 + AluSx SINE Alu 1 292 -20 520 184 10 10 chr3 20597882 20597985 -206926593 + AluSq/x SINE Alu 4 106 -206 873 159 0 0 chr3 20598087 20598219 -206926359 - AluJb SINE Alu -180 132 1 851 216 43 4 chr3 20598278 20598533 -206926045 + L1M4 LINE L1 4904 5168 -978 1602 173 18 11 chr3 20598559 20598837 -206925741 + AluJo SINE Alu 1 280 -32 2094 131 3 0 chr3 20598838 20599128 -206925450 - AluSx SINE Alu -19 293 3 321 135 0 0 chr3 20599143 20599195 -206925383 + (A)n Simple_repeat Simple_repeat 1 52 0 609 319 101 14 chr3 20599434 20599782 -206924796 + MLT1H1 LTR MaLR 142 519 -36 277 293 0 10 chr3 20599796 20599895 -206924683 + MLT1H1-int LTR MaLR 4 101 -1270 1628 184 10 7 chr3 20600418 20600706 -206923872 - AluJo SINE Alu -23 289 1 240 223 29 58 chr3 20600755 20600858 -206923720 - L1M4 LINE L1 -4898 1644 1545 1750 114 42 19 chr3 20601266 20601529 -206923049 - AluSx SINE Alu -20 292 24 943 257 120 46 chr3 20602114 20602603 -206921975 + MLT1H1 LTR MaLR 50 555 0 1658 120 65 105 chr3 20602771 20603122 -206921456 - MER1B DNA MER1_type 0 337 1 1553 197 0 7 chr3 20603466 20603745 -206920833 + AluJo SINE Alu 2 278 -34 323 211 11 0 chr3 20603761 20603851 -206920727 + GA-rich Low_complexity Low_complexity 2 92 0 839 163 0 0 chr3 20604995 20605124 -206919454 - FLAM_C SINE Alu -4 129 1 742 184 0 0 chr3 20605216 20605341 -206919237 + AluJb SINE Alu 1 125 -187 628 278 72 12 chr3 20605881 20606212 -206918366 - L1MEc LINE L1 -4579 1682 1332 331 200 0 0 chr3 20606349 20606414 -206918164 - AluJ/FLAM SINE Alu -211 91 27 319 321 42 37 chr3 20606427 20606574 -206918004 - L1MEc LINE L1 -4885 1185 1035 827 147 0 37 chr3 20606574 20606710 -206917868 - FLAM_C SINE Alu -2 131 1 319 321 42 37 chr3 20606710 20606752 -206917826 - L1MEc LINE L1 -5035 1035 995 304 270 101 11 chr3 20606779 20606957 -206917621 - L1MEc LINE L1 -5069 1001 808 2158 105 7 3 chr3 20607341 20607635 -206916943 + AluSg SINE Alu 1 295 -15 2066 116 0 14 chr3 20608784 20609076 -206915502 - AluSx SINE Alu -24 288 1 21 0 0 0 chr3 20609077 20609098 -206915480 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 29 chr3 20609211 20609222 -206915356 + AT_rich Low_complexity Low_complexity 1 11 -22 1881 155 48 0 chr3 20609222 20609513 -206915065 - AluSx SINE Alu -7 305 1 23 0 0 29 chr3 20609513 20609535 -206915043 + AT_rich Low_complexity Low_complexity 11 33 0 663 184 8 8 chr3 20609546 20609671 -206914907 + AluJb SINE Alu 2 126 -186 196 161 32 16 chr3 20609677 20609739 -206914839 + A-rich Low_complexity Low_complexity 4 66 0 574 285 45 32 chr3 20610327 20610548 -206914030 - MIR SINE MIR -26 236 13 381 182 26 0 chr3 20610828 20610905 -206913673 + AluS SINE Alu 221 299 -3 2311 122 0 0 chr3 20611255 20611567 -206913011 + AluSx SINE Alu 1 312 0 929 176 0 108 chr3 20611683 20611933 -206912645 + AluJb SINE Alu 90 312 0 2590 49 0 7 chr3 20612217 20612524 -206912054 - AluYa5 SINE Alu -6 305 1 23 0 0 0 chr3 20613707 20613730 -206910848 + AT_rich Low_complexity Low_complexity 1 23 0 1121 187 123 30 chr3 20613747 20613772 -206910806 - AluJo SINE Alu -9 293 272 1760 73 0 0 chr3 20613772 20613990 -206910588 + AluY SINE Alu 84 301 -10 1121 187 123 30 chr3 20613990 20614232 -206910346 - AluJo SINE Alu -30 272 1 2353 80 0 13 chr3 20614708 20615021 -206909557 - AluY SINE Alu -2 309 1 1251 152 0 0 chr3 20615156 20615334 -206909244 + AluSg/x SINE Alu 117 294 -16 522 199 0 43 chr3 20615689 20615797 -206908781 - Charlie1 DNA MER1_type -5 2756 2654 1814 192 49 0 chr3 20615797 20616146 -206908432 - MER47A DNA MER2_type 0 366 1 522 199 0 43 chr3 20616146 20616178 -206908400 - Charlie1 DNA MER1_type -107 2654 2622 * 575 219 33 13 chr3 20616176 20616327 -206908251 - Charlie1 DNA MER1_type -2541 220 67 214 243 117 39 chr3 20616700 20616803 -206907775 - L3 LINE CR1 -322 1255 1145 943 108 0 0 chr3 20617166 20617295 -206907283 - FLAM_C SINE Alu -4 129 1 253 222 16 0 chr3 20617323 20617386 -206907192 + FLAM_A SINE Alu 69 132 -1 504 213 0 41 chr3 20617772 20617894 -206906684 - FRAM SINE Alu -16 160 44 1074 176 38 86 chr3 20618020 20618287 -206906291 - AluJb SINE Alu -15 297 44 2103 133 0 0 chr3 20618525 20618826 -206905752 + AluSx SINE Alu 1 301 -11 1548 185 3 55 chr3 20618827 20619135 -206905443 - AluJo SINE Alu -20 292 1 1373 211 39 3 chr3 20619139 20619424 -206905154 - AluJo SINE Alu -6 296 2 395 251 66 33 chr3 20619791 20620034 -206904544 - L1ME3A LINE L1 -270 5900 5650 183 188 0 0 chr3 20620037 20620069 -206904509 + MER5C DNA MER1_type 1 32 -292 1433 194 86 0 chr3 20620267 20620422 -206904156 - AluJb SINE Alu -10 302 162 185 0 40 0 chr3 20620422 20620447 -206904131 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1433 194 86 0 chr3 20620447 20620569 -206904009 - AluJb SINE Alu -150 162 1 240 59 0 0 chr3 20620710 20620744 -206903834 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2072 115 0 0 chr3 20620745 20621024 -206903554 - AluSx SINE Alu -32 280 2 441 254 193 33 chr3 20621031 20621244 -206903334 - L1ME3A LINE L1 -751 5395 5149 1462 189 8 11 chr3 20621263 20621528 -206903050 + AluJo SINE Alu 5 268 -44 599 355 81 24 chr3 20621632 20621820 -206902758 - L1ME3A LINE L1 -1768 4378 4202 1831 175 7 0 chr3 20621820 20622128 -206902450 - AluJb SINE Alu -2 310 1 599 355 81 24 chr3 20622128 20622395 -206902183 - L1ME3A LINE L1 -1944 4202 3897 489 271 64 61 chr3 20622563 20623124 -206901454 - L1ME3A LINE L1 -2467 3679 3117 251 281 22 22 chr3 20623277 20623416 -206901162 - L1ME3A LINE L1 -3330 2816 2678 396 0 0 0 chr3 20623573 20623617 -206900961 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 2002 127 0 7 chr3 20623617 20623901 -206900677 - AluSg SINE Alu -28 282 1 21 36 0 0 chr3 20624135 20624163 -206900415 + AT_rich Low_complexity Low_complexity 1 28 0 689 250 122 44 chr3 20624177 20624497 -206900081 - L1ME3A LINE L1 -26 6144 5800 2418 81 7 3 chr3 20624941 20625248 -206899330 + AluY SINE Alu 1 308 -3 366 228 96 32 chr3 20625295 20625545 -206899033 + L1 LINE L1 3745 4010 -2136 390 258 159 34 chr3 20625670 20625903 -206898675 + L1M4 LINE L1 4224 4485 -1661 858 288 66 22 chr3 20625912 20626367 -206898211 + L1M4 LINE L1 4635 5109 -1037 262 181 12 72 chr3 20626732 20626898 -206897680 + (TATATG)n Simple_repeat Simple_repeat 5 160 0 2114 141 0 19 chr3 20627727 20628040 -206896538 - AluSx SINE Alu -5 307 1 2007 125 3 16 chr3 20628748 20629052 -206895526 + AluSx SINE Alu 1 300 -12 995 156 82 130 chr3 20629690 20629829 -206894749 + AluJo SINE Alu 1 145 -167 1536 168 31 31 chr3 20629829 20630115 -206894463 - AluJo SINE Alu -26 286 1 1874 131 0 55 chr3 20630122 20630450 -206894128 - AluSx SINE Alu -2 310 1 995 156 82 130 chr3 20630450 20630572 -206894006 + AluJo SINE Alu 151 257 -55 21 36 0 0 chr3 20630600 20630628 -206893950 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 20630716 20630741 -206893837 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 7 chr3 20631015 20631314 -206893264 - AluY SINE Alu -14 297 1 372 115 16 0 chr3 20631333 20631394 -206893184 - MER50 LTR ERV1 -174 560 499 1816 172 0 0 chr3 20631850 20632141 -206892437 + AluJo SINE Alu 1 291 -21 2397 80 0 10 chr3 20632258 20632559 -206892019 + AluSc SINE Alu 2 299 -10 21 36 0 0 chr3 20632959 20632987 -206891591 + AT_rich Low_complexity Low_complexity 1 28 0 234 238 109 0 chr3 20633049 20633150 -206891428 - MIR SINE MIR -12 250 139 1504 129 0 0 chr3 20633385 20633587 -206890991 - AluSx SINE Alu -110 202 1 1869 174 0 3 chr3 20634244 20634548 -206890030 + AluSx SINE Alu 1 303 -9 372 207 180 9 chr3 20634566 20634677 -206889901 + L1 LINE L1 4195 4324 -1822 1579 191 0 30 chr3 20634807 20635111 -206889467 + AluJo SINE Alu 1 295 -17 1761 117 0 119 chr3 20635290 20635656 -206888922 - AluJo SINE Alu 0 325 1 888 161 0 0 chr3 20636018 20636155 -206888423 - AluJo SINE Alu -175 137 1 1966 165 0 0 chr3 20636194 20636491 -206888087 + AluSx SINE Alu 1 297 -15 2267 105 0 0 chr3 20636619 20636930 -206887648 + AluSx SINE Alu 1 311 0 2253 100 0 3 chr3 20637250 20637539 -206887039 + AluSx SINE Alu 1 288 -24 205 290 0 0 chr3 20638281 20638350 -206886228 - L3 LINE CR1 -890 687 619 2375 86 3 0 chr3 20639166 20639501 -206885077 + AluSp SINE Alu 1 336 0 359 314 33 33 chr3 20639747 20639957 -206884621 - MIR SINE MIR -32 230 21 2192 83 14 0 chr3 20640256 20640585 -206883993 + AluY SINE Alu 1 333 0 1178 182 147 23 chr3 20640646 20640904 -206883674 - AluJb SINE Alu -8 294 5 1999 142 3 0 chr3 20641297 20641586 -206882992 + AluSx SINE Alu 1 290 -22 1255 181 0 5 chr3 20641810 20642033 -206882545 + AluSg/x SINE Alu 85 306 0 1407 312 129 21 chr3 20642073 20643015 -206881563 + L2 LINE L2 1847 2890 -424 2208 108 10 10 chr3 20643349 20643655 -206880923 + AluSx SINE Alu 1 306 -6 435 241 152 0 chr3 20644050 20644162 -206880416 + FLAM_A SINE Alu 1 129 -4 729 222 59 82 chr3 20644447 20644778 -206879800 + L1MC5 LINE L1 7306 7628 -333 2184 122 0 10 chr3 20644778 20645082 -206879496 - AluJb SINE Alu -11 301 1 729 222 59 82 chr3 20645082 20645138 -206879440 + L1MC5 LINE L1 7628 7684 -277 822 167 118 48 chr3 20645149 20645377 -206879201 + AluJo SINE Alu 63 306 -6 2003 122 40 0 chr3 20645377 20645655 -206878923 + AluSx SINE Alu 1 289 -23 238 254 64 9 chr3 20645673 20645783 -206878795 + L1MC5 LINE L1 7709 7824 -137 * 794 139 63 57 chr3 20645774 20645932 -206878646 + L1PB1 LINE L1 5993 6151 0 37 0 0 0 chr3 20646104 20646141 -206878437 + AT_rich Low_complexity Low_complexity 1 37 0 2227 76 14 7 chr3 20646141 20646429 -206878149 - AluY SINE Alu -21 290 1 2179 128 7 3 chr3 20646434 20646739 -206877839 - AluSq SINE Alu -7 306 1 1859 167 0 31 chr3 20646739 20647055 -206877523 - AluSx SINE Alu -5 307 1 2240 110 0 7 chr3 20647247 20647548 -206877030 - AluSq SINE Alu -13 300 2 2050 260 99 12 chr3 20647568 20648207 -206876371 - MER44D DNA MER2_type -1 604 39 21 36 0 0 chr3 20648209 20648237 -206876341 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 20648360 20648382 -206876196 + AT_rich Low_complexity Low_complexity 1 22 0 2077 114 4 4 chr3 20648384 20648665 -206875913 + AluSg1 SINE Alu 1 281 -28 188 33 0 33 chr3 20648673 20648703 -206875875 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1574 191 30 20 chr3 20649510 20649813 -206874765 + AluJb SINE Alu 1 306 -6 805 238 0 6 chr3 20650402 20650574 -206874004 - AluJo SINE Alu -140 172 2 464 291 0 28 chr3 20650576 20650717 -206873861 - FRAM SINE Alu -22 154 18 2449 86 0 0 chr3 20650784 20651087 -206873491 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr3 20651369 20651390 -206873188 + AT_rich Low_complexity Low_complexity 1 21 0 207 307 44 44 chr3 20651511 20651625 -206872953 + L3 LINE CR1 985 1098 -479 1388 170 4 13 chr3 20651735 20651965 -206872613 + AluJo SINE Alu 2 229 -83 511 276 0 0 chr3 20652881 20652997 -206871581 + FLAM_A SINE Alu 1 116 -17 186 43 0 0 chr3 20653001 20653024 -206871554 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2225 124 0 0 chr3 20654138 20654437 -206870141 + AluSq SINE Alu 1 299 -14 2103 119 3 0 chr3 20654525 20654811 -206869767 + AluSx SINE Alu 2 288 -24 1834 80 13 0 chr3 20655547 20655773 -206868805 + AluSg SINE Alu 1 229 -81 856 212 10 56 chr3 20655773 20655971 -206868607 + AluJo SINE Alu 90 278 -34 1902 175 0 0 chr3 20656472 20656769 -206867809 - AluJb SINE Alu -15 297 1 2122 139 3 0 chr3 20657125 20657427 -206867151 + AluSx SINE Alu 1 303 -9 585 252 8 0 chr3 20657868 20657991 -206866587 + MLT1A1 LTR MaLR 19 142 -223 652 229 0 14 chr3 20657991 20658131 -206866447 + FRAM SINE Alu 1 136 -40 1950 121 20 7 chr3 20658293 20658591 -206865987 + AluSx SINE Alu 3 304 -8 1960 151 0 7 chr3 20658594 20658885 -206865693 + AluSx SINE Alu 5 293 -19 2116 112 0 11 chr3 20658896 20659219 -206865359 + AluSx SINE Alu 1 320 0 327 250 0 23 chr3 20659219 20659307 -206865271 + L1M4 LINE L1 2648 2733 -3413 346 203 145 100 chr3 20659832 20660073 -206864505 + L1MC4 LINE L1 7779 8030 -12 2301 104 0 3 chr3 20660096 20660404 -206864174 + AluSx SINE Alu 1 307 -5 652 159 0 48 chr3 20660446 20660572 -206864006 + FLAM_C SINE Alu 24 143 0 2092 121 0 7 chr3 20660640 20660945 -206863633 + AluSg SINE Alu 1 303 0 946 206 20 53 chr3 20661343 20661590 -206862988 + AluJb SINE Alu 1 239 -73 1882 134 65 0 chr3 20661907 20662198 -206862380 + AluSg SINE Alu 1 310 0 2296 77 16 19 chr3 20662275 20662586 -206861992 + AluSq SINE Alu 1 310 -3 213 196 10 108 chr3 20662995 20663053 -206861525 - MIR SINE MIR -50 212 167 2421 75 0 0 chr3 20663053 20663346 -206861232 - AluSc SINE Alu -16 293 1 213 196 10 108 chr3 20663346 20663389 -206861189 - MIR SINE MIR -95 167 121 281 236 34 0 chr3 20663397 20663486 -206861092 + L1MEd LINE L1 13 104 -6015 849 179 49 19 chr3 20663739 20663754 -206860824 + AluSg/x SINE Alu 121 134 -178 2022 156 0 0 chr3 20663754 20664055 -206860523 + AluSx SINE Alu 1 301 -11 849 179 49 19 chr3 20664055 20664201 -206860377 + AluSg/x SINE Alu 134 287 -25 2104 105 17 0 chr3 20664214 20664510 -206860068 + AluY SINE Alu 1 301 -10 1247 255 63 59 chr3 20664550 20664570 -206860008 + L1ME LINE L1 5009 5027 -1135 2051 117 0 29 chr3 20664570 20664704 -206859874 + AluSg SINE Alu 1 137 -173 2256 113 3 0 chr3 20664704 20665013 -206859565 + AluSg SINE Alu 1 310 0 2051 117 0 29 chr3 20665013 20665186 -206859392 + AluSg SINE Alu 137 299 -11 1247 255 63 59 chr3 20665186 20665245 -206859333 + L1ME LINE L1 5027 5084 -1078 2500 76 3 0 chr3 20665245 20665549 -206859029 + AluSp SINE Alu 1 305 -8 1247 255 63 59 chr3 20665549 20665618 -206858960 + L1ME LINE L1 5084 5151 -1011 660 284 98 0 chr3 20665618 20665822 -206858756 + MER58A DNA MER1_type 1 224 0 1247 255 63 59 chr3 20665822 20665962 -206858616 + L1ME LINE L1 5151 5289 -873 1736 173 10 10 chr3 20665962 20666263 -206858315 + AluJo SINE Alu 1 301 -11 1247 255 63 59 chr3 20666263 20666488 -206858090 + L1ME LINE L1 5289 5511 -651 2260 101 0 25 chr3 20666488 20666805 -206857773 + AluY SINE Alu 1 309 -2 1247 255 63 59 chr3 20666805 20667098 -206857480 + L1ME LINE L1 5511 5812 -350 1268 208 0 4 chr3 20667136 20667377 -206857201 - AluJo SINE Alu -35 277 38 470 229 25 34 chr3 20667418 20667536 -206857042 + AluJb SINE Alu 179 295 -17 469 184 68 150 chr3 20667537 20667684 -206856894 + MER58B DNA MER1_type 177 311 -30 29 0 0 0 chr3 20667703 20667732 -206856846 + AT_rich Low_complexity Low_complexity 1 29 0 1430 122 83 0 chr3 20667745 20667975 -206856603 + AluSp SINE Alu 1 249 -64 225 0 0 0 chr3 20668117 20668142 -206856436 + (A)n Simple_repeat Simple_repeat 1 25 0 694 247 12 6 chr3 20668164 20668330 -206856248 + FAM SINE Alu 2 168 -7 1855 121 89 11 chr3 20668330 20668610 -206855968 + AluSq SINE Alu 1 302 -11 597 145 237 93 chr3 20668630 20668703 -206855875 + L1MB2 LINE L1 5727 5788 -393 2193 106 0 7 chr3 20668703 20668995 -206855583 - AluSg SINE Alu -20 290 1 2050 131 0 10 chr3 20668997 20669294 -206855284 - AluSx SINE Alu -18 294 1 597 145 237 93 chr3 20669294 20669451 -206855127 + L1MB2 LINE L1 5788 5990 -191 * 626 222 118 0 chr3 20669446 20669590 -206854988 - L1MB3 LINE L1 -229 5954 5794 585 227 16 15 chr3 20669592 20669748 -206854830 + L1MB2 LINE L1 6005 6162 -6 1100 89 0 20 chr3 20670295 20670441 -206854137 + AluSq/x SINE Alu 1 143 -170 2112 108 4 4 chr3 20670445 20670723 -206853855 + AluSg SINE Alu 3 280 -30 2497 55 3 7 chr3 20671544 20671852 -206852726 - AluY SINE Alu -4 307 1 1624 114 0 0 chr3 20671954 20672173 -206852405 - AluSc SINE Alu -2 307 89 2357 66 0 7 chr3 20672186 20672489 -206852089 - AluY SINE Alu 0 311 11 763 100 0 0 chr3 20672489 20672589 -206851989 - AluSg/x SINE Alu -79 233 134 2260 109 3 0 chr3 20672589 20672893 -206851685 - AluSp SINE Alu -7 306 2 2222 109 0 7 chr3 20673048 20673351 -206851227 - AluSg SINE Alu -9 301 1 618 159 0 37 chr3 20673357 20673502 -206851076 - AluSg/x SINE Alu 0 312 191 590 238 63 0 chr3 20673545 20673688 -206850890 + AluSg/x SINE Alu 78 229 -83 2177 111 7 0 chr3 20673691 20673980 -206850598 - AluSx SINE Alu -21 291 1 1597 164 0 103 chr3 20673983 20674152 -206850426 - AluJb SINE Alu -12 300 115 2558 54 0 0 chr3 20674152 20674446 -206850132 - AluY SINE Alu -17 294 1 1597 164 0 103 chr3 20674446 20674467 -206850111 - AluJb SINE Alu -197 115 93 2461 90 0 0 chr3 20674467 20674779 -206849799 - AluSx SINE Alu 0 312 1 1597 164 0 103 chr3 20674779 20674917 -206849661 - AluJb SINE Alu -219 93 5 649 200 0 0 chr3 20674922 20675037 -206849541 + MER58A DNA MER1_type 42 156 0 2461 92 0 0 chr3 20675086 20675389 -206849189 - AluSc SINE Alu -6 303 1 2269 117 3 3 chr3 20675389 20675698 -206848880 - AluSq SINE Alu -4 309 1 297 221 0 0 chr3 20675703 20675771 -206848807 + Charlie2 DNA MER1_type 1817 1884 -978 1855 157 27 0 chr3 20675793 20676093 -206848485 - AluSx SINE Alu -4 308 1 411 190 13 0 chr3 20676104 20676183 -206848395 - FLAM_A SINE Alu -22 120 41 647 243 169 23 chr3 20676210 20676511 -206848067 - L1ME2 LINE L1 -10 6154 5810 358 167 0 0 chr3 20676525 20676585 -206847993 - L1ME2 LINE L1 -833 5313 5254 877 157 13 7 chr3 20676585 20676738 -206847840 - AluSq SINE Alu -16 297 144 2042 111 57 3 chr3 20676972 20677269 -206847309 + AluSq SINE Alu 1 313 0 1433 156 70 30 chr3 20677327 20677531 -206847047 - AluJb SINE Alu 0 330 109 180 0 0 0 chr3 20677531 20677551 -206847027 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1433 156 70 30 chr3 20677551 20677665 -206846913 - AluJb SINE Alu -221 109 1 21 57 0 0 chr3 20677692 20677727 -206846851 + AT_rich Low_complexity Low_complexity 1 35 0 1897 151 20 3 chr3 20677759 20678051 -206846527 + AluJo SINE Alu 1 297 -15 292 226 157 35 chr3 20678063 20678178 -206846400 + MIR SINE MIR 117 245 -17 217 239 65 0 chr3 20678150 20678196 -206846382 + L2 LINE L2 3222 3270 -2 * 658 140 0 18 chr3 20678198 20678312 -206846266 + FRAM SINE Alu 65 176 0 1963 115 15 0 chr3 20679210 20679480 -206845098 - AluSx SINE Alu 0 312 39 304 196 0 76 chr3 20679634 20679726 -206844852 - L2 LINE L2 -1 3312 3228 25 31 0 0 chr3 20680500 20680532 -206844046 + GC_rich Low_complexity Low_complexity 1 32 0 223 295 9 19 chr3 20680767 20680872 -206843706 + (CCG)n Simple_repeat Simple_repeat 2 105 0 208 302 11 44 chr3 20680819 20681001 -206843577 + C-rich Low_complexity Low_complexity 3 178 0 * 228 299 248 6 chr3 20681636 20681793 -206842785 + L2 LINE L2 3119 3313 0 1443 152 47 19 chr3 20681852 20682108 -206842470 + AluJb SINE Alu 33 295 -17 304 116 0 0 chr3 20682232 20682275 -206842303 + MER4E LTR ERV1 652 694 -72 21 0 0 0 chr3 20682277 20682298 -206842280 + AT_rich Low_complexity Low_complexity 1 21 0 2195 100 3 10 chr3 20682320 20682611 -206841967 + AluSg SINE Alu 1 289 -21 1183 210 91 30 chr3 20682612 20683038 -206841540 - L1MC4 LINE L1 0 8042 7501 403 210 161 0 chr3 20683044 20683187 -206841391 - L1MC4 LINE L1 -597 7445 7280 587 192 0 48 chr3 20683187 20683312 -206841266 - AluJb SINE Alu -6 306 188 2609 71 0 0 chr3 20683335 20683643 -206840935 + AluY SINE Alu 1 308 -3 2123 115 7 7 chr3 20683652 20683947 -206840631 + AluSp SINE Alu 1 295 -18 2043 112 3 40 chr3 20683967 20684102 -206840476 + AluSx SINE Alu 1 139 -173 2125 119 0 13 chr3 20684102 20684404 -206840174 + AluSx SINE Alu 1 298 -14 2043 112 3 40 chr3 20684404 20684571 -206840007 + AluSx SINE Alu 139 292 -20 293 243 13 1 chr3 20684654 20684743 -206839835 - L1MC4 LINE L1 -1288 6537 6432 2186 112 10 10 chr3 20684921 20685053 -206839525 + AluSx SINE Alu 1 132 -180 2212 130 0 0 chr3 20685053 20685360 -206839218 + AluSg SINE Alu 1 307 -3 2186 112 10 10 chr3 20685360 20685523 -206839055 + AluSx SINE Alu 131 296 -16 1472 182 54 11 chr3 20685532 20685812 -206838766 + AluJb SINE Alu 1 292 -20 1814 157 3 46 chr3 20685866 20686049 -206838529 - AluJb SINE Alu -2 310 121 225 108 0 0 chr3 20686049 20686086 -206838492 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2188 84 7 11 chr3 20686086 20686366 -206838212 - AluY SINE Alu -32 279 1 1814 157 3 46 chr3 20686366 20686511 -206838067 - AluJb SINE Alu -189 123 1 452 223 36 54 chr3 20686581 20686705 -206837873 - L1M4 LINE L1 -2537 3609 3487 2230 125 3 0 chr3 20686705 20687002 -206837576 - AluSx SINE Alu -14 298 1 452 223 36 54 chr3 20687002 20687043 -206837535 - L1M4 LINE L1 -2659 3487 3447 1128 154 0 0 chr3 20687047 20687216 -206837362 - AluSc SINE Alu -9 300 132 2401 88 0 31 chr3 20687216 20687536 -206837042 - AluSp SINE Alu -3 310 1 1633 185 3 14 chr3 20687548 20687840 -206836738 - AluJo SINE Alu -13 299 11 1229 156 120 58 chr3 20687852 20688014 -206836564 - MER74A LTR ERVL -250 308 121 2453 72 0 10 chr3 20688014 20688320 -206836258 - AluY SINE Alu -8 303 1 1229 156 120 58 chr3 20688320 20688432 -206836146 - MER74A LTR ERVL -437 121 17 994 157 0 6 chr3 20688567 20688726 -206835852 + AluSg/x SINE Alu 145 302 -8 1959 99 3 48 chr3 20688735 20689050 -206835528 + AluSg SINE Alu 1 302 0 2110 119 31 0 chr3 20689074 20689368 -206835210 + AluSx SINE Alu 1 303 -9 2195 114 7 0 chr3 20689368 20689667 -206834911 + AluSx SINE Alu 1 301 -11 571 279 65 4 chr3 20689701 20689930 -206834648 + L1MC5 LINE L1 7637 7879 -82 478 173 36 45 chr3 20689930 20690040 -206834538 - LTR40a LTR ERVL 0 519 411 198 0 0 0 chr3 20690040 20690062 -206834516 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 1227 180 19 0 chr3 20690079 20690290 -206834288 + AluJb SINE Alu 83 297 -15 2144 126 7 0 chr3 20690291 20690592 -206833986 + AluSx SINE Alu 2 304 -8 705 222 0 47 chr3 20690592 20690763 -206833815 + AluJo/FRAM SINE Alu 137 299 -3 2154 113 13 10 chr3 20690811 20691113 -206833465 - AluSx SINE Alu -9 303 1 765 184 63 76 chr3 20691157 20691380 -206833198 + MLT1B LTR MaLR 1 220 -170 1644 175 4 11 chr3 20691392 20691660 -206832918 - AluJb SINE Alu -38 274 9 2282 122 0 0 chr3 20691672 20691983 -206832595 - AluSx SINE Alu -1 311 1 1584 180 6 42 chr3 20691983 20692101 -206832477 - AluJb SINE Alu -9 303 182 2391 100 3 0 chr3 20692101 20692400 -206832178 - AluSg SINE Alu -10 300 1 1584 180 6 42 chr3 20692400 20692592 -206831986 - AluJb SINE Alu -130 182 4 2202 96 11 0 chr3 20692673 20692985 -206831593 - AluSp SINE Alu 0 315 1 1974 161 3 3 chr3 20693005 20693309 -206831269 + AluJb SINE Alu 1 304 -8 2023 142 7 3 chr3 20693710 20694006 -206830572 + AluSx SINE Alu 1 297 -15 2236 90 20 10 chr3 20694617 20694916 -206829662 - AluSq SINE Alu -11 302 1 23 68 0 0 chr3 20696107 20696151 -206828427 + GC_rich Low_complexity Low_complexity 1 44 0 2301 85 0 0 chr3 20696943 20697245 -206827333 + AluSq SINE Alu 1 302 0 420 237 127 29 chr3 20697379 20697552 -206827026 + MIR SINE MIR 7 196 -66 2229 98 0 7 chr3 20698203 20698511 -206826067 - AluSx SINE Alu 0 306 1 1563 150 44 44 chr3 20698670 20698805 -206825773 - AluSx SINE Alu -18 294 160 2324 104 0 3 chr3 20698805 20699112 -206825466 - AluSg SINE Alu -4 306 1 2310 102 0 3 chr3 20699114 20699408 -206825170 - AluSg SINE Alu -10 300 8 1563 150 44 44 chr3 20699408 20699563 -206825015 - AluSx SINE Alu -152 160 1 2296 101 3 10 chr3 20699569 20699875 -206824703 - AluSp SINE Alu -6 307 4 1935 154 3 20 chr3 20699881 20700186 -206824392 - AluJo SINE Alu -12 300 1 2316 111 0 3 chr3 20700238 20700545 -206824033 - AluSx SINE Alu -6 306 1 1637 82 23 14 chr3 20700548 20700767 -206823811 - AluSq SINE Alu -4 309 89 2582 58 0 10 chr3 20700900 20701212 -206823366 - AluY SINE Alu -2 309 1 2101 113 0 17 chr3 20702621 20702922 -206821656 - AluSx SINE Alu -16 296 1 335 346 79 26 chr3 20702954 20703182 -206821396 + L2 LINE L2 3024 3263 -9 1456 128 8 12 chr3 20703195 20703446 -206821132 - MSTA LTR MaLR 0 428 179 2041 118 10 7 chr3 20703450 20703746 -206820832 + AluSx SINE Alu 1 297 -15 211 338 73 59 chr3 20703933 20704137 -206820441 - L2 LINE L2 -35 3237 3031 2189 103 0 3 chr3 20704185 20704492 -206820086 - AluSc SINE Alu 0 306 1 2463 80 0 3 chr3 20704545 20704844 -206819734 - AluSc SINE Alu -11 298 1 543 229 93 0 chr3 20704894 20705034 -206819544 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 20705173 20705484 -206819094 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 20705641 20705774 -206818804 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 20706122 20706164 -206818414 + GC_rich Low_complexity Low_complexity 1 42 0 557 115 0 21 chr3 20707756 20707852 -206816726 + AluSp/q SINE Alu 220 313 0 2326 91 13 10 chr3 20707868 20708176 -206816402 - AluY SINE Alu -2 309 1 2433 76 0 0 chr3 20708229 20708520 -206816058 - AluY SINE Alu -10 301 11 324 48 0 0 chr3 20708564 20708606 -206815972 + (TC)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chr3 20708639 20708660 -206815918 + (TG)n Simple_repeat Simple_repeat 2 22 0 1638 184 0 21 chr3 20708669 20708952 -206815626 - AluJb SINE Alu -35 277 1 36 0 0 0 chr3 20708952 20708988 -206815590 + AT_rich Low_complexity Low_complexity 1 36 0 1740 140 53 4 chr3 20709025 20709289 -206815289 - AluSx SINE Alu -14 298 22 580 195 0 16 chr3 20709299 20709422 -206815156 - FLAM_C SINE Alu -1 142 22 286 245 39 2 chr3 20709442 20709529 -206815049 - L1MB3 LINE L1 -145 6029 5942 400 158 26 16 chr3 20709764 20709871 -206814707 + AluS SINE Alu 1 66 -235 311 143 0 95 chr3 20709986 20710049 -206814529 + AluSq/x SINE Alu 78 133 -169 2244 96 14 0 chr3 20710199 20710492 -206814086 + AluSx SINE Alu 2 298 -14 189 0 0 0 chr3 20711028 20711049 -206813529 + (T)n Simple_repeat Simple_repeat 1 21 0 2116 93 45 45 chr3 20711279 20711591 -206812987 + AluSx SINE Alu 1 312 0 643 193 9 0 chr3 20711609 20711723 -206812855 + FLAM_C SINE Alu 3 117 -26 1808 99 0 0 chr3 20711734 20711956 -206812622 - AluY SINE Alu -89 222 1 183 100 0 0 chr3 20711971 20712001 -206812577 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 802 184 0 0 chr3 20712024 20712160 -206812418 - AluJo SINE Alu -176 136 1 267 79 0 0 chr3 20712850 20712888 -206811690 + (A)n Simple_repeat Simple_repeat 1 38 0 2494 73 0 0 chr3 20713490 20713792 -206810786 - AluSc SINE Alu -7 302 1 22 0 0 0 chr3 20714045 20714067 -206810511 + AT_rich Low_complexity Low_complexity 1 22 0 2364 98 0 3 chr3 20717167 20717462 -206807116 + AluSx SINE Alu 1 294 -18 1969 149 0 34 chr3 20718045 20718083 -206806495 - AluSx SINE Alu 0 312 274 225 0 0 0 chr3 20718083 20718108 -206806470 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1969 149 0 34 chr3 20718108 20718392 -206806186 - AluSx SINE Alu -38 274 1 2235 106 7 10 chr3 20718403 20718705 -206805873 - AluSp SINE Alu -12 301 1 2056 123 7 7 chr3 20718751 20719035 -206805543 - AluSx SINE Alu -28 284 1 866 221 26 40 chr3 20719053 20719279 -206805299 - MER58A DNA MER1_type -1 223 1 1962 133 29 80 chr3 20719448 20719641 -206804937 - THE1B LTR MaLR 0 364 163 2303 127 0 0 chr3 20719641 20719948 -206804630 + AluSg SINE Alu 1 307 -3 2520 90 0 0 chr3 20719948 20720259 -206804319 + AluY SINE Alu 1 311 0 1962 133 29 80 chr3 20720259 20720441 -206804137 - THE1B LTR MaLR -199 165 7 2563 81 0 0 chr3 20720491 20720798 -206803780 - AluSc SINE Alu -2 307 1 543 229 93 0 chr3 20720848 20720988 -206803590 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 20721127 20721438 -206803140 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 20721595 20721728 -206802850 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 20722076 20722118 -206802460 + GC_rich Low_complexity Low_complexity 1 42 0 2356 73 16 35 chr3 20723572 20723888 -206800690 - AluSq SINE Alu -3 310 1 1680 152 0 31 chr3 20724978 20725268 -206799310 - AluJo SINE Alu -3 309 29 2010 159 0 3 chr3 20725313 20725621 -206798957 + AluJo SINE Alu 1 307 -5 1761 64 0 0 chr3 20725626 20725828 -206798750 + AluY SINE Alu 1 202 -109 291 149 0 0 chr3 20725833 20725880 -206798698 + AluY SINE Alu 253 299 -9 252 0 0 0 chr3 20726424 20726452 -206798126 + (TA)n Simple_repeat Simple_repeat 2 29 0 2209 113 3 0 chr3 20726473 20726766 -206797812 - AluSq SINE Alu -5 308 15 1858 120 36 29 chr3 20726959 20727268 -206797310 - AluY SINE Alu 0 311 1 2124 114 3 7 chr3 20727272 20727562 -206797016 - AluJb SINE Alu -23 289 1 1929 173 86 18 chr3 20727748 20728130 -206796448 - MSTB LTR MaLR -18 408 1 881 125 0 22 chr3 20728342 20728478 -206796100 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr3 20728587 20728617 -206795961 + (T)n Simple_repeat Simple_repeat 1 30 0 825 128 8 15 chr3 20728745 20728878 -206795700 - FLAM_C SINE Alu -1 132 1 180 0 0 0 chr3 20729021 20729041 -206795537 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 505 188 119 0 chr3 20729041 20729142 -206795436 - FLAM_A SINE Alu -29 113 1 263 231 0 103 chr3 20729246 20729293 -206795285 + MER20 DNA MER1_type 1 39 -180 2281 128 0 3 chr3 20729293 20729606 -206794972 - AluSx SINE Alu 0 312 1 263 231 0 103 chr3 20729606 20729636 -206794942 + MER20 DNA MER1_type 39 70 -149 * 297 221 0 0 chr3 20729611 20729679 -206794899 + Charlie2 DNA MER1_type 1817 1884 -978 1809 157 30 0 chr3 20729701 20730000 -206794578 - AluSx SINE Alu -4 308 1 411 190 13 0 chr3 20730011 20730090 -206794488 - FLAM_A SINE Alu -22 120 41 647 243 169 23 chr3 20730117 20730418 -206794160 - L1ME2 LINE L1 -10 6154 5810 358 167 0 0 chr3 20730432 20730492 -206794086 - L1ME2 LINE L1 -833 5313 5254 736 184 0 21 chr3 20730492 20730633 -206793945 - AluSg/x SINE Alu -16 296 159 420 98 0 0 chr3 20730633 20730694 -206793884 + Alu SINE Alu 241 301 -1 2130 135 7 3 chr3 20730699 20731003 -206793575 + AluSq SINE Alu 1 305 -8 1390 161 45 15 chr3 20731009 20731276 -206793302 + AluSg1 SINE Alu 1 275 -34 951 114 8 0 chr3 20732141 20732272 -206792306 - AluSq/x SINE Alu -180 133 2 2143 123 3 3 chr3 20732358 20732658 -206791920 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 20733781 20733807 -206790771 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1339 207 17 47 chr3 20733965 20734265 -206790313 + AluJo SINE Alu 1 291 -21 2278 93 17 10 chr3 20734530 20734832 -206789746 - AluSp SINE Alu -9 304 1 1781 250 60 19 chr3 20734966 20735486 -206789092 - MER74B LTR ERVL -27 595 55 2271 84 10 35 chr3 20735592 20735903 -206788675 - AluSg SINE Alu -7 303 1 1185 139 5 39 chr3 20736993 20737201 -206787377 - AluJo SINE Alu -3 309 109 1632 128 0 4 chr3 20737303 20737530 -206787048 - AluSx SINE Alu -85 227 2 2143 123 3 3 chr3 20737616 20737916 -206786662 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 20739039 20739065 -206785513 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1339 207 17 47 chr3 20739223 20739523 -206785055 + AluJo SINE Alu 1 291 -21 2278 93 17 10 chr3 20739788 20740090 -206784488 - AluSp SINE Alu -9 304 1 1781 250 60 19 chr3 20740224 20740744 -206783834 - MER74B LTR ERVL -27 595 55 700 50 0 59 chr3 20740837 20740938 -206783640 - AluSg/x SINE Alu 0 310 216 229 209 0 0 chr3 20740938 20740981 -206783597 + Alu SINE Alu 253 295 -7 3450 178 88 39 chr3 20740991 20741026 -206783552 + L1MB2 LINE L1 5281 5313 -858 2176 109 13 10 chr3 20741026 20741338 -206783240 + AluSq SINE Alu 1 313 0 3450 178 88 39 chr3 20741338 20741963 -206782615 + L1MB2 LINE L1 5313 5906 -265 1250 174 55 0 chr3 20741963 20742181 -206782397 - MER30 DNA MER1_type 0 230 1 3450 178 88 39 chr3 20742181 20742268 -206782310 + L1MB2 LINE L1 5906 5987 -184 1329 166 113 32 chr3 20742268 20742552 -206782026 + AluJb SINE Alu 1 307 -5 3450 178 88 39 chr3 20742552 20742649 -206781929 + L1MB2 LINE L1 5987 6169 -2 707 252 87 14 chr3 20742644 20742862 -206781716 + L1MB7 LINE L1 5814 6047 -137 * 12463 149 52 18 chr3 20743006 20743117 -206781461 - Tigger1 DNA MER2_type 0 2418 2312 2035 126 44 0 chr3 20743117 20743410 -206781168 + AluSx SINE Alu 1 306 -6 1555 186 31 21 chr3 20743420 20743711 -206780867 + AluJo SINE Alu 1 294 -18 12463 149 52 18 chr3 20743711 20743798 -206780780 - Tigger1 DNA MER2_type -114 2304 2221 2178 114 3 3 chr3 20743798 20744097 -206780481 + AluSq SINE Alu 1 299 -14 12463 149 52 18 chr3 20744097 20746039 -206778539 - Tigger1 DNA MER2_type -197 2221 182 2269 98 7 0 chr3 20746039 20746345 -206778233 + AluSg SINE Alu 1 308 -2 12463 149 52 18 chr3 20746345 20746477 -206778101 - Tigger1 DNA MER2_type -2236 182 56 662 177 57 38 chr3 20746510 20746668 -206777910 + AluJo SINE Alu 4 164 -148 802 98 114 8 chr3 20746685 20746808 -206777770 + AluSg SINE Alu 1 136 -174 2139 69 83 4 chr3 20746816 20747093 -206777485 + AluY SINE Alu 1 299 -12 258 244 44 44 chr3 20747112 20747202 -206777376 - L1MC4 LINE L1 -1339 6703 6614 228 231 22 44 chr3 20747133 20747224 -206777354 + L1MC4 LINE L1 6615 6703 -1339 * 2195 89 18 0 chr3 20747986 20748267 -206776311 - AluSc SINE Alu -23 286 1 594 150 9 53 chr3 20748582 20748695 -206775883 + AluJb SINE Alu 2 109 -203 1610 159 64 0 chr3 20748700 20748983 -206775595 + AluSx SINE Alu 1 301 -11 612 157 0 82 chr3 20748985 20749119 -206775459 + FRAM SINE Alu 1 40 0 2386 57 0 7 chr3 20749617 20749899 -206774679 + AluY SINE Alu 12 291 -20 193 29 59 0 chr3 20749902 20749936 -206774642 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 1810 175 3 22 chr3 20750323 20750638 -206773940 + AluJo SINE Alu 1 309 -3 2282 113 0 0 chr3 20750865 20751167 -206773411 - AluY SINE Alu -9 302 1 1126 117 0 0 chr3 20751167 20751312 -206773266 - AluSq/x SINE Alu -167 145 1 2165 84 0 30 chr3 20751858 20752201 -206772377 - AluY SINE Alu 0 334 1 2361 89 3 0 chr3 20752642 20752935 -206771643 + AluSg SINE Alu 1 294 -16 207 259 82 24 chr3 20753472 20753557 -206771021 + MIR SINE MIR 169 258 -4 1440 192 0 42 chr3 20753565 20753872 -206770706 - AluJo SINE Alu -18 294 1 213 224 20 20 chr3 20753915 20753964 -206770614 - MIR SINE MIR -213 49 1 1803 127 35 32 chr3 20754130 20754414 -206770164 - AluSx SINE Alu -27 285 1 2291 112 0 10 chr3 20754420 20754733 -206769845 - AluSg SINE Alu 0 310 1 1113 98 7 0 chr3 20754733 20754876 -206769702 - AluSg SINE Alu -166 144 1 436 62 0 0 chr3 20755049 20755114 -206769464 + Alu SINE Alu 241 305 -5 917 200 101 82 chr3 20755129 20755703 -206768875 + L1MC5 LINE L1 7153 7737 -224 854 189 51 46 chr3 20755706 20755902 -206768676 + Tigger2a DNA MER2_type 4 200 -234 789 179 0 0 chr3 20756002 20756119 -206768459 - FLAM_C SINE Alu -15 118 2 356 54 0 54 chr3 20756469 20756525 -206768053 + Alu SINE Alu 248 300 0 1762 176 14 0 chr3 20756832 20757121 -206767457 - AluJb SINE Alu -19 293 1 2265 107 3 0 chr3 20757770 20758069 -206766509 + AluSx SINE Alu 1 300 -12 1575 92 0 14 chr3 20758418 20758625 -206765953 - AluSq SINE Alu -52 261 58 23 0 0 0 chr3 20758706 20758729 -206765849 + AT_rich Low_complexity Low_complexity 1 23 0 2012 114 47 7 chr3 20759223 20759520 -206765058 + AluSq SINE Alu 1 309 -4 1613 174 8 4 chr3 20759668 20759933 -206764645 + AluSx SINE Alu 1 266 -46 1603 191 14 7 chr3 20760404 20760692 -206763886 + AluJb SINE Alu 1 290 -22 619 211 0 0 chr3 20760737 20760841 -206763737 + FLAM_A SINE Alu 9 112 -30 1443 114 5 5 chr3 20760964 20761166 -206763412 - AluSp SINE Alu -9 304 103 290 392 0 0 chr3 20761332 20761490 -206763088 + G-rich Low_complexity Low_complexity 1 158 0 348 411 0 0 chr3 20761517 20761685 -206762893 + G-rich Low_complexity Low_complexity 1 168 0 24 0 0 0 chr3 20761716 20761740 -206762838 + GC_rich Low_complexity Low_complexity 1 24 0 619 198 0 0 chr3 20761887 20761998 -206762580 - AluJb SINE Alu -200 112 2 650 119 0 10 chr3 20762008 20762109 -206762469 + FLAM_C SINE Alu 32 131 -12 561 175 0 61 chr3 20762210 20762324 -206762254 - AluJb SINE Alu -205 107 1 25 31 0 0 chr3 20762327 20762359 -206762219 + AT_rich Low_complexity Low_complexity 1 32 0 1742 159 17 10 chr3 20762416 20762706 -206761872 - AluJo SINE Alu -20 292 1 1270 221 14 18 chr3 20762742 20763023 -206761555 - AluJo SINE Alu -32 280 1 201 155 17 35 chr3 20763101 20763159 -206761419 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2347 97 3 0 chr3 20763657 20763966 -206760612 + AluSp SINE Alu 1 310 -3 2364 91 0 0 chr3 20764423 20764720 -206759858 - AluSx SINE Alu -15 297 1 300 105 0 0 chr3 20764768 20764806 -206759772 + MER4E LTR ERV1 667 704 -75 1618 163 10 49 chr3 20764971 20765278 -206759300 + AluJb SINE Alu 1 295 -17 1906 86 16 12 chr3 20765590 20765846 -206758732 + AluY SINE Alu 1 257 -54 1342 153 17 34 chr3 20765906 20766142 -206758436 - AluJb SINE Alu -80 232 1 244 343 34 14 chr3 20766152 20766298 -206758280 + L2 LINE L2 2934 3082 -190 2328 78 10 14 chr3 20766559 20766855 -206757723 + AluY SINE Alu 1 295 -16 631 161 0 92 chr3 20766861 20766954 -206757624 + AluJo/FLAM SINE Alu 1 80 -222 1971 147 0 7 chr3 20766954 20767247 -206757331 + AluSx SINE Alu 1 291 -21 631 161 0 92 chr3 20767247 20767283 -206757295 + AluJo/FLAM SINE Alu 80 118 -184 23 0 0 0 chr3 20767285 20767308 -206757270 + AT_rich Low_complexity Low_complexity 1 23 0 2263 93 6 13 chr3 20767511 20767824 -206756754 - AluY SINE Alu 0 311 1 1873 141 28 14 chr3 20768081 20768364 -206756214 + AluSx SINE Alu 1 290 -22 300 91 0 0 chr3 20768364 20768408 -206756170 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1921 122 50 4 chr3 20768415 20768693 -206755885 + AluSx SINE Alu 1 291 -21 1239 226 7 17 chr3 20768728 20769025 -206755553 + AluJo SINE Alu 6 299 -13 1780 135 4 8 chr3 20769741 20770008 -206754570 - AluSq SINE Alu -11 302 37 2146 113 3 13 chr3 20770246 20770547 -206754031 - AluSg SINE Alu -12 298 1 25 0 0 0 chr3 20770619 20770644 -206753934 + AT_rich Low_complexity Low_complexity 1 25 0 341 119 0 49 chr3 20770898 20771021 -206753557 + AluYa5 SINE Alu 92 287 -14 2042 101 30 0 chr3 20771056 20771324 -206753254 - AluY SINE Alu -35 276 1 1329 212 14 14 chr3 20771428 20771721 -206752857 - AluJb SINE Alu -19 293 1 1933 94 16 0 chr3 20771781 20772037 -206752541 - AluY SINE Alu -15 296 37 478 111 12 37 chr3 20772137 20772218 -206752360 + AluSp/q SINE Alu 201 279 -34 288 0 0 0 chr3 20772218 20772250 -206752328 + (CA)n Simple_repeat Simple_repeat 2 33 0 1659 158 57 0 chr3 20772252 20772531 -206752047 + AluSq SINE Alu 1 295 -18 1102 161 0 60 chr3 20772569 20772622 -206751956 - AluJb SINE Alu -125 187 132 2280 85 7 3 chr3 20772622 20772917 -206751661 - AluY SINE Alu -15 296 1 1102 161 0 60 chr3 20772917 20773062 -206751516 - AluJb SINE Alu -180 132 1 446 221 33 72 chr3 20773132 20773257 -206751321 - L1M4 LINE L1 -2537 3609 3492 2193 125 3 0 chr3 20773257 20773554 -206751024 - AluSx SINE Alu -14 298 1 446 221 33 72 chr3 20773554 20773609 -206750969 - L1M4 LINE L1 -2654 3492 3436 279 320 17 33 chr3 20773865 20774046 -206750532 + T-rich Low_complexity Low_complexity 3 180 0 1862 113 0 77 chr3 20774521 20774848 -206749730 + AluSg SINE Alu 1 302 -8 234 61 0 0 chr3 20774855 20774888 -206749690 + L1MA3 LINE L1 6273 6305 0 2284 113 0 0 chr3 20774898 20775198 -206749380 + AluSx SINE Alu 1 300 -12 1755 157 11 7 chr3 20775352 20775638 -206748940 + AluSx SINE Alu 1 287 -25 258 164 0 0 chr3 20775755 20775810 -206748768 + (TA)n Simple_repeat Simple_repeat 1 55 0 2219 115 3 0 chr3 20775810 20776106 -206748472 - AluSp SINE Alu -16 297 1 2245 80 7 3 chr3 20776117 20776403 -206748175 - AluSx SINE Alu -13 299 13 2100 76 8 0 chr3 20776533 20776795 -206747783 + AluSq SINE Alu 1 264 -49 1281 155 30 35 chr3 20776849 20777081 -206747497 - AluJb SINE Alu -80 232 2 346 203 145 100 chr3 20777609 20777850 -206746728 + L1MC4 LINE L1 7779 8030 -12 2129 110 0 3 chr3 20777873 20778165 -206746413 + AluSx SINE Alu 1 291 -21 205 348 19 13 chr3 20778301 20778459 -206746119 + G-rich Low_complexity Low_complexity 4 162 0 628 163 0 0 chr3 20779031 20779129 -206745449 + AluJb SINE Alu 206 303 -9 252 241 231 9 chr3 20779232 20779340 -206745238 + MIR3 SINE MIR 35 166 -42 458 259 133 30 chr3 20779340 20779698 -206744880 - MLT1J2 LTR MaLR 0 450 34 2336 95 0 3 chr3 20779745 20780049 -206744529 - AluSc SINE Alu -6 303 1 322 241 101 70 chr3 20781147 20781170 -206743408 - HAL1 LINE L1 -821 1686 1665 2136 94 0 30 chr3 20781170 20781469 -206743109 - AluSc SINE Alu -19 290 1 322 241 101 70 chr3 20781469 20781644 -206742934 - HAL1 LINE L1 -842 1665 1482 317 217 0 0 chr3 20781686 20781746 -206742832 - FLAM_A SINE Alu -27 106 47 598 259 114 8 chr3 20781864 20782070 -206742508 - L1M4 LINE L1 -1121 5025 4797 198 0 0 0 chr3 20782071 20782093 -206742485 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 237 230 81 14 chr3 20782182 20782256 -206742322 - MER116 DNA Mariner 0 80 2 517 219 37 88 chr3 20782258 20782432 -206742146 - L1M4 LINE L1 -1402 4744 4581 2383 97 0 7 chr3 20782432 20782740 -206741838 + AluSg SINE Alu 1 306 -4 517 219 37 88 chr3 20782740 20782780 -206741798 - L1M4 LINE L1 -1565 4581 4541 494 232 0 0 chr3 20782805 20782900 -206741678 + LTR16A1 LTR ERVL 363 457 0 975 189 6 0 chr3 20783119 20783288 -206741290 + FAM SINE Alu 5 174 -1 1088 92 0 0 chr3 20783896 20784026 -206740552 + AluSq/x SINE Alu 5 134 -179 1515 190 40 13 chr3 20784175 20784475 -206740103 - AluJo SINE Alu -4 308 1 33 25 0 0 chr3 20784636 20784676 -206739902 + AT_rich Low_complexity Low_complexity 1 40 0 1684 168 11 25 chr3 20784736 20785022 -206739556 - AluJo SINE Alu -30 282 1 2299 94 3 26 chr3 20785252 20785561 -206739017 - AluSc SINE Alu -7 302 1 2040 121 6 85 chr3 20785870 20786234 -206738344 + MER1B DNA MER1_type 3 337 0 210 71 0 0 chr3 20786578 20786606 -206737972 + (A)n Simple_repeat Simple_repeat 1 28 0 2174 123 0 13 chr3 20786999 20787301 -206737277 + AluSx SINE Alu 1 298 -14 1367 154 0 5 chr3 20789410 20789618 -206734960 - AluJb SINE Alu -19 293 87 24 0 0 0 chr3 20790354 20790378 -206734200 + AT_rich Low_complexity Low_complexity 1 24 0 281 255 128 0 chr3 20790525 20790619 -206733959 - MIR3 SINE MIR -36 172 67 1642 181 81 16 chr3 20791683 20792174 -206732404 - LTR27 LTR ERV1 0 501 3 1850 109 0 86 chr3 20792510 20792814 -206731764 - AluSx SINE Alu -14 298 21 2966 83 57 5 chr3 20793038 20793460 -206731118 - MLT2A1 LTR ERVL 0 444 1 43888 71 17 8 chr3 20793460 20794678 -206729900 - HERVL-A1-A1 LTR ERVL 0 5654 4449 2321 88 0 14 chr3 20794678 20794998 -206729580 + AluSx SINE Alu 1 312 0 43888 71 17 8 chr3 20794998 20796132 -206728446 - HERVL-A1-A1 LTR ERVL -1205 4449 3327 2202 82 7 0 chr3 20796132 20796401 -206728177 + AluSc SINE Alu 23 293 -16 43888 71 17 8 chr3 20796401 20798705 -206725873 - HERVL-A1-A1 LTR ERVL -2327 3327 931 2346 88 0 3 chr3 20798705 20799001 -206725577 - AluSg SINE Alu -15 295 1 43888 71 17 8 chr3 20799001 20799942 -206724636 - HERVL-A1-A1 LTR ERVL -4723 931 1 2983 103 23 21 chr3 20799956 20800392 -206724186 - MLT2A1 LTR ERVL -7 437 1 2298 107 0 0 chr3 20800607 20800905 -206723673 - AluY SINE Alu -13 298 1 396 0 0 0 chr3 20801083 20801127 -206723451 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 27 49 0 0 chr3 20801156 20801197 -206723381 + AT_rich Low_complexity Low_complexity 1 41 0 1885 161 14 0 chr3 20801197 20801483 -206723095 - AluSx SINE Alu -18 294 5 1632 183 3 43 chr3 20801485 20801808 -206722770 - AluJo SINE Alu -2 310 1 615 182 30 172 chr3 20801829 20802032 -206722546 - FAM SINE Alu 0 175 2 743 132 0 0 chr3 20802101 20802215 -206722363 + AluSp/q SINE Alu 192 305 -8 1718 119 0 4 chr3 20802286 20802522 -206722056 + AluSx SINE Alu 1 235 -77 21 36 0 0 chr3 20802730 20802758 -206721820 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr3 20803839 20803867 -206720711 + (T)n Simple_repeat Simple_repeat 1 28 0 2149 99 0 45 chr3 20804120 20804433 -206720145 + AluSg SINE Alu 1 299 -11 2234 113 0 7 chr3 20804685 20804994 -206719584 + AluSc SINE Alu 1 307 -2 1625 165 47 26 chr3 20805194 20805619 -206718959 - MER34B LTR ERV1 0 565 35 1924 143 36 0 chr3 20805776 20806056 -206718522 - AluJb SINE Alu -22 290 1 1858 175 3 7 chr3 20806083 20806386 -206718192 + AluJo SINE Alu 4 305 -7 1268 175 0 5 chr3 20806391 20806602 -206717976 + AluSx SINE Alu 3 212 -100 483 51 0 0 chr3 20806602 20806661 -206717917 + AluSg/x SINE Alu 76 134 -176 2186 112 7 0 chr3 20806661 20806947 -206717631 + AluSq SINE Alu 1 288 -25 27 29 0 0 chr3 20806947 20806981 -206717597 + AT_rich Low_complexity Low_complexity 1 34 0 234 0 0 0 chr3 20806989 20807015 -206717563 + (CAA)n Simple_repeat Simple_repeat 2 27 0 180 200 0 0 chr3 20807074 20807104 -206717474 - MIR SINE MIR -63 145 116 2188 117 0 7 chr3 20807324 20807622 -206716956 + AluSg SINE Alu 1 296 -14 2484 48 3 7 chr3 20807703 20807994 -206716584 + AluY SINE Alu 2 291 -20 714 213 7 33 chr3 20808785 20808935 -206715643 - AluJo SINE Alu -165 147 2 2206 219 75 67 chr3 20809068 20809189 -206715389 + L1MC4 LINE L1 7218 7336 -706 1650 157 0 75 chr3 20809189 20809340 -206715238 + AluJb SINE Alu 1 162 -150 2073 108 47 7 chr3 20809340 20809636 -206714942 + AluSx SINE Alu 1 308 -4 2258 93 14 0 chr3 20809639 20809928 -206714650 + AluSx SINE Alu 1 293 -19 1650 157 0 75 chr3 20809928 20810090 -206714488 + AluJb SINE Alu 164 294 -18 2206 219 75 67 chr3 20810090 20810749 -206713829 + L1MC4 LINE L1 7336 8005 -37 465 204 65 46 chr3 20810807 20810915 -206713663 - FLAM_A SINE Alu -32 110 1 2266 93 6 34 chr3 20810963 20811284 -206713294 - AluSq SINE Alu -1 312 1 2309 97 50 6 chr3 20811360 20811701 -206712877 - L1PA14 LINE L1 0 6161 5806 225 253 27 27 chr3 20812133 20812208 -206712370 + MIR SINE MIR 75 149 -59 2476 210 105 26 chr3 20812999 20813476 -206711102 - L1M4 LINE L1 -2369 3777 3339 279 0 0 0 chr3 20813476 20813507 -206711071 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2476 210 105 26 chr3 20813507 20813847 -206710731 - L1M4 LINE L1 -2807 3339 2895 1073 249 129 18 chr3 20813837 20814442 -206710136 - L1MCc LINE L1 -4889 1534 1245 * 279 0 0 0 chr3 20814442 20814473 -206710105 + (TG)n Simple_repeat Simple_repeat 2 32 0 1073 249 129 18 chr3 20814473 20814776 -206709802 - L1MCc LINE L1 -5178 1245 977 1038 297 88 22 chr3 20815056 20815547 -206709031 - L1MCc LINE L1 -5882 541 19 2278 122 0 0 chr3 20815660 20815972 -206708606 + AluSx SINE Alu 1 312 0 537 154 29 0 chr3 20815972 20816076 -206708502 + HSMAR2 DNA Mariner 1180 1286 -16 2202 98 3 0 chr3 20816244 20816530 -206708048 - AluSg SINE Alu -13 297 11 26 0 0 0 chr3 20816557 20816583 -206707995 + AT_rich Low_complexity Low_complexity 1 26 0 250 164 12 0 chr3 20817003 20817054 -206707524 - Alu SINE Alu -265 37 2 * 4835 105 42 29 chr3 20817054 20817853 -206706725 - HSMAR2 DNA Mariner -197 1105 339 1068 203 11 0 chr3 20817853 20818030 -206706548 - FAM SINE Alu -6 43 1 2201 113 0 38 chr3 20818035 20818288 -206706290 - HSMAR2 DNA Mariner -966 336 98 1575 126 0 0 chr3 20818288 20818503 -206706075 - AluSg/x SINE Alu -13 297 83 2201 113 0 38 chr3 20818503 20818595 -206705983 - HSMAR2 DNA Mariner -1204 98 4 956 154 0 13 chr3 20818615 20818771 -206705807 + AluJb SINE Alu 135 288 -24 21 36 0 0 chr3 20818771 20818799 -206705779 + AT_rich Low_complexity Low_complexity 1 28 0 971 215 36 75 chr3 20819212 20819240 -206705338 - AluJo SINE Alu -7 295 267 2413 66 0 23 chr3 20819240 20819545 -206705033 + AluSq SINE Alu 3 300 -13 971 215 36 75 chr3 20819545 20819823 -206704755 - AluJo SINE Alu -35 267 1 784 174 0 47 chr3 20820739 20820888 -206703690 - AluJo SINE Alu -169 143 2 225 217 33 17 chr3 20820894 20820954 -206703624 + MER5A DNA MER1_type 123 183 -6 805 142 0 17 chr3 20821953 20822073 -206702505 - FLAM_C SINE Alu -16 127 10 2125 116 13 7 chr3 20822100 20822401 -206702177 + AluSg SINE Alu 1 303 -7 826 265 233 12 chr3 20822620 20822985 -206701593 + L2 LINE L2 1296 1579 -1735 2595 64 0 0 chr3 20822985 20823296 -206701282 - AluY SINE Alu 0 311 1 826 265 233 12 chr3 20823296 20823440 -206701138 + L2 LINE L2 1579 1918 -1396 761 254 31 5 chr3 20823441 20823665 -206700913 - L2 LINE L2 -841 2473 2244 2174 80 0 14 chr3 20824568 20824887 -206699691 + AluY SINE Alu 1 315 0 29 47 0 0 chr3 20825277 20825320 -206699258 + AT_rich Low_complexity Low_complexity 1 43 0 1759 128 56 69 chr3 20825380 20825521 -206699057 + AluSx SINE Alu 1 142 -170 2191 67 4 4 chr3 20825521 20825790 -206698788 + AluSq SINE Alu 6 274 -39 1759 128 56 69 chr3 20825790 20825952 -206698626 + AluSx SINE Alu 142 300 -12 2271 107 7 0 chr3 20826186 20826494 -206698084 - AluSx SINE Alu -2 310 1 416 291 81 0 chr3 20827940 20828112 -206696466 + L2 LINE L2 1261 1446 -1868 314 224 71 12 chr3 20828249 20828334 -206696244 - L1MB7 LINE L1 -318 5866 5777 591 152 0 0 chr3 20828334 20828433 -206696145 - AluJb SINE Alu -6 306 208 1297 238 108 28 chr3 20828564 20828737 -206695841 + MLT1F LTR MaLR 1 159 -383 2407 65 0 7 chr3 20828737 20829030 -206695548 + AluSc SINE Alu 1 291 -18 1297 238 108 28 chr3 20829030 20829243 -206695335 + MLT1F LTR MaLR 159 418 -124 468 205 334 25 chr3 20829243 20829560 -206695018 - L2 LINE L2 -746 2568 2154 1064 193 0 5 chr3 20830001 20830193 -206694385 - AluJb SINE Alu -3 309 119 857 133 51 32 chr3 20830240 20830398 -206694180 - FAM SINE Alu -14 171 11 251 260 0 0 chr3 20830622 20830672 -206693906 + MER5A DNA MER1_type 35 84 -105 2231 90 7 10 chr3 20830778 20831077 -206693501 - AluSc SINE Alu -11 298 1 2225 114 0 3 chr3 20831596 20831895 -206692683 + AluSq SINE Alu 1 298 -15 465 192 0 13 chr3 20831896 20831974 -206692604 - AluJ/FLAM SINE Alu -234 78 2 813 71 27 0 chr3 20831974 20832086 -206692492 - Charlie1 DNA MER1_type -482 2279 2165 2142 118 20 16 chr3 20832637 20832941 -206691637 + AluSx SINE Alu 1 305 -7 261 350 0 12 chr3 20834011 20834091 -206690487 - MIR SINE MIR -83 125 47 1272 185 31 39 chr3 20834094 20834380 -206690198 + AluJo SINE Alu 1 284 -28 2198 101 17 3 chr3 20834392 20834689 -206689889 - AluSx SINE Alu -11 301 1 505 240 106 23 chr3 20834692 20834909 -206689669 - Charlie2 DNA MER1_type -552 2310 2076 2005 126 20 3 chr3 20834911 20835204 -206689374 - AluSx SINE Alu -14 298 1 26 0 0 0 chr3 20835210 20835236 -206689342 + AT_rich Low_complexity Low_complexity 1 26 0 736 194 104 0 chr3 20835244 20835276 -206689302 - AluJo SINE Alu -146 166 139 216 0 0 0 chr3 20835276 20835300 -206689278 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 736 194 104 0 chr3 20835300 20835401 -206689177 - AluJo SINE Alu -173 139 19 276 256 199 39 chr3 20835523 20835782 -206688796 - L1MC/D LINE L1 -406 5758 5450 1573 223 57 60 chr3 20836441 20836559 -206688019 + L1M4 LINE L1 4562 4679 -1484 1891 148 3 28 chr3 20836559 20836876 -206687702 + AluJo SINE Alu 1 309 -3 1573 223 57 60 chr3 20836876 20836931 -206687647 + L1M4 LINE L1 4679 4733 -1430 2101 106 0 17 chr3 20836931 20837223 -206687355 + AluSx SINE Alu 1 287 -25 1573 223 57 60 chr3 20837223 20837909 -206686669 + L1M4 LINE L1 4733 5419 -744 186 133 0 0 chr3 20837929 20837959 -206686619 + (A)n Simple_repeat Simple_repeat 1 30 0 2081 137 7 0 chr3 20838077 20838383 -206686195 + AluSq SINE Alu 2 309 -4 2501 71 0 0 chr3 20840602 20840899 -206683679 + AluSx SINE Alu 1 297 -15 2130 113 10 0 chr3 20842257 20842548 -206682030 - AluSx SINE Alu -18 294 1 208 250 0 0 chr3 20843396 20843436 -206681142 + polypyrimidine Low_complexity Low_complexity 2 41 0 2684 52 0 0 chr3 20843782 20844092 -206680486 - AluY SINE Alu -1 310 1 2300 95 0 22 chr3 20845852 20846167 -206678411 - AluSq SINE Alu -5 308 1 2316 92 3 25 chr3 20846175 20846491 -206678087 - AluSp SINE Alu -4 309 1 484 321 26 41 chr3 20846549 20846817 -206677761 - LTR16C LTR ERVL -33 458 195 769 65 0 0 chr3 20846821 20846913 -206677665 - AluY SINE Alu -16 295 204 2043 116 6 42 chr3 20847259 20847570 -206677008 - AluSq SINE Alu -13 300 1 3123 228 49 14 chr3 20847651 20848575 -206676003 - L1M4 LINE L1 -2701 3445 2490 1783 157 28 3 chr3 20848729 20849016 -206675562 - AluJo SINE Alu -18 294 1 2023 144 7 0 chr3 20849027 20849326 -206675252 - AluSq SINE Alu -12 301 1 2197 82 7 0 chr3 20849336 20849642 -206674936 - AluSx SINE Alu 0 308 1 3921 177 56 32 chr3 20849675 20850018 -206674560 + L1MB3 LINE L1 4598 4931 -1369 1323 186 39 36 chr3 20850018 20850150 -206674428 + AluJo SINE Alu 2 132 -180 2418 87 3 3 chr3 20850150 20850461 -206674117 + AluY SINE Alu 1 311 0 1323 186 39 36 chr3 20850461 20850608 -206673970 + AluJo SINE Alu 132 282 -30 3921 177 56 32 chr3 20850608 20851828 -206672750 + L1MB3 LINE L1 4931 6137 -163 1764 267 106 46 chr3 20852103 20853055 -206671523 + L2 LINE L2 2298 3311 -2 275 253 0 55 chr3 20853217 20853308 -206671270 + MIR SINE MIR 71 156 -106 601 172 25 14 chr3 20854069 20854214 -206670364 - LTR41 LTR ERVL -7 766 590 653 278 110 8 chr3 20854333 20854596 -206669982 - MER66A LTR ERV1 0 478 189 1929 74 0 23 chr3 20854766 20855022 -206669556 - AluY SINE Alu -61 250 1 1791 128 56 14 chr3 20855025 20855313 -206669265 - AluSx SINE Alu -12 300 1 2379 91 0 0 chr3 20855518 20855814 -206668764 + AluSc SINE Alu 4 299 -10 1166 118 0 0 chr3 20855814 20855975 -206668603 + AluSg/x SINE Alu 134 294 -18 2724 266 103 9 chr3 20856035 20856885 -206667693 - ERVL LTR ERVL -331 5433 4504 849 153 0 15 chr3 20856885 20857016 -206667562 + FLAM_C SINE Alu 1 129 -14 1997 133 3 10 chr3 20857027 20857321 -206667257 + AluSx SINE Alu 1 292 -20 4947 284 38 23 chr3 20857327 20859014 -206665564 - ERVL LTR ERVL -1248 4516 2738 417 39 0 0 chr3 20859014 20859065 -206665513 + (TG)n Simple_repeat Simple_repeat 1 51 0 4947 284 38 23 chr3 20859065 20859641 -206664937 - ERVL LTR ERVL -3026 2738 2172 2332 87 0 29 chr3 20859805 20860117 -206664461 + AluY SINE Alu 1 303 -8 1329 130 39 10 chr3 20860117 20860324 -206664254 + AluJb SINE Alu 85 297 -15 25 0 0 0 chr3 20860324 20860349 -206664229 + AT_rich Low_complexity Low_complexity 1 25 0 322 293 81 24 chr3 20860500 20860623 -206663955 - L2 LINE L2 0 3272 3143 1834 98 4 0 chr3 20860740 20860976 -206663602 - AluSx SINE Alu -75 237 1 345 235 113 75 chr3 20860978 20861191 -206663387 - L1MC5 LINE L1 -138 7823 7603 2283 109 0 0 chr3 20861719 20862021 -206662557 - AluSg SINE Alu -8 302 1 1764 158 15 0 chr3 20862449 20862721 -206661857 - AluSx SINE Alu -36 276 1 1641 178 16 13 chr3 20862920 20863223 -206661355 - AluJo SINE Alu -8 304 1 305 238 131 25 chr3 20863223 20863345 -206661233 - L1MC4 LINE L1 -4 8038 7904 1018 167 0 44 chr3 20863493 20863673 -206660905 + FAM SINE Alu 4 175 0 1459 178 127 50 chr3 20864066 20864247 -206660331 - Charlie1 DNA MER1_type -50 2711 2545 2185 101 0 36 chr3 20864247 20864555 -206660023 - AluSg SINE Alu -13 297 1 1459 178 127 50 chr3 20864555 20864789 -206659789 - Charlie1 DNA MER1_type -216 2545 2264 330 253 67 86 chr3 20865023 20865171 -206659407 - MIR3 SINE MIR -17 191 39 2348 100 3 0 chr3 20865171 20865481 -206659097 - AluSq SINE Alu 0 313 3 330 253 67 86 chr3 20865481 20865500 -206659078 - MIR3 SINE MIR -169 39 21 2047 130 17 3 chr3 20865729 20866029 -206658549 - AluSq SINE Alu -9 304 1 228 207 9 135 chr3 20866052 20866163 -206658415 - MLT1K LTR MaLR -158 430 334 24 53 0 0 chr3 20866169 20866207 -206658371 + AT_rich Low_complexity Low_complexity 1 38 0 951 227 37 29 chr3 20866224 20866497 -206658081 - AluSq SINE Alu -13 300 26 1883 139 0 28 chr3 20866598 20866886 -206657692 - AluSx SINE Alu -32 280 1 1402 205 95 5 chr3 20867703 20868147 -206656431 + Charlie2 DNA MER1_type 2378 2861 -1 1965 147 0 23 chr3 20868382 20868689 -206655889 - AluSx SINE Alu -11 301 2 1446 176 28 38 chr3 20868705 20868859 -206655719 - AluJo SINE Alu -25 287 133 243 0 0 0 chr3 20868859 20868886 -206655692 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2225 92 0 3 chr3 20868887 20869171 -206655407 - AluSx SINE Alu -27 285 3 1446 176 28 38 chr3 20869171 20869304 -206655274 - AluJo SINE Alu -178 134 1 735 144 0 24 chr3 20869312 20869437 -206655141 - L1MC3 LINE L1 -805 6980 6859 917 215 155 76 chr3 20869646 20869898 -206654680 - L1M4 LINE L1 -1135 5011 4780 1917 126 0 11 chr3 20869898 20870176 -206654402 - AluSx SINE Alu -37 275 1 917 215 155 76 chr3 20870176 20870421 -206654157 - L1M4 LINE L1 -1366 4780 4475 1057 174 31 0 chr3 20870574 20870735 -206653843 - FAM SINE Alu -9 166 1 822 188 0 0 chr3 20871536 20871669 -206652909 + FLAM_C SINE Alu 1 133 0 2542 66 0 0 chr3 20871761 20872063 -206652515 - AluY SINE Alu -9 302 1 1118 117 0 0 chr3 20872063 20872208 -206652370 - AluSq/x SINE Alu -168 145 1 257 241 0 17 chr3 20872290 20872348 -206652230 - MARNA DNA Mariner -279 307 251 1829 119 101 0 chr3 20872766 20873034 -206651544 + AluSx SINE Alu 1 295 -17 564 228 104 89 chr3 20873354 20873534 -206651044 - L1MC4 LINE L1 -249 7793 7617 1483 213 0 20 chr3 20873534 20873691 -206650887 - AluJo SINE Alu -18 294 135 204 40 0 0 chr3 20873691 20873716 -206650862 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2144 117 0 0 chr3 20873716 20873997 -206650581 - AluSx SINE Alu -31 281 1 1483 213 0 20 chr3 20873997 20874138 -206650440 - AluJo SINE Alu -175 137 1 564 228 104 89 chr3 20874138 20874166 -206650412 - L1MC4 LINE L1 -425 7617 7591 2011 133 3 7 chr3 20874166 20874467 -206650111 - AluSx SINE Alu -12 300 1 564 228 104 89 chr3 20874467 20874516 -206650062 - L1MC4 LINE L1 -451 7591 7531 1816 137 20 13 chr3 20874517 20874816 -206649762 - AluSx SINE Alu -11 301 1 2337 93 0 7 chr3 20874886 20875188 -206649390 - AluSq SINE Alu -6 307 8 2149 93 73 0 chr3 20875201 20875490 -206649088 - AluSx SINE Alu -2 310 1 315 180 0 16 chr3 20875492 20875553 -206649025 + MLT1L LTR MaLR 556 615 0 499 294 82 21 chr3 20875711 20875742 -206648836 - L1M4c LINE L1 -856 1887 1859 2124 111 9 19 chr3 20875742 20876057 -206648521 - AluSx SINE Alu 0 312 1 499 294 82 21 chr3 20876057 20876297 -206648281 - L1M4c LINE L1 -884 1859 1535 2080 110 31 0 chr3 20876297 20876589 -206647989 - AluSc SINE Alu -8 301 1 1472 153 4 4 chr3 20876594 20876823 -206647755 - AluJb SINE Alu -13 299 71 444 37 0 0 chr3 20876826 20876880 -206647698 + (TG)n Simple_repeat Simple_repeat 1 54 0 339 220 0 0 chr3 20876880 20876939 -206647639 - AluJ/FRAM SINE Alu -23 279 221 370 102 0 0 chr3 20877067 20877116 -206647462 + Alu SINE Alu 247 295 -7 1510 177 31 31 chr3 20877218 20877506 -206647072 + AluJb SINE Alu 1 288 -24 1547 192 0 55 chr3 20877608 20877920 -206646658 - AluJb SINE Alu -17 295 1 756 94 57 0 chr3 20877934 20878040 -206646538 - HY1 scRNA scRNA 0 112 1 4349 165 46 7 chr3 20878048 20878854 -206645724 - L1MB7 LINE L1 0 6184 5348 726 213 12 62 chr3 20878866 20879026 -206645552 - FAM SINE Alu -33 152 1 1300 116 11 11 chr3 20879030 20879219 -206645359 - AluJo SINE Alu -11 301 113 1004 220 15 100 chr3 20879220 20879561 -206645017 + L1ME1 LINE L1 5850 6161 -5 1082 169 0 0 chr3 20879562 20879728 -206644850 - AluJb SINE Alu -10 302 137 2259 97 0 7 chr3 20879728 20880028 -206644550 - AluY SINE Alu -13 298 1 24 0 0 0 chr3 20880331 20880355 -206644223 + AT_rich Low_complexity Low_complexity 1 24 0 1598 186 25 0 chr3 20880443 20880722 -206643856 - AluJb SINE Alu -26 286 1 201 241 37 19 chr3 20880852 20880906 -206643672 - L3 LINE CR1 -5 1572 1518 352 279 96 0 chr3 20880939 20881043 -206643535 - L2 LINE L2 -4 3309 3196 2305 70 3 10 chr3 20881781 20882082 -206642496 + AluSp SINE Alu 1 299 -14 261 261 29 0 chr3 20882100 20882169 -206642409 + L2 LINE L2 1715 1785 -1529 2065 115 3 3 chr3 20882631 20882927 -206641651 - AluSx SINE Alu -14 298 3 802 170 0 14 chr3 20883987 20884128 -206640450 + FLAM_C SINE Alu 2 140 -3 569 171 195 30 chr3 20884319 20884483 -206640095 + LTR41 LTR ERVL 1 191 -582 2136 101 3 7 chr3 20884685 20884992 -206639586 + AluSg SINE Alu 1 306 -4 207 189 0 0 chr3 20885139 20885192 -206639386 + T-rich Low_complexity Low_complexity 1 53 0 759 113 0 0 chr3 20885192 20885298 -206639280 - AluSq/x SINE Alu -205 107 2 2160 78 24 0 chr3 20885306 20885599 -206638979 - AluSg SINE Alu -8 302 3 892 84 0 0 chr3 20885608 20885727 -206638851 - AluY SINE Alu -7 304 186 1629 75 121 0 chr3 20885727 20885966 -206638612 - AluSx SINE Alu -44 268 1 310 180 0 16 chr3 20885968 20886029 -206638549 + MLT1L LTR MaLR 556 615 0 479 293 72 12 chr3 20886187 20886218 -206638360 - L1M4c LINE L1 -856 1887 1859 2019 111 9 19 chr3 20886218 20886533 -206638045 - AluSx SINE Alu 0 312 1 479 293 72 12 chr3 20886533 20886773 -206637805 - L1M4c LINE L1 -884 1859 1535 1978 110 31 0 chr3 20886773 20887065 -206637513 - AluSc SINE Alu -8 301 1 1392 153 4 4 chr3 20887070 20887299 -206637279 - AluJb SINE Alu -13 299 71 444 37 0 0 chr3 20887302 20887356 -206637222 + (TG)n Simple_repeat Simple_repeat 1 54 0 1530 186 0 11 chr3 20887356 20887636 -206636942 - AluJb SINE Alu -33 279 3 2376 70 0 0 chr3 20887704 20888003 -206636575 + AluY SINE Alu 1 299 -12 311 82 0 0 chr3 20888140 20888189 -206636389 + Alu SINE Alu 254 302 0 2235 89 0 0 chr3 20888290 20888592 -206635986 - AluY SINE Alu -9 302 1 267 273 128 23 chr3 20888592 20888764 -206635814 + L1MC5 LINE L1 7721 7910 -51 2243 103 3 0 chr3 20888781 20889091 -206635487 - AluSp SINE Alu -2 311 1 330 45 0 0 chr3 20889714 20889758 -206634820 + (TG)n Simple_repeat Simple_repeat 1 44 0 850 200 138 22 chr3 20889819 20890044 -206634534 - AluJb SINE Alu -22 290 40 1341 132 26 122 chr3 20890087 20890224 -206634354 + AluYb8 SINE Alu 1 93 -225 2258 72 0 3 chr3 20890224 20890514 -206634064 + AluY SINE Alu 3 291 -20 1341 132 26 122 chr3 20890514 20890687 -206633891 + AluYb8 SINE Alu 93 281 -37 248 74 23 35 chr3 20890687 20890729 -206633849 - Alu SINE Alu -186 116 85 220 288 18 54 chr3 20891851 20891888 -206632690 + GA-rich Low_complexity Low_complexity 1 38 -697 2053 108 3 0 chr3 20891888 20892214 -206632364 + AluSg SINE Alu 3 329 0 220 288 18 54 chr3 20892214 20892303 -206632275 + GA-rich Low_complexity Low_complexity 38 129 -606 2077 118 0 0 chr3 20892303 20892590 -206631988 + AluSg SINE Alu 1 287 -23 220 288 18 54 chr3 20892590 20892614 -206631964 + GA-rich Low_complexity Low_complexity 129 735 0 347 200 53 63 chr3 20897191 20897286 -206627292 - L2 LINE L2 -2 3270 3177 2261 98 0 0 chr3 20898003 20898310 -206626268 - AluY SINE Alu -2 309 3 221 304 120 0 chr3 20898836 20898928 -206625650 + MIR3 SINE MIR 96 198 -10 231 322 145 7 chr3 20899447 20899599 -206624979 + MIR3 SINE MIR 36 208 0 354 291 51 8 chr3 20899895 20900012 -206624566 + MIR3 SINE MIR 33 154 -54 2205 90 0 3 chr3 20900020 20900321 -206624257 + AluSx SINE Alu 6 305 -7 335 140 0 0 chr3 20901310 20901360 -206623218 - MER66B LTR ERV1 -142 344 295 26 0 0 0 chr3 20901747 20901773 -206622805 + AT_rich Low_complexity Low_complexity 1 26 0 2314 81 7 0 chr3 20901946 20902254 -206622324 - AluYa5 SINE Alu -1 310 1 22 35 0 0 chr3 20902408 20902437 -206622141 + AT_rich Low_complexity Low_complexity 1 29 0 1807 117 81 0 chr3 20902727 20903000 -206621578 - AluSc SINE Alu -14 295 1 805 265 101 47 chr3 20904117 20904370 -206620208 + L1MC4a LINE L1 5177 4912 -1234 2008 127 7 0 chr3 20904370 20904661 -206619917 - AluSx SINE Alu -19 293 1 805 265 101 47 chr3 20904661 20905183 -206619395 + L1MC4a LINE L1 4911 5403 -743 679 213 131 123 chr3 20905254 20905440 -206619138 - L1MD2 LINE L1 -21 6338 6155 192 40 0 0 chr3 20905440 20905465 -206619113 + (TG)n Simple_repeat Simple_repeat 2 26 0 679 213 131 123 chr3 20905465 20905502 -206619076 - L1MD2 LINE L1 -204 6155 6120 260 77 0 51 chr3 20905502 20905541 -206619037 - Alu SINE Alu -249 59 23 679 213 131 123 chr3 20905541 20905691 -206618887 - L1MD2 LINE L1 -239 6120 5923 * 1114 213 89 25 chr3 20905672 20905931 -206618647 - L1MDb LINE L1 -2015 4525 4241 2002 81 30 50 chr3 20905931 20906229 -206618349 - AluY SINE Alu -19 292 1 1114 213 89 25 chr3 20906229 20906284 -206618294 - L1MDb LINE L1 -2299 4241 4191 1329 197 48 24 chr3 20906287 20906582 -206617996 - AluJo SINE Alu -6 306 5 1359 225 101 12 chr3 20906586 20907003 -206617575 - L1MDb LINE L1 -3369 3171 2718 1286 159 8 16 chr3 20907013 20907258 -206617320 + AluJo SINE Alu 23 265 -47 318 50 0 0 chr3 20907270 20907310 -206617268 + (TA)n Simple_repeat Simple_repeat 1 40 0 389 253 48 7 chr3 20907313 20907459 -206617119 - L1MDb LINE L1 -3945 2776 2625 1295 170 27 0 chr3 20907485 20907708 -206616870 - AluJo SINE Alu -83 229 1 3952 193 45 95 chr3 20907708 20907801 -206616777 - L1MDb LINE L1 -3923 2617 2521 2129 115 0 10 chr3 20907801 20908114 -206616464 + AluSq SINE Alu 1 310 -3 3952 193 45 95 chr3 20908114 20908419 -206616159 - L1MDb LINE L1 -4019 2521 2202 799 158 8 8 chr3 20908419 20908546 -206616032 - FLAM_A SINE Alu -6 127 1 3952 193 45 95 chr3 20908546 20908620 -206615958 - L1MDb LINE L1 -4338 2202 2126 1912 138 0 13 chr3 20908620 20908918 -206615660 - AluSx SINE Alu -18 294 1 3952 193 45 95 chr3 20908918 20909044 -206615534 - L1MDb LINE L1 -4414 2126 1995 2068 80 24 7 chr3 20909044 20909332 -206615246 - AluSp SINE Alu -20 293 1 3952 193 45 95 chr3 20909332 20910249 -206614329 - L1MDb LINE L1 -4545 1995 1175 620 288 116 5 chr3 20910253 20910451 -206614127 - L1MDb LINE L1 -5511 1032 813 765 236 36 68 chr3 20910966 20911059 -206613519 - L1MDb LINE L1 -6236 307 213 725 175 0 0 chr3 20911059 20911173 -206613405 + FLAM_C SINE Alu 5 118 -15 312 70 0 0 chr3 20911175 20911218 -206613360 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 765 236 36 68 chr3 20911218 20911403 -206613175 - L1MDb LINE L1 -6331 212 34 2412 62 0 0 chr3 20911531 20911835 -206612743 - AluY SINE Alu -7 304 1 1602 193 0 7 chr3 20912105 20912410 -206612168 - AluJb SINE Alu -9 303 1 7360 138 111 94 chr3 20912831 20914498 -206610080 + pTR5 LTR ERV1 743 2438 0 210 218 100 82 chr3 20915481 20915591 -206608987 - L2 LINE L2 -12 3260 3149 248 100 0 40 chr3 20918474 20918524 -206606054 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 20919568 20919590 -206604988 + AT_rich Low_complexity Low_complexity 1 22 0 2398 72 0 3 chr3 20920109 20920415 -206604163 + AluY SINE Alu 1 305 -6 1750 154 17 3 chr3 20920552 20920844 -206603734 + AluJb SINE Alu 1 296 -16 330 293 120 33 chr3 20921023 20921173 -206603405 + MIR3 SINE MIR 31 193 -15 2350 66 3 0 chr3 20922056 20922361 -206602217 + AluSp SINE Alu 1 306 -7 408 298 8 33 chr3 20922759 20922880 -206601698 - MIR SINE MIR -60 148 31 2030 116 3 0 chr3 20922942 20923234 -206601344 - AluSx SINE Alu -19 293 1 2022 99 0 45 chr3 20923465 20923778 -206600800 + AluSg SINE Alu 1 299 -11 2269 85 0 0 chr3 20924030 20924325 -206600253 + AluSc SINE Alu 1 295 -14 1411 175 23 52 chr3 20924473 20924781 -206599797 + AluJo SINE Alu 1 299 -13 1195 112 0 32 chr3 20925061 20925248 -206599330 - AluSq SINE Alu -132 181 1 1955 101 22 0 chr3 20926266 20926571 -206598007 + AluSx SINE Alu 1 311 0 1428 183 8 0 chr3 20927236 20927498 -206597080 + AluJb SINE Alu 35 298 -14 1795 160 21 0 chr3 20927686 20927973 -206596605 + AluJb SINE Alu 1 293 -19 2349 93 0 0 chr3 20928202 20928512 -206596066 + AluSg SINE Alu 1 310 0 2430 57 0 0 chr3 20929062 20929362 -206595216 + AluY SINE Alu 1 300 -11 191 326 0 0 chr3 20929706 20929755 -206594823 + MIR SINE MIR 37 85 -123 378 263 158 45 chr3 20929914 20930047 -206594531 + MIR SINE MIR 20 167 -95 1765 86 21 4 chr3 20930135 20930378 -206594200 - AluSx SINE Alu -21 291 45 1782 139 0 28 chr3 20930492 20930780 -206593798 - AluSx SINE Alu -32 280 1 180 0 0 0 chr3 20931674 20931694 -206592884 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 462 198 119 10 chr3 20931695 20931796 -206592782 - FLAM_A SINE Alu -30 112 1 512 155 0 0 chr3 20931947 20932031 -206592547 - AluJ/FRAM SINE Alu 0 312 229 2147 152 0 7 chr3 20931951 20932261 -206592317 - AluSx SINE Alu -4 308 1 779 140 0 29 chr3 20932271 20932407 -206592171 - FLAM_C SINE Alu 0 133 2 2681 170 62 58 chr3 20932421 20932566 -206592012 - L1MA9 LINE L1 -38 6274 6131 1821 169 0 41 chr3 20932566 20932886 -206591692 + AluJb SINE Alu 1 307 -5 2681 170 62 58 chr3 20932886 20932907 -206591671 - L1MA9 LINE L1 -181 6131 6112 2253 96 14 0 chr3 20932907 20933198 -206591380 + AluSq SINE Alu 5 299 -14 2681 170 62 58 chr3 20933198 20933424 -206591154 - L1MA9 LINE L1 -200 6112 5888 2159 139 0 0 chr3 20933424 20933727 -206590851 - AluSx SINE Alu -9 303 1 2681 170 62 58 chr3 20933727 20933787 -206590791 - L1MA9 LINE L1 -424 5888 5830 1948 152 34 0 chr3 20933787 20934083 -206590495 - AluJo SINE Alu -6 306 1 2681 170 62 58 chr3 20934083 20934316 -206590262 - L1MA9 LINE L1 -482 5830 5583 2333 108 0 16 chr3 20934316 20934494 -206590084 - AluSx SINE Alu -1 311 139 2274 98 20 0 chr3 20934494 20934791 -206589787 - AluSp SINE Alu -10 303 1 2333 108 0 16 chr3 20934791 20934928 -206589650 - AluSx SINE Alu -173 139 1 1077 98 0 0 chr3 20934932 20935065 -206589513 - AluSq/x SINE Alu -180 133 1 717 163 54 0 chr3 20935066 20935213 -206589365 - L1 LINE L1 -1899 4247 4093 821 238 28 0 chr3 20935213 20935394 -206589184 + MER20 DNA MER1_type 33 218 -1 1958 118 0 64 chr3 20935448 20935761 -206588817 - AluSx SINE Alu -19 293 1 2148 99 22 0 chr3 20935835 20936134 -206588444 - AluSg SINE Alu 0 305 1 307 143 16 0 chr3 20936136 20936199 -206588379 - L1MA9 LINE L1 -687 5493 5430 2175 106 0 0 chr3 20936824 20937106 -206587472 + AluSg SINE Alu 21 302 -8 361 296 37 12 chr3 20937588 20937750 -206586828 - L1M4 LINE L1 -1494 4652 4487 25 0 0 0 chr3 20937836 20937861 -206586717 + AT_rich Low_complexity Low_complexity 1 25 0 1024 158 0 0 chr3 20938190 20938364 -206586214 - AluJb SINE Alu 0 307 134 2470 75 3 35 chr3 20938599 20938917 -206585661 - AluSp SINE Alu -5 308 1 240 59 0 0 chr3 20938992 20939026 -206585552 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1922 119 22 0 chr3 20939026 20939295 -206585283 - AluSq SINE Alu -35 278 4 2600 70 0 3 chr3 20939308 20939620 -206584958 - AluY SINE Alu 0 311 1 1863 161 31 0 chr3 20939686 20939977 -206584601 + AluJb SINE Alu 1 300 -12 1956 193 35 88 chr3 20941392 20942042 -206582536 + LTR6A LTR ERV1 1 564 0 282 379 71 32 chr3 20942779 20943031 -206581547 + L3 LINE CR1 617 858 -719 1717 184 14 10 chr3 20943031 20943325 -206581253 - AluJo SINE Alu -17 295 1 282 379 71 32 chr3 20943325 20943539 -206581039 + L3 LINE CR1 858 1101 -476 199 375 25 0 chr3 20943958 20944038 -206580540 - L2 LINE L2 -222 3050 2969 2234 104 3 0 chr3 20944511 20944810 -206579768 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 20947550 20947572 -206577006 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 20947882 20947905 -206576673 + (GGCTG)n Simple_repeat Simple_repeat 4 26 0 1840 132 103 0 chr3 20955750 20956023 -206568555 - AluSx SINE Alu -11 301 1 191 206 59 59 chr3 20956442 20956510 -206568068 + L2 LINE L2 3192 3259 -13 2252 106 0 26 chr3 20957010 20957313 -206567265 - AluSx SINE Alu -17 295 1 2276 92 38 0 chr3 20957318 20957610 -206566968 - AluSp SINE Alu -10 303 1 449 34 17 0 chr3 20957884 20957943 -206566635 + (TG)n Simple_repeat Simple_repeat 2 61 0 994 145 0 0 chr3 20957986 20958124 -206566454 + AluSq/x SINE Alu 1 138 -175 2499 51 3 7 chr3 20958144 20958436 -206566142 + AluY SINE Alu 1 291 -20 1696 165 63 3 chr3 20959505 20959790 -206564788 - AluJb SINE Alu -10 302 1 255 307 98 37 chr3 20959857 20960235 -206564343 + L1MC5 LINE L1 7085 7485 -476 997 109 0 14 chr3 20960238 20960376 -206564202 + AluSq/x SINE Alu 1 136 -177 2080 112 18 0 chr3 20960376 20960652 -206563926 + AluSx SINE Alu 1 281 -31 2233 117 3 0 chr3 20960652 20960949 -206563629 - AluSg SINE Alu -11 299 1 326 273 111 6 chr3 20960949 20961121 -206563457 + L1MC5 LINE L1 7721 7910 -51 206 219 0 0 chr3 20961294 20961335 -206563243 + C-rich Low_complexity Low_complexity 5 45 0 619 215 30 32 chr3 20961511 20961633 -206562945 - L1ME LINE L1 -717 5449 5328 2283 93 7 10 chr3 20961633 20961933 -206562645 - AluY SINE Alu -12 299 1 619 215 30 32 chr3 20961933 20962076 -206562502 - L1ME LINE L1 -838 5328 5182 2776 16 0 7 chr3 20962079 20962416 -206562162 - AluYb8 SINE Alu 0 318 1 2364 93 0 13 chr3 20962420 20962733 -206561845 - AluSx SINE Alu -3 309 1 294 361 19 38 chr3 20962759 20962917 -206561661 + MIR3 SINE MIR 42 196 -12 * 424 284 168 7 chr3 20962902 20963057 -206561521 + MER5A DNA MER1_type 10 189 0 197 33 33 0 chr3 20964512 20964542 -206560036 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 22 35 0 0 chr3 20969570 20969599 -206554979 + AT_rich Low_complexity Low_complexity 1 29 0 312 130 31 2 chr3 20969854 20969923 -206554655 + Alu SINE Alu 2 47 -253 235 367 48 14 chr3 20970359 20970506 -206554072 - MIR3 SINE MIR -23 185 34 376 267 105 35 chr3 20970607 20970699 -206553879 + Charlie8 DNA MER1_type 47 131 -2286 1796 162 28 7 chr3 20970699 20970989 -206553589 + AluJb SINE Alu 1 296 -16 376 267 105 35 chr3 20970989 20971068 -206553510 + Charlie8 DNA MER1_type 131 230 -2187 2071 142 0 0 chr3 20971146 20971428 -206553150 + AluSx SINE Alu 1 282 -30 2304 89 3 3 chr3 20971629 20971920 -206552658 + AluSg1 SINE Alu 1 291 -18 1858 153 3 10 chr3 20971996 20972284 -206552294 + AluJb SINE Alu 1 286 -26 2137 113 10 3 chr3 20972291 20972591 -206551987 + AluSx SINE Alu 1 302 -10 2035 109 32 3 chr3 20972853 20973137 -206551441 + AluSc SINE Alu 1 292 -17 237 115 94 0 chr3 20973137 20973233 -206551345 + (TA)n Simple_repeat Simple_repeat 1 105 0 698 206 0 22 chr3 20973242 20973378 -206551200 + FLAM_C SINE Alu 1 133 0 1218 161 10 87 chr3 20973439 20973650 -206550928 + L1MC3 LINE L1 6684 6867 -918 2222 127 0 0 chr3 20973650 20973957 -206550621 + AluSx SINE Alu 1 307 -5 1218 161 10 87 chr3 20973957 20974044 -206550534 + L1MC3 LINE L1 6867 6959 -826 6186 50 16 42 chr3 20975297 20976621 -206547957 + SVA Other Other 1 1123 -263 312 94 0 0 chr3 20976621 20976674 -206547904 + (TAAAAA)n Simple_repeat Simple_repeat 2 54 0 1812 137 0 4 chr3 20976677 20976933 -206547645 + AluSg SINE Alu 54 308 -2 357 188 232 29 chr3 20977048 20977186 -206547392 + L1ME1 LINE L1 5996 6161 -5 1651 178 42 0 chr3 20977233 20977520 -206547058 + AluJo SINE Alu 1 299 -13 551 280 15 114 chr3 20977526 20977717 -206546861 + ERVL LTR ERVL 1204 1364 -4400 2349 114 0 0 chr3 20977717 20978024 -206546554 + AluSx SINE Alu 5 311 -1 551 280 15 114 chr3 20978024 20978096 -206546482 + ERVL LTR ERVL 1364 1441 -4323 416 188 12 0 chr3 20978116 20978196 -206546382 - MER58B DNA MER1_type 0 341 261 277 236 0 0 chr3 20978258 20978313 -206546265 + ERVL LTR ERVL 1383 1437 -4048 1414 232 0 4 chr3 20978766 20979038 -206545540 + AluJo SINE Alu 10 280 -32 220 167 0 33 chr3 20979041 20979101 -206545477 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2260 116 0 0 chr3 20979109 20979412 -206545166 + AluSx SINE Alu 1 303 -9 2466 93 0 3 chr3 20979437 20979747 -206544831 + AluSx SINE Alu 1 309 -3 272 295 72 65 chr3 20979758 20979897 -206544681 + L3 LINE CR1 967 1106 -471 612 227 159 12 chr3 20979902 20980065 -206544513 + LTR41 LTR ERVL 1 187 -586 1840 109 8 8 chr3 20980555 20980867 -206543711 + AluSc SINE Alu 26 337 0 894 122 157 35 chr3 21181673 21181845 -206342733 - PRIMA41-int LTR ERV1 -6201 1555 1363 * 1942 88 42 67 chr3 21181837 21182167 -206342411 - PRIMA41-int LTR ERV1 -6826 930 609 857 145 23 0 chr3 21182167 21182298 -206342280 + AluSq/x SINE Alu 2 135 -177 2087 147 0 3 chr3 21182299 21182612 -206341966 + AluSx SINE Alu 1 312 0 874 128 13 0 chr3 21182624 21182780 -206341798 + L1MCa LINE L1 1204 1361 -5065 15758 82 11 2 chr3 21182912 21185310 -206339268 - L1P4 LINE L1 -509 6381 3956 3858 168 40 4 chr3 21185458 21186198 -206338380 - L1P4 LINE L1 -4302 2561 1795 1991 117 37 27 chr3 21186198 21186496 -206338082 + AluSp SINE Alu 1 301 -12 2128 108 3 3 chr3 21186502 21186809 -206337769 + L1P3 LINE L1 5 311 -6150 1882 97 4 8 chr3 21186938 21187206 -206337372 - L1P LINE L1 -4328 1818 1552 6485 77 24 17 chr3 21187207 21188184 -206336394 - L1PA4 LINE L1 -2 6153 5175 7799 123 35 25 chr3 21188287 21189622 -206334956 - L1PBa LINE L1 -4121 2742 1395 1702 241 120 40 chr3 21189619 21190221 -206334357 - L1PBa LINE L1 -5806 1057 408 * 5832 105 46 5 chr3 21190352 21191260 -206333318 + L1MA2 LINE L1 5204 6148 -156 2215 117 7 0 chr3 21191260 21191560 -206333018 + AluSq SINE Alu 1 302 -11 2015 119 39 3 chr3 21191560 21191844 -206332734 + AluSx SINE Alu 1 295 -17 358 331 15 45 chr3 21191845 21192091 -206332487 - MIR3 SINE MIR -22 240 2 326 104 10 188 chr3 21192511 21192607 -206331971 + L1PB3 LINE L1 6074 6152 -2 332 318 53 8 chr3 21192636 21192768 -206331810 - MER91C DNA MER1_type 0 140 3 374 296 118 13 chr3 21192796 21192948 -206331630 + MIR3 SINE MIR 33 200 -8 500 351 25 4 chr3 21192954 21193196 -206331382 + L3 LINE CR1 1244 1490 -87 26 0 0 0 chr3 21194017 21194043 -206330535 + AT_rich Low_complexity Low_complexity 1 26 0 1618 191 36 28 chr3 21194393 21194781 -206329797 - pTR5 LTR ERV1 -1309 1129 739 1474 183 154 34 chr3 21194931 21195419 -206329159 + LTR61 LTR ERV1 16 595 0 623 182 4 37 chr3 21195484 21195628 -206328950 + L1M2 LINE L1 2804 2944 -3906 831 177 27 14 chr3 21195628 21195809 -206328769 - FRAM SINE Alu 0 180 1 604 200 164 0 chr3 21195809 21195974 -206328604 + L1M2 LINE L1 2938 3129 -3719 8115 192 50 15 chr3 21196117 21198382 -206326196 + L1PA12 LINE L1 1543 3897 -3687 687 111 0 10 chr3 21198382 21198481 -206326097 + MER4A LTR ERV1 1 98 -566 1908 109 8 77 chr3 21198481 21198854 -206325724 + MER4A LTR ERV1 261 664 0 2278 113 61 72 chr3 21198857 21199360 -206325218 + MER4A-int LTR ERV1 1 563 -6035 1370 234 76 12 chr3 21199555 21199897 -206324681 + LTR49-int LTR ERV1 1861 2224 -4107 4200 123 37 16 chr3 21199911 21200820 -206323758 + LTR49-int LTR ERV1 199 1262 -5590 4475 80 67 7 chr3 21200821 21201512 -206323066 + LTR49-int LTR ERV1 1764 2495 -4103 1169 181 95 0 chr3 21201512 21201744 -206322834 - LTR8 LTR ERV1 -434 257 4 3004 158 19 45 chr3 21201745 21202410 -206322168 + pTR5 LTR ERV1 743 1390 -1048 * 5888 235 7 36 chr3 21202408 21204267 -206320311 - Harlequin LTR ERV1 -1264 6004 4062 4950 84 34 0 chr3 21204238 21204964 -206319614 - Harlequin LTR ERV1 -4324 2572 1822 * 393 193 169 0 chr3 21204969 21205052 -206319526 + LTR8 LTR ERV1 156 252 -439 357 130 0 0 chr3 21205055 21205109 -206319469 - Harlequin LTR ERV1 -5176 1720 1667 374 97 21 86 chr3 21205109 21205202 -206319376 - L1PA8 LINE L1 0 6172 6086 4632 153 44 10 chr3 21205413 21206568 -206318010 - L1PB3 LINE L1 -135 6019 4834 8009 32 0 0 chr3 21206569 21207579 -206316999 - L1PA5 LINE L1 -3 6151 5138 7728 25 0 0 chr3 21207579 21208474 -206316104 + L1PA5 LINE L1 4267 5161 -985 1175 66 13 0 chr3 21208474 21208625 -206315953 - LTR10A-int LTR ERV1 -2850 2736 2584 * 7741 197 23 19 chr3 21208596 21211315 -206313263 - LTR10A-int LTR ERV1 -3015 4112 1384 795 183 27 98 chr3 21211307 21211563 -206313015 - LTR10A-int LTR ERV1 -5839 810 506 * 1581 200 32 6 chr3 21211556 21211871 -206312707 - LTR10A-int LTR ERV1 -6324 325 3 3211 114 41 63 chr3 21211884 21212443 -206312135 - LTR10A LTR ERV1 -62 547 1 6408 156 56 9 chr3 21212443 21213979 -206310599 - L1PBb LINE L1 -3424 2779 1096 2485 67 7 0 chr3 21213979 21214276 -206310302 + AluY SINE Alu 1 299 -12 6408 156 56 9 chr3 21214276 21215016 -206309562 - L1PBb LINE L1 -5107 1096 393 1044 204 39 27 chr3 21216177 21216437 -206308141 - L1MB7 LINE L1 -20 6164 5902 25 75 0 0 chr3 21216441 21216494 -206308084 + AT_rich Low_complexity Low_complexity 1 53 0 434 255 141 67 chr3 21216502 21216561 -206308017 - L1ME4a LINE L1 -158 5963 5905 1722 238 78 9 chr3 21216561 21217087 -206307491 - L1MB7 LINE L1 -290 5894 5333 1020 106 0 0 chr3 21217095 21217227 -206307351 - L1PA15 LINE L1 -5 6160 6029 258 32 0 0 chr3 21217239 21217295 -206307283 - AluY SINE Alu 0 305 250 1376 77 22 11 chr3 21217295 21217476 -206307102 - AluY SINE Alu -128 183 1 1335 121 24 5 chr3 21217476 21217682 -206306896 - L1PA15 LINE L1 -126 6039 5830 735 166 17 66 chr3 21217682 21217731 -206306847 - L1MB7 LINE L1 -823 5323 5273 2370 60 0 0 chr3 21217731 21218038 -206306540 - AluY SINE Alu 0 307 1 735 166 17 66 chr3 21218038 21218167 -206306411 - L1MB7 LINE L1 -873 5273 5152 6221 211 43 55 chr3 21218386 21219344 -206305234 - L1MB7 LINE L1 -982 5164 4196 1151 167 18 0 chr3 21219344 21219512 -206305066 - FAM SINE Alu -4 171 1 6221 211 43 55 chr3 21219512 21219798 -206304780 - L1MB7 LINE L1 -1950 4196 3908 1944 109 32 7 chr3 21219798 21220081 -206304497 - AluSg SINE Alu -18 292 3 2156 124 0 0 chr3 21220083 21220373 -206304205 - AluSq SINE Alu -23 290 1 6221 211 43 55 chr3 21220373 21220818 -206303760 - L1MB7 LINE L1 -2239 3907 3496 495 0 0 0 chr3 21220818 21220873 -206303705 + (TG)n Simple_repeat Simple_repeat 2 56 0 6221 211 43 55 chr3 21220873 21221173 -206303405 - L1MB7 LINE L1 -2650 3496 3194 26 0 0 0 chr3 21221396 21221422 -206303156 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr3 21221422 21221446 -206303132 + (G)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 21221527 21221549 -206303029 + GC_rich Low_complexity Low_complexity 1 22 0 187 167 0 0 chr3 21221579 21221609 -206302969 + C-rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chr3 21221660 21221695 -206302883 + GC_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 21221735 21221769 -206302809 + AT_rich Low_complexity Low_complexity 1 34 0 6036 108 105 126 chr3 21221907 21223312 -206301266 + pTR5 LTR ERV1 1063 2438 0 4204 135 95 24 chr3 21223313 21224201 -206300377 + MER4-int LTR ERV1 2729 3679 -2919 13406 110 55 11 chr3 21224202 21226316 -206298262 + MER4-int LTR ERV1 3837 6043 -555 845 145 14 14 chr3 21226473 21226611 -206297967 + MER4B LTR ERV1 455 592 -18 14224 167 25 10 chr3 21226611 21230267 -206294311 + L1PA14 LINE L1 2458 6160 -1 497 135 0 11 chr3 21230660 21230749 -206293829 - L1MB7 LINE L1 -8 6176 6089 186 242 45 61 chr3 21230761 21230827 -206293751 - L3 LINE CR1 -19 1558 1494 241 279 0 16 chr3 21231186 21231247 -206293331 - MIR SINE MIR -130 78 19 324 326 79 18 chr3 21232040 21232267 -206292311 - MIR SINE MIR -8 254 14 14621 144 118 11 chr3 21232719 21236007 -206288571 + L1PA16 LINE L1 3 3643 -3219 11599 179 23 21 chr3 21236138 21238544 -206286034 + L1PB1 LINE L1 2632 5049 -1102 2283 118 0 0 chr3 21238544 21238840 -206285738 + AluSx SINE Alu 1 296 -16 11599 179 23 21 chr3 21238840 21239944 -206284634 + L1PB1 LINE L1 5049 6149 -2 25 31 0 0 chr3 21240230 21240262 -206284316 + AT_rich Low_complexity Low_complexity 1 32 0 1766 192 31 17 chr3 21240349 21240709 -206283869 + MLT1A1 LTR MaLR 1 365 0 279 200 24 12 chr3 21240709 21240794 -206283784 + (CATA)n Simple_repeat Simple_repeat 3 88 0 5887 130 19 1 chr3 21241159 21242049 -206282529 + HSMAR2 DNA Mariner 1 906 -396 3100 193 45 19 chr3 21242049 21242744 -206281834 + L1 LINE L1 3943 4655 -1491 1403 173 37 9 chr3 21242746 21243065 -206281513 - MSTA LTR MaLR -2 426 1 5097 129 65 15 chr3 21243065 21244529 -206280049 + L1PA16 LINE L1 5367 6878 -4 770 204 69 33 chr3 21244530 21244805 -206279773 + L1M4 LINE L1 2951 3235 -2911 3214 122 31 68 chr3 21245006 21245261 -206279317 + MER41C LTR ERV1 1 264 -290 2332 65 0 0 chr3 21245261 21245537 -206279041 + AluY SINE Alu 17 292 -19 3214 122 31 68 chr3 21245537 21245856 -206278722 + MER41C LTR ERV1 264 554 0 2593 74 38 69 chr3 21245876 21245964 -206278614 + PRIMA41-int LTR ERV1 525 614 -7142 2004 132 27 0 chr3 21245964 21246259 -206278319 - AluSq SINE Alu -9 304 2 2593 74 38 69 chr3 21246259 21246589 -206277989 + PRIMA41-int LTR ERV1 614 930 -6826 * 29318 120 22 12 chr3 21246581 21250892 -206273686 + PRIMA41-int LTR ERV1 1363 5720 -2036 3062 241 78 9 chr3 21250892 21251818 -206272760 + L1PB1 LINE L1 22 1011 -5852 15284 190 18 14 chr3 21251850 21257004 -206267574 + L1PB1 LINE L1 1297 6517 -350 230 152 0 0 chr3 21257001 21257047 -206267531 + L1MC4 LINE L1 6658 6703 -1339 * 269 226 28 66 chr3 21257108 21257289 -206267289 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 2318 118 22 11 chr3 21257299 21257663 -206266915 + L1PB1 LINE L1 6498 6865 -2 13327 116 23 31 chr3 21257663 21259260 -206265318 + MER41C-int LTR ERV1 5706 7285 -471 2519 70 0 0 chr3 21259260 21259560 -206265018 + AluY SINE Alu 1 300 -11 13327 116 23 31 chr3 21259560 21260029 -206264549 + MER41C-int LTR ERV1 7285 7756 0 2150 122 58 0 chr3 21260029 21260357 -206264221 + MER41C LTR ERV1 1 347 -207 207 163 41 0 chr3 21260364 21260413 -206264165 + (TA)n Simple_repeat Simple_repeat 1 51 0 279 0 0 0 chr3 21260425 21260456 -206264122 + (CA)n Simple_repeat Simple_repeat 2 32 0 1248 134 20 10 chr3 21260456 21260657 -206263921 + MER41C LTR ERV1 352 554 0 2183 109 0 0 chr3 21260670 21260954 -206263624 - AluSx SINE Alu -17 295 12 2190 121 0 10 chr3 21261088 21261393 -206263185 + AluSg SINE Alu 1 302 -8 2071 97 0 0 chr3 21261515 21261774 -206262804 + AluSx SINE Alu 37 295 -17 318 314 47 24 chr3 21261853 21262002 -206262576 - MIR SINE MIR -67 141 19 2313 108 0 0 chr3 21262572 21262868 -206261710 - AluSq SINE Alu -17 296 1 219 69 0 0 chr3 21263592 21263621 -206260957 + (TCC)n Simple_repeat Simple_repeat 1 29 0 241 26 53 0 chr3 21263673 21263711 -206260867 + (TCC)n Simple_repeat Simple_repeat 3 42 0 219 69 0 0 chr3 21263760 21263789 -206260789 + (TCC)n Simple_repeat Simple_repeat 1 29 0 254 29 29 0 chr3 21263839 21263874 -206260704 + (TCC)n Simple_repeat Simple_repeat 3 38 0 225 65 0 0 chr3 21263924 21263955 -206260623 + (TCC)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr3 21266642 21266663 -206257915 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 202 156 328 0 chr3 21267023 21267087 -206257491 + MER5A DNA MER1_type 71 155 -34 269 97 16 81 chr3 21267111 21267173 -206257405 - L2 LINE L2 -253 3060 3003 183 238 7 35 chr3 21267740 21267883 -206256695 + (TGG)n Simple_repeat Simple_repeat 1 139 0 306 337 6 0 chr3 21268081 21268244 -206256334 + (TGG)n Simple_repeat Simple_repeat 2 165 0 334 248 40 10 chr3 21268922 21269023 -206255555 - MIR SINE MIR -66 196 93 5270 69 19 1 chr3 21270256 21270941 -206253637 - L1PA7 LINE L1 -1 6153 5457 503 272 27 16 chr3 21271117 21271301 -206253277 - L1M4 LINE L1 -2549 3597 3412 648 163 0 102 chr3 21273232 21273379 -206251199 - AluJb SINE Alu -16 296 165 212 307 61 35 chr3 21273421 21273535 -206251043 + MIR SINE MIR 23 139 -123 2606 117 3 8 chr3 21273567 21273944 -206250634 - THE1C LTR MaLR 0 375 1 10772 114 9 27 chr3 21273944 21275554 -206249024 - THE1C-int LTR MaLR 0 1580 1 2635 101 5 11 chr3 21275554 21275931 -206248647 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr3 21276014 21276037 -206248541 + AT_rich Low_complexity Low_complexity 1 23 0 2286 123 0 0 chr3 21276668 21276977 -206247601 - AluSx SINE Alu -1 311 3 276 259 49 34 chr3 21276980 21277185 -206247393 - L1M4 LINE L1 -842 5304 5097 1612 118 36 3 chr3 21277188 21277492 -206247086 + MER1A DNA MER1_type 1 363 -109 2229 161 39 31 chr3 21277492 21278036 -206246542 - MLT2A2 LTR ERVL 0 554 1 800 105 21 49 chr3 21278040 21278183 -206246395 + MER1A DNA MER1_type 395 533 0 1673 282 34 2 chr3 21278186 21278772 -206245806 - L1M4 LINE L1 -1052 5094 4490 8023 198 15 12 chr3 21278786 21280497 -206244081 + L1 LINE L1 3564 5279 -867 22 0 0 0 chr3 21280497 21280519 -206244059 + AT_rich Low_complexity Low_complexity 1 22 0 20738 37 1 1 chr3 21280520 21283864 -206240714 - L1PA4 LINE L1 -4 6151 2809 8812 190 21 39 chr3 21283851 21283896 -206240682 - L1 LINE L1 -1315 4831 4787 * 2025 139 3 0 chr3 21283896 21284205 -206240373 - AluSp SINE Alu -3 310 1 8812 190 21 39 chr3 21284205 21286298 -206238280 - L1 LINE L1 -1359 4787 2732 3184 122 63 17 chr3 21286313 21286836 -206237742 - LTR10A LTR ERV1 -62 547 1 6676 224 21 25 chr3 21286838 21288343 -206236235 - LTR10A-int LTR ERV1 -1 6648 5150 31 58 0 0 chr3 21288460 21288512 -206236066 + GC_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr3 21288604 21288647 -206235931 + GC_rich Low_complexity Low_complexity 1 43 0 2852 132 13 13 chr3 21288788 21289414 -206235164 + L1PA16 LINE L1 5436 6162 -4 321 245 43 11 chr3 21289417 21289511 -206235067 - L1M4 LINE L1 -1665 4481 4385 3413 198 43 28 chr3 21289559 21290293 -206234285 - L1MB8 LINE L1 -81 6097 5331 2035 179 20 3 chr3 21290293 21290645 -206233933 + MLT1A1 LTR MaLR 4 361 -4 3413 198 43 28 chr3 21290645 21291106 -206233472 - L1MB8 LINE L1 -847 5331 4878 13997 190 26 22 chr3 21291239 21291858 -206232720 - L1PB2 LINE L1 0 6867 6252 2302 93 0 0 chr3 21291858 21292160 -206232418 + AluSc SINE Alu 1 302 -7 13997 190 26 22 chr3 21292160 21294381 -206230197 - L1PB2 LINE L1 -615 6252 4042 2203 118 0 6 chr3 21294381 21294695 -206229883 - AluSx SINE Alu 0 312 1 13997 190 26 22 chr3 21294695 21297237 -206227341 - L1PB2 LINE L1 -2825 4042 1395 3759 177 66 123 chr3 21297234 21298351 -206226227 - L1PB2 LINE L1 -5806 1057 4 * 1019 197 52 8 chr3 21298345 21298594 -206225984 - L1MB8 LINE L1 -2344 3802 3543 * 1384 30 0 0 chr3 21298599 21298765 -206225813 + AluY SINE Alu 146 311 0 1212 202 18 0 chr3 21298769 21299041 -206225537 - L1MB8 LINE L1 -2596 3550 3274 735 146 30 73 chr3 21299026 21299190 -206225388 + L1MA3 LINE L1 6148 6304 -1 * 7378 153 10 3 chr3 21299348 21301356 -206223222 - L1PA11 LINE L1 -11 6163 4123 4773 256 41 43 chr3 21301379 21303018 -206221560 - L1PA12 LINE L1 -4861 2723 2 578 221 43 0 chr3 21303274 21303414 -206221164 + MER104 DNA Tc2 35 180 0 1734 218 58 25 chr3 21304269 21304718 -206219860 + MLT1C LTR MaLR 1 464 -3 2746 263 59 23 chr3 21305674 21306435 -206218143 + L1M4 LINE L1 2 801 -5741 351 0 0 0 chr3 21306435 21306474 -206218104 + (CA)n Simple_repeat Simple_repeat 2 40 0 2746 263 59 23 chr3 21306474 21306612 -206217966 + L1M4 LINE L1 801 933 -5609 1203 312 89 46 chr3 21306688 21307228 -206217350 + L2 LINE L2 1783 2367 -947 239 0 32 0 chr3 21307228 21307259 -206217319 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1203 312 89 46 chr3 21307259 21307480 -206217098 + L2 LINE L2 2367 2577 -737 440 241 132 17 chr3 21307518 21307692 -206216886 + MLT1J2 LTR MaLR 1 194 -256 474 176 98 59 chr3 21307728 21307881 -206216697 + MLT1J2 LTR MaLR 290 448 -2 577 300 47 6 chr3 21308762 21308932 -206215646 + MER91A DNA MER1_type 20 196 0 319 226 58 7 chr3 21308957 21309068 -206215510 - MIR SINE MIR -46 216 100 336 169 157 12 chr3 21310298 21310381 -206214197 + L2 LINE L2 3183 3277 -36 202 300 57 0 chr3 21310473 21310543 -206214035 - MIR SINE MIR -83 179 106 292 246 29 10 chr3 21311142 21311353 -206213225 + (CCGCT)n Simple_repeat Simple_repeat 1 215 0 260 265 60 17 chr3 21312254 21312371 -206212207 - LTR67 LTR ERVL -5 552 431 334 260 52 0 chr3 21312543 21312620 -206211958 - L2 LINE L2 -249 3023 2943 314 219 16 0 chr3 21312620 21312684 -206211894 - MLT1E1 LTR MaLR -589 65 1 361 249 72 55 chr3 21312780 21312961 -206211617 - HAL1b LINE L1 -1 1347 1164 250 284 12 0 chr3 21312961 21313042 -206211536 + GA-rich Low_complexity Low_complexity 1 82 0 686 272 64 79 chr3 21313043 21313379 -206211199 - HAL1b LINE L1 -195 1153 813 1925 113 7 24 chr3 21313379 21313701 -206210877 - AluSx SINE Alu 0 318 2 686 272 64 79 chr3 21313701 21313854 -206210724 - HAL1b LINE L1 -535 813 668 2031 123 3 3 chr3 21313854 21314156 -206210422 - AluSx SINE Alu -6 306 5 686 272 64 79 chr3 21314156 21314193 -206210385 - HAL1b LINE L1 -680 668 632 181 258 56 90 chr3 21314212 21314301 -206210277 - MIR SINE MIR -146 116 31 257 228 95 62 chr3 21314618 21314766 -206209812 - MLT1J LTR MaLR -28 587 366 367 228 25 0 chr3 21314820 21314899 -206209679 - MLT1J LTR MaLR -332 179 99 589 291 57 22 chr3 21315094 21315321 -206209257 - MIR SINE MIR -25 237 3 290 308 164 0 chr3 21315321 21315425 -206209153 - MER5B DNA MER1_type -1 177 57 391 296 34 9 chr3 21315435 21315585 -206208993 - MIR SINE MIR -65 197 45 200 206 69 138 chr3 21316663 21316823 -206207755 - MER5A DNA MER1_type -6 183 35 477 0 0 0 chr3 21316839 21316892 -206207686 + (CA)n Simple_repeat Simple_repeat 2 54 0 254 296 63 28 chr3 21317856 21317998 -206206580 + L3 LINE CR1 1351 1497 -80 200 330 78 29 chr3 21318005 21318108 -206206470 - MER5B DNA MER1_type -70 108 1 610 280 78 14 chr3 21318190 21318408 -206206170 - MIR SINE MIR -3 259 28 228 247 37 25 chr3 21318424 21318505 -206206073 + MIR SINE MIR 62 143 -65 251 291 23 36 chr3 21318841 21318971 -206205607 + MIR SINE MIR 20 146 -62 499 334 80 40 chr3 21319004 21319354 -206205224 - L2 LINE L2 0 3313 2950 193 138 0 0 chr3 21319374 21319403 -206205175 + L2 LINE L2 3225 3253 -19 2337 57 10 7 chr3 21320274 21320573 -206204005 + AluY SINE Alu 2 301 -10 788 214 44 6 chr3 21320829 21321011 -206203567 - MIR SINE MIR -22 240 52 322 333 0 28 chr3 21321420 21321528 -206203050 - MIR SINE MIR -138 124 20 213 300 88 0 chr3 21321558 21321638 -206202940 - L2 LINE L2 -44 3269 3183 349 234 11 43 chr3 21321754 21321848 -206202730 + L2 LINE L2 3223 3313 0 304 300 40 20 chr3 21321884 21321984 -206202594 - L2 LINE L2 -216 3056 2955 419 78 16 0 chr3 21322052 21322116 -206202462 + (CA)n Simple_repeat Simple_repeat 2 66 0 240 225 155 0 chr3 21322126 21322197 -206202381 + MER112 DNA MER1_type 125 206 -54 270 314 33 25 chr3 21323089 21323210 -206201368 + L2 LINE L2 2985 3106 -166 615 221 33 107 chr3 21323309 21323553 -206201025 + MIR SINE MIR 16 241 -21 192 77 0 0 chr3 21323665 21323691 -206200887 + (TCC)n Simple_repeat Simple_repeat 2 27 0 526 276 170 50 chr3 21323941 21324184 -206200394 + L2 LINE L2 2340 2552 -761 1513 256 101 24 chr3 21324184 21324731 -206199847 - MLT1G LTR MaLR 0 590 2 526 276 170 50 chr3 21324731 21325354 -206199224 + L2 LINE L2 2552 3299 -14 234 0 0 0 chr3 21325369 21325395 -206199183 + (TG)n Simple_repeat Simple_repeat 2 27 0 341 250 12 0 chr3 21325477 21325557 -206199021 + MIR SINE MIR 65 145 -63 251 200 9 67 chr3 21326528 21326633 -206197945 + G-rich Low_complexity Low_complexity 6 104 0 24 0 0 0 chr3 21326844 21326868 -206197710 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 21326877 21326901 -206197677 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 21328329 21328353 -206196225 + GC_rich Low_complexity Low_complexity 1 24 0 40 21 0 0 chr3 21328508 21328555 -206196023 + GC_rich Low_complexity Low_complexity 1 47 0 194 229 38 95 chr3 21328690 21328795 -206195783 + MIR3 SINE MIR 86 184 -24 850 226 19 28 chr3 21328936 21329148 -206195430 - MIR SINE MIR -7 255 46 396 322 28 17 chr3 21329393 21329570 -206195008 + MIR SINE MIR 59 237 -25 283 293 68 94 chr3 21329690 21330042 -206194536 - L2 LINE L2 -74 3239 2897 829 276 162 48 chr3 21330213 21330869 -206193709 + L2 LINE L2 2566 3311 -2 21 71 0 0 chr3 21332438 21332480 -206192098 + AT_rich Low_complexity Low_complexity 1 42 0 2207 121 3 3 chr3 21334166 21334472 -206190106 - AluSq SINE Alu -7 306 1 977 172 11 1 chr3 21334754 21334975 -206189603 - L1MCa LINE L1 -4979 1628 1204 2137 147 0 3 chr3 21334987 21335300 -206189278 - AluSx SINE Alu 0 312 1 873 152 23 0 chr3 21335301 21335433 -206189145 - AluJo SINE Alu -177 135 1 358 236 55 0 chr3 21335435 21335545 -206189033 - L1MCa LINE L1 -5248 1178 1063 10875 148 31 12 chr3 21335557 21335707 -206188871 - L1MA2 LINE L1 0 6304 6158 2010 116 41 10 chr3 21335707 21335727 -206188851 - AluSp SINE Alu -12 301 283 225 0 0 0 chr3 21335727 21335752 -206188826 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2010 116 41 10 chr3 21335752 21336023 -206188555 - AluSp SINE Alu -30 283 1 * 2257 117 7 0 chr3 21336023 21336322 -206188256 - AluSq SINE Alu -12 301 1 10875 148 31 12 chr3 21336322 21338636 -206185942 - L1MA2 LINE L1 -445 5859 3770 2037 148 7 0 chr3 21338636 21338933 -206185645 - AluSx SINE Alu -13 299 1 10875 148 31 12 chr3 21338933 21339645 -206184933 - L1MA2 LINE L1 -2534 3770 3073 * 25895 82 8 3 chr3 21339640 21344214 -206180364 - L1PA7 LINE L1 0 6469 1867 42368 42 4 3 chr3 21344215 21350360 -206174218 - L1PA4 LINE L1 -2 6153 2 12201 107 5 7 chr3 21350360 21352251 -206172327 - L1PA7 LINE L1 -4579 1872 5 2039 117 37 27 chr3 21352257 21352555 -206172023 - AluSp SINE Alu -12 301 1 2390 224 23 5 chr3 21352591 21353195 -206171383 - L1MA2 LINE L1 -3065 3081 2467 1203 209 72 0 chr3 21353197 21353504 -206171074 - L1MCa LINE L1 -5344 1082 754 243 62 0 0 chr3 21354095 21354127 -206170451 - MIR SINE MIR -118 144 113 483 239 83 63 chr3 21354652 21354760 -206169818 - MIR SINE MIR -18 244 140 1323 166 42 143 chr3 21354760 21355194 -206169384 - MLT1B LTR MaLR 0 390 1 483 239 83 63 chr3 21355194 21355300 -206169278 - MIR SINE MIR -122 140 31 219 333 0 0 chr3 21355341 21355407 -206169171 + MIR SINE MIR 160 225 -37 2655 274 112 30 chr3 21355820 21356516 -206168062 + L1MEc LINE L1 53 691 -5705 1562 219 0 3 chr3 21356516 21356799 -206167779 + AluJo SINE Alu 1 282 -30 2655 274 112 30 chr3 21356799 21357634 -206166944 + L1MEc LINE L1 691 1875 -4521 818 175 0 0 chr3 21357639 21357759 -206166819 - FLAM_A SINE Alu -13 120 1 1973 128 0 3 chr3 21357917 21358221 -206166357 - Tigger2 DNA MER2_type -1 2717 2415 1570 122 9 107 chr3 21358218 21358546 -206166032 - Tigger2a DNA MER2_type -138 296 1 * 297 0 0 0 chr3 21358563 21358596 -206165982 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 238 0 0 chr3 21358596 21358638 -206165940 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 1357 125 175 12 chr3 21358728 21359000 -206165578 - AluSg1 SINE Alu 0 311 1 2554 50 0 3 chr3 21359041 21359340 -206165238 - AluY SINE Alu -13 298 1 228 233 75 83 chr3 21359700 21359820 -206164758 + MER5B DNA MER1_type 1 119 -59 287 279 82 74 chr3 21359874 21359996 -206164582 - MIR SINE MIR -90 172 50 209 319 99 60 chr3 21360047 21360329 -206164249 + L2 LINE L2 2341 2633 -681 * 372 300 75 57 chr3 21360316 21360543 -206164035 + L2 LINE L2 3042 3272 0 241 322 102 0 chr3 21360603 21360721 -206163857 + L2 LINE L2 3141 3270 -2 728 290 64 53 chr3 21360730 21361089 -206163489 + L2 LINE L2 2951 3313 0 213 308 88 0 chr3 21361096 21361187 -206163391 + MIR SINE MIR 64 162 -100 1319 262 51 15 chr3 21361215 21361608 -206162970 + MLT1I LTR MaLR 2 408 -1 392 248 144 13 chr3 21361781 21361934 -206162644 - MIR SINE MIR -70 192 20 209 307 228 0 chr3 21362633 21362747 -206161831 - MIR SINE MIR -77 185 46 186 261 23 85 chr3 21362867 21362997 -206161581 + MIR SINE MIR 31 152 -110 533 329 38 41 chr3 21363166 21363510 -206161068 - L1ME LINE L1 -513 5651 5309 195 272 140 44 chr3 21363700 21363912 -206160666 + L2 LINE L2 2744 3023 -249 2210 106 0 0 chr3 21363912 21364196 -206160382 + AluSg SINE Alu 7 290 -20 195 272 140 44 chr3 21364196 21364255 -206160323 + L2 LINE L2 3023 3075 -197 846 276 162 49 chr3 21365306 21365963 -206158615 + L2 LINE L2 2566 3311 -2 234 292 21 0 chr3 21366292 21366388 -206158190 - L1ME3 LINE L1 -215 5947 5850 340 259 33 106 chr3 21367141 21367415 -206157163 + MER102a DNA MER1_type 72 325 -5 409 286 62 26 chr3 21367751 21367978 -206156600 + L2 LINE L2 2625 2859 -455 200 271 21 0 chr3 21368162 21368210 -206156368 + L2 LINE L2 3195 3243 -70 311 288 50 58 chr3 21368608 21368747 -206155831 - MIR SINE MIR -55 153 16 192 40 0 0 chr3 21368785 21368810 -206155768 + (CA)n Simple_repeat Simple_repeat 2 26 0 285 171 143 14 chr3 21368874 21368944 -206155634 - MIR SINE MIR -121 141 63 269 227 15 0 chr3 21369404 21369470 -206155108 + MER116 DNA Mariner 2 68 -12 791 251 64 30 chr3 21369733 21370143 -206154435 - L2 LINE L2 -310 3003 2564 792 180 60 18 chr3 21370629 21370796 -206153782 - MLT1J LTR MaLR -297 214 41 321 286 31 79 chr3 21371031 21371258 -206153320 - MLT1K LTR MaLR -214 374 159 1543 169 35 58 chr3 21371304 21371648 -206152930 - MLT1B LTR MaLR 0 390 55 227 250 148 37 chr3 21371751 21371859 -206152719 - L2 LINE L2 -221 3051 2932 429 215 23 23 chr3 21372069 21372241 -206152337 + CT-rich Low_complexity Low_complexity 1 172 0 204 40 0 0 chr3 21372499 21372524 -206152054 + (TTCCC)n Simple_repeat Simple_repeat 2 26 0 1460 181 75 10 chr3 21372551 21372843 -206151735 - AluJo SINE Alu -1 311 1 303 298 31 31 chr3 21373146 21373311 -206151267 - L1ME3 LINE L1 -734 5428 5292 205 258 118 43 chr3 21373543 21373636 -206150942 - MIR3 SINE MIR -53 155 56 299 295 135 8 chr3 21373742 21373905 -206150673 + MIR3 SINE MIR 11 191 -59 463 278 66 59 chr3 21374044 21374317 -206150261 + L2 LINE L2 2500 2774 -540 359 280 133 0 chr3 21374334 21374552 -206150026 + L2 LINE L2 2888 3134 -179 331 244 92 42 chr3 21374660 21374779 -206149799 + MIR SINE MIR 138 262 0 410 311 73 51 chr3 21375011 21375284 -206149294 + L2 LINE L2 3010 3288 -25 329 350 173 9 chr3 21375461 21375675 -206148903 - L3 LINE CR1 -722 855 607 309 296 0 10 chr3 21375762 21375860 -206148718 - MER103 DNA DNA -13 153 57 23 33 0 0 chr3 21376279 21376309 -206148269 + AT_rich Low_complexity Low_complexity 1 30 0 399 89 0 0 chr3 21377599 21377655 -206146923 + (CA)n Simple_repeat Simple_repeat 2 57 0 765 300 56 4 chr3 21377886 21378119 -206146459 - MIR SINE MIR 0 262 18 249 284 0 0 chr3 21378149 21378223 -206146355 - L2 LINE L2 -284 2988 2915 319 286 87 24 chr3 21378897 21379023 -206145555 - MIR SINE MIR -70 192 59 435 213 28 19 chr3 21379579 21379687 -206144891 + L2 LINE L2 3204 3312 -1 449 279 62 37 chr3 21379967 21380128 -206144450 + MIR SINE MIR 77 241 -21 286 275 67 75 chr3 21380387 21380507 -206144071 + MIR3 SINE MIR 62 180 -28 432 253 129 50 chr3 21380752 21380954 -206143624 + MIR SINE MIR 35 252 -10 347 315 21 35 chr3 21381116 21381259 -206143319 + MIR SINE MIR 108 248 -14 339 291 146 0 chr3 21381317 21381427 -206143151 - L2 LINE L2 0 3313 3188 576 154 64 8 chr3 21381645 21381765 -206142813 - MIR SINE MIR -71 137 36 392 253 73 73 chr3 21381956 21382134 -206142444 - MIR SINE MIR -8 254 77 486 201 44 84 chr3 21383111 21383285 -206141293 - MIR SINE MIR -65 143 14 230 343 28 0 chr3 21383447 21383555 -206141023 - L1MEd LINE L1 -5568 551 441 1414 51 0 0 chr3 21384045 21384223 -206140355 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2145 133 1 1 chr3 21384223 21384517 -206140061 - AluSx SINE Alu -39 273 1 401 246 128 77 chr3 21384671 21384866 -206139712 - MIR SINE MIR -35 227 23 290 359 58 0 chr3 21385308 21385411 -206139167 - MIR SINE MIR -51 211 103 510 289 47 26 chr3 21385653 21385843 -206138735 - MIR SINE MIR -48 214 21 223 366 181 12 chr3 21386558 21386801 -206137777 + L3 LINE CR1 555 838 -739 456 174 0 0 chr3 21386815 21386907 -206137671 + CT-rich Low_complexity Low_complexity 3 94 0 335 309 246 5 chr3 21387700 21387920 -206136658 + L2 LINE L2 3000 3272 0 180 298 0 0 chr3 21388253 21388300 -206136278 - MIR3 SINE MIR -53 155 109 811 302 126 29 chr3 21391141 21391562 -206133016 + L2 LINE L2 2852 3313 0 400 191 191 0 chr3 21391607 21391733 -206132845 - MER53 DNA DNA 0 189 40 4228 206 42 31 chr3 21391744 21392981 -206131597 - L1MD1 LINE L1 -1 6241 4992 25 75 0 0 chr3 21392981 21393034 -206131544 + AT_rich Low_complexity Low_complexity 1 53 0 1798 186 0 12 chr3 21393054 21393387 -206131191 - L1MB3 LINE L1 -2 6181 5853 200 328 48 16 chr3 21393571 21393696 -206130882 - MIR3 SINE MIR -65 143 15 799 276 25 21 chr3 21394445 21394688 -206129890 - MIR SINE MIR -12 250 7 594 240 105 40 chr3 21395414 21395566 -206129012 + MIR SINE MIR 48 217 -45 786 194 156 0 chr3 21395566 21395746 -206128832 - MER3 DNA MER1_type 0 209 2 594 240 105 40 chr3 21395746 21395793 -206128785 + MIR SINE MIR 217 260 -2 199 348 70 0 chr3 21396413 21396528 -206128050 - MIR SINE MIR -22 240 118 389 369 6 13 chr3 21396746 21396903 -206127675 - MIR SINE MIR -86 176 21 2045 123 3 3 chr3 21397006 21397308 -206127270 + AluSx SINE Alu 1 302 -10 218 309 15 0 chr3 21397380 21397448 -206127130 - MIR SINE MIR -77 185 117 447 318 50 11 chr3 21397585 21397764 -206126814 + MIR SINE MIR 56 241 -21 795 281 56 35 chr3 21398184 21398561 -206126017 + L2 LINE L2 2245 2629 -685 923 275 83 27 chr3 21398737 21399272 -206125306 + L2 LINE L2 2583 3154 -159 967 246 33 0 chr3 21399457 21399668 -206124910 - MIR SINE MIR -25 237 20 288 307 109 15 chr3 21399699 21399836 -206124742 - L2 LINE L2 0 3313 3164 405 184 4 45 chr3 21400179 21400445 -206124133 + (TGGA)n Simple_repeat Simple_repeat 1 254 0 24 71 0 0 chr3 21400451 21400479 -206124099 + GC_rich Low_complexity Low_complexity 1 28 0 304 270 167 29 chr3 21401238 21401442 -206123136 - L2 LINE L2 -198 3115 2884 500 219 130 34 chr3 21402196 21402342 -206122236 - MER5A DNA MER1_type -26 163 4 1169 201 75 60 chr3 21402353 21402672 -206121906 - MER33 DNA MER1_type 0 324 1 261 333 181 9 chr3 21402672 21402888 -206121690 - L3 LINE CR1 -105 1472 1220 338 277 23 54 chr3 21402942 21403072 -206121506 - MIR SINE MIR -84 178 53 312 27 0 0 chr3 21403939 21403976 -206120602 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 185 342 111 26 chr3 21403982 21404099 -206120479 - L2 LINE L2 -15 3298 3172 251 305 12 0 chr3 21404227 21404309 -206120269 - L2 LINE L2 -335 2978 2896 498 253 29 58 chr3 21404974 21405148 -206119430 + MER5B DNA MER1_type 5 173 -5 2969 162 21 0 chr3 21405305 21405816 -206118762 - L1MB7 LINE L1 0 6184 5663 281 289 18 24 chr3 21406337 21406503 -206118075 + L2 LINE L2 2871 3035 -237 1182 271 95 24 chr3 21406544 21407006 -206117572 - L2 LINE L2 -2 3311 2817 353 293 54 24 chr3 21407208 21407375 -206117203 - L1MC5 LINE L1 -187 7774 7603 201 154 0 0 chr3 21407642 21407681 -206116897 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 200 321 0 18 chr3 21408230 21408342 -206116236 + (TG)n Simple_repeat Simple_repeat 1 110 0 457 183 0 62 chr3 21408949 21409219 -206115359 + GA-rich Low_complexity Low_complexity 1 253 0 759 120 0 46 chr3 21409225 21409400 -206115178 + (GGA)n Simple_repeat Simple_repeat 2 168 0 761 318 74 19 chr3 21409567 21409985 -206114593 - LTR16A LTR ERVL -9 441 1 401 261 39 26 chr3 21410066 21410219 -206114359 + MIR SINE MIR 31 185 -77 277 281 132 0 chr3 21410633 21410747 -206113831 - LTR33 LTR ERVL -28 493 365 277 277 50 43 chr3 21411842 21411983 -206112595 - MIR3 SINE MIR -61 147 6 693 274 109 43 chr3 21412158 21412461 -206112117 - MLT1L LTR MaLR -8 607 285 183 217 22 167 chr3 21412514 21412652 -206111926 - MIR SINE MIR -75 133 16 615 283 55 81 chr3 21413006 21413388 -206111190 - MLT1K LTR MaLR -6 582 211 680 297 246 24 chr3 21414197 21414814 -206109764 - L3 LINE CR1 -58 1519 766 389 319 92 0 chr3 21415563 21415792 -206108786 - LTR16A LTR ERVL 0 450 201 556 232 106 50 chr3 21415878 21416076 -206108502 - MER63A DNA MER1_type 0 210 2 581 358 46 7 chr3 21416439 21416746 -206107832 - L1MC4a LINE L1 -1874 5934 5616 1001 266 113 6 chr3 21416918 21416982 -206107596 - LTR33 LTR ERVL 0 521 465 2243 183 15 29 chr3 21416982 21417436 -206107142 + L1MB8 LINE L1 5731 6178 0 1001 266 113 6 chr3 21417436 21417735 -206106843 - LTR33 LTR ERVL -56 465 119 184 176 0 0 chr3 21418127 21418161 -206106417 - L2 LINE L2 -18 3254 3221 4031 162 57 14 chr3 21418760 21419549 -206105029 - L1MB7 LINE L1 0 6184 5362 1518 300 30 35 chr3 21419566 21420245 -206104333 - L1ME3A LINE L1 -13 6157 5483 182 247 106 12 chr3 21420798 21420883 -206103695 + L2 LINE L2 3173 3265 -7 183 184 0 0 chr3 21421433 21421471 -206103107 + GA-rich Low_complexity Low_complexity 3 40 0 259 323 32 0 chr3 21421587 21421680 -206102898 + MER58A DNA MER1_type 1 96 -11 701 214 20 2 chr3 21421680 21421852 -206102726 - L1ME3 LINE L1 -226 5936 5765 287 193 114 11 chr3 21421855 21421943 -206102635 - MIR SINE MIR -67 141 45 32 0 0 0 chr3 21422880 21422912 -206101666 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 21423374 21423402 -206101176 + AT_rich Low_complexity Low_complexity 1 28 0 226 321 0 12 chr3 21423404 21423485 -206101093 - L1PB1 LINE L1 -174 5977 5898 432 0 0 0 chr3 21424037 21424085 -206100493 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 266 0 0 chr3 21424613 21424790 -206099788 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 409 244 49 34 chr3 21425123 21425278 -206099300 + MIR SINE MIR 105 262 0 475 294 112 6 chr3 21425526 21425696 -206098882 - Charlie8 DNA MER1_type -2205 212 25 318 290 75 0 chr3 21425743 21425850 -206098728 - MIR SINE MIR -61 147 33 189 0 0 0 chr3 21425933 21425954 -206098624 + (CA)n Simple_repeat Simple_repeat 2 22 0 1707 235 55 55 chr3 21427377 21427888 -206096690 - MLT1H LTR MaLR 0 549 39 324 252 170 0 chr3 21427997 21428132 -206096446 + L2 LINE L2 2423 2580 -734 304 200 147 0 chr3 21428187 21428262 -206096316 + MLT1J2 LTR MaLR 100 185 -265 258 233 17 0 chr3 21428295 21428355 -206096223 + MLT1J2 LTR MaLR 270 330 -120 345 235 182 0 chr3 21428460 21428592 -206095986 + L2 LINE L2 2886 3041 -231 869 246 84 0 chr3 21428698 21428913 -206095665 + MIR SINE MIR 5 237 -25 383 176 147 20 chr3 21428951 21429053 -206095525 + L2 LINE L2 3199 3313 0 2032 210 58 20 chr3 21430184 21430688 -206093890 + Charlie1b DNA MER1_type 1 523 0 413 268 56 91 chr3 21430750 21430856 -206093722 - MIR SINE MIR 0 262 154 3286 82 47 9 chr3 21430856 21431342 -206093236 + L1PB1 LINE L1 5678 6180 0 413 268 56 91 chr3 21431342 21431465 -206093113 - MIR SINE MIR -108 154 40 575 180 17 41 chr3 21431530 21431702 -206092876 - MER53 DNA DNA -20 169 2 2042 115 7 0 chr3 21432104 21432392 -206092186 - AluSx SINE Alu -22 290 1 228 246 51 51 chr3 21432398 21432536 -206092042 - L1ME4a LINE L1 0 6121 5984 487 322 60 21 chr3 21432625 21432858 -206091720 - L1MC4a LINE L1 -1982 5826 5585 269 333 57 21 chr3 21432971 21433112 -206091466 + L3 LINE CR1 1423 1568 -9 204 345 76 17 chr3 21433741 21433860 -206090718 + MIR SINE MIR 21 146 -116 221 333 191 14 chr3 21434488 21434629 -206089949 - MIR SINE MIR 0 262 97 591 350 0 18 chr3 21434713 21434936 -206089642 - MIR SINE MIR -37 225 7 1932 225 53 28 chr3 21434937 21435430 -206089148 - MLT1D LTR MaLR 0 505 1 900 208 19 42 chr3 21435890 21436102 -206088476 + MER3 DNA MER1_type 3 209 0 832 264 113 4 chr3 21437684 21437915 -206086663 - MIR SINE MIR -5 257 2 194 286 0 0 chr3 21437935 21437984 -206086594 - L2 LINE L2 -12 3260 3212 310 229 229 0 chr3 21438034 21438178 -206086400 - LTR33 LTR ERVL 0 521 345 309 238 74 0 chr3 21438328 21438450 -206086128 - LTR33 LTR ERVL -387 134 4 275 193 48 0 chr3 21439507 21439590 -206084988 - LTR33 LTR ERVL -134 387 301 242 270 103 16 chr3 21439601 21439727 -206084851 - LTR33 LTR ERVL -384 137 1 405 273 6 28 chr3 21440174 21440319 -206084259 + MIR SINE MIR 54 195 -64 465 120 104 32 chr3 21440395 21440520 -206084058 - MER3 DNA MER1_type 0 2615 2482 353 213 50 0 chr3 21440520 21440600 -206083978 - MER3 DNA MER1_type -80 129 46 301 211 17 23 chr3 21440755 21440846 -206083732 - MIR SINE MIR -59 149 59 259 412 52 14 chr3 21441122 21441413 -206083165 - L3 LINE CR1 -14 1563 1262 344 257 88 52 chr3 21441774 21441910 -206082668 - MIR SINE MIR -78 184 44 341 333 34 0 chr3 21442045 21442162 -206082416 + MIR SINE MIR 72 192 -70 190 265 265 10 chr3 21442800 21442898 -206081680 + MIR SINE MIR 23 145 -63 298 341 82 13 chr3 21443155 21443291 -206081287 - MIR3 SINE MIR -34 174 24 1271 227 58 19 chr3 21443291 21443599 -206080979 + MER33 DNA MER1_type 1 320 -4 298 341 82 13 chr3 21443599 21443625 -206080953 - MIR3 SINE MIR -184 24 1 181 266 13 51 chr3 21443784 21443863 -206080715 - MIR SINE MIR -82 126 51 182 268 0 0 chr3 21444411 21444452 -206080126 + MIR SINE MIR 109 149 -59 494 330 25 6 chr3 21444808 21445070 -206079508 + L1MC4a LINE L1 5638 5824 -346 578 294 95 32 chr3 21445751 21445972 -206078606 - MIR SINE MIR -5 257 23 276 325 17 34 chr3 21446065 21446182 -206078396 - MIR SINE MIR -142 120 6 838 298 104 8 chr3 21447281 21447776 -206076802 - L2 LINE L2 -6 3307 2775 204 361 101 35 chr3 21448064 21448233 -206076345 + MIR SINE MIR 2 181 -81 189 231 115 0 chr3 21448258 21448310 -206076268 + L2 LINE L2 1767 1824 -1490 * 299 268 12 24 chr3 21448294 21448376 -206076202 + MIR SINE MIR 63 143 -65 272 320 40 20 chr3 21448792 21448942 -206075636 + L3 LINE CR1 1272 1424 -153 496 133 10 10 chr3 21449220 21449318 -206075260 + GA-rich Low_complexity Low_complexity 2 99 0 366 135 0 0 chr3 21449318 21449370 -206075208 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 334 399 59 16 chr3 21449377 21449680 -206074898 + HAL1 LINE L1 880 1195 -1312 661 241 8 34 chr3 21449705 21450141 -206074437 + GA-rich Low_complexity Low_complexity 1 424 0 880 275 44 39 chr3 21500416 21500776 -206023802 + L1 LINE L1 2418 2779 -3367 253 202 81 0 chr3 21500801 21500900 -206023678 - L1M3d LINE L1 -4790 1775 1669 1429 198 32 13 chr3 21500901 21501215 -206023363 - LTR10B LTR ERV1 0 547 249 15263 259 42 34 chr3 21501272 21506535 -206018043 - HERVI LTR ERV1 -17 7768 2284 182 333 122 0 chr3 21506535 21506625 -206017953 - MER5A DNA MER1_type -16 173 73 15263 259 42 34 chr3 21506625 21508271 -206016307 - HERVI LTR ERV1 -5501 2284 652 2111 226 73 11 chr3 21508301 21508846 -206015732 - HERVI LTR ERV1 -6066 583 5 1464 161 35 21 chr3 21508846 21509132 -206015446 - LTR10B LTR ERV1 0 547 258 626 259 72 44 chr3 21509211 21509710 -206014868 - L1M3d LINE L1 -5277 1265 753 427 269 17 0 chr3 21509720 21509839 -206014739 - L1M3d LINE L1 -5724 922 802 358 303 63 34 chr3 21510142 21510380 -206014198 - L1M3d LINE L1 -6293 249 5 1808 164 17 7 chr3 21510796 21511088 -206013490 + AluJb SINE Alu 1 295 -17 28 48 0 0 chr3 21512548 21512590 -206011988 + AT_rich Low_complexity Low_complexity 1 42 0 1601 163 65 4 chr3 21512733 21513009 -206011569 - AluJb SINE Alu -19 293 1 2194 119 0 0 chr3 21515633 21515928 -206008650 + AluSx SINE Alu 1 295 -17 5573 135 50 12 chr3 21517356 21518365 -206006213 - L1MA9 LINE L1 -1 6311 5265 1283 244 78 24 chr3 21518491 21518992 -206005586 - L1ME2 LINE L1 -34 6130 5603 1694 107 137 0 chr3 21518992 21519255 -206005323 + AluSq SINE Alu 3 301 -2 1230 138 0 10 chr3 21519281 21519476 -206005102 + AluSg/x SINE Alu 118 310 0 861 265 61 14 chr3 21519480 21519964 -206004614 - L1ME2 LINE L1 -547 5617 5078 572 224 0 0 chr3 21519981 21520106 -206004472 + L1 LINE L1 3745 3869 -2277 1363 279 29 7 chr3 21520144 21520693 -206003885 - L1ME2 LINE L1 -1098 5048 4488 6334 177 26 29 chr3 21520705 21521204 -206003374 + L1PA16 LINE L1 3564 4063 -2103 2680 40 0 0 chr3 21521204 21521505 -206003073 + AluY SINE Alu 1 301 -10 6334 177 26 29 chr3 21521505 21523626 -206000952 + L1PA16 LINE L1 4063 6165 -1 901 254 17 50 chr3 21524080 21524541 -206000037 + L1PA16 LINE L1 5719 6164 -2 201 74 0 0 chr3 21524554 21524581 -205999997 + (A)n Simple_repeat Simple_repeat 1 27 0 240 227 0 80 chr3 21524594 21524682 -205999896 - L1MEd LINE L1 -5943 176 96 21 36 0 0 chr3 21525276 21525304 -205999274 + AT_rich Low_complexity Low_complexity 1 28 0 54 49 0 0 chr3 21525594 21525676 -205998902 + AT_rich Low_complexity Low_complexity 1 82 0 227 287 150 31 chr3 21525685 21526068 -205998510 + L1M4 LINE L1 3625 3961 -2185 2393 78 0 0 chr3 21526068 21526363 -205998215 - AluY SINE Alu -16 295 1 227 287 150 31 chr3 21526363 21526947 -205997631 + L1M4 LINE L1 3961 4707 -1439 349 272 149 0 chr3 21527042 21527237 -205997341 + L1M4 LINE L1 4748 4971 -1175 23 0 0 0 chr3 21527313 21527336 -205997242 + AT_rich Low_complexity Low_complexity 1 23 0 347 304 38 16 chr3 21527521 21527705 -205996873 - L1ME3A LINE L1 -223 5947 5760 574 163 70 47 chr3 21528637 21528766 -205995812 - FLAM_C SINE Alu 0 133 2 597 137 67 27 chr3 21528769 21528942 -205995636 - L1M3 LINE L1 -685 5495 5303 927 197 6 11 chr3 21528944 21529122 -205995456 - AluJb SINE Alu -5 307 131 257 91 0 0 chr3 21529124 21529168 -205995410 - L1M3 LINE L1 -845 5301 5258 1070 195 35 4 chr3 21529189 21529415 -205995163 - L1MC4 LINE L1 -1096 6946 6714 1258 245 26 9 chr3 21529427 21529770 -205994808 - L1MC4 LINE L1 -1927 5881 5533 644 273 72 10 chr3 21529877 21530354 -205994224 - L1ME3A LINE L1 -487 5675 5175 477 247 66 35 chr3 21530368 21530627 -205993951 - L1MC5 LINE L1 -36 7925 7659 1976 149 7 0 chr3 21530917 21531205 -205993373 + AluJo SINE Alu 2 291 -21 761 165 16 0 chr3 21531322 21531443 -205993135 + AluJb SINE Alu 164 286 -26 744 216 114 74 chr3 21532293 21532710 -205991868 + MLT1F1 LTR MaLR 40 475 -92 311 326 4 28 chr3 21532968 21533258 -205991320 + CT-rich Low_complexity Low_complexity 1 282 0 3306 159 51 13 chr3 21535292 21536326 -205988252 - L1PBa LINE L1 -3423 3439 2357 6622 33 0 2 chr3 21536350 21537169 -205987409 - L1PA4 LINE L1 0 6155 5339 * 9344 41 5 9 chr3 21537162 21538893 -205985685 + L1PA4 LINE L1 4205 5923 -232 208 203 17 17 chr3 21539119 21539178 -205985400 + CT-rich Low_complexity Low_complexity 2 60 0 212 295 90 0 chr3 21540516 21540594 -205983984 - MIR SINE MIR -43 219 135 180 327 129 10 chr3 21545182 21545283 -205979295 + MER5B DNA MER1_type 64 176 -2 202 281 148 31 chr3 21545468 21545596 -205978982 - MIR SINE MIR -99 163 21 408 267 84 84 chr3 21546087 21546383 -205978195 + HAL1 LINE L1 42 337 -2170 230 150 183 0 chr3 21546464 21546524 -205978054 + L2 LINE L2 2474 2544 -770 1084 258 183 14 chr3 21546534 21546956 -205977622 + L2 LINE L2 2821 3313 0 3923 100 34 0 chr3 21546993 21547554 -205977024 - LTR19B LTR ERV1 0 580 1 312 229 199 42 chr3 21548444 21548610 -205975968 + L2 LINE L2 3117 3308 -5 253 292 46 0 chr3 21548832 21548897 -205975681 - L2 LINE L2 -8 3305 3238 195 295 104 28 chr3 21549005 21549222 -205975356 - L2 LINE L2 -277 3036 2750 300 325 52 45 chr3 21549707 21549861 -205974717 + MIR3 SINE MIR 51 205 -3 187 267 0 0 chr3 21549878 21549923 -205974655 + L2 LINE L2 3268 3312 -1 * 208 322 23 0 chr3 21549922 21550009 -205974569 - MIR3 SINE MIR -52 156 68 494 327 57 9 chr3 21550166 21550377 -205974201 + MIR SINE MIR 32 252 -10 217 306 16 0 chr3 21550631 21550693 -205973885 + MIR SINE MIR 85 147 -61 26 50 0 0 chr3 21550758 21550798 -205973780 + GC_rich Low_complexity Low_complexity 1 40 0 218 271 82 0 chr3 21552564 21552649 -205971929 - MIR SINE MIR -58 150 59 212 293 152 10 chr3 21552664 21552763 -205971815 + MIR SINE MIR 21 133 -75 192 289 0 0 chr3 21552794 21552832 -205971746 + L2 LINE L2 3254 3291 -22 428 342 19 6 chr3 21553084 21553242 -205971336 - MIR SINE MIR -92 170 11 186 43 0 0 chr3 21553320 21553343 -205971235 + (TG)n Simple_repeat Simple_repeat 2 24 0 245 197 30 15 chr3 21553344 21553410 -205971168 + (TA)n Simple_repeat Simple_repeat 2 68 0 399 235 49 0 chr3 21553705 21553807 -205970771 + MIR SINE MIR 39 145 -117 486 271 187 5 chr3 21554199 21554402 -205970176 - MIR SINE MIR -2 260 21 2155 242 8 49 chr3 21554888 21555484 -205969094 + L1ME2 LINE L1 5559 6130 -34 319 294 55 12 chr3 21555357 21555520 -205969058 + L1MA10 LINE L1 6165 6334 0 * 25 75 0 0 chr3 21555520 21555573 -205969005 + AT_rich Low_complexity Low_complexity 1 53 0 780 271 45 26 chr3 21555913 21556182 -205968396 - MLT1K LTR MaLR -38 550 277 474 212 13 13 chr3 21556182 21556333 -205968245 + CT-rich Low_complexity Low_complexity 2 152 0 386 316 80 16 chr3 21556362 21556549 -205968029 - MLT1K LTR MaLR -306 282 84 861 136 0 0 chr3 21556551 21556676 -205967902 + FLAM_C SINE Alu 1 125 -18 22 0 0 0 chr3 21556683 21556705 -205967873 + AT_rich Low_complexity Low_complexity 1 22 0 200 364 23 0 chr3 21556865 21556953 -205967625 + MIR3 SINE MIR 104 193 -15 414 330 71 9 chr3 21557224 21557436 -205967142 + MIR SINE MIR 18 242 -20 259 324 7 22 chr3 21558034 21558170 -205966408 - MLT1K LTR MaLR -23 565 432 315 176 98 78 chr3 21558285 21558387 -205966191 - MLT1K LTR MaLR -404 184 81 193 182 91 36 chr3 21559421 21559476 -205965102 + MIR SINE MIR 117 174 -88 276 306 6 57 chr3 21560872 21561029 -205963549 - L2 LINE L2 -96 3176 3028 1066 153 16 0 chr3 21562470 21562653 -205961925 - Tigger4(Zombi) DNA MER2_type -3 2728 2543 683 179 8 0 chr3 21562652 21562775 -205961803 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 209 258 86 21 chr3 21564102 21564195 -205960383 + MIR SINE MIR 60 158 -104 180 182 0 0 chr3 21564243 21564276 -205960302 - L2 LINE L2 0 3313 3281 599 229 76 0 chr3 21564336 21564493 -205960085 + MIR SINE MIR 83 251 -11 253 347 41 37 chr3 21564512 21564757 -205959821 - L2 LINE L2 -183 3089 2844 584 311 70 25 chr3 21566973 21567217 -205957361 + MIR SINE MIR 7 261 -1 189 325 75 33 chr3 21567480 21567600 -205956978 + L2 LINE L2 3147 3271 -1 476 253 142 0 chr3 21570445 21570607 -205953971 + MIR SINE MIR 47 231 -31 587 221 39 61 chr3 21570849 21571030 -205953548 + AluJb SINE Alu 136 312 0 5411 194 193 6 chr3 21575243 21576652 -205947926 - L1PBa LINE L1 -5185 1678 6 2220 101 0 3 chr3 21576708 21576994 -205947584 + AluSg SINE Alu 1 285 -25 203 0 0 36 chr3 21576994 21577022 -205947556 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 406 218 65 24 chr3 21577066 21577190 -205947388 - L1 LINE L1 -1527 4619 4491 721 154 0 0 chr3 21577318 21577428 -205947150 + FRAM SINE Alu 49 158 -18 456 310 228 34 chr3 21578321 21578966 -205945612 + L3 LINE CR1 725 1494 -83 1091 231 57 70 chr3 21578988 21579207 -205945371 - L1MC4 LINE L1 0 8042 7822 2116 117 13 17 chr3 21579207 21579507 -205945071 + AluSx SINE Alu 1 299 -13 1091 231 57 70 chr3 21579507 21579745 -205944833 - L1MC4 LINE L1 -220 7822 7591 1259 159 0 87 chr3 21579745 21579785 -205944793 - AluJb SINE Alu 0 312 270 351 0 0 0 chr3 21579785 21579824 -205944754 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1259 159 0 87 chr3 21579824 21580060 -205944518 - AluJb SINE Alu -42 270 60 415 210 216 6 chr3 21580194 21580356 -205944222 - L1MC4a LINE L1 -490 7318 7123 729 172 0 0 chr3 21580632 21581124 -205943454 + (CAG)n Simple_repeat Simple_repeat 1 492 0 324 161 0 0 chr3 21581137 21581218 -205943360 + (CAG)n Simple_repeat Simple_repeat 2 82 0 411 337 12 0 chr3 21581428 21581600 -205942978 + (CCCCAG)n Simple_repeat Simple_repeat 6 179 0 331 283 157 25 chr3 21581892 21582090 -205942488 - L1ME LINE L1 -381 5789 5566 319 240 32 88 chr3 21582622 21582747 -205941831 - L1ME3A LINE L1 -24 6146 6029 198 306 0 0 chr3 21583139 21583188 -205941390 - L2 LINE L2 -77 3195 3147 519 240 25 0 chr3 21583753 21583874 -205940704 + MIR SINE MIR 8 131 -131 2756 104 43 10 chr3 21583882 21584296 -205940282 - MER57B LTR ERV1 -6 428 1 948 111 30 1 chr3 21584296 21584522 -205940056 - MER57B-int LTR ERV1 0 7537 7278 591 198 16 8 chr3 21584524 21584650 -205939928 - LTR54B LTR ERV1 -369 129 3 10986 120 58 3 chr3 21584650 21586394 -205938184 - MER57-int LTR ERV1 -390 7147 5307 372 185 0 0 chr3 21586385 21586450 -205938128 - MER57-int LTR ERV1 -1879 4719 4655 * 34935 46 3 0 chr3 21586450 21590655 -205933923 + L1P LINE L1 1 4217 -1929 236 247 130 13 chr3 21590962 21591039 -205933539 - MER58C DNA MER1_type -57 158 73 190 309 72 52 chr3 21591256 21591450 -205933128 - L2 LINE L2 -90 3182 2985 901 214 132 14 chr3 21591770 21592059 -205932519 + MER33 DNA MER1_type 1 323 -1 499 218 74 50 chr3 21592401 21592603 -205931975 + MIR SINE MIR 8 214 -48 262 257 14 0 chr3 21593863 21593937 -205930641 + MIR SINE MIR 50 124 -138 1487 161 57 0 chr3 21593938 21594186 -205930392 + MER47A DNA MER2_type 1 262 -104 640 78 0 68 chr3 21594188 21594291 -205930287 + L1MB3 LINE L1 5836 5931 -252 486 148 28 74 chr3 21594299 21594407 -205930171 + MER47A DNA MER2_type 264 366 0 3493 162 52 12 chr3 21594733 21594931 -205929647 + L1MB3 LINE L1 5444 5633 -550 216 0 0 0 chr3 21594931 21594955 -205929623 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3493 162 52 12 chr3 21594955 21595448 -205929130 + L1MB3 LINE L1 5633 6163 -20 217 141 77 0 chr3 21595449 21595558 -205929020 + (TA)n Simple_repeat Simple_repeat 1 117 0 201 239 26 53 chr3 21596020 21596133 -205928445 + T-rich Low_complexity Low_complexity 5 114 0 855 121 23 75 chr3 21596155 21596205 -205928373 - L1MB4 LINE L1 -1 6179 6128 2561 41 0 3 chr3 21596205 21596500 -205928078 - AluY SINE Alu -17 294 1 855 121 23 75 chr3 21596500 21596623 -205927955 - L1MB4 LINE L1 -52 6128 6015 205 367 28 0 chr3 21598486 21598595 -205925983 + MIR SINE MIR 136 247 -15 1084 162 66 5 chr3 21599585 21599783 -205924795 + L1MD3 LINE L1 7649 7858 -137 7222 205 51 16 chr3 21600068 21602735 -205921843 + L1MB5 LINE L1 3371 6131 -43 1604 103 0 30 chr3 21602841 21603075 -205921503 + AluSg/x SINE Alu 82 308 -2 195 365 0 0 chr3 21603688 21603751 -205920827 + MIR SINE MIR 171 233 -29 341 288 73 89 chr3 21604048 21604350 -205920228 + L2 LINE L2 2967 3263 -9 198 333 25 0 chr3 21604735 21604816 -205919762 + L2 LINE L2 2128 2210 -1104 411 224 19 28 chr3 21604862 21604969 -205919609 + L1MC5 LINE L1 7705 7810 -151 423 280 126 16 chr3 21605925 21606107 -205918471 - MIR SINE MIR -14 248 47 204 214 0 0 chr3 21606516 21606558 -205918020 + L2 LINE L2 3019 3060 -212 193 245 19 0 chr3 21606907 21606960 -205917618 + MIR SINE MIR 59 112 -150 230 257 14 14 chr3 21607529 21607599 -205916979 - MIR SINE MIR -19 243 174 488 234 35 35 chr3 21607983 21608124 -205916454 + L1MC4 LINE L1 6726 6866 -1176 689 242 130 71 chr3 21608251 21608786 -205915792 + L1MC4 LINE L1 7347 8042 0 349 237 13 112 chr3 21608961 21609113 -205915465 - MIR3 SINE MIR -69 139 3 1773 117 86 0 chr3 21610479 21610736 -205913842 + AluSx SINE Alu 1 279 -33 232 67 0 44 chr3 21610739 21610784 -205913794 + (CGGGA)n Simple_repeat Simple_repeat 3 45 0 191 301 34 55 chr3 21611331 21611477 -205913101 - L2 LINE L2 -306 2966 2824 383 246 66 25 chr3 21611507 21611629 -205912949 + MIR SINE MIR 16 142 -66 23 78 0 0 chr3 21612654 21612705 -205911873 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr3 21612866 21612891 -205911687 + AT_rich Low_complexity Low_complexity 1 25 0 258 304 0 0 chr3 21613532 21613611 -205910967 + L1ME4a LINE L1 5735 5813 -308 373 240 10 20 chr3 21613685 21613785 -205910793 + L1ME4a LINE L1 5959 6057 -64 513 227 93 138 chr3 21613947 21614519 -205910059 + L2 LINE L2 2737 3313 0 191 308 181 8 chr3 21614954 21615087 -205909491 - MIR SINE MIR -54 208 53 180 233 0 0 chr3 21615461 21615504 -205909074 + L2 LINE L2 3271 3313 0 1995 111 59 0 chr3 21615736 21616025 -205908553 + AluSx SINE Alu 1 306 -6 1077 188 8 2 chr3 21616036 21616301 -205908277 - MER2 DNA MER2_type 0 345 32 1115 317 149 5 chr3 21616312 21617032 -205907546 - L2 LINE L2 -228 3044 2225 327 215 94 68 chr3 21618131 21618322 -205906256 - L2 LINE L2 0 3313 3118 588 216 205 24 chr3 21618421 21618675 -205905903 + L2 LINE L2 3014 3313 0 186 250 184 13 chr3 21618805 21618881 -205905697 + L2 LINE L2 3116 3204 -68 2328 104 7 0 chr3 21619197 21619505 -205905073 - AluSx SINE Alu -2 310 1 401 285 106 24 chr3 21619524 21619731 -205904847 - MIR SINE MIR -16 246 23 1145 120 0 63 chr3 21619745 21619936 -205904642 - AluJb SINE Alu 0 312 134 788 160 53 0 chr3 21620243 21620412 -205904166 - MIR SINE MIR -5 257 80 848 129 0 38 chr3 21620990 21621122 -205903456 + FLAM_C SINE Alu 1 127 -16 761 241 93 21 chr3 21621577 21621813 -205902765 - MIR SINE MIR 0 262 10 385 299 74 28 chr3 21623061 21623278 -205901300 + MIR SINE MIR 2 228 -34 2474 175 103 34 chr3 21623296 21623390 -205901188 - Charlie1 DNA MER1_type -70 2691 2605 2781 0 0 10 chr3 21623390 21623688 -205900890 + AluYa5 SINE Alu 1 295 -16 2169 129 0 3 chr3 21623691 21623986 -205900592 + AluSq SINE Alu 1 294 -19 2052 124 0 3 chr3 21623986 21624299 -205900279 + AluSx SINE Alu 1 312 0 2474 175 103 34 chr3 21624299 21624837 -205899741 - Charlie1 DNA MER1_type -156 2605 2009 1769 116 101 0 chr3 21624837 21625104 -205899474 - AluSg SINE Alu -16 294 1 632 276 36 14 chr3 21625159 21625380 -205899198 + MIR SINE MIR 9 234 -28 26 64 0 0 chr3 21625505 21625552 -205899026 + AT_rich Low_complexity Low_complexity 1 47 0 427 205 94 82 chr3 21625669 21625840 -205898738 + MER104 DNA Tc2 8 180 0 754 207 72 16 chr3 21627012 21627205 -205897373 + MER3 DNA MER1_type 2 205 -4 406 281 30 12 chr3 21627569 21627736 -205896842 - L1MC4a LINE L1 -1969 5839 5670 * 5936 66 9 0 chr3 21627726 21628481 -205896097 - L1PA7 LINE L1 -1 6153 5392 184 263 79 26 chr3 21628593 21628669 -205895909 + MIR SINE MIR 45 124 -138 668 196 67 62 chr3 21628721 21628866 -205895712 + MIR SINE MIR 63 211 -51 2037 149 7 0 chr3 21628866 21629168 -205895410 + AluSx SINE Alu 1 304 -8 668 196 67 62 chr3 21629168 21629216 -205895362 + MIR SINE MIR 211 257 -5 2385 85 0 10 chr3 21629241 21629548 -205895030 + AluSx SINE Alu 1 304 -8 231 188 62 0 chr3 21631086 21631166 -205893412 + (TTAA)n Simple_repeat Simple_repeat 4 88 0 8298 57 1 0 chr3 21631621 21632586 -205891992 + LTR5 LTR ERVK 1 966 -3 354 355 39 17 chr3 21632953 21633187 -205891391 - MIR SINE MIR -1 261 23 974 153 0 0 chr3 21633223 21633367 -205891211 + AluJb SINE Alu 157 300 -12 2875 219 95 7 chr3 21634676 21635412 -205889166 - L1M4 LINE L1 -1253 4893 4093 268 232 0 14 chr3 21635407 21635476 -205889102 - L1MEc LINE L1 -6307 89 22 * 1076 167 23 11 chr3 21635618 21635792 -205888786 - AluJo SINE Alu -134 178 3 506 267 73 53 chr3 21635795 21635929 -205888649 - L1M4 LINE L1 -1488 4658 4528 2410 97 49 6 chr3 21635929 21636278 -205888300 + THE1B LTR MaLR 1 364 0 506 267 73 53 chr3 21636278 21636446 -205888132 - L1M4 LINE L1 -1618 4528 4350 251 354 20 14 chr3 21636865 21637012 -205887566 - L2 LINE L2 -191 3081 2934 1567 189 29 0 chr3 21637065 21637377 -205887201 + MER33 DNA MER1_type 1 321 -3 1066 149 0 12 chr3 21637482 21637650 -205886928 + FRAM SINE Alu 1 166 -10 2227 130 0 0 chr3 21637651 21637958 -205886620 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr3 21638046 21638078 -205886500 + AT_rich Low_complexity Low_complexity 1 32 0 1679 174 0 37 chr3 21638574 21638895 -205885683 - AluJb SINE Alu -3 309 1 3350 198 25 14 chr3 21639776 21640416 -205884162 - MER82 DNA MER2_type -6 647 1 1971 151 20 0 chr3 21640759 21641063 -205883515 + AluSx SINE Alu 1 310 -2 240 86 0 0 chr3 21641839 21641874 -205882704 + (TG)n Simple_repeat Simple_repeat 2 36 0 1664 174 14 0 chr3 21642578 21642854 -205881724 - AluJo SINE Alu -32 280 1 338 259 27 9 chr3 21642878 21642990 -205881588 - MIR SINE MIR -18 244 131 3045 91 43 0 chr3 21642990 21643406 -205881172 + MER57B LTR ERV1 1 434 0 4076 141 47 5 chr3 21643406 21644051 -205880527 + MER57B-int LTR ERV1 1 672 -6865 * 6199 171 89 45 chr3 21644048 21646684 -205877894 + MER51-int LTR ERV1 288 4651 -2738 2543 77 0 6 chr3 21646684 21646995 -205877583 + AluSc SINE Alu 1 309 0 6199 171 89 45 chr3 21646995 21647527 -205877051 + MER51-int LTR ERV1 4651 5158 -2231 1463 46 5 36 chr3 21647530 21647724 -205876854 - L1PA4 LINE L1 0 6155 5968 1891 155 7 0 chr3 21647840 21648124 -205876454 - AluSx SINE Alu -26 286 1 453 83 67 0 chr3 21648124 21648201 -205876377 - L1M LINE L1 -822 5324 5252 1214 41 0 0 chr3 21648267 21648412 -205876166 + L1PA4 LINE L1 6010 6154 -1 2331 101 3 0 chr3 21648838 21649134 -205875444 + AluSx SINE Alu 1 297 -15 686 231 17 52 chr3 21649144 21649317 -205875261 + AluJo SINE Alu 2 168 -144 29729 106 16 13 chr3 21649418 21653922 -205870656 - L1P LINE L1 -1032 5114 598 308 315 72 9 chr3 21654055 21654166 -205870412 + L2 LINE L2 3191 3308 -5 234 0 0 0 chr3 21654359 21654385 -205870193 + (T)n Simple_repeat Simple_repeat 1 26 0 1039 237 107 13 chr3 21654675 21654975 -205869603 - MLT1J2 LTR MaLR -122 328 1 21 0 0 0 chr3 21655035 21655056 -205869522 + AT_rich Low_complexity Low_complexity 1 21 0 2444 75 3 16 chr3 21655532 21655838 -205868740 - AluY SINE Alu -9 302 1 326 106 47 4 chr3 21656235 21656317 -205868261 - MER53 DNA DNA -73 116 1 458 249 46 69 chr3 21657069 21657230 -205867348 - MLT1J2 LTR MaLR -40 471 252 602 271 48 5 chr3 21657255 21657443 -205867135 - MLT1J1 LTR MaLR -250 196 1 188 313 0 16 chr3 21658070 21658134 -205866444 - L2 LINE L2 -5 3267 3205 2307 107 7 0 chr3 21658160 21658458 -205866120 + AluSx SINE Alu 1 300 -12 725 179 0 0 chr3 21660437 21660549 -205864029 + FLAM_A SINE Alu 4 115 -18 683 286 112 9 chr3 21660811 21661035 -205863543 - MLT1K LTR MaLR -318 270 24 310 337 53 16 chr3 21662481 21662671 -205861907 - L2 LINE L2 -255 3058 2862 207 324 57 29 chr3 21662704 21662809 -205861769 - MIR3 SINE MIR -54 154 47 194 280 72 40 chr3 21663054 21663179 -205861399 + MIR SINE MIR 24 152 -56 370 254 87 22 chr3 21663711 21663849 -205860729 + MIR SINE MIR 20 166 -96 1127 126 0 18 chr3 21665008 21665216 -205859362 - AluSq SINE Alu 0 326 122 2359 78 0 41 chr3 21665221 21665541 -205859037 - AluSg SINE Alu -2 308 2 1528 127 124 0 chr3 21665543 21665810 -205858768 - AluSp SINE Alu -13 300 1 590 111 40 10 chr3 21666192 21666291 -205858287 - L1MB2 LINE L1 -2 6169 6068 552 283 148 0 chr3 21666593 21666823 -205857755 + L2 LINE L2 2712 2975 -339 271 301 36 0 chr3 21666830 21666913 -205857665 + MER5B DNA MER1_type 19 104 -74 192 97 0 0 chr3 21716975 21717006 -205807572 + (ATG)n Simple_repeat Simple_repeat 3 33 0 457 256 135 88 chr3 21717367 21717877 -205806701 + L2 LINE L2 2727 3267 -5 1068 98 0 0 chr3 21718426 21718569 -205806009 - AluY SINE Alu -4 307 165 466 291 64 7 chr3 21718634 21718775 -205805803 + L2 LINE L2 3122 3270 -2 228 250 11 33 chr3 21718877 21718969 -205805609 + MLT1K LTR MaLR 449 538 -50 446 173 45 116 chr3 21718970 21719147 -205805431 + L1ME2 LINE L1 5669 5831 -333 650 245 15 56 chr3 21719147 21719343 -205805235 + MLT1B LTR MaLR 1 188 -186 202 200 0 0 chr3 21719344 21719379 -205805199 + C-rich Low_complexity Low_complexity 2 36 0 876 226 20 5 chr3 21719390 21719589 -205804989 + MLT1B LTR MaLR 189 390 0 1346 93 21 10 chr3 21719687 21719735 -205804843 - MER107 DNA MER1_type -1 196 150 237 65 0 0 chr3 21719735 21719766 -205804812 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1346 93 21 10 chr3 21719766 21719911 -205804667 - MER107 DNA MER1_type -47 150 1 1910 318 78 36 chr3 21719919 21720585 -205803993 - LTR8A LTR ERV1 0 727 34 620 261 40 22 chr3 21720591 21720616 -205803962 + L1ME2 LINE L1 5927 5950 -214 2463 53 0 0 chr3 21720616 21720923 -205803655 + AluY SINE Alu 1 307 0 620 261 40 22 chr3 21720923 21721122 -205803456 + L1ME2 LINE L1 5950 6156 -8 493 290 12 0 chr3 21721367 21721529 -205803049 + GA-rich Low_complexity Low_complexity 2 165 0 321 259 0 0 chr3 21722995 21723076 -205801502 + MIR SINE MIR 55 135 -127 221 221 10 0 chr3 21723504 21723608 -205800970 + (TG)n Simple_repeat Simple_repeat 2 106 0 299 126 35 11 chr3 21723788 21723875 -205800703 + (TG)n Simple_repeat Simple_repeat 2 90 0 210 277 12 0 chr3 21723894 21723977 -205800601 + (TG)n Simple_repeat Simple_repeat 2 85 0 2537 244 170 5 chr3 21724112 21724948 -205799630 - L1MDa LINE L1 -5341 1199 226 831 92 9 0 chr3 21725278 21725387 -205799191 + FRAM SINE Alu 50 159 -17 211 292 28 0 chr3 21725663 21725735 -205798843 - L2 LINE L2 -291 2981 2908 2051 172 7 63 chr3 21725853 21726265 -205798313 - MLT1B LTR MaLR -1 389 1 207 337 109 11 chr3 21726271 21726446 -205798132 - L2 LINE L2 -579 2735 2544 340 206 76 0 chr3 21726626 21726718 -205797860 + L1MDa LINE L1 1646 1744 -4796 285 300 3 10 chr3 21726801 21726934 -205797644 - L1P LINE L1 -2471 3675 3543 2887 182 30 17 chr3 21726992 21727591 -205796987 - L1ME1 LINE L1 -93 6073 5467 209 284 136 12 chr3 21728404 21728485 -205796093 - MIR SINE MIR -102 106 16 247 186 0 68 chr3 21728758 21728817 -205795761 - L2 LINE L2 -2 3270 3216 301 280 42 51 chr3 21728872 21728990 -205795588 + MIR SINE MIR 135 251 -11 423 278 161 22 chr3 21729080 21729260 -205795318 + MIR SINE MIR 2 206 -56 410 297 11 0 chr3 21729450 21729625 -205794953 + (TG)n Simple_repeat Simple_repeat 2 178 0 261 0 0 0 chr3 21729652 21729681 -205794897 + (TG)n Simple_repeat Simple_repeat 1 29 0 197 250 0 0 chr3 21729713 21729753 -205794825 + MIR SINE MIR 222 261 -1 1297 226 83 92 chr3 21729787 21730450 -205794128 - L1ME3 LINE L1 0 6162 5506 628 294 78 36 chr3 21730462 21730819 -205793759 - LTR16A LTR ERVL -3 447 76 559 224 59 46 chr3 21730847 21731008 -205793570 - L1ME3 LINE L1 -694 5470 5299 1828 167 3 22 chr3 21731008 21731319 -205793259 - AluJb SINE Alu -7 305 1 559 224 59 46 chr3 21731319 21731412 -205793166 - L1ME3 LINE L1 -865 5299 5209 2353 286 62 26 chr3 21731417 21732429 -205792149 - L1ME3 LINE L1 -1052 5094 4035 180 0 0 0 chr3 21732429 21732449 -205792129 + (TG)n Simple_repeat Simple_repeat 1 20 0 2353 286 62 26 chr3 21732449 21732589 -205791989 - L1ME3 LINE L1 -2111 4035 3901 1176 264 82 9 chr3 21733559 21733900 -205790678 - MLT1K LTR MaLR -8 580 215 635 285 131 23 chr3 21734328 21734873 -205789705 - L2 LINE L2 -236 3036 2388 281 267 103 27 chr3 21734954 21735100 -205789478 - L1ME4a LINE L1 -232 5889 5733 703 146 18 0 chr3 21736724 21736834 -205787744 - AluJb SINE Alu -11 301 190 3899 132 37 55 chr3 21736837 21737562 -205787016 - MER50 LTR ERV1 -22 712 1 806 154 19 39 chr3 21737562 21737718 -205786860 - AluJb SINE Alu -122 190 38 268 256 78 56 chr3 21737718 21737808 -205786770 + L2 LINE L2 2995 3086 -186 2474 104 109 3 chr3 21738091 21738477 -205786101 + MSTA LTR MaLR 2 428 0 867 239 132 31 chr3 21738729 21739182 -205785396 + MLT1G1 LTR MaLR 10 595 0 281 252 48 48 chr3 21739330 21739433 -205785145 + L1ME LINE L1 5541 5643 -521 1499 208 17 7 chr3 21739889 21740178 -205784400 + AluJo SINE Alu 9 300 -12 242 289 0 78 chr3 21740850 21740940 -205783638 - MIR3 SINE MIR -44 164 82 200 286 36 36 chr3 21741357 21741441 -205783137 - MIR SINE MIR -71 191 108 524 293 62 5 chr3 21741522 21741785 -205782793 - L1ME3A LINE L1 -168 6002 5724 380 233 118 21 chr3 21742206 21742394 -205782184 + MIR SINE MIR 27 243 -19 333 0 0 0 chr3 21742510 21742547 -205782031 + (TG)n Simple_repeat Simple_repeat 2 38 0 2192 150 40 6 chr3 21742739 21743092 -205781486 + MLT1A1 LTR MaLR 1 365 0 3738 219 51 47 chr3 21743377 21744540 -205780038 - L1MD2 LINE L1 -12 6347 5170 1893 149 7 7 chr3 21744540 21744835 -205779743 - AluJo SINE Alu -17 295 1 3738 219 51 47 chr3 21744835 21744885 -205779693 - L1MD2 LINE L1 -1189 5170 5122 370 310 223 13 chr3 21744895 21745285 -205779293 - L1MC4a LINE L1 -1918 5890 5419 2059 110 13 41 chr3 21745308 21745491 -205779087 - AluSx SINE Alu -3 309 137 2250 109 3 10 chr3 21745491 21745802 -205778776 - AluSc SINE Alu 0 309 1 2059 110 13 41 chr3 21745802 21745935 -205778643 - AluSx SINE Alu -175 137 2 335 215 15 0 chr3 21746161 21746226 -205778352 + MIR SINE MIR 119 184 -78 442 138 0 0 chr3 21746235 21746300 -205778278 - AluJb SINE Alu -23 289 225 3024 55 23 39 chr3 21746300 21746738 -205777840 - LTR7 LTR ERV1 -19 431 1 1341 161 4 48 chr3 21746742 21746791 -205777787 - AluJb SINE Alu -75 237 187 5491 167 15 68 chr3 21746791 21747815 -205776763 + LTR5 LTR ERVK 1 969 0 1341 161 4 48 chr3 21747815 21748013 -205776565 - AluJb SINE Alu -125 187 1 250 167 19 37 chr3 21748024 21748078 -205776500 + MIR SINE MIR 189 241 -21 2995 138 34 19 chr3 21748348 21748819 -205775759 - MER66A LTR ERV1 0 478 1 852 262 87 0 chr3 21749149 21749355 -205775223 + MIR SINE MIR 20 243 -19 289 289 22 0 chr3 21749404 21749494 -205775084 + L2 LINE L2 2931 3022 -250 370 305 51 0 chr3 21749584 21749702 -205774876 + MIR3 SINE MIR 9 132 -76 448 189 101 162 chr3 21750174 21750502 -205774076 - MLT1K LTR MaLR -74 514 207 1841 109 40 4 chr3 21750986 21751262 -205773316 - L1PB3 LINE L1 -2 6152 5867 370 312 79 37 chr3 21751276 21751465 -205773113 - MIR SINE MIR -5 257 61 351 270 20 0 chr3 21752024 21752124 -205772454 - MIR SINE MIR -65 143 42 891 138 0 0 chr3 21752237 21752360 -205772218 - FLAM_C SINE Alu -20 123 1 191 224 119 45 chr3 21752634 21752701 -205771877 + L3 LINE CR1 1370 1441 -136 418 222 16 48 chr3 21752795 21752921 -205771657 + MER5A DNA MER1_type 44 165 -24 377 301 68 8 chr3 21753786 21753919 -205770659 - MIR3 SINE MIR -31 177 37 278 256 33 0 chr3 21754015 21754105 -205770473 - MER117 DNA MER1_type -104 93 1 343 235 20 31 chr3 21754472 21754570 -205770008 + MIR SINE MIR 14 110 -152 499 264 93 16 chr3 21754640 21754822 -205769756 - MLT1L LTR MaLR 0 615 420 2367 143 133 11 chr3 21754928 21755370 -205769208 + MLT2B3 LTR ERVL 1 496 -58 313 200 36 91 chr3 21755365 21755475 -205769103 + MLT1H LTR MaLR 446 549 0 * 2514 152 36 10 chr3 21755554 21755969 -205768609 + MSTB LTR MaLR 1 426 0 442 277 8 8 chr3 21756293 21756423 -205768155 + LTR67 LTR ERVL 428 557 0 597 260 91 0 chr3 21756429 21756583 -205767995 + MIR SINE MIR 93 260 -2 186 43 0 0 chr3 21756730 21756753 -205767825 + (ATG)n Simple_repeat Simple_repeat 3 25 0 195 69 0 0 chr3 21756787 21756816 -205767762 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 273 273 13 13 chr3 21756819 21756896 -205767682 - MIR SINE MIR -35 227 151 772 145 28 35 chr3 21756960 21757105 -205767473 + MLT2B3 LTR ERVL 137 280 -274 501 269 17 8 chr3 21757111 21757230 -205767348 - MIR SINE MIR -118 144 25 251 370 0 0 chr3 21757736 21757828 -205766750 - MIR SINE MIR -72 136 45 21 36 0 0 chr3 21757919 21757947 -205766631 + AT_rich Low_complexity Low_complexity 1 28 0 4606 218 78 43 chr3 21758064 21761928 -205762650 - L1M4 LINE L1 -2598 4046 10 561 263 6 29 chr3 21762707 21762878 -205761700 + LTR16C LTR ERVL 36 202 -289 509 242 73 0 chr3 21762936 21763101 -205761477 + LTR16C LTR ERVL 313 489 -2 2174 167 27 15 chr3 21763353 21763760 -205760818 + LTR3 LTR ERVK 5 416 -16 4541 114 36 15 chr3 21763785 21764515 -205760063 + HERVK3 LTR ERVK 30 774 -6469 9101 114 11 5 chr3 21764521 21765901 -205758677 + HERVK3 LTR ERVK 1358 2745 -4498 3592 131 2 7 chr3 21765889 21766455 -205758123 + HERVK3 LTR ERVK 3745 4307 -2936 * 4020 130 21 0 chr3 21766454 21767114 -205757464 + HERVK3 LTR ERVK 4685 5358 -1885 * 7048 101 0 1 chr3 21767109 21768090 -205756488 + HERVK3 LTR ERVK 6264 7243 0 2112 175 49 15 chr3 21768094 21768505 -205756073 + LTR3 LTR ERVK 5 429 -3 257 154 0 0 chr3 21768515 21768554 -205756024 + HERVK3 LTR ERVK 2 40 -7203 241 384 10 10 chr3 21768560 21768659 -205755919 + L2 LINE L2 2961 3059 -213 2733 273 138 24 chr3 21768966 21770402 -205754176 + L2 LINE L2 1710 3308 -5 291 272 272 0 chr3 21770646 21770771 -205753807 + MIR3 SINE MIR 42 200 -8 309 317 49 0 chr3 21771253 21771376 -205753202 + L3 LINE CR1 1376 1504 -73 1935 141 3 7 chr3 21771391 21771789 -205752789 + AluSx SINE Alu 1 397 0 180 321 38 0 chr3 21771800 21771853 -205752725 + L2 LINE L2 3170 3224 -48 423 359 39 9 chr3 21773038 21773269 -205751309 - L2 LINE L2 -459 2855 2618 818 252 172 54 chr3 21773289 21773807 -205750771 - L2 LINE L2 0 3313 2715 1280 173 13 18 chr3 21773807 21774032 -205750546 + MER58A DNA MER1_type 1 224 0 818 252 172 54 chr3 21774032 21774077 -205750501 - L2 LINE L2 -598 2715 2677 373 301 49 0 chr3 21774855 21774978 -205749600 - L2 LINE L2 -9 3304 3176 185 260 20 20 chr3 21775090 21775140 -205749438 - MIR SINE MIR -184 78 29 258 265 0 29 chr3 21775160 21775228 -205749350 + L3 LINE CR1 1315 1380 -197 1090 286 10 13 chr3 21775280 21775584 -205748994 - MLT1K LTR MaLR -116 472 170 247 294 135 24 chr3 21775736 21775862 -205748716 + MIR SINE MIR 49 188 -74 947 233 72 4 chr3 21776164 21776426 -205748152 + MLT2C1 LTR ERVL 118 397 0 506 252 97 53 chr3 21776427 21776566 -205748012 + ERVL-C1 LTR ERVL 2 154 -5610 2209 155 9 6 chr3 21776566 21776902 -205747676 - MER1B DNA MER1_type 0 337 1 506 252 97 53 chr3 21776902 21776968 -205747610 + ERVL-C1 LTR ERVL 154 216 -5548 3068 170 97 2 chr3 21776970 21777576 -205747002 + ERVL-C1 LTR ERVL 5093 5756 -8 1208 221 39 66 chr3 21777576 21777983 -205746595 + MLT2C1 LTR ERVL 1 396 -1 4184 235 55 21 chr3 21777984 21779310 -205745268 - L1MDa LINE L1 -2536 4004 2606 2200 60 45 0 chr3 21779310 21779607 -205744971 - AluY SINE Alu 0 309 1 4184 235 55 21 chr3 21779607 21779768 -205744810 - L1MDa LINE L1 -3934 2606 2452 304 28 0 0 chr3 21780702 21780738 -205743840 + MER4A LTR ERV1 554 589 -75 2133 113 10 0 chr3 21781940 21782233 -205742345 - AluSx SINE Alu -16 296 1 386 239 215 23 chr3 21783313 21783443 -205741135 + MIR SINE MIR 3 157 -105 505 236 90 28 chr3 21783454 21783632 -205740946 - MER117 DNA MER1_type -6 191 3 189 222 0 0 chr3 21783648 21783684 -205740894 + L2 LINE L2 3217 3252 -20 * 508 264 135 7 chr3 21783680 21783828 -205740750 - L3 LINE CR1 -36 1541 1375 249 83 0 0 chr3 21784047 21784083 -205740495 + (TG)n Simple_repeat Simple_repeat 2 37 0 368 281 73 0 chr3 21784946 21785042 -205739536 + MER91B DNA MER1_type 85 187 -3 829 271 146 10 chr3 21785513 21785947 -205738631 + L2 LINE L2 2754 3254 -59 195 300 50 0 chr3 21786341 21786401 -205738177 + L3 LINE CR1 1416 1478 -99 9076 122 21 18 chr3 21786645 21787399 -205737179 + Tigger1 DNA MER2_type 1 765 -1653 2172 113 3 0 chr3 21787399 21787715 -205736863 - AluSx SINE Alu 0 317 1 9076 122 21 18 chr3 21787715 21788436 -205736142 + Tigger1 DNA MER2_type 765 1482 -936 6161 93 148 133 chr3 21788436 21790109 -205734469 + pTR5 LTR ERV1 743 2438 0 5289 112 20 75 chr3 21790112 21790691 -205733887 + Tigger1 DNA MER2_type 1479 1982 -436 2242 120 3 0 chr3 21790691 21790992 -205733586 - AluSc SINE Alu -6 303 2 5289 112 20 75 chr3 21790992 21791407 -205733171 + Tigger1 DNA MER2_type 1982 2418 0 335 219 133 19 chr3 21791407 21791512 -205733066 - MIR SINE MIR -30 232 116 2524 229 122 82 chr3 21791512 21792322 -205732256 + MER69B DNA AcHobo 1 871 -1655 351 44 0 0 chr3 21792322 21792367 -205732211 + (TG)n Simple_repeat Simple_repeat 2 46 0 2524 229 122 82 chr3 21792367 21792698 -205731880 + MER69B DNA AcHobo 871 1187 -39 182 258 74 61 chr3 21792845 21793008 -205731570 - L2 LINE L2 -681 2633 2469 361 281 148 0 chr3 21793589 21793717 -205730861 - MIR SINE MIR 0 262 116 389 262 136 22 chr3 21793801 21794027 -205730551 - MIR SINE MIR -15 247 7 987 204 38 8 chr3 21795195 21795435 -205729143 - L1MC1 LINE L1 -83 6250 6004 528 266 35 55 chr3 21795647 21795700 -205728878 - MIR SINE MIR -6 256 203 1762 149 28 14 chr3 21795700 21795989 -205728589 - AluJo SINE Alu -16 296 4 528 266 35 55 chr3 21795989 21796134 -205728444 - MIR SINE MIR -59 203 62 333 271 52 0 chr3 21796578 21796674 -205727904 - MER91C DNA MER1_type -2 138 38 247 312 46 28 chr3 21796706 21796815 -205727763 - MIR SINE MIR -63 145 35 284 346 44 6 chr3 21797143 21797325 -205727253 - L1MC1 LINE L1 -1983 5825 5637 861 280 111 29 chr3 21797919 21798362 -205726216 - L2 LINE L2 -5 3308 2830 216 282 209 0 chr3 21799277 21799387 -205725191 + L2 LINE L2 3138 3270 -2 212 315 67 0 chr3 21799538 21799627 -205724951 - MIR SINE MIR -147 115 21 324 313 9 9 chr3 21800308 21800420 -205724158 + MIR SINE MIR 80 191 -71 2001 140 10 16 chr3 21800488 21800796 -205723782 - AluJo SINE Alu -6 306 1 646 278 11 0 chr3 21800929 21801109 -205723469 - L1MC1 LINE L1 -912 5234 5053 248 247 80 12 chr3 21801270 21801397 -205723181 + L1ME3 LINE L1 5791 5933 -233 292 167 106 0 chr3 21801450 21801516 -205723062 + L1ME3 LINE L1 6024 6096 -66 1409 240 66 33 chr3 21801678 21802165 -205722413 + MER90 LTR ERV1 1 503 -72 494 226 76 45 chr3 21802201 21802541 -205722037 + LTR23 LTR ERV1 4 378 -59 319 286 108 31 chr3 21803508 21803795 -205720783 + L2 LINE L2 2007 2315 -999 263 262 81 7 chr3 21803869 21804018 -205720560 - LTR16A1 LTR ERVL -89 368 209 184 350 0 52 chr3 21804270 21804367 -205720211 - L2 LINE L2 -62 3210 3119 180 313 45 0 chr3 21804514 21804626 -205719952 - L2 LINE L2 -265 3007 2891 963 254 29 32 chr3 21804659 21804919 -205719659 + MER113 DNA MER1_type? 53 313 -208 5168 126 51 5 chr3 21804919 21805675 -205718903 + L1MC1 LINE L1 5450 6250 -83 2691 129 19 2 chr3 21805675 21806094 -205718484 - MSTA LTR MaLR -2 426 1 5168 126 51 5 chr3 21806094 21806181 -205718397 + L1MC1 LINE L1 6250 6332 -1 963 254 29 32 chr3 21806181 21806235 -205718343 + MER113 DNA MER1_type? 313 366 -155 901 95 0 0 chr3 21806486 21806612 -205717966 + L1MC/D LINE L1 5540 5665 -668 398 211 9 0 chr3 21807004 21807113 -205717465 + CT-rich Low_complexity Low_complexity 2 111 0 653 203 0 7 chr3 21807223 21807376 -205717202 + CT-rich Low_complexity Low_complexity 4 155 0 914 270 146 33 chr3 21807578 21808118 -205716460 - L2 LINE L2 -680 2634 2034 275 49 24 0 chr3 21808498 21808539 -205716039 + (CA)n Simple_repeat Simple_repeat 2 43 0 228 224 0 53 chr3 21809035 21809111 -205715467 + L2 LINE L2 2916 2987 -285 441 294 40 0 chr3 21809145 21809271 -205715307 - MER94 DNA DNA -1 133 3 243 114 68 0 chr3 21809282 21809326 -205715252 + L2 LINE L2 3016 3062 -210 1412 222 74 15 chr3 21809472 21809877 -205714701 + MLT1C LTR MaLR 34 462 -5 866 180 40 31 chr3 21809894 21810116 -205714462 - L1MB8 LINE L1 0 6178 5955 1140 247 119 11 chr3 21810118 21810611 -205713967 + LTR48B LTR ERV1 5 585 -59 329 167 0 0 chr3 21810663 21810717 -205713861 + LTR49 LTR ERV1 542 595 0 1930 147 0 0 chr3 21810717 21811031 -205713547 - L1MB8 LINE L1 -218 5960 5647 1653 144 41 0 chr3 21811372 21811643 -205712935 - AluJo SINE Alu -10 302 21 446 323 56 5 chr3 21813160 21813355 -205711223 - MIR SINE MIR -8 254 50 198 203 6 13 chr3 21813425 21813493 -205711085 - L2 LINE L2 -309 3004 2938 * 224 167 21 21 chr3 21813484 21813532 -205711046 + MIR SINE MIR 96 143 -65 231 302 0 31 chr3 21814191 21814287 -205710291 - L2 LINE L2 -215 3057 2965 468 283 17 0 chr3 21814298 21814444 -205710134 + MIR SINE MIR 14 166 -42 809 220 70 5 chr3 21814457 21814643 -205709935 - MER63A DNA MER1_type -10 200 3 353 364 6 6 chr3 21815081 21815243 -205709335 - L2 LINE L2 -528 2786 2625 1571 217 65 5 chr3 21815301 21815670 -205708908 + MLT1J2 LTR MaLR 38 428 -22 707 133 0 0 chr3 21816244 21816349 -205708229 + FLAM_A SINE Alu 25 129 -13 499 211 102 0 chr3 21816378 21816506 -205708072 - MIR SINE MIR -13 249 109 1815 162 0 14 chr3 21817184 21817468 -205707110 + AluJo SINE Alu 1 280 -32 729 0 0 0 chr3 21817468 21817549 -205707029 + (TAAAA)n Simple_repeat Simple_repeat 1 81 0 337 341 51 11 chr3 21817586 21817762 -205706816 + MLT1L LTR MaLR 212 394 -221 332 239 77 34 chr3 21818024 21818141 -205706437 - MLT1K LTR MaLR -300 288 167 227 215 108 15 chr3 21818121 21818186 -205706392 - MLT1K LTR MaLR -333 255 185 * 187 282 154 0 chr3 21818484 21818601 -205705977 + MIR3 SINE MIR 45 179 -29 351 255 177 21 chr3 21818611 21818803 -205705775 + MIR SINE MIR 28 249 -13 384 249 64 20 chr3 21819512 21819666 -205704912 - MIR SINE MIR -61 147 14 592 320 121 0 chr3 21819770 21820051 -205704527 + L2 LINE L2 2956 3270 -2 226 239 0 0 chr3 21820933 21820979 -205703599 - L3 LINE CR1 -640 937 892 274 281 47 31 chr3 21821066 21821194 -205703384 + L2 LINE L2 3119 3248 -24 1250 145 16 57 chr3 21821332 21821580 -205702998 - AluJo SINE Alu -74 238 1 2264 238 46 75 chr3 21821580 21821908 -205702670 + L1ME2 LINE L1 4891 5227 -937 330 26 0 0 chr3 21821908 21821947 -205702631 + (TG)n Simple_repeat Simple_repeat 2 40 0 2264 238 46 75 chr3 21821947 21822012 -205702566 + L1ME2 LINE L1 5227 5292 -872 2339 110 0 0 chr3 21822012 21822320 -205702258 + AluSx SINE Alu 1 308 -4 2264 238 46 75 chr3 21822320 21823030 -205701548 + L1ME2 LINE L1 5292 5967 -197 1916 114 3 42 chr3 21823030 21823345 -205701233 + AluSx SINE Alu 5 308 0 2264 238 46 75 chr3 21823345 21823507 -205701071 + L1ME2 LINE L1 5967 6132 -32 2015 160 0 3 chr3 21823543 21823850 -205700728 - AluJb SINE Alu -6 306 1 37 69 0 0 chr3 21823850 21823922 -205700656 + AT_rich Low_complexity Low_complexity 1 72 0 728 277 141 44 chr3 21824093 21824178 -205700400 - L1ME3 LINE L1 -218 5944 5869 231 114 0 0 chr3 21824178 21824213 -205700365 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 728 277 141 44 chr3 21824213 21824560 -205700018 - L1ME3 LINE L1 -293 5869 5470 576 265 80 26 chr3 21824573 21824837 -205699741 - MER102a DNA MER1_type -1 329 52 794 158 0 0 chr3 21824837 21824970 -205699608 + FLAM_A SINE Alu 1 133 0 1989 156 0 9 chr3 21825382 21825697 -205698881 - AluJb SINE Alu 0 312 1 263 225 42 14 chr3 21825697 21825768 -205698810 + L2 LINE L2 2687 2759 -555 317 365 57 30 chr3 21825823 21826229 -205698349 + L2 LINE L2 2883 3299 -14 222 316 72 36 chr3 21826236 21826375 -205698203 - L2 LINE L2 -27 3245 3102 192 244 139 23 chr3 21826550 21826636 -205697942 + MIR SINE MIR 5 100 -162 3835 153 70 9 chr3 21826707 21827406 -205697172 - Tigger3(Golem) DNA MER2_type -4 3025 2284 497 262 9 0 chr3 21827406 21827513 -205697065 - Tigger3(Golem) DNA MER2_type -2921 108 1 614 238 13 7 chr3 21827514 21827600 -205696978 - MIR SINE MIR -24 238 149 1793 175 0 38 chr3 21827600 21827920 -205696658 - AluJb SINE Alu -2 310 3 614 238 13 7 chr3 21827920 21827984 -205696594 - MIR SINE MIR -113 149 87 227 204 0 0 chr3 21828627 21828643 -205695935 - L2 LINE L2 -1 3312 3264 233 91 0 0 chr3 21828643 21828676 -205695902 - MIR SINE MIR -11 251 219 252 284 84 0 chr3 21828758 21828853 -205695725 + MIR SINE MIR 14 116 -146 239 320 39 0 chr3 21828902 21829005 -205695573 + L2 LINE L2 3004 3110 -162 421 291 64 41 chr3 21829018 21829190 -205695388 - MIR3 SINE MIR -16 192 17 420 285 15 15 chr3 21829207 21829356 -205695222 + MIR SINE MIR 3 150 -58 634 227 68 17 chr3 21829471 21829647 -205694931 + MIR SINE MIR 60 244 -18 267 176 59 12 chr3 21829841 21829926 -205694652 + Charlie7 DNA MER1_type 2450 2538 -74 274 331 84 7 chr3 21830021 21830163 -205694415 - MIR SINE MIR -35 227 75 483 170 0 0 chr3 21830273 21830373 -205694205 + (CA)n Simple_repeat Simple_repeat 2 101 0 228 317 20 20 chr3 21830963 21831064 -205693514 - MIR SINE MIR -62 146 46 259 319 74 7 chr3 21831338 21831473 -205693105 + MIR SINE MIR 16 159 -103 206 226 16 32 chr3 21831746 21831808 -205692770 + MIR SINE MIR 181 241 -21 2158 276 57 7 chr3 21832283 21832990 -205691588 - L1ME3A LINE L1 -5 6165 5424 386 195 153 34 chr3 21833082 21833200 -205691378 - MIR SINE MIR -57 205 74 507 263 131 0 chr3 21833450 21833625 -205690953 - MIR SINE MIR -16 246 49 2962 160 19 14 chr3 21833782 21834370 -205690208 + L1MB7 LINE L1 5592 6182 -2 290 228 0 0 chr3 21834637 21834694 -205689884 - L2 LINE L2 -1 3271 3215 326 260 14 0 chr3 21834797 21834870 -205689708 - L2 LINE L2 -2 3311 3238 582 318 103 9 chr3 21834879 21835102 -205689476 + MIR SINE MIR 18 261 -1 646 211 62 37 chr3 21835325 21835486 -205689092 - FRAM SINE Alu 0 166 2 458 270 46 12 chr3 21835711 21835879 -205688699 - MIR SINE MIR -54 208 33 184 288 51 0 chr3 21836000 21836059 -205688519 + MIR SINE MIR 85 146 -62 640 211 26 37 chr3 21836323 21836513 -205688065 + MER53 DNA DNA 2 189 0 1823 253 111 93 chr3 21837189 21837258 -205687320 - MER45C DNA AcHobo -628 953 887 1936 163 30 0 chr3 21837258 21837559 -205687019 - AluJb SINE Alu -2 310 1 1823 253 111 93 chr3 21837559 21838278 -205686300 - MER45C DNA AcHobo -694 887 182 2135 110 3 0 chr3 21838278 21838560 -205686018 + AluY SINE Alu 1 283 -28 273 98 0 0 chr3 21838560 21838601 -205685977 + (CA)n Simple_repeat Simple_repeat 2 42 0 1753 192 10 0 chr3 21838607 21838899 -205685679 + AluJb SINE Alu 1 295 -17 1823 253 111 93 chr3 21838899 21838990 -205685588 - MER45C DNA AcHobo -1403 178 49 274 273 11 0 chr3 21839025 21839113 -205685465 + L2 LINE L2 2914 3002 -270 214 325 25 69 chr3 21839209 21839369 -205685209 + L2 LINE L2 3158 3310 -3 * 240 309 211 25 chr3 21839359 21839676 -205684902 - L2 LINE L2 -339 2975 2600 230 327 119 0 chr3 21840458 21840559 -205684019 - L2 LINE L2 -19 3253 3141 272 255 210 25 chr3 21840745 21840902 -205683676 - MER5A DNA MER1_type 0 189 4 418 294 9 0 chr3 21841919 21842028 -205682550 + MER81 DNA DNA 2 111 -3 296 264 107 44 chr3 21842289 21842448 -205682130 + MIR3 SINE MIR 3 171 -37 577 200 73 0 chr3 21842648 21842798 -205681780 - L2 LINE L2 -253 3060 2900 204 158 0 0 chr3 21843192 21843230 -205681348 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1713 183 14 3 chr3 21843734 21844029 -205680549 + AluJb SINE Alu 3 300 -12 2948 140 21 29 chr3 21844029 21844544 -205680034 + L1MB3 LINE L1 5666 6176 -7 1497 276 90 21 chr3 21844560 21845294 -205679284 + L1ME1 LINE L1 5338 6128 -38 2056 149 41 39 chr3 21845294 21845683 -205678895 + MLT1B LTR MaLR 1 390 0 1497 276 90 21 chr3 21845683 21845721 -205678857 + L1ME1 LINE L1 6128 6162 -4 2132 90 7 3 chr3 21845735 21846024 -205678554 - AluSg SINE Alu -20 290 1 280 286 20 0 chr3 21846331 21846433 -205678145 - MIR SINE MIR -62 146 69 277 373 81 0 chr3 21846912 21847097 -205677481 + L2 LINE L2 3024 3223 -49 303 317 14 0 chr3 21847124 21847243 -205677335 + MIR SINE MIR 23 146 -62 623 268 89 0 chr3 21847501 21847658 -205676920 - MIR SINE MIR -2 260 90 197 278 14 0 chr3 21847674 21847746 -205676832 - L2 LINE L2 -303 2969 2897 1642 125 23 4 chr3 21848470 21848653 -205675925 - AluSx SINE Alu 0 316 124 441 0 0 0 chr3 21848653 21848702 -205675876 + (TG)n Simple_repeat Simple_repeat 2 50 0 1642 125 23 4 chr3 21848702 21848807 -205675771 - AluSx SINE Alu -192 124 23 344 305 34 17 chr3 21849414 21849532 -205675046 - MIR SINE MIR -110 152 33 1774 128 62 24 chr3 21850054 21850342 -205674236 + AluSx SINE Alu 1 299 -13 373 271 42 0 chr3 21850505 21850601 -205673977 + MIR SINE MIR 44 143 -119 1803 175 0 13 chr3 21850900 21850916 -205673662 - AluJo SINE Alu -8 304 289 243 0 0 0 chr3 21850916 21850943 -205673635 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1803 175 0 13 chr3 21850943 21851234 -205673344 - AluJo SINE Alu -23 289 1 457 353 45 18 chr3 21851493 21851714 -205672864 - MIR SINE MIR -16 246 20 306 143 95 0 chr3 21852041 21852104 -205672474 - MIR3 SINE MIR -26 182 114 2533 40 0 0 chr3 21852310 21852608 -205671970 + AluY SINE Alu 1 298 -13 214 364 16 8 chr3 21853262 21853383 -205671195 + (CTAGGG)n Simple_repeat Simple_repeat 2 123 0 2039 110 0 21 chr3 21853403 21853724 -205670854 - AluSx SINE Alu 0 315 1 232 266 178 47 chr3 21854532 21854701 -205669877 - MIR3 SINE MIR -11 197 7 488 329 0 0 chr3 21855019 21855156 -205669422 - MIR SINE MIR -89 173 37 185 321 0 0 chr3 21855450 21855506 -205669072 + L3 LINE CR1 1400 1455 -122 216 380 75 29 chr3 21856260 21856607 -205667971 - L2 LINE L2 -337 2977 2615 313 261 123 31 chr3 21856708 21856838 -205667740 - MIR3 SINE MIR -62 146 5 300 314 78 10 chr3 21857167 21857269 -205667309 + L2 LINE L2 3205 3313 0 358 290 73 8 chr3 21857296 21857420 -205667158 + MIR SINE MIR 8 139 -123 1090 268 28 0 chr3 21857473 21857727 -205666851 + MIR SINE MIR 1 261 -1 2238 93 3 6 chr3 21858118 21858429 -205666149 - AluY SINE Alu -1 310 1 444 279 22 7 chr3 21858592 21858728 -205665850 - MIR SINE MIR -111 151 14 327 256 12 0 chr3 21858731 21858813 -205665765 - MER5B DNA MER1_type -7 171 89 256 300 0 0 chr3 21859096 21859166 -205665412 - MIR SINE MIR -58 150 81 511 274 41 7 chr3 21859989 21860135 -205664443 + MIR SINE MIR 52 202 -60 315 321 102 27 chr3 21860459 21860869 -205663709 + L2 LINE L2 2560 3017 -255 822 253 154 7 chr3 21860872 21861157 -205663421 - MLT1G1 LTR MaLR -267 328 2 294 362 21 0 chr3 21862216 21862310 -205662268 - L2 LINE L2 -9 3263 3168 304 275 64 18 chr3 21862348 21862457 -205662121 - L2 LINE L2 -233 3039 2926 649 292 108 20 chr3 21862651 21863278 -205661300 - L2 LINE L2 -171 3142 2462 219 69 0 0 chr3 21863284 21863313 -205661265 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 270 288 45 30 chr3 21863344 21863476 -205661102 - MER117 DNA MER1_type -32 165 32 555 307 92 9 chr3 21864254 21864472 -205660106 + MIR SINE MIR 27 262 0 381 319 77 6 chr3 21864584 21864753 -205659825 + MIR3 SINE MIR 6 186 -22 57 16 0 0 chr3 21864793 21864857 -205659721 + AT_rich Low_complexity Low_complexity 1 64 0 313 270 65 32 chr3 21864963 21865148 -205659430 + L2 LINE L2 2880 3070 -202 226 286 184 27 chr3 21865321 21865468 -205659110 + MIR SINE MIR 39 208 -54 481 300 64 5 chr3 21865567 21865769 -205658809 - MER113 DNA MER1_type? -188 333 116 1261 215 6 93 chr3 21865769 21866090 -205658488 + AluJo SINE Alu 2 294 -8 481 300 64 5 chr3 21866090 21866107 -205658471 - MER113 DNA MER1_type? -405 116 101 502 344 85 31 chr3 21866126 21866350 -205658228 + MIR SINE MIR 7 242 -20 248 172 86 52 chr3 21866661 21866719 -205657859 + MIR SINE MIR 103 162 -100 418 298 16 8 chr3 21867071 21867195 -205657383 + MIR SINE MIR 75 199 -63 370 323 8 8 chr3 21867667 21867791 -205656787 + MIR SINE MIR 21 144 -118 689 332 10 0 chr3 21867937 21868136 -205656442 - MIR SINE MIR -57 205 5 295 330 29 0 chr3 21868127 21868230 -205656348 - MIR SINE MIR -94 168 63 * 206 125 0 25 chr3 21868594 21868634 -205655944 + (TC)n Simple_repeat Simple_repeat 2 40 0 243 133 0 0 chr3 21869483 21869528 -205655050 + (TC)n Simple_repeat Simple_repeat 2 46 0 324 279 31 31 chr3 21869731 21869860 -205654718 - MIR SINE MIR -116 146 18 211 331 121 8 chr3 21870544 21870668 -205653910 - MIR3 SINE MIR -65 143 6 215 373 0 0 chr3 21870673 21870740 -205653838 + L2 LINE L2 3206 3272 0 226 271 17 0 chr3 21870802 21870861 -205653717 - MIR SINE MIR -92 170 111 267 336 0 28 chr3 21871198 21871305 -205653273 + MIR SINE MIR 68 171 -91 360 292 21 14 chr3 21871344 21871488 -205653090 + L1ME3A LINE L1 5794 5938 -232 2178 111 0 0 chr3 21871630 21871928 -205652650 - AluSx SINE Alu -14 298 1 550 211 63 28 chr3 21872086 21872228 -205652350 + MIR SINE MIR 84 230 -32 182 305 76 25 chr3 21872678 21872796 -205651782 + MIR SINE MIR 60 183 -79 213 240 53 13 chr3 21872935 21873010 -205651568 + L2 LINE L2 2985 3062 -210 328 292 94 0 chr3 21873238 21873334 -205651244 + L2 LINE L2 3150 3254 -18 1817 209 95 22 chr3 21873395 21873888 -205650690 + MLT1F LTR MaLR 12 540 -2 185 170 128 0 chr3 21874423 21874470 -205650108 - L2 LINE L2 -6 3266 3214 548 284 56 30 chr3 21874512 21874709 -205649869 + L2 LINE L2 2592 2793 -521 991 228 114 28 chr3 21874944 21875339 -205649239 + L1ME2 LINE L1 5736 6164 0 245 30 0 0 chr3 21875398 21875431 -205649147 + Alu SINE Alu 177 209 -93 248 64 0 21 chr3 21875432 21875479 -205649099 - Alu SINE Alu -1 301 256 1018 176 0 21 chr3 21875579 21875592 -205648986 + AluJo SINE Alu 124 136 -176 2143 115 3 0 chr3 21875592 21875888 -205648690 + AluSx SINE Alu 1 297 -15 1018 176 0 21 chr3 21875888 21876061 -205648517 + AluJo SINE Alu 136 306 -6 312 342 61 18 chr3 21876061 21876175 -205648403 + L1MD3 LINE L1 7658 7776 -219 575 188 0 8 chr3 21876195 21876323 -205648255 + GA-rich Low_complexity Low_complexity 3 129 0 236 300 159 12 chr3 21876359 21876616 -205647962 + L1MC4 LINE L1 7722 8016 -26 296 289 67 10 chr3 21876655 21876759 -205647819 + L2 LINE L2 2767 2876 -438 258 227 0 0 chr3 21876771 21876846 -205647732 + (CA)n Simple_repeat Simple_repeat 2 76 0 381 252 19 9 chr3 21876937 21877044 -205647534 - MLT1L LTR MaLR -341 274 167 209 283 19 0 chr3 21877259 21877312 -205647266 - MIR SINE MIR -62 146 93 193 262 75 47 chr3 21877830 21877937 -205646641 - L3b LINE CR1 -125 1458 1349 2135 125 0 7 chr3 21879378 21879682 -205644896 + AluSx SINE Alu 1 302 -10 410 271 256 0 chr3 21879805 21879938 -205644640 + MIR SINE MIR 31 197 -65 2122 113 3 3 chr3 21880087 21880389 -205644189 - AluSg SINE Alu -8 302 1 264 342 17 17 chr3 21880505 21880622 -205643956 - MIR SINE MIR -79 183 67 395 312 68 30 chr3 21880913 21881176 -205643402 + L2 LINE L2 1853 2125 -1189 248 241 190 0 chr3 21881430 21881509 -205643069 - MIR SINE MIR -7 255 162 379 271 29 24 chr3 21881522 21881692 -205642886 - MLT1H LTR MaLR -1 548 378 435 75 0 0 chr3 21881730 21881783 -205642795 + AluSq SINE Alu 123 175 -138 252 256 207 0 chr3 21881827 21881909 -205642669 - MLT1L LTR MaLR -380 169 71 489 328 74 4 chr3 21882418 21882647 -205641931 + MIR SINE MIR 17 261 -1 463 258 94 103 chr3 21882662 21882836 -205641742 - MER46C DNA MER2_type -3 335 164 790 161 0 29 chr3 21882836 21882973 -205641605 + FLAM_C SINE Alu 1 133 0 463 258 94 103 chr3 21882973 21883127 -205641451 - MER46C DNA MER2_type -174 164 10 2268 108 0 0 chr3 21883143 21883440 -205641138 - AluSx SINE Alu -15 297 1 495 244 106 19 chr3 21883458 21883618 -205640960 + MER5B DNA MER1_type 2 175 -3 263 320 103 26 chr3 21883665 21883859 -205640719 - L2 LINE L2 -212 3060 2852 2167 117 0 0 chr3 21884067 21884367 -205640211 - AluSx SINE Alu -12 300 1 1934 201 66 9 chr3 21884708 21885146 -205639432 + MLT1C LTR MaLR 1 463 -4 621 270 93 17 chr3 21885149 21885438 -205639140 + MER113 DNA MER1_type? 62 372 -149 210 118 0 0 chr3 21885438 21885472 -205639106 + (TTCTCC)n Simple_repeat Simple_repeat 1 34 0 2009 142 3 6 chr3 21885472 21885783 -205638795 - AluSq SINE Alu -2 311 2 1124 126 0 88 chr3 21885836 21885931 -205638647 + L1MA4 LINE L1 6083 6185 -115 2021 118 35 0 chr3 21885931 21886219 -205638359 - AluSx SINE Alu -14 298 1 1124 126 0 88 chr3 21886219 21886362 -205638216 + L1MA4 LINE L1 6185 6300 0 329 301 0 11 chr3 21886454 21886547 -205638031 - MIR SINE MIR -61 147 56 318 320 20 0 chr3 21887116 21887216 -205637362 + MIR SINE MIR 151 252 -10 2139 112 3 0 chr3 21887314 21887639 -205636939 + AluSp SINE Alu 1 313 0 885 279 134 53 chr3 21887707 21888342 -205636236 + MER115 DNA AcHobo 2 687 -6 412 326 28 22 chr3 21888813 21888994 -205635584 - MIR SINE MIR -74 188 7 268 82 20 20 chr3 21889504 21889553 -205635025 + (GAA)n Simple_repeat Simple_repeat 1 49 0 344 172 118 21 chr3 21889569 21889662 -205634916 + MER5B DNA MER1_type 72 173 -5 805 179 87 0 chr3 21889677 21889850 -205634728 - MER5A DNA MER1_type 0 189 2 206 311 0 16 chr3 21889874 21889935 -205634643 + MER5A DNA MER1_type 16 75 -114 753 180 0 0 chr3 21889936 21890058 -205634520 + FLAM_C SINE Alu 6 127 -16 785 98 80 0 chr3 21890061 21890173 -205634405 + 5S rRNA rRNA 1 121 0 2168 111 10 0 chr3 21890179 21890485 -205634093 + AluSg SINE Alu 1 309 -1 1320 147 0 10 chr3 21890495 21890817 -205633761 + AluJb SINE Alu 5 324 0 650 246 89 59 chr3 21890936 21891369 -205633209 - L1ME2 LINE L1 -144 6020 5579 692 194 14 58 chr3 21891372 21891511 -205633067 + FLAM_A SINE Alu 1 133 0 192 222 37 49 chr3 21891978 21892059 -205632519 - L2 LINE L2 -283 2989 2910 618 337 5 10 chr3 21892094 21892299 -205632279 - MIR SINE MIR -14 248 45 455 271 54 10 chr3 21892990 21893193 -205631385 - MER102b DNA MER1_type 0 341 130 180 0 0 0 chr3 21893193 21893213 -205631365 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1147 191 0 20 chr3 21893215 21893419 -205631159 - AluJb SINE Alu -30 282 83 293 278 30 30 chr3 21893419 21893552 -205631026 - MER102b DNA MER1_type -207 134 2 391 247 79 18 chr3 21893556 21893720 -205630858 - MIR SINE MIR -63 145 15 986 267 4 4 chr3 21893907 21894147 -205630431 + MIR SINE MIR 18 257 -5 2252 100 3 0 chr3 21894148 21894448 -205630130 + AluSp SINE Alu 1 301 -12 343 260 60 10 chr3 21894462 21894562 -205630016 - L2 LINE L2 -8 3305 3201 2334 75 23 0 chr3 21895468 21895774 -205628804 - AluSq SINE Alu 0 313 1 204 40 0 0 chr3 21895844 21895869 -205628709 + (GA)n Simple_repeat Simple_repeat 2 26 0 746 277 55 18 chr3 21896015 21896235 -205628343 - MIR SINE MIR -1 261 34 228 200 0 0 chr3 21896587 21896637 -205627941 + (TG)n Simple_repeat Simple_repeat 2 51 0 38 0 0 0 chr3 21896660 21896698 -205627880 + GC_rich Low_complexity Low_complexity 1 38 0 423 0 0 0 chr3 21897207 21897254 -205627324 + (TG)n Simple_repeat Simple_repeat 1 47 0 226 276 0 20 chr3 21897403 21897501 -205627077 + (TG)n Simple_repeat Simple_repeat 1 96 0 304 198 176 0 chr3 21898575 21898656 -205625922 + MIR3 SINE MIR 52 148 -60 227 318 37 72 chr3 21898656 21898857 -205625721 + MIR SINE MIR 3 196 -66 184 335 84 61 chr3 21899955 21900298 -205624280 - L2 LINE L2 -86 3186 2836 746 136 27 0 chr3 21900324 21900434 -205624144 - FLAM_C SINE Alu -25 118 6 341 242 14 67 chr3 21901034 21901174 -205623404 + MER5A DNA MER1_type 9 139 -44 1751 137 0 0 chr3 21901174 21901430 -205623148 - AluJb SINE Alu -7 305 50 2165 186 61 26 chr3 21901450 21901629 -205622949 - L1ME2 LINE L1 -1 6163 5992 1678 170 20 13 chr3 21901629 21901935 -205622643 - AluJb SINE Alu -4 308 1 2165 186 61 26 chr3 21901935 21902325 -205622253 - L1ME2 LINE L1 -172 5992 5574 2054 106 0 0 chr3 21902461 21902735 -205621843 - AluSx SINE Alu -9 303 30 374 338 50 6 chr3 21902738 21902898 -205621680 - L1M4 LINE L1 -3104 3042 2876 2442 67 0 6 chr3 21902925 21903237 -205621341 - AluY SINE Alu -1 310 1 253 284 102 0 chr3 21903689 21903777 -205620801 - L2 LINE L2 -14 3258 3162 224 197 15 136 chr3 21903923 21903989 -205620589 - MIR3 SINE MIR -42 166 109 2103 106 31 0 chr3 21904035 21904327 -205620251 + AluSg SINE Alu 1 301 -9 395 319 118 12 chr3 21905252 21905565 -205619013 + L2 LINE L2 2718 3053 -219 229 236 0 18 chr3 21905554 21905609 -205618969 + L2 LINE L2 3243 3296 -17 * 192 40 0 0 chr3 21905890 21905915 -205618663 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 394 264 132 14 chr3 21905917 21906061 -205618517 - L2 LINE L2 -13 3300 3140 1529 150 75 4 chr3 21906529 21906783 -205617795 + AluJb SINE Alu 3 274 -38 391 250 11 0 chr3 21906783 21906871 -205617707 - MER5A DNA MER1_type -92 97 9 349 167 157 46 chr3 21906934 21907042 -205617536 - MIR SINE MIR -66 196 77 758 247 23 0 chr3 21907625 21907799 -205616779 + MER5A DNA MER1_type 6 183 -6 187 305 122 53 chr3 21907883 21908014 -205616564 - MIR3 SINE MIR -14 194 55 27 0 0 0 chr3 21908058 21908085 -205616493 + AT_rich Low_complexity Low_complexity 1 27 0 880 295 90 30 chr3 21908125 21908559 -205616019 - MLT1K LTR MaLR -38 550 91 1722 159 10 23 chr3 21908648 21908949 -205615629 - AluJo SINE Alu -5 307 11 227 206 65 43 chr3 21909123 21909215 -205615363 - MER117 DNA MER1_type -16 181 88 383 245 57 9 chr3 21909255 21909361 -205615217 + L2 LINE L2 3200 3310 -3 337 322 0 22 chr3 21910203 21910386 -205614192 + (TG)n Simple_repeat Simple_repeat 1 179 0 1226 163 0 5 chr3 21910977 21911186 -205613392 - AluJb SINE Alu -16 296 89 798 155 8 0 chr3 21911186 21911315 -205613263 + AluJo SINE Alu 7 136 -176 675 235 53 114 chr3 21911359 21911579 -205612999 - L1MC4 LINE L1 -32 8010 7732 2365 70 0 3 chr3 21911579 21911881 -205612697 + AluY SINE Alu 1 301 -10 675 235 53 114 chr3 21911881 21912046 -205612532 - L1MC4 LINE L1 -310 7732 7559 614 305 94 14 chr3 21912813 21913026 -205611552 - MIR SINE MIR 0 262 33 208 217 113 82 chr3 21913391 21913535 -205611043 + MIR3 SINE MIR 2 150 -68 333 347 20 14 chr3 21913626 21913773 -205610805 + MIR SINE MIR 14 161 -101 1454 109 0 0 chr3 21914283 21914475 -205610103 + AluSx SINE Alu 4 195 -117 346 325 110 51 chr3 21914533 21914619 -205609959 - L1MC/D LINE L1 -2016 5792 5713 1886 146 24 0 chr3 21914619 21914913 -205609665 - AluJb SINE Alu -11 301 1 710 216 0 0 chr3 21914917 21915056 -205609522 - L1MB2 LINE L1 -2 6169 6031 346 325 110 51 chr3 21915056 21915201 -205609377 - L1MC/D LINE L1 -2097 5711 5542 362 278 49 94 chr3 21915444 21915689 -205608889 + MIR SINE MIR 17 250 -12 321 268 82 22 chr3 21915812 21915955 -205608623 - MIR SINE MIR -60 148 38 217 288 30 12 chr3 21916420 21916527 -205608051 + MIR SINE MIR 55 165 -43 225 296 70 0 chr3 21917488 21917559 -205607019 - L2 LINE L2 0 3313 3238 292 273 78 0 chr3 21917629 21917706 -205606872 - MIR3 SINE MIR -45 163 81 294 176 18 0 chr3 21917789 21917854 -205606724 + MIR SINE MIR 89 145 -63 202 313 62 39 chr3 21918552 21918680 -205605898 - L2 LINE L2 -303 2969 2839 298 209 9 109 chr3 21919319 21919429 -205605149 - MIR SINE MIR -63 145 47 237 269 161 46 chr3 21920201 21920331 -205604247 + MIR3 SINE MIR 37 181 -27 304 355 26 33 chr3 21920358 21920510 -205604068 + MIR SINE MIR 51 201 -61 471 285 183 11 chr3 21921395 21921581 -205602997 - MIR SINE MIR -14 248 31 582 260 19 13 chr3 21922553 21922707 -205601871 - MIR SINE MIR -2 260 106 424 230 119 16 chr3 21923311 21923437 -205601141 + MIR SINE MIR 7 145 -117 454 286 28 21 chr3 21923741 21923903 -205600675 - MER5A DNA MER1_type -6 172 21 180 282 26 64 chr3 21923965 21924043 -205600535 - MIR SINE MIR -109 153 79 202 167 48 0 chr3 21924911 21924953 -205599625 + MIR SINE MIR 102 145 -63 295 191 79 56 chr3 21925033 21925122 -205599456 + MIR3 SINE MIR 114 204 -4 207 292 87 68 chr3 21925499 21925718 -205598860 - L2 LINE L2 -154 3118 2896 256 310 14 0 chr3 21926058 21926129 -205598449 - MIR SINE MIR -111 151 80 2126 120 3 7 chr3 21927648 21927957 -205596621 + AluSx SINE Alu 1 308 -4 405 224 296 31 chr3 21928276 21928472 -205596106 + MIR SINE MIR 14 261 -1 190 161 0 0 chr3 21928473 21928504 -205596074 + L2 LINE L2 3023 3053 -260 266 261 189 9 chr3 21928531 21928642 -205595936 + L2 LINE L2 3152 3282 -31 347 252 58 29 chr3 21929288 21929391 -205595187 + MIR SINE MIR 36 141 -67 1582 203 0 10 chr3 21930318 21930628 -205593950 - AluJo SINE Alu -1 311 5 405 0 0 0 chr3 21930665 21930710 -205593868 + (T)n Simple_repeat Simple_repeat 1 45 0 283 255 113 0 chr3 21930744 21930850 -205593728 - MER117 DNA MER1_type -46 151 34 323 316 49 85 chr3 21931112 21931359 -205593219 + MIR SINE MIR 11 248 -14 1595 116 0 0 chr3 21931386 21931602 -205592976 - AluJb SINE Alu -12 300 85 1364 178 19 45 chr3 21931605 21931914 -205592664 - L1MA8 LINE L1 -4 6287 5987 239 0 32 0 chr3 21931940 21931971 -205592607 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 461 123 0 14 chr3 21932099 21932204 -205592374 + AluSp/q SINE Alu 224 313 0 187 184 0 0 chr3 21932206 21932244 -205592334 + MER5A DNA MER1_type 68 105 -84 274 368 53 0 chr3 21932287 21932420 -205592158 - MIR3 SINE MIR -25 183 44 600 291 106 48 chr3 21932576 21933037 -205591541 - L2 LINE L2 -1 3312 2825 233 222 42 28 chr3 21933242 21933314 -205591264 - AluSg/x SINE Alu -139 163 91 422 247 201 31 chr3 21933357 21933551 -205591027 - MIR SINE MIR -6 256 30 214 308 58 64 chr3 21934321 21934477 -205590101 + MIR SINE MIR 82 236 -26 185 262 71 85 chr3 21934994 21935135 -205589443 + MIR SINE MIR 28 166 -96 611 286 25 12 chr3 21935203 21935364 -205589214 - MIR SINE MIR -15 247 85 515 320 95 16 chr3 21935481 21935869 -205588709 - L2 LINE L2 -363 2951 2533 255 349 83 23 chr3 21936147 21936365 -205588213 + L3 LINE CR1 1209 1439 -138 479 309 24 24 chr3 21936990 21937155 -205587423 - L2 LINE L2 -31 3282 3118 462 259 89 51 chr3 21937157 21937393 -205587185 - MER102a DNA MER1_type -9 321 77 236 234 0 0 chr3 21937451 21937501 -205587077 - MIR SINE MIR -56 152 108 337 204 36 80 chr3 21937895 21938032 -205586546 - LTR33 LTR ERVL -374 147 17 235 225 14 42 chr3 21939205 21939276 -205585302 + MIR SINE MIR 81 149 -113 358 273 79 42 chr3 21939286 21939502 -205585076 + MER113 DNA MER1_type? 3 226 -295 2515 58 3 0 chr3 21940265 21940574 -205584004 + AluY SINE Alu 1 310 -1 217 234 0 0 chr3 21941010 21941057 -205583521 - L2 LINE L2 0 3313 3267 2573 170 43 2 chr3 21941251 21941693 -205582885 + L1PA16 LINE L1 5704 6163 -3 561 336 94 8 chr3 21941709 21941944 -205582634 + MIR SINE MIR 2 256 -6 301 180 22 0 chr3 21942105 21942194 -205582384 + (TCCA)n Simple_repeat Simple_repeat 3 93 0 720 203 8 8 chr3 21942226 21942476 -205582102 + (TCCA)n Simple_repeat Simple_repeat 1 250 0 235 269 0 15 chr3 21942499 21942566 -205582012 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 555 282 0 8 chr3 21943100 21943231 -205581347 + MIR SINE MIR 50 179 -83 1075 268 80 31 chr3 21943369 21943826 -205580752 - MLT1H LTR MaLR 0 549 28 321 279 143 14 chr3 21944676 21944816 -205579762 + MIR SINE MIR 27 184 -78 2213 101 0 0 chr3 21944860 21945174 -205579404 - AluSc SINE Alu 0 314 1 555 297 65 12 chr3 21946009 21946255 -205578323 + L2 LINE L2 2425 2683 -631 200 220 60 0 chr3 21946408 21946458 -205578120 + MIR SINE MIR 96 148 -60 * 350 298 133 11 chr3 21946450 21946638 -205577940 - L2 LINE L2 -234 3038 2828 227 278 19 74 chr3 21947339 21947447 -205577131 + MIR SINE MIR 57 162 -46 211 212 82 59 chr3 21947509 21947594 -205576984 - MIR SINE MIR -134 128 42 274 299 0 0 chr3 21948593 21948670 -205575908 + MIR SINE MIR 74 150 -112 * 946 265 137 32 chr3 21948668 21949106 -205575472 - L2 LINE L2 0 3313 2830 314 319 145 6 chr3 21949246 21949412 -205575166 - L2 LINE L2 -559 2755 2567 649 296 71 10 chr3 21949975 21950283 -205574295 - L1MC4a LINE L1 -1869 5939 5613 442 274 117 20 chr3 21951119 21951316 -205573262 + MIR SINE MIR 1 216 -46 450 248 124 0 chr3 21951528 21951649 -205572929 - L2 LINE L2 0 3313 3178 21 0 0 0 chr3 21951686 21951707 -205572871 + AT_rich Low_complexity Low_complexity 1 21 0 264 160 60 0 chr3 21951823 21951873 -205572705 - MIR SINE MIR -99 163 111 180 394 21 11 chr3 21952625 21952719 -205571859 - MIR SINE MIR -65 143 49 345 240 141 5 chr3 21952779 21952911 -205571667 - MIR SINE MIR -63 145 3 239 357 107 9 chr3 21952916 21953028 -205571550 - MIR3 SINE MIR -71 137 15 460 235 117 66 chr3 21953318 21953514 -205571064 + MER63A DNA MER1_type 3 208 -2 183 320 247 0 chr3 21953699 21953796 -205570782 + MER5A DNA MER1_type 69 189 0 316 192 14 27 chr3 21954811 21954884 -205569694 - MIR SINE MIR -58 150 85 * 327 219 270 15 chr3 21954865 21955002 -205569576 + MIR SINE MIR 85 256 -6 847 163 30 48 chr3 21955016 21955182 -205569396 - FRAM SINE Alu 0 166 4 1051 275 39 46 chr3 21955265 21955654 -205568924 - L2 LINE L2 -2 3311 2926 216 209 0 0 chr3 21956183 21956226 -205568352 + MIR SINE MIR 97 139 -69 690 289 31 4 chr3 21956315 21956540 -205568038 - MIR SINE MIR -33 229 3 285 296 112 24 chr3 21956757 21956882 -205567696 + MIR3 SINE MIR 10 145 -63 608 232 56 67 chr3 21957380 21957540 -205567038 - MER4C LTR ERV1 0 695 535 1831 156 14 3 chr3 21957540 21957829 -205566749 + AluJb SINE Alu 1 292 -20 608 232 56 67 chr3 21957829 21958231 -205566347 - MER4C LTR ERV1 -160 535 1 609 312 45 5 chr3 21958292 21958513 -205566065 + MIR SINE MIR 28 257 -5 182 152 0 0 chr3 21959074 21959107 -205565471 - MIR SINE MIR -62 146 114 328 364 32 13 chr3 21959194 21959348 -205565230 - MIR3 SINE MIR -14 194 38 728 272 31 10 chr3 21959436 21959631 -205564947 + MIR SINE MIR 59 257 -5 217 283 11 54 chr3 21959861 21959953 -205564625 + MIR3 SINE MIR 90 177 -31 210 259 176 0 chr3 21960075 21960160 -205564418 + MIR SINE MIR 40 139 -123 601 227 88 31 chr3 21960614 21960822 -205563756 - MIR SINE MIR -14 248 31 491 252 103 28 chr3 21961015 21961109 -205563469 - MIR SINE MIR -5 257 171 2285 91 7 10 chr3 21961109 21961417 -205563161 + AluSx SINE Alu 6 312 0 491 252 103 28 chr3 21961417 21961572 -205563006 - MIR SINE MIR -91 171 5 278 293 181 33 chr3 21962547 21962762 -205561816 - MIR SINE MIR -9 253 7 218 271 0 57 chr3 21963774 21963844 -205560734 - L2 LINE L2 0 3313 3248 207 0 0 0 chr3 21966255 21966278 -205558300 + (T)n Simple_repeat Simple_repeat 1 23 0 336 238 0 59 chr3 21966542 21966643 -205557935 - MIR3 SINE MIR -15 193 99 245 330 179 9 chr3 21969168 21969274 -205555304 - MIR SINE MIR -55 153 30 734 169 12 41 chr3 21969508 21969680 -205554898 - L1MB3 LINE L1 -35 6148 5982 453 276 105 17 chr3 21969687 21969868 -205554710 - MIR SINE MIR -54 208 12 2099 135 0 0 chr3 21970160 21970457 -205554121 - AluSx SINE Alu -15 297 1 261 258 192 8 chr3 21970577 21970697 -205553881 - MIR SINE MIR -56 206 65 202 216 0 59 chr3 21971717 21971768 -205552810 - MIR3 SINE MIR -48 160 113 321 364 45 45 chr3 21971803 21972089 -205552489 - L2 LINE L2 -1 3271 2986 364 299 163 45 chr3 21973380 21973697 -205550881 - L1M LINE L1 -743 5403 5102 364 333 33 22 chr3 21974439 21974619 -205549959 - L2 LINE L2 -209 3063 2882 396 292 11 0 chr3 21975163 21975252 -205549326 + MIR SINE MIR 63 152 -56 368 316 170 19 chr3 21976149 21976626 -205547952 - L2 LINE L2 -1 3271 2709 285 333 0 0 chr3 21977022 21977097 -205547481 + MIR SINE MIR 69 143 -65 251 307 0 0 chr3 21978744 21978819 -205545759 - Charlie8 DNA MER1_type -2214 203 129 1319 152 74 16 chr3 21978835 21979079 -205545499 - AluJo SINE Alu -30 282 25 232 307 145 11 chr3 21979520 21979699 -205544879 + L3 LINE CR1 1176 1378 -199 192 321 28 37 chr3 21979789 21979898 -205544680 - MIR3 SINE MIR -20 188 81 302 96 0 19 chr3 21980266 21980318 -205544260 + (TG)n Simple_repeat Simple_repeat 2 52 0 294 327 30 0 chr3 21982789 21982890 -205541688 - MIR3 SINE MIR -4 204 101 207 69 0 0 chr3 22083124 22083153 -205441425 + (TC)n Simple_repeat Simple_repeat 1 29 0 267 103 0 0 chr3 22083153 22083192 -205441386 + (TG)n Simple_repeat Simple_repeat 2 40 0 4820 137 23 29 chr3 22083192 22083524 -205441054 - L1MA9 LINE L1 -162 6150 5818 2366 94 0 0 chr3 22083524 22083832 -205440746 - AluSc SINE Alu -1 308 1 4820 137 23 29 chr3 22083832 22084358 -205440220 - L1MA9 LINE L1 -494 5818 5297 2255 115 6 6 chr3 22085920 22086232 -205438346 + AluSx SINE Alu 1 312 0 371 265 17 34 chr3 22088737 22088854 -205435724 - L2 LINE L2 -6 3307 3193 608 124 124 70 chr3 22089168 22089297 -205435281 + MER44D DNA MER2_type 1 406 -203 23728 136 37 12 chr3 22089298 22092461 -205432117 - L1MA3 LINE L1 0 7724 4640 2242 123 0 3 chr3 22092461 22092761 -205431817 - AluSx SINE Alu -11 301 3 23728 136 37 12 chr3 22092761 22094041 -205430537 - L1MA3 LINE L1 -3084 4640 3393 1828 129 53 0 chr3 22094041 22094345 -205430233 - AluSx SINE Alu 0 324 7 23728 136 37 12 chr3 22094345 22095231 -205429347 - L1MA3 LINE L1 -4331 3393 2530 4765 50 0 14 chr3 22095231 22095817 -205428761 - L1PA6 LINE L1 -6 6148 5571 23728 136 37 12 chr3 22095817 22098009 -205426569 - L1MA3 LINE L1 -5194 2530 20 1019 178 55 0 chr3 22098012 22098214 -205426364 + MER44D DNA MER2_type 485 697 -8 2608 72 29 0 chr3 22099729 22100074 -205424504 - THE1A LTR MaLR 0 355 1 2906 67 30 40 chr3 22100074 22100115 -205424463 - THE1A-int LTR MaLR 0 1580 1540 2283 117 0 0 chr3 22100115 22100415 -205424163 - AluSx SINE Alu -12 300 1 2906 67 30 40 chr3 22100415 22100778 -205423800 - THE1A-int LTR MaLR -40 1540 1180 263 222 34 77 chr3 22101163 22101280 -205423298 - MIR SINE MIR -82 180 69 184 246 31 15 chr3 22103362 22103427 -205421151 - MIR SINE MIR -120 142 77 * 294 341 50 22 chr3 22103424 22103606 -205420972 - MIR3 SINE MIR -6 202 16 409 260 102 16 chr3 22104329 22104456 -205420122 + MIR3 SINE MIR 34 171 -37 2471 77 0 0 chr3 22104642 22104942 -205419636 + AluY SINE Alu 1 300 -11 10209 221 38 37 chr3 22105038 22105120 -205419458 - L1M4 LINE L1 -712 5466 5386 423 0 0 0 chr3 22105120 22105167 -205419411 + (TG)n Simple_repeat Simple_repeat 2 48 0 10209 221 38 37 chr3 22105167 22105487 -205419091 - L1M4 LINE L1 -792 5386 5068 2383 91 7 13 chr3 22105487 22105796 -205418782 - AluSp SINE Alu -6 307 1 10209 221 38 37 chr3 22105796 22106307 -205418271 - L1M4 LINE L1 -1110 5068 4559 2086 125 4 0 chr3 22106307 22106617 -205417961 - AluSx SINE Alu 0 311 1 10209 221 38 37 chr3 22106617 22108557 -205416021 - L1M4 LINE L1 -1619 4559 2609 2233 118 0 13 chr3 22108557 22108871 -205415707 - AluSx SINE Alu -2 310 1 10209 221 38 37 chr3 22108871 22109248 -205415330 - L1M4 LINE L1 -3569 2609 2234 238 148 49 33 chr3 22109391 22109452 -205415126 + L2 LINE L2 3248 3309 -4 238 329 0 0 chr3 22109526 22109610 -205414968 - MER117 DNA MER1_type 0 197 114 271 111 238 0 chr3 22109610 22109673 -205414905 - MLT1K LTR MaLR 0 588 511 242 226 16 0 chr3 22110090 22110152 -205414426 - MER117 DNA MER1_type -79 118 56 266 231 176 22 chr3 22110243 22110334 -205414244 + MIR SINE MIR 32 136 -72 1800 166 34 9 chr3 22110339 22110665 -205413913 + MLT1A1 LTR MaLR 5 338 -27 236 266 80 9 chr3 22110679 22110792 -205413786 + MIR SINE MIR 132 252 -10 1281 264 68 15 chr3 22110800 22111198 -205413380 - LTR16C LTR ERVL -2 489 71 4067 159 28 29 chr3 22111794 22112300 -205412278 - L1MB7 LINE L1 -11 6173 5667 2403 160 13 8 chr3 22112300 22112694 -205411884 + MSTD LTR MaLR 1 396 0 4067 159 28 29 chr3 22112694 22112978 -205411600 - L1MB7 LINE L1 -517 5667 5384 2242 291 9 7 chr3 22113170 22113751 -205410827 - MLT1K LTR MaLR -4 584 3 1338 190 6 2 chr3 22113959 22114265 -205410313 - MLT1A1 LTR MaLR -4 361 1 417 308 44 19 chr3 22115135 22115294 -205409284 + MIR SINE MIR 21 183 -79 814 153 8 0 chr3 22115644 22115775 -205408803 + AluJo SINE Alu 5 136 -176 440 238 16 32 chr3 22116317 22116443 -205408135 + MLT1J2 LTR MaLR 84 207 -243 1296 176 176 60 chr3 22116514 22116867 -205407711 + MSTD LTR MaLR 1 394 -2 1080 128 6 34 chr3 22116936 22117115 -205407463 + MER20 DNA MER1_type 46 219 0 378 296 19 19 chr3 22117138 22117300 -205407278 + L2 LINE L2 2710 2871 -443 401 311 114 18 chr3 22117596 22117824 -205406754 + MIR SINE MIR 11 260 -2 309 276 20 0 chr3 22118551 22118649 -205405929 + MIR SINE MIR 109 208 -54 599 161 90 13 chr3 22118650 22118805 -205405773 - L1 LINE L1 -3004 3142 2976 3429 137 28 18 chr3 22118806 22119405 -205405173 + L1MA7 LINE L1 5687 6291 0 236 250 42 0 chr3 22119426 22119498 -205405080 + MLT1F1 LTR MaLR 73 147 -420 2266 233 25 12 chr3 22119498 22120056 -205404522 + L1MC3 LINE L1 7213 7777 -8 362 284 87 28 chr3 22120259 22120477 -205404101 + L2 LINE L2 2666 2896 -418 2138 196 40 13 chr3 22120952 22121407 -205403171 + MLT1C LTR MaLR 1 467 0 659 256 30 6 chr3 22122199 22122367 -205402211 + MIR SINE MIR 28 199 -63 24 0 0 0 chr3 22124088 22124112 -205400466 + AT_rich Low_complexity Low_complexity 1 24 0 930 226 72 25 chr3 22124695 22125080 -205399498 - MER68 LTR ERV1 -122 440 1 2430 189 50 20 chr3 22125080 22125780 -205398798 - L1MC/D LINE L1 -540 5787 5060 1282 184 9 0 chr3 22125780 22125997 -205398581 + MER20 DNA MER1_type 1 219 0 2430 189 50 20 chr3 22125997 22126219 -205398359 - L1MC/D LINE L1 -1267 5060 4846 1098 184 24 0 chr3 22126233 22126439 -205398139 - L1MC/D LINE L1 -2267 3862 3652 * 3516 255 75 46 chr3 22126420 22126922 -205397656 - L1MEc LINE L1 -2215 4000 3514 2341 96 0 0 chr3 22126922 22127214 -205397364 - AluSc SINE Alu -17 292 1 3516 255 75 46 chr3 22127214 22128822 -205395756 - L1MEc LINE L1 -2701 3514 1881 2323 101 0 3 chr3 22128825 22129122 -205395456 - AluSx SINE Alu -16 296 1 593 228 89 113 chr3 22129184 22129512 -205395066 - L1MEd LINE L1 -2666 3463 3129 2300 128 0 0 chr3 22129512 22129818 -205394760 - AluSx SINE Alu -6 306 1 1925 150 0 0 chr3 22129827 22130094 -205394484 - AluSx SINE Alu -45 267 1 593 228 89 113 chr3 22130094 22130570 -205394008 - L1MEd LINE L1 -3008 3121 2635 15715 123 21 10 chr3 22130570 22131392 -205393186 - Tigger1 DNA MER2_type 0 2418 1606 2314 111 0 13 chr3 22131392 22131562 -205393016 - AluSx SINE Alu -9 303 132 2383 81 0 10 chr3 22131562 22131858 -205392720 - AluY SINE Alu -18 293 1 2185 92 6 68 chr3 22131858 22132183 -205392395 - AluSp SINE Alu -8 305 1 2314 111 0 13 chr3 22132183 22132318 -205392260 - AluSx SINE Alu -178 134 1 15715 123 21 10 chr3 22132318 22133887 -205390691 - Tigger1 DNA MER2_type -812 1606 1 593 228 89 113 chr3 22133887 22134215 -205390363 - L1MEd LINE L1 -3494 2635 758 2017 186 7 63 chr3 22134845 22135292 -205389286 - MER66B LTR ERV1 -38 448 27 212 200 89 0 chr3 22135299 22135344 -205389234 - L2 LINE L2 -658 2656 2608 473 43 145 0 chr3 22135344 22135413 -205389165 + MADE1 DNA Mariner 1 79 -1 303 261 34 59 chr3 22135449 22135568 -205389010 - L2 LINE L2 -829 2485 2370 2748 79 3 3 chr3 22135878 22136231 -205388347 - THE1A LTR MaLR 0 355 3 11808 88 14 1 chr3 22136233 22137794 -205386784 - THE1A-int LTR MaLR 0 1580 1 2679 82 8 3 chr3 22137794 22138147 -205386431 - THE1A LTR MaLR 0 355 1 411 293 127 6 chr3 22138406 22138587 -205385991 - LTR33 LTR ERVL -198 323 121 627 271 23 7 chr3 22138775 22139049 -205385529 - L1MC/D LINE L1 -2081 5727 5366 1209 189 35 16 chr3 22139054 22139308 -205385270 - L1MB4 LINE L1 -14 6166 5908 1786 230 38 9 chr3 22139308 22139756 -205384822 - MER65C LTR ERV1 0 461 1 1962 223 56 71 chr3 22140250 22140801 -205383777 - MER65-int LTR ERV1 -656 4215 3673 242 311 49 8 chr3 22141356 22141478 -205383100 + MIR SINE MIR 114 240 -22 1594 236 89 23 chr3 22141497 22141968 -205382610 - MLT1D LTR MaLR -3 502 1 656 169 90 24 chr3 22141999 22142165 -205382413 - MIR SINE MIR -66 196 20 1909 61 0 41 chr3 22142181 22142426 -205382152 - AluSg SINE Alu -75 235 1 181 205 0 0 chr3 22142463 22142502 -205382076 + MIR SINE MIR 224 262 0 576 250 0 0 chr3 22143695 22143823 -205380755 - MIR SINE MIR -51 211 84 2493 46 0 0 chr3 22143841 22144123 -205380455 + AluSp SINE Alu 1 282 -31 2004 134 20 0 chr3 22146256 22146548 -205378030 + AluJb SINE Alu 1 298 -14 2309 248 97 26 chr3 22147192 22148027 -205376551 - L1MC4 LINE L1 -30 8012 7119 231 262 90 33 chr3 22148519 22148641 -205375937 + MIR SINE MIR 87 215 -47 197 226 97 54 chr3 22148700 22148793 -205375785 + L2 LINE L2 1875 1971 -1343 491 259 65 22 chr3 22149321 22149506 -205375072 + L2 LINE L2 3118 3310 -3 462 272 15 29 chr3 22149783 22149919 -205374659 - L2 LINE L2 0 3313 3180 1460 168 39 81 chr3 22150630 22150939 -205373639 + AluJo SINE Alu 5 300 -12 2203 121 0 0 chr3 22151445 22151742 -205372836 + AluSg SINE Alu 1 297 -13 207 234 0 0 chr3 22153001 22153048 -205371530 - L2 LINE L2 -13 3259 3213 260 323 21 0 chr3 22153280 22153373 -205371205 + MIR SINE MIR 59 153 -109 779 157 0 22 chr3 22154111 22154245 -205370333 - AluJ SINE Alu 0 312 182 872 129 8 0 chr3 22154254 22154378 -205370200 - AluJ SINE Alu -187 125 1 225 0 0 0 chr3 22156310 22156335 -205368243 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2308 82 3 28 chr3 22156820 22157139 -205367439 + AluY SINE Alu 1 311 0 2362 85 3 0 chr3 22157412 22157706 -205366872 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr3 22159586 22159620 -205364958 + AT_rich Low_complexity Low_complexity 1 34 0 758 266 54 76 chr3 22159829 22160291 -205364287 - MLT1J LTR MaLR -52 459 8 472 324 94 25 chr3 22160672 22160916 -205363662 + MIR SINE MIR 2 262 0 221 285 33 80 chr3 22163418 22163569 -205361009 - MIR3 SINE MIR -62 146 3 2241 181 32 7 chr3 22163721 22164152 -205360426 + L1M4 LINE L1 4594 5035 -1111 2517 63 0 3 chr3 22164284 22164583 -205359995 + AluY SINE Alu 1 298 -13 1176 78 13 13 chr3 22165093 22165247 -205359331 + AluSp SINE Alu 147 300 -13 1187 164 130 34 chr3 22165258 22165582 -205358996 - Charlie5 DNA MER1_type -25 2587 2233 360 265 39 0 chr3 22165577 22165679 -205358899 - Charlie5 DNA MER1_type -2506 106 1 * 2057 110 38 10 chr3 22166746 22167062 -205357516 - AluSx SINE Alu 0 312 1 2378 93 0 3 chr3 22168560 22168871 -205355707 - AluSq SINE Alu -3 310 1 239 301 125 34 chr3 22169473 22169649 -205354929 + L2 LINE L2 3076 3267 -5 316 360 36 21 chr3 22169969 22170228 -205354350 + L2 LINE L2 2777 3037 -235 198 0 0 0 chr3 22170229 22170251 -205354327 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 557 251 95 71 chr3 22170466 22170833 -205353745 - MLT1J LTR MaLR -31 584 201 3966 167 63 15 chr3 22170927 22171736 -205352842 + L1MB8 LINE L1 5331 6178 0 418 203 203 7 chr3 22173028 22173176 -205351402 + MER104 DNA MER2_type 4 180 0 192 97 0 0 chr3 22174063 22174094 -205350484 + (CCA)n Simple_repeat Simple_repeat 3 33 0 2379 99 0 0 chr3 22174668 22174971 -205349607 + AluSg SINE Alu 1 303 -7 410 303 25 12 chr3 22175554 22175716 -205348862 + L1ME3A LINE L1 5493 5656 -514 209 274 119 0 chr3 22175718 22175802 -205348776 - MER5C DNA MER1_type -2 322 229 208 296 10 51 chr3 22175813 22175911 -205348667 - MER5C DNA MER1_type -200 124 31 302 296 42 58 chr3 22175923 22175977 -205348601 + L1ME3A LINE L1 5649 5702 -468 834 138 15 15 chr3 22175977 22176107 -205348471 + FLAM_C SINE Alu 4 133 0 302 296 42 58 chr3 22176107 22176292 -205348286 + L1ME3A LINE L1 5702 5884 -286 1456 189 118 38 chr3 22176666 22176836 -205347742 + MLT1C LTR MaLR 7 162 -305 444 104 0 0 chr3 22176836 22176903 -205347675 + (CA)n Simple_repeat Simple_repeat 2 68 0 1456 189 118 38 chr3 22176903 22177156 -205347422 + MLT1C LTR MaLR 162 464 -3 3156 214 29 18 chr3 22177174 22178050 -205346528 - L1M4c LINE L1 -4229 2155 1179 245 247 71 35 chr3 22178252 22178337 -205346241 + MIR SINE MIR 46 133 -129 577 159 11 0 chr3 22178337 22178425 -205346153 - MER81 DNA DNA 0 114 26 213 176 98 0 chr3 22178434 22178485 -205346093 + MIR SINE MIR 128 183 -79 1919 151 3 31 chr3 22179274 22179591 -205344987 - AluJo SINE Alu -2 310 3 23 0 0 0 chr3 22180352 22180375 -205344203 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr3 22180642 22180678 -205343900 + AT_rich Low_complexity Low_complexity 1 36 0 1029 160 129 10 chr3 22180709 22180903 -205343675 - MER20 DNA MER1_type 0 219 3 288 252 19 39 chr3 22181446 22181549 -205343029 - MER5B DNA MER1_type -1 177 77 338 292 62 28 chr3 22181726 22181870 -205342708 + MIR3 SINE MIR 2 150 -58 2836 266 76 40 chr3 22182317 22183906 -205340672 - L1ME LINE L1 -4440 1640 6 344 316 35 0 chr3 22184534 22184648 -205339930 - MIR SINE MIR -142 120 3 2379 74 0 3 chr3 22184682 22185017 -205339561 - AluY SINE Alu 0 335 2 462 18 0 0 chr3 22185222 22185277 -205339301 + (TTG)n Simple_repeat Simple_repeat 1 55 0 1788 301 38 11 chr3 22186650 22187201 -205337377 - MLT1K LTR MaLR 0 588 23 556 206 0 64 chr3 22187717 22187858 -205336720 - MER94 DNA DNA -1 133 2 235 285 125 56 chr3 22188095 22188239 -205336339 - L2 LINE L2 -8 3264 3111 1908 117 33 4 chr3 22188466 22188807 -205335771 - AluSx SINE Alu 0 349 1 1243 218 29 3 chr3 22189193 22189509 -205335069 + MER33 DNA MER1_type 1 324 0 184 235 20 20 chr3 22190626 22190677 -205333901 - L2 LINE L2 -188 3084 3034 710 219 186 39 chr3 22190762 22191073 -205333505 - LTR16A LTR ERVL -6 444 88 203 282 117 91 chr3 22191174 22191472 -205333106 - L2 LINE L2 -16 3256 2951 382 305 84 21 chr3 22193409 22193585 -205330993 - L2 LINE L2 -43 3270 3083 972 212 150 27 chr3 22193585 22193878 -205330700 + MER58B DNA MER1_type 1 329 -12 532 293 56 8 chr3 22193892 22194210 -205330368 - L2 LINE L2 -196 3117 2778 2202 107 7 0 chr3 22194234 22194533 -205330045 - AluSx SINE Alu -11 301 1 980 238 62 40 chr3 22194584 22194937 -205329641 - L1ME3A LINE L1 -2 6168 5808 27 62 0 0 chr3 22195132 22195180 -205329398 + AT_rich Low_complexity Low_complexity 1 48 0 4736 216 77 31 chr3 22195196 22196653 -205327925 - L1M4 LINE L1 -2386 4258 2870 719 213 0 0 chr3 22196653 22196780 -205327798 - FLAM_A SINE Alu -6 127 1 4736 216 77 31 chr3 22196780 22197574 -205327004 - L1M4 LINE L1 -3774 2870 2114 1810 171 10 26 chr3 22197574 22197879 -205326699 + AluJb SINE Alu 1 300 -12 4736 216 77 31 chr3 22197879 22198556 -205326022 - L1M4 LINE L1 -4530 2114 1196 1462 156 8 4 chr3 22198555 22198793 -205325785 + L1P3 LINE L1 2 240 -6221 * 9543 66 0 0 chr3 22198795 22200799 -205323779 + L1PA6 LINE L1 4148 6146 -8 1955 209 61 69 chr3 22200817 22201487 -205323091 - L1M4 LINE L1 -5357 1185 521 459 213 8 16 chr3 22201628 22201750 -205322828 + Alu SINE Alu 183 303 -7 288 173 0 19 chr3 22201996 22202048 -205322530 + L2 LINE L2 3255 3305 -8 1354 245 118 44 chr3 22202048 22202849 -205321729 - L2 LINE L2 -8 3305 2438 361 280 32 0 chr3 22202875 22202968 -205321610 - MIR SINE MIR -61 147 52 256 327 0 19 chr3 22205015 22205119 -205319459 + L3 LINE CR1 987 1088 -489 824 190 42 53 chr3 22205330 22205593 -205318985 + L1ME LINE L1 5391 5650 -520 2220 63 7 7 chr3 22205679 22205984 -205318594 - AluY SINE Alu 0 305 1 322 196 36 63 chr3 22205989 22206114 -205318464 - MIR SINE MIR -68 140 31 659 248 41 111 chr3 22206273 22206700 -205317878 + L1ME4a LINE L1 4987 5384 -782 1888 165 0 13 chr3 22206708 22207024 -205317554 + AluJo SINE Alu 1 312 0 556 291 104 47 chr3 22207108 22207407 -205317171 + L1M4 LINE L1 58 373 -6169 295 191 20 35 chr3 22207765 22207971 -205316607 + G-rich Low_complexity Low_complexity 1 202 0 341 321 45 8 chr3 22208599 22208729 -205315849 + L1ME4a LINE L1 5658 5782 -339 2076 111 0 0 chr3 22208729 22208999 -205315579 + AluSg SINE Alu 35 304 -6 341 321 45 8 chr3 22208999 22209111 -205315467 + L1ME4a LINE L1 5782 5909 -212 188 246 116 0 chr3 22209398 22209467 -205315111 + MIR SINE MIR 48 124 -84 208 331 105 8 chr3 22209951 22210084 -205314494 - L3 LINE CR1 -223 1354 1209 913 122 0 0 chr3 22210793 22210924 -205313654 - FRAM SINE Alu -6 170 40 422 258 71 30 chr3 22211195 22211403 -205313175 + MIR SINE MIR 6 221 -41 1564 174 14 17 chr3 22211997 22212291 -205312287 - MLT1A1 LTR MaLR -65 300 8 331 272 160 16 chr3 22212403 22212528 -205312050 + MIR SINE MIR 69 211 -51 344 222 20 20 chr3 22212708 22212807 -205311771 + (CA)n Simple_repeat Simple_repeat 2 100 0 208 206 8 30 chr3 22212831 22212962 -205311616 + (CA)n Simple_repeat Simple_repeat 1 128 0 215 378 96 22 chr3 22212974 22213109 -205311469 + L3 LINE CR1 168 312 -1265 249 211 42 0 chr3 22213142 22213213 -205311365 - MLT1G3 LTR MaLR 0 595 522 309 151 0 0 chr3 22213214 22213267 -205311311 + (TTG)n Simple_repeat Simple_repeat 2 54 0 914 222 89 31 chr3 22213293 22213691 -205310887 - MLT1G3 LTR MaLR -106 436 4 336 288 283 19 chr3 22213765 22213977 -205310601 + L3 LINE CR1 430 697 -880 199 283 40 30 chr3 22217212 22217311 -205307267 - L2 LINE L2 -556 2758 2659 188 200 0 0 chr3 22219415 22219429 -205305149 + L2 LINE L2 3262 3275 -38 371 303 27 38 chr3 22219429 22219611 -205304967 + MIR3 SINE MIR 2 180 -63 1502 220 136 22 chr3 22219704 22219730 -205304848 - MLT1C LTR MaLR -7 460 438 1625 181 67 6 chr3 22219730 22220073 -205304505 + MLT1A1 LTR MaLR 2 365 0 1502 220 136 22 chr3 22220073 22220459 -205304119 - MLT1C LTR MaLR -29 438 1 306 237 16 21 chr3 22222111 22222341 -205302237 + GA-rich Low_complexity Low_complexity 1 228 0 1094 228 166 15 chr3 22224187 22224582 -205299996 - MER41B LTR ERV1 -10 560 173 208 174 0 65 chr3 22224649 22224695 -205299883 - MIR3 SINE MIR -54 154 112 527 293 11 21 chr3 22224799 22224990 -205299588 + L1ME LINE L1 3 191 -5928 1160 240 81 17 chr3 22225013 22225656 -205298922 + L1ME LINE L1 4879 5573 -576 2342 96 0 7 chr3 22226439 22226742 -205297836 + AluSq SINE Alu 1 301 -12 1291 161 10 0 chr3 22227103 22227296 -205297282 + AluJb SINE Alu 82 276 -36 326 322 88 22 chr3 22227345 22227662 -205296916 + HAL1 LINE L1 1218 1555 -952 651 276 87 54 chr3 22227960 22228013 -205296565 + L1MEd LINE L1 2125 2175 -3954 2861 161 8 0 chr3 22228013 22228511 -205296067 + L1MB8 LINE L1 5675 6176 -2 651 276 87 54 chr3 22228511 22228841 -205295737 + L1MEd LINE L1 2175 2493 -3636 837 196 0 0 chr3 22228841 22228974 -205295604 - FLAM_A SINE Alu 0 133 1 651 276 87 54 chr3 22228974 22229256 -205295322 + L1MEd LINE L1 2493 2813 -3316 524 232 0 7 chr3 22229279 22229417 -205295161 + L1MEd LINE L1 2875 3011 -3118 819 266 143 26 chr3 22229649 22230033 -205294545 + MLT1J2 LTR MaLR 1 429 -21 1992 110 25 3 chr3 22230228 22230510 -205294068 + AluJb SINE Alu 12 299 -13 2422 145 70 2 chr3 22230666 22231067 -205293511 + MSTA LTR MaLR 1 428 0 968 199 23 5 chr3 22231109 22231330 -205293248 - L1ME3A LINE L1 -213 5957 5733 667 295 79 61 chr3 22231326 22231733 -205292845 + L1MEd LINE L1 3618 4043 -2086 * 2367 111 0 0 chr3 22231733 22232039 -205292539 - AluSq SINE Alu -6 307 2 667 295 79 61 chr3 22232039 22232303 -205292275 + L1MEd LINE L1 4043 4301 -1828 412 313 36 26 chr3 22232599 22232794 -205291784 + MIR SINE MIR 59 255 -7 331 255 88 0 chr3 22233339 22233441 -205291137 - MER112 DNA MER1_type -6 254 144 1125 169 0 6 chr3 22233497 22233680 -205290898 + AluSg/x SINE Alu 118 299 -11 285 274 106 9 chr3 22233695 22233808 -205290770 + MIR SINE MIR 70 193 -69 245 241 0 0 chr3 22233874 22233928 -205290650 - MER112 DNA MER1_type -206 54 1 226 324 37 9 chr3 22234370 22234478 -205290100 - MIR SINE MIR -65 143 33 369 304 97 27 chr3 22234558 22234857 -205289721 + L2 LINE L2 2826 3145 -168 458 286 111 32 chr3 22234905 22235094 -205289484 + MIR SINE MIR 53 256 -6 3108 152 136 57 chr3 22235111 22235663 -205288915 + L1MB8 LINE L1 5302 5936 -242 2108 95 33 16 chr3 22235663 22235969 -205288609 - AluSx SINE Alu -1 311 1 3108 152 136 57 chr3 22235969 22236201 -205288377 + L1MB8 LINE L1 5936 6148 -30 634 218 155 0 chr3 22236205 22236347 -205288231 - MIR SINE MIR -86 176 13 225 378 24 8 chr3 22236486 22236613 -205287965 - MIR3 SINE MIR -42 166 38 183 329 24 0 chr3 22236659 22236741 -205287837 - MIR3 SINE MIR -43 165 82 218 235 99 25 chr3 22236746 22236827 -205287751 + MIR3 SINE MIR 115 201 -7 332 200 14 0 chr3 22237572 22237642 -205286936 - MLT1K LTR MaLR -373 215 145 227 191 103 15 chr3 22237736 22237804 -205286774 + MIR3 SINE MIR 81 154 -54 224 333 61 18 chr3 22237937 22238051 -205286527 - MIR SINE MIR -15 247 129 1439 162 50 14 chr3 22238051 22238329 -205286249 - L1MC1 LINE L1 -5 6328 6041 302 248 109 10 chr3 22238339 22238440 -205286138 - L2 LINE L2 -522 2792 2682 432 319 117 16 chr3 22238458 22238706 -205285872 - L2 LINE L2 -737 2577 2305 2071 145 0 0 chr3 22239000 22239303 -205285275 - AluSx SINE Alu -9 303 1 337 246 68 0 chr3 22239361 22239479 -205285099 - MER113 DNA MER1_type? -92 429 304 1278 157 8 58 chr3 22239482 22239724 -205284854 - AluJo SINE Alu 0 312 83 755 259 152 7 chr3 22239727 22239997 -205284581 - MER113 DNA MER1_type? -207 314 6 181 258 0 61 chr3 22240814 22240880 -205283698 - MIR SINE MIR 0 262 201 2332 90 0 0 chr3 22240896 22241185 -205283393 + AluSx SINE Alu 12 300 -12 691 294 6 6 chr3 22241197 22241377 -205283201 - MIR SINE MIR -49 213 34 189 0 0 0 chr3 22242253 22242274 -205282304 + (A)n Simple_repeat Simple_repeat 1 21 0 417 286 16 8 chr3 22242700 22242826 -205281752 - L3 LINE CR1 -71 1506 1380 495 262 84 21 chr3 22242846 22243037 -205281541 - L2 LINE L2 -64 3249 3047 184 323 71 0 chr3 22243035 22243134 -205281444 - L3 LINE CR1 -193 1384 1279 * 329 360 91 28 chr3 22243262 22243515 -205281063 - L3 LINE CR1 -563 1014 746 627 291 70 62 chr3 22243566 22244304 -205280274 + L1ME4a LINE L1 5255 6013 -108 346 278 103 0 chr3 22244809 22244935 -205279643 + MER117 DNA MER1_type 4 142 -55 345 320 203 0 chr3 22245000 22245153 -205279425 - MER5A DNA MER1_type -2 187 4 259 265 271 0 chr3 22245214 22245365 -205279213 - MIR SINE MIR -10 252 61 233 299 23 23 chr3 22245936 22246023 -205278555 + MIR SINE MIR 62 148 -114 741 223 36 21 chr3 22246024 22246217 -205278361 - L2 LINE L2 0 3313 3118 323 172 16 0 chr3 22246556 22246620 -205277958 + LTR16A1 LTR ERVL 65 129 -328 446 244 62 12 chr3 22246674 22246834 -205277744 + LTR16A1 LTR ERVL 226 393 -64 512 218 0 0 chr3 22246910 22246997 -205277581 - MER81 DNA DNA -22 92 6 190 310 212 9 chr3 22247027 22247140 -205277438 - L2 LINE L2 0 3313 3178 202 189 0 0 chr3 22247372 22247409 -205277169 + MIR SINE MIR 103 139 -123 377 220 70 20 chr3 22247587 22247687 -205276891 - MIR SINE MIR -98 164 60 876 274 29 4 chr3 22247833 22248074 -205276504 + MIR SINE MIR 13 259 -3 255 179 54 0 chr3 22248104 22248160 -205276418 + L1ME LINE L1 5714 5772 -349 667 291 49 4 chr3 22248168 22248415 -205276163 + L1M4 LINE L1 4722 4979 -1167 182 277 62 0 chr3 22249142 22249207 -205275371 + MIR SINE MIR 106 174 -88 207 262 16 0 chr3 22249223 22249284 -205275294 - L2 LINE L2 -1 3271 3210 654 219 34 51 chr3 22249284 22249462 -205275116 + MER45A DNA AcHobo 3 177 -1 313 277 143 0 chr3 22249729 22249841 -205274737 + MIR SINE MIR 17 144 -118 183 238 0 0 chr3 22250212 22250254 -205274324 - L2 LINE L2 -15 3298 3257 401 355 24 5 chr3 22250267 22250478 -205274100 - MIR SINE MIR 0 262 48 247 242 275 0 chr3 22251720 22251840 -205272738 + MIR SINE MIR 106 258 -4 906 266 98 21 chr3 22251910 22252377 -205272201 - L2 LINE L2 -7 3306 2804 266 324 7 47 chr3 22252707 22252855 -205271723 + L2 LINE L2 2651 2792 -522 259 374 113 4 chr3 22253992 22254230 -205270348 + L2 LINE L2 2915 3178 -94 481 269 46 0 chr3 22254252 22254382 -205270196 - MIR SINE MIR -68 194 59 221 280 7 126 chr3 22255066 22255209 -205269369 - MIR SINE MIR -11 251 126 684 254 29 57 chr3 22255253 22255462 -205269116 + MIR SINE MIR 59 261 -1 180 178 267 0 chr3 22255464 22255509 -205269069 - MIR SINE MIR -68 140 84 259 200 0 0 chr3 22256112 22256162 -205268416 + L2 LINE L2 3264 3313 0 421 294 104 6 chr3 22256222 22256385 -205268193 + MIR SINE MIR 3 181 -81 390 254 123 0 chr3 22256919 22257033 -205267545 + MIR SINE MIR 93 220 -42 23 0 0 0 chr3 22257544 22257567 -205267011 + AT_rich Low_complexity Low_complexity 1 23 0 380 293 0 17 chr3 22257654 22257835 -205266743 + (CCA)n Simple_repeat Simple_repeat 1 178 0 520 298 6 6 chr3 22257940 22258118 -205266460 + (CCA)n Simple_repeat Simple_repeat 3 180 0 223 246 33 0 chr3 22258249 22258310 -205266268 - MIR3 SINE MIR -21 187 125 181 288 0 38 chr3 22258342 22258422 -205266156 + L2 LINE L2 2898 2974 -298 287 167 0 0 chr3 22258670 22258724 -205265854 + L2 LINE L2 3012 3065 -248 252 132 309 0 chr3 22258743 22258811 -205265767 - MER5A DNA MER1_type -34 155 67 239 107 0 53 chr3 22259315 22259390 -205265188 + (CCCCCG)n Simple_repeat Simple_repeat 3 73 0 42 36 0 0 chr3 22259441 22259497 -205265081 + GC_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 22259551 22259573 -205265005 + GC_rich Low_complexity Low_complexity 1 22 0 408 40 0 0 chr3 22260727 22260777 -205263801 + (TG)n Simple_repeat Simple_repeat 2 51 0 490 275 186 31 chr3 22261403 22261596 -205262982 + MIR SINE MIR 40 262 0 * 699 319 64 8 chr3 22261580 22261815 -205262763 - MIR SINE MIR 0 262 15 482 313 28 11 chr3 22261892 22262071 -205262507 - MIR SINE MIR -80 182 1 539 244 7 7 chr3 22262376 22262511 -205262067 - MIR3 SINE MIR -50 158 24 1958 256 136 26 chr3 22263253 22264294 -205260284 + L2 LINE L2 2087 3308 -5 266 316 35 18 chr3 22264544 22264658 -205259920 + MIR SINE MIR 32 147 -61 531 198 182 27 chr3 22265156 22265343 -205259235 - MIR SINE MIR -16 246 31 1343 166 42 7 chr3 22265694 22265924 -205258654 + MER33 DNA MER1_type 1 244 -2341 2170 138 0 0 chr3 22265924 22266221 -205258357 - AluSq SINE Alu -16 297 1 1343 166 42 7 chr3 22266221 22266274 -205258304 + MER33 DNA MER1_type 244 294 -30 272 279 0 0 chr3 22266731 22266799 -205257779 + L2 LINE L2 2991 3058 -255 392 282 5 38 chr3 22270352 22270519 -205254059 + MIR3 SINE MIR 3 169 -63 2533 88 0 0 chr3 22270545 22270853 -205253725 + AluSc SINE Alu 1 308 -1 511 364 21 4 chr3 22271995 22272231 -205252347 - L3 LINE CR1 -87 1490 1251 451 314 90 0 chr3 22272241 22272397 -205252181 - MIR3 SINE MIR -6 202 33 344 282 61 8 chr3 22272425 22272556 -205252022 - MER91C DNA MER1_type -2 138 1 233 236 14 42 chr3 22272668 22272740 -205251838 - MIR SINE MIR -19 243 174 241 225 166 33 chr3 22273261 22273375 -205251203 + MIR3 SINE MIR 39 167 -41 1097 222 138 11 chr3 22273401 22273757 -205250821 + MER113 DNA MER1_type? 46 446 -75 1540 151 6 130 chr3 22274049 22274394 -205250184 + AluJo SINE Alu 1 302 -10 330 169 0 0 chr3 22274957 22275022 -205249556 + CT-rich Low_complexity Low_complexity 1 65 0 663 261 174 5 chr3 22275155 22275373 -205249205 + MIR SINE MIR 8 262 0 289 346 33 26 chr3 22275779 22275967 -205248611 - MIR3 SINE MIR -54 154 12 1789 58 31 4 chr3 22276008 22276233 -205248345 - AluY SINE Alu -2 309 79 1838 128 103 0 chr3 22277550 22277823 -205246755 - AluSx SINE Alu -11 301 1 792 267 142 31 chr3 22279530 22279953 -205244625 - L2 LINE L2 0 3313 2844 638 329 31 13 chr3 22281004 22281232 -205243346 - MIR SINE MIR -14 248 17 187 295 115 0 chr3 22281317 22281395 -205243183 - MIR SINE MIR -67 141 55 231 247 79 56 chr3 22282199 22282288 -205242290 + L3 LINE CR1 1378 1468 -109 1065 191 17 33 chr3 22282948 22283189 -205241389 + MIR SINE MIR 7 243 -19 287 258 75 11 chr3 22283651 22283744 -205240834 - MIR SINE MIR -54 208 110 2101 126 0 7 chr3 22283945 22284259 -205240319 + AluSx SINE Alu 1 312 0 236 259 49 5 chr3 22284731 22284810 -205239768 - MIR SINE MIR -72 136 47 209 200 18 0 chr3 22285356 22285411 -205239167 - MIR SINE MIR -57 151 96 190 313 36 51 chr3 22285611 22285806 -205238772 - L2 LINE L2 -244 3028 2837 181 319 106 0 chr3 22286506 22286619 -205237959 + MIR3 SINE MIR 66 190 -18 1972 231 102 26 chr3 22286623 22287203 -205237375 - MLT1E2 LTR MaLR -2 624 1 916 239 40 78 chr3 22287219 22287541 -205237037 - MLT1E2-int LTR MaLR -2 1369 1060 305 298 32 11 chr3 22287941 22288035 -205236543 + MIR SINE MIR 91 186 -76 2329 71 7 3 chr3 22288380 22288696 -205235882 + AluY SINE Alu 1 317 0 1451 159 6 130 chr3 22288924 22289269 -205235309 + AluJo SINE Alu 1 302 -10 330 169 0 0 chr3 22289832 22289897 -205234681 + CT-rich Low_complexity Low_complexity 1 65 0 663 261 174 5 chr3 22290030 22290248 -205234330 + MIR SINE MIR 8 262 0 362 352 34 12 chr3 22290654 22290839 -205233739 - MIR3 SINE MIR -54 154 12 2468 87 0 6 chr3 22290880 22291192 -205233386 - AluSx SINE Alu -2 310 1 1175 226 25 31 chr3 22291978 22292301 -205232277 - L1ME LINE L1 -576 5573 5253 932 243 82 3 chr3 22292316 22292621 -205231957 - L1ME LINE L1 -922 5207 4879 552 293 11 21 chr3 22292644 22292835 -205231743 - L1ME LINE L1 -5928 191 3 201 194 0 0 chr3 22292939 22292975 -205231603 + MIR SINE MIR 112 147 -61 1129 222 166 15 chr3 22293052 22293447 -205231131 + MER41B LTR ERV1 173 476 -10 1748 202 90 12 chr3 22294216 22294626 -205229952 + MER45B DNA AcHobo 205 646 -394 340 411 45 25 chr3 22294633 22295142 -205229436 + L1M2 LINE L1 10 528 -6321 457 186 0 12 chr3 22295179 22295265 -205229313 + L1 LINE L1 4169 4253 -1893 201 229 42 0 chr3 22297772 22297820 -205226758 + L2 LINE L2 3204 3253 -19 2297 91 0 29 chr3 22298257 22298565 -205226013 - AluSx SINE Alu -13 299 1 443 244 85 30 chr3 22298571 22298738 -205225840 - MIR SINE MIR -52 210 37 459 0 0 0 chr3 22298788 22298839 -205225739 + (TA)n Simple_repeat Simple_repeat 2 52 0 278 291 12 0 chr3 22298839 22298925 -205225653 - MER5A DNA MER1_type -53 136 50 583 309 22 6 chr3 22299185 22299366 -205225212 + MIR SINE MIR 38 221 -41 313 293 93 0 chr3 22301547 22301687 -205222891 + MIR SINE MIR 108 260 -2 496 273 79 32 chr3 22301773 22301989 -205222589 - MIR SINE MIR -21 241 16 774 240 57 21 chr3 22302123 22302315 -205222263 - MIR SINE MIR -44 218 20 220 329 0 24 chr3 22302415 22302497 -205222081 + MIR3 SINE MIR 77 156 -52 21 71 0 0 chr3 22303217 22303259 -205221319 + AT_rich Low_complexity Low_complexity 1 42 0 235 213 16 66 chr3 22303265 22303326 -205221252 - MER69 DNA AcHobo -2449 77 20 183 143 18 89 chr3 22303333 22303389 -205221189 - L2 LINE L2 -217 3055 3004 449 284 12 15 chr3 22304039 22304246 -205220332 + MIR SINE MIR 78 253 -9 300 246 354 6 chr3 22304261 22304436 -205220142 + MIR SINE MIR 21 256 -6 184 143 0 0 chr3 22304806 22304834 -205219744 - MIR SINE MIR -63 145 118 202 255 39 0 chr3 22305298 22305349 -205219229 - L2 LINE L2 -211 3061 3009 396 172 172 10 chr3 22305595 22305694 -205218884 - MIR3 SINE MIR -49 159 45 748 248 9 51 chr3 22305801 22306015 -205218563 - MIR SINE MIR -56 206 2 3450 159 56 21 chr3 22306462 22307177 -205217401 + L1MB7 LINE L1 5445 6184 0 279 0 0 0 chr3 22308204 22308235 -205216343 + (T)n Simple_repeat Simple_repeat 1 31 0 288 227 136 0 chr3 22308664 22308730 -205215848 - MIR SINE MIR -107 155 81 1858 163 7 13 chr3 22308935 22309283 -205215295 - AluJo SINE Alu 0 312 1 7207 130 16 28 chr3 22309288 22311704 -205212874 - L1MA5A LINE L1 0 6297 3895 1543 169 41 37 chr3 22311721 22312016 -205212562 - AluJb SINE Alu -12 300 5 555 234 130 61 chr3 22312371 22312602 -205211976 - MIR SINE MIR -3 259 13 282 262 24 12 chr3 22312803 22312887 -205211691 + (TGGG)n Simple_repeat Simple_repeat 2 86 0 558 133 0 0 chr3 22312910 22313000 -205211578 + (TGGA)n Simple_repeat Simple_repeat 2 91 0 226 213 40 53 chr3 22313124 22313199 -205211379 + L2 LINE L2 3198 3271 -1 1066 130 44 143 chr3 22313686 22313840 -205210738 - L1MA7 LINE L1 -4 6287 6183 2019 156 0 9 chr3 22313840 22314155 -205210423 + AluSx SINE Alu 1 312 0 1066 130 44 143 chr3 22314155 22314325 -205210253 - L1MA7 LINE L1 -108 6183 5998 22 0 0 0 chr3 22315210 22315232 -205209346 + AT_rich Low_complexity Low_complexity 1 22 0 1564 205 0 17 chr3 22315259 22315556 -205209022 + AluJo SINE Alu 3 294 -18 250 284 193 0 chr3 22315878 22315966 -205208612 - MIR SINE MIR -139 123 19 346 329 80 13 chr3 22316412 22316637 -205207941 - L2 LINE L2 -557 2757 2518 196 260 151 0 chr3 22317825 22317898 -205206680 - L2 LINE L2 -559 2755 2672 357 268 21 10 chr3 22317959 22318056 -205206522 + L2 LINE L2 3168 3265 -7 218 240 38 0 chr3 22318482 22318571 -205206007 - L2 LINE L2 -326 2946 2852 246 167 241 0 chr3 22319141 22319195 -205205383 + MIR SINE MIR 86 152 -110 261 277 9 54 chr3 22320038 22320150 -205204428 + C-rich Low_complexity Low_complexity 6 112 0 740 257 32 18 chr3 22320161 22320379 -205204199 - MIR SINE MIR -29 233 13 210 293 146 16 chr3 22320760 22320883 -205203695 + MIR SINE MIR 121 259 -3 500 259 80 20 chr3 22321049 22321252 -205203326 + MIR SINE MIR 19 236 -26 470 347 77 4 chr3 22321849 22322097 -205202481 - L1MC4a LINE L1 -1943 5865 5600 386 222 52 185 chr3 22323349 22323578 -205201000 - L2 LINE L2 -4 3309 3051 2205 117 0 0 chr3 22323578 22323901 -205200677 + AluY SINE Alu 1 323 0 386 222 52 185 chr3 22323901 22323990 -205200588 - L2 LINE L2 -262 3051 2952 3362 195 11 1 chr3 22323990 22324646 -205199932 - L1MB3 LINE L1 -7 6176 5515 386 222 52 185 chr3 22324646 22324882 -205199696 - L2 LINE L2 -361 2952 2826 355 319 226 12 chr3 22325575 22325898 -205198680 + L2 LINE L2 2922 3313 0 294 265 191 34 chr3 22326484 22326631 -205197947 + MER5A DNA MER1_type 11 180 -9 4784 172 14 43 chr3 22326900 22327843 -205196735 - MER49 LTR ERV1 -2 921 7 205 321 50 13 chr3 22327916 22328075 -205196503 - L2 LINE L2 -209 3063 2899 2310 91 24 0 chr3 22328289 22328587 -205195991 - AluSx SINE Alu -7 305 1 1534 193 22 19 chr3 22328593 22328802 -205195776 + L1MB1 LINE L1 5736 5948 -241 1692 126 103 19 chr3 22328802 22329073 -205195505 + AluJo SINE Alu 1 294 -18 1534 193 22 19 chr3 22329073 22329174 -205195404 + L1MB1 LINE L1 5948 6047 -142 244 323 0 0 chr3 22329211 22329276 -205195302 - MIR SINE MIR -108 100 36 1625 196 50 12 chr3 22330881 22331087 -205193491 - Charlie1 DNA MER1_type 0 2761 2564 243 0 0 0 chr3 22331087 22331114 -205193464 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1625 196 50 12 chr3 22331114 22331311 -205193267 - Charlie1 DNA MER1_type -197 2564 2343 313 274 89 15 chr3 22332088 22332223 -205192355 - MIR3 SINE MIR -59 149 5 530 271 43 24 chr3 22332296 22332332 -205192246 - L2 LINE L2 -182 3131 3097 760 206 21 82 chr3 22332332 22332565 -205192013 + MER20 DNA MER1_type 1 219 0 530 271 43 24 chr3 22332565 22332735 -205191843 - L2 LINE L2 -216 3097 2921 312 316 33 33 chr3 22332773 22332925 -205191653 - MIR SINE MIR -110 152 1 512 247 64 82 chr3 22333061 22333291 -205191287 - MIR SINE MIR 0 262 36 2118 82 67 11 chr3 22333291 22333573 -205191005 - AluSg SINE Alu -12 298 1 512 247 64 82 chr3 22333573 22333609 -205190969 - MIR SINE MIR -226 36 1 209 33 33 0 chr3 22334132 22334162 -205190416 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 476 288 157 36 chr3 22334187 22334461 -205190117 - L2 LINE L2 -50 3222 2916 447 235 145 66 chr3 22334545 22334631 -205189947 - MIR SINE MIR -17 245 167 1934 157 0 37 chr3 22334631 22334955 -205189623 + AluJo SINE Alu 1 312 0 447 235 145 66 chr3 22334955 22335034 -205189544 - MIR SINE MIR -95 167 67 230 238 0 16 chr3 22335658 22335721 -205188857 + (TG)n Simple_repeat Simple_repeat 1 62 0 336 228 129 0 chr3 22336294 22336395 -205188183 - MIR SINE MIR -65 143 30 2415 94 0 0 chr3 22336982 22337281 -205187297 + AluSx SINE Alu 1 299 -13 691 213 71 30 chr3 22337726 22337895 -205186683 + MER58C DNA MER1_type 40 215 0 268 317 19 0 chr3 22337955 22338059 -205186519 + (TCCA)n Simple_repeat Simple_repeat 1 106 0 245 208 13 0 chr3 22338085 22338162 -205186416 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 220 324 123 39 chr3 22338418 22338622 -205185956 - L2 LINE L2 -223 3049 2829 413 275 170 5 chr3 22338937 22339137 -205185441 + L2 LINE L2 2804 3036 -277 974 199 36 55 chr3 22339137 22339336 -205185242 - MLT1G1 LTR MaLR -26 557 367 1977 174 79 15 chr3 22339336 22339739 -205184839 + LTR3 LTR ERVK 1 429 -3 1856 174 67 11 chr3 22339752 22340109 -205184469 - LTR3 LTR ERVK -55 377 1 1861 226 10 13 chr3 22340112 22340501 -205184077 - MLT1G1 LTR MaLR -207 388 1 731 290 74 30 chr3 22340521 22340859 -205183719 - MLT1J LTR MaLR 0 511 159 318 256 157 31 chr3 22340908 22341163 -205183415 - MLT1H LTR MaLR -120 289 40 1527 221 62 44 chr3 22341272 22341769 -205182809 - L1M4 LINE L1 -3186 2960 2455 384 301 90 8 chr3 22341770 22341903 -205182675 + L2 LINE L2 3127 3270 -2 960 161 56 0 chr3 22341963 22342124 -205182454 + FAM SINE Alu 1 170 -5 289 324 110 45 chr3 22342159 22342449 -205182129 - L2 LINE L2 -61 3211 2903 1835 158 17 24 chr3 22342450 22342748 -205181830 + AluJo SINE Alu 1 296 -16 223 271 0 0 chr3 22342748 22342796 -205181782 - MER5B DNA MER1_type -54 124 77 184 379 68 15 chr3 22343220 22343352 -205181226 - L2 LINE L2 -157 3115 2977 833 191 21 46 chr3 22343399 22343593 -205180985 + MER5A DNA MER1_type 1 189 0 1906 250 149 16 chr3 22343764 22344544 -205180034 - L1ME3 LINE L1 -72 6090 5204 312 282 177 62 chr3 22344545 22344556 -205180022 + L2 LINE L2 2862 2870 -402 472 212 0 9 chr3 22344556 22344669 -205179909 - L1MB8 LINE L1 0 6178 6067 312 282 177 62 chr3 22344669 22345028 -205179550 + L2 LINE L2 2870 3271 -1 357 228 79 20 chr3 22345485 22345586 -205178992 - MIR SINE MIR -108 154 48 363 203 0 0 chr3 22346445 22346524 -205178054 + CT-rich Low_complexity Low_complexity 1 79 0 1802 171 26 16 chr3 22346760 22347065 -205177513 - AluJb SINE Alu -4 308 1 183 321 43 112 chr3 22347065 22347102 -205177476 + L3 LINE CR1 1369 1407 -170 2364 112 0 3 chr3 22347102 22347414 -205177164 + AluSq SINE Alu 1 311 -2 183 321 43 112 chr3 22347414 22347563 -205177015 + L3 LINE CR1 1407 1542 -35 4934 156 24 37 chr3 22347733 22347902 -205176676 - L1MA4 LINE L1 0 6300 6130 197 33 33 0 chr3 22347902 22347932 -205176646 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1745 177 18 3 chr3 22347932 22348214 -205176364 - AluJo SINE Alu -26 286 1 4934 156 24 37 chr3 22348214 22348309 -205176269 - L1MA4 LINE L1 -169 6131 6036 2332 111 0 9 chr3 22348309 22348624 -205175954 - AluSx SINE Alu 0 312 1 4934 156 24 37 chr3 22348624 22349072 -205175506 - L1MA4 LINE L1 -264 6036 5584 1649 131 32 12 chr3 22349072 22349324 -205175254 - AluJo SINE Alu -2 310 54 4934 156 24 37 chr3 22349324 22350106 -205174472 - L1MA4 LINE L1 -716 5584 4819 1631 184 28 0 chr3 22350128 22350410 -205174168 - AluJb SINE Alu 0 312 23 3308 144 15 7 chr3 22350426 22351037 -205173541 + L1 LINE L1 4216 4831 -1315 2400 94 0 0 chr3 22351038 22351337 -205173241 - AluSp SINE Alu -14 299 1 25 0 0 0 chr3 22351342 22351367 -205173211 + AT_rich Low_complexity Low_complexity 1 25 0 464 284 88 7 chr3 22352302 22352450 -205172128 - MIR SINE MIR -87 175 16 347 296 138 7 chr3 22353674 22354023 -205170555 + L2 LINE L2 1857 2296 -1018 1370 269 122 2 chr3 22354153 22354570 -205170008 - L2 LINE L2 0 3313 2847 243 248 284 18 chr3 22354656 22354765 -205169813 + L2 LINE L2 3133 3270 -2 328 260 30 60 chr3 22355375 22355511 -205169067 - MIR SINE MIR -44 164 32 196 232 116 54 chr3 22355744 22355856 -205168722 + MIR SINE MIR 34 152 -56 345 343 35 12 chr3 22355863 22356032 -205168546 + MER5A DNA MER1_type 16 188 -1 257 340 0 0 chr3 22356182 22356276 -205168302 + MER117 DNA MER1_type 68 161 -36 283 329 100 68 chr3 22356364 22356566 -205168012 - L2 LINE L2 -18 3254 3060 2349 116 0 0 chr3 22356566 22356867 -205167711 + AluSx SINE Alu 1 301 -11 283 329 100 68 chr3 22356867 22357074 -205167504 - L2 LINE L2 -212 3060 2832 788 175 31 6 chr3 22357640 22357800 -205166778 - L1MB3 LINE L1 -62 6121 5958 502 200 67 7 chr3 22357811 22357921 -205166657 - L1MC3 LINE L1 0 7785 7664 198 0 0 0 chr3 22357921 22357943 -205166635 + (TTA)n Simple_repeat Simple_repeat 3 24 0 502 200 67 7 chr3 22357943 22357967 -205166611 - L1MC3 LINE L1 -121 7664 7643 * 2930 28 0 6 chr3 22357945 22358301 -205166277 - L1PA3 LINE L1 -26 6129 5776 * 4778 200 28 27 chr3 22358283 22359397 -205165181 - L1MC3 LINE L1 -115 7670 6556 632 164 115 8 chr3 22359397 22359519 -205165059 - FLAM_C SINE Alu -7 136 2 182 116 23 0 chr3 22359520 22359563 -205165015 + T-rich Low_complexity Low_complexity 1 44 0 595 139 139 0 chr3 22359564 22359693 -205164885 - L1MC3 LINE L1 -1224 6561 6415 * 655 263 60 42 chr3 22359686 22360017 -205164561 - L1MCc LINE L1 -4750 2372 2036 * 1393 253 75 52 chr3 22360015 22360798 -205163780 - L1MCc LINE L1 -4887 1536 920 1637 241 32 5 chr3 22361116 22361523 -205163055 - L1MCc LINE L1 -5988 435 18 795 127 25 45 chr3 22363012 22363169 -205161409 - Ricksha DNA DNA -1 3253 3100 2158 93 21 4 chr3 22363171 22363482 -205161096 + AluSg SINE Alu 1 316 0 324 161 0 0 chr3 22363488 22363550 -205161028 + (TTCA)n Simple_repeat Simple_repeat 4 65 0 285 29 0 0 chr3 22363668 22363702 -205160876 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2124 90 32 0 chr3 22363702 22363979 -205160599 - AluSp SINE Alu -26 287 2 3303 143 11 55 chr3 22363979 22364461 -205160117 - Ricksha DNA DNA -145 3106 2657 2297 105 6 22 chr3 22364461 22364774 -205159804 - AluSg SINE Alu 0 310 3 3303 143 11 55 chr3 22364774 22364926 -205159652 - Ricksha DNA DNA -594 2657 2500 1114 190 22 9 chr3 22364924 22365132 -205159446 - Ricksha DNA DNA -844 410 206 * 504 244 96 0 chr3 22365132 22365247 -205159331 - FLAM_A SINE Alu -7 126 1 1114 190 22 9 chr3 22365247 22365352 -205159226 - Ricksha DNA DNA -1048 206 1 318 282 81 27 chr3 22365881 22366030 -205158548 - MIR3 SINE MIR -36 172 16 240 260 221 31 chr3 22366346 22366473 -205158105 - L2 LINE L2 -14 3258 3108 331 321 50 0 chr3 22366624 22366764 -205157814 - L2 LINE L2 -228 3044 2898 244 286 143 17 chr3 22367211 22367330 -205157248 - L3 LINE CR1 -50 1527 1394 199 266 230 44 chr3 22367311 22367424 -205157154 - L2 LINE L2 0 3272 3139 * 2171 122 0 3 chr3 22367467 22367762 -205156816 + AluSg SINE Alu 1 294 -16 226 292 179 36 chr3 22367805 22368000 -205156578 + MIR SINE MIR 36 258 -4 315 261 14 11 chr3 22368194 22368299 -205156279 + MIR SINE MIR 40 147 -61 311 321 42 63 chr3 22369430 22369620 -205154958 + MIR SINE MIR 60 245 -17 543 235 37 0 chr3 22369660 22369796 -205154782 + MER58A DNA MER1_type 1 141 0 201 326 54 22 chr3 22370923 22371015 -205153563 - MIR SINE MIR -118 144 50 360 242 126 0 chr3 22371139 22371234 -205153344 - L2 LINE L2 -2 3311 3205 1739 256 24 28 chr3 22371264 22371796 -205152782 - L1ME2 LINE L1 -9 6155 5626 2196 154 104 9 chr3 22372368 22372821 -205151757 - L1MB3 LINE L1 0 6183 5688 1953 164 19 43 chr3 22374011 22374049 -205150529 - MLT1A1 LTR MaLR 0 365 328 2545 68 0 0 chr3 22374049 22374358 -205150220 + AluY SINE Alu 1 309 -2 1953 164 19 43 chr3 22374358 22374691 -205149887 - MLT1A1 LTR MaLR -37 328 3 844 159 0 0 chr3 22375091 22375217 -205149361 + FLAM_C SINE Alu 5 130 -3 269 241 111 28 chr3 22375461 22375569 -205149009 - MIR SINE MIR -144 118 2 242 239 42 14 chr3 22375592 22375663 -205148915 - L2 LINE L2 -181 3091 3019 186 286 83 24 chr3 22376366 22376450 -205148128 - MIR SINE MIR -70 192 104 220 229 33 16 chr3 22379033 22379094 -205145484 + CT-rich Low_complexity Low_complexity 5 66 0 2424 88 0 7 chr3 22379532 22379840 -205144738 + AluSc SINE Alu 1 306 -3 393 277 125 40 chr3 22379904 22380128 -205144450 - L1MC4a LINE L1 -1757 6051 5809 388 301 15 29 chr3 22380132 22380268 -205144310 - MIR SINE MIR -115 147 14 804 125 58 0 chr3 22382056 22382176 -205142402 + AluJb SINE Alu 1 127 -185 261 0 0 0 chr3 22382177 22382206 -205142372 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1700 174 6 35 chr3 22382462 22382644 -205141934 - AluJo SINE Alu -5 307 136 2529 81 3 0 chr3 22382644 22382951 -205141627 - AluSc SINE Alu -1 308 1 1700 174 6 35 chr3 22382951 22383084 -205141494 - AluJo SINE Alu -176 136 1 25 51 0 0 chr3 22383097 22383136 -205141442 + AT_rich Low_complexity Low_complexity 1 39 0 2085 141 7 0 chr3 22383175 22383473 -205141105 + AluSx SINE Alu 1 300 -12 4235 203 82 39 chr3 22383632 22385039 -205139539 - L1ME2 LINE L1 0 6334 4569 1631 136 38 38 chr3 22385039 22385326 -205139252 + AluSx SINE Alu 11 297 -15 4235 203 82 39 chr3 22385326 22386022 -205138556 - L1ME2 LINE L1 -1765 4569 3905 21 0 0 0 chr3 22386044 22386065 -205138513 + AT_rich Low_complexity Low_complexity 1 21 0 679 225 0 0 chr3 22386080 22386200 -205138378 - FLAM_A SINE Alu -22 120 1 459 242 187 9 chr3 22386578 22386768 -205137810 + MIR SINE MIR 36 253 -9 2296 88 0 0 chr3 22386812 22387095 -205137483 - AluSx SINE Alu -29 283 1 1861 174 24 0 chr3 22390239 22390533 -205134045 + AluJo SINE Alu 1 301 -11 1474 159 13 8 chr3 22390903 22391142 -205133436 + AluJo SINE Alu 55 294 -18 2018 139 27 3 chr3 22391550 22391851 -205132727 - AluJb SINE Alu 0 312 5 432 270 88 0 chr3 22392636 22392773 -205131805 - MIR SINE MIR -51 211 63 1324 117 68 9 chr3 22393332 22393554 -205131024 - MER46A DNA MER2_type 0 236 2 245 301 19 39 chr3 22394036 22394139 -205130439 - MER5B DNA MER1_type -69 109 9 268 308 10 39 chr3 22394385 22394489 -205130089 - MER5B DNA MER1_type -69 109 9 243 156 429 0 chr3 22396039 22396116 -205128462 + MLT1G3 LTR MaLR 220 329 -201 241 243 57 0 chr3 22396186 22396256 -205128322 + MLT1G3 LTR MaLR 520 593 -2 349 303 178 59 chr3 22396257 22396735 -205127843 + HAL1 LINE L1 30 564 -1943 332 326 62 31 chr3 22397305 22397434 -205127144 + MIR SINE MIR 64 196 -66 1639 155 38 35 chr3 22397501 22397791 -205126787 - AluJb SINE Alu -21 291 1 261 262 204 0 chr3 22398480 22398583 -205125995 - L2 LINE L2 -3 3269 3146 280 320 19 10 chr3 22398753 22398856 -205125722 + MER5B DNA MER1_type 1 104 -74 217 330 85 9 chr3 22399303 22399409 -205125169 + MIR SINE MIR 10 123 -139 889 111 0 76 chr3 22399627 22399741 -205124837 + AluJo/FLAM SINE Alu 1 103 -199 2050 113 20 10 chr3 22399741 22400034 -205124544 - AluSq SINE Alu -17 296 1 889 111 0 76 chr3 22400034 22400063 -205124515 + AluJo/FLAM SINE Alu 103 133 -169 8411 97 60 11 chr3 22400134 22401352 -205123226 - HSMAR1 DNA Mariner 0 1287 11 21 0 0 0 chr3 22402497 22402518 -205122060 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 22402595 22402619 -205121959 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 22402667 22402692 -205121886 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 22402741 22402865 -205121713 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 22402875 22402923 -205121655 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 22402986 22403032 -205121546 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 22403088 22403109 -205121469 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 22403119 22403161 -205121417 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 22403607 22403692 -205120886 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 482 288 250 16 chr3 22404174 22404490 -205120088 - L2 LINE L2 -52 3261 2872 262 191 101 45 chr3 22404713 22404802 -205119776 - L2 LINE L2 -5 3267 3174 292 51 0 26 chr3 22404818 22404881 -205119697 - Alu SINE Alu 0 309 248 535 265 118 6 chr3 22404999 22405169 -205119409 + MIR SINE MIR 74 262 0 421 274 236 27 chr3 22405599 22405858 -205118720 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 22406454 22406538 -205118040 + AT_rich Low_complexity Low_complexity 1 84 0 2312 76 16 0 chr3 22406803 22407106 -205117472 - AluY SINE Alu -2 309 2 181 277 0 21 chr3 22407220 22407267 -205117311 + MIR3 SINE MIR 109 154 -54 222 254 149 0 chr3 22407547 22407614 -205116964 - L3 LINE CR1 -4 1573 1497 2419 74 0 3 chr3 22408675 22408973 -205115605 + AluSg SINE Alu 1 297 -13 34 42 0 0 chr3 22409305 22409353 -205115225 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 22409390 22409449 -205115129 + AT_rich Low_complexity Low_complexity 1 59 0 1296 230 103 59 chr3 22409469 22409896 -205114682 + L1ME3A LINE L1 5671 6122 -48 2000 132 3 3 chr3 22409896 22410192 -205114386 - AluSx SINE Alu -16 296 1 1296 230 103 59 chr3 22410192 22410238 -205114340 + L1ME3A LINE L1 6122 6165 -5 355 292 65 19 chr3 22410576 22410730 -205113848 + MIR SINE MIR 29 189 -73 2148 117 13 3 chr3 22411592 22411901 -205112677 - AluSp SINE Alu -1 312 1 181 290 151 0 chr3 22412058 22412151 -205112427 - MIR SINE MIR 0 262 156 317 128 0 0 chr3 22412646 22412693 -205111885 - FLAM SINE Alu -2 131 85 418 335 80 66 chr3 22412752 22413340 -205111238 + L2 LINE L2 2576 3251 -21 2289 84 0 0 chr3 22413757 22414042 -205110536 + AluSc SINE Alu 1 285 -24 806 280 52 70 chr3 22414790 22415372 -205109206 + L1M4 LINE L1 4698 5268 -878 180 0 0 0 chr3 22417717 22417737 -205106841 + (T)n Simple_repeat Simple_repeat 1 20 0 251 304 51 13 chr3 22417918 22417997 -205106581 - L2 LINE L2 -5 3267 3186 490 288 74 6 chr3 22418318 22418481 -205106097 - MIR SINE MIR -74 188 15 2178 59 7 7 chr3 22418523 22418796 -205105782 - AluY SINE Alu -3 308 36 23 0 0 0 chr3 22419043 22419066 -205105512 + AT_rich Low_complexity Low_complexity 1 23 0 4681 137 62 32 chr3 22419117 22419567 -205105011 - MER6 DNA MER2_type -4 861 375 2278 79 6 29 chr3 22419567 22419883 -205104695 - AluY SINE Alu -2 309 1 4681 137 62 32 chr3 22419883 22420238 -205104340 - MER6 DNA MER2_type -490 375 32 216 0 0 0 chr3 22420584 22420608 -205103970 + (A)n Simple_repeat Simple_repeat 1 24 0 2213 100 0 22 chr3 22420711 22421030 -205103548 - AluSq SINE Alu -1 312 1 1054 141 5 32 chr3 22421469 22421654 -205102924 + AluJo SINE Alu 108 287 -25 493 227 0 0 chr3 22421874 22421962 -205102616 + MIR SINE MIR 1 88 -174 1589 248 22 2 chr3 22421962 22422426 -205102152 - L1M4 LINE L1 -2533 3613 3141 651 183 25 0 chr3 22422427 22422547 -205102031 + L1M4 LINE L1 5428 5550 -634 8325 11 5 1 chr3 22422791 22424206 -205100372 + L1PA3 LINE L1 4734 6151 -4 2238 114 10 0 chr3 22424302 22424601 -205099977 - AluSg SINE Alu -8 302 1 296 265 117 85 chr3 22425093 22425316 -205099262 - HAL1 LINE L1 0 2507 2278 4173 132 54 36 chr3 22425376 22425897 -205098681 - L1MB3 LINE L1 -2 6181 5640 2061 148 53 31 chr3 22425897 22426175 -205098403 + MER47A DNA MER2_type 1 290 -2033 2300 109 3 0 chr3 22426175 22426478 -205098100 - AluSx SINE Alu -8 304 1 2061 148 53 31 chr3 22426478 22426557 -205098021 + MER47A DNA MER2_type 290 366 0 4173 132 54 36 chr3 22426557 22426818 -205097760 - L1MB3 LINE L1 -543 5640 5385 2504 77 0 3 chr3 22426860 22427170 -205097408 - AluSp SINE Alu -4 309 1 2078 146 3 0 chr3 22427225 22427534 -205097044 - AluSx SINE Alu -2 310 1 2323 202 24 34 chr3 22427534 22427687 -205096891 - L1MB3 LINE L1 -750 5396 5243 2758 140 34 0 chr3 22427687 22428101 -205096477 - MSTA LTR MaLR 0 428 1 2323 202 24 34 chr3 22428101 22428297 -205096281 - L1MB3 LINE L1 -903 5243 5047 1644 172 7 28 chr3 22428297 22428588 -205095990 - AluJo SINE Alu -21 291 7 2323 202 24 34 chr3 22428588 22428830 -205095748 - L1MB3 LINE L1 -1099 5047 4810 301 94 16 62 chr3 22428832 22428896 -205095682 - L1MB2 LINE L1 0 6171 6111 430 279 10 0 chr3 22428897 22429001 -205095577 - Tigger5 DNA MER2_type 0 2323 2219 271 200 40 0 chr3 22428996 22429046 -205095532 - Tigger5 DNA MER2_type -2270 53 2 * 1372 142 61 4 chr3 22429048 22429295 -205095283 - L1MB2 LINE L1 -59 6112 5852 5386 202 36 69 chr3 22429297 22429658 -205094920 - L1MB3 LINE L1 -1340 4806 4435 2204 128 7 0 chr3 22429658 22429964 -205094614 - AluSx SINE Alu -4 308 1 5386 202 36 69 chr3 22429964 22431001 -205093577 - L1MB3 LINE L1 -1711 4435 3463 928 158 0 0 chr3 22431001 22431134 -205093444 - FLAM_C SINE Alu 0 133 1 5386 202 36 69 chr3 22431134 22431303 -205093275 - L1MB3 LINE L1 -2683 3463 3290 234 209 70 35 chr3 22431338 22431424 -205093154 - HAL1 LINE L1 -289 2218 2130 1741 255 45 44 chr3 22431442 22432263 -205092315 - HAL1 LINE L1 -525 1982 1128 437 250 122 0 chr3 22432266 22432414 -205092164 + MIR SINE MIR 53 218 -44 506 244 98 33 chr3 22432466 22432740 -205091838 - HAL1 LINE L1 -1398 1109 818 1910 135 57 3 chr3 22432743 22433039 -205091539 + AluSx SINE Alu 1 312 0 269 145 158 53 chr3 22433056 22433132 -205091446 + AluJ/FRAM SINE Alu 219 302 0 1946 150 85 18 chr3 22433256 22433596 -205090982 - MER47A DNA MER2_type 0 366 4 545 290 71 62 chr3 22433971 22434323 -205090255 - HAL1 LINE L1 -2152 355 1 853 307 77 33 chr3 22434402 22434963 -205089615 - L2 LINE L2 0 3313 2714 1531 179 7 48 chr3 22435232 22435523 -205089055 - AluJo SINE Alu -33 279 1 216 235 99 37 chr3 22436158 22436239 -205088339 - MIR SINE MIR -1 261 176 805 188 0 8 chr3 22436249 22436382 -205088196 + AluJb SINE Alu 5 136 -176 2406 86 0 0 chr3 22436382 22436684 -205087894 + AluY SINE Alu 1 302 -9 1992 179 32 23 chr3 22436688 22437155 -205087423 - MLT2A2 LTR ERVL -66 488 8 1077 178 9 28 chr3 22437156 22437369 -205087209 - AluJo SINE Alu -41 271 63 1520 247 175 61 chr3 22437393 22438028 -205086550 - L1M4 LINE L1 -1495 4651 4090 2266 126 53 0 chr3 22438028 22438370 -205086208 - L1MA3 LINE L1 0 6305 5946 1520 247 175 61 chr3 22438370 22438523 -205086055 - L1M4 LINE L1 -2056 4090 3956 297 0 0 0 chr3 22438523 22438556 -205086022 + (CA)n Simple_repeat Simple_repeat 2 34 0 1520 247 175 61 chr3 22438556 22438937 -205085641 - L1M4 LINE L1 -2190 3956 3620 2457 87 3 0 chr3 22438937 22439248 -205085330 - AluSp SINE Alu -1 312 1 1520 247 175 61 chr3 22439248 22439538 -205085040 - L1M4 LINE L1 -2526 3620 2974 * 3313 193 48 8 chr3 22439531 22440475 -205084103 - L1ME1 LINE L1 -175 5991 5010 332 274 38 65 chr3 22440816 22441002 -205083576 - L1ME LINE L1 -349 5772 5592 726 235 60 20 chr3 22441128 22441379 -205083199 - MER20B DNA MER1_type -1 782 522 1871 176 0 0 chr3 22442136 22442443 -205082135 - AluJo SINE Alu -5 307 1 629 280 80 40 chr3 22442615 22442865 -205081713 + L2 LINE L2 3054 3313 0 232 257 105 86 chr3 22442897 22443107 -205081471 - L1ME LINE L1 -200 5921 5708 268 233 123 14 chr3 22443185 22443258 -205081320 - LTR67 LTR ERVL -104 453 373 205 368 53 0 chr3 22444203 22444279 -205080299 + MIR SINE MIR 33 112 -96 1546 164 24 45 chr3 22444573 22444710 -205079868 + AluJb SINE Alu 1 139 -173 2191 105 30 3 chr3 22444710 22445014 -205079564 + AluSq SINE Alu 1 312 -1 1546 164 24 45 chr3 22445014 22445163 -205079415 + AluJb SINE Alu 139 281 -31 1629 170 6 25 chr3 22446814 22447132 -205077446 - AluJo SINE Alu 0 312 1 212 234 0 0 chr3 22447556 22447603 -205076975 - L2 LINE L2 -5 3308 3262 245 276 0 58 chr3 22447641 22447728 -205076850 - L2 LINE L2 -160 3112 3031 2280 96 0 0 chr3 22448232 22448533 -205076045 + AluSq SINE Alu 1 301 -12 334 285 75 65 chr3 22449258 22449472 -205075106 - L1ME3A LINE L1 -5 6165 5950 2129 123 0 0 chr3 22449499 22449800 -205074778 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 22449804 22449827 -205074751 + AT_rich Low_complexity Low_complexity 1 23 0 7743 93 64 12 chr3 22449944 22451071 -205073507 - HSMAR1 DNA Mariner -92 1195 11 21 0 0 0 chr3 22452216 22452237 -205072341 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 22452314 22452338 -205072240 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 22452386 22452411 -205072167 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 22452460 22452584 -205071994 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 22452594 22452642 -205071936 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 22452705 22452751 -205071827 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 22452807 22452828 -205071750 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 22452838 22452880 -205071698 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 22453326 22453411 -205071167 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 506 282 250 16 chr3 22453893 22454209 -205070369 - L2 LINE L2 -52 3261 2872 270 191 101 45 chr3 22454432 22454521 -205070057 - L2 LINE L2 -5 3267 3174 299 51 0 26 chr3 22454537 22454600 -205069978 - Alu SINE Alu 0 309 248 519 260 127 7 chr3 22454718 22454868 -205069710 + MIR SINE MIR 74 241 -21 447 270 236 27 chr3 22455318 22455577 -205069001 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 22456173 22456257 -205068321 + AT_rich Low_complexity Low_complexity 1 84 0 2215 76 16 0 chr3 22456522 22456825 -205067753 - AluY SINE Alu -2 309 2 186 277 0 21 chr3 22456939 22456986 -205067592 + MIR3 SINE MIR 109 154 -54 231 254 149 0 chr3 22457266 22457333 -205067245 - L3 LINE CR1 -4 1573 1497 2310 76 0 3 chr3 22458394 22458695 -205065883 + AluSg SINE Alu 1 300 -10 34 42 0 0 chr3 22459024 22459072 -205065506 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 22459109 22459168 -205065410 + AT_rich Low_complexity Low_complexity 1 59 0 1216 232 115 40 chr3 22459188 22459614 -205064964 + L1ME3A LINE L1 5671 6128 -42 1914 128 3 7 chr3 22459615 22459912 -205064666 - AluSx SINE Alu -16 296 1 857 94 39 0 chr3 22459917 22460044 -205064534 - AluSq/x SINE Alu -181 132 1 368 252 65 24 chr3 22460060 22460183 -205064395 + MIR SINE MIR 75 202 -60 1768 142 11 3 chr3 22460364 22460646 -205063932 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 22461992 22462017 -205062561 + (A)n Simple_repeat Simple_repeat 1 25 0 368 207 54 54 chr3 22462260 22462439 -205062139 - MIR3 SINE MIR -18 190 12 2024 123 7 3 chr3 22463627 22463920 -205060658 + AluSx SINE Alu 1 294 -18 1280 143 0 78 chr3 22464016 22464260 -205060318 + AluJo SINE Alu 33 257 -55 232 196 0 59 chr3 22464432 22464483 -205060095 + L3 LINE CR1 1290 1337 -240 1961 145 3 0 chr3 22464807 22465111 -205059467 - AluSx SINE Alu -7 305 1 803 144 0 0 chr3 22465495 22465613 -205058965 - AluSq/x SINE Alu -194 119 2 294 151 0 58 chr3 22465690 22465776 -205058802 + CT-rich Low_complexity Low_complexity 4 84 0 548 217 7 43 chr3 22465779 22465805 -205058773 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 22465805 22465874 -205058704 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 548 217 7 43 chr3 22465874 22465985 -205058593 - FLAM_C SINE Alu -194 108 1 394 273 47 8 chr3 22465990 22466118 -205058460 - MIR SINE MIR -74 188 56 884 114 0 15 chr3 22466416 22466547 -205058031 + FLAM_C SINE Alu 5 133 0 1598 170 69 58 chr3 22467166 22467497 -205057081 + L1MD2 LINE L1 5093 5419 -940 1908 130 27 3 chr3 22467497 22467790 -205056788 + AluSx SINE Alu 1 300 -12 1609 169 0 0 chr3 22467791 22468064 -205056514 + AluJo SINE Alu 33 305 -7 1598 170 69 58 chr3 22468064 22468291 -205056287 + L1MD2 LINE L1 5418 6169 -190 * 1685 143 6 57 chr3 22468278 22468358 -205056220 + L1MB8 LINE L1 5727 5809 -369 2015 115 0 10 chr3 22468358 22468492 -205056086 + AluSq SINE Alu 1 135 -178 2238 84 0 3 chr3 22468492 22468791 -205055787 + AluSg SINE Alu 1 298 -12 2015 115 0 10 chr3 22468791 22468952 -205055626 + AluSq SINE Alu 135 293 -20 1685 143 6 57 chr3 22468952 22469207 -205055371 + L1MB8 LINE L1 5809 6045 -133 919 137 0 14 chr3 22469886 22470032 -205054546 - AluJb SINE Alu -31 281 138 2205 112 26 0 chr3 22470035 22470339 -205054239 - AluSq SINE Alu -1 312 1 570 221 0 38 chr3 22470473 22470604 -205053974 + AluSg/x SINE Alu 85 210 -100 203 290 0 16 chr3 22470800 22470862 -205053716 + CT-rich Low_complexity Low_complexity 3 63 0 849 221 50 15 chr3 22471090 22471289 -205053289 - MIR SINE MIR -49 213 8 1033 170 13 52 chr3 22471428 22471657 -205052921 - AluJo SINE Alu -15 297 78 2093 113 3 3 chr3 22473186 22473486 -205051092 + AluSx SINE Alu 2 301 -11 2423 135 107 9 chr3 22474374 22474812 -205049766 + L1MB3 LINE L1 5703 6183 0 354 263 51 34 chr3 22476202 22476320 -205048258 + L2 LINE L2 3133 3252 -20 2121 103 7 7 chr3 22476761 22477062 -205047516 + AluY SINE Alu 1 301 -10 2720 181 60 22 chr3 22477062 22477324 -205047254 + L1MB7 LINE L1 4494 4744 -1402 3578 140 29 27 chr3 22477324 22477989 -205046589 + L1MA7 LINE L1 5621 6286 -5 2720 181 60 22 chr3 22477989 22478371 -205046207 + L1MB7 LINE L1 4744 5163 -983 819 214 0 42 chr3 22478371 22478539 -205046039 - AluJb SINE Alu -21 291 131 2265 87 3 0 chr3 22478542 22478842 -205045736 - AluSp SINE Alu -12 301 1 1429 164 38 24 chr3 22478852 22479144 -205045434 - AluJb SINE Alu -13 299 4 4700 157 80 6 chr3 22479149 22480092 -205044486 + L1MB7 LINE L1 5153 6165 -19 1864 150 49 15 chr3 22480493 22480820 -205043758 - MER7A DNA MER2_type 0 346 11 2172 76 28 0 chr3 22481015 22481306 -205043272 + AluY SINE Alu 1 299 -12 3220 165 66 10 chr3 22481567 22482183 -205042395 + L1MB8 LINE L1 5010 5692 -486 216 0 0 0 chr3 22482183 22482207 -205042371 + (CA)n Simple_repeat Simple_repeat 2 25 0 3220 165 66 10 chr3 22482207 22482457 -205042121 + L1MB8 LINE L1 5692 5926 -252 997 91 0 0 chr3 22482580 22482712 -205041866 - AluSp SINE Alu -181 132 1 3891 206 96 50 chr3 22482718 22483248 -205041330 - L1MCb LINE L1 -4820 1744 1240 1700 144 28 14 chr3 22483248 22483407 -205041171 - AluSx SINE Alu -12 300 134 2234 103 0 0 chr3 22483407 22483707 -205040871 - AluSg SINE Alu -10 300 1 1700 144 28 14 chr3 22483707 22483838 -205040740 - AluSx SINE Alu -178 134 6 3891 206 96 50 chr3 22483838 22484432 -205040146 - L1MCb LINE L1 -5324 1240 675 1884 146 10 16 chr3 22484432 22484740 -205039838 - AluJb SINE Alu 0 312 7 3891 206 96 50 chr3 22484740 22485252 -205039326 - L1MCb LINE L1 -5889 675 2 240 299 299 11 chr3 22485423 22485597 -205038981 + MIR SINE MIR 23 246 -16 289 284 97 45 chr3 22485814 22485948 -205038630 + MIR SINE MIR 37 177 -85 222 226 38 0 chr3 22486011 22486064 -205038514 + MIR SINE MIR 97 151 -111 2271 83 0 3 chr3 22487089 22487390 -205037188 - AluSq SINE Alu -13 300 1 1945 142 3 0 chr3 22488380 22488676 -205035902 + AluSx SINE Alu 1 297 -15 2247 76 0 3 chr3 22488991 22489282 -205035296 - AluY SINE Alu -21 290 1 977 245 42 28 chr3 22492210 22492496 -205032082 + L2 LINE L2 3019 3308 -5 866 144 0 43 chr3 22492588 22492727 -205031851 + FLAM_C SINE Alu 1 133 0 309 256 228 6 chr3 22492915 22493095 -205031483 + L1ME LINE L1 5636 5855 -266 808 224 26 0 chr3 22493665 22493821 -205030757 + MER45A DNA AcHobo 1 160 -18 266 279 101 23 chr3 22493993 22494122 -205030456 + MIR SINE MIR 109 247 -15 1600 102 4 4 chr3 22494820 22495046 -205029532 + AluSg/x SINE Alu 73 298 -14 498 33 0 0 chr3 22495046 22495106 -205029472 + (TA)n Simple_repeat Simple_repeat 2 61 0 1034 190 8 101 chr3 22495369 22495543 -205029035 - MER58A DNA MER1_type -2196 224 35 3212 161 43 37 chr3 22495543 22496220 -205028358 + L1MB7 LINE L1 5485 6165 -19 1034 190 8 101 chr3 22496220 22496241 -205028337 - MER58A DNA MER1_type -2385 35 53 2350 77 0 7 chr3 22496241 22496541 -205028037 + AluSc SINE Alu 1 298 -11 1034 190 8 101 chr3 22496541 22496591 -205027987 - MER58A DNA MER1_type -2366 54 1 1933 121 0 4 chr3 22497296 22497560 -205027018 - AluSx SINE Alu -16 296 34 188 320 78 19 chr3 22499372 22499475 -205025103 + L2 LINE L2 3155 3263 -9 201 322 35 9 chr3 22499843 22499958 -205024620 + L2 LINE L2 2917 3034 -238 266 348 6 85 chr3 22500216 22500297 -205024281 + L2 LINE L2 3121 3184 -88 691 211 99 89 chr3 22500297 22500389 -205024189 + MER58C DNA MER1_type 1 91 -2329 2207 121 3 3 chr3 22500389 22500696 -205023882 - AluSx SINE Alu -5 307 1 691 211 99 89 chr3 22500696 22500816 -205023762 + MER58C DNA MER1_type 91 215 0 266 348 6 85 chr3 22500816 22500898 -205023680 + L2 LINE L2 3184 3271 -1 1111 170 13 52 chr3 22502326 22502555 -205022023 + AluJo SINE Alu 78 297 -15 766 221 50 15 chr3 22502694 22502893 -205021685 + MIR SINE MIR 8 213 -49 1404 128 46 39 chr3 22503313 22503513 -205021065 - L1MA8 LINE L1 -2 6289 6085 1893 148 24 0 chr3 22503513 22503810 -205020768 + AluSx SINE Alu 1 304 -8 1404 128 46 39 chr3 22503810 22503891 -205020687 - L1MA8 LINE L1 -206 6085 6006 243 189 40 14 chr3 22504082 22504156 -205020422 + (CAA)n Simple_repeat Simple_repeat 3 78 0 1981 194 109 2 chr3 22505234 22505647 -205018931 + MSTB2 LTR MaLR 1 457 0 196 327 58 0 chr3 22508370 22508474 -205016104 - MER5A DNA MER1_type -79 110 1 408 208 167 17 chr3 22508501 22508621 -205015957 - MER5B DNA MER1_type -40 138 1 589 153 0 0 chr3 22508651 22508757 -205015821 + MER5A DNA MER1_type 4 109 -80 233 240 231 10 chr3 22508682 22508786 -205015792 - MER5A DNA MER1_type -23 166 40 * 280 328 0 17 chr3 22508831 22508947 -205015631 + MER5B DNA MER1_type 63 176 -2 282 324 28 49 chr3 22508953 22509095 -205015483 + MIR SINE MIR 13 151 -111 5050 118 7 17 chr3 22509228 22510435 -205014143 + L1P4 LINE L1 4589 5792 -371 817 152 7 46 chr3 22510435 22510586 -205013992 - THE1C LTR MaLR 0 375 231 199 248 0 0 chr3 22511212 22511266 -205013312 - MIR SINE MIR -65 143 97 681 153 140 20 chr3 22511866 22512016 -205012562 - MLT1D LTR MaLR 0 505 338 679 137 26 0 chr3 22512116 22512233 -205012345 + L1 LINE L1 4689 4808 -1338 220 210 25 0 chr3 22512240 22512321 -205012257 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 858 198 54 0 chr3 22513469 22513636 -205010942 - MER97b DNA MER1_type? -875 178 3 333 0 0 0 chr3 22513766 22513803 -205010775 + (CA)n Simple_repeat Simple_repeat 2 38 0 372 158 0 0 chr3 22513803 22513879 -205010699 + GA-rich Low_complexity Low_complexity 1 76 0 197 234 187 28 chr3 22515239 22515346 -205009232 + L2 LINE L2 3189 3312 -1 417 221 100 57 chr3 22515870 22516010 -205008568 + MLT1H LTR MaLR 404 549 0 188 375 107 0 chr3 22516017 22516129 -205008449 + L2 LINE L2 2915 3038 -234 310 197 56 0 chr3 22516695 22516766 -205007812 + MER94 DNA DNA 48 122 -12 237 297 0 55 chr3 22517296 22517387 -205007191 + MIR3 SINE MIR 122 207 -1 1382 186 52 42 chr3 22517841 22518147 -205006431 + AluJo SINE Alu 1 309 -3 320 289 69 64 chr3 22518204 22518422 -205006156 + MIR SINE MIR 10 228 -34 302 237 10 0 chr3 22518998 22519095 -205005483 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 22519097 22519185 -205005393 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 411 223 273 0 chr3 22519188 22519327 -205005251 + MER5A DNA MER1_type 9 185 -4 6955 57 10 43 chr3 22520374 22521360 -205003218 - SVA Other Other 0 1386 433 6117 60 19 47 chr3 22521373 22522533 -205002045 - SVA Other Other -518 868 4 223 0 0 96 chr3 22522533 22522585 -205001993 + (GGGAGA)n Simple_repeat Simple_repeat 4 50 0 820 157 0 0 chr3 22523119 22523234 -205001344 + FLAM_C SINE Alu 1 115 -28 956 292 128 8 chr3 22523989 22524356 -205000222 + LTR16C LTR ERVL 81 491 0 26 0 0 0 chr3 22524514 22524540 -205000038 + AT_rich Low_complexity Low_complexity 1 26 0 2692 80 0 3 chr3 22524579 22524928 -204999650 + L1PA8A LINE L1 5480 5827 -304 2609 76 0 12 chr3 22525028 22525372 -204999206 + L1PA8A LINE L1 5780 6119 -12 300 245 108 10 chr3 22525471 22525573 -204999005 + MIR SINE MIR 95 206 -56 329 152 174 43 chr3 22525833 22525925 -204998653 - MER53 DNA DNA -82 107 4 260 288 0 0 chr3 22526341 22526407 -204998171 + MIR SINE MIR 196 261 -1 253 320 0 13 chr3 22526994 22527072 -204997506 - MIR SINE MIR -178 84 8 1607 188 4 11 chr3 22527907 22528184 -204996394 + AluJo SINE Alu 1 275 -37 33 90 0 0 chr3 22529159 22529248 -204995330 + AT_rich Low_complexity Low_complexity 1 89 0 572 270 104 12 chr3 22531042 22531205 -204993373 + MER20B DNA MER1_type 1 178 -605 330 276 64 72 chr3 22531366 22531752 -204992826 + MLT1H LTR MaLR 57 533 -16 441 317 43 11 chr3 22532866 22533052 -204991526 - MIR SINE MIR -51 211 20 209 317 28 42 chr3 22534318 22534460 -204990118 + MIR SINE MIR 58 197 -65 468 285 15 69 chr3 22534581 22534841 -204989737 + LTR16A1 LTR ERVL 208 453 -4 207 219 140 84 chr3 22534872 22535056 -204989522 + MIR SINE MIR 42 235 -27 443 309 79 0 chr3 22535440 22535605 -204988973 - MIR SINE MIR 0 262 85 23 0 0 0 chr3 22535941 22535964 -204988614 + AT_rich Low_complexity Low_complexity 1 23 0 964 259 110 47 chr3 22536958 22537387 -204987191 + LTR16A1 LTR ERVL 2 457 0 258 184 92 103 chr3 22537741 22537828 -204986750 + L2 LINE L2 3141 3226 -46 685 224 28 0 chr3 22537971 22538114 -204986464 + MER3 DNA MER1_type 62 208 -1 268 260 0 0 chr3 22538075 22538125 -204986453 - MER3 DNA MER1_type -122 87 38 * 334 353 98 0 chr3 22538128 22538250 -204986328 - MIR3 SINE MIR -52 156 23 845 251 49 12 chr3 22540198 22540445 -204984133 + MIR SINE MIR 2 257 -5 230 103 103 0 chr3 22540503 22540542 -204984036 - L1P4 LINE L1 -426 5735 5693 21 36 0 0 chr3 22540790 22540818 -204983760 + AT_rich Low_complexity Low_complexity 1 28 0 240 258 30 0 chr3 22541120 22541186 -204983392 - L1MC4a LINE L1 -587 7221 7154 2178 216 52 5 chr3 22541945 22542524 -204982054 + L1MC4 LINE L1 7161 7766 -276 1341 108 36 21 chr3 22542524 22542718 -204981860 + AluJb SINE Alu 98 294 -18 607 230 29 11 chr3 22542722 22542896 -204981682 + L1MC4 LINE L1 7757 7933 -109 296 341 71 45 chr3 22542916 22543224 -204981354 - L2 LINE L2 -20 3252 2937 629 226 158 12 chr3 22543585 22543749 -204980829 - MER5A DNA MER1_type 0 189 2 1579 182 4 11 chr3 22543754 22544029 -204980549 + AluJo SINE Alu 1 273 -39 443 128 0 13 chr3 22544058 22544136 -204980442 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 22 0 0 0 chr3 22544603 22544625 -204979953 + AT_rich Low_complexity Low_complexity 1 22 0 604 224 6 6 chr3 22544974 22545153 -204979425 + L1 LINE L1 3246 3424 -2722 27544 29 14 2 chr3 22545154 22551191 -204973387 + L1PA3 LINE L1 1 6155 0 15928 93 10 8 chr3 22551323 22554267 -204970311 + L1PA7 LINE L1 3221 6154 0 380 164 0 0 chr3 22554304 22554365 -204970213 + L1PA16 LINE L1 6098 6158 -8 928 261 9 4 chr3 22554941 22555171 -204969407 - MLT1G1 LTR MaLR -364 231 1 414 270 98 58 chr3 22555171 22555345 -204969233 - MLT1G1-int LTR MaLR 0 1371 1191 250 211 53 0 chr3 22555594 22555651 -204968927 + MER46C DNA MER2_type 279 338 0 631 257 34 22 chr3 22555912 22556091 -204968487 - MIR SINE MIR -14 248 68 1846 193 38 34 chr3 22556095 22556173 -204968405 - Looper DNA T2_type -941 617 541 20802 94 21 1 chr3 22556173 22558825 -204965753 - Charlie3 DNA MER1_type -4 2706 1 1846 193 38 34 chr3 22558825 22558841 -204965737 - Looper DNA T2_type -1017 541 527 912 200 11 21 chr3 22558841 22559031 -204965547 + L1MD2 LINE L1 6172 6359 0 1846 193 38 34 chr3 22559031 22559413 -204965165 - Looper DNA T2_type -1031 527 138 205 188 24 0 chr3 22559413 22559498 -204965080 + (TA)n Simple_repeat Simple_repeat 1 87 0 735 164 26 13 chr3 22559498 22559650 -204964928 - Looper DNA T2_type -1402 156 3 348 235 155 46 chr3 22559661 22559869 -204964709 + L2 LINE L2 2772 2997 -275 192 310 99 14 chr3 22559964 22560035 -204964543 + L2 LINE L2 3134 3210 -62 2121 99 14 7 chr3 22560190 22560484 -204964094 + AluSq SINE Alu 1 296 -17 348 217 165 26 chr3 22560510 22560625 -204963953 + Charlie8 DNA MER1_type 91 221 -2196 2112 98 0 4 chr3 22560760 22561036 -204963542 - AluSq SINE Alu -15 298 24 1729 99 0 5 chr3 22561036 22561257 -204963321 - AluSq SINE Alu -92 221 1 672 232 68 11 chr3 22561721 22561898 -204962680 + MER5A DNA MER1_type 1 187 -2 245 348 33 52 chr3 22561997 22562207 -204962371 + L2 LINE L2 2958 3163 -109 30 45 0 0 chr3 22562353 22562397 -204962181 + AT_rich Low_complexity Low_complexity 1 44 0 1215 194 26 8 chr3 22562844 22563112 -204961466 + L1M4 LINE L1 4290 4562 -1584 205 305 85 24 chr3 22563155 22563237 -204961341 + L2 LINE L2 3185 3271 -1 295 282 29 58 chr3 22563513 22563616 -204960962 - L2 LINE L2 -1 3271 3172 704 220 196 4 chr3 22563803 22564048 -204960530 - L1ME2 LINE L1 -6 6158 5867 24 67 0 0 chr3 22564590 22564635 -204959943 + GC_rich Low_complexity Low_complexity 1 45 0 6595 146 83 8 chr3 22565519 22566663 -204957915 - Tigger3b DNA MER2_type 0 1231 2 446 290 9 63 chr3 22566739 22566778 -204957800 - L1ME2 LINE L1 -306 5815 5775 1640 157 7 49 chr3 22566778 22567084 -204957494 - AluJo SINE Alu -19 293 1 446 290 9 63 chr3 22567084 22567265 -204957313 - L1ME2 LINE L1 -346 5775 5607 2360 94 3 0 chr3 22567499 22567798 -204956780 - AluSp SINE Alu -13 300 1 680 154 48 148 chr3 22567804 22568098 -204956480 - L1MA4 LINE L1 0 6300 6041 1541 167 12 4 chr3 22568491 22568749 -204955829 - AluJo SINE Alu -14 298 39 1014 73 6 8 chr3 22569085 22569262 -204955316 - AluJb SINE Alu -13 299 86 540 79 0 40 chr3 22569954 22570030 -204954548 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2045 144 17 0 chr3 22570101 22570400 -204954178 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 22570454 22570483 -204954095 + AT_rich Low_complexity Low_complexity 1 29 0 304 297 162 9 chr3 22570887 22570998 -204953580 - MIR3 SINE MIR -32 176 49 2421 77 0 3 chr3 22572368 22572668 -204951910 - AluY SINE Alu -12 299 1 1762 171 24 0 chr3 22572930 22573223 -204951355 + AluJb SINE Alu 1 300 -12 183 266 101 101 chr3 22573232 22573318 -204951260 + MIR SINE MIR 14 102 -160 1048 157 103 29 chr3 22573318 22573522 -204951056 + MER20 DNA MER1_type 1 219 0 183 266 101 101 chr3 22573522 22573593 -204950985 + MIR SINE MIR 101 171 -91 759 180 0 58 chr3 22573633 22573772 -204950806 + FLAM_A SINE Alu 2 132 -1 4860 162 32 18 chr3 22573807 22574299 -204950279 - L1MB7 LINE L1 0 6184 5671 2121 125 0 7 chr3 22574299 22574588 -204949990 + AluSx SINE Alu 8 294 -18 4860 162 32 18 chr3 22574588 22575035 -204949543 - L1MB7 LINE L1 -513 5671 5232 1919 143 0 33 chr3 22575444 22575751 -204948827 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 22576171 22576193 -204948385 + AT_rich Low_complexity Low_complexity 1 22 0 885 221 77 71 chr3 22577397 22577736 -204946842 + L2 LINE L2 2973 3313 0 220 384 12 43 chr3 22577906 22578070 -204946508 + L2 LINE L2 563 721 -2593 244 241 0 17 chr3 22578103 22578161 -204946417 - Charlie4 DNA MER1_type -23 1938 1882 416 332 72 69 chr3 22578268 22578407 -204946171 + L2 LINE L2 2765 2902 -370 2335 96 6 10 chr3 22578407 22578719 -204945859 + AluSq SINE Alu 1 311 -2 416 332 72 69 chr3 22578719 22579070 -204945508 + L2 LINE L2 2902 3256 -16 2026 118 0 44 chr3 22579648 22579981 -204944597 - AluSx SINE Alu 0 320 1 2080 130 0 7 chr3 22580186 22580487 -204944091 + AluJb SINE Alu 11 309 -3 341 301 59 50 chr3 22580814 22581033 -204943545 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 22581258 22581476 -204943102 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 22581642 22581961 -204942617 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 22582665 22582939 -204941639 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 22582947 22583254 -204941324 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 22583634 22583820 -204940758 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 22584263 22584289 -204940289 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 22584290 22584573 -204940005 - AluJb SINE Alu -39 273 1 381 246 188 22 chr3 22584963 22585101 -204939477 + MIR SINE MIR 81 241 -21 1435 179 47 11 chr3 22586127 22586406 -204938172 - AluJo SINE Alu -19 293 5 2260 92 0 0 chr3 22586482 22586801 -204937777 + AluSq SINE Alu 1 319 0 384 236 24 49 chr3 22587449 22587572 -204937006 + L2 LINE L2 3193 3312 -1 243 61 0 0 chr3 22587699 22587732 -204936846 + (A)n Simple_repeat Simple_repeat 1 33 0 215 153 119 51 chr3 22589139 22589198 -204935380 + MIR SINE MIR 135 197 -65 441 273 55 8 chr3 22589385 22589513 -204935065 + MIR SINE MIR 20 153 -55 2230 123 0 3 chr3 22589870 22590180 -204934398 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 22590350 22590371 -204934207 + AT_rich Low_complexity Low_complexity 1 21 0 554 138 92 31 chr3 22590431 22590497 -204934081 - L1MB8 LINE L1 -6 6172 6111 2407 58 41 0 chr3 22590497 22590791 -204933787 - AluY SINE Alu -5 306 1 554 138 92 31 chr3 22590791 22590854 -204933724 - L1MB8 LINE L1 -67 6111 6035 225 346 13 10 chr3 22590971 22591128 -204933450 + MIR SINE MIR 26 243 -19 368 261 36 51 chr3 22591142 22591280 -204933298 + L2 LINE L2 3178 3313 0 319 186 5 59 chr3 22591740 22591835 -204932743 + L1ME2 LINE L1 6015 6108 -54 1830 138 50 10 chr3 22591835 22592132 -204932446 + AluJb SINE Alu 1 309 -3 341 301 59 50 chr3 22592458 22592677 -204931901 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 22592902 22593120 -204931458 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 22593286 22593605 -204930973 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 22594309 22594583 -204929995 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 22594591 22594898 -204929680 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 22595278 22595464 -204929114 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 22595907 22595933 -204928645 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 22595934 22596217 -204928361 - AluJb SINE Alu -39 273 1 381 246 188 22 chr3 22596607 22596745 -204927833 + MIR SINE MIR 81 241 -21 1435 179 47 11 chr3 22597771 22598050 -204926528 - AluJo SINE Alu -19 293 5 2260 92 0 0 chr3 22598126 22598409 -204926169 + AluSq SINE Alu 1 319 0 271 56 0 0 chr3 22598409 22598445 -204926133 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 384 279 8 33 chr3 22599094 22599216 -204925362 + L2 LINE L2 3153 3271 -1 1541 167 12 4 chr3 22599618 22599876 -204924702 - AluJo SINE Alu -14 298 39 1014 73 6 8 chr3 22600212 22600389 -204924189 - AluJb SINE Alu -13 299 86 540 79 0 40 chr3 22601081 22601157 -204923421 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2045 144 17 0 chr3 22601228 22601527 -204923051 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 22601581 22601610 -204922968 + AT_rich Low_complexity Low_complexity 1 29 0 304 297 162 9 chr3 22602014 22602125 -204922453 - MIR3 SINE MIR -32 176 49 2421 77 0 3 chr3 22603495 22603795 -204920783 - AluY SINE Alu -12 299 1 1762 171 24 0 chr3 22604057 22604350 -204920228 + AluJb SINE Alu 1 300 -12 183 266 101 101 chr3 22604359 22604445 -204920133 + MIR SINE MIR 14 102 -160 1048 157 103 29 chr3 22604445 22604649 -204919929 + MER20 DNA MER1_type 1 219 0 183 266 101 101 chr3 22604649 22604720 -204919858 + MIR SINE MIR 101 171 -91 759 180 0 58 chr3 22604760 22604899 -204919679 + FLAM_A SINE Alu 2 132 -1 4860 162 32 18 chr3 22604934 22605426 -204919152 - L1MB7 LINE L1 0 6184 5671 2121 125 0 7 chr3 22605426 22605715 -204918863 + AluSx SINE Alu 8 294 -18 4860 162 32 18 chr3 22605715 22606162 -204918416 - L1MB7 LINE L1 -513 5671 5232 1919 143 0 33 chr3 22606571 22606878 -204917700 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 22607298 22607320 -204917258 + AT_rich Low_complexity Low_complexity 1 22 0 885 221 77 71 chr3 22608524 22608863 -204915715 + L2 LINE L2 2973 3313 0 220 384 12 43 chr3 22609033 22609197 -204915381 + L2 LINE L2 563 721 -2593 244 241 0 17 chr3 22609230 22609288 -204915290 - Charlie4 DNA MER1_type -23 1938 1882 416 332 72 69 chr3 22609395 22609534 -204915044 + L2 LINE L2 2765 2902 -370 2335 96 6 10 chr3 22609534 22609846 -204914732 + AluSq SINE Alu 1 311 -2 416 332 72 69 chr3 22609846 22610197 -204914381 + L2 LINE L2 2902 3256 -16 2026 118 0 44 chr3 22610775 22611108 -204913470 - AluSx SINE Alu 0 320 1 1652 146 60 0 chr3 22611313 22611580 -204912998 + AluSx SINE Alu 11 293 -19 311 200 0 13 chr3 22611580 22611655 -204912923 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 468 205 115 0 chr3 22611657 22611779 -204912799 + MER58C DNA MER1_type 78 213 -2 376 130 0 0 chr3 22611844 22611898 -204912680 + MER66B LTR ERV1 295 348 -138 311 282 36 55 chr3 22613353 22613463 -204911115 + L2 LINE L2 3206 3313 0 536 249 157 19 chr3 22613557 22613818 -204910760 + L1ME4a LINE L1 5531 5827 -294 1923 179 0 3 chr3 22613881 22614188 -204910390 - AluJb SINE Alu -6 306 1 450 214 83 36 chr3 22614203 22614371 -204910207 + L1ME4a LINE L1 5946 6121 0 671 208 193 24 chr3 22614566 22614778 -204909800 + MIR SINE MIR 5 252 -10 336 257 59 33 chr3 22614823 22614975 -204909603 + L1ME4a LINE L1 5573 5728 -393 351 216 29 20 chr3 22615094 22615196 -204909382 + L1ME4a LINE L1 5786 5888 -233 572 249 11 58 chr3 22615220 22615409 -204909169 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 22615639 22615688 -204908890 + AT_rich Low_complexity Low_complexity 1 48 -23 2277 100 7 0 chr3 22615688 22615989 -204908589 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 22615989 22616013 -204908565 + AT_rich Low_complexity Low_complexity 48 71 0 581 177 0 146 chr3 22616585 22616743 -204907835 + FLAM_C SINE Alu 2 136 -7 603 273 132 9 chr3 22616821 22617041 -204907537 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 22617188 22617229 -204907349 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 22617417 22617448 -204907130 + AT_rich Low_complexity Low_complexity 1 31 0 3207 83 38 11 chr3 22618037 22618485 -204906093 + L1PA14 LINE L1 5700 6159 -2 757 186 111 42 chr3 22618937 22619175 -204905403 + MER33 DNA MER1_type 1 242 -82 1262 63 0 13 chr3 22619177 22619336 -204905242 - AluSp/q SINE Alu -1 312 156 481 173 25 0 chr3 22620672 22620753 -204903825 + MER5A DNA MER1_type 30 112 -77 933 194 31 47 chr3 22620805 22620996 -204903582 - MER5A DNA MER1_type 0 189 2 2338 85 0 0 chr3 22621152 22621445 -204903133 - AluSg SINE Alu -17 293 1 1358 173 35 0 chr3 22621645 22621871 -204902707 - MER46A DNA MER2_type -1 235 2 231 290 93 19 chr3 22622709 22622816 -204901762 + MIR SINE MIR 37 151 -111 2156 91 3 7 chr3 22623651 22623961 -204900617 + AluSp SINE Alu 1 309 0 1170 129 4 133 chr3 22623964 22624041 -204900537 - AluJo SINE Alu -102 210 125 2038 119 3 10 chr3 22624041 22624343 -204900235 - AluSx SINE Alu -12 300 1 1170 129 4 133 chr3 22624343 22624506 -204900072 - AluJo SINE Alu -187 125 1 350 152 36 31 chr3 22624562 22624645 -204899933 + LTR24B LTR ERV1 332 544 -32 569 242 68 0 chr3 22624691 22624823 -204899755 + FLAM_A SINE Alu 1 141 -1 419 198 0 33 chr3 22624851 22624942 -204899636 - L1M3 LINE L1 -395 5776 5689 1166 224 111 43 chr3 22624942 22625340 -204899238 + L2 LINE L2 2884 3308 -5 292 244 91 102 chr3 22625645 22625842 -204898736 + MER91A DNA MER1_type 2 196 0 968 213 48 13 chr3 22626161 22626391 -204898187 - MIR SINE MIR -5 257 20 279 213 27 13 chr3 22626397 22626472 -204898106 + CT-rich Low_complexity Low_complexity 4 79 0 234 164 0 0 chr3 22626847 22626902 -204897676 + GA-rich Low_complexity Low_complexity 2 56 0 304 298 129 29 chr3 22627038 22627209 -204897369 + L2 LINE L2 2896 3083 -189 873 168 84 51 chr3 22627385 22627599 -204896979 + MIR SINE MIR 42 262 0 920 71 8 24 chr3 22627710 22627836 -204896742 + AluY SINE Alu 1 124 -187 1296 137 24 9 chr3 22628018 22628230 -204896348 - AluJo SINE Alu -11 301 87 2146 108 28 0 chr3 22628365 22628652 -204895926 + AluSx SINE Alu 1 295 -17 282 29 0 0 chr3 22628731 22628766 -204895812 + (TG)n Simple_repeat Simple_repeat 2 36 0 746 207 0 21 chr3 22628766 22628897 -204895681 - FLAM_C SINE Alu -181 131 2 740 210 0 8 chr3 22628988 22629112 -204895466 + FLAM_A SINE Alu 1 123 -10 2288 87 0 34 chr3 22631394 22631715 -204892863 + AluSg SINE Alu 1 310 0 180 331 0 98 chr3 22632762 22632895 -204891683 + L2 LINE L2 2915 3034 -238 375 184 55 80 chr3 22632996 22633097 -204891481 - L1ME4a LINE L1 -4 6117 6020 1805 184 0 10 chr3 22633097 22633402 -204891176 + AluJb SINE Alu 1 302 -10 375 184 55 80 chr3 22633402 22633463 -204891115 - L1ME4a LINE L1 -101 6020 5959 297 181 178 10 chr3 22633814 22633941 -204890637 - HAL1b LINE L1 -31 1317 1191 239 222 0 67 chr3 22638580 22638670 -204885908 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 865 145 0 0 chr3 22641300 22641424 -204883154 - AluJb SINE Alu -31 281 158 1900 134 17 7 chr3 22642720 22643010 -204881568 - AluJb SINE Alu -19 293 1 1994 203 24 36 chr3 22645213 22645502 -204879076 + L1ME LINE L1 4502 4784 -1362 1550 116 175 4 chr3 22645502 22645753 -204878825 + AluSg1 SINE Alu 1 294 -15 1994 203 24 36 chr3 22645753 22645956 -204878622 + L1ME LINE L1 4784 4988 -1158 868 110 0 0 chr3 22645961 22646079 -204878499 + AluSg/x SINE Alu 173 290 -20 1297 178 108 53 chr3 22646083 22646408 -204878170 + L1ME LINE L1 4987 5359 -807 2470 122 34 53 chr3 22646408 22646844 -204877734 - MSTA LTR MaLR 0 428 1 1297 178 108 53 chr3 22646844 22647067 -204877511 + L1ME LINE L1 5359 5568 -598 494 143 143 43 chr3 22647064 22647204 -204877374 + L1ME2 LINE L1 4133 4286 -1860 * 269 128 64 0 chr3 22647216 22647263 -204877315 + FAM SINE Alu 119 168 -11 949 227 103 46 chr3 22647269 22647459 -204877119 + L1ME2 LINE L1 5130 5308 -856 2592 34 0 7 chr3 22647459 22647754 -204876824 + AluY SINE Alu 1 293 -18 949 227 103 46 chr3 22647754 22647888 -204876690 + L1ME2 LINE L1 5308 5433 -731 1817 197 101 21 chr3 22647888 22648354 -204876224 + MLT1D LTR MaLR 3 505 0 949 227 103 46 chr3 22648354 22648589 -204875989 + L1ME2 LINE L1 5433 5725 -439 1031 237 68 61 chr3 22648907 22649333 -204875245 + L1ME2 LINE L1 5735 6163 -1 335 255 50 96 chr3 22649361 22649417 -204875161 + L2 LINE L2 3085 3142 -171 1674 152 32 0 chr3 22649417 22649700 -204874878 - AluJb SINE Alu -15 297 6 335 255 50 96 chr3 22649700 22649721 -204874857 + L2 LINE L2 3142 3162 -151 2395 64 0 0 chr3 22649721 22650018 -204874560 - AluY SINE Alu -14 297 1 335 255 50 96 chr3 22650018 22650178 -204874400 + L2 LINE L2 3162 3312 -1 221 244 89 44 chr3 22650460 22650550 -204874028 - L2 LINE L2 -175 3097 3004 316 248 68 8 chr3 22651280 22651397 -204873181 + L1ME2 LINE L1 6039 6162 -2 694 241 52 94 chr3 22651486 22651761 -204872817 + HAL1 LINE L1 2042 2327 -180 1883 149 10 19 chr3 22651761 22652070 -204872508 + AluJo SINE Alu 1 306 -6 694 241 52 94 chr3 22652070 22652132 -204872446 + HAL1 LINE L1 2327 2364 -143 2387 61 3 0 chr3 22652132 22652429 -204872149 + AluY SINE Alu 2 299 -12 694 241 52 94 chr3 22652429 22652472 -204872106 + HAL1 LINE L1 2364 2407 -100 5462 79 27 15 chr3 22652714 22653570 -204871008 + SVA Other Other 1 866 -520 6318 59 33 40 chr3 22653629 22654592 -204869986 + SVA Other Other 430 1386 0 251 237 272 43 chr3 22654596 22654753 -204869825 - MIR SINE MIR 0 262 73 331 182 121 0 chr3 22655196 22655295 -204869283 + MER102b DNA MER1_type 72 182 -159 260 266 25 0 chr3 22655307 22655386 -204869192 + MER102b DNA MER1_type 231 311 -30 233 290 0 0 chr3 22655713 22655775 -204868803 + L2 LINE L2 3235 3296 -17 282 149 53 96 chr3 22656005 22656099 -204868479 + MIR SINE MIR 60 149 -113 24 0 0 0 chr3 22656399 22656423 -204868155 + GC_rich Low_complexity Low_complexity 1 24 0 1931 108 24 0 chr3 22657319 22657606 -204866972 + AluSx SINE Alu 1 294 -18 323 206 92 11 chr3 22657624 22657711 -204866867 - L1MCa LINE L1 -4592 1834 1597 1729 114 4 8 chr3 22657719 22657974 -204866604 - AluSp SINE Alu -59 254 1 1214 145 23 9 chr3 22658108 22658329 -204866249 + AluJo SINE Alu 87 310 -2 1866 104 24 17 chr3 22658619 22658773 -204865805 - AluSx SINE Alu -23 289 131 2042 118 0 3 chr3 22658773 22659069 -204865509 - AluSx SINE Alu -17 295 1 1866 104 24 17 chr3 22659069 22659201 -204865377 - AluSx SINE Alu -181 131 1 368 252 65 24 chr3 22659217 22659340 -204865238 + MIR SINE MIR 75 202 -60 1768 142 11 3 chr3 22659521 22659803 -204864775 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 22661149 22661174 -204863404 + (A)n Simple_repeat Simple_repeat 1 25 0 368 207 54 54 chr3 22661417 22661596 -204862982 - MIR3 SINE MIR -18 190 12 2024 123 7 3 chr3 22662784 22663077 -204861501 + AluSx SINE Alu 1 294 -18 1280 143 0 78 chr3 22663173 22663417 -204861161 + AluJo SINE Alu 33 257 -55 232 196 0 59 chr3 22663589 22663640 -204860938 + L3 LINE CR1 1290 1337 -240 1961 145 3 0 chr3 22663964 22664268 -204860310 - AluSx SINE Alu -7 305 1 803 144 0 0 chr3 22664652 22664770 -204859808 - AluSq/x SINE Alu -194 119 2 294 151 0 58 chr3 22664847 22664933 -204859645 + CT-rich Low_complexity Low_complexity 4 84 0 548 217 7 43 chr3 22664936 22664962 -204859616 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 22664962 22665031 -204859547 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 548 217 7 43 chr3 22665031 22665142 -204859436 - FLAM_C SINE Alu -194 108 1 394 273 47 8 chr3 22665147 22665275 -204859303 - MIR SINE MIR -74 188 56 884 114 0 15 chr3 22665573 22665704 -204858874 + FLAM_C SINE Alu 5 133 0 1598 170 69 58 chr3 22666323 22666654 -204857924 + L1MD2 LINE L1 5093 5419 -940 1908 130 27 3 chr3 22666654 22666947 -204857631 + AluSx SINE Alu 1 300 -12 1536 179 0 0 chr3 22666948 22667221 -204857357 + AluJo SINE Alu 33 305 -7 1598 170 69 58 chr3 22667221 22667448 -204857130 + L1MD2 LINE L1 5418 6169 -190 2330 143 11 44 chr3 22667448 22667515 -204857063 + L1MB7 LINE L1 5727 5795 -389 2015 115 0 10 chr3 22667515 22667649 -204856929 + AluSq SINE Alu 1 135 -178 2261 87 0 0 chr3 22667649 22667947 -204856631 + AluSg SINE Alu 1 298 -12 2015 115 0 10 chr3 22667947 22668108 -204856470 + AluSq SINE Alu 135 293 -20 2330 143 11 44 chr3 22668108 22668481 -204856097 + L1MB7 LINE L1 5795 6165 -19 1867 153 0 13 chr3 22668491 22668805 -204855773 + AluJb SINE Alu 1 310 -2 470 245 6 74 chr3 22669032 22669195 -204855383 + L1MD2 LINE L1 6191 6342 -17 208 283 19 0 chr3 22669407 22669460 -204855118 - MIR SINE MIR -2 260 207 771 176 23 0 chr3 22671939 22672070 -204852508 - AluJo SINE Alu -178 134 1 1759 114 83 14 chr3 22672133 22672423 -204852155 + AluSg SINE Alu 1 310 0 202 306 87 44 chr3 22673466 22673649 -204850929 - MIR SINE MIR -70 192 2 4204 150 52 20 chr3 22674759 22675573 -204849005 - L1MA6 LINE L1 0 6300 5461 1068 140 22 11 chr3 22675573 22675751 -204848827 - AluSg/x SINE Alu -13 297 118 2212 102 7 3 chr3 22675774 22676079 -204848499 - AluSq SINE Alu -7 306 1 821 133 0 0 chr3 22676112 22676232 -204848346 - AluSp SINE Alu -193 120 1 1213 116 43 5 chr3 22676232 22676471 -204848107 - L1MA6 LINE L1 -743 5403 5229 2113 114 0 0 chr3 22676517 22676806 -204847772 + AluSg SINE Alu 1 289 -21 196 384 130 7 chr3 22677282 22677420 -204847158 - L2 LINE L2 -1 3271 3117 184 354 128 20 chr3 22677913 22678108 -204846470 + L2 LINE L2 2839 3054 -218 2093 113 3 3 chr3 22678713 22679013 -204845565 + AluSx SINE Alu 2 301 -11 2423 135 107 9 chr3 22679901 22680339 -204844239 + L1MB3 LINE L1 5703 6183 0 354 263 51 34 chr3 22681729 22681847 -204842731 + L2 LINE L2 3133 3252 -20 2072 120 3 0 chr3 22682288 22682587 -204841991 + AluSq SINE Alu 1 300 -13 739 304 104 25 chr3 22682707 22683072 -204841506 - L2 LINE L2 0 3313 2920 311 279 90 33 chr3 22683322 22683444 -204841134 + L3 LINE CR1 1445 1573 -4 1700 152 10 23 chr3 22683457 22683760 -204840818 - AluJb SINE Alu -13 299 1 1616 175 24 0 chr3 22684085 22684377 -204840201 - AluJb SINE Alu -13 299 1 1701 209 108 12 chr3 22684699 22685125 -204839453 + MLT1C LTR MaLR 1 467 0 2228 85 0 3 chr3 22685582 22685875 -204838703 - AluSp SINE Alu -21 292 1 1737 179 3 0 chr3 22686271 22686573 -204838005 - AluJb SINE Alu -9 303 1 513 239 56 46 chr3 22686613 22686810 -204837768 + Charlie8 DNA MER1_type 83 281 -2136 278 306 48 16 chr3 22686822 22686946 -204837632 + MIR SINE MIR 22 149 -113 598 277 84 97 chr3 22687144 22687387 -204837191 - L2 LINE L2 -1 3312 3067 2278 84 0 0 chr3 22687387 22687685 -204836893 + AluY SINE Alu 1 298 -13 598 277 84 97 chr3 22687685 22687744 -204836834 - L2 LINE L2 -246 3067 3009 2069 109 10 0 chr3 22687744 22688037 -204836541 + AluSq SINE Alu 6 301 -12 598 277 84 97 chr3 22688037 22688198 -204836380 - L2 LINE L2 -304 3009 2854 251 255 29 10 chr3 22688292 22688394 -204836184 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1737 157 10 7 chr3 22688597 22688890 -204835688 - AluJb SINE Alu -18 294 1 438 161 17 145 chr3 22688891 22689122 -204835456 + L1MEc LINE L1 2390 2474 -3952 959 174 24 0 chr3 22689127 22689294 -204835284 + FAM SINE Alu 1 43 -6 1345 158 3 101 chr3 22689297 22689625 -204834953 + AluY SINE Alu 1 296 -15 263 228 96 52 chr3 22689626 22689762 -204834816 + L1MEc LINE L1 2555 2696 -3730 905 143 0 0 chr3 22689762 22689895 -204834683 + FLAM_C SINE Alu 1 133 0 183 114 0 0 chr3 22689895 22689930 -204834648 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 277 32 0 0 chr3 22689943 22689974 -204834604 + U2 snRNA snRNA 1 31 -157 394 199 46 46 chr3 22689974 22690105 -204834473 + L1MEc LINE L1 2690 2820 -3606 448 297 130 0 chr3 22690113 22690305 -204834273 - L3 LINE CR1 -802 775 559 797 272 95 9 chr3 22690326 22690558 -204834020 - MIR SINE MIR -4 258 7 1675 122 7 22 chr3 22691565 22691836 -204832742 + AluSx SINE Alu 1 267 -45 2297 93 3 0 chr3 22691857 22692169 -204832409 + AluSq SINE Alu 1 313 0 6093 189 47 38 chr3 22692184 22692897 -204831681 + L1MB7 LINE L1 3584 4290 -1856 1314 191 57 7 chr3 22692897 22693180 -204831398 + AluJo SINE Alu 1 297 -15 2250 92 3 9 chr3 22693180 22693495 -204831083 + AluSq SINE Alu 1 313 0 6093 189 47 38 chr3 22693495 22693701 -204830877 + L1MB7 LINE L1 4290 4493 -1653 2328 77 7 0 chr3 22693701 22694000 -204830578 + AluY SINE Alu 1 301 -10 6093 189 47 38 chr3 22694000 22694262 -204830316 + L1MB7 LINE L1 4493 4751 -1395 3578 140 29 27 chr3 22694262 22694927 -204829651 + L1MA7 LINE L1 5621 6286 -5 6093 189 47 38 chr3 22694927 22695309 -204829269 + L1MB7 LINE L1 4751 5163 -983 819 214 0 42 chr3 22695309 22695477 -204829101 - AluJb SINE Alu -21 291 131 2265 87 3 0 chr3 22695480 22695780 -204828798 - AluSp SINE Alu -12 301 1 1429 164 38 24 chr3 22695790 22696082 -204828496 - AluJb SINE Alu -13 299 4 4700 157 80 6 chr3 22696087 22697030 -204827548 + L1MB7 LINE L1 5153 6165 -19 1864 150 49 15 chr3 22697431 22697758 -204826820 - MER7A DNA MER2_type 0 346 11 2172 76 28 0 chr3 22697953 22698244 -204826334 + AluY SINE Alu 1 299 -12 3890 165 76 17 chr3 22698506 22699122 -204825456 + L1MB7 LINE L1 5010 5714 -470 216 0 0 0 chr3 22699122 22699146 -204825432 + (CA)n Simple_repeat Simple_repeat 2 25 0 3890 165 76 17 chr3 22699146 22699562 -204825016 + L1MB7 LINE L1 5714 6104 -80 2276 100 0 10 chr3 22699999 22700300 -204824278 - AluSp SINE Alu -15 298 1 565 229 0 0 chr3 22700301 22700410 -204824168 + AluJo/FRAM SINE Alu 203 311 -1 807 178 85 96 chr3 22700427 22700616 -204823962 - LTR56 LTR ERV1 -160 285 95 2104 135 3 6 chr3 22700616 22700927 -204823651 - AluJb SINE Alu -2 310 1 306 0 0 0 chr3 22700936 22700970 -204823608 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 2391 89 0 0 chr3 22700970 22701262 -204823316 - AluSx SINE Alu -20 292 1 807 178 85 96 chr3 22701262 22701342 -204823236 - LTR56 LTR ERV1 -356 89 8 2111 189 29 2 chr3 22701342 22701755 -204822823 + L1MB4 LINE L1 5753 6176 -4 1615 144 12 0 chr3 22701767 22702024 -204822554 - MER84 LTR ERVI -2 505 246 989 80 0 0 chr3 22702024 22702149 -204822429 + AluSp/q SINE Alu 177 301 -12 1699 108 8 0 chr3 22702150 22702391 -204822187 - MER84 LTR ERVI -264 243 1 409 219 169 15 chr3 22702396 22702597 -204821981 - L2 LINE L2 -423 2891 2660 508 153 138 102 chr3 22703441 22703533 -204821045 + L2 LINE L2 2371 2458 -856 1997 133 0 13 chr3 22703533 22703834 -204820744 - AluJb SINE Alu -15 297 1 508 153 138 102 chr3 22703834 22703937 -204820641 + L2 LINE L2 2458 2573 -741 3938 162 25 32 chr3 22703937 22704659 -204819919 + LTR62 LTR ERVK 1 717 -2 908 124 0 0 chr3 22705734 22705881 -204818697 + AluSg/x SINE Alu 164 310 0 1733 188 3 7 chr3 22706502 22706800 -204817778 + AluSx SINE Alu 1 297 -15 2360 86 0 0 chr3 22707731 22708021 -204816557 - AluSq SINE Alu -19 294 5 255 214 18 0 chr3 22708648 22708704 -204815874 + L2 LINE L2 3248 3304 -9 339 258 22 0 chr3 22708719 22708808 -204815770 + MIR SINE MIR 82 172 -90 580 222 89 104 chr3 22708849 22709187 -204815391 - MLT1J1 LTR MaLR -110 336 4 3058 141 9 50 chr3 22709205 22709751 -204814827 + LTR26B LTR ERV1 1 524 -7 344 167 0 13 chr3 22709943 22710021 -204814557 + CT-rich Low_complexity Low_complexity 1 77 0 2408 93 3 3 chr3 22710417 22710729 -204813849 - AluSp SINE Alu -1 312 1 1451 214 121 67 chr3 22711024 22711472 -204813106 - MLT1H LTR MaLR -6 543 72 2121 132 82 6 chr3 22711481 22711837 -204812741 - MLT1B LTR MaLR -7 383 1 699 193 132 24 chr3 22712624 22712837 -204811741 + MIR SINE MIR 25 260 -2 1708 146 39 29 chr3 22712850 22713159 -204811419 - AluJo SINE Alu 0 312 1 2610 47 0 0 chr3 22713744 22714045 -204810533 + AluY SINE Alu 1 301 -10 1486 197 3 27 chr3 22714431 22714726 -204809852 - AluJo SINE Alu -24 288 1 31 0 0 0 chr3 22714764 22714795 -204809783 + AT_rich Low_complexity Low_complexity 1 31 0 263 301 80 53 chr3 22715234 22715496 -204809082 + L3 LINE CR1 1308 1576 -1 418 248 10 10 chr3 22716296 22716397 -204808181 - LTR16B LTR ERVL 0 464 364 826 176 28 28 chr3 22716405 22716587 -204807991 + MER53 DNA DNA 2 183 -6 535 268 68 29 chr3 22716585 22716667 -204807911 - LTR16B LTR ERVL -102 362 285 * 2134 181 82 19 chr3 22716667 22717141 -204807437 + MLT1D LTR MaLR 2 505 0 535 268 68 29 chr3 22717141 22717377 -204807201 - LTR16B LTR ERVL -179 285 1 313 215 25 0 chr3 22717388 22717467 -204807111 - MIR SINE MIR -111 151 71 550 215 35 105 chr3 22717467 22717667 -204806911 - MER20 DNA MER1_type -33 186 1 380 304 54 22 chr3 22717696 22717880 -204806698 + MIR SINE MIR 41 230 -32 2234 122 0 0 chr3 22717883 22718187 -204806391 - AluSx SINE Alu -8 304 1 196 368 8 0 chr3 22719366 22719499 -204805079 - L2 LINE L2 -1026 2288 2155 1375 132 54 0 chr3 22719527 22719732 -204804846 - AluSx SINE Alu -96 216 1 25 31 0 0 chr3 22719732 22719764 -204804814 + AT_rich Low_complexity Low_complexity 1 32 0 1484 93 10 5 chr3 22719964 22720158 -204804420 + AluSx SINE Alu 3 197 -115 271 198 49 31 chr3 22720243 22720366 -204804212 + L2 LINE L2 2921 3047 -266 262 248 168 32 chr3 22720596 22720721 -204803857 - MIR SINE MIR -115 147 6 641 163 7 0 chr3 22721756 22721891 -204802687 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 272 300 12 0 chr3 22721891 22721971 -204802607 + (CCCA)n Simple_repeat Simple_repeat 4 84 0 450 278 0 0 chr3 22721971 22722151 -204802427 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 452 277 92 11 chr3 22722249 22722433 -204802145 + MIR SINE MIR 12 210 -52 2217 129 3 0 chr3 22723091 22723402 -204801176 + AluSx SINE Alu 1 312 0 264 206 175 0 chr3 22723744 22723841 -204800737 + MIR SINE MIR 31 144 -118 1910 140 21 11 chr3 22724315 22724601 -204799977 - AluJb SINE Alu -23 289 1 435 239 99 67 chr3 22724603 22724917 -204799661 - L1MC5 LINE L1 -28 7933 7610 2226 106 0 20 chr3 22725054 22725356 -204799222 + AluSc SINE Alu 1 296 -13 1901 124 4 4 chr3 22725944 22726209 -204798369 + AluSx SINE Alu 1 265 -47 355 153 92 20 chr3 22726281 22726379 -204798199 - HAL1b LINE L1 -28 1320 1216 512 200 72 33 chr3 22726431 22726611 -204797967 - HAL1b LINE L1 -222 1126 940 946 276 113 11 chr3 22727113 22727563 -204797015 - HAL1b LINE L1 -415 933 438 2353 85 0 16 chr3 22727566 22727882 -204796696 - AluY SINE Alu 0 311 1 228 312 83 0 chr3 22727943 22728052 -204796526 - HAL1b LINE L1 -734 614 497 225 268 49 0 chr3 22728155 22728237 -204796341 - L2 LINE L2 -220 3052 2967 1296 189 41 144 chr3 22728252 22728711 -204795867 + MLT2B1 LTR ERVL 3 414 0 192 77 0 0 chr3 22729094 22729120 -204795458 + (TGG)n Simple_repeat Simple_repeat 2 27 0 587 89 0 0 chr3 22729288 22729367 -204795211 + MADE1 DNA Mariner 2 80 0 619 337 30 26 chr3 22730722 22731025 -204793553 + MLT1I LTR MaLR 103 406 -3 378 0 0 0 chr3 22731039 22731081 -204793497 + (TG)n Simple_repeat Simple_repeat 1 42 0 781 221 19 33 chr3 22732238 22732451 -204792127 - MER20 DNA MER1_type -9 210 1 282 196 69 143 chr3 22732509 22732609 -204791969 + L1ME3A LINE L1 5996 6077 -93 1797 153 6 31 chr3 22732609 22732929 -204791649 - AluJo SINE Alu 0 312 1 282 196 69 143 chr3 22732929 22733017 -204791561 + L1ME3A LINE L1 6077 6170 0 1966 148 10 3 chr3 22733370 22733660 -204790918 - AluSx SINE Alu -18 294 3 2165 113 10 0 chr3 22733869 22734161 -204790417 + AluSx SINE Alu 1 295 -17 1669 196 3 13 chr3 22734816 22734978 -204789600 - L1M3 LINE L1 -528 5652 5495 2262 117 0 7 chr3 22734978 22735286 -204789292 - AluSx SINE Alu -6 306 1 1669 196 3 13 chr3 22735286 22735450 -204789128 - L1M3 LINE L1 -685 5495 5331 952 264 135 38 chr3 22735450 22735871 -204788707 + L1ME1 LINE L1 5652 6113 -53 1094 197 14 27 chr3 22735943 22736166 -204788412 + AluJo SINE Alu 1 220 -92 386 111 0 0 chr3 22736166 22736220 -204788358 + AluSg/x SINE Alu 84 137 -163 1170 149 11 0 chr3 22737098 22737272 -204787306 + AluSg/x SINE Alu 130 305 -7 885 169 0 20 chr3 22737276 22737424 -204787154 + FRAM SINE Alu 2 146 -30 444 118 0 0 chr3 22737426 22737494 -204787084 + (CATA)n Simple_repeat Simple_repeat 2 69 0 190 268 173 31 chr3 22737666 22737793 -204786785 - MIR SINE MIR -25 237 93 2604 152 18 25 chr3 22737794 22738241 -204786337 - L1MA7 LINE L1 -233 6058 5615 1049 153 88 0 chr3 22738241 22738452 -204786126 + L1MA7 LINE L1 6051 6285 -6 183 233 35 81 chr3 22738470 22738556 -204786022 - MIR SINE MIR -156 106 25 183 80 0 0 chr3 22739324 22739349 -204785229 + (T)n Simple_repeat Simple_repeat 1 25 0 189 238 29 143 chr3 22739413 22739518 -204785060 - L2 LINE L2 -7 3265 3173 2842 201 27 55 chr3 22740391 22741232 -204783346 - LTR5 LTR ERVK 0 969 152 283 409 0 24 chr3 22741782 22741909 -204782669 + L2 LINE L2 3143 3266 -6 185 420 0 0 chr3 22742138 22742219 -204782359 + MIR SINE MIR 19 99 -109 496 311 30 0 chr3 22742465 22742629 -204781949 + MIR SINE MIR 88 256 -6 847 96 0 59 chr3 22742867 22743003 -204781575 + L1M3 LINE L1 5454 5581 -590 192 123 82 0 chr3 22743181 22743254 -204781324 + (TA)n Simple_repeat Simple_repeat 2 80 0 854 247 119 24 chr3 22743484 22743999 -204780579 + MLT1G1 LTR MaLR 1 515 -15 1351 131 58 0 chr3 22744289 22744549 -204780029 + MER33 DNA MER1_type 37 311 -13 1830 213 52 56 chr3 22745118 22745588 -204778990 + Charlie1b DNA MER1_type 1 470 -2291 1744 156 19 6 chr3 22745588 22745908 -204778670 + L1MA9 LINE L1 5984 6307 -5 1830 213 52 56 chr3 22745908 22745958 -204778620 + Charlie1b DNA MER1_type 470 519 -4 281 311 102 22 chr3 22748077 22748278 -204776300 + MIR SINE MIR 30 244 -18 24 0 0 0 chr3 22748506 22748530 -204776048 + AT_rich Low_complexity Low_complexity 1 24 0 268 267 27 0 chr3 22749061 22749136 -204775442 + MLT1I LTR MaLR 1 77 -332 827 248 181 26 chr3 22749201 22749471 -204775107 + MLT1I LTR MaLR 88 399 -10 387 290 34 34 chr3 22749638 22749845 -204774733 - L1ME LINE L1 -389 5732 5526 509 344 44 6 chr3 22750050 22750233 -204774345 + MER91A DNA MER1_type 2 191 -5 254 328 0 0 chr3 22750804 22750868 -204773710 + polypurine Low_complexity Low_complexity 4 67 0 267 198 55 0 chr3 22750887 22750978 -204773600 + GA-rich Low_complexity Low_complexity 1 96 0 232 234 187 28 chr3 22751755 22751862 -204772716 + L2 LINE L2 3189 3312 -1 420 221 100 57 chr3 22752386 22752526 -204772052 + MLT1I LTR MaLR 404 549 0 190 393 160 19 chr3 22752533 22752846 -204771732 + L2 LINE L2 2915 3271 -1 312 197 56 0 chr3 22753211 22753282 -204771296 + MER94 DNA DNA 48 122 -12 259 297 0 55 chr3 22753812 22753903 -204770675 + MIR3 SINE MIR 122 207 -1 1374 186 52 42 chr3 22754357 22754663 -204769915 + AluJo SINE Alu 1 309 -3 382 287 72 63 chr3 22754715 22754938 -204769640 + MIR SINE MIR 4 228 -34 302 237 10 0 chr3 22755514 22755611 -204768967 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 22755613 22755701 -204768877 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 459 223 273 0 chr3 22755704 22755843 -204768735 + MER5A DNA MER1_type 9 185 -4 6835 58 9 43 chr3 22756890 22757877 -204766701 - SVA Other Other 0 1386 433 5690 77 31 15 chr3 22757890 22758841 -204765737 - SVA Other Other -520 866 1 725 241 52 94 chr3 22759083 22759126 -204765452 - HAL1 LINE L1 -100 2407 2364 2498 61 3 0 chr3 22759126 22759423 -204765155 - AluY SINE Alu -12 299 2 725 241 52 94 chr3 22759423 22759485 -204765093 - HAL1 LINE L1 -143 2364 2301 1990 149 10 19 chr3 22759485 22759794 -204764784 - AluJo SINE Alu -6 306 1 725 241 52 94 chr3 22759794 22760069 -204764509 - HAL1 LINE L1 -206 2301 2042 234 282 68 8 chr3 22760159 22760276 -204764302 - L1ME2 LINE L1 -2 6162 6039 416 176 110 0 chr3 22760796 22760887 -204763691 + MER58C DNA MER1_type 113 213 -2 376 130 0 0 chr3 22760952 22761006 -204763572 + MER66A LTR ERV1 287 340 -138 304 272 54 22 chr3 22762460 22762552 -204762026 + L2 LINE L2 3206 3300 -13 536 249 157 19 chr3 22762662 22762923 -204761655 + L1ME4a LINE L1 5531 5827 -294 1877 186 0 3 chr3 22762986 22763293 -204761285 - AluJb SINE Alu -6 306 1 450 214 83 36 chr3 22763308 22763476 -204761102 + L1ME4a LINE L1 5946 6121 0 671 208 193 24 chr3 22763671 22763883 -204760695 + MIR SINE MIR 5 252 -10 336 257 59 33 chr3 22763928 22764080 -204760498 + L1ME4a LINE L1 5573 5728 -393 351 216 29 20 chr3 22764199 22764301 -204760277 + L1ME4a LINE L1 5786 5888 -233 572 249 11 58 chr3 22764325 22764514 -204760064 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 22764744 22764793 -204759785 + AT_rich Low_complexity Low_complexity 1 48 -23 2277 100 7 0 chr3 22764793 22765094 -204759484 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 22765094 22765118 -204759460 + AT_rich Low_complexity Low_complexity 48 71 0 581 177 0 146 chr3 22765690 22765848 -204758730 + FLAM_C SINE Alu 2 136 -7 563 273 136 14 chr3 22765926 22766146 -204758432 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 22766292 22766333 -204758245 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 22766521 22766552 -204758026 + AT_rich Low_complexity Low_complexity 1 31 0 3167 83 40 11 chr3 22767141 22767588 -204756990 + L1PA14 LINE L1 5700 6159 -2 757 186 111 42 chr3 22768040 22768278 -204756300 + MER33 DNA MER1_type 1 242 -82 1269 62 0 12 chr3 22768279 22768439 -204756139 - AluSp/q SINE Alu 0 313 156 481 173 25 0 chr3 22769773 22769854 -204754724 + MER5A DNA MER1_type 30 112 -77 933 194 31 47 chr3 22769906 22770097 -204754481 - MER5A DNA MER1_type 0 189 2 2338 85 0 0 chr3 22770253 22770546 -204754032 - AluSg SINE Alu -17 293 1 1358 173 35 0 chr3 22770747 22770973 -204753605 - MER46A DNA MER2_type -1 235 2 204 280 103 28 chr3 22771810 22771917 -204752661 + MIR SINE MIR 37 151 -111 2262 98 3 13 chr3 22772752 22773068 -204751510 + AluSp SINE Alu 1 313 0 2572 117 0 18 chr3 22774206 22774549 -204750029 - MER1B DNA MER1_type 0 337 1 1569 186 13 52 chr3 22774591 22774898 -204749680 + AluJo SINE Alu 1 295 -17 3311 119 75 128 chr3 22775260 22776052 -204748526 - Tigger3(Golem) DNA MER2_type -1 3028 2279 549 229 0 9 chr3 22776045 22776154 -204748424 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1772 139 28 24 chr3 22776406 22776693 -204747885 + AluJo SINE Alu 1 288 -24 23 0 0 0 chr3 22776765 22776788 -204747790 + AT_rich Low_complexity Low_complexity 1 23 0 2413 81 7 3 chr3 22776824 22777133 -204747445 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 22777569 22777593 -204746985 + (T)n Simple_repeat Simple_repeat 1 24 0 354 313 181 6 chr3 22778387 22778553 -204746025 - MIR SINE MIR -48 214 20 856 156 6 60 chr3 22778805 22778972 -204745606 + MER3 DNA MER1_type 1 158 -51 2025 145 0 0 chr3 22779642 22779938 -204744640 + AluJb SINE Alu 2 297 -15 212 337 147 18 chr3 22781185 22781458 -204743120 + L2 LINE L2 2669 2976 -338 763 291 199 12 chr3 22781579 22782027 -204742551 - L2 LINE L2 -3 3310 2783 1013 272 110 53 chr3 22782077 22782440 -204742138 - L2 LINE L2 -998 2316 1903 1780 74 4 13 chr3 22782440 22782671 -204741907 + L1PA14 LINE L1 5927 6155 -6 1013 272 110 53 chr3 22782671 22782914 -204741664 - L2 LINE L2 -1411 1903 1675 194 250 159 11 chr3 22782914 22783002 -204741576 + L2 LINE L2 3182 3282 -31 311 277 50 43 chr3 22783083 22783224 -204741354 - MIR SINE MIR -43 219 78 323 249 66 76 chr3 22783451 22783648 -204740930 + L1ME4a LINE L1 5704 5898 -223 27 49 0 0 chr3 22783870 22783911 -204740667 + AT_rich Low_complexity Low_complexity 1 41 0 2026 127 13 13 chr3 22784659 22784958 -204739620 - AluSx SINE Alu -13 299 1 344 352 62 25 chr3 22785151 22785313 -204739265 - MIR3 SINE MIR -13 195 28 689 285 107 0 chr3 22786249 22786512 -204738066 + L1ME3A LINE L1 4824 5114 -1032 2833 40 3 9 chr3 22786563 22786932 -204737646 + L1PA2 LINE L1 5813 6179 0 499 238 147 113 chr3 22786973 22787415 -204737163 + L1ME3A LINE L1 5714 6170 0 1744 151 13 38 chr3 22787432 22787750 -204736828 + AluJb SINE Alu 3 312 0 307 336 96 18 chr3 22788233 22788462 -204736116 - L1M4 LINE L1 -1103 5043 4797 2065 116 13 39 chr3 22788483 22788794 -204735784 - AluSx SINE Alu -9 303 1 585 188 37 126 chr3 22788797 22788974 -204735604 - MLT1B LTR MaLR -216 158 4 389 291 101 32 chr3 22789058 22789216 -204735362 - MIR3 SINE MIR -9 199 31 239 184 40 53 chr3 22789419 22789495 -204735083 - LTR33A LTR ERVL -152 371 297 306 278 28 46 chr3 22789742 22789850 -204734728 - LTR33A LTR ERVL -361 162 57 900 157 0 8 chr3 22789886 22790020 -204734558 + FLAM_C SINE Alu 1 133 0 1736 207 50 16 chr3 22790357 22790734 -204733844 - MLT1B LTR MaLR 0 390 1 2075 120 13 17 chr3 22790777 22791078 -204733500 - AluSx SINE Alu -12 300 1 206 323 0 0 chr3 22792536 22792601 -204731977 + (CTG)n Simple_repeat Simple_repeat 1 65 0 369 219 133 0 chr3 22794273 22794378 -204730200 + MIR3 SINE MIR 45 163 -45 349 291 108 25 chr3 22794660 22794818 -204729760 - MIR SINE MIR 0 262 92 430 209 55 9 chr3 22794867 22794977 -204729601 + MER103 DNA DNA 50 164 -2 917 201 86 0 chr3 22795708 22795882 -204728696 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 22798641 22798679 -204725899 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 2090 95 14 3 chr3 22798723 22799008 -204725570 + AluSc SINE Alu 3 290 -19 2042 140 0 0 chr3 22799017 22799303 -204725275 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 22799303 22799342 -204725236 + (TA)n Simple_repeat Simple_repeat 2 40 0 1007 248 91 22 chr3 22800527 22800890 -204723688 + LTR37A LTR ERV1 39 426 0 1479 150 35 35 chr3 22801572 22801859 -204722719 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr3 22801931 22801954 -204722624 + AT_rich Low_complexity Low_complexity 1 23 0 2259 81 10 3 chr3 22801990 22802298 -204722280 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 22802734 22802758 -204721820 + (T)n Simple_repeat Simple_repeat 1 24 0 412 283 182 31 chr3 22803552 22803740 -204720838 - MIR SINE MIR -48 214 3 839 156 6 60 chr3 22803971 22804138 -204720440 + MER3 DNA MER1_type 1 158 -51 358 96 0 0 chr3 22805177 22805229 -204719349 + MADE1 DNA Mariner 29 80 0 605 205 93 25 chr3 22805351 22805495 -204719083 + MER3 DNA MER1_type 1 112 -50 1837 156 0 0 chr3 22805495 22805783 -204718795 + AluJb SINE Alu 1 288 -24 605 205 93 25 chr3 22805783 22805799 -204718779 + MER3 DNA MER1_type 112 125 -37 626 87 0 39 chr3 22805806 22805909 -204718669 - AluSc SINE Alu -13 296 198 333 143 0 0 chr3 22805922 22805971 -204718607 + MER3 DNA MER1_type 161 209 0 547 252 16 0 chr3 22806783 22806906 -204717672 + MER94 DNA DNA 10 134 0 1390 204 77 34 chr3 22807530 22807883 -204716695 - L1MC4 LINE L1 -159 7883 7516 2351 68 0 0 chr3 22807894 22808186 -204716392 - AluSg SINE Alu -7 303 12 340 222 61 40 chr3 22808293 22808392 -204716186 + U13 snRNA snRNA 1 101 -3 324 301 113 8 chr3 22809579 22809712 -204714866 + MIR SINE MIR 61 207 -55 2196 107 0 0 chr3 22809931 22810231 -204714347 + AluSg SINE Alu 1 300 -10 744 179 0 57 chr3 22810238 22810378 -204714200 + FLAM_C SINE Alu 1 132 -1 2334 76 0 0 chr3 22810382 22810686 -204713892 + AluY SINE Alu 2 305 -6 892 251 116 19 chr3 22810708 22811027 -204713551 + MLT1G1 LTR MaLR 246 595 0 303 291 68 17 chr3 22811027 22811144 -204713434 + L2 LINE L2 2883 3005 -308 999 255 97 118 chr3 22811213 22811731 -204712847 + MLT1K LTR MaLR 57 563 -25 398 147 15 0 chr3 22811780 22811848 -204712730 - MER116 DNA Mariner 0 80 12 248 360 43 43 chr3 22811852 22811953 -204712625 - L3 LINE CR1 -113 1464 1364 1356 196 60 4 chr3 22811953 22812218 -204712360 + AluJo SINE Alu 3 282 -30 447 52 0 0 chr3 22812225 22812283 -204712295 + (CA)n Simple_repeat Simple_repeat 2 59 0 248 360 43 43 chr3 22812283 22812337 -204712241 - L3 LINE CR1 -218 1359 1301 216 266 102 31 chr3 22812456 22812584 -204711994 - L3 LINE CR1 -656 921 785 495 92 0 0 chr3 22812593 22812658 -204711920 - AluJ/FRAM SINE Alu -15 297 233 490 316 96 36 chr3 22812809 22813059 -204711519 - L3 LINE CR1 -877 700 436 868 302 115 12 chr3 22813128 22813529 -204711049 - MLT1J2 LTR MaLR -8 442 1 539 101 13 0 chr3 22816572 22816651 -204707927 - AluSc SINE Alu -228 81 2 1438 169 20 24 chr3 22816680 22816975 -204707603 + AluJo SINE Alu 1 294 -18 1982 131 0 10 chr3 22816977 22817275 -204707303 + AluSx SINE Alu 1 295 -17 310 241 145 28 chr3 22819426 22819571 -204705007 - MIR SINE MIR -17 245 84 1005 106 0 0 chr3 22820654 22820795 -204703783 - AluJb SINE Alu -171 141 1 532 217 68 62 chr3 22821025 22821186 -204703392 + MER5B DNA MER1_type 4 165 -13 206 323 0 0 chr3 22822782 22822847 -204701731 + (CTG)n Simple_repeat Simple_repeat 1 65 0 376 221 97 71 chr3 22824511 22824665 -204699913 + MIR3 SINE MIR 34 168 -40 386 291 108 25 chr3 22824905 22825063 -204699515 - MIR SINE MIR 0 262 92 427 209 55 9 chr3 22825112 22825222 -204699356 + MER103 DNA DNA 50 164 -2 866 201 86 0 chr3 22825954 22826128 -204698450 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 22828887 22828925 -204695653 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 1992 95 14 3 chr3 22828969 22829254 -204695324 + AluSc SINE Alu 3 290 -19 1946 140 0 0 chr3 22829263 22829549 -204695029 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 22829549 22829588 -204694990 + (TA)n Simple_repeat Simple_repeat 2 40 0 976 243 91 19 chr3 22830773 22831135 -204693443 + LTR37A LTR ERV1 39 426 0 1997 103 0 7 chr3 22831819 22832100 -204692478 + AluSx SINE Alu 1 279 -33 486 0 0 0 chr3 22832100 22832154 -204692424 + (CA)n Simple_repeat Simple_repeat 1 54 0 419 287 69 0 chr3 22834243 22834344 -204690234 + MER91C DNA MER1_type 1 108 -32 1748 172 55 44 chr3 22835308 22835669 -204688909 + MLT1A1 LTR MaLR 1 365 0 411 309 42 16 chr3 22836849 22837040 -204687538 - MIR3 SINE MIR -11 197 2 577 184 92 36 chr3 22837204 22837244 -204687334 + MER33 DNA MER1_type 29 65 -2520 2123 105 20 0 chr3 22837244 22837538 -204687040 + AluSx SINE Alu 1 300 -12 577 184 92 36 chr3 22837538 22837693 -204686885 + MER33 DNA MER1_type 65 235 -89 1254 229 57 7 chr3 22837693 22837972 -204686606 + AluJo SINE Alu 2 294 -8 2199 105 0 3 chr3 22837993 22838288 -204686290 + AluSg SINE Alu 1 294 -16 248 297 0 11 chr3 22838299 22838390 -204686188 + MER33 DNA MER1_type 230 319 -5 373 179 15 0 chr3 22838591 22838658 -204685920 + MER66A LTR ERV1 411 478 0 346 216 0 181 chr3 22838666 22838837 -204685741 - L1MEd LINE L1 -5092 1027 888 2266 97 0 0 chr3 22838850 22839150 -204685428 + AluSg SINE Alu 6 305 -5 186 43 0 0 chr3 22839287 22839310 -204685268 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 293 288 38 72 chr3 22839331 22839461 -204685117 - L1MEd LINE L1 -5306 813 693 1922 128 27 3 chr3 22839461 22839757 -204684821 - AluSx SINE Alu -9 303 1 293 288 38 72 chr3 22839757 22839862 -204684716 - L1MEd LINE L1 -5426 693 586 247 333 28 0 chr3 22840238 22840310 -204684268 + MIR3 SINE MIR 82 155 -53 467 289 160 0 chr3 22840315 22840471 -204684107 - MER5A DNA MER1_type 0 189 9 188 359 26 0 chr3 22840548 22840626 -204683952 + L2 LINE L2 2973 3052 -220 298 292 14 0 chr3 22840726 22840798 -204683780 + L2 LINE L2 3241 3313 0 2477 43 0 0 chr3 22841333 22841633 -204682945 - AluY SINE Alu -11 300 1 1863 129 0 18 chr3 22842423 22842709 -204681869 + AluSx SINE Alu 1 281 -31 468 0 0 0 chr3 22842709 22842761 -204681817 + (CA)n Simple_repeat Simple_repeat 1 52 0 419 287 69 0 chr3 22844849 22844950 -204679628 - MER91C DNA MER1_type 0 140 33 1748 172 55 44 chr3 22845913 22846274 -204678304 + MLT1A1 LTR MaLR 1 365 0 411 309 42 16 chr3 22847453 22847644 -204676934 - MIR3 SINE MIR -11 197 2 571 185 92 36 chr3 22847808 22847848 -204676730 + MER33 DNA MER1_type 29 65 -2520 2123 105 20 0 chr3 22847848 22848142 -204676436 + AluSx SINE Alu 1 300 -12 571 185 92 36 chr3 22848142 22848296 -204676282 + MER33 DNA MER1_type 65 234 -90 944 249 65 0 chr3 22848296 22848557 -204676021 + AluJo SINE Alu 1 278 -34 245 220 47 33 chr3 22848748 22848898 -204675680 - L1M4 LINE L1 -1703 4443 4292 30 45 0 0 chr3 22849347 22849391 -204675187 + AT_rich Low_complexity Low_complexity 1 44 0 258 333 38 57 chr3 22849536 22849746 -204674832 - L2 LINE L2 -109 3163 2958 625 242 62 11 chr3 22849845 22850023 -204674555 - MER5A DNA MER1_type -2 187 1 1647 99 0 5 chr3 22850486 22850708 -204673870 + AluSq SINE Alu 1 221 -92 * 2120 102 0 4 chr3 22850707 22850982 -204673596 + AluSx SINE Alu 24 297 -15 384 163 174 81 chr3 22851658 22851830 -204672748 - MER53 DNA DNA 0 189 2 2452 89 3 0 chr3 22852835 22853138 -204671440 + AluSp SINE Alu 1 304 -9 192 171 29 0 chr3 22853905 22853940 -204670638 - L2 LINE L2 -14 3299 3264 225 257 68 152 chr3 22853943 22854064 -204670514 + MIR SINE MIR 33 126 -136 2487 99 0 0 chr3 22854064 22854376 -204670202 + AluSx SINE Alu 1 312 0 225 257 68 152 chr3 22854376 22854491 -204670087 + MIR SINE MIR 126 249 -13 297 0 0 0 chr3 22854559 22854592 -204669986 + (TG)n Simple_repeat Simple_repeat 1 33 0 215 250 21 0 chr3 22854622 22854670 -204669908 + MIR SINE MIR 196 244 -18 225 133 44 0 chr3 22854677 22854722 -204669856 + CT-rich Low_complexity Low_complexity 1 47 0 2368 211 2 2 chr3 22855464 22855915 -204668663 - MER82 DNA MER2_type 0 653 203 1095 197 5 0 chr3 22856239 22856432 -204668146 - MER82 DNA MER2_type -459 194 1 255 61 0 0 chr3 22856605 22856638 -204667940 + (CA)n Simple_repeat Simple_repeat 1 33 0 380 296 43 9 chr3 22856719 22856834 -204667744 + L2 LINE L2 3194 3312 -1 1617 185 39 45 chr3 22856956 22857264 -204667314 - AluJb SINE Alu -6 306 1 667 257 170 44 chr3 22857821 22858226 -204666352 + MLT1H LTR MaLR 94 549 0 1893 141 31 10 chr3 22858230 22858520 -204666058 - AluJo SINE Alu -1 311 16 391 184 54 12 chr3 22858525 22858627 -204665951 - MIR SINE MIR -46 162 50 1876 121 80 39 chr3 22858837 22859225 -204665353 + L1MB3 LINE L1 5740 6143 -40 257 200 0 0 chr3 22859247 22859297 -204665281 + L1MB2 LINE L1 6115 6164 -7 1231 183 5 36 chr3 22859751 22859975 -204664603 - AluJo SINE Alu -10 302 86 513 194 62 44 chr3 22860226 22860386 -204664192 - L1MC4 LINE L1 -139 7903 7741 700 275 116 72 chr3 22861630 22862019 -204662559 - L2 LINE L2 0 3313 2908 251 343 84 14 chr3 22862257 22862400 -204662178 - L3b LINE CR1 -100 1483 1331 2246 103 3 19 chr3 22863058 22863370 -204661208 - AluSx SINE Alu -5 307 1 203 196 22 0 chr3 22863600 22863646 -204660932 + L2 LINE L2 3210 3256 -16 189 171 0 0 chr3 22863942 22863977 -204660601 + A-rich Low_complexity Low_complexity 1 35 0 652 240 13 7 chr3 22864635 22864789 -204659789 + MER3 DNA MER1_type 1 155 -54 2164 131 0 0 chr3 22864792 22865090 -204659488 + AluSx SINE Alu 4 301 -11 1426 105 5 0 chr3 22865197 22865387 -204659191 + AluSg/x SINE Alu 106 296 -16 25 0 0 0 chr3 22865394 22865419 -204659159 + AT_rich Low_complexity Low_complexity 1 25 0 317 313 129 79 chr3 22865622 22866025 -204658553 - L2 LINE L2 -14 3258 2836 2455 70 0 10 chr3 22866331 22866633 -204657945 + AluY SINE Alu 1 299 -12 610 189 9 0 chr3 22866661 22866797 -204657781 + AluJb SINE Alu 180 316 0 2008 137 3 17 chr3 22866929 22867229 -204657349 - AluSx SINE Alu -16 296 1 302 265 88 52 chr3 22867727 22867863 -204656715 + MIR SINE MIR 110 250 -12 237 235 68 53 chr3 22868295 22868427 -204656151 + MER102b DNA MER1_type 200 333 -8 723 284 15 20 chr3 22868507 22868711 -204655867 - MIR SINE MIR -17 245 43 243 293 13 0 chr3 22869130 22869205 -204655373 + HAL1 LINE L1 1651 1726 -781 * 602 234 117 12 chr3 22869194 22869450 -204655128 + HAL1 LINE L1 2072 2354 -153 270 30 0 0 chr3 22869594 22869627 -204654951 - U2 snRNA snRNA -155 33 1 982 205 24 0 chr3 22869631 22869797 -204654781 - FAM SINE Alu -3 172 3 193 260 14 82 chr3 22869832 22869905 -204654673 - L2 LINE L2 -575 2739 2672 * 216 254 0 18 chr3 22869877 22869932 -204654646 - MER5B DNA MER1_type -105 73 20 265 290 0 75 chr3 22871345 22871438 -204653140 - L2 LINE L2 0 3272 3187 454 360 40 18 chr3 22871565 22871793 -204652785 - MIR SINE MIR -10 252 20 1575 144 0 0 chr3 22871849 22872078 -204652500 + AluJb SINE Alu 1 229 -83 1147 151 0 22 chr3 22872530 22872709 -204651869 - AluJ SINE Alu -9 303 129 844 137 0 38 chr3 22872727 22872858 -204651720 + FLAM_C SINE Alu 1 126 -7 524 120 40 0 chr3 22872870 22872945 -204651633 - AluJ SINE Alu -176 136 59 1956 147 23 0 chr3 22873361 22873661 -204650917 - AluJb SINE Alu -1 311 5 2718 149 11 7 chr3 22874027 22874484 -204650094 + LTR32 LTR ERVL 12 470 -1 2097 97 4 0 chr3 22874640 22874907 -204649671 + AluSq SINE Alu 5 272 -41 4514 72 40 2 chr3 22874908 22875491 -204649087 - LTR14B LTR ERVK 0 608 4 989 232 29 37 chr3 22875691 22875932 -204648646 - MER8 DNA MER2_type 0 239 1 638 176 21 114 chr3 22875932 22876041 -204648537 + Charlie4 DNA MER1_type 1778 1866 -95 1822 177 0 32 chr3 22876041 22876351 -204648227 + AluJb SINE Alu 1 300 -12 638 176 21 114 chr3 22876351 22876423 -204648155 + Charlie4 DNA MER1_type 1866 1943 -18 244 235 39 0 chr3 22876541 22876592 -204647986 + MIR SINE MIR 29 81 -181 550 215 83 14 chr3 22876637 22876781 -204647797 + MIR SINE MIR 70 223 -39 2239 119 0 0 chr3 22876954 22877247 -204647331 + AluSx SINE Alu 1 293 -19 600 279 59 10 chr3 22877293 22877497 -204647081 - LTR16C LTR ERVL 0 491 278 942 206 47 12 chr3 22878686 22878943 -204645635 + L1ME1 LINE L1 5846 6111 -55 2232 118 7 0 chr3 22878994 22879291 -204645287 + AluSx SINE Alu 1 299 -13 335 91 0 0 chr3 22879292 22879336 -204645242 + Alu SINE Alu 1 44 -258 229 132 0 0 chr3 22879416 22879454 -204645124 - Charlie5 DNA MER1_type -27 2585 2548 1285 194 18 122 chr3 22879458 22879787 -204644791 - AluJb SINE Alu -7 295 1 24 0 0 0 chr3 22879792 22879816 -204644762 + AT_rich Low_complexity Low_complexity 1 24 0 977 132 7 0 chr3 22879819 22879955 -204644623 + AluSq/x SINE Alu 1 137 -176 2284 113 0 3 chr3 22879956 22880248 -204644330 + AluSg SINE Alu 4 294 -16 243 297 0 11 chr3 22880259 22880350 -204644228 + Charlie5 DNA MER1_type 2491 2580 -32 630 109 11 0 chr3 22882412 22882504 -204642074 + MLT1A2 LTR MaLR 1 93 -281 1229 102 0 68 chr3 22882507 22882547 -204642031 - MSTA LTR MaLR -2 426 385 2190 131 0 10 chr3 22882547 22882861 -204641717 + AluSx SINE Alu 1 311 -1 1229 102 0 68 chr3 22882861 22883025 -204641553 - MSTA LTR MaLR -43 385 236 1068 162 0 0 chr3 22883070 22883237 -204641341 - AluSx SINE Alu -2 310 144 1021 104 0 56 chr3 22883296 22883440 -204641138 - AluSx SINE Alu -176 136 1 906 196 42 0 chr3 22883440 22883629 -204640949 - MSTA LTR MaLR -231 197 1 403 174 0 0 chr3 22883629 22883698 -204640880 + MLT1A2 LTR MaLR 90 158 -216 2233 109 13 0 chr3 22884326 22884628 -204639950 + AluSq SINE Alu 1 306 -7 402 253 167 43 chr3 22884863 22885025 -204639553 - MIR3 SINE MIR -17 191 10 2184 78 19 85 chr3 22885539 22885858 -204638720 - AluSq SINE Alu -15 298 1 2319 116 0 0 chr3 22887479 22887782 -204636796 + AluSq SINE Alu 6 308 -5 323 271 32 65 chr3 22888131 22888286 -204636292 + L1MC5 LINE L1 7763 7912 -49 484 36 0 0 chr3 22889774 22889830 -204634748 - AluSg/x SINE Alu -174 136 81 2036 108 0 18 chr3 22890307 22890593 -204633985 + AluSq SINE Alu 1 281 -32 470 259 121 20 chr3 22891234 22891539 -204633039 + L1MC5 LINE L1 7609 7944 -17 2083 138 3 0 chr3 22891702 22892000 -204632578 + AluSx SINE Alu 1 299 -13 233 390 40 0 chr3 22892179 22892279 -204632299 - L3b LINE CR1 -184 1399 1296 315 219 184 9 chr3 22892504 22892618 -204631960 - MIR3 SINE MIR -38 170 37 231 356 79 0 chr3 22893637 22893738 -204630840 + L2 LINE L2 3200 3308 -5 1860 153 27 20 chr3 22895131 22895432 -204629146 - AluJb SINE Alu -9 303 1 187 237 0 26 chr3 22895511 22895549 -204629029 - L2 LINE L2 -86 3186 3150 791 220 49 4 chr3 22895565 22895769 -204628809 + MIR SINE MIR 27 238 -24 1028 185 34 15 chr3 22896054 22896259 -204628319 + MER3 DNA MER1_type 1 209 0 2138 189 12 24 chr3 22896520 22896939 -204627639 - MLT2D LTR ERVL 0 414 1 1733 147 62 7 chr3 22897062 22897354 -204627224 + AluJb SINE Alu 1 308 -4 797 252 125 49 chr3 22897749 22898221 -204626357 + MLT1J LTR MaLR 2 509 -2 2113 111 31 14 chr3 22898707 22898834 -204625744 + AluSx SINE Alu 1 124 -188 2358 96 7 3 chr3 22898834 22899137 -204625441 + AluSg SINE Alu 1 304 -6 2113 111 31 14 chr3 22899137 22899297 -204625281 + AluSx SINE Alu 124 293 -19 459 276 97 42 chr3 22899588 22899805 -204624773 + MLT1K LTR MaLR 162 390 -198 182 361 62 0 chr3 22900468 22900565 -204624013 + MIR SINE MIR 94 196 -66 250 340 11 0 chr3 22900891 22900985 -204623593 + MIR SINE MIR 168 262 0 583 297 80 25 chr3 22901035 22901274 -204623304 - MIR SINE MIR -7 255 4 1838 163 3 36 chr3 22901332 22901638 -204622940 - AluSx SINE Alu -16 296 1 199 333 11 46 chr3 22902077 22902164 -204622414 - L3b LINE CR1 -63 1520 1437 811 245 96 71 chr3 22902234 22902764 -204621814 + MLT1H1 LTR MaLR 2 555 0 450 0 0 0 chr3 22903372 22903422 -204621156 + (CA)n Simple_repeat Simple_repeat 2 51 0 238 263 114 0 chr3 22904350 22904464 -204620114 - L1ME4a LINE L1 -21 6100 5974 328 211 133 37 chr3 22904470 22904670 -204619908 - MER5C DNA MER1_type -4 320 41 2169 125 7 0 chr3 22904702 22904999 -204619579 + AluSx SINE Alu 1 299 -13 2072 131 10 0 chr3 22905335 22905633 -204618945 + AluJo SINE Alu 1 301 -11 1755 133 16 0 chr3 22905639 22905887 -204618691 + AluSx SINE Alu 1 252 -60 315 0 0 0 chr3 22905907 22905942 -204618636 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 605 215 37 0 chr3 22906525 22906660 -204617918 - MIR SINE MIR -118 144 5 301 298 162 44 chr3 22907013 22907241 -204617337 + L2 LINE L2 3006 3260 -12 512 298 186 21 chr3 22908088 22908508 -204616070 + L2 LINE L2 2820 3308 -5 1812 166 7 3 chr3 22908514 22908809 -204615769 + AluSx SINE Alu 1 296 -16 1709 192 99 12 chr3 22909325 22909846 -204614732 - MER82 DNA MER2_type -9 644 23 2113 70 0 114 chr3 22909857 22910199 -204614379 + AluSg SINE Alu 1 303 -7 286 300 67 0 chr3 22910428 22910518 -204614060 + L2 LINE L2 3193 3288 -25 970 217 65 7 chr3 22910587 22910863 -204613715 + MER33 DNA MER1_type 28 319 -5 246 294 152 0 chr3 22911083 22911175 -204613403 + L2 LINE L2 3184 3289 -24 1515 156 0 43 chr3 22911227 22911484 -204613094 + AluJo SINE Alu 5 250 -62 435 196 0 62 chr3 22911660 22911772 -204612806 + MER3 DNA MER1_type 52 156 -53 1152 141 0 0 chr3 22911776 22911939 -204612639 + AluSg/x SINE Alu 133 295 -17 272 196 18 0 chr3 22911941 22911997 -204612581 + MER3 DNA MER1_type 153 209 0 243 191 0 0 chr3 22915060 22915123 -204609455 + CT-rich Low_complexity Low_complexity 1 63 0 631 225 0 0 chr3 22916306 22916426 -204608152 + FLAM_C SINE Alu 8 127 -16 485 171 166 68 chr3 22917105 22917222 -204607356 - MER2 DNA MER2_type 0 345 241 789 132 0 37 chr3 22917222 22917358 -204607220 + FLAM_C SINE Alu 1 131 -2 485 171 166 68 chr3 22917358 22917445 -204607133 - MER2 DNA MER2_type -104 241 121 1445 169 0 5 chr3 22917455 22917674 -204606904 + AluJb SINE Alu 11 228 -84 405 245 15 21 chr3 22917824 22918151 -204606427 + G-rich Low_complexity Low_complexity 1 325 0 357 247 53 12 chr3 22918078 22918248 -204606330 + (CGGGG)n Simple_repeat Simple_repeat 2 178 0 * 906 284 120 18 chr3 22918300 22918757 -204605821 - L2 LINE L2 -1056 2258 1755 189 107 0 0 chr3 22918949 22918977 -204605601 + (A)n Simple_repeat Simple_repeat 1 28 0 1871 149 0 0 chr3 22919452 22919727 -204604851 + AluJb SINE Alu 35 309 -3 198 244 24 0 chr3 22919735 22919776 -204604802 - MIR SINE MIR -220 42 1 2992 102 9 11 chr3 22919840 22919899 -204604679 + L1PA15 LINE L1 5721 5779 -386 2146 126 30 0 chr3 22919899 22920200 -204604378 + AluSx SINE Alu 3 312 0 2992 102 9 11 chr3 22920200 22920573 -204604005 + L1PA15 LINE L1 5779 6152 -13 237 189 75 0 chr3 22920580 22920633 -204603945 - MER41A LTR ERV1 -98 456 400 2178 163 73 29 chr3 22920719 22921129 -204603449 + MSTA LTR MaLR 1 428 0 9930 159 16 16 chr3 22921129 22921478 -204603100 + MSTA-int LTR MaLR 1 349 -1302 2416 97 0 3 chr3 22921478 22921789 -204602789 + AluSg SINE Alu 1 310 0 9930 159 16 16 chr3 22921789 22923091 -204601487 + MSTA-int LTR MaLR 349 1651 0 2200 137 77 50 chr3 22923091 22923468 -204601110 + MSTA LTR MaLR 1 391 -37 2390 109 0 0 chr3 22923468 22923770 -204600808 - AluSg SINE Alu -8 302 1 2200 137 77 50 chr3 22923770 22923809 -204600769 + MSTA LTR MaLR 391 428 0 316 286 160 11 chr3 22923809 22923984 -204600594 + MIR SINE MIR 61 261 -1 2363 109 0 0 chr3 22924161 22924464 -204600114 + AluSg SINE Alu 1 303 -7 764 179 0 57 chr3 22924468 22924608 -204599970 + AluJo SINE Alu 1 132 -170 2014 92 3 35 chr3 22924612 22924928 -204599650 + AluY SINE Alu 2 307 -4 1566 235 3 3 chr3 22925228 22925534 -204599044 - AluJo SINE Alu -6 306 1 314 177 38 0 chr3 22926688 22926767 -204597811 + (CCCCG)n Simple_repeat Simple_repeat 2 83 0 227 130 19 0 chr3 22926787 22926841 -204597737 + C-rich Low_complexity Low_complexity 3 57 0 30 0 0 0 chr3 22926925 22926955 -204597623 + GC_rich Low_complexity Low_complexity 1 30 0 1139 169 0 0 chr3 22927135 22927313 -204597265 + AluJo SINE Alu 120 297 -15 1566 235 3 3 chr3 22927389 22927695 -204596883 - AluJo SINE Alu -6 306 1 358 303 56 79 chr3 22928608 22928875 -204595703 + LTR16C LTR ERVL 231 491 0 255 152 0 0 chr3 22928913 22928959 -204595619 + T-rich Low_complexity Low_complexity 1 46 0 2453 86 3 3 chr3 22929763 22930065 -204594513 - AluSp SINE Alu -11 302 1 1586 150 18 71 chr3 22930189 22930529 -204594049 - L1MC1 LINE L1 0 6333 6012 1881 169 0 26 chr3 22930689 22931002 -204593576 + AluJo SINE Alu 1 305 -7 1904 149 21 0 chr3 22931194 22931482 -204593096 + AluSx SINE Alu 1 294 -18 1449 176 23 46 chr3 22931735 22932042 -204592536 - AluJb SINE Alu -12 300 1 1775 158 23 20 chr3 22932417 22932721 -204591857 - AluJo SINE Alu -7 305 1 275 244 53 38 chr3 22932721 22932791 -204591787 - L1M4 LINE L1 -2256 3890 3816 720 238 59 25 chr3 22932791 22932993 -204591585 - MER63A DNA MER1_type -1 209 1 275 244 53 38 chr3 22932993 22933053 -204591525 - L1M4 LINE L1 -2330 3816 3758 609 243 35 7 chr3 22933155 22933299 -204591279 + MER5B DNA MER1_type 31 178 0 619 189 141 5 chr3 22933307 22933468 -204591110 - MER5A DNA MER1_type 0 189 4 490 343 60 16 chr3 22933499 22933747 -204590831 - L1M4 LINE L1 -2581 3565 3307 1727 175 10 29 chr3 22933780 22934088 -204590490 + AluJb SINE Alu 2 303 -9 462 313 31 19 chr3 22934291 22934451 -204590127 - L2 LINE L2 0 3313 3152 2015 113 60 0 chr3 22934451 22934733 -204589845 + AluSq SINE Alu 1 299 -14 2193 118 3 0 chr3 22934736 22935055 -204589523 + AluSp SINE Alu 1 320 0 25 0 0 0 chr3 22935380 22935405 -204589173 + GC_rich Low_complexity Low_complexity 1 25 0 1694 147 40 0 chr3 22936161 22936434 -204588144 + AluSx SINE Alu 22 305 -7 2020 138 17 0 chr3 22936529 22936826 -204587752 - AluJo SINE Alu -10 302 1 1760 167 74 54 chr3 22936864 22937366 -204587212 + Charlie1b DNA MER1_type 1 512 -11 556 287 21 5 chr3 22937450 22937638 -204586940 - MER113 DNA MER1_type? -96 425 235 2161 124 0 0 chr3 22937818 22938109 -204586469 + AluY SINE Alu 1 291 -20 649 191 38 0 chr3 22938135 22938266 -204586312 - MER2 DNA MER2_type -209 136 1 252 237 79 0 chr3 22938284 22938360 -204586218 + L1ME4a LINE L1 5936 6017 -104 1153 161 0 0 chr3 22938515 22938689 -204585889 + AluSp SINE Alu 137 310 -3 683 261 33 14 chr3 22938708 22938923 -204585655 - L2 LINE L2 -337 2977 2759 771 275 45 28 chr3 22939027 22939274 -204585304 - L2 LINE L2 -1886 1428 1178 583 319 10 0 chr3 22939338 22939542 -204585036 + L2 LINE L2 966 1171 -2143 282 167 0 0 chr3 22939543 22939585 -204584993 - Alu SINE Alu -266 42 1 2128 100 45 3 chr3 22939612 22939903 -204584675 - AluSg SINE Alu -7 303 1 1783 137 10 40 chr3 22940167 22940466 -204584112 + AluJo SINE Alu 16 305 -7 1740 192 0 3 chr3 22940588 22940879 -204583699 + AluJo SINE Alu 1 290 -22 2174 112 7 7 chr3 22941960 22942275 -204582303 + AluSx SINE Alu 3 312 0 754 98 0 0 chr3 22942277 22942379 -204582199 + U6 snRNA snRNA 1 102 -5 241 358 35 66 chr3 22942425 22942682 -204581896 + L3 LINE CR1 179 427 -1150 503 300 31 19 chr3 22942854 22943014 -204581564 - L2 LINE L2 0 3313 3152 2003 117 60 0 chr3 22943014 22943296 -204581282 + AluSq SINE Alu 1 299 -14 2193 118 3 0 chr3 22943299 22943618 -204580960 + AluSp SINE Alu 1 320 0 410 265 178 29 chr3 22943710 22943936 -204580642 + L2 LINE L2 2826 3112 -201 1915 126 91 31 chr3 22943936 22944286 -204580292 + THE1C LTR MaLR 3 373 -2 410 265 178 29 chr3 22944286 22944368 -204580210 + L2 LINE L2 3112 3180 -133 855 144 0 43 chr3 22944369 22944508 -204580070 - FLAM_C SINE Alu 0 133 1 1756 287 39 43 chr3 22944540 22945240 -204579338 - L2 LINE L2 -542 2772 2076 766 302 115 12 chr3 22945820 22946221 -204578357 + MLT1J2 LTR MaLR 1 442 -8 483 316 96 36 chr3 22946290 22946540 -204578038 + L3 LINE CR1 436 700 -877 500 92 0 0 chr3 22946691 22946756 -204577822 + AluJ/FRAM SINE Alu 233 297 -15 210 266 102 31 chr3 22946765 22946893 -204577685 + L3 LINE CR1 785 921 -656 250 360 43 43 chr3 22947012 22947066 -204577512 + L3 LINE CR1 1301 1354 -223 447 52 0 0 chr3 22947066 22947124 -204577454 + (TG)n Simple_repeat Simple_repeat 2 59 0 1491 196 60 4 chr3 22947131 22947396 -204577182 - AluJo SINE Alu -30 282 3 250 360 43 43 chr3 22947396 22947497 -204577081 + L3 LINE CR1 1359 1464 -113 381 147 15 0 chr3 22947501 22947569 -204577009 + MER116 DNA Mariner 12 80 0 869 257 97 118 chr3 22947618 22948136 -204576442 - MLT1K LTR MaLR -25 563 57 309 291 68 17 chr3 22948205 22948322 -204576256 - L2 LINE L2 -308 3005 2883 813 248 116 19 chr3 22948322 22948641 -204575937 - MLT1G1 LTR MaLR 0 595 246 2413 79 7 0 chr3 22948663 22948966 -204575612 - AluY SINE Alu -5 306 2 982 283 102 35 chr3 22949135 22949189 -204575389 - L2 LINE L2 -449 2865 2816 1122 203 37 5 chr3 22949189 22949406 -204575172 + MER58A DNA MER1_type 1 224 0 982 283 102 35 chr3 22949406 22949725 -204574853 - L2 LINE L2 -498 2816 2467 1932 149 6 35 chr3 22949959 22950274 -204574304 - AluSx SINE Alu -6 306 1 1456 165 12 35 chr3 22950684 22950962 -204573616 - AluJb SINE Alu 0 309 38 1874 165 35 0 chr3 22951172 22951457 -204573121 + AluSx SINE Alu 1 295 -17 2150 103 3 10 chr3 22951502 22951804 -204572774 + AluY SINE Alu 1 300 -11 296 292 14 0 chr3 22952339 22952411 -204572167 - L2 LINE L2 0 3313 3241 190 359 26 0 chr3 22952511 22952589 -204571989 - L2 LINE L2 -220 3052 2973 405 284 168 0 chr3 22952665 22952820 -204571758 + MER5A DNA MER1_type 9 189 0 186 338 42 0 chr3 22952825 22952896 -204571682 - MIR3 SINE MIR -53 155 82 321 286 12 0 chr3 22953272 22953356 -204571222 + L1MEd LINE L1 586 670 -5449 2008 135 20 3 chr3 22953377 22953674 -204570904 + AluSx SINE Alu 1 302 -10 1752 156 25 0 chr3 22953907 22954189 -204570389 + AluSx SINE Alu 1 289 -23 1801 137 23 42 chr3 22954448 22954754 -204569824 - AluJb SINE Alu -12 300 1 2036 123 30 7 chr3 22954840 22955142 -204569436 - AluSx SINE Alu 0 312 4 1014 118 7 0 chr3 22955143 22955279 -204569299 - AluSq/x SINE Alu -175 137 1 24 0 0 0 chr3 22955282 22955306 -204569272 + AT_rich Low_complexity Low_complexity 1 24 0 1223 194 18 122 chr3 22955311 22955640 -204568938 + AluJb SINE Alu 1 295 -7 238 132 0 0 chr3 22955644 22955682 -204568896 + Charlie5 DNA MER1_type 2548 2585 -27 352 91 0 0 chr3 22955762 22955806 -204568772 - Alu SINE Alu -258 44 1 2211 118 7 0 chr3 22955807 22956104 -204568474 - AluSx SINE Alu -13 299 1 1025 206 47 12 chr3 22956155 22956412 -204568166 - L1ME1 LINE L1 -55 6111 5846 1809 169 0 29 chr3 22957680 22957994 -204566584 - AluJo SINE Alu -7 305 1 1556 153 18 71 chr3 22958154 22958494 -204566084 + L1MC1 LINE L1 6012 6333 0 2296 108 3 0 chr3 22958618 22958913 -204565665 + AluSx SINE Alu 1 296 -16 3524 141 34 9 chr3 22958918 22959496 -204565082 - LTR8A LTR ERV1 -50 677 60 44235 46 4 2 chr3 22959496 22965562 -204559016 + L1PA4 LINE L1 20 6094 -61 516 190 213 9 chr3 22965955 22966116 -204558462 - MER41B LTR ERV1 -295 340 97 307 315 45 9 chr3 22966717 22966828 -204557750 + MER91A DNA MER1_type 1 115 -81 232 271 71 0 chr3 22966881 22966951 -204557627 + MER91A DNA MER1_type 120 194 -2 1410 183 67 14 chr3 22967387 22967464 -204557114 + AluJo SINE Alu 1 72 -240 1989 120 51 0 chr3 22967464 22967756 -204556822 - AluSx SINE Alu -5 307 1 1410 183 67 14 chr3 22967756 22967963 -204556615 + AluJo SINE Alu 72 300 -12 2079 107 13 10 chr3 22967981 22968281 -204556297 + AluSx SINE Alu 1 301 -11 235 315 39 22 chr3 22968308 22968486 -204556092 - L1ME4a LINE L1 -168 5953 5773 929 89 0 22 chr3 22968544 22968679 -204555899 + FLAM_C SINE Alu 2 133 0 487 209 165 71 chr3 22968696 22968856 -204555722 - MER58A DNA MER1_type -2221 199 19 2633 202 26 24 chr3 22968856 22969396 -204555182 - MER87 LTR ERV1 0 541 1 487 209 165 71 chr3 22969396 22969417 -204555161 - MER58A DNA MER1_type -2401 19 1 398 276 25 31 chr3 22969418 22969581 -204554997 - L1ME4a LINE L1 -376 5745 5584 879 193 6 12 chr3 22969693 22969859 -204554719 - AluJo SINE Alu -1 301 137 1744 164 31 0 chr3 22970036 22970329 -204554249 + AluJb SINE Alu 1 302 -10 312 276 46 11 chr3 22970329 22970416 -204554162 + HAL1 LINE L1 18 107 -2400 1838 139 14 3 chr3 22970446 22970734 -204553844 + L1MA7 LINE L1 5815 6105 -186 538 175 10 0 chr3 22970885 22970988 -204553590 + LTR49 LTR ERV1 492 595 0 853 126 0 70 chr3 22971050 22971193 -204553385 - AluJo SINE Alu -169 133 1 723 96 70 45 chr3 22971194 22971350 -204553228 + L1MA7 LINE L1 6128 6287 -4 1572 225 160 43 chr3 22971364 22972083 -204552495 + HAL1 LINE L1 146 948 -1559 1718 152 8 0 chr3 22972108 22972365 -204552213 + AluJo SINE Alu 5 263 -49 574 179 0 52 chr3 22972385 22972519 -204552059 - MER106B DNA MER1_type -925 134 8 700 169 25 81 chr3 22972608 22972768 -204551810 + LTR23 LTR ERV1 1 151 -286 661 76 227 8 chr3 22972841 22972960 -204551618 + LTR23 LTR ERV1 161 305 -132 2259 120 0 0 chr3 22972961 22973270 -204551308 + AluSx SINE Alu 1 309 -3 433 151 0 23 chr3 22973281 22973367 -204551211 + FLAM_A SINE Alu 58 141 -1 799 136 7 43 chr3 22973368 22973508 -204551070 + LTR23 LTR ERV1 298 432 -5 2398 143 16 3 chr3 22973540 22973924 -204550654 - MER41B LTR ERV1 0 635 247 3753 162 63 38 chr3 22973925 22974435 -204550143 - MER50 LTR ERV1 -23 711 177 2103 124 7 20 chr3 22974435 22974741 -204549837 - AluSq SINE Alu -9 304 3 3753 162 63 38 chr3 22974741 22974923 -204549655 - MER50 LTR ERV1 -557 177 1 1732 95 50 0 chr3 22974923 22975161 -204549417 - MER41B LTR ERV1 -385 250 1 1151 213 44 24 chr3 22975161 22975457 -204549121 - LTR48B LTR ERV1 -1 643 342 1850 155 14 17 chr3 22975462 22975569 -204549009 - AluJo SINE Alu -16 296 190 4747 98 4 51 chr3 22975569 22975735 -204548843 - LTR8 LTR ERV1 0 691 519 2207 106 0 0 chr3 22975735 22976056 -204548522 - AluSq SINE Alu 0 321 1 4747 98 4 51 chr3 22976056 22976613 -204547965 - LTR8 LTR ERV1 -172 519 1 1850 155 14 17 chr3 22976613 22976802 -204547776 - AluJo SINE Alu -122 190 1 479 160 66 28 chr3 22976802 22976908 -204547670 - FLAM_C SINE Alu -1 142 33 633 234 42 24 chr3 22976908 22977075 -204547503 - LTR29 LTR ERV1 -316 306 137 2419 74 7 13 chr3 22977184 22977494 -204547084 - AluSp SINE Alu -5 308 1 641 149 26 26 chr3 22977496 22977610 -204546968 - FRAM SINE Alu -9 167 54 232 204 0 0 chr3 22977634 22977678 -204546900 + Alu SINE Alu 255 298 -3 2195 122 0 0 chr3 22977796 22978083 -204546495 + AluSx SINE Alu 5 291 -21 244 77 103 0 chr3 22978095 22978131 -204546447 + LTR8A LTR ERV1 1 40 -687 897 249 59 135 chr3 22978131 22978990 -204545588 - LTR1B LTR ERV1 0 826 33 290 226 0 0 chr3 22978996 22979049 -204545529 + LTR8A LTR ERV1 40 92 -635 44235 45 5 1 chr3 22979154 22985261 -204539317 - L1PA4 LINE L1 -4 6151 20 3670 150 25 27 chr3 22985261 22985844 -204538734 + LTR8A LTR ERV1 60 668 -59 2255 115 0 0 chr3 22985844 22986140 -204538438 - AluSx SINE Alu -16 296 1 3670 150 25 27 chr3 22986140 22986200 -204538378 + LTR8A LTR ERV1 668 727 0 1492 176 0 8 chr3 22986212 22986457 -204538121 + AluJb SINE Alu 1 243 -69 3974 105 26 51 chr3 22986457 22987103 -204537475 + MER41B LTR ERV1 6 635 0 335 206 0 15 chr3 22987103 22987171 -204537407 + AluJb SINE Alu 235 301 -1 333 0 0 0 chr3 22987191 22987228 -204537350 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 305 33 26 chr3 22987283 22987434 -204537144 + HAL1 LINE L1 1274 1425 -1082 1032 191 72 139 chr3 22987440 22988146 -204536432 + LTR49 LTR ERV1 1 595 0 316 246 52 78 chr3 22988317 22988549 -204536029 - L1ME4a LINE L1 -3 6118 5893 1524 171 0 19 chr3 22988555 22988677 -204535901 - AluJb SINE Alu -59 253 130 2629 65 0 0 chr3 22988677 22988985 -204535593 - AluY SINE Alu -3 308 1 1524 171 0 19 chr3 22988985 22989120 -204535458 - AluJb SINE Alu -182 130 1 261 83 0 0 chr3 22989183 22989219 -204535359 + (A)n Simple_repeat Simple_repeat 1 36 0 3012 146 26 10 chr3 22989219 22989714 -204534864 + MER41B LTR ERV1 133 635 0 249 205 0 0 chr3 22989714 22989750 -204534828 - LTR8 LTR ERV1 -10 681 646 2098 212 70 60 chr3 22989779 22990098 -204534480 - LTR8 LTR ERV1 -15 676 362 2275 118 0 6 chr3 22990098 22990412 -204534166 + AluSx SINE Alu 1 312 0 2098 212 70 60 chr3 22990412 22990761 -204533817 - LTR8 LTR ERV1 -329 362 1 714 200 56 25 chr3 22990761 22990921 -204533657 - AluJo SINE Alu -146 166 2 3713 113 30 0 chr3 22991306 22991844 -204532734 - MER41A LTR ERV1 0 554 1 2084 125 0 26 chr3 22991986 22992297 -204532281 - AluSq SINE Alu -10 303 1 1070 148 6 28 chr3 22992311 22992487 -204532091 - FAM SINE Alu 0 175 4 240 294 34 34 chr3 22993439 22993558 -204531020 - MIR SINE MIR -48 214 96 244 293 0 13 chr3 22993639 22993714 -204530864 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 25 51 0 0 chr3 22993749 22993788 -204530790 + AT_rich Low_complexity Low_complexity 1 39 0 396 0 0 0 chr3 22994233 22994277 -204530301 + (TA)n Simple_repeat Simple_repeat 1 44 0 351 0 0 0 chr3 22994276 22994315 -204530263 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 1653 151 70 4 chr3 22994316 22994575 -204530003 - AluSx SINE Alu -35 277 2 1899 141 23 33 chr3 22994662 22994966 -204529612 - AluSx SINE Alu -11 301 1 787 211 88 44 chr3 22995780 22996007 -204528571 + L1ME3A LINE L1 5928 6164 -6 261 264 100 0 chr3 22996040 22996150 -204528428 - MIR SINE MIR -58 204 84 1120 164 4 58 chr3 22996209 22996435 -204528143 - AluJo SINE Alu -10 302 89 312 246 89 73 chr3 22997066 22997245 -204527333 + MIR3 SINE MIR 21 202 -6 634 166 58 37 chr3 22997828 22997969 -204526609 - MER44D DNA MER2_type -1883 604 467 1773 153 44 0 chr3 22997969 22998243 -204526335 - AluJb SINE Alu -13 299 14 634 166 58 37 chr3 22998243 22998342 -204526236 - MER44D DNA MER2_type -2020 467 1 976 134 18 43 chr3 22998357 22998521 -204526057 + AluJb SINE Alu 129 288 -24 2224 112 0 7 chr3 22998542 22998838 -204525740 - AluSx SINE Alu -16 296 3 21 0 0 0 chr3 22999170 22999191 -204525387 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 22999395 22999419 -204525159 + AT_rich Low_complexity Low_complexity 1 24 0 1899 155 7 7 chr3 22999419 22999710 -204524868 - AluSx SINE Alu -21 291 1 1428 165 12 35 chr3 23000120 23000398 -204524180 - AluJb SINE Alu 0 309 38 1843 165 35 0 chr3 23000608 23000893 -204523685 + AluSx SINE Alu 1 295 -17 1792 169 14 3 chr3 23000938 23001233 -204523345 + AluJb SINE Alu 1 298 -14 2287 101 10 0 chr3 23002000 23002298 -204522280 - AluSx SINE Alu -11 301 1 1308 170 9 5 chr3 23002362 23002580 -204521998 + AluJo SINE Alu 77 295 -17 210 37 0 0 chr3 23002685 23002712 -204521866 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 274 347 48 20 chr3 23002828 23002975 -204521603 - MIR SINE MIR -30 232 82 754 174 16 0 chr3 23002980 23003101 -204521477 - FLAM_C SINE Alu -19 124 2 1616 181 0 23 chr3 23003896 23004200 -204520378 - AluJo SINE Alu -15 297 1 605 269 21 27 chr3 23004208 23004394 -204520184 + MER90 LTR ERV1 384 568 -7 336 223 70 56 chr3 23004453 23004668 -204519910 + L1MC4a LINE L1 4489 4706 -1440 729 217 56 7 chr3 23004675 23004818 -204519760 + FRAM SINE Alu 5 154 -12 2037 104 14 0 chr3 23004820 23005133 -204519445 + AluSg SINE Alu 1 317 0 391 333 82 0 chr3 23005141 23005276 -204519302 + L1MC4a LINE L1 4696 4841 -1305 1386 255 63 36 chr3 23005449 23006309 -204518269 + L1MCb LINE L1 597 1478 -4851 858 121 32 0 chr3 23006396 23006520 -204518058 + FLAM_C SINE Alu 2 129 -4 961 164 49 53 chr3 23006616 23006842 -204517736 + AluJo SINE Alu 87 311 -1 343 228 202 0 chr3 23006865 23006979 -204517599 + L1MC4a LINE L1 5209 5345 -801 489 252 17 9 chr3 23006987 23007102 -204517476 + L2 LINE L2 3197 3312 -1 698 301 68 47 chr3 23007140 23007502 -204517076 + L1MC4a LINE L1 5391 5767 -2041 2351 77 3 0 chr3 23007502 23007801 -204516777 - AluY SINE Alu -6 305 6 698 301 68 47 chr3 23007801 23007923 -204516655 + L1MC4a LINE L1 5767 5885 -1923 2329 191 37 23 chr3 23007953 23008605 -204515973 - MER109 Unknown Unknown -1108 1324 1 438 292 68 37 chr3 23008612 23008911 -204515667 - MER109 Unknown Unknown -1629 803 2 956 154 56 70 chr3 23009115 23009280 -204515298 - AluJo SINE Alu -18 294 131 2188 90 20 7 chr3 23009280 23009580 -204514998 + AluSq SINE Alu 1 304 -9 956 154 56 70 chr3 23009580 23009628 -204514950 - AluJo SINE Alu -181 131 84 379 172 0 0 chr3 23009656 23009714 -204514864 + AluJ/FLAM SINE Alu 1 58 -244 1701 152 4 4 chr3 23009715 23009991 -204514587 + AluJb SINE Alu 26 301 -11 1577 163 18 7 chr3 23009993 23010270 -204514308 + AluJo SINE Alu 1 280 -32 33 56 0 0 chr3 23010270 23010324 -204514254 + AT_rich Low_complexity Low_complexity 1 54 0 719 227 146 24 chr3 23010328 23010575 -204514003 + L1MC4 LINE L1 7216 7492 -550 2213 101 10 0 chr3 23010760 23011066 -204513512 + AluSx SINE Alu 1 309 -3 758 137 17 0 chr3 23011121 23011238 -204513340 + AluJo SINE Alu 24 142 -170 1634 144 54 7 chr3 23011249 23011355 -204513223 + AluJb SINE Alu 13 113 -199 186 43 0 0 chr3 23011355 23011378 -204513200 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1634 144 54 7 chr3 23011378 23011549 -204513029 + AluJb SINE Alu 113 303 -9 1356 180 114 0 chr3 23011571 23011843 -204512735 + AluJb SINE Alu 1 303 -9 1608 185 7 0 chr3 23011917 23012214 -204512364 - AluJb SINE Alu -13 299 1 554 280 105 29 chr3 23012930 23013169 -204511409 + MIR SINE MIR 6 262 0 33 43 0 0 chr3 23013199 23013246 -204511332 + AT_rich Low_complexity Low_complexity 1 47 0 309 212 93 85 chr3 23013246 23013364 -204511214 - FLAM_A SINE Alu -14 119 1 2247 87 0 0 chr3 23013593 23013882 -204510696 - AluSc SINE Alu -16 293 5 196 313 54 54 chr3 23014342 23014454 -204510124 - L2 LINE L2 -8 3305 3194 812 142 8 15 chr3 23016866 23017000 -204507578 + FLAM_C SINE Alu 1 133 0 588 184 13 53 chr3 23017263 23017415 -204507163 + L1MC5 LINE L1 7768 7913 -48 1642 165 0 4 chr3 23017845 23018124 -204506454 + AluJb SINE Alu 22 299 -13 474 211 22 60 chr3 23018609 23018733 -204505845 + MIR3 SINE MIR 67 193 -15 379 342 9 0 chr3 23018799 23018913 -204505665 - L2 LINE L2 -8 3305 3191 366 291 79 40 chr3 23019069 23019296 -204505282 - L2 LINE L2 -372 2942 2707 456 91 0 65 chr3 23020439 23020516 -204504062 - AluJ/FRAM SINE Alu -17 295 224 315 291 94 0 chr3 23020630 23020747 -204503831 - MIR SINE MIR 0 262 135 824 93 0 0 chr3 23020757 23020864 -204503714 - U6 snRNA snRNA 0 107 1 207 0 0 0 chr3 23020881 23020904 -204503674 + (A)n Simple_repeat Simple_repeat 1 23 0 377 235 0 0 chr3 23021394 23021462 -204503116 + Tigger3(Golem) DNA MER2_type 13 80 -2949 462 238 48 0 chr3 23021576 23021681 -204502897 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 268 278 144 0 chr3 23021746 23021843 -204502735 + L2 LINE L2 3158 3268 -4 654 226 53 0 chr3 23022586 23022719 -204501859 + FAM SINE Alu 1 140 -45 390 324 139 17 chr3 23023444 23023617 -204500961 - MIR3 SINE MIR -11 197 4 2052 125 0 0 chr3 23024552 23024840 -204499738 - AluSx SINE Alu -21 291 4 1186 202 18 119 chr3 23024896 23025232 -204499346 - AluJo SINE Alu 0 302 1 1020 142 0 45 chr3 23025461 23025637 -204498941 - MER20 DNA MER1_type -7 212 45 231 87 152 22 chr3 23025665 23025711 -204498867 - Charlie1 DNA MER1_type -363 2398 2347 272 188 29 72 chr3 23025712 23025781 -204498797 - Charlie1 DNA MER1_type -2689 72 7 2035 136 7 0 chr3 23026162 23026470 -204498108 - AluSx SINE Alu 0 312 3 188 329 47 0 chr3 23027349 23027434 -204497144 - MIR3 SINE MIR -5 203 115 198 0 0 0 chr3 23029137 23029159 -204495419 + (T)n Simple_repeat Simple_repeat 1 22 0 957 123 0 0 chr3 23029202 23029332 -204495246 + FLAM_C SINE Alu 1 130 -3 258 32 0 0 chr3 23029856 23029887 -204494691 + (TG)n Simple_repeat Simple_repeat 1 31 0 1102 218 182 40 chr3 23030970 23031447 -204493131 - MLT1H LTR MaLR -4 545 1 193 244 0 0 chr3 23031482 23031523 -204493055 + MIR3 SINE MIR 151 191 -17 748 231 114 9 chr3 23031690 23031936 -204492642 - MLT1H1 LTR MaLR 0 590 290 631 130 47 101 chr3 23032556 23032689 -204491889 + LTR65 LTR ERV1 2 126 -543 1965 121 17 7 chr3 23032689 23032986 -204491592 - AluSx SINE Alu -12 300 1 631 130 47 101 chr3 23032986 23033021 -204491557 + LTR65 LTR ERV1 126 161 -508 266 282 0 0 chr3 23033001 23033072 -204491506 + MER90 LTR ERV1 285 355 -259 * 2128 112 7 3 chr3 23033178 23033482 -204491096 - AluSx SINE Alu -7 305 1 528 247 44 25 chr3 23033505 23033663 -204490915 - MIR SINE MIR -82 180 20 666 193 0 0 chr3 23033745 23033864 -204490714 + AluJo SINE Alu 18 136 -176 2150 104 10 13 chr3 23033880 23034013 -204490565 + AluSx SINE Alu 1 133 -179 2438 69 0 0 chr3 23034013 23034317 -204490261 + AluY SINE Alu 1 304 -7 2150 104 10 13 chr3 23034317 23034491 -204490087 + AluSx SINE Alu 133 307 -5 285 290 46 38 chr3 23034915 23035046 -204489532 + MLT1K LTR MaLR 138 269 -319 1712 192 0 0 chr3 23035070 23035382 -204489196 - AluJb SINE Alu 0 312 1 252 194 28 56 chr3 23035551 23035623 -204488955 + MLT1K LTR MaLR 448 517 -71 190 253 147 27 chr3 23035827 23035902 -204488676 - MIR3 SINE MIR -19 189 106 392 212 61 0 chr3 23036282 23036381 -204488197 - Zaphod DNA AcHobo -1 4030 3926 708 149 0 101 chr3 23036381 23036529 -204488049 - FLAM_A SINE Alu 0 142 10 2049 117 91 57 chr3 23036529 23036881 -204487697 + THE1B LTR MaLR 1 364 0 445 176 14 0 chr3 23036881 23036955 -204487623 - FLAM_A SINE Alu -54 78 4 1846 274 68 16 chr3 23036957 23037515 -204487063 - MER115 DNA AcHobo -105 588 2 243 219 62 0 chr3 23037591 23037655 -204486923 + MIR3 SINE MIR 87 154 -54 626 194 77 47 chr3 23039635 23039717 -204484861 + MER3 DNA MER1_type 35 113 -96 2092 117 0 0 chr3 23039717 23040015 -204484563 - AluSx SINE Alu -14 298 1 626 194 77 47 chr3 23040015 23040102 -204484476 + MER3 DNA MER1_type 113 209 0 234 247 93 52 chr3 23041318 23041415 -204483163 + L2 LINE L2 3171 3271 -1 188 135 27 0 chr3 23041427 23041464 -204483114 + GA-rich Low_complexity Low_complexity 2 39 0 183 310 0 35 chr3 23041844 23041902 -204482676 + MIR SINE MIR 129 184 -78 1957 131 0 32 chr3 23042300 23042614 -204481964 - AluJo SINE Alu -8 304 1 261 240 194 16 chr3 23042739 23042868 -204481710 - MIR SINE MIR -18 244 93 194 33 67 0 chr3 23043002 23043032 -204481546 + A-rich Low_complexity Low_complexity 2 33 0 2198 107 0 3 chr3 23044462 23044772 -204479806 - AluSx SINE Alu -3 309 1 549 231 16 86 chr3 23045020 23045206 -204479372 + L1MC5 LINE L1 7753 7925 -36 2031 109 0 20 chr3 23045272 23045565 -204479013 - AluSg SINE Alu -23 287 1 502 239 80 88 chr3 23046175 23046448 -204478130 + MLT1L LTR MaLR 233 610 -5 2229 101 0 0 chr3 23046495 23046792 -204477786 - AluSx SINE Alu -15 297 1 296 289 0 60 chr3 23046985 23047068 -204477510 + MER5B DNA MER1_type 44 121 -57 31 0 0 0 chr3 23047075 23047106 -204477472 + AT_rich Low_complexity Low_complexity 1 31 0 2120 123 0 0 chr3 23047127 23047427 -204477151 - AluSx SINE Alu -12 300 1 198 0 0 0 chr3 23047440 23047462 -204477116 + (TTA)n Simple_repeat Simple_repeat 3 24 0 565 30 0 0 chr3 23047462 23047528 -204477050 - L1PA3 LINE L1 -18 6137 6072 315 146 18 0 chr3 23047528 23047583 -204476995 + MER5B DNA MER1_type 118 173 -5 * 334 306 149 53 chr3 23047565 23047921 -204476657 + L2 LINE L2 2924 3313 0 225 221 91 39 chr3 23049326 23049403 -204475175 + MIR3 SINE MIR 79 159 -49 2178 84 0 3 chr3 23049647 23049978 -204474600 - AluSx SINE Alu 0 330 1 183 308 70 89 chr3 23050293 23050507 -204474071 - L2 LINE L2 -2849 465 256 2418 74 0 0 chr3 23050982 23051293 -204473285 - AluY SINE Alu 0 311 1 2093 109 0 3 chr3 23052541 23052843 -204471735 + AluSg SINE Alu 1 301 -9 555 238 45 21 chr3 23052954 23053112 -204471466 + MIR SINE MIR 36 196 -58 490 268 18 37 chr3 23053231 23053395 -204471183 + MLT1H LTR MaLR 389 549 0 2016 138 3 0 chr3 23053627 23053924 -204470654 - AluSp SINE Alu -15 298 1 1152 137 53 0 chr3 23053925 23054115 -204470463 - MSTB1 LTR MaLR -232 200 1 967 147 32 0 chr3 23054256 23054413 -204470165 + AluJb SINE Alu 131 292 -20 692 191 38 0 chr3 23054439 23054570 -204470008 - MER2 DNA MER2_type -209 136 1 263 237 79 0 chr3 23054588 23054664 -204469914 + L1ME4a LINE L1 5936 6017 -104 1076 150 0 0 chr3 23054819 23054986 -204469592 + AluSp SINE Alu 137 303 -10 673 263 31 13 chr3 23054986 23055227 -204469351 - L2 LINE L2 -311 3002 2759 756 275 45 28 chr3 23055331 23055578 -204469000 - L2 LINE L2 -1886 1428 1178 577 319 10 0 chr3 23055642 23055846 -204468732 + L2 LINE L2 966 1171 -2143 302 167 0 0 chr3 23055847 23055889 -204468689 - Alu SINE Alu -266 42 1 2019 100 45 0 chr3 23055916 23056206 -204468372 - AluSg SINE Alu -7 303 1 1641 137 10 40 chr3 23056470 23056769 -204467809 + AluJo SINE Alu 16 305 -7 1595 192 0 3 chr3 23056891 23057182 -204467396 + AluJo SINE Alu 1 290 -22 2035 109 7 0 chr3 23058276 23058559 -204466019 + AluSx SINE Alu 3 287 -25 2156 101 10 0 chr3 23059337 23059635 -204464943 - AluSx SINE Alu -11 301 1 1224 170 9 5 chr3 23059699 23059917 -204464661 + AluJo SINE Alu 77 295 -17 243 219 62 0 chr3 23061369 23061433 -204463145 - MIR3 SINE MIR -54 154 87 1846 274 68 16 chr3 23061509 23062067 -204462511 + MER115 DNA AcHobo 2 588 -105 445 176 14 0 chr3 23062069 23062143 -204462435 + FLAM_A SINE Alu 4 78 -54 2049 117 91 57 chr3 23062143 23062495 -204462083 - THE1B LTR MaLR 0 364 1 714 150 0 95 chr3 23062495 23062642 -204461936 + FLAM_A SINE Alu 10 142 0 392 212 61 0 chr3 23062642 23062741 -204461837 + Zaphod DNA AcHobo 3926 4030 -1 190 253 147 27 chr3 23063121 23063196 -204461382 + MIR3 SINE MIR 106 189 -19 252 194 28 56 chr3 23063400 23063472 -204461106 - MLT1K LTR MaLR -71 517 448 1907 163 0 0 chr3 23063641 23063948 -204460630 + AluJb SINE Alu 1 307 -5 321 310 44 32 chr3 23063950 23064108 -204460470 - MLT1K LTR MaLR -291 297 138 2307 57 0 0 chr3 23064557 23064838 -204459740 - AluY SINE Alu -30 281 1 24 0 0 0 chr3 23064841 23064865 -204459713 + AT_rich Low_complexity Low_complexity 1 24 0 1607 119 78 44 chr3 23064883 23065178 -204459400 - AluSx SINE Alu -7 305 1 191 200 154 31 chr3 23065946 23066011 -204458567 - MIR3 SINE MIR -25 183 111 355 297 120 37 chr3 23066026 23066458 -204458120 + L2 LINE L2 2745 3252 -61 267 227 31 103 chr3 23066537 23066634 -204457944 + MIR SINE MIR 86 175 -87 2037 119 6 10 chr3 23067593 23067905 -204456673 - AluSx SINE Alu -1 311 1 469 318 7 14 chr3 23068027 23068175 -204456403 + MIR3 SINE MIR 49 195 -13 359 271 16 74 chr3 23068891 23069013 -204455565 + MER5B DNA MER1_type 4 118 -60 219 234 0 91 chr3 23069064 23069141 -204455437 + MER5A DNA MER1_type 118 187 -2 305 156 16 0 chr3 23072027 23072091 -204452487 + MER113 DNA MER1_type? 33 97 -424 1142 178 18 9 chr3 23072118 23072343 -204452235 - AluJb SINE Alu 0 312 86 1695 149 3 20 chr3 23072428 23072729 -204451849 - AluJb SINE Alu -16 296 1 207 114 0 0 chr3 23072997 23073032 -204451546 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 297 239 30 0 chr3 23073623 23073690 -204450888 - MIR3 SINE MIR -50 158 90 1539 186 68 6 chr3 23075223 23075588 -204448990 - Charlie5 DNA MER1_type 0 2624 2237 548 184 9 9 chr3 23075592 23075701 -204448877 - Charlie5 DNA MER1_type -2503 109 1 406 211 147 51 chr3 23077011 23077167 -204447411 + LTR16A1 LTR ERVL 242 412 -45 267 256 12 137 chr3 23077321 23077489 -204447089 - MER117 DNA MER1_type 0 197 51 33137 58 61 9 chr3 23079453 23084706 -204439872 - L1PA5 LINE L1 0 6154 617 596 148 0 0 chr3 23084706 23084794 -204439784 - L1PA5 LINE L1 -6058 88 1 431 237 0 0 chr3 23084849 23084946 -204439632 + MER5B DNA MER1_type 3 99 -79 1369 196 7 21 chr3 23084947 23085228 -204439350 + AluJb SINE Alu 1 277 -35 213 39 0 0 chr3 23085234 23085260 -204439318 + (TAA)n Simple_repeat Simple_repeat 2 27 0 357 241 0 12 chr3 23085265 23085348 -204439230 + MER5B DNA MER1_type 94 175 -3 399 217 118 94 chr3 23085490 23085669 -204438909 - MER5A DNA MER1_type 0 189 6 302 343 28 19 chr3 23085999 23086107 -204438471 - L2 LINE L2 -1 3312 3204 657 205 0 16 chr3 23086108 23086235 -204438343 - MER58B DNA MER1_type 0 341 217 731 292 79 39 chr3 23086294 23086788 -204437790 - L2 LINE L2 -92 3221 2714 333 281 52 0 chr3 23087213 23087309 -204437269 - MIR SINE MIR -70 192 92 1562 137 3 83 chr3 23087858 23088209 -204436369 - MER33 DNA MER1_type -1 323 1 1270 221 117 28 chr3 23089562 23089955 -204434623 - L1ME3A LINE L1 -12 6158 5731 1040 218 4 9 chr3 23089948 23090177 -204434401 + L1ME LINE L1 5441 5668 -502 * 326 275 0 0 chr3 23090470 23090550 -204434028 + L1ME LINE L1 5652 5731 -439 1834 263 87 27 chr3 23090878 23091049 -204433529 - MER20B DNA MER1_type -8 775 616 2298 98 0 0 chr3 23091049 23091346 -204433232 + AluSc SINE Alu 1 297 -12 1834 263 87 27 chr3 23091346 23091656 -204432922 - MER20B DNA MER1_type -167 616 326 2394 57 0 3 chr3 23091656 23091952 -204432626 + AluY SINE Alu 1 295 -16 1834 263 87 27 chr3 23091952 23092168 -204432410 - MER20B DNA MER1_type -457 326 35 1779 117 4 0 chr3 23093073 23093322 -204431256 + AluSx SINE Alu 1 250 -62 200 344 41 16 chr3 23093378 23093500 -204431078 - L2 LINE L2 -475 2839 2715 189 130 111 37 chr3 23093757 23093811 -204430767 - L2 LINE L2 -18 3295 3238 548 302 88 60 chr3 23093861 23094146 -204430432 + L2 LINE L2 2978 3270 -2 940 207 70 44 chr3 23094154 23094381 -204430197 - MIR SINE MIR -28 234 2 2324 215 61 20 chr3 23094443 23094987 -204429591 - MER90 LTR ERV1 -2 573 8 318 333 0 0 chr3 23096202 23096304 -204428274 + MIR3 SINE MIR 76 177 -31 2208 111 0 0 chr3 23096308 23096615 -204427963 - AluSx SINE Alu -5 307 1 240 111 0 0 chr3 23097741 23097777 -204426801 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 204 37 0 chr3 23098666 23098882 -204425696 - MER58A DNA MER1_type 0 224 1 632 274 98 5 chr3 23099030 23099234 -204425344 + MIR SINE MIR 20 242 -20 262 233 44 56 chr3 23099365 23099455 -204425123 - L2 LINE L2 -212 3060 2972 249 227 30 30 chr3 23099794 23099860 -204424718 + MIR3 SINE MIR 124 189 -19 231 158 61 0 chr3 23099944 23100026 -204424552 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 621 268 60 6 chr3 23100096 23100279 -204424299 + MIR3 SINE MIR 16 208 0 2085 174 104 9 chr3 23100854 23101278 -204423300 + MER31B LTR ERV1 1 464 -2 2244 102 0 3 chr3 23101385 23101688 -204422890 - AluSq SINE Alu -11 302 1 1680 170 7 0 chr3 23101697 23101985 -204422593 - AluSx SINE Alu -22 290 1 253 135 0 0 chr3 23102006 23102043 -204422535 + MER117 DNA MER1_type 54 90 -107 406 282 165 20 chr3 23102164 23102326 -204422252 - MIR SINE MIR -48 214 30 513 296 77 0 chr3 23102686 23102855 -204421723 + MLT1J2 LTR MaLR 262 443 -7 550 245 82 31 chr3 23102901 23103060 -204421518 - MIR SINE MIR -65 197 31 362 280 36 52 chr3 23103391 23103508 -204421070 + L1MC4 LINE L1 7853 7967 -75 1958 155 9 79 chr3 23103508 23103848 -204420730 - MLT1B LTR MaLR 0 390 83 2114 111 0 16 chr3 23103848 23104164 -204420414 + AluSx SINE Alu 1 311 -1 1958 155 9 79 chr3 23104164 23104242 -204420336 - MLT1B LTR MaLR -307 83 1 362 280 36 52 chr3 23104242 23104317 -204420261 + L1MC4 LINE L1 7967 8042 0 197 300 30 50 chr3 23105383 23105483 -204419095 + MIR3 SINE MIR 105 202 -6 371 246 40 137 chr3 23105679 23105884 -204418694 - L1MC4a LINE L1 -1753 6055 5876 1550 188 55 0 chr3 23105884 23106177 -204418401 - 7SLRNA srpRNA srpRNA -11 309 1 371 246 40 137 chr3 23106177 23106219 -204418359 - L1MC4a LINE L1 -1932 5876 5832 839 168 0 0 chr3 23106230 23106367 -204418211 - FLAM_C SINE Alu -1 142 6 1502 269 32 13 chr3 23106375 23106750 -204417828 - L1MC4a LINE L1 -1988 5820 5433 1741 152 4 4 chr3 23106750 23107026 -204417552 - AluJb SINE Alu -36 276 1 1502 269 32 13 chr3 23107026 23107111 -204417467 - L1MC4a LINE L1 -2375 5433 5351 318 254 190 14 chr3 23107115 23107257 -204417321 - L1MC4a LINE L1 -824 5322 5156 342 0 0 0 chr3 23107263 23107300 -204417278 + tRNA-Gly-GGG tRNA tRNA 1 37 -37 311 290 30 10 chr3 23107369 23107469 -204417109 - L1MC4a LINE L1 -1069 5077 4976 188 260 271 10 chr3 23107631 23107727 -204416851 - MIR3 SINE MIR -73 135 15 495 223 23 39 chr3 23107916 23108046 -204416532 - L1MC/D LINE L1 -2239 5569 5442 43 47 0 0 chr3 23108066 23108130 -204416448 + AT_rich Low_complexity Low_complexity 1 64 0 890 143 0 0 chr3 23108140 23108273 -204416305 + FLAM_C SINE Alu 1 133 -10 285 283 202 25 chr3 23108878 23109076 -204415502 - MIR SINE MIR -9 253 21 2400 44 0 14 chr3 23109162 23109459 -204415119 + AluY SINE Alu 1 293 -18 534 276 55 0 chr3 23109548 23109693 -204414885 - MIR SINE MIR -6 256 104 1559 150 15 11 chr3 23109698 23109971 -204414607 + AluJb SINE Alu 1 274 -38 522 188 0 19 chr3 23109973 23110127 -204414451 + G-rich Low_complexity Low_complexity 3 153 0 256 33 0 0 chr3 23110127 23110157 -204414421 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 387 282 43 17 chr3 23110362 23110479 -204414099 - MIR3 SINE MIR -4 204 85 784 289 47 16 chr3 23111975 23112228 -204412350 - MIR SINE MIR 0 262 2 340 273 152 15 chr3 23112285 23112417 -204412161 + MIR SINE MIR 99 248 -14 1075 179 50 10 chr3 23112784 23112985 -204411593 + LTR16C LTR ERVL 283 491 0 2075 183 87 28 chr3 23113072 23113531 -204411047 + MLT1D LTR MaLR 18 503 -2 497 264 196 0 chr3 23113555 23113703 -204410875 + MER5A DNA MER1_type 1 177 -12 182 215 38 139 chr3 23113584 23113703 -204410875 - L3 LINE CR1 -614 963 862 * 489 257 46 29 chr3 23113703 23113878 -204410700 - MER5B DNA MER1_type 0 178 1 182 215 38 139 chr3 23113878 23113916 -204410662 - L3 LINE CR1 -715 862 822 21 0 0 0 chr3 23114164 23114185 -204410393 + AT_rich Low_complexity Low_complexity 1 21 0 370 141 202 50 chr3 23114417 23114516 -204410062 + L2 LINE L2 3200 3313 0 * 387 351 27 0 chr3 23114500 23114648 -204409930 - MIR SINE MIR -64 198 47 2163 107 7 0 chr3 23114799 23115107 -204409471 + AluSg SINE Alu 1 310 0 1672 123 105 4 chr3 23116138 23116415 -204408163 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr3 23116433 23116457 -204408121 + AT_rich Low_complexity Low_complexity 1 24 0 2318 57 0 0 chr3 23116460 23116801 -204407777 + AluY SINE Alu 1 341 0 652 111 0 10 chr3 23116961 23117060 -204407518 + AluSg/x SINE Alu 203 300 -9 555 238 45 21 chr3 23117171 23117329 -204407249 + MIR SINE MIR 36 196 -58 490 268 18 37 chr3 23117448 23117612 -204406966 + MLT1H LTR MaLR 389 549 0 2173 97 3 3 chr3 23117844 23118142 -204406436 - AluSp SINE Alu -15 298 1 244 330 42 34 chr3 23118673 23118791 -204405787 + L2 LINE L2 3153 3271 -1 645 266 55 18 chr3 23119154 23119593 -204404985 + LTR33 LTR ERVL 19 521 0 571 188 43 0 chr3 23119778 23119895 -204404683 - L2 LINE L2 0 3313 3192 232 246 18 0 chr3 23119967 23120024 -204404554 + Charlie4 DNA MER1_type 1900 1957 -4 420 104 0 0 chr3 23121606 23121673 -204402905 + (TG)n Simple_repeat Simple_repeat 2 68 0 245 172 35 0 chr3 23121676 23121734 -204402844 + CT-rich Low_complexity Low_complexity 1 60 0 412 251 182 37 chr3 23122604 23122791 -204401787 + MIR SINE MIR 31 244 -18 1050 227 126 66 chr3 23122810 23123326 -204401252 + MLT1H LTR MaLR 3 549 0 423 285 231 8 chr3 23124468 23124724 -204399854 + L1MC4a LINE L1 5522 5834 -1974 * 1445 209 22 43 chr3 23124704 23125150 -204399428 + L1ME1 LINE L1 4889 5325 -821 1857 146 0 10 chr3 23125161 23125462 -204399116 + AluSx SINE Alu 13 310 -2 850 173 23 100 chr3 23125468 23125688 -204398890 + AluJb SINE Alu 86 288 -24 240 111 0 0 chr3 23125689 23125725 -204398853 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 4184 181 55 0 chr3 23125725 23126521 -204398057 + L1ME1 LINE L1 5322 6161 -5 477 207 89 15 chr3 23127444 23127579 -204396999 - MER103 DNA DNA -20 146 2 269 217 0 117 chr3 23127676 23127796 -204396782 - MIR SINE MIR -51 211 106 30 27 0 0 chr3 23128398 23128435 -204396143 + AT_rich Low_complexity Low_complexity 1 37 0 1696 156 7 13 chr3 23129367 23129689 -204394889 - AluSx SINE Alu 0 312 1 1147 256 158 10 chr3 23129693 23130359 -204394219 - L2 LINE L2 0 3313 2524 334 266 39 23 chr3 23130361 23130489 -204394089 + MLT1G1 LTR MaLR 1 130 -465 298 270 226 7 chr3 23131003 23131140 -204393438 - MIR SINE MIR -89 173 7 201 287 133 40 chr3 23131494 23131644 -204392934 + L2 LINE L2 2949 3112 -160 210 172 62 78 chr3 23131678 23131742 -204392836 + MIR SINE MIR 20 82 -180 1951 147 0 0 chr3 23132402 23132702 -204391876 + AluSx SINE Alu 5 304 -8 2075 154 31 8 chr3 23132835 23133191 -204391387 - MLT1A1 LTR MaLR 0 365 2 211 263 153 29 chr3 23133196 23133333 -204391245 + L2 LINE L2 3160 3313 0 2105 103 38 0 chr3 23133405 23133697 -204390881 + AluSx SINE Alu 1 303 -9 1972 173 5 67 chr3 23134133 23134437 -204390141 - MLT1B LTR MaLR 0 390 117 2295 85 0 10 chr3 23134437 23134743 -204389835 - AluSg SINE Alu -7 303 1 1972 173 5 67 chr3 23134743 23134854 -204389724 - MLT1B LTR MaLR -273 117 1 417 288 159 12 chr3 23134883 23135046 -204389532 + MIR SINE MIR 21 207 -55 583 184 12 9 chr3 23135882 23136120 -204388458 - MLT1F1 LTR MaLR -170 397 2 597 245 117 12 chr3 23136489 23136652 -204387926 - MER5A DNA MER1_type -9 180 1 1764 164 11 0 chr3 23137517 23137798 -204386780 + AluSx SINE Alu 1 284 -28 781 123 8 16 chr3 23137824 23137946 -204386632 + L1MC1 LINE L1 6212 6332 -1 480 244 10 57 chr3 23139345 23139511 -204385067 + MLT1F LTR MaLR 1 169 -240 962 200 6 0 chr3 23139587 23139767 -204384811 - LTR65 LTR ERV1 0 669 489 1946 145 0 0 chr3 23139938 23140242 -204384336 + AluJb SINE Alu 8 311 -1 268 114 57 136 chr3 23140435 23140523 -204384055 - L1MB7 LINE L1 -2 6176 6096 1726 179 132 26 chr3 23140536 23140900 -204383678 - LTR65 LTR ERV1 -205 464 49 2436 134 58 17 chr3 23140900 23141311 -204383267 - MSTA LTR MaLR 0 428 1 1726 179 132 26 chr3 23141311 23141364 -204383214 - LTR65 LTR ERV1 -620 49 3 294 286 142 7 chr3 23141427 23141600 -204382978 + MLT1H LTR MaLR 338 530 -19 830 172 30 30 chr3 23141758 23141927 -204382651 + L1ME3 LINE L1 5949 6117 -45 1190 126 6 0 chr3 23142292 23142466 -204382112 - MER5B DNA MER1_type 0 178 4 189 333 15 0 chr3 23142475 23142541 -204382037 - MIR3 SINE MIR -54 154 88 307 272 140 15 chr3 23142995 23143131 -204381447 - MIR SINE MIR -33 229 77 878 298 140 20 chr3 23143322 23143728 -204380850 + LTR16B LTR ERVL 8 462 -2 22609 122 50 25 chr3 23143836 23144527 -204380051 - L1MA3 LINE L1 0 7724 7052 1721 162 6 22 chr3 23144527 23144842 -204379736 - AluJb SINE Alu -2 310 1 22609 122 50 25 chr3 23144842 23145681 -204378897 - L1MA3 LINE L1 -672 7052 6236 2160 114 0 10 chr3 23145681 23145989 -204378589 - AluSx SINE Alu -7 305 1 22609 122 50 25 chr3 23145989 23147282 -204377296 - L1MA3 LINE L1 -1488 6236 4977 1237 177 117 8 chr3 23147282 23147547 -204377031 - AluJb SINE Alu -18 294 1 22609 122 50 25 chr3 23147547 23148185 -204376393 - L1MA3 LINE L1 -2747 4977 4357 2074 103 0 3 chr3 23148185 23148476 -204376102 - AluY SINE Alu -21 290 1 22609 122 50 25 chr3 23148476 23148964 -204375614 - L1MA3 LINE L1 -3367 4357 3883 2854 51 17 3 chr3 23148964 23149314 -204375264 + THE1A LTR MaLR 1 355 0 11826 90 10 5 chr3 23149314 23150886 -204373692 + THE1A-int LTR MaLR 1 1580 0 2584 91 14 3 chr3 23150886 23151237 -204373341 + THE1A LTR MaLR 1 355 0 22609 122 50 25 chr3 23151237 23153152 -204371426 - L1MA3 LINE L1 -3840 3884 16 353 244 33 0 chr3 23153563 23153653 -204370925 + L1 LINE L1 4376 4468 -1678 407 219 12 0 chr3 23153659 23153741 -204370837 + MER74A LTR ERVL 42 124 -434 1000 213 29 53 chr3 23153777 23154166 -204370412 + MER74A LTR ERVL 131 558 0 2240 98 7 0 chr3 23154237 23154534 -204370044 + AluSq SINE Alu 2 300 -13 195 285 32 51 chr3 23155058 23155214 -204369364 - L2 LINE L2 -221 3051 2900 2557 52 20 0 chr3 23155853 23156158 -204368420 - AluY SINE Alu 0 311 1 269 291 58 0 chr3 23156733 23156819 -204367759 - MIR SINE MIR -12 250 160 1530 175 4 4 chr3 23156872 23157124 -204367454 + AluJo SINE Alu 35 286 -26 32 67 0 0 chr3 23158063 23158123 -204366455 + AT_rich Low_complexity Low_complexity 1 60 0 26 50 0 0 chr3 23158276 23158316 -204366262 + AT_rich Low_complexity Low_complexity 1 40 0 1762 181 3 16 chr3 23158466 23158770 -204365808 + AluJb SINE Alu 1 300 -12 226 235 0 37 chr3 23159284 23159365 -204365213 - L1MC5 LINE L1 -44 7917 7840 2504 78 0 0 chr3 23159484 23159793 -204364785 - AluY SINE Alu -2 309 1 1869 141 0 27 chr3 23159803 23160102 -204364476 - AluJb SINE Alu -21 291 1 1827 148 7 7 chr3 23160129 23160406 -204364172 + AluSx SINE Alu 1 277 -35 835 234 24 5 chr3 23160597 23160802 -204363776 + MER3 DNA MER1_type 1 209 0 2032 119 3 10 chr3 23160851 23161144 -204363434 + AluSc SINE Alu 1 291 -18 2209 116 0 0 chr3 23161691 23161983 -204362595 + AluSq SINE Alu 1 292 -21 309 316 116 7 chr3 23162914 23163069 -204361509 - L1MC/D LINE L1 -2176 5632 5461 1609 161 76 20 chr3 23163747 23164089 -204360489 - MER46B DNA MER2_type 0 236 1 2275 88 0 10 chr3 23165282 23165577 -204359001 - AluSg SINE Alu -18 292 1 2297 115 3 10 chr3 23165928 23166242 -204358336 + AluSx SINE Alu 1 312 0 694 230 75 5 chr3 23166250 23166437 -204358141 + MIR SINE MIR 3 202 -60 275 254 35 9 chr3 23166735 23166849 -204357729 + L1MC4 LINE L1 7926 8042 0 492 234 98 33 chr3 23167527 23167711 -204356867 - L1ME LINE L1 -414 5707 5512 377 236 154 16 chr3 23167862 23167985 -204356593 + MIR SINE MIR 75 214 -48 375 330 88 71 chr3 23168000 23168352 -204356226 - L2 LINE L2 0 3272 2915 2383 90 0 0 chr3 23168682 23168983 -204355595 + AluSq SINE Alu 1 301 -12 1359 193 0 36 chr3 23169484 23169758 -204354820 + AluJo SINE Alu 39 302 -10 637 231 60 41 chr3 23170106 23170374 -204354204 - L1ME LINE L1 -4706 1374 1102 331 233 47 41 chr3 23170424 23170551 -204354027 - L1ME LINE L1 -5208 875 751 22 0 0 0 chr3 23170713 23170735 -204353843 + AT_rich Low_complexity Low_complexity 1 22 0 596 281 96 36 chr3 23170875 23170989 -204353589 + L1ME4a LINE L1 5735 5841 -280 2128 125 0 10 chr3 23170989 23171294 -204353284 - AluSc SINE Alu -7 302 1 596 281 96 36 chr3 23171294 23171329 -204353249 + L1ME4a LINE L1 5841 5872 -249 1652 181 7 7 chr3 23171329 23171628 -204352950 + AluJb SINE Alu 1 299 -13 596 281 96 36 chr3 23171628 23171840 -204352738 + L1ME4a LINE L1 5872 6119 -2 21 95 0 0 chr3 23171875 23171938 -204352640 + AT_rich Low_complexity Low_complexity 1 63 0 1598 184 7 17 chr3 23172796 23173084 -204351494 - AluJb SINE Alu -25 287 3 829 212 5 52 chr3 23173390 23173583 -204350995 + MER5A DNA MER1_type 2 185 -4 419 188 0 10 chr3 23174877 23174978 -204349600 + L1MEc LINE L1 715 814 -5582 2106 121 0 38 chr3 23174979 23175294 -204349284 - AluSx SINE Alu -9 303 1 11378 65 5 1 chr3 23175320 23177646 -204346932 - L1PA6 LINE L1 0 6154 3893 4200 70 51 14 chr3 23177646 23178292 -204346286 + L1PA6 LINE L1 3229 3898 -2248 3359 110 18 75 chr3 23178309 23178937 -204345641 - L1PB2 LINE L1 -3 6148 5557 225 65 0 0 chr3 23182153 23182184 -204342394 + (CAG)n Simple_repeat Simple_repeat 2 32 0 263 152 106 15 chr3 23182233 23182299 -204342279 - MER103 DNA DNA -33 133 62 207 0 0 0 chr3 23182438 23182461 -204342117 + (TC)n Simple_repeat Simple_repeat 2 24 0 2145 149 50 36 chr3 23182512 23182989 -204341589 - L1MB2 LINE L1 -6 6165 5682 1646 174 26 19 chr3 23183309 23183619 -204340959 - AluJb SINE Alu 0 312 1 1570 199 51 3 chr3 23183622 23183796 -204340782 - AluJb SINE Alu -2 310 115 192 77 0 0 chr3 23183796 23183822 -204340756 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1570 199 51 3 chr3 23183822 23183943 -204340635 - AluJb SINE Alu -197 115 1 2518 54 0 7 chr3 23184367 23184664 -204339914 + AluSc SINE Alu 1 295 -14 1811 157 3 20 chr3 23184920 23185225 -204339353 + AluJo SINE Alu 1 300 -12 539 259 23 8 chr3 23187367 23187498 -204337080 + FLAM_A SINE Alu 1 133 0 2220 101 0 7 chr3 23188547 23188843 -204335735 + AluSg1 SINE Alu 1 294 -15 380 289 71 32 chr3 23189008 23189261 -204335317 - MLT1L LTR MaLR -332 283 21 216 0 0 0 chr3 23190802 23190826 -204333752 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 771 117 0 0 chr3 23190838 23190941 -204333637 - FLAM_C SINE Alu -33 110 8 779 144 40 0 chr3 23191061 23191186 -204333392 - FLAM_C SINE Alu -3 130 1 536 161 190 33 chr3 23193488 23193699 -204330879 - Charlie1 DNA MER1_type -94 2667 2424 1068 170 47 28 chr3 23193847 23194059 -204330519 - MER20 DNA MER1_type -2 217 2 1242 136 47 21 chr3 23194506 23194741 -204329837 - MER2 DNA MER2_type -96 249 9 226 269 25 42 chr3 23194747 23194827 -204329751 + L1ME3A LINE L1 5606 5685 -2123 1829 173 0 26 chr3 23194827 23195134 -204329444 + AluJb SINE Alu 5 303 -9 226 269 25 42 chr3 23195134 23195172 -204329406 + L1ME3A LINE L1 5685 5722 -2086 2119 104 3 11 chr3 23195283 23195570 -204329008 + AluSx SINE Alu 1 285 -27 1613 168 81 12 chr3 23195691 23196013 -204328565 + MER2 DNA MER2_type 1 344 0 1711 174 22 4 chr3 23196520 23196796 -204327782 + AluJo SINE Alu 1 281 -31 732 278 128 26 chr3 23197786 23198020 -204326558 + MIR SINE MIR 5 262 0 201 200 40 20 chr3 23199738 23199788 -204324790 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 2851 267 146 42 chr3 23200208 23200492 -204324086 + L2 LINE L2 1525 1778 -1535 180 0 0 0 chr3 23200492 23200512 -204324066 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2141 108 0 3 chr3 23200514 23200802 -204323776 - AluSx SINE Alu -25 287 1 2851 267 146 42 chr3 23200802 23201590 -204322988 + L2 LINE L2 1778 2483 -830 1674 173 14 11 chr3 23201590 23201868 -204322710 - AluJo SINE Alu -1 311 33 2851 267 146 42 chr3 23201868 23202424 -204322154 + L2 LINE L2 2483 3311 -2 385 367 102 43 chr3 23202398 23202703 -204321875 - L2 LINE L2 -10 3262 2940 * 2206 115 0 0 chr3 23202717 23203005 -204321573 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr3 23203224 23203246 -204321332 + AT_rich Low_complexity Low_complexity 1 22 0 1818 153 17 3 chr3 23203351 23203646 -204320932 + AluJo SINE Alu 1 299 -13 929 202 37 125 chr3 23203694 23203909 -204320669 + L1ME3A LINE L1 5728 5891 -273 2115 134 7 3 chr3 23203909 23204215 -204320363 + AluSx SINE Alu 1 307 -5 929 202 37 125 chr3 23204215 23204407 -204320171 + L1ME3A LINE L1 5891 6098 -66 210 175 0 0 chr3 23204715 23204755 -204319823 - L2 LINE L2 -2 3311 3272 22 0 0 0 chr3 23204820 23204842 -204319736 + AT_rich Low_complexity Low_complexity 1 22 0 199 137 118 0 chr3 23204975 23205026 -204319552 + MIR SINE MIR 81 137 -71 835 210 116 17 chr3 23207523 23207756 -204316822 - L3 LINE CR1 -11 1566 1311 228 159 32 63 chr3 23207899 23207962 -204316616 + MARNA DNA Mariner 10 70 -516 822 242 42 12 chr3 23209245 23209485 -204315093 - MIR SINE MIR 0 262 16 398 174 0 0 chr3 23209629 23209698 -204314880 - L2 LINE L2 -11 3302 3234 1171 157 32 14 chr3 23210769 23210985 -204313593 - L1PA15 LINE L1 -7 6158 5939 1220 255 50 12 chr3 23211133 23211474 -204313104 + L1MC1 LINE L1 3 356 -6186 827 219 26 10 chr3 23211475 23211667 -204312911 + L1MC1 LINE L1 2951 3145 -3499 1764 89 0 0 chr3 23211667 23211880 -204312698 + AluSq SINE Alu 79 291 -22 4927 194 139 78 chr3 23211883 23212497 -204312081 + L1MC1 LINE L1 3541 4116 -2715 2234 93 14 0 chr3 23212497 23212787 -204311791 + AluSp SINE Alu 1 294 -19 4927 194 139 78 chr3 23212787 23212940 -204311638 + L1MC1 LINE L1 4116 4258 -2573 1098 165 0 6 chr3 23212940 23213110 -204311468 + AluJb SINE Alu 85 253 -59 4927 194 139 78 chr3 23213110 23214492 -204310086 + L1MC1 LINE L1 4258 6025 -806 2447 97 0 0 chr3 23214492 23214802 -204309776 - AluSx SINE Alu -2 310 1 4927 194 139 78 chr3 23214802 23214932 -204309646 + L1MC1 LINE L1 6025 6146 -685 773 161 22 0 chr3 23214932 23215069 -204309509 + L1MC1 LINE L1 6421 6560 -271 756 248 80 13 chr3 23215530 23215756 -204308822 + MIR SINE MIR 22 262 0 369 276 21 48 chr3 23215818 23216044 -204308534 + MIR SINE MIR 56 242 -20 872 293 50 38 chr3 23216172 23216616 -204307962 - LTR16B LTR ERVL -2 462 14 281 253 123 39 chr3 23216862 23217016 -204307562 + MIR SINE MIR 81 247 -15 2375 97 0 3 chr3 23217588 23217899 -204306679 - AluSx SINE Alu -2 310 1 603 262 35 23 chr3 23218250 23218422 -204306156 + MIR SINE MIR 40 213 -49 946 283 77 18 chr3 23218458 23218797 -204305781 + MLT1H1 LTR MaLR 1 359 -196 317 140 88 0 chr3 23218849 23218906 -204305672 + MLT1H1 LTR MaLR 450 511 -19 1272 217 131 50 chr3 23219158 23219661 -204304917 - LTR10B LTR ERV1 -3 544 1 2385 107 0 0 chr3 23219681 23219991 -204304587 + AluSx SINE Alu 1 310 -2 324 307 79 0 chr3 23220093 23220220 -204304358 - MIR3 SINE MIR -42 166 30 2259 102 7 0 chr3 23220749 23221043 -204303535 + AluSp SINE Alu 1 296 -17 842 135 163 0 chr3 23221043 23221184 -204303394 + AluSq SINE Alu 134 297 -16 739 112 112 26 chr3 23221761 23221877 -204302701 + AluSp SINE Alu 2 127 -186 246 293 81 0 chr3 23222369 23222468 -204302110 + MIR SINE MIR 81 187 -75 942 189 22 0 chr3 23222504 23222689 -204301889 - MER5A DNA MER1_type 0 189 1 1769 227 93 47 chr3 23223089 23223445 -204301133 - MLT1F LTR MaLR 0 542 153 2255 100 3 0 chr3 23223445 23223735 -204300843 - AluSg SINE Alu -19 291 1 1769 227 93 47 chr3 23223735 23223894 -204300684 - MLT1F LTR MaLR -389 153 3 822 283 70 19 chr3 23224021 23224434 -204300144 + LTR33 LTR ERVL 39 472 -49 1052 307 49 43 chr3 23224525 23224714 -204299864 + MLT1K LTR MaLR 2 188 -400 2337 92 3 0 chr3 23224714 23225009 -204299569 + AluY SINE Alu 1 296 -15 1052 307 49 43 chr3 23225009 23225350 -204299228 + MLT1K LTR MaLR 188 535 -53 202 267 0 0 chr3 23225350 23225395 -204299183 + GA-rich Low_complexity Low_complexity 3 47 0 189 0 0 0 chr3 23225601 23225622 -204298956 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 201 140 60 20 chr3 23225783 23225833 -204298745 + MIR SINE MIR 92 143 -119 1948 237 39 34 chr3 23226316 23226651 -204297927 + MLT1F LTR MaLR 2 343 -199 2055 176 31 64 chr3 23226651 23227134 -204297444 - MLT1C LTR MaLR 0 467 1 1948 237 39 34 chr3 23227134 23227334 -204297244 + MLT1F LTR MaLR 343 540 -2 2277 53 0 0 chr3 23231504 23231823 -204292755 + AluY SINE Alu 21 339 0 835 188 0 0 chr3 23231835 23232008 -204292570 - FLAM_A SINE Alu 0 173 1 736 248 57 68 chr3 23232042 23232261 -204292317 + L1MC/D LINE L1 5258 5473 -2335 2046 149 0 0 chr3 23232261 23232563 -204292015 - AluJb SINE Alu -8 304 3 736 248 57 68 chr3 23232563 23232726 -204291852 + L1MC/D LINE L1 5473 5636 -2172 1205 127 6 0 chr3 23232729 23232902 -204291676 - AluSp SINE Alu -3 310 137 2027 74 0 31 chr3 23233139 23233397 -204291181 + AluY SINE Alu 50 299 -12 611 253 17 28 chr3 23234361 23234539 -204290039 - MER5B DNA MER1_type -2 176 1 839 208 147 116 chr3 23234940 23235161 -204289417 - L1ME4a LINE L1 0 6121 5908 2183 124 3 0 chr3 23235161 23235467 -204289111 + AluSq SINE Alu 1 307 -6 839 208 147 116 chr3 23235467 23235732 -204288846 - L1ME4a LINE L1 -213 5908 5612 2144 116 20 0 chr3 23235732 23236024 -204288554 - AluSx SINE Alu -14 298 1 839 208 147 116 chr3 23236024 23236113 -204288465 - L1ME4a LINE L1 -509 5612 5527 1003 176 54 17 chr3 23236143 23236529 -204288049 + LTR37B LTR ERV1 4 468 0 2142 151 33 3 chr3 23236866 23237203 -204287375 + MER7A DNA MER2_type 2 346 0 923 295 194 31 chr3 23237981 23238930 -204285648 + L3 LINE CR1 370 1473 -104 429 246 47 35 chr3 23239670 23239841 -204284737 + MER5B DNA MER1_type 1 173 -5 212 206 234 19 chr3 23239881 23239988 -204284590 + MER5A DNA MER1_type 40 169 -20 * 454 146 101 0 chr3 23239913 23240002 -204284576 - MER5A DNA MER1_type -83 106 9 1305 215 35 24 chr3 23242567 23242907 -204281671 - MER2 DNA MER2_type 0 344 1 566 278 188 18 chr3 23243502 23243891 -204280687 - L2 LINE L2 -31 3282 2828 425 306 35 12 chr3 23243908 23244081 -204280497 + L2 LINE L2 2615 2791 -523 184 346 0 0 chr3 23246010 23246062 -204278516 - MIR SINE MIR -127 81 30 1473 96 0 10 chr3 23246128 23246326 -204278252 + AluSg/x SINE Alu 99 294 -16 841 208 27 11 chr3 23246420 23246603 -204277975 - MER5A DNA MER1_type 0 189 4 458 215 108 8 chr3 23246952 23247082 -204277496 + L1MEd LINE L1 16 158 -5961 2201 102 3 3 chr3 23247832 23248141 -204276437 + AluSq SINE Alu 1 309 0 1353 176 12 33 chr3 23248326 23248570 -204276008 + AluJb SINE Alu 1 239 -73 1841 157 33 13 chr3 23249043 23249349 -204275229 - AluJo SINE Alu 0 312 1 6483 136 75 45 chr3 23249986 23249999 -204274579 + L1MC1 LINE L1 318 329 -6097 2254 78 4 0 chr3 23249999 23250328 -204274250 + AluY SINE Alu 1 330 0 6483 136 75 45 chr3 23250328 23250830 -204273748 + L1MC1 LINE L1 329 814 -5612 1760 135 31 35 chr3 23250830 23251119 -204273459 + AluSx SINE Alu 1 288 -24 6483 136 75 45 chr3 23251119 23251873 -204272705 + L1MC1 LINE L1 814 1633 -4793 2043 128 147 11 chr3 23251873 23252248 -204272330 - MSTA LTR MaLR 0 428 3 6483 136 75 45 chr3 23252248 23252305 -204272273 + L1MC1 LINE L1 1633 1687 -4739 2433 231 24 23 chr3 23252316 23252613 -204271965 + L1MC1 LINE L1 2287 2582 -3844 2425 122 34 6 chr3 23252613 23252967 -204271611 + THE1B LTR MaLR 1 364 0 2433 231 24 23 chr3 23252967 23253956 -204270622 + L1MC1 LINE L1 2582 3677 -2749 2517 80 0 0 chr3 23253956 23254257 -204270321 + AluSq SINE Alu 3 303 -10 2433 231 24 23 chr3 23254257 23254561 -204270017 + L1MC1 LINE L1 3677 3979 -2447 2062 224 37 26 chr3 23254561 23255050 -204269528 + MLT2B2 LTR ERVL 1 494 -21 5560 107 102 28 chr3 23255050 23256135 -204268443 + MER11A LTR ERVK 1 1266 0 841 223 0 38 chr3 23256161 23256216 -204268362 + L1MC1 LINE L1 3974 4030 -2396 497 73 118 0 chr3 23256216 23256284 -204268294 + MADE1 DNA Mariner 1 76 -4 841 223 0 38 chr3 23256284 23256412 -204268166 + L1MC1 LINE L1 4030 4150 -2276 696 198 8 0 chr3 23256412 23256533 -204268045 + AluJb SINE Alu 179 300 -12 2950 214 62 67 chr3 23256533 23257029 -204267549 + L1MC1 LINE L1 4168 4665 -1761 2391 77 20 0 chr3 23257029 23257326 -204267252 + AluY SINE Alu 1 303 -8 2950 214 62 67 chr3 23257326 23257592 -204266986 + L1MC1 LINE L1 4665 4928 -1498 1566 181 3 36 chr3 23257592 23257901 -204266677 + AluJo SINE Alu 6 304 -8 2950 214 62 67 chr3 23257901 23258113 -204266465 + L1MC1 LINE L1 4928 5139 -1287 645 173 0 153 chr3 23258114 23258264 -204266314 - FLAM_A SINE Alu -10 132 6 4178 153 34 69 chr3 23258271 23258721 -204265857 + L1MC1 LINE L1 5123 5587 -1026 2199 95 20 10 chr3 23258721 23259025 -204265553 + AluSc SINE Alu 1 307 -2 4178 153 34 69 chr3 23259025 23259225 -204265353 + L1MC1 LINE L1 5587 5792 -821 2198 101 0 7 chr3 23259225 23259521 -204265057 - AluSp SINE Alu -19 294 1 4178 153 34 69 chr3 23259521 23260058 -204264520 + L1MC1 LINE L1 5792 6286 -327 1192 202 9 0 chr3 23260058 23260265 -204264313 + L1MC1 LINE L1 6119 6333 0 1012 310 88 47 chr3 23260265 23260957 -204263621 + L1ME3A LINE L1 169 896 -5223 1971 158 3 0 chr3 23260957 23261261 -204263317 + AluJb SINE Alu 1 305 -7 1012 310 88 47 chr3 23261261 23261279 -204263299 + L1ME3A LINE L1 896 912 -5207 242 256 83 23 chr3 23261317 23261439 -204263139 + L1ME3A LINE L1 1021 1153 -4966 1777 173 36 7 chr3 23261439 23261740 -204262838 + AluJo SINE Alu 1 310 -2 460 279 198 19 chr3 23261781 23262089 -204262489 + L1ME3A LINE L1 1153 1515 -4614 187 175 25 38 chr3 23262285 23262365 -204262213 + GA-rich Low_complexity Low_complexity 3 81 0 1554 229 219 16 chr3 23262634 23263140 -204261438 + MLT1E1 LTR MaLR 39 647 -7 582 295 48 53 chr3 23263148 23263622 -204260956 + HAL1b LINE L1 181 652 -696 345 259 0 27 chr3 23263645 23263757 -204260821 + HAL1b LINE L1 733 841 -507 360 274 79 24 chr3 23263764 23263928 -204260650 + L1ME3A LINE L1 3090 3262 -2867 892 150 14 0 chr3 23264055 23264195 -204260383 - AluSg/x SINE Alu -7 305 164 371 312 93 60 chr3 23264459 23264728 -204259850 - MLT1J LTR MaLR -137 374 97 576 125 231 81 chr3 23264752 23264912 -204259666 - MER53 DNA DNA -3 186 3 271 95 0 0 chr3 23265045 23265087 -204259491 - L1MC5 LINE L1 -436 7525 7484 501 245 198 35 chr3 23265352 23265802 -204258776 + MLT1H LTR MaLR 1 549 0 584 278 180 19 chr3 23265809 23266483 -204258095 + L1ME3A LINE L1 4940 5753 -408 236 229 74 90 chr3 23266503 23266625 -204257953 + L1ME3A LINE L1 5948 6067 -86 2363 85 0 0 chr3 23267068 23267362 -204257216 - AluSc SINE Alu -9 300 7 1469 55 76 114 chr3 23268782 23269019 -204255559 + MER30 DNA MER1_type 1 228 -2 450 292 62 25 chr3 23269507 23269668 -204254910 - MER5B DNA MER1_type -4 174 8 2215 131 3 0 chr3 23269787 23270092 -204254486 - AluSx SINE Alu -6 306 1 308 217 64 77 chr3 23270143 23270273 -204254305 + L1ME3 LINE L1 6040 6332 -2 2587 135 8 3 chr3 23270372 23270734 -204253844 + THE1B LTR MaLR 1 364 0 10962 101 30 62 chr3 23270736 23272181 -204252397 + THE1B-int LTR MaLR 3 1392 -188 2388 81 0 0 chr3 23272181 23272478 -204252100 - AluY SINE Alu -14 297 1 10962 101 30 62 chr3 23272478 23272662 -204251916 + THE1B-int LTR MaLR 1392 1580 0 2542 108 14 6 chr3 23272664 23273017 -204251561 + THE1B LTR MaLR 8 363 -1 600 196 77 14 chr3 23274903 23275046 -204249532 - MIR SINE MIR -106 156 5 420 322 40 40 chr3 23275066 23275215 -204249363 + L2 LINE L2 3124 3272 0 214 346 63 79 chr3 23275975 23276229 -204248349 - L2 LINE L2 0 3272 3023 582 237 8 8 chr3 23276423 23276541 -204248037 + FLAM_A SINE Alu 1 118 -15 508 267 144 78 chr3 23276569 23276839 -204247739 - L2 LINE L2 -25 3247 2960 375 311 18 30 chr3 23276845 23277009 -204247569 - L2 LINE L2 -852 2462 2301 812 253 118 0 chr3 23277248 23277469 -204247109 - MIR SINE MIR -15 247 1 2137 94 14 0 chr3 23277533 23277808 -204246770 + AluSp SINE Alu 1 279 -34 315 49 0 0 chr3 23277823 23277864 -204246714 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 466 258 40 7 chr3 23278482 23278633 -204245945 + L1M4 LINE L1 2724 2879 -3267 483 189 36 0 chr3 23278649 23278760 -204245818 + L1M4 LINE L1 3208 3322 -2824 * 1292 218 73 46 chr3 23278755 23279278 -204245300 + L1M4 LINE L1 2876 3412 -2734 293 124 56 101 chr3 23279854 23279943 -204244635 - L1ME4a LINE L1 -3 6118 6034 2469 100 0 0 chr3 23279943 23280253 -204244325 + AluSx SINE Alu 1 310 -2 1363 192 22 11 chr3 23280826 23281102 -204243476 + AluJo SINE Alu 19 297 -15 228 67 0 0 chr3 23281429 23281459 -204243119 + (TG)n Simple_repeat Simple_repeat 2 31 0 2314 86 0 26 chr3 23281726 23282028 -204242550 - AluSc SINE Alu -15 294 1 2298 83 7 20 chr3 23282077 23282242 -204242336 - AluSq SINE Alu -15 298 137 2342 93 7 0 chr3 23282242 23282543 -204242035 - AluSp SINE Alu -10 303 1 2298 83 7 20 chr3 23282543 23282679 -204241899 - AluSq SINE Alu -176 137 1 417 208 0 0 chr3 23283192 23283269 -204241309 + MER103 DNA DNA 51 127 -39 183 288 25 88 chr3 23284303 23284383 -204240195 - L2 LINE L2 -3 3310 3236 2121 122 3 32 chr3 23284564 23284876 -204239702 + AluSx SINE Alu 2 304 -8 336 286 38 68 chr3 23284879 23284963 -204239615 + MIR SINE MIR 23 103 -159 2248 118 0 3 chr3 23284963 23285267 -204239311 + AluSx SINE Alu 1 303 -9 336 286 38 68 chr3 23285267 23285315 -204239263 + MIR SINE MIR 103 151 -111 222 261 0 15 chr3 23285345 23285410 -204239168 + MIR SINE MIR 137 200 -62 1624 209 0 7 chr3 23285415 23285711 -204238867 - AluJb SINE Alu -18 294 1 1215 204 46 24 chr3 23285966 23286294 -204238284 + MER2 DNA MER2_type 2 336 -9 247 269 0 54 chr3 23286516 23286609 -204237969 - L1MC4 LINE L1 -1340 6702 6615 260 229 0 83 chr3 23286611 23286707 -204237871 + L1MC4 LINE L1 6615 6702 -1340 495 178 0 50 chr3 23286722 23286902 -204237676 + (TA)n Simple_repeat Simple_repeat 1 171 0 21 36 0 0 chr3 23286925 23286953 -204237625 + AT_rich Low_complexity Low_complexity 1 28 0 1141 171 72 81 chr3 23287278 23287612 -204236966 + L1MA9 LINE L1 5946 6276 -36 2318 92 0 3 chr3 23287674 23287968 -204236610 - AluSx SINE Alu -19 293 1 293 124 56 101 chr3 23287968 23288057 -204236521 + L1ME4a LINE L1 6034 6118 -3 431 222 0 53 chr3 23288315 23288504 -204236074 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 560 417 0 0 chr3 23288504 23288856 -204235722 + (CGTG)n Simple_repeat Simple_repeat 1 352 0 234 294 47 0 chr3 23288957 23289042 -204235536 + L1MC4 LINE L1 6615 6703 -1339 * 296 233 0 44 chr3 23288977 23289067 -204235511 - L1MC4 LINE L1 -1342 6700 6615 1786 165 0 20 chr3 23289070 23289367 -204235211 - AluJb SINE Alu -21 291 1 2333 93 0 13 chr3 23289633 23289946 -204234632 - AluSc SINE Alu 0 309 1 2158 117 3 3 chr3 23290693 23290992 -204233586 - AluSx SINE Alu -13 299 1 1988 158 0 7 chr3 23291227 23291530 -204233048 - AluJb SINE Alu -11 301 1 440 246 8 87 chr3 23291994 23292120 -204232458 + FLAM_A SINE Alu 1 116 -26 1985 155 3 0 chr3 23292123 23292433 -204232145 - AluJb SINE Alu -1 311 1 618 180 18 0 chr3 23292433 23292544 -204232034 - MLT1B LTR MaLR -277 113 1 403 276 167 13 chr3 23292566 23292722 -204231856 + MIR SINE MIR 14 193 -69 217 368 75 9 chr3 23294085 23294155 -204230423 - MIR SINE MIR -79 129 48 2407 91 0 0 chr3 23294155 23294452 -204230126 - AluSg SINE Alu -13 297 1 217 368 75 9 chr3 23294452 23294487 -204230091 - MIR SINE MIR -160 48 17 1121 167 24 33 chr3 23295402 23295612 -204228966 - MER3 DNA MER1_type 0 209 2 306 261 90 148 chr3 23296142 23296499 -204228079 - L2 LINE L2 -50 3222 2887 1665 154 22 11 chr3 23297367 23297640 -204226938 + AluSx SINE Alu 11 286 -26 1014 171 0 12 chr3 23297952 23298122 -204226456 + FRAM SINE Alu 1 160 -16 189 0 0 0 chr3 23298833 23298854 -204225724 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2397 76 0 0 chr3 23299046 23299349 -204225229 - L1P LINE L1 -5843 303 1 248 250 0 0 chr3 23299748 23299800 -204224778 - L2 LINE L2 0 3272 3221 883 279 102 48 chr3 23300426 23300841 -204223737 + L1M4 LINE L1 3928 4319 -1827 1836 154 3 3 chr3 23300841 23301126 -204223452 + AluSx SINE Alu 24 308 -4 883 279 102 48 chr3 23301126 23301601 -204222977 + L1M4 LINE L1 4319 4866 -1280 1188 76 0 0 chr3 23301613 23301758 -204222820 + AluSq SINE Alu 30 174 -139 22 70 0 0 chr3 23301991 23302034 -204222544 + AT_rich Low_complexity Low_complexity 1 43 0 470 329 111 8 chr3 23302070 23302304 -204222274 - MIR SINE MIR 0 262 5 2274 180 43 35 chr3 23302305 23302765 -204221813 + MLT2C2 LTR ERVL 1 464 0 222 325 51 45 chr3 23302792 23302949 -204221629 - MIR SINE MIR -57 205 48 1490 128 0 0 chr3 23303083 23303287 -204221291 + AluSq SINE Alu 1 204 -109 10067 50 1 1 chr3 23304833 23306083 -204218495 + L1P LINE L1 1715 2964 -3182 1108 46 0 0 chr3 23306184 23306315 -204218263 + AluSc SINE Alu 142 272 -37 450 304 88 44 chr3 23306732 23306912 -204217666 - MARNA DNA Mariner -119 467 296 2224 99 3 0 chr3 23306912 23307227 -204217351 + AluSp SINE Alu 1 313 0 450 304 88 44 chr3 23307227 23307431 -204217147 - MARNA DNA Mariner -290 296 66 535 282 67 5 chr3 23308412 23308607 -204215971 - MIR SINE MIR -4 258 52 276 197 118 0 chr3 23308779 23308855 -204215723 + L1ME3 LINE L1 5890 5974 -188 2064 142 19 30 chr3 23308878 23309245 -204215333 + MLT1A1 LTR MaLR 1 363 -2 485 180 9 9 chr3 23309246 23309357 -204215221 + MLT1A1-int LTR MaLR 3 113 -1622 26 0 0 0 chr3 23309368 23309394 -204215184 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr3 23309661 23309687 -204214891 + AT_rich Low_complexity Low_complexity 1 26 0 230 333 107 20 chr3 23310500 23310650 -204213928 - MIR SINE MIR -70 192 30 22 0 0 0 chr3 23310702 23310724 -204213854 + AT_rich Low_complexity Low_complexity 1 22 0 2071 135 10 6 chr3 23311269 23311580 -204212998 + AluSx SINE Alu 1 312 0 6654 45 6 0 chr3 23311645 23312490 -204212088 - L1PA5 LINE L1 -2 6152 5303 792 229 0 6 chr3 23315584 23315741 -204208837 - FRAM SINE Alu -13 163 8 1215 173 17 4 chr3 23316975 23317206 -204207372 + L1MB8 LINE L1 5789 6022 -156 2229 99 0 32 chr3 23317232 23317545 -204207033 - AluSx SINE Alu -9 303 1 604 174 97 107 chr3 23317963 23318159 -204206419 - MER20 DNA MER1_type -3 216 23 359 231 135 14 chr3 23318181 23318332 -204206246 + L1ME3 LINE L1 5660 5829 -333 390 169 34 11 chr3 23319426 23319515 -204205063 + MER103 DNA DNA 2 92 -74 212 171 0 0 chr3 23320079 23320120 -204204458 + A-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 23320590 23320620 -204203958 + AT_rich Low_complexity Low_complexity 1 30 0 608 264 26 31 chr3 23321160 23321353 -204203225 + MIR SINE MIR 24 215 -47 2231 104 24 0 chr3 23321534 23321832 -204202746 - AluSx SINE Alu -5 307 3 1690 182 26 10 chr3 23321834 23322136 -204202442 - AluJo SINE Alu -5 307 1 756 247 0 0 chr3 23322368 23322514 -204202064 + FRAM SINE Alu 1 146 -30 445 215 123 8 chr3 23322553 23322683 -204201895 - MIR SINE MIR -55 207 63 207 0 0 0 chr3 23322684 23322707 -204201871 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 653 200 8 17 chr3 23322709 23322829 -204201749 - FLAM_A SINE Alu -13 120 2 180 133 0 0 chr3 23323719 23323749 -204200829 - MIR3 SINE MIR -19 189 160 23 54 0 0 chr3 23325014 23325051 -204199527 + AT_rich Low_complexity Low_complexity 1 37 0 1638 151 59 11 chr3 23325137 23325409 -204199169 - AluJo SINE Alu -27 285 1 1640 180 28 3 chr3 23325427 23325711 -204198867 - AluJb SINE Alu -16 296 6 891 199 80 74 chr3 23326059 23326411 -204198167 - L1ME2 LINE L1 -19 6145 5792 1989 146 3 3 chr3 23327296 23327597 -204196981 - AluSx SINE Alu -11 301 1 1090 261 87 34 chr3 23327668 23328164 -204196414 + MER77 LTR ERV1 54 599 -6 662 211 99 0 chr3 23328321 23328482 -204196096 + MLT1C LTR MaLR 287 463 -4 1593 165 91 0 chr3 23329063 23329348 -204195230 + AluJo SINE Alu 1 311 -1 1939 176 0 7 chr3 23330253 23330555 -204194023 + AluJb SINE Alu 5 304 -8 841 210 258 0 chr3 23330613 23330884 -204193694 - MER2 DNA MER2_type -2 342 2 12422 130 63 47 chr3 23331018 23331317 -204193261 + Tigger1 DNA MER2_type 3 296 -2122 1979 147 3 0 chr3 23331317 23331602 -204192976 + AluSx SINE Alu 4 289 -23 12422 130 63 47 chr3 23331602 23332847 -204191731 + Tigger1 DNA MER2_type 296 1519 -899 2294 83 36 0 chr3 23332847 23333149 -204191429 + AluSq SINE Alu 1 313 0 12422 130 63 47 chr3 23333149 23333853 -204190725 + Tigger1 DNA MER2_type 1519 2296 -122 1664 193 4 4 chr3 23333853 23334133 -204190445 - AluJo SINE Alu -24 288 9 12422 130 63 47 chr3 23334133 23334258 -204190320 + Tigger1 DNA MER2_type 2296 2417 -1 664 246 116 43 chr3 23334392 23334738 -204189840 - MLT1I LTR MaLR 0 409 39 181 307 117 58 chr3 23334807 23334944 -204189634 + L2 LINE L2 2910 3054 -218 1350 146 154 20 chr3 23335449 23335702 -204188876 - AluJb SINE Alu -15 287 1 964 188 167 61 chr3 23336339 23336668 -204187910 + MLT1A1 LTR MaLR 1 364 -1 1921 72 8 0 chr3 23337185 23337422 -204187156 + AluSq SINE Alu 72 310 -3 2165 109 7 7 chr3 23338429 23338732 -204185846 + AluSx SINE Alu 1 303 -9 1254 209 4 4 chr3 23339550 23339785 -204184793 - MER8 DNA MER2_type 0 239 5 1442 150 124 23 chr3 23341632 23341939 -204182639 + MER44D DNA MER2_type 1 608 -1 181 323 108 54 chr3 23341956 23342086 -204182492 + MIR3 SINE MIR 70 206 -2 1713 173 25 3 chr3 23343159 23343442 -204181136 - AluJo SINE Alu -11 301 13 6452 106 49 22 chr3 23343846 23344202 -204180376 - MER11C LTR ERVK 0 1071 726 2073 21 0 0 chr3 23344202 23344437 -204180141 + 7SLRNA srpRNA srpRNA 1 235 -85 6452 106 49 22 chr3 23344437 23345123 -204179455 - MER11C LTR ERVK -345 726 1 1839 190 125 4 chr3 23345584 23346073 -204178505 + L1ME2 LINE L1 5615 6162 -2 26 0 0 0 chr3 23346236 23346262 -204178316 + AT_rich Low_complexity Low_complexity 1 26 0 2390 78 3 0 chr3 23346602 23346908 -204177670 + AluY SINE Alu 1 307 -4 227 369 124 59 chr3 23346913 23347476 -204177102 + L3 LINE CR1 100 699 -878 4905 97 23 55 chr3 23347478 23348276 -204176302 + SVA Other Other 95 866 -520 1115 113 16 115 chr3 23348287 23348774 -204175804 + SVA Other Other 430 868 -518 6068 71 26 52 chr3 23348818 23349807 -204174771 + SVA Other Other 433 1396 0 225 266 21 64 chr3 23349814 23349908 -204174670 + L3 LINE CR1 689 778 -799 465 19 0 0 chr3 23349970 23350024 -204174554 + (CA)n Simple_repeat Simple_repeat 2 55 0 238 277 39 69 chr3 23350107 23350237 -204174341 + L3 LINE CR1 1092 1217 -360 510 231 77 0 chr3 23350237 23350380 -204174198 + MER105 DNA DNA 1 154 -50 1929 137 13 22 chr3 23350728 23351041 -204173537 - AluSq SINE Alu -3 310 1 13503 181 24 5 chr3 23351042 23354683 -204169895 - L1P5 LINE L1 -367 6500 2796 852 117 0 0 chr3 23354688 23354825 -204169753 - L1P5 LINE L1 -4129 2734 2598 2048 116 20 3 chr3 23404915 23405209 -204119369 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 23405686 23405717 -204118861 + AT_rich Low_complexity Low_complexity 1 31 0 394 298 32 8 chr3 23406356 23406480 -204118098 + L2 LINE L2 2504 2630 -684 2178 103 17 7 chr3 23406536 23406838 -204117740 + AluSc SINE Alu 4 308 -1 479 278 86 5 chr3 23406855 23407042 -204117536 + L2 LINE L2 3060 3261 -52 24 53 0 0 chr3 23407316 23407354 -204117224 + AT_rich Low_complexity Low_complexity 1 38 0 879 186 77 41 chr3 23407457 23407678 -204116900 + AluJo SINE Alu 83 311 -1 503 230 165 99 chr3 23408346 23408553 -204116025 + MLT1J LTR MaLR 1 193 -318 1868 92 0 88 chr3 23408553 23408859 -204115719 + AluY SINE Alu 1 279 -32 247 24 24 24 chr3 23408861 23408902 -204115676 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 503 230 165 99 chr3 23408902 23409104 -204115474 + MLT1J LTR MaLR 193 440 -71 1441 145 16 36 chr3 23409375 23409624 -204114954 + AluJo SINE Alu 38 281 -31 200 213 33 49 chr3 23411185 23411246 -204113332 - MER5A DNA MER1_type -129 60 1 228 67 0 0 chr3 23411373 23411403 -204113175 + (TA)n Simple_repeat Simple_repeat 2 31 0 1441 202 84 81 chr3 23411969 23411987 -204112591 + L1M4 LINE L1 2669 2685 -3461 2304 165 7 30 chr3 23411987 23412101 -204112477 - MSTB LTR MaLR 0 426 311 2279 87 0 0 chr3 23412101 23412399 -204112179 + AluSx SINE Alu 1 298 -14 2304 165 7 30 chr3 23412399 23412720 -204111858 - MSTB LTR MaLR -115 311 1 1441 202 84 81 chr3 23412720 23413296 -204111282 + L1M4 LINE L1 2685 3265 -2881 915 238 92 27 chr3 23413349 23413643 -204110935 + L1M4 LINE L1 3638 3950 -2196 24 0 0 0 chr3 23413643 23413667 -204110911 + AT_rich Low_complexity Low_complexity 1 24 0 1178 102 0 0 chr3 23413669 23413826 -204110752 - AluSg/x SINE Alu -21 291 135 3822 229 96 26 chr3 23413839 23414316 -204110262 + L1M4 LINE L1 3952 4394 -1752 2001 134 28 0 chr3 23414316 23414607 -204109971 + AluSx SINE Alu 1 299 -13 3822 229 96 26 chr3 23414607 23415415 -204109163 + L1M4 LINE L1 4394 5328 -818 584 293 57 47 chr3 23415418 23415842 -204108736 + L1ME3A LINE L1 4909 5336 -810 2182 107 0 0 chr3 23415859 23416150 -204108428 - AluSx SINE Alu -21 291 1 3811 209 35 22 chr3 23416283 23417112 -204107466 - MER21B LTR ERV1 -20 843 4 526 270 194 12 chr3 23417147 23417399 -204107179 + L1ME3A LINE L1 5503 5800 -370 259 226 108 0 chr3 23417415 23417508 -204107070 + L1ME3A LINE L1 5860 5962 -208 323 200 208 54 chr3 23417626 23417756 -204106822 + L1ME3A LINE L1 6020 6169 -1 2228 110 10 0 chr3 23417967 23418275 -204106303 + AluY SINE Alu 1 311 0 486 0 0 0 chr3 23418823 23418877 -204105701 + (CA)n Simple_repeat Simple_repeat 2 55 0 1291 243 56 63 chr3 23419251 23419696 -204104882 - MLT1E3 LTR MaLR -43 581 140 1748 126 78 28 chr3 23419738 23420095 -204104483 + THE1C LTR MaLR 1 375 0 313 209 12 47 chr3 23420582 23420668 -204103910 + MIR3 SINE MIR 116 198 -10 6084 166 23 8 chr3 23420910 23422084 -204102494 + L1 LINE L1 3998 5188 -958 416 186 98 0 chr3 23422091 23422193 -204102385 + L1 LINE L1 5224 5335 -811 907 193 128 0 chr3 23422193 23422380 -204102198 + MLT2B3 LTR ERVL 1 211 -343 715 119 30 22 chr3 23422381 23422515 -204102063 + L1MA7 LINE L1 6155 6289 -2 411 278 83 19 chr3 23422765 23422952 -204101626 + L1ME1 LINE L1 496 699 -5908 644 188 124 60 chr3 23422952 23423170 -204101408 - MER106A DNA MER1_type 0 236 5 411 278 83 19 chr3 23423170 23423187 -204101391 + L1ME1 LINE L1 699 713 -5894 386 211 22 22 chr3 23423192 23423282 -204101296 + L1ME1 LINE L1 746 835 -5772 246 200 146 0 chr3 23423296 23423406 -204101172 + L1ME1 LINE L1 4642 4767 -1659 1834 217 30 30 chr3 23423476 23423936 -204100642 + MER101 LTR ERV1 11 470 -4 2029 213 122 21 chr3 23423938 23424730 -204099848 + L1ME1 LINE L1 5289 6163 -283 * 3769 158 216 12 chr3 23424721 23425790 -204098788 + L1MC1 LINE L1 1284 2569 -3857 1453 118 0 108 chr3 23425771 23426058 -204098520 + L1M4c LINE L1 6 261 -6123 * 5957 156 48 9 chr3 23426076 23427342 -204097236 + L1MC1 LINE L1 5296 6613 0 428 235 84 8 chr3 23427340 23427459 -204097119 + L1ME1 LINE L1 6156 6283 -163 * 690 221 13 0 chr3 23427467 23427625 -204096953 + L1MA10 LINE L1 6175 6334 0 26 64 0 0 chr3 23427888 23427935 -204096643 + AT_rich Low_complexity Low_complexity 1 47 0 344 317 84 0 chr3 23428008 23428175 -204096403 + L1MC4a LINE L1 5733 5913 -1895 22 70 0 0 chr3 23429572 23429615 -204094963 + AT_rich Low_complexity Low_complexity 1 43 0 212 330 51 91 chr3 23429820 23430017 -204094561 - MIR3 SINE MIR -16 192 4 359 248 84 84 chr3 23430138 23430412 -204094166 + MLT1L LTR MaLR 12 285 -330 240 35 0 0 chr3 23430412 23430441 -204094137 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr3 23430745 23430779 -204093799 + AT_rich Low_complexity Low_complexity 1 34 0 10708 137 43 14 chr3 23430784 23433826 -204090752 + L1MA1 LINE L1 3177 6294 -8 2143 87 0 14 chr3 23434757 23435043 -204089535 + AluSx SINE Alu 1 282 -30 210 37 0 0 chr3 23435046 23435073 -204089505 + (CATA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr3 23435131 23435155 -204089423 + AT_rich Low_complexity Low_complexity 1 24 0 437 231 132 19 chr3 23435780 23435992 -204088586 + L1MC4 LINE L1 7807 8042 0 183 278 270 9 chr3 23439907 23440022 -204084556 - MIR SINE MIR -44 218 74 24 0 0 0 chr3 23440444 23440468 -204084110 + AT_rich Low_complexity Low_complexity 1 24 0 187 261 0 22 chr3 23440755 23440801 -204083777 + L2 LINE L2 3181 3225 -88 476 289 85 25 chr3 23441039 23441240 -204083338 + MIR SINE MIR 4 216 -46 * 506 258 46 62 chr3 23441221 23441415 -204083163 + MIR SINE MIR 6 196 -66 196 231 135 0 chr3 23441880 23441932 -204082646 - L2 LINE L2 -76 3237 3179 1072 257 123 20 chr3 23443045 23443442 -204081136 + MLT1J LTR MaLR 72 509 -2 222 308 96 0 chr3 23443793 23443897 -204080681 - L2 LINE L2 -3 3310 3197 876 343 70 24 chr3 23443962 23444310 -204080268 - L2 LINE L2 -409 2905 2530 2293 97 3 0 chr3 23444310 23444609 -204079969 + AluSg SINE Alu 1 300 -10 876 343 70 24 chr3 23444609 23444715 -204079863 - L2 LINE L2 -784 2530 2430 245 128 0 0 chr3 23447446 23447485 -204077093 - tRNA-Gly-GGA tRNA tRNA -36 39 1 2310 98 0 0 chr3 23447500 23447795 -204076783 - AluSx SINE Alu -17 295 1 622 340 81 10 chr3 23447920 23448326 -204076252 - MLT1L LTR MaLR -49 566 132 442 306 159 9 chr3 23448614 23448846 -204075732 + L3 LINE CR1 1116 1382 -195 368 328 87 6 chr3 23448938 23449121 -204075457 - MIR SINE MIR -45 217 20 184 272 191 55 chr3 23449760 23449995 -204074583 + L2 LINE L2 1837 2103 -1211 256 309 74 54 chr3 23450387 23450536 -204074042 + MLT1K LTR MaLR 157 308 -280 419 184 26 0 chr3 23450645 23450721 -204073857 + MLT1K LTR MaLR 509 586 -2 215 347 0 10 chr3 23450858 23450956 -204073622 + L2 LINE L2 2890 2986 -286 270 419 7 13 chr3 23451051 23451206 -204073372 - L2 LINE L2 -567 2747 2594 433 277 96 50 chr3 23451211 23451587 -204072991 + L1ME4a LINE L1 5536 5928 -193 182 321 62 25 chr3 23451743 23451824 -204072754 - MIR SINE MIR -66 142 59 1098 134 0 6 chr3 23452432 23452596 -204071982 - AluSg/x SINE Alu -16 296 134 22 70 0 0 chr3 23453341 23453384 -204071194 + AT_rich Low_complexity Low_complexity 1 43 0 1839 132 7 14 chr3 23453387 23453676 -204070902 + AluJb SINE Alu 13 299 -13 222 91 0 0 chr3 23454916 23454949 -204069629 + (CA)n Simple_repeat Simple_repeat 2 34 0 31 58 0 0 chr3 23455155 23455207 -204069371 + AT_rich Low_complexity Low_complexity 1 52 0 26 64 0 0 chr3 23455365 23455412 -204069166 + AT_rich Low_complexity Low_complexity 1 47 0 1595 188 35 3 chr3 23455599 23455886 -204068692 - AluJo SINE Alu -11 301 6 221 326 153 0 chr3 23456571 23456669 -204067909 - L2 LINE L2 -4 3309 3197 807 153 8 0 chr3 23457214 23457338 -204067240 + FLAM_C SINE Alu 8 132 -11 245 163 82 0 chr3 23457604 23457653 -204066925 - MER116 DNA Mariner -27 53 1 29 0 0 0 chr3 23457951 23457980 -204066598 + AT_rich Low_complexity Low_complexity 1 29 0 1160 249 79 14 chr3 23457995 23458412 -204066166 + L1M4 LINE L1 4060 4503 -1643 1235 190 75 51 chr3 23458419 23458531 -204066047 - MER44D DNA MER2_type -1882 609 501 1613 137 149 3 chr3 23458531 23458846 -204065732 + MER46B DNA MER2_type 1 236 0 1235 190 75 51 chr3 23458846 23459064 -204065514 - MER44D DNA MER2_type -1990 501 1 1395 236 55 14 chr3 23459064 23459289 -204065289 + L1M4 LINE L1 4514 4728 -1418 1837 188 0 0 chr3 23459289 23459587 -204064991 + AluJb SINE Alu 1 298 -14 1395 236 55 14 chr3 23459587 23459776 -204064802 + L1M4 LINE L1 4728 4945 -1201 276 219 98 24 chr3 23460103 23460185 -204064393 + MER5A DNA MER1_type 99 186 -3 247 259 0 0 chr3 23460486 23460540 -204064038 + (TATG)n Simple_repeat Simple_repeat 2 55 0 535 264 98 15 chr3 23460620 23460885 -204063693 + L1MC5 LINE L1 7290 7576 -385 21 71 0 0 chr3 23461031 23461073 -204063505 + AT_rich Low_complexity Low_complexity 1 42 0 1125 202 0 18 chr3 23461273 23461496 -204063082 - MER20 DNA MER1_type 0 219 1 2990 244 74 54 chr3 23461819 23463358 -204061220 + L1ME LINE L1 17 1524 -5120 1896 133 73 3 chr3 23463358 23463673 -204060905 - MER1B DNA MER1_type 0 337 1 2990 244 74 54 chr3 23463673 23464462 -204060116 + L1ME LINE L1 1524 2296 -4348 1620 167 49 3 chr3 23464462 23464749 -204059829 - AluJb SINE Alu -12 300 1 2990 244 74 54 chr3 23464749 23464928 -204059650 + L1ME LINE L1 2296 4924 -1720 228 303 0 40 chr3 23465415 23465514 -204059064 + MLT2E LTR ERVL 40 134 -494 311 268 162 35 chr3 23465773 23466001 -204058577 + L1ME LINE L1 5462 5718 -926 569 286 94 28 chr3 23466089 23466515 -204058063 + L1ME LINE L1 5836 6289 -379 452 189 0 0 chr3 23466536 23466626 -204057952 - L1PB4 LINE L1 -2 6154 6065 265 327 26 39 chr3 23467000 23467156 -204057422 - L2 LINE L2 -606 2708 2555 2763 123 41 16 chr3 23467261 23467747 -204056831 + L1MA8 LINE L1 5340 5837 -454 575 157 75 37 chr3 23467766 23467900 -204056678 - L1M3 LINE L1 -1141 5005 4867 * 1593 176 84 4 chr3 23467899 23468348 -204056230 + L1M3 LINE L1 5007 5480 -703 363 149 90 15 chr3 23468613 23468680 -204055898 + AluS SINE Alu 1 72 -227 551 45 0 0 chr3 23468843 23468909 -204055669 - AluSq/x SINE Alu -181 131 66 3825 200 170 31 chr3 23469326 23470588 -204053990 - Charlie1 DNA MER1_type -2 2759 7 1882 173 3 38 chr3 23470601 23470947 -204053631 + MER1B DNA MER1_type 4 337 0 2554 210 29 15 chr3 23470967 23471491 -204053087 + MER77 LTR ERV1 54 584 -21 962 161 5 57 chr3 23471709 23471901 -204052677 - MER20 DNA MER1_type -37 182 1 296 306 0 31 chr3 23472211 23472309 -204052269 + MER5B DNA MER1_type 2 96 -82 602 278 91 20 chr3 23472312 23472510 -204052068 - L2 LINE L2 -2 3311 3100 3042 168 71 13 chr3 23472775 23473377 -204051201 - L1PB4 LINE L1 -13 6143 5507 2972 88 8 5 chr3 23473377 23473776 -204050802 + MLT2A1 LTR ERVL 1 400 -44 238 113 56 28 chr3 23473777 23473848 -204050730 + (TA)n Simple_repeat Simple_repeat 1 73 0 329 20 122 0 chr3 23473859 23473908 -204050670 + MLT2A1 LTR ERVL 399 453 0 2705 164 93 17 chr3 23473908 23473986 -204050592 - L1PB4 LINE L1 -645 5511 5440 906 64 112 0 chr3 23473986 23474111 -204050467 + MER85 DNA T2_type 1 139 0 2705 164 93 17 chr3 23474111 23474788 -204049790 - L1PB4 LINE L1 -716 5440 4710 1719 154 0 0 chr3 23475207 23475466 -204049112 + AluSx SINE Alu 49 307 -5 316 224 116 99 chr3 23476111 23476343 -204048235 + L1MEc LINE L1 1708 1943 -4453 347 274 80 33 chr3 23476364 23476576 -204048002 + L1MEc LINE L1 1731 1952 -4444 4236 238 55 27 chr3 23476654 23477088 -204047490 + L1MEc LINE L1 2079 2499 -3716 2125 72 0 75 chr3 23477088 23477409 -204047169 + AluY SINE Alu 1 297 -14 4236 238 55 27 chr3 23477409 23478612 -204045966 + L1MEc LINE L1 2499 3761 -2454 2192 197 53 31 chr3 23478675 23478749 -204045829 + L1MB7 LINE L1 5575 5646 -538 2267 84 0 32 chr3 23478749 23479057 -204045521 + AluSq SINE Alu 1 298 -15 2192 197 53 31 chr3 23479057 23479570 -204045008 + L1MB7 LINE L1 5646 6175 -9 219 327 50 30 chr3 23479627 23479728 -204044850 + L3b LINE CR1 1286 1388 -195 8571 132 16 54 chr3 23479855 23481152 -204043426 + L1MA2 LINE L1 3656 4838 -1467 2217 101 10 3 chr3 23481152 23481450 -204043128 + AluSx SINE Alu 1 300 -12 8571 132 16 54 chr3 23481450 23482281 -204042297 + L1MA2 LINE L1 4838 5699 -606 217 200 42 33 chr3 23482297 23482417 -204042161 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 3218 107 50 53 chr3 23482432 23483030 -204041548 + L1MA2 LINE L1 5709 6304 0 2530 152 31 0 chr3 23483282 23483697 -204040881 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr3 23484057 23484078 -204040500 + AT_rich Low_complexity Low_complexity 1 21 0 2075 125 149 8 chr3 23485115 23485490 -204039088 - MSTA LTR MaLR 0 428 1 1600 173 184 11 chr3 23485952 23486316 -204038262 - MSTA LTR MaLR -1 427 1 2909 122 11 13 chr3 23486316 23486766 -204037812 - MSTA-int LTR MaLR 0 1580 1132 1039 263 86 41 chr3 23486910 23487329 -204037249 - MLT1J1 LTR MaLR -8 438 1 350 233 69 43 chr3 23487329 23487445 -204037133 - MER5A DNA MER1_type -40 149 31 269 281 74 66 chr3 23487339 23487460 -204037118 + MER5A DNA MER1_type 63 184 -5 * 525 322 163 36 chr3 23487753 23488331 -204036247 + L2 LINE L2 2262 2912 -402 250 371 16 8 chr3 23488434 23488558 -204036020 - L2 LINE L2 -999 2315 2191 1792 162 7 10 chr3 23488686 23488982 -204035596 + AluJo SINE Alu 1 295 -17 2437 196 143 4 chr3 23489000 23489692 -204034886 + L1MB8 LINE L1 3959 4746 -1400 844 292 27 95 chr3 23489692 23490250 -204034328 + MER34 LTR ERV1 1 520 -22 1424 172 7 24 chr3 23490280 23490498 -204034080 + L1MB8 LINE L1 4742 4962 -1184 189 0 0 0 chr3 23490498 23490519 -204034059 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 357 24 0 0 chr3 23490518 23490560 -204034018 + (GA)n Simple_repeat Simple_repeat 2 43 0 1424 172 7 24 chr3 23490519 23490631 -204033947 + L1MB8 LINE L1 4962 5026 -1120 748 225 146 36 chr3 23490640 23490893 -204033685 - MLT1C LTR MaLR 0 467 187 2481 157 86 48 chr3 23490905 23491428 -204033150 + MER21B LTR ERV1 320 862 -1 616 173 83 18 chr3 23491443 23491546 -204033032 + L1MB8 LINE L1 5338 5433 -745 1575 181 0 38 chr3 23491546 23491885 -204032693 + AluJb SINE Alu 3 330 0 616 173 83 18 chr3 23491885 23492513 -204032065 + L1MB8 LINE L1 5433 6176 -2 2580 68 0 0 chr3 23492846 23493153 -204031425 + AluY SINE Alu 2 308 -3 2547 63 0 0 chr3 23493759 23494062 -204030516 - AluY SINE Alu -8 303 1 2335 101 0 0 chr3 23495063 23495370 -204029208 + AluSc SINE Alu 2 308 -1 192 40 0 0 chr3 23495630 23495655 -204028923 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1710 156 40 6 chr3 23495914 23496240 -204028338 + L1MB7 LINE L1 5829 6165 -19 262 286 38 60 chr3 23496419 23496552 -204028026 + Charlie8 DNA MER1_type 83 212 -2205 2288 100 0 0 chr3 23497579 23497878 -204026700 - AluSx SINE Alu -13 299 1 813 192 126 0 chr3 23498344 23498526 -204026052 + MER3 DNA MER1_type 5 209 0 310 325 118 70 chr3 23499248 23499847 -204024731 + L1M2 LINE L1 841 1468 -5381 284 62 0 21 chr3 23499855 23499903 -204024675 + (CCG)n Simple_repeat Simple_repeat 1 47 0 342 324 111 56 chr3 23499926 23500232 -204024346 + L1M2 LINE L1 462 784 -6065 * 430 313 163 54 chr3 23500211 23500659 -204023919 - L1M2 LINE L1 -5596 1253 757 186 43 0 0 chr3 23501326 23501349 -204023229 + (A)n Simple_repeat Simple_repeat 1 23 0 223 235 39 0 chr3 23502203 23502254 -204022324 + MIR SINE MIR 88 140 -122 8058 115 21 28 chr3 23502375 23503621 -204020957 - HSMAR2 DNA Mariner -2 1300 62 1749 182 27 0 chr3 23503621 23503917 -204020661 + AluSx SINE Alu 1 304 -8 8058 115 21 28 chr3 23503917 23503979 -204020599 - HSMAR2 DNA Mariner -1240 62 1 2288 121 0 0 chr3 23504025 23504331 -204020247 + AluSx SINE Alu 1 306 -6 295 253 92 0 chr3 23504891 23504978 -204019600 - MIR SINE MIR -110 152 58 1625 207 7 7 chr3 23505111 23505415 -204019163 + AluJo SINE Alu 7 310 -2 539 308 78 16 chr3 23505421 23505863 -204018715 + L1MEd LINE L1 1158 1713 -863 481 357 127 18 chr3 23506214 23506601 -204017977 - LTR67 LTR ERVL -93 464 36 333 336 77 37 chr3 23506639 23507216 -204017362 + L1MEd LINE L1 2042 2602 -3613 1600 140 22 0 chr3 23507224 23507452 -204017126 + AluSx SINE Alu 3 235 -77 26 30 0 0 chr3 23508107 23508140 -204016438 + AT_rich Low_complexity Low_complexity 1 33 0 806 185 205 21 chr3 23508147 23508507 -204016071 + L1MEc LINE L1 2176 2560 -3655 4565 175 46 39 chr3 23508533 23509977 -204014601 + L1MA9 LINE L1 4374 5825 -487 2021 131 6 19 chr3 23509977 23510290 -204014288 + AluSg SINE Alu 1 309 -1 4565 175 46 39 chr3 23510290 23510744 -204013834 + L1MA9 LINE L1 5825 6274 -38 2359 214 119 13 chr3 23510731 23511446 -204013132 + L1MEc LINE L1 2582 3372 -2843 * 2742 290 112 31 chr3 23511488 23511996 -204012582 - L2 LINE L2 -1217 2097 1631 1805 212 174 2 chr3 23511996 23512439 -204012139 - LTR40a LTR ERVL 0 519 1 2742 290 112 31 chr3 23512439 23513370 -204011208 - L2 LINE L2 -1683 1631 542 23 0 0 0 chr3 23513379 23513402 -204011176 + AT_rich Low_complexity Low_complexity 1 23 0 501 296 66 36 chr3 23513516 23513712 -204010866 + MIR3 SINE MIR 4 205 -3 195 338 14 0 chr3 23514565 23514639 -204009939 + L2 LINE L2 3192 3266 -47 252 328 106 6 chr3 23514658 23514824 -204009754 - L2 LINE L2 -245 3068 2873 211 219 0 62 chr3 23514882 23514946 -204009632 + CT-rich Low_complexity Low_complexity 4 63 0 236 353 147 0 chr3 23514946 23515136 -204009442 - L2 LINE L2 -567 2747 2530 303 125 0 0 chr3 23515157 23515205 -204009373 + AluJ/FLAM SINE Alu 37 84 -218 910 241 106 20 chr3 23515269 23515617 -204008961 - L2 LINE L2 -807 2507 2130 278 311 143 17 chr3 23516145 23516264 -204008314 + L2 LINE L2 3180 3313 0 1007 265 123 44 chr3 23516507 23517058 -204007520 + MLT1G1 LTR MaLR 1 595 0 1106 292 21 3 chr3 23517127 23517456 -204007122 + L1MC4a LINE L1 5580 5914 -1894 2247 105 0 7 chr3 23517470 23517775 -204006803 - AluSc SINE Alu -6 303 1 2287 104 7 3 chr3 23517819 23518126 -204006452 + AluSx SINE Alu 1 308 -4 201 94 0 0 chr3 23518258 23518290 -204006288 + (CAG)n Simple_repeat Simple_repeat 3 34 0 245 29 29 0 chr3 23520596 23520630 -204003948 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1375 219 63 27 chr3 23520638 23521112 -204003466 + L1MC5 LINE L1 7411 7901 -60 1278 176 112 46 chr3 23521114 23521386 -204003192 + MER2 DNA MER2_type 2 300 -45 1064 91 24 18 chr3 23521386 23521551 -204003027 - L1MA5 LINE L1 0 6300 6135 1278 176 112 46 chr3 23521551 23521601 -204002977 + MER2 DNA MER2_type 300 345 0 1903 164 3 26 chr3 23521997 23522308 -204002270 - AluJo SINE Alu -8 304 1 882 228 27 0 chr3 23522701 23522885 -204001693 + MER5A DNA MER1_type 1 189 0 2017 121 17 3 chr3 23523301 23523598 -204000980 + AluSx SINE Alu 4 304 -8 320 131 82 0 chr3 23523631 23523692 -204000886 + Charlie5 DNA MER1_type 2498 2563 -49 664 125 50 0 chr3 23524090 23524210 -204000368 - L1MA3 LINE L1 0 6305 6180 477 338 13 6 chr3 23524543 23524700 -203999878 - MER117 DNA MER1_type 0 197 40 635 228 73 49 chr3 23525078 23525316 -203999262 - MLT1J LTR MaLR 0 511 338 1753 153 115 24 chr3 23525388 23525468 -203999110 + MLT1D LTR MaLR 1 72 -433 1941 124 78 12 chr3 23525468 23525799 -203998779 - THE1A LTR MaLR -2 353 1 1753 153 115 24 chr3 23525799 23526057 -203998521 + MLT1D LTR MaLR 72 370 -135 3188 176 0 19 chr3 23526073 23526589 -203997989 + MLT2B3 LTR ERVL 3 508 -46 387 89 0 0 chr3 23526593 23526649 -203997929 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 357 119 0 0 chr3 23526650 23526703 -203997875 + MLT2B2 LTR ERVL 410 463 -47 240 111 0 0 chr3 23526703 23526739 -203997839 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 340 45 0 0 chr3 23526740 23526784 -203997794 + MLT2B2 LTR ERVL 410 453 -62 216 67 0 0 chr3 23526784 23526814 -203997764 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 556 99 55 22 chr3 23526815 23526864 -203997714 + MLT2B3 LTR ERVL 460 506 -48 657 69 0 0 chr3 23526864 23526951 -203997627 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 556 99 55 22 chr3 23526951 23526992 -203997586 + MLT2B3 LTR ERVL 506 553 -1 4589 195 38 18 chr3 23526993 23528333 -203996245 + MLT1A1-int LTR MaLR 1 1370 -1 2158 169 31 0 chr3 23528334 23528688 -203995890 + MLT1A1 LTR MaLR 1 365 0 520 158 21 0 chr3 23528688 23528783 -203995795 + MLT1D LTR MaLR 409 505 0 345 317 43 12 chr3 23528838 23528999 -203995579 - MLT1J LTR MaLR -343 168 3 326 165 13 0 chr3 23529360 23529439 -203995139 + CT-rich Low_complexity Low_complexity 2 81 0 251 91 0 23 chr3 23529441 23529485 -203995093 + (TG)n Simple_repeat Simple_repeat 2 44 0 2546 162 115 9 chr3 23529489 23530035 -203994543 + Tigger6 DNA MER2_type 986 1597 0 1264 120 27 0 chr3 23530555 23530738 -203993840 + MSTB1 LTR MaLR 1 188 -244 980 189 12 0 chr3 23530738 23530902 -203993676 + FAM SINE Alu 1 166 -19 1003 191 55 34 chr3 23530902 23531137 -203993441 + MSTB1 LTR MaLR 193 432 0 346 327 24 38 chr3 23531580 23531791 -203992787 - MLT1L LTR MaLR -407 208 1 2389 105 3 0 chr3 23531886 23532192 -203992386 + AluSc SINE Alu 1 307 -2 527 238 33 0 chr3 23533369 23533491 -203991087 + MER5B DNA MER1_type 1 126 -52 2221 113 0 0 chr3 23533678 23533969 -203990609 - AluSx SINE Alu -21 291 1 182 37 37 0 chr3 23535802 23535829 -203988749 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1691 192 3 0 chr3 23535833 23536125 -203988453 - AluJo SINE Alu -19 293 1 2105 108 4 7 chr3 23536155 23536464 -203988114 + AluSg SINE Alu 3 310 0 278 182 0 76 chr3 23536643 23536709 -203987869 - MER3 DNA MER1_type -5 204 144 2220 213 34 45 chr3 23537086 23537622 -203986956 + MLT1E LTR MaLR 62 591 -2 360 262 74 90 chr3 23538140 23538384 -203986194 + LTR16A1 LTR ERVL 218 457 0 2055 132 7 0 chr3 23539131 23539432 -203985146 - AluSx SINE Alu 0 304 2 885 237 171 38 chr3 23539506 23539947 -203984631 - MLT1G1 LTR MaLR 0 595 20 1950 151 0 10 chr3 23540223 23540527 -203984051 - AluJb SINE Alu -11 301 1 1658 158 34 34 chr3 23540531 23540828 -203983750 - AluJb SINE Alu -15 297 1 845 158 25 54 chr3 23540843 23541011 -203983567 - Charlie5 DNA MER1_type -203 2421 2258 1952 91 36 39 chr3 23541011 23541319 -203983259 + AluSx SINE Alu 1 307 -5 845 158 25 54 chr3 23541319 23541353 -203983225 - Charlie5 DNA MER1_type -366 2258 2225 356 151 279 0 chr3 23541335 23541421 -203983157 - Charlie5 DNA MER1_type -2485 127 18 * 855 164 28 68 chr3 23541423 23541600 -203982978 - FRAM SINE Alu -14 162 1 1911 139 11 4 chr3 23541608 23541888 -203982690 - AluSx SINE Alu -30 282 1 207 0 0 0 chr3 23541933 23541956 -203982622 + (CA)n Simple_repeat Simple_repeat 1 23 0 250 182 0 0 chr3 23541961 23542005 -203982573 + MLT2F LTR ERVL 620 663 0 934 98 8 0 chr3 23542380 23542502 -203982076 - AluSq/x SINE Alu -190 123 1 37 53 0 13 chr3 23543579 23543615 -203980963 + AT_rich Low_complexity Low_complexity 1 36 -39 1902 154 10 16 chr3 23543615 23543921 -203980657 - AluJb SINE Alu -8 304 1 37 53 0 13 chr3 23543921 23543960 -203980618 + AT_rich Low_complexity Low_complexity 36 75 0 2127 131 0 0 chr3 23544013 23544304 -203980274 - AluSx SINE Alu -21 291 1 1688 156 34 30 chr3 23544308 23544603 -203979975 - AluJb SINE Alu -15 297 2 327 159 0 48 chr3 23544603 23544666 -203979912 - AluJo SINE Alu -159 143 84 1052 203 43 23 chr3 23544867 23545123 -203979455 - LTR16A1 LTR ERVL -19 438 178 208 158 0 88 chr3 23545588 23545645 -203978933 - L2 LINE L2 -1 3312 3261 366 206 0 14 chr3 23545648 23545721 -203978857 + MARNA DNA Mariner 395 466 -120 227 211 282 0 chr3 23545994 23546065 -203978513 - MIR SINE MIR -16 246 156 620 241 146 0 chr3 23546086 23546244 -203978334 - MER5A DNA MER1_type 0 189 9 425 229 59 8 chr3 23546921 23547039 -203977539 - MIR SINE MIR -74 188 65 632 335 70 0 chr3 23547041 23547271 -203977307 - MIR SINE MIR -10 252 7 612 261 18 45 chr3 23547915 23548137 -203976441 - LTR33 LTR ERVL -305 216 1 211 171 98 0 chr3 23548931 23548972 -203975606 + MIR SINE MIR 218 262 0 44647 42 4 0 chr3 23549126 23555258 -203969320 - L1PA4 LINE L1 0 6155 1 1900 165 3 0 chr3 23555258 23555561 -203969017 - AluSx SINE Alu -8 304 1 655 205 56 6 chr3 23555591 23555752 -203968826 + L1MC5 LINE L1 7257 7425 -536 933 213 87 42 chr3 23555755 23555836 -203968742 + MLT1B LTR MaLR 3 79 -311 1936 125 125 57 chr3 23555836 23556237 -203968341 - MSTA LTR MaLR 0 428 1 933 213 87 42 chr3 23556237 23556555 -203968023 + MLT1B LTR MaLR 79 358 -32 1518 171 16 85 chr3 23556557 23556645 -203967933 - MER2 DNA MER2_type -2 343 251 1626 140 29 59 chr3 23556645 23556779 -203967799 + AluJo SINE Alu 1 137 -175 2358 110 0 0 chr3 23556779 23557079 -203967499 + AluSx SINE Alu 1 300 -12 1626 140 29 59 chr3 23557079 23557251 -203967327 + AluJo SINE Alu 137 298 -14 1518 171 16 85 chr3 23557251 23557525 -203967053 - MER2 DNA MER2_type -94 251 6 246 114 0 0 chr3 23557529 23557564 -203967014 + MLT1B LTR MaLR 356 390 0 2265 55 0 24 chr3 23557616 23557930 -203966648 + AluY SINE Alu 7 311 0 330 26 0 0 chr3 23557952 23557991 -203966587 + (TG)n Simple_repeat Simple_repeat 1 39 0 777 174 90 110 chr3 23558015 23558314 -203966264 + L1MC5 LINE L1 7483 7767 -194 2189 114 62 0 chr3 23558314 23558666 -203965912 + L1MA5 LINE L1 5925 6298 -2 777 174 90 110 chr3 23558666 23558837 -203965741 + L1MC5 LINE L1 7767 7940 -21 549 304 89 57 chr3 23559003 23559560 -203965018 - L2 LINE L2 -3 3310 2713 588 264 158 29 chr3 23559768 23560202 -203964376 - MLT1G LTR MaLR 0 590 64 1969 210 114 62 chr3 23560333 23561010 -203963568 - MER50 LTR ERV1 -5 729 18 373 304 133 15 chr3 23562255 23562390 -203962188 + L2 LINE L2 3117 3267 -5 1095 190 33 5 chr3 23562411 23562595 -203961983 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 23562843 23562871 -203961707 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 23562897 23562926 -203961652 + AT_rich Low_complexity Low_complexity 1 29 0 264 271 12 35 chr3 23563804 23563889 -203960689 - Charlie8 DNA MER1_type -2309 108 26 2010 132 0 7 chr3 23564264 23564551 -203960027 + AluJb SINE Alu 3 287 -25 2289 96 7 0 chr3 23564809 23565102 -203959476 + AluSp SINE Alu 1 295 -18 2303 108 0 0 chr3 23565219 23565515 -203959063 + AluSg SINE Alu 1 296 -14 560 226 0 73 chr3 23565923 23566060 -203958518 - MIR SINE MIR -122 140 14 531 330 54 8 chr3 23566326 23566565 -203958013 + MIR SINE MIR 1 250 -12 1909 168 0 3 chr3 23566573 23566871 -203957707 + AluSx SINE Alu 1 297 -15 586 309 149 19 chr3 23566993 23567497 -203957081 - L2 LINE L2 0 3313 2722 214 286 65 13 chr3 23567497 23567574 -203957004 - L2 LINE L2 -719 2595 2515 226 293 300 20 chr3 23567747 23567897 -203956681 + MIR SINE MIR 45 236 -26 304 255 69 20 chr3 23568362 23568464 -203956114 - MIR SINE MIR 0 262 156 843 319 44 9 chr3 23568583 23569038 -203955540 + L1M4 LINE L1 4796 5266 -880 31 20 0 20 chr3 23569038 23569068 -203955510 + AT_rich Low_complexity Low_complexity 1 31 -17 2277 103 0 10 chr3 23569068 23569370 -203955208 - AluSx SINE Alu -13 299 1 31 20 0 20 chr3 23569370 23569388 -203955190 + AT_rich Low_complexity Low_complexity 31 48 0 6261 143 11 7 chr3 23569510 23571023 -203953555 - L1PA15 LINE L1 -21 6144 4631 567 256 83 119 chr3 23571860 23572449 -203952129 + MLT1K LTR MaLR 21 588 0 1632 198 0 0 chr3 23572689 23572962 -203951616 - AluJb SINE Alu -39 273 1 1515 200 72 9 chr3 23572962 23573282 -203951296 - MSTD LTR MaLR -56 340 1 276 340 7 42 chr3 23573899 23574043 -203950535 + MER91A DNA MER1_type 21 159 -37 258 95 0 0 chr3 23574275 23574317 -203950261 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 105 0 0 chr3 23574317 23574355 -203950223 + (GA)n Simple_repeat Simple_repeat 2 39 0 477 0 0 0 chr3 23574357 23574410 -203950168 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 460 212 288 49 chr3 23574536 23574800 -203949778 - MLT1H LTR MaLR -2 547 221 922 211 93 26 chr3 23575052 23575322 -203949256 - MER33 DNA MER1_type -35 289 2 489 287 22 7 chr3 23575350 23575486 -203949092 - MIR SINE MIR -123 139 2 216 213 21 0 chr3 23576080 23576127 -203948451 + L2 LINE L2 3225 3272 0 306 159 0 0 chr3 23576587 23576656 -203947922 + CT-rich Low_complexity Low_complexity 2 70 0 2353 69 14 0 chr3 23576849 23577139 -203947439 - AluY SINE Alu -17 294 1 27 49 0 0 chr3 23577298 23577339 -203947239 + AT_rich Low_complexity Low_complexity 1 41 0 5625 78 11 13 chr3 23577341 23578058 -203946520 - L1PB1 LINE L1 0 6151 5436 1921 220 7 2 chr3 23578066 23578511 -203946067 - L1PB1 LINE L1 -783 5363 4917 264 394 6 28 chr3 23579081 23579261 -203945317 - L2 LINE L2 -232 3040 2865 198 396 68 9 chr3 23579486 23579807 -203944771 - L2 LINE L2 -744 2570 2231 312 274 232 18 chr3 23579828 23579992 -203944586 + MLT1L LTR MaLR 42 240 -375 295 281 99 26 chr3 23580043 23580235 -203944343 + MLT1J LTR MaLR 217 422 -89 875 209 155 92 chr3 23580547 23581006 -203943572 - MLT1G1 LTR MaLR 0 595 108 3910 123 9 16 chr3 23581104 23581281 -203943297 + L1MB3 LINE L1 5607 5784 -399 1973 151 44 44 chr3 23581281 23581646 -203942932 - MLT1A1 LTR MaLR 0 365 1 3910 123 9 16 chr3 23581646 23582045 -203942533 + L1MB3 LINE L1 5784 6179 -4 23 33 0 0 chr3 23582045 23582075 -203942503 + AT_rich Low_complexity Low_complexity 1 30 0 2237 117 0 0 chr3 23582080 23582380 -203942198 - AluSx SINE Alu -12 300 1 24 0 0 0 chr3 23582401 23582425 -203942153 + AT_rich Low_complexity Low_complexity 1 24 0 608 241 163 0 chr3 23582482 23582623 -203941955 + MER5A DNA MER1_type 26 189 0 2237 219 68 11 chr3 23583101 23583675 -203940903 - L1ME3A LINE L1 0 6170 5564 9572 180 37 17 chr3 23584974 23586050 -203938528 - L1P4 LINE L1 -661 5505 4452 189 0 0 0 chr3 23586050 23586071 -203938507 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 9572 180 37 17 chr3 23586071 23587223 -203937355 - L1P4 LINE L1 -1714 4452 3240 1327 121 16 0 chr3 23587234 23587424 -203937154 + AluSq SINE Alu 113 305 -8 247 248 126 65 chr3 23587539 23587728 -203936850 + MLT1J LTR MaLR 3 175 -271 5966 138 33 13 chr3 23587737 23588290 -203936288 - L1MC1 LINE L1 -19 6314 5774 2420 127 30 22 chr3 23588290 23588651 -203935927 - THE1B LTR MaLR 0 364 1 12969 78 6 1 chr3 23588653 23590222 -203934356 - THE1B-int LTR MaLR -2 1578 1 2463 113 30 30 chr3 23590222 23590586 -203933992 - THE1B LTR MaLR 0 364 1 5966 138 33 13 chr3 23590586 23591015 -203933563 - L1MC1 LINE L1 -558 5775 5308 1113 183 0 0 chr3 23591016 23591202 -203933376 - AluJb SINE Alu -12 300 115 198 396 68 9 chr3 23591449 23591770 -203932808 - L2 LINE L2 -744 2570 2231 346 251 246 17 chr3 23591791 23591970 -203932608 + MLT1L LTR MaLR 42 261 -354 413 286 117 23 chr3 23592006 23592272 -203932306 + MLT1J LTR MaLR 219 509 -2 21 0 0 0 chr3 23593421 23593442 -203931136 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr3 23593712 23593741 -203930837 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 1180 114 5 22 chr3 23593756 23593940 -203930638 - AluSg/x SINE Alu 0 309 129 775 158 0 9 chr3 23594088 23594202 -203930376 - AluSq/x SINE Alu -199 114 2 2161 119 0 3 chr3 23594212 23594514 -203930064 - AluSc SINE Alu -8 301 1 232 247 82 41 chr3 23594534 23594631 -203929947 - L1ME LINE L1 -297 5873 5773 626 178 180 29 chr3 23594825 23595076 -203929502 - MLT1H1 LTR MaLR 0 555 279 282 225 25 100 chr3 23595212 23595332 -203929246 - MER103 DNA DNA -1 165 55 331 265 45 113 chr3 23595835 23596029 -203928549 - L1ME4a LINE L1 -115 6006 5855 1651 150 24 31 chr3 23596029 23596316 -203928262 + AluJo SINE Alu 11 295 -17 331 265 45 113 chr3 23596316 23596547 -203928031 - L1ME4a LINE L1 -266 5855 5610 259 353 12 0 chr3 23596749 23596834 -203927744 + L2 LINE L2 3102 3187 -85 458 244 282 24 chr3 23596859 23597146 -203927432 - L2 LINE L2 -4 3309 2949 1228 255 73 0 chr3 23597269 23597598 -203926980 - LTR16A LTR ERVL -9 441 89 280 154 39 0 chr3 23597600 23597652 -203926926 + LTR50 LTR ERVL 561 614 -181 606 262 99 44 chr3 23597862 23598156 -203926422 + LTR33A LTR ERVL 2 311 -212 385 284 103 4 chr3 23598175 23598539 -203926039 + LTR16A LTR ERVL 17 450 0 * 652 199 78 6 chr3 23598539 23598703 -203925875 + LTR33A LTR ERVL 320 495 -28 6610 159 14 3 chr3 23598704 23600451 -203924127 + L1P5 LINE L1 4020 5780 -371 1194 63 0 0 chr3 23600451 23600590 -203923988 + L1PB1 LINE L1 6009 6150 -1 229 214 0 0 chr3 23600594 23600636 -203923942 + LTR33A LTR ERVL 482 523 0 24 0 0 0 chr3 23600715 23600739 -203923839 + AT_rich Low_complexity Low_complexity 1 24 0 1051 209 0 0 chr3 23600765 23600942 -203923636 - MER8 DNA MER2_type -62 177 1 3112 157 70 67 chr3 23601005 23601617 -203922961 - LTR18B LTR ERVL 0 614 1 398 206 10 10 chr3 23601868 23601965 -203922613 + MER96 DNA MER1_type? 1 97 -78 823 92 92 46 chr3 23601995 23602126 -203922452 + FRAM SINE Alu 33 169 -7 1234 199 170 26 chr3 23602281 23602780 -203921798 - LTR50 LTR ERVL -104 691 30 322 215 21 43 chr3 23602779 23602872 -203921706 - MLT1E LTR MaLR -502 91 1 * 2229 102 0 3 chr3 23603620 23603913 -203920665 + AluSc SINE Alu 1 292 -17 341 90 0 90 chr3 23604110 23604177 -203920401 - MER53 DNA DNA 0 189 129 * 734 180 30 6 chr3 23604154 23604321 -203920257 + MER53 DNA DNA 7 177 -12 * 876 159 29 0 chr3 23604171 23604341 -203920237 - MER53 DNA DNA -12 177 3 496 152 0 0 chr3 23605602 23605681 -203918897 - Alu SINE Alu -9 301 223 202 315 82 55 chr3 23605708 23605854 -203918724 + L2 LINE L2 2943 3092 -180 2176 131 66 102 chr3 23606466 23606538 -203918040 - MSTB LTR MaLR 0 426 353 2056 121 4 4 chr3 23606538 23606819 -203917759 + AluSx SINE Alu 1 281 -31 2176 131 66 102 chr3 23606819 23607188 -203917390 - MSTB LTR MaLR -73 353 1 1631 214 98 109 chr3 23607669 23608488 -203916090 - Charlie2 DNA MER1_type -4 2858 2052 2075 129 7 0 chr3 23608488 23608782 -203915796 + AluSx SINE Alu 1 296 -16 1631 214 98 109 chr3 23608782 23608977 -203915601 - Charlie2 DNA MER1_type -810 2052 1856 1252 185 126 47 chr3 23609009 23609415 -203915163 - LTR56 LTR ERV1 0 445 8 971 190 84 18 chr3 23609419 23609645 -203914933 - Charlie2 DNA MER1_type -2465 317 77 443 181 53 0 chr3 23609691 23609785 -203914793 + MER5A DNA MER1_type 14 112 -77 181 288 163 0 chr3 23610685 23610765 -203913813 + MIR SINE MIR 100 192 -70 1275 138 11 5 chr3 23611208 23611396 -203913182 + MER5A DNA MER1_type 1 189 0 877 150 0 8 chr3 23611687 23611820 -203912758 + AluJo SINE Alu 5 136 -176 255 264 136 0 chr3 23612589 23612699 -203911879 - MIR3 SINE MIR -23 185 61 320 299 11 0 chr3 23612718 23612805 -203911773 - MIR3 SINE MIR -112 96 9 849 211 47 6 chr3 23612930 23613101 -203911477 + MER5B DNA MER1_type 1 178 0 2175 96 7 0 chr3 23613195 23613496 -203911082 - AluSp SINE Alu 0 303 1 287 259 0 0 chr3 23614126 23614180 -203910398 - L2 LINE L2 -10 3303 3250 524 131 12 36 chr3 23614903 23614987 -203909591 + FLAM_A SINE Alu 48 129 -13 2361 91 3 10 chr3 23614989 23615296 -203909282 + AluSx SINE Alu 1 305 -7 839 246 6 62 chr3 23615691 23615788 -203908790 + L1MC5 LINE L1 7611 7712 -249 1542 163 91 61 chr3 23615788 23616163 -203908415 + MLT1B LTR MaLR 1 386 -4 839 246 6 62 chr3 23616163 23616390 -203908188 + L1MC5 LINE L1 7712 7917 -44 22 0 0 0 chr3 23616523 23616545 -203908033 + AT_rich Low_complexity Low_complexity 1 22 0 586 271 83 48 chr3 23616635 23616864 -203907714 - MIR SINE MIR -6 256 20 1040 275 56 51 chr3 23617395 23617843 -203906735 + L2 LINE L2 2860 3309 -4 266 291 89 0 chr3 23617934 23618013 -203906565 - L2 LINE L2 -204 3068 2983 277 146 55 0 chr3 23618016 23618071 -203906507 + MLT1D LTR MaLR 1 58 -447 2313 123 27 30 chr3 23618082 23618435 -203906143 - THE1C LTR MaLR 0 375 22 6823 60 8 42 chr3 23618435 23619290 -203905288 - LTR12 LTR ERV1 0 826 1 2313 123 27 30 chr3 23619290 23619309 -203905269 - THE1C LTR MaLR -353 22 4 2043 178 31 60 chr3 23619309 23619753 -203904825 + MLT1D LTR MaLR 75 505 0 199 350 104 11 chr3 23619756 23619939 -203904639 - L2 LINE L2 -339 2975 2776 1410 277 40 3 chr3 23619990 23620369 -203904209 + LTR16A LTR ERVL 54 446 -4 244 301 86 0 chr3 23620456 23620549 -203904029 - L2 LINE L2 -644 2670 2570 3218 122 33 2 chr3 23620635 23621272 -203903306 + L1MA8 LINE L1 5111 5768 -523 13190 111 12 14 chr3 23621273 23622257 -203902321 + Tigger1 DNA MER2_type 486 1470 -948 2284 94 0 38 chr3 23622257 23622575 -203902003 + AluY SINE Alu 1 306 -5 13190 111 12 14 chr3 23622575 23623075 -203901503 + Tigger1 DNA MER2_type 1470 1969 -449 2293 102 7 0 chr3 23623075 23623378 -203901200 + AluY SINE Alu 1 305 -6 13190 111 12 14 chr3 23623378 23623704 -203900874 + Tigger1 DNA MER2_type 1969 2297 -121 354 45 0 0 chr3 23623704 23623748 -203900830 + (TA)n Simple_repeat Simple_repeat 1 44 0 13190 111 12 14 chr3 23623748 23623868 -203900710 + Tigger1 DNA MER2_type 2297 2416 -2 962 159 34 0 chr3 23623868 23624044 -203900534 + L1MA8 LINE L1 6106 6287 -4 353 227 151 41 chr3 23624218 23624319 -203900259 - L3 LINE CR1 -68 1509 1421 2855 99 11 8 chr3 23624319 23624691 -203899887 + THE1C LTR MaLR 1 373 -2 353 227 151 41 chr3 23624691 23624761 -203899817 - L3 LINE CR1 -156 1421 1319 540 300 111 37 chr3 23624773 23624949 -203899629 + MIR SINE MIR 2 164 -98 2464 51 7 3 chr3 23624949 23625245 -203899333 + AluY SINE Alu 1 297 -14 2288 108 3 0 chr3 23625251 23625548 -203899030 + AluSg SINE Alu 1 298 -12 540 300 111 37 chr3 23625548 23625607 -203898971 + MIR SINE MIR 168 262 0 789 212 58 32 chr3 23626517 23626706 -203897872 + MER63B DNA MER1_type 1 194 -242 207 88 29 0 chr3 23626721 23626755 -203897823 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 269 200 292 0 chr3 23626758 23626823 -203897755 - L2 LINE L2 -1 3271 3188 2339 244 66 47 chr3 23626930 23627721 -203896857 + L2 LINE L2 1925 2730 -584 2332 69 0 44 chr3 23627827 23628146 -203896432 - AluY SINE Alu -6 305 1 449 113 21 124 chr3 23628358 23628394 -203896184 - L1ME1 LINE L1 -8 6158 6120 1620 173 95 0 chr3 23628394 23628678 -203895900 - AluJb SINE Alu -1 311 1 449 113 21 124 chr3 23628678 23628738 -203895840 - L1ME1 LINE L1 -46 6120 6072 3524 107 95 38 chr3 23628885 23629427 -203895151 + LTR24C LTR ERV1 1 582 -53 1881 139 0 7 chr3 23629427 23629700 -203894878 - AluSx SINE Alu -21 291 21 3524 107 95 38 chr3 23629700 23629756 -203894822 + LTR24C LTR ERV1 582 633 -2 1728 186 34 33 chr3 23629759 23630176 -203894402 + MLT2B1 LTR ERVL 1 414 0 45 79 0 0 chr3 23630553 23630654 -203893924 + AT_rich Low_complexity Low_complexity 1 101 0 265 282 154 18 chr3 23630730 23630840 -203893738 + MIR3 SINE MIR 3 127 -81 459 302 121 0 chr3 23630841 23630990 -203893588 - MER96 DNA MER1_type? -3 172 6 275 303 13 0 chr3 23630995 23631071 -203893507 + MIR3 SINE MIR 120 196 -12 22 0 0 0 chr3 23631462 23631484 -203893094 + AT_rich Low_complexity Low_complexity 1 22 0 1816 171 53 11 chr3 23631511 23631867 -203892711 - MER63 DNA MER1_type 0 1061 691 2462 195 14 12 chr3 23632334 23632995 -203891583 - L1MCa LINE L1 -917 5509 4737 1845 138 26 59 chr3 23633023 23633480 -203891098 + Tigger5 DNA MER2_type 8 2323 0 5102 241 82 59 chr3 23633480 23634557 -203890021 - L1MCa LINE L1 -1710 4716 3665 1591 174 89 0 chr3 23634557 23634839 -203889739 - AluJo SINE Alu -5 307 1 5102 241 82 59 chr3 23634839 23635663 -203888915 - L1MCa LINE L1 -2761 3665 2861 2224 97 0 32 chr3 23635663 23635972 -203888606 - AluY SINE Alu -12 299 1 5102 241 82 59 chr3 23635972 23636962 -203887616 - L1MCa LINE L1 -3565 2861 1895 189 0 0 0 chr3 23636962 23636983 -203887595 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5102 241 82 59 chr3 23636983 23638189 -203886389 - L1MCa LINE L1 -4531 1895 456 5240 57 3 13 chr3 23638189 23638824 -203885754 - SVA Other Other 0 1386 758 5102 241 82 59 chr3 23638824 23639248 -203885330 - L1MCa LINE L1 -5970 456 43 509 250 6 76 chr3 23639385 23639557 -203885021 + MLT1J1 LTR MaLR 284 443 -3 283 241 34 24 chr3 23639859 23639960 -203884618 - MLT1J LTR MaLR -13 602 398 246 253 98 98 chr3 23640031 23640256 -203884322 - MLT1L LTR MaLR -221 394 170 959 245 91 60 chr3 23641177 23641528 -203883050 + LTR16C LTR ERVL 70 431 -60 307 209 15 0 chr3 23641740 23641807 -203882771 + LTR16C LTR ERVL 420 487 -4 201 108 0 0 chr3 23641848 23641885 -203882693 + (T)n Simple_repeat Simple_repeat 1 37 0 2156 111 62 108 chr3 23642240 23642710 -203881868 + LTR7 LTR ERV1 1 448 -2 2890 153 40 9 chr3 23642887 23643338 -203881240 - MLT1C LTR MaLR -2 465 1 749 283 22 5 chr3 23643353 23643537 -203881041 + MIR SINE MIR 3 189 -73 1679 153 3 28 chr3 23644286 23644592 -203879986 + AluJo SINE Alu 10 308 0 300 247 95 71 chr3 23645462 23645633 -203878945 - MLT1H LTR MaLR -13 536 439 219 267 30 8 chr3 23645825 23645956 -203878622 + (TA)n Simple_repeat Simple_repeat 2 135 0 4025 186 50 39 chr3 23646962 23647855 -203876723 - L1MB7 LINE L1 -8 6674 5455 2091 121 51 75 chr3 23647855 23648030 -203876548 - THE1B LTR MaLR 0 364 186 2265 121 0 3 chr3 23648030 23648344 -203876234 + AluSq SINE Alu 1 313 0 2091 121 51 75 chr3 23648344 23648541 -203876037 - THE1B LTR MaLR -178 186 1 4025 186 50 39 chr3 23648541 23648794 -203875784 - L1MB7 LINE L1 -1227 5455 5206 1548 218 32 50 chr3 23648799 23649176 -203875402 - L1MB7 LINE L1 -6156 386 17 869 230 22 92 chr3 23649758 23649930 -203874648 + MLT1H LTR MaLR 12 154 -395 2365 201 18 83 chr3 23649930 23650483 -203874095 - LTR40a LTR ERVL -2 517 1 869 230 22 92 chr3 23650483 23650627 -203873951 + MLT1H LTR MaLR 154 306 -243 2101 125 0 22 chr3 23650881 23651200 -203873378 + AluSx SINE Alu 1 312 0 1432 181 14 55 chr3 23651211 23651339 -203873239 + AluJo SINE Alu 1 133 -179 5905 114 39 2 chr3 23651339 23653176 -203871402 + L1PA16 LINE L1 4303 6156 -10 183 80 0 0 chr3 23653182 23653207 -203871371 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1432 181 14 55 chr3 23653207 23653364 -203871214 + AluJo SINE Alu 138 281 -31 324 0 0 0 chr3 23653368 23653404 -203871174 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 861 188 0 0 chr3 23653989 23654122 -203870456 + FLAM_A SINE Alu 1 133 0 392 180 0 11 chr3 23654122 23654211 -203870367 + GA-rich Low_complexity Low_complexity 3 90 0 660 252 20 2 chr3 23654393 23654593 -203869985 + L1ME3A LINE L1 5768 5973 -197 248 250 94 10 chr3 23655318 23655414 -203869164 - L1ME LINE L1 -319 5802 5699 1727 165 10 3 chr3 23655557 23655848 -203868730 - L1MC1 LINE L1 -1 6332 6040 1140 179 13 79 chr3 23655848 23656166 -203868412 - L1ME LINE L1 -1012 5134 4838 536 252 14 7 chr3 23656365 23656508 -203868070 + MIR SINE MIR 119 262 0 2172 136 3 3 chr3 23657169 23657479 -203867099 - AluSx SINE Alu -2 310 1 1935 171 90 84 chr3 23657600 23658145 -203866433 - LTR10A LTR ERV1 -61 548 1 27678 218 15 25 chr3 23658145 23665510 -203859068 - LTR10A-int LTR ERV1 0 6649 501 546 255 71 64 chr3 23665568 23665850 -203858728 - LTR10A-int LTR ERV1 -6360 289 6 1763 182 162 43 chr3 23665850 23666339 -203858239 - LTR10A LTR ERV1 -62 547 1 966 82 0 70 chr3 23667158 23667316 -203857262 - L1PA15 LINE L1 -5 6160 6014 3573 190 90 11 chr3 23667329 23668143 -203856435 - MER63C DNA MER1_type 0 930 53 201 331 66 16 chr3 23668313 23668434 -203856144 + L2 LINE L2 3182 3308 -5 1218 259 51 45 chr3 23669350 23669422 -203855156 + L2 LINE L2 2586 2656 -657 2182 88 20 39 chr3 23669422 23669727 -203854851 - AluSg SINE Alu -11 299 1 1218 259 51 45 chr3 23669727 23670374 -203854204 + L2 LINE L2 2656 3308 -5 627 227 220 86 chr3 23671051 23671538 -203853040 - MLT1H1 LTR MaLR 0 548 1 1914 321 62 47 chr3 23672012 23673565 -203851013 + HERV16 LTR ERVL 3134 5008 -477 898 315 74 30 chr3 23673993 23674465 -203850113 + LTR16B LTR ERVL 1 464 0 559 268 13 19 chr3 23674546 23674703 -203849875 + L1ME3A LINE L1 5503 5658 -512 1782 178 68 11 chr3 23674722 23675076 -203849502 + MLT1A2 LTR MaLR 1 374 0 2446 140 69 9 chr3 23675093 23675514 -203849064 - Tigger2 DNA MER2_type 0 2718 2273 254 217 150 0 chr3 23675501 23675561 -203849017 - Tigger2 DNA MER2_type -2648 70 2 * 1619 223 45 19 chr3 23675561 23675999 -203848579 + L1ME3A LINE L1 5717 6165 -5 371 252 93 29 chr3 23676062 23676201 -203848377 + HsTC2 DNA Tc2 1 148 -1750 243 182 0 73 chr3 23676202 23676257 -203848321 + HsTC2 DNA Tc2 1281 1331 -567 1347 215 34 20 chr3 23676264 23676613 -203847965 - HsTC2 DNA Tc2 -101 1797 1444 1554 260 67 33 chr3 23676629 23677048 -203847530 + LTR16A LTR ERVL 18 450 0 629 211 105 23 chr3 23677048 23677219 -203847359 - HsTC2 DNA Tc2 -449 1449 1265 314 198 20 69 chr3 23677226 23677327 -203847251 - HsTC2 DNA Tc2 -66 1832 19 253 242 0 30 chr3 23678103 23678169 -203846409 + CT-rich Low_complexity Low_complexity 6 69 0 509 315 96 44 chr3 23678344 23679085 -203845493 + L1MC4a LINE L1 2701 3486 -2660 252 301 142 43 chr3 23679112 23679394 -203845184 + L1P LINE L1 3526 3835 -2311 705 270 54 35 chr3 23679403 23679718 -203844860 + L1MC4a LINE L1 5523 5843 -1965 369 111 16 0 chr3 23679981 23680044 -203844534 - L1PA16 LINE L1 0 6166 6103 13379 235 34 19 chr3 23680145 23683254 -203841324 - L1PA13 LINE L1 -1522 5275 1575 2181 134 0 0 chr3 23683254 23683553 -203841025 - AluSq SINE Alu -14 299 1 13379 235 34 19 chr3 23683553 23685150 -203839428 - L1PA13 LINE L1 -5222 1575 2 396 0 0 0 chr3 23685596 23685640 -203838938 + (GA)n Simple_repeat Simple_repeat 2 45 0 559 278 42 47 chr3 23685741 23685953 -203838625 - MIR SINE MIR -21 241 31 23 0 0 0 chr3 23686022 23686045 -203838533 + AT_rich Low_complexity Low_complexity 1 23 0 2275 83 0 0 chr3 23686051 23686328 -203838250 + AluSg SINE Alu 1 277 -33 2039 210 24 7 chr3 23686807 23687230 -203837348 - MER63B DNA MER1_type -1 435 6 2105 227 100 27 chr3 23687371 23688066 -203836512 + Charlie7 DNA MER1_type 1660 2415 -197 875 178 33 11 chr3 23688066 23688246 -203836332 - L1PA16 LINE L1 -14 6152 5969 2105 227 100 27 chr3 23688246 23688299 -203836279 + Charlie7 DNA MER1_type 2415 2463 -149 433 217 0 0 chr3 23688299 23688382 -203836196 + MER5A DNA MER1_type 12 94 -95 231 222 74 0 chr3 23688666 23688720 -203835858 - MIR SINE MIR 0 262 205 266 237 17 0 chr3 23688729 23688788 -203835790 - MIR SINE MIR -201 61 2 237 237 10 62 chr3 23688793 23688890 -203835688 + Charlie7 DNA MER1_type 2516 2607 -5 191 258 240 73 chr3 23689071 23689346 -203835232 + L2 LINE L2 2991 3311 -2 253 368 8 8 chr3 23689621 23689738 -203834840 + MIR SINE MIR 29 145 -63 1859 137 25 11 chr3 23690225 23690510 -203834068 - AluJo SINE Alu -21 291 3 29 47 0 0 chr3 23690514 23690557 -203834021 + AT_rich Low_complexity Low_complexity 1 43 0 201 176 0 0 chr3 23690616 23690650 -203833928 + A-rich Low_complexity Low_complexity 1 34 0 2058 103 4 0 chr3 23690687 23690950 -203833628 - AluSx SINE Alu -21 291 28 339 315 63 0 chr3 23692267 23692394 -203832184 + L3b LINE CR1 1361 1495 -88 1036 304 59 17 chr3 23694099 23694560 -203830018 - L2 LINE L2 -2 3311 2832 908 239 167 61 chr3 23695289 23695732 -203828846 + MLT1G1 LTR MaLR 60 588 -6 712 324 81 29 chr3 23696702 23697247 -203827331 + L2 LINE L2 2694 3272 0 240 227 164 27 chr3 23697517 23697627 -203826951 - L2 LINE L2 -2 3311 3187 2644 33 7 0 chr3 23698020 23698321 -203826257 - AluY SINE Alu -8 303 1 337 273 148 68 chr3 23698697 23698975 -203825603 + MLT1H LTR MaLR 13 312 -237 379 198 51 3 chr3 23699051 23699158 -203825420 + MLT1H LTR MaLR 281 549 0 261 296 111 0 chr3 23699190 23699271 -203825307 - MIR SINE MIR -160 102 13 595 221 123 0 chr3 23699595 23699749 -203824829 + MIR SINE MIR 66 238 -24 1061 270 83 62 chr3 23699831 23700480 -203824098 + MLT2F LTR ERVL 1 663 0 210 71 0 0 chr3 23701432 23701460 -203823118 + (A)n Simple_repeat Simple_repeat 1 28 0 585 257 26 2 chr3 23701778 23701943 -203822635 + L1ME3A LINE L1 5640 5811 -379 2110 179 57 18 chr3 23701959 23702400 -203822178 - MLT1C LTR MaLR 0 467 10 501 269 58 6 chr3 23702408 23702579 -203821999 + L1ME3A LINE L1 5798 5977 -193 393 231 213 0 chr3 23702638 23702798 -203821780 + L1ME3A LINE L1 5962 6155 -15 423 180 129 43 chr3 23702802 23702941 -203821637 + MIR3 SINE MIR 23 173 -35 504 339 23 14 chr3 23703046 23703267 -203821311 + MIR SINE MIR 21 243 -19 2054 85 59 7 chr3 23703826 23704097 -203820481 + AluSp SINE Alu 1 285 -28 2335 88 3 10 chr3 23704628 23704933 -203819645 + AluSx SINE Alu 1 303 -9 345 314 111 5 chr3 23705545 23705755 -203818823 - MIR SINE MIR -6 256 18 193 211 105 0 chr3 23705771 23705828 -203818750 + L2 LINE L2 3209 3271 -1 590 301 5 16 chr3 23706783 23706893 -203817685 - MIR SINE MIR -2 260 151 1167 203 106 31 chr3 23706893 23707213 -203817365 + MER2 DNA MER2_type 1 344 0 590 301 5 16 chr3 23707213 23707295 -203817283 - MIR SINE MIR -111 151 70 388 200 42 42 chr3 23707382 23707502 -203817076 - MLT1L LTR MaLR 0 615 496 379 224 37 82 chr3 23707655 23707759 -203816819 - MLT1L LTR MaLR -337 278 180 1871 160 80 35 chr3 23707759 23708134 -203816444 + MSTD LTR MaLR 1 392 -4 379 224 37 82 chr3 23708134 23708163 -203816415 - MLT1L LTR MaLR -435 180 151 358 213 37 56 chr3 23708252 23708360 -203816218 + MIR SINE MIR 98 203 -59 1488 244 98 12 chr3 23708672 23709090 -203815488 - LTR16A1 LTR ERVL -1 456 3 307 221 0 15 chr3 23709104 23709172 -203815406 + LTR67 LTR ERVL 491 557 0 22 0 0 0 chr3 23709608 23709630 -203814948 + AT_rich Low_complexity Low_complexity 1 22 0 382 315 31 0 chr3 23710712 23710842 -203813736 + MIR SINE MIR 92 225 -37 358 254 46 46 chr3 23711801 23711931 -203812647 - MER94 DNA DNA -1 133 4 308 130 0 0 chr3 23711931 23711977 -203812601 - LTR16C LTR ERVL 0 491 446 6889 141 23 5 chr3 23712040 23712534 -203812044 + Tigger3b DNA MER2_type 110 594 -2434 2002 116 48 61 chr3 23712534 23712912 -203811666 - THE1C LTR MaLR -2 373 1 6889 141 23 5 chr3 23712912 23713519 -203811059 + Tigger3b DNA MER2_type 594 1231 0 1111 289 79 38 chr3 23713519 23713937 -203810641 - LTR16C LTR ERVL -56 435 1 5984 87 33 0 chr3 23714533 23715371 -203809207 + L1PA13 LINE L1 5284 6149 -14 328 251 66 71 chr3 23715490 23715673 -203808905 - MLT1K LTR MaLR -5 583 402 259 274 50 37 chr3 23716398 23716557 -203808021 + MIR SINE MIR 19 183 -64 700 278 117 40 chr3 23717255 23717579 -203806999 - MLT1J2 LTR MaLR 0 450 102 6280 79 38 0 chr3 23717682 23718478 -203806100 + LTR12 LTR ERV1 1 826 0 437 256 89 1 chr3 23718485 23718612 -203805966 - MIR SINE MIR -67 141 6 1187 269 153 56 chr3 23719287 23719848 -203804730 - MLT1G1 LTR MaLR -2 588 1 450 290 55 0 chr3 23719925 23720070 -203804508 - MIR SINE MIR -64 198 46 2177 105 14 24 chr3 23720522 23720843 -203803735 - AluSg SINE Alu 0 310 1 255 188 21 0 chr3 23720844 23720892 -203803686 + MER94 DNA DNA 27 75 -59 577 190 9 9 chr3 23720909 23721025 -203803553 + L1ME3 LINE L1 6039 6154 -8 344 243 0 0 chr3 23721050 23721124 -203803454 + MER94 DNA DNA 61 134 0 2323 112 18 68 chr3 23721364 23721747 -203802831 - THE1B LTR MaLR 0 364 1 7524 91 243 37 chr3 23721747 23723057 -203801521 - THE1B-int LTR MaLR 0 1580 1 1221 121 25 3 chr3 23723057 23723336 -203801242 - THE1B LTR MaLR 0 364 2 214 290 0 14 chr3 23723339 23723408 -203801170 + (TGG)n Simple_repeat Simple_repeat 3 70 0 912 198 6 0 chr3 23723422 23723579 -203800999 - FRAM SINE Alu -22 154 1 250 155 10 52 chr3 23723649 23723746 -203800832 + (TGG)n Simple_repeat Simple_repeat 2 94 0 291 153 24 12 chr3 23723807 23723892 -203800686 + (TGG)n Simple_repeat Simple_repeat 3 88 0 351 305 23 15 chr3 23724444 23724575 -203800003 - MIR SINE MIR -23 239 108 1834 158 13 13 chr3 23724721 23725032 -203799546 - AluJb SINE Alu -1 311 1 6276 94 36 0 chr3 23725038 23726135 -203798443 - L1PA13 LINE L1 0 6163 5054 194 203 186 0 chr3 23727820 23727879 -203796699 - L2 LINE L2 0 3272 3203 262 189 19 0 chr3 23727904 23727957 -203796621 - MIR SINE MIR -101 161 108 187 311 39 39 chr3 23727983 23728086 -203796492 - L2 LINE L2 -93 3220 3118 1439 314 126 34 chr3 23728428 23729726 -203794852 - L2 LINE L2 -1764 1550 133 214 333 35 0 chr3 23731118 23731205 -203793373 - MIR SINE MIR -71 191 102 358 125 11 91 chr3 23781298 23781386 -203743192 + LTR37B LTR ERV1 384 464 -4 2369 92 0 0 chr3 23781562 23781865 -203742713 + AluSx SINE Alu 1 303 -9 259 270 96 6 chr3 23781879 23782057 -203742521 + L1ME LINE L1 5704 5897 -224 1766 181 23 20 chr3 23782868 23783217 -203741361 + MLT1B LTR MaLR 41 390 0 564 291 24 6 chr3 23783709 23783874 -203740704 - MIR3 SINE MIR -9 199 32 1351 172 66 3 chr3 23783968 23784270 -203740308 - MER33 DNA MER1_type -2 322 2 603 218 93 79 chr3 23784549 23784765 -203739813 + MIR SINE MIR 23 241 -21 605 182 56 5 chr3 23785029 23785169 -203739409 - MLT1G LTR MaLR -1 571 429 265 316 20 10 chr3 23785185 23785283 -203739295 - MIR SINE MIR -161 101 3 1061 242 35 38 chr3 23785290 23785374 -203739204 + MER46C DNA MER2_type 1 84 -254 2014 152 0 13 chr3 23785374 23785683 -203738895 + AluSx SINE Alu 1 305 -7 1061 242 35 38 chr3 23785683 23785937 -203738641 + MER46C DNA MER2_type 84 338 0 413 299 53 0 chr3 23785941 23786128 -203738450 - MIR SINE MIR -7 255 59 1351 191 98 9 chr3 23787349 23787790 -203736788 - MER119 DNA MER1_type 0 583 6 2456 77 7 0 chr3 23789012 23789311 -203735267 + AluY SINE Alu 1 301 -10 430 284 194 10 chr3 23790142 23790343 -203734235 + MIR SINE MIR 4 241 -21 214 309 108 14 chr3 23791195 23791334 -203733244 - MIR3 SINE MIR -55 153 2 2277 110 7 0 chr3 23791468 23791767 -203732811 + AluSc SINE Alu 1 301 -8 310 333 8 8 chr3 23791804 23791930 -203732648 + L2 LINE L2 3187 3312 -1 4083 153 20 25 chr3 23791981 23792124 -203732454 - MER50 LTR ERV1 -23 711 569 1473 148 0 4 chr3 23792124 23792353 -203732225 + AluJb SINE Alu 71 298 -14 4083 153 20 25 chr3 23792353 23792916 -203731662 - MER50 LTR ERV1 -165 569 9 525 212 27 94 chr3 23794414 23794716 -203729862 - MLT1H LTR MaLR -56 493 172 2600 183 118 11 chr3 23794725 23795266 -203729312 - MER77 LTR ERV1 -6 599 1 326 213 220 21 chr3 23795266 23795402 -203729176 - MLT1H LTR MaLR -373 176 13 537 146 9 27 chr3 23796789 23796899 -203727679 - L1MA3 LINE L1 0 6305 6198 446 224 170 20 chr3 23797233 23797380 -203727198 - MER5A DNA MER1_type -1 188 20 290 188 47 16 chr3 23797409 23797473 -203727105 - MER5B DNA MER1_type 0 178 113 887 182 62 0 chr3 23797506 23797682 -203726896 + MER5A DNA MER1_type 3 189 0 289 230 10 100 chr3 23797692 23797792 -203726786 + L1MC4 LINE L1 7413 7503 -539 201 138 0 0 chr3 23797924 23797953 -203726625 + (TG)n Simple_repeat Simple_repeat 2 30 0 245 330 36 0 chr3 23798035 23798147 -203726431 + MER5A DNA MER1_type 8 123 -66 738 244 45 98 chr3 23798222 23798578 -203726000 - MER102b DNA MER1_type -4 337 1 258 298 29 10 chr3 23799078 23799182 -203725396 + MIR SINE MIR 41 146 -62 2272 99 0 7 chr3 23799842 23800144 -203724434 + AluSc SINE Alu 1 300 -9 507 241 30 0 chr3 23800347 23800480 -203724098 + L1MC5 LINE L1 7789 7925 -36 1137 125 12 0 chr3 23801155 23801315 -203723263 + AluSg/x SINE Alu 138 299 -13 452 301 0 14 chr3 23801757 23801903 -203722675 - MIR3 SINE MIR -9 199 56 379 206 69 29 chr3 23802174 23802276 -203722302 - MER67A LTR ERV1 0 543 438 352 331 15 8 chr3 23802302 23802435 -203722143 - L2 LINE L2 -5 3267 3134 1673 267 117 9 chr3 23802505 23803037 -203721541 - MLT1G1 LTR MaLR 0 595 7 189 255 124 87 chr3 23803083 23803244 -203721334 - L2 LINE L2 -237 3035 2869 1193 218 102 95 chr3 23803371 23803883 -203720695 - MLT1G LTR MaLR -7 583 65 2163 100 14 3 chr3 23803883 23804172 -203720406 - AluSq SINE Alu -21 292 1 1193 218 102 95 chr3 23804172 23804229 -203720349 - MLT1G LTR MaLR -525 65 10 517 256 7 29 chr3 23804239 23804376 -203720202 + MER94 DNA DNA 1 134 0 378 239 0 62 chr3 23805624 23805637 -203718941 + MER81 DNA DNA 1 13 -101 1578 186 40 45 chr3 23805637 23805803 -203718775 + MLT1A2 LTR MaLR 1 166 -208 249 33 0 0 chr3 23805803 23805833 -203718745 + (TC)n Simple_repeat Simple_repeat 1 30 0 1578 186 40 45 chr3 23805833 23806042 -203718536 + MLT1A2 LTR MaLR 166 374 0 378 239 0 62 chr3 23806042 23806141 -203718437 + MER81 DNA DNA 13 106 -8 232 153 85 0 chr3 23806756 23806815 -203717763 + LTR37B LTR ERV1 5 68 -400 2461 82 0 0 chr3 23806944 23807248 -203717330 - AluY SINE Alu -7 304 1 390 225 0 0 chr3 23807313 23807393 -203717185 + LTR37B LTR ERV1 200 279 -189 484 299 97 9 chr3 23807494 23807711 -203716867 - L1ME LINE L1 -430 5740 5505 326 292 77 15 chr3 23807744 23807939 -203716639 - L1ME LINE L1 -1306 4840 4634 1791 159 37 57 chr3 23807945 23808328 -203716250 - THE1C LTR MaLR 0 375 1 308 253 163 0 chr3 23808378 23808544 -203716034 - L1ME LINE L1 -1562 4584 4392 * 718 342 48 12 chr3 23808542 23808957 -203715621 + L1MC4a LINE L1 5434 5863 -1945 * 735 220 12 0 chr3 23808955 23809128 -203715450 - L1ME LINE L1 -3009 3137 2963 * 28003 61 6 2 chr3 23809125 23815250 -203709328 - L1PA6 LINE L1 0 6154 3 1268 232 13 3 chr3 23815251 23815566 -203709012 - L1ME LINE L1 -3169 2977 2660 220 256 0 0 chr3 23815763 23815806 -203708772 + polypyrimidine Low_complexity Low_complexity 1 43 0 368 290 11 0 chr3 23816484 23816577 -203708001 + L2 LINE L2 3178 3271 -1 288 137 0 0 chr3 23816824 23816875 -203707703 + (CA)n Simple_repeat Simple_repeat 1 51 0 833 274 52 110 chr3 23818204 23818649 -203705929 - LTR16C LTR ERVL 0 491 73 453 288 18 0 chr3 23819552 23819663 -203704915 - MER5A DNA MER1_type -5 184 72 2372 108 33 28 chr3 23819687 23820047 -203704531 + THE1B LTR MaLR 1 362 -2 196 278 139 14 chr3 23820450 23820522 -203704056 - L2 LINE L2 -2 3270 3190 2571 155 19 19 chr3 23820573 23821005 -203703573 - MSTB1 LTR MaLR 0 432 1 189 207 230 35 chr3 23822260 23822347 -203702231 + L2 LINE L2 3199 3302 -11 2015 188 30 37 chr3 23822349 23822592 -203701986 + L1ME2 LINE L1 5727 5970 -194 1115 201 52 101 chr3 23822592 23822746 -203701832 + MLT1A2 LTR MaLR 4 164 -210 2076 105 0 3 chr3 23822746 23823057 -203701521 + AluSc SINE Alu 1 309 0 1115 201 52 101 chr3 23823057 23823290 -203701288 + MLT1A2 LTR MaLR 164 372 -2 2015 188 30 37 chr3 23823290 23823302 -203701276 + L1ME2 LINE L1 5970 5981 -183 1688 153 28 92 chr3 23823302 23823702 -203700876 - MLT1A2 LTR MaLR 0 374 1 2015 188 30 37 chr3 23823702 23823877 -203700701 + L1ME2 LINE L1 5981 6155 -9 383 297 18 9 chr3 23824689 23824800 -203699778 - MER117 DNA MER1_type -1 196 85 * 1886 183 67 31 chr3 23824797 23825148 -203699430 - MER63B DNA MER1_type -626 436 66 3259 95 44 23 chr3 23825148 23825630 -203698948 - LTR22B LTR ERVK 0 492 1 1886 183 67 31 chr3 23825630 23825699 -203698879 - MER63B DNA MER1_type -996 66 1 324 190 0 35 chr3 23825895 23825953 -203698625 + MER91 DNA MER1_type 141 196 0 837 200 53 6 chr3 23826683 23826853 -203697725 - MER45A DNA AcHobo 0 178 1 180 97 0 0 chr3 23827320 23827351 -203697227 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 484 216 108 0 chr3 23827365 23827467 -203697111 - MER81 DNA DNA -1 113 1 257 178 0 0 chr3 23827753 23827798 -203696780 + MER5B DNA MER1_type 1 45 -133 569 274 0 0 chr3 23828028 23828145 -203696433 - FLAM_A SINE Alu -14 128 12 446 281 111 7 chr3 23829334 23829469 -203695109 - MIR3 SINE MIR -10 198 50 243 261 0 0 chr3 23830636 23830682 -203693896 + L2 LINE L2 3247 3292 -21 258 301 14 0 chr3 23830704 23830777 -203693801 + L2 LINE L2 3240 3313 0 232 337 39 67 chr3 23830829 23831007 -203693571 - L3 LINE CR1 -93 1484 1312 2372 31 41 0 chr3 23831033 23831327 -203693251 - AluY SINE Alu -5 306 1 411 232 12 0 chr3 23831623 23831705 -203692873 + MLT2F LTR ERVL 5 87 -576 2223 108 156 3 chr3 23832167 23832538 -203692040 + MSTA LTR MaLR 1 428 0 2121 243 24 11 chr3 23832609 23833035 -203691543 + MLT2F LTR ERVL 186 620 -43 933 7 50 14 chr3 23833035 23833176 -203691402 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 2121 243 24 11 chr3 23833176 23833214 -203691364 + MLT2F LTR ERVL 620 656 -7 1227 235 48 24 chr3 23833753 23834085 -203690493 + MER102b DNA MER1_type 2 341 0 1254 268 93 15 chr3 23834096 23834506 -203690072 + LTR16C LTR ERVL 1 442 -49 3325 227 3 3 chr3 23834528 23835166 -203689412 + MER82 DNA MER2_type 16 653 0 2179 185 29 14 chr3 23835267 23836295 -203688283 + L1MEc LINE L1 91 1180 -5216 2463 63 0 0 chr3 23836571 23836871 -203687707 + AluY SINE Alu 1 300 -11 1579 177 75 0 chr3 23836877 23836994 -203687584 - L1MA9 LINE L1 -22 6290 6183 231 114 0 0 chr3 23836994 23837029 -203687549 + (TG)n Simple_repeat Simple_repeat 2 36 0 1579 177 75 0 chr3 23837029 23837245 -203687333 - L1MA9 LINE L1 -129 6183 5932 715 197 0 0 chr3 23837468 23837590 -203686988 - FLAM_C SINE Alu -18 125 4 1065 189 41 49 chr3 23837672 23837915 -203686663 - MSTD LTR MaLR 0 396 156 1057 227 54 14 chr3 23838022 23838300 -203686278 - MLT1C LTR MaLR -178 289 1 527 327 63 15 chr3 23838445 23838714 -203685864 - L2 LINE L2 -61 3252 2971 241 314 114 29 chr3 23838719 23838859 -203685719 - L2 LINE L2 -308 3005 2854 2339 273 103 23 chr3 23839413 23840529 -203684049 + L2 LINE L2 2103 3312 -1 193 286 13 39 chr3 23840624 23840701 -203683877 - MIR3 SINE MIR -30 178 104 757 189 25 44 chr3 23842135 23842294 -203682284 + MER5A DNA MER1_type 2 157 -32 572 276 78 58 chr3 23842524 23842767 -203681811 - MIR SINE MIR -11 251 4 428 232 101 0 chr3 23843182 23843281 -203681297 + MER96 DNA MER1_type? 55 163 -12 217 338 13 13 chr3 23843436 23843513 -203681065 + L2 LINE L2 3122 3198 -74 266 276 49 18 chr3 23843677 23843840 -203680738 + (TG)n Simple_repeat Simple_repeat 2 169 0 356 218 34 50 chr3 23844269 23844448 -203680130 + (TG)n Simple_repeat Simple_repeat 2 177 0 236 231 9 56 chr3 23844428 23844536 -203680042 + (TATG)n Simple_repeat Simple_repeat 3 105 0 * 327 233 31 43 chr3 23844482 23844645 -203679933 + (TG)n Simple_repeat Simple_repeat 1 161 0 472 204 9 37 chr3 23844674 23844782 -203679796 - MER81 DNA DNA -1 113 9 626 262 228 5 chr3 23845484 23845716 -203678862 - MIR SINE MIR 0 262 1 341 361 65 34 chr3 23845769 23846059 -203678519 + L1ME2 LINE L1 5654 5956 -206 790 186 40 40 chr3 23846413 23846590 -203677988 - MER5A DNA MER1_type -12 177 1 376 312 159 25 chr3 23846630 23846787 -203677791 - MER5A DNA MER1_type 0 189 12 225 329 128 34 chr3 23846813 23846962 -203677616 - MER5A DNA MER1_type -6 183 21 650 177 88 7 chr3 23847217 23847364 -203677214 + MIR SINE MIR 47 205 -57 184 247 169 22 chr3 23847504 23847593 -203676985 + L3b LINE CR1 1378 1479 -104 * 709 262 14 0 chr3 23847547 23847688 -203676890 - MER5B DNA MER1_type -21 157 15 408 238 322 7 chr3 23848472 23848615 -203675963 + MER5A DNA MER1_type 1 188 -1 288 265 309 0 chr3 23848622 23848758 -203675820 + MER5B DNA MER1_type 1 178 0 531 172 2 2 chr3 23849034 23849135 -203675443 + MER5A DNA MER1_type 9 98 -80 365 266 6 79 chr3 23850734 23850911 -203673667 + L2 LINE L2 2883 3046 -226 884 249 151 53 chr3 23850977 23851414 -203673164 - LTR16C LTR ERVL 0 491 12 256 156 22 0 chr3 23851451 23851496 -203673082 + L2 LINE L2 3262 3307 -6 476 32 16 0 chr3 23852076 23852138 -203672440 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 368 287 21 0 chr3 23852150 23852246 -203672332 + MIR SINE MIR 67 165 -43 5044 156 29 9 chr3 23852300 23853308 -203671270 + L1MB7 LINE L1 5156 6183 -1 2086 96 3 7 chr3 23853322 23853613 -203670965 + AluSg SINE Alu 1 290 -20 1000 275 110 43 chr3 23853613 23854075 -203670503 - MLT1H LTR MaLR -42 507 15 234 264 8 74 chr3 23854078 23854199 -203670379 + MIR SINE MIR 149 261 -1 320 236 55 36 chr3 23854265 23854375 -203670203 - MIR3 SINE MIR -9 199 88 615 238 35 17 chr3 23854629 23854801 -203669777 + Charlie8 DNA MER1_type 8 182 -2235 250 254 70 0 chr3 23855633 23855704 -203668874 + MER91C DNA MER1_type 36 111 -29 286 266 266 8 chr3 23855880 23856004 -203668574 - MIR SINE MIR 0 262 107 294 214 167 12 chr3 23856037 23856121 -203668457 - MIR SINE MIR 0 262 166 186 180 0 80 chr3 23856092 23856142 -203668436 - MIR3 SINE MIR -43 165 120 * 246 123 175 0 chr3 23856266 23856323 -203668255 - MIR SINE MIR -147 115 49 2556 42 0 0 chr3 23856696 23857006 -203667572 + AluY SINE Alu 1 310 -1 548 244 81 47 chr3 23857707 23857879 -203666699 - MIR SINE MIR -22 240 63 238 258 135 11 chr3 23858072 23858161 -203666417 - MIR SINE MIR -12 250 151 474 353 59 23 chr3 23858301 23858522 -203666056 - MIR SINE MIR -29 233 5 458 250 112 0 chr3 23859302 23859454 -203665124 + L1MD3 LINE L1 7816 7984 -11 464 303 51 11 chr3 23860440 23860615 -203663963 + MIR SINE MIR 62 243 -19 1338 83 19 10 chr3 23860658 23860863 -203663715 - L1P LINE L1 -777 5369 5163 3566 92 11 0 chr3 23860863 23861340 -203663238 + L1PA10 LINE L1 5686 6167 -1 237 297 54 27 chr3 23861362 23861436 -203663142 - L2 LINE L2 -34 3279 3204 1011 132 52 11 chr3 23861595 23861769 -203662809 + MER5A DNA MER1_type 1 181 -8 189 146 0 83 chr3 23861771 23861819 -203662759 - MIR SINE MIR -93 169 126 373 281 25 75 chr3 23862353 23862552 -203662026 - LTR16A1 LTR ERVL 0 457 269 309 287 49 35 chr3 23862697 23862840 -203661738 - MIR3 SINE MIR -45 163 19 984 144 55 11 chr3 23862913 23863094 -203661484 - MER5A DNA MER1_type 0 189 1 218 289 36 12 chr3 23863839 23863922 -203660656 - MIR SINE MIR -71 191 107 617 261 71 60 chr3 23864381 23864664 -203659914 - MLT1J LTR MaLR -2 509 224 337 298 32 32 chr3 23865318 23865442 -203659136 - L2 LINE L2 -9 3263 3140 237 139 0 0 chr3 23865535 23865578 -203659000 + (CA)n Simple_repeat Simple_repeat 2 44 0 1127 208 96 96 chr3 23865854 23866288 -203658290 - LTR16A1 LTR ERVL 0 457 21 2140 127 40 30 chr3 23866288 23866659 -203657919 - THE1C LTR MaLR 0 375 1 1127 208 96 96 chr3 23866659 23866681 -203657897 - LTR16A1 LTR ERVL -435 22 1 289 274 95 0 chr3 23867315 23867399 -203657179 - MIR3 SINE MIR -6 202 111 2583 58 0 0 chr3 23867510 23867820 -203656758 - AluY SINE Alu -1 310 1 2409 94 0 0 chr3 23868690 23868987 -203655591 + AluSx SINE Alu 1 297 -15 282 342 9 9 chr3 23869145 23869259 -203655319 - MIR3 SINE MIR -32 176 63 250 278 176 9 chr3 23869405 23869513 -203655065 - MIR SINE MIR -67 141 16 277 198 19 0 chr3 23869777 23869883 -203654695 + CT-rich Low_complexity Low_complexity 2 109 0 414 0 0 0 chr3 23869883 23869929 -203654649 + (CA)n Simple_repeat Simple_repeat 1 46 0 254 223 48 68 chr3 23870537 23870640 -203653938 - MER91B DNA MER1_type 0 190 90 417 352 0 0 chr3 23870658 23870786 -203653792 - MER91B DNA MER1_type -61 129 2 335 299 0 0 chr3 23871213 23871320 -203653258 + (TG)n Simple_repeat Simple_repeat 2 108 0 1666 165 14 20 chr3 23872434 23872731 -203651847 + AluJb SINE Alu 1 295 -17 2417 80 3 3 chr3 23872731 23873042 -203651536 + AluY SINE Alu 1 311 0 378 0 0 0 chr3 23873841 23873883 -203650695 + (A)n Simple_repeat Simple_repeat 1 42 0 2568 57 7 0 chr3 23874688 23874987 -203649591 - AluSc SINE Alu -8 301 1 25 0 0 0 chr3 23875188 23875213 -203649365 + AT_rich Low_complexity Low_complexity 1 25 0 366 42 0 0 chr3 23875463 23875511 -203649067 + (TG)n Simple_repeat Simple_repeat 2 49 0 464 224 218 13 chr3 23875629 23875785 -203648793 - MIR SINE MIR -28 234 47 339 286 0 0 chr3 23875997 23876081 -203648497 - LTR37A LTR ERV1 -335 91 8 261 250 0 0 chr3 23876621 23876729 -203647849 + CT-rich Low_complexity Low_complexity 1 108 0 248 267 0 0 chr3 23877426 23877486 -203647092 + L2 LINE L2 3208 3267 -5 619 257 47 0 chr3 23877514 23877685 -203646893 - MIR SINE MIR -26 236 58 601 226 122 11 chr3 23877694 23877875 -203646703 - MIR SINE MIR -30 232 32 197 263 53 0 chr3 23878934 23878991 -203645587 - MIR3 SINE MIR -134 74 15 653 171 42 102 chr3 23879112 23879276 -203645302 + MER3 DNA MER1_type 6 157 -52 1499 149 73 44 chr3 23879276 23879587 -203644991 + AluJo SINE Alu 1 319 0 653 171 42 102 chr3 23879587 23879637 -203644941 + MER3 DNA MER1_type 157 208 -1 285 178 11 111 chr3 23880064 23880154 -203644424 - MIR3 SINE MIR -22 186 106 277 229 92 46 chr3 23881370 23881501 -203643077 + MLT1I LTR MaLR 1 137 -272 352 239 62 92 chr3 23881629 23881759 -203642819 + MLT1H LTR MaLR 424 549 0 700 265 46 53 chr3 23881963 23882495 -203642083 + MLT2F LTR ERVL 13 655 -8 359 188 25 0 chr3 23882600 23882680 -203641898 - MIR SINE MIR -6 256 175 1461 271 55 22 chr3 23883400 23883853 -203640725 + MLT2E LTR ERVL 1 468 -160 2297 73 14 3 chr3 23884517 23884805 -203639773 + AluY SINE Alu 1 291 -20 707 175 96 24 chr3 23884851 23885017 -203639561 + MER5B DNA MER1_type 1 178 0 405 228 73 32 chr3 23885017 23885140 -203639438 - MER5A DNA MER1_type -5 184 57 1304 237 122 10 chr3 23885166 23885575 -203639003 + MSTB2 LTR MaLR 1 455 -2 219 295 209 7 chr3 23885974 23886113 -203638465 - MIR SINE MIR -83 179 13 1074 186 144 23 chr3 23886923 23887187 -203637391 - AluJo SINE Alu -5 297 2 24 0 0 0 chr3 23887937 23887961 -203636617 + AT_rich Low_complexity Low_complexity 1 24 0 588 326 37 5 chr3 23889742 23889957 -203634621 + L2 LINE L2 113 334 -2980 963 194 50 0 chr3 23889957 23890137 -203634441 + MER20 DNA MER1_type 24 212 -7 513 282 121 0 chr3 23890149 23890355 -203634223 + L2 LINE L2 372 602 -2712 479 216 246 0 chr3 23890362 23890533 -203634045 + L2 LINE L2 928 1140 -2174 3090 254 126 25 chr3 23890560 23891886 -203632692 + L2 LINE L2 1683 3132 -181 21 0 0 0 chr3 23892336 23892357 -203632221 + AT_rich Low_complexity Low_complexity 1 21 0 249 255 75 28 chr3 23894152 23894258 -203630320 - MIR SINE MIR -88 174 64 200 235 94 35 chr3 23894576 23894661 -203629917 + MIR3 SINE MIR 105 194 -14 1893 95 8 4 chr3 23894811 23895063 -203629515 + AluSg SINE Alu 54 306 -4 869 279 137 29 chr3 23895534 23896300 -203628278 + L2 LINE L2 2455 3308 -5 27 0 0 0 chr3 23896589 23896616 -203627962 + AT_rich Low_complexity Low_complexity 1 27 0 2417 100 0 3 chr3 23896747 23897057 -203627521 - AluSq SINE Alu -2 311 3 479 250 97 17 chr3 23897968 23898144 -203626434 + L2 LINE L2 3122 3311 -2 1129 236 62 18 chr3 23898487 23898904 -203625674 - L1ME3A LINE L1 -2 6160 5701 2218 119 0 0 chr3 23899638 23899932 -203624646 - AluSx SINE Alu -18 294 1 526 271 197 5 chr3 23901342 23901530 -203623048 - MER58A DNA MER1_type 0 224 1 1754 166 16 29 chr3 23901803 23902116 -203622462 - AluJo SINE Alu -3 309 1 22 0 0 0 chr3 23902393 23902415 -203622163 + AT_rich Low_complexity Low_complexity 1 22 0 397 198 35 0 chr3 23902510 23902596 -203621982 + MER41E LTR ERV1 313 401 -111 23 33 0 0 chr3 23902635 23902665 -203621913 + AT_rich Low_complexity Low_complexity 1 30 0 198 241 89 13 chr3 23903083 23903162 -203621416 - MIR SINE MIR -121 141 57 1778 160 14 11 chr3 23903716 23903997 -203620581 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr3 23904002 23904024 -203620554 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 669 146 0 0 chr3 23904476 23904572 -203620006 + AluSg/x SINE Alu 199 294 -18 2267 95 6 16 chr3 23905337 23905652 -203618926 - AluSq SINE Alu -1 312 1 257 279 15 0 chr3 23906567 23906635 -203617943 - L2 LINE L2 -37 3276 3208 222 241 27 125 chr3 23906810 23906899 -203617679 - MIR SINE MIR -73 189 112 545 234 55 8 chr3 23906899 23907027 -203617551 - MER94 DNA DNA 0 134 1 222 241 27 125 chr3 23907027 23907049 -203617529 - MIR SINE MIR -150 112 89 1072 254 98 15 chr3 23907962 23908371 -203616207 - L2 LINE L2 -1146 2168 1726 437 238 273 6 chr3 23908415 23908587 -203615991 + MIR SINE MIR 45 262 0 260 209 180 7 chr3 23908630 23908769 -203615809 - L2 LINE L2 -1643 1671 1509 243 279 35 23 chr3 23908934 23909020 -203615558 + MIR3 SINE MIR 111 197 -11 1545 145 4 0 chr3 23909770 23910005 -203614573 + MER46A DNA MER2_type 1 236 0 1231 124 143 81 chr3 23910317 23910576 -203614002 - AluJb SINE Alu -5 307 33 242 222 19 0 chr3 23910872 23910926 -203613652 - L2 LINE L2 -1 3271 3217 207 0 0 0 chr3 23911245 23911268 -203613310 + (T)n Simple_repeat Simple_repeat 1 23 0 220 245 170 0 chr3 23911623 23911717 -203612861 + L2 LINE L2 3161 3270 -2 445 295 84 47 chr3 23911787 23911977 -203612601 + MIR SINE MIR 36 232 -30 1601 161 119 0 chr3 23912736 23913047 -203611531 - MER7A DNA MER2_type 0 346 1 942 178 114 25 chr3 23913053 23913289 -203611289 - MIR SINE MIR -4 258 2 646 224 106 25 chr3 23914082 23914327 -203610251 - MER5C DNA MER1_type -1 323 59 180 279 0 66 chr3 23914450 23914511 -203610067 + L2 LINE L2 3210 3266 -6 191 362 39 0 chr3 23917400 23917527 -203607051 + MIR SINE MIR 41 172 -90 329 303 62 100 chr3 23918121 23918441 -203606137 + L2 LINE L2 2965 3272 0 6675 194 55 45 chr3 23919692 23920617 -203603961 - L1MB8 LINE L1 -14 6164 5250 2203 106 3 17 chr3 23920617 23920919 -203603659 - AluSx SINE Alu -14 298 1 6675 194 55 45 chr3 23920919 23922622 -203601956 - L1MB8 LINE L1 -928 5250 3505 2226 107 0 19 chr3 23922622 23922932 -203601646 - AluSq SINE Alu -9 304 1 6675 194 55 45 chr3 23922932 23923227 -203601351 - L1MB8 LINE L1 -2673 3505 3215 22 0 0 0 chr3 23923659 23923681 -203600897 + AT_rich Low_complexity Low_complexity 1 22 0 203 222 0 32 chr3 23924069 23924132 -203600446 + T-rich Low_complexity Low_complexity 3 63 0 3266 219 41 39 chr3 23924732 23926375 -203598203 + L1ME1 LINE L1 4474 6116 -50 200 287 75 28 chr3 23928373 23928534 -203596044 - MIR SINE MIR -63 145 19 1345 214 154 3 chr3 23928541 23929055 -203595523 - MER20B DNA MER1_type -1 782 136 407 179 0 0 chr3 23929092 23929159 -203595419 + MER63 DNA MER1_type 681 747 -313 635 216 15 8 chr3 23929235 23929369 -203595209 - MER20B DNA MER1_type -642 141 7 696 212 0 120 chr3 23934051 23934301 -203590277 + MIR SINE MIR 6 225 -37 192 225 0 0 chr3 23934427 23934467 -203590111 + L2 LINE L2 3264 3303 -10 553 244 73 69 chr3 23934631 23934905 -203589673 - L1MC5 LINE L1 -54 7907 7633 701 237 47 19 chr3 23935018 23935229 -203589349 - L1MC5 LINE L1 -474 7487 7271 266 116 0 0 chr3 23935337 23935380 -203589198 - L1MC4 LINE L1 -791 7251 7209 * 681 218 83 49 chr3 23935361 23935687 -203588891 - L1MC5 LINE L1 -733 7228 6892 1015 230 63 37 chr3 23935781 23936129 -203588449 - L2 LINE L2 -1258 2056 1700 719 137 85 92 chr3 23936143 23936330 -203588248 - L1MD3 LINE L1 -11 7984 7581 266 265 44 0 chr3 23936429 23936497 -203588081 - L2 LINE L2 -18 3254 3184 24 32 0 0 chr3 23937368 23937399 -203587179 + AT_rich Low_complexity Low_complexity 1 31 0 596 265 179 0 chr3 23937575 23937809 -203586769 - L1ME LINE L1 -335 5786 5511 291 316 113 24 chr3 23938102 23938270 -203586308 + MIR3 SINE MIR 24 206 -2 261 290 101 24 chr3 23938308 23938515 -203586063 + L3b LINE CR1 1219 1441 -142 2488 91 0 0 chr3 23939114 23939421 -203585157 + AluSp SINE Alu 1 307 -6 30 0 0 0 chr3 23939581 23939611 -203584967 + AT_rich Low_complexity Low_complexity 1 30 0 1744 96 18 0 chr3 23939611 23939830 -203584748 - AluSg/x SINE Alu -22 290 68 213 274 237 27 chr3 23940098 23940284 -203584294 + L2 LINE L2 2582 2806 -508 316 291 10 10 chr3 23941354 23941457 -203583121 - MLT1I LTR MaLR -4 405 303 1761 155 31 14 chr3 23941457 23941748 -203582830 - AluJo SINE Alu -16 296 1 277 204 112 41 chr3 23941788 23941886 -203582692 - MLT1J2 LTR MaLR -279 171 67 230 139 28 0 chr3 23941899 23941935 -203582643 - MLT1L LTR MaLR -578 37 1 378 281 111 23 chr3 23941973 23942190 -203582388 - MIR SINE MIR -20 242 7 668 208 25 0 chr3 23942811 23942970 -203581608 + MER5B DNA MER1_type 1 163 -15 2323 97 3 0 chr3 23943522 23943820 -203580758 - AluSx SINE Alu -13 299 1 564 216 243 11 chr3 23946183 23946451 -203578127 + LTR16A LTR ERVL 120 449 -1 329 250 129 0 chr3 23947759 23947875 -203576703 + MIR SINE MIR 49 179 -83 * 331 192 77 0 chr3 23947868 23947946 -203576632 - MER91C DNA MER1_type -30 110 27 200 184 0 0 chr3 23948843 23948881 -203575697 - L2 LINE L2 0 3313 3276 323 316 44 44 chr3 23949142 23949367 -203575211 - L2 LINE L2 -436 2878 2654 4929 133 43 23 chr3 23952552 23953052 -203571526 - L1MA7 LINE L1 0 6291 5765 351 0 0 0 chr3 23953052 23953091 -203571487 + (TG)n Simple_repeat Simple_repeat 2 40 0 4929 133 43 23 chr3 23953091 23953449 -203571129 - L1MA7 LINE L1 -526 5765 5416 353 299 24 16 chr3 23953906 23954033 -203570545 - MIR3 SINE MIR -78 130 3 457 243 50 29 chr3 23954376 23954516 -203570062 + MIR SINE MIR 29 171 -91 448 208 23 98 chr3 23954708 23954881 -203569697 + MIR SINE MIR 86 245 -17 276 218 11 58 chr3 23955080 23955167 -203569411 + MIR SINE MIR 180 262 0 2446 74 0 10 chr3 23955883 23956192 -203568386 + AluY SINE Alu 1 306 -5 1000 144 22 11 chr3 23957008 23957188 -203567390 + MER5A DNA MER1_type 5 186 -3 21 0 0 0 chr3 23957301 23957322 -203567256 + AT_rich Low_complexity Low_complexity 1 21 0 279 315 19 19 chr3 23957356 23957376 -203567202 + GA-rich Low_complexity Low_complexity 4 23 -88 1489 189 120 17 chr3 23957376 23957735 -203566843 + MSTD LTR MaLR 1 396 0 279 315 19 19 chr3 23957735 23957822 -203566756 + GA-rich Low_complexity Low_complexity 22 111 0 804 292 103 48 chr3 23959672 23960128 -203564450 - HAL1 LINE L1 -182 2325 1845 1780 264 87 25 chr3 23960162 23960883 -203563695 - HAL1 LINE L1 -762 1745 980 320 242 31 119 chr3 23961107 23961241 -203563337 - HAL1 LINE L1 -2291 216 72 186 43 0 0 chr3 23961241 23961264 -203563314 + (CCTA)n Simple_repeat Simple_repeat 4 26 0 2933 208 74 7 chr3 23961264 23961875 -203562703 + MER82 DNA MER2_type 2 653 0 320 242 31 119 chr3 23961875 23961966 -203562612 - HAL1 LINE L1 -2433 74 10 1567 240 64 52 chr3 23962135 23962289 -203562289 + L1MC/D LINE L1 5270 5421 -2387 2439 79 0 0 chr3 23962289 23962593 -203561985 + AluY SINE Alu 1 304 -7 1567 240 64 52 chr3 23962593 23962955 -203561623 + L1MC/D LINE L1 5421 5792 -2016 186 291 163 35 chr3 23963013 23963105 -203561473 - L2 LINE L2 -926 2388 2309 2536 169 61 4 chr3 23963105 23963583 -203560995 + MLT1D LTR MaLR 1 505 0 186 291 163 35 chr3 23963583 23963631 -203560947 - L2 LINE L2 -1005 2309 2230 2418 81 39 39 chr3 23963818 23964200 -203560378 + L1PA11 LINE L1 5792 6173 -1 23 0 0 0 chr3 23965063 23965086 -203559492 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 23965256 23965284 -203559294 + AT_rich Low_complexity Low_complexity 1 28 0 1198 225 25 7 chr3 23965294 23965579 -203558999 + MLT1H LTR MaLR 9 298 -251 322 213 0 0 chr3 23965716 23965777 -203558801 + MLT1H LTR MaLR 486 546 -3 2396 72 0 0 chr3 23965867 23966172 -203558406 + AluSc SINE Alu 1 305 -4 380 301 135 6 chr3 23968102 23968258 -203556320 + L2 LINE L2 3138 3313 0 930 266 137 49 chr3 23968532 23968998 -203555580 + MLT1H LTR MaLR 41 547 -2 3834 137 36 15 chr3 23969225 23969966 -203554612 + L1MC1 LINE L1 5157 6324 -9 415 137 27 0 chr3 23969966 23970033 -203554545 + L1MC1 LINE L1 6254 6328 -5 275 287 108 44 chr3 23970074 23970431 -203554147 + L1ME4a LINE L1 5709 6094 -27 3044 148 49 12 chr3 23970431 23971007 -203553571 - L1MB8 LINE L1 0 6178 5582 275 287 108 44 chr3 23971007 23971036 -203553542 + L1ME4a LINE L1 6094 6120 -1 1279 164 0 22 chr3 23971309 23971540 -203553038 - AluJb SINE Alu -74 238 13 249 203 172 0 chr3 23971547 23971611 -203552967 - MER5A DNA MER1_type -114 75 1 480 329 85 16 chr3 23971751 23971997 -203552581 - L3 LINE CR1 -252 1325 1063 352 293 43 57 chr3 23972507 23972647 -203551931 - L3 LINE CR1 -666 911 774 1236 193 54 51 chr3 23973389 23973672 -203550906 + MLT1E2 LTR MaLR 287 573 -53 333 0 0 0 chr3 23973672 23973709 -203550869 + (TG)n Simple_repeat Simple_repeat 2 38 0 1236 193 54 51 chr3 23973709 23973721 -203550857 + MLT1E2 LTR MaLR 573 583 -43 2051 152 68 86 chr3 23973820 23974288 -203550290 + MLT2B1 LTR ERVL 61 520 0 275 184 0 0 chr3 23974644 23974693 -203549885 + L2 LINE L2 3261 3309 -4 904 288 71 44 chr3 23975016 23975423 -203549155 + MLT1L LTR MaLR 197 614 -1 972 219 45 28 chr3 23975670 23975974 -203548604 - MLT1D LTR MaLR 0 485 200 707 254 82 45 chr3 23976226 23976514 -203548064 - LTR16A1 LTR ERVL -2 455 175 22 0 0 0 chr3 23976740 23976762 -203547816 + AT_rich Low_complexity Low_complexity 1 22 0 1924 189 56 8 chr3 23978126 23978518 -203546060 - MLT2D LTR ERVL -3 411 1 507 294 54 21 chr3 23978520 23978828 -203545750 - L1MC4a LINE L1 -364 5798 5568 612 345 185 18 chr3 23979199 23979907 -203544671 + L3 LINE CR1 92 917 -660 259 371 11 0 chr3 23980574 23980663 -203543915 + L3 LINE CR1 1073 1162 -415 495 283 64 44 chr3 23981066 23981317 -203543261 - MIR SINE MIR -6 256 1 906 204 21 37 chr3 23981854 23981950 -203542628 + MER5A DNA MER1_type 1 94 -95 1548 202 30 48 chr3 23981950 23982346 -203542232 + MLT1B LTR MaLR 2 390 0 906 204 21 37 chr3 23982346 23982440 -203542138 + MER5A DNA MER1_type 94 188 -1 183 175 0 111 chr3 23982620 23982683 -203541895 - L2 LINE L2 -212 3060 3005 4729 173 6 28 chr3 23982811 23983667 -203540911 - MLT1A1-int LTR MaLR -898 837 1 1112 229 29 81 chr3 23983667 23984012 -203540566 - MLT1A1 LTR MaLR 0 365 39 943 189 27 27 chr3 23984035 23984220 -203540358 - MER5A DNA MER1_type -3 186 2 2120 95 3 0 chr3 23985218 23985545 -203539033 + AluSx SINE Alu 1 328 0 626 231 30 0 chr3 23985799 23985933 -203538645 + MIR SINE MIR 82 219 -43 201 74 0 0 chr3 23986815 23986842 -203537736 + (T)n Simple_repeat Simple_repeat 1 27 0 1980 124 7 3 chr3 23987135 23987441 -203537137 + AluSx SINE Alu 1 307 -5 1605 174 33 105 chr3 23987707 23988127 -203536451 + MLT1B LTR MaLR 1 390 0 304 274 130 43 chr3 23988289 23988497 -203536081 + L1ME4a LINE L1 5114 5339 -807 1531 153 94 0 chr3 23988555 23988830 -203535748 - AluJb SINE Alu -11 301 1 619 311 114 21 chr3 23988835 23989405 -203535173 + L1ME4a LINE L1 5445 6067 -54 406 306 75 35 chr3 23989484 23989657 -203534921 + L3 LINE CR1 1297 1476 -101 592 287 196 23 chr3 23989658 23990055 -203534523 - L2 LINE L2 -1 3312 2847 245 280 132 44 chr3 23990089 23990271 -203534307 + MLT1I LTR MaLR 91 288 -121 420 206 82 82 chr3 23990280 23990426 -203534152 + MLT1H LTR MaLR 404 549 0 219 287 69 35 chr3 23992790 23992877 -203531701 - L2 LINE L2 -23 3290 3201 25 0 0 0 chr3 23993015 23993040 -203531538 + AT_rich Low_complexity Low_complexity 1 25 0 321 262 0 12 chr3 23993071 23993155 -203531423 + L1ME3A LINE L1 5781 5863 -307 760 255 43 4 chr3 23993162 23993393 -203531185 + L1ME3A LINE L1 5922 6161 -9 26 0 0 0 chr3 23993799 23993825 -203530753 + AT_rich Low_complexity Low_complexity 1 26 0 287 237 26 0 chr3 23994085 23994161 -203530417 + L1MC5 LINE L1 7320 7397 -564 266 260 33 40 chr3 23994371 23994521 -203530057 + (CAGGG)n Simple_repeat Simple_repeat 1 149 0 497 277 63 0 chr3 23995007 23995166 -203529412 + MIR SINE MIR 73 241 -21 2192 60 7 30 chr3 23996749 23997049 -203527529 + AluY SINE Alu 1 293 -18 896 218 24 24 chr3 23997085 23997291 -203527287 - MER3 DNA MER1_type -3 206 1 347 236 8 65 chr3 23999728 23999851 -203524727 + MER113 DNA MER1_type? 92 207 -314 970 239 94 20 chr3 24000448 24000745 -203523833 - LTR16C LTR ERVL -8 483 165 208 233 14 68 chr3 24002537 24002610 -203521968 - MIR SINE MIR -144 118 50 318 292 21 10 chr3 24003759 24003855 -203520723 + MIR SINE MIR 126 222 -40 285 248 154 17 chr3 24004555 24004672 -203519906 - MIR SINE MIR -21 241 109 271 240 116 54 chr3 24005552 24005681 -203518897 + MIR3 SINE MIR 7 143 -65 533 267 129 56 chr3 24007724 24007956 -203516622 - MIR SINE MIR 0 262 14 357 349 78 10 chr3 24008474 24008666 -203515912 + MIR SINE MIR 6 210 -52 1308 128 5 0 chr3 24008925 24009113 -203515465 + MER5A DNA MER1_type 1 189 0 540 221 88 0 chr3 24009115 24009228 -203515350 + L2 LINE L2 3191 3313 0 186 255 133 51 chr3 24009318 24009416 -203515162 - L2 LINE L2 -8 3305 3200 271 219 126 17 chr3 24009570 24009689 -203514889 + L1ME4a LINE L1 5987 6118 -3 233 327 36 82 chr3 24009973 24010193 -203514385 - L2 LINE L2 -258 3014 2805 437 266 18 0 chr3 24010487 24010596 -203513982 - L1ME LINE L1 -454 5667 5557 351 303 41 14 chr3 24010838 24010983 -203513595 + L2 LINE L2 2130 2278 -1036 24 0 0 0 chr3 24011902 24011926 -203512652 + AT_rich Low_complexity Low_complexity 1 24 0 2283 143 60 18 chr3 24012259 24012658 -203511920 + MLT2C2 LTR ERVL 1 416 -48 1210 159 10 5 chr3 24013063 24013271 -203511307 - MER3 DNA MER1_type 0 209 1 359 303 9 4 chr3 24013832 24013957 -203510621 + MIR SINE MIR 30 154 -62 1148 206 35 9 chr3 24014665 24014909 -203509669 - MIR SINE MIR -5 257 8 199 304 113 26 chr3 24014953 24015147 -203509431 - L2 LINE L2 -481 2833 2623 361 209 15 0 chr3 24015322 24015389 -203509189 + MER94 DNA DNA 64 131 -3 369 0 0 0 chr3 24015928 24015969 -203508609 + (TC)n Simple_repeat Simple_repeat 2 42 0 454 300 0 0 chr3 24016610 24016730 -203507848 + L2 LINE L2 3194 3313 0 209 294 59 12 chr3 24016854 24016939 -203507639 - MIR3 SINE MIR -32 176 88 1354 221 58 29 chr3 24018058 24018578 -203506000 + MLT1G1 LTR MaLR 1 542 0 237 336 9 0 chr3 24019403 24019510 -203505068 + (CCA)n Simple_repeat Simple_repeat 3 110 0 22 35 0 0 chr3 24019643 24019672 -203504906 + AT_rich Low_complexity Low_complexity 1 29 0 225 245 0 0 chr3 24020151 24020200 -203504378 - MIR3 SINE MIR -2 206 158 243 0 0 0 chr3 24020215 24020242 -203504336 + (T)n Simple_repeat Simple_repeat 1 27 0 207 182 39 0 chr3 24020907 24020984 -203503594 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 87 130 0 chr3 24020989 24021035 -203503543 - L1MC4 LINE L1 -1340 6702 6651 181 167 0 0 chr3 24021338 24021374 -203503204 - L2 LINE L2 -2 3270 3235 180 0 0 0 chr3 24021398 24021418 -203503160 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 184 319 35 86 chr3 24021425 24021657 -203502921 - L2 LINE L2 -126 3187 2968 2278 98 0 10 chr3 24021991 24022298 -203502280 - AluY SINE Alu -7 304 1 1763 170 3 38 chr3 24022424 24022741 -203501837 + AluJo SINE Alu 1 306 -6 911 215 196 32 chr3 24022749 24023065 -203501513 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chr3 24023423 24023444 -203501134 + AT_rich Low_complexity Low_complexity 1 21 0 621 231 178 0 chr3 24023706 24023787 -203500791 + Charlie5 DNA MER1_type 2 67 -2557 1610 138 4 28 chr3 24023787 24024040 -203500538 - AluJo SINE Alu -17 295 49 621 231 178 0 chr3 24024040 24024127 -203500451 + Charlie5 DNA MER1_type 67 200 -2424 313 138 138 0 chr3 24024125 24024183 -203500395 + Charlie5 DNA MER1_type 2352 2417 -195 * 240 194 0 0 chr3 24024180 24024216 -203500362 - AluJo SINE Alu -250 52 17 * 576 174 78 50 chr3 24024205 24024423 -203500155 + Charlie5 DNA MER1_type 2382 2605 -7 22 35 0 0 chr3 24024608 24024637 -203499941 + AT_rich Low_complexity Low_complexity 1 29 0 424 167 0 0 chr3 24024637 24024703 -203499875 - AluJ/FRAM SINE Alu -21 291 226 2453 101 0 0 chr3 24025120 24025426 -203499152 + AluSq SINE Alu 1 306 -7 2274 150 95 35 chr3 24025446 24025939 -203498639 + L1MA9 LINE L1 5752 6274 -38 224 122 24 0 chr3 24026112 24026153 -203498425 + CT-rich Low_complexity Low_complexity 1 42 0 237 198 27 117 chr3 24026215 24026300 -203498278 + MER103 DNA DNA 20 94 -72 2532 55 7 7 chr3 24026300 24026609 -203497969 + AluSg SINE Alu 1 309 -1 237 198 27 117 chr3 24026609 24026634 -203497944 + MER103 DNA DNA 94 120 -46 24 0 0 0 chr3 24027596 24027620 -203496958 + AT_rich Low_complexity Low_complexity 1 24 0 217 281 255 42 chr3 24027819 24028587 -203495991 + L2 LINE L2 1977 2908 -406 1559 153 36 68 chr3 24029367 24029675 -203494903 + AluJb SINE Alu 3 300 -12 297 351 87 5 chr3 24029738 24029946 -203494632 + L2 LINE L2 1832 2056 -1258 284 198 143 11 chr3 24029958 24030049 -203494529 + MER5C DNA MER1_type 222 324 0 289 290 21 0 chr3 24030165 24030258 -203494320 + Charlie8 DNA MER1_type 157 251 -2166 503 258 92 37 chr3 24031577 24031794 -203492784 + MIR SINE MIR 3 231 -31 541 80 16 59 chr3 24031910 24032097 -203492481 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 584 44 116 0 chr3 24032086 24032406 -203492172 + (TA)n Simple_repeat Simple_repeat 1 357 0 503 181 169 46 chr3 24034613 24034658 -203489920 - LTR37B LTR ERV1 -2 466 428 874 171 127 0 chr3 24034658 24034839 -203489739 - MER6B DNA MER2_type -3 207 4 503 181 169 46 chr3 24034839 24035030 -203489548 - LTR37B LTR ERV1 -40 428 201 1731 163 3 39 chr3 24035186 24035492 -203489086 - AluJo SINE Alu -17 295 1 190 221 91 13 chr3 24036327 24036404 -203488174 + L2 LINE L2 3221 3303 -10 184 224 53 40 chr3 24036624 24036700 -203487878 + L2 LINE L2 3221 3297 -16 1128 105 13 0 chr3 24037533 24037685 -203486893 - AluSq SINE Alu -26 287 134 2374 80 0 7 chr3 24037685 24037985 -203486593 - AluSx SINE Alu -12 300 3 24 0 0 0 chr3 24037991 24038015 -203486563 + AT_rich Low_complexity Low_complexity 1 24 0 423 0 0 0 chr3 24038213 24038260 -203486318 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr3 24038509 24038533 -203486045 + AT_rich Low_complexity Low_complexity 1 24 0 1998 245 116 8 chr3 24040573 24041107 -203483471 + MLT1E LTR MaLR 1 592 -1 464 243 14 14 chr3 24041859 24042003 -203482575 + MIR SINE MIR 76 219 -43 1644 247 99 99 chr3 24042107 24042325 -203482253 - L2 LINE L2 0 3313 3096 2271 123 10 0 chr3 24042325 24042634 -203481944 + AluSx SINE Alu 1 312 0 1644 247 99 99 chr3 24042634 24043397 -203481181 - L2 LINE L2 -217 3096 2285 227 200 71 29 chr3 24043397 24043467 -203481111 - L1MC4 LINE L1 -1322 6720 6648 1644 247 99 99 chr3 24043467 24043771 -203480807 - L2 LINE L2 -1028 2285 1982 1207 178 54 8 chr3 24044371 24044612 -203479966 + L1MD3 LINE L1 7721 7972 -23 920 93 0 0 chr3 24044868 24044997 -203479581 - L1MB4 LINE L1 0 6180 6052 1799 139 60 30 chr3 24044998 24045300 -203479278 - AluJb SINE Alu -1 311 1 1510 143 9 0 chr3 24045784 24046007 -203478571 - AluJb SINE Alu -87 225 1 727 183 41 71 chr3 24048616 24048785 -203475793 + MER3 DNA MER1_type 27 190 -19 596 180 152 0 chr3 24048813 24048967 -203475611 - MER5A DNA MER1_type -5 184 4 257 226 29 29 chr3 24049077 24049179 -203475399 - Charlie7 DNA MER1_type -99 2513 2412 955 262 151 66 chr3 24049191 24049347 -203475231 - Charlie7 DNA MER1_type -1919 693 552 2433 86 0 3 chr3 24049347 24049650 -203474928 - AluSc SINE Alu -7 302 1 955 262 151 66 chr3 24049650 24050055 -203474523 - Charlie7 DNA MER1_type -2060 552 84 2449 71 0 7 chr3 24050349 24050644 -203473934 + AluSc SINE Alu 1 293 -16 340 322 69 39 chr3 24050652 24050885 -203473693 + L1M4 LINE L1 4724 4963 -1183 2390 81 0 7 chr3 24050885 24051181 -203473397 + AluY SINE Alu 1 294 -17 915 202 67 19 chr3 24051213 24051421 -203473157 + MER20 DNA MER1_type 1 218 -1 345 24 0 0 chr3 24054661 24054703 -203469875 + (TG)n Simple_repeat Simple_repeat 2 43 0 409 123 0 15 chr3 24055168 24055233 -203469345 + Charlie8 DNA MER1_type 114 177 -2240 191 283 17 0 chr3 24057635 24057695 -203466883 + L2 LINE L2 3210 3270 -2 1751 186 7 3 chr3 24058105 24058412 -203466166 - AluJo SINE Alu -4 308 1 301 285 18 42 chr3 24059060 24059225 -203465353 - MIR3 SINE MIR -37 171 11 453 243 151 0 chr3 24059328 24059480 -203465098 + MER5A DNA MER1_type 9 183 -6 464 327 118 0 chr3 24059903 24060123 -203464455 + MIR SINE MIR 16 261 -1 1917 177 0 0 chr3 24060236 24060546 -203464032 + AluJb SINE Alu 1 310 -2 845 167 0 0 chr3 24060556 24060688 -203463890 + FLAM_C SINE Alu 2 133 0 27 0 0 0 chr3 24061174 24061201 -203463377 + AT_rich Low_complexity Low_complexity 1 27 0 1508 164 47 37 chr3 24062242 24062362 -203462216 + AluJb SINE Alu 1 118 -194 315 0 0 0 chr3 24062362 24062397 -203462181 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1508 164 47 37 chr3 24062397 24062575 -203462003 + AluJb SINE Alu 118 302 -10 250 220 34 0 chr3 24062646 24062705 -203461873 + GA-rich Low_complexity Low_complexity 2 62 0 398 230 168 97 chr3 24063005 24063287 -203461291 - L1MC4a LINE L1 -1635 6173 5856 2319 104 0 3 chr3 24063287 24063595 -203460983 + AluSq SINE Alu 1 307 -6 398 230 168 97 chr3 24063595 24063694 -203460884 - L1MC4a LINE L1 -1952 5856 5765 303 240 126 113 chr3 24063695 24063816 -203460762 - L1MC4a LINE L1 -2082 5726 5608 616 63 0 0 chr3 24063816 24063895 -203460683 + L1MA3 LINE L1 6225 6303 -2 303 240 126 113 chr3 24063895 24063918 -203460660 - L1MC4a LINE L1 -2200 5608 5587 254 93 0 23 chr3 24063918 24063961 -203460617 + (TA)n Simple_repeat Simple_repeat 2 43 0 303 240 126 113 chr3 24063961 24064282 -203460296 - L1MC4a LINE L1 -2221 5587 5254 699 142 0 0 chr3 24064359 24064465 -203460113 - AluSg/x SINE Alu -14 295 190 306 349 115 0 chr3 24064470 24064662 -203459916 - L1MC4a LINE L1 -979 5167 4954 392 336 74 45 chr3 24064769 24065216 -203459362 - L1MC4a LINE L1 -1344 4802 4343 1366 148 0 14 chr3 24065431 24065648 -203458930 + AluJb SINE Alu 55 268 -44 252 0 0 0 chr3 24065652 24065680 -203458898 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 401 195 91 0 chr3 24065680 24065757 -203458821 + MER96B DNA MER1_type? 170 253 -164 2237 125 0 3 chr3 24066304 24066616 -203457962 + AluSx SINE Alu 2 312 0 244 258 22 67 chr3 24066680 24066769 -203457809 + MIR SINE MIR 119 203 -59 294 290 58 72 chr3 24067402 24067540 -203457038 + MIR3 SINE MIR 72 207 -1 1204 152 0 0 chr3 24068259 24068437 -203456141 - AluSg/x SINE Alu -66 246 69 302 250 136 50 chr3 24068695 24068835 -203455743 - Charlie8 DNA MER1_type -2244 173 22 234 192 0 0 chr3 24069300 24069352 -203455226 + A-rich Low_complexity Low_complexity 1 52 0 279 0 0 0 chr3 24070130 24070161 -203454417 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1221 181 0 27 chr3 24070199 24070420 -203454158 - L1MB5 LINE L1 0 6174 5960 5557 161 17 14 chr3 24070463 24071478 -203453100 - L1MA9 LINE L1 -39 6273 5257 329 0 24 0 chr3 24071744 24071785 -203452793 + (CA)n Simple_repeat Simple_repeat 2 43 0 4815 144 27 1 chr3 24072390 24073125 -203451453 + MER6 DNA MER2_type 111 864 -1 237 226 19 0 chr3 24073286 24073339 -203451239 + GA-rich Low_complexity Low_complexity 2 55 0 262 209 0 22 chr3 24073393 24073484 -203451094 + CT-rich Low_complexity Low_complexity 2 90 0 342 0 0 0 chr3 24073484 24073522 -203451056 + (CA)n Simple_repeat Simple_repeat 1 38 0 1630 147 45 13 chr3 24073533 24073845 -203450733 + MER33 DNA MER1_type 3 324 0 588 153 110 0 chr3 24074304 24074422 -203450156 - L1MB3 LINE L1 -7 6176 6046 301 281 0 0 chr3 24075952 24076016 -203448562 + polypyrimidine Low_complexity Low_complexity 1 64 0 1366 162 54 17 chr3 24076017 24076314 -203448264 + MER33 DNA MER1_type 17 324 0 693 289 70 0 chr3 24077328 24077529 -203447049 + MIR SINE MIR 32 246 -16 495 321 58 47 chr3 24078913 24079256 -203445322 - L2 LINE L2 -961 2353 2007 4051 167 79 9 chr3 24079534 24080218 -203444360 - MER44D DNA MER2_type -1 604 1 800 281 66 4 chr3 24081002 24081244 -203443334 - MIR SINE MIR 0 262 6 280 331 99 7 chr3 24081256 24081398 -203443180 - MIR3 SINE MIR -45 163 9 232 155 24 179 chr3 24082349 24082433 -203442145 + MER5A DNA MER1_type 35 105 -84 275 259 15 44 chr3 24082474 24082609 -203441969 + MER117 DNA MER1_type 32 162 -35 261 330 53 0 chr3 24082807 24082901 -203441677 + L2 LINE L2 3209 3307 -6 588 165 0 33 chr3 24084579 24084700 -203439878 - Charlie1 DNA MER1_type -25 2736 2620 * 822 202 187 5 chr3 24084688 24084886 -203439692 - Charlie1 DNA MER1_type -2527 234 1 601 271 181 0 chr3 24085257 24085478 -203439100 + MIR SINE MIR 2 262 0 1539 176 15 112 chr3 24085769 24086172 -203438406 + MLT1A1 LTR MaLR 2 365 0 283 299 15 0 chr3 24086173 24086240 -203438338 - L2 LINE L2 -17 3255 3188 1865 157 20 3 chr3 24086931 24087231 -203437347 - AluJb SINE Alu -7 305 1 863 173 46 12 chr3 24087416 24087589 -203436989 + AluJo SINE Alu 101 279 -33 26 64 0 0 chr3 24087594 24087641 -203436937 + AT_rich Low_complexity Low_complexity 1 47 0 213 233 0 0 chr3 24089414 24089457 -203435121 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 861 254 18 5 chr3 24090058 24090278 -203434300 + MIR SINE MIR 10 232 -30 1367 207 127 55 chr3 24090329 24090787 -203433791 + MLT1D LTR MaLR 15 505 0 752 250 54 92 chr3 24091124 24091831 -203432747 - L1ME LINE L1 -4981 1089 545 1286 156 8 63 chr3 24092628 24092865 -203431713 + MER58A DNA MER1_type 1 224 0 324 0 0 0 chr3 24093420 24093456 -203431122 + (CA)n Simple_repeat Simple_repeat 2 37 0 259 224 0 0 chr3 24094752 24094810 -203429768 + (CA)n Simple_repeat Simple_repeat 2 59 0 217 205 0 0 chr3 24095757 24095796 -203428782 + GA-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr3 24096630 24096650 -203427928 + (A)n Simple_repeat Simple_repeat 1 20 0 594 272 214 0 chr3 24097126 24097332 -203427246 + MIR SINE MIR 13 262 0 287 273 11 23 chr3 24097944 24098032 -203426546 - MIR SINE MIR -77 131 45 186 262 0 0 chr3 24098096 24098138 -203426440 + MIR SINE MIR 107 148 -114 2761 233 57 16 chr3 24098152 24098221 -203426357 + L1ME LINE L1 7 72 -5998 249 83 0 0 chr3 24098221 24098257 -203426321 + (CA)n Simple_repeat Simple_repeat 1 36 0 222 37 0 0 chr3 24098259 24098286 -203426292 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2761 233 57 16 chr3 24098286 24098948 -203425630 + L1ME LINE L1 72 771 -5299 607 299 87 9 chr3 24099292 24099523 -203425055 + MIR SINE MIR 1 249 -13 217 364 13 0 chr3 24099539 24099616 -203424962 - MIR SINE MIR -86 122 45 22 35 0 0 chr3 24099788 24099817 -203424761 + AT_rich Low_complexity Low_complexity 1 29 0 210 222 52 111 chr3 24100838 24100973 -203423605 + MIR3 SINE MIR 12 138 -70 2104 132 0 19 chr3 24101387 24101705 -203422873 - AluSx SINE Alu 0 312 1 210 250 0 0 chr3 24102010 24102050 -203422528 - MIR SINE MIR -57 151 112 393 239 130 93 chr3 24102123 24102370 -203422208 - MIR SINE MIR 0 262 7 1451 278 45 47 chr3 24102829 24102913 -203421665 + ERVL LTR ERVL 4750 4833 -931 2422 158 82 2 chr3 24102913 24103313 -203421265 + MSTB1 LTR MaLR 1 432 0 1451 278 45 47 chr3 24103313 24103779 -203420799 + ERVL LTR ERVL 4833 5299 -465 337 260 164 7 chr3 24104066 24104212 -203420366 + LTR50 LTR ERVL 1 169 -626 689 276 88 57 chr3 24104302 24104654 -203419924 - L2 LINE L2 0 3313 2951 419 191 22 11 chr3 24106079 24106168 -203418410 + LTR16A1 LTR ERVL 55 144 -313 691 194 39 0 chr3 24106330 24106459 -203418119 - MIR SINE MIR -116 146 13 1928 177 60 93 chr3 24106514 24107061 -203417517 - MLT1F1 LTR MaLR -13 554 3 258 276 138 0 chr3 24108037 24108124 -203416454 + L2 LINE L2 3215 3313 0 438 94 0 0 chr3 24108965 24109029 -203415549 + (CA)n Simple_repeat Simple_repeat 2 65 0 368 307 31 8 chr3 24110528 24110655 -203413923 + MIR SINE MIR 18 147 -115 221 149 21 21 chr3 24111507 24111554 -203413024 - MER5B DNA MER1_type -85 93 47 1266 158 0 0 chr3 24111794 24111978 -203412600 + MER5A DNA MER1_type 5 188 -1 253 214 38 114 chr3 24112805 24112936 -203411642 + MIR SINE MIR 80 200 -62 1542 175 41 16 chr3 24112995 24113315 -203411263 + L1ME1 LINE L1 5521 5848 -318 1146 213 108 20 chr3 24113480 24113785 -203410793 + L1ME1 LINE L1 5830 6161 -5 248 335 145 19 chr3 24114159 24114532 -203410046 + L2 LINE L2 2546 2965 -349 936 174 60 65 chr3 24114775 24115190 -203409388 + MLT1A2 LTR MaLR 1 374 0 267 304 59 0 chr3 24115193 24115288 -203409290 + L2 LINE L2 3173 3272 0 1057 170 26 10 chr3 24115421 24115615 -203408963 + MER3 DNA MER1_type 13 209 0 2257 84 13 0 chr3 24116099 24116397 -203408181 - AluSp SINE Alu -11 302 1 349 289 41 8 chr3 24116699 24116820 -203407758 + MIR SINE MIR 39 163 -99 1388 209 94 44 chr3 24116820 24117134 -203407444 + L1ME1 LINE L1 5644 5996 -166 1990 134 0 0 chr3 24117134 24117425 -203407153 + AluSx SINE Alu 1 291 -21 1388 209 94 44 chr3 24117425 24117597 -203406981 + L1ME1 LINE L1 5996 6158 -4 2041 135 0 0 chr3 24117630 24117934 -203406644 + AluSx SINE Alu 7 310 -2 832 263 41 7 chr3 24118593 24118895 -203405683 + L1ME4a LINE L1 5569 5897 -224 1020 217 114 48 chr3 24118908 24119423 -203405155 - L2 LINE L2 -4 3309 2713 245 50 0 25 chr3 24119748 24119788 -203404790 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 182 261 43 0 chr3 24120334 24120380 -203404198 - L2 LINE L2 -15 3257 3210 * 502 278 52 77 chr3 24120348 24120542 -203404036 - MIR SINE MIR -25 237 49 183 313 16 0 chr3 24120829 24120893 -203403685 + L2 LINE L2 3192 3256 -16 478 228 14 83 chr3 24121140 24121234 -203403344 + Charlie8 DNA MER1_type 9 91 -250 2305 71 0 3 chr3 24121234 24121529 -203403049 - AluSx SINE Alu -16 296 3 478 228 14 83 chr3 24121529 24121579 -203402999 + Charlie8 DNA MER1_type 91 143 -198 661 244 137 0 chr3 24123730 24123898 -203400680 - MER91A DNA MER1_type -5 191 1 2676 256 56 22 chr3 24123967 24124131 -203400447 + L1ME3A LINE L1 5079 5236 -934 830 224 71 5 chr3 24124131 24124327 -203400251 + MER63A DNA MER1_type 2 210 0 2676 256 56 22 chr3 24124327 24125224 -203399354 + L1ME3A LINE L1 5236 6170 0 879 241 200 11 chr3 24126140 24126505 -203398073 + MER57B LTR ERV1 1 434 0 774 254 198 47 chr3 24127190 24127659 -203396919 + MLT1G1 LTR MaLR 4 543 -24 881 196 6 6 chr3 24127761 24127924 -203396654 - L1MC/D LINE L1 -591 5768 5606 183 80 0 0 chr3 24128770 24128795 -203395783 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 291 226 129 0 chr3 24128795 24128888 -203395690 - L2 LINE L2 -13 3259 3155 775 231 6 0 chr3 24128977 24129133 -203395445 + AluJo SINE Alu 125 281 -31 207 69 0 0 chr3 24129141 24129170 -203395408 + (CA)n Simple_repeat Simple_repeat 2 30 0 364 284 43 72 chr3 24129872 24130080 -203394498 + L1ME4a LINE L1 5851 6052 -69 1393 125 40 98 chr3 24130115 24130411 -203394167 + AluJb SINE Alu 33 311 -1 2469 177 107 4 chr3 24130436 24130922 -203393656 + MLT1F LTR MaLR 7 542 0 294 185 0 0 chr3 24130991 24131045 -203393533 + MLT1G1 LTR MaLR 512 565 -2 543 226 168 0 chr3 24131217 24131372 -203393206 + MER5A DNA MER1_type 9 189 0 646 208 195 0 chr3 24131380 24131529 -203393049 + MER5B DNA MER1_type 1 178 0 2718 204 45 7 chr3 24132052 24132612 -203391966 - MER119 DNA MER1_type 0 583 3 2142 139 25 70 chr3 24133397 24133828 -203390750 - MLT2D LTR ERVL -2 412 1 899 281 28 61 chr3 24133870 24134261 -203390317 - L2 LINE L2 0 3313 2936 305 274 68 0 chr3 24134304 24134421 -203390157 - L2 LINE L2 -471 2843 2719 779 254 203 4 chr3 24134456 24134732 -203389846 - L2 LINE L2 -728 2586 2256 205 340 90 0 chr3 24134757 24134857 -203389721 + L2 LINE L2 3145 3253 -19 847 218 86 49 chr3 24134963 24135206 -203389372 + MIR SINE MIR 1 252 -10 444 123 0 0 chr3 24135598 24135671 -203388907 + (CA)n Simple_repeat Simple_repeat 2 74 0 960 156 0 0 chr3 24135682 24135862 -203388716 + (CA)n Simple_repeat Simple_repeat 1 180 0 291 54 0 0 chr3 24136685 24136722 -203387856 + (CA)n Simple_repeat Simple_repeat 1 37 0 1087 167 24 29 chr3 24136852 24137062 -203387516 + MER3 DNA MER1_type 1 209 0 507 274 92 6 chr3 24137391 24137555 -203387023 + MIR SINE MIR 85 262 0 243 276 0 61 chr3 24137782 24137880 -203386698 - L2 LINE L2 -6 3307 3216 263 179 75 60 chr3 24138419 24138486 -203386092 + L3b LINE CR1 1430 1497 -86 2125 207 56 78 chr3 24138633 24139291 -203385287 + L1ME2 LINE L1 5511 6154 -10 236 179 179 24 chr3 24139456 24139540 -203385038 + L1MC4 LINE L1 7929 8025 -17 30 77 0 0 chr3 24141673 24141738 -203382840 + GC_rich Low_complexity Low_complexity 1 65 0 532 276 0 0 chr3 24142419 24142535 -203382043 + MIR SINE MIR 5 120 -142 276 152 0 0 chr3 24143619 24143665 -203380913 + L2 LINE L2 3268 3313 0 243 0 0 0 chr3 24145264 24145291 -203379287 + (A)n Simple_repeat Simple_repeat 1 27 0 1129 276 53 18 chr3 24146587 24146982 -203377596 + MLT1I LTR MaLR 1 409 0 455 258 16 16 chr3 24147160 24147284 -203377294 - L2 LINE L2 0 3313 3190 280 329 14 71 chr3 24147299 24147439 -203377139 - MIR3 SINE MIR -68 140 9 301 226 0 0 chr3 24147582 24147644 -203376934 + L2 LINE L2 3210 3271 -1 549 324 74 34 chr3 24148191 24148487 -203376091 + L1ME LINE L1 20 327 -5743 214 260 0 0 chr3 24149423 24149473 -203375105 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 368 302 8 8 chr3 24150191 24150317 -203374261 - LTR67 LTR ERVL 0 557 432 773 267 124 50 chr3 24150330 24150791 -203373787 + MLT1H1 LTR MaLR 35 535 -20 2632 136 29 10 chr3 24150791 24151209 -203373369 - MSTB LTR MaLR 0 426 1 773 267 124 50 chr3 24151209 24151230 -203373348 + MLT1H1 LTR MaLR 535 553 -2 625 266 25 19 chr3 24152301 24152494 -203372084 - MLT1G1 LTR MaLR -6 587 372 270 138 32 32 chr3 24152499 24152593 -203371985 + CT-rich Low_complexity Low_complexity 2 95 0 998 234 63 23 chr3 24152598 24152897 -203371681 - MLT1G1 LTR MaLR -284 311 1 829 232 25 51 chr3 24152897 24153219 -203371359 - LTR16A1 LTR ERVL -7 450 81 1311 248 35 64 chr3 24153490 24153942 -203370636 - MLT1K LTR MaLR -58 530 92 308 282 35 114 chr3 24154432 24154687 -203369891 + L3b LINE CR1 1151 1385 -198 263 242 61 10 chr3 24154892 24154991 -203369587 - MLT1L LTR MaLR 0 615 512 290 269 144 38 chr3 24155055 24155215 -203369363 - MLT1L LTR MaLR -228 387 211 534 314 64 70 chr3 24155489 24155945 -203368633 + MLT1K LTR MaLR 133 585 -3 357 246 27 27 chr3 24156294 24156404 -203368174 + MIR3 SINE MIR 97 206 -2 235 239 303 0 chr3 24156401 24156510 -203368068 - MIR3 SINE MIR -44 164 23 * 465 281 6 31 chr3 24157300 24157460 -203367118 + MER112 DNA MER1_type 6 161 -99 1376 174 26 40 chr3 24157487 24157791 -203366787 - AluJo SINE Alu -8 304 5 870 290 61 43 chr3 24158075 24158516 -203366062 - LTR16B LTR ERVL -15 449 1 423 287 141 61 chr3 24158546 24159319 -203365259 - L2 LINE L2 -2 3270 2453 289 278 74 37 chr3 24160276 24160384 -203364194 + L2 LINE L2 3202 3313 0 364 310 48 83 chr3 24160458 24160687 -203363891 - L1MC4 LINE L1 -1 8041 7821 4350 143 26 1 chr3 24160741 24161476 -203363102 - L1MB3 LINE L1 -4 6179 5427 1379 134 104 5 chr3 24161504 24161840 -203362738 - LTR47A LTR ERVL 0 452 1 * 2213 160 27 3 chr3 24161840 24162207 -203362371 - MSTB1 LTR MaLR -40 392 17 257 86 0 0 chr3 24162226 24162261 -203362317 - MSTB LTR MaLR -379 53 19 294 54 0 0 chr3 24162282 24162319 -203362259 - MSTB LTR MaLR -373 53 17 257 86 0 0 chr3 24162310 24162345 -203362233 - MSTB1 LTR MaLR -379 53 19 * 258 62 0 0 chr3 24162338 24162370 -203362208 - MSTB1 LTR MaLR -373 53 22 283 167 0 19 chr3 24162394 24162448 -203362130 - MSTB1 LTR MaLR -379 53 1 885 98 0 8 chr3 24162448 24162581 -203361997 - L1MB3 LINE L1 -734 5449 5318 1809 184 103 29 chr3 24162586 24163004 -203361574 - L1ME2 LINE L1 -10 6154 5706 343 292 180 25 chr3 24163130 24163291 -203361287 - MIR SINE MIR -14 248 63 2146 90 3 10 chr3 24163550 24163850 -203360728 + AluSg SINE Alu 1 298 -12 1740 233 42 22 chr3 24164101 24164552 -203360026 + MLT1J LTR MaLR 24 483 -28 188 255 21 0 chr3 24164553 24164600 -203359978 - MIR SINE MIR -96 166 119 406 253 167 19 chr3 24164833 24164995 -203359583 + MIR SINE MIR 77 262 0 284 48 24 0 chr3 24165752 24165794 -203358784 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 26 0 0 chr3 24165806 24165844 -203358734 + AT_rich Low_complexity Low_complexity 1 38 0 658 99 44 0 chr3 24165844 24166121 -203358457 + (TA)n Simple_repeat Simple_repeat 1 289 0 324 289 75 62 chr3 24165844 24166111 -203358467 - L1M4 LINE L1 -1621 4522 4214 * 334 277 11 43 chr3 24166081 24166175 -203358403 - L1MC4 LINE L1 -1340 6702 6612 * 372 200 14 14 chr3 24166121 24166191 -203358387 + L1MCa LINE L1 1995 2064 -4362 349 273 0 40 chr3 24166176 24166275 -203358303 - L1MC4 LINE L1 -1339 6703 6609 * 313 131 47 0 chr3 24166193 24166275 -203358303 + (TA)n Simple_repeat Simple_repeat 1 112 0 * 25 0 0 0 chr3 24166275 24166300 -203358278 + AT_rich Low_complexity Low_complexity 1 25 0 262 241 160 0 chr3 24167167 24167287 -203357291 + MIR SINE MIR 100 246 -16 21 0 0 0 chr3 24167289 24167310 -203357268 + AT_rich Low_complexity Low_complexity 1 21 0 436 335 56 37 chr3 24168246 24168461 -203356117 - L2 LINE L2 -527 2787 2569 1738 181 0 23 chr3 24170024 24170334 -203354244 - AluJo SINE Alu -9 303 1 338 253 42 58 chr3 24170871 24171061 -203353517 - MLT1J LTR MaLR 0 511 325 1631 232 21 22 chr3 24171066 24171600 -203352978 - MER119 DNA MER1_type 0 583 1 278 239 0 0 chr3 24172323 24172390 -203352188 + MER116 DNA Mariner 8 74 -6 230 250 26 26 chr3 24173048 24173124 -203351454 + MIR SINE MIR 56 131 -131 1956 52 16 0 chr3 24173913 24174164 -203350414 + L1PA6 LINE L1 5898 6152 -2 614 233 0 32 chr3 24174454 24174634 -203349944 + MIR SINE MIR 33 203 -59 306 278 83 49 chr3 24174692 24174836 -203349742 - L3 LINE CR1 -6 1571 1423 1270 264 70 22 chr3 24175798 24176295 -203348283 + MLT1L LTR MaLR 1 521 -94 625 240 180 11 chr3 24176301 24176484 -203348094 + MIR SINE MIR 12 225 -37 2269 173 44 21 chr3 24176615 24177134 -203347444 + L1M4 LINE L1 5285 5815 -359 446 319 157 20 chr3 24177145 24177439 -203347139 + L1M4 LINE L1 4358 4723 -1423 658 175 16 48 chr3 24177439 24177565 -203347013 + FLAM_A SINE Alu 1 122 -11 446 319 157 20 chr3 24177565 24177671 -203346907 + L1M4 LINE L1 4723 4813 -1333 254 254 15 0 chr3 24177845 24177912 -203346666 - MLT1J2 LTR MaLR -323 127 60 251 273 45 0 chr3 24179099 24179165 -203345413 + MIR SINE MIR 78 146 -62 1018 146 6 24 chr3 24179219 24179384 -203345194 + AluJo SINE Alu 1 162 -150 573 133 16 45 chr3 24179422 24179689 -203344889 + GA-rich Low_complexity Low_complexity 1 259 0 355 228 193 0 chr3 24180483 24180597 -203343981 + MIR3 SINE MIR 14 149 -59 316 227 173 18 chr3 24180790 24180900 -203343678 - L2 LINE L2 -4 3309 3183 818 178 0 6 chr3 24180911 24181080 -203343498 + GA-rich Low_complexity Low_complexity 1 168 0 360 236 109 0 chr3 24181080 24181190 -203343388 - MER63 DNA MER1_type -314 748 1 360 296 90 43 chr3 24181203 24181480 -203343098 - L2 LINE L2 -553 2761 2472 298 274 27 14 chr3 24181474 24181547 -203343031 - L2 LINE L2 -62 3210 3137 * 405 243 109 62 chr3 24182124 24182470 -203342108 + MLT1H LTR MaLR 66 549 0 294 100 0 20 chr3 24182583 24182633 -203341945 + LTR8A LTR ERV1 1 49 -678 421 223 107 0 chr3 24182649 24182752 -203341826 + MER50 LTR ERV1 8 121 -613 2021 153 0 0 chr3 24182768 24183062 -203341516 + AluJb SINE Alu 3 296 -16 4206 127 44 3 chr3 24183067 24183750 -203340828 + MER50 LTR ERV1 1 711 -23 274 44 44 0 chr3 24183751 24183796 -203340782 + L1MB4 LINE L1 6133 6179 -1 1339 200 47 75 chr3 24183803 24184359 -203340219 + L1ME1 LINE L1 1849 2388 -4008 622 158 0 0 chr3 24184377 24184472 -203340106 - AluS SINE Alu -218 95 1 1177 223 71 103 chr3 24184564 24184866 -203339712 + MER76 LTR ERV 24 334 -354 1732 57 80 69 chr3 24184866 24185128 -203339450 - AluSc SINE Alu -44 265 1 1177 223 71 103 chr3 24185128 24185485 -203339093 + MER76 LTR ERV 334 662 -26 4931 217 40 32 chr3 24185488 24186373 -203338205 + L1ME1 LINE L1 2397 3274 -2941 2145 120 3 13 chr3 24186373 24186689 -203337889 + AluSq SINE Alu 1 313 0 4931 217 40 32 chr3 24186689 24186928 -203337650 + L1ME1 LINE L1 3274 3510 -2705 1971 129 14 7 chr3 24186928 24187214 -203337364 + AluSx SINE Alu 1 288 -24 4931 217 40 32 chr3 24187214 24187757 -203336821 + L1ME1 LINE L1 3510 4077 -2138 2104 159 36 29 chr3 24187757 24188306 -203336272 + MLT2A2 LTR ERVL 1 554 0 4797 189 77 15 chr3 24188306 24189105 -203335473 + L1ME1 LINE L1 4073 4821 -1414 222 37 0 0 chr3 24189105 24189132 -203335446 + (TG)n Simple_repeat Simple_repeat 2 28 0 4797 189 77 15 chr3 24189132 24190361 -203334217 + L1ME1 LINE L1 4821 6226 -9 4354 132 26 25 chr3 24190370 24190478 -203334100 + L1 LINE L1 3952 4058 -2088 2582 58 0 22 chr3 24190478 24190791 -203333787 + AluY SINE Alu 1 306 -5 4354 132 26 25 chr3 24190791 24191536 -203333042 + L1 LINE L1 4058 4806 -1340 1823 153 68 60 chr3 24191536 24191883 -203332695 + Tigger2a DNA MER2_type 17 369 -2339 740 205 0 0 chr3 24191883 24192010 -203332568 + FLAM_A SINE Alu 1 127 -6 1823 153 68 60 chr3 24192010 24192075 -203332503 + Tigger2a DNA MER2_type 369 432 -2 752 189 26 6 chr3 24192081 24192262 -203332316 + L1MA9 LINE L1 5921 6117 -174 245 186 68 0 chr3 24192325 24192384 -203332194 + L1MA9 LINE L1 6228 6290 -22 1402 133 136 45 chr3 24192932 24193262 -203331316 - MER46B DNA MER2_type -1 235 1 295 327 96 0 chr3 24193649 24193753 -203330825 - L2 LINE L2 -3 3269 3156 280 255 85 0 chr3 24193855 24193961 -203330617 - HAL1b LINE L1 -17 1331 1217 217 353 118 17 chr3 24194218 24194337 -203330241 + MIR SINE MIR 17 147 -61 200 244 0 0 chr3 24194399 24194440 -203330138 - L2 LINE L2 -94 3178 3138 1412 273 26 19 chr3 24194476 24194562 -203330016 + L2 LINE L2 2641 2725 -588 2576 88 40 3 chr3 24194562 24194913 -203329665 - THE1B LTR MaLR 0 364 1 1412 273 26 19 chr3 24194913 24195488 -203329090 + L2 LINE L2 2725 3309 -4 345 191 85 11 chr3 24195535 24195629 -203328949 - MER91C DNA MER1_type -37 103 3 22 0 0 0 chr3 24195670 24195692 -203328886 + AT_rich Low_complexity Low_complexity 1 22 0 425 281 99 53 chr3 24195701 24195951 -203328627 - L1ME4a LINE L1 -56 6065 5828 899 248 14 18 chr3 24195951 24196173 -203328405 + MER58A DNA MER1_type 1 221 -3 425 281 99 53 chr3 24196173 24196395 -203328183 - L1ME4a LINE L1 -293 5828 5571 2122 127 9 3 chr3 24197033 24197356 -203327222 - L1PB3 LINE L1 -1 6153 5829 189 0 0 0 chr3 24198297 24198318 -203326260 + (TTTTTA)n Simple_repeat Simple_repeat 6 26 0 298 143 0 0 chr3 24198739 24198781 -203325797 + MER5B DNA MER1_type 1 42 -136 2536 206 67 28 chr3 24198862 24198993 -203325585 + L1ME2 LINE L1 5455 5579 -755 2401 92 0 16 chr3 24198993 24199308 -203325270 + AluSg SINE Alu 1 310 0 2536 206 67 28 chr3 24199308 24199867 -203324711 + L1ME2 LINE L1 5579 6334 0 481 244 42 34 chr3 24199873 24199992 -203324586 + MER5B DNA MER1_type 59 178 0 2135 221 46 5 chr3 24200470 24201032 -203323546 + L1ME2 LINE L1 5571 6155 -9 3136 188 79 36 chr3 24201386 24202169 -203322409 + L1MB5 LINE L1 4864 5612 -562 5028 81 0 6 chr3 24202169 24202850 -203321728 + L1PA14 LINE L1 5484 6160 -1 3136 188 79 36 chr3 24202850 24203009 -203321569 + L1MB5 LINE L1 5612 5763 -411 2195 78 63 0 chr3 24203009 24203293 -203321285 + AluY SINE Alu 1 302 -9 3136 188 79 36 chr3 24203293 24203601 -203320977 + L1MB5 LINE L1 5763 6165 -9 498 254 123 41 chr3 24203729 24203949 -203320629 + MIR SINE MIR 7 244 -18 9420 180 50 10 chr3 24204052 24205889 -203318689 + L1MA4 LINE L1 13 1921 -5247 * 10691 172 30 78 chr3 24205886 24206138 -203318440 + L1MA4 LINE L1 2749 3011 -4156 2029 123 7 20 chr3 24206138 24206440 -203318138 + AluSg1 SINE Alu 1 298 -11 10691 172 30 78 chr3 24206440 24209443 -203315135 + L1MA4 LINE L1 3011 5794 -1373 3447 133 27 21 chr3 24209443 24210068 -203314510 + L1MA4 LINE L1 6689 7318 -3 406 304 95 0 chr3 24210688 24210836 -203313742 - MIR SINE MIR -48 214 53 229 122 49 0 chr3 24210877 24210918 -203313660 + L1ME LINE L1 5681 5723 -447 24 53 0 0 chr3 24210935 24210973 -203313605 + AT_rich Low_complexity Low_complexity 1 38 0 383 256 81 56 chr3 24211946 24212106 -203312472 + MER5A DNA MER1_type 1 164 -25 181 317 0 0 chr3 24212798 24212839 -203311739 - L3b LINE CR1 -90 1493 1453 215 206 29 0 chr3 24214091 24214159 -203310419 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1619 184 10 36 chr3 24217778 24218082 -203306496 + AluJo SINE Alu 1 296 -16 2524 166 74 19 chr3 24218447 24219043 -203305535 + L1MB8 LINE L1 5545 6173 -5 203 326 122 44 chr3 24219119 24219300 -203305278 - MIR3 SINE MIR -11 197 3 2154 127 0 13 chr3 24219431 24219731 -203304847 - AluJb SINE Alu -16 296 1 2067 126 0 38 chr3 24220272 24220589 -203303989 + AluSx SINE Alu 1 305 -7 665 137 0 0 chr3 24221368 24221470 -203303108 - AluJ/FLAM SINE Alu -210 102 1 21 57 0 0 chr3 24221608 24221643 -203302935 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 24223410 24223448 -203301130 + AT_rich Low_complexity Low_complexity 1 38 0 587 319 114 33 chr3 24224329 24224690 -203299888 + L3 LINE CR1 1117 1506 -71 32 43 0 0 chr3 24226656 24226702 -203297876 + AT_rich Low_complexity Low_complexity 1 46 0 2353 71 10 0 chr3 24226785 24227080 -203297498 - AluSp SINE Alu -15 298 1 180 111 0 0 chr3 24228637 24228664 -203295914 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 847 213 77 19 chr3 24228858 24229065 -203295513 + MER20 DNA MER1_type 1 219 0 292 268 61 0 chr3 24229141 24229223 -203295355 + MIR3 SINE MIR 109 195 -13 336 285 124 54 chr3 24230701 24230887 -203293691 + L1ME4a LINE L1 3913 4111 -2035 360 324 96 36 chr3 24230935 24231185 -203293393 + L1ME4a LINE L1 5333 5597 -2211 266 111 0 0 chr3 24231185 24231221 -203293357 - tRNA-Asp-GAC tRNA tRNA -38 37 2 279 215 25 83 chr3 24231257 24231348 -203293230 + L1ME4a LINE L1 5616 5700 -421 2056 112 10 10 chr3 24231348 24231643 -203292935 - AluSx SINE Alu -17 295 1 279 215 25 83 chr3 24231643 24231672 -203292906 + L1ME4a LINE L1 5700 5729 -392 379 247 153 31 chr3 24231760 24231983 -203292595 + L1ME4a LINE L1 5872 6121 0 284 211 10 39 chr3 24232757 24232861 -203291717 + G-rich Low_complexity Low_complexity 1 101 0 332 274 120 17 chr3 24233954 24234071 -203290507 - L2 LINE L2 -1 3312 3184 560 274 93 102 chr3 24234312 24234521 -203290057 + L1MEd LINE L1 14 223 -5896 326 235 184 20 chr3 24234521 24234619 -203289959 - MER81 DNA DNA 0 114 1 560 274 93 102 chr3 24234619 24235116 -203289462 + L1MEd LINE L1 223 714 -5405 180 0 0 0 chr3 24235268 24235288 -203289290 + (TC)n Simple_repeat Simple_repeat 2 21 0 346 0 47 81 chr3 24235303 24235389 -203289189 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 2281 70 0 14 chr3 24235394 24235679 -203288899 - AluY SINE Alu -26 285 5 332 276 165 25 chr3 24235964 24236254 -203288324 - L1M4c LINE L1 -868 1875 1514 1850 168 0 3 chr3 24237137 24237428 -203287150 + AluJb SINE Alu 7 296 -16 530 279 93 0 chr3 24237478 24237573 -203287005 + MER5B DNA MER1_type 22 107 -71 198 0 0 0 chr3 24237573 24237595 -203286983 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 252 0 0 0 chr3 24237594 24237622 -203286956 + (TA)n Simple_repeat Simple_repeat 1 28 0 530 279 93 0 chr3 24237595 24237666 -203286912 + MER5B DNA MER1_type 107 174 -4 581 205 193 0 chr3 24237681 24237833 -203286745 + MER5A DNA MER1_type 4 189 0 939 287 92 27 chr3 24237907 24238311 -203286267 + LTR67 LTR ERVL 112 541 -16 948 251 62 13 chr3 24239054 24239281 -203285297 - MIR SINE MIR -22 240 3 1834 190 11 16 chr3 24239390 24239753 -203284825 + MLT1A1 LTR MaLR 3 363 -2 1988 134 51 24 chr3 24239757 24240130 -203284448 + MLT1A1-int LTR MaLR 6 388 -1347 785 178 8 0 chr3 24241032 24241161 -203283417 - FLAM_A SINE Alu -2 131 2 503 309 60 36 chr3 24241202 24241732 -203282846 - L1ME LINE L1 -342 5822 5280 2148 123 0 10 chr3 24241747 24242048 -203282530 - AluSx SINE Alu -14 298 1 1579 189 3 53 chr3 24242992 24243196 -203281382 - AluJo SINE Alu -10 302 89 2060 143 35 27 chr3 24243196 24243568 -203281010 + THE1C LTR MaLR 1 375 0 10343 108 23 33 chr3 24243568 24245164 -203279414 + THE1C-int LTR MaLR 1 1580 0 2276 111 24 35 chr3 24245164 24245541 -203279037 + THE1C LTR MaLR 1 373 -2 1579 189 3 53 chr3 24245541 24245652 -203278926 - AluJo SINE Alu -220 92 1 367 233 86 35 chr3 24246224 24246340 -203278238 + MIR SINE MIR 49 170 -92 374 247 217 72 chr3 24246771 24247006 -203277572 - MLT1L LTR MaLR -338 277 9 1909 143 0 10 chr3 24247510 24247803 -203276775 - AluJb SINE Alu -22 290 1 235 204 37 68 chr3 24247975 24248137 -203276441 + L1ME4a LINE L1 5965 6121 0 22 0 0 0 chr3 24248884 24248906 -203275672 + AT_rich Low_complexity Low_complexity 1 22 0 258 226 83 12 chr3 24249510 24249594 -203274984 - MLT1J LTR MaLR -418 93 4 323 331 62 0 chr3 24249719 24249849 -203274729 + MIR3 SINE MIR 59 196 -12 5998 145 21 29 chr3 24251408 24251949 -203272629 + L1MA3 LINE L1 3988 4532 -1773 1950 100 86 0 chr3 24251949 24252241 -203272337 + AluSp SINE Alu 1 315 0 5998 145 21 29 chr3 24252241 24253538 -203271040 + L1MA3 LINE L1 4532 5782 -523 2259 101 0 55 chr3 24253538 24253866 -203270712 + AluSg SINE Alu 1 310 0 5998 145 21 29 chr3 24253866 24254384 -203270194 + L1MA3 LINE L1 5782 6303 -2 313 268 93 111 chr3 24255137 24255417 -203269161 + MLT1L LTR MaLR 237 511 0 828 221 89 36 chr3 24256159 24256440 -203268138 + MLT1I LTR MaLR 108 403 -6 2106 157 52 41 chr3 24257480 24257965 -203266613 + L1MB7 LINE L1 5646 6135 -49 29 28 0 0 chr3 24257971 24258007 -203266571 + AT_rich Low_complexity Low_complexity 1 36 0 599 235 52 13 chr3 24258948 24259101 -203265477 - MLT1I LTR MaLR -247 162 4 1115 196 70 3 chr3 24259113 24259414 -203265164 - MER33 DNA MER1_type -3 321 1 30 45 0 0 chr3 24259483 24259527 -203265051 + AT_rich Low_complexity Low_complexity 1 44 0 399 296 0 9 chr3 24259678 24259786 -203264792 + MIR3 SINE MIR 95 201 -7 2202 123 10 0 chr3 24260857 24261159 -203263419 + AluY SINE Alu 1 305 -6 667 226 65 6 chr3 24262178 24262346 -203262232 + MIR SINE MIR 85 262 0 419 196 9 19 chr3 24262497 24262604 -203261974 - L1MC5 LINE L1 -50 7911 7806 304 293 26 9 chr3 24262642 24262758 -203261820 - L1MB7 LINE L1 -11 6173 6056 372 286 137 31 chr3 24263451 24263612 -203260966 + MIR SINE MIR 79 256 -6 402 232 0 40 chr3 24263646 24263745 -203260833 - LTR16A1 LTR ERVL 0 457 363 709 146 58 102 chr3 24263745 24263951 -203260627 - L1MB8 LINE L1 -96 6082 5886 * 1090 209 0 0 chr3 24263946 24264180 -203260398 - L1MB7 LINE L1 -257 5921 5688 955 231 93 31 chr3 24264206 24264561 -203260017 - LTR16A1 LTR ERVL -80 377 1 197 356 48 20 chr3 24264883 24265029 -203259549 - L2 LINE L2 -453 2861 2712 2412 70 3 26 chr3 24265055 24265367 -203259211 - AluY SINE Alu -6 305 1 361 263 30 10 chr3 24265505 24265604 -203258974 + MIR SINE MIR 40 140 -68 2466 206 25 9 chr3 24266180 24266742 -203257836 - L1MC4a LINE L1 0 7808 7238 495 229 122 15 chr3 24266837 24266968 -203257610 - L2 LINE L2 0 3313 3169 1631 173 74 6 chr3 24267143 24267507 -203257071 - MER114 LTR ERV -259 389 1 619 276 57 10 chr3 24268070 24268262 -203256316 - MIR SINE MIR -11 251 51 2448 69 0 13 chr3 24268595 24268898 -203255680 - AluY SINE Alu -12 299 1 445 188 71 9 chr3 24269127 24269239 -203255339 - MIR SINE MIR -40 222 104 981 223 33 83 chr3 24269247 24269680 -203254898 - MLT1B LTR MaLR 0 390 1 2150 134 47 19 chr3 24269689 24270054 -203254524 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr3 24270566 24270590 -203253988 + AT_rich Low_complexity Low_complexity 1 24 0 1748 120 11 22 chr3 24270594 24270870 -203253708 + AluSp SINE Alu 41 313 0 301 304 0 0 chr3 24271387 24271466 -203253112 - L2 LINE L2 -6 3307 3229 1874 201 39 87 chr3 24271630 24272133 -203252445 + MLT2B1 LTR ERVL 1 478 -42 501 17 0 0 chr3 24272133 24272191 -203252387 + (CA)n Simple_repeat Simple_repeat 2 59 0 1874 201 39 87 chr3 24272191 24272225 -203252353 + MLT2B1 LTR ERVL 478 512 -8 2476 239 55 44 chr3 24272249 24272717 -203251861 + MLT2F LTR ERVL 1 479 -184 1213 189 28 0 chr3 24272717 24272929 -203251649 - MER20 DNA MER1_type -1 218 1 2476 239 55 44 chr3 24272929 24273114 -203251464 + MLT2F LTR ERVL 479 661 -2 505 348 116 23 chr3 24273730 24274238 -203250340 - L2 LINE L2 -19 3294 2733 2042 255 96 7 chr3 24274357 24274954 -203249624 - L2 LINE L2 -344 2970 2321 383 286 17 8 chr3 24274979 24275098 -203249480 + MER34 LTR ERV1 7 126 -416 * 734 221 128 42 chr3 24275069 24275478 -203249100 + LTR48 LTR ERV1 140 780 -7 511 81 14 0 chr3 24275622 24275696 -203248882 - MLT2A2 LTR ERVL 0 453 379 891 234 24 13 chr3 24275783 24276100 -203248478 - MLT2B3 LTR ERVL -54 500 184 2526 131 10 22 chr3 24276101 24276514 -203248064 - L1P LINE L1 -952 5194 4787 7890 156 56 92 chr3 24276520 24278550 -203246028 + LTR48B-int LTR ERV1 4157 6111 -220 2531 47 0 35 chr3 24278550 24278868 -203245710 - AluY SINE Alu -4 307 1 7890 156 56 92 chr3 24278868 24278901 -203245677 + LTR48B-int LTR ERV1 6111 6144 -187 629 231 152 46 chr3 24279000 24279480 -203245098 + LTR48B LTR ERV1 1 633 -11 3192 247 181 16 chr3 24279487 24280678 -203243900 - L2 LINE L2 -1016 2298 912 1830 192 63 63 chr3 24280683 24281177 -203243401 + MLT1D LTR MaLR 5 498 -7 2210 110 41 9 chr3 24281181 24281526 -203243052 - MER46B DNA MER2_type 0 236 6 277 202 71 12 chr3 24281461 24281545 -203243033 + MER46A DNA MER2_type 75 163 -73 * 242 261 33 43 chr3 24281591 24281683 -203242895 - L2 LINE L2 -2477 837 747 317 264 135 20 chr3 24282558 24282706 -203241872 + MIR SINE MIR 79 243 -19 1001 192 0 0 chr3 24283027 24283199 -203241379 - MER3 DNA MER1_type -11 198 27 207 224 155 0 chr3 24283504 24283562 -203241016 - L2 LINE L2 -1 3312 3246 833 246 97 14 chr3 24283617 24284035 -203240543 - L2 LINE L2 -185 3128 2677 1223 219 34 24 chr3 24284072 24284384 -203240194 - MER39 LTR ERV1 -2 687 393 441 163 38 0 chr3 24284395 24284475 -203240103 + MLT1A1 LTR MaLR 3 85 -280 1293 179 0 18 chr3 24284477 24284695 -203239883 + AluJb SINE Alu 5 218 -94 1026 131 11 0 chr3 24284695 24284870 -203239708 - MSTA-int LTR MaLR -1474 177 1 2714 135 51 17 chr3 24284870 24285284 -203239294 - MSTA LTR MaLR 0 428 1 3507 153 39 22 chr3 24285284 24285920 -203238658 + Tigger2 DNA MER2_type 2072 2718 0 664 283 49 29 chr3 24286998 24287242 -203237336 + MIR SINE MIR 14 262 0 1536 113 4 13 chr3 24287248 24287479 -203237099 - MER39 LTR ERV1 -5 702 474 3275 118 63 44 chr3 24287479 24288048 -203236530 + MER4D LTR ERV1 1 580 -323 229 207 138 17 chr3 24288035 24288093 -203236485 - MER39 LTR ERV1 -319 388 324 * 1285 171 147 11 chr3 24288340 24288730 -203235848 + MER39 LTR ERV1 1 432 -221 2396 153 138 4 chr3 24288730 24289181 -203235397 - MER4D LTR ERV1 0 903 393 6466 100 17 10 chr3 24289185 24289977 -203234601 + L1PA16 LINE L1 5105 5906 -260 2808 110 11 3 chr3 24289977 24290349 -203234229 + THE1C LTR MaLR 1 375 0 6466 100 17 10 chr3 24290349 24290611 -203233967 + L1PA16 LINE L1 5906 6165 -1 248 212 222 0 chr3 24290769 24290868 -203233710 + MIR SINE MIR 118 238 -24 372 282 51 8 chr3 24291061 24291178 -203233400 - MIR3 SINE MIR -6 202 81 1927 130 3 7 chr3 24291310 24291641 -203232937 + AluY SINE Alu 1 330 0 1790 203 68 60 chr3 24292276 24292822 -203231756 + MER34C LTR ERV1 36 585 0 226 299 29 51 chr3 24292822 24292959 -203231619 - MIR SINE MIR -116 146 13 2455 86 0 0 chr3 24293680 24293981 -203230597 - AluSq SINE Alu -12 301 1 1813 187 50 22 chr3 24294413 24294777 -203229801 + MLT1A2 LTR MaLR 1 374 0 1028 256 47 18 chr3 24295070 24295347 -203229231 + MLT1I LTR MaLR 125 409 0 398 266 0 11 chr3 24295370 24295464 -203229114 - L2 LINE L2 -1 3271 3179 832 181 67 0 chr3 24295708 24295857 -203228721 + MER5A DNA MER1_type 1 159 -30 303 273 152 15 chr3 24295741 24295873 -203228705 - MER5A DNA MER1_type -23 166 17 * 399 295 98 36 chr3 24296693 24296917 -203227661 - MIR SINE MIR -12 250 13 1166 243 141 17 chr3 24297571 24297933 -203226645 - MLT1I LTR MaLR -1 408 2 322 293 68 8 chr3 24298119 24298252 -203226326 - MIR SINE MIR -20 242 102 382 219 41 41 chr3 24298338 24298461 -203226117 + MER77 LTR ERV1 90 212 -393 689 111 0 10 chr3 24298629 24298728 -203225850 + MER4A LTR ERV1 1 98 -566 1822 130 9 34 chr3 24298728 24299082 -203225496 + MER4A LTR ERV1 261 664 0 13432 122 133 92 chr3 24299085 24302622 -203221956 + MER4A-int LTR ERV1 1 3681 -2917 12916 98 53 11 chr3 24302621 24304610 -203219968 + MER4A-int LTR ERV1 3837 5908 -690 * 45231 36 4 1 chr3 24304610 24310751 -203213827 + L1PA4 LINE L1 1 6155 0 4354 104 51 18 chr3 24310752 24311434 -203213144 + MER4A-int LTR ERV1 5892 6596 -2 510 189 0 11 chr3 24311442 24311537 -203213041 + MER4A LTR ERV1 5 98 -566 1753 147 3 24 chr3 24311537 24311890 -203212688 + MER4A LTR ERV1 261 664 0 511 230 44 122 chr3 24311911 24312272 -203212306 + MER77 LTR ERV1 322 633 -4 300 268 14 0 chr3 24312332 24312403 -203212175 - MIR SINE MIR -150 112 41 1090 178 89 15 chr3 24312536 24312738 -203211840 + MER20 DNA MER1_type 2 218 -1 2118 112 47 78 chr3 24312790 24313175 -203211403 - THE1C LTR MaLR 0 375 3 2713 163 59 17 chr3 24313335 24313889 -203210689 + MER39 LTR ERV1 1 628 -79 3650 79 39 14 chr3 24313889 24314380 -203210198 - L1PA8 LINE L1 -19 6153 5651 2713 163 59 17 chr3 24314380 24314464 -203210114 + MER39 LTR ERV1 628 707 0 1240 255 154 17 chr3 24314504 24314912 -203209666 - LTR16B LTR ERVL 0 464 1 2100 124 79 19 chr3 24315129 24315508 -203209070 + MER34C LTR ERV1 7 408 -177 366 284 17 17 chr3 24316846 24316962 -203207616 - L2 LINE L2 -1 3312 3197 494 234 57 19 chr3 24317457 24317615 -203206963 - LTR16C LTR ERVL 0 491 328 1595 232 102 9 chr3 24318856 24319305 -203205273 + MER90 LTR ERV1 119 609 -5 919 294 88 26 chr3 24319575 24319960 -203204618 + LTR16C LTR ERVL 83 491 0 1513 171 56 0 chr3 24320000 24320172 -203204406 - AluJb SINE Alu 0 308 113 251 27 0 27 chr3 24320172 24320209 -203204369 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1513 171 56 0 chr3 24320209 24320329 -203204249 - AluJb SINE Alu -195 113 1 251 333 90 32 chr3 24320382 24320528 -203204050 + MLT1K LTR MaLR 169 330 -258 1168 251 144 22 chr3 24320528 24320957 -203203621 + MLT1H1 LTR MaLR 3 501 -54 2164 109 3 0 chr3 24320957 24321261 -203203317 + AluSx SINE Alu 1 305 -7 1168 251 144 22 chr3 24321261 24321324 -203203254 + MLT1H1 LTR MaLR 501 555 0 251 333 90 32 chr3 24321324 24321366 -203203212 + MLT1K LTR MaLR 330 368 -220 534 309 102 62 chr3 24321529 24321949 -203202629 - L2 LINE L2 -9 3263 2827 191 341 24 24 chr3 24322076 24322158 -203202420 - L2 LINE L2 -1024 2290 2209 23 33 0 0 chr3 24322506 24322536 -203202042 + AT_rich Low_complexity Low_complexity 1 30 0 803 272 63 48 chr3 24323585 24323979 -203200599 + MLT1L LTR MaLR 216 615 0 289 289 38 113 chr3 24324094 24324360 -203200218 + MIR SINE MIR 17 262 0 22 35 0 0 chr3 24326030 24326059 -203198519 + AT_rich Low_complexity Low_complexity 1 29 0 928 193 17 84 chr3 24326291 24326529 -203198049 + MER58A DNA MER1_type 1 222 -2 2261 97 0 0 chr3 24326669 24326978 -203197600 - AluSx SINE Alu -3 309 1 2159 97 17 3 chr3 24327578 24327877 -203196701 + AluY SINE Alu 1 303 -8 1636 236 49 47 chr3 24328110 24328517 -203196061 - LTR16C LTR ERVL -10 481 74 2313 90 3 3 chr3 24329406 24329718 -203194860 + AluSx SINE Alu 1 312 0 560 219 174 7 chr3 24329888 24330043 -203194535 + MER5A DNA MER1_type 9 189 0 543 53 0 0 chr3 24330301 24330376 -203194202 + (TA)n Simple_repeat Simple_repeat 2 76 0 864 126 0 66 chr3 24330396 24330547 -203194031 - AluJo SINE Alu -171 141 1 213 121 0 0 chr3 24331039 24331072 -203193506 + (GA)n Simple_repeat Simple_repeat 1 33 0 3198 46 5 51 chr3 24331503 24331935 -203192643 - L1PA8 LINE L1 -10 6162 5751 24 0 0 0 chr3 24333100 24333124 -203191454 + AT_rich Low_complexity Low_complexity 1 24 0 975 175 45 35 chr3 24333362 24333562 -203191016 + MER3 DNA MER1_type 8 209 0 294 200 0 0 chr3 24333519 24333569 -203191009 - MER3 DNA MER1_type -119 90 41 * 2164 119 0 0 chr3 24334166 24334468 -203190110 - AluSx SINE Alu -9 303 2 2194 116 139 16 chr3 24336104 24336485 -203188093 + MSTA LTR MaLR 1 428 0 1541 152 16 107 chr3 24336488 24336762 -203187816 - L1MB7 LINE L1 -38 6146 5848 1739 121 0 43 chr3 24336762 24337043 -203187535 - AluSx SINE Alu -14 298 30 1541 152 16 107 chr3 24337043 24337104 -203187474 - L1MB7 LINE L1 -336 5848 5783 2081 123 7 0 chr3 24337104 24337412 -203187166 - AluSg SINE Alu 0 310 1 1541 152 16 107 chr3 24337412 24337425 -203187153 - L1MB7 LINE L1 -401 5783 5770 2421 147 29 44 chr3 24337425 24337493 -203187085 - L1MB2 LINE L1 -7 6164 6097 2240 147 86 15 chr3 24337493 24337889 -203186689 + MSTB LTR MaLR 1 424 -2 2202 94 3 3 chr3 24337889 24338196 -203186382 + AluSq SINE Alu 1 307 -6 2421 147 29 44 chr3 24338196 24338602 -203185976 - L1MB2 LINE L1 -72 6099 5696 1541 152 16 107 chr3 24338602 24338633 -203185945 - L1MB7 LINE L1 -413 5771 5800 1804 156 3 3 chr3 24338833 24339134 -203185444 + AluSx SINE Alu 1 301 -11 1723 255 59 60 chr3 24340602 24340816 -203183762 - L1MEd LINE L1 -5351 768 555 853 237 17 11 chr3 24340816 24340993 -203183585 + MER45A DNA AcHobo 1 178 0 1723 255 59 60 chr3 24340993 24341546 -203183032 - L1MEd LINE L1 -5564 555 2 214 191 0 0 chr3 24341615 24341657 -203182921 + T-rich Low_complexity Low_complexity 1 42 0 352 294 73 37 chr3 24341687 24341823 -203182755 - MIR SINE MIR -112 150 10 269 324 105 0 chr3 24342503 24342608 -203181970 + MIR3 SINE MIR 90 205 -3 2112 99 20 3 chr3 24343718 24344011 -203180567 + AluSx SINE Alu 1 298 -14 711 183 0 0 chr3 24394011 24394137 -203130441 + MSTD-int LTR MaLR 1610 1735 0 1298 211 121 47 chr3 24394137 24394187 -203130391 + MSTD LTR MaLR 1 46 -350 2436 80 0 10 chr3 24394187 24394501 -203130077 + AluY SINE Alu 1 311 0 1298 211 121 47 chr3 24394501 24394815 -203129763 + MSTD LTR MaLR 46 392 -4 188 386 0 0 chr3 24395283 24395353 -203129225 + L2 LINE L2 3203 3272 0 29 0 0 0 chr3 24396045 24396074 -203128504 + AT_rich Low_complexity Low_complexity 1 29 0 699 126 0 0 chr3 24397513 24397616 -203126962 - AluSp/q SINE Alu -1 312 210 1390 190 45 77 chr3 24398397 24398848 -203125730 - MER4C-int LTR ERV1 -1603 3277 2111 401 225 49 28 chr3 24398872 24399014 -203125564 - MER4C-int LTR ERV1 -1937 2943 2799 1020 210 88 16 chr3 24399016 24399261 -203125317 + LTR49-int LTR ERV1 1608 3537 -2794 3301 159 52 80 chr3 24399267 24399978 -203124600 + LTR8 LTR ERV1 1 691 0 295 254 0 14 chr3 24399979 24400050 -203124528 - MER4C-int LTR ERV1 -3930 2401 2332 388 210 0 25 chr3 24400087 24400168 -203124410 - MER4C-int LTR ERV1 -4187 2144 2066 1338 156 75 120 chr3 24400169 24400649 -203123929 - MER4C-int LTR ERV1 -4423 1908 1372 459 186 57 40 chr3 24400739 24400863 -203123715 - MER4C-int LTR ERV1 -4918 1413 1288 273 213 197 0 chr3 24400868 24400929 -203123649 - tRNA-Glu-GAG tRNA tRNA 0 75 3 643 136 136 15 chr3 24400945 24401131 -203123447 - MER4C-int LTR ERV1 -5051 1280 994 200 128 0 26 chr3 24401325 24401364 -203123214 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 998 202 120 28 chr3 24401391 24401771 -203122807 - MER4C-int LTR ERV1 -6108 490 1 1138 210 46 118 chr3 24401774 24402275 -203122303 - MER4C LTR ERV1 0 465 1 1186 214 5 0 chr3 24402275 24402485 -203122093 + LTR39 LTR ERV1 572 782 -1 463 229 31 104 chr3 24402701 24402893 -203121685 - MER5B DNA MER1_type 0 178 1 324 240 36 81 chr3 24403886 24404107 -203120471 - L1MC4 LINE L1 -1 8041 7831 2693 157 26 32 chr3 24404151 24404648 -203119930 - MLT1D LTR MaLR 0 505 12 982 234 65 87 chr3 24404740 24405189 -203119389 - L2 LINE L2 -1136 2178 1740 503 281 82 0 chr3 24406313 24406448 -203118130 + L3 LINE CR1 1061 1206 -371 318 344 89 14 chr3 24407103 24407472 -203117106 + L1MB8 LINE L1 4904 5299 -847 896 316 72 31 chr3 24407571 24407989 -203116589 + LTR16C LTR ERVL 57 491 0 340 328 81 56 chr3 24407989 24408076 -203116502 + L1MB8 LINE L1 5332 5415 -755 2453 84 0 0 chr3 24408076 24408384 -203116194 + AluY SINE Alu 1 308 -3 340 328 81 56 chr3 24408384 24408616 -203115962 + L1MB8 LINE L1 5415 5659 -511 3050 274 160 30 chr3 24408663 24410477 -203114101 + L2 LINE L2 1261 3313 0 310 261 40 62 chr3 24410487 24410705 -203113873 + L1MB8 LINE L1 5671 5885 -293 26 50 0 0 chr3 24410778 24410818 -203113760 + AT_rich Low_complexity Low_complexity 1 40 0 388 272 22 11 chr3 24411297 24411389 -203113189 - MIR SINE MIR -162 100 8 236 254 16 16 chr3 24411672 24411735 -203112843 - L2 LINE L2 -31 3241 3179 2843 10 0 0 chr3 24411985 24412292 -203112286 + AluYa5 SINE Alu 1 307 -4 3824 91 16 0 chr3 24412718 24413226 -203111352 - L1PA13 LINE L1 0 6814 6299 583 35 306 0 chr3 24413226 24413311 -203111267 - L1PA8 LINE L1 -28 6144 6034 22133 183 33 11 chr3 24413411 24419068 -203105510 - L1PA13 LINE L1 -550 6269 339 12137 144 7 20 chr3 24419066 24420944 -203103634 - L1PA12 LINE L1 -5577 2004 152 * 2018 147 3 0 chr3 24421518 24421818 -203102760 + AluJb SINE Alu 1 301 -11 291 163 20 0 chr3 24422059 24422108 -203102470 - MLT1L LTR MaLR -347 268 219 938 194 77 28 chr3 24422493 24422740 -203101838 + MIR SINE MIR 4 262 0 21 36 0 0 chr3 24422838 24422866 -203101712 + AT_rich Low_complexity Low_complexity 1 28 0 186 267 13 93 chr3 24423086 24423161 -203101417 - MIR3 SINE MIR -51 157 89 1089 171 6 6 chr3 24423536 24423712 -203100866 - MER5B DNA MER1_type -2 176 1 295 390 0 0 chr3 24424552 24424688 -203099890 - MER117 DNA MER1_type -33 164 29 230 0 33 0 chr3 24424768 24424798 -203099780 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 284 224 206 19 chr3 24424828 24424935 -203099643 - L2 LINE L2 -38 3275 3149 253 325 77 0 chr3 24425539 24425656 -203098922 - L2 LINE L2 -491 2823 2698 369 0 0 0 chr3 24425717 24425758 -203098820 + (CA)n Simple_repeat Simple_repeat 2 42 0 378 165 0 51 chr3 24425785 24425864 -203098714 + MER53 DNA DNA 115 189 0 209 291 135 14 chr3 24425903 24426051 -203098527 - L2 LINE L2 -735 2579 2414 1835 174 2 84 chr3 24426499 24426902 -203097676 + MLT1A2 LTR MaLR 1 370 -4 1294 213 10 43 chr3 24426996 24427296 -203097282 - AluJo SINE Alu -22 290 1 2203 150 6 12 chr3 24427712 24428053 -203096525 - MER44D DNA MER2_type 0 609 1 488 253 198 106 chr3 24428060 24428569 -203096009 - MLT1K LTR MaLR -31 557 2 350 286 156 5 chr3 24428631 24428855 -203095723 + L1MC4a LINE L1 5672 5929 -1879 26 88 0 0 chr3 24428972 24429040 -203095538 + AT_rich Low_complexity Low_complexity 1 68 0 1237 187 18 7 chr3 24429041 24429314 -203095264 - L1M4 LINE L1 -914 5232 4957 1213 261 90 46 chr3 24429482 24429941 -203094637 + MER77 LTR ERV1 140 596 -9 1522 275 9 40 chr3 24430002 24430456 -203094122 + MER77-int LTR ERV1 2 441 -3750 401 304 29 22 chr3 24430425 24430563 -203094015 + MER21-int LTR ERV1 298 436 -3755 * 2293 104 0 3 chr3 24431110 24431407 -203093171 - AluSg SINE Alu -14 296 1 2680 141 57 5 chr3 24432210 24432649 -203091929 - MER31A LTR ERV1 -23 462 1 324 327 9 0 chr3 24433160 24433270 -203091308 - L2 LINE L2 0 3272 3162 340 55 0 0 chr3 24433326 24433381 -203091197 - L1MB4 LINE L1 0 6180 6126 2464 57 0 7 chr3 24433381 24433674 -203090904 - L1PA7 LINE L1 0 6154 5860 229 214 0 0 chr3 24433791 24433833 -203090745 + MER58 DNA MER1_type 233 274 -2146 610 274 42 18 chr3 24434070 24434238 -203090340 + MIR SINE MIR 21 192 -70 261 61 0 0 chr3 24434323 24434356 -203090222 - MER58 DNA MER1_type -8 2412 2380 1612 173 77 14 chr3 24434454 24434980 -203089598 + MER21B LTR ERV1 1 580 -283 1117 148 44 0 chr3 24434995 24435177 -203089401 + MER21A LTR ERV1 725 914 -17 466 250 60 0 chr3 24435353 24435469 -203089109 - MER5C DNA MER1_type -200 124 2 3003 192 144 8 chr3 24435888 24436590 -203087988 - LTR1B LTR ERV1 0 826 30 24974 49 2 4 chr3 24437844 24441156 -203083422 - L1PA5 LINE L1 0 6154 2841 2393 86 3 0 chr3 24441156 24441458 -203083120 - AluY SINE Alu -8 303 1 24974 49 2 4 chr3 24441458 24441892 -203082686 - L1PA5 LINE L1 -3313 2841 2408 539 291 36 31 chr3 24442229 24442425 -203082153 - L2 LINE L2 0 3313 3117 1571 277 82 21 chr3 24442704 24443177 -203081401 + MLT1J LTR MaLR 8 509 -2 1675 61 17 26 chr3 24443394 24443624 -203080954 - L1PA10 LINE L1 -4 6164 5937 196 270 0 68 chr3 24443626 24443700 -203080878 - L2 LINE L2 -5 3308 3240 273 255 156 28 chr3 24444384 24444525 -203080053 - MIR SINE MIR -13 249 91 185 264 22 88 chr3 24444574 24444665 -203079913 + MIR3 SINE MIR 95 179 -29 6170 122 192 97 chr3 24444755 24446305 -203078273 - pTR5 LTR ERV1 0 2438 741 953 318 73 19 chr3 24446517 24446929 -203077649 - MLT1J LTR MaLR -75 436 3 1631 176 67 10 chr3 24446994 24447306 -203077272 + Tigger1 DNA MER2_type 1 330 -2088 1254 216 42 52 chr3 24447306 24447834 -203076744 - PABL_B LTR ERV1 0 667 1 37305 200 18 10 chr3 24447922 24453515 -203071063 - PABL_B-int LTR ERV1 -64 7058 1342 2382 94 3 0 chr3 24453515 24453812 -203070766 - AluSp SINE Alu -15 298 1 37305 200 18 10 chr3 24453812 24455142 -203069436 - PABL_B-int LTR ERV1 -5780 1342 23 1218 222 32 64 chr3 24455155 24455493 -203069085 - PABL_B LTR ERV1 0 667 210 2148 128 3 0 chr3 24455493 24455805 -203068773 + AluSp SINE Alu 1 313 0 1218 222 32 64 chr3 24455805 24456009 -203068569 - PABL_B LTR ERV1 -457 210 1 13345 121 25 22 chr3 24456009 24458091 -203066487 + Tigger1 DNA MER2_type 327 2416 -2 2061 116 3 28 chr3 24458285 24458604 -203065974 + AluSx SINE Alu 1 311 -1 16793 162 43 9 chr3 24458756 24461707 -203062871 + L1MC3 LINE L1 4 7355 -408 13985 166 24 12 chr3 24461705 24463094 -203061484 + L1MA2 LINE L1 3208 4578 -2987 * 2429 74 0 10 chr3 24463094 24463390 -203061188 + AluY SINE Alu 1 293 -18 13985 166 24 12 chr3 24463390 24465038 -203059540 + L1MA2 LINE L1 4578 6286 -1279 2361 153 48 15 chr3 24465042 24465442 -203059136 - MSTA LTR MaLR -14 414 2 3642 142 10 9 chr3 24465443 24465825 -203058753 + L1MA2 LINE L1 6286 6666 -1057 2476 118 131 8 chr3 24465825 24466206 -203058372 + MSTA LTR MaLR 1 428 0 3642 142 10 9 chr3 24466206 24466751 -203057827 + L1MA2 LINE L1 6666 7209 -514 1901 103 17 21 chr3 24466754 24467045 -203057533 + L1MA2 LINE L1 7434 7723 0 529 277 25 25 chr3 24467064 24467223 -203057355 + L1ME1 LINE L1 5919 6077 -89 1120 260 40 62 chr3 24467257 24467549 -203057029 + L1M4 LINE L1 3212 3509 -2637 948 233 0 0 chr3 24467549 24467712 -203056866 + FAM SINE Alu 1 163 -12 1120 260 40 62 chr3 24467712 24468085 -203056493 + L1M4 LINE L1 3509 3863 -2283 606 14 0 0 chr3 24468087 24468158 -203056420 + (TA)n Simple_repeat Simple_repeat 1 71 0 348 171 0 0 chr3 24468158 24468228 -203056350 - AluY SINE Alu -22 279 210 301 252 36 36 chr3 24468261 24468400 -203056178 + L1M4 LINE L1 3896 4034 -2112 594 0 0 0 chr3 24468514 24468580 -203055998 + (TA)n Simple_repeat Simple_repeat 2 67 0 550 107 0 0 chr3 24468580 24468655 -203055923 - AluY SINE Alu -27 284 210 966 273 83 44 chr3 24468667 24469186 -203055392 + L1ME3A LINE L1 3875 4431 -1715 811 208 0 0 chr3 24469186 24469316 -203055262 + FLAM_A SINE Alu 1 130 -3 966 273 83 44 chr3 24469316 24469517 -203055061 + L1ME3A LINE L1 4431 4623 -1523 1202 110 6 0 chr3 24469530 24469694 -203054884 - L1MA1 LINE L1 -7 6295 6131 662 264 70 15 chr3 24469696 24470195 -203054383 + L1ME3A LINE L1 4967 5462 -702 3797 47 7 2 chr3 24470201 24470647 -203053931 - LTR7 LTR ERV1 -2 448 1 2557 86 39 16 chr3 24470647 24471030 -203053548 - HERVH LTR ERV1 0 7713 7322 1435 120 18 5 chr3 24471028 24471245 -203053333 - HERVH LTR ERV1 -1894 5819 5600 * 4479 137 0 1 chr3 24471246 24471909 -203052669 - HERVH LTR ERV1 -2564 5149 4488 3349 121 4 6 chr3 24471911 24472414 -203052164 - HERVH LTR ERV1 -3720 3993 3492 907 149 20 0 chr3 24472404 24472552 -203052026 - HERVH LTR ERV1 -4423 3290 3140 * 20682 89 11 28 chr3 24472538 24475582 -203048996 - HERVH LTR ERV1 -4721 2992 1 3462 42 10 105 chr3 24475584 24476079 -203048499 - LTR7 LTR ERV1 -2 448 1 1062 282 40 49 chr3 24476085 24476532 -203048046 + L1ME3A LINE L1 5495 5937 -233 575 72 0 24 chr3 24476534 24476617 -203047961 + L1MA4 LINE L1 6214 6294 -6 4243 160 18 47 chr3 24476633 24477527 -203047051 + L1MB8 LINE L1 5299 6178 0 27 0 0 0 chr3 24477709 24477736 -203046842 + AT_rich Low_complexity Low_complexity 1 27 0 435 271 7 50 chr3 24477838 24477978 -203046600 + L1ME LINE L1 5506 5639 -482 1055 249 97 52 chr3 24477979 24478404 -203046174 + MLT1H LTR MaLR 98 541 -8 328 267 20 0 chr3 24478408 24478509 -203046069 + L1ME LINE L1 5647 5749 -372 904 272 204 28 chr3 24478511 24479011 -203045567 + MLT1K LTR MaLR 1 588 0 4779 192 15 5 chr3 24479654 24480898 -203043680 + L1MB5 LINE L1 4903 6159 -15 270 0 0 0 chr3 24480901 24480931 -203043647 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1090 168 101 10 chr3 24480943 24481151 -203043427 + AluJo SINE Alu 85 311 -1 763 184 0 0 chr3 24481160 24481269 -203043309 - FLAM_A SINE Alu -33 109 1 350 239 55 9 chr3 24481416 24481525 -203043053 + L1ME4a LINE L1 6007 6120 -1 343 259 44 37 chr3 24481571 24481706 -203042872 + MLT1J1 LTR MaLR 21 156 -290 954 241 98 8 chr3 24481710 24481955 -203042623 - MLT1G1 LTR MaLR -7 588 322 1738 166 23 13 chr3 24483096 24483404 -203041174 + L1M3 LINE L1 5329 5639 -541 * 32147 92 13 9 chr3 24483400 24486054 -203038524 - L1PA8 LINE L1 0 6487 3847 269 26 26 0 chr3 24486054 24486092 -203038486 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 32147 92 13 9 chr3 24486092 24489144 -203035434 - L1PA8 LINE L1 -2640 3847 749 772 45 0 0 chr3 24489153 24489242 -203035336 + L1P3 LINE L1 5539 5627 -545 997 223 125 60 chr3 24489355 24489672 -203034906 - MSTD LTR MaLR -4 392 46 2571 70 0 6 chr3 24489672 24489985 -203034593 - AluY SINE Alu 0 311 1 997 223 125 60 chr3 24489985 24490035 -203034543 - MSTD LTR MaLR -350 46 1 6260 227 84 43 chr3 24490035 24490186 -203034392 - MLT1B-int LTR MaLR 0 1735 1592 1800 140 87 34 chr3 24490186 24490542 -203034036 + THE1C LTR MaLR 1 375 0 6260 227 84 43 chr3 24490542 24492052 -203032526 - MLT1B-int LTR MaLR -143 1592 6 816 128 16 8 chr3 24492060 24492185 -203032393 + THE1C LTR MaLR 250 375 0 240 259 17 0 chr3 24492235 24492293 -203032285 - MER81 DNA DNA 0 114 56 1769 250 53 50 chr3 24492369 24492913 -203031665 + MLT1H1 LTR MaLR 1 546 -9 2193 149 25 63 chr3 24493552 24494134 -203030444 + MER39 LTR ERV1 1 707 0 3496 200 103 43 chr3 24495492 24496481 -203028097 + L1MC4 LINE L1 6995 8042 0 1792 257 29 60 chr3 24496491 24497069 -203027509 + L1MC4a LINE L1 5193 5230 -916 2121 151 48 13 chr3 24497069 24497446 -203027132 - MLT1B LTR MaLR 0 390 1 1792 257 29 60 chr3 24497446 24497611 -203026967 + L1MC4a LINE L1 5230 5399 -747 261 83 0 0 chr3 24497622 24497658 -203026920 + (TG)n Simple_repeat Simple_repeat 2 37 0 230 279 0 23 chr3 24497658 24497744 -203026834 + (TA)n Simple_repeat Simple_repeat 2 85 0 519 260 115 72 chr3 24498074 24498314 -203026264 - MLT1L LTR MaLR -8 503 320 369 0 0 0 chr3 24498314 24498355 -203026223 + (CA)n Simple_repeat Simple_repeat 1 41 0 519 260 115 72 chr3 24498355 24498565 -203026013 - MLT1L LTR MaLR -191 320 120 1034 253 180 13 chr3 24498975 24499359 -203025219 - LTR16C LTR ERVL 0 491 44 536 261 43 74 chr3 24499371 24499601 -203024977 - LTR16C LTR ERVL -217 274 52 439 223 33 25 chr3 24499784 24499905 -203024673 - MIR SINE MIR -44 218 97 1270 303 20 15 chr3 24500390 24500793 -203023785 - MLT1I LTR MaLR -4 405 1 337 296 96 9 chr3 24501267 24501382 -203023196 - L2 LINE L2 -9 3263 3139 1573 236 149 2 chr3 24501394 24501822 -203022756 - MLT1J LTR MaLR 0 511 21 519 311 98 50 chr3 24501865 24502405 -203022173 - L2 LINE L2 -251 3021 2458 25 0 0 0 chr3 24502632 24502657 -203021921 + AT_rich Low_complexity Low_complexity 1 25 0 182 241 139 25 chr3 24503011 24503090 -203021488 - L2 LINE L2 -2 3270 3183 678 224 76 33 chr3 24504392 24504699 -203019879 - LTR16C LTR ERVL 0 491 81 536 286 60 16 chr3 24504781 24504966 -203019612 + MIR SINE MIR 70 262 0 192 284 121 79 chr3 24505018 24505208 -203019370 - MIR3 SINE MIR -6 202 5 298 215 182 8 chr3 24505276 24505397 -203019181 + MER117 DNA MER1_type 4 145 -52 3351 73 49 9 chr3 24505575 24506002 -203018576 + MLT2A1 LTR ERVL 1 444 0 798 328 48 7 chr3 24506211 24506750 -203017828 + L1M4 LINE L1 4547 5107 -1039 270 291 153 66 chr3 24506751 24506992 -203017586 - LTR16B LTR ERVL -202 262 1 1011 177 117 53 chr3 24507385 24507684 -203016894 + MLT1H LTR MaLR 48 365 -184 355 221 19 48 chr3 24507687 24507791 -203016787 + MLT1H LTR MaLR 495 595 0 183 340 0 0 chr3 24507860 24507910 -203016668 - L2 LINE L2 0 3272 3223 * 803 270 115 4 chr3 24507876 24508102 -203016476 - MIR SINE MIR -10 252 2 353 255 45 51 chr3 24508464 24508621 -203015957 - L2 LINE L2 0 3313 3158 419 0 20 0 chr3 24509399 24509450 -203015128 + (TG)n Simple_repeat Simple_repeat 2 53 0 421 273 62 0 chr3 24509631 24509759 -203014819 + MIR3 SINE MIR 10 145 -63 1147 227 9 0 chr3 24510242 24510458 -203014120 - MER20 DNA MER1_type 0 219 2 818 252 40 24 chr3 24510491 24510741 -203013837 - LTR16C LTR ERVL -14 477 224 231 209 60 30 chr3 24513402 24513469 -203011109 - L2 LINE L2 -18 3295 3227 598 244 40 23 chr3 24514228 24514404 -203010174 + MIR SINE MIR 84 262 0 21 0 0 0 chr3 24514514 24514535 -203010043 + AT_rich Low_complexity Low_complexity 1 21 0 478 262 161 33 chr3 24514586 24515007 -203009571 - MLT1H1 LTR MaLR -4 545 20 289 266 101 0 chr3 24515030 24515109 -203009469 - MIR SINE MIR -160 102 16 942 255 174 27 chr3 24515161 24515665 -203008913 - MLT1G LTR MaLR -38 552 1 4508 120 38 10 chr3 24515708 24516399 -203008179 - L1MC1 LINE L1 0 6333 5624 248 250 59 0 chr3 24516486 24516554 -203008024 - MER116 DNA Mariner -8 72 1 305 232 14 0 chr3 24516555 24516624 -203007954 - MER113 DNA MER1_type? -448 73 4 225 65 0 0 chr3 24516721 24516752 -203007826 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2232 125 0 3 chr3 24518114 24518427 -203006151 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 24518673 24518698 -203005880 + AT_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr3 24519079 24519125 -203005453 + AT_rich Low_complexity Low_complexity 1 46 0 3154 198 29 17 chr3 24519648 24520309 -203004269 + L1MC3 LINE L1 7099 7767 -18 363 301 122 8 chr3 24520566 24520689 -203003889 - MIR3 SINE MIR -57 151 15 23 0 0 0 chr3 24521610 24521633 -203002945 + AT_rich Low_complexity Low_complexity 1 23 0 571 264 59 27 chr3 24521779 24522071 -203002507 - MLT1I LTR MaLR -2 407 73 236 317 17 0 chr3 24522184 24522244 -203002334 - L2 LINE L2 -55 3217 3157 204 40 0 0 chr3 24522992 24523017 -203001561 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1190 199 49 8 chr3 24523035 24523281 -203001297 + MIR SINE MIR 6 261 -1 622 260 173 5 chr3 24523385 24523593 -203000985 + MIR SINE MIR 4 246 -16 183 229 38 127 chr3 24523812 24523969 -203000609 - L2 LINE L2 -457 2857 2715 860 254 75 13 chr3 24524051 24524279 -203000299 - MIR SINE MIR 0 262 21 707 227 51 23 chr3 24524668 24524844 -202999734 + MIR SINE MIR 34 214 -48 2087 174 21 9 chr3 24524922 24525094 -202999484 - L1MA10 LINE L1 -3 6331 6163 198 0 0 0 chr3 24525094 24525116 -202999462 + (TG)n Simple_repeat Simple_repeat 2 23 0 2087 174 21 9 chr3 24525116 24525363 -202999215 - L1MA10 LINE L1 -171 6163 5907 858 184 0 19 chr3 24526588 24526746 -202997832 + MER5B DNA MER1_type 6 160 -18 826 258 43 19 chr3 24526746 24526955 -202997623 - MIR SINE MIR -34 228 15 302 291 57 28 chr3 24527396 24527537 -202997041 + MIR3 SINE MIR 12 156 -52 998 239 46 18 chr3 24527558 24527838 -202996740 + MER102b DNA MER1_type 34 321 -20 520 115 58 0 chr3 24528648 24528735 -202995843 - L1MB2 LINE L1 -8 6163 6072 299 299 18 69 chr3 24528860 24529077 -202995501 - L1MB2 LINE L1 -1971 5837 5632 749 248 135 9 chr3 24529204 24529426 -202995152 + MIR SINE MIR 13 262 0 812 188 0 0 chr3 24530248 24530381 -202994197 + FLAM_A SINE Alu 1 133 0 488 311 71 14 chr3 24530740 24530952 -202993626 - L2 LINE L2 -15 3298 3075 4083 208 85 31 chr3 24530981 24531505 -202993073 + L1MB7 LINE L1 4206 4700 -1519 2044 118 25 0 chr3 24531505 24531784 -202992794 - AluSx SINE Alu -26 286 1 4083 208 85 31 chr3 24531784 24533162 -202991416 + L1MB7 LINE L1 4700 6219 0 246 62 0 0 chr3 24533162 24533194 -202991384 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 697 301 94 37 chr3 24533238 24533744 -202990834 - L2 LINE L2 -189 3124 2601 350 338 8 60 chr3 24533969 24534102 -202990476 + L2 LINE L2 3127 3252 -20 402 151 27 14 chr3 24534220 24534293 -202990285 + MLT1J2 LTR MaLR 67 140 -310 349 179 0 83 chr3 24535506 24535590 -202988988 - MER69 DNA AcHobo -100 77 1 306 254 67 52 chr3 24535683 24535817 -202988761 - MIR SINE MIR -76 186 51 183 80 0 0 chr3 24536251 24536276 -202988302 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 212 286 0 48 chr3 24536277 24536340 -202988238 - L2 LINE L2 -15 3257 3198 1030 155 7 0 chr3 24536410 24536565 -202988013 - FAM SINE Alu -19 166 11 1559 209 22 32 chr3 24536576 24536977 -202987601 + MLT2C1 LTR ERVL 1 397 0 21 0 0 0 chr3 24538305 24538326 -202986252 + AT_rich Low_complexity Low_complexity 1 21 0 2720 169 58 80 chr3 24538442 24539146 -202985432 + LTR8 LTR ERV1 1 689 -2 207 278 56 14 chr3 24541366 24541438 -202983140 + MIR SINE MIR 16 90 -172 233 352 75 6 chr3 24541903 24542062 -202982516 + L1ME4a LINE L1 5395 5564 -557 390 228 134 39 chr3 24542132 24542364 -202982214 + L1ME4a LINE L1 5565 5818 -303 320 267 0 22 chr3 24542390 24542480 -202982098 - MIR SINE MIR -4 258 171 180 0 0 0 chr3 24542599 24542619 -202981959 + (A)n Simple_repeat Simple_repeat 1 20 0 474 148 0 83 chr3 24542642 24542750 -202981828 - Tigger7 DNA MER2_type 0 2487 2389 * 1070 241 72 0 chr3 24542748 24542997 -202981581 - Tigger7 DNA MER2_type -2220 267 1 234 212 192 10 chr3 24543191 24543290 -202981288 + L1ME4a LINE L1 5981 6097 -24 236 271 143 76 chr3 24544315 24544525 -202980053 - L2 LINE L2 -32 3240 3017 554 245 168 13 chr3 24544538 24544693 -202979885 - MER5A DNA MER1_type -2 187 9 201 282 13 51 chr3 24544694 24544772 -202979806 - L2 LINE L2 -252 3020 2946 208 219 158 79 chr3 24545103 24545217 -202979361 + L2 LINE L2 3150 3272 0 841 283 53 0 chr3 24545256 24545500 -202979078 + MIR SINE MIR 6 262 0 798 141 88 35 chr3 24546086 24546256 -202978322 - MER3 DNA MER1_type 0 209 31 192 321 99 29 chr3 24546813 24547056 -202977522 - L2 LINE L2 -555 2759 2500 361 167 269 0 chr3 24547497 24547605 -202976973 + MIR SINE MIR 120 256 -6 379 258 127 9 chr3 24549037 24549250 -202975328 - L1ME4a LINE L1 -28 6093 5856 1239 259 88 5 chr3 24549286 24549683 -202974895 - LTR16A LTR ERVL 0 450 21 390 290 169 11 chr3 24549811 24549994 -202974584 - MIR SINE MIR -17 245 34 22 0 0 0 chr3 24550606 24550628 -202973950 + AT_rich Low_complexity Low_complexity 1 22 0 230 257 14 14 chr3 24551098 24551168 -202973410 + CT-rich Low_complexity Low_complexity 1 70 0 188 311 0 0 chr3 24551442 24551487 -202973091 + L2 LINE L2 3258 3302 -11 276 198 154 11 chr3 24552827 24552918 -202971660 - MER112 DNA MER1_type -7 253 150 2376 104 3 0 chr3 24552920 24553227 -202971351 + AluSx SINE Alu 1 308 -4 258 214 265 10 chr3 24554186 24554284 -202970294 + MER5A DNA MER1_type 44 166 -23 * 573 208 0 0 chr3 24554209 24554310 -202970268 - MER5A DNA MER1_type -80 109 9 26 0 0 0 chr3 24554481 24554507 -202970071 + AT_rich Low_complexity Low_complexity 1 26 0 189 205 26 0 chr3 24554621 24554660 -202969918 - L2 LINE L2 0 3313 3274 270 266 11 0 chr3 24555034 24555045 -202969533 - L1MA10 LINE L1 -5 6329 6319 2701 210 64 29 chr3 24555045 24556329 -202968249 - L1ME2 LINE L1 -9 6155 4834 336 291 47 17 chr3 24557548 24557720 -202966858 - L1ME4a LINE L1 -1 6120 5944 33 25 0 0 chr3 24557886 24557926 -202966652 + AT_rich Low_complexity Low_complexity 1 40 0 646 185 64 36 chr3 24558034 24558268 -202966310 + MER106B DNA MER1_type 1 1059 0 4561 169 41 5 chr3 24558736 24559964 -202964614 - L1MB7 LINE L1 -7 6177 4903 234 250 50 0 chr3 24560472 24560532 -202964046 - L2 LINE L2 -1391 1923 1861 800 158 148 10 chr3 24560536 24560732 -202963846 + MLT2C1 LTR ERVL 5 227 -170 398 228 22 0 chr3 24560730 24560822 -202963756 + MLT2C1 LTR ERVL 331 424 -40 * 211 259 23 38 chr3 24560822 24560953 -202963625 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 * 327 201 57 13 chr3 24560859 24561018 -202963560 + (TA)n Simple_repeat Simple_repeat 1 166 0 519 17 0 0 chr3 24561018 24561078 -202963500 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 23 33 0 0 chr3 24561242 24561272 -202963306 + AT_rich Low_complexity Low_complexity 1 30 0 332 267 163 75 chr3 24562423 24562730 -202961848 - L1MC4a LINE L1 -1754 6054 5721 2149 105 10 0 chr3 24562741 24563035 -202961543 + AluSx SINE Alu 6 302 -10 245 263 77 86 chr3 24563201 24563410 -202961168 - L2 LINE L2 -166 3106 2900 568 321 101 17 chr3 24563437 24563783 -202960795 - L2 LINE L2 -468 2846 2472 519 286 106 19 chr3 24563870 24564231 -202960347 - L1MC4a LINE L1 -455 5666 5274 910 186 25 101 chr3 24565862 24566099 -202958479 - MER20 DNA MER1_type 0 219 1 847 173 98 0 chr3 24569423 24569623 -202954955 + L1PA16 LINE L1 5968 6184 0 381 284 86 41 chr3 24569646 24569843 -202954735 + MIR SINE MIR 51 256 -6 207 292 139 23 chr3 24569945 24570161 -202954417 + L2 LINE L2 2013 2253 -1061 344 348 65 16 chr3 24570183 24570367 -202954211 + L2 LINE L2 2555 2747 -567 190 259 86 17 chr3 24570521 24570579 -202953999 + L2 LINE L2 2916 2977 -337 190 250 16 47 chr3 24571786 24571850 -202952728 + L2 LINE L2 3200 3261 -11 215 268 89 27 chr3 24572693 24572805 -202951773 + MIR3 SINE MIR 54 172 -36 886 245 29 29 chr3 24572885 24573130 -202951448 + MIR SINE MIR 13 257 -5 292 151 0 19 chr3 24573205 24573258 -202951320 + L2 LINE L2 2420 2471 -843 1782 140 59 9 chr3 24573258 24573579 -202950999 + MLT1B LTR MaLR 1 337 -53 2359 87 0 0 chr3 24573623 24573923 -202950655 - AluSx SINE Alu -12 300 1 897 268 96 25 chr3 24573952 24574086 -202950492 + L2 LINE L2 2935 3058 -255 390 100 0 0 chr3 24574086 24574146 -202950432 + (CA)n Simple_repeat Simple_repeat 1 60 0 897 268 96 25 chr3 24574146 24574365 -202950213 + L2 LINE L2 3058 3313 0 24 32 0 0 chr3 24575261 24575292 -202949286 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 24575688 24575713 -202948865 + AT_rich Low_complexity Low_complexity 1 25 0 1952 137 27 7 chr3 24575813 24576112 -202948466 - AluJo SINE Alu -7 305 1 2662 148 8 20 chr3 24576918 24577412 -202947166 + L1MB8 LINE L1 5685 6172 -6 586 279 100 16 chr3 24577906 24578508 -202946070 - L1MC/D LINE L1 -447 5795 5124 338 204 258 0 chr3 24578531 24578624 -202945954 + MER45A DNA AcHobo 62 178 0 1020 284 147 29 chr3 24578635 24579858 -202944720 - L1MC/D LINE L1 -1127 5019 3653 344 175 25 50 chr3 24579872 24579952 -202944626 + MER20 DNA MER1_type 142 219 0 226 308 64 29 chr3 24580312 24580656 -202943922 - L1MC/D LINE L1 -2932 3214 2859 2089 41 0 65 chr3 24580951 24581241 -202943337 + L1PA8 LINE L1 5902 6172 0 285 187 224 50 chr3 24581316 24581557 -202943021 + L1ME4a LINE L1 5690 5972 -149 364 308 118 34 chr3 24581712 24582069 -202942509 + L1MC4a LINE L1 5543 5929 -1879 21 0 0 0 chr3 24582233 24582254 -202942324 + AT_rich Low_complexity Low_complexity 1 21 0 27678 35 1 0 chr3 24582891 24587044 -202937534 - L1PA4 LINE L1 -3 6152 1997 460 303 115 49 chr3 24588093 24588545 -202936033 + L2 LINE L2 1754 2235 -1079 2379 73 0 0 chr3 24588687 24588976 -202935602 + AluY SINE Alu 3 291 -20 332 225 42 0 chr3 24590163 24590234 -202934344 - L2 LINE L2 0 3313 3240 215 81 54 0 chr3 24591722 24591759 -202932819 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr3 24591991 24592040 -202932538 + AT_rich Low_complexity Low_complexity 1 49 0 183 129 0 0 chr3 24592135 24592166 -202932412 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 443 250 40 80 chr3 24592568 24592744 -202931834 - MIR SINE MIR -81 181 13 201 257 168 44 chr3 24592726 24592839 -202931739 + L2 LINE L2 3146 3272 0 * 185 0 40 0 chr3 24592878 24592903 -202931675 + (TTA)n Simple_repeat Simple_repeat 3 28 0 16418 38 4 1 chr3 24592903 24595659 -202928919 - L1PA5 LINE L1 -18 6136 3373 13543 166 37 96 chr3 24595696 24598902 -202925676 - L1PA15 LINE L1 -71 6745 3352 189 0 0 0 chr3 24598902 24598923 -202925655 + (TA)n Simple_repeat Simple_repeat 1 21 0 8820 33 13 0 chr3 24598927 24600761 -202923817 - L1PA3 LINE L1 -3 6152 4305 13543 166 37 96 chr3 24600761 24602342 -202922236 - L1PA15 LINE L1 -3467 3349 2238 439 298 161 59 chr3 24602587 24603496 -202921082 - L2 LINE L2 0 3272 2250 192 250 167 0 chr3 24604654 24604714 -202919864 + L2 LINE L2 3244 3313 0 25 31 0 0 chr3 24605805 24605837 -202918741 + AT_rich Low_complexity Low_complexity 1 32 0 2452 71 0 0 chr3 24606031 24606327 -202918251 - AluY SINE Alu -15 296 1 2364 81 0 7 chr3 24606442 24606738 -202917840 - AluY SINE Alu -17 294 1 428 243 28 93 chr3 24607015 24607229 -202917349 - L1MC4 LINE L1 -4 8038 7839 339 343 22 0 chr3 24607264 24607398 -202917180 - MIR SINE MIR 0 262 126 1417 224 119 17 chr3 24609252 24609613 -202914965 + LTR16A LTR ERVL 41 438 -12 957 262 56 4 chr3 24610475 24610708 -202913870 + MIR SINE MIR 1 245 -17 324 0 0 0 chr3 24612037 24612073 -202912505 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 886 196 44 20 chr3 24612463 24612667 -202911911 - MER3 DNA MER1_type 0 209 1 272 235 59 0 chr3 24612735 24612820 -202911758 - L1MB7 LINE L1 0 6184 6095 705 181 9 109 chr3 24612821 24613031 -202911547 - MER105 DNA DNA -13 191 3 1741 162 7 36 chr3 24613639 24613948 -202910630 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr3 24614066 24614089 -202910489 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 24614231 24614253 -202910325 + AT_rich Low_complexity Low_complexity 1 22 0 426 284 113 24 chr3 24614732 24615024 -202909554 - L1M4 LINE L1 -2876 3270 2953 813 181 88 6 chr3 24615441 24615601 -202908977 + MER45A DNA AcHobo 2 174 -4 1564 177 0 15 chr3 24615831 24616102 -202908476 + Tigger7 DNA MER2_type 1 267 -466 511 175 19 19 chr3 24616097 24616200 -202908378 + Tigger7 DNA MER2_type 2485 2587 0 * 617 253 5 75 chr3 24616421 24616611 -202907967 + MIR SINE MIR 66 243 -19 293 222 9 13 chr3 24616915 24617023 -202907555 + MIR SINE MIR 2 149 -113 292 333 93 43 chr3 24619309 24619567 -202905011 - L3b LINE CR1 -16 1567 1297 269 339 133 48 chr3 24620795 24621344 -202903234 - L2 LINE L2 -98 3174 2591 278 333 70 74 chr3 24621597 24622014 -202902564 - L2 LINE L2 -1298 2016 1602 292 222 0 14 chr3 24623623 24623695 -202900883 + Charlie8 DNA MER1_type 132 202 -2215 232 260 39 0 chr3 24623799 24623876 -202900702 + Charlie8 DNA MER1_type 330 409 -2008 263 172 16 47 chr3 24623951 24624015 -202900563 + Charlie8 DNA MER1_type 1356 1417 -1000 25 0 0 0 chr3 24627754 24627779 -202896799 + GC_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 24627991 24628021 -202896557 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 24628211 24628232 -202896346 + AT_rich Low_complexity Low_complexity 1 21 0 207 242 20 46 chr3 24628243 24628396 -202896182 + (CGGGG)n Simple_repeat Simple_repeat 5 153 0 328 210 49 12 chr3 24630593 24630674 -202893904 + L2 LINE L2 3188 3271 -1 614 238 44 11 chr3 24632183 24632364 -202892214 - L1ME1 LINE L1 -10 6156 5970 556 297 63 9 chr3 24634460 24634682 -202889896 + MIR SINE MIR 8 241 -21 603 238 0 0 chr3 24634947 24635073 -202889505 - MER94 DNA DNA -8 126 1 28 0 0 0 chr3 24635892 24635920 -202888658 + AT_rich Low_complexity Low_complexity 1 28 0 393 272 111 22 chr3 24636056 24636236 -202888342 - MIR SINE MIR -54 208 13 989 222 25 66 chr3 24637833 24638255 -202886323 - L1ME1 LINE L1 -530 5640 5237 296 287 0 0 chr3 24638421 24638529 -202886049 + (TA)n Simple_repeat Simple_repeat 2 109 0 861 279 75 7 chr3 24638529 24638981 -202885597 - L1ME1 LINE L1 -902 5244 4762 1238 246 77 35 chr3 24638986 24639493 -202885085 + L1ME3A LINE L1 5638 6165 -5 419 246 187 22 chr3 24640225 24640359 -202884219 + MER5B DNA MER1_type 23 178 0 268 287 116 31 chr3 24644081 24644221 -202880357 - MIR SINE MIR -61 147 35 302 274 65 70 chr3 24645034 24645264 -202879314 + L2 LINE L2 1612 1840 -1474 185 338 83 22 chr3 24645315 24645543 -202879035 + L2 LINE L2 2150 2391 -923 2241 126 0 0 chr3 24645927 24646228 -202878350 + AluSx SINE Alu 1 301 -11 267 103 0 0 chr3 24646232 24646271 -202878307 + (TG)n Simple_repeat Simple_repeat 1 39 0 2849 85 3 5 chr3 24648036 24648412 -202876166 + THE1C LTR MaLR 1 375 0 1242 140 93 23 chr3 24649401 24649658 -202874920 + ORSL DNA AcHobo 1 275 0 351 246 15 0 chr3 24651015 24651119 -202873459 + MIR SINE MIR 106 210 -52 686 225 30 6 chr3 24651511 24651680 -202872898 - L1MC5 LINE L1 -58 7903 7731 355 224 59 24 chr3 24651698 24651868 -202872710 - L1MC5 LINE L1 -285 7676 7501 581 253 104 11 chr3 24652676 24652858 -202871720 + MIR SINE MIR 47 245 -17 2956 270 84 5 chr3 24653333 24654317 -202870261 + L2 LINE L2 1481 2542 -772 2311 96 3 0 chr3 24654363 24654665 -202869913 + AluSx SINE Alu 1 303 -9 22 80 0 0 chr3 24654731 24654781 -202869797 + AT_rich Low_complexity Low_complexity 1 50 0 1802 146 65 3 chr3 24655165 24655501 -202869077 + MER46B DNA MER2_type 1 232 -4 21 36 0 0 chr3 24655562 24655590 -202868988 + AT_rich Low_complexity Low_complexity 1 28 0 202 345 92 25 chr3 24655967 24656086 -202868492 - MIR3 SINE MIR -78 130 4 25 75 0 0 chr3 24656943 24656996 -202867582 + AT_rich Low_complexity Low_complexity 1 53 0 214 195 0 0 chr3 24657066 24657107 -202867471 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 71 0 0 chr3 24658085 24658127 -202866451 + AT_rich Low_complexity Low_complexity 1 42 0 1602 188 24 7 chr3 24658130 24658423 -202866155 - AluJo SINE Alu -14 298 1 21 0 0 0 chr3 24658979 24659000 -202865578 + AT_rich Low_complexity Low_complexity 1 21 0 1429 258 113 26 chr3 24660740 24661288 -202863290 - MLT1G LTR MaLR -18 572 17 26 0 0 0 chr3 24662326 24662352 -202862226 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr3 24662472 24662503 -202862075 + AT_rich Low_complexity Low_complexity 1 31 0 415 237 62 62 chr3 24662623 24662995 -202861583 - L1M4 LINE L1 -2739 3905 3534 22 88 0 0 chr3 24663647 24663704 -202860874 + AT_rich Low_complexity Low_complexity 1 57 0 25 51 0 0 chr3 24663756 24663795 -202860783 + AT_rich Low_complexity Low_complexity 1 39 0 200 185 0 37 chr3 24666051 24666105 -202858473 + A-rich Low_complexity Low_complexity 6 57 0 3992 202 35 18 chr3 24666997 24667959 -202856619 - L1M4 LINE L1 -4927 1615 637 2455 70 0 0 chr3 24668266 24668565 -202856013 - AluY SINE Alu -12 299 1 2836 168 62 9 chr3 24668735 24669311 -202855267 - L1MB7 LINE L1 -16 6168 5562 555 226 120 51 chr3 24669609 24669826 -202854752 + MIR SINE MIR 31 262 0 2258 96 7 0 chr3 24669980 24670271 -202854307 - AluY SINE Alu -18 293 1 555 127 136 0 chr3 24670929 24671039 -202853539 - MER20 DNA MER1_type 0 219 95 228 244 228 8 chr3 24671175 24671302 -202853276 + MER103 DNA DNA 3 157 -9 314 206 32 0 chr3 24671358 24671421 -202853157 - MIR3 SINE MIR -54 154 90 247 290 0 43 chr3 24671452 24671521 -202853057 - L2 LINE L2 -25 3247 3182 438 344 78 22 chr3 24671933 24672163 -202852415 + MIR SINE MIR 16 258 -4 366 278 126 40 chr3 24672179 24672543 -202852035 - L2 LINE L2 -1360 1954 1566 271 361 113 4 chr3 24674008 24674238 -202850340 + L2 LINE L2 2226 2480 -834 210 287 69 139 chr3 24674379 24674595 -202849983 + L2 LINE L2 2979 3179 -93 197 235 39 20 chr3 24674602 24674653 -202849925 + MIR SINE MIR 207 258 -4 377 357 70 11 chr3 24674954 24675139 -202849439 + MIR SINE MIR 24 219 -43 1374 184 83 12 chr3 24675171 24675498 -202849080 + MLT1A1 LTR MaLR 4 353 -12 201 207 0 35 chr3 24676228 24676286 -202848292 + T-rich Low_complexity Low_complexity 5 60 0 7831 188 41 2 chr3 24676653 24678371 -202846207 - L1P LINE L1 -1534 4612 2827 189 0 0 0 chr3 24678381 24678402 -202846176 + (TA)n Simple_repeat Simple_repeat 2 22 0 14995 35 4 1 chr3 24678406 24680992 -202843586 - L1PA3 LINE L1 -3 6152 3560 31 0 0 0 chr3 24781916 24781947 -202742631 + AT_rich Low_complexity Low_complexity 1 31 0 245 243 10 107 chr3 24782097 24782200 -202742378 + MIR3 SINE MIR 112 204 -4 779 211 40 60 chr3 24782237 24782436 -202742142 + MER58C DNA MER1_type 2 196 -19 308 311 44 7 chr3 24782668 24782803 -202741775 - MER91C DNA MER1_type 0 140 1 713 270 132 48 chr3 24785113 24785468 -202739110 + L2 LINE L2 2929 3313 0 2268 146 9 6 chr3 24785942 24786278 -202738300 - MER1B DNA MER1_type 0 337 1 1953 205 54 14 chr3 24787508 24787952 -202736626 - MLT1C LTR MaLR 0 467 6 255 319 177 0 chr3 24789016 24789129 -202735449 + MIR SINE MIR 92 224 -38 284 364 20 10 chr3 24789195 24789346 -202735232 - MIR SINE MIR -65 143 25 296 263 131 0 chr3 24789579 24789678 -202734900 + MIR SINE MIR 86 197 -65 2265 100 0 0 chr3 24790671 24790974 -202733604 - AluSg SINE Alu 0 303 1 342 308 29 52 chr3 24792138 24792373 -202732205 + MIR SINE MIR 3 236 -26 2455 72 0 10 chr3 24792595 24792902 -202731676 + L1PA7 LINE L1 5851 6154 0 21 0 0 0 chr3 24793188 24793209 -202731369 + AT_rich Low_complexity Low_complexity 1 21 0 273 298 21 21 chr3 24793719 24793813 -202730765 + MER5A DNA MER1_type 26 119 -70 2899 89 38 23 chr3 24793835 24794153 -202730425 - L1MA3 LINE L1 0 6305 5993 2655 43 0 0 chr3 24794153 24794453 -202730125 - AluY SINE Alu -11 300 1 2899 89 38 23 chr3 24794453 24794732 -202729846 - L1MA3 LINE L1 -312 5993 5525 1379 188 56 24 chr3 24794732 24795020 -202729558 - AluJo SINE Alu -3 309 13 876 175 0 0 chr3 24795037 24795191 -202729387 - FAM SINE Alu -22 163 10 196 179 0 26 chr3 24795198 24795237 -202729341 - MER5A DNA MER1_type -108 81 44 393 310 91 21 chr3 24795617 24795804 -202728774 + MIR3 SINE MIR 6 205 -3 2980 104 30 14 chr3 24796585 24797017 -202727561 + L1PB4 LINE L1 5718 6156 0 246 289 36 24 chr3 24797337 24797420 -202727158 + MIR SINE MIR 34 117 -91 186 43 0 0 chr3 24797996 24798019 -202726559 + (TTATA)n Simple_repeat Simple_repeat 4 26 0 26 0 0 0 chr3 24798769 24798795 -202725783 + AT_rich Low_complexity Low_complexity 1 26 0 2950 166 43 61 chr3 24798911 24799533 -202725045 + LTR36 LTR ERV1 1 611 0 1585 183 9 56 chr3 24800609 24800931 -202723647 - AluJo SINE Alu -5 307 1 694 277 15 30 chr3 24800934 24801136 -202723442 + MIR SINE MIR 37 235 -27 186 71 0 0 chr3 24801784 24801812 -202722766 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr3 24802042 24802067 -202722511 + (T)n Simple_repeat Simple_repeat 1 25 0 2394 103 0 3 chr3 24802517 24802829 -202721749 + AluSx SINE Alu 2 312 0 750 242 167 43 chr3 24803225 24803709 -202720869 + MLT1H1 LTR MaLR 17 555 0 227 203 51 17 chr3 24804194 24804253 -202720325 - MER91B DNA MER1_type -42 148 88 403 287 230 14 chr3 24805062 24805271 -202719307 + MIR SINE MIR 9 262 0 22 0 0 0 chr3 24805276 24805298 -202719280 + AT_rich Low_complexity Low_complexity 1 22 0 266 239 141 0 chr3 24805614 24805706 -202718872 - MIR SINE MIR -16 246 142 600 238 24 53 chr3 24807288 24807494 -202717084 + MIR SINE MIR 63 262 0 505 254 129 49 chr3 24807628 24807700 -202716878 + L1ME4a LINE L1 5740 5805 -316 2121 118 0 23 chr3 24807700 24808004 -202716574 - AluSx SINE Alu -11 301 5 505 254 129 49 chr3 24808004 24808281 -202716297 + L1ME4a LINE L1 5805 6117 -4 313 244 0 13 chr3 24808766 24808844 -202715734 - MIR3 SINE MIR -9 199 123 520 231 27 34 chr3 24809812 24809959 -202714619 + MIR SINE MIR 109 254 -8 671 165 132 6 chr3 24810077 24810233 -202714345 - MER5A DNA MER1_type -6 183 4 232 221 235 0 chr3 24812138 24812206 -202712372 - L2 LINE L2 0 3272 3189 208 222 44 89 chr3 24812270 24812360 -202712218 - MER5A DNA MER1_type -56 133 48 1719 197 23 0 chr3 24813450 24813750 -202710828 - AluJo SINE Alu 0 312 6 1928 151 0 0 chr3 24813842 24814133 -202710445 + AluJb SINE Alu 5 295 -17 335 255 135 73 chr3 24814417 24814481 -202710097 + MLT1L LTR MaLR 215 274 -341 936 156 27 11 chr3 24814481 24814667 -202709911 + MER53 DNA DNA 1 189 0 335 255 135 73 chr3 24814667 24814861 -202709717 + MLT1L LTR MaLR 274 489 -126 423 313 81 19 chr3 24814861 24815021 -202709557 - MER5B DNA MER1_type -2 176 7 341 183 76 20 chr3 24816275 24816364 -202708214 + L1MC4a LINE L1 6285 6371 -1437 2286 147 3 29 chr3 24816364 24816710 -202707868 + MER1B DNA MER1_type 1 337 0 311 330 0 22 chr3 24817333 24817424 -202707154 - MER91A DNA MER1_type -40 156 68 279 108 0 0 chr3 24817589 24817626 -202706952 + MSTA LTR MaLR 1 37 -391 1687 176 141 3 chr3 24817626 24817995 -202706583 + MSTA LTR MaLR 9 428 0 9875 169 29 3 chr3 24817995 24819603 -202704975 + MSTA-int LTR MaLR 1 1649 -2 2232 119 182 0 chr3 24819605 24819967 -202704611 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr3 24820808 24820833 -202703745 + AT_rich Low_complexity Low_complexity 1 25 0 359 244 12 0 chr3 24821739 24821821 -202702757 + MLT1L LTR MaLR 170 252 -363 498 199 173 58 chr3 24821862 24822053 -202702525 + MLT1L LTR MaLR 341 553 -62 1379 142 0 27 chr3 24823014 24823239 -202701339 - AluJo SINE Alu -8 304 86 3689 274 111 24 chr3 24825113 24825217 -202699361 - HAL1 LINE L1 -60 2447 2353 191 59 0 29 chr3 24825217 24825251 -202699327 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 1544 173 21 32 chr3 24825251 24825535 -202699043 - AluJb SINE Alu -31 281 1 3689 274 111 24 chr3 24825535 24826275 -202698303 - HAL1 LINE L1 -154 2353 1679 2309 94 0 0 chr3 24826275 24826572 -202698006 - AluSx SINE Alu -15 297 1 3689 274 111 24 chr3 24826572 24827940 -202696638 - HAL1 LINE L1 -828 1679 2 6627 128 68 10 chr3 24828284 24829448 -202695130 + Tigger3b DNA MER2_type 1 1231 0 1590 153 0 0 chr3 24829568 24829804 -202694774 + AluSx SINE Alu 1 236 -76 213 39 0 0 chr3 24829819 24829845 -202694733 + (A)n Simple_repeat Simple_repeat 1 26 0 21 82 0 0 chr3 24830120 24830169 -202694409 + AT_rich Low_complexity Low_complexity 1 49 0 2663 243 77 35 chr3 24830906 24831881 -202692697 - L2 LINE L2 -256 3057 2038 625 326 158 18 chr3 24832209 24832602 -202691976 + LTR16A LTR ERVL 1 448 -2 4333 195 46 6 chr3 24832944 24834519 -202690059 - L1MB7 LINE L1 -5 6677 5040 3371 256 24 28 chr3 24834542 24835691 -202688887 - L1MB7 LINE L1 -4543 2103 960 1096 238 125 7 chr3 24835711 24836014 -202688564 - L1MB7 LINE L1 -6187 355 17 375 311 46 38 chr3 24836133 24836553 -202688025 - L1MC/D LINE L1 -374 5747 5334 1563 231 127 65 chr3 24837201 24837372 -202687206 + MLT1E2 LTR MaLR 4 163 -463 1608 46 0 0 chr3 24837372 24837569 -202687009 - L1PA4 LINE L1 -3 6152 5956 1563 231 127 65 chr3 24837569 24837978 -202686600 + MLT1E2 LTR MaLR 163 620 -6 556 286 132 42 chr3 24837980 24838445 -202686133 - L1MC/D LINE L1 -2757 3389 2875 538 287 97 34 chr3 24838544 24838896 -202685682 - HAL1 LINE L1 -855 1652 1279 291 271 186 43 chr3 24839496 24839636 -202684942 - MIR SINE MIR -55 207 48 1687 112 9 124 chr3 24839663 24840029 -202684549 + AluSx SINE Alu 1 302 0 25 0 0 0 chr3 24840038 24840063 -202684515 + AT_rich Low_complexity Low_complexity 1 25 0 224 186 115 97 chr3 24840245 24840358 -202684220 + L2 LINE L2 3148 3262 -10 946 184 203 0 chr3 24840395 24840661 -202683917 - MER33 DNA MER1_type 0 324 5 2414 90 0 3 chr3 24841236 24841547 -202683031 + AluSx SINE Alu 1 310 -2 716 182 122 0 chr3 24841599 24841747 -202682831 + AluJo SINE Alu 1 166 -146 1019 186 6 11 chr3 24841748 24841925 -202682653 + AluJb SINE Alu 109 284 -28 1219 117 34 0 chr3 24841950 24842129 -202682449 - MER2 DNA MER2_type -160 185 1 679 264 39 35 chr3 24842487 24842741 -202681837 + LTR16A LTR ERVL 12 266 -184 2434 108 19 0 chr3 24843573 24843933 -202680645 + L1PA13 LINE L1 5786 6152 -11 191 304 65 58 chr3 24844020 24844158 -202680420 - L2 LINE L2 -454 2860 2722 251 326 39 23 chr3 24844290 24844419 -202680159 + MIR3 SINE MIR 33 163 -45 407 296 99 56 chr3 24844665 24844807 -202679771 + MER91A DNA MER1_type 29 176 -20 536 177 192 0 chr3 24845724 24845854 -202678724 - MIR SINE MIR -85 177 23 209 284 0 15 chr3 24846705 24846772 -202677806 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1935 154 39 3 chr3 24846855 24847186 -202677392 + MER2 DNA MER2_type 2 344 0 285 206 48 16 chr3 24848094 24848157 -202676421 + L2 LINE L2 3249 3313 0 220 302 0 0 chr3 24848641 24848694 -202675884 - MIR3 SINE MIR -11 197 145 202 305 67 19 chr3 24851620 24851725 -202672853 - MIR3 SINE MIR -9 199 90 2259 87 14 0 chr3 24852468 24852755 -202671823 - AluSc SINE Alu -15 294 4 21 36 0 0 chr3 24852791 24852819 -202671759 + AT_rich Low_complexity Low_complexity 1 28 0 265 313 12 0 chr3 24853515 24853595 -202670983 + MIR3 SINE MIR 122 202 -6 330 244 169 41 chr3 24854613 24854785 -202669793 - L2 LINE L2 0 3313 3120 693 183 57 118 chr3 24854953 24855199 -202669379 + L2 LINE L2 3076 3306 -7 781 289 118 20 chr3 24855244 24855684 -202668894 + L2 LINE L2 1536 2018 -1296 207 250 0 78 chr3 24855683 24855747 -202668831 + L2 LINE L2 3208 3266 -6 * 194 135 0 115 chr3 24856496 24856548 -202668030 + L2 LINE L2 3227 3272 0 23 0 0 0 chr3 24858801 24858824 -202665754 + AT_rich Low_complexity Low_complexity 1 23 0 197 270 79 0 chr3 24858857 24858920 -202665658 + L3 LINE CR1 321 388 -1189 418 341 7 0 chr3 24859124 24859262 -202665316 + MIR3 SINE MIR 67 205 -3 804 164 6 18 chr3 24859330 24859495 -202665083 + L1MA5 LINE L1 6133 6295 -5 317 291 152 93 chr3 24859538 24859967 -202664611 + L3 LINE CR1 750 1203 -374 218 319 101 65 chr3 24860096 24860265 -202664313 + L3 LINE CR1 1397 1571 -6 259 273 18 36 chr3 24860434 24860544 -202664034 + CT-rich Low_complexity Low_complexity 1 108 0 1643 190 0 24 chr3 24860880 24861175 -202663403 + AluJb SINE Alu 1 288 -24 1880 247 78 2 chr3 24862223 24862790 -202661788 + L1M4 LINE L1 4457 5066 -1080 2198 157 40 71 chr3 24862792 24863242 -202661336 + MER77 LTR ERV1 1 436 -169 10619 119 83 142 chr3 24863242 24863969 -202660609 - Tigger1 DNA MER2_type 0 2418 1649 2339 96 0 0 chr3 24863969 24864272 -202660306 - AluSx SINE Alu -9 303 1 10619 119 83 142 chr3 24864272 24866065 -202658513 - Tigger1 DNA MER2_type -769 1649 48 1365 273 61 64 chr3 24866121 24866858 -202657720 + L2 LINE L2 2452 3209 -104 366 278 130 0 chr3 24868751 24868866 -202655712 + L2 LINE L2 3184 3313 0 322 208 0 28 chr3 24868967 24869039 -202655539 + L2 LINE L2 3244 3313 0 1349 208 30 33 chr3 24869461 24869793 -202654785 - L1ME2 LINE L1 -6 6158 5828 1095 184 72 34 chr3 24869796 24870003 -202654575 - MER8 DNA MER2_type -3 236 22 2264 200 87 22 chr3 24870015 24870722 -202653856 - L1ME2 LINE L1 -335 5829 5075 242 226 426 9 chr3 24870751 24870866 -202653712 - MER77 LTR ERV1 -6 599 437 441 273 210 43 chr3 24870880 24871180 -202653398 - L2 LINE L2 -911 2403 2054 2022 106 0 7 chr3 24871188 24871480 -202653098 - AluSc SINE Alu -19 290 1 2389 73 7 0 chr3 24871737 24872040 -202652538 + AluY SINE Alu 1 305 -6 194 107 71 0 chr3 24872365 24872421 -202652157 + (TA)n Simple_repeat Simple_repeat 1 60 0 759 253 185 49 chr3 24872602 24873210 -202651368 - L2 LINE L2 -4 3309 2616 257 222 130 37 chr3 24873290 24873398 -202651180 + L2 LINE L2 3190 3307 -6 26 0 0 0 chr3 24874133 24874159 -202650419 + AT_rich Low_complexity Low_complexity 1 26 0 1602 142 31 43 chr3 24876687 24877011 -202647567 - MER33 DNA MER1_type 0 324 5 240 254 57 49 chr3 24877284 24877406 -202647172 + L1ME4a LINE L1 5923 6045 -76 589 186 0 0 chr3 24877472 24877574 -202647004 - AluJb SINE Alu -30 282 181 1308 183 4 4 chr3 24877574 24877803 -202646775 - AluJb SINE Alu -83 229 1 25 51 0 0 chr3 24877826 24877865 -202646713 + AT_rich Low_complexity Low_complexity 1 39 0 2109 163 18 3 chr3 24878052 24878395 -202646183 - MER7A DNA MER2_type 0 346 1 2519 70 0 0 chr3 24878457 24878757 -202645821 - AluY SINE Alu -11 300 1 1439 156 105 8 chr3 24878921 24879178 -202645400 + AluJo SINE Alu 1 282 -30 1040 172 0 17 chr3 24879192 24879372 -202645206 + AluSg/x SINE Alu 134 310 0 188 368 172 14 chr3 24880592 24880801 -202643777 + MIR SINE MIR 9 250 -12 1805 220 47 4 chr3 24884315 24884779 -202639799 - Charlie4a DNA MER1_type -5 503 20 5150 139 41 5 chr3 24885454 24885610 -202638968 - L1PA16 LINE L1 0 6166 6017 222 37 0 0 chr3 24885610 24885637 -202638941 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 5150 139 41 5 chr3 24885637 24886358 -202638220 - L1PA16 LINE L1 -149 6017 5257 6282 196 23 5 chr3 24886512 24887871 -202636707 - L1 LINE L1 -904 5242 3860 571 174 41 0 chr3 24887871 24887992 -202636586 + L1PA15-16 LINE L1 2350 2475 -4374 353 263 167 45 chr3 24888497 24888695 -202635883 - MIR SINE MIR -13 249 28 194 352 96 32 chr3 24889132 24889507 -202635071 + L2 LINE L2 1944 2342 -972 2080 90 0 8 chr3 24889563 24889830 -202634748 + AluSq SINE Alu 39 303 -10 243 255 0 0 chr3 24890014 24890065 -202634513 + GA-rich Low_complexity Low_complexity 2 52 0 1527 193 18 11 chr3 24891259 24891539 -202633039 + AluJo SINE Alu 1 282 -30 183 42 0 0 chr3 24891543 24891567 -202633011 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 1751 173 66 18 chr3 24892039 24892374 -202632204 - MLT1A1 LTR MaLR 0 365 15 935 277 90 19 chr3 24892702 24893114 -202631464 + MLT1J1 LTR MaLR 4 444 -2 316 290 103 26 chr3 24893779 24893934 -202630644 + MIR3 SINE MIR 21 187 -21 422 219 181 48 chr3 24894317 24894609 -202629969 - Charlie7 DNA MER1_type 0 2612 2282 1836 230 130 15 chr3 24894636 24895284 -202629294 - Charlie7 DNA MER1_type -401 2211 1490 772 261 80 31 chr3 24895294 24895619 -202628959 - Charlie7 DNA MER1_type -2259 353 13 411 255 174 19 chr3 24895701 24895862 -202628716 + MER5A DNA MER1_type 4 189 0 241 279 269 18 chr3 24896062 24896281 -202628297 - L2 LINE L2 -61 3252 2979 1790 192 137 105 chr3 24896287 24897051 -202627527 + LTR1B LTR ERV1 1 982 -38 234 236 0 36 chr3 24897202 24897257 -202627321 + L2 LINE L2 3219 3271 -1 259 250 226 0 chr3 24899198 24899282 -202625296 - MIR3 SINE MIR -14 194 92 702 296 94 57 chr3 24899806 24900087 -202624491 + L2 LINE L2 2827 3096 -217 441 0 0 0 chr3 24900087 24900136 -202624442 + (CA)n Simple_repeat Simple_repeat 2 50 0 702 296 94 57 chr3 24900136 24900148 -202624430 + L2 LINE L2 3096 3106 -207 2053 121 4 0 chr3 24900148 24900428 -202624150 - AluSx SINE Alu -31 281 1 702 296 94 57 chr3 24900428 24900603 -202623975 + L2 LINE L2 3106 3313 0 2736 7 0 0 chr3 24901257 24901553 -202623025 - AluY SINE Alu -15 296 1 416 299 55 30 chr3 24902780 24902944 -202621634 + MIR3 SINE MIR 26 193 -15 254 192 77 67 chr3 24903514 24903618 -202620960 + MIR SINE MIR 73 177 -85 3779 197 83 70 chr3 24904310 24905392 -202619186 + LTR28 LTR ERV1 1 1735 -20 1706 84 0 0 chr3 24905428 24905641 -202618937 + AluSc SINE Alu 81 293 -16 344 368 48 6 chr3 24905679 24905845 -202618733 - MIR3 SINE MIR -34 174 2 315 309 81 16 chr3 24909640 24909763 -202614815 - L2 LINE L2 -1 3271 3141 679 297 41 5 chr3 24909814 24910033 -202614545 - MIR SINE MIR -15 247 21 297 0 0 0 chr3 24910193 24910226 -202614352 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1314 164 5 18 chr3 24910233 24910453 -202614125 - AluJo SINE Alu -24 288 72 248 247 0 155 chr3 24910651 24910748 -202613830 - L2 LINE L2 -2 3270 3189 325 340 38 19 chr3 24911200 24911359 -202613219 + MIR SINE MIR 20 181 -81 260 359 81 21 chr3 24911804 24912038 -202612540 - MIR SINE MIR -12 250 3 183 147 29 0 chr3 24912369 24912403 -202612175 - L2 LINE L2 -12 3301 3267 2143 109 14 0 chr3 24913294 24913587 -202610991 + AluY SINE Alu 1 297 -14 1566 164 3 40 chr3 24913587 24913891 -202610687 - AluJb SINE Alu -19 293 1 208 399 128 0 chr3 24914272 24914420 -202610158 - L2 LINE L2 0 3272 3106 1381 186 71 4 chr3 24914613 24914893 -202609685 + L1MC1 LINE L1 5732 6030 -303 2882 176 9 33 chr3 24914893 24915432 -202609146 - MER44D DNA MER2_type -24 581 1 1209 163 76 47 chr3 24915434 24915575 -202609003 + L1MC1 LINE L1 6048 6183 -161 2584 55 0 3 chr3 24915575 24915882 -202608696 + AluY SINE Alu 1 306 -5 1209 163 76 47 chr3 24915882 24916029 -202608549 + L1MC1 LINE L1 6183 6344 0 2263 99 7 0 chr3 24916786 24917090 -202607488 + AluSq SINE Alu 1 306 -7 779 196 33 13 chr3 24917981 24918134 -202606444 - MLT1C LTR MaLR -25 442 287 * 1401 152 81 108 chr3 24918130 24918499 -202606079 - MLT1C LTR MaLR -106 361 3 190 298 0 0 chr3 24918499 24918546 -202606032 + MIR3 SINE MIR 115 161 -47 213 170 64 0 chr3 24918818 24918865 -202605713 + L2 LINE L2 3262 3311 -2 228 370 48 27 chr3 24919410 24919556 -202605022 + L2 LINE L2 596 744 -2570 207 0 0 0 chr3 24919830 24919853 -202604725 + (T)n Simple_repeat Simple_repeat 1 23 0 324 284 9 37 chr3 24920209 24920318 -202604260 - L2 LINE L2 -5 3308 3203 1768 174 7 7 chr3 24920406 24920699 -202603879 - AluJb SINE Alu -19 293 1 266 288 23 45 chr3 24921037 24921169 -202603409 + L2 LINE L2 1823 1951 -1363 462 268 24 16 chr3 24921348 24921475 -202603103 + MER94 DNA DNA 7 134 0 200 304 146 79 chr3 24922103 24922343 -202602235 + L2 LINE L2 2933 3188 -84 27 0 0 0 chr3 24922759 24922786 -202601792 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr3 24924220 24924265 -202600313 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 24924586 24924614 -202599964 + AT_rich Low_complexity Low_complexity 1 28 0 28 99 0 0 chr3 24925448 24925539 -202599039 + AT_rich Low_complexity Low_complexity 1 91 0 370 250 189 0 chr3 24930542 24930694 -202593884 + MER5A DNA MER1_type 4 189 0 533 158 4 214 chr3 24930838 24931072 -202593506 - MER5A DNA MER1_type -1 188 4 25 0 0 0 chr3 24931243 24931268 -202593310 + AT_rich Low_complexity Low_complexity 1 25 0 1541 208 29 44 chr3 24931676 24932061 -202592517 - MER89 LTR ERV1 -1 558 180 357 175 0 0 chr3 24932069 24932132 -202592446 - MER89 LTR ERV1 -496 63 1 270 254 0 0 chr3 24932869 24932924 -202591654 - L2 LINE L2 -5 3267 3213 5149 35 0 0 chr3 24933753 24934362 -202590216 + L1PA3 LINE L1 5544 6152 -3 2105 76 0 0 chr3 24935601 24935864 -202588714 + AluY SINE Alu 40 302 -9 313 269 106 34 chr3 24935911 24936119 -202588459 - L1MC4a LINE L1 -1949 6253 6031 1098 180 11 16 chr3 24936226 24936415 -202588163 + MER5A DNA MER1_type 1 188 -1 353 332 73 28 chr3 24936619 24936905 -202587673 - L1MC4a LINE L1 -1112 5428 5130 25 31 0 0 chr3 24936997 24937029 -202587549 + AT_rich Low_complexity Low_complexity 1 32 0 1516 160 93 15 chr3 24937049 24937318 -202587260 - AluJo SINE Alu -20 292 3 656 320 102 46 chr3 24937403 24938333 -202586245 - L1MC4a LINE L1 -2961 3579 2598 532 318 72 70 chr3 24938345 24939150 -202585428 + L1ME1 LINE L1 36 842 -5554 493 268 91 10 chr3 24939171 24939369 -202585209 + L1ME1 LINE L1 3631 3844 -2371 * 3054 233 78 40 chr3 24939365 24940334 -202584244 + L1ME1 LINE L1 4231 5162 -1073 2057 135 3 7 chr3 24940334 24940638 -202583940 + AluSx SINE Alu 1 303 -9 3054 233 78 40 chr3 24940638 24941297 -202583281 + L1ME1 LINE L1 5162 5944 -291 2258 104 0 3 chr3 24941297 24941595 -202582983 - AluSg SINE Alu -13 297 1 3054 233 78 40 chr3 24941595 24941828 -202582750 + L1ME1 LINE L1 5944 6167 -68 255 324 9 9 chr3 24942313 24942421 -202582157 - L1MC4a LINE L1 -6412 128 21 1617 200 10 13 chr3 24942437 24942747 -202581831 - AluJb SINE Alu -3 309 1 1297 212 85 184 chr3 24942750 24943881 -202580697 + L2 LINE L2 2310 3310 -3 1738 169 3 26 chr3 24943961 24944263 -202580315 + AluJb SINE Alu 2 296 -16 284 273 160 20 chr3 24944426 24944576 -202580002 - MIR3 SINE MIR -36 172 2 191 290 14 43 chr3 24945612 24945681 -202578897 - MIR SINE MIR -125 83 17 216 356 100 40 chr3 24946092 24946643 -202577935 + L2 LINE L2 945 1528 -1786 318 329 177 44 chr3 24946645 24947237 -202577341 + L2 LINE L2 2212 2882 -432 3162 273 129 27 chr3 24947521 24949049 -202575529 - L2 LINE L2 -5 3308 1640 1029 255 273 19 chr3 24949469 24950195 -202574383 - L2 LINE L2 -1661 1653 744 467 273 31 16 chr3 24950414 24950542 -202574036 - MIR SINE MIR -89 173 44 239 321 107 36 chr3 24951981 24952177 -202572401 - MIR SINE MIR -4 258 49 799 202 35 81 chr3 24953054 24953252 -202571326 - MER5A DNA MER1_type 0 189 1 192 77 0 0 chr3 24955938 24955964 -202568614 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 351 245 172 56 chr3 24957102 24957175 -202567403 - MIR SINE MIR 0 262 199 2454 58 0 0 chr3 24957175 24957469 -202567109 - AluY SINE Alu -17 294 1 351 245 172 56 chr3 24957469 24957628 -202566950 - MIR SINE MIR -63 199 3 251 288 183 26 chr3 24957939 24958092 -202566486 + L2 LINE L2 2560 2736 -578 25 51 0 0 chr3 24958720 24958759 -202565819 + AT_rich Low_complexity Low_complexity 1 39 0 264 303 8 23 chr3 24958772 24958904 -202565674 - L1ME LINE L1 -254 5867 5738 4472 23 6 0 chr3 24958921 24959453 -202565125 - L1P LINE L1 -1975 4171 3637 3147 173 14 2 chr3 24959556 24960376 -202564202 - L1M1 LINE L1 -745 5401 4711 1634 193 10 7 chr3 24960383 24960689 -202563889 - AluJb SINE Alu -5 307 1 333 233 10 0 chr3 24960718 24960815 -202563763 - L1MC4 LINE L1 -1339 7498 2521 327 261 0 23 chr3 24960875 24960963 -202563615 - L1MC4 LINE L1 -1339 6703 6618 21 0 0 0 chr3 24961064 24961085 -202563493 + AT_rich Low_complexity Low_complexity 1 21 0 7685 174 41 32 chr3 24961086 24962449 -202562129 + L1MB8 LINE L1 2921 4306 -1840 2405 75 0 3 chr3 24962449 24962744 -202561834 - AluY SINE Alu -13 298 5 7685 174 41 32 chr3 24962744 24963151 -202561427 + L1MB8 LINE L1 4306 4708 -1438 207 100 0 0 chr3 24963183 24963213 -202561365 + (TA)n Simple_repeat Simple_repeat 1 30 0 778 215 58 35 chr3 24963952 24964247 -202560331 + L1MB8 LINE L1 5759 6022 -156 1416 253 67 26 chr3 24964307 24965184 -202559394 - L1MC4 LINE L1 -4889 1534 1061 338 311 10 0 chr3 24965288 24965391 -202559187 - L1MC4 LINE L1 -5502 921 818 246 343 29 15 chr3 24965633 24965770 -202558808 - L1MC4 LINE L1 -6020 403 265 237 237 26 26 chr3 24965917 24965993 -202558585 - L1MCa LINE L1 -6331 95 20 1804 154 101 0 chr3 24966387 24966693 -202557885 - MER1B DNA MER1_type 0 337 1 645 218 8 8 chr3 24966810 24966943 -202557635 + FLAM_A SINE Alu 1 133 0 28 71 0 0 chr3 24967607 24967663 -202556915 + AT_rich Low_complexity Low_complexity 1 56 0 751 265 25 5 chr3 24968192 24968396 -202556182 + MER3 DNA MER1_type 2 209 0 5709 25 1 1 chr3 24969165 24969834 -202554744 - L1PA3 LINE L1 0 6155 5487 1857 156 28 0 chr3 24970301 24970589 -202553989 + AluSx SINE Alu 2 297 -15 336 96 39 0 chr3 24970776 24970828 -202553750 + MER65B LTR ERV1 1 54 -477 272 222 32 16 chr3 24970832 24970895 -202553683 - MER2 DNA MER2_type 0 345 282 * 495 270 107 19 chr3 24970874 24971033 -202553545 - MER8 DNA MER2_type -64 175 3 234 232 89 95 chr3 24971107 24971275 -202553303 + MER65B LTR ERV1 80 246 -285 1547 164 28 71 chr3 24971640 24971964 -202552614 - AluJb SINE Alu -2 310 1 220 341 57 0 chr3 24972027 24972115 -202552463 + L2 LINE L2 3133 3225 -47 425 299 129 7 chr3 24973629 24973806 -202550772 - MIR SINE MIR -48 214 22 1670 152 9 60 chr3 24974143 24974458 -202550120 - AluSx SINE Alu -10 302 4 5361 38 3 0 chr3 24976455 24977136 -202547442 - L1P LINE L1 -2465 3681 2999 10082 25 1 0 chr3 24977136 24979100 -202545478 + L1PA3 LINE L1 4194 6155 0 300 290 75 18 chr3 24979307 24979547 -202545031 - L1MC/D LINE L1 -755 5391 5213 189 359 43 11 chr3 24980155 24980247 -202544331 + MIR SINE MIR 29 123 -139 23 0 0 0 chr3 24980502 24980525 -202544053 + AT_rich Low_complexity Low_complexity 1 23 0 1512 175 38 15 chr3 24980757 24981020 -202543558 + AluJo SINE Alu 14 282 -30 388 295 160 6 chr3 24981347 24981503 -202543075 - MER5A DNA MER1_type -1 188 9 853 196 38 11 chr3 24982221 24982405 -202542173 - MER5A DNA MER1_type 0 189 1 190 137 0 39 chr3 24983243 24983294 -202541284 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 4224 54 6 0 chr3 24984220 24984755 -202539823 + L1PA7 LINE L1 5615 6152 -2 186 167 0 0 chr3 24984811 24984847 -202539731 + A-rich Low_complexity Low_complexity 2 37 0 23 68 0 0 chr3 24985438 24985482 -202539096 + AT_rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr3 24985701 24985725 -202538853 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 24986883 24986905 -202537673 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 24988663 24988684 -202535894 + AT_rich Low_complexity Low_complexity 1 21 0 462 315 25 47 chr3 24988772 24989051 -202535527 - MARNA DNA Mariner -238 348 76 366 349 60 36 chr3 24989170 24989419 -202535159 - L3 LINE CR1 -13 1564 1310 185 321 19 0 chr3 24989479 24989532 -202535046 + L2 LINE L2 3258 3311 -2 22 0 0 0 chr3 24989572 24989594 -202534984 + AT_rich Low_complexity Low_complexity 1 22 0 260 333 81 0 chr3 24990686 24990785 -202533793 - MIR SINE MIR -5 257 151 2171 109 6 3 chr3 24991195 24991507 -202533071 - AluSp SINE Alu 0 313 1 21 0 0 0 chr3 24991774 24991795 -202532783 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 24991963 24991998 -202532580 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 24994350 24994373 -202530205 + AT_rich Low_complexity Low_complexity 1 23 0 1698 249 75 12 chr3 24994379 24995018 -202529560 + L1M4 LINE L1 2569 3247 -2899 1528 201 81 26 chr3 24995024 24995495 -202529083 + L1M4 LINE L1 4850 5346 -812 1871 146 21 0 chr3 24995505 24995793 -202528785 - AluSx SINE Alu -18 294 1 931 146 176 10 chr3 24995802 24996007 -202528571 - L1MD1 LINE L1 -2 6240 6002 381 209 135 0 chr3 24996008 24996171 -202528407 - L1M4 LINE L1 -2889 3257 3073 242 245 147 35 chr3 24996191 24996334 -202528244 - L1ME LINE L1 -346 5775 5617 25 0 0 0 chr3 24996474 24996499 -202528079 + AT_rich Low_complexity Low_complexity 1 25 0 321 183 17 0 chr3 24996512 24996572 -202528006 - AluJo SINE Alu -122 180 120 657 159 0 43 chr3 24996586 24996724 -202527854 - FLAM_C SINE Alu -1 142 11 32 91 0 0 chr3 24996868 24996956 -202527622 + AT_rich Low_complexity Low_complexity 1 88 0 279 186 0 0 chr3 24997004 24997063 -202527515 - MER57A LTR ERV1 -28 375 317 430 311 0 25 chr3 24997346 24997465 -202527113 - L2 LINE L2 -2 3311 3196 248 284 11 0 chr3 24997628 24997716 -202526862 - L1M4 LINE L1 -3905 2241 2153 314 247 86 0 chr3 24997874 24997955 -202526623 - MIR SINE MIR 0 262 175 349 325 77 6 chr3 24998177 24998346 -202526232 - HAL1b LINE L1 -607 741 561 490 229 84 89 chr3 24998894 24999036 -202525542 + MIR SINE MIR 50 193 -69 1750 166 0 7 chr3 24999036 24999368 -202525210 + AluJb SINE Alu 1 330 0 490 229 84 89 chr3 24999368 24999438 -202525140 + MIR SINE MIR 193 262 0 2013 144 0 0 chr3 25000605 25000904 -202523674 + AluSx SINE Alu 1 299 -13 264 202 0 53 chr3 25001666 25001760 -202522818 + T-rich Low_complexity Low_complexity 5 93 0 284 218 26 0 chr3 25002205 25002283 -202522295 - MER5C DNA MER1_type -168 156 77 470 265 61 30 chr3 25002492 25002624 -202521954 - MIR SINE MIR -10 252 117 701 126 8 17 chr3 25002664 25002783 -202521795 - FLAM_A SINE Alu -15 118 1 23 33 0 0 chr3 25003017 25003047 -202521531 + AT_rich Low_complexity Low_complexity 1 30 0 267 79 0 0 chr3 25004203 25004241 -202520337 + (CA)n Simple_repeat Simple_repeat 2 39 0 629 191 72 0 chr3 25004444 25004596 -202519982 + MER45A DNA AcHobo 3 177 -1 282 224 56 88 chr3 25004650 25004775 -202519803 + MIR SINE MIR 113 233 -29 1562 181 44 3 chr3 25004903 25005196 -202519382 + AluSg SINE Alu 1 305 -5 24 32 0 0 chr3 25005406 25005437 -202519141 + AT_rich Low_complexity Low_complexity 1 31 0 1570 218 30 3 chr3 25006033 25006364 -202518214 - MER58B DNA MER1_type -1 340 1 2645 174 56 13 chr3 25006563 25007160 -202517418 + L1MB7 LINE L1 5548 6181 -2 2031 103 48 10 chr3 25008420 25008711 -202515867 + AluSc SINE Alu 1 302 -7 22 35 0 0 chr3 25011186 25011215 -202513363 + AT_rich Low_complexity Low_complexity 1 29 0 296 280 99 54 chr3 25011311 25011550 -202513028 - L1ME LINE L1 -404 5717 5473 212 290 9 56 chr3 25012660 25012767 -202511811 - L2 LINE L2 -60 3253 3152 1542 154 25 87 chr3 25012767 25013123 -202511455 - MER44D DNA MER2_type 0 609 6 180 0 0 0 chr3 25013123 25013143 -202511435 + (TACTG)n Simple_repeat Simple_repeat 1 20 0 438 20 0 0 chr3 25013174 25013225 -202511353 + (TG)n Simple_repeat Simple_repeat 2 52 0 213 262 16 0 chr3 25013233 25013294 -202511284 + L2 LINE L2 3208 3269 -3 411 333 56 14 chr3 25014580 25014796 -202509782 + MLT1L LTR MaLR 389 613 -2 25 51 0 0 chr3 25014932 25014971 -202509607 + AT_rich Low_complexity Low_complexity 1 39 0 677 298 12 0 chr3 25015318 25015489 -202509089 - MIR SINE MIR -89 173 1 400 305 62 59 chr3 25015522 25015698 -202508880 - L1ME LINE L1 -1495 4651 4472 1842 164 3 7 chr3 25015698 25015996 -202508582 - AluJo SINE Alu -15 297 1 400 305 62 59 chr3 25015996 25016140 -202508438 - L1ME LINE L1 -1674 4472 4330 27 81 0 0 chr3 25016468 25016530 -202508048 + AT_rich Low_complexity Low_complexity 1 62 0 313 341 171 24 chr3 25018136 25018347 -202506231 + MIR SINE MIR 2 243 -19 2563 124 18 0 chr3 25019568 25019964 -202504614 + MER57A LTR ERV1 1 403 0 222 323 39 31 chr3 25020338 25020465 -202504113 - MIR3 SINE MIR -16 192 65 22 0 0 0 chr3 25021458 25021480 -202503098 + AT_rich Low_complexity Low_complexity 1 22 0 1637 202 78 53 chr3 25021485 25021700 -202502878 - L1MC5 LINE L1 -44 7917 7709 1561 186 0 46 chr3 25021700 25022027 -202502551 + AluJo SINE Alu 1 312 0 1637 202 78 53 chr3 25022027 25022411 -202502167 - L1MC5 LINE L1 -252 7709 7303 771 237 237 49 chr3 25022449 25022897 -202501681 + MLT1G3 LTR MaLR 9 540 -27 824 188 31 71 chr3 25022910 25023134 -202501444 - L1MC5 LINE L1 -682 7279 7065 670 192 0 15 chr3 25024023 25024153 -202500425 + MLT1J1 LTR MaLR 20 147 -299 955 219 196 29 chr3 25024319 25024661 -202499917 + MLT1F LTR MaLR 136 534 -8 686 271 33 37 chr3 25024841 25025114 -202499464 + MLT1F-int LTR MaLR 292 563 -808 30 0 0 0 chr3 25025336 25025366 -202499212 + AT_rich Low_complexity Low_complexity 1 30 0 6620 54 18 8 chr3 25025513 25026385 -202498193 - L1PA7 LINE L1 -13 6141 5261 5687 92 0 0 chr3 25026375 25027171 -202497407 + L1P LINE L1 4408 5203 -943 * 625 171 45 0 chr3 25027179 25027290 -202497288 + MER20 DNA MER1_type 104 219 0 184 300 20 0 chr3 25027400 25027450 -202497128 + L2 LINE L2 3254 3304 -9 274 367 25 8 chr3 25027505 25027625 -202496953 + MIR3 SINE MIR 41 162 -46 237 313 62 0 chr3 25027800 25027880 -202496698 + L2 LINE L2 3229 3313 0 25 31 0 0 chr3 25028539 25028571 -202496007 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 25029712 25029742 -202494836 + AT_rich Low_complexity Low_complexity 1 30 0 263 150 0 0 chr3 25030015 25030055 -202494523 - U6 snRNA snRNA -66 41 2 520 222 167 11 chr3 25030074 25030254 -202494324 + MER3 DNA MER1_type 1 208 -1 24 53 0 0 chr3 25030258 25030296 -202494282 + AT_rich Low_complexity Low_complexity 1 38 0 1719 166 7 24 chr3 25030516 25030811 -202493767 - AluJb SINE Alu -22 290 1 197 261 98 54 chr3 25031354 25031446 -202493132 + MIR SINE MIR 120 215 -47 185 177 32 48 chr3 25031734 25031796 -202492782 - L2 LINE L2 -62 3251 3191 22 35 0 0 chr3 25032024 25032053 -202492525 + AT_rich Low_complexity Low_complexity 1 29 0 689 301 40 78 chr3 25032624 25033133 -202491445 + L2 LINE L2 2786 3296 -17 2125 154 39 31 chr3 25033476 25034020 -202490558 + MLT2A2 LTR ERVL 1 554 0 259 159 0 32 chr3 25034158 25034221 -202490357 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 317 253 12 12 chr3 25034227 25034310 -202490268 + L1MC4 LINE L1 6614 6696 -1346 367 228 86 10 chr3 25035371 25035494 -202489084 - MIR SINE MIR -41 167 73 1124 182 15 5 chr3 25036489 25036692 -202487886 - MER2 DNA MER2_type -135 210 6 22 56 0 0 chr3 25038409 25038445 -202486133 + AT_rich Low_complexity Low_complexity 1 36 0 741 169 42 131 chr3 25040915 25041151 -202483427 + MIR SINE MIR 2 216 -46 432 0 0 0 chr3 25041160 25041208 -202483370 + (CA)n Simple_repeat Simple_repeat 2 49 0 1208 183 24 62 chr3 25041219 25041508 -202483070 - AluJo SINE Alu -30 282 5 23 33 0 0 chr3 25041519 25041549 -202483029 + AT_rich Low_complexity Low_complexity 1 30 0 13942 137 37 7 chr3 25041959 25044302 -202480276 + Tigger1 DNA MER2_type 2 2414 -4 248 158 0 0 chr3 25044910 25044948 -202479630 - L2 LINE L2 -13 3300 3263 274 269 0 15 chr3 25045608 25045675 -202478903 - MIR SINE MIR -103 159 94 378 321 0 15 chr3 25046091 25046228 -202478350 + MER117 DNA MER1_type 12 146 -51 23 33 0 0 chr3 25046404 25046434 -202478144 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 25047963 25047984 -202476594 + AT_rich Low_complexity Low_complexity 1 21 0 241 239 231 30 chr3 25048294 25048428 -202476150 - MIR SINE MIR -51 211 51 1921 146 0 7 chr3 25048465 25048766 -202475812 + AluJb SINE Alu 3 301 -11 183 290 43 65 chr3 25049011 25049104 -202475474 - MIR SINE MIR -56 206 116 237 178 0 0 chr3 25051512 25051557 -202473021 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 28 0 0 0 chr3 25053216 25053244 -202471334 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 25054177 25054205 -202470373 + AT_rich Low_complexity Low_complexity 1 28 0 355 287 111 49 chr3 25055952 25056196 -202468382 + L1M4 LINE L1 3 261 -6281 2293 135 19 6 chr3 25056399 25056763 -202467815 - THE1C LTR MaLR -6 369 1 8926 111 37 94 chr3 25056769 25058433 -202466145 - THE1C-int LTR MaLR -12 1568 1 2551 109 5 11 chr3 25058433 25058810 -202465768 - THE1C LTR MaLR 0 375 1 249 158 0 61 chr3 25058915 25058997 -202465581 - THE1C LTR MaLR -297 78 2 397 272 25 38 chr3 25059039 25059215 -202465363 + L1M4 LINE L1 533 926 -5720 569 253 65 7 chr3 25059511 25059665 -202464913 + MIR SINE MIR 100 262 0 1677 196 86 24 chr3 25060242 25060615 -202463963 + MSTD LTR MaLR 1 396 0 198 0 0 0 chr3 25060868 25060890 -202463688 + (TG)n Simple_repeat Simple_repeat 1 22 0 347 160 13 0 chr3 25060894 25060969 -202463609 + GA-rich Low_complexity Low_complexity 1 76 0 184 265 118 0 chr3 25061040 25061108 -202463470 - MER5B DNA MER1_type -78 100 25 2357 113 19 11 chr3 25061630 25062002 -202462576 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr3 25062232 25062279 -202462299 + AT_rich Low_complexity Low_complexity 1 47 0 1640 169 33 0 chr3 25063649 25063922 -202460656 + AluJb SINE Alu 1 282 -30 1908 154 0 0 chr3 25063939 25064243 -202460335 - AluSx SINE Alu 0 308 5 382 272 204 59 chr3 25064481 25064981 -202459597 - L2 LINE L2 0 3313 2738 313 253 40 73 chr3 25065208 25065358 -202459220 + L1ME LINE L1 3 147 -5923 243 287 39 23 chr3 25065830 25065959 -202458619 + L1ME LINE L1 329 459 -5611 267 287 32 11 chr3 25066036 25066130 -202458448 + L1ME LINE L1 447 542 -5541 215 209 31 31 chr3 25066157 25066286 -202458292 + GA-rich Low_complexity Low_complexity 4 132 0 512 240 42 31 chr3 25066294 25066486 -202458092 + L1ME LINE L1 542 735 -5345 1545 202 42 42 chr3 25066506 25066932 -202457646 + LTR56 LTR ERV1 20 445 0 700 220 39 35 chr3 25066979 25067238 -202457340 + L1ME LINE L1 787 1046 -5037 200 217 0 0 chr3 25067532 25067578 -202457000 + A-rich Low_complexity Low_complexity 1 46 0 536 264 52 20 chr3 25067639 25067889 -202456689 - L1ME4a LINE L1 -187 5934 5677 309 218 13 39 chr3 25068550 25068628 -202455950 + MER58 DNA MER1_type 27 102 -113 563 195 235 23 chr3 25068673 25068830 -202455748 - MER5C DNA MER1_type -54 270 148 1814 170 12 23 chr3 25068830 25069172 -202455406 + MER44D DNA MER2_type 1 608 -1 563 195 235 23 chr3 25069172 25069235 -202455343 - MER5C DNA MER1_type -176 148 3 655 346 213 28 chr3 25069597 25069996 -202454582 - L2 LINE L2 -710 2604 2280 2175 72 10 3 chr3 25069996 25070287 -202454291 + AluY SINE Alu 1 293 -18 655 346 213 28 chr3 25070287 25070967 -202453611 - L2 LINE L2 -1034 2280 1325 366 256 0 22 chr3 25071318 25071408 -202453170 + FRAM/FAM SINE Alu 1 86 -80 * 4909 141 9 20 chr3 25071407 25072246 -202452332 - Tigger1 DNA MER2_type -570 1848 1019 12194 117 16 25 chr3 25072258 25074645 -202449933 + L1P3 LINE L1 6 2413 -4048 2209 81 6 31 chr3 25074614 25074936 -202449642 + L1PA7 LINE L1 5623 5936 -533 * 1139 62 0 0 chr3 25074936 25075078 -202449500 + L1PA7 LINE L1 6312 6457 -12 965 105 37 19 chr3 25075078 25075240 -202449338 + AluSq SINE Alu 134 298 -15 659 96 0 0 chr3 25075241 25075335 -202449243 + L1M1 LINE L1 2626 2719 -4846 * 2259 134 37 68 chr3 25075332 25075941 -202448637 + L1M1 LINE L1 3266 3876 -3689 215 152 0 0 chr3 25276379 25276412 -202248166 - MIR SINE MIR -10 252 220 235 301 140 0 chr3 25276999 25277092 -202247486 - MER94 DNA DNA -1 133 28 200 367 42 33 chr3 25277419 25277539 -202247039 + L2 LINE L2 3145 3265 -7 401 273 64 48 chr3 25279168 25279355 -202245223 + MIR3 SINE MIR 19 208 0 237 98 0 0 chr3 25280143 25280184 -202244394 + (A)n Simple_repeat Simple_repeat 1 41 0 213 121 0 0 chr3 25281105 25281138 -202243440 + (A)n Simple_repeat Simple_repeat 1 33 0 459 0 0 0 chr3 25281141 25281192 -202243386 + (CA)n Simple_repeat Simple_repeat 1 51 0 211 170 0 43 chr3 25282421 25282468 -202242110 + CT-rich Low_complexity Low_complexity 3 47 0 474 273 35 42 chr3 25283191 25283334 -202241244 - MIR3 SINE MIR -34 174 33 1035 172 10 34 chr3 25285688 25285897 -202238681 - MER3 DNA MER1_type -5 204 1 210 294 0 0 chr3 25286931 25286982 -202237596 - MIR3 SINE MIR -7 201 151 295 330 56 30 chr3 25287085 25287282 -202237296 - MIR3 SINE MIR -4 204 3 607 286 70 46 chr3 25287789 25288030 -202236548 + MIR SINE MIR 10 256 -6 1325 208 124 67 chr3 25288103 25288579 -202235999 + MLT1D LTR MaLR 3 505 0 246 128 0 0 chr3 25289254 25289293 -202235285 + (A)n Simple_repeat Simple_repeat 1 39 0 1544 196 32 4 chr3 25289801 25290081 -202234497 + AluJb SINE Alu 1 288 -24 330 269 110 44 chr3 25290130 25290312 -202234266 - MARNA DNA Mariner -210 376 183 328 267 114 58 chr3 25290735 25290931 -202233647 + MIR3 SINE MIR 9 214 -48 233 217 0 0 chr3 25291176 25291222 -202233356 + A-rich Low_complexity Low_complexity 5 50 0 318 50 0 0 chr3 25291260 25291300 -202233278 + (GA)n Simple_repeat Simple_repeat 1 40 0 201 258 98 45 chr3 25292302 25292434 -202232144 + L2 LINE L2 1379 1517 -1797 373 125 16 0 chr3 25292557 25292621 -202231957 - MSTD LTR MaLR 0 396 332 491 168 198 0 chr3 25293245 25293346 -202231232 - MER5B DNA MER1_type -57 121 1 321 208 185 77 chr3 25293792 25293886 -202230692 + MER5A DNA MER1_type 35 149 -40 809 112 0 9 chr3 25293886 25294054 -202230524 + FLAM_C SINE Alu 2 168 0 321 208 185 77 chr3 25294054 25294088 -202230490 + MER5A DNA MER1_type 149 178 -11 199 298 0 85 chr3 25294782 25294876 -202229702 - MIR SINE MIR -60 202 117 1196 238 107 56 chr3 25295015 25295465 -202229113 + L2 LINE L2 2841 3313 0 372 293 47 0 chr3 25295463 25295569 -202229009 - MIR SINE MIR -65 197 87 * 725 152 27 38 chr3 25295571 25295755 -202228823 + MER53 DNA DNA 1 182 -7 373 311 43 51 chr3 25297038 25297295 -202227283 + MLT1K LTR MaLR 169 423 -165 269 273 0 0 chr3 25297422 25297488 -202227090 + MLT1K LTR MaLR 517 582 -6 198 238 16 79 chr3 25297505 25297568 -202227010 - MIR SINE MIR -111 151 93 653 231 98 0 chr3 25297649 25297852 -202226726 + MER112 DNA MER1_type 1 223 -37 860 311 202 10 chr3 25298159 25298481 -202226097 + L2 LINE L2 2237 2496 -817 2217 124 21 32 chr3 25298481 25298860 -202225718 - THE1C LTR MaLR 0 375 1 860 311 202 10 chr3 25298860 25299361 -202225217 + L2 LINE L2 2496 3217 -96 370 268 179 0 chr3 25299361 25299529 -202225049 - MER110 LTR ERV1 0 491 294 4232 46 51 2 chr3 25299547 25300092 -202224486 - L1PA7 LINE L1 -8 6146 5575 2106 131 20 0 chr3 25300106 25300411 -202224167 - AluJb SINE Alu -1 311 1 329 192 192 24 chr3 25300411 25300536 -202224042 - MER110A LTR ERV1 -127 341 196 305 226 173 12 chr3 25300597 25300765 -202223813 - MER110A LTR ERV1 -273 195 1 353 233 14 0 chr3 25300782 25300855 -202223723 + MIR SINE MIR 189 262 0 1939 137 60 64 chr3 25301398 25301867 -202222711 - LTR37B LTR ERV1 -1 467 1 207 0 0 0 chr3 25302001 25302024 -202222554 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 233 116 0 23 chr3 25304526 25304569 -202220009 + (TC)n Simple_repeat Simple_repeat 1 42 0 2423 184 39 28 chr3 25304644 25305188 -202219390 + MER44D DNA MER2_type 1 605 0 319 206 98 11 chr3 25305229 25305321 -202219257 - L1MCa LINE L1 -4335 2091 1992 309 183 17 9 chr3 25305326 25305441 -202219137 + (TA)n Simple_repeat Simple_repeat 2 117 0 213 178 0 22 chr3 25306279 25306324 -202218254 - L2 LINE L2 0 3313 3270 236 229 76 93 chr3 25309338 25309401 -202215177 + MER5B DNA MER1_type 1 63 -115 513 0 0 0 chr3 25309401 25309458 -202215120 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 236 229 76 93 chr3 25309458 25309512 -202215066 + MER5B DNA MER1_type 63 116 -62 250 171 0 0 chr3 25309768 25309809 -202214769 - MIR SINE MIR -71 137 97 425 294 46 111 chr3 25310004 25310372 -202214206 - L2 LINE L2 0 3272 2929 836 312 90 16 chr3 25310691 25311259 -202213319 - MLT1L LTR MaLR -2 586 9 548 295 193 0 chr3 25312050 25312257 -202212321 + MIR SINE MIR 1 247 -15 2265 152 9 37 chr3 25312669 25312996 -202211582 + MSTB1 LTR MaLR 5 319 -113 2861 7 0 0 chr3 25312996 25313306 -202211272 - AluYa5 SINE Alu -1 310 1 2265 152 9 37 chr3 25313306 25313411 -202211167 + MSTB1 LTR MaLR 319 425 -7 298 296 112 13 chr3 25313427 25313579 -202210999 - MIR SINE MIR -48 214 48 521 243 73 73 chr3 25313690 25313962 -202210616 - MLT1H LTR MaLR -221 328 57 948 131 65 0 chr3 25314523 25314676 -202209902 + MER5A DNA MER1_type 1 163 -26 30 0 0 0 chr3 25315416 25315446 -202209132 + AT_rich Low_complexity Low_complexity 1 30 0 2251 106 0 3 chr3 25315607 25315921 -202208657 - AluSc SINE Alu 0 309 1 201 196 0 0 chr3 25316573 25316619 -202207959 + GA-rich Low_complexity Low_complexity 4 49 0 31 0 0 0 chr3 25316665 25316696 -202207882 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 95 24 chr3 25317231 25317357 -202207221 + L2 LINE L2 3138 3272 0 473 249 44 68 chr3 25318383 25318588 -202205990 + MIR SINE MIR 8 207 -55 232 195 0 0 chr3 25318652 25318693 -202205885 - Alu SINE Alu -176 126 86 795 230 83 15 chr3 25318693 25318897 -202205681 - AluJo SINE Alu -92 220 3 1279 208 27 46 chr3 25318955 25319321 -202205257 + L1M4 LINE L1 3976 4334 -1812 466 303 7 14 chr3 25319322 25319467 -202205111 + MIR SINE MIR 110 253 -9 735 259 162 44 chr3 25319483 25320001 -202204577 + L3 LINE CR1 858 1436 -141 267 327 35 9 chr3 25320006 25320119 -202204459 - MIR SINE MIR -111 151 36 7158 28 2 2 chr3 25321555 25322800 -202201778 + L1PA4 LINE L1 4908 6151 -4 326 294 33 0 chr3 25323028 25323120 -202201458 + MIR SINE MIR 53 147 -61 202 200 0 0 chr3 25323367 25323407 -202201171 + CT-rich Low_complexity Low_complexity 2 41 0 296 217 75 19 chr3 25323735 25323841 -202200737 - MER103 DNA DNA -45 121 10 19275 158 21 6 chr3 25323875 25327324 -202197254 + L1M1 LINE L1 10 3512 -4053 2275 97 15 59 chr3 25327324 25327716 -202196862 + L1MA1 LINE L1 5928 6302 0 19275 158 21 6 chr3 25327716 25327736 -202196842 + L1M1 LINE L1 3512 3530 -4035 260 268 37 0 chr3 25327998 25328080 -202196498 - MLT1K LTR MaLR -23 565 481 679 288 57 5 chr3 25328121 25328333 -202196245 - MLT1K LTR MaLR -186 402 180 344 181 14 14 chr3 25328362 25328434 -202196144 - MLT1K LTR MaLR -505 83 12 459 271 8 31 chr3 25329046 25329175 -202195403 - L2 LINE L2 0 3313 3188 1959 137 3 40 chr3 25329336 25329686 -202194892 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr3 25331940 25331968 -202192610 + AT_rich Low_complexity Low_complexity 1 28 0 238 233 86 55 chr3 25332993 25333156 -202191422 + HAL1 LINE L1 1002 1169 -1338 771 273 101 12 chr3 25333178 25333665 -202190913 + HAL1 LINE L1 1234 1763 -744 311 233 10 124 chr3 25334200 25334402 -202190176 + LTR16A LTR ERVL 266 444 -6 320 301 0 0 chr3 25334560 25334653 -202189925 + HAL1 LINE L1 1823 1915 -592 340 217 174 9 chr3 25334743 25334858 -202189720 + MIR SINE MIR 79 212 -50 22 35 0 0 chr3 25336297 25336326 -202188252 + AT_rich Low_complexity Low_complexity 1 29 0 191 61 30 0 chr3 25337259 25337292 -202187286 + (CA)n Simple_repeat Simple_repeat 2 35 0 1435 237 122 37 chr3 25337582 25337805 -202186773 + L2 LINE L2 2427 2630 -683 1922 149 7 13 chr3 25337805 25338106 -202186472 + AluSq SINE Alu 1 299 -14 1435 237 122 37 chr3 25338106 25338463 -202186115 + L2 LINE L2 2630 3062 -251 572 210 198 0 chr3 25339155 25339317 -202185261 + L2 LINE L2 3103 3296 -17 1702 169 10 24 chr3 25339325 25339615 -202184963 + AluJo SINE Alu 1 286 -26 279 0 0 0 chr3 25339617 25339648 -202184930 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 237 250 0 chr3 25340118 25340194 -202184384 - MIR SINE MIR 0 262 168 1558 205 103 140 chr3 25340568 25340949 -202183629 + Charlie7 DNA MER1_type 490 884 -1728 2399 87 10 10 chr3 25340949 25341261 -202183317 - AluSq SINE Alu -1 312 1 1558 205 103 140 chr3 25341261 25342148 -202182430 + Charlie7 DNA MER1_type 884 1711 -901 2781 0 0 0 chr3 25343092 25343390 -202181188 - AluYa5 SINE Alu -13 298 1 1386 19 0 0 chr3 25343517 25343672 -202180906 - AluY SINE Alu 0 311 157 1380 233 94 40 chr3 25343672 25344224 -202180354 + Charlie7 DNA MER1_type 1855 2455 -157 2385 97 0 0 chr3 25344224 25344524 -202180054 - AluSc SINE Alu -9 300 1 1380 233 94 40 chr3 25344524 25344674 -202179904 + Charlie7 DNA MER1_type 2455 2595 -17 711 269 0 12 chr3 25344685 25344856 -202179722 + MER5A DNA MER1_type 1 169 -20 659 236 152 11 chr3 25345654 25345845 -202178733 - MIR SINE MIR -18 244 27 569 79 11 22 chr3 25347385 25347474 -202177104 - L1PB4 LINE L1 -556 5600 5513 * 815 153 60 22 chr3 25347468 25347651 -202176927 + L1PB4 LINE L1 5587 5776 -380 2090 161 15 10 chr3 25348946 25349337 -202175241 + L1PB4 LINE L1 5763 6155 -1 864 268 9 18 chr3 25349410 25349630 -202174948 - MIR SINE MIR 0 262 45 2259 121 0 0 chr3 25349694 25349999 -202174579 + AluSx SINE Alu 1 305 -7 309 278 0 0 chr3 25350000 25350072 -202174506 - MIR SINE MIR -189 73 2 291 289 77 51 chr3 25350887 25351043 -202173535 + MLT1L LTR MaLR 425 584 -31 784 198 97 34 chr3 25351257 25351464 -202173114 - LTR50 LTR ERVL -575 220 1 450 316 40 20 chr3 25352676 25352828 -202171750 + MIR SINE MIR 12 166 -96 325 268 149 57 chr3 25352843 25353213 -202171365 - MLT1J LTR MaLR -33 478 75 286 194 97 43 chr3 25353269 25353362 -202171216 + MIR SINE MIR 158 255 -7 689 272 93 57 chr3 25353422 25353723 -202170855 + MLT1I LTR MaLR 98 409 0 392 303 14 28 chr3 25354304 25354449 -202170129 - MIR SINE MIR -19 243 101 268 365 19 0 chr3 25354484 25354588 -202169990 - MIR SINE MIR -153 109 4 23 54 0 0 chr3 25355066 25355103 -202169475 + AT_rich Low_complexity Low_complexity 1 37 0 315 0 0 0 chr3 25355159 25355194 -202169384 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1062 267 29 3 chr3 25355259 25355574 -202169004 + L1MC/D LINE L1 5454 5776 -2032 251 219 31 47 chr3 25355804 25355868 -202168710 - L2 LINE L2 0 3272 3210 18537 131 21 11 chr3 25355952 25358971 -202165607 + L1MA3 LINE L1 17 3065 -4500 23675 37 42 3 chr3 25358977 25362095 -202162483 + L1P LINE L1 4 3244 -2902 1712 19 14 14 chr3 25362119 25362332 -202162246 + L1PA2 LINE L1 5943 6155 0 619 124 0 8 chr3 25362333 25362454 -202162124 + L1MA3 LINE L1 3053 3172 -4393 * 14935 159 19 10 chr3 25362443 25366719 -202157859 + L1MA3 LINE L1 3411 7724 0 517 245 9 9 chr3 25367308 25367414 -202157164 - L2 LINE L2 0 3313 3208 2589 179 102 21 chr3 25367706 25368202 -202156376 - MLT1F1 LTR MaLR -2 565 24 2241 110 0 10 chr3 25368202 25368503 -202156075 - AluSx SINE Alu -14 298 1 2589 179 102 21 chr3 25368503 25368527 -202156051 - MLT1F1 LTR MaLR -543 24 3 670 242 86 121 chr3 25369331 25369868 -202154710 + LTR67 LTR ERVL 40 557 0 2279 117 53 39 chr3 25370147 25370506 -202154072 + THE1B LTR MaLR 1 364 0 2303 92 10 0 chr3 25370753 25371056 -202153522 - AluY SINE Alu -5 306 1 488 272 38 19 chr3 25371088 25371246 -202153332 + L2 LINE L2 3153 3313 0 306 347 105 0 chr3 25371317 25371484 -202153094 - MIR3 SINE MIR -59 149 3 550 303 23 46 chr3 25372188 25372460 -202152118 + MLT1I LTR MaLR 51 320 -89 404 243 39 10 chr3 25372467 25372570 -202152008 + MLT1I LTR MaLR 442 547 -2 519 281 58 36 chr3 25374225 25374364 -202150214 - MER91A DNA MER1_type -36 160 19 1389 229 134 58 chr3 25374655 25375216 -202149362 + MLT1E LTR MaLR 1 515 -27 1062 257 88 64 chr3 25375325 25375734 -202148844 - MLT1E LTR MaLR -174 419 1 193 328 85 37 chr3 25375801 25375990 -202148588 + L2 LINE L2 2558 2755 -559 2647 136 23 59 chr3 25376019 25376060 -202148518 - MSTB LTR MaLR -1 425 384 2170 132 3 0 chr3 25376060 25376370 -202148208 + AluSx SINE Alu 1 311 -1 2647 136 23 59 chr3 25376370 25376769 -202147809 - MSTB LTR MaLR -42 384 1 235 248 83 74 chr3 25376799 25376920 -202147658 + L2 LINE L2 2858 2979 -293 2220 101 0 31 chr3 25377075 25377392 -202147186 - AluSx SINE Alu -5 307 1 355 246 237 9 chr3 25378127 25378241 -202146337 - MIR SINE MIR -46 216 77 191 256 56 44 chr3 25379173 25379263 -202145315 + L2 LINE L2 2668 2758 -556 768 213 21 53 chr3 25379276 25379464 -202145114 - MER5A DNA MER1_type -6 183 2 1135 314 156 28 chr3 25379497 25381405 -202143173 + L2 LINE L2 833 3054 -218 697 143 0 0 chr3 25381503 25381601 -202142977 + AluJb SINE Alu 196 293 -19 217 269 39 39 chr3 25381628 25381706 -202142872 + L2 LINE L2 3235 3312 -1 767 256 77 16 chr3 25381770 25382016 -202142562 - MIR SINE MIR -1 261 1 860 220 55 22 chr3 25382144 25382326 -202142252 - MER5A DNA MER1_type -1 188 1 493 312 19 39 chr3 25382597 25382802 -202141776 - MIR SINE MIR -50 212 12 1630 183 0 27 chr3 25384935 25385235 -202139343 + AluJo SINE Alu 1 292 -20 2349 118 0 0 chr3 25385294 25385607 -202138971 + AluSq SINE Alu 1 313 0 274 258 80 20 chr3 25385829 25385980 -202138598 + L2 LINE L2 2511 2670 -644 1163 182 104 9 chr3 25386031 25386262 -202138316 + AluJo SINE Alu 1 253 -59 241 295 38 19 chr3 25386263 25386368 -202138210 + L2 LINE L2 2701 2807 -507 227 360 0 0 chr3 25387028 25387117 -202137461 - L2 LINE L2 0 3313 3225 484 302 102 42 chr3 25387252 25387692 -202136886 + L1ME4a LINE L1 4219 4720 -1426 2306 237 43 38 chr3 25387692 25388279 -202136299 - MLT1E LTR MaLR 0 593 4 484 302 102 42 chr3 25388279 25388553 -202136025 + L1ME4a LINE L1 4720 4976 -1170 259 283 111 0 chr3 25388712 25388811 -202135767 - MIR SINE MIR -39 223 114 2627 224 14 36 chr3 25388841 25389421 -202135157 - MLT1F1 LTR MaLR 0 567 1 180 194 28 0 chr3 25389421 25389457 -202135121 - MIR SINE MIR -210 52 16 499 120 10 100 chr3 25389497 25389597 -202134981 + MER7C DNA MER2_type 62 152 -450 * 1603 131 8 0 chr3 25389585 25389822 -202134756 + MER7C DNA MER2_type 374 612 0 447 332 61 32 chr3 25389842 25390222 -202134356 + L1ME4a LINE L1 4967 5363 -783 852 235 0 0 chr3 25390225 25390395 -202134183 + AluJb SINE Alu 138 307 -5 855 267 96 54 chr3 25390427 25390470 -202134108 + L1ME4a LINE L1 5391 5431 -690 1670 151 17 41 chr3 25390470 25390761 -202133817 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr3 25390768 25390794 -202133784 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 855 267 96 54 chr3 25390794 25391387 -202133191 + L1ME4a LINE L1 5436 6062 -59 324 302 38 20 chr3 25392978 25393119 -202131459 + MIR SINE MIR 16 160 -64 245 91 0 23 chr3 25394308 25394352 -202130226 - MADE1 DNA Mariner -37 43 1 263 299 103 38 chr3 25394352 25394536 -202130042 - MLT1J2 LTR MaLR -2 448 253 416 293 0 32 chr3 25395207 25395330 -202129248 + MIR3 SINE MIR 49 167 -41 2111 132 0 0 chr3 25395404 25395693 -202128885 - AluSc SINE Alu -20 289 1 324 335 45 39 chr3 25396313 25396468 -202128110 - L2 LINE L2 -534 2780 2625 926 203 122 27 chr3 25396763 25397058 -202127520 - MER5C DNA MER1_type -1 323 1 196 262 213 21 chr3 25397651 25397792 -202126786 - MIR SINE MIR -2 260 93 2625 163 29 98 chr3 25397980 25398070 -202126508 - L1MD3 LINE L1 0 7995 7900 258 114 23 0 chr3 25398070 25398114 -202126464 + Charlie1 DNA MER1_type 2283 2327 -434 2625 163 29 98 chr3 25398114 25398139 -202126439 - L1MD3 LINE L1 -95 7900 7875 3790 71 2 0 chr3 25398139 25398604 -202125974 - L1PA8 LINE L1 -1 6171 5706 2625 163 29 98 chr3 25398604 25399134 -202125444 - L1MD3 LINE L1 -120 7875 7188 505 202 78 98 chr3 25399366 25399559 -202125019 + MLT1J LTR MaLR 7 195 -316 1501 191 65 46 chr3 25399612 25400025 -202124553 - Charlie4a DNA MER1_type 0 508 88 7240 151 84 12 chr3 25400292 25400679 -202123899 - Charlie1a DNA MER1_type -1310 1451 1093 567 29 0 0 chr3 25400679 25400748 -202123830 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 7240 151 84 12 chr3 25400748 25401713 -202122865 - Charlie1a DNA MER1_type -1668 1093 1 1007 204 21 39 chr3 25401862 25402142 -202122436 + pTR5 LTR ERV1 743 1017 -1421 6688 99 127 102 chr3 25402432 25403821 -202120757 + pTR5 LTR ERV1 1015 2438 0 760 197 27 58 chr3 25404225 25404287 -202120291 - MER5A DNA MER1_type 0 189 127 2357 88 3 3 chr3 25404287 25404592 -202119986 + AluSp SINE Alu 1 305 -8 760 197 27 58 chr3 25404592 25404717 -202119861 - MER5A DNA MER1_type -62 127 8 821 284 32 28 chr3 25405236 25405400 -202119178 + MIR SINE MIR 8 175 -87 1412 159 45 139 chr3 25405400 25405803 -202118775 + MLT1A1 LTR MaLR 1 365 0 821 284 32 28 chr3 25405803 25405888 -202118690 + MIR SINE MIR 175 258 -4 1819 151 36 20 chr3 25406010 25406314 -202118264 - AluSq SINE Alu -4 309 1 2288 136 40 11 chr3 25406903 25407257 -202117321 - THE1B LTR MaLR 0 364 1 226 364 23 11 chr3 25407367 25407455 -202117123 + L2 LINE L2 323 411 -2903 254 382 31 18 chr3 25407494 25407719 -202116859 + L2 LINE L2 2189 2416 -898 1354 192 16 49 chr3 25407719 25407940 -202116638 + MLT1F LTR MaLR 255 429 -76 2438 87 3 0 chr3 25407940 25408239 -202116339 - AluSp SINE Alu -13 300 1 1354 192 16 49 chr3 25408239 25408308 -202116270 + MLT1F LTR MaLR 429 499 -6 184 313 0 0 chr3 25408311 25408359 -202116219 - L2 LINE L2 -69 3244 3197 491 359 90 16 chr3 25408455 25408820 -202115758 + L2 LINE L2 711 1102 -2212 512 269 20 27 chr3 25408909 25409058 -202115520 + LTR16C LTR ERVL 85 232 -259 319 324 55 28 chr3 25409370 25409552 -202115026 + L2 LINE L2 1891 2077 -1237 214 301 65 41 chr3 25409595 25409718 -202114860 + L2 LINE L2 2550 2675 -639 1648 250 72 58 chr3 25410313 25410896 -202113682 - MLT1E LTR MaLR 0 593 3 1460 244 140 32 chr3 25411015 25411507 -202113071 + MLT1H LTR MaLR 1 545 -4 215 53 0 53 chr3 25412271 25412309 -202112269 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1121 182 36 9 chr3 25412636 25412861 -202111717 - MER96B DNA MER1_type? -3 414 184 2423 89 0 0 chr3 25414078 25414380 -202110198 - AluSq SINE Alu -11 302 1 2452 86 0 0 chr3 25414969 25415271 -202109307 - AluSx SINE Alu -10 302 1 329 296 55 27 chr3 25415303 25415560 -202109018 - L1M4 LINE L1 -3045 3101 2838 2862 163 48 6 chr3 25415566 25416089 -202108489 + L1MB7 LINE L1 5639 6183 -1 302 164 33 0 chr3 25416232 25416293 -202108285 - L1ME3A LINE L1 -17 6153 6091 2582 46 0 3 chr3 25416380 25416686 -202107892 - AluY SINE Alu -6 305 1 257 208 0 0 chr3 25416701 25416749 -202107829 + LTR16A1 LTR ERVL 410 457 0 224 284 25 37 chr3 25417125 25417206 -202107372 + MIR SINE MIR 70 149 -59 632 234 137 37 chr3 25417973 25418323 -202106255 + L1MC4 LINE L1 7658 8042 0 223 162 0 0 chr3 25418407 25418444 -202106134 + L2 LINE L2 3020 3056 -257 287 264 61 91 chr3 25418913 25419020 -202105558 - L2 LINE L2 0 3313 3213 906 225 115 10 chr3 25419020 25419220 -202105358 + MER58A DNA MER1_type 3 223 -1 287 264 61 91 chr3 25419220 25419309 -202105269 - L2 LINE L2 -100 3213 3123 375 345 52 15 chr3 25419498 25419765 -202104813 - L2 LINE L2 -411 2903 2627 1331 263 167 30 chr3 25419771 25420291 -202104287 + MLT2F LTR ERVL 3 612 -51 2101 108 0 4 chr3 25420291 25420590 -202103988 - AluSc SINE Alu 0 298 1 1331 263 167 30 chr3 25420590 25420642 -202103936 + MLT2F LTR ERVL 612 655 -8 246 324 15 0 chr3 25420646 25420714 -202103864 - L2 LINE L2 -687 2627 2559 672 285 40 60 chr3 25420728 25421026 -202103552 + MLT1I LTR MaLR 33 324 -85 229 265 176 10 chr3 25421065 25421167 -202103411 - L2 LINE L2 -742 2572 2454 948 260 150 59 chr3 25422025 25422408 -202102170 + MLT2F LTR ERVL 101 544 -119 2451 76 3 0 chr3 25422408 25422709 -202101869 + AluY SINE Alu 1 302 -9 948 260 150 59 chr3 25422709 25422837 -202101741 + MLT2F LTR ERVL 544 659 -4 4265 169 42 34 chr3 25423792 25423998 -202100580 + L1MB4 LINE L1 5263 5466 -714 198 0 0 0 chr3 25423998 25424020 -202100558 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4265 169 42 34 chr3 25424020 25424698 -202099880 + L1MB4 LINE L1 5466 6154 -26 23 54 0 0 chr3 25425134 25425171 -202099407 + AT_rich Low_complexity Low_complexity 1 37 0 1171 197 13 69 chr3 25426059 25426363 -202098215 + L1M3e LINE L1 1 287 -6743 2130 260 48 68 chr3 25426369 25427271 -202097307 + L1M3e LINE L1 1133 2018 -5012 1892 176 0 16 chr3 25427271 25427577 -202097001 + AluJb SINE Alu 1 301 -11 2130 260 48 68 chr3 25427577 25427605 -202096973 + L1M3e LINE L1 2018 2045 -4985 216 0 0 0 chr3 25527978 25528002 -201996576 + (A)n Simple_repeat Simple_repeat 1 24 0 287 321 71 48 chr3 25528471 25528576 -201996002 - MIR SINE MIR -56 206 94 2140 125 47 33 chr3 25528576 25528935 -201995643 + THE1B LTR MaLR 1 364 0 287 321 71 48 chr3 25528935 25528997 -201995581 - MIR SINE MIR -168 94 35 467 256 62 47 chr3 25529179 25529390 -201995188 + MIR SINE MIR 47 260 -2 496 264 46 27 chr3 25529467 25529669 -201994909 - MIR SINE MIR -60 202 2 1139 320 187 14 chr3 25531223 25532256 -201992322 + L2 LINE L2 1860 3085 -187 1474 236 94 39 chr3 25532438 25532951 -201991627 + MLT1H LTR MaLR 1 541 -8 201 121 0 0 chr3 25533924 25533957 -201990621 + (CA)n Simple_repeat Simple_repeat 1 33 0 446 302 100 22 chr3 25533966 25534557 -201990021 + L1MC4a LINE L1 5239 5403 -743 195 162 0 0 chr3 25534907 25534944 -201989634 + A-rich Low_complexity Low_complexity 1 37 0 371 263 32 0 chr3 25535768 25535863 -201988715 + L3 LINE CR1 1478 1575 -2 257 75 25 0 chr3 25537023 25537063 -201987515 + (CA)n Simple_repeat Simple_repeat 2 42 0 426 20 0 0 chr3 25537310 25537361 -201987217 + (CA)n Simple_repeat Simple_repeat 1 51 0 379 157 22 11 chr3 25538825 25538914 -201985664 + GA-rich Low_complexity Low_complexity 3 92 0 180 400 27 0 chr3 25540007 25540157 -201984421 + L2 LINE L2 2457 2610 -704 1276 242 76 18 chr3 25540159 25540539 -201984039 - MLT1I LTR MaLR -7 402 1 228 315 71 63 chr3 25540548 25540786 -201983792 + L2 LINE L2 2614 2853 -461 238 308 59 53 chr3 25540865 25541034 -201983544 + L2 LINE L2 2933 3102 -170 2335 144 7 61 chr3 25542017 25542474 -201982104 - MSTB1 LTR MaLR 0 432 1 521 310 66 33 chr3 25543293 25543657 -201980921 + MLT1I LTR MaLR 34 409 0 407 256 111 17 chr3 25544708 25544825 -201979753 - L2 LINE L2 0 3313 3186 201 256 0 0 chr3 25544868 25544911 -201979667 + MIR3 SINE MIR 112 154 -54 343 283 87 0 chr3 25544915 25545053 -201979525 + MER20B DNA MER1_type 6 155 -628 191 279 0 0 chr3 25545118 25545161 -201979417 + MIR3 SINE MIR 155 197 -11 324 178 22 67 chr3 25545727 25545817 -201978761 - MER5A DNA MER1_type -101 88 3 2468 49 7 10 chr3 25546126 25546430 -201978148 + AluY SINE Alu 1 303 -8 1689 73 0 0 chr3 25546756 25546976 -201977602 - L1PA5 LINE L1 0 6154 5935 251 279 33 49 chr3 25547053 25547175 -201977403 + MIR SINE MIR 127 246 -16 2662 218 50 70 chr3 25547661 25548150 -201976428 + L1ME1 LINE L1 4714 5211 -955 1298 123 90 14 chr3 25548150 25548427 -201976151 + L1MA8 LINE L1 5984 6281 -10 2662 218 50 70 chr3 25548427 25548525 -201976053 + L1ME1 LINE L1 5211 5309 -857 189 107 0 0 chr3 25548525 25548553 -201976025 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 2474 24 40 7 chr3 25548559 25548855 -201975723 - AluY SINE Alu -5 306 1 2662 218 50 70 chr3 25548855 25549749 -201974829 + L1ME1 LINE L1 5314 6164 -2 478 307 160 0 chr3 25550264 25550476 -201974102 - MIR SINE MIR 0 262 17 240 35 0 0 chr3 25551783 25551812 -201972766 + (TTG)n Simple_repeat Simple_repeat 2 30 0 453 302 6 11 chr3 25552452 25552631 -201971947 + (TA)n Simple_repeat Simple_repeat 2 179 0 23 33 0 0 chr3 25552830 25552860 -201971718 + AT_rich Low_complexity Low_complexity 1 30 0 234 265 74 0 chr3 25553792 25553869 -201970709 + MIR SINE MIR 40 121 -87 11041 35 1 2 chr3 25554043 25556148 -201968430 - L1PA5 LINE L1 -1 6153 4048 467 318 92 52 chr3 25556381 25556708 -201967870 - MLT1I LTR MaLR -2 407 68 325 280 22 83 chr3 25556772 25557054 -201967524 - L2 LINE L2 -219 3053 2734 25 31 0 0 chr3 25557133 25557165 -201967413 + AT_rich Low_complexity Low_complexity 1 32 0 532 215 110 37 chr3 25557291 25557454 -201967124 + MER5B DNA MER1_type 2 176 -2 1054 154 0 59 chr3 25557658 25557878 -201966700 + MER3 DNA MER1_type 3 209 0 303 226 0 0 chr3 25558118 25558180 -201966398 - Charlie8 DNA MER1_type -1003 1414 1353 314 258 72 0 chr3 25558180 25558277 -201966301 - Charlie8 DNA MER1_type -1928 489 386 256 300 0 0 chr3 25558478 25558538 -201966040 + MIR SINE MIR 89 148 -114 472 217 16 31 chr3 25558856 25558985 -201965593 - MLT1J LTR MaLR 0 511 385 1316 169 4 29 chr3 25559287 25559529 -201965049 - MER46A DNA MER2_type 0 236 1 333 0 0 0 chr3 25560038 25560075 -201964503 + (CA)n Simple_repeat Simple_repeat 1 37 0 369 217 0 0 chr3 25562358 25562427 -201962151 + L2 LINE L2 3185 3253 -19 255 341 124 0 chr3 25562504 25562633 -201961945 - MIR SINE MIR -72 190 46 2343 105 3 0 chr3 25563072 25563377 -201961201 - AluSx SINE Alu -6 306 1 566 152 0 1 chr3 25563460 25563551 -201961027 + MER33 DNA MER1_type 1 82 -88 288 0 0 0 chr3 25564281 25564313 -201960265 + (CA)n Simple_repeat Simple_repeat 2 33 0 373 238 266 0 chr3 25565206 25565349 -201959229 + MER5A DNA MER1_type 9 189 0 22 56 0 0 chr3 25566597 25566633 -201957945 + AT_rich Low_complexity Low_complexity 1 36 0 351 348 30 45 chr3 25566844 25567045 -201957533 + MIR SINE MIR 1 198 -64 444 242 30 0 chr3 25567046 25567145 -201957433 + L1MC4 LINE L1 6832 6933 -1109 1996 161 70 39 chr3 25567157 25567616 -201956962 + MLT1D LTR MaLR 33 505 0 2108 189 47 20 chr3 25568173 25568664 -201955914 + Charlie4a DNA MER1_type 5 508 0 308 278 68 45 chr3 25568691 25568824 -201955754 - L2 LINE L2 0 3313 3178 396 292 4 14 chr3 25568903 25569017 -201955561 + MER5A DNA MER1_type 11 110 -68 255 125 0 0 chr3 25569255 25569295 -201955283 + (A)n Simple_repeat Simple_repeat 1 40 0 609 166 159 6 chr3 25569783 25569940 -201954638 - MER96B DNA MER1_type? -236 181 1 2492 67 0 0 chr3 25570033 25570332 -201954246 - AluY SINE Alu -12 299 1 920 146 146 0 chr3 25571182 25571402 -201953176 + MER33 DNA MER1_type 51 302 -22 291 196 41 0 chr3 25571638 25571735 -201952843 + CT-rich Low_complexity Low_complexity 3 103 0 219 69 0 0 chr3 25572454 25572483 -201952095 + (T)n Simple_repeat Simple_repeat 1 29 0 811 282 58 32 chr3 25572962 25573239 -201951339 + MLT1G LTR MaLR 1 284 -306 316 233 216 23 chr3 25573561 25573737 -201950841 - L1M4 LINE L1 -1538 4608 4399 1644 211 32 22 chr3 25573815 25574185 -201950393 - MLT1A2 LTR MaLR 0 374 1 240 325 96 28 chr3 25574213 25574567 -201950011 - L1M4 LINE L1 -1908 4238 3861 394 327 0 0 chr3 25574593 25574697 -201949881 - L2 LINE L2 0 3313 3210 359 296 0 0 chr3 25574708 25574823 -201949755 - L1M4 LINE L1 -2320 3826 3712 463 264 66 61 chr3 25574902 25575311 -201949267 - L1M4 LINE L1 -1627 4519 4109 28 29 0 0 chr3 25575563 25575598 -201948980 + AT_rich Low_complexity Low_complexity 1 35 0 2165 113 3 7 chr3 25575744 25576054 -201948524 - AluSx SINE Alu -3 309 1 24 53 0 0 chr3 25576714 25576752 -201947826 + AT_rich Low_complexity Low_complexity 1 38 0 306 310 56 69 chr3 25577159 25577462 -201947116 - HAL1b LINE L1 -613 735 437 25 0 0 0 chr3 25579155 25579180 -201945398 + AT_rich Low_complexity Low_complexity 1 25 0 236 320 58 51 chr3 25579288 25579444 -201945134 + L2 LINE L2 2905 3061 -211 474 298 37 27 chr3 25580256 25580444 -201944134 + HsTC2b DNA Tc2 4 193 -722 412 289 112 53 chr3 25580902 25581495 -201943083 - LTR33A LTR ERVL 0 523 1 1149 160 29 19 chr3 25581765 25581971 -201942607 - MER20 DNA MER1_type -1 218 11 254 345 112 8 chr3 25583248 25583408 -201941170 + MIR3 SINE MIR 23 197 -11 1755 53 10 13 chr3 25583808 25584042 -201940536 - L1PA8A LINE L1 -471 5660 5428 1241 95 6 0 chr3 25584042 25584209 -201940369 + L1PA7 LINE L1 5972 6141 -13 1755 53 10 13 chr3 25584209 25584253 -201940325 - L1PA8A LINE L1 -703 5428 5385 2653 112 12 0 chr3 25585579 25585981 -201938597 + L1MA3 LINE L1 5899 6305 0 23 78 0 0 chr3 25586436 25586487 -201938091 + AT_rich Low_complexity Low_complexity 1 51 0 580 274 91 16 chr3 25587007 25587259 -201937319 + HAL1 LINE L1 1457 1727 -780 269 272 157 88 chr3 25587293 25587554 -201937024 + L2 LINE L2 3035 3313 0 2311 97 0 3 chr3 25587880 25588178 -201936400 + AluSx SINE Alu 1 297 -15 4751 218 44 55 chr3 25588379 25588510 -201936068 + L1PA12 LINE L1 2182 2313 -5271 2637 123 3 0 chr3 25588510 25588884 -201935694 + THE1C LTR MaLR 1 375 0 4751 218 44 55 chr3 25588884 25590789 -201933789 + L1PA12 LINE L1 2313 4315 -3269 999 139 6 23 chr3 25590789 25590961 -201933617 - L1PB2 LINE L1 -4 6147 5979 742 205 12 81 chr3 25590989 25591247 -201933331 + L1P LINE L1 5081 5320 -826 3693 85 59 24 chr3 25591250 25591828 -201932750 - L1PB2 LINE L1 -168 5983 5386 5283 138 36 0 chr3 25591828 25593185 -201931393 + L1PA16 LINE L1 4769 6166 0 1305 221 15 8 chr3 25593221 25593918 -201930660 + L1M4c LINE L1 2213 3069 -3313 1698 193 8 11 chr3 25593925 25594288 -201930290 + L1MA5 LINE L1 5939 6300 0 3337 169 43 19 chr3 25594294 25594591 -201929987 + L1MB3 LINE L1 5474 5762 -421 2016 187 120 31 chr3 25594591 25595067 -201929511 - MLT2B1 LTR ERVL -2 518 1 3337 169 43 19 chr3 25595067 25595460 -201929118 + L1MB3 LINE L1 5762 6181 -2 36 62 0 0 chr3 25595773 25595837 -201928741 + AT_rich Low_complexity Low_complexity 1 64 0 365 270 62 46 chr3 25595990 25596249 -201928329 + L1ME4a LINE L1 5615 5877 -244 22 56 0 0 chr3 25596400 25596436 -201928142 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr3 25596517 25596560 -201928018 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr3 25596673 25596711 -201927867 + AT_rich Low_complexity Low_complexity 1 38 0 1378 319 65 31 chr3 25596821 25597408 -201927170 + MLT1L LTR MaLR 9 615 0 894 340 89 10 chr3 25597724 25598115 -201926463 - LTR16A LTR ERVL -21 429 8 21 0 0 0 chr3 25600265 25600286 -201924292 + AT_rich Low_complexity Low_complexity 1 21 0 261 188 14 43 chr3 25600316 25600385 -201924193 + MER4-int LTR ERV1 1111 1177 -5421 270 153 153 0 chr3 25601906 25601965 -201922613 + MIR3 SINE MIR 87 154 -54 1968 137 7 0 chr3 25605704 25605989 -201918589 + AluSx SINE Alu 14 300 -12 653 67 11 0 chr3 25606148 25606237 -201918341 - THE1B LTR MaLR -2 362 273 2243 88 10 0 chr3 25606239 25606547 -201918031 - THE1-int LTR MaLR -1263 317 7 1868 175 103 17 chr3 25606552 25606969 -201917609 - MLT2A2 LTR ERVL 0 453 1 302 312 18 9 chr3 25606983 25607092 -201917486 + L1ME3A LINE L1 919 1028 -5091 28 0 0 0 chr3 25607136 25607164 -201917414 + AT_rich Low_complexity Low_complexity 1 28 0 1922 152 10 75 chr3 25607218 25607632 -201916946 + L1MA7 LINE L1 5900 6286 -5 1398 223 59 20 chr3 25608033 25608437 -201916141 + LTR52 LTR ERVL 1 420 -1 544 275 58 5 chr3 25609147 25609336 -201915242 + MIR SINE MIR 17 215 -47 207 0 0 0 chr3 25609724 25609747 -201914831 + (TTG)n Simple_repeat Simple_repeat 2 24 0 345 100 0 0 chr3 25610357 25610407 -201914171 + (TG)n Simple_repeat Simple_repeat 2 51 0 412 265 111 49 chr3 25611086 25611411 -201913167 + L1MEd LINE L1 561 905 -5214 21 0 0 0 chr3 25611416 25611437 -201913141 + AT_rich Low_complexity Low_complexity 1 21 0 2128 134 0 7 chr3 25611438 25611744 -201912834 + AluSq SINE Alu 1 304 -9 451 282 87 48 chr3 25611951 25612326 -201912252 + L1MEd LINE L1 1185 1630 -860 1419 214 72 38 chr3 25612330 25612774 -201911804 - L1ME2 LINE L1 -34 6130 5672 1698 165 84 0 chr3 25612989 25613322 -201911256 + MER46B DNA MER2_type 1 236 0 588 303 81 5 chr3 25613336 25613768 -201910810 + L1ME3A LINE L1 2852 3316 -2813 25 65 0 0 chr3 25613768 25613814 -201910764 + AT_rich Low_complexity Low_complexity 1 46 0 1025 192 126 19 chr3 25614317 25614578 -201910000 - AluJb SINE Alu -17 295 7 398 262 158 87 chr3 25615287 25615585 -201908993 + MLT1I LTR MaLR 65 383 -26 233 271 109 67 chr3 25615596 25615684 -201908894 + L1ME3A LINE L1 3600 3683 -2446 2372 110 8 8 chr3 25615684 25616039 -201908539 + THE1A LTR MaLR 1 355 0 10888 102 35 0 chr3 25616039 25617565 -201907013 + THE1A-int LTR MaLR 1 1580 0 2308 132 6 8 chr3 25617565 25617921 -201906657 + THE1A LTR MaLR 1 355 0 233 271 109 67 chr3 25617921 25618040 -201906538 + L1ME3A LINE L1 3682 3818 -2311 2475 65 0 0 chr3 25618404 25618713 -201905865 - AluY SINE Alu -2 309 1 820 239 93 8 chr3 25620689 25620925 -201903653 - MIR SINE MIR -11 251 2 725 271 105 72 chr3 25623376 25624743 -201899835 + L1ME3A LINE L1 3846 5256 -873 1120 302 74 38 chr3 25624829 25625492 -201899086 + L1ME3A LINE L1 5364 6050 -103 31 26 0 0 chr3 25625502 25625540 -201899038 + AT_rich Low_complexity Low_complexity 1 38 0 2490 70 0 0 chr3 25626062 25626363 -201898215 - AluY SINE Alu -10 301 1 283 275 0 14 chr3 25626577 25626646 -201897932 - MLT1K LTR MaLR -341 247 180 597 262 87 58 chr3 25626700 25626875 -201897703 + L2 LINE L2 2996 3185 -128 1426 183 55 124 chr3 25626875 25627416 -201897162 + MLT1D LTR MaLR 1 504 -1 597 262 87 58 chr3 25627416 25627549 -201897029 + L2 LINE L2 3185 3313 0 196 179 0 36 chr3 25628689 25628745 -201895833 + (TATG)n Simple_repeat Simple_repeat 3 56 0 793 204 39 29 chr3 25629307 25629513 -201895065 + MER3 DNA MER1_type 2 209 0 627 239 66 15 chr3 25630533 25630730 -201893848 - LTR16C LTR ERVL -12 479 273 1500 158 53 0 chr3 25631073 25631320 -201893258 + AluSx SINE Alu 35 294 -18 808 271 151 42 chr3 25632850 25633253 -201891325 - LTR33 LTR ERVL 0 521 75 329 197 56 92 chr3 25633292 25633434 -201891144 + L1ME LINE L1 5689 5825 -296 2409 74 0 0 chr3 25634242 25634541 -201890037 + AluSg SINE Alu 1 299 -11 349 262 56 37 chr3 25635727 25635834 -201888744 - MIR3 SINE MIR -85 123 15 1717 248 28 38 chr3 25637237 25637733 -201886845 + LTR16C LTR ERVL 1 491 0 545 317 134 18 chr3 25637735 25637959 -201886619 + MIR SINE MIR 10 259 -3 836 242 173 57 chr3 25637959 25638451 -201886127 - MLT1H1 LTR MaLR 0 555 7 330 87 0 0 chr3 25638455 25638501 -201886077 + (TTA)n Simple_repeat Simple_repeat 2 47 0 231 378 60 32 chr3 25638647 25638896 -201885682 + L2 LINE L2 2529 2784 -530 641 299 58 53 chr3 25639969 25640332 -201884246 + L1MEc LINE L1 382 696 -5509 207 0 0 0 chr3 25640332 25640355 -201884223 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 641 299 58 53 chr3 25640355 25640656 -201883922 + L1MEc LINE L1 696 994 -5211 275 311 59 0 chr3 25640703 25640822 -201883756 + HAL1 LINE L1 1527 1652 -855 220 220 0 0 chr3 25640991 25641041 -201883537 + (TAA)n Simple_repeat Simple_repeat 1 50 0 27 49 0 0 chr3 25641265 25641306 -201883272 + AT_rich Low_complexity Low_complexity 1 41 0 415 149 11 35 chr3 25641496 25641583 -201882995 + MLT2B3 LTR ERVL 1 85 -469 2364 184 36 21 chr3 25641665 25642138 -201882440 + MLT2B3 LTR ERVL 75 554 0 216 246 87 0 chr3 25642442 25642511 -201882067 - MIR SINE MIR -147 115 41 290 228 206 0 chr3 25642683 25642775 -201881803 - MIR SINE MIR -44 218 108 215 309 15 0 chr3 25642960 25643028 -201881550 + L2 LINE L2 3241 3309 -4 784 261 5 0 chr3 25643378 25643562 -201881016 - MIR SINE MIR -67 195 11 353 304 21 62 chr3 25643681 25643875 -201880703 + MLT1H LTR MaLR 75 260 -289 791 198 8 15 chr3 25645299 25645471 -201879107 + MER5B DNA MER1_type 8 189 0 2452 84 0 0 chr3 25646708 25647017 -201877561 - AluY SINE Alu -2 309 1 242 125 0 0 chr3 25647373 25647413 -201877165 - 5S rRNA rRNA -81 40 1 878 216 0 21 chr3 25649332 25649522 -201875056 - MER5A DNA MER1_type -3 186 1 1074 232 18 0 chr3 25649894 25650114 -201874464 - MER58A DNA MER1_type 0 224 1 465 206 84 19 chr3 25650522 25650629 -201873949 - MER33 DNA MER1_type -210 114 1 733 163 121 25 chr3 25651692 25651932 -201872646 - MER33 DNA MER1_type -34 290 28 383 248 77 0 chr3 25653023 25653140 -201871438 + L3 LINE CR1 1303 1428 -149 266 231 55 0 chr3 25653386 25653477 -201871101 + MLT1E2 LTR MaLR 521 616 -10 329 172 0 0 chr3 25653564 25653622 -201870956 + HAL1 LINE L1 972 1029 -1478 1063 194 74 0 chr3 25653638 25653854 -201870724 - MIR SINE MIR -5 257 26 2692 263 111 26 chr3 25653863 25655161 -201869417 + HAL1 LINE L1 1064 2471 -36 1842 162 3 40 chr3 25655520 25655866 -201868712 + MLT1A1 LTR MaLR 1 333 -32 469 251 184 0 chr3 25655880 25656043 -201868535 - L2 LINE L2 -1113 2201 2009 266 59 0 0 chr3 25656263 25656297 -201868281 + MLT1A1 LTR MaLR 332 365 0 320 277 129 0 chr3 25656400 25656501 -201868077 - L2 LINE L2 -22 3250 3137 1203 250 39 10 chr3 25656506 25656814 -201867764 - L2 LINE L2 -780 2534 2218 415 286 156 5 chr3 25657246 25657445 -201867133 - L2 LINE L2 -1075 2239 2011 414 254 67 34 chr3 25657697 25657906 -201866672 - L1ME4a LINE L1 -217 5904 5689 24 0 0 0 chr3 25658295 25658319 -201866259 + AT_rich Low_complexity Low_complexity 1 24 0 1126 274 30 28 chr3 25659214 25659641 -201864937 - LTR16A LTR ERVL -6 444 17 1970 150 37 6 chr3 25659781 25660108 -201864470 - MER1B DNA MER1_type 0 337 1 409 234 88 29 chr3 25660612 25660749 -201863829 + LTR16C LTR ERVL 344 488 -3 436 73 64 18 chr3 25660960 25661069 -201863509 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 922 276 155 35 chr3 25661343 25661879 -201862699 + L2 LINE L2 2725 3313 0 1298 147 53 9 chr3 25664355 25664580 -201859998 - MER46A DNA MER2_type -1 235 1 342 0 0 0 chr3 25664904 25664942 -201859636 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chr3 25664941 25664967 -201859611 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 2177 112 0 23 chr3 25664967 25665270 -201859308 - AluSx SINE Alu -16 296 1 323 289 88 90 chr3 25665532 25665875 -201858703 - MLT1I LTR MaLR 0 409 68 2276 121 30 33 chr3 25665916 25666281 -201858297 + THE1B LTR MaLR 1 364 0 761 130 294 0 chr3 25667074 25667220 -201857358 - MER5A DNA MER1_type 0 189 1 574 188 0 30 chr3 25667228 25667361 -201857217 - Charlie8 DNA MER1_type -2238 179 51 204 67 0 0 chr3 25667435 25667465 -201857113 + (CA)n Simple_repeat Simple_repeat 2 31 0 824 252 95 13 chr3 25669760 25669955 -201854623 + L1MC4a LINE L1 5574 5804 -2004 979 49 0 0 chr3 25669955 25670078 -201854500 + L1PA4 LINE L1 6031 6153 -2 824 252 95 13 chr3 25670078 25670188 -201854390 + L1MC4a LINE L1 5804 5904 -1904 53 49 0 0 chr3 25670188 25670269 -201854309 + AT_rich Low_complexity Low_complexity 1 81 0 388 333 29 18 chr3 25670276 25670447 -201854131 + MER5A DNA MER1_type 11 183 -6 2290 71 0 0 chr3 25670813 25671142 -201853436 - AluSg SINE Alu 0 329 1 236 229 107 49 chr3 25671767 25671889 -201852689 - LTR16C LTR ERVL -2 489 361 2420 86 0 0 chr3 25672394 25672697 -201851881 + AluY SINE Alu 2 304 -7 342 247 0 11 chr3 25672790 25672883 -201851695 - MLT1H LTR MaLR -2 547 456 458 259 85 57 chr3 25672971 25673253 -201851325 - MLT1H LTR MaLR -259 290 1 22 0 0 0 chr3 25673974 25673996 -201850582 + AT_rich Low_complexity Low_complexity 1 22 0 411 337 29 17 chr3 25674192 25674367 -201850211 + MER5A DNA MER1_type 7 183 -6 2405 90 0 3 chr3 25674725 25675036 -201849542 - AluSg SINE Alu 0 310 1 213 286 174 31 chr3 25675162 25675260 -201849318 + MER5B DNA MER1_type 61 172 -6 387 298 42 18 chr3 25676180 25676348 -201848230 - MLT1L LTR MaLR -351 264 93 233 274 142 18 chr3 25676422 25676535 -201848043 + MIR SINE MIR 136 262 0 1520 166 48 48 chr3 25676990 25677285 -201847293 + AluJb SINE Alu 1 295 -17 183 417 38 8 chr3 25677648 25677780 -201846798 + MIR3 SINE MIR 10 145 -63 372 308 17 8 chr3 25677827 25677944 -201846634 + MER5B DNA MER1_type 1 118 -60 512 212 42 48 chr3 25679304 25679469 -201845109 - MER103 DNA DNA -1 165 2 561 239 89 82 chr3 25680766 25681239 -201843339 - MLT1K LTR MaLR 0 476 1 202 237 0 17 chr3 25681480 25681539 -201843039 - L2 LINE L2 -226 3046 2989 389 214 195 88 chr3 25681579 25681887 -201842691 + MLT1J2 LTR MaLR 69 409 -41 1431 175 15 118 chr3 25682008 25682414 -201842164 - MLT1A1 LTR MaLR 0 365 2 503 272 123 53 chr3 25682617 25682860 -201841718 - MLT1H LTR MaLR -195 354 95 402 323 65 58 chr3 25683881 25684293 -201840285 + HAL1 LINE L1 352 766 -1741 1780 191 11 121 chr3 25684318 25684728 -201839850 + MLT1D LTR MaLR 1 334 -171 2418 51 6 22 chr3 25684728 25685040 -201839538 + AluY SINE Alu 5 311 0 1780 191 11 121 chr3 25685040 25685193 -201839385 + MLT1D LTR MaLR 334 502 -3 261 57 0 0 chr3 25685193 25685228 -201839350 + (CA)n Simple_repeat Simple_repeat 2 36 0 660 281 99 72 chr3 25685637 25686193 -201838385 - MLT1L LTR MaLR -6 609 39 242 305 78 31 chr3 25887007 25887135 -201637443 - L2 LINE L2 0 3272 3139 240 306 0 0 chr3 25887983 25888045 -201636533 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 35 0 0 chr3 25890486 25890515 -201634063 + AT_rich Low_complexity Low_complexity 1 29 0 1150 197 178 24 chr3 25891384 25891755 -201632823 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 25892424 25892704 -201631874 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 25892705 25892817 -201631761 + FLAM_A SINE Alu 6 117 -25 326 156 10 15 chr3 25892949 25893031 -201631547 - Alu SINE Alu -2 300 242 2204 94 0 3 chr3 25893105 25893428 -201631150 + AluSg SINE Alu 1 322 0 2351 169 28 102 chr3 25893437 25893607 -201630971 + L1MD3 LINE L1 7421 7602 -393 1008 77 0 7 chr3 25893607 25893750 -201630828 + L1PA4 LINE L1 6012 6153 -2 2351 169 28 102 chr3 25893750 25893799 -201630779 + L1MD3 LINE L1 7602 7653 -342 189 0 0 0 chr3 25893799 25893820 -201630758 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2351 169 28 102 chr3 25893820 25894209 -201630369 + L1MD3 LINE L1 7653 7985 -10 236 193 277 12 chr3 25894430 25894513 -201630065 + L1MEd LINE L1 46 150 -5969 455 345 131 25 chr3 25894563 25895012 -201629566 + L1MEd LINE L1 244 740 -5379 296 299 78 42 chr3 25897348 25897515 -201627063 + MIR SINE MIR 39 211 -51 229 259 12 86 chr3 25897552 25897633 -201626945 + L2 LINE L2 3239 3313 0 21 57 0 0 chr3 25898495 25898530 -201626048 + AT_rich Low_complexity Low_complexity 1 35 0 993 96 0 0 chr3 25898946 25899071 -201625507 - AluSc SINE Alu -19 290 166 22 35 0 0 chr3 25899909 25899938 -201624640 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 25900585 25900608 -201623970 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr3 25904083 25904108 -201620470 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 202 68 68 68 chr3 25906640 25906684 -201617894 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 25906984 25907005 -201617573 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr3 25908936 25908970 -201615608 + AT_rich Low_complexity Low_complexity 1 34 0 204 259 0 35 chr3 25909435 25909493 -201615085 - L2 LINE L2 -2 3311 3256 28 29 0 0 chr3 25910863 25910898 -201613680 + AT_rich Low_complexity Low_complexity 1 35 0 1851 196 8 30 chr3 25918720 25919093 -201605485 + MLT1A1 LTR MaLR 1 365 0 2702 143 7 2 chr3 25921713 25922138 -201602440 - MSTC LTR MaLR 0 428 2 399 335 40 46 chr3 25922866 25923018 -201601560 + L2 LINE L2 3077 3227 -45 709 165 98 37 chr3 25923148 25923312 -201601266 - MER3 DNA MER1_type -81 128 2 521 244 16 8 chr3 25924621 25924744 -201599834 + MER5B DNA MER1_type 53 176 -2 631 194 21 7 chr3 25925771 25925915 -201598663 + L1MB4 LINE L1 6032 6177 -3 22 56 0 0 chr3 25926483 25926519 -201598059 + AT_rich Low_complexity Low_complexity 1 36 0 4539 76 26 9 chr3 25927589 25928697 -201595881 - MER11A LTR ERVK 0 1266 1 739 368 48 25 chr3 25929036 25929430 -201595148 - L2 LINE L2 -1 3271 2869 254 254 8 142 chr3 25929506 25929640 -201594938 - MER102a DNA MER1_type 0 330 215 1761 171 34 3 chr3 25929846 25930174 -201594404 - MER44D DNA MER2_type -1 608 1 496 305 0 8 chr3 25930700 25930828 -201593750 + MIR SINE MIR 30 156 -106 249 288 61 0 chr3 25931524 25931590 -201592988 + MIR SINE MIR 81 150 -58 253 326 11 11 chr3 25931599 25931688 -201592890 - MER5A DNA MER1_type -8 181 93 225 280 0 0 chr3 25931849 25931899 -201592679 - MLT1K LTR MaLR -111 477 428 618 341 39 33 chr3 25931994 25932299 -201592279 - MLT1K LTR MaLR -253 335 29 1821 126 169 21 chr3 25932539 25932912 -201591666 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 25933581 25933861 -201590717 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 25933862 25933974 -201590604 + FLAM_A SINE Alu 6 117 -25 813 100 0 0 chr3 25934203 25934313 -201590265 + AluSg/x SINE Alu 197 306 -4 272 244 13 13 chr3 25934501 25934579 -201589999 - MLT1K LTR MaLR -323 265 188 27 0 0 0 chr3 25934938 25934965 -201589613 + AT_rich Low_complexity Low_complexity 1 27 0 1965 132 94 29 chr3 25935361 25935703 -201588875 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr3 25937000 25937049 -201587529 + AT_rich Low_complexity Low_complexity 1 49 0 349 347 56 20 chr3 25937557 25937753 -201586825 + HAL1b LINE L1 505 707 -641 24 53 0 0 chr3 25938640 25938678 -201585900 + AT_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr3 25938730 25938773 -201585805 + AT_rich Low_complexity Low_complexity 1 43 0 337 278 141 56 chr3 25939231 25939501 -201585077 + L1ME LINE L1 4633 4925 -1221 360 249 112 13 chr3 25940165 25940466 -201584112 + L1MCc LINE L1 1281 1848 -5068 332 325 57 28 chr3 25940513 25940725 -201583853 + L1ME LINE L1 5508 5725 -396 791 252 59 14 chr3 25940727 25940949 -201583629 - MIR SINE MIR -28 234 3 533 213 126 44 chr3 25941230 25941413 -201583165 + MIR SINE MIR 3 200 -62 267 286 98 11 chr3 25942976 25943162 -201581416 + MIR SINE MIR 55 255 -7 191 382 114 30 chr3 25943309 25943571 -201581007 - L2 LINE L2 -20 3252 2969 1259 169 40 9 chr3 25943595 25943820 -201580758 - MER8 DNA MER2_type 0 239 8 184 340 0 0 chr3 25943887 25943940 -201580638 + MIR SINE MIR 89 141 -67 605 204 178 6 chr3 25944312 25944469 -201580109 + MER5A DNA MER1_type 3 186 -3 351 277 129 0 chr3 25945196 25945297 -201579281 + MER81 DNA DNA 1 114 0 650 211 177 0 chr3 25945379 25945526 -201579052 + MER5A DNA MER1_type 7 179 -10 2268 98 20 0 chr3 25945917 25946223 -201578355 + AluSp SINE Alu 2 313 0 917 168 37 42 chr3 25946502 25946692 -201577886 - MER5A DNA MER1_type 0 189 1 457 239 68 8 chr3 25946933 25947050 -201577528 - MER5C DNA MER1_type -200 124 1 1829 157 83 52 chr3 25947575 25947996 -201576582 - MER63B DNA MER1_type 0 436 3 969 264 84 6 chr3 25948272 25948696 -201575882 + L1MC3 LINE L1 6233 6359 0 385 245 180 7 chr3 25949147 25949286 -201575292 - MER5A DNA MER1_type 0 189 27 21 82 0 0 chr3 25950699 25950748 -201573830 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 25950978 25951007 -201573571 + AT_rich Low_complexity Low_complexity 1 29 0 241 290 83 21 chr3 25951761 25951906 -201572672 + L1ME LINE L1 5766 5919 -202 197 355 48 83 chr3 25952497 25952810 -201571768 - L2 LINE L2 -13 3259 2958 218 296 95 35 chr3 25953021 25953190 -201571388 + L2 LINE L2 2007 2185 -1129 3280 209 58 71 chr3 25953235 25953676 -201570902 + L1MC4a LINE L1 6730 7176 -632 2153 101 0 3 chr3 25953676 25953963 -201570615 + AluSg SINE Alu 1 286 -24 3280 209 58 71 chr3 25953963 25954178 -201570400 + L1MC4a LINE L1 7176 7392 -416 1008 77 0 7 chr3 25954178 25954321 -201570257 + L1PA4 LINE L1 6012 6153 -2 3280 209 58 71 chr3 25954321 25954370 -201570208 + L1MC4a LINE L1 7392 7440 -368 189 0 0 0 chr3 25954370 25954391 -201570187 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3280 209 58 71 chr3 25954391 25954777 -201569801 + L1MC4a LINE L1 7440 7808 0 241 193 277 12 chr3 25955001 25955084 -201569494 + L1MEd LINE L1 46 150 -5969 1062 306 123 22 chr3 25955134 25955978 -201568600 + L1MEd LINE L1 244 1172 -4947 347 300 0 0 chr3 25956054 25956144 -201568434 - L1MC4 LINE L1 -1339 6703 6614 312 219 73 0 chr3 25956149 25956231 -201568347 - L1MC4 LINE L1 -1340 6702 6615 * 316 259 47 0 chr3 25956203 25956288 -201568290 - L1MC4 LINE L1 -1340 6702 6614 370 223 0 43 chr3 25956308 25956402 -201568176 - L1MC4 LINE L1 -1339 6703 6614 1427 109 45 5 chr3 25957075 25957295 -201567283 - MER30 DNA MER1_type 0 230 2 1278 216 41 44 chr3 25957304 25957646 -201566932 + MER58B DNA MER1_type 1 341 0 24 0 0 0 chr3 25959096 25959120 -201565458 + AT_rich Low_complexity Low_complexity 1 24 0 603 306 19 19 chr3 25959417 25959682 -201564896 + L1ME4a LINE L1 5491 5755 -366 252 244 244 10 chr3 25959690 25959883 -201564695 + L1ME4a LINE L1 5803 6040 -81 363 44 0 0 chr3 25960009 25960054 -201564524 + (CA)n Simple_repeat Simple_repeat 2 46 0 256 270 40 30 chr3 25960072 25960172 -201564406 - L1MC4 LINE L1 -1927 5881 5781 363 298 263 29 chr3 25960277 25960733 -201563845 + L2 LINE L2 966 1528 -1786 352 307 12 102 chr3 25960733 25961143 -201563435 - L1M4 LINE L1 -2392 3754 3382 810 232 40 13 chr3 25961914 25961960 -201562618 - Charlie4 DNA MER1_type -1718 243 200 2320 147 0 3 chr3 25961960 25962327 -201562251 + MER47A DNA MER2_type 1 366 0 810 232 40 13 chr3 25962327 25962504 -201562074 - Charlie4 DNA MER1_type -1761 200 14 454 313 27 46 chr3 25962703 25962747 -201561831 - HAL1 LINE L1 -741 1766 1723 291 54 0 0 chr3 25962747 25962784 -201561794 + (TA)n Simple_repeat Simple_repeat 2 38 0 454 313 27 46 chr3 25962784 25963110 -201561468 - HAL1 LINE L1 -784 1723 1403 421 302 64 53 chr3 25963124 25963389 -201561189 - L1MEd LINE L1 -4864 1255 988 1115 191 0 43 chr3 25963913 25964143 -201560435 - AluJo SINE Alu -92 220 1 22 0 0 0 chr3 25964162 25964184 -201560394 + AT_rich Low_complexity Low_complexity 1 22 0 486 311 12 81 chr3 25965504 25965826 -201558752 - L2 LINE L2 -19 3294 2995 474 65 0 0 chr3 25966095 25966157 -201558421 + (TA)n Simple_repeat Simple_repeat 1 62 0 287 309 44 22 chr3 25967639 25967775 -201556803 - L2 LINE L2 -219 3053 2915 463 316 35 12 chr3 25968450 25968621 -201555957 + MER5A DNA MER1_type 15 189 0 1686 275 104 34 chr3 25969474 25969929 -201554649 - MLT2E LTR ERVL -4 624 120 2054 100 35 7 chr3 25969929 25970218 -201554360 - AluSx SINE Alu -15 297 1 1686 275 104 34 chr3 25970218 25970329 -201554249 - MLT2E LTR ERVL -508 120 18 905 258 84 70 chr3 25970718 25971201 -201553377 - MLT1H LTR MaLR -15 534 5 878 203 55 51 chr3 25971321 25971538 -201553040 + MER20 DNA MER1_type 2 219 0 338 246 127 52 chr3 25973759 25973893 -201550685 + MIR SINE MIR 119 262 0 219 88 0 0 chr3 25976691 25976725 -201547853 + (CA)n Simple_repeat Simple_repeat 1 34 0 438 229 95 78 chr3 25978093 25978440 -201546138 - L1M LINE L1 -751 5413 5042 2339 222 54 2 chr3 25978451 25979009 -201545569 + L1ME2 LINE L1 5395 5981 -183 1876 184 14 23 chr3 25979009 25979357 -201545221 + MLT1A1 LTR MaLR 3 347 -18 491 291 24 0 chr3 25979379 25979544 -201545034 + L1ME2 LINE L1 5994 6162 -2 338 308 174 5 chr3 25979590 25979785 -201544793 + MIR SINE MIR 3 230 -32 313 261 73 37 chr3 25980059 25980255 -201544323 + MER63 DNA MER1_type 5 1687 -1 347 258 108 97 chr3 25980888 25981105 -201543473 + L1ME4a LINE L1 5628 5841 -280 2057 115 0 0 chr3 25981105 25981391 -201543187 - AluY SINE Alu -25 286 1 347 258 108 97 chr3 25981391 25981627 -201542951 + L1ME4a LINE L1 5841 6086 -35 447 266 24 48 chr3 25981999 25982206 -201542372 - L1MC4 LINE L1 -1 8041 7840 2114 240 59 38 chr3 25982266 25982957 -201541621 - L1ME2 LINE L1 -12 6152 5447 248 263 0 0 chr3 25983454 25983511 -201541067 + L2 LINE L2 3255 3311 -2 784 227 129 5 chr3 25983514 25983708 -201540870 + MIR SINE MIR 13 230 -32 2856 264 94 30 chr3 25986419 25986599 -201537979 - L2 LINE L2 -2 3311 3144 1796 168 0 0 chr3 25986599 25986890 -201537688 + AluSx SINE Alu 12 302 -10 2856 264 94 30 chr3 25986890 25987883 -201536695 - L2 LINE L2 -169 3144 2032 2193 112 0 3 chr3 25987883 25988187 -201536391 + AluSg SINE Alu 1 303 -7 2856 264 94 30 chr3 25988187 25988385 -201536193 - L2 LINE L2 -1281 2032 1848 436 254 131 89 chr3 25990174 25990532 -201534046 - LTR16A1 LTR ERVL 0 457 85 287 318 154 37 chr3 25990628 25990842 -201533736 - MIR SINE MIR -10 252 14 561 280 54 64 chr3 25990908 25991222 -201533356 + L3b LINE CR1 1103 1413 -170 313 36 36 36 chr3 25991244 25991299 -201533279 + (GAAAA)n Simple_repeat Simple_repeat 3 57 0 345 207 0 0 chr3 25991812 25991894 -201532684 + (TA)n Simple_repeat Simple_repeat 1 82 0 581 313 45 40 chr3 25992418 25992607 -201531971 - MIR SINE MIR -9 253 61 1568 207 102 8 chr3 25992607 25992969 -201531609 + MSTD LTR MaLR 1 396 0 581 313 45 40 chr3 25992969 25993003 -201531575 - MIR SINE MIR -201 61 29 350 275 79 119 chr3 25993135 25993640 -201530938 + MLT1K LTR MaLR 104 588 0 33529 39 31 2 chr3 25994162 25998326 -201526252 + L1P LINE L1 1 4286 -1860 10167 85 8 21 chr3 25998326 25999725 -201524853 + HERVL-A1 LTR ERVL 4274 5654 0 2999 80 52 5 chr3 25999725 26000149 -201524429 + MLT2A1 LTR ERVL 1 444 0 7159 220 60 28 chr3 26000149 26001313 -201523265 - L1ME LINE L1 -445 5790 4665 1854 167 20 3 chr3 26001313 26001667 -201522911 + MER46B DNA MER2_type 2 236 0 7159 220 60 28 chr3 26001667 26002945 -201521633 - L1ME LINE L1 -1570 4665 3278 5011 251 67 11 chr3 26002963 26004518 -201520060 - L1ME LINE L1 -4718 1678 37 404 235 0 0 chr3 26006664 26006745 -201517833 - MIR3 SINE MIR -46 162 82 1143 256 83 42 chr3 26007477 26007949 -201516629 - LTR16C LTR ERVL 0 491 1 594 269 120 42 chr3 26007973 26008307 -201516271 - MLT1I LTR MaLR -11 398 39 524 342 74 25 chr3 26008702 26008963 -201515615 + L1MC4a LINE L1 5413 5660 -2148 2542 133 24 7 chr3 26008963 26009383 -201515195 + MSTA LTR MaLR 1 427 -1 524 342 74 25 chr3 26009383 26009609 -201514969 + L1MC4a LINE L1 5660 5924 -1884 299 239 114 94 chr3 26009821 26010022 -201514556 + MLT1K LTR MaLR 136 340 -248 255 61 0 0 chr3 26010123 26010156 -201514422 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 330 314 127 31 chr3 26010322 26010551 -201514027 + L1MC4a LINE L1 5751 6001 -1807 622 300 67 73 chr3 26010986 26011343 -201513235 - MLT1I LTR MaLR -1 408 54 21 0 0 0 chr3 26011746 26011767 -201512811 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 26011878 26011901 -201512677 + AT_rich Low_complexity Low_complexity 1 23 0 756 102 0 183 chr3 26012204 26012401 -201512177 - MER82 DNA MER2_type -304 349 189 26 30 0 0 chr3 26012459 26012492 -201512086 + AT_rich Low_complexity Low_complexity 1 33 0 307 227 13 60 chr3 26012553 26012703 -201511875 + L1ME4a LINE L1 5976 6118 -3 2178 97 4 0 chr3 26013082 26013431 -201511147 + AluSg SINE Alu 3 352 0 822 113 0 0 chr3 26013441 26013547 -201511031 + AluSg/x SINE Alu 187 292 -20 269 26 26 0 chr3 26014092 26014130 -201510448 + (CA)n Simple_repeat Simple_repeat 2 40 0 2942 161 40 72 chr3 26014134 26014786 -201509792 - MER82 DNA MER2_type 0 653 23 24 67 0 0 chr3 26014789 26014834 -201509744 + AT_rich Low_complexity Low_complexity 1 45 0 2488 79 0 0 chr3 26015045 26015348 -201509230 + AluY SINE Alu 1 303 -8 1852 149 3 0 chr3 26015424 26015706 -201508872 - AluSx SINE Alu -7 305 23 836 252 5 5 chr3 26016470 26016676 -201507902 + L1ME1 LINE L1 5457 5662 -504 1155 246 30 18 chr3 26018813 26019143 -201505435 + L1ME1 LINE L1 5674 6007 -159 234 65 0 0 chr3 26019161 26019192 -201505386 + MER3 DNA MER1_type 19 49 -160 375 245 13 0 chr3 26019197 26019307 -201505271 + L1ME1 LINE L1 6064 6183 -1 322 217 120 22 chr3 26019632 26019724 -201504854 + L2 LINE L2 3208 3308 -5 1023 276 110 18 chr3 26019998 26020566 -201504012 - L2 LINE L2 -4 3309 2687 345 140 0 0 chr3 26020566 26020616 -201503962 + Alu SINE Alu 1 50 -250 428 233 0 0 chr3 26020616 26020702 -201503876 - AluJ/FLAM SINE Alu -226 86 1 213 344 110 40 chr3 26020785 26021012 -201503566 - L2 LINE L2 -1063 2251 2009 * 870 313 69 30 chr3 26020991 26021490 -201503088 + L2 LINE L2 2791 3306 -7 21 0 0 0 chr3 26022700 26022721 -201501857 + AT_rich Low_complexity Low_complexity 1 21 0 240 306 0 0 chr3 26023463 26023525 -201501053 + (CA)n Simple_repeat Simple_repeat 1 62 0 250 320 70 23 chr3 26024374 26024502 -201500076 + L2 LINE L2 3139 3272 0 507 340 46 46 chr3 26024894 26025153 -201499425 - MLT1K LTR MaLR -325 263 5 488 311 37 37 chr3 26025493 26025657 -201498921 - MER5B DNA MER1_type -14 164 1 1422 208 5 5 chr3 26027161 26027643 -201496935 - L1ME LINE L1 -627 5537 5056 1844 191 41 109 chr3 26027656 26027794 -201496784 + L1ME2 LINE L1 5554 5700 -464 1171 130 19 24 chr3 26027794 26028001 -201496577 + L1PB1 LINE L1 5943 6148 -3 1844 191 41 109 chr3 26028001 26028495 -201496083 + L1ME2 LINE L1 5700 6143 -21 34 84 0 0 chr3 26028637 26028720 -201495858 + AT_rich Low_complexity Low_complexity 1 83 0 318 244 75 85 chr3 26028785 26029092 -201495486 - L1ME4a LINE L1 -206 5915 5612 243 0 0 0 chr3 26029591 26029618 -201494960 + (T)n Simple_repeat Simple_repeat 1 27 0 527 283 69 6 chr3 26029920 26030093 -201494485 + MIR SINE MIR 64 247 -15 724 352 157 33 chr3 26030175 26030625 -201493953 + L2 LINE L2 210 603 -2711 2184 112 0 0 chr3 26030625 26030911 -201493667 - AluSx SINE Alu -26 286 1 724 352 157 33 chr3 26030911 26032027 -201492551 + L2 LINE L2 603 1970 -1344 30 59 0 0 chr3 26032790 26032841 -201491737 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr3 26034897 26034924 -201489654 + (TG)n Simple_repeat Simple_repeat 2 28 0 246 342 46 66 chr3 26035625 26035777 -201488801 - L3b LINE CR1 -38 1545 1397 237 289 79 44 chr3 26035799 26035913 -201488665 + MIR SINE MIR 71 188 -74 507 314 14 45 chr3 26037193 26037413 -201487165 - MIR SINE MIR -14 248 36 268 43 21 21 chr3 26038041 26038088 -201486490 + (CA)n Simple_repeat Simple_repeat 1 47 0 210 37 0 0 chr3 26039231 26039258 -201485320 + (GA)n Simple_repeat Simple_repeat 2 28 0 304 339 83 39 chr3 26039650 26039830 -201484748 + MER5A DNA MER1_type 2 189 0 251 284 140 26 chr3 26042077 26042306 -201482272 + L1ME LINE L1 5563 5817 -304 751 271 60 5 chr3 26042920 26043138 -201481440 + MIR SINE MIR 33 262 0 189 390 50 25 chr3 26045087 26045246 -201479332 + L3b LINE CR1 1420 1582 -1 943 189 9 47 chr3 26046555 26046767 -201477811 - MER3 DNA MER1_type -1 208 5 238 333 126 49 chr3 26047178 26047526 -201477052 + L2 LINE L2 2328 2702 -612 1260 228 96 3 chr3 26047814 26048126 -201476452 + MER58B DNA MER1_type 1 341 0 284 310 7 71 chr3 26048230 26048385 -201476193 + L2 LINE L2 3160 3304 -9 240 287 0 32 chr3 26048455 26048549 -201476029 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 246 128 0 0 chr3 26049651 26049690 -201474888 + (A)n Simple_repeat Simple_repeat 1 39 0 273 264 63 25 chr3 26049949 26050108 -201474470 - L1ME LINE L1 -614 5507 5343 596 312 74 28 chr3 26050120 26050335 -201474243 + MIR SINE MIR 23 247 -15 2423 15 0 0 chr3 26052859 26053131 -201471447 - L1P1 LINE L1 -505 5650 5379 405 49 98 0 chr3 26053131 26053185 -201471393 + L1PA4 LINE L1 6088 6154 -1 1102 281 71 20 chr3 26053446 26053895 -201470683 - MLT1L LTR MaLR -4 611 140 478 266 70 0 chr3 26054109 26054237 -201470341 + L2 LINE L2 3177 3313 0 1581 195 26 35 chr3 26055009 26055352 -201469226 + MLT1A1 LTR MaLR 26 365 0 1257 247 76 8 chr3 26055663 26056044 -201468534 + LTR16C LTR ERVL 85 491 0 420 82 0 0 chr3 26056215 26056276 -201468302 + (CA)n Simple_repeat Simple_repeat 2 62 0 1134 286 58 39 chr3 26058199 26058786 -201465792 + L1MCc LINE L1 816 1413 -5010 * 6585 220 118 69 chr3 26058783 26059226 -201465352 + L1MD3 LINE L1 4763 5183 -2812 3159 104 11 7 chr3 26059226 26059676 -201464902 + MLT2A2 LTR ERVL 1 452 -1 6585 220 118 69 chr3 26059676 26059918 -201464660 + L1MD3 LINE L1 5183 5412 -2583 204 40 0 0 chr3 26059918 26059943 -201464635 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6585 220 118 69 chr3 26059943 26061618 -201462960 + L1MD3 LINE L1 5412 7003 -992 512 259 12 8 chr3 26061618 26061746 -201462832 + MLT1F1 LTR MaLR 1 129 -445 6585 220 118 69 chr3 26061746 26062131 -201462447 + L1MD3 LINE L1 7003 7368 -627 2477 121 22 0 chr3 26062131 26062487 -201462091 - THE1B LTR MaLR 0 364 1 6585 220 118 69 chr3 26062487 26062688 -201461890 + L1MD3 LINE L1 7368 7995 0 538 310 73 39 chr3 26062875 26063107 -201461471 - MIR SINE MIR 0 262 23 248 335 138 5 chr3 26063107 26063310 -201461268 - MIR SINE MIR 0 262 29 491 305 60 92 chr3 26064312 26064561 -201460017 - L2 LINE L2 0 3272 3032 738 213 113 0 chr3 26065329 26065489 -201459089 + MER45A DNA AcHobo 1 178 0 1521 195 128 19 chr3 26065727 26066148 -201458430 - MLT1C LTR MaLR 0 467 1 363 367 14 7 chr3 26066426 26066565 -201458013 - MIR3 SINE MIR -23 185 46 495 272 16 86 chr3 26066719 26066962 -201457616 - MER102b DNA MER1_type -16 325 100 309 305 83 31 chr3 26068335 26068503 -201456075 + MIR SINE MIR 15 191 -61 233 162 0 0 chr3 26069512 26069549 -201455029 + L2 LINE L2 3255 3291 -22 47 19 0 0 chr3 26070076 26070130 -201454448 + AT_rich Low_complexity Low_complexity 1 54 0 196 269 19 0 chr3 26071287 26071339 -201453239 - L2 LINE L2 0 3313 3261 981 119 0 0 chr3 26073300 26073451 -201451127 + (TA)n Simple_repeat Simple_repeat 2 152 0 1839 135 25 14 chr3 26073451 26073732 -201450846 - AluJo SINE Alu -28 284 1 1218 299 31 43 chr3 26075433 26076015 -201448563 - L1MC3 LINE L1 -1263 6522 5948 1530 207 31 0 chr3 26076427 26076751 -201447827 + L1 LINE L1 4910 5243 -903 387 208 35 34 chr3 26076961 26077320 -201447258 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 280 232 96 0 chr3 26077330 26077455 -201447123 + (TATAG)n Simple_repeat Simple_repeat 2 138 0 415 146 20 26 chr3 26077462 26077613 -201446965 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 1911 149 48 25 chr3 26077808 26078164 -201446414 - THE1B LTR MaLR 0 364 1 10952 106 25 0 chr3 26078164 26079706 -201444872 - THE1B-int LTR MaLR 0 1580 1 1893 128 110 27 chr3 26079706 26080042 -201444536 - THE1B LTR MaLR 0 364 1 1945 132 31 0 chr3 26082555 26082679 -201441899 + AluSx SINE Alu 1 120 -192 192 40 0 0 chr3 26082679 26082704 -201441874 + (TA)n Simple_repeat Simple_repeat 1 25 0 1945 132 31 0 chr3 26082704 26082867 -201441711 + AluSx SINE Alu 120 297 -15 193 286 0 0 chr3 26083261 26083310 -201441268 + L2 LINE L2 3265 3313 0 452 256 0 62 chr3 26084181 26084310 -201440268 + FLAM_A SINE Alu 3 123 -10 23 78 0 0 chr3 26084667 26084718 -201439860 + AT_rich Low_complexity Low_complexity 1 51 0 1011 184 190 53 chr3 26085226 26085547 -201439031 - MLT1A1 LTR MaLR 0 365 1 246 291 39 29 chr3 26086424 26086527 -201438051 - MIR SINE MIR -60 148 45 354 294 21 21 chr3 26086978 26087121 -201437457 + MARNA DNA Mariner 88 230 -356 589 197 24 31 chr3 26087167 26087294 -201437284 - LTR67 LTR ERVL 0 557 432 231 271 86 48 chr3 26087690 26087856 -201436722 + MLT1J1 LTR MaLR 34 249 -262 230 294 166 43 chr3 26087859 26088022 -201436556 + MLT1J2 LTR MaLR 254 436 -14 766 271 95 21 chr3 26089823 26090180 -201434398 - MLT1H LTR MaLR -153 402 43 2114 130 0 0 chr3 26090325 26090626 -201433952 - AluSx SINE Alu -11 301 1 308 304 0 0 chr3 26090698 26090777 -201433801 + L2 LINE L2 3192 3270 -2 543 245 155 0 chr3 26091026 26091181 -201433397 + MER5A DNA MER1_type 9 187 -2 25 51 0 0 chr3 26091822 26091861 -201432717 + AT_rich Low_complexity Low_complexity 1 39 0 693 186 137 0 chr3 26092389 26092550 -201432028 - MER5A DNA MER1_type 0 189 7 7308 168 18 10 chr3 26092590 26095041 -201429537 + L1PB1 LINE L1 3688 6151 0 428 344 87 5 chr3 26095151 26095346 -201429232 + MIR SINE MIR 52 262 0 278 300 0 29 chr3 26095488 26095558 -201429020 - L2 LINE L2 0 3272 3205 1653 237 47 81 chr3 26095588 26095984 -201428594 - MLT1F LTR MaLR -8 534 161 2300 93 3 3 chr3 26095984 26096284 -201428294 + AluSx SINE Alu 1 300 -12 1653 237 47 81 chr3 26096284 26096440 -201428138 - MLT1F LTR MaLR -381 161 1 508 217 83 0 chr3 26096928 26097048 -201427530 - MER94 DNA DNA 0 134 5 180 0 0 0 chr3 26097625 26097645 -201426933 + (A)n Simple_repeat Simple_repeat 1 20 0 1905 172 20 24 chr3 26098868 26099359 -201425219 - L1M4 LINE L1 -526 5658 5171 238 315 97 24 chr3 26099539 26099704 -201424874 - MIR SINE MIR -38 224 48 22 35 0 0 chr3 26100092 26100121 -201424457 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr3 26100134 26100177 -201424401 + AT_rich Low_complexity Low_complexity 1 43 0 184 390 0 0 chr3 26100955 26101050 -201423528 + MIR SINE MIR 37 131 -77 * 347 298 107 16 chr3 26100981 26101157 -201423421 + L2 LINE L2 3083 3308 -5 1406 179 75 48 chr3 26102348 26102683 -201421895 + MER2 DNA MER2_type 1 344 0 302 216 57 45 chr3 26102950 26103038 -201421540 - MLT1J1 LTR MaLR -13 433 345 1815 268 105 27 chr3 26103095 26103178 -201421400 + L1ME3A LINE L1 4961 5036 -1134 748 218 93 10 chr3 26103178 26103371 -201421207 + MER3 DNA MER1_type 1 209 0 1815 268 105 27 chr3 26103371 26103759 -201420819 + L1ME3A LINE L1 5036 5392 -778 198 0 0 0 chr3 26103759 26103781 -201420797 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1815 268 105 27 chr3 26103781 26104424 -201420154 + L1ME3A LINE L1 5392 6161 -9 252 212 15 61 chr3 26104667 26104733 -201419845 - L2 LINE L2 0 3313 3251 213 247 93 31 chr3 26105167 26105264 -201419314 + L2 LINE L2 3150 3252 -20 329 274 101 94 chr3 26106696 26107003 -201417575 - MLT1J LTR MaLR -101 410 102 239 312 0 13 chr3 26107059 26107136 -201417442 - MLT1L LTR MaLR -538 77 2 4288 185 32 15 chr3 26107683 26108697 -201415881 + L1MB3 LINE L1 5149 6181 -2 4830 90 1 10 chr3 26210978 26211680 -201312898 - L1P LINE L1 -893 5253 4558 3641 78 4 0 chr3 26211680 26212160 -201312418 + L1PA7 LINE L1 5655 6143 -11 446 271 49 0 chr3 26213547 26213691 -201310887 - MIR SINE MIR 0 262 112 184 42 0 0 chr3 26213851 26213875 -201310703 + MIR SINE MIR 116 139 -123 328 227 0 0 chr3 26214138 26214213 -201310365 + MER116 DNA Mariner 1 75 -5 441 0 0 0 chr3 26215807 26215856 -201308722 + (CA)n Simple_repeat Simple_repeat 2 50 0 1101 234 78 57 chr3 26216771 26217104 -201307474 - LTR16C LTR ERVL 0 491 152 919 343 52 41 chr3 26217409 26218123 -201306455 - HERV16 LTR ERVL -441 5323 4602 635 342 29 26 chr3 26218188 26218498 -201306080 - HERV16 LTR ERVL -1225 4429 4119 376 312 28 57 chr3 26218636 26218918 -201305660 - HERV16 LTR ERVL -1698 3956 3683 777 209 48 147 chr3 26218969 26219385 -201305193 + MLT2D LTR ERVL 90 464 0 957 324 40 53 chr3 26219430 26220136 -201304442 - HERV16 LTR ERVL -2850 2146 1492 1106 184 10 0 chr3 26220546 26220753 -201303825 - MER3 DNA MER1_type 0 209 1 266 349 30 48 chr3 26220842 26221008 -201303570 - MIR SINE MIR -72 190 28 1832 240 42 38 chr3 26221197 26221999 -201302579 + L1MEc LINE L1 1200 2148 -4415 421 305 41 50 chr3 26221992 26222428 -201302150 + L1M4 LINE L1 1731 2162 -4234 * 458 112 90 34 chr3 26222417 26222506 -201302072 + L1M4 LINE L1 2383 2476 -3739 * 1080 259 37 0 chr3 26222499 26222882 -201301696 + L1M4 LINE L1 2867 3263 -2952 * 13773 186 36 22 chr3 26222877 26227126 -201297452 + L1MA3 LINE L1 12 4201 -3523 1646 179 0 74 chr3 26227126 26227271 -201297307 + AluJo SINE Alu 1 155 -157 2228 62 14 3 chr3 26227271 26227560 -201297018 + AluY SINE Alu 1 292 -19 1646 179 0 74 chr3 26227560 26227750 -201296828 + AluJo SINE Alu 155 311 -1 13773 186 36 22 chr3 26227750 26229299 -201295279 + L1MA3 LINE L1 4201 5727 -1997 2726 7 0 0 chr3 26229299 26229592 -201294986 - AluYa5 SINE Alu -13 298 6 13773 186 36 22 chr3 26229592 26231041 -201293537 + L1MA3 LINE L1 5727 7724 0 24 0 0 0 chr3 26231048 26231072 -201293506 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 26231252 26231297 -201293281 + AT_rich Low_complexity Low_complexity 1 45 0 16365 94 18 3 chr3 26231504 26234141 -201290437 - L1P3 LINE L1 -534 5620 2946 2993 225 54 14 chr3 26234147 26234568 -201290010 + L1M4 LINE L1 4426 4829 -1386 252 59 0 0 chr3 26234568 26234602 -201289976 + (TG)n Simple_repeat Simple_repeat 1 34 0 2993 225 54 14 chr3 26234602 26235039 -201289539 + L1M4 LINE L1 4829 5318 -897 265 143 95 16 chr3 26235042 26235105 -201289473 + L1M4 LINE L1 5504 5571 -662 751 222 26 32 chr3 26235704 26235893 -201288685 - MER5A DNA MER1_type 0 189 2 2151 119 0 3 chr3 26236378 26236671 -201287907 - AluSc SINE Alu -17 292 1 235 0 0 0 chr3 26236920 26236947 -201287631 - MLT2A1 LTR ERVL 0 444 418 * 2058 85 42 16 chr3 26236945 26237252 -201287326 - MLT2A1 LTR ERVL -129 315 1 331 411 15 0 chr3 26237263 26237460 -201287118 - MER93a-int LTR ERV1 -1085 6452 6253 2550 234 66 52 chr3 26237939 26238967 -201285611 - MER93a-int LTR ERV1 -1480 3456 2866 1606 138 14 3 chr3 26238967 26239250 -201285328 + L1MA1 LINE L1 6017 6302 0 2550 234 66 52 chr3 26239250 26239654 -201284924 - MER93a-int LTR ERV1 -2070 2866 2469 2221 83 0 23 chr3 26239738 26240038 -201284540 + AluY SINE Alu 1 293 -18 446 229 54 75 chr3 26240054 26240409 -201284169 - MER93a-int LTR ERV1 -2549 2387 2106 1264 182 71 43 chr3 26240417 26240697 -201283881 + Tigger2a DNA MER2_type 5 292 -142 2357 50 4 0 chr3 26240803 26241122 -201283456 + AluY SINE Alu 1 320 0 685 214 21 28 chr3 26241124 26241269 -201283309 + Tigger2a DNA MER2_type 301 444 0 385 247 147 0 chr3 26241283 26241433 -201283145 - MER93a-int LTR ERV1 -2855 2081 1910 367 186 116 0 chr3 26241527 26241613 -201282965 - MER34 LTR ERV1 -446 96 1 1364 200 76 56 chr3 26241806 26242475 -201282103 - MER93a-int LTR ERV1 -2846 3017 882 278 288 61 0 chr3 26242798 26242864 -201281714 - MER93a-int LTR ERV1 -7238 299 230 788 257 133 22 chr3 26243059 26243421 -201281157 - MER93a LTR ERV1 0 402 1 248 172 0 35 chr3 26244495 26244553 -201280025 - MLT2C1 LTR ERVL 0 520 465 228 163 0 0 chr3 26244610 26244653 -201279925 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 98 0 0 chr3 26244656 26244697 -201279881 + (GA)n Simple_repeat Simple_repeat 2 42 0 1466 167 22 51 chr3 26244720 26245031 -201279547 - MLT2C1 LTR ERVL -95 302 1 2194 252 68 19 chr3 26246865 26247130 -201277448 + MLT1E1 LTR MaLR 1 252 -402 2535 76 51 0 chr3 26247130 26247486 -201277092 + L1PA7 LINE L1 5770 6143 -11 2194 252 68 19 chr3 26247486 26247839 -201276739 + MLT1E1 LTR MaLR 252 649 -5 342 0 0 0 chr3 26248550 26248588 -201275990 + (TG)n Simple_repeat Simple_repeat 2 39 0 266 357 9 27 chr3 26249517 26249629 -201274949 + L2 LINE L2 3197 3306 -7 1319 241 72 38 chr3 26249808 26250381 -201274197 + L1M4 LINE L1 881 1472 -5070 25 51 0 0 chr3 26250632 26250671 -201273907 + AT_rich Low_complexity Low_complexity 1 39 0 1006 308 23 34 chr3 26252624 26253010 -201271568 - LTR16A LTR ERVL -13 437 56 398 360 31 22 chr3 26253673 26253898 -201270680 - LTR16C LTR ERVL -102 389 163 696 293 15 10 chr3 26255117 26255322 -201269256 - MIR SINE MIR -55 207 2 191 229 48 96 chr3 26257155 26257238 -201267340 - L2 LINE L2 -5 3267 3189 479 133 4 0 chr3 26257492 26257573 -201267005 + MSTB1 LTR MaLR 257 409 -23 329 250 53 0 chr3 26258319 26258395 -201266183 + AluSg SINE Alu 3 82 -218 1194 173 119 34 chr3 26258519 26258814 -201265764 + THE1C LTR MaLR 56 375 0 6522 144 14 46 chr3 26258816 26259980 -201264598 + THE1C-int LTR MaLR 3 1128 -452 1098 287 117 29 chr3 26260079 26260525 -201264053 - MLT1G1 LTR MaLR -110 485 1 22 70 0 0 chr3 26260819 26260862 -201263716 + AT_rich Low_complexity Low_complexity 1 43 0 3104 193 39 29 chr3 26261065 26262450 -201262128 + L1MC1 LINE L1 4432 5830 -514 1331 161 22 0 chr3 26262450 26262674 -201261904 + MSTB LTR MaLR 1 229 -197 1679 189 151 17 chr3 26262696 26263068 -201261510 + MSTB LTR MaLR 5 426 0 1095 158 25 49 chr3 26263068 26263269 -201261309 + MSTB LTR MaLR 231 426 0 8677 191 17 21 chr3 26263269 26264910 -201259668 + MSTB-int LTR MaLR 1 1634 -17 2341 172 16 37 chr3 26264929 26265364 -201259214 + MSTB LTR MaLR 1 426 0 2644 165 18 12 chr3 26265364 26265867 -201258711 + L1MC1 LINE L1 5826 6331 -2 237 83 0 0 chr3 26265870 26265906 -201258672 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr3 26266620 26266649 -201257929 + AT_rich Low_complexity Low_complexity 1 29 0 180 233 116 70 chr3 26267446 26267532 -201257046 - MIR SINE MIR -112 150 61 1008 182 11 16 chr3 26267565 26267752 -201256826 - MER5A DNA MER1_type -3 186 1 379 149 14 27 chr3 26268408 26268482 -201256096 - L1PA10 LINE L1 -3 6165 6093 514 307 36 12 chr3 26268496 26268662 -201255916 - MIR SINE MIR -82 180 11 287 48 0 24 chr3 26268892 26268934 -201255644 + (CAA)n Simple_repeat Simple_repeat 2 42 0 262 333 62 56 chr3 26269496 26269658 -201254920 - MIR SINE MIR -54 208 46 9392 181 79 65 chr3 26270015 26271497 -201253081 + L1MCa LINE L1 6 1466 -4960 189 0 0 0 chr3 26271497 26271518 -201253060 + (TG)n Simple_repeat Simple_repeat 2 22 0 4275 137 14 3 chr3 26271519 26272225 -201252353 - L1MA3 LINE L1 -15 6290 5577 9392 181 79 65 chr3 26272225 26272642 -201251936 + L1MCa LINE L1 1466 1876 -4550 1756 211 79 107 chr3 26272642 26273490 -201251088 + LTR1B LTR ERV1 1 824 -2 9392 181 79 65 chr3 26273490 26274090 -201250488 + L1MCa LINE L1 1876 2557 -3869 1861 179 0 3 chr3 26274090 26274397 -201250181 + AluSx SINE Alu 1 306 -6 9392 181 79 65 chr3 26274397 26274880 -201249698 + L1MCa LINE L1 2557 3032 -3394 297 159 15 0 chr3 26274882 26274949 -201249629 + L1MC1 LINE L1 2507 2566 -3860 2523 251 38 6 chr3 26276536 26277377 -201247201 + L1MC1 LINE L1 3118 3985 -2441 873 269 52 3 chr3 26277367 26277691 -201246887 + L1MC1 LINE L1 4613 4952 -1474 * 3713 170 55 3 chr3 26277803 26278513 -201246065 + L1MC1 LINE L1 5867 6613 0 1526 203 39 25 chr3 26278514 26278873 -201245705 + L1MB8 LINE L1 5808 6171 -7 243 109 16 47 chr3 26279761 26279825 -201244753 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 436 272 79 45 chr3 26280152 26280466 -201244112 - MLT1H LTR MaLR -110 299 2 202 258 91 0 chr3 26280494 26280560 -201244018 + MIR SINE MIR 123 194 -68 240 236 14 0 chr3 26280740 26280812 -201243766 + L1ME3A LINE L1 6093 6165 -5 792 297 80 21 chr3 26281517 26281995 -201242583 + L1ME3A LINE L1 3498 4003 -2143 7812 16 1 0 chr3 26282170 26283069 -201241509 - L1PA3 LINE L1 -2 6153 5254 1600 170 3 14 chr3 26283249 26283531 -201241047 - L1PA16 LINE L1 -105 6061 5783 824 275 64 42 chr3 26283561 26284182 -201240396 + L1ME3A LINE L1 5148 5795 -375 2200 125 31 22 chr3 26284182 26284541 -201240037 + THE1B LTR MaLR 3 364 0 824 275 64 42 chr3 26284541 26284703 -201239875 + L1ME3A LINE L1 5795 5952 -218 32 26 0 0 chr3 26284877 26284916 -201239662 + AT_rich Low_complexity Low_complexity 1 39 0 1138 150 33 0 chr3 26285251 26285431 -201239147 + THE1B LTR MaLR 1 186 -178 6927 99 6 13 chr3 26285457 26287275 -201237303 - L1PA7 LINE L1 -2 6467 4660 42410 35 29 1 chr3 26287275 26293251 -201231327 - L1PA2 LINE L1 -7 6148 1 2411 98 9 0 chr3 26293249 26293585 -201230993 - L1PA7 LINE L1 -1785 4676 4338 * 1249 130 5 10 chr3 26293583 26293775 -201230803 - L1PA7 LINE L1 -6265 196 6 * 925 170 67 6 chr3 26293787 26293952 -201230626 + THE1B LTR MaLR 190 364 0 333 239 43 0 chr3 26294073 26294165 -201230413 - MIR SINE MIR -46 216 121 1670 284 74 15 chr3 26294516 26295718 -201228860 + L1ME3A LINE L1 4885 6162 -8 403 206 31 21 chr3 26295841 26295938 -201228640 + MER69 DNA AcHobo 4 101 -2425 4601 202 70 112 chr3 26296109 26297941 -201226637 - MER52A LTR ERV1 0 1755 1 2035 106 0 56 chr3 26298091 26298394 -201226184 + AluSx SINE Alu 1 286 -26 447 241 124 44 chr3 26299435 26299572 -201225006 + MER5A DNA MER1_type 2 149 -40 410 255 158 23 chr3 26300972 26301231 -201223347 - L1ME4a LINE L1 -9 6112 5819 1465 180 25 3 chr3 26301351 26301668 -201222910 - MER33 DNA MER1_type 0 324 1 527 225 24 6 chr3 26302149 26302318 -201222260 + Charlie2 DNA MER1_type 2509 2680 -182 40 21 0 0 chr3 26302354 26302401 -201222177 + AT_rich Low_complexity Low_complexity 1 47 0 321 235 157 0 chr3 26302506 26302608 -201221970 + MIR SINE MIR 89 206 -56 2246 115 7 0 chr3 26302682 26302986 -201221592 - AluSx SINE Alu -6 306 1 564 309 9 33 chr3 26302992 26303202 -201221376 - L2 LINE L2 -4 3309 3105 718 334 38 51 chr3 26303303 26303732 -201220846 + L2 LINE L2 2792 3218 -95 198 206 59 15 chr3 26303809 26303877 -201220701 - MIR SINE MIR -45 217 147 675 301 85 45 chr3 26303880 26304328 -201220250 - MLT1H LTR MaLR -5 544 79 218 313 0 5 chr3 26304367 26304438 -201220140 - MIR3 SINE MIR -36 172 102 27 29 0 0 chr3 26305505 26305539 -201219039 + AT_rich Low_complexity Low_complexity 1 34 0 191 287 56 46 chr3 26306561 26306669 -201217909 + L2 LINE L2 2869 2977 -295 601 289 34 21 chr3 26306723 26307112 -201217466 + L1MEc LINE L1 1445 1752 -4463 301 255 118 88 chr3 26307177 26307585 -201216993 + L1MCc LINE L1 36 455 -5968 9894 171 21 31 chr3 26307588 26310837 -201213741 + L1P3 LINE L1 12 3275 -3186 2363 216 43 16 chr3 26311188 26311901 -201212677 - L1MB7 LINE L1 -242 5942 5213 659 243 5 33 chr3 26312732 26312942 -201211636 + MER3 DNA MER1_type 1 204 -5 2229 210 68 38 chr3 26313093 26313727 -201210851 - L1MB8 LINE L1 -38 6140 5488 6475 82 14 1 chr3 26314052 26315815 -201208763 + L1PA8 LINE L1 4399 6172 0 314 335 7 26 chr3 26316084 26316239 -201208339 + L1MCc LINE L1 819 970 -5453 1873 280 64 10 chr3 26316243 26317043 -201207535 + L1ME3A LINE L1 5317 6159 -11 29 28 0 0 chr3 26317044 26317080 -201207498 + AT_rich Low_complexity Low_complexity 1 36 0 1574 85 0 9 chr3 26317667 26317891 -201206687 + L1PA13 LINE L1 5941 6162 -1 198 214 0 0 chr3 26318003 26318045 -201206533 - MIR SINE MIR -109 153 112 828 259 173 30 chr3 26318107 26318359 -201206219 - LTR16C LTR ERVL -3 488 165 1810 121 96 39 chr3 26318359 26318714 -201205864 - THE1C LTR MaLR 0 375 1 828 259 173 30 chr3 26318714 26318831 -201205747 - LTR16C LTR ERVL -326 165 66 381 319 61 44 chr3 26318985 26319345 -201205233 + MLT1K LTR MaLR 211 576 -12 591 261 36 52 chr3 26319353 26319683 -201204895 - HsTC2 DNA Tc2 -11 1887 1563 1011 231 94 44 chr3 26319719 26320771 -201203807 - L1MB5 LINE L1 -201 5973 4868 1976 190 33 32 chr3 26320772 26321322 -201203256 - MLT2A2 LTR ERVL 0 554 1 2394 153 26 16 chr3 26321326 26321918 -201202660 + MER4E LTR ERV1 1 766 0 326 297 34 34 chr3 26321921 26322039 -201202539 - L1MB5 LINE L1 -1285 4861 4744 1750 207 127 50 chr3 26322514 26323175 -201201403 + MER50 LTR ERV1 1 712 -22 2559 11 0 0 chr3 26323193 26323472 -201201106 - AluY SINE Alu -2 309 31 26 98 0 0 chr3 26323509 26323591 -201200987 + AT_rich Low_complexity Low_complexity 1 82 0 194 308 0 19 chr3 26323803 26323855 -201200723 - MIR SINE MIR -138 70 20 22 56 0 0 chr3 26323970 26324006 -201200572 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr3 26324136 26324164 -201200414 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 26324555 26324576 -201200002 + AT_rich Low_complexity Low_complexity 1 21 0 204 171 24 0 chr3 26324669 26324710 -201199868 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 224 336 103 9 chr3 26326270 26326386 -201198192 + MIR3 SINE MIR 81 207 -1 2437 73 0 0 chr3 26326783 26327083 -201197495 - AluY SINE Alu -11 300 1 296 109 0 16 chr3 26327855 26327919 -201196659 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 185 378 12 24 chr3 26328234 26328316 -201196262 - MIR SINE MIR -85 123 43 2253 121 0 0 chr3 26328432 26328737 -201195841 - AluSg SINE Alu -5 305 1 2307 77 7 0 chr3 26328882 26329169 -201195409 - AluY SINE Alu -14 297 9 1616 194 21 7 chr3 26329536 26329820 -201194758 + AluJb SINE Alu 2 289 -23 180 0 0 0 chr3 26329826 26329846 -201194732 + (TA)n Simple_repeat Simple_repeat 1 20 0 373 200 53 0 chr3 26330481 26330556 -201194022 - L2 LINE L2 -9 3304 3226 272 321 0 0 chr3 26330558 26330642 -201193936 - MIR SINE MIR -39 223 140 191 323 15 0 chr3 26330972 26331037 -201193541 - L2 LINE L2 -584 2730 2665 1220 207 37 52 chr3 26331041 26331312 -201193266 + AluJo SINE Alu 1 267 -45 244 321 46 0 chr3 26332570 26332701 -201191877 - MIR SINE MIR 0 262 126 248 259 0 0 chr3 26332882 26332940 -201191638 + MLT1J1 LTR MaLR 266 323 -123 234 285 141 62 chr3 26333652 26333908 -201190670 + MLT1J LTR MaLR 236 511 0 414 350 65 31 chr3 26334341 26334635 -201189943 - L2 LINE L2 -571 2743 2440 397 268 142 16 chr3 26334866 26335056 -201189522 - LTR16B LTR ERVL -65 399 186 307 296 20 0 chr3 26335253 26335351 -201189227 + MLT1I LTR MaLR 41 140 -269 424 240 130 7 chr3 26335421 26335567 -201189011 + MLT1I LTR MaLR 245 408 -1 226 265 0 29 chr3 26336032 26336100 -201188478 - MIR SINE MIR -98 164 99 535 273 83 30 chr3 26336677 26337121 -201187457 + MLT1G1 LTR MaLR 7 571 -24 1562 74 0 5 chr3 26337265 26337480 -201187098 - L1PA6 LINE L1 0 6154 5941 222 182 0 0 chr3 26338080 26338113 -201186465 + L2 LINE L2 3213 3245 -27 199 47 0 93 chr3 26342730 26342773 -201181805 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 31 44 0 0 chr3 26343460 26343505 -201181073 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr3 26343594 26343620 -201180958 + AT_rich Low_complexity Low_complexity 1 26 0 194 91 30 0 chr3 26343816 26343849 -201180729 + (CA)n Simple_repeat Simple_repeat 2 35 0 2384 107 0 0 chr3 26344398 26344707 -201179871 + AluSx SINE Alu 2 310 -2 2252 93 3 7 chr3 26345365 26345675 -201178903 - AluSg1 SINE Alu 0 309 1 333 321 111 59 chr3 26346849 26347406 -201177172 + L2 LINE L2 2317 2902 -412 24 0 0 0 chr3 26348707 26348731 -201175847 + AT_rich Low_complexity Low_complexity 1 24 0 288 303 45 6 chr3 26349476 26349654 -201174924 - L1MC/D LINE L1 -2333 5475 5291 236 26 26 0 chr3 26349858 26349896 -201174682 - L1MA3 LINE L1 0 6305 6267 651 302 132 60 chr3 26350109 26351195 -201173383 - L1MC/D LINE L1 -1306 4840 3677 251 282 34 27 chr3 26352355 26352370 -201172208 - L1MA10 LINE L1 0 6334 6320 748 224 127 17 chr3 26352370 26352607 -201171971 - L1ME1 LINE L1 -2 6164 5902 4059 181 15 15 chr3 26352612 26353336 -201171242 + MER44D DNA MER2_type 10 605 0 284 248 10 10 chr3 26353336 26353437 -201171141 - L1ME1 LINE L1 -263 5903 5803 1004 211 98 90 chr3 26354125 26354254 -201170324 - MER114 LTR ERV 0 648 521 1710 137 59 42 chr3 26354254 26354560 -201170018 + AluSx SINE Alu 1 311 -1 1004 211 98 90 chr3 26354560 26355073 -201169505 - MER114 LTR ERV -127 521 1 21 0 0 0 chr3 26355241 26355262 -201169316 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 26355297 26355350 -201169228 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 26355585 26355613 -201168965 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 26355673 26356098 -201168480 + Tigger2a DNA MER2_type 1 432 -2 493 347 47 5 chr3 26356392 26356585 -201167993 - MIR SINE MIR -4 258 58 601 214 78 5 chr3 26356976 26357176 -201167402 + L1MA10 LINE L1 5964 6331 -3 265 73 455 0 chr3 26357225 26357280 -201167298 + MADE1 DNA Mariner 1 80 0 232 349 48 24 chr3 26358433 26358559 -201166019 + L2 LINE L2 3185 3313 0 222 208 56 83 chr3 26359071 26359143 -201165435 - MIR SINE MIR -71 191 122 1229 187 89 20 chr3 26359668 26359861 -201164717 - L1MD2 LINE L1 -2 6357 6179 198 91 0 0 chr3 26359861 26359894 -201164684 + (TG)n Simple_repeat Simple_repeat 2 34 0 1229 187 89 20 chr3 26359894 26360008 -201164570 - L1MD2 LINE L1 -180 6179 6074 2021 117 13 0 chr3 26360008 26360180 -201164398 - AluSq SINE Alu -11 302 123 189 0 0 0 chr3 26360180 26360201 -201164377 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2021 117 13 0 chr3 26360201 26360326 -201164252 - AluSq SINE Alu -190 123 1 1229 187 89 20 chr3 26360326 26360499 -201164079 - L1MD2 LINE L1 -285 6074 5795 2324 60 40 0 chr3 26361247 26361545 -201163033 - AluY SINE Alu -1 310 1 226 283 0 0 chr3 26362285 26362338 -201162240 + (CA)n Simple_repeat Simple_repeat 2 54 0 323 315 0 0 chr3 26362584 26362673 -201161905 - L1MC4 LINE L1 -1340 6702 6614 314 296 23 0 chr3 26362683 26362771 -201161807 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr3 26362789 26362812 -201161766 + (TA)n Simple_repeat Simple_repeat 1 23 0 2090 66 42 11 chr3 26362812 26363099 -201161479 - AluY SINE Alu -15 296 1 253 280 105 35 chr3 26364257 26364400 -201160178 + L2 LINE L2 3129 3281 -32 598 296 75 26 chr3 26364572 26364798 -201159780 - MIR SINE MIR -12 250 14 425 314 8 8 chr3 26365049 26365167 -201159411 + MER5B DNA MER1_type 3 120 -58 312 170 19 0 chr3 26365375 26365428 -201159150 - L2 LINE L2 -9 3263 3210 23 33 0 0 chr3 26365475 26365505 -201159073 + AT_rich Low_complexity Low_complexity 1 30 0 200 184 0 0 chr3 26365618 26365656 -201158922 + (CA)n Simple_repeat Simple_repeat 1 38 0 2399 28 42 0 chr3 26367220 26367508 -201157070 - AluY SINE Alu -11 300 1 3200 216 19 6 chr3 26368759 26369394 -201155184 + MER82 DNA MER2_type 1 643 -10 23 54 0 0 chr3 26369546 26369583 -201154995 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr3 26370174 26370213 -201154365 + AT_rich Low_complexity Low_complexity 1 39 0 258 56 0 0 chr3 26372677 26372713 -201151865 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 236 140 0 20 chr3 26373251 26373301 -201151277 + LTR33A LTR ERVL 4 52 -471 655 274 136 37 chr3 26373314 26373690 -201150888 + L1M4 LINE L1 3074 3486 -2660 512 194 0 10 chr3 26374116 26374226 -201150352 + MLT1H LTR MaLR 18 137 -272 2347 73 0 10 chr3 26374246 26374560 -201150018 + AluY SINE Alu 1 311 0 870 205 139 93 chr3 26374576 26375073 -201149505 - MER114 LTR ERV -128 520 1 21 0 0 0 chr3 26375241 26375262 -201149316 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 26375297 26375350 -201149228 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 26375585 26375613 -201148965 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 26375673 26376098 -201148480 + Tigger2a DNA MER2_type 1 432 -2 470 352 47 5 chr3 26376392 26376585 -201147993 - MIR SINE MIR -4 258 58 1374 166 7 88 chr3 26378783 26379090 -201145488 + AluJo SINE Alu 31 312 0 405 0 0 0 chr3 26379627 26379672 -201144906 + (TG)n Simple_repeat Simple_repeat 1 45 0 201 74 0 0 chr3 26379672 26379699 -201144879 + (GA)n Simple_repeat Simple_repeat 2 28 0 397 122 27 0 chr3 26379988 26380062 -201144516 + A-rich Low_complexity Low_complexity 4 79 0 276 143 83 12 chr3 26380238 26380322 -201144256 + (TTTAA)n Simple_repeat Simple_repeat 1 90 0 213 319 0 0 chr3 26380339 26380408 -201144170 - L2 LINE L2 0 3313 3245 693 134 0 0 chr3 26382848 26382960 -201141618 + (GA)n Simple_repeat Simple_repeat 1 112 0 6079 130 33 21 chr3 26383433 26384473 -201140105 - L1MA5A LINE L1 -10 7003 5951 11843 210 6 13 chr3 26384641 26387321 -201137257 - L1MA5A LINE L1 -1280 5582 2920 273 198 47 9 chr3 26388094 26388200 -201136378 + (TA)n Simple_repeat Simple_repeat 2 111 0 31 92 0 0 chr3 26388613 26388700 -201135878 + AT_rich Low_complexity Low_complexity 1 87 0 2272 112 0 0 chr3 26389497 26389809 -201134769 + AluSx SINE Alu 1 312 0 327 161 0 0 chr3 26390702 26390758 -201133820 - MER94 DNA DNA -1 133 78 22 0 0 0 chr3 26390812 26390834 -201133744 + AT_rich Low_complexity Low_complexity 1 22 0 754 237 110 5 chr3 26391552 26392099 -201132479 - MER114 LTR ERV 0 648 2 23 86 0 0 chr3 26392570 26392628 -201131950 + AT_rich Low_complexity Low_complexity 1 58 0 258 56 0 0 chr3 26394234 26394270 -201130308 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 237 140 0 20 chr3 26394808 26394858 -201129720 + LTR33A LTR ERVL 4 52 -471 655 274 136 37 chr3 26394871 26395247 -201129331 + L1ME3A LINE L1 3074 3486 -2660 557 257 17 100 chr3 26395673 26395803 -201128775 + MLT1H LTR MaLR 18 157 -392 2254 60 0 11 chr3 26395803 26396087 -201128491 + AluY SINE Alu 1 281 -30 557 257 17 100 chr3 26396087 26396247 -201128331 + MLT1H LTR MaLR 157 327 -222 253 167 42 42 chr3 26396431 26396503 -201128075 + MLT1H LTR MaLR 478 549 0 589 311 74 9 chr3 26396519 26396869 -201127709 + L1ME3A LINE L1 3907 4279 -1867 692 282 131 34 chr3 26397328 26397843 -201126735 + L1ME3A LINE L1 5328 5884 -286 295 214 143 56 chr3 26398142 26398268 -201126310 + MER103 DNA DNA 26 162 -4 204 40 0 0 chr3 26398665 26398690 -201125888 + (A)n Simple_repeat Simple_repeat 1 25 0 764 197 34 30 chr3 26398972 26399206 -201125372 - LTR37A LTR ERV1 -1 425 191 929 193 45 6 chr3 26399254 26399430 -201125148 - MER58B DNA MER1_type 0 341 159 1607 128 88 81 chr3 26399943 26400294 -201124284 + MLT1B LTR MaLR 1 357 -33 1709 177 52 3 chr3 26400294 26400622 -201123956 + MER2 DNA MER2_type 1 344 0 1607 128 88 81 chr3 26400622 26400654 -201123924 + MLT1B LTR MaLR 357 387 -3 455 311 194 47 chr3 26400657 26401152 -201123426 - L2 LINE L2 -896 2418 1851 297 0 0 0 chr3 26401316 26401349 -201123229 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2202 95 0 0 chr3 26401353 26401627 -201122951 - AluSc SINE Alu -35 274 1 276 30 0 0 chr3 26401922 26401955 -201122623 + (T)n Simple_repeat Simple_repeat 1 33 0 15472 40 5 11 chr3 26401977 26404699 -201119879 - L1PA4 LINE L1 -3 6152 3440 5067 172 27 20 chr3 26405304 26406938 -201117640 - L1P4 LINE L1 -384 5782 4139 28 0 0 0 chr3 26407184 26407212 -201117366 + AT_rich Low_complexity Low_complexity 1 28 0 2519 57 7 0 chr3 26407263 26407563 -201117015 - AluSc SINE Alu -7 302 1 214 232 402 0 chr3 26407737 26407849 -201116729 - MER5A DNA MER1_type -7 182 26 22 35 0 0 chr3 26410863 26410892 -201113686 + AT_rich Low_complexity Low_complexity 1 29 0 1106 181 86 102 chr3 26410943 26411246 -201113332 + AluJb SINE Alu 2 299 -3 314 242 81 48 chr3 26411416 26411540 -201113038 + L1M4 LINE L1 2249 2376 -3770 190 279 82 0 chr3 26412993 26413054 -201111524 + L2 LINE L2 3207 3272 0 2254 104 7 0 chr3 26413372 26413670 -201110908 - AluSq SINE Alu -13 300 1 386 257 20 0 chr3 26413695 26413796 -201110782 - MIR SINE MIR -14 248 146 898 315 99 3 chr3 26413889 26414241 -201110337 + LTR16C LTR ERVL 92 477 -14 256 322 0 22 chr3 26414242 26414332 -201110246 - MIR SINE MIR -127 135 48 567 248 47 51 chr3 26415707 26415921 -201108657 + MLT1J LTR MaLR 38 250 -261 1739 193 42 26 chr3 26415923 26416306 -201108272 + MLT1B LTR MaLR 1 389 -1 1524 118 0 5 chr3 26416327 26416547 -201108031 - L1P LINE L1 -1874 4272 4054 749 52 21 0 chr3 26416547 26416643 -201107935 + L1PA10 LINE L1 6067 6164 -4 546 183 29 0 chr3 26417021 26417125 -201107453 - MER20 DNA MER1_type 0 219 113 710 244 92 11 chr3 26417348 26417631 -201106947 - MER113 DNA MER1_type? -215 306 1 259 367 147 9 chr3 26417809 26418027 -201106551 - MIR SINE MIR 0 262 15 416 350 38 12 chr3 26418558 26418718 -201105860 - MIR3 SINE MIR -9 199 36 286 354 69 0 chr3 26418748 26418878 -201105700 - L3 LINE CR1 -31 1546 1408 1043 250 36 47 chr3 26418946 26419306 -201105272 + L2 LINE L2 2121 2476 -838 544 261 32 6 chr3 26419326 26419483 -201105095 + LTR41 LTR ERVL 6 166 -607 263 196 33 76 chr3 26419915 26420007 -201104571 + LTR41 LTR ERVL 679 766 -7 1121 261 52 50 chr3 26420018 26420420 -201104158 + LTR16A1 LTR ERVL 55 457 0 214 358 0 12 chr3 26420424 26420505 -201104073 - MIR SINE MIR -168 94 15 796 310 50 0 chr3 26422675 26422917 -201101661 - MIR SINE MIR -5 257 4 253 294 128 10 chr3 26423571 26423673 -201100905 + L2 LINE L2 2031 2144 -1170 1071 303 67 38 chr3 26423673 26423789 -201100789 + L2 LINE L2 2710 2821 -492 1976 168 107 19 chr3 26423789 26424218 -201100360 - MLT1C LTR MaLR 0 467 1 1071 303 67 38 chr3 26424218 26424670 -201099908 + L2 LINE L2 2821 3300 -13 242 361 70 51 chr3 26425267 26425425 -201099153 + L2 LINE L2 3103 3263 -9 1393 289 96 21 chr3 26426058 26426578 -201098000 + MER69 DNA AcHobo 1 559 -1967 693 222 83 28 chr3 26426554 26426806 -201097772 + MER69 DNA AcHobo 2260 2525 -1 * 2232 95 0 13 chr3 26427016 26427320 -201097258 - AluSc SINE Alu -9 300 1 180 152 0 0 chr3 26428676 26428709 -201095869 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 773 193 138 0 chr3 26429731 26429876 -201094702 - FRAM SINE Alu -1 165 1 1447 293 96 14 chr3 26431086 26431574 -201093004 - MLT1H1 LTR MaLR -8 547 20 594 265 135 30 chr3 26432495 26432725 -201091853 - MIR SINE MIR -6 256 3 188 378 9 27 chr3 26432888 26432999 -201091579 + MIR SINE MIR 37 145 -63 707 224 85 6 chr3 26433068 26433233 -201091345 - MER45A DNA AcHobo 0 178 1 293 316 74 111 chr3 26433812 26434457 -201090121 + L2 LINE L2 2637 3272 0 184 366 43 21 chr3 26435356 26435449 -201089129 + MIR SINE MIR 46 140 -122 642 259 103 22 chr3 26435586 26435771 -201088807 + MIR SINE MIR 63 262 0 714 343 83 41 chr3 26435851 26436411 -201088167 - L2 LINE L2 -26 3246 2673 711 159 140 6 chr3 26436451 26436608 -201087970 + MER5A DNA MER1_type 9 186 -3 338 333 14 54 chr3 26436608 26436755 -201087823 - L2 LINE L2 -722 2592 2452 552 272 63 16 chr3 26438194 26438475 -201086103 + LTR16B LTR ERVL 16 363 -101 637 219 11 115 chr3 26438567 26438846 -201085732 + L2 LINE L2 3064 3313 0 288 321 92 25 chr3 26439978 26440174 -201084404 + MIR SINE MIR 40 248 -14 582 82 0 0 chr3 26440651 26440736 -201083842 + (TCCCC)n Simple_repeat Simple_repeat 4 88 0 22 56 0 0 chr3 26440814 26440850 -201083728 + AT_rich Low_complexity Low_complexity 1 36 0 348 127 0 0 chr3 26442002 26442057 -201082521 + (TG)n Simple_repeat Simple_repeat 2 56 0 2615 146 35 9 chr3 26442596 26443054 -201081524 + L1MA4 LINE L1 5551 6020 -280 293 155 31 113 chr3 26443062 26443113 -201081465 + L1MB4 LINE L1 6091 6132 -48 1382 217 50 4 chr3 26443113 26443394 -201081184 + AluJo SINE Alu 1 294 -18 293 155 31 113 chr3 26443394 26443439 -201081139 + L1MB4 LINE L1 6132 6179 -1 779 158 6 22 chr3 26444233 26444416 -201080162 + GA-rich Low_complexity Low_complexity 1 180 0 335 307 10 10 chr3 26445217 26445318 -201079260 - MIR SINE MIR -66 142 42 25 65 0 0 chr3 26445948 26445994 -201078584 + AT_rich Low_complexity Low_complexity 1 46 0 808 273 45 21 chr3 26446168 26446454 -201078124 - L1ME3A LINE L1 -80 6090 5798 538 318 38 26 chr3 26447200 26447498 -201077080 - MLT1L LTR MaLR -14 601 215 227 244 0 77 chr3 26447563 26447641 -201076937 - MLT1J LTR MaLR -331 180 109 230 336 41 34 chr3 26447785 26447931 -201076647 - MIR SINE MIR -111 151 5 484 255 183 7 chr3 26448098 26448251 -201076327 + MER5A DNA MER1_type 10 189 0 611 284 76 47 chr3 26448260 26448535 -201076043 + L2 LINE L2 3029 3311 -2 1220 196 47 22 chr3 26449781 26450098 -201074480 + AluJo SINE Alu 1 324 0 223 318 79 0 chr3 26451172 26451235 -201073343 + L2 LINE L2 3141 3208 -64 1517 99 5 0 chr3 26451309 26451522 -201073056 + L1PB1 LINE L1 5935 6148 -3 21 0 0 0 chr3 26451645 26451666 -201072912 + AT_rich Low_complexity Low_complexity 1 21 0 411 272 25 51 chr3 26452843 26453001 -201071577 + MER117 DNA MER1_type 44 197 0 2580 52 0 0 chr3 26453313 26453622 -201070956 + AluY SINE Alu 1 309 -2 644 211 0 8 chr3 26454023 26454151 -201070427 + FLAM_A SINE Alu 3 129 -4 507 79 34 0 chr3 26454243 26454332 -201070246 + L1PA13 LINE L1 6071 6162 -1 21 36 0 0 chr3 26454332 26454360 -201070218 + AT_rich Low_complexity Low_complexity 1 28 0 37 69 0 0 chr3 26454494 26454566 -201070012 + AT_rich Low_complexity Low_complexity 1 72 0 2240 121 0 3 chr3 26454639 26454952 -201069626 + AluSx SINE Alu 1 312 0 234 242 45 0 chr3 26454957 26455023 -201069555 - MER113 DNA MER1_type? -451 70 2 42 20 0 0 chr3 26455479 26455528 -201069050 + AT_rich Low_complexity Low_complexity 1 49 0 712 249 144 18 chr3 26455642 26455871 -201068707 - MIR SINE MIR 0 262 5 289 241 28 0 chr3 26456006 26456114 -201068464 + (TA)n Simple_repeat Simple_repeat 1 111 0 2435 239 55 73 chr3 26456222 26457048 -201067530 - MER21B LTR ERV1 -52 811 1 213 269 125 19 chr3 26457093 26457197 -201067381 - L3b LINE CR1 -166 1417 1303 279 122 0 0 chr3 26457498 26457547 -201067031 + (TC)n Simple_repeat Simple_repeat 2 50 0 285 98 0 0 chr3 26457549 26457590 -201066988 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 234 0 140 chr3 26457640 26457747 -201066831 - MER91C DNA MER1_type -17 123 32 371 302 89 40 chr3 26458836 26459061 -201065517 - MIR SINE MIR -6 256 21 235 294 35 24 chr3 26459069 26459154 -201065424 + MER58B DNA MER1_type 21 106 -235 552 216 64 0 chr3 26459179 26459304 -201065274 + MER58B DNA MER1_type 208 340 -1 2979 107 49 0 chr3 26460176 26460623 -201063955 - THE1A-int LTR MaLR -535 1045 577 1708 77 13 0 chr3 26460623 26460856 -201063722 - THE1A-int LTR MaLR -1344 236 1 2007 121 35 11 chr3 26460856 26461203 -201063375 - THE1A LTR MaLR 0 355 1 430 256 0 58 chr3 26461747 26461884 -201062694 + L1ME LINE L1 5530 5658 -463 23 33 0 0 chr3 26462118 26462148 -201062430 + AT_rich Low_complexity Low_complexity 1 30 0 184 308 132 33 chr3 26462158 26462340 -201062238 + L2 LINE L2 3112 3311 -2 266 356 61 44 chr3 26463472 26463652 -201060926 - MER91A DNA MER1_type -12 184 2 202 182 0 0 chr3 26464383 26464416 -201060162 + polypurine Low_complexity Low_complexity 1 33 0 1058 161 56 5 chr3 26464481 26464683 -201059895 + MER6 DNA MER2_type -13 198 -78 1587 70 4 3 chr3 26464683 26464918 -201059660 - pTR5 LTR ERV1 -2053 385 49 347 235 0 0 chr3 26464918 26464999 -201059579 - LTR30 LTR ERV1 -98 624 544 2291 167 103 37 chr3 26465003 26465755 -201058823 - pTR5 LTR ERV1 -417 2021 741 2577 142 22 2 chr3 26465755 26466164 -201058414 + MER6 DNA MER2_type 188 864 -1 657 303 45 0 chr3 26468204 26468382 -201056196 - MER91A DNA MER1_type -10 186 1 24 0 0 0 chr3 26468856 26468880 -201055698 + AT_rich Low_complexity Low_complexity 1 24 0 491 373 34 28 chr3 26469004 26469331 -201055247 - L3 LINE CR1 -15 1562 1234 442 310 45 20 chr3 26470029 26470313 -201054265 - MLT1L LTR MaLR 0 615 224 24 0 0 0 chr3 26470493 26470517 -201054061 + AT_rich Low_complexity Low_complexity 1 24 0 572 61 0 12 chr3 26470581 26470663 -201053915 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 27 0 0 0 chr3 26470720 26470747 -201053831 + AT_rich Low_complexity Low_complexity 1 27 0 1193 319 94 33 chr3 26471060 26471276 -201053302 + L2 LINE L2 2034 2235 -1079 2405 82 3 0 chr3 26471276 26471582 -201052996 + AluSp SINE Alu 1 307 -6 1193 319 94 33 chr3 26471582 26471969 -201052609 + L2 LINE L2 2235 2674 -640 200 180 0 20 chr3 26472081 26472131 -201052447 + CT-rich Low_complexity Low_complexity 4 52 0 512 333 0 0 chr3 26472220 26472367 -201052211 - MIR3 SINE MIR -3 205 59 318 26 0 0 chr3 26472659 26472698 -201051880 + (CA)n Simple_repeat Simple_repeat 2 40 0 228 233 33 100 chr3 26472842 26472962 -201051616 - L2 LINE L2 -211 3102 2991 223 367 50 25 chr3 26473055 26473175 -201051403 - L2 LINE L2 -502 2812 2690 327 279 25 81 chr3 26473264 26473425 -201051153 + L3 LINE CR1 1425 1576 -1 322 326 10 77 chr3 26473617 26473813 -201050765 - MER5A DNA MER1_type 0 189 7 294 340 122 13 chr3 26473934 26474090 -201050488 + MIR SINE MIR 76 248 -14 290 272 12 12 chr3 26524106 26524187 -201000391 + CT-rich Low_complexity Low_complexity 3 83 0 302 417 36 7 chr3 26524975 26525114 -200999464 + L2 LINE L2 3121 3263 -9 209 298 12 17 chr3 26525362 26525541 -200999037 + C-rich Low_complexity Low_complexity 1 178 0 265 272 117 31 chr3 26525714 26525876 -200998702 - L2 LINE L2 -1207 2107 1932 7205 105 8 2 chr3 26525943 26527009 -200997569 + L1PA13 LINE L1 1295 2366 -3780 1223 146 0 5 chr3 26527175 26527360 -200997218 + THE1B LTR MaLR 181 364 0 21 0 0 0 chr3 26527481 26527502 -200997076 + AT_rich Low_complexity Low_complexity 1 21 0 450 316 6 6 chr3 26527643 26527814 -200996764 + CT-rich Low_complexity Low_complexity 2 172 0 25 75 0 0 chr3 26528101 26528154 -200996424 + GC_rich Low_complexity Low_complexity 1 53 0 257 228 16 49 chr3 26528184 26528368 -200996210 + (CCGCG)n Simple_repeat Simple_repeat 1 178 0 22 42 0 0 chr3 26529445 26529469 -200995109 + AT_rich Low_complexity Low_complexity 1 24 0 9612 96 66 13 chr3 26529625 26530666 -200993912 - L1PBa LINE L1 -3939 2924 1624 2409 94 0 0 chr3 26530666 26530975 -200993603 + AluY SINE Alu 1 309 -2 9612 96 66 13 chr3 26530975 26531532 -200993046 - L1PBa LINE L1 -5239 1624 1098 1185 122 5 0 chr3 26531533 26531721 -200992857 - L1PBa LINE L1 -5814 1049 861 1805 149 12 28 chr3 26531725 26532046 -200992532 - THE1C LTR MaLR -40 335 20 5819 101 16 19 chr3 26532046 26533854 -200990724 + L1PA13 LINE L1 4354 6154 -9 243 0 0 0 chr3 26533854 26533881 -200990697 + (TA)n Simple_repeat Simple_repeat 1 27 0 713 281 128 76 chr3 26534246 26534744 -200989834 - MLT1H1 LTR MaLR 0 555 32 1890 155 7 0 chr3 26534803 26535087 -200989491 - AluSx SINE Alu -26 286 1 405 320 69 36 chr3 26535246 26535493 -200989085 + MIR SINE MIR 2 256 -6 234 0 0 0 chr3 26538748 26538774 -200985804 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2252 84 0 3 chr3 26538793 26539077 -200985501 - AluSc SINE Alu -26 283 1 1813 107 0 4 chr3 26539082 26539352 -200985226 - L1MA3 LINE L1 0 6305 6037 2594 185 136 49 chr3 26539679 26540109 -200984469 - L1MD2 LINE L1 -289 6053 5662 2246 113 7 0 chr3 26540109 26540418 -200984160 - AluSx SINE Alu 0 312 2 2594 185 136 49 chr3 26540418 26540787 -200983791 - L1MD2 LINE L1 -680 5662 5187 949 198 145 12 chr3 26540787 26541035 -200983543 - MER97a DNA MER1_type? -613 281 1 236 275 77 0 chr3 26541134 26541225 -200983353 + HAL1b LINE L1 578 675 -673 677 275 103 55 chr3 26541407 26541774 -200982804 - LTR16A LTR ERVL -48 402 18 517 204 10 0 chr3 26541842 26541945 -200982633 + FAM SINE Alu 71 174 -11 267 260 73 13 chr3 26542212 26542362 -200982216 + L1ME4a LINE L1 5963 6121 0 359 273 94 31 chr3 26542633 26542889 -200981689 - L1MD2 LINE L1 -2153 3976 3705 447 202 0 0 chr3 26542902 26542996 -200981582 + (TA)n Simple_repeat Simple_repeat 1 94 0 354 302 117 71 chr3 26543210 26544012 -200980566 - L1MD2 LINE L1 -2682 3447 2609 21 82 0 0 chr3 26544189 26544238 -200980340 + AT_rich Low_complexity Low_complexity 1 49 0 224 287 81 35 chr3 26544595 26544682 -200979896 + MIR SINE MIR 20 110 -152 264 383 22 36 chr3 26545151 26545373 -200979205 + L2 LINE L2 2536 2754 -560 265 407 38 25 chr3 26545549 26545785 -200978793 + L2 LINE L2 2699 2937 -377 213 39 0 0 chr3 26545881 26545907 -200978671 + (CCA)n Simple_repeat Simple_repeat 3 28 0 225 293 67 13 chr3 26546077 26546152 -200978426 + MLT1J LTR MaLR 72 150 -361 312 296 21 88 chr3 26546198 26546438 -200978140 - L1ME3A LINE L1 -219 5951 5728 233 357 10 10 chr3 26546545 26546643 -200977935 - L1MD2 LINE L1 -5595 524 427 606 286 84 14 chr3 26547447 26547660 -200976918 + MIR SINE MIR 20 247 -15 27 0 0 0 chr3 26547817 26547844 -200976734 + AT_rich Low_complexity Low_complexity 1 27 0 1080 8 0 0 chr3 26547844 26547967 -200976611 - L1HS LINE L1 0 6155 6033 3875 159 50 18 chr3 26548281 26548967 -200975611 - MER50 LTR ERV1 -26 708 1 374 276 135 22 chr3 26549079 26549390 -200975188 + L1MC/D LINE L1 5267 5612 -2196 191 309 12 24 chr3 26552293 26552377 -200972201 - MIR SINE MIR -56 206 124 23 0 0 0 chr3 26553304 26553327 -200971251 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 26556644 26556678 -200967900 + AT_rich Low_complexity Low_complexity 1 34 0 36825 63 2 2 chr3 26557820 26563372 -200961206 + L1PA5 LINE L1 596 6145 -9 401 264 16 25 chr3 26563688 26563809 -200960769 - MER103 DNA DNA -46 120 1 219 371 77 21 chr3 26564097 26564240 -200960338 - MIR3 SINE MIR 0 208 58 434 302 49 65 chr3 26564525 26564944 -200959634 + MLT1L LTR MaLR 120 587 -28 362 269 71 50 chr3 26565418 26565600 -200958978 + HAL1 LINE L1 1365 1550 -957 689 185 23 6 chr3 26565628 26565801 -200958777 + CT-rich Low_complexity Low_complexity 2 177 0 426 311 44 11 chr3 26566647 26566827 -200957751 + L1M4 LINE L1 2276 2461 -3685 912 209 17 0 chr3 26567008 26567180 -200957398 - MER20 DNA MER1_type -1 218 44 290 250 12 0 chr3 26567195 26567275 -200957303 + L1MC4a LINE L1 5851 5931 -1877 235 255 34 67 chr3 26567701 26567850 -200956728 + L1MC/D LINE L1 5678 5821 -1987 797 244 42 9 chr3 26567856 26568073 -200956505 + MER58A DNA MER1_type 1 224 0 270 234 188 73 chr3 26568093 26568311 -200956267 - MER20B DNA MER1_type -22 761 519 278 316 115 7 chr3 26568803 26568942 -200955636 - MER20B DNA MER1_type -582 201 48 1688 211 75 56 chr3 26569583 26570103 -200954475 - MER34 LTR ERV1 0 542 13 1807 143 47 7 chr3 26570136 26570436 -200954142 - AluJb SINE Alu 0 312 1 202 315 0 0 chr3 26571558 26571612 -200952966 + CT-rich Low_complexity Low_complexity 4 57 0 307 275 47 31 chr3 26572869 26573062 -200951516 - L1ME4a LINE L1 -237 5884 5689 1047 308 50 8 chr3 26573075 26573435 -200951143 - L2 LINE L2 0 3313 2939 22 0 0 0 chr3 26574152 26574174 -200950404 + AT_rich Low_complexity Low_complexity 1 22 0 252 306 35 35 chr3 26574482 26574652 -200949926 + L2 LINE L2 2785 2954 -360 324 59 24 47 chr3 26574879 26574964 -200949614 + (TA)n Simple_repeat Simple_repeat 2 84 0 21 0 0 0 chr3 26576332 26576353 -200948225 + AT_rich Low_complexity Low_complexity 1 21 0 191 315 0 0 chr3 26576518 26576576 -200948002 - MIR SINE MIR -63 145 97 615 345 97 50 chr3 26576739 26577546 -200947032 + L2 LINE L2 1932 2776 -538 226 318 139 35 chr3 26577671 26577844 -200946734 + L2 LINE L2 3119 3309 -4 259 310 43 26 chr3 26577847 26577963 -200946615 - MIR SINE MIR -96 166 49 26 50 0 0 chr3 26577963 26578003 -200946575 + AT_rich Low_complexity Low_complexity 1 40 0 42187 37 23 0 chr3 26578095 26584110 -200940468 - L1PA2 LINE L1 -2 6153 1 312 207 35 11 chr3 26584957 26585044 -200939534 - MER53 DNA DNA -97 92 4 610 325 109 32 chr3 26585536 26585847 -200938731 - MLT1J1 LTR MaLR -110 336 2 2243 103 3 3 chr3 26586844 26587145 -200937433 + AluSc SINE Alu 1 301 -8 947 244 29 22 chr3 26588672 26588987 -200935591 + L1ME3A LINE L1 4790 5106 -1040 371 287 106 51 chr3 26589055 26589348 -200935230 + L1ME3A LINE L1 5323 5631 -539 369 284 98 5 chr3 26589393 26589587 -200934991 + L1ME3A LINE L1 5945 6156 -14 368 345 88 5 chr3 26589782 26589976 -200934602 + MIR SINE MIR 37 246 -16 195 222 0 0 chr3 26590135 26590180 -200934398 + (TAA)n Simple_repeat Simple_repeat 1 45 0 917 270 66 38 chr3 26590267 26590663 -200933915 - MLT1I LTR MaLR -2 407 1 1915 120 24 14 chr3 26590865 26591157 -200933421 - AluSx SINE Alu -17 295 1 28 29 0 0 chr3 26591413 26591448 -200933130 + AT_rich Low_complexity Low_complexity 1 35 0 320 202 27 32 chr3 26592087 26592206 -200932372 + L1ME LINE L1 5426 5545 -621 195 354 46 0 chr3 26592221 26592286 -200932292 + L3 LINE CR1 1038 1105 -472 431 309 70 45 chr3 26592473 26592716 -200931862 + L3 LINE CR1 1130 1378 -199 441 218 27 0 chr3 26592718 26592828 -200931750 + L1MA4 LINE L1 6188 6300 0 260 326 106 28 chr3 26594854 26594995 -200929583 + MIR SINE MIR 61 212 -50 654 202 12 152 chr3 26596266 26596509 -200928069 + MIR SINE MIR 30 237 -25 904 238 58 0 chr3 26596610 26596816 -200927762 - MLT1E3 LTR MaLR 0 624 407 1715 193 3 7 chr3 26597113 26597414 -200927164 - AluJo SINE Alu -12 300 1 552 352 38 0 chr3 26597416 26597626 -200926952 + MIR SINE MIR 45 262 0 251 259 6 17 chr3 26597830 26597958 -200926620 + CT-rich Low_complexity Low_complexity 1 126 0 205 183 50 0 chr3 26599558 26599618 -200924960 + (TA)n Simple_repeat Simple_repeat 1 63 0 201 74 0 0 chr3 26599803 26599830 -200924748 + (A)n Simple_repeat Simple_repeat 1 27 0 255 290 151 43 chr3 26600317 26600503 -200924075 + MIR SINE MIR 52 257 -5 363 186 0 0 chr3 26601404 26601463 -200923115 - L2 LINE L2 0 3313 3255 261 57 0 0 chr3 26601961 26601996 -200922582 + (GA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 26602464 26602493 -200922085 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 26602824 26602845 -200921733 + AT_rich Low_complexity Low_complexity 1 21 0 203 138 0 0 chr3 26604137 26604166 -200920412 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 339 391 19 6 chr3 26604758 26604919 -200919659 + MIR3 SINE MIR 17 179 -29 254 280 21 0 chr3 26604968 26605061 -200919517 + L1MC4 LINE L1 6611 6705 -1337 278 232 293 0 chr3 26605639 26605738 -200918840 - L2 LINE L2 -15 3298 3171 418 308 63 0 chr3 26606130 26606273 -200918305 + MIR SINE MIR 110 261 -1 216 0 0 0 chr3 26607716 26607740 -200916838 + (A)n Simple_repeat Simple_repeat 1 24 0 316 283 10 20 chr3 26608625 26608724 -200915854 - MER5A DNA MER1_type -83 106 9 293 315 39 24 chr3 26609530 26609657 -200914921 - MER103 DNA DNA -2 164 36 215 204 0 41 chr3 26610030 26610079 -200914499 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 351 0 0 0 chr3 26610846 26610885 -200913693 + (TA)n Simple_repeat Simple_repeat 1 39 0 255 282 76 32 chr3 26612530 26612807 -200911771 - L1M4 LINE L1 -1528 4618 4330 259 345 43 9 chr3 26613188 26613304 -200911274 + MIR SINE MIR 33 152 -56 284 275 0 0 chr3 26614183 26614252 -200910326 - MIR3 SINE MIR -4 204 136 258 323 0 0 chr3 26614334 26614399 -200910179 + MIR3 SINE MIR 112 176 -32 13496 204 23 19 chr3 26614834 26619248 -200905330 + L1PA16 LINE L1 709 5111 -1758 273 29 0 0 chr3 26619248 26619282 -200905296 + (CA)n Simple_repeat Simple_repeat 1 34 0 13496 204 23 19 chr3 26619282 26621041 -200903537 + L1PA16 LINE L1 5111 6862 -7 1199 179 18 14 chr3 26621042 26621265 -200903313 + MLT1B LTR MaLR 165 388 -2 244 333 49 14 chr3 26622177 26622321 -200902257 - MIR SINE MIR -11 251 103 22 35 0 0 chr3 26622431 26622460 -200902118 + AT_rich Low_complexity Low_complexity 1 29 0 653 243 50 30 chr3 26622649 26622851 -200901727 - MIR SINE MIR 0 262 57 417 297 87 48 chr3 26623040 26623174 -200901404 - L1ME LINE L1 -445 5702 5575 399 66 105 53 chr3 26623174 26623250 -200901328 + MADE1 DNA Mariner 1 80 0 417 297 87 48 chr3 26623250 26623523 -200901055 - L1ME LINE L1 -572 5575 5279 407 321 110 52 chr3 26623939 26624440 -200900138 - L1ME LINE L1 -5279 840 311 313 175 21 113 chr3 26624635 26624732 -200899846 + L1MC4 LINE L1 6620 6707 -1335 268 388 56 6 chr3 26625570 26625730 -200898848 - L2 LINE L2 -238 3034 2867 422 295 60 12 chr3 26625916 26626082 -200898496 - Charlie8 DNA MER1_type -2239 178 5 2744 3 0 3 chr3 26626680 26626984 -200897594 - AluY SINE Alu -8 303 1 302 311 141 23 chr3 26627470 26627647 -200896931 + MIR SINE MIR 18 215 -47 22 0 0 0 chr3 26629264 26629286 -200895292 + AT_rich Low_complexity Low_complexity 1 22 0 304 365 81 5 chr3 26629879 26630076 -200894502 - MIR SINE MIR 0 262 51 343 322 35 9 chr3 26630159 26630274 -200894304 - L2 LINE L2 -6 3266 3149 26 30 0 0 chr3 26630746 26630779 -200893799 + AT_rich Low_complexity Low_complexity 1 33 0 4496 113 35 0 chr3 26630780 26631121 -200893457 - L1PB1 LINE L1 -6 6145 5817 189 0 0 0 chr3 26631121 26631142 -200893436 + (TG)n Simple_repeat Simple_repeat 2 22 0 4496 113 35 0 chr3 26631142 26631488 -200893090 - L1PB1 LINE L1 -334 5817 5434 3515 209 29 7 chr3 26631488 26632344 -200892234 + L1PB1 LINE L1 4534 5406 -754 252 261 225 46 chr3 26633229 26633509 -200891069 + L3 LINE CR1 1070 1399 -178 216 322 85 34 chr3 26633992 26634110 -200890468 + L3 LINE CR1 1371 1494 -83 602 255 49 27 chr3 26636048 26636232 -200888346 - MIR SINE MIR -16 246 59 2443 51 0 10 chr3 26636647 26636958 -200887620 - AluY SINE Alu -3 308 1 3671 95 33 0 chr3 26637059 26637605 -200886973 - L1PA13 LINE L1 0 6163 5600 9941 168 15 27 chr3 26637605 26639541 -200885037 - L1PA13 LINE L1 -1146 5000 3088 417 299 103 60 chr3 26640951 26641135 -200883443 - MIR3 SINE MIR -11 197 6 835 181 30 35 chr3 26641438 26641637 -200882941 + L1MD3 LINE L1 7796 7993 -2 1192 142 22 13 chr3 26642464 26642689 -200881889 + L1MA9 LINE L1 6086 6312 0 335 256 178 0 chr3 26642751 26642841 -200881737 + MIR SINE MIR 48 153 -109 233 342 51 8 chr3 26642878 26642995 -200881583 + MIR SINE MIR 137 258 -4 324 188 79 14 chr3 26644339 26644427 -200880151 + MER5A DNA MER1_type 76 188 -1 270 218 11 35 chr3 26644876 26644963 -200879615 - L1MA10 LINE L1 -9 6325 6241 277 322 26 26 chr3 26645050 26645165 -200879413 - L2 LINE L2 -200 3072 2958 248 257 57 38 chr3 26646302 26646407 -200878171 + MIR3 SINE MIR 81 187 -21 450 316 6 6 chr3 26647361 26647532 -200877046 + GA-rich Low_complexity Low_complexity 2 172 0 21 0 0 0 chr3 26647674 26647695 -200876883 + AT_rich Low_complexity Low_complexity 1 21 0 2469 123 0 8 chr3 26647816 26648183 -200876395 - THE1B LTR MaLR 0 364 1 289 270 63 9 chr3 26648241 26648352 -200876226 - MIR SINE MIR -3 259 143 552 248 81 10 chr3 26648370 26648568 -200876010 + LTR50 LTR ERVL 9 220 -575 425 309 75 12 chr3 26648641 26648936 -200875642 + LTR33A LTR ERVL 291 523 0 440 269 10 0 chr3 26648942 26649046 -200875532 - MIR SINE MIR -111 151 47 188 286 13 78 chr3 26649357 26649434 -200875144 - L2 LINE L2 -67 3205 3134 275 279 47 0 chr3 26650366 26650452 -200874126 - MIR SINE MIR -71 191 102 45 79 0 0 chr3 26650484 26650585 -200873993 + AT_rich Low_complexity Low_complexity 1 101 0 407 200 0 9 chr3 26650857 26650962 -200873616 + (TA)n Simple_repeat Simple_repeat 1 104 0 2305 266 83 38 chr3 26651175 26652982 -200871596 + L1ME3A LINE L1 4266 6157 -13 235 327 55 42 chr3 26653055 26653272 -200871306 + HAL1 LINE L1 2245 2464 -43 315 410 36 7 chr3 26653328 26653467 -200871111 - L2 LINE L2 -9 3263 3121 238 239 11 11 chr3 26654260 26654348 -200870230 + GA-rich Low_complexity Low_complexity 3 90 0 447 286 94 54 chr3 26655626 26655829 -200868749 - MIR SINE MIR -31 231 21 243 0 0 0 chr3 26656776 26656803 -200867775 + (TA)n Simple_repeat Simple_repeat 1 27 0 225 248 178 0 chr3 26659058 26659159 -200865419 - MIR SINE MIR -71 191 73 1586 167 3 14 chr3 26659587 26659880 -200864698 + AluJb SINE Alu 1 290 -22 355 370 7 7 chr3 26659895 26660030 -200864548 - L2 LINE L2 -1 3312 3178 222 308 0 13 chr3 26660021 26660099 -200864479 - L2 LINE L2 -711 2603 2527 * 2808 139 12 10 chr3 26660367 26660849 -200863729 + L1PB4 LINE L1 5673 6155 -1 1663 171 134 0 chr3 26661024 26661345 -200863233 + MLT1A1 LTR MaLR 2 365 0 477 0 0 0 chr3 26661629 26661682 -200862896 + (TG)n Simple_repeat Simple_repeat 2 54 0 206 328 0 30 chr3 26663127 26663194 -200861384 + L2 LINE L2 3249 3313 0 200 280 40 67 chr3 26663813 26663888 -200860690 - L2 LINE L2 -12 3260 3188 21 36 0 0 chr3 26663909 26663937 -200860641 + AT_rich Low_complexity Low_complexity 1 28 0 418 306 102 25 chr3 26665468 26665664 -200858914 - MIR SINE MIR -7 255 45 5479 138 31 28 chr3 26665978 26667300 -200857278 - L1MA8 LINE L1 -34 6257 4933 204 97 0 0 chr3 26667429 26667460 -200857118 + (TC)n Simple_repeat Simple_repeat 2 32 0 312 276 70 65 chr3 26668068 26668186 -200856392 - L1ME LINE L1 -5852 218 97 2363 118 36 16 chr3 26668186 26668551 -200856027 + THE1C LTR MaLR 3 374 -1 312 276 70 65 chr3 26668551 26668646 -200855932 - L1ME LINE L1 -5973 97 4 6822 53 23 5 chr3 26669154 26670431 -200854147 - L1PA6 LINE L1 -3 6151 4839 1697 140 81 0 chr3 26670440 26670725 -200853853 - MER2 DNA MER2_type -37 308 1 425 333 102 20 chr3 26670928 26671388 -200853190 + L1ME LINE L1 5318 5815 -347 1143 286 67 30 chr3 26671542 26672241 -200852337 + L1M4 LINE L1 4650 5374 -772 22 0 0 0 chr3 26672370 26672392 -200852186 + AT_rich Low_complexity Low_complexity 1 22 0 9120 115 21 23 chr3 26672609 26673409 -200851169 + Tigger1 DNA MER2_type 1002 1802 -616 1718 169 33 3 chr3 26673409 26673710 -200850868 - AluJo SINE Alu -2 310 1 9120 115 21 23 chr3 26673710 26674135 -200850443 + Tigger1 DNA MER2_type 1802 2226 -192 2292 97 10 0 chr3 26674135 26674445 -200850133 - AluSp SINE Alu 0 313 1 9120 115 21 23 chr3 26674445 26674638 -200849940 + Tigger1 DNA MER2_type 2226 2418 0 285 98 0 0 chr3 26674785 26674826 -200849752 + (CA)n Simple_repeat Simple_repeat 2 42 0 368 313 119 51 chr3 26675160 26675772 -200848806 + L2 LINE L2 2636 3312 -1 207 295 77 13 chr3 26675996 26676074 -200848504 + L3b LINE CR1 1296 1378 -205 22 35 0 0 chr3 26676504 26676533 -200848045 + AT_rich Low_complexity Low_complexity 1 29 0 1106 110 0 0 chr3 26676923 26677078 -200847500 - AluSg/x SINE Alu -11 301 147 28 29 0 0 chr3 26677537 26677572 -200847006 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr3 26678325 26678362 -200846216 + AT_rich Low_complexity Low_complexity 1 37 0 365 300 57 76 chr3 26679036 26679246 -200845332 - MIR SINE MIR -29 233 28 362 177 25 13 chr3 26679420 26679499 -200845079 + L1ME3A LINE L1 6086 6165 -5 468 0 0 0 chr3 26679680 26679732 -200844846 + (TG)n Simple_repeat Simple_repeat 2 53 0 196 274 0 0 chr3 26679739 26679790 -200844788 - MIR3 SINE MIR -4 204 154 2219 109 36 20 chr3 26679806 26680164 -200844414 + THE1B LTR MaLR 1 364 0 182 369 106 19 chr3 26680423 26680583 -200843995 - MIR SINE MIR -15 247 74 21 0 0 0 chr3 26681672 26681693 -200842885 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 26683096 26683117 -200841461 + AT_rich Low_complexity Low_complexity 1 21 0 180 345 216 7 chr3 26734831 26734979 -200789599 + MIR SINE MIR 10 188 -74 279 133 0 0 chr3 26734980 26735025 -200789553 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr3 26735038 26735062 -200789516 + AT_rich Low_complexity Low_complexity 1 24 0 1648 263 107 28 chr3 26735124 26735695 -200788883 + MLT2F LTR ERVL 1 616 -47 231 146 0 0 chr3 26736004 26736045 -200788533 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chr3 26737127 26737155 -200787423 + (TA)n Simple_repeat Simple_repeat 2 29 0 3096 171 54 0 chr3 26737156 26737694 -200786884 - MER6A DNA MER2_type 0 605 39 602 171 39 8 chr3 26737958 26738087 -200786491 - L1 LINE L1 -2192 3954 3822 2634 32 3 0 chr3 26738171 26738482 -200786096 - L1PA6 LINE L1 -234 5920 5609 6240 52 4 0 chr3 26739154 26739925 -200784653 - L1PA6 LINE L1 -1 6153 5380 456 309 195 15 chr3 26739925 26740268 -200784310 - L2 LINE L2 -1518 1796 1392 3879 241 65 10 chr3 26740274 26741042 -200783536 + L1PA16 LINE L1 5351 6160 -6 225 0 0 0 chr3 26741571 26741596 -200782982 + (CA)n Simple_repeat Simple_repeat 2 26 0 1386 274 104 10 chr3 26741759 26742172 -200782406 + MLT1G LTR MaLR 135 586 -4 1450 169 44 34 chr3 26742259 26742554 -200782024 - AluJb SINE Alu -14 298 1 512 210 178 25 chr3 26743369 26743650 -200780928 + L1MC5 LINE L1 7538 7861 -100 278 280 72 0 chr3 26743941 26744066 -200780512 + L1ME4a LINE L1 5926 6059 -62 1749 237 133 18 chr3 26745071 26745560 -200779018 + MLT1E LTR MaLR 32 576 -17 533 322 7 56 chr3 26745971 26746230 -200778348 - MIR SINE MIR -6 256 6 454 225 248 0 chr3 26746517 26746646 -200777932 + MER5A DNA MER1_type 28 188 -1 30 0 0 0 chr3 26746705 26746735 -200777843 + AT_rich Low_complexity Low_complexity 1 30 0 722 238 62 66 chr3 26747704 26748100 -200776478 - MLT2B3 LTR ERVL -169 322 71 201 299 75 15 chr3 26748169 26748236 -200776342 - L2 LINE L2 -167 3105 3035 207 258 194 0 chr3 26748296 26748389 -200776189 - MIR SINE MIR -60 202 92 329 260 115 0 chr3 26749355 26749451 -200775127 + MIR SINE MIR 57 163 -99 201 250 28 14 chr3 26749440 26749512 -200775066 - MIR SINE MIR -2 260 188 * 487 311 49 0 chr3 26749704 26749868 -200774710 + MIR SINE MIR 91 262 0 222 37 0 0 chr3 26750929 26750956 -200773622 + (CAGGC)n Simple_repeat Simple_repeat 4 30 0 192 179 0 0 chr3 26751085 26751124 -200773454 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 2473 53 0 3 chr3 26751168 26751470 -200773108 - AluY SINE Alu -10 301 1 2066 149 15 27 chr3 26751894 26752296 -200772282 - L1MB8 LINE L1 0 6178 5782 286 154 0 0 chr3 26752297 26752342 -200772236 - L1MB8 LINE L1 -668 5691 5644 2415 121 44 37 chr3 26752342 26752773 -200771805 - MER57B LTR ERV1 0 434 1 1489 87 121 4 chr3 26752781 26753012 -200771566 - MER57B-int LTR ERV1 -8 7529 7272 726 138 24 0 chr3 26753012 26753135 -200771443 - LTR54B LTR ERV1 -370 128 3 16082 171 59 52 chr3 26753135 26757307 -200767271 - MER57B-int LTR ERV1 -487 7329 3129 3219 144 53 13 chr3 26757345 26757895 -200766683 - MER57B-int LTR ERV1 -5087 859 288 * 3537 157 43 15 chr3 26757889 26758546 -200766032 - MER57B-int LTR ERV1 -6862 675 1 2667 123 9 2 chr3 26758558 26758980 -200765598 - MER57B LTR ERV1 -9 425 1 692 152 33 2 chr3 26758980 26759113 -200765465 - L1MB8 LINE L1 -524 5650 5516 2190 106 0 3 chr3 26759224 26759516 -200765062 + AluSc SINE Alu 1 291 -18 337 343 28 33 chr3 26759736 26759949 -200764629 + L2 LINE L2 2812 3023 -249 232 284 125 0 chr3 26760092 26760180 -200764398 - MIR3 SINE MIR -23 185 87 504 93 0 0 chr3 26760596 26760671 -200763907 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 744 177 20 41 chr3 26760680 26760827 -200763751 - AluJb SINE Alu -35 277 134 202 235 39 0 chr3 26761477 26761528 -200763050 - L2 LINE L2 -20 3293 3241 1460 323 116 8 chr3 26761642 26762411 -200762167 - L2 LINE L2 -344 2970 2119 389 336 7 15 chr3 26762762 26762899 -200761679 - MIR SINE MIR -6 256 121 289 256 60 98 chr3 26763228 26763361 -200761217 - L2 LINE L2 0 3272 3145 198 264 97 14 chr3 26763402 26763474 -200761104 - L2 LINE L2 0 3313 3236 345 78 0 68 chr3 26763477 26763580 -200760998 + (TTA)n Simple_repeat Simple_repeat 3 98 0 2411 41 3 3 chr3 26764331 26764626 -200759952 - AluY SINE Alu -16 295 1 407 171 21 7 chr3 26764695 26764835 -200759743 + (TA)n Simple_repeat Simple_repeat 1 142 0 2214 88 18 0 chr3 26764835 26765119 -200759459 - AluSq SINE Alu -24 289 1 510 257 69 30 chr3 26765468 26765670 -200758908 - MER63A DNA MER1_type 0 210 1 287 225 45 0 chr3 26765945 26766034 -200758544 - HERVL40 LTR ERVL -490 2547 2455 712 239 90 106 chr3 26766197 26766498 -200758080 - HERVL40 LTR ERVL -695 4659 2047 418 218 7 106 chr3 26766500 26766585 -200757993 + HERVL40 LTR ERVL 4421 4488 -1042 2113 118 38 0 chr3 26766585 26766873 -200757705 + AluSx SINE Alu 1 299 -13 418 218 7 106 chr3 26766873 26766929 -200757649 + HERVL40 LTR ERVL 4488 4548 -982 336 24 0 0 chr3 26766929 26766970 -200757608 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 848 191 0 7 chr3 26766970 26767117 -200757461 - FRAM SINE Alu -30 146 1 5974 237 64 20 chr3 26767134 26768470 -200756108 - HERVL40 LTR ERVL -1162 4368 2935 1608 169 48 7 chr3 26768470 26768742 -200755836 + AluJo SINE Alu 1 283 -29 5974 237 64 20 chr3 26768742 26769175 -200755403 - HERVL40 LTR ERVL -2595 2935 2522 348 222 51 68 chr3 26769328 26769445 -200755133 - HERVL40 LTR ERVL -4103 1427 1313 1577 91 10 0 chr3 26769824 26770033 -200754545 - AluSp SINE Alu -16 297 87 324 70 0 0 chr3 26770033 26770076 -200754502 - AluSp SINE Alu -259 43 1 1088 253 16 30 chr3 26770105 26770409 -200754169 - HERVL40 LTR ERVL -4664 866 567 1001 246 55 80 chr3 26770460 26770900 -200753678 - HERVL40 LTR ERVL -4960 570 142 37 0 0 0 chr3 26771407 26771444 -200753134 + AT_rich Low_complexity Low_complexity 1 37 0 720 161 0 73 chr3 26771444 26771581 -200752997 - FLAM_C SINE Alu -16 127 1 23 54 0 0 chr3 26771645 26771682 -200752896 + AT_rich Low_complexity Low_complexity 1 37 0 1209 126 117 0 chr3 26772070 26772276 -200752302 - MER30 DNA MER1_type 0 230 1 246 156 0 0 chr3 26772302 26772347 -200752231 + (TA)n Simple_repeat Simple_repeat 2 46 0 2035 132 7 13 chr3 26772417 26772727 -200751851 - AluSx SINE Alu -4 308 1 1072 90 0 7 chr3 26773122 26773266 -200751312 - AluJo/FRAM SINE Alu -3 309 167 581 163 10 0 chr3 26773266 26773364 -200751214 - AluJ/FLAM SINE Alu -213 99 1 2298 107 0 0 chr3 26774588 26774886 -200749692 - AluSq SINE Alu -15 298 1 22 0 0 0 chr3 26774890 26774912 -200749666 + AT_rich Low_complexity Low_complexity 1 22 0 2680 152 29 0 chr3 26775821 26776275 -200748303 - MLT1C LTR MaLR 0 467 1 766 173 155 47 chr3 26776455 26776525 -200748053 - MER33 DNA MER1_type -2263 322 261 2166 146 0 0 chr3 26776525 26776834 -200747744 + AluJo SINE Alu 1 309 -3 766 173 155 47 chr3 26776834 26777041 -200747537 - MER33 DNA MER1_type -2324 261 15 453 19 0 0 chr3 26777753 26777807 -200746771 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 2078 126 0 7 chr3 26779272 26779597 -200744981 + AluSx SINE Alu 1 323 0 234 239 0 0 chr3 26779858 26779904 -200744674 + (CA)n Simple_repeat Simple_repeat 2 47 0 2134 99 28 0 chr3 26780661 26780944 -200743634 - AluSg SINE Alu -16 294 4 2001 126 17 3 chr3 26782399 26782692 -200741886 - AluSx SINE Alu -15 297 1 3435 53 47 53 chr3 26783183 26783711 -200740867 + LTR17 LTR ERV1 256 780 0 25295 84 42 48 chr3 26783711 26788027 -200736551 + HERV17 LTR ERV1 1 4286 -4340 459 227 94 35 chr3 26788101 26788304 -200736274 - L1M4 LINE L1 -1538 4608 4394 3329 226 112 13 chr3 26788343 26789737 -200734841 - L1ME1 LINE L1 -6 6160 4631 2525 62 0 3 chr3 26789741 26790049 -200734529 + AluY SINE Alu 1 307 -4 10466 24 8 0 chr3 26790213 26791945 -200732633 - L1PA4 LINE L1 -323 5832 4091 757 148 0 0 chr3 26791946 26792068 -200732510 + L1 LINE L1 4086 4207 -1939 612 281 68 29 chr3 26792110 26792494 -200732084 + L1MEc LINE L1 2093 2491 -3905 348 258 0 0 chr3 26792687 26792776 -200731802 - L1MC/D LINE L1 -583 5776 5688 22 35 0 0 chr3 26793161 26793190 -200731388 + AT_rich Low_complexity Low_complexity 1 29 0 1428 173 69 36 chr3 26793203 26793480 -200731098 - AluJo SINE Alu -21 291 6 546 287 99 18 chr3 26793750 26794133 -200730445 + L1PA12 LINE L1 2 415 -7166 358 297 150 60 chr3 26794222 26794555 -200730023 + L1M2 LINE L1 469 831 -6018 239 321 57 30 chr3 26794622 26794887 -200729691 + L1M2 LINE L1 796 1067 -5782 573 191 128 0 chr3 26795106 26795247 -200729331 + L1PA16 LINE L1 6005 6163 -3 * 865 289 142 4 chr3 26795243 26795700 -200728878 + L1MC4a LINE L1 5474 5993 -1815 21 0 0 0 chr3 26795791 26795812 -200728766 + AT_rich Low_complexity Low_complexity 1 21 0 1462 311 180 22 chr3 26795818 26796945 -200727633 + L2 LINE L2 1782 3084 -229 338 381 12 12 chr3 26797346 26797506 -200727072 - MIR3 SINE MIR -20 188 29 219 36 0 0 chr3 26799950 26799978 -200724600 + (CTG)n Simple_repeat Simple_repeat 1 28 0 981 199 10 0 chr3 26800880 26801081 -200723497 - MER3 DNA MER1_type -1 208 6 247 286 174 10 chr3 26801467 26801565 -200723013 + L2 LINE L2 3180 3293 -20 221 306 94 12 chr3 26801591 26801676 -200722902 - MIR SINE MIR -71 191 100 1748 188 0 0 chr3 26801701 26801983 -200722595 - AluJo SINE Alu -30 282 1 342 242 117 37 chr3 26802044 26802304 -200722274 - MLT1H LTR MaLR -249 300 1 4771 98 8 22 chr3 26802369 26803012 -200721566 - MER51A LTR ERV1 0 634 1 1589 248 75 100 chr3 26804288 26804890 -200719688 - MLT1G LTR MaLR 0 590 9 524 289 34 0 chr3 26805253 26805461 -200719117 + L1M4 LINE L1 4408 4622 -1524 363 218 0 170 chr3 26805828 26806023 -200718555 - L2 LINE L2 0 3313 3161 1591 145 76 0 chr3 26806023 26806313 -200718265 - L1MA8 LINE L1 -4 6287 5976 363 218 0 170 chr3 26806313 26806346 -200718232 - L2 LINE L2 -152 3161 3124 388 226 96 17 chr3 26807002 26807117 -200717461 - MLT2E LTR ERVL -503 125 1 190 246 0 77 chr3 26807446 26807511 -200717067 - L2 LINE L2 -10 3262 3203 1441 276 32 29 chr3 26807515 26807925 -200716653 - LTR16A LTR ERVL 0 450 40 922 167 75 6 chr3 26808428 26808602 -200715976 - MER5A DNA MER1_type 0 189 4 1313 204 0 9 chr3 26808614 26808839 -200715739 - MER58A DNA MER1_type -1 223 1 217 271 167 0 chr3 26809792 26809888 -200714690 - L2 LINE L2 -4 3309 3198 356 290 0 28 chr3 26810190 26810297 -200714281 - MER5A DNA MER1_type -85 104 1 689 206 144 6 chr3 26810491 26810651 -200713927 - MER5A DNA MER1_type 0 189 8 2029 148 0 0 chr3 26812005 26812303 -200712275 + AluJb SINE Alu 1 298 -14 823 201 0 14 chr3 26812347 26812491 -200712087 + FLAM_C SINE Alu 2 143 0 392 288 90 61 chr3 26812555 26812833 -200711745 + L1ME LINE L1 5379 5664 -457 2057 134 7 0 chr3 26812863 26813155 -200711423 + AluSx SINE Alu 3 296 -16 21 36 0 0 chr3 26813565 26813593 -200710985 + AT_rich Low_complexity Low_complexity 1 28 0 2346 87 3 3 chr3 26813881 26814179 -200710399 + AluSq SINE Alu 1 298 -15 2263 109 3 0 chr3 26814467 26814769 -200709809 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr3 26815046 26815076 -200709502 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr3 26815130 26815164 -200709414 + AT_rich Low_complexity Low_complexity 1 34 0 767 256 33 47 chr3 26815377 26815592 -200708986 + MIR SINE MIR 13 224 -38 1134 234 117 81 chr3 26815783 26815939 -200708639 - MLT1D LTR MaLR 0 505 356 861 154 0 22 chr3 26815939 26816075 -200708503 - FLAM_C SINE Alu 0 133 1 1134 234 117 81 chr3 26816075 26816387 -200708191 - MLT1D LTR MaLR -149 356 20 309 212 24 24 chr3 26816425 26816510 -200708068 - Charlie8 DNA MER1_type -2248 169 85 741 222 34 28 chr3 26816663 26816839 -200707739 + AluJo SINE Alu 124 300 -12 4818 172 44 28 chr3 26817554 26817608 -200706970 + L1 LINE L1 4227 4279 -1867 2019 135 0 26 chr3 26817608 26817912 -200706666 + AluSx SINE Alu 1 296 -16 4818 172 44 28 chr3 26817912 26818905 -200705673 + L1 LINE L1 4279 5291 -855 301 262 167 79 chr3 26819351 26819668 -200704910 + L1ME LINE L1 5384 5728 -393 2193 99 3 0 chr3 26819820 26820232 -200704346 + AluSq SINE Alu 1 413 0 25 31 0 0 chr3 26820397 26820429 -200704149 + AT_rich Low_complexity Low_complexity 1 32 0 17661 152 19 81 chr3 26820525 26822849 -200701729 + L1 LINE L1 12 2477 -5088 2107 136 13 0 chr3 26822849 26823157 -200701421 + AluSx SINE Alu 1 312 0 17661 152 19 81 chr3 26823157 26823399 -200701179 + L1 LINE L1 2477 2732 -4833 783 168 0 0 chr3 26823399 26823506 -200701072 + FLAM_C SINE Alu 2 108 -35 17661 152 19 81 chr3 26823506 26824412 -200700166 + L1 LINE L1 2732 3371 -4194 4025 244 58 45 chr3 26824409 26825531 -200699047 + L1 LINE L1 5219 6355 -1210 * 1424 151 78 20 chr3 26825534 26825779 -200698799 - AluJo SINE Alu -51 261 3 191 35 0 35 chr3 26826088 26826117 -200698461 + (TAA)n Simple_repeat Simple_repeat 1 28 0 408 289 181 10 chr3 26826121 26826325 -200698253 - MIR SINE MIR -21 241 3 1667 186 10 7 chr3 26826360 26826651 -200697927 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr3 26826651 26826674 -200697904 + AT_rich Low_complexity Low_complexity 1 23 0 979 120 0 0 chr3 26827190 26827323 -200697255 + AluSq/x SINE Alu 1 133 -179 1448 117 0 28 chr3 26827327 26827540 -200697038 + AluSg/x SINE Alu 83 289 -21 2195 94 3 10 chr3 26827785 26828075 -200696503 + AluSx SINE Alu 1 290 -22 183 42 0 0 chr3 26828075 26828099 -200696479 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 756 178 16 8 chr3 26828642 26828771 -200695807 + AluJb SINE Alu 2 131 -181 23 33 0 0 chr3 26828771 26828801 -200695777 + AT_rich Low_complexity Low_complexity 1 30 0 2073 122 3 16 chr3 26830246 26830558 -200694020 + AluSx SINE Alu 2 309 -3 2053 117 3 31 chr3 26830741 26831058 -200693520 - AluSq SINE Alu -5 308 1 678 242 0 0 chr3 26832488 26832620 -200691958 + FRAM SINE Alu 38 169 -7 2274 113 0 0 chr3 26833435 26833735 -200690843 + AluSq SINE Alu 2 301 -12 478 240 0 0 chr3 26833738 26833834 -200690744 + MER34 LTR ERV1 1 96 -446 281 295 126 63 chr3 26833844 26834146 -200690432 + HAL1 LINE L1 305 625 -1882 753 233 127 21 chr3 26834189 26834425 -200690153 + MIR SINE MIR 2 262 0 420 292 135 65 chr3 26834434 26834536 -200690042 + HAL1 LINE L1 659 752 -1755 2088 116 7 7 chr3 26834536 26834838 -200689740 + AluSq SINE Alu 1 302 -11 420 292 135 65 chr3 26834838 26834907 -200689671 + HAL1 LINE L1 752 815 -1692 1517 179 0 56 chr3 26834907 26835226 -200689352 - AluJb SINE Alu -11 301 1 420 292 135 65 chr3 26835226 26835467 -200689111 + HAL1 LINE L1 815 1101 -1406 793 156 16 8 chr3 26835505 26835633 -200688945 + AluJo SINE Alu 6 134 -178 1911 219 60 99 chr3 26835639 26835767 -200688811 - L1MC4 LINE L1 -826 7216 7084 2286 98 0 0 chr3 26835767 26836062 -200688516 - AluSg SINE Alu -15 295 1 1911 219 60 99 chr3 26836062 26836352 -200688226 - L1MC4 LINE L1 -958 7084 6784 657 37 0 0 chr3 26836352 26836434 -200688144 + L1PA3 LINE L1 6073 6154 -1 1911 219 60 99 chr3 26836434 26836514 -200688064 - L1MC4 LINE L1 -1258 6784 6702 2370 67 10 0 chr3 26836514 26836811 -200687767 + AluY SINE Alu 1 300 -11 1911 219 60 99 chr3 26836811 26837095 -200687483 - L1MC4 LINE L1 -1340 6702 6463 2425 61 10 0 chr3 26837914 26838208 -200686370 - AluY SINE Alu -14 297 1 2315 75 14 0 chr3 26838211 26838506 -200686072 - AluSp SINE Alu -12 301 3 523 214 0 0 chr3 26838508 26838597 -200685981 - AluJb SINE Alu -16 296 208 213 159 65 47 chr3 26839447 26839554 -200685024 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 434 307 171 0 chr3 26839569 26839849 -200684729 + L1M4 LINE L1 3603 3930 -2216 2023 120 24 0 chr3 26840002 26840293 -200684285 - AluSx SINE Alu -14 298 1 979 146 0 0 chr3 26840756 26840886 -200683692 - FLAM_C SINE Alu -2 131 2 2183 102 3 16 chr3 26840974 26841279 -200683299 + AluSg SINE Alu 4 304 -6 549 303 83 21 chr3 26841431 26841672 -200682906 + MIR SINE MIR 3 258 -4 26 64 0 0 chr3 26841774 26841821 -200682757 + AT_rich Low_complexity Low_complexity 1 47 0 1518 184 23 40 chr3 26842154 26842398 -200682180 - AluJo SINE Alu -13 299 59 1747 131 6 92 chr3 26842398 26842733 -200681845 + AluSq SINE Alu 2 307 -6 1518 184 23 40 chr3 26842733 26842792 -200681786 - AluJo SINE Alu -253 59 1 358 275 64 9 chr3 26843301 26843410 -200681168 - L2 LINE L2 -4 3309 3195 211 316 74 42 chr3 26844275 26844370 -200680208 + L2 LINE L2 3137 3234 -38 621 176 33 4 chr3 26845846 26846098 -200678480 + CT-rich Low_complexity Low_complexity 1 259 0 2223 95 7 0 chr3 26846461 26846755 -200677823 - AluSx SINE Alu -16 296 1 2377 88 3 0 chr3 26846916 26847221 -200677357 + AluSc SINE Alu 1 306 -3 846 207 62 2 chr3 26847308 26847535 -200677043 + AluJb SINE Alu 3 294 -18 * 1390 179 4 4 chr3 26847534 26847768 -200676810 + AluJo SINE Alu 68 301 -11 2171 115 0 0 chr3 26847771 26848101 -200676477 + AluSq SINE Alu 1 330 0 1767 116 40 0 chr3 26848120 26848370 -200676208 + AluSx SINE Alu 41 300 -12 646 229 42 24 chr3 26849374 26849540 -200675038 + L1ME2 LINE L1 5995 6163 -1 301 228 53 18 chr3 26849654 26849768 -200674810 + L1MC4 LINE L1 7924 8041 -1 263 337 66 39 chr3 26849809 26849990 -200674588 + L2 LINE L2 2562 2747 -567 1892 134 17 0 chr3 26850094 26850386 -200674192 - AluSx SINE Alu -15 297 1 2598 51 0 6 chr3 26850551 26850864 -200673714 - AluY SINE Alu 0 311 1 286 301 59 48 chr3 26851988 26852174 -200672404 + L2 LINE L2 2716 2903 -411 204 235 20 0 chr3 26852490 26852541 -200672037 + L2 LINE L2 3261 3312 -1 191 200 0 0 chr3 26852739 26852774 -200671804 - L2 LINE L2 -2 3311 3277 2277 286 162 17 chr3 26852774 26853022 -200671556 - L2 LINE L2 -1298 2016 1806 1856 149 0 3 chr3 26853022 26853304 -200671274 + AluSx SINE Alu 1 281 -31 2277 286 162 17 chr3 26853304 26854262 -200670316 - L2 LINE L2 -1508 1806 634 228 35 0 0 chr3 26854462 26854491 -200670087 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 603 222 176 0 chr3 26856110 26856263 -200668315 - MER5A DNA MER1_type -1 188 9 3032 69 64 7 chr3 26856320 26856698 -200667880 + MLT2A1 LTR ERVL 1 407 -37 498 33 0 0 chr3 26856698 26856758 -200667820 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 3032 69 64 7 chr3 26856758 26856799 -200667779 + MLT2A1 LTR ERVL 407 444 0 11230 80 6 16 chr3 26856802 26857359 -200667219 + THE1A-int LTR MaLR 5 566 -1014 225 0 0 0 chr3 26857359 26857384 -200667194 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5136 40 2 2 chr3 26857384 26858006 -200666572 - L1PA5 LINE L1 -18 6136 5515 11230 80 6 16 chr3 26858006 26859040 -200665538 + THE1A-int LTR MaLR 564 1580 0 2613 96 6 0 chr3 26859040 26859393 -200665185 + THE1A LTR MaLR 1 355 0 779 141 147 0 chr3 26859487 26859671 -200664907 - L1MC3 LINE L1 0 7785 7575 28 0 0 0 chr3 26859673 26859701 -200664877 + AT_rich Low_complexity Low_complexity 1 28 0 278 310 87 55 chr3 26859905 26860250 -200664328 + L2 LINE L2 1250 1605 -1709 879 83 15 8 chr3 26860324 26860457 -200664121 - L1PB2 LINE L1 0 6867 6734 40552 36 21 1 chr3 26860457 26866486 -200658092 - L1PA2 LINE L1 -1 6154 1 11534 186 23 27 chr3 26866483 26866896 -200657682 - L1PB2 LINE L1 -116 6751 6338 * 7388 42 0 0 chr3 26866896 26868521 -200656057 - L1PA5 LINE L1 -4 6150 4527 11534 186 23 27 chr3 26868521 26871803 -200652775 - L1PB2 LINE L1 -529 6338 3078 23 33 0 0 chr3 26871803 26871833 -200652745 + AT_rich Low_complexity Low_complexity 1 30 0 6022 124 69 9 chr3 26871878 26873005 -200651573 - L1PB2 LINE L1 -3767 3095 1969 462 164 90 16 chr3 26873005 26873025 -200651553 - L1MC3 LINE L1 -1930 5855 5838 1972 128 31 7 chr3 26873025 26873314 -200651264 - AluSx SINE Alu -16 296 1 462 164 90 16 chr3 26873314 26873415 -200651163 - L1MC3 LINE L1 -1947 5838 1138 224 283 11 0 chr3 26873421 26873513 -200651065 + (TTATA)n Simple_repeat Simple_repeat 1 93 0 2137 150 28 2 chr3 26873514 26873913 -200650665 - L1MA5A LINE L1 -3 6294 5886 294 73 0 0 chr3 26873916 26873957 -200650621 + (ATG)n Simple_repeat Simple_repeat 2 42 0 1529 224 14 0 chr3 26873974 26874255 -200650323 - AluJo SINE Alu -27 285 1 692 111 0 34 chr3 26874284 26874401 -200650177 - L1MA5A LINE L1 -403 5894 5782 16077 111 41 19 chr3 26874431 26877555 -200647023 + L1PA7 LINE L1 751 4005 -2456 4651 83 0 3 chr3 26877556 26878171 -200646407 + L1PA7 LINE L1 5542 6154 0 * 11384 99 23 1 chr3 26878164 26880610 -200643968 + L1PA7 LINE L1 3996 6469 0 247 191 0 0 chr3 26880665 26880712 -200643866 - L1MA5A LINE L1 -529 5768 5722 * 1200 148 5 0 chr3 26880709 26880925 -200643653 - L1PA12 LINE L1 -2225 5359 5143 1269 185 24 31 chr3 26881034 26881326 -200643252 - SVA Other Other -665 721 432 10872 171 18 69 chr3 26881356 26881842 -200642736 - L1PA12 LINE L1 -2441 5143 4634 180 0 0 0 chr3 26881842 26881862 -200642716 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1010 107 0 0 chr3 26881862 26881993 -200642585 - AluSc SINE Alu -47 262 132 2301 96 7 7 chr3 26881993 26882296 -200642282 - AluSp SINE Alu -10 303 1 10872 171 18 69 chr3 26882296 26882359 -200642219 - L1PA12 LINE L1 -2948 4636 4571 520 146 12 0 chr3 26882359 26882441 -200642137 - AluSc SINE Alu -183 126 44 10872 171 18 69 chr3 26882441 26885659 -200638919 - L1PA12 LINE L1 -3013 4571 1400 281 344 65 47 chr3 26885839 26886200 -200638378 - L2 LINE L2 -247 3025 2660 12262 166 22 28 chr3 26886722 26889418 -200635160 + L1MA4 LINE L1 2628 5308 -838 1713 139 35 0 chr3 26889415 26889725 -200634853 + L1MA4 LINE L1 5789 6109 -191 * 995 117 9 61 chr3 26889784 26889896 -200634682 + L1MA4 LINE L1 6099 6196 -104 2273 115 0 0 chr3 26889896 26890192 -200634386 - AluSx SINE Alu -16 296 1 995 117 9 61 chr3 26890192 26890292 -200634286 + L1MA4 LINE L1 6196 6300 0 1694 178 0 14 chr3 26890341 26890663 -200633915 - AluJb SINE Alu 0 318 1 1243 206 76 7 chr3 26890907 26891314 -200633264 - Charlie4a DNA MER1_type -14 494 60 730 109 0 70 chr3 26891428 26891556 -200633022 + L1PA13 LINE L1 6034 6152 -11 451 229 47 41 chr3 26892184 26892354 -200632224 + MER112 DNA MER1_type 7 177 -83 369 172 39 8 chr3 26892514 26892642 -200631936 + (TA)n Simple_repeat Simple_repeat 1 132 0 2831 142 50 21 chr3 26892814 26893337 -200631241 + MER21A LTR ERV1 375 912 -19 1395 171 96 11 chr3 26893542 26893823 -200630755 - AluSx SINE Alu -7 305 1 225 232 32 21 chr3 26894081 26894176 -200630402 - L1MC5 LINE L1 -44 7917 7822 2135 99 3 3 chr3 26894176 26894468 -200630110 - AluSp SINE Alu -21 292 1 1074 213 137 15 chr3 26894752 26894877 -200629701 + L1ME3 LINE L1 5699 5807 -355 2301 97 3 0 chr3 26894877 26895175 -200629403 + AluSg SINE Alu 1 299 -11 1074 213 137 15 chr3 26895175 26895392 -200629186 + L1ME3 LINE L1 5807 6083 -79 230 191 0 0 chr3 26895537 26895579 -200628999 - 5S rRNA rRNA -79 42 1 22 0 0 0 chr3 26895616 26895638 -200628940 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr3 26896623 26896669 -200627909 + AT_rich Low_complexity Low_complexity 1 46 0 223 357 94 62 chr3 26897307 26897531 -200627047 - MIR SINE MIR -12 250 20 26 0 0 0 chr3 26897654 26897680 -200626898 + AT_rich Low_complexity Low_complexity 1 26 0 400 289 45 26 chr3 26897726 26897960 -200626618 + L1M3e LINE L1 7 1013 -6024 1978 214 26 15 chr3 26898571 26899152 -200625426 + L1M3e LINE L1 1802 2384 -4653 * 2065 141 13 107 chr3 26899150 26899496 -200625082 + L1MA9 LINE L1 5808 6090 -222 1762 158 38 0 chr3 26899496 26899787 -200624791 - AluJb SINE Alu -10 302 1 2065 141 13 107 chr3 26899787 26899964 -200624614 + L1MA9 LINE L1 6090 6282 -30 1997 238 30 5 chr3 26899979 26900538 -200624040 - L1MC4a LINE L1 -47 7761 7189 221 275 43 29 chr3 26901133 26901202 -200623376 - L2 LINE L2 -3 3269 3200 872 198 53 135 chr3 26901225 26901624 -200622954 - MLT1A2 LTR MaLR -5 369 12 2047 118 0 56 chr3 26902057 26902380 -200622198 - AluSg SINE Alu -5 305 1 1864 160 7 3 chr3 26902598 26902892 -200621686 - AluJb SINE Alu -17 295 1 526 182 35 98 chr3 26904292 26904495 -200620083 - L1MC5 LINE L1 -48 7913 7724 656 302 72 0 chr3 26904540 26904775 -200619803 - MIR SINE MIR 0 262 11 261 293 58 35 chr3 26904917 26905127 -200619451 + MIR3 SINE MIR 6 255 -7 249 235 0 0 chr3 26905645 26905696 -200618882 - L3b LINE CR1 -425 1158 1108 198 171 0 0 chr3 26906126 26906167 -200618411 + (CA)n Simple_repeat Simple_repeat 2 42 0 39 22 0 0 chr3 26906211 26906257 -200618321 + AT_rich Low_complexity Low_complexity 1 46 0 772 161 0 0 chr3 26906257 26906375 -200618203 - FLAM_C SINE Alu -15 118 1 575 243 49 25 chr3 26906689 26906896 -200617682 - MLT1H LTR MaLR 0 550 344 960 191 40 35 chr3 26907025 26907253 -200617325 - AluJb SINE Alu 0 313 85 2225 104 3 3 chr3 26907308 26907605 -200616973 - AluSg SINE Alu -13 297 1 630 240 14 1 chr3 26907606 26907755 -200616823 - MLT1H LTR MaLR -335 214 17 400 348 58 5 chr3 26907918 26908154 -200616424 + MIR SINE MIR 2 247 -15 463 138 32 81 chr3 26908213 26908336 -200616242 + MER94 DNA DNA 2 118 -16 2144 112 3 0 chr3 26908512 26908798 -200615780 + AluSx SINE Alu 11 297 -15 1664 143 38 6 chr3 26909311 26909739 -200614839 - MER61D LTR ERV1 0 501 1 342 292 43 47 chr3 26910272 26910439 -200614139 - L1MEd LINE L1 -841 1649 1483 645 244 91 35 chr3 26910439 26910636 -200613942 + MER63A DNA MER1_type 1 208 -2 342 292 43 47 chr3 26910636 26910868 -200613710 - L1MEd LINE L1 -1007 1483 1251 1540 201 3 7 chr3 26910868 26911156 -200613422 + AluJo SINE Alu 1 287 -25 342 292 43 47 chr3 26911156 26911419 -200613159 - L1MEd LINE L1 -1239 1251 919 447 306 155 18 chr3 26911605 26911824 -200612754 - MIR SINE MIR -3 259 11 412 206 64 43 chr3 26911862 26912003 -200612575 - L1ME3A LINE L1 -7 6163 6020 322 241 68 30 chr3 26912121 26912254 -200612324 - L1MEd LINE L1 -1977 4667 4530 263 167 0 0 chr3 26912282 26912324 -200612254 + MER39 LTR ERV1 1 42 -665 1301 210 41 4 chr3 26912370 26912762 -200611816 + LTR48 LTR ERV1 138 739 -48 1640 222 65 34 chr3 26912897 26913375 -200611203 - MLT1D LTR MaLR -12 493 1 750 249 34 55 chr3 26913387 26913805 -200610773 - L1MEd LINE L1 -2228 4416 4008 * 6199 177 56 16 chr3 26913804 26914599 -200609979 - L1PA16 LINE L1 0 6869 6108 2017 135 3 3 chr3 26914599 26914902 -200609676 - AluSx SINE Alu -9 303 1 6199 177 56 16 chr3 26914902 26916558 -200608020 - L1PA16 LINE L1 -761 6108 4342 6589 176 9 40 chr3 26916560 26918566 -200606012 - L1PA16 LINE L1 -5009 1840 5 808 272 80 23 chr3 26918566 26919108 -200605470 - L1M4 LINE L1 -2623 3523 2933 1910 123 50 41 chr3 26919108 26919448 -200605130 + MER61A LTR ERV1 1 343 0 808 272 80 23 chr3 26919448 26919589 -200604989 - L1M4 LINE L1 -3213 2933 2801 524 276 99 0 chr3 26919716 26919868 -200604710 - MLT1G1 LTR MaLR 0 595 429 2979 223 90 22 chr3 26919881 26920538 -200604040 - L1MEd LINE L1 -2735 3909 3299 1645 212 21 16 chr3 26920538 26920910 -200603668 - MLT1A2 LTR MaLR 0 374 1 2979 223 90 22 chr3 26920910 26921557 -200603021 - L1MEd LINE L1 -3345 3299 2560 25 31 0 0 chr3 26921721 26921753 -200602825 + AT_rich Low_complexity Low_complexity 1 32 0 1450 169 42 0 chr3 26921763 26922025 -200602553 + AluJb SINE Alu 37 308 0 210 209 45 15 chr3 26922029 26922096 -200602482 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 335 203 169 45 chr3 26922120 26922344 -200602234 - L1MEd LINE L1 -4533 2173 1922 497 221 104 59 chr3 26922414 26922703 -200601875 - L1MC5 LINE L1 -48 7913 7612 745 160 6 6 chr3 26922895 26923064 -200601514 + CT-rich Low_complexity Low_complexity 4 172 0 868 221 172 48 chr3 26923066 26923646 -200600932 - L1MC5 LINE L1 -470 7491 6840 320 298 53 0 chr3 26923646 26923760 -200600818 - L1MC4a LINE L1 -1643 6165 6046 1122 262 125 5 chr3 26923859 26924283 -200600295 - L1MC4a LINE L1 -1871 5937 5463 33 0 0 0 chr3 26924287 26924320 -200600258 + AT_rich Low_complexity Low_complexity 1 33 0 826 127 0 0 chr3 26924320 26924438 -200600140 - FLAM_C SINE Alu -15 118 1 514 278 116 20 chr3 26924473 26924946 -200599632 - L1MEd LINE L1 -4831 1772 1254 1571 203 0 17 chr3 26926116 26926412 -200598166 + AluJo SINE Alu 1 291 -21 251 314 160 26 chr3 26926870 26927064 -200597514 - MIR SINE MIR -3 259 40 202 390 89 12 chr3 26927143 26927312 -200597266 + L2 LINE L2 3062 3243 -29 309 230 22 19 chr3 26928189 26928298 -200596280 - MLT1I LTR MaLR -271 138 68 26 0 0 0 chr3 26928593 26928619 -200595959 + AT_rich Low_complexity Low_complexity 1 26 0 5200 132 32 20 chr3 26928619 26929524 -200595054 - L1MA4 LINE L1 -11 6289 5370 1629 169 16 36 chr3 26929524 26929831 -200594747 - AluJb SINE Alu -11 301 1 5200 132 32 20 chr3 26929831 26929889 -200594689 - L1MA4 LINE L1 -930 5370 5314 499 150 0 0 chr3 26930287 26930367 -200594211 + L1MC1 LINE L1 6246 6325 -8 583 268 153 0 chr3 26930613 26930770 -200593808 + MER5A DNA MER1_type 9 189 0 2905 234 47 15 chr3 26930965 26931913 -200592665 + L1ME1 LINE L1 5191 6162 -4 186 133 0 0 chr3 26932073 26932103 -200592475 + (A)n Simple_repeat Simple_repeat 1 30 0 7580 35 3 2 chr3 26932558 26933550 -200591028 - L1P LINE L1 -2364 3782 2790 755 54 0 0 chr3 26933550 26933638 -200590940 + L1PA5 LINE L1 6055 6146 -8 688 149 0 57 chr3 26933707 26933727 -200590851 - L1MA3 LINE L1 0 6305 6285 2671 96 6 0 chr3 26933727 26934080 -200590498 - THE1A LTR MaLR 0 355 1 11308 93 13 11 chr3 26934080 26935217 -200589361 - THE1A-int LTR MaLR 0 1580 437 2282 88 0 0 chr3 26935217 26935564 -200589014 - AluY SINE Alu 0 347 1 11308 93 13 11 chr3 26935564 26936002 -200588576 - THE1A-int LTR MaLR -1143 437 1 2675 96 3 0 chr3 26936002 26936356 -200588222 - THE1A LTR MaLR 0 355 1 688 149 0 57 chr3 26936356 26936474 -200588104 - L1MA3 LINE L1 -17 6288 6173 21 36 0 0 chr3 26937097 26937125 -200587453 + AT_rich Low_complexity Low_complexity 1 28 0 2148 125 16 0 chr3 26937270 26937574 -200587004 - AluSq SINE Alu -4 309 1 2169 267 46 30 chr3 26938489 26939361 -200585217 + L1PBa LINE L1 177 1062 -5801 580 103 11 0 chr3 26939386 26939473 -200585105 + MSTA LTR MaLR 6 93 -335 687 138 9 0 chr3 26939473 26939582 -200584996 + L1PB3 LINE L1 6044 6153 -1 848 204 240 11 chr3 26939737 26940012 -200584566 + MER58B DNA MER1_type 1 338 -3 16420 40 1 1 chr3 26940635 26943403 -200581175 - L1PA4 LINE L1 -2 6153 3382 653 247 19 39 chr3 26945180 26945439 -200579139 + L1MC/D LINE L1 5255 5508 -2300 860 187 23 6 chr3 26946141 26946312 -200578266 - MER58A DNA MER1_type 0 224 51 236 324 28 0 chr3 26946333 26946404 -200578174 - MER58A DNA MER1_type -34 73 1 571 256 12 12 chr3 26946873 26947033 -200577545 - MER69A DNA AcHobo -15 162 3 230 341 155 31 chr3 26947063 26947477 -200577101 - L2 LINE L2 -697 2617 2153 21 57 0 0 chr3 26947684 26947719 -200576859 + AT_rich Low_complexity Low_complexity 1 35 0 275 309 57 0 chr3 26948462 26948585 -200575993 + L2 LINE L2 2148 2277 -1037 2412 136 47 2 chr3 26948690 26949096 -200575482 - MSTA LTR MaLR -2 426 3 446 246 35 9 chr3 26949348 26949462 -200575116 - MIR SINE MIR -54 208 92 567 200 179 7 chr3 26949752 26949892 -200574686 - MER5A DNA MER1_type 0 189 26 520 356 46 9 chr3 26950491 26950710 -200573868 + MIR SINE MIR 35 261 -1 214 328 86 0 chr3 26950796 26950854 -200573724 - L2 LINE L2 -43 3270 3208 24 0 0 0 chr3 26951347 26951371 -200573207 + AT_rich Low_complexity Low_complexity 1 24 0 1263 181 13 0 chr3 26951471 26951703 -200572875 + AluJo SINE Alu 1 235 -77 189 132 0 0 chr3 26951764 26951802 -200572776 + (T)n Simple_repeat Simple_repeat 1 38 0 21 71 0 0 chr3 26951878 26951920 -200572658 + AT_rich Low_complexity Low_complexity 1 42 0 290 366 9 11 chr3 26952497 26952607 -200571971 + MIR SINE MIR 6 116 -92 489 348 114 4 chr3 26952690 26952917 -200571661 + MIR SINE MIR 1 252 -10 322 337 84 42 chr3 26952944 26953276 -200571302 + L2 LINE L2 1978 2323 -991 499 220 40 10 chr3 26953362 26953488 -200571090 + MLT1H LTR MaLR 98 212 -197 555 373 79 41 chr3 26953769 26954693 -200569885 + L2 LINE L2 2316 3272 0 487 346 91 34 chr3 26955702 26956052 -200568526 + LTR16C LTR ERVL 120 489 -2 195 372 48 48 chr3 26956555 26956700 -200567878 + L2 LINE L2 3118 3262 -10 388 283 63 44 chr3 26957211 26957318 -200567260 + MIR SINE MIR 46 158 -104 1387 214 90 45 chr3 26957318 26957697 -200566881 + MSTD LTR MaLR 1 396 0 388 283 63 44 chr3 26957697 26957748 -200566830 + MIR SINE MIR 158 207 -55 2086 148 3 0 chr3 26958330 26958640 -200565938 - AluSx SINE Alu -1 311 1 979 89 34 27 chr3 26959494 26959640 -200564938 + L1PA11 LINE L1 6027 6173 -1 3424 64 0 11 chr3 26959744 26960195 -200564383 + L1PA7 LINE L1 5709 6154 0 270 284 101 47 chr3 26960198 26960367 -200564211 - MER5B DNA MER1_type 0 178 1 673 233 94 0 chr3 26960439 26960598 -200563980 - MER5B DNA MER1_type 0 178 5 234 252 155 39 chr3 26960786 26960889 -200563689 - L2 LINE L2 0 3313 3199 1981 140 27 0 chr3 26962597 26962890 -200561688 + AluSx SINE Alu 1 301 -11 3384 111 148 124 chr3 26963524 26964896 -200559682 - pTR5 LTR ERV1 0 2606 1524 985 232 80 49 chr3 26965153 26965602 -200558976 + MER4C LTR ERV1 1 463 -2 408 316 90 19 chr3 26967082 26967294 -200557284 - MIR SINE MIR -4 258 32 201 239 0 0 chr3 26967676 26967722 -200556856 - L2 LINE L2 -6 3307 3262 300 276 0 13 chr3 26967886 26967962 -200556616 + (TGAA)n Simple_repeat Simple_repeat 3 77 0 234 306 139 0 chr3 26968746 26968854 -200555724 + MIR SINE MIR 84 206 -56 7478 181 44 16 chr3 26969035 26969944 -200554634 - L1MB1 LINE L1 -1 5991 5109 2006 189 53 19 chr3 26969944 26970356 -200554222 - MSTB LTR MaLR 0 426 1 7478 181 44 16 chr3 26970356 26971239 -200553339 - L1MB1 LINE L1 -883 5109 4253 2017 105 11 0 chr3 26971239 26971550 -200553028 + AluY SINE Alu 1 314 0 7478 181 44 16 chr3 26971550 26972373 -200552205 - L1MB1 LINE L1 -1739 4253 3295 12984 173 52 27 chr3 26972384 26974034 -200550544 - L1PB1 LINE L1 0 6867 5261 2153 116 14 0 chr3 26974034 26974327 -200550251 - AluSx SINE Alu -15 297 1 12984 173 52 27 chr3 26974327 26979360 -200545218 - L1PB1 LINE L1 -1606 5261 6 4050 71 13 4 chr3 26979422 26979960 -200544618 + L1PA6 LINE L1 5610 6152 -2 1264 223 86 18 chr3 26979966 26980512 -200544066 - L1MB1 LINE L1 -2696 3274 2692 1028 166 43 0 chr3 26980512 26980675 -200543903 + AluSg/x SINE Alu 134 303 -9 2074 266 80 35 chr3 26980676 26983088 -200541490 - L1MB1 LINE L1 -3270 2700 2 553 199 59 128 chr3 26983612 26983772 -200540806 + L1MC5 LINE L1 7289 7458 -503 2346 126 25 3 chr3 26983772 26984128 -200540450 + THE1B LTR MaLR 1 364 0 553 199 59 128 chr3 26984128 26984359 -200540219 + L1MC5 LINE L1 7458 7653 -308 32984 100 11 27 chr3 26984370 26990614 -200533964 + L1PA7 LINE L1 12 6152 -2 186 118 0 0 chr3 26991455 26991489 -200533089 + (CATA)n Simple_repeat Simple_repeat 3 36 0 24 32 0 0 chr3 26991770 26991801 -200532777 + AT_rich Low_complexity Low_complexity 1 31 0 1794 185 11 0 chr3 26991801 26992088 -200532490 - AluJb SINE Alu -22 290 1 1449 231 3 6 chr3 26993309 26993629 -200530949 + MLT1A2 LTR MaLR 56 374 0 587 128 55 0 chr3 26993629 26993738 -200530840 + MLT1A2-int LTR MaLR 1 115 -1256 * 956 173 35 0 chr3 26993728 26993925 -200530653 + MLT1A2-int LTR MaLR 259 462 -909 2437 150 46 17 chr3 26993925 26994339 -200530239 - MSTB LTR MaLR 0 426 1 2833 155 10 15 chr3 26994355 26995085 -200529493 - L1M1 LINE L1 -743 6822 6182 3850 169 42 44 chr3 26995118 26995909 -200528669 + MER52A LTR ERV1 967 1755 0 1806 188 3 0 chr3 26995910 26996262 -200528316 - L1M1 LINE L1 -2012 5553 5201 14215 151 106 76 chr3 26996274 26999553 -200525025 - L1M1 LINE L1 -4183 3382 8 374 285 95 92 chr3 26999761 27000172 -200524406 - MLT1H LTR MaLR -2 547 136 300 212 0 15 chr3 27000881 27000947 -200523631 - L1MC4 LINE L1 -1364 6678 6614 182 37 37 0 chr3 27000955 27000982 -200523596 + (TG)n Simple_repeat Simple_repeat 2 29 0 274 78 20 20 chr3 27001039 27001090 -200523488 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4575 107 29 21 chr3 27001515 27002269 -200522309 - L1PA16 LINE L1 0 6166 5407 2758 206 1 19 chr3 27002291 27002388 -200522190 - L1 LINE L1 -1089 5643 5546 1768 164 40 32 chr3 27002388 27002760 -200521818 - THE1C LTR MaLR 0 375 1 2758 206 1 19 chr3 27002760 27003340 -200521238 - L1 LINE L1 -1186 5546 4978 215 359 111 17 chr3 27005265 27005382 -200519196 + L2 LINE L2 3140 3267 -5 2189 117 0 3 chr3 27006109 27006407 -200518171 + AluSq SINE Alu 1 297 -16 885 143 0 0 chr3 27006774 27006907 -200517671 - FLAM_C SINE Alu 0 133 1 808 246 155 93 chr3 27006924 27007160 -200517418 - HAL1 LINE L1 -1207 1300 1080 430 56 0 0 chr3 27007160 27007214 -200517364 - MADE1 DNA Mariner -26 54 1 808 246 155 93 chr3 27007214 27007550 -200517028 - HAL1 LINE L1 -1427 1080 636 1165 186 14 5 chr3 27007572 27007793 -200516785 + L1MD2 LINE L1 5666 5888 -471 290 123 68 82 chr3 27007856 27007929 -200516649 - L1MD2 LINE L1 -466 5893 5822 * 883 308 18 36 chr3 27007928 27008425 -200516153 - L1MA4A LINE L1 -378 5925 5438 2315 117 14 8 chr3 27008575 27008934 -200515644 - L1PA11 LINE L1 0 6174 5814 1539 177 87 0 chr3 27008934 27009211 -200515367 - MSTC LTR MaLR -127 301 1 3950 226 40 28 chr3 27009211 27010866 -200513712 - L1 LINE L1 -2895 3837 2153 * 6219 238 31 24 chr3 27010858 27011105 -200513473 - L1 LINE L1 -4801 1852 1608 1836 167 44 19 chr3 27011105 27011471 -200513107 + THE1C LTR MaLR 1 375 0 9508 133 10 43 chr3 27011474 27012897 -200511681 + THE1C-int LTR MaLR 4 1368 -212 1409 101 187 82 chr3 27012897 27013164 -200511414 - AluSx SINE Alu -17 295 1 9508 133 10 43 chr3 27013164 27013371 -200511207 + THE1C-int LTR MaLR 1368 1580 0 1836 137 71 14 chr3 27013371 27013722 -200510856 + THE1C LTR MaLR 1 371 -4 6219 238 31 24 chr3 27013722 27015374 -200509204 - L1 LINE L1 -5045 1608 2 398 126 10 2 chr3 27015384 27015461 -200509117 - L1M LINE L1 -835 5335 5255 6864 62 8 24 chr3 27015506 27017225 -200507353 - L1PA7 LINE L1 -3 6151 4449 2665 105 36 0 chr3 27017225 27017615 -200506963 + L1PA7 LINE L1 4051 4454 -1692 498 106 59 0 chr3 27017632 27017717 -200506861 - L1PA16 LINE L1 -9 6157 6068 2680 235 59 21 chr3 27017719 27018076 -200506502 - L1M4 LINE L1 -883 5263 4921 2631 36 3 0 chr3 27018076 27018379 -200506199 + AluY SINE Alu 1 304 -7 2680 235 59 21 chr3 27018379 27018872 -200505706 - L1M4 LINE L1 -1225 4921 4381 230 310 0 0 chr3 27018921 27018979 -200505599 + L2 LINE L2 3246 3303 -10 * 513 313 31 10 chr3 27018968 27019159 -200505419 + MIR3 SINE MIR 11 207 -1 306 340 87 20 chr3 27021039 27021189 -200503389 - MIR3 SINE MIR -7 201 42 824 293 19 64 chr3 27022413 27022516 -200502062 - LTR16A1 LTR ERVL -12 445 339 2053 132 127 18 chr3 27022516 27022902 -200501676 - MSTA LTR MaLR 0 428 1 824 293 19 64 chr3 27022902 27023157 -200501421 - LTR16A1 LTR ERVL -118 339 103 3164 164 29 5 chr3 27023157 27023713 -200500865 - LTR24B LTR ERV1 -7 569 1 571 317 85 40 chr3 27024071 27024527 -200500051 + L1ME LINE L1 5322 5745 -376 287 333 83 24 chr3 27024695 27024863 -200499715 + MIR SINE MIR 74 251 -11 298 382 115 0 chr3 27025018 27025183 -200499395 - MIR3 SINE MIR -2 206 23 1575 204 120 14 chr3 27026896 27027254 -200497324 - MSTD LTR MaLR 0 396 1 1189 219 119 53 chr3 27028096 27028456 -200496122 + MLT1D LTR MaLR 3 386 -119 10593 57 1 4 chr3 27028487 27030629 -200493949 - L1PA5 LINE L1 0 6154 4018 12126 67 3 1 chr3 27030629 27032253 -200492325 + L1PA5 LINE L1 2384 4010 -2136 682 194 0 8 chr3 27032254 27032388 -200492190 + MLT1D LTR MaLR 373 505 0 1095 178 25 0 chr3 27032609 27032806 -200491772 + MER3 DNA MER1_type 4 205 -4 335 294 67 0 chr3 27032993 27033112 -200491466 - Charlie8 DNA MER1_type -2176 241 115 390 244 55 55 chr3 27033271 27033398 -200491180 + MER91B DNA MER1_type 2 128 -62 316 250 18 107 chr3 27033416 27033528 -200491050 + MER91B DNA MER1_type 89 190 0 181 308 26 51 chr3 27033813 27033891 -200490687 + L2 LINE L2 3193 3268 -4 420 359 34 94 chr3 27035312 27035727 -200488851 + L2 LINE L2 2883 3272 0 463 165 28 92 chr3 27036540 27036649 -200487929 + MER20 DNA MER1_type 2 103 -116 1040 180 83 7 chr3 27036855 27037133 -200487445 + MER33 DNA MER1_type 26 324 0 204 351 211 18 chr3 27037235 27037349 -200487229 - L2 LINE L2 0 3272 3137 241 360 171 21 chr3 27037959 27038198 -200486380 + L2 LINE L2 3006 3280 -33 587 258 96 18 chr3 27038207 27038464 -200486114 - LTR16A1 LTR ERVL -16 441 160 249 290 0 0 chr3 27038624 27038686 -200485892 + L2 LINE L2 3250 3311 -2 9836 29 3 0 chr3 27040033 27041237 -200483341 - L1P LINE L1 -2430 3716 2509 12385 27 0 0 chr3 27041237 27043488 -200481090 + L1PA3 LINE L1 3913 6165 0 4347 227 20 12 chr3 27043764 27044664 -200479914 + L1MA1 LINE L1 19 925 -6640 * 9579 172 21 13 chr3 27044661 27047276 -200477302 + L1MA1 LINE L1 2990 5625 -1940 1764 143 5 215 chr3 27047256 27047926 -200476652 + L1MA1 LINE L1 6130 6658 -907 * 5641 128 38 5 chr3 27047949 27048821 -200475757 + THE1C-int LTR MaLR 680 1580 0 2185 133 8 39 chr3 27048821 27049206 -200475372 + THE1C LTR MaLR 1 373 -2 6178 121 40 9 chr3 27049208 27050244 -200474334 + L1MA1 LINE L1 6654 7721 0 287 307 31 51 chr3 27050290 27050583 -200473995 + HAL1 LINE L1 1382 1668 -839 1587 197 0 48 chr3 27050611 27050967 -200473611 + MER44D DNA MER2_type 1 609 0 2319 126 24 16 chr3 27051032 27051404 -200473174 + THE1C LTR MaLR 1 375 0 6788 111 253 34 chr3 27051404 27052700 -200471878 + THE1C-int LTR MaLR 1 1580 0 2484 122 8 16 chr3 27052700 27053078 -200471500 + THE1C LTR MaLR 1 375 0 269 258 0 0 chr3 27054440 27054506 -200470072 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 304 274 74 0 chr3 27055265 27055360 -200469218 - MIR SINE MIR 0 262 161 257 321 41 41 chr3 27055851 27056069 -200468509 + L3 LINE CR1 591 808 -769 326 294 103 0 chr3 27056222 27056348 -200468230 + L3 LINE CR1 890 1028 -549 327 350 75 15 chr3 27056362 27056562 -200468016 + L3 LINE CR1 1357 1568 -9 200 191 0 24 chr3 27056576 27056618 -200467960 + MIR SINE MIR 111 151 -57 4757 184 73 55 chr3 27057092 27057325 -200467253 + Charlie1a DNA MER1_type 2 229 -2532 2179 116 30 48 chr3 27057325 27057483 -200467095 + THE1B LTR MaLR 1 160 -204 2134 104 4 0 chr3 27057483 27057786 -200466792 - AluSg SINE Alu 0 308 5 2179 116 30 48 chr3 27057786 27057997 -200466581 + THE1B LTR MaLR 160 364 0 4757 184 73 55 chr3 27057997 27059191 -200465387 + Charlie1a DNA MER1_type 229 1455 0 7222 38 22 0 chr3 27060008 27060888 -200463690 - L1PA3 LINE L1 -3 6152 5254 363 302 4 146 chr3 27061080 27061218 -200463360 - MIR SINE MIR -17 245 162 2119 128 0 0 chr3 27061218 27061514 -200463064 - AluSx SINE Alu -15 297 2 363 302 4 146 chr3 27061514 27061643 -200462935 - MIR SINE MIR -100 162 16 12414 144 19 13 chr3 27061719 27063777 -200460801 + Tigger1 DNA MER2_type 15 2086 -332 4854 162 28 45 chr3 27063779 27064321 -200460257 - L1MA4 LINE L1 -15 6285 5736 1984 92 26 3 chr3 27064321 27064624 -200459954 - L1MA2 LINE L1 0 6304 5995 4854 162 28 45 chr3 27064624 27066031 -200458547 - L1MA4 LINE L1 -564 5736 4369 6755 134 7 13 chr3 27066049 27066685 -200457893 - L1MA2 LINE L1 0 6304 5666 2072 122 14 0 chr3 27066685 27066972 -200457606 - AluSc SINE Alu -18 291 1 6755 134 7 13 chr3 27066972 27067807 -200456771 - L1MA2 LINE L1 -638 5666 4839 943 345 7 29 chr3 27067918 27068370 -200456208 - L1M3a LINE L1 -5503 452 11 1506 172 181 3 chr3 27068376 27068679 -200455899 + Tigger1 DNA MER2_type 2061 2417 -1 219 69 0 0 chr3 27068707 27068736 -200455842 + (TC)n Simple_repeat Simple_repeat 2 30 0 216 188 0 0 chr3 27069147 27069195 -200455383 + (TTTAA)n Simple_repeat Simple_repeat 4 51 0 5878 181 12 10 chr3 27069232 27071373 -200453205 + L1PA16 LINE L1 4025 6166 0 29 0 0 0 chr3 27071384 27071413 -200453165 + AT_rich Low_complexity Low_complexity 1 29 0 239 221 26 13 chr3 27071484 27071561 -200453017 - L1M4 LINE L1 -1961 4185 4108 349 311 68 21 chr3 27071687 27071877 -200452701 - L1M4 LINE L1 -2194 3952 3754 35562 36 2 1 chr3 27071910 27077036 -200447542 + L1PA3 LINE L1 1024 6152 -3 603 178 9 0 chr3 27077047 27077154 -200447424 + MLT2F LTR ERVL 556 663 0 1318 184 0 0 chr3 27078241 27078453 -200446125 + AluJb SINE Alu 79 290 -22 544 286 21 87 chr3 27078463 27078704 -200445874 + MIR SINE MIR 38 262 0 3566 131 24 2 chr3 27079211 27079784 -200444794 - L1PA16 LINE L1 0 6166 5581 261 282 59 0 chr3 27079964 27080049 -200444529 - MLT1K LTR MaLR 0 588 499 216 286 0 88 chr3 27080505 27080596 -200443982 - MIR SINE MIR -160 102 20 629 224 60 27 chr3 27081011 27081194 -200443384 - L1ME3A LINE L1 -9 6161 5973 32 26 0 0 chr3 27081958 27081997 -200442581 + AT_rich Low_complexity Low_complexity 1 39 0 22311 38 1 0 chr3 27081997 27085495 -200439083 - L1PA4 LINE L1 -11 6144 2646 1003 191 54 33 chr3 27085853 27086094 -200438484 + MLT2B3 LTR ERVL 1 246 -308 759 235 71 6 chr3 27086388 27086571 -200438007 + MER63A DNA MER1_type 2 196 -14 1489 260 70 24 chr3 27086884 27087397 -200437181 - MLT1F1 LTR MaLR 0 567 27 2226 120 38 14 chr3 27088741 27089107 -200435471 + THE1C LTR MaLR 1 375 0 292 307 13 0 chr3 27089892 27089967 -200434611 - MLT1L LTR MaLR -127 488 413 235 208 38 0 chr3 27090307 27090360 -200434218 + (TATG)n Simple_repeat Simple_repeat 2 56 0 469 292 83 50 chr3 27090370 27090610 -200433968 + MIR SINE MIR 15 262 0 2144 150 3 57 chr3 27092023 27092410 -200432168 + MER47A DNA MER2_type 1 366 0 185 289 93 41 chr3 27092987 27093084 -200431494 + L2 LINE L2 2310 2411 -903 306 0 0 0 chr3 27094306 27094340 -200430238 + (TG)n Simple_repeat Simple_repeat 1 34 0 2044 195 42 26 chr3 27094795 27095247 -200429331 + MLT1C LTR MaLR 9 467 0 385 287 149 23 chr3 27095332 27095506 -200429072 - MLT1I LTR MaLR -114 295 100 21 71 0 0 chr3 27095788 27095830 -200428748 + AT_rich Low_complexity Low_complexity 1 42 0 225 222 0 19 chr3 27097510 27097564 -200427014 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 1009 81 0 0 chr3 27098106 27098242 -200426336 - AluY SINE Alu -7 304 169 582 82 0 0 chr3 27098242 27098327 -200426251 + Alu SINE Alu 225 309 0 1046 171 5 32 chr3 27098348 27098564 -200426014 + L1MC2 LINE L1 5808 6017 -327 1220 68 6 45 chr3 27098607 27098784 -200425794 - AluY SINE Alu -8 303 134 1357 183 50 47 chr3 27098784 27098812 -200425766 + L1MC2 LINE L1 6019 6045 -299 5012 111 83 0 chr3 27098812 27099575 -200425003 + LTR12 LTR ERV1 1 826 0 1357 183 50 47 chr3 27099575 27099863 -200424715 + L1MC2 LINE L1 6045 6336 -8 22 35 0 0 chr3 27099992 27100021 -200424557 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 27100071 27100101 -200424477 + AT_rich Low_complexity Low_complexity 1 30 0 278 130 130 0 chr3 27100191 27100260 -200424318 - L1MA8 LINE L1 -5 6286 6209 354 298 77 40 chr3 27100289 27100537 -200424041 + L1M4 LINE L1 4591 4847 -1299 2725 156 0 5 chr3 27100673 27101103 -200423475 - MSTA LTR MaLR 0 428 1 267 206 79 0 chr3 27103564 27103627 -200420951 - L1ME LINE L1 -507 5614 5547 30 27 0 0 chr3 27103708 27103745 -200420833 + AT_rich Low_complexity Low_complexity 1 37 0 1779 175 0 10 chr3 27103913 27104210 -200420368 + AluSx SINE Alu 1 294 -18 312 27 0 0 chr3 27104231 27104268 -200420310 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 342 0 0 0 chr3 27104267 27104305 -200420273 + (TG)n Simple_repeat Simple_repeat 2 39 0 1359 214 191 19 chr3 27105467 27105897 -200418681 - MLT1D LTR MaLR -1 504 1 33 66 0 0 chr3 27106039 27106100 -200418478 + AT_rich Low_complexity Low_complexity 1 61 0 1617 226 106 22 chr3 27106104 27106568 -200418010 - L1ME1 LINE L1 -5 6161 5659 217 227 0 0 chr3 27108271 27108315 -200416263 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 273 208 69 14 chr3 27108351 27108423 -200416155 - L2 LINE L2 -65 3248 3173 7410 35 6 0 chr3 27108713 27110290 -200414288 + L1PA4 LINE L1 4574 6155 0 444 151 0 2 chr3 27110291 27110368 -200414210 + L1PB3 LINE L1 6020 6095 -56 1672 176 10 7 chr3 27110638 27110927 -200413651 - AluJo SINE Alu -22 290 1 18879 172 62 23 chr3 27111535 27113447 -200411131 + L1M1 LINE L1 17 1855 -5710 201 74 0 0 chr3 27113447 27113474 -200411104 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 18879 172 62 23 chr3 27113474 27114429 -200410149 + L1M1 LINE L1 1855 2772 -4793 2259 117 3 0 chr3 27114429 27114729 -200409849 + AluSp SINE Alu 1 301 -12 18879 172 62 23 chr3 27114729 27116625 -200407953 + L1M1 LINE L1 2772 5005 -2560 1755 183 0 0 chr3 27116625 27116909 -200407669 + AluJo SINE Alu 20 303 -9 18879 172 62 23 chr3 27116909 27117382 -200407196 + L1M1 LINE L1 5005 5459 -2106 220 300 0 20 chr3 27117386 27117436 -200407142 - MIR SINE MIR -194 68 20 1763 247 99 53 chr3 27118276 27118430 -200406148 - MLT1E LTR MaLR 0 593 448 1042 156 62 9 chr3 27118430 27118655 -200405923 + L1MA8 LINE L1 6051 6287 -4 1763 247 99 53 chr3 27118655 27119067 -200405511 - MLT1E LTR MaLR -145 448 1 202 237 0 34 chr3 27119524 27119583 -200404995 + GA-rich Low_complexity Low_complexity 2 58 0 843 303 24 12 chr3 27120492 27120746 -200403832 + MIR SINE MIR 3 259 -3 378 304 126 0 chr3 27121064 27121199 -200403379 + MIR SINE MIR 97 248 -14 188 347 74 25 chr3 27121734 27121855 -200402723 - L3 LINE CR1 -11 1566 1440 2265 76 0 0 chr3 27122325 27122627 -200401951 - L1PA6 LINE L1 -2 6152 5851 252 0 0 0 chr3 27122631 27122659 -200401919 + (T)n Simple_repeat Simple_repeat 1 28 0 376 123 0 74 chr3 27123133 27123214 -200401364 - MADE1 DNA Mariner 0 80 6 1864 165 69 51 chr3 27123226 27123675 -200400903 + MSTB2 LTR MaLR 1 457 0 415 136 264 0 chr3 27123807 27123917 -200400661 + LTR41 LTR ERVL 52 190 -583 373 195 13 0 chr3 27124239 27124316 -200400262 + LTR41 LTR ERVL 695 772 -1 1027 309 40 9 chr3 27124443 27124767 -200399811 + LTR16C LTR ERVL 148 481 -10 412 143 214 0 chr3 27125746 27125830 -200398748 - MER5A DNA MER1_type 0 189 88 396 255 20 0 chr3 27125833 27125935 -200398643 + MER5B DNA MER1_type 75 178 0 2320 101 0 0 chr3 27125966 27126274 -200398304 - AluSc SINE Alu -1 308 1 504 255 161 19 chr3 27126282 27126443 -200398135 - MER5A DNA MER1_type -2 187 4 371 275 28 39 chr3 27128116 27128294 -200396284 + GA-rich Low_complexity Low_complexity 3 178 0 468 299 58 6 chr3 27128321 27128495 -200396083 - MIR SINE MIR -6 256 74 231 329 0 13 chr3 27129363 27129442 -200395136 + MER5A DNA MER1_type 112 189 0 245 358 131 7 chr3 27129573 27129710 -200394868 - MER5A DNA MER1_type 0 189 36 293 289 126 44 chr3 27129721 27129880 -200394698 - L3 LINE CR1 -51 1526 1355 2538 141 14 16 chr3 27130581 27131015 -200393563 + Tigger2a DNA MER2_type 2 434 0 306 242 36 113 chr3 27131116 27131310 -200393268 + MIR SINE MIR 84 262 0 2421 74 0 0 chr3 27134063 27134362 -200390216 - AluY SINE Alu 0 311 13 228 398 62 0 chr3 27136378 27136491 -200388087 - MIR SINE MIR -73 135 16 2330 146 32 0 chr3 27136846 27137251 -200387327 - L1MA4 LINE L1 -1 6299 5882 539 65 0 13 chr3 27137877 27137954 -200386624 + L1PA5 LINE L1 6078 6153 -1 286 338 150 33 chr3 27138164 27138525 -200386053 + L2 LINE L2 2870 3272 0 429 276 60 22 chr3 27139273 27139407 -200385171 - L2 LINE L2 -6 3307 3169 24 53 0 0 chr3 27139471 27139509 -200385069 + AT_rich Low_complexity Low_complexity 1 38 0 2153 98 0 0 chr3 27140264 27140540 -200384038 - AluSx SINE Alu -36 276 1 24 0 0 0 chr3 27140617 27140641 -200383937 + AT_rich Low_complexity Low_complexity 1 24 0 4842 163 30 14 chr3 27140653 27141008 -200383570 - L1MB1 LINE L1 -1 6167 5819 349 36 36 0 chr3 27141008 27141063 -200383515 + (CA)n Simple_repeat Simple_repeat 1 57 0 4842 163 30 14 chr3 27141063 27142067 -200382511 - L1MB1 LINE L1 -349 5819 4781 24 0 0 0 chr3 27142080 27142104 -200382474 + AT_rich Low_complexity Low_complexity 1 24 0 558 298 20 45 chr3 27144281 27144479 -200380099 + L2 LINE L2 3102 3294 -19 1707 152 3 21 chr3 27194573 27194883 -200329695 + AluJb SINE Alu 7 311 0 1373 187 30 26 chr3 27195074 27195342 -200329236 - AluJo SINE Alu -39 273 5 225 94 0 0 chr3 27195360 27195392 -200329186 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 2052 105 0 81 chr3 27195552 27195875 -200328703 - AluSx SINE Alu -15 297 1 2236 110 3 0 chr3 27195877 27196176 -200328402 - AluSx SINE Alu -12 300 1 1597 166 55 7 chr3 27197343 27197651 -200326927 + MER33 DNA MER1_type 1 323 -1 980 192 22 157 chr3 27198425 27198719 -200325859 - L1MC4 LINE L1 -1 8041 7856 2119 136 0 0 chr3 27198719 27199013 -200325565 - AluSx SINE Alu -18 294 1 980 192 22 157 chr3 27199013 27199274 -200325304 - L1MC4 LINE L1 -186 7856 7561 26 30 0 0 chr3 27199913 27199946 -200324632 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr3 27201250 27201277 -200323301 + AT_rich Low_complexity Low_complexity 1 27 0 898 127 0 0 chr3 27201746 27201864 -200322714 + FLAM_C SINE Alu 1 118 -25 2002 135 10 13 chr3 27202175 27202487 -200322091 - AluSx SINE Alu -1 311 1 2061 153 0 6 chr3 27202665 27202979 -200321599 + AluJb SINE Alu 1 312 0 1815 167 0 7 chr3 27202995 27203276 -200321302 + AluJb SINE Alu 3 281 -31 1972 120 0 48 chr3 27203471 27203780 -200320798 - AluSg SINE Alu -16 294 1 1728 129 30 0 chr3 27203780 27204044 -200320534 + L1MA5A LINE L1 6020 6291 -6 2247 156 49 21 chr3 27204060 27204490 -200320088 - L1MA9 LINE L1 0 6312 5871 1525 185 22 33 chr3 27204491 27204767 -200319811 - AluJo SINE Alu -28 284 12 239 189 0 0 chr3 27204902 27204955 -200319623 + L1MC4 LINE L1 6652 6704 -1338 898 162 0 7 chr3 27205078 27205214 -200319364 - AluJb SINE Alu -49 263 129 1911 136 3 26 chr3 27205243 27205545 -200319033 - AluSq SINE Alu -18 295 1 2254 109 3 6 chr3 27205578 27205890 -200318688 + AluSp SINE Alu 1 311 -2 751 198 0 32 chr3 27206127 27206253 -200318325 - FLAM_A SINE Alu -11 122 1 284 259 47 0 chr3 27206289 27206374 -200318204 - L1MC/D LINE L1 -2019 5789 5701 333 263 11 32 chr3 27206467 27206562 -200318016 - L2 LINE L2 -4 3268 3176 1742 161 40 20 chr3 27206580 27206884 -200317694 + AluJb SINE Alu 1 310 -2 3512 143 35 41 chr3 27206884 27207513 -200317065 + L1MC2 LINE L1 5195 5818 -526 2285 107 3 7 chr3 27207513 27207822 -200316756 + AluSx SINE Alu 4 311 -1 3512 143 35 41 chr3 27207822 27207899 -200316679 + L1MC2 LINE L1 5818 5894 -450 1982 136 14 0 chr3 27207899 27208187 -200316391 + AluSx SINE Alu 1 386 0 660 75 11 0 chr3 27208187 27208281 -200316297 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2882 124 26 7 chr3 27208286 27208739 -200315839 + L1MC2 LINE L1 5874 6335 -9 343 256 151 12 chr3 27209071 27209243 -200315335 - MIR SINE MIR -4 258 63 352 25 0 0 chr3 27209266 27209306 -200315272 - L1MC/D LINE L1 -2188 5597 5558 417 291 156 32 chr3 27210076 27210344 -200314234 + L2 LINE L2 2712 3010 -262 2247 97 3 0 chr3 27210470 27210484 -200314094 - AluSx SINE Alu -12 300 288 543 101 0 0 chr3 27210484 27210563 -200314015 + (CTTA)n Simple_repeat Simple_repeat 1 79 0 2247 97 3 0 chr3 27210563 27210838 -200313740 - AluSx SINE Alu -24 288 10 2337 88 10 0 chr3 27210847 27211144 -200313434 - AluSp SINE Alu -13 300 1 28 0 0 0 chr3 27211282 27211310 -200313268 + AT_rich Low_complexity Low_complexity 1 28 0 688 241 120 26 chr3 27211520 27211711 -200312867 - MER3 DNA MER1_type 0 209 1 250 192 231 26 chr3 27211919 27211997 -200312581 + MIR SINE MIR 166 259 -3 24 0 0 0 chr3 27212027 27212051 -200312527 + AT_rich Low_complexity Low_complexity 1 24 0 1542 179 0 49 chr3 27212057 27212186 -200312392 + AluJb SINE Alu 18 152 -160 2107 116 10 10 chr3 27212186 27212488 -200312090 + AluSx SINE Alu 1 302 -10 1542 179 0 49 chr3 27212488 27212643 -200311935 + AluJb SINE Alu 152 288 -24 23 0 0 0 chr3 27212643 27212666 -200311912 + AT_rich Low_complexity Low_complexity 1 23 0 328 338 89 6 chr3 27212726 27212883 -200311695 + MIR SINE MIR 87 256 -6 2298 108 0 0 chr3 27212884 27213181 -200311397 - AluSx SINE Alu -15 297 1 3036 218 67 61 chr3 27213902 27213930 -200310648 - Zaphod DNA AcHobo -3060 971 945 2325 101 3 0 chr3 27213930 27214228 -200310350 - AluSx SINE Alu -13 299 1 3036 218 67 61 chr3 27214228 27214457 -200310121 - Zaphod DNA AcHobo -3086 945 719 2312 86 0 10 chr3 27214457 27214758 -200309820 - AluSp SINE Alu -11 302 5 3036 218 67 61 chr3 27214758 27215363 -200309215 - Zaphod DNA AcHobo -3312 719 100 1710 125 54 14 chr3 27215363 27215643 -200308935 - AluSx SINE Alu -21 291 1 3036 218 67 61 chr3 27215643 27215740 -200308838 - Zaphod DNA AcHobo -3931 100 5 1956 121 0 21 chr3 27215762 27216043 -200308535 + AluSx SINE Alu 1 275 -37 255 31 0 0 chr3 27216049 27216081 -200308497 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2180 115 0 0 chr3 27216093 27216388 -200308190 + AluSx SINE Alu 1 295 -17 2070 145 3 0 chr3 27216476 27216786 -200307792 + AluSx SINE Alu 1 311 -1 491 307 24 16 chr3 27216907 27217158 -200307420 + L1ME3 LINE L1 4957 5209 -937 1068 218 79 113 chr3 27217185 27217437 -200307141 + L1ME3 LINE L1 5294 5553 -609 2332 103 0 0 chr3 27217437 27217739 -200306839 - AluSx SINE Alu -10 302 1 1808 149 57 0 chr3 27217741 27218022 -200306556 - AluSx SINE Alu -15 297 1 1068 218 79 113 chr3 27218022 27218210 -200306368 + L1ME3 LINE L1 5554 5747 -415 2260 92 31 0 chr3 27218210 27218502 -200306076 + AluSq SINE Alu 1 301 -12 1068 218 79 113 chr3 27218502 27218624 -200305954 + L1ME3 LINE L1 5747 5872 -290 1454 198 7 47 chr3 27218624 27218922 -200305656 + AluJb SINE Alu 1 286 -26 180 77 0 0 chr3 27218925 27218951 -200305627 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1068 218 79 113 chr3 27218951 27219011 -200305567 + L1ME3 LINE L1 5874 5935 -227 2059 86 0 76 chr3 27219011 27219315 -200305263 + AluSq SINE Alu 1 281 -32 225 0 0 0 chr3 27219315 27219340 -200305238 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1068 218 79 113 chr3 27219340 27219394 -200305184 + L1ME3 LINE L1 5933 5937 -225 559 310 46 29 chr3 27220368 27220649 -200303929 + L2 LINE L2 2937 3222 -91 298 133 0 0 chr3 27220756 27220801 -200303777 + L2 LINE L2 3265 3309 -4 414 146 62 62 chr3 27220863 27220959 -200303619 + AluY SINE Alu 2 97 -214 2177 93 0 30 chr3 27220988 27221290 -200303288 + AluSq SINE Alu 1 293 -20 202 179 0 0 chr3 27221290 27221329 -200303249 - MIR SINE MIR -129 133 95 1800 153 3 40 chr3 27221557 27221858 -200302720 + AluJb SINE Alu 17 306 -6 2120 123 3 0 chr3 27222084 27222397 -200302181 - AluSx SINE Alu 0 314 1 2109 108 0 14 chr3 27222417 27222714 -200301864 - AluSg1 SINE Alu 0 309 17 454 264 136 0 chr3 27223432 27223557 -200301021 + MIR SINE MIR 13 154 -108 650 274 227 29 chr3 27223570 27223989 -200300589 - L2 LINE L2 -1 3312 2811 1204 215 165 8 chr3 27223997 27224360 -200300218 - L1ME2 LINE L1 -16 6148 5729 1094 288 46 5 chr3 27224372 27224761 -200299817 - L2 LINE L2 -601 2713 2309 211 308 44 33 chr3 27224760 27224851 -200299727 + MIR SINE MIR 171 262 0 * 208 400 0 21 chr3 27225088 27225183 -200299395 + MIR SINE MIR 42 134 -74 219 331 35 28 chr3 27225578 27225723 -200298855 - L2 LINE L2 -1003 2311 2166 2347 87 17 0 chr3 27226475 27226775 -200297803 + AluSq SINE Alu 1 305 -8 437 226 205 19 chr3 27227165 27227312 -200297266 + MER5A DNA MER1_type 12 188 -1 25 0 0 0 chr3 27227404 27227429 -200297149 + AT_rich Low_complexity Low_complexity 1 25 0 2399 66 17 13 chr3 27227432 27227734 -200296844 + AluSx SINE Alu 2 304 -8 2295 75 41 0 chr3 27227734 27228028 -200296550 + AluY SINE Alu 1 306 -5 2513 219 32 5 chr3 27228028 27228594 -200295984 - L1MB8 LINE L1 -11 6167 5587 2231 89 4 0 chr3 27228618 27228928 -200295650 + AluSp SINE Alu 1 311 0 1531 173 13 70 chr3 27228937 27229263 -200295315 + AluJo SINE Alu 2 310 0 4243 172 28 7 chr3 27229263 27230012 -200294566 - L1MB3 LINE L1 -7 6176 5412 43 47 0 0 chr3 27230014 27230078 -200294500 + AT_rich Low_complexity Low_complexity 1 64 0 351 86 105 6 chr3 27230090 27230252 -200294326 + (TA)n Simple_repeat Simple_repeat 1 178 0 296 125 75 0 chr3 27230253 27230333 -200294245 + (TATAA)n Simple_repeat Simple_repeat 4 89 0 417 66 90 18 chr3 27230677 27230844 -200293734 + (TA)n Simple_repeat Simple_repeat 1 179 0 306 56 127 0 chr3 27230864 27231006 -200293572 + (TA)n Simple_repeat Simple_repeat 2 161 0 2015 132 0 0 chr3 27231007 27231288 -200293290 - AluSx SINE Alu -31 281 1 1548 178 16 13 chr3 27231288 27231595 -200292983 - L1MB3 LINE L1 -743 5403 5115 1371 200 87 0 chr3 27231595 27231870 -200292708 - AluJo SINE Alu -13 299 1 1548 178 16 13 chr3 27231870 27231952 -200292626 - L1MB3 LINE L1 -1031 5115 5035 600 163 0 0 chr3 27231953 27232051 -200292527 - AluSg/x SINE Alu -1 308 211 2427 88 13 0 chr3 27232062 27232368 -200292210 - AluSg SINE Alu 0 310 1 1084 208 4 4 chr3 27232379 27232605 -200291973 - L1MB3 LINE L1 -1127 5019 4794 540 197 34 8 chr3 27232603 27232720 -200291858 - L1MB8 LINE L1 -591 5593 5474 * 1804 110 0 4 chr3 27232732 27232986 -200291592 - L1MA6 LINE L1 0 6300 6048 181 292 45 22 chr3 27233165 27233254 -200291324 + MIR SINE MIR 82 172 -90 1586 198 24 89 chr3 27234470 27234927 -200289651 - MLT1C LTR MaLR 0 467 43 2074 120 10 7 chr3 27234927 27235228 -200289350 - AluSx SINE Alu -10 302 1 1586 198 24 89 chr3 27235228 27235264 -200289314 - MLT1C LTR MaLR -424 43 6 852 158 56 64 chr3 27235269 27235535 -200289043 - MER33 DNA MER1_type -60 264 1 2097 105 0 24 chr3 27236183 27236478 -200288100 - AluSx SINE Alu 0 312 25 2263 122 3 0 chr3 27236512 27236823 -200287755 - AluSx SINE Alu 0 312 1 748 243 188 59 chr3 27236847 27237251 -200287327 + L2 LINE L2 2858 3313 0 1983 188 55 66 chr3 27237547 27238037 -200286541 - MER34B LTR ERV1 0 565 80 2320 105 0 16 chr3 27238037 27238352 -200286226 - AluSg SINE Alu 0 310 1 1983 188 55 66 chr3 27238352 27238421 -200286157 - MER34B LTR ERV1 -485 80 12 2533 68 3 0 chr3 27238821 27239130 -200285448 - AluY SINE Alu -1 310 1 2003 126 7 3 chr3 27239254 27239555 -200285023 + AluSx SINE Alu 2 303 -9 882 183 91 37 chr3 27239575 27239820 -200284758 - MER33 DNA MER1_type -71 253 1 204 125 0 0 chr3 27242248 27242280 -200282298 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 283 249 67 79 chr3 27242632 27242797 -200281781 + L1MC/D LINE L1 5605 5767 -2041 724 255 70 15 chr3 27242868 27243068 -200281510 + MIR SINE MIR 46 256 -6 2481 80 0 0 chr3 27243512 27243813 -200280765 + AluSg SINE Alu 1 301 -9 2522 162 85 21 chr3 27243829 27244311 -200280267 - MER21B LTR ERV1 -21 842 330 968 86 43 7 chr3 27244314 27244454 -200280124 + AluSg/x SINE Alu 156 300 -12 641 199 40 163 chr3 27244480 27244756 -200279822 - MER21B LTR ERV1 -621 242 1 358 277 78 18 chr3 27245071 27245237 -200279341 - L1MC5 LINE L1 -32 7929 7754 186 326 94 72 chr3 27245670 27245726 -200278852 + MIR3 SINE MIR 10 63 -145 795 232 0 18 chr3 27245726 27245894 -200278684 + FRAM SINE Alu 2 166 0 186 326 94 72 chr3 27245894 27245975 -200278603 + MIR3 SINE MIR 63 150 -58 1019 147 220 5 chr3 27245975 27246240 -200278338 + MER33 DNA MER1_type 1 362 -1 195 158 118 118 chr3 27247669 27247745 -200276833 + L2 LINE L2 3190 3265 -7 250 268 155 63 chr3 27248120 27248262 -200276316 + MIR SINE MIR 37 191 -71 803 210 48 0 chr3 27248331 27248498 -200276080 + FAM SINE Alu 1 175 0 1814 133 14 29 chr3 27248897 27249175 -200275403 + AluSx SINE Alu 1 274 -38 2141 76 25 4 chr3 27249175 27249475 -200275103 - AluSg SINE Alu 0 306 1 656 133 11 0 chr3 27249825 27249915 -200274663 + FLAM_C SINE Alu 33 123 -20 231 281 0 62 chr3 27250044 27250140 -200274438 + L1MEc LINE L1 2 91 -6305 1596 249 23 42 chr3 27250142 27250619 -200273959 + L1MEc LINE L1 293 760 -5636 985 254 82 58 chr3 27250624 27251037 -200273541 + MLT1C LTR MaLR 45 467 0 548 253 44 0 chr3 27251037 27251195 -200273383 + L1MEc LINE L1 818 982 -5414 4757 180 48 14 chr3 27251207 27252246 -200272332 + L1 LINE L1 2782 3856 -2290 735 183 0 0 chr3 27252246 27252366 -200272212 + U4 snRNA snRNA 1 120 -25 765 184 19 6 chr3 27252368 27252526 -200272052 + L1 LINE L1 3846 4005 -2141 508 197 23 38 chr3 27252527 27252659 -200271919 + MSTB1 LTR MaLR 1 130 -302 225 227 0 0 chr3 27252648 27252692 -200271886 + U4 snRNA snRNA 77 120 -25 * 834 175 12 12 chr3 27252694 27252854 -200271724 + L1MA4A LINE L1 3846 4005 -2141 554 171 29 9 chr3 27252855 27252960 -200271618 + MSTB1 LTR MaLR 1 107 -325 2175 151 48 10 chr3 27252960 27253357 -200271221 + L1MA4A LINE L1 5634 6045 -258 961 114 0 8 chr3 27253359 27253490 -200271088 + AluSg SINE Alu 3 132 -178 2238 108 0 0 chr3 27253491 27253786 -200270792 + AluSx SINE Alu 1 295 -17 1648 137 19 0 chr3 27253786 27254042 -200270536 + L1MA4 LINE L1 6033 6293 -7 2230 102 7 0 chr3 27254525 27254819 -200269759 - AluSc SINE Alu -13 296 1 2223 93 10 32 chr3 27254820 27255132 -200269446 - AluSx SINE Alu -7 305 1 255 337 31 48 chr3 27255567 27255734 -200268844 + MIR SINE MIR 19 192 -62 1208 183 24 9 chr3 27257867 27258080 -200266498 + Tigger3b DNA MER2_type 1 216 -1015 1157 73 0 0 chr3 27258080 27258217 -200266361 + AluSq/x SINE Alu 1 137 -176 2375 81 0 3 chr3 27258219 27258514 -200266064 + AluSg SINE Alu 4 297 -13 5388 113 58 72 chr3 27258514 27258903 -200265675 + Tigger3b DNA MER2_type 202 595 -2433 2281 88 0 26 chr3 27258903 27259211 -200265367 + AluSx SINE Alu 1 300 -12 5388 113 58 72 chr3 27259211 27259865 -200264713 + Tigger3b DNA MER2_type 595 1231 0 1783 168 0 13 chr3 27260267 27260570 -200264008 + AluJb SINE Alu 1 299 -13 2273 94 7 10 chr3 27260586 27260893 -200263685 - AluSp SINE Alu -7 306 1 25 31 0 0 chr3 27261156 27261188 -200263390 + AT_rich Low_complexity Low_complexity 1 32 0 579 86 0 0 chr3 27261268 27261338 -200263240 + AluSp/q SINE Alu 197 266 -47 1938 134 16 10 chr3 27261406 27261713 -200262865 + AluSx SINE Alu 1 309 -3 576 101 18 83 chr3 27261831 27261940 -200262638 + MER2 DNA MER2_type 4 105 -240 1294 155 104 20 chr3 27261956 27262207 -200262371 - AluJo SINE Alu -40 272 1 1057 121 0 0 chr3 27262221 27262370 -200262208 - AluSg/x SINE Alu -15 295 147 240 160 0 0 chr3 27262371 27262421 -200262157 - LTR66 LTR ERVL -166 444 395 * 243 133 0 0 chr3 27262387 27262432 -200262146 + LTR66 LTR ERVL 395 439 -171 315 71 0 0 chr3 27262432 27262474 -200262104 + (CA)n Simple_repeat Simple_repeat 2 43 0 908 102 8 8 chr3 27262483 27262611 -200261967 - AluSq/x SINE Alu -183 130 3 556 193 104 47 chr3 27262613 27262825 -200261753 + MER2 DNA MER2_type 121 344 -1 2405 80 3 0 chr3 27262928 27263228 -200261350 + AluSp SINE Alu 1 301 -12 2137 102 13 0 chr3 27263734 27264038 -200260540 + AluSp SINE Alu 5 312 -1 942 154 13 13 chr3 27264049 27264205 -200260373 + FRAM SINE Alu 3 158 -8 358 240 0 1 chr3 27264207 27264289 -200260289 + MIR SINE MIR 71 152 -56 1792 182 3 0 chr3 27264621 27264917 -200259661 + AluJo SINE Alu 1 297 -15 22 0 0 0 chr3 27264918 27264940 -200259638 + AT_rich Low_complexity Low_complexity 1 22 0 324 248 62 105 chr3 27265408 27265531 -200259047 - L1MC5 LINE L1 -36 7925 7812 1960 133 11 0 chr3 27265531 27265836 -200258742 - AluSx SINE Alu 0 308 1 324 248 62 105 chr3 27265836 27265921 -200258657 - L1MC5 LINE L1 -149 7812 7725 2220 82 7 10 chr3 27265962 27266285 -200258293 + AluSp SINE Alu 1 313 0 200 284 108 0 chr3 27266287 27266361 -200258217 - L2 LINE L2 -31 3241 3160 283 264 0 91 chr3 27266377 27266487 -200258091 - L3 LINE CR1 -893 684 585 24 0 0 0 chr3 27266697 27266721 -200257857 + AT_rich Low_complexity Low_complexity 1 24 0 2299 106 0 0 chr3 27266958 27267261 -200257317 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr3 27267265 27267288 -200257290 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 344 281 0 0 chr3 27267584 27267666 -200256912 + (TGG)n Simple_repeat Simple_repeat 3 84 0 255 170 0 0 chr3 27268254 27268301 -200256277 + (TA)n Simple_repeat Simple_repeat 1 47 0 338 254 0 44 chr3 27268303 27268417 -200256161 - L1MC4 LINE L1 -1320 6722 6614 * 364 211 0 53 chr3 27268326 27268421 -200256157 + L1MC4 LINE L1 6614 6703 -1339 1624 150 0 89 chr3 27268440 27268767 -200255811 + AluJo SINE Alu 2 299 -13 260 250 125 11 chr3 27269173 27269261 -200255317 + L2 LINE L2 2287 2384 -930 1054 277 101 9 chr3 27269268 27269780 -200254798 + MLT2E LTR ERVL 21 628 0 2064 111 7 0 chr3 27269862 27270151 -200254427 - AluSx SINE Alu -21 291 1 289 345 135 13 chr3 27270155 27270459 -200254119 + L2 LINE L2 2520 2860 -454 1869 166 0 3 chr3 27270601 27270896 -200253682 + AluJb SINE Alu 1 294 -18 257 154 64 0 chr3 27270896 27271006 -200253572 + (TA)n Simple_repeat Simple_repeat 2 118 0 30 59 0 0 chr3 27271374 27271425 -200253153 + AT_rich Low_complexity Low_complexity 1 51 0 225 263 0 0 chr3 27271583 27271659 -200252919 - L1ME3 LINE L1 0 6162 6087 343 299 32 63 chr3 27271689 27271704 -200252874 - L1MC4 LINE L1 -1854 5954 5940 2139 144 0 0 chr3 27271704 27272009 -200252569 - AluSx SINE Alu -7 305 1 343 299 32 63 chr3 27272009 27272214 -200252364 - L1MC4 LINE L1 -1868 5940 5741 373 274 152 30 chr3 27272254 27272491 -200252087 + L1M4 LINE L1 4280 4545 -1601 2247 101 0 0 chr3 27272491 27272801 -200251777 + AluSx SINE Alu 2 311 0 324 249 41 96 chr3 27272817 27273014 -200251564 + L1M4 LINE L1 5176 5361 -785 21 36 0 0 chr3 27273477 27273505 -200251073 + AT_rich Low_complexity Low_complexity 1 28 0 2482 80 0 0 chr3 27273694 27273994 -200250584 + AluSg SINE Alu 1 300 -10 225 267 47 0 chr3 27274138 27274224 -200250354 + L1MC4 LINE L1 6614 6703 -1339 * 232 258 0 43 chr3 27274162 27274255 -200250323 - L1MC4 LINE L1 -1339 6703 6615 835 178 13 19 chr3 27274394 27274551 -200250027 - AluSq SINE Alu -156 157 2 228 133 156 0 chr3 27274552 27274597 -200249981 - Charlie5 DNA MER1_type -204 2408 2357 1070 168 16 14 chr3 27274606 27274841 -200249737 - Charlie5 DNA MER1_type -2488 124 1 1133 190 19 5 chr3 27274908 27275112 -200249466 + MER7A DNA MER2_type 14 218 -128 1391 164 0 0 chr3 27275112 27275320 -200249258 + MER1B DNA MER1_type 1 208 -89 653 241 94 49 chr3 27275453 27275579 -200248999 + L1ME3 LINE L1 5879 5998 -164 2057 115 7 3 chr3 27275579 27275874 -200248704 - AluSx SINE Alu -16 296 1 653 241 94 49 chr3 27275874 27275992 -200248586 + L1ME3 LINE L1 5998 6134 -28 913 211 72 5 chr3 27276005 27276214 -200248364 - AluJo SINE Alu -3 309 87 2668 141 16 0 chr3 27276672 27277056 -200247522 + MLT1B LTR MaLR 1 390 0 394 200 56 11 chr3 27277221 27277311 -200247267 + MER58B DNA MER1_type 247 340 -1 1728 159 3 30 chr3 27278307 27278608 -200245970 + AluJo SINE Alu 7 299 -13 2235 109 0 3 chr3 27278633 27278927 -200245651 + AluSg SINE Alu 2 294 -16 27 0 0 0 chr3 27279068 27279095 -200245483 + AT_rich Low_complexity Low_complexity 1 27 0 273 285 100 31 chr3 27279415 27279545 -200245033 - L2 LINE L2 -254 3059 2921 260 168 208 40 chr3 27280434 27280535 -200244043 - L1MC4 LINE L1 -9 8033 7916 384 172 13 52 chr3 27280637 27280737 -200243841 - L1ME2 LINE L1 0 6164 6071 213 154 0 0 chr3 27282028 27282067 -200242511 + C-rich Low_complexity Low_complexity 4 42 0 9768 214 25 55 chr3 27282436 27283730 -200240848 - L1M2 LINE L1 -491 5800 4469 2126 134 0 3 chr3 27283730 27284028 -200240550 - AluSg SINE Alu -13 297 1 9768 214 25 55 chr3 27284028 27284194 -200240384 - L1M2 LINE L1 -1822 4469 4300 666 186 50 36 chr3 27284194 27284334 -200240244 + FLAM_C SINE Alu 2 143 0 9768 214 25 55 chr3 27284334 27285067 -200239511 - L1M2 LINE L1 -1991 4300 3547 1523 180 16 68 chr3 27285067 27285378 -200239200 - AluJo SINE Alu -15 297 3 9768 214 25 55 chr3 27285378 27286156 -200238422 - L1M2 LINE L1 -2744 3547 2748 528 104 26 0 chr3 27286156 27286233 -200238345 - MADE1 DNA Mariner -1 79 1 9768 214 25 55 chr3 27286233 27286546 -200238032 - L1M2 LINE L1 -3543 2748 2427 1808 166 0 3 chr3 27286546 27286865 -200237713 - AluSx SINE Alu 0 318 1 9768 214 25 55 chr3 27286865 27287032 -200237546 - L1M2 LINE L1 -3864 2427 2374 2223 116 3 0 chr3 27287032 27287335 -200237243 - AluSg SINE Alu -6 304 1 9768 214 25 55 chr3 27287335 27287387 -200237191 - L1M2 LINE L1 -3917 2374 2322 1324 240 64 4 chr3 27287456 27287824 -200236754 - LTR16C LTR ERVL -4 487 68 241 323 75 11 chr3 27288142 27288235 -200236343 - L2 LINE L2 -31 3241 3143 389 246 84 66 chr3 27288328 27288421 -200236157 + MIR SINE MIR 29 128 -134 1999 136 62 46 chr3 27288421 27288790 -200235788 - THE1C LTR MaLR 0 375 1 389 246 84 66 chr3 27288790 27288863 -200235715 + MIR SINE MIR 128 198 -64 1134 303 35 25 chr3 27289995 27290477 -200234101 - L2 LINE L2 -1 3312 2826 266 106 21 0 chr3 27291282 27291329 -200233249 + (GA)n Simple_repeat Simple_repeat 1 48 0 2007 138 3 16 chr3 27291863 27292168 -200232410 - AluSx SINE Alu -11 301 1 1709 160 3 7 chr3 27292282 27292564 -200232014 + AluSx SINE Alu 3 283 -29 227 91 0 73 chr3 27293646 27293701 -200230877 + (CCCCCT)n Simple_repeat Simple_repeat 4 54 0 598 220 180 7 chr3 27294854 27295004 -200229574 - MER5A DNA MER1_type 0 189 14 741 107 45 0 chr3 27295248 27295360 -200229218 + L1PB1 LINE L1 6032 6148 -3 22 0 0 0 chr3 27295450 27295472 -200229106 + AT_rich Low_complexity Low_complexity 1 22 0 1752 161 10 23 chr3 27295712 27296011 -200228567 - AluJb SINE Alu -17 295 1 298 239 0 15 chr3 27296031 27296098 -200228480 - L2 LINE L2 0 3313 3248 25 0 0 0 chr3 27296529 27296554 -200228024 + AT_rich Low_complexity Low_complexity 1 25 0 228 143 0 0 chr3 27296870 27296912 -200227666 + (A)n Simple_repeat Simple_repeat 1 42 0 455 126 5 3 chr3 27297005 27297218 -200227360 + AluJo SINE Alu 1 277 -35 219 36 0 0 chr3 27297221 27297249 -200227329 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 205 278 40 79 chr3 27297413 27297539 -200227039 + L2 LINE L2 2930 3050 -222 1936 155 0 10 chr3 27297820 27298124 -200226454 - AluJb SINE Alu -11 301 1 955 160 0 0 chr3 27298167 27298311 -200226267 - FRAM SINE Alu -30 146 3 498 332 108 22 chr3 27298486 27298709 -200225869 + MIR SINE MIR 2 243 -19 353 217 158 42 chr3 27298745 27298865 -200225713 + MIR SINE MIR 19 152 -110 1682 134 74 11 chr3 27299096 27299365 -200225213 + AluJb SINE Alu 1 286 -26 1259 202 0 18 chr3 27299592 27299815 -200224763 + MER20 DNA MER1_type 1 219 0 1334 138 121 86 chr3 27299881 27300171 -200224407 - AluJo SINE Alu -12 300 1 376 270 66 15 chr3 27300248 27300385 -200224193 - L1MB8 LINE L1 -1 6177 6034 2183 110 0 26 chr3 27300406 27300715 -200223863 - AluSx SINE Alu -11 301 1 283 241 53 100 chr3 27301625 27301676 -200222902 + MIR SINE MIR 56 108 -154 2281 71 32 0 chr3 27301676 27301959 -200222619 - AluSc SINE Alu -17 292 1 283 241 53 100 chr3 27301959 27302077 -200222501 + MIR SINE MIR 108 217 -45 264 170 38 19 chr3 27302215 27302268 -200222310 - MIR SINE MIR -64 144 91 1639 155 0 0 chr3 27302716 27302967 -200221611 + AluSx SINE Alu 1 251 -61 277 75 38 0 chr3 27304209 27304262 -200220316 + GA-rich Low_complexity Low_complexity 2 56 0 1044 157 194 12 chr3 27306103 27306383 -200218195 + MER33 DNA MER1_type 1 318 -6 1952 129 43 0 chr3 27306480 27306760 -200217818 + AluSx SINE Alu 1 292 -20 324 243 0 0 chr3 27306940 27307010 -200217568 - L1ME LINE L1 -310 5811 5742 1906 174 3 0 chr3 27307843 27308154 -200216424 - AluJo SINE Alu 0 312 1 2325 116 3 0 chr3 27309318 27309629 -200214949 - AluSx SINE Alu 0 312 1 1720 142 3 77 chr3 27309937 27310274 -200214304 + AluJo SINE Alu 1 312 0 258 304 32 96 chr3 27310421 27310546 -200214032 + MIR SINE MIR 16 132 -76 225 0 0 0 chr3 27310882 27310907 -200213671 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 128 0 167 chr3 27311282 27311384 -200213194 - Charlie5 DNA MER1_type -27 2585 2501 225 154 0 0 chr3 27311397 27311436 -200213142 + (TA)n Simple_repeat Simple_repeat 2 40 0 378 0 0 0 chr3 27311981 27312023 -200212555 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 1655 184 0 4 chr3 27312043 27312310 -200212268 - AluJo SINE Alu -41 271 6 2046 142 0 7 chr3 27313096 27313399 -200211179 + AluJb SINE Alu 11 311 -1 781 233 10 44 chr3 27313848 27314054 -200210524 - MIR SINE MIR -31 231 33 207 214 0 0 chr3 27316769 27316811 -200207767 + T-rich Low_complexity Low_complexity 1 42 0 232 258 0 30 chr3 27316833 27316899 -200207679 + MER5B DNA MER1_type 114 177 -1 864 244 42 0 chr3 27316930 27317123 -200207455 + MIR SINE MIR 51 251 -11 381 182 131 20 chr3 27317132 27317231 -200207347 + MIR SINE MIR 146 255 -7 1009 258 34 7 chr3 27318323 27318621 -200205957 - L1ME1 LINE L1 -8 6158 5853 722 220 0 39 chr3 27319109 27319291 -200205287 - MER5B DNA MER1_type -3 175 1 359 304 80 0 chr3 27319453 27319591 -200204987 - MIR SINE MIR -79 183 35 283 172 47 0 chr3 27320592 27320656 -200203922 - L1MC4 LINE L1 0 8042 7976 262 206 9 93 chr3 27320655 27320762 -200203816 - L1MC4 LINE L1 -23 8019 7922 * 323 168 32 13 chr3 27320862 27321017 -200203561 + (TA)n Simple_repeat Simple_repeat 2 159 0 330 26 0 0 chr3 27321030 27321069 -200203509 + (TG)n Simple_repeat Simple_repeat 2 40 0 216 203 0 34 chr3 27321088 27321134 -200203444 + GA-rich Low_complexity Low_complexity 2 47 -11 2208 99 0 29 chr3 27321134 27321446 -200203132 + AluSq SINE Alu 1 303 -10 216 203 0 34 chr3 27321446 27321458 -200203120 + GA-rich Low_complexity Low_complexity 47 58 0 258 100 50 0 chr3 27321460 27321520 -200203058 + (TA)n Simple_repeat Simple_repeat 1 63 0 264 262 33 8 chr3 27321588 27321710 -200202868 - L1MC4 LINE L1 -231 7811 7687 1311 209 36 56 chr3 27321716 27322160 -200202418 - L1MC4 LINE L1 -614 7428 6994 677 184 31 126 chr3 27322835 27322913 -200201665 - MLT1H LTR MaLR -318 231 147 2164 144 0 0 chr3 27322913 27323225 -200201353 - AluSx SINE Alu 0 312 1 677 184 31 126 chr3 27323225 27323401 -200201177 - MLT1H LTR MaLR -402 147 1 275 241 86 17 chr3 27323566 27323682 -200200896 - MER117 DNA MER1_type -1 196 73 24 77 0 0 chr3 27324316 27324368 -200200210 + AT_rich Low_complexity Low_complexity 1 52 0 191 170 21 0 chr3 27324380 27324427 -200200151 + (TA)n Simple_repeat Simple_repeat 2 49 0 495 0 0 0 chr3 27324430 27324485 -200200093 + (TG)n Simple_repeat Simple_repeat 2 56 0 243 348 45 25 chr3 27324742 27325182 -200199396 + L1M4 LINE L1 2492 2940 -3206 901 244 37 94 chr3 27325750 27326083 -200198495 - L1MC4 LINE L1 0 8042 7759 859 231 116 5 chr3 27326083 27326282 -200198296 + MER58A DNA MER1_type 4 224 0 901 244 37 94 chr3 27326282 27326567 -200198011 - L1MC4 LINE L1 -283 7759 7459 2461 159 24 14 chr3 27326919 27327341 -200197237 - MSTB LTR MaLR 0 426 1 367 241 0 0 chr3 27327386 27327465 -200197113 - MER63 DNA MER1_type -1 1060 982 2174 56 66 3 chr3 27327743 27328031 -200196547 + AluY SINE Alu 1 306 -5 1026 235 9 0 chr3 27328126 27328347 -200196231 + MER58A DNA MER1_type 1 223 -1 209 267 0 0 chr3 27328436 27328481 -200196097 + (TG)n Simple_repeat Simple_repeat 2 46 0 2375 89 7 0 chr3 27329243 27329545 -200195033 + AluSp SINE Alu 1 304 -9 2227 117 30 21 chr3 27330400 27330734 -200193844 - MER1B DNA MER1_type 0 337 1 2234 118 10 0 chr3 27331427 27331731 -200192847 + AluSq SINE Alu 1 307 -6 909 177 29 106 chr3 27331886 27332074 -200192504 - MER33 DNA MER1_type -2296 289 133 2073 143 0 3 chr3 27332074 27332375 -200192203 - AluSx SINE Alu -12 300 1 909 177 29 106 chr3 27332375 27332497 -200192081 - MER33 DNA MER1_type -2452 133 3 959 135 13 26 chr3 27332662 27332844 -200191734 - AluSg/x SINE Alu 0 312 137 314 195 11 0 chr3 27333557 27333644 -200190934 + (TG)n Simple_repeat Simple_repeat 2 89 0 2346 93 3 0 chr3 27333715 27334017 -200190561 - AluSq SINE Alu -10 303 1 1847 162 13 13 chr3 27334257 27334566 -200190012 - AluJo SINE Alu -3 309 1 2332 92 7 0 chr3 27334795 27335088 -200189490 + AluSp SINE Alu 1 295 -18 28 29 0 0 chr3 27335727 27335762 -200188816 + AT_rich Low_complexity Low_complexity 1 35 0 478 263 77 0 chr3 27336035 27336191 -200188387 - MER3 DNA MER1_type -30 179 12 254 280 68 8 chr3 27336206 27336324 -200188254 - L1MC/D LINE L1 -1980 5828 5704 315 303 73 58 chr3 27336335 27336975 -200187603 - L1MC/D LINE L1 -460 5661 4993 2058 71 0 43 chr3 27337087 27337399 -200187179 - AluSc SINE Alu 0 311 12 965 172 146 8 chr3 27337494 27337755 -200186823 - MER33 DNA MER1_type -22 302 6 899 326 64 64 chr3 27337863 27338076 -200186502 + L3 LINE CR1 933 1145 -432 2513 70 0 0 chr3 27338076 27338375 -200186203 + AluY SINE Alu 1 299 -12 899 326 64 64 chr3 27338375 27338805 -200185773 + L3 LINE CR1 1144 1576 -1 239 189 0 38 chr3 27339918 27339971 -200184607 + L2 LINE L2 3263 3313 0 1756 139 57 7 chr3 27340244 27340524 -200184054 - AluJb SINE Alu -18 294 1 705 165 17 0 chr3 27340562 27340677 -200183901 + FLAM_C SINE Alu 1 117 -26 304 271 100 0 chr3 27340785 27340925 -200183653 - L1ME4a LINE L1 -4 6117 5964 1726 151 3 68 chr3 27341593 27341917 -200182661 - AluJo SINE Alu -9 303 1 34 42 0 0 chr3 27342295 27342343 -200182235 + AT_rich Low_complexity Low_complexity 1 48 0 282 211 0 0 chr3 27342838 27342890 -200181688 + L2 LINE L2 3214 3265 -7 1898 148 24 3 chr3 27343197 27343494 -200181084 - AluSx SINE Alu -9 303 1 205 292 0 0 chr3 27344365 27344413 -200180165 + L2 LINE L2 3251 3298 -15 260 303 0 0 chr3 27345556 27345622 -200178956 + (TG)n Simple_repeat Simple_repeat 1 66 0 4452 143 24 1 chr3 27345991 27346710 -200177868 + L1PA16 LINE L1 5416 6150 -16 2542 71 0 3 chr3 27346965 27347276 -200177302 - AluY SINE Alu -1 310 1 1237 183 34 52 chr3 27347368 27347474 -200177104 + MER33 DNA MER1_type 3 109 -2476 2218 132 0 3 chr3 27347474 27347784 -200176794 - AluSx SINE Alu -3 309 1 1237 183 34 52 chr3 27347784 27348005 -200176573 + MER33 DNA MER1_type 109 324 0 216 0 0 0 chr3 27348243 27348267 -200176311 + (T)n Simple_repeat Simple_repeat 1 24 0 278 314 29 39 chr3 27349422 27349524 -200175054 - MIR SINE MIR -63 145 45 255 256 0 39 chr3 27349727 27349805 -200174773 - MER116 DNA Mariner 0 80 6 218 324 101 53 chr3 27349988 27350235 -200174343 - MIR SINE MIR -1 261 3 1466 158 5 0 chr3 27351986 27352208 -200172370 + AluJo SINE Alu 85 307 -5 257 284 14 27 chr3 27354744 27354818 -200169760 + L3 LINE CR1 1503 1575 -2 22 0 0 0 chr3 27355716 27355738 -200168840 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 27356927 27356948 -200167630 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 27357063 27357084 -200167494 + AT_rich Low_complexity Low_complexity 1 21 0 375 186 0 0 chr3 27358844 27358946 -200165632 + (TA)n Simple_repeat Simple_repeat 2 103 0 1741 157 91 0 chr3 27359187 27359505 -200165073 - MER7A DNA MER2_type 0 346 2 1113 162 26 64 chr3 27359729 27359963 -200164615 + AluJb SINE Alu 84 312 0 2245 106 3 0 chr3 27360273 27360566 -200164012 + AluSq SINE Alu 1 294 -19 1977 199 90 37 chr3 27360568 27360616 -200163962 - L1ME2 LINE L1 0 6164 6120 846 111 0 24 chr3 27360616 27360742 -200163836 + FLAM_C SINE Alu 1 123 -10 1977 199 90 37 chr3 27360742 27361240 -200163338 - L1ME2 LINE L1 -44 6120 5589 292 344 65 65 chr3 27361251 27361559 -200163019 - L3 LINE CR1 -795 782 475 993 57 16 0 chr3 27361693 27361815 -200162763 - AluY SINE Alu -18 293 170 469 274 57 99 chr3 27362095 27362358 -200162220 - MIR SINE MIR -8 254 3 189 309 90 64 chr3 27363088 27363276 -200161302 - L2 LINE L2 -214 3058 2866 600 252 88 17 chr3 27363420 27363658 -200160920 + L1MEd LINE L1 3 257 -5862 648 304 47 62 chr3 27363758 27364097 -200160481 + L1MEd LINE L1 440 773 -5346 355 215 63 51 chr3 27364102 27364260 -200160318 + L1MEd LINE L1 931 1090 -5029 343 280 65 0 chr3 27364272 27364379 -200160199 + L2 LINE L2 3195 3308 -5 270 202 211 10 chr3 27364399 27364503 -200160075 + L1MEd LINE L1 1133 1257 -4862 1694 293 48 47 chr3 27364582 27365576 -200159002 + L1ME2 LINE L1 116 1110 -5286 3257 228 110 37 chr3 27365604 27365929 -200158649 + L1ME2 LINE L1 2965 3265 -2950 3237 124 18 6 chr3 27365929 27366437 -200158141 - MER75 DNA T2_type 0 514 1 3257 228 110 37 chr3 27366437 27367548 -200157030 + L1ME2 LINE L1 3265 4506 -1709 2207 148 80 2 chr3 27367715 27368114 -200156464 - MSTB1 LTR MaLR -2 430 1 282 230 72 50 chr3 27368368 27368468 -200156110 + L1MB3 LINE L1 3643 3748 -2398 2240 101 0 3 chr3 27368468 27368764 -200155814 + AluSx SINE Alu 1 295 -17 282 230 72 50 chr3 27368764 27368802 -200155776 + L1MB3 LINE L1 3748 3784 -2362 790 202 118 0 chr3 27368811 27369039 -200155539 + L1MB3 LINE L1 5114 5368 -778 * 2030 161 55 5 chr3 27369037 27369422 -200155156 + L1MB3 LINE L1 5738 6141 -42 1271 171 92 61 chr3 27369422 27369715 -200154863 + AluJo SINE Alu 1 302 -10 399 306 61 10 chr3 27369835 27370031 -200154547 + L1P LINE L1 4852 5057 -1089 453 263 118 59 chr3 27370196 27370740 -200153838 + L1ME2 LINE L1 5383 5958 -275 551 138 21 0 chr3 27370978 27371072 -200153506 - MER58 DNA MER1_type 0 2420 2325 512 198 6 185 chr3 27371067 27371224 -200153354 - MER58 DNA MER1_type -239 147 19 * 659 154 8 32 chr3 27371220 27371343 -200153235 + MER3 DNA MER1_type 8 127 -82 2160 48 44 11 chr3 27371343 27371616 -200152962 - AluY SINE Alu -14 297 16 2268 86 21 0 chr3 27372820 27373111 -200151467 + AluSp SINE Alu 1 297 -16 29 60 0 0 chr3 27373183 27373233 -200151345 + AT_rich Low_complexity Low_complexity 1 50 0 614 279 77 6 chr3 27373918 27374101 -200150477 - MIR SINE MIR 0 262 67 724 208 169 35 chr3 27374249 27374480 -200150098 + MIR SINE MIR 1 262 0 361 74 19 0 chr3 27375167 27375221 -200149357 - Alu SINE Alu -247 55 1 701 274 120 102 chr3 27375480 27375981 -200148597 + L2 LINE L2 2804 3313 0 3050 123 21 58 chr3 27376408 27376656 -200147922 - L1MA6 LINE L1 -160 6140 5884 2522 73 0 0 chr3 27376656 27376958 -200147620 - AluSc SINE Alu 0 309 8 3050 123 21 58 chr3 27376958 27377278 -200147300 - L1MA6 LINE L1 -416 5884 5593 568 208 108 0 chr3 27377278 27377398 -200147180 - AluJb SINE Alu -175 137 5 2007 157 32 8 chr3 27377401 27377939 -200146639 - L1MA6 LINE L1 -691 5609 5066 312 284 24 47 chr3 27378104 27378231 -200146347 + L2 LINE L2 3190 3313 0 195 395 12 0 chr3 27378408 27378494 -200146084 - L2 LINE L2 -674 2640 2554 313 202 161 40 chr3 27378539 27378663 -200145915 - L1MC5 LINE L1 -68 7893 7755 484 188 117 104 chr3 27378664 27378904 -200145674 - L2 LINE L2 -770 2544 2302 674 268 6 11 chr3 27379029 27379208 -200145370 + MER5B DNA MER1_type 1 178 0 520 244 165 37 chr3 27379231 27379395 -200145183 + MER5A DNA MER1_type 3 187 -2 262 350 57 16 chr3 27379395 27379583 -200144995 + L2 LINE L2 2909 3104 -168 7514 30 0 1 chr3 27379956 27381388 -200143190 - L1PA3 LINE L1 0 6155 4717 828 113 0 0 chr3 27381388 27381503 -200143075 - AluY SINE Alu -78 233 119 331 259 211 24 chr3 27382558 27382776 -200141802 - MER102a DNA MER1_type -3 327 71 2068 117 13 7 chr3 27383701 27384000 -200140578 + AluSx SINE Alu 1 301 -11 249 337 21 11 chr3 27384190 27384285 -200140293 + MIR SINE MIR 44 139 -69 30 45 0 0 chr3 27384600 27384644 -200139934 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr3 27385385 27385412 -200139166 + (T)n Simple_repeat Simple_repeat 1 27 0 23 33 0 0 chr3 27387040 27387070 -200137508 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 27388669 27388700 -200135878 + AT_rich Low_complexity Low_complexity 1 31 0 330 258 78 12 chr3 27388856 27389023 -200135555 - L1M4 LINE L1 -3639 2507 2330 270 287 19 9 chr3 27389044 27389152 -200135426 + L1MC/D LINE L1 5703 5811 -1997 212 147 0 0 chr3 27389211 27389245 -200135333 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 28 29 0 0 chr3 27390904 27390939 -200133639 + AT_rich Low_complexity Low_complexity 1 35 0 719 142 9 0 chr3 27390939 27391045 -200133533 - AluJb SINE Alu -20 292 186 1268 218 59 22 chr3 27391253 27391788 -200132790 - MER69 DNA AcHobo -4 2522 248 452 222 0 0 chr3 27391764 27391845 -200132733 - MER69 DNA AcHobo -2444 82 2 * 422 248 20 0 chr3 27392338 27392439 -200132139 - Charlie7 DNA MER1_type -381 2231 2129 26 0 0 0 chr3 27392439 27392465 -200132113 + AT_rich Low_complexity Low_complexity 1 26 0 7189 171 27 17 chr3 27392465 27393708 -200130870 - L1PA14 LINE L1 -2 6159 4871 1631 154 47 68 chr3 27393708 27394091 -200130487 + THE1C LTR MaLR 1 375 0 7189 171 27 17 chr3 27394091 27395101 -200129477 - L1PA14 LINE L1 -1290 4871 3872 4442 176 44 29 chr3 27395101 27396101 -200128477 - L1P LINE L1 -2102 4044 3030 877 242 161 27 chr3 27396218 27396285 -200128293 - Charlie7 DNA MER1_type -607 2005 1948 1888 166 3 13 chr3 27396285 27396592 -200127986 - AluJb SINE Alu -8 304 1 877 242 161 27 chr3 27396592 27396933 -200127645 - Charlie7 DNA MER1_type -664 1948 1542 831 266 47 63 chr3 27396981 27397112 -200127466 + LTR16A LTR ERVL 76 208 -242 4289 135 28 33 chr3 27397112 27397891 -200126687 + L1MA7 LINE L1 5517 6291 0 831 266 47 63 chr3 27397891 27398078 -200126500 + LTR16A LTR ERVL 208 389 -61 1396 163 0 13 chr3 27398105 27398344 -200126234 - AluJb SINE Alu -76 236 1 2349 245 46 24 chr3 27398451 27398643 -200125935 - Charlie7 DNA MER1_type -1134 1478 1292 2760 10 0 0 chr3 27398643 27398944 -200125634 - AluYa5 SINE Alu -10 301 1 2349 245 46 24 chr3 27398944 27399494 -200125084 - Charlie7 DNA MER1_type -1320 1292 720 220 70 47 23 chr3 27399641 27399684 -200124894 + CT-rich Low_complexity Low_complexity 2 45 0 * 384 59 0 0 chr3 27399683 27399734 -200124844 + (TCCCC)n Simple_repeat Simple_repeat 1 51 0 1257 166 100 44 chr3 27399734 27400005 -200124573 - AluSx SINE Alu -26 286 1 768 263 61 76 chr3 27400034 27400479 -200124099 + L1MEd LINE L1 586 1023 -5096 840 172 17 0 chr3 27400742 27400967 -200123611 + CT-rich Low_complexity Low_complexity 1 228 0 1785 151 29 0 chr3 27400971 27401243 -200123335 - AluJb SINE Alu -32 280 1 41 48 0 0 chr3 27401352 27401414 -200123164 + AT_rich Low_complexity Low_complexity 1 62 0 29 0 0 0 chr3 27401462 27401491 -200123087 + AT_rich Low_complexity Low_complexity 1 29 0 212 205 0 0 chr3 27401600 27401639 -200122939 + L3 LINE CR1 400 438 -1139 799 264 97 0 chr3 27401737 27401964 -200122614 - HsTC2c DNA Tc2 -17 712 464 594 227 180 26 chr3 27401985 27402179 -200122399 + MER58A DNA MER1_type 1 224 0 243 0 0 0 chr3 27402483 27402510 -200122068 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 27403220 27403249 -200121329 + AT_rich Low_complexity Low_complexity 1 29 0 481 231 56 28 chr3 27403296 27403439 -200121139 + MER113 DNA MER1_type? 159 305 -216 412 316 37 11 chr3 27403452 27403639 -200120939 + L1MC/D LINE L1 5600 5791 -2017 1781 154 4 11 chr3 27403662 27403942 -200120636 - AluJb SINE Alu -32 280 3 2304 103 0 22 chr3 27404047 27404366 -200120212 - AluSx SINE Alu 0 312 1 783 299 53 0 chr3 27404530 27404774 -200119804 + MIR SINE MIR 6 262 0 264 59 0 0 chr3 27405137 27405171 -200119407 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 2171 84 4 0 chr3 27405171 27405446 -200119132 - AluSp SINE Alu -37 276 1 302 323 0 19 chr3 27405469 27405630 -200118948 - MER112 DNA MER1_type -6 254 97 7681 17 8 0 chr3 27406124 27407521 -200117057 + L1PA3 LINE L1 4812 6215 0 236 297 76 21 chr3 27407670 27407815 -200116763 - L1ME4a LINE L1 -38 6083 5931 517 283 57 65 chr3 27407881 27408217 -200116361 - L1ME4a LINE L1 -496 5625 5293 7051 197 21 7 chr3 27408765 27411148 -200113430 + L1PA15 LINE L1 2 2079 -4770 2469 200 36 12 chr3 27411149 27413321 -200111257 + L1PA15 LINE L1 3771 5889 -979 197 32 0 32 chr3 27413321 27413352 -200111226 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2469 200 36 12 chr3 27413352 27413376 -200111202 + L1PA15 LINE L1 5889 5911 -957 2469 141 20 0 chr3 27413376 27413779 -200110799 + L1PA15 LINE L1 6452 6862 -6 2469 200 36 12 chr3 27413779 27413943 -200110635 + L1PA15 LINE L1 5911 6070 -798 2216 99 30 0 chr3 27413943 27414246 -200110332 + AluSx SINE Alu 1 312 0 2469 200 36 12 chr3 27414246 27414376 -200110202 + L1PA15 LINE L1 6070 6862 -6 855 277 134 3 chr3 27414849 27415178 -200109400 + L2 LINE L2 949 1320 -1994 739 267 108 26 chr3 27415209 27415516 -200109062 + L2 LINE L2 1721 2052 -1262 397 362 71 18 chr3 27415560 27415955 -200108623 + L1M4 LINE L1 4099 4514 -1632 271 299 10 0 chr3 27416037 27416134 -200108444 + L1M4 LINE L1 4513 4610 -1536 713 209 13 67 chr3 27416205 27416430 -200108148 + L1MD3 LINE L1 7779 7991 -4 5200 135 7 15 chr3 27416430 27417524 -200107054 - L1PA16 LINE L1 -1 6480 5379 2800 87 0 13 chr3 27417524 27417904 -200106674 - THE1C LTR MaLR 0 375 1 5200 135 7 15 chr3 27417904 27418404 -200106174 - L1PA16 LINE L1 -1102 5379 4867 2533 150 26 12 chr3 27418404 27418823 -200105755 - MSTB LTR MaLR 0 426 2 7686 192 50 8 chr3 27418844 27418884 -200105694 - MSTB-int LTR MaLR -19 1632 1595 2394 95 3 0 chr3 27418884 27419190 -200105388 - AluSx SINE Alu -5 307 1 7686 192 50 8 chr3 27419190 27420715 -200103863 - MSTB-int LTR MaLR -56 1595 1 2490 160 24 5 chr3 27420715 27421133 -200103445 - MSTB LTR MaLR 0 426 1 732 181 10 60 chr3 27421134 27421333 -200103245 - L1 LINE L1 -1592 4554 4366 11236 123 14 57 chr3 27421333 27424272 -200100306 - L1PA16 LINE L1 -3539 2922 2 195 100 0 0 chr3 27424284 27424314 -200100264 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9147 191 26 19 chr3 27424314 27426144 -200098434 - L1PA15-16 LINE L1 -3062 3787 1924 1945 135 14 17 chr3 27426144 27426441 -200098137 + AluJb SINE Alu 1 296 -16 9147 191 26 19 chr3 27426441 27427135 -200097443 - L1PA15-16 LINE L1 -4925 1924 1236 272 286 16 24 chr3 27427409 27427535 -200097043 + L1ME LINE L1 5687 5811 -310 2324 100 0 22 chr3 27428145 27428456 -200096122 - AluSc SINE Alu -5 304 1 30 27 0 0 chr3 27428684 27428721 -200095857 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr3 27430025 27430050 -200094528 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 15630 27 1 0 chr3 27430066 27432679 -200091899 - L1PA3 LINE L1 -5 6150 3535 426 225 88 8 chr3 27433667 27433806 -200090772 + LTR28 LTR ERV1 1 167 -469 417 201 52 80 chr3 27433823 27433995 -200090583 + LTR1 LTR ERV1 102 415 -554 1646 191 152 101 chr3 27434003 27434640 -200089938 + LTR28 LTR ERV1 351 1020 0 15517 100 22 0 chr3 27435043 27438156 -200086422 - L1PA7 LINE L1 0 6154 2988 737 105 9 0 chr3 27438157 27438262 -200086316 - U6 snRNA snRNA -1 106 1 374 329 124 29 chr3 27438295 27438602 -200085976 - L2 LINE L2 -1069 2245 1910 4698 57 4 147 chr3 27438620 27439423 -200085155 + LTR12 LTR ERV1 1 688 0 13837 105 18 11 chr3 27439423 27442452 -200082126 + HERV9 LTR ERV1 1 3139 -5260 6021 87 12 8 chr3 27442459 27443321 -200081257 + HERV9 LTR ERV1 4080 4944 -3455 1831 105 64 38 chr3 27443322 27444019 -200080559 + Harlequin LTR ERV1 713 4405 -3380 1001 102 0 0 chr3 27443996 27444153 -200080425 + Harlequin LTR ERV1 1584 1740 -5156 * 5301 96 4 0 chr3 27444151 27444920 -200079658 + Harlequin LTR ERV1 7626 8397 -2 5545 59 0 34 chr3 27444923 27445635 -200078943 + LTR12 LTR ERV1 1 688 0 248 377 117 23 chr3 27445842 27446142 -200078436 - L2 LINE L2 -1634 1680 1353 721 183 15 0 chr3 27446185 27446316 -200078262 + AluJo/FLAM SINE Alu 1 133 -169 1278 115 0 11 chr3 27446319 27446502 -200078076 + AluY SINE Alu 1 181 -130 900 186 13 0 chr3 27446663 27446819 -200077759 - AluJb SINE Alu -22 290 133 347 226 195 18 chr3 27447480 27447532 -200077046 - MER5A DNA MER1_type -1 188 147 2261 109 3 0 chr3 27447532 27447834 -200076744 + AluSp SINE Alu 1 303 -10 347 226 195 18 chr3 27447834 27447906 -200076672 - MER5A DNA MER1_type -42 147 31 1562 168 3 67 chr3 27447991 27448306 -200076272 + AluJb SINE Alu 14 308 -4 2164 104 0 26 chr3 27448441 27448748 -200075830 - AluSq SINE Alu -10 303 5 267 367 39 16 chr3 27448786 27448914 -200075664 + MIR SINE MIR 67 197 -65 217 304 26 9 chr3 27449890 27450005 -200074573 + T-rich Low_complexity Low_complexity 2 118 0 1106 152 119 0 chr3 27450596 27450806 -200073772 + MER46A DNA MER2_type 1 235 -1 2329 64 14 14 chr3 27450829 27451124 -200073454 + AluY SINE Alu 1 295 -16 369 313 131 23 chr3 27451474 27451688 -200072890 + MIR SINE MIR 13 249 -13 23 78 0 0 chr3 27451807 27451858 -200072720 + AT_rich Low_complexity Low_complexity 1 51 0 319 239 0 22 chr3 27452687 27452779 -200071799 + L1ME2 LINE L1 5944 6033 -131 885 202 64 0 chr3 27452779 27452967 -200071611 + MER20 DNA MER1_type 1 200 -19 324 211 48 0 chr3 27452973 27453077 -200071501 + L1ME2 LINE L1 6047 6155 -9 243 0 0 0 chr3 27453192 27453219 -200071359 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1889 294 142 42 chr3 27453716 27454750 -200069828 - L2 LINE L2 0 3313 2384 1987 143 0 14 chr3 27454750 27455043 -200069535 - AluJo SINE Alu -23 289 1 1889 294 142 42 chr3 27455043 27455329 -200069249 - L2 LINE L2 -929 2384 2128 1661 158 53 14 chr3 27455329 27455613 -200068965 + AluJb SINE Alu 1 295 -17 1889 294 142 42 chr3 27455613 27455997 -200068581 - L2 LINE L2 -1185 2128 1454 1280 192 7 97 chr3 27456159 27456467 -200068111 + AluJb SINE Alu 1 280 -32 2182 126 7 0 chr3 27457118 27457420 -200067158 + AluSx SINE Alu 2 305 -7 201 200 20 20 chr3 27457480 27457530 -200067048 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2470 51 0 0 chr3 27458051 27458345 -200066233 + AluY SINE Alu 1 294 -17 197 208 104 0 chr3 27459614 27459662 -200064916 - L2 LINE L2 0 3272 3220 186 293 75 47 chr3 27461000 27461106 -200063472 - MIR SINE MIR -14 248 140 290 366 108 39 chr3 27462455 27462734 -200061844 + L2 LINE L2 2919 3216 -56 1000 220 99 0 chr3 27463103 27463326 -200061252 + MER45B DNA AcHobo 2 246 -794 1764 157 18 3 chr3 27463424 27463710 -200060868 - AluSx SINE Alu -22 290 1 682 207 0 0 chr3 27463716 27463832 -200060746 + MER45B DNA AcHobo 488 603 -437 395 234 0 0 chr3 27463832 27463909 -200060669 + MER45B DNA AcHobo 964 1040 0 347 247 25 0 chr3 27464222 27464303 -200060275 - MIR SINE MIR -174 88 6 1410 191 32 50 chr3 27464838 27465121 -200059457 - AluJo SINE Alu -32 280 3 24 53 0 0 chr3 27465131 27465169 -200059409 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 27465276 27465301 -200059277 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 27465647 27465668 -200058910 + (T)n Simple_repeat Simple_repeat 1 21 0 468 261 197 18 chr3 27465721 27465939 -200058639 - MIR SINE MIR -1 261 5 266 269 0 0 chr3 27466331 27466398 -200058180 + MLT1C LTR MaLR 196 262 -205 867 221 107 12 chr3 27466398 27466642 -200057936 + MLT1C LTR MaLR 201 467 0 3162 171 39 24 chr3 27466661 27466737 -200057841 + L1MD2 LINE L1 5254 5327 -1032 2207 110 7 7 chr3 27466737 27467045 -200057533 + AluSc SINE Alu 1 308 -1 3162 171 39 24 chr3 27467045 27467640 -200056938 + L1MD2 LINE L1 5327 5935 -424 2185 89 28 3 chr3 27467694 27467985 -200056593 + AluSx SINE Alu 15 312 0 643 81 35 0 chr3 27468101 27468188 -200056390 - HY4 scRNA scRNA -3 90 1 1600 223 61 57 chr3 27468191 27468547 -200056031 - L1MC4 LINE L1 -135 7907 7547 1452 193 15 8 chr3 27468547 27468812 -200055766 + AluSq SINE Alu 31 297 -16 1600 223 61 57 chr3 27468812 27468980 -200055598 - L1MC4 LINE L1 -495 7547 7381 1204 163 12 0 chr3 27469115 27469423 -200055155 - L1PA14 LINE L1 -1 6160 5798 480 252 38 15 chr3 27469415 27469546 -200055032 + L1MD2 LINE L1 5925 6058 -301 * 4502 178 29 7 chr3 27469578 27470543 -200054035 - L1MB8 LINE L1 -5 6173 5190 2126 129 0 13 chr3 27470543 27470852 -200053726 - AluSq SINE Alu -8 305 1 470 231 103 0 chr3 27470859 27470976 -200053602 - FLAM_A SINE Alu -3 130 2 552 193 0 0 chr3 27471078 27471192 -200053386 - L1MB8 LINE L1 -1025 5121 5008 992 204 70 70 chr3 27471197 27471482 -200053096 + L1MD2 LINE L1 6067 6351 -8 1362 205 69 11 chr3 27472079 27472454 -200052124 + LTR37A LTR ERV1 30 426 0 195 338 69 46 chr3 27472528 27472744 -200051834 - L2 LINE L2 -101 3212 2992 399 321 147 36 chr3 27472851 27473356 -200051222 - L2 LINE L2 -2227 1087 527 196 368 0 0 chr3 27473371 27473439 -200051139 - L2 LINE L2 -2902 412 345 352 279 56 62 chr3 27473494 27473867 -200050711 - L1P LINE L1 -834 5312 4942 372 194 14 0 chr3 27474102 27474174 -200050404 + MIR SINE MIR 81 153 -109 32 101 0 0 chr3 27474178 27474287 -200050291 + AT_rich Low_complexity Low_complexity 1 109 0 421 329 127 32 chr3 27474610 27475289 -200049289 - L2 LINE L2 -2 3270 2533 211 284 174 9 chr3 27475324 27475433 -200049145 + L3b LINE CR1 1212 1338 -245 2434 168 68 41 chr3 27475732 27476292 -200048286 + MER90 LTR ERV1 1 575 0 1419 160 80 43 chr3 27476650 27476950 -200047628 - MER44D DNA MER2_type -5 604 24 2244 102 3 0 chr3 27477908 27478202 -200046376 - AluSx SINE Alu -12 300 6 24 0 0 0 chr3 27478223 27478247 -200046331 + AT_rich Low_complexity Low_complexity 1 24 0 1152 163 0 25 chr3 27478473 27478669 -200045909 - AluJo SINE Alu -41 271 81 874 231 185 57 chr3 27478722 27478861 -200045717 - L1MC4 LINE L1 0 8042 7922 423 0 0 0 chr3 27478861 27478908 -200045670 + (CA)n Simple_repeat Simple_repeat 2 48 0 874 231 185 57 chr3 27478908 27479227 -200045351 - L1MC4 LINE L1 -120 7922 7525 264 271 80 33 chr3 27479232 27479383 -200045195 + Charlie7 DNA MER1_type 2454 2611 -1 704 128 38 8 chr3 27479570 27479703 -200044875 + AluSg/x SINE Alu 166 302 -10 1333 79 6 0 chr3 27479707 27479884 -200044694 + AluSq SINE Alu 128 305 -8 303 381 8 0 chr3 27480013 27480131 -200044447 + L2 LINE L2 3154 3272 0 372 160 0 0 chr3 27530250 27530350 -199994228 + G-rich Low_complexity Low_complexity 1 100 0 30203 34 2 0 chr3 27530392 27535032 -199989546 + L1PA3 LINE L1 1507 6154 -1 6858 118 5 11 chr3 27535835 27537254 -199987324 + L1MA1 LINE L1 4887 6297 -5 306 306 139 0 chr3 27537360 27537468 -199987110 - L2 LINE L2 -1 3312 3190 245 260 170 10 chr3 27537725 27537825 -199986753 - MIR SINE MIR -46 216 101 1802 191 25 0 chr3 27537972 27538401 -199986177 - MLT2B1 LTR ERVL 0 554 3 1476 318 26 61 chr3 27538476 27539356 -199985222 - L2 LINE L2 -83 3230 2387 386 332 58 31 chr3 27539641 27539933 -199984645 - LTR16C LTR ERVL -90 401 102 1671 204 0 10 chr3 27540674 27540968 -199983610 + AluJo SINE Alu 1 291 -21 244 196 208 40 chr3 27541288 27541461 -199983117 + L1MC5 LINE L1 7664 7865 -96 246 62 0 0 chr3 27542248 27542280 -199982298 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1040 199 11 0 chr3 27543083 27543269 -199981309 + MER5A DNA MER1_type 1 188 -1 864 206 78 0 chr3 27543555 27543735 -199980843 - MER3 DNA MER1_type 0 209 16 870 140 0 15 chr3 27543739 27543875 -199980703 - AluJo SINE Alu -178 134 1 830 203 0 0 chr3 27543956 27544109 -199980469 + MER63A DNA MER1_type 58 210 0 825 260 63 4 chr3 27546697 27546951 -199977627 + MLT1H LTR MaLR 23 291 -258 424 304 137 34 chr3 27548417 27548621 -199975957 + MIR SINE MIR 36 260 -2 1769 177 47 113 chr3 27548747 27548857 -199975721 + L1MC4 LINE L1 7441 7557 -485 2481 72 3 0 chr3 27548857 27549162 -199975416 - AluSp SINE Alu -6 307 2 1769 177 47 113 chr3 27549162 27549513 -199975065 + L1MC4 LINE L1 7557 7849 -193 2099 119 19 19 chr3 27549513 27549825 -199974753 - AluSx SINE Alu 0 312 1 1769 177 47 113 chr3 27549825 27550007 -199974571 + L1MC4 LINE L1 7849 8042 0 390 284 46 126 chr3 27550043 27550328 -199974250 + L2 LINE L2 3009 3270 -2 1933 143 38 35 chr3 27552590 27552962 -199971616 - THE1C LTR MaLR 0 375 3 251 350 82 66 chr3 27553090 27553393 -199971185 + L2 LINE L2 2576 2883 -431 2325 93 3 13 chr3 27553419 27553721 -199970857 - AluSp SINE Alu -14 299 1 236 196 0 0 chr3 27553909 27553965 -199970613 - L1MC4 LINE L1 -1344 6698 6643 3190 58 5 16 chr3 27554096 27554543 -199970035 - L1P LINE L1 -5050 1096 655 381 326 65 28 chr3 27554668 27554970 -199969608 - MLT1J2 LTR MaLR -66 380 65 1185 247 90 14 chr3 27555696 27556052 -199968526 + MSTD LTR MaLR 5 387 -9 1053 310 26 69 chr3 27556125 27556758 -199967820 - ERVL LTR ERVL -323 5331 4767 2078 153 19 25 chr3 27556758 27557125 -199967453 - MLT1A1 LTR MaLR 0 365 1 1053 310 26 69 chr3 27557125 27557276 -199967302 - ERVL LTR ERVL -887 4767 4611 342 289 126 15 chr3 27557447 27557582 -199966996 - MIR3 SINE MIR -32 176 27 246 226 0 0 chr3 27557803 27557865 -199966713 + L2 LINE L2 2996 3057 -215 230 295 39 0 chr3 27558180 27558258 -199966320 + L2 LINE L2 2303 2383 -931 22 0 0 0 chr3 27558343 27558365 -199966213 + AT_rich Low_complexity Low_complexity 1 22 0 475 279 28 0 chr3 27558566 27558745 -199965833 + Charlie8 DNA MER1_type 93 276 -2141 217 315 62 15 chr3 27558846 27558976 -199965602 + L2 LINE L2 2929 3064 -208 1774 176 70 40 chr3 27559257 27559701 -199964877 - LTR2B LTR ERV1 0 490 34 33440 63 2 9 chr3 27559722 27564830 -199959748 - Harlequin LTR ERV1 0 6896 1813 8165 62 74 107 chr3 27564813 27566278 -199958300 - Harlequin LTR ERV1 -5480 1416 1 * 1733 180 77 40 chr3 27566278 27566722 -199957856 - LTR2B LTR ERV1 0 490 31 780 286 18 13 chr3 27567028 27567255 -199957323 + MIR SINE MIR 35 262 0 829 241 127 0 chr3 27567399 27567611 -199956967 + MIR SINE MIR 3 241 -21 498 250 42 30 chr3 27567649 27567817 -199956761 - MIR SINE MIR -48 214 45 715 357 31 3 chr3 27567824 27568174 -199956404 + L2 LINE L2 2242 2601 -713 271 283 26 79 chr3 27569095 27569247 -199955331 + MIR3 SINE MIR 46 189 -19 436 230 0 0 chr3 27569454 27569554 -199955024 + MER103 DNA DNA 22 121 -45 225 261 33 43 chr3 27569704 27569796 -199954782 - L2 LINE L2 -8 3305 3215 2290 96 7 0 chr3 27570208 27570500 -199954078 - AluSg SINE Alu -16 294 1 407 289 100 17 chr3 27570564 27570744 -199953834 - MIR SINE MIR -56 206 12 567 282 29 0 chr3 27570769 27570939 -199953639 - MER63A DNA MER1_type -35 175 1 234 384 103 34 chr3 27571266 27571412 -199953166 + L2 LINE L2 3115 3270 -2 32 26 0 0 chr3 27571950 27571989 -199952589 + AT_rich Low_complexity Low_complexity 1 39 0 492 230 170 15 chr3 27572101 27572236 -199952342 + MER5A DNA MER1_type 27 182 -7 795 259 70 73 chr3 27572979 27573523 -199951055 + MER34 LTR ERV1 1 542 0 280 222 0 0 chr3 27573571 27573625 -199950953 + GA-rich Low_complexity Low_complexity 1 54 0 1920 118 59 7 chr3 27574423 27574720 -199949858 - AluSg SINE Alu 0 311 1 2533 70 0 6 chr3 27574993 27575306 -199949272 - AluY SINE Alu 0 311 1 1253 277 32 41 chr3 27575599 27576036 -199948542 - MLT1G LTR MaLR -95 495 63 2579 144 12 2 chr3 27576037 27576467 -199948111 + MER57B LTR ERV1 1 434 0 3911 147 19 14 chr3 27576467 27577135 -199947443 + MER57B-int LTR ERV1 1 672 -6865 3496 120 54 0 chr3 27577134 27577675 -199946903 + MER57B-int LTR ERV1 290 859 -5087 * 4235 162 59 4 chr3 27577658 27578437 -199946141 + MER57B-int LTR ERV1 1550 2371 -5166 921 121 11 22 chr3 27578436 27578611 -199945967 + MER57B-int LTR ERV1 1503 2014 -3932 * 2801 118 34 36 chr3 27578587 27578928 -199945650 + MER57B-int LTR ERV1 2167 2507 -5262 2314 107 3 3 chr3 27578928 27579237 -199945341 + AluY SINE Alu 1 309 -2 2801 118 34 36 chr3 27579237 27579526 -199945052 + MER57B-int LTR ERV1 2507 4065 -3704 1384 109 0 0 chr3 27579528 27579711 -199944867 + AluSg/x SINE Alu 129 311 -1 4401 148 65 47 chr3 27579711 27580834 -199943744 + MER57B-int LTR ERV1 2491 4041 -1720 * 11886 98 94 65 chr3 27580828 27581369 -199943209 + MER57B-int LTR ERV1 5310 5834 -1703 2271 98 20 7 chr3 27581369 27581675 -199942903 - AluSg SINE Alu 0 310 1 11886 98 94 65 chr3 27581675 27582702 -199941876 + MER57B-int LTR ERV1 5834 6960 -577 2085 115 11 0 chr3 27582702 27583016 -199941562 - AluSx SINE Alu 0 317 1 11886 98 94 65 chr3 27583016 27583611 -199940967 + MER57B-int LTR ERV1 6960 7537 0 2642 142 21 0 chr3 27583611 27584033 -199940545 + MER57B LTR ERV1 1 431 -3 290 333 40 33 chr3 27584849 27584999 -199939579 - MIR SINE MIR -81 181 31 2661 278 107 29 chr3 27585396 27586518 -199938060 - L2 LINE L2 -399 2915 1706 346 167 11 11 chr3 27586535 27586625 -199937953 + (TA)n Simple_repeat Simple_repeat 1 90 0 369 0 0 0 chr3 27586627 27586668 -199937910 + (TG)n Simple_repeat Simple_repeat 2 42 0 847 163 90 6 chr3 27586700 27586878 -199937700 - MER50 LTR ERV1 -19 715 523 588 269 126 31 chr3 27586942 27587332 -199937246 - MER50 LTR ERV1 -298 436 10 495 308 147 35 chr3 27587399 27587766 -199936812 - L1MC4 LINE L1 -547 7495 7088 5767 130 11 8 chr3 27587848 27589009 -199935569 + L1MA3 LINE L1 5062 6226 -79 335 145 16 0 chr3 27589009 27589071 -199935507 - AluSp/q SINE Alu -3 300 238 1305 146 5 15 chr3 27589072 27589277 -199935301 + AluSg/x SINE Alu 80 282 -30 219 103 0 0 chr3 27589281 27589320 -199935258 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr3 27589351 27589380 -199935198 + AT_rich Low_complexity Low_complexity 1 29 0 1316 221 77 83 chr3 27589385 27590008 -199934570 + LTR28 LTR ERV1 402 1020 0 675 260 30 24 chr3 27590089 27590488 -199934090 - L1MEc LINE L1 -4844 1371 961 1276 201 156 76 chr3 27590489 27591177 -199933401 + LTR1B LTR ERV1 1 743 -83 3083 243 44 15 chr3 27591304 27591852 -199932726 - L1MEc LINE L1 -5427 969 383 1885 156 6 16 chr3 27591852 27592167 -199932411 + AluJb SINE Alu 1 312 0 3083 243 44 15 chr3 27592167 27592526 -199932052 - L1MEc LINE L1 -6013 383 36 857 176 0 0 chr3 27593793 27593924 -199930654 - FLAM_C SINE Alu -12 131 1 271 310 0 0 chr3 27595188 27595259 -199929319 - MIR SINE MIR -136 126 56 256 303 13 0 chr3 27595576 27595652 -199928926 - MIR SINE MIR -116 146 70 456 306 110 14 chr3 27596204 27596413 -199928165 + MIR SINE MIR 15 243 -19 191 240 100 0 chr3 27596479 27596529 -199928049 - MIR SINE MIR -62 146 92 250 274 0 65 chr3 27596710 27596772 -199927806 + MIR SINE MIR 67 125 -83 436 119 0 0 chr3 27596777 27596836 -199927742 + AluSc SINE Alu 230 288 -21 347 269 69 35 chr3 27596941 27597086 -199927492 + L2 LINE L2 3160 3309 -4 2230 127 0 6 chr3 27598370 27598684 -199925894 + AluSq SINE Alu 1 312 -1 244 244 105 0 chr3 27598699 27598785 -199925793 - L1ME LINE L1 -302 5819 5725 268 283 33 20 chr3 27598867 27599019 -199925559 - HAL1b LINE L1 -7 1341 1188 206 276 52 0 chr3 27599146 27599204 -199925374 - MER5B DNA MER1_type -9 169 109 1644 218 79 62 chr3 27601793 27602377 -199922201 + MLT1G1 LTR MaLR 2 595 0 331 368 36 45 chr3 27602559 27602779 -199921799 + L2 LINE L2 3035 3252 -20 342 358 34 17 chr3 27603189 27603368 -199921210 - MER5A DNA MER1_type 0 189 8 758 259 126 43 chr3 27604635 27605055 -199919523 - LTR16A1 LTR ERVL -2 455 1 211 219 0 0 chr3 27606040 27606081 -199918497 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 432 187 30 18 chr3 27606180 27606306 -199918272 - L1ME2 LINE L1 -2 6168 6040 1054 208 59 44 chr3 27606339 27606680 -199917898 - L1ME2 LINE L1 -109 6055 5710 860 123 23 0 chr3 27606879 27607009 -199917569 - FLAM_C SINE Alu 0 133 1 28 86 0 0 chr3 27607972 27608042 -199916536 + AT_rich Low_complexity Low_complexity 1 70 0 1533 186 125 6 chr3 27610524 27610835 -199913743 + MER7A DNA MER2_type 1 346 0 261 0 0 0 chr3 27612202 27612231 -199912347 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 273 29 0 0 chr3 27612230 27612264 -199912314 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 74 0 0 chr3 27612269 27612296 -199912282 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 568 282 45 50 chr3 27613932 27614226 -199910352 - MER102b DNA MER1_type -5 336 33 267 305 79 73 chr3 27616069 27616246 -199908332 + MIR SINE MIR 59 236 -26 603 215 156 32 chr3 27616288 27616474 -199908104 - MIR SINE MIR -6 256 48 523 269 136 23 chr3 27616559 27616949 -199907629 - L1ME4a LINE L1 -153 5968 5535 273 301 125 91 chr3 27616971 27617147 -199907431 - MIR3 SINE MIR -9 199 18 210 196 0 20 chr3 27617504 27617555 -199907023 + A-rich Low_complexity Low_complexity 5 54 0 529 323 47 5 chr3 27618485 27618677 -199905901 + MIR SINE MIR 1 200 -62 209 309 61 42 chr3 27618748 27618913 -199905665 - L2 LINE L2 -1217 2097 1930 267 362 45 20 chr3 27620742 27620941 -199903637 + Charlie8 DNA MER1_type 43 246 -2171 6120 110 4 4 chr3 27620984 27622435 -199902143 - L1PA13 LINE L1 -1 6162 4705 31575 106 12 54 chr3 27622437 27628862 -199895716 - L1PA7 LINE L1 -3 6151 12 4190 187 13 6 chr3 27628871 27629717 -199894861 - L1PA13 LINE L1 -1432 4714 3863 381 335 62 22 chr3 27631056 27631280 -199893298 + MIR SINE MIR 20 252 -10 561 314 76 13 chr3 27631318 27631738 -199892840 - MLT1L LTR MaLR -14 601 90 2360 78 0 16 chr3 27632496 27632804 -199891774 - AluY SINE Alu -8 303 1 3495 185 25 20 chr3 27634072 27634715 -199889863 + L1MA2 LINE L1 16 661 -6904 * 8379 187 68 52 chr3 27634707 27634800 -199889778 + L1MA2 LINE L1 2131 2221 -5502 2404 84 3 3 chr3 27634800 27635109 -199889469 + AluSg SINE Alu 1 309 -1 8379 187 68 52 chr3 27635109 27638678 -199885900 + L1MA2 LINE L1 2221 5733 -1990 2947 80 78 2 chr3 27638678 27639046 -199885532 + MLT2A1 LTR ERVL 1 405 -39 198 0 0 0 chr3 27639046 27639068 -199885510 + (TA)n Simple_repeat Simple_repeat 2 23 0 2947 80 78 2 chr3 27639068 27639112 -199885466 + MLT2A1 LTR ERVL 405 444 0 768 108 122 29 chr3 27639112 27639206 -199885372 + MLT2A1 LTR ERVL 293 406 -38 654 49 0 0 chr3 27639206 27639288 -199885290 + (TA)n Simple_repeat Simple_repeat 2 83 0 768 108 122 29 chr3 27639288 27639332 -199885246 + MLT2A1 LTR ERVL 406 444 0 8379 187 68 52 chr3 27639332 27640160 -199884418 + L1MA2 LINE L1 5733 6547 -1176 1937 158 10 3 chr3 27640160 27640457 -199884121 + AluJb SINE Alu 1 299 -13 8379 187 68 52 chr3 27640457 27641223 -199883355 + L1MA2 LINE L1 6547 7605 -118 2281 119 22 17 chr3 27641223 27641584 -199882994 + THE1C LTR MaLR 1 363 -12 826 98 25 0 chr3 27641589 27641711 -199882867 + L1MA2 LINE L1 7599 7723 0 432 338 65 29 chr3 27642178 27642456 -199882122 + LTR16C LTR ERVL 202 489 -2 228 260 78 26 chr3 27642562 27642639 -199881939 - MIR SINE MIR -131 131 51 240 200 83 161 chr3 27642738 27642918 -199881660 - LTR27 LTR ERV1 0 636 471 * 1577 163 122 11 chr3 27642916 27643262 -199881316 - LTR28 LTR ERV1 -675 345 1 15246 156 40 30 chr3 27643264 27648191 -199876387 - LTR28-int LTR ERV1 -1 6995 632 1041 129 138 45 chr3 27648193 27648417 -199876161 - LTR8A LTR ERV1 -481 246 2 1850 193 58 13 chr3 27648907 27649286 -199875292 + MSTD LTR MaLR 1 396 0 330 366 37 15 chr3 27649424 27649558 -199875020 - L2 LINE L2 -7 3265 3129 234 0 0 0 chr3 27650807 27650833 -199873745 + (T)n Simple_repeat Simple_repeat 1 26 0 249 227 86 125 chr3 27652090 27652218 -199872360 + MIR SINE MIR 5 127 -135 212 373 161 7 chr3 27652533 27652905 -199871673 + L2 LINE L2 1297 1737 -1577 3744 90 4 6 chr3 27652905 27653417 -199871161 - MER9 LTR ERVK 0 511 1 212 373 161 7 chr3 27653417 27653449 -199871129 + L2 LINE L2 1737 1763 -1551 590 290 160 31 chr3 27653485 27653778 -199870800 - MER102b DNA MER1_type 0 341 11 352 186 339 8 chr3 27653931 27654049 -199870529 - MER5A DNA MER1_type -29 160 4 371 319 59 15 chr3 27655178 27655313 -199869265 - MIR SINE MIR -108 154 14 1940 56 144 7 chr3 27655496 27655766 -199868812 - AluY SINE Alu -3 308 2 722 275 39 0 chr3 27655835 27656017 -199868561 - MER5A DNA MER1_type 0 189 1 454 261 35 45 chr3 27656246 27656445 -199868133 - L1ME LINE L1 -464 5657 5461 22 0 0 0 chr3 27658394 27658416 -199866162 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 27659100 27659134 -199865444 + AT_rich Low_complexity Low_complexity 1 34 0 269 145 58 29 chr3 27659136 27659205 -199865373 - MER4-int LTR ERV1 -4975 1623 1553 3239 91 11 7 chr3 27659206 27659669 -199864909 - L1PA11 LINE L1 -2 6172 5708 5048 195 47 16 chr3 27660026 27661402 -199863176 - L1MC1 LINE L1 -15 6598 5187 2080 166 66 20 chr3 27661395 27661983 -199862595 - L1MC1 LINE L1 -4166 2260 1554 * 878 185 82 108 chr3 27661983 27662413 -199862165 - MLT1A1 LTR MaLR 0 365 1 623 150 8 53 chr3 27662414 27662547 -199862031 - L1MC1 LINE L1 -4869 1557 1431 2182 107 18 18 chr3 27662547 27662884 -199861694 + THE1C LTR MaLR 1 337 -38 7591 149 19 51 chr3 27662889 27664348 -199860230 - L1MC1 LINE L1 -4995 1431 21 1669 159 18 18 chr3 27664640 27664917 -199859661 - AluJo SINE Alu -19 293 17 259 269 52 30 chr3 27665200 27665334 -199859244 - L1M4 LINE L1 -3141 3005 2869 29 78 0 0 chr3 27665361 27665425 -199859153 + AT_rich Low_complexity Low_complexity 1 64 0 769 229 38 0 chr3 27665471 27665628 -199858950 + FRAM SINE Alu 11 173 -3 362 252 62 55 chr3 27665656 27665930 -199858648 - L1M4 LINE L1 -3594 2552 2277 2044 113 0 63 chr3 27666037 27666355 -199858223 - AluSc SINE Alu -11 298 1 23 33 0 0 chr3 27666357 27666387 -199858191 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 27666573 27666629 -199857949 + (TA)n Simple_repeat Simple_repeat 2 57 0 1474 207 4 4 chr3 27666828 27667103 -199857475 + AluJo SINE Alu 11 285 -27 1519 147 58 0 chr3 27667268 27667526 -199857052 + MER50 LTR ERV1 1 273 -461 380 293 167 0 chr3 27670177 27670351 -199854227 + L2 LINE L2 2598 2800 -514 373 212 104 39 chr3 27670362 27670556 -199854022 - MER58 DNA MER1_type -1 2419 10 485 331 60 62 chr3 27670572 27671004 -199853574 + L2 LINE L2 2815 3245 -68 380 283 118 72 chr3 27671605 27671925 -199852653 + L1ME4a LINE L1 5655 5995 -126 2316 123 30 6 chr3 27671925 27672291 -199852287 - THE1C LTR MaLR 0 375 1 380 283 118 72 chr3 27672291 27672345 -199852233 + L1ME4a LINE L1 5995 6045 -76 27 29 0 0 chr3 27672375 27672409 -199852169 + AT_rich Low_complexity Low_complexity 1 34 0 426 20 0 0 chr3 27674846 27674897 -199849681 + (CA)n Simple_repeat Simple_repeat 1 51 0 1370 174 41 10 chr3 27675270 27675563 -199849015 + L1MA9 LINE L1 5989 6290 -22 21 0 0 0 chr3 27675636 27675657 -199848921 + AT_rich Low_complexity Low_complexity 1 21 0 5673 177 32 18 chr3 27676801 27677828 -199846750 + L1PA13 LINE L1 1 1042 -5745 9553 229 19 31 chr3 27677836 27679455 -199845123 + L1PA13 LINE L1 1706 3331 -3466 401 41 0 0 chr3 27679455 27679504 -199845074 + MADE1 DNA Mariner 1 49 -31 9553 229 19 31 chr3 27679504 27680430 -199844148 + L1PA13 LINE L1 3331 4267 -2530 814 163 52 77 chr3 27680456 27680689 -199843889 + L1PA16 LINE L1 5940 6166 0 929 216 10 0 chr3 27680815 27681014 -199843564 - L1MB3 LINE L1 -113 6070 5870 4448 126 5 23 chr3 27681716 27682462 -199842116 - L1PA15 LINE L1 -7 6158 5426 845 208 25 95 chr3 27684428 27684669 -199839909 + MER58A DNA MER1_type 1 224 0 247 326 59 112 chr3 27684673 27685146 -199839432 - L2 LINE L2 0 3272 2825 424 291 127 14 chr3 27685975 27686195 -199838383 - MIR SINE MIR 0 262 18 434 158 0 0 chr3 27686680 27686762 -199837816 - L1 LINE L1 -921 6644 6563 17324 182 56 32 chr3 27686863 27689736 -199834842 - L1 LINE L1 -2671 4894 1857 207 0 0 0 chr3 27689736 27689759 -199834819 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 17324 182 56 32 chr3 27689759 27691643 -199832935 - L1 LINE L1 -5708 1857 19 2076 139 0 26 chr3 27692362 27692707 -199831871 - L1PA16 LINE L1 -9 6157 5822 1187 126 0 11 chr3 27693189 27693394 -199831184 - L1PA15 LINE L1 -199 5962 5769 13425 210 30 14 chr3 27693403 27697790 -199826788 - L1PB2 LINE L1 -2 6865 2357 705 272 50 7 chr3 27698148 27698427 -199826151 + L1 LINE L1 3185 3475 -2671 434 158 0 0 chr3 27698528 27698610 -199825968 + L1 LINE L1 5144 5225 -921 397 291 97 11 chr3 27699095 27699270 -199825308 + MIR SINE MIR 18 207 -55 15385 162 56 5 chr3 27699438 27702440 -199822138 - L1PBa LINE L1 -3705 3157 3 618 198 9 8 chr3 27702449 27702580 -199821998 - L1P5 LINE L1 -374 7220 7089 347 174 23 0 chr3 27702568 27702654 -199821924 - L1P5 LINE L1 -961 6623 6536 * 8500 251 13 6 chr3 27702673 27705026 -199819552 - L1P5 LINE L1 -1905 5679 3311 502 204 27 41 chr3 27705025 27705162 -199819416 - L1P5 LINE L1 -4681 2900 2764 * 607 168 0 53 chr3 27705162 27705275 -199819303 - U6 snRNA snRNA 0 107 1 8840 210 30 9 chr3 27705277 27708036 -199816542 - L1P4 LINE L1 -342 6527 3711 1199 259 11 6 chr3 27708041 27708396 -199816182 - L1P4 LINE L1 -3495 3354 2998 * 9329 151 106 7 chr3 27708395 27710088 -199814490 - L1P4 LINE L1 -4095 2754 893 276 340 21 56 chr3 27710131 27710275 -199814303 - MER91C DNA MER1_type 0 140 2 566 258 31 13 chr3 27710569 27710728 -199813850 + MIR SINE MIR 74 235 -27 910 198 43 77 chr3 27710810 27711342 -199813236 - L1MDa LINE L1 -3694 2846 2329 1119 127 6 6 chr3 27711625 27711791 -199812787 - AluSg/x SINE Alu -13 299 134 2285 109 0 0 chr3 27711791 27712093 -199812485 - AluSc SINE Alu -7 302 1 395 228 53 0 chr3 27712324 27712438 -199812140 - L1ME3A LINE L1 -223 5947 5828 391 277 34 6 chr3 27712434 27712649 -199811929 + L1M2 LINE L1 5282 5517 -653 * 952 68 0 0 chr3 27712853 27712971 -199811607 - L1PA7 LINE L1 -8 6146 6029 378 327 171 18 chr3 27712973 27713254 -199811324 + L1ME3A LINE L1 5513 5836 -334 198 167 0 0 chr3 27713751 27713787 -199810791 + T-rich Low_complexity Low_complexity 1 36 0 253 212 15 45 chr3 27714604 27714670 -199809908 + MIR3 SINE MIR 104 167 -41 186 43 0 0 chr3 27714722 27714745 -199809833 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1763 86 6 147 chr3 27714746 27715073 -199809505 - AluSp SINE Alu -32 281 1 204 275 0 46 chr3 27715685 27715794 -199808784 + CT-rich Low_complexity Low_complexity 5 108 0 229 293 0 61 chr3 27715822 27715904 -199808674 + L2 LINE L2 3231 3307 -6 358 197 56 0 chr3 27716084 27716155 -199808423 + MLT1F LTR MaLR 3 77 -465 304 303 55 9 chr3 27716161 27716270 -199808308 + MLT1F LTR MaLR 28 141 -401 218 268 73 12 chr3 27716400 27716482 -199808096 + MIR SINE MIR 58 144 -64 2351 85 9 6 chr3 27716803 27717133 -199807445 - L1PB1 LINE L1 0 6151 5821 6349 212 5 6 chr3 27717133 27718569 -199806009 - L1 LINE L1 -971 5891 4457 4398 140 18 6 chr3 27718565 27721458 -199803120 - L1PBa LINE L1 -3097 3765 636 * 1105 160 5 0 chr3 27721463 27721657 -199802921 - L1PBa LINE L1 -6668 195 1 213 94 0 0 chr3 27722277 27722309 -199802269 + (ATG)n Simple_repeat Simple_repeat 3 34 0 814 171 18 6 chr3 27723697 27723861 -199800717 - L1MA10 LINE L1 0 6334 6169 207 0 0 0 chr3 27723985 27724008 -199800570 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 386 302 0 10 chr3 27724015 27724111 -199800467 - L2 LINE L2 -22 3291 3197 253 128 0 0 chr3 27725583 27725622 -199798956 + L1MC4a LINE L1 5625 5663 -458 460 341 28 8 chr3 27725677 27725932 -199798646 + MIR SINE MIR 3 262 0 378 281 102 56 chr3 27725938 27726134 -199798444 + L1MC4a LINE L1 5690 5894 -1914 237 368 0 0 chr3 27726336 27726412 -199798166 + MIR SINE MIR 110 185 -77 465 261 71 38 chr3 27726507 27726691 -199797887 + L2 LINE L2 3122 3311 -2 524 274 25 60 chr3 27726921 27727122 -199797456 - MIR SINE MIR -64 198 5 22 56 0 0 chr3 27727263 27727299 -199797279 + AT_rich Low_complexity Low_complexity 1 36 0 327 274 124 65 chr3 27727431 27727654 -199796924 + L1ME LINE L1 5261 5469 -652 2049 130 7 3 chr3 27727654 27727955 -199796623 + AluSg SINE Alu 1 302 -8 327 274 124 65 chr3 27727955 27728165 -199796413 + L1ME LINE L1 5469 5720 -401 27 49 0 0 chr3 27728213 27728254 -199796324 + AT_rich Low_complexity Low_complexity 1 41 0 2775 183 34 15 chr3 27728645 27729285 -199795293 + L1MA9 LINE L1 5543 6290 -22 1002 298 81 24 chr3 27729927 27730310 -199794268 - MLT1I LTR MaLR 0 409 5 282 305 24 12 chr3 27730419 27730501 -199794077 - L2 LINE L2 -11 3261 3179 633 255 0 14 chr3 27731257 27731398 -199793180 - MLT1I LTR MaLR -1 408 270 196 157 59 0 chr3 27731748 27731799 -199792779 + CT-rich Low_complexity Low_complexity 4 57 0 281 232 14 14 chr3 27731815 27731884 -199792694 + CT-rich Low_complexity Low_complexity 4 72 0 299 284 216 8 chr3 27732022 27732156 -199792422 + MIR3 SINE MIR 44 205 -3 2313 87 43 3 chr3 27732896 27733243 -199791335 - L1MA2 LINE L1 -5 6299 5939 39 22 0 0 chr3 27733634 27733680 -199790898 + AT_rich Low_complexity Low_complexity 1 46 0 2163 118 0 0 chr3 27733778 27734074 -199790504 - AluSg SINE Alu -14 296 1 39 74 0 0 chr3 27734199 27734280 -199790298 + AT_rich Low_complexity Low_complexity 1 81 0 1926 265 35 21 chr3 27734578 27735145 -199789433 + MLT1G LTR MaLR 1 575 -15 836 234 54 0 chr3 27736280 27736464 -199788114 + MER58A DNA MER1_type 31 224 0 255 70 0 93 chr3 27736751 27736794 -199787784 - LTR8 LTR ERV1 0 691 653 2026 224 128 24 chr3 27736794 27737451 -199787127 - MER50 LTR ERV1 0 734 10 * 3001 169 30 81 chr3 27737445 27738149 -199786429 - LTR8 LTR ERV1 -23 668 1 189 308 0 0 chr3 27738789 27738841 -199785737 + L2 LINE L2 3220 3271 -1 257 263 0 38 chr3 27739504 27739584 -199784994 + Charlie7 DNA MER1_type 112 188 -2424 22 0 0 0 chr3 27740593 27740615 -199783963 + AT_rich Low_complexity Low_complexity 1 22 0 222 128 0 0 chr3 27740657 27740696 -199783882 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 253 0 77 chr3 27741015 27741106 -199783472 + Charlie7 DNA MER1_type 112 195 -2417 660 261 143 28 chr3 27741112 27741497 -199783081 + MLT1J2 LTR MaLR 3 446 0 564 295 98 30 chr3 27741570 27741939 -199782639 + Charlie7 DNA MER1_type 283 676 -1936 267 364 65 9 chr3 27742877 27743094 -199781484 - L1ME LINE L1 -298 5823 5595 26 64 0 0 chr3 27743126 27743173 -199781405 + AT_rich Low_complexity Low_complexity 1 47 0 403 207 19 4 chr3 27743231 27743345 -199781233 - L1MC4 LINE L1 0 8042 7883 180 0 0 0 chr3 27744559 27744579 -199779999 + (T)n Simple_repeat Simple_repeat 1 20 0 9302 63 10 114 chr3 27744802 27746350 -199778228 - SVA Other Other 0 1386 1 26 30 0 0 chr3 27746417 27746450 -199778128 + AT_rich Low_complexity Low_complexity 1 33 0 833 276 45 98 chr3 27746784 27747273 -199777305 - MLT1J LTR MaLR -43 468 6 368 254 51 35 chr3 27747283 27747480 -199777098 - HAL1 LINE L1 -254 2253 2054 272 231 15 15 chr3 27747551 27747616 -199776962 + MLT1J LTR MaLR 94 158 -353 238 263 29 88 chr3 27747706 27747843 -199776735 + MLT1J LTR MaLR 383 511 0 2348 107 0 0 chr3 27748085 27748394 -199776184 - AluSg SINE Alu -1 309 1 21 36 0 0 chr3 27748452 27748480 -199776098 + AT_rich Low_complexity Low_complexity 1 28 0 980 189 22 0 chr3 27749020 27749205 -199775373 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr3 27749423 27749447 -199775131 + AT_rich Low_complexity Low_complexity 1 24 0 370 206 0 14 chr3 27749528 27749601 -199774977 - MER52A LTR ERV1 0 1755 1684 * 3742 183 55 93 chr3 27749593 27750837 -199773741 - MER52A LTR ERV1 -559 1196 1 236 370 120 0 chr3 27752701 27752809 -199771769 - L2 LINE L2 -6 3266 3146 398 200 14 21 chr3 27752854 27752994 -199771584 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 1112 317 100 9 chr3 27753020 27753524 -199771054 + L2 LINE L2 2758 3313 0 417 186 23 124 chr3 27753651 27753780 -199770798 - MLT1H LTR MaLR -51 498 383 2424 89 3 0 chr3 27757553 27757856 -199766722 - AluSp SINE Alu -9 304 1 302 218 39 0 chr3 27758409 27758487 -199766091 + L1M4 LINE L1 2439 2519 -3627 22 0 0 0 chr3 27758800 27758822 -199765756 + AT_rich Low_complexity Low_complexity 1 22 0 307 323 131 3 chr3 27759013 27759295 -199765283 - L1ME LINE L1 -303 5818 5501 250 294 0 0 chr3 27759396 27759464 -199765114 + GA-rich Low_complexity Low_complexity 2 69 0 798 234 70 0 chr3 27760539 27760740 -199763838 - MER58C DNA MER1_type 0 215 1 645 244 82 22 chr3 27761415 27761685 -199762893 + LTR37A LTR ERV1 108 393 -33 4053 152 12 24 chr3 27762072 27763035 -199761543 - L1MC1 LINE L1 -25 6377 5355 258 254 0 0 chr3 27763036 27763091 -199761487 + Tigger5 DNA MER2_type 1 55 -2268 * 303 169 13 65 chr3 27763060 27763137 -199761441 + Tigger5 DNA MER2_type 2251 2323 0 350 206 14 14 chr3 27763149 27763222 -199761356 + Tigger5 DNA MER2_type 2251 2323 0 6303 234 21 14 chr3 27763225 27764961 -199759617 - L1MC1 LINE L1 -863 5352 3605 4108 222 19 15 chr3 27765027 27765874 -199758704 - MER21B LTR ERV1 -11 852 3 2862 245 43 44 chr3 27765883 27765976 -199758602 - L1MC1 LINE L1 -2907 3308 3216 2057 122 23 3 chr3 27765976 27766279 -199758299 - AluSx SINE Alu -3 309 1 2862 245 43 44 chr3 27766279 27767146 -199757432 - L1MC1 LINE L1 -2999 3216 2354 3415 131 26 2 chr3 27767146 27767687 -199756891 - MER41C LTR ERV1 0 554 1 2862 245 43 44 chr3 27767687 27768556 -199756022 - L1MC1 LINE L1 -3861 2354 1486 489 107 48 0 chr3 27768562 27768646 -199755932 - MSTC LTR MaLR -2 426 339 3575 179 82 62 chr3 27769775 27770629 -199753949 + L1MCa LINE L1 32 902 -5524 207 278 46 87 chr3 27770630 27770803 -199753775 - L2 LINE L2 -208 3064 2899 479 307 95 65 chr3 27771267 27771791 -199752787 - L2 LINE L2 -957 2357 1818 225 127 18 0 chr3 27773322 27773377 -199751201 - MER96B DNA MER1_type? -247 170 115 4139 228 163 30 chr3 27774277 27775964 -199748614 + L1MA8 LINE L1 7 1468 -5638 210 71 0 0 chr3 27775964 27775992 -199748586 + (TG)n Simple_repeat Simple_repeat 1 28 0 4139 228 163 30 chr3 27775992 27778248 -199746330 + L1MA8 LINE L1 1468 4181 -2925 5249 155 48 19 chr3 27778254 27779123 -199745455 + L1MA8 LINE L1 5599 6531 -720 2284 113 0 0 chr3 27779123 27779425 -199745153 - AluSq SINE Alu -11 302 1 5249 155 48 19 chr3 27779425 27780165 -199744413 + L1MA8 LINE L1 6531 7248 -3 680 288 62 0 chr3 27780303 27780546 -199744032 - L1ME LINE L1 -497 5669 5412 375 313 52 0 chr3 27781619 27781734 -199742844 + MER5C DNA MER1_type 2 122 -202 411 236 189 14 chr3 27781903 27782051 -199742527 - MIR SINE MIR -14 248 75 634 234 0 0 chr3 27782336 27782473 -199742105 - MSTB LTR MaLR -279 147 11 1764 152 11 0 chr3 27783760 27784030 -199740548 + AluSx SINE Alu 29 301 -11 263 273 0 0 chr3 27784530 27784585 -199739993 - L2 LINE L2 -2 3270 3216 455 290 130 12 chr3 27784632 27784801 -199739777 + MIR SINE MIR 5 193 -69 266 0 29 0 chr3 27784801 27784835 -199739743 + (TG)n Simple_repeat Simple_repeat 2 36 0 235 231 0 0 chr3 27784955 27785010 -199739568 - MLT2C1 LTR ERVL -2 395 351 215 203 14 0 chr3 27785011 27785080 -199739498 + (TA)n Simple_repeat Simple_repeat 2 71 0 186 103 0 0 chr3 27785091 27785120 -199739458 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 972 181 5 69 chr3 27785161 27785195 -199739383 - MLT1B LTR MaLR -188 202 167 2325 80 3 13 chr3 27785195 27785507 -199739071 - AluY SINE Alu -2 309 1 972 181 5 69 chr3 27785507 27785688 -199738890 - MLT1B LTR MaLR -223 167 1 7112 194 26 30 chr3 27786044 27786420 -199738158 - L1PA13 LINE L1 0 7601 7225 2898 177 34 5 chr3 27786420 27786984 -199737594 - LTR22 LTR ERVK 0 580 1 7112 194 26 30 chr3 27786984 27788465 -199736113 - L1PA13 LINE L1 -376 7225 5758 2557 58 0 10 chr3 27788465 27788777 -199735801 + AluY SINE Alu 1 309 -2 7112 194 26 30 chr3 27788777 27789482 -199735096 - L1PA13 LINE L1 -1843 5758 5051 15259 178 81 13 chr3 27789530 27795750 -199728828 - L1PB1 LINE L1 0 6867 1 6895 276 26 37 chr3 27795767 27798050 -199726528 - L1PA13 LINE L1 -2541 5043 2737 1894 136 59 0 chr3 27798050 27798336 -199726242 - AluSx SINE Alu -7 305 3 6895 276 26 37 chr3 27798336 27799503 -199725075 - L1PA13 LINE L1 -4847 2737 1559 1716 143 47 75 chr3 27799503 27799889 -199724689 + THE1C LTR MaLR 1 375 0 6895 276 26 37 chr3 27799889 27800994 -199723584 - L1PA13 LINE L1 -6025 1559 4 228 336 137 29 chr3 27801025 27801340 -199723238 - L2 LINE L2 -528 2786 2438 195 328 15 0 chr3 27801487 27801554 -199723024 + L2 LINE L2 3205 3272 0 394 339 74 49 chr3 27801586 27801952 -199722626 + L1MEd LINE L1 3 377 -5742 534 319 86 60 chr3 27802056 27802696 -199721882 + L1MEd LINE L1 594 1270 -5040 944 324 57 18 chr3 27802712 27803154 -199721424 + L1M3c LINE L1 897 1355 -5682 1317 255 21 29 chr3 27803162 27803543 -199721035 + L1M3c LINE L1 1722 2099 -4931 1591 230 14 0 chr3 27803549 27803914 -199720664 + L1P LINE L1 3957 4326 -1820 3317 214 100 7 chr3 27803932 27805512 -199719066 + L1PA15 LINE L1 7 1878 -4985 2248 137 3 8 chr3 27805526 27805892 -199718686 + L1PB1 LINE L1 5784 6147 -4 4905 187 57 16 chr3 27805896 27807652 -199716926 + L1PA15 LINE L1 5041 6868 -13 4615 262 93 14 chr3 27807671 27809997 -199714581 + L1M4c LINE L1 972 3578 -2804 2082 147 0 3 chr3 27809997 27810303 -199714275 + AluSg SINE Alu 2 306 -4 4615 262 93 14 chr3 27810303 27810734 -199713844 + L1M4c LINE L1 3578 3973 -2409 391 121 0 0 chr3 27810731 27810789 -199713789 + L1M4c LINE L1 4439 4496 -1886 * 3583 100 24 4 chr3 27810801 27811302 -199713276 - MER9 LTR ERVK 0 511 1 2319 57 4 0 chr3 27811302 27811583 -199712995 - HERVK9 LTR ERVK 0 5916 5635 15270 71 1 3 chr3 27811679 27813606 -199710972 - HERVK9 LTR ERVK -282 5634 3711 11423 46 1 2 chr3 27813606 27814984 -199709594 - HERVK9 LTR ERVK -3130 2786 1411 3366 98 2 4 chr3 27815085 27815542 -199709036 - HERVK9 LTR ERVK -5460 456 1 3652 101 2 10 chr3 27815542 27816057 -199708521 - MER9 LTR ERVK 0 511 1 2471 225 30 12 chr3 27816057 27816736 -199707842 + L1M4c LINE L1 4502 5192 -1190 5506 119 53 7 chr3 27817080 27817985 -199706593 - L1MA3 LINE L1 0 6305 5359 2780 213 7 18 chr3 27817984 27818544 -199706034 - L1M1 LINE L1 -7011 554 1 * 240 329 13 0 chr3 27818583 27818662 -199705916 + MIR3 SINE MIR 104 183 -25 240 326 179 5 chr3 27819373 27819557 -199705021 - L3b LINE CR1 -120 1463 1248 33 56 0 0 chr3 27819760 27819814 -199704764 + AT_rich Low_complexity Low_complexity 1 54 0 5772 235 38 17 chr3 27819873 27820930 -199703648 + L1M2 LINE L1 2772 3876 -2972 2127 120 0 3 chr3 27820930 27821238 -199703340 + AluSg SINE Alu 1 307 -3 5772 235 38 17 chr3 27821238 27821894 -199702684 + L1M2 LINE L1 3876 4517 -2331 * 5829 217 13 30 chr3 27821892 27821949 -199702629 - L1 LINE L1 -2442 3704 3648 2062 145 132 5 chr3 27821949 27822329 -199702249 - MSTA LTR MaLR 0 428 1 5829 217 13 30 chr3 27822329 27823765 -199700813 - L1 LINE L1 -2498 3648 2190 6439 87 22 1 chr3 27823765 27824449 -199700129 - L1PA14 LINE L1 -2 6159 5491 2188 101 3 0 chr3 27824449 27824736 -199699842 - AluSp SINE Alu -25 288 1 6439 87 22 1 chr3 27824736 27825653 -199698925 - L1PA14 LINE L1 -670 5491 4550 3536 48 0 0 chr3 27825654 27826089 -199698489 + L1PA3 LINE L1 5721 6155 0 3750 179 13 0 chr3 27826156 27826854 -199697724 - L1PA14 LINE L1 -1584 4562 3856 4230 297 176 24 chr3 27826855 27829260 -199695318 + L2 LINE L2 525 3313 0 180 393 57 52 chr3 27829338 27829549 -199695029 - L2 LINE L2 -76 3196 2985 1366 200 53 39 chr3 27829571 27829931 -199694647 + MLT1A1 LTR MaLR 1 365 0 976 291 55 12 chr3 27830053 27830591 -199693987 + MER69 DNA AcHobo 3 596 -630 470 242 81 7 chr3 27830631 27830780 -199693798 + MER69 DNA AcHobo 1884 2043 -483 818 251 52 43 chr3 27830814 27831186 -199693392 - MLT1C LTR MaLR -7 460 1 1192 224 38 72 chr3 27831186 27831516 -199693062 + MER69 DNA AcHobo 2084 2397 -129 2004 127 21 0 chr3 27831516 27831807 -199692771 - AluSx SINE Alu -15 297 1 1192 224 38 72 chr3 27831807 27831919 -199692659 + MER69 DNA AcHobo 2397 2511 -15 2218 109 0 10 chr3 27833981 27834285 -199690293 - AluY SINE Alu -10 301 1 259 234 28 75 chr3 27834801 27834908 -199689670 - MLT1J LTR MaLR -16 533 432 314 295 41 16 chr3 27835068 27835190 -199689388 - MLT1I LTR MaLR -267 142 18 2262 94 0 13 chr3 27836636 27836924 -199687654 + AluY SINE Alu 1 286 -25 255 93 0 0 chr3 27836924 27836967 -199687611 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2262 94 0 13 chr3 27836967 27836987 -199687591 + AluY SINE Alu 286 305 -6 183 313 88 0 chr3 27837319 27837399 -199687179 + MIR SINE MIR 110 196 -66 438 242 152 67 chr3 27837694 27838095 -199686483 - L1ME4a LINE L1 -6 6115 5681 327 281 82 37 chr3 27838898 27839033 -199685545 - L1ME3A LINE L1 -3 6167 6027 2521 65 0 0 chr3 27839142 27839450 -199685128 + AluY SINE Alu 1 308 -3 2404 44 10 0 chr3 27839935 27840230 -199684348 - AluY SINE Alu -13 298 1 1386 222 121 8 chr3 27842652 27843008 -199681570 + MSTD LTR MaLR 1 396 0 187 299 13 52 chr3 27843015 27843092 -199681486 - L2 LINE L2 -13 3300 3227 219 239 33 11 chr3 27843235 27843327 -199681251 + (TA)n Simple_repeat Simple_repeat 1 94 0 629 319 84 31 chr3 27843714 27844097 -199680481 - MLT1J LTR MaLR -36 475 73 1979 165 113 10 chr3 27845289 27845677 -199678901 + MSTA LTR MaLR 1 428 0 244 265 29 0 chr3 27846824 27846892 -199677686 - MER103 DNA DNA -7 159 90 400 293 26 0 chr3 27848304 27848420 -199676158 + MIR SINE MIR 34 152 -56 265 322 105 23 chr3 27849463 27849634 -199674944 - MLT1J LTR MaLR -15 496 312 297 163 139 23 chr3 27849788 27849874 -199674704 - MLT1J LTR MaLR -384 127 32 329 293 12 0 chr3 27849925 27850007 -199674571 - MIR SINE MIR -57 151 69 753 193 28 7 chr3 27850161 27850306 -199674272 + MER5A DNA MER1_type 40 187 -2 1258 186 102 0 chr3 27850702 27850987 -199673591 - MER33 DNA MER1_type 0 324 11 1162 199 50 80 chr3 27851102 27851439 -199673139 + LTR39 LTR ERV1 1 327 -456 2413 47 0 0 chr3 27851490 27851787 -199672791 - L1PA5 LINE L1 -3 6151 5855 633 239 28 22 chr3 27851806 27851986 -199672592 + LTR39 LTR ERV1 600 780 -3 497 190 55 16 chr3 27853486 27853611 -199670967 + MIR SINE MIR 40 177 -67 21 36 0 0 chr3 27853669 27853697 -199670881 + AT_rich Low_complexity Low_complexity 1 28 0 255 61 0 0 chr3 27853697 27853730 -199670848 + (TTA)n Simple_repeat Simple_repeat 3 35 0 243 298 71 36 chr3 27853964 27854048 -199670530 - MIR SINE MIR -91 117 31 1741 185 15 9 chr3 27854169 27854510 -199670068 + MER2 DNA MER2_type 2 344 0 27 0 0 0 chr3 27855394 27855421 -199669157 + AT_rich Low_complexity Low_complexity 1 27 0 661 188 0 0 chr3 27857316 27857433 -199667145 + MER3 DNA MER1_type 51 167 -42 1895 156 15 45 chr3 27857442 27857669 -199666909 + MER3 DNA MER1_type 2233 2445 -179 1897 103 0 60 chr3 27857669 27858008 -199666570 + AluSq SINE Alu 1 321 0 1895 156 15 45 chr3 27858008 27858183 -199666395 + MER3 DNA MER1_type 2445 2624 0 547 312 23 28 chr3 27859185 27859400 -199665178 + MIR SINE MIR 38 251 -11 338 348 32 26 chr3 27859408 27859563 -199665015 - MIR SINE MIR -22 240 85 416 289 58 19 chr3 27859622 27859778 -199664800 + MIR SINE MIR 80 241 -21 315 96 0 0 chr3 27860387 27860439 -199664139 + (T)n Simple_repeat Simple_repeat 1 52 0 854 241 25 10 chr3 27860845 27861044 -199663534 + MER58A DNA MER1_type 2 203 -21 522 241 9 0 chr3 27861056 27861168 -199663410 - MER58A DNA MER1_type 0 113 1 534 236 115 12 chr3 27861203 27861368 -199663210 + MIR SINE MIR 76 257 -5 21 0 0 0 chr3 27861975 27861996 -199662582 + AT_rich Low_complexity Low_complexity 1 21 0 6898 61 9 0 chr3 27862515 27863700 -199660878 - L1PA6 LINE L1 -11 6143 4953 314 315 21 21 chr3 27863940 27864079 -199660499 + MIR SINE MIR 13 150 -65 231 239 161 39 chr3 27864323 27864478 -199660100 + MIR SINE MIR 78 251 -11 2068 138 3 0 chr3 27864923 27865219 -199659359 - AluSx SINE Alu -13 299 3 21 36 0 0 chr3 27865381 27865409 -199659169 + AT_rich Low_complexity Low_complexity 1 28 0 244 314 31 69 chr3 27865418 27865577 -199659001 - MIR SINE MIR -8 254 102 219 139 0 0 chr3 27865584 27865620 -199658958 + (A)n Simple_repeat Simple_repeat 1 36 0 1477 232 115 36 chr3 27865883 27866522 -199658056 - L1ME1 LINE L1 -324 5842 5149 2631 241 89 6 chr3 27866535 27867431 -199657147 - L1ME1 LINE L1 -1549 4597 3627 1243 288 121 18 chr3 27868338 27868834 -199655744 + MLT1H LTR MaLR 1 547 -2 2335 259 46 31 chr3 27869329 27870257 -199654321 - L2 LINE L2 -165 3148 2207 805 136 16 0 chr3 27871234 27871359 -199653219 + FLAM_C SINE Alu 1 127 -6 841 212 28 1 chr3 27872810 27872989 -199651589 - MSTD LTR MaLR 0 396 232 276 30 0 0 chr3 27872989 27873022 -199651556 + (GA)n Simple_repeat Simple_repeat 2 34 0 450 158 46 14 chr3 27873035 27873191 -199651387 - MSTD LTR MaLR -304 124 1 211 273 11 57 chr3 27873427 27873515 -199651063 - MIR SINE MIR -26 236 153 2145 144 0 3 chr3 27873518 27873831 -199650747 + AluSx SINE Alu 1 312 0 183 156 0 0 chr3 27874000 27874032 -199650546 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 6876 68 16 2 chr3 27874100 27875637 -199648941 + L1PA7 LINE L1 4600 6154 0 210 348 54 68 chr3 27875672 27875734 -199648844 - L2 LINE L2 -942 2372 2311 2323 91 0 0 chr3 27875734 27876032 -199648546 + AluSg SINE Alu 1 298 -12 210 348 54 68 chr3 27876032 27876190 -199648388 - L2 LINE L2 -1003 2311 2155 275 258 11 43 chr3 27877558 27877651 -199646927 - L2 LINE L2 -15 3257 3168 315 268 82 10 chr3 27877679 27877776 -199646802 + MER5A DNA MER1_type 9 112 -77 258 344 16 49 chr3 27878145 27878267 -199646311 + L2 LINE L2 2944 3061 -211 1880 256 46 77 chr3 27879033 27879648 -199644930 + MLT1G LTR MaLR 1 590 0 1924 158 0 3 chr3 27879648 27879932 -199644646 + AluSx SINE Alu 1 283 -29 522 304 84 11 chr3 27879993 27880184 -199644394 + MIR SINE MIR 1 205 -57 1782 156 29 58 chr3 27880452 27880799 -199643779 - MER1B DNA MER1_type 0 337 1 651 315 42 12 chr3 27880899 27881140 -199643438 + MIR SINE MIR 13 260 -2 514 250 152 18 chr3 27884024 27884188 -199640390 + MER5A DNA MER1_type 4 189 0 2070 120 10 10 chr3 27884205 27884514 -199640064 + AluSc SINE Alu 1 309 0 10565 197 23 32 chr3 27884749 27887964 -199636614 - L1MA3 LINE L1 0 7724 4484 822 217 14 57 chr3 27887964 27888204 -199636374 - AluJb SINE Alu 0 312 96 10565 197 23 32 chr3 27888204 27889790 -199634788 - L1MA3 LINE L1 -3240 4484 2884 539 119 0 36 chr3 27889789 27889873 -199634705 - L1MA3 LINE L1 -5992 1573 1493 * 8522 184 18 9 chr3 27889980 27891484 -199633094 - L1MA3 LINE L1 -6030 1535 19 491 263 25 0 chr3 27892444 27892562 -199632016 - MIR SINE MIR -71 191 71 2385 303 58 57 chr3 27893140 27894307 -199630271 - L2 LINE L2 -31 3282 2127 2268 79 3 20 chr3 27894307 27894610 -199629968 + AluSg SINE Alu 1 298 -12 2385 303 58 57 chr3 27894610 27894754 -199629824 - L2 LINE L2 -1186 2127 1985 635 292 86 27 chr3 27895529 27896322 -199628256 + L1MCc LINE L1 1157 1990 -4887 674 254 10 31 chr3 27896375 27896405 -199628173 + L1ME2 LINE L1 5949 5978 -186 2408 215 25 129 chr3 27896405 27897177 -199627401 + LTR8 LTR ERV1 1 691 0 674 254 10 31 chr3 27897177 27897339 -199627239 + L1ME2 LINE L1 5978 6137 -27 630 269 7 0 chr3 27897371 27897516 -199627062 - L2 LINE L2 -1323 1991 1846 369 0 0 0 chr3 27897938 27897979 -199626599 + (CA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr3 27898364 27898387 -199626191 + AT_rich Low_complexity Low_complexity 1 23 0 230 317 131 45 chr3 27899350 27899571 -199625007 - MIR SINE MIR -9 253 14 344 156 13 13 chr3 27899635 27899712 -199624866 - L1MC4 LINE L1 -974 7068 6992 251 138 21 149 chr3 27899749 27899843 -199624735 - HAL1 LINE L1 -2310 197 116 201 315 41 41 chr3 27902592 27902665 -199621913 - MIR SINE MIR -187 75 3 289 314 103 54 chr3 27903469 27903654 -199620924 + MLT1J LTR MaLR 1 194 -317 313 252 55 16 chr3 27904173 27904300 -199620278 + MIR SINE MIR 99 230 -32 1734 150 11 21 chr3 27904656 27904943 -199619635 - AluJb SINE Alu 0 312 29 23 0 0 0 chr3 27905154 27905177 -199619401 + AT_rich Low_complexity Low_complexity 1 23 0 2316 81 13 0 chr3 27905345 27905652 -199618926 - AluY SINE Alu 0 311 1 206 309 165 0 chr3 27905855 27905952 -199618626 + MIR SINE MIR 132 244 -18 446 174 62 76 chr3 27906709 27906853 -199617725 - L2 LINE L2 -10 3303 3162 359 289 137 32 chr3 27907313 27907503 -199617075 - MIR SINE MIR -31 231 22 186 179 0 26 chr3 27907511 27907550 -199617028 - L2 LINE L2 0 3272 3235 5246 157 59 18 chr3 27907578 27908746 -199615832 + L1MA7 LINE L1 5077 6291 0 2247 105 0 7 chr3 27909470 27909774 -199614804 - AluSg SINE Alu -7 303 2 22 35 0 0 chr3 27911355 27911384 -199613194 + AT_rich Low_complexity Low_complexity 1 29 0 283 311 92 46 chr3 27912749 27912945 -199611633 + L2 LINE L2 2594 2798 -516 2175 105 7 20 chr3 27913008 27913313 -199611265 - AluSg SINE Alu -9 301 1 189 229 83 0 chr3 27913605 27913653 -199610925 + L2 LINE L2 3262 3313 0 188 380 25 8 chr3 27913651 27913772 -199610806 + MIR SINE MIR 131 253 -9 * 231 132 0 0 chr3 27914229 27914267 -199610311 - L1MA9 LINE L1 -2 6310 6273 828 151 115 11 chr3 27914267 27914386 -199610192 - L1MA9 LINE L1 -22 6290 6185 333 0 0 0 chr3 27914386 27914423 -199610155 + (TG)n Simple_repeat Simple_repeat 2 38 0 828 151 115 11 chr3 27914423 27914505 -199610073 - L1MA9 LINE L1 -127 6185 6067 343 231 105 70 chr3 27914581 27914724 -199609854 + MIR SINE MIR 65 212 -50 2534 110 28 0 chr3 27915550 27915942 -199608636 + L1MA1 LINE L1 5900 6302 0 23 0 0 0 chr3 27915942 27915965 -199608613 + AT_rich Low_complexity Low_complexity 1 23 0 1019 175 0 55 chr3 27916188 27916388 -199608190 - MER5A DNA MER1_type 0 189 1 765 271 49 0 chr3 27917391 27917594 -199606984 - MER58A DNA MER1_type -11 213 1 756 197 83 31 chr3 27917607 27917800 -199606778 + MER3 DNA MER1_type 6 208 -1 242 367 25 17 chr3 27918046 27918166 -199606412 - L2 LINE L2 0 3313 3193 344 264 58 61 chr3 27918167 27918326 -199606252 - L1M4 LINE L1 -1620 5945 5794 1555 105 8 29 chr3 27918326 27918409 -199606169 + AluSg SINE Alu 47 130 -192 189 0 0 0 chr3 27918409 27918430 -199606148 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1555 105 8 29 chr3 27918430 27918627 -199605951 + AluSg SINE Alu 130 322 0 344 264 58 61 chr3 27918627 27918704 -199605874 - L1M4 LINE L1 -1771 5794 5718 25 31 0 0 chr3 27918898 27918930 -199605648 + AT_rich Low_complexity Low_complexity 1 32 0 443 116 27 89 chr3 27919489 27919601 -199604977 - L1MA7 LINE L1 -2 6289 6185 629 204 123 54 chr3 27920363 27920623 -199603955 - L1M4 LINE L1 -4110 3455 3178 613 185 9 0 chr3 27920626 27920734 -199603844 + FLAM_A SINE Alu 2 110 -32 1033 221 72 13 chr3 27920745 27921052 -199603526 - L1M4 LINE L1 -4370 3195 2871 2240 185 13 111 chr3 27921060 27921791 -199602787 + L1MA8 LINE L1 3461 4125 -3440 * 4154 154 26 16 chr3 27921788 27922554 -199602024 + L1MA8 LINE L1 6859 7632 -78 231 152 30 30 chr3 27922656 27922722 -199601856 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 196 405 26 9 chr3 27922880 27922996 -199601582 + L2 LINE L2 2935 3052 -220 1920 134 3 0 chr3 27923240 27923524 -199601054 + AluSx SINE Alu 27 311 -1 209 385 12 0 chr3 27923901 27923984 -199600594 + L2 LINE L2 3230 3313 0 358 286 48 0 chr3 27924571 27924676 -199599902 - L1ME3A LINE L1 0 6170 6061 955 226 10 5 chr3 27924743 27924947 -199599631 - AluJo SINE Alu -22 290 86 8165 210 36 7 chr3 27924966 27927474 -199597104 - L1MA4A LINE L1 -26 6277 3665 324 0 0 0 chr3 27927474 27927510 -199597068 + (TG)n Simple_repeat Simple_repeat 1 36 0 8165 210 36 7 chr3 27927510 27927821 -199596757 - L1MA4A LINE L1 -2638 3665 3364 897 271 69 3 chr3 27927815 27928103 -199596475 - L1ME3A LINE L1 -184 5986 5680 * 188 233 117 17 chr3 27928817 27928877 -199595701 + MER5A DNA MER1_type 40 105 -84 1176 201 36 52 chr3 27929002 27929331 -199595247 - MER33 DNA MER1_type 0 324 1 243 262 24 12 chr3 27929333 27929417 -199595161 + (TAAA)n Simple_repeat Simple_repeat 4 88 0 199 91 23 23 chr3 27929640 27929684 -199594894 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 184 322 100 78 chr3 27929745 27929925 -199594653 - MER5A DNA MER1_type 0 189 6 184 380 105 25 chr3 27930262 27930462 -199594116 - L2 LINE L2 -163 3109 2894 388 299 16 0 chr3 27930552 27930679 -199593899 - MER94 DNA DNA -1 133 5 211 290 32 0 chr3 27930852 27930914 -199593664 + MIR SINE MIR 93 156 -106 743 219 91 91 chr3 27930922 27931251 -199593327 - MER46C DNA MER2_type -5 333 5 229 196 0 0 chr3 27931671 27931717 -199592861 + A-rich Low_complexity Low_complexity 3 48 0 692 176 206 41 chr3 27933356 27933526 -199591052 + MER20 DNA MER1_type 22 219 0 22 35 0 0 chr3 27933529 27933558 -199591020 + AT_rich Low_complexity Low_complexity 1 29 0 387 349 24 0 chr3 27933679 27933848 -199590730 - MIR SINE MIR -37 225 53 2460 65 0 19 chr3 27934197 27934507 -199590071 - AluY SINE Alu -7 304 1 333 258 129 11 chr3 27934558 27934651 -199589927 - MER5A DNA MER1_type -83 106 3 237 245 0 0 chr3 27934651 27934700 -199589878 - MER105 DNA DNA -149 55 7 959 307 102 21 chr3 27935427 27935857 -199588721 - LTR33A LTR ERVL 0 523 59 579 313 39 0 chr3 27936066 27936248 -199588330 + MIR SINE MIR 58 246 -16 447 225 0 0 chr3 27937495 27937575 -199587003 + Tigger3b DNA MER2_type 2 81 -1150 13015 198 74 9 chr3 27937577 27944150 -199580428 + L1PA14 LINE L1 1 7597 -2 6537 151 30 7 chr3 27944150 27945282 -199579296 + Tigger3b DNA MER2_type 73 1230 -1 294 243 7 132 chr3 27945760 27945896 -199578682 - L2 LINE L2 -4 3268 3150 2645 93 3 0 chr3 27946451 27946805 -199577773 + THE1A LTR MaLR 1 355 0 223 364 52 0 chr3 27947085 27947162 -199577416 + MIR SINE MIR 2 82 -180 22 0 0 0 chr3 27947302 27947324 -199577254 + AT_rich Low_complexity Low_complexity 1 22 0 253 242 0 32 chr3 27947356 27947418 -199577160 - MER69 DNA AcHobo -2431 95 36 580 116 0 0 chr3 27947428 27947514 -199577064 - AluSc SINE Alu -8 301 216 12159 175 33 6 chr3 27948260 27950355 -199574223 + L1PA15-16 LINE L1 1 2153 -4696 2050 174 25 28 chr3 27951402 27951799 -199572779 - MSTD LTR MaLR 0 396 1 199 200 267 0 chr3 27952284 27952344 -199572234 + L2 LINE L2 3238 3313 0 1939 121 50 0 chr3 27952471 27952753 -199571825 - AluSx SINE Alu -16 296 1 1428 206 60 68 chr3 27953442 27953839 -199570739 + MSTD LTR MaLR 3 396 0 706 191 166 50 chr3 27954215 27954535 -199570043 + L1MC5 LINE L1 7179 7535 -426 268 323 0 0 chr3 27954576 27954653 -199569925 - MIR SINE MIR -53 155 78 242 232 12 85 chr3 27955832 27955914 -199568664 - L2 LINE L2 -12 3301 3226 5698 172 26 9 chr3 27956359 27957965 -199566613 - L1PA15 LINE L1 -2 6163 4533 1432 152 90 166 chr3 27957964 27958248 -199566330 - L1 LINE L1 -1980 4166 3943 * 2885 137 25 6 chr3 27958248 27958724 -199565854 + L1PA14 LINE L1 5674 6158 -3 1432 152 90 166 chr3 27958724 27958986 -199565592 - L1 LINE L1 -2203 3943 3662 3350 119 4 86 chr3 27958987 27959140 -199565438 + L1MA5A LINE L1 5671 5835 -462 2141 133 0 0 chr3 27959140 27959434 -199565144 - AluSx SINE Alu -18 294 1 3350 119 4 86 chr3 27959434 27959958 -199564620 + L1MA5A LINE L1 5835 6293 -4 4784 191 18 9 chr3 27959965 27960930 -199563648 + L1MA8 LINE L1 5319 6291 0 325 257 178 17 chr3 27961206 27961383 -199563195 - L1P LINE L1 -2302 3844 3641 4386 187 38 9 chr3 27961550 27963081 -199561497 - L1PB4 LINE L1 -1 6155 4581 215 200 33 0 chr3 27963435 27963536 -199561042 + (TA)n Simple_repeat Simple_repeat 1 104 0 451 286 9 27 chr3 27963584 27963804 -199560774 + L1M4 LINE L1 2249 2464 -3682 327 272 61 22 chr3 27963819 27964047 -199560531 + L1M4 LINE L1 2541 2777 -3369 204 97 0 0 chr3 27964795 27964826 -199559752 + (A)n Simple_repeat Simple_repeat 1 31 0 1244 260 44 0 chr3 27965984 27966323 -199558255 - L1ME3A LINE L1 0 6170 5817 2467 30 0 14 chr3 27966425 27966720 -199557858 + AluY SINE Alu 1 291 -20 590 305 85 31 chr3 27966769 27967156 -199557422 - L1ME3A LINE L1 -320 5801 5394 1437 281 91 43 chr3 27967272 27968386 -199556192 - HAL1 LINE L1 -100 2407 1077 1113 212 68 0 chr3 27968498 27968657 -199555921 - AluJo SINE Alu -17 295 148 198 0 0 0 chr3 27968657 27968679 -199555899 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1113 212 68 0 chr3 27968679 27968749 -199555829 - AluJo SINE Alu -159 153 49 1685 129 12 0 chr3 27968749 27968997 -199555581 - AluSg SINE Alu -59 251 1 437 272 92 35 chr3 27969028 27969256 -199555322 - L1MC3 LINE L1 -365 7420 7180 837 207 79 26 chr3 27969282 27969509 -199555069 - L1MC3 LINE L1 -799 6986 6748 468 175 45 19 chr3 27969509 27969663 -199554915 + CT-rich Low_complexity Low_complexity 2 159 0 441 36 0 0 chr3 27969705 27969760 -199554818 + (TA)n Simple_repeat Simple_repeat 1 55 0 2430 123 26 21 chr3 27970564 27970988 -199553590 + L1PB2 LINE L1 5724 6149 -2 2380 225 83 55 chr3 27971010 27971591 -199552987 - L1ME2 LINE L1 -24 6140 5577 2151 81 0 14 chr3 27971591 27971874 -199552704 + AluY SINE Alu 1 279 -32 212 77 26 0 chr3 27971875 27971914 -199552664 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2380 225 83 55 chr3 27971914 27972740 -199551838 - L1ME2 LINE L1 -586 5578 4682 491 210 30 10 chr3 27973244 27973344 -199551234 + MER81 DNA DNA 13 114 0 34 42 0 0 chr3 27973411 27973459 -199551119 + AT_rich Low_complexity Low_complexity 1 48 0 5964 104 26 5 chr3 27973845 27975015 -199549563 - L1PA14 LINE L1 -5 6156 4969 610 198 13 13 chr3 27975015 27975172 -199549406 - L1PA14 LINE L1 -1636 4510 4354 303 333 0 9 chr3 27975174 27975279 -199549299 + CT-rich Low_complexity Low_complexity 3 106 0 308 308 12 0 chr3 27976096 27976201 -199548377 - MLT1G LTR MaLR -458 109 3 31 58 0 0 chr3 27976295 27976347 -199548231 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr3 27977341 27977369 -199547209 + AT_rich Low_complexity Low_complexity 1 28 0 1480 237 113 11 chr3 27978184 27978660 -199545918 - MLT1H LTR MaLR -6 543 19 434 290 68 11 chr3 27979928 27980104 -199544474 + MIR SINE MIR 48 233 -29 619 332 27 16 chr3 27981060 27981316 -199543262 - MIR SINE MIR -2 260 2 485 275 9 0 chr3 27981896 27982005 -199542573 - MLT1F1 LTR MaLR -72 495 386 4950 135 8 30 chr3 27982078 27982879 -199541699 + LTR39 LTR ERV1 1 783 0 231 261 0 0 chr3 27982894 27982940 -199541638 - MER63 DNA MER1_type -25 1035 990 286 153 306 0 chr3 27982954 27983026 -199541552 - MER63 DNA MER1_type -85 751 32 453 254 26 8 chr3 27983096 27983275 -199541303 - MLT1G1 LTR MaLR -281 274 8 1601 226 113 26 chr3 27983634 27984095 -199540483 - MLT1D LTR MaLR -4 501 1 207 281 16 0 chr3 27984287 27984351 -199540227 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 551 259 77 24 chr3 27984440 27984687 -199539891 - L1ME LINE L1 -312 5809 5550 2439 70 0 29 chr3 27984800 27985113 -199539465 + AluY SINE Alu 1 304 -7 560 259 82 65 chr3 27985368 27985600 -199538978 - MLT1J1 LTR MaLR -11 435 200 1104 267 65 41 chr3 27985631 27986154 -199538424 - MLT1E LTR MaLR -2 591 2 474 273 71 13 chr3 27986163 27986317 -199538261 - MLT1J2 LTR MaLR -287 163 1 2239 112 0 0 chr3 27986450 27986745 -199537833 - AluSc SINE Alu -14 295 1 375 275 114 8 chr3 27987384 27987515 -199537063 - MLT1G LTR MaLR -10 580 436 330 475 84 44 chr3 27987512 27987786 -199536792 - MLT1G LTR MaLR -305 285 1 * 2243 119 0 3 chr3 27988056 27988358 -199536220 + AluSg SINE Alu 1 301 -9 551 255 39 25 chr3 27988628 27988832 -199535746 - MLT1L LTR MaLR 0 615 409 240 240 29 67 chr3 27989117 27989221 -199535357 - L2 LINE L2 -260 3012 2913 21 0 0 0 chr3 27989937 27989958 -199534620 + AT_rich Low_complexity Low_complexity 1 21 0 9559 185 39 14 chr3 27990112 27990799 -199533779 + L1PA15 LINE L1 3053 3722 -2443 205 26 26 51 chr3 27990799 27990838 -199533740 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 9559 185 39 14 chr3 27990838 27993206 -199531372 + L1PA15 LINE L1 3722 6163 -2 42 20 0 0 chr3 27993549 27993598 -199530980 + AT_rich Low_complexity Low_complexity 1 49 0 305 354 34 34 chr3 27994364 27994511 -199530067 - L2 LINE L2 -4 3268 3122 641 289 126 28 chr3 27994882 27995207 -199529371 + MLT1K LTR MaLR 215 571 -17 275 341 98 18 chr3 27995231 27995395 -199529183 - L2 LINE L2 -182 3090 2914 234 260 130 13 chr3 27995629 27995706 -199528872 - MLT1L LTR MaLR -98 517 432 302 267 0 40 chr3 27995873 27995974 -199528604 - MLT1L LTR MaLR -315 300 204 13040 136 68 22 chr3 27996223 27997962 -199526616 - Tigger1 DNA MER2_type 0 2418 547 2413 54 0 27 chr3 27997962 27998258 -199526320 + AluY SINE Alu 1 288 -23 13040 136 68 22 chr3 27998258 27998806 -199525772 - Tigger1 DNA MER2_type -1871 547 26 312 269 60 67 chr3 27999058 27999145 -199525433 - MIR SINE MIR -70 192 105 2648 35 0 6 chr3 27999145 27999456 -199525122 - AluY SINE Alu -2 309 1 312 269 60 67 chr3 27999456 27999502 -199525076 - MIR SINE MIR -157 105 60 257 365 47 20 chr3 27999572 27999704 -199524874 + MIR SINE MIR 6 144 -118 192 40 0 0 chr3 27999704 27999729 -199524849 + (ATG)n Simple_repeat Simple_repeat 1 25 0 257 365 47 20 chr3 27999729 27999744 -199524834 + MIR SINE MIR 144 157 -105 916 181 13 86 chr3 28000011 28000243 -199524335 - MER20 DNA MER1_type -2 217 3 952 311 93 7 chr3 28001918 28002326 -199522252 - L2 LINE L2 -612 2702 2260 183 80 0 0 chr3 28002998 28003023 -199521555 + (ATGGTG)n Simple_repeat Simple_repeat 2 26 0 560 307 34 29 chr3 28003032 28003270 -199521308 - MIR SINE MIR -16 246 8 359 236 94 0 chr3 28003284 28003390 -199521188 - MIR SINE MIR -94 168 53 438 296 126 13 chr3 28003495 28003725 -199520853 - LTR33A LTR ERVL -4 519 264 429 310 22 33 chr3 28003988 28004172 -199520406 - MER5A DNA MER1_type -7 182 1 1518 188 3 30 chr3 28004504 28004807 -199519771 + AluJb SINE Alu 11 305 -7 299 336 19 47 chr3 28006637 28006744 -199517834 + L2 LINE L2 3151 3254 -18 719 193 0 7 chr3 28006869 28007014 -199517564 - L1MB7 LINE L1 -19 6165 6022 351 0 0 0 chr3 28007014 28007053 -199517525 + (CA)n Simple_repeat Simple_repeat 1 39 0 523 248 59 0 chr3 28007056 28007209 -199517369 + L1M4 LINE L1 4265 4426 -1720 375 23 0 0 chr3 28007217 28007261 -199517317 + (TG)n Simple_repeat Simple_repeat 2 45 0 608 272 6 12 chr3 28007267 28007436 -199517142 - L1 LINE L1 -1903 4243 4076 364 242 100 17 chr3 28008756 28008876 -199515702 - MER103 DNA DNA -29 137 8 1222 77 0 18 chr3 28009879 28010047 -199514531 - AluY SINE Alu 0 311 147 187 325 81 41 chr3 28010720 28010843 -199513735 + L3 LINE CR1 1449 1576 -1 252 86 0 0 chr3 28011995 28012030 -199512548 + (TA)n Simple_repeat Simple_repeat 2 36 0 41678 60 6 0 chr3 28012533 28018633 -199505945 - L1PA5 LINE L1 -8 6146 11 187 296 0 0 chr3 28019331 28019375 -199505203 + MER5A DNA MER1_type 22 65 -124 254 176 0 129 chr3 28020947 28021032 -199503546 + MIR SINE MIR 128 201 -61 524 325 135 31 chr3 28021600 28022083 -199502495 + L2 LINE L2 2225 2757 -557 284 331 158 66 chr3 28022222 28022539 -199502039 + L2 LINE L2 2927 3272 0 387 279 128 11 chr3 28023085 28023264 -199501314 - L1ME3A LINE L1 -219 5934 5735 265 280 30 23 chr3 28023265 28023397 -199501181 - L1ME3A LINE L1 -2406 3723 3591 383 285 39 64 chr3 28023571 28023852 -199500726 - L1ME3A LINE L1 -3171 2958 2685 419 292 81 0 chr3 28023923 28024084 -199500494 - L1ME3A LINE L1 -3630 2499 2326 3371 119 8 0 chr3 28024453 28024973 -199499605 - L1PA15 LINE L1 -137 6028 5505 903 106 8 0 chr3 28024973 28025101 -199499477 + L1PA15 LINE L1 6031 6163 -2 798 306 87 46 chr3 28025148 28025989 -199498589 - L1MEd LINE L1 -4583 1546 713 278 263 62 0 chr3 28026006 28026086 -199498492 - L1MEd LINE L1 -5466 653 569 321 89 0 0 chr3 28027712 28027757 -199496821 + (TC)n Simple_repeat Simple_repeat 1 45 0 2030 107 4 0 chr3 28028152 28028422 -199496156 - AluSx SINE Alu -13 299 29 315 0 0 0 chr3 28029047 28029082 -199495496 + (TA)n Simple_repeat Simple_repeat 1 35 0 341 289 33 11 chr3 28029355 28029445 -199495133 - MIR SINE MIR -157 105 14 1610 268 79 34 chr3 28029591 28029899 -199494679 - MLT1E LTR MaLR 0 593 301 1604 193 46 44 chr3 28029899 28030288 -199494290 + MLT1B LTR MaLR 1 390 0 1610 268 79 34 chr3 28030288 28030546 -199494032 - MLT1E LTR MaLR -292 301 1 24 0 0 0 chr3 28031250 28031274 -199493304 + AT_rich Low_complexity Low_complexity 1 24 0 183 264 0 57 chr3 28032182 28032235 -199492343 - L2 LINE L2 -3 3269 3220 201 353 29 0 chr3 28032483 28032551 -199492027 - L3 LINE CR1 -7 1570 1501 367 312 51 38 chr3 28032871 28033028 -199491550 + MLT1H1 LTR MaLR 45 203 -352 901 137 15 0 chr3 28033043 28033174 -199491404 + AluSq/x SINE Alu 1 133 -179 342 275 86 31 chr3 28033179 28033463 -199491115 + MLT1H1 LTR MaLR 161 524 -18 263 300 0 0 chr3 28033566 28033616 -199490962 + L3 LINE CR1 1517 1566 -11 203 394 0 0 chr3 28034504 28034598 -199489980 + L2 LINE L2 3220 3313 0 1930 160 41 62 chr3 28035207 28035645 -199488933 + LTR3 LTR ERVK 1 429 0 423 143 14 0 chr3 28035672 28035742 -199488836 + LTR3b LTR ERVK 422 492 -8 225 238 0 0 chr3 28035828 28035870 -199488708 + polypyrimidine Low_complexity Low_complexity 1 42 0 243 219 14 0 chr3 28036959 28037032 -199487546 + L1MC4 LINE L1 6630 6703 -1339 276 130 0 0 chr3 28037032 28037078 -199487500 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 70 0 0 chr3 28037644 28037687 -199486891 + AT_rich Low_complexity Low_complexity 1 43 0 352 324 39 10 chr3 28038055 28038157 -199486421 - L2 LINE L2 -12 3260 3156 2578 198 26 20 chr3 28038269 28038809 -199485769 - MER67A LTR ERV1 0 543 1 324 314 68 0 chr3 28038833 28038951 -199485627 + MIR SINE MIR 65 190 -72 198 0 0 0 chr3 28039421 28039443 -199485135 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr3 28041274 28041295 -199483283 + AT_rich Low_complexity Low_complexity 1 21 0 1746 176 36 9 chr3 28041492 28041822 -199482756 - MER2 DNA MER2_type -5 340 2 1156 169 109 57 chr3 28042697 28043046 -199481532 + MLT1A2 LTR MaLR 1 367 -7 2616 151 16 0 chr3 28043535 28043959 -199480619 - MSTB1 LTR MaLR -1 431 1 811 274 16 40 chr3 28043966 28044218 -199480360 - MIR SINE MIR -10 252 7 337 325 120 16 chr3 28044985 28045176 -199479402 + MIR SINE MIR 52 262 0 218 240 21 62 chr3 28046119 28046215 -199478363 + MIR SINE MIR 116 207 -55 183 379 28 64 chr3 28046844 28047126 -199477452 - L2 LINE L2 -804 2510 2239 325 188 24 0 chr3 28049876 28049961 -199474617 + CT-rich Low_complexity Low_complexity 2 88 0 929 225 64 17 chr3 28050011 28050371 -199474207 - Charlie4a DNA MER1_type -83 425 49 297 323 97 19 chr3 28051052 28051207 -199473371 - MIR SINE MIR -5 257 91 2968 162 15 2 chr3 28051229 28051755 -199472823 + MER39B LTR ERV1 121 653 0 23 33 0 0 chr3 28052000 28052030 -199472548 + AT_rich Low_complexity Low_complexity 1 30 0 1182 259 35 27 chr3 28053591 28053961 -199470617 + MLT1H LTR MaLR 45 417 -132 249 300 64 29 chr3 28054213 28054353 -199470225 - L2 LINE L2 -453 2861 2717 273 289 0 21 chr3 28055137 28055234 -199469344 - MLT1L LTR MaLR -369 246 152 190 370 93 37 chr3 28055422 28055584 -199468994 + L2 LINE L2 2905 3075 -197 2393 121 5 45 chr3 28055850 28056229 -199468349 - THE1B LTR MaLR 0 364 1 11511 100 6 1 chr3 28056229 28057801 -199466777 - THE1B-int LTR MaLR 0 1580 1 2387 123 5 35 chr3 28057801 28058176 -199466402 - THE1B LTR MaLR 0 364 1 687 208 106 106 chr3 28059562 28059735 -199464843 + MER5C DNA MER1_type 1 176 -148 9879 30 4 181 chr3 28059735 28061397 -199463181 - SVA Other Other -4 1382 15 687 208 106 106 chr3 28061397 28061545 -199463033 + MER5C DNA MER1_type 175 322 -2 348 222 78 22 chr3 28061827 28061917 -199462661 + L2 LINE L2 3173 3267 -5 362 313 27 7 chr3 28062560 28062707 -199461871 + MIR SINE MIR 92 241 -21 759 159 94 0 chr3 28062886 28063087 -199461491 - Charlie5 DNA MER1_type 0 2619 2400 364 286 16 16 chr3 28063816 28063942 -199460636 - L1ME LINE L1 -422 5699 5574 2643 123 20 27 chr3 28065215 28065622 -199458956 + MLT2A1 LTR ERVL 1 406 -38 348 24 0 0 chr3 28065622 28065663 -199458915 + (TA)n Simple_repeat Simple_repeat 1 41 0 2643 123 20 27 chr3 28065663 28065702 -199458876 + MLT2A1 LTR ERVL 406 444 0 6635 74 5 0 chr3 28065702 28066585 -199457993 + HERVL-A1 LTR ERVL 1 887 -4767 * 17055 138 12 23 chr3 28066579 28067479 -199457099 - ERVL LTR ERVL -362 5402 4494 200 35 35 0 chr3 28067479 28067508 -199457070 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7492 29 0 0 chr3 28067508 28069115 -199455463 - L1PA4 LINE L1 -16 6139 4534 17055 138 12 23 chr3 28069115 28071068 -199453510 - ERVL LTR ERVL -1268 4496 2579 2694 53 37 0 chr3 28071050 28071424 -199453154 + HERVL-A1 LTR ERVL 5267 5654 0 * 3085 93 18 9 chr3 28071424 28071864 -199452714 + MLT2A1 LTR ERVL 1 444 0 203 287 63 33 chr3 28073105 28073243 -199451335 + MIR SINE MIR 18 160 -56 213 132 0 0 chr3 28073691 28073729 -199450849 + (TG)n Simple_repeat Simple_repeat 2 39 0 1444 258 76 31 chr3 28074821 28075297 -199449281 - MER119 DNA MER1_type -35 548 52 202 261 21 127 chr3 28076014 28076105 -199448473 + MIR3 SINE MIR 79 151 -57 2348 104 21 27 chr3 28076105 28076480 -199448098 - THE1C LTR MaLR 0 375 3 202 261 21 127 chr3 28076480 28076530 -199448048 + MIR3 SINE MIR 151 205 -3 207 184 0 0 chr3 28077269 28077307 -199447271 + (TG)n Simple_repeat Simple_repeat 2 39 0 29 0 0 0 chr3 28077340 28077369 -199447209 + AT_rich Low_complexity Low_complexity 1 29 0 307 261 102 0 chr3 28077588 28077676 -199446902 + MER5A DNA MER1_type 9 105 -84 485 210 80 56 chr3 28078838 28079000 -199445578 - L1ME3 LINE L1 -152 6010 5845 462 238 46 13 chr3 28079105 28079256 -199445322 - L1ME3 LINE L1 -363 5801 5646 1789 264 69 40 chr3 28079297 28080252 -199444326 - L1ME3 LINE L1 -622 5542 4556 29 0 0 0 chr3 28080590 28080619 -199443959 + AT_rich Low_complexity Low_complexity 1 29 0 283 313 246 28 chr3 28080786 28081144 -199443434 + L2 LINE L2 2878 3313 0 26 30 0 0 chr3 28081310 28081343 -199443235 + AT_rich Low_complexity Low_complexity 1 33 0 407 309 1 55 chr3 28081380 28081565 -199443013 + MIR SINE MIR 38 212 -50 309 217 0 0 chr3 28081840 28081900 -199442678 - MIR SINE MIR -122 140 81 817 148 0 0 chr3 28082419 28082547 -199442031 - MER31A LTR ERV1 0 485 358 415 198 37 0 chr3 28082705 28082786 -199441792 + MER2 DNA MER2_type 1 84 -261 243 263 0 18 chr3 28082790 28082847 -199441731 + MER2 DNA MER2_type 290 345 0 267 236 100 36 chr3 28082855 28082965 -199441613 + MLT1I LTR MaLR 27 143 -266 722 315 131 33 chr3 28084400 28084929 -199439649 - L2 LINE L2 0 3313 2738 555 231 57 90 chr3 28084930 28085033 -199439545 - L1MC5 LINE L1 -30 7931 7826 1540 128 11 7 chr3 28085033 28085307 -199439271 + L1MA4 LINE L1 6020 6294 -6 555 231 57 90 chr3 28085307 28085537 -199439041 - L1MC5 LINE L1 -135 7826 7609 1082 250 229 68 chr3 28085585 28086289 -199438289 - L2 LINE L2 -562 2752 1936 253 351 84 13 chr3 28086318 28086472 -199438106 - L2 LINE L2 -1 3312 3148 1529 174 65 0 chr3 28087473 28087748 -199436830 - AluJo SINE Alu -19 293 1 6528 242 83 50 chr3 28087754 28088224 -199436354 + L1MD2 LINE L1 2043 2496 -4257 1047 193 0 17 chr3 28088224 28088457 -199436121 + L1MA6 LINE L1 6071 6299 -1 6528 242 83 50 chr3 28088457 28089801 -199434777 + L1MD2 LINE L1 2496 3794 -2959 2005 146 7 0 chr3 28089801 28090096 -199434482 + AluSx SINE Alu 1 297 -15 6528 242 83 50 chr3 28090096 28092059 -199432519 + L1MD2 LINE L1 3794 5691 -1062 2074 146 0 7 chr3 28092059 28092367 -199432211 + AluSx SINE Alu 6 311 -1 6528 242 83 50 chr3 28092367 28092740 -199431838 + L1MD2 LINE L1 5691 6050 -703 2167 118 3 10 chr3 28092740 28093053 -199431525 + AluSq SINE Alu 1 311 -2 6528 242 83 50 chr3 28093053 28093299 -199431279 + L1MD2 LINE L1 6050 6286 -467 2132 164 80 68 chr3 28093299 28093788 -199430790 + LTR42 LTR ERVL 1 495 0 6528 242 83 50 chr3 28093788 28093910 -199430668 + L1MD2 LINE L1 6286 6736 -17 23 0 0 0 chr3 28094021 28094044 -199430534 + AT_rich Low_complexity Low_complexity 1 23 0 235 371 61 15 chr3 28094618 28094750 -199429828 + MIR3 SINE MIR 20 157 -51 1242 190 126 26 chr3 28095074 28095384 -199429194 + MER2 DNA MER2_type 3 343 -1 1509 171 146 34 chr3 28095407 28095792 -199428786 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr3 28096754 28096783 -199427795 + AT_rich Low_complexity Low_complexity 1 29 0 569 321 29 41 chr3 28097371 28097614 -199426964 + MIR SINE MIR 20 259 -3 415 296 132 0 chr3 28099021 28099173 -199425405 - MLT1K LTR MaLR -17 571 400 441 204 146 0 chr3 28099269 28099406 -199425172 + L1ME LINE L1 5254 5410 -756 249 254 0 0 chr3 28099407 28099478 -199425100 + L1ME LINE L1 5454 5521 -645 * 3272 256 67 61 chr3 28099468 28100033 -199424545 + L1ME2 LINE L1 3190 3750 -2414 313 219 0 98 chr3 28100033 28100115 -199424463 + FLAM_A SINE Alu 3 76 -57 3272 256 67 61 chr3 28100115 28100127 -199424451 + L1ME2 LINE L1 3750 3760 -2404 198 0 0 0 chr3 28100127 28100149 -199424429 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3272 256 67 61 chr3 28100149 28102451 -199422127 + L1ME2 LINE L1 3760 6158 -6 233 358 0 55 chr3 28103167 28103276 -199421302 + MIR3 SINE MIR 79 181 -27 224 275 156 0 chr3 28104099 28104208 -199420370 + L2 LINE L2 3124 3249 -64 24 67 0 0 chr3 28104222 28104267 -199420311 + AT_rich Low_complexity Low_complexity 1 45 0 827 148 61 8 chr3 28105741 28105913 -199418665 + Ricksha DNA DNA 3 289 -1977 * 5636 170 32 29 chr3 28105911 28107298 -199417280 + Ricksha DNA DNA 1821 3246 -25 634 261 11 23 chr3 28107362 28107538 -199417040 + MER45A DNA AcHobo 5 178 0 189 313 234 19 chr3 28109207 28109337 -199415241 + MIR SINE MIR 2 103 -159 844 292 47 35 chr3 28109337 28109738 -199414840 - MLT1I LTR MaLR -3 406 1 189 313 234 19 chr3 28109738 28109821 -199414757 + MIR SINE MIR 103 261 -1 812 163 108 0 chr3 28110602 28110768 -199413810 + L1PB1 LINE L1 17 200 -6663 12990 200 46 25 chr3 28110770 28114037 -199410541 + L1PB1 LINE L1 636 3832 -3035 2197 103 0 7 chr3 28114037 28114338 -199410240 + AluSx SINE Alu 1 299 -13 12990 200 46 25 chr3 28114338 28114829 -199409749 + L1PB1 LINE L1 3832 4311 -2556 7037 56 26 0 chr3 28114829 28115703 -199408875 - MER11D LTR ERVK 0 897 1 12990 200 46 25 chr3 28115703 28116108 -199408470 + L1PB1 LINE L1 4311 4706 -2161 186 103 0 0 chr3 28116108 28116137 -199408441 + (CAA)n Simple_repeat Simple_repeat 2 30 0 12990 200 46 25 chr3 28116137 28117548 -199407030 + L1PB1 LINE L1 4706 6512 -355 357 24 0 0 chr3 28117548 28117590 -199406988 + (CA)n Simple_repeat Simple_repeat 2 43 0 12990 200 46 25 chr3 28117590 28117666 -199406912 + L1PB1 LINE L1 6512 6585 -282 1181 114 11 0 chr3 28117667 28117865 -199406713 + L1PB1 LINE L1 6680 6879 0 3204 116 107 16 chr3 28117889 28118439 -199406139 - MER4A LTR ERV1 0 600 1 358 345 58 26 chr3 28118481 28118707 -199405871 + L1MEd LINE L1 512 744 -5375 290 312 0 0 chr3 28118757 28118834 -199405744 + MER58A DNA MER1_type 5 81 -26 25 65 0 0 chr3 28119228 28119274 -199405304 + AT_rich Low_complexity Low_complexity 1 46 0 202 147 73 0 chr3 28119285 28119353 -199405225 + (TA)n Simple_repeat Simple_repeat 2 74 0 2018 146 79 22 chr3 28119517 28119920 -199404658 - MSTB LTR MaLR 0 426 1 23 33 0 0 chr3 28119981 28120011 -199404567 + AT_rich Low_complexity Low_complexity 1 30 0 2115 98 3 64 chr3 28120218 28120370 -199404208 + AluSx SINE Alu 1 124 -188 2309 98 7 0 chr3 28120370 28120677 -199403901 + AluSp SINE Alu 1 309 -4 2115 98 3 64 chr3 28120677 28120850 -199403728 + AluSx SINE Alu 124 306 -6 579 45 63 9 chr3 28120942 28121053 -199403525 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 321 319 69 0 chr3 28122196 28122312 -199402266 + MIR SINE MIR 19 142 -66 259 264 41 137 chr3 28122586 28122783 -199401795 + MER5B DNA MER1_type 1 178 0 195 279 0 0 chr3 28123116 28123159 -199401419 - MER5A DNA MER1_type -75 114 72 542 296 73 24 chr3 28123345 28123551 -199401027 - MIR SINE MIR -1 261 46 396 0 0 0 chr3 28125999 28126043 -199398535 + (CA)n Simple_repeat Simple_repeat 2 45 0 1949 186 36 64 chr3 28126240 28126740 -199397838 - MER63 DNA MER1_type -3 1057 572 1480 265 79 35 chr3 28127314 28127748 -199396830 - L2 LINE L2 -1234 2080 1616 1982 148 9 29 chr3 28127748 28128092 -199396486 + MER1B DNA MER1_type 1 337 0 1480 265 79 35 chr3 28128092 28128201 -199396377 - L2 LINE L2 -1698 1616 1513 420 55 0 0 chr3 28128646 28128701 -199395877 + (CA)n Simple_repeat Simple_repeat 1 55 0 579 221 5 113 chr3 28129623 28129818 -199394760 + MER20 DNA MER1_type 45 218 -1 227 146 0 24 chr3 28130349 28130390 -199394188 - MER66A LTR ERV1 0 478 439 451 103 0 0 chr3 28130390 28130462 -199394116 - L1PA16 LINE L1 -221 5942 5871 683 256 29 24 chr3 28130575 28130782 -199393796 + L1MC5 LINE L1 7706 7913 -48 892 290 139 7 chr3 28131588 28132012 -199392566 - L1ME3A LINE L1 -258 5912 5433 424 260 26 62 chr3 28132028 28132220 -199392358 - L1ME1 LINE L1 -4 6162 5978 295 175 0 32 chr3 28132222 28132285 -199392293 - L1MEc LINE L1 -6286 110 50 257 233 0 16 chr3 28132287 28132365 -199392213 - L1ME3A LINE L1 -720 5450 5374 414 328 92 0 chr3 28133388 28133583 -199390995 - MIR SINE MIR -3 259 47 1055 214 65 39 chr3 28134892 28134982 -199389596 - L1MD3 LINE L1 0 7995 7909 2129 176 8 5 chr3 28134982 28135368 -199389210 + MLT1B LTR MaLR 1 387 -3 1055 214 65 39 chr3 28135368 28135586 -199388992 - L1MD3 LINE L1 -86 7909 7679 198 362 76 9 chr3 28136579 28136684 -199387894 + MIR3 SINE MIR 12 123 -85 2461 77 0 0 chr3 28136853 28137164 -199387414 + AluY SINE Alu 1 311 0 336 381 26 11 chr3 28137559 28137748 -199386830 + L2 LINE L2 1268 1459 -1855 180 0 0 0 chr3 28138038 28138058 -199386520 + (T)n Simple_repeat Simple_repeat 1 20 0 834 300 10 35 chr3 28138284 28138687 -199385891 - L1ME3A LINE L1 -1978 4168 3776 1393 302 30 21 chr3 28139613 28140269 -199384309 - L1MEc LINE L1 -1978 4237 3576 2029 267 17 37 chr3 28140341 28141170 -199383408 - L1MEc LINE L1 -3057 3158 2347 9468 174 4 15 chr3 28141171 28143737 -199380841 - L1PA14 LINE L1 -3 7596 5000 6260 239 19 21 chr3 28143737 28145503 -199379075 - L1PA14 LINE L1 -3132 4452 2690 1290 156 34 0 chr3 28145513 28145718 -199378860 - L1PA14 LINE L1 -7366 215 4 722 247 58 77 chr3 28145720 28145771 -199378807 - L1MEc LINE L1 -3861 2358 2308 2156 80 0 45 chr3 28145771 28146082 -199378496 + AluSc SINE Alu 2 298 -11 722 247 58 77 chr3 28146082 28146586 -199377992 - L1MEc LINE L1 -3911 2308 1847 540 239 84 0 chr3 28146583 28146738 -199377840 + L1MEc LINE L1 1616 1783 -4613 * 2734 162 29 4 chr3 28146770 28147288 -199377290 + L1MA5 LINE L1 5768 6298 -2 2465 289 67 53 chr3 28147311 28148502 -199376076 - L1MEc LINE L1 -4581 1815 642 2036 78 0 65 chr3 28148502 28148810 -199375768 - AluSc SINE Alu -21 288 1 2465 289 67 53 chr3 28148810 28149016 -199375562 - L1MEc LINE L1 -5754 642 440 225 0 0 0 chr3 28149016 28149041 -199375537 + (TC)n Simple_repeat Simple_repeat 1 25 0 2465 289 67 53 chr3 28149041 28149326 -199375252 - L1MEc LINE L1 -5956 440 108 7023 117 39 80 chr3 28149948 28151303 -199373275 + HSMAR2 DNA Mariner 2 1301 -1 1480 178 12 27 chr3 28151439 28151698 -199372880 + AluJb SINE Alu 1 255 -57 377 181 142 16 chr3 28153346 28153435 -199371143 + L1MD3 LINE L1 7853 7964 -31 1896 169 39 23 chr3 28153435 28153819 -199370759 - MLT1B LTR MaLR 0 390 1 377 181 142 16 chr3 28153819 28153856 -199370722 + L1MD3 LINE L1 7964 7995 0 350 329 93 29 chr3 28154525 28154771 -199369807 - MIR SINE MIR 0 262 1 582 162 0 10 chr3 28154919 28155018 -199369560 + MER4A LTR ERV1 1 98 -566 1723 137 161 75 chr3 28155018 28155390 -199369188 + MER4A LTR ERV1 261 664 0 2660 120 50 51 chr3 28155393 28156081 -199368497 + MER4A-int LTR ERV1 1 832 -5766 11061 103 38 18 chr3 28156097 28156794 -199367784 + MER4A-int LTR ERV1 4810 5492 -1106 2093 115 3 0 chr3 28156794 28157089 -199367489 + AluSc SINE Alu 1 296 -13 11061 103 38 18 chr3 28157089 28158142 -199366436 + MER4A-int LTR ERV1 5492 6595 -3 563 146 10 10 chr3 28158149 28158245 -199366333 + MER4A LTR ERV1 3 98 -566 1536 140 3 83 chr3 28158245 28158608 -199365970 + MER4A LTR ERV1 261 664 0 3957 129 12 70 chr3 28158665 28159408 -199365170 - L1PB4 LINE L1 -1 6155 5456 2414 118 75 19 chr3 28159408 28159832 -199364746 + MER4-int LTR ERV1 5922 6369 -229 4343 237 26 51 chr3 28159832 28161401 -199363177 - L1PB4 LINE L1 -743 5403 3919 1080 261 6 15 chr3 28161417 28161796 -199362782 - L1M2 LINE L1 -3946 2903 2553 9646 223 12 14 chr3 28162289 28165481 -199359097 - L1PA15 LINE L1 0 6165 2947 514 225 7 94 chr3 28166028 28166166 -199358412 - MLT1E1 LTR MaLR -528 126 1 31 44 0 0 chr3 28166257 28166302 -199358276 + AT_rich Low_complexity Low_complexity 1 45 0 2301 130 25 0 chr3 28167226 28167581 -199356997 - THE1B LTR MaLR 0 364 1 13779 157 11 21 chr3 28167672 28168444 -199356134 + Tigger1 DNA MER2_type 3 781 -1637 204 67 0 0 chr3 28168444 28168474 -199356104 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 13779 157 11 21 chr3 28168474 28170134 -199354444 + Tigger1 DNA MER2_type 781 2413 -5 22 70 0 0 chr3 28170199 28170242 -199354336 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr3 28171027 28171053 -199353525 + (CA)n Simple_repeat Simple_repeat 1 26 0 2294 187 37 0 chr3 28171095 28171502 -199353076 - MSTA LTR MaLR 0 428 7 26 0 0 0 chr3 28172194 28172220 -199352358 + AT_rich Low_complexity Low_complexity 1 26 0 362 313 205 40 chr3 28173002 28173229 -199351349 - L1ME3 LINE L1 -278 5884 5696 2218 216 8 31 chr3 28173229 28173743 -199350835 - MLT1D LTR MaLR -3 502 1 362 313 205 40 chr3 28173743 28173866 -199350712 - L1ME3 LINE L1 -466 5696 5476 747 240 57 47 chr3 28173911 28174291 -199350287 - L1MC4 LINE L1 -5 8037 7604 13588 148 19 19 chr3 28174392 28176765 -199347813 - Tigger1 DNA MER2_type -46 2372 1 324 212 61 0 chr3 28176767 28176866 -199347712 - L1MC4a LINE L1 -567 7241 7137 571 248 20 13 chr3 28176909 28177058 -199347520 - L1MC4 LINE L1 -1031 7011 6862 22 56 0 0 chr3 28177517 28177553 -199347025 + AT_rich Low_complexity Low_complexity 1 36 0 1278 213 4 12 chr3 28177740 28177994 -199346584 - MLT1D LTR MaLR -2 503 252 521 222 6 80 chr3 28178036 28178198 -199346380 - MLT1D LTR MaLR -355 150 1 5208 193 25 3 chr3 28178481 28180328 -199344250 - L1PA16 LINE L1 -10 6156 4269 2114 81 0 18 chr3 28180738 28181022 -199343556 + AluY SINE Alu 18 296 -15 181 336 21 86 chr3 28181394 28181439 -199343139 + L2 LINE L2 3183 3229 -84 2600 49 0 0 chr3 28181439 28181743 -199342835 - AluY SINE Alu -7 304 1 181 336 21 86 chr3 28181743 28181837 -199342741 + L2 LINE L2 3229 3313 0 667 293 43 116 chr3 28182565 28182892 -199341686 + LTR16C LTR ERVL 51 339 -152 2058 134 30 33 chr3 28182892 28183257 -199341321 - THE1B LTR MaLR 0 364 1 667 293 43 116 chr3 28183257 28183369 -199341209 + LTR16C LTR ERVL 339 458 -33 34 0 0 0 chr3 28183430 28183464 -199341114 + AT_rich Low_complexity Low_complexity 1 34 0 841 195 11 22 chr3 28183645 28183864 -199340714 + L1MA4 LINE L1 1 376 -4952 1479 140 171 27 chr3 28183864 28184192 -199340386 - THE1C LTR MaLR 0 375 1 841 195 11 22 chr3 28184192 28184237 -199340341 + L1MA4 LINE L1 376 420 -4908 9716 194 38 20 chr3 28184244 28187250 -199337328 + L1MA4 LINE L1 3419 6475 -7 2314 230 106 41 chr3 28187536 28188600 -199335978 + L1MC4a LINE L1 6211 6359 0 243 0 0 0 chr3 28189678 28189705 -199334873 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr3 28190298 28190322 -199334256 + AT_rich Low_complexity Low_complexity 1 24 0 298 315 35 21 chr3 28191054 28191219 -199333359 + MIR SINE MIR 37 205 -57 385 258 137 8 chr3 28191489 28191613 -199332965 - LTR47A LTR ERVL -52 400 261 531 189 0 54 chr3 28191867 28191978 -199332600 - PABL_B-int LTR ERV1 -683 6075 5971 688 360 30 7 chr3 28192180 28192603 -199331975 - PABL_B-int LTR ERV1 -452 6670 6256 302 377 7 0 chr3 28192970 28193108 -199331470 - PABL_B-int LTR ERV1 -1353 5769 5631 297 339 34 43 chr3 28193774 28194101 -199330477 - HERVL18 LTR ERVL -1260 4083 3760 385 342 80 49 chr3 28194380 28195491 -199329087 - HERVL18 LTR ERVL -2431 3616 2314 1312 129 0 80 chr3 28195585 28195810 -199328768 - AluSx SINE Alu -105 207 1 404 350 45 45 chr3 28195873 28196532 -199328046 - HERVL18 LTR ERVL -3360 2105 1483 941 269 17 7 chr3 28196675 28196965 -199327613 - L1PA15-16 LINE L1 -4184 2665 2373 2638 92 95 5 chr3 28196965 28197376 -199327202 - LTR7 LTR ERV1 -2 448 1 2199 115 62 13 chr3 28197376 28197750 -199326828 - HERVH LTR ERV1 0 7713 7322 1406 116 23 0 chr3 28197748 28197963 -199326615 - HERVH LTR ERV1 -1894 5819 5600 * 4303 149 0 1 chr3 28197964 28198627 -199325951 - HERVH LTR ERV1 -2564 5149 4488 3229 123 4 6 chr3 28198629 28199132 -199325446 - HERVH LTR ERV1 -3720 3993 3492 798 159 41 0 chr3 28199122 28199267 -199325311 - HERVH LTR ERV1 -4423 3290 3140 * 19959 100 17 15 chr3 28199261 28202242 -199322336 - HERVH LTR ERV1 -4726 2987 1 2636 87 95 7 chr3 28202244 28202656 -199321922 - LTR7 LTR ERV1 -2 448 1 1781 243 42 136 chr3 28202663 28203875 -199320703 - L1PA15-16 LINE L1 -4476 2373 1276 996 340 83 29 chr3 28204525 28205225 -199319353 - L1M2b LINE L1 -6471 738 1 334 305 123 44 chr3 28206187 28206330 -199318248 + MIR3 SINE MIR 14 178 -84 2555 72 125 5 chr3 28206330 28206730 -199317848 - LTR7 LTR ERV1 -2 448 1 334 305 123 44 chr3 28206730 28206795 -199317783 + MIR3 SINE MIR 178 236 -26 22 56 0 0 chr3 28206801 28206837 -199317741 + AT_rich Low_complexity Low_complexity 1 36 0 775 260 79 63 chr3 28207168 28207918 -199316660 - L1M4 LINE L1 -2696 3450 2689 22 56 0 0 chr3 28207953 28207989 -199316589 + AT_rich Low_complexity Low_complexity 1 36 0 1919 289 84 15 chr3 28208208 28209322 -199315256 - L1ME3A LINE L1 -44 6126 4931 21 0 0 0 chr3 28210575 28210596 -199313982 + AT_rich Low_complexity Low_complexity 1 21 0 306 341 60 51 chr3 28210597 28210949 -199313629 + HAL1b LINE L1 276 630 -718 34 84 0 0 chr3 28211575 28211658 -199312920 + AT_rich Low_complexity Low_complexity 1 83 0 30 27 0 0 chr3 28211774 28211811 -199312767 + AT_rich Low_complexity Low_complexity 1 37 0 950 161 0 46 chr3 28211994 28212168 -199312410 - FRAM SINE Alu -13 163 1 759 229 62 81 chr3 28212226 28212659 -199311919 + L1MC5 LINE L1 7482 7906 -55 5575 71 20 7 chr3 28214313 28215069 -199309509 - MER4E LTR ERV1 0 766 1 198 0 0 0 chr3 28215349 28215371 -199309207 + (A)n Simple_repeat Simple_repeat 1 22 0 7386 146 67 14 chr3 28215932 28217272 -199307306 - MER4E-int LTR ERV1 -113 6645 5235 6597 37 0 0 chr3 28217273 28218055 -199306523 - L1PA5 LINE L1 -20 6134 5353 1718 133 65 19 chr3 28218062 28218669 -199305909 - MER4E-int LTR ERV1 -1532 5226 4448 * 7707 141 76 27 chr3 28218666 28218782 -199305796 - MER4E-int LTR ERV1 -2672 4086 3977 4949 84 5 1 chr3 28218782 28219440 -199305138 - PABL_A LTR ERV1 0 660 1 7707 141 76 27 chr3 28219440 28222009 -199302569 - MER4E-int LTR ERV1 -2781 3977 1444 6427 110 90 53 chr3 28222006 28223148 -199301430 - MER4E-int LTR ERV1 -5588 1170 1 * 5039 85 65 3 chr3 28223148 28223869 -199300709 - MER4E LTR ERV1 0 766 1 321 319 43 17 chr3 28224775 28224891 -199299687 + L3 LINE CR1 1332 1450 -127 351 325 60 15 chr3 28224941 28225091 -199299487 + MIR SINE MIR 6 160 -48 192 135 0 0 chr3 28225273 28225310 -199299268 + (TTG)n Simple_repeat Simple_repeat 3 39 0 203 186 23 23 chr3 28225316 28225359 -199299219 + L3 LINE CR1 1530 1572 -5 1134 182 81 103 chr3 28225868 28226050 -199298528 - LTR37A LTR ERV1 0 426 241 192 97 0 0 chr3 28226050 28226081 -199298497 + (TG)n Simple_repeat Simple_repeat 2 32 0 1134 182 81 103 chr3 28226081 28226294 -199298284 - LTR37A LTR ERV1 -185 241 40 643 251 136 15 chr3 28226295 28226494 -199298084 + MER58A DNA MER1_type 2 224 0 324 344 128 6 chr3 28226535 28226715 -199297863 + MIR SINE MIR 6 207 -55 649 0 123 0 chr3 28227068 28227149 -199297429 - L1PA4 LINE L1 -8 6147 6057 186 333 10 73 chr3 28227162 28227258 -199297320 + MIR3 SINE MIR 108 197 -11 471 286 21 42 chr3 28227540 28227729 -199296849 - MIR SINE MIR -56 206 22 2206 321 128 21 chr3 28228068 28229622 -199294956 - L2 LINE L2 0 3313 1593 249 333 73 34 chr3 28229623 28229800 -199294778 - L2 LINE L2 -2335 979 796 429 280 40 23 chr3 28230036 28230290 -199294288 - L2 LINE L2 -1792 1522 1188 301 291 89 38 chr3 28230591 28230749 -199293829 - L1ME4a LINE L1 -21 6100 5935 613 159 0 37 chr3 28231043 28231150 -199293428 - FLAM_C SINE Alu -12 131 29 226 241 0 0 chr3 28231376 28231434 -199293144 + (TA)n Simple_repeat Simple_repeat 1 58 0 34 0 0 0 chr3 28231680 28231714 -199292864 + AT_rich Low_complexity Low_complexity 1 34 0 273 376 141 12 chr3 28231901 28232319 -199292259 - L2 LINE L2 -353 2961 2490 300 230 81 0 chr3 28232375 28232462 -199292116 + L1M4 LINE L1 2254 2347 -3799 22 56 0 0 chr3 28232571 28232607 -199291971 + AT_rich Low_complexity Low_complexity 1 36 0 1816 159 30 24 chr3 28232633 28232967 -199291611 - MER1B DNA MER1_type 0 337 2 473 199 55 165 chr3 28233484 28233545 -199291033 - LTR37A LTR ERV1 0 426 360 2242 105 3 0 chr3 28233545 28233851 -199290727 + AluSx SINE Alu 1 307 -5 473 199 55 165 chr3 28233851 28234171 -199290407 - LTR37A LTR ERV1 -66 360 87 195 42 0 0 chr3 28234174 28234198 -199290380 + (A)n Simple_repeat Simple_repeat 1 24 0 2058 195 37 24 chr3 28234761 28235222 -199289356 - L1MB8 LINE L1 -122 6056 5590 241 298 61 11 chr3 28235249 28235435 -199289143 + L1M4 LINE L1 5150 5349 -797 2313 101 25 189 chr3 28236034 28236606 -199287972 - LTR12 LTR ERV1 -232 482 5 612 156 23 8 chr3 28237298 28237426 -199287152 - L1MB8 LINE L1 0 6178 6049 3931 161 68 30 chr3 28237428 28238369 -199286209 + MER11C LTR ERVK 1 1071 0 1836 159 30 0 chr3 28238418 28238714 -199285864 + MLT2A2 LTR ERVL 1 305 -148 1153 95 0 12 chr3 28238758 28238927 -199285651 + MLT2A2 LTR ERVL 287 453 0 840 217 88 0 chr3 28238935 28239152 -199285426 - L1MB8 LINE L1 -174 6004 5769 24 100 0 0 chr3 28239173 28239253 -199285325 + AT_rich Low_complexity Low_complexity 1 80 0 14211 185 26 13 chr3 28239600 28239965 -199284613 - L1PB1 LINE L1 0 6867 6508 288 0 0 0 chr3 28239965 28239997 -199284581 + (TG)n Simple_repeat Simple_repeat 2 33 0 14211 185 26 13 chr3 28239997 28245629 -199278949 - L1PB1 LINE L1 -359 6508 636 1127 160 0 0 chr3 28245631 28245831 -199278747 - L1PB1 LINE L1 -6663 200 1 382 248 0 45 chr3 28246780 28246913 -199277665 + A-rich Low_complexity Low_complexity 4 130 0 188 451 0 0 chr3 28248119 28248221 -199276357 + MIR SINE MIR 46 147 -115 239 345 0 0 chr3 28248392 28248476 -199276102 + Charlie8 DNA MER1_type 117 200 -2217 286 318 36 9 chr3 28248690 28248800 -199275778 - LTR16A LTR ERVL -230 220 108 22 56 0 0 chr3 28250446 28250482 -199274096 + AT_rich Low_complexity Low_complexity 1 36 0 628 93 37 19 chr3 28251191 28251298 -199273280 + L1MC3 LINE L1 7667 7775 -10 534 329 58 8 chr3 28251302 28251545 -199273033 + L2 LINE L2 1782 2036 -1278 1370 267 108 109 chr3 28252067 28252527 -199272051 + L2 LINE L2 2141 2600 -713 366 289 11 0 chr3 28252527 28252617 -199271961 - MER81 DNA DNA -9 105 15 1370 267 108 109 chr3 28252617 28253022 -199271556 + L2 LINE L2 2600 3085 -228 222 338 25 38 chr3 28253033 28253113 -199271465 + L2 LINE L2 3194 3272 0 1105 209 50 8 chr3 28253193 28253432 -199271146 + MLT1A1 LTR MaLR 117 365 0 327 49 0 0 chr3 28253436 28253477 -199271101 + (TG)n Simple_repeat Simple_repeat 2 42 0 334 214 0 0 chr3 28253581 28253637 -199270941 + MLT1A1 LTR MaLR 310 365 0 210 143 0 0 chr3 28253655 28253690 -199270888 + (TG)n Simple_repeat Simple_repeat 2 36 0 289 230 43 22 chr3 28253723 28253740 -199270838 + (TA)n Simple_repeat Simple_repeat 1 16 -126 1613 181 57 18 chr3 28253740 28254071 -199270507 - MER7A DNA MER2_type 0 346 5 289 230 43 22 chr3 28254071 28254192 -199270386 + (TA)n Simple_repeat Simple_repeat 16 142 0 260 327 132 59 chr3 28254196 28254774 -199269804 + L2 LINE L2 2246 2865 -449 2158 151 32 17 chr3 28254791 28255202 -199269376 - MER61C LTR ERV1 -4 430 14 497 333 71 87 chr3 28255242 28255608 -199268970 + L2 LINE L2 2896 3257 -15 333 0 0 0 chr3 28255608 28255645 -199268933 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 497 333 71 87 chr3 28255645 28255656 -199268922 + L2 LINE L2 3257 3267 -5 551 329 14 19 chr3 28256616 28256826 -199267752 - MLT1J LTR MaLR -302 209 1 6899 199 91 10 chr3 28257736 28259569 -199265009 - Charlie5 DNA MER1_type 0 2624 644 1070 173 54 15 chr3 28259890 28260150 -199264428 - L1MA8 LINE L1 -3 6288 6019 4921 166 83 77 chr3 28260150 28260744 -199263834 - L1MA8 LINE L1 -477 5814 5225 3051 188 5 2 chr3 28260744 28261319 -199263259 - L1PA16 LINE L1 -9 6157 5581 4921 166 83 77 chr3 28261319 28261570 -199263008 - L1MA8 LINE L1 -1066 5225 4977 2025 103 4 0 chr3 28261570 28261842 -199262736 - AluSx SINE Alu -39 273 1 4921 166 83 77 chr3 28261842 28262366 -199262212 - L1MA8 LINE L1 -1314 4977 4433 2163 88 0 7 chr3 28262366 28262684 -199261894 - AluY SINE Alu 0 316 1 4921 166 83 77 chr3 28262684 28263178 -199261400 - L1MA8 LINE L1 -1858 4433 3943 2293 194 30 10 chr3 28263196 28263700 -199260878 - Charlie5 DNA MER1_type -2098 514 1 608 245 104 61 chr3 28264231 28264770 -199259808 - L1MC5 LINE L1 -70 7891 7330 327 289 128 22 chr3 28264814 28264994 -199259584 - HAL1 LINE L1 -2296 211 13 297 330 26 0 chr3 28265351 28265466 -199259112 + L2 LINE L2 3196 3313 0 29 0 0 0 chr3 28267308 28267337 -199257241 + AT_rich Low_complexity Low_complexity 1 29 0 763 209 32 51 chr3 28268703 28268760 -199255818 - L1M4 LINE L1 -3010 3634 3577 2025 130 7 0 chr3 28268760 28269061 -199255517 - AluSq SINE Alu -10 303 1 763 209 32 51 chr3 28269061 28269256 -199255322 - L1M4 LINE L1 -3067 3577 3387 964 251 7 39 chr3 28269374 28269657 -199254921 - L1M4 LINE L1 -6268 274 1 4042 118 21 6 chr3 28269658 28270284 -199254294 - MER41B LTR ERV1 0 635 1 411 276 61 33 chr3 28270386 28270567 -199254011 - MIR SINE MIR -14 248 63 276 375 19 0 chr3 28270623 28270727 -199253851 + L3 LINE CR1 1445 1550 -27 * 296 307 98 7 chr3 28270717 28270870 -199253708 - MIR SINE MIR -10 252 86 202 320 25 66 chr3 28270909 28271031 -199253547 - L3 LINE CR1 -211 1366 1250 563 293 99 9 chr3 28271066 28271298 -199253280 - MIR SINE MIR -1 261 9 491 355 35 27 chr3 28271979 28272235 -199252343 - MIR SINE MIR 0 262 5 5170 264 31 20 chr3 28272640 28275726 -199248852 - L1PA13 LINE L1 -3231 3566 2 1324 196 38 66 chr3 28276334 28276745 -199247833 + MER67C LTR ERV1 1 403 -243 358 204 155 63 chr3 28276760 28276902 -199247676 + MER67D LTR ERV1 360 514 0 300 322 98 58 chr3 28276993 28277403 -199247175 + L1ME LINE L1 5360 5785 -336 22 94 0 0 chr3 28278445 28278509 -199246069 + AT_rich Low_complexity Low_complexity 1 64 0 397 382 41 0 chr3 28278557 28278777 -199245801 - MIR SINE MIR -3 259 31 2724 10 0 16 chr3 28278878 28279192 -199245386 - AluYb8 SINE Alu -9 309 1 14478 180 25 10 chr3 28279444 28284127 -199240451 - L1MA2 LINE L1 0 7723 2971 39 0 0 0 chr3 28284232 28284271 -199240307 + AT_rich Low_complexity Low_complexity 1 39 0 193 290 65 0 chr3 28285107 28285169 -199239409 - MIR SINE MIR -116 146 81 994 204 95 0 chr3 28285475 28285739 -199238839 - MER33 DNA MER1_type -4 320 32 509 324 89 22 chr3 28286294 28286609 -199237969 - MLT1J1 LTR MaLR -110 336 1 1156 152 22 0 chr3 28289276 28289460 -199235118 + MER6B DNA MER2_type 4 191 -19 1113 177 58 8 chr3 28290096 28290339 -199234239 + L1PA15 LINE L1 2392 2646 -3500 5722 122 24 0 chr3 28290339 28291586 -199232992 + L1PA15 LINE L1 4897 6165 0 363 290 148 23 chr3 28291713 28291889 -199232689 - L2 LINE L2 -850 2464 2267 21 0 0 0 chr3 28292400 28292421 -199232157 + AT_rich Low_complexity Low_complexity 1 21 0 717 293 112 48 chr3 28293093 28293623 -199230955 + MLT1G1 LTR MaLR 1 595 0 21 36 0 0 chr3 28293989 28294017 -199230561 + AT_rich Low_complexity Low_complexity 1 28 0 459 298 0 8 chr3 28296244 28296368 -199228210 + MLT1E LTR MaLR 1 123 -470 1144 139 5 45 chr3 28296443 28296644 -199227934 - AluSx SINE Alu -119 193 1 980 35 28 7 chr3 28296698 28296839 -199227739 + (TTTC)n Simple_repeat Simple_repeat 2 145 0 189 380 83 0 chr3 28297429 28297537 -199227041 + L2 LINE L2 3151 3267 -5 233 343 0 0 chr3 28298562 28298632 -199225946 - MLT1J LTR MaLR -332 179 110 417 275 119 50 chr3 28299239 28299422 -199225156 + MIR SINE MIR 21 223 -39 729 195 97 31 chr3 28299422 28299617 -199224961 - MER3 DNA MER1_type 0 209 2 417 275 119 50 chr3 28299617 28299651 -199224927 + MIR SINE MIR 223 253 -9 292 306 57 16 chr3 28299806 28299930 -199224648 + L2 LINE L2 3185 3313 0 22 0 0 0 chr3 28300180 28300202 -199224376 + AT_rich Low_complexity Low_complexity 1 22 0 281 265 0 59 chr3 28300557 28300625 -199223953 - MLT1J2 LTR MaLR 0 450 387 209 180 20 0 chr3 28302544 28302594 -199221984 + (TG)n Simple_repeat Simple_repeat 2 52 0 1121 300 109 3 chr3 28303420 28303797 -199220781 - LTR16A LTR ERVL 0 450 34 356 250 29 0 chr3 28303920 28304024 -199220554 + L1ME3A LINE L1 5842 5948 -222 252 0 0 0 chr3 28304069 28304097 -199220481 + (CA)n Simple_repeat Simple_repeat 1 28 0 2058 115 7 3 chr3 28304291 28304595 -199219983 + AluSx SINE Alu 1 305 -7 245 339 103 0 chr3 28304920 28305085 -199219493 - MIR SINE MIR -1 261 80 15593 177 43 12 chr3 28305827 28308735 -199215843 - L1M1 LINE L1 -4553 3012 15 1035 72 7 0 chr3 28309886 28310024 -199214554 + L1PA10 LINE L1 6021 6159 -9 246 156 0 0 chr3 28310155 28310200 -199214378 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 375 212 40 30 chr3 28311534 28311633 -199212945 - MIR SINE MIR -73 189 90 242 259 0 24 chr3 28312613 28312698 -199211880 - L1MC4 LINE L1 -1346 6696 6614 232 208 14 42 chr3 28312654 28312726 -199211852 + L1MCa LINE L1 1995 2064 -4362 * 264 212 0 0 chr3 28312726 28312792 -199211786 + (TA)n Simple_repeat Simple_repeat 1 66 0 291 191 0 96 chr3 28312796 28312890 -199211688 + L1MC4 LINE L1 6619 6703 -1339 1055 231 46 10 chr3 28312922 28313225 -199211353 - L1ME2 LINE L1 -143 6021 5708 314 111 0 0 chr3 28313640 28313694 -199210884 - L1MA7 LINE L1 -1 6290 6237 1949 92 5 0 chr3 28313699 28314092 -199210486 - L1PA13 LINE L1 -6 6157 5679 644 103 32 48 chr3 28314089 28314129 -199210449 - L1PA13 LINE L1 -925 5221 5182 * 180 0 0 0 chr3 28314129 28314149 -199210429 + (TTG)n Simple_repeat Simple_repeat 2 21 0 644 103 32 48 chr3 28314149 28314234 -199210344 - L1PA13 LINE L1 -964 5182 5098 333 0 0 0 chr3 28314492 28314529 -199210049 + (CA)n Simple_repeat Simple_repeat 1 37 0 233 275 116 43 chr3 28314900 28315038 -199209540 - MER5A DNA MER1_type -6 183 36 211 313 86 47 chr3 28314925 28315053 -199209525 + MER5A DNA MER1_type 46 178 -11 * 442 271 144 6 chr3 28315056 28315214 -199209364 + MER5A DNA MER1_type 6 188 -1 27212 128 13 76 chr3 28315254 28320590 -199203988 + L1P LINE L1 2 4997 -1149 301 93 0 0 chr3 28320590 28320633 -199203945 + Charlie5 DNA MER1_type 2515 2557 -55 1817 181 63 11 chr3 28320634 28320998 -199203580 + MSTD LTR MaLR 1 383 -13 3624 21 0 0 chr3 28320998 28321434 -199203144 - L1P LINE L1 -784 5362 4927 3060 54 0 0 chr3 28321436 28321822 -199202756 + L1PA5 LINE L1 5769 6154 0 23 0 0 0 chr3 28321822 28321845 -199202733 + AT_rich Low_complexity Low_complexity 1 23 0 398 93 0 0 chr3 28321846 28321900 -199202678 + MSTD LTR MaLR 404 457 0 23 0 0 0 chr3 28322418 28322441 -199202137 + AT_rich Low_complexity Low_complexity 1 23 0 1561 282 83 18 chr3 28322449 28323211 -199201367 - L1M4 LINE L1 -1252 4894 4084 868 237 0 0 chr3 28323206 28323362 -199201216 - L1MDa LINE L1 -6365 175 20 * 184 278 103 62 chr3 28324115 28324212 -199200366 + MIR SINE MIR 118 218 -44 275 318 135 14 chr3 28324508 28324656 -199199922 - L2 LINE L2 -1 3312 3147 246 299 0 28 chr3 28525466 28525573 -198999005 - MLT1E LTR MaLR -489 104 1 315 211 25 111 chr3 28525574 28525773 -198998805 - L1MC/D LINE L1 -2371 5437 5256 2469 77 3 0 chr3 28525831 28526141 -198998437 - AluY SINE Alu 0 311 1 312 27 0 0 chr3 28526180 28526217 -198998361 + (CA)n Simple_repeat Simple_repeat 2 38 0 2511 231 39 13 chr3 28526230 28526284 -198998294 + L1MCa LINE L1 1996 2047 -4379 2018 155 24 3 chr3 28526284 28526619 -198997959 + MER7A DNA MER2_type 4 343 -3 2511 231 39 13 chr3 28526619 28527824 -198996754 + L1MCa LINE L1 2047 3289 -3137 3102 184 10 0 chr3 28527839 28528354 -198996224 + Tigger7 DNA MER2_type 2 521 -212 390 240 0 42 chr3 28528353 28528364 -198996214 + Tigger7 DNA MER2_type 2396 2406 -81 * 1159 170 49 0 chr3 28528364 28528588 -198995990 - MER46A DNA MER2_type 0 236 2 390 240 0 42 chr3 28528588 28528672 -198995906 + Tigger7 DNA MER2_type 2406 2487 0 7651 83 9 10 chr3 28528672 28530526 -198994052 + L1PA7 LINE L1 4288 6154 0 2719 249 43 9 chr3 28530537 28531350 -198993228 + L1MCa LINE L1 3308 4148 -2278 23 54 0 0 chr3 28532405 28532442 -198992136 + AT_rich Low_complexity Low_complexity 1 37 0 511 189 180 0 chr3 28533829 28533940 -198990638 - FLAM_A SINE Alu -2 131 1 283 326 0 76 chr3 28534974 28535106 -198989472 - MER5A DNA MER1_type -24 165 44 2001 178 6 8 chr3 28537939 28538305 -198986273 - MLT1A1 LTR MaLR 0 365 1 337 303 34 109 chr3 28539133 28539308 -198985270 + MIR3 SINE MIR 43 204 -4 359 229 181 9 chr3 28540081 28540186 -198984392 - L2 LINE L2 0 3313 3191 679 229 0 0 chr3 28540781 28540899 -198983679 - FLAM_A SINE Alu -15 118 1 276 293 75 75 chr3 28540965 28541296 -198983282 - L2 LINE L2 -842 2472 2142 29 70 0 0 chr3 28541298 28541355 -198983223 + AT_rich Low_complexity Low_complexity 1 57 0 298 332 74 11 chr3 28542135 28542325 -198982253 - L2 LINE L2 -1378 1936 1735 789 181 51 59 chr3 28542380 28542584 -198981994 + MER33 DNA MER1_type 51 254 -2331 1537 224 34 6 chr3 28542584 28542937 -198981641 - MLT1A1 LTR MaLR 0 365 3 789 181 51 59 chr3 28542937 28542986 -198981592 + MER33 DNA MER1_type 254 302 -22 190 354 13 0 chr3 28544926 28545005 -198979573 - L2 LINE L2 -665 2649 2570 517 186 150 0 chr3 28545085 28545198 -198979380 - FLAM_C SINE Alu -2 131 2 533 284 130 14 chr3 28545262 28545477 -198979101 - MIR SINE MIR -8 254 15 31 26 0 0 chr3 28545558 28545596 -198978982 + AT_rich Low_complexity Low_complexity 1 38 0 2198 103 0 0 chr3 28545596 28545935 -198978643 + AluY SINE Alu 1 339 0 2645 61 0 0 chr3 28546412 28546723 -198977855 + AluY SINE Alu 1 311 0 610 276 65 40 chr3 28546848 28547379 -198977199 - MLT1H LTR MaLR 0 595 1 276 30 0 0 chr3 28547391 28547424 -198977154 + (A)n Simple_repeat Simple_repeat 1 33 0 1980 205 143 72 chr3 28547587 28548458 -198976120 - LTR28 LTR ERV1 0 1020 3 23 54 0 0 chr3 28548465 28548502 -198976076 + AT_rich Low_complexity Low_complexity 1 37 0 378 180 288 14 chr3 28548571 28548710 -198975868 - MIR SINE MIR 0 262 86 180 158 0 0 chr3 28549364 28549402 -198975176 + GA-rich Low_complexity Low_complexity 2 39 0 22 35 0 0 chr3 28551128 28551157 -198973421 + AT_rich Low_complexity Low_complexity 1 29 0 2584 189 44 17 chr3 28551196 28551737 -198972841 - LTR38 LTR ERV1 0 556 1 21 36 0 0 chr3 28552676 28552704 -198971874 + AT_rich Low_complexity Low_complexity 1 28 0 340 288 17 0 chr3 28552951 28553069 -198971509 - MIR SINE MIR -12 250 131 232 349 48 0 chr3 28553571 28553654 -198970924 - L2 LINE L2 -2 3270 3184 584 303 150 57 chr3 28553744 28553873 -198970705 - L2 LINE L2 -645 2669 2553 2665 36 0 3 chr3 28553873 28554180 -198970398 - AluY SINE Alu -5 306 1 584 303 150 57 chr3 28554180 28554469 -198970109 - L2 LINE L2 -761 2553 2212 399 333 55 36 chr3 28556406 28556571 -198968007 + L2 LINE L2 3104 3271 -1 556 325 32 67 chr3 28556834 28557210 -198967368 + L1M4c LINE L1 414 776 -5527 2772 262 46 23 chr3 28557405 28558537 -198966041 + L1M4c LINE L1 777 1825 -4516 7091 124 26 44 chr3 28558600 28559466 -198965112 + L1PA11 LINE L1 4046 4926 -1248 2156 110 0 0 chr3 28559466 28559770 -198964808 + AluSg SINE Alu 1 304 0 7091 124 26 44 chr3 28559770 28560227 -198964351 + L1PA11 LINE L1 4926 5390 -784 2223 133 0 0 chr3 28560227 28560528 -198964050 - AluSq SINE Alu -12 301 1 1511 58 39 10 chr3 28560534 28560741 -198963837 - L1PA7 LINE L1 -1 6153 5941 7091 124 26 44 chr3 28560741 28561569 -198963009 + L1PA11 LINE L1 5395 6174 0 6486 234 41 19 chr3 28561586 28562424 -198962154 + L1M4c LINE L1 2013 2831 -3551 255 103 0 0 chr3 28562424 28562463 -198962115 + (CA)n Simple_repeat Simple_repeat 2 40 0 6486 234 41 19 chr3 28562463 28562799 -198961779 + L1M4c LINE L1 2831 3158 -3224 1376 174 4 4 chr3 28562799 28563035 -198961543 + MER46A DNA MER2_type 1 236 0 6486 234 41 19 chr3 28563035 28564095 -198960483 + L1M4c LINE L1 3158 4299 -2083 929 228 25 5 chr3 28565101 28565303 -198959275 + MER3 DNA MER1_type 4 209 0 2002 141 3 0 chr3 28565341 28565638 -198958940 - AluSx SINE Alu -14 298 1 1030 306 49 82 chr3 28565844 28566371 -198958207 - MLT2E LTR ERVL -118 510 1 7266 230 64 77 chr3 28567632 28567724 -198956854 + L1M2 LINE L1 82 174 -6674 1953 141 52 47 chr3 28567724 28568086 -198956492 - THE1B LTR MaLR 0 364 1 11114 101 20 4 chr3 28568086 28569641 -198954937 - THE1B-int LTR MaLR 0 1580 1 2322 131 5 32 chr3 28569641 28570015 -198954563 - THE1B LTR MaLR 0 364 1 7266 230 64 77 chr3 28570015 28571492 -198953086 + L1M2 LINE L1 172 1667 -5181 297 0 0 0 chr3 28571492 28571525 -198953053 + (CA)n Simple_repeat Simple_repeat 2 34 0 7266 230 64 77 chr3 28571525 28572226 -198952352 + L1M2 LINE L1 1667 2376 -4472 1803 132 57 48 chr3 28572226 28572598 -198951980 - THE1C LTR MaLR 0 375 1 7266 230 64 77 chr3 28572598 28573859 -198950719 + L1M2 LINE L1 2376 3572 -3276 321 26 0 0 chr3 28573863 28573901 -198950677 + (TG)n Simple_repeat Simple_repeat 1 38 0 209 179 48 0 chr3 28573909 28573993 -198950585 + (TA)n Simple_repeat Simple_repeat 1 88 0 1532 82 5 0 chr3 28573993 28574201 -198950377 - L1P5 LINE L1 -360 5791 5583 852 277 89 15 chr3 28574320 28574714 -198949864 + L1MC4a LINE L1 5525 5947 -1861 26 82 0 0 chr3 28574877 28574938 -198949640 + AT_rich Low_complexity Low_complexity 1 61 0 39506 33 18 2 chr3 28574996 28581028 -198943550 - L1PA2 LINE L1 0 6155 1 378 266 28 28 chr3 28581033 28581176 -198943402 - L1ME LINE L1 -377 5744 5602 586 324 72 52 chr3 28582361 28582762 -198941816 + LTR16C LTR ERVL 73 481 -10 528 288 33 84 chr3 28583618 28583892 -198940686 + MLT1J LTR MaLR 7 266 -245 448 222 40 0 chr3 28584386 28584485 -198940093 - MIR SINE MIR -61 201 99 198 359 39 31 chr3 28586135 28586263 -198938315 + MIR3 SINE MIR 31 159 -49 968 177 70 0 chr3 28586634 28586677 -198937901 + MER3 DNA MER1_type 5 60 -149 319 239 132 44 chr3 28586677 28586836 -198937742 - MER3 DNA MER1_type 0 209 37 314 280 0 32 chr3 28587526 28587619 -198936959 - L1MC4 LINE L1 -1339 6703 6614 459 63 84 21 chr3 28587623 28587766 -198936812 + (TA)n Simple_repeat Simple_repeat 1 152 0 281 303 28 84 chr3 28587999 28588057 -198936521 - MIR3 SINE MIR -40 168 108 1338 186 70 0 chr3 28588057 28588358 -198936220 + MER33 DNA MER1_type 3 324 0 281 303 28 84 chr3 28588358 28588441 -198936137 - MIR3 SINE MIR -100 108 35 865 100 0 90 chr3 28588572 28588772 -198935806 + AluSg SINE Alu 39 220 -90 216 0 0 0 chr3 28588856 28588880 -198935698 + (A)n Simple_repeat Simple_repeat 1 24 0 32 0 0 0 chr3 28588931 28588963 -198935615 + AT_rich Low_complexity Low_complexity 1 32 0 43 101 0 0 chr3 28589409 28589488 -198935090 + AT_rich Low_complexity Low_complexity 1 79 0 980 128 0 4 chr3 28590211 28590462 -198934116 + (TA)n Simple_repeat Simple_repeat 1 250 0 234 0 0 0 chr3 28590461 28590487 -198934091 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 535 299 13 28 chr3 28590490 28590574 -198934004 + L1ME LINE L1 5086 5170 -992 1611 170 3 27 chr3 28590574 28590874 -198933704 + AluJb SINE Alu 1 293 -19 535 299 13 28 chr3 28590874 28591260 -198933318 + L1ME LINE L1 5170 5550 -612 1077 152 0 34 chr3 28591545 28591723 -198932855 + FRAM SINE Alu 1 164 -12 25 0 0 0 chr3 28591953 28591978 -198932600 + AT_rich Low_complexity Low_complexity 1 25 0 600 221 52 29 chr3 28592574 28592783 -198931795 + LTR41 LTR ERVL 1 244 -551 496 196 20 131 chr3 28592970 28593169 -198931409 + LTR41 LTR ERVL 496 672 -101 336 188 21 52 chr3 28593255 28593351 -198931227 + LTR41 LTR ERVL 675 767 -6 343 306 115 6 chr3 28594863 28594966 -198929612 + MIR SINE MIR 37 164 -98 2498 170 12 0 chr3 28594966 28595389 -198929189 - MSTA LTR MaLR 0 428 1 343 306 115 6 chr3 28595389 28595442 -198929136 + MIR SINE MIR 164 210 -52 530 92 0 13 chr3 28595526 28595602 -198928976 - MADE1 DNA Mariner -5 75 1 597 248 87 34 chr3 28595840 28596046 -198928532 - L1ME3A LINE L1 -11 6159 5943 433 294 56 7 chr3 28596095 28596238 -198928340 - L2 LINE L2 -5 3308 3159 295 297 14 22 chr3 28596617 28596755 -198927823 + MER103 DNA DNA 10 146 -20 923 131 0 7 chr3 28596844 28596989 -198927589 - MER39 LTR ERV1 0 707 564 600 232 114 29 chr3 28596983 28597308 -198927270 - MER39 LTR ERV1 -272 435 1 * 724 251 94 0 chr3 28598636 28598827 -198925751 + MER63A DNA MER1_type 2 210 0 231 277 235 8 chr3 28598978 28599097 -198925481 - Charlie8 DNA MER1_type -2138 279 134 266 311 135 14 chr3 28599921 28600069 -198924509 + L2 LINE L2 3147 3312 -1 184 278 103 62 chr3 28600365 28600462 -198924116 - MIR SINE MIR -44 218 118 1507 108 33 11 chr3 28600835 28601158 -198923420 - L1P5 LINE L1 -628 5523 5196 312 293 150 15 chr3 28601628 28601761 -198922817 - MIR SINE MIR -25 237 87 427 194 5 1 chr3 28602067 28602154 -198922424 - MLT1E2 LTR MaLR 0 626 504 396 250 73 0 chr3 28602155 28602275 -198922303 - MLT1E2 LTR MaLR -125 380 228 2501 83 123 5 chr3 28602284 28602683 -198921895 + LTR7 LTR ERV1 3 448 -2 620 114 0 0 chr3 28602685 28602773 -198921805 + HERVH LTR ERV1 1 88 -7625 * 14847 91 8 22 chr3 28602766 28604977 -198919601 + HERVH LTR ERV1 817 2995 -4718 6000 101 1 2 chr3 28604956 28605811 -198918767 + HERVH LTR ERV1 3140 3993 -3720 * 4445 133 1 3 chr3 28605813 28606476 -198918102 + HERVH LTR ERV1 4488 5149 -2564 1333 123 38 0 chr3 28606477 28606689 -198917889 + HERVH LTR ERV1 5600 5819 -1894 * 2426 87 50 16 chr3 28606687 28607065 -198917513 + HERVH LTR ERV1 7322 7712 -1 10791 178 56 22 chr3 28607278 28610732 -198913846 + L1MA4A LINE L1 2648 6228 -75 2000 124 17 3 chr3 28610732 28611031 -198913547 - AluSp SINE Alu -10 303 1 10791 178 56 22 chr3 28611031 28611103 -198913475 + L1MA4A LINE L1 6228 6296 -7 456 199 74 48 chr3 28611348 28611515 -198913063 - MIR SINE MIR -46 216 45 1041 70 0 7 chr3 28611610 28611752 -198912826 - L1PA7 LINE L1 -134 6020 5880 2166 164 35 35 chr3 28613301 28613758 -198910820 + MSTB2 LTR MaLR 1 457 0 924 153 5 48 chr3 28614521 28614710 -198909868 - L1PA3 LINE L1 0 6155 5975 1059 291 43 76 chr3 28615508 28616241 -198908337 + L2 LINE L2 2541 3253 -60 376 280 10 20 chr3 28616480 28616580 -198907998 + L2 LINE L2 3215 3313 0 22 35 0 0 chr3 28616969 28616998 -198907580 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 28618184 28618216 -198906362 + AT_rich Low_complexity Low_complexity 1 32 0 2216 178 20 0 chr3 28618483 28618877 -198905701 - Tigger1 DNA MER2_type 0 2418 2017 * 8025 153 32 24 chr3 28618869 28620292 -198904286 - Tigger1 DNA MER2_type -976 1442 8 1356 248 56 50 chr3 28621019 28621519 -198903059 - MLT1D LTR MaLR 0 505 3 356 271 84 54 chr3 28621660 28621826 -198902752 - MIR SINE MIR -76 186 16 605 238 93 6 chr3 28621925 28622097 -198902481 - MER5A DNA MER1_type 0 189 3 704 173 30 6 chr3 28622209 28622377 -198902201 + GA-rich Low_complexity Low_complexity 1 172 0 283 239 15 30 chr3 28622443 28622510 -198902068 - MIR SINE MIR -96 112 47 231 114 0 0 chr3 28624566 28624601 -198899977 + (CAT)n Simple_repeat Simple_repeat 2 36 0 399 285 123 17 chr3 28624660 28624839 -198899739 - MIR SINE MIR -3 259 62 537 278 7 7 chr3 28624901 28625052 -198899526 + MER5B DNA MER1_type 26 176 -2 422 256 8 26 chr3 28626030 28626147 -198898431 - L2 LINE L2 0 3313 3199 27 0 0 0 chr3 28627507 28627534 -198897044 + AT_rich Low_complexity Low_complexity 1 27 0 755 262 51 65 chr3 28627863 28628199 -198896379 - MLT1I LTR MaLR -8 401 71 523 178 101 28 chr3 28628492 28628697 -198895881 - MER106B DNA MER1_type -6 1053 12 420 311 25 78 chr3 28628901 28629145 -198895433 + MIR SINE MIR 2 232 -30 563 216 159 0 chr3 28629542 28629637 -198894941 - L1 LINE L1 -2822 3324 3245 243 0 0 0 chr3 28629637 28629664 -198894914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 563 216 159 0 chr3 28629664 28629813 -198894765 - L1 LINE L1 -2901 3245 3041 1948 81 4 4 chr3 28629817 28630064 -198894514 + AluSg SINE Alu 50 296 -14 21 0 0 0 chr3 28630100 28630121 -198894457 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 28632070 28632096 -198892482 + (GA)n Simple_repeat Simple_repeat 1 26 0 2304 90 3 0 chr3 28632800 28633100 -198891478 - AluSc SINE Alu -8 301 1 394 245 57 19 chr3 28637275 28637381 -198887197 + MER91B DNA MER1_type 11 120 -70 4645 115 22 0 chr3 28637406 28638075 -198886503 - LTR12 LTR ERV1 0 688 5 2437 185 46 24 chr3 28638091 28638680 -198885898 - pTR5 LTR ERV1 -1094 1344 743 248 320 58 19 chr3 28638683 28638786 -198885792 + MER91B DNA MER1_type 83 189 -1 290 179 164 0 chr3 28639162 28639229 -198885349 - MER116 DNA Mariner -1 79 2 23 33 0 0 chr3 28639257 28639287 -198885291 + AT_rich Low_complexity Low_complexity 1 30 0 582 224 106 12 chr3 28639287 28639448 -198885130 + MER58C DNA MER1_type 40 215 0 198 0 0 0 chr3 28640454 28640476 -198884102 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 330 324 25 28 chr3 28640970 28641148 -198883430 - MER5A DNA MER1_type -3 186 1 180 380 92 5 chr3 28641221 28641405 -198883173 + L2 LINE L2 1917 2116 -1198 757 226 164 5 chr3 28641494 28641702 -198882876 + MIR SINE MIR 15 255 -7 591 337 129 30 chr3 28641713 28642674 -198881904 + L2 LINE L2 2211 3272 0 26 0 0 0 chr3 28642783 28642809 -198881769 + AT_rich Low_complexity Low_complexity 1 26 0 7128 14 0 7 chr3 28642815 28643642 -198880936 - L1PA3 LINE L1 0 6155 5335 * 11655 30 1 2 chr3 28643639 28645048 -198879530 + L1P LINE L1 3965 5371 -775 374 301 51 45 chr3 28645420 28645596 -198878982 - MIR3 SINE MIR -13 195 19 728 120 40 32 chr3 28646102 28646227 -198878351 + THE1B LTR MaLR 1 126 -238 30572 105 8 11 chr3 28646251 28651963 -198872615 - L1PA7 LINE L1 -14 6455 748 1469 136 41 21 chr3 28651964 28652207 -198872371 + THE1B LTR MaLR 117 364 0 11269 113 2 2 chr3 28652207 28653787 -198870791 + THE1B-int LTR MaLR 1 1580 0 1588 115 37 34 chr3 28653789 28654058 -198870520 + THE1B LTR MaLR 3 272 -92 182 364 17 59 chr3 28654358 28654476 -198870102 + MIR3 SINE MIR 15 127 -81 27 0 0 0 chr3 28656448 28656475 -198868103 + AT_rich Low_complexity Low_complexity 1 27 0 1792 179 0 3 chr3 28657288 28657620 -198866958 + AluJb SINE Alu 1 331 0 1295 264 32 14 chr3 28657694 28658038 -198866540 + LTR16A LTR ERVL 92 441 -9 232 342 54 18 chr3 28659342 28659453 -198865125 - L2 LINE L2 0 3272 3158 609 276 85 51 chr3 28659924 28660218 -198864360 + MLT1J1 LTR MaLR 126 429 -17 21 0 0 0 chr3 28660505 28660526 -198864052 + AT_rich Low_complexity Low_complexity 1 21 0 5821 159 37 4 chr3 28661595 28663219 -198861359 - L1MA5 LINE L1 -13 6287 4608 2229 185 33 31 chr3 28663215 28663729 -198860849 - L1MA5 LINE L1 -2327 3819 3305 * 294 154 96 0 chr3 28663729 28663781 -198860797 - AluS SINE Alu -246 57 1 21 36 0 0 chr3 28663993 28664021 -198860557 + AT_rich Low_complexity Low_complexity 1 28 0 285 334 151 30 chr3 28664401 28664901 -198859677 - L2 LINE L2 -5 3308 2672 243 315 40 27 chr3 28664905 28665054 -198859524 + L1MEd LINE L1 3 153 -5966 312 285 65 0 chr3 28665507 28665630 -198858948 + L1MEd LINE L1 702 832 -5287 1218 201 35 50 chr3 28665793 28666076 -198858502 + AluJo SINE Alu 11 289 -23 974 277 129 22 chr3 28666078 28666272 -198858306 + L1M4 LINE L1 4078 4250 -1896 2228 114 0 0 chr3 28666272 28666571 -198858007 + AluSq SINE Alu 1 299 -14 974 277 129 22 chr3 28666571 28667261 -198857317 + L1M4 LINE L1 4250 5055 -1091 613 114 0 0 chr3 28667296 28667384 -198857194 + AluY SINE Alu 3 90 -221 265 152 22 0 chr3 28667515 28667561 -198857017 + THE1A LTR MaLR 309 355 0 27 0 0 0 chr3 28668140 28668167 -198856411 + AT_rich Low_complexity Low_complexity 1 27 0 194 0 0 37 chr3 28668224 28668251 -198856327 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1809 166 0 3 chr3 28668253 28668542 -198856036 - AluSx SINE Alu -24 288 1 250 216 0 0 chr3 28670037 28670088 -198854490 + L1M4 LINE L1 3980 4030 -2116 * 3733 192 133 97 chr3 28670086 28670857 -198853721 + L1MC3 LINE L1 6310 7251 -534 313 289 0 21 chr3 28670857 28670954 -198853624 + MLT1F1 LTR MaLR 37 131 -436 3733 192 133 97 chr3 28670954 28671503 -198853075 + L1MC3 LINE L1 7251 7778 -7 1558 149 202 15 chr3 28671530 28671872 -198852706 - MSTA LTR MaLR -21 407 2 2543 229 101 11 chr3 28671877 28672690 -198851888 + L1MC4a LINE L1 6967 7808 0 209 398 16 31 chr3 28675242 28675308 -198849270 + L2 LINE L2 3147 3212 -60 2133 105 0 30 chr3 28675308 28675604 -198848974 - AluSq SINE Alu -26 287 1 209 398 16 31 chr3 28675604 28675665 -198848913 + L2 LINE L2 3212 3272 0 204 40 0 0 chr3 28675748 28675773 -198848805 + (TG)n Simple_repeat Simple_repeat 1 25 0 253 208 0 62 chr3 28675811 28675907 -198848671 + L1MC4 LINE L1 6614 6703 -1339 22 56 0 0 chr3 28675982 28676018 -198848560 + AT_rich Low_complexity Low_complexity 1 36 0 4550 211 46 8 chr3 28676634 28677598 -198846980 + L1PA15-16 LINE L1 734 1685 -5164 5610 277 63 64 chr3 28677722 28678536 -198846042 - L1M1 LINE L1 -4052 2680 1866 1791 152 24 0 chr3 28678536 28678826 -198845752 - AluSx SINE Alu -15 297 1 5610 277 63 64 chr3 28678826 28681049 -198843529 - L1M1 LINE L1 -4866 1866 17 1149 297 34 34 chr3 28681060 28681670 -198842908 - L1M3de LINE L1 -5600 1053 2 28 29 0 0 chr3 28681762 28681797 -198842781 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 28681863 28681887 -198842691 + AT_rich Low_complexity Low_complexity 1 24 0 492 280 91 39 chr3 28682161 28682468 -198842110 - L1ME LINE L1 -446 5675 5353 11446 26 9 0 chr3 28682704 28684102 -198840476 - L1P LINE L1 -732 5399 3989 6684 35 0 5 chr3 28684102 28684904 -198839674 + L1PA3 LINE L1 5356 6155 0 4195 198 33 8 chr3 28684955 28685884 -198838694 + L1MA9 LINE L1 4280 5232 -914 3691 176 42 29 chr3 28685889 28686487 -198838091 + L1MA9 LINE L1 5436 6050 -262 2075 128 0 7 chr3 28686487 28686784 -198837794 + AluSx SINE Alu 1 295 -17 3691 176 42 29 chr3 28686784 28687044 -198837534 + L1MA9 LINE L1 6050 6305 -7 1261 205 49 92 chr3 28687072 28687540 -198837038 - LTR7 LTR ERV1 -1 449 2 2246 85 3 17 chr3 28688889 28689183 -198835395 + AluSp SINE Alu 1 290 -23 1312 264 99 36 chr3 28689232 28689788 -198834790 + MER97a DNA MER1_type? 9 599 -295 530 244 168 5 chr3 28689881 28690090 -198834488 - LTR16A1 LTR ERVL -214 243 1 449 234 37 90 chr3 28690196 28690384 -198834194 + MLT1D LTR MaLR 48 225 -280 985 73 0 15 chr3 28690386 28690523 -198834055 - LTR7 LTR ERV1 -2 448 314 1973 138 33 25 chr3 28690805 28691166 -198833412 - THE1B LTR MaLR 0 364 1 6797 105 1 5 chr3 28691166 28692092 -198832486 - THE1B-int LTR MaLR 0 1580 659 28 48 0 0 chr3 28692500 28692542 -198832036 + AT_rich Low_complexity Low_complexity 1 42 0 885 195 6 0 chr3 28692674 28692833 -198831745 + AluJb SINE Alu 140 299 -13 318 138 86 0 chr3 28693171 28693229 -198831349 - AluSp/q SINE Alu -4 299 237 7498 218 23 10 chr3 28693337 28696065 -198828513 + L1PA15-16 LINE L1 1684 4460 -2389 18028 156 34 16 chr3 28696075 28698429 -198826149 + L1PB1 LINE L1 3 2314 -4553 5969 52 31 23 chr3 28698429 28699203 -198825375 - LTR17 LTR ERV1 0 780 1 18028 156 34 16 chr3 28699203 28701857 -198822721 + L1PB1 LINE L1 2314 4920 -1947 189 0 0 0 chr3 28701857 28701878 -198822700 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 18028 156 34 16 chr3 28701878 28702493 -198822085 + L1PB1 LINE L1 4920 5523 -1344 2480 76 0 0 chr3 28702493 28702794 -198821784 + AluSq SINE Alu 1 301 -12 18028 156 34 16 chr3 28702794 28703636 -198820942 + L1PB1 LINE L1 5523 6591 -276 321 26 0 0 chr3 28703636 28703674 -198820904 + (CA)n Simple_repeat Simple_repeat 1 38 0 18028 156 34 16 chr3 28703674 28703955 -198820623 + L1PB1 LINE L1 6591 6866 -1 2616 209 3 44 chr3 28703933 28704150 -198820428 + L1MA7 LINE L1 4444 4668 -2194 * 2156 110 7 0 chr3 28704150 28704440 -198820138 + AluSg SINE Alu 1 292 -18 2616 209 3 44 chr3 28704440 28704858 -198819720 + L1MA7 LINE L1 4668 5053 -1809 3433 157 33 42 chr3 28704858 28705592 -198818986 + L1MA7 LINE L1 6280 7006 -1 407 312 52 23 chr3 28705696 28705869 -198818709 - MIR3 SINE MIR -8 200 23 22 0 0 0 chr3 28706316 28706338 -198818240 + AT_rich Low_complexity Low_complexity 1 22 0 959 235 73 34 chr3 28706394 28706600 -198817978 - L1ME LINE L1 -468 5696 5471 387 56 0 0 chr3 28706600 28706654 -198817924 + (TG)n Simple_repeat Simple_repeat 2 55 0 959 235 73 34 chr3 28706654 28706775 -198817803 - L1ME LINE L1 -693 5471 5356 691 296 28 6 chr3 28706779 28707005 -198817573 + L1ME1 LINE L1 5945 6334 0 2341 183 46 39 chr3 28707223 28707678 -198816900 - L1MB8 LINE L1 -12 6166 5705 1279 210 52 39 chr3 28707678 28708063 -198816515 - MLT1B LTR MaLR 0 390 1 2341 183 46 39 chr3 28708063 28708193 -198816385 - L1MB8 LINE L1 -473 5705 5577 * 5491 249 63 67 chr3 28708192 28709828 -198814750 + MLT1A1-int LTR MaLR 107 1735 0 1054 237 7 106 chr3 28709829 28710234 -198814344 + MLT1A1 LTR MaLR 1 365 0 231 178 33 33 chr3 28710246 28710336 -198814242 - L1M4 LINE L1 -2912 4045 3956 3079 253 83 7 chr3 28710377 28711184 -198813394 - L1M4 LINE L1 -5558 1301 434 410 360 61 32 chr3 28711902 28712180 -198812398 + L2 LINE L2 2574 2859 -455 441 36 0 0 chr3 28713388 28713402 -198811176 + (TG)n Simple_repeat Simple_repeat 1 69 0 441 36 0 0 chr3 28713402 28713457 -198811121 + (TG)n Simple_repeat Simple_repeat 2 56 0 203 337 22 22 chr3 28713638 28713727 -198810851 + L2 LINE L2 3174 3262 -10 235 204 0 0 chr3 28714212 28714256 -198810322 - L2 LINE L2 0 3272 3229 235 236 69 42 chr3 28715924 28715996 -198808582 - L2 LINE L2 -16 3256 3183 291 294 134 17 chr3 28716198 28716317 -198808261 - MIR SINE MIR -13 249 117 21 0 0 0 chr3 28716407 28716428 -198808150 + AT_rich Low_complexity Low_complexity 1 21 0 864 260 38 60 chr3 28716754 28717200 -198807378 - L1MC4 LINE L1 -484 7558 7123 1628 253 75 17 chr3 28717201 28718198 -198806380 + L1ME2 LINE L1 1882 2921 -3294 668 219 109 99 chr3 28718210 28718493 -198806085 + L1ME2 LINE L1 5566 5851 -384 731 236 34 0 chr3 28718540 28718718 -198805860 + L1ME2 LINE L1 5850 6033 -200 340 322 98 6 chr3 28718976 28719159 -198805419 - L1 LINE L1 -1779 4367 4168 515 332 10 5 chr3 28719461 28719654 -198804924 - MIR SINE MIR -56 206 13 1350 269 152 30 chr3 28719700 28720225 -198804353 - MLT1G1 LTR MaLR -6 589 1 957 215 114 20 chr3 28720279 28720582 -198803996 - MSTD LTR MaLR 0 396 38 236 342 13 13 chr3 28720663 28720677 -198803901 + MER5A DNA MER1_type 110 123 -66 2036 131 41 0 chr3 28720677 28720968 -198803610 - AluSx SINE Alu -9 303 1 236 342 13 13 chr3 28720968 28721032 -198803546 + MER5A DNA MER1_type 122 188 -1 187 373 0 0 chr3 28721034 28721109 -198803469 - MIR3 SINE MIR -49 159 85 25 0 0 0 chr3 28722007 28722032 -198802546 + AT_rich Low_complexity Low_complexity 1 25 0 282 143 0 0 chr3 28724200 28724249 -198800329 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 247 18 0 chr3 28725314 28725484 -198799094 - MER5B DNA MER1_type -1 177 5 4092 199 52 24 chr3 28725609 28726578 -198798000 + L1MC3 LINE L1 6005 7000 -785 1146 204 54 57 chr3 28726601 28726935 -198797643 + L1MC3 LINE L1 7135 7467 -318 * 1401 263 12 14 chr3 28726933 28727279 -198797299 + L1MA7 LINE L1 2 346 -5935 450 321 24 12 chr3 28727326 28727496 -198797082 - L1M3f LINE L1 -4780 570 374 1758 280 35 3 chr3 28727673 28728894 -198795684 + L1MA7 LINE L1 857 2177 -4174 520 257 61 42 chr3 28729020 28729309 -198795269 + L1M4c LINE L1 2041 2344 -4038 * 8170 189 51 33 chr3 28729293 28731219 -198793359 + L1MA7 LINE L1 3504 5494 -1001 2378 118 11 32 chr3 28731219 28731591 -198792987 - THE1B LTR MaLR 0 364 1 8170 189 51 33 chr3 28731591 28732609 -198791969 + L1MA7 LINE L1 5494 6493 -2 877 246 70 0 chr3 28732650 28732951 -198791627 + L1MC3 LINE L1 7452 7773 -12 3097 174 25 0 chr3 28733132 28733662 -198790916 - MER6A DNA MER2_type -1 604 62 46 19 0 0 chr3 28733662 28733715 -198790863 + AT_rich Low_complexity Low_complexity 1 53 0 1779 237 31 34 chr3 28734637 28735272 -198789306 - L1M4c LINE L1 -3453 3395 2771 4224 201 22 16 chr3 28735272 28736327 -198788251 + L1M4c LINE L1 3373 4433 -2415 411 275 18 48 chr3 28737129 28737296 -198787282 - L2 LINE L2 0 3313 3152 250 338 103 31 chr3 28737502 28737792 -198786786 - L2 LINE L2 -728 2586 2276 26 74 0 0 chr3 28738046 28738100 -198786478 + AT_rich Low_complexity Low_complexity 1 54 0 2056 65 0 4 chr3 28738453 28738715 -198785863 + AluY SINE Alu 41 301 -10 2072 92 4 0 chr3 28738817 28739079 -198785499 + AluSp SINE Alu 1 263 -50 23 0 0 0 chr3 28739424 28739447 -198785131 + AT_rich Low_complexity Low_complexity 1 23 0 735 316 77 10 chr3 28739516 28739826 -198784752 + LTR16A LTR ERVL 120 450 0 2186 89 0 24 chr3 28739858 28740149 -198784429 + AluSx SINE Alu 1 284 -28 219 69 0 0 chr3 28741069 28741098 -198783480 + (TG)n Simple_repeat Simple_repeat 1 29 0 235 136 23 0 chr3 28743298 28743342 -198781236 + MER39 LTR ERV1 1 45 -662 * 256 169 0 68 chr3 28743339 28743398 -198781180 + MER34 LTR ERV1 68 122 -420 * 1189 200 67 13 chr3 28743369 28743768 -198780810 + MER39 LTR ERV1 257 707 0 440 279 61 77 chr3 28743796 28744043 -198780535 + MLT1J LTR MaLR 212 454 -57 2421 61 0 0 chr3 28745172 28745469 -198779109 + AluY SINE Alu 1 297 -14 330 26 0 0 chr3 28746513 28746552 -198778026 + (CA)n Simple_repeat Simple_repeat 2 40 0 4882 222 47 11 chr3 28746554 28748065 -198776513 + L1M4c LINE L1 2206 3775 -2607 * 5198 74 8 9 chr3 28748063 28748959 -198775619 + L1PA7 LINE L1 5059 5957 -197 1910 174 90 37 chr3 28748959 28749424 -198775154 + LTR2B LTR ERV1 1 490 0 1412 83 5 0 chr3 28749424 28749616 -198774962 + L1PA7 LINE L1 5954 6146 -8 292 314 19 0 chr3 28749865 28749970 -198774608 + L3b LINE CR1 1320 1426 -157 1470 258 108 29 chr3 28750117 28750812 -198773766 + MER20B DNA MER1_type 4 753 -30 30 0 0 0 chr3 28752058 28752088 -198772490 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 28753278 28753300 -198771278 + AT_rich Low_complexity Low_complexity 1 22 0 268 62 0 0 chr3 28753329 28753361 -198771217 + (A)n Simple_repeat Simple_repeat 1 32 0 21 82 0 0 chr3 28754758 28754807 -198769771 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr3 28754939 28754960 -198769618 + (A)n Simple_repeat Simple_repeat 1 21 0 23 54 0 0 chr3 28755606 28755643 -198768935 + AT_rich Low_complexity Low_complexity 1 37 0 2270 187 46 6 chr3 28755924 28756401 -198768177 + L1MC3 LINE L1 7290 7785 0 232 303 0 15 chr3 28756640 28756706 -198767872 - L2 LINE L2 -5 3308 3244 261 282 99 0 chr3 28756800 28756871 -198767707 + L2 LINE L2 3220 3297 -16 363 249 171 39 chr3 28756914 28757095 -198767483 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 28757101 28757140 -198767438 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 28758129 28758157 -198766421 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 396 208 0 0 chr3 28758466 28758562 -198766016 + (TG)n Simple_repeat Simple_repeat 2 97 0 268 191 111 0 chr3 28759002 28759065 -198765513 + MER115 DNA AcHobo 616 685 -8 2257 97 0 7 chr3 28759726 28760025 -198764553 - AluSg SINE Alu -13 297 1 2172 114 0 7 chr3 28760025 28760331 -198764247 - AluSx SINE Alu -8 304 1 992 220 0 0 chr3 28761655 28761841 -198762737 - MER5A DNA MER1_type -1 188 3 453 230 18 26 chr3 28761953 28762066 -198762512 + MER81 DNA DNA 3 114 0 2306 107 3 0 chr3 28762132 28762441 -198762137 - AluSx SINE Alu -2 310 1 209 200 20 0 chr3 28766010 28766060 -198758518 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 294 325 50 0 chr3 28767398 28767518 -198757060 - MIR SINE MIR -74 188 63 190 333 83 0 chr3 28767897 28767981 -198756597 + L2 LINE L2 2694 2784 -530 3998 212 49 30 chr3 28767981 28770012 -198754566 + L1MB7 LINE L1 4049 6161 -23 22 0 0 0 chr3 28770312 28770334 -198754244 + AT_rich Low_complexity Low_complexity 1 22 0 426 294 0 16 chr3 28770576 28770702 -198753876 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 28770969 28771000 -198753578 + T-rich Low_complexity Low_complexity 2 35 0 3508 102 30 26 chr3 28771291 28771857 -198752721 + LTR24B LTR ERV1 1 568 -8 714 74 0 0 chr3 28771936 28772031 -198752547 - AluY SINE Alu -4 307 213 2245 163 20 45 chr3 28773192 28773635 -198750943 - MSTB1 LTR MaLR 0 432 1 4836 180 9 0 chr3 28774282 28775175 -198749403 - L1 LINE L1 -1735 4411 3511 21 0 0 0 chr3 28775185 28775206 -198749372 + AT_rich Low_complexity Low_complexity 1 21 0 225 139 0 0 chr3 28775252 28775288 -198749290 - L1 LINE L1 -2659 3487 3452 371 175 0 0 chr3 28775288 28775351 -198749227 - Alu SINE Alu 0 302 240 1743 175 30 18 chr3 28775451 28775789 -198748789 + Tigger3(Golem) DNA MER2_type 2687 3028 -1 1485 186 0 4 chr3 28776446 28776699 -198747879 - AluJb SINE Alu -32 280 29 384 191 0 0 chr3 28777349 28777433 -198747145 + (TA)n Simple_repeat Simple_repeat 2 85 0 1955 157 0 3 chr3 28777488 28777793 -198746785 + AluJo SINE Alu 1 304 -8 1540 126 0 0 chr3 28778156 28778362 -198746216 + AluSx SINE Alu 5 210 -102 1246 278 85 17 chr3 28778472 28779116 -198745462 - L1M4 LINE L1 -1029 5117 4430 276 271 103 76 chr3 28779258 28779549 -198745029 + L1M3 LINE L1 3708 4006 -2140 9423 27 0 0 chr3 28779699 28780883 -198743695 - L1P LINE L1 -1362 4784 3601 766 261 37 0 chr3 28781021 28781239 -198743339 - L1ME3A LINE L1 -223 5947 5722 1675 120 35 0 chr3 28781309 28781592 -198742986 - L1MA8 LINE L1 -6 6285 5993 392 48 16 63 chr3 28781657 28781720 -198742858 - MADE1 DNA Mariner 0 80 21 356 333 30 0 chr3 28781727 28781961 -198742617 - L1ME3A LINE L1 -629 5541 5301 1439 170 0 0 chr3 28781982 28782206 -198742372 - AluJb SINE Alu -16 296 73 1029 230 0 5 chr3 28782306 28782515 -198742063 + L1M3 LINE L1 4773 4980 -1166 204 182 81 20 chr3 28782516 28782664 -198741914 + (TA)n Simple_repeat Simple_repeat 2 158 0 193 144 65 14 chr3 28782698 28782837 -198741741 + (TA)n Simple_repeat Simple_repeat 2 147 0 1154 203 55 93 chr3 28782837 28783206 -198741372 + L1M3 LINE L1 4969 5321 -859 1780 139 23 27 chr3 28783206 28783507 -198741071 + AluSx SINE Alu 4 303 -9 1154 203 55 93 chr3 28783507 28783711 -198740867 + L1M3 LINE L1 5321 5531 -649 3532 113 21 2 chr3 28783843 28784367 -198740211 - L1PA15 LINE L1 -5 6160 5627 21 0 0 0 chr3 28784494 28784515 -198740063 + AT_rich Low_complexity Low_complexity 1 21 0 2572 61 0 3 chr3 28784733 28785043 -198739535 - AluY SINE Alu -2 309 1 1871 125 56 11 chr3 28785484 28785771 -198738807 - AluJb SINE Alu -12 300 1 216 266 0 47 chr3 28785927 28785991 -198738587 - L2 LINE L2 -2 3311 3251 5684 18 0 0 chr3 28786757 28787416 -198737162 - L1P LINE L1 -1442 4704 4046 604 264 19 93 chr3 28787413 28787735 -198736843 - L1MDb LINE L1 -5338 1071 774 * 1305 332 56 38 chr3 28788495 28789208 -198735370 + L2 LINE L2 2032 2757 -557 672 129 0 0 chr3 28789218 28789319 -198735259 - AluSg/x SINE Alu -30 282 182 705 146 8 0 chr3 28789424 28789547 -198735031 - L1P LINE L1 -940 5206 5083 4240 197 30 15 chr3 28789671 28791142 -198733436 - L1MB2 LINE L1 -3 6404 4910 1751 192 10 27 chr3 28791254 28791655 -198732923 - L1MB2 LINE L1 -5363 1021 628 11128 38 0 2 chr3 28791655 28793787 -198730791 - L1PA5 LINE L1 0 6154 4027 910 73 0 0 chr3 28793787 28793910 -198730668 + L1PA5 LINE L1 3898 4020 -2126 28 0 0 0 chr3 28795893 28795921 -198728657 + AT_rich Low_complexity Low_complexity 1 28 0 2051 227 13 15 chr3 28795949 28796408 -198728170 + MLT1F LTR MaLR 85 542 0 327 340 0 0 chr3 28796676 28796776 -198727802 - Charlie8 DNA MER1_type -2160 257 158 2419 98 0 0 chr3 28796896 28797201 -198727377 - AluSc SINE Alu -2 307 3 299 275 46 30 chr3 28797361 28797492 -198727086 + L2 LINE L2 2926 3058 -214 591 318 58 25 chr3 28797665 28797907 -198726671 + LTR16A LTR ERVL 18 267 -183 334 150 75 0 chr3 28797943 28798023 -198726555 + LTR16A LTR ERVL 339 424 -26 411 350 93 53 chr3 28798895 28799326 -198725252 - L2 LINE L2 0 3272 2825 189 0 0 0 chr3 28800244 28800265 -198724313 + (GA)n Simple_repeat Simple_repeat 1 21 0 261 57 0 0 chr3 28800749 28800784 -198723794 + (GA)n Simple_repeat Simple_repeat 2 36 0 211 351 135 27 chr3 28802468 28802653 -198721925 + L2 LINE L2 3068 3272 0 2858 180 31 54 chr3 28803383 28803999 -198720579 + L1M4c LINE L1 20 621 -5763 198 0 0 0 chr3 28804002 28804024 -198720554 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 402 310 32 26 chr3 28804652 28804807 -198719771 - L2 LINE L2 0 3313 3158 426 256 60 17 chr3 28804899 28805016 -198719562 + L2 LINE L2 3191 3312 -1 1998 124 0 40 chr3 28805142 28805464 -198719114 + AluSx SINE Alu 1 309 -3 1887 302 67 30 chr3 28805899 28806726 -198717852 + L2 LINE L2 2093 2949 -365 248 197 0 145 chr3 28806739 28806815 -198717763 + L2 LINE L2 3249 3313 0 360 369 108 21 chr3 28807147 28807434 -198717144 - L2 LINE L2 -440 2874 2563 740 291 51 33 chr3 28807715 28808048 -198716530 - L2 LINE L2 0 3313 2975 1769 164 57 11 chr3 28808415 28808768 -198715810 + L1MA7 LINE L1 5662 6030 -261 234 0 0 0 chr3 28808792 28808818 -198715760 + (CAA)n Simple_repeat Simple_repeat 3 28 0 251 301 27 0 chr3 28809330 28809403 -198715175 + MIR SINE MIR 67 141 -121 21 0 0 0 chr3 28809798 28809819 -198714759 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 28811330 28811350 -198713228 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 339 205 12 36 chr3 28814182 28814265 -198710313 - MIR SINE MIR -28 234 154 315 298 107 49 chr3 28814266 28814471 -198710107 - MIR SINE MIR -41 221 5 275 292 21 21 chr3 28814693 28814789 -198709789 + GA-rich Low_complexity Low_complexity 1 96 0 21 57 0 0 chr3 28814900 28814935 -198709643 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr3 28814943 28814985 -198709593 + AT_rich Low_complexity Low_complexity 1 42 0 1524 201 128 38 chr3 28815144 28815596 -198708982 - MLT1D LTR MaLR 0 505 13 27 49 0 0 chr3 28815815 28815856 -198708722 + AT_rich Low_complexity Low_complexity 1 41 0 906 312 127 41 chr3 28815859 28816516 -198708062 + HAL1b LINE L1 47 775 -573 1997 156 57 23 chr3 28816516 28816868 -198707710 + THE1B LTR MaLR 1 364 0 906 312 127 41 chr3 28816868 28816944 -198707634 + HAL1b LINE L1 775 843 -505 207 69 0 0 chr3 28817339 28817368 -198707210 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 222 336 112 0 chr3 28817475 28817582 -198706996 + MIR SINE MIR 25 143 -65 21 0 0 0 chr3 28817761 28817782 -198706796 + AT_rich Low_complexity Low_complexity 1 21 0 1913 167 11 30 chr3 28817848 28818219 -198706359 - THE1B LTR MaLR 0 364 1 180 252 75 75 chr3 28818382 28818489 -198706089 - L2 LINE L2 0 3272 3166 272 321 12 0 chr3 28818781 28818865 -198705713 + GA-rich Low_complexity Low_complexity 3 87 0 19293 63 1 0 chr3 28819711 28822152 -198702426 + L1PA4 LINE L1 1 2443 -3703 8581 40 0 1 chr3 28822152 28823976 -198700602 + L1PA4 LINE L1 4321 6148 -7 21 36 0 0 chr3 28823982 28824010 -198700568 + AT_rich Low_complexity Low_complexity 1 28 0 1001 194 75 9 chr3 28825364 28825767 -198698811 - L1MC/D LINE L1 -758 5806 5484 690 260 16 0 chr3 28825759 28825951 -198698627 - L1MC/D LINE L1 -1287 5277 5083 * 1907 181 42 3 chr3 28825951 28826283 -198698295 + Tigger7 DNA MER2_type 4 348 -2139 675 240 7 7 chr3 28826275 28826421 -198698157 + Tigger7 DNA MER2_type 2343 2488 -3 * 1894 255 25 18 chr3 28826422 28827050 -198697528 - L1MC/D LINE L1 -1498 5066 4434 * 2328 227 90 48 chr3 28827044 28827912 -198696666 - L1MCa LINE L1 -5189 892 10 22 56 0 0 chr3 28828263 28828299 -198696279 + AT_rich Low_complexity Low_complexity 1 36 0 403 328 78 21 chr3 28829533 28829802 -198694776 + MLT1K LTR MaLR 38 337 -251 2662 248 49 8 chr3 28830492 28831450 -198693128 - L1M4 LINE L1 -2329 3817 2821 1969 164 42 33 chr3 28831715 28832262 -198692316 - MLT2A2 LTR ERVL 0 554 1 1768 211 38 34 chr3 28832262 28832764 -198691814 + L1ME1 LINE L1 5579 6082 -84 2474 101 93 5 chr3 28832764 28833171 -198691407 - LTR7 LTR ERV1 -7 443 1 7728 91 28 5 chr3 28833171 28834330 -198690248 - HERVH LTR ERV1 0 7713 6529 3893 75 11 49 chr3 28834303 28834939 -198689639 - HERVH LTR ERV1 -1333 6380 5769 * 1223 95 6 0 chr3 28834935 28835114 -198689464 - HERVH LTR ERV1 -3046 4667 4488 * 3214 111 2 6 chr3 28835116 28835620 -198688958 - HERVH LTR ERV1 -3720 3993 3492 898 109 27 0 chr3 28835610 28835757 -198688821 - HERVH LTR ERV1 -4423 3290 3140 * 10252 103 5 12 chr3 28835736 28837335 -198687243 - HERVH LTR ERV1 -4718 2995 1409 551 88 0 0 chr3 28837322 28837402 -198687176 - HERVH LTR ERV1 -7633 80 1 * 2521 103 100 5 chr3 28837404 28837813 -198686765 - LTR7 LTR ERV1 -2 448 1 335 223 29 0 chr3 28837816 28837919 -198686659 + L1MA10 LINE L1 6228 6333 -1 25 51 0 0 chr3 28837995 28838034 -198686544 + AT_rich Low_complexity Low_complexity 1 39 0 575 274 67 79 chr3 28838034 28838527 -198686051 - L1MC4a LINE L1 -1893 5915 5429 520 146 10 0 chr3 28838776 28838872 -198685706 + MLT1B LTR MaLR 56 152 -238 * 542 176 0 9 chr3 28838864 28838972 -198685606 + MLT1B LTR MaLR 67 173 -217 933 156 0 0 chr3 28838975 28839116 -198685462 + FRAM SINE Alu 31 171 -5 896 171 39 49 chr3 28839153 28839186 -198685392 + MLT1B LTR MaLR 188 220 -170 4005 136 60 35 chr3 28839186 28839946 -198684632 - MER4E LTR ERV1 0 779 1 896 171 39 49 chr3 28839946 28840117 -198684461 + MLT1B LTR MaLR 220 390 0 600 262 99 0 chr3 28840360 28840532 -198684046 + MER5A DNA MER1_type 1 189 0 416 305 99 33 chr3 28840673 28840886 -198683692 + MIR SINE MIR 13 239 -23 7674 104 122 87 chr3 28840983 28842624 -198681954 - pTR5 LTR ERV1 0 2438 741 12742 149 58 1 chr3 28842768 28845056 -198679522 + Tigger1 DNA MER2_type 1 2418 0 489 306 25 15 chr3 28845158 28845354 -198679224 + MLT1J2 LTR MaLR 2 199 -251 31 0 0 0 chr3 28845578 28845609 -198678969 + AT_rich Low_complexity Low_complexity 1 31 0 2133 135 3 3 chr3 28846173 28846485 -198678093 + AluSq SINE Alu 2 313 0 23 0 0 0 chr3 28846577 28846600 -198677978 + AT_rich Low_complexity Low_complexity 1 23 0 354 350 107 20 chr3 28847310 28847507 -198677071 - MIR SINE MIR -24 238 25 210 317 148 21 chr3 28847508 28847650 -198676928 - L3 LINE CR1 -19 1558 1399 715 296 79 12 chr3 28847714 28847954 -198676624 + MIR SINE MIR 2 257 -5 576 277 109 16 chr3 28847991 28848175 -198676403 - MIR SINE MIR -45 217 17 1857 123 3 68 chr3 28849495 28849825 -198674753 - AluSx SINE Alu 0 312 1 188 350 29 102 chr3 28849828 28850074 -198674504 + L2 LINE L2 2999 3226 -46 392 299 35 65 chr3 28850708 28850909 -198673669 - MIR SINE MIR 0 262 68 324 0 0 0 chr3 28851461 28851497 -198673081 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 157 0 36 chr3 28851511 28851594 -198672984 + (TA)n Simple_repeat Simple_repeat 2 81 0 430 281 92 30 chr3 28851876 28852040 -198672538 - MER5A DNA MER1_type -15 174 1 24 32 0 0 chr3 28852057 28852088 -198672490 + AT_rich Low_complexity Low_complexity 1 31 0 207 162 0 0 chr3 28852714 28852751 -198671827 + (CAT)n Simple_repeat Simple_repeat 3 39 0 11835 207 33 39 chr3 28853096 28857004 -198667574 + L1MA4A LINE L1 7 3938 -2995 2023 116 22 0 chr3 28857004 28857311 -198667267 + AluSx SINE Alu 1 313 0 11835 207 33 39 chr3 28857311 28857669 -198666909 + L1MA4A LINE L1 3938 4297 -2636 1716 188 24 13 chr3 28857669 28857967 -198666611 + AluJb SINE Alu 1 301 -11 11835 207 33 39 chr3 28857967 28858723 -198665855 + L1MA4A LINE L1 4297 5056 -1877 339 25 0 0 chr3 28858723 28858763 -198665815 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2152 101 0 18 chr3 28858770 28859056 -198665522 - AluSc SINE Alu -28 281 1 11835 207 33 39 chr3 28859056 28860067 -198664511 + L1MA4A LINE L1 5062 6023 -910 2144 134 0 0 chr3 28860067 28860365 -198664213 + AluSx SINE Alu 1 298 -14 11835 207 33 39 chr3 28860365 28860532 -198664046 + L1MA4A LINE L1 6023 6190 -743 189 0 0 0 chr3 28861541 28861562 -198663016 + (A)n Simple_repeat Simple_repeat 1 21 0 4090 167 22 10 chr3 28861562 28862372 -198662206 + L1MA4A LINE L1 6178 6997 -8 287 270 71 32 chr3 28863014 28863140 -198661438 + LTR16A1 LTR ERVL 327 457 0 1791 185 31 62 chr3 28863378 28863860 -198660718 + MLT1C LTR MaLR 1 467 0 189 0 0 0 chr3 28865484 28865505 -198659073 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 28867617 28867639 -198656939 + AT_rich Low_complexity Low_complexity 1 22 0 327 25 0 0 chr3 28869044 28869084 -198655494 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 2913 9 0 0 chr3 28870870 28871187 -198653391 - AluYb8 SINE Alu -1 317 1 230 307 52 52 chr3 28872110 28872263 -198652315 - MIR SINE MIR -101 161 9 21 0 0 0 chr3 28872442 28872463 -198652115 + AT_rich Low_complexity Low_complexity 1 21 0 652 119 17 8 chr3 28873984 28874102 -198650476 + CT-rich Low_complexity Low_complexity 3 121 0 24 53 0 0 chr3 28874644 28874682 -198649896 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 28874914 28874949 -198649629 + AT_rich Low_complexity Low_complexity 1 35 0 180 125 0 0 chr3 28876208 28876240 -198648338 + (CTG)n Simple_repeat Simple_repeat 2 33 0 606 111 30 0 chr3 28877216 28877315 -198647263 - L1PA13 LINE L1 -4 6159 6058 4035 144 9 0 chr3 28877323 28878015 -198646563 + L1P LINE L1 3613 4310 -1836 382 73 15 15 chr3 28879108 28879176 -198645402 + (TA)n Simple_repeat Simple_repeat 2 69 0 2183 116 0 3 chr3 28879176 28879470 -198645108 - AluSg1 SINE Alu -16 293 1 189 195 0 0 chr3 28880212 28880253 -198644325 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 219 186 0 0 chr3 28880549 28880592 -198643986 + GA-rich Low_complexity Low_complexity 4 46 0 192 179 0 0 chr3 28882719 28882758 -198641820 + (CA)n Simple_repeat Simple_repeat 2 40 0 556 260 117 0 chr3 28883091 28883245 -198641333 - MIR SINE MIR -16 246 75 22 0 0 0 chr3 28884049 28884071 -198640507 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 28884103 28884124 -198640454 + AT_rich Low_complexity Low_complexity 1 21 0 695 277 27 27 chr3 28884212 28884504 -198640074 - L1ME4a LINE L1 -268 5853 5562 661 246 86 37 chr3 28886275 28886462 -198638116 + MER3 DNA MER1_type 14 209 0 209 348 72 0 chr3 28886766 28886835 -198637743 + L2 LINE L2 3149 3222 -50 202 284 263 0 chr3 28886927 28887022 -198637556 + MIR SINE MIR 17 136 -126 301 333 0 10 chr3 28887926 28888028 -198636550 - MIR SINE MIR -83 125 25 1136 261 51 20 chr3 28888444 28889058 -198635520 + MER97a DNA MER1_type? 1 674 -220 587 269 53 0 chr3 28889043 28889214 -198635364 + LTR16C LTR ERVL 312 491 0 * 199 282 90 13 chr3 28889924 28890002 -198634576 + MER5B DNA MER1_type 88 171 -7 1731 150 10 29 chr3 28890113 28890419 -198634159 - AluJo SINE Alu -8 304 5 222 37 0 0 chr3 28890999 28891026 -198633552 + (TG)n Simple_repeat Simple_repeat 2 28 0 270 277 169 38 chr3 28891165 28891349 -198633229 + MIR SINE MIR 34 241 -21 21 82 0 0 chr3 28893973 28894022 -198630556 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr3 28894154 28894177 -198630401 + (A)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr3 28894823 28894860 -198629718 + AT_rich Low_complexity Low_complexity 1 37 0 2299 185 48 6 chr3 28895141 28895617 -198628961 + L1MC3 LINE L1 7290 7785 0 232 303 0 15 chr3 28895856 28895922 -198628656 - L2 LINE L2 -5 3308 3244 261 282 99 0 chr3 28896016 28896087 -198628491 + L2 LINE L2 3220 3297 -16 376 243 171 39 chr3 28896130 28896311 -198628267 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 28896317 28896356 -198628222 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 28897345 28897373 -198627205 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 330 222 0 0 chr3 28897684 28897774 -198626804 + (TG)n Simple_repeat Simple_repeat 2 91 0 262 191 111 0 chr3 28898214 28898277 -198626301 + MER115 DNA AcHobo 616 685 -8 2257 97 0 7 chr3 28898938 28899237 -198625341 - AluSg SINE Alu -13 297 1 2209 111 0 7 chr3 28899237 28899544 -198625034 - AluSx SINE Alu -7 305 1 1020 215 0 0 chr3 28900868 28901054 -198623524 - MER5A DNA MER1_type -1 188 3 433 239 18 26 chr3 28901166 28901279 -198623299 + MER81 DNA DNA 3 114 0 2258 108 3 0 chr3 28901345 28901650 -198622928 - AluSx SINE Alu -6 306 1 209 200 20 0 chr3 28905217 28905267 -198619311 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 294 325 50 0 chr3 28906605 28906725 -198617853 - MIR SINE MIR -74 188 63 190 333 83 0 chr3 28907104 28907188 -198617390 + L2 LINE L2 2694 2784 -530 3998 212 47 30 chr3 28907188 28909227 -198615351 + L1MB7 LINE L1 4049 6167 -17 1112 271 30 107 chr3 28909233 28909413 -198615165 + L2 LINE L2 2773 2965 -348 11727 33 5 0 chr3 28909413 28911603 -198612975 + L1PA5 LINE L1 3956 6151 -3 1112 271 30 107 chr3 28911603 28912006 -198612572 + L2 LINE L2 2965 3313 0 330 26 0 0 chr3 28912193 28912232 -198612346 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2017 128 0 0 chr3 28912237 28912511 -198612067 - AluSg SINE Alu -36 274 1 1645 167 3 33 chr3 28913048 28913348 -198611230 + AluJb SINE Alu 1 291 -21 1865 174 48 34 chr3 28913401 28913839 -198610739 + L1MB7 LINE L1 5741 6184 0 25 0 0 0 chr3 28914364 28914389 -198610189 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 28915373 28915395 -198609183 + AT_rich Low_complexity Low_complexity 1 22 0 205 338 39 42 chr3 28915773 28915964 -198608614 - MIR SINE MIR -31 231 43 1944 129 7 0 chr3 28916127 28916434 -198608144 + AluSg SINE Alu 1 309 0 2096 115 0 3 chr3 28917557 28917870 -198606708 + AluSq SINE Alu 1 312 0 30 27 0 0 chr3 28919231 28919268 -198605310 + AT_rich Low_complexity Low_complexity 1 37 0 247 209 0 0 chr3 28920870 28920913 -198603665 + 5S rRNA rRNA 1 43 -78 341 372 128 38 chr3 28920923 28921213 -198603365 + L2 LINE L2 2592 2907 -407 323 333 66 16 chr3 28921676 28921859 -198602719 - MIR3 SINE MIR -15 193 2 2351 223 46 32 chr3 28922729 28922976 -198601602 + L1ME2 LINE L1 5431 5673 -491 2245 106 3 0 chr3 28922976 28923278 -198601300 + AluSg SINE Alu 1 303 -7 2351 223 46 32 chr3 28923278 28923497 -198601081 + L1ME2 LINE L1 5673 5887 -277 2097 98 3 20 chr3 28923497 28923793 -198600785 + AluSc SINE Alu 1 291 -18 2351 223 46 32 chr3 28923793 28924039 -198600539 + L1ME2 LINE L1 5887 6154 -10 194 298 35 0 chr3 28925025 28925082 -198599496 + L2 LINE L2 3213 3271 -1 300 322 158 23 chr3 28925879 28926050 -198598528 - MIR3 SINE MIR -5 203 10 405 102 0 0 chr3 28926090 28926149 -198598429 + (TC)n Simple_repeat Simple_repeat 2 60 0 369 0 0 0 chr3 28926149 28926190 -198598388 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 28926899 28926920 -198597658 + AT_rich Low_complexity Low_complexity 1 21 0 791 240 99 99 chr3 28927447 28927809 -198596769 + MER57B LTR ERV1 67 428 -6 407 346 156 4 chr3 28927819 28928076 -198596502 + L2 LINE L2 2530 2825 -489 211 178 14 41 chr3 28928821 28928894 -198595684 + (TA)n Simple_repeat Simple_repeat 1 71 0 211 297 51 76 chr3 28929164 28929282 -198595296 + L2 LINE L2 3152 3266 -6 509 138 0 0 chr3 28930033 28930113 -198594465 - MADE1 DNA Mariner 0 80 1 1091 177 51 75 chr3 28931990 28932089 -198592489 + AluJo SINE Alu 40 140 -172 265 24 48 0 chr3 28932089 28932131 -198592447 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1091 177 51 75 chr3 28932131 28932285 -198592293 + AluJo SINE Alu 140 287 -25 215 393 17 0 chr3 28932961 28933078 -198591500 + L2 LINE L2 3195 3313 0 325 256 241 0 chr3 28933311 28933444 -198591134 + MLT1I LTR MaLR 218 382 -27 2280 116 0 0 chr3 28934954 28935256 -198589322 - AluSx SINE Alu -10 302 1 200 365 0 52 chr3 28936271 28936386 -198588192 - L3 LINE CR1 -75 1502 1394 672 221 13 6 chr3 28936388 28936546 -198588032 - FRAM SINE Alu -17 159 1 213 316 51 13 chr3 28936550 28936629 -198587949 - L3 LINE CR1 -177 1400 1319 * 246 320 10 41 chr3 28936613 28936710 -198587868 + L2 LINE L2 3220 3313 0 516 350 89 20 chr3 28936710 28937101 -198587477 - L3 LINE CR1 -253 1324 907 1035 241 9 5 chr3 28937101 28937313 -198587265 + MER58A DNA MER1_type 1 213 -11 2813 240 125 31 chr3 28937682 28938809 -198585769 - L1MD2 LINE L1 -16 6343 5098 1687 225 199 42 chr3 28938818 28939432 -198585146 - LTR41 LTR ERVL -6 767 58 807 279 13 96 chr3 28939600 28939998 -198584580 - L1MDa LINE L1 -6162 378 14 191 256 23 0 chr3 28940567 28940610 -198583968 - L2 LINE L2 -18 3254 3211 314 365 7 0 chr3 28941508 28941645 -198582933 - L3 LINE CR1 -3 1574 1437 225 313 87 35 chr3 28941744 28941859 -198582719 - L2 LINE L2 -41 3272 3152 314 307 89 34 chr3 28941894 28942073 -198582505 - L3 LINE CR1 -193 1384 1196 447 306 69 46 chr3 28942559 28942775 -198581803 + MIR SINE MIR 31 251 -11 273 75 0 0 chr3 28943184 28943224 -198581354 + (CA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr3 28945002 28945029 -198579549 + AT_rich Low_complexity Low_complexity 1 27 0 889 180 0 0 chr3 28945045 28945184 -198579394 - AluJo SINE Alu -38 274 136 596 255 176 30 chr3 28945259 28945526 -198579052 + MLT1G1 LTR MaLR 42 347 -248 651 247 68 0 chr3 28946458 28946604 -198577974 + MER58A DNA MER1_type 2 157 0 207 69 0 0 chr3 28946788 28946817 -198577761 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 62 21 62 chr3 28947243 28947291 -198577287 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1747 156 33 4 chr3 28947354 28947670 -198576908 + AluSx SINE Alu 1 324 0 750 168 15 0 chr3 28948485 28948616 -198575962 - AluJo SINE Alu -169 133 1 227 333 130 0 chr3 28949404 28949527 -198575051 + MIR SINE MIR 35 173 -89 3781 223 8 1 chr3 28950217 28951096 -198573482 + L1PA15 LINE L1 2798 3682 -2464 256 125 31 0 chr3 28951101 28951165 -198573413 + (TA)n Simple_repeat Simple_repeat 2 67 0 447 118 0 50 chr3 28951199 28951318 -198573260 + (TA)n Simple_repeat Simple_repeat 1 113 0 342 214 0 61 chr3 28951319 28951417 -198573161 + L1MC4 LINE L1 6614 6705 -1337 203 86 0 29 chr3 28951418 28951453 -198573125 + (TA)n Simple_repeat Simple_repeat 2 35 0 7479 199 20 18 chr3 28951462 28952416 -198572162 + L1PA15 LINE L1 3697 4647 -1518 2017 146 0 13 chr3 28952416 28952725 -198571853 + AluSx SINE Alu 1 305 -7 7479 199 20 18 chr3 28952725 28953549 -198571029 + L1PA15 LINE L1 4647 5481 -684 2125 76 0 18 chr3 28953549 28953824 -198570754 + AluSc SINE Alu 35 304 -5 7479 199 20 18 chr3 28953824 28954511 -198570067 + L1PA15 LINE L1 5481 6165 0 3882 131 44 3 chr3 28955611 28956230 -198568348 + LTR9B LTR ERV1 1 644 0 22 0 0 0 chr3 28956717 28956739 -198567839 + AT_rich Low_complexity Low_complexity 1 22 0 429 204 11 10 chr3 28956863 28956960 -198567618 + MER34 LTR ERV1 1 92 -450 465 220 96 39 chr3 28956963 28957250 -198567328 + LTR48 LTR ERV1 166 491 -153 211 269 0 0 chr3 28959143 28959195 -198565383 + MIR3 SINE MIR 146 197 -11 208 245 102 48 chr3 28960048 28960195 -198564383 - L2 LINE L2 -962 2352 2198 3840 183 20 19 chr3 28960195 28960929 -198563649 + MER49 LTR ERV1 177 911 -12 918 242 175 14 chr3 28960989 28961286 -198563292 + MLT1I LTR MaLR 63 407 -2 22 0 0 0 chr3 28961593 28961615 -198562963 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 28961918 28961946 -198562632 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 28962198 28962220 -198562358 + AT_rich Low_complexity Low_complexity 1 22 0 436 294 0 16 chr3 28962463 28962589 -198561989 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 28962856 28962887 -198561691 + T-rich Low_complexity Low_complexity 2 35 0 3500 102 30 26 chr3 28963178 28963744 -198560834 + LTR24B LTR ERV1 1 568 -8 721 74 0 0 chr3 28963823 28963918 -198560660 - AluY SINE Alu -4 307 213 2477 77 0 0 chr3 28966722 28967021 -198557557 + AluSc SINE Alu 3 301 -8 191 32 65 0 chr3 28968064 28968095 -198556483 + A-rich Low_complexity Low_complexity 2 34 0 27 0 0 0 chr3 28968323 28968350 -198556228 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 28968378 28968406 -198556172 + AT_rich Low_complexity Low_complexity 1 28 0 1802 186 12 66 chr3 28969275 28969699 -198554879 + MER57A LTR ERV1 3 403 0 27 49 0 0 chr3 28970322 28970363 -198554215 + AT_rich Low_complexity Low_complexity 1 41 0 274 132 0 0 chr3 28970374 28970412 -198554166 + MER34C LTR ERV1 1 38 -547 2416 163 72 118 chr3 28970415 28971163 -198553415 + LTR8A LTR ERV1 1 714 -13 * 2624 156 72 40 chr3 28971158 28971702 -198552876 + MER34C LTR ERV1 22 582 -3 27 49 0 0 chr3 28971813 28971854 -198552724 + AT_rich Low_complexity Low_complexity 1 41 0 748 249 21 47 chr3 28972728 28972921 -198551657 + MER5A DNA MER1_type 1 188 -1 180 333 0 0 chr3 28974978 28975023 -198549555 + L2 LINE L2 2923 2967 -305 301 278 0 82 chr3 28976196 28976293 -198548285 - L2 LINE L2 -1 3271 3183 1361 185 63 35 chr3 28976324 28976611 -198547967 + AluJo SINE Alu 1 295 -17 2087 130 0 7 chr3 28977198 28977490 -198547088 - AluSg SINE Alu -19 291 2 217 348 90 28 chr3 28978005 28978183 -198546395 - MIR SINE MIR -58 204 16 543 330 82 54 chr3 28978506 28979151 -198545427 - L2 LINE L2 -456 2858 2196 21 57 0 0 chr3 28979936 28979971 -198544607 + AT_rich Low_complexity Low_complexity 1 35 0 2403 73 13 0 chr3 28980259 28980560 -198544018 + AluSp SINE Alu 1 305 -8 182 210 123 49 chr3 28980626 28980707 -198543871 + MER5C DNA MER1_type 36 122 -202 456 304 44 20 chr3 28981364 28981568 -198543010 - L2 LINE L2 -1227 2087 1879 237 132 0 0 chr3 28982017 28982055 -198542523 + L2 LINE L2 3270 3307 -6 583 206 16 8 chr3 28982836 28982962 -198541616 - MIR SINE MIR -110 152 26 359 306 60 99 chr3 28983178 28983613 -198540965 + MLT1J1 LTR MaLR 29 446 0 368 286 31 20 chr3 28984631 28984729 -198539849 + MIR SINE MIR 43 141 -121 2370 169 24 9 chr3 28984743 28985163 -198539415 + MSTB LTR MaLR 1 426 0 4442 185 32 3 chr3 28986036 28986918 -198537660 + L1MC1 LINE L1 5417 6323 -10 204 40 0 0 chr3 28986920 28986945 -198537633 + (GA)n Simple_repeat Simple_repeat 1 25 0 520 220 76 0 chr3 28987056 28987188 -198537390 + MLT1L LTR MaLR 423 564 -51 205 296 93 0 chr3 28987628 28987682 -198536896 - L2 LINE L2 -5 3308 3250 198 0 0 0 chr3 28988200 28988222 -198536356 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 333 305 102 50 chr3 28988863 28989064 -198535514 - MIR SINE MIR -17 245 35 1111 282 86 15 chr3 28991419 28991816 -198532762 - L2 LINE L2 0 3313 2889 878 197 113 84 chr3 28991816 28991978 -198532600 - MER96B DNA MER1_type? 0 417 261 2215 94 0 38 chr3 28991978 28992298 -198532280 - AluSx SINE Alu -4 308 1 878 197 113 84 chr3 28992298 28992516 -198532062 - MER96B DNA MER1_type? -156 261 26 1789 264 104 16 chr3 28992531 28993148 -198531430 - L2 LINE L2 -418 2896 2226 35 41 0 0 chr3 28994527 28994576 -198530002 + AT_rich Low_complexity Low_complexity 1 49 0 556 232 8 8 chr3 28996122 28996247 -198528331 + L1MC1 LINE L1 6204 6328 -5 1295 212 10 26 chr3 28997184 28997490 -198527088 - AluJo SINE Alu 0 312 12 1218 178 98 46 chr3 28997490 28997816 -198526762 + MER61A LTR ERV1 1 343 0 2067 148 12 96 chr3 28997816 28997884 -198526694 + MER61A-int LTR ERV1 1 73 -5144 1943 97 14 17 chr3 28997884 28998173 -198526405 + AluSx SINE Alu 1 288 -24 2067 148 12 96 chr3 28998173 28998801 -198525777 + MER61A-int LTR ERV1 73 777 -4440 335 70 0 0 chr3 28998794 28998837 -198525741 + MER61A-int LTR ERV1 1320 1362 -3855 * 20577 105 40 15 chr3 28998853 29002459 -198522119 + MER61A-int LTR ERV1 1655 5201 -16 188 35 35 0 chr3 29002459 29002488 -198522090 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2025 96 22 0 chr3 29002494 29002764 -198521814 - AluSx SINE Alu -36 276 1 1430 148 126 19 chr3 29002789 29003099 -198521479 + MER61A LTR ERV1 1 343 0 200 336 47 28 chr3 29003676 29003783 -198520795 + MIR SINE MIR 35 143 -65 267 81 0 0 chr3 29004865 29004902 -198519676 - tRNA-Glu-GAG tRNA tRNA -38 37 1 2089 123 0 0 chr3 29005349 29005634 -198518944 - AluSg SINE Alu -25 285 1 1536 182 20 135 chr3 29007602 29008096 -198516482 + MLT1D LTR MaLR 1 437 -68 11531 158 17 4 chr3 29008096 29010069 -198514509 - Tigger1 DNA MER2_type -1 2417 420 29969 109 27 65 chr3 29010070 29016454 -198508124 - L1PA7 LINE L1 0 6154 12 1734 161 34 0 chr3 29016463 29016755 -198507823 - Tigger1 DNA MER2_type -1988 430 129 429 136 0 0 chr3 29016771 29016837 -198507741 + MLT1D LTR MaLR 440 505 0 30 27 0 0 chr3 29017122 29017159 -198507419 + AT_rich Low_complexity Low_complexity 1 37 0 408 337 76 12 chr3 29017224 29017396 -198507182 + L3 LINE CR1 1382 1564 -13 23 33 0 0 chr3 29017579 29017609 -198506969 + AT_rich Low_complexity Low_complexity 1 30 0 2053 187 0 6 chr3 29017879 29018242 -198506336 + MLT1A1 LTR MaLR 1 361 -4 32 0 0 0 chr3 29019171 29019203 -198505375 + AT_rich Low_complexity Low_complexity 1 32 0 758 188 0 0 chr3 29020268 29020396 -198504182 - FRAM SINE Alu -48 128 1 215 253 103 35 chr3 29020444 29020531 -198504047 + MIR SINE MIR 167 259 -3 184 294 0 59 chr3 29020964 29021032 -198503546 - MIR SINE MIR 0 262 199 1899 122 31 17 chr3 29021196 29021484 -198503094 + AluSx SINE Alu 1 292 -20 1362 235 47 41 chr3 29021542 29021989 -198502589 - L1ME1 LINE L1 -4 6162 5713 23 54 0 0 chr3 29023235 29023272 -198501306 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 29023640 29023661 -198500917 + AT_rich Low_complexity Low_complexity 1 21 0 5823 27 0 1 chr3 29023844 29024548 -198500030 - L1P LINE L1 -3425 2721 2019 3129 35 3 0 chr3 29024548 29024919 -198499659 + L1PA3 LINE L1 5779 6150 -5 189 240 107 40 chr3 29025555 29025630 -198498948 - MIR SINE MIR -109 99 20 1269 264 124 7 chr3 29025859 29026405 -198498173 - L1ME3 LINE L1 0 6162 5553 1318 275 78 70 chr3 29026409 29027092 -198497486 - MER21B LTR ERV1 -149 714 27 412 202 12 0 chr3 29027287 29027371 -198497207 + MER39 LTR ERV1 1 85 -622 * 1139 165 87 13 chr3 29027367 29027597 -198496981 + MER39 LTR ERV1 461 707 0 633 336 11 19 chr3 29027696 29027958 -198496620 - MIR SINE MIR 0 262 3 2321 94 0 0 chr3 29028631 29028929 -198495649 + AluSq SINE Alu 1 298 -15 1270 246 67 41 chr3 29028956 29029671 -198494907 + L1MC5 LINE L1 7194 7927 -34 22 0 0 0 chr3 29029706 29029728 -198494850 + AT_rich Low_complexity Low_complexity 1 22 0 456 325 92 55 chr3 29030366 29030714 -198493864 + L2 LINE L2 2904 3264 -8 6056 137 14 23 chr3 29031723 29032657 -198491921 - L1MA5 LINE L1 -2 6298 5379 1789 169 3 23 chr3 29032657 29032965 -198491613 - AluJb SINE Alu -6 306 5 6056 137 14 23 chr3 29032965 29033753 -198490825 - L1MA5 LINE L1 -921 5379 4585 24 0 0 0 chr3 29034446 29034470 -198490108 + AT_rich Low_complexity Low_complexity 1 24 0 1379 242 120 19 chr3 29034472 29034890 -198489688 - MLT1C LTR MaLR -7 460 1 303 243 54 0 chr3 29035604 29035678 -198488900 + L1MC4 LINE L1 6626 6703 -1339 183 167 42 42 chr3 29036349 29036397 -198488181 + L2 LINE L2 3255 3302 -11 288 193 68 45 chr3 29036647 29036735 -198487843 - MER5B DNA MER1_type -6 172 83 313 290 48 11 chr3 29036883 29037048 -198487530 - MIR SINE MIR -62 146 5 249 108 0 0 chr3 29037607 29037644 -198486934 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2043 99 37 0 chr3 29037646 29037919 -198486659 - AluSg SINE Alu -27 283 1 32 57 0 0 chr3 29038587 29038640 -198485938 + AT_rich Low_complexity Low_complexity 1 53 0 2064 100 3 17 chr3 29038793 29039132 -198485446 - AluSx SINE Alu 0 335 1 22 0 0 0 chr3 29039259 29039281 -198485297 + AT_rich Low_complexity Low_complexity 1 22 0 298 29 0 0 chr3 29039322 29039357 -198485221 - U2 snRNA snRNA -153 35 1 1399 215 9 57 chr3 29040740 29040890 -198483688 + AluJo SINE Alu 1 130 -182 186 43 0 0 chr3 29040890 29040913 -198483665 + (CA)n Simple_repeat Simple_repeat 2 24 0 1399 215 9 57 chr3 29040913 29041078 -198483500 + AluJo SINE Alu 130 301 -11 329 266 106 18 chr3 29042882 29042995 -198481583 - L2 LINE L2 -40 3232 3110 432 318 85 30 chr3 29043342 29043742 -198480836 + L1ME3A LINE L1 4415 4836 -1310 1010 303 50 35 chr3 29043766 29044162 -198480416 - L2 LINE L2 0 3313 2912 273 311 84 4 chr3 29044181 29044406 -198480172 + L1ME3A LINE L1 4879 5121 -1025 701 270 105 58 chr3 29044499 29045088 -198479490 + L1ME3A LINE L1 5268 5884 -286 24 53 0 0 chr3 29045660 29045698 -198478880 + AT_rich Low_complexity Low_complexity 1 38 0 1302 214 31 10 chr3 29045767 29046056 -198478522 + AluJo SINE Alu 1 295 -17 342 282 129 24 chr3 29046831 29047001 -198477577 + MIR SINE MIR 43 230 -32 189 94 0 0 chr3 29047397 29047429 -198477149 + (A)n Simple_repeat Simple_repeat 1 32 0 501 266 25 60 chr3 29049173 29049372 -198475206 - LTR16A1 LTR ERVL 0 457 266 368 143 42 17 chr3 29050275 29050394 -198474184 + (TA)n Simple_repeat Simple_repeat 1 122 0 1074 198 156 8 chr3 29051369 29051632 -198472946 - AluJb SINE Alu 0 302 1 25 75 0 0 chr3 29051867 29051920 -198472658 + AT_rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr3 29054232 29054277 -198470301 + AT_rich Low_complexity Low_complexity 1 45 0 223 240 0 0 chr3 29054425 29054475 -198470103 - MIR SINE MIR -108 154 105 3970 84 20 7 chr3 29054664 29055211 -198469367 + MER41A LTR ERV1 1 554 0 262 286 113 8 chr3 29055583 29055831 -198468747 + HAL1 LINE L1 981 1254 -1253 2205 128 31 0 chr3 29056803 29057156 -198467422 - THE1B LTR MaLR 0 364 1 230 255 39 98 chr3 29057280 29057367 -198467211 - MIR SINE MIR -94 114 32 2878 12 0 3 chr3 29057367 29057686 -198466892 - AluYb8 SINE Alu 0 318 1 230 255 39 98 chr3 29057686 29057700 -198466878 - MIR SINE MIR -176 32 19 526 303 108 48 chr3 29058065 29058498 -198466080 + L1MC4a LINE L1 5472 5930 -1878 362 336 29 0 chr3 29058697 29058834 -198465744 + MLT1J2 LTR MaLR 51 191 -259 237 263 26 13 chr3 29058949 29059025 -198465553 + MLT1I LTR MaLR 319 395 -14 244 313 121 38 chr3 29059354 29059693 -198464885 - L2 LINE L2 -1216 2098 1732 410 235 12 0 chr3 29060496 29060577 -198464001 + MIR SINE MIR 105 186 -76 379 316 70 9 chr3 29061061 29061276 -198463302 + LTR33 LTR ERVL 294 521 0 322 280 72 96 chr3 29061361 29061486 -198463092 - MIR SINE MIR -65 143 21 212 179 0 0 chr3 29062016 29062055 -198462523 + (TA)n Simple_repeat Simple_repeat 1 39 0 328 291 51 32 chr3 29062126 29062284 -198462294 - MIR SINE MIR -56 206 46 2056 122 26 3 chr3 29062859 29063162 -198461416 - AluSg SINE Alu 0 310 1 478 338 88 4 chr3 29063283 29063511 -198461067 + MIR SINE MIR 11 257 -5 464 323 69 67 chr3 29064435 29064896 -198459682 + MLT1K LTR MaLR 125 586 -2 458 239 72 43 chr3 29065196 29065272 -198459306 - MIR SINE MIR -18 244 161 1499 236 129 53 chr3 29065272 29065342 -198459236 - MLT1E LTR MaLR 0 593 530 2294 66 0 30 chr3 29065342 29065644 -198458934 + AluY SINE Alu 1 293 -18 1499 236 129 53 chr3 29065644 29066124 -198458454 - MLT1E LTR MaLR -63 530 1 458 239 72 43 chr3 29066124 29066185 -198458393 - MIR SINE MIR -101 161 103 322 302 11 110 chr3 29066838 29066947 -198457631 - MIR SINE MIR -11 251 166 1968 95 0 69 chr3 29066947 29067251 -198457327 - AluSg SINE Alu -27 283 1 322 302 11 110 chr3 29067251 29067323 -198457255 - MIR SINE MIR -96 166 88 219 69 0 0 chr3 29067833 29067862 -198456716 + (T)n Simple_repeat Simple_repeat 1 29 0 1348 294 20 31 chr3 29067929 29068382 -198456196 - MER69 DNA AcHobo -778 448 1 1646 157 74 84 chr3 29068932 29069326 -198455252 - MLT1B LTR MaLR 0 390 1 2195 110 3 0 chr3 29069440 29069740 -198454838 - AluSc SINE Alu -8 301 1 267 270 122 0 chr3 29069777 29069851 -198454727 - MLT1J LTR MaLR -349 162 80 2098 165 61 20 chr3 29069902 29070309 -198454269 + MSTB LTR MaLR 1 424 -2 216 0 0 0 chr3 29070647 29070671 -198453907 + (TG)n Simple_repeat Simple_repeat 2 25 0 457 290 62 7 chr3 29072157 29072302 -198452276 + MIR3 SINE MIR 9 161 -47 575 311 106 8 chr3 29072308 29072543 -198452035 - MIR SINE MIR 0 262 5 192 312 18 37 chr3 29072643 29072752 -198451826 + MIR3 SINE MIR 10 116 -92 1179 220 38 107 chr3 29072886 29073382 -198451196 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr3 29073466 29073487 -198451091 + AT_rich Low_complexity Low_complexity 1 21 0 2224 229 16 20 chr3 29073701 29074198 -198450380 + LTR31 LTR ERV1 109 603 -16 303 28 0 0 chr3 29074257 29074293 -198450285 + (TG)n Simple_repeat Simple_repeat 2 37 0 297 0 0 0 chr3 29076408 29076441 -198448137 + (TG)n Simple_repeat Simple_repeat 1 33 0 285 29 0 0 chr3 29076719 29076753 -198447825 + (TG)n Simple_repeat Simple_repeat 1 34 0 399 295 152 28 chr3 29077887 29078104 -198446474 + MIR SINE MIR 2 245 -17 1536 168 3 63 chr3 29078224 29078540 -198446038 + AluJo SINE Alu 11 307 -5 347 310 50 0 chr3 29080621 29080721 -198443857 - MER3 DNA MER1_type -104 105 1 464 235 157 69 chr3 29080783 29081000 -198443578 - MIR SINE MIR -6 256 21 209 198 163 35 chr3 29081138 29081224 -198443354 - MIR SINE MIR -6 256 160 369 0 0 0 chr3 29082101 29082142 -198442436 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 239 11 65 chr3 29083201 29083293 -198441285 + MIR SINE MIR 20 106 -102 323 355 36 12 chr3 29083479 29083645 -198440933 - MER5B DNA MER1_type -2 176 7 340 345 36 0 chr3 29083490 29083629 -198440949 + MER5A DNA MER1_type 24 167 -22 217 196 20 0 chr3 29083667 29083718 -198440860 - MIR SINE MIR 0 262 211 266 314 17 81 chr3 29084856 29085028 -198439550 - MIR SINE MIR -55 207 47 2179 119 3 10 chr3 29085047 29085359 -198439219 - AluSp SINE Alu -3 310 1 299 337 50 0 chr3 29085415 29085516 -198439062 + MIR3 SINE MIR 60 165 -43 411 325 117 10 chr3 29085628 29085825 -198438753 - MIR SINE MIR -4 258 41 370 301 88 22 chr3 29086878 29087014 -198437564 - L2 LINE L2 -1 3312 3168 207 343 57 14 chr3 29087030 29087170 -198437408 - L2 LINE L2 -88 3225 3080 1759 198 0 3 chr3 29088768 29089081 -198435497 + AluJo SINE Alu 1 312 0 587 167 29 23 chr3 29089085 29089259 -198435319 + GA-rich Low_complexity Low_complexity 4 178 0 21 36 0 0 chr3 29089691 29089719 -198434859 + AT_rich Low_complexity Low_complexity 1 28 0 220 407 23 0 chr3 29089990 29090076 -198434502 - L2 LINE L2 -22 3250 3163 736 307 13 9 chr3 29090152 29090383 -198434195 - MIR SINE MIR -2 260 29 267 0 22 44 chr3 29090388 29090433 -198434145 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4803 91 12 4 chr3 29090433 29091124 -198433454 - L1PB1 LINE L1 -10 6141 5446 289 158 0 0 chr3 29091126 29091180 -198433398 - MLT2A2 LTR ERVL -8 512 403 231 175 0 0 chr3 29091195 29091252 -198433326 + (TA)n Simple_repeat Simple_repeat 2 58 0 3149 69 20 7 chr3 29091252 29091660 -198432918 - MLT2A2 LTR ERVL -40 413 1 3358 172 6 9 chr3 29091660 29092446 -198432132 - L1P5 LINE L1 -702 5449 4670 1636 237 69 18 chr3 29093068 29093561 -198431017 + LTR40a LTR ERVL 2 519 0 727 254 53 37 chr3 29094012 29094256 -198430322 + L2 LINE L2 3062 3309 -4 451 268 82 9 chr3 29094288 29094508 -198430070 - L1ME4a LINE L1 -182 5939 5704 26 50 0 0 chr3 29094654 29094694 -198429884 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 29094927 29094947 -198429631 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1607 208 50 14 chr3 29095267 29095627 -198428951 + MLT1A2 LTR MaLR 1 373 -1 243 246 18 0 chr3 29096187 29096244 -198428334 + GA-rich Low_complexity Low_complexity 2 59 0 26 0 0 0 chr3 29096279 29096305 -198428273 + AT_rich Low_complexity Low_complexity 1 26 0 885 128 0 61 chr3 29096494 29096607 -198427971 - FLAM_C SINE Alu -173 139 36 1796 201 26 124 chr3 29096607 29097285 -198427293 + LTR9 LTR ERV1 1 612 0 885 128 0 61 chr3 29097285 29097319 -198427259 - FLAM_C SINE Alu -276 36 1 2385 176 77 15 chr3 29097452 29097970 -198426608 + L1MB3 LINE L1 5634 6183 0 442 212 0 30 chr3 29098645 29098744 -198425834 - MER3 DNA MER1_type -113 96 1 3273 181 22 0 chr3 29098910 29099501 -198425077 - MER6A DNA MER2_type -1 604 1 190 308 33 22 chr3 29101242 29101333 -198423245 - MIR SINE MIR -140 122 31 466 239 6 6 chr3 29102177 29102344 -198422234 + CT-rich Low_complexity Low_complexity 1 167 0 21 0 0 0 chr3 29102797 29102818 -198421760 + AT_rich Low_complexity Low_complexity 1 21 0 1929 137 38 32 chr3 29102938 29103310 -198421268 + THE1C LTR MaLR 1 374 -1 628 244 6 38 chr3 29103771 29103931 -198420647 - MIR SINE MIR -105 157 3 235 362 38 0 chr3 29103924 29104029 -198420549 + MER5A DNA MER1_type 4 112 -77 * 36 62 0 0 chr3 29105378 29105442 -198419136 + AT_rich Low_complexity Low_complexity 1 64 0 2555 51 0 29 chr3 29105859 29106175 -198418403 + AluY SINE Alu 1 307 -4 213 121 0 0 chr3 29106373 29106406 -198418172 + (T)n Simple_repeat Simple_repeat 1 33 0 2407 47 0 0 chr3 29107336 29107632 -198416946 - L1PA4 LINE L1 -3 6152 5857 189 195 0 0 chr3 29108135 29108176 -198416402 + (TA)n Simple_repeat Simple_repeat 2 42 0 254 237 17 0 chr3 29108342 29108401 -198416177 + (TA)n Simple_repeat Simple_repeat 2 61 0 951 197 208 4 chr3 29109445 29109714 -198414864 - MER5C DNA MER1_type 0 324 1 248 224 61 61 chr3 29109918 29109971 -198414607 - MER5B DNA MER1_type 0 178 123 180 0 0 0 chr3 29109971 29109991 -198414587 + (CAA)n Simple_repeat Simple_repeat 2 21 0 248 224 61 61 chr3 29109991 29110035 -198414543 - MER5B DNA MER1_type -54 124 81 181 291 55 0 chr3 29110088 29110143 -198414435 - MIR SINE MIR -88 174 117 22 56 0 0 chr3 29110296 29110332 -198414246 + AT_rich Low_complexity Low_complexity 1 36 0 299 366 54 37 chr3 29110599 29110848 -198413730 + MIR3 SINE MIR 12 262 0 392 274 18 18 chr3 29111006 29111119 -198413459 + L3 LINE CR1 1440 1552 -25 1838 160 18 75 chr3 29111125 29111524 -198413054 - MLT1B LTR MaLR -14 376 1 341 313 92 31 chr3 29111553 29111716 -198412862 + MIR3 SINE MIR 30 202 -6 211 132 57 0 chr3 29113409 29113462 -198411116 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 191 241 17 35 chr3 29113470 29113528 -198411050 - L2 LINE L2 0 3272 3216 240 214 0 0 chr3 29113877 29113933 -198410645 + CT-rich Low_complexity Low_complexity 2 57 0 197 344 33 33 chr3 29113956 29114046 -198410532 + L2 LINE L2 3220 3309 -4 201 267 67 0 chr3 29114321 29114366 -198410212 + MIR SINE MIR 203 250 -12 185 282 0 0 chr3 29114334 29114373 -198410205 + L2 LINE L2 3264 3302 -11 * 461 248 110 0 chr3 29114529 29114638 -198409940 + L2 LINE L2 3189 3309 -4 190 186 47 0 chr3 29114727 29114770 -198409808 + MER5A DNA MER1_type 68 112 -77 251 200 0 14 chr3 29114955 29115025 -198409553 + CT-rich Low_complexity Low_complexity 2 70 0 180 224 0 86 chr3 29116269 29116327 -198408251 + L2 LINE L2 3219 3271 -1 23 68 0 0 chr3 29116787 29116831 -198407747 + AT_rich Low_complexity Low_complexity 1 44 0 547 336 81 5 chr3 29117746 29117969 -198406609 - MIR SINE MIR -21 241 2 270 292 23 0 chr3 29118008 29118104 -198406474 - MIR SINE MIR -60 148 79 258 56 0 0 chr3 29118749 29118785 -198405793 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 29118962 29118983 -198405595 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 29121586 29121622 -198402956 + AT_rich Low_complexity Low_complexity 1 36 0 1882 153 0 3 chr3 29123271 29123558 -198401020 - AluJb SINE Alu -26 286 1 1016 282 32 42 chr3 29124196 29124576 -198400002 + LTR16A LTR ERVL 16 391 -59 206 250 36 71 chr3 29125730 29125814 -198398764 + MIR SINE MIR 170 250 -12 27 29 0 0 chr3 29126338 29126372 -198398206 + AT_rich Low_complexity Low_complexity 1 34 0 2993 283 70 3 chr3 29126719 29127394 -198397184 + MER72 LTR ERV1 1 720 -2 221 57 29 0 chr3 29127825 29127860 -198396718 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 213 178 0 0 chr3 29128292 29128337 -198396241 + T-rich Low_complexity Low_complexity 1 45 0 1009 164 19 39 chr3 29129238 29129445 -198395133 - MER3 DNA MER1_type 0 209 7 332 282 92 0 chr3 29130157 29130288 -198394290 - L2 LINE L2 -1282 2032 1890 480 18 0 0 chr3 29130821 29130878 -198393700 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 426 289 9 9 chr3 29131358 29131472 -198393106 - MIR SINE MIR -130 132 19 21 0 0 0 chr3 29132024 29132045 -198392533 + AT_rich Low_complexity Low_complexity 1 21 0 344 313 124 35 chr3 29132513 29132714 -198391864 - MIR SINE MIR -18 244 26 30 0 0 0 chr3 29135236 29135266 -198389312 + AT_rich Low_complexity Low_complexity 1 30 0 241 303 0 13 chr3 29135592 29135668 -198388910 + GA-rich Low_complexity Low_complexity 2 76 0 21 0 0 0 chr3 29135964 29135985 -198388593 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 29136317 29136339 -198388239 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 29137156 29137183 -198387395 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 29137330 29137356 -198387222 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr3 29137397 29137424 -198387154 + (A)n Simple_repeat Simple_repeat 1 27 0 201 159 0 0 chr3 29137787 29137831 -198386747 + A-rich Low_complexity Low_complexity 1 44 0 582 269 57 14 chr3 29138382 29138594 -198385984 + L3b LINE CR1 1104 1324 -259 187 322 17 0 chr3 29138751 29138810 -198385768 - MIR3 SINE MIR -5 203 144 788 221 13 72 chr3 29138813 29139048 -198385530 - MER58A DNA MER1_type 0 224 4 627 219 53 43 chr3 29139060 29139247 -198385331 - MER5A DNA MER1_type 0 189 1 1620 228 83 51 chr3 29139312 29139459 -198385119 + MLT1E2 LTR MaLR 9 150 -476 2017 105 4 0 chr3 29139459 29139726 -198384852 + AluY SINE Alu 24 291 -20 1620 228 83 51 chr3 29139726 29140165 -198384413 + MLT1E2 LTR MaLR 150 616 -10 640 35 23 0 chr3 29140465 29140552 -198384026 + (TC)n Simple_repeat Simple_repeat 1 89 0 999 159 164 22 chr3 29142563 29142844 -198381734 - MER33 DNA MER1_type -12 312 1 552 292 32 40 chr3 29142988 29143297 -198381281 + MLT1H LTR MaLR 10 302 -228 1606 148 41 47 chr3 29143498 29143815 -198380763 - L1MC1 LINE L1 0 6333 6019 773 181 14 14 chr3 29144003 29144147 -198380431 - FRAM SINE Alu -21 155 12 253 238 59 20 chr3 29144378 29144479 -198380099 - L1MC1 LINE L1 -360 5806 5702 21 95 0 0 chr3 29144488 29144551 -198380027 + AT_rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr3 29145231 29145252 -198379326 + (A)n Simple_repeat Simple_repeat 1 21 0 452 200 350 0 chr3 29145790 29145930 -198378648 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 29146245 29146276 -198378302 + AT_rich Low_complexity Low_complexity 1 31 0 273 208 0 0 chr3 29146308 29146380 -198378198 + (CATA)n Simple_repeat Simple_repeat 1 72 0 997 196 16 0 chr3 29146771 29146955 -198377623 + MER5A DNA MER1_type 1 187 -2 346 375 82 35 chr3 29147087 29147685 -198376893 + L2 LINE L2 925 1550 -1764 2038 182 20 24 chr3 29147803 29148254 -198376324 - L1MB4 LINE L1 0 6180 5732 450 256 67 30 chr3 29148255 29148419 -198376159 - MIR SINE MIR -81 181 12 293 333 119 11 chr3 29149327 29149588 -198374990 + LTR16C LTR ERVL 200 488 -3 280 302 75 9 chr3 29149597 29149703 -198374875 + MIR SINE MIR 38 150 -58 1323 71 12 0 chr3 29149973 29150143 -198374435 - AluSg/x SINE Alu -4 308 137 2495 38 27 0 chr3 29150143 29150435 -198374143 - AluY SINE Alu -11 300 1 229 291 0 0 chr3 29150884 29150939 -198373639 + MIR SINE MIR 66 120 -142 217 362 21 21 chr3 29151046 29151140 -198373438 + MIR SINE MIR 23 116 -146 32 57 0 0 chr3 29151846 29151899 -198372679 + AT_rich Low_complexity Low_complexity 1 53 0 498 305 84 5 chr3 29152037 29152227 -198372351 - MIR SINE MIR -29 233 29 515 313 126 0 chr3 29152311 29152539 -198372039 + MIR SINE MIR 8 262 0 471 278 80 19 chr3 29153135 29153297 -198371281 + MIR SINE MIR 2 173 -89 360 290 101 18 chr3 29153294 29153463 -198371115 - L2 LINE L2 0 3313 3131 * 401 197 0 0 chr3 29153587 29153653 -198370925 + Charlie5 DNA MER1_type 2 67 -2545 4477 173 17 9 chr3 29153668 29154700 -198369878 + L1PB4 LINE L1 5103 6138 -18 7057 53 3 3 chr3 29154703 29155601 -198368977 + L1PA7 LINE L1 5256 6153 -1 773 161 90 5 chr3 29155688 29155899 -198368679 + Charlie5 DNA MER1_type 2335 2563 -49 2190 129 0 16 chr3 29155920 29156237 -198368341 - AluSx SINE Alu 0 312 1 467 287 0 8 chr3 29156310 29156432 -198368146 - L2 LINE L2 -251 3062 2942 288 209 52 163 chr3 29156645 29156817 -198367761 + MIR SINE MIR 33 185 -77 2443 86 34 23 chr3 29157262 29157613 -198366965 - THE1A LTR MaLR 0 355 1 11531 99 6 1 chr3 29157613 29159184 -198365394 - THE1A-int LTR MaLR 0 1580 1 2722 82 3 0 chr3 29159184 29159538 -198365040 - THE1A LTR MaLR 0 355 1 338 297 34 0 chr3 29159570 29159688 -198364890 + LTR33 LTR ERVL 385 506 -15 187 250 39 0 chr3 29160024 29160076 -198364502 - MIR SINE MIR -204 58 5 986 177 0 0 chr3 29160595 29160776 -198363802 - AluSg/x SINE Alu 0 315 135 523 259 77 28 chr3 29160781 29160924 -198363654 + L2 LINE L2 3164 3313 0 745 301 21 14 chr3 29161059 29161338 -198363240 - Charlie8 DNA MER1_type -2136 281 1 389 284 104 22 chr3 29161672 29161806 -198362772 - MIR3 SINE MIR -12 196 52 313 143 48 0 chr3 29162376 29162439 -198362139 - L1MB8 LINE L1 0 6178 6113 477 71 24 12 chr3 29162892 29162976 -198361602 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 442 261 60 27 chr3 29164024 29164208 -198360370 + MIR3 SINE MIR 8 197 -11 415 320 160 0 chr3 29164351 29164526 -198360052 - MIR SINE MIR -19 243 41 225 0 0 0 chr3 29164962 29164987 -198359591 + (CA)n Simple_repeat Simple_repeat 1 25 0 249 33 0 0 chr3 29165586 29165616 -198358962 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1659 245 40 21 chr3 29165832 29166362 -198358216 + L1ME1 LINE L1 5571 6110 -56 296 369 56 10 chr3 29166790 29166988 -198357590 - L3 LINE CR1 -10 1567 1361 198 250 0 80 chr3 29167051 29167139 -198357439 + MIR SINE MIR 61 141 -67 2539 53 0 0 chr3 29167140 29167441 -198357137 - AluY SINE Alu -10 301 1 23 68 0 0 chr3 29168619 29168663 -198355915 + AT_rich Low_complexity Low_complexity 1 44 0 224 328 40 52 chr3 29168855 29169029 -198355549 + L2 LINE L2 2488 2659 -655 3339 245 137 133 chr3 29169469 29170933 -198353645 + L2 LINE L2 373 1829 -1484 628 273 17 25 chr3 29170933 29171171 -198353407 - L1MA9 LINE L1 -38 6274 6039 3339 245 137 133 chr3 29171171 29171209 -198353369 + L2 LINE L2 1829 1865 -1448 2861 170 19 16 chr3 29171209 29171791 -198352787 - L1PB4 LINE L1 -7 6149 5566 3339 245 137 133 chr3 29171791 29172875 -198351703 + L2 LINE L2 1865 3237 -76 182 61 0 30 chr3 29172875 29172908 -198351670 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3339 245 137 133 chr3 29172908 29172938 -198351640 + L2 LINE L2 3237 3265 -48 1991 86 0 41 chr3 29172947 29173214 -198351364 + AluSc SINE Alu 6 261 -48 181 298 0 0 chr3 29173238 29173285 -198351293 + L2 LINE L2 3226 3272 0 248 234 31 47 chr3 29173574 29173638 -198350940 + L2 LINE L2 2685 2747 -567 2158 132 48 25 chr3 29173652 29174008 -198350570 + THE1B LTR MaLR 1 364 0 825 260 6 0 chr3 29174023 29174204 -198350374 - MER5A DNA MER1_type -6 183 2 761 292 36 20 chr3 29174559 29174809 -198349769 - MIR SINE MIR -6 256 3 353 268 41 0 chr3 29175237 29175334 -198349244 + MER5A DNA MER1_type 4 104 -85 3611 118 65 2 chr3 29175433 29175999 -198348579 + LTR43 LTR ERV1 1 602 0 331 244 64 0 chr3 29176015 29176093 -198348485 + MIR SINE MIR 66 148 -60 875 186 6 38 chr3 29176114 29176297 -198348281 - MER5B DNA MER1_type -1 177 1 912 171 10 93 chr3 29176311 29176379 -198348199 + MER5A DNA MER1_type 7 79 -110 1712 170 28 3 chr3 29176379 29176662 -198347916 + AluJo SINE Alu 1 290 -22 912 171 10 93 chr3 29176662 29176786 -198347792 + MER5A DNA MER1_type 79 183 -6 2288 90 3 3 chr3 29177918 29178218 -198346360 + AluSx SINE Alu 1 300 -12 7623 141 4 12 chr3 29179189 29180577 -198344001 + L1PA7 LINE L1 938 2314 -3832 261 0 0 0 chr3 29180723 29180752 -198343826 + (A)n Simple_repeat Simple_repeat 1 29 0 20847 98 46 0 chr3 29180752 29184560 -198340018 + L1PA7 LINE L1 2310 6170 0 303 265 210 19 chr3 29184820 29184982 -198339596 - MIR SINE MIR -19 243 51 * 419 304 143 51 chr3 29184974 29185247 -198339331 + L2 LINE L2 2999 3296 -17 182 150 25 0 chr3 29186180 29186220 -198338358 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 375 185 74 19 chr3 29186763 29186871 -198337707 - L2 LINE L2 -8 3305 3192 441 281 77 39 chr3 29187120 29187523 -198337055 - L1MC/D LINE L1 -2000 5808 5399 1894 164 25 25 chr3 29187577 29187944 -198336634 - L1MC1 LINE L1 0 6333 5967 425 275 8 36 chr3 29188224 29188403 -198336175 - MIR SINE MIR -63 145 21 1671 184 29 29 chr3 29188670 29189044 -198335534 + MLT1A2 LTR MaLR 1 374 0 328 309 32 65 chr3 29189286 29189514 -198335064 + MIR SINE MIR 31 245 -17 593 280 74 34 chr3 29189587 29190007 -198334571 - LTR33A LTR ERVL -25 498 2 241 353 12 0 chr3 29190167 29190252 -198334326 + MIR SINE MIR 39 124 -138 324 284 114 52 chr3 29191391 29191464 -198333114 - MIR SINE MIR -19 243 176 601 271 6 22 chr3 29191464 29191645 -198332933 + MER5B DNA MER1_type 1 178 0 324 284 114 52 chr3 29191645 29191782 -198332796 - MIR SINE MIR -86 176 20 461 274 159 25 chr3 29192017 29192174 -198332404 - MER5A DNA MER1_type -3 186 9 407 313 18 0 chr3 29192308 29192420 -198332158 + MER81 DNA DNA 1 114 0 508 313 38 33 chr3 29192431 29192642 -198331936 + MIR SINE MIR 48 259 -3 204 226 0 19 chr3 29193163 29193216 -198331362 + L2 LINE L2 3214 3265 -7 204 270 131 73 chr3 29193863 29194000 -198330578 + MIR SINE MIR 84 228 -34 * 483 326 116 5 chr3 29193961 29194185 -198330393 - MIR SINE MIR 0 262 14 240 35 0 0 chr3 29194963 29194992 -198329586 + (TG)n Simple_repeat Simple_repeat 2 30 0 311 243 199 58 chr3 29195077 29195247 -198329331 - L1MC/D LINE L1 -1982 5826 5615 2142 95 0 0 chr3 29195247 29195520 -198329058 + AluSx SINE Alu 29 301 -11 311 243 199 58 chr3 29195520 29195575 -198329003 - L1MC/D LINE L1 -2193 5615 5569 25 0 0 0 chr3 29196082 29196107 -198328471 + AT_rich Low_complexity Low_complexity 1 25 0 258 289 0 74 chr3 29196236 29196357 -198328221 - MIR SINE MIR -49 213 102 227 307 18 61 chr3 29197005 29197119 -198327459 - MIR SINE MIR -62 146 38 285 266 156 9 chr3 29197185 29197294 -198327284 - MIR SINE MIR -79 183 59 205 304 87 0 chr3 29197363 29197432 -198327146 + L3 LINE CR1 1501 1575 -2 280 324 0 0 chr3 29198199 29198270 -198326308 + MER5A DNA MER1_type 81 151 -38 336 332 62 26 chr3 29198294 29199054 -198325524 + L1M4 LINE L1 4561 5347 -799 * 1863 237 21 2 chr3 29199051 29199523 -198325055 + L1M4 LINE L1 4627 5107 -1039 2525 87 5 14 chr3 29199642 29200011 -198324567 + L1PA11 LINE L1 5809 6174 0 230 334 108 39 chr3 29200172 29200477 -198324101 - L2 LINE L2 -737 2577 2252 499 258 111 42 chr3 29200478 29200668 -198323910 + MER63A DNA MER1_type 2 204 -6 201 162 0 0 chr3 29200952 29200989 -198323589 + A-rich Low_complexity Low_complexity 4 40 0 27 29 0 0 chr3 29201429 29201463 -198323115 + AT_rich Low_complexity Low_complexity 1 34 0 666 290 53 32 chr3 29201616 29201995 -198322583 - L1ME4a LINE L1 -249 5872 5486 28 0 0 0 chr3 29202850 29202878 -198321700 + AT_rich Low_complexity Low_complexity 1 28 0 352 309 14 22 chr3 29203195 29203334 -198321244 + MLT1H LTR MaLR 24 161 -388 378 189 50 151 chr3 29203486 29203645 -198320933 + MLT1H LTR MaLR 407 549 0 41 0 0 0 chr3 29204239 29204280 -198320298 + AT_rich Low_complexity Low_complexity 1 41 0 335 321 0 0 chr3 29205708 29205814 -198318764 - MIR SINE MIR 0 262 157 273 341 37 12 chr3 29207900 29208030 -198316548 - MIR SINE MIR -27 181 47 196 264 48 104 chr3 29208137 29208262 -198316316 + MIR SINE MIR 72 189 -73 21 0 0 0 chr3 29209302 29209323 -198315255 + AT_rich Low_complexity Low_complexity 1 21 0 415 194 31 10 chr3 29210098 29210196 -198314382 - MER96B DNA MER1_type? -1 416 317 26 64 0 0 chr3 29210196 29210243 -198314335 + AT_rich Low_complexity Low_complexity 1 47 0 1373 175 35 32 chr3 29210264 29210578 -198314000 + MER96B DNA MER1_type? 93 407 -10 1593 181 30 79 chr3 29210782 29211213 -198313365 - L1MA9 LINE L1 -1 6311 5902 310 254 174 22 chr3 29211454 29211592 -198312986 - MIR SINE MIR -56 206 48 21 0 0 0 chr3 29212352 29212373 -198312205 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 99 0 chr3 29212390 29212501 -198312077 + HAL1 LINE L1 19 140 -2367 497 280 73 71 chr3 29212816 29213184 -198311394 + HAL1 LINE L1 532 900 -1607 1137 35 0 0 chr3 29213254 29213395 -198311183 + AluY SINE Alu 171 311 0 325 301 46 31 chr3 29213425 29213621 -198310957 + HAL1 LINE L1 971 1169 -1338 1962 113 4 4 chr3 29213623 29213898 -198310680 + AluSx SINE Alu 4 278 -34 883 275 121 67 chr3 29214118 29214922 -198309656 + HAL1 LINE L1 1654 2500 -7 207 232 0 0 chr3 29214924 29214980 -198309598 + (CA)n Simple_repeat Simple_repeat 1 56 0 330 228 79 26 chr3 29215828 29215942 -198308636 + L1ME4a LINE L1 6000 6119 -2 2224 101 0 0 chr3 29217159 29217456 -198307122 - AluSc SINE Alu -12 297 1 968 220 5 5 chr3 29217783 29217983 -198306595 + MER58A DNA MER1_type 14 213 -11 387 274 112 46 chr3 29269404 29270073 -198254505 + L1M4 LINE L1 2636 3348 -2798 256 258 70 39 chr3 29270818 29270946 -198253632 + L1M1 LINE L1 5311 5442 -860 1760 170 7 16 chr3 29270970 29271276 -198253302 + AluJb SINE Alu 1 303 -9 2196 108 0 3 chr3 29271365 29271662 -198252916 - AluY SINE Alu -15 296 1 674 294 33 22 chr3 29271744 29272166 -198252412 + L1ME3A LINE L1 5518 5945 -225 207 100 0 0 chr3 29272727 29272757 -198251821 + (CA)n Simple_repeat Simple_repeat 2 31 0 235 259 0 0 chr3 29273759 29273813 -198250765 + (TA)n Simple_repeat Simple_repeat 2 55 0 406 283 156 30 chr3 29274694 29274963 -198249615 - MLT1L LTR MaLR -4 611 309 1657 138 32 44 chr3 29275061 29275402 -198249176 + MER1B DNA MER1_type 1 337 0 24 0 0 0 chr3 29276106 29276130 -198248448 + AT_rich Low_complexity Low_complexity 1 24 0 342 336 18 9 chr3 29276194 29276304 -198248274 + MIR SINE MIR 17 127 -135 280 0 182 0 chr3 29276308 29276352 -198248226 - MADE1 DNA Mariner -1 79 28 284 308 19 28 chr3 29276353 29276460 -198248118 + MIR SINE MIR 141 246 -16 209 211 53 0 chr3 29276611 29276668 -198247910 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 338 264 23 11 chr3 29277851 29277938 -198246640 - L2 LINE L2 -2 3311 3224 2070 221 48 13 chr3 29277944 29278419 -198246159 - MLT1D LTR MaLR -2 503 12 762 280 143 28 chr3 29278432 29279004 -198245574 - L2 LINE L2 -107 3206 2579 615 65 0 0 chr3 29279043 29279120 -198245458 + MADE1 DNA Mariner 4 80 0 1925 144 10 0 chr3 29279133 29279425 -198245153 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr3 29280434 29280471 -198244107 + AT_rich Low_complexity Low_complexity 1 37 0 236 339 105 29 chr3 29281935 29282106 -198242472 + L3 LINE CR1 1393 1576 -1 411 250 31 62 chr3 29282362 29282490 -198242088 - L2 LINE L2 0 3313 3190 685 257 180 80 chr3 29282512 29282963 -198241615 + MLT1D LTR MaLR 3 498 -7 269 345 37 12 chr3 29282965 29283126 -198241452 + MIR SINE MIR 13 145 -63 1601 150 129 24 chr3 29283979 29284312 -198240266 + THE1C LTR MaLR 8 375 0 1109 214 68 21 chr3 29285830 29286111 -198238467 - MER58B DNA MER1_type 0 341 48 243 265 254 6 chr3 29286542 29286723 -198237855 - MLT1H LTR MaLR -19 530 305 450 236 147 61 chr3 29286741 29286882 -198237696 - MLT1H LTR MaLR -326 204 91 2252 122 0 0 chr3 29286882 29287177 -198237401 + AluSc SINE Alu 1 295 -14 450 236 147 61 chr3 29287177 29287275 -198237303 - MLT1H LTR MaLR -439 91 3 458 271 110 7 chr3 29288008 29288163 -198236415 - MER104 DNA Tc2 0 180 10 225 315 37 28 chr3 29288219 29288327 -198236251 - MIR SINE MIR -50 212 104 22 0 0 0 chr3 29288327 29288349 -198236229 + AT_rich Low_complexity Low_complexity 1 22 0 591 338 32 32 chr3 29288832 29289202 -198235376 - MLT1I LTR MaLR -2 407 38 562 306 40 30 chr3 29290415 29290716 -198233862 - L1MC4a LINE L1 -1892 5916 5613 294 217 0 0 chr3 29291192 29291261 -198233317 + (TA)n Simple_repeat Simple_repeat 2 70 0 30 109 0 0 chr3 29291269 29291397 -198233181 + AT_rich Low_complexity Low_complexity 1 128 0 255 274 96 14 chr3 29291478 29291551 -198233027 - MLT1I LTR MaLR -105 304 226 220 238 8 127 chr3 29293395 29293521 -198231057 - MIR SINE MIR -44 218 108 203 161 0 0 chr3 29294310 29294341 -198230237 + A-rich Low_complexity Low_complexity 4 34 0 207 161 0 0 chr3 29294696 29294727 -198229851 + polypyrimidine Low_complexity Low_complexity 6 36 0 184 347 14 28 chr3 29296250 29296322 -198228256 - MIR SINE MIR -115 93 23 239 91 0 0 chr3 29297017 29297050 -198227528 - MER3 DNA MER1_type -161 48 16 2580 178 28 46 chr3 29297115 29297682 -198226896 - L1MB1 LINE L1 -1 6167 5611 1716 182 51 2 chr3 29297677 29298106 -198226472 + L1 LINE L1 3119 3568 -2578 * 23 33 0 0 chr3 29298752 29298782 -198225796 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr3 29298892 29298918 -198225660 + (T)n Simple_repeat Simple_repeat 1 26 0 1350 179 13 4 chr3 29299099 29299334 -198225244 - AluJo SINE Alu -75 237 1 322 208 30 10 chr3 29299334 29299435 -198225143 - Charlie2 DNA MER1_type -88 2774 2672 1164 327 50 40 chr3 29299492 29300556 -198224022 + L1MEc LINE L1 55 1129 -5267 1135 230 53 13 chr3 29300580 29300884 -198223694 + L1ME3 LINE L1 5504 5819 -347 192 77 0 0 chr3 29301386 29301412 -198223166 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 308 326 68 15 chr3 29302952 29303084 -198221494 + MIR SINE MIR 53 191 -71 767 232 68 12 chr3 29303134 29303384 -198221194 + L1ME3 LINE L1 5896 6159 -3 602 232 129 0 chr3 29303728 29303883 -198220695 + MER45A DNA AcHobo 3 177 -1 283 290 0 0 chr3 29304013 29304075 -198220503 + L2 LINE L2 3246 3307 -6 1287 283 139 29 chr3 29305478 29306039 -198218539 + L2 LINE L2 2039 2661 -653 236 303 32 32 chr3 29306327 29306482 -198218096 + L2 LINE L2 3011 3165 -148 339 82 0 0 chr3 29306545 29306594 -198217984 + MLT2A2 LTR ERVL 1 49 -404 360 194 28 0 chr3 29306595 29306667 -198217911 + L2 LINE L2 3209 3282 -31 1175 148 16 0 chr3 29307275 29307464 -198217114 + AluSc SINE Alu 104 295 -14 1897 179 16 25 chr3 29307659 29308027 -198216551 + MLT1A1 LTR MaLR 1 365 0 607 292 67 5 chr3 29309473 29309682 -198214896 - MER58A DNA MER1_type 0 224 3 452 253 213 13 chr3 29313171 29313321 -198211257 - MER5A DNA MER1_type -6 183 4 281 314 137 11 chr3 29313707 29313882 -198210696 + MIR SINE MIR 54 250 -12 288 0 0 0 chr3 29314336 29314368 -198210210 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr3 29315282 29315319 -198209259 + AT_rich Low_complexity Low_complexity 1 37 0 2102 108 0 10 chr3 29315461 29315757 -198208821 + AluSq SINE Alu 1 293 -20 786 145 99 29 chr3 29315803 29315975 -198208603 - MER5A DNA MER1_type -5 184 1 592 189 88 40 chr3 29316190 29316254 -198208324 + MER5B DNA MER1_type 21 81 -97 1082 217 94 60 chr3 29316254 29316637 -198207941 - MSTD LTR MaLR 0 396 1 592 189 88 40 chr3 29316637 29316720 -198207858 + MER5B DNA MER1_type 81 175 -3 744 210 155 0 chr3 29317086 29317267 -198207311 + MER3 DNA MER1_type 1 209 0 736 244 56 5 chr3 29317419 29317632 -198206946 - MER58A DNA MER1_type 0 224 1 1086 317 101 21 chr3 29320126 29320850 -198203728 + L2 LINE L2 2534 3313 0 291 283 29 43 chr3 29320859 29320997 -198203581 + Charlie7 DNA MER1_type 2129 2264 -348 2207 77 31 3 chr3 29321014 29321300 -198203278 + AluSq SINE Alu 1 294 -19 31 88 0 0 chr3 29321309 29321389 -198203189 + AT_rich Low_complexity Low_complexity 1 80 0 227 305 114 8 chr3 29322552 29322683 -198201895 - MIR SINE MIR -60 202 58 4717 177 6 22 chr3 29322763 29323811 -198200767 - L1MB1 LINE L1 0 6168 5136 2681 188 19 83 chr3 29323823 29324574 -198200004 - L1MB1 LINE L1 -1322 4824 4122 404 240 16 33 chr3 29325112 29325233 -198199345 + MER5C DNA MER1_type 2 120 -204 290 233 0 58 chr3 29325265 29325351 -198199227 + MER5C DNA MER1_type 244 324 0 183 333 35 23 chr3 29325420 29325444 -198199134 - MIR SINE MIR -111 151 129 216 97 0 0 chr3 29325444 29325475 -198199103 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 183 333 35 23 chr3 29325475 29325537 -198199041 - MIR SINE MIR -133 129 64 25 0 0 0 chr3 29325746 29325771 -198198807 + AT_rich Low_complexity Low_complexity 1 25 0 308 256 90 0 chr3 29325842 29325920 -198198658 - L2 LINE L2 -3 3269 3185 267 195 49 24 chr3 29327304 29327386 -198197192 + HsTC2 DNA Tc2 3 86 -1812 231 260 0 0 chr3 29327371 29327421 -198197157 + HsTC2 DNA Tc2 1849 1898 0 * 661 289 37 11 chr3 29327421 29327611 -198196967 - MIR SINE MIR -67 195 1 294 265 194 18 chr3 29327845 29328015 -198196563 - L1ME LINE L1 -303 5818 5619 335 263 197 26 chr3 29329465 29329520 -198195058 + MER5A DNA MER1_type 12 56 -133 14576 136 23 2 chr3 29329520 29331889 -198192689 + Tigger1 DNA MER2_type 1 2418 0 335 263 197 26 chr3 29331889 29331985 -198192593 + MER5A DNA MER1_type 56 189 0 31 0 0 0 chr3 29332571 29332602 -198191976 + AT_rich Low_complexity Low_complexity 1 31 0 189 209 15 75 chr3 29332677 29332744 -198191834 + MIR SINE MIR 83 145 -63 2413 230 80 85 chr3 29333761 29334159 -198190419 - MER63C DNA MER1_type -131 929 531 655 296 9 22 chr3 29334159 29334382 -198190196 + MER58A DNA MER1_type 4 223 -1 2413 230 80 85 chr3 29334382 29334986 -198189592 - MER63C DNA MER1_type -529 531 63 1297 198 41 16 chr3 29334990 29335018 -198189560 - MLT2D LTR ERVL -8 389 363 384 40 0 0 chr3 29335018 29335068 -198189510 + (TG)n Simple_repeat Simple_repeat 2 51 0 1297 198 41 16 chr3 29335068 29335397 -198189181 - MLT2D LTR ERVL -34 363 1 21 36 0 0 chr3 29336796 29336824 -198187754 + AT_rich Low_complexity Low_complexity 1 28 0 207 341 181 15 chr3 29337786 29337991 -198186587 - L2 LINE L2 -1367 1947 1709 1548 184 109 48 chr3 29339003 29339443 -198185135 - MLT1C LTR MaLR 0 467 1 2383 84 0 0 chr3 29339627 29339935 -198184643 + AluSx SINE Alu 1 308 -4 276 331 112 58 chr3 29340267 29340509 -198184069 + MIR SINE MIR 8 262 0 21 0 0 0 chr3 29340612 29340633 -198183945 + AT_rich Low_complexity Low_complexity 1 21 0 360 327 92 32 chr3 29340704 29340921 -198183657 + L2 LINE L2 3084 3313 0 25 0 0 0 chr3 29341945 29341970 -198182608 + AT_rich Low_complexity Low_complexity 1 25 0 338 293 102 32 chr3 29342161 29342318 -198182260 - MER112 DNA MER1_type -89 171 4 286 344 56 8 chr3 29342329 29342454 -198182124 + MIR SINE MIR 20 150 -112 22 35 0 0 chr3 29343634 29343663 -198180915 + AT_rich Low_complexity Low_complexity 1 29 0 2014 122 3 44 chr3 29344610 29344931 -198179647 - AluSx SINE Alu -4 308 1 244 368 13 0 chr3 29345696 29345772 -198178806 + LTR67 LTR ERVL 114 190 -367 297 320 30 0 chr3 29346508 29346608 -198177970 + ERVL LTR ERVL 4962 5064 -700 554 257 63 27 chr3 29348068 29348290 -198176288 - MLT1L LTR MaLR -221 394 165 957 231 0 44 chr3 29348330 29348559 -198176019 + MER20 DNA MER1_type 1 219 0 879 233 5 5 chr3 29348676 29348865 -198175713 - MER5A DNA MER1_type 0 189 1 187 286 43 14 chr3 29348896 29348966 -198175612 + MIR SINE MIR 71 142 -120 380 265 85 7 chr3 29349336 29349509 -198175069 + L1ME LINE L1 5317 5499 -622 344 264 47 0 chr3 29350164 29350270 -198174308 - MIR SINE MIR -65 197 87 271 291 284 0 chr3 29350350 29350491 -198174087 - MIR SINE MIR -2 260 80 420 70 0 0 chr3 29350499 29350556 -198174022 - Alu SINE Alu -243 68 12 404 241 112 0 chr3 29350829 29350945 -198173633 - MIR SINE MIR -34 228 100 269 271 18 118 chr3 29351617 29351787 -198172791 - MIR3 SINE MIR -18 190 38 924 32 0 48 chr3 29352026 29352150 -198172428 + L1PA3 LINE L1 6038 6155 0 522 241 38 8 chr3 29352831 29352964 -198171614 + L1ME1 LINE L1 6024 6160 -6 2238 109 0 3 chr3 29353313 29353617 -198170961 + AluSc SINE Alu 1 303 -6 304 313 10 10 chr3 29353823 29353919 -198170659 + MIR3 SINE MIR 92 187 -21 207 0 0 0 chr3 29354496 29354519 -198170059 + (A)n Simple_repeat Simple_repeat 1 23 0 256 280 154 16 chr3 29354881 29354980 -198169598 + LTR37B LTR ERV1 7 91 -377 198 0 0 0 chr3 29354980 29355002 -198169576 + (TA)n Simple_repeat Simple_repeat 2 23 0 256 280 154 16 chr3 29355002 29355084 -198169494 + LTR37B LTR ERV1 91 213 -255 230 241 17 0 chr3 29356797 29356855 -198167723 - L1M4 LINE L1 -433 5751 5693 501 32 0 0 chr3 29357409 29357472 -198167106 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 265 334 119 59 chr3 29357685 29358005 -198166573 - L2 LINE L2 0 3272 2934 207 0 0 0 chr3 29359375 29359398 -198165180 + (CA)n Simple_repeat Simple_repeat 2 24 0 398 316 47 7 chr3 29360701 29360851 -198163727 + MIR SINE MIR 35 189 -73 1002 266 136 16 chr3 29361288 29361664 -198162914 + MER110 LTR ERV1 71 491 0 223 274 20 0 chr3 29362736 29362787 -198161791 - L2 LINE L2 -4 3268 3217 209 213 0 0 chr3 29363661 29363708 -198160870 + T-rich Low_complexity Low_complexity 1 47 0 280 339 69 21 chr3 29366108 29366297 -198158281 - L1M4 LINE L1 -476 5645 5448 2004 131 0 0 chr3 29366440 29366730 -198157848 + AluSx SINE Alu 1 290 -22 246 62 0 0 chr3 29368466 29368498 -198156080 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 218 338 95 34 chr3 29368498 29368637 -198155941 - L2 LINE L2 -10 3262 3112 589 199 44 15 chr3 29368654 29368790 -198155788 + L1ME2 LINE L1 6024 6163 -1 334 225 108 33 chr3 29368858 29368978 -198155600 - MER103 DNA DNA -37 129 1 561 215 114 0 chr3 29369310 29369497 -198155081 + MER58C DNA MER1_type 1 215 0 247 274 89 32 chr3 29369769 29369893 -198154685 - L2 LINE L2 -1036 2278 2148 2382 49 3 30 chr3 29370229 29370534 -198154044 + AluY SINE Alu 6 302 -9 1584 204 13 30 chr3 29370971 29371368 -198153210 + L1 LINE L1 3331 3720 -2426 4877 173 51 10 chr3 29371368 29372330 -198152248 + L1PA16 LINE L1 4430 5488 -678 1817 37 0 0 chr3 29372330 29372548 -198152030 - L1PA5 LINE L1 -6 6148 5931 4877 173 51 10 chr3 29372548 29373253 -198151325 + L1PA16 LINE L1 5488 6163 -3 2412 244 84 22 chr3 29373421 29374233 -198150345 + L1MD1 LINE L1 3 999 -5541 2389 231 53 29 chr3 29374230 29375423 -198149155 + L1MD1 LINE L1 4815 6045 -708 * 3672 57 11 2 chr3 29375430 29375907 -198148671 - L1PA7 LINE L1 -1 6153 5673 2322 76 0 0 chr3 29375911 29376228 -198148350 + L1P LINE L1 4962 5278 -868 2132 189 40 17 chr3 29376228 29376631 -198147947 + MSTB1 LTR MaLR 19 430 -2 773 267 37 0 chr3 29376640 29376831 -198147747 + L1MD1 LINE L1 6023 6220 -416 852 286 97 0 chr3 29376862 29377232 -198147346 + L1MDa LINE L1 2611 3016 -3524 1013 252 52 0 chr3 29377232 29377482 -198147096 + AluJo SINE Alu 1 263 -49 827 140 19 0 chr3 29377495 29377740 -198146838 + GA-rich Low_complexity Low_complexity 1 249 0 373 268 10 0 chr3 29377745 29377842 -198146736 + L1MDa LINE L1 3007 3104 -3436 6116 263 38 6 chr3 29377849 29379790 -198144788 + L1MDa LINE L1 3593 5595 -945 2305 226 86 12 chr3 29379790 29381159 -198143419 + L1MB8 LINE L1 4650 6177 -1 2389 67 0 19 chr3 29381170 29381485 -198143093 + AluY SINE Alu 1 309 -2 318 346 39 6 chr3 29383118 29383274 -198141304 + MIR SINE MIR 102 262 0 477 293 144 0 chr3 29384593 29384781 -198139797 - MIR SINE MIR -5 257 43 376 219 45 71 chr3 29385824 29385979 -198138599 + L2 LINE L2 3115 3265 -48 24 77 0 0 chr3 29386871 29386923 -198137655 + AT_rich Low_complexity Low_complexity 1 52 0 302 250 42 90 chr3 29388495 29388639 -198135939 - MIR SINE MIR -1 261 125 347 267 43 26 chr3 29389619 29389735 -198134843 + MIR SINE MIR 94 211 -51 387 263 71 75 chr3 29389791 29390057 -198134521 - L2 LINE L2 -3 3310 3046 258 317 61 0 chr3 29390432 29390514 -198134064 + MIR SINE MIR 5 91 -171 2526 59 0 0 chr3 29390781 29391087 -198133491 - AluY SINE Alu -5 306 1 22 35 0 0 chr3 29391162 29391191 -198133387 + AT_rich Low_complexity Low_complexity 1 29 0 237 246 0 0 chr3 29392564 29392629 -198131949 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 22 56 0 0 chr3 29393328 29393364 -198131214 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr3 29394033 29394081 -198130497 + AT_rich Low_complexity Low_complexity 1 48 0 200 188 0 0 chr3 29394387 29394419 -198130159 + (TG)n Simple_repeat Simple_repeat 1 32 0 231 156 0 0 chr3 29394419 29394464 -198130114 - L1MC4 LINE L1 -1340 6702 6658 311 145 14 0 chr3 29394467 29394536 -198130042 + GA-rich Low_complexity Low_complexity 1 70 0 258 298 196 6 chr3 29394714 29394882 -198129696 + MIR SINE MIR 53 252 -10 395 297 36 72 chr3 29395787 29395840 -198128738 - L1ME4a LINE L1 -224 5897 5844 2044 141 0 6 chr3 29395840 29396152 -198128426 + AluSx SINE Alu 1 310 -2 395 297 36 72 chr3 29396152 29396404 -198128174 - L1ME4a LINE L1 -277 5844 5603 2002 110 4 4 chr3 29396637 29396940 -198127638 - AluSg SINE Alu 0 303 1 21 36 0 0 chr3 29397306 29397334 -198127244 + AT_rich Low_complexity Low_complexity 1 28 0 315 205 77 0 chr3 29398108 29398186 -198126392 - LTR68 LTR ERV1 -636 104 21 182 36 0 36 chr3 29398820 29398848 -198125730 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8940 86 11 5 chr3 29398848 29400888 -198123690 - L1PA7 LINE L1 0 6154 4106 498 294 105 0 chr3 29401784 29401927 -198122651 + MIR SINE MIR 32 189 -73 218 284 15 0 chr3 29403463 29403530 -198121048 + MIR SINE MIR 99 166 -96 1989 231 53 27 chr3 29403768 29404293 -198120285 - MER119 DNA MER1_type -2 581 43 1380 222 3 7 chr3 29405194 29405548 -198119030 + AluJb SINE Alu 1 353 0 23 0 0 0 chr3 29405653 29405676 -198118902 + AT_rich Low_complexity Low_complexity 1 23 0 2417 101 5 41 chr3 29406199 29406567 -198118011 + THE1A LTR MaLR 1 355 0 2046 89 7 0 chr3 29406567 29406849 -198117729 + THE1A-int LTR MaLR 1 284 -1296 329 367 105 4 chr3 29407582 29407811 -198116767 + MIR SINE MIR 11 262 0 225 328 0 0 chr3 29409106 29409170 -198115408 + L2 LINE L2 3210 3273 -40 5320 153 28 56 chr3 29409170 29410509 -198114069 + L1MA5 LINE L1 4978 6300 0 22 0 0 0 chr3 29410659 29410681 -198113897 + AT_rich Low_complexity Low_complexity 1 22 0 676 388 57 25 chr3 29411105 29411812 -198112766 - L2 LINE L2 -337 2977 2249 229 308 0 13 chr3 29412118 29412196 -198112382 + MER103 DNA DNA 23 99 -67 273 57 0 0 chr3 29413703 29413738 -198110840 + (A)n Simple_repeat Simple_repeat 1 35 0 2385 88 0 7 chr3 29413756 29414064 -198110514 - AluSx SINE Alu -6 306 1 239 277 92 8 chr3 29414425 29414544 -198110034 + MIR SINE MIR 68 196 -66 345 275 11 11 chr3 29414585 29414676 -198109902 - L2 LINE L2 -8 3264 3174 1452 219 61 58 chr3 29414737 29415276 -198109302 + L1MC4 LINE L1 7502 8042 0 1838 138 0 68 chr3 29415857 29416182 -198108396 - AluSx SINE Alu -9 303 1 20238 169 41 17 chr3 29417075 29417795 -198106783 + L1MA3 LINE L1 13 715 -6850 207 0 0 0 chr3 29417795 29417818 -198106760 + (GGAGA)n Simple_repeat Simple_repeat 4 26 0 20238 169 41 17 chr3 29417818 29418505 -198106073 + L1MA3 LINE L1 715 1384 -6181 1639 151 127 6 chr3 29418505 29418837 -198105741 + THE1C LTR MaLR 1 372 -3 20238 169 41 17 chr3 29418837 29422439 -198102139 + L1MA3 LINE L1 1384 5150 -2415 287 219 122 12 chr3 29422989 29423071 -198101507 + MLT1H LTR MaLR 23 113 -436 2409 78 0 0 chr3 29423072 29423367 -198101211 - AluSx SINE Alu -17 295 1 1233 221 25 31 chr3 29424031 29424348 -198100230 - L1P LINE L1 -2491 3655 3341 2524 45 0 19 chr3 29424797 29425105 -198099473 - AluY SINE Alu -9 302 1 566 279 42 5 chr3 29425116 29425331 -198099247 - L1MB8 LINE L1 -1 6177 5955 5412 166 12 4 chr3 29425542 29426545 -198098033 - L1P LINE L1 -751 5395 4385 504 139 0 0 chr3 29426702 29426781 -198097797 + L1PA16 LINE L1 6085 6163 -3 2437 242 54 23 chr3 29426949 29427733 -198096845 + L1MDa LINE L1 3 971 -5569 285 274 9 57 chr3 29428813 29428919 -198095659 - MIR3 SINE MIR -18 190 90 667 108 0 54 chr3 29429232 29429343 -198095235 + L1PA3 LINE L1 6039 6143 -12 7479 150 21 11 chr3 29429525 29431864 -198092714 + L1MA3 LINE L1 5356 7715 -9 477 0 0 0 chr3 29431864 29431917 -198092661 + (TA)n Simple_repeat Simple_repeat 2 54 0 309 250 184 20 chr3 29432422 29432574 -198092004 + L1MDa LINE L1 1283 1459 -5081 1377 243 96 42 chr3 29432586 29432749 -198091829 + L1ME3A LINE L1 5651 5804 -366 1971 123 14 0 chr3 29432749 29433026 -198091552 + AluSg SINE Alu 1 281 -29 180 0 0 0 chr3 29433030 29433050 -198091528 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1377 243 96 42 chr3 29433050 29433362 -198091216 + L1ME3A LINE L1 5806 6157 -13 1353 198 6 58 chr3 29433574 29433902 -198090676 + AluJo SINE Alu 1 311 -1 192 398 41 0 chr3 29434256 29434354 -198090224 + L2 LINE L2 3160 3261 -11 295 345 26 9 chr3 29435405 29435518 -198089060 - MIR SINE MIR -62 146 32 2058 207 92 44 chr3 29435916 29436457 -198088121 + MLT1F1 LTR MaLR 1 567 0 263 105 263 0 chr3 29436543 29436600 -198087978 - MER116 DNA Mariner -6 74 3 8220 201 8 39 chr3 29436603 29439213 -198085365 - L1PA14 LINE L1 -4 6157 3603 243 0 0 0 chr3 29439213 29439240 -198085338 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 27625 30 17 1 chr3 29439241 29445251 -198079327 - L1PA2 LINE L1 -4 6151 4 195 380 19 19 chr3 29447867 29447975 -198076603 - L2 LINE L2 -16 3256 3149 607 272 110 11 chr3 29448004 29448195 -198076383 + MIR SINE MIR 26 235 -27 781 316 25 24 chr3 29448746 29449197 -198075381 - L1ME4a LINE L1 -254 5867 5409 516 293 69 35 chr3 29449931 29450276 -198074302 + MER90 LTR ERV1 211 665 -4 5825 236 22 156 chr3 29450398 29452661 -198071917 - L1M2 LINE L1 -4883 2326 1 3462 59 0 2 chr3 29453194 29453633 -198070945 + L1PA5 LINE L1 5717 6154 0 315 0 0 0 chr3 29453994 29454029 -198070549 + (TG)n Simple_repeat Simple_repeat 1 35 0 1016 222 168 61 chr3 29454063 29454504 -198070074 + MER41B LTR ERV1 114 601 -34 1036 239 59 42 chr3 29454538 29454944 -198069634 + Charlie4a DNA MER1_type 65 477 -31 183 220 0 0 chr3 29454953 29455003 -198069575 + (CA)n Simple_repeat Simple_repeat 2 51 0 186 353 84 0 chr3 29455673 29455792 -198068786 + MIR SINE MIR 29 157 -105 1500 182 14 62 chr3 29455812 29456145 -198068433 + L1MA4 LINE L1 1959 2274 -4575 2316 86 0 0 chr3 29456145 29456437 -198068141 + AluY SINE Alu 1 292 -19 1500 182 14 62 chr3 29456437 29456471 -198068107 + L1MA4 LINE L1 2274 2308 -4541 1944 62 0 23 chr3 29456471 29456727 -198067851 + MER41A LTR ERV1 218 467 -87 12929 190 36 30 chr3 29456732 29459707 -198064871 + L1MA4 LINE L1 2309 5314 -1534 1996 144 3 19 chr3 29459707 29460019 -198064559 + AluSq SINE Alu 1 307 -6 12929 190 36 30 chr3 29460019 29460681 -198063897 + L1MA4 LINE L1 5314 5970 -878 1881 128 22 22 chr3 29460681 29461150 -198063428 + MER4A LTR ERV1 55 660 -4 207 0 0 0 chr3 29461179 29461202 -198063376 + (A)n Simple_repeat Simple_repeat 1 23 0 1913 135 0 6 chr3 29461206 29461525 -198063053 + L1MA4 LINE L1 5996 6312 -693 1070 198 34 0 chr3 29461525 29461754 -198062824 + L1MA4 LINE L1 6752 6996 -6 211 194 0 0 chr3 29462078 29462114 -198062464 + CT-rich Low_complexity Low_complexity 2 37 0 260 313 78 12 chr3 29462798 29462964 -198061614 + L1MC/D LINE L1 11 187 -5932 1451 282 146 12 chr3 29463179 29463951 -198060627 - L1MC4a LINE L1 -1636 6172 5297 367 318 48 66 chr3 29463962 29464251 -198060327 - L1MC4a LINE L1 -960 5186 4903 328 322 35 28 chr3 29464271 29464414 -198060164 + L1MC/D LINE L1 309 452 -5667 2377 55 6 13 chr3 29464475 29464786 -198059792 - AluY SINE Alu -2 309 1 421 315 125 29 chr3 29464796 29465139 -198059439 + L1MC/D LINE L1 2771 3146 -2983 297 300 124 21 chr3 29465216 29465449 -198059129 + L1MC/D LINE L1 5541 5797 -1994 2283 102 0 0 chr3 29465470 29465774 -198058804 + AluY SINE Alu 1 304 -7 213 218 12 54 chr3 29466016 29466128 -198058450 + A-rich Low_complexity Low_complexity 1 107 0 396 263 77 62 chr3 29467801 29468010 -198056568 - MIR SINE MIR -49 213 2 23 33 0 0 chr3 29469101 29469131 -198055447 + AT_rich Low_complexity Low_complexity 1 30 0 866 236 37 23 chr3 29472279 29472495 -198052083 + MER20 DNA MER1_type 1 219 0 449 235 102 102 chr3 29472602 29472934 -198051644 + MLT1I LTR MaLR 71 402 -7 230 114 0 23 chr3 29473017 29473061 -198051517 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 291 28 0 0 chr3 29473063 29473099 -198051479 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr3 29473288 29473312 -198051266 + AT_rich Low_complexity Low_complexity 1 24 0 523 305 129 28 chr3 29473312 29473738 -198050840 - L1MDa LINE L1 -3634 2495 2068 356 294 169 13 chr3 29474029 29474302 -198050276 - L1MDa LINE L1 -4594 1535 1290 750 345 88 39 chr3 29474411 29475154 -198049424 - L1MDa LINE L1 -4959 1160 382 342 0 0 0 chr3 29475157 29475195 -198049383 + (T)n Simple_repeat Simple_repeat 1 38 0 482 211 32 49 chr3 29475868 29475991 -198048587 - MER45A DNA AcHobo 0 178 58 37 76 0 0 chr3 29476139 29476218 -198048360 + AT_rich Low_complexity Low_complexity 1 79 0 4293 146 44 5 chr3 29476610 29477390 -198047188 + L1PB4 LINE L1 5347 6156 0 453 291 209 11 chr3 29477596 29477778 -198046800 + MIR SINE MIR 36 253 -9 703 239 11 6 chr3 29477890 29478066 -198046512 - MER5B DNA MER1_type -1 177 1 439 308 69 65 chr3 29478152 29478399 -198046179 + MIR SINE MIR 14 261 -1 303 128 21 0 chr3 29480010 29480057 -198044521 - THE1C LTR MaLR 0 428 381 * 2762 78 28 74 chr3 29480056 29480515 -198044063 + MLT2A1 LTR ERVL 7 444 0 19225 71 15 53 chr3 29480515 29483266 -198041312 + HERVL-A1 LTR ERVL 1 2647 -3007 20497 77 25 13 chr3 29483266 29485046 -198039532 + HERVL-A1 LTR ERVL 2894 4751 -903 182 147 0 29 chr3 29485046 29485080 -198039498 + L2 LINE L2 1661 1693 -1621 20497 77 25 13 chr3 29485080 29485995 -198038583 + HERVL-A1 LTR ERVL 4751 5654 0 2690 96 61 28 chr3 29485995 29486383 -198038195 + MLT2A1 LTR ERVL 1 406 -38 450 0 0 0 chr3 29486383 29486433 -198038145 + (TA)n Simple_repeat Simple_repeat 2 51 0 2690 96 61 28 chr3 29486433 29486472 -198038106 + MLT2A1 LTR ERVL 406 442 -2 830 184 84 145 chr3 29486473 29486821 -198037757 - THE1C LTR MaLR -67 308 1 9210 137 15 37 chr3 29486821 29488402 -198036176 - THE1C-int LTR MaLR 0 1580 35 1283 183 32 39 chr3 29488408 29488692 -198035886 - THE1C LTR MaLR -93 282 1 706 296 23 8 chr3 29488889 29489146 -198035432 - MIR SINE MIR 0 262 2 1817 153 0 0 chr3 29489250 29489525 -198035053 + AluSx SINE Alu 1 275 -37 432 0 0 0 chr3 29489533 29489581 -198034997 + (TAA)n Simple_repeat Simple_repeat 2 49 0 397 272 19 10 chr3 29490018 29490121 -198034457 - MER81 DNA DNA 0 114 11 353 319 0 0 chr3 29490117 29490211 -198034367 - MER81 DNA DNA -20 94 1 * 1261 223 63 36 chr3 29490238 29490602 -198033976 + MLT1A2 LTR MaLR 1 374 0 7442 33 10 0 chr3 29492854 29493991 -198030587 - L1PA4 LINE L1 0 6155 5014 2182 27 0 0 chr3 29493991 29494250 -198030328 + L1PA4 LINE L1 4762 5020 -1126 479 309 144 10 chr3 29494459 29494660 -198029918 + MIR SINE MIR 31 258 -4 45 45 0 0 chr3 29495018 29495084 -198029494 + AT_rich Low_complexity Low_complexity 1 66 0 191 401 36 6 chr3 29495478 29495645 -198028933 + L2 LINE L2 2696 2867 -447 253 159 101 14 chr3 29495705 29495774 -198028804 + MER116 DNA Mariner 6 80 0 537 295 41 58 chr3 29495939 29496425 -198028153 + LTR33 LTR ERVL 5 521 0 485 298 45 11 chr3 29496428 29496606 -198027972 - MIR SINE MIR -48 214 31 264 323 112 12 chr3 29496824 29496985 -198027593 + L3 LINE CR1 645 821 -756 358 125 0 42 chr3 29497055 29497127 -198027451 - L1MB7 LINE L1 -19 6165 6097 234 129 57 100 chr3 29497207 29497277 -198027301 - MLT1K LTR MaLR -138 450 384 328 327 101 6 chr3 29497362 29497530 -198027048 - MLT1K LTR MaLR -318 270 87 771 353 52 29 chr3 29497624 29498109 -198026469 + L3 LINE CR1 836 1331 -246 493 284 132 15 chr3 29498290 29498494 -198026084 + MIR SINE MIR 35 262 0 378 248 97 35 chr3 29499708 29499821 -198024757 - L2 LINE L2 -12 3301 3182 561 296 99 32 chr3 29499824 29500138 -198024440 + MLT1E LTR MaLR 4 338 -255 325 297 68 61 chr3 29500142 29500290 -198024288 - L2 LINE L2 -1468 1846 1698 189 74 0 0 chr3 29500625 29500652 -198023926 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 450 319 117 8 chr3 29500753 29501019 -198023559 - L2 LINE L2 -1667 1647 1353 466 127 0 0 chr3 29501140 29501211 -198023367 + AluSp/q SINE Alu 226 296 -17 300 145 16 0 chr3 29501211 29501273 -198023305 - L1 LINE L1 -1817 4329 4267 766 181 77 16 chr3 29501304 29501486 -198023092 - L1 LINE L1 -1010 5136 4944 7130 161 66 33 chr3 29503290 29505199 -198019379 - L1MA8 LINE L1 -2 6289 4269 2044 120 3 0 chr3 29505199 29505550 -198019028 + AluSq SINE Alu 1 352 0 7130 161 66 33 chr3 29505550 29506290 -198018288 - L1MA8 LINE L1 -2022 4269 3554 1373 226 14 0 chr3 29506293 29506568 -198018010 + AluJo SINE Alu 1 279 -33 231 61 0 0 chr3 29506568 29506601 -198017977 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 797 179 62 6 chr3 29506641 29506820 -198017758 - L1MA8 LINE L1 -2585 3561 3373 23 33 0 0 chr3 29506969 29506999 -198017579 + AT_rich Low_complexity Low_complexity 1 30 0 335 271 31 39 chr3 29507452 29507581 -198016997 - MLT1H LTR MaLR -16 533 406 588 285 36 51 chr3 29507887 29508140 -198016438 + MIR SINE MIR 14 262 0 2090 126 0 13 chr3 29508275 29508576 -198016002 - AluSx SINE Alu -15 297 1 216 97 0 0 chr3 29508757 29508788 -198015790 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr3 29509374 29509397 -198015181 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 29509437 29509459 -198015119 + AT_rich Low_complexity Low_complexity 1 22 0 283 229 29 14 chr3 29510077 29510147 -198014431 - MER5B DNA MER1_type -104 74 4 275 296 0 0 chr3 29510224 29510312 -198014266 - Charlie2 DNA MER1_type -2599 263 176 282 238 79 30 chr3 29510338 29510439 -198014139 - Charlie2 DNA MER1_type -2672 110 5 411 179 107 54 chr3 29510441 29510521 -198014057 + L2 LINE L2 3196 3285 -28 2440 228 16 44 chr3 29510521 29511091 -198013487 + MLT2B3 LTR ERVL 1 554 0 411 179 107 54 chr3 29511091 29511122 -198013456 + L2 LINE L2 3285 3313 0 21 57 0 0 chr3 29511456 29511491 -198013087 + AT_rich Low_complexity Low_complexity 1 35 0 26 74 0 0 chr3 29511664 29511718 -198012860 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr3 29511874 29511897 -198012681 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 507 324 109 19 chr3 29512077 29512389 -198012189 + L2 LINE L2 2521 2860 -454 753 234 16 113 chr3 29512429 29512749 -198011829 + L2 LINE L2 3021 3309 -4 1565 175 3 62 chr3 29512804 29513113 -198011465 - AluJb SINE Alu -21 291 1 1711 261 109 4 chr3 29513340 29513853 -198010725 + MLT1F1 LTR MaLR 1 567 0 378 324 43 7 chr3 29513904 29514043 -198010535 + MIR SINE MIR 82 225 -37 1496 273 33 9 chr3 29514370 29514798 -198009780 + LTR16A LTR ERVL 13 450 0 991 222 19 0 chr3 29514806 29515013 -198009565 - ERVL LTR ERVL -4789 975 765 2533 177 14 14 chr3 29515180 29515671 -198008907 + L1MA7 LINE L1 5629 6119 -172 358 339 40 24 chr3 29515736 29515860 -198008718 + MIR SINE MIR 1 126 -136 195 42 0 0 chr3 29517063 29517087 -198007491 + (TG)n Simple_repeat Simple_repeat 2 25 0 414 39 0 0 chr3 29517219 29517271 -198007307 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr3 29517302 29517323 -198007255 + (TG)n Simple_repeat Simple_repeat 2 22 0 2000 110 36 0 chr3 29518483 29518764 -198005814 + AluSc SINE Alu 1 291 -18 369 185 0 65 chr3 29518771 29518863 -198005715 - MER3 DNA MER1_type 0 209 124 431 260 204 10 chr3 29519297 29519493 -198005085 + MLT2E LTR ERVL 393 626 -2 326 322 90 61 chr3 29519637 29520147 -198004431 - MLT1L LTR MaLR -87 528 4 374 267 34 23 chr3 29523370 29523546 -198001032 + GA-rich Low_complexity Low_complexity 3 180 0 223 356 52 22 chr3 29524310 29524445 -198000133 + MIR SINE MIR 50 188 -74 259 307 79 26 chr3 29525256 29525370 -197999208 + L2 LINE L2 1181 1300 -2014 183 179 232 36 chr3 29525630 29525686 -197998892 + MER5A DNA MER1_type 1 67 -122 183 206 0 0 chr3 29525702 29525736 -197998842 + MER5A DNA MER1_type 153 186 -3 410 309 34 23 chr3 29525750 29525925 -197998653 - MER5B DNA MER1_type 0 178 2 1183 330 119 28 chr3 29526080 29527449 -197997129 + L2 LINE L2 1805 3306 -7 26 0 0 0 chr3 29527831 29527857 -197996721 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr3 29530111 29530139 -197994439 + AT_rich Low_complexity Low_complexity 1 28 0 225 226 0 0 chr3 29530632 29530685 -197993893 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 35 24 0 0 chr3 29531317 29531359 -197993219 + AT_rich Low_complexity Low_complexity 1 42 0 1689 204 0 18 chr3 29531403 29531741 -197992837 + MLT1A1 LTR MaLR 2 333 -32 254 200 15 15 chr3 29532249 29532314 -197992264 + MLT1J2 LTR MaLR 15 79 -371 404 244 52 17 chr3 29532439 29532554 -197992024 + MER58B DNA MER1_type 222 340 -1 24 67 0 0 chr3 29532731 29532776 -197991802 + AT_rich Low_complexity Low_complexity 1 45 0 32651 85 12 9 chr3 29532823 29537375 -197987203 + L1PA5 LINE L1 11 4576 -1570 3561 57 11 0 chr3 29537376 29537830 -197986748 + L1PA5 LINE L1 5696 6154 0 1056 274 94 39 chr3 29538007 29538474 -197986104 + MLT1J LTR MaLR 3 495 -16 447 232 62 26 chr3 29540107 29540299 -197984279 + LTR41 LTR ERVL 101 353 -420 300 197 61 0 chr3 29540456 29540522 -197984056 + LTR41 LTR ERVL 601 670 -103 2038 125 0 13 chr3 29540574 29540877 -197983701 - AluSc SINE Alu -10 299 1 232 222 16 16 chr3 29540890 29540953 -197983625 + LTR41 LTR ERVL 703 765 -8 399 297 61 47 chr3 29541650 29541946 -197982632 + ERVL LTR ERVL 904 1203 -4561 597 314 96 28 chr3 29542119 29542473 -197982105 + ERVL LTR ERVL 1453 1830 -3824 679 285 86 8 chr3 29542866 29543122 -197981456 + LTR41 LTR ERVL 1 276 -497 407 226 95 78 chr3 29543248 29543491 -197981087 + LTR41 LTR ERVL 496 742 -31 22 56 0 0 chr3 29543679 29543715 -197980863 + AT_rich Low_complexity Low_complexity 1 36 0 41 82 0 0 chr3 29544079 29544176 -197980402 + AT_rich Low_complexity Low_complexity 1 97 0 335 181 9 69 chr3 29544437 29544553 -197980025 - HAL1b LINE L1 -535 813 705 326 324 128 0 chr3 29544562 29544741 -197979837 - L1ME3A LINE L1 -8 6162 5961 309 232 53 0 chr3 29544781 29544876 -197979702 - HAL1b LINE L1 -713 635 536 404 208 135 48 chr3 29544919 29545126 -197979452 - HAL1b LINE L1 -693 655 431 221 128 43 0 chr3 29545126 29545173 -197979405 + (TA)n Simple_repeat Simple_repeat 1 49 0 490 342 23 26 chr3 29545283 29545590 -197978988 - LTR16B LTR ERVL -122 342 37 323 298 58 42 chr3 29545645 29545672 -197978906 - HAL1b LINE L1 -969 379 354 1221 192 38 92 chr3 29545672 29545989 -197978589 - AluJo SINE Alu -2 300 1 323 298 58 42 chr3 29545989 29546152 -197978426 - HAL1b LINE L1 -994 354 186 35 54 0 0 chr3 29546545 29546601 -197977977 + AT_rich Low_complexity Low_complexity 1 56 0 924 162 60 0 chr3 29546920 29547087 -197977491 + L1PA16 LINE L1 5981 6157 -9 32 43 0 0 chr3 29547088 29547134 -197977444 + AT_rich Low_complexity Low_complexity 1 46 0 736 284 206 36 chr3 29547551 29548025 -197976553 + MLT1G1 LTR MaLR 1 592 -3 302 317 0 9 chr3 29548028 29548151 -197976427 + MLT1G1-int LTR MaLR 1 102 -1269 240 320 39 0 chr3 29548297 29548375 -197976203 + MLT1G1-int LTR MaLR 438 518 -853 790 285 75 60 chr3 29549411 29550040 -197974538 + L1ME4a LINE L1 5327 5964 -157 7500 24 1 1 chr3 29550717 29551652 -197972926 + L1PA3 LINE L1 5269 6203 0 359 319 52 37 chr3 29552623 29552758 -197971820 - MIR3 SINE MIR -70 138 2 585 329 70 4 chr3 29552968 29553211 -197971367 - MIR SINE MIR 0 262 4 26 0 0 0 chr3 29553727 29553753 -197970825 + AT_rich Low_complexity Low_complexity 1 26 0 367 322 66 25 chr3 29553990 29554111 -197970467 + L2 LINE L2 3133 3258 -14 25 0 0 0 chr3 29554671 29554696 -197969882 + AT_rich Low_complexity Low_complexity 1 25 0 275 125 107 0 chr3 29556106 29556162 -197968416 - L1MC4 LINE L1 -1366 6676 6615 183 156 0 0 chr3 29556163 29556195 -197968383 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2131 194 78 13 chr3 29556196 29556644 -197967934 - MLT2B1 LTR ERVL -41 479 3 264 376 0 10 chr3 29556850 29556951 -197967627 - MER5B DNA MER1_type -78 100 1 277 305 53 0 chr3 29557015 29557110 -197967468 - MIR SINE MIR -48 214 115 2353 100 6 0 chr3 29557791 29558102 -197966476 - AluSp SINE Alu 0 313 1 944 232 67 14 chr3 29558616 29558944 -197965634 + MSTD LTR MaLR 5 396 0 434 316 33 52 chr3 29559352 29559510 -197965068 + MIR SINE MIR 52 207 -55 2084 141 3 0 chr3 29559510 29559807 -197964771 + AluSx SINE Alu 1 298 -14 434 316 33 52 chr3 29559807 29559860 -197964718 + MIR SINE MIR 207 259 -3 856 52 0 9 chr3 29560379 29560494 -197964084 - L1P LINE L1 -3602 2544 2431 7504 26 5 0 chr3 29560494 29561570 -197963008 + L1PA4 LINE L1 5078 6144 -11 366 235 139 53 chr3 29561703 29561890 -197962688 + L2 LINE L2 2272 2474 -840 369 169 60 24 chr3 29561895 29561978 -197962600 - L2 LINE L2 -47 3266 3181 2167 102 0 40 chr3 29562170 29562495 -197962083 - AluSx SINE Alu 0 312 1 1947 123 11 3 chr3 29563166 29563450 -197961128 - AluSx SINE Alu -26 286 1 712 196 21 28 chr3 29563450 29563593 -197960985 - AluJo SINE Alu -170 142 1 1189 165 5 14 chr3 29563612 29563830 -197960748 - AluJb SINE Alu -18 294 79 357 239 125 11 chr3 29564386 29564562 -197960016 + L1M4 LINE L1 4951 5146 -1000 2201 94 0 0 chr3 29564650 29564925 -197959653 + AluSx SINE Alu 21 295 -17 2250 110 3 3 chr3 29564939 29565248 -197959330 + AluSx SINE Alu 1 309 -3 1802 175 7 0 chr3 29565318 29565609 -197958969 + AluJb SINE Alu 1 293 -19 426 264 88 55 chr3 29566424 29566697 -197957881 - L1MEc LINE L1 -4179 2217 1936 2162 101 27 3 chr3 29566699 29566995 -197957583 - AluSc SINE Alu -6 303 1 1216 117 0 0 chr3 29566997 29567168 -197957410 - AluSg/x SINE Alu -5 307 137 1478 112 0 0 chr3 29567354 29567551 -197957027 - AluSg/x SINE Alu -23 289 93 183 80 0 0 chr3 29567551 29567576 -197957002 + (A)n Simple_repeat Simple_repeat 1 25 0 2093 123 0 13 chr3 29568403 29568713 -197955865 + AluSq SINE Alu 1 306 -7 873 298 84 29 chr3 29570042 29570233 -197954345 + MARNA DNA Mariner 14 193 -393 722 214 0 0 chr3 29570233 29570364 -197954214 - FLAM_A SINE Alu -2 131 1 873 298 84 29 chr3 29570364 29570695 -197953883 + MARNA DNA Mariner 193 565 -21 257 303 66 29 chr3 29571129 29571248 -197953330 - MIR SINE MIR -78 130 9 2376 89 3 0 chr3 29572803 29573105 -197951473 + AluSx SINE Alu 1 303 -9 11862 13 1 0 chr3 29574052 29575923 -197948655 - L1HS LINE L1 -277 5878 4006 344 191 34 62 chr3 29576031 29576209 -197948369 + (GGGTG)n Simple_repeat Simple_repeat 4 176 0 264 30 0 0 chr3 29576440 29576473 -197948105 + (T)n Simple_repeat Simple_repeat 1 33 0 256 222 144 22 chr3 29578256 29578346 -197946232 + MIR3 SINE MIR 55 155 -53 333 155 33 5 chr3 29579025 29579097 -197945481 + AluY SINE Alu 35 95 -206 1138 296 77 25 chr3 29579719 29580016 -197944562 - LTR16C LTR ERVL 0 491 168 1244 211 97 57 chr3 29580016 29580367 -197944211 + MLT1A1 LTR MaLR 1 365 0 1138 296 77 25 chr3 29580367 29580461 -197944117 - LTR16C LTR ERVL -323 168 80 23 33 0 0 chr3 29581432 29581462 -197943116 + AT_rich Low_complexity Low_complexity 1 30 0 423 340 96 2 chr3 29582171 29582373 -197942205 - MIR SINE MIR -17 245 23 23 105 0 0 chr3 29582860 29582946 -197941632 + AT_rich Low_complexity Low_complexity 1 86 0 235 315 0 0 chr3 29583740 29583794 -197940784 + MER91 DNA MER1_type 1 54 -86 1005 204 120 63 chr3 29585131 29585415 -197939163 - AluJo SINE Alu -1 301 2 1622 215 54 5 chr3 29585459 29585827 -197938751 - MLT1B LTR MaLR -4 386 1 215 360 33 67 chr3 29585853 29586003 -197938575 + MIR SINE MIR 31 175 -87 25 0 0 0 chr3 29586956 29586981 -197937597 + AT_rich Low_complexity Low_complexity 1 25 0 2851 176 62 0 chr3 29587023 29587571 -197937007 + LTR38B LTR ERV1 28 608 -3 880 294 69 62 chr3 29587775 29588411 -197936167 - L2 LINE L2 -22 3291 2657 180 200 0 0 chr3 29588457 29588497 -197936081 + GA-rich Low_complexity Low_complexity 3 42 0 264 122 0 41 chr3 29588608 29588657 -197935921 - L1MA2 LINE L1 0 6305 6259 7445 164 29 25 chr3 29588679 29588860 -197935718 - L1MA3 LINE L1 -23 7701 7522 1987 118 3 10 chr3 29588860 29589149 -197935429 + AluSq SINE Alu 1 287 -26 243 79 0 0 chr3 29589149 29589187 -197935391 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7445 164 29 25 chr3 29589187 29589205 -197935373 - L1MA3 LINE L1 -202 7522 7506 369 0 0 0 chr3 29589205 29589246 -197935332 + (TC)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr3 29589245 29589272 -197935306 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 7445 164 29 25 chr3 29589246 29591554 -197933024 - L1MA3 LINE L1 -218 7506 5208 3304 202 53 20 chr3 29591556 29592634 -197931944 - L1MA3 LINE L1 -3071 4494 3383 645 219 7 13 chr3 29592949 29593104 -197931474 + MLT2D LTR ERVL 94 247 -167 249 170 21 0 chr3 29593108 29593155 -197931423 + MLT2D LTR ERVL 367 414 0 746 220 20 0 chr3 29595092 29595242 -197929336 + MER5A DNA MER1_type 37 189 0 452 238 210 0 chr3 29595483 29595626 -197928952 - MER5A DNA MER1_type -7 182 10 299 331 67 61 chr3 29596863 29597087 -197927491 + MIR SINE MIR 9 238 -24 670 347 92 9 chr3 29597127 29597473 -197927105 - MLT1K LTR MaLR -206 382 8 204 191 0 149 chr3 29598056 29598150 -197926428 - L2 LINE L2 -85 3228 3149 200 240 67 53 chr3 29599278 29599353 -197925225 + MIR SINE MIR 47 122 -140 287 77 0 0 chr3 29599374 29599413 -197925165 - MADE1 DNA Mariner 0 80 42 261 0 0 0 chr3 29599633 29599662 -197924916 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 29599949 29599970 -197924608 + AT_rich Low_complexity Low_complexity 1 21 0 1755 162 19 16 chr3 29600072 29600381 -197924197 - AluSx SINE Alu -2 310 1 1997 78 0 7 chr3 29601299 29601569 -197923009 + AluY SINE Alu 11 278 -33 396 0 0 0 chr3 29601569 29601613 -197922965 + (CA)n Simple_repeat Simple_repeat 1 44 0 435 326 87 9 chr3 29601700 29601930 -197922648 - LTR33 LTR ERVL -82 439 192 271 292 23 18 chr3 29602801 29602910 -197921668 + MIR SINE MIR 72 180 -66 762 244 80 36 chr3 29603950 29604224 -197920354 - L1MD2 LINE L1 -13 6346 6061 2030 209 91 56 chr3 29604257 29604904 -197919674 - L1MD2 LINE L1 -363 5996 5327 * 19061 32 17 0 chr3 29604895 29607928 -197916650 - L1PA5 LINE L1 0 6154 3064 18254 41 55 3 chr3 29607926 29610262 -197914316 + L1P LINE L1 331 2786 -3360 * 23 33 0 0 chr3 29610335 29610365 -197914213 + AT_rich Low_complexity Low_complexity 1 30 0 798 184 62 6 chr3 29610514 29610693 -197913885 + L1 LINE L1 3373 3561 -2585 231 61 0 0 chr3 29610733 29610766 -197913812 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1343 226 14 0 chr3 29610766 29611041 -197913537 - AluJo SINE Alu -33 279 1 2641 181 76 12 chr3 29611044 29611624 -197912954 + L1 LINE L1 3554 4170 -1976 2333 104 0 0 chr3 29612293 29612602 -197911976 - AluSc SINE Alu 0 309 1 2653 161 46 2 chr3 29612911 29613409 -197911169 + L1MC1 LINE L1 5814 6333 0 27 0 0 0 chr3 29614406 29614433 -197910145 + AT_rich Low_complexity Low_complexity 1 27 0 418 302 50 35 chr3 29614509 29614711 -197909867 + MIR SINE MIR 18 222 -40 2887 188 102 14 chr3 29615110 29615749 -197908829 + LTR28 LTR ERV1 1 695 -325 638 301 77 10 chr3 29617318 29617527 -197907051 - MIR SINE MIR -32 230 8 884 209 0 0 chr3 29617873 29618026 -197906552 - AluJb SINE Alu -15 297 145 222 330 22 11 chr3 29618263 29618354 -197906224 - L2 LINE L2 -9 3263 3172 23 0 0 0 chr3 29618785 29618808 -197905770 + AT_rich Low_complexity Low_complexity 1 23 0 2451 65 0 3 chr3 29619672 29619978 -197904600 + AluY SINE Alu 3 307 -4 3201 230 85 10 chr3 29620728 29621555 -197903023 + L1MC3 LINE L1 6890 7778 -7 253 227 0 40 chr3 29621579 29621654 -197902924 - MER50-int LTR ERV1 -6244 961 890 282 29 0 0 chr3 29622093 29622128 -197902450 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 225 36 18 chr3 29623785 29623896 -197900682 + (TA)n Simple_repeat Simple_repeat 2 114 0 36 23 0 0 chr3 29623977 29624020 -197900558 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr3 29625043 29625080 -197899498 + AT_rich Low_complexity Low_complexity 1 37 0 241 331 73 24 chr3 29625514 29625638 -197898940 - L2 LINE L2 -6 3307 3178 10942 37 4 4 chr3 29625659 29627780 -197896798 - L1PA4 LINE L1 -2 6153 4035 8851 44 2 0 chr3 29627780 29628909 -197895669 + L1PA4 LINE L1 2907 4037 -2109 975 261 78 99 chr3 29629365 29629490 -197895088 + MLT1E LTR MaLR 2 128 -465 2247 72 0 7 chr3 29629490 29629795 -197894783 + AluY SINE Alu 1 303 -8 975 261 78 99 chr3 29629795 29630274 -197894304 + MLT1E LTR MaLR 128 593 0 368 289 109 0 chr3 29630512 29630640 -197893938 - MER117 DNA MER1_type -50 147 6 442 292 35 55 chr3 29631086 29631288 -197893290 + L3b LINE CR1 1191 1388 -195 1948 73 0 35 chr3 29631432 29631691 -197892887 - AluSg SINE Alu -20 290 41 332 242 88 0 chr3 29632198 29632308 -197892270 + MIR3 SINE MIR 61 180 -28 1752 122 90 4 chr3 29632619 29632898 -197891680 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr3 29633004 29633033 -197891545 + AT_rich Low_complexity Low_complexity 1 29 0 2150 104 10 0 chr3 29633549 29633837 -197890741 - AluSg SINE Alu -15 295 5 540 173 245 7 chr3 29634995 29635134 -197889444 - MIR SINE MIR -67 195 24 189 74 0 0 chr3 29635553 29635580 -197888998 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 64 0 0 chr3 29635738 29635785 -197888793 + AT_rich Low_complexity Low_complexity 1 47 0 394 162 120 68 chr3 29635955 29636072 -197888506 + MLT1D LTR MaLR 1 123 -382 2336 75 0 3 chr3 29636530 29636825 -197887753 - AluY SINE Alu -17 294 1 630 223 63 23 chr3 29637272 29637447 -197887131 + MER105 DNA DNA 6 187 -17 21 0 0 0 chr3 29639148 29639169 -197885409 + AT_rich Low_complexity Low_complexity 1 21 0 2195 94 14 0 chr3 29639284 29639581 -197884997 + AluSp SINE Alu 1 301 -12 1075 216 34 41 chr3 29640419 29640823 -197883755 + MLT1F LTR MaLR 6 499 -68 277 228 35 0 chr3 29640825 29640882 -197883696 + MER34 LTR ERV1 484 542 0 275 288 115 0 chr3 29641559 29641698 -197882880 + MER103 DNA DNA 12 166 0 342 318 108 58 chr3 29641751 29642151 -197882427 - L1MC/D LINE L1 -2045 5763 5344 27 0 0 0 chr3 29642264 29642291 -197882287 + AT_rich Low_complexity Low_complexity 1 27 0 2089 239 72 61 chr3 29642604 29643412 -197881166 - L1ME1 LINE L1 -26 6376 5560 445 221 54 20 chr3 29643505 29643654 -197880924 - L1ME1 LINE L1 -997 5385 5232 3247 97 11 0 chr3 29643801 29644263 -197880315 + L1PA13 LINE L1 5696 6162 -1 234 277 69 0 chr3 29644331 29644461 -197880117 - L1ME1 LINE L1 -3795 2587 2449 523 310 133 18 chr3 29644496 29645282 -197879296 - L1ME1 LINE L1 -4153 2410 1374 266 311 88 39 chr3 29645257 29645563 -197879015 - L1ME1 LINE L1 -4862 1510 1190 * 504 269 169 15 chr3 29647997 29648198 -197876380 - MIR SINE MIR -19 243 12 8090 79 5 3 chr3 29648299 29649368 -197875210 - MER11C LTR ERVK 0 1071 1 195 42 0 0 chr3 29649875 29649899 -197874679 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr3 29650189 29650215 -197874363 + AT_rich Low_complexity Low_complexity 1 26 0 20005 174 42 17 chr3 29650541 29655273 -197869305 + L1MA3 LINE L1 1 4851 -2714 5468 156 43 24 chr3 29655285 29656792 -197867786 + L1MA3 LINE L1 6190 7724 0 29 0 0 0 chr3 29656792 29656821 -197867757 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 29659266 29659295 -197865283 + AT_rich Low_complexity Low_complexity 1 29 0 181 239 0 22 chr3 29659298 29659344 -197865234 + L2 LINE L2 3269 3313 0 25 31 0 0 chr3 29660801 29660833 -197863745 + AT_rich Low_complexity Low_complexity 1 32 0 693 222 69 35 chr3 29661277 29661480 -197863098 - MER58C DNA MER1_type -1 214 5 7438 93 7 19 chr3 29662126 29663196 -197861382 + MER11C LTR ERVK 1 1057 -14 5179 107 7 17 chr3 29663257 29664031 -197860547 + MER11C LTR ERVK 292 1057 -14 21 57 0 0 chr3 29664336 29664371 -197860207 + AT_rich Low_complexity Low_complexity 1 35 0 822 277 141 15 chr3 29664753 29665143 -197859435 + MLT1J1 LTR MaLR 1 439 -7 929 243 40 16 chr3 29665282 29665529 -197859049 + MER74B LTR ERVL 370 622 0 750 218 21 0 chr3 29665529 29665670 -197858908 - MLT1C LTR MaLR -323 144 1 527 303 168 8 chr3 29666132 29666489 -197858089 - L1M4 LINE L1 -1453 4693 4280 229 151 38 0 chr3 29666524 29666577 -197858001 + L1MC4 LINE L1 6648 6702 -1340 237 322 35 9 chr3 29666960 29667075 -197857503 - L1MC/D LINE L1 -1921 5887 5770 1110 274 40 3 chr3 29667645 29667970 -197856608 - MER46C DNA MER2_type -1 337 1 1598 191 3 28 chr3 29668125 29668444 -197856134 - AluJo SINE Alu 0 312 2 203 152 0 0 chr3 29669182 29669215 -197855363 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 281 339 8 0 chr3 29669196 29669317 -197855261 + (TA)n Simple_repeat Simple_repeat 1 122 0 374 174 122 20 chr3 29669410 29669508 -197855070 - L1MC5 LINE L1 -109 7852 7745 1904 129 46 0 chr3 29670060 29670340 -197854238 - AluSx SINE Alu -19 293 1 425 259 69 23 chr3 29670671 29670802 -197853776 + MIR SINE MIR 76 212 -50 407 300 67 44 chr3 29671442 29671622 -197852956 + MIR SINE MIR 9 192 -70 184 316 13 0 chr3 29671675 29671751 -197852827 - MIR SINE MIR 0 262 186 340 266 56 63 chr3 29671944 29672087 -197852491 + L2 LINE L2 3159 3300 -13 1359 231 26 102 chr3 29673316 29673844 -197850734 + LTR16C LTR ERVL 1 488 -3 16451 193 60 22 chr3 29674274 29674437 -197850141 - L1M1 LINE L1 -3994 3571 3416 2315 119 0 0 chr3 29674437 29674749 -197849829 - AluSx SINE Alu 0 312 1 16451 193 60 22 chr3 29674749 29678014 -197846564 - L1M1 LINE L1 -4149 3416 11 225 326 44 37 chr3 29678030 29678165 -197846413 - L2 LINE L2 -995 2319 2184 2278 294 159 25 chr3 29678187 29679213 -197845365 - L2 LINE L2 -1096 2218 1029 1514 237 46 3 chr3 29679213 29679563 -197845015 + MLT1A1 LTR MaLR 1 365 0 2278 294 159 25 chr3 29679563 29679652 -197844926 - L2 LINE L2 -2285 1029 953 219 319 0 0 chr3 29680098 29680167 -197844411 + MIR3 SINE MIR 137 205 -3 219 309 0 0 chr3 29680495 29680550 -197844028 + GA-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr3 29680691 29680717 -197843861 + AT_rich Low_complexity Low_complexity 1 26 0 443 294 0 0 chr3 29680742 29680868 -197843710 + L1MD2 LINE L1 56 181 -6359 1276 253 119 6 chr3 29681089 29681732 -197842846 + L1MD2 LINE L1 2423 3145 -3395 1122 239 34 34 chr3 29681734 29682075 -197842503 - MSTD LTR MaLR 0 396 29 226 273 9 18 chr3 29682088 29682198 -197842380 + L1MD2 LINE L1 3144 3252 -3288 2066 285 56 29 chr3 29682203 29683211 -197841367 + L1MD2 LINE L1 4487 5537 -1003 1961 141 3 17 chr3 29683211 29683509 -197841069 + AluSx SINE Alu 1 294 -18 2066 285 56 29 chr3 29683509 29683758 -197840820 + L1MD2 LINE L1 5537 5778 -762 2386 170 29 0 chr3 29683759 29684201 -197840377 + L1MC2 LINE L1 5707 6161 -183 280 219 73 0 chr3 29684225 29684307 -197840271 + L1MC2 LINE L1 6246 6333 -11 * 15317 35 20 0 chr3 29684305 29686888 -197837690 + L1PA5 LINE L1 3514 6154 0 1989 210 91 47 chr3 29686932 29687526 -197837052 + L1MD2 LINE L1 5771 6390 -246 745 244 80 36 chr3 29687559 29687833 -197836745 + L1MD2 LINE L1 6455 6740 -13 268 265 32 28 chr3 29688872 29688981 -197835597 - MIR SINE MIR -66 142 72 441 326 87 9 chr3 29689852 29690082 -197834496 + LTR33 LTR ERVL 192 439 -82 396 0 0 0 chr3 29690169 29690213 -197834365 + (TG)n Simple_repeat Simple_repeat 1 44 0 2037 78 0 7 chr3 29690213 29690483 -197834095 - AluY SINE Alu -33 278 11 1779 162 19 16 chr3 29691401 29691710 -197832868 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 29691812 29691833 -197832745 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 29692120 29692149 -197832429 + (TG)n Simple_repeat Simple_repeat 2 30 0 286 77 0 0 chr3 29692369 29692408 -197832170 + MADE1 DNA Mariner 42 80 0 200 240 67 53 chr3 29692429 29692504 -197832074 - MIR SINE MIR -140 122 47 199 191 0 149 chr3 29693632 29693726 -197830852 + L2 LINE L2 3149 3228 -85 678 347 92 9 chr3 29694309 29694655 -197829923 + MLT1K LTR MaLR 8 382 -206 297 331 67 61 chr3 29694695 29694919 -197829659 - MIR SINE MIR -24 238 9 461 238 210 0 chr3 29696156 29696299 -197828279 + MER5A DNA MER1_type 10 182 -7 746 220 20 0 chr3 29696540 29696690 -197827888 - MER5A DNA MER1_type 0 189 37 249 170 21 0 chr3 29698627 29698674 -197825904 - MLT2D LTR ERVL 0 414 367 967 202 79 9 chr3 29698678 29698906 -197825672 - MLT2D LTR ERVL -167 247 4 2080 143 14 6 chr3 29698962 29699318 -197825260 - L1PA13 LINE L1 -5 6158 5800 2485 191 39 4 chr3 29699461 29699949 -197824629 - MLT1D LTR MaLR 0 505 1 337 321 28 0 chr3 29700011 29700120 -197824458 - MER63A DNA MER1_type 0 210 99 585 208 13 82 chr3 29700492 29700567 -197824011 + MER45A DNA AcHobo 28 88 -1493 1963 125 7 0 chr3 29700567 29700847 -197823731 - AluSx SINE Alu -5 307 26 585 208 13 82 chr3 29700847 29700930 -197823648 + MER45A DNA AcHobo 88 175 -3 570 147 0 0 chr3 29702210 29702312 -197822266 + L1MA4 LINE L1 6197 6298 -2 540 368 36 4 chr3 29704205 29704455 -197820123 + MIR SINE MIR 5 262 0 240 35 0 0 chr3 29705773 29705802 -197818776 + (CA)n Simple_repeat Simple_repeat 2 30 0 205 265 20 0 chr3 29705980 29706029 -197818549 + MIR SINE MIR 56 105 -157 1254 145 185 65 chr3 29707016 29707341 -197817237 + THE1B LTR MaLR 1 364 0 22 56 0 0 chr3 29707505 29707541 -197817037 + AT_rich Low_complexity Low_complexity 1 36 0 243 358 67 8 chr3 29709055 29709175 -197815403 + MIR SINE MIR 94 220 -42 1396 188 58 136 chr3 29709317 29709958 -197814620 + LTR49 LTR ERV1 1 584 -11 691 272 103 13 chr3 29709982 29710298 -197814280 - LTR16A LTR ERVL 0 491 105 954 120 0 0 chr3 29710719 29710852 -197813726 + AluSq/x SINE Alu 2 134 -179 2286 98 3 0 chr3 29710853 29711150 -197813428 + AluSg SINE Alu 2 299 -11 1000 200 73 23 chr3 29711151 29711411 -197813167 + L1MB7 LINE L1 5902 6174 -10 1608 181 45 0 chr3 29711427 29711715 -197812863 + AluSx SINE Alu 2 302 -10 395 156 92 0 chr3 29712049 29712158 -197812420 + AluJo SINE Alu 15 133 -169 2105 108 13 10 chr3 29712213 29712519 -197812059 + AluSg1 SINE Alu 1 307 -2 1148 121 0 17 chr3 29712528 29712702 -197811876 + AluJo SINE Alu 130 300 -12 2334 78 0 3 chr3 29712851 29713145 -197811433 + AluSg1 SINE Alu 1 293 -16 2215 60 46 23 chr3 29713147 29713449 -197811129 + AluY SINE Alu 1 309 -2 384 265 94 0 chr3 29715701 29715818 -197808760 + MER5A DNA MER1_type 9 136 -53 1823 199 50 11 chr3 29715917 29716279 -197808299 + MER21A LTR ERV1 26 401 -530 2492 176 25 8 chr3 29716279 29716757 -197807821 + MER66B LTR ERV1 1 486 0 2336 231 91 9 chr3 29716762 29717313 -197807265 + MER66B-int LTR ERV1 8 603 -6073 2131 168 40 33 chr3 29717313 29717860 -197806718 + MLT2A2 LTR ERVL 1 554 0 1970 177 141 11 chr3 29717860 29718300 -197806278 + MER66B-int LTR ERV1 599 1095 -5581 734 269 6 0 chr3 29718398 29718554 -197806024 + MER66-int LTR ERV1 2946 3102 -3574 4825 189 57 16 chr3 29718649 29719570 -197805008 + MER66-int LTR ERV1 1212 2169 -4507 4277 212 26 21 chr3 29719558 29720417 -197804161 + MER66-int LTR ERV1 2336 3198 -3478 * 2435 147 50 5 chr3 29720437 29720839 -197803739 + MSTA LTR MaLR 1 420 -8 2962 68 12 10 chr3 29721100 29721500 -197803078 - L1PA7 LINE L1 0 6154 5754 1068 228 61 29 chr3 29721951 29722293 -197802285 + L1ME2 LINE L1 5803 6155 -9 197 314 0 0 chr3 29722364 29722415 -197802163 + L2 LINE L2 1851 1901 -1413 254 358 28 0 chr3 29724446 29724555 -197800023 + L1MC/D LINE L1 5465 5576 -2232 21 0 0 0 chr3 29724555 29724576 -197800002 + AT_rich Low_complexity Low_complexity 1 21 0 377 259 68 41 chr3 29724631 29724778 -197799800 + L1MC/D LINE L1 5589 5739 -382 215 225 14 0 chr3 29724904 29724975 -197799603 + (TA)n Simple_repeat Simple_repeat 2 73 0 766 248 0 0 chr3 29725050 29725203 -197799375 - FRAM SINE Alu -16 160 8 4060 205 61 18 chr3 29725265 29726366 -197798212 - L1MB7 LINE L1 -18 6166 4964 1969 132 0 3 chr3 29726366 29726653 -197797925 - AluSc SINE Alu -21 288 3 4060 205 61 18 chr3 29726653 29727399 -197797179 - L1MB7 LINE L1 -1220 4964 4252 1290 201 19 87 chr3 29727456 29727765 -197796813 - AluJo SINE Alu -22 290 3 865 273 18 0 chr3 29727888 29728108 -197796470 + MER58A DNA MER1_type 1 224 0 21 57 0 0 chr3 29728357 29728392 -197796186 + AT_rich Low_complexity Low_complexity 1 35 0 1952 151 3 19 chr3 29728610 29728921 -197795657 + AluJb SINE Alu 3 308 -4 2241 37 0 0 chr3 29730684 29730956 -197793622 + L1PA2 LINE L1 5884 6155 0 1918 215 56 16 chr3 29731081 29731565 -197793013 + L1MD3 LINE L1 7425 7927 -68 1381 195 41 11 chr3 29731628 29732080 -197792498 + L1M4 LINE L1 5016 5482 -702 310 333 184 19 chr3 29732199 29732629 -197791949 - L2 LINE L2 -556 2758 2258 216 0 0 0 chr3 29733082 29733106 -197791472 + (A)n Simple_repeat Simple_repeat 1 24 0 1678 109 97 12 chr3 29736449 29736744 -197787834 - AluSc SINE Alu 0 317 1 364 280 30 38 chr3 29737173 29737305 -197787273 - L2 LINE L2 -1 3271 3141 313 294 63 8 chr3 29737404 29737530 -197787048 + MIR SINE MIR 32 164 -98 826 262 105 94 chr3 29737537 29738110 -197786468 + MLT1G LTR MaLR 10 588 -2 654 226 67 12 chr3 29739401 29739565 -197785013 - MER45A DNA AcHobo -5 173 1 769 155 139 48 chr3 29740366 29740553 -197784025 - MER20 DNA MER1_type 0 219 16 575 331 40 16 chr3 29740603 29740854 -197783724 + MIR SINE MIR 1 257 -5 246 315 0 0 chr3 29741384 29741457 -197783121 - MIR SINE MIR -6 256 184 21 0 0 0 chr3 29743158 29743179 -197781399 + AT_rich Low_complexity Low_complexity 1 21 0 1092 101 132 0 chr3 29743393 29743582 -197780996 - MER44D DNA MER2_type 0 605 337 368 59 59 0 chr3 29743635 29743686 -197780892 + Tigger7 DNA MER2_type 278 331 -2156 1213 220 11 34 chr3 29743719 29743987 -197780591 - Tigger7 DNA MER2_type -2224 263 2 228 67 0 0 chr3 29744016 29744046 -197780532 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 2386 148 11 44 chr3 29744670 29745129 -197779449 + MLT2A1 LTR ERVL 1 444 0 4263 213 108 31 chr3 29747432 29748740 -197775838 - Charlie1a DNA MER1_type 0 1455 48 2319 65 0 28 chr3 29749037 29749358 -197775220 + L1PA8 LINE L1 5858 6169 -3 258 32 0 0 chr3 29749922 29749953 -197774625 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 927 278 92 41 chr3 29750335 29750824 -197773754 + LTR33 LTR ERVL 6 519 -2 26 30 0 0 chr3 29750862 29750895 -197773683 + AT_rich Low_complexity Low_complexity 1 33 0 242 204 31 122 chr3 29751493 29751591 -197772987 + MIR SINE MIR 100 188 -74 631 320 57 16 chr3 29751670 29752042 -197772536 + L2 LINE L2 2365 2751 -563 998 311 87 28 chr3 29752078 29752503 -197772075 + L2 LINE L2 2864 3313 0 920 195 33 14 chr3 29752540 29752755 -197771823 + MER20 DNA MER1_type 1 219 0 182 207 0 103 chr3 29753521 29753579 -197770999 + L2 LINE L2 3262 3313 0 576 285 111 19 chr3 29753839 29754109 -197770469 - L2 LINE L2 -5 3308 3014 404 352 93 30 chr3 29754558 29754794 -197769784 - MIR SINE MIR -6 256 6 21 36 0 0 chr3 29757233 29757261 -197767317 + AT_rich Low_complexity Low_complexity 1 28 0 632 281 99 5 chr3 29757261 29757453 -197767125 - MER58A DNA MER1_type -1 223 14 510 310 83 14 chr3 29757596 29757812 -197766766 + MIR SINE MIR 31 261 -1 198 103 0 0 chr3 29757900 29757929 -197766649 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 205 365 111 0 chr3 29757946 29758072 -197766506 + L2 LINE L2 3132 3271 -1 209 262 33 0 chr3 29759916 29759977 -197764601 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 258 363 66 25 chr3 29760306 29760583 -197763995 + L2 LINE L2 2757 3050 -222 1627 243 133 0 chr3 29760660 29761059 -197763519 + Tigger5 DNA MER2_type 1 452 -1871 292 191 95 0 chr3 29761063 29761126 -197763452 + Tigger5 DNA MER2_type 2240 2308 -15 230 254 0 16 chr3 29761866 29761929 -197762649 + A-rich Low_complexity Low_complexity 2 63 0 669 255 98 25 chr3 29762192 29762396 -197762182 + MER20 DNA MER1_type 1 219 0 744 169 174 23 chr3 29762407 29762626 -197761952 - LTR37A LTR ERV1 0 426 175 2214 112 0 0 chr3 29764601 29764896 -197759682 + AluSx SINE Alu 5 299 -13 29 47 0 0 chr3 29764943 29764986 -197759592 + AT_rich Low_complexity Low_complexity 1 43 0 316 350 88 81 chr3 29766376 29766696 -197757882 - L2 LINE L2 -56 3216 2895 181 336 62 76 chr3 29766751 29766962 -197757616 + L2 LINE L2 3020 3227 -45 2497 125 0 0 chr3 29767909 29768276 -197756302 - L1PB1 LINE L1 -3 6148 5782 1014 157 0 0 chr3 29768298 29768476 -197756102 + (TA)n Simple_repeat Simple_repeat 2 179 0 11097 188 33 10 chr3 29768509 29771554 -197753024 - L1PB1 LINE L1 -363 5788 2682 3093 132 91 1 chr3 29771553 29772249 -197752329 + L1PB1 LINE L1 2656 3415 -3447 * 657 306 34 17 chr3 29772402 29772637 -197751941 + MIR SINE MIR 22 260 -2 2097 114 13 7 chr3 29773031 29773337 -197751241 - AluY SINE Alu 0 311 4 1462 67 0 0 chr3 29774385 29774578 -197750000 - L1PA4 LINE L1 -3 6152 5960 23 33 0 0 chr3 29775041 29775071 -197749507 + AT_rich Low_complexity Low_complexity 1 30 0 6698 268 57 15 chr3 29775143 29779065 -197745513 - L1 LINE L1 -2889 3843 2 226 250 113 24 chr3 29779568 29779692 -197744886 - L1M3d LINE L1 -5753 138 4 694 251 5 21 chr3 29779802 29779993 -197744585 - MLT1A2 LTR MaLR -183 191 4 22 0 0 0 chr3 29780239 29780261 -197744317 + AT_rich Low_complexity Low_complexity 1 22 0 352 332 48 24 chr3 29780606 29780814 -197743764 - L1M4 LINE L1 -2301 3845 3633 666 202 42 72 chr3 29782554 29782747 -197741831 + MER5A DNA MER1_type 3 189 0 272 366 31 26 chr3 29783453 29783644 -197740934 + MIR SINE MIR 23 214 -48 22 35 0 0 chr3 29784595 29784624 -197739954 + AT_rich Low_complexity Low_complexity 1 29 0 437 188 10 59 chr3 29784859 29784960 -197739618 - Zaphod DNA AcHobo -2 4029 3934 521 269 50 19 chr3 29785019 29785179 -197739399 - MLT1G1 LTR MaLR -2 593 429 355 278 35 77 chr3 29785259 29785428 -197739150 - LTR16B LTR ERVL -12 452 291 1068 189 95 10 chr3 29835943 29836253 -197688325 - MER33 DNA MER1_type 0 324 1 368 299 132 36 chr3 29836662 29836996 -197687582 - L1M4 LINE L1 -1456 4690 4325 296 265 120 0 chr3 29837198 29837315 -197687263 + MLT1J LTR MaLR 7 137 -374 330 261 32 96 chr3 29837582 29837739 -197686839 - L1MEd LINE L1 -5956 163 17 2200 118 7 0 chr3 29837872 29838176 -197686402 - AluSq SINE Alu -5 308 3 5353 152 40 13 chr3 29838551 29839583 -197684995 + L1MA8 LINE L1 5226 6285 -6 546 370 20 24 chr3 29839835 29840292 -197684286 - L1ME3A LINE L1 -208 5962 5508 2123 114 3 0 chr3 29840476 29840766 -197683812 + AluSc SINE Alu 1 291 -18 2670 16 0 7 chr3 29840787 29841091 -197683487 + AluY SINE Alu 1 302 -9 251 272 37 0 chr3 29841269 29841350 -197683228 - HAL1b LINE L1 -817 531 448 319 365 14 7 chr3 29841360 29841505 -197683073 - HAL1 LINE L1 -998 1509 1364 1275 182 83 10 chr3 29841677 29841979 -197682599 - MER33 DNA MER1_type 0 324 1 23 0 0 0 chr3 29842450 29842473 -197682105 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 29842667 29842693 -197681885 + (A)n Simple_repeat Simple_repeat 1 26 0 1877 158 0 7 chr3 29843006 29843309 -197681269 + AluSx SINE Alu 1 301 -11 368 306 56 35 chr3 29844609 29844753 -197679825 - L2 LINE L2 -25 3288 3142 1055 236 122 46 chr3 29844811 29845205 -197679373 + LTR16A LTR ERVL 25 448 -2 388 360 63 13 chr3 29845540 29845779 -197678799 - MIR SINE MIR -1 261 11 21 36 0 0 chr3 29845824 29845852 -197678726 + AT_rich Low_complexity Low_complexity 1 28 0 286 400 17 22 chr3 29847172 29847352 -197677226 - MER115 DNA AcHobo -498 195 17 216 158 0 0 chr3 29848134 29848172 -197676406 + (TG)n Simple_repeat Simple_repeat 2 39 0 403 182 48 0 chr3 29848186 29848351 -197676227 + (TA)n Simple_repeat Simple_repeat 1 173 0 4751 143 54 23 chr3 29849274 29850201 -197674377 + L1 LINE L1 4167 5122 -1024 1405 176 96 53 chr3 29850379 29850553 -197674025 + MLT1B LTR MaLR 1 166 -224 1861 118 9 60 chr3 29850553 29850868 -197673710 + AluSp SINE Alu 1 299 -14 222 37 0 0 chr3 29850868 29850895 -197673683 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1405 176 96 53 chr3 29850895 29851093 -197673485 + MLT1B LTR MaLR 165 390 0 259 292 125 25 chr3 29851280 29851400 -197673178 + L2 LINE L2 3139 3270 -2 295 329 67 18 chr3 29853076 29853240 -197671338 - MIR SINE MIR -89 173 2 369 85 0 0 chr3 29853267 29853326 -197671252 + L1MD2 LINE L1 6300 6358 -1 1358 272 160 19 chr3 29855743 29856332 -197668246 + L2 LINE L2 535 1206 -2108 483 260 81 108 chr3 29856349 29856572 -197668006 + MIR SINE MIR 46 262 0 203 205 77 0 chr3 29856702 29856780 -197667798 + (TTAAA)n Simple_repeat Simple_repeat 2 85 0 766 204 0 25 chr3 29857023 29857180 -197667398 - MER3 DNA MER1_type -56 153 1 21 36 0 0 chr3 29857189 29857217 -197667361 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 29857822 29857850 -197666728 + AT_rich Low_complexity Low_complexity 1 28 0 1525 231 25 41 chr3 29858690 29859084 -197665494 - MLT1I LTR MaLR -21 388 1 26 0 0 0 chr3 29861555 29861581 -197662997 + AT_rich Low_complexity Low_complexity 1 26 0 397 304 101 14 chr3 29863436 29863643 -197660935 + MIR SINE MIR 1 225 -37 290 299 82 13 chr3 29863714 29863955 -197660623 - L1MC/D LINE L1 -450 5671 5535 22 70 0 0 chr3 29864155 29864198 -197660380 + AT_rich Low_complexity Low_complexity 1 43 0 7470 23 6 4 chr3 29865702 29866703 -197657875 + L1PA4 LINE L1 5154 6155 0 449 270 34 39 chr3 29867048 29867226 -197657352 - MLT1K LTR MaLR -36 552 376 670 214 11 93 chr3 29867336 29867412 -197657166 - MER106B DNA MER1_type 0 236 155 2733 115 14 14 chr3 29867412 29867839 -197656739 - L1PB1 LINE L1 -1 6150 5724 670 214 11 93 chr3 29867839 29868015 -197656563 - MER106B DNA MER1_type -81 155 1 201 353 141 18 chr3 29868508 29868834 -197655744 - L2 LINE L2 -887 2427 2062 1750 200 59 122 chr3 29868950 29869665 -197654913 + LTR8A LTR ERV1 34 703 -24 421 335 79 0 chr3 29869866 29870018 -197654560 + MIR SINE MIR 30 193 -69 1174 183 173 145 chr3 29870091 29870287 -197654291 + LTR48 LTR ERV1 1 190 -454 1621 122 4 0 chr3 29870287 29870517 -197654061 + AluSp SINE Alu 5 235 -78 1174 183 173 145 chr3 29870517 29871017 -197653561 + LTR48 LTR ERV1 190 573 -71 1834 148 20 10 chr3 29871030 29871328 -197653250 + AluSx SINE Alu 1 301 -11 36 91 0 0 chr3 29872628 29872727 -197651851 + AT_rich Low_complexity Low_complexity 1 99 0 1744 254 100 60 chr3 29873277 29874220 -197650358 + Zaphod DNA AcHobo 9 988 -3043 180 0 0 0 chr3 29874464 29874484 -197650094 + (T)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr3 29874655 29874682 -197649896 + AT_rich Low_complexity Low_complexity 1 27 0 2253 86 0 3 chr3 29874964 29875255 -197649323 - AluY SINE Alu -21 290 1 349 384 87 5 chr3 29875850 29876069 -197648509 - HAL1b LINE L1 -732 616 380 26 0 0 0 chr3 29877221 29877247 -197647331 + AT_rich Low_complexity Low_complexity 1 26 0 388 305 123 17 chr3 29877297 29877533 -197647045 - MIR SINE MIR -1 261 1 363 290 127 16 chr3 29877936 29878315 -197646263 + L1M4 LINE L1 4256 4676 -1470 848 226 58 58 chr3 29878441 29878702 -197645876 + MIR SINE MIR 1 261 -1 1749 163 20 0 chr3 29879075 29879370 -197645208 + AluSx SINE Alu 4 304 -8 501 191 9 19 chr3 29880324 29880429 -197644149 - L1ME3A LINE L1 -39 6131 6028 310 316 125 7 chr3 29881588 29881740 -197642838 - L1MDb LINE L1 -3983 2604 2435 23 68 0 0 chr3 29883860 29883904 -197640674 + AT_rich Low_complexity Low_complexity 1 44 0 1956 240 74 27 chr3 29884371 29885182 -197639396 - L1MDb LINE L1 -4474 1932 1072 401 270 226 15 chr3 29885518 29885792 -197638786 - L1MEc LINE L1 -4002 2394 2063 357 256 104 24 chr3 29886005 29886169 -197638409 - HAL1 LINE L1 -828 1679 1503 244 260 44 44 chr3 29886181 29886362 -197638216 - L1MEc LINE L1 -4934 1462 1282 354 277 62 18 chr3 29886453 29886565 -197638013 - L2 LINE L2 -5 3308 3192 2363 205 114 2 chr3 29886594 29887146 -197637432 + MER90 LTR ERV1 1 614 0 28 0 0 0 chr3 29887262 29887290 -197637288 + AT_rich Low_complexity Low_complexity 1 28 0 1835 114 0 0 chr3 29888277 29888523 -197636055 - AluSx SINE Alu -66 246 1 267 308 84 28 chr3 29888893 29889000 -197635578 - L2 LINE L2 -5 3267 3155 1956 141 0 0 chr3 29889890 29890173 -197634405 + AluSx SINE Alu 5 287 -25 842 256 19 5 chr3 29890778 29890985 -197633593 + MER58A DNA MER1_type 11 220 -4 318 300 0 0 chr3 29891227 29891307 -197633271 - MER5A DNA MER1_type 0 189 110 261 0 0 0 chr3 29891579 29891608 -197632970 + (TG)n Simple_repeat Simple_repeat 1 29 0 280 256 171 16 chr3 29891631 29891760 -197632818 + MIR SINE MIR 6 154 -108 1579 134 0 109 chr3 29891802 29892122 -197632456 - AluJb SINE Alu -16 286 2 221 323 143 31 chr3 29892272 29892433 -197632145 - MER5A DNA MER1_type -9 180 2 218 95 24 0 chr3 29894066 29894108 -197630470 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 1341 275 31 23 chr3 29894846 29895235 -197629343 - MLT1I LTR MaLR 0 409 18 258 323 139 6 chr3 29895244 29895402 -197629176 + L2 LINE L2 3133 3311 -2 276 81 32 16 chr3 29896349 29896411 -197628167 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 26 0 0 0 chr3 29897813 29897839 -197626739 + AT_rich Low_complexity Low_complexity 1 26 0 271 341 81 8 chr3 29899018 29899141 -197625437 + MIR SINE MIR 16 147 -61 32 26 0 0 chr3 29899320 29899359 -197625219 + AT_rich Low_complexity Low_complexity 1 39 0 273 227 57 0 chr3 29899966 29900054 -197624524 - L1ME3A LINE L1 0 6170 6078 259 330 55 9 chr3 29900169 29900278 -197624300 - L2 LINE L2 -2 3311 3198 417 244 24 8 chr3 29901098 29901225 -197623353 - L1ME3A LINE L1 0 6170 6042 274 273 68 0 chr3 29901273 29901405 -197623173 - L1ME3A LINE L1 -219 5951 5811 4509 175 47 18 chr3 29901492 29902560 -197622018 + L1MB3 LINE L1 5072 6166 -17 26 0 0 0 chr3 29903332 29903358 -197621220 + AT_rich Low_complexity Low_complexity 1 26 0 343 279 39 8 chr3 29903597 29903726 -197620852 + L2 LINE L2 3177 3309 -4 22 70 0 0 chr3 29903792 29903835 -197620743 + AT_rich Low_complexity Low_complexity 1 43 0 1386 242 102 19 chr3 29903994 29904424 -197620154 + MLT1D LTR MaLR 40 505 0 702 282 81 8 chr3 29904445 29904679 -197619899 - MIR SINE MIR -11 251 1 1607 222 32 22 chr3 29905774 29906144 -197618434 - MLT1A2 LTR MaLR 0 374 1 277 340 41 0 chr3 29907971 29908068 -197616510 + MIR SINE MIR 76 176 -86 186 167 0 0 chr3 29909229 29909265 -197615313 + GA-rich Low_complexity Low_complexity 2 37 0 466 252 218 0 chr3 29910723 29910870 -197613708 - MER5A DNA MER1_type -2 187 9 355 261 34 0 chr3 29912511 29912599 -197611979 + MIR SINE MIR 98 188 -74 397 301 32 8 chr3 29912629 29912752 -197611826 + L2 LINE L2 3139 3264 -8 22 56 0 0 chr3 29912752 29912788 -197611790 + AT_rich Low_complexity Low_complexity 1 36 0 2758 31 0 0 chr3 29913074 29913392 -197611186 - AluYb8 SINE Alu 0 318 1 745 264 77 20 chr3 29913449 29913695 -197610883 - LTR16A LTR ERVL -6 444 185 346 167 0 0 chr3 29913942 29914002 -197610576 + MIR SINE MIR 129 188 -74 219 339 33 61 chr3 29914141 29914321 -197610257 - L2 LINE L2 -219 3053 2879 861 238 16 11 chr3 29914546 29914731 -197609847 + MER5A DNA MER1_type 3 188 -1 213 65 0 0 chr3 29915093 29915124 -197609454 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 428 154 0 13 chr3 29915538 29915616 -197608962 + MADE1 DNA Mariner 4 80 0 330 26 0 0 chr3 29915735 29915774 -197608804 + (TG)n Simple_repeat Simple_repeat 2 40 0 1005 171 11 11 chr3 29916501 29916857 -197607721 + GA-rich Low_complexity Low_complexity 1 356 0 247 239 45 34 chr3 29916938 29917026 -197607552 - MIR SINE MIR -108 154 66 803 232 27 5 chr3 29917051 29917236 -197607342 - MER5A DNA MER1_type 0 189 1 180 313 15 15 chr3 29917245 29917312 -197607266 + L2 LINE L2 3243 3309 -4 402 278 81 64 chr3 29917489 29917864 -197606714 - LTR16C LTR ERVL -48 409 13 324 0 0 0 chr3 29917946 29917982 -197606596 + (TG)n Simple_repeat Simple_repeat 2 37 0 338 205 0 0 chr3 29917982 29918060 -197606518 + MER116 DNA Mariner 1 78 -2 389 315 98 39 chr3 29918552 29918962 -197605616 - MLT1L LTR MaLR -4 611 178 344 169 0 12 chr3 29919661 29919744 -197604834 + GA-rich Low_complexity Low_complexity 2 83 0 24 0 0 0 chr3 29920202 29920226 -197604352 + AT_rich Low_complexity Low_complexity 1 24 0 5161 95 59 2 chr3 29921047 29921849 -197602729 + L1MA1 LINE L1 5451 6297 -5 203 350 206 0 chr3 29923272 29923369 -197601209 - MER91A DNA MER1_type -51 145 29 279 133 0 0 chr3 29923690 29923735 -197600843 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 1725 155 43 11 chr3 29923752 29924030 -197600548 - AluSx SINE Alu -25 287 1 803 200 54 32 chr3 29924512 29924539 -197600039 + MER5A DNA MER1_type 1 26 -163 219 69 0 0 chr3 29924539 29924568 -197600010 + (CCA)n Simple_repeat Simple_repeat 3 31 0 803 200 54 32 chr3 29924568 29924725 -197599853 + MER5A DNA MER1_type 26 189 0 2585 23 0 0 chr3 29924928 29925281 -197599297 + L1PA4 LINE L1 5852 6204 0 601 139 9 28 chr3 29925339 29925447 -197599131 + FLAM_C SINE Alu 31 136 -7 430 296 266 23 chr3 29925642 29925946 -197598632 + L3 LINE CR1 1195 1572 -5 474 291 81 17 chr3 29925977 29926149 -197598429 - MIR SINE MIR -1 261 79 547 213 41 0 chr3 29926815 29926937 -197597641 - L1MB4 LINE L1 -4 6176 6050 489 319 126 6 chr3 29927681 29927863 -197596715 - MIR3 SINE MIR -2 206 3 493 322 74 5 chr3 29928073 29928275 -197596303 + MIR SINE MIR 12 227 -35 209 364 74 12 chr3 29932247 29932409 -197592169 + L2 LINE L2 2890 3061 -211 10587 40 4 0 chr3 29932569 29934625 -197589953 - L1PA4 LINE L1 -3 6152 4089 189 276 138 52 chr3 29934658 29934774 -197589804 + L2 LINE L2 2342 2467 -847 633 316 62 32 chr3 29934841 29935211 -197589367 + LTR16B LTR ERVL 82 462 -2 4523 212 24 10 chr3 29935338 29935904 -197588674 - L1MB8 LINE L1 -5 6173 5617 2086 122 0 13 chr3 29935904 29936216 -197588362 - AluSc SINE Alu -1 308 1 4523 212 24 10 chr3 29936216 29937547 -197587031 - L1MB8 LINE L1 -561 5617 4247 191 382 113 16 chr3 29937549 29937735 -197586843 + L2 LINE L2 2605 2808 -506 345 226 0 0 chr3 29938372 29938456 -197586122 + (TA)n Simple_repeat Simple_repeat 1 84 0 2342 97 3 0 chr3 29938456 29938754 -197585824 - AluSp SINE Alu -14 299 1 195 407 68 0 chr3 29938845 29938963 -197585615 - L2 LINE L2 -220 3052 2927 305 195 305 42 chr3 29939402 29939520 -197585058 + MER5A DNA MER1_type 41 189 0 254 108 0 0 chr3 29940127 29940164 -197584414 - MADE1 DNA Mariner -43 37 1 28 29 0 0 chr3 29941097 29941132 -197583446 + AT_rich Low_complexity Low_complexity 1 35 0 1531 120 0 5 chr3 29941957 29942174 -197582404 - AluSx SINE Alu -96 216 1 377 275 126 84 chr3 29942253 29942562 -197582016 - L1MC4 LINE L1 -1043 6999 6678 198 344 53 53 chr3 29944109 29944240 -197580338 + MIR SINE MIR 26 156 -106 596 124 62 0 chr3 29944618 29944715 -197579863 - MLT1F1 LTR MaLR 0 567 465 424 229 19 9 chr3 29945280 29945385 -197579193 - LTR16A LTR ERVL -4 446 341 580 174 17 0 chr3 29945912 29946027 -197578551 - L1MA9 LINE L1 -22 6290 6174 23 0 0 0 chr3 29946056 29946079 -197578499 + AT_rich Low_complexity Low_complexity 1 23 0 29085 114 19 25 chr3 29946101 29952297 -197572281 - L1PA8 LINE L1 -226 6261 6 200 333 27 0 chr3 29952849 29952924 -197571654 - MIR SINE MIR -108 154 78 200 333 27 0 chr3 29953504 29953579 -197570999 - MIR SINE MIR -108 154 78 197 250 0 0 chr3 29954640 29954680 -197569898 + MIR SINE MIR 93 132 -130 7269 114 123 117 chr3 29954732 29956418 -197568160 + pTR5 LTR ERV1 743 2438 0 287 184 0 0 chr3 29957713 29957762 -197566816 - MER21A LTR ERV1 -870 61 13 279 79 0 0 chr3 29957770 29957808 -197566770 + (TG)n Simple_repeat Simple_repeat 2 39 0 3999 186 71 38 chr3 29957831 29958700 -197565878 + MER21A LTR ERV1 32 929 -2 1020 154 6 0 chr3 29959156 29959325 -197565253 - MER3 DNA MER1_type -82 127 5 1531 303 37 17 chr3 29960799 29961415 -197563163 - L2 LINE L2 -187 3126 2501 263 172 0 17 chr3 29962058 29962116 -197562462 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 24 32 0 0 chr3 29962135 29962166 -197562412 + AT_rich Low_complexity Low_complexity 1 31 0 1097 285 201 20 chr3 29963230 29964482 -197560096 + L1MC2 LINE L1 37 1554 -4842 4902 259 84 32 chr3 29964513 29966717 -197557861 + L1MC2 LINE L1 2364 4673 -1542 305 288 211 36 chr3 29969803 29970140 -197554438 - HAL1b LINE L1 -572 776 381 277 346 0 0 chr3 29970805 29970886 -197553692 - L2 LINE L2 -668 2646 2566 4295 14 0 0 chr3 29971765 29972257 -197552321 + L1PA2 LINE L1 5660 6151 -4 190 26 51 51 chr3 29972260 29972299 -197552279 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr3 29972554 29972577 -197552001 + (GA)n Simple_repeat Simple_repeat 2 24 0 4266 182 30 15 chr3 29972577 29973484 -197551094 + L1MC2 LINE L1 5494 6413 0 22 0 0 0 chr3 29973601 29973623 -197550955 + AT_rich Low_complexity Low_complexity 1 22 0 851 134 0 0 chr3 29974577 29974689 -197549889 + AluSq/x SINE Alu 3 114 -199 201 108 0 0 chr3 29974770 29974807 -197549771 + (A)n Simple_repeat Simple_repeat 1 37 0 1118 112 56 17 chr3 29974811 29974990 -197549588 + AluSg/x SINE Alu 126 311 -1 655 327 28 5 chr3 29975043 29975254 -197549324 - MIR SINE MIR -44 218 3 4523 161 24 4 chr3 29975620 29976492 -197548086 - L1MA8 LINE L1 -207 6084 5197 220 240 39 19 chr3 29976625 29976729 -197547849 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 618 183 142 22 chr3 29976751 29976908 -197547670 - MIR SINE MIR -62 146 5 872 221 22 36 chr3 29977470 29977692 -197546886 + MER20 DNA MER1_type 1 219 0 3344 223 93 39 chr3 29978615 29979740 -197544838 + L1MC4 LINE L1 6857 8042 0 2300 126 16 22 chr3 29979749 29980115 -197544463 + THE1B LTR MaLR 1 364 0 251 261 52 60 chr3 29980341 29980475 -197544103 + MIR SINE MIR 86 218 -44 253 312 11 26 chr3 29980858 29981044 -197543534 - MIR SINE MIR -12 250 3 420 332 65 17 chr3 29981395 29981627 -197542951 + MIR SINE MIR 18 260 -2 240 86 0 0 chr3 29982312 29982347 -197542231 + (TTA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr3 29982753 29982788 -197541790 + AT_rich Low_complexity Low_complexity 1 35 0 744 147 0 0 chr3 29982858 29982994 -197541584 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 7436 40 1 0 chr3 29983544 29984454 -197540124 - L1PA4 LINE L1 -3064 3318 2405 18696 38 0 0 chr3 29984454 29985709 -197538869 + L1PA4 LINE L1 3312 4566 -1825 2083 85 39 39 chr3 29985709 29986016 -197538562 - AluY SINE Alu -4 307 1 18696 38 0 0 chr3 29986016 29987850 -197536728 + L1PA4 LINE L1 4565 6391 0 7436 40 1 0 chr3 29987850 29987864 -197536714 - L1M4c LINE L1 -3977 2405 2393 233 250 18 0 chr3 29988045 29988101 -197536477 - Charlie8 DNA MER1_type -990 1427 1371 1847 129 43 13 chr3 29988549 29988851 -197535727 + AluJo SINE Alu 1 311 -1 323 313 23 15 chr3 29988853 29988984 -197535594 - LTR67 LTR ERVL -12 545 414 1835 290 118 12 chr3 29989021 29989870 -197534708 + HAL1 LINE L1 25 963 -1544 1996 272 142 25 chr3 29989880 29991180 -197533398 + HAL1 LINE L1 1055 2507 0 699 253 28 11 chr3 29991333 29991511 -197533067 + MER5A DNA MER1_type 1 181 -8 636 282 17 6 chr3 29991537 29991718 -197532860 - MER5A DNA MER1_type 0 189 7 1762 217 64 14 chr3 29991718 29992216 -197532362 - Charlie1b DNA MER1_type 0 523 1 2425 43 4 0 chr3 29993835 29994139 -197530439 - AluY SINE Alu 0 307 3 231 250 0 0 chr3 29995967 29996035 -197528543 + GA-rich Low_complexity Low_complexity 3 70 0 191 289 111 0 chr3 29996678 29996768 -197527810 + MER5A DNA MER1_type 7 106 -83 1739 138 91 50 chr3 29997209 29997592 -197526986 - L1MA9 LINE L1 -9 6303 5905 * 3629 171 23 18 chr3 29997589 29998822 -197525756 + L1MA9 LINE L1 4627 5869 -443 24 32 0 0 chr3 29998867 29998898 -197525680 + AT_rich Low_complexity Low_complexity 1 31 0 554 228 8 120 chr3 29999008 29999114 -197525464 - MER58C DNA MER1_type -2206 214 148 679 179 17 0 chr3 29999114 29999231 -197525347 + FLAM_A SINE Alu 1 119 -14 554 228 8 120 chr3 29999231 29999365 -197525213 - MER58C DNA MER1_type -2272 148 1 544 268 16 66 chr3 30001949 30002192 -197522386 - L2 LINE L2 -8 3305 3075 475 272 175 26 chr3 30002309 30002537 -197522041 + MIR SINE MIR 1 262 0 510 272 61 7 chr3 30003833 30003980 -197520598 + MLT1I LTR MaLR 47 201 -208 216 256 0 0 chr3 30004696 30004739 -197519839 - MIR3 SINE MIR -21 187 145 1985 137 11 0 chr3 30005103 30005388 -197519190 + AluSq SINE Alu 1 288 -25 268 279 84 63 chr3 30005473 30005703 -197518875 - MIR SINE MIR 0 262 30 245 321 28 46 chr3 30007410 30007519 -197517059 + MIR SINE MIR 156 262 0 1923 76 4 0 chr3 30007560 30007810 -197516768 + L1PA7 LINE L1 5888 6138 -16 264 421 103 0 chr3 30008207 30008440 -197516138 - L2 LINE L2 -253 3060 2804 355 240 0 56 chr3 30008766 30008891 -197515687 + L1MC5 LINE L1 7808 7925 -36 387 291 172 0 chr3 30009189 30009340 -197515238 - MER5A DNA MER1_type -6 183 7 1524 211 77 32 chr3 30009886 30010265 -197514313 - MSTD LTR MaLR 0 396 1 2402 88 0 3 chr3 30010887 30011195 -197513383 - AluSg SINE Alu -1 309 3 1960 107 3 17 chr3 30011524 30011914 -197512664 + AluSp SINE Alu 1 386 0 754 247 209 30 chr3 30011965 30012362 -197512216 + MLT1K LTR MaLR 121 588 0 1814 152 7 7 chr3 30012680 30012976 -197511602 - AluSx SINE Alu -16 296 1 23 54 0 0 chr3 30013060 30013097 -197511481 + AT_rich Low_complexity Low_complexity 1 37 0 297 243 106 25 chr3 30013562 30013760 -197510818 + MIR SINE MIR 15 225 -37 815 281 132 18 chr3 30013789 30014123 -197510455 + LTR16A LTR ERVL 65 436 -14 21 0 0 0 chr3 30014470 30014491 -197510087 + AT_rich Low_complexity Low_complexity 1 21 0 210 250 0 0 chr3 30014510 30014554 -197510024 + MIR3 SINE MIR 164 207 -1 315 343 6 40 chr3 30014838 30015013 -197509565 - MIR3 SINE MIR -26 182 14 22 35 0 0 chr3 30015598 30015627 -197508951 + AT_rich Low_complexity Low_complexity 1 29 0 462 339 21 43 chr3 30016609 30016842 -197507736 - MIR SINE MIR -32 230 3 246 32 0 0 chr3 30016995 30017026 -197507552 + (CA)n Simple_repeat Simple_repeat 2 32 0 2163 200 43 49 chr3 30017183 30017661 -197506917 + MLT2B1 LTR ERVL 1 477 -43 441 0 0 0 chr3 30017661 30017710 -197506868 + (CA)n Simple_repeat Simple_repeat 2 50 0 2163 200 43 49 chr3 30017710 30017742 -197506836 + MLT2B1 LTR ERVL 477 508 -12 498 26 40 0 chr3 30017977 30018053 -197506525 + (TG)n Simple_repeat Simple_repeat 2 80 0 684 222 0 0 chr3 30018053 30018170 -197506408 - FLAM_A SINE Alu -15 118 2 635 290 55 15 chr3 30018773 30018973 -197505605 + MIR SINE MIR 23 230 -32 248 200 32 63 chr3 30020163 30020200 -197504378 - L1MC4 LINE L1 -1298 6744 6707 315 0 0 0 chr3 30020200 30020235 -197504343 + (TG)n Simple_repeat Simple_repeat 2 36 0 248 200 32 63 chr3 30020235 30020292 -197504286 - L1MC4 LINE L1 -1335 6707 6653 10018 35 0 0 chr3 30020525 30022500 -197502078 + L1PA4 LINE L1 4173 6148 -7 23 0 0 0 chr3 30025779 30025802 -197498776 + AT_rich Low_complexity Low_complexity 1 23 0 410 36 18 0 chr3 30027141 30027197 -197497381 + (TG)n Simple_repeat Simple_repeat 2 58 0 487 256 35 74 chr3 30027592 30027795 -197496783 + HAL1 LINE L1 1 195 -2312 265 358 30 8 chr3 30028131 30028265 -197496313 - MIR3 SINE MIR -49 159 23 309 256 111 11 chr3 30029089 30029179 -197495399 + MIR SINE MIR 43 141 -67 203 364 34 0 chr3 30029343 30029431 -197495147 + MIR SINE MIR 53 143 -65 * 414 246 9 18 chr3 30029428 30029538 -197495040 - L2 LINE L2 0 3313 3205 223 282 118 27 chr3 30029542 30029652 -197494926 + MIR SINE MIR 143 262 0 296 318 99 10 chr3 30029688 30029832 -197494746 - MIR3 SINE MIR -63 145 10 627 233 83 75 chr3 30029844 30029951 -197494627 + MER97a DNA MER1_type? 1 106 -788 2799 146 34 6 chr3 30029951 30030450 -197494128 + L1MB3 LINE L1 5669 6181 -2 627 233 83 75 chr3 30030450 30030595 -197493983 + MER97a DNA MER1_type? 106 255 -639 27 0 0 0 chr3 30030638 30030665 -197493913 + AT_rich Low_complexity Low_complexity 1 27 0 1266 224 95 53 chr3 30030928 30031100 -197493478 + MER97c DNA MER1_type? 238 401 -689 2057 141 13 0 chr3 30031100 30031404 -197493174 + AluSx SINE Alu 1 308 -4 1266 224 95 53 chr3 30031404 30031542 -197493036 + MER97c DNA MER1_type? 401 532 -558 2007 133 3 7 chr3 30031542 30031835 -197492743 - AluSx SINE Alu -12 300 9 1266 224 95 53 chr3 30031835 30031956 -197492622 + MER97c DNA MER1_type? 532 688 -402 261 267 0 44 chr3 30031970 30032060 -197492518 + MER97a DNA MER1_type? 806 891 -3 1889 162 0 0 chr3 30032204 30032488 -197492090 - AluSx SINE Alu -26 286 3 812 162 14 0 chr3 30032942 30033084 -197491494 - L1MA10 LINE L1 -4 6330 6187 2278 64 0 0 chr3 30034599 30034895 -197489683 - L1PA8 LINE L1 -2 6170 5875 243 252 103 28 chr3 30035033 30035140 -197489438 - MLT1H LTR MaLR -146 403 289 1172 209 26 50 chr3 30035187 30035722 -197488856 - MLT1E2 LTR MaLR -3 623 6 254 277 72 12 chr3 30035840 30035923 -197488655 - MLT1H LTR MaLR -461 88 1 554 245 104 66 chr3 30036138 30036350 -197488228 - MIR SINE MIR 0 262 43 22 35 0 0 chr3 30036355 30036384 -197488194 + AT_rich Low_complexity Low_complexity 1 29 0 1631 243 84 2 chr3 30036847 30037312 -197487266 - MLT1D LTR MaLR 0 505 3 2030 127 43 32 chr3 30037402 30037773 -197486805 + THE1C LTR MaLR 1 375 0 357 267 67 67 chr3 30037916 30038111 -197486467 - L1ME LINE L1 -669 5452 5258 1219 252 105 6 chr3 30038222 30038583 -197485995 - MLT1J2 LTR MaLR -53 397 1 274 154 0 0 chr3 30039170 30039209 -197485369 - AluS SINE Alu -243 57 19 819 117 0 0 chr3 30039209 30039320 -197485258 - AluSq/x SINE Alu -202 111 1 482 227 9 0 chr3 30039409 30039519 -197485059 - MLT2F LTR ERVL -14 649 539 609 273 6 19 chr3 30039598 30039759 -197484819 + MLT1F LTR MaLR 1 159 -383 27 29 0 0 chr3 30039901 30039935 -197484643 + AT_rich Low_complexity Low_complexity 1 34 0 2405 66 10 10 chr3 30039981 30040286 -197484292 + AluY SINE Alu 1 305 -6 21 0 0 0 chr3 30040445 30040466 -197484112 + AT_rich Low_complexity Low_complexity 1 21 0 314 316 62 63 chr3 30040564 30041204 -197483374 - L1ME LINE L1 -1497 4649 4010 1613 147 96 34 chr3 30041204 30041557 -197483021 + THE1C LTR MaLR 1 375 0 314 316 62 63 chr3 30041557 30041774 -197482804 - L1ME LINE L1 -2136 4010 3791 1775 166 0 17 chr3 30041774 30042064 -197482514 - AluJb SINE Alu -22 290 6 314 316 62 63 chr3 30042064 30042124 -197482454 - L1ME LINE L1 -2355 3791 3732 342 250 39 0 chr3 30042324 30042428 -197482150 - Charlie1 DNA MER1_type -5 2756 2649 263 287 37 37 chr3 30042428 30042592 -197481986 - L1ME LINE L1 -3344 2802 2639 415 310 34 25 chr3 30044105 30044428 -197480150 + L1ME3A LINE L1 5034 5359 -787 631 151 43 50 chr3 30044554 30044693 -197479885 + L1MB3 LINE L1 6042 6179 -4 604 252 128 46 chr3 30044712 30044838 -197479740 + L1ME3A LINE L1 5368 5482 -688 2260 116 3 0 chr3 30044838 30045148 -197479430 + AluSp SINE Alu 1 311 -2 604 252 128 46 chr3 30045148 30045303 -197479275 + L1ME3A LINE L1 5482 5672 -498 258 227 0 0 chr3 30045348 30045423 -197479155 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 779 215 185 39 chr3 30045471 30045801 -197478777 + L1ME3A LINE L1 5675 6052 -118 561 303 23 36 chr3 30045822 30046043 -197478535 - LTR16C LTR ERVL 0 491 274 200 122 0 24 chr3 30046067 30046108 -197478470 + (GGA)n Simple_repeat Simple_repeat 1 40 0 272 277 125 0 chr3 30046286 30046398 -197478180 + L1ME3A LINE L1 6040 6165 -5 285 405 47 7 chr3 30046700 30046848 -197477730 - L2 LINE L2 -4 3268 3115 1625 171 3 35 chr3 30046877 30047163 -197477415 + AluJb SINE Alu 3 279 -33 186 143 0 0 chr3 30047163 30047198 -197477380 + (GGGAA)n Simple_repeat Simple_repeat 1 35 0 221 340 78 70 chr3 30047334 30047705 -197476873 - L2 LINE L2 -352 2962 2589 228 35 0 0 chr3 30048019 30048048 -197476530 + (CA)n Simple_repeat Simple_repeat 2 30 0 7430 32 1 4 chr3 30048367 30049419 -197475159 + L1PA4 LINE L1 5106 6154 -1 507 225 18 9 chr3 30049471 30049582 -197474996 - L2 LINE L2 -7 3306 3195 587 341 149 10 chr3 30049616 30050099 -197474479 + L2 LINE L2 2698 3261 -11 348 280 72 0 chr3 30051334 30051459 -197473119 + MIR3 SINE MIR 61 194 -14 350 266 24 77 chr3 30052876 30053045 -197471533 + L2 LINE L2 3094 3253 -60 2748 173 60 17 chr3 30053670 30054361 -197470217 + L1MB3 LINE L1 5122 5840 -343 244 284 30 76 chr3 30054383 30054580 -197469998 - L1ME LINE L1 -335 5786 5599 1360 326 118 44 chr3 30055338 30055952 -197468626 - L2 LINE L2 -243 3070 2503 12882 135 53 52 chr3 30055952 30058079 -197466499 + Tigger1 DNA MER2_type 1 2134 -284 215 31 31 0 chr3 30058079 30058111 -197466467 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 12882 135 53 52 chr3 30058111 30058397 -197466181 + Tigger1 DNA MER2_type 2134 2418 0 1360 326 118 44 chr3 30058397 30059046 -197465532 - L2 LINE L2 -810 2503 1706 814 229 55 27 chr3 30059070 30059253 -197465325 - MER5A DNA MER1_type 0 189 2 297 351 99 0 chr3 30059260 30059431 -197465147 - L2 LINE L2 -1635 1679 1492 394 297 103 26 chr3 30060587 30060742 -197463836 + MLT1I LTR MaLR 47 213 -196 611 204 171 7 chr3 30062480 30062632 -197461946 + MER5A DNA MER1_type 12 188 -1 244 143 0 0 chr3 30062794 30062829 -197461749 - tRNA-Gly-GGG tRNA tRNA -38 36 2 281 253 27 13 chr3 30063038 30063113 -197461465 - L2 LINE L2 0 3272 3197 21 0 0 0 chr3 30063706 30063727 -197460851 + AT_rich Low_complexity Low_complexity 1 21 0 377 311 28 0 chr3 30063742 30063848 -197460730 - MIR SINE MIR -122 140 32 24 53 0 0 chr3 30063903 30063941 -197460637 + AT_rich Low_complexity Low_complexity 1 38 0 273 261 122 9 chr3 30064106 30064221 -197460357 - L2 LINE L2 0 3272 3145 305 250 0 0 chr3 30064225 30064293 -197460285 + MER58 DNA MER1_type 2352 2419 -1 435 259 222 0 chr3 30064294 30064429 -197460149 - L2 LINE L2 -1026 2288 2124 271 383 57 5 chr3 30064448 30064641 -197459937 + MIR SINE MIR 12 214 -48 796 264 71 17 chr3 30064659 30064898 -197459680 + MIR SINE MIR 11 262 0 201 359 41 74 chr3 30065701 30065971 -197458607 + L2 LINE L2 2967 3227 -45 17441 182 28 34 chr3 30066016 30066381 -197458197 + L1MA2 LINE L1 16 382 -7183 1744 92 8 0 chr3 30066381 30066621 -197457957 - L1PA7 LINE L1 -3 6151 5910 17441 182 28 34 chr3 30066621 30069645 -197454933 + L1MA2 LINE L1 382 3423 -4142 186 43 0 0 chr3 30069645 30069668 -197454910 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 17441 182 28 34 chr3 30069668 30070227 -197454351 + L1MA2 LINE L1 3423 3984 -3581 462 101 0 0 chr3 30070227 30070296 -197454282 + (TA)n Simple_repeat Simple_repeat 2 70 0 17441 182 28 34 chr3 30070296 30072748 -197451830 + L1MA2 LINE L1 3984 6381 -1184 2801 125 15 5 chr3 30072748 30073157 -197451421 + MLT2A2 LTR ERVL 1 413 -40 313 283 0 22 chr3 30073192 30073284 -197451294 - L1MC4 LINE L1 -1339 6703 6614 238 222 22 0 chr3 30073286 30073376 -197451202 + (TA)n Simple_repeat Simple_repeat 2 93 0 3995 117 33 3 chr3 30073378 30073985 -197450593 + HERVL-A2 LTR ERVL 1640 2264 -3390 587 40 0 0 chr3 30073987 30074062 -197450516 + HERVL-A2 LTR ERVL 5580 5654 0 1877 105 50 4 chr3 30074062 30074399 -197450179 + MLT2A2 LTR ERVL 1 321 -132 540 0 0 0 chr3 30074399 30074459 -197450119 + (TA)n Simple_repeat Simple_repeat 1 60 0 198 0 0 0 chr3 30074458 30074480 -197450098 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 1877 105 50 4 chr3 30074459 30074520 -197450058 + MLT2A2 LTR ERVL 321 453 0 1558 201 0 21 chr3 30074522 30074901 -197449677 + L1MA2 LINE L1 6379 6749 -816 2844 119 119 31 chr3 30074903 30075201 -197449377 + L1PB2 LINE L1 5585 5855 -296 2251 143 12 6 chr3 30075201 30075536 -197449042 - MER1B DNA MER1_type 0 337 1 2844 119 119 31 chr3 30075536 30075758 -197448820 + L1PB2 LINE L1 5855 6151 0 6117 113 20 6 chr3 30075771 30075800 -197448778 + L1MA2 LINE L1 6744 6771 -952 1471 135 0 9 chr3 30075800 30076015 -197448563 - AluSg/x SINE Alu -15 297 85 6117 113 20 6 chr3 30076015 30076952 -197447626 + L1MA2 LINE L1 6771 7723 0 2175 77 3 3 chr3 30077689 30077987 -197446591 + L1PA6 LINE L1 5857 6154 0 473 330 92 37 chr3 30079520 30079962 -197444616 + L1ME LINE L1 5293 5762 -400 405 281 176 6 chr3 30080288 30080545 -197444033 - L1MC/D LINE L1 -760 5386 5186 982 235 50 4 chr3 30080587 30080847 -197443731 + L1ME3A LINE L1 5527 5798 -372 717 288 34 48 chr3 30080959 30081313 -197443265 + L1ME3A LINE L1 5818 6166 -4 24 53 0 0 chr3 30081514 30081552 -197443026 + AT_rich Low_complexity Low_complexity 1 38 0 1457 194 68 21 chr3 30081930 30082270 -197442308 - MLT1A1 LTR MaLR 0 365 10 198 143 0 0 chr3 30084165 30084200 -197440378 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 224 20 0 chr3 30084206 30084255 -197440323 - MIR SINE MIR -25 237 188 6855 71 14 0 chr3 30084628 30085664 -197438914 - L1PA7 LINE L1 0 6154 5116 4501 138 72 4 chr3 30086086 30086853 -197437725 + L1PA16 LINE L1 5340 6158 -8 839 199 30 6 chr3 30086966 30087132 -197437446 + MER3 DNA MER1_type 1 123 -86 381 43 0 0 chr3 30087319 30087366 -197437212 + (TA)n Simple_repeat Simple_repeat 2 48 0 31 0 0 0 chr3 30087426 30087457 -197437121 + AT_rich Low_complexity Low_complexity 1 31 0 1028 187 112 22 chr3 30087536 30087803 -197436775 - L1MB8 LINE L1 0 6178 5888 2429 53 0 10 chr3 30087816 30088117 -197436461 - AluY SINE Alu -13 298 1 22 70 0 0 chr3 30088235 30088278 -197436300 + AT_rich Low_complexity Low_complexity 1 43 0 6939 36 4 1 chr3 30089283 30090126 -197434452 + L1PA5 LINE L1 5309 6153 -1 570 228 0 0 chr3 30090248 30090371 -197434207 + L1MB5 LINE L1 6038 6160 -14 483 268 88 35 chr3 30091364 30091625 -197432953 + MLT1L LTR MaLR 119 393 -222 913 310 113 20 chr3 30091662 30092052 -197432526 - LTR16A LTR ERVL -22 428 3 503 312 90 0 chr3 30092060 30092249 -197432329 + MLT1L LTR MaLR 410 615 0 501 311 15 0 chr3 30092667 30092799 -197431779 + MIR3 SINE MIR 72 205 -3 1544 240 31 9 chr3 30093361 30093782 -197430796 + L1ME3 LINE L1 5338 5767 -397 1371 238 12 19 chr3 30093787 30094107 -197430471 + L1ME3 LINE L1 5845 6162 0 516 276 48 0 chr3 30094368 30094513 -197430065 - MIR SINE MIR -74 188 37 491 31 15 0 chr3 30094815 30094880 -197429698 + (CA)n Simple_repeat Simple_repeat 1 66 0 26 0 0 0 chr3 30095192 30095218 -197429360 + AT_rich Low_complexity Low_complexity 1 26 0 1281 183 25 108 chr3 30095565 30095963 -197428615 - MLT1A1 LTR MaLR 0 365 1 191 273 45 0 chr3 30096148 30096214 -197428364 + MIR SINE MIR 66 134 -128 2373 91 39 35 chr3 30096259 30096665 -197427913 + L1MA3 LINE L1 5896 6303 -2 242 296 23 0 chr3 30097266 30097354 -197427224 - L1MC4 LINE L1 -1339 6703 6614 476 287 0 6 chr3 30097461 30097642 -197426936 + (TA)n Simple_repeat Simple_repeat 1 180 0 256 217 22 43 chr3 30097683 30097775 -197426803 - L1MC4 LINE L1 -1339 6703 6614 254 303 0 0 chr3 30097796 30097885 -197426693 + L1MC4 LINE L1 6615 6703 -1339 * 255 294 0 0 chr3 30097819 30097904 -197426674 - L1MC4 LINE L1 -1339 6703 6619 309 169 22 11 chr3 30099543 30099632 -197424946 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 0 0 0 chr3 30099745 30099768 -197424810 + (T)n Simple_repeat Simple_repeat 1 23 0 1840 161 27 21 chr3 30100041 30100414 -197424164 + THE1C LTR MaLR 1 375 0 298 244 72 54 chr3 30100469 30100604 -197423974 + MLT1C LTR MaLR 35 182 -285 183 339 119 0 chr3 30101709 30101827 -197422751 - MIR3 SINE MIR -7 201 70 361 251 46 109 chr3 30102180 30102419 -197422159 + L1ME4a LINE L1 5632 5855 -266 1945 169 0 10 chr3 30102542 30102855 -197421723 - AluJb SINE Alu -2 310 1 2525 58 0 0 chr3 30103064 30103374 -197421204 + AluY SINE Alu 1 310 -1 1989 195 35 53 chr3 30103537 30104049 -197420529 + MLT1D LTR MaLR 3 505 0 1935 99 22 4 chr3 30104454 30104727 -197419851 + AluSx SINE Alu 1 278 -34 2148 97 3 17 chr3 30105467 30105792 -197418786 - AluSx SINE Alu 0 312 1 1554 185 37 85 chr3 30105915 30106396 -197418182 - LTR37B LTR ERV1 -5 463 6 258 222 194 0 chr3 30106727 30106799 -197417779 - MIR SINE MIR -69 193 108 27 0 0 0 chr3 30107226 30107253 -197417325 + AT_rich Low_complexity Low_complexity 1 27 0 415 369 98 19 chr3 30107585 30107954 -197416624 + L2 LINE L2 2871 3268 -4 364 338 153 0 chr3 30109468 30109625 -197414953 - MER5A DNA MER1_type 0 189 9 556 206 94 25 chr3 30111677 30111837 -197412741 - MLT1D LTR MaLR -327 178 8 24 32 0 0 chr3 30112375 30112406 -197412172 + AT_rich Low_complexity Low_complexity 1 31 0 273 195 0 49 chr3 30112699 30112781 -197411797 - MLT2F LTR ERVL -2 661 584 269 263 38 12 chr3 30112948 30113028 -197411550 + MIR SINE MIR 49 130 -132 1011 221 46 36 chr3 30113046 30113353 -197411225 - MLT2C1 LTR ERVL -87 310 1 308 253 101 10 chr3 30114935 30115034 -197409544 + MLT1I LTR MaLR 281 388 -21 694 241 208 45 chr3 30115375 30115477 -197409101 + MLT1G LTR MaLR 43 127 -463 1783 193 0 3 chr3 30115477 30115783 -197408795 + AluJb SINE Alu 1 305 -7 694 241 208 45 chr3 30115783 30116129 -197408449 + MLT1G LTR MaLR 127 588 -2 592 246 43 7 chr3 30116276 30116387 -197408191 + Tigger5 DNA MER2_type 32 150 -2173 276 30 0 0 chr3 30116387 30116420 -197408158 + (TC)n Simple_repeat Simple_repeat 1 33 0 592 246 43 7 chr3 30116420 30116446 -197408132 + Tigger5 DNA MER2_type 150 174 -2149 429 219 118 17 chr3 30116470 30116589 -197407989 + MER21B LTR ERV1 368 498 -365 1461 128 0 9 chr3 30116590 30116816 -197407762 + Tigger5 DNA MER2_type 2098 2321 -2 421 326 28 7 chr3 30116818 30116962 -197407616 - MIR SINE MIR -101 161 15 1310 186 71 59 chr3 30117750 30118142 -197406436 + L1MC4 LINE L1 7505 7901 -141 269 327 83 16 chr3 30118141 30118395 -197406183 - L1M4 LINE L1 -1143 5003 4733 * 355 245 24 4 chr3 30118445 30118697 -197405881 + (TA)n Simple_repeat Simple_repeat 1 257 0 305 295 120 83 chr3 30118708 30118971 -197405607 - L1M4 LINE L1 -2792 3354 3102 5234 45 6 3 chr3 30118971 30119615 -197404963 + L1PA7 LINE L1 5507 6152 -2 305 295 120 83 chr3 30119615 30120353 -197404225 - L1M4 LINE L1 -3044 3102 2316 4237 167 27 1 chr3 30120805 30121504 -197403074 - MER44D DNA MER2_type -16 589 1 21 0 0 0 chr3 30121906 30121927 -197402651 + AT_rich Low_complexity Low_complexity 1 21 0 441 345 48 33 chr3 30121932 30122268 -197402310 - HAL1 LINE L1 -878 1629 1289 233 254 0 16 chr3 30124510 30124573 -197400005 + MIR SINE MIR 200 261 -1 242 132 19 0 chr3 30124612 30124665 -197399913 + GA-rich Low_complexity Low_complexity 4 57 0 228 167 0 0 chr3 30125155 30125203 -197399375 + GA-rich Low_complexity Low_complexity 1 48 0 243 157 0 0 chr3 30125410 30125461 -197399117 + (TAA)n Simple_repeat Simple_repeat 3 53 0 438 298 21 21 chr3 30125556 30125697 -197398881 - MIR SINE MIR -116 146 6 375 287 17 29 chr3 30126482 30126656 -197397922 + GA-rich Low_complexity Low_complexity 3 174 0 1105 63 0 0 chr3 30127249 30127391 -197397187 - AluY SINE Alu -1 310 169 282 178 55 41 chr3 30127835 30127908 -197396670 - MIR SINE MIR -98 164 91 183 306 0 20 chr3 30128062 30128111 -197396467 - L2 LINE L2 -211 3061 3014 1794 127 102 0 chr3 30128203 30128486 -197396092 + AluSx SINE Alu 1 312 0 584 282 66 11 chr3 30129044 30129317 -197395261 + AluSq SINE Alu 21 308 -5 330 275 183 0 chr3 30130189 30130320 -197394258 - MLT2E LTR ERVL -5 623 469 460 298 151 24 chr3 30130430 30130682 -197393896 - MLT2E LTR ERVL -310 318 35 869 260 9 22 chr3 30130704 30130927 -197393651 + MER58A DNA MER1_type 2 221 -3 196 298 18 0 chr3 30131021 30131078 -197393500 + L2 LINE L2 3207 3264 -8 508 344 13 0 chr3 30131345 30131502 -197393076 - L2 LINE L2 -261 3052 2894 10345 129 31 19 chr3 30131715 30134281 -197390297 - L1PA10 LINE L1 -3 6480 3891 12242 203 11 29 chr3 30134281 30137280 -197387298 - L1PA10 LINE L1 -2790 3671 714 225 0 0 0 chr3 30137280 30137305 -197387273 + (CTGTG)n Simple_repeat Simple_repeat 1 25 0 12242 203 11 29 chr3 30137305 30137404 -197387174 - L1PA10 LINE L1 -5747 714 615 828 290 34 0 chr3 30138166 30138408 -197386170 - MIR SINE MIR -6 256 8 713 249 103 33 chr3 30138720 30139021 -197385557 - L1ME4a LINE L1 -252 5869 5548 459 282 42 7 chr3 30139475 30139617 -197384961 - Charlie8 DNA MER1_type -2186 231 85 1273 218 24 85 chr3 30140716 30141138 -197383440 - MSTD LTR MaLR 0 396 1 201 268 175 0 chr3 30141903 30142000 -197382578 + L2 LINE L2 2576 2689 -625 2941 176 95 3 chr3 30142014 30142644 -197381934 - L1MB5 LINE L1 -1 6173 5486 754 327 55 3 chr3 30142649 30143009 -197381569 + L2 LINE L2 2683 3066 -247 3727 154 22 29 chr3 30143391 30144118 -197380460 - L1MB2 LINE L1 0 6171 5450 497 268 70 47 chr3 30144440 30144653 -197379925 + L2 LINE L2 3091 3308 -5 204 188 0 0 chr3 30144797 30144861 -197379717 + (TA)n Simple_repeat Simple_repeat 2 65 0 186 279 72 81 chr3 30144903 30145014 -197379564 + L2 LINE L2 3146 3255 -58 1610 162 1 2 chr3 30145035 30145510 -197379068 - L1P5 LINE L1 -646 5505 5031 3244 93 32 2 chr3 30145515 30145986 -197378592 - L1PA13 LINE L1 -4 6159 5675 1605 50 0 0 chr3 30146002 30146202 -197378376 - L1PA4 LINE L1 0 6155 5956 2450 81 52 8 chr3 30146203 30146584 -197377994 - L1PA13 LINE L1 -499 5664 5267 * 5925 78 6 6 chr3 30146573 30147377 -197377201 - L1PA7 LINE L1 -2 6152 5349 30830 125 15 40 chr3 30147477 30152845 -197371733 - L1PA7 LINE L1 -910 5236 2 3053 211 4 44 chr3 30152840 30153639 -197370939 - L1 LINE L1 -1101 5045 4279 * 7278 142 11 15 chr3 30154551 30156938 -197367640 - L1MA1 LINE L1 0 6302 3928 2490 205 2 0 chr3 30157141 30157657 -197366921 - L1 LINE L1 -819 5327 4811 2133 178 3 18 chr3 30157657 30158000 -197366578 - MER1B DNA MER1_type 0 339 2 773 150 0 0 chr3 30158000 30158133 -197366445 - L1 LINE L1 -1328 4818 4686 644 177 0 0 chr3 30158120 30158244 -197366334 - L1 LINE L1 -2180 3966 3843 * 1919 228 6 29 chr3 30158333 30158846 -197365732 - L1 LINE L1 -2275 3871 3371 6023 171 31 1 chr3 30158863 30159283 -197365295 + L1PB1 LINE L1 3970 4376 -1804 234 0 0 0 chr3 30159283 30159309 -197365269 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 30159309 30160657 -197363921 + L1PB1 LINE L1 4376 5811 -369 180 77 0 0 chr3 30160657 30160683 -197363895 + (TA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 30160683 30161065 -197363513 + L1PB1 LINE L1 5811 6180 0 15073 175 32 5 chr3 30161065 30163244 -197361334 - L1 LINE L1 -1436 6129 4011 2291 119 31 19 chr3 30163244 30163604 -197360974 - THE1B LTR MaLR 0 364 1 15073 175 32 5 chr3 30163604 30166480 -197358098 - L1 LINE L1 -3554 4011 943 1227 236 43 28 chr3 30166480 30166806 -197357772 + MLT1C LTR MaLR 134 464 -3 5371 239 26 42 chr3 30166808 30168640 -197355938 + L1MC1 LINE L1 2908 4710 -1436 313 192 199 19 chr3 30168740 30168896 -197355682 + L1ME1 LINE L1 1645 1828 -4712 1755 226 53 24 chr3 30168902 30169393 -197355185 - MLT1D LTR MaLR 0 505 1 5319 170 52 4 chr3 30169432 30170529 -197354049 + L1MC1 LINE L1 5186 6333 0 276 200 31 0 chr3 30170523 30170588 -197353990 + L1ME1 LINE L1 1861 1927 -4613 * 837 260 44 12 chr3 30170571 30170890 -197353688 + L1ME1 LINE L1 4541 4869 -1671 3063 235 69 10 chr3 30170895 30172346 -197352232 + L1ME1 LINE L1 5009 6541 -19 2272 83 0 3 chr3 30172475 30172764 -197351814 - AluSg1 SINE Alu -21 288 1 194 312 73 83 chr3 30172796 30172879 -197351699 + L2 LINE L2 2692 2774 -540 329 93 19 0 chr3 30172879 30172933 -197351645 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 312 73 83 chr3 30172933 30173067 -197351511 + L2 LINE L2 2774 2907 -407 198 0 0 0 chr3 30173112 30173134 -197351444 + (T)n Simple_repeat Simple_repeat 1 22 0 247 261 207 27 chr3 30173222 30173333 -197351245 + L2 LINE L2 3183 3313 0 985 196 168 9 chr3 30173486 30173914 -197350664 - Charlie1 DNA MER1_type 0 2761 1 343 259 69 52 chr3 30174163 30174337 -197350241 + MER5B DNA MER1_type 2 178 0 834 220 12 6 chr3 30174573 30174746 -197349832 + MER45A DNA AcHobo 1 174 -4 470 282 82 18 chr3 30175226 30175396 -197349182 - LTR33 LTR ERVL -315 206 26 995 354 22 22 chr3 30175720 30176212 -197348366 - ERVL LTR ERVL -522 5242 4751 282 284 0 0 chr3 30176218 30176292 -197348286 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 432 184 71 158 chr3 30177166 30177628 -197346950 - L1MC5 LINE L1 -62 7899 7478 516 221 16 16 chr3 30177634 30177761 -197346817 - L1MA4 LINE L1 -39 6261 6135 823 243 104 47 chr3 30177782 30178185 -197346393 - L1MC5 LINE L1 -465 7496 7071 588 297 53 42 chr3 30178197 30178460 -197346118 - L1MC4a LINE L1 -1068 6740 6475 438 250 52 0 chr3 30178480 30178616 -197345962 + LTR67 LTR ERVL 408 550 -7 214 338 14 0 chr3 30179800 30179874 -197344704 - L2 LINE L2 -8 3305 3231 4027 134 16 9 chr3 30181377 30182046 -197342532 + L1MC1 LINE L1 5659 6332 -1 1311 122 81 0 chr3 30182084 30182305 -197342273 + MSTA LTR MaLR 2 240 -188 358 171 0 49 chr3 30182303 30182385 -197342193 + AluJb SINE Alu 57 134 -168 * 21470 153 29 16 chr3 30182398 30183747 -197340831 - L1 LINE L1 -3484 4081 2752 186 43 0 0 chr3 30183747 30183770 -197340808 + (TC)n Simple_repeat Simple_repeat 2 24 0 21470 153 29 16 chr3 30183770 30186431 -197338147 - L1 LINE L1 -4813 2752 19 295 310 88 32 chr3 30187837 30188053 -197336525 - MER102b DNA MER1_type -28 313 86 218 322 33 22 chr3 30188589 30188679 -197335899 + MER5A DNA MER1_type 77 167 -22 * 290 279 13 13 chr3 30188608 30188687 -197335891 - MER5A DNA MER1_type -85 104 26 24 32 0 0 chr3 30189158 30189189 -197335389 + AT_rich Low_complexity Low_complexity 1 31 0 3613 263 40 57 chr3 30189353 30190869 -197333709 - L2 LINE L2 0 3313 1826 315 341 46 17 chr3 30191865 30192038 -197332540 - MIR SINE MIR -20 242 65 366 299 119 55 chr3 30192345 30192730 -197331848 + L2 LINE L2 98 507 -2807 301 355 9 0 chr3 30192861 30192968 -197331610 + L2 LINE L2 550 657 -2657 1290 203 126 54 chr3 30194113 30194462 -197330116 - MLT1B LTR MaLR -16 374 1 1005 173 23 45 chr3 30194633 30194853 -197329725 + MER20 DNA MER1_type 4 218 -1 382 327 149 30 chr3 30194900 30195236 -197329342 + L2 LINE L2 2236 2611 -703 333 234 43 0 chr3 30195412 30195453 -197329125 + MER94 DNA DNA 9 47 -87 438 79 0 0 chr3 30195453 30195516 -197329062 + (TG)n Simple_repeat Simple_repeat 1 63 0 333 234 43 0 chr3 30195516 30195568 -197329010 + MER94 DNA DNA 47 106 -28 3872 126 62 16 chr3 30195803 30196486 -197328092 + L1MA2 LINE L1 5546 6259 -45 15469 36 1 0 chr3 30196486 30199122 -197325456 + L1PA3 LINE L1 3516 6155 0 189 0 0 0 chr3 30199128 30199149 -197325429 + (CA)n Simple_repeat Simple_repeat 2 22 0 1389 74 0 0 chr3 30199150 30199326 -197325252 + MER1A DNA MER1_type 252 427 -102 263 140 18 0 chr3 30199345 30199402 -197325176 + L1MA3 LINE L1 6246 6303 -2 335 132 0 0 chr3 30200094 30200147 -197324431 - MLT2B1 LTR ERVL -3 517 465 2351 191 4 43 chr3 30200227 30200694 -197323884 - MLT2B1 LTR ERVL -71 449 1 31 26 0 0 chr3 30202368 30202406 -197322172 + AT_rich Low_complexity Low_complexity 1 38 0 5274 128 41 6 chr3 30202756 30203705 -197320873 - L1PB3 LINE L1 -7 6147 5164 2336 222 63 3 chr3 30203706 30204274 -197320304 - MER97a DNA MER1_type? -46 848 247 2537 291 20 11 chr3 30204284 30205128 -197319450 + L1MEc LINE L1 37 888 -5508 1915 157 0 0 chr3 30205129 30205410 -197319168 + AluJo SINE Alu 1 281 -31 212 0 36 0 chr3 30205415 30205443 -197319135 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1148 280 9 26 chr3 30205448 30205791 -197318787 - L1M4 LINE L1 -5515 1027 691 323 300 0 22 chr3 30205792 30205882 -197318696 - L1MEc LINE L1 -4608 1788 1701 267 31 0 0 chr3 30205951 30205983 -197318595 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 270 0 0 0 chr3 30205982 30206012 -197318566 + (GA)n Simple_repeat Simple_repeat 2 31 0 1977 115 4 0 chr3 30206012 30206282 -197318296 - AluSx SINE Alu -39 273 3 1964 150 7 3 chr3 30206300 30206607 -197317971 + AluSx SINE Alu 1 308 -4 336 308 15 15 chr3 30206914 30207047 -197317531 + C-rich Low_complexity Low_complexity 1 133 0 1194 256 75 10 chr3 30207226 30207757 -197316821 + L1MB7 LINE L1 1210 1772 -4833 700 210 6 6 chr3 30207748 30207924 -197316654 + L1MB7 LINE L1 2874 3049 -3595 * 1990 214 106 67 chr3 30207921 30209399 -197315179 + L1MEc LINE L1 930 3556 -2659 2007 244 75 11 chr3 30209417 30210174 -197314404 + L1MEc LINE L1 4227 5032 -1183 304 183 0 14 chr3 30210191 30210262 -197314316 + L1MEc LINE L1 5157 5226 -989 1703 252 35 13 chr3 30210459 30211078 -197313500 + L1MB7 LINE L1 4832 5464 -1180 3526 205 38 37 chr3 30211092 30212034 -197312544 + L1MB7 LINE L1 5586 6525 -157 957 190 57 0 chr3 30212034 30212245 -197312333 + L1MA9 LINE L1 6085 6307 -5 3526 205 38 37 chr3 30212245 30212381 -197312197 + L1MB7 LINE L1 6525 6659 -23 298 271 114 12 chr3 30212536 30212791 -197311787 + L1M4 LINE L1 3439 3719 -2427 1535 208 41 36 chr3 30212800 30213219 -197311359 - LTR52 LTR ERVL 0 421 1 630 302 105 24 chr3 30213326 30214504 -197310074 + L1M4 LINE L1 3742 5026 -1120 564 301 29 6 chr3 30214583 30214756 -197309822 - LTR16A LTR ERVL -242 208 32 21 36 0 0 chr3 30216667 30216695 -197307883 + AT_rich Low_complexity Low_complexity 1 28 0 4859 155 31 2 chr3 30217043 30217913 -197306665 - L1P LINE L1 -5240 906 12 9379 82 18 30 chr3 30218206 30219696 -197304882 + L1P LINE L1 910 2381 -3765 600 88 0 0 chr3 30219797 30219877 -197304701 + AluY SINE Alu 214 293 -18 838 145 0 0 chr3 30219878 30219995 -197304583 - AluJo/FLAM SINE Alu -185 117 1 348 218 145 8 chr3 30220003 30220127 -197304451 + L1MDa LINE L1 1798 1938 -4602 2081 77 4 0 chr3 30220132 30220393 -197304185 + AluY SINE Alu 6 267 -44 22836 73 3 2 chr3 30220641 30224523 -197300055 + L1PA6 LINE L1 2250 6145 -9 547 310 17 6 chr3 30224922 30225096 -197299482 + LTR16A LTR ERVL 32 207 -243 2840 155 63 15 chr3 30225439 30225962 -197298616 + MER44D DNA MER2_type 1 603 -2 947 201 11 0 chr3 30226482 30226666 -197297912 - MER5A DNA MER1_type 0 189 4 218 281 125 10 chr3 30226922 30227018 -197297560 + L2 LINE L2 2387 2493 -821 23 54 0 0 chr3 30227539 30227576 -197297002 + AT_rich Low_complexity Low_complexity 1 37 0 437 234 97 77 chr3 30228076 30228324 -197296254 + MER112 DNA MER1_type 1 253 -3 479 240 74 8 chr3 30228896 30229017 -197295561 - L2 LINE L2 0 3313 3185 347 194 0 0 chr3 30229501 30229573 -197295005 - HAL1b LINE L1 -742 606 535 * 2785 59 4 3 chr3 30229566 30230090 -197294488 - L1P2 LINE L1 -630 5524 5000 4046 53 4 0 chr3 30230090 30230632 -197293946 + L1P2 LINE L1 4435 4978 -1168 558 211 54 12 chr3 30231332 30231498 -197293080 - L1MA10 LINE L1 -1 6333 6161 409 149 0 0 chr3 30231507 30231574 -197293004 + L1MA7 LINE L1 5831 5897 -394 2645 43 3 0 chr3 30233399 30233704 -197290874 - AluY SINE Alu -5 306 1 209 298 95 0 chr3 30233819 30233903 -197290675 - L3 LINE CR1 -119 1458 1367 400 209 29 38 chr3 30234207 30234312 -197290266 + MIR SINE MIR 141 244 -18 854 197 36 0 chr3 30234683 30234876 -197289702 - MER3 DNA MER1_type -8 201 2 197 330 143 9 chr3 30235284 30235396 -197289182 + MIR SINE MIR 82 208 -54 187 301 97 11 chr3 30235498 30235591 -197288987 + L3 LINE CR1 1379 1479 -98 27 0 0 0 chr3 30236339 30236366 -197288212 + AT_rich Low_complexity Low_complexity 1 27 0 199 228 22 0 chr3 30236893 30236985 -197287593 + (TCCA)n Simple_repeat Simple_repeat 4 97 0 562 342 64 40 chr3 30237766 30238284 -197286294 + L2 LINE L2 2347 2876 -438 324 350 56 56 chr3 30238912 30239235 -197285343 + L2 LINE L2 2941 3263 -9 551 206 3 31 chr3 30240800 30240927 -197283651 + MER5A DNA MER1_type 1 114 -64 1304 104 0 16 chr3 30240998 30241181 -197283397 + AluSg/x SINE Alu 132 311 -1 355 344 62 33 chr3 30242173 30242414 -197282164 + L2 LINE L2 2565 2812 -502 413 276 128 68 chr3 30242442 30242808 -197281770 - L2 LINE L2 0 3313 2926 1841 156 113 43 chr3 30242985 30243383 -197281195 - MSTB LTR MaLR 0 426 1 398 265 86 83 chr3 30243578 30243891 -197280687 + MLT1H LTR MaLR 220 533 -16 2797 103 92 2 chr3 30244129 30244575 -197280003 + LTR19A LTR ERV1 1 486 0 26 30 0 0 chr3 30244593 30244626 -197279952 + AT_rich Low_complexity Low_complexity 1 33 0 241 315 76 11 chr3 30244660 30244752 -197279826 + L2 LINE L2 3163 3260 -12 2061 116 73 14 chr3 30245846 30246200 -197278378 + THE1C LTR MaLR 1 375 0 413 241 203 0 chr3 30247039 30247172 -197277406 + LTR16C LTR ERVL 317 476 -15 1649 161 38 10 chr3 30247276 30247567 -197277011 - AluJo SINE Alu -7 305 7 187 318 0 0 chr3 30248740 30248784 -197275794 + MIR SINE MIR 196 239 -23 219 359 57 0 chr3 30248810 30248916 -197275662 - L2 LINE L2 -224 3048 2937 40212 38 23 1 chr3 30249217 30255236 -197269342 - L1PA3 LINE L1 0 6155 4 2015 75 4 18 chr3 30256256 30256534 -197268044 - AluY SINE Alu -9 302 29 261 0 0 0 chr3 30257337 30257366 -197267212 + (T)n Simple_repeat Simple_repeat 1 29 0 205 325 124 35 chr3 30257774 30257943 -197266635 - MIR3 SINE MIR -7 201 18 2321 107 3 0 chr3 30258653 30258953 -197265625 - AluSp SINE Alu -11 302 2 674 295 39 47 chr3 30259117 30259476 -197265102 + LTR16A LTR ERVL 7 362 -88 1031 308 79 16 chr3 30259553 30260210 -197264368 - L2 LINE L2 -1 3312 2617 1778 263 71 43 chr3 30260707 30260868 -197263710 + L1M4 LINE L1 3297 3452 -2694 8452 87 15 1 chr3 30260868 30262836 -197261742 - L1PA7 LINE L1 -1 6153 4162 1778 263 71 43 chr3 30262836 30263462 -197261116 + L1M4 LINE L1 3452 4106 -2040 4738 201 81 112 chr3 30263473 30264744 -197259834 + L1MC3 LINE L1 5961 7191 -594 387 256 0 20 chr3 30264744 30264844 -197259734 + MLT1F1 LTR MaLR 35 133 -442 4738 201 81 112 chr3 30264844 30265422 -197259156 + L1MC3 LINE L1 7191 7785 0 403 276 117 54 chr3 30266076 30266315 -197258263 - MIR SINE MIR 0 262 9 7869 171 10 5 chr3 30266382 30266460 -197258118 + L1PB1 LINE L1 3710 3786 -2365 1968 147 0 17 chr3 30266460 30266759 -197257819 + AluSx SINE Alu 1 294 -18 7869 171 10 5 chr3 30266759 30269118 -197255460 + L1PB1 LINE L1 3786 6151 0 221 98 24 0 chr3 30269348 30269389 -197255189 + (TA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr3 30269702 30269740 -197254838 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr3 30270518 30270565 -197254013 + AT_rich Low_complexity Low_complexity 1 47 0 5778 147 71 35 chr3 30271195 30272383 -197252195 + Tigger3b DNA MER2_type 2 1231 0 186 333 0 28 chr3 30273493 30273565 -197251013 + L2 LINE L2 3232 3301 -12 1069 246 173 43 chr3 30274865 30275264 -197249314 + LTR16B LTR ERVL 1 451 -13 981 268 101 36 chr3 30275641 30276056 -197248522 + MLT1J2 LTR MaLR 1 442 -8 295 277 141 5 chr3 30276437 30276621 -197247957 - MER41B LTR ERV1 -299 336 128 460 248 63 136 chr3 30276695 30277078 -197247500 + MLT1H LTR MaLR 15 369 -221 2658 42 0 0 chr3 30278141 30278450 -197246128 + AluY SINE Alu 1 309 -2 688 274 159 36 chr3 30279003 30279531 -197245047 + MLT1G1 LTR MaLR 1 555 0 555 293 35 47 chr3 30279581 30279813 -197244765 - MIR SINE MIR -13 249 21 23 33 0 0 chr3 30279817 30279847 -197244731 + AT_rich Low_complexity Low_complexity 1 30 0 424 242 11 0 chr3 30280607 30280702 -197243876 - Zaphod DNA AcHobo 0 4031 3936 832 298 110 43 chr3 30280959 30281449 -197243129 + MLT1G1 LTR MaLR 73 595 0 206 337 102 20 chr3 30281499 30281597 -197242981 + MIR SINE MIR 27 132 -130 1649 181 22 0 chr3 30283973 30284293 -197240285 - L1P LINE L1 -1229 4917 4591 5830 110 17 2 chr3 30284294 30285469 -197239109 + L1PA16 LINE L1 4965 6157 -9 31 44 0 0 chr3 30285483 30285528 -197239050 + AT_rich Low_complexity Low_complexity 1 45 0 190 230 150 110 chr3 30285616 30285716 -197238862 + MER5A DNA MER1_type 6 109 -80 1967 128 0 0 chr3 30286262 30286544 -197238034 + AluY SINE Alu 30 311 0 1418 249 129 42 chr3 30287045 30287588 -197236990 - MLT1G LTR MaLR 0 590 1 25 31 0 0 chr3 30287923 30287955 -197236623 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 30288812 30288833 -197235745 + AT_rich Low_complexity Low_complexity 1 21 0 915 221 133 17 chr3 30289219 30289459 -197235119 - L1PA16 LINE L1 -3 6163 5896 301 301 0 0 chr3 30289895 30289978 -197234600 - L1MC4 LINE L1 -1340 6702 6620 352 263 54 71 chr3 30291007 30291231 -197233347 + L1MCa LINE L1 16 235 -6307 1688 240 38 45 chr3 30291408 30292287 -197232291 + L1M4 LINE L1 497 1348 -5198 1018 222 183 22 chr3 30292308 30292723 -197231855 + L1MCa LINE L1 261 742 -5902 1992 148 56 6 chr3 30292723 30293062 -197231516 - MER47A DNA MER2_type 0 366 11 2008 137 57 17 chr3 30293062 30293412 -197231166 - THE1B LTR MaLR 0 364 1 11465 91 15 5 chr3 30293412 30294976 -197229602 - THE1B-int LTR MaLR 0 1580 1 2251 107 51 28 chr3 30294976 30295332 -197229246 - THE1B LTR MaLR 0 364 1 2838 203 37 39 chr3 30295346 30296219 -197228359 + L1MCb LINE L1 470 1341 -4849 * 2965 245 80 17 chr3 30296206 30298136 -197226442 + L1MCb LINE L1 1608 3540 -3024 1480 219 12 3 chr3 30298183 30298526 -197226052 + L1PA16 LINE L1 5804 6149 -17 22 0 0 0 chr3 30298526 30298548 -197226030 + AT_rich Low_complexity Low_complexity 1 22 0 1484 207 63 107 chr3 30298573 30299180 -197225398 + L1MC4 LINE L1 7474 7995 0 6888 228 40 38 chr3 30299190 30300488 -197224090 + L1MB8 LINE L1 3564 4866 -1736 2001 122 32 102 chr3 30300488 30300891 -197223687 + THE1C LTR MaLR 1 375 0 6888 228 40 38 chr3 30300891 30302051 -197222527 + L1MB8 LINE L1 4866 6022 -580 1655 107 8 0 chr3 30302051 30302293 -197222285 - L1MA4 LINE L1 -424 5876 5633 2220 172 16 5 chr3 30302293 30302718 -197221860 + L1MA4 LINE L1 5870 6299 -1 1338 282 117 8 chr3 30302735 30303264 -197221314 + L1MB8 LINE L1 6010 6596 0 315 340 75 37 chr3 30303389 30303872 -197220706 + L2 LINE L2 1490 1990 -1324 360 353 20 25 chr3 30304555 30304756 -197219822 + L2 LINE L2 2302 2501 -813 203 152 0 0 chr3 30304817 30304850 -197219728 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 330 94 0 chr3 30305762 30305953 -197218625 + MIR SINE MIR 8 216 -46 344 242 0 0 chr3 30306014 30306080 -197218498 + MIR SINE MIR 197 262 0 1941 141 29 35 chr3 30306845 30307222 -197217356 + THE1C LTR MaLR 1 375 0 495 280 75 39 chr3 30310427 30310771 -197213807 + LTR16A1 LTR ERVL 115 453 -4 349 267 11 11 chr3 30312563 30312653 -197211925 - L2 LINE L2 -24 3289 3200 426 213 115 0 chr3 30312699 30312821 -197211757 - MIR SINE MIR -25 237 102 40574 34 23 2 chr3 30312861 30318886 -197205692 + L1PA2 LINE L1 3 6155 0 561 265 5 7 chr3 30319152 30319354 -197205224 - MLT2F LTR ERVL -409 254 9 2672 157 65 4 chr3 30319777 30320301 -197204277 + L1MB3 LINE L1 5626 6181 -2 1312 127 53 4 chr3 30320461 30320706 -197203872 + L1MA5 LINE L1 6040 6296 -4 1633 186 128 53 chr3 30320710 30321272 -197203306 - MER67D LTR ERV1 -4 399 25 422 138 75 0 chr3 30321355 30321435 -197203143 - LTR54 LTR ERV1 -424 86 1 521 233 27 14 chr3 30321663 30321809 -197202769 - MER57A-int LTR ERV1 -6427 1693 1546 1641 172 72 9 chr3 30322066 30322385 -197202193 - MER44D DNA MER2_type 0 609 1 1436 231 20 32 chr3 30322405 30322847 -197201731 - MER57A-int LTR ERV1 -1784 5753 5317 2054 122 0 49 chr3 30323893 30324221 -197200357 - AluSx SINE Alu 0 312 1 938 204 0 6 chr3 30325215 30325382 -197199196 - FRAM SINE Alu 0 166 1 617 312 26 13 chr3 30325558 30325789 -197198789 - MER57A-int LTR ERV1 -7290 247 14 439 250 56 12 chr3 30325803 30325963 -197198615 - MER57A LTR ERV1 0 403 237 368 158 73 24 chr3 30326046 30326128 -197198450 - LTR54 LTR ERV1 -424 86 1 465 163 0 0 chr3 30326128 30326208 -197198370 - MER67D LTR ERV1 -434 80 1 1132 239 114 74 chr3 30326718 30327242 -197197336 + L1ME LINE L1 309 853 -5687 1524 206 118 73 chr3 30327249 30327799 -197196779 + L1MD2 LINE L1 5768 6342 -17 455 299 95 9 chr3 30327896 30328267 -197196311 + L1ME LINE L1 2532 2969 -3571 570 253 17 34 chr3 30328492 30328725 -197195853 + L1MB8 LINE L1 5944 6172 -6 366 191 29 19 chr3 30328732 30328837 -197195741 + L1MCc LINE L1 52 157 -6266 281 167 17 0 chr3 30328836 30328896 -197195682 + L1MCc LINE L1 1135 1195 -5228 * 900 270 76 36 chr3 30328989 30329237 -197195341 + L1ME LINE L1 4504 4741 -1823 1960 140 20 0 chr3 30329237 30329529 -197195049 + AluSx SINE Alu 1 298 -14 900 270 76 36 chr3 30329529 30329564 -197195014 + L1ME LINE L1 4741 4773 -1791 2274 150 45 26 chr3 30329564 30329984 -197194594 - MSTA LTR MaLR 0 428 1 9074 153 64 4 chr3 30329984 30331541 -197193037 - MSTA-int LTR MaLR 0 1651 1 2068 185 33 33 chr3 30331541 30331969 -197192609 - MSTA LTR MaLR 0 428 1 900 270 76 36 chr3 30331969 30333190 -197191388 + L1ME LINE L1 4772 6193 -371 623 235 25 62 chr3 30333238 30333481 -197191097 + MER106A DNA MER1_type 2 235 -1 22 56 0 0 chr3 30334006 30334042 -197190536 + AT_rich Low_complexity Low_complexity 1 36 0 1244 287 90 36 chr3 30336327 30336909 -197187669 + L2 LINE L2 2456 3105 -208 524 237 34 0 chr3 30336909 30337027 -197187551 + FLAM_A SINE Alu 1 122 -11 1244 287 90 36 chr3 30337027 30337248 -197187330 + L2 LINE L2 3105 3313 0 24095 108 11 16 chr3 30338562 30342506 -197182072 + L1PA7 LINE L1 770 4694 -1452 6881 64 3 0 chr3 30342511 30343911 -197180667 + L1PA7 LINE L1 4758 6161 0 546 230 117 42 chr3 30343987 30344200 -197180378 + MIR SINE MIR 34 262 0 224 324 9 63 chr3 30344437 30344548 -197180030 + L2 LINE L2 3168 3272 0 351 331 5 65 chr3 30344590 30344774 -197179804 - L2 LINE L2 -234 3038 2866 860 198 22 127 chr3 30345606 30345969 -197178609 + LTR39 LTR ERV1 1 325 -458 633 221 13 7 chr3 30346023 30346177 -197178401 + LTR39 LTR ERV1 599 753 -30 367 283 182 25 chr3 30346319 30346517 -197178061 - MIR SINE MIR -29 233 5 1330 129 27 2 chr3 30346519 30346780 -197177798 - LTR54 LTR ERV1 0 510 212 25 31 0 0 chr3 30347027 30347059 -197177519 + AT_rich Low_complexity Low_complexity 1 32 0 3863 155 12 29 chr3 30347554 30348272 -197176306 - MER50 LTR ERV1 -28 706 1 1662 182 10 23 chr3 30348337 30348639 -197175939 - AluSg SINE Alu -12 298 1 712 203 6 0 chr3 30348999 30349162 -197175416 - L1P LINE L1 -1047 5099 4936 402 161 0 23 chr3 30349162 30349234 -197175344 + L1PA16 LINE L1 6081 6165 -1 2235 105 3 0 chr3 30349915 30350210 -197174368 - AluSx SINE Alu -16 296 1 626 197 41 14 chr3 30351516 30351663 -197172915 - L1MC3 LINE L1 -445 7340 7190 352 222 22 11 chr3 30351663 30351753 -197172825 - MLT1F1 LTR MaLR -442 125 35 2937 192 20 113 chr3 30351753 30352981 -197171597 - L1MC3 LINE L1 -688 7134 6006 1468 261 76 28 chr3 30353037 30353655 -197170923 - L1M4 LINE L1 -2042 4104 3457 8893 77 0 0 chr3 30353661 30355646 -197168932 + L1PA3 LINE L1 4162 6155 0 191 368 57 0 chr3 30355947 30356053 -197168525 + L2 LINE L2 2937 3048 -224 187 318 0 0 chr3 30356079 30356123 -197168455 - MIR SINE MIR -23 239 196 1649 161 38 10 chr3 30357293 30357584 -197166994 + AluJo SINE Alu 7 305 -7 413 241 203 0 chr3 30357688 30357821 -197166757 - LTR16C LTR ERVL -15 476 317 2061 116 73 14 chr3 30358660 30359014 -197165564 - THE1C LTR MaLR 0 375 1 241 315 76 11 chr3 30360108 30360200 -197164378 - L2 LINE L2 -12 3260 3163 26 30 0 0 chr3 30360234 30360267 -197164311 + AT_rich Low_complexity Low_complexity 1 33 0 2797 103 92 2 chr3 30360285 30360731 -197163847 - LTR19A LTR ERV1 0 486 1 398 265 86 83 chr3 30360969 30361282 -197163296 - MLT1H LTR MaLR -16 533 220 1841 156 113 43 chr3 30361477 30361875 -197162703 + MSTB LTR MaLR 1 426 0 884 186 52 4 chr3 30362075 30362306 -197162272 - AluY SINE Alu -41 270 29 252 0 0 0 chr3 30363108 30363136 -197161442 + (T)n Simple_repeat Simple_repeat 1 28 0 213 325 124 35 chr3 30363544 30363713 -197160865 - MIR3 SINE MIR -7 201 18 2322 110 3 0 chr3 30364423 30364723 -197159855 - AluSp SINE Alu -11 302 2 564 284 41 50 chr3 30364905 30365246 -197159332 + LTR16A LTR ERVL 25 362 -88 973 298 85 22 chr3 30365324 30365979 -197158599 - L2 LINE L2 -2 3311 2617 376 300 42 33 chr3 30366386 30366629 -197157949 + L1ME LINE L1 3211 3455 -2691 6811 62 6 2 chr3 30366638 30368023 -197156555 - L1PA7 LINE L1 -1 6153 4758 23943 109 11 16 chr3 30368028 30371971 -197152607 - L1PA7 LINE L1 -1452 4694 770 7613 147 41 33 chr3 30372869 30374379 -197150199 + L1P LINE L1 11 1532 -4614 8030 111 9 9 chr3 30374522 30375936 -197148642 - L1P3 LINE L1 -3903 2558 1139 388 248 111 0 chr3 30376277 30376394 -197148184 + MIR SINE MIR 99 228 -34 2086 132 0 10 chr3 30376667 30376971 -197147607 + AluSx SINE Alu 12 312 0 413 303 17 52 chr3 30377735 30378025 -197146553 + L1PA12 LINE L1 2 281 -7300 1413 139 31 38 chr3 30378781 30379068 -197145510 - THE1C LTR MaLR 0 375 91 7722 84 8 3 chr3 30379182 30380318 -197144260 + L1P LINE L1 3404 4545 -1601 514 355 18 0 chr3 30380581 30380798 -197143780 + MIR SINE MIR 15 235 -27 313 319 7 0 chr3 30381575 30381710 -197142868 + L1ME LINE L1 4900 5035 -1111 624 281 153 11 chr3 30381965 30382331 -197142247 + L1ME LINE L1 5354 5771 -393 2311 110 105 0 chr3 30382599 30382998 -197141580 + LTR7 LTR ERV1 1 441 -9 3186 118 5 50 chr3 30383283 30383317 -197141261 + L1P LINE L1 2095 2129 -4017 309 68 0 0 chr3 30383317 30383361 -197141217 + (TA)n Simple_repeat Simple_repeat 2 45 0 3186 118 5 50 chr3 30383361 30383382 -197141196 + L1P LINE L1 2129 2149 -3997 2660 87 0 6 chr3 30383382 30383748 -197140830 - L1PA5 LINE L1 -5 6149 5786 3186 118 5 50 chr3 30383748 30384293 -197140285 + L1P LINE L1 2149 2669 -3477 1794 172 14 8 chr3 30384667 30385327 -197139251 - L1PA5 LINE L1 -479 5684 5020 262 253 11 0 chr3 30385570 30385657 -197138921 + L1M4 LINE L1 2798 2885 -3964 3479 217 20 6 chr3 30385728 30386610 -197137968 + L1M4 LINE L1 2903 3797 -3051 848 164 20 40 chr3 30386781 30386982 -197137596 + MLT1B LTR MaLR 190 386 -4 195 298 131 0 chr3 30386986 30387070 -197137508 - MIR SINE MIR -126 136 42 217 267 89 11 chr3 30387171 30387261 -197137317 + MIR SINE MIR 47 143 -119 3274 188 21 4 chr3 30387964 30388715 -197135863 - L1 LINE L1 -1468 4678 3915 2020 296 67 20 chr3 30389106 30389920 -197134658 - L2 LINE L2 -237 3035 2174 2434 74 0 3 chr3 30390077 30390374 -197134204 + AluY SINE Alu 1 296 -15 2175 108 7 0 chr3 30390471 30390768 -197133810 + AluSx SINE Alu 1 299 -13 241 358 50 5 chr3 30391312 30391533 -197133045 + L1M4 LINE L1 4740 4970 -1878 2299 105 0 23 chr3 30391922 30392228 -197132350 - AluSg SINE Alu -11 299 1 1186 286 48 25 chr3 30392405 30392923 -197131655 - Tigger8 DNA MER2_type -126 540 11 445 271 30 56 chr3 30393002 30393322 -197131256 - MLT1F LTR MaLR -6 536 149 374 248 25 18 chr3 30393355 30393491 -197131087 - MLT1G3 LTR MaLR -349 200 8 1347 195 8 0 chr3 30393617 30393874 -197130704 + L1MC/D LINE L1 5374 5632 -712 419 145 13 0 chr3 30393879 30393955 -197130623 + L1MC1 LINE L1 6252 6328 -5 266 238 10 20 chr3 30394026 30394127 -197130451 + L1M4 LINE L1 5252 5351 -1497 342 324 10 0 chr3 30394186 30394288 -197130290 + MIR SINE MIR 157 259 -3 590 313 78 36 chr3 30394394 30394701 -197129877 - L2 LINE L2 -1538 1776 1457 201 328 15 0 chr3 30394728 30394795 -197129783 + MER5A DNA MER1_type 122 189 0 3885 112 28 39 chr3 30395163 30396260 -197128318 - L1PA11 LINE L1 -237 5937 4841 345 62 0 0 chr3 30396604 30396652 -197127926 + (TG)n Simple_repeat Simple_repeat 1 48 0 315 397 0 9 chr3 30397246 30397362 -197127216 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 30397799 30398024 -197126554 + LTR16A1 LTR ERVL 168 457 0 827 292 4 6 chr3 30399353 30399592 -197124986 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 30399610 30399662 -197124916 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 30399713 30399776 -197124802 + (ATG)n Simple_repeat Simple_repeat 3 66 0 640 298 21 29 chr3 30400259 30400497 -197124081 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 30400775 30400796 -197123782 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 30401276 30401315 -197123263 + AT_rich Low_complexity Low_complexity 1 39 0 5148 26 1 1 chr3 30401528 30402172 -197122406 - L1PA3 LINE L1 -894 5252 4605 7686 20 0 0 chr3 30402172 30403096 -197121482 + L1PA3 LINE L1 5260 6183 0 5472 23 0 0 chr3 30403173 30403871 -197120707 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 30404698 30404939 -197119639 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 30404941 30406351 -197118227 - THE1B-int LTR MaLR 0 1580 163 3223 76 30 11 chr3 30406351 30406787 -197117791 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 30406787 30406951 -197117627 - THE1B-int LTR MaLR -1417 163 1 1975 146 32 46 chr3 30406951 30407320 -197117258 - THE1B LTR MaLR 0 364 1 13797 45 0 0 chr3 30407852 30409624 -197114954 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 30409624 30410038 -197114540 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 30411195 30411467 -197113111 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 30411471 30411512 -197113066 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 30411566 30411758 -197112820 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 30412995 30413132 -197111446 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 30413157 30413327 -197111251 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 30413391 30413564 -197111014 - MLT1J1 LTR MaLR -289 222 6 1961 143 0 4 chr3 30413970 30414273 -197110305 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 30414375 30414606 -197109972 + MIR SINE MIR 26 261 -1 1104 280 45 47 chr3 30415250 30415653 -197108925 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 30415793 30416281 -197108297 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 30417129 30417154 -197107424 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 30417184 30418163 -197106415 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 30418320 30418617 -197105961 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 30418714 30419021 -197105557 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 30419021 30419046 -197105532 + (TA)n Simple_repeat Simple_repeat 1 25 0 649 283 20 16 chr3 30419115 30419366 -197105212 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 30419455 30419686 -197104892 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 30420034 30420228 -197104350 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 30420625 30420648 -197103930 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 30420838 30421016 -197103562 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 30421020 30421176 -197103402 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 30421312 30421482 -197103096 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 30423699 30424088 -197100490 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 30424832 30425137 -197099441 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 30426527 30426695 -197097883 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 30426881 30427249 -197097329 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 30428263 30428463 -197096115 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 30428482 30428598 -197095980 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 30428943 30429036 -197095542 - L2 LINE L2 0 3313 3219 450 259 47 75 chr3 30431795 30432050 -197092528 + LTR16A1 LTR ERVL 210 457 0 279 294 55 0 chr3 30432157 30432303 -197092275 + L1MC5 LINE L1 5805 5958 -1850 1846 145 93 3 chr3 30432325 30432670 -197091908 + MLT1B LTR MaLR 15 390 0 3677 245 10 22 chr3 30432674 30433935 -197090643 + L1M4 LINE L1 2787 4032 -2114 1683 221 113 35 chr3 30433996 30434688 -197089890 + L1MC5 LINE L1 6694 7439 -522 334 200 11 32 chr3 30434725 30434820 -197089758 + L1MEc LINE L1 1928 2020 -4376 4221 237 69 22 chr3 30434860 30435349 -197089229 + L1MEc LINE L1 2122 2587 -3628 1905 127 39 75 chr3 30435349 30435735 -197088843 + THE1C LTR MaLR 1 372 -3 4221 237 69 22 chr3 30435735 30436169 -197088409 + L1MEc LINE L1 2587 2999 -3216 2218 135 30 25 chr3 30436169 30436531 -197088047 - THE1B LTR MaLR 0 364 1 4221 237 69 22 chr3 30436531 30437291 -197087287 + L1MEc LINE L1 2999 3845 -2370 509 211 66 110 chr3 30437406 30437596 -197086982 + L1MC5 LINE L1 7610 7782 -179 2079 130 0 3 chr3 30437596 30437896 -197086682 + AluSx SINE Alu 1 299 -13 509 211 66 110 chr3 30437896 30438023 -197086555 + L1MC5 LINE L1 7782 7913 -48 39 0 0 0 chr3 30438032 30438071 -197086507 + AT_rich Low_complexity Low_complexity 1 39 0 209 358 11 32 chr3 30438343 30438438 -197086140 - L2 LINE L2 -6 3307 3215 750 213 46 51 chr3 30438634 30438850 -197085728 - MER58C DNA MER1_type 0 215 1 435 282 42 28 chr3 30440117 30440259 -197084319 - MIR SINE MIR -117 145 2 538 276 94 26 chr3 30440399 30440591 -197083987 - MIR SINE MIR -47 215 11 1361 115 15 10 chr3 30443951 30444151 -197080427 + AluSq SINE Alu 107 307 -6 3885 112 28 39 chr3 30444932 30446029 -197078549 - L1PA11 LINE L1 -237 5937 4841 327 65 0 0 chr3 30446373 30446419 -197078159 + (TG)n Simple_repeat Simple_repeat 1 46 0 315 397 0 9 chr3 30447013 30447129 -197077449 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 30447566 30447791 -197076787 + LTR16A1 LTR ERVL 168 457 0 849 286 2 19 chr3 30449120 30449359 -197075219 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 30449377 30449429 -197075149 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 30449480 30449543 -197075035 + (ATG)n Simple_repeat Simple_repeat 3 66 0 637 286 25 34 chr3 30450026 30450264 -197074314 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 30450542 30450563 -197074015 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 30451043 30451082 -197073496 + AT_rich Low_complexity Low_complexity 1 39 0 5136 28 1 1 chr3 30451295 30451939 -197072639 - L1PA3 LINE L1 -894 5252 4605 7658 21 0 0 chr3 30451939 30452859 -197071719 + L1PA3 LINE L1 5260 6179 0 5460 24 0 0 chr3 30452936 30453634 -197070944 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 30454461 30454702 -197069876 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 30454704 30456114 -197068464 - THE1B-int LTR MaLR 0 1580 163 3173 80 30 11 chr3 30456114 30456550 -197068028 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 30456550 30456714 -197067864 - THE1B-int LTR MaLR -1417 163 1 1933 152 32 46 chr3 30456714 30457083 -197067495 - THE1B LTR MaLR 0 364 1 13832 43 0 0 chr3 30457615 30459387 -197065191 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 30459387 30459801 -197064777 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 30460958 30461230 -197063348 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 30461234 30461275 -197063303 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 30461329 30461521 -197063057 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 30462758 30462895 -197061683 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 30462920 30463090 -197061488 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 30463154 30463327 -197061251 - MLT1J1 LTR MaLR -289 222 6 1935 146 0 4 chr3 30463733 30464036 -197060542 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 30464138 30464369 -197060209 + MIR SINE MIR 26 261 -1 1092 283 45 47 chr3 30465013 30465416 -197059162 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 30465556 30466044 -197058534 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 30466889 30466914 -197057664 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 30466944 30467923 -197056655 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 30468080 30468377 -197056201 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 30468474 30468781 -197055797 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 30468781 30468806 -197055772 + (TA)n Simple_repeat Simple_repeat 2 26 0 649 283 20 16 chr3 30468875 30469126 -197055452 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 30469215 30469446 -197055132 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 30469794 30469988 -197054590 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 30470385 30470408 -197054170 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 30470598 30470776 -197053802 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 30470780 30470936 -197053642 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 30471072 30471242 -197053336 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 30473459 30473848 -197050730 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 30474592 30474897 -197049681 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 30476287 30476455 -197048123 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 30476641 30477009 -197047569 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 30478023 30478223 -197046355 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 30478242 30478358 -197046220 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 30478703 30478796 -197045782 - L2 LINE L2 0 3313 3219 450 259 47 75 chr3 30481555 30481810 -197042768 + LTR16A1 LTR ERVL 210 457 0 279 294 55 0 chr3 30481917 30482063 -197042515 + L1MC5 LINE L1 5805 5958 -1850 1846 145 93 3 chr3 30482085 30482430 -197042148 + MLT1B LTR MaLR 15 390 0 3677 245 10 22 chr3 30482434 30483695 -197040883 + L1M4 LINE L1 2787 4032 -2114 1683 221 113 35 chr3 30483756 30484448 -197040130 + L1MC5 LINE L1 6694 7439 -522 334 200 11 32 chr3 30484485 30484580 -197039998 + L1MEc LINE L1 1928 2020 -4376 4221 237 69 22 chr3 30484620 30485109 -197039469 + L1MEc LINE L1 2122 2587 -3628 1905 127 39 75 chr3 30485109 30485495 -197039083 + THE1C LTR MaLR 1 372 -3 4221 237 69 22 chr3 30485495 30485929 -197038649 + L1MEc LINE L1 2587 2999 -3216 2218 135 30 25 chr3 30485929 30486291 -197038287 - THE1B LTR MaLR 0 364 1 4221 237 69 22 chr3 30486291 30487051 -197037527 + L1MEc LINE L1 2999 3845 -2370 509 211 66 110 chr3 30487166 30487356 -197037222 + L1MC5 LINE L1 7610 7782 -179 2079 130 0 3 chr3 30487356 30487656 -197036922 + AluSx SINE Alu 1 299 -13 509 211 66 110 chr3 30487656 30487783 -197036795 + L1MC5 LINE L1 7782 7913 -48 39 0 0 0 chr3 30487792 30487831 -197036747 + AT_rich Low_complexity Low_complexity 1 39 0 209 358 11 32 chr3 30488103 30488198 -197036380 - L2 LINE L2 -6 3307 3215 750 213 46 51 chr3 30488394 30488610 -197035968 - MER58C DNA MER1_type 0 215 1 435 282 42 28 chr3 30489877 30490019 -197034559 - MIR SINE MIR -117 145 2 538 276 94 26 chr3 30490159 30490351 -197034227 - MIR SINE MIR -47 215 11 1478 106 10 5 chr3 30493711 30493910 -197030668 + AluSq SINE Alu 107 306 -7 297 185 0 0 chr3 30493957 30494022 -197030556 + CT-rich Low_complexity Low_complexity 2 66 0 832 322 143 26 chr3 30494208 30494863 -197029715 + L2 LINE L2 2100 2831 -483 282 391 8 0 chr3 30495446 30495574 -197029004 - MER5B DNA MER1_type -29 149 21 259 386 14 14 chr3 30496023 30496163 -197028415 + MIR SINE MIR 15 154 -108 226 159 68 0 chr3 30497163 30497207 -197027371 + MIR SINE MIR 31 77 -185 1144 251 111 18 chr3 30497221 30497619 -197026959 + LTR16A LTR ERVL 16 450 0 802 207 12 30 chr3 30497619 30497788 -197026790 + MIR SINE MIR 76 241 -21 654 246 198 56 chr3 30498721 30499135 -197025443 + L2 LINE L2 2169 2641 -673 1915 145 3 27 chr3 30499365 30499661 -197024917 - AluJb SINE Alu -23 289 1 549 139 12 0 chr3 30499800 30499886 -197024692 + FLAM_A SINE Alu 41 127 -15 206 135 0 0 chr3 30499928 30499965 -197024613 + L2 LINE L2 3277 3313 0 313 351 37 27 chr3 30500033 30500221 -197024357 - MIR SINE MIR -13 249 60 351 0 0 0 chr3 30500575 30500614 -197023964 + (CA)n Simple_repeat Simple_repeat 1 39 0 271 216 0 0 chr3 30500713 30500764 -197023814 + MIR3 SINE MIR 135 185 -23 1760 158 46 146 chr3 30500971 30501490 -197023088 + MLT1C LTR MaLR 1 467 0 339 234 119 40 chr3 30501547 30501654 -197022924 + MER112 DNA MER1_type 1 98 -162 524 15 15 0 chr3 30501654 30501719 -197022859 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 339 234 119 40 chr3 30501719 30501812 -197022766 + MER112 DNA MER1_type 98 217 -43 26 50 0 0 chr3 30502321 30502361 -197022217 + AT_rich Low_complexity Low_complexity 1 40 0 1768 184 0 3 chr3 30502623 30502928 -197021650 + AluJo SINE Alu 1 304 0 1207 291 90 2 chr3 30503265 30503711 -197020867 + MER69 DNA AcHobo 84 568 -658 507 213 115 0 chr3 30503709 30503883 -197020695 + MER69 DNA AcHobo 2010 2203 -323 * 981 291 83 14 chr3 30504585 30505175 -197019403 + HAL1b LINE L1 120 750 -598 342 226 68 68 chr3 30505201 30505347 -197019231 + L1MB1 LINE L1 5610 5755 -415 1867 190 47 49 chr3 30505477 30505929 -197018649 + MER74C LTR ERVL 10 460 0 414 269 50 0 chr3 30505940 30506059 -197018519 - MER45A DNA AcHobo -53 125 1 49 52 0 0 chr3 30506181 30506258 -197018320 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr3 30506355 30506376 -197018202 + AT_rich Low_complexity Low_complexity 1 21 0 753 159 91 58 chr3 30506521 30506617 -197017961 + L1MB1 LINE L1 5954 6045 -123 1963 125 3 28 chr3 30506617 30506933 -197017645 + AluSx SINE Alu 1 309 0 753 159 91 58 chr3 30506933 30507043 -197017535 + L1MB1 LINE L1 6045 6168 0 1700 153 167 16 chr3 30507344 30507716 -197016862 + MSTA LTR MaLR 1 428 0 1339 202 12 19 chr3 30508775 30508901 -197015677 + AluJb SINE Alu 1 126 -186 423 38 0 0 chr3 30508901 30508954 -197015624 + (TA)n Simple_repeat Simple_repeat 1 53 0 303 93 0 0 chr3 30508956 30508999 -197015579 + (CA)n Simple_repeat Simple_repeat 2 44 0 1339 202 12 19 chr3 30508999 30509126 -197015452 + AluJb SINE Alu 127 255 -57 42 0 0 0 chr3 30509127 30509169 -197015409 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 30509271 30509293 -197015285 + AT_rich Low_complexity Low_complexity 1 22 0 2294 103 3 0 chr3 30509449 30509750 -197014828 - AluSx SINE Alu -10 302 1 680 274 95 40 chr3 30510166 30510589 -197013989 + LTR33 LTR ERVL 7 452 -69 22 56 0 0 chr3 30511631 30511667 -197012911 + AT_rich Low_complexity Low_complexity 1 36 0 1501 111 0 0 chr3 30512827 30513025 -197011553 + AluSg/x SINE Alu 97 294 -16 408 161 0 23 chr3 30513706 30513793 -197010785 - L1PA16 LINE L1 -1 6165 6081 688 196 7 0 chr3 30513793 30513941 -197010637 + L1P LINE L1 4951 5099 -1047 1916 161 121 5 chr3 30513946 30514319 -197010259 + MSTA LTR MaLR 1 416 -12 377 160 18 49 chr3 30514320 30514443 -197010135 + L1P LINE L1 5121 5236 -910 1892 159 62 0 chr3 30514543 30514863 -197009715 + MER2 DNA MER2_type 6 345 0 245 98 24 0 chr3 30514867 30514908 -197009670 + (CTAAA)n Simple_repeat Simple_repeat 4 45 0 231 229 0 16 chr3 30516019 30516080 -197008498 - MLT1H LTR MaLR -391 158 99 226 356 136 0 chr3 30516184 30516316 -197008262 + MIR3 SINE MIR 16 165 -43 1356 261 45 14 chr3 30516834 30517278 -197007300 + LTR37B LTR ERV1 5 462 -6 252 79 0 26 chr3 30518165 30518203 -197006375 + FLAM SINE Alu 86 122 -11 22 88 0 0 chr3 30518259 30518316 -197006262 + AT_rich Low_complexity Low_complexity 1 57 0 227 195 0 0 chr3 30519011 30519052 -197005526 + L2 LINE L2 3272 3312 -1 989 266 80 47 chr3 30519368 30519770 -197004808 - LTR16A LTR ERVL -18 432 18 195 129 0 0 chr3 30519835 30519866 -197004712 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 237 347 27 40 chr3 30520306 30520456 -197004122 - MIR SINE MIR -50 212 65 22 0 0 0 chr3 30521486 30521508 -197003070 + AT_rich Low_complexity Low_complexity 1 22 0 5794 116 28 11 chr3 30521641 30522495 -197002083 + L1MA3 LINE L1 5382 6253 -52 2090 124 3 3 chr3 30522495 30522794 -197001784 + AluSq SINE Alu 1 299 -14 5794 116 28 11 chr3 30522794 30522848 -197001730 + L1MA3 LINE L1 6253 6305 0 462 291 53 67 chr3 30522966 30523233 -197001345 - MIR SINE MIR 0 262 2 365 253 0 11 chr3 30523402 30523489 -197001089 + MARNA DNA Mariner 298 383 -203 229 346 88 13 chr3 30523531 30523690 -197000888 + MARNA DNA Mariner 398 568 -18 236 299 126 0 chr3 30524930 30525017 -196999561 - MIR SINE MIR -81 181 84 8438 254 65 21 chr3 30526594 30529338 -196995240 + L1ME1 LINE L1 1110 3732 -2483 2601 51 0 3 chr3 30529338 30529650 -196994928 + AluY SINE Alu 1 311 0 8438 254 65 21 chr3 30529650 30530075 -196994503 + L1ME1 LINE L1 3732 4137 -2078 1687 178 0 14 chr3 30530075 30530361 -196994217 + AluJo SINE Alu 7 288 -24 8438 254 65 21 chr3 30530361 30531286 -196993292 + L1ME1 LINE L1 4137 5348 -867 745 294 62 58 chr3 30531431 30532015 -196992563 + PABL_B LTR ERV1 82 667 0 2289 220 32 41 chr3 30532015 30532648 -196991930 + L1ME1 LINE L1 5604 6230 -5 6748 78 8 0 chr3 30533238 30534627 -196989951 + L1PA8 LINE L1 4769 6164 -8 250 269 0 30 chr3 30535420 30535487 -196989091 - L2 LINE L2 -1 3312 3248 2113 102 33 20 chr3 30535903 30536207 -196988371 - AluSx SINE Alu -4 308 1 272 325 12 0 chr3 30536298 30536381 -196988197 - L3 LINE CR1 -205 1372 1289 30 45 0 0 chr3 30536484 30536528 -196988050 + AT_rich Low_complexity Low_complexity 1 44 0 896 325 139 18 chr3 30536716 30537221 -196987357 - L3 LINE CR1 -330 1247 682 311 322 0 0 chr3 30537257 30537347 -196987231 + L1MC4 LINE L1 6614 6703 -1339 204 158 0 0 chr3 30537352 30537390 -196987188 + (TA)n Simple_repeat Simple_repeat 1 38 0 321 253 11 33 chr3 30537395 30537486 -196987092 - L1MC4 LINE L1 -1339 6703 6615 350 275 0 11 chr3 30537493 30537584 -196986994 - L1MC4 LINE L1 -1339 6703 6614 328 289 0 11 chr3 30537505 30537595 -196986983 + L1MC4 LINE L1 6614 6702 -1340 * 306 73 0 0 chr3 30537602 30537643 -196986935 + (CA)n Simple_repeat Simple_repeat 2 42 0 477 246 207 6 chr3 30537645 30537824 -196986754 - L3 LINE CR1 -903 674 460 23 0 0 0 chr3 30538788 30538811 -196985767 + AT_rich Low_complexity Low_complexity 1 23 0 492 25 25 25 chr3 30538870 30538949 -196985629 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 255 316 94 43 chr3 30539056 30539173 -196985405 - MIR SINE MIR -62 146 24 370 323 132 6 chr3 30539470 30539637 -196984941 + MIR3 SINE MIR 20 207 -1 530 251 97 91 chr3 30539806 30540242 -196984336 - MLT1J1 LTR MaLR 0 450 1 1629 161 17 3 chr3 30541222 30541520 -196983058 - MER33 DNA MER1_type -22 302 1 574 234 58 13 chr3 30543065 30543219 -196981359 + MIR SINE MIR 102 262 0 3633 117 11 0 chr3 30543401 30543922 -196980656 + MER1A DNA MER1_type 1 527 0 587 225 8 23 chr3 30544328 30544457 -196980121 + MLT1J2 LTR MaLR 83 209 -241 412 190 13 0 chr3 30544532 30544611 -196979967 + MLT1J2 LTR MaLR 361 440 -10 326 320 82 46 chr3 30544953 30545459 -196979119 + L2 LINE L2 2710 3311 -2 278 326 8 15 chr3 30545727 30545859 -196978719 - L1 LINE L1 -3588 2558 2428 230 128 0 0 chr3 30545919 30545958 -196978620 + MER46C DNA MER2_type 127 165 -173 378 0 0 0 chr3 30546461 30546503 -196978075 + (TA)n Simple_repeat Simple_repeat 2 43 0 961 251 29 2 chr3 30547056 30547292 -196977286 - MLT1E3 LTR MaLR 0 611 336 948 255 154 68 chr3 30547292 30547838 -196976740 - MLT1E LTR MaLR 0 593 1 961 251 29 2 chr3 30547838 30547866 -196976712 - MLT1E3 LTR MaLR -275 336 310 520 311 159 21 chr3 30547851 30548285 -196976293 + MLT1L LTR MaLR 112 605 -10 * 204 237 40 40 chr3 30548442 30548518 -196976060 + MIR SINE MIR 129 204 -58 2431 53 3 13 chr3 30549040 30549343 -196975235 + AluY SINE Alu 3 302 -9 656 219 42 110 chr3 30549516 30549982 -196974596 - MLT1H LTR MaLR 0 580 1 509 259 168 0 chr3 30550144 30550329 -196974249 + MIR SINE MIR 47 262 0 214 247 97 21 chr3 30551543 30551636 -196972942 - MIR SINE MIR -65 143 44 195 298 131 0 chr3 30551733 30551817 -196972761 + MIR SINE MIR 42 136 -126 2172 132 26 19 chr3 30551821 30552199 -196972379 - MLT1B LTR MaLR -4 386 6 1147 248 116 14 chr3 30552257 30552620 -196971958 - MLT1E2 LTR MaLR -10 616 217 529 218 62 76 chr3 30552665 30552890 -196971688 + L2 LINE L2 3027 3248 -65 895 184 29 7 chr3 30552934 30553125 -196971453 - MLT1D LTR MaLR -333 172 1 690 235 105 6 chr3 30553241 30553403 -196971175 + MER20B DNA MER1_type 38 215 -4 639 252 75 57 chr3 30553644 30553926 -196970652 - L2 LINE L2 0 3313 3027 490 236 159 19 chr3 30555362 30555449 -196969129 + MER5A DNA MER1_type 10 83 -106 2240 160 44 12 chr3 30555449 30555862 -196968716 - MSTB LTR MaLR 0 426 1 490 236 159 19 chr3 30555862 30555931 -196968647 + MER5A DNA MER1_type 83 188 -1 880 271 158 16 chr3 30555939 30556364 -196968214 + MLT1K LTR MaLR 2 486 -102 10352 32 2 2 chr3 30556446 30558464 -196966114 - L1PA4 LINE L1 -1 6154 4138 1478 259 85 30 chr3 30560447 30560952 -196963626 - MLT1H LTR MaLR -16 533 1 1052 152 69 73 chr3 30560993 30561355 -196963223 + MER31A LTR ERV1 10 483 -2 821 310 77 30 chr3 30562478 30562943 -196961635 - L2 LINE L2 0 3313 2827 429 252 0 0 chr3 30562945 30563052 -196961526 - L1P LINE L1 -1606 4540 4434 974 83 0 0 chr3 30563052 30563173 -196961405 + L1PA16 LINE L1 6036 6156 -10 364 302 26 42 chr3 30563191 30563383 -196961195 - L2 LINE L2 -461 2853 2665 216 97 0 0 chr3 30563655 30563686 -196960892 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 298 244 198 0 chr3 30565319 30565405 -196959173 - MLT1K LTR MaLR -3 585 483 579 92 0 0 chr3 30565434 30565521 -196959057 + (TC)n Simple_repeat Simple_repeat 2 88 0 730 119 0 0 chr3 30565611 30565712 -196958866 + MLT1A1 LTR MaLR 1 101 -264 635 211 64 65 chr3 30565718 30566072 -196958506 - LTR45B LTR ERV1 0 602 259 1618 144 0 0 chr3 30566245 30566481 -196958097 + MLT1A1 LTR MaLR 130 365 0 207 0 0 0 chr3 30566798 30566821 -196957757 + (CA)n Simple_repeat Simple_repeat 2 24 0 466 312 13 52 chr3 30566874 30567105 -196957473 + L3 LINE CR1 1282 1503 -74 26 0 0 0 chr3 30567293 30567319 -196957259 + AT_rich Low_complexity Low_complexity 1 26 0 1677 168 28 7 chr3 30567344 30567635 -196956943 - AluJb SINE Alu -9 303 7 252 349 23 8 chr3 30567705 30567834 -196956744 + MER102b DNA MER1_type 211 341 0 279 0 0 0 chr3 30567959 30567990 -196956588 + (TAA)n Simple_repeat Simple_repeat 3 33 0 320 366 23 6 chr3 30568068 30568243 -196956335 - MLT1I LTR MaLR 0 409 232 494 250 71 114 chr3 30568590 30568675 -196955903 - MLT1I LTR MaLR -2 424 337 2254 99 0 3 chr3 30568675 30568977 -196955601 + AluSg SINE Alu 1 301 -9 494 250 71 114 chr3 30568977 30569301 -196955277 - MLT1I LTR MaLR -89 337 1 505 241 26 43 chr3 30569307 30569446 -196955132 - MIR SINE MIR -61 147 54 275 249 55 152 chr3 30569569 30569734 -196954844 + MIR3 SINE MIR 52 200 -8 909 274 114 25 chr3 30570039 30570691 -196953887 + L2 LINE L2 2579 3310 -3 713 192 82 0 chr3 30571018 30571164 -196953414 - MER3 DNA MER1_type -28 181 24 1363 209 45 35 chr3 30572289 30572659 -196951919 - MLT1G LTR MaLR 0 590 155 650 247 52 6 chr3 30572788 30572962 -196951616 - MLT1G LTR MaLR -408 182 1 23 0 0 0 chr3 30573178 30573201 -196951377 + AT_rich Low_complexity Low_complexity 1 23 0 1986 127 0 7 chr3 30573201 30573484 -196951094 - AluSx SINE Alu -31 281 1 273 344 111 57 chr3 30574296 30574362 -196950216 - L2 LINE L2 -337 2977 2916 1694 189 10 13 chr3 30574362 30574675 -196949903 + AluJo SINE Alu 1 312 0 273 344 111 57 chr3 30574675 30574852 -196949726 - L2 LINE L2 -398 2916 2721 1175 218 142 27 chr3 30575767 30576134 -196948444 + MER20B DNA MER1_type 144 552 -231 622 228 158 6 chr3 30576145 30576303 -196948275 + MER5A DNA MER1_type 8 189 0 21 0 0 0 chr3 30576326 30576347 -196948231 + AT_rich Low_complexity Low_complexity 1 21 0 378 158 226 14 chr3 30576349 30576495 -196948083 + MER20B DNA MER1_type 605 781 -2 1648 87 0 5 chr3 30576954 30577161 -196947417 - AluY SINE Alu -18 293 88 409 316 63 13 chr3 30577782 30577940 -196946638 + MIR3 SINE MIR 38 203 -5 2358 142 129 5 chr3 30578057 30578438 -196946140 + MSTA LTR MaLR 1 428 0 5141 146 10 15 chr3 30578672 30579459 -196945119 - LTR39 LTR ERV1 0 783 1 324 320 95 25 chr3 30579619 30579819 -196944759 + L1ME LINE L1 5556 5769 -352 709 142 14 28 chr3 30579850 30579991 -196944587 - L1MC4 LINE L1 0 8042 7904 321 185 0 0 chr3 30579993 30580058 -196944520 + (TA)n Simple_repeat Simple_repeat 1 65 0 225 114 23 0 chr3 30580071 30580115 -196944463 - LTR66 LTR ERVL -172 438 394 459 175 19 48 chr3 30580168 30580250 -196944328 - L1MC4 LINE L1 -377 7665 7582 3493 136 118 60 chr3 30580250 30580483 -196944095 + LTR62 LTR ERVK 1 219 -500 2738 13 0 0 chr3 30580483 30580782 -196943796 + AluY SINE Alu 1 299 -12 3493 136 118 60 chr3 30580782 30580845 -196943733 + LTR62 LTR ERVK 219 277 -442 201 39 0 0 chr3 30580845 30580871 -196943707 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 3493 136 118 60 chr3 30580871 30581143 -196943435 + LTR62 LTR ERVK 277 618 -101 2453 77 3 0 chr3 30581143 30581453 -196943125 - AluY SINE Alu 0 311 1 3493 136 118 60 chr3 30581453 30581561 -196943017 + LTR62 LTR ERVK 618 718 -1 459 175 19 48 chr3 30581561 30581581 -196942997 - L1MC4 LINE L1 -460 7582 7566 995 165 0 0 chr3 30581581 30581739 -196942839 - FRAM SINE Alu -17 159 2 401 99 9 207 chr3 30581740 30581770 -196942808 - L1MC4 LINE L1 -468 7574 7540 1748 166 0 14 chr3 30581770 30582054 -196942524 + AluJb SINE Alu 3 282 -30 401 99 9 207 chr3 30582054 30582134 -196942444 - L1MC4 LINE L1 -502 7540 7486 460 214 56 8 chr3 30582217 30582343 -196942235 - LTR33 LTR ERVL -2 519 388 709 256 28 28 chr3 30582478 30582689 -196941889 - LTR33 LTR ERVL -308 213 3 207 280 20 0 chr3 30584832 30584882 -196939696 - L2 LINE L2 -14 3258 3208 2025 151 0 0 chr3 30585015 30585319 -196939259 - AluSx SINE Alu -8 304 1 194 302 19 126 chr3 30587082 30587241 -196937337 + L3 LINE CR1 84 225 -1352 1222 160 13 13 chr3 30587264 30587501 -196937077 - MER33 DNA MER1_type -56 268 32 348 259 59 12 chr3 30588857 30588942 -196935636 - MER91A DNA MER1_type -49 147 59 2058 134 0 25 chr3 30589023 30589343 -196935235 + AluSx SINE Alu 1 312 0 295 283 253 6 chr3 30589356 30589522 -196935056 + L2 LINE L2 3008 3214 -99 1872 173 3 3 chr3 30589789 30590096 -196934482 + AluSx SINE Alu 1 307 -5 396 326 168 24 chr3 30590300 30590591 -196933987 + L2 LINE L2 2925 3257 -15 292 291 134 15 chr3 30590604 30590738 -196933840 + L3 LINE CR1 523 672 -905 1092 152 68 115 chr3 30591608 30591806 -196932772 + MER33 DNA MER1_type 17 196 -2389 1896 184 7 0 chr3 30591806 30592115 -196932463 + AluJb SINE Alu 2 312 0 1092 152 68 115 chr3 30592115 30592239 -196932339 + MER33 DNA MER1_type 196 324 0 1338 279 39 3 chr3 30592300 30592659 -196931919 + LTR16C LTR ERVL 107 478 -13 2126 134 0 10 chr3 30592673 30592845 -196931733 - AluSx SINE Alu -8 304 135 309 26 0 0 chr3 30592845 30592883 -196931695 + (TG)n Simple_repeat Simple_repeat 1 38 0 2126 134 0 10 chr3 30592883 30593017 -196931561 - AluSx SINE Alu -177 135 1 325 320 8 31 chr3 30593043 30593171 -196931407 - MIR SINE MIR -133 129 5 1330 176 181 52 chr3 30593296 30593528 -196931050 + MLT1F1 LTR MaLR 3 204 -363 1472 143 65 154 chr3 30593528 30593879 -196930699 + MLT1B LTR MaLR 1 309 -81 1867 149 11 3 chr3 30593879 30594161 -196930417 + AluJb SINE Alu 1 284 -28 1472 143 65 154 chr3 30594161 30594237 -196930341 + MLT1B LTR MaLR 309 390 0 1330 176 181 52 chr3 30594237 30594534 -196930044 + MLT1F1 LTR MaLR 204 567 0 213 39 0 0 chr3 30594607 30594633 -196929945 + (TAA)n Simple_repeat Simple_repeat 2 27 0 20807 90 9 7 chr3 30594884 30597996 -196926582 - L1P2 LINE L1 -678 5476 2358 356 300 0 0 chr3 30598274 30598394 -196926184 + G-rich Low_complexity Low_complexity 1 120 0 213 413 0 0 chr3 30598441 30598579 -196925999 + G-rich Low_complexity Low_complexity 1 138 0 222 336 16 16 chr3 30598626 30598754 -196925824 + G-rich Low_complexity Low_complexity 5 132 0 * 311 290 11 0 chr3 30598662 30598755 -196925823 + GA-rich Low_complexity Low_complexity 3 96 0 403 138 0 0 chr3 30598758 30598816 -196925762 - MADE1 DNA Mariner -22 58 1 192 300 108 39 chr3 30598816 30598946 -196925632 - L2 LINE L2 -665 2649 2511 1885 133 59 3 chr3 30599154 30599440 -196925138 - AluSx SINE Alu -10 302 1 225 368 11 0 chr3 30599753 30599840 -196924738 - MIR SINE MIR -160 102 15 21 36 0 0 chr3 30599915 30599943 -196924635 + AT_rich Low_complexity Low_complexity 1 28 0 212 353 144 29 chr3 30600443 30600582 -196923996 - MIR3 SINE MIR -21 187 33 325 281 148 16 chr3 30600852 30600980 -196923598 + L2 LINE L2 3125 3269 -3 6482 172 8 3 chr3 30601067 30602829 -196921749 + L1P5 LINE L1 4013 5780 -371 249 234 29 16 chr3 30602842 30602947 -196921631 - L1MCa LINE L1 -1339 6983 1996 * 288 250 23 0 chr3 30602869 30602957 -196921621 + L1MC4 LINE L1 6614 6703 -1339 252 273 23 0 chr3 30602969 30603057 -196921521 + L1MC4 LINE L1 6614 6703 -1339 254 264 23 0 chr3 30603058 30603145 -196921433 + L1MC4 LINE L1 6615 6703 -1339 2600 110 3 16 chr3 30603163 30603537 -196921041 + L1PB1 LINE L1 5783 6151 0 406 265 114 65 chr3 30603655 30603900 -196920678 - LTR41 LTR ERVL -7 766 510 764 223 48 11 chr3 30604322 30604510 -196920068 - LTR41 LTR ERVL -578 195 1 298 234 13 130 chr3 30604571 30604725 -196919853 + MIR SINE MIR 123 258 -4 294 330 39 0 chr3 30604757 30604860 -196919718 + MIR SINE MIR 37 143 -65 465 286 50 37 chr3 30605668 30605829 -196918749 + MER5A DNA MER1_type 21 183 -6 1174 204 44 88 chr3 30605961 30606348 -196918230 - MLT1A2 LTR MaLR 0 374 5 363 226 361 0 chr3 30606609 30606742 -196917836 - MER5A DNA MER1_type 0 189 9 1882 186 73 133 chr3 30606977 30607594 -196916984 - MER119 DNA MER1_type 0 583 4 2363 192 88 13 chr3 30608764 30609320 -196915258 + L1ME2 LINE L1 5558 6155 -9 533 265 42 24 chr3 30610349 30610515 -196914063 + MIR SINE MIR 79 247 -15 1998 202 33 33 chr3 30610790 30611275 -196913303 + L1ME1 LINE L1 5644 6128 -38 989 368 103 15 chr3 30611301 30612040 -196912538 + L3 LINE CR1 286 1089 -488 185 365 54 0 chr3 30612107 30612181 -196912397 + L2 LINE L2 3155 3232 -40 753 283 76 57 chr3 30612359 30612855 -196911723 + MLT1G1 LTR MaLR 1 549 0 283 298 304 11 chr3 30613562 30613743 -196910835 + L3 LINE CR1 1331 1564 -13 247 241 264 6 chr3 30614500 30614674 -196909904 + MER112 DNA MER1_type 2 220 -40 1311 208 24 37 chr3 30615825 30616119 -196908459 - AluJb SINE Alu -21 291 2 188 313 16 0 chr3 30616255 30616319 -196908259 - L2 LINE L2 -66 3247 3183 180 0 0 0 chr3 30618517 30618537 -196906041 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr3 30618641 30618663 -196905915 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 30618986 30619015 -196905563 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 30619017 30619038 -196905540 + (CA)n Simple_repeat Simple_repeat 2 22 0 2064 142 0 10 chr3 30619997 30620306 -196904272 - AluSx SINE Alu 0 312 7 21 57 0 0 chr3 30620686 30620721 -196903857 + AT_rich Low_complexity Low_complexity 1 35 0 2460 54 17 0 chr3 30620872 30621168 -196903410 + AluY SINE Alu 3 303 -8 25 65 0 0 chr3 30622139 30622185 -196902393 + AT_rich Low_complexity Low_complexity 1 46 0 1911 226 88 17 chr3 30622506 30623029 -196901549 - MLT1F1 LTR MaLR -2 565 6 207 0 0 0 chr3 30624045 30624068 -196900510 + (CA)n Simple_repeat Simple_repeat 2 24 0 236 343 21 0 chr3 30624138 30624278 -196900300 + LTR16A1 LTR ERVL 305 447 -10 276 250 40 10 chr3 30624299 30624399 -196900179 + MER20 DNA MER1_type 100 202 -17 807 308 73 64 chr3 30624505 30625040 -196899538 - L2 LINE L2 -1215 2099 1560 1313 282 19 14 chr3 30625388 30625817 -196898761 + LTR16B LTR ERVL 34 464 0 930 186 11 6 chr3 30626774 30626951 -196897627 + MER5B DNA MER1_type 1 178 0 1552 273 50 37 chr3 30627098 30627429 -196897149 + L2 LINE L2 2459 2784 -529 782 223 114 5 chr3 30627429 30627631 -196896947 - MER58A DNA MER1_type 0 224 1 1552 273 50 37 chr3 30627631 30628047 -196896531 + L2 LINE L2 2784 3216 -97 247 248 171 0 chr3 30628052 30628157 -196896421 - MLT2F LTR ERVL -9 654 532 558 317 13 35 chr3 30628447 30628677 -196895901 + MIR SINE MIR 38 262 0 192 256 0 0 chr3 30628692 30628735 -196895843 - MIR SINE MIR -170 92 50 514 355 18 0 chr3 30629840 30630057 -196894521 - MIR SINE MIR -27 235 15 194 321 82 66 chr3 30630025 30630221 -196894357 + L2 LINE L2 2855 3053 -260 * 346 244 59 34 chr3 30630633 30630752 -196893826 - MLT1K LTR MaLR -305 283 162 243 132 0 0 chr3 30630754 30630792 -196893786 - MLT1L LTR MaLR -414 201 164 617 321 11 11 chr3 30631064 30631254 -196893324 + L2 LINE L2 3124 3313 0 666 219 88 19 chr3 30632796 30633001 -196891577 - L1ME3 LINE L1 -1 6161 5943 749 213 132 30 chr3 30633178 30633375 -196891203 + MER20 DNA MER1_type 3 219 0 361 224 0 24 chr3 30634627 30634712 -196889866 + MIR SINE MIR 180 262 0 31 0 0 0 chr3 30634911 30634942 -196889636 + AT_rich Low_complexity Low_complexity 1 31 0 448 303 83 25 chr3 30635369 30635696 -196888882 + L1MC4a LINE L1 5529 5874 -1934 414 0 0 0 chr3 30635714 30635760 -196888818 + (CA)n Simple_repeat Simple_repeat 2 47 0 261 209 88 81 chr3 30636060 30636208 -196888370 + L1ME LINE L1 4487 4635 -1511 21 0 0 0 chr3 30636431 30636452 -196888126 + AT_rich Low_complexity Low_complexity 1 21 0 1963 139 0 0 chr3 30636517 30636805 -196887773 + AluJb SINE Alu 22 309 -3 884 221 89 48 chr3 30636833 30637207 -196887371 - L1ME3A LINE L1 0 6170 5778 1556 202 40 8 chr3 30637207 30637559 -196887019 + MLT1A1 LTR MaLR 3 365 0 884 221 89 48 chr3 30637559 30637577 -196887001 - L1ME3A LINE L1 -392 5778 5762 675 255 58 0 chr3 30637655 30637843 -196886735 + L1ME LINE L1 5511 5709 -461 2154 208 22 38 chr3 30638711 30639140 -196885438 + L1MB8 LINE L1 5592 6015 -163 2208 114 7 3 chr3 30639140 30639438 -196885140 - AluSg SINE Alu -10 300 2 2154 208 22 38 chr3 30639438 30639594 -196884984 + L1MB8 LINE L1 6015 6172 -6 21 36 0 0 chr3 30639742 30639770 -196884808 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 30639833 30639868 -196884710 + AT_rich Low_complexity Low_complexity 1 35 0 508 327 88 33 chr3 30639903 30640209 -196884369 + L2 LINE L2 2633 2955 -359 800 267 32 14 chr3 30640215 30640422 -196884156 + MIR SINE MIR 2 215 -47 2508 80 0 0 chr3 30640422 30640734 -196883844 + AluSq SINE Alu 1 312 -1 800 267 32 14 chr3 30640734 30640747 -196883831 + MIR SINE MIR 215 226 -36 209 347 61 0 chr3 30640777 30640875 -196883703 + L2 LINE L2 2954 3057 -256 947 239 47 109 chr3 30640884 30641481 -196883097 - L2 LINE L2 -1 3312 2755 458 139 48 11 chr3 30641496 30641610 -196882968 + MLT1E LTR MaLR 501 585 -8 755 278 34 5 chr3 30641616 30641825 -196882753 - L2 LINE L2 -559 2755 2541 238 359 97 0 chr3 30641920 30642023 -196882555 + L2 LINE L2 3160 3272 0 192 152 0 0 chr3 30642038 30642071 -196882507 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 569 343 78 28 chr3 30642481 30642877 -196881701 + L1ME4a LINE L1 5266 5681 -440 323 259 51 57 chr3 30642886 30643044 -196881534 + L1ME4a LINE L1 5789 5945 -176 365 235 31 53 chr3 30643054 30643252 -196881326 + L1MD2 LINE L1 6090 7748 -60 426 39 0 0 chr3 30643431 30643483 -196881095 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 370 302 63 13 chr3 30643826 30643985 -196880593 + MIR SINE MIR 41 207 -55 283 262 56 24 chr3 30645171 30645297 -196879281 + LTR67 LTR ERVL 428 557 0 460 277 69 27 chr3 30645401 30645661 -196878917 + L1ME4a LINE L1 5850 6120 -1 1445 216 9 15 chr3 30645687 30646020 -196878558 + MLT1A1 LTR MaLR 35 365 0 23 0 0 0 chr3 30646055 30646078 -196878500 + AT_rich Low_complexity Low_complexity 1 23 0 233 193 0 35 chr3 30646436 30646493 -196878085 - Charlie1b DNA MER1_type -4 519 465 14062 196 24 6 chr3 30646503 30648323 -196876255 + L1PB1 LINE L1 4 1791 -5076 2240 151 28 8 chr3 30648323 30648680 -196875898 - THE1B LTR MaLR 0 364 1 14062 196 24 6 chr3 30648680 30652997 -196871581 + L1PB1 LINE L1 1791 6498 -369 226 171 43 14 chr3 30653005 30653075 -196871503 + (TA)n Simple_repeat Simple_repeat 2 73 0 209 153 18 45 chr3 30653100 30653211 -196871367 + (TA)n Simple_repeat Simple_repeat 1 108 0 2202 109 36 6 chr3 30653218 30653576 -196871002 + L1PB1 LINE L1 6499 6867 0 1955 165 54 34 chr3 30653577 30654043 -196870535 - Charlie1b DNA MER1_type -48 475 1 240 326 47 0 chr3 30654473 30654559 -196870019 - MIR SINE MIR -6 256 167 653 307 34 57 chr3 30656252 30656640 -196867938 + L2 LINE L2 2933 3311 -2 1892 84 4 4 chr3 30657291 30657552 -196867026 - L1PA6 LINE L1 -1 6153 5893 19874 110 23 14 chr3 30657693 30660895 -196863683 - L1P LINE L1 -2904 3242 11 596 284 74 8 chr3 30662016 30662259 -196862319 - MIR SINE MIR -3 259 3 2329 111 0 6 chr3 30662282 30662597 -196861981 + AluSq SINE Alu 1 313 0 1988 131 0 13 chr3 30664475 30664773 -196859805 + AluSx SINE Alu 1 294 -18 27 29 0 0 chr3 30664941 30664975 -196859603 + AT_rich Low_complexity Low_complexity 1 34 0 266 260 32 8 chr3 30665360 30665483 -196859095 + L1ME4a LINE L1 4479 4604 -1542 332 337 81 50 chr3 30665513 30665644 -196858934 + L1ME4a LINE L1 4629 4754 -1392 1859 147 0 7 chr3 30665644 30665929 -196858649 + AluJb SINE Alu 1 283 -29 332 337 81 50 chr3 30665929 30666215 -196858363 + L1ME4a LINE L1 4754 5059 -1087 1134 275 115 15 chr3 30666410 30666872 -196857706 - LTR33 LTR ERVL -2 519 12 367 294 20 6 chr3 30667118 30667320 -196857258 + L1ME4a LINE L1 5679 5884 -237 20821 172 26 18 chr3 30668267 30669740 -196854838 + L1PA13 LINE L1 984 2443 -5158 2477 7 0 7 chr3 30669740 30670015 -196854563 - AluYa5 SINE Alu 0 311 39 20821 172 26 18 chr3 30670015 30670413 -196854165 + L1PA13 LINE L1 2443 2836 -4765 1913 139 28 3 chr3 30670413 30670701 -196853877 + AluSx SINE Alu 1 295 -17 20821 172 26 18 chr3 30670701 30670852 -196853726 + L1PA13 LINE L1 2836 2984 -4617 1771 167 43 32 chr3 30670852 30671223 -196853355 + THE1C LTR MaLR 1 375 0 20821 172 26 18 chr3 30671223 30674960 -196849618 + L1PA13 LINE L1 2984 7601 0 26 30 0 0 chr3 30674981 30675014 -196849564 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr3 30675090 30675113 -196849465 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 926 225 40 24 chr3 30675361 30675610 -196848968 + MLT1F LTR MaLR 1 253 -289 214 128 0 51 chr3 30675620 30675659 -196848919 + (GGGAA)n Simple_repeat Simple_repeat 5 41 0 307 291 8 43 chr3 30675659 30675776 -196848802 + HAL1 LINE L1 1454 1566 -941 409 238 0 12 chr3 30675778 30675862 -196848716 + MIR SINE MIR 9 91 -171 247 289 72 62 chr3 30676402 30676499 -196848079 + L2 LINE L2 3139 3236 -36 747 261 63 43 chr3 30676653 30676956 -196847622 + MER93a LTR ERV1 94 402 0 327 260 36 64 chr3 30677420 30677559 -196847019 - MIR SINE MIR -57 151 20 2196 74 0 40 chr3 30677755 30678052 -196846526 - AluY SINE Alu -26 285 1 500 159 0 0 chr3 30678546 30678634 -196845944 + L1PA16 LINE L1 6070 6157 -9 245 287 85 0 chr3 30679062 30679156 -196845422 + MER94 DNA DNA 10 111 -23 448 325 45 51 chr3 30679182 30679514 -196845064 + L1ME4a LINE L1 5621 5950 -171 732 191 0 40 chr3 30679518 30679670 -196844908 - MER45A DNA AcHobo 0 178 33 1632 198 18 9 chr3 30679673 30680011 -196844567 - MLT1A1 LTR MaLR -2 363 23 244 381 9 0 chr3 30680284 30680389 -196844189 - MER5B DNA MER1_type -5 173 68 31651 84 16 13 chr3 30681031 30684995 -196839583 - L1PA6 LINE L1 -3 6151 2200 2693 75 17 0 chr3 30684995 30685356 -196839222 + L1PA5 LINE L1 5786 6152 -2 31651 84 16 13 chr3 30685356 30685382 -196839196 - L1PA6 LINE L1 -3954 2200 2176 246 32 0 0 chr3 30685382 30685413 -196839165 + (TA)n Simple_repeat Simple_repeat 1 31 0 31651 84 16 13 chr3 30685413 30687018 -196837560 - L1PA6 LINE L1 -3978 2176 544 499 216 90 0 chr3 30687139 30687250 -196837328 - MER96 DNA MER1_type? -54 121 1 473 209 104 43 chr3 30687798 30687936 -196836642 + MER5A DNA MER1_type 11 179 -10 2672 50 0 6 chr3 30687997 30688335 -196836243 - L1PA4 LINE L1 0 6155 5820 693 0 0 0 chr3 30688335 30688416 -196836162 + L1P1 LINE L1 5678 5758 -397 1856 169 41 32 chr3 30688541 30689086 -196835492 + MLT2A2 LTR ERVL 1 554 0 382 195 88 26 chr3 30689163 30689276 -196835302 + MER20B DNA MER1_type 43 162 -621 646 288 79 16 chr3 30689632 30690127 -196834451 - MLT1G1 LTR MaLR -1 594 1 191 365 54 0 chr3 30690305 30690379 -196834199 - L2 LINE L2 -40 3232 3155 1053 368 103 15 chr3 30690446 30691185 -196833393 - L3 LINE CR1 -488 1089 286 1775 202 33 35 chr3 30691211 30691697 -196832881 - L1ME1 LINE L1 -38 6128 5644 551 271 42 24 chr3 30691972 30692138 -196832440 - MIR SINE MIR -15 247 79 2057 196 88 13 chr3 30693167 30693723 -196830855 - L1ME2 LINE L1 -9 6155 5558 690 286 118 0 chr3 30694894 30695114 -196829464 + MER119 DNA MER1_type 4 249 -334 7328 38 1 2 chr3 30697149 30698358 -196826220 + L1PA4 LINE L1 4945 6154 -1 3726 32 6 8 chr3 30698439 30698932 -196825646 + L1P LINE L1 4138 4629 -1517 435 282 42 28 chr3 30700614 30700756 -196823822 - MIR SINE MIR -117 145 2 474 319 84 11 chr3 30700896 30701087 -196823491 - MIR SINE MIR -47 215 11 1657 253 48 42 chr3 30701916 30702391 -196822187 - L1ME2 LINE L1 -1355 4791 4307 1694 182 0 14 chr3 30702391 30702677 -196821901 - AluJo SINE Alu -24 288 7 1657 253 48 42 chr3 30702677 30703099 -196821479 - L1ME2 LINE L1 -1839 4307 3889 2367 29 0 7 chr3 30703100 30703375 -196821203 - AluY SINE Alu 0 311 39 16021 139 24 13 chr3 30703375 30703774 -196820804 + L1P LINE L1 1832 2225 -3921 1986 130 32 0 chr3 30703774 30704059 -196820519 + AluSx SINE Alu 1 294 -18 16021 139 24 13 chr3 30704059 30704210 -196820368 + L1P LINE L1 2225 2373 -3773 1659 164 57 33 chr3 30704210 30704576 -196820002 + THE1C LTR MaLR 1 375 0 16021 139 24 13 chr3 30704576 30706921 -196817657 + L1P LINE L1 2373 4761 -1385 21 57 0 0 chr3 30707680 30707715 -196816863 + AT_rich Low_complexity Low_complexity 1 35 0 2113 90 0 4 chr3 30707866 30708173 -196816405 + AluSc SINE Alu 3 308 0 1161 93 0 83 chr3 30708173 30708378 -196816200 + MER4B LTR ERV1 20 207 -403 1973 127 17 0 chr3 30708383 30708675 -196815903 + AluSx SINE Alu 1 297 -15 1899 179 16 25 chr3 30708872 30709240 -196815338 + MLT1A1 LTR MaLR 1 365 0 634 235 105 6 chr3 30710820 30710982 -196813596 - MER20 DNA MER1_type -4 215 38 842 178 29 7 chr3 30711098 30711289 -196813289 + MLT1D LTR MaLR 1 168 -337 480 223 67 76 chr3 30711333 30711557 -196813021 - L2 LINE L2 -65 3248 3027 465 242 159 19 chr3 30712994 30713081 -196811497 + MER5A DNA MER1_type 10 83 -106 2234 162 44 12 chr3 30713081 30713494 -196811084 - MSTB LTR MaLR 0 426 1 465 242 159 19 chr3 30713494 30713563 -196811015 + MER5A DNA MER1_type 83 188 -1 9913 39 1 2 chr3 30714206 30716100 -196808478 + L1PA5 LINE L1 4138 6028 -126 2359 139 5 1 chr3 30716206 30716741 -196807837 + L1PA13 LINE L1 1942 2488 -4309 2314 70 17 23 chr3 30716741 30717042 -196807536 - AluSx SINE Alu -13 299 1 3683 188 38 59 chr3 30717774 30718763 -196805815 + LTR5 LTR ERVK 1 969 0 2293 72 0 46 chr3 30718980 30719286 -196805292 - AluY SINE Alu -19 292 1 264 232 167 43 chr3 30719466 30719604 -196804974 + L2 LINE L2 3158 3312 -1 13890 94 22 18 chr3 30719902 30721932 -196802646 - L1P LINE L1 -3565 2581 544 541 216 90 0 chr3 30722053 30722164 -196802414 - MER96 DNA MER1_type? -54 121 1 14160 107 17 5 chr3 30722704 30724883 -196799695 - L1P LINE L1 -1562 4584 2379 1948 114 19 45 chr3 30725379 30725687 -196798891 - AluSx SINE Alu -12 300 1 21 82 0 0 chr3 30726059 30726108 -196798470 + AT_rich Low_complexity Low_complexity 1 49 0 947 275 25 11 chr3 30726397 30726681 -196797897 - MLT1H LTR MaLR -261 288 1 1085 152 69 73 chr3 30726722 30727084 -196797494 + MER31A LTR ERV1 10 483 -2 9674 87 43 3 chr3 30728106 30729614 -196794964 + L1P LINE L1 2175 3743 -2403 324 102 0 0 chr3 30730642 30730691 -196793887 + (CA)n Simple_repeat Simple_repeat 1 49 0 7108 62 14 1 chr3 30731703 30732937 -196791641 - L1PA5 LINE L1 -28 6126 4878 556 186 57 71 chr3 30733759 30733899 -196790679 - L1M3f LINE L1 -4946 382 245 208 332 12 12 chr3 30734325 30734433 -196790145 + MER5A DNA MER1_type 35 130 -48 373 189 123 0 chr3 30735396 30735518 -196789060 + MLT1B LTR MaLR 249 385 -5 184 267 89 11 chr3 30735705 30735795 -196788783 + MIR SINE MIR 47 143 -119 3304 169 25 53 chr3 30737196 30737970 -196786608 + L1MC1 LINE L1 5566 6317 -16 1795 196 78 89 chr3 30738008 30738558 -196786020 - MLT1E1 LTR MaLR -100 554 11 2270 201 97 23 chr3 30741077 30741595 -196782983 + MER68 LTR ERV1 1 556 -6 731 120 0 0 chr3 30743606 30743714 -196780864 + L1MA2 LINE L1 6197 6304 0 2039 123 14 0 chr3 30743879 30744172 -196780406 - AluSc SINE Alu -12 297 1 2153 117 28 3 chr3 30744372 30744697 -196779881 + MLT2A2 LTR ERVL 76 408 -45 360 190 0 0 chr3 30744700 30744779 -196779799 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 310 164 0 0 chr3 30744779 30744834 -196779744 + MLT2A2 LTR ERVL 399 453 0 775 139 7 33 chr3 30744856 30745007 -196779571 - L1MCa LINE L1 -5228 1198 1052 1372 115 24 5 chr3 30745007 30745216 -196779362 - pTR5 LTR ERV1 -2054 384 172 309 174 47 35 chr3 30745219 30745305 -196779273 - LTR30 LTR ERV1 -80 642 556 1774 204 26 24 chr3 30746126 30746588 -196777990 + L1M4 LINE L1 3474 3936 -2210 287 269 194 16 chr3 30746786 30746972 -196777606 - L1ME LINE L1 -284 5837 5619 5177 116 41 4 chr3 30747932 30749008 -196775570 - L1PA6 LINE L1 -162 5992 4874 10651 71 12 5 chr3 30749220 30750676 -196773902 + L1P LINE L1 1354 2819 -3327 1387 179 13 4 chr3 30750953 30751188 -196773390 - AluJo SINE Alu -75 237 1 320 208 30 10 chr3 30751188 30751289 -196773289 - Charlie2 DNA MER1_type -88 2774 2672 428 367 43 14 chr3 30751347 30751715 -196772863 + L1MEc LINE L1 55 433 -5963 23 0 0 0 chr3 30752033 30752056 -196772522 + AT_rich Low_complexity Low_complexity 1 23 0 2120 226 88 17 chr3 30752379 30752902 -196771676 + MLT1F1 LTR MaLR 6 565 -2 1023 214 0 0 chr3 30753951 30754138 -196770440 - MER5A DNA MER1_type -2 187 1 1740 241 77 20 chr3 30755363 30755970 -196768608 - L1M4 LINE L1 -3176 2970 2329 2214 118 49 29 chr3 30755975 30756322 -196768256 + THE1B LTR MaLR 11 364 0 3514 151 7 126 chr3 30756322 30757360 -196767218 + THE1B-int LTR MaLR 1 914 -666 2600 233 3 9 chr3 30757822 30758398 -196766180 + HERVK13 LTR ERVK 4572 5144 -2972 3546 43 5 0 chr3 30758401 30758816 -196765762 - LTR13 LTR ERVK -528 479 63 515 234 58 13 chr3 30759140 30759294 -196765284 + MIR SINE MIR 102 262 0 1571 220 35 8 chr3 30759476 30759849 -196764729 + MER1A DNA MER1_type 1 383 -146 1119 229 9 0 chr3 30760226 30760449 -196764129 - MLT1A1 LTR MaLR -2 363 139 225 94 0 0 chr3 30761701 30761733 -196762845 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1076 188 0 21 chr3 30761741 30761933 -196762645 - AluJo SINE Alu -38 274 87 236 143 95 0 chr3 30761950 30761992 -196762586 - L1ME2 LINE L1 -39 6125 6080 248 59 29 0 chr3 30762019 30762053 -196762525 - MER3 DNA MER1_type -160 49 15 481 258 138 45 chr3 30762053 30762386 -196762192 - L1ME3 LINE L1 -143 6019 5656 33 0 0 0 chr3 30762413 30762446 -196762132 + AT_rich Low_complexity Low_complexity 1 33 0 1652 157 0 4 chr3 30762921 30763170 -196761408 - AluJb SINE Alu -64 248 1 936 215 31 19 chr3 30763174 30763435 -196761143 + MER4-int LTR ERV1 2617 2880 -2056 576 212 52 57 chr3 30763481 30763775 -196760803 + MER4-int LTR ERV1 2552 5003 -1595 23 33 0 0 chr3 30764914 30764944 -196759634 + AT_rich Low_complexity Low_complexity 1 30 0 251 194 65 12 chr3 30765193 30765363 -196759215 + (TA)n Simple_repeat Simple_repeat 2 180 0 1348 68 2 70 chr3 30765508 30765833 -196758745 + L1PA6 LINE L1 5207 5512 -642 2690 92 7 30 chr3 30766111 30766546 -196758032 + L1PA6 LINE L1 5714 6138 -16 22 35 0 0 chr3 30767905 30767934 -196756644 + AT_rich Low_complexity Low_complexity 1 29 0 2183 168 29 5 chr3 30768629 30769046 -196755532 + L1MC1 LINE L1 5888 6314 -19 4764 181 34 20 chr3 30769671 30770661 -196753917 - L1M1 LINE L1 -4065 1263 342 363 236 42 24 chr3 30770793 30770958 -196753620 + L1ME LINE L1 5652 5819 -347 192 77 0 0 chr3 30771460 30771486 -196753092 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 229 282 242 8 chr3 30776728 30776852 -196747726 + L2 LINE L2 2602 2754 -560 534 277 19 42 chr3 30777098 30777311 -196747267 - L1M4 LINE L1 -3549 2597 2390 471 63 0 0 chr3 30777870 30777933 -196746645 + (TA)n Simple_repeat Simple_repeat 2 64 0 216 97 0 0 chr3 30778426 30778457 -196746121 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 292 233 0 58 chr3 30778550 30778636 -196745942 - MER5C DNA MER1_type 0 324 244 414 240 16 33 chr3 30778668 30778789 -196745789 - MER5C DNA MER1_type -204 120 2 1191 185 0 30 chr3 30779322 30779587 -196744991 + L1 LINE L1 4119 4375 -1771 604 192 13 53 chr3 30780539 30780690 -196743888 + MER63 DNA MER1_type 1 771 -291 473 302 20 35 chr3 30782183 30782385 -196742193 + MLT1J2 LTR MaLR 29 227 -223 34 24 0 0 chr3 30782676 30782717 -196741861 + AT_rich Low_complexity Low_complexity 1 41 0 1469 197 35 3 chr3 30783141 30783431 -196741147 + AluJo SINE Alu 4 302 0 363 165 9 122 chr3 30783450 30783565 -196741013 + Charlie5 DNA MER1_type 2523 2624 0 659 316 65 11 chr3 30783626 30783904 -196740674 + LTR16C LTR ERVL 107 399 -92 298 276 32 76 chr3 30784206 30784391 -196740187 + Charlie8 DNA MER1_type 89 265 -2152 823 212 33 11 chr3 30784875 30785059 -196739519 - MER5A DNA MER1_type 0 189 2 2038 115 3 0 chr3 30786946 30787241 -196737337 - AluSx SINE Alu -16 296 1 1860 135 20 7 chr3 30787245 30787542 -196737036 - AluSx SINE Alu -11 301 1 2130 86 24 0 chr3 30788371 30788540 -196736038 - AluY SINE Alu -12 299 119 300 27 0 0 chr3 30788540 30788577 -196736001 + (TG)n Simple_repeat Simple_repeat 2 38 0 2130 86 24 0 chr3 30788577 30788699 -196735879 - AluY SINE Alu -192 119 1 501 292 49 38 chr3 30789636 30789821 -196734757 + MIR SINE MIR 7 193 -69 543 309 69 18 chr3 30790066 30790283 -196734295 - MIR SINE MIR -27 235 8 484 339 7 18 chr3 30791575 30791936 -196732642 + C-rich Low_complexity Low_complexity 1 356 0 353 214 69 28 chr3 30793007 30793152 -196731426 + AluJb SINE Alu 8 158 -144 2050 114 0 16 chr3 30793454 30793761 -196730817 + AluSx SINE Alu 1 302 -10 1253 93 88 5 chr3 30794685 30794879 -196729699 - AluSg SINE Alu -88 222 13 2053 103 0 0 chr3 30796317 30796589 -196727989 + AluY SINE Alu 16 287 -24 1756 103 4 4 chr3 30796589 30796840 -196727738 + AluY SINE Alu 50 301 -10 239 294 35 35 chr3 30796851 30797082 -196727496 + L1 LINE L1 4442 4672 -1474 28835 33 8 0 chr3 30847462 30851719 -196672859 + L1PA4 LINE L1 1860 6152 -3 198 231 115 64 chr3 30851907 30851985 -196672593 - MIR SINE MIR -83 125 44 180 286 0 41 chr3 30852124 30852173 -196672405 - L3b LINE CR1 -25 1558 1512 478 314 49 29 chr3 30852399 30852644 -196671934 + MER102b DNA MER1_type 89 338 -3 183 100 0 0 chr3 30852724 30852754 -196671824 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 9857 58 3 1 chr3 30853273 30854530 -196670048 - L1P LINE L1 -4264 1882 623 769 52 0 0 chr3 30854528 30854625 -196669953 - L1P LINE L1 -6048 98 2 * 204 284 172 37 chr3 30855288 30855422 -196669156 - MIR3 SINE MIR -2 206 55 532 276 24 0 chr3 30855458 30855581 -196668997 - MER58A DNA MER1_type 0 126 1 3131 134 60 6 chr3 30855659 30856159 -196668419 + MER1A DNA MER1_type 1 527 0 4108 162 151 82 chr3 30857091 30858372 -196666206 - Charlie1a DNA MER1_type -82 1373 5 845 223 0 0 chr3 30858444 30858610 -196665968 - FRAM SINE Alu -7 169 4 200 109 0 43 chr3 30859960 30860006 -196664572 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 556 236 0 24 chr3 30860598 30860725 -196663853 - FLAM_A SINE Alu -9 124 1 365 282 0 0 chr3 30861085 30861163 -196663415 - L2 LINE L2 -7 3265 3188 376 223 182 104 chr3 30861395 30861479 -196663099 - MIR SINE MIR -19 243 167 2293 93 3 0 chr3 30861479 30861768 -196662810 - AluSq SINE Alu -23 290 1 376 223 182 104 chr3 30861768 30861903 -196662675 - MIR SINE MIR -95 167 7 1720 167 20 29 chr3 30862281 30862420 -196662158 + AluSx SINE Alu 1 140 -172 2402 66 0 0 chr3 30862420 30862708 -196661870 + AluY SINE Alu 21 308 -3 1720 167 20 29 chr3 30862708 30862874 -196661704 + AluSx SINE Alu 140 303 -9 21 36 0 0 chr3 30863082 30863110 -196661468 + AT_rich Low_complexity Low_complexity 1 28 0 309 307 83 73 chr3 30863268 30863460 -196661118 + MER91A DNA MER1_type 2 195 -1 1785 142 0 50 chr3 30863469 30863787 -196660791 - AluJo SINE Alu -10 302 1 33 56 0 0 chr3 30863806 30863860 -196660718 + AT_rich Low_complexity Low_complexity 1 54 0 576 195 0 31 chr3 30863951 30864079 -196660499 + FLAM_A SINE Alu 13 136 -6 375 232 246 7 chr3 30864083 30864221 -196660357 + MER5A DNA MER1_type 19 189 0 240 330 0 0 chr3 30865240 30865328 -196659250 - L1MC5 LINE L1 -71 7890 7803 1759 154 29 4 chr3 30865411 30865691 -196658887 + L1MA3 LINE L1 17 303 -7262 8125 185 43 29 chr3 30865800 30868561 -196656017 + L1MA3 LINE L1 3709 6430 -1294 1466 171 57 18 chr3 30868561 30868842 -196655736 + AluSx SINE Alu 1 292 -20 8125 185 43 29 chr3 30868842 30869571 -196655007 + L1MA3 LINE L1 6430 7444 -280 183 42 0 0 chr3 30869571 30869595 -196654983 + (TA)n Simple_repeat Simple_repeat 2 25 0 8125 185 43 29 chr3 30869595 30869873 -196654705 + L1MA3 LINE L1 7444 7717 -7 180 77 0 0 chr3 30870029 30870055 -196654523 + (TAA)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr3 30870235 30870273 -196654305 + AT_rich Low_complexity Low_complexity 1 38 0 605 213 122 6 chr3 30870620 30870784 -196653794 - MER5A DNA MER1_type 0 189 7 1527 145 35 91 chr3 30870787 30871105 -196653473 - AluJb SINE Alu -12 300 1 1526 254 80 3 chr3 30872054 30872443 -196652135 + MLT1G1 LTR MaLR 167 585 -10 603 184 0 0 chr3 30872598 30872701 -196651877 + AluJb SINE Alu 194 296 -16 1622 179 7 49 chr3 30873033 30873341 -196651237 + AluJo SINE Alu 1 295 -17 1040 324 135 4 chr3 30873883 30874356 -196650222 + L3 LINE CR1 1028 1562 -15 1804 147 28 7 chr3 30875165 30875450 -196649128 + AluSx SINE Alu 1 291 -21 849 296 75 13 chr3 30876500 30876885 -196647693 + LTR16B LTR ERVL 56 464 0 5268 139 51 68 chr3 30876904 30877258 -196647320 + Ricksha_a DNA DNA 1 360 -2901 330 183 70 0 chr3 30877258 30877329 -196647249 - FRAM/FAM SINE Alu -92 83 8 5268 139 51 68 chr3 30877329 30878141 -196646437 + Ricksha_a DNA DNA 360 1177 -14 458 123 49 0 chr3 30878406 30878487 -196646091 + L1MB8 LINE L1 6089 6173 -5 1883 152 10 20 chr3 30878594 30878897 -196645681 + AluSx SINE Alu 1 300 -12 521 307 40 31 chr3 30879405 30879633 -196644945 - MIR SINE MIR -2 260 31 1668 186 158 47 chr3 30880104 30880592 -196643986 - MLT1F LTR MaLR 0 542 1 259 325 52 0 chr3 30880636 30880713 -196643865 + MER91C DNA MER1_type 58 138 -2 867 269 53 16 chr3 30881489 30881734 -196642844 + MIR SINE MIR 6 259 -3 1127 238 77 62 chr3 30881970 30882499 -196642079 - L2 LINE L2 -265 3007 2475 388 206 165 0 chr3 30882512 30882609 -196641969 + L2 LINE L2 3200 3312 -1 30 69 0 0 chr3 30883602 30883660 -196640918 + GC_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr3 30883765 30883794 -196640784 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 30883879 30883907 -196640671 + GC_rich Low_complexity Low_complexity 1 28 0 2159 133 0 3 chr3 30884375 30884676 -196639902 - AluJb SINE Alu -12 300 1 2130 92 11 0 chr3 30886022 30886303 -196638275 + AluSp SINE Alu 16 299 -14 21 95 0 0 chr3 30886428 30886491 -196638087 + AT_rich Low_complexity Low_complexity 1 63 0 890 202 6 27 chr3 30886540 30886723 -196637855 + AluJo SINE Alu 34 212 -100 191 330 41 21 chr3 30886797 30886894 -196637684 - L2 LINE L2 -1 3271 3173 1217 176 30 102 chr3 30886984 30887126 -196637452 + AluJb SINE Alu 1 113 -199 2384 69 0 47 chr3 30887126 30887446 -196637132 + AluY SINE Alu 1 305 -6 1217 176 30 102 chr3 30887446 30887598 -196636980 + AluJb SINE Alu 113 274 -38 244 325 305 0 chr3 30888234 30888385 -196636193 + MIR SINE MIR 50 246 -16 2330 109 0 0 chr3 30890553 30890865 -196633713 - AluSx SINE Alu 0 312 1 1423 179 10 76 chr3 30891437 30891739 -196632839 + AluJo SINE Alu 1 282 -30 1996 245 190 18 chr3 30891861 30892689 -196631889 - L2 LINE L2 -19 3294 2258 26 0 0 0 chr3 30892708 30892734 -196631844 + AT_rich Low_complexity Low_complexity 1 26 0 211 200 92 46 chr3 30893906 30893971 -196630607 + L2 LINE L2 3238 3305 -8 1423 180 27 14 chr3 30894097 30894392 -196630186 + L1MB7 LINE L1 5867 6165 -19 1739 161 42 25 chr3 30894728 30895082 -196629496 + MER46B DNA MER2_type 2 236 0 25 65 0 0 chr3 30895979 30896025 -196628553 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 30896079 30896102 -196628476 + AT_rich Low_complexity Low_complexity 1 23 0 663 153 181 0 chr3 30896455 30896599 -196627979 - MIR SINE MIR -3 259 90 1133 255 177 60 chr3 30897504 30898664 -196625914 + L2 LINE L2 2006 3310 -3 220 312 21 32 chr3 30900078 30900171 -196624407 + MIR SINE MIR 137 228 -34 1770 176 7 183 chr3 30900571 30901243 -196623335 - MLT2B3 LTR ERVL 0 554 1 505 190 141 0 chr3 30901370 30901512 -196623066 - MLT1F1 LTR MaLR 0 542 381 300 171 91 11 chr3 30901522 30901610 -196622968 + L1MA9 LINE L1 6218 6312 0 1161 244 34 93 chr3 30901611 30902050 -196622528 - MLT1F1 LTR MaLR -154 413 1 652 168 8 32 chr3 30902515 30902640 -196621938 + FLAM_C SINE Alu 2 123 -10 4715 49 3 23 chr3 30902776 30903385 -196621193 - L1PA5 LINE L1 -4 6150 5554 326 263 136 25 chr3 30903442 30903560 -196621018 + MIR3 SINE MIR 38 168 -40 25 31 0 0 chr3 30903632 30903664 -196620914 + AT_rich Low_complexity Low_complexity 1 32 0 875 96 103 0 chr3 30903665 30903801 -196620777 - L1MA2 LINE L1 -11 6293 6144 2673 122 39 2 chr3 30903802 30904213 -196620365 + MSTA LTR MaLR 3 428 0 1335 143 104 11 chr3 30904213 30904500 -196620078 - L1MA3 LINE L1 -49 6256 5943 * 19788 143 46 49 chr3 30904495 30905299 -196619279 - L1M4 LINE L1 -2952 4613 3808 2206 112 7 0 chr3 30905299 30905595 -196618983 - AluSc SINE Alu -11 298 1 19788 143 46 49 chr3 30905595 30906045 -196618533 - L1M4 LINE L1 -3757 3808 3358 1826 179 0 3 chr3 30906045 30906342 -196618236 - AluJb SINE Alu -16 296 1 19788 143 46 49 chr3 30906342 30909382 -196615196 - L1M4 LINE L1 -4207 3358 225 2110 117 57 23 chr3 30909382 30909734 -196614844 - THE1B LTR MaLR 0 364 1 19788 143 46 49 chr3 30909734 30909952 -196614626 - L1M4 LINE L1 -7340 225 8 25 0 0 0 chr3 30910062 30910087 -196614491 + AT_rich Low_complexity Low_complexity 1 25 0 875 132 0 0 chr3 30910095 30910216 -196614362 - AluJb SINE Alu -32 280 160 2110 114 35 67 chr3 30910364 30910740 -196613838 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr3 30911101 30911132 -196613446 + AT_rich Low_complexity Low_complexity 1 31 0 180 77 0 0 chr3 30911147 30911173 -196613405 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 326 256 0 12 chr3 30911355 30911441 -196613137 - MIR SINE MIR -14 248 164 1911 134 62 7 chr3 30911461 30911753 -196612825 + AluSx SINE Alu 3 310 -2 728 145 357 21 chr3 30912288 30912529 -196612049 - L1MB8 LINE L1 -5 6173 5852 403 217 17 100 chr3 30912590 30912770 -196611808 - L1M4b LINE L1 -5634 1225 1061 1089 173 51 101 chr3 30912777 30913205 -196611373 - MLT1C LTR MaLR -1 466 3 537 332 63 10 chr3 30913470 30913771 -196610807 - L1M4b LINE L1 -6542 317 1 247 235 35 96 chr3 30914504 30914619 -196609959 - MIR3 SINE MIR -18 190 83 22 0 0 0 chr3 30914818 30914840 -196609738 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 30914919 30914941 -196609637 + AT_rich Low_complexity Low_complexity 1 22 0 320 216 72 84 chr3 30915008 30915175 -196609403 - MIR SINE MIR -6 256 92 942 219 54 0 chr3 30915366 30915590 -196608988 + MER46A DNA MER2_type 1 236 0 278 345 104 49 chr3 30915619 30915906 -196608672 + L2 LINE L2 2970 3272 0 2162 115 3 0 chr3 30917975 30918280 -196606298 - AluSx SINE Alu -6 306 1 3507 57 7 0 chr3 30918585 30919040 -196605538 - L1PA5 LINE L1 -1 6153 5696 1760 162 10 33 chr3 30920015 30920317 -196604261 - AluJb SINE Alu -15 297 3 986 204 0 0 chr3 30920743 30920915 -196603663 + FAM SINE Alu 1 172 -3 664 192 23 8 chr3 30922456 30922586 -196601992 - FLAM_A SINE Alu 0 133 2 2539 74 0 0 chr3 30923529 30923840 -196600738 + AluY SINE Alu 1 311 0 244 250 0 0 chr3 30924372 30924416 -196600162 + Alu SINE Alu 141 184 -116 490 115 103 11 chr3 30924416 30924503 -196600075 + L1PA8 LINE L1 6078 6172 0 25 83 0 0 chr3 30925158 30925218 -196599360 + AT_rich Low_complexity Low_complexity 1 60 0 1432 172 84 0 chr3 30925460 30925710 -196598868 + AluJb SINE Alu 13 283 -29 1860 155 10 16 chr3 30925738 30926048 -196598530 + AluJb SINE Alu 1 308 -4 4526 159 31 42 chr3 30926229 30927202 -196597376 - L1MA9 LINE L1 -4 6308 5339 1483 194 17 24 chr3 30927202 30927495 -196597083 - AluJo SINE Alu -19 293 3 4526 159 31 42 chr3 30927495 30927829 -196596749 - L1MA9 LINE L1 -973 5339 5003 434 260 158 25 chr3 30928909 30929105 -196595473 - MIR SINE MIR 0 262 41 258 143 0 0 chr3 30929252 30929301 -196595277 + (A)n Simple_repeat Simple_repeat 1 49 0 181 301 157 53 chr3 30929773 30930188 -196594390 - L2 LINE L2 -1297 2017 1560 7224 35 5 0 chr3 30930638 30931567 -196593011 - L1P LINE L1 -3570 2576 1643 21428 30 2 0 chr3 30931567 30934286 -196590292 + L1P LINE L1 2584 5307 -839 189 0 0 0 chr3 30935070 30935091 -196589487 + (T)n Simple_repeat Simple_repeat 1 21 0 3690 95 147 132 chr3 30936078 30936888 -196587690 - LTR12 LTR ERV1 0 826 5 1918 192 75 24 chr3 30936904 30937477 -196587101 - pTR5 LTR ERV1 -1094 1344 743 1642 218 71 51 chr3 30937536 30937588 -196586990 - MLT2B1 LTR ERVL 0 520 470 189 0 0 0 chr3 30937588 30937609 -196586969 + (GA)n Simple_repeat Simple_repeat 2 22 0 1642 218 71 51 chr3 30937609 30938066 -196586512 - MLT2B1 LTR ERVL -50 470 1 771 159 115 50 chr3 30938112 30938175 -196586403 + MER6B DNA MER2_type 2 59 -806 2351 44 44 14 chr3 30938175 30938471 -196586107 + AluY SINE Alu 1 305 -6 771 159 115 50 chr3 30938471 30938589 -196585989 + MER6B DNA MER2_type 59 195 -15 745 70 0 20 chr3 30938723 30938823 -196585755 + HY3 scRNA scRNA 1 98 -3 201 138 0 0 chr3 30938823 30938852 -196585726 + (TATG)n Simple_repeat Simple_repeat 3 31 0 206 281 31 31 chr3 30939196 30939260 -196585318 + polypyrimidine Low_complexity Low_complexity 2 65 0 1533 142 36 44 chr3 30939309 30939583 -196584995 - AluJb SINE Alu -40 272 1 306 283 42 60 chr3 30939644 30939810 -196584768 - L1ME LINE L1 -390 5731 5569 189 300 0 0 chr3 30939898 30939948 -196584630 - MIR SINE MIR -73 189 140 * 457 299 148 42 chr3 30939947 30940510 -196584068 - L2 LINE L2 -10 3303 2668 597 75 0 0 chr3 30941030 30941110 -196583468 - AluY SINE Alu -230 80 1 227 200 20 0 chr3 30941164 30941214 -196583364 - MIR SINE MIR -30 232 182 420 319 93 0 chr3 30941227 30941431 -196583147 - MIR SINE MIR -38 224 2 1563 139 41 30 chr3 30942019 30942285 -196582293 - AluJo SINE Alu -19 293 25 2185 113 0 7 chr3 30943649 30943950 -196580628 - AluSx SINE Alu -13 299 1 183 352 68 0 chr3 30944143 30944231 -196580347 - L2 LINE L2 -8 3264 3171 311 309 36 9 chr3 30944511 30944621 -196579957 + L1ME LINE L1 5320 5432 -730 247 357 16 0 chr3 30945495 30945624 -196578954 + CT-rich Low_complexity Low_complexity 2 132 0 203 274 0 32 chr3 30949568 30949630 -196574948 + L2 LINE L2 3231 3290 -23 411 139 0 38 chr3 30949632 30949650 -196574928 - AluJ/FRAM SINE Alu -6 306 289 956 207 13 17 chr3 30949650 30949882 -196574696 - L1MB7 LINE L1 -9 6175 5945 411 139 0 38 chr3 30949882 30949942 -196574636 - AluJ/FRAM SINE Alu -23 289 231 343 156 300 11 chr3 30949942 30950032 -196574546 - FLAM_C SINE Alu -2 131 16 815 121 18 36 chr3 30950037 30950202 -196574376 - L1MB7 LINE L1 -211 5967 5806 611 153 89 25 chr3 30950309 30950466 -196574112 - L1MB7 LINE L1 -361 5823 5657 22 0 0 0 chr3 30952845 30952867 -196571711 + AT_rich Low_complexity Low_complexity 1 22 0 206 266 0 47 chr3 30952995 30953059 -196571519 + L2 LINE L2 3207 3267 -46 569 263 93 76 chr3 30953268 30953358 -196571220 + MIR SINE MIR 5 92 -170 1719 151 55 17 chr3 30953358 30953649 -196570929 - AluJo SINE Alu -10 302 1 569 263 93 76 chr3 30953649 30953794 -196570784 + MIR SINE MIR 92 244 -18 244 256 13 0 chr3 30954700 30954778 -196569800 + HsTC2 DNA Tc2 1 79 -1819 22 0 0 0 chr3 30954914 30954936 -196569642 + AT_rich Low_complexity Low_complexity 1 22 0 1424 197 27 24 chr3 30956216 30956511 -196568067 - AluJo SINE Alu -6 296 1 384 262 142 62 chr3 30956779 30957004 -196567574 - HAL1 LINE L1 -84 2423 2181 201 310 42 14 chr3 30957951 30958022 -196566556 - MIR3 SINE MIR -26 182 110 24 32 0 0 chr3 30960521 30960552 -196564026 + AT_rich Low_complexity Low_complexity 1 31 0 1038 172 86 75 chr3 30963251 30963594 -196560984 - L1MB7 LINE L1 -8 6176 5836 1689 108 0 0 chr3 30963594 30963817 -196560761 - AluSq SINE Alu -15 298 76 1038 172 86 75 chr3 30963817 30963843 -196560735 - L1MB7 LINE L1 -348 5836 5812 3226 153 73 28 chr3 30963848 30964318 -196560260 - L1MA4 LINE L1 -2 6169 5610 2026 140 45 25 chr3 30964318 30964675 -196559903 + THE1B LTR MaLR 1 364 0 3226 153 73 28 chr3 30964675 30964976 -196559602 - L1MA4 LINE L1 -561 5610 5324 1072 144 18 6 chr3 30964984 30965144 -196559434 - AluSg/x SINE Alu -16 294 130 2142 132 13 0 chr3 30965144 30965447 -196559131 - AluSx SINE Alu -5 307 1 3979 179 44 32 chr3 30965457 30966471 -196558107 - L1MA4 LINE L1 -825 5321 4296 3441 197 26 33 chr3 30966701 30967601 -196556977 - L1 LINE L1 -1119 5027 4135 2871 193 60 21 chr3 30967602 30968695 -196555883 - L1MB7 LINE L1 -343 5823 4677 2162 128 3 0 chr3 30968803 30969107 -196555471 - AluSx SINE Alu -7 305 1 432 200 0 67 chr3 30969378 30969468 -196555110 - AluS SINE Alu -228 84 1 565 244 14 156 chr3 30972100 30972222 -196552356 - MIR SINE MIR -6 256 193 1376 98 0 10 chr3 30972222 30972425 -196552153 - L1PB1 LINE L1 -1 6150 5950 565 244 14 156 chr3 30972425 30972577 -196552001 - MIR SINE MIR -69 193 21 850 201 111 5 chr3 30972634 30972823 -196551755 + MER3 DNA MER1_type 1 209 0 196 300 88 25 chr3 30973217 30973297 -196551281 - MIR SINE MIR -84 124 40 305 349 104 52 chr3 30973398 30973429 -196551149 + L3 LINE CR1 1168 1196 -381 2334 101 0 3 chr3 30973429 30973736 -196550842 + AluSq SINE Alu 1 306 -7 305 349 104 52 chr3 30973736 30974051 -196550527 + L3 LINE CR1 1196 1532 -45 3147 209 50 71 chr3 30974392 30975240 -196549338 - MER21B LTR ERV1 -30 833 4 369 330 95 23 chr3 30977558 30977779 -196546799 + MIR SINE MIR 20 256 -6 1679 167 3 24 chr3 30978047 30978334 -196546244 - AluJo SINE Alu -31 281 1 1532 214 62 8 chr3 30978490 30978845 -196545733 + MLT1A2 LTR MaLR 1 374 0 197 194 0 119 chr3 30978959 30979026 -196545552 - L2 LINE L2 0 3272 3214 1249 286 49 22 chr3 30979718 30980377 -196544201 + LTR51 LTR ERV1 1 851 -72 22 35 0 0 chr3 30980712 30980741 -196543837 + AT_rich Low_complexity Low_complexity 1 29 0 319 256 47 0 chr3 30981901 30981987 -196542591 + L2 LINE L2 3220 3309 -4 30 27 0 0 chr3 30982954 30982991 -196541587 + AT_rich Low_complexity Low_complexity 1 37 0 200 259 24 47 chr3 30984465 30984550 -196540028 + MIR3 SINE MIR 123 205 -3 1554 154 109 27 chr3 30984554 30984892 -196539686 + MER47A DNA MER2_type 1 366 0 2323 90 3 0 chr3 30984931 30985230 -196539348 - AluSx SINE Alu -12 300 1 252 172 0 0 chr3 30987279 30987337 -196537241 - L1M4 LINE L1 -3834 2312 2255 1088 236 86 72 chr3 30987529 30988148 -196536430 - L2 LINE L2 -6 3307 2677 193 338 15 0 chr3 30988217 30988285 -196536293 + MIR3 SINE MIR 133 201 -7 1467 171 80 11 chr3 30988420 30988695 -196535883 - AluJb SINE Alu -16 296 3 405 0 0 0 chr3 30988943 30988988 -196535590 + (TG)n Simple_repeat Simple_repeat 1 45 0 283 392 20 14 chr3 30990078 30990226 -196534352 - MIR SINE MIR -94 168 20 435 19 0 0 chr3 30990405 30990458 -196534120 - MADE1 DNA Mariner 0 80 28 1771 157 3 20 chr3 30991809 30992102 -196532476 - AluJo SINE Alu -24 288 1 32 0 0 0 chr3 30992385 30992417 -196532161 + AT_rich Low_complexity Low_complexity 1 32 0 2008 140 3 3 chr3 30993126 30993426 -196531152 + AluJb SINE Alu 1 300 -12 476 341 115 69 chr3 30993602 30994282 -196530296 - L2 LINE L2 0 3272 2568 4557 206 102 34 chr3 30994505 30995815 -196528763 + L1MC4a LINE L1 6404 7803 -5 185 333 16 56 chr3 30996289 30996415 -196528163 - MIR SINE MIR -110 152 32 418 261 183 7 chr3 30997515 30997668 -196526910 - MIR SINE MIR 0 262 83 1175 171 50 0 chr3 30998455 30998654 -196525924 - AluJb SINE Alu -15 297 89 2029 127 14 0 chr3 30999561 30999853 -196524725 + AluSx SINE Alu 1 296 -16 1093 201 149 19 chr3 30999918 31000226 -196524352 - L1ME3A LINE L1 -80 6090 5743 551 204 24 108 chr3 31000896 31001063 -196523515 + AluJo SINE Alu 58 210 -102 24 0 0 0 chr3 31001085 31001109 -196523469 + AT_rich Low_complexity Low_complexity 1 24 0 202 196 65 0 chr3 31001115 31001161 -196523417 + L2 LINE L2 3224 3272 0 4924 54 2 0 chr3 31003372 31003980 -196520598 + L1PA6 LINE L1 5543 6151 -3 216 0 0 0 chr3 31004113 31004137 -196520441 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 367 22 0 0 chr3 31004239 31004285 -196520293 + L1PA6 LINE L1 6107 6152 -2 35609 43 2 3 chr3 31005512 31009931 -196514647 + L1P LINE L1 3 4418 -1728 752 189 24 0 chr3 31010031 31010195 -196514383 - L1P LINE L1 -844 5302 5135 362 316 47 23 chr3 31010514 31010685 -196513893 + L2 LINE L2 3138 3312 -1 33 0 0 0 chr3 31011283 31011316 -196513262 + AT_rich Low_complexity Low_complexity 1 33 0 197 321 0 0 chr3 31012050 31012106 -196512472 + MIR SINE MIR 49 104 -158 22 35 0 0 chr3 31012384 31012413 -196512165 + AT_rich Low_complexity Low_complexity 1 29 0 1694 166 28 7 chr3 31012892 31013176 -196511402 + AluJb SINE Alu 1 290 -22 186 103 0 0 chr3 31013600 31013629 -196510949 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 295 160 19 chr3 31013848 31014004 -196510574 + MLT1I LTR MaLR 44 221 -188 270 232 64 56 chr3 31014005 31014130 -196510448 + MLT1J2 LTR MaLR 272 397 -53 * 410 148 0 74 chr3 31014128 31014209 -196510369 - Charlie3 DNA MER1_type -8 2702 2628 305 209 15 0 chr3 31014212 31014279 -196510299 + MLT1I LTR MaLR 340 407 -2 7304 31 10 0 chr3 31015639 31017276 -196507302 - L1PA3 LINE L1 -3 6152 4503 443 151 32 54 chr3 31018011 31018104 -196506474 - Tigger4(Zombi) DNA MER2_type 0 2731 2641 236 288 72 36 chr3 31018475 31018586 -196505992 - MIR SINE MIR -62 146 32 4925 226 35 13 chr3 31018952 31020220 -196504358 + L1P LINE L1 2437 3731 -2415 5290 136 19 1 chr3 31020399 31021232 -196503346 + L1PB2 LINE L1 5302 6149 -2 429 365 23 8 chr3 31021470 31021733 -196502845 + L1PA12 LINE L1 2 268 -7313 2569 247 10 22 chr3 31022295 31022988 -196501590 + L1P LINE L1 1730 2414 -3732 1714 187 0 17 chr3 31025140 31025434 -196499144 - AluJb SINE Alu -23 289 1 307 313 30 0 chr3 31025841 31025940 -196498638 + L1ME3 LINE L1 6004 6105 -57 2224 109 3 0 chr3 31025941 31026234 -196498344 + AluSx SINE Alu 3 296 -16 258 349 143 0 chr3 31027205 31027331 -196497247 + MIR SINE MIR 118 261 -1 3210 189 118 24 chr3 31027625 31028377 -196496201 - MER21B LTR ERV1 -24 839 17 3755 170 81 1 chr3 31028827 31029533 -196495045 - L1PA16 LINE L1 -2 6164 5403 * 6253 193 14 7 chr3 31029531 31030783 -196493795 - L1PA16 LINE L1 -1192 4954 3694 33000 34 4 0 chr3 31030952 31035656 -196488922 - L1PA3 LINE L1 -84 6071 1356 278 207 164 69 chr3 31037026 31037142 -196487436 - MER94 DNA DNA -3 131 5 556 203 32 16 chr3 31038119 31038242 -196486336 - FLAM_A SINE Alu -4 138 14 452 273 200 19 chr3 31040955 31041160 -196483418 + MIR SINE MIR 21 262 0 216 0 0 0 chr3 31041559 31041583 -196482995 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr3 31041643 31041672 -196482906 + AT_rich Low_complexity Low_complexity 1 29 0 294 254 127 26 chr3 31041943 31042132 -196482446 - MER113 DNA MER1_type? -313 208 1 213 77 0 51 chr3 31042542 31042566 -196482012 + (TTTA)n Simple_repeat Simple_repeat 3 26 -13 3718 16 0 0 chr3 31042566 31042993 -196481585 - L1PA2 LINE L1 0 6155 5729 213 77 0 51 chr3 31042993 31043007 -196481571 + (TTTA)n Simple_repeat Simple_repeat 26 39 0 384 316 198 4 chr3 31043044 31043281 -196481297 - L2 LINE L2 -218 3095 2813 1469 180 10 27 chr3 31043552 31043847 -196480731 - AluJo SINE Alu -22 290 1 2181 119 3 0 chr3 31045501 31045803 -196478775 - AluSx SINE Alu -9 303 1 194 346 97 30 chr3 31046233 31046470 -196478108 - L2 LINE L2 -467 2847 2595 364 359 65 0 chr3 31046568 31046738 -196477840 - L2 LINE L2 -955 2359 2179 819 224 42 0 chr3 31047319 31047484 -196477094 - AluJo/FRAM SINE Alu -7 305 134 1886 157 0 3 chr3 31047485 31047785 -196476793 - AluJb SINE Alu -13 299 1 2158 105 10 7 chr3 31047857 31048161 -196476417 - AluSg SINE Alu -5 305 1 1014 181 6 0 chr3 31048248 31048419 -196476159 - AluSg/x SINE Alu -8 302 131 1746 168 83 6 chr3 31049442 31049781 -196474797 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr3 31051979 31052014 -196472564 + AT_rich Low_complexity Low_complexity 1 35 0 2387 88 10 0 chr3 31052043 31052349 -196472229 + AluSg SINE Alu 1 309 -1 1001 219 55 52 chr3 31053435 31054144 -196470434 + LTR1B LTR ERV1 1 824 -2 518 269 35 51 chr3 31054307 31054504 -196470074 - MIR SINE MIR -1 261 68 28 29 0 0 chr3 31054889 31054924 -196469654 + AT_rich Low_complexity Low_complexity 1 35 0 191 196 174 0 chr3 31055582 31055628 -196468950 - L2 LINE L2 0 3272 3219 472 242 18 147 chr3 31055693 31055928 -196468650 + MIR SINE MIR 19 219 -43 305 315 195 31 chr3 31056093 31056605 -196467973 - L2 LINE L2 -205 3067 2454 285 350 114 24 chr3 31056619 31056715 -196467863 - L2 LINE L2 -2940 374 288 922 222 5 5 chr3 31056715 31056904 -196467674 + MER5A DNA MER1_type 1 189 0 285 350 114 24 chr3 31056904 31057000 -196467578 - L2 LINE L2 -3026 288 202 1291 223 75 6 chr3 31057000 31057318 -196467260 + MER58B DNA MER1_type 2 341 0 285 350 114 24 chr3 31057318 31057413 -196467165 - L2 LINE L2 -3112 202 60 226 284 11 57 chr3 31057779 31057867 -196466711 + L1ME LINE L1 2 85 -5985 443 181 0 67 chr3 31059622 31059815 -196464763 + (TA)n Simple_repeat Simple_repeat 1 180 0 822 213 63 86 chr3 31059857 31060125 -196464453 + MIR SINE MIR 1 262 0 901 252 56 46 chr3 31060729 31061102 -196463476 - L1ME3A LINE L1 -51 6119 5743 2291 106 0 0 chr3 31061349 31061652 -196462926 + AluSx SINE Alu 1 303 -9 2062 172 22 101 chr3 31062271 31063003 -196461575 - MER44D DNA MER2_type -3 602 2 779 168 0 0 chr3 31063658 31063789 -196460789 - FLAM_A SINE Alu -2 131 1 315 0 0 0 chr3 31063928 31063963 -196460615 + (CA)n Simple_repeat Simple_repeat 2 36 0 212 200 18 0 chr3 31064090 31064145 -196460433 + CT-rich Low_complexity Low_complexity 2 57 0 758 317 124 20 chr3 31064146 31064588 -196459990 - L2 LINE L2 -1 3312 2825 312 275 127 65 chr3 31064658 31064887 -196459691 - MIR SINE MIR -15 247 5 986 150 0 7 chr3 31065015 31065168 -196459410 - AluSx SINE Alu -26 284 133 2331 88 13 0 chr3 31065169 31065474 -196459104 - AluSx SINE Alu -3 309 1 2003 111 56 10 chr3 31066859 31067147 -196457431 + AluSx SINE Alu 1 301 -11 352 325 100 0 chr3 31068511 31068671 -196455907 + MIR SINE MIR 49 224 -38 229 294 59 0 chr3 31068691 31068776 -196455802 - MIR3 SINE MIR -116 92 3 408 281 101 30 chr3 31069610 31069809 -196454769 + MIR SINE MIR 1 213 -49 522 103 0 0 chr3 31070933 31071011 -196453567 + (TG)n Simple_repeat Simple_repeat 2 79 0 1761 210 32 41 chr3 31073503 31073969 -196450609 - MLT1C LTR MaLR 0 467 6 226 356 11 0 chr3 31075549 31075636 -196448942 + MIR SINE MIR 60 147 -115 851 211 23 0 chr3 31076592 31076763 -196447815 + MER5A DNA MER1_type 1 175 -14 1574 50 0 0 chr3 31076882 31077081 -196447497 + L1PA4 LINE L1 5954 6152 -3 399 344 131 26 chr3 31077310 31077729 -196446849 + L2 LINE L2 2810 3272 0 905 129 0 0 chr3 31078308 31078440 -196446138 - MSTA LTR MaLR -296 132 1 1673 203 58 0 chr3 31078523 31078849 -196445729 + MLT1A1 LTR MaLR 19 363 -2 615 225 88 50 chr3 31079230 31079470 -196445108 - MER112 DNA MER1_type -4 256 8 4016 48 2 2 chr3 31079620 31080120 -196444458 - L1PA7 LINE L1 -1 6153 5654 4129 185 13 14 chr3 31080120 31080996 -196443582 - L1P LINE L1 -4190 1956 1082 226 115 33 16 chr3 31081190 31081251 -196443327 + C-rich Low_complexity Low_complexity 1 62 0 12513 92 18 31 chr3 31081283 31083249 -196441329 - L1P3 LINE L1 -4483 1978 11 584 81 0 23 chr3 31083249 31083335 -196441243 - AluSx SINE Alu -166 146 63 1528 185 0 50 chr3 31083711 31084013 -196440565 - AluJo SINE Alu -15 297 11 185 167 0 0 chr3 31084278 31084308 -196440270 + MER5B DNA MER1_type 25 54 -124 432 341 8 0 chr3 31084406 31084529 -196440049 + L2 LINE L2 3149 3272 0 332 271 47 54 chr3 31084897 31085026 -196439552 + L2 LINE L2 3176 3303 -10 224 337 0 24 chr3 31085080 31085163 -196439415 + MIR3 SINE MIR 127 207 -1 246 343 148 50 chr3 31085648 31085925 -196438653 + L3 LINE CR1 1230 1533 -44 2197 134 40 13 chr3 31086061 31086224 -196438354 + L1PB4 LINE L1 5699 5856 -300 1776 98 8 4 chr3 31086224 31086460 -196438118 - AluSq SINE Alu -76 237 1 2197 134 40 13 chr3 31086460 31086668 -196437910 + L1PB4 LINE L1 5856 6080 -76 36 0 0 0 chr3 31086846 31086882 -196437696 + AT_rich Low_complexity Low_complexity 1 36 0 208 304 62 36 chr3 31086973 31087085 -196437493 - L2 LINE L2 -178 3135 3021 435 231 138 50 chr3 31087087 31087247 -196437331 - Charlie8 DNA MER1_type -2152 265 92 676 264 205 23 chr3 31087348 31087651 -196436927 + L3 LINE CR1 1216 1573 -4 474 206 109 59 chr3 31089739 31089977 -196434601 - L1MC5 LINE L1 -48 7913 7664 294 315 34 55 chr3 31090013 31090159 -196434419 + MIR3 SINE MIR 49 191 -17 1357 190 125 31 chr3 31090165 31090486 -196434092 + L1MCa LINE L1 1 351 -6075 * 4728 160 56 22 chr3 31090482 31091887 -196432691 + L1MCa LINE L1 696 2241 -4185 1336 195 0 38 chr3 31091891 31092158 -196432420 + AluJb SINE Alu 1 257 -55 5347 246 44 17 chr3 31092158 31093446 -196431132 + L1MCa LINE L1 2244 3611 -2815 1174 168 188 8 chr3 31093446 31093702 -196430876 + AluJb SINE Alu 1 302 0 5347 246 44 17 chr3 31093702 31094383 -196430195 + L1MCa LINE L1 3611 4272 -2154 859 249 25 8 chr3 31094399 31094636 -196429942 + L1MCa LINE L1 4393 4633 -1793 1015 166 0 0 chr3 31094642 31094799 -196429779 - AluSg/x SINE Alu -19 291 135 257 318 30 0 chr3 31094905 31094971 -196429607 + MIR SINE MIR 12 79 -183 234 258 61 0 chr3 31094994 31095060 -196429518 - L1M4 LINE L1 -1911 4235 4166 739 190 51 0 chr3 31095094 31095252 -196429326 + MIR SINE MIR 97 262 0 1624 191 33 7 chr3 31095271 31095575 -196429003 - AluJo SINE Alu 0 312 1 274 315 98 71 chr3 31095595 31095779 -196428799 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr3 31097219 31097240 -196427338 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr3 31097585 31097655 -196426923 + AT_rich Low_complexity Low_complexity 1 70 0 330 276 0 35 chr3 31097868 31097955 -196426623 - L2 LINE L2 -1 3312 3229 24 91 0 0 chr3 31099301 31099367 -196425211 + AT_rich Low_complexity Low_complexity 1 66 0 235 256 22 78 chr3 31100084 31100174 -196424404 - MIR SINE MIR -108 154 70 1990 221 58 2 chr3 31100176 31100587 -196423991 - LTR53 LTR ERVL -1 518 85 2017 155 9 15 chr3 31100598 31100934 -196423644 - MER1B DNA MER1_type -5 334 1 505 191 12 0 chr3 31100935 31101019 -196423559 - LTR53 LTR ERVL -434 85 1 458 207 0 0 chr3 31101337 31101424 -196423154 + AluJ/FRAM SINE Alu 214 300 -12 480 354 45 3 chr3 31101778 31102071 -196422507 + L2 LINE L2 2770 3082 -231 585 232 59 38 chr3 31102092 31102281 -196422297 + MIR SINE MIR 59 250 -12 196 281 141 25 chr3 31103035 31103156 -196421422 - L2 LINE L2 -460 2854 2720 31 0 0 0 chr3 31104711 31104742 -196419836 + AT_rich Low_complexity Low_complexity 1 31 0 2127 122 0 13 chr3 31104744 31105047 -196419531 + AluSg SINE Alu 1 299 -11 800 150 0 0 chr3 31105049 31105162 -196419416 - AluJo/FLAM SINE Alu -199 113 1 2318 53 0 60 chr3 31105993 31106312 -196418266 + AluY SINE Alu 1 300 -11 22 35 0 0 chr3 31106555 31106584 -196417994 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 31107042 31107066 -196417512 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr3 31107646 31107695 -196416883 + AT_rich Low_complexity Low_complexity 1 49 0 1436 339 82 57 chr3 31108730 31110358 -196414220 - HERVL LTR ERVL -310 5344 3676 231 189 0 19 chr3 31110734 31110787 -196413791 + FAM SINE Alu 124 175 0 309 282 106 69 chr3 31110821 31111066 -196413512 - HERVL LTR ERVL -2539 3115 2862 479 291 134 49 chr3 31111209 31111553 -196413025 - HERVL LTR ERVL -2804 2681 2309 628 269 30 8 chr3 31111560 31111744 -196412834 - HERVL LTR ERVL -2939 2057 1889 370 261 114 23 chr3 31111862 31112038 -196412540 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 31112102 31112157 -196412421 + HsTC2 DNA Tc2 3 57 -1841 1021 244 109 20 chr3 31112212 31112614 -196411964 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 31112631 31112711 -196411867 - MER91A DNA MER1_type 0 196 116 370 261 114 23 chr3 31114604 31114780 -196409798 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 31114844 31114899 -196409679 + HsTC2 DNA Tc2 3 57 -1841 1068 242 110 18 chr3 31114954 31115355 -196409223 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 31115372 31115452 -196409126 - MER91A DNA MER1_type 0 196 116 839 189 99 11 chr3 31117743 31117934 -196406644 + MER3 DNA MER1_type 1 208 -1 26 30 0 0 chr3 31118135 31118168 -196406410 + AT_rich Low_complexity Low_complexity 1 33 0 427 163 59 43 chr3 31118507 31118617 -196405961 + L1MC3 LINE L1 6212 6319 -1458 494 196 152 0 chr3 31118617 31118729 -196405849 + FLAM_A SINE Alu 2 130 -3 427 163 59 43 chr3 31118729 31118745 -196405833 + L1MC3 LINE L1 6319 7777 0 312 338 21 28 chr3 31118899 31119041 -196405537 - MIR SINE MIR -121 141 1 24 67 0 0 chr3 31121682 31121727 -196402851 + AT_rich Low_complexity Low_complexity 1 45 0 8586 127 16 11 chr3 31122737 31122933 -196401645 - Tigger1 DNA MER2_type -7 2411 2218 1409 163 101 11 chr3 31122933 31123209 -196401369 + AluJo SINE Alu 1 301 -11 8586 127 16 11 chr3 31123209 31124429 -196400149 - Tigger1 DNA MER2_type -200 2218 987 663 129 17 0 chr3 31124908 31125024 -196399554 - Tigger1 DNA MER2_type -1429 989 872 1312 167 42 0 chr3 31125024 31125240 -196399338 - AluJb SINE Alu -14 298 74 4251 171 32 33 chr3 31125240 31125889 -196398689 - Tigger1 DNA MER2_type -1537 881 233 333 0 0 0 chr3 31125889 31125926 -196398652 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2263 68 14 0 chr3 31125934 31126214 -196398364 - AluY SINE Alu -27 284 1 4251 171 32 33 chr3 31126214 31126437 -196398141 - Tigger1 DNA MER2_type -2192 226 1 243 159 159 16 chr3 31127902 31127965 -196396613 + MIR SINE MIR 111 182 -80 266 265 22 96 chr3 31128163 31128299 -196396279 - L2 LINE L2 -212 3060 2935 21 57 0 0 chr3 31128318 31128353 -196396225 + AT_rich Low_complexity Low_complexity 1 35 0 181 182 0 0 chr3 31128474 31128507 -196396071 - MIR SINE MIR -110 152 120 549 211 154 57 chr3 31130321 31130496 -196394082 + MIR SINE MIR 63 254 -8 380 266 7 56 chr3 31132208 31132351 -196392227 + MIR SINE MIR 77 212 -50 557 269 59 63 chr3 31132566 31132804 -196391774 - MIR SINE MIR -2 260 24 29 47 0 0 chr3 31133600 31133643 -196390935 + AT_rich Low_complexity Low_complexity 1 43 0 2298 110 0 3 chr3 31134052 31134362 -196390216 - AluSg SINE Alu 0 310 2 408 301 64 20 chr3 31134896 31135099 -196389479 + MIR SINE MIR 28 239 -23 2035 117 152 11 chr3 31135200 31135575 -196389003 - MSTA LTR MaLR 0 428 1 194 355 43 51 chr3 31135808 31135946 -196388632 + L2 LINE L2 3133 3269 -3 202 259 148 0 chr3 31136097 31136151 -196388427 + MIR SINE MIR 47 108 -154 350 279 153 33 chr3 31136206 31136421 -196388157 + MIR SINE MIR 19 259 -3 212 297 14 27 chr3 31136432 31136506 -196388072 + MIR3 SINE MIR 110 182 -26 745 227 25 17 chr3 31136506 31136789 -196387789 - MLT1A1 LTR MaLR -2 363 1 28 0 0 0 chr3 31138298 31138326 -196386252 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 31138697 31138719 -196385859 + AT_rich Low_complexity Low_complexity 1 22 0 263 290 193 21 chr3 31139874 31140019 -196384559 + MLT1J2 LTR MaLR 82 251 -199 * 706 164 182 36 chr3 31140018 31140148 -196384430 + Charlie4a DNA MER1_type 167 277 -1684 1894 130 20 27 chr3 31140148 31140447 -196384131 - AluJo SINE Alu -15 297 1 706 164 182 36 chr3 31140447 31140596 -196383982 + Charlie4a DNA MER1_type 277 487 -21 5775 82 14 9 chr3 31140933 31141845 -196382733 - L1PB1 LINE L1 -6 6145 5189 283 268 36 113 chr3 31141987 31142155 -196382423 - MIR3 SINE MIR -1 207 53 209 305 0 0 chr3 31142235 31142294 -196382284 + L2 LINE L2 1492 1550 -1764 572 304 144 45 chr3 31142322 31142884 -196381694 + L2 LINE L2 1731 2348 -966 186 286 230 16 chr3 31142908 31143034 -196381544 + L2 LINE L2 2549 2701 -613 1757 201 9 61 chr3 31143049 31143511 -196381067 - LTR47B LTR ERVL 0 443 6 1803 169 23 13 chr3 31143904 31144205 -196380373 + AluJo SINE Alu 1 304 -8 625 267 38 33 chr3 31144894 31145104 -196379474 + L2 LINE L2 3103 3313 0 2132 153 30 6 chr3 31145225 31145591 -196378987 + THE1C LTR MaLR 1 375 0 262 346 60 30 chr3 31145645 31145778 -196378800 - L2 LINE L2 0 3272 3136 1251 183 0 68 chr3 31146260 31146511 -196378067 + AluJb SINE Alu 11 244 -68 6672 180 154 37 chr3 31146528 31148097 -196376481 - MER52A LTR ERV1 0 1755 3 21 0 0 0 chr3 31150149 31150170 -196374408 + AT_rich Low_complexity Low_complexity 1 21 0 232 386 59 0 chr3 31150672 31150773 -196373805 + MIR SINE MIR 20 126 -136 291 278 39 102 chr3 31150827 31151032 -196373546 - MIR SINE MIR -1 261 70 209 333 0 0 chr3 31150980 31151043 -196373535 + MIR SINE MIR 200 262 0 * 199 353 38 49 chr3 31151592 31151776 -196372802 + L2 LINE L2 2871 3052 -220 2490 124 6 0 chr3 31152104 31152466 -196372112 - THE1B LTR MaLR 0 364 1 2087 125 13 20 chr3 31152585 31152890 -196371688 - AluSx SINE Alu -9 303 1 193 0 94 0 chr3 31153019 31153051 -196371527 + A-rich Low_complexity Low_complexity 3 37 0 4685 189 194 82 chr3 31153455 31155034 -196369544 - MER52A LTR ERV1 0 1755 1 751 239 92 14 chr3 31155051 31155269 -196369309 - MIR SINE MIR -21 241 7 209 213 43 0 chr3 31155307 31155354 -196369224 - L2 LINE L2 -2 3270 3222 21 0 0 0 chr3 31155476 31155497 -196369081 + AT_rich Low_complexity Low_complexity 1 21 0 1750 57 8 28 chr3 31155700 31155948 -196368630 - L1PA7 LINE L1 0 6154 5912 2393 134 8 5 chr3 31156596 31156969 -196367609 - MER1A DNA MER1_type 0 529 156 555 139 226 0 chr3 31157141 31157256 -196367322 - MER1A DNA MER1_type -386 141 1 316 266 0 0 chr3 31157285 31157349 -196367229 + MIR SINE MIR 84 147 -61 415 151 32 54 chr3 31157724 31157817 -196366761 + Tigger4(Zombi) DNA MER2_type 2641 2731 0 617 305 124 52 chr3 31158955 31159489 -196365089 - L2 LINE L2 -266 3006 2438 247 307 11 0 chr3 31160197 31160285 -196364293 - MIR SINE MIR -4 258 170 512 148 31 87 chr3 31160309 31160505 -196364073 - Charlie5 DNA MER1_type -40 2572 2388 262 193 70 0 chr3 31160506 31160563 -196364015 - MIR SINE MIR -102 160 100 458 333 18 24 chr3 31161452 31161620 -196362958 - MIR SINE MIR -94 168 2 873 154 82 119 chr3 31161719 31162037 -196362541 - MER33 DNA MER1_type -14 310 5 854 88 35 0 chr3 31162223 31162337 -196362241 - AluSg/x SINE Alu -13 297 180 1258 85 0 18 chr3 31162384 31162548 -196362030 - AluSq SINE Alu -132 181 21 678 275 113 10 chr3 31163996 31164305 -196360273 - L1ME3A LINE L1 -224 5929 5589 1411 147 16 16 chr3 31164305 31164563 -196360015 - Tigger2 DNA MER2_type 0 2718 2461 3722 144 53 21 chr3 31164616 31165337 -196359241 - Tigger2 DNA MER2_type -1974 744 1 579 223 70 42 chr3 31165387 31165658 -196358920 - L1ME3A LINE L1 -613 5532 5237 430 259 74 29 chr3 31165902 31166145 -196358433 - L1ME3A LINE L1 -1478 4651 4398 347 171 0 66 chr3 31166195 31166271 -196358307 + AluSp SINE Alu 137 207 -96 188 293 35 35 chr3 31166719 31166777 -196357801 + L3b LINE CR1 1517 1574 -9 468 325 58 13 chr3 31168265 31168419 -196356159 - MIR SINE MIR -98 164 4 259 239 233 31 chr3 31168885 31169044 -196355534 - MIR SINE MIR -68 194 4 610 349 32 32 chr3 31169054 31169401 -196355177 + L3 LINE CR1 1198 1544 -33 1073 173 14 9 chr3 31170670 31170890 -196353688 - AluSq SINE Alu 0 313 93 32 26 0 0 chr3 31171014 31171053 -196353525 + GC_rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr3 31171216 31171254 -196353324 + GC_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr3 31171421 31171449 -196353129 + GC_rich Low_complexity Low_complexity 1 28 0 1267 136 31 21 chr3 31171621 31172127 -196352451 - LTR60 LTR ERV1 -3 583 1 2282 203 70 2 chr3 31172127 31172655 -196351923 + L1MD2 LINE L1 5784 6347 -12 565 274 26 13 chr3 31172680 31172881 -196351697 + MIR SINE MIR 12 213 -49 631 259 137 39 chr3 31172984 31173397 -196351181 - L1ME3A LINE L1 -2985 3144 2687 478 288 71 16 chr3 31173465 31173776 -196350802 - L1ME3A LINE L1 -3528 2601 2274 596 300 51 86 chr3 31173789 31174276 -196350302 - L1ME3A LINE L1 -5648 471 2 2348 92 7 0 chr3 31174972 31175277 -196349301 + AluSq SINE Alu 1 307 -6 237 159 0 0 chr3 31175961 31176005 -196348573 + (CTA)n Simple_repeat Simple_repeat 1 44 0 2176 116 3 0 chr3 31176808 31177109 -196347469 - AluSg SINE Alu -8 302 1 189 0 0 0 chr3 31177317 31177338 -196347240 + (T)n Simple_repeat Simple_repeat 1 21 0 327 367 16 27 chr3 31178258 31178446 -196346132 + MIR SINE MIR 23 208 -54 2327 68 7 0 chr3 31178805 31179100 -196345478 - AluY SINE Alu -4 307 11 732 220 108 51 chr3 31179742 31180037 -196344541 + L1MC5 LINE L1 7603 7914 -47 775 159 29 41 chr3 31180083 31180279 -196344299 - MER6 DNA MER2_type -3 862 -62 845 159 0 0 chr3 31183103 31183248 -196341330 - FRAM SINE Alu 0 40 1 2119 108 7 0 chr3 31183440 31183753 -196340825 - AluSg SINE Alu 0 316 2 762 174 6 96 chr3 31183784 31183951 -196340627 - FRAM SINE Alu -30 146 1 819 125 0 16 chr3 31186087 31186215 -196338363 + AluJo SINE Alu 6 131 -181 5905 161 24 10 chr3 31186215 31187715 -196336863 + L1PB3 LINE L1 4094 5625 -529 8291 49 6 0 chr3 31187715 31188678 -196335900 - LTR5 LTR ERVK 0 969 1 5905 161 24 10 chr3 31188678 31189213 -196335365 + L1PB3 LINE L1 5625 6151 -3 2441 90 3 0 chr3 31189513 31189824 -196334754 - AluSp SINE Alu 0 313 2 26 30 0 0 chr3 31189836 31189869 -196334709 + AT_rich Low_complexity Low_complexity 1 33 0 307 247 225 15 chr3 31192537 31192671 -196331907 + MIR SINE MIR 37 190 -72 2136 125 0 0 chr3 31192805 31193100 -196331478 + AluSx SINE Alu 3 297 -15 1081 246 147 14 chr3 31193645 31193991 -196330587 + L1MEc LINE L1 37 428 -5968 536 245 43 93 chr3 31194007 31194309 -196330269 + L1MEc LINE L1 599 885 -5511 1456 204 38 35 chr3 31194866 31195239 -196329339 + MLT1A2 LTR MaLR 1 374 0 832 191 6 0 chr3 31195262 31195419 -196329159 + AluJo SINE Alu 136 293 -19 3521 192 46 97 chr3 31196729 31197417 -196327161 + L1MA9 LINE L1 4270 4991 -1321 948 158 18 23 chr3 31197417 31197588 -196326990 + FRAM SINE Alu 1 164 -12 3521 192 46 97 chr3 31197588 31197972 -196326606 + L1MA9 LINE L1 4991 5393 -919 2007 121 13 3 chr3 31197972 31198270 -196326308 - AluSq SINE Alu -12 301 1 3521 192 46 97 chr3 31198270 31199193 -196325385 + L1MA9 LINE L1 5393 6270 -42 2365 90 7 0 chr3 31199196 31199496 -196325082 - AluSc SINE Alu -7 302 1 32 0 0 0 chr3 31199496 31199528 -196325050 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr3 31199816 31199863 -196324715 + AT_rich Low_complexity Low_complexity 1 47 0 4137 176 82 5 chr3 31199954 31200757 -196323821 - MER6 DNA MER2_type 0 865 1 699 164 9 9 chr3 31201835 31201951 -196322627 + FLAM_A SINE Alu 1 116 -17 1227 160 5 0 chr3 31202411 31202599 -196321979 + AluSg/x SINE Alu 98 286 -26 267 274 0 0 chr3 31202839 31202901 -196321677 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 716 299 58 31 chr3 31203029 31203477 -196321101 - L1ME LINE L1 -310 5811 5352 1650 159 10 45 chr3 31203648 31203962 -196320616 - AluJb SINE Alu -9 303 1 1225 254 100 65 chr3 31204991 31205419 -196319159 + L2 LINE L2 2278 2690 -623 1617 164 4 4 chr3 31205419 31205675 -196318903 - AluJb SINE Alu -56 256 1 1225 254 100 65 chr3 31205675 31206245 -196318333 + L2 LINE L2 2690 3312 -1 385 255 39 10 chr3 31206275 31206377 -196318201 - MIR SINE MIR -110 152 48 3772 46 0 0 chr3 31208325 31208782 -196315796 - L1PA5 LINE L1 -6 6148 5692 2030 148 7 0 chr3 31209068 31209372 -196315206 + AluSx SINE Alu 3 308 -4 199 245 0 0 chr3 31209535 31209584 -196314994 - L2 LINE L2 -2 3311 3263 246 343 40 10 chr3 31209738 31209837 -196314741 - L2 LINE L2 -21 3292 3191 1003 220 19 19 chr3 31209854 31210068 -196314510 - MER20 DNA MER1_type -5 214 1 373 273 33 82 chr3 31210154 31210337 -196314241 - L2 LINE L2 -966 2348 2175 25 0 0 0 chr3 31210581 31210606 -196313972 + AT_rich Low_complexity Low_complexity 1 25 0 327 311 66 9 chr3 31210737 31210843 -196313735 - MIR3 SINE MIR -82 126 15 1529 172 0 68 chr3 31210975 31211283 -196313295 - AluJb SINE Alu -25 287 1 770 130 9 0 chr3 31211409 31211524 -196313054 + AluSq/x SINE Alu 3 118 -195 21 0 0 0 chr3 31211654 31211675 -196312903 + AT_rich Low_complexity Low_complexity 1 21 0 1101 151 17 0 chr3 31211734 31211913 -196312665 + AluSx SINE Alu 62 243 -69 303 28 0 0 chr3 31211928 31211964 -196312614 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1039 285 112 16 chr3 31212346 31212847 -196311731 - L1MC4a LINE L1 -1911 5897 5349 527 260 42 34 chr3 31212987 31213258 -196311320 + L2 LINE L2 2720 3068 -245 180 0 0 0 chr3 31213595 31213615 -196310963 + (TTA)n Simple_repeat Simple_repeat 2 21 0 306 0 0 0 chr3 31214128 31214162 -196310416 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 267 0 0 chr3 31214174 31214249 -196310329 + L1MC4 LINE L1 7892 7966 -76 235 282 64 0 chr3 31214389 31214467 -196310111 - L2 LINE L2 -220 3052 2970 1599 160 19 58 chr3 31214682 31214994 -196309584 + AluJo SINE Alu 1 300 -12 1336 169 0 33 chr3 31218683 31218925 -196305653 - AluJb SINE Alu -11 301 68 380 198 62 0 chr3 31219272 31219353 -196305225 + MIR SINE MIR 147 232 -30 1504 206 18 0 chr3 31219673 31219950 -196304628 - AluJo SINE Alu -30 282 1 911 123 190 0 chr3 31220650 31220714 -196303864 - MER30 DNA MER1_type -36 194 143 207 0 0 0 chr3 31220714 31220737 -196303841 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 911 123 190 0 chr3 31220737 31220835 -196303743 - MER30 DNA MER1_type -87 143 1 2494 53 0 7 chr3 31221136 31221439 -196303139 - AluY SINE Alu -10 301 1 24 0 0 0 chr3 31223226 31223250 -196301328 + AT_rich Low_complexity Low_complexity 1 24 0 488 256 94 19 chr3 31223376 31223536 -196301042 - MIR SINE MIR 0 262 91 258 269 115 29 chr3 31223592 31223696 -196300882 - MIR3 SINE MIR -5 203 91 330 45 0 0 chr3 31223857 31223901 -196300677 + (CA)n Simple_repeat Simple_repeat 2 45 0 1941 178 153 18 chr3 31223909 31224354 -196300224 - MLT1D LTR MaLR 0 505 1 183 191 235 0 chr3 31225470 31225538 -196299040 - L2 LINE L2 -3 3269 3186 21 0 0 0 chr3 31225986 31226007 -196298571 + AT_rich Low_complexity Low_complexity 1 21 0 2268 161 39 0 chr3 31226007 31226418 -196298160 + L1MC/D LINE L1 5316 5742 -617 1334 219 21 21 chr3 31226441 31226728 -196297850 + MER21B LTR ERV1 12 298 -565 2402 19 0 4 chr3 31326800 31327066 -196197512 + AluY SINE Alu 37 301 -10 248 261 165 0 chr3 31327129 31327244 -196197334 + L2 LINE L2 2625 2758 -556 1978 153 0 22 chr3 31327247 31327561 -196197017 - AluSx SINE Alu -5 307 1 1799 176 14 0 chr3 31328234 31328512 -196196066 + AluJo SINE Alu 1 282 -30 2215 122 0 25 chr3 31329166 31329510 -196195068 + AluSx SINE Alu 1 336 0 1868 157 16 0 chr3 31329511 31329817 -196194761 + AluJo SINE Alu 1 311 -1 2587 68 3 0 chr3 31329951 31330260 -196194318 - AluSq SINE Alu -3 310 1 215 163 82 20 chr3 31330476 31330525 -196194053 + L2 LINE L2 3217 3268 -4 377 131 0 0 chr3 31331342 31331403 -196193175 + MER5A DNA MER1_type 2 62 -127 1942 146 43 65 chr3 31331511 31331845 -196192733 + MLT1B LTR MaLR 3 329 -61 2254 85 11 0 chr3 31331845 31332162 -196192416 + AluSp SINE Alu 1 320 0 1942 146 43 65 chr3 31332162 31332223 -196192355 + MLT1B LTR MaLR 329 390 0 443 267 92 24 chr3 31332318 31332524 -196192054 - MIR SINE MIR -41 221 2 261 285 99 10 chr3 31332598 31332715 -196191863 - MIR SINE MIR -67 141 34 22 0 0 0 chr3 31332843 31332865 -196191713 + AT_rich Low_complexity Low_complexity 1 22 0 654 235 31 46 chr3 31333009 31333205 -196191373 + MIR SINE MIR 35 227 -35 180 111 0 0 chr3 31333577 31333604 -196190974 + (TAA)n Simple_repeat Simple_repeat 1 27 0 430 237 70 95 chr3 31333758 31333974 -196190604 + L1MC4a LINE L1 5656 5775 -346 447 54 0 0 chr3 31333974 31334030 -196190548 + L1MB8 LINE L1 6118 6173 -5 430 237 70 95 chr3 31334030 31334079 -196190499 + L1MC4a LINE L1 5775 5824 -297 216 256 137 0 chr3 31334303 31334420 -196190158 - MIR SINE MIR -6 256 124 2156 137 0 7 chr3 31334608 31334914 -196189664 - AluSx SINE Alu -8 304 1 1230 66 48 0 chr3 31334927 31335094 -196189484 - L1MA1 LINE L1 0 6302 6128 200 250 238 0 chr3 31335670 31335754 -196188824 - MIR SINE MIR -6 256 153 550 263 76 15 chr3 31336132 31336330 -196188248 - L2 LINE L2 0 3313 3104 230 204 0 0 chr3 31336409 31336453 -196188125 - L1MC4 LINE L1 -1347 6695 6652 814 236 27 16 chr3 31336469 31336656 -196187922 + MER8 DNA MER2_type 2 239 0 250 293 0 0 chr3 31336656 31336714 -196187864 + (TA)n Simple_repeat Simple_repeat 1 58 0 309 194 145 0 chr3 31336714 31336791 -196187787 - MIR SINE MIR -66 142 64 246 209 0 0 chr3 31337413 31337456 -196187122 + LTR67 LTR ERVL 500 542 -15 244 175 0 0 chr3 31337433 31337473 -196187105 + MLT1K LTR MaLR 549 588 0 * 276 343 64 10 chr3 31337585 31337789 -196186789 - L2 LINE L2 -188 3084 2870 2142 106 7 0 chr3 31337968 31338274 -196186304 - AluSp SINE Alu 0 308 1 1842 129 36 39 chr3 31338274 31338583 -196185995 - AluJo SINE Alu -4 308 1 1456 236 129 14 chr3 31338856 31339331 -196185247 - MLT1E1 LTR MaLR 0 654 62 1841 181 10 0 chr3 31339331 31339624 -196184954 + AluJo SINE Alu 1 296 -16 1456 236 129 14 chr3 31339624 31339694 -196184884 - MLT1E1 LTR MaLR -592 62 1 1075 217 120 124 chr3 31339829 31339922 -196184656 - MLT1D LTR MaLR 0 505 413 1027 172 151 79 chr3 31339922 31340052 -196184526 + AluJo SINE Alu 3 122 -180 2312 95 3 0 chr3 31340052 31340348 -196184230 + AluSp SINE Alu 6 302 -11 1027 172 151 79 chr3 31340348 31340496 -196184082 + AluJo SINE Alu 122 301 -1 1075 217 120 124 chr3 31340496 31340909 -196183669 - MLT1D LTR MaLR -92 413 1 234 0 0 0 chr3 31341310 31341336 -196183242 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2179 111 0 29 chr3 31341423 31341730 -196182848 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 31341730 31341758 -196182820 + AT_rich Low_complexity Low_complexity 1 28 0 2443 92 0 0 chr3 31342680 31342986 -196181592 + AluSg1 SINE Alu 1 306 -3 579 217 90 38 chr3 31343163 31343375 -196181203 + MIR SINE MIR 17 239 -23 446 274 196 38 chr3 31343456 31343740 -196180838 + L2 LINE L2 2851 3217 -96 506 209 76 19 chr3 31343740 31343845 -196180733 - MER81 DNA DNA -3 111 1 446 274 196 38 chr3 31343845 31343958 -196180620 + L2 LINE L2 3217 3311 -2 692 201 63 0 chr3 31346933 31347107 -196177471 - MER53 DNA DNA -1 188 4 355 199 46 99 chr3 31347221 31347352 -196177226 - MLT1H LTR MaLR -16 533 416 364 288 24 16 chr3 31347559 31347684 -196176894 + MIR SINE MIR 21 146 -62 873 221 55 106 chr3 31347934 31348350 -196176228 + HAL1 LINE L1 1 395 -2112 * 4177 183 21 11 chr3 31348344 31348644 -196175934 - L1MC/D LINE L1 -608 5736 5440 1924 162 30 0 chr3 31348644 31348947 -196175631 - AluJb SINE Alu 0 312 1 4177 183 21 11 chr3 31348947 31349913 -196174665 - L1MC/D LINE L1 -904 5440 4460 1563 117 160 44 chr3 31349913 31349952 -196174626 - THE1C LTR MaLR 0 375 342 1683 134 8 4 chr3 31349952 31350205 -196174373 + AluSx SINE Alu 55 308 -4 1563 117 160 44 chr3 31350205 31350483 -196174095 - THE1C LTR MaLR -33 342 31 2393 95 0 0 chr3 31350483 31350789 -196173789 + AluY SINE Alu 1 306 -5 1563 117 160 44 chr3 31350789 31350825 -196173753 - THE1C LTR MaLR -344 31 1 4458 204 24 131 chr3 31350825 31351556 -196173022 - L1MC/D LINE L1 -1682 4464 3657 840 165 31 0 chr3 31351556 31351683 -196172895 + FLAM_C SINE Alu 1 131 -12 4458 204 24 131 chr3 31351683 31351919 -196172659 - L1MC/D LINE L1 -2489 3657 3397 2368 99 3 7 chr3 31351919 31352222 -196172356 + AluSp SINE Alu 1 302 -11 4458 204 24 131 chr3 31352222 31352324 -196172254 - L1MC/D LINE L1 -2749 3397 3286 1791 175 0 20 chr3 31352324 31352627 -196171951 - AluJo SINE Alu -13 299 3 4458 204 24 131 chr3 31352627 31352883 -196171695 - L1MC/D LINE L1 -2860 3286 3252 2352 117 0 0 chr3 31352883 31353191 -196171387 - AluSg SINE Alu -2 308 1 4458 204 24 131 chr3 31353191 31353606 -196170972 - L1MC/D LINE L1 -2894 3252 2794 897 165 10 0 chr3 31353626 31353837 -196170741 + CT-rich Low_complexity Low_complexity 1 213 0 960 65 0 40 chr3 31353855 31353979 -196170599 - AluSq/x SINE Alu -193 119 1 596 243 29 0 chr3 31353990 31354130 -196170448 - L1MC/D LINE L1 -3380 2766 2623 22 35 0 0 chr3 31354961 31354990 -196169588 + AT_rich Low_complexity Low_complexity 1 29 0 2161 108 0 0 chr3 31354999 31355278 -196169300 - AluSx SINE Alu -33 279 1 1775 138 54 40 chr3 31355373 31355670 -196168908 + AluSx SINE Alu 1 301 -11 685 225 133 92 chr3 31356540 31356628 -196167950 - MLT1J LTR MaLR -22 489 406 2436 90 0 0 chr3 31356628 31356928 -196167650 + AluSp SINE Alu 2 301 -12 685 225 133 92 chr3 31356928 31357305 -196167273 - MLT1J LTR MaLR -105 406 5 215 31 31 0 chr3 31357793 31357825 -196166753 + (TA)n Simple_repeat Simple_repeat 1 33 0 1506 161 136 13 chr3 31357872 31358189 -196166389 - MLT1A1 LTR MaLR -8 357 2 437 244 41 1 chr3 31358367 31358486 -196166092 - L1ME2 LINE L1 -1 6183 6050 1525 203 17 3 chr3 31358496 31358792 -196165786 + AluJo SINE Alu 1 300 -12 2158 128 0 16 chr3 31358792 31359098 -196165480 + AluSg SINE Alu 1 301 -9 332 207 0 23 chr3 31359128 31359215 -196165363 + GA-rich Low_complexity Low_complexity 2 86 0 2207 121 7 0 chr3 31359219 31359697 -196164881 + AluSg SINE Alu 1 480 0 713 168 20 204 chr3 31359779 31359987 -196164591 - L1ME2 LINE L1 -110 6054 5938 591 202 81 8 chr3 31359987 31360111 -196164467 - FLAM_A SINE Alu 0 133 1 713 168 20 204 chr3 31360111 31360259 -196164319 - L1ME2 LINE L1 -226 5938 5764 196 281 18 0 chr3 31360261 31360318 -196164260 - MIR SINE MIR 0 262 205 2369 111 0 0 chr3 31360696 31361002 -196163576 - AluSg SINE Alu -4 306 1 293 205 8 94 chr3 31361065 31361182 -196163396 - MIR SINE MIR -105 157 51 1947 170 0 0 chr3 31361183 31361495 -196163083 + AluSx SINE Alu 1 312 0 2235 118 0 3 chr3 31362342 31362646 -196161932 - AluSx SINE Alu -9 303 1 579 252 74 26 chr3 31362732 31363075 -196161503 + LTR16A LTR ERVL 21 413 -37 429 238 34 62 chr3 31363240 31363264 -196161314 - MIR SINE MIR -62 146 123 1795 156 3 23 chr3 31363264 31363566 -196161012 - AluJo SINE Alu -16 296 1 429 238 34 62 chr3 31363566 31363719 -196160859 - MIR SINE MIR -85 123 2 2224 110 0 0 chr3 31363893 31364184 -196160394 - AluSx SINE Alu -21 291 1 814 228 46 14 chr3 31364255 31364644 -196159934 - MLT1C LTR MaLR -5 462 1 * 874 183 77 73 chr3 31364644 31364917 -196159661 - LTR37B LTR ERV1 -82 386 113 942 132 5 136 chr3 31364927 31365103 -196159475 + MER3 DNA MER1_type 11 154 -55 1649 186 16 16 chr3 31365103 31365410 -196159168 + AluJb SINE Alu 3 309 -3 942 132 5 136 chr3 31365410 31365453 -196159125 + MER3 DNA MER1_type 154 201 -8 365 224 121 0 chr3 31365453 31365569 -196159009 - LTR37B LTR ERV1 -338 130 1 357 314 70 77 chr3 31365919 31366331 -196158247 - L2 LINE L2 0 3272 2862 2408 89 3 0 chr3 31366331 31366633 -196157945 + AluSq SINE Alu 1 303 -10 357 314 70 77 chr3 31366633 31366688 -196157890 - L2 LINE L2 -410 2862 2808 235 341 66 46 chr3 31366765 31366927 -196157651 - L2 LINE L2 0 3313 3156 912 190 0 18 chr3 31366927 31367090 -196157488 + FRAM SINE Alu 2 161 -5 1605 170 58 11 chr3 31367091 31367367 -196157211 + AluJb SINE Alu 1 289 -23 2291 90 10 3 chr3 31367370 31367669 -196156909 + AluSg SINE Alu 1 301 -9 235 341 66 46 chr3 31367669 31367849 -196156729 - L2 LINE L2 -158 3155 2958 513 242 137 68 chr3 31367923 31368382 -196156196 - L1ME4a LINE L1 -68 6053 5563 259 214 135 79 chr3 31368475 31368564 -196156014 + L2 LINE L2 3199 3292 -21 319 236 143 33 chr3 31369655 31369837 -196154741 + L1MEd LINE L1 965 1166 -4953 2266 110 3 0 chr3 31369851 31370152 -196154426 + AluSx SINE Alu 1 302 -10 650 305 83 52 chr3 31370153 31370176 -196154402 + HAL1 LINE L1 1243 1264 -1243 2083 129 0 7 chr3 31370176 31370478 -196154100 - AluSx SINE Alu -10 302 3 650 305 83 52 chr3 31370478 31370949 -196153629 + HAL1 LINE L1 1264 1752 -755 1784 164 0 30 chr3 31371009 31371313 -196153265 + AluJo SINE Alu 1 295 -17 1878 72 122 11 chr3 31371316 31371579 -196152999 + AluSg1 SINE Alu 1 292 -17 2027 94 44 7 chr3 31371628 31371932 -196152646 + AluSc SINE Alu 1 314 0 1618 129 70 39 chr3 31373893 31374205 -196150373 - AluJb SINE Alu 0 312 1 414 317 35 14 chr3 31374435 31374577 -196150001 - MER96 DNA MER1_type? -28 147 3 1934 158 3 0 chr3 31374939 31375231 -196149347 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr3 31376317 31376340 -196148238 + AT_rich Low_complexity Low_complexity 1 23 0 2110 118 0 22 chr3 31378361 31378675 -196145903 + AluSx SINE Alu 1 307 -5 1792 138 26 35 chr3 31379040 31379351 -196145227 - AluJb SINE Alu -3 309 2 195 42 0 0 chr3 31379451 31379475 -196145103 + (TAA)n Simple_repeat Simple_repeat 1 24 0 248 161 36 0 chr3 31379848 31379904 -196144674 + CT-rich Low_complexity Low_complexity 1 58 0 211 177 32 0 chr3 31380101 31380163 -196144415 + (TA)n Simple_repeat Simple_repeat 1 64 0 2216 96 0 13 chr3 31380164 31380467 -196144111 - AluSx SINE Alu -13 299 1 1040 160 0 0 chr3 31380537 31380687 -196143891 - FRAM SINE Alu -26 150 1 208 293 0 0 chr3 31381548 31381606 -196142972 + GA-rich Low_complexity Low_complexity 1 58 0 452 245 43 8 chr3 31381611 31381769 -196142809 + MIR SINE MIR 8 173 -67 534 256 0 16 chr3 31382245 31382370 -196142208 - MER94 DNA DNA 0 134 12 332 114 0 0 chr3 31382642 31382686 -196141892 - MLT1B LTR MaLR -1 389 346 1262 107 0 0 chr3 31382697 31382865 -196141713 + AluSg/x SINE Alu 129 296 -14 1718 160 17 0 chr3 31382865 31383159 -196141419 - MLT1B LTR MaLR -65 325 27 1371 167 70 22 chr3 31383162 31383432 -196141146 + AluJo SINE Alu 1 283 -29 213 94 0 0 chr3 31383438 31383470 -196141108 + (TA)n Simple_repeat Simple_repeat 2 33 0 296 201 4 65 chr3 31383496 31383564 -196141014 - MER104 DNA Tc2 -1806 92 37 1522 178 0 38 chr3 31383564 31383878 -196140700 + AluJo SINE Alu 1 302 -10 296 201 4 65 chr3 31383878 31383912 -196140666 - MER104 DNA Tc2 -1861 37 2 339 44 0 0 chr3 31384789 31384834 -196139744 + (TG)n Simple_repeat Simple_repeat 2 46 0 863 256 16 64 chr3 31384915 31385227 -196139351 + MER102a DNA MER1_type 34 330 0 2214 123 0 0 chr3 31385612 31385913 -196138665 - AluSq SINE Alu -4 309 9 273 290 56 28 chr3 31385957 31386064 -196138514 + MER91C DNA MER1_type 31 140 0 282 29 0 0 chr3 31386075 31386110 -196138468 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr3 31386173 31386201 -196138377 + AT_rich Low_complexity Low_complexity 1 28 0 2317 77 0 3 chr3 31386451 31386774 -196137804 - AluY SINE Alu 0 322 1 22 0 0 0 chr3 31386774 31386796 -196137782 + AT_rich Low_complexity Low_complexity 1 22 0 384 231 0 65 chr3 31386800 31386908 -196137670 - MER5A DNA MER1_type -80 109 9 22 0 0 0 chr3 31387004 31387026 -196137552 + AT_rich Low_complexity Low_complexity 1 22 0 1963 114 35 44 chr3 31387026 31387151 -196137427 - L1MB3 LINE L1 -7 6176 6051 2111 135 3 3 chr3 31387151 31387448 -196137130 + AluSx SINE Alu 1 297 -15 1963 114 35 44 chr3 31387448 31387664 -196136914 - L1MB3 LINE L1 -132 6051 5838 1533 174 12 70 chr3 31387672 31387999 -196136579 - AluJb SINE Alu -4 308 1 716 219 31 26 chr3 31388411 31388603 -196135975 - MIR SINE MIR -23 239 47 1196 235 78 16 chr3 31389695 31390014 -196134564 - L1MC4 LINE L1 -138 7904 7566 1252 114 0 11 chr3 31390014 31390189 -196134389 - AluSg/x SINE Alu -14 298 126 2002 106 0 18 chr3 31390190 31390465 -196134113 - AluSg SINE Alu -18 292 23 2131 107 3 7 chr3 31390468 31390759 -196133819 - AluSx SINE Alu -21 291 2 880 238 181 0 chr3 31390767 31391048 -196133530 - L1MC4 LINE L1 -473 7569 7238 2413 93 3 0 chr3 31391092 31391403 -196133175 - AluSx SINE Alu 0 312 1 2285 93 0 7 chr3 31392195 31392495 -196132083 - AluSx SINE Alu -14 298 1 2428 101 0 0 chr3 31392896 31393203 -196131375 + AluSq SINE Alu 1 307 -6 383 349 32 24 chr3 31393204 31393453 -196131125 - MIR SINE MIR -2 260 10 203 274 104 96 chr3 31394591 31394726 -196129852 - MIR3 SINE MIR -60 148 13 351 310 21 35 chr3 31394915 31395060 -196129518 + MER91A DNA MER1_type 1 143 -53 278 250 90 20 chr3 31395070 31395170 -196129408 + MER91A DNA MER1_type 86 192 -4 413 267 78 30 chr3 31395175 31395419 -196129159 + MLT1K LTR MaLR 30 320 -268 300 235 106 12 chr3 31395500 31395585 -196128993 + MLT1K LTR MaLR 496 588 0 228 135 0 0 chr3 31396024 31396061 -196128517 + (A)n Simple_repeat Simple_repeat 1 37 0 213 39 0 0 chr3 31396104 31396130 -196128448 + (TC)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 31396647 31396669 -196127909 + AT_rich Low_complexity Low_complexity 1 22 0 23 65 0 16 chr3 31396762 31396802 -196127776 + AT_rich Low_complexity Low_complexity 1 41 -20 2419 32 4 0 chr3 31396802 31397080 -196127498 + AluY SINE Alu 1 279 -32 23 65 0 16 chr3 31397080 31397101 -196127477 + AT_rich Low_complexity Low_complexity 41 61 0 351 0 0 0 chr3 31397101 31397140 -196127438 + (TTA)n Simple_repeat Simple_repeat 2 40 0 318 302 151 0 chr3 31397844 31397970 -196126608 + MIR SINE MIR 48 192 -70 1866 132 3 33 chr3 31397972 31398275 -196126303 + AluSx SINE Alu 1 294 -18 843 211 53 35 chr3 31398940 31399173 -196125405 + MLT1D LTR MaLR 5 228 -239 2433 90 0 3 chr3 31399216 31399528 -196125050 - AluY SINE Alu 0 311 1 1711 149 10 35 chr3 31399529 31399817 -196124761 - AluJb SINE Alu -13 299 19 2298 101 0 25 chr3 31399991 31400308 -196124270 - AluSx SINE Alu -3 309 1 1000 183 0 0 chr3 31400314 31400489 -196124089 - FRAM SINE Alu 0 176 2 417 264 182 0 chr3 31400708 31400856 -196123722 - MER5A DNA MER1_type -8 181 7 313 148 0 0 chr3 31401393 31401447 -196123131 - L1MC4 LINE L1 0 8042 7989 3298 162 43 14 chr3 31401450 31401975 -196122603 + L1MB5 LINE L1 5550 6095 -79 2108 111 24 0 chr3 31401975 31402273 -196122305 - AluY SINE Alu -6 305 1 3298 162 43 14 chr3 31402273 31402322 -196122256 + L1MB5 LINE L1 6095 6141 -33 1327 181 4 26 chr3 31402322 31402548 -196122030 + AluJo SINE Alu 1 221 -91 458 195 0 0 chr3 31402624 31402701 -196121877 + AluJo SINE Alu 223 299 -13 236 81 0 0 chr3 31402701 31402738 -196121840 + L1MB5 LINE L1 6132 6168 -6 2132 105 21 0 chr3 31402755 31403040 -196121538 + AluSg SINE Alu 1 291 -19 1955 213 65 44 chr3 31403089 31403629 -196120949 - L1MC4 LINE L1 -194 7848 7298 1719 65 0 30 chr3 31403638 31403869 -196120709 + AluY SINE Alu 88 311 0 2066 138 0 0 chr3 31404122 31404419 -196120159 + AluSx SINE Alu 1 297 -15 2264 99 0 3 chr3 31405200 31405494 -196119084 - AluSx SINE Alu -19 293 1 2211 113 7 0 chr3 31405504 31405796 -196118782 - AluSq SINE Alu -19 294 1 37 52 0 0 chr3 31405873 31405931 -196118647 + AT_rich Low_complexity Low_complexity 1 58 0 768 184 0 75 chr3 31405994 31406168 -196118410 + AluJo SINE Alu 121 281 -31 1943 116 14 130 chr3 31406363 31406393 -196118185 + MER47A DNA MER2_type 1 33 -2290 1814 186 10 0 chr3 31406393 31406688 -196117890 - AluJb SINE Alu -14 298 1 1943 116 14 130 chr3 31406688 31406811 -196117767 + MER47A DNA MER2_type 33 169 -2154 2292 102 0 20 chr3 31406811 31407115 -196117463 + AluSx SINE Alu 1 298 -14 1943 116 14 130 chr3 31407115 31407153 -196117425 + MER47A DNA MER2_type 169 210 -2113 1757 170 31 7 chr3 31407153 31407442 -196117136 + AluJo SINE Alu 1 296 -16 1943 116 14 130 chr3 31407442 31407662 -196116916 + MER47A DNA MER2_type 210 366 0 189 0 0 0 chr3 31408271 31408292 -196116286 + (TA)n Simple_repeat Simple_repeat 1 21 0 1182 247 128 10 chr3 31408359 31408772 -196115806 + LTR16C LTR ERVL 1 462 -29 252 280 40 40 chr3 31408798 31408898 -196115680 - MIR SINE MIR -148 114 15 2484 66 3 0 chr3 31408898 31409199 -196115379 - AluY SINE Alu -9 302 1 2122 140 0 10 chr3 31410914 31411221 -196113357 + AluJb SINE Alu 1 304 -8 810 137 86 6 chr3 31411322 31411497 -196113081 - MER33 DNA MER1_type 0 363 175 1694 207 55 34 chr3 31411497 31411879 -196112699 + MSTD LTR MaLR 1 390 -6 1094 146 0 38 chr3 31411884 31412069 -196112509 - FRAM SINE Alu -6 170 1 2233 102 0 16 chr3 31412151 31412455 -196112123 - AluSx SINE Alu -13 299 1 514 266 0 0 chr3 31412459 31412568 -196112010 - MER33 DNA MER1_type -215 109 1 397 259 80 0 chr3 31412568 31412680 -196111898 - MIR SINE MIR -54 208 88 483 248 37 70 chr3 31412719 31412747 -196111831 + MIR SINE MIR 53 80 -182 2329 91 10 0 chr3 31412747 31413043 -196111535 - AluSx SINE Alu -13 299 1 483 248 37 70 chr3 31413043 31413228 -196111350 + MIR SINE MIR 80 259 -3 516 158 53 0 chr3 31413511 31413606 -196110972 - MLT1G1 LTR MaLR 0 595 496 215 267 67 27 chr3 31413636 31413711 -196110867 - L2 LINE L2 -24 3289 3212 189 0 0 0 chr3 31413978 31413999 -196110579 + (T)n Simple_repeat Simple_repeat 1 21 0 229 315 0 0 chr3 31414785 31414877 -196109701 + HAL1 LINE L1 826 917 -1590 298 307 22 0 chr3 31414916 31415053 -196109525 + L1MB7 LINE L1 5191 5330 -816 1192 186 5 18 chr3 31415084 31415305 -196109273 + AluJo SINE Alu 89 306 -6 876 286 69 31 chr3 31415306 31415892 -196108686 + L1MB7 LINE L1 5305 5922 -262 492 274 142 46 chr3 31415894 31416325 -196108253 - L2 LINE L2 -1 3312 2841 303 282 84 64 chr3 31416404 31416702 -196107876 - L2 LINE L2 -2571 743 440 1706 158 41 0 chr3 31417173 31417465 -196107113 - AluJb SINE Alu -4 308 5 350 305 8 23 chr3 31417878 31418006 -196106572 + MER5A DNA MER1_type 64 189 0 261 0 0 0 chr3 31418417 31418446 -196106132 + (CA)n Simple_repeat Simple_repeat 1 29 0 466 280 59 27 chr3 31418761 31418947 -196105631 - L2 LINE L2 -42 3271 3080 321 140 0 0 chr3 31419598 31419655 -196104923 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 2254 90 31 0 chr3 31419659 31419947 -196104631 - AluSp SINE Alu -16 297 1 253 226 57 113 chr3 31419947 31420071 -196104507 - L2 LINE L2 -1 3312 3196 249 83 0 0 chr3 31420299 31420335 -196104243 + (T)n Simple_repeat Simple_repeat 1 36 0 1677 179 27 7 chr3 31420356 31420652 -196103926 - AluJb SINE Alu -10 302 1 238 250 0 0 chr3 31420838 31420886 -196103692 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 101 0 0 chr3 31420904 31421182 -196103396 - AluSg SINE Alu -32 278 1 2161 132 0 0 chr3 31421182 31421485 -196103093 - AluSx SINE Alu -8 304 1 885 178 46 0 chr3 31421583 31421735 -196102843 - FRAM SINE Alu -22 154 1 1823 160 3 17 chr3 31421752 31422046 -196102532 + AluJb SINE Alu 1 290 -22 339 188 138 0 chr3 31422252 31422332 -196102246 - MER5A DNA MER1_type -84 105 15 544 315 55 14 chr3 31422348 31422567 -196102011 + MIR SINE MIR 35 262 0 2365 87 10 13 chr3 31423679 31423990 -196100588 - AluSp SINE Alu -3 310 1 281 190 52 16 chr3 31424140 31424257 -196100321 - MIR SINE MIR -64 144 71 261 83 0 0 chr3 31424446 31424482 -196100096 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 604 249 116 3 chr3 31424891 31425076 -196099502 + MIR SINE MIR 26 217 -45 2108 118 3 0 chr3 31425716 31426003 -196098575 + AluSx SINE Alu 1 288 -24 44 0 0 0 chr3 31426003 31426047 -196098531 + AT_rich Low_complexity Low_complexity 1 44 0 907 232 13 9 chr3 31426639 31426872 -196097706 + MIR SINE MIR 26 259 -3 288 271 49 65 chr3 31427092 31427271 -196097307 + L1MC4 LINE L1 7325 7511 -297 253 261 73 98 chr3 31427275 31427468 -196097110 + L1MC5 LINE L1 7354 7535 -426 1779 172 0 0 chr3 31427468 31427741 -196096837 + AluJo SINE Alu 1 273 -39 253 261 73 98 chr3 31427741 31427903 -196096675 + L1MC5 LINE L1 7535 7700 -261 2254 102 3 0 chr3 31427932 31428225 -196096353 - AluSx SINE Alu -18 294 1 2332 59 0 26 chr3 31430111 31430414 -196094164 - AluY SINE Alu -16 295 1 589 314 74 0 chr3 31430414 31430643 -196093935 - MIR SINE MIR -3 259 14 2341 102 0 0 chr3 31430938 31431241 -196093337 - AluSg SINE Alu -7 303 1 270 0 0 0 chr3 31431280 31431310 -196093268 + (TG)n Simple_repeat Simple_repeat 2 31 0 376 355 14 0 chr3 31431522 31431663 -196092915 + MIR3 SINE MIR 59 201 -7 243 253 205 0 chr3 31431906 31431989 -196092589 - L2 LINE L2 -20 3293 3194 1122 236 190 25 chr3 31432514 31432950 -196091628 - L1MC4 LINE L1 0 8042 7535 39 68 0 0 chr3 31432953 31433027 -196091551 + AT_rich Low_complexity Low_complexity 1 74 0 1001 165 0 29 chr3 31433205 31433375 -196091203 + FRAM SINE Alu 6 170 -6 194 283 19 19 chr3 31433395 31433448 -196091130 + L2 LINE L2 3210 3262 -10 2365 93 10 0 chr3 31434416 31434717 -196089861 - AluSx SINE Alu -7 305 2 1929 160 7 3 chr3 31435503 31435809 -196088769 - AluJb SINE Alu -5 307 1 425 266 0 119 chr3 31435901 31435962 -196088616 + MIR3 SINE MIR 50 117 -91 2318 95 0 19 chr3 31435962 31436277 -196088301 - AluSc SINE Alu 0 309 1 425 266 0 119 chr3 31436277 31436392 -196088186 + MIR3 SINE MIR 117 205 -3 221 284 27 14 chr3 31436644 31436718 -196087860 - MIR SINE MIR -123 139 65 21 0 0 0 chr3 31438138 31438159 -196086419 + AT_rich Low_complexity Low_complexity 1 21 0 233 132 0 19 chr3 31438986 31439039 -196085539 + (GGA)n Simple_repeat Simple_repeat 1 52 0 56 105 0 0 chr3 31439226 31439436 -196085142 + GC_rich Low_complexity Low_complexity 1 210 0 23 54 0 0 chr3 31439741 31439778 -196084800 + GC_rich Low_complexity Low_complexity 1 37 0 222 289 50 25 chr3 31439789 31439910 -196084668 + C-rich Low_complexity Low_complexity 5 128 0 24 32 0 0 chr3 31440022 31440053 -196084525 + GC_rich Low_complexity Low_complexity 1 31 0 338 255 130 104 chr3 31443658 31444167 -196080411 - L1M2 LINE L1 -5495 1354 833 234 0 0 0 chr3 31446648 31446674 -196077904 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2084 95 21 21 chr3 31446676 31446961 -196077617 - AluSg SINE Alu -25 285 1 441 27 0 13 chr3 31447209 31447285 -196077293 + AluY SINE Alu 123 292 -20 1645 174 33 7 chr3 31448103 31448402 -196076176 - AluJb SINE Alu -5 307 1 3135 161 29 25 chr3 31449262 31449545 -196075033 + L1MB4 LINE L1 5587 5868 -312 2306 79 0 3 chr3 31449545 31449836 -196074742 + AluY SINE Alu 1 290 -21 3135 161 29 25 chr3 31449836 31450141 -196074437 + L1MB4 LINE L1 5868 6177 -3 2174 89 72 0 chr3 31450281 31450572 -196074006 + AluSx SINE Alu 1 312 0 226 245 20 0 chr3 31451375 31451424 -196073154 + L2 LINE L2 3209 3258 -14 310 282 90 19 chr3 31451594 31451750 -196072828 - L1MC4 LINE L1 -2 8040 7874 2151 89 0 7 chr3 31452125 31452433 -196072145 + AluSc SINE Alu 3 308 0 273 311 194 0 chr3 31452650 31452753 -196071825 + L2 LINE L2 3141 3263 -9 396 324 176 23 chr3 31454177 31454523 -196070055 - L2 LINE L2 -6 3307 2909 834 281 134 75 chr3 31454566 31455350 -196069228 - L2 LINE L2 -598 2716 1887 2022 116 0 0 chr3 31455985 31456261 -196068317 - AluSg SINE Alu -30 280 5 641 253 296 18 chr3 31458513 31458905 -196065673 - L2 LINE L2 -2 3311 2811 844 216 19 12 chr3 31459017 31459179 -196065399 + FAM SINE Alu 3 165 -10 21 57 0 0 chr3 31460290 31460325 -196064253 + AT_rich Low_complexity Low_complexity 1 35 0 521 271 85 28 chr3 31460560 31460737 -196063841 - MIR SINE MIR -74 188 2 21 36 0 0 chr3 31461245 31461273 -196063305 + AT_rich Low_complexity Low_complexity 1 28 0 1832 155 7 4 chr3 31462300 31462578 -196062000 - AluJo SINE Alu -31 281 3 656 224 0 28 chr3 31462579 31462722 -196061856 - AluJo SINE Alu -170 142 4 197 0 71 0 chr3 31463538 31463566 -196061012 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 185 196 0 0 chr3 31463679 31463725 -196060853 + L3 LINE CR1 912 957 -620 503 268 147 18 chr3 31463951 31464175 -196060403 - MIR SINE MIR -2 260 8 21 57 0 0 chr3 31464249 31464284 -196060294 + AT_rich Low_complexity Low_complexity 1 35 0 1118 150 0 12 chr3 31464639 31464806 -196059772 - AluJb SINE Alu -14 298 134 2027 132 3 31 chr3 31464807 31465126 -196059452 - AluSx SINE Alu -2 310 1 186 254 48 48 chr3 31465232 31465295 -196059283 + L2 LINE L2 3209 3271 -1 1901 81 0 0 chr3 31465483 31465718 -196058860 + AluSq SINE Alu 1 235 -78 244 158 0 0 chr3 31465718 31465756 -196058822 + Alu SINE Alu 189 226 -73 808 107 18 0 chr3 31465756 31465868 -196058710 + AluSg/x SINE Alu 179 292 -17 1761 158 7 33 chr3 31465873 31466177 -196058401 + AluJb SINE Alu 5 300 -12 22 0 0 0 chr3 31466341 31466363 -196058215 + AT_rich Low_complexity Low_complexity 1 22 0 1642 175 67 3 chr3 31466835 31467120 -196057458 + AluJb SINE Alu 1 303 -9 24 32 0 0 chr3 31467173 31467204 -196057374 + AT_rich Low_complexity Low_complexity 1 31 0 387 331 31 0 chr3 31467313 31467443 -196057135 + MIR SINE MIR 19 152 -110 951 223 0 0 chr3 31467703 31467869 -196056709 + FRAM SINE Alu 1 166 0 24 32 0 0 chr3 31467948 31467979 -196056599 + AT_rich Low_complexity Low_complexity 1 31 0 232 268 163 26 chr3 31468251 31468308 -196056270 + MER5B DNA MER1_type 2 50 -128 1803 173 13 0 chr3 31468308 31468609 -196055969 + AluJo SINE Alu 1 305 -7 232 268 163 26 chr3 31468609 31468704 -196055874 + MER5B DNA MER1_type 50 175 -3 236 325 123 0 chr3 31469472 31469586 -196054992 - L2 LINE L2 0 3272 3145 624 289 42 12 chr3 31469709 31469875 -196054703 - MIR3 SINE MIR -21 187 17 870 204 102 0 chr3 31470092 31470308 -196054270 + MIR SINE MIR 4 241 -21 472 242 8 25 chr3 31470327 31470447 -196054131 - MIR SINE MIR -105 157 40 1938 167 7 3 chr3 31471179 31471485 -196053093 - AluJb SINE Alu -3 309 3 2473 233 73 39 chr3 31471491 31471609 -196052969 - L1MEc LINE L1 -4046 2350 2237 1946 138 0 16 chr3 31471609 31471920 -196052658 - AluSx SINE Alu -6 306 1 2473 233 73 39 chr3 31471920 31472302 -196052276 - L1MEc LINE L1 -4159 2237 1869 2206 103 0 3 chr3 31472302 31472618 -196051960 + AluY SINE Alu 1 315 0 2473 233 73 39 chr3 31472618 31473116 -196051462 - L1MEc LINE L1 -4527 1869 1316 2642 221 67 42 chr3 31473121 31473940 -196050638 - L1MEc LINE L1 -5226 1170 331 672 246 17 6 chr3 31473965 31474140 -196050438 - L1MEc LINE L1 -6183 213 37 459 0 0 0 chr3 31475319 31475370 -196049208 + (TG)n Simple_repeat Simple_repeat 1 51 0 1044 195 5 5 chr3 31475387 31475582 -196048996 - AluJb SINE Alu -32 280 86 259 299 52 0 chr3 31476375 31476452 -196048126 + L2 LINE L2 3223 3303 -10 287 263 187 56 chr3 31477480 31477843 -196046735 - L1ME LINE L1 -288 5878 5459 232 179 0 0 chr3 31477954 31477993 -196046585 - L1ME LINE L1 -1369 4777 4739 * 308 316 111 54 chr3 31477989 31478305 -196046273 + L1 LINE L1 4782 5115 -1031 261 0 0 0 chr3 31478682 31478711 -196045867 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 327 49 0 0 chr3 31478710 31478751 -196045827 + (TG)n Simple_repeat Simple_repeat 2 42 0 1426 223 17 59 chr3 31478793 31479147 -196045431 - MER58B DNA MER1_type -2 339 1 727 178 0 16 chr3 31479402 31479532 -196045046 + FLAM_A SINE Alu 1 122 -11 2243 115 3 0 chr3 31479535 31479839 -196044739 + AluSx SINE Alu 1 305 -7 421 230 0 0 chr3 31480271 31480345 -196044233 + MER94 DNA DNA 61 134 0 2552 72 0 3 chr3 31480609 31480915 -196043663 - AluY SINE Alu -6 305 1 305 169 36 72 chr3 31481106 31481189 -196043389 - L1MC4a LINE L1 -1873 5935 5856 220 191 167 36 chr3 31481201 31481285 -196043293 - MIR SINE MIR -79 183 89 2130 148 0 3 chr3 31481307 31481617 -196042961 + AluSx SINE Alu 1 309 -3 1792 149 88 145 chr3 31481999 31482462 -196042116 - L1MB7 LINE L1 -279 5905 5490 4731 74 2 0 chr3 31482462 31483070 -196041508 - L1PA8 LINE L1 -2 6170 5562 1792 149 88 145 chr3 31483070 31483277 -196041301 - L1MB7 LINE L1 -694 5490 5273 854 130 0 0 chr3 31483306 31483421 -196041157 - AluJb SINE Alu -197 115 1 823 222 19 5 chr3 31483423 31483630 -196040948 - L1MB7 LINE L1 -863 5283 5074 820 168 84 0 chr3 31483648 31483791 -196040787 - FRAM SINE Alu -21 155 1 1556 171 33 40 chr3 31483802 31484106 -196040472 - AluJo SINE Alu -10 302 1 3299 203 27 90 chr3 31484109 31484639 -196039939 - L1MB7 LINE L1 -1091 5055 4493 1601 169 48 14 chr3 31484639 31484929 -196039649 + AluJo SINE Alu 1 300 -12 3299 203 27 90 chr3 31484929 31484945 -196039633 - L1MB7 LINE L1 -1653 4493 4478 2556 166 19 2 chr3 31484945 31485361 -196039217 + MSTB LTR MaLR 4 426 0 3299 203 27 90 chr3 31485361 31485707 -196038871 - L1MB7 LINE L1 -1668 4478 4112 1967 135 3 35 chr3 31485707 31486025 -196038553 - AluJb SINE Alu -4 308 1 2097 95 84 0 chr3 31486028 31486313 -196038265 - AluSp SINE Alu -4 309 1 3299 203 27 90 chr3 31486313 31486525 -196038053 - L1MB7 LINE L1 -2036 4110 4015 694 183 39 28 chr3 31486530 31486710 -196037868 - L1M4 LINE L1 -961 5185 5004 389 250 59 99 chr3 31487012 31487096 -196037482 + MLT1K LTR MaLR 102 179 -409 2026 128 49 0 chr3 31487096 31487384 -196037194 + AluSx SINE Alu 1 302 -10 389 250 59 99 chr3 31487384 31487451 -196037127 + MLT1K LTR MaLR 179 247 -341 479 294 104 5 chr3 31487535 31487736 -196036842 + MLT1K LTR MaLR 366 586 -2 2693 48 0 3 chr3 31488668 31488979 -196035599 + AluY SINE Alu 1 310 -1 2204 94 17 10 chr3 31489147 31489435 -196035143 - AluSg SINE Alu -7 303 14 760 216 7 0 chr3 31490001 31490149 -196034429 + FRAM SINE Alu 25 173 -3 1071 145 140 0 chr3 31490968 31491161 -196033417 - AluSg/x SINE Alu -10 299 80 2349 104 0 0 chr3 31491441 31491740 -196032838 - AluSx SINE Alu -13 299 1 368 263 0 10 chr3 31492716 31492815 -196031763 + MIR SINE MIR 51 148 -114 4342 121 57 57 chr3 31494524 31495309 -196029269 + LTR1 LTR ERV1 1 785 0 1634 182 0 0 chr3 31495844 31496108 -196028470 - AluJo SINE Alu -10 302 39 2084 256 175 47 chr3 31496112 31496644 -196027934 - HAL1 LINE L1 0 2507 2045 2431 88 3 0 chr3 31496644 31496950 -196027628 - AluSp SINE Alu -6 307 1 2084 256 175 47 chr3 31496950 31497895 -196026683 - HAL1 LINE L1 -462 2045 840 745 242 172 0 chr3 31497899 31498114 -196026464 - HAL1 LINE L1 -1811 696 445 1574 179 58 46 chr3 31498126 31498455 -196026123 - MLT1E1 LTR MaLR -9 645 313 1516 167 4 19 chr3 31498481 31498744 -196025834 - AluJb SINE Alu -23 289 31 278 295 0 0 chr3 31500189 31500294 -196024284 + T-rich Low_complexity Low_complexity 1 105 0 260 203 78 0 chr3 31500555 31500619 -196023959 - L1ME1 LINE L1 -5 6161 6093 235 152 30 106 chr3 31501520 31501586 -196022992 - MLT1G LTR MaLR -190 400 340 418 204 45 11 chr3 31501833 31501921 -196022657 - MLT1F1 LTR MaLR -476 91 1 198 0 0 0 chr3 31502167 31502189 -196022389 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 7051 53 5 54 chr3 31502189 31503894 -196020684 - SVA Other Other -683 1363 18 1784 210 51 17 chr3 31504006 31504229 -196020349 - Charlie1b DNA MER1_type -2238 523 309 2422 78 0 3 chr3 31504229 31504522 -196020056 + AluSc SINE Alu 1 292 -17 1784 210 51 17 chr3 31504522 31504765 -196019813 - Charlie1b DNA MER1_type -2452 309 41 2464 61 0 3 chr3 31504957 31505250 -196019328 + AluSg SINE Alu 1 292 -18 258 208 94 0 chr3 31505318 31505371 -196019207 + MER94 DNA DNA 1 58 -76 2299 80 0 3 chr3 31507275 31507563 -196017015 - AluSc SINE Alu -22 287 1 181 0 0 65 chr3 31508114 31508145 -196016433 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1507 173 85 0 chr3 31508266 31508526 -196016052 + AluJo SINE Alu 12 293 -19 434 207 269 28 chr3 31508567 31508712 -196015866 - MER5A DNA MER1_type -6 183 4 231 310 42 0 chr3 31508822 31508893 -196015685 + MIR SINE MIR 28 101 -161 1109 154 32 41 chr3 31508903 31509124 -196015454 - MER20 DNA MER1_type 0 219 1 3314 116 7 37 chr3 31509930 31510473 -196014105 + MER1A DNA MER1_type 1 527 0 1537 151 9 107 chr3 31511457 31511594 -196012984 + AluJb SINE Alu 1 91 -211 2376 87 0 0 chr3 31511594 31511882 -196012696 + AluSq SINE Alu 1 288 -25 1537 151 9 107 chr3 31511882 31512063 -196012515 + AluJb SINE Alu 91 288 -14 4586 114 96 31 chr3 31513193 31513965 -196010613 - LTR12 LTR ERV1 0 826 5 2455 194 25 26 chr3 31513980 31514583 -196009995 - pTR5 LTR ERV1 -1093 1345 744 1792 163 3 17 chr3 31515129 31515423 -196009155 + AluJb SINE Alu 1 290 -22 339 188 138 0 chr3 31515629 31515709 -196008869 - MER5A DNA MER1_type -84 105 15 544 315 55 14 chr3 31515725 31515944 -196008634 + MIR SINE MIR 35 262 0 2275 100 10 13 chr3 31517056 31517367 -196007211 - AluSp SINE Alu -3 310 1 281 190 52 16 chr3 31517517 31517634 -196006944 - MIR SINE MIR -64 144 71 261 83 0 0 chr3 31517823 31517859 -196006719 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 604 249 116 3 chr3 31518268 31518453 -196006125 + MIR SINE MIR 26 217 -45 2108 118 3 0 chr3 31519093 31519380 -196005198 + AluSx SINE Alu 1 288 -24 44 0 0 0 chr3 31519380 31519424 -196005154 + AT_rich Low_complexity Low_complexity 1 44 0 907 232 13 9 chr3 31520016 31520249 -196004329 + MIR SINE MIR 26 259 -3 288 271 49 65 chr3 31520469 31520648 -196003930 + L1MC4 LINE L1 7325 7511 -297 253 261 73 98 chr3 31520652 31520845 -196003733 + L1MC5 LINE L1 7354 7535 -426 1779 172 0 0 chr3 31520845 31521118 -196003460 + AluJo SINE Alu 1 273 -39 253 261 73 98 chr3 31521118 31521280 -196003298 + L1MC5 LINE L1 7535 7700 -261 2101 103 3 3 chr3 31521309 31521591 -196002987 - AluSx SINE Alu -18 294 13 884 149 32 0 chr3 31521731 31521885 -196002693 + AluSc SINE Alu 150 308 -1 2181 107 0 17 chr3 31522194 31522494 -196002084 - AluSx SINE Alu -17 295 1 736 178 0 30 chr3 31522611 31522738 -196001840 - Charlie1 DNA MER1_type 0 2761 2637 623 152 96 40 chr3 31522738 31522863 -196001715 + AluJo SINE Alu 1 132 -170 2360 59 0 26 chr3 31524502 31524805 -195999773 - AluY SINE Alu -16 295 1 526 325 23 0 chr3 31524805 31525027 -195999551 - MIR SINE MIR -3 259 34 2360 102 0 0 chr3 31525329 31525632 -195998946 - AluSg SINE Alu -7 303 1 270 0 0 0 chr3 31525671 31525701 -195998877 + (TG)n Simple_repeat Simple_repeat 2 31 0 340 355 14 0 chr3 31525913 31526054 -195998524 + MIR3 SINE MIR 59 201 -7 215 253 205 0 chr3 31526297 31526380 -195998198 - L2 LINE L2 -20 3293 3194 1086 236 190 25 chr3 31526906 31527342 -195997236 - L1MC4 LINE L1 0 8042 7535 39 68 0 0 chr3 31527345 31527419 -195997159 + AT_rich Low_complexity Low_complexity 1 74 0 1009 165 0 29 chr3 31527597 31527767 -195996811 + AluJo SINE Alu 142 306 -6 2382 93 10 0 chr3 31528808 31529109 -195995469 - AluSx SINE Alu -7 305 2 1679 161 3 37 chr3 31529895 31530194 -195994384 - AluJb SINE Alu -5 307 19 2298 101 0 25 chr3 31530368 31530685 -195993893 - AluSx SINE Alu -3 309 1 1000 183 0 0 chr3 31530691 31530866 -195993712 - FRAM SINE Alu 0 176 2 417 264 182 0 chr3 31531085 31531233 -195993345 - MER5A DNA MER1_type -8 181 7 313 148 0 0 chr3 31531770 31531824 -195992754 - L1MC4 LINE L1 0 8042 7989 3298 162 43 14 chr3 31531827 31532352 -195992226 + L1MB5 LINE L1 5550 6095 -79 2078 114 24 0 chr3 31532352 31532650 -195991928 - AluY SINE Alu -6 305 1 3298 162 43 14 chr3 31532650 31532699 -195991879 + L1MB5 LINE L1 6095 6141 -33 1004 181 5 42 chr3 31532704 31532897 -195991681 + AluJo SINE Alu 5 190 -122 904 166 0 0 chr3 31533031 31533182 -195991396 + FRAM SINE Alu 20 170 -6 1087 84 0 52 chr3 31533194 31533349 -195991229 + AluSq/x SINE Alu 1 147 -166 318 302 151 0 chr3 31533353 31533479 -195991099 - MIR SINE MIR -70 192 48 351 0 0 0 chr3 31534183 31534222 -195990356 + (TAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr3 31534222 31534243 -195990335 + AT_rich Low_complexity Low_complexity 1 21 0 2216 82 0 4 chr3 31534243 31534524 -195990054 - AluSx SINE Alu -32 280 1 2428 101 0 0 chr3 31534925 31535232 -195989346 + AluSq SINE Alu 1 307 -6 383 349 32 24 chr3 31535233 31535482 -195989096 - MIR SINE MIR -2 260 10 203 274 104 96 chr3 31536620 31536755 -195987823 - MIR3 SINE MIR -60 148 13 351 310 21 35 chr3 31536944 31537089 -195987489 + MER91A DNA MER1_type 1 143 -53 278 250 90 20 chr3 31537099 31537199 -195987379 + MER91A DNA MER1_type 86 192 -4 413 267 78 30 chr3 31537204 31537448 -195987130 + MLT1K LTR MaLR 30 320 -268 300 235 106 12 chr3 31537529 31537614 -195986964 + MLT1K LTR MaLR 496 588 0 228 135 0 0 chr3 31538053 31538090 -195986488 + (A)n Simple_repeat Simple_repeat 1 37 0 213 39 0 0 chr3 31538133 31538159 -195986419 + (TC)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 31538676 31538698 -195985880 + AT_rich Low_complexity Low_complexity 1 22 0 2370 93 3 0 chr3 31538831 31539141 -195985437 + AluY SINE Alu 1 311 0 843 211 53 35 chr3 31539184 31539417 -195985161 - MLT1D LTR MaLR -239 228 5 1866 132 3 33 chr3 31540082 31540385 -195984193 - AluSx SINE Alu -18 294 1 2051 238 170 28 chr3 31540607 31540958 -195983620 + L2 LINE L2 413 713 -2601 1235 158 143 33 chr3 31540958 31541230 -195983348 - AluJo SINE Alu 0 302 1 2051 238 170 28 chr3 31541230 31541772 -195982806 + L2 LINE L2 713 1177 -2137 2394 86 3 3 chr3 31541772 31542075 -195982503 + AluY SINE Alu 1 303 -8 2051 238 170 28 chr3 31542075 31542238 -195982340 + L2 LINE L2 1177 1686 -1628 2133 108 14 0 chr3 31542251 31542537 -195982041 + AluSx SINE Alu 1 290 -22 260 214 79 126 chr3 31542542 31542614 -195981964 + L1MC4a LINE L1 5776 5850 -1958 729 169 8 15 chr3 31542614 31542744 -195981834 + FLAM_C SINE Alu 5 133 0 260 214 79 126 chr3 31542744 31542840 -195981738 + L1MC4a LINE L1 5850 5934 -1874 1566 175 36 26 chr3 31542840 31543148 -195981430 + AluJo SINE Alu 1 311 -1 260 214 79 126 chr3 31543148 31543193 -195981385 + L1MC4a LINE L1 5934 5980 -1828 789 260 275 14 chr3 31543393 31543865 -195980713 + L2 LINE L2 2704 3309 -4 290 245 49 10 chr3 31543881 31543983 -195980595 - MIR SINE MIR -86 176 71 1672 221 22 48 chr3 31544187 31544361 -195980217 + L1MD1 LINE L1 5735 5912 -330 2328 96 0 10 chr3 31544361 31544662 -195979916 - AluSg SINE Alu -12 298 1 1672 221 22 48 chr3 31544662 31544681 -195979897 + L1MD1 LINE L1 5912 5930 -312 2101 147 18 6 chr3 31544681 31545014 -195979564 + MER1B DNA MER1_type 1 337 0 1672 221 22 48 chr3 31545014 31545176 -195979402 + L1MD1 LINE L1 5930 6082 -160 253 175 0 38 chr3 31545230 31545310 -195979268 + T-rich Low_complexity Low_complexity 5 81 0 366 158 11 33 chr3 31545322 31545505 -195979073 + T-rich Low_complexity Low_complexity 2 180 0 363 218 13 26 chr3 31545548 31545704 -195978874 + T-rich Low_complexity Low_complexity 3 156 0 186 79 53 0 chr3 31545710 31545748 -195978830 + (TTGG)n Simple_repeat Simple_repeat 1 40 0 769 184 125 0 chr3 31545889 31546057 -195978521 - L1MC4 LINE L1 -556 7486 7298 1719 65 0 30 chr3 31546066 31546297 -195978281 + AluY SINE Alu 88 311 0 1607 181 0 38 chr3 31546550 31546842 -195977736 + AluJo SINE Alu 1 281 -31 1943 116 14 130 chr3 31547037 31547067 -195977511 + MER47A DNA MER2_type 1 33 -2290 1814 186 10 0 chr3 31547067 31547362 -195977216 - AluJb SINE Alu -14 298 1 1943 116 14 130 chr3 31547362 31547485 -195977093 + MER47A DNA MER2_type 33 169 -2154 2292 102 0 20 chr3 31547485 31547789 -195976789 + AluSx SINE Alu 1 298 -14 1943 116 14 130 chr3 31547789 31547827 -195976751 + MER47A DNA MER2_type 169 210 -2113 1757 170 31 7 chr3 31547827 31548116 -195976462 + AluJo SINE Alu 1 296 -16 1943 116 14 130 chr3 31548116 31548336 -195976242 + MER47A DNA MER2_type 210 366 0 219 259 19 0 chr3 31549304 31549358 -195975220 + CT-rich Low_complexity Low_complexity 2 56 0 651 121 0 0 chr3 31549485 31549576 -195975002 - AluJ/FLAM SINE Alu -217 95 5 457 170 179 0 chr3 31549665 31549771 -195974807 - L1ME4a LINE L1 -33 6088 5964 275 302 60 9 chr3 31550180 31550296 -195974282 + L2 LINE L2 2659 2780 -534 1137 201 48 98 chr3 31550368 31550543 -195974035 - MER20B DNA MER1_type -21 762 580 1451 178 91 18 chr3 31550543 31550819 -195973759 - AluJb SINE Alu -16 296 1 1137 201 48 98 chr3 31550819 31551060 -195973518 - MER20B DNA MER1_type -203 580 367 596 297 58 49 chr3 31551086 31551497 -195973081 + L2 LINE L2 2824 3238 -75 264 100 0 0 chr3 31551550 31551590 -195972988 + (GA)n Simple_repeat Simple_repeat 1 40 0 2314 71 3 0 chr3 31552265 31552547 -195972031 + AluSp SINE Alu 21 303 -10 691 151 131 75 chr3 31552728 31552927 -195971651 + MLT1D LTR MaLR 1 210 -295 543 130 32 20 chr3 31552928 31553051 -195971527 + MLT1E2 LTR MaLR 372 626 0 1660 169 3 27 chr3 31553254 31553550 -195971028 - AluJo SINE Alu -13 299 11 2400 93 3 0 chr3 31553586 31553896 -195970682 - AluSp SINE Alu -2 311 1 1735 204 20 17 chr3 31554135 31554492 -195970086 + MLT1A1 LTR MaLR 8 365 0 349 326 30 0 chr3 31554935 31555070 -195969508 + MER5B DNA MER1_type 3 141 -37 1477 129 57 12 chr3 31555551 31555799 -195968779 - AluSg SINE Alu -11 299 41 185 153 0 51 chr3 31556022 31556081 -195968497 + C-rich Low_complexity Low_complexity 1 56 0 215 296 74 12 chr3 31556888 31556969 -195967609 + L2 LINE L2 3183 3268 -4 549 146 194 0 chr3 31558197 31558300 -195966278 + FLAM_A SINE Alu 1 123 -10 1147 72 0 26 chr3 31559468 31559621 -195964957 + AluY SINE Alu 163 311 0 773 163 0 37 chr3 31560487 31560622 -195963956 + AluJb SINE Alu 158 287 -25 216 97 0 0 chr3 31560622 31560653 -195963925 + (TA)n Simple_repeat Simple_repeat 2 32 0 2079 107 34 7 chr3 31564475 31564773 -195959805 + AluSx SINE Alu 1 306 -6 226 312 54 50 chr3 31565434 31565655 -195958923 + L2 LINE L2 157 378 -2936 367 300 34 68 chr3 31565820 31566082 -195958496 - L2 LINE L2 -314 2999 2751 2165 117 3 0 chr3 31566168 31566468 -195958110 + AluY SINE Alu 1 301 -10 2060 123 0 43 chr3 31566639 31566965 -195957613 + AluSx SINE Alu 1 312 0 1768 155 16 35 chr3 31567453 31567769 -195956809 - AluJb SINE Alu -1 311 2 2311 109 0 3 chr3 31568077 31568390 -195956188 + AluSx SINE Alu 1 312 0 2500 229 158 65 chr3 31568983 31569405 -195955173 + HAL1 LINE L1 372 753 -1754 1902 169 0 3 chr3 31569405 31569701 -195954877 - AluJb SINE Alu -17 295 1 2500 229 158 65 chr3 31569701 31570169 -195954409 + HAL1 LINE L1 753 1176 -1331 1948 123 0 0 chr3 31570169 31570429 -195954149 + AluSx SINE Alu 1 260 -52 2500 229 158 65 chr3 31570429 31570498 -195954080 + HAL1 LINE L1 1176 1237 -1270 1401 151 19 158 chr3 31570498 31570922 -195953656 - MLT1A1 LTR MaLR 0 365 1 2500 229 158 65 chr3 31570922 31571030 -195953548 + HAL1 LINE L1 1237 1541 -966 749 240 87 49 chr3 31571036 31571279 -195953299 + L1ME3A LINE L1 5594 5851 -319 830 140 0 22 chr3 31571279 31571415 -195953163 - FLAM_C SINE Alu 0 133 1 749 240 87 49 chr3 31571415 31571459 -195953119 + L1ME3A LINE L1 5851 5892 -278 827 270 72 36 chr3 31571694 31572001 -195952577 + HAL1 LINE L1 1542 1859 -648 309 180 6 155 chr3 31572043 31572163 -195952415 + HAL1 LINE L1 1678 1770 -737 2316 116 0 0 chr3 31572163 31572465 -195952113 + AluSx SINE Alu 1 302 -10 309 180 6 155 chr3 31572465 31572505 -195952073 + HAL1 LINE L1 1770 1814 -693 1184 152 20 15 chr3 31572736 31572940 -195951638 + Tigger2a DNA MER2_type 5 209 -225 482 200 0 0 chr3 31572948 31573033 -195951545 + AluSg/x SINE Alu 181 265 -44 225 0 0 0 chr3 31573176 31573201 -195951377 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2143 109 0 0 chr3 31573205 31573480 -195951098 - AluSx SINE Alu -37 275 1 1300 137 46 33 chr3 31573480 31573721 -195950857 + Tigger2a DNA MER2_type 201 444 0 1895 225 42 22 chr3 31573739 31574193 -195950385 + Charlie1a DNA MER1_type 1 463 -992 2135 130 3 0 chr3 31575164 31575472 -195949106 - AluSg SINE Alu -1 309 1 378 268 100 42 chr3 31575688 31576133 -195948445 - L1MC4a LINE L1 -304 5817 5317 207 0 0 0 chr3 31576217 31576240 -195948338 + (T)n Simple_repeat Simple_repeat 1 23 0 225 0 0 0 chr3 31576284 31576309 -195948269 + (TG)n Simple_repeat Simple_repeat 2 26 0 852 150 0 15 chr3 31576473 31576606 -195947972 + FLAM_C SINE Alu 3 133 0 300 300 0 0 chr3 31576830 31576880 -195947698 + G-rich Low_complexity Low_complexity 1 50 0 1450 94 0 0 chr3 31576882 31577062 -195947516 + (G)n Simple_repeat Simple_repeat 1 180 0 1203 158 0 0 chr3 31577062 31577227 -195947351 + G-rich Low_complexity Low_complexity 1 165 0 2149 126 0 0 chr3 31578284 31578586 -195945992 + AluSx SINE Alu 1 302 -10 2147 120 0 7 chr3 31578878 31579177 -195945401 - AluSx SINE Alu -15 297 1 4439 48 2 0 chr3 31579249 31579950 -195944628 + L1P2 LINE L1 5084 5787 -367 736 57 9 3 chr3 31579951 31580178 -195944400 + AluY SINE Alu 2 305 -6 216 0 0 0 chr3 31580898 31580922 -195943656 + (A)n Simple_repeat Simple_repeat 1 24 0 342 296 96 16 chr3 31582461 31582586 -195941992 - L2 LINE L2 -1 3271 3137 275 242 116 21 chr3 31582729 31582824 -195941754 - MER66B LTR ERV1 -140 346 243 1743 232 59 32 chr3 31582891 31583366 -195941212 + MLT1D LTR MaLR 18 505 0 770 263 225 15 chr3 31583369 31583941 -195940637 + L2 LINE L2 2626 3313 0 285 331 24 0 chr3 31586733 31586860 -195937718 + G-rich Low_complexity Low_complexity 2 131 0 334 132 0 0 chr3 31587139 31587192 -195937386 + MER58 DNA MER1_type 128 2385 -35 533 131 215 0 chr3 31589372 31589479 -195935099 + FLAM_C SINE Alu 2 131 -2 317 239 374 18 chr3 31589552 31589774 -195934804 + L2 LINE L2 2639 2939 -375 2064 128 7 0 chr3 31589907 31590211 -195934367 - AluSx SINE Alu -6 306 1 811 131 39 0 chr3 31590212 31590342 -195934236 - AluJo SINE Alu -177 135 1 309 174 41 8 chr3 31590370 31590592 -195933986 + AluJb SINE Alu 1 293 -9 356 227 164 18 chr3 31590602 31590712 -195933866 - MIR SINE MIR -87 175 50 2053 91 40 0 chr3 31590725 31591022 -195933556 - AluSx SINE Alu -3 309 1 1898 141 10 0 chr3 31591149 31591440 -195933138 - AluJb SINE Alu -18 294 1 1406 260 105 24 chr3 31591440 31591557 -195933021 - L1MC4a LINE L1 -1850 5958 5852 2075 117 7 0 chr3 31591557 31591855 -195932723 - AluSq SINE Alu -13 300 1 1406 260 105 24 chr3 31591855 31592240 -195932338 - L1MC4a LINE L1 -1956 5852 5415 1725 122 42 14 chr3 31592740 31593026 -195931552 - AluSx SINE Alu -18 294 1 866 240 237 9 chr3 31593163 31593496 -195931082 - MLT1I LTR MaLR 0 409 1 568 138 15 69 chr3 31593609 31593676 -195930902 - MER97c DNA MER1_type? -916 174 115 1665 174 3 3 chr3 31593676 31593986 -195930592 + AluJb SINE Alu 1 310 0 568 138 15 69 chr3 31593986 31594047 -195930531 - MER97c DNA MER1_type? -975 115 52 730 210 153 0 chr3 31594176 31594352 -195930226 - MER3 DNA MER1_type -4 205 3 2073 105 0 3 chr3 31594354 31594676 -195929902 - AluSx SINE Alu 0 321 1 473 193 0 35 chr3 31594701 31594846 -195929732 + CT-rich Low_complexity Low_complexity 2 141 0 801 134 0 8 chr3 31595562 31595681 -195928897 + FLAM_C SINE Alu 1 118 -15 1535 193 0 0 chr3 31596121 31596395 -195928183 + AluJb SINE Alu 1 274 -38 371 21 21 0 chr3 31596419 31596467 -195928111 + (CA)n Simple_repeat Simple_repeat 2 50 0 855 143 64 0 chr3 31596476 31596660 -195927918 + AluSg/x SINE Alu 136 328 0 234 333 11 0 chr3 31596886 31596976 -195927602 - LTR16A1 LTR ERVL -19 438 348 180 0 0 0 chr3 31597014 31597034 -195927544 + (A)n Simple_repeat Simple_repeat 1 20 0 1908 125 3 28 chr3 31597034 31597353 -195927225 + AluSx SINE Alu 1 311 -1 24 32 0 0 chr3 31597354 31597385 -195927193 + AT_rich Low_complexity Low_complexity 1 31 0 291 263 187 56 chr3 31598366 31598729 -195925849 - L1ME LINE L1 -288 5878 5459 195 42 0 0 chr3 31599538 31599562 -195925016 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1632 145 26 35 chr3 31599662 31599973 -195924605 + AluJb SINE Alu 2 309 -3 198 0 0 0 chr3 31600587 31600609 -195923969 + (A)n Simple_repeat Simple_repeat 1 22 0 19749 42 0 2 chr3 31651091 31653647 -195870931 - L1P LINE L1 -2974 3172 623 756 42 0 0 chr3 31653645 31653740 -195870838 - L1P LINE L1 -6048 98 4 * 421 273 191 9 chr3 31655112 31655369 -195869209 + L1MC1 LINE L1 5621 5808 -313 223 267 167 0 chr3 31655874 31655964 -195868614 + MIR3 SINE MIR 103 207 -1 840 238 0 22 chr3 31656803 31656988 -195867590 + MIR SINE MIR 82 262 0 1189 215 74 60 chr3 31657321 31657768 -195866810 - LTR37B LTR ERV1 -10 458 6 296 207 138 0 chr3 31657773 31657860 -195866718 + L2 LINE L2 3134 3232 -40 1390 68 37 0 chr3 31657873 31658063 -195866515 + MER30 DNA MER1_type 1 197 -33 226 270 80 15 chr3 31658243 31658380 -195866198 - L1 LINE L1 -2412 3734 3589 41019 31 21 1 chr3 31658628 31664662 -195859916 - L1PA2 LINE L1 0 6155 1 2222 116 0 7 chr3 31664895 31665197 -195859381 - AluSx SINE Alu -12 300 1 204 111 0 0 chr3 31666012 31666048 -195858530 + (CAT)n Simple_repeat Simple_repeat 3 38 0 1264 150 4 13 chr3 31666264 31666490 -195858088 + L1MC1 LINE L1 6101 6324 -9 278 269 0 15 chr3 31666657 31666724 -195857854 - L2 LINE L2 -711 2603 2538 312 261 41 7 chr3 31666732 31666875 -195857703 - L1MC5 LINE L1 0 8042 7801 3397 135 11 11 chr3 31666897 31667460 -195857118 + L1PA15 LINE L1 5600 6162 -3 21 0 0 0 chr3 31667460 31667481 -195857097 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr3 31667724 31667753 -195856825 + (CA)n Simple_repeat Simple_repeat 1 29 0 315 225 93 99 chr3 31667825 31668007 -195856571 - L1MC5 LINE L1 -579 7382 7202 469 290 61 73 chr3 31668100 31668389 -195856189 - L1ME3A LINE L1 -260 5910 5619 1024 214 27 27 chr3 31668389 31668613 -195855965 - MER58A DNA MER1_type 0 224 1 469 290 61 73 chr3 31668613 31668979 -195855599 - L1ME3A LINE L1 -551 5619 5263 696 288 105 80 chr3 31668994 31669592 -195854986 - L1ME3A LINE L1 -893 5253 4641 386 348 0 7 chr3 31669597 31669732 -195854846 - MIR SINE MIR -118 144 11 274 262 145 46 chr3 31669762 31669941 -195854637 + MIR SINE MIR 5 211 -51 1636 249 51 39 chr3 31669965 31670474 -195854104 + MLT2B1 LTR ERVL 6 520 0 5886 195 43 9 chr3 31670477 31673826 -195850752 + ERVL-B1 LTR ERVL 4 3563 -2201 2204 117 17 0 chr3 31673826 31674125 -195850453 + AluSx SINE Alu 1 304 -8 5886 195 43 9 chr3 31674125 31674176 -195850402 + ERVL-B1 LTR ERVL 3563 3611 -2153 938 189 11 0 chr3 31674176 31674361 -195850217 + MLT1B LTR MaLR 204 390 0 505 221 18 9 chr3 31675105 31675218 -195849360 - LTR16A1 LTR ERVL 0 457 344 230 301 105 0 chr3 31675495 31675628 -195848950 + L1MEc LINE L1 789 935 -5461 1918 127 25 4 chr3 31675635 31675937 -195848641 + AluSx SINE Alu 1 308 0 931 244 58 75 chr3 31676081 31676714 -195847864 - HAL1 LINE L1 -165 2342 1548 1434 106 45 39 chr3 31676855 31677167 -195847411 - L1PBa LINE L1 -4115 2748 2435 764 298 11 0 chr3 31677173 31677455 -195847123 - L1PBa LINE L1 -6573 290 6 408 271 42 54 chr3 31677469 31677635 -195846943 + L2 LINE L2 3146 3309 -4 368 309 0 54 chr3 31677710 31677859 -195846719 + MIR SINE MIR 51 191 -71 495 259 45 68 chr3 31677903 31678123 -195846455 - MIR SINE MIR -2 260 46 216 200 0 0 chr3 31678270 31678315 -195846263 + T-rich Low_complexity Low_complexity 1 45 0 17412 35 3 1 chr3 31678318 31681209 -195843369 - L1PA4 LINE L1 -3 6152 3256 755 250 7 0 chr3 31683323 31683467 -195841111 + Charlie1 DNA MER1_type 1 145 -2616 4857 115 7 12 chr3 31683468 31684209 -195840369 + L1P LINE L1 762 1498 -4648 2083 113 39 0 chr3 31684399 31684683 -195839895 + AluSg1 SINE Alu 1 295 -14 1754 240 66 35 chr3 31685158 31685733 -195838845 - MLT1E LTR MaLR 0 593 1 21 36 0 0 chr3 31686061 31686089 -195838489 + AT_rich Low_complexity Low_complexity 1 28 0 228 216 0 0 chr3 31687817 31687868 -195836710 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 245 152 0 0 chr3 31687870 31687916 -195836662 - LTR66 LTR ERVL -171 439 394 5053 160 40 115 chr3 31688202 31689528 -195835050 - MER52A LTR ERV1 0 1755 461 556 179 0 0 chr3 31689530 31689636 -195834942 + AluSg/x SINE Alu 198 303 -9 397 207 60 10 chr3 31689668 31689780 -195834798 - MER52C LTR ERV1 -1179 100 3 315 252 70 35 chr3 31689833 31689976 -195834602 + MER103 DNA DNA 2 149 -17 342 0 0 0 chr3 31690002 31690040 -195834538 + (T)n Simple_repeat Simple_repeat 1 38 0 1047 130 7 0 chr3 31691106 31691275 -195833303 - AluSg/x SINE Alu 0 309 140 2341 106 0 0 chr3 31691535 31691847 -195832731 + AluSx SINE Alu 1 312 0 894 221 82 4 chr3 31691848 31692111 -195832467 + MSTD LTR MaLR 88 392 -4 1037 163 44 5 chr3 31692113 31692316 -195832262 - L1ME2 LINE L1 -261 5903 5693 389 175 0 38 chr3 31692516 31692767 -195831811 + AluJo SINE Alu 1 302 0 3349 142 77 18 chr3 31692860 31693467 -195831111 + L1MB2 LINE L1 5417 6059 -112 883 167 25 0 chr3 31693468 31693630 -195830948 + L1MA3 LINE L1 6135 6300 -5 633 119 0 79 chr3 31693633 31693713 -195830865 + L1MB2 LINE L1 6051 6119 -52 2443 84 0 0 chr3 31693713 31694012 -195830566 + AluY SINE Alu 1 299 -12 633 119 0 79 chr3 31694012 31694057 -195830521 + L1MB2 LINE L1 6119 6166 -5 369 244 189 30 chr3 31694094 31694295 -195830283 - MLT1L LTR MaLR -180 435 203 1557 159 165 26 chr3 31694401 31694747 -195829831 + MSTA LTR MaLR 1 394 -34 2429 87 0 0 chr3 31694748 31695046 -195829532 - AluSx SINE Alu -14 298 1 566 28 14 0 chr3 31695076 31695148 -195829430 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 1993 157 0 10 chr3 31695159 31695465 -195829113 - AluJb SINE Alu -9 303 1 1965 141 10 0 chr3 31695473 31695778 -195828800 - AluSx SINE Alu -4 308 1 249 128 0 0 chr3 31695778 31695817 -195828761 + MSTA LTR MaLR 388 426 -2 557 223 70 38 chr3 31696049 31696206 -195828372 - MER63A DNA MER1_type 0 210 49 * 735 236 155 42 chr3 31696200 31696535 -195828043 - MER115 DNA AcHobo -265 428 56 764 204 80 6 chr3 31696968 31697144 -195827434 + MER5A DNA MER1_type 1 189 0 2311 115 0 3 chr3 31697165 31697477 -195827101 + AluSx SINE Alu 1 311 -1 2108 85 16 72 chr3 31697479 31697797 -195826781 + AluSq SINE Alu 1 300 -13 1621 142 131 71 chr3 31697812 31698178 -195826400 - MLT1B LTR MaLR -2 388 1 2089 158 24 0 chr3 31699562 31699898 -195824680 - MER7A DNA MER2_type -4 342 1 1492 133 29 82 chr3 31700272 31700551 -195824027 + AluJo SINE Alu 34 297 -15 198 209 0 0 chr3 31700575 31700618 -195823960 - L3 LINE CR1 -6 1571 1529 419 310 103 16 chr3 31700672 31700914 -195823664 - LTR16C LTR ERVL -43 448 186 2168 198 24 53 chr3 31700977 31701487 -195823091 - LTR42 LTR ERVL 0 495 1 1304 251 104 47 chr3 31701679 31702186 -195822392 + MLT1H1 LTR MaLR 20 555 0 390 198 90 18 chr3 31704182 31704293 -195820285 - L1MC5 LINE L1 -573 7388 7270 1060 246 176 37 chr3 31704311 31704742 -195819836 - MLT1H LTR MaLR -58 491 1 2022 124 7 10 chr3 31704841 31705147 -195819431 + AluSx SINE Alu 1 305 -7 248 0 0 30 chr3 31705157 31705190 -195819388 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 189 305 61 0 chr3 31705325 31705407 -195819171 + MIR SINE MIR 174 260 -2 2163 135 0 0 chr3 31705473 31705785 -195818793 - AluSx SINE Alu 0 312 1 2640 40 0 3 chr3 31706000 31706301 -195818277 - AluY SINE Alu -11 300 1 826 245 22 0 chr3 31707568 31707752 -195816826 - MER5A DNA MER1_type -1 188 1 443 299 65 33 chr3 31707890 31708104 -195816474 - MIR SINE MIR -11 251 31 242 248 153 29 chr3 31708201 31708338 -195816240 + MIR SINE MIR 95 248 -14 945 286 48 60 chr3 31708720 31709322 -195815256 - L1MEc LINE L1 -5484 912 318 1383 225 43 33 chr3 31709322 31709651 -195814927 - MLT2B3 LTR ERVL 0 554 223 207 0 0 0 chr3 31709658 31709681 -195814897 + (CA)n Simple_repeat Simple_repeat 2 24 0 1071 156 58 44 chr3 31709732 31709746 -195814832 - MLT2B2 LTR ERVL -285 230 218 261 0 0 0 chr3 31709746 31709775 -195814803 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr3 31709774 31709797 -195814781 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 1071 156 58 44 chr3 31709775 31710007 -195814571 - MLT2B2 LTR ERVL -297 218 3 647 290 63 20 chr3 31710009 31710261 -195814317 - L1MEc LINE L1 -6074 322 60 368 360 146 15 chr3 31710291 31710552 -195814026 + L2 LINE L2 2978 3272 0 2513 106 13 8 chr3 31710756 31711133 -195813445 - L1PA16 LINE L1 -13 6153 5775 25 0 0 0 chr3 31711356 31711381 -195813197 + GC_rich Low_complexity Low_complexity 1 25 0 414 148 219 118 chr3 31711575 31711679 -195812899 + MER53 DNA DNA 1 93 -96 2359 82 10 0 chr3 31711679 31711970 -195812608 - AluSp SINE Alu -19 294 1 414 148 219 118 chr3 31711970 31712034 -195812544 + MER53 DNA DNA 93 186 -3 453 281 228 34 chr3 31712057 31712377 -195812201 + MLT1J2 LTR MaLR 59 440 -10 653 317 78 58 chr3 31712415 31712643 -195811935 + L2 LINE L2 2271 2493 -779 2209 125 0 22 chr3 31712643 31712962 -195811616 - AluSx SINE Alu 0 312 1 653 317 78 58 chr3 31712962 31713282 -195811296 + L2 LINE L2 2493 2857 -415 2026 134 0 22 chr3 31713282 31713596 -195810982 - AluSq SINE Alu -6 307 1 653 317 78 58 chr3 31713596 31713827 -195810751 + L2 LINE L2 2857 3082 -190 270 204 0 0 chr3 31713969 31714018 -195810560 - MLT1G LTR MaLR -1 589 541 1837 155 0 7 chr3 31715372 31715662 -195808916 + AluJb SINE Alu 2 289 -23 451 149 40 0 chr3 31715689 31715763 -195808815 + MER81 DNA DNA 36 112 -2 518 145 24 0 chr3 31716080 31716163 -195808415 + AluJb SINE Alu 3 87 -225 1447 132 48 0 chr3 31716352 31716579 -195807999 + AluJb SINE Alu 63 300 -12 1672 128 4 0 chr3 31716913 31717140 -195807438 - AluSx SINE Alu -79 233 6 446 299 21 43 chr3 31717144 31717469 -195807109 - L1M4 LINE L1 -1452 4694 4377 1577 163 83 0 chr3 31717491 31717768 -195806810 + AluJb SINE Alu 5 304 -8 2240 131 0 0 chr3 31717819 31718125 -195806453 - AluJb SINE Alu -6 306 1 333 220 51 51 chr3 31718553 31718671 -195805907 + L1M2 LINE L1 5593 5710 -602 2271 104 0 10 chr3 31718995 31719294 -195805284 - AluSx SINE Alu -16 296 1 2124 111 20 7 chr3 31719294 31719592 -195804986 - AluSx SINE Alu -9 303 2 373 245 53 49 chr3 31719598 31719736 -195804842 - L1M3 LINE L1 -737 5434 5283 2287 107 0 0 chr3 31719736 31720036 -195804542 - AluSx SINE Alu -12 300 1 373 245 53 49 chr3 31720036 31720133 -195804445 - L1M3 LINE L1 -888 5283 5188 2823 132 53 12 chr3 31720380 31720866 -195803712 - L1MA8 LINE L1 0 6291 5786 27 0 0 0 chr3 31721012 31721039 -195803539 + AT_rich Low_complexity Low_complexity 1 27 0 690 263 103 62 chr3 31721040 31721090 -195803488 - HAL1 LINE L1 -28 2479 2432 1711 140 19 53 chr3 31721090 31721412 -195803166 + AluJo SINE Alu 1 311 -1 690 263 103 62 chr3 31721412 31721763 -195802815 - HAL1 LINE L1 -75 2432 2042 2403 95 0 3 chr3 31721763 31722068 -195802510 - AluSx SINE Alu -8 304 1 690 263 103 62 chr3 31722068 31722278 -195802300 - HAL1 LINE L1 -465 2042 1842 1203 70 0 19 chr3 31722282 31722438 -195802140 - AluSg1 SINE Alu -156 153 1 250 214 43 29 chr3 31722447 31722517 -195802061 - HAL1 LINE L1 -698 1809 1739 1293 275 43 88 chr3 31722537 31723011 -195801567 - HAL1 LINE L1 -1048 1459 965 1736 98 0 5 chr3 31723011 31723235 -195801343 - AluSg/x SINE Alu -18 294 72 1293 275 43 88 chr3 31723235 31723377 -195801201 - HAL1 LINE L1 -1542 965 818 2273 116 0 0 chr3 31723377 31723678 -195800900 - AluSq SINE Alu -12 301 1 2010 136 7 3 chr3 31723680 31723975 -195800603 - AluSx SINE Alu -16 296 1 1293 275 43 88 chr3 31723975 31724443 -195800135 - HAL1 LINE L1 -1690 817 420 1038 292 113 3 chr3 31724508 31724899 -195799679 + LTR16A LTR ERVL 2 435 -15 420 232 161 0 chr3 31724949 31725061 -195799517 - LTR16A LTR ERVL -316 134 5 184 283 0 0 chr3 31725223 31725269 -195799309 + MIR SINE MIR 85 130 -78 832 194 94 0 chr3 31725275 31725435 -195799143 - FAM SINE Alu 0 175 1 281 309 56 8 chr3 31725435 31725561 -195799017 + MIR SINE MIR 112 243 -19 200 345 0 0 chr3 31725668 31725723 -195798855 + L3 LINE CR1 578 632 -945 26 64 0 0 chr3 31725723 31725770 -195798808 + AT_rich Low_complexity Low_complexity 1 47 0 282 95 0 0 chr3 31726130 31726172 -195798406 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2835 153 10 85 chr3 31726244 31726834 -195797744 - MER52A LTR ERV1 0 1755 1210 3143 178 193 63 chr3 31726937 31728059 -195796519 - MER52A LTR ERV1 -406 1349 1 602 275 96 23 chr3 31728116 31728422 -195796156 - L1ME LINE L1 -526 5636 5299 2219 105 3 0 chr3 31728422 31728716 -195795862 - AluSg SINE Alu -15 295 1 602 275 96 23 chr3 31728716 31728762 -195795816 - L1ME LINE L1 -863 5299 5258 737 169 23 8 chr3 31728899 31729029 -195795549 - FLAM_C SINE Alu -1 132 1 428 224 64 8 chr3 31729477 31729602 -195794976 - L1ME LINE L1 -1454 4692 4561 329 340 67 10 chr3 31729639 31729833 -195794745 - L1ME LINE L1 -1674 4472 4268 23 0 0 0 chr3 31730536 31730559 -195794019 + AT_rich Low_complexity Low_complexity 1 23 0 345 326 62 0 chr3 31730645 31730789 -195793789 - L2 LINE L2 -5 3267 3115 364 229 62 26 chr3 31730870 31730986 -195793592 + MLT1E LTR MaLR 20 143 -412 1956 170 0 0 chr3 31731146 31731458 -195793120 - AluJb SINE Alu 0 312 1 2278 101 7 3 chr3 31731493 31731799 -195792779 - AluSg1 SINE Alu -2 307 1 218 269 0 0 chr3 31732488 31732540 -195792038 - L3 LINE CR1 -781 796 745 * 417 306 15 58 chr3 31732530 31732736 -195791842 + L3 LINE CR1 799 995 -582 388 289 153 52 chr3 31732743 31733169 -195791409 - L1 LINE L1 -747 5399 4931 938 124 8 0 chr3 31733223 31733352 -195791226 - FLAM_C SINE Alu -3 130 1 487 212 8 61 chr3 31733656 31733788 -195790790 + L2 LINE L2 3185 3309 -4 237 383 87 7 chr3 31733816 31733965 -195790613 + L2 LINE L2 2917 3077 -195 198 0 0 0 chr3 31733999 31734021 -195790557 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 3739 67 5 0 chr3 31734021 31734467 -195790111 - L1PA7 LINE L1 -10 6144 5697 261 200 62 15 chr3 31734839 31734904 -195789674 - L1MA10 LINE L1 0 6334 6267 923 149 0 8 chr3 31735064 31735198 -195789380 + FLAM_C SINE Alu 1 133 0 458 284 0 45 chr3 31735949 31736104 -195788474 + MIR SINE MIR 2 149 -113 526 279 82 19 chr3 31736351 31736559 -195788019 + LTR33 LTR ERVL 301 521 0 727 286 36 14 chr3 31737854 31738074 -195786504 + MIR SINE MIR 26 250 -12 3102 147 8 77 chr3 31738487 31739126 -195785452 - L1 LINE L1 -1141 5005 4411 2413 125 35 13 chr3 31739126 31739503 -195785075 - Tigger2 DNA MER2_type 0 2718 2334 5087 183 32 7 chr3 31739649 31740703 -195783875 - L1 LINE L1 -2502 3644 2564 350 144 0 0 chr3 31740744 31740812 -195783766 - L1MC4 LINE L1 -261 7628 7480 300 222 49 0 chr3 31740903 31740984 -195783594 + L1ME3A LINE L1 5793 5877 -293 200 190 35 52 chr3 31741533 31741591 -195782987 - L2 LINE L2 -32 3281 3225 531 235 207 35 chr3 31741600 31741919 -195782659 - L1M4 LINE L1 -978 5168 4795 969 287 42 44 chr3 31742034 31742275 -195782303 - L1MEc LINE L1 -2200 3929 3689 2143 129 23 0 chr3 31742275 31742577 -195782001 - AluJb SINE Alu -3 309 1 969 287 42 44 chr3 31742577 31742903 -195781675 - L1MEc LINE L1 -2440 3689 3363 529 276 57 70 chr3 31742902 31743080 -195781498 - L1MEc LINE L1 -3311 2818 2639 * 1812 135 0 96 chr3 31743080 31743286 -195781292 - AluJo SINE Alu -10 302 139 1953 143 3 10 chr3 31743286 31743617 -195780961 + AluSq SINE Alu 1 313 0 1812 135 0 96 chr3 31743617 31743744 -195780834 - AluJo SINE Alu -173 139 1 529 276 57 70 chr3 31743744 31744010 -195780568 - L1MEc LINE L1 -3490 2639 2380 2206 107 140 48 chr3 31744010 31744077 -195780501 - MSTA LTR MaLR 0 428 369 1824 146 59 3 chr3 31744077 31744364 -195780214 + AluSx SINE Alu 1 303 -9 2206 107 140 48 chr3 31744364 31744688 -195779890 - MSTA LTR MaLR -59 369 1 529 276 57 70 chr3 31744688 31744772 -195779806 - L1MEc LINE L1 -3749 2380 2296 702 266 47 21 chr3 31744772 31745005 -195779573 + LTR33 LTR ERVL 1 239 -282 312 241 37 0 chr3 31745221 31745329 -195779249 - L1MEc LINE L1 -3858 2271 2160 192 40 0 0 chr3 31745364 31745389 -195779189 + (TA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 31745417 31745440 -195779138 + AT_rich Low_complexity Low_complexity 1 23 0 546 135 54 9 chr3 31745552 31745663 -195778915 - LTR9B LTR ERV1 -84 560 445 427 321 103 31 chr3 31745893 31746072 -195778506 - L1MEc LINE L1 -4573 1737 1572 1746 171 3 22 chr3 31746072 31746387 -195778191 - AluSx SINE Alu -3 309 1 427 321 103 31 chr3 31746387 31746596 -195777982 - L1MEc LINE L1 -4738 1572 1321 2230 120 3 0 chr3 31746607 31746915 -195777663 - AluSp SINE Alu -4 309 1 450 309 23 28 chr3 31746950 31747167 -195777411 - L1MEc LINE L1 -4893 1226 1011 683 279 46 67 chr3 31747203 31747594 -195776984 - L1MEc LINE L1 -5269 850 468 199 386 8 38 chr3 31748022 31748154 -195776424 + L2 LINE L2 2840 2967 -305 456 176 0 0 chr3 31748443 31748517 -195776061 - MER96 DNA MER1_type? -8 167 94 433 219 125 0 chr3 31748630 31748726 -195775852 + L2 LINE L2 3206 3313 0 362 372 7 7 chr3 31749012 31749157 -195775421 - MER5B DNA MER1_type -30 148 4 886 271 118 36 chr3 31750280 31750779 -195773799 - MLT1H1 LTR MaLR 0 555 16 598 270 58 5 chr3 31750826 31751015 -195773563 - MIR SINE MIR -59 203 5 317 219 41 0 chr3 31751597 31751670 -195772908 - L2 LINE L2 -55 3217 3142 355 282 86 55 chr3 31751722 31751977 -195772601 + MLT1J LTR MaLR 2 264 -247 1032 154 21 27 chr3 31752322 31752510 -195772068 - MER53 DNA DNA 0 189 3 194 194 0 0 chr3 31752560 31752596 -195771982 + L2 LINE L2 3262 3297 -16 770 188 65 24 chr3 31753036 31753206 -195771372 - FRAM SINE Alu -6 170 1 235 347 107 20 chr3 31755197 31755347 -195769231 + L2 LINE L2 2455 2617 -697 205 288 17 0 chr3 31755368 31755427 -195769151 + MIR SINE MIR 14 73 -189 351 0 0 0 chr3 31755427 31755466 -195769112 + (TG)n Simple_repeat Simple_repeat 1 39 0 2161 113 3 0 chr3 31755485 31755767 -195768811 - AluSp SINE Alu -30 283 1 434 279 71 7 chr3 31755771 31755911 -195768667 + MIR SINE MIR 70 218 -44 624 254 108 75 chr3 31756081 31756443 -195768135 + MLT1H LTR MaLR 110 490 -59 2265 12 0 4 chr3 31756443 31756692 -195767886 - AluY SINE Alu -4 307 60 624 254 108 75 chr3 31756692 31756755 -195767823 + MLT1H LTR MaLR 490 549 0 441 268 57 0 chr3 31756809 31756932 -195767646 - MER94 DNA DNA -3 131 2 203 346 48 39 chr3 31757414 31757518 -195767060 + L2 LINE L2 3160 3264 -8 557 267 86 14 chr3 31757582 31757792 -195766786 - LTR16A LTR ERVL -10 440 216 1145 147 99 4 chr3 31758027 31758259 -195766319 + L1PB1 LINE L1 5894 6147 -4 23 0 0 0 chr3 31758259 31758282 -195766296 + AT_rich Low_complexity Low_complexity 1 23 0 408 281 7 33 chr3 31758299 31758452 -195766126 - L2 LINE L2 -144 3169 3021 2103 113 0 7 chr3 31758457 31758750 -195765828 + AluJb SINE Alu 5 295 -17 525 173 0 0 chr3 31758775 31758856 -195765722 + AluJ/FLAM SINE Alu 2 82 -230 1331 234 50 50 chr3 31758869 31759297 -195765281 - L2 LINE L2 -302 3011 2586 2456 43 3 0 chr3 31759297 31759579 -195764999 + L1PA5 LINE L1 5869 6151 -3 991 138 132 0 chr3 31759580 31759747 -195764831 + L1MC1 LINE L1 5857 6045 -288 5644 178 5 24 chr3 31759866 31761248 -195763330 - L1P5 LINE L1 -680 5471 4120 180 111 0 0 chr3 31761912 31761939 -195762639 + (CA)n Simple_repeat Simple_repeat 2 28 0 323 350 14 14 chr3 31762751 31762891 -195761687 + L2 LINE L2 2721 2860 -454 2017 144 0 3 chr3 31762891 31763189 -195761389 - AluJb SINE Alu -6 306 10 259 146 0 0 chr3 31763283 31763324 -195761254 - L2 LINE L2 -5 3308 3268 558 259 105 41 chr3 31763449 31763715 -195760863 + MLT1G1 LTR MaLR 8 290 -305 201 74 0 0 chr3 31764987 31765014 -195759564 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 47 53 0 0 chr3 31766777 31766852 -195757726 + GC_rich Low_complexity Low_complexity 1 75 0 832 146 0 23 chr3 31767066 31767196 -195757382 - AluJo SINE Alu -151 161 35 41 58 0 0 chr3 31767330 31767399 -195757179 + AT_rich Low_complexity Low_complexity 1 69 0 1544 169 169 12 chr3 31767408 31767740 -195756838 - MLT2C1 LTR ERVL 0 397 14 26 0 0 0 chr3 31767837 31767863 -195756715 + AT_rich Low_complexity Low_complexity 1 26 0 5293 85 17 1 chr3 31768658 31769349 -195755229 + L1PA8 LINE L1 5471 6172 0 1107 161 0 6 chr3 31769815 31769995 -195754583 + AluJb SINE Alu 120 298 -14 21 36 0 0 chr3 31770363 31770391 -195754187 + AT_rich Low_complexity Low_complexity 1 28 0 1205 62 0 0 chr3 31770948 31771094 -195753484 - L1PA8 LINE L1 -8 6164 6019 198 375 38 51 chr3 31771339 31771574 -195753004 + L2 LINE L2 2627 2858 -456 604 262 24 6 chr3 31771647 31771815 -195752763 - MIR SINE MIR -24 238 68 1669 205 30 0 chr3 31773546 31773883 -195750695 + L1MB7 LINE L1 5825 6171 -13 195 250 0 0 chr3 31774556 31774596 -195749982 - L2 LINE L2 -236 3036 2997 249 324 44 29 chr3 31775571 31775707 -195748871 + MIR SINE MIR 79 216 -46 21 0 0 0 chr3 31775741 31775762 -195748816 + AT_rich Low_complexity Low_complexity 1 21 0 857 180 101 39 chr3 31776072 31776250 -195748328 - MER5A DNA MER1_type 0 189 1 295 277 125 60 chr3 31776261 31776900 -195747678 - L1 LINE L1 -2505 3641 2961 362 304 52 25 chr3 31777284 31777610 -195746968 + L1ME3A LINE L1 3623 3957 -2189 264 219 10 182 chr3 31777829 31778021 -195746557 - MLT1H LTR MaLR -129 420 262 311 349 50 42 chr3 31778239 31778500 -195746078 + L1ME3A LINE L1 4077 4339 -1807 961 300 36 70 chr3 31778502 31778919 -195745659 - L2 LINE L2 -3 3310 2908 1779 208 152 9 chr3 31779292 31779734 -195744844 - MLT1D LTR MaLR 0 505 1 292 225 29 104 chr3 31779979 31780114 -195744464 + L1ME3A LINE L1 5316 5437 -2371 1427 216 154 38 chr3 31780114 31780563 -195744015 - MLT1D LTR MaLR -4 501 1 292 225 29 104 chr3 31780563 31780600 -195743978 + L1ME3A LINE L1 5437 5475 -2333 277 274 98 65 chr3 31780681 31781017 -195743561 + L1ME3A LINE L1 5462 5808 -313 214 306 24 57 chr3 31781144 31781268 -195743310 + MIR3 SINE MIR 37 156 -52 286 313 98 0 chr3 31781499 31781604 -195742974 + MARNA DNA Mariner 425 543 -43 213 65 0 0 chr3 31781604 31781635 -195742943 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2640 45 0 3 chr3 31782127 31782439 -195742139 - AluY SINE Alu 0 311 1 295 309 31 10 chr3 31782686 31782783 -195741795 + MIR SINE MIR 88 186 -76 487 242 113 26 chr3 31783040 31783234 -195741344 + L1ME3A LINE L1 5959 6169 -1 324 323 46 15 chr3 31783349 31783479 -195741099 - MER5A DNA MER1_type -4 185 52 659 187 26 26 chr3 31783529 31783684 -195740894 - MER5B DNA MER1_type -18 160 6 339 288 82 34 chr3 31785383 31785402 -195739176 - MIR3 SINE MIR -32 176 159 712 162 246 0 chr3 31785402 31785569 -195739009 - MER3 DNA MER1_type 0 209 2 339 288 82 34 chr3 31785569 31785695 -195738883 - MIR3 SINE MIR -49 159 24 528 256 109 56 chr3 31786643 31786964 -195737614 - MLT1L LTR MaLR -82 533 196 984 232 152 45 chr3 31786988 31787480 -195737098 - MLT1H LTR MaLR -4 545 1 22 35 0 0 chr3 31788442 31788471 -195736107 + AT_rich Low_complexity Low_complexity 1 29 0 402 274 91 32 chr3 31788716 31788902 -195735676 - L2 LINE L2 -5 3267 3071 651 245 175 37 chr3 31789345 31789479 -195735099 - L1MC/D LINE L1 -1985 5823 5709 186 103 0 0 chr3 31789479 31789508 -195735070 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 651 245 175 37 chr3 31789508 31789642 -195734936 - L1MC/D LINE L1 -2099 5709 5518 1931 163 46 0 chr3 31789668 31789993 -195734585 - MER2 DNA MER2_type -1 343 4 203 286 0 0 chr3 31791871 31791920 -195732658 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 356 169 14 0 chr3 31791980 31792051 -195732527 - MER116 DNA Mariner -8 72 1 839 232 40 16 chr3 31792453 31792703 -195731875 + MER112 DNA MER1_type 1 256 0 1514 192 10 70 chr3 31795167 31795553 -195729025 - MLT1A2 LTR MaLR -11 363 1 35643 33 25 1 chr3 31795812 31801216 -195723362 - L1PA3 LINE L1 0 6155 617 732 43 0 0 chr3 31801216 31801308 -195723270 - L1PA3 LINE L1 -6054 92 1 634 194 35 14 chr3 31801364 31801508 -195723070 - Charlie4 DNA MER1_type 0 1961 1815 1054 286 99 50 chr3 31802863 31803420 -195721158 - MLT1K LTR MaLR -4 584 1 2326 94 0 13 chr3 31804499 31804807 -195719771 + AluSg SINE Alu 6 309 -1 1418 195 30 30 chr3 31805873 31806171 -195718407 + AluJo SINE Alu 2 299 -13 390 292 76 32 chr3 31806437 31806622 -195717956 - MIR SINE MIR -21 241 49 765 294 134 34 chr3 31809172 31809529 -195715049 + L3 LINE CR1 1165 1557 -20 21 0 0 0 chr3 31810870 31810891 -195713687 + AT_rich Low_complexity Low_complexity 1 21 0 2474 60 9 0 chr3 31810932 31811264 -195713314 - L1P3 LINE L1 -426 5728 5394 2124 69 76 0 chr3 31811264 31811550 -195713028 + L1PA7 LINE L1 5842 6152 -2 1037 189 17 0 chr3 31812613 31812793 -195711785 - MER5A DNA MER1_type -6 183 1 25 0 0 0 chr3 31813129 31813154 -195711424 + AT_rich Low_complexity Low_complexity 1 25 0 1093 289 74 21 chr3 31813165 31813759 -195710819 + L2 LINE L2 2690 3312 -1 306 320 88 20 chr3 31815135 31815282 -195709296 + MIR SINE MIR 8 164 -98 1591 198 63 27 chr3 31815284 31815694 -195708884 + LTR40c LTR ERVL 1 425 -40 2333 101 0 0 chr3 31815937 31816234 -195708344 + AluSx SINE Alu 1 297 -15 1830 175 52 70 chr3 31816730 31817244 -195707334 - MLT1D LTR MaLR 0 505 1 1913 175 91 0 chr3 31817695 31818078 -195706500 - MSTB LTR MaLR 0 426 9 399 257 50 29 chr3 31818202 31818342 -195706236 - L2 LINE L2 0 3313 3171 413 250 0 60 chr3 31818427 31818527 -195706051 - MER5A DNA MER1_type -87 102 9 420 314 17 29 chr3 31818543 31818718 -195705860 - MER5B DNA MER1_type 0 178 6 766 229 27 33 chr3 31818762 31818945 -195705633 + MER5A DNA MER1_type 6 187 -2 371 318 110 17 chr3 31818955 31819128 -195705450 - MER5B DNA MER1_type 0 189 1 888 144 0 4 chr3 31820381 31820601 -195703977 + AluJb SINE Alu 5 300 -12 438 249 112 66 chr3 31820774 31820898 -195703680 + MIR SINE MIR 43 181 -81 2097 108 17 0 chr3 31820898 31821185 -195703393 + AluSx SINE Alu 1 292 -20 438 249 112 66 chr3 31821185 31821257 -195703321 + MIR SINE MIR 181 248 -14 1018 120 0 0 chr3 31821341 31821483 -195703095 + FRAM SINE Alu 23 164 -12 196 98 24 24 chr3 31821483 31821524 -195703054 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 885 248 16 50 chr3 31821714 31821972 -195702606 - MIR SINE MIR 0 262 14 21 36 0 0 chr3 31822010 31822038 -195702540 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 31822202 31822232 -195702346 + AT_rich Low_complexity Low_complexity 1 30 0 1598 212 18 18 chr3 31822243 31822629 -195701949 + L1ME1 LINE L1 5695 6080 -86 1158 149 6 0 chr3 31822629 31822797 -195701781 - AluSg/x SINE Alu -10 302 134 2385 93 0 0 chr3 31822797 31823099 -195701479 - AluSg SINE Alu -8 302 1 29993 53 5 1 chr3 31824184 31829047 -195695531 + L1PA3 LINE L1 1266 6147 -8 5323 51 4 23 chr3 31829071 31829762 -195694816 + L1PA5 LINE L1 5475 6152 -2 284 48 24 0 chr3 31829781 31829823 -195694755 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1156 148 33 86 chr3 31829824 31830255 -195694323 + Charlie1 DNA MER1_type 132 2761 0 897 65 0 0 chr3 31830336 31830459 -195694119 + L1PA4 LINE L1 6029 6151 -4 243 0 0 0 chr3 31832084 31832111 -195692467 + (T)n Simple_repeat Simple_repeat 1 27 0 217 182 23 0 chr3 31832967 31833011 -195691567 + (CA)n Simple_repeat Simple_repeat 1 45 0 226 304 252 7 chr3 31834262 31834397 -195690181 - MIR3 SINE MIR -11 197 30 838 233 93 43 chr3 31838240 31838562 -195686016 + MER113 DNA MER1_type? 136 473 -48 261 333 78 0 chr3 31838611 31838701 -195685877 - MIR3 SINE MIR -48 160 64 1244 223 49 21 chr3 31838737 31839065 -195685513 - MLT1E LTR MaLR -256 337 1 253 203 94 0 chr3 31839067 31839131 -195685447 + L1MC5 LINE L1 7859 7928 -33 1659 143 56 28 chr3 31839218 31839505 -195685073 + AluJb SINE Alu 1 295 -17 247 327 140 20 chr3 31839590 31839740 -195684838 - L2 LINE L2 -3 3269 3102 401 259 149 45 chr3 31839833 31840122 -195684456 + MLT1H1 LTR MaLR 1 319 -236 226 132 0 0 chr3 31840123 31840161 -195684417 + MLT1H1 LTR MaLR 489 526 -4 * 325 185 0 0 chr3 31840129 31840183 -195684395 + MLT1G1 LTR MaLR 541 594 -1 358 293 66 9 chr3 31841394 31841500 -195683078 - MIR3 SINE MIR -85 123 12 399 233 19 19 chr3 31841759 31841862 -195682716 - MIR SINE MIR -56 206 104 234 0 0 0 chr3 31841971 31841997 -195682581 + (T)n Simple_repeat Simple_repeat 1 26 0 406 148 333 9 chr3 31842351 31842459 -195682119 - MER5A DNA MER1_type -45 144 2 644 314 89 3 chr3 31843737 31844074 -195680504 + L1ME3A LINE L1 5477 5842 -279 522 197 179 0 chr3 31844118 31844235 -195680343 + L1ME3A LINE L1 6033 6170 0 242 208 0 0 chr3 31844293 31844341 -195680237 + L1MC4 LINE L1 6658 6705 -1337 2353 163 14 3 chr3 31844633 31844994 -195679584 + MLT1A1 LTR MaLR 1 365 0 579 270 6 31 chr3 31845528 31845691 -195678887 - MIR SINE MIR -16 246 88 226 325 74 49 chr3 31845990 31846153 -195678425 + MIR SINE MIR 84 250 -12 258 32 0 0 chr3 31846802 31846833 -195677745 + (GA)n Simple_repeat Simple_repeat 2 32 0 250 209 374 0 chr3 31847256 31847371 -195677207 + MER5A DNA MER1_type 9 166 -23 865 162 132 6 chr3 31848076 31848243 -195676335 - MER5A DNA MER1_type -1 188 1 334 120 27 0 chr3 31848931 31849006 -195675572 + (TA)n Simple_repeat Simple_repeat 2 78 0 24 0 0 0 chr3 31849014 31849038 -195675540 + AT_rich Low_complexity Low_complexity 1 24 0 555 277 242 18 chr3 31850380 31851081 -195673497 - L2 LINE L2 -13 3300 2454 297 290 89 32 chr3 31851624 31851748 -195672830 - MIR SINE MIR -130 132 2 1824 181 0 6 chr3 31852482 31852796 -195671782 - AluJo SINE Alu 0 312 1 598 242 140 69 chr3 31853386 31853963 -195670615 - MLT1H1 LTR MaLR 0 590 1 392 244 224 49 chr3 31854492 31854738 -195669840 + L2 LINE L2 3024 3312 -1 682 290 108 0 chr3 31855202 31855416 -195669162 + MIR SINE MIR 4 240 -22 348 257 83 35 chr3 31855814 31855958 -195668620 + MIR SINE MIR 16 166 -96 319 232 95 21 chr3 31856463 31856558 -195668020 + MIR SINE MIR 95 196 -66 606 251 72 39 chr3 31857445 31857652 -195666926 + MIR SINE MIR 14 227 -35 807 194 34 23 chr3 31857787 31857962 -195666616 - MIR3 SINE MIR -2 206 30 534 259 161 5 chr3 31858252 31858445 -195666133 - MIR SINE MIR -21 241 19 183 204 0 0 chr3 31858905 31858949 -195665629 + T-rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 31860389 31860425 -195664153 + AT_rich Low_complexity Low_complexity 1 36 0 418 322 23 12 chr3 31860820 31860991 -195663587 - MIR SINE MIR -19 243 71 2171 117 0 0 chr3 31861246 31861536 -195663042 - AluSx SINE Alu -22 290 1 924 135 0 0 chr3 31861536 31861669 -195662909 - AluSq/x SINE Alu -177 135 3 2064 104 0 4 chr3 31865801 31866069 -195658509 + AluSq SINE Alu 13 279 -34 363 44 0 0 chr3 31866073 31866118 -195658460 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 342 307 137 0 chr3 31866298 31866451 -195658127 - MIR3 SINE MIR -5 203 30 357 320 58 0 chr3 31867441 31867544 -195657034 - L2 LINE L2 -8 3264 3156 783 136 55 1 chr3 31867586 31867739 -195656839 + L1M4 LINE L1 5352 5512 -672 1742 163 3 20 chr3 31870636 31870942 -195653636 - AluJo SINE Alu -11 301 1 800 285 131 33 chr3 31871186 31871532 -195653046 + Charlie8 DNA MER1_type 45 447 -1970 2021 113 0 42 chr3 31871532 31871841 -195652737 - AluSq SINE Alu -17 296 1 800 285 131 33 chr3 31871841 31871946 -195652632 + Charlie8 DNA MER1_type 447 540 -1877 291 54 0 0 chr3 31871947 31871984 -195652594 + (TC)n Simple_repeat Simple_repeat 1 37 0 1324 133 48 9 chr3 31872757 31872839 -195651739 + MER20 DNA MER1_type 1 78 -141 387 0 0 0 chr3 31872839 31872882 -195651696 + (TG)n Simple_repeat Simple_repeat 2 44 0 1324 133 48 9 chr3 31872882 31873009 -195651569 + MER20 DNA MER1_type 78 218 -1 284 210 12 0 chr3 31874542 31874623 -195649955 + GA-rich Low_complexity Low_complexity 1 82 0 336 24 0 0 chr3 31874729 31874770 -195649808 + (CA)n Simple_repeat Simple_repeat 2 42 0 222 91 0 0 chr3 31874929 31874962 -195649616 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 201 343 30 30 chr3 31880031 31880130 -195644448 - L2 LINE L2 -3 3269 3171 180 0 0 0 chr3 31881601 31881621 -195642957 + (TA)n Simple_repeat Simple_repeat 2 21 0 329 330 8 25 chr3 31881623 31881741 -195642837 - MER5B DNA MER1_type -61 117 2 1060 284 56 62 chr3 31882192 31882657 -195641921 + MLT1J LTR MaLR 6 467 -44 396 218 79 0 chr3 31882657 31882758 -195641820 + MIR SINE MIR 131 239 -23 186 53 105 0 chr3 31882765 31882822 -195641756 + (TA)n Simple_repeat Simple_repeat 2 64 0 1564 294 134 24 chr3 31882824 31882871 -195641707 + L2 LINE L2 2128 2168 -1104 1109 206 53 0 chr3 31882871 31883080 -195641498 + MER58A DNA MER1_type 5 224 0 1564 294 134 24 chr3 31883080 31883866 -195640712 + L2 LINE L2 2168 3053 -219 295 277 142 27 chr3 31884709 31884857 -195639721 - MIR3 SINE MIR -3 205 41 254 209 45 30 chr3 31885252 31885319 -195639259 - MER103 DNA DNA -3 163 96 946 145 111 12 chr3 31886294 31886466 -195638112 + MER5A DNA MER1_type 1 189 0 220 302 16 0 chr3 31887194 31887257 -195637321 - MIR SINE MIR -32 230 167 25 97 0 0 chr3 31887282 31887313 -195637265 + AT_rich Low_complexity Low_complexity 1 31 0 626 210 9 101 chr3 31888061 31888117 -195636461 + L1MC4 LINE L1 7449 7509 -533 817 212 20 7 chr3 31888117 31888268 -195636310 + FRAM SINE Alu 1 153 -13 626 210 9 101 chr3 31888268 31888430 -195636148 + L1MC4 LINE L1 7509 7647 -395 * 964 155 20 50 chr3 31888399 31888599 -195635979 + L1MA7 LINE L1 5851 6044 -247 706 165 76 0 chr3 31888602 31888760 -195635818 + L1MA9 LINE L1 6137 6306 -6 244 255 20 61 chr3 31888778 31888876 -195635702 + L1MC4a LINE L1 7532 7625 -183 1250 187 53 62 chr3 31888991 31889328 -195635250 + L1MC4 LINE L1 7708 8041 -1 204 309 0 0 chr3 31891103 31891158 -195633420 - MIR SINE MIR -149 113 59 2428 53 0 0 chr3 31891677 31891994 -195632584 + AluY SINE Alu 1 317 0 534 267 184 9 chr3 31892369 31892586 -195631992 - MIR SINE MIR 0 262 8 186 316 0 0 chr3 31893030 31893087 -195631491 - MIR SINE MIR -15 247 191 2312 92 0 19 chr3 31893093 31893410 -195631168 - AluSx SINE Alu -1 311 1 26 0 0 0 chr3 31893417 31893443 -195631135 + AT_rich Low_complexity Low_complexity 1 26 0 228 330 55 0 chr3 31893459 31893550 -195631028 - MIR SINE MIR -74 188 93 404 271 53 26 chr3 31893926 31894097 -195630481 - L1MC/D LINE L1 -332 5789 5621 770 244 123 36 chr3 31894897 31895229 -195629349 + L1ME4a LINE L1 5758 6118 -3 494 203 87 14 chr3 31895911 31896049 -195628529 - MER5A DNA MER1_type -41 148 1 2371 103 3 0 chr3 31896400 31896702 -195627876 + AluSx SINE Alu 1 303 -9 518 246 16 0 chr3 31896975 31897097 -195627481 - MER5C DNA MER1_type -200 124 1 193 333 17 0 chr3 31897300 31897360 -195627218 + L2 LINE L2 3253 3313 0 22 0 0 0 chr3 31897768 31897790 -195626788 + AT_rich Low_complexity Low_complexity 1 22 0 258 262 79 35 chr3 31897987 31898174 -195626404 - MIR SINE MIR 0 262 7 205 182 0 0 chr3 31898477 31898510 -195626068 + (CA)n Simple_repeat Simple_repeat 1 33 0 234 0 0 0 chr3 31898591 31898617 -195625961 + (TA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr3 31900790 31900822 -195623756 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 31901084 31901112 -195623466 + AT_rich Low_complexity Low_complexity 1 28 0 354 293 127 6 chr3 31902993 31903150 -195621428 - MER5B DNA MER1_type 0 178 3 4523 82 8 7 chr3 31903425 31904012 -195620566 + L1PB1 LINE L1 5564 6151 0 226 229 0 21 chr3 31904928 31904976 -195619602 - L2 LINE L2 -16 3297 3251 787 303 138 10 chr3 31905217 31905799 -195618779 + L2 LINE L2 2626 3300 -13 241 308 221 0 chr3 31905823 31905927 -195618651 - MIR SINE MIR -109 153 27 207 0 0 0 chr3 31906071 31906094 -195618484 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 336 246 164 0 chr3 31906127 31906237 -195618341 + MIR SINE MIR 132 259 -3 420 274 94 0 chr3 31907049 31907166 -195617412 + MIR SINE MIR 2 129 -133 237 333 12 0 chr3 31908086 31908170 -195616408 + MIR SINE MIR 160 244 -18 21 0 0 0 chr3 31908177 31908198 -195616380 + GC_rich Low_complexity Low_complexity 1 21 0 534 233 192 0 chr3 31911112 31911258 -195613320 + MER5A DNA MER1_type 9 182 -7 828 245 90 10 chr3 31911608 31911808 -195612770 - MIR SINE MIR -3 259 44 204 276 112 71 chr3 31911832 31912002 -195612576 - MIR3 SINE MIR -11 197 21 459 258 126 6 chr3 31912399 31912566 -195612012 - MIR SINE MIR -9 253 67 246 311 22 22 chr3 31912591 31912681 -195611897 - MIR SINE MIR -67 141 52 1761 143 39 18 chr3 31912862 31913148 -195611430 + AluJb SINE Alu 1 292 -20 41761 55 8 33 chr3 31913253 31919190 -195605388 + L1P2 LINE L1 2 5774 -380 7669 43 24 0 chr3 31919307 31920967 -195603611 + L1PA5 LINE L1 4465 6150 -4 1064 168 10 10 chr3 31921555 31921751 -195602827 + MER20 DNA MER1_type 24 219 0 2162 118 10 3 chr3 31922053 31922350 -195602228 + AluSq SINE Alu 1 299 -14 282 287 36 90 chr3 31923031 31923118 -195601460 - MIR3 SINE MIR 0 208 133 2292 87 12 43 chr3 31923118 31923253 -195601325 + AluSx SINE Alu 1 139 -173 2257 112 0 3 chr3 31923253 31923558 -195601020 + AluSg SINE Alu 1 304 -6 2292 87 12 43 chr3 31923558 31923744 -195600834 + AluSx SINE Alu 139 312 0 282 287 36 90 chr3 31923744 31923823 -195600755 - MIR3 SINE MIR -75 133 51 488 264 84 53 chr3 31925104 31925331 -195599247 - MIR SINE MIR -12 250 17 302 279 0 0 chr3 31926346 31926414 -195598164 + L2 LINE L2 3205 3272 0 * 509 273 125 23 chr3 31926363 31926579 -195597999 - MIR SINE MIR -21 241 4 1254 253 87 35 chr3 31926786 31927190 -195597388 + MLT1J2 LTR MaLR 24 448 -2 362 283 10 0 chr3 31927343 31927442 -195597136 + MIR3 SINE MIR 101 200 -8 2248 69 21 10 chr3 31927465 31927754 -195596824 + AluY SINE Alu 1 292 -19 53 30 0 0 chr3 31928196 31928263 -195596315 + AT_rich Low_complexity Low_complexity 1 67 0 2407 84 0 7 chr3 31929120 31929429 -195595149 + AluY SINE Alu 1 307 -4 183 222 0 0 chr3 31929453 31929498 -195595080 + T-rich Low_complexity Low_complexity 1 45 0 202 191 0 48 chr3 31929729 31929771 -195594807 - L2 LINE L2 -11 3302 3263 188 281 94 0 chr3 31929808 31929872 -195594706 - MIR SINE MIR -36 226 157 277 259 0 0 chr3 31929884 31929942 -195594636 - MER5B DNA MER1_type -115 63 6 32 26 0 0 chr3 31930010 31930049 -195594529 + AT_rich Low_complexity Low_complexity 1 39 0 1518 140 24 113 chr3 31930123 31930451 -195594127 + AluJb SINE Alu 4 302 -10 353 137 0 0 chr3 31930865 31930916 -195593662 - MER5A DNA MER1_type 0 189 139 181 196 0 71 chr3 31930975 31931031 -195593547 + MER5A DNA MER1_type 136 187 -2 639 244 29 29 chr3 31931038 31931210 -195593368 + MER5B DNA MER1_type 7 178 0 626 188 24 79 chr3 31931217 31931345 -195593233 - MER5B DNA MER1_type -14 164 45 1927 155 0 0 chr3 31931345 31931636 -195592942 + AluJb SINE Alu 1 291 -21 626 188 24 79 chr3 31931636 31931672 -195592906 - MER5B DNA MER1_type -133 45 9 210 233 17 17 chr3 31932036 31932096 -195592482 + MIR SINE MIR 81 140 -68 242 304 0 0 chr3 31932619 31932698 -195591880 + (ATGGTG)n Simple_repeat Simple_repeat 5 83 0 551 236 16 47 chr3 31934636 31934827 -195589751 + L1MC4 LINE L1 7858 8042 0 340 256 50 89 chr3 31935193 31935552 -195589026 + L1ME4a LINE L1 5531 5875 -246 285 347 10 0 chr3 31935921 31936019 -195588559 - MIR3 SINE MIR -17 191 93 411 283 19 8 chr3 31936113 31936294 -195588284 + L1M4 LINE L1 5240 5420 -742 925 209 65 23 chr3 31937892 31938107 -195586471 + MER58A DNA MER1_type 1 224 0 517 337 32 4 chr3 31939033 31939285 -195585293 + Charlie8 DNA MER1_type 3 261 -2156 968 161 17 11 chr3 31939625 31939799 -195584779 + AluJb SINE Alu 138 312 0 21 0 0 0 chr3 31940353 31940374 -195584204 + AT_rich Low_complexity Low_complexity 1 21 0 433 270 224 0 chr3 31940481 31940633 -195583945 + MER5A DNA MER1_type 4 189 0 252 298 31 78 chr3 31940962 31941153 -195583425 + MIR SINE MIR 7 188 -74 423 345 57 23 chr3 31941349 31941526 -195583052 + L2 LINE L2 3090 3272 0 412 139 0 14 chr3 31942252 31942324 -195582254 + MLT1K LTR MaLR 516 586 -2 251 301 197 5 chr3 31943774 31943987 -195580591 - L2 LINE L2 -573 2741 2488 200 260 68 41 chr3 31943994 31944067 -195580511 - L2 LINE L2 -47 3225 3151 432 295 240 18 chr3 31944363 31944477 -195580101 + L3 LINE CR1 901 988 -589 719 181 0 9 chr3 31944477 31944753 -195579825 + FLAM_A SINE Alu 1 275 0 432 295 240 18 chr3 31944753 31944964 -195579614 + L3 LINE CR1 988 1302 -275 284 363 44 39 chr3 31945947 31946129 -195578449 - L2 LINE L2 -402 2912 2730 386 127 127 0 chr3 31946227 31946298 -195578280 + MADE1 DNA Mariner 1 80 0 244 260 192 41 chr3 31947395 31947541 -195577037 + MIR SINE MIR 39 206 -56 222 241 0 37 chr3 31948657 31948711 -195575867 + CT-rich Low_complexity Low_complexity 3 54 0 222 37 0 0 chr3 31949388 31949415 -195575163 + (TG)n Simple_repeat Simple_repeat 1 27 0 2063 153 0 0 chr3 31950077 31950377 -195574201 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 31950635 31950707 -195573871 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 31950970 31951102 -195573476 - MER119 DNA MER1_type 0 583 452 408 300 67 0 chr3 31951105 31951225 -195573353 - MER119 DNA MER1_type -455 128 1 829 165 94 0 chr3 31951808 31951978 -195572600 - MER5A DNA MER1_type -1 188 3 553 211 186 0 chr3 31952868 31953024 -195571554 + MER5A DNA MER1_type 5 189 0 197 282 103 0 chr3 31953266 31953344 -195571234 - L3b LINE CR1 -396 1187 1102 189 271 51 76 chr3 31953686 31953804 -195570774 + L2 LINE L2 3154 3268 -4 425 196 98 127 chr3 31954164 31954337 -195570241 + MER5B DNA MER1_type 10 177 -1 669 286 162 53 chr3 31954363 31954999 -195569579 + L2 LINE L2 2615 3308 -5 738 212 8 86 chr3 31955167 31955412 -195569166 + L1MB7 LINE L1 5949 6174 -10 238 266 86 55 chr3 31956340 31956468 -195568110 - MIR SINE MIR -76 132 1 2283 93 0 0 chr3 31956766 31957046 -195567532 + AluSx SINE Alu 1 280 -32 261 57 0 0 chr3 31957046 31957081 -195567497 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 548 225 0 0 chr3 31957221 31957332 -195567246 + MIR SINE MIR 152 262 0 331 281 21 115 chr3 31958434 31958669 -195565909 - MIR SINE MIR 0 262 50 378 277 164 6 chr3 31958742 31958901 -195565677 - MIR SINE MIR -56 206 23 373 235 223 6 chr3 31959619 31959785 -195564793 + LTR50 LTR ERVL 2 203 -592 477 299 117 6 chr3 31959839 31960167 -195564411 + LTR50 LTR ERVL 345 795 0 245 157 0 20 chr3 31960999 31961050 -195563528 + MADE1 DNA Mariner 1 50 -30 362 111 0 0 chr3 31961081 31961135 -195563443 + MADE1 DNA Mariner 26 79 -1 1822 181 0 20 chr3 31961551 31961855 -195562723 + AluJo SINE Alu 2 299 -13 851 316 103 58 chr3 31962171 31963282 -195561296 + L1MC4a LINE L1 2816 3975 -2171 299 304 42 6 chr3 31963309 31963477 -195561101 + L1MC4a LINE L1 4674 4847 -1299 486 230 28 51 chr3 31963783 31964000 -195560578 + L1MC4a LINE L1 5736 5947 -1861 242 56 28 0 chr3 31964164 31964200 -195560378 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr3 31964310 31964331 -195560247 + AT_rich Low_complexity Low_complexity 1 21 0 459 209 147 31 chr3 31964459 31964622 -195559956 - L2 LINE L2 0 3313 3132 543 246 56 26 chr3 31964718 31964913 -195559665 - Charlie8 DNA MER1_type -2180 237 37 283 315 64 46 chr3 31965160 31965217 -195559361 + MARNA DNA Mariner 286 340 -246 2224 54 15 97 chr3 31965217 31965548 -195559030 + AluY SINE Alu 1 304 -7 283 315 64 46 chr3 31965548 31965709 -195558869 + MARNA DNA Mariner 340 508 -78 238 357 0 0 chr3 31966399 31966469 -195558109 - L2 LINE L2 -15 3257 3188 195 68 23 45 chr3 31966487 31966531 -195558047 + (CAATA)n Simple_repeat Simple_repeat 3 45 0 438 328 90 17 chr3 31966692 31967058 -195557520 - L2 LINE L2 -222 3050 2655 1022 301 75 72 chr3 31967060 31968104 -195556474 - L2 LINE L2 -1084 2230 1184 443 272 76 38 chr3 31968135 31968293 -195556285 + MIR3 SINE MIR 35 198 -10 27 49 0 0 chr3 31968355 31968396 -195556182 + AT_rich Low_complexity Low_complexity 1 41 0 833 212 45 0 chr3 31968672 31968851 -195555727 - MER58A DNA MER1_type 0 224 38 442 273 52 38 chr3 31969862 31970038 -195554540 - MIR SINE MIR -58 150 3 450 237 160 30 chr3 31970043 31970212 -195554366 - MIR3 SINE MIR -14 194 4 207 0 0 0 chr3 31970753 31970776 -195553802 + (T)n Simple_repeat Simple_repeat 1 23 0 1383 166 59 7 chr3 31971020 31971291 -195553287 - L1MB8 LINE L1 -9 6169 5885 3267 252 116 85 chr3 31971687 31972353 -195552225 + L2 LINE L2 1165 1808 -1505 2433 78 7 7 chr3 31972353 31972661 -195551917 + AluSc SINE Alu 1 308 -1 3267 252 116 85 chr3 31972661 31974074 -195550504 + L2 LINE L2 1808 3305 -8 630 321 72 9 chr3 31974384 31974605 -195549973 - MIR SINE MIR -27 235 1 317 304 8 40 chr3 31974712 31974837 -195549741 + L2 LINE L2 3189 3309 -4 445 284 226 0 chr3 31975168 31975376 -195549202 + L2 LINE L2 2705 2959 -355 308 310 50 0 chr3 31975380 31975480 -195549098 - MIR SINE MIR -62 146 42 21 36 0 0 chr3 31976601 31976629 -195547949 + AT_rich Low_complexity Low_complexity 1 28 0 261 258 45 0 chr3 31976790 31976879 -195547699 + L1ME LINE L1 5666 5758 -363 187 133 44 0 chr3 31978049 31978094 -195546484 + GA-rich Low_complexity Low_complexity 2 48 0 1756 243 153 31 chr3 31978411 31978585 -195545993 + HAL1b LINE L1 127 278 -1070 2884 136 15 2 chr3 31978585 31979064 -195545514 + MER31A LTR ERV1 1 485 0 1756 243 153 31 chr3 31979064 31979951 -195544627 + HAL1b LINE L1 278 1318 -30 25 65 0 0 chr3 31979970 31980016 -195544562 + AT_rich Low_complexity Low_complexity 1 46 0 405 0 0 0 chr3 31980411 31980456 -195544122 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 204 0 19 chr3 31980463 31980517 -195544061 - AluJ/FRAM SINE Alu -31 271 219 363 136 0 0 chr3 31980518 31980577 -195544001 + (CA)n Simple_repeat Simple_repeat 1 59 0 1669 167 0 39 chr3 31980588 31980870 -195543708 - AluJo SINE Alu -41 271 1 334 360 80 0 chr3 31981825 31981975 -195542603 + MIR3 SINE MIR 30 191 -17 197 0 0 67 chr3 31982914 31982944 -195541634 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 1629 198 3 13 chr3 31983197 31983535 -195541043 + AluJo SINE Alu 3 312 0 219 36 0 0 chr3 31984264 31984292 -195540286 + (CA)n Simple_repeat Simple_repeat 2 29 0 410 215 66 66 chr3 31984369 31984490 -195540088 - L2 LINE L2 -1 3312 3192 867 230 60 57 chr3 31984675 31985006 -195539572 + MER46C DNA MER2_type 7 338 0 355 57 0 19 chr3 31985333 31985386 -195539192 + MER113 DNA MER1_type? 142 193 -328 231 200 15 31 chr3 31985681 31985746 -195538832 + CT-rich Low_complexity Low_complexity 2 65 0 22 35 0 0 chr3 31986375 31986404 -195538174 + AT_rich Low_complexity Low_complexity 1 29 0 197 338 44 0 chr3 31986475 31986543 -195538035 + MIR3 SINE MIR 115 185 -23 292 299 21 70 chr3 31986887 31987074 -195537504 - MER5B DNA MER1_type 0 178 1 523 336 57 16 chr3 31987515 31987762 -195536816 + MIR SINE MIR 6 262 0 1072 169 12 0 chr3 31988331 31988503 -195536075 + MER20 DNA MER1_type 31 204 -15 988 210 16 0 chr3 31988510 31988696 -195535882 - MER5A DNA MER1_type 0 189 1 230 344 199 23 chr3 31989347 31989603 -195534975 + L3b LINE CR1 1254 1554 -29 202 374 86 22 chr3 31989801 31989940 -195534638 + L2 LINE L2 3121 3268 -4 1673 206 3 0 chr3 31989972 31990278 -195534300 - AluJo SINE Alu -5 307 1 1361 65 0 6 chr3 31990517 31990687 -195533891 - AluY SINE Alu -12 299 131 272 258 43 62 chr3 31990791 31991047 -195533531 + L1M4 LINE L1 3053 3303 -2843 21 0 0 0 chr3 31991085 31991106 -195533472 + AT_rich Low_complexity Low_complexity 1 21 0 1248 271 91 35 chr3 31991113 31991760 -195532818 + L1M4 LINE L1 3289 3971 -2175 2255 197 14 7 chr3 31991779 31992205 -195532373 - MER88 LTR ERVL -35 429 1 251 295 70 39 chr3 31992426 31992555 -195532023 + L2 LINE L2 2932 3064 -208 1004 190 27 0 chr3 31992927 31993111 -195531467 + MER5A DNA MER1_type 1 189 0 2747 10 0 7 chr3 31993150 31993455 -195531123 + AluYb8 SINE Alu 1 303 -15 182 260 14 0 chr3 31994395 31994468 -195530110 + GA-rich Low_complexity Low_complexity 2 75 0 220 297 0 16 chr3 31994732 31994796 -195529782 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 197 65 32 0 chr3 31994800 31994831 -195529747 + (TG)n Simple_repeat Simple_repeat 2 33 0 379 265 31 60 chr3 31995321 31995542 -195529036 + MLT1J LTR MaLR 235 475 -36 303 285 73 33 chr3 31995651 31995802 -195528776 + MIR SINE MIR 20 176 -86 2152 55 3 93 chr3 31995901 31996255 -195528323 + AluY SINE Alu 1 326 0 206 171 24 0 chr3 31996444 31996485 -195528093 + GA-rich Low_complexity Low_complexity 3 44 0 194 179 77 0 chr3 31997789 31997828 -195526750 + MIR SINE MIR 111 152 -56 2121 52 0 4 chr3 31998712 31998962 -195525616 - AluY SINE Alu -13 298 50 22 0 0 0 chr3 32000168 32000190 -195524388 + AT_rich Low_complexity Low_complexity 1 22 0 732 310 22 4 chr3 32001265 32001497 -195523081 - MIR SINE MIR -9 253 18 498 129 0 0 chr3 32002304 32002389 -195522189 + (TCC)n Simple_repeat Simple_repeat 3 87 0 203 0 0 36 chr3 32002391 32002419 -195522159 + (TC)n Simple_repeat Simple_repeat 2 28 0 560 322 98 13 chr3 32002554 32002963 -195521615 - L1MC/D LINE L1 -485 5636 5317 183 80 0 0 chr3 32003133 32003158 -195521420 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 342 174 23 12 chr3 32003169 32003222 -195521356 - L1MB1 LINE L1 -4 6185 6129 1918 150 7 13 chr3 32003222 32003522 -195521056 - AluSx SINE Alu -12 300 3 342 174 23 12 chr3 32003522 32003554 -195521024 - L1MB1 LINE L1 -60 6129 6099 1159 252 79 87 chr3 32003554 32004073 -195520505 + MLT1H LTR MaLR 13 527 -22 1113 262 159 11 chr3 32004223 32004677 -195519901 - LTR33A LTR ERVL 0 523 3 217 354 73 48 chr3 32004810 32005126 -195519452 - L2 LINE L2 -338 2976 2653 477 286 79 11 chr3 32005589 32005767 -195518811 - MER117 DNA MER1_type -7 190 1 326 79 53 0 chr3 32005887 32005963 -195518615 + (TA)n Simple_repeat Simple_repeat 2 81 0 515 197 22 164 chr3 32006609 32006883 -195517695 + MER112 DNA MER1_type 19 253 -7 476 186 62 87 chr3 32007501 32007662 -195516916 + MIR SINE MIR 106 262 0 472 230 36 7 chr3 32007789 32007928 -195516650 + L1MA10 LINE L1 6181 6323 -11 25 31 0 0 chr3 32007940 32007972 -195516606 + AT_rich Low_complexity Low_complexity 1 32 0 437 293 106 34 chr3 32007972 32008483 -195516095 + L1ME3A LINE L1 1687 2260 -4136 1781 251 66 22 chr3 32008621 32009346 -195515232 + L1ME3A LINE L1 2403 3159 -3056 2529 253 74 39 chr3 32009459 32011370 -195513208 + L1ME3A LINE L1 4251 6232 -7 629 219 101 25 chr3 32011764 32012002 -195512576 + MER112 DNA MER1_type 1 256 0 197 125 25 25 chr3 32012014 32012054 -195512524 + L2 LINE L2 3269 3308 -5 494 259 51 28 chr3 32013218 32013434 -195511144 + L1ME4a LINE L1 5859 6079 -42 829 72 0 0 chr3 32014534 32014645 -195509933 - L1P3 LINE L1 -336 5818 5708 2168 91 10 0 chr3 32014645 32014942 -195509636 + L1PA13 LINE L1 5860 6160 -3 232 206 0 109 chr3 32015412 32015504 -195509074 + L1MC4a LINE L1 6964 7045 -763 * 2724 205 28 23 chr3 32015501 32016145 -195508433 + L1MC4 LINE L1 7216 7862 -180 2195 199 30 7 chr3 32016428 32016835 -195507743 - MLT-int LTR MaLR -36 1699 1284 240 181 36 72 chr3 32016897 32016980 -195507598 - MLT-int LTR MaLR -980 755 676 227 279 0 44 chr3 32017039 32017107 -195507471 - MLT1-int LTR MaLR -488 883 819 804 137 123 0 chr3 32017129 32017275 -195507303 - MLT1-int LTR MaLR -1567 168 5 355 280 91 42 chr3 32017752 32017895 -195506683 - MIR3 SINE MIR -15 193 44 243 79 0 0 chr3 32017899 32017937 -195506641 + (A)n Simple_repeat Simple_repeat 1 38 0 242 312 18 0 chr3 32018249 32018358 -195506220 - L1MC/D LINE L1 -2000 5808 5698 803 266 39 13 chr3 32018437 32018670 -195505908 + L2 LINE L2 3075 3313 0 469 373 78 23 chr3 32018675 32019243 -195505335 - L1MC/D LINE L1 -815 5331 4733 2566 226 11 16 chr3 32019571 32020120 -195504458 - MLT1H1 LTR MaLR 0 555 10 326 281 135 17 chr3 32020686 32020864 -195503714 - MIR SINE MIR -1 261 63 474 214 0 0 chr3 32020883 32020972 -195503606 + MER5A DNA MER1_type 10 98 -91 184 233 0 0 chr3 32021042 32021085 -195503493 - MER5B DNA MER1_type -3 175 133 610 219 22 51 chr3 32021120 32021257 -195503321 - MER5B DNA MER1_type -45 133 1 505 169 0 22 chr3 32021446 32021535 -195503043 - MER5B DNA MER1_type -90 88 2 547 259 116 11 chr3 32021535 32021724 -195502854 - Charlie8 DNA MER1_type -2185 232 24 332 237 11 32 chr3 32022572 32022665 -195501913 - MIR SINE MIR 0 262 172 * 1189 246 126 53 chr3 32022649 32023255 -195501323 + L2 LINE L2 2667 3313 0 435 250 62 14 chr3 32023253 32023397 -195501181 - MIR SINE MIR -65 197 47 * 195 235 0 0 chr3 32024921 32024955 -195499623 - L2 LINE L2 -17 3255 3222 582 312 74 2 chr3 32025007 32025197 -195499381 - MIR SINE MIR -55 207 7 2203 105 0 14 chr3 32027173 32027469 -195497109 - AluSc SINE Alu -12 297 6 188 324 176 19 chr3 32027610 32027718 -195496860 - L2 LINE L2 -4 3309 3185 23 0 0 0 chr3 32029411 32029434 -195495144 + AT_rich Low_complexity Low_complexity 1 23 0 617 105 0 0 chr3 32029434 32029520 -195495058 - FLAM_A SINE Alu -20 122 37 229 325 159 12 chr3 32029638 32029801 -195494777 - MIR SINE MIR -27 235 49 2491 219 36 16 chr3 32030048 32030688 -195493890 - MER97c DNA MER1_type? -437 653 1 538 331 22 6 chr3 32031344 32031525 -195493053 - MIR SINE MIR -76 186 3 21 57 0 0 chr3 32031829 32031864 -195492714 + AT_rich Low_complexity Low_complexity 1 35 0 572 274 8 0 chr3 32032601 32032725 -195491853 + MER63A DNA MER1_type 51 175 -35 270 314 20 29 chr3 32033086 32033188 -195491390 - MIR3 SINE MIR -54 154 54 2752 119 16 5 chr3 32034067 32034496 -195490082 + MER57B LTR ERV1 1 434 0 41 58 0 0 chr3 32035665 32035734 -195488844 + AT_rich Low_complexity Low_complexity 1 69 0 191 98 0 103 chr3 32035737 32035921 -195488657 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 25 31 0 0 chr3 32035931 32035963 -195488615 + AT_rich Low_complexity Low_complexity 1 32 0 198 311 54 0 chr3 32036089 32036163 -195488415 - MIR SINE MIR -82 180 103 216 0 0 0 chr3 32036179 32036203 -195488375 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 619 325 83 20 chr3 32036566 32036914 -195487664 + L1MEc LINE L1 92 461 -5935 324 273 196 59 chr3 32037287 32037332 -195487246 + MLT1K LTR MaLR 2 39 -549 1477 167 4 30 chr3 32037332 32037595 -195486983 - AluJb SINE Alu -16 296 41 324 273 196 59 chr3 32037595 32037886 -195486692 + MLT1K LTR MaLR 39 384 -204 235 260 181 8 chr3 32038115 32038242 -195486336 + MIR3 SINE MIR 57 205 -3 341 265 10 20 chr3 32039351 32039453 -195485125 - MIR SINE MIR -34 228 128 207 208 21 0 chr3 32039511 32039559 -195485019 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 21 36 0 0 chr3 32039631 32039659 -195484919 + AT_rich Low_complexity Low_complexity 1 28 0 258 284 34 0 chr3 32040469 32040557 -195484021 + MER94 DNA DNA 41 131 -3 283 362 83 24 chr3 32040587 32040841 -195483737 + L2 LINE L2 2656 2924 -390 298 242 89 24 chr3 32041084 32041208 -195483370 - MIR SINE MIR -50 212 81 2397 97 0 0 chr3 32041225 32041523 -195483055 + AluSc SINE Alu 1 298 -11 188 273 41 103 chr3 32042826 32043020 -195481558 + L2 LINE L2 2494 2675 -639 * 340 405 136 14 chr3 32042991 32043337 -195481241 + L2 LINE L2 2847 3234 -38 243 0 0 0 chr3 32043341 32043368 -195481210 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 212 100 25 0 chr3 32043412 32043452 -195481126 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 40 0 0 0 chr3 32044380 32044420 -195480158 + AT_rich Low_complexity Low_complexity 1 40 0 303 329 68 4 chr3 32044778 32045015 -195479563 - L1ME4a LINE L1 -237 5884 5633 598 64 11 43 chr3 32045440 32045534 -195479044 + L1PA11 LINE L1 6084 6174 0 369 298 48 0 chr3 32046322 32046446 -195478132 + L2 LINE L2 2929 3058 -255 318 250 60 69 chr3 32046570 32046786 -195477792 + MER112 DNA MER1_type 33 246 -14 204 281 260 0 chr3 32046840 32046936 -195477642 + L2 LINE L2 3193 3313 0 1075 191 5 0 chr3 32047801 32047989 -195476589 - MER5A DNA MER1_type 0 189 1 1135 202 9 5 chr3 32047997 32048215 -195476363 + MER20 DNA MER1_type 1 219 0 765 311 79 65 chr3 32048884 32049738 -195474840 + L2 LINE L2 2358 3245 -27 1229 292 83 12 chr3 32050010 32050489 -195474089 - L2 LINE L2 -408 2906 2394 186 252 217 17 chr3 32050491 32050606 -195473972 + L2 LINE L2 2991 3128 -144 335 315 109 11 chr3 32051418 32051619 -195472959 - MIR SINE MIR -40 222 7 181 330 117 19 chr3 32051660 32051763 -195472815 - L3 LINE CR1 -160 1417 1305 416 297 68 40 chr3 32051940 32052162 -195472416 - L3 LINE CR1 -274 1303 1076 21 0 0 0 chr3 32053659 32053680 -195470898 + AT_rich Low_complexity Low_complexity 1 21 0 193 244 12 12 chr3 32053688 32053770 -195470808 + CT-rich Low_complexity Low_complexity 3 84 0 240 318 173 17 chr3 32054233 32054412 -195470166 + L2 LINE L2 2993 3199 -73 370 258 167 0 chr3 32054541 32054673 -195469905 + MIR SINE MIR 84 237 -25 225 83 0 0 chr3 32054957 32054993 -195469585 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1465 196 0 8 chr3 32055119 32055379 -195469199 + AluJo SINE Alu 1 258 -54 195 42 0 0 chr3 32055404 32055428 -195469150 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 435 287 103 35 chr3 32055856 32056030 -195468548 + L2 LINE L2 3120 3305 -8 2201 232 76 16 chr3 32056378 32057050 -195467528 + L1ME3 LINE L1 5421 6132 -30 255 224 78 9 chr3 32058739 32058855 -195465723 - MER113 DNA MER1_type? -307 214 91 1154 171 68 62 chr3 32059074 32059396 -195465182 + MER33 DNA MER1_type 1 324 0 616 232 161 0 chr3 32060789 32060944 -195463634 - MER5A DNA MER1_type -6 183 4 2138 128 0 7 chr3 32062749 32063039 -195461539 + AluSx SINE Alu 1 288 -24 2286 119 0 0 chr3 32063577 32063880 -195460698 - AluSx SINE Alu -9 303 1 192 311 16 33 chr3 32063916 32063977 -195460601 + L2 LINE L2 3201 3260 -12 2286 113 0 0 chr3 32064101 32064403 -195460175 - AluSg SINE Alu -4 306 5 827 273 73 55 chr3 32064855 32065199 -195459379 - L2 LINE L2 -4 3309 2960 369 281 201 35 chr3 32065266 32065665 -195458913 + L1ME LINE L1 5255 5600 -521 712 335 46 44 chr3 32065727 32066231 -195458347 + L2 LINE L2 2283 2787 -527 2097 136 0 3 chr3 32066644 32066945 -195457633 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 32067203 32067275 -195457303 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 32067538 32067670 -195456908 - MER119 DNA MER1_type 0 583 452 343 244 96 17 chr3 32067673 32067788 -195456790 - MER119 DNA MER1_type -455 128 5 6594 55 30 1 chr3 32068278 32069251 -195455327 + L1P LINE L1 3208 4208 -1938 307 349 94 7 chr3 32070073 32070222 -195454356 + MIR3 SINE MIR 30 191 -17 1482 288 178 31 chr3 32070894 32072198 -195452380 - L2 LINE L2 -8 3305 1817 389 276 92 32 chr3 32072791 32072976 -195451602 + L2 LINE L2 3071 3266 -6 22 35 0 0 chr3 32073221 32073250 -195451328 + AT_rich Low_complexity Low_complexity 1 29 0 1749 100 0 58 chr3 32073861 32074122 -195450456 - AluY SINE Alu -65 246 1 353 267 61 8 chr3 32074426 32074557 -195450021 + Charlie8 DNA MER1_type 37 174 -2243 724 183 120 40 chr3 32124919 32125094 -195399484 + MER5A DNA MER1_type 1 189 0 459 267 148 29 chr3 32125474 32125826 -195398752 - L1M4 LINE L1 -319 5802 5446 471 280 19 55 chr3 32126242 32126408 -195398170 + MIR SINE MIR 14 183 -67 709 269 39 0 chr3 32126414 32126596 -195397982 + MIR SINE MIR 8 196 -66 222 150 0 0 chr3 32126598 32126638 -195397940 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 284 208 26 39 chr3 32128725 32128802 -195395776 - L2 LINE L2 -6 3307 3232 184 170 62 9 chr3 32129745 32129857 -195394721 + (TA)n Simple_repeat Simple_repeat 2 119 0 554 256 249 7 chr3 32129871 32130176 -195394402 + L3 LINE CR1 429 807 -770 851 109 0 47 chr3 32130188 32130316 -195394262 - FLAM_C SINE Alu -19 124 3 216 281 49 0 chr3 32130320 32130402 -195394176 + L3 LINE CR1 796 881 -696 400 282 14 21 chr3 32130868 32131010 -195393568 + L1ME3 LINE L1 4881 5021 -1125 279 0 0 0 chr3 32131766 32131797 -195392781 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 266 84 62 chr3 32131823 32132439 -195392139 + L1ME3 LINE L1 5320 5949 -213 469 333 50 50 chr3 32132940 32133201 -195391377 + L3 LINE CR1 1011 1271 -306 589 247 7 39 chr3 32133572 32133673 -195390905 + MIR SINE MIR 63 159 -103 2389 183 49 10 chr3 32133673 32134159 -195390419 + MLT1D LTR MaLR 1 505 0 589 247 7 39 chr3 32134159 32134211 -195390367 + MIR SINE MIR 159 211 -51 186 103 0 0 chr3 32136969 32136998 -195387580 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 127 45 36 chr3 32137551 32137661 -195386917 + (TA)n Simple_repeat Simple_repeat 1 111 0 2862 132 48 2 chr3 32137664 32138163 -195386415 + L1MA4 LINE L1 5774 6295 -5 27 0 0 0 chr3 32138580 32138607 -195385971 + AT_rich Low_complexity Low_complexity 1 27 0 351 0 0 0 chr3 32139001 32139040 -195385538 + (TG)n Simple_repeat Simple_repeat 1 39 0 988 229 76 89 chr3 32139380 32139843 -195384735 - LTR16A1 LTR ERVL 0 457 1 970 341 152 34 chr3 32140107 32140895 -195383683 - L3 LINE CR1 -104 1473 593 21 0 0 0 chr3 32141024 32141045 -195383533 + AT_rich Low_complexity Low_complexity 1 21 0 1378 265 64 12 chr3 32141349 32141879 -195382699 - MLT1E LTR MaLR -3 590 1 434 238 18 39 chr3 32142728 32142896 -195381682 - MIR SINE MIR 0 262 44 2459 68 7 3 chr3 32143045 32143355 -195381223 + AluSp SINE Alu 1 311 -2 2100 118 7 3 chr3 32143404 32143692 -195380886 + AluSc SINE Alu 2 290 -19 280 313 72 4 chr3 32143939 32144204 -195380374 + L1P LINE L1 3604 3886 -2260 451 387 22 9 chr3 32144233 32144463 -195380115 - MIR SINE MIR -27 235 3 790 310 152 49 chr3 32144496 32145107 -195379471 + L1ME4a LINE L1 3914 4461 -1685 1804 116 76 4 chr3 32145107 32145384 -195379194 - AluSq SINE Alu -14 299 3 790 310 152 49 chr3 32145384 32145788 -195378790 + L1ME4a LINE L1 4461 5033 -1113 27 0 0 0 chr3 32146096 32146123 -195378455 + AT_rich Low_complexity Low_complexity 1 27 0 339 293 68 0 chr3 32146194 32146327 -195378251 + L1ME4a LINE L1 5576 5717 -404 680 238 136 8 chr3 32146360 32146595 -195377983 + L1ME4a LINE L1 5781 6045 -76 811 234 42 5 chr3 32147261 32147453 -195377125 + MLT1D LTR MaLR 2 200 -305 22 0 0 0 chr3 32147598 32147620 -195376958 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 32147689 32147711 -195376867 + AT_rich Low_complexity Low_complexity 1 22 0 263 175 18 0 chr3 32150474 32150531 -195374047 + GA-rich Low_complexity Low_complexity 4 61 0 24 53 0 0 chr3 32151478 32151516 -195373062 + AT_rich Low_complexity Low_complexity 1 38 0 2368 88 0 10 chr3 32151728 32152033 -195372545 - AluSg SINE Alu -8 302 1 1065 209 17 13 chr3 32152629 32152863 -195371715 - MER96B DNA MER1_type? -182 235 1 450 273 62 14 chr3 32153459 32153668 -195370910 + L2 LINE L2 2298 2516 -798 727 282 73 29 chr3 32153690 32153935 -195370643 - MIR SINE MIR -2 260 5 * 808 337 35 37 chr3 32153930 32154387 -195370191 + L2 LINE L2 2520 2975 -339 373 163 146 10 chr3 32154535 32154650 -195369928 + L1MB8 LINE L1 5208 5335 -811 1725 171 28 36 chr3 32154650 32155037 -195369541 + L1MB8 LINE L1 5795 6178 0 194 311 54 81 chr3 32155241 32155389 -195369189 - MIR3 SINE MIR -1 207 64 252 0 0 0 chr3 32155603 32155631 -195368947 + (T)n Simple_repeat Simple_repeat 1 28 0 1782 169 0 20 chr3 32156542 32156844 -195367734 + AluJo SINE Alu 1 296 -16 202 188 0 62 chr3 32157080 32157160 -195367418 + A-rich Low_complexity Low_complexity 1 75 0 481 296 88 22 chr3 32157587 32157813 -195366765 + MER102a DNA MER1_type 74 314 -16 472 215 222 0 chr3 32158444 32158588 -195365990 - MER5A DNA MER1_type 0 189 14 33 25 0 0 chr3 32159420 32159460 -195365118 + AT_rich Low_complexity Low_complexity 1 40 0 6488 60 18 13 chr3 32159460 32160328 -195364250 - L1PA7 LINE L1 -7 6147 5275 678 315 22 9 chr3 32161688 32161920 -195362658 + MIR SINE MIR 28 262 0 506 283 163 0 chr3 32162336 32162594 -195361984 + L1ME4a LINE L1 5740 6039 -82 343 266 35 18 chr3 32162757 32162870 -195361708 + MIR3 SINE MIR 90 204 -4 1540 125 73 62 chr3 32163763 32164052 -195360526 - AluJo SINE Alu -20 292 1 2597 48 7 0 chr3 32164459 32164768 -195359810 + AluY SINE Alu 1 311 0 454 316 24 24 chr3 32164888 32165225 -195359353 - L1MEc LINE L1 -3776 2463 2144 350 308 66 25 chr3 32165534 32165820 -195358758 - HAL1 LINE L1 -744 1763 1466 1919 149 0 3 chr3 32165909 32166198 -195358380 - AluSx SINE Alu -24 288 1 657 234 89 40 chr3 32166343 32166591 -195357987 - HAL1 LINE L1 -2 2505 2246 253 234 31 88 chr3 32166628 32166820 -195357758 - HAL1 LINE L1 -1211 1296 1116 * 633 282 66 12 chr3 32166819 32167060 -195357518 - HAL1 LINE L1 -1749 758 505 14943 131 21 3 chr3 32167061 32169373 -195355205 - Tigger1 DNA MER2_type 0 2418 65 260 172 0 241 chr3 32169373 32169489 -195355089 - Tigger1 DNA MER2_type -2329 89 2 210 356 33 11 chr3 32169540 32169630 -195354948 + L2 LINE L2 2970 3061 -211 275 335 77 11 chr3 32170670 32170846 -195353732 - MIR SINE MIR -29 233 46 760 246 209 5 chr3 32170846 32171057 -195353521 + MIR SINE MIR 3 256 -6 2253 100 0 0 chr3 32171122 32171412 -195353166 - AluSx SINE Alu -22 290 1 378 299 220 4 chr3 32171431 32171672 -195352906 - L3 LINE CR1 -296 1281 989 936 182 6 0 chr3 32171695 32171854 -195352724 + MER5A DNA MER1_type 29 188 -1 710 337 57 12 chr3 32171993 32172325 -195352253 - L3 LINE CR1 -774 803 457 281 284 119 72 chr3 32172524 32172718 -195351860 - MIR SINE MIR -55 207 5 39 38 0 0 chr3 32173379 32173432 -195351146 + AT_rich Low_complexity Low_complexity 1 53 0 520 47 0 0 chr3 32173818 32173882 -195350696 - L1P LINE L1 -748 5424 5361 5597 50 3 30 chr3 32173882 32174614 -195349964 + L1PA7 LINE L1 5436 6151 -3 484 251 80 43 chr3 32174846 32175033 -195349545 - MER117 DNA MER1_type 0 197 4 28 71 0 0 chr3 32175727 32175783 -195348795 + AT_rich Low_complexity Low_complexity 1 56 0 212 186 23 0 chr3 32175958 32176001 -195348577 + (TATG)n Simple_repeat Simple_repeat 3 46 0 209 30 61 0 chr3 32176026 32176059 -195348519 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 325 225 134 82 chr3 32177519 32177585 -195346993 + MER112 DNA MER1_type 17 78 -182 297 0 0 0 chr3 32177585 32177618 -195346960 + (TG)n Simple_repeat Simple_repeat 1 33 0 325 225 134 82 chr3 32177618 32177782 -195346796 + MER112 DNA MER1_type 78 259 -1 531 220 164 19 chr3 32177912 32178071 -195346507 - MER5A DNA MER1_type -1 188 7 21 36 0 0 chr3 32178723 32178751 -195345827 + AT_rich Low_complexity Low_complexity 1 28 0 320 217 142 38 chr3 32178786 32178892 -195345686 + L2 LINE L2 3156 3272 0 226 363 0 0 chr3 32179050 32179130 -195345448 + GA-rich Low_complexity Low_complexity 2 81 0 856 171 4 152 chr3 32179355 32179513 -195345065 + MER20 DNA MER1_type 1 109 -110 2248 63 0 14 chr3 32179513 32179827 -195344751 + AluY SINE Alu 1 310 0 856 171 4 152 chr3 32179827 32179924 -195344654 + MER20 DNA MER1_type 109 219 0 1355 272 87 13 chr3 32180262 32180710 -195343868 + LTR16C LTR ERVL 5 485 -6 267 79 0 0 chr3 32181716 32181754 -195342824 + (T)n Simple_repeat Simple_repeat 1 38 0 188 262 0 0 chr3 32182000 32182042 -195342536 - L2 LINE L2 -88 3225 3184 21 0 0 0 chr3 32182332 32182353 -195342225 + AT_rich Low_complexity Low_complexity 1 21 0 586 338 29 0 chr3 32182728 32182932 -195341646 - MIR SINE MIR -12 250 41 252 0 0 0 chr3 32182980 32183008 -195341570 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 402 100 0 0 chr3 32183010 32183070 -195341508 + (TC)n Simple_repeat Simple_repeat 1 60 0 28 0 0 0 chr3 32183558 32183586 -195340992 + AT_rich Low_complexity Low_complexity 1 28 0 665 224 74 102 chr3 32184272 32184731 -195339847 + MLT1J1 LTR MaLR 1 446 0 1127 164 157 18 chr3 32184830 32185110 -195339468 + MER33 DNA MER1_type 6 324 0 986 196 16 0 chr3 32185135 32185319 -195339259 + MER58A DNA MER1_type 38 224 0 186 71 0 0 chr3 32185455 32185483 -195339095 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 264 351 170 25 chr3 32185923 32186276 -195338302 + L2 LINE L2 2574 2977 -337 190 279 0 0 chr3 32186415 32186458 -195338120 - MIR3 SINE MIR -45 163 121 1133 185 15 10 chr3 32186540 32186745 -195337833 + MER20 DNA MER1_type 1 206 -13 261 57 0 0 chr3 32187832 32187867 -195336711 + (CA)n Simple_repeat Simple_repeat 2 36 0 283 237 214 23 chr3 32187877 32188008 -195336570 - MER103 DNA DNA -7 159 4 21 0 0 0 chr3 32189388 32189409 -195335169 + AT_rich Low_complexity Low_complexity 1 21 0 1981 120 42 0 chr3 32189478 32189761 -195334817 + AluSc SINE Alu 9 303 -6 230 196 89 0 chr3 32190659 32190715 -195333863 + L2 LINE L2 3251 3311 -2 304 281 126 22 chr3 32190950 32191085 -195333493 - L2 LINE L2 0 3272 3124 647 303 8 90 chr3 32192652 32193008 -195331570 - L2 LINE L2 0 3313 2987 465 308 104 102 chr3 32195480 32196086 -195328492 + L1M2 LINE L1 445 1323 -5526 857 112 20 97 chr3 32198192 32198388 -195326190 - MER96B DNA MER1_type? -236 181 1 223 355 0 13 chr3 32198521 32198597 -195325981 - L2 LINE L2 -213 3059 2985 2739 196 69 44 chr3 32198857 32199510 -195325068 - MER45B DNA AcHobo -371 669 1 383 315 82 27 chr3 32199608 32199792 -195324786 - MIR SINE MIR -4 258 65 289 317 118 27 chr3 32200028 32200214 -195324364 + MLT1J2 LTR MaLR 241 443 -7 1344 217 19 5 chr3 32200362 32200790 -195323788 - L1ME3 LINE L1 0 6162 5617 699 256 15 15 chr3 32201755 32201950 -195322628 + MIR SINE MIR 53 247 -15 182 269 15 138 chr3 32202054 32202184 -195322394 - L2 LINE L2 -2 3311 3198 201 346 84 0 chr3 32202574 32202681 -195321897 + MIR3 SINE MIR 79 194 -14 29 28 0 0 chr3 32202980 32203016 -195321562 + AT_rich Low_complexity Low_complexity 1 36 0 212 322 130 55 chr3 32203478 32203624 -195320954 + MIR SINE MIR 100 256 -6 197 250 28 74 chr3 32203899 32204007 -195320571 + MIR SINE MIR 104 206 -56 851 204 72 152 chr3 32204479 32204667 -195319911 + L2 LINE L2 2889 3091 -222 963 202 5 5 chr3 32204667 32204855 -195319723 + MER5A DNA MER1_type 1 188 -1 851 204 72 152 chr3 32204855 32205126 -195319452 + L2 LINE L2 3091 3311 -2 330 26 0 0 chr3 32205693 32205732 -195318846 + (TG)n Simple_repeat Simple_repeat 2 40 0 831 277 138 43 chr3 32205970 32206435 -195318143 - MLT1H LTR MaLR -2 547 39 213 378 90 0 chr3 32206901 32207012 -195317566 - L2 LINE L2 -16 3256 3136 290 82 9 0 chr3 32207025 32207071 -195317507 + Alu SINE Alu 252 291 -11 425 76 15 0 chr3 32207085 32207151 -195317427 + (TA)n Simple_repeat Simple_repeat 1 67 0 245 333 95 9 chr3 32207152 32207257 -195317321 - L2 LINE L2 -186 3127 3014 551 189 39 18 chr3 32207274 32207560 -195317018 + (TA)n Simple_repeat Simple_repeat 1 292 0 235 94 0 0 chr3 32207561 32207593 -195316985 + (CA)n Simple_repeat Simple_repeat 2 33 0 947 156 47 47 chr3 32208281 32208492 -195316086 - MER20 DNA MER1_type -3 216 6 430 235 59 0 chr3 32210435 32210537 -195314041 - L3 LINE CR1 -910 667 560 334 325 43 0 chr3 32210564 32210681 -195313897 - L3 LINE CR1 -1129 448 327 1059 160 16 21 chr3 32211046 32211233 -195313345 + MER5A DNA MER1_type 4 189 0 419 265 125 45 chr3 32211324 32211524 -195313054 - MIR SINE MIR -2 260 45 2637 29 0 13 chr3 32211827 32212142 -195312436 - AluYa5 SINE Alu 0 311 1 579 255 153 0 chr3 32212241 32212398 -195312180 + MER5A DNA MER1_type 9 189 0 221 259 17 17 chr3 32212416 32212474 -195312104 - MIR SINE MIR -76 132 75 686 288 9 40 chr3 32212563 32212789 -195311789 - MIR SINE MIR -15 247 29 2253 105 16 3 chr3 32212932 32213237 -195311341 + AluSx SINE Alu 1 309 -3 306 0 0 0 chr3 32214221 32214255 -195310323 + (CA)n Simple_repeat Simple_repeat 1 34 0 182 365 21 10 chr3 32216255 32216351 -195308227 - MIR3 SINE MIR -7 201 105 662 264 119 57 chr3 32216427 32216881 -195307697 + MLT1J LTR MaLR 19 500 -11 244 267 0 0 chr3 32216894 32216954 -195307624 + L2 LINE L2 3240 3299 -14 300 325 58 34 chr3 32216958 32217164 -195307414 + L2 LINE L2 2448 2658 -656 575 299 0 0 chr3 32217403 32217537 -195307041 + L2 LINE L2 3180 3313 0 233 167 19 0 chr3 32217597 32217651 -195306927 + GA-rich Low_complexity Low_complexity 2 56 0 523 198 83 0 chr3 32217847 32217968 -195306610 + Charlie1 DNA MER1_type 2343 2473 -288 956 217 64 20 chr3 32217968 32218294 -195306284 + MSTD LTR MaLR 2 371 -25 845 152 15 131 chr3 32218303 32218632 -195305946 + Charlie1 DNA MER1_type 2471 2761 0 415 295 110 20 chr3 32218715 32218915 -195305663 + MIR SINE MIR 20 237 -25 425 234 45 0 chr3 32219015 32219126 -195305452 + MER63 DNA MER1_type 1 742 -94 731 200 41 0 chr3 32219544 32219689 -195304889 + MER5A DNA MER1_type 1 151 -38 723 239 93 11 chr3 32219825 32220187 -195304391 + LTR16A1 LTR ERVL 4 456 -1 459 364 31 5 chr3 32220187 32220382 -195304196 + MIR SINE MIR 27 226 -36 352 262 194 30 chr3 32220863 32221126 -195303452 + L2 LINE L2 2994 3299 -14 2039 236 43 7 chr3 32221130 32221714 -195302864 + L1ME3A LINE L1 5511 6115 -55 350 316 123 74 chr3 32221902 32222494 -195302084 - L1M2 LINE L1 -5456 1393 773 225 290 183 0 chr3 32223557 32223650 -195300928 + MIR3 SINE MIR 65 174 -34 661 274 107 31 chr3 32225776 32226093 -195298485 - MLT1J2 LTR MaLR -109 341 1 583 269 91 10 chr3 32226121 32226318 -195298260 - MIR SINE MIR -1 261 49 246 128 0 0 chr3 32227265 32227304 -195297274 + (TA)n Simple_repeat Simple_repeat 1 39 0 911 217 31 61 chr3 32228007 32228334 -195296244 + L1ME3A LINE L1 5854 6170 0 238 257 248 0 chr3 32229019 32229124 -195295454 - L2 LINE L2 -1 3271 3141 261 159 0 0 chr3 32229129 32229192 -195295386 + CT-rich Low_complexity Low_complexity 2 64 0 351 0 0 0 chr3 32229192 32229231 -195295347 + (CA)n Simple_repeat Simple_repeat 2 40 0 256 341 0 41 chr3 32229231 32229354 -195295224 - L2 LINE L2 -27 3286 3169 29 47 0 0 chr3 32229374 32229417 -195295161 + AT_rich Low_complexity Low_complexity 1 43 0 427 215 0 0 chr3 32229430 32229523 -195295055 - L1MEc LINE L1 -3896 2748 2656 1747 217 303 6 chr3 32229537 32230316 -195294262 - L1MC4 LINE L1 -206 7836 6827 1180 257 39 52 chr3 32230406 32231027 -195293551 - L1MEc LINE L1 -4577 2248 1485 662 313 80 9 chr3 32231123 32231462 -195293116 - L1MEc LINE L1 -5935 890 528 264 304 10 20 chr3 32231562 32231664 -195292914 - L2 LINE L2 -151 3162 3062 239 323 57 32 chr3 32231738 32231862 -195292716 - L2 LINE L2 -191 3081 2955 873 194 12 12 chr3 32231898 32232068 -195292510 - AluJb SINE Alu -23 289 120 255 321 45 27 chr3 32232208 32232320 -195292258 - L2 LINE L2 -486 2828 2715 1861 154 10 3 chr3 32232496 32232789 -195291789 + AluJb SINE Alu 2 296 -16 184 135 162 0 chr3 32233167 32233204 -195291374 - L2 LINE L2 -8 3264 3222 1718 145 83 26 chr3 32233612 32233963 -195290615 + THE1C LTR MaLR 3 373 -2 1077 242 56 49 chr3 32234021 32234430 -195290148 + LTR16A1 LTR ERVL 13 424 -33 304 270 81 9 chr3 32234710 32234821 -195289757 - L2 LINE L2 -971 2343 2225 258 287 68 31 chr3 32235015 32235308 -195289270 + L1MC/D LINE L1 4309 4612 -1534 2126 119 7 3 chr3 32235367 32235669 -195288909 + AluSg SINE Alu 1 303 -7 282 261 116 0 chr3 32236145 32236283 -195288295 + L1MC/D LINE L1 5313 5466 -2342 610 336 89 42 chr3 32236462 32237248 -195287330 - L1M4 LINE L1 -1086 5060 4238 720 256 19 0 chr3 32237776 32237936 -195286642 - FRAM SINE Alu -3 163 1 316 324 64 20 chr3 32238000 32238204 -195286374 - L1M4 LINE L1 -2368 3778 3566 252 0 0 0 chr3 32240533 32240561 -195284017 + (T)n Simple_repeat Simple_repeat 1 28 0 339 246 47 76 chr3 32241109 32241280 -195283298 - MIR SINE MIR -12 250 85 238 214 43 29 chr3 32241372 32241442 -195283136 + MLT1J1 LTR MaLR 71 141 -305 888 232 16 5 chr3 32241471 32241661 -195282917 - MER58A DNA MER1_type -9 215 24 1221 183 14 5 chr3 32241672 32241885 -195282693 + MER8 DNA MER2_type 4 218 -21 214 339 0 0 chr3 32242026 32242088 -195282490 + L2 LINE L2 2684 2745 -569 232 226 38 0 chr3 32243015 32243068 -195281510 + GA-rich Low_complexity Low_complexity 2 56 0 * 241 276 23 0 chr3 32243052 32243139 -195281439 - L1ME4a LINE L1 -68 6053 5965 302 330 20 0 chr3 32243342 32243442 -195281136 - MIR SINE MIR -142 120 19 682 250 119 6 chr3 32243467 32243627 -195280951 - MER5B DNA MER1_type 0 178 1 2658 121 18 20 chr3 32243994 32244439 -195280139 - MER65A LTR ERV1 0 445 2 24 32 0 0 chr3 32245003 32245034 -195279544 + AT_rich Low_complexity Low_complexity 1 31 0 1354 221 132 10 chr3 32245275 32245677 -195278901 + MLT1C LTR MaLR 17 467 0 25 51 0 0 chr3 32245967 32246006 -195278572 + AT_rich Low_complexity Low_complexity 1 39 0 654 275 11 19 chr3 32249294 32249498 -195275080 - MIR SINE MIR -32 230 31 435 199 44 44 chr3 32249557 32249738 -195274840 - HAL1 LINE L1 -1457 1050 870 411 266 98 14 chr3 32249741 32249884 -195274694 + MER5B DNA MER1_type 5 159 -19 252 207 0 69 chr3 32249893 32249951 -195274627 - HAL1 LINE L1 -1658 849 796 * 1941 231 95 58 chr3 32249948 32250760 -195273818 + L1M4 LINE L1 3513 4354 -1792 1684 299 81 16 chr3 32250747 32251435 -195273143 - HAL1 LINE L1 -1697 810 78 * 431 298 8 8 chr3 32251867 32251991 -195272587 - L2 LINE L2 -9 3304 3181 1664 163 59 17 chr3 32252671 32252960 -195271618 + AluJo SINE Alu 1 301 -11 4116 162 18 42 chr3 32253136 32254007 -195270571 - L1MB8 LINE L1 0 6178 5329 3066 230 11 15 chr3 32254008 32254821 -195269757 - L1MB8 LINE L1 -1071 5075 4266 652 269 28 0 chr3 32254844 32255026 -195269552 - L1ME4a LINE L1 -392 5770 5584 2327 92 0 3 chr3 32256957 32257262 -195267316 + AluSc SINE Alu 1 304 -5 917 255 33 0 chr3 32257998 32258210 -195266368 + MER20 DNA MER1_type 1 219 0 1580 159 85 0 chr3 32258572 32258723 -195265855 - AluSx SINE Alu -5 307 170 279 0 0 0 chr3 32258723 32258754 -195265824 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1580 159 85 0 chr3 32258754 32258885 -195265693 - AluSx SINE Alu -142 170 1 627 60 24 0 chr3 32261687 32261811 -195262767 - AluSc SINE Alu 0 319 194 199 343 103 29 chr3 32261933 32262108 -195262470 + MIR SINE MIR 75 262 0 873 152 0 51 chr3 32262557 32262715 -195261863 + FRAM SINE Alu 13 162 -14 1256 250 114 45 chr3 32263169 32263642 -195260936 - MLT1H1 LTR MaLR -9 546 47 419 309 44 0 chr3 32264164 32264300 -195260278 + L2 LINE L2 2611 2752 -562 2824 219 16 19 chr3 32264322 32265006 -195259572 - L1MA9 LINE L1 -38 6274 5593 429 198 91 8 chr3 32265006 32265127 -195259451 + L1M2 LINE L1 4321 4451 -1695 1090 180 72 0 chr3 32265128 32265350 -195259228 - Tigger5 DNA MER2_type -1 2322 2085 388 186 0 0 chr3 32265371 32265430 -195259148 - Tigger5 DNA MER2_type -2261 62 4 4045 159 33 36 chr3 32265431 32266617 -195257961 + L1M2 LINE L1 4448 5632 -680 323 226 119 0 chr3 32266619 32266703 -195257875 + L2 LINE L2 2749 2842 -472 476 223 78 10 chr3 32266705 32266808 -195257770 - L2 LINE L2 0 3313 3204 1252 242 89 28 chr3 32266815 32267240 -195257338 + L2 LINE L2 2859 3309 -4 37555 80 10 19 chr3 32267286 32273444 -195251134 + L1PA6 LINE L1 55 6151 -3 2134 144 62 35 chr3 32274167 32274590 -195249988 + Tigger2a DNA MER2_type 1 434 0 1089 214 13 66 chr3 32274676 32274759 -195249819 + MER58B DNA MER1_type 39 125 -2295 2233 113 7 7 chr3 32274759 32275068 -195249510 - AluSx SINE Alu -3 309 1 1089 214 13 66 chr3 32275068 32275206 -195249372 + MER58B DNA MER1_type 125 241 -2179 2383 48 41 0 chr3 32275206 32275497 -195249081 + AluY SINE Alu 1 303 -8 1089 214 13 66 chr3 32275497 32275591 -195248987 + MER58B DNA MER1_type 241 338 -3 190 384 26 47 chr3 32275604 32275794 -195248784 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr3 32276474 32276496 -195248082 + AT_rich Low_complexity Low_complexity 1 22 0 2264 78 11 0 chr3 32276545 32276829 -195247749 - AluY SINE Alu -17 294 8 4546 169 15 36 chr3 32276878 32277269 -195247309 - L1MA7 LINE L1 -64 6227 5829 2250 128 0 0 chr3 32277269 32277581 -195246997 - AluSx SINE Alu 0 312 1 4546 169 15 36 chr3 32277581 32278109 -195246469 - L1MA7 LINE L1 -462 5829 5327 1155 219 27 19 chr3 32278105 32278471 -195246107 - L1MDb LINE L1 -3966 2440 2072 * 582 252 14 23 chr3 32278486 32278700 -195245878 - L1MDb LINE L1 -4385 2021 1810 * 6395 211 30 33 chr3 32278681 32280303 -195244275 - L1MDb LINE L1 -4799 1607 6 1967 218 15 17 chr3 32280354 32280822 -195243756 + MLT1C LTR MaLR 1 467 0 304 293 0 13 chr3 32281428 32281503 -195243075 + MIR3 SINE MIR 111 184 -24 1035 206 60 0 chr3 32281783 32282074 -195242504 - MER33 DNA MER1_type 0 363 1 1603 182 26 3 chr3 32282332 32282634 -195241944 - AluJb SINE Alu -3 309 1 248 339 68 70 chr3 32282759 32283214 -195241364 + L2 LINE L2 2305 2758 -556 370 171 137 0 chr3 32283279 32283372 -195241206 - MER5A DNA MER1_type -77 112 4 494 308 8 8 chr3 32284116 32284246 -195240332 - L2 LINE L2 -7 3265 3136 231 36 0 0 chr3 32284276 32284304 -195240274 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1597 230 49 11 chr3 32285027 32285771 -195238807 + MER99 DNA DNA 2 828 0 338 185 19 19 chr3 32287814 32287922 -195236656 + GA-rich Low_complexity Low_complexity 1 108 0 532 279 64 68 chr3 32288432 32288843 -195235735 + LTR16C LTR ERVL 2 491 0 22 35 0 0 chr3 32290379 32290408 -195234170 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 32291309 32291331 -195233247 + AT_rich Low_complexity Low_complexity 1 22 0 591 169 203 6 chr3 32291812 32291965 -195232613 + MER5A DNA MER1_type 1 188 -1 297 346 126 18 chr3 32292506 32292847 -195231731 - L2 LINE L2 -446 2868 2491 354 342 142 0 chr3 32292853 32293043 -195231535 - L3 LINE CR1 -283 1294 1078 275 346 85 7 chr3 32293100 32293253 -195231325 - MIR SINE MIR -48 214 50 1484 48 0 53 chr3 32293957 32294164 -195230414 - L1PA5 LINE L1 -1 6153 5958 390 296 0 0 chr3 32294804 32294902 -195229676 - MER5A DNA MER1_type -83 106 9 262 300 24 123 chr3 32295589 32295759 -195228819 - L3 LINE CR1 -434 1143 991 385 341 45 31 chr3 32295792 32296082 -195228496 - L2 LINE L2 -831 2483 2190 21 36 0 0 chr3 32296707 32296735 -195227843 + AT_rich Low_complexity Low_complexity 1 28 0 808 358 70 39 chr3 32298075 32298799 -195225779 + L2 LINE L2 2511 3244 -28 276 170 0 0 chr3 32299256 32299309 -195225269 + CT-rich Low_complexity Low_complexity 1 53 0 2051 109 4 0 chr3 32300836 32301111 -195223467 + AluSx SINE Alu 1 276 -36 486 0 0 0 chr3 32301134 32301188 -195223390 + (TA)n Simple_repeat Simple_repeat 2 55 0 350 310 9 17 chr3 32301188 32301304 -195223274 - MER5B DNA MER1_type -61 117 3 916 233 46 120 chr3 32303487 32303903 -195220675 + MLT1C LTR MaLR 6 467 0 213 266 72 78 chr3 32304158 32304294 -195220284 + MIR3 SINE MIR 41 177 -31 891 185 60 15 chr3 32304742 32304942 -195219636 - MER3 DNA MER1_type 0 209 1 525 188 211 0 chr3 32304952 32305085 -195219493 - MER5A DNA MER1_type -21 168 8 2272 102 7 3 chr3 32305266 32305600 -195218978 + AluSq SINE Alu 1 335 0 1288 181 0 13 chr3 32305683 32305909 -195218669 - MER58A DNA MER1_type 0 224 2 199 344 58 39 chr3 32306230 32306384 -195218194 - MIR3 SINE MIR -18 190 34 21 36 0 0 chr3 32306687 32306715 -195217863 + AT_rich Low_complexity Low_complexity 1 28 0 325 258 89 61 chr3 32307036 32307200 -195217378 - MIR SINE MIR -56 152 19 232 257 95 0 chr3 32307869 32307943 -195216635 - L1MC/D LINE L1 -891 5442 5362 358 297 72 34 chr3 32308025 32308443 -195216135 - L1MC/D LINE L1 -915 5231 4798 583 258 24 57 chr3 32310123 32310332 -195214246 + LTR67 LTR ERVL 356 557 0 233 253 111 95 chr3 32310856 32311046 -195213532 - L1ME3A LINE L1 -15 6089 5897 1129 285 98 25 chr3 32311099 32311697 -195212881 - L1ME3A LINE L1 -206 5898 5275 22 94 0 0 chr3 32312085 32312149 -195212429 + AT_rich Low_complexity Low_complexity 1 64 0 428 301 44 40 chr3 32312767 32312993 -195211585 + L1ME4a LINE L1 5598 5824 -297 180 0 0 0 chr3 32313072 32313092 -195211486 + (A)n Simple_repeat Simple_repeat 1 20 0 1010 213 23 14 chr3 32313709 32313925 -195210653 - MER20 DNA MER1_type -1 218 1 300 266 0 0 chr3 32314238 32314317 -195210261 + L1ME4a LINE L1 6042 6120 -1 295 238 32 0 chr3 32315480 32315543 -195209035 + MER81 DNA DNA 29 93 -21 304 297 22 0 chr3 32316291 32316382 -195208196 + L2 LINE L2 2967 3059 -213 242 252 118 82 chr3 32316434 32316536 -195208042 + L2 LINE L2 3172 3282 -31 1441 241 84 53 chr3 32316536 32317060 -195207518 + MLT1F LTR MaLR 1 540 -2 242 252 118 82 chr3 32317060 32317092 -195207486 + L2 LINE L2 3282 3311 -2 1263 233 49 56 chr3 32317395 32317786 -195206792 - LTR16A LTR ERVL -8 442 55 23 33 0 0 chr3 32318038 32318068 -195206510 + AT_rich Low_complexity Low_complexity 1 30 0 1755 204 105 4 chr3 32318994 32319451 -195205127 + L1M4 LINE L1 4639 5141 -1005 302 167 0 15 chr3 32320999 32321065 -195203513 + (TA)n Simple_repeat Simple_repeat 2 66 0 48 32 0 0 chr3 32321340 32321402 -195203176 + AT_rich Low_complexity Low_complexity 1 62 0 29 28 0 0 chr3 32321713 32321749 -195202829 + AT_rich Low_complexity Low_complexity 1 36 0 229 314 111 33 chr3 32322065 32322460 -195202118 - L1P LINE L1 -842 5304 4879 588 326 105 25 chr3 32322490 32322566 -195202012 - L1ME3A LINE L1 -1302 4778 4710 1849 163 48 21 chr3 32322566 32322903 -195201675 + MER7A DNA MER2_type 2 345 -1 588 326 105 25 chr3 32322903 32323346 -195201232 - L1ME3A LINE L1 -1370 4710 4217 594 325 89 25 chr3 32323355 32324260 -195200318 - L1ME3A LINE L1 -2983 3097 2135 322 182 8 149 chr3 32324286 32324407 -195200171 - L1ME3A LINE L1 -5955 115 12 246 244 0 0 chr3 32325079 32325124 -195199454 + L2 LINE L2 3197 3241 -31 1629 137 152 22 chr3 32325481 32325796 -195198782 + THE1B LTR MaLR 1 356 -8 1376 80 11 0 chr3 32325796 32325983 -195198595 + THE1B-int LTR MaLR 417 605 -975 837 71 0 0 chr3 32326010 32326123 -195198455 + THE1B-int LTR MaLR 1468 1580 0 1758 141 68 89 chr3 32326125 32326285 -195198293 + THE1B LTR MaLR 3 165 -199 2124 125 10 0 chr3 32326285 32326589 -195197989 + AluSp SINE Alu 3 309 -4 1758 141 68 89 chr3 32326589 32326798 -195197780 + THE1B LTR MaLR 165 364 0 424 294 124 38 chr3 32327103 32327450 -195197128 - L1MEd LINE L1 -4086 2224 1848 705 288 78 51 chr3 32327706 32328237 -195196341 - L1MEd LINE L1 -4687 1623 1108 1910 155 0 17 chr3 32328237 32328534 -195196044 - AluJb SINE Alu -20 292 1 705 288 78 51 chr3 32328534 32329050 -195195528 - L1MEd LINE L1 -5202 1108 521 6128 137 14 12 chr3 32329474 32330829 -195193749 - L1MA5A LINE L1 -53 6886 5529 8853 220 41 18 chr3 32330829 32332866 -195191712 - L1MA5A LINE L1 -1920 4868 2879 1998 138 14 0 chr3 32332866 32333149 -195191429 - AluSx SINE Alu -25 287 1 8853 220 41 18 chr3 32333149 32335850 -195188728 - L1MA5A LINE L1 -3909 2879 7 434 242 66 91 chr3 32335862 32336347 -195188231 - L1MEd LINE L1 -3019 3110 2638 2033 87 19 72 chr3 32336361 32336682 -195187896 - AluSc SINE Alu -5 304 1 2492 68 7 0 chr3 32336952 32337261 -195187317 - AluY SINE Alu 0 311 1 311 275 14 14 chr3 32337284 32337422 -195187156 - L1MEd LINE L1 -3858 2271 2134 219 253 0 24 chr3 32337436 32337519 -195187059 + T-rich Low_complexity Low_complexity 1 81 0 635 268 51 78 chr3 32337889 32338600 -195185978 - L1MEd LINE L1 -4655 1655 943 520 237 20 66 chr3 32339009 32339161 -195185417 + MER69 DNA AcHobo 2 146 -2380 674 306 10 0 chr3 32339175 32339374 -195185204 - L1ME LINE L1 -481 5681 5481 354 326 53 0 chr3 32339384 32339479 -195185099 + MER69 DNA AcHobo 182 281 -2245 * 3449 213 57 37 chr3 32339475 32339561 -195185017 + MER69 DNA AcHobo 1457 1540 -986 1327 192 39 103 chr3 32339561 32339951 -195184627 + MLT1A1 LTR MaLR 1 365 0 3449 213 57 37 chr3 32339951 32340549 -195184029 + MER69 DNA AcHobo 1540 2174 -352 1628 144 7 64 chr3 32340549 32340892 -195183686 + AluJb SINE Alu 1 326 0 3449 213 57 37 chr3 32340892 32341253 -195183325 + MER69 DNA AcHobo 2174 2526 0 1284 151 26 8 chr3 32341669 32342031 -195182547 + Tigger1 DNA MER2_type 2 2417 -1 314 60 0 20 chr3 32342520 32342570 -195182008 + (CA)n Simple_repeat Simple_repeat 2 50 0 480 77 0 0 chr3 32342953 32343018 -195181560 + (TA)n Simple_repeat Simple_repeat 2 66 0 2042 108 7 0 chr3 32344388 32344668 -195179910 + AluSc SINE Alu 1 333 0 272 59 20 20 chr3 32344668 32344719 -195179859 + (CAAA)n Simple_repeat Simple_repeat 2 108 0 24 77 0 0 chr3 32345402 32345454 -195179124 + AT_rich Low_complexity Low_complexity 1 52 0 1327 137 26 13 chr3 32347010 32347237 -195177341 + MER30 DNA MER1_type 1 230 0 331 387 6 12 chr3 32347904 32348072 -195176506 + L2 LINE L2 2108 2274 -1040 210 37 0 0 chr3 32348405 32348432 -195176146 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 801 317 75 26 chr3 32348485 32348980 -195175598 + ERVL LTR ERVL 4458 4976 -788 221 386 7 14 chr3 32348994 32349139 -195175439 - L2 LINE L2 -1063 2251 2108 259 313 0 0 chr3 32349409 32349476 -195175102 + ERVL LTR ERVL 5215 5281 -483 181 203 0 34 chr3 32349598 32349657 -195174921 + (TA)n Simple_repeat Simple_repeat 2 58 0 428 277 5 68 chr3 32350286 32350492 -195174086 + LTR67 LTR ERVL 365 557 0 195 290 16 48 chr3 32351636 32351698 -195172880 + MIR SINE MIR 14 73 -189 2016 149 25 71 chr3 32351698 32352144 -195172434 - MLT1B LTR MaLR 0 467 12 706 322 25 9 chr3 32354516 32354836 -195169742 - HAL1b LINE L1 -781 567 243 21 36 0 0 chr3 32354874 32354902 -195169676 + AT_rich Low_complexity Low_complexity 1 28 0 2019 143 3 3 chr3 32354902 32355202 -195169376 + AluSx SINE Alu 1 300 -12 421 183 151 0 chr3 32355202 32355295 -195169283 - L1MC3 LINE L1 -490 7575 7469 233 315 22 11 chr3 32355296 32355385 -195169193 - MLT1F1 LTR MaLR -442 125 36 3183 188 72 95 chr3 32355386 32356885 -195167693 - L1MC3 LINE L1 -684 7381 6060 776 209 0 7 chr3 32356885 32357057 -195167521 - AluJb SINE Alu 0 306 136 3124 200 66 10 chr3 32357057 32358257 -195166321 - L1MC3 LINE L1 -743 5683 4798 384 88 0 0 chr3 32358260 32358317 -195166261 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 1560 159 43 0 chr3 32358318 32358575 -195166003 - AluJb SINE Alu -36 276 9 346 264 34 40 chr3 32358580 32358728 -195165850 - L1MC3 LINE L1 -1688 4738 4592 14285 94 9 0 chr3 32358771 32361598 -195162980 - L1PA8 LINE L1 0 6172 3325 3069 108 15 8 chr3 32361598 32362116 -195162462 + L1PA8 LINE L1 2793 3314 -2832 1395 234 34 29 chr3 32362127 32362571 -195162007 - L1MC3 LINE L1 -1836 4590 4145 5461 209 143 91 chr3 32362597 32365147 -195159431 - L1MC3 LINE L1 -3873 2734 6 219 69 0 0 chr3 32365453 32365482 -195159096 + (TTC)n Simple_repeat Simple_repeat 2 30 0 567 235 116 29 chr3 32367386 32367675 -195156903 + MER45B DNA AcHobo 55 449 -591 21 0 0 0 chr3 32367744 32367765 -195156813 + AT_rich Low_complexity Low_complexity 1 21 0 581 266 149 0 chr3 32368040 32368194 -195156384 - MER5A DNA MER1_type -6 183 7 768 316 75 36 chr3 32368200 32368314 -195156264 + MLT1L LTR MaLR 97 205 -410 2208 109 0 0 chr3 32368314 32368616 -195155962 + AluSg SINE Alu 1 302 -8 768 316 75 36 chr3 32368616 32368995 -195155583 + MLT1L LTR MaLR 205 609 -6 435 262 74 0 chr3 32369730 32369852 -195154726 - MER5B DNA MER1_type -3 175 45 890 210 142 30 chr3 32369858 32370196 -195154382 - L1MC4 LINE L1 0 8042 7667 379 241 43 29 chr3 32371181 32371358 -195153220 - MLT1F LTR MaLR 0 563 395 1110 151 0 78 chr3 32371436 32371654 -195152924 - AluSx SINE Alu -111 201 1 426 258 64 35 chr3 32371706 32371923 -195152655 - MLT1F LTR MaLR -321 234 4 489 127 25 0 chr3 32372145 32372224 -195152354 - AluS SINE Alu -232 81 1 501 220 48 37 chr3 32372276 32372493 -195152085 - MLT1F LTR MaLR -321 234 4 1851 188 46 28 chr3 32373132 32373521 -195151057 - MSTD LTR MaLR 0 396 1 1619 164 27 27 chr3 32424879 32425177 -195099401 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr3 32425291 32425313 -195099265 + AT_rich Low_complexity Low_complexity 1 22 0 669 268 34 19 chr3 32425422 32425627 -195098951 + MIR SINE MIR 6 213 -49 225 0 0 0 chr3 32426200 32426225 -195098353 + (A)n Simple_repeat Simple_repeat 1 25 0 248 352 39 31 chr3 32426283 32426411 -195098167 - L2 LINE L2 -6 3307 3179 406 295 147 10 chr3 32428770 32428963 -195095615 + MIR SINE MIR 16 231 -31 567 224 160 0 chr3 32429101 32429257 -195095321 + MER5A DNA MER1_type 9 189 0 333 0 0 0 chr3 32429358 32429395 -195095183 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 259 17 0 chr3 32429453 32429511 -195095067 + L2 LINE L2 3209 3267 -5 878 254 168 0 chr3 32430831 32431099 -195093479 - MLT1J1 LTR MaLR -133 313 1 193 125 31 0 chr3 32431304 32431336 -195093242 + MIR SINE MIR 163 195 -67 890 250 5 5 chr3 32431624 32431824 -195092754 + MIR SINE MIR 61 260 -2 370 271 181 7 chr3 32432453 32432597 -195091981 - MER5A DNA MER1_type -6 183 15 * 420 220 20 20 chr3 32432589 32432689 -195091889 + MER5A DNA MER1_type 90 189 0 230 304 0 25 chr3 32433060 32433139 -195091439 + MER81 DNA DNA 1 77 -37 471 271 199 0 chr3 32433170 32433321 -195091257 - MER5A DNA MER1_type 0 189 9 1797 161 7 3 chr3 32433533 32433818 -195090760 - AluJb SINE Alu -26 286 1 1396 140 133 36 chr3 32434478 32434786 -195089792 - MER44D DNA MER2_type -1 608 1 1532 176 107 3 chr3 32434875 32435194 -195089384 + MER82 DNA MER2_type 14 365 -288 521 246 0 29 chr3 32435363 32435384 -195089194 + MER58B DNA MER1_type 178 198 -2222 828 198 173 64 chr3 32435384 32435713 -195088865 - MLT1A1 LTR MaLR 0 365 1 521 246 0 29 chr3 32435713 32435829 -195088749 + MER58B DNA MER1_type 198 311 -30 412 189 3 9 chr3 32435821 32435910 -195088668 - MLT1I LTR MaLR -247 192 98 * 583 221 179 0 chr3 32436195 32436335 -195088243 - MER5A DNA MER1_type -21 168 4 1820 169 27 3 chr3 32436610 32436906 -195087672 + AluJb SINE Alu 1 303 -9 1870 190 38 5 chr3 32437834 32438256 -195086322 + L1MB7 LINE L1 5509 5944 -240 244 341 7 7 chr3 32438664 32438799 -195085779 - L1MEc LINE L1 -6181 215 81 1116 285 44 25 chr3 32439940 32440491 -195084087 + L1ME3A LINE L1 5402 5962 -208 324 291 148 22 chr3 32440548 32440730 -195083848 + L1ME3A LINE L1 5961 6165 -5 420 325 41 0 chr3 32440809 32440978 -195083600 - MLT1L LTR MaLR -8 607 432 1503 183 7 48 chr3 32441855 32442145 -195082433 - AluJo SINE Alu -14 298 21 2222 180 5 9 chr3 32442256 32442679 -195081899 - L1MC3 LINE L1 -980 6805 6385 2293 107 3 0 chr3 32442701 32442999 -195081579 - AluSp SINE Alu -14 299 1 555 254 112 83 chr3 32446570 32446909 -195077669 + LTR16A1 LTR ERVL 107 455 -2 240 173 39 19 chr3 32447034 32447138 -195077440 + CT-rich Low_complexity Low_complexity 3 108 0 1228 159 94 52 chr3 32447634 32447967 -195076611 + MER47B DNA MER2_type 1 418 0 838 244 6 0 chr3 32448640 32448820 -195075758 - MER5A DNA MER1_type 0 189 9 326 254 176 59 chr3 32448882 32449189 -195075389 - L1M2 LINE L1 -5575 1274 932 201 74 0 0 chr3 32450234 32450261 -195074317 + (TG)n Simple_repeat Simple_repeat 1 27 0 183 42 0 0 chr3 32450478 32450502 -195074076 + (TG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr3 32450676 32450698 -195073880 + AT_rich Low_complexity Low_complexity 1 22 0 294 303 40 30 chr3 32452320 32452419 -195072159 - L2 LINE L2 0 3272 3173 207 0 0 0 chr3 32452442 32452465 -195072113 + (TA)n Simple_repeat Simple_repeat 2 24 0 535 330 12 6 chr3 32452555 32452728 -195071850 + MIR SINE MIR 28 201 -61 * 691 298 76 96 chr3 32452715 32453547 -195071031 + L2 LINE L2 1666 2480 -834 362 349 7 7 chr3 32454700 32454849 -195069729 + CT-rich Low_complexity Low_complexity 3 151 0 349 302 138 16 chr3 32455278 32455467 -195069111 - MIR SINE MIR -1 261 50 766 249 88 9 chr3 32456247 32456464 -195068114 + L2 LINE L2 2610 2843 -471 448 264 99 22 chr3 32456713 32456895 -195067683 - L2 LINE L2 0 3313 3118 2179 209 118 27 chr3 32457668 32458195 -195066383 - MLT1E2 LTR MaLR 0 626 52 355 243 133 128 chr3 32458515 32458852 -195065726 - MER102b DNA MER1_type -2 339 1 271 342 9 18 chr3 32460367 32460504 -195064074 + MIR SINE MIR 2 135 -73 2215 99 0 3 chr3 32461014 32461306 -195063272 - AluSg SINE Alu -17 293 3 488 307 13 7 chr3 32461676 32461826 -195062752 - MIR3 SINE MIR -28 180 30 189 274 24 83 chr3 32461823 32461907 -195062671 - L2 LINE L2 -9 3263 3185 * 225 290 123 51 chr3 32461966 32462104 -195062474 - MIR3 SINE MIR -1 207 60 227 296 195 10 chr3 32462182 32462376 -195062202 + MIR SINE MIR 24 252 -10 188 402 62 0 chr3 32463885 32463997 -195060581 + L2 LINE L2 3143 3261 -11 382 305 94 42 chr3 32464010 32464239 -195060339 - MIR SINE MIR -3 259 10 2366 86 3 0 chr3 32465623 32465924 -195058654 + AluY SINE Alu 1 302 -9 1493 203 22 7 chr3 32466226 32466502 -195058076 + AluJb SINE Alu 1 280 -32 245 304 35 35 chr3 32467403 32467518 -195057060 + MIR SINE MIR 27 141 -121 336 247 0 0 chr3 32468153 32468234 -195056344 + MER113 DNA MER1_type? 388 468 -53 1999 149 120 16 chr3 32468260 32468636 -195055942 + MSTB LTR MaLR 6 420 -6 396 207 193 22 chr3 32470458 32470593 -195053985 + MER5A DNA MER1_type 1 158 -31 771 189 15 15 chr3 32471734 32471866 -195052712 + FLAM_C SINE Alu 2 133 0 274 346 58 0 chr3 32472197 32472301 -195052277 + L2 LINE L2 3163 3272 0 201 158 0 0 chr3 32472515 32472553 -195052025 + T-rich Low_complexity Low_complexity 1 38 0 235 150 67 0 chr3 32473231 32473291 -195051287 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 247 310 4 27 chr3 32473627 32473766 -195050812 + CT-rich Low_complexity Low_complexity 1 218 0 2145 227 150 52 chr3 32474410 32475162 -195049416 - LTR1B LTR ERV1 0 826 1 917 187 124 42 chr3 32475167 32475408 -195049170 - LTR48B LTR ERV1 -1 643 383 1197 233 134 37 chr3 32475409 32475842 -195048736 - LTR48 LTR ERV1 -312 475 1 228 224 0 0 chr3 32475906 32475955 -195048623 + MIR SINE MIR 106 154 -108 783 303 72 27 chr3 32476431 32476834 -195047744 - LTR16A LTR ERVL -14 436 16 899 230 88 0 chr3 32477507 32477746 -195046832 + MER63 DNA MER1_type 796 1055 -5 297 0 0 0 chr3 32477895 32477928 -195046650 + (T)n Simple_repeat Simple_repeat 1 33 0 1903 220 112 109 chr3 32478494 32479318 -195045260 - LTR1B LTR ERV1 0 826 1 337 333 44 28 chr3 32479454 32479634 -195044944 - MIR SINE MIR -38 224 42 253 246 66 0 chr3 32480862 32480923 -195043655 - L2 LINE L2 -12 3301 3237 2516 74 0 0 chr3 32481559 32481868 -195042710 - AluY SINE Alu -2 309 1 1047 242 33 0 chr3 32481905 32482116 -195042462 - MER20 DNA MER1_type 0 219 2 1735 144 7 14 chr3 32482125 32482427 -195042151 + MER1B DNA MER1_type 1 328 -1 654 199 31 25 chr3 32482444 32482605 -195041973 - MIR SINE MIR -19 243 82 545 301 67 14 chr3 32485170 32485379 -195039199 + MIR SINE MIR 25 244 -18 351 0 0 0 chr3 32486246 32486285 -195038293 + (TC)n Simple_repeat Simple_repeat 2 40 0 887 158 94 64 chr3 32486658 32486892 -195037686 + L1MB8 LINE L1 5936 6176 -2 2260 102 0 10 chr3 32486901 32487206 -195037372 + AluY SINE Alu 1 302 -9 641 280 26 32 chr3 32488340 32488529 -195036049 + MER5A DNA MER1_type 1 188 -1 818 206 19 7 chr3 32488562 32488717 -195035861 - MER20 DNA MER1_type -62 157 1 209 261 58 72 chr3 32488722 32488860 -195035718 - MER5A DNA MER1_type -37 152 17 484 319 84 33 chr3 32489005 32489278 -195035300 - L2 LINE L2 -205 3108 2822 2461 59 3 13 chr3 32489613 32489918 -195034660 - AluY SINE Alu -9 302 1 181 94 0 62 chr3 32489921 32489953 -195034625 - MER5A DNA MER1_type -116 73 44 814 164 0 97 chr3 32491262 32491469 -195033109 - MER53 DNA DNA 0 189 3 1326 193 57 15 chr3 32491508 32491619 -195032959 + AluJo SINE Alu 7 112 -200 185 0 40 0 chr3 32491619 32491644 -195032934 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1326 193 57 15 chr3 32491644 32491797 -195032781 + AluJo SINE Alu 112 282 -30 2132 106 0 0 chr3 32492660 32492935 -195031643 + AluSx SINE Alu 38 312 0 1242 204 104 26 chr3 32493583 32493891 -195030687 - MER58B DNA MER1_type -5 336 5 194 171 29 0 chr3 32494658 32494693 -195029885 - MIR SINE MIR -142 120 85 671 170 220 6 chr3 32494753 32494912 -195029666 + Tigger3(Golem) DNA MER2_type 2837 3029 0 1425 207 66 0 chr3 32494944 32495248 -195029330 - MER2 DNA MER2_type -21 324 1 1823 207 91 42 chr3 32495280 32495777 -195028801 - Charlie1b DNA MER1_type -2 521 1 1055 243 49 4 chr3 32496261 32496508 -195028070 + Tigger7 DNA MER2_type 1 258 -292 589 137 21 11 chr3 32496515 32496610 -195027968 + Tigger7 DNA MER2_type 2391 2486 -1 195 294 155 49 chr3 32497648 32497893 -195026685 + L2 LINE L2 1372 1642 -1672 312 194 16 0 chr3 32498615 32498677 -195025901 + MER58B DNA MER1_type 275 337 -4 447 269 223 0 chr3 32498689 32498819 -195025759 - MER5A DNA MER1_type -24 165 7 465 269 36 8 chr3 32499065 32499247 -195025331 + MER8 DNA MER2_type 6 239 0 595 268 106 0 chr3 32499256 32499435 -195025143 - MIR SINE MIR -44 218 21 3756 146 42 29 chr3 32500573 32501291 -195023287 - LTR8A LTR ERV1 0 727 1 2888 126 47 45 chr3 32502333 32502943 -195021635 + MER4B LTR ERV1 1 779 0 287 287 63 14 chr3 32503484 32503627 -195020951 - L1ME LINE L1 -284 5820 5671 227 306 76 7 chr3 32503740 32503884 -195020694 - L1ME LINE L1 -630 5517 5364 552 277 196 8 chr3 32503929 32504428 -195020150 - L1ME LINE L1 -847 5282 4690 1511 197 95 0 chr3 32504619 32504944 -195019634 - L1MA3 LINE L1 -11 6294 5939 250 266 139 25 chr3 32504967 32505125 -195019453 - L1ME LINE L1 -2022 4107 3932 2371 284 88 42 chr3 32505185 32506262 -195018316 + L2 LINE L2 1903 3041 -272 2293 166 31 5 chr3 32506262 32506679 -195017899 - MSTB1 LTR MaLR -4 428 1 2371 284 88 42 chr3 32506679 32506753 -195017825 + L2 LINE L2 3041 3110 -203 705 270 56 25 chr3 32506814 32507010 -195017568 - MER58A DNA MER1_type 0 224 23 255 226 0 0 chr3 32507186 32507248 -195017330 - L1ME LINE L1 -2659 3470 3409 406 262 137 64 chr3 32507321 32507729 -195016849 - L1ME LINE L1 -2868 3261 2824 1508 164 141 10 chr3 32507748 32508052 -195016526 - MER2 DNA MER2_type 0 345 2 244 135 0 0 chr3 32508092 32508129 -195016449 - L1ME LINE L1 -3382 2747 2711 305 319 84 31 chr3 32508325 32508551 -195016027 - L1ME LINE L1 -3659 2470 2233 21 36 0 0 chr3 32508651 32508679 -195015899 + AT_rich Low_complexity Low_complexity 1 28 0 550 293 35 6 chr3 32509272 32509446 -195015132 + MIR SINE MIR 84 262 0 2759 216 38 55 chr3 32509493 32510286 -195014292 - L1MC4a LINE L1 -23 7785 7007 309 275 28 9 chr3 32511255 32511364 -195013214 + HAL1 LINE L1 263 373 -2134 303 349 34 23 chr3 32511439 32511614 -195012964 + HAL1 LINE L1 493 669 -1838 310 224 158 29 chr3 32511944 32512190 -195012388 - L1M4 LINE L1 -3665 2481 2204 * 606 249 51 32 chr3 32512183 32512400 -195012178 - HAL1 LINE L1 -1540 967 747 981 170 47 52 chr3 32512406 32512618 -195011960 - MER20 DNA MER1_type -7 212 2 398 250 53 15 chr3 32512619 32512751 -195011827 - HAL1 LINE L1 -1753 754 618 22 56 0 0 chr3 32512754 32512790 -195011788 + AT_rich Low_complexity Low_complexity 1 36 0 294 286 128 95 chr3 32512799 32513016 -195011562 - L1ME LINE L1 -5241 878 670 2582 51 0 6 chr3 32513016 32513327 -195011251 + AluY SINE Alu 1 309 -2 294 286 128 95 chr3 32513327 32513411 -195011167 - L1ME LINE L1 -5449 670 590 652 189 8 8 chr3 32513411 32513538 -195011040 + FLAM_C SINE Alu 2 128 -5 294 286 128 95 chr3 32513538 32513774 -195010804 - L1ME LINE L1 -5529 590 322 254 189 0 0 chr3 32514243 32514296 -195010282 + HAL1 LINE L1 968 1020 -1487 449 209 191 36 chr3 32514658 32514827 -195009751 + Charlie1 DNA MER1_type 2502 2716 -45 1801 139 63 41 chr3 32514827 32515194 -195009384 + THE1C LTR MaLR 1 375 0 449 209 191 36 chr3 32515194 32515249 -195009329 + Charlie1 DNA MER1_type 2716 2761 0 687 292 155 22 chr3 32515261 32515583 -195008995 + HAL1 LINE L1 1206 1570 -937 464 270 146 24 chr3 32515615 32516108 -195008470 + HAL1 LINE L1 1826 2378 -129 1103 207 153 7 chr3 32516131 32516431 -195008147 - MER2 DNA MER2_type 0 344 1 391 247 234 53 chr3 32516707 32517011 -195007567 + MLT1L LTR MaLR 163 521 -94 351 0 0 0 chr3 32517241 32517280 -195007298 + (TG)n Simple_repeat Simple_repeat 2 40 0 358 342 30 35 chr3 32519108 32519339 -195005239 + L3 LINE CR1 1345 1574 -3 1631 187 32 0 chr3 32520332 32520615 -195003963 - AluJb SINE Alu -15 297 6 266 267 89 11 chr3 32522124 32522278 -195002300 - MIR SINE MIR -1 261 43 366 21 0 0 chr3 32522300 32522348 -195002230 - L1PA6 LINE L1 0 6154 6107 306 0 0 0 chr3 32523560 32523594 -195000984 + (TG)n Simple_repeat Simple_repeat 2 35 0 554 256 0 0 chr3 32524351 32524468 -195000110 + FLAM_C SINE Alu 1 117 -26 358 268 99 49 chr3 32524694 32524836 -194999742 + MIR SINE MIR 2 150 -112 523 288 42 67 chr3 32525182 32525422 -194999156 + MIR SINE MIR 19 252 -10 21 36 0 0 chr3 32525448 32525476 -194999102 + AT_rich Low_complexity Low_complexity 1 28 0 1670 182 14 24 chr3 32527412 32527709 -194996869 - AluJo SINE Alu -18 294 1 2940 156 26 11 chr3 32527995 32528528 -194996050 - L1PA16 LINE L1 -1 6165 5625 221 343 67 9 chr3 32528613 32528718 -194995860 - L2 LINE L2 0 3313 3203 244 298 42 10 chr3 32529043 32529139 -194995439 - MIR SINE MIR -67 141 54 630 233 8 0 chr3 32529221 32529341 -194995237 - MER5A DNA MER1_type -1 188 68 294 309 27 9 chr3 32529243 32529353 -194995225 + MER5A DNA MER1_type 36 147 -42 * 314 104 0 0 chr3 32529500 32529548 -194995030 - Alu SINE Alu -4 297 250 3057 183 48 42 chr3 32529569 32530146 -194994432 + L1MB4 LINE L1 5454 6038 -142 2227 98 0 0 chr3 32530146 32530443 -194994135 - AluY SINE Alu -14 297 1 3057 183 48 42 chr3 32530443 32530587 -194993991 + L1MB4 LINE L1 6038 6180 0 277 257 79 21 chr3 32531667 32531807 -194992771 + MER103 DNA DNA 18 165 -1 42 57 0 0 chr3 32532192 32532262 -194992316 + AT_rich Low_complexity Low_complexity 1 70 0 315 276 95 82 chr3 32532637 32532880 -194991698 - MLT1J LTR MaLR -156 355 110 523 265 114 12 chr3 32532893 32532990 -194991588 + MER5A DNA MER1_type 5 91 -98 885 221 17 0 chr3 32532990 32533162 -194991416 - MER45A DNA AcHobo -2 176 2 523 265 114 12 chr3 32533162 32533230 -194991348 + MER5A DNA MER1_type 91 187 -2 21 0 0 0 chr3 32533904 32533925 -194990653 + AT_rich Low_complexity Low_complexity 1 21 0 681 211 0 0 chr3 32535295 32535423 -194989155 - FLAM_A SINE Alu -4 129 2 215 115 154 19 chr3 32535718 32535770 -194988808 - MIR SINE MIR -8 254 196 548 114 0 0 chr3 32535784 32535863 -194988715 - MADE1 DNA Mariner -1 79 1 239 167 50 0 chr3 32535870 32535930 -194988648 + (TA)n Simple_repeat Simple_repeat 1 63 0 356 338 127 0 chr3 32535953 32536095 -194988483 - MIR SINE MIR -57 205 46 359 258 75 13 chr3 32536376 32536535 -194988043 + Charlie2 DNA MER1_type 394 562 -2220 1033 251 86 19 chr3 32536590 32536952 -194987626 + Charlie2a DNA MER1_type 1464 1849 -1013 26 30 0 0 chr3 32537005 32537038 -194987540 + AT_rich Low_complexity Low_complexity 1 33 0 492 249 90 55 chr3 32537151 32537496 -194987082 + Charlie2a DNA MER1_type 2487 2843 -19 396 147 15 15 chr3 32538129 32538197 -194986381 - LTR16B LTR ERVL 0 464 397 6388 52 33 1 chr3 32538208 32539030 -194985548 + L1PA7 LINE L1 5304 6151 -3 355 296 9 9 chr3 32539376 32539484 -194985094 + MLT1L LTR MaLR 193 300 -315 2273 118 0 6 chr3 32540445 32540759 -194983819 + AluSx SINE Alu 1 312 0 308 261 14 0 chr3 32540946 32541015 -194983563 - L2 LINE L2 -1 3312 3243 665 251 56 11 chr3 32541090 32541269 -194983309 - MER5A DNA MER1_type -2 187 1 287 73 0 0 chr3 32542777 32542818 -194981760 - L2 LINE L2 0 3313 3273 188 190 155 35 chr3 32543620 32543678 -194980900 - MIR SINE MIR -190 72 8 942 292 71 37 chr3 32544031 32544466 -194980112 - MLT1J2 LTR MaLR 0 450 1 853 153 0 0 chr3 32545187 32545311 -194979267 + FLAM_C SINE Alu 1 124 -9 617 305 44 0 chr3 32545758 32545961 -194978617 + MIR SINE MIR 51 262 0 480 337 106 36 chr3 32545964 32546267 -194978311 + L3 LINE CR1 1247 1570 -7 2459 64 0 13 chr3 32546489 32546800 -194977778 - AluY SINE Alu -4 307 1 195 184 0 0 chr3 32546900 32546938 -194977640 + CT-rich Low_complexity Low_complexity 2 39 0 1608 184 75 0 chr3 32548014 32548334 -194976244 + MER2 DNA MER2_type 1 344 0 945 220 121 3 chr3 32548735 32549017 -194975561 - MER33 DNA MER1_type -4 320 6 943 261 108 16 chr3 32550134 32550556 -194974022 + L1ME3 LINE L1 5504 5983 -179 22 0 0 0 chr3 32550609 32550631 -194973947 + AT_rich Low_complexity Low_complexity 1 22 0 2955 213 121 34 chr3 32550715 32551064 -194973514 + L1MB7 LINE L1 5002 5319 -865 1953 121 14 0 chr3 32551064 32551344 -194973234 - AluSx SINE Alu -28 284 1 2955 213 121 34 chr3 32551344 32552092 -194972486 + L1MB7 LINE L1 5319 6175 -9 2073 103 17 27 chr3 32552118 32552418 -194972160 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr3 32552418 32552439 -194972139 + AT_rich Low_complexity Low_complexity 1 21 0 448 292 148 0 chr3 32552463 32552679 -194971899 + MIR SINE MIR 4 251 -11 2514 145 8 0 chr3 32552802 32553202 -194971376 + MER57A LTR ERV1 1 403 0 324 289 99 26 chr3 32554021 32554173 -194970405 - MIR3 SINE MIR -14 194 32 196 286 10 7 chr3 32555690 32555806 -194968772 + MIR SINE MIR 47 233 -29 675 250 54 50 chr3 32555894 32556154 -194968424 - MIR SINE MIR 0 262 2 212 189 0 0 chr3 32557003 32557040 -194967538 + T-rich Low_complexity Low_complexity 1 37 0 221 363 56 12 chr3 32557430 32557590 -194966988 - MIR3 SINE MIR -6 202 36 391 264 85 0 chr3 32557730 32557836 -194966742 + MER105 DNA DNA 84 198 -6 775 234 40 10 chr3 32557902 32558103 -194966475 + MER3 DNA MER1_type 3 209 0 363 311 169 14 chr3 32558249 32558468 -194966110 + MIR SINE MIR 5 257 -5 1454 198 3 45 chr3 32558878 32559191 -194965387 + AluJo SINE Alu 1 300 -12 23 54 0 0 chr3 32562637 32562674 -194961904 + AT_rich Low_complexity Low_complexity 1 37 0 248 253 53 53 chr3 32563070 32563165 -194961413 - L2 LINE L2 0 3272 3178 252 278 133 11 chr3 32564019 32564109 -194960469 + L2 LINE L2 3197 3297 -16 872 274 73 17 chr3 32564129 32564244 -194960334 - MIR SINE MIR -10 252 145 1289 255 0 13 chr3 32564244 32564550 -194960028 + AluJo SINE Alu 1 302 -10 872 274 73 17 chr3 32564550 32564668 -194959910 - MIR SINE MIR -117 145 6 22 35 0 0 chr3 32564741 32564770 -194959808 + AT_rich Low_complexity Low_complexity 1 29 0 204 311 189 9 chr3 32564960 32565066 -194959512 + L2 LINE L2 2908 3032 -240 331 176 54 14 chr3 32565244 32565318 -194959260 - MER91C DNA MER1_type -63 77 1 186 200 0 0 chr3 32565318 32565358 -194959220 + L2 LINE L2 3268 3307 -6 206 154 77 0 chr3 32565858 32565897 -194958681 - MER91 DNA MER1_type -108 82 41 370 264 67 72 chr3 32571244 32571437 -194953141 + Charlie8 DNA MER1_type 1 192 -2225 323 221 0 0 chr3 32571708 32571776 -194952802 - MER116 DNA Mariner 0 80 13 21 0 0 0 chr3 32571983 32572004 -194952574 + AT_rich Low_complexity Low_complexity 1 21 0 2208 159 45 37 chr3 32572071 32572495 -194952083 - L1MB4 LINE L1 -5 6175 5745 1623 148 0 4 chr3 32572495 32572745 -194951833 - AluSx SINE Alu -7 305 57 2208 159 45 37 chr3 32572745 32572805 -194951773 - L1MB4 LINE L1 -435 5745 5687 700 23 0 0 chr3 32672805 32672892 -194851686 + L1PA4 LINE L1 6066 6152 -3 5567 137 27 21 chr3 32672893 32674896 -194849682 - L1MA3 LINE L1 -150 6155 4143 6923 66 5 0 chr3 32674896 32676274 -194848304 + L1PA5 LINE L1 4768 6151 -3 283 128 12 47 chr3 32677802 32677888 -194846690 + (TA)n Simple_repeat Simple_repeat 1 83 0 2018 194 70 19 chr3 32677893 32678378 -194846200 - L1MA9 LINE L1 -95 6217 5708 24 0 0 0 chr3 32678967 32678991 -194845587 + AT_rich Low_complexity Low_complexity 1 24 0 419 273 39 23 chr3 32679357 32679485 -194845093 + L2 LINE L2 3171 3300 -13 407 252 75 25 chr3 32679622 32679781 -194844797 - MER20B DNA MER1_type -616 167 1 1916 163 7 0 chr3 32681762 32682062 -194842516 - AluSx SINE Alu -5 307 6 459 238 10 20 chr3 32683342 32683443 -194841135 - L2 LINE L2 0 3272 3173 241 324 78 34 chr3 32683700 32683996 -194840582 - L1ME LINE L1 -347 5774 5466 1043 227 46 44 chr3 32684497 32684730 -194839848 + MER39 LTR ERV1 181 412 -295 603 0 0 0 chr3 32684730 32684797 -194839781 + (CA)n Simple_repeat Simple_repeat 2 68 0 1043 227 46 44 chr3 32684797 32684956 -194839622 + MER39 LTR ERV1 412 696 -11 619 291 136 25 chr3 32685037 32685553 -194839025 - L1ME3A LINE L1 -299 5871 5299 780 254 0 5 chr3 32686762 32686947 -194837631 - FRAM SINE Alu 0 176 1 338 233 140 46 chr3 32686957 32687132 -194837446 - MIR SINE MIR -41 221 24 1533 178 259 0 chr3 32688585 32688956 -194835622 - MLT1C LTR MaLR 0 467 1 258 116 0 0 chr3 32689458 32689501 -194835077 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2356 265 50 26 chr3 32689505 32690233 -194834345 - MER20B DNA MER1_type -4 779 35 228 228 0 0 chr3 32690885 32690942 -194833636 + CT-rich Low_complexity Low_complexity 4 60 0 413 81 65 0 chr3 32691750 32691812 -194832766 + MADE1 DNA Mariner 1 66 -14 261 368 88 0 chr3 32693129 32693243 -194831335 + MIR SINE MIR 20 143 -119 191 355 16 0 chr3 32693679 32693741 -194830837 - MIR3 SINE MIR -4 204 142 273 221 26 13 chr3 32694850 32694927 -194829651 + MER116 DNA Mariner 3 80 0 2047 149 0 0 chr3 32695078 32695460 -194829118 + AluSc SINE Alu 3 384 0 22 0 0 0 chr3 32695462 32695484 -194829094 + AT_rich Low_complexity Low_complexity 1 22 0 612 324 43 8 chr3 32697832 32698085 -194826493 + L2 LINE L2 3051 3312 -1 219 344 0 0 chr3 32698304 32698368 -194826210 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 237 284 49 49 chr3 32698376 32698457 -194826121 - L2 LINE L2 -32 3281 3201 636 268 164 0 chr3 32698750 32698963 -194825615 + MIR SINE MIR 2 249 -13 250 269 99 50 chr3 32699313 32699463 -194825115 - MIR SINE MIR -64 144 10 1420 260 72 52 chr3 32700143 32700696 -194823882 - MLT1E LTR MaLR -29 564 1 205 303 66 33 chr3 32701398 32701520 -194823058 + MIR SINE MIR 21 146 -116 234 86 0 0 chr3 32701659 32701694 -194822884 + MLT2F LTR ERVL 107 141 -522 1255 309 56 12 chr3 32701901 32702380 -194822198 - L2 LINE L2 -4 3309 2810 209 279 73 0 chr3 32702548 32702616 -194821962 + L2 LINE L2 3186 3258 -14 1326 204 45 64 chr3 32704089 32704587 -194819991 + MER39 LTR ERV1 1 707 0 190 463 8 8 chr3 32705145 32705268 -194819310 - L2 LINE L2 -23 3249 3127 180 308 0 0 chr3 32706232 32706284 -194818294 - MIR SINE MIR -50 212 161 702 280 131 18 chr3 32706366 32706748 -194817830 + L1ME3A LINE L1 5674 6098 -72 224 261 29 0 chr3 32707509 32707578 -194817000 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 230 241 63 25 chr3 32707733 32707812 -194816766 - L3 LINE CR1 -1213 364 283 566 147 20 0 chr3 32708096 32708198 -194816380 - L1MA6 LINE L1 0 6300 6197 878 102 30 18 chr3 32708204 32708371 -194816207 + L1M2 LINE L1 5321 5489 -811 540 269 7 14 chr3 32708371 32708516 -194816062 - MIR SINE MIR -22 240 97 1655 56 5 0 chr3 32708603 32708817 -194815761 - L1PA5 LINE L1 0 6154 5940 247 387 42 8 chr3 32708819 32708938 -194815640 - L2 LINE L2 -12 3260 3138 2108 128 3 0 chr3 32709064 32709360 -194815218 - AluJb SINE Alu -15 297 1 411 274 45 110 chr3 32709617 32709953 -194814625 + MLT1H LTR MaLR 70 383 -26 193 143 29 0 chr3 32710051 32710086 -194814492 + L2 LINE L2 3039 3074 -239 1070 226 45 3 chr3 32710193 32710485 -194814093 + MER33 DNA MER1_type 21 324 0 367 320 31 16 chr3 32711638 32711766 -194812812 - MIR SINE MIR -56 152 23 630 204 140 6 chr3 32711852 32712009 -194812569 + MER5B DNA MER1_type 1 178 0 775 211 29 34 chr3 32712369 32712577 -194812001 + MER3 DNA MER1_type 2 208 -1 324 315 29 53 chr3 32713570 32713638 -194810940 + MIR SINE MIR 20 88 -174 464 64 0 170 chr3 32713638 32713732 -194810846 + MADE1 DNA Mariner 1 78 -2 324 315 29 53 chr3 32713732 32713855 -194810723 + MIR SINE MIR 88 203 -59 356 66 49 0 chr3 32714035 32714096 -194810482 - L1MB4 LINE L1 0 6180 6117 2696 170 66 15 chr3 32714098 32714705 -194809873 - L1MB4 LINE L1 -226 5957 5320 918 267 4 28 chr3 32714903 32715150 -194809428 - MIR SINE MIR -5 257 17 803 299 94 39 chr3 32715529 32715963 -194808615 - L2 LINE L2 0 3313 2856 1159 221 40 35 chr3 32717567 32717938 -194806640 - MLT1A2 LTR MaLR 0 374 2 24 53 0 0 chr3 32718032 32718070 -194806508 + AT_rich Low_complexity Low_complexity 1 38 0 1573 210 42 55 chr3 32718319 32718768 -194805810 + MLT1D LTR MaLR 1 444 -61 1819 170 3 0 chr3 32718768 32719068 -194805510 + AluJb SINE Alu 1 301 -11 1573 210 42 55 chr3 32719068 32719123 -194805455 + MLT1D LTR MaLR 444 498 -7 955 179 45 2 chr3 32719365 32719660 -194804918 - MLT1A1 LTR MaLR -2 363 1 27 62 0 0 chr3 32719875 32719923 -194804655 + AT_rich Low_complexity Low_complexity 1 48 0 543 279 13 13 chr3 32721150 32721304 -194803274 + MIR SINE MIR 75 228 -34 23 33 0 0 chr3 32721320 32721350 -194803228 + AT_rich Low_complexity Low_complexity 1 30 0 1340 212 74 37 chr3 32721697 32722175 -194802403 + MLT1D LTR MaLR 1 353 -12 592 326 98 68 chr3 32722382 32723325 -194801253 - L2 LINE L2 -452 2862 1892 723 266 142 4 chr3 32723405 32723631 -194800947 - MIR SINE MIR -5 257 1 272 281 52 52 chr3 32723631 32723770 -194800808 - MIR SINE MIR -62 200 62 871 236 100 133 chr3 32724855 32725352 -194799226 - MLT1J1 LTR MaLR 0 446 1 1164 209 122 40 chr3 32725540 32725942 -194798636 + MSTB2 LTR MaLR 23 457 0 330 359 8 0 chr3 32726322 32726439 -194798139 - L3 LINE CR1 -1 1576 1459 858 327 144 20 chr3 32726940 32727545 -194797033 - L3 LINE CR1 -148 1429 750 21 0 0 0 chr3 32728638 32728659 -194795919 + AT_rich Low_complexity Low_complexity 1 21 0 4938 192 23 7 chr3 32731760 32733396 -194791182 + L1MB7 LINE L1 4229 5892 -292 13713 188 40 12 chr3 32733406 32736750 -194787828 + L1MA4A LINE L1 10 3444 -3404 28274 125 11 58 chr3 32736762 32743220 -194781358 + L1PA7 LINE L1 12 6151 -3 331 273 93 0 chr3 32743222 32743361 -194781217 + L1MA4A LINE L1 3439 3590 -3258 9583 158 23 25 chr3 32743363 32745554 -194779024 + L1MA4A LINE L1 4007 6185 -820 2110 117 7 0 chr3 32745554 32745837 -194778741 - AluSg SINE Alu -25 285 1 9583 158 23 25 chr3 32745837 32746655 -194777923 + L1MA4A LINE L1 6185 7003 -2 923 145 77 133 chr3 32746652 32746716 -194777862 + L1MB7 LINE L1 5879 5945 -239 * 268 25 25 0 chr3 32746716 32746756 -194777822 - MADE1 DNA Mariner -3 77 37 923 145 77 133 chr3 32746756 32746976 -194777602 + L1MB7 LINE L1 5945 6184 0 21 0 0 0 chr3 32747629 32747650 -194776928 + AT_rich Low_complexity Low_complexity 1 21 0 208 250 191 0 chr3 32748281 32748349 -194776229 + L2 LINE L2 3229 3309 -4 373 315 80 63 chr3 32749222 32749508 -194775070 + L1ME LINE L1 4 294 -5776 4001 227 87 64 chr3 32749978 32751193 -194773385 + L1ME LINE L1 3031 4216 -1884 2115 144 11 40 chr3 32751193 32751279 -194773299 - MER47A DNA MER2_type -1957 366 279 1912 159 51 0 chr3 32751279 32751574 -194773004 + AluSg SINE Alu 1 310 0 2115 144 11 40 chr3 32751574 32751863 -194772715 - MER47A DNA MER2_type -2044 279 2 4001 227 87 64 chr3 32751863 32752993 -194771585 + L1ME LINE L1 4216 5473 -627 492 157 207 71 chr3 32753620 32753760 -194770818 - MER3 DNA MER1_type -1 208 50 282 337 0 0 chr3 32753884 32753970 -194770608 + MIR SINE MIR 176 261 -1 180 0 0 0 chr3 32756300 32756320 -194768258 + (A)n Simple_repeat Simple_repeat 1 20 0 968 259 99 51 chr3 32756431 32756998 -194767580 + HAL1b LINE L1 311 904 -444 234 0 0 0 chr3 32759206 32759232 -194765346 + (T)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr3 32759256 32759276 -194765302 + (A)n Simple_repeat Simple_repeat 1 20 0 764 191 27 32 chr3 32760185 32760373 -194764205 + MER5A DNA MER1_type 1 187 -2 1041 211 9 52 chr3 32760385 32760617 -194763961 - MER58A DNA MER1_type -2 222 1 2032 159 0 6 chr3 32760696 32761010 -194763568 - AluJo SINE Alu 0 312 1 2240 299 115 48 chr3 32761020 32762194 -194762384 - HAL1 LINE L1 -221 2286 1192 2100 135 0 16 chr3 32762194 32762506 -194762072 + AluSx SINE Alu 5 311 -1 2240 299 115 48 chr3 32762506 32763473 -194761105 - HAL1 LINE L1 -1315 1192 2 24 32 0 0 chr3 32766052 32766083 -194758495 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr3 32767177 32767211 -194757367 + (TA)n Simple_repeat Simple_repeat 2 35 0 1744 169 11 4 chr3 32767211 32767489 -194757089 - AluJb SINE Alu -27 285 6 3463 171 20 5 chr3 32767643 32768296 -194756282 + L1MB7 LINE L1 5505 6167 -17 1639 184 7 26 chr3 32768308 32768617 -194755961 + AluJo SINE Alu 1 303 -9 1915 187 68 35 chr3 32769252 32769369 -194755209 + MLT1D LTR MaLR 3 115 -390 1981 122 14 0 chr3 32769369 32769498 -194755080 + AluSx SINE Alu 1 127 -179 324 0 0 0 chr3 32769498 32769534 -194755044 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1981 122 14 0 chr3 32769534 32769706 -194754872 + AluSx SINE Alu 127 306 0 1915 187 68 35 chr3 32769706 32770074 -194754504 + MLT1D LTR MaLR 115 505 0 2236 87 3 50 chr3 32771237 32771560 -194753018 + AluSp SINE Alu 1 308 -5 1301 313 34 2 chr3 32771606 32772018 -194752560 + MLT1J2 LTR MaLR 1 425 -25 251 321 15 53 chr3 32772197 32772328 -194752250 - MARNA DNA Mariner -393 193 68 306 290 21 0 chr3 32772920 32773013 -194751565 + MIR SINE MIR 110 204 -58 991 128 7 0 chr3 32773018 32773159 -194751419 + AluSq/x SINE Alu 1 142 -171 228 35 0 0 chr3 32773259 32773288 -194751290 + (CA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr3 32774080 32774109 -194750469 + (T)n Simple_repeat Simple_repeat 1 29 0 273 298 25 83 chr3 32775633 32775754 -194748824 - L2 LINE L2 -25 3247 3134 533 345 114 30 chr3 32775905 32776429 -194748149 - L2 LINE L2 -452 2862 2295 248 33 0 0 chr3 32776801 32776831 -194747747 + L1MA1 LINE L1 5893 5922 -380 312 197 4 0 chr3 32776835 32776901 -194747677 + Alu SINE Alu 1 48 -255 231 114 0 0 chr3 32777453 32777488 -194747090 + (CA)n Simple_repeat Simple_repeat 1 35 0 231 289 24 0 chr3 32777972 32778055 -194746523 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 2224 115 3 0 chr3 32780408 32780704 -194743874 - AluSx SINE Alu -15 297 1 378 291 103 12 chr3 32781815 32781980 -194742598 - MIR SINE MIR -10 252 73 431 305 75 25 chr3 32782498 32782698 -194741880 - MLT1L LTR MaLR -5 610 401 253 250 0 0 chr3 32782796 32782866 -194741712 - MLT1L LTR MaLR -333 178 115 235 225 25 75 chr3 32782813 32782893 -194741685 - LTR67 LTR ERVL -385 172 97 * 1819 155 11 0 chr3 32783793 32784070 -194740508 + AluJb SINE Alu 6 285 -27 287 281 182 8 chr3 32784536 32784657 -194739921 + MIR3 SINE MIR 67 208 0 380 322 17 0 chr3 32785061 32785176 -194739402 - L2 LINE L2 0 3272 3156 1040 224 168 12 chr3 32785347 32785669 -194738909 + L1ME1 LINE L1 5790 6161 -5 249 255 0 122 chr3 32787834 32787876 -194736702 - MIR SINE MIR -105 103 78 1771 164 44 30 chr3 32787876 32788242 -194736336 - THE1C LTR MaLR 0 375 5 249 255 0 122 chr3 32788242 32788297 -194736281 - MIR SINE MIR -130 78 18 23 33 0 0 chr3 32789502 32789532 -194735046 + AT_rich Low_complexity Low_complexity 1 30 0 290 172 0 52 chr3 32789589 32789647 -194734931 + L2 LINE L2 3259 3313 0 379 254 170 38 chr3 32789798 32789967 -194734611 + MIR3 SINE MIR 5 186 -52 584 323 20 31 chr3 32790896 32791150 -194733428 - MIR SINE MIR -10 252 2 1261 235 100 32 chr3 32791338 32791900 -194732678 + L1MC5 LINE L1 6929 7528 -433 182 88 0 29 chr3 32791925 32791959 -194732619 + (TA)n Simple_repeat Simple_repeat 2 34 0 2637 86 5 21 chr3 32791969 32792342 -194732236 - L1PA8A LINE L1 -9 6122 5756 348 261 170 20 chr3 32793444 32793597 -194730981 + MER5B DNA MER1_type 3 178 0 210 326 177 17 chr3 32793797 32793978 -194730600 + MIR SINE MIR 34 243 -19 23 0 0 0 chr3 32794214 32794237 -194730341 + AT_rich Low_complexity Low_complexity 1 23 0 1806 269 56 5 chr3 32795041 32795617 -194728961 + L1ME3A LINE L1 5566 6170 0 2206 112 3 0 chr3 32796059 32796353 -194728225 - AluSg SINE Alu -15 295 1 749 245 80 24 chr3 32796838 32797050 -194727528 + MER58A DNA MER1_type 1 224 0 682 239 96 10 chr3 32797567 32797764 -194726814 - MIR SINE MIR 0 262 49 627 251 54 67 chr3 32797816 32797856 -194726722 - MER58A DNA MER1_type -2196 224 185 2021 153 3 0 chr3 32797856 32798164 -194726414 + AluSx SINE Alu 1 309 -3 627 251 54 67 chr3 32798164 32798346 -194726232 - MER58A DNA MER1_type -2235 185 5 218 344 141 25 chr3 32799023 32799186 -194725392 + MER91A DNA MER1_type 2 183 -13 2259 173 18 43 chr3 32800454 32800893 -194723685 + MSTA LTR MaLR 1 428 0 371 335 115 0 chr3 32800931 32801131 -194723447 - L2 LINE L2 0 3313 3091 1253 156 25 0 chr3 32802559 32802758 -194721820 - Tigger5 DNA MER2_type 0 2323 2120 1111 160 0 6 chr3 32802775 32802944 -194721634 + AluJb SINE Alu 129 296 -16 981 129 14 0 chr3 32802965 32803112 -194721466 - L1MA3 LINE L1 0 6305 6157 42836 59 7 1 chr3 32803127 32809178 -194715400 + L1PA4 LINE L1 11 6096 -59 224 327 160 40 chr3 32809463 32809613 -194714965 - L2 LINE L2 -188 3084 2917 389 327 80 24 chr3 32809706 32809957 -194714621 - L2 LINE L2 -556 2758 2494 2533 62 13 0 chr3 32810348 32810652 -194713926 - AluY SINE Alu -3 308 1 228 246 18 0 chr3 32811018 32811075 -194713503 - MIR SINE MIR -76 186 129 489 296 83 29 chr3 32813369 32813609 -194710969 + MIR SINE MIR 10 262 0 1919 196 42 11 chr3 32814398 32814776 -194709802 + MLT1B LTR MaLR 1 390 0 292 286 75 38 chr3 32815293 32815426 -194709152 + MIR3 SINE MIR 65 202 -6 716 236 89 29 chr3 32817451 32817697 -194706881 + MIR SINE MIR 2 262 0 189 0 0 0 chr3 32817862 32817883 -194706695 + (A)n Simple_repeat Simple_repeat 1 21 0 717 250 65 34 chr3 32818644 32818980 -194705598 - LTR33A LTR ERVL -2 521 140 331 111 0 19 chr3 32819121 32819175 -194705403 + LTR33A LTR ERVL 6 58 -465 414 236 142 20 chr3 32819374 32819465 -194705113 + MIR SINE MIR 2 81 -181 2004 199 40 0 chr3 32819465 32819816 -194704762 + MLT1A1 LTR MaLR 1 365 0 414 236 142 20 chr3 32819816 32819872 -194704706 + MIR SINE MIR 81 167 -95 612 268 41 21 chr3 32820653 32820847 -194703731 + MIR SINE MIR 65 262 0 243 0 0 0 chr3 32821667 32821694 -194702884 + (T)n Simple_repeat Simple_repeat 1 27 0 1880 107 4 0 chr3 32822448 32822701 -194701877 - AluSg SINE Alu -14 296 43 488 262 32 8 chr3 32823198 32823324 -194701254 + MER91B DNA MER1_type 2 130 -60 333 199 253 54 chr3 32823477 32823531 -194701047 + Charlie4 DNA MER1_type 32 74 -1887 1516 147 0 13 chr3 32823531 32823763 -194700815 - AluJb SINE Alu -83 229 1 333 199 253 54 chr3 32823763 32823874 -194700704 + Charlie4 DNA MER1_type 74 230 -1731 463 226 88 0 chr3 32823916 32824018 -194700560 + Charlie4 DNA MER1_type 1830 1940 -21 201 39 0 0 chr3 32824020 32824046 -194700532 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2110 110 0 23 chr3 32824971 32825270 -194699308 + AluSx SINE Alu 1 292 -20 261 174 22 0 chr3 32825270 32825316 -194699262 + Tigger5 DNA MER2_type 8 54 -2269 * 342 188 29 14 chr3 32825287 32825356 -194699222 + Tigger5 DNA MER2_type 2251 2320 -3 394 164 52 112 chr3 32825394 32825510 -194699068 + Tigger5 DNA MER2_type 2215 2323 0 3924 178 43 1 chr3 32826315 32827052 -194697526 + L1MB7 LINE L1 5417 6184 0 207 211 140 0 chr3 32827463 32827520 -194697058 - MIR SINE MIR -108 154 90 1088 279 73 18 chr3 32828715 32829098 -194695480 + L2 LINE L2 2365 2768 -546 282 277 297 15 chr3 32829173 32829368 -194695210 - MIR SINE MIR 0 262 13 180 176 0 0 chr3 32830785 32830819 -194693759 + GA-rich Low_complexity Low_complexity 3 36 0 1714 149 30 37 chr3 32831369 32831665 -194692913 + AluSx SINE Alu 4 297 -15 1290 213 5 0 chr3 32832067 32832288 -194692290 + MER58A DNA MER1_type 3 224 0 1017 338 69 28 chr3 32832489 32832700 -194691878 - L3 LINE CR1 -137 1440 1239 2270 125 3 0 chr3 32832700 32833011 -194691567 - AluSx SINE Alu 0 312 1 1017 338 69 28 chr3 32833011 32833308 -194691270 - L3 LINE CR1 -338 1239 911 2266 84 19 23 chr3 32833393 32833702 -194690876 - AluY SINE Alu -3 308 1 2429 91 3 0 chr3 32833750 32834058 -194690520 - AluSg SINE Alu -1 309 1 1050 313 29 8 chr3 32834234 32834617 -194689961 + MLT1I LTR MaLR 17 407 -2 316 196 147 69 chr3 32834633 32834735 -194689843 - L2 LINE L2 0 3313 3204 262 368 8 17 chr3 32834860 32834977 -194689601 + MIR SINE MIR 19 134 -74 196 339 51 42 chr3 32834991 32835109 -194689469 - L3 LINE CR1 -69 1508 1390 221 249 142 91 chr3 32835364 32835561 -194689017 - L2 LINE L2 -217 3055 2849 456 325 11 43 chr3 32836547 32836735 -194687843 - MIR SINE MIR -46 216 35 627 274 21 52 chr3 32836914 32837202 -194687376 + Charlie8 DNA MER1_type 47 261 -2156 285 269 10 58 chr3 32837269 32837373 -194687205 + MIR SINE MIR 58 156 -106 507 337 72 54 chr3 32837491 32837823 -194686755 + LTR67 LTR ERVL 149 486 -71 1325 193 86 82 chr3 32837931 32838053 -194686525 - MER69 DNA AcHobo -12 2514 2394 1929 159 0 3 chr3 32838053 32838349 -194686229 + AluJo SINE Alu 3 297 -15 1325 193 86 82 chr3 32838349 32838764 -194685814 - MER69 DNA AcHobo -132 2394 1975 30 45 0 0 chr3 32838915 32838959 -194685619 + AT_rich Low_complexity Low_complexity 1 44 0 1462 134 22 5 chr3 32838960 32839184 -194685394 - L1PA16 LINE L1 -9 6157 5930 732 112 0 0 chr3 32839319 32839426 -194685152 - L1PA16 LINE L1 -296 5870 5764 254 345 11 0 chr3 32839432 32839519 -194685059 - MER20B DNA MER1_type -580 203 116 839 271 110 3 chr3 32839538 32839830 -194684748 - MER69 DNA AcHobo -900 326 4 2065 122 0 17 chr3 32839953 32840247 -194684331 - AluSx SINE Alu -23 289 1 289 292 31 10 chr3 32841198 32841294 -194683284 - MIR3 SINE MIR -30 178 81 218 133 0 22 chr3 32841607 32841652 -194682926 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2083 133 3 7 chr3 32845764 32846066 -194678512 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr3 32846190 32846211 -194678367 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 32846939 32846972 -194677606 + AT_rich Low_complexity Low_complexity 1 33 0 1118 255 106 37 chr3 32847190 32847700 -194676878 - MLT1H LTR MaLR -4 545 1 262 231 111 75 chr3 32848219 32848418 -194676160 + HAL1 LINE L1 798 1003 -1504 4349 139 8 3 chr3 32849223 32849855 -194674723 - MER41B LTR ERV1 0 635 1 1249 276 74 72 chr3 32851076 32851170 -194673408 + HAL1 LINE L1 1088 1180 -1327 2268 35 0 0 chr3 32851170 32851428 -194673150 - L1PA4 LINE L1 -3 6152 5895 1249 276 74 72 chr3 32851428 32852120 -194672458 + HAL1 LINE L1 1180 1875 -632 351 298 109 37 chr3 32852216 32852565 -194672013 + HAL1 LINE L1 2019 2392 -115 2009 159 0 0 chr3 32852566 32852868 -194671710 + AluSx SINE Alu 1 302 -10 36014 65 5 4 chr3 32852880 32859022 -194665556 + L1PA5 LINE L1 1 6154 0 689 248 74 41 chr3 32859343 32859585 -194664993 + MIR SINE MIR 13 262 0 248 206 16 32 chr3 32860321 32860384 -194664194 + U7 snRNA snRNA 1 62 -1 239 237 169 0 chr3 32861322 32861381 -194663197 - L2 LINE L2 -59 3254 3186 1090 318 92 11 chr3 32861789 32862236 -194662342 + L2 LINE L2 2831 3313 0 351 0 0 0 chr3 32862425 32862464 -194662114 + (CA)n Simple_repeat Simple_repeat 2 40 0 2226 156 23 0 chr3 32863530 32863920 -194660658 + MER57A LTR ERV1 1 399 -4 607 322 99 23 chr3 32865904 32865946 -194658632 + L2 LINE L2 2987 3024 -289 1175 194 19 5 chr3 32865946 32866162 -194658416 + MER20 DNA MER1_type 1 219 0 607 322 99 23 chr3 32866162 32866423 -194658155 + L2 LINE L2 3024 3313 0 304 237 37 74 chr3 32866792 32866927 -194657651 + MLT1L LTR MaLR 205 334 -281 293 200 80 72 chr3 32866930 32867055 -194657523 + MLT1J LTR MaLR 386 511 0 441 0 0 0 chr3 32867353 32867402 -194657176 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 350 43 8 chr3 32867550 32867667 -194656911 + L2 LINE L2 3137 3257 -15 2547 80 0 0 chr3 32869713 32870015 -194654563 + AluSg SINE Alu 1 302 -8 413 264 70 30 chr3 32870258 32870459 -194654119 - MLT1H LTR MaLR -57 492 284 186 341 24 63 chr3 32871143 32871269 -194653309 - L2 LINE L2 -11 3261 3141 246 350 0 88 chr3 32871447 32871584 -194652994 - L2 LINE L2 -2122 1192 1068 210 247 221 13 chr3 32872471 32872548 -194652030 + MIR SINE MIR 40 132 -130 32 26 0 0 chr3 32872622 32872661 -194651917 + AT_rich Low_complexity Low_complexity 1 39 0 583 254 240 33 chr3 32872733 32873095 -194651483 - Charlie7 DNA MER1_type -2121 491 55 784 210 132 6 chr3 32873102 32873269 -194651309 - MER5A DNA MER1_type -1 188 1 515 270 102 58 chr3 32874076 32874574 -194650004 - MLT1G1 LTR MaLR -2 593 23 707 243 29 33 chr3 32874849 32875059 -194649519 + L2 LINE L2 3103 3311 -2 237 225 38 12 chr3 32875569 32875649 -194648929 + CT-rich Low_complexity Low_complexity 4 85 0 591 180 0 0 chr3 32876621 32876721 -194647857 - 5S rRNA rRNA -21 100 1 310 297 70 57 chr3 32877139 32877322 -194647256 + MIR SINE MIR 9 192 -70 230 366 0 0 chr3 32877325 32877396 -194647182 - L2 LINE L2 -2 3270 3200 741 274 37 14 chr3 32879272 32879487 -194645091 + MIR SINE MIR 22 241 -21 213 39 0 0 chr3 32879826 32879852 -194644726 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 236 338 14 14 chr3 32880522 32880596 -194643982 - MIR3 SINE MIR -33 175 102 28783 115 14 54 chr3 32880842 32887254 -194637324 - L1PA7 LINE L1 0 6154 12 1805 268 107 30 chr3 32887591 32888616 -194635962 + L2 LINE L2 2192 3311 -2 238 182 0 18 chr3 32888693 32888748 -194635830 - Charlie4 DNA MER1_type -25 1936 1883 252 366 136 0 chr3 32888845 32889036 -194635542 - L2 LINE L2 -348 2966 2750 297 75 0 0 chr3 32889514 32889554 -194635024 + (T)n Simple_repeat Simple_repeat 1 40 0 1040 171 49 0 chr3 32889575 32889739 -194634839 - AluJb SINE Alu -140 172 1 1803 253 87 13 chr3 32889785 32890334 -194634244 - MLT1G LTR MaLR 0 590 1 263 362 16 16 chr3 32890528 32890655 -194633923 - MIR SINE MIR -66 142 16 1504 187 73 33 chr3 32891861 32892161 -194632417 + AluJb SINE Alu 1 312 0 290 269 85 54 chr3 32893526 32893656 -194630922 - L2 LINE L2 -1 3312 3179 495 275 20 13 chr3 32893660 32893809 -194630769 - L2 LINE L2 -2 3311 3162 2249 79 21 0 chr3 32893968 32894258 -194630320 + AluSp SINE Alu 1 296 -17 240 228 0 63 chr3 32894262 32894341 -194630237 + L1MC/D LINE L1 5696 5769 -2039 210 259 0 19 chr3 32894400 32894454 -194630124 + (TATG)n Simple_repeat Simple_repeat 1 53 0 715 282 167 30 chr3 32895067 32895439 -194629139 - MLT1D LTR MaLR 0 505 83 * 768 184 7 0 chr3 32895437 32895573 -194629005 + MSTD LTR MaLR 10 146 -250 252 223 21 64 chr3 32895590 32895684 -194628894 - MLT1D LTR MaLR -415 90 1 180 219 0 0 chr3 32896063 32896104 -194628474 - L2 LINE L2 -1 3312 3272 180 236 194 21 chr3 32896123 32896267 -194628311 - L2 LINE L2 -124 3189 3021 1400 263 51 99 chr3 32896349 32896528 -194628050 - L2 LINE L2 -435 2879 2693 1048 168 91 0 chr3 32896528 32896725 -194627853 - MER20 DNA MER1_type -4 215 1 1400 263 51 99 chr3 32896725 32896867 -194627711 - L2 LINE L2 -621 2693 2546 1875 173 0 13 chr3 32896867 32897174 -194627404 + AluJb SINE Alu 1 303 -9 1400 263 51 99 chr3 32897174 32897726 -194626852 - L2 LINE L2 -768 2546 2047 633 247 259 13 chr3 32898668 32898984 -194625594 - LTR33 LTR ERVL -14 507 114 1084 247 25 4 chr3 32900167 32900410 -194624168 + MIR SINE MIR 13 260 -2 216 0 0 0 chr3 32901344 32901368 -194623210 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 389 187 13 0 chr3 32902106 32902181 -194622397 - MIR3 SINE MIR -17 191 116 232 329 47 0 chr3 32903707 32903792 -194620786 + MIR SINE MIR 52 140 -68 194 289 58 0 chr3 32903985 32904037 -194620541 - L2 LINE L2 -77 3195 3141 460 231 42 28 chr3 32904069 32904212 -194620366 + MER104 DNA Tc2 32 176 -4 750 254 100 17 chr3 32905658 32905898 -194618680 + MIR SINE MIR 2 261 -1 958 174 11 58 chr3 32906016 32906206 -194618372 + MER5A DNA MER1_type 7 187 -2 2321 95 0 7 chr3 32906901 32907205 -194617373 + AluSx SINE Alu 1 302 -10 223 296 122 41 chr3 32907482 32907580 -194616998 - MIR SINE MIR -63 145 40 378 185 0 49 chr3 32907856 32907937 -194616641 + MER3 DNA MER1_type 5 81 -128 30 18 0 54 chr3 32907937 32907973 -194616605 + AT_rich Low_complexity Low_complexity 1 35 -18 2359 87 0 7 chr3 32907973 32908272 -194616306 + AluSq SINE Alu 1 297 -16 30 18 0 54 chr3 32908272 32908291 -194616287 + AT_rich Low_complexity Low_complexity 35 53 0 267 237 17 0 chr3 32908594 32908653 -194615925 + CT-rich Low_complexity Low_complexity 2 61 0 24 0 0 0 chr3 32909965 32909989 -194614589 + AT_rich Low_complexity Low_complexity 1 24 0 282 226 0 0 chr3 32910338 32910400 -194614178 + MLT1K LTR MaLR 506 567 -21 304 313 100 51 chr3 32910412 32910917 -194613661 - L2 LINE L2 -128 3144 2566 562 228 48 18 chr3 32913726 32913893 -194610685 + MIR SINE MIR 66 237 -25 223 441 26 7 chr3 32913969 32914121 -194610457 - L2 LINE L2 0 3272 3118 903 182 0 0 chr3 32914381 32914535 -194610043 + MLT1A1 LTR MaLR 1 154 -211 473 179 0 12 chr3 32914539 32914623 -194609955 + FLAM_A SINE Alu 1 83 -59 1051 165 37 0 chr3 32914645 32914833 -194609745 + MLT1A1 LTR MaLR 170 364 -1 220 259 0 0 chr3 32915110 32915164 -194609414 - L2 LINE L2 -10 3303 3250 16697 164 31 10 chr3 32915232 32921955 -194602623 - L1PB1 LINE L1 -2 6865 3 248 336 129 9 chr3 32922135 32922251 -194602327 + MIR3 SINE MIR 76 205 -3 236 310 108 0 chr3 32923331 32923460 -194601118 - MIR SINE MIR -118 144 2 280 293 18 93 chr3 32923719 32923999 -194600579 + MLT1J LTR MaLR 99 357 -154 597 272 17 64 chr3 32924248 32924483 -194600095 + MIR SINE MIR 39 262 0 221 118 0 39 chr3 32925249 32925300 -194599278 + (TAAAAA)n Simple_repeat Simple_repeat 5 53 0 532 282 67 29 chr3 32925872 32926159 -194598419 + L1ME LINE L1 749 1066 -5004 2174 118 7 3 chr3 32926159 32926463 -194598115 - AluSx SINE Alu -7 305 1 532 282 67 29 chr3 32926463 32926612 -194597966 + L1ME LINE L1 1066 1208 -4862 5768 79 8 15 chr3 32926683 32927270 -194597308 + L1MA1 LINE L1 5486 6068 -234 2233 105 7 0 chr3 32927270 32927566 -194597012 + AluSg SINE Alu 1 298 -12 5768 79 8 15 chr3 32927566 32927797 -194596781 + L1MA1 LINE L1 6068 6299 -3 198 0 0 0 chr3 32928274 32928296 -194596282 + (A)n Simple_repeat Simple_repeat 1 22 0 190 207 103 35 chr3 32928979 32929037 -194595541 - L2 LINE L2 -14 3258 3197 816 144 0 0 chr3 32929624 32929742 -194594836 + FLAM_C SINE Alu 1 118 -25 694 230 94 0 chr3 32929989 32930180 -194594398 - MER3 DNA MER1_type 0 209 1 1866 183 20 50 chr3 32930709 32931109 -194593469 - MLT1B LTR MaLR 0 390 3 1053 216 44 20 chr3 32932218 32932514 -194592064 + LTR16C LTR ERVL 187 489 -2 1572 129 276 18 chr3 32932602 32932942 -194591636 - MSTA LTR MaLR 0 428 1 207 191 0 24 chr3 32933124 32933141 -194591437 + (CAA)n Simple_repeat Simple_repeat 2 18 -24 2121 116 0 0 chr3 32933141 32933425 -194591153 + AluSg SINE Alu 1 284 -26 207 191 0 24 chr3 32933425 32933449 -194591129 + (CAA)n Simple_repeat Simple_repeat 18 42 0 454 266 0 24 chr3 32935081 32935205 -194589373 - MER63A DNA MER1_type -36 174 54 1622 239 173 9 chr3 32935397 32936068 -194588510 - MER20B DNA MER1_type 0 784 4 540 200 57 91 chr3 32936987 32937125 -194587453 - L1ME3A LINE L1 0 6170 6042 2338 98 3 16 chr3 32937125 32937442 -194587136 + AluSp SINE Alu 1 313 0 540 200 57 91 chr3 32937442 32937533 -194587045 - L1ME3A LINE L1 -128 6042 5949 1820 227 25 57 chr3 32937533 32938173 -194586405 - L1ME3A LINE L1 -183 5987 5371 2910 212 29 60 chr3 32938277 32939240 -194585338 - L1ME1 LINE L1 -5 6161 5254 2094 102 0 0 chr3 32939240 32939505 -194585073 - AluSq SINE Alu -24 289 25 2910 212 29 60 chr3 32939505 32939863 -194584715 - L1ME1 LINE L1 -912 5254 4887 413 327 133 41 chr3 32940182 32940497 -194584081 - L2 LINE L2 0 3313 2970 1562 186 36 25 chr3 32940497 32940777 -194583801 + AluJb SINE Alu 1 283 -29 820 209 71 33 chr3 32940930 32941141 -194583437 - MER58A DNA MER1_type -5 219 1 2095 115 70 48 chr3 32941744 32942100 -194582478 + THE1B LTR MaLR 1 364 0 872 246 126 39 chr3 32942206 32942620 -194581958 - MLT1J LTR MaLR -40 471 22 280 283 29 102 chr3 32942755 32942960 -194581618 - MIR SINE MIR -60 202 13 729 216 196 4 chr3 32942992 32943247 -194581331 - MER31B LTR ERV1 0 485 180 1055 241 48 58 chr3 32943269 32943743 -194580835 - MER39 LTR ERV1 -20 687 4 599 196 19 32 chr3 32943748 32943906 -194580672 - MER31B LTR ERV1 -310 156 1 180 111 0 0 chr3 32944475 32944502 -194580076 + (TG)n Simple_repeat Simple_repeat 2 28 0 374 258 0 19 chr3 32945100 32945255 -194579323 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 2087 97 37 10 chr3 32945790 32946090 -194578488 - AluSg SINE Alu -2 308 1 796 246 98 5 chr3 32946097 32946300 -194578278 - MIR SINE MIR -39 223 2 716 167 39 26 chr3 32946337 32946493 -194578085 + MER3 DNA MER1_type 5 162 -47 1050 215 18 5 chr3 32947279 32947498 -194577080 + MER58A DNA MER1_type 1 222 -2 384 340 61 21 chr3 32947514 32947865 -194576713 + L1MC4a LINE L1 5540 5790 -331 209 302 63 0 chr3 32947931 32947994 -194576584 + L2 LINE L2 3244 3310 -3 320 204 129 21 chr3 32951562 32951655 -194572923 + MIR SINE MIR 44 146 -62 816 235 40 10 chr3 32951693 32951893 -194572685 - MIR SINE MIR -51 211 6 180 0 0 0 chr3 32955375 32955395 -194569183 + (T)n Simple_repeat Simple_repeat 1 20 0 2547 74 0 3 chr3 32958917 32959227 -194565351 - AluSc SINE Alu 0 309 1 217 195 143 13 chr3 32961321 32961398 -194563180 + MIR SINE MIR 120 206 -56 236 239 141 43 chr3 32961687 32961779 -194562799 + MARNA DNA Mariner 75 175 -411 354 336 32 24 chr3 32961797 32961922 -194562656 - L2 LINE L2 -7 3265 3140 232 284 27 0 chr3 32962003 32962077 -194562501 - MARNA DNA Mariner -259 327 252 580 303 166 14 chr3 32962310 32962726 -194561852 - MLT1H1 LTR MaLR -2 553 75 302 184 103 46 chr3 32962919 32963006 -194561572 - MIR SINE MIR -71 191 100 503 161 154 74 chr3 32963263 32963360 -194561218 - MER5A DNA MER1_type -4 185 68 2327 80 23 0 chr3 32963360 32963659 -194560919 - AluSp SINE Alu -7 306 1 503 161 154 74 chr3 32963659 32963723 -194560855 - MER5A DNA MER1_type -121 68 11 778 266 138 7 chr3 32965208 32965490 -194559088 + MER5C DNA MER1_type 4 322 -2 216 0 0 0 chr3 32966669 32966693 -194557885 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr3 32966774 32966797 -194557781 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 324 0 0 0 chr3 32966796 32966832 -194557746 + (GA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 32967146 32967167 -194557411 + AT_rich Low_complexity Low_complexity 1 21 0 550 276 8 0 chr3 32967219 32967346 -194557232 - MER5B DNA MER1_type -50 128 1 187 308 146 31 chr3 32967354 32967484 -194557094 + L2 LINE L2 3168 3312 -1 483 255 77 48 chr3 32968114 32968322 -194556256 + L1ME4a LINE L1 5495 5708 -413 270 281 148 32 chr3 32968325 32968542 -194556036 + L1ME4a LINE L1 5822 6063 -58 555 361 73 31 chr3 32969060 32969844 -194554734 - L2 LINE L2 -8 3305 2486 411 292 169 13 chr3 32970252 32970406 -194554172 - MER5A DNA MER1_type -3 186 9 2162 92 4 0 chr3 32970541 32970848 -194553730 - AluSx SINE Alu 0 319 12 237 319 58 43 chr3 32970936 32971074 -194553504 + MIR SINE MIR 42 181 -81 1851 162 13 3 chr3 32971724 32972032 -194552546 + AluSq SINE Alu 1 311 -2 1806 258 63 0 chr3 32972679 32973110 -194551468 - MLT1H LTR MaLR 0 549 92 932 94 0 16 chr3 32973157 32973284 -194551294 - FLAM_C SINE Alu -18 125 1 180 309 0 0 chr3 32973437 32973479 -194551099 + L2 LINE L2 3248 3289 -24 2406 85 0 0 chr3 32973494 32973787 -194550791 + AluSc SINE Alu 1 293 -16 34 93 0 0 chr3 32974758 32974855 -194549723 + AT_rich Low_complexity Low_complexity 1 97 0 419 244 98 55 chr3 32975012 32975266 -194549312 - L1ME LINE L1 -297 5824 5560 592 244 155 16 chr3 32976064 32976257 -194548321 + MIR SINE MIR 20 239 -23 184 256 93 0 chr3 32976223 32976266 -194548312 + L2 LINE L2 3251 3297 -16 * 198 0 0 0 chr3 32976290 32976312 -194548266 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2239 68 3 31 chr3 32976314 32976607 -194547971 - AluSp SINE Alu -28 285 1 1084 215 20 0 chr3 32976806 32977001 -194547577 - MER58A DNA MER1_type 0 224 26 381 289 13 15 chr3 32977344 32977523 -194547055 - MLT1H LTR MaLR 0 549 310 1025 322 31 14 chr3 32979394 32979754 -194544824 - MLT1I LTR MaLR -4 405 40 638 316 0 5 chr3 32980333 32980529 -194544049 + L2 LINE L2 3119 3313 0 1940 250 68 77 chr3 32981266 32981866 -194542712 - MLT1G LTR MaLR 0 590 1 860 103 13 77 chr3 32983443 32983598 -194540980 + AluSg/x SINE Alu 150 294 -16 2120 116 0 7 chr3 32983612 32983905 -194540673 + AluSx SINE Alu 1 291 -21 774 237 34 0 chr3 32984541 32984729 -194539849 + MER58B DNA MER1_type 139 338 -3 2610 55 0 0 chr3 32984751 32985061 -194539517 + AluY SINE Alu 1 310 -1 399 224 21 0 chr3 32985132 32985238 -194539340 + MIR SINE MIR 36 147 -76 193 283 0 0 chr3 32985463 32985509 -194539069 - MIR SINE MIR -5 257 212 242 277 75 43 chr3 32985648 32985742 -194538836 + L2 LINE L2 3163 3259 -13 902 254 24 27 chr3 32986179 32986434 -194538144 - MIR SINE MIR 0 262 3 2280 116 3 0 chr3 32986693 32986996 -194537582 - AluSp SINE Alu -9 304 1 441 280 8 17 chr3 32988031 32988149 -194536429 - MLT1H LTR MaLR -376 173 57 460 215 84 28 chr3 32988242 32988349 -194536229 - L2 LINE L2 -2 3311 3199 225 256 147 62 chr3 32988503 32988632 -194535946 + MIR3 SINE MIR 8 147 -61 216 0 0 0 chr3 32988828 32988852 -194535726 + (T)n Simple_repeat Simple_repeat 1 24 0 543 259 21 0 chr3 32988858 32989001 -194535577 - MIR SINE MIR -67 195 50 228 204 0 0 chr3 32990101 32990145 -194534433 - L2 LINE L2 -2 3270 3227 186 198 19 160 chr3 32990172 32990244 -194534334 + L2 LINE L2 3223 3277 -36 2008 194 82 45 chr3 32990244 32990780 -194533798 - LTR38 LTR ERV1 0 556 1 186 198 19 160 chr3 32990780 32990813 -194533765 + L2 LINE L2 3277 3313 0 180 356 35 0 chr3 32991050 32991137 -194533441 - L2 LINE L2 -230 3042 2953 319 269 146 87 chr3 32991292 32991567 -194533011 + L2 LINE L2 3011 3301 -12 391 210 29 123 chr3 32992961 32993099 -194531479 - MLT1J1 LTR MaLR -321 125 1 235 203 25 101 chr3 32993107 32993186 -194531392 - MIR SINE MIR -71 191 119 28 0 0 0 chr3 32994456 32994484 -194530094 + AT_rich Low_complexity Low_complexity 1 28 0 2037 109 27 24 chr3 32994869 32995163 -194529415 - AluSx SINE Alu -17 295 1 269 294 0 101 chr3 32995168 32995287 -194529291 + MIR SINE MIR 156 262 0 29 28 0 0 chr3 32995389 32995425 -194529153 + AT_rich Low_complexity Low_complexity 1 36 0 1186 176 32 23 chr3 32995696 32995912 -194528666 - MER20 DNA MER1_type 0 219 2 2046 102 3 38 chr3 32995916 32996229 -194528349 + AluSq SINE Alu 1 302 -11 339 243 232 22 chr3 32996303 32996488 -194528090 - MIR SINE MIR -8 254 31 2036 111 7 7 chr3 32998017 32998306 -194526272 - AluSx SINE Alu -21 291 3 2082 135 3 3 chr3 32998442 32998746 -194525832 + AluSx SINE Alu 1 304 -8 467 273 100 7 chr3 32999475 32999625 -194524953 + MIR SINE MIR 98 261 -1 29 0 0 0 chr3 32999726 32999755 -194524823 + AT_rich Low_complexity Low_complexity 1 29 0 2155 115 3 0 chr3 32999756 33000042 -194524536 - AluSx SINE Alu -25 287 1 955 142 0 7 chr3 33000056 33000211 -194524367 - AluSg/x SINE Alu -7 303 150 215 288 68 0 chr3 33000569 33000642 -194523936 - L2 LINE L2 -7 3265 3188 1600 194 20 3 chr3 33001270 33001564 -194523014 + AluJb SINE Alu 7 305 -7 2250 87 0 26 chr3 33001585 33001894 -194522684 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr3 33001929 33001951 -194522627 + AT_rich Low_complexity Low_complexity 1 22 0 280 288 117 0 chr3 33002894 33003005 -194521573 + L2 LINE L2 3140 3263 -9 877 193 24 70 chr3 33003050 33003192 -194521386 + MER3 DNA MER1_type 1 131 -78 2300 93 0 7 chr3 33003192 33003528 -194521050 - AluSg SINE Alu 0 310 1 877 193 24 70 chr3 33003528 33003598 -194520980 + MER3 DNA MER1_type 131 203 -6 1064 118 12 17 chr3 33004116 33005329 -194519249 - HSATII Satellite Satellite -9 1207 1 878 116 5 0 chr3 33005352 33005791 -194518787 - HSATII Satellite Satellite -9 441 1 1802 163 28 0 chr3 33006334 33006622 -194517956 - AluJb SINE Alu -16 296 1 923 112 19 14 chr3 33007049 33007745 -194516833 - HSATII Satellite Satellite 0 699 1 899 130 3 17 chr3 33007775 33008125 -194516453 - HSATII Satellite Satellite -148 345 1 907 105 13 19 chr3 33008152 33008470 -194516108 - HSATII Satellite Satellite 0 316 1 724 126 19 19 chr3 33008495 33008654 -194515924 - HSATII Satellite Satellite 0 170 12 789 149 0 0 chr3 33008811 33009185 -194515393 + (GAATG)n Satellite Satellite 1 374 0 1092 101 0 0 chr3 33009197 33009375 -194515203 + (GAATG)n Satellite Satellite 2 179 0 1119 125 3 3 chr3 33009403 33009721 -194514857 + (GAATG)n Satellite Satellite 1 318 0 522 103 0 0 chr3 33009736 33009823 -194514755 + (GAATG)n Satellite Satellite 5 91 0 956 117 8 14 chr3 33009988 33011069 -194513509 - HSATII Satellite Satellite -31 1075 1 193 317 0 0 chr3 33011652 33011693 -194512885 + MIR SINE MIR 35 75 -187 309 237 13 13 chr3 33011837 33011913 -194512665 - MIR SINE MIR -60 202 127 704 216 95 0 chr3 33012401 33012549 -194512029 - MER5A DNA MER1_type -25 164 3 236 309 0 0 chr3 33012549 33012604 -194511974 - Charlie8 DNA MER1_type -2228 189 135 283 261 37 90 chr3 33012741 33012875 -194511703 - Charlie8 DNA MER1_type -2290 127 1 968 256 58 0 chr3 33013359 33013601 -194510977 - MIR SINE MIR 0 262 7 1260 156 51 78 chr3 33013972 33014051 -194510527 - MER33 DNA MER1_type -2261 324 244 2477 71 3 0 chr3 33014051 33014361 -194510217 - AluY SINE Alu 0 311 1 1260 156 51 78 chr3 33014361 33014614 -194509964 - MER33 DNA MER1_type -2341 244 1 21 71 0 0 chr3 33015026 33015068 -194509510 + AT_rich Low_complexity Low_complexity 1 42 0 1469 184 103 3 chr3 33015999 33016309 -194508269 + MER58B DNA MER1_type 1 341 0 220 266 94 16 chr3 33018019 33018083 -194506495 - L2 LINE L2 -3 3269 3201 24 67 0 0 chr3 33022216 33022261 -194502317 + AT_rich Low_complexity Low_complexity 1 45 0 767 171 17 97 chr3 33023100 33023171 -194501407 - MER45A DNA AcHobo -1405 176 101 1943 141 3 13 chr3 33023171 33023470 -194501108 + AluSq SINE Alu 1 296 -17 767 171 17 97 chr3 33023470 33023573 -194501005 - MER45A DNA AcHobo -1480 101 16 22 35 0 0 chr3 33024496 33024525 -194500053 + AT_rich Low_complexity Low_complexity 1 29 0 465 19 0 0 chr3 33025764 33025818 -194498760 + (CA)n Simple_repeat Simple_repeat 2 55 0 623 263 80 10 chr3 33026415 33026626 -194497952 - MIR SINE MIR 0 262 40 2240 70 11 3 chr3 33028409 33028719 -194495859 - AluSp SINE Alu 0 312 1 291 299 86 32 chr3 33029073 33029260 -194495318 - MIR3 SINE MIR -6 202 6 589 287 111 21 chr3 33029403 33029790 -194494788 - MER113 DNA MER1_type? -47 474 53 912 183 21 83 chr3 33031142 33031431 -194493147 - LTR37B LTR ERV1 0 468 198 319 267 29 9 chr3 33031489 33031594 -194492984 - LTR37B LTR ERV1 -293 175 69 1066 235 0 0 chr3 33031599 33031803 -194492775 + MER3 DNA MER1_type 6 209 0 275 263 13 0 chr3 33031803 33031872 -194492706 - LTR37B LTR ERV1 -392 76 7 2167 109 6 37 chr3 33031987 33032309 -194492269 - AluSx SINE Alu 0 312 1 268 280 20 70 chr3 33034364 33034464 -194490114 + MLT1L LTR MaLR 437 531 -84 411 318 31 51 chr3 33035344 33035539 -194489039 - MIR3 SINE MIR 0 208 18 1177 292 67 43 chr3 33035598 33036105 -194488473 - MLT1K LTR MaLR 0 588 70 679 235 22 123 chr3 33036246 33036301 -194488277 - MIR SINE MIR 0 262 203 2010 81 55 68 chr3 33036301 33036609 -194487969 - AluSq SINE Alu -9 304 1 679 235 22 123 chr3 33036609 33036821 -194487757 - MIR SINE MIR -59 203 22 1306 101 0 0 chr3 33037639 33037807 -194486771 + AluSg/x SINE Alu 139 306 -6 1684 170 0 33 chr3 33037854 33038160 -194486418 + AluJb SINE Alu 1 296 -16 824 245 13 0 chr3 33038165 33038320 -194486258 - MER58A DNA MER1_type 0 157 1 225 356 58 0 chr3 33038681 33038768 -194485810 + L2 LINE L2 3140 3231 -41 22 0 0 0 chr3 33040421 33040443 -194484135 + AT_rich Low_complexity Low_complexity 1 22 0 346 352 57 12 chr3 33040632 33040879 -194483699 + MIR SINE MIR 1 258 -4 232 224 0 0 chr3 33041673 33041722 -194482856 - MIR SINE MIR -139 123 75 2064 126 0 7 chr3 33041872 33042166 -194482412 + AluSx SINE Alu 1 292 -20 520 284 50 23 chr3 33042210 33042428 -194482150 - MER113 DNA MER1_type? 0 521 298 594 199 147 6 chr3 33042467 33042623 -194481955 - MER58A DNA MER1_type 0 224 47 2481 70 3 6 chr3 33042649 33042961 -194481617 - AluY SINE Alu 0 311 1 632 204 94 25 chr3 33042966 33043167 -194481411 - MER113 DNA MER1_type? -306 215 1 814 232 76 31 chr3 33043469 33043693 -194480885 + MIR SINE MIR 8 241 -21 187 336 93 21 chr3 33044029 33044169 -194480409 + L2 LINE L2 2827 2976 -337 1853 130 34 31 chr3 33044538 33044891 -194479687 + AluSg SINE Alu 1 354 0 225 0 0 0 chr3 33045192 33045217 -194479361 + (CA)n Simple_repeat Simple_repeat 2 26 0 427 210 92 8 chr3 33045217 33045336 -194479242 - MER104 DNA Tc2 -5 175 47 1994 238 66 29 chr3 33046763 33047355 -194477223 + L1ME3 LINE L1 5448 6061 -101 1980 175 0 0 chr3 33048148 33048457 -194476121 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 33048467 33048488 -194476090 + AT_rich Low_complexity Low_complexity 1 21 0 4376 187 39 19 chr3 33048814 33049698 -194474880 + L1MB7 LINE L1 5283 6183 -1 2264 234 70 37 chr3 33050320 33051068 -194473510 - L1ME2 LINE L1 -9 6155 5384 21 0 0 0 chr3 33051068 33051089 -194473489 + AT_rich Low_complexity Low_complexity 1 21 0 1208 179 61 5 chr3 33051519 33051731 -194472847 + MER58A DNA MER1_type 1 224 0 406 268 105 13 chr3 33052090 33052243 -194472335 - MARNA DNA Mariner -329 257 91 428 279 58 13 chr3 33053163 33053317 -194471261 + MIR3 SINE MIR 21 181 -27 281 237 0 0 chr3 33053588 33053647 -194470931 - MIR SINE MIR -114 148 90 232 326 21 42 chr3 33054965 33055109 -194469469 - MIR SINE MIR -67 141 3 350 147 15 0 chr3 33056126 33056194 -194468384 + CT-rich Low_complexity Low_complexity 3 71 0 2136 123 3 19 chr3 33056242 33056559 -194468019 - AluSx SINE Alu 0 312 1 670 257 38 105 chr3 33057044 33057464 -194467114 - L2 LINE L2 0 3313 2922 596 319 112 50 chr3 33057443 33058089 -194466489 - L2 LINE L2 -40 3232 2543 * 317 129 0 16 chr3 33058180 33058242 -194466336 + (TGGA)n Simple_repeat Simple_repeat 3 63 0 352 284 173 19 chr3 33058591 33058753 -194465825 - MER5A DNA MER1_type 0 189 3 377 222 158 103 chr3 33060600 33061019 -194463559 + L1ME1 LINE L1 5507 5948 -222 638 242 13 0 chr3 33061159 33061312 -194463266 + L1ME1 LINE L1 6010 6164 -2 27 0 0 0 chr3 33061349 33061376 -194463202 + AT_rich Low_complexity Low_complexity 1 27 0 187 340 31 0 chr3 33061433 33061530 -194463048 + L2 LINE L2 2734 2833 -481 2043 179 50 64 chr3 33061862 33062360 -194462218 - MLT1D LTR MaLR -10 495 5 955 257 147 47 chr3 33062475 33062876 -194461702 - LTR16C LTR ERVL -17 474 34 631 52 10 21 chr3 33062876 33062973 -194461605 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 186 103 0 0 chr3 33062980 33063009 -194461569 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 33063247 33063268 -194461310 + AT_rich Low_complexity Low_complexity 1 21 0 491 301 119 35 chr3 33065675 33065901 -194458677 + MIR SINE MIR 18 262 0 347 263 0 137 chr3 33066850 33066938 -194457640 + MIR SINE MIR 43 97 -165 2517 72 16 3 chr3 33066938 33067259 -194457319 - L1PA7 LINE L1 -1 6153 5829 347 263 0 137 chr3 33067259 33067345 -194457233 + MIR SINE MIR 97 193 -69 416 163 12 81 chr3 33067408 33067494 -194457084 + Tigger5 DNA MER2_type 2237 2316 -7 462 229 16 25 chr3 33067720 33067842 -194456736 - MIR SINE MIR -63 145 25 714 218 249 16 chr3 33070020 33070277 -194454301 + MER5C DNA MER1_type 2 318 -6 253 324 165 39 chr3 33070842 33071024 -194453554 - L3 LINE CR1 -222 1355 1151 285 217 0 0 chr3 33071060 33071143 -194453435 + T-rich Low_complexity Low_complexity 1 83 0 550 271 57 21 chr3 33071154 33071346 -194453232 - L3 LINE CR1 -441 1136 938 274 218 36 0 chr3 33071346 33071401 -194453177 + Tigger2 DNA MER2_type 1 57 -2661 1230 206 19 0 chr3 33071405 33071614 -194452964 - MER8 DNA MER2_type -26 213 1 1016 200 0 11 chr3 33072528 33072703 -194451875 + MER58A DNA MER1_type 1 173 -51 255 243 125 44 chr3 33072889 33073025 -194451553 + L2 LINE L2 3167 3313 0 221 294 0 0 chr3 33073505 33073556 -194451022 + polypurine Low_complexity Low_complexity 4 54 0 369 217 84 133 chr3 33073587 33073790 -194450788 + MER117 DNA MER1_type 2 194 -3 393 263 247 0 chr3 33074307 33074497 -194450081 - MIR SINE MIR -13 249 13 277 235 96 2 chr3 33074537 33074695 -194449883 + MER20 DNA MER1_type 11 205 -14 646 290 117 25 chr3 33075442 33075877 -194448701 + L1ME4a LINE L1 5631 6105 -16 1672 140 70 7 chr3 33076472 33076769 -194447809 - AluSx SINE Alu 0 314 1 742 270 120 54 chr3 33077276 33077988 -194446590 - L2 LINE L2 -2 3311 2552 22 0 0 0 chr3 33078308 33078330 -194446248 + AT_rich Low_complexity Low_complexity 1 22 0 288 232 73 12 chr3 33078382 33078464 -194446114 - L1ME4a LINE L1 -239 5882 5796 231 146 0 0 chr3 33079238 33079279 -194445299 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 180 0 0 0 chr3 33080165 33080185 -194444393 + (A)n Simple_repeat Simple_repeat 1 20 0 600 336 133 18 chr3 33080861 33081251 -194443327 + L3 LINE CR1 747 1181 -396 253 308 85 27 chr3 33081305 33081458 -194443120 - MIR SINE MIR -79 129 22 271 118 0 39 chr3 33081491 33081542 -194443036 + MIR3 SINE MIR 155 203 -5 1982 151 21 78 chr3 33081812 33082141 -194442437 - MLT1A1 LTR MaLR 0 365 60 2496 103 103 0 chr3 33082141 33082500 -194442078 - L1PA10 LINE L1 -5 6163 5768 1982 151 21 78 chr3 33082500 33082555 -194442023 - MLT1A1 LTR MaLR -305 60 3 312 309 135 35 chr3 33082916 33083198 -194441380 - L2 LINE L2 -787 2527 2218 392 266 87 17 chr3 33084265 33084438 -194440140 + L1MC5 LINE L1 7727 7911 -50 194 309 0 0 chr3 33085359 33085414 -194439164 + L2 LINE L2 2927 2981 -332 970 229 23 14 chr3 33085891 33086109 -194438469 + MER58A DNA MER1_type 5 224 0 214 268 85 12 chr3 33086111 33086193 -194438385 + L2 LINE L2 3150 3237 -35 2544 164 33 19 chr3 33086206 33086627 -194437951 - MSTC LTR MaLR -1 427 1 183 80 0 0 chr3 33086657 33086682 -194437896 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 905 274 62 15 chr3 33086726 33087066 -194437512 + L2 LINE L2 2946 3301 -12 503 271 90 32 chr3 33088083 33088271 -194436307 + MIR SINE MIR 31 229 -33 414 0 0 0 chr3 33088665 33088711 -194435867 + (CA)n Simple_repeat Simple_repeat 1 46 0 277 284 69 20 chr3 33088715 33088817 -194435761 + L2 LINE L2 3205 3311 -2 229 361 0 0 chr3 33090747 33090830 -194433748 - L2 LINE L2 -3 3310 3228 192 368 125 14 chr3 33091013 33091157 -194433421 + L2 LINE L2 3140 3299 -14 482 250 0 11 chr3 33091177 33091357 -194433221 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 195 167 0 0 chr3 33091386 33091428 -194433150 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 100 0 0 chr3 33091478 33091508 -194433070 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 33092224 33092278 -194432300 + CT-rich Low_complexity Low_complexity 4 57 0 413 324 7 35 chr3 33092553 33092695 -194431883 - MIR SINE MIR -114 148 11 413 213 191 100 chr3 33092923 33093153 -194431425 - MLT1H LTR MaLR -13 536 286 190 275 134 74 chr3 33093665 33093814 -194430764 + L3b LINE CR1 1316 1473 -110 223 353 49 25 chr3 33096156 33096278 -194428300 - L2 LINE L2 -6 3266 3142 645 282 18 0 chr3 33096697 33096861 -194427717 + MIR SINE MIR 17 190 -63 308 111 0 0 chr3 33097078 33097123 -194427455 + L2 LINE L2 3269 3313 0 209 322 35 23 chr3 33097408 33097495 -194427083 - MIR SINE MIR -86 122 35 182 257 57 29 chr3 33098413 33098483 -194426095 + MIR SINE MIR 114 185 -77 2377 210 33 24 chr3 33098676 33099256 -194425322 - L1MB7 LINE L1 -20 6164 5580 397 235 78 65 chr3 33099800 33099953 -194424625 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 33100025 33100091 -194424487 + CT-rich Low_complexity Low_complexity 2 66 0 186 197 45 15 chr3 33100511 33100577 -194424001 - L2 LINE L2 -24 3248 3181 21 36 0 0 chr3 33100677 33100705 -194423873 + AT_rich Low_complexity Low_complexity 1 28 0 1733 153 10 24 chr3 33102097 33102392 -194422186 + AluJo SINE Alu 6 296 -16 255 103 0 0 chr3 33102842 33102881 -194421697 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1071 254 47 0 chr3 33103180 33103393 -194421185 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr3 33103973 33103994 -194420584 + AT_rich Low_complexity Low_complexity 1 21 0 267 220 9 18 chr3 33105024 33105133 -194419445 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 207 100 0 0 chr3 33105183 33105213 -194419365 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 33105929 33105983 -194418595 + CT-rich Low_complexity Low_complexity 4 57 0 341 345 7 35 chr3 33106258 33106400 -194418178 - MIR SINE MIR -114 148 11 473 201 154 69 chr3 33106614 33106859 -194417719 - MLT1H LTR MaLR 0 536 286 200 269 134 74 chr3 33107371 33107520 -194417058 + L3b LINE CR1 1316 1473 -110 187 353 49 25 chr3 33109861 33109983 -194414595 - L2 LINE L2 -6 3266 3142 603 280 7 0 chr3 33110423 33110566 -194414012 + MIR SINE MIR 47 190 -72 294 111 0 0 chr3 33110783 33110828 -194413750 + L2 LINE L2 3269 3313 0 202 245 20 0 chr3 33111151 33111200 -194413378 - MIR SINE MIR -124 84 35 2448 207 33 22 chr3 33112385 33112964 -194411614 - L1MB7 LINE L1 -20 6164 5580 353 235 78 65 chr3 33113511 33113664 -194410914 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 33113736 33113802 -194410776 + CT-rich Low_complexity Low_complexity 2 66 0 21 36 0 0 chr3 33114389 33114417 -194410161 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr3 33115224 33115264 -194409314 + (CA)n Simple_repeat Simple_repeat 2 41 0 237 288 120 8 chr3 33115400 33115525 -194409053 - L2 LINE L2 0 3313 3175 189 244 0 0 chr3 33115960 33116001 -194408577 + L2 LINE L2 3228 3268 -4 414 220 240 0 chr3 33116483 33116633 -194407945 - MER5A DNA MER1_type 0 189 4 377 284 118 6 chr3 33116890 33117059 -194407519 + MIR SINE MIR 21 208 -54 799 299 20 4 chr3 33117564 33117808 -194406770 - MIR SINE MIR -11 251 4 658 223 139 14 chr3 33118305 33118520 -194406058 + LTR16C LTR ERVL 231 472 -19 420 318 52 0 chr3 33119466 33119639 -194404939 + MIR SINE MIR 52 233 -29 284 258 54 11 chr3 33120152 33120245 -194404333 + MIR SINE MIR 34 130 -78 1617 147 130 7 chr3 33120281 33120581 -194403997 - MER1B DNA MER1_type 0 337 1 1510 178 82 79 chr3 33120629 33121095 -194403483 - MLT1C LTR MaLR 0 467 1 504 311 23 14 chr3 33122410 33122629 -194401949 + MIR SINE MIR 37 257 -5 398 240 87 59 chr3 33124192 33124446 -194400132 - L1MC5 LINE L1 -192 7769 7509 1656 229 28 16 chr3 33124454 33124877 -194399701 - L1ME1 LINE L1 -5 6161 5734 1105 230 87 38 chr3 33124874 33125300 -194399278 - L1MC5 LINE L1 -442 7519 7073 * 2246 105 0 3 chr3 33125335 33125631 -194398947 + AluSg SINE Alu 1 295 -15 283 101 14 87 chr3 33126796 33126836 -194397742 - MIR SINE MIR -115 147 112 1449 199 70 22 chr3 33126836 33127193 -194397385 + MLT1A2 LTR MaLR 1 374 0 283 101 14 87 chr3 33127193 33127221 -194397357 - MIR SINE MIR -150 112 84 310 282 80 37 chr3 33128039 33128202 -194396376 + MIR SINE MIR 84 253 -9 208 185 37 19 chr3 33129366 33129420 -194395158 + CT-rich Low_complexity Low_complexity 2 56 0 378 269 126 85 chr3 33129420 33130010 -194394568 - L2 LINE L2 -5 3308 2684 805 262 34 0 chr3 33130268 33130501 -194394077 + MIR SINE MIR 22 262 0 211 235 0 0 chr3 33130525 33130576 -194394002 - MIR SINE MIR -103 159 109 398 280 0 0 chr3 33131050 33131150 -194393428 - MIR SINE MIR -141 121 22 341 264 86 43 chr3 33131361 33131501 -194393077 + L2 LINE L2 2909 3054 -218 742 259 93 5 chr3 33132226 33132442 -194392136 + MIR SINE MIR 8 242 -20 838 211 78 16 chr3 33132533 33132789 -194391789 + MER33 DNA MER1_type 1 272 -52 436 284 30 37 chr3 33133201 33133335 -194391243 - L2 LINE L2 -1 3312 3180 1107 240 58 27 chr3 33133343 33133741 -194390837 + L1ME3 LINE L1 5738 6143 -21 2737 194 30 13 chr3 33133741 33134298 -194390280 - MLT1F1 LTR MaLR 0 567 1 1107 240 58 27 chr3 33134298 33134319 -194390259 + L1ME3 LINE L1 6143 6162 -2 427 296 155 30 chr3 33134403 33134800 -194389778 - L2 LINE L2 -276 3037 2585 1540 155 8 4 chr3 33135779 33136030 -194388548 - AluSx SINE Alu -28 284 33 283 303 129 19 chr3 33136095 33136250 -194388328 + MIR3 SINE MIR 20 191 -17 451 294 89 24 chr3 33138145 33138369 -194386209 + MIR SINE MIR 14 259 -3 381 290 19 9 chr3 33138372 33138479 -194386099 + L2 LINE L2 3153 3260 -12 730 216 122 0 chr3 33140839 33141020 -194383558 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chr3 33143153 33143175 -194381403 + AT_rich Low_complexity Low_complexity 1 22 0 278 176 99 12 chr3 33145121 33145281 -194379297 - MER5C DNA MER1_type -42 282 45 237 300 0 0 chr3 33146106 33146166 -194378412 + MIR3 SINE MIR 101 160 -48 2116 100 24 7 chr3 33146578 33146867 -194377711 + AluSq SINE Alu 1 294 -19 2144 134 0 3 chr3 33147356 33147669 -194376909 + AluSx SINE Alu 1 312 0 2080 144 0 13 chr3 33148472 33148785 -194375793 - AluSx SINE Alu -3 309 1 766 309 81 18 chr3 33148873 33149145 -194375433 - LTR16C LTR ERVL -41 450 162 21 0 0 0 chr3 33151428 33151449 -194373129 + AT_rich Low_complexity Low_complexity 1 21 0 1004 254 47 0 chr3 33152029 33152242 -194372336 + MER58A DNA MER1_type 1 223 -1 255 103 0 0 chr3 33152541 33152580 -194371998 + (CAT)n Simple_repeat Simple_repeat 2 40 0 1747 153 10 24 chr3 33153030 33153325 -194371253 - AluJo SINE Alu -16 296 6 811 107 156 0 chr3 33155320 33155442 -194369136 + AluSp/q SINE Alu 157 297 -16 253 252 36 54 chr3 33155654 33155765 -194368813 - L2 LINE L2 -218 3054 2946 395 351 153 8 chr3 33156200 33156468 -194368110 - L2 LINE L2 -856 2458 2152 180 0 0 0 chr3 33157143 33157163 -194367415 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2437 74 3 6 chr3 33157173 33157484 -194367094 - AluY SINE Alu -1 310 1 23 33 0 0 chr3 33157684 33157714 -194366864 + AT_rich Low_complexity Low_complexity 1 30 0 217 253 13 51 chr3 33158158 33158237 -194366341 + MIR3 SINE MIR 123 198 -10 181 311 100 11 chr3 33158595 33158685 -194365893 + MIR SINE MIR 1 98 -164 1968 155 17 3 chr3 33158692 33158989 -194365589 + AluJb SINE Alu 1 301 -11 186 211 0 26 chr3 33158991 33159029 -194365549 - L2 LINE L2 -14 3299 3263 226 220 0 0 chr3 33159043 33159093 -194365485 - MIR SINE MIR -115 147 98 345 323 81 19 chr3 33159109 33159270 -194365308 + MIR SINE MIR 90 260 -2 26 30 0 0 chr3 33159588 33159621 -194364957 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 33160000 33160022 -194364556 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 33160734 33160756 -194363822 + AT_rich Low_complexity Low_complexity 1 22 0 337 246 0 0 chr3 33163092 33163153 -194361425 + tRNA-Lys-AAA tRNA tRNA 5 65 -11 1801 154 14 3 chr3 33166608 33166901 -194357677 - AluJb SINE Alu -16 296 1 2187 126 0 0 chr3 33167065 33167374 -194357204 + AluSx SINE Alu 1 309 -3 201 324 15 0 chr3 33167514 33167582 -194356996 + L2 LINE L2 3241 3309 -4 1991 101 10 7 chr3 33167998 33168286 -194356292 - AluSq SINE Alu -11 302 14 997 113 0 0 chr3 33168303 33168436 -194356142 - AluSp SINE Alu -180 133 1 264 365 122 17 chr3 33170598 33170779 -194353799 + MIR SINE MIR 12 211 -51 969 61 88 218 chr3 33170810 33171071 -194353507 - MER30 DNA MER1_type 0 230 4 30 27 0 0 chr3 33172251 33172288 -194352290 + AT_rich Low_complexity Low_complexity 1 37 0 1254 198 69 116 chr3 33172727 33173145 -194351433 + L1MC5 LINE L1 7233 7669 -292 1598 165 62 7 chr3 33173145 33173436 -194351142 + AluSx SINE Alu 1 307 -5 1254 198 69 116 chr3 33173436 33173551 -194351027 + L1MC5 LINE L1 7669 7647 -314 1864 151 3 3 chr3 33173551 33173835 -194350743 + AluJb SINE Alu 1 284 -28 1254 198 69 116 chr3 33173835 33174021 -194350557 + L1MC5 LINE L1 7646 7839 -122 23 0 0 0 chr3 33175473 33175496 -194349082 + AT_rich Low_complexity Low_complexity 1 23 0 219 294 0 0 chr3 33175617 33175668 -194348910 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr3 33175959 33175988 -194348590 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 33176576 33176598 -194347980 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 33178325 33178352 -194346226 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1580 253 106 28 chr3 33178397 33178926 -194345652 - MER21B LTR ERV1 -105 758 189 22 70 0 0 chr3 33178990 33179033 -194345545 + AT_rich Low_complexity Low_complexity 1 43 0 1424 276 68 72 chr3 33179630 33181147 -194343431 + L1MCa LINE L1 46 1457 -4851 297 218 64 18 chr3 33181146 33181256 -194343322 + L1MCa LINE L1 2543 2657 -3907 * 1048 164 16 6 chr3 33181763 33181946 -194342632 - MER2 DNA MER2_type -139 206 22 26 50 0 0 chr3 33182145 33182185 -194342393 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr3 33182210 33182239 -194342339 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 33183044 33183068 -194341510 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr3 33183671 33183708 -194340870 + (A)n Simple_repeat Simple_repeat 1 37 0 342 0 0 0 chr3 33184780 33184818 -194339760 + (A)n Simple_repeat Simple_repeat 1 38 0 261 238 79 101 chr3 33185432 33185659 -194338919 + L1ME4a LINE L1 5724 5945 -176 2260 94 3 0 chr3 33185773 33186071 -194338507 - AluSg SINE Alu -11 299 1 1950 123 23 10 chr3 33187218 33187402 -194337176 - AluJb SINE Alu -7 305 114 212 0 36 0 chr3 33187402 33187430 -194337148 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1950 123 23 10 chr3 33187430 33187546 -194337032 - AluJb SINE Alu -198 114 1 534 277 137 12 chr3 33190591 33190804 -194333774 + MIR SINE MIR 4 238 -24 1876 123 11 0 chr3 33190884 33191153 -194333425 + AluSx SINE Alu 3 274 -38 2138 80 3 51 chr3 33191256 33191569 -194333009 - AluY SINE Alu -13 298 1 2104 118 0 35 chr3 33192215 33192528 -194332050 - AluSx SINE Alu -8 304 3 27 73 0 0 chr3 33193345 33193400 -194331178 + AT_rich Low_complexity Low_complexity 1 55 0 308 254 204 21 chr3 33194300 33194442 -194330136 + L1MB2 LINE L1 413 580 -5723 3092 235 26 38 chr3 33194850 33195034 -194329544 + L1MB2 LINE L1 801 986 -5317 1763 164 3 20 chr3 33195034 33195339 -194329239 + AluJb SINE Alu 1 300 -12 3092 235 26 38 chr3 33195339 33196259 -194328319 + L1MB2 LINE L1 986 1787 -4516 9008 112 9 0 chr3 33196288 33197572 -194327006 - HSMAR2 DNA Mariner 0 1302 7 11044 205 59 16 chr3 33197692 33198043 -194326535 + L1MB2 LINE L1 2030 2364 -4043 2064 125 7 3 chr3 33198043 33198339 -194326239 + AluSx SINE Alu 1 297 -15 11044 205 59 16 chr3 33198339 33199861 -194324717 + L1MB2 LINE L1 2364 3818 -2589 1455 168 3 107 chr3 33199861 33200188 -194324390 - AluJb SINE Alu -9 293 1 11044 205 59 16 chr3 33200188 33202500 -194322078 + L1MB2 LINE L1 3818 6406 -1 488 196 18 36 chr3 33202779 33202891 -194321687 + FLAM_A SINE Alu 4 113 -29 239 79 26 0 chr3 33202895 33202933 -194321645 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2146 72 3 14 chr3 33204238 33204528 -194320050 + AluYa5 SINE Alu 1 287 -24 29 0 0 0 chr3 33204528 33204557 -194320021 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr3 33204899 33204962 -194319616 + AT_rich Low_complexity Low_complexity 1 63 0 4408 215 34 18 chr3 33205691 33206725 -194317853 - L1M2 LINE L1 -5447 1402 353 369 203 14 0 chr3 33206826 33206900 -194317678 + L1MB7 LINE L1 4052 4126 -2020 2954 226 23 22 chr3 33206937 33207672 -194316906 + L1MB7 LINE L1 5442 6177 -7 2559 127 5 24 chr3 33208181 33208600 -194315978 - L1PA15 LINE L1 -5 6160 5750 597 304 100 5 chr3 33209404 33209624 -194314954 - MIR SINE MIR -19 243 3 240 231 264 25 chr3 33209795 33209916 -194314662 + MIR SINE MIR 17 166 -96 309 343 30 42 chr3 33210428 33210594 -194313984 - L2 LINE L2 -242 3030 2867 489 215 114 55 chr3 33210814 33210951 -194313627 + L1MC5 LINE L1 7676 7834 -127 2508 57 7 0 chr3 33210951 33211250 -194313328 - AluSp SINE Alu -11 302 2 489 215 114 55 chr3 33211250 33211349 -194313229 + L1MC5 LINE L1 7834 7926 -35 21 0 0 0 chr3 33211603 33211624 -194312954 + AT_rich Low_complexity Low_complexity 1 21 0 324 276 296 10 chr3 33212063 33212266 -194312312 - MIR SINE MIR 0 262 2 21 0 0 0 chr3 33214123 33214144 -194310434 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 33214879 33214900 -194309678 + GC_rich Low_complexity Low_complexity 1 21 0 208 143 29 0 chr3 33215224 33215259 -194309319 + G-rich Low_complexity Low_complexity 4 39 0 202 229 145 36 chr3 33215834 33215917 -194308661 - L2 LINE L2 -14 3299 3208 2118 116 0 7 chr3 33216541 33216843 -194307735 - AluSx SINE Alu -12 300 1 1862 109 0 0 chr3 33217243 33217490 -194307088 + AluSx SINE Alu 54 300 -12 1779 111 33 0 chr3 33217906 33218149 -194306429 + AluSx SINE Alu 37 287 -25 270 196 0 0 chr3 33219395 33219441 -194305137 + Alu SINE Alu 1 46 -254 215 205 0 0 chr3 33219790 33219829 -194304749 + L2 LINE L2 3263 3301 -12 404 283 103 41 chr3 33220265 33220418 -194304160 - MIR SINE MIR -12 250 74 2153 126 3 3 chr3 33220418 33220719 -194303859 + AluSx SINE Alu 1 301 -11 404 283 103 41 chr3 33220719 33220797 -194303781 - MIR SINE MIR -188 74 2 2117 98 6 44 chr3 33221124 33221440 -194303138 - AluSx SINE Alu -8 304 1 281 173 0 80 chr3 33221898 33221973 -194302605 - MER103 DNA DNA -57 109 41 2105 117 0 0 chr3 33222078 33222351 -194302227 + AluSx SINE Alu 3 275 -37 219 36 0 0 chr3 33222355 33222383 -194302195 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 335 247 22 11 chr3 33222423 33222512 -194302066 - L1ME4a LINE L1 -65 6056 5967 515 245 25 32 chr3 33222562 33222739 -194301839 + L1ME3A LINE L1 5412 5597 -565 333 260 0 0 chr3 33222737 33222814 -194301764 + L1ME3A LINE L1 5561 5637 -533 * 8292 173 63 43 chr3 33222818 33224494 -194300084 - MER52A LTR ERV1 0 1755 47 1191 223 157 54 chr3 33224831 33225130 -194299448 + L1ME3A LINE L1 5619 5886 -284 531 0 0 0 chr3 33225130 33225189 -194299389 + (TA)n Simple_repeat Simple_repeat 1 59 0 2116 118 3 3 chr3 33225191 33225480 -194299098 - AluSq SINE Alu -23 290 2 1191 223 157 54 chr3 33225480 33225674 -194298904 + L1ME3A LINE L1 5886 6165 -5 665 254 63 0 chr3 33225679 33225868 -194298710 + HsTC2 DNA Tc2 1524 1724 -174 249 274 49 10 chr3 33226040 33226142 -194298436 - MIR SINE MIR -10 252 147 792 192 45 98 chr3 33226517 33226741 -194297837 - MER20 DNA MER1_type -7 212 1 549 204 49 35 chr3 33226802 33226944 -194297634 - MIR SINE MIR -103 159 16 346 332 107 11 chr3 33227520 33227707 -194296871 - L2 LINE L2 -1 3312 3108 2088 116 7 3 chr3 33228031 33228325 -194296253 - AluSx SINE Alu -17 295 1 560 124 0 77 chr3 33229411 33229605 -194294973 + (AGGGGG)n Simple_repeat Simple_repeat 2 180 0 23 33 0 0 chr3 33230063 33230093 -194294485 + GC_rich Low_complexity Low_complexity 1 30 0 367 275 19 12 chr3 33230106 33230266 -194294312 + G-rich Low_complexity Low_complexity 2 162 0 245 289 23 16 chr3 33230434 33230562 -194294016 + GA-rich Low_complexity Low_complexity 2 130 0 2607 52 0 0 chr3 33231088 33231397 -194293181 - AluY SINE Alu -2 309 1 201 39 0 0 chr3 33231460 33231486 -194293092 + (CAA)n Simple_repeat Simple_repeat 3 28 0 220 122 0 24 chr3 33231890 33231931 -194292647 + (ATTTG)n Simple_repeat Simple_repeat 4 43 0 278 341 32 24 chr3 33232302 33232425 -194292153 - MIR SINE MIR -119 143 20 810 198 121 13 chr3 33232611 33232768 -194291810 - FAM SINE Alu -1 174 1 268 198 210 12 chr3 33233040 33233121 -194291457 + MER103 DNA DNA 69 165 -1 4416 187 57 11 chr3 33233245 33233599 -194290979 + L1MB8 LINE L1 4350 4686 -1492 2499 60 0 0 chr3 33233599 33233898 -194290680 + AluY SINE Alu 1 299 -12 4416 187 57 11 chr3 33233898 33235298 -194289280 + L1MB8 LINE L1 4686 6172 -6 247 158 0 0 chr3 33236606 33236644 -194287934 - L2 LINE L2 0 3272 3235 507 248 183 0 chr3 33238418 33238555 -194286023 + MER5A DNA MER1_type 27 188 -1 198 103 0 0 chr3 33238783 33238812 -194285766 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 525 282 152 19 chr3 33239160 33239536 -194285042 + L2 LINE L2 1959 2384 -930 * 880 250 108 60 chr3 33239519 33239773 -194284805 - L2 LINE L2 -5 3308 3068 1458 178 33 23 chr3 33239773 33240077 -194284501 + AluJo SINE Alu 5 311 -1 880 250 108 60 chr3 33240077 33240491 -194284087 - L2 LINE L2 -245 3068 2709 2080 115 7 0 chr3 33240763 33241041 -194283537 - AluSx SINE Alu -16 296 17 206 274 32 0 chr3 33241286 33241348 -194283230 - MIR SINE MIR -64 144 81 250 201 44 11 chr3 33242659 33242733 -194281845 + MIR SINE MIR 36 115 -93 347 24 0 0 chr3 33243349 33243391 -194281187 - L1P4 LINE L1 -643 5531 5490 6534 102 4 22 chr3 33243726 33245221 -194279357 - L1PA12 LINE L1 0 6168 4697 2195 135 0 0 chr3 33245221 33245532 -194279046 + AluY SINE Alu 1 311 0 6534 102 4 22 chr3 33245532 33245746 -194278832 - L1PA12 LINE L1 -1471 4697 4481 1759 155 0 4 chr3 33245781 33246052 -194278526 + AluJb SINE Alu 24 293 -19 192 378 37 0 chr3 33246614 33246696 -194277882 + MIR SINE MIR 54 138 -70 1830 166 7 10 chr3 33246789 33247097 -194277481 - AluJb SINE Alu -5 307 1 21 0 0 0 chr3 33247249 33247270 -194277308 + AT_rich Low_complexity Low_complexity 1 21 0 535 257 139 20 chr3 33247470 33247672 -194276906 - MIR SINE MIR -17 245 20 253 183 0 37 chr3 33247783 33247865 -194276713 + GA-rich Low_complexity Low_complexity 3 81 0 4180 44 0 0 chr3 33248903 33249381 -194275197 - L1PA3 LINE L1 -1 6154 5677 22 0 0 0 chr3 33249393 33249415 -194275163 + AT_rich Low_complexity Low_complexity 1 22 0 479 307 7 0 chr3 33249478 33249631 -194274947 - ERVL LTR ERVL -384 5380 5227 396 371 60 22 chr3 33249671 33250040 -194274538 - ERVL LTR ERVL -636 5128 4746 15839 30 0 0 chr3 33250114 33252732 -194271846 - L1HS LINE L1 0 6155 3538 2105 107 4 0 chr3 33254628 33254936 -194269642 + AluSx SINE Alu 1 309 0 375 249 183 52 chr3 33255421 33255710 -194268868 + L1ME4a LINE L1 5774 6100 -21 25 51 0 0 chr3 33255729 33255768 -194268810 + AT_rich Low_complexity Low_complexity 1 39 0 330 316 101 0 chr3 33256032 33256200 -194268378 - MIR SINE MIR 0 262 78 414 224 60 90 chr3 33256691 33256892 -194267686 + L2 LINE L2 3119 3313 0 198 337 20 20 chr3 33257806 33257904 -194266674 - L2 LINE L2 -1435 1879 1782 267 235 82 24 chr3 33258156 33258241 -194266337 + MIR3 SINE MIR 70 159 -49 247 331 55 50 chr3 33258242 33258423 -194266155 - MER5A DNA MER1_type 0 189 8 279 0 0 0 chr3 33259564 33259595 -194264983 + (T)n Simple_repeat Simple_repeat 1 31 0 774 266 121 35 chr3 33259740 33260433 -194264145 + L1MC4a LINE L1 5174 5398 -748 1731 137 108 4 chr3 33260565 33260842 -194263736 + AluJb SINE Alu 1 306 -6 2136 126 51 46 chr3 33260854 33261037 -194263541 + THE1C LTR MaLR 1 182 -193 2022 102 42 0 chr3 33261037 33261320 -194263258 - AluSx SINE Alu -17 295 1 2136 126 51 46 chr3 33261320 33261509 -194263069 + THE1C LTR MaLR 182 375 0 420 234 75 80 chr3 33262351 33262552 -194262026 - Charlie8 DNA MER1_type -2129 288 89 345 282 94 29 chr3 33262599 33262844 -194261734 + L1MC4a LINE L1 5794 6054 -1754 320 261 114 61 chr3 33263197 33263391 -194261187 + HAL1 LINE L1 851 1062 -1445 2331 52 10 42 chr3 33263391 33263699 -194260879 + AluY SINE Alu 1 298 -13 320 261 114 61 chr3 33263699 33263749 -194260829 + HAL1 LINE L1 1062 1108 -1399 322 211 110 8 chr3 33263825 33263952 -194260626 + L1P5 LINE L1 5332 5468 -686 1241 235 186 20 chr3 33263970 33264426 -194260152 - MLT1F LTR MaLR -10 532 1 369 290 158 6 chr3 33264432 33264666 -194259912 + L1ME LINE L1 5486 5772 -398 344 252 163 8 chr3 33265114 33265237 -194259341 + MIR SINE MIR 118 259 -3 392 281 32 53 chr3 33265712 33265856 -194258722 + MIR3 SINE MIR 56 197 -11 2432 71 0 0 chr3 33266350 33266668 -194257910 + AluY SINE Alu 1 318 0 4329 115 31 0 chr3 33266680 33267367 -194257211 - L1P LINE L1 -1134 5012 4305 6342 91 19 0 chr3 33267367 33268465 -194256113 + L1PA8 LINE L1 5046 6165 -7 719 206 8 0 chr3 33268942 33269073 -194255505 + FLAM_A SINE Alu 1 132 -1 295 261 87 33 chr3 33269224 33269316 -194255262 + L2 LINE L2 3168 3264 -8 23 0 0 0 chr3 33270531 33270554 -194254024 + AT_rich Low_complexity Low_complexity 1 23 0 198 343 0 43 chr3 33271552 33271622 -194252956 + L2 LINE L2 150 216 -3098 1194 181 177 0 chr3 33271761 33272004 -194252574 - AluJo SINE Alu -15 287 2 2483 72 13 0 chr3 33272129 33272436 -194252142 + AluY SINE Alu 1 311 0 2038 142 3 0 chr3 33272594 33272896 -194251682 + AluSx SINE Alu 2 304 -8 180 111 0 0 chr3 33272923 33272950 -194251628 + (TA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr3 33274402 33274428 -194250150 + AT_rich Low_complexity Low_complexity 1 26 0 265 329 79 61 chr3 33275281 33275509 -194249069 + L2 LINE L2 2824 3055 -217 3318 174 92 90 chr3 33275512 33276413 -194248165 + MER21A LTR ERV1 1 903 -28 354 266 38 76 chr3 33276896 33277054 -194247524 - L2 LINE L2 -7 3306 3155 316 326 127 76 chr3 33278091 33278382 -194246196 + L2 LINE L2 2967 3272 0 203 368 23 11 chr3 33278871 33278958 -194245620 + L2 LINE L2 3210 3297 -16 499 136 11 11 chr3 33279117 33279205 -194245373 + AluSp/q SINE Alu 212 299 -14 2056 148 28 52 chr3 33279207 33279327 -194245251 + L1MA4 LINE L1 4996 5117 -1183 2086 68 79 0 chr3 33279327 33279607 -194244971 - AluY SINE Alu -9 302 1 2056 148 28 52 chr3 33279607 33279843 -194244735 + L1MA4 LINE L1 5117 5357 -943 2076 143 3 7 chr3 33279843 33280151 -194244427 + AluSx SINE Alu 1 307 -5 2056 148 28 52 chr3 33280151 33280485 -194244093 + L1MA4 LINE L1 5357 5667 -633 24 91 0 0 chr3 33280498 33280564 -194244014 + AT_rich Low_complexity Low_complexity 1 66 0 5524 159 39 49 chr3 33280566 33280923 -194243655 - L1PB1 LINE L1 0 6867 6508 2024 127 7 3 chr3 33280923 33281215 -194243363 - AluSq SINE Alu -20 293 1 5524 159 39 49 chr3 33281215 33283081 -194241497 - L1PB1 LINE L1 -359 6508 4681 18130 119 75 9 chr3 33283086 33286171 -194238407 - L1PB1 LINE L1 -3570 3292 1 2004 121 0 7 chr3 33286172 33286478 -194238100 + L1MA4 LINE L1 5662 5965 -335 29 0 0 0 chr3 33286497 33286526 -194238052 + AT_rich Low_complexity Low_complexity 1 29 0 1757 168 12 6 chr3 33286528 33286856 -194237722 + L1MA4 LINE L1 5961 6290 -10 543 208 38 0 chr3 33287053 33287159 -194237419 + MER81 DNA DNA 5 114 0 1138 288 35 19 chr3 33287345 33287717 -194236861 + L2 LINE L2 2211 2588 -726 377 207 35 69 chr3 33287708 33287824 -194236754 - L2 LINE L2 -5 3308 3197 * 360 256 91 80 chr3 33287804 33287980 -194236598 + L2 LINE L2 2569 2746 -568 * 1762 124 23 0 chr3 33287980 33288246 -194236332 + AluSp SINE Alu 1 272 -41 26 0 0 0 chr3 33289526 33289552 -194235026 + AT_rich Low_complexity Low_complexity 1 26 0 768 339 68 26 chr3 33289673 33290121 -194234457 + L2 LINE L2 2590 3063 -209 31 58 0 0 chr3 33290232 33290284 -194234294 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 33291167 33291188 -194233390 + AT_rich Low_complexity Low_complexity 1 21 0 2783 226 88 5 chr3 33291369 33292144 -194232434 + L1ME3A LINE L1 5328 6166 -4 23 0 0 0 chr3 33292727 33292750 -194231828 + AT_rich Low_complexity Low_complexity 1 23 0 465 19 0 0 chr3 33293540 33293594 -194230984 + (TG)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr3 33293788 33293831 -194230747 + AT_rich Low_complexity Low_complexity 1 43 0 2057 127 3 10 chr3 33294150 33294442 -194230136 - AluSx SINE Alu -22 290 1 2246 93 7 0 chr3 33294494 33294794 -194229784 + AluSp SINE Alu 1 302 -11 818 126 0 8 chr3 33294794 33294913 -194229665 - AluJo/FLAM SINE Alu -184 118 1 910 210 15 45 chr3 33295313 33295537 -194229041 + AluSg/x SINE Alu 90 307 0 2181 200 86 14 chr3 33295738 33296642 -194227936 + L1ME LINE L1 4850 5800 -366 422 200 55 9 chr3 33296645 33296755 -194227823 + L1MA10 LINE L1 6220 6334 0 856 216 64 8 chr3 33297658 33297894 -194226684 + L1MA4 LINE L1 6052 6300 0 267 252 154 8 chr3 33297907 33298030 -194226548 - MIR SINE MIR -10 252 112 2346 74 0 13 chr3 33298345 33298644 -194225934 - AluSc SINE Alu -14 295 1 870 94 0 55 chr3 33299426 33299554 -194225024 - AluSg/x SINE Alu -16 296 176 22 0 0 0 chr3 33299730 33299752 -194224826 + AT_rich Low_complexity Low_complexity 1 22 0 899 255 42 5 chr3 33300048 33300260 -194224318 - MER58A DNA MER1_type 0 224 5 574 248 157 66 chr3 33301475 33301645 -194222933 + L1ME LINE L1 4457 4610 -1536 2159 127 0 10 chr3 33301645 33301953 -194222625 + AluSx SINE Alu 1 305 -7 574 248 157 66 chr3 33301953 33302512 -194222066 + L1ME LINE L1 4610 5268 -878 2241 83 0 33 chr3 33302512 33302813 -194221765 + AluSq SINE Alu 4 294 -19 574 248 157 66 chr3 33302813 33302884 -194221694 + L1ME LINE L1 5268 5331 -815 471 264 177 15 chr3 33302917 33303182 -194221396 + L1ME LINE L1 5512 5819 -302 766 259 239 28 chr3 33303450 33303605 -194220973 + L2 LINE L2 2656 2777 -536 1470 209 63 73 chr3 33303605 33304113 -194220465 + MLT1D LTR MaLR 2 504 -1 766 259 239 28 chr3 33304113 33304492 -194220086 + L2 LINE L2 2777 3312 -1 831 228 162 84 chr3 33305359 33305833 -194218745 + MLT1J LTR MaLR 1 511 0 739 200 91 11 chr3 33305925 33306100 -194218478 + MER3 DNA MER1_type 4 192 -17 306 152 30 0 chr3 33307253 33307319 -194217259 + L1ME4a LINE L1 6054 6121 0 1534 98 4 27 chr3 33307630 33307855 -194216723 - AluSq SINE Alu -12 301 82 3764 219 42 32 chr3 33308428 33309343 -194215235 + L1MCb LINE L1 19 942 -5103 452 244 92 8 chr3 33309370 33309501 -194215077 - MIR SINE MIR -109 153 12 2808 167 12 14 chr3 33309721 33310237 -194214341 + L1MB3 LINE L1 5317 5831 -352 1644 155 81 20 chr3 33310755 33310793 -194213785 + L1MB3 LINE L1 5814 5848 -335 1786 142 70 25 chr3 33310793 33311152 -194213426 - THE1C LTR MaLR 0 375 1 1644 155 81 20 chr3 33311152 33311461 -194213117 + L1MB3 LINE L1 5848 6182 -1 1341 170 72 0 chr3 33311605 33311828 -194212750 + MER8 DNA MER2_type 1 239 0 23 0 0 0 chr3 33312111 33312134 -194212444 + AT_rich Low_complexity Low_complexity 1 23 0 2204 120 3 0 chr3 33313012 33313320 -194211258 - AluSg SINE Alu -1 309 1 1192 201 8 26 chr3 33313360 33313594 -194210984 + AluJo SINE Alu 34 263 -49 207 91 23 45 chr3 33313604 33313648 -194210930 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 404 296 40 33 chr3 33313730 33313882 -194210696 + HAL1 LINE L1 1169 1321 -1186 425 284 114 8 chr3 33313917 33314153 -194210425 + HAL1 LINE L1 1391 1651 -856 21 0 0 0 chr3 33314236 33314257 -194210321 + AT_rich Low_complexity Low_complexity 1 21 0 375 270 135 22 chr3 33314499 33314677 -194209901 + L1MCb LINE L1 2416 2613 -3953 266 286 104 0 chr3 33314686 33314763 -194209815 - L2 LINE L2 -11 3261 3177 190 333 159 0 chr3 33314815 33314941 -194209637 - L2 LINE L2 -3 3310 3165 420 312 176 39 chr3 33315105 33315585 -194208993 - L2 LINE L2 -263 3009 2455 180 269 183 54 chr3 33317484 33317670 -194206908 - L3 LINE CR1 -1044 533 324 414 291 99 29 chr3 33318099 33318271 -194206307 + MIR SINE MIR 37 220 -42 1068 245 133 37 chr3 33318521 33319068 -194205510 + Charlie7 DNA MER1_type 33 632 -1980 1754 172 3 10 chr3 33319098 33319394 -194205184 + AluJo SINE Alu 5 298 -14 291 217 36 58 chr3 33319441 33319579 -194204999 + Charlie7 DNA MER1_type 2477 2611 -1 193 319 64 32 chr3 33319715 33319809 -194204769 + MER5A DNA MER1_type 40 136 -53 243 0 0 0 chr3 33320718 33320745 -194203833 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 217 80 40 chr3 33320905 33321080 -194203498 - L1ME4a LINE L1 -4 6117 5936 2583 64 3 0 chr3 33321379 33321691 -194202887 + AluSp SINE Alu 1 313 0 2305 200 36 0 chr3 33322323 33322844 -194201734 + L1MB7 LINE L1 5406 5945 -239 2067 131 3 7 chr3 33323518 33323823 -194200755 + AluSq SINE Alu 1 304 -9 1015 172 11 11 chr3 33323823 33323999 -194200579 + AluSc SINE Alu 131 309 0 22 0 0 0 chr3 33325163 33325185 -194199393 + AT_rich Low_complexity Low_complexity 1 22 0 2212 108 20 0 chr3 33326025 33326321 -194198257 + AluSx SINE Alu 1 302 -10 440 291 168 14 chr3 33326543 33326591 -194197987 - MIR SINE MIR -4 258 219 1554 141 27 23 chr3 33326591 33326854 -194197724 - AluJo SINE Alu -19 293 30 440 291 168 14 chr3 33326854 33326916 -194197662 - MIR SINE MIR -43 219 168 2267 107 0 3 chr3 33326916 33327214 -194197364 - AluSq SINE Alu -16 297 1 440 291 168 14 chr3 33327214 33327322 -194197256 - MIR SINE MIR -94 168 5 2358 107 0 0 chr3 33327859 33328168 -194196410 + AluSg SINE Alu 1 309 -1 248 280 43 0 chr3 33328221 33328314 -194196264 - MER20B DNA MER1_type -641 142 46 456 165 0 33 chr3 33328585 33328676 -194195902 + L1 LINE L1 4915 5002 -1144 2236 95 10 10 chr3 33328678 33328984 -194195594 + AluSx SINE Alu 1 306 -6 1412 92 0 46 chr3 33328988 33329205 -194195373 + AluSq SINE Alu 1 207 -106 709 270 140 39 chr3 33329437 33329866 -194194712 + L2 LINE L2 2736 3271 -42 2246 105 3 13 chr3 33330944 33331259 -194193319 - AluSx SINE Alu 0 312 1 319 257 0 0 chr3 33331530 33331604 -194192974 + MER117 DNA MER1_type 47 120 -77 373 239 255 23 chr3 33331900 33332159 -194192419 + MER5C DNA MER1_type 4 322 -2 242 275 143 0 chr3 33332219 33332310 -194192268 - MER20 DNA MER1_type -1 218 115 1110 156 33 19 chr3 33332643 33332854 -194191724 - AluJo SINE Alu -13 299 86 1587 158 95 7 chr3 33332997 33333270 -194191308 - AluJo SINE Alu -13 299 3 649 100 30 0 chr3 33333629 33333729 -194190849 + AluSp/q SINE Alu 192 294 -19 23 0 0 0 chr3 33334731 33334754 -194189824 + AT_rich Low_complexity Low_complexity 1 23 0 528 288 104 107 chr3 33335087 33335874 -194188704 - L1M2 LINE L1 -5626 1223 439 306 217 30 131 chr3 33336266 33336464 -194188114 - MER112 DNA MER1_type -7 253 76 227 211 0 0 chr3 33336858 33336910 -194187668 - MLT1J1 LTR MaLR -42 404 353 765 182 62 23 chr3 33336970 33337146 -194187432 - MER58A DNA MER1_type 0 224 42 216 0 0 0 chr3 33337156 33337180 -194187398 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr3 33337302 33337327 -194187251 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 33337542 33337570 -194187008 + AT_rich Low_complexity Low_complexity 1 28 0 974 113 0 0 chr3 33337572 33337705 -194186873 + FLAM_C SINE Alu 1 133 0 1128 133 0 12 chr3 33338192 33338358 -194186220 + AluSg/x SINE Alu 132 295 -15 240 226 0 0 chr3 33338919 33338972 -194185606 - L2 LINE L2 0 3313 3261 639 218 170 0 chr3 33339023 33339170 -194185408 + MER5A DNA MER1_type 17 188 -1 234 386 0 26 chr3 33339400 33339553 -194185025 + L2 LINE L2 2626 2774 -540 270 347 94 50 chr3 33339749 33340157 -194184421 + L2 LINE L2 2772 3186 -86 404 91 15 0 chr3 33341319 33341385 -194183193 - MER41A LTR ERV1 -88 466 400 266 287 56 28 chr3 33341584 33341727 -194182851 - L1ME LINE L1 -272 5849 5703 253 320 0 0 chr3 33342043 33342121 -194182457 + (CG)n Simple_repeat Simple_repeat 1 78 0 230 308 13 58 chr3 33342384 33342540 -194182038 - MIR3 SINE MIR -37 171 23 209 154 0 0 chr3 33344473 33344512 -194180066 - MER5A DNA MER1_type -83 106 68 964 171 73 24 chr3 33344512 33344717 -194179861 - AluJo SINE Alu -12 300 86 266 196 143 0 chr3 33344718 33344774 -194179804 - MER5A DNA MER1_type -113 76 13 972 176 83 10 chr3 33344908 33345113 -194179465 - MER58A DNA MER1_type -3 221 2 842 107 0 57 chr3 33345129 33345314 -194179264 - FLAM_C SINE Alu 0 177 1 220 205 0 0 chr3 33345449 33345488 -194179090 + (CATA)n Simple_repeat Simple_repeat 2 40 0 945 201 15 25 chr3 33346607 33346811 -194177767 - MER20 DNA MER1_type -1 218 17 213 333 251 14 chr3 33347007 33347214 -194177364 - L3 LINE CR1 -1012 565 310 502 277 158 47 chr3 33347354 33347715 -194176863 + LTR16C LTR ERVL 89 489 -2 196 362 43 0 chr3 33347940 33348034 -194176544 - L2 LINE L2 0 3313 3216 * 331 267 99 61 chr3 33348019 33348150 -194176428 - L2 LINE L2 -218 3054 2919 1574 185 83 43 chr3 33348292 33348885 -194175693 + MLT2F LTR ERVL 1 663 0 389 306 56 12 chr3 33348894 33349054 -194175524 - L2 LINE L2 -569 2745 2579 1121 204 84 35 chr3 33349115 33349459 -194175119 - L1ME1 LINE L1 -5 6161 5801 2286 99 3 0 chr3 33349474 33349768 -194174810 - AluSq SINE Alu -18 295 1 915 261 100 16 chr3 33350196 33350506 -194174072 - LTR16B LTR ERVL 0 464 129 489 317 39 32 chr3 33350563 33351128 -194173450 - HERV16 LTR ERVL -5 5320 4756 815 341 48 26 chr3 33351244 33352266 -194172312 - HERV16 LTR ERVL -828 4826 3722 202 214 0 0 chr3 33352283 33352325 -194172253 - L2 LINE L2 -775 2539 2498 450 261 29 36 chr3 33352368 33352506 -194172072 + L2 LINE L2 3177 3313 0 1009 321 134 29 chr3 33352508 33353138 -194171440 + L2 LINE L2 2403 3104 -209 203 275 8 150 chr3 33353418 33353538 -194171040 + L2 LINE L2 3175 3277 -36 211 225 0 0 chr3 33353539 33353579 -194170999 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 733 157 0 30 chr3 33353940 33354074 -194170504 - MER58B DNA MER1_type -15 326 197 717 319 19 5 chr3 33354297 33354510 -194170068 - MIR SINE MIR -30 232 17 28 0 0 0 chr3 33354803 33354831 -194169747 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 33355554 33355586 -194168992 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2177 123 0 0 chr3 33355605 33355889 -194168689 - AluSg SINE Alu -15 295 12 281 309 166 22 chr3 33355962 33356143 -194168435 + L3b LINE CR1 1374 1580 -3 703 227 13 7 chr3 33356617 33356767 -194167811 + MIR SINE MIR 9 159 -103 2897 60 4 114 chr3 33356768 33357250 -194167328 - MLT2A1 LTR ERVL -2 442 14 471 198 30 0 chr3 33357256 33357357 -194167221 + MIR SINE MIR 154 257 -5 426 212 76 0 chr3 33357501 33357619 -194166959 - L1MC5 LINE L1 -124 7837 7711 261 242 147 26 chr3 33357926 33358116 -194166462 + LTR48 LTR ERV1 524 736 -51 686 219 7 0 chr3 33358172 33358309 -194166269 + MER58B DNA MER1_type 194 331 -10 391 243 106 97 chr3 33358410 33358547 -194166031 - L1MC5 LINE L1 -266 7695 7561 1539 195 26 19 chr3 33358547 33358855 -194165723 + AluJo SINE Alu 1 310 -2 391 243 106 97 chr3 33358855 33358983 -194165595 - L1MC5 LINE L1 -400 7561 7436 2333 85 0 7 chr3 33358983 33359288 -194165290 + AluY SINE Alu 1 303 -8 391 243 106 97 chr3 33359288 33359494 -194165084 - L1MC5 LINE L1 -525 7436 7219 1076 268 73 77 chr3 33359686 33359705 -194164873 + L2 LINE L2 2524 2542 -771 2135 103 4 0 chr3 33359705 33360027 -194164551 + AluSg SINE Alu 1 323 0 1076 268 73 77 chr3 33360027 33360213 -194164365 + L2 LINE L2 2542 2727 -586 2022 93 7 21 chr3 33360213 33360519 -194164059 + AluSg1 SINE Alu 5 306 0 1076 268 73 77 chr3 33360519 33360820 -194163758 + L2 LINE L2 2727 3025 -288 2134 120 3 3 chr3 33360820 33361129 -194163449 + AluSx SINE Alu 1 309 -3 1076 268 73 77 chr3 33361129 33361415 -194163163 + L2 LINE L2 3025 3311 -2 675 288 28 19 chr3 33361532 33361747 -194162831 - MIR SINE MIR -32 230 14 348 269 144 0 chr3 33361810 33361914 -194162664 - L2 LINE L2 0 3313 3195 323 244 181 55 chr3 33362138 33362265 -194162313 - MIR SINE MIR -113 149 7 210 300 180 35 chr3 33362776 33362917 -194161661 + MIR SINE MIR 14 170 -57 210 254 15 60 chr3 33362922 33362989 -194161589 - L2 LINE L2 0 3313 3250 193 188 47 62 chr3 33363585 33363649 -194160929 - MIR SINE MIR -84 178 116 387 0 0 0 chr3 33363760 33363803 -194160775 + (CA)n Simple_repeat Simple_repeat 2 44 0 234 233 89 33 chr3 33364015 33364105 -194160473 - MLT1I LTR MaLR -39 370 276 1002 254 35 16 chr3 33364564 33364820 -194159758 + MLT1H LTR MaLR 62 322 -227 3198 118 7 61 chr3 33364991 33365060 -194159518 - L1PA16 LINE L1 0 6166 6095 2295 56 32 0 chr3 33365060 33365345 -194159233 - AluY SINE Alu -17 294 1 3198 118 7 61 chr3 33365345 33365779 -194158799 - L1PA16 LINE L1 -71 6095 5695 1753 126 58 51 chr3 33365779 33365933 -194158645 - AluSx SINE Alu -16 296 138 2205 125 3 6 chr3 33365933 33366244 -194158334 - AluSx SINE Alu -2 310 1 1753 126 58 51 chr3 33366244 33366383 -194158195 - AluSx SINE Alu -174 138 1 3198 118 7 61 chr3 33366383 33366453 -194158125 - L1PA16 LINE L1 -471 5695 5623 3833 153 20 4 chr3 33366453 33367464 -194157114 + L1P4 LINE L1 4556 5577 -589 787 215 6 25 chr3 33367465 33367628 -194156950 - FRAM SINE Alu -16 160 1 4725 150 40 6 chr3 33367686 33368485 -194156093 + LTR1B LTR ERV1 1 826 0 482 243 0 19 chr3 33369937 33370044 -194154534 + L2 LINE L2 3208 3312 -1 592 234 45 45 chr3 33370402 33370603 -194153975 - L2 LINE L2 -965 2349 2149 464 281 144 19 chr3 33370614 33370774 -194153804 - MER5A DNA MER1_type -6 183 4 292 347 216 22 chr3 33370774 33371620 -194152958 - L2 LINE L2 -1161 2153 1142 1114 161 22 65 chr3 33371891 33372214 -194152364 + MER33 DNA MER1_type 6 314 -10 707 151 50 0 chr3 33423282 33423401 -194101177 - FLAM_C SINE Alu -7 136 12 1771 201 11 72 chr3 33425006 33425397 -194099181 - L1MB1 LINE L1 -15 6174 5760 243 0 0 0 chr3 33425397 33425424 -194099154 + (TG)n Simple_repeat Simple_repeat 2 28 0 191 61 30 0 chr3 33425434 33425467 -194099111 + (TA)n Simple_repeat Simple_repeat 1 34 0 1771 201 11 72 chr3 33425467 33426006 -194098572 - L1MB1 LINE L1 -438 5751 5298 307 264 11 0 chr3 33427623 33427710 -194096868 + LTR16C LTR ERVL 404 491 0 616 183 32 97 chr3 33428764 33428950 -194095628 + MER5B DNA MER1_type 2 175 -3 658 270 36 24 chr3 33429249 33429648 -194094930 - MLT1G1 LTR MaLR 0 595 100 298 185 0 0 chr3 33429946 33430000 -194094578 + Charlie8 DNA MER1_type 127 180 -2237 618 208 125 36 chr3 33430014 33430206 -194094372 - MER3 DNA MER1_type 0 209 1 2353 164 51 26 chr3 33430461 33430954 -194093624 - MLT1D LTR MaLR 0 505 1 2223 96 0 7 chr3 33431428 33431721 -194092857 - AluSx SINE Alu -11 301 11 1834 150 55 65 chr3 33432191 33432590 -194091988 + MLT2C1 LTR ERVL 3 397 0 401 242 150 33 chr3 33433669 33433822 -194090756 + MLT1J2 LTR MaLR 189 359 -91 1625 201 3 3 chr3 33434212 33434500 -194090078 + AluJo SINE Alu 5 292 -20 235 261 22 120 chr3 33434817 33434909 -194089669 + L2 LINE L2 3182 3264 -8 289 388 0 0 chr3 33435016 33435145 -194089433 + L2 LINE L2 2224 2352 -962 941 217 38 5 chr3 33435961 33436173 -194088405 + MER58A DNA MER1_type 2 220 -4 250 372 122 6 chr3 33436690 33436854 -194087724 - MIR SINE MIR -62 200 18 702 187 73 0 chr3 33437010 33437160 -194087418 + Charlie1 DNA MER1_type 66 226 -2535 1494 188 4 0 chr3 33437260 33437526 -194087052 - THE1B LTR MaLR -97 267 1 1024 225 31 56 chr3 33437526 33437847 -194086731 + MER110A LTR ERV1 156 468 0 21 0 0 0 chr3 33438309 33438330 -194086248 + AT_rich Low_complexity Low_complexity 1 21 0 384 22 0 0 chr3 33438923 33438968 -194085610 + (CA)n Simple_repeat Simple_repeat 1 45 0 908 165 163 60 chr3 33439431 33439496 -194085082 - LTR37A LTR ERV1 -1 425 368 2301 80 10 3 chr3 33439496 33439798 -194084780 + AluY SINE Alu 1 304 -7 908 165 163 60 chr3 33439798 33440113 -194084465 - LTR37A LTR ERV1 -58 368 6 924 268 138 10 chr3 33440231 33440631 -194083947 + LTR33 LTR ERVL 4 454 -67 1896 145 142 36 chr3 33440808 33441195 -194083383 - MSTA LTR MaLR 0 428 1 366 165 44 22 chr3 33441824 33441915 -194082663 - MLT1I LTR MaLR -8 401 309 279 260 14 0 chr3 33442060 33442133 -194082445 - MLT1I LTR MaLR -335 74 1 318 184 0 0 chr3 33442580 33442656 -194081922 + CT-rich Low_complexity Low_complexity 3 78 0 379 169 0 12 chr3 33443992 33444075 -194080503 - L1MA5A LINE L1 0 6297 6216 1246 100 0 0 chr3 33444075 33444235 -194080343 - AluSq SINE Alu -153 160 1 22 0 0 0 chr3 33444476 33444498 -194080080 + AT_rich Low_complexity Low_complexity 1 22 0 311 333 100 8 chr3 33444674 33444794 -194079784 + MER5A DNA MER1_type 55 185 -4 22 56 0 0 chr3 33445132 33445168 -194079410 + AT_rich Low_complexity Low_complexity 1 36 0 2093 125 3 0 chr3 33445811 33446098 -194078480 + AluSg SINE Alu 1 288 -22 938 285 231 19 chr3 33446377 33446861 -194077717 + L2 LINE L2 738 1324 -1990 812 234 51 81 chr3 33446958 33447352 -194077226 - MLT1J LTR MaLR -129 382 1 474 256 53 0 chr3 33447354 33447487 -194077091 + L2 LINE L2 1324 1463 -1851 2155 300 173 18 chr3 33447490 33448772 -194075806 + L2 LINE L2 1711 2792 -521 2219 97 3 3 chr3 33448772 33449072 -194075506 - AluY SINE Alu -10 301 2 2186 125 3 0 chr3 33449074 33449369 -194075209 - AluSp SINE Alu -17 296 1 2155 300 173 18 chr3 33449369 33449464 -194075114 + L2 LINE L2 2792 3304 -9 1770 175 80 13 chr3 33450464 33450816 -194073762 + MLT2D LTR ERVL 1 383 -31 414 0 0 0 chr3 33450816 33450862 -194073716 + (CA)n Simple_repeat Simple_repeat 2 47 0 1770 175 80 13 chr3 33450862 33450897 -194073681 + MLT2D LTR ERVL 383 414 0 29386 114 18 69 chr3 33451047 33456732 -194067846 - L1P LINE L1 -743 5403 13 21 36 0 0 chr3 33457722 33457750 -194066828 + AT_rich Low_complexity Low_complexity 1 28 0 343 336 20 27 chr3 33458869 33459018 -194065560 + MIR3 SINE MIR 38 185 -23 324 215 91 25 chr3 33459128 33459249 -194065329 - L1ME4a LINE L1 -38 6083 5955 1835 188 30 25 chr3 33459543 33459937 -194064641 + Tigger1 DNA MER2_type 2 397 -2021 242 188 0 0 chr3 33459943 33459991 -194064587 + Tigger1 DNA MER2_type 1161 1208 -1210 1466 248 41 13 chr3 33460092 33460552 -194064026 - LTR33 LTR ERVL -48 473 1 2575 299 103 14 chr3 33460555 33461581 -194062997 - L2 LINE L2 -1864 1450 333 734 288 38 29 chr3 33461596 33461836 -194062742 - MIR SINE MIR -16 246 5 413 280 185 12 chr3 33461854 33462097 -194062481 - L2 LINE L2 -2998 316 32 207 0 0 0 chr3 33462224 33462247 -194062331 + (T)n Simple_repeat Simple_repeat 1 23 0 33 43 0 0 chr3 33462273 33462320 -194062258 + AT_rich Low_complexity Low_complexity 1 47 0 385 329 64 21 chr3 33463670 33463810 -194060768 + L2 LINE L2 3168 3313 0 632 258 102 48 chr3 33464657 33465055 -194059523 - MLT1G LTR MaLR -107 460 22 1617 167 69 28 chr3 33465088 33465448 -194059130 + THE1C LTR MaLR 1 375 0 2072 128 3 10 chr3 33466158 33466464 -194058114 - AluSx SINE Alu -8 304 1 693 300 4 11 chr3 33466479 33466739 -194057839 - MIR SINE MIR -1 261 4 604 197 45 15 chr3 33467061 33467193 -194057385 - L2 LINE L2 -1272 2042 1907 832 238 71 10 chr3 33467348 33467594 -194056984 + MIR SINE MIR 10 262 0 425 78 0 0 chr3 33468132 33468196 -194056382 - L1P LINE L1 -780 5392 5329 856 284 65 57 chr3 33468979 33469489 -194055089 + MLT2B3 LTR ERVL 1 514 -40 211 277 0 0 chr3 33469775 33469822 -194054756 + CT-rich Low_complexity Low_complexity 2 48 0 618 175 51 120 chr3 33469823 33470010 -194054568 + MLT1A2 LTR MaLR 173 345 -29 459 0 0 0 chr3 33470010 33470061 -194054517 + (TG)n Simple_repeat Simple_repeat 2 52 0 618 175 51 120 chr3 33470061 33470090 -194054488 + MLT1A2 LTR MaLR 345 374 0 884 280 65 38 chr3 33470769 33471140 -194053438 + LTR16C LTR ERVL 81 461 -30 2164 178 78 59 chr3 33471320 33471859 -194052719 + MER44D DNA MER2_type 2 605 0 797 229 116 51 chr3 33472526 33472818 -194051760 - LTR16C LTR ERVL 0 491 181 1316 284 57 5 chr3 33472821 33473244 -194051334 + LTR16A LTR ERVL 1 445 -5 344 377 106 33 chr3 33473678 33474129 -194050449 + L2 LINE L2 2474 2957 -357 363 381 45 6 chr3 33474214 33474390 -194050188 - MIR3 SINE MIR -9 199 17 523 235 41 18 chr3 33474650 33474820 -194049758 - MER104 DNA MER2_type -3 177 4 247 294 174 0 chr3 33474969 33475061 -194049517 - L2 LINE L2 -1 3271 3164 981 287 13 4 chr3 33475358 33475595 -194048983 + MIR SINE MIR 3 241 -21 339 345 111 13 chr3 33475674 33475900 -194048678 + MIR SINE MIR 15 262 0 1119 269 18 26 chr3 33477233 33477575 -194047003 + MLT1H LTR MaLR 6 344 -205 243 227 15 15 chr3 33477849 33477915 -194046663 + MLT1J2 LTR MaLR 77 142 -308 1870 218 92 28 chr3 33477973 33478814 -194045764 + L1MB8 LINE L1 5122 6011 -167 323 172 111 40 chr3 33478827 33478926 -194045652 + THE1C LTR MaLR 19 124 -251 432 310 6 19 chr3 33481558 33481716 -194042862 - MLT1H LTR MaLR -339 210 55 1055 225 121 114 chr3 33481860 33482447 -194042131 - MLT1E LTR MaLR -2 591 1 299 353 8 16 chr3 33483100 33483222 -194041356 + L2 LINE L2 2939 3059 -213 435 210 81 16 chr3 33484026 33484150 -194040428 - LTR67 LTR ERVL -4 553 422 569 312 93 29 chr3 33484201 33484480 -194040098 - ERVL LTR ERVL -1338 4426 4130 320 259 65 29 chr3 33484878 33485017 -194039561 + MLT1I LTR MaLR 232 375 -34 348 324 11 27 chr3 33485165 33485350 -194039228 - ERVL LTR ERVL -1995 3659 3478 290 162 14 0 chr3 33485350 33485424 -194039154 + CT-rich Low_complexity Low_complexity 2 76 0 293 299 0 0 chr3 33485731 33485818 -194038760 - ERVL LTR ERVL -2444 3210 3124 344 362 51 6 chr3 33485893 33486070 -194038508 - ERVL LTR ERVL -1967 3029 2845 400 331 18 18 chr3 33487927 33488093 -194036485 + HAL1 LINE L1 2237 2402 -105 30 59 0 0 chr3 33488133 33488184 -194036394 + AT_rich Low_complexity Low_complexity 1 51 0 4427 219 25 52 chr3 33488501 33489782 -194034796 + L1M4 LINE L1 22 1268 -5274 413 192 10 10 chr3 33489882 33489986 -194034592 + LTR43 LTR ERV1 499 602 0 1642 245 72 11 chr3 33490000 33490526 -194034052 + L1M4 LINE L1 1601 2158 -4488 29739 73 10 5 chr3 33490540 33494294 -194030284 - L1PA6 LINE L1 -13 6141 2354 2347 92 0 0 chr3 33494294 33494587 -194029991 - AluY SINE Alu -18 293 1 29739 73 10 5 chr3 33494587 33495907 -194028671 - L1PA6 LINE L1 -3800 2354 1043 5722 70 30 4 chr3 33496007 33496784 -194027794 + L1PA7 LINE L1 5356 6152 -2 763 117 37 6 chr3 33496938 33497101 -194027477 - L1MA7 LINE L1 0 6291 6124 636 244 19 73 chr3 33498498 33498703 -194025875 - MER20 DNA MER1_type 0 219 26 1096 315 46 13 chr3 33499248 33499638 -194024940 + LTR16A LTR ERVL 16 418 -32 861 319 69 7 chr3 33499932 33500367 -194024211 + MLT1J LTR MaLR 17 478 -33 199 239 25 25 chr3 33500960 33501047 -194023531 + CT-rich Low_complexity Low_complexity 5 94 -69 751 156 0 57 chr3 33501047 33501188 -194023390 - FLAM_A SINE Alu 0 133 1 199 239 25 25 chr3 33501188 33501259 -194023319 + CT-rich Low_complexity Low_complexity 93 163 0 1731 243 32 41 chr3 33501554 33502213 -194022365 - L1ME3A LINE L1 -196 5974 5322 22 35 0 0 chr3 33502229 33502258 -194022320 + AT_rich Low_complexity Low_complexity 1 29 0 327 289 149 0 chr3 33502489 33502610 -194021968 - MIR SINE MIR -74 188 50 1265 220 23 16 chr3 33502667 33502971 -194021607 - AluJo SINE Alu -6 306 1 256 325 73 8 chr3 33502974 33503097 -194021481 - MIR SINE MIR -98 164 34 2917 138 15 81 chr3 33503108 33503201 -194021377 - LTR9 LTR ERV1 -38 574 476 2505 62 0 31 chr3 33503201 33503522 -194021056 + AluY SINE Alu 1 311 0 2917 138 15 81 chr3 33503522 33504043 -194020535 - LTR9 LTR ERV1 -136 476 1 843 64 0 0 chr3 33504543 33504653 -194019925 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 925 287 81 50 chr3 33504776 33505271 -194019307 - LTR33 LTR ERVL -7 514 5 573 344 16 8 chr3 33505470 33505839 -194018739 - ERVL LTR ERVL -398 5366 4995 315 256 23 12 chr3 33507660 33507746 -194016832 + MIR SINE MIR 5 91 -171 1235 145 98 0 chr3 33507954 33508168 -194016410 - MER2 DNA MER2_type -110 235 1 913 314 48 10 chr3 33508666 33508978 -194015600 + LTR33 LTR ERVL 1 324 -197 395 269 0 0 chr3 33509013 33509106 -194015472 + MER69 DNA AcHobo 11 103 -1123 24 0 0 0 chr3 33509677 33509701 -194014877 + AT_rich Low_complexity Low_complexity 1 24 0 365 222 69 105 chr3 33509701 33509847 -194014731 - HAL1 LINE L1 -3 2504 2354 1602 186 61 0 chr3 33509847 33510174 -194014404 - MER7A DNA MER2_type -1 345 1 365 222 69 105 chr3 33510174 33510193 -194014385 - HAL1 LINE L1 -153 2354 2336 405 0 0 0 chr3 33510193 33510238 -194014340 + (TG)n Simple_repeat Simple_repeat 1 45 0 234 0 0 0 chr3 33510237 33510263 -194014315 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 365 222 69 105 chr3 33510238 33510402 -194014176 - HAL1 LINE L1 -171 2336 2210 201 263 0 0 chr3 33510684 33510722 -194013856 - L2 LINE L2 -18 3295 3258 312 343 77 34 chr3 33510761 33511114 -194013464 - MLT1K LTR MaLR -10 578 211 945 264 91 14 chr3 33511733 33512029 -194012549 + LTR16C LTR ERVL 159 477 -14 561 287 124 0 chr3 33512241 33512450 -194012128 + MIR SINE MIR 23 257 -5 22 0 0 0 chr3 33512534 33512556 -194012022 + AT_rich Low_complexity Low_complexity 1 22 0 183 283 38 19 chr3 33513157 33513210 -194011368 + MER5A DNA MER1_type 1 54 -135 293 323 99 35 chr3 33513601 33513802 -194010776 + L2 LINE L2 3096 3309 -4 623 233 135 10 chr3 33514214 33514407 -194010171 - L2 LINE L2 -3 3310 3094 2473 238 153 12 chr3 33514451 33515283 -194009295 - L2 LINE L2 -669 2645 1697 2197 71 48 0 chr3 33515739 33516034 -194008544 - AluY SINE Alu -2 309 1 182 256 26 0 chr3 33516649 33516688 -194007890 + L2 LINE L2 2586 2625 -689 734 281 108 61 chr3 33516759 33517183 -194007395 + LTR16A LTR ERVL 4 447 -3 258 176 39 0 chr3 33517252 33517303 -194007275 + L2 LINE L2 3209 3261 -11 861 318 65 22 chr3 33517836 33518160 -194006418 + MLT1K LTR MaLR 85 422 -166 355 316 58 73 chr3 33518273 33518615 -194005963 + L2 LINE L2 2935 3271 -1 281 270 9 61 chr3 33520485 33520600 -194003978 + MIR SINE MIR 104 212 -50 667 325 74 28 chr3 33520787 33521150 -194003428 + LTR16C LTR ERVL 96 475 -16 269 214 126 39 chr3 33521636 33521739 -194002839 + L2 LINE L2 3161 3272 0 282 311 87 16 chr3 33521939 33522122 -194002456 + MIR SINE MIR 17 212 -50 1294 259 23 41 chr3 33523003 33523482 -194001096 + MLT1H LTR MaLR 13 545 -4 281 178 0 0 chr3 33525871 33525916 -193998662 - MLT1L LTR MaLR -223 392 348 348 322 34 11 chr3 33526227 33526404 -193998174 + Charlie8 DNA MER1_type 83 263 -2154 215 348 89 71 chr3 33527809 33528033 -193996545 + L2 LINE L2 3045 3272 0 5249 160 53 8 chr3 33528197 33529122 -193995456 - L1P LINE L1 -5169 977 11 8137 135 14 4 chr3 33529156 33531306 -193993272 - L1PA10 LINE L1 -4 6164 4000 933 245 73 0 chr3 33531415 33531758 -193992820 + L1MC2 LINE L1 2125 2492 -3892 929 190 101 53 chr3 33531754 33531935 -193992643 + L1MC2 LINE L1 3733 3931 -2451 * 2168 128 3 0 chr3 33531935 33532232 -193992346 + AluSp SINE Alu 1 298 -15 929 190 101 53 chr3 33532232 33532297 -193992281 + L1MC2 LINE L1 3931 3991 -2391 2109 169 8 6 chr3 33532345 33532700 -193991878 - MLT1A1 LTR MaLR 0 365 10 1022 199 46 10 chr3 33532711 33533061 -193991517 + L1MC2 LINE L1 5390 5748 -672 235 208 38 9 chr3 33536109 33536215 -193988363 + (TA)n Simple_repeat Simple_repeat 1 109 0 249 33 0 0 chr3 33536235 33536265 -193988313 + (TG)n Simple_repeat Simple_repeat 2 31 0 582 144 18 45 chr3 33536669 33536780 -193987798 + L1MC2 LINE L1 6062 6169 -411 * 1331 174 15 14 chr3 33536777 33537046 -193987532 - L1MC/D LINE L1 -515 5657 5399 320 318 0 35 chr3 33537048 33537167 -193987411 - MIR SINE MIR -67 141 42 267 309 24 55 chr3 33537612 33537777 -193986801 + MLT1K LTR MaLR 407 566 -22 184 335 168 7 chr3 33538015 33538170 -193986408 + L2 LINE L2 2228 2407 -907 2319 226 64 72 chr3 33538221 33538284 -193986294 - L1ME2 LINE L1 -301 5863 5801 2181 65 62 0 chr3 33538284 33538560 -193986018 + AluY SINE Alu 1 293 -18 2319 226 64 72 chr3 33538560 33539898 -193984680 - L1ME2 LINE L1 -363 5801 4470 283 128 0 21 chr3 33539898 33539945 -193984633 + THE1C LTR MaLR 1 46 -318 834 184 0 0 chr3 33539956 33540092 -193984486 - AluJo SINE Alu -176 136 1 1860 169 23 20 chr3 33540092 33540435 -193984143 + THE1C LTR MaLR 32 375 0 808 201 144 17 chr3 33540436 33540735 -193983843 - L1ME2 LINE L1 -1673 4473 4137 435 335 109 14 chr3 33541566 33541859 -193982719 + L2 LINE L2 2429 2749 -565 610 243 102 44 chr3 33542510 33542736 -193981842 - MIR SINE MIR -16 246 8 511 279 51 17 chr3 33543141 33543322 -193981256 + MIR SINE MIR 34 219 -43 439 281 36 14 chr3 33543727 33543866 -193980712 + MLT2E LTR ERVL 34 175 -453 365 379 36 12 chr3 33543874 33544127 -193980451 + MLT2E LTR ERVL 356 614 -14 1284 191 88 28 chr3 33544187 33544507 -193980071 - MER58B DNA MER1_type -1 340 2 323 283 85 80 chr3 33544512 33544724 -193979854 + MIR SINE MIR 21 233 -29 21 0 0 0 chr3 33545225 33545246 -193979332 + AT_rich Low_complexity Low_complexity 1 21 0 2141 117 10 3 chr3 33545959 33546267 -193978311 - AluSx SINE Alu -2 310 1 307 283 83 56 chr3 33547062 33547242 -193977336 + MIR SINE MIR 49 233 -29 612 283 31 26 chr3 33548235 33548461 -193976117 + L2 LINE L2 3005 3231 -82 5536 48 0 0 chr3 33549841 33550514 -193974064 - L1PA5 LINE L1 0 6154 5482 2375 108 164 0 chr3 33550679 33551104 -193973474 - L1MA9 LINE L1 -3 6309 5817 928 180 6 6 chr3 33551124 33551285 -193973293 - MER2 DNA MER2_type -184 161 1 659 175 33 38 chr3 33551287 33551470 -193973108 - L1M1 LINE L1 -3927 2805 2624 11674 181 17 8 chr3 33551475 33554893 -193969685 - L1PB1 LINE L1 -1 6866 3416 2177 141 8 32 chr3 33554890 33555267 -193969311 - L1PB1 LINE L1 -5860 1003 636 * 1078 138 53 0 chr3 33555269 33555457 -193969121 - L1PB1 LINE L1 -6663 200 3 6866 260 42 22 chr3 33555460 33556140 -193968438 - L1M1 LINE L1 -4089 2643 1978 399 21 0 0 chr3 33556140 33556188 -193968390 + (TG)n Simple_repeat Simple_repeat 2 49 0 6866 260 42 22 chr3 33556188 33558045 -193966533 - L1M1 LINE L1 -4754 1978 391 1229 308 22 21 chr3 33558051 33558661 -193965917 - L1M3de LINE L1 -5593 1060 2 25 0 0 0 chr3 33558669 33558694 -193965884 + AT_rich Low_complexity Low_complexity 1 25 0 343 281 40 49 chr3 33559704 33560041 -193964537 + L1MEd LINE L1 1004 1226 -4893 329 352 50 5 chr3 33560046 33560245 -193964333 + HAL1 LINE L1 1458 1665 -842 535 273 109 36 chr3 33560781 33561357 -193963221 + L1MC5 LINE L1 7311 7928 -33 239 210 145 0 chr3 33561500 33561562 -193963016 + Charlie1 DNA MER1_type 157 227 -2534 * 352 235 43 9 chr3 33561560 33561675 -193962903 + Charlie1 DNA MER1_type 2631 2749 -12 292 319 80 65 chr3 33561725 33561863 -193962715 + MIR SINE MIR 37 176 -86 1773 239 81 64 chr3 33562131 33562912 -193961666 - L1ME3A LINE L1 -121 6049 5256 327 191 0 16 chr3 33563529 33563592 -193960986 - MER5B DNA MER1_type -3 175 114 6505 189 41 21 chr3 33563613 33566082 -193958496 - L1PA16 LINE L1 -3 6163 3650 6169 252 20 15 chr3 33566078 33568000 -193956578 + L1PA16 LINE L1 1719 3647 -2499 * 311 132 19 0 chr3 33568001 33568054 -193956524 + MER5B DNA MER1_type 125 178 0 217 225 14 56 chr3 33568292 33568363 -193956215 + CT-rich Low_complexity Low_complexity 5 72 0 1520 189 7 39 chr3 33568365 33568671 -193955907 - AluJo SINE Alu -4 308 13 264 300 42 42 chr3 33569231 33569421 -193955157 + L1ME LINE L1 5643 5832 -289 393 209 395 0 chr3 33569696 33569830 -193954748 + MER5A DNA MER1_type 3 189 0 189 0 0 0 chr3 33570069 33570090 -193954488 + (TC)n Simple_repeat Simple_repeat 2 22 0 2183 108 3 0 chr3 33570090 33570378 -193954200 - AluSg SINE Alu -17 293 5 1378 197 123 55 chr3 33571453 33571716 -193952862 - MSTD LTR MaLR -6 390 94 1965 135 24 0 chr3 33571716 33572012 -193952566 - AluSg SINE Alu -6 304 2 1378 197 123 55 chr3 33572012 33572113 -193952465 - MSTD LTR MaLR -302 94 1 28 29 0 0 chr3 33572135 33572170 -193952408 + AT_rich Low_complexity Low_complexity 1 35 0 253 349 32 8 chr3 33572572 33572698 -193951880 + MIR SINE MIR 59 187 -75 669 288 68 17 chr3 33572762 33572998 -193951580 + MIR SINE MIR 15 262 0 6677 146 39 11 chr3 33573162 33573809 -193950769 - Tigger1 DNA MER2_type 0 2418 1722 2270 93 3 3 chr3 33573809 33574110 -193950468 - AluY SINE Alu -8 303 3 6677 146 39 11 chr3 33574110 33574635 -193949943 - Tigger1 DNA MER2_type -696 1722 1213 215 79 26 0 chr3 33575079 33575117 -193949461 + (TA)n Simple_repeat Simple_repeat 2 40 0 313 326 49 0 chr3 33575147 33575291 -193949287 + L1M4 LINE L1 2734 2884 -3262 306 329 62 33 chr3 33575312 33575522 -193949056 + L1M4 LINE L1 3272 3487 -2659 330 297 117 23 chr3 33575711 33575839 -193948739 + L1M4 LINE L1 3723 3862 -2284 526 291 98 37 chr3 33575860 33576434 -193948144 + L1M4 LINE L1 3928 4536 -1610 330 67 0 0 chr3 33576488 33576533 -193948045 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr3 33576584 33576613 -193947965 + AT_rich Low_complexity Low_complexity 1 29 0 3531 44 0 5 chr3 33576633 33577069 -193947509 - L1PA5 LINE L1 -1 6153 5720 344 303 40 34 chr3 33577069 33577244 -193947334 + L1M4 LINE L1 4672 4847 -1299 459 270 107 19 chr3 33577412 33577627 -193946951 + L1M4 LINE L1 5106 5339 -807 1758 78 4 0 chr3 33577677 33577919 -193946659 + L1PA13 LINE L1 5920 6162 -1 22 35 0 0 chr3 33578689 33578718 -193945860 + AT_rich Low_complexity Low_complexity 1 29 0 42624 47 3 17 chr3 33579504 33585746 -193938832 - L1PA4 LINE L1 -2 6153 1 500 235 88 74 chr3 33586551 33586768 -193937810 - MLT1J LTR MaLR -2 509 290 556 268 34 39 chr3 33586811 33587016 -193937562 - MLT1J LTR MaLR -297 214 11 366 275 17 17 chr3 33587268 33587388 -193937190 + LTR33 LTR ERVL 327 446 -75 544 216 20 0 chr3 33587593 33587695 -193936883 - MER5A DNA MER1_type 0 189 86 5448 116 34 9 chr3 33587702 33588637 -193935941 - L1PB2 LINE L1 0 6151 5214 656 232 0 1 chr3 33588634 33588817 -193935761 + L1PB2 LINE L1 5049 5229 -917 * 277 100 0 0 chr3 33588825 33588865 -193935713 - L1MA1 LINE L1 -7 6295 6256 311 100 0 0 chr3 33588865 33588905 -193935673 - MER5A DNA MER1_type -149 40 1 202 247 56 0 chr3 33589646 33589735 -193934843 + (TA)n Simple_repeat Simple_repeat 1 94 0 587 200 0 17 chr3 33591099 33591214 -193933364 - L2 LINE L2 0 3313 3201 272 295 62 36 chr3 33591714 33591826 -193932752 + L2 LINE L2 3158 3272 0 444 305 0 40 chr3 33591889 33592066 -193932512 - MIR SINE MIR -11 251 82 432 289 74 38 chr3 33592398 33592717 -193931861 + L1MC4a LINE L1 5635 5822 -340 5223 169 15 11 chr3 33643196 33644303 -193880275 + L1PB4 LINE L1 4364 5485 -671 2109 91 0 4 chr3 33644303 33644577 -193880001 + AluY SINE Alu 23 295 -16 5223 169 15 11 chr3 33644577 33645244 -193879334 + L1PB4 LINE L1 5485 6148 -8 2425 57 7 7 chr3 33645254 33645553 -193879025 + AluY SINE Alu 1 299 -12 2380 167 21 15 chr3 33645558 33646031 -193878547 - L1MA7 LINE L1 -145 6146 5671 1160 149 70 9 chr3 33646035 33646249 -193878329 - THE1B LTR MaLR -137 227 1 11708 95 6 2 chr3 33646249 33647823 -193876755 - THE1B-int LTR MaLR 0 1580 1 2040 131 98 15 chr3 33647823 33648159 -193876419 - THE1B LTR MaLR 0 364 1 830 298 86 32 chr3 33648614 33648828 -193875750 + LTR16C LTR ERVL 36 237 -254 1783 197 65 18 chr3 33648828 33649274 -193875304 - MLT1C LTR MaLR 0 467 1 830 298 86 32 chr3 33649274 33649492 -193875086 + LTR16C LTR ERVL 237 491 0 221 366 14 0 chr3 33650665 33650736 -193873842 + L2 LINE L2 3201 3272 0 273 320 162 17 chr3 33651606 33651829 -193872749 - MIR SINE MIR -1 261 2 3731 158 29 6 chr3 33651935 33652624 -193871954 - MER50 LTR ERV1 -23 711 7 592 312 63 61 chr3 33653836 33654342 -193870236 + MLT1K LTR MaLR 76 582 -6 890 221 103 0 chr3 33654466 33654661 -193869917 + MER20 DNA MER1_type 1 215 -4 266 282 107 19 chr3 33654725 33654828 -193869750 - L2 LINE L2 -1 3271 3160 186 43 0 0 chr3 33655096 33655119 -193869459 + (T)n Simple_repeat Simple_repeat 1 23 0 258 308 106 0 chr3 33656248 33656352 -193868226 - MIR SINE MIR 0 262 148 1442 216 51 100 chr3 33656360 33657121 -193867457 - MER49 LTR ERV1 -28 895 1 4872 175 17 5 chr3 33657229 33658879 -193865699 - L1PB4 LINE L1 0 6156 4492 1671 52 0 44 chr3 33658990 33659219 -193865359 + LTR17 LTR ERV1 108 326 -454 205 214 34 22 chr3 33659768 33659857 -193864721 + (TTATA)n Simple_repeat Simple_repeat 4 93 0 29 84 0 0 chr3 33659858 33659929 -193864649 + AT_rich Low_complexity Low_complexity 1 71 0 187 80 23 68 chr3 33659950 33660038 -193864540 + (TAA)n Simple_repeat Simple_repeat 3 86 0 418 265 234 4 chr3 33660113 33660370 -193864208 - L1ME3A LINE L1 -48 6122 5807 468 285 19 5 chr3 33660383 33660590 -193863988 - L1M4 LINE L1 -3404 2742 2533 228 282 56 0 chr3 33660590 33660661 -193863917 - MIR3 SINE MIR -24 184 110 539 291 19 0 chr3 33660672 33660830 -193863748 - MIR SINE MIR -10 252 92 195 243 29 71 chr3 33660910 33660980 -193863598 - L2 LINE L2 -6 3266 3200 396 0 0 0 chr3 33662004 33662048 -193862530 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 629 226 0 22 chr3 33662662 33662799 -193861779 + LTR16A LTR ERVL 315 448 -2 231 341 40 0 chr3 33664697 33664823 -193859755 - L1ME3A LINE L1 -1997 5811 5681 1997 142 19 45 chr3 33664942 33665316 -193859262 - THE1B LTR MaLR 0 364 1 327 351 83 66 chr3 33665361 33665723 -193858855 + L2 LINE L2 2853 3220 -52 3849 177 42 7 chr3 33666646 33667787 -193856791 - L1MB3 LINE L1 -143 6040 4855 875 325 13 24 chr3 33667804 33668182 -193856396 + L1PA16 LINE L1 788 1161 -6413 12114 217 40 30 chr3 33668858 33669708 -193854870 + L1PA16 LINE L1 2182 3022 -4582 2245 117 144 5 chr3 33669708 33670083 -193854495 + MSTA LTR MaLR 2 428 0 12114 217 40 30 chr3 33670083 33670331 -193854247 + L1PA16 LINE L1 3022 3266 -4338 1625 184 3 55 chr3 33670331 33670658 -193853920 - AluJb SINE Alu -2 310 1 12114 217 40 30 chr3 33670658 33674884 -193849694 + L1PA16 LINE L1 3266 7601 -3 419 236 32 8 chr3 33674879 33675002 -193849576 - L1MB3 LINE L1 -1286 4860 4735 * 35189 85 15 15 chr3 33674998 33681139 -193843439 - L1PA6 LINE L1 -4 6150 11 1863 200 23 40 chr3 33681157 33681220 -193843358 - L1MB3 LINE L1 -1392 4754 4691 691 164 8 8 chr3 33681220 33681348 -193843230 - L1MC1 LINE L1 0 6333 6206 1863 200 23 40 chr3 33681348 33681854 -193842724 - L1MB3 LINE L1 -1455 4691 4195 346 320 148 8 chr3 33681866 33682231 -193842347 - L1MC1 LINE L1 -1992 5816 5401 2698 240 30 72 chr3 33682297 33683101 -193841477 - L1ME1 LINE L1 -5 6230 5394 252 0 0 0 chr3 33683101 33683129 -193841449 + (TG)n Simple_repeat Simple_repeat 1 28 0 2698 240 30 72 chr3 33683129 33684151 -193840427 - L1ME1 LINE L1 -841 5394 2582 561 275 73 44 chr3 33684141 33684621 -193839957 - L1ME1 LINE L1 -4189 2207 1714 * 216 0 0 0 chr3 33686356 33686380 -193838198 + (T)n Simple_repeat Simple_repeat 1 24 0 484 300 33 46 chr3 33686473 33686713 -193837865 - L2 LINE L2 -4 3309 3073 207 219 0 0 chr3 33687560 33687601 -193836977 + (TA)n Simple_repeat Simple_repeat 2 42 0 1724 161 51 46 chr3 33688300 33688673 -193835905 + THE1C LTR MaLR 1 375 0 2335 121 0 0 chr3 33688736 33689043 -193835535 - AluSg SINE Alu -3 307 1 361 355 91 0 chr3 33689043 33689229 -193835349 - MIR SINE MIR -58 204 2 378 276 51 29 chr3 33689411 33689693 -193834885 + L1M3c LINE L1 165 890 -5321 726 92 0 84 chr3 33689700 33689831 -193834747 - MLT2A2 LTR ERVL -332 121 2 1165 199 8 34 chr3 33689833 33690125 -193834453 + L1MA9 LINE L1 4562 4846 -1300 2056 164 140 0 chr3 33690125 33690439 -193834139 + L1MA9 LINE L1 5784 6185 -127 210 37 0 0 chr3 33690439 33690466 -193834112 + (CA)n Simple_repeat Simple_repeat 2 28 0 2056 164 140 0 chr3 33690466 33690615 -193833963 + L1MA9 LINE L1 6185 6312 0 2262 118 51 25 chr3 33690655 33691010 -193833568 + THE1B LTR MaLR 1 364 0 1597 176 61 58 chr3 33691039 33691402 -193833176 + MLT1A1 LTR MaLR 2 365 0 180 200 0 0 chr3 33692267 33692307 -193832271 + GA-rich Low_complexity Low_complexity 2 41 0 216 345 119 5 chr3 33692890 33693084 -193831494 - MIR SINE MIR -7 255 40 412 237 35 0 chr3 33693104 33693218 -193831360 + MLT1H1 LTR MaLR 1 118 -477 5956 78 12 12 chr3 33693218 33694064 -193830514 + L1MA1 LINE L1 5449 6294 -8 1149 130 0 0 chr3 33694084 33694238 -193830340 - AluSg/x SINE Alu -27 285 132 21 0 0 0 chr3 33694238 33694259 -193830319 + AT_rich Low_complexity Low_complexity 1 21 0 1249 259 50 41 chr3 33694265 33694682 -193829896 + MLT1H1 LTR MaLR 69 489 -66 1776 177 14 0 chr3 33694740 33695023 -193829555 + AluJo SINE Alu 1 287 -25 387 311 86 43 chr3 33696526 33696735 -193827843 + MIR SINE MIR 2 219 -43 296 323 50 0 chr3 33697080 33697179 -193827399 + L2 LINE L2 3209 3312 -1 2021 113 42 58 chr3 33697277 33697657 -193826921 + THE1C LTR MaLR 1 374 -1 477 148 0 0 chr3 33697657 33697738 -193826840 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 392 218 323 8 chr3 33698003 33698136 -193826442 + MER5A DNA MER1_type 15 189 0 381 197 0 14 chr3 33698213 33698284 -193826294 - LTR35 LTR ERV1 -43 575 506 213 39 0 0 chr3 33698287 33698313 -193826265 + (GA)n Simple_repeat Simple_repeat 1 26 0 250 196 0 0 chr3 33698432 33698483 -193826095 - LTR43 LTR ERV1 -325 277 227 3281 232 131 3 chr3 33698493 33699582 -193824996 + L1PB1 LINE L1 6 1383 -5480 * 12478 191 17 8 chr3 33699580 33703066 -193821512 + L1PB1 LINE L1 2984 6507 -360 300 70 0 0 chr3 33703066 33703109 -193821469 + (TA)n Simple_repeat Simple_repeat 2 44 0 12478 191 17 8 chr3 33703109 33703470 -193821108 + L1PB1 LINE L1 6507 6863 -4 30 27 0 0 chr3 33705647 33705684 -193818894 + AT_rich Low_complexity Low_complexity 1 37 0 1508 99 0 0 chr3 33707526 33707718 -193816860 - AluSx SINE Alu -81 231 40 1628 150 74 9 chr3 33707736 33708062 -193816516 + MER47A DNA MER2_type 18 364 -2 369 0 0 0 chr3 33708128 33708169 -193816409 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2925 61 0 12 chr3 33708170 33708581 -193815997 - LTR7 LTR ERV1 -44 406 1 25530 90 10 12 chr3 33708581 33713228 -193811350 - HERVH LTR ERV1 0 7713 3139 14223 101 10 22 chr3 33713207 33715989 -193808589 - HERVH LTR ERV1 -4718 2995 2 * 731 78 0 10 chr3 33715991 33716094 -193808484 - LTR7 LTR ERV1 -2 448 347 756 197 7 14 chr3 33716096 33716243 -193808335 - MER20 DNA MER1_type -71 148 3 592 277 136 38 chr3 33716646 33717043 -193807535 - MLT1J2 LTR MaLR -2 448 13 274 232 250 9 chr3 33718508 33718732 -193805846 - L1ME4a LINE L1 -50 6071 5794 240 293 20 0 chr3 33718750 33718849 -193805729 - L1ME4a LINE L1 -405 5716 5616 2492 54 37 0 chr3 33719316 33719614 -193804964 + AluY SINE Alu 1 309 -2 308 328 0 0 chr3 33719834 33719921 -193804657 - L2 LINE L2 -16 3256 3185 517 86 0 0 chr3 33720337 33720407 -193804171 + AluS SINE Alu 1 70 -242 858 123 0 0 chr3 33720407 33720537 -193804041 + AluSp/q SINE Alu 174 303 -10 246 116 0 0 chr3 33721459 33721502 -193803076 + (TA)n Simple_repeat Simple_repeat 1 43 0 2753 188 45 22 chr3 33722431 33722608 -193801970 - L1MC4 LINE L1 0 8042 7870 2154 151 14 22 chr3 33722608 33722973 -193801605 + THE1B LTR MaLR 1 362 -2 2753 188 45 22 chr3 33722973 33723417 -193801161 - L1MC4 LINE L1 -172 7870 7407 909 210 0 0 chr3 33723503 33723670 -193800908 - FRAM SINE Alu -9 167 1 502 301 78 45 chr3 33723688 33723997 -193800581 - L1ME LINE L1 -401 5720 5402 * 14312 192 31 10 chr3 33723990 33729359 -193795219 - L1PB1 LINE L1 -1 6866 1392 784 229 29 24 chr3 33729336 33729546 -193795032 - L1PB1 LINE L1 -6647 216 6 * 2263 92 0 7 chr3 33730279 33730584 -193793994 - AluY SINE Alu -8 303 1 534 16 0 0 chr3 33730627 33730690 -193793888 + (CA)n Simple_repeat Simple_repeat 1 63 0 243 103 0 0 chr3 33730690 33730729 -193793849 + (TC)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr3 33731579 33731607 -193792971 + AT_rich Low_complexity Low_complexity 1 28 0 244 292 35 26 chr3 33733411 33733524 -193791054 + L1ME LINE L1 5506 5586 -598 1011 273 61 87 chr3 33733524 33734062 -193790516 - MLT1H1 LTR MaLR 0 555 32 372 251 101 14 chr3 33734193 33734338 -193790240 + L1ME LINE L1 5669 5841 -333 2288 107 0 0 chr3 33734591 33734899 -193789679 - AluSq SINE Alu -5 308 1 390 236 28 19 chr3 33735605 33735711 -193788867 + LTR33 LTR ERVL 18 124 -397 263 292 150 0 chr3 33737194 33737314 -193787264 - MLT1L LTR MaLR -477 138 1 369 319 65 18 chr3 33737314 33737483 -193787095 - MIR SINE MIR -21 241 65 285 283 44 35 chr3 33737504 33737617 -193786961 - L2 LINE L2 -36 3277 3164 2771 65 3 0 chr3 33740243 33740597 -193783981 - L1PA7 LINE L1 -1 6153 5799 4559 97 3 3 chr3 33740598 33741260 -193783318 + L1P LINE L1 4397 5058 -1088 2238 310 117 27 chr3 33741260 33742666 -193781912 + L2 LINE L2 1521 3058 -255 246 277 10 40 chr3 33744664 33744765 -193779813 + L1ME3A LINE L1 5689 5786 -2022 721 217 72 0 chr3 33745042 33745194 -193779384 - FRAM SINE Alu -5 171 9 2177 174 38 33 chr3 33745201 33745627 -193778951 + MSTA LTR MaLR 1 428 0 195 42 0 0 chr3 33746073 33746097 -193778481 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 256 321 37 0 chr3 33746349 33746430 -193778148 - MIR SINE MIR -109 153 70 21 0 0 0 chr3 33746469 33746490 -193778088 + AT_rich Low_complexity Low_complexity 1 21 0 272 250 22 11 chr3 33746914 33747006 -193777572 - MLT1L LTR MaLR -10 605 513 21 0 0 0 chr3 33748614 33748635 -193775943 + AT_rich Low_complexity Low_complexity 1 21 0 186 333 56 0 chr3 33749265 33749337 -193775241 + L3b LINE CR1 1170 1245 -338 226 278 174 43 chr3 33749662 33749777 -193774801 - MIR3 SINE MIR -65 143 14 537 303 48 19 chr3 33750021 33750229 -193774349 + MIR SINE MIR 49 262 0 1073 244 30 118 chr3 33750341 33750772 -193773806 + MLT1I LTR MaLR 12 404 -5 21 0 0 0 chr3 33751519 33751540 -193773038 + AT_rich Low_complexity Low_complexity 1 21 0 272 281 79 0 chr3 33752736 33752825 -193771753 - MIR SINE MIR -69 139 44 544 276 35 12 chr3 33753032 33753202 -193771376 + MIR SINE MIR 12 185 -77 268 360 18 0 chr3 33753617 33753731 -193770847 - MIR3 SINE MIR -12 196 81 812 159 118 18 chr3 33754461 33754631 -193769947 - MER5A DNA MER1_type -1 188 2 184 245 75 0 chr3 33756528 33756581 -193767997 + MIR SINE MIR 173 229 -33 552 290 86 26 chr3 33757543 33757812 -193766766 + L1ME3A LINE L1 5877 6161 -9 1064 246 88 13 chr3 33758502 33758876 -193765702 + LTR48B LTR ERV1 243 644 0 2841 176 72 28 chr3 33758878 33759458 -193765120 + LTR48B-int LTR ERV1 1 606 -5725 15013 230 30 19 chr3 33759475 33761830 -193762748 - L1PA15 LINE L1 -4 7599 5271 1842 123 120 30 chr3 33761830 33762163 -193762415 + THE1B LTR MaLR 1 363 -1 15013 230 30 19 chr3 33762163 33765748 -193758830 - L1PA15 LINE L1 -2332 5271 1587 607 337 14 24 chr3 33765752 33766043 -193758535 - L1PA15 LINE L1 -7178 403 116 1314 209 14 87 chr3 33766044 33766388 -193758190 + LTR48B-int LTR ERV1 597 915 -5416 467 200 50 67 chr3 33766478 33766598 -193757980 + LTR48B-int LTR ERV1 1084 1201 -5130 326 239 28 0 chr3 33766606 33766677 -193757901 + tRNA-Glu-GAG tRNA tRNA 3 75 0 207 333 0 0 chr3 33767368 33767434 -193757144 + GA-rich Low_complexity Low_complexity 1 66 0 1828 177 10 6 chr3 33768192 33768503 -193756075 + AluJb SINE Alu 1 312 0 2832 170 55 96 chr3 33768619 33769336 -193755242 + LTR48B-int LTR ERV1 1283 1961 -4370 198 0 0 0 chr3 33769336 33769358 -193755220 + (CG)n Simple_repeat Simple_repeat 1 22 0 2832 170 55 96 chr3 33769358 33769493 -193755085 + LTR48B-int LTR ERV1 1961 2100 -4231 680 164 55 58 chr3 33769509 33769689 -193754889 + LTR48B-int LTR ERV1 1150 3108 -3223 282 216 9 103 chr3 33769699 33769815 -193754763 + LTR48B-int LTR ERV1 3281 3385 -2561 7506 189 64 59 chr3 33769959 33770472 -193754106 + LTR48B-int LTR ERV1 3721 4230 -2101 10760 91 4 4 chr3 33770472 33770814 -193753764 - L1PA8 LINE L1 -7 6165 5824 222 37 0 0 chr3 33770814 33770841 -193753737 + (TA)n Simple_repeat Simple_repeat 2 28 0 10760 91 4 4 chr3 33770841 33772778 -193751800 - L1PA8 LINE L1 -347 5825 3849 7506 189 64 59 chr3 33772778 33774674 -193749904 + LTR48B-int LTR ERV1 4230 6173 -158 416 138 126 46 chr3 33774770 33774857 -193749721 + LTR48B LTR ERV1 3 96 -548 2141 196 81 56 chr3 33774868 33775496 -193749082 + LTR48B LTR ERV1 1 644 0 453 258 78 36 chr3 33775606 33775773 -193748805 + MER5A DNA MER1_type 16 189 0 543 191 113 43 chr3 33776841 33776982 -193747596 + MER20 DNA MER1_type 45 195 -24 11066 34 1 1 chr3 33827760 33829187 -193695391 - L1P LINE L1 -2182 3964 2537 7454 32 0 1 chr3 33829184 33830130 -193694448 + L1P LINE L1 1607 2551 -3595 * 605 326 54 4 chr3 33830461 33830722 -193693856 + MLT1I LTR MaLR 27 300 -109 2563 166 125 22 chr3 33830749 33831332 -193693246 - MER73 LTR ERVL 0 644 2 252 348 33 0 chr3 33831396 33831488 -193693090 - L2 LINE L2 0 3272 3178 518 179 41 41 chr3 33831882 33832027 -193692551 + MLT1I LTR MaLR 439 583 -7 711 210 68 6 chr3 33832452 33832628 -193691950 - MER5A DNA MER1_type 0 189 3 227 302 47 0 chr3 33832645 33832731 -193691847 - MER117 DNA MER1_type -19 178 89 396 0 0 0 chr3 33833135 33833179 -193691399 + (CA)n Simple_repeat Simple_repeat 1 44 0 692 282 56 9 chr3 33833984 33834197 -193690381 - MIR SINE MIR 0 262 40 2001 129 7 23 chr3 33834599 33834902 -193689676 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr3 33835003 33835024 -193689554 + AT_rich Low_complexity Low_complexity 1 21 0 396 342 86 45 chr3 33835079 33835497 -193689081 + L2 LINE L2 237 671 -2643 182 383 94 0 chr3 33835520 33835648 -193688930 + L2 LINE L2 1003 1142 -2172 645 273 134 4 chr3 33835707 33835945 -193688633 - L2 LINE L2 -500 2814 2546 1908 135 7 21 chr3 33836909 33837198 -193687380 + AluSg SINE Alu 1 285 -25 396 167 0 0 chr3 33837610 33837682 -193686896 + (TA)n Simple_repeat Simple_repeat 1 72 0 1162 235 61 12 chr3 33838842 33839170 -193685408 + MER2 DNA MER2_type 1 344 0 284 261 39 23 chr3 33839916 33840046 -193684532 + L1M4 LINE L1 2932 3063 -3083 238 281 146 0 chr3 33840446 33840528 -193684050 + MER5B DNA MER1_type 8 101 -77 1939 115 35 45 chr3 33841439 33841752 -193682826 + AluSx SINE Alu 1 310 -2 379 221 0 0 chr3 33841760 33841837 -193682741 + AluJ/FRAM SINE Alu 226 302 0 350 304 32 0 chr3 33841849 33841974 -193682604 + L1MEc LINE L1 1032 1160 -5236 715 368 97 2 chr3 33841974 33842428 -193682150 - ERVL LTR ERVL -3210 2554 2058 904 160 5 60 chr3 33842506 33842706 -193681872 + L1MA8 LINE L1 5966 6154 -137 1264 125 6 0 chr3 33842706 33842882 -193681696 + AluSp SINE Alu 106 282 -31 644 159 8 0 chr3 33842882 33843014 -193681564 + L1MA8 LINE L1 6154 6286 -5 266 369 34 6 chr3 33843049 33843228 -193681350 - ERVL LTR ERVL -3699 1955 1772 2169 115 0 7 chr3 33844455 33844760 -193679818 + AluSx SINE Alu 1 303 -9 1057 99 0 44 chr3 33846452 33846634 -193677944 + L1MA1 LINE L1 6129 6302 0 1753 187 14 14 chr3 33846642 33847006 -193677572 + L1MD1 LINE L1 5861 6224 -18 24 67 0 0 chr3 33847047 33847092 -193677486 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 33847145 33847166 -193677412 + AT_rich Low_complexity Low_complexity 1 21 0 201 227 0 0 chr3 33847287 33847331 -193677247 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 265 325 0 12 chr3 33848198 33848278 -193676300 - L2 LINE L2 -4 3268 3190 9792 30 0 0 chr3 33848482 33850419 -193674159 + L1PA3 LINE L1 4215 6152 -3 379 285 15 15 chr3 33852306 33852436 -193672142 - MER117 DNA MER1_type -65 132 3 213 357 48 24 chr3 33852600 33852726 -193671852 + L2 LINE L2 3140 3268 -4 567 127 25 0 chr3 33852912 33852991 -193671587 + FRAM SINE Alu 61 141 -35 551 289 13 0 chr3 33853961 33854110 -193670468 + ERVL-C1 LTR ERVL 552 702 -5062 1732 296 62 15 chr3 33854147 33854951 -193669627 + ERVL-C1 LTR ERVL 813 1636 -4018 2072 236 10 20 chr3 33854952 33855448 -193669130 + ERVL-C1 LTR ERVL 3762 4252 -1512 437 278 9 0 chr3 33855462 33855570 -193669008 - ERVL LTR ERVL -1384 4380 4272 1306 229 15 15 chr3 33855570 33855897 -193668681 + MLT1A1 LTR MaLR 28 354 -11 829 199 13 35 chr3 33856019 33856245 -193668333 + ERVL-C1 LTR ERVL 5534 5754 -10 634 230 0 30 chr3 33856247 33856412 -193668166 + MLT2C1 LTR ERVL 1 160 -237 525 276 78 10 chr3 33856294 33856486 -193668092 + MLT1E3 LTR MaLR 64 268 -356 * 23 0 0 0 chr3 33856636 33856659 -193667919 + AT_rich Low_complexity Low_complexity 1 23 0 386 69 17 0 chr3 33856678 33856736 -193667842 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 256 39 0 chr3 33856786 33856864 -193667714 - LTR50 LTR ERVL -714 81 1 282 219 47 0 chr3 33857587 33857651 -193666927 - Charlie8 DNA MER1_type -1001 1416 1350 * 443 224 10 0 chr3 33857649 33857747 -193666831 + MLT2C1 LTR ERVL 21 119 -278 * 543 262 84 19 chr3 33857738 33857952 -193666626 - Charlie8 DNA MER1_type -2152 265 38 29 28 0 0 chr3 33859161 33859197 -193665381 + AT_rich Low_complexity Low_complexity 1 36 0 2243 74 0 14 chr3 33859792 33860077 -193664501 - AluY SINE Alu -30 281 1 253 347 50 8 chr3 33860093 33860214 -193664364 + MIR SINE MIR 19 144 -118 324 239 64 18 chr3 33860553 33860662 -193663916 - MLT1H LTR MaLR 0 549 436 651 226 67 16 chr3 33860856 33861073 -193663505 - MLT1H LTR MaLR -310 239 4 450 265 0 0 chr3 33861076 33861174 -193663404 - MIR SINE MIR -62 146 49 494 283 71 38 chr3 33863019 33863231 -193661347 - MIR SINE MIR -14 248 30 2504 122 0 11 chr3 33864024 33864392 -193660186 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr3 33864440 33864464 -193660114 + (TC)n Simple_repeat Simple_repeat 1 24 0 298 234 26 0 chr3 33864645 33864722 -193659856 - MARNA DNA Mariner -246 340 262 1218 225 103 0 chr3 33864842 33865153 -193659425 + MER2 DNA MER2_type 1 343 -1 287 329 56 40 chr3 33865758 33866007 -193658571 - LTR16B LTR ERVL -175 289 37 269 291 71 39 chr3 33867003 33867130 -193657448 - MIR SINE MIR -57 151 21 237 254 51 0 chr3 33867177 33867236 -193657342 + L2 LINE L2 3208 3269 -3 21 0 0 0 chr3 33867779 33867800 -193656778 + AT_rich Low_complexity Low_complexity 1 21 0 708 216 8 0 chr3 33867807 33867932 -193656646 - FLAM_A SINE Alu -6 127 2 979 229 52 16 chr3 33868003 33868308 -193656270 + L1ME2 LINE L1 5726 6041 -123 284 164 0 0 chr3 33868302 33868357 -193656221 + L1ME3 LINE L1 6100 6154 -8 * 198 231 154 22 chr3 33868814 33868905 -193655673 + MIR SINE MIR 149 251 -11 2192 111 0 7 chr3 33868944 33869241 -193655337 - AluSg SINE Alu -15 295 1 2431 86 3 0 chr3 33869573 33869874 -193654704 - AluSp SINE Alu -11 302 1 349 313 11 57 chr3 33870480 33870656 -193653922 + MIR SINE MIR 13 180 -82 180 0 0 0 chr3 33870673 33870693 -193653885 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2342 84 0 3 chr3 33870700 33870997 -193653581 - AluY SINE Alu -15 296 1 2301 98 55 0 chr3 33870999 33871345 -193653233 - L1PA13 LINE L1 -5 6158 5794 5116 103 1 0 chr3 33871356 33872105 -193652473 + L1P LINE L1 11 760 -5386 299 276 43 86 chr3 33872254 33872417 -193652161 - MLT1F1 LTR MaLR -302 265 110 371 278 111 14 chr3 33872605 33872749 -193651829 - MIR3 SINE MIR -30 178 21 559 271 32 7 chr3 33872753 33872908 -193651670 + MIR SINE MIR 92 250 -12 1535 276 91 79 chr3 33873235 33873996 -193650582 + L2 LINE L2 2192 2991 -322 2248 110 3 3 chr3 33873996 33874306 -193650272 + AluSx SINE Alu 3 312 0 1535 276 91 79 chr3 33874306 33874633 -193649945 + L2 LINE L2 2991 3312 -1 365 371 38 0 chr3 33874795 33874981 -193649597 + L2 LINE L2 2259 2451 -863 731 327 62 62 chr3 33875071 33875655 -193648923 - L2 LINE L2 -2150 1164 581 209 370 20 10 chr3 33875732 33875832 -193648746 + L2 LINE L2 2538 2638 -676 255 280 47 13 chr3 33876095 33876247 -193648331 - MER20B DNA MER1_type 0 219 57 377 86 17 0 chr3 33878070 33878128 -193646450 + (TC)n Simple_repeat Simple_repeat 2 60 0 572 199 210 32 chr3 33878699 33878885 -193645693 + MER20 DNA MER1_type 1 219 0 348 262 48 0 chr3 33878919 33879003 -193645575 + MIR SINE MIR 63 150 -112 181 396 93 27 chr3 33880276 33880501 -193644077 + L2 LINE L2 2934 3173 -99 247 345 24 12 chr3 33881858 33881942 -193642636 - L2 LINE L2 -26 3246 3162 1656 192 6 28 chr3 33882121 33882438 -193642140 - AluJb SINE Alu -2 310 1 1829 154 143 16 chr3 33882781 33883158 -193641420 + MSTA LTR MaLR 1 425 -3 5509 186 10 3 chr3 33883374 33884444 -193640134 + L1P LINE L1 3491 4568 -1578 489 288 76 34 chr3 33884554 33884790 -193639788 + MIR SINE MIR 17 262 0 194 301 119 42 chr3 33884963 33885106 -193639472 + L2 LINE L2 3160 3313 0 187 310 0 35 chr3 33885170 33885228 -193639350 + L2 LINE L2 3209 3264 -8 200 239 43 0 chr3 33886039 33886085 -193638493 - MER91A DNA MER1_type -131 65 18 * 330 225 35 92 chr3 33886066 33886208 -193638370 + MIR SINE MIR 9 142 -120 1483 244 64 20 chr3 33886544 33886983 -193637595 + L1ME3 LINE L1 5682 6139 -23 275 0 29 0 chr3 33887050 33887085 -193637493 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 207 325 8 83 chr3 33888502 33888553 -193636025 - MIR SINE MIR -68 140 87 1022 198 5 0 chr3 33888553 33888740 -193635838 + MER5A DNA MER1_type 1 188 -1 207 325 8 83 chr3 33888740 33888808 -193635770 - MIR SINE MIR -121 87 30 620 304 110 10 chr3 33889209 33889508 -193635070 - MER102a DNA MER1_type -1 329 1 363 248 105 9 chr3 33891193 33891298 -193633280 - MIR3 SINE MIR -47 161 47 232 322 59 17 chr3 33891513 33891631 -193632947 + MIR SINE MIR 59 181 -81 755 206 72 12 chr3 33892927 33893376 -193631202 - L1ME3A LINE L1 -221 6343 5826 198 0 0 0 chr3 33893418 33893440 -193631138 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1677 131 43 46 chr3 33893441 33893723 -193630855 - AluSq SINE Alu -32 281 1 288 0 0 0 chr3 33893729 33893761 -193630817 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 33893791 33893812 -193630766 + AT_rich Low_complexity Low_complexity 1 21 0 42898 33 21 1 chr3 33893814 33899846 -193624732 - L1PA2 LINE L1 0 6155 1 466 305 40 44 chr3 33899848 33900120 -193624458 - L1ME3A LINE L1 -961 5579 5309 1004 282 88 52 chr3 33900121 33900927 -193623651 - L1ME3A LINE L1 -1335 5205 4371 657 304 97 10 chr3 33901090 33901554 -193623024 - L1MEc LINE L1 -4500 2040 1565 2862 96 2 0 chr3 33902475 33902869 -193621709 + L1PA8 LINE L1 5776 6170 -2 595 247 108 86 chr3 33903946 33904594 -193619984 - L1ME4a LINE L1 -12 6109 5448 2296 73 3 7 chr3 33905740 33906041 -193618537 + AluY SINE Alu 2 301 -10 249 331 47 0 chr3 33906150 33906277 -193618301 - L1ME LINE L1 -460 5661 5529 1539 190 53 9 chr3 33906291 33906612 -193617966 + MER2 DNA MER2_type 1 335 -10 43001 30 21 1 chr3 33907096 33913124 -193611454 - L1HS LINE L1 0 6155 4 418 140 43 0 chr3 33913638 33913731 -193610847 + GA-rich Low_complexity Low_complexity 3 99 0 330 245 82 20 chr3 33914542 33914640 -193609938 + MIR SINE MIR 36 139 -123 1889 131 139 18 chr3 33915093 33915430 -193609148 - MER83B LTR ERV1 0 378 1 1037 315 52 26 chr3 33915451 33915877 -193608701 - ERVL LTR ERVL -3478 2286 1850 307 336 21 7 chr3 33915922 33916065 -193608513 - ERVL LTR ERVL -3985 1779 1635 306 206 27 14 chr3 33916336 33916409 -193608169 - LTR33 LTR ERVL -26 495 422 519 17 0 0 chr3 33916800 33916860 -193607718 + (TG)n Simple_repeat Simple_repeat 2 61 0 26 30 0 0 chr3 33916926 33916959 -193607619 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr3 33917232 33917263 -193607315 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 260 13 13 chr3 33918125 33918202 -193606376 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 201 393 0 0 chr3 33918256 33918317 -193606261 - L2 LINE L2 -85 3187 3127 305 285 70 91 chr3 33918819 33919061 -193605517 - MLT1I LTR MaLR -18 391 155 1686 193 3 3 chr3 33919089 33919400 -193605178 + AluJo SINE Alu 1 311 -1 874 260 87 4 chr3 33920332 33920574 -193604004 + MIR SINE MIR 1 262 0 1107 55 0 0 chr3 33920962 33921090 -193603488 + AluY SINE Alu 163 290 -21 22 0 0 0 chr3 33921119 33921141 -193603437 + AT_rich Low_complexity Low_complexity 1 22 0 2864 132 31 50 chr3 33921585 33921972 -193602606 - L1PA16 LINE L1 0 6166 5790 1676 134 0 0 chr3 33921972 33922203 -193602375 - AluJo SINE Alu -81 231 1 2864 132 31 50 chr3 33922203 33922337 -193602241 - L1PA16 LINE L1 -376 5790 5655 525 244 3 22 chr3 33922748 33922931 -193601647 - MLT1I LTR MaLR 0 409 275 392 363 132 16 chr3 33924428 33924800 -193599778 - L2 LINE L2 -639 2675 2261 21 0 0 0 chr3 33925741 33925762 -193598816 + AT_rich Low_complexity Low_complexity 1 21 0 311 281 117 42 chr3 33926123 33926483 -193598095 + L1ME4a LINE L1 5729 6115 -6 383 252 31 84 chr3 33928333 33928465 -193596113 - MLT1E LTR MaLR -421 121 1 183 129 0 0 chr3 33928671 33928702 -193595876 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 345 271 286 0 chr3 33929395 33929535 -193595043 - MER5A DNA MER1_type -2 187 8 256 329 9 72 chr3 33929543 33929765 -193594813 - L2 LINE L2 -4 3309 3102 321 351 9 9 chr3 33929825 33929939 -193594639 - L2 LINE L2 -1 3271 3158 1020 246 58 13 chr3 33930018 33930488 -193594090 + MLT1F1 LTR MaLR 3 567 0 436 309 95 0 chr3 33930518 33930644 -193593934 - L2 LINE L2 -1 3271 3134 26 30 0 0 chr3 33930656 33930689 -193593889 + AT_rich Low_complexity Low_complexity 1 33 0 525 362 86 26 chr3 33930880 33931264 -193593314 - L2 LINE L2 -358 2956 2550 235 365 64 75 chr3 33931306 33931588 -193592990 + L2 LINE L2 2985 3263 -9 445 319 70 25 chr3 33932840 33932997 -193591581 - MIR SINE MIR -76 186 23 540 327 36 5 chr3 33933325 33933545 -193591033 + MER102b DNA MER1_type 85 311 -30 711 274 16 0 chr3 33933736 33933922 -193590656 - MER5A DNA MER1_type 0 189 1 501 17 0 0 chr3 33936358 33936416 -193588162 + (TG)n Simple_repeat Simple_repeat 1 58 0 339 65 0 0 chr3 33936416 33936462 -193588116 + (GA)n Simple_repeat Simple_repeat 2 47 0 1751 199 68 66 chr3 33937755 33938257 -193586321 + MLT1D LTR MaLR 3 505 0 259 222 93 0 chr3 33939554 33939608 -193584970 - L2 LINE L2 -3 3269 3211 181 245 20 0 chr3 33940057 33940106 -193584472 - MIR SINE MIR -78 130 81 243 0 0 0 chr3 33940198 33940225 -193584353 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr3 33941669 33941697 -193582881 + AT_rich Low_complexity Low_complexity 1 28 0 333 333 42 12 chr3 33942470 33942638 -193581940 - MIR SINE MIR -55 207 35 844 259 28 0 chr3 33942795 33943011 -193581567 + MER58A DNA MER1_type 3 224 0 9799 70 7 0 chr3 33944745 33946830 -193577748 + L1PA6 LINE L1 4046 6153 -1 1589 278 93 25 chr3 33946851 33947380 -193577198 - MLT1G LTR MaLR 0 590 26 292 281 257 12 chr3 33949093 33949264 -193575314 - MIR SINE MIR -16 246 34 544 256 57 34 chr3 33949989 33950312 -193574266 - L1ME LINE L1 -316 5805 5474 602 315 195 22 chr3 33950814 33951702 -193572876 + L2 LINE L2 1614 2654 -660 1045 195 188 11 chr3 33951708 33951980 -193572598 - MLT1D LTR MaLR 0 505 186 1242 191 0 42 chr3 33951982 33952218 -193572360 - AluJb SINE Alu -20 292 67 607 206 168 0 chr3 33952218 33952373 -193572205 - MLT1D LTR MaLR -324 181 1 4178 153 18 11 chr3 33952762 33953505 -193571073 + L1MA4 LINE L1 5269 6016 -284 316 146 49 0 chr3 33953509 33953591 -193570987 + L1MB4 LINE L1 6095 6180 0 21 57 0 0 chr3 33953607 33953642 -193570936 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 33953677 33953702 -193570876 + AT_rich Low_complexity Low_complexity 1 25 0 190 269 0 58 chr3 33954568 33954620 -193569958 - L2 LINE L2 -9 3263 3215 29 0 0 0 chr3 33954646 33954675 -193569903 + AT_rich Low_complexity Low_complexity 1 29 0 259 253 27 13 chr3 33955136 33955211 -193569367 - L1ME LINE L1 -496 5625 5550 344 325 64 16 chr3 33955340 33955528 -193569050 - L1ME LINE L1 -658 5463 5267 1039 265 99 31 chr3 33955662 33956270 -193568308 - HAL1b LINE L1 -283 1065 417 275 233 14 14 chr3 33956887 33956960 -193567618 + CT-rich Low_complexity Low_complexity 2 74 0 34 24 0 0 chr3 33957729 33957770 -193566808 + AT_rich Low_complexity Low_complexity 1 41 0 293 242 127 26 chr3 33958115 33958279 -193566299 + LTR39 LTR ERV1 1 375 -408 1037 248 26 23 chr3 33958319 33958624 -193565954 + MER4D LTR ERV1 455 894 -9 22 0 0 0 chr3 33958827 33958849 -193565729 + AT_rich Low_complexity Low_complexity 1 22 0 314 195 182 0 chr3 33960370 33960447 -193564131 - L2 LINE L2 -982 2332 2242 272 237 141 52 chr3 33960631 33960766 -193563812 - L2 LINE L2 -1222 2092 1946 180 0 0 0 chr3 33960916 33960936 -193563642 + (ATTAG)n Simple_repeat Simple_repeat 4 23 0 438 20 0 0 chr3 33960939 33960990 -193563588 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 405 304 95 46 chr3 33961405 33961588 -193562990 - MIR SINE MIR -23 185 25 424 168 2 24 chr3 33962064 33962164 -193562414 + LTR24B LTR ERV1 3 97 -368 766 258 53 42 chr3 33962202 33962562 -193562016 + LTR24B LTR ERV1 206 569 -7 416 147 67 0 chr3 33962591 33962666 -193561912 + MADE1 DNA Mariner 1 80 0 2268 88 0 7 chr3 33962694 33962990 -193561588 - AluY SINE Alu -17 294 1 1286 174 75 23 chr3 33963007 33963272 -193561306 + MLT1C LTR MaLR 5 283 -184 190 54 27 27 chr3 33963293 33963330 -193561248 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr3 33963525 33963547 -193561031 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 33964971 33964993 -193559585 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 33965100 33965123 -193559455 + AT_rich Low_complexity Low_complexity 1 23 0 533 299 97 40 chr3 33965130 33965729 -193558849 + L1ME4a LINE L1 5478 6110 -11 377 288 112 21 chr3 33966944 33967177 -193557401 - L1ME4a LINE L1 -72 6049 5796 361 309 9 0 chr3 33967453 33967563 -193557015 + MIR SINE MIR 137 247 -15 2409 73 0 10 chr3 33968979 33969281 -193555297 - AluSc SINE Alu -10 299 1 629 206 120 40 chr3 33971361 33971536 -193553042 + MER5A DNA MER1_type 1 189 0 276 212 0 30 chr3 33972365 33972441 -193552137 + AluYb8 SINE Alu 132 192 -116 25 0 0 0 chr3 33972445 33972470 -193552108 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr3 33972483 33972525 -193552053 + AT_rich Low_complexity Low_complexity 1 42 0 1810 264 65 7 chr3 33973145 33973729 -193550849 - L1ME3 LINE L1 -5 6157 5540 31446 95 7 13 chr3 33973940 33979409 -193545169 + L1PA7 LINE L1 719 6153 -1 231 242 121 0 chr3 33979575 33979666 -193544912 - L1ME4a LINE L1 0 6121 6020 484 308 96 20 chr3 33979730 33980074 -193544504 - L1ME4a LINE L1 -2124 5684 5315 377 307 86 29 chr3 33980324 33980604 -193543974 - L1ME4a LINE L1 -1776 4370 4075 24 32 0 0 chr3 33980660 33980691 -193543887 + AT_rich Low_complexity Low_complexity 1 31 0 287 340 9 19 chr3 33980811 33980992 -193543586 - L1ME4a LINE L1 -2309 3837 3656 239 310 14 0 chr3 33981626 33981697 -193542881 + MIR SINE MIR 81 152 -56 213 206 16 32 chr3 33981737 33981800 -193542778 + L2 LINE L2 3248 3309 -4 563 227 51 17 chr3 33983119 33983295 -193541283 + L1MA9 LINE L1 6083 6264 -48 26 30 0 0 chr3 33983304 33983337 -193541241 + AT_rich Low_complexity Low_complexity 1 33 0 480 104 26 0 chr3 33984509 33984586 -193539992 - MADE1 DNA Mariner 0 80 2 819 76 0 17 chr3 33984884 33985003 -193539575 - AluY SINE Alu -5 306 190 375 324 99 6 chr3 33985290 33985472 -193539106 + MIR SINE MIR 54 252 -10 305 175 50 0 chr3 33986645 33986725 -193537853 - L1ME4a LINE L1 -3 6118 6035 8666 27 1 1 chr3 33986883 33988685 -193535893 - L1PA3 LINE L1 0 6155 4354 373 337 107 36 chr3 33988744 33988996 -193535582 - L1ME LINE L1 -345 5776 5507 1820 177 92 16 chr3 33990891 33991325 -193533253 + MLT1C LTR MaLR 1 467 0 31 44 0 0 chr3 33991420 33991465 -193533113 + AT_rich Low_complexity Low_complexity 1 45 0 291 250 73 16 chr3 33991580 33991704 -193532874 - L1ME4a LINE L1 -3447 2699 2569 234 314 105 9 chr3 33992437 33992542 -193532036 + MIR3 SINE MIR 87 201 -7 379 76 0 30 chr3 33994840 33994906 -193529672 + (TA)n Simple_repeat Simple_repeat 2 65 0 461 123 0 0 chr3 34094908 34094981 -193429597 + Alu SINE Alu 238 310 -1 470 291 97 31 chr3 34094984 34095246 -193429332 - L1MC4a LINE L1 -1717 6091 5791 2365 82 0 3 chr3 34095246 34095550 -193429028 - AluSc SINE Alu -6 303 1 470 291 97 31 chr3 34095550 34095700 -193428878 - L1MC4a LINE L1 -2017 5791 5652 825 156 0 15 chr3 34095712 34095847 -193428731 + FLAM_C SINE Alu 1 133 0 1174 230 23 30 chr3 34095996 34096426 -193428152 - L1M4 LINE L1 -2970 3987 3561 * 5803 198 55 48 chr3 34096400 34097747 -193426831 - L1M4 LINE L1 -5329 1530 195 1585 161 75 11 chr3 34097747 34098026 -193426552 + AluJo SINE Alu 1 297 -15 5803 198 55 48 chr3 34098026 34098102 -193426476 - L1M4 LINE L1 -6664 195 121 2277 91 7 0 chr3 34098102 34098409 -193426169 - AluSp SINE Alu -4 309 1 5803 198 55 48 chr3 34098409 34098497 -193426081 - L1M4 LINE L1 -6738 121 6 1633 172 7 14 chr3 34098506 34098791 -193425787 - AluJo SINE Alu -19 293 11 266 261 8 34 chr3 34098921 34098986 -193425592 + (CATATA)n Simple_repeat Simple_repeat 1 64 -52 2106 109 3 0 chr3 34098986 34099292 -193425286 + AluSx SINE Alu 1 307 0 266 261 8 34 chr3 34099292 34099344 -193425234 + (CATATA)n Simple_repeat Simple_repeat 64 116 0 457 326 50 60 chr3 34099374 34099592 -193424986 + MIR SINE MIR 33 248 -14 400 244 219 0 chr3 34100833 34100997 -193423581 + MIR SINE MIR 63 262 0 713 218 0 0 chr3 34101291 34101415 -193423163 + FLAM_A SINE Alu 4 127 -6 2361 92 0 0 chr3 34101416 34101721 -193422857 + AluSx SINE Alu 1 305 -7 247 241 0 0 chr3 34102138 34102196 -193422382 + GA-rich Low_complexity Low_complexity 3 60 0 2037 105 14 7 chr3 34102521 34102806 -193421772 + AluSq SINE Alu 1 287 -26 323 309 0 0 chr3 34103305 34103389 -193421189 + L2 LINE L2 3182 3265 -7 204 317 39 39 chr3 34104433 34104537 -193420041 + MIR SINE MIR 48 151 -57 1044 137 24 6 chr3 34106033 34106201 -193418377 - AluSg/x SINE Alu -12 298 128 2309 78 10 3 chr3 34106306 34106614 -193417964 + AluSx SINE Alu 1 310 -2 510 287 36 18 chr3 34106903 34107070 -193417508 + MIR SINE MIR 89 258 -4 264 263 53 0 chr3 34108695 34108771 -193415807 - MIR SINE MIR -168 94 15 180 0 0 0 chr3 34109238 34109258 -193415320 + (A)n Simple_repeat Simple_repeat 1 20 0 217 193 34 57 chr3 34109586 34109674 -193414904 + C-rich Low_complexity Low_complexity 1 86 0 387 306 0 7 chr3 34112290 34112437 -193412141 + GA-rich Low_complexity Low_complexity 2 147 0 2369 64 0 52 chr3 34112778 34113106 -193411472 + AluY SINE Alu 1 311 0 617 247 52 6 chr3 34113824 34113988 -193410590 + MIR SINE MIR 17 186 -61 21 0 0 0 chr3 34114013 34114034 -193410544 + AT_rich Low_complexity Low_complexity 1 21 0 804 178 198 5 chr3 34114051 34114248 -193410330 - MIR SINE MIR -24 238 4 181 269 185 46 chr3 34116081 34116189 -193408389 - MIR3 SINE MIR -84 124 2 261 0 0 0 chr3 34117087 34117116 -193407462 + (TG)n Simple_repeat Simple_repeat 2 30 0 198 91 0 0 chr3 34118894 34118927 -193405651 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 184 0 0 chr3 34119171 34119209 -193405369 + GA-rich Low_complexity Low_complexity 2 39 0 204 40 0 0 chr3 34121418 34121443 -193403135 + (CGG)n Simple_repeat Simple_repeat 1 25 0 208 224 0 17 chr3 34122016 34122074 -193402504 + (CGG)n Simple_repeat Simple_repeat 2 58 0 252 211 41 75 chr3 34122224 34122371 -193402207 + C-rich Low_complexity Low_complexity 2 143 0 219 362 0 0 chr3 34122445 34122539 -193402039 + G-rich Low_complexity Low_complexity 2 95 0 186 43 0 0 chr3 34124514 34124537 -193400041 + (TTA)n Simple_repeat Simple_repeat 2 24 0 243 146 0 0 chr3 34125342 34125383 -193399195 + (TG)n Simple_repeat Simple_repeat 2 42 0 1115 137 0 0 chr3 34126555 34126723 -193397855 + AluSg/x SINE Alu 135 302 -8 243 221 179 43 chr3 34126816 34126956 -193397622 - MIR SINE MIR -1 261 103 197 0 0 67 chr3 34126990 34127020 -193397558 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1972 89 3 21 chr3 34127284 34127566 -193397012 + AluSx SINE Alu 19 295 -17 934 147 52 31 chr3 34127747 34127938 -193396640 - MIR SINE MIR 0 262 68 2262 91 3 0 chr3 34131644 34131941 -193392637 - AluSx SINE Alu -14 298 1 2386 93 0 0 chr3 34132594 34132905 -193391673 - AluSx SINE Alu -1 311 1 1397 165 28 20 chr3 34133510 34133617 -193390961 + AluJo SINE Alu 27 132 -207 2112 117 0 0 chr3 34133617 34133907 -193390671 + AluSc SINE Alu 2 291 -18 1397 165 28 20 chr3 34133907 34134110 -193390468 + AluJo SINE Alu 132 339 0 1471 185 0 4 chr3 34134222 34134482 -193390096 + AluJo SINE Alu 36 294 -18 198 171 0 0 chr3 34137163 34137204 -193387374 + (TATG)n Simple_repeat Simple_repeat 2 42 0 238 267 14 34 chr3 34138881 34139001 -193385577 + C-rich Low_complexity Low_complexity 5 202 0 26 64 0 0 chr3 34139215 34139262 -193385316 + GC_rich Low_complexity Low_complexity 1 47 0 27 87 0 0 chr3 34139490 34139559 -193385019 + GC_rich Low_complexity Low_complexity 1 69 0 35 54 0 0 chr3 34139651 34139707 -193384871 + GC_rich Low_complexity Low_complexity 1 56 0 204 283 183 25 chr3 34241442 34241562 -193283016 - L2 LINE L2 0 3313 3175 2068 185 4 6 chr3 34242717 34243178 -193281400 - MER89 LTR ERV1 0 559 1 29 47 0 0 chr3 34243336 34243379 -193281199 + AT_rich Low_complexity Low_complexity 1 43 0 257 311 33 8 chr3 34243679 34243801 -193280777 - L1ME LINE L1 -514 5607 5483 632 234 0 29 chr3 34243962 34244099 -193280479 - FLAM_A SINE Alu 0 133 1 1566 201 0 22 chr3 34245400 34245718 -193278860 - MLT1A1 LTR MaLR -54 311 1 24 0 0 0 chr3 34246257 34246281 -193278297 + AT_rich Low_complexity Low_complexity 1 24 0 327 279 23 12 chr3 34246328 34246414 -193278164 - L2 LINE L2 -1 3312 3226 2019 130 3 43 chr3 34246468 34246790 -193277788 + AluSx SINE Alu 2 310 -2 195 240 0 40 chr3 34246858 34246908 -193277670 - L2 LINE L2 -85 3228 3181 360 266 19 38 chr3 34247814 34247950 -193276628 + MIR SINE MIR 11 143 -65 454 222 195 41 chr3 34250748 34250969 -193273609 - MIR SINE MIR 0 262 8 22 0 0 0 chr3 34252025 34252047 -193272531 + AT_rich Low_complexity Low_complexity 1 22 0 266 250 79 0 chr3 34252988 34253064 -193271514 - MIR3 SINE MIR -11 197 116 207 0 0 0 chr3 34253720 34253743 -193270835 + (A)n Simple_repeat Simple_repeat 1 23 0 339 259 95 26 chr3 34255050 34255166 -193269412 - MIR SINE MIR -76 186 63 200 342 76 0 chr3 34255262 34255341 -193269237 - MIR SINE MIR -63 145 61 893 316 49 36 chr3 34255552 34256002 -193268576 + LTR16C LTR ERVL 36 491 0 258 383 7 21 chr3 34256020 34256161 -193268417 + MER5B DNA MER1_type 1 139 -39 198 0 0 0 chr3 34256270 34256292 -193268286 + (A)n Simple_repeat Simple_repeat 1 22 0 374 266 89 48 chr3 34256867 34256991 -193267587 - MIR SINE MIR -64 144 16 1548 175 45 29 chr3 34257237 34257615 -193266963 + MLT1B LTR MaLR 7 390 0 384 312 51 51 chr3 34258998 34259251 -193265327 - L2 LINE L2 -561 2753 2501 237 108 0 0 chr3 34259251 34259288 -193265290 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 784 302 9 5 chr3 34260044 34260266 -193264312 - MIR SINE MIR -9 253 31 216 240 0 40 chr3 34260442 34260492 -193264086 - MIR SINE MIR -129 79 32 421 311 50 6 chr3 34262374 34262547 -193262031 + MIR SINE MIR 35 214 -48 1052 249 0 17 chr3 34262556 34262797 -193261781 + LTR53 LTR ERVL 269 505 -14 246 354 0 0 chr3 34263404 34263486 -193261092 + L2 LINE L2 3227 3308 -5 216 261 0 0 chr3 34264575 34264621 -193259957 + (CA)n Simple_repeat Simple_repeat 2 47 0 735 211 60 6 chr3 34266172 34266338 -193258240 + MER5B DNA MER1_type 1 175 -3 1984 146 0 0 chr3 34266375 34266656 -193257922 + AluSx SINE Alu 1 281 -31 15219 33 0 0 chr3 34267178 34269127 -193255451 - L1P LINE L1 -2532 3614 1666 7829 17 0 0 chr3 34269127 34270673 -193253905 + L1PA3 LINE L1 4609 6155 0 231 226 0 0 chr3 34271084 34271137 -193253441 + A-rich Low_complexity Low_complexity 1 53 0 314 280 0 0 chr3 34272967 34273042 -193251536 + L2 LINE L2 3229 3303 -10 205 122 24 24 chr3 34273730 34273771 -193250807 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 222 259 35 0 chr3 34275875 34275933 -193248645 + L2 LINE L2 3253 3312 -1 2479 199 33 7 chr3 34276688 34277260 -193247318 - L1MB7 LINE L1 -13 6171 5585 925 224 24 0 chr3 34278695 34278900 -193245678 + MER2 DNA MER2_type 1 210 -135 31 0 0 0 chr3 34278925 34278956 -193245622 + AT_rich Low_complexity Low_complexity 1 31 0 269 250 208 0 chr3 34279369 34279489 -193245089 + LTR67 LTR ERVL 405 549 -8 1904 150 7 10 chr3 34280221 34280521 -193244057 - AluSx SINE Alu -12 300 2 1913 200 73 43 chr3 34280726 34281216 -193243362 + MLT1D LTR MaLR 1 505 0 1063 273 50 14 chr3 34281244 34281603 -193242975 + MLT1J2 LTR MaLR 56 427 -23 201 299 196 10 chr3 34281610 34281707 -193242871 - L2 LINE L2 -2 3311 3197 462 296 110 38 chr3 34281890 34282235 -193242343 - MLT1J1 LTR MaLR -11 435 66 348 262 78 14 chr3 34282331 34282472 -193242106 - MIR SINE MIR -60 202 53 222 37 0 0 chr3 34282542 34282569 -193242009 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1452 140 183 19 chr3 34283310 34283632 -193240946 - THE1C LTR MaLR 0 375 1 234 62 0 0 chr3 34283634 34283666 -193240912 + (ATG)n Simple_repeat Simple_repeat 3 34 0 11655 42 4 1 chr3 34284257 34285774 -193238804 - L1PA5 LINE L1 -865 5281 3760 7283 37 0 0 chr3 34285774 34286668 -193237910 + L1PA5 LINE L1 5269 6163 0 1597 182 62 55 chr3 34286910 34286936 -193237642 - MLT2D LTR ERVL -7 407 383 495 0 0 0 chr3 34286936 34286991 -193237587 + (TG)n Simple_repeat Simple_repeat 2 56 0 1597 182 62 55 chr3 34286991 34287241 -193237337 - MLT2D LTR ERVL -31 383 125 2287 171 45 0 chr3 34287241 34287645 -193236933 - MSTB LTR MaLR 0 426 5 1597 182 62 55 chr3 34287645 34287768 -193236810 - MLT2D LTR ERVL -289 125 4 276 204 0 0 chr3 34287903 34287957 -193236621 - MER69 DNA AcHobo -11 2515 2462 1724 244 60 15 chr3 34287986 34288589 -193235989 + L1ME2 LINE L1 5526 6155 -9 741 228 45 65 chr3 34288603 34288985 -193235593 - MER69 DNA AcHobo -71 2455 2082 310 206 38 175 chr3 34289513 34289673 -193234905 + MIR SINE MIR 118 255 -7 218 281 70 47 chr3 34289698 34289826 -193234752 + L2 LINE L2 2232 2362 -952 1307 192 13 7 chr3 34289950 34290257 -193234321 - MER33 DNA MER1_type -22 302 1 246 311 46 60 chr3 34290880 34291031 -193233547 + L2 LINE L2 3164 3312 -1 776 271 64 27 chr3 34291557 34291852 -193232726 - MLT2F LTR ERVL -344 319 14 402 281 116 0 chr3 34291876 34292022 -193232556 - MLT1K LTR MaLR 0 588 426 3412 177 10 94 chr3 34292026 34292652 -193231926 + L1MA9 LINE L1 5163 5739 -573 500 92 0 13 chr3 34292652 34292728 -193231850 + MADE1 DNA Mariner 1 75 -5 3412 177 10 94 chr3 34292728 34293113 -193231465 + L1MA9 LINE L1 5739 6155 -157 362 329 7 26 chr3 34293119 34293274 -193231304 - MLT1K LTR MaLR -153 435 284 1054 216 113 21 chr3 34293322 34293605 -193230973 - MLT1D LTR MaLR 0 505 197 1168 234 65 60 chr3 34293687 34293845 -193230733 + MLT2B1 LTR ERVL 105 261 -259 306 73 0 0 chr3 34293845 34293886 -193230692 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1168 234 65 60 chr3 34293886 34294093 -193230485 + MLT2B1 LTR ERVL 261 475 -45 375 23 0 0 chr3 34294093 34294137 -193230441 + (TG)n Simple_repeat Simple_repeat 1 44 0 1168 234 65 60 chr3 34294137 34294184 -193230394 + MLT2B1 LTR ERVL 475 520 0 1020 161 65 15 chr3 34294184 34294383 -193230195 - MLT1D LTR MaLR -296 209 1 243 337 0 0 chr3 34294386 34294478 -193230100 - MLT1K LTR MaLR -342 246 155 315 350 47 33 chr3 34294674 34294888 -193229690 + MIR SINE MIR 34 250 -12 235 309 164 24 chr3 34295862 34296027 -193228551 + MIR3 SINE MIR 14 201 -7 209 357 119 53 chr3 34296055 34296299 -193228279 + L2 LINE L2 2997 3256 -16 516 286 196 0 chr3 34296601 34296790 -193227788 + MIR SINE MIR 13 238 -24 69 48 0 0 chr3 34296813 34296917 -193227661 + AT_rich Low_complexity Low_complexity 1 104 0 469 323 47 25 chr3 34297119 34297234 -193227344 + MIR SINE MIR 23 134 -128 12582 33 3 0 chr3 34297234 34299511 -193225067 + L1PA4 LINE L1 3869 6148 -7 469 323 47 25 chr3 34299511 34299630 -193224948 + MIR SINE MIR 134 262 0 190 336 123 16 chr3 34300442 34300564 -193224014 - MIR SINE MIR -56 152 18 400 244 177 55 chr3 34300982 34301146 -193223432 - MER5A DNA MER1_type -5 184 1 222 304 29 0 chr3 34301434 34301503 -193223075 + L2 LINE L2 2725 2795 -519 476 275 211 31 chr3 34301504 34301864 -193222714 - MLT1J1 LTR MaLR -2 444 20 452 348 50 0 chr3 34302182 34302323 -193222255 + L2 LINE L2 3121 3268 -4 1085 112 5 0 chr3 34302323 34302527 -193222051 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 602 178 5 38 chr3 34302528 34302713 -193221865 + GA-rich Low_complexity Low_complexity 2 180 0 436 226 155 77 chr3 34302950 34303118 -193221460 - MER5A DNA MER1_type 0 189 9 317 354 90 0 chr3 34304524 34304668 -193219910 - MIR SINE MIR -79 183 27 553 203 83 8 chr3 34306598 34306731 -193217847 - MER3 DNA MER1_type -66 143 1 649 332 13 8 chr3 34307628 34307863 -193216715 - MIR SINE MIR -2 260 25 1176 208 118 12 chr3 34308547 34308802 -193215776 + AluJo SINE Alu 7 288 -24 2306 64 4 0 chr3 34308812 34309134 -193215444 + AluY SINE Alu 1 323 0 369 0 0 0 chr3 34309382 34309423 -193215155 + (CA)n Simple_repeat Simple_repeat 1 41 0 198 273 5 41 chr3 34309589 34309689 -193214889 + MIR SINE MIR 49 141 -67 2146 117 0 7 chr3 34310827 34311136 -193213442 + AluY SINE Alu 1 307 -4 1004 88 61 0 chr3 34311136 34311283 -193213295 + AluSg/x SINE Alu 132 287 -23 2086 116 0 0 chr3 34311285 34311598 -193212980 + AluSq SINE Alu 1 313 0 245 356 0 0 chr3 34312061 34312165 -193212413 + A-rich Low_complexity Low_complexity 2 105 0 876 227 92 21 chr3 34313093 34313419 -193211159 + L1ME2 LINE L1 5807 6155 -9 216 67 0 0 chr3 34313436 34313466 -193211112 + (CA)n Simple_repeat Simple_repeat 2 31 0 1744 263 21 23 chr3 34313490 34314107 -193210471 + L1ME3A LINE L1 5527 6142 -28 317 256 120 15 chr3 34314839 34314972 -193209606 - MLT1J LTR MaLR -46 465 319 5121 136 28 0 chr3 34315278 34316222 -193208356 + L1PB4 LINE L1 5169 6137 -19 23 54 0 0 chr3 34316393 34316430 -193208148 + AT_rich Low_complexity Low_complexity 1 37 0 6108 133 61 34 chr3 34316558 34318241 -193206337 - L1MA1 LINE L1 -1 7720 5971 2258 121 0 0 chr3 34318241 34318546 -193206032 + AluSx SINE Alu 1 305 -7 6108 133 61 34 chr3 34318546 34319003 -193205575 - L1MA1 LINE L1 -1750 5971 5528 6673 198 27 15 chr3 34319003 34319610 -193204968 - L1MA1 LINE L1 -2271 5294 4696 2131 116 7 20 chr3 34319610 34319911 -193204667 - AluSg SINE Alu -13 297 1 6673 198 27 15 chr3 34319911 34319947 -193204631 - L1MA1 LINE L1 -2869 4696 4662 2479 80 0 0 chr3 34319947 34320258 -193204320 - AluY SINE Alu 0 311 1 6673 198 27 15 chr3 34320258 34321772 -193202806 - L1MA1 LINE L1 -2903 4662 3110 40160 40 21 2 chr3 34321772 34327804 -193196774 + L1PA3 LINE L1 1 6152 -3 15804 166 49 10 chr3 34327831 34330828 -193193750 - L1MA1 LINE L1 -4438 3127 16 369 309 52 0 chr3 34333338 34333474 -193191104 - L2 LINE L2 0 3313 3171 962 98 33 20 chr3 34333599 34333752 -193190826 - L1PA15 LINE L1 0 6165 6011 1039 255 28 0 chr3 34333771 34334026 -193190552 - L2 LINE L2 -774 2540 2279 209 140 200 0 chr3 34334111 34334161 -193190417 - MIR SINE MIR -110 152 93 925 258 28 9 chr3 34334165 34334382 -193190196 + MER58A DNA MER1_type 1 221 -3 233 330 11 11 chr3 34334390 34334478 -193190100 - MIR SINE MIR -172 90 3 21 36 0 0 chr3 34334509 34334537 -193190041 + AT_rich Low_complexity Low_complexity 1 28 0 214 240 0 130 chr3 34335209 34335309 -193189269 + MIR SINE MIR 168 254 -8 1767 187 82 6 chr3 34336789 34337132 -193187446 + MLT1D LTR MaLR 22 390 -115 1018 254 36 54 chr3 34337154 34337591 -193186987 + MLT1-int LTR MaLR 962 1714 -21 339 25 0 0 chr3 34337825 34337865 -193186713 + (TG)n Simple_repeat Simple_repeat 1 40 0 474 350 91 25 chr3 34339156 34339519 -193185059 + L2 LINE L2 2205 2591 -723 208 315 0 0 chr3 34339678 34339751 -193184827 + (TA)n Simple_repeat Simple_repeat 1 73 0 579 354 16 24 chr3 34339982 34340236 -193184342 - MIR SINE MIR -8 254 3 370 316 0 0 chr3 34340287 34340385 -193184193 - L2 LINE L2 -24 3289 3192 310 337 85 30 chr3 34340392 34340662 -193183916 - L1MC/D LINE L1 -2007 5801 5517 970 266 106 66 chr3 34340820 34342339 -193182239 + L1ME3A LINE L1 2738 4196 -1974 7302 40 8 0 chr3 34342339 34343269 -193181309 + L1PA4 LINE L1 5218 6154 -1 970 266 106 66 chr3 34343269 34344078 -193180500 + L1ME3A LINE L1 4196 6099 -71 824 197 10 42 chr3 34347126 34347319 -193177259 - L1MD2 LINE L1 -474 5885 5699 236 296 11 45 chr3 34347596 34347684 -193176894 + L2 LINE L2 3229 3313 0 400 274 15 37 chr3 34347945 34348080 -193176498 - LTR45 LTR ERV1 -2 523 392 27004 81 5 4 chr3 34348833 34352593 -193171985 - L1P LINE L1 -734 5420 1658 5702 49 3 6 chr3 34352593 34353301 -193171277 + L1PA6 LINE L1 5443 6148 -6 301 337 38 51 chr3 34353339 34353787 -193170791 + L1ME3 LINE L1 23 464 -5959 556 293 78 33 chr3 34354107 34355122 -193169456 + L1ME3 LINE L1 1156 2392 -4549 1722 222 79 54 chr3 34355122 34356329 -193168249 + L1ME3 LINE L1 5488 6726 -233 385 257 0 99 chr3 34356360 34356512 -193168066 + L1ME3 LINE L1 6814 6950 -7 1211 229 37 65 chr3 34356535 34356936 -193167642 - MLT1B LTR MaLR 0 390 1 5699 119 0 0 chr3 34358371 34359375 -193165203 - L1PB2 LINE L1 0 6151 5147 322 59 98 0 chr3 34359375 34359426 -193165152 + MADE1 DNA Mariner 1 56 -24 313 267 0 0 chr3 34359438 34359524 -193165054 - L1PB2 LINE L1 -999 5147 5062 3930 147 36 28 chr3 34359542 34360947 -193163631 + LTR28-int LTR ERV1 632 4818 -399 2351 124 10 10 chr3 34360929 34361316 -193163262 + LTR28-int LTR ERV1 4163 4549 -2988 * 11158 124 13 17 chr3 34361313 34361694 -193162884 + LTR28-int LTR ERV1 2250 2631 -2586 3539 88 47 4 chr3 34361694 34362184 -193162394 - MER9 LTR ERVK 0 511 1 11158 124 13 17 chr3 34362184 34363691 -193160887 + LTR28-int LTR ERV1 2631 5058 -159 2436 169 30 82 chr3 34363715 34364436 -193160142 + LTR28 LTR ERV1 2 636 0 345 326 103 34 chr3 34364447 34364680 -193159898 - HAL1 LINE L1 -1841 666 418 21 71 0 0 chr3 34364707 34364749 -193159829 + AT_rich Low_complexity Low_complexity 1 42 0 401 173 387 40 chr3 34364804 34364977 -193159601 - AluJo SINE Alu -109 193 72 347 323 75 0 chr3 34365030 34365231 -193159347 - HAL1 LINE L1 -2282 225 10 10222 220 55 11 chr3 34365468 34369038 -193155540 + L1PA13 LINE L1 1 3739 -3058 21 0 0 0 chr3 34369307 34369328 -193155250 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr3 34370300 34370328 -193154250 + (GA)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr3 34370430 34370474 -193154104 + AT_rich Low_complexity Low_complexity 1 44 0 27 0 0 0 chr3 34370958 34370985 -193153593 + AT_rich Low_complexity Low_complexity 1 27 0 354 295 90 18 chr3 34371126 34371292 -193153286 + L2 LINE L2 2709 2886 -428 1317 247 121 50 chr3 34371294 34371848 -193152730 + MLT1E LTR MaLR 1 593 0 626 124 53 9 chr3 34371916 34372029 -193152549 - L1PA11 LINE L1 -2 6172 6055 243 307 43 36 chr3 34372044 34372184 -193152394 + L2 LINE L2 3008 3148 -165 237 203 17 0 chr3 34372214 34372273 -193152305 - HAL1 LINE L1 -4 2503 2444 2383 116 11 8 chr3 34372619 34372990 -193151588 + L1PB1 LINE L1 5780 6151 0 2556 48 3 10 chr3 34373026 34373339 -193151239 + AluY SINE Alu 1 311 0 361 337 60 18 chr3 34374793 34374959 -193149619 - MIR3 SINE MIR -6 202 30 434 337 161 20 chr3 34375238 34375724 -193148854 - L2 LINE L2 -106 3207 2654 431 303 62 15 chr3 34376264 34376459 -193148119 - MIR SINE MIR -31 231 28 204 97 0 0 chr3 34377741 34377772 -193146806 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 206 300 100 33 chr3 34378315 34378435 -193146143 - MIR SINE MIR -34 228 101 329 299 198 38 chr3 34378664 34378821 -193145757 - MIR SINE MIR -49 213 32 241 227 187 13 chr3 34378935 34379010 -193145568 - MIR SINE MIR -100 162 75 251 229 72 6 chr3 34380060 34380226 -193144352 + (TA)n Simple_repeat Simple_repeat 2 178 0 205 295 137 32 chr3 34380368 34380463 -193144115 - MIR SINE MIR -123 139 35 2672 79 3 0 chr3 34380517 34380872 -193143706 - L1PA7 LINE L1 -3 6151 5796 2369 151 63 14 chr3 34381477 34381921 -193142657 + L1PB4 LINE L1 5679 6144 -12 261 340 11 75 chr3 34381930 34382021 -193142557 - MIR SINE MIR -38 224 129 2884 10 0 0 chr3 34382021 34382335 -193142243 - AluYb8 SINE Alu -4 314 1 261 340 11 75 chr3 34382335 34382468 -193142110 - MIR SINE MIR -133 129 17 315 0 0 0 chr3 34382468 34382503 -193142075 + (CA)n Simple_repeat Simple_repeat 1 35 0 461 257 28 0 chr3 34382549 34382658 -193141920 + MER5B DNA MER1_type 66 177 -1 180 0 0 0 chr3 34382668 34382688 -193141890 + (CAT)n Simple_repeat Simple_repeat 2 21 0 902 253 181 39 chr3 34383973 34384381 -193140197 - L2 LINE L2 0 3313 2848 23 0 0 0 chr3 34384430 34384453 -193140125 + AT_rich Low_complexity Low_complexity 1 23 0 1421 87 20 15 chr3 34384453 34384648 -193139930 + AluY SINE Alu 106 301 -10 296 346 27 53 chr3 34385340 34385528 -193139050 + MIR SINE MIR 37 219 -43 951 288 93 68 chr3 34385694 34386451 -193138127 + L2 LINE L2 2507 3304 -9 2156 115 6 10 chr3 34386735 34387048 -193137530 + AluSx SINE Alu 1 312 0 2760 273 65 38 chr3 34387536 34389073 -193135505 - L1MEc LINE L1 -4306 2090 512 1391 279 77 19 chr3 34389114 34389644 -193134934 - L1MEc LINE L1 -5754 642 82 2448 57 14 0 chr3 34389895 34390192 -193134386 + AluY SINE Alu 1 301 -10 548 284 103 81 chr3 34390766 34391311 -193133267 + L1ME4a LINE L1 5561 6117 -4 382 246 26 0 chr3 34391626 34391740 -193132838 + MER96B DNA MER1_type? 300 416 -1 1903 135 35 7 chr3 34391906 34392188 -193132390 - AluSx SINE Alu -22 290 1 288 238 191 8 chr3 34393193 34393319 -193131259 - L1ME3A LINE L1 -7 6163 6015 1759 188 18 36 chr3 34393339 34393389 -193131189 + MLT2C1 LTR ERVL 21 70 -327 1889 166 3 0 chr3 34393389 34393685 -193130893 + AluSx SINE Alu 1 297 -15 1759 188 18 36 chr3 34393685 34393975 -193130603 + MLT2C1 LTR ERVL 70 356 -41 378 61 0 0 chr3 34393975 34394024 -193130554 + (TG)n Simple_repeat Simple_repeat 2 50 0 1759 188 18 36 chr3 34394024 34394066 -193130512 + MLT2C1 LTR ERVL 356 397 0 368 264 101 34 chr3 34394174 34394352 -193130226 - MIR SINE MIR -4 258 69 181 345 0 0 chr3 34394716 34394774 -193129804 - MIR3 SINE MIR -3 205 148 204 308 117 42 chr3 34394832 34394952 -193129626 - MIR SINE MIR -24 238 110 22 35 0 0 chr3 34395927 34395956 -193128622 + AT_rich Low_complexity Low_complexity 1 29 0 185 368 28 9 chr3 34396124 34396230 -193128348 + MIR3 SINE MIR 15 122 -86 240 277 134 8 chr3 34396341 34396460 -193128118 - MIR SINE MIR -30 232 99 203 263 92 13 chr3 34400275 34400351 -193124227 - MIR SINE MIR -93 169 88 290 304 246 0 chr3 34402030 34402323 -193122255 - LTR33A LTR ERVL -28 495 131 1636 132 18 58 chr3 34403150 34403528 -193121050 + MER67C LTR ERV1 1 388 -243 214 243 14 40 chr3 34403552 34403626 -193120952 + L2 LINE L2 235 306 -3008 296 171 79 13 chr3 34403634 34403710 -193120868 + MER67D LTR ERV1 434 514 0 973 283 56 19 chr3 34404114 34404524 -193120054 + LTR16A LTR ERVL 26 450 0 256 262 143 62 chr3 34404605 34404815 -193119763 - MIR SINE MIR 0 262 36 230 346 69 31 chr3 34405409 34405539 -193119039 - L2 LINE L2 0 3272 3138 697 219 6 0 chr3 34405609 34405778 -193118800 - L1 LINE L1 -877 5269 5100 196 309 87 47 chr3 34405822 34405971 -193118607 - L2 LINE L2 -228 3044 2890 404 268 10 0 chr3 34406077 34406174 -193118404 - L2 LINE L2 0 3272 3175 604 225 59 6 chr3 34406239 34406408 -193118170 + MER5B DNA MER1_type 1 178 0 744 213 8 0 chr3 34406416 34406543 -193118035 - MER5A DNA MER1_type 0 189 62 4602 160 20 12 chr3 34406543 34407677 -193116901 - L1PB4 LINE L1 -1 6155 5006 1227 205 81 0 chr3 34407677 34407975 -193116603 + L1PB4 LINE L1 4667 4988 -1158 331 261 0 0 chr3 34407976 34408045 -193116533 - MER5A DNA MER1_type -116 73 5 440 263 254 29 chr3 34408319 34408524 -193116054 + MIR SINE MIR 9 259 -3 21 82 0 0 chr3 34409539 34409588 -193114990 + AT_rich Low_complexity Low_complexity 1 49 0 442 239 194 39 chr3 34409794 34409974 -193114604 - MIR SINE MIR -8 254 47 3997 191 52 5 chr3 34409980 34411088 -193113490 - L1MB8 LINE L1 0 6178 5021 11475 103 82 7 chr3 34411101 34411352 -193113226 - L1MA1 LINE L1 -40 6272 6041 666 97 0 26 chr3 34411352 34411466 -193113112 - L1MA1 LINE L1 0 6302 6192 11475 103 82 7 chr3 34411466 34414115 -193110463 - L1MA1 LINE L1 -271 6041 3161 7522 28 2 0 chr3 34414115 34415705 -193108873 + L1PA4 LINE L1 4557 6148 -7 314 322 0 9 chr3 34415709 34415824 -193108754 + MIR SINE MIR 149 262 0 190 336 123 16 chr3 34416636 34416758 -193107820 - MIR SINE MIR -56 152 18 381 250 177 55 chr3 34417176 34417340 -193107238 - MER5A DNA MER1_type -5 184 1 222 304 29 0 chr3 34417628 34417697 -193106881 + L2 LINE L2 2725 2795 -519 476 275 211 31 chr3 34417698 34418058 -193106520 - MLT1J1 LTR MaLR -2 444 20 452 348 50 0 chr3 34418376 34418517 -193106061 + L2 LINE L2 3121 3268 -4 1085 112 5 0 chr3 34418517 34418721 -193105857 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 591 183 11 33 chr3 34418722 34418902 -193105676 + GA-rich Low_complexity Low_complexity 2 177 0 227 79 26 0 chr3 34418902 34418940 -193105638 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 436 226 155 77 chr3 34419145 34419313 -193105265 - MER5A DNA MER1_type 0 189 9 317 354 90 0 chr3 34420721 34420865 -193103713 - MIR SINE MIR -79 183 27 240 289 21 41 chr3 34422505 34422602 -193101976 - L2 LINE L2 -243 3029 2935 192 40 0 0 chr3 34422894 34422919 -193101659 + (TTG)n Simple_repeat Simple_repeat 2 26 0 225 378 25 25 chr3 34423598 34423717 -193100861 - L2 LINE L2 0 3272 3154 252 315 8 69 chr3 34423933 34424063 -193100515 - MIR3 SINE MIR -4 204 83 1538 209 73 104 chr3 34424205 34424428 -193100150 + MLT1F1 LTR MaLR 5 233 -334 297 0 0 0 chr3 34424428 34424461 -193100117 + (CA)n Simple_repeat Simple_repeat 1 33 0 1538 209 73 104 chr3 34424461 34424729 -193099849 + MLT1F1 LTR MaLR 233 481 -86 1890 167 0 3 chr3 34426089 34426394 -193098184 + AluJo SINE Alu 1 304 -8 1402 249 7 27 chr3 34426439 34426657 -193097921 - L1ME1 LINE L1 -5 6161 5953 1795 203 103 61 chr3 34426657 34427143 -193097435 - MLT1F1 LTR MaLR 0 567 54 1865 162 14 3 chr3 34427143 34427439 -193097139 + AluSx SINE Alu 1 299 -13 1795 203 103 61 chr3 34427439 34427495 -193097083 - MLT1F1 LTR MaLR -513 54 2 1402 249 7 27 chr3 34427495 34427689 -193096889 - L1ME1 LINE L1 -213 5953 5757 23332 122 17 64 chr3 34427755 34433635 -193090943 + L1P3 LINE L1 12 5530 -624 * 43103 46 3 3 chr3 34433604 34439749 -193084829 + L1PA3 LINE L1 7 6150 -5 183 42 0 0 chr3 34439756 34439780 -193084798 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 4962 75 10 1 chr3 34439783 34440454 -193084124 + L1PA7 LINE L1 5476 6152 -2 29 84 0 0 chr3 34443798 34443869 -193080709 + AT_rich Low_complexity Low_complexity 1 71 0 371 330 60 14 chr3 34444111 34444329 -193080249 - L1M4 LINE L1 -2995 3151 2924 24 67 0 0 chr3 34444544 34444589 -193079989 + AT_rich Low_complexity Low_complexity 1 45 0 198 209 0 0 chr3 34444730 34444773 -193079805 + (TA)n Simple_repeat Simple_repeat 1 43 0 1165 210 102 67 chr3 34444967 34445400 -193079178 + L1M4 LINE L1 4680 5127 -1019 451 288 132 69 chr3 34445400 34445719 -193078859 + MLT1I LTR MaLR 71 409 0 21 82 0 0 chr3 34447586 34447635 -193076943 + AT_rich Low_complexity Low_complexity 1 49 0 447 239 194 39 chr3 34447841 34448021 -193076557 - MIR SINE MIR -8 254 47 4216 190 54 5 chr3 34448027 34449134 -193075444 - L1MB8 LINE L1 0 6178 5021 12140 99 77 7 chr3 34449147 34449398 -193075180 - L1MA1 LINE L1 -27 6277 6045 672 97 0 26 chr3 34449398 34449512 -193075066 - L1MA1 LINE L1 0 6302 6192 12140 99 77 7 chr3 34449512 34452161 -193072417 - L1MA1 LINE L1 -259 6045 3161 7244 34 7 7 chr3 34452161 34453760 -193070818 + L1PA4 LINE L1 4557 6155 0 8721 195 18 12 chr3 34453779 34456764 -193067814 + L1PA16 LINE L1 3165 6166 0 299 266 18 18 chr3 34457314 34457423 -193067155 - Charlie8 DNA MER1_type -1930 487 379 392 327 84 5 chr3 34457745 34457947 -193066631 + Charlie8 DNA MER1_type 1 218 -2199 192 330 120 65 chr3 34457982 34458182 -193066396 + L2 LINE L2 3062 3272 0 257 277 0 0 chr3 34458216 34458281 -193066297 - L2 LINE L2 -7 3265 3201 462 180 0 0 chr3 34458733 34458822 -193065756 + L1MA10 LINE L1 6232 6320 -14 2633 192 20 14 chr3 34458831 34459325 -193065253 - MLT2B1 LTR ERVL -23 497 1 239 360 0 0 chr3 34459352 34459441 -193065137 - MIR SINE MIR -6 256 168 258 105 0 0 chr3 34459540 34459578 -193065000 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr3 34460543 34460564 -193064014 + AT_rich Low_complexity Low_complexity 1 21 0 344 290 92 23 chr3 34462810 34462941 -193061637 - MIR SINE MIR -21 241 102 3498 151 7 4 chr3 34463707 34464613 -193059965 + L1MC1 LINE L1 5381 6332 -1 530 271 129 44 chr3 34465841 34466136 -193058442 + MER5C DNA MER1_type 4 323 -1 350 309 26 78 chr3 34468287 34468478 -193056100 + MIR SINE MIR 50 230 -32 18615 38 2 5 chr3 34469472 34472548 -193052030 - L1PA3 LINE L1 -13 6142 3078 280 0 24 24 chr3 34473666 34473707 -193050871 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 180 178 22 22 chr3 34473733 34473778 -193050800 + MIR SINE MIR 97 141 -67 2080 162 71 2 chr3 34474630 34475026 -193049552 + MER95 LTR ERV 9 431 0 623 154 0 18 chr3 34475577 34475687 -193048891 - L1PB4 LINE L1 0 6156 6049 602 295 136 45 chr3 34475723 34476108 -193048470 - HAL1 LINE L1 -700 1807 1458 2107 119 57 23 chr3 34476108 34476460 -193048118 - THE1B LTR MaLR 0 364 1 602 295 136 45 chr3 34476460 34476620 -193047958 - HAL1 LINE L1 -1049 1458 1314 1113 166 57 81 chr3 34476620 34476952 -193047626 - MER33 DNA MER1_type 0 324 1 602 295 136 45 chr3 34476952 34477331 -193047247 - HAL1 LINE L1 -1193 1314 798 671 241 75 10 chr3 34477689 34477888 -193046690 - LTR16A1 LTR ERVL -13 444 233 267 258 82 10 chr3 34477872 34477969 -193046609 - LTR16A1 LTR ERVL -352 105 2 * 290 250 109 0 chr3 34477969 34478061 -193046517 - HAL1 LINE L1 -2398 109 8 336 312 116 21 chr3 34478601 34478790 -193045788 - MIR SINE MIR -36 226 20 1641 125 106 4 chr3 34479735 34479999 -193044579 - AluSx SINE Alu -21 291 1 1943 47 0 0 chr3 34480216 34480472 -193044106 - L1P LINE L1 -2683 3463 3208 5003 35 7 3 chr3 34480472 34481070 -193043508 + L1PA5 LINE L1 5548 6153 -1 1450 211 110 15 chr3 34481093 34481492 -193043086 + MER110 LTR ERV1 1 437 -54 462 353 49 0 chr3 34481533 34481737 -193042841 - MIR SINE MIR -17 245 32 341 292 99 35 chr3 34482165 34483139 -193041439 - L1ME LINE L1 -4639 1622 533 315 0 0 0 chr3 34483495 34483530 -193041048 + (A)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr3 34483621 34483652 -193040926 + AT_rich Low_complexity Low_complexity 1 31 0 2254 107 0 0 chr3 34485058 34485356 -193039222 - AluSx SINE Alu -13 299 2 912 223 122 14 chr3 34485476 34485763 -193038815 - L1ME3A LINE L1 -9 6161 5844 280 244 52 37 chr3 34485795 34485930 -193038648 + MER113 DNA MER1_type? 1 137 -384 25 65 0 0 chr3 34485968 34486014 -193038564 + AT_rich Low_complexity Low_complexity 1 46 0 210 299 30 0 chr3 34486732 34486799 -193037779 + MIR SINE MIR 72 140 -68 1757 284 95 36 chr3 34487222 34488692 -193035886 + L1ME1 LINE L1 320 1853 -4227 7510 34 0 0 chr3 34488692 34490048 -193034530 + L1PA4 LINE L1 4781 6153 -2 1757 284 95 36 chr3 34490048 34490405 -193034173 + L1ME1 LINE L1 1853 2188 -3892 2337 254 135 17 chr3 34490712 34491928 -193032650 + L1ME1 LINE L1 2278 3636 -2444 2037 258 58 27 chr3 34492032 34492706 -193031872 + L1ME1 LINE L1 5405 6099 -1 275 310 0 0 chr3 34493026 34493126 -193031452 + L1ME LINE L1 3265 3364 -2716 851 272 25 11 chr3 34493278 34493557 -193031021 + L1ME LINE L1 3595 3877 -2203 318 344 27 36 chr3 34494014 34494235 -193030343 + L1ME LINE L1 5389 5607 -448 28216 132 21 51 chr3 34494322 34495799 -193028779 + L1PA8 LINE L1 2 1522 -4650 2119 139 0 0 chr3 34495799 34496101 -193028477 + AluSc SINE Alu 1 302 -7 28216 132 21 51 chr3 34496101 34501001 -193023577 + L1PA8 LINE L1 1522 6170 -2 626 122 9 0 chr3 34501013 34501120 -193023458 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 234 250 0 26 chr3 34501274 34501350 -193023228 + L1ME LINE L1 5757 5830 -225 1452 242 45 45 chr3 34501371 34501876 -193022702 + MLT1D LTR MaLR 1 505 0 239 219 0 0 chr3 34501899 34501940 -193022638 - MER8 DNA MER2_type 0 239 199 2521 159 58 4 chr3 34501940 34502392 -193022186 - MER66A LTR ERV1 0 478 3 13790 136 7 18 chr3 34502396 34504535 -193020043 - MER66A-int LTR ERV1 -6 6670 4557 346 193 59 160 chr3 34504535 34504654 -193019924 - MER4D LTR ERV1 -744 159 53 2789 172 45 41 chr3 34504654 34505633 -193018945 - MER66A-int LTR ERV1 -2224 4452 3149 463 146 0 0 chr3 34505634 34505716 -193018862 - MER66-int LTR ERV1 -3226 3450 3369 3716 67 2 6 chr3 34505716 34506206 -193018372 - L1PA6 LINE L1 -1 6153 5666 36636 91 10 17 chr3 34507230 34513416 -193011162 - L1PA3 LINE L1 -3 6152 11 4571 207 53 48 chr3 34513604 34514630 -193009948 - MER66-int LTR ERV1 -3310 3366 2336 2655 198 54 1 chr3 34514626 34515162 -193009416 - MER66-int LTR ERV1 -4515 2161 1562 * 1080 193 20 71 chr3 34515182 34515436 -193009142 - MER66A LTR ERV1 -237 241 1 1997 182 20 10 chr3 34515438 34515828 -193008750 + Tigger2a DNA MER2_type 41 434 0 25 65 0 0 chr3 34515900 34515946 -193008632 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr3 34515989 34516015 -193008563 + AT_rich Low_complexity Low_complexity 1 26 0 3039 136 131 25 chr3 34516592 34517157 -193007421 + MER51A LTR ERV1 1 625 -9 747 219 0 83 chr3 34517573 34517778 -193006800 + MER5A DNA MER1_type 1 188 -1 874 225 48 0 chr3 34518160 34518347 -193006231 - MIR SINE MIR -66 196 1 388 295 109 36 chr3 34519516 34519709 -193004869 + MLT1J2 LTR MaLR 240 446 -4 1948 110 0 57 chr3 34519801 34520100 -193004478 + AluY SINE Alu 1 282 -29 808 19 37 0 chr3 34520105 34520213 -193004365 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 3399 209 70 50 chr3 34520536 34521806 -193002772 - L1ME2 LINE L1 -10 6154 4855 662 243 21 16 chr3 34522692 34522881 -193001697 + L1MC5 LINE L1 7048 7237 -724 24 0 0 0 chr3 34523032 34523056 -193001522 + AT_rich Low_complexity Low_complexity 1 24 0 1220 228 36 65 chr3 34523060 34523673 -193000905 + L1MC5 LINE L1 7316 7910 -51 333 278 42 7 chr3 34524793 34524937 -192999641 + MER103 DNA DNA 11 159 -7 259 317 12 0 chr3 34524985 34525067 -192999511 - MIR3 SINE MIR -49 159 77 320 279 66 22 chr3 34526380 34526516 -192998062 + MER91A DNA MER1_type 1 142 -54 2324 212 16 18 chr3 34526973 34527474 -192997104 - MLT1D LTR MaLR -5 500 1 305 254 46 101 chr3 34527682 34527899 -192996679 - L1MC4 LINE L1 -9 8033 7829 426 215 99 84 chr3 34527943 34528134 -192996444 - L1ME2 LINE L1 -20 6144 5951 305 321 147 9 chr3 34528558 34528776 -192995802 + MIR SINE MIR 13 260 -2 448 317 44 11 chr3 34529699 34529879 -192994699 + LTR16C LTR ERVL 306 491 0 1002 306 70 25 chr3 34529887 34530386 -192994192 + L2 LINE L2 2554 3062 -251 7415 39 0 2 chr3 34530580 34531703 -192992875 + L1PA4 LINE L1 5032 6152 -3 1571 188 0 50 chr3 34531744 34532063 -192992515 + AluJo SINE Alu 1 303 -9 27 49 0 0 chr3 34532128 34532169 -192992409 + AT_rich Low_complexity Low_complexity 1 41 0 302 232 37 73 chr3 34532212 34532376 -192992202 + L1ME LINE L1 5547 5704 -417 233 333 8 77 chr3 34533027 34533144 -192991434 - MLT1J2 LTR MaLR -93 357 249 2762 188 43 37 chr3 34533404 34534028 -192990550 - MER92B LTR ERV1 -8 628 1 1903 198 61 0 chr3 34534045 34534388 -192990190 - MLT1A1 LTR MaLR -1 364 1 746 263 202 25 chr3 34534402 34534759 -192989819 + MLT1J2 LTR MaLR 1 420 -30 224 283 0 0 chr3 34534841 34534894 -192989684 + MIR SINE MIR 210 262 0 209 302 103 32 chr3 34535723 34535849 -192988729 + MIR SINE MIR 20 154 -108 317 280 59 17 chr3 34535987 34536105 -192988473 - L2 LINE L2 -2 3311 3189 1388 256 116 11 chr3 34536135 34536514 -192988064 - LTR16C LTR ERVL -2 489 71 293 324 90 7 chr3 34536827 34536972 -192987606 - MIR SINE MIR -1 261 105 268 256 103 8 chr3 34537618 34537735 -192986843 - MIR SINE MIR -16 246 119 277 204 0 0 chr3 34539209 34539258 -192985320 - MIR3 SINE MIR -11 197 149 262 354 71 0 chr3 34539908 34540021 -192984557 - MIR SINE MIR -64 144 24 213 289 59 59 chr3 34540985 34541120 -192983458 - MIR SINE MIR -18 244 110 203 234 36 108 chr3 34541173 34541284 -192983294 - L2 LINE L2 -56 3257 3155 481 290 53 30 chr3 34543042 34543211 -192981367 + MIR SINE MIR 3 175 -87 23 33 0 0 chr3 34543525 34543555 -192981023 + AT_rich Low_complexity Low_complexity 1 30 0 1456 202 46 49 chr3 34543575 34543941 -192980637 - MLT1A1 LTR MaLR 0 365 1 7747 53 0 0 chr3 34544170 34545129 -192979449 - L1PA4 LINE L1 -4099 2047 1089 * 28001 32 2 5 chr3 34545126 34549229 -192975349 + L1PA4 LINE L1 2062 6152 -3 547 263 79 41 chr3 34549534 34549879 -192974699 - LTR18B LTR ERVL 0 614 1 231 340 123 0 chr3 34549882 34550044 -192974534 + L2 LINE L2 2472 2653 -661 644 164 190 0 chr3 34550050 34550166 -192974412 - FLAM_C SINE Alu -4 139 2 2320 203 22 18 chr3 34550390 34550838 -192973740 - LTR32 LTR ERVL 0 471 22 338 218 58 23 chr3 34551081 34551168 -192973410 + MLT1J2 LTR MaLR 361 450 0 793 298 110 21 chr3 34551373 34551799 -192972779 + LTR16B LTR ERVL 1 464 0 234 295 105 0 chr3 34551832 34551927 -192972651 - MIR SINE MIR -76 186 82 227 294 101 73 chr3 34552064 34552173 -192972405 + L2 LINE L2 3123 3234 -38 297 0 0 0 chr3 34552941 34552974 -192971604 + (A)n Simple_repeat Simple_repeat 1 33 0 926 190 42 118 chr3 34553028 34553265 -192971313 + AluJo SINE Alu 61 279 -33 311 0 26 0 chr3 34553265 34553304 -192971274 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 897 239 16 5 chr3 34554057 34554241 -192970337 + MER5A DNA MER1_type 2 187 -2 4189 67 0 2 chr3 34554602 34555122 -192969456 + LTR17 LTR ERV1 262 780 0 26160 48 4 7 chr3 34555177 34557094 -192967484 + HERV17 LTR ERV1 1953 3859 -4767 2255 62 66 3 chr3 34557094 34557382 -192967196 + AluY SINE Alu 1 306 -5 26160 48 4 7 chr3 34557382 34558588 -192965990 + HERV17 LTR ERV1 3859 5067 -3559 10641 53 0 23 chr3 34558579 34559903 -192964675 + HERV17 LTR ERV1 6902 8195 -431 * 652 102 0 31 chr3 34559898 34559996 -192964582 + HERV17 LTR ERV1 8161 8255 -371 * 6605 71 18 6 chr3 34559996 34560818 -192963760 + L1PA7 LINE L1 5310 6141 -13 614 13 0 13 chr3 34560821 34560897 -192963681 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 433 309 93 10 chr3 34561005 34561199 -192963379 - MIR SINE MIR -51 211 2 451 292 157 42 chr3 34561480 34561792 -192962786 + MER113 DNA MER1_type? 171 518 -3 276 241 0 0 chr3 34562820 34562874 -192961704 - MLT1H LTR MaLR 0 549 496 543 311 63 60 chr3 34562911 34563213 -192961365 - MLT1H LTR MaLR -197 352 50 357 47 0 0 chr3 34563647 34563690 -192960888 + MADE1 DNA Mariner 3 45 -35 22 35 0 0 chr3 34564121 34564150 -192960428 + AT_rich Low_complexity Low_complexity 1 29 0 2151 120 9 22 chr3 34564763 34565080 -192959498 - AluSp SINE Alu 0 313 1 667 232 89 154 chr3 34565277 34565907 -192958671 - MLT1G LTR MaLR 0 555 1 314 336 63 66 chr3 34566643 34567021 -192957557 - MLT1J LTR MaLR 0 511 135 253 330 52 17 chr3 34567167 34567282 -192957296 + MIR SINE MIR 29 147 -61 234 259 0 19 chr3 34567461 34567515 -192957063 + MLT1J LTR MaLR 110 162 -349 314 315 203 10 chr3 34567668 34567865 -192956713 + MLT1L LTR MaLR 369 603 -12 223 264 0 0 chr3 34567972 34568025 -192956553 - MER5A DNA MER1_type -80 109 57 187 300 20 0 chr3 34568090 34568140 -192956438 + MIR SINE MIR 83 133 -75 441 0 0 0 chr3 34568545 34568594 -192955984 + (TG)n Simple_repeat Simple_repeat 2 50 0 1367 105 0 0 chr3 34568624 34568795 -192955783 - AluSq SINE Alu -142 171 1 3353 99 46 0 chr3 34569739 34570172 -192954406 + MLT2A2 LTR ERVL 1 453 0 252 211 0 39 chr3 34570872 34570924 -192953654 + MIR3 SINE MIR 118 167 -41 * 548 239 101 38 chr3 34570920 34571079 -192953499 + MER5B DNA MER1_type 7 175 -3 455 236 150 50 chr3 34571251 34571391 -192953187 + MLT1E LTR MaLR 97 250 -343 896 220 37 50 chr3 34571396 34571637 -192952941 + MLT1A1 LTR MaLR 1 238 -127 207 303 158 0 chr3 34571643 34571719 -192952859 + MIR3 SINE MIR 114 201 -7 587 296 13 48 chr3 34571751 34571981 -192952597 + MIR SINE MIR 23 244 -18 1062 176 0 0 chr3 34573832 34574014 -192950564 + L1MB1 LINE L1 5986 6167 -1 25 0 0 0 chr3 34574264 34574289 -192950289 + AT_rich Low_complexity Low_complexity 1 25 0 979 241 87 61 chr3 34574289 34574398 -192950180 + L1ME4a LINE L1 5335 5440 -681 2550 63 0 0 chr3 34574398 34574700 -192949878 - AluY SINE Alu -9 302 1 979 241 87 61 chr3 34574700 34575147 -192949431 + L1ME4a LINE L1 5440 5901 -220 389 274 91 25 chr3 34575738 34575935 -192948643 - MLT1H1 LTR MaLR 0 555 346 2061 248 35 30 chr3 34576035 34576600 -192947978 - MER74B LTR ERVL 0 622 55 983 221 113 75 chr3 34576934 34577283 -192947295 - LTR16A1 LTR ERVL 0 457 90 1979 199 17 6 chr3 34577283 34577644 -192946934 - MLT1A1 LTR MaLR 0 365 1 983 221 113 75 chr3 34577644 34577683 -192946895 - LTR16A1 LTR ERVL -367 90 54 211 324 15 0 chr3 34579197 34579265 -192945313 + CT-rich Low_complexity Low_complexity 4 72 0 379 165 24 82 chr3 34579733 34579818 -192944760 + MER116 DNA Mariner 1 80 0 1143 275 70 31 chr3 34581008 34581452 -192943126 - LTR16C LTR ERVL -30 461 1 1989 175 189 16 chr3 34581948 34582377 -192942201 + MLT1D LTR MaLR 1 503 -2 886 213 12 0 chr3 34582586 34582746 -192941832 + MIR SINE MIR 4 165 -97 1740 181 153 12 chr3 34582749 34583153 -192941425 + MLT1C LTR MaLR 6 466 -1 225 273 81 30 chr3 34583154 34583253 -192941325 + MIR SINE MIR 159 262 0 992 214 14 37 chr3 34583385 34583600 -192940978 - AluJo SINE Alu -102 210 1 313 324 0 0 chr3 34583746 34583817 -192940761 + Charlie1 DNA MER1_type 1 71 -2690 1684 175 55 18 chr3 34583817 34584218 -192940360 + Charlie1 DNA MER1_type 2344 2759 -2 428 214 34 0 chr3 34585938 34586027 -192938551 + L2 LINE L2 3220 3311 -2 450 65 0 0 chr3 34586709 34586771 -192937807 + (TC)n Simple_repeat Simple_repeat 2 63 0 3164 90 44 2 chr3 34587114 34587549 -192937029 + MLT2A2 LTR ERVL 1 453 0 23 0 0 0 chr3 34588249 34588272 -192936306 + AT_rich Low_complexity Low_complexity 1 23 0 575 266 72 87 chr3 34588348 34588807 -192935771 - LTR16A1 LTR ERVL -4 453 2 2315 184 14 16 chr3 34589013 34589512 -192935066 + L1MD3 LINE L1 7498 7995 0 188 146 49 0 chr3 34589703 34589744 -192934834 + GA-rich Low_complexity Low_complexity 3 45 0 379 302 77 12 chr3 34590493 34590662 -192933916 - MIR SINE MIR -1 261 82 631 294 58 22 chr3 34590905 34591265 -192933313 + L1ME4a LINE L1 5532 5904 -217 2406 104 62 3 chr3 34591274 34591630 -192932948 - MER51B LTR ERV1 0 377 1 9281 120 66 19 chr3 34591632 34591888 -192932690 - MER51B-int LTR ERV1 -1 7815 7572 2070 110 21 10 chr3 34591888 34592179 -192932399 - AluSg1 SINE Alu -15 294 1 9281 120 66 19 chr3 34592179 34593847 -192930731 - MER51B-int LTR ERV1 -244 7572 5620 347 161 108 21 chr3 34593837 34593930 -192930648 - MER51B-int LTR ERV1 -2188 5349 5249 * 2231 88 132 3 chr3 34593929 34594315 -192930263 - MER51B-int LTR ERV1 -2572 2645 2210 1771 161 55 5 chr3 34594324 34594782 -192929796 - MER51B-int LTR ERV1 -2774 3172 1474 * 8262 100 65 0 chr3 34594767 34596190 -192928388 - MER51B-int LTR ERV1 -4501 3315 1801 596 168 71 54 chr3 34596190 34596387 -192928191 - MER4A LTR ERV1 -130 534 276 243 188 0 0 chr3 34596392 34596440 -192928138 - MER4A LTR ERV1 -566 98 51 4574 116 17 19 chr3 34596456 34597757 -192926821 - MER51B-int LTR ERV1 -6321 1495 1 2447 103 56 3 chr3 34597757 34598115 -192926463 - MER51B LTR ERV1 0 377 1 321 219 106 41 chr3 34598273 34598396 -192926182 + L1ME4a LINE L1 5977 6107 -14 4122 98 8 90 chr3 34599115 34599837 -192924741 - MER4A LTR ERV1 0 664 2 467 183 11 0 chr3 34600045 34600138 -192924440 - LTR16A1 LTR ERVL -19 438 345 264 252 55 71 chr3 34600534 34600743 -192923835 + LTR36 LTR ERV1 400 556 0 444 301 9 69 chr3 34600867 34601083 -192923495 - LTR16A1 LTR ERVL -236 221 19 233 250 27 36 chr3 34601225 34601337 -192923241 - L1M4 LINE L1 -2667 3479 3369 1234 305 109 4 chr3 34601853 34602375 -192922203 + MLT2F LTR ERVL 19 595 -68 563 318 12 6 chr3 34602931 34603104 -192921474 + G-rich Low_complexity Low_complexity 2 175 0 2212 117 3 3 chr3 34603104 34603395 -192921183 - AluSq SINE Alu -22 291 1 438 261 46 15 chr3 34603782 34603912 -192920666 - MIR3 SINE MIR -7 201 68 240 169 99 14 chr3 34604796 34604867 -192919711 - MLT1H LTR MaLR -12 583 507 249 264 91 41 chr3 34604892 34605013 -192919565 - MLT1H LTR MaLR -185 364 238 2588 94 92 8 chr3 34605023 34605511 -192919067 + MER11A LTR ERVK 1 529 -737 631 269 118 41 chr3 34605627 34605758 -192918820 - MLT1H LTR MaLR -185 364 244 4751 170 24 56 chr3 34605758 34606864 -192917714 + MER11C LTR ERVK 1 1071 0 631 269 118 41 chr3 34606864 34607070 -192917508 - MLT1H LTR MaLR -305 244 1 12957 220 24 33 chr3 34607199 34612523 -192912055 - L1PA16 LINE L1 -21 6202 793 307 260 24 32 chr3 34613303 34613426 -192911152 - MLT1K LTR MaLR -160 428 307 1638 215 71 56 chr3 34614180 34614925 -192909653 + L1MC5 LINE L1 6768 7523 -438 422 273 32 39 chr3 34615089 34615243 -192909335 + L1ME3A LINE L1 5975 6127 -43 216 204 0 0 chr3 34615397 34615441 -192909137 + A-rich Low_complexity Low_complexity 1 44 0 320 359 26 13 chr3 34616026 34616260 -192908318 + MLT1H LTR MaLR 21 257 -292 510 324 33 22 chr3 34617434 34617616 -192906962 - MIR SINE MIR -17 245 62 231 281 31 0 chr3 34617785 34617849 -192906729 - L2 LINE L2 0 3272 3207 326 322 42 111 chr3 34618593 34618997 -192905581 - L2 LINE L2 0 3272 2897 292 197 61 0 chr3 34619780 34619846 -192904732 - MLT1L LTR MaLR 0 615 546 617 242 57 44 chr3 34619860 34620087 -192904491 + MLT1J2 LTR MaLR 7 236 -214 463 270 96 103 chr3 34620321 34620642 -192903936 - MLT1L LTR MaLR -166 449 130 1865 161 143 11 chr3 34620642 34621020 -192903558 - MSTA LTR MaLR 0 428 1 463 270 96 103 chr3 34621020 34621135 -192903443 - MLT1L LTR MaLR -485 130 16 580 310 25 15 chr3 34621964 34622207 -192902371 - MIR SINE MIR -17 245 4 787 226 89 5 chr3 34623116 34623306 -192901272 + MER58A DNA MER1_type 13 218 -6 22 35 0 0 chr3 34623402 34623431 -192901147 + AT_rich Low_complexity Low_complexity 1 29 0 2092 152 0 0 chr3 34623624 34623926 -192900652 + AluSx SINE Alu 1 302 -10 246 211 99 0 chr3 34624396 34624467 -192900111 - MIR SINE MIR -58 204 127 293 236 24 126 chr3 34624499 34624567 -192900011 - MER81 DNA DNA 0 114 63 2420 80 0 0 chr3 34624567 34624919 -192899659 + AluY SINE Alu 1 311 0 293 236 24 126 chr3 34624919 34624977 -192899601 - MER81 DNA DNA -51 63 1 560 211 15 38 chr3 34625727 34625860 -192898718 + L2 LINE L2 2231 2360 -954 662 210 7 0 chr3 34625881 34626024 -192898554 - MER77 LTR ERV1 0 605 462 1826 279 82 10 chr3 34626041 34626915 -192897663 + L2 LINE L2 2366 3313 0 1010 195 11 0 chr3 34626912 34627086 -192897492 + MER5A DNA MER1_type 14 189 0 * 237 347 32 32 chr3 34628600 34628724 -192895854 + MIR SINE MIR 1 124 -84 334 258 258 15 chr3 34628760 34628892 -192895686 - MER5B DNA MER1_type -14 164 1 817 163 0 0 chr3 34630606 34630741 -192893837 + AluSp/q SINE Alu 172 306 -7 2114 136 0 3 chr3 34630880 34631182 -192893396 - AluSx SINE Alu -10 302 2 303 319 85 14 chr3 34631742 34631883 -192892695 - MIR SINE MIR -93 169 19 1714 188 39 15 chr3 34634114 34634449 -192890129 - MER61A LTR ERV1 0 343 1 331 230 27 0 chr3 34634620 34634694 -192889884 + MIR3 SINE MIR 93 168 -40 231 333 39 10 chr3 34635158 34635260 -192889318 + MER102a DNA MER1_type 1 105 -225 250 265 41 0 chr3 34635330 34635428 -192889150 + MER102a DNA MER1_type 229 330 0 254 244 22 56 chr3 34637051 34637141 -192887437 - MIR SINE MIR -12 250 164 319 246 104 45 chr3 34637618 34637752 -192886826 - MIR SINE MIR -11 251 110 311 276 86 9 chr3 34637959 34638064 -192886514 - L2 LINE L2 -8 3305 3193 807 168 43 48 chr3 34638590 34638799 -192885779 + MER33 DNA MER1_type 25 232 -92 343 262 75 9 chr3 34639591 34639698 -192884880 + MIR SINE MIR 84 197 -65 747 172 86 0 chr3 34639872 34640058 -192884520 - L1MD3 LINE L1 -22 7973 7772 * 1024 224 59 30 chr3 34640055 34640461 -192884117 - L1MC4a LINE L1 -577 7231 6814 295 305 141 14 chr3 34640710 34640968 -192883610 - L1MCb LINE L1 -5756 666 264 235 315 124 0 chr3 34641441 34641530 -192883048 - L2 LINE L2 -22 3250 3151 646 294 158 41 chr3 34641655 34642074 -192882504 - LTR16C LTR ERVL -23 468 1 210 302 115 0 chr3 34642078 34642174 -192882404 - L2 LINE L2 -242 3030 2924 3786 282 119 22 chr3 34642396 34643937 -192880641 - L2 LINE L2 -716 2598 909 209 291 104 8 chr3 34644927 34645061 -192879517 - MIR SINE MIR -110 152 6 636 228 114 7 chr3 34645766 34645915 -192878663 - MER5A DNA MER1_type -6 183 19 1221 218 127 6 chr3 34646289 34646628 -192877950 - L1ME1 LINE L1 -5 6161 5782 22 70 0 0 chr3 34646833 34646876 -192877702 + AT_rich Low_complexity Low_complexity 1 43 0 31 26 0 0 chr3 34646899 34646937 -192877641 + AT_rich Low_complexity Low_complexity 1 38 0 6531 7 1 0 chr3 34647676 34648441 -192876137 + L1HS LINE L1 5390 6155 0 195 114 0 0 chr3 34648442 34648477 -192876101 + (A)n Simple_repeat Simple_repeat 1 35 0 2417 199 14 3 chr3 34648588 34649241 -192875337 + L1HS LINE L1 5496 6155 0 366 74 0 0 chr3 34649248 34649302 -192875276 + (A)n Simple_repeat Simple_repeat 1 54 0 264 274 12 0 chr3 34649493 34649577 -192875001 + L1ME LINE L1 5726 5810 -354 1028 207 22 14 chr3 34649600 34649822 -192874756 - MER58A DNA MER1_type 0 224 1 538 252 161 0 chr3 34651930 34652085 -192872493 + MER5A DNA MER1_type 9 188 -1 320 200 139 73 chr3 34653664 34653829 -192870749 + MLT1K LTR MaLR 394 569 -19 243 232 0 18 chr3 34654159 34654215 -192870363 - MIR SINE MIR -133 129 75 2406 77 17 0 chr3 34654498 34654797 -192869781 + AluSq SINE Alu 3 306 -7 273 251 146 96 chr3 34655012 34655231 -192869347 + MIR SINE MIR 20 249 -13 488 89 13 0 chr3 34656013 34656092 -192868486 + (TG)n Simple_repeat Simple_repeat 2 81 0 230 326 82 5 chr3 34657153 34657337 -192867241 - LTR16C LTR ERVL -67 424 227 2339 104 0 0 chr3 34657448 34657755 -192866823 + AluSx SINE Alu 1 307 -5 360 338 19 25 chr3 34657899 34658059 -192866519 - MIR SINE MIR -86 176 18 1661 250 128 13 chr3 34659263 34659795 -192864783 + MLT1E LTR MaLR 1 593 0 650 303 86 52 chr3 34659891 34660215 -192864363 + MLT1H LTR MaLR 215 549 0 2375 106 0 0 chr3 34664512 34664815 -192859763 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr3 34666138 34666160 -192858418 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 34667127 34667155 -192857423 + AT_rich Low_complexity Low_complexity 1 28 0 348 230 42 48 chr3 34668016 34668181 -192856397 + MER103 DNA DNA 3 166 0 2235 110 10 16 chr3 34668567 34668877 -192855701 + AluSx SINE Alu 1 308 -4 871 320 15 7 chr3 34670422 34670694 -192853884 + LTR16C LTR ERVL 88 361 -130 22 35 0 0 chr3 34671225 34671254 -192853324 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr3 34672058 34672092 -192852486 + (TTA)n Simple_repeat Simple_repeat 3 36 0 630 197 8 16 chr3 34672093 34672215 -192852363 - FLAM_C SINE Alu -22 121 1 30 0 0 0 chr3 34672217 34672247 -192852331 + AT_rich Low_complexity Low_complexity 1 30 0 4290 111 18 0 chr3 34672360 34673102 -192851476 - L1P4 LINE L1 -735 5433 4680 798 226 119 18 chr3 34673906 34674132 -192850446 - MIR SINE MIR -12 250 2 2226 107 3 22 chr3 34675123 34675441 -192849137 - AluSx SINE Alu 0 312 1 21 57 0 0 chr3 34675684 34675719 -192848859 + AT_rich Low_complexity Low_complexity 1 35 0 1486 243 57 33 chr3 34675851 34676179 -192848399 + L1ME3 LINE L1 5602 5950 -212 2315 118 11 32 chr3 34676179 34676551 -192848027 + THE1B LTR MaLR 1 364 0 1486 243 57 33 chr3 34676551 34676762 -192847816 + L1ME3 LINE L1 5950 6154 -8 21 57 0 0 chr3 34676762 34676797 -192847781 + AT_rich Low_complexity Low_complexity 1 35 0 1501 106 53 39 chr3 34676932 34677216 -192847362 + THE1C LTR MaLR 88 375 0 194 405 67 0 chr3 34678122 34678211 -192846367 - L2 LINE L2 -231 3041 2947 464 275 121 62 chr3 34678518 34678962 -192845616 - L2 LINE L2 -191 3081 2612 515 295 161 5 chr3 34679212 34679429 -192845149 - MIR SINE MIR 0 262 12 250 310 0 0 chr3 34681156 34681227 -192843351 + MER5A DNA MER1_type 12 82 -107 451 225 163 31 chr3 34681355 34681515 -192843063 + MER5A DNA MER1_type 9 189 0 272 229 12 36 chr3 34681527 34681610 -192842968 - MER5B DNA MER1_type 0 178 98 344 256 30 11 chr3 34681612 34681750 -192842828 - MER91A DNA MER1_type -4 192 1 207 0 0 0 chr3 34681816 34681839 -192842739 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 592 203 51 83 chr3 34681850 34682140 -192842438 - L1MC5 LINE L1 -34 7927 7648 1956 154 11 45 chr3 34682140 34682497 -192842081 - MER7A DNA MER2_type -2 344 2 592 203 51 83 chr3 34682497 34682556 -192842022 - L1MC5 LINE L1 -313 7648 7589 1911 219 55 78 chr3 34682697 34682859 -192841719 - L1MC5 LINE L1 -465 7496 7332 939 243 23 0 chr3 34682859 34683077 -192841501 - MER58A DNA MER1_type 0 224 2 1911 219 55 78 chr3 34683077 34683844 -192840734 - L1MC5 LINE L1 -629 7332 6558 336 326 96 41 chr3 34684488 34684706 -192839872 - L2 LINE L2 -5 3267 3038 249 313 70 43 chr3 34686235 34686350 -192838228 - MIR3 SINE MIR -6 202 85 367 248 166 73 chr3 34687788 34688090 -192836488 + MLT1I LTR MaLR 70 399 -10 2226 108 3 0 chr3 34688308 34688603 -192835975 + AluSp SINE Alu 1 296 -17 273 309 122 16 chr3 34689721 34689844 -192834734 - MIR SINE MIR -32 230 95 735 144 8 23 chr3 34689953 34690085 -192834493 + FLAM_C SINE Alu 2 131 -2 278 267 22 33 chr3 34690117 34690207 -192834371 - MIR SINE MIR -96 166 78 2509 71 0 0 chr3 34690919 34691227 -192833351 - AluY SINE Alu -3 308 1 736 241 148 67 chr3 34692737 34693459 -192831119 + LTR41 LTR ERVL 1 795 0 2487 309 69 48 chr3 34694094 34695523 -192829055 + ERVL LTR ERVL 765 2223 -3541 445 267 0 9 chr3 34695527 34695632 -192828946 + L2 LINE L2 3210 3313 0 203 143 0 24 chr3 34697232 34697274 -192827304 + (TTTCC)n Simple_repeat Simple_repeat 4 44 0 26 30 0 0 chr3 34698450 34698483 -192826095 + AT_rich Low_complexity Low_complexity 1 33 0 258 202 140 61 chr3 34698670 34698784 -192825794 - MER112 DNA MER1_type -6 254 132 225 246 0 0 chr3 34698887 34698952 -192825626 + CT-rich Low_complexity Low_complexity 2 66 0 581 311 30 33 chr3 34698952 34699286 -192825292 - L1MC4a LINE L1 -1870 5938 5606 256 276 102 10 chr3 34699308 34699406 -192825172 - L1MC4a LINE L1 -2247 5561 5455 1766 136 0 0 chr3 34699553 34699803 -192824775 - AluJb SINE Alu -28 284 35 231 67 0 0 chr3 34700550 34700580 -192823998 - MIR SINE MIR -114 148 119 988 208 0 5 chr3 34700580 34700787 -192823791 + MLT1A1 LTR MaLR 1 206 -159 192 389 11 11 chr3 34701702 34701792 -192822786 - L2 LINE L2 -369 2903 2814 235 256 66 5 chr3 34701891 34701962 -192822616 + MIR SINE MIR 80 143 -65 506 260 34 38 chr3 34702549 34702784 -192821794 + LTR37B LTR ERV1 176 409 -59 58 15 0 0 chr3 34703887 34703952 -192820626 + AT_rich Low_complexity Low_complexity 1 65 0 9461 148 24 10 chr3 34704123 34705685 -192818893 + Tigger1 DNA MER2_type 1 1584 -834 347 279 9 0 chr3 34705687 34705798 -192818780 + L1PB1 LINE L1 79 190 -6673 * 13944 198 35 22 chr3 34705778 34707855 -192816723 + L1PB1 LINE L1 872 2921 -3946 2518 66 3 0 chr3 34707855 34708156 -192816422 + AluY SINE Alu 1 302 -9 13944 198 35 22 chr3 34708156 34710037 -192814541 + L1PB1 LINE L1 2921 4776 -2091 2263 92 0 0 chr3 34710037 34710379 -192814199 + AluSc SINE Alu 1 342 0 13944 198 35 22 chr3 34710379 34711807 -192812771 + L1PB1 LINE L1 4776 6512 -355 450 0 0 0 chr3 34711807 34711857 -192812721 + (TA)n Simple_repeat Simple_repeat 2 51 0 13944 198 35 22 chr3 34711857 34712163 -192812415 + L1PB1 LINE L1 6512 6813 -54 25 0 0 0 chr3 34712186 34712211 -192812367 + AT_rich Low_complexity Low_complexity 1 25 0 4969 141 19 2 chr3 34712218 34713020 -192811558 + Tigger1 DNA MER2_type 1603 2417 -1 1084 241 74 27 chr3 34713990 34714393 -192810185 - MER113 DNA MER1_type? -96 425 4 23 0 0 0 chr3 34714986 34715009 -192809569 + AT_rich Low_complexity Low_complexity 1 23 0 2114 125 0 0 chr3 34715501 34715797 -192808781 + AluSx SINE Alu 1 296 -16 1783 112 0 0 chr3 34716651 34716907 -192807671 + AluSx SINE Alu 52 307 0 2373 74 3 3 chr3 34718231 34718529 -192806049 - AluY SINE Alu -13 298 1 188 170 21 21 chr3 34719059 34719106 -192805472 + MER5C DNA MER1_type 273 319 -5 603 209 162 11 chr3 34719264 34719542 -192805036 - MER33 DNA MER1_type -1 323 4 417 297 54 0 chr3 34719952 34720063 -192804515 - L2 LINE L2 0 3313 3197 264 30 0 0 chr3 34721253 34721286 -192803292 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2107 116 3 0 chr3 34721555 34721848 -192802730 + AluSq SINE Alu 1 294 -19 863 95 16 166 chr3 34722763 34722863 -192801715 - L1M2 LINE L1 -642 5658 5606 2057 123 10 3 chr3 34722863 34723164 -192801414 - AluSc SINE Alu -6 303 1 863 95 16 166 chr3 34723164 34723282 -192801296 - L1M2 LINE L1 -694 5606 5472 327 238 129 20 chr3 34723558 34723659 -192800919 + MIR SINE MIR 7 119 -89 9047 54 3 1 chr3 34723872 34725029 -192799549 - L1P LINE L1 -1097 5049 3891 842 180 0 34 chr3 34725133 34725311 -192799267 + L1M4 LINE L1 3524 3695 -2451 206 31 0 31 chr3 34725311 34725343 -192799235 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 1340 160 18 5 chr3 34725359 34725606 -192798972 + AluJb SINE Alu 64 313 0 3792 160 14 32 chr3 34725606 34726325 -192798253 + L1M4 LINE L1 3741 4446 -1700 1929 125 57 16 chr3 34726352 34726719 -192797859 + L1MA2 LINE L1 5923 6304 0 992 122 19 6 chr3 34726744 34726900 -192797678 + L1PA15 LINE L1 5987 6144 -21 585 258 0 0 chr3 34727754 34727874 -192796704 - FLAM_A SINE Alu -13 120 1 2196 136 0 0 chr3 34728606 34728915 -192795663 + AluSx SINE Alu 1 309 -3 1993 144 3 3 chr3 34728920 34729212 -192795366 + AluSx SINE Alu 1 292 -20 329 115 0 33 chr3 34729215 34729276 -192795302 + (GGGAA)n Simple_repeat Simple_repeat 4 62 0 1193 275 126 29 chr3 34729571 34729926 -192794652 + L2 LINE L2 2588 2907 -406 2161 144 40 80 chr3 34729926 34730378 -192794200 - Tigger2a DNA MER2_type 0 434 1 1193 275 126 29 chr3 34730378 34730659 -192793919 + L2 LINE L2 2907 3312 -1 1094 187 49 169 chr3 34730738 34730882 -192793696 + L1M4 LINE L1 4615 4775 -1371 1231 104 38 104 chr3 34730882 34731170 -192793408 + L1MA8 LINE L1 6017 6285 -6 1094 187 49 169 chr3 34731170 34731274 -192793304 + L1M4 LINE L1 4775 4890 -1256 4105 154 32 3 chr3 34731274 34732027 -192792551 + L1MA4 LINE L1 5514 6288 -12 1094 187 49 169 chr3 34732027 34732488 -192792090 + L1M4 LINE L1 4890 5240 -906 1947 126 25 0 chr3 34734482 34734759 -192789819 + AluSx SINE Alu 1 284 -28 205 196 39 0 chr3 34734945 34734996 -192789582 + CT-rich Low_complexity Low_complexity 3 55 0 6408 127 27 18 chr3 34735190 34735316 -192789262 - L1 LINE L1 -3490 4075 3952 1825 159 47 16 chr3 34735316 34735680 -192788898 + THE1C LTR MaLR 1 375 0 6408 127 27 18 chr3 34735680 34736537 -192788041 - L1 LINE L1 -3613 3952 3074 2407 78 0 0 chr3 34736537 34736831 -192787747 - AluY SINE Alu -17 294 1 6408 127 27 18 chr3 34736831 34737281 -192787297 - L1 LINE L1 -4491 3074 2630 959 235 59 29 chr3 34737350 34737588 -192786990 - MIR SINE MIR 0 262 18 2878 125 0 2 chr3 34737646 34738055 -192786523 + MSTA LTR MaLR 21 428 0 23 68 0 0 chr3 34738345 34738389 -192786189 + AT_rich Low_complexity Low_complexity 1 44 0 766 270 126 18 chr3 34738402 34738728 -192785850 - L2 LINE L2 -1 3312 2952 322 278 87 9 chr3 34739038 34739153 -192785425 - L2 LINE L2 -261 3011 2888 1688 139 27 4 chr3 34739288 34739546 -192785032 + AluSx SINE Alu 19 282 -30 777 271 50 25 chr3 34740090 34740367 -192784211 + MLT1J LTR MaLR 107 390 -121 363 214 43 3 chr3 34740385 34740486 -192784092 - MIR SINE MIR -89 119 7 1632 109 9 102 chr3 34740776 34740878 -192783700 + L1MA4 LINE L1 5488 5598 -702 2350 86 10 3 chr3 34740878 34741181 -192783397 + AluSc SINE Alu 1 305 -4 1632 109 9 102 chr3 34741181 34741400 -192783178 + L1MA4 LINE L1 5598 5779 -521 834 128 5 64 chr3 34741404 34741591 -192782987 + L1MA4 LINE L1 6119 6294 -6 29 60 0 0 chr3 34741591 34741641 -192782937 + AT_rich Low_complexity Low_complexity 1 50 0 472 230 43 22 chr3 34741686 34741825 -192782753 - MER58B DNA MER1_type -10 331 190 21 82 0 0 chr3 34742789 34742838 -192781740 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 34744347 34744368 -192780210 + AT_rich Low_complexity Low_complexity 1 21 0 2280 85 0 10 chr3 34746083 34746378 -192778200 + AluY SINE Alu 1 292 -19 265 250 0 18 chr3 34746579 34746635 -192777943 + L2 LINE L2 3204 3258 -14 253 193 0 35 chr3 34746586 34746643 -192777935 + MIR SINE MIR 206 260 -2 * 273 184 0 16 chr3 34747620 34747691 -192776887 - MLT1H LTR MaLR 0 595 480 448 230 85 71 chr3 34747748 34748031 -192776547 - MLT1H LTR MaLR -188 361 75 263 302 19 0 chr3 34748206 34748312 -192776266 - LTR41 LTR ERVL -6 767 660 416 240 107 7 chr3 34748804 34748954 -192775624 - LTR41 LTR ERVL -608 165 1 345 24 0 0 chr3 34749470 34749512 -192775066 + (CA)n Simple_repeat Simple_repeat 2 43 0 218 182 0 65 chr3 34750047 34750124 -192774454 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 680 202 42 60 chr3 34750788 34750956 -192773622 + MIR SINE MIR 23 187 -75 246 32 0 0 chr3 34750965 34750996 -192773582 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 1400 268 89 4 chr3 34751592 34752043 -192772535 - LTR16C LTR ERVL -2 489 1 2269 114 0 7 chr3 34752389 34752688 -192771890 + AluSx SINE Alu 1 297 -15 286 346 62 0 chr3 34753523 34753653 -192770925 - L3b LINE CR1 -263 1320 1183 1501 131 49 30 chr3 34754227 34754547 -192770031 + MER51A LTR ERV1 149 551 -83 420 20 0 0 chr3 34754547 34754596 -192769982 + (CA)n Simple_repeat Simple_repeat 1 49 0 2432 245 61 21 chr3 34755401 34756273 -192768305 + L1ME2 LINE L1 5258 6164 0 550 281 4 71 chr3 34757113 34757380 -192767198 + MLT2C1 LTR ERVL 128 376 -21 223 340 219 21 chr3 34757626 34757905 -192766673 - L2 LINE L2 -767 2547 2214 556 248 25 8 chr3 34758337 34758458 -192766120 + L2 LINE L2 3189 3311 -2 726 84 0 0 chr3 34759391 34759486 -192765092 + AluY SINE Alu 209 303 -8 345 335 35 12 chr3 34759650 34759821 -192764757 + MIR SINE MIR 23 196 -66 224 179 75 30 chr3 34761828 34761895 -192762683 - MIR SINE MIR -65 197 128 616 196 20 13 chr3 34762003 34762156 -192762422 + L1MC5 LINE L1 7717 7870 -91 330 250 130 0 chr3 34763868 34763976 -192760602 + MIR SINE MIR 128 249 -13 470 327 146 11 chr3 34764017 34764366 -192760212 + L2 LINE L2 2489 2884 -430 225 0 0 0 chr3 34764454 34764479 -192760099 + (T)n Simple_repeat Simple_repeat 1 25 0 309 312 104 8 chr3 34764680 34764805 -192759773 + L2 LINE L2 3136 3272 0 2230 58 41 7 chr3 34764975 34765267 -192759311 - AluY SINE Alu -9 302 1 253 385 120 5 chr3 34766472 34766664 -192757914 + L2 LINE L2 2899 3112 -160 336 317 10 0 chr3 34766733 34766834 -192757744 - MIR SINE MIR 0 262 161 1651 223 61 23 chr3 34766854 34767294 -192757284 + LTR2B LTR ERV1 34 490 0 255 319 217 29 chr3 34767294 34767432 -192757146 - MIR SINE MIR -98 164 1 553 328 20 44 chr3 34767842 34768012 -192756566 - MIR SINE MIR -1 261 97 2238 117 0 22 chr3 34768012 34768328 -192756250 - AluSq SINE Alu -4 309 1 553 328 20 44 chr3 34768328 34768407 -192756171 - MIR SINE MIR -165 97 18 1416 173 81 16 chr3 34768430 34768650 -192755928 - L1P LINE L1 -1803 4343 4096 894 45 0 0 chr3 34768650 34768761 -192755817 - L1PA4 LINE L1 0 6155 6045 1416 173 81 16 chr3 34768761 34768847 -192755731 - L1P LINE L1 -2050 4096 4017 6093 99 11 3 chr3 34768847 34769643 -192754935 + L1PA13 LINE L1 4351 5139 -1024 2255 99 3 10 chr3 34769643 34769956 -192754622 + AluY SINE Alu 1 311 0 6093 99 11 3 chr3 34769956 34770977 -192753601 + L1PA13 LINE L1 5139 6159 -4 846 261 133 38 chr3 34771374 34771826 -192752752 - L2 LINE L2 0 3313 2819 1913 123 29 0 chr3 34772730 34773033 -192751545 + AluSx SINE Alu 1 311 0 24 32 0 0 chr3 34773049 34773080 -192751498 + AT_rich Low_complexity Low_complexity 1 31 0 1512 115 4 47 chr3 34774264 34774517 -192750061 - L1PB2 LINE L1 -7 6144 5903 4311 72 40 9 chr3 34774517 34775606 -192748972 + MER11A LTR ERVK 5 1266 0 7096 174 78 20 chr3 34775606 34775777 -192748801 - L1PA10 LINE L1 -256 5969 5809 10465 150 8 2 chr3 34775777 34778394 -192746184 - L1PA12 LINE L1 -1 6167 3554 7096 174 78 20 chr3 34778394 34783436 -192741142 - L1PA10 LINE L1 -416 5809 230 718 303 122 3 chr3 34784645 34784949 -192739629 + L2 LINE L2 1367 1706 -1608 228 205 0 0 chr3 34784961 34785000 -192739578 + L2 LINE L2 3222 3260 -12 264 59 0 0 chr3 34785001 34785035 -192739543 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 225 159 0 0 chr3 34785679 34785723 -192738855 + CT-rich Low_complexity Low_complexity 2 45 0 2251 75 0 46 chr3 34785733 34786039 -192738539 + AluY SINE Alu 1 292 -19 493 328 12 41 chr3 34786091 34786335 -192738243 + LTR67 LTR ERVL 2 238 -319 226 327 20 0 chr3 34786439 34786540 -192738038 + LTR67 LTR ERVL 405 507 -50 3531 74 0 0 chr3 34786667 34787111 -192737467 + MLT2A1 LTR ERVL 1 444 0 297 270 132 26 chr3 34787160 34787312 -192737266 - MIR SINE MIR 0 262 95 1006 184 77 4 chr3 34787910 34788143 -192736435 - MLT1C LTR MaLR -215 252 3 278 294 185 60 chr3 34788157 34788525 -192736053 - L2 LINE L2 -911 2403 1990 253 252 50 22 chr3 34789371 34789510 -192735068 - L1ME4a LINE L1 -2 6119 5977 2075 113 7 0 chr3 34789609 34789916 -192734662 - AluSx SINE Alu 0 309 1 1057 231 56 36 chr3 34790122 34790425 -192734153 - MER76 LTR ERV -379 309 1 1139 187 51 12 chr3 34790425 34791395 -192733183 - L1ME4a LINE L1 -565 5619 4566 1409 206 129 45 chr3 34791400 34791866 -192732712 + MLT1D LTR MaLR 1 505 0 1793 223 19 10 chr3 34791866 34792350 -192732228 - L1ME4a LINE L1 -1590 4556 4069 2766 197 27 24 chr3 34792357 34793027 -192731551 - MER67C LTR ERV1 0 710 39 783 246 33 33 chr3 34793062 34793367 -192731211 - L1ME4a LINE L1 -2056 4090 3786 1994 153 26 0 chr3 34793547 34793893 -192730685 + MER44D DNA MER2_type 196 605 0 621 213 25 6 chr3 34793893 34794053 -192730525 - L1ME4a LINE L1 -2362 3784 3622 2059 133 141 3 chr3 34794053 34794429 -192730149 + MSTA LTR MaLR 1 428 0 887 110 123 7 chr3 34794430 34794584 -192729994 - MER4E LTR ERV1 -594 172 1 614 293 148 27 chr3 34794821 34795118 -192729460 - MLT1G1 LTR MaLR -33 562 230 248 197 15 45 chr3 34795137 34795203 -192729375 - MLT1J2 LTR MaLR -288 162 99 2284 132 91 5 chr3 34795640 34796034 -192728544 + MSTA LTR MaLR 1 428 0 4656 158 50 8 chr3 34797303 34798170 -192726408 - MER4D LTR ERV1 0 903 1 2095 93 25 3 chr3 34798413 34798736 -192725842 - MER51B LTR ERV1 0 377 48 762 156 0 7 chr3 34798873 34799008 -192725570 - MER4D LTR ERV1 -769 134 1 2525 72 20 80 chr3 34799252 34799652 -192724926 - MER51B LTR ERV1 0 377 2 204 40 0 0 chr3 34800687 34800712 -192723866 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 414 181 86 29 chr3 34800714 34800819 -192723759 + L2 LINE L2 3170 3280 -33 1619 160 82 130 chr3 34801779 34802074 -192722504 - LTR49 LTR ERV1 0 595 344 2048 166 68 36 chr3 34802074 34802489 -192722089 + MSTC LTR MaLR 1 428 0 1619 160 82 130 chr3 34802489 34802818 -192721760 - LTR49 LTR ERV1 -251 344 1 418 214 67 22 chr3 34803323 34803501 -192721077 - MER53 DNA DNA 0 189 4 329 280 80 84 chr3 34803801 34804040 -192720538 + L2 LINE L2 2292 2529 -785 254 214 12 0 chr3 34804500 34804584 -192719994 + (CA)n Simple_repeat Simple_repeat 2 86 0 197 218 10 183 chr3 34806102 34806299 -192718279 + L2 LINE L2 3054 3216 -97 862 163 0 7 chr3 34806403 34806556 -192718022 + MLT1A1 LTR MaLR 1 152 -213 6809 30 0 1 chr3 34806570 34807432 -192717146 - L1P LINE L1 -844 5302 4442 1310 260 2 4 chr3 34807561 34808022 -192716556 + L1PA2 LINE L1 5696 6155 0 195 42 0 0 chr3 34808035 34808059 -192716519 + (A)n Simple_repeat Simple_repeat 1 24 0 27 29 0 0 chr3 34808849 34808883 -192715695 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr3 34809432 34809459 -192715119 + AT_rich Low_complexity Low_complexity 1 27 0 1111 121 131 15 chr3 34810525 34810731 -192713847 - MER30 DNA MER1_type 0 230 1 657 203 14 0 chr3 34810773 34810916 -192713662 + LTR16C LTR ERVL 345 489 -2 315 0 0 0 chr3 34811344 34811379 -192713199 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 256 188 30 chr3 34812226 34812359 -192712219 - L2 LINE L2 0 3313 3160 2429 100 0 0 chr3 34813329 34813639 -192710939 - AluSg SINE Alu 0 310 1 227 354 26 0 chr3 34813969 34814081 -192710497 - MIR SINE MIR 0 262 148 479 260 6 89 chr3 34814081 34814207 -192710371 + MIR SINE MIR 3 113 -149 2392 73 0 25 chr3 34814207 34814521 -192710057 - AluY SINE Alu -5 306 1 479 260 6 89 chr3 34814521 34814563 -192710015 + MIR SINE MIR 113 157 -105 24 0 0 0 chr3 34814601 34814625 -192709953 + AT_rich Low_complexity Low_complexity 1 24 0 25208 39 0 1 chr3 34814652 34818538 -192706040 - L1PA4 LINE L1 -7 6148 2263 13750 64 16 0 chr3 34818538 34820379 -192704199 - L1PA4 LINE L1 -4276 1870 1 366 270 20 74 chr3 34820423 34820571 -192704007 - MIR SINE MIR -95 167 28 1152 241 26 0 chr3 34820588 34820932 -192703646 + L1M4 LINE L1 3502 3854 -2292 379 171 0 0 chr3 34820946 34821016 -192703562 + L1PA16 LINE L1 6079 6148 -18 1855 145 0 7 chr3 34821036 34821319 -192703259 + AluSq SINE Alu 1 281 -32 423 0 0 0 chr3 34821319 34821366 -192703212 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 850 235 67 24 chr3 34821371 34821669 -192702909 + L1M4 LINE L1 3836 4146 -2000 * 1160 225 50 59 chr3 34821665 34822006 -192702572 - L1ME LINE L1 -470 5696 5354 600 164 29 0 chr3 34822006 34822110 -192702468 - U6 snRNA snRNA 0 107 1 1160 225 50 59 chr3 34822110 34822229 -192702349 - L1ME LINE L1 -812 5354 5235 2513 56 7 3 chr3 34822229 34822531 -192702047 - AluY SINE Alu -8 303 1 1160 225 50 59 chr3 34822531 34822859 -192701719 - L1ME LINE L1 -931 5235 4901 480 273 68 0 chr3 34822868 34823029 -192701549 + L2 LINE L2 2258 2429 -885 709 197 64 32 chr3 34823053 34823271 -192701307 + LTR41 LTR ERVL 1 225 -548 289 246 29 0 chr3 34823631 34823700 -192700878 + LTR41 LTR ERVL 514 584 -189 432 129 24 35 chr3 34823770 34823855 -192700723 + Tigger1 DNA MER2_type 4 87 -2331 10351 129 21 10 chr3 34823969 34825686 -192698892 + Tigger1 DNA MER2_type 682 2418 0 392 188 13 84 chr3 34825686 34825836 -192698742 + LTR41 LTR ERVL 635 773 0 227 132 66 118 chr3 34825853 34825929 -192698649 + L2 LINE L2 2500 2571 -743 1800 236 17 61 chr3 34825931 34826523 -192698055 + MLT1F1 LTR MaLR 2 567 0 391 261 37 118 chr3 34826523 34826795 -192697783 + L2 LINE L2 2568 2817 -497 212 253 91 91 chr3 34826799 34827064 -192697514 + L2 LINE L2 3036 3300 -13 695 62 10 0 chr3 34827065 34827162 -192697416 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 263 399 54 0 chr3 34828614 34828762 -192695816 - L2 LINE L2 0 3272 3117 311 291 73 55 chr3 34828949 34829114 -192695464 - L2 LINE L2 -222 3050 2883 244 282 94 17 chr3 34829319 34829436 -192695142 + MIR SINE MIR 15 140 -122 231 218 0 0 chr3 34830574 34830629 -192693949 + (CA)n Simple_repeat Simple_repeat 1 55 0 222 214 0 0 chr3 34832072 34832114 -192692464 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 308 304 197 6 chr3 34832252 34832565 -192692013 - L2 LINE L2 -176 3096 2709 192 337 0 76 chr3 34832633 34832805 -192691773 + L2 LINE L2 2470 2628 -686 617 291 114 0 chr3 34833092 34833329 -192691249 + MLT1L LTR MaLR 352 615 0 252 303 43 25 chr3 34833455 34833617 -192690961 + L2 LINE L2 2829 2993 -279 491 193 0 46 chr3 34833735 34833844 -192690734 + MLT1I LTR MaLR 106 209 -200 605 217 101 48 chr3 34833932 34834121 -192690457 - MER58C DNA MER1_type -8 207 9 215 269 179 0 chr3 34834335 34834413 -192690165 + L2 LINE L2 3140 3231 -41 1204 54 7 0 chr3 34835837 34835984 -192688594 + AluSc SINE Alu 1 148 -161 198 0 0 0 chr3 34836047 34836069 -192688509 + (A)n Simple_repeat Simple_repeat 1 22 0 1082 102 7 0 chr3 34836777 34836924 -192687654 + AluSc SINE Alu 1 148 -161 216 0 0 0 chr3 34836985 34837009 -192687569 + (A)n Simple_repeat Simple_repeat 1 24 0 332 287 35 81 chr3 34837042 34837216 -192687362 + HAL1 LINE L1 103 268 -2239 419 301 111 18 chr3 34837395 34837727 -192686851 + HAL1 LINE L1 550 912 -1595 365 164 14 0 chr3 34837766 34837839 -192686739 + (TG)n Simple_repeat Simple_repeat 1 74 0 1436 272 134 34 chr3 34837919 34839071 -192685507 + HAL1 LINE L1 1013 2279 -228 408 176 39 17 chr3 34839409 34839649 -192684929 + (TA)n Simple_repeat Simple_repeat 1 245 0 25 0 0 0 chr3 34839718 34839743 -192684835 + AT_rich Low_complexity Low_complexity 1 25 0 380 194 10 19 chr3 34840326 34840429 -192684149 + Charlie7 DNA MER1_type 2511 2612 0 1065 172 0 20 chr3 34840930 34840993 -192683585 - MER3 DNA MER1_type -3 206 143 2018 132 3 3 chr3 34840993 34841288 -192683290 + AluSx SINE Alu 1 295 -17 1065 172 0 20 chr3 34841288 34841428 -192683150 - MER3 DNA MER1_type -66 143 7 195 125 0 0 chr3 34842409 34842449 -192682129 + (A)n Simple_repeat Simple_repeat 1 40 0 432 299 0 0 chr3 34842708 34842845 -192681733 - L1MC4a LINE L1 -1965 5843 5707 2413 81 0 3 chr3 34842966 34843275 -192681303 - AluY SINE Alu -3 308 1 1985 122 3 26 chr3 34843275 34843579 -192680999 - AluSx SINE Alu -15 297 1 189 0 0 0 chr3 34844026 34844047 -192680531 + (A)n Simple_repeat Simple_repeat 1 21 0 242 114 0 0 chr3 34846332 34846367 -192678211 + U2 snRNA snRNA 2 36 -152 1543 97 0 0 chr3 34846485 34846680 -192677898 - AluSx SINE Alu -117 195 1 556 118 88 0 chr3 34847022 34847124 -192677454 - L1MB1 LINE L1 -5 6163 6053 2441 73 0 3 chr3 34847290 34847590 -192676988 + AluY SINE Alu 1 299 -12 229 331 57 24 chr3 34847749 34847873 -192676705 - MIR SINE MIR -65 197 70 261 373 75 63 chr3 34848309 34848577 -192676001 - L2 LINE L2 0 3272 3002 344 306 124 61 chr3 34848604 34849048 -192675530 - L2 LINE L2 -378 2936 2465 296 127 0 18 chr3 34849117 34849172 -192675406 - MADE1 DNA Mariner 0 80 27 242 114 0 0 chr3 34849366 34849401 -192675177 - U2 snRNA snRNA -152 36 2 230 287 30 42 chr3 34851546 34851713 -192672865 + L2 LINE L2 2813 2977 -295 310 218 82 0 chr3 34851822 34851932 -192672646 - L1ME4a LINE L1 -6 6115 5997 440 300 41 70 chr3 34852711 34852954 -192671624 - MIR SINE MIR -13 249 14 346 284 0 0 chr3 34853127 34853229 -192671349 + (TA)n Simple_repeat Simple_repeat 1 102 0 371 260 40 10 chr3 34854005 34854105 -192670473 + L2 LINE L2 3168 3270 -2 353 255 159 13 chr3 34854115 34854272 -192670306 - MIR SINE MIR -51 211 32 526 289 33 38 chr3 34854422 34854608 -192669970 - MIR SINE MIR -42 220 28 2447 123 5 19 chr3 34854649 34855016 -192669562 + THE1B LTR MaLR 1 362 -2 11610 102 4 2 chr3 34855018 34856596 -192667982 + THE1B-int LTR MaLR 1 1580 0 2259 100 5 95 chr3 34856596 34856995 -192667583 + THE1B LTR MaLR 1 363 -1 426 216 21 89 chr3 34857013 34857203 -192667375 - L1ME3 LINE L1 -29 6133 5957 314 325 175 0 chr3 34857527 34857687 -192666891 - MER91A DNA MER1_type -8 188 1 308 262 244 0 chr3 34858362 34858591 -192665987 - L1ME3 LINE L1 -1000 5146 4862 393 311 57 45 chr3 34858676 34858853 -192665725 - HAL1b LINE L1 -1100 248 70 202 356 0 0 chr3 34860976 34861035 -192663543 - L2 LINE L2 -23 3249 3191 730 276 0 28 chr3 34861605 34861819 -192662759 - MER58A DNA MER1_type -16 208 1 1246 117 0 11 chr3 34861877 34862057 -192662521 + AluSg/x SINE Alu 133 310 -2 207 0 0 0 chr3 34862125 34862148 -192662430 + (TAA)n Simple_repeat Simple_repeat 2 24 0 282 325 123 31 chr3 34862355 34862712 -192661866 + L2 LINE L2 2140 2529 -785 381 234 161 8 chr3 34863170 34863294 -192661284 + MIR SINE MIR 115 257 -5 2264 107 16 47 chr3 34864503 34864888 -192659690 - THE1C LTR MaLR 0 375 3 223 222 0 0 chr3 34866200 34866245 -192658333 - MIR SINE MIR -17 245 201 239 263 0 0 chr3 34866698 34866774 -192657804 + MER113 DNA MER1_type? 2 77 -444 22 70 0 0 chr3 34867712 34867755 -192656823 + AT_rich Low_complexity Low_complexity 1 43 0 190 231 19 19 chr3 34868246 34868298 -192656280 - MIR SINE MIR -90 172 121 1501 136 0 42 chr3 34869562 34869798 -192654780 + AluSg/x SINE Alu 85 310 -2 743 174 0 0 chr3 34870017 34870132 -192654446 + FLAM_A SINE Alu 1 115 -18 2220 99 7 0 chr3 34870224 34870517 -192654061 - AluSq SINE Alu -18 295 1 373 253 0 22 chr3 34871117 34871208 -192653370 - MIR3 SINE MIR -10 198 110 431 250 181 0 chr3 34871288 34871432 -192653146 + MER5A DNA MER1_type 20 189 0 199 313 15 0 chr3 34872118 34872185 -192652393 - L2 LINE L2 -4 3268 3201 191 325 12 77 chr3 34872309 34872478 -192652100 - L2 LINE L2 -182 3090 2933 205 167 37 0 chr3 34873282 34873336 -192651242 + GA-rich Low_complexity Low_complexity 2 57 0 330 280 114 0 chr3 34873336 34873468 -192651110 + MER103 DNA DNA 1 147 -19 192 175 32 111 chr3 34874219 34874282 -192650296 + L2 LINE L2 2697 2754 -560 2304 53 0 3 chr3 34874290 34874609 -192649969 - AluY SINE Alu 0 318 1 189 353 32 39 chr3 34874731 34874887 -192649691 - L2 LINE L2 -833 2481 2327 762 105 21 35 chr3 34874894 34875037 -192649541 - Charlie1 DNA MER1_type -2 2759 2619 * 791 219 37 66 chr3 34875020 34875262 -192649316 - Charlie1 DNA MER1_type -2522 239 5 258 257 54 68 chr3 34875664 34875894 -192648684 - L1MEd LINE L1 -4862 1257 1111 378 283 0 8 chr3 34876931 34877051 -192647527 + MER94 DNA DNA 10 128 -6 507 192 192 6 chr3 34877734 34877886 -192646692 + MER5A DNA MER1_type 4 188 -1 1592 129 0 9 chr3 34877895 34878120 -192646458 + AluSx SINE Alu 1 223 -89 1561 245 78 41 chr3 34878975 34879530 -192645048 - MER119 DNA MER1_type -8 575 1 772 289 44 21 chr3 34879543 34879892 -192644686 - LTR16A1 LTR ERVL -2 455 127 210 191 24 24 chr3 34880857 34880899 -192643679 - MIR SINE MIR -138 70 29 1655 248 85 10 chr3 34880903 34881420 -192643158 + L2 LINE L2 2338 2893 -421 188 65 0 32 chr3 34882130 34882161 -192642417 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr3 34883025 34883046 -192641532 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 34883188 34883208 -192641370 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 133 0 0 chr3 34883437 34883467 -192641111 + (CATA)n Simple_repeat Simple_repeat 2 31 0 225 328 141 8 chr3 34883560 34883688 -192640890 - MIR3 SINE MIR -61 147 3 1068 282 102 21 chr3 34884700 34885348 -192639230 - L2 LINE L2 -16 3297 2572 258 200 0 18 chr3 34885378 34885433 -192639145 - L2 LINE L2 -937 2377 2324 2385 94 51 14 chr3 34885494 34885845 -192638733 + THE1B LTR MaLR 1 364 0 456 188 46 11 chr3 34886410 34886651 -192637927 + MER2 DNA MER2_type 2 345 0 354 240 74 25 chr3 34887006 34887127 -192637451 + L1ME4a LINE L1 5968 6094 -27 194 326 22 11 chr3 34887222 34887314 -192637264 - L2 LINE L2 -289 2983 2891 2350 103 0 7 chr3 34887460 34887770 -192636808 + AluSx SINE Alu 1 308 -4 566 248 89 32 chr3 34889690 34890061 -192634517 + L1M4 LINE L1 2955 3346 -2800 2211 99 7 0 chr3 34890061 34890355 -192634223 + AluSx SINE Alu 1 296 -16 311 307 100 32 chr3 34892744 34893083 -192631495 - MLT1J LTR MaLR -75 436 75 1064 186 201 21 chr3 34893333 34893710 -192630868 - MER31B LTR ERV1 -4 510 1 21 0 0 0 chr3 34894013 34894034 -192630544 + AT_rich Low_complexity Low_complexity 1 21 0 5715 243 78 20 chr3 34894805 34895000 -192629578 + L1MA4A LINE L1 119 301 -6548 2248 123 0 0 chr3 34895000 34895302 -192629276 + AluSq SINE Alu 1 302 -11 5715 243 78 20 chr3 34895302 34896793 -192627785 + L1MA4A LINE L1 301 1909 -4940 2249 110 0 3 chr3 34896793 34897093 -192627485 + AluSx SINE Alu 1 299 -13 5715 243 78 20 chr3 34897093 34897116 -192627462 + L1MA4A LINE L1 1909 1929 -4920 * 11733 174 32 33 chr3 34897094 34899681 -192624897 + L1MA4A LINE L1 3190 5775 -1073 6586 65 20 0 chr3 34899681 34900611 -192623967 - L1PA6 LINE L1 0 6154 5203 11733 174 32 33 chr3 34900611 34900870 -192623708 + L1MA4A LINE L1 5775 6033 -815 828 128 0 0 chr3 34900867 34901000 -192623578 - L1PA8 LINE L1 -938 5208 5076 * 6877 70 1 13 chr3 34901000 34901235 -192623343 + L1PA8 LINE L1 5206 5442 -730 2303 114 0 0 chr3 34901235 34901533 -192623045 + AluSg SINE Alu 1 298 -12 6877 70 1 13 chr3 34901533 34902270 -192622308 + L1PA8 LINE L1 5442 6168 -4 3960 140 17 3 chr3 34902271 34902964 -192621614 + L1MA4A LINE L1 6022 6724 -281 22 0 0 0 chr3 34906765 34906787 -192617791 + AT_rich Low_complexity Low_complexity 1 22 0 490 261 36 12 chr3 34907815 34907980 -192616598 + L2 LINE L2 3096 3264 -49 303 306 0 0 chr3 34907982 34908067 -192616511 - MER5B DNA MER1_type -93 85 1 2303 84 44 0 chr3 34908655 34908952 -192615626 + AluSp SINE Alu 1 310 -3 751 269 57 0 chr3 34909201 34909394 -192615184 + MIR SINE MIR 9 212 -50 282 259 49 12 chr3 34909379 34909460 -192615118 - MIR SINE MIR -13 249 166 * 182 413 130 0 chr3 34910054 34910284 -192614294 + L2 LINE L2 3030 3289 -24 368 339 24 8 chr3 34910370 34910494 -192614084 - L2 LINE L2 0 3313 3188 550 291 195 5 chr3 34912791 34913001 -192611577 + MIR SINE MIR 13 262 0 286 258 0 45 chr3 34913145 34913211 -192611367 + MIR SINE MIR 20 82 -180 201 125 50 0 chr3 34915130 34915170 -192609408 - L2 LINE L2 -2 3311 3270 1513 268 153 52 chr3 34916592 34917320 -192607258 + L2 LINE L2 2090 2962 -351 1086 218 20 96 chr3 34917320 34917652 -192606926 + MLT1A1 LTR MaLR 1 300 -65 1508 216 7 10 chr3 34917652 34917943 -192606635 + AluJo SINE Alu 2 291 -21 1086 218 20 96 chr3 34917943 34918004 -192606574 + MLT1A1 LTR MaLR 300 364 -1 1513 268 153 52 chr3 34918004 34918355 -192606223 + L2 LINE L2 2962 3276 -37 321 164 194 0 chr3 34918911 34918978 -192605600 - MER5C DNA MER1_type -2 322 243 383 202 18 79 chr3 34919037 34919151 -192605427 - MER5C DNA MER1_type -200 124 18 2212 112 10 3 chr3 34920344 34920640 -192603938 + AluSx SINE Alu 1 298 -14 645 174 14 7 chr3 34921086 34921224 -192603354 + L1MD3 LINE L1 7840 7978 -17 266 231 103 13 chr3 34921861 34921939 -192602639 - MIR3 SINE MIR -43 165 81 196 280 0 20 chr3 34922422 34922472 -192602106 - L2 LINE L2 -15 3257 3209 351 173 160 0 chr3 34922976 34923051 -192601527 - L2 LINE L2 0 3313 3227 5499 121 4 4 chr3 34924591 34925975 -192598603 - L1P4 LINE L1 -352 5822 4441 235 293 38 38 chr3 34926118 34926224 -192598354 - MIR SINE MIR 0 262 157 198 294 0 0 chr3 34926761 34926812 -192597766 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 34926851 34926878 -192597700 + (TAG)n Simple_repeat Simple_repeat 3 29 0 300 96 19 19 chr3 34927066 34927118 -192597460 - MIR SINE MIR -121 141 90 613 308 13 36 chr3 34927859 34928083 -192596495 + MIR SINE MIR 18 236 -26 2097 119 0 35 chr3 34929655 34929965 -192594613 + AluSg SINE Alu 1 299 -11 1950 223 85 31 chr3 34930003 34930554 -192594024 + MLT1E LTR MaLR 2 582 -11 197 204 82 0 chr3 34930570 34930619 -192593959 - L2 LINE L2 -1 3271 3219 1824 143 11 0 chr3 34931257 34931530 -192593048 - AluSx SINE Alu -30 282 7 1548 105 5 5 chr3 34931714 34931923 -192592655 + AluSx SINE Alu 1 209 -103 661 183 108 0 chr3 34931923 34932043 -192592535 + AluJo/FRAM SINE Alu 148 280 -32 2701 235 52 18 chr3 34932239 34933055 -192591523 + L1ME2 LINE L1 5317 6169 -9 2208 218 104 63 chr3 34933063 34934088 -192590490 + L1MC5 LINE L1 6607 7678 -283 427 248 13 19 chr3 34934114 34934271 -192590307 + L1MC5 LINE L1 7756 7911 -50 2321 36 39 42 chr3 34934398 34934706 -192589872 - AluY SINE Alu -4 307 1 739 203 58 76 chr3 34935892 34936014 -192588564 + ORSL DNA AcHobo 1 124 -151 2384 74 0 0 chr3 34936014 34936312 -192588266 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 34936312 34936335 -192588243 + (TA)n Simple_repeat Simple_repeat 2 24 0 739 203 58 76 chr3 34936335 34936487 -192588091 + ORSL DNA AcHobo 122 271 -4 28 48 0 0 chr3 34936933 34936975 -192587603 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 34937047 34937131 -192587447 + (CCG)n Simple_repeat Simple_repeat 3 90 0 590 147 42 0 chr3 34938601 34938696 -192585882 + AluS SINE Alu 1 99 -214 1639 113 34 8 chr3 34938696 34938935 -192585643 + AluSx SINE Alu 54 298 -14 1068 90 8 0 chr3 34940033 34940167 -192584411 + AluY SINE Alu 1 135 -176 202 180 60 20 chr3 34940168 34940268 -192584310 + A-rich Low_complexity Low_complexity 1 104 0 557 163 96 22 chr3 34941583 34941648 -192582930 - MER69 DNA AcHobo 0 2526 2467 2123 120 3 22 chr3 34941648 34941938 -192582640 + AluSx SINE Alu 1 288 -24 244 0 0 0 chr3 34941938 34941965 -192582613 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2123 120 3 22 chr3 34941965 34941990 -192582588 + AluSx SINE Alu 288 312 0 557 163 96 22 chr3 34941990 34942059 -192582519 - MER69 DNA AcHobo -59 2467 2382 313 217 0 0 chr3 34942212 34942272 -192582306 - MER69 DNA AcHobo -2465 61 2 1875 151 10 10 chr3 34942543 34942835 -192581743 + AluSx SINE Alu 1 292 -20 254 273 0 0 chr3 34942863 34942929 -192581649 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 34942974 34942996 -192581582 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 34943203 34943240 -192581338 + (TG)n Simple_repeat Simple_repeat 2 38 0 2307 123 27 6 chr3 34943262 34943628 -192580950 + THE1C LTR MaLR 2 375 0 809 301 15 4 chr3 34944108 34944367 -192580211 + MIR SINE MIR 1 262 0 2253 102 3 10 chr3 34944841 34945145 -192579433 + AluSx SINE Alu 1 302 -10 1133 136 27 0 chr3 34945829 34946013 -192578565 - MER57B LTR ERV1 0 434 246 2184 120 3 0 chr3 34946383 34946691 -192577887 + AluSx SINE Alu 1 309 -3 1841 153 27 17 chr3 34946904 34947199 -192577379 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 34947244 34947290 -192577288 + AT_rich Low_complexity Low_complexity 1 46 0 2379 89 0 10 chr3 34947349 34947663 -192576915 + AluSx SINE Alu 1 311 -1 359 327 20 20 chr3 34948698 34948848 -192575730 - L2 LINE L2 0 3272 3123 621 251 112 18 chr3 34949110 34949333 -192575245 - MIR SINE MIR -3 259 16 244 255 0 0 chr3 34949676 34949727 -192574851 + L2 LINE L2 3219 3269 -3 454 273 70 0 chr3 34949736 34949864 -192574714 - LTR16C LTR ERVL 0 491 355 1709 182 20 0 chr3 34949864 34950161 -192574417 + AluJb SINE Alu 1 303 -9 599 259 184 9 chr3 34950164 34950392 -192574186 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 34950578 34950643 -192573935 + GA-rich Low_complexity Low_complexity 3 65 0 2313 76 31 0 chr3 34951529 34951820 -192572758 + AluY SINE Alu 1 300 -11 426 306 126 10 chr3 34952502 34952525 -192572053 + MIR SINE MIR 1 20 -242 1807 172 47 0 chr3 34952525 34952821 -192571757 + AluJo SINE Alu 1 310 -2 426 306 126 10 chr3 34952821 34952996 -192571582 + MIR SINE MIR 20 222 -40 653 206 22 15 chr3 34953519 34953655 -192570923 - FLAM_A SINE Alu 0 142 6 355 217 9 85 chr3 34953674 34953780 -192570798 - L1ME LINE L1 -443 5719 5622 256 310 0 0 chr3 34953829 34953900 -192570678 + L2 LINE L2 3188 3258 -55 1793 189 46 9 chr3 34953901 34954250 -192570328 - MLT1A2 LTR MaLR -7 367 6 * 2324 180 27 56 chr3 34954247 34954731 -192569847 + MER82 DNA MER2_type 162 631 -22 262 274 0 0 chr3 34954932 34954994 -192569584 + L2 LINE L2 3201 3262 -10 291 273 68 15 chr3 34956082 34956214 -192568364 + L1ME4a LINE L1 5966 6104 -17 2137 208 223 52 chr3 34956345 34957129 -192567449 + L1MC3 LINE L1 6176 7093 -692 409 245 0 32 chr3 34957129 34957223 -192567355 + MLT1F1 LTR MaLR 35 125 -442 383 220 44 11 chr3 34957253 34957344 -192567234 - MER5A DNA MER1_type -95 94 1 381 216 6 16 chr3 34957610 34957703 -192566875 - MER5A DNA MER1_type 0 189 86 966 208 47 24 chr3 34957706 34957961 -192566617 - MIR SINE MIR 0 262 2 828 285 162 15 chr3 34957983 34958323 -192566255 - LTR16C LTR ERVL -3 488 99 1686 179 0 38 chr3 34958419 34958732 -192565846 - AluJo SINE Alu -11 301 1 1142 181 177 12 chr3 34958862 34959111 -192565467 + AluSc SINE Alu 1 290 -9 2311 111 0 0 chr3 34959182 34959479 -192565099 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr3 34960417 34960456 -192564122 + AT_rich Low_complexity Low_complexity 1 39 0 1709 168 45 0 chr3 34960461 34960747 -192563831 + AluJo SINE Alu 3 301 -11 21 36 0 0 chr3 34960975 34961003 -192563575 + AT_rich Low_complexity Low_complexity 1 28 0 262 247 12 12 chr3 34961143 34961224 -192563354 + L2 LINE L2 3198 3278 -35 21 36 0 0 chr3 34962848 34962876 -192561702 + AT_rich Low_complexity Low_complexity 1 28 0 1283 187 0 123 chr3 34963523 34963659 -192560919 + AluSx SINE Alu 3 73 -239 1687 127 4 4 chr3 34963659 34963896 -192560682 + AluSg SINE Alu 61 297 -13 1283 187 0 123 chr3 34963896 34964101 -192560477 + AluSx SINE Alu 73 302 -10 1578 152 3 87 chr3 34964561 34964897 -192559681 - AluJo SINE Alu 0 310 1 559 226 91 178 chr3 34965413 34965578 -192559000 - Charlie8 DNA MER1_type -1892 525 347 2115 136 13 3 chr3 34965578 34965880 -192558698 - AluSx SINE Alu -7 305 1 559 226 91 178 chr3 34965880 34966286 -192558292 - Charlie8 DNA MER1_type -2070 347 4 1288 187 11 41 chr3 34967263 34967531 -192557047 - AluJb SINE Alu -52 260 1 2096 121 0 3 chr3 34967540 34967851 -192556727 - AluSx SINE Alu 0 310 1 560 225 33 7 chr3 34967855 34968006 -192556572 + L1M4 LINE L1 4849 5003 -1143 1260 111 82 19 chr3 34968007 34968215 -192556363 + AluSq SINE Alu 85 305 -8 1942 160 0 10 chr3 34968352 34968658 -192555920 - AluSx SINE Alu -9 303 1 881 139 13 6 chr3 34968661 34968819 -192555759 - L1MA5 LINE L1 0 6300 6142 1387 151 37 4 chr3 34968883 34969157 -192555421 - L1MA5 LINE L1 -23 6145 5875 202 336 16 8 chr3 34969222 34969350 -192555228 + GA-rich Low_complexity Low_complexity 1 129 0 2152 131 0 16 chr3 34971422 34971734 -192552844 + AluSq SINE Alu 1 307 -6 2353 104 7 0 chr3 34971735 34972043 -192552535 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 34972145 34972307 -192552271 + (TA)n Simple_repeat Simple_repeat 2 166 0 2089 113 51 0 chr3 34972632 34972925 -192551653 - AluSg SINE Alu -2 308 1 607 200 0 0 chr3 34973069 34973169 -192551409 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 34973201 34973271 -192551307 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 34973241 34973303 -192551275 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 34973674 34973742 -192550836 + GA-rich Low_complexity Low_complexity 3 72 0 4039 140 13 13 chr3 34973813 34973997 -192550581 - MER41B LTR ERV1 0 635 452 2122 110 7 26 chr3 34973997 34974306 -192550272 - AluSx SINE Alu -9 303 1 4039 140 13 13 chr3 34974306 34974756 -192549822 - MER41B LTR ERV1 -182 453 1 2002 160 0 3 chr3 34974961 34975274 -192549304 + AluJb SINE Alu 1 312 0 248 212 52 40 chr3 34975578 34975701 -192548877 + LTR16C LTR ERVL 333 490 -1 1316 184 98 133 chr3 34976951 34977031 -192547547 - L1ME2 LINE L1 -9 6155 6074 2128 120 0 22 chr3 34977031 34977348 -192547230 + AluSx SINE Alu 1 310 -2 1316 184 98 133 chr3 34977348 34977574 -192547004 - L1ME2 LINE L1 -90 6074 5872 2154 125 0 0 chr3 34977574 34977863 -192546715 - AluSg SINE Alu -21 289 1 1316 184 98 133 chr3 34977863 34978083 -192546495 - L1ME2 LINE L1 -292 5872 5646 1380 168 111 68 chr3 34978107 34978531 -192546047 + LTR7 LTR ERV1 1 442 -8 2296 166 60 56 chr3 34978539 34979400 -192545178 + HERVH LTR ERV1 1 1182 -6531 1466 157 4 25 chr3 34979398 34979672 -192544906 + HERVH LTR ERV1 2728 2995 -4718 * 3570 142 9 8 chr3 34979651 34980898 -192543680 + HERVH LTR ERV1 3140 5286 -1805 1628 153 10 37 chr3 34981201 34981495 -192543083 - AluJb SINE Alu -18 294 9 248 205 0 58 chr3 34981871 34982096 -192542482 + AluJo SINE Alu 2 291 -11 436 225 62 62 chr3 34982834 34983012 -192541566 + MIR SINE MIR 32 209 -53 2063 130 0 3 chr3 34983201 34983485 -192541093 + AluSx SINE Alu 1 283 -29 1946 124 13 23 chr3 34983529 34983828 -192540750 + AluSx SINE Alu 1 296 -16 1249 73 11 0 chr3 34983948 34984126 -192540452 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 837 141 0 37 chr3 34984144 34984279 -192540299 + AluSq/x SINE Alu 2 131 -182 949 104 0 0 chr3 34984285 34984419 -192540159 - AluSg/x SINE Alu -2 308 175 554 178 28 188 chr3 34984430 34984643 -192539935 - MER74A LTR ERVL -350 208 30 2036 165 8 61 chr3 34984689 34985084 -192539494 - MLT1B LTR MaLR 0 390 17 1932 112 76 0 chr3 34985119 34985396 -192539182 + AluSp SINE Alu 1 298 -15 2060 122 14 0 chr3 34985563 34985871 -192538707 + AluSx SINE Alu 1 312 0 330 87 0 0 chr3 34986187 34986233 -192538345 + (CA)n Simple_repeat Simple_repeat 2 47 0 2158 110 17 3 chr3 34986535 34986826 -192537752 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 34986900 34987019 -192537559 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 34987662 34987948 -192536630 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 34987959 34988221 -192536357 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 34988221 34988283 -192536295 - AluS SINE Alu -246 67 6 423 248 35 35 chr3 34988299 34988412 -192536166 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 34988414 34988727 -192535851 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 34988737 34988914 -192535664 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 34988934 34989231 -192535347 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 34989388 34989524 -192535054 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 34990289 34990355 -192534223 - L2 LINE L2 -1 3312 3241 1182 122 6 0 chr3 34990402 34990566 -192534012 - AluSg/x SINE Alu -9 303 139 265 162 14 14 chr3 34992381 34992455 -192532123 + CT-rich Low_complexity Low_complexity 3 76 0 2276 105 3 7 chr3 34992531 34992826 -192531752 + AluSx SINE Alu 1 294 -18 1355 215 33 10 chr3 34992945 34993247 -192531331 + AluJo SINE Alu 3 311 -1 2310 98 0 19 chr3 34993247 34993562 -192531016 + AluY SINE Alu 1 309 -2 2275 67 44 10 chr3 34993642 34993939 -192530639 + AluY SINE Alu 1 307 -4 1074 168 31 75 chr3 34995023 34995155 -192529423 + MER20 DNA MER1_type 1 120 -99 1520 232 118 47 chr3 34995155 34995578 -192529000 - LTR27 LTR ERV1 -1 635 157 2008 152 7 0 chr3 34995578 34995874 -192528704 + AluSp SINE Alu 1 298 -15 1520 232 118 47 chr3 34995874 34996041 -192528537 - LTR27 LTR ERV1 -479 157 3 1074 168 31 75 chr3 34996041 34996134 -192528444 + MER20 DNA MER1_type 120 216 -3 341 300 30 0 chr3 34996914 34997014 -192527564 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 34997014 34997037 -192527541 + AT_rich Low_complexity Low_complexity 1 23 0 1137 142 0 0 chr3 34997038 34997200 -192527378 - AluSg/x SINE Alu -22 288 127 184 98 244 0 chr3 34997204 34997245 -192527333 + MIR SINE MIR 93 143 -119 783 170 7 15 chr3 34997252 34997387 -192527191 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 34997759 34997843 -192526735 + LTR16A1 LTR ERVL 346 431 -26 347 224 0 0 chr3 34997843 34997910 -192526668 + MIR SINE MIR 186 252 -10 2105 114 3 7 chr3 34998402 34998691 -192525887 + AluSx SINE Alu 1 288 -24 183 344 0 16 chr3 34998912 34998973 -192525605 + L2 LINE L2 3127 3186 -86 705 175 0 8 chr3 34999278 34999398 -192525180 + FLAM_A SINE Alu 16 134 -8 226 291 116 0 chr3 34999578 34999664 -192524914 + MIR3 SINE MIR 65 160 -48 905 230 10 0 chr3 34999669 34999869 -192524709 - MER3 DNA MER1_type -5 204 3 2180 100 7 23 chr3 34999971 35000272 -192524306 + AluSx SINE Alu 1 296 -16 2209 116 39 0 chr3 35000643 35000979 -192523599 - L1PA11 LINE L1 -4 6170 5822 438 206 40 29 chr3 35001100 35001275 -192523303 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 2075 111 36 16 chr3 35001402 35001708 -192522870 - AluSx SINE Alu 0 312 1 329 158 40 13 chr3 35002103 35002179 -192522399 - L1MC4 LINE L1 0 8042 7965 1863 185 25 11 chr3 35002180 35002536 -192522042 + MLT1A2 LTR MaLR 1 361 -13 621 123 0 290 chr3 35002540 35002736 -192521842 - L1MC4 LINE L1 -75 7967 7716 1832 72 5 0 chr3 35002736 35002958 -192521620 + AluSp SINE Alu 1 223 -90 260 111 0 0 chr3 35002958 35003003 -192521575 + AluSp SINE Alu 257 301 -2 621 123 0 290 chr3 35003003 35003017 -192521561 - L1MC4 LINE L1 -325 7717 7864 2344 96 0 0 chr3 35003017 35003310 -192521268 + AluSg1 SINE Alu 1 293 -16 621 123 0 290 chr3 35003310 35003450 -192521128 - L1MC4 LINE L1 -177 7865 7686 401 328 8 8 chr3 35003465 35003599 -192520979 + MIR SINE MIR 126 259 -3 724 218 163 44 chr3 35004244 35004563 -192520015 + MLT1J1 LTR MaLR 104 433 -13 231 253 40 27 chr3 35004599 35004674 -192519904 + MIR SINE MIR 37 112 -96 1711 180 7 7 chr3 35004975 35005280 -192519298 - AluJo SINE Alu -7 305 1 1661 166 254 56 chr3 35005319 35005838 -192518740 - LTR29 LTR ERV1 0 622 1 1712 143 51 11 chr3 35005881 35006178 -192518400 + AluJb SINE Alu 1 308 0 2080 136 3 0 chr3 35006291 35006577 -192518001 - AluSg SINE Alu -23 287 1 187 310 46 23 chr3 35007303 35007390 -192517188 + MIR3 SINE MIR 98 186 -22 214 328 171 26 chr3 35007563 35007944 -192516634 - L2 LINE L2 -468 2846 2411 519 214 0 10 chr3 35007982 35008080 -192516498 + AluSg/x SINE Alu 113 209 -103 1290 181 107 65 chr3 35008080 35008512 -192516066 + LTR7 LTR ERV1 1 450 0 2716 136 11 24 chr3 35008512 35008977 -192515601 + HERVH LTR ERV1 1 459 -7254 292 221 91 28 chr3 35008959 35009161 -192515417 + HERVH LTR ERV1 346 620 -7093 * 10527 103 9 32 chr3 35009148 35010747 -192513831 + HERVH LTR ERV1 756 2317 -5396 2286 114 3 0 chr3 35010972 35011280 -192513298 - AluSc SINE Alu 0 309 1 1563 180 7 20 chr3 35011846 35012141 -192512437 - AluJo SINE Alu -21 291 1 2191 112 0 3 chr3 35012244 35012540 -192512038 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 35012899 35012922 -192511656 + (GA)n Simple_repeat Simple_repeat 2 24 0 367 219 104 0 chr3 35013064 35013160 -192511418 + MER53 DNA DNA 2 107 -82 227 354 107 41 chr3 35013215 35013792 -192510786 - L2 LINE L2 -2 3270 2656 310 104 0 0 chr3 35013899 35013947 -192510631 - Alu SINE Alu -17 285 238 525 146 146 0 chr3 35013949 35014038 -192510540 + AluJo SINE Alu 72 173 -139 * 595 50 25 12 chr3 35014035 35014115 -192510463 + AluSg/x SINE Alu 218 298 -11 2252 118 0 3 chr3 35014118 35014414 -192510164 + AluSq SINE Alu 1 295 -18 21 36 0 0 chr3 35014799 35014827 -192509751 + AT_rich Low_complexity Low_complexity 1 28 0 502 154 13 0 chr3 35014834 35014912 -192509666 + MER51A LTR ERV1 469 547 -87 432 278 120 0 chr3 35014923 35015031 -192509547 - AluSq/x SINE Alu -181 121 1 1540 165 0 0 chr3 35015056 35015286 -192509292 + AluJb SINE Alu 1 230 -82 189 107 0 0 chr3 35015302 35015330 -192509248 + (A)n Simple_repeat Simple_repeat 1 28 0 400 243 98 35 chr3 35015338 35015511 -192509067 - MIR SINE MIR -32 230 47 785 71 0 0 chr3 35015803 35015901 -192508677 - HY3 scRNA scRNA -2 99 2 448 363 50 40 chr3 35015966 35016310 -192508268 + L3 LINE CR1 265 615 -962 1834 172 0 13 chr3 35016310 35016612 -192507966 - AluJb SINE Alu -11 301 4 448 363 50 40 chr3 35016612 35016666 -192507912 + L3 LINE CR1 615 667 -910 368 275 63 7 chr3 35016680 35016822 -192507756 + L2 LINE L2 2267 2416 -898 350 301 63 121 chr3 35016831 35017260 -192507318 - MLT1K LTR MaLR -5 583 180 1347 160 44 0 chr3 35017389 35017614 -192506964 - AluJo SINE Alu -8 304 70 910 201 115 63 chr3 35017614 35017997 -192506581 - LTR7 LTR ERV1 0 450 48 5879 131 36 32 chr3 35018133 35019508 -192505070 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 35019588 35019649 -192504929 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 311 0 0 25 chr3 35020440 35020480 -192504098 + (TG)n Simple_repeat Simple_repeat 2 40 0 407 258 10 93 chr3 35020935 35021129 -192503449 - MER5B DNA MER1_type 0 178 1 884 203 7 0 chr3 35021139 35021292 -192503286 + FRAM SINE Alu 4 157 -19 2406 87 7 0 chr3 35021858 35022168 -192502410 - AluSp SINE Alu -1 312 1 2287 123 0 0 chr3 35023297 35023607 -192500971 + AluSx SINE Alu 1 310 -2 245 339 46 23 chr3 35024359 35024533 -192500045 - MIR3 SINE MIR -1 207 30 306 254 51 43 chr3 35024601 35024739 -192499839 + L2 LINE L2 2934 3072 -200 1951 77 168 34 chr3 35025301 35025614 -192498964 - MER39B LTR ERV1 -244 409 43 222 37 0 0 chr3 35025614 35025641 -192498937 + (GA)n Simple_repeat Simple_repeat 1 27 0 1951 77 168 34 chr3 35025641 35025678 -192498900 - MER39B LTR ERV1 -610 43 12 218 200 40 0 chr3 35026044 35026094 -192498484 + T-rich Low_complexity Low_complexity 5 56 0 1965 116 3 21 chr3 35026113 35026398 -192498180 - AluSx SINE Alu -32 280 1 1372 140 8 29 chr3 35026399 35026642 -192497936 + MER39B LTR ERV1 413 650 -3 2298 96 0 23 chr3 35026700 35027001 -192497577 + AluSg SINE Alu 1 294 -16 2095 123 7 3 chr3 35027026 35027335 -192497243 + AluSg SINE Alu 1 310 0 238 262 74 66 chr3 35027352 35027474 -192497104 - MLT1L LTR MaLR -348 267 145 435 242 128 40 chr3 35027694 35027843 -192496735 - MIR SINE MIR -54 208 47 180 286 0 48 chr3 35027942 35028005 -192496573 - L2 LINE L2 -4 3268 3209 247 300 0 0 chr3 35028381 35028451 -192496127 - MER117 DNA MER1_type -50 147 78 1676 151 88 18 chr3 35028511 35028693 -192495885 + AluJb SINE Alu 1 169 -143 2633 187 57 88 chr3 35028693 35028872 -192495706 - LTR8A LTR ERV1 0 727 544 1790 105 93 0 chr3 35028872 35029168 -192495410 - AluSg SINE Alu 0 320 1 2633 187 57 88 chr3 35029168 35029197 -192495381 - LTR8A LTR ERV1 -183 544 516 2236 110 3 0 chr3 35029197 35029489 -192495089 - AluSq SINE Alu -20 293 1 2633 187 57 88 chr3 35029489 35030028 -192494550 - LTR8A LTR ERV1 -211 516 1 1676 151 88 18 chr3 35030028 35030130 -192494448 + AluJb SINE Alu 169 305 -7 526 336 40 5 chr3 35030211 35030434 -192494144 - MIR SINE MIR -31 231 1 751 122 9 0 chr3 35030836 35030943 -192493635 - AluSg/x SINE Alu -11 298 191 2345 112 0 0 chr3 35031139 35031443 -192493135 - AluSg1 SINE Alu -5 304 1 905 211 26 5 chr3 35031489 35031679 -192492899 + L1ME LINE L1 5464 5657 -507 1808 161 3 14 chr3 35031679 35031965 -192492613 + AluJo SINE Alu 1 283 -29 1321 162 92 123 chr3 35031966 35032422 -192492156 - LTR7 LTR ERV1 -8 442 1 3078 81 7 11 chr3 35032422 35032855 -192491723 - HERVH LTR ERV1 0 7713 7283 3468 132 0 8 chr3 35032858 35033351 -192491227 - HERVH LTR ERV1 -2697 5016 4528 251 289 54 66 chr3 35033480 35033646 -192490932 - L3 LINE CR1 -267 1310 1147 187 250 0 0 chr3 35034205 35034249 -192490329 - MIR SINE MIR -60 148 105 924 289 124 36 chr3 35034304 35034517 -192490061 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 35034517 35034537 -192490041 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 924 289 124 36 chr3 35034537 35034548 -192490030 + MLT1K LTR MaLR 203 212 -376 2062 124 28 0 chr3 35034548 35034830 -192489748 - AluSg SINE Alu -20 290 1 924 289 124 36 chr3 35034830 35035071 -192489507 + MLT1K LTR MaLR 212 517 -71 231 288 27 0 chr3 35035081 35035154 -192489424 + CT-rich Low_complexity Low_complexity 5 79 0 2314 176 24 12 chr3 35035337 35035758 -192488820 + MSTB LTR MaLR 1 426 0 2218 113 3 0 chr3 35035810 35036103 -192488475 - AluSg SINE Alu -16 294 1 431 271 16 39 chr3 35036112 35036241 -192488337 - MIR SINE MIR -67 141 16 298 206 55 27 chr3 35036309 35036382 -192488196 + MIR3 SINE MIR 106 180 -28 183 129 0 0 chr3 35036486 35036517 -192488061 + (CA)n Simple_repeat Simple_repeat 1 31 0 2217 109 0 10 chr3 35036969 35037262 -192487316 - AluSg1 SINE Alu -18 291 2 28 29 0 0 chr3 35037262 35037297 -192487281 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 35037320 35037341 -192487237 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1923 160 0 0 chr3 35037344 35037631 -192486947 - AluSx SINE Alu -25 287 1 1628 204 83 39 chr3 35037829 35038240 -192486338 - MER21A LTR ERV1 0 931 503 1241 181 18 9 chr3 35038313 35038534 -192486044 - MER21B LTR ERV1 -638 225 3 23 68 0 0 chr3 35038930 35038974 -192485604 + AT_rich Low_complexity Low_complexity 1 44 0 1604 101 18 0 chr3 35039012 35039231 -192485347 - AluSg1 SINE Alu -86 223 1 952 204 81 50 chr3 35039267 35039332 -192485246 - MSTD LTR MaLR -7 389 327 2254 107 3 13 chr3 35039332 35039630 -192484948 + AluSx SINE Alu 1 295 -17 952 204 81 50 chr3 35039630 35039824 -192484754 - MSTD LTR MaLR -69 327 122 848 158 0 0 chr3 35039824 35039951 -192484627 + FLAM_C SINE Alu 1 127 -16 39 60 0 0 chr3 35039953 35040020 -192484558 + AT_rich Low_complexity Low_complexity 1 67 0 1468 193 0 63 chr3 35040021 35040352 -192484226 + AluJo SINE Alu 1 312 0 653 130 20 0 chr3 35040358 35040458 -192484120 - MSTD LTR MaLR -294 102 1 2266 128 0 3 chr3 35041319 35041632 -192482946 + AluSx SINE Alu 1 312 0 29 47 0 0 chr3 35041752 35041795 -192482783 + AT_rich Low_complexity Low_complexity 1 43 0 2877 144 45 19 chr3 35041795 35042231 -192482347 + L1MC2 LINE L1 5818 6270 -74 2345 98 0 10 chr3 35042231 35042537 -192482041 - AluSx SINE Alu -9 303 1 2877 144 45 19 chr3 35042537 35042612 -192481966 + L1MC2 LINE L1 6270 6342 -2 1943 115 0 77 chr3 35042932 35043244 -192481334 - AluSx SINE Alu -24 288 1 2384 102 0 3 chr3 35043270 35043583 -192480995 - AluSq SINE Alu -1 312 1 22 0 0 0 chr3 35044107 35044129 -192480449 + AT_rich Low_complexity Low_complexity 1 22 0 1617 183 74 0 chr3 35044129 35044414 -192480164 - AluJb SINE Alu -6 306 1 649 219 8 0 chr3 35044479 35044602 -192479976 - FLAM_C SINE Alu -19 124 1 429 223 45 0 chr3 35044609 35044721 -192479857 - L1M4 LINE L1 -3476 4089 3973 732 156 33 0 chr3 35044723 35044845 -192479733 + AluJo/FLAM SINE Alu 2 127 -175 2005 121 11 4 chr3 35044848 35045169 -192479409 + AluSq SINE Alu 1 323 0 1090 113 7 0 chr3 35045173 35045323 -192479255 + AluSq/x SINE Alu 1 151 -161 24 0 0 0 chr3 35045339 35045363 -192479215 + AT_rich Low_complexity Low_complexity 1 24 0 633 229 30 3 chr3 35045363 35045563 -192479015 - L1M4 LINE L1 -3945 3620 3419 824 178 0 0 chr3 35045720 35045849 -192478729 + FLAM_C SINE Alu 2 130 -3 2290 107 3 0 chr3 35045854 35046162 -192478416 + AluSp SINE Alu 1 309 -4 2161 142 3 0 chr3 35046278 35046587 -192477991 + AluSq SINE Alu 1 310 -3 2222 78 3 20 chr3 35046588 35046883 -192477695 + AluSp SINE Alu 1 290 -23 1131 309 109 5 chr3 35046883 35047488 -192477090 - L2 LINE L2 -25 3288 2627 2086 250 45 24 chr3 35047518 35048050 -192476528 + MLT1E LTR MaLR 51 593 0 755 253 39 0 chr3 35048050 35048232 -192476346 - L2 LINE L2 -678 2636 2448 2207 106 3 0 chr3 35048307 35048600 -192475978 + AluSp SINE Alu 1 294 -19 246 150 50 50 chr3 35048848 35048908 -192475670 + LTR32 LTR ERVL 320 379 -92 2179 94 7 10 chr3 35048918 35049225 -192475353 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 35049295 35049372 -192475206 + GA-rich Low_complexity Low_complexity 1 75 0 744 125 0 76 chr3 35049424 35049568 -192475010 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 35049759 35049801 -192474777 + (TG)n Simple_repeat Simple_repeat 2 43 0 2275 98 3 3 chr3 35049824 35050130 -192474448 + AluSq SINE Alu 1 306 -7 1194 186 55 122 chr3 35050190 35050381 -192474197 + MLT2C2 LTR ERVL 52 254 -210 2253 88 0 7 chr3 35050381 35050689 -192473889 + AluSg SINE Alu 1 306 0 1194 186 55 122 chr3 35050689 35050889 -192473689 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 35050889 35050946 -192473632 + (CA)n Simple_repeat Simple_repeat 1 57 0 1194 186 55 122 chr3 35050946 35050988 -192473590 + MLT2C2 LTR ERVL 415 458 -6 326 245 0 0 chr3 35050996 35051049 -192473529 - MER45 DNA AcHobo -900 53 1 181 235 0 111 chr3 35051470 35051551 -192473027 - L2 LINE L2 -106 3207 3136 1798 176 6 39 chr3 35051552 35051916 -192472662 + MLT1A1 LTR MaLR 1 352 -13 422 315 25 31 chr3 35051934 35052096 -192472482 - L2 LINE L2 -303 3010 2850 1932 95 0 0 chr3 35052098 35052339 -192472239 + AluSx SINE Alu 2 242 -70 221 0 0 33 chr3 35052353 35052383 -192472195 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 35052420 35052443 -192472135 + AT_rich Low_complexity Low_complexity 1 23 0 423 290 112 35 chr3 35052568 35052737 -192471841 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 35052745 35052799 -192471779 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 35052896 35052934 -192471644 + (TG)n Simple_repeat Simple_repeat 1 38 0 2000 110 26 0 chr3 35052934 35053206 -192471372 - AluSx SINE Alu -33 279 1 1701 169 3 34 chr3 35053330 35053626 -192470952 + AluJo SINE Alu 9 295 -17 1952 118 42 7 chr3 35053728 35054017 -192470561 - AluSc SINE Alu -10 299 1 372 70 35 8 chr3 35054018 35054086 -192470492 - Alu SINE Alu 0 300 243 586 147 0 0 chr3 35054189 35054284 -192470294 + L1MA5 LINE L1 6064 6158 -142 841 140 13 6 chr3 35054346 35054503 -192470075 + L1MA5 LINE L1 6143 6300 0 1971 151 0 10 chr3 35054506 35054805 -192469773 + AluSx SINE Alu 1 296 -16 509 253 0 35 chr3 35054805 35054979 -192469599 - L1M4 LINE L1 -980 5166 4999 1280 124 6 0 chr3 35054984 35055162 -192469416 - AluSg/x SINE Alu -16 296 118 1494 248 14 6 chr3 35055465 35055816 -192468762 + LTR16A LTR ERVL 92 445 -5 318 306 124 61 chr3 35056798 35057242 -192467336 + L2 LINE L2 2465 2936 -378 257 373 75 63 chr3 35057269 35057537 -192467041 + L2 LINE L2 3002 3272 0 228 331 57 24 chr3 35057973 35058097 -192466481 + MIR SINE MIR 70 197 -65 2079 97 30 20 chr3 35058255 35058430 -192466148 - AluSq SINE Alu -12 301 120 513 0 0 0 chr3 35058430 35058487 -192466091 + (TG)n Simple_repeat Simple_repeat 2 58 0 2079 97 30 20 chr3 35058487 35058609 -192465969 - AluSq SINE Alu -193 120 1 649 176 42 21 chr3 35058750 35058892 -192465686 - MIR SINE MIR -44 218 74 875 225 48 0 chr3 35058905 35059114 -192465464 - MIR SINE MIR 0 262 44 2088 96 0 11 chr3 35059679 35059960 -192464618 - AluSx SINE Alu 0 312 35 774 238 145 9 chr3 35060187 35060414 -192464164 - MIR SINE MIR -3 259 2 185 404 0 0 chr3 35060628 35060722 -192463856 + L2 LINE L2 3218 3311 -2 2196 93 10 3 chr3 35060889 35061191 -192463387 - AluSq SINE Alu -9 304 1 790 273 61 9 chr3 35061212 35061443 -192463135 - MIR SINE MIR -19 243 1 475 298 34 68 chr3 35061693 35061898 -192462680 - L2 LINE L2 0 3272 3075 267 305 123 65 chr3 35062021 35062092 -192462486 - L2 LINE L2 -556 2758 2693 2201 84 7 0 chr3 35062092 35062377 -192462201 + AluSx SINE Alu 1 287 -25 267 305 123 65 chr3 35062377 35062400 -192462178 - L2 LINE L2 -621 2693 2673 228 67 0 0 chr3 35062400 35062430 -192462148 + (TA)n Simple_repeat Simple_repeat 2 31 0 267 305 123 65 chr3 35062430 35062917 -192461661 - L2 LINE L2 -641 2673 2142 305 312 128 82 chr3 35063173 35063673 -192460905 + L1M2 LINE L1 910 1432 -5417 358 312 118 29 chr3 35064006 35064176 -192460402 + MIR3 SINE MIR 18 202 -6 184 327 64 36 chr3 35064240 35064350 -192460228 - MIR SINE MIR -116 146 34 1867 149 14 0 chr3 35064773 35065061 -192459517 + AluSx SINE Alu 1 292 -20 288 0 0 0 chr3 35065577 35065609 -192458969 + (CA)n Simple_repeat Simple_repeat 1 32 0 2331 78 7 7 chr3 35066151 35066460 -192458118 + AluY SINE Alu 1 309 -2 24 67 0 0 chr3 35067069 35067114 -192457464 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr3 35067554 35067603 -192456975 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr3 35069791 35069815 -192454763 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr3 35070944 35070977 -192453601 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr3 35071095 35071138 -192453440 + AT_rich Low_complexity Low_complexity 1 43 0 2212 113 0 0 chr3 35071484 35071776 -192452802 - AluSq SINE Alu -21 292 1 736 213 0 38 chr3 35072998 35073158 -192451420 - AluSp SINE Alu -24 289 136 2340 91 0 10 chr3 35074110 35074417 -192450161 + AluSg SINE Alu 1 304 -6 1843 121 78 11 chr3 35075887 35076169 -192448409 + AluSq SINE Alu 1 301 -12 632 160 0 0 chr3 35076216 35076316 -192448262 - AluSg/x SINE Alu -25 285 186 676 249 42 0 chr3 35077962 35078127 -192446451 - MER20 DNA MER1_type 0 219 48 215 0 0 62 chr3 35078510 35078542 -192446036 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 677 239 82 96 chr3 35078587 35078942 -192445636 + MLT1J LTR MaLR 162 511 0 1730 125 90 11 chr3 35079025 35079304 -192445274 + AluSx SINE Alu 1 301 -11 21 82 0 0 chr3 35079410 35079459 -192445119 + AT_rich Low_complexity Low_complexity 1 49 0 583 250 12 55 chr3 35080036 35080200 -192444378 + MIR SINE MIR 91 247 -15 207 276 17 0 chr3 35080227 35080285 -192444293 + CT-rich Low_complexity Low_complexity 4 62 0 515 320 96 45 chr3 35080830 35081479 -192443099 - L1M4 LINE L1 -743 5403 4722 422 212 23 30 chr3 35081613 35081745 -192442833 - L1ME3 LINE L1 -1 6161 6031 463 146 52 10 chr3 35081984 35082080 -192442498 + MLT1C LTR MaLR 1 100 -367 317 247 15 18 chr3 35082075 35082288 -192442290 + MLT1C LTR MaLR 206 467 0 * 606 307 93 58 chr3 35082556 35082951 -192441627 - L1M4 LINE L1 -2344 3802 3377 1055 222 209 3 chr3 35082951 35083271 -192441307 + MER58D DNA MER1_type 1 386 0 606 307 93 58 chr3 35083271 35083478 -192441100 - L1M4 LINE L1 -2769 3377 3179 284 258 98 45 chr3 35083482 35083837 -192440741 - L1M4 LINE L1 -3118 3028 2651 25 0 0 0 chr3 35084200 35084225 -192440353 + AT_rich Low_complexity Low_complexity 1 25 0 203 357 32 14 chr3 35084866 35084999 -192439579 + MIR SINE MIR 63 196 -66 1662 190 3 0 chr3 35085168 35085452 -192439126 - AluJo SINE Alu -12 300 16 282 301 43 0 chr3 35086431 35086524 -192438054 + MIR SINE MIR 154 250 -12 1943 144 3 3 chr3 35086906 35087191 -192437387 + AluSx SINE Alu 19 303 -9 332 319 59 55 chr3 35087191 35087445 -192437133 + HAL1 LINE L1 1026 1280 -1227 277 224 13 26 chr3 35087724 35087800 -192436778 + HAL1 LINE L1 1602 1676 -831 25 0 0 0 chr3 35088146 35088171 -192436407 + AT_rich Low_complexity Low_complexity 1 25 0 467 167 16 95 chr3 35088241 35088367 -192436211 - Charlie1 DNA MER1_type 0 2761 2646 1948 149 3 3 chr3 35088367 35088662 -192435916 - AluJb SINE Alu -15 297 3 22 0 0 0 chr3 35089464 35089486 -192435092 + AT_rich Low_complexity Low_complexity 1 22 0 843 294 49 67 chr3 35089589 35090003 -192434575 + MLT1H LTR MaLR 3 366 -189 31 26 0 0 chr3 35090973 35091011 -192433567 + AT_rich Low_complexity Low_complexity 1 38 0 2148 82 46 0 chr3 35091380 35091661 -192432917 - AluSq SINE Alu -19 294 1 540 233 23 34 chr3 35092765 35092941 -192431637 - MER104 DNA Tc2 -6 174 1 1561 167 38 3 chr3 35093776 35094069 -192430509 - AluJo SINE Alu -8 304 2 601 200 126 7 chr3 35094155 35094290 -192430288 + MER3 DNA MER1_type 59 209 0 211 243 136 82 chr3 35095891 35096097 -192428481 + MIR SINE MIR 35 251 -11 2162 116 3 0 chr3 35096763 35097057 -192427521 + AluSx SINE Alu 1 295 -17 33 43 0 0 chr3 35097925 35097972 -192426606 + AT_rich Low_complexity Low_complexity 1 47 0 206 267 0 17 chr3 35098145 35098205 -192426373 + (CCA)n Simple_repeat Simple_repeat 3 61 0 1942 112 18 0 chr3 35098435 35098739 -192425839 + AluSx SINE Alu 1 309 0 29 47 0 0 chr3 35099440 35099483 -192425095 + AT_rich Low_complexity Low_complexity 1 43 0 943 133 209 5 chr3 35099556 35099752 -192424826 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr3 35099897 35099927 -192424651 + AT_rich Low_complexity Low_complexity 1 30 0 296 315 77 5 chr3 35100443 35100596 -192423982 + MIR SINE MIR 7 159 -49 1516 176 36 19 chr3 35100992 35101299 -192423279 + AluJb SINE Alu 1 312 0 2253 98 0 0 chr3 35101545 35101841 -192422737 + AluSc SINE Alu 1 296 -13 555 198 60 0 chr3 35104592 35104708 -192419870 + L2 LINE L2 3187 3309 -4 35 63 0 0 chr3 35105798 35105861 -192418717 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr3 35107059 35107081 -192417497 + AT_rich Low_complexity Low_complexity 1 22 0 295 130 0 0 chr3 35107113 35107159 -192417419 - MADE1 DNA Mariner -34 46 1 466 284 88 67 chr3 35107222 35107746 -192416832 + L1MC4a LINE L1 3075 3609 -2537 604 291 65 34 chr3 35107874 35108290 -192416288 + L1MC4a LINE L1 3796 4224 -1922 2337 100 0 0 chr3 35108345 35108644 -192415934 + AluSq SINE Alu 1 299 -14 953 177 80 26 chr3 35108648 35108874 -192415704 - Tigger2 DNA MER2_type 0 2718 2481 * 12081 146 60 9 chr3 35108857 35111025 -192413553 - Tigger2 DNA MER2_type -439 2279 1 286 273 68 70 chr3 35111071 35111555 -192413023 + L1MC4a LINE L1 4386 4868 -1278 1586 204 0 0 chr3 35111819 35112108 -192412470 + AluJo SINE Alu 1 289 -23 1644 244 111 19 chr3 35112155 35112750 -192411828 + L1MC4a LINE L1 5451 6100 -1708 23 0 0 0 chr3 35112777 35112800 -192411778 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 35113217 35113239 -192411339 + AT_rich Low_complexity Low_complexity 1 22 0 508 311 93 44 chr3 35113363 35113633 -192410945 - L2 LINE L2 -4 3309 3027 2054 88 84 7 chr3 35113636 35113921 -192410657 + AluSc SINE Alu 3 309 0 554 123 0 0 chr3 35114741 35114822 -192409756 - AluS SINE Alu -232 81 1 1622 184 22 0 chr3 35114945 35115249 -192409329 + AluSx SINE Alu 1 310 0 21 0 0 0 chr3 35115515 35115536 -192409042 + AT_rich Low_complexity Low_complexity 1 21 0 1711 176 7 14 chr3 35116007 35116296 -192408282 - AluJo SINE Alu -25 287 1 21 0 0 0 chr3 35118072 35118093 -192406485 + AT_rich Low_complexity Low_complexity 1 21 0 217 354 0 42 chr3 35118496 35118592 -192405986 + MIR SINE MIR 21 112 -150 2356 95 3 0 chr3 35118816 35119121 -192405457 + AluSq SINE Alu 1 306 -7 2456 80 3 0 chr3 35119122 35119434 -192405144 + AluSp SINE Alu 1 313 0 21 82 0 0 chr3 35120716 35120765 -192403813 + AT_rich Low_complexity Low_complexity 1 49 0 913 157 74 65 chr3 35120784 35121001 -192403577 + MER20 DNA MER1_type 1 219 0 586 132 149 50 chr3 35121046 35121167 -192403411 - FLAM_C SINE Alu 0 133 1 29 78 0 0 chr3 35121172 35121236 -192403342 + AT_rich Low_complexity Low_complexity 1 64 0 235 319 112 9 chr3 35122023 35122139 -192402439 + MIR SINE MIR 103 230 -32 25 65 0 0 chr3 35122579 35122625 -192401953 + AT_rich Low_complexity Low_complexity 1 46 0 2323 78 0 7 chr3 35122713 35123007 -192401571 + AluSc SINE Alu 1 292 -17 2051 114 7 4 chr3 35123295 35123576 -192401002 + AluSx SINE Alu 1 282 -30 1621 147 23 80 chr3 35123661 35123960 -192400618 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 35124029 35124049 -192400529 + (CA)n Simple_repeat Simple_repeat 1 20 0 1476 154 62 0 chr3 35124080 35124352 -192400226 + AluJb SINE Alu 13 301 -11 1278 142 0 14 chr3 35124358 35124570 -192400008 + AluSg/x SINE Alu 85 293 -19 380 54 0 279 chr3 35124759 35124870 -192399708 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chr3 35128019 35128048 -192396530 + AT_rich Low_complexity Low_complexity 1 29 0 387 241 186 68 chr3 35128226 35128446 -192396132 - L2 LINE L2 -3 3310 3065 31 26 0 0 chr3 35128468 35128506 -192396072 + AT_rich Low_complexity Low_complexity 1 38 0 1523 176 3 49 chr3 35129285 35129591 -192394987 + AluJo SINE Alu 1 292 -20 2232 98 0 0 chr3 35130796 35131091 -192393487 + AluSq SINE Alu 1 295 -18 2070 108 18 0 chr3 35131643 35131921 -192392657 + AluSx SINE Alu 1 283 -29 800 97 28 23 chr3 35131932 35131952 -192392626 + A-rich Low_complexity Low_complexity 4 22 -158 2277 101 0 0 chr3 35131952 35132249 -192392329 + AluSg SINE Alu 1 297 -13 800 97 28 23 chr3 35132249 35132404 -192392174 + A-rich Low_complexity Low_complexity 22 180 0 276 91 0 0 chr3 35132404 35132448 -192392130 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 242 277 54 45 chr3 35132659 35132771 -192391807 + L1MEd LINE L1 502 614 -5505 367 312 151 9 chr3 35132912 35133130 -192391448 + L1MEd LINE L1 1008 1256 -4863 1849 236 70 34 chr3 35133173 35133800 -192390778 - L1M4 LINE L1 -1686 4460 3811 1551 189 78 22 chr3 35133811 35134171 -192390407 - MLT1D LTR MaLR -19 486 107 2091 147 0 6 chr3 35134173 35134487 -192390091 + AluSx SINE Alu 1 312 0 2298 110 0 16 chr3 35134489 35134806 -192389772 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 35135026 35135055 -192389523 + AT_rich Low_complexity Low_complexity 1 29 0 1087 76 0 0 chr3 35135627 35135758 -192388820 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 35135872 35135995 -192388583 + AT_rich Low_complexity Low_complexity 1 123 0 1884 114 51 0 chr3 35136243 35136516 -192388062 - AluSx SINE Alu -25 287 1 216 275 43 29 chr3 35136555 35136624 -192387954 + L2 LINE L2 3201 3270 -2 369 0 0 0 chr3 35137351 35137392 -192387186 + (CA)n Simple_repeat Simple_repeat 1 41 0 855 215 0 0 chr3 35137956 35138119 -192386459 - FRAM SINE Alu -13 163 1 2351 106 0 3 chr3 35139026 35139337 -192385241 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 35139649 35139672 -192384906 + AT_rich Low_complexity Low_complexity 1 23 0 2231 110 7 3 chr3 35139675 35139983 -192384595 + AluSx SINE Alu 1 309 -3 898 103 0 0 chr3 35140653 35140770 -192383808 + AluSp SINE Alu 1 117 -196 1293 169 58 4 chr3 35140770 35140995 -192383583 - AluSx SINE Alu -73 239 3 3604 264 90 51 chr3 35141013 35141537 -192383041 + HAL1 LINE L1 758 1260 -1247 2061 132 3 0 chr3 35141537 35141824 -192382754 + AluSx SINE Alu 1 288 -24 3604 264 90 51 chr3 35141824 35142583 -192381995 + HAL1 LINE L1 1260 1988 -519 1913 152 0 0 chr3 35142583 35142866 -192381712 + AluJb SINE Alu 1 283 -29 3604 264 90 51 chr3 35142866 35142888 -192381690 + HAL1 LINE L1 1988 2008 -499 1617 183 0 31 chr3 35142888 35143210 -192381368 + AluSq SINE Alu 1 312 -1 3604 264 90 51 chr3 35143210 35143587 -192380991 + HAL1 LINE L1 2008 2507 0 1398 182 3 85 chr3 35143822 35144162 -192380416 + AluJo SINE Alu 1 312 0 440 233 180 13 chr3 35144193 35144343 -192380235 + MER5B DNA MER1_type 2 176 -2 3506 201 22 77 chr3 35144538 35145563 -192379015 + LTR5 LTR ERVK 1 969 0 25 0 0 0 chr3 35146319 35146344 -192378234 + AT_rich Low_complexity Low_complexity 1 25 0 2409 92 3 0 chr3 35147962 35148267 -192376311 + AluSg SINE Alu 1 306 -4 378 0 0 0 chr3 35148528 35148570 -192376008 + (CA)n Simple_repeat Simple_repeat 1 42 0 1744 189 0 0 chr3 35149337 35149628 -192374950 + AluJo SINE Alu 13 303 -9 2340 69 3 13 chr3 35150174 35150479 -192374099 - AluSq SINE Alu -11 302 1 195 42 0 0 chr3 35150480 35150504 -192374074 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2218 108 7 0 chr3 35150734 35151041 -192373537 - AluSx SINE Alu -3 309 1 325 272 73 37 chr3 35151147 35151283 -192373295 + L2 LINE L2 3172 3312 -1 230 219 67 84 chr3 35151540 35151659 -192372919 + MLT1J LTR MaLR 11 127 -384 329 258 0 21 chr3 35152131 35152228 -192372350 + HERVL32 LTR ERVL 3323 3417 -1 2482 80 3 3 chr3 35152228 35152540 -192372038 + AluSp SINE Alu 1 312 -1 497 228 60 42 chr3 35152597 35152812 -192371766 + LTR32 LTR ERVL 87 305 -166 445 203 39 39 chr3 35153146 35153274 -192371304 + MIR SINE MIR 91 218 -44 2163 130 0 3 chr3 35153416 35153723 -192370855 + AluSq SINE Alu 1 306 -7 536 179 38 0 chr3 35153723 35153829 -192370749 - MLT1D LTR MaLR -394 111 2 894 264 108 12 chr3 35153832 35154139 -192370439 - L1MEc LINE L1 -2353 3862 3503 1325 233 36 3 chr3 35154139 35154440 -192370138 - AluJo SINE Alu -1 311 1 894 264 108 12 chr3 35154440 35154548 -192370030 - L1MEc LINE L1 -2712 3503 3407 1894 92 70 35 chr3 35154555 35154839 -192369739 - AluSx SINE Alu -17 295 2 21 0 0 0 chr3 35154909 35154930 -192369648 + AT_rich Low_complexity Low_complexity 1 21 0 1338 143 123 4 chr3 35155091 35155335 -192369243 - AluSx SINE Alu -9 303 31 1135 206 38 15 chr3 35155345 35155633 -192368945 - MER61B LTR ERV1 -29 396 1 2312 100 7 0 chr3 35155674 35155984 -192368594 - AluSx SINE Alu 0 312 1 1502 202 104 116 chr3 35155984 35156919 -192367659 - L1MEc LINE L1 -2800 3415 2492 2770 278 65 16 chr3 35156952 35158203 -192366375 - L1MEc LINE L1 -5004 1392 80 381 136 25 37 chr3 35158207 35158288 -192366290 + L1MA9 LINE L1 6025 6104 -208 2371 86 0 43 chr3 35158290 35158616 -192365962 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 35158625 35158647 -192365931 + AT_rich Low_complexity Low_complexity 1 22 0 256 274 5 79 chr3 35158652 35158867 -192365711 + L1MA9 LINE L1 6112 6310 -2 1080 148 13 93 chr3 35159058 35159143 -192365435 + L1MA9 LINE L1 6027 6117 -195 1544 199 0 43 chr3 35159143 35159465 -192365113 + AluSx SINE Alu 5 312 0 261 0 0 0 chr3 35159467 35159496 -192365082 + (TA)n Simple_repeat Simple_repeat 1 29 0 1080 148 13 93 chr3 35159496 35159717 -192364861 + L1MA9 LINE L1 6118 6311 -1 2181 115 3 16 chr3 35160375 35160689 -192363889 - AluSg SINE Alu 0 310 1 221 203 0 0 chr3 35160715 35160772 -192363806 + MIR SINE MIR 104 144 -64 207 0 0 0 chr3 35161144 35161167 -192363411 + (T)n Simple_repeat Simple_repeat 1 23 0 2319 110 0 16 chr3 35161433 35161750 -192362828 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 35161970 35161999 -192362579 + AT_rich Low_complexity Low_complexity 1 29 0 1099 76 0 0 chr3 35162572 35162703 -192361875 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 35162817 35162940 -192361638 + AT_rich Low_complexity Low_complexity 1 123 0 868 240 5 10 chr3 35163425 35163629 -192360949 - MER82 DNA MER2_type 0 653 451 218 315 0 0 chr3 35163718 35163772 -192360806 + L2 LINE L2 3214 3267 -5 351 223 62 15 chr3 35163925 35164055 -192360523 + L1MB5 LINE L1 6030 6165 -9 2340 161 9 78 chr3 35164956 35165535 -192359043 + L1MD3 LINE L1 7443 7981 -14 2129 98 7 0 chr3 35166938 35167223 -192357355 + AluSp SINE Alu 1 287 -26 724 172 9 9 chr3 35167634 35167750 -192356828 + FLAM_C SINE Alu 1 116 -17 29 0 0 0 chr3 35167751 35167780 -192356798 + AT_rich Low_complexity Low_complexity 1 29 0 2200 115 0 0 chr3 35167789 35168085 -192356493 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr3 35168511 35168547 -192356031 + AT_rich Low_complexity Low_complexity 1 36 0 443 66 0 0 chr3 35169176 35169237 -192355341 - Alu SINE Alu -9 303 243 1578 145 85 0 chr3 35169237 35169485 -192355093 + AluSx SINE Alu 37 305 -7 4009 188 90 19 chr3 35170732 35171814 -192352764 - Charlie1 DNA MER1_type -19 2742 1585 25 31 0 0 chr3 35171878 35171910 -192352668 + AT_rich Low_complexity Low_complexity 1 32 0 1883 131 6 32 chr3 35172314 35172627 -192351951 + AluSx SINE Alu 1 305 -7 303 214 0 0 chr3 35173573 35173643 -192350935 + (TA)n Simple_repeat Simple_repeat 1 70 0 1909 145 10 7 chr3 35173644 35173941 -192350637 - AluSx SINE Alu -14 298 1 252 0 0 0 chr3 35174814 35174842 -192349736 + (CA)n Simple_repeat Simple_repeat 1 28 0 1010 136 0 13 chr3 35174854 35175037 -192349541 + AluSg/x SINE Alu 134 312 0 558 207 0 0 chr3 35175120 35175236 -192349342 + FLAM_C SINE Alu 26 141 -2 1718 172 7 10 chr3 35175283 35175574 -192349004 + AluSx SINE Alu 1 290 -22 318 294 75 38 chr3 35175759 35175919 -192348659 + L1ME LINE L1 5497 5662 -459 982 81 25 69 chr3 35176613 35176752 -192347826 + AluSq SINE Alu 1 134 -179 2303 74 3 19 chr3 35176752 35177063 -192347515 + AluY SINE Alu 1 306 -5 982 81 25 69 chr3 35177063 35177083 -192347495 + AluSq SINE Alu 134 153 -160 579 74 0 0 chr3 35177083 35177164 -192347414 + AluSp/q SINE Alu 220 300 -13 853 152 59 150 chr3 35177201 35177529 -192347049 + MER61B LTR ERV1 1 396 -29 1584 121 73 4 chr3 35177539 35177787 -192346791 + AluSx SINE Alu 31 295 -17 1919 98 47 0 chr3 35178032 35178309 -192346269 + AluSg SINE Alu 1 290 -20 1251 172 46 23 chr3 35178354 35178643 -192345935 + MER61B LTR ERV1 1 396 -28 1752 110 38 8 chr3 35178652 35178916 -192345662 + AluSx SINE Alu 31 302 -10 180 0 0 0 chr3 35179081 35179101 -192345477 + (A)n Simple_repeat Simple_repeat 1 20 0 2289 82 20 0 chr3 35179285 35179589 -192344989 + AluY SINE Alu 1 310 -1 2474 50 7 3 chr3 35179776 35180079 -192344499 + AluY SINE Alu 1 304 -7 1822 123 0 89 chr3 35180152 35180476 -192344102 + AluSx SINE Alu 1 295 -17 279 273 62 45 chr3 35180621 35180797 -192343781 - MIR SINE MIR -76 186 8 1529 101 0 24 chr3 35181617 35181825 -192342753 - AluSx SINE Alu -99 213 11 628 225 36 0 chr3 35182035 35182173 -192342405 + FAM SINE Alu 1 143 -42 559 289 62 54 chr3 35182189 35182431 -192342147 + MIR SINE MIR 11 254 -8 2020 142 3 0 chr3 35182436 35182732 -192341846 + AluSx SINE Alu 5 301 -11 1637 153 97 43 chr3 35182760 35183153 -192341425 - MER21B LTR ERV1 -1 862 449 1761 89 13 0 chr3 35183153 35183377 -192341201 + AluSp SINE Alu 74 300 -13 234 208 0 0 chr3 35184196 35184244 -192340334 - MER41A LTR ERV1 -111 443 396 2069 103 0 4 chr3 35184268 35184549 -192340029 + AluSc SINE Alu 1 280 -29 240 35 0 0 chr3 35184552 35184581 -192339997 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 408 247 93 6 chr3 35184699 35184861 -192339717 + MER112 DNA MER1_type 74 249 -11 1666 112 127 12 chr3 35185020 35185279 -192339299 - AluSx SINE Alu -23 289 1 678 148 28 0 chr3 35185923 35186031 -192338547 + AluSq/x SINE Alu 8 118 -194 402 113 0 0 chr3 35186033 35186086 -192338492 + AluS SINE Alu 233 285 -26 31 26 0 0 chr3 35186093 35186131 -192338447 + AT_rich Low_complexity Low_complexity 1 38 0 2236 112 0 0 chr3 35186405 35186701 -192337877 + AluSx SINE Alu 1 296 -16 896 208 0 29 chr3 35186755 35186928 -192337650 + FAM SINE Alu 1 168 -7 1825 136 47 4 chr3 35187056 35187335 -192337243 + AluJb SINE Alu 14 304 -8 1685 109 55 4 chr3 35188060 35188298 -192336280 + AluSg SINE Alu 25 274 -36 1912 108 68 7 chr3 35188446 35188725 -192335853 + AluSx SINE Alu 1 296 -16 316 354 78 19 chr3 35188897 35189103 -192335475 - MIR SINE MIR -38 224 7 1570 138 214 11 chr3 35190120 35190476 -192334102 + MSTA LTR MaLR 1 428 0 212 320 90 30 chr3 35190486 35190586 -192333992 - L2 LINE L2 0 3313 3208 188 289 124 25 chr3 35190968 35191089 -192333489 - MIR SINE MIR -108 154 22 2037 87 17 37 chr3 35191223 35191521 -192333057 - AluSx SINE Alu -20 292 1 2307 75 20 0 chr3 35191842 35192137 -192332441 + AluSx SINE Alu 1 301 -11 1670 132 6 71 chr3 35192312 35192638 -192331940 + AluSx SINE Alu 1 305 -7 1770 162 7 16 chr3 35192743 35193046 -192331532 + AluJb SINE Alu 1 300 -12 1753 164 18 4 chr3 35193858 35194138 -192330440 - AluJb SINE Alu -28 284 1 297 283 152 0 chr3 35194504 35194603 -192329975 + L2 LINE L2 3158 3271 -1 2117 116 10 0 chr3 35195467 35195759 -192328819 + AluSx SINE Alu 5 299 -13 2238 84 0 3 chr3 35196098 35196385 -192328193 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr3 35197431 35197458 -192327120 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 35197809 35197837 -192326741 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 35198164 35198186 -192326392 + GC_rich Low_complexity Low_complexity 1 22 0 2261 92 7 0 chr3 35198637 35198942 -192325636 - AluSx SINE Alu -5 307 1 301 298 145 0 chr3 35198973 35199104 -192325474 + MIR SINE MIR 113 262 0 2011 119 0 3 chr3 35199144 35199454 -192325124 + AluSx SINE Alu 1 309 -3 255 234 94 0 chr3 35200324 35200388 -192324190 - MIR SINE MIR -86 176 107 2211 105 0 3 chr3 35200436 35200742 -192323836 - AluSx SINE Alu -7 305 1 291 246 60 93 chr3 35200742 35200784 -192323794 + L2 LINE L2 3143 3185 -128 240 35 0 0 chr3 35200784 35200813 -192323765 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 246 60 93 chr3 35200813 35200947 -192323631 + L2 LINE L2 3185 3313 0 444 148 0 0 chr3 35201449 35201510 -192323068 + AluS SINE Alu 2 62 -256 1181 94 29 12 chr3 35201743 35202030 -192322548 - MER4B LTR ERV1 0 610 261 663 121 0 10 chr3 35202030 35202129 -192322449 - MER4A LTR ERV1 -566 98 1 2183 62 0 10 chr3 35202201 35202515 -192322063 + AluY SINE Alu 1 311 0 344 275 143 62 chr3 35202530 35202803 -192321775 + L1MC4a LINE L1 5681 5975 -1833 1501 161 36 7 chr3 35202875 35203155 -192321423 - AluJb SINE Alu -24 288 1 1025 156 24 0 chr3 35203155 35203322 -192321256 - AluSg/x SINE Alu -11 299 129 1014 133 12 0 chr3 35203322 35203488 -192321090 - AluSc SINE Alu 0 309 142 1942 121 7 3 chr3 35203499 35203789 -192320789 - AluSx SINE Alu -21 291 1 447 172 26 35 chr3 35203793 35203909 -192320669 + L1ME1 LINE L1 6048 6162 -4 2078 107 52 50 chr3 35204061 35204424 -192320154 - THE1B LTR MaLR 0 364 1 1662 148 16 19 chr3 35204570 35204880 -192319698 + AluSx SINE Alu 3 311 -1 257 290 14 0 chr3 35205663 35205732 -192318846 + MIR SINE MIR 81 150 -112 642 241 99 59 chr3 35205733 35205924 -192318654 + MER46C DNA MER2_type 1 212 -126 2039 109 3 0 chr3 35205924 35206208 -192318370 + AluSg1 SINE Alu 1 285 -24 642 241 99 59 chr3 35206208 35206340 -192318238 + MER46C DNA MER2_type 212 337 -1 468 0 0 0 chr3 35206848 35206900 -192317678 + (CA)n Simple_repeat Simple_repeat 1 52 0 1843 113 7 41 chr3 35207340 35207671 -192316907 - AluSp SINE Alu 0 321 1 376 250 0 25 chr3 35207733 35207813 -192316765 + MER21B LTR ERV1 12 89 -774 2306 216 117 74 chr3 35207836 35208007 -192316571 + MER21B LTR ERV1 19 181 -682 2140 104 0 22 chr3 35208007 35208324 -192316254 - AluSx SINE Alu 0 312 3 2306 216 117 74 chr3 35208324 35208959 -192315619 + MER21B LTR ERV1 181 859 -4 2119 123 0 0 chr3 35209505 35209806 -192314772 + AluSq SINE Alu 1 301 -12 1162 213 18 5 chr3 35210252 35210473 -192314105 + MER58A DNA MER1_type 1 224 0 1089 199 5 0 chr3 35210510 35210701 -192313877 + AluSx SINE Alu 1 192 -120 801 149 0 14 chr3 35211687 35211828 -192312750 + AluSc SINE Alu 152 290 -19 2182 95 3 13 chr3 35212117 35212421 -192312157 - AluSp SINE Alu -12 301 1 231 308 140 0 chr3 35212816 35212923 -192311655 + MIR SINE MIR 141 262 0 313 195 212 18 chr3 35213010 35213123 -192311455 + L2 LINE L2 3179 3313 0 1463 98 0 0 chr3 35213215 35213418 -192311160 - AluSg/x SINE Alu -9 300 98 1113 173 9 19 chr3 35213522 35213736 -192310842 - AluJo SINE Alu -100 212 1 376 203 391 22 chr3 35213737 35213875 -192310703 - MIR SINE MIR -1 261 73 2109 108 3 13 chr3 35214118 35214433 -192310145 + AluSq SINE Alu 1 312 -1 1990 129 3 7 chr3 35214578 35214880 -192309698 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr3 35214896 35214917 -192309661 + AT_rich Low_complexity Low_complexity 1 21 0 1940 133 0 23 chr3 35214948 35215118 -192309460 - AluSx SINE Alu -10 302 141 1823 110 88 0 chr3 35215118 35215391 -192309187 - AluSg SINE Alu -11 299 3 1940 133 0 23 chr3 35215391 35215529 -192309049 - AluSx SINE Alu -171 141 1 295 318 11 0 chr3 35215601 35215689 -192308889 + MARNA DNA Mariner 261 349 -237 226 237 211 0 chr3 35215715 35215791 -192308787 + L2 LINE L2 3222 3313 0 339 224 129 0 chr3 35215800 35215885 -192308693 + MARNA DNA Mariner 418 513 -73 865 200 205 0 chr3 35215934 35216119 -192308459 - MER45C DNA AcHobo 0 953 731 822 221 22 22 chr3 35216228 35216409 -192308169 - MER45C DNA AcHobo -724 229 49 284 296 38 57 chr3 35216798 35216957 -192307621 - L2 LINE L2 -534 2780 2625 764 137 5 8 chr3 35217097 35217313 -192307265 + AluSx SINE Alu 2 302 -10 1853 121 7 3 chr3 35217555 35217859 -192306719 + AluSx SINE Alu 1 305 0 2115 121 3 0 chr3 35217951 35218258 -192306320 + AluSx SINE Alu 1 308 -4 202 226 57 0 chr3 35218535 35218588 -192305990 + MER5A DNA MER1_type 26 81 -108 662 234 91 29 chr3 35219833 35220249 -192304329 + LTR16C LTR ERVL 1 483 -8 1076 268 91 56 chr3 35220853 35220986 -192303592 + LTR16A LTR ERVL 26 153 -297 2099 103 3 3 chr3 35220986 35221277 -192303301 + AluSx SINE Alu 1 291 -21 1076 268 91 56 chr3 35221277 35221539 -192303039 + LTR16A LTR ERVL 153 435 -15 776 153 0 0 chr3 35221583 35221694 -192302884 + AluJo/FLAM SINE Alu 4 114 -188 2072 117 0 0 chr3 35221694 35222015 -192302563 - AluSx SINE Alu 0 321 1 1738 184 48 12 chr3 35222017 35222348 -192302230 + MLT1A1 LTR MaLR 23 365 0 508 295 116 52 chr3 35222349 35222736 -192301842 - MLT1J2 LTR MaLR -10 440 29 2281 87 0 3 chr3 35224137 35224436 -192300142 + AluSq SINE Alu 1 298 -15 549 222 8 0 chr3 35224618 35224735 -192299843 - L1MB7 LINE L1 -19 6165 6048 1121 158 0 0 chr3 35224735 35224899 -192299679 + U1 snRNA snRNA 1 164 -1 988 194 1 41 chr3 35224927 35225056 -192299522 - L1MB7 LINE L1 -123 6055 5940 2095 102 0 0 chr3 35225056 35225367 -192299211 - AluSq SINE Alu 0 311 1 988 194 1 41 chr3 35225367 35225484 -192299094 - L1MB7 LINE L1 -238 5940 5820 695 86 0 0 chr3 35225484 35225577 -192299001 - AluSg/x SINE Alu -9 300 208 921 201 80 17 chr3 35225585 35225854 -192298724 + L1M4 LINE L1 4174 4464 -1682 1550 170 47 4 chr3 35225854 35226130 -192298448 + AluJo SINE Alu 3 290 -22 921 201 80 17 chr3 35226130 35226148 -192298430 + L1M4 LINE L1 4464 4479 -1667 661 184 9 0 chr3 35226148 35226257 -192298321 + AluJo SINE Alu 26 135 -177 2237 113 0 0 chr3 35226258 35226569 -192298009 + AluSx SINE Alu 1 311 -1 721 170 0 0 chr3 35226860 35226972 -192297606 - AluSq/x SINE Alu -199 113 2 1848 144 6 6 chr3 35227067 35227199 -192297379 + AluSx SINE Alu 1 132 -180 1927 113 0 0 chr3 35227199 35227464 -192297114 + AluSx SINE Alu 27 291 -21 1848 144 6 6 chr3 35227464 35227643 -192296935 + AluSx SINE Alu 131 312 0 970 156 24 0 chr3 35227643 35227810 -192296768 + AluSg/x SINE Alu 131 301 -11 1520 154 33 7 chr3 35227819 35228092 -192296486 + AluJb SINE Alu 9 288 -24 414 55 0 0 chr3 35228453 35228534 -192296044 - Alu SINE Alu 0 311 231 369 302 0 0 chr3 35278534 35278630 -192245948 - L2 LINE L2 -368 2945 2850 1960 89 0 0 chr3 35278637 35278873 -192245705 + AluSx SINE Alu 7 242 -70 221 0 0 33 chr3 35278887 35278917 -192245661 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 35278954 35278977 -192245601 + AT_rich Low_complexity Low_complexity 1 23 0 322 296 112 35 chr3 35279102 35279271 -192245307 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 35279279 35279333 -192245245 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 35279430 35279468 -192245110 + (TG)n Simple_repeat Simple_repeat 1 38 0 1883 122 30 0 chr3 35279468 35279739 -192244839 - AluSx SINE Alu -33 279 1 545 145 0 0 chr3 35279863 35279946 -192244632 + AluJ/FLAM SINE Alu 9 91 -221 1633 177 0 40 chr3 35280047 35280324 -192244254 - AluJo SINE Alu -46 266 1 1303 210 41 34 chr3 35280354 35280617 -192243961 + L1M4 LINE L1 2911 3180 -2966 2034 121 48 38 chr3 35280617 35280988 -192243590 + THE1C LTR MaLR 1 375 0 1303 210 41 34 chr3 35280988 35281166 -192243412 + L1M4 LINE L1 3180 3355 -2791 944 150 20 0 chr3 35281272 35281419 -192243159 + AluSg/x SINE Alu 131 280 -30 180 204 82 0 chr3 35282057 35282106 -192242472 + L2 LINE L2 3219 3271 -1 2104 225 54 33 chr3 35282122 35282637 -192241941 - MLT1E LTR MaLR -11 582 57 306 254 51 43 chr3 35282850 35282988 -192241590 - L2 LINE L2 -200 3072 2934 245 339 46 23 chr3 35283056 35283230 -192241348 + MIR3 SINE MIR 30 207 -1 2112 145 0 0 chr3 35283982 35284292 -192240286 - AluSx SINE Alu -2 310 1 330 87 0 0 chr3 35284843 35284889 -192239689 + (TG)n Simple_repeat Simple_repeat 2 47 0 2059 122 14 0 chr3 35285205 35285513 -192239065 - AluSx SINE Alu 0 312 1 1932 112 76 0 chr3 35285680 35285957 -192238621 - AluSp SINE Alu -15 298 1 2036 165 8 61 chr3 35285992 35286387 -192238191 + MLT1B LTR MaLR 17 390 0 496 170 11 11 chr3 35286433 35286527 -192238051 + MER74A LTR ERVL 30 123 -435 44 35 0 0 chr3 35286700 35286758 -192237820 + AT_rich Low_complexity Low_complexity 1 58 0 2266 128 0 3 chr3 35286878 35287191 -192237387 - AluSx SINE Alu 0 312 1 653 130 20 0 chr3 35288052 35288152 -192236426 + MSTD LTR MaLR 1 102 -294 1467 193 0 63 chr3 35288158 35288489 -192236089 - AluJo SINE Alu 0 312 1 39 60 0 0 chr3 35288490 35288557 -192236021 + AT_rich Low_complexity Low_complexity 1 67 0 848 158 0 0 chr3 35288559 35288686 -192235892 - FLAM_C SINE Alu -16 127 1 731 232 105 11 chr3 35288686 35288876 -192235702 + MSTD LTR MaLR 122 329 -67 1842 99 4 16 chr3 35288880 35289123 -192235455 - AluSx SINE Alu -17 295 56 1325 69 6 0 chr3 35289586 35289759 -192234819 + L1PA11 LINE L1 5998 6171 -3 2084 124 13 22 chr3 35290340 35290655 -192233923 + AluSq SINE Alu 1 312 -1 384 349 59 21 chr3 35290818 35291056 -192233522 - MIR SINE MIR -3 259 13 516 172 123 49 chr3 35291209 35291323 -192233255 + MER44D DNA MER2_type 5 109 -2382 2305 100 7 0 chr3 35291323 35291623 -192232955 - AluSp SINE Alu -11 302 1 350 89 0 0 chr3 35291632 35291677 -192232901 - AluSc SINE Alu -48 251 207 1988 148 3 0 chr3 35291951 35292242 -192232336 - AluSx SINE Alu -17 295 4 1470 263 121 28 chr3 35293633 35294170 -192230408 + MLT1K LTR MaLR 2 588 0 307 211 0 0 chr3 35294423 35294475 -192230103 + MER44D DNA MER2_type 558 609 0 1749 163 0 30 chr3 35294627 35294928 -192229650 + AluJb SINE Alu 1 292 -20 1351 154 133 39 chr3 35295218 35295503 -192229075 - AluJo SINE Alu 0 312 1 626 122 0 0 chr3 35296511 35296601 -192227977 - AluSg/x SINE Alu -56 254 165 490 228 26 47 chr3 35296712 35296905 -192227673 + L1MC5 LINE L1 7756 7944 -17 2375 36 39 42 chr3 35296996 35297304 -192227274 - AluY SINE Alu -4 307 1 789 210 58 76 chr3 35298490 35298612 -192225966 + ORSL DNA AcHobo 1 124 -151 2260 97 0 0 chr3 35298612 35298910 -192225668 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 35298910 35298933 -192225645 + (TA)n Simple_repeat Simple_repeat 1 23 0 789 210 58 76 chr3 35298933 35299085 -192225493 + ORSL DNA AcHobo 122 271 -4 899 128 0 0 chr3 35299203 35299328 -192225250 - AluJb SINE Alu -181 131 7 1551 105 5 5 chr3 35299512 35299721 -192224857 + AluSx SINE Alu 1 209 -103 707 183 108 0 chr3 35299721 35299841 -192224737 + AluJo/FRAM SINE Alu 148 280 -32 3027 236 53 30 chr3 35300004 35300846 -192223732 + L1ME2 LINE L1 5293 6154 -10 2629 216 104 64 chr3 35300861 35301886 -192222692 + L1MC5 LINE L1 6607 7678 -283 792 122 9 0 chr3 35302081 35302188 -192222390 + AluSx SINE Alu 194 301 -11 590 336 40 5 chr3 35302590 35302813 -192221765 + MIR SINE MIR 1 231 -31 1659 151 88 18 chr3 35302894 35302996 -192221582 - AluJb SINE Alu -7 305 212 2818 187 57 88 chr3 35302996 35303535 -192221043 + LTR8A LTR ERV1 1 555 -172 2216 110 3 0 chr3 35303535 35303827 -192220751 + AluSq SINE Alu 1 293 -20 2818 187 57 88 chr3 35303827 35303856 -192220722 + LTR8A LTR ERV1 555 583 -144 1771 105 93 0 chr3 35303856 35304152 -192220426 + AluSg SINE Alu 1 320 0 2818 187 57 88 chr3 35304152 35304331 -192220247 + LTR8A LTR ERV1 583 727 0 1659 151 88 18 chr3 35304331 35304513 -192220065 - AluJb SINE Alu -100 212 1 253 300 0 0 chr3 35304573 35304643 -192219935 + MER117 DNA MER1_type 78 147 -50 198 286 0 48 chr3 35305019 35305082 -192219496 + L2 LINE L2 3209 3268 -4 480 242 128 40 chr3 35305181 35305330 -192219248 + MIR SINE MIR 47 208 -54 268 246 74 66 chr3 35305550 35305672 -192218906 + MLT1L LTR MaLR 145 267 -348 320 86 17 86 chr3 35305778 35305820 -192218758 + AluJo SINE Alu 96 135 -167 2309 102 3 0 chr3 35305820 35306114 -192218464 + AluSq SINE Alu 3 297 -16 320 86 17 86 chr3 35306114 35306129 -192218449 + AluJo SINE Alu 135 149 -153 383 119 0 0 chr3 35306132 35306199 -192218379 - L1MEc LINE L1 -4282 2114 2048 1240 123 33 19 chr3 35306200 35306516 -192218062 + MLT2A2 LTR ERVL 234 453 0 694 200 36 31 chr3 35306516 35306776 -192217802 - L1MEc LINE L1 -4158 2238 1893 4983 254 57 37 chr3 35306843 35307257 -192217321 - L1MEc LINE L1 -4494 1902 1498 479 139 13 0 chr3 35307257 35307336 -192217242 - MADE1 DNA Mariner 0 80 1 4983 254 57 37 chr3 35307336 35308325 -192216253 - L1MEc LINE L1 -4898 1498 530 1153 184 58 0 chr3 35308325 35308532 -192216046 + MER20 DNA MER1_type 1 219 0 4983 254 57 37 chr3 35308532 35308873 -192215705 - L1MEc LINE L1 -5866 530 197 401 75 0 15 chr3 35308873 35308940 -192215638 + (TA)n Simple_repeat Simple_repeat 2 67 0 4983 254 57 37 chr3 35308940 35309032 -192215546 - L1MEc LINE L1 -6199 197 108 2127 122 0 20 chr3 35309032 35309336 -192215242 - AluSx SINE Alu -14 298 1 4983 254 57 37 chr3 35309336 35309356 -192215222 - L1MEc LINE L1 -6288 108 7 297 207 0 37 chr3 35309447 35309529 -192215049 + Charlie8 DNA MER1_type 82 160 -2257 608 249 121 77 chr3 35309618 35309891 -192214687 + LTR33 LTR ERVL 1 285 -236 1497 182 70 40 chr3 35310766 35311068 -192213510 + AluJo SINE Alu 1 311 -1 192 77 0 0 chr3 35311071 35311097 -192213481 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1276 102 6 6 chr3 35311200 35311376 -192213202 - AluSg SINE Alu -134 176 1 2279 96 0 23 chr3 35311401 35311702 -192212876 - AluSg SINE Alu -16 294 1 1410 141 8 25 chr3 35311760 35312002 -192212576 - MER39B LTR ERV1 -3 650 413 1945 116 3 21 chr3 35312003 35312288 -192212290 + AluSx SINE Alu 1 280 -32 218 200 40 0 chr3 35312307 35312357 -192212221 + A-rich Low_complexity Low_complexity 5 56 0 2168 76 152 33 chr3 35312723 35312760 -192211818 + MER39B LTR ERV1 12 43 -610 222 37 0 0 chr3 35312760 35312787 -192211791 + (TC)n Simple_repeat Simple_repeat 1 27 0 2168 76 152 33 chr3 35312787 35313117 -192211461 + MER39B LTR ERV1 43 423 -230 1074 99 7 0 chr3 35313117 35313259 -192211319 - AluSp/q SINE Alu -15 298 156 265 162 14 14 chr3 35315114 35315188 -192209390 + CT-rich Low_complexity Low_complexity 3 76 0 2258 105 3 7 chr3 35315264 35315559 -192209019 + AluSx SINE Alu 1 294 -18 1354 215 33 10 chr3 35315677 35315979 -192208599 + AluJo SINE Alu 3 311 -1 2292 98 0 19 chr3 35315979 35316294 -192208284 + AluY SINE Alu 1 309 -2 2181 84 40 10 chr3 35316374 35316671 -192207907 + AluY SINE Alu 1 306 -5 1077 168 31 75 chr3 35317754 35317886 -192206692 + MER20 DNA MER1_type 1 120 -99 1667 232 118 47 chr3 35317886 35318309 -192206269 - LTR27 LTR ERV1 -1 635 157 1995 152 7 0 chr3 35318309 35318605 -192205973 + AluSp SINE Alu 1 298 -15 1667 232 118 47 chr3 35318605 35318772 -192205806 - LTR27 LTR ERV1 -479 157 3 1077 168 31 75 chr3 35318772 35318865 -192205713 + MER20 DNA MER1_type 120 216 -3 464 258 10 93 chr3 35319528 35319722 -192204856 - MER5B DNA MER1_type 0 178 1 877 203 7 0 chr3 35319732 35319885 -192204693 + FRAM SINE Alu 4 157 -19 2382 87 7 0 chr3 35320451 35320761 -192203817 - AluSp SINE Alu -1 312 1 373 300 30 0 chr3 35321885 35321985 -192202593 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 35321985 35322008 -192202570 + AT_rich Low_complexity Low_complexity 1 23 0 1123 142 0 0 chr3 35322009 35322171 -192202407 - AluSg/x SINE Alu -22 290 129 201 98 244 0 chr3 35322175 35322216 -192202362 + MIR SINE MIR 93 143 -119 833 170 7 15 chr3 35322223 35322358 -192202220 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 35322730 35322814 -192201764 + LTR16A1 LTR ERVL 346 431 -26 365 224 0 0 chr3 35322814 35322881 -192201697 + MIR SINE MIR 186 252 -10 2156 110 0 7 chr3 35323373 35323663 -192200915 + AluSx SINE Alu 1 288 -24 212 405 8 16 chr3 35323884 35324005 -192200573 + L2 LINE L2 3127 3246 -26 754 175 0 8 chr3 35324250 35324370 -192200208 + FLAM_A SINE Alu 16 134 -8 229 283 61 50 chr3 35324616 35324796 -192199782 + MER3 DNA MER1_type 28 209 0 * 919 230 10 0 chr3 35324796 35324841 -192199737 - MER3 DNA MER1_type -160 49 3 2162 100 7 23 chr3 35324943 35325244 -192199334 + AluSx SINE Alu 1 296 -16 1596 182 6 43 chr3 35325716 35326045 -192198533 - MLT1A1 LTR MaLR -48 317 1 242 285 122 87 chr3 35326046 35326218 -192198360 + L2 LINE L2 3136 3313 0 2322 96 0 0 chr3 35326354 35326647 -192197931 - AluSx SINE Alu -19 293 1 1487 248 14 6 chr3 35326708 35327059 -192197519 + LTR16A LTR ERVL 92 445 -5 2372 102 0 3 chr3 35328131 35328444 -192196134 + AluSq SINE Alu 1 312 -1 1924 115 0 77 chr3 35328470 35328782 -192195796 + AluSx SINE Alu 1 288 -24 1403 141 31 39 chr3 35329102 35329177 -192195401 - L1MC2 LINE L1 -2 6342 6268 2331 98 0 10 chr3 35329177 35329483 -192195095 + AluSx SINE Alu 1 303 -9 1403 141 31 39 chr3 35329483 35329662 -192194916 - L1MC2 LINE L1 -76 6268 6090 1062 213 142 43 chr3 35329770 35329901 -192194677 - L1ME2 LINE L1 -132 6032 5915 2137 125 0 0 chr3 35329901 35330190 -192194388 - AluSg SINE Alu -21 289 1 1062 213 142 43 chr3 35330190 35330410 -192194168 - L1ME2 LINE L1 -249 5915 5646 1370 168 111 68 chr3 35330434 35330858 -192193720 + LTR7 LTR ERV1 1 442 -8 2290 189 42 43 chr3 35330866 35331727 -192192851 + HERVH LTR ERV1 1 1182 -6531 1457 157 4 25 chr3 35331725 35331999 -192192579 + HERVH LTR ERV1 2728 2995 -4718 * 7216 128 5 8 chr3 35331978 35333696 -192190882 + HERVH LTR ERV1 3140 5286 -1805 3077 81 7 11 chr3 35333699 35334132 -192190446 + HERVH LTR ERV1 7283 7713 0 1222 171 92 123 chr3 35334132 35334588 -192189990 + LTR7 LTR ERV1 1 442 -8 1699 175 3 14 chr3 35334589 35334875 -192189703 - AluJo SINE Alu -29 283 1 915 211 26 5 chr3 35334875 35335065 -192189513 - L1ME2 LINE L1 -507 5657 5464 2334 109 0 0 chr3 35335111 35335415 -192189163 + AluSg1 SINE Alu 1 304 -5 3287 151 9 7 chr3 35335623 35336179 -192188399 - L1P LINE L1 -1174 4972 4416 226 293 38 38 chr3 35336298 35336404 -192188174 - MIR SINE MIR 0 262 157 195 294 0 0 chr3 35336941 35336992 -192187586 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 35337031 35337058 -192187520 + (TAG)n Simple_repeat Simple_repeat 3 29 0 300 96 19 19 chr3 35337246 35337298 -192187280 - MIR SINE MIR -121 141 90 616 308 13 36 chr3 35338039 35338263 -192186315 + MIR SINE MIR 18 236 -26 1677 110 0 45 chr3 35339835 35340080 -192184498 + AluSg SINE Alu 1 234 -76 1315 148 0 10 chr3 35340182 35340384 -192184194 + AluSg/x SINE Alu 99 298 -14 553 220 126 5 chr3 35340386 35340577 -192184001 + L1ME1 LINE L1 2257 2470 -3676 443 219 19 0 chr3 35340585 35340690 -192183888 + L1ME1 LINE L1 3825 3931 -2215 225 164 0 90 chr3 35341193 35341220 -192183358 - L1ME4a LINE L1 -1 6120 6092 2187 122 0 3 chr3 35341220 35341531 -192183047 + AluSx SINE Alu 1 310 -2 225 164 0 90 chr3 35341531 35341570 -192183008 - L1ME4a LINE L1 -29 6092 6060 3127 193 57 147 chr3 35341731 35342397 -192182181 + L1ME1 LINE L1 3912 4636 -1530 1378 206 28 28 chr3 35342397 35342684 -192181894 + AluJo SINE Alu 6 292 -20 3127 193 57 147 chr3 35342684 35343462 -192181116 + L1ME1 LINE L1 4636 5483 -683 2398 73 0 25 chr3 35343462 35343778 -192180800 + AluY SINE Alu 1 308 -3 3127 193 57 147 chr3 35343778 35344045 -192180533 + L1ME1 LINE L1 5483 5655 -511 2015 134 13 0 chr3 35344045 35344351 -192180227 + AluSx SINE Alu 1 310 -2 3127 193 57 147 chr3 35344351 35344697 -192179881 + L1ME1 LINE L1 5655 6031 -135 1558 152 3 87 chr3 35345331 35345667 -192178911 + AluJo SINE Alu 1 310 0 1276 187 0 123 chr3 35346127 35346332 -192178246 - AluSx SINE Alu -10 302 154 1679 127 4 4 chr3 35346332 35346569 -192178009 - AluSg SINE Alu -13 297 61 1276 187 0 123 chr3 35346569 35346705 -192177873 - AluSx SINE Alu -158 154 3 21 36 0 0 chr3 35347352 35347380 -192177198 + AT_rich Low_complexity Low_complexity 1 28 0 290 247 12 12 chr3 35349004 35349085 -192175493 - L2 LINE L2 -35 3278 3198 21 36 0 0 chr3 35349225 35349253 -192175325 + AT_rich Low_complexity Low_complexity 1 28 0 433 145 14 0 chr3 35349481 35349550 -192175028 - AluJ/FRAM SINE Alu -11 301 232 453 175 0 0 chr3 35349658 35349721 -192174857 - AluJ/FLAM SINE Alu -247 65 3 25 51 0 0 chr3 35349726 35349765 -192174813 + AT_rich Low_complexity Low_complexity 1 39 0 2293 111 0 0 chr3 35350703 35351000 -192173578 - AluSx SINE Alu -15 297 1 1398 165 173 8 chr3 35351073 35351321 -192173257 - AluSg SINE Alu -11 289 1 1669 179 0 38 chr3 35351461 35351774 -192172804 + AluJo SINE Alu 1 301 -11 821 285 162 15 chr3 35351870 35352210 -192172368 + LTR16C LTR ERVL 99 488 -3 410 236 14 25 chr3 35352216 35352232 -192172346 + MER5A DNA MER1_type 72 87 -102 1035 208 47 24 chr3 35352232 35352487 -192172091 + MIR SINE MIR 2 262 0 410 236 14 25 chr3 35352487 35352583 -192171995 + MER5A DNA MER1_type 87 189 0 416 220 44 11 chr3 35352849 35352940 -192171638 + MER5A DNA MER1_type 1 94 -95 411 245 0 32 chr3 35352970 35353064 -192171514 - MLT1F1 LTR MaLR -442 125 35 1845 216 233 51 chr3 35353067 35353848 -192170730 - L1MC4 LINE L1 -908 7134 6212 301 273 68 15 chr3 35353979 35354111 -192170467 - L1ME4a LINE L1 -17 6104 5966 284 274 0 0 chr3 35355082 35355144 -192169434 - L2 LINE L2 -10 3262 3201 2347 180 27 56 chr3 35355345 35355829 -192168749 - MER82 DNA MER2_type -22 631 162 1819 189 43 9 chr3 35355826 35356176 -192168402 + MLT1A2 LTR MaLR 6 367 -7 * 279 310 0 0 chr3 35356177 35356248 -192168330 - L2 LINE L2 -55 3258 3188 361 217 9 85 chr3 35356297 35356403 -192168175 + L1ME LINE L1 5622 5719 -443 699 206 22 15 chr3 35356422 35356558 -192168020 + FLAM_A SINE Alu 6 142 0 5914 131 37 32 chr3 35356684 35358058 -192166520 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 35358138 35358199 -192166379 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 315 49 0 0 chr3 35358993 35359034 -192165544 + (TG)n Simple_repeat Simple_repeat 2 42 0 1691 143 51 11 chr3 35359305 35359602 -192164976 - AluJb SINE Alu 0 308 1 1667 166 254 56 chr3 35359645 35360164 -192164414 + LTR29 LTR ERV1 1 622 0 1782 176 3 7 chr3 35360203 35360509 -192164069 + AluJo SINE Alu 1 305 -7 257 253 40 27 chr3 35360810 35360885 -192163693 - MIR SINE MIR -96 112 37 725 218 163 44 chr3 35360921 35361240 -192163338 - MLT1J1 LTR MaLR -13 433 104 438 326 34 7 chr3 35361885 35362032 -192162546 - MIR SINE MIR -3 259 109 600 150 7 57 chr3 35362034 35362174 -192162404 + L1MC4 LINE L1 7686 7818 -224 2328 96 0 0 chr3 35362174 35362467 -192162111 - AluSg1 SINE Alu -16 293 1 262 111 0 0 chr3 35362481 35362526 -192162052 - AluSp SINE Alu -2 301 257 1813 72 5 0 chr3 35362526 35362748 -192161830 - AluSp SINE Alu -90 223 1 559 138 0 184 chr3 35362748 35362944 -192161634 + L1MC4 LINE L1 7808 7967 -75 1859 185 25 11 chr3 35362948 35363304 -192161274 - MLT1A2 LTR MaLR -13 361 1 337 158 40 13 chr3 35363305 35363381 -192161197 + L1MC4 LINE L1 7965 8042 0 192 225 25 0 chr3 35363410 35363450 -192161128 - MIR SINE MIR -100 108 68 2059 111 36 16 chr3 35363776 35364082 -192160496 + AluSx SINE Alu 1 312 0 180 170 42 42 chr3 35364222 35364387 -192160191 + (TTATA)n Simple_repeat Simple_repeat 1 165 0 207 0 0 0 chr3 35364549 35364572 -192160006 + (A)n Simple_repeat Simple_repeat 1 23 0 2473 65 0 16 chr3 35364573 35364883 -192159695 + AluY SINE Alu 1 305 -6 1997 114 42 7 chr3 35364883 35365172 -192159406 + AluSc SINE Alu 1 299 -10 706 179 0 0 chr3 35365274 35365380 -192159198 - FRAM SINE Alu -17 159 54 242 281 158 53 chr3 35365749 35365863 -192158715 - MIR SINE MIR -63 145 20 2127 110 0 0 chr3 35365901 35366183 -192158395 - AluSg1 SINE Alu -16 293 12 572 163 96 22 chr3 35367620 35367685 -192156893 - MER69 DNA AcHobo 0 2526 2467 2100 120 3 22 chr3 35367685 35368027 -192156551 + AluSx SINE Alu 1 312 0 572 163 96 22 chr3 35368027 35368096 -192156482 - MER69 DNA AcHobo -59 2467 2382 311 217 0 0 chr3 35368249 35368309 -192156269 - MER69 DNA AcHobo -2465 61 2 1864 151 10 10 chr3 35368580 35368872 -192155706 + AluSx SINE Alu 1 292 -20 259 273 0 0 chr3 35368900 35368966 -192155612 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 35369011 35369033 -192155545 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 35369240 35369277 -192155301 + (TG)n Simple_repeat Simple_repeat 2 38 0 2482 123 25 5 chr3 35369299 35369666 -192154912 + THE1C LTR MaLR 2 375 0 871 301 15 4 chr3 35370146 35370405 -192154173 + MIR SINE MIR 1 262 0 2232 102 3 10 chr3 35370878 35371182 -192153396 + AluSx SINE Alu 1 302 -10 1140 136 27 0 chr3 35371866 35372050 -192152528 - MER57B LTR ERV1 0 434 246 568 138 50 8 chr3 35372479 35372617 -192151961 - L1MA5 LINE L1 -162 6006 5875 202 336 16 8 chr3 35372682 35372810 -192151768 + GA-rich Low_complexity Low_complexity 1 129 0 2140 131 0 16 chr3 35374882 35375194 -192149384 + AluSq SINE Alu 1 307 -6 2338 104 7 0 chr3 35375195 35375503 -192149075 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 35375605 35375767 -192148811 + (TA)n Simple_repeat Simple_repeat 2 166 0 2069 113 51 0 chr3 35376092 35376385 -192148193 - AluSg SINE Alu -2 308 1 651 200 0 0 chr3 35376529 35376629 -192147949 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 35376661 35376731 -192147847 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 35376701 35376763 -192147815 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 35377134 35377202 -192147376 + GA-rich Low_complexity Low_complexity 3 72 0 4247 140 13 13 chr3 35377273 35377457 -192147121 - MER41B LTR ERV1 0 635 452 2106 110 7 26 chr3 35377457 35377766 -192146812 - AluSx SINE Alu -9 303 1 4247 140 13 13 chr3 35377766 35378216 -192146362 - MER41B LTR ERV1 -182 453 1 1938 166 0 3 chr3 35378421 35378734 -192145844 + AluJb SINE Alu 1 312 0 231 285 41 32 chr3 35379038 35379161 -192145417 + LTR16A1 LTR ERVL 333 456 -1 502 156 1 0 chr3 35380399 35380489 -192144089 - L1ME2 LINE L1 -1 6169 6078 2128 110 0 7 chr3 35380491 35380773 -192143805 + AluSx SINE Alu 1 280 -32 227 31 31 0 chr3 35380777 35380809 -192143769 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 850 201 58 83 chr3 35380943 35381067 -192143511 + ORSL DNA AcHobo 1 127 -148 2384 78 0 0 chr3 35381067 35381363 -192143215 + AluY SINE Alu 3 298 -13 186 43 0 0 chr3 35381363 35381386 -192143192 + (TA)n Simple_repeat Simple_repeat 2 24 0 850 201 58 83 chr3 35381386 35381538 -192143040 + ORSL DNA AcHobo 125 271 -4 28 48 0 0 chr3 35381984 35382026 -192142552 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 35382098 35382182 -192142396 + (CCG)n Simple_repeat Simple_repeat 3 90 0 628 149 43 0 chr3 35383653 35383747 -192140831 + AluS SINE Alu 2 99 -214 1635 113 34 8 chr3 35383747 35383986 -192140592 + AluSx SINE Alu 54 298 -14 1068 90 8 0 chr3 35385085 35385219 -192139359 + AluY SINE Alu 1 135 -176 321 186 60 18 chr3 35385249 35385416 -192139162 + A-rich Low_complexity Low_complexity 1 174 0 230 207 60 20 chr3 35385433 35385583 -192138995 + A-rich Low_complexity Low_complexity 1 156 0 1222 114 49 0 chr3 35385585 35385769 -192138809 + AluSc SINE Alu 115 307 -2 1834 126 59 0 chr3 35386449 35386720 -192137858 - AluSx SINE Alu -25 287 1 534 264 65 78 chr3 35387610 35387841 -192136737 + Charlie8 DNA MER1_type 4 231 -2186 1913 148 14 0 chr3 35388016 35388293 -192136285 + AluSx SINE Alu 1 281 -31 528 81 0 0 chr3 35388393 35388467 -192136111 + Alu SINE Alu 235 308 -1 36 0 0 0 chr3 35388972 35389008 -192135570 + AT_rich Low_complexity Low_complexity 1 36 0 2150 105 3 38 chr3 35389874 35390189 -192134389 - AluSx SINE Alu -8 304 1 927 262 97 57 chr3 35390225 35390623 -192133955 + L1M4 LINE L1 4067 4505 -1641 1625 186 7 0 chr3 35390623 35390930 -192133648 + AluJb SINE Alu 1 309 0 927 262 97 57 chr3 35390930 35391199 -192133379 + L1M4 LINE L1 4505 4762 -1384 2239 133 0 0 chr3 35391199 35391508 -192133070 + AluSx SINE Alu 1 309 -3 719 303 201 25 chr3 35391607 35392050 -192132528 + MLT1G1 LTR MaLR 11 531 -64 1315 144 9 18 chr3 35392095 35392324 -192132254 + AluJb SINE Alu 82 308 -4 207 0 0 0 chr3 35392327 35392350 -192132228 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 427 294 60 44 chr3 35392476 35392792 -192131786 + L1M4 LINE L1 2147 2467 -3679 265 274 75 28 chr3 35392799 35392905 -192131673 - MLT1I LTR MaLR -3 406 296 276 279 63 54 chr3 35393018 35393129 -192131449 - MLT1I LTR MaLR -286 123 12 21 0 0 0 chr3 35393389 35393410 -192131168 + AT_rich Low_complexity Low_complexity 1 21 0 1754 163 39 3 chr3 35393423 35393706 -192130872 + AluJo SINE Alu 3 295 -17 14729 166 41 20 chr3 35393891 35399899 -192124679 + L1MA1 LINE L1 11 5893 -1828 2273 105 3 3 chr3 35399899 35400203 -192124375 + AluSx SINE Alu 1 304 -8 14729 166 41 20 chr3 35400203 35400618 -192123960 + L1MA1 LINE L1 5893 6298 -1423 1986 155 3 0 chr3 35400618 35400914 -192123664 + AluSx SINE Alu 1 297 -15 14729 166 41 20 chr3 35400914 35401821 -192122757 + L1MA1 LINE L1 6298 7721 0 2772 207 38 48 chr3 35401819 35402510 -192122068 + L1ME1 LINE L1 5350 6033 -133 * 867 195 58 137 chr3 35403226 35403621 -192120957 + MLT1A2 LTR MaLR 1 364 -10 222 44 44 22 chr3 35403655 35403700 -192120878 + (TA)n Simple_repeat Simple_repeat 1 46 0 867 224 52 56 chr3 35403711 35403997 -192120581 + L1ME3A LINE L1 5860 6144 -26 303 285 70 0 chr3 35404027 35404199 -192120379 + L1M4 LINE L1 5214 5397 -749 385 300 62 12 chr3 35404248 35404408 -192120170 + MIR SINE MIR 81 248 -14 31 82 0 0 chr3 35404654 35404727 -192119851 + AT_rich Low_complexity Low_complexity 1 73 0 1822 162 51 6 chr3 35404859 35405193 -192119385 + L1MC1 LINE L1 5985 6333 0 1090 136 0 0 chr3 35405625 35405787 -192118791 + AluSg/x SINE Alu 146 307 -3 1841 153 27 17 chr3 35406000 35406295 -192118283 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 35406340 35406386 -192118192 + AT_rich Low_complexity Low_complexity 1 46 0 2379 89 0 10 chr3 35406445 35406759 -192117819 + AluSx SINE Alu 1 311 -1 359 327 20 20 chr3 35407794 35407944 -192116634 - L2 LINE L2 0 3272 3123 621 251 112 18 chr3 35408206 35408429 -192116149 - MIR SINE MIR -3 259 16 244 255 0 0 chr3 35408772 35408823 -192115755 + L2 LINE L2 3219 3269 -3 454 273 70 0 chr3 35408832 35408960 -192115618 - LTR16C LTR ERVL 0 491 355 1709 182 20 0 chr3 35408960 35409257 -192115321 + AluJb SINE Alu 1 303 -9 599 259 184 9 chr3 35409260 35409488 -192115090 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 35409674 35409739 -192114839 + GA-rich Low_complexity Low_complexity 3 65 0 2313 76 31 0 chr3 35410625 35410916 -192113662 + AluY SINE Alu 1 300 -11 426 306 126 10 chr3 35411598 35411621 -192112957 + MIR SINE MIR 1 20 -242 1812 172 47 0 chr3 35411621 35411917 -192112661 + AluJo SINE Alu 1 310 -2 426 306 126 10 chr3 35411917 35412092 -192112486 + MIR SINE MIR 20 222 -40 256 169 89 202 chr3 35412649 35412729 -192111849 + L1M4b LINE L1 11 74 -6785 1706 130 20 0 chr3 35412729 35412976 -192111602 + AluJo SINE Alu 36 287 -25 256 169 89 202 chr3 35412976 35413019 -192111559 + L1M4b LINE L1 74 120 -6739 2357 67 40 0 chr3 35413019 35413317 -192111261 + AluY SINE Alu 1 310 -1 869 226 44 67 chr3 35413334 35413604 -192110974 + L1M4b LINE L1 104 367 -6492 1993 134 0 0 chr3 35413751 35414019 -192110559 - AluSg SINE Alu -42 268 1 187 310 46 23 chr3 35414745 35414832 -192109746 + MIR3 SINE MIR 98 186 -22 214 328 171 26 chr3 35415005 35415386 -192109192 - L2 LINE L2 -468 2846 2411 519 214 0 10 chr3 35415424 35415522 -192109056 + AluSp SINE Alu 113 209 -104 1290 181 107 65 chr3 35415522 35415954 -192108624 + LTR7 LTR ERV1 1 450 0 2840 154 22 66 chr3 35415954 35416603 -192107975 + HERVH LTR ERV1 1 620 -7093 * 12037 111 7 29 chr3 35416591 35418448 -192106130 + HERVH LTR ERV1 756 2571 -5142 3478 102 12 6 chr3 35418436 35418935 -192105643 + HERVH LTR ERV1 5318 5819 -1894 * 2562 103 18 13 chr3 35418935 35419323 -192105255 + HERVH LTR ERV1 7324 7713 0 1291 183 109 67 chr3 35419323 35419755 -192104823 + LTR7 LTR ERV1 1 450 0 1347 160 44 0 chr3 35419755 35419980 -192104598 + AluJo SINE Alu 70 304 -8 366 298 63 121 chr3 35420109 35420538 -192104040 + MLT1K LTR MaLR 180 583 -5 368 275 63 7 chr3 35420547 35420689 -192103889 - L2 LINE L2 -898 2416 2267 448 363 50 40 chr3 35420703 35420757 -192103821 - L3 LINE CR1 -910 667 615 1834 172 0 13 chr3 35420757 35421059 -192103519 + AluJb SINE Alu 4 301 -11 448 363 50 40 chr3 35421059 35421403 -192103175 - L3 LINE CR1 -962 615 265 785 71 0 0 chr3 35421468 35421566 -192103012 + HY3 scRNA scRNA 2 99 -2 400 243 98 35 chr3 35421858 35422031 -192102547 + MIR SINE MIR 47 230 -32 189 107 0 0 chr3 35422039 35422067 -192102511 + (T)n Simple_repeat Simple_repeat 1 28 0 1540 165 0 0 chr3 35422083 35422313 -192102265 - AluJb SINE Alu -82 230 1 432 278 120 0 chr3 35422338 35422446 -192102132 + AluSq/x SINE Alu 1 121 -181 502 154 13 0 chr3 35422457 35422535 -192102043 - MER51A LTR ERV1 -87 547 469 21 36 0 0 chr3 35422542 35422570 -192102008 + AT_rich Low_complexity Low_complexity 1 28 0 2252 118 0 3 chr3 35422955 35423251 -192101327 - AluSq SINE Alu -18 295 1 802 354 9 121 chr3 35423254 35423593 -192100985 - AluSx SINE Alu -1 301 1 195 354 40 0 chr3 35423736 35423835 -192100743 + L2 LINE L2 3169 3271 -1 271 219 67 84 chr3 35424092 35424211 -192100367 + MLT1J LTR MaLR 11 127 -384 376 258 0 21 chr3 35424683 35424780 -192099798 + HERVL32 LTR ERVL 3323 3417 -1 2483 77 3 13 chr3 35424780 35425092 -192099486 + AluSp SINE Alu 1 309 -4 1839 132 108 35 chr3 35425109 35425451 -192099127 + LTR32 LTR ERVL 13 379 -92 2306 94 0 10 chr3 35425461 35425770 -192098808 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 35425840 35425917 -192098661 + GA-rich Low_complexity Low_complexity 1 75 0 756 125 0 76 chr3 35425969 35426113 -192098465 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 35426304 35426346 -192098232 + (TG)n Simple_repeat Simple_repeat 2 43 0 2316 98 3 3 chr3 35426369 35426675 -192097903 + AluSq SINE Alu 1 306 -7 1228 184 55 122 chr3 35426735 35426926 -192097652 + MLT2C2 LTR ERVL 52 254 -210 2269 91 0 7 chr3 35426926 35427234 -192097344 + AluSg SINE Alu 1 306 0 1228 184 55 122 chr3 35427234 35427434 -192097144 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 35427434 35427491 -192097087 + (CA)n Simple_repeat Simple_repeat 1 57 0 1228 184 55 122 chr3 35427491 35427533 -192097045 + MLT2C2 LTR ERVL 415 458 -6 325 245 0 0 chr3 35427541 35427594 -192096984 - MER45 DNA AcHobo -900 53 1 1083 198 76 64 chr3 35427939 35428268 -192096310 - MER46C DNA MER2_type -1 337 5 2286 114 3 0 chr3 35428773 35429081 -192095497 - AluSc SINE Alu 0 309 1 1563 180 7 20 chr3 35429647 35429942 -192094636 - AluJo SINE Alu -21 291 1 2191 112 0 3 chr3 35430045 35430341 -192094237 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 35430700 35430723 -192093855 + (GA)n Simple_repeat Simple_repeat 2 24 0 367 219 104 0 chr3 35430865 35430961 -192093617 + MER53 DNA DNA 2 107 -82 227 354 107 41 chr3 35431016 35431593 -192092985 - L2 LINE L2 -2 3270 2656 1543 253 28 39 chr3 35431784 35432278 -192092300 - LTR16C LTR ERVL -2 489 1 542 308 59 45 chr3 35432312 35432666 -192091912 - L3 LINE CR1 -72 1505 1147 187 250 0 0 chr3 35433225 35433269 -192091309 - MIR SINE MIR -60 148 105 924 289 124 36 chr3 35433324 35433537 -192091041 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 35433537 35433557 -192091021 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 924 289 124 36 chr3 35433557 35433568 -192091010 + MLT1K LTR MaLR 203 212 -376 2062 124 28 0 chr3 35433568 35433850 -192090728 - AluSg SINE Alu -20 290 1 924 289 124 36 chr3 35433850 35434091 -192090487 + MLT1K LTR MaLR 212 517 -71 231 288 27 0 chr3 35434101 35434174 -192090404 + CT-rich Low_complexity Low_complexity 5 79 0 2370 174 24 9 chr3 35434357 35434777 -192089801 + MSTB LTR MaLR 1 426 0 2218 113 3 0 chr3 35434829 35435122 -192089456 - AluSg SINE Alu -16 294 1 431 271 16 39 chr3 35435131 35435260 -192089318 - MIR SINE MIR -67 141 16 298 206 55 27 chr3 35435328 35435401 -192089177 + MIR3 SINE MIR 106 180 -28 183 129 0 0 chr3 35435505 35435536 -192089042 + (CA)n Simple_repeat Simple_repeat 1 31 0 2217 109 0 10 chr3 35435988 35436281 -192088297 - AluSg1 SINE Alu -18 291 2 28 29 0 0 chr3 35436281 35436316 -192088262 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 35436339 35436360 -192088218 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1923 160 0 0 chr3 35436363 35436650 -192087928 - AluSx SINE Alu -25 287 1 1628 204 83 39 chr3 35436848 35437259 -192087319 - MER21A LTR ERV1 0 931 503 1248 184 18 9 chr3 35437332 35437555 -192087023 - MER21B LTR ERV1 -638 225 1 1628 153 10 37 chr3 35438068 35438362 -192086216 - AluJb SINE Alu -18 294 9 248 205 0 58 chr3 35438738 35438963 -192085615 + AluJo SINE Alu 2 291 -11 436 225 62 62 chr3 35439701 35439879 -192084699 + MIR SINE MIR 32 209 -53 2214 124 0 3 chr3 35440068 35440367 -192084211 + AluSx SINE Alu 1 298 -14 1988 121 13 20 chr3 35440396 35440694 -192083884 + AluSx SINE Alu 1 296 -16 626 68 11 0 chr3 35440810 35440898 -192083680 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2158 110 17 3 chr3 35441009 35441300 -192083278 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 35441374 35441493 -192083085 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 35442136 35442422 -192082156 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 35442433 35442695 -192081883 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 35442695 35442757 -192081821 - AluS SINE Alu -245 67 6 423 248 35 35 chr3 35442773 35442886 -192081692 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 35442888 35443201 -192081377 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 35443211 35443388 -192081190 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 35443408 35443705 -192080873 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 35443862 35443998 -192080580 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 35444763 35444829 -192079749 - L2 LINE L2 -1 3312 3241 284 45 0 0 chr3 35444877 35444921 -192079657 - AluY SINE Alu 0 302 259 1232 198 78 30 chr3 35445022 35445325 -192079253 + AluJo SINE Alu 32 347 0 186 253 36 60 chr3 35445543 35445626 -192078952 + MIR3 SINE MIR 120 200 -8 1260 218 90 96 chr3 35446510 35447037 -192077541 + L1MC5 LINE L1 7174 7697 -264 297 0 0 0 chr3 35447037 35447070 -192077508 + (TA)n Simple_repeat Simple_repeat 2 34 0 1260 218 90 96 chr3 35447070 35447305 -192077273 + L1MC5 LINE L1 7697 7932 -29 279 311 104 16 chr3 35447408 35447591 -192076987 - MIR SINE MIR -57 205 7 1857 84 21 0 chr3 35447620 35447857 -192076721 + AluSx SINE Alu 5 246 -66 273 57 0 0 chr3 35447863 35447898 -192076680 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr3 35452129 35452149 -192072429 + (T)n Simple_repeat Simple_repeat 1 20 0 360 0 0 0 chr3 35456283 35456323 -192068255 + (A)n Simple_repeat Simple_repeat 1 40 0 206 205 0 0 chr3 35457366 35457405 -192067173 + (CCG)n Simple_repeat Simple_repeat 2 40 0 336 277 107 103 chr3 35457410 35457839 -192066739 - L1M2 LINE L1 -5891 958 528 306 73 0 0 chr3 35458609 35458650 -192065928 + (T)n Simple_repeat Simple_repeat 1 41 0 204 132 79 0 chr3 35460950 35460988 -192063590 + (CATTA)n Simple_repeat Simple_repeat 4 44 0 220 186 0 0 chr3 35462912 35462955 -192061623 + (CAT)n Simple_repeat Simple_repeat 3 45 0 339 281 38 16 chr3 35463850 35464010 -192060568 + MIR SINE MIR 21 232 -30 206 298 82 64 chr3 35464040 35464211 -192060367 - L2 LINE L2 -17 3255 3082 376 270 26 0 chr3 35465010 35465125 -192059453 - MIR SINE MIR -106 156 39 539 322 19 19 chr3 35465376 35465587 -192058991 - MIR SINE MIR -4 258 48 24 32 0 0 chr3 35466557 35466588 -192057990 + AT_rich Low_complexity Low_complexity 1 31 0 212 254 63 32 chr3 35467501 35467564 -192057014 - L2 LINE L2 -15 3257 3193 948 179 6 0 chr3 35467643 35467805 -192056773 + MER5B DNA MER1_type 1 163 -15 369 203 214 16 chr3 35468205 35468314 -192056264 - HsTC2 DNA Tc2 -4 1894 1808 1954 118 20 49 chr3 35468314 35468618 -192055960 - AluSx SINE Alu -17 295 1 369 203 214 16 chr3 35468618 35468690 -192055888 - HsTC2 DNA Tc2 -90 1808 1677 417 277 92 0 chr3 35468698 35468817 -192055761 - HsTC2 DNA Tc2 -1763 135 6 493 283 29 29 chr3 35468838 35469011 -192055567 - MIR SINE MIR -41 221 49 2017 243 35 10 chr3 35469368 35469886 -192054692 - L1ME3A LINE L1 -26 6144 5614 286 170 66 0 chr3 35470340 35470446 -192054132 + (TA)n Simple_repeat Simple_repeat 1 113 0 276 310 52 0 chr3 35470884 35471000 -192053578 + MLT1L LTR MaLR 364 485 -130 355 288 125 46 chr3 35471197 35471551 -192053027 - L1MC/D LINE L1 -387 5734 5356 344 297 118 49 chr3 35471758 35472004 -192052574 - L1MC/D LINE L1 -1149 4997 4735 1651 185 0 4 chr3 35472068 35472349 -192052229 - AluJb SINE Alu -32 280 1 1388 171 70 49 chr3 35472405 35472691 -192051887 + AluSg SINE Alu 1 292 -18 1910 193 11 45 chr3 35472890 35473264 -192051314 - MLT1A1 LTR MaLR -4 361 1 2333 85 20 0 chr3 35473395 35473688 -192050890 + AluSg SINE Alu 1 299 -11 272 27 27 0 chr3 35473688 35473725 -192050853 + (TA)n Simple_repeat Simple_repeat 2 39 0 1055 217 35 0 chr3 35474313 35474543 -192050035 + Charlie1 DNA MER1_type 2 239 -2522 764 187 27 0 chr3 35474517 35474667 -192049911 + Charlie1 DNA MER1_type 2608 2761 0 * 1602 165 46 11 chr3 35474748 35475033 -192049545 - AluJo SINE Alu -17 295 1 2268 89 7 14 chr3 35475115 35475408 -192049170 - AluSx SINE Alu -21 291 1 199 256 38 128 chr3 35475743 35475876 -192048702 + L2 LINE L2 2703 2823 -491 1816 113 0 4 chr3 35476179 35476426 -192048152 - AluSx SINE Alu -66 246 1 2460 71 0 0 chr3 35476877 35477188 -192047390 - AluY SINE Alu 0 311 1 403 305 0 38 chr3 35477313 35477444 -192047134 + L2 LINE L2 3188 3313 0 313 85 21 0 chr3 35477765 35477812 -192046766 - MLT2C2 LTR ERVL 0 464 417 275 330 50 0 chr3 35478158 35478258 -192046320 - L2 LINE L2 -6 3266 3162 1263 253 14 0 chr3 35478562 35478679 -192045899 + AluJo SINE Alu 1 115 -197 186 43 0 0 chr3 35478679 35478702 -192045876 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1263 253 14 0 chr3 35478702 35478861 -192045717 + AluJo SINE Alu 115 281 -31 2320 92 3 0 chr3 35478981 35479273 -192045305 - AluSp SINE Alu -20 293 1 1809 130 0 48 chr3 35479687 35480002 -192044576 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr3 35480097 35480121 -192044457 + AT_rich Low_complexity Low_complexity 1 24 0 273 182 136 0 chr3 35480402 35480468 -192044110 - L1M4 LINE L1 -1454 4692 4618 232 192 0 39 chr3 35480607 35480659 -192043919 - L1M4 LINE L1 -1519 4627 4578 2051 128 7 10 chr3 35480969 35481266 -192043312 - AluSx SINE Alu -16 296 1 728 333 80 22 chr3 35481284 35481847 -192042731 - L2 LINE L2 0 3313 2706 3682 32 0 0 chr3 35481847 35482253 -192042325 + L1PA3 LINE L1 5747 6152 -3 359 351 72 14 chr3 35482322 35482544 -192042034 - L2 LINE L2 -596 2718 2484 250 174 110 64 chr3 35483496 35483605 -192040973 - L1ME LINE L1 -703 5463 5350 2415 71 0 46 chr3 35483623 35483948 -192040630 + AluSg SINE Alu 1 310 0 24 0 0 0 chr3 35483991 35484015 -192040563 + AT_rich Low_complexity Low_complexity 1 24 0 1251 122 0 6 chr3 35484187 35484367 -192040211 + AluSc SINE Alu 118 296 -13 350 167 0 15 chr3 35484367 35484433 -192040145 + MLT1A1 LTR MaLR 301 365 0 1768 189 79 0 chr3 35484513 35484904 -192039674 + L1MC3 LINE L1 7364 7785 0 1072 245 81 81 chr3 35485411 35485441 -192039137 + MLT1H1 LTR MaLR 32 61 -494 1635 174 40 23 chr3 35485441 35485740 -192038838 + AluJo SINE Alu 1 304 -8 1072 245 81 81 chr3 35485740 35486231 -192038347 + MLT1H1 LTR MaLR 60 553 -2 23 0 0 0 chr3 35486575 35486598 -192037980 + AT_rich Low_complexity Low_complexity 1 23 0 314 205 13 0 chr3 35486647 35486725 -192037853 + GA-rich Low_complexity Low_complexity 2 80 0 734 303 25 25 chr3 35486811 35487049 -192037529 - MIR SINE MIR -13 249 12 203 0 0 36 chr3 35487099 35487127 -192037451 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 319 250 175 50 chr3 35487344 35487537 -192037041 + MIR SINE MIR 18 235 -27 264 313 52 10 chr3 35487547 35487643 -192036935 + MIR SINE MIR 8 107 -155 1135 211 87 13 chr3 35487831 35488130 -192036448 - L1ME1 LINE L1 0 6166 5846 366 276 105 0 chr3 35489064 35489169 -192035409 - L2 LINE L2 -1 3312 3197 258 254 0 0 chr3 35490849 35490904 -192033674 - L2 LINE L2 -7 3306 3252 258 330 11 11 chr3 35491205 35491299 -192033279 - MIR SINE MIR -110 152 59 220 281 79 53 chr3 35491478 35491592 -192032986 + MIR SINE MIR 56 172 -90 1472 190 7 31 chr3 35491838 35492155 -192032423 + AluJb SINE Alu 1 310 0 1991 112 52 3 chr3 35492273 35492559 -192032019 + AluSq SINE Alu 1 300 -13 2351 180 0 2 chr3 35492954 35493354 -192031224 - L1MB3 LINE L1 -11 6172 5774 2542 244 26 10 chr3 35493354 35493980 -192030598 + L1ME3A LINE L1 5507 6142 -28 1210 86 0 0 chr3 35494020 35494206 -192030372 + AluSc SINE Alu 133 318 0 1972 134 0 3 chr3 35494219 35494523 -192030055 + AluSx SINE Alu 1 303 0 1577 175 4 26 chr3 35494854 35495122 -192029456 + AluJo SINE Alu 2 263 -49 24 0 0 0 chr3 35495137 35495161 -192029417 + AT_rich Low_complexity Low_complexity 1 24 0 337 341 131 28 chr3 35495208 35495384 -192029194 - MIR3 SINE MIR -7 201 8 1846 203 157 13 chr3 35495468 35495921 -192028657 + MLT1H LTR MaLR 30 547 -2 191 294 75 81 chr3 35496930 35497090 -192027488 - L2 LINE L2 -1 3312 3154 2030 152 7 0 chr3 35497137 35497447 -192027131 - AluSx SINE Alu 0 312 1 13652 143 24 6 chr3 35497725 35499858 -192024720 + Tigger7 DNA MER2_type 2 2173 -314 903 179 19 0 chr3 35499858 35500014 -192024564 - FRAM SINE Alu -17 159 1 1468 176 0 30 chr3 35500114 35500381 -192024197 - AluJb SINE Alu -53 259 1 1892 106 92 13 chr3 35500381 35500684 -192023894 + Tigger7 DNA MER2_type 2161 2487 0 1650 191 35 60 chr3 35500703 35501154 -192023424 - LTR56 LTR ERV1 0 445 6 204 135 0 0 chr3 35501982 35502019 -192022559 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2087 122 34 0 chr3 35502297 35502592 -192021986 + AluSx SINE Alu 1 305 -7 908 209 33 19 chr3 35503338 35503549 -192021029 - MER20 DNA MER1_type -5 214 1 2165 113 7 7 chr3 35503653 35503954 -192020624 - AluSp SINE Alu -1 312 12 230 338 86 13 chr3 35504866 35505017 -192019561 + MER5B DNA MER1_type 1 162 -16 574 267 41 0 chr3 35505076 35505248 -192019330 - MIR SINE MIR -16 246 68 1025 256 65 31 chr3 35506677 35506913 -192017665 - MER102b DNA MER1_type -1096 332 81 1386 180 113 11 chr3 35506913 35507077 -192017501 - AluJo SINE Alu 0 312 166 360 0 0 0 chr3 35507077 35507117 -192017461 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1386 180 113 11 chr3 35507117 35507235 -192017343 - AluJo SINE Alu -146 166 1 1025 256 65 31 chr3 35507235 35507319 -192017259 - MER102b DNA MER1_type -1347 81 1 2013 123 3 3 chr3 35507335 35507620 -192016958 - AluSx SINE Alu -20 292 8 540 341 19 0 chr3 35507900 35508105 -192016473 - MIR SINE MIR -26 236 28 2276 108 0 0 chr3 35508148 35508443 -192016135 + AluSc SINE Alu 1 295 -14 1537 183 60 7 chr3 35508650 35508935 -192015643 + AluJo SINE Alu 1 300 -12 829 186 21 0 chr3 35509739 35509879 -192014699 + AluJo SINE Alu 40 182 -130 6344 42 16 0 chr3 35510781 35511535 -192013043 - L1PA5 LINE L1 -7 6147 5382 519 256 0 30 chr3 35511798 35511931 -192012647 + L2 LINE L2 3185 3313 0 521 291 18 9 chr3 35512391 35512554 -192012024 - MIR SINE MIR -46 162 3 21 57 0 0 chr3 35514332 35514367 -192010211 + AT_rich Low_complexity Low_complexity 1 35 0 552 323 74 3 chr3 35514600 35514885 -192009693 + L2 LINE L2 2297 2601 -713 2123 113 40 0 chr3 35515942 35516242 -192008336 + AluSp SINE Alu 2 313 0 219 183 84 84 chr3 35516342 35516413 -192008165 - L3 LINE CR1 -257 1320 1250 278 100 0 0 chr3 35517689 35517729 -192006849 + L1ME4a LINE L1 5971 6010 -111 216 67 0 0 chr3 35517756 35517786 -192006792 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 474 84 28 0 chr3 35517837 35517908 -192006670 - L1PB4 LINE L1 0 6156 6084 236 165 76 13 chr3 35517922 35518001 -192006577 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 36 70 0 0 chr3 35519029 35519100 -192005478 + AT_rich Low_complexity Low_complexity 1 71 0 1854 111 55 4 chr3 35519108 35519379 -192005199 - AluSg SINE Alu -25 285 1 2147 67 41 0 chr3 35519382 35519694 -192004884 - AluY SINE Alu 0 323 1 42771 43 26 2 chr3 35519704 35525704 -191998874 - L1PA7 LINE L1 -5 6149 2 243 0 0 0 chr3 35525993 35526020 -191998558 + (T)n Simple_repeat Simple_repeat 1 27 0 235 233 56 44 chr3 35526135 35526225 -191998353 + MLT1I LTR MaLR 122 212 -197 387 0 0 0 chr3 35526372 35526415 -191998163 + (A)n Simple_repeat Simple_repeat 1 43 0 680 179 173 0 chr3 35527437 35527605 -191996973 + MIR SINE MIR 58 254 -8 1277 280 103 0 chr3 35528142 35528549 -191996029 - LTR16C LTR ERVL 0 491 43 294 153 0 69 chr3 35528637 35528709 -191995869 - L1ME4a LINE L1 -105 6016 5950 2023 154 0 10 chr3 35529310 35529621 -191994957 + AluJb SINE Alu 1 308 -4 2633 207 39 25 chr3 35529833 35530467 -191994111 + L1MC4 LINE L1 7228 7870 -172 386 250 93 43 chr3 35530628 35530768 -191993810 + L1ME4a LINE L1 5946 6092 -29 786 108 0 0 chr3 35530952 35531054 -191993524 - AluY SINE Alu -16 295 194 4237 270 101 32 chr3 35531116 35531254 -191993324 + HAL1 LINE L1 230 357 -2150 2015 125 54 65 chr3 35531254 35531622 -191992956 - THE1B LTR MaLR 0 364 1 4237 270 101 32 chr3 35531622 35532331 -191992247 + HAL1 LINE L1 357 1016 -1491 2804 26 0 0 chr3 35532331 35532642 -191991936 + AluYb8 SINE Alu 1 311 -7 4237 270 101 32 chr3 35532642 35533594 -191990984 + HAL1 LINE L1 1016 2166 -341 2265 108 0 10 chr3 35533594 35533908 -191990670 + AluSx SINE Alu 1 311 -1 4237 270 101 32 chr3 35533908 35533979 -191990599 + HAL1 LINE L1 2166 2231 -276 691 147 0 0 chr3 35534035 35534137 -191990441 + AluSg/x SINE Alu 199 300 -10 261 0 0 0 chr3 35534273 35534302 -191990276 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 2987 71 3 3 chr3 35534302 35534670 -191989908 - L1PA7 LINE L1 -17 6137 5770 535 275 81 40 chr3 35534680 35535027 -191989551 + MLT1L LTR MaLR 144 536 -79 1487 220 20 43 chr3 35535404 35535754 -191988824 + MLT1A1 LTR MaLR 1 342 -23 780 179 8 0 chr3 35535762 35535885 -191988693 - AluJb SINE Alu -187 125 2 304 211 0 0 chr3 35535888 35535940 -191988638 + MLT1A1 LTR MaLR 323 374 0 232 133 33 0 chr3 35536603 35536663 -191987915 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 225 242 48 0 chr3 35536842 35536904 -191987674 + MLT1L LTR MaLR 549 613 -2 996 172 0 0 chr3 35538049 35538206 -191986372 + FRAM SINE Alu 8 164 -12 444 308 27 36 chr3 35538321 35538542 -191986036 + L2 LINE L2 2588 2806 -508 2005 201 80 30 chr3 35538655 35539092 -191985486 + MLT1C LTR MaLR 7 465 -2 289 297 201 10 chr3 35539096 35539305 -191985273 + L2 LINE L2 2976 3224 -48 191 250 125 0 chr3 35539493 35539549 -191985029 - MIR3 SINE MIR -31 177 115 1095 83 0 0 chr3 35541044 35541176 -191983402 + AluSp SINE Alu 1 132 -181 2252 122 0 0 chr3 35541178 35541481 -191983097 + AluSx SINE Alu 1 303 -9 1846 110 21 11 chr3 35541644 35541968 -191982610 + AluSp SINE Alu 1 327 0 563 279 118 27 chr3 35542239 35542501 -191982077 - LTR50 LTR ERVL 0 795 510 565 241 74 42 chr3 35542516 35542732 -191981846 - LTR50 LTR ERVL -569 226 4 822 262 53 17 chr3 35542758 35543093 -191981485 - MLT1I LTR MaLR -9 400 18 233 294 28 64 chr3 35543574 35543683 -191980895 + L2 LINE L2 3197 3301 -12 2009 163 0 3 chr3 35544231 35544537 -191980041 - AluJb SINE Alu -7 305 1 400 302 99 6 chr3 35544792 35544974 -191979604 - L1MC4a LINE L1 -1925 5883 5685 198 0 0 0 chr3 35545417 35545439 -191979139 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2064 137 0 13 chr3 35545531 35545838 -191978740 - AluSx SINE Alu -9 303 1 1790 164 3 3 chr3 35546306 35546648 -191977930 - AluJb SINE Alu 0 342 1 24 0 0 0 chr3 35546657 35546681 -191977897 + AT_rich Low_complexity Low_complexity 1 24 0 335 281 111 20 chr3 35547030 35547183 -191977395 - MIR SINE MIR -93 169 3 306 0 0 0 chr3 35548496 35548530 -191976048 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 128 0 7 chr3 35548709 35549014 -191975564 - AluSx SINE Alu -9 303 1 1851 179 3 6 chr3 35550231 35550544 -191974034 - AluJo SINE Alu 0 312 1 273 29 0 0 chr3 35550599 35550633 -191973945 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6687 31 0 0 chr3 35550633 35551365 -191973213 - L1PA3 LINE L1 -18 6137 5406 511 250 111 14 chr3 35551505 35551649 -191972929 - MER115 DNA AcHobo -485 208 51 183 200 0 0 chr3 35551649 35551689 -191972889 - MER5C DNA MER1_type -1 323 284 417 287 0 39 chr3 35551778 35551907 -191972671 - MER5C DNA MER1_type -200 124 1 626 304 51 26 chr3 35552152 35552309 -191972269 - Tigger8 DNA MER2_type -66 600 449 2424 87 6 0 chr3 35552309 35552620 -191971958 + AluSp SINE Alu 1 313 0 626 304 51 26 chr3 35552620 35552774 -191971804 - Tigger8 DNA MER2_type -217 449 281 383 145 12 0 chr3 35552864 35552947 -191971631 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 1318 267 56 3 chr3 35553991 35554350 -191970228 + LTR16C LTR ERVL 114 491 0 2376 112 0 0 chr3 35554396 35554708 -191969870 + AluSx SINE Alu 1 312 0 680 276 106 82 chr3 35554821 35555245 -191969333 - MLT1J2 LTR MaLR -14 436 3 38 61 0 0 chr3 35555292 35555358 -191969220 + AT_rich Low_complexity Low_complexity 1 66 0 417 231 39 10 chr3 35555358 35555462 -191969116 + L2 LINE L2 3163 3269 -3 1080 279 88 9 chr3 35555906 35556325 -191968253 - L1ME3A LINE L1 -5 6165 5714 1633 188 3 11 chr3 35556488 35556770 -191967808 + AluJb SINE Alu 3 282 -30 333 118 0 0 chr3 35556774 35556825 -191967753 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 752 271 62 60 chr3 35556864 35557329 -191967249 - MLT1H LTR MaLR -7 542 77 818 280 102 18 chr3 35558286 35558561 -191966017 + LTR16C LTR ERVL 77 374 -117 2047 217 62 2 chr3 35558601 35559099 -191965479 - MER74A LTR ERVL -30 528 1 368 219 38 19 chr3 35559103 35559208 -191965370 + LTR16C LTR ERVL 381 487 -4 243 329 0 0 chr3 35559417 35559496 -191965082 - MER63 DNA MER1_type -5 1056 978 526 156 138 0 chr3 35559498 35559607 -191964971 - MER63 DNA MER1_type -86 750 1 257 344 89 45 chr3 35559636 35559793 -191964785 - MIR3 SINE MIR -4 204 41 2307 111 0 3 chr3 35560656 35560963 -191963615 - AluSq SINE Alu -2 311 6 256 224 0 0 chr3 35561006 35561064 -191963514 + MLT1A1 LTR MaLR 1 58 -307 730 120 0 0 chr3 35561246 35561363 -191963215 + (CA)n Simple_repeat Simple_repeat 1 117 0 580 300 92 4 chr3 35561791 35562031 -191962547 - MIR SINE MIR 0 262 2 202 211 0 0 chr3 35562236 35562274 -191962304 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 608 285 186 16 chr3 35562885 35563267 -191961311 + LTR16A LTR ERVL 2 448 -2 323 322 49 35 chr3 35563277 35563420 -191961158 - MIR3 SINE MIR -59 149 5 376 306 72 17 chr3 35563672 35563852 -191960726 + L2 LINE L2 3124 3313 0 293 312 33 33 chr3 35564733 35564893 -191959685 + MIR SINE MIR 31 192 -63 1552 163 222 28 chr3 35564965 35565424 -191959154 + LTR10A LTR ERV1 1 548 -61 1459 269 22 59 chr3 35565452 35565962 -191958616 + LTR16C LTR ERVL 1 491 0 261 0 0 0 chr3 35566144 35566187 -191958391 + (CA)n Simple_repeat Simple_repeat 1 72 0 261 0 0 0 chr3 35566187 35566216 -191958362 + (CA)n Simple_repeat Simple_repeat 1 29 0 2390 97 6 0 chr3 35566580 35566891 -191957687 - AluSp SINE Alu 0 313 1 278 356 14 68 chr3 35567125 35567344 -191957234 - MIR SINE MIR -48 214 8 325 280 30 20 chr3 35567970 35568070 -191956508 - L2 LINE L2 -2 3311 3211 310 242 44 21 chr3 35568132 35568301 -191956277 - LTR33A LTR ERVL 0 523 380 738 306 160 22 chr3 35568717 35569388 -191955190 - L2 LINE L2 -215 3057 2298 322 252 10 29 chr3 35569585 35569688 -191954890 + CT-rich Low_complexity Low_complexity 2 102 0 1160 238 75 4 chr3 35570317 35570598 -191953980 - MLT1G1 LTR MaLR -294 301 1 6144 95 6 3 chr3 35570709 35572166 -191952412 - L1PA12 LINE L1 -1 6167 4713 2088 202 37 55 chr3 35573023 35573587 -191950991 - MLT2B3 LTR ERVL 0 554 1 303 284 85 34 chr3 35573711 35573887 -191950691 + L2 LINE L2 3127 3311 -2 259 191 64 11 chr3 35574158 35574252 -191950326 + L1ME4a LINE L1 6023 6121 0 1635 185 24 0 chr3 35574305 35574592 -191949986 - AluJo SINE Alu -16 296 3 802 148 0 63 chr3 35574819 35574961 -191949617 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr3 35575157 35575182 -191949396 + AT_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr3 35575713 35575762 -191948816 + AT_rich Low_complexity Low_complexity 1 49 0 319 305 79 38 chr3 35575864 35576377 -191948201 - L1ME4a LINE L1 -21 6100 5365 1039 278 94 59 chr3 35576536 35577071 -191947507 - L2 LINE L2 -2 3311 2759 199 242 32 16 chr3 35577074 35577136 -191947442 - L2 LINE L2 -661 2653 2591 367 333 101 0 chr3 35577772 35577910 -191946668 + L2 LINE L2 3162 3313 0 995 285 97 8 chr3 35578116 35578477 -191946101 + LTR16C LTR ERVL 99 491 0 251 256 39 26 chr3 35578505 35578583 -191945995 + MIR SINE MIR 165 243 -19 275 346 0 0 chr3 35579394 35579472 -191945106 + L2 LINE L2 3186 3263 -9 296 54 0 0 chr3 35579562 35579599 -191944979 + U2 snRNA snRNA 1 37 -151 186 303 15 15 chr3 35579787 35579853 -191944725 - L2 LINE L2 -3054 260 195 967 57 0 0 chr3 35580262 35580386 -191944192 - L1PB2 LINE L1 -2 6149 6026 379 282 38 0 chr3 35580530 35580661 -191943917 + MIR3 SINE MIR 65 200 -8 342 288 23 23 chr3 35580927 35581059 -191943519 - L1ME4a LINE L1 -1054 5092 4961 281 291 34 34 chr3 35581392 35581540 -191943038 - L1MC/D LINE L1 -2038 5770 5623 795 272 109 27 chr3 35581834 35582165 -191942413 + MLT1J2 LTR MaLR 93 450 0 2608 62 0 0 chr3 35582199 35582505 -191942073 - AluY SINE Alu -5 306 1 306 260 67 29 chr3 35582549 35582653 -191941925 - HAL1b LINE L1 -463 885 778 235 282 88 54 chr3 35582735 35583029 -191941549 - HAL1b LINE L1 -443 905 602 1975 151 24 0 chr3 35583181 35583473 -191941105 + AluJb SINE Alu 4 302 -10 1019 147 0 89 chr3 35583747 35583971 -191940607 - MER2 DNA MER2_type -135 210 7 1626 174 20 30 chr3 35584175 35584473 -191940105 + AluJo SINE Alu 1 295 -17 706 150 8 8 chr3 35585676 35585818 -191938760 + AluJb SINE Alu 173 312 0 289 305 89 28 chr3 35586416 35586589 -191937989 - MIR3 SINE MIR -43 165 6 28 44 0 44 chr3 35586590 35586658 -191937920 + AT_rich Low_complexity Low_complexity 1 65 0 237 268 42 0 chr3 35586777 35586848 -191937730 - MIR SINE MIR -98 164 91 7527 118 158 17 chr3 35588267 35589222 -191935356 - THE1C-int LTR MaLR 0 1580 367 2394 99 0 6 chr3 35589222 35589535 -191935043 - AluY SINE Alu 0 311 1 7527 118 158 17 chr3 35589535 35589963 -191934615 - THE1C-int LTR MaLR -1213 367 1 1438 152 77 88 chr3 35589966 35590342 -191934236 - THE1C LTR MaLR -3 372 1 20282 138 14 8 chr3 35590348 35591038 -191933540 + L1PA11 LINE L1 1644 2328 -3846 1950 139 0 4 chr3 35591038 35591312 -191933266 + AluSx SINE Alu 1 273 -39 228 35 0 0 chr3 35591319 35591348 -191933230 + (CA)n Simple_repeat Simple_repeat 2 30 0 20282 138 14 8 chr3 35591348 35592092 -191932486 + L1PA11 LINE L1 2333 3071 -3103 219 36 0 0 chr3 35592092 35592120 -191932458 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 20282 138 14 8 chr3 35592120 35594796 -191929782 + L1PA11 LINE L1 3071 5794 -380 240 111 0 0 chr3 35594796 35594832 -191929746 + (TA)n Simple_repeat Simple_repeat 2 37 0 20282 138 14 8 chr3 35594832 35595210 -191929368 + L1PA11 LINE L1 5794 6168 -6 626 270 93 31 chr3 35595272 35595498 -191929080 + MIR SINE MIR 23 262 0 180 77 0 0 chr3 35595774 35595800 -191928778 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1532 178 11 21 chr3 35595802 35596083 -191928495 - AluJo SINE Alu -30 282 5 256 77 26 0 chr3 35596242 35596281 -191928297 + MLT1I LTR MaLR 101 140 -269 292 302 164 22 chr3 35596941 35597168 -191927410 - MIR SINE MIR -3 259 3 26 50 0 0 chr3 35597279 35597319 -191927259 + AT_rich Low_complexity Low_complexity 1 40 0 811 200 45 50 chr3 35597760 35597980 -191926598 - MER20 DNA MER1_type 0 219 1 964 176 0 0 chr3 35598031 35598184 -191926394 - FRAM SINE Alu -25 151 1 454 269 107 13 chr3 35598613 35598762 -191925816 - MIR SINE MIR -90 172 10 4194 168 54 35 chr3 35599411 35600689 -191923889 - L1MA8 LINE L1 -11 7240 5940 7917 223 70 36 chr3 35600821 35602635 -191921943 - L1MA8 LINE L1 -1775 5331 3580 1729 202 9 6 chr3 35602635 35602976 -191921602 - MER2 DNA MER2_type 0 344 3 7917 223 70 36 chr3 35602976 35605137 -191919441 - L1MA8 LINE L1 -3526 3580 1041 548 351 134 40 chr3 35605308 35605961 -191918617 - L2 LINE L2 0 3272 2526 392 287 70 0 chr3 35606070 35606185 -191918393 - MIR3 SINE MIR -39 169 47 208 237 0 0 chr3 35606610 35606669 -191917909 + A-rich Low_complexity Low_complexity 1 59 0 2332 207 66 96 chr3 35607015 35607338 -191917240 + MER21B LTR ERV1 1 332 -531 1228 57 131 11 chr3 35607338 35607368 -191917210 - MER107 DNA MER1_type 0 197 172 182 36 0 36 chr3 35607368 35607396 -191917182 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1228 57 131 11 chr3 35607396 35607541 -191917037 - MER107 DNA MER1_type -25 172 1 2332 207 66 96 chr3 35607541 35608054 -191916524 + MER21B LTR ERV1 332 812 -51 2027 149 0 0 chr3 35608475 35608795 -191915783 + AluSx SINE Alu 1 320 0 392 298 25 50 chr3 35609141 35609258 -191915320 + MER5B DNA MER1_type 2 115 -63 2095 115 7 7 chr3 35609258 35609597 -191914981 - AluSc SINE Alu 0 309 1 392 298 25 50 chr3 35609597 35609640 -191914938 + MER5B DNA MER1_type 115 158 -20 258 200 0 0 chr3 35611043 35611088 -191913490 + MLT1J LTR MaLR 1 45 -466 902 259 17 9 chr3 35611100 35611332 -191913246 + Tigger7 DNA MER2_type 1 234 -499 423 181 24 24 chr3 35611353 35611436 -191913142 + Tigger7 DNA MER2_type 2505 2587 0 606 238 71 52 chr3 35611501 35611952 -191912626 - LTR48B LTR ERV1 -11 776 128 3844 117 42 8 chr3 35611952 35612566 -191912012 - MER41B LTR ERV1 0 635 1 376 253 0 0 chr3 35612570 35612657 -191911921 - MER34 LTR ERV1 -454 88 2 267 272 103 35 chr3 35613396 35613628 -191910950 + HAL1 LINE L1 2254 2501 -6 2213 111 0 10 chr3 35613771 35614078 -191910500 - AluSx SINE Alu -8 304 1 1389 255 96 31 chr3 35614079 35614765 -191909813 - HAL1 LINE L1 -778 1729 999 1330 193 96 0 chr3 35614765 35615014 -191909564 - AluJo SINE Alu -39 273 1 266 253 0 13 chr3 35615066 35615141 -191909437 - HAL1 LINE L1 -2296 211 138 1858 159 83 10 chr3 35615327 35615943 -191908635 + MER39 LTR ERV1 1 705 -2 233 277 36 27 chr3 35616235 35616347 -191908231 + MIR SINE MIR 117 229 -33 376 138 130 29 chr3 35617501 35617639 -191906939 + MER53 DNA DNA 1 152 -37 278 299 104 6 chr3 35618008 35618172 -191906406 - L1ME2 LINE L1 -258 5906 5727 272 109 0 18 chr3 35618949 35619004 -191905574 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 237 11 43 chr3 35619011 35619104 -191905474 + L1MC4 LINE L1 6614 6703 -1339 339 144 31 0 chr3 35619111 35619208 -191905370 + (TA)n Simple_repeat Simple_repeat 2 101 0 325 221 0 53 chr3 35619215 35619310 -191905268 + L1MC4 LINE L1 6614 6703 -1339 185 239 0 11 chr3 35619315 35619407 -191905171 + (TA)n Simple_repeat Simple_repeat 1 91 0 567 144 23 11 chr3 35619525 35619699 -191904879 + (TA)n Simple_repeat Simple_repeat 2 177 0 310 256 11 11 chr3 35619706 35619796 -191904782 + L1MC4 LINE L1 6614 6703 -1339 213 152 13 25 chr3 35619799 35619878 -191904700 + (TA)n Simple_repeat Simple_repeat 2 79 0 442 210 54 30 chr3 35619881 35620048 -191904530 + L1ME4a LINE L1 5935 6105 -16 200 33 0 33 chr3 35620558 35620588 -191903990 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 489 180 63 116 chr3 35621828 35622017 -191902561 - MER20 DNA MER1_type 0 219 41 262 227 206 10 chr3 35622041 35622138 -191902440 - MIR SINE MIR -7 255 140 * 313 260 39 39 chr3 35622124 35622228 -191902350 + L2 LINE L2 3133 3236 -36 1981 253 157 1 chr3 35622297 35623026 -191901552 + L2 LINE L2 2460 3306 -7 257 333 30 77 chr3 35623108 35623276 -191901302 + MER5B DNA MER1_type 1 160 -18 2155 121 3 13 chr3 35623448 35623763 -191900815 - AluSx SINE Alu 0 312 1 621 266 125 0 chr3 35623843 35624027 -191900551 + MIR SINE MIR 56 262 0 229 340 66 28 chr3 35624043 35624149 -191900429 + MER5B DNA MER1_type 60 169 -9 201 263 40 40 chr3 35624293 35624369 -191900209 - MIR3 SINE MIR -17 191 116 320 262 19 48 chr3 35624444 35624547 -191900031 + MER5A DNA MER1_type 14 113 -76 446 271 10 0 chr3 35624557 35624653 -191899925 - MER5B DNA MER1_type -3 175 79 214 264 85 47 chr3 35625061 35625167 -191899411 + MIR SINE MIR 107 216 -46 517 311 85 1 chr3 35625220 35625443 -191899135 - MIR SINE MIR -14 248 7 33 25 0 0 chr3 35625473 35625513 -191899065 + AT_rich Low_complexity Low_complexity 1 40 0 291 191 0 0 chr3 35625903 35625966 -191898612 + CT-rich Low_complexity Low_complexity 2 64 0 598 247 29 12 chr3 35626044 35626214 -191898364 - MER5B DNA MER1_type -3 175 3 197 369 162 0 chr3 35626561 35626672 -191897906 + MIR SINE MIR 19 147 -61 450 291 80 6 chr3 35626819 35626994 -191897584 - MER5A DNA MER1_type -1 188 1 4178 245 31 34 chr3 35627355 35630431 -191894147 + L1M4 LINE L1 816 3990 -2654 3124 169 24 11 chr3 35630411 35630632 -191893946 + L1MB5 LINE L1 5510 5727 -447 * 2732 76 3 0 chr3 35630632 35630986 -191893592 - THE1A LTR MaLR 0 355 1 3124 169 24 11 chr3 35630986 35631385 -191893193 + L1MB5 LINE L1 5727 6138 -36 282 245 95 72 chr3 35631435 35631741 -191892837 - L1MC4a LINE L1 -1693 6115 5803 308 202 10 101 chr3 35632701 35632800 -191891778 + L2 LINE L2 3223 3312 -1 243 127 18 0 chr3 35632838 35632894 -191891684 - MLT2C1 LTR ERVL 0 514 357 1460 188 41 16 chr3 35632943 35633263 -191891315 - MLT2C1 LTR ERVL -62 335 8 2240 104 0 10 chr3 35633266 35633563 -191891015 + AluSx SINE Alu 1 294 -18 279 286 0 0 chr3 35634387 35634450 -191890128 - L2 LINE L2 -2 3311 3249 415 325 58 19 chr3 35635404 35635558 -191889020 - MIR SINE MIR -45 217 58 234 0 0 0 chr3 35636424 35636450 -191888128 + (TA)n Simple_repeat Simple_repeat 2 27 0 2293 101 0 0 chr3 35636450 35636748 -191887830 - AluSx SINE Alu -14 298 1 368 297 47 31 chr3 35637224 35637352 -191887226 + L2 LINE L2 3143 3272 0 334 318 12 0 chr3 35637365 35637450 -191887128 + L2 LINE L2 3210 3295 -18 2490 71 3 7 chr3 35637622 35637932 -191886646 - AluSg SINE Alu -1 309 1 244 305 48 9 chr3 35639287 35639392 -191885186 - MIR3 SINE MIR -7 201 93 1917 138 12 6 chr3 35639897 35640223 -191884355 - MER2 DNA MER2_type -3 342 15 264 277 59 0 chr3 35640227 35640328 -191884250 - MIR SINE MIR -84 178 72 2090 100 21 0 chr3 35640539 35640829 -191883749 + AluSx SINE Alu 3 298 -14 1383 204 72 49 chr3 35640851 35641239 -191883339 + LTR16A1 LTR ERVL 19 415 -42 617 178 40 35 chr3 35641260 35641434 -191883144 + MER53 DNA DNA 15 189 0 258 196 0 0 chr3 35641440 35641486 -191883092 + LTR16A1 LTR ERVL 412 457 0 1008 256 5 0 chr3 35641973 35642196 -191882382 - MER58A DNA MER1_type 0 224 1 250 188 30 20 chr3 35642476 35642577 -191882001 + (TTA)n Simple_repeat Simple_repeat 2 103 0 2125 140 0 3 chr3 35642734 35643048 -191881530 + AluSq SINE Alu 1 313 0 884 226 83 0 chr3 35643979 35644183 -191880395 - MER58A DNA MER1_type -3 221 1 277 315 14 41 chr3 35644326 35644472 -191880106 + MLT1K LTR MaLR 126 267 -321 241 294 9 28 chr3 35644978 35645087 -191879491 + MLT1K LTR MaLR 400 506 -82 374 200 0 0 chr3 35646184 35646264 -191878314 + MER116 DNA Mariner 1 80 0 233 281 208 73 chr3 35646566 35646744 -191877834 + MIR SINE MIR 56 257 -5 201 121 0 0 chr3 35646756 35646789 -191877789 + (TTA)n Simple_repeat Simple_repeat 1 33 0 522 306 121 10 chr3 35646894 35647093 -191877485 + MIR SINE MIR 20 240 -22 660 242 126 61 chr3 35647285 35647611 -191876967 - L2 LINE L2 0 3313 2967 743 241 16 16 chr3 35648018 35648205 -191876373 - MIR SINE MIR -24 238 52 655 242 8 0 chr3 35648229 35648357 -191876221 - MER5A DNA MER1_type 0 189 61 296 135 0 0 chr3 35648376 35648428 -191876150 - MER41A LTR ERV1 -87 467 416 1231 134 19 29 chr3 35648429 35648638 -191875940 + AluSx SINE Alu 1 207 -105 576 231 61 79 chr3 35649057 35649166 -191875412 + MLT1H LTR MaLR 58 167 -382 2207 114 6 28 chr3 35649166 35649483 -191875095 + AluSq SINE Alu 1 310 -3 576 231 61 79 chr3 35649483 35649602 -191874976 + MLT1H LTR MaLR 167 282 -267 632 261 36 22 chr3 35649967 35650243 -191874335 - MER113 DNA MER1_type? -196 325 46 192 40 0 0 chr3 35650650 35650675 -191873903 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 614 264 5 35 chr3 35650957 35651158 -191873420 - L2 LINE L2 -8 3305 3111 278 67 22 0 chr3 35651179 35651224 -191873354 + (TG)n Simple_repeat Simple_repeat 2 47 0 1817 47 0 5 chr3 35651473 35651688 -191872890 - AluY SINE Alu 0 311 98 285 247 151 38 chr3 35651994 35652180 -191872398 - MLT1F LTR MaLR -66 501 295 291 289 187 18 chr3 35652585 35652751 -191871827 + MIR SINE MIR 20 213 -49 366 268 33 46 chr3 35652834 35652987 -191871591 - MLT1J LTR MaLR -8 503 353 1403 214 21 122 chr3 35652991 35653785 -191870793 - L1MD3 LINE L1 -833 7162 6311 1580 213 27 60 chr3 35653805 35654539 -191870039 - L1ME LINE L1 -594 5572 4857 366 196 41 0 chr3 35654619 35654716 -191869862 + MER20B DNA MER1_type 585 685 -98 1343 293 71 31 chr3 35654809 35654952 -191869626 - L2 LINE L2 -512 2802 2666 2315 113 0 0 chr3 35654952 35655254 -191869324 + AluSx SINE Alu 2 303 -9 1343 293 71 31 chr3 35655254 35655659 -191868919 - L2 LINE L2 -648 2666 2232 430 265 56 6 chr3 35655679 35655841 -191868737 - HAL1 LINE L1 -1224 1283 1114 2339 131 15 35 chr3 35656115 35656513 -191868065 + MLT1B LTR MaLR 1 390 0 2281 103 0 34 chr3 35656923 35657243 -191867335 - AluSg SINE Alu 0 310 2 2418 83 0 10 chr3 35657436 35657748 -191866830 - AluSp SINE Alu -4 309 1 21 0 0 0 chr3 35657932 35657953 -191866625 + AT_rich Low_complexity Low_complexity 1 21 0 190 400 0 9 chr3 35658085 35658190 -191866388 - MER5A DNA MER1_type -4 185 82 29 0 0 0 chr3 35658462 35658491 -191866087 + AT_rich Low_complexity Low_complexity 1 29 0 406 343 60 10 chr3 35659354 35659555 -191865023 + MIR SINE MIR 18 228 -34 204 295 107 67 chr3 35659549 35659773 -191864805 - L2 LINE L2 -535 2779 2547 * 2249 107 3 19 chr3 35660582 35660899 -191863679 - AluSx SINE Alu 0 312 1 1077 83 0 0 chr3 35660901 35661033 -191863545 - AluSq/x SINE Alu -181 132 1 807 272 58 9 chr3 35661681 35661905 -191862673 - MIR SINE MIR 0 262 28 354 45 0 0 chr3 35662425 35662469 -191862109 + (TG)n Simple_repeat Simple_repeat 2 45 0 1346 221 103 25 chr3 35662774 35663209 -191861369 + MER20B DNA MER1_type 293 761 -22 207 69 0 0 chr3 35663715 35663744 -191860834 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 35664112 35664140 -191860438 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 35664470 35664498 -191860080 + AT_rich Low_complexity Low_complexity 1 28 0 243 188 21 0 chr3 35664515 35664563 -191860015 + MER91 DNA MER1_type 79 127 -63 28 0 0 0 chr3 35664989 35665017 -191859561 + AT_rich Low_complexity Low_complexity 1 28 0 693 261 70 60 chr3 35666039 35666323 -191858255 + MLT1J LTR MaLR 223 509 -2 430 279 90 0 chr3 35668149 35668260 -191856318 + L2 LINE L2 3190 3310 -3 669 191 30 15 chr3 35668857 35668988 -191855590 - FLAM_A SINE Alu 0 133 1 231 234 130 0 chr3 35669006 35669083 -191855495 - L1ME LINE L1 -411 5710 5624 423 278 106 21 chr3 35669133 35669698 -191854880 - L1ME LINE L1 -753 5393 4908 1454 211 148 94 chr3 35669745 35670639 -191853939 - LTR1B LTR ERV1 0 1020 3 180 0 0 0 chr3 35671625 35671645 -191852933 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 408 378 13 0 chr3 35671907 35672063 -191852515 - MIR3 SINE MIR -13 195 38 264 217 58 14 chr3 35672280 35672349 -191852229 + MIR SINE MIR 179 250 -12 290 135 19 0 chr3 35672352 35672404 -191852174 + L2 LINE L2 3261 3313 0 261 224 144 56 chr3 35673009 35673134 -191851444 + MIR SINE MIR 49 184 -78 1803 136 40 22 chr3 35673270 35673593 -191850985 + L1MB2 LINE L1 5750 6078 -93 994 171 39 17 chr3 35673829 35674010 -191850568 - MER20B DNA MER1_type -17 202 18 499 297 19 48 chr3 35674542 35674746 -191849832 - MIR SINE MIR -47 215 15 511 284 60 33 chr3 35675647 35675706 -191848872 + MER5A DNA MER1_type 2 58 -131 2299 119 0 6 chr3 35675706 35676017 -191848561 - AluSx SINE Alu -3 309 1 511 284 60 33 chr3 35676017 35676140 -191848438 + MER5A DNA MER1_type 58 189 0 1350 165 34 49 chr3 35676223 35676551 -191848027 + MER33 DNA MER1_type 2 324 0 863 252 25 41 chr3 35676650 35676892 -191847686 - MIR SINE MIR -6 256 19 806 188 16 172 chr3 35679080 35679266 -191845312 + MLT1E LTR MaLR 1 162 -431 269 175 70 0 chr3 35679246 35679303 -191845275 + MLT1E LTR MaLR 119 179 -414 * 629 244 25 45 chr3 35679391 35679496 -191845082 + LTR16C LTR ERVL 286 387 -104 2017 133 128 13 chr3 35679496 35679880 -191844698 + MSTA LTR MaLR 1 428 0 629 244 25 45 chr3 35679880 35679975 -191844603 + LTR16C LTR ERVL 387 482 -9 670 157 0 90 chr3 35681706 35681840 -191842738 + MER7A DNA MER2_type 1 120 -226 281 306 92 13 chr3 35682462 35682646 -191841932 + MIR3 SINE MIR 3 207 -55 41 66 0 0 chr3 35682656 35682732 -191841846 + AT_rich Low_complexity Low_complexity 1 76 0 1425 141 14 0 chr3 35682874 35683087 -191841491 - Tigger3(Golem) DNA MER2_type 0 3029 2814 244 361 8 33 chr3 35683530 35683652 -191840926 - MIR3 SINE MIR -76 132 14 505 248 29 0 chr3 35683734 35683839 -191840739 + MER81 DNA DNA 3 110 -4 531 226 92 6 chr3 35683861 35684025 -191840553 + MER5B DNA MER1_type 1 178 0 300 27 0 0 chr3 35684139 35684176 -191840402 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7750 23 0 3 chr3 35684429 35685503 -191839075 - L1PA3 LINE L1 0 6155 5083 378 0 0 0 chr3 35686438 35686480 -191838098 + (TG)n Simple_repeat Simple_repeat 2 43 0 276 322 50 0 chr3 35686867 35686988 -191837590 + LTR67 LTR ERVL 380 506 -51 201 245 0 0 chr3 35687029 35687078 -191837500 + A-rich Low_complexity Low_complexity 2 50 0 202 282 254 9 chr3 35688374 35688484 -191836094 + MIR SINE MIR 6 142 -120 575 151 84 0 chr3 35689325 35689444 -191835134 - L1MA9 LINE L1 -38 6274 6146 201 234 78 31 chr3 35689540 35689604 -191834974 - MER5A DNA MER1_type 0 189 123 11247 177 20 51 chr3 35689831 35694821 -191829757 - L1M1 LINE L1 -744 6821 1675 1899 144 0 21 chr3 35694821 35695105 -191829473 + AluSq SINE Alu 1 278 -35 333 0 0 0 chr3 35695106 35695143 -191829435 + (TC)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr3 35695142 35695167 -191829411 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 11247 177 20 51 chr3 35695143 35696323 -191828255 - L1M1 LINE L1 -5889 1676 321 336 153 0 0 chr3 35696323 35696382 -191828196 + Alu SINE Alu 241 299 -2 1947 113 62 0 chr3 35696660 35696952 -191827626 + AluSx SINE Alu 1 310 -2 1195 299 127 37 chr3 35696956 35697984 -191826594 + HAL1 LINE L1 1063 2183 -324 1791 144 56 3 chr3 35698162 35698447 -191826131 + AluSq SINE Alu 1 300 -13 486 266 58 44 chr3 35698448 35698722 -191825856 + L1MC/D LINE L1 3079 3356 -2790 752 45 99 13 chr3 35699023 35699246 -191825332 + CT-rich Low_complexity Low_complexity 1 242 0 615 171 11 48 chr3 35699261 35699448 -191825130 + CT-rich Low_complexity Low_complexity 1 180 0 1436 206 40 0 chr3 35699448 35699744 -191824834 - AluJo SINE Alu -4 308 1 342 259 120 120 chr3 35699906 35700366 -191824212 + L1MC/D LINE L1 3986 4445 -1701 277 244 52 17 chr3 35700408 35700523 -191824055 + L1MC/D LINE L1 4478 4596 -1550 692 264 68 55 chr3 35700542 35700852 -191823726 + L2 LINE L2 2984 3297 -16 22 35 0 0 chr3 35700985 35701014 -191823564 + AT_rich Low_complexity Low_complexity 1 29 0 6763 150 24 2 chr3 35701144 35703097 -191821481 - L1PA11 LINE L1 -2 6172 4186 265 299 32 19 chr3 35703099 35703256 -191821322 + L1MC/D LINE L1 4678 4836 -1310 183 221 88 15 chr3 35704099 35704167 -191820411 + L3 LINE CR1 1380 1452 -125 2351 133 42 28 chr3 35704191 35704618 -191819960 - L1MC1 LINE L1 0 6333 5901 223 284 0 68 chr3 35704639 35704727 -191819851 + MIR SINE MIR 67 148 -114 964 206 22 0 chr3 35705104 35705288 -191819290 + MLT1B LTR MaLR 1 188 -202 331 196 0 0 chr3 35705288 35705344 -191819234 + MLT1B LTR MaLR 333 388 -2 240 330 123 9 chr3 35705388 35705494 -191819084 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 35706026 35706179 -191818399 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 35706260 35706532 -191818046 + L1MC/D LINE L1 5392 5676 -2132 1750 133 43 7 chr3 35706722 35707022 -191817556 - AluSx SINE Alu -1 311 1 749 234 23 0 chr3 35707562 35707737 -191816841 + MLT1B LTR MaLR 10 188 -202 311 196 0 0 chr3 35707737 35707793 -191816785 + MLT1B LTR MaLR 333 388 -2 241 321 123 9 chr3 35707837 35707943 -191816635 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 35708475 35708628 -191815950 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 35708709 35708981 -191815597 + L1MC/D LINE L1 5392 5676 -2132 2086 115 30 0 chr3 35709171 35709466 -191815112 - AluSx SINE Alu -8 304 1 276 111 0 0 chr3 35709888 35709933 -191814645 + (TC)n Simple_repeat Simple_repeat 1 45 0 237 215 11 32 chr3 35709934 35710020 -191814558 + (TA)n Simple_repeat Simple_repeat 2 87 -5 303 28 0 0 chr3 35710020 35710056 -191814522 + (CA)n Simple_repeat Simple_repeat 1 36 0 237 215 11 32 chr3 35710056 35710062 -191814516 + (TA)n Simple_repeat Simple_repeat 87 92 0 189 0 0 0 chr3 35711029 35711050 -191813528 + (A)n Simple_repeat Simple_repeat 1 21 0 2264 107 0 10 chr3 35713471 35713771 -191810807 - AluSx SINE Alu -15 297 1 248 302 0 0 chr3 35713812 35713875 -191810703 - L2 LINE L2 -5 3308 3246 645 278 222 10 chr3 35713973 35714261 -191810317 + L2 LINE L2 2500 2848 -466 295 124 360 11 chr3 35714261 35714350 -191810228 + MER39 LTR ERV1 1 120 -587 * 1408 144 29 47 chr3 35714335 35714572 -191810006 + MER39 LTR ERV1 264 497 -210 2036 116 7 7 chr3 35714572 35714865 -191809713 - AluSq SINE Alu -20 293 1 1408 144 29 47 chr3 35714865 35714905 -191809673 + MER39 LTR ERV1 497 536 -171 1011 123 0 12 chr3 35714954 35715116 -191809462 + MER39 LTR ERV1 544 703 -4 583 342 74 0 chr3 35715121 35715311 -191809267 + L2 LINE L2 2851 3054 -259 233 236 0 0 chr3 35715546 35715601 -191808977 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 819 128 0 0 chr3 35715607 35715748 -191808830 + (CAATA)n Simple_repeat Simple_repeat 1 141 0 1739 139 14 0 chr3 35715748 35716035 -191808543 + AluSp SINE Alu 2 292 -21 243 128 0 0 chr3 35716035 35716077 -191808501 + (CATA)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr3 35716083 35716112 -191808466 + AT_rich Low_complexity Low_complexity 1 29 0 1606 115 26 43 chr3 35716113 35716417 -191808161 + AluSg SINE Alu 1 299 -11 216 204 0 0 chr3 35716456 35716500 -191808078 + A-rich Low_complexity Low_complexity 1 44 0 1156 260 84 34 chr3 35719758 35719786 -191804792 + L2 LINE L2 2757 2782 -531 1586 119 153 4 chr3 35719786 35719907 -191804671 + AluSx SINE Alu 1 103 -209 228 67 0 0 chr3 35719907 35719937 -191804641 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1586 119 153 4 chr3 35719937 35720083 -191804495 + AluSx SINE Alu 103 308 -4 1156 260 84 34 chr3 35720083 35720591 -191803987 + L2 LINE L2 2782 3312 -1 348 286 114 29 chr3 35720733 35720873 -191803705 + L2 LINE L2 3162 3313 0 189 0 0 0 chr3 35721039 35721060 -191803518 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 302 0 0 chr3 35722571 35722687 -191801891 + C-rich Low_complexity Low_complexity 1 116 0 4541 204 27 33 chr3 35723379 35725315 -191799263 - L1MD1 LINE L1 -22 6220 4300 197 306 0 0 chr3 35726560 35726609 -191797969 + L2 LINE L2 3265 3313 0 446 141 24 0 chr3 35727076 35727157 -191797421 + MSTA LTR MaLR 1 83 -345 2165 111 9 15 chr3 35727157 35727499 -191797079 + THE1A LTR MaLR 1 340 -15 1950 150 32 3 chr3 35727497 35727836 -191796742 + MSTA LTR MaLR 80 428 0 * 398 229 175 66 chr3 35728222 35728405 -191796173 + MIR SINE MIR 31 233 -29 251 318 24 0 chr3 35728418 35728503 -191796075 + MIR SINE MIR 104 190 -72 284 224 17 0 chr3 35729936 35729994 -191794584 - L2 LINE L2 0 3272 3214 405 102 0 0 chr3 35730000 35730059 -191794519 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 21 0 0 0 chr3 35730168 35730189 -191794389 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 35730656 35730684 -191793894 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 2008 151 12 54 chr3 35731604 35732009 -191792569 + MLT1B LTR MaLR 1 388 -2 2055 234 141 37 chr3 35732841 35733825 -191790753 - MER97c DNA MER1_type? -3 1087 1 25 65 0 0 chr3 35734085 35734131 -191790447 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 35734170 35734198 -191790380 + AT_rich Low_complexity Low_complexity 1 28 0 719 231 40 71 chr3 35734206 35734530 -191790048 + L1ME3A LINE L1 5848 6161 -9 190 212 91 30 chr3 35734621 35734687 -191789891 + L2 LINE L2 1771 1840 -1474 270 322 119 0 chr3 35735395 35735513 -191789065 - MIR SINE MIR 0 262 131 506 264 40 79 chr3 35738452 35738679 -191785899 - L2 LINE L2 0 3313 3096 449 324 23 7 chr3 35740947 35741095 -191783483 + MIR3 SINE MIR 48 199 -9 23 0 0 0 chr3 35741404 35741427 -191783151 + AT_rich Low_complexity Low_complexity 1 23 0 14380 35 0 0 chr3 35741595 35744101 -191780477 - L1PA3 LINE L1 0 6155 3649 188 206 0 0 chr3 35745086 35745120 -191779458 - MIR SINE MIR -121 87 54 500 265 20 0 chr3 35745142 35745244 -191779334 + MER5A DNA MER1_type 10 113 -76 205 191 0 24 chr3 35745931 35745973 -191778605 + CT-rich Low_complexity Low_complexity 4 44 0 3740 127 82 27 chr3 35747008 35747677 -191776901 + MER50 LTR ERV1 6 711 -23 930 191 0 6 chr3 35747779 35747947 -191776631 + AluJo SINE Alu 1 167 -145 2946 176 0 47 chr3 35748504 35749009 -191775569 + MLT2B3 LTR ERVL 3 479 -75 2140 186 49 7 chr3 35749009 35749418 -191775160 - MSTA LTR MaLR 0 428 3 2946 176 0 47 chr3 35749418 35749491 -191775087 + MLT2B3 LTR ERVL 479 554 0 2282 120 0 0 chr3 35749554 35749862 -191774716 + AluSg SINE Alu 3 310 0 2364 189 36 18 chr3 35749935 35750312 -191774266 + MLT1D LTR MaLR 1 391 -114 2258 183 5 0 chr3 35750312 35750711 -191773867 - MER57A LTR ERV1 0 403 3 2364 189 36 18 chr3 35750711 35750829 -191773749 + MLT1D LTR MaLR 391 505 0 2285 100 3 28 chr3 35751051 35751371 -191773207 + AluSx SINE Alu 1 312 0 381 249 86 32 chr3 35751420 35751641 -191772937 + MER46C DNA MER2_type 26 258 -80 2032 128 7 7 chr3 35752568 35752897 -191771681 + AluSc SINE Alu 1 309 0 2041 118 3 17 chr3 35753010 35753323 -191771255 - AluSq SINE Alu 0 309 1 2133 171 8 3 chr3 35754484 35754847 -191769731 + MLT1A1 LTR MaLR 1 365 0 348 293 78 9 chr3 35754896 35755012 -191769566 + L2 LINE L2 3188 3311 -2 199 0 65 0 chr3 35755073 35755104 -191769474 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 236 28 38 chr3 35755106 35755533 -191769045 + HAL1 LINE L1 1374 1796 -711 336 299 85 29 chr3 35755614 35755955 -191768623 + HAL1 LINE L1 1903 2262 -245 1566 143 36 8 chr3 35756059 35756311 -191768267 + AluSx SINE Alu 47 305 -7 1448 105 4 116 chr3 35757774 35758101 -191766477 - AluSc SINE Alu 0 330 35 253 270 0 0 chr3 35758102 35758169 -191766409 - MIR SINE MIR -57 151 84 308 261 118 59 chr3 35758240 35758359 -191766219 - L2 LINE L2 0 3272 3147 384 369 38 0 chr3 35758405 35758562 -191766016 - L2 LINE L2 -437 2877 2715 255 319 11 11 chr3 35759479 35759570 -191765008 + GA-rich Low_complexity Low_complexity 2 92 0 216 338 0 0 chr3 35760100 35760174 -191764404 + MIR SINE MIR 186 259 -3 431 289 19 19 chr3 35760274 35760430 -191764148 - MIR3 SINE MIR -23 185 30 324 228 16 25 chr3 35760780 35760909 -191763669 - L1MC4 LINE L1 -1339 6983 1986 422 338 9 45 chr3 35760968 35761190 -191763388 - L2 LINE L2 -2 3311 3098 462 252 127 20 chr3 35761521 35761725 -191762853 - MIR SINE MIR -25 237 5 885 203 32 46 chr3 35762272 35762489 -191762089 + MER20 DNA MER1_type 1 214 -5 2983 235 70 20 chr3 35762647 35763428 -191761150 + L1MC4a LINE L1 2 883 -5657 315 273 22 14 chr3 35763435 35763574 -191761004 + L1MC4a LINE L1 5422 5561 -979 402 288 7 7 chr3 35764010 35764149 -191760429 - MER117 DNA MER1_type -35 162 24 270 299 110 26 chr3 35764828 35764982 -191759596 + MIR SINE MIR 53 219 -43 1984 255 91 22 chr3 35765189 35765262 -191759316 + L1MC4a LINE L1 5696 5763 -2439 180 0 0 0 chr3 35765262 35765282 -191759296 + (TA)n Simple_repeat Simple_repeat 1 20 0 1984 255 91 22 chr3 35765282 35766020 -191758558 + L1MC4a LINE L1 5763 6563 -1639 359 252 16 57 chr3 35766264 35766387 -191758191 + MER5B DNA MER1_type 71 177 -1 662 277 57 94 chr3 35766444 35766794 -191757784 + L2 LINE L2 2189 2525 -789 1394 175 4 0 chr3 35766911 35767179 -191757399 + L1MA9 LINE L1 6033 6301 -11 1110 286 54 37 chr3 35767295 35768053 -191756525 + L2 LINE L2 2550 3313 0 2437 134 52 45 chr3 35768164 35768476 -191756102 - L1MA9 LINE L1 0 6312 6004 2446 87 14 14 chr3 35768476 35768831 -191755747 + THE1A LTR MaLR 1 355 0 11500 94 15 10 chr3 35768832 35770077 -191754501 + THE1A-int LTR MaLR 2 1259 -321 1926 142 28 3 chr3 35770077 35770359 -191754219 - AluSg SINE Alu -21 289 1 11500 94 15 10 chr3 35770359 35770683 -191753895 + THE1A-int LTR MaLR 1259 1580 0 2180 149 6 8 chr3 35770683 35771039 -191753539 + THE1A LTR MaLR 1 355 0 2437 134 52 45 chr3 35771039 35771239 -191753339 - L1MA9 LINE L1 -307 6005 5793 207 69 0 0 chr3 35771239 35771268 -191753310 + (CA)n Simple_repeat Simple_repeat 2 30 0 255 215 19 9 chr3 35771276 35771383 -191753195 + (TA)n Simple_repeat Simple_repeat 1 108 0 2336 148 48 48 chr3 35771383 35772370 -191752208 - L1MA9 LINE L1 -518 5773 4789 247 273 0 0 chr3 35772370 35772436 -191752142 + L1 LINE L1 4350 4415 -1731 418 163 33 0 chr3 35772750 35772842 -191751736 + T-rich Low_complexity Low_complexity 4 98 0 1761 167 0 4 chr3 35772865 35773141 -191751437 - AluSq SINE Alu -38 275 1 869 222 58 0 chr3 35774177 35774384 -191750194 + MER20 DNA MER1_type 1 219 0 1463 249 83 30 chr3 35775280 35775822 -191748756 - MLT1E2 LTR MaLR 0 626 75 2170 96 10 3 chr3 35775822 35776114 -191748464 + AluY SINE Alu 3 296 -15 1463 249 83 30 chr3 35776114 35776194 -191748384 - MLT1E2 LTR MaLR -551 75 1 1594 181 73 27 chr3 35776199 35776569 -191748009 + MLT1B LTR MaLR 1 387 -3 2851 120 31 5 chr3 35776940 35777357 -191747221 + MSTA LTR MaLR 1 428 0 9271 153 34 16 chr3 35777358 35778979 -191745599 + MSTA-int LTR MaLR 2 1651 0 2623 141 29 7 chr3 35778979 35779398 -191745180 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr3 35779713 35779734 -191744844 + AT_rich Low_complexity Low_complexity 1 21 0 270 160 0 0 chr3 35780894 35780944 -191743634 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 837 236 198 0 chr3 35782334 35782546 -191742032 - MIR SINE MIR -1 261 8 342 0 0 0 chr3 35782591 35782629 -191741949 + (TG)n Simple_repeat Simple_repeat 2 39 0 2299 121 0 0 chr3 35783064 35783433 -191741145 - AluSq SINE Alu 0 369 1 271 379 26 0 chr3 35784323 35784439 -191740139 + L2 LINE L2 3153 3271 -1 193 200 0 0 chr3 35784765 35784800 -191739778 + MIR SINE MIR 109 143 -65 2178 152 0 0 chr3 35785697 35786007 -191738571 + AluSx SINE Alu 1 310 -2 321 282 106 17 chr3 35786127 35786310 -191738268 + L1MC/D LINE L1 2290 2527 -3901 265 327 25 35 chr3 35786355 35786557 -191738021 + L1MC/D LINE L1 5560 5759 -2285 22 0 0 0 chr3 35786900 35786922 -191737656 + AT_rich Low_complexity Low_complexity 1 22 0 5157 260 60 45 chr3 35788172 35789291 -191735287 + L1ME1 LINE L1 1093 2194 -4370 5127 142 23 5 chr3 35789291 35790645 -191733933 - L1PA16 LINE L1 -10 6156 4774 5157 260 60 45 chr3 35790645 35792054 -191732524 + L1ME1 LINE L1 2194 3580 -2984 542 267 118 20 chr3 35792054 35792249 -191732329 - MER58C DNA MER1_type 0 215 2 5157 260 60 45 chr3 35792249 35792840 -191731738 + L1ME1 LINE L1 3580 4161 -2403 2311 86 3 7 chr3 35792840 35793144 -191731434 + AluY SINE Alu 1 303 -8 5157 260 60 45 chr3 35793144 35794406 -191730172 + L1ME1 LINE L1 4161 5766 -798 585 141 0 0 chr3 35794408 35794493 -191730085 + AluJb SINE Alu 31 115 -197 621 173 8 0 chr3 35794507 35794634 -191729944 + L1ME1 LINE L1 5764 5891 -693 291 231 0 15 chr3 35794675 35794740 -191729838 + L1ME1 LINE L1 5986 6049 -533 261 109 0 0 chr3 35794740 35794786 -191729792 + (CA)n Simple_repeat Simple_repeat 2 47 0 1229 215 25 41 chr3 35794822 35795190 -191729388 + L1ME1 LINE L1 6137 6498 -86 2190 108 3 0 chr3 35796418 35796715 -191727863 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr3 35796812 35796842 -191727736 + AT_rich Low_complexity Low_complexity 1 30 0 419 250 66 13 chr3 35797282 35797434 -191727144 + MER103 DNA DNA 7 166 0 704 159 0 0 chr3 35798030 35798137 -191726441 + FLAM_C SINE Alu 12 118 -25 186 43 0 0 chr3 35798142 35798165 -191726413 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2284 113 3 3 chr3 35798313 35798623 -191725955 + AluSg SINE Alu 1 310 0 215 305 0 24 chr3 35799180 35799262 -191725316 + MIR SINE MIR 172 251 -11 198 191 0 0 chr3 35799278 35799320 -191725258 + (CTA)n Simple_repeat Simple_repeat 1 42 0 417 263 134 53 chr3 35799387 35799558 -191725020 + MER5A DNA MER1_type 4 188 -1 272 297 0 0 chr3 35799769 35799843 -191724735 + L2 LINE L2 2290 2363 -951 409 288 34 17 chr3 35799848 35800062 -191724516 - LTR16A1 LTR ERVL 0 457 279 442 295 154 6 chr3 35800075 35800231 -191724347 + MER5A DNA MER1_type 11 189 0 264 296 22 84 chr3 35800263 35800442 -191724136 - LTR16C LTR ERVL -242 249 82 218 234 21 0 chr3 35801045 35801092 -191723486 + L2 LINE L2 3264 3311 -2 549 51 0 0 chr3 35801408 35801486 -191723092 - L1PA2 LINE L1 0 6155 6078 188 119 0 24 chr3 35801752 35801794 -191722784 + (TC)n Simple_repeat Simple_repeat 2 42 0 360 296 73 59 chr3 35802501 35802672 -191721906 - MIR SINE MIR 0 262 89 465 303 78 7 chr3 35802672 35802814 -191721764 + MIR SINE MIR 2 153 -109 1055 141 0 0 chr3 35802818 35802995 -191721583 - MER6A DNA MER2_type 0 605 429 6838 79 6 0 chr3 35802995 35804153 -191720425 + L1P3 LINE L1 4364 5529 -625 26232 34 17 2 chr3 35804156 35809689 -191714889 + L1P1 LINE L1 2 5657 -498 852 86 0 0 chr3 35809918 35810034 -191714544 - L1PA8 LINE L1 -2 6170 6055 2078 177 11 6 chr3 35810034 35810395 -191714183 - MER6A DNA MER2_type -172 433 71 228 208 226 0 chr3 35810418 35810471 -191714107 + MIR SINE MIR 154 218 -44 185 345 82 12 chr3 35810652 35810823 -191713755 + L3b LINE CR1 1213 1395 -188 1688 249 116 0 chr3 35810844 35811329 -191713249 + MLT1H LTR MaLR 1 541 -8 406 359 67 36 chr3 35812390 35812984 -191711594 - L2 LINE L2 -1 3271 2664 2099 123 3 3 chr3 35813173 35813474 -191711104 - AluSx SINE Alu -11 301 1 301 268 12 12 chr3 35813482 35813564 -191711014 + MER5A DNA MER1_type 56 137 -52 1168 199 71 22 chr3 35813965 35814287 -191710291 + MER58B DNA MER1_type 4 341 0 22 0 0 0 chr3 35814386 35814408 -191710170 + AT_rich Low_complexity Low_complexity 1 22 0 190 267 0 0 chr3 35815520 35815565 -191709013 - L2 LINE L2 -2 3311 3267 303 286 20 0 chr3 35815621 35815719 -191708859 - MLT1J2 LTR MaLR -5 445 346 417 235 26 17 chr3 35815816 35815931 -191708647 - MLT1J2 LTR MaLR -334 116 1 306 222 44 11 chr3 35816165 35816255 -191708323 - MIR SINE MIR -66 196 104 734 224 92 9 chr3 35816656 35816884 -191707694 + L1ME3A LINE L1 5422 5668 -496 234 0 0 0 chr3 35816889 35816915 -191707663 + (CA)n Simple_repeat Simple_repeat 1 26 0 2021 199 24 49 chr3 35816926 35817458 -191707120 - Charlie1b DNA MER1_type -4 519 1 356 335 106 13 chr3 35817506 35817742 -191706836 + L1ME3A LINE L1 5683 5940 -230 1485 40 0 0 chr3 35818849 35819026 -191705552 - L1PA3 LINE L1 -3 6152 5976 1223 198 115 54 chr3 35819269 35819642 -191704936 + MSTD LTR MaLR 1 396 0 313 265 226 57 chr3 35820519 35820714 -191703864 + MLT1H1 LTR MaLR 65 290 -265 440 154 5 0 chr3 35821027 35821115 -191703463 + MLT1H1 LTR MaLR 482 555 0 2128 121 0 0 chr3 35823531 35823863 -191700715 - AluSx SINE Alu 0 332 1 973 203 158 0 chr3 35824052 35824293 -191700285 - LTR16C LTR ERVL 0 491 213 208 365 20 54 chr3 35824696 35824844 -191699734 + L2 LINE L2 2909 3051 -221 458 293 110 10 chr3 35825107 35825314 -191699264 + MIR SINE MIR 20 246 -16 703 237 57 34 chr3 35825432 35825609 -191698969 - MER5A DNA MER1_type -3 186 6 703 223 13 25 chr3 35825647 35825804 -191698774 - MER5B DNA MER1_type -18 160 6 583 208 164 19 chr3 35825838 35825997 -191698581 + MER5A DNA MER1_type 8 189 0 249 252 431 8 chr3 35826927 35827050 -191697528 + MER5A DNA MER1_type 9 183 -6 246 224 41 0 chr3 35827064 35827113 -191697465 + MER5B DNA MER1_type 1 51 -127 309 143 0 0 chr3 35827263 35827305 -191697273 - 5S rRNA rRNA -79 42 1 24 0 0 0 chr3 35827637 35827661 -191696917 + AT_rich Low_complexity Low_complexity 1 24 0 679 224 107 24 chr3 35827988 35828193 -191696385 - MER58A DNA MER1_type -1 223 2 324 325 124 0 chr3 35829542 35829711 -191694867 - MIR SINE MIR -65 197 8 293 149 0 0 chr3 35830113 35830160 -191694418 - MER94 DNA DNA -77 57 11 184 250 83 0 chr3 35832311 35832359 -191692219 + MIR SINE MIR 45 96 -112 222 299 0 0 chr3 35832479 35832546 -191692032 - L2 LINE L2 -1358 1956 1890 255 31 0 0 chr3 35833151 35833183 -191691395 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr3 35833189 35833231 -191691347 + AT_rich Low_complexity Low_complexity 1 42 0 250 143 32 32 chr3 35833413 35833476 -191691102 + CT-rich Low_complexity Low_complexity 2 64 0 283 306 63 9 chr3 35833752 35833863 -191690715 - MIR SINE MIR -65 197 81 405 58 0 0 chr3 35834049 35834101 -191690477 + (TG)n Simple_repeat Simple_repeat 2 53 0 269 200 100 0 chr3 35834101 35834161 -191690417 - MER112 DNA MER1_type -194 66 1 1893 173 61 6 chr3 35834357 35834703 -191689875 + MLT1A1 LTR MaLR 1 365 0 213 121 0 0 chr3 35835553 35835586 -191688992 + (GA)n Simple_repeat Simple_repeat 2 34 0 1815 148 50 28 chr3 35835668 35836025 -191688553 + MLT1A1 LTR MaLR 1 365 0 324 251 220 26 chr3 35836465 35836656 -191687922 + MLT1H1 LTR MaLR 48 278 -312 1774 141 30 7 chr3 35836660 35836965 -191687613 - L1MC3 LINE L1 -149 7636 7325 887 201 47 23 chr3 35836961 35837548 -191687030 - L1M4 LINE L1 -1137 5820 4941 * 3649 141 60 43 chr3 35837549 35837564 -191687014 - LTR8A LTR ERV1 0 727 714 3991 88 18 0 chr3 35837564 35838107 -191686471 + MER41A LTR ERV1 2 554 0 3649 141 60 43 chr3 35838107 35838806 -191685772 - LTR8A LTR ERV1 -13 714 1 5621 230 39 75 chr3 35838806 35839262 -191685316 - L1M4 LINE L1 -2014 4943 4472 3032 57 5 3 chr3 35839262 35839647 -191684931 - L1PA6 LINE L1 -3 6151 5766 5621 230 39 75 chr3 35839647 35839726 -191684852 - L1M4 LINE L1 -2485 4472 4392 2089 156 0 3 chr3 35839726 35840034 -191684544 - AluJb SINE Alu -2 310 4 5621 230 39 75 chr3 35840034 35841710 -191682868 - L1M4 LINE L1 -2565 4392 2658 1542 69 15 0 chr3 35841710 35841914 -191682664 - L1PA5 LINE L1 -3 6151 5945 5621 230 39 75 chr3 35841914 35842703 -191681875 - L1M4 LINE L1 -4299 2658 1842 2178 186 14 30 chr3 35842703 35842905 -191681673 + Tigger2a DNA MER2_type 1 205 -2503 2159 137 0 0 chr3 35842905 35843211 -191681367 - AluSx SINE Alu -6 306 1 2178 186 14 30 chr3 35843211 35843449 -191681129 + Tigger2a DNA MER2_type 205 434 0 5621 230 39 75 chr3 35843449 35844293 -191680285 - L1M4 LINE L1 -5115 1842 1271 214 50 50 0 chr3 35844293 35844333 -191680245 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 5621 230 39 75 chr3 35844333 35844524 -191680054 - L1M4 LINE L1 -5686 1271 1075 252 407 34 0 chr3 35845094 35845212 -191679366 - L2 LINE L2 -6 3266 3145 303 302 38 9 chr3 35845832 35845938 -191678640 + MIR SINE MIR 102 210 -52 192 302 47 47 chr3 35846434 35846540 -191678038 + L2 LINE L2 3145 3250 -22 275 284 138 28 chr3 35846678 35846787 -191677791 - L2 LINE L2 0 3313 3193 44 20 0 0 chr3 35848506 35848557 -191676021 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr3 35849899 35849944 -191674634 + AT_rich Low_complexity Low_complexity 1 45 0 222 118 0 0 chr3 35849995 35850029 -191674549 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6496 115 81 14 chr3 35850089 35851210 -191673368 + Tigger3b DNA MER2_type 2 1197 -34 296 368 26 0 chr3 35852262 35852376 -191672202 - L2 LINE L2 0 3313 3197 772 243 116 45 chr3 35852518 35852941 -191671637 + MLT1L LTR MaLR 59 615 0 234 222 69 14 chr3 35853512 35853584 -191670994 + L1M4c LINE L1 2423 2498 -3886 2056 128 3 7 chr3 35853637 35853933 -191670645 + AluSq SINE Alu 1 295 -18 1193 210 33 47 chr3 35854578 35854854 -191669724 - MSTD LTR MaLR 0 396 125 735 335 70 20 chr3 35855490 35855592 -191668986 - LTR16A LTR ERVL 0 450 355 1441 229 41 33 chr3 35855592 35855985 -191668593 - MSTD LTR MaLR 0 396 1 735 335 70 20 chr3 35855985 35856225 -191668353 - LTR16A LTR ERVL -95 355 91 1067 312 31 48 chr3 35856226 35856438 -191668140 - HERV16 LTR ERVL -2369 2627 2413 1115 186 9 23 chr3 35856438 35856659 -191667919 - MER20 DNA MER1_type -1 218 1 1067 312 31 48 chr3 35856659 35856927 -191667651 - HERV16 LTR ERVL -2583 2413 2155 1976 49 0 8 chr3 35857040 35857284 -191667294 + AluY SINE Alu 66 307 -4 363 193 0 0 chr3 35857285 35857342 -191667236 - MER58 DNA MER1_type -2168 252 196 1719 212 3 8 chr3 35857353 35857716 -191666862 - L1PB4 LINE L1 -4 6152 5790 351 113 0 0 chr3 35857716 35857769 -191666809 + (TA)n Simple_repeat Simple_repeat 1 53 0 1719 212 3 8 chr3 35857769 35857787 -191666791 - L1PB4 LINE L1 -366 5790 5773 1777 149 19 28 chr3 35857784 35858312 -191666266 - L1PB4 LINE L1 -744 5402 5023 198 323 73 89 chr3 35858561 35858809 -191665769 + L2 LINE L2 2512 2755 -559 1438 317 135 33 chr3 35859447 35860608 -191663970 - L2 LINE L2 -246 3067 1793 346 259 266 6 chr3 35861477 35861635 -191662943 - L3 LINE CR1 -2 1575 1377 198 259 0 62 chr3 35862232 35862313 -191662265 + MIR SINE MIR 79 154 -108 2201 119 0 3 chr3 35862995 35863305 -191661273 - AluSg SINE Alu -1 309 1 918 290 37 53 chr3 35863320 35863696 -191660882 - MLT1J1 LTR MaLR -8 438 69 1573 238 70 79 chr3 35864763 35865050 -191659528 + MER20B DNA MER1_type 8 296 -487 224 29 0 29 chr3 35865050 35865084 -191659494 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 666 198 0 0 chr3 35865088 35865204 -191659374 - FLAM_C SINE Alu -17 116 1 1573 238 70 79 chr3 35865204 35865541 -191659037 + MER20B DNA MER1_type 299 631 -152 26 0 0 0 chr3 35866212 35866238 -191658340 + AT_rich Low_complexity Low_complexity 1 26 0 420 298 131 5 chr3 35866481 35866672 -191657906 - LTR33 LTR ERVL -1 520 306 254 319 60 26 chr3 35866733 35866849 -191657729 - LTR33A LTR ERVL -331 192 73 300 272 0 25 chr3 35867171 35867252 -191657326 - L2 LINE L2 -5 3308 3230 269 286 16 0 chr3 35867339 35867402 -191657176 + MLT1K LTR MaLR 141 204 -384 194 237 246 70 chr3 35867690 35867804 -191656774 - MER5A DNA MER1_type -1 188 55 37 62 0 0 chr3 35868127 35868192 -191656386 + AT_rich Low_complexity Low_complexity 1 65 0 493 220 70 85 chr3 35868498 35868698 -191655880 - L2 LINE L2 -10 3303 3107 969 167 30 0 chr3 35868734 35868902 -191655676 + FRAM SINE Alu 1 171 -5 184 0 62 31 chr3 35869321 35869353 -191655225 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 2058 111 7 0 chr3 35870511 35870790 -191653788 + AluY SINE Alu 1 281 -30 306 0 0 0 chr3 35870811 35870845 -191653733 + (TA)n Simple_repeat Simple_repeat 2 35 0 315 326 83 10 chr3 35870845 35871146 -191653432 + L1M4 LINE L1 2484 2806 -3340 319 353 22 7 chr3 35871214 35871353 -191653225 - MIR3 SINE MIR -1 207 67 354 314 89 26 chr3 35871370 35871561 -191653017 + MIR SINE MIR 14 216 -46 1448 203 178 51 chr3 35872238 35872710 -191651868 - MLT1H LTR MaLR -16 533 2 2239 127 3 29 chr3 35872832 35873178 -191651400 + MER1B DNA MER1_type 1 337 0 34 0 0 0 chr3 35873888 35873922 -191650656 + AT_rich Low_complexity Low_complexity 1 34 0 517 56 14 0 chr3 35873922 35873993 -191650585 - L1PA16 LINE L1 -9 6157 6086 3696 99 2 25 chr3 35874164 35874728 -191649850 + L1PB1 LINE L1 5600 6150 -1 21 0 0 0 chr3 35874728 35874749 -191649829 + AT_rich Low_complexity Low_complexity 1 21 0 256 65 87 22 chr3 35876194 35876240 -191648338 - MADE1 DNA Mariner -4 76 28 420 111 0 0 chr3 35876264 35876327 -191648251 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 57 0 0 chr3 35876669 35876704 -191647874 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 35876769 35876791 -191647787 + AT_rich Low_complexity Low_complexity 1 22 0 261 219 57 19 chr3 35876845 35876950 -191647628 + L1MC/D LINE L1 5213 5321 -825 296 300 67 36 chr3 35877040 35877293 -191647285 + L1MC/D LINE L1 5469 5729 -392 341 254 363 7 chr3 35877349 35877563 -191647015 - MLT1G LTR MaLR 0 590 453 1782 166 169 5 chr3 35877563 35877931 -191646647 - MSTA LTR MaLR 0 428 1 341 254 363 7 chr3 35877931 35878011 -191646567 - MLT1G LTR MaLR -137 453 191 230 231 0 0 chr3 35878282 35878334 -191646244 + L1MC/D LINE L1 5860 5911 -1897 11792 175 9 20 chr3 35878455 35880817 -191643761 + L1PA12 LINE L1 1459 4586 -2998 453 132 0 0 chr3 35880817 35880879 -191643699 + L1PA8 LINE L1 6092 6159 -13 2242 110 3 0 chr3 35880940 35881239 -191643339 + AluSx SINE Alu 5 304 -8 301 304 99 35 chr3 35881424 35881595 -191642983 - MLT1J2 LTR MaLR -2 448 267 358 254 19 1 chr3 35881647 35881758 -191642820 - MLT1J2 LTR MaLR -232 177 68 874 249 9 28 chr3 35882013 35882226 -191642352 - MER63A DNA MER1_type 0 210 2 285 345 58 14 chr3 35882370 35882509 -191642069 + MIR3 SINE MIR 37 181 -27 631 254 142 45 chr3 35882824 35883224 -191641354 - MLT1H1 LTR MaLR 0 555 69 516 266 61 41 chr3 35883694 35884187 -191640391 + L1ME LINE L1 5149 5639 -523 285 198 81 99 chr3 35884435 35884546 -191640032 + MER70A LTR ERVL 342 450 -22 260 294 0 0 chr3 35884618 35884686 -191639892 + MLT1J LTR MaLR 94 161 -350 226 318 65 0 chr3 35884655 35884762 -191639816 + MLT1L LTR MaLR 195 308 -307 * 324 347 25 16 chr3 35885055 35885176 -191639402 - MIR SINE MIR -100 162 41 371 395 65 19 chr3 35885196 35885457 -191639121 - L3 LINE CR1 -375 1202 930 1797 179 0 0 chr3 35885463 35885765 -191638813 + AluJo SINE Alu 1 302 -10 488 257 52 29 chr3 35886000 35886136 -191638442 + L2 LINE L2 3175 3313 0 560 336 89 0 chr3 35887875 35888146 -191636432 + L1MC4a LINE L1 5522 5816 -1992 26 0 0 0 chr3 35888363 35888389 -191636189 + AT_rich Low_complexity Low_complexity 1 26 0 409 204 9 18 chr3 35889709 35889822 -191634756 + (TATATG)n Simple_repeat Simple_repeat 5 116 0 282 259 60 65 chr3 35889967 35890152 -191634426 - HAL1 LINE L1 -1 2506 2323 1395 264 105 61 chr3 35890252 35891208 -191633370 - HAL1 LINE L1 -1063 1444 424 295 321 171 7 chr3 35891829 35891969 -191632609 - MIR SINE MIR -72 190 28 229 296 169 35 chr3 35892725 35892897 -191631681 - L2 LINE L2 -4 3309 3115 843 278 71 42 chr3 35893212 35893637 -191630941 - L2 LINE L2 -73 3240 2804 287 327 65 28 chr3 35893741 35893848 -191630730 - L2 LINE L2 -514 2800 2690 10516 52 3 1 chr3 35893848 35895186 -191629392 - L1PA5 LINE L1 -3295 2851 1511 * 11204 45 1 5 chr3 35895173 35896589 -191627989 + L1PA5 LINE L1 2819 4228 -1918 4557 58 5 3 chr3 35896590 35897164 -191627414 + L1PA5 LINE L1 5580 6154 0 235 371 0 11 chr3 35897290 35897379 -191627199 - L3 LINE CR1 -1 1576 1489 267 297 57 27 chr3 35897456 35897598 -191626980 + MIR SINE MIR 3 146 -62 2689 139 21 38 chr3 35897917 35898392 -191626186 - MLT1C LTR MaLR 0 467 1 964 261 138 54 chr3 35898866 35899256 -191625322 + LTR16C LTR ERVL 1 423 -68 212 59 29 0 chr3 35899412 35899446 -191625132 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 50 0 0 chr3 35899675 35899715 -191624863 + AT_rich Low_complexity Low_complexity 1 40 0 308 299 40 84 chr3 35899728 35899979 -191624599 + L1MC4a LINE L1 5822 6061 -1747 1940 139 10 7 chr3 35900334 35900622 -191623956 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr3 35900625 35900652 -191623926 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 758 228 14 7 chr3 35901387 35901532 -191623046 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr3 35901533 35901555 -191623023 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2099 137 42 33 chr3 35901763 35902122 -191622456 + THE1B LTR MaLR 1 362 -2 1046 206 35 27 chr3 35902196 35902674 -191621904 - L1ME3 LINE L1 -1 6161 5567 1791 262 74 32 chr3 35902875 35903375 -191621203 - MLT1G1 LTR MaLR -2 593 73 419 252 79 109 chr3 35903423 35903541 -191621037 - MLT1H1-int LTR MaLR -19 1352 1232 1337 217 85 14 chr3 35903541 35903728 -191620850 - MLT1B LTR MaLR 0 390 218 195 42 0 0 chr3 35903728 35903752 -191620826 + (GA)n Simple_repeat Simple_repeat 2 25 0 1337 217 85 14 chr3 35903752 35903928 -191620650 - MLT1B LTR MaLR -172 218 1 419 252 79 109 chr3 35903928 35904138 -191620440 - MLT1H1-int LTR MaLR -139 1232 1034 250 270 19 120 chr3 35904755 35905014 -191619564 - MLT1H1-int LTR MaLR -827 544 312 327 234 116 33 chr3 35905038 35905194 -191619384 - MLT1H1-int LTR MaLR -1269 102 11 1935 241 41 19 chr3 35905196 35905664 -191618914 - MLT1H1 LTR MaLR -12 543 66 376 272 147 0 chr3 35905838 35905974 -191618604 + MIR SINE MIR 80 235 -27 1908 138 24 17 chr3 35906384 35906681 -191617897 + AluSx SINE Alu 5 303 -9 35 71 0 0 chr3 35906885 35906955 -191617623 + AT_rich Low_complexity Low_complexity 1 70 0 715 287 55 0 chr3 35909236 35909438 -191615140 - MIR SINE MIR -49 213 1 29 28 0 0 chr3 35909578 35909614 -191614964 + AT_rich Low_complexity Low_complexity 1 36 0 223 285 219 7 chr3 35910124 35910261 -191614317 + MIR3 SINE MIR 39 204 -4 518 176 128 39 chr3 35910763 35910915 -191613663 + L1ME1 LINE L1 6011 6334 0 323 290 0 41 chr3 35910988 35911133 -191613445 + L1MC4a LINE L1 5591 5729 -392 930 260 31 0 chr3 35911181 35911408 -191613170 + MIR SINE MIR 13 246 -16 30 59 0 0 chr3 35911536 35911587 -191612991 + AT_rich Low_complexity Low_complexity 1 51 0 227 196 22 0 chr3 35911661 35911707 -191612871 + L1MC4a LINE L1 5891 5937 -1871 320 306 91 27 chr3 35911781 35911967 -191612611 + L1MC4a LINE L1 6067 6264 -1544 204 253 11 21 chr3 35911992 35912087 -191612491 + (TA)n Simple_repeat Simple_repeat 1 94 0 1076 241 56 56 chr3 35912094 35912726 -191611852 + L1MC5 LINE L1 6324 6911 -897 1648 201 55 80 chr3 35912861 35913548 -191611030 + L1MC5 LINE L1 7238 7907 -54 388 288 116 20 chr3 35914660 35914806 -191609772 + L2 LINE L2 3109 3268 -4 1126 150 15 104 chr3 35915069 35915264 -191609314 - Tigger2a DNA MER2_type -2274 444 276 2422 74 3 6 chr3 35915264 35915575 -191609003 - AluY SINE Alu 0 311 2 1126 150 15 104 chr3 35915575 35915639 -191608939 - Tigger2a DNA MER2_type -2442 276 208 610 204 0 61 chr3 35915641 35915773 -191608805 + FLAM_A SINE Alu 1 124 -18 1265 108 19 47 chr3 35915773 35915985 -191608593 - Tigger2a DNA MER2_type -227 207 2 1511 202 20 17 chr3 35916047 35916344 -191608234 + L1M3f LINE L1 10 307 -5021 683 185 144 0 chr3 35916345 35916518 -191608060 + L1M3f LINE L1 1066 1263 -4065 637 219 52 66 chr3 35916524 35916812 -191607766 - L1M1 LINE L1 -4265 3300 3017 5443 186 31 8 chr3 35916827 35918004 -191606574 + L1 LINE L1 3527 4730 -1416 1177 114 6 0 chr3 35918026 35918192 -191606386 + THE1C LTR MaLR 209 375 0 1573 98 18 0 chr3 35918194 35918419 -191606159 + L1MA4 LINE L1 5734 5962 -338 * 12096 207 36 36 chr3 35918411 35921236 -191603342 + L1M3f LINE L1 1362 4214 -2114 1934 126 0 7 chr3 35921236 35921544 -191603034 + AluSg SINE Alu 1 306 0 12096 207 36 36 chr3 35921544 35922571 -191602007 + L1M3f LINE L1 4214 5240 -1088 330 339 34 0 chr3 35922970 35923088 -191601490 - L2 LINE L2 -1 3312 3191 21 0 0 0 chr3 35923090 35923111 -191601467 + AT_rich Low_complexity Low_complexity 1 21 0 1314 307 65 5 chr3 35923472 35923921 -191600657 + L2 LINE L2 2838 3313 0 1174 196 31 68 chr3 35924528 35924854 -191599724 + L1MD2 LINE L1 6036 6349 -10 594 213 104 6 chr3 35925638 35925821 -191598757 + L1MD3 LINE L1 7795 7995 0 454 328 33 83 chr3 35925964 35926205 -191598373 - MIR SINE MIR -14 248 20 2742 135 19 12 chr3 35926259 35926741 -191597837 - L1MA5 LINE L1 -2 6298 5814 1674 224 66 68 chr3 35927646 35928280 -191596298 - L1MC4 LINE L1 -6 8036 7404 1031 218 9 5 chr3 35928287 35928503 -191596075 + L1MC4a LINE L1 7082 7298 -510 199 304 107 9 chr3 35929042 35929154 -191595424 - L2 LINE L2 -9 3304 3182 425 299 64 19 chr3 35929332 35929489 -191595089 - MIR SINE MIR -11 251 88 242 348 36 54 chr3 35929560 35929784 -191594794 - L2 LINE L2 -551 2763 2544 2098 219 52 11 chr3 35930163 35930628 -191593950 + LTR40a LTR ERVL 33 516 -3 2795 143 19 25 chr3 35931426 35931792 -191592786 - L1MC2 LINE L1 -3 6341 5977 2901 9 0 0 chr3 35931792 35932107 -191592471 - AluYb8 SINE Alu -3 315 1 2795 143 19 25 chr3 35932107 35932259 -191592319 - L1MC2 LINE L1 -367 5977 5826 2134 105 18 0 chr3 35932259 35932561 -191592017 - AluSx SINE Alu 0 307 1 279 0 0 0 chr3 35932561 35932592 -191591986 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1142 171 63 0 chr3 35932597 35932802 -191591776 - L1MC2 LINE L1 -578 5755 5538 198 0 0 0 chr3 35932860 35932882 -191591696 + (TG)n Simple_repeat Simple_repeat 2 23 0 1492 191 144 49 chr3 35932941 35933386 -191591192 + MLT1D LTR MaLR 1 487 -18 2567 167 31 29 chr3 35933492 35934014 -191590564 + L1MB7 LINE L1 5655 6177 -7 692 323 58 15 chr3 35934298 35934623 -191589955 - MLT1I LTR MaLR -66 343 5 1584 216 116 15 chr3 35934624 35935082 -191589496 + MLT1D LTR MaLR 2 505 0 202 170 57 19 chr3 35935716 35935769 -191588809 + MIR3 SINE MIR 116 170 -38 365 111 32 0 chr3 35935909 35935972 -191588606 + CT-rich Low_complexity Low_complexity 4 68 0 1396 165 28 35 chr3 35935972 35936227 -191588351 - AluJo SINE Alu -59 253 1 1511 252 74 19 chr3 35936488 35937239 -191587339 + L2 LINE L2 2517 3313 0 201 74 0 0 chr3 35937248 35937275 -191587303 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1638 182 0 4 chr3 35937281 35937556 -191587022 - AluJo SINE Alu -38 274 1 579 244 145 16 chr3 35937566 35937759 -191586819 - MLT1L LTR MaLR -56 559 342 361 288 18 27 chr3 35937774 35937885 -191586693 - L2 LINE L2 -2 3311 3202 1548 193 0 0 chr3 35937888 35938147 -191586431 - AluJb SINE Alu -53 259 1 249 226 155 24 chr3 35938147 35938231 -191586347 - MLT1L LTR MaLR -316 299 205 2152 113 0 3 chr3 35939394 35939678 -191584900 + AluSx SINE Alu 13 295 -17 207 308 64 13 chr3 35939679 35939757 -191584821 + MIR SINE MIR 49 130 -78 543 249 81 11 chr3 35940566 35940751 -191583827 + Charlie8 DNA MER1_type 67 264 -2153 333 238 45 104 chr3 35941224 35941493 -191583085 + MER112 DNA MER1_type 1 253 -3 16001 129 39 23 chr3 35941785 35942200 -191582378 + Tigger2 DNA MER2_type 13 420 -2298 1993 118 82 28 chr3 35942200 35942556 -191582022 - THE1C LTR MaLR 0 375 1 16001 129 39 23 chr3 35942556 35943061 -191581517 + Tigger2 DNA MER2_type 420 915 -1803 1558 211 20 3 chr3 35943061 35943359 -191581219 + AluJb SINE Alu 1 303 -9 16001 129 39 23 chr3 35943359 35945099 -191579479 + Tigger2 DNA MER2_type 915 2718 0 732 277 176 44 chr3 35945145 35945672 -191578906 + MLT1L LTR MaLR 19 615 0 274 322 26 9 chr3 35945920 35946035 -191578543 - L2 LINE L2 -5 3267 3151 269 194 81 16 chr3 35947120 35947182 -191577396 - L2 LINE L2 0 3313 3248 2063 129 0 20 chr3 35947416 35947719 -191576859 + AluSx SINE Alu 1 297 -15 2378 109 3 0 chr3 35948334 35948646 -191575932 + AluSp SINE Alu 1 313 0 650 298 11 6 chr3 35949596 35949777 -191574801 + LTR33 LTR ERVL 3 184 -337 1653 208 64 3 chr3 35949866 35950256 -191574322 - Charlie1b DNA MER1_type -86 437 24 927 229 105 31 chr3 35950276 35950534 -191574044 + LTR33 LTR ERVL 194 470 -51 2291 248 38 23 chr3 35950551 35951127 -191573451 + MLT1E LTR MaLR 2 586 -7 2007 236 86 162 chr3 35951420 35952411 -191572167 - L2 LINE L2 0 3313 2297 943 188 14 81 chr3 35952411 35952634 -191571944 - MER20 DNA MER1_type -11 208 1 2007 236 86 162 chr3 35952634 35953307 -191571271 - L2 LINE L2 -1016 2297 1574 801 266 7 13 chr3 35953522 35953794 -191570784 + LTR16C LTR ERVL 187 491 0 396 152 229 0 chr3 35954411 35954516 -191570062 - MIR SINE MIR -2 260 132 5046 104 142 124 chr3 35954580 35956134 -191568444 - pTR5 LTR ERV1 0 2438 375 1954 97 4 11 chr3 35956148 35956416 -191568162 - AluSc SINE Alu 0 309 44 462 314 55 90 chr3 35956464 35956657 -191567921 + L2 LINE L2 2770 2968 -304 2093 195 108 0 chr3 35956657 35957113 -191567465 + MLT1D LTR MaLR 1 505 0 462 314 55 90 chr3 35957113 35957436 -191567142 + L2 LINE L2 2968 3270 -2 6714 143 3 12 chr3 35957567 35958612 -191565966 + L1P3 LINE L1 1 1035 -4840 414 209 109 18 chr3 36008639 36008749 -191515829 + L2 LINE L2 3193 3312 -1 26 50 0 0 chr3 36009004 36009044 -191515534 + AT_rich Low_complexity Low_complexity 1 40 0 420 296 70 0 chr3 36009180 36009295 -191515283 - MIR SINE MIR -124 138 16 354 45 0 0 chr3 36010005 36010049 -191514529 + (CA)n Simple_repeat Simple_repeat 2 45 0 3738 217 28 13 chr3 36010656 36011585 -191512993 + L1 LINE L1 3233 4175 -1971 1442 207 58 5 chr3 36012012 36012394 -191512184 + L1 LINE L1 4160 4561 -1585 1869 168 3 0 chr3 36012395 36012692 -191511886 + AluSx SINE Alu 1 298 -14 991 235 14 0 chr3 36012800 36013017 -191511561 + MLT-int LTR MaLR 517 736 -999 347 259 176 0 chr3 36013102 36013233 -191511345 - HsTC2 DNA Tc2 -1742 156 3 1755 189 3 6 chr3 36013447 36013759 -191510819 - AluJo SINE Alu 0 312 2 205 289 105 0 chr3 36014080 36014156 -191510422 - L2 LINE L2 0 3272 3189 * 219 246 123 0 chr3 36014153 36014218 -191510360 - MIR SINE MIR -98 164 92 22 0 0 0 chr3 36014326 36014348 -191510230 + AT_rich Low_complexity Low_complexity 1 22 0 2905 76 0 13 chr3 36015803 36016183 -191508395 + THE1C LTR MaLR 1 375 0 2012 159 39 29 chr3 36016309 36016693 -191507885 + MLT1B LTR MaLR 3 390 0 1773 146 23 32 chr3 36016980 36017288 -191507290 - THE1C LTR MaLR 0 375 71 28398 81 16 3 chr3 36017470 36021805 -191502773 - HERVL-A2 LTR ERVL -1217 4437 1 360 71 0 36 chr3 36021805 36021861 -191502717 - MLT2A2 LTR ERVL 0 453 400 185 62 0 31 chr3 36021866 36021898 -191502680 + (TA)n Simple_repeat Simple_repeat 2 32 0 3312 196 50 13 chr3 36021948 36023337 -191501241 + L1M4c LINE L1 1910 3345 -3037 5577 145 19 18 chr3 36023458 36024403 -191500175 - L1M4c LINE L1 -5421 963 18 32 57 0 0 chr3 36024735 36024788 -191499790 + AT_rich Low_complexity Low_complexity 1 53 0 495 229 0 37 chr3 36025774 36025883 -191498695 + AluJo SINE Alu 118 222 -90 246 62 0 0 chr3 36025891 36025923 -191498655 + (A)n Simple_repeat Simple_repeat 1 32 0 2363 80 0 3 chr3 36026447 36026759 -191497819 + AluY SINE Alu 1 311 0 255 319 79 65 chr3 36028366 36028449 -191496129 - MIR SINE MIR -32 230 150 2197 104 37 0 chr3 36028449 36028748 -191495830 - AluSx SINE Alu -2 310 1 255 319 79 65 chr3 36028748 36028880 -191495698 - MIR SINE MIR -112 150 12 197 297 126 63 chr3 36028896 36029071 -191495507 + L3 LINE CR1 1303 1488 -89 270 56 0 0 chr3 36029104 36029140 -191495438 + (TG)n Simple_repeat Simple_repeat 2 37 0 184 333 115 11 chr3 36029180 36029267 -191495311 + MIR SINE MIR 49 144 -64 573 56 9 130 chr3 36029367 36029475 -191495103 - MSTA LTR MaLR -333 95 1 10560 111 10 31 chr3 36029475 36031087 -191493491 - THE1C-int LTR MaLR 0 1580 3 2182 147 5 36 chr3 36031089 36031476 -191493102 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr3 36032412 36032441 -191492137 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr3 36033936 36033964 -191490614 + (TA)n Simple_repeat Simple_repeat 1 28 0 2145 110 3 0 chr3 36033965 36034256 -191490322 - AluSp SINE Alu -21 292 1 2305 168 3 8 chr3 36035377 36035765 -191488813 - MLT1B LTR MaLR -3 387 2 5299 174 31 28 chr3 36035978 36037212 -191487366 + L1MC1 LINE L1 5095 6332 -1 387 0 0 0 chr3 36037363 36037406 -191487172 + (CA)n Simple_repeat Simple_repeat 2 44 0 1962 247 73 79 chr3 36037434 36038212 -191486366 + L1MDa LINE L1 34 1027 -5513 686 206 49 0 chr3 36038213 36038417 -191486161 + L1MDa LINE L1 1258 1471 -5069 208 268 12 12 chr3 36038613 36038695 -191485883 + A-rich Low_complexity Low_complexity 3 84 0 808 126 7 0 chr3 36038717 36038852 -191485726 + L1PA12 LINE L1 5938 6073 -95 * 2430 41 0 0 chr3 36038840 36039154 -191485424 + L1P LINE L1 2890 3203 -2943 5530 28 18 1 chr3 36039155 36039825 -191484753 - L1PA4 LINE L1 0 6155 5475 180 247 356 0 chr3 36040353 36040426 -191484152 + MIR SINE MIR 2 100 -162 1126 219 129 20 chr3 36040567 36040924 -191483654 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 36042702 36042724 -191481854 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 36043413 36043435 -191481143 + AT_rich Low_complexity Low_complexity 1 22 0 284 277 68 68 chr3 36044946 36045094 -191479484 + MIR SINE MIR 40 187 -75 186 118 0 0 chr3 36045462 36045496 -191479082 + (A)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 36047856 36047878 -191476700 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr3 36048697 36048730 -191475848 + AT_rich Low_complexity Low_complexity 1 33 0 5256 48 1 18 chr3 36049359 36050065 -191474513 - L1P LINE L1 -2248 3898 3205 14665 21 12 1 chr3 36050071 36052674 -191471904 + L1PA4 LINE L1 3606 6152 -3 630 132 0 0 chr3 36052684 36052790 -191471788 + L1PA13 LINE L1 6055 6160 -3 27 29 0 0 chr3 36052901 36052935 -191471643 + AT_rich Low_complexity Low_complexity 1 34 0 930 238 204 16 chr3 36053202 36053698 -191470880 + L1M4 LINE L1 2660 3248 -2898 774 310 92 4 chr3 36054224 36054463 -191470115 - MIR SINE MIR -1 261 2 24 0 8 0 chr3 36054561 36054622 -191469956 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr3 36054701 36054742 -191469836 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr3 36055008 36055029 -191469549 + AT_rich Low_complexity Low_complexity 1 21 0 604 290 80 51 chr3 36055413 36055961 -191468617 - L1M4 LINE L1 -1995 4151 3588 328 268 55 16 chr3 36056120 36056303 -191468275 - L1M4 LINE L1 -2975 3171 2982 500 247 91 105 chr3 36056391 36057115 -191467463 - L1M4 LINE L1 -3316 2830 2117 2065 132 23 0 chr3 36057529 36057832 -191466746 + AluSx SINE Alu 1 310 -2 739 263 105 13 chr3 36058196 36058500 -191466078 + Charlie7 DNA MER1_type 89 420 -2192 1985 153 36 53 chr3 36058670 36058948 -191465630 - MLT-int LTR MaLR -1331 404 133 2075 118 7 0 chr3 36058948 36059252 -191465326 + AluSq SINE Alu 1 306 0 1985 153 36 53 chr3 36059252 36059383 -191465195 - MLT-int LTR MaLR -1602 133 1 539 128 70 32 chr3 36059404 36059515 -191465063 - MLT1A1 LTR MaLR -263 102 1 * 548 162 126 24 chr3 36059515 36059680 -191464898 + HsTC2 DNA Tc2 1569 1750 -148 8700 190 19 4 chr3 36059686 36063322 -191461256 - L1PB1 LINE L1 -3 6864 3167 9046 205 56 3 chr3 36063331 36063515 -191461063 - L1PB1 LINE L1 -3894 2969 2796 2504 65 3 0 chr3 36063515 36063824 -191460754 - AluY SINE Alu -1 310 1 9046 205 56 3 chr3 36063824 36066315 -191458263 - L1PB1 LINE L1 -4067 2796 7 261 222 0 0 chr3 36066315 36066378 -191458200 + HsTC2 DNA Tc2 1744 1806 -92 1421 197 13 39 chr3 36066380 36066689 -191457889 + MLT1A1 LTR MaLR 52 352 -13 21 0 0 0 chr3 36067037 36067058 -191457520 + AT_rich Low_complexity Low_complexity 1 21 0 2010 148 0 0 chr3 36067058 36067349 -191457229 - AluSx SINE Alu -21 291 1 2082 152 0 0 chr3 36067594 36067890 -191456688 - AluSx SINE Alu -16 296 1 273 281 34 34 chr3 36068527 36068616 -191455962 + MIR3 SINE MIR 111 199 -9 7925 187 36 13 chr3 36068695 36071255 -191453323 - L1MA9 LINE L1 -5 6307 3682 183 267 395 0 chr3 36071590 36071676 -191452902 - MIR SINE MIR -19 243 124 392 242 188 31 chr3 36072196 36072419 -191452159 + MER112 DNA MER1_type 2 259 -1 442 148 40 69 chr3 36073849 36073950 -191450628 + MER58B DNA MER1_type 244 341 0 381 130 58 0 chr3 36074322 36074391 -191450187 + AluJ/FRAM SINE Alu 230 302 0 22 80 0 0 chr3 36075570 36075620 -191448958 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr3 36075915 36075941 -191448637 + AT_rich Low_complexity Low_complexity 1 26 0 355 214 126 0 chr3 36076217 36076320 -191448258 + MER103 DNA DNA 5 120 -46 181 281 31 31 chr3 36077492 36077556 -191447022 + L3 LINE CR1 1493 1556 -21 22 70 0 0 chr3 36080782 36080825 -191443753 + AT_rich Low_complexity Low_complexity 1 43 0 2102 116 10 0 chr3 36081450 36081744 -191442834 - AluSq SINE Alu -16 297 1 673 249 71 0 chr3 36083194 36083363 -191441215 + MIR SINE MIR 37 217 -45 206 32 32 0 chr3 36083898 36083929 -191440649 + (CA)n Simple_repeat Simple_repeat 1 32 0 580 320 6 11 chr3 36084042 36084220 -191440358 - MIR SINE MIR -40 222 46 307 280 60 28 chr3 36085514 36085696 -191438882 + MER5A DNA MER1_type 1 188 -1 496 246 262 6 chr3 36086393 36086576 -191438002 - MIR SINE MIR -12 250 21 369 292 99 18 chr3 36086684 36086855 -191437723 - MIR SINE MIR -32 230 46 292 311 116 79 chr3 36087548 36087789 -191436789 - MIR SINE MIR -5 257 8 357 321 106 7 chr3 36087791 36087945 -191436633 - MIR SINE MIR -33 175 1 21 36 0 0 chr3 36089420 36089448 -191435130 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 36091411 36091436 -191433142 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 36091514 36091538 -191433040 + AT_rich Low_complexity Low_complexity 1 24 0 369 0 0 0 chr3 36092400 36092441 -191432137 + (CA)n Simple_repeat Simple_repeat 1 41 0 504 276 49 72 chr3 36092518 36092782 -191431796 + Charlie2 DNA MER1_type 1 258 -2524 1623 223 129 43 chr3 36092782 36093175 -191431403 + Charlie2 DNA MER1_type 1856 2214 -648 1900 153 3 3 chr3 36093175 36093470 -191431108 + AluSx SINE Alu 1 295 -17 1623 223 129 43 chr3 36093470 36093821 -191430757 + Charlie2 DNA MER1_type 2214 2664 -198 346 167 45 45 chr3 36094256 36094322 -191430256 - L2 LINE L2 0 3313 3248 13119 53 14 1 chr3 36094440 36096145 -191428433 + L1P LINE L1 3301 5027 -1119 544 245 48 0 chr3 36096247 36096394 -191428184 - L1ME LINE L1 -613 5557 5404 2326 203 35 26 chr3 36096436 36096982 -191427596 - MER74A LTR ERVL -3 555 5 370 267 59 15 chr3 36097058 36097193 -191427385 - L1ME LINE L1 -772 5394 5254 5072 122 50 13 chr3 36097222 36098089 -191426489 - L1PA13 LINE L1 -7 6156 5258 455 170 80 0 chr3 36098135 36098247 -191426331 - L1MB1 LINE L1 -22 6644 6524 * 2975 178 28 14 chr3 36098241 36099282 -191425296 - L1MB1 LINE L1 -348 6318 5269 1015 146 6 12 chr3 36099282 36099453 -191425125 - Tigger4(Zombi) DNA MER2_type -3 2728 2559 340 182 0 0 chr3 36099441 36099507 -191425071 + Tigger4(Zombi) DNA MER2_type 2541 2606 -125 * 594 220 115 11 chr3 36099508 36099690 -191424888 - L1MB1 LINE L1 -1325 5319 5119 267 136 0 0 chr3 36099689 36099733 -191424845 - L1M3 LINE L1 -683 5488 5445 * 293 239 240 20 chr3 36099752 36099901 -191424677 - L1MB1 LINE L1 -3540 3104 2989 2205 86 0 57 chr3 36099901 36100216 -191424362 - AluY SINE Alu -14 297 1 293 239 240 20 chr3 36100216 36100473 -191424105 - L1MB1 LINE L1 -3655 2989 2618 1640 178 80 93 chr3 36102556 36103083 -191421495 - MLT2B1 LTR ERVL 0 520 1 2158 61 14 7 chr3 36103421 36103714 -191420864 - L1PA5 LINE L1 0 6154 5860 5982 193 52 34 chr3 36103836 36105477 -191419101 - L1 LINE L1 -2426 5139 3463 372 43 0 0 chr3 36105956 36106002 -191418576 + (TG)n Simple_repeat Simple_repeat 1 46 0 218 304 38 38 chr3 36106524 36106603 -191417975 + MIR SINE MIR 63 141 -121 420 193 67 52 chr3 36107034 36107169 -191417409 + L1MC4 LINE L1 7745 7881 -161 1970 196 30 25 chr3 36107285 36107683 -191416895 + MLT2D LTR ERVL 7 406 -8 1617 240 71 23 chr3 36107688 36108122 -191416456 + ERVL-D LTR ERVL 2 456 -5308 2480 165 55 8 chr3 36108122 36109014 -191415564 + ERVL-D LTR ERVL 4782 5738 -26 464 243 45 101 chr3 36109015 36109033 -191415545 - L1MB1 LINE L1 -6308 234 217 2040 182 22 27 chr3 36109033 36109446 -191415132 + MLT2D LTR ERVL 1 411 -3 464 243 45 101 chr3 36109446 36109674 -191414904 - L1MB1 LINE L1 -6325 217 2 603 221 0 29 chr3 36109694 36109866 -191414712 + L1MC4 LINE L1 7875 8041 -1 27 0 0 0 chr3 36109988 36110015 -191414563 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr3 36110759 36110784 -191413794 + AT_rich Low_complexity Low_complexity 1 25 0 1167 242 15 74 chr3 36110900 36111293 -191413285 - MLT1A2 LTR MaLR -4 370 1 308 272 34 75 chr3 36111429 36111576 -191413002 + L1M4 LINE L1 3663 3803 -2343 299 206 42 0 chr3 36112205 36112297 -191412281 + L1M4 LINE L1 3855 3950 -2196 2008 122 0 10 chr3 36112440 36112735 -191411843 + AluSx SINE Alu 1 292 -20 490 333 11 6 chr3 36112909 36113086 -191411492 + GA-rich Low_complexity Low_complexity 3 180 0 223 281 0 84 chr3 36113118 36113296 -191411282 + A-rich Low_complexity Low_complexity 2 164 0 228 188 0 0 chr3 36113310 36113342 -191411236 + A-rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 36113370 36113394 -191411184 + AT_rich Low_complexity Low_complexity 1 24 0 381 277 28 66 chr3 36113504 36113717 -191410861 - L1MC/D LINE L1 -1991 5817 5613 278 247 144 10 chr3 36114048 36114145 -191410433 + MIR3 SINE MIR 88 197 -11 216 163 0 0 chr3 36114334 36114377 -191410201 + (TA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chr3 36114378 36114412 -191410166 + (TG)n Simple_repeat Simple_repeat 2 35 0 418 302 83 71 chr3 36114421 36114673 -191409905 + MIR SINE MIR 1 255 -7 7367 37 0 3 chr3 36114791 36115903 -191408675 - L1PA7 LINE L1 -2 6152 5040 2231 167 96 5 chr3 36117206 36117655 -191406923 - LTR54B LTR ERV1 -7 491 2 623 177 41 14 chr3 36117684 36117831 -191406747 - L1ME2 LINE L1 0 6164 6014 1507 135 139 8 chr3 36117900 36118152 -191406426 - AluJb SINE Alu -17 295 11 22 0 0 0 chr3 36119980 36120002 -191404576 + AT_rich Low_complexity Low_complexity 1 22 0 1703 178 0 7 chr3 36120054 36120340 -191404238 + AluJb SINE Alu 2 285 -27 22 0 0 0 chr3 36120454 36120476 -191404102 + AT_rich Low_complexity Low_complexity 1 22 0 277 71 71 0 chr3 36122215 36122285 -191402293 + (TA)n Simple_repeat Simple_repeat 2 76 0 643 231 15 0 chr3 36122409 36122543 -191402035 - MER5A DNA MER1_type -1 188 53 271 311 23 45 chr3 36122431 36122563 -191402015 + MER5A DNA MER1_type 35 163 -26 * 451 213 102 0 chr3 36122657 36122784 -191401794 + MLT1D LTR MaLR 1 140 -365 355 239 68 0 chr3 36122816 36122904 -191401674 + MLT1C LTR MaLR 369 462 -5 241 333 36 18 chr3 36123185 36123296 -191401282 - MIR3 SINE MIR -94 114 2 242 164 148 0 chr3 36123628 36123689 -191400889 - AluSc SINE Alu -4 295 226 43 35 0 0 chr3 36123941 36123998 -191400580 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 36124197 36124227 -191400351 + AT_rich Low_complexity Low_complexity 1 30 0 470 304 66 61 chr3 36124301 36124663 -191399915 - L1MEd LINE L1 -3314 2815 2452 1163 155 60 20 chr3 36124666 36125026 -191399552 - MSTB1 LTR MaLR 0 432 1 250 287 61 6 chr3 36125058 36125222 -191399356 - L1MEd LINE L1 -3708 2421 2249 1782 147 3 38 chr3 36125222 36125544 -191399034 - AluSx SINE Alu 0 315 4 4059 180 67 10 chr3 36125572 36126962 -191397616 - L1MB7 LINE L1 0 6184 4718 460 273 108 6 chr3 36126965 36127141 -191397437 + MLT1H LTR MaLR 41 234 -315 180 271 29 86 chr3 36127596 36127666 -191396912 - L2 LINE L2 -43 3270 3205 25 31 0 0 chr3 36128624 36128656 -191395922 + AT_rich Low_complexity Low_complexity 1 32 0 1924 164 0 22 chr3 36128892 36129204 -191395374 - AluSx SINE Alu -7 305 1 622 277 29 39 chr3 36129205 36129515 -191395063 - L1MEd LINE L1 -4916 1203 897 870 231 40 44 chr3 36129613 36129911 -191394667 - L1ME3A LINE L1 0 6170 5874 308 356 63 72 chr3 36130185 36130547 -191394031 - L1MEd LINE L1 -5716 403 45 22 0 0 0 chr3 36133273 36133295 -191391283 + AT_rich Low_complexity Low_complexity 1 22 0 2060 125 7 118 chr3 36133656 36134027 -191390551 + MLT1B LTR MaLR 1 317 -73 2116 125 10 0 chr3 36134027 36134332 -191390246 - AluSp SINE Alu -5 308 1 2060 125 7 118 chr3 36134332 36134399 -191390179 + MLT1B LTR MaLR 317 390 0 1165 182 5 5 chr3 36134419 36134628 -191389950 - AluJo SINE Alu -20 292 84 2119 134 61 3 chr3 36134650 36134992 -191389586 + Tigger2a DNA MER2_type 1 362 -72 922 68 0 31 chr3 36135134 36135296 -191389282 + (TA)n Simple_repeat Simple_repeat 1 157 0 363 398 11 0 chr3 36135361 36135537 -191389041 - L2 LINE L2 -708 2606 2429 526 305 47 30 chr3 36135556 36135789 -191388789 - L2 LINE L2 -1311 2003 1767 2385 69 0 28 chr3 36135931 36136250 -191388328 + AluY SINE Alu 1 310 -1 325 111 0 32 chr3 36136459 36136522 -191388056 - L1MB7 LINE L1 -9 6175 6115 216 361 92 8 chr3 36137353 36137472 -191387106 + L2 LINE L2 3143 3271 -1 309 390 35 0 chr3 36137581 36137781 -191386797 + MIR SINE MIR 46 252 -10 21 0 0 0 chr3 36138506 36138527 -191386051 + AT_rich Low_complexity Low_complexity 1 21 0 953 226 30 13 chr3 36139465 36139699 -191384879 + L1PB3 LINE L1 1251 1488 -5077 * 1681 208 25 53 chr3 36139688 36140039 -191384539 + L1PB3 LINE L1 3060 3419 -4146 4349 100 19 11 chr3 36140039 36140708 -191383870 + L1MA1 LINE L1 5623 6297 -5 1681 208 25 53 chr3 36140708 36141347 -191383231 + L1PB3 LINE L1 3419 4019 -3546 5043 182 27 45 chr3 36141358 36142440 -191382138 + L1PB3 LINE L1 5689 6737 -836 1968 123 3 27 chr3 36142440 36142772 -191381806 + AluSx SINE Alu 1 325 0 5043 182 27 45 chr3 36142772 36143592 -191380986 + L1PB3 LINE L1 6737 7570 -3 280 186 44 9 chr3 36144250 36144363 -191380215 + GA-rich Low_complexity Low_complexity 4 120 0 695 153 5 163 chr3 36144365 36144561 -191380017 + MER31B LTR ERV1 1 165 -301 23 0 0 0 chr3 36144563 36144586 -191379992 + AT_rich Low_complexity Low_complexity 1 23 0 879 199 7 0 chr3 36144596 36144747 -191379831 - FRAM SINE Alu -28 148 1 1151 179 96 4 chr3 36144774 36145025 -191379553 + MER31B LTR ERV1 193 466 0 2223 116 3 0 chr3 36145228 36145529 -191379049 + AluSp SINE Alu 5 306 -7 1105 250 119 33 chr3 36145545 36145941 -191378637 - L1ME3A LINE L1 -33 6137 5708 42773 49 9 3 chr3 36145951 36151513 -191373065 + L1P2 LINE L1 2 5582 -573 797 67 0 0 chr3 36151513 36151610 -191372968 + L1PA4 LINE L1 6050 6154 -1 1969 127 25 3 chr3 36151610 36151924 -191372654 + L1P5 LINE L1 5465 5785 -366 447 152 200 16 chr3 36151949 36152074 -191372504 - L1ME3A LINE L1 -479 5691 5544 24 0 0 0 chr3 36152354 36152378 -191372200 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 36152428 36152454 -191372124 + GC_rich Low_complexity Low_complexity 1 26 0 396 0 0 0 chr3 36152473 36152517 -191372061 + (A)n Simple_repeat Simple_repeat 1 44 0 1863 207 78 2 chr3 36152517 36152991 -191371587 + L1MB3 LINE L1 4549 5058 -1088 1997 165 30 2 chr3 36152997 36153390 -191371188 + L1MB3 LINE L1 5778 6181 -2 346 261 56 53 chr3 36153705 36153833 -191370745 + MER5B DNA MER1_type 60 189 0 444 313 111 29 chr3 36154567 36154810 -191369768 + MLT1I LTR MaLR 1 263 -146 275 302 87 23 chr3 36154934 36155106 -191369472 - MIR SINE MIR -73 189 7 979 249 19 46 chr3 36155836 36155960 -191368618 + MIR SINE MIR 7 133 -129 2024 108 0 37 chr3 36155960 36156280 -191368298 - AluSg SINE Alu 0 309 1 979 249 19 46 chr3 36156280 36156414 -191368164 + MIR SINE MIR 133 260 -2 300 27 0 0 chr3 36157484 36157521 -191367057 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2637 23 7 0 chr3 36157524 36157828 -191366750 - AluY SINE Alu -5 306 1 10797 142 10 1 chr3 36158154 36160755 -191363823 - L1PA11 LINE L1 -1 6173 3553 393 128 0 26 chr3 36161547 36161625 -191362953 - L1MB2 LINE L1 -7 6164 6089 680 246 96 5 chr3 36161824 36162023 -191362555 + MIR SINE MIR 12 228 -34 338 290 129 0 chr3 36162211 36162304 -191362274 - MIR SINE MIR -139 123 19 213 116 70 0 chr3 36162657 36162700 -191361878 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2414 87 0 0 chr3 36162773 36163084 -191361494 + AluY SINE Alu 1 311 0 506 268 112 32 chr3 36165322 36165572 -191359006 - L2 LINE L2 0 3313 3044 219 288 88 0 chr3 36165559 36165639 -191358939 - L3b LINE CR1 -137 1446 1360 * 37 0 0 0 chr3 36167112 36167149 -191357429 + AT_rich Low_complexity Low_complexity 1 37 0 826 191 14 0 chr3 36167385 36167532 -191357046 + FRAM SINE Alu 8 156 -20 365 183 0 20 chr3 36167532 36167685 -191356893 + GA-rich Low_complexity Low_complexity 1 150 0 27 29 0 0 chr3 36167800 36167834 -191356744 + AT_rich Low_complexity Low_complexity 1 34 0 292 267 64 85 chr3 36169287 36169532 -191355046 + L1MC/D LINE L1 4099 4348 -1798 3024 146 2 18 chr3 36169532 36170040 -191354538 + L1PA15 LINE L1 5665 6164 -1 292 267 64 85 chr3 36170040 36170202 -191354376 + L1MC/D LINE L1 4348 4495 -1651 2114 134 3 0 chr3 36170202 36170508 -191354070 + AluSx SINE Alu 3 309 -3 292 267 64 85 chr3 36170508 36170615 -191353963 + L1MC/D LINE L1 4495 4603 -1543 332 309 86 30 chr3 36170892 36171125 -191353453 + L1MC/D LINE L1 5127 5372 -774 1232 147 0 0 chr3 36171133 36171322 -191353256 + L1MA2 LINE L1 1252 1750 -5815 15596 151 27 23 chr3 36171444 36174083 -191350495 + L1MA2 LINE L1 1685 4311 -3412 2064 113 10 13 chr3 36174083 36174383 -191350195 + AluSc SINE Alu 1 299 -10 15596 151 27 23 chr3 36174383 36177064 -191347514 + L1MA2 LINE L1 4311 7046 -677 1958 157 3 0 chr3 36177064 36177363 -191347215 + AluSx SINE Alu 1 300 -12 15596 151 27 23 chr3 36177363 36178045 -191346533 + L1MA2 LINE L1 7046 7723 0 690 290 46 29 chr3 36178058 36178406 -191346172 + L1MC/D LINE L1 5458 5811 -1997 315 0 0 0 chr3 36178457 36178492 -191346086 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 210 150 0 chr3 36178524 36178624 -191345954 + L2 LINE L2 2218 2332 -982 216 0 0 0 chr3 36178669 36178693 -191345885 + (TTG)n Simple_repeat Simple_repeat 1 24 0 318 164 27 27 chr3 36178793 36178866 -191345712 - AluJ/FLAM SINE Alu -229 73 1 1798 297 79 24 chr3 36178868 36179736 -191344842 + L2 LINE L2 2356 3263 -50 28 86 0 0 chr3 36179806 36179876 -191344702 + AT_rich Low_complexity Low_complexity 1 70 0 3019 103 0 6 chr3 36180272 36180740 -191343838 - MER1A DNA MER1_type 0 529 25 23 54 0 0 chr3 36181567 36181604 -191342974 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr3 36181704 36181733 -191342845 + AT_rich Low_complexity Low_complexity 1 29 0 420 266 108 0 chr3 36181767 36181906 -191342672 - MIR SINE MIR -13 249 96 1014 180 0 6 chr3 36181956 36182134 -191342444 - AluSg/x SINE Alu -2 310 134 5680 86 21 57 chr3 36183253 36184578 -191340000 - L1PA13 LINE L1 -8 6155 4890 1768 105 0 4 chr3 36184578 36184816 -191339762 - AluSg/x SINE Alu -2 308 72 5680 86 21 57 chr3 36184816 36184909 -191339669 - L1PA13 LINE L1 -1273 4890 4795 2190 88 3 0 chr3 36184965 36185250 -191339328 - AluSx SINE Alu -11 301 16 6981 226 52 22 chr3 36185688 36189784 -191334794 - L1MC1 LINE L1 -34 6579 2254 9919 169 99 21 chr3 36189813 36190431 -191334147 - L1MC1 LINE L1 -4057 2369 1800 1796 149 38 0 chr3 36190431 36190719 -191333859 + AluJb SINE Alu 1 299 -13 9919 169 99 21 chr3 36190719 36192297 -191332281 - L1MC1 LINE L1 -4626 1800 3 1688 162 59 37 chr3 36193025 36193433 -191331145 + Looper DNA T2_type 1 417 -1141 414 57 0 0 chr3 36193490 36193543 -191331035 + (CA)n Simple_repeat Simple_repeat 1 53 0 211 318 36 36 chr3 36193571 36193681 -191330897 - MIR SINE MIR -10 252 143 5175 127 27 1 chr3 36193682 36194612 -191329966 + L1PA15 LINE L1 5142 6161 -4 28 29 0 0 chr3 36194716 36194751 -191329827 + AT_rich Low_complexity Low_complexity 1 35 0 321 319 168 22 chr3 36195410 36195595 -191328983 + MIR SINE MIR 24 235 -27 243 161 0 0 chr3 36196928 36196984 -191327594 + T-rich Low_complexity Low_complexity 1 56 0 7897 11 0 0 chr3 36196988 36198370 -191326208 - L1PA2 LINE L1 -2 6153 4772 5795 19 0 0 chr3 36198370 36199046 -191325532 + L1PA2 LINE L1 4095 4770 -1376 1161 209 85 26 chr3 36199325 36199631 -191324947 + MER5C DNA MER1_type 1 324 0 197 306 28 14 chr3 36200259 36200331 -191324247 - MIR SINE MIR -109 153 81 296 303 178 14 chr3 36200561 36200769 -191323809 - MIR SINE MIR -1 261 20 261 281 118 85 chr3 36200982 36201228 -191323350 + MIR SINE MIR 2 255 -7 279 0 0 0 chr3 36201563 36201594 -191322984 + (TG)n Simple_repeat Simple_repeat 2 32 0 255 263 0 0 chr3 36201594 36201674 -191322904 + (TA)n Simple_repeat Simple_repeat 2 81 0 1950 115 4 0 chr3 36201806 36202076 -191322502 + AluSx SINE Alu 1 271 -41 450 0 0 0 chr3 36202103 36202153 -191322425 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1699 154 0 18 chr3 36202572 36202844 -191321734 + AluJo SINE Alu 1 267 -45 2510 143 46 10 chr3 36203100 36203513 -191321065 - MSTA LTR MaLR 0 428 1 2295 109 0 0 chr3 36203701 36204004 -191320574 + AluSx SINE Alu 1 303 -9 183 129 0 0 chr3 36204037 36204068 -191320510 + (T)n Simple_repeat Simple_repeat 1 31 0 236 278 113 31 chr3 36204810 36204907 -191319671 - MER5B DNA MER1_type -73 105 1 202 196 0 39 chr3 36205177 36205228 -191319350 + L2 LINE L2 3264 3312 -1 2214 74 10 20 chr3 36205838 36206135 -191318443 - AluY SINE Alu -3 308 15 21 0 0 0 chr3 36206172 36206193 -191318385 + AT_rich Low_complexity Low_complexity 1 21 0 956 192 98 5 chr3 36206308 36206511 -191318067 + MER58A DNA MER1_type 2 223 -1 268 281 67 14 chr3 36207748 36207869 -191316709 + MIR SINE MIR 25 138 -124 2041 40 0 8 chr3 36207869 36208119 -191316459 + L1PA5 LINE L1 5901 6148 -6 268 281 67 14 chr3 36208119 36208177 -191316401 + MIR SINE MIR 138 262 0 26 50 0 0 chr3 36209245 36209285 -191315293 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 36210974 36211002 -191313576 + AT_rich Low_complexity Low_complexity 1 28 0 186 368 84 0 chr3 36211070 36211165 -191313413 + MER5B DNA MER1_type 4 106 -72 278 363 10 10 chr3 36211769 36211871 -191312707 - MIR SINE MIR -160 102 1 189 247 71 149 chr3 36211871 36211947 -191312631 + MIR3 SINE MIR 94 157 -51 263 216 45 11 chr3 36211914 36212002 -191312576 + MIR SINE MIR 122 212 -50 11033 77 7 13 chr3 36212654 36215522 -191309056 - L1PA7 LINE L1 -6 6148 3301 3621 77 0 0 chr3 36215511 36215976 -191308602 + L1PA7 LINE L1 5641 6105 -49 * 379 283 11 68 chr3 36266049 36266199 -191258379 + MER58B DNA MER1_type 162 300 -2120 2167 98 0 17 chr3 36266199 36266496 -191258082 - AluSg SINE Alu -18 292 1 379 283 11 68 chr3 36266496 36266536 -191258042 + MER58B DNA MER1_type 300 341 0 555 298 55 7 chr3 36266610 36266885 -191257693 + LTR33 LTR ERVL 184 471 -50 202 325 162 0 chr3 36267163 36267280 -191257298 - L2 LINE L2 -415 2899 2764 5607 113 10 61 chr3 36268272 36269079 -191255499 - L1PA15 LINE L1 -3 6162 5384 2502 66 0 0 chr3 36269079 36269380 -191255198 + AluY SINE Alu 1 301 -10 5607 113 10 61 chr3 36269380 36269827 -191254751 - L1PA15 LINE L1 -781 5384 4916 316 363 171 0 chr3 36270147 36270293 -191254285 - L2 LINE L2 0 3272 3102 603 286 118 29 chr3 36270324 36270562 -191254016 + MIR SINE MIR 2 260 -2 416 350 19 44 chr3 36271423 36271583 -191252995 + MER91A DNA MER1_type 2 157 -39 243 114 0 0 chr3 36272693 36272737 -191251841 - MLT2C1 LTR ERVL -4 514 357 237 218 0 0 chr3 36272750 36272828 -191251750 + (TA)n Simple_repeat Simple_repeat 1 78 0 1883 151 113 20 chr3 36272844 36273282 -191251296 - Tigger2 DNA MER2_type -22 2696 2 282 161 49 0 chr3 36273282 36273363 -191251215 + (TA)n Simple_repeat Simple_repeat 2 86 0 1636 169 30 30 chr3 36273406 36273744 -191250834 - MLT2C1 LTR ERVL -40 357 20 1154 218 36 27 chr3 36273911 36274379 -191250199 - MLT2B1 LTR ERVL -2 518 3 425 248 54 16 chr3 36274381 36274510 -191250068 + MER69A DNA AcHobo 42 175 -2 334 302 60 7 chr3 36274513 36274662 -191249916 + MIR SINE MIR 62 218 -44 280 290 57 72 chr3 36274929 36275122 -191249456 - MIR SINE MIR -33 229 40 357 323 92 24 chr3 36275286 36275450 -191249128 + MER91A DNA MER1_type 19 193 -3 881 217 0 0 chr3 36275661 36275813 -191248765 - FRAM SINE Alu -18 158 7 189 0 0 0 chr3 36275971 36275992 -191248586 + (T)n Simple_repeat Simple_repeat 1 21 0 828 160 115 30 chr3 36276270 36276470 -191248108 + MER20 DNA MER1_type 3 219 0 410 260 144 56 chr3 36277697 36278191 -191246387 - L1ME4a LINE L1 -23 6098 5549 303 283 0 0 chr3 36278342 36278448 -191246130 - L1ME4a LINE L1 -2190 3956 3851 330 286 21 42 chr3 36280480 36280672 -191243906 - HAL1 LINE L1 -2 2505 2318 317 286 131 30 chr3 36280754 36280922 -191243656 - HAL1 LINE L1 -204 2303 2119 526 287 138 25 chr3 36281279 36281634 -191242944 - HAL1 LINE L1 -2107 400 6 24 32 0 0 chr3 36281998 36282029 -191242549 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 36282078 36282106 -191242472 + AT_rich Low_complexity Low_complexity 1 28 0 655 212 31 111 chr3 36282608 36282834 -191241744 - MIR SINE MIR -7 255 48 526 89 13 0 chr3 36282981 36283060 -191241518 - MADE1 DNA Mariner 0 80 1 295 300 54 39 chr3 36283556 36283686 -191240892 - MIR3 SINE MIR -10 198 67 1315 260 24 61 chr3 36284548 36284683 -191239895 - L1ME3A LINE L1 -74 6096 5957 2291 105 0 3 chr3 36284683 36284977 -191239601 - AluSq SINE Alu -20 293 1 1315 260 24 61 chr3 36284977 36285410 -191239168 - L1ME3A LINE L1 -213 5957 5519 184 317 145 21 chr3 36285429 36285574 -191239004 - MIR SINE MIR -74 188 26 980 107 0 13 chr3 36285587 36285727 -191238851 + MER107 DNA MER1_type 6 145 -52 182 36 0 36 chr3 36285727 36285755 -191238823 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 402 299 147 30 chr3 36286081 36286312 -191238266 + L2 LINE L2 2990 3247 -25 964 208 26 39 chr3 36286979 36287210 -191237368 + MIR SINE MIR 35 262 0 280 333 82 6 chr3 36287529 36287688 -191236890 - MIR3 SINE MIR -25 183 13 707 288 52 30 chr3 36288815 36289262 -191235316 + LTR16A LTR ERVL 1 455 -2 193 339 32 50 chr3 36289829 36290047 -191234531 - L2 LINE L2 -379 2935 2722 273 57 0 0 chr3 36290319 36290354 -191234224 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 121 0 0 chr3 36290419 36290452 -191234126 + (TCTCTG)n Simple_repeat Simple_repeat 6 38 0 199 200 0 44 chr3 36292193 36292238 -191232340 + L2 LINE L2 3230 3272 0 1574 163 100 9 chr3 36292472 36292791 -191231787 - MER7A DNA MER2_type 0 346 1 475 327 77 60 chr3 36292822 36292896 -191231682 + L2 LINE L2 2560 2631 -682 996 193 0 16 chr3 36292896 36293083 -191231495 - MER5A DNA MER1_type -1 188 5 475 327 77 60 chr3 36293083 36293228 -191231350 + L2 LINE L2 2631 2772 -541 2453 133 46 12 chr3 36293228 36293414 -191231164 + MSTA LTR MaLR 1 179 -249 1881 182 0 0 chr3 36293414 36293716 -191230862 + AluSx SINE Alu 1 302 -10 2453 133 46 12 chr3 36293716 36293941 -191230637 + MSTA LTR MaLR 179 426 -2 475 327 77 60 chr3 36293941 36294450 -191230128 + L2 LINE L2 2772 3311 -2 2815 229 34 25 chr3 36294547 36295263 -191229315 - MER21B LTR ERV1 -123 740 19 386 224 13 0 chr3 36295286 36295362 -191229216 - MER21B LTR ERV1 -774 89 13 749 249 141 61 chr3 36295589 36296315 -191228263 - LTR1B LTR ERV1 0 826 43 207 0 0 0 chr3 36297227 36297250 -191227328 + (T)n Simple_repeat Simple_repeat 1 23 0 1821 234 65 18 chr3 36297355 36297851 -191226727 + LTR40a LTR ERVL 1 519 0 316 276 26 96 chr3 36298104 36298416 -191226162 + MLT1K LTR MaLR 299 588 0 269 296 0 59 chr3 36299045 36299180 -191225398 + (TATG)n Simple_repeat Simple_repeat 2 128 0 1385 189 17 31 chr3 36300604 36300953 -191223625 - MER39 LTR ERV1 0 707 364 358 244 96 9 chr3 36300979 36301094 -191223484 - MER39 LTR ERV1 -582 125 1 373 115 0 0 chr3 36301228 36301289 -191223289 + L1MA1 LINE L1 6138 6198 -104 394 100 14 14 chr3 36302171 36302241 -191222337 + (TTCTC)n Simple_repeat Simple_repeat 1 70 0 2137 116 30 0 chr3 36302241 36302544 -191222034 - AluSq SINE Alu -1 312 1 203 259 56 0 chr3 36302811 36302865 -191221713 + L2 LINE L2 3200 3256 -16 1966 219 146 8 chr3 36303248 36303315 -191221263 + Zaphod DNA AcHobo 1 57 -3974 357 62 0 0 chr3 36303315 36303363 -191221215 + (CA)n Simple_repeat Simple_repeat 2 49 0 1966 219 146 8 chr3 36303363 36303810 -191220768 + Zaphod DNA AcHobo 57 586 -3445 771 238 121 19 chr3 36303811 36304076 -191220502 + Zaphod DNA AcHobo 3739 4030 -1 384 244 12 0 chr3 36305179 36305265 -191219313 + MER58A DNA MER1_type 4 90 -17 198 0 0 0 chr3 36305265 36305287 -191219291 + (TTA)n Simple_repeat Simple_repeat 3 24 0 16287 29 2 3 chr3 36305288 36308000 -191216578 - L1PA3 LINE L1 -16 6139 3430 2754 32 3 0 chr3 36308000 36308375 -191216203 + L1PA3 LINE L1 3034 3409 -2737 728 232 0 0 chr3 36308375 36308517 -191216061 + MER58A DNA MER1_type 83 224 0 383 317 32 39 chr3 36308659 36308951 -191215627 + L1MC4a LINE L1 7110 7351 -457 245 246 0 0 chr3 36309003 36309064 -191215514 + L1MC5 LINE L1 7333 7393 -568 303 299 23 69 chr3 36309125 36309299 -191215279 + L1MC5 LINE L1 7525 7690 -271 688 296 5 5 chr3 36309709 36309898 -191214680 - L3 LINE CR1 -756 821 633 729 189 61 33 chr3 36310776 36310956 -191213622 - AluJo SINE Alu -13 299 115 616 279 76 36 chr3 36310986 36311237 -191213341 + MIR SINE MIR 2 262 0 217 254 0 0 chr3 36311241 36311296 -191213282 + (TTA)n Simple_repeat Simple_repeat 2 56 0 279 319 64 0 chr3 36311651 36311745 -191212833 - L2 LINE L2 0 3313 3214 1163 149 14 10 chr3 36311788 36311996 -191212582 + MER2 DNA MER2_type 1 209 -136 1270 173 32 5 chr3 36312008 36312228 -191212350 + AluJb SINE Alu 35 260 -52 210 261 143 88 chr3 36312339 36312577 -191212001 - L2 LINE L2 -775 2539 2289 222 277 36 48 chr3 36312923 36313006 -191211572 + MIR3 SINE MIR 90 171 -37 23 33 0 0 chr3 36313356 36313386 -191211192 + AT_rich Low_complexity Low_complexity 1 30 0 448 272 101 22 chr3 36314394 36314591 -191209987 + MIR SINE MIR 20 230 -32 268 355 74 14 chr3 36315321 36315538 -191209040 - MIR SINE MIR -10 252 23 1893 160 54 32 chr3 36318113 36318648 -191205930 - MLT2A2 LTR ERVL -8 546 1 1902 141 31 7 chr3 36318843 36319134 -191205444 - AluSx SINE Alu -14 298 1 742 229 104 25 chr3 36319248 36319488 -191205090 + MIR SINE MIR 4 262 0 430 323 42 30 chr3 36319534 36319749 -191204829 + MIR SINE MIR 16 226 -36 333 313 140 7 chr3 36320071 36320221 -191204357 + MIR SINE MIR 44 213 -49 804 287 85 18 chr3 36320259 36320649 -191203929 - LTR16A LTR ERVL -12 438 23 3919 174 57 21 chr3 36321105 36321876 -191202702 - MER21B LTR ERV1 -49 814 16 24 0 0 0 chr3 36322212 36322236 -191202342 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 36322662 36322685 -191201893 + AT_rich Low_complexity Low_complexity 1 23 0 949 228 32 9 chr3 36322834 36323053 -191201525 - MER58A DNA MER1_type 0 224 1 598 268 7 7 chr3 36323652 36323794 -191200784 + MER5B DNA MER1_type 2 143 -35 1598 212 47 55 chr3 36323794 36323961 -191200617 - MLT1D LTR MaLR 0 505 338 1565 79 51 0 chr3 36323961 36324176 -191200402 - MER30 DNA MER1_type 0 230 5 1598 212 47 55 chr3 36324176 36324517 -191200061 - MLT1D LTR MaLR -167 338 1 308 286 71 0 chr3 36324877 36324989 -191199589 - MIR SINE MIR -43 219 100 387 153 163 10 chr3 36326719 36326817 -191197761 + ERVL LTR ERVL 5652 5764 0 2047 118 0 0 chr3 36326818 36327090 -191197488 - AluSx SINE Alu -2 310 39 634 245 58 1 chr3 36327661 36327845 -191196733 + MIR SINE MIR 14 204 -58 237 235 0 0 chr3 36327849 36327934 -191196644 + (TA)n Simple_repeat Simple_repeat 1 85 0 216 226 81 0 chr3 36327991 36328053 -191196525 + MIR SINE MIR 196 262 0 218 320 0 48 chr3 36329325 36329450 -191195128 - MIR SINE MIR -56 206 88 2799 141 58 14 chr3 36331186 36331482 -191193096 - MLT2B1 LTR ERVL 0 520 192 4392 82 0 15 chr3 36331482 36332078 -191192500 - L1PA8A LINE L1 0 6131 5545 2799 141 58 14 chr3 36332078 36332279 -191192299 - MLT2B1 LTR ERVL -328 192 1 662 233 68 6 chr3 36332530 36332693 -191191885 - MER45A DNA AcHobo -4 174 2 441 308 121 11 chr3 36332723 36332996 -191191582 - MLT1J2 LTR MaLR -125 325 23 23 0 0 0 chr3 36333164 36333187 -191191391 + AT_rich Low_complexity Low_complexity 1 23 0 718 222 6 19 chr3 36334221 36334383 -191190195 + MER58B DNA MER1_type 182 341 0 2101 109 3 26 chr3 36336808 36337121 -191187457 - AluSx SINE Alu -6 306 1 348 200 271 50 chr3 36337199 36337317 -191187261 - MER5A DNA MER1_type -10 179 24 261 0 0 0 chr3 36337317 36337346 -191187232 + (CTG)n Simple_repeat Simple_repeat 1 29 0 348 200 271 50 chr3 36337346 36337367 -191187211 - MER5A DNA MER1_type -165 24 9 440 259 36 0 chr3 36337438 36337550 -191187028 + MIR SINE MIR 45 160 -102 358 308 33 0 chr3 36337582 36337673 -191186905 + L2 LINE L2 3220 3313 0 212 391 11 0 chr3 36338334 36338421 -191186157 - L2 LINE L2 -27 3245 3158 385 263 20 0 chr3 36338554 36338653 -191185925 + L2 LINE L2 3212 3312 -1 279 0 0 0 chr3 36339246 36339277 -191185301 + (A)n Simple_repeat Simple_repeat 1 31 0 2663 94 11 5 chr3 36339370 36339741 -191184837 + THE1C LTR MaLR 1 373 -2 222 300 20 50 chr3 36340525 36340625 -191183953 + MIR3 SINE MIR 66 162 -46 2580 64 0 0 chr3 36342869 36343180 -191181398 - AluY SINE Alu 0 311 1 31 26 0 0 chr3 36344337 36344375 -191180203 + AT_rich Low_complexity Low_complexity 1 38 0 396 242 42 0 chr3 36345875 36345995 -191178583 + MER94 DNA DNA 2 126 -8 190 355 120 25 chr3 36346424 36346624 -191177954 - L3 LINE CR1 -21 1556 1338 685 332 72 4 chr3 36346672 36346949 -191177629 - L3 LINE CR1 -239 1338 1043 441 330 10 95 chr3 36346960 36347160 -191177418 + MER91A DNA MER1_type 1 183 -13 413 251 19 111 chr3 36347184 36347391 -191177187 - L3 LINE CR1 -543 1034 847 355 346 88 15 chr3 36347429 36347634 -191176944 - L3 LINE CR1 -977 600 381 1016 251 70 42 chr3 36348499 36348885 -191175693 - MLT1I LTR MaLR -4 405 9 334 317 44 63 chr3 36349075 36349346 -191175232 + HAL1 LINE L1 1113 1378 -1129 215 260 10 0 chr3 36349359 36349455 -191175123 + (TA)n Simple_repeat Simple_repeat 1 97 0 2477 110 38 5 chr3 36349786 36350158 -191174420 - L1PA11 LINE L1 -2 6172 5789 609 62 0 0 chr3 36350159 36350240 -191174338 - L1PA10 LINE L1 -299 5869 5789 593 74 0 0 chr3 36350241 36350322 -191174256 - L1PA10 LINE L1 -299 5869 5789 3188 86 0 0 chr3 36350323 36350765 -191173813 - L1PA10 LINE L1 -299 5869 5428 * 12143 209 13 37 chr3 36350761 36354603 -191169975 - L1PA12 LINE L1 -2451 5133 5 404 259 185 0 chr3 36354739 36354901 -191169677 - MIR SINE MIR -58 204 13 349 285 33 46 chr3 36355128 36355352 -191169226 + L1MC/D LINE L1 5288 5508 -851 189 0 0 0 chr3 36355362 36355383 -191169195 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 276 30 0 0 chr3 36355382 36355415 -191169163 + (CA)n Simple_repeat Simple_repeat 2 34 0 193 123 27 68 chr3 36355598 36355671 -191168907 + GA-rich Low_complexity Low_complexity 3 72 0 671 276 12 6 chr3 36355671 36355841 -191168737 + MER63A DNA MER1_type 39 209 -1 250 312 37 28 chr3 36356287 36356396 -191168182 + L2 LINE L2 3189 3298 -15 187 218 20 0 chr3 36357329 36357430 -191167148 + C-rich Low_complexity Low_complexity 2 104 0 342 67 0 0 chr3 36358003 36358048 -191166530 + (CA)n Simple_repeat Simple_repeat 2 46 0 2127 132 12 15 chr3 36358631 36358971 -191165607 - MER44D DNA MER2_type 0 609 1 614 245 7 7 chr3 36360406 36360561 -191164017 - MIR SINE MIR 0 262 108 314 313 71 46 chr3 36360572 36360771 -191163807 - MIR SINE MIR -31 231 29 579 259 78 10 chr3 36360864 36361057 -191163521 + Charlie8 DNA MER1_type 15 220 -2197 192 182 0 0 chr3 36361729 36361762 -191162816 - MIR SINE MIR -63 145 113 189 0 0 0 chr3 36364968 36364989 -191159589 + (TA)n Simple_repeat Simple_repeat 2 22 0 203 189 0 0 chr3 36365022 36365059 -191159519 + (TA)n Simple_repeat Simple_repeat 1 37 0 778 289 62 18 chr3 36365119 36365545 -191159033 - LTR16C LTR ERVL 0 491 1 21 0 0 0 chr3 36366649 36366670 -191157908 + AT_rich Low_complexity Low_complexity 1 21 0 249 362 115 6 chr3 36367806 36367980 -191156598 - L3 LINE CR1 -73 1504 1312 235 293 0 0 chr3 36367983 36368041 -191156537 - Charlie8 DNA MER1_type -1010 1407 1350 405 238 160 70 chr3 36368120 36368364 -191156214 - Charlie8 DNA MER1_type -2141 276 11 296 174 47 12 chr3 36368431 36368517 -191156061 + MLT2B3 LTR ERVL 5 93 -461 898 221 81 94 chr3 36368888 36369259 -191155319 + MLT2B3 LTR ERVL 83 448 -106 7855 164 76 20 chr3 36369265 36369660 -191154918 + MSTB-int LTR MaLR 1 372 -1279 2213 125 0 3 chr3 36369660 36369963 -191154615 + AluSx SINE Alu 3 304 -8 7855 164 76 20 chr3 36369963 36371130 -191153448 + MSTB-int LTR MaLR 372 1651 0 1158 146 11 100 chr3 36371130 36371411 -191153167 + MSTB LTR MaLR 1 256 -170 627 272 47 18 chr3 36371670 36371949 -191152629 + LTR33 LTR ERVL 3 258 -265 183 146 0 0 chr3 36373183 36373224 -191151354 + (T)n Simple_repeat Simple_repeat 1 41 0 3045 51 0 0 chr3 36373226 36373599 -191150979 - L1PA4 LINE L1 -3 6152 5780 1088 193 0 37 chr3 36373901 36374119 -191150459 + MER20 DNA MER1_type 9 218 -1 395 324 126 14 chr3 36375200 36375422 -191149156 - MLT1K LTR MaLR -19 569 323 490 302 22 22 chr3 36375865 36376004 -191148574 - MER5B DNA MER1_type -2 176 38 240 339 0 0 chr3 36376633 36376695 -191147883 + C-rich Low_complexity Low_complexity 1 62 0 1063 233 51 6 chr3 36376697 36377202 -191147376 - L1M4 LINE L1 -2467 3679 3119 1470 223 24 50 chr3 36377489 36378035 -191146543 - L1M4 LINE L1 -3068 3078 2547 1241 236 87 77 chr3 36378688 36379189 -191145389 - MLT1H LTR MaLR 0 549 45 211 333 0 0 chr3 36379440 36379509 -191145069 + GA-rich Low_complexity Low_complexity 4 72 0 427 252 129 43 chr3 36380211 36380350 -191144228 - L2 LINE L2 0 3272 3122 316 264 11 0 chr3 36381554 36381645 -191142933 - MLT1I LTR MaLR 0 409 318 719 246 0 31 chr3 36382277 36382468 -191142110 - MER20 DNA MER1_type 0 219 35 472 174 43 61 chr3 36382696 36382811 -191141767 - MIR3 SINE MIR -5 203 91 2171 123 0 19 chr3 36383430 36383746 -191140832 + AluSg SINE Alu 1 310 0 308 261 109 0 chr3 36383791 36383910 -191140668 - MER117 DNA MER1_type -36 161 30 195 42 0 0 chr3 36384032 36384056 -191140522 + (T)n Simple_repeat Simple_repeat 1 24 0 285 130 0 0 chr3 36384445 36384491 -191140087 - MLT2B1 LTR ERVL -8 512 467 308 102 11 34 chr3 36384506 36384594 -191139984 + (TA)n Simple_repeat Simple_repeat 2 87 0 1589 215 89 35 chr3 36384594 36385055 -191139523 - MLT2B1 LTR ERVL -34 486 1 23 0 0 0 chr3 36385647 36385670 -191138908 + GC_rich Low_complexity Low_complexity 1 23 0 292 172 20 40 chr3 36385688 36385787 -191138791 + C-rich Low_complexity Low_complexity 2 98 0 692 221 15 0 chr3 36386393 36386524 -191138054 + MER5A DNA MER1_type 1 133 -56 913 122 0 0 chr3 36386527 36386658 -191137920 - AluSc SINE Alu -4 305 175 325 206 32 0 chr3 36386658 36386721 -191137857 + MER5A DNA MER1_type 125 189 0 263 394 11 23 chr3 36387090 36387265 -191137313 + L2 LINE L2 270 442 -2872 21 36 0 0 chr3 36388210 36388238 -191136340 + AT_rich Low_complexity Low_complexity 1 28 0 350 281 105 6 chr3 36388499 36388670 -191135908 - L1MC/D LINE L1 -1999 5809 5622 305 98 78 0 chr3 36388852 36388903 -191135675 - MLT2A1 LTR ERVL 0 453 399 265 60 100 10 chr3 36388906 36389006 -191135572 + (TA)n Simple_repeat Simple_repeat 1 109 0 2548 89 2 68 chr3 36389007 36389433 -191135145 - MLT2A1 LTR ERVL -44 400 3 428 276 8 8 chr3 36389565 36389688 -191134890 - MIR SINE MIR -4 258 136 229 176 35 94 chr3 36389690 36389775 -191134803 - MER116 DNA Mariner 0 80 1 332 284 9 28 chr3 36389797 36389906 -191134672 - MIR SINE MIR -154 108 2 211 331 66 50 chr3 36390027 36390148 -191134430 + L2 LINE L2 3138 3260 -12 356 235 139 116 chr3 36391155 36391542 -191133036 - MLT1L LTR MaLR -4 611 216 1402 153 36 4 chr3 36392151 36392432 -191132146 - L1MA8 LINE L1 0 6291 6002 3568 122 22 52 chr3 36392573 36392783 -191131795 - L1MA8 LINE L1 -289 6002 5787 252 0 0 0 chr3 36392783 36392811 -191131767 + (TA)n Simple_repeat Simple_repeat 1 28 0 3568 122 22 52 chr3 36392811 36393278 -191131300 - L1MA8 LINE L1 -504 5787 5345 602 281 44 0 chr3 36393280 36393415 -191131163 - FRAM SINE Alu -30 146 6 1275 127 36 12 chr3 36393419 36393671 -191130907 - L1 LINE L1 -779 5367 5110 2366 147 3 3 chr3 36396602 36396977 -191127601 + THE1C LTR MaLR 1 375 0 2247 111 16 5 chr3 36396977 36397553 -191127025 + THE1C-int LTR MaLR 1 643 -937 665 226 44 0 chr3 36397639 36397798 -191126780 - MER3 DNA MER1_type -29 180 15 17722 146 8 7 chr3 36397867 36401254 -191123324 + L1PA11 LINE L1 2087 5477 -697 503 114 0 13 chr3 36401254 36401333 -191123245 - MADE1 DNA Mariner 0 80 3 17722 146 8 7 chr3 36401333 36402031 -191122547 + L1PA11 LINE L1 5477 6173 -1 594 323 25 0 chr3 36402031 36402232 -191122346 + MIR SINE MIR 47 252 -10 2017 149 83 13 chr3 36402253 36402649 -191121929 - MSTB1 LTR MaLR 0 432 9 292 260 50 10 chr3 36402791 36402891 -191121687 - MIR SINE MIR -5 257 154 500 267 105 17 chr3 36403057 36403229 -191121349 - MIR SINE MIR -56 206 20 21 71 0 0 chr3 36403271 36403313 -191121265 + AT_rich Low_complexity Low_complexity 1 42 0 242 317 35 45 chr3 36403327 36403529 -191121049 - L2 LINE L2 -227 3086 2887 572 233 17 57 chr3 36403551 36403727 -191120851 - MER97b DNA MER1_type? -880 173 5 364 284 69 78 chr3 36406145 36406363 -191118215 + MIR SINE MIR 44 259 -3 738 296 40 20 chr3 36407076 36407326 -191117252 - MIR SINE MIR 0 262 8 41 0 0 0 chr3 36407510 36407551 -191117027 + AT_rich Low_complexity Low_complexity 1 41 0 960 252 33 36 chr3 36407990 36408323 -191116255 + LTR16C LTR ERVL 153 484 -7 2400 88 3 0 chr3 36408554 36408861 -191115717 + AluY SINE Alu 1 308 -3 23 68 0 0 chr3 36409971 36410015 -191114563 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr3 36410988 36411018 -191113560 + AT_rich Low_complexity Low_complexity 1 30 0 822 200 91 0 chr3 36411429 36411594 -191112984 + Tigger3(Golem) DNA MER2_type 2 181 -2848 * 4278 122 74 32 chr3 36411592 36411771 -191112807 + Tigger3(Golem) DNA MER2_type 2141 2311 -718 372 22 0 0 chr3 36411771 36411816 -191112762 + (TG)n Simple_repeat Simple_repeat 2 46 0 4278 122 74 32 chr3 36411816 36412488 -191112090 + Tigger3(Golem) DNA MER2_type 2311 3028 -1 194 320 0 39 chr3 36412729 36412807 -191111771 + L2 LINE L2 3234 3308 -5 300 257 0 14 chr3 36413397 36413467 -191111111 - L2 LINE L2 0 3272 3204 1836 144 16 35 chr3 36414096 36414408 -191110170 - AluJo SINE Alu -4 308 3 523 295 145 5 chr3 36416357 36416550 -191108028 - MIR SINE MIR -11 251 32 321 302 0 21 chr3 36416569 36416665 -191107913 + MER5B DNA MER1_type 79 172 -6 393 234 73 68 chr3 36419680 36419933 -191104645 - MLT1K LTR MaLR -6 609 328 181 291 9 100 chr3 36419998 36420108 -191104470 - MIR3 SINE MIR -27 181 82 2122 139 3 0 chr3 36420215 36420517 -191104061 + AluSx SINE Alu 1 303 -9 505 271 14 21 chr3 36420559 36420840 -191103738 + MST-int LTR MaLR 433 711 -940 2071 135 3 19 chr3 36422573 36422885 -191101693 - AluSx SINE Alu 0 312 6 764 295 123 50 chr3 36423199 36423708 -191100870 - L2 LINE L2 -8 3305 2761 1558 171 10 106 chr3 36423708 36424112 -191100466 - MLT1A1 LTR MaLR 0 365 1 764 295 123 50 chr3 36424112 36424154 -191100424 - L2 LINE L2 -552 2761 2723 2090 143 32 24 chr3 36424294 36424596 -191099982 + MSTC LTR MaLR 54 362 -66 2060 109 0 3 chr3 36424596 36424903 -191099675 + AluSq SINE Alu 1 306 0 2090 143 32 24 chr3 36424903 36424971 -191099607 + MSTC LTR MaLR 362 428 0 429 157 36 12 chr3 36425272 36425355 -191099223 - MER5A DNA MER1_type -2 187 103 575 279 59 36 chr3 36426331 36426550 -191098028 + MIR SINE MIR 10 233 -29 193 358 136 19 chr3 36428324 36428486 -191096092 + MIR SINE MIR 20 200 -62 228 67 0 0 chr3 36429102 36429132 -191095446 + (CAT)n Simple_repeat Simple_repeat 2 31 0 426 357 94 14 chr3 36429188 36429401 -191095177 - L2 LINE L2 -4 3268 3039 1004 185 57 64 chr3 36429493 36429807 -191094771 - MER33 DNA MER1_type 0 324 13 351 316 0 0 chr3 36429812 36429891 -191094687 - L2 LINE L2 -33 3239 3161 696 334 72 47 chr3 36429904 36430565 -191094013 - L2 LINE L2 -268 3004 2332 963 309 116 9 chr3 36430567 36431014 -191093564 - LTR33 LTR ERVL -26 495 1 1200 53 12 6 chr3 36431499 36431669 -191092909 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 1148 103 6 0 chr3 36431688 36431862 -191092716 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 194 324 41 90 chr3 36432999 36433144 -191091434 - L2 LINE L2 -182 3090 2953 572 196 69 123 chr3 36433239 36433605 -191090973 + MLT1H LTR MaLR 129 542 0 374 0 0 21 chr3 36433685 36433732 -191090846 + (TA)n Simple_repeat Simple_repeat 1 46 0 930 199 21 5 chr3 36434156 36434342 -191090236 - MER5A DNA MER1_type 0 189 1 1877 178 55 15 chr3 36434361 36434760 -191089818 + MLT2C2 LTR ERVL 1 415 -49 191 88 29 0 chr3 36434872 36434906 -191089672 + (GA)n Simple_repeat Simple_repeat 2 36 0 378 107 0 0 chr3 36434968 36435024 -191089554 + (A)n Simple_repeat Simple_repeat 1 56 0 203 364 50 16 chr3 36435031 36435152 -191089426 + L2 LINE L2 2934 3058 -214 242 250 0 16 chr3 36435560 36435624 -191088954 - L2 LINE L2 -1 3271 3209 961 255 137 29 chr3 36436316 36436696 -191087882 + LTR16C LTR ERVL 71 491 0 466 266 68 34 chr3 36437254 36437461 -191087117 + L2 LINE L2 2593 2806 -508 299 270 139 17 chr3 36437454 36437569 -191087009 + L2 LINE L2 3011 3139 -174 * 1381 228 111 8 chr3 36437622 36437991 -191086587 - L1ME1 LINE L1 -283 5883 5477 2068 171 50 16 chr3 36438122 36438606 -191085972 - L1MC2 LINE L1 -6 6338 5839 188 265 0 0 chr3 36438606 36438650 -191085928 - MER5B DNA MER1_type -128 50 7 433 223 39 85 chr3 36438657 36438787 -191085791 + L2 LINE L2 3190 3313 0 216 0 0 0 chr3 36439347 36439371 -191085207 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 266 270 90 0 chr3 36439456 36439556 -191085022 + MIR3 SINE MIR 99 207 -1 274 353 147 0 chr3 36439857 36439973 -191084605 + L2 LINE L2 3136 3268 -4 216 0 0 0 chr3 36440144 36440168 -191084410 + (T)n Simple_repeat Simple_repeat 1 24 0 254 275 145 22 chr3 36440243 36440381 -191084197 - MIR SINE MIR -29 233 79 261 338 103 0 chr3 36440521 36440657 -191083921 + MIR SINE MIR 112 261 -1 26 30 0 0 chr3 36441248 36441281 -191083297 + AT_rich Low_complexity Low_complexity 1 33 0 1659 286 59 29 chr3 36441283 36442334 -191082244 - L1ME3A LINE L1 -52 6118 5035 4089 156 37 32 chr3 36442334 36443115 -191081463 - LTR1 LTR ERV1 0 785 1 863 121 52 81 chr3 36443115 36443288 -191081290 - HUERS-P2 LTR ERV1 0 3088 2921 1162 130 5 5 chr3 36443462 36443654 -191080924 - Tigger1 DNA MER2_type -1186 1232 1041 8310 125 38 8 chr3 36444550 36445876 -191078702 - HUERS-P2 LTR ERV1 -249 2839 1474 3206 162 38 29 chr3 36445889 36446549 -191078029 - LTR1 LTR ERV1 -119 666 1 635 282 16 12 chr3 36446554 36446802 -191077776 - L1ME3A LINE L1 -1115 5031 4783 363 319 49 11 chr3 36446807 36447070 -191077508 - L1ME3A LINE L1 -1402 4744 4472 1032 280 73 62 chr3 36447218 36448322 -191076256 - L1ME3A LINE L1 -1744 4402 3286 702 210 114 54 chr3 36448438 36448789 -191075789 - L1ME3 LINE L1 -15 6541 6174 13259 148 22 11 chr3 36448789 36448984 -191075594 - Tigger1 DNA MER2_type -1 2417 2226 1705 126 19 4 chr3 36448984 36449255 -191075323 - L1PB1 LINE L1 -1 6150 5876 13259 148 22 11 chr3 36449255 36451146 -191073432 - Tigger1 DNA MER2_type -192 2226 301 237 65 0 0 chr3 36451146 36451177 -191073401 + (CA)n Simple_repeat Simple_repeat 2 32 0 13259 148 22 11 chr3 36451177 36451454 -191073124 - Tigger1 DNA MER2_type -2117 301 28 1184 261 46 41 chr3 36451489 36452591 -191071987 - L1ME3 LINE L1 -394 6162 5064 253 189 94 9 chr3 36452638 36452744 -191071834 - L1ME3 LINE L1 -4581 1959 1845 608 202 50 81 chr3 36453120 36453318 -191071260 + MLT1I LTR MaLR 217 408 -1 308 277 92 34 chr3 36453540 36453659 -191070919 - L2 LINE L2 -243 3029 2904 480 220 74 150 chr3 36453687 36454048 -191070530 + LTR16A1 LTR ERVL 1 317 -140 1034 175 46 136 chr3 36454048 36454483 -191070095 - MSTD LTR MaLR 0 396 1 480 220 74 150 chr3 36454483 36454607 -191069971 + LTR16A1 LTR ERVL 317 449 -8 259 293 30 0 chr3 36454655 36454754 -191069824 - MER103 DNA DNA -24 142 41 305 350 25 0 chr3 36454781 36454901 -191069677 + MIR SINE MIR 20 142 -120 1428 240 120 34 chr3 36454911 36455494 -191069084 + L1ME1 LINE L1 5530 6162 -4 224 246 217 0 chr3 36455613 36455682 -191068896 + MIR SINE MIR 153 236 -26 21 0 0 0 chr3 36455737 36455758 -191068820 + AT_rich Low_complexity Low_complexity 1 21 0 956 67 0 15 chr3 36455780 36455915 -191068663 - L1PA4 LINE L1 0 6155 6023 576 263 43 14 chr3 36457648 36457857 -191066721 - L1ME1 LINE L1 -7 6159 5945 368 244 67 88 chr3 36458524 36458717 -191065861 - MIR SINE MIR -2 260 72 363 106 0 0 chr3 36458901 36458967 -191065611 + (TG)n Simple_repeat Simple_repeat 2 67 0 288 130 0 0 chr3 36459470 36459516 -191065062 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 264 59 0 0 chr3 36459518 36459552 -191065026 + (TG)n Simple_repeat Simple_repeat 1 34 0 242 351 18 18 chr3 36461092 36461203 -191063375 + MIR SINE MIR 30 140 -68 393 217 12 0 chr3 36461329 36461412 -191063166 + MER5A DNA MER1_type 26 109 -80 745 247 30 6 chr3 36461466 36461632 -191062946 + MER5A DNA MER1_type 2 171 -18 231 239 0 15 chr3 36461725 36461792 -191062786 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 228 250 12 12 chr3 36461891 36461971 -191062607 - LTR67 LTR ERVL -20 537 458 210 239 36 29 chr3 36463547 36463690 -191060888 + (TTATA)n Simple_repeat Simple_repeat 1 141 -387 1581 134 78 34 chr3 36463690 36464010 -191060568 - MER44D DNA MER2_type -1 608 5 210 239 36 29 chr3 36464010 36464072 -191060506 + (TTATA)n Simple_repeat Simple_repeat 141 528 0 227 111 48 16 chr3 36464076 36464139 -191060439 + (TA)n Simple_repeat Simple_repeat 1 65 0 204 255 226 69 chr3 36467151 36467253 -191057325 - MIR3 SINE MIR -49 159 42 464 139 38 0 chr3 36467266 36467345 -191057233 + MLT1F LTR MaLR 1 82 -460 1516 186 23 39 chr3 36467537 36467844 -191056734 - AluJo SINE Alu -6 306 5 494 277 122 29 chr3 36468235 36469060 -191055518 - L1MCc LINE L1 -4697 2246 1279 268 288 9 36 chr3 36469889 36470000 -191054578 - MIR SINE MIR -33 229 122 753 294 87 4 chr3 36470126 36470357 -191054221 + MIR SINE MIR 11 260 -2 219 195 0 0 chr3 36470431 36470472 -191054106 + L2 LINE L2 3186 3226 -87 1474 237 30 40 chr3 36471198 36471663 -191052915 - MLT1C LTR MaLR -1 466 1 227 308 25 101 chr3 36471978 36472264 -191052314 - L2 LINE L2 -205 3067 2804 1061 202 0 5 chr3 36472371 36472574 -191052004 - MLT1A1 LTR MaLR -29 336 135 1596 225 22 22 chr3 36472574 36472939 -191051639 - MLT1A1 LTR MaLR 0 365 1 238 316 91 73 chr3 36472945 36473287 -191051291 - L2 LINE L2 -528 2786 2439 303 164 0 0 chr3 36474050 36474111 -191050467 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 2402 136 114 50 chr3 36474112 36474596 -191049982 - MLT2B3 LTR ERVL -39 515 1 227 272 54 88 chr3 36475070 36475217 -191049361 + MIR SINE MIR 120 261 -1 266 194 32 16 chr3 36476200 36476262 -191048316 + MIR SINE MIR 93 155 -107 1121 216 75 48 chr3 36476390 36476829 -191047749 - LTR37B LTR ERV1 -3 465 15 1603 164 27 27 chr3 36476845 36477137 -191047441 - AluJb SINE Alu -19 293 2 21 36 0 0 chr3 36479494 36479522 -191045056 + AT_rich Low_complexity Low_complexity 1 28 0 287 336 109 0 chr3 36479628 36479857 -191044721 - L1ME LINE L1 -351 5819 5566 422 263 78 37 chr3 36479862 36480079 -191044499 - L1ME LINE L1 -861 5285 5060 263 247 130 0 chr3 36480567 36480644 -191043934 - L2 LINE L2 0 3313 3227 650 348 166 28 chr3 36480665 36481403 -191043175 - L2 LINE L2 -248 3065 2223 9728 138 9 1 chr3 36481715 36484095 -191040483 + L1PA12 LINE L1 3656 6046 -122 422 241 45 33 chr3 36484286 36484531 -191040047 + L1PA12 LINE L1 5921 6168 0 231 375 53 46 chr3 36485025 36485177 -191039401 - L2 LINE L2 -22 3250 3098 185 108 27 0 chr3 36485276 36485313 -191039265 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 619 251 117 14 chr3 36485619 36485842 -191038736 - MLT1J2 LTR MaLR -204 246 1 449 246 27 18 chr3 36485944 36486054 -191038524 - MIR SINE MIR -149 113 3 322 292 144 35 chr3 36486138 36486340 -191038238 - L1ME LINE L1 -451 5670 5447 358 196 22 0 chr3 36486671 36486763 -191037815 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 931 184 56 0 chr3 36487179 36487358 -191037220 - MER5A DNA MER1_type 0 189 1 1134 229 5 0 chr3 36489014 36489232 -191035346 - MER20 DNA MER1_type 0 219 1 183 222 56 0 chr3 36490820 36490874 -191033704 - MIR3 SINE MIR -1 207 151 574 245 38 33 chr3 36491004 36491188 -191033390 - MER63A DNA MER1_type -25 185 1 183 225 88 50 chr3 36491301 36491381 -191033197 - L2 LINE L2 -327 2945 2863 246 171 72 90 chr3 36493039 36493150 -191031428 + MER103 DNA DNA 12 120 -46 860 215 92 0 chr3 36493222 36493417 -191031161 + MER58A DNA MER1_type 12 224 0 645 249 107 29 chr3 36494080 36494543 -191030035 - MLT1F1 LTR MaLR -3 564 1 384 240 42 0 chr3 36494681 36494777 -191029801 - MER91B DNA MER1_type -1 189 90 325 235 78 41 chr3 36494794 36494914 -191029664 - MER91B DNA MER1_type -60 130 1 230 323 15 0 chr3 36495110 36495175 -191029403 + L2 LINE L2 3142 3207 -65 227 283 25 67 chr3 36495232 36495352 -191029226 - L2 LINE L2 -95 3218 3104 262 377 23 0 chr3 36495900 36496030 -191028548 + L3b LINE CR1 1104 1236 -347 184 256 141 26 chr3 36497809 36497887 -191026691 - L2 LINE L2 -20 3252 3166 424 284 148 12 chr3 36498330 36498492 -191026086 - MER5A DNA MER1_type -5 184 1 200 316 51 31 chr3 36499567 36499665 -191024913 - MIR3 SINE MIR 0 208 109 266 368 11 0 chr3 36500098 36500185 -191024393 + L2 LINE L2 2881 2968 -304 371 314 68 27 chr3 36500362 36500582 -191023996 - MLT1L LTR MaLR -192 423 195 1860 130 0 0 chr3 36500878 36501139 -191023439 - AluY SINE Alu -16 295 35 475 338 45 40 chr3 36501143 36501236 -191023342 - MIR SINE MIR -21 241 150 1713 147 29 33 chr3 36501236 36501361 -191023217 + AluSc SINE Alu 1 125 -184 207 0 0 0 chr3 36501361 36501384 -191023194 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1713 147 29 33 chr3 36501384 36501564 -191023014 + AluSc SINE Alu 125 305 -4 475 338 45 40 chr3 36501564 36501692 -191022886 - MIR SINE MIR -112 150 19 1194 52 35 0 chr3 36501991 36502163 -191022415 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 384 250 19 10 chr3 36502163 36502267 -191022311 + CT-rich Low_complexity Low_complexity 2 106 0 1208 261 4 4 chr3 36502399 36502671 -191021907 + MLT1E LTR MaLR 314 585 -8 256 248 99 75 chr3 36502962 36503123 -191021455 + LTR33A LTR ERVL 21 185 -338 439 238 184 12 chr3 36503208 36503376 -191021202 - MER3 DNA MER1_type -12 197 1 379 250 105 7 chr3 36503390 36503542 -191021036 + LTR33A LTR ERVL 294 460 -63 1262 206 67 75 chr3 36503637 36503743 -191020835 - MLT1F1 LTR MaLR 0 567 462 2195 113 0 0 chr3 36503743 36504027 -191020551 + AluSx SINE Alu 1 284 -28 1262 206 67 75 chr3 36504027 36504047 -191020531 - MLT1F1 LTR MaLR -105 462 443 378 0 0 0 chr3 36504047 36504089 -191020489 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1262 206 67 75 chr3 36504089 36504350 -191020228 - MLT1F1 LTR MaLR -124 443 182 416 338 26 7 chr3 36504423 36504577 -191020001 - MLT1F1 LTR MaLR -383 159 3 21 36 0 0 chr3 36505579 36505607 -191018971 + AT_rich Low_complexity Low_complexity 1 28 0 216 299 0 26 chr3 36506056 36506133 -191018445 + CT-rich Low_complexity Low_complexity 4 78 0 247 339 62 9 chr3 36506474 36506586 -191017992 + L2 LINE L2 3150 3267 -5 3338 195 56 19 chr3 36506773 36507377 -191017201 + L1MA9 LINE L1 4428 5077 -1069 2824 13 0 0 chr3 36507377 36507687 -191016891 - AluYb8 SINE Alu -8 310 1 3338 195 56 19 chr3 36507687 36507973 -191016605 + L1MA9 LINE L1 5077 5351 -795 1334 115 86 0 chr3 36508267 36508476 -191016102 - MER30 DNA MER1_type 0 230 4 3422 191 85 16 chr3 36508588 36509461 -191015117 + L1MA9 LINE L1 5349 6281 -31 2063 103 4 11 chr3 36509480 36509785 -191014793 - AluSc SINE Alu 0 303 1 773 238 52 40 chr3 36511274 36511362 -191013216 + MIR SINE MIR 3 88 -174 1745 169 13 10 chr3 36511362 36511664 -191012914 - AluJb SINE Alu -7 305 3 773 238 52 40 chr3 36511664 36511823 -191012755 + MIR SINE MIR 88 253 -9 2115 120 0 3 chr3 36511851 36512181 -191012397 - AluSq SINE Alu 0 329 1 1148 227 40 0 chr3 36512214 36512487 -191012091 - LTR16A1 LTR ERVL -5 452 169 440 161 137 16 chr3 36513722 36513846 -191010732 + L1MA9 LINE L1 5126 5264 -882 1214 181 69 20 chr3 36513846 36513925 -191010653 + L1MA9 LINE L1 5698 5772 -540 468 0 0 0 chr3 36513925 36513977 -191010601 + (CA)n Simple_repeat Simple_repeat 2 53 0 1214 181 69 20 chr3 36513977 36514200 -191010378 + L1MA9 LINE L1 5772 6015 -297 5815 193 65 27 chr3 36514345 36515893 -191008685 - L1MC3 LINE L1 -1 7784 6179 375 226 97 45 chr3 36516074 36516229 -191008349 + MIR SINE MIR 53 215 -47 411 21 0 0 chr3 36516951 36516999 -191007579 + (CA)n Simple_repeat Simple_repeat 1 48 0 191 229 16 82 chr3 36517187 36517248 -191007330 + MIR3 SINE MIR 113 169 -39 347 217 50 25 chr3 36518349 36518469 -191006109 + MER103 DNA DNA 27 149 -17 561 286 127 29 chr3 36518520 36518962 -191005616 - MLT1G1 LTR MaLR -8 559 87 452 259 9 0 chr3 36519122 36519234 -191005344 - MER97c DNA MER1_type? -908 182 70 852 131 74 6 chr3 36519236 36519411 -191005167 - MER53 DNA DNA 0 189 3 467 362 63 5 chr3 36519527 36519734 -191004844 + MIR SINE MIR 20 238 -24 249 354 7 14 chr3 36520281 36520425 -191004153 + C-rich Low_complexity Low_complexity 2 144 0 609 171 0 0 chr3 36520577 36520694 -191003884 + CT-rich Low_complexity Low_complexity 2 118 0 21 0 0 0 chr3 36521486 36521507 -191003071 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 36522331 36522359 -191002219 + AT_rich Low_complexity Low_complexity 1 28 0 509 277 189 6 chr3 36522787 36523123 -191001455 + LTR33A LTR ERVL 67 504 -19 2496 138 33 24 chr3 36523708 36524165 -191000413 - L1MA4 LINE L1 0 6300 5840 460 224 219 0 chr3 36524356 36524521 -191000057 - MIR SINE MIR -1 261 67 13970 158 24 36 chr3 36526180 36527190 -190997388 - L1 LINE L1 -1886 5679 4658 204 40 0 0 chr3 36527190 36527215 -190997363 + (TC)n Simple_repeat Simple_repeat 1 25 0 2037 122 0 0 chr3 36527215 36527493 -190997085 - AluSx SINE Alu -32 280 3 13970 158 24 36 chr3 36527493 36530459 -190994119 - L1 LINE L1 -2906 4659 1760 225 0 0 0 chr3 36530459 36530484 -190994094 + (TC)n Simple_repeat Simple_repeat 2 26 0 13970 158 24 36 chr3 36530484 36530921 -190993657 - L1 LINE L1 -5805 1760 1319 711 265 89 124 chr3 36531175 36531612 -190992966 + MLT1G LTR MaLR 15 436 -106 231 114 0 0 chr3 36531617 36531652 -190992926 + MLT1G LTR MaLR 556 590 0 488 268 73 92 chr3 36532028 36532342 -190992236 + MLT1I LTR MaLR 79 386 -23 232 239 15 15 chr3 36532695 36532762 -190991816 - L1MC5 LINE L1 -78 7883 7817 527 264 8 0 chr3 36532978 36533107 -190991471 - MER94 DNA DNA -1 133 4 697 251 29 11 chr3 36533285 36533460 -190991118 - MER45A DNA AcHobo 0 178 1 211 329 25 13 chr3 36533647 36533726 -190990852 - MIR SINE MIR -181 81 2 569 246 99 37 chr3 36534562 36534753 -190989825 + MIR SINE MIR 12 214 -48 249 378 0 0 chr3 36535678 36535752 -190988826 + ORSL DNA AcHobo 202 275 0 1078 188 28 86 chr3 36535910 36536234 -190988344 - MER46C DNA MER2_type -32 306 2 280 333 19 19 chr3 36536298 36536406 -190988172 - MIR SINE MIR -108 154 47 192 40 0 0 chr3 36537228 36537253 -190987325 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 607 229 33 19 chr3 36537704 36537954 -190986624 + L1M2 LINE L1 5200 5446 -705 849 266 65 80 chr3 36537963 36538513 -190986065 - MER34 LTR ERV1 0 542 1 1313 275 65 70 chr3 36538520 36539207 -190985371 + L1ME3A LINE L1 5459 6142 -28 1201 199 42 10 chr3 36540047 36540353 -190984225 - LTR37A LTR ERV1 0 426 111 1846 123 43 14 chr3 36540938 36541214 -190983364 + AluSg SINE Alu 3 286 -24 200 304 0 0 chr3 36541775 36541831 -190982747 + CT-rich Low_complexity Low_complexity 3 58 0 8945 73 13 2 chr3 36543758 36545737 -190978841 - L1PA7 LINE L1 -20 6134 4138 2303 110 0 0 chr3 36546424 36546723 -190977855 - AluSc SINE Alu -10 299 1 598 245 40 20 chr3 36546726 36546877 -190977701 - MIR SINE MIR -104 158 5 2146 110 0 10 chr3 36547602 36547902 -190976676 + AluSc SINE Alu 1 297 -12 265 304 76 0 chr3 36549059 36549151 -190975427 - MIR SINE MIR -70 192 94 664 287 12 18 chr3 36549204 36549368 -190975210 - MER5A DNA MER1_type 0 189 27 1270 235 6 42 chr3 36550232 36550585 -190973993 + MER58B DNA MER1_type 2 341 0 315 203 0 0 chr3 36551279 36551353 -190973225 - L1MB7 LINE L1 -3 6181 6108 414 181 29 0 chr3 36551357 36551462 -190973116 + (TA)n Simple_repeat Simple_repeat 2 109 0 4384 230 82 29 chr3 36551463 36552073 -190972505 - L1MB7 LINE L1 -93 6091 5515 2526 166 22 0 chr3 36552073 36552490 -190972088 - MSTB LTR MaLR 0 426 1 4384 230 82 29 chr3 36552490 36552744 -190971834 - L1MB7 LINE L1 -669 5515 5276 2402 63 3 0 chr3 36552744 36553031 -190971547 - AluY SINE Alu -23 288 1 4384 230 82 29 chr3 36553031 36554605 -190969973 - L1MB7 LINE L1 -908 5276 3526 253 357 54 38 chr3 36554666 36554851 -190969727 - LTR16C LTR ERVL -196 295 108 350 290 11 0 chr3 36554966 36555059 -190969519 - Tigger7 DNA MER2_type -4 2483 2390 * 1055 233 20 0 chr3 36555057 36555259 -190969319 - Tigger7 DNA MER2_type -466 267 62 1359 323 67 49 chr3 36556086 36557412 -190967166 - ERVL LTR ERVL -898 4597 3155 3670 96 146 131 chr3 36557413 36558839 -190965739 - pTR5 LTR ERV1 0 2606 1524 857 302 42 29 chr3 36558813 36559124 -190965454 - ERVL LTR ERVL -2474 3180 2866 * 490 368 38 17 chr3 36559111 36559402 -190965176 - ERVL LTR ERVL -4078 1686 1390 * 1746 183 51 0 chr3 36559498 36559832 -190964746 - MLT1A1 LTR MaLR -14 351 1 402 305 23 8 chr3 36560188 36560346 -190964232 + MLT1J2 LTR MaLR 1 160 -249 907 200 71 78 chr3 36560355 36560650 -190963928 - MLT1B LTR MaLR 0 390 98 304 227 144 10 chr3 36561269 36561366 -190963212 + MLT1I LTR MaLR 299 408 -1 3458 152 95 19 chr3 36561705 36562376 -190962202 + MER72 LTR ERV1 1 722 0 21 36 0 0 chr3 36562509 36562537 -190962041 + AT_rich Low_complexity Low_complexity 1 28 0 457 320 44 19 chr3 36563492 36563698 -190960880 + MIR SINE MIR 15 225 -37 2058 132 139 13 chr3 36563790 36564170 -190960408 + MSTA LTR MaLR 1 428 0 376 329 22 15 chr3 36564204 36564341 -190960237 - MIR SINE MIR -123 139 2 2434 75 0 31 chr3 36564700 36565021 -190959557 - AluY SINE Alu 0 311 1 194 329 92 0 chr3 36565213 36565289 -190959289 + MIR3 SINE MIR 5 87 -121 228 35 0 0 chr3 36565517 36565546 -190959032 + (TG)n Simple_repeat Simple_repeat 1 29 0 351 320 0 8 chr3 36565727 36565849 -190958729 - LTR67 LTR ERVL -19 538 418 2340 101 0 0 chr3 36566019 36566316 -190958262 - AluSx SINE Alu -15 297 1 183 186 0 0 chr3 36566777 36566820 -190957758 + T-rich Low_complexity Low_complexity 1 43 0 2929 173 26 9 chr3 36567611 36568149 -190956429 + MER44D DNA MER2_type 1 602 -3 29 78 0 0 chr3 36568236 36568300 -190956278 + AT_rich Low_complexity Low_complexity 1 64 0 1010 346 177 19 chr3 36568750 36569949 -190954629 + L3 LINE CR1 189 1576 -1 245 333 124 7 chr3 36570404 36570557 -190954021 - MIR SINE MIR -11 251 81 203 175 0 0 chr3 36570726 36570766 -190953812 + A-rich Low_complexity Low_complexity 1 40 0 313 259 108 57 chr3 36572542 36572700 -190951878 - MIR SINE MIR -59 203 38 438 283 107 83 chr3 36575101 36575391 -190949187 - L2 LINE L2 0 3272 2976 247 250 39 86 chr3 36577003 36577131 -190947447 - MLT1J LTR MaLR -66 445 324 256 263 105 17 chr3 36577484 36577688 -190946890 - L1P5 LINE L1 -643 5508 5283 1246 197 12 37 chr3 36578147 36578391 -190946187 + MER8 DNA MER2_type 2 239 0 782 287 69 23 chr3 36578799 36579060 -190945518 + MER54A LTR ERVL 303 575 -326 26 30 0 0 chr3 36580412 36580445 -190944133 + AT_rich Low_complexity Low_complexity 1 33 0 396 0 0 0 chr3 36580834 36580878 -190943700 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 36580928 36580949 -190943629 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr3 36581219 36581258 -190943320 + AT_rich Low_complexity Low_complexity 1 39 0 32 86 0 0 chr3 36582482 36582563 -190942015 + AT_rich Low_complexity Low_complexity 1 81 0 266 295 107 54 chr3 36582924 36583036 -190941542 - L2 LINE L2 -8 3305 3188 185 178 22 0 chr3 36583739 36583784 -190940794 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 216 0 0 0 chr3 36584149 36584173 -190940405 + (T)n Simple_repeat Simple_repeat 1 24 0 322 211 23 113 chr3 36586461 36586524 -190938054 - Charlie8 DNA MER1_type -185 145 99 1812 163 0 3 chr3 36586524 36586813 -190937765 + AluJb SINE Alu 1 288 -24 322 211 23 113 chr3 36586813 36586882 -190937696 - Charlie8 DNA MER1_type -231 99 25 460 239 2 42 chr3 36587306 36587426 -190937152 + MLT1E LTR MaLR 57 170 -397 202 271 34 17 chr3 36637488 36637547 -190887031 - MIR SINE MIR -91 171 112 497 338 54 13 chr3 36637589 36637903 -190886675 + L2 LINE L2 1856 2182 -1132 351 0 0 0 chr3 36637925 36637964 -190886614 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1177 216 157 44 chr3 36637964 36638372 -190886206 - MER39 LTR ERV1 -31 676 223 229 309 41 10 chr3 36638365 36638462 -190886116 - LTR48B LTR ERV1 -541 103 4 * 245 346 58 32 chr3 36638741 36638897 -190885681 - MIR3 SINE MIR -31 177 18 505 304 20 20 chr3 36639643 36639791 -190884787 - MIR3 SINE MIR 0 208 61 592 236 22 33 chr3 36640742 36640924 -190883654 - L1M4 LINE L1 -2272 3874 3695 3824 104 35 199 chr3 36640930 36641929 -190882649 + Tigger1 DNA MER2_type 388 1222 -1196 781 195 154 5 chr3 36641961 36642156 -190882422 + Tigger1 DNA MER2_type 2185 2408 -10 330 280 60 0 chr3 36642247 36642347 -190882231 - MIR SINE MIR -38 224 119 242 353 44 19 chr3 36643569 36643741 -190880837 + MIR SINE MIR 35 206 -56 2288 168 32 43 chr3 36644323 36644830 -190879748 - L1MB7 LINE L1 -14 6406 5906 4053 180 43 23 chr3 36644836 36645741 -190878837 - L1MC2 LINE L1 -8 6336 5414 5009 137 72 87 chr3 36645744 36646876 -190877702 + MER52C LTR ERV1 31 1146 -132 254 173 0 27 chr3 36646876 36646951 -190877627 - L1MC2 LINE L1 -2642 5353 5281 * 760 229 3 0 chr3 36646934 36647104 -190877474 - L1MB7 LINE L1 -513 5907 5758 * 1382 42 31 0 chr3 36647101 36647294 -190877284 - L1PA4 LINE L1 -2819 3327 3129 17333 27 7 1 chr3 36647294 36650127 -190874451 + L1PA4 LINE L1 3317 6154 -1 504 225 0 0 chr3 36650138 36650259 -190874319 - L1MB7 LINE L1 -644 5775 5655 * 855 267 54 40 chr3 36650255 36650678 -190873900 - L1MB7 LINE L1 -3922 2462 2034 1179 168 44 134 chr3 36650679 36651066 -190873512 - MLT1A1 LTR MaLR -10 355 4 2093 215 45 39 chr3 36651112 36651201 -190873377 - L1MB7 LINE L1 -4497 1887 1800 2583 44 0 28 chr3 36651201 36651521 -190873057 - AluY SINE Alu 0 311 1 2093 215 45 39 chr3 36651521 36652053 -190872525 - L1MB7 LINE L1 -4584 1800 1262 * 11472 195 37 21 chr3 36652029 36652414 -190872164 - L1MA4A LINE L1 -274 6265 5888 1927 180 71 17 chr3 36652414 36652820 -190871758 + MSTA LTR MaLR 1 428 0 11472 195 37 21 chr3 36652820 36654307 -190870271 - L1MA4A LINE L1 -651 5888 4427 186 43 0 0 chr3 36654307 36654330 -190870248 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11472 195 37 21 chr3 36654330 36655934 -190868644 - L1MA4A LINE L1 -2112 4427 2720 10030 243 53 49 chr3 36655936 36658825 -190865753 - L1MA4A LINE L1 -3945 2904 6 379 303 43 25 chr3 36660272 36660434 -190864144 - MLT1J2 LTR MaLR 0 450 286 299 284 59 10 chr3 36660531 36660633 -190863945 - MLT1J2 LTR MaLR -302 148 42 322 214 92 10 chr3 36661033 36661131 -190863447 + MIR3 SINE MIR 102 207 -1 311 306 33 25 chr3 36661629 36661750 -190862828 + MIR SINE MIR 32 153 -109 2497 67 0 3 chr3 36661766 36662078 -190862500 - AluY SINE Alu 0 311 1 315 71 0 0 chr3 36663136 36663178 -190861400 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 362 285 6 44 chr3 36663354 36663512 -190861066 + CT-rich Low_complexity Low_complexity 1 152 0 1240 214 133 41 chr3 36663653 36664065 -190860513 - MLT1C LTR MaLR 0 467 18 602 236 129 0 chr3 36666487 36666641 -190857937 + MER5A DNA MER1_type 4 180 -9 754 226 162 4 chr3 36667843 36668078 -190856500 - MLT1L LTR MaLR -2 613 342 533 250 169 7 chr3 36668433 36668581 -190855997 - MER5A DNA MER1_type -9 180 9 1753 187 7 3 chr3 36668893 36669192 -190855386 + AluSx SINE Alu 1 300 -12 437 203 77 4 chr3 36669703 36669827 -190854751 + MER3 DNA MER1_type 1 140 -69 23 68 0 0 chr3 36670052 36670096 -190854482 + AT_rich Low_complexity Low_complexity 1 44 0 220 143 24 0 chr3 36670758 36670800 -190853778 + (TA)n Simple_repeat Simple_repeat 2 44 0 318 277 34 42 chr3 36670800 36671038 -190853540 + L1ME LINE L1 5544 5779 -342 2268 98 0 3 chr3 36671325 36671648 -190852930 - AluSq SINE Alu 0 322 1 235 262 162 24 chr3 36671997 36672204 -190852374 - MLT1J LTR MaLR -72 543 232 21 36 0 0 chr3 36672581 36672609 -190851969 + AT_rich Low_complexity Low_complexity 1 28 0 1122 262 85 29 chr3 36672710 36673088 -190851490 - LTR16C LTR ERVL -22 469 71 476 329 33 7 chr3 36673227 36673379 -190851199 - MIR SINE MIR -101 161 6 482 194 10 41 chr3 36674353 36674451 -190850127 - MER63A DNA MER1_type -6 204 110 590 285 54 31 chr3 36674451 36674711 -190849867 - L1ME3 LINE L1 -83 6079 5814 732 123 31 223 chr3 36674721 36675013 -190849565 + MER33 DNA MER1_type 2 237 -87 1519 211 67 13 chr3 36675014 36675402 -190849176 - MLT1C LTR MaLR 0 467 59 461 187 33 0 chr3 36675454 36675545 -190849033 + MER33 DNA MER1_type 231 324 0 2189 124 0 0 chr3 36675716 36676014 -190848564 + AluSx SINE Alu 1 298 -14 229 266 71 0 chr3 36676045 36676158 -190848420 - L1MEc LINE L1 -5267 1129 1009 2086 143 0 6 chr3 36677956 36678270 -190846308 - AluSx SINE Alu 0 312 1 1708 263 57 11 chr3 36678500 36679044 -190845534 - L1ME2 LINE L1 -9 6950 6382 1001 257 84 60 chr3 36679071 36679450 -190845128 - L1ME2 LINE L1 -3925 3197 2828 858 267 32 5 chr3 36679450 36679667 -190844911 + MER58A DNA MER1_type 2 224 0 1001 257 84 60 chr3 36679667 36679847 -190844731 - L1ME2 LINE L1 -4294 2828 2621 1801 150 10 38 chr3 36679847 36680160 -190844418 - AluSx SINE Alu -8 304 1 1001 257 84 60 chr3 36680160 36680195 -190844383 - L1ME2 LINE L1 -4501 2621 2588 1454 251 53 55 chr3 36680233 36680382 -190844196 - L1ME2 LINE L1 -4690 2432 2284 2208 104 7 3 chr3 36680382 36680689 -190843889 + AluSq SINE Alu 1 308 -5 1454 251 53 55 chr3 36680689 36681307 -190843271 - L1ME2 LINE L1 -4838 2284 1666 627 306 17 13 chr3 36681349 36681581 -190842997 - L1ME2 LINE L1 -4968 1455 1223 245 282 68 19 chr3 36682049 36682152 -190842426 - L1ME2 LINE L1 -5294 1129 1022 483 238 90 63 chr3 36682155 36682344 -190842234 - L1ME2 LINE L1 -5981 442 249 3504 214 27 9 chr3 36682357 36683198 -190841380 - L1P LINE L1 -921 5225 4370 * 5176 135 15 4 chr3 36683196 36684019 -190840559 + L1PA16 LINE L1 5327 6158 -8 7275 42 1 0 chr3 36684079 36684971 -190839607 - L1PA5 LINE L1 -1376 4770 3878 7168 46 10 1 chr3 36684971 36686357 -190838221 + L1PA5 LINE L1 4761 6154 0 324 251 47 93 chr3 36686365 36686580 -190837998 - L1ME2 LINE L1 -6200 223 19 3924 170 41 10 chr3 36687733 36688516 -190836062 - L1PA16 LINE L1 0 6166 5360 23 0 0 0 chr3 36689150 36689173 -190835405 + AT_rich Low_complexity Low_complexity 1 23 0 390 203 0 0 chr3 36689205 36689274 -190835304 + MER5A DNA MER1_type 1 69 -120 380 316 8 8 chr3 36689274 36689304 -190835274 - L1MA10 LINE L1 -27 6307 6278 503 296 28 33 chr3 36689304 36689517 -190835061 - L1ME1 LINE L1 -47 6119 5908 2411 176 26 36 chr3 36689523 36690057 -190834521 - L1MC2 LINE L1 0 6344 5816 21 0 0 0 chr3 36690057 36690078 -190834500 + AT_rich Low_complexity Low_complexity 1 21 0 648 213 8 0 chr3 36690078 36690200 -190834378 - FLAM_C SINE Alu -18 125 3 2810 186 51 3 chr3 36690202 36690816 -190833762 - L1MC2 LINE L1 -519 5825 5185 1636 230 29 36 chr3 36690822 36691028 -190833550 - L1ME1 LINE L1 -272 5894 5688 1570 204 3 7 chr3 36691028 36691322 -190833256 - AluJb SINE Alu -18 294 2 1636 230 29 36 chr3 36691322 36691562 -190833016 - L1ME1 LINE L1 -478 5688 5451 267 200 63 42 chr3 36691560 36691655 -190832923 - L1ME1 LINE L1 -1364 4782 4686 * 698 277 94 0 chr3 36691737 36691950 -190832628 + Charlie1 DNA MER1_type 6 238 -2523 497 238 8 8 chr3 36691937 36692059 -190832519 + Charlie1 DNA MER1_type 2623 2744 -17 * 2822 169 9 30 chr3 36693581 36694497 -190830081 + L1P4 LINE L1 4876 5768 -395 207 0 0 0 chr3 36694499 36694522 -190830056 + (TA)n Simple_repeat Simple_repeat 1 23 0 1615 143 0 4 chr3 36694690 36694962 -190829616 - AluY SINE Alu -40 271 1 2997 150 3 22 chr3 36695801 36696468 -190828110 + L1PA16 LINE L1 5135 5768 -398 459 194 0 0 chr3 36696471 36696564 -190828014 + (TA)n Simple_repeat Simple_repeat 2 94 0 2364 118 10 15 chr3 36696564 36696773 -190827805 + L1PA16 LINE L1 5776 5984 -182 1801 149 49 35 chr3 36696773 36697143 -190827435 - THE1C LTR MaLR 0 375 1 2364 118 10 15 chr3 36697143 36697323 -190827255 + L1PA16 LINE L1 5984 6163 -3 32 57 0 0 chr3 36697737 36697790 -190826788 + AT_rich Low_complexity Low_complexity 1 53 0 691 194 4 15 chr3 36697984 36698224 -190826354 + AluJb SINE Alu 3 298 -14 414 0 0 0 chr3 36698406 36698452 -190826126 + (TG)n Simple_repeat Simple_repeat 1 46 0 2304 85 0 3 chr3 36698895 36699200 -190825378 + AluY SINE Alu 1 304 -7 562 299 26 0 chr3 36699658 36699812 -190824766 - MER63A DNA MER1_type 0 210 53 468 246 120 42 chr3 36700168 36700335 -190824243 - MER5A DNA MER1_type 0 189 10 231 114 0 0 chr3 36700497 36700532 -190824046 + (T)n Simple_repeat Simple_repeat 1 35 0 265 265 29 0 chr3 36701891 36701959 -190822619 + GA-rich Low_complexity Low_complexity 3 72 0 2898 6 0 0 chr3 36703293 36703610 -190820968 + AluYb8 SINE Alu 1 317 -1 391 147 29 0 chr3 36703642 36703710 -190820868 - L1MC3 LINE L1 -19 7766 7697 710 172 18 61 chr3 36703725 36703888 -190820690 - L1MC3 LINE L1 -278 7507 7352 636 210 19 6 chr3 36703888 36704045 -190820533 + L1MD1 LINE L1 6083 6241 -1 185 0 40 0 chr3 36704899 36704924 -190819654 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1119 234 9 0 chr3 36706292 36706514 -190818064 - MER58A DNA MER1_type 0 224 1 1999 152 63 78 chr3 36707868 36708342 -190816236 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr3 36709323 36709345 -190815233 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 68 75 chr3 36709621 36709913 -190814665 + L1MEd LINE L1 513 802 -5317 249 327 38 6 chr3 36710076 36710235 -190814343 + L1MEd LINE L1 904 1067 -5052 473 320 8 0 chr3 36710423 36710682 -190813896 + L1MEd LINE L1 2587 2847 -3282 770 286 116 45 chr3 36710887 36711481 -190813097 - HAL1 LINE L1 -621 1886 1251 337 341 118 4 chr3 36711567 36711796 -190812782 + MIR SINE MIR 8 262 0 341 332 153 26 chr3 36711811 36712124 -190812454 - HAL1 LINE L1 -1365 1142 790 21 0 0 0 chr3 36712443 36712464 -190812114 + AT_rich Low_complexity Low_complexity 1 21 0 559 227 86 73 chr3 36712554 36712681 -190811897 + MER58A DNA MER1_type 2 135 -2285 1709 133 53 30 chr3 36712681 36712982 -190811596 + AluSg1 SINE Alu 2 309 0 559 227 86 73 chr3 36712982 36713074 -190811504 + MER58A DNA MER1_type 135 224 0 25 51 0 0 chr3 36713158 36713197 -190811381 + AT_rich Low_complexity Low_complexity 1 39 0 3939 161 38 13 chr3 36713290 36714667 -190809911 + L1MB3 LINE L1 18 1602 -4782 * 4458 203 26 8 chr3 36714655 36715681 -190808897 + L1MB3 LINE L1 5354 6416 -3 3877 234 65 18 chr3 36715683 36716784 -190807794 + L1MD2 LINE L1 5186 6340 -19 219 88 0 0 chr3 36716916 36716950 -190807628 + (TC)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 36717845 36717869 -190806709 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 36719437 36719473 -190805105 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 36719568 36719596 -190804982 + AT_rich Low_complexity Low_complexity 1 28 0 504 0 0 0 chr3 36719680 36719736 -190804842 + (TG)n Simple_repeat Simple_repeat 2 57 0 1423 24 0 0 chr3 36720126 36720330 -190804248 + L1PA4 LINE L1 5972 6175 0 180 0 0 0 chr3 36720368 36720388 -190804190 + (TAA)n Simple_repeat Simple_repeat 2 21 0 675 232 11 50 chr3 36720513 36720694 -190803884 - MER69A DNA AcHobo 0 177 4 517 173 45 0 chr3 36721020 36721130 -190803448 + L1MA4 LINE L1 6181 6295 -5 419 233 6 126 chr3 36722422 36722581 -190801997 + MIR SINE MIR 3 142 -120 7698 227 68 33 chr3 36722616 36722977 -190801601 - L1MC/D LINE L1 -502 6134 5787 1619 201 3 10 chr3 36722977 36723280 -190801298 - AluJo SINE Alu -11 301 1 7698 227 68 33 chr3 36723280 36724134 -190800444 - L1MC/D LINE L1 -849 5787 4964 24 0 0 0 chr3 36724134 36724158 -190800420 + AT_rich Low_complexity Low_complexity 1 24 0 7698 227 68 33 chr3 36724158 36724378 -190800200 - L1MC/D LINE L1 -1672 4964 4753 2174 117 0 0 chr3 36724378 36724676 -190799902 - AluSx SINE Alu -14 298 1 7698 227 68 33 chr3 36724676 36727908 -190796670 - L1MC/D LINE L1 -1883 4753 1167 1475 189 3 54 chr3 36727914 36728018 -190796560 + AluJb SINE Alu 7 115 -197 2616 118 0 3 chr3 36728018 36728383 -190796195 + THE1B LTR MaLR 1 364 0 10062 122 18 28 chr3 36728383 36729979 -190794599 + THE1B-int LTR MaLR 1 1580 0 2472 86 5 62 chr3 36729981 36730365 -190794213 + THE1B LTR MaLR 3 364 0 1475 189 3 54 chr3 36730365 36730569 -190794009 + AluJb SINE Alu 115 303 -9 4108 250 84 6 chr3 36730571 36731636 -190792942 - L1MC/D LINE L1 -5367 1173 26 180 0 0 0 chr3 36731687 36731707 -190792871 + (TA)n Simple_repeat Simple_repeat 2 21 0 717 249 6 45 chr3 36732219 36732396 -190792182 + MER5A DNA MER1_type 1 170 -19 353 286 191 6 chr3 36732451 36732619 -190791959 + MIR SINE MIR 64 262 0 475 273 201 5 chr3 36733533 36733742 -190790836 - MIR SINE MIR 0 262 13 182 422 60 18 chr3 36734303 36734521 -190790057 + L3 LINE CR1 209 435 -1142 770 68 0 0 chr3 36735474 36735577 -190789001 + AluY SINE Alu 209 311 0 462 270 104 74 chr3 36736017 36736247 -190788331 - MIR SINE MIR -11 251 15 470 255 60 13 chr3 36736398 36736547 -190788031 - L1ME3A LINE L1 -9 6161 6006 902 272 51 44 chr3 36736559 36736878 -190787700 - L1ME3A LINE L1 -404 5766 5442 2416 46 30 16 chr3 36736878 36737183 -190787395 - AluY SINE Alu 0 311 3 902 272 51 44 chr3 36737183 36737253 -190787325 - L1ME3A LINE L1 -728 5442 5374 253 256 49 12 chr3 36739269 36739351 -190785227 + MLT1K LTR MaLR 504 588 0 252 59 0 0 chr3 36739405 36739439 -190785139 + (T)n Simple_repeat Simple_repeat 1 34 0 309 231 0 26 chr3 36739884 36739962 -190784616 - L1P LINE L1 -1052 5094 5019 537 89 13 0 chr3 36739963 36740042 -190784536 - MER57B-int LTR ERV1 -2151 5386 5307 * 1330 153 32 20 chr3 36740033 36740603 -190783975 - MER57B-int LTR ERV1 -1986 4277 734 23804 78 8 4 chr3 36740603 36744724 -190779854 - L1PA7 LINE L1 0 6154 2020 2537 160 30 0 chr3 36744746 36745152 -190779426 - MER57B-int LTR ERV1 -5241 705 288 * 4175 151 21 6 chr3 36745149 36745811 -190778767 - MER57B-int LTR ERV1 -6865 672 1 2892 125 7 0 chr3 36745811 36746242 -190778336 - MER57B LTR ERV1 0 434 1 1147 138 0 0 chr3 36746246 36746427 -190778151 + L1PB3 LINE L1 20 200 -6663 5724 108 200 15 chr3 36746429 36747435 -190777143 + L1PB3 LINE L1 636 1827 -5036 8396 214 25 24 chr3 36747437 36749522 -190775056 + L1PB3 LINE L1 3816 5901 -961 1223 201 61 4 chr3 36749525 36749788 -190774790 - L1 LINE L1 -1777 4369 4092 5757 95 44 0 chr3 36749788 36750359 -190774219 + L1PB1 LINE L1 5190 5816 -335 351 0 0 0 chr3 36750359 36750398 -190774180 + (TA)n Simple_repeat Simple_repeat 1 39 0 5757 95 44 0 chr3 36750398 36750750 -190773828 + L1PB1 LINE L1 5816 6151 0 5066 117 42 9 chr3 36750757 36751567 -190773011 + L1PB3 LINE L1 6030 6866 -4 937 242 54 4 chr3 36751738 36751998 -190772580 + ORSL DNA AcHobo 1 273 -2 35 54 0 0 chr3 36755088 36755144 -190769434 + AT_rich Low_complexity Low_complexity 1 56 0 792 223 73 15 chr3 36755144 36755350 -190769228 + MER20 DNA MER1_type 1 218 -1 228 67 0 0 chr3 36755369 36755399 -190769179 + (TATG)n Simple_repeat Simple_repeat 3 32 0 481 256 8 16 chr3 36755999 36756120 -190768458 + MER5C DNA MER1_type 1 120 -204 1151 142 0 0 chr3 36756316 36756492 -190768086 + AluSg/x SINE Alu 128 303 -9 894 274 94 32 chr3 36756736 36757109 -190767469 - MLT1I LTR MaLR -8 401 6 186 293 259 26 chr3 36757258 36757374 -190767204 + MIR SINE MIR 54 196 -66 10547 182 49 6 chr3 36758107 36761006 -190763572 - L1PA15 LINE L1 -266 5899 2877 1582 181 58 4 chr3 36761068 36761344 -190763234 + AluSx SINE Alu 3 293 -19 1145 236 97 20 chr3 36761515 36761962 -190762616 + MLT1H LTR MaLR 5 526 -4 515 194 0 0 chr3 36762126 36762229 -190762349 - MLT1D LTR MaLR 0 505 403 2213 250 38 2 chr3 36762235 36762815 -190761763 - MLT1D-int LTR MaLR -765 606 6 1684 200 63 78 chr3 36762820 36763330 -190761248 - MLT1D LTR MaLR 0 505 4 1597 146 42 0 chr3 36763759 36764022 -190760556 + AluSg SINE Alu 35 307 0 219 145 13 26 chr3 36764169 36764245 -190760333 + (TATAA)n Simple_repeat Simple_repeat 2 76 0 477 371 25 17 chr3 36765540 36765780 -190758798 + MIR SINE MIR 2 243 -19 180 348 0 0 chr3 36766388 36766434 -190758144 - MIR SINE MIR 0 262 217 338 244 118 16 chr3 36767537 36767664 -190756914 - MER117 DNA MER1_type -50 147 8 846 191 52 0 chr3 36767963 36768173 -190756405 + L1MA4 LINE L1 6074 6294 -6 416 263 184 66 chr3 36770892 36771257 -190753321 + MLT1H LTR MaLR 130 537 -12 2341 60 0 3 chr3 36771573 36771881 -190752697 + AluY SINE Alu 1 307 0 344 266 71 9 chr3 36772202 36772315 -190752263 + L2 LINE L2 3192 3311 -2 223 333 0 29 chr3 36772433 36772502 -190752076 + L2 LINE L2 3200 3266 -6 6913 146 15 12 chr3 36773545 36774712 -190749866 - L1PA14 LINE L1 -1 6160 4990 1846 162 0 3 chr3 36774712 36775002 -190749576 - AluSx SINE Alu -23 289 1 6913 146 15 12 chr3 36775002 36775976 -190748602 - L1PA14 LINE L1 -1171 4990 4020 1248 224 6 22 chr3 36775975 36776297 -190748281 + L1P LINE L1 2644 2960 -3186 * 4783 183 43 18 chr3 36778587 36778790 -190745788 + L1P LINE L1 2941 3137 -3009 2008 145 0 3 chr3 36778790 36779079 -190745499 + AluSq SINE Alu 1 288 -25 4783 183 43 18 chr3 36779079 36779918 -190744660 + L1P LINE L1 3137 4009 -2137 264 267 13 27 chr3 36779919 36779994 -190744584 - L2 LINE L2 -20 3293 3220 521 259 0 0 chr3 36780026 36780134 -190744444 - MIR SINE MIR -149 113 6 391 154 13 0 chr3 36780144 36780222 -190744356 - L1MC2 LINE L1 -1 6343 6265 257 366 105 41 chr3 36780380 36780798 -190743780 - L2 LINE L2 0 3272 2828 365 314 40 0 chr3 36781662 36781786 -190742792 - MLT1J LTR MaLR -112 399 271 221 282 69 40 chr3 36781834 36781905 -190742673 - L2 LINE L2 -2442 872 805 1633 99 177 4 chr3 36781905 36782172 -190742406 + AluSg1 SINE Alu 1 309 0 221 282 69 40 chr3 36782172 36782273 -190742305 - L2 LINE L2 -2509 805 694 11621 247 47 34 chr3 36782347 36789666 -190734912 - L1PB3 LINE L1 -2 6868 3 22 0 0 0 chr3 36789681 36789703 -190734875 + AT_rich Low_complexity Low_complexity 1 22 0 229 295 54 30 chr3 36789981 36790147 -190734431 - HAL1b LINE L1 -442 906 737 22 70 0 0 chr3 36790309 36790352 -190734226 + AT_rich Low_complexity Low_complexity 1 43 0 801 295 75 106 chr3 36790688 36791444 -190733134 - HAL1 LINE L1 -961 1546 814 265 382 16 0 chr3 36791660 36791783 -190732795 - LTR67 LTR ERVL -2 555 431 384 354 24 41 chr3 36791895 36792141 -190732437 - LTR67 LTR ERVL -296 261 20 1073 232 9 0 chr3 36792846 36793066 -190731512 - MER58A DNA MER1_type -2 222 1 21 0 0 0 chr3 36793623 36793644 -190730934 + AT_rich Low_complexity Low_complexity 1 21 0 688 261 29 24 chr3 36794604 36794811 -190729767 + MIR SINE MIR 1 208 -54 405 198 47 0 chr3 36794870 36794956 -190729622 - MER5A DNA MER1_type -83 106 17 215 222 0 0 chr3 36795014 36795059 -190729519 + (CAT)n Simple_repeat Simple_repeat 1 45 0 195 281 31 16 chr3 36795105 36795169 -190729409 + L2 LINE L2 3171 3235 -78 209 328 62 8 chr3 36795246 36795374 -190729204 + L2 LINE L2 2221 2355 -959 5014 169 31 6 chr3 36795787 36796437 -190728141 + L1M1 LINE L1 4310 4942 -1358 306 50 0 0 chr3 36796437 36796477 -190728101 + (TC)n Simple_repeat Simple_repeat 1 40 0 5014 169 31 6 chr3 36796477 36797091 -190727487 + L1M1 LINE L1 4942 5607 -693 * 32176 36 38 2 chr3 36797089 36801091 -190723487 - L1P LINE L1 -1999 4147 2 719 296 109 57 chr3 36801261 36801931 -190722647 - HAL1 LINE L1 -1163 1344 640 585 339 53 12 chr3 36802047 36802369 -190722209 - HAL1 LINE L1 -2090 417 83 1703 188 7 13 chr3 36802375 36802679 -190721899 + AluSx SINE Alu 1 302 -10 411 56 0 0 chr3 36803074 36803128 -190721450 + (TG)n Simple_repeat Simple_repeat 1 54 0 540 301 77 29 chr3 36803828 36804074 -190720504 - MIR SINE MIR 0 262 5 1837 115 41 4 chr3 36805089 36805358 -190719220 + AluSg SINE Alu 14 292 -18 23 0 0 0 chr3 36805373 36805396 -190719182 + AT_rich Low_complexity Low_complexity 1 23 0 1003 182 155 54 chr3 36805458 36805754 -190718824 + MLT1A1 LTR MaLR 1 326 -39 248 314 92 22 chr3 36806094 36806279 -190718299 - LTR33A LTR ERVL -27 496 299 189 147 0 0 chr3 36806416 36806450 -190718128 + (TA)n Simple_repeat Simple_repeat 1 34 0 495 321 69 33 chr3 36806581 36807014 -190717564 - L1M4 LINE L1 -2644 3502 3047 220 227 0 15 chr3 36807023 36807089 -190717489 + (TA)n Simple_repeat Simple_repeat 2 66 0 307 250 136 21 chr3 36807381 36807521 -190717057 - L1MEd LINE L1 -5283 836 681 2239 135 34 17 chr3 36807714 36808070 -190716508 + THE1B LTR MaLR 1 362 -2 10773 108 33 1 chr3 36808072 36809603 -190714975 + THE1B-int LTR MaLR 1 1580 0 2410 133 11 0 chr3 36809603 36809963 -190714615 + THE1B LTR MaLR 1 364 0 904 188 19 48 chr3 36810060 36810267 -190714311 - MLT1A2 LTR MaLR 0 374 174 320 164 15 0 chr3 36810271 36810338 -190714240 + GA-rich Low_complexity Low_complexity 1 68 0 717 200 48 14 chr3 36810338 36810483 -190714095 - MLT1A2 LTR MaLR -189 176 27 2073 118 0 51 chr3 36812298 36812612 -190711966 - AluSx SINE Alu -14 298 1 1995 143 0 3 chr3 36813461 36813762 -190710816 - AluSc SINE Alu -9 300 1 26 30 0 0 chr3 36815068 36815101 -190709477 + AT_rich Low_complexity Low_complexity 1 33 0 237 310 28 0 chr3 36815174 36815245 -190709333 + HsTC2 DNA Tc2 1 73 -1825 346 255 6 104 chr3 36815303 36815374 -190709204 + HsTC2 DNA Tc2 1144 1220 -678 2636 90 3 0 chr3 36815374 36815728 -190708850 + THE1A LTR MaLR 1 355 0 346 255 6 104 chr3 36815728 36815790 -190708788 + HsTC2 DNA Tc2 1220 1287 -611 5052 73 15 0 chr3 36815790 36816462 -190708116 - L1PA8 LINE L1 0 6172 5491 346 255 6 104 chr3 36816462 36816586 -190707992 + HsTC2 DNA Tc2 1287 1543 -355 256 247 99 12 chr3 36817367 36817448 -190707130 - MIR SINE MIR -74 188 101 8054 37 1 1 chr3 36817448 36818443 -190706135 - L1P LINE L1 -3052 3094 2100 7390 32 6 9 chr3 36818443 36819432 -190705146 + L1PA3 LINE L1 4916 5909 -246 2740 13 0 0 chr3 36819432 36819732 -190704846 - AluYa5 SINE Alu -11 300 1 7390 32 6 9 chr3 36819732 36819979 -190704599 + L1PA3 LINE L1 5909 6155 0 332 321 9 0 chr3 36820455 36820561 -190704017 + MIR3 SINE MIR 102 208 0 728 151 8 0 chr3 36820592 36820711 -190703867 + AluJb SINE Alu 1 120 -192 2075 157 94 0 chr3 36820752 36821147 -190703431 + MSTB1 LTR MaLR 1 432 0 232 254 48 56 chr3 36821286 36821412 -190703166 + MIR SINE MIR 74 198 -64 308 299 29 29 chr3 36821977 36822114 -190702464 - MER5A DNA MER1_type -6 183 47 3861 146 23 0 chr3 36823210 36823861 -190700717 + L1PA16 LINE L1 5496 6161 -5 27 62 0 0 chr3 36823903 36823951 -190700627 + AT_rich Low_complexity Low_complexity 1 48 0 368 289 182 13 chr3 36824308 36824467 -190700111 + MIR SINE MIR 11 196 -66 235 308 128 8 chr3 36826430 36826547 -190698031 - L2 LINE L2 -1 3312 3182 193 222 0 37 chr3 36826700 36826754 -190697824 - L2 LINE L2 -240 3073 3022 337 227 23 31 chr3 36826793 36826921 -190697657 - L1ME4a LINE L1 -5 6116 5990 180 313 62 42 chr3 36827256 36827352 -190697226 + MIR SINE MIR 165 262 0 29 28 0 0 chr3 36827498 36827534 -190697044 + AT_rich Low_complexity Low_complexity 1 36 0 863 309 83 47 chr3 36827726 36828277 -190696301 + MLT1K LTR MaLR 10 580 -8 327 302 87 27 chr3 36830569 36830718 -190693860 + MIR SINE MIR 61 218 -44 504 277 31 31 chr3 36830740 36830899 -190693679 - MIR SINE MIR -28 234 76 222 62 0 0 chr3 36833978 36834010 -190690568 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2144 133 3 0 chr3 36834010 36834312 -190690266 - AluSx SINE Alu -9 303 1 2294 108 0 13 chr3 36834858 36835173 -190689405 + AluSx SINE Alu 1 311 -1 475 207 0 11 chr3 36835799 36835886 -190688692 + MER5A DNA MER1_type 2 87 -102 187 325 115 58 chr3 36835976 36836167 -190688411 - L3b LINE CR1 -5 1578 1377 1870 165 0 10 chr3 36836275 36836578 -190688000 - AluSx SINE Alu -12 300 1 1657 191 27 12 chr3 36837900 36838236 -190686342 - MER58B DNA MER1_type 0 341 1 316 196 0 0 chr3 36839715 36839771 -190684807 - MER103 DNA DNA -52 114 59 22 35 0 0 chr3 36839973 36840002 -190684576 + AT_rich Low_complexity Low_complexity 1 29 0 1132 144 90 0 chr3 36840357 36840558 -190684020 - MER20 DNA MER1_type 0 219 1 189 107 0 0 chr3 36841556 36841584 -190682994 + (GGGAA)n Simple_repeat Simple_repeat 2 29 0 492 231 22 7 chr3 36843032 36843217 -190681361 - MER58A DNA MER1_type 0 224 5 285 312 0 0 chr3 36844136 36844213 -190680365 + CT-rich Low_complexity Low_complexity 2 78 0 348 278 7 86 chr3 36844297 36844448 -190680130 + L2 LINE L2 2586 2724 -590 277 308 112 0 chr3 36844765 36844872 -190679706 + L2 LINE L2 3190 3308 -5 31 0 0 0 chr3 36845489 36845520 -190679058 + AT_rich Low_complexity Low_complexity 1 31 0 1514 215 3 10 chr3 36845520 36845818 -190678760 - AluJo SINE Alu -16 296 1 260 275 9 9 chr3 36846136 36846245 -190678333 + (TA)n Simple_repeat Simple_repeat 2 110 0 431 284 78 27 chr3 36846360 36846698 -190677880 - MLT1L LTR MaLR -52 563 108 2220 109 0 3 chr3 36846997 36847301 -190677277 + AluSc SINE Alu 1 303 -6 183 129 0 0 chr3 36847398 36847429 -190677149 + (TATG)n Simple_repeat Simple_repeat 2 32 0 211 205 0 0 chr3 36847613 36847652 -190676926 + CT-rich Low_complexity Low_complexity 2 40 0 3377 200 32 20 chr3 36848503 36849258 -190675320 - L1MB3 LINE L1 -2 6181 5418 180 0 0 0 chr3 36849513 36849533 -190675045 + (T)n Simple_repeat Simple_repeat 1 20 0 611 310 10 5 chr3 36849570 36849770 -190674808 - L2 LINE L2 -1 3312 3112 1592 211 141 98 chr3 36849774 36850399 -190674179 - MLT1E1 LTR MaLR -2 652 1 491 289 80 30 chr3 36850511 36850712 -190673866 - L2 LINE L2 -337 2977 2767 2419 172 32 22 chr3 36850864 36851364 -190673214 - L1MC2 LINE L1 -26 6318 5814 1365 180 20 0 chr3 36851381 36851631 -190672947 - L1PA16 LINE L1 -10 6156 5902 267 79 0 0 chr3 36853293 36853331 -190671247 + (CA)n Simple_repeat Simple_repeat 1 38 0 5983 147 73 30 chr3 36853348 36853968 -190670610 - Tigger3b DNA MER2_type -1798 1230 638 2184 125 0 7 chr3 36853968 36854272 -190670306 - AluSx SINE Alu -10 302 1 5983 147 73 30 chr3 36854272 36854830 -190669748 - Tigger3b DNA MER2_type -2390 638 1 2600 62 0 0 chr3 36854951 36855260 -190669318 - AluY SINE Alu -2 309 1 1035 193 18 49 chr3 36855576 36855799 -190668779 + MER58A DNA MER1_type 7 222 -2 196 245 191 11 chr3 36856771 36856865 -190667713 + L2 LINE L2 2170 2280 -1034 435 347 21 7 chr3 36856895 36857039 -190667539 + L2 LINE L2 3123 3268 -4 248 218 0 13 chr3 36857487 36857565 -190667013 + GA-rich Low_complexity Low_complexity 4 80 0 631 268 33 38 chr3 36857737 36857950 -190666628 - MIR SINE MIR -50 212 1 298 345 148 27 chr3 36857968 36858189 -190666389 - MIR SINE MIR -14 248 1 256 48 48 0 chr3 36859379 36859421 -190665157 + (CA)n Simple_repeat Simple_repeat 2 45 0 2171 75 0 0 chr3 36859907 36860174 -190664404 + AluY SINE Alu 34 300 -11 2144 123 0 3 chr3 36861172 36861474 -190663104 - AluSq SINE Alu -12 301 1 531 261 112 21 chr3 36861836 36862024 -190662554 + MIR SINE MIR 57 261 -1 325 306 153 28 chr3 36862215 36862431 -190662147 + LTR16C LTR ERVL 67 309 -182 3889 144 69 90 chr3 36862447 36863363 -190661215 - MER4D LTR ERV1 0 872 1 180 0 0 0 chr3 36863467 36863487 -190661091 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 626 284 7 58 chr3 36863539 36863814 -190660764 + MIR SINE MIR 2 262 0 2241 230 42 76 chr3 36864348 36864922 -190659656 - L1ME2 LINE L1 -1 6163 5571 2273 103 3 0 chr3 36864922 36865224 -190659354 - AluSg SINE Alu -7 303 1 2070 119 7 7 chr3 36865226 36865521 -190659057 - AluSq SINE Alu -18 295 1 2241 230 42 76 chr3 36865521 36865547 -190659031 - L1ME2 LINE L1 -594 5570 5545 2294 87 10 0 chr3 36865547 36865846 -190658732 + AluSp SINE Alu 1 302 -11 2241 230 42 76 chr3 36865846 36866101 -190658477 - L1ME2 LINE L1 -619 5545 5333 1008 326 45 0 chr3 36866334 36866665 -190657913 + LTR16C LTR ERVL 138 483 -8 2198 114 0 0 chr3 36867548 36867838 -190656740 - AluY SINE Alu -21 290 1 352 345 54 37 chr3 36867878 36868174 -190656404 - L2 LINE L2 -979 2335 2035 331 248 200 0 chr3 36871514 36871639 -190652939 + L1MC/D LINE L1 5543 5692 -2116 784 271 77 92 chr3 36871693 36872415 -190652163 - L2 LINE L2 -1 3312 2616 776 290 57 4 chr3 36872677 36872747 -190651831 - MIR SINE MIR 0 262 197 333 0 0 0 chr3 36872747 36872784 -190651794 + (CA)n Simple_repeat Simple_repeat 1 37 0 776 290 57 4 chr3 36872784 36872961 -190651617 - MIR SINE MIR -65 197 2 2096 206 20 39 chr3 36874110 36874621 -190649957 - MLT1D LTR MaLR 0 505 5 180 111 0 0 chr3 36875553 36875580 -190648998 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr3 36875844 36875864 -190648714 + (A)n Simple_repeat Simple_repeat 1 20 0 765 244 205 21 chr3 36876538 36876675 -190647903 + Charlie2 DNA MER1_type 28 139 -2723 449 229 98 0 chr3 36876675 36876797 -190647781 - MER94 DNA DNA 0 134 1 765 244 205 21 chr3 36876797 36876991 -190647587 + Charlie2 DNA MER1_type 139 420 -2442 476 192 83 0 chr3 36877001 36877121 -190647457 + Charlie2 DNA MER1_type 2729 2858 -4 273 264 47 28 chr3 36877395 36877501 -190647077 - MLT1L LTR MaLR -2 613 506 1384 272 70 93 chr3 36877509 36878109 -190646469 + MLT1G LTR MaLR 10 590 0 295 264 0 0 chr3 36878131 36878203 -190646375 - MLT1L LTR MaLR -131 484 413 2741 135 28 12 chr3 36878342 36878838 -190645740 - L1MA8 LINE L1 -5 7705 7202 910 192 77 0 chr3 36878869 36879051 -190645527 - L1MA8 LINE L1 -709 7001 6806 3784 192 25 15 chr3 36879052 36879937 -190644641 - L1MA8 LINE L1 -2368 5197 4304 589 178 89 6 chr3 36879931 36880088 -190644490 - L1MA8 LINE L1 -3968 3597 3428 * 2367 249 70 12 chr3 36880108 36880203 -190644375 - L1 LINE L1 -3240 3866 3778 381 22 0 0 chr3 36880203 36880249 -190644329 + (TA)n Simple_repeat Simple_repeat 2 47 0 2367 249 70 12 chr3 36880249 36881140 -190643438 - L1 LINE L1 -3328 3778 2815 721 215 0 0 chr3 36881159 36881289 -190643289 - FLAM_C SINE Alu -11 132 3 2676 239 133 45 chr3 36881294 36882709 -190641869 - L1 LINE L1 -4324 2782 1433 2321 173 33 74 chr3 36882709 36883287 -190641291 - MLT2B3 LTR ERVL 0 554 1 2676 239 133 45 chr3 36883287 36883915 -190640663 - L1 LINE L1 -5673 1433 861 269 305 24 0 chr3 36883917 36883999 -190640579 - MLT1L LTR MaLR -531 84 1 27 18 7 0 chr3 36884111 36884187 -190640391 + AT_rich Low_complexity Low_complexity 1 34 0 239 273 0 142 chr3 36884441 36884617 -190639961 - L2 LINE L2 -2 3311 3161 435 358 33 17 chr3 36884712 36884952 -190639626 + MIR SINE MIR 15 258 -4 25 51 0 0 chr3 36885715 36885754 -190638824 + AT_rich Low_complexity Low_complexity 1 39 0 500 231 146 42 chr3 36886733 36887041 -190637537 - L1ME3A LINE L1 -225 5945 5606 365 274 57 5 chr3 36887105 36887317 -190637261 - L1ME3A LINE L1 -786 5360 5138 342 285 93 104 chr3 36887784 36888332 -190636246 - L1MC4a LINE L1 -1914 5894 5353 279 179 18 0 chr3 36890219 36890275 -190634303 - MIR SINE MIR -11 251 195 841 322 79 15 chr3 36890293 36890697 -190633881 - MLT1J2 LTR MaLR -18 432 3 537 306 109 30 chr3 36890717 36891149 -190633429 - L2 LINE L2 -81 3232 2785 586 298 73 15 chr3 36891158 36891363 -190633215 - MIR SINE MIR -37 225 9 229 385 78 8 chr3 36892584 36892707 -190631871 + MIR3 SINE MIR 14 145 -103 296 341 0 0 chr3 36893375 36893460 -190631118 - L2 LINE L2 0 3313 3229 2530 61 0 3 chr3 36893597 36893908 -190630670 - AluY SINE Alu -1 310 1 215 277 96 43 chr3 36894052 36894146 -190630432 + MIR3 SINE MIR 101 199 -9 355 321 75 27 chr3 36894239 36894426 -190630152 + MER117 DNA MER1_type 2 197 0 321 358 15 22 chr3 36894734 36894871 -190629707 + L2 LINE L2 3134 3269 -3 21 0 0 0 chr3 36896734 36896755 -190627823 + AT_rich Low_complexity Low_complexity 1 21 0 378 333 48 0 chr3 36897320 36897488 -190627090 - MIR SINE MIR -3 259 84 360 88 18 0 chr3 36899832 36899889 -190624689 + THE1B-int LTR MaLR 1523 1580 0 2297 109 22 30 chr3 36899889 36900256 -190624322 + THE1B LTR MaLR 1 364 0 634 289 83 8 chr3 36900645 36900887 -190623691 - MIR SINE MIR 0 262 3 355 264 132 18 chr3 36901069 36901236 -190623342 - MLT1J LTR MaLR -317 194 9 794 232 95 93 chr3 36902010 36902520 -190622058 - L2 LINE L2 -72 3241 2733 4267 324 43 18 chr3 36902729 36905406 -190619172 - ERVL LTR ERVL -358 5406 2625 1206 313 110 20 chr3 36905418 36906025 -190618553 - L2 LINE L2 -1078 2236 1575 429 20 0 0 chr3 36906198 36906248 -190618330 + (CA)n Simple_repeat Simple_repeat 2 51 0 1065 211 36 36 chr3 36906653 36906876 -190617702 - MER58A DNA MER1_type -1 223 1 2150 118 3 0 chr3 36907114 36907411 -190617167 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr3 36907500 36907539 -190617039 + AT_rich Low_complexity Low_complexity 1 39 0 384 389 83 15 chr3 36907851 36908175 -190616403 + MLT1K LTR MaLR 82 427 -161 3588 52 4 4 chr3 36908629 36909093 -190615485 - L1PA8 LINE L1 0 6172 5709 302 288 54 9 chr3 36909196 36909307 -190615271 - MIR SINE MIR -30 232 117 192 200 0 0 chr3 36909321 36909351 -190615227 + MIR SINE MIR 116 145 -63 736 302 35 16 chr3 36909717 36909972 -190614606 + MIR SINE MIR 2 261 -1 463 259 97 21 chr3 36911524 36912405 -190612173 - HAL1 LINE L1 -100 2407 1278 216 330 55 0 chr3 36912413 36912504 -190612074 - L2 LINE L2 -503 2811 2716 775 298 123 11 chr3 36912609 36913136 -190611442 - L1MC4a LINE L1 -1642 6166 5581 2395 94 0 3 chr3 36913141 36913450 -190611128 - AluSq SINE Alu -5 308 1 324 285 24 32 chr3 36913470 36913593 -190610985 + MIR SINE MIR 4 125 -137 626 305 64 84 chr3 36913747 36914294 -190610284 - L2 LINE L2 -1615 1699 1164 244 210 62 49 chr3 36914501 36914582 -190609996 + MIR SINE MIR 171 252 -10 181 171 114 0 chr3 36914552 36914587 -190609991 + L2 LINE L2 3268 3306 -7 * 288 284 0 0 chr3 36915609 36915676 -190608902 + L2 LINE L2 3247 3313 0 21 82 0 0 chr3 36916795 36916844 -190607734 + AT_rich Low_complexity Low_complexity 1 49 0 2041 245 103 21 chr3 36917116 36917745 -190606833 - L1ME1 LINE L1 -2 6164 5484 306 50 0 0 chr3 36917752 36917792 -190606786 + (TC)n Simple_repeat Simple_repeat 1 40 0 1125 183 68 0 chr3 36917822 36918013 -190606565 - AluJo SINE Alu -108 204 1 437 162 33 0 chr3 36918014 36918168 -190606410 + CT-rich Low_complexity Low_complexity 1 159 0 2433 236 61 40 chr3 36918202 36918502 -190606076 - L1ME1 LINE L1 -706 5460 5168 2142 137 0 0 chr3 36918502 36918808 -190605770 - AluSx SINE Alu -6 306 1 2433 236 61 40 chr3 36918808 36919484 -190605094 - L1ME1 LINE L1 -998 5168 4463 322 312 71 0 chr3 36919786 36919910 -190604668 - MIR SINE MIR -56 152 18 200 94 0 31 chr3 36920006 36920038 -190604540 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chr3 36920329 36920358 -190604220 + AT_rich Low_complexity Low_complexity 1 29 0 2394 251 38 56 chr3 36920605 36920710 -190603868 - L2 LINE L2 -48 3265 3160 2117 110 0 0 chr3 36920710 36921029 -190603549 + AluSg SINE Alu 1 319 0 1551 186 7 26 chr3 36921035 36921342 -190603236 + AluJb SINE Alu 1 301 -11 2394 251 38 56 chr3 36921342 36922234 -190602344 - L2 LINE L2 -158 3155 2274 328 312 14 64 chr3 36922191 36922332 -190602246 + MIR SINE MIR 8 141 -121 * 392 231 0 100 chr3 36922547 36922611 -190601967 - L2 LINE L2 -1035 2279 2233 2032 104 49 3 chr3 36922611 36922899 -190601679 - AluSg SINE Alu -7 303 3 392 231 0 100 chr3 36922899 36922964 -190601614 - L2 LINE L2 -1081 2233 2163 2067 112 6 19 chr3 36923045 36923386 -190601192 - AluY SINE Alu 0 311 1 286 247 80 87 chr3 36924324 36924543 -190600035 - MIR SINE MIR -34 228 7 234 267 50 40 chr3 36924895 36924996 -190599582 + L1MC4 LINE L1 6605 6706 -1336 26 98 0 0 chr3 36925072 36925154 -190599424 + AT_rich Low_complexity Low_complexity 1 82 0 226 23 45 114 chr3 36925154 36925242 -190599336 + (TTAA)n Simple_repeat Simple_repeat 2 83 0 379 206 54 11 chr3 36925275 36925367 -190599211 - L1ME3 LINE L1 -66 6096 6001 405 254 0 18 chr3 36925428 36925542 -190599036 - L1ME3 LINE L1 -450 5712 5601 453 302 45 45 chr3 36925552 36925797 -190598781 + L3b LINE CR1 1117 1361 -222 670 315 65 0 chr3 36926198 36926430 -190598148 + L1ME LINE L1 7 253 -5817 266 253 60 12 chr3 36926766 36926849 -190597729 - MER91C DNA MER1_type -30 110 24 373 326 126 7 chr3 36926872 36927007 -190597571 - MER91A DNA MER1_type -45 151 1 1446 254 129 24 chr3 36927477 36928015 -190596563 - MLT1E2 LTR MaLR 0 505 1 2771 164 182 39 chr3 36928326 36929045 -190595533 - LTR1B LTR ERV1 -4 822 1 375 274 18 35 chr3 36929046 36929159 -190595419 - L2 LINE L2 -15 3298 3188 492 144 4 1 chr3 36930861 36931090 -190593488 + AluSc SINE Alu 36 297 -12 198 346 25 12 chr3 36931092 36931173 -190593405 - MIR SINE MIR -86 122 41 28 0 0 0 chr3 36931545 36931573 -190593005 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 36933301 36933325 -190591253 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1298 226 76 100 chr3 36933327 36933804 -190590774 + L1MC4 LINE L1 7345 7801 -241 2391 93 0 3 chr3 36933804 36934116 -190590462 + AluY SINE Alu 1 311 0 1298 226 76 100 chr3 36934116 36934351 -190590227 + L1MC4 LINE L1 7801 8040 -2 667 291 147 39 chr3 36934476 36935275 -190589303 + L2 LINE L2 2424 3312 -1 631 266 89 30 chr3 36935293 36935687 -190588891 - LTR33A LTR ERVL -4 519 66 2217 176 31 10 chr3 36936466 36936881 -190587697 + MSTB LTR MaLR 1 424 -2 192 316 11 32 chr3 36937877 36937972 -190586606 - MIR SINE MIR -38 224 132 2386 82 0 7 chr3 36938260 36938564 -190586014 + AluSp SINE Alu 1 302 -11 387 348 27 11 chr3 36938650 36938837 -190585741 - MIR3 SINE MIR 0 208 19 24 53 0 0 chr3 36938939 36938977 -190585601 + AT_rich Low_complexity Low_complexity 1 38 0 2090 119 0 45 chr3 36939037 36939349 -190585229 - AluSx SINE Alu -14 298 1 1591 127 92 50 chr3 36939759 36940042 -190584536 + AluSx SINE Alu 1 295 -17 489 76 0 0 chr3 36940045 36940111 -190584467 + (CA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr3 36941694 36941731 -190582847 + AT_rich Low_complexity Low_complexity 1 37 0 419 315 34 0 chr3 36942351 36942500 -190582078 - MIR SINE MIR -35 227 74 474 240 50 75 chr3 36942798 36942998 -190581580 - LTR16A1 LTR ERVL 0 457 263 26 0 0 0 chr3 36943269 36943295 -190581283 + AT_rich Low_complexity Low_complexity 1 26 0 1989 131 0 0 chr3 36943295 36943569 -190581009 - AluSx SINE Alu -36 276 3 183 42 0 0 chr3 36944571 36944595 -190579983 + (CTTA)n Simple_repeat Simple_repeat 1 24 0 375 353 65 56 chr3 36945022 36945359 -190579219 + L2 LINE L2 2836 3175 -97 1067 217 65 70 chr3 36945493 36945848 -190578730 - LTR16A1 LTR ERVL -6 451 99 423 161 0 12 chr3 36945932 36946013 -190578565 + MADE1 DNA Mariner 1 80 0 326 200 0 0 chr3 36946036 36946096 -190578482 - MIR SINE MIR -12 250 191 289 265 24 112 chr3 36946228 36946398 -190578180 - MER104 DNA Tc2 -4 176 22 975 254 89 106 chr3 36948179 36948978 -190575600 - L2 LINE L2 -4 3309 2516 1903 171 3 20 chr3 36949059 36949409 -190575169 - MER2 DNA MER2_type 0 344 1 1104 307 83 7 chr3 36950680 36951136 -190573442 - L2 LINE L2 -5 3308 2818 866 193 0 6 chr3 36951239 36951400 -190573178 - L1PB4 LINE L1 -7 6149 5990 666 289 62 19 chr3 36951689 36952009 -190572569 + MLT1L LTR MaLR 74 327 -184 204 267 300 0 chr3 36954121 36954211 -190570367 - L2 LINE L2 -19 3294 3178 363 44 0 0 chr3 36954331 36954376 -190570202 + (CA)n Simple_repeat Simple_repeat 2 46 0 879 123 8 0 chr3 36956267 36956389 -190568189 + FLAM_C SINE Alu 1 123 -20 372 22 0 0 chr3 36956392 36956437 -190568141 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 532 151 0 0 chr3 36957837 36957930 -190566648 + L1MA1 LINE L1 6066 6158 -144 320 74 56 0 chr3 36957930 36957982 -190566596 + L1MA3 LINE L1 6249 6305 0 609 250 155 14 chr3 36958078 36958362 -190566216 - MER5C DNA MER1_type 0 324 1 637 163 35 99 chr3 36958787 36958989 -190565589 + MER53 DNA DNA 1 189 0 1854 193 100 0 chr3 36959488 36959877 -190564701 - MSTA LTR MaLR 0 428 1 337 221 202 38 chr3 36960265 36960582 -190563996 - L1ME4a LINE L1 -25 6096 5728 1756 218 19 36 chr3 36960769 36961182 -190563396 - MLT2D LTR ERVL -8 406 1 292 287 52 22 chr3 36961421 36961557 -190563021 + MIR SINE MIR 65 204 -58 1743 210 8 24 chr3 36961613 36961984 -190562594 - MLT1A1 LTR MaLR 0 365 1 1216 177 32 8 chr3 36962283 36962531 -190562047 + Tigger7 DNA MER2_type 2237 2490 -1 363 322 81 0 chr3 36962533 36962707 -190561871 - L2 LINE L2 0 3313 3126 324 277 98 18 chr3 36962901 36963013 -190561565 - MLT1I LTR MaLR -218 191 71 298 287 0 8 chr3 36963186 36963308 -190561270 - MER113 DNA MER1_type? -394 127 7 22 0 0 0 chr3 36963706 36963728 -190560850 + AT_rich Low_complexity Low_complexity 1 22 0 2225 113 0 0 chr3 36963948 36964239 -190560339 - AluSp SINE Alu -22 291 1 2080 141 0 0 chr3 36964462 36964761 -190559817 + AluSx SINE Alu 3 301 -11 406 321 70 21 chr3 36965597 36965784 -190558794 + L2 LINE L2 2782 2977 -337 221 258 287 18 chr3 36965797 36965964 -190558614 - MIR SINE MIR -12 250 39 408 337 68 40 chr3 36966065 36966317 -190558261 + L2 LINE L2 3031 3289 -24 491 307 177 36 chr3 36966373 36966885 -190557693 - L2 LINE L2 -5 3308 2736 184 219 0 0 chr3 36966947 36966979 -190557599 - MIR SINE MIR -114 148 117 180 0 0 0 chr3 36967730 36967750 -190556828 + (T)n Simple_repeat Simple_repeat 1 20 0 226 250 19 0 chr3 36968019 36968071 -190556507 + CT-rich Low_complexity Low_complexity 2 54 0 552 213 0 0 chr3 36968481 36968603 -190555975 + T-rich Low_complexity Low_complexity 1 122 0 211 139 23 0 chr3 36968844 36968887 -190555691 + T-rich Low_complexity Low_complexity 2 45 0 222 37 0 0 chr3 36972223 36972250 -190552328 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 36975181 36975210 -190549368 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 36975407 36975429 -190549149 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 36979845 36979870 -190544708 + AT_rich Low_complexity Low_complexity 1 25 0 214 317 0 0 chr3 36981342 36981424 -190543154 + T-rich Low_complexity Low_complexity 1 82 0 747 120 0 0 chr3 36982772 36982889 -190541689 + (TA)n Simple_repeat Simple_repeat 1 117 0 206 274 121 81 chr3 36986376 36986500 -190538078 - L2 LINE L2 -6 3266 3138 21 36 0 0 chr3 36987071 36987099 -190537479 + AT_rich Low_complexity Low_complexity 1 28 0 1201 180 0 9 chr3 36987126 36987337 -190537241 - MER2 DNA MER2_type -136 209 1 741 283 115 49 chr3 36987466 36988103 -190536475 + L1ME4a LINE L1 5282 5960 -161 215 379 79 11 chr3 36988548 36988738 -190535840 - L2 LINE L2 -946 2368 2166 223 186 34 17 chr3 36989113 36989172 -190535406 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 614 293 30 0 chr3 36989226 36989393 -190535185 - MER5A DNA MER1_type 0 189 18 22 0 0 0 chr3 36989497 36989519 -190535059 + AT_rich Low_complexity Low_complexity 1 22 0 1760 172 7 10 chr3 36989520 36989810 -190534768 - AluJo SINE Alu -23 289 1 21 0 0 0 chr3 36989889 36989910 -190534668 + AT_rich Low_complexity Low_complexity 1 21 0 229 307 13 27 chr3 36990676 36990751 -190533827 - MIR3 SINE MIR -7 201 128 2404 107 6 8 chr3 36991264 36991618 -190532960 - THE1A LTR MaLR -2 353 1 851 287 106 51 chr3 36992485 36992959 -190531619 + L2 LINE L2 2812 3311 -2 204 40 0 0 chr3 36993948 36993973 -190530605 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 26 64 0 0 chr3 36995375 36995422 -190529156 + AT_rich Low_complexity Low_complexity 1 47 0 261 241 0 0 chr3 36995788 36995842 -190528736 - L2 LINE L2 -5 3267 3214 248 309 0 0 chr3 36995883 36995938 -190528640 + L2 LINE L2 3198 3252 -20 213 65 0 0 chr3 36996235 36996266 -190528312 + (A)n Simple_repeat Simple_repeat 1 31 0 260 354 96 51 chr3 36996338 36996807 -190527771 - L2 LINE L2 -505 2809 2320 26 30 0 0 chr3 36996859 36996892 -190527686 + AT_rich Low_complexity Low_complexity 1 33 0 228 246 14 43 chr3 36996940 36997009 -190527569 - MIR SINE MIR -61 201 135 271 322 126 45 chr3 36997059 36997807 -190526771 - L2 LINE L2 -1150 2164 1357 216 167 0 0 chr3 36998413 36998449 -190526129 + (CAAAG)n Simple_repeat Simple_repeat 2 37 0 312 250 11 0 chr3 36999575 36999663 -190524915 - MER103 DNA DNA -71 95 7 419 299 11 17 chr3 37000039 37000216 -190524362 + CT-rich Low_complexity Low_complexity 1 176 0 263 231 222 9 chr3 37001872 37001980 -190522598 - MIR SINE MIR -104 158 28 192 261 15 62 chr3 37053123 37053188 -190471390 - L2 LINE L2 -2 3311 3250 707 307 12 16 chr3 37053687 37053938 -190470640 - MIR SINE MIR 0 262 13 2635 50 0 0 chr3 37054525 37054827 -190469751 + AluY SINE Alu 1 302 -9 296 140 20 0 chr3 37054905 37054955 -190469623 + MIR SINE MIR 91 141 -121 388 229 119 17 chr3 37055512 37055630 -190468948 - MIR3 SINE MIR -5 203 74 237 125 0 0 chr3 37056061 37056093 -190468485 - MLT1G1 LTR MaLR -319 276 245 234 302 112 26 chr3 37059365 37059481 -190465097 - L2 LINE L2 -225 3047 2922 2076 104 11 4 chr3 37059623 37059903 -190464675 + AluSq SINE Alu 1 282 -31 489 17 0 0 chr3 37059903 37059961 -190464617 + (CATA)n Simple_repeat Simple_repeat 1 58 0 464 268 33 58 chr3 37062791 37062965 -190461613 + MER69A DNA AcHobo 6 176 -1 1192 279 147 14 chr3 37062968 37063391 -190461187 + MER69 DNA AcHobo 89 567 -659 1284 222 84 23 chr3 37063442 37063870 -190460708 + MER69 DNA AcHobo 2073 2526 0 305 284 12 0 chr3 37066976 37067057 -190457521 - MER63 DNA MER1_type -2 1060 979 264 30 0 0 chr3 37067090 37067123 -190457455 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2375 79 0 28 chr3 37067356 37067674 -190456904 + AluY SINE Alu 1 309 -2 453 288 187 14 chr3 37068520 37068739 -190455839 - MIR SINE MIR 0 262 6 30 45 0 0 chr3 37069107 37069151 -190455427 + AT_rich Low_complexity Low_complexity 1 44 0 872 223 9 28 chr3 37070155 37070366 -190454212 + MER3 DNA MER1_type 2 208 -1 728 309 18 9 chr3 37070400 37070617 -190453961 + MIR SINE MIR 41 259 -3 464 250 17 0 chr3 37070782 37070898 -190453680 - MER94 DNA DNA -1 133 16 1702 110 9 100 chr3 37071595 37071914 -190452664 + AluSq SINE Alu 1 290 -23 1374 120 0 29 chr3 37071987 37072196 -190452382 + AluSg/x SINE Alu 105 307 -5 393 261 232 19 chr3 37073376 37073587 -190450991 - MIR SINE MIR -6 256 1 1081 179 5 33 chr3 37074724 37074936 -190449642 + MER20 DNA MER1_type 2 207 -12 654 218 158 0 chr3 37075629 37075794 -190448784 + MIR SINE MIR 24 214 -48 279 0 0 0 chr3 37076467 37076498 -190448080 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2247 112 7 0 chr3 37077819 37078124 -190446454 - AluSc SINE Alu -2 307 1 1872 172 0 13 chr3 37078245 37078559 -190446019 - AluJb SINE Alu 0 312 3 316 347 75 19 chr3 37079100 37079367 -190445211 - L2 LINE L2 -15 3298 2964 503 315 61 20 chr3 37080026 37080223 -190444355 - MIR SINE MIR -16 246 42 894 188 32 28 chr3 37080401 37080619 -190443959 + MER20 DNA MER1_type 1 219 0 222 118 0 0 chr3 37081329 37081363 -190443215 + (CAG)n Simple_repeat Simple_repeat 1 34 0 2151 51 3 111 chr3 37082190 37082522 -190442056 + AluY SINE Alu 1 296 -15 24 0 0 0 chr3 37082945 37082969 -190441609 + AT_rich Low_complexity Low_complexity 1 24 0 491 241 52 0 chr3 37083268 37083384 -190441194 - MER5A DNA MER1_type -31 158 37 301 280 10 10 chr3 37083505 37083605 -190440973 + MIR3 SINE MIR 82 181 -27 523 218 29 45 chr3 37083608 37083788 -190440790 - MER63A DNA MER1_type 0 210 32 320 414 6 6 chr3 37084206 37084368 -190440210 + MIR3 SINE MIR 32 193 -15 306 0 0 0 chr3 37084562 37084596 -190439982 + (TC)n Simple_repeat Simple_repeat 1 34 0 342 340 61 30 chr3 37085478 37085852 -190438726 - L2 LINE L2 -247 3066 2682 1262 40 0 0 chr3 37086143 37086293 -190438285 - L1PA3 LINE L1 -2 6153 6004 415 295 184 0 chr3 37087920 37088127 -190436451 - MIR SINE MIR -5 257 13 537 256 75 19 chr3 37088168 37088328 -190436250 - MER5B DNA MER1_type -4 174 6 190 294 20 0 chr3 37089829 37089880 -190434698 - L2 LINE L2 0 3272 3221 950 286 37 80 chr3 37090194 37090705 -190433873 - L2 LINE L2 -640 2674 2186 625 311 44 13 chr3 37090720 37090945 -190433633 - MIR SINE MIR -27 235 4 668 286 73 36 chr3 37090947 37091276 -190433302 - L2 LINE L2 -1135 2179 1839 216 0 0 0 chr3 37091322 37091346 -190433232 + (T)n Simple_repeat Simple_repeat 1 24 0 223 239 33 33 chr3 37091406 37091498 -190433080 + (TCTCTG)n Simple_repeat Simple_repeat 4 95 0 482 225 28 14 chr3 37092443 37092585 -190431993 - L1ME2 LINE L1 -1 6333 6022 217 267 81 29 chr3 37092675 37092811 -190431767 + MIR SINE MIR 23 262 0 2208 108 7 0 chr3 37093440 37093746 -190430832 - AluSq SINE Alu -5 308 1 216 388 0 0 chr3 37093959 37094044 -190430534 + MIR SINE MIR 18 102 -160 461 247 10 0 chr3 37094910 37095007 -190429571 - MER81 DNA DNA 0 114 17 343 242 51 101 chr3 37095014 37095192 -190429386 - MIR SINE MIR -57 205 37 240 324 20 20 chr3 37096516 37096618 -190427960 + MIR SINE MIR 31 132 -76 344 71 18 0 chr3 37097149 37097205 -190427373 + (CA)n Simple_repeat Simple_repeat 2 58 0 275 338 48 35 chr3 37097208 37097353 -190427225 + L2 LINE L2 3123 3269 -3 2879 192 11 73 chr3 37101645 37102339 -190422239 + MER82 DNA MER2_type 2 652 -1 26 30 0 0 chr3 37102431 37102464 -190422114 + AT_rich Low_complexity Low_complexity 1 33 0 424 356 42 93 chr3 37103380 37103696 -190420882 + L2 LINE L2 2437 2767 -505 1914 152 3 0 chr3 37103696 37103986 -190420592 + AluSx SINE Alu 1 291 -21 424 356 42 93 chr3 37103986 37104500 -190420078 + L2 LINE L2 2767 3237 -35 1153 216 107 28 chr3 37104644 37104963 -190419615 + MER2 DNA MER2_type 2 345 0 197 339 89 16 chr3 37105822 37105946 -190418632 - L2 LINE L2 -1 3271 3139 440 327 216 7 chr3 37106112 37106418 -190418160 - L3 LINE CR1 -4 1573 1204 595 203 86 63 chr3 37106486 37106708 -190417870 - MER112 DNA MER1_type -6 254 28 318 274 95 0 chr3 37106741 37106836 -190417742 - MER5A DNA MER1_type -85 104 1 236 210 25 12 chr3 37106933 37107014 -190417564 - Charlie7 DNA MER1_type -2474 138 57 287 198 33 66 chr3 37107947 37108004 -190416574 + MIR SINE MIR 67 121 -141 2231 77 3 68 chr3 37108004 37108330 -190416248 - AluY SINE Alu -6 305 1 287 198 33 66 chr3 37108330 37108363 -190416215 + MIR SINE MIR 121 154 -108 22 35 0 0 chr3 37111652 37111681 -190412897 + AT_rich Low_complexity Low_complexity 1 29 0 497 226 28 0 chr3 37113754 37113860 -190410718 - MER5A DNA MER1_type -77 112 4 365 340 11 54 chr3 37115570 37115849 -190408729 + L1ME3A LINE L1 5618 5884 -286 27 49 0 0 chr3 37116111 37116152 -190408426 + AT_rich Low_complexity Low_complexity 1 41 0 284 206 56 0 chr3 37116159 37116266 -190408312 + (TA)n Simple_repeat Simple_repeat 2 114 0 265 222 43 31 chr3 37116206 37116368 -190408210 + (TATAA)n Simple_repeat Simple_repeat 2 165 0 * 1174 208 4 17 chr3 37117122 37117353 -190407225 + AluJo SINE Alu 2 229 -83 585 217 59 13 chr3 37118705 37118857 -190405721 - L1ME3A LINE L1 -8 6162 6004 1885 122 7 11 chr3 37118858 37119129 -190405449 - AluSx SINE Alu -12 300 31 4521 123 106 91 chr3 37119132 37120723 -190403855 - pTR5 LTR ERV1 0 2438 750 229 150 125 0 chr3 37120723 37120763 -190403815 - AluSx SINE Alu -256 46 2 940 229 146 3 chr3 37120765 37121053 -190403525 - L1ME3A LINE L1 -159 6011 5683 2049 151 0 3 chr3 37121901 37122213 -190402365 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 37123406 37123430 -190401148 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr3 37124117 37124147 -190400431 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 224 98 0 24 chr3 37124197 37124238 -190400340 + (CAATA)n Simple_repeat Simple_repeat 3 42 0 1959 160 0 10 chr3 37124418 37124731 -190399847 - AluJb SINE Alu -1 311 2 2024 190 6 3 chr3 37124875 37125239 -190399339 - MLT1A1 LTR MaLR 0 365 1 260 346 109 19 chr3 37125725 37125936 -190398642 + MIR SINE MIR 20 249 -13 257 119 30 30 chr3 37125939 37126006 -190398572 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 27 0 0 0 chr3 37126184 37126211 -190398367 + AT_rich Low_complexity Low_complexity 1 27 0 380 361 87 0 chr3 37126403 37126611 -190397967 + Charlie8 DNA MER1_type 40 265 -2152 261 339 32 26 chr3 37126671 37126860 -190397718 - L2 LINE L2 -940 2374 2185 404 229 57 10 chr3 37126868 37127008 -190397570 + MER5A DNA MER1_type 1 188 -1 877 278 8 4 chr3 37127649 37127883 -190396695 + MIR SINE MIR 21 255 -7 371 373 93 10 chr3 37128555 37128748 -190395830 - MIR SINE MIR -34 228 20 2377 97 0 0 chr3 37129360 37129668 -190394910 - AluSg SINE Alu -2 308 1 1893 46 8 17 chr3 37129758 37129999 -190394579 + AluY SINE Alu 73 311 0 726 219 62 6 chr3 37130081 37130259 -190394319 + MER5A DNA MER1_type 1 188 -1 1908 173 68 0 chr3 37130900 37131265 -190393313 - MLT1B LTR MaLR 0 390 1 344 248 74 8 chr3 37134274 37134395 -190390183 - MIR SINE MIR 0 262 134 31 76 0 0 chr3 37134402 37134468 -190390110 + AT_rich Low_complexity Low_complexity 1 66 0 198 400 0 0 chr3 37134525 37134595 -190389983 - MIR SINE MIR -191 71 2 347 256 23 47 chr3 37134668 37134797 -190389781 - MIR SINE MIR -116 146 21 2350 99 0 0 chr3 37136426 37136728 -190387850 + AluSg SINE Alu 2 303 -7 63 0 0 0 chr3 37136792 37136855 -190387723 + AT_rich Low_complexity Low_complexity 1 63 0 257 258 67 11 chr3 37138012 37138101 -190386477 + Charlie7 DNA MER1_type 8 101 -2511 267 258 0 15 chr3 37138243 37138309 -190386269 + GA-rich Low_complexity Low_complexity 2 66 0 2435 74 0 0 chr3 37138374 37138672 -190385906 + AluY SINE Alu 1 298 -13 914 273 98 43 chr3 37139039 37139457 -190385121 - L2 LINE L2 -2514 800 360 551 234 94 57 chr3 37139961 37140153 -190384425 + MIR SINE MIR 14 212 -50 21 0 0 0 chr3 37140241 37140262 -190384316 + AT_rich Low_complexity Low_complexity 1 21 0 2124 105 23 13 chr3 37142072 37142378 -190382200 - AluSx SINE Alu -1 311 3 255 103 0 0 chr3 37142858 37142897 -190381681 + (A)n Simple_repeat Simple_repeat 1 39 0 2029 117 45 0 chr3 37143678 37143968 -190380610 - AluY SINE Alu -8 303 1 2494 83 0 0 chr3 37144646 37144958 -190379620 - AluSx SINE Alu 0 312 1 234 232 18 0 chr3 37145280 37145336 -190379242 + MIR SINE MIR 90 146 -62 198 0 0 0 chr3 37146047 37146069 -190378509 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 226 155 28 0 chr3 37147076 37147140 -190377438 + (TA)n Simple_repeat Simple_repeat 2 70 -4 2019 148 45 0 chr3 37147140 37147472 -190377106 + MER7A DNA MER2_type 2 346 0 226 155 28 0 chr3 37147472 37147478 -190377100 + (TA)n Simple_repeat Simple_repeat 70 74 0 225 0 0 0 chr3 37147502 37147527 -190377051 + (TG)n Simple_repeat Simple_repeat 2 26 0 276 268 14 0 chr3 37148790 37148861 -190375717 + Charlie8 DNA MER1_type 2341 2412 -5 204 304 29 0 chr3 37148909 37148978 -190375600 - MIR SINE MIR -106 156 86 33 43 0 0 chr3 37151113 37151160 -190373418 + AT_rich Low_complexity Low_complexity 1 47 0 10562 174 30 11 chr3 37151168 37152171 -190372407 - L1M2 LINE L1 -549 5742 4760 213 65 0 0 chr3 37152171 37152202 -190372376 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 10562 174 30 11 chr3 37152202 37153830 -190370748 - L1M2 LINE L1 -1531 4760 3057 232 305 188 8 chr3 37154251 37154379 -190370199 + L2 LINE L2 3117 3267 -5 22 0 0 0 chr3 37154395 37154417 -190370161 + AT_rich Low_complexity Low_complexity 1 22 0 6728 68 17 0 chr3 37154865 37155782 -190368796 - L1PA7 LINE L1 0 6154 5226 228 337 105 0 chr3 37155797 37155883 -190368695 + MER91C DNA MER1_type 46 140 0 396 344 160 5 chr3 37156005 37156217 -190368361 - MIR SINE MIR 0 262 18 186 294 98 33 chr3 37156497 37156589 -190367989 + L2 LINE L2 3174 3271 -1 1197 155 33 69 chr3 37157168 37157413 -190367165 - MER46A DNA MER2_type 0 236 1 2027 132 7 3 chr3 37157673 37157976 -190366602 + AluSg SINE Alu 1 304 -6 231 271 0 17 chr3 37160670 37160729 -190363849 + L2 LINE L2 3188 3245 -27 316 139 0 28 chr3 37161284 37161356 -190363222 + (TA)n Simple_repeat Simple_repeat 2 71 0 230 183 0 17 chr3 37161364 37161424 -190363154 - L1MCa LINE L1 -4362 2064 2006 190 137 0 39 chr3 37161432 37161483 -190363095 + (TA)n Simple_repeat Simple_repeat 2 50 0 521 295 128 13 chr3 37161506 37161740 -190362838 - MIR SINE MIR 0 262 2 192 411 6 25 chr3 37161793 37161956 -190362622 - L2 LINE L2 -209 3063 2904 232 374 64 28 chr3 37162646 37163004 -190361574 - L2 LINE L2 -692 2622 2252 574 176 50 0 chr3 37163106 37163225 -190361353 - AluJb SINE Alu 0 312 188 617 193 0 0 chr3 37163265 37163374 -190361204 - FLAM_C SINE Alu -34 109 1 1669 183 7 7 chr3 37163587 37163888 -190360690 + AluJb SINE Alu 1 301 -11 333 0 0 0 chr3 37163928 37163965 -190360613 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 86 0 3 chr3 37163976 37164279 -190360299 - AluY SINE Alu -9 302 1 212 294 0 44 chr3 37164761 37164829 -190359749 - L2 LINE L2 0 3272 3208 239 253 132 0 chr3 37165775 37165866 -190358712 + L1ME LINE L1 5547 5649 -472 796 134 37 43 chr3 37166555 37166742 -190357836 - MER53 DNA DNA -2 187 2 1219 197 58 7 chr3 37166792 37167087 -190357491 + MER33 DNA MER1_type 15 324 0 527 203 98 130 chr3 37167575 37167891 -190356687 + L2 LINE L2 2946 3251 -62 234 317 48 10 chr3 37168078 37168182 -190356396 - L2 LINE L2 -22 3291 3184 717 283 85 0 chr3 37168302 37168525 -190356053 - MIR SINE MIR -16 246 5 684 283 102 76 chr3 37168703 37168847 -190355731 - LTR33A LTR ERVL -6 517 378 2163 116 0 3 chr3 37168847 37169150 -190355428 - AluSx SINE Alu -10 302 1 684 283 102 76 chr3 37169150 37169468 -190355110 - LTR33A LTR ERVL -145 378 43 739 280 62 4 chr3 37169632 37169857 -190354721 - MIR SINE MIR -23 239 2 227 209 58 81 chr3 37169871 37169957 -190354621 + L2 LINE L2 3184 3267 -5 1616 189 0 26 chr3 37170381 37170694 -190353884 - AluJo SINE Alu -7 305 1 2091 119 0 49 chr3 37171072 37171400 -190353178 - AluSx SINE Alu 0 312 1 1300 197 33 33 chr3 37171428 37171727 -190352851 + AluJo SINE Alu 1 299 -13 21 36 0 0 chr3 37171923 37171951 -190352627 + AT_rich Low_complexity Low_complexity 1 28 0 386 260 175 19 chr3 37172739 37172893 -190351685 + MER5A DNA MER1_type 9 186 -3 2713 35 0 3 chr3 37172895 37173207 -190351371 + AluY SINE Alu 1 311 0 307 246 169 8 chr3 37173343 37173473 -190351105 - L3 LINE CR1 -214 1363 1213 223 259 12 25 chr3 37173477 37173558 -190351020 + CT-rich Low_complexity Low_complexity 2 81 0 261 0 0 0 chr3 37173838 37173867 -190350711 + (A)n Simple_repeat Simple_repeat 1 29 0 1135 36 0 0 chr3 37174383 37174520 -190350058 - L1PA5 LINE L1 -83 6071 5935 470 48 0 0 chr3 37174521 37174584 -190349994 + L1PA6 LINE L1 6090 6152 -2 23 0 0 0 chr3 37174584 37174607 -190349971 + AT_rich Low_complexity Low_complexity 1 23 0 2214 125 0 0 chr3 37174765 37175069 -190349509 - AluSx SINE Alu -8 304 1 2067 114 0 34 chr3 37175398 37175695 -190348883 - AluSq SINE Alu -21 292 6 21 36 0 0 chr3 37176247 37176275 -190348303 + AT_rich Low_complexity Low_complexity 1 28 0 181 291 81 12 chr3 37176297 37176383 -190348195 + L3b LINE CR1 1300 1391 -192 2156 98 0 39 chr3 37177237 37177543 -190347035 + AluSg SINE Alu 2 295 -15 509 254 188 0 chr3 37177847 37177985 -190346593 + MER5A DNA MER1_type 20 183 -6 198 184 0 82 chr3 37178691 37178740 -190345838 + L2 LINE L2 3216 3260 -12 354 45 0 0 chr3 37178894 37178938 -190345640 + (TA)n Simple_repeat Simple_repeat 2 45 0 1030 180 23 46 chr3 37179174 37179391 -190345187 + AluJo SINE Alu 77 288 -24 1726 186 0 14 chr3 37179852 37180148 -190344430 + AluJo SINE Alu 1 292 -20 1919 138 0 7 chr3 37180151 37180453 -190344125 + AluSg SINE Alu 1 300 0 279 0 0 0 chr3 37182367 37182398 -190342180 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr3 37183761 37183783 -190340795 + AT_rich Low_complexity Low_complexity 1 22 0 2302 87 3 0 chr3 37184199 37184509 -190340069 + AluY SINE Alu 1 311 0 241 246 104 60 chr3 37185457 37185591 -190338987 + MIR SINE MIR 75 214 -48 250 365 70 40 chr3 37186515 37186715 -190337863 - L3b LINE CR1 -84 1499 1294 24 32 0 0 chr3 37186960 37186991 -190337587 + AT_rich Low_complexity Low_complexity 1 31 0 437 352 33 5 chr3 37187175 37187388 -190337190 - MIR SINE MIR -5 257 39 1446 303 83 37 chr3 37187820 37188834 -190335744 + L2 LINE L2 2200 3308 -5 2112 117 3 3 chr3 37189018 37189317 -190335261 - AluSx SINE Alu -13 299 1 2021 139 0 3 chr3 37190083 37190386 -190334192 + AluSx SINE Alu 1 302 -10 455 216 34 0 chr3 37191447 37191535 -190333043 - MER58A DNA MER1_type -15 92 2 604 343 29 27 chr3 37191544 37191920 -190332658 + L1MC4a LINE L1 5533 5909 -1899 405 0 0 0 chr3 37192765 37192810 -190331768 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 37192834 37192855 -190331723 + AT_rich Low_complexity Low_complexity 1 21 0 550 230 25 50 chr3 37192861 37193022 -190331556 - MIR SINE MIR -66 196 40 1406 197 47 0 chr3 37193644 37193898 -190330680 - AluJo SINE Alu -23 289 24 22 0 0 0 chr3 37194216 37194238 -190330340 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 37194320 37194348 -190330230 + AT_rich Low_complexity Low_complexity 1 28 0 1692 127 70 14 chr3 37194464 37194748 -190329830 - AluSx SINE Alu -6 306 7 1331 195 32 22 chr3 37194809 37195086 -190329492 + AluJo SINE Alu 3 282 -30 194 0 39 0 chr3 37195090 37195116 -190329462 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 26 82 0 0 chr3 37195148 37195209 -190329369 + AT_rich Low_complexity Low_complexity 1 61 0 207 0 0 0 chr3 37195716 37195739 -190328839 + (T)n Simple_repeat Simple_repeat 1 23 0 2185 122 0 0 chr3 37196054 37196349 -190328229 - AluSx SINE Alu -10 302 8 759 113 50 35 chr3 37196970 37197111 -190327467 - MER53 DNA DNA 0 189 47 258 214 43 51 chr3 37197166 37197283 -190327295 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 469 207 33 0 chr3 37197300 37197421 -190327157 - MER53 DNA DNA -57 132 8 494 223 61 14 chr3 37197450 37197598 -190326980 - MLT1J2 LTR MaLR -229 221 67 462 270 50 25 chr3 37199591 37199750 -190324828 + MIR SINE MIR 52 214 -48 811 256 83 45 chr3 37199906 37200219 -190324359 - LTR16A LTR ERVL -6 444 120 264 313 47 0 chr3 37200839 37200989 -190323589 - L1ME LINE L1 -240 5881 5725 205 340 20 65 chr3 37201218 37201371 -190323207 - L2 LINE L2 -184 3088 2943 245 174 0 0 chr3 37201792 37201838 -190322740 - L2 LINE L2 0 3313 3268 2490 66 0 0 chr3 37202978 37203280 -190321298 + AluY SINE Alu 1 302 -9 466 346 47 45 chr3 37203389 37203791 -190320787 + LTR16C LTR ERVL 74 476 -15 288 286 100 0 chr3 37205232 37205302 -190319276 - L2 LINE L2 -1 3312 3236 282 288 159 0 chr3 37205384 37205516 -190319062 + MER5A DNA MER1_type 35 187 -2 * 623 218 32 0 chr3 37205408 37205532 -190319046 - MER5A DNA MER1_type -61 128 1 232 237 178 15 chr3 37205754 37205889 -190318689 + L1ME4a LINE L1 5965 6121 0 1167 92 0 0 chr3 37206045 37206197 -190318381 + AluSg/x SINE Alu 159 310 0 242 71 0 24 chr3 37206388 37206430 -190318148 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 37206907 37206928 -190317650 + AT_rich Low_complexity Low_complexity 1 21 0 5525 106 30 35 chr3 37207396 37208081 -190316497 - L1PA13 LINE L1 -3 6160 5474 369 43 0 0 chr3 37208081 37208128 -190316450 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2228 97 0 0 chr3 37208128 37208407 -190316171 - AluSg SINE Alu -31 279 1 5525 106 30 35 chr3 37208407 37208648 -190315930 - L1PA13 LINE L1 -687 5476 5237 577 314 56 53 chr3 37208842 37209145 -190315433 - MER102b DNA MER1_type -31 310 7 204 260 0 0 chr3 37210049 37210099 -190314479 - L2 LINE L2 -1 3312 3263 223 293 0 0 chr3 37210252 37210310 -190314268 - L2 LINE L2 -4 3309 3252 1408 214 69 0 chr3 37210401 37210737 -190313841 + AluJo SINE Alu 3 358 0 2020 117 10 36 chr3 37210851 37211160 -190313418 + AluSq SINE Alu 1 301 -12 181 282 154 9 chr3 37211166 37211276 -190313302 + MIR SINE MIR 110 235 -27 25 31 0 0 chr3 37212589 37212621 -190311957 + AT_rich Low_complexity Low_complexity 1 32 0 247 340 39 31 chr3 37212726 37213021 -190311557 - L2 LINE L2 0 3313 2932 180 0 0 0 chr3 37213291 37213311 -190311267 + (A)n Simple_repeat Simple_repeat 1 20 0 720 260 92 24 chr3 37213318 37213568 -190311010 + L1ME1 LINE L1 5891 6157 -9 216 341 65 7 chr3 37215005 37215143 -190309435 + L3 LINE CR1 1232 1377 -200 308 349 125 31 chr3 37215172 37215364 -190309214 - MIR SINE MIR -39 223 14 363 367 25 13 chr3 37215395 37215553 -190309025 + L3 LINE CR1 1411 1570 -7 463 298 155 0 chr3 37215598 37215759 -190308819 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr3 37216706 37216728 -190307850 + AT_rich Low_complexity Low_complexity 1 22 0 19982 167 39 9 chr3 37216841 37219774 -190304804 - L1MA2 LINE L1 0 7723 4877 2027 141 13 0 chr3 37219774 37220073 -190304505 - AluSx SINE Alu -9 303 1 19982 167 39 9 chr3 37220073 37221485 -190303093 - L1MA2 LINE L1 -2846 4877 3508 315 0 0 0 chr3 37221485 37221520 -190303058 + (CA)n Simple_repeat Simple_repeat 2 36 0 19982 167 39 9 chr3 37221520 37224653 -190299925 - L1MA2 LINE L1 -4215 3508 23 2880 10 0 0 chr3 37225444 37225757 -190298821 - AluYb8 SINE Alu -5 313 1 275 0 29 0 chr3 37227332 37227367 -190297211 + (TAA)n Simple_repeat Simple_repeat 1 36 0 423 0 0 0 chr3 37228806 37228853 -190295725 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 250 291 23 35 chr3 37230141 37230227 -190294351 - L2 LINE L2 -1 3271 3187 282 298 64 64 chr3 37230241 37230429 -190294149 + L2 LINE L2 1485 1672 -1642 223 298 0 0 chr3 37230437 37230494 -190294084 + L2 LINE L2 3251 3307 -6 182 279 0 0 chr3 37230508 37230551 -190294027 - MER5B DNA MER1_type 0 178 136 1302 284 107 63 chr3 37230585 37231604 -190292974 + L2 LINE L2 1686 2749 -565 277 338 147 0 chr3 37231688 37231824 -190292754 + L2 LINE L2 3117 3272 0 296 252 18 45 chr3 37232109 37232220 -190292358 + MIR SINE MIR 53 160 -102 306 250 0 0 chr3 37233270 37233334 -190291244 - L2 LINE L2 0 3313 3250 189 0 0 0 chr3 37233884 37233905 -190290673 + (T)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr3 37233905 37233935 -190290643 + (TG)n Simple_repeat Simple_repeat 1 30 0 499 250 149 0 chr3 37234582 37234796 -190289782 + L1MD3 LINE L1 6069 7984 -11 274 246 0 0 chr3 37235859 37235924 -190288654 + CT-rich Low_complexity Low_complexity 2 66 0 662 283 126 9 chr3 37236804 37237034 -190287544 + MIR SINE MIR 3 259 -3 21 36 0 0 chr3 37237117 37237145 -190287433 + AT_rich Low_complexity Low_complexity 1 28 0 209 325 26 0 chr3 37237151 37237228 -190287350 - L2 LINE L2 -6 3307 3229 333 320 20 85 chr3 37237505 37237752 -190286826 - MLT1J LTR MaLR -173 338 108 222 37 0 0 chr3 37238844 37238871 -190285707 + (CA)n Simple_repeat Simple_repeat 2 28 0 7025 41 0 9 chr3 37238957 37239828 -190284750 + L1PA5 LINE L1 5286 6148 -6 611 287 69 84 chr3 37240395 37240729 -190283849 - L2 LINE L2 -11 3302 2974 2260 103 0 6 chr3 37241773 37242085 -190282493 + AluSg SINE Alu 1 310 0 411 236 194 18 chr3 37243146 37243311 -190281267 - MIR SINE MIR -49 213 20 215 246 15 31 chr3 37243426 37243491 -190281087 + L2 LINE L2 3250 3313 0 1402 123 22 9 chr3 37245832 37246059 -190278519 + L1MA1 LINE L1 6073 6302 0 1768 212 92 10 chr3 37246868 37247260 -190277318 + MSTB1 LTR MaLR 9 432 0 200 200 46 0 chr3 37247790 37247855 -190276723 + (TA)n Simple_repeat Simple_repeat 2 69 0 311 306 86 92 chr3 37249510 37249846 -190274732 + L2 LINE L2 2975 3308 -5 258 349 121 0 chr3 37249845 37249977 -190274601 - MIR SINE MIR -86 176 29 * 499 218 18 18 chr3 37250093 37250203 -190274375 + MER20 DNA MER1_type 1 110 -109 188 396 44 11 chr3 37250351 37250442 -190274136 - L2 LINE L2 -78 3194 3101 767 202 11 71 chr3 37250601 37250784 -190273794 + MER20 DNA MER1_type 47 218 -1 22 0 0 0 chr3 37253626 37253648 -190270930 + AT_rich Low_complexity Low_complexity 1 22 0 1923 189 17 3 chr3 37253895 37254255 -190270323 - MLT1A1 LTR MaLR 0 365 1 308 168 46 130 chr3 37254619 37254750 -190269828 - L1MC5 LINE L1 -60 7901 7782 31 26 0 0 chr3 37254759 37254797 -190269781 + AT_rich Low_complexity Low_complexity 1 38 0 227 250 0 0 chr3 37254807 37254871 -190269707 - L1MC5 LINE L1 -197 7764 7701 702 187 249 13 chr3 37255663 37255888 -190268690 - MER5C DNA MER1_type -3 321 44 277 301 0 0 chr3 37256298 37256371 -190268207 + L2 LINE L2 3238 3310 -3 543 287 116 6 chr3 37258593 37258757 -190265821 + MIR SINE MIR 3 184 -78 340 343 102 6 chr3 37258924 37259268 -190265310 - L1ME4a LINE L1 -212 5909 5533 346 276 49 0 chr3 37259680 37259782 -190264796 + MER45 DNA AcHobo 1 117 -61 1593 121 25 0 chr3 37259789 37260029 -190264549 - L1M2 LINE L1 -577 5714 5469 240 197 76 30 chr3 37260044 37260110 -190264468 + MER45 DNA AcHobo 1513 1581 0 5714 133 40 6 chr3 37260267 37261214 -190263364 + L1MA8 LINE L1 5259 6237 -54 23 0 0 0 chr3 37261214 37261237 -190263341 + AT_rich Low_complexity Low_complexity 1 23 0 294 311 59 25 chr3 37261652 37261771 -190262807 - MIR3 SINE MIR -37 171 49 236 296 154 47 chr3 37261955 37262124 -190262454 + MIR SINE MIR 34 220 -42 234 0 0 0 chr3 37262127 37262153 -190262425 + (CA)n Simple_repeat Simple_repeat 1 26 0 412 256 0 0 chr3 37262275 37262353 -190262225 + FLAM_C SINE Alu 26 103 -40 421 271 34 62 chr3 37262805 37262863 -190261715 - L1ME1 LINE L1 -5 6161 6103 2166 71 7 3 chr3 37262863 37263168 -190261410 + AluSq SINE Alu 3 308 0 421 271 34 62 chr3 37263168 37263285 -190261293 - L1ME1 LINE L1 -63 6103 5990 663 215 48 16 chr3 37264005 37264191 -190260387 + L1ME3 LINE L1 5880 6071 -91 266 224 104 0 chr3 37264369 37264436 -190260142 + MIR3 SINE MIR 123 196 -12 306 278 130 17 chr3 37264458 37264573 -190260005 - L2 LINE L2 0 3313 3186 1951 127 3 38 chr3 37264869 37265185 -190259393 + AluSq SINE Alu 1 305 -8 1147 84 19 35 chr3 37265750 37265941 -190258637 + L1PA8A LINE L1 5938 6154 -1 184 313 16 0 chr3 37266232 37266296 -190258282 + MIR SINE MIR 86 150 -112 21 0 0 0 chr3 37266810 37266831 -190257747 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 37267213 37267248 -190257330 + AT_rich Low_complexity Low_complexity 1 35 0 236 318 94 0 chr3 37268672 37268757 -190255821 + MIR3 SINE MIR 104 196 -12 379 267 92 51 chr3 37268781 37268976 -190255602 - L2 LINE L2 0 3313 3111 667 227 41 72 chr3 37269349 37269496 -190255082 + MIR SINE MIR 9 150 -112 1972 75 50 4 chr3 37269496 37269774 -190254804 + AluY SINE Alu 4 294 -17 667 227 41 72 chr3 37269774 37269820 -190254758 + MIR SINE MIR 150 196 -66 2386 54 7 7 chr3 37269967 37270265 -190254313 + AluY SINE Alu 1 298 -13 1380 169 93 35 chr3 37271545 37271889 -190252689 + THE1B LTR MaLR 1 364 0 1870 134 0 14 chr3 37272069 37272352 -190252226 + AluSq SINE Alu 2 280 -33 366 23 0 0 chr3 37272354 37272397 -190252181 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 254 226 98 59 chr3 37272830 37272932 -190251646 + MIR SINE MIR 62 167 -95 358 277 94 96 chr3 37273404 37273595 -190250983 + MIR SINE MIR 10 220 -42 321 242 44 11 chr3 37273665 37273756 -190250822 + MIR SINE MIR 99 192 -70 205 345 57 68 chr3 37273915 37273993 -190250585 + L2 LINE L2 2915 2992 -280 778 155 170 46 chr3 37273993 37274187 -190250391 - MER20 DNA MER1_type 0 219 2 205 345 57 68 chr3 37274187 37274404 -190250174 + L2 LINE L2 2992 3207 -65 233 280 0 0 chr3 37274432 37274482 -190250096 + polypurine Low_complexity Low_complexity 1 50 0 975 243 93 29 chr3 37275320 37275695 -190248883 - HsTC2 DNA Tc2 -39 1859 1285 440 223 149 8 chr3 37275699 37275820 -190248758 - HsTC2 DNA Tc2 -1757 141 4 379 298 32 32 chr3 37275884 37276008 -190248570 + MIR SINE MIR 17 140 -122 255 200 33 33 chr3 37277105 37277165 -190247413 + L2 LINE L2 3206 3265 -7 377 331 27 27 chr3 37277290 37277438 -190247140 + MER5A DNA MER1_type 42 189 0 181 298 35 18 chr3 37280456 37280513 -190244065 - MIR SINE MIR -135 73 16 1160 237 113 4 chr3 37281143 37281417 -190243161 + LTR16C LTR ERVL 188 491 0 1957 273 43 20 chr3 37281756 37282360 -190242218 + L2 LINE L2 2164 2781 -533 315 0 0 0 chr3 37282695 37282730 -190241848 + (TG)n Simple_repeat Simple_repeat 2 36 0 274 359 0 47 chr3 37285947 37286075 -190238503 + MER5A DNA MER1_type 40 161 -28 285 51 0 0 chr3 37286242 37286281 -190238297 + (GA)n Simple_repeat Simple_repeat 2 40 0 345 24 0 0 chr3 37286912 37286954 -190237624 + (CA)n Simple_repeat Simple_repeat 2 43 0 776 253 16 5 chr3 37287457 37287651 -190236927 + MIR SINE MIR 32 227 -35 658 269 118 38 chr3 37287686 37288211 -190236367 - L1ME4a LINE L1 -28 6093 5527 243 214 24 24 chr3 37289051 37289135 -190235443 + MER113 DNA MER1_type? 127 210 -311 655 262 29 24 chr3 37292720 37292926 -190231652 - MER3 DNA MER1_type 0 209 3 2275 105 0 3 chr3 37293629 37293935 -190230643 - AluSx SINE Alu -7 305 1 207 0 0 0 chr3 37294062 37294085 -190230493 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr3 37294837 37294877 -190229701 + AT_rich Low_complexity Low_complexity 1 40 0 1969 146 0 16 chr3 37294920 37295229 -190229349 - AluJb SINE Alu -8 304 1 1732 181 0 28 chr3 37296928 37297249 -190227329 - AluJb SINE Alu 0 312 1 24 67 0 0 chr3 37298509 37298554 -190226024 + AT_rich Low_complexity Low_complexity 1 45 0 364 290 48 0 chr3 37299842 37299966 -190224612 + MIR SINE MIR 57 186 -76 186 43 0 0 chr3 37300344 37300367 -190224211 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 263 291 0 23 chr3 37301076 37301162 -190223416 - Charlie8 DNA MER1_type -2195 222 139 468 0 0 0 chr3 37301178 37301230 -190223348 + (TG)n Simple_repeat Simple_repeat 2 53 0 1665 185 10 27 chr3 37301256 37301554 -190223024 - AluSx SINE Alu -19 293 1 229 177 40 153 chr3 37301717 37301841 -190222737 + MIR SINE MIR 103 212 -50 5959 162 66 8 chr3 37302061 37303222 -190221356 + Tigger3b DNA MER2_type 2 1230 -1 615 261 151 7 chr3 37303571 37303843 -190220735 - MLT1J1 LTR MaLR -133 313 3 2840 60 0 0 chr3 37304242 37304592 -190219986 - L1P2 LINE L1 -422 5732 5383 551 73 0 0 chr3 37304589 37304671 -190219907 + L1P LINE L1 4625 4706 -1440 * 220 261 146 39 chr3 37304723 37304853 -190219725 + MIR SINE MIR 118 261 -1 373 185 74 9 chr3 37304942 37305050 -190219528 - MER53 DNA DNA -52 137 23 1269 218 42 18 chr3 37306879 37307163 -190217415 + AluJo SINE Alu 1 291 -21 2221 129 3 0 chr3 37309049 37309358 -190215220 - AluSg SINE Alu 0 310 1 319 233 0 0 chr3 37309526 37309612 -190214966 + (TA)n Simple_repeat Simple_repeat 2 87 0 780 178 0 15 chr3 37310275 37310410 -190214168 + FLAM_C SINE Alu 1 133 0 25 31 0 0 chr3 37310678 37310710 -190213868 + AT_rich Low_complexity Low_complexity 1 32 0 1714 155 79 0 chr3 37310753 37311031 -190213547 + AluJo SINE Alu 1 300 -12 706 95 0 0 chr3 37312535 37312630 -190211948 - AluSg/x SINE Alu -12 300 206 1846 110 0 0 chr3 37312630 37312867 -190211711 - AluSq SINE Alu -76 237 1 24 0 0 0 chr3 37313397 37313421 -190211157 + AT_rich Low_complexity Low_complexity 1 24 0 350 306 76 25 chr3 37314079 37314236 -190210342 + MIR SINE MIR 49 213 -49 476 343 75 8 chr3 37314843 37315082 -190209496 + MIR SINE MIR 4 258 -4 564 264 132 0 chr3 37315135 37315302 -190209276 - MER5A DNA MER1_type 0 189 1 2106 90 17 13 chr3 37315622 37315953 -190208625 - AluSc SINE Alu 0 309 1 4087 181 18 9 chr3 37316043 37316831 -190207747 - L1MB3 LINE L1 -2 6417 5623 570 213 20 0 chr3 37316826 37316976 -190207602 - L1MB3 LINE L1 -1656 4726 4574 * 1148 195 102 8 chr3 37316969 37317430 -190207148 - L1MB3 LINE L1 -3579 2803 2302 * 3526 199 31 20 chr3 37317426 37318138 -190206440 - L1MB3 LINE L1 -5646 738 19 180 362 81 27 chr3 37319199 37319384 -190205194 - MIR SINE MIR -5 257 63 23 54 0 0 chr3 37319674 37319711 -190204867 + AT_rich Low_complexity Low_complexity 1 37 0 206 118 0 0 chr3 37319889 37319923 -190204655 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 37320587 37320610 -190203968 + AT_rich Low_complexity Low_complexity 1 23 0 331 302 35 17 chr3 37320646 37320762 -190203816 + L2 LINE L2 3196 3313 0 2129 118 0 0 chr3 37321044 37321331 -190203247 + AluSc SINE Alu 1 287 -22 1016 295 113 27 chr3 37322752 37323278 -190201300 + L2 LINE L2 2740 3313 0 26 0 0 0 chr3 37323590 37323616 -190200962 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr3 37323865 37323903 -190200675 + AT_rich Low_complexity Low_complexity 1 38 0 796 238 32 11 chr3 37324172 37324357 -190200221 + MER5A DNA MER1_type 1 189 0 474 275 87 5 chr3 37324932 37325139 -190199439 - LTR33A LTR ERVL 0 523 300 284 318 116 0 chr3 37325382 37325511 -190199067 - LTR50 LTR ERVL -629 166 23 881 271 149 15 chr3 37325777 37326172 -190198406 + LTR16A1 LTR ERVL 8 455 -2 246 216 0 95 chr3 37326224 37326298 -190198280 - MIR SINE MIR -117 145 79 543 151 85 0 chr3 37327001 37327107 -190197471 + MLT1C LTR MaLR 1 115 -352 38591 80 10 11 chr3 37327126 37333269 -190191309 + L1PA5 LINE L1 11 6148 -6 393 279 83 49 chr3 37333278 37333686 -190190892 - HAL1b LINE L1 -480 868 447 2521 128 59 2 chr3 37333703 37334108 -190190470 - MSTA LTR MaLR 0 428 1 394 274 34 34 chr3 37334672 37334789 -190189789 + MIR SINE MIR 16 132 -76 384 339 63 42 chr3 37335140 37335379 -190189199 + L3b LINE CR1 1105 1348 -235 782 233 12 12 chr3 37335878 37336050 -190188528 + MER5A DNA MER1_type 18 189 0 182 37 37 0 chr3 37336606 37336633 -190187945 + (TA)n Simple_repeat Simple_repeat 1 28 0 434 258 17 8 chr3 37337695 37337815 -190186763 - L1ME2 LINE L1 -19 6145 6025 5220 97 4 5 chr3 37338173 37338914 -190185664 - L1PA11 LINE L1 0 6174 5435 1795 125 3 35 chr3 37338981 37339291 -190185287 - AluSc SINE Alu 0 301 1 322 226 113 61 chr3 37339312 37339427 -190185151 + MER117 DNA MER1_type 36 156 -41 186 71 0 0 chr3 37340424 37340452 -190184126 + (CA)n Simple_repeat Simple_repeat 2 29 0 378 42 0 0 chr3 37341618 37341666 -190182912 + (CA)n Simple_repeat Simple_repeat 2 49 0 2303 53 0 11 chr3 37341881 37342199 -190182379 - AluY SINE Alu 0 315 1 25 0 0 0 chr3 37342984 37343009 -190181569 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 37343075 37343099 -190181479 + AT_rich Low_complexity Low_complexity 1 24 0 480 238 74 64 chr3 37344398 37344600 -190179978 + MIR SINE MIR 47 250 -12 673 243 7 7 chr3 37344985 37345129 -190179449 - LTR16C LTR ERVL -135 356 213 22 0 0 0 chr3 37345166 37345188 -190179390 + AT_rich Low_complexity Low_complexity 1 22 0 1957 176 8 3 chr3 37345776 37346135 -190178443 - MER46B DNA MER2_type 0 236 1 391 297 71 0 chr3 37347105 37347287 -190177291 - L1MC4a LINE L1 -1878 5930 5736 1813 156 17 3 chr3 37347382 37347670 -190176908 - AluSx SINE Alu -17 295 4 199 205 51 0 chr3 37348068 37348107 -190176471 - MER5A DNA MER1_type -70 119 79 211 390 8 8 chr3 37349152 37349270 -190175308 - L2 LINE L2 -467 2847 2730 1952 68 0 0 chr3 37349292 37349528 -190175050 + AluSq SINE Alu 72 307 -6 4412 116 127 103 chr3 37349630 37351154 -190173424 + pTR5 LTR ERV1 743 2438 0 242 363 94 33 chr3 37351269 37351481 -190173097 - MIR SINE MIR -37 225 1 3163 151 25 6 chr3 37351992 37352509 -190172069 + MER1A DNA MER1_type 1 527 0 532 194 194 0 chr3 37352732 37352876 -190171702 + MIR SINE MIR 91 262 0 1198 262 87 18 chr3 37357036 37357437 -190167141 + LTR16A LTR ERVL 21 449 -1 427 313 103 9 chr3 37358561 37358794 -190165784 - MIR SINE MIR 0 262 8 360 264 36 55 chr3 37359149 37359220 -190165358 - L2 LINE L2 0 3313 3243 1608 134 131 3 chr3 37359220 37359518 -190165060 - MER44D DNA MER2_type 0 609 4 360 264 36 55 chr3 37359518 37359556 -190165022 - L2 LINE L2 -70 3243 3206 448 285 44 32 chr3 37359742 37359900 -190164678 - MIR3 SINE MIR -5 203 44 2297 190 20 93 chr3 37360399 37360531 -190164047 + MLT2B2 LTR ERVL 1 141 -374 1817 192 0 0 chr3 37360531 37360838 -190163740 - AluJb SINE Alu -4 308 2 2297 190 20 93 chr3 37360838 37361252 -190163326 + MLT2B2 LTR ERVL 141 507 -8 26 0 0 0 chr3 37361334 37361360 -190163218 + AT_rich Low_complexity Low_complexity 1 26 0 2020 165 0 0 chr3 37361999 37362308 -190162270 + AluJb SINE Alu 1 309 -3 448 205 0 0 chr3 37362320 37362403 -190162175 - L2 LINE L2 -9 3304 3222 * 760 266 142 63 chr3 37362374 37362817 -190161761 - L2 LINE L2 -687 2627 2150 303 93 0 0 chr3 37362965 37363008 -190161570 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 315 148 13 chr3 37363452 37363601 -190160977 - MIR SINE MIR -20 242 74 424 304 99 16 chr3 37364282 37364473 -190160105 + L1MC/D LINE L1 5458 5664 -2144 361 286 32 7 chr3 37364620 37364774 -190159804 - L1ME4a LINE L1 -3 6118 5961 619 306 121 0 chr3 37365269 37365475 -190159103 + MIR SINE MIR 18 248 -14 847 298 94 22 chr3 37366561 37366923 -190157655 - LTR16C LTR ERVL -14 477 90 467 269 228 0 chr3 37367271 37367416 -190157162 - MER5A DNA MER1_type -3 186 9 206 229 200 29 chr3 37367512 37367582 -190156996 + MIR SINE MIR 30 111 -97 857 327 77 46 chr3 37367811 37368425 -190156153 + L2 LINE L2 2313 2945 -369 255 31 0 0 chr3 37368923 37368955 -190155623 + (TG)n Simple_repeat Simple_repeat 1 32 0 403 208 13 13 chr3 37369721 37369823 -190154755 - MER20 DNA MER1_type -115 104 3 2949 244 68 22 chr3 37370439 37371191 -190153387 - L1MC4 LINE L1 -6 8036 7225 2308 103 3 3 chr3 37371191 37371502 -190153076 - AluSq SINE Alu -2 311 1 2949 244 68 22 chr3 37371502 37371751 -190152827 - L1MC4 LINE L1 -817 7225 6989 361 307 52 0 chr3 37372576 37372729 -190151849 - MIR SINE MIR -3 259 99 207 316 62 57 chr3 37373039 37373232 -190151346 + L2 LINE L2 3120 3313 0 15161 96 13 6 chr3 37373545 37376472 -190148106 + L1PA8 LINE L1 3093 6031 -141 372 45 0 0 chr3 37377240 37377284 -190147294 - MLT2C1 LTR ERVL 0 397 354 351 243 0 28 chr3 37377367 37377544 -190147034 + CT-rich Low_complexity Low_complexity 2 173 0 1221 275 84 23 chr3 37377574 37378003 -190146575 - MLT2B1 LTR ERVL -65 455 1 26 0 0 0 chr3 37378211 37378237 -190146341 + AT_rich Low_complexity Low_complexity 1 26 0 1886 143 18 6 chr3 37378800 37379136 -190145442 - L1M2 LINE L1 -594 5706 5367 1541 163 54 33 chr3 37379148 37379479 -190145099 - L1M2 LINE L1 -901 5245 4908 210 37 0 0 chr3 37379495 37379522 -190145056 + (CA)n Simple_repeat Simple_repeat 2 28 0 2914 145 8 14 chr3 37379523 37380028 -190144550 + L1MA5 LINE L1 5795 6296 -4 783 193 114 90 chr3 37380132 37380422 -190144156 + MER5C DNA MER1_type 22 318 -6 337 268 49 41 chr3 37381275 37381398 -190143180 + MIR3 SINE MIR 55 178 -30 23 33 0 0 chr3 37381411 37381441 -190143137 + AT_rich Low_complexity Low_complexity 1 30 0 1129 224 84 41 chr3 37382194 37382466 -190142112 - MER113 DNA MER1_type? -88 433 135 2366 52 10 0 chr3 37382466 37382754 -190141824 - AluY SINE Alu -20 291 1 1129 224 84 41 chr3 37382754 37382896 -190141682 - MER113 DNA MER1_type? -386 135 1 272 285 50 69 chr3 37382901 37383083 -190141495 + MIR SINE MIR 17 188 -74 216 67 0 0 chr3 37383187 37383217 -190141361 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 215 194 0 0 chr3 37383274 37383310 -190141268 + (TGG)n Simple_repeat Simple_repeat 1 36 0 366 91 0 0 chr3 37383311 37383366 -190141212 + (TG)n Simple_repeat Simple_repeat 1 55 0 909 168 22 32 chr3 37384120 37384305 -190140273 - MER5A DNA MER1_type -6 183 1 571 301 169 0 chr3 37384318 37384531 -190140047 + MIR SINE MIR 2 250 -12 2571 52 0 10 chr3 37384651 37384961 -190139617 + AluY SINE Alu 1 307 -4 22 0 0 0 chr3 37385454 37385476 -190139102 + AT_rich Low_complexity Low_complexity 1 22 0 2215 109 0 3 chr3 37386239 37386542 -190138036 + AluSg SINE Alu 1 302 -8 2119 168 26 5 chr3 37387149 37387531 -190137047 - MLT1B LTR MaLR 0 390 1 210 365 75 0 chr3 37387762 37387869 -190136709 + L2 LINE L2 2650 2764 -550 479 239 179 0 chr3 37388770 37388904 -190135674 - MER105 DNA DNA -3 201 44 727 211 39 61 chr3 37388904 37389084 -190135494 + MER5A DNA MER1_type 3 178 -11 743 195 5 124 chr3 37389109 37389227 -190135351 - MER5A DNA MER1_type -26 163 73 2227 50 0 0 chr3 37389227 37389504 -190135074 - L1PA4 LINE L1 -3 6152 5876 743 195 5 124 chr3 37389504 37389570 -190135008 - MER5A DNA MER1_type -116 73 1 240 324 86 29 chr3 37389677 37389782 -190134796 + L2 LINE L2 3161 3271 -1 2209 110 0 7 chr3 37389981 37390281 -190134297 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr3 37392330 37392352 -190132226 + AT_rich Low_complexity Low_complexity 1 22 0 233 316 44 35 chr3 37392714 37392828 -190131750 + MIR SINE MIR 15 129 -133 189 0 0 0 chr3 37392831 37392852 -190131726 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 576 65 0 0 chr3 37392854 37392931 -190131647 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 939 140 14 0 chr3 37393063 37393206 -190131372 - MER61D LTR ERV1 0 501 357 275 105 0 0 chr3 37393255 37393293 -190131285 - MER61B LTR ERV1 -286 139 102 * 708 239 6 17 chr3 37393270 37393450 -190131128 - LTR28 LTR ERV1 -842 178 1 251 310 99 78 chr3 37393451 37393796 -190130782 - L2 LINE L2 -124 3189 2838 1996 172 40 12 chr3 37393799 37394223 -190130355 - LTR23 LTR ERV1 0 437 2 9732 167 47 39 chr3 37394224 37396028 -190128550 - LTR23-int LTR ERV1 -6 5699 4409 1531 86 5 0 chr3 37396028 37396238 -190128340 - L1PA13 LINE L1 -4 6159 5949 9732 167 47 39 chr3 37396238 37397068 -190127510 - LTR23-int LTR ERV1 -1296 4409 3587 1691 171 84 47 chr3 37397063 37397205 -190127373 - LTR23-int LTR ERV1 -3442 1681 1546 * 2062 202 124 63 chr3 37397205 37397982 -190126596 - LTR1B LTR ERV1 0 826 3 1691 171 84 47 chr3 37397982 37398290 -190126288 - LTR23-int LTR ERV1 -3577 1546 1214 623 286 103 13 chr3 37398290 37398524 -190126054 - MER34C LTR ERV1 -171 414 160 2058 228 45 51 chr3 37398526 37399155 -190125423 - LTR23-int LTR ERV1 -3695 2636 751 770 241 24 20 chr3 37399189 37399442 -190125136 - LTR23-int LTR ERV1 -4396 727 474 2090 117 17 0 chr3 37399442 37399732 -190124846 - AluSx SINE Alu -17 295 1 727 225 20 81 chr3 37399742 37400099 -190124479 - LTR23-int LTR ERV1 -4643 480 1 2178 122 77 21 chr3 37400099 37400510 -190124068 - LTR23 LTR ERV1 0 467 1 686 301 58 58 chr3 37400903 37401371 -190123207 - LTR33 LTR ERVL -8 513 46 2149 243 70 73 chr3 37401610 37401799 -190122779 - MER21B LTR ERV1 -62 801 613 2452 126 3 8 chr3 37401799 37402165 -190122413 - THE1B LTR MaLR 0 364 1 2149 243 70 73 chr3 37402165 37402779 -190121799 - MER21B LTR ERV1 -250 613 1 537 288 8 0 chr3 37402818 37402950 -190121628 - Charlie8 DNA MER1_type -2263 154 22 733 252 13 13 chr3 37402986 37403145 -190121433 + MER5B DNA MER1_type 1 159 -19 1853 214 70 13 chr3 37403148 37403605 -190120973 - L1MD3 LINE L1 -1 7994 7512 292 306 74 9 chr3 37403785 37403893 -190120685 + MIR SINE MIR 38 152 -56 342 80 0 0 chr3 37405732 37405782 -190118796 + (CA)n Simple_repeat Simple_repeat 2 51 0 612 292 41 0 chr3 37406517 37406688 -190117890 - MER45A DNA AcHobo 0 178 1 270 309 103 29 chr3 37407180 37407355 -190117223 - Tigger8 DNA MER2_type -19 647 460 312 340 104 19 chr3 37407381 37407649 -190116929 - Tigger8 DNA MER2_type -313 353 63 299 266 149 32 chr3 37407900 37408054 -190116524 + MIR SINE MIR 2 173 -89 227 246 70 0 chr3 37408059 37408116 -190116462 - L2 LINE L2 0 3272 3212 524 261 8 0 chr3 37408807 37408937 -190115641 + MER5C DNA MER1_type 1 131 -193 292 238 60 0 chr3 37408953 37409037 -190115541 + MER5C DNA MER1_type 232 320 -4 30 0 0 0 chr3 37410013 37410043 -190114535 + AT_rich Low_complexity Low_complexity 1 30 0 2155 127 73 15 chr3 37411222 37411562 -190113016 - THE1B LTR MaLR 0 364 5 314 263 51 34 chr3 37414267 37414385 -190110193 + LTR16C LTR ERVL 319 438 -53 29 28 0 0 chr3 37415345 37415381 -190109197 + AT_rich Low_complexity Low_complexity 1 36 0 220 331 90 60 chr3 37416787 37416920 -190107658 + L2 LINE L2 3134 3270 -2 1204 234 62 83 chr3 37416933 37417099 -190107479 + MLT1D LTR MaLR 1 169 -336 2010 149 136 5 chr3 37417099 37417474 -190107104 - MSTA LTR MaLR 0 428 5 1204 234 62 83 chr3 37417474 37417823 -190106755 + MLT1D LTR MaLR 169 505 0 1384 179 110 11 chr3 37417940 37418253 -190106325 - MER31A LTR ERV1 0 485 8 22 0 0 0 chr3 37418830 37418852 -190105726 + AT_rich Low_complexity Low_complexity 1 22 0 857 333 35 15 chr3 37419122 37419527 -190105051 + LTR16C LTR ERVL 76 488 -3 1883 200 94 2 chr3 37420052 37420507 -190104071 + Charlie1b DNA MER1_type 11 507 -16 237 98 0 0 chr3 37420716 37420757 -190103821 + (T)n Simple_repeat Simple_repeat 1 41 0 300 91 0 0 chr3 37421346 37421390 -190103188 + (TG)n Simple_repeat Simple_repeat 1 44 0 183 42 0 0 chr3 37421389 37421413 -190103165 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 22 35 0 0 chr3 37421899 37421928 -190102650 + AT_rich Low_complexity Low_complexity 1 29 0 648 0 0 0 chr3 37422287 37422359 -190102219 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 474 145 0 0 chr3 37422361 37422430 -190102148 - AluS SINE Alu -19 293 225 24 32 0 0 chr3 37422614 37422645 -190101933 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr3 37422867 37422911 -190101667 + AT_rich Low_complexity Low_complexity 1 44 0 203 309 62 10 chr3 37423138 37423235 -190101343 + MIR SINE MIR 31 132 -130 478 33 0 0 chr3 37423245 37423305 -190101273 - L1PA4 LINE L1 -87 6068 6009 617 85 0 0 chr3 37423305 37423385 -190101193 + L1PA5 LINE L1 6068 6149 -5 2086 118 0 53 chr3 37424582 37424904 -190099674 - AluSx SINE Alu -7 305 1 22 0 0 0 chr3 37425810 37425832 -190098746 + AT_rich Low_complexity Low_complexity 1 22 0 1047 237 5 9 chr3 37426628 37426852 -190097726 - MER58A DNA MER1_type 0 224 2 21 0 0 0 chr3 37426873 37426894 -190097684 + AT_rich Low_complexity Low_complexity 1 21 0 2034 147 20 0 chr3 37427312 37427642 -190096936 + AluSx SINE Alu 1 336 0 27 0 0 0 chr3 37428097 37428124 -190096454 + AT_rich Low_complexity Low_complexity 1 27 0 458 19 0 0 chr3 37428263 37428315 -190096263 + (A)n Simple_repeat Simple_repeat 1 52 0 514 173 8 90 chr3 37428869 37429002 -190095576 + FLAM_A SINE Alu 2 123 -10 1609 227 80 107 chr3 37431171 37431603 -190092975 - L1ME3A LINE L1 -9 6161 5756 770 246 55 10 chr3 37431603 37431802 -190092776 + MER3 DNA MER1_type 2 209 0 1609 227 80 107 chr3 37431802 37432089 -190092489 - L1ME3A LINE L1 -414 5756 5463 1737 169 35 56 chr3 37432156 37432529 -190092049 + MLT1A1 LTR MaLR 1 365 0 2143 111 14 3 chr3 37433111 37433408 -190091170 - AluSq SINE Alu -12 301 2 2696 90 3 6 chr3 37433453 37433818 -190090760 + THE1B LTR MaLR 1 364 0 232 274 113 75 chr3 37433844 37434030 -190090548 + MIR SINE MIR 53 245 -17 977 226 65 5 chr3 37434578 37434795 -190089783 - MLT1D LTR MaLR 0 505 276 180 316 112 59 chr3 37435088 37435240 -190089338 - MIR3 SINE MIR -7 201 42 21 0 0 0 chr3 37436912 37436933 -190087645 + AT_rich Low_complexity Low_complexity 1 21 0 259 329 0 0 chr3 37438751 37438836 -190085742 + MIR SINE MIR 133 217 -45 3156 247 48 40 chr3 37439014 37442310 -190082268 + L1M3c LINE L1 11 3052 -3158 298 284 95 17 chr3 37443144 37443260 -190081318 - MIR SINE MIR -17 245 121 596 251 11 49 chr3 37443347 37443530 -190081048 + MIR SINE MIR 66 241 -21 237 159 0 0 chr3 37443974 37444018 -190080560 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 37444395 37444418 -190080160 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr3 37445646 37445679 -190078899 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 1138 54 16 1 chr3 37445679 37445860 -190078718 - L1PA4 LINE L1 -24 6131 5941 1095 251 43 10 chr3 37445876 37446175 -190078403 - L1ME1 LINE L1 -150 6016 5708 247 150 17 67 chr3 37446327 37446387 -190078191 + L1PB1 LINE L1 144 200 -6663 13243 170 56 39 chr3 37446387 37452536 -190072042 + L1PB1 LINE L1 634 6867 0 1746 124 0 4 chr3 37452699 37452957 -190071621 - AluSc SINE Alu -52 257 1 839 315 31 31 chr3 37452957 37453500 -190071078 - L1MC4a LINE L1 -1949 5859 5317 29 0 0 0 chr3 37453770 37453799 -190070779 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 37453850 37453873 -190070705 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr3 37455551 37455578 -190069000 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 740 213 0 0 chr3 37456947 37457083 -190067495 + MIR SINE MIR 25 160 -102 2055 125 30 3 chr3 37457392 37457695 -190066883 + AluSx SINE Alu 1 311 -1 2161 183 44 2 chr3 37458228 37458637 -190065941 + MSTB LTR MaLR 1 426 0 2437 61 0 0 chr3 37458741 37459036 -190065542 + AluY SINE Alu 1 295 -16 407 270 124 27 chr3 37459862 37460047 -190064531 + L2 LINE L2 3111 3313 0 258 273 0 125 chr3 37460091 37460219 -190064359 + MIR3 SINE MIR 85 196 -12 970 166 11 6 chr3 37460445 37460620 -190063958 - Tigger1 DNA MER2_type -1 2417 2242 431 129 0 14 chr3 37460620 37460690 -190063888 - AluJ/FLAM SINE Alu -239 73 5 2965 118 5 2 chr3 37460695 37461143 -190063435 - Tigger1 DNA MER2_type -670 1748 1300 2171 107 0 7 chr3 37461143 37461442 -190063136 - AluSc SINE Alu -12 297 1 4090 121 22 5 chr3 37461443 37462082 -190062496 - Tigger1 DNA MER2_type -1286 1132 483 1809 186 25 8 chr3 37462326 37462681 -190061897 - Tigger1 DNA MER2_type -1932 486 126 799 186 21 4 chr3 37462681 37462918 -190061660 + GA-rich Low_complexity Low_complexity 1 241 0 234 91 0 0 chr3 37465602 37465635 -190058943 + (CA)n Simple_repeat Simple_repeat 1 33 0 2169 107 0 3 chr3 37465873 37466163 -190058415 - AluSx SINE Alu -9 303 15 235 327 50 0 chr3 37466716 37466817 -190057761 - MIR SINE MIR -70 192 87 197 282 26 0 chr3 37466851 37466890 -190057688 + MIR SINE MIR 36 75 -133 214 261 101 0 chr3 37467665 37467734 -190056844 - MIR3 SINE MIR -39 169 94 351 65 0 0 chr3 37468573 37468619 -190055959 + (TG)n Simple_repeat Simple_repeat 1 46 0 5409 155 41 1 chr3 37468746 37469696 -190054882 + Tigger3b DNA MER2_type 2 989 -242 227 245 47 38 chr3 37469934 37470040 -190054538 + L1MC/D LINE L1 5788 5894 -1914 470 250 35 9 chr3 37473749 37473865 -190050713 - L2 LINE L2 -3 3310 3192 28 0 0 0 chr3 37475273 37475301 -190049277 + AT_rich Low_complexity Low_complexity 1 28 0 321 338 8 0 chr3 37475387 37475520 -190049058 - L1ME LINE L1 -348 5773 5640 10922 30 0 0 chr3 37475715 37477018 -190047560 - L1P LINE L1 -1449 4697 3395 422 19 0 0 chr3 37477018 37477069 -190047509 + L1PA3 LINE L1 6100 6151 -4 215 211 0 0 chr3 37477695 37477733 -190046845 + MIR SINE MIR 1 38 -224 2577 57 3 12 chr3 37477828 37478164 -190046414 + L1PB2 LINE L1 5757 6089 -62 663 171 0 8 chr3 37478265 37478376 -190046202 + L1 LINE L1 3713 3823 -2318 1979 181 44 7 chr3 37478376 37478711 -190045867 + L1MA9 LINE L1 5883 6240 -72 189 0 0 0 chr3 37478711 37478732 -190045846 + (TA)n Simple_repeat Simple_repeat 2 22 0 1979 181 44 7 chr3 37478732 37478803 -190045775 + L1MA9 LINE L1 6240 6307 -5 454 79 26 0 chr3 37479561 37479637 -190044941 + (TA)n Simple_repeat Simple_repeat 2 79 0 1421 201 10 41 chr3 37479980 37480294 -190044284 + AluJb SINE Alu 6 309 -3 38 68 0 0 chr3 37481515 37481588 -190042990 + AT_rich Low_complexity Low_complexity 1 73 0 1597 213 50 39 chr3 37482088 37482605 -190041973 - Charlie1b DNA MER1_type 0 523 1 330 286 76 43 chr3 37482623 37483155 -190041423 - L1ME LINE L1 -299 5822 5268 182 133 0 0 chr3 37483532 37483562 -190041016 + L2 LINE L2 3284 3313 0 214 100 0 0 chr3 37484399 37484429 -190040149 + L2 LINE L2 3243 3272 0 1850 215 130 0 chr3 37484513 37484959 -190039619 + MLT1D LTR MaLR 2 505 0 1702 169 20 10 chr3 37485602 37485898 -190038680 + AluSx SINE Alu 1 299 -13 272 25 50 0 chr3 37486158 37486198 -190038380 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 235 339 47 8 chr3 37486610 37486737 -190037841 + MIR SINE MIR 70 201 -61 313 311 91 63 chr3 37486738 37487024 -190037554 - MLT1I LTR MaLR 0 409 116 234 236 18 0 chr3 37487089 37487144 -190037434 + MIR SINE MIR 198 253 -9 235 280 329 0 chr3 37487200 37487343 -190037235 + MIR SINE MIR 66 255 -7 761 319 149 42 chr3 37487523 37488431 -190036147 - L2 LINE L2 -2 3311 2309 2396 51 0 3 chr3 37489575 37489867 -190034711 - AluY SINE Alu -2 309 19 349 282 58 32 chr3 37490481 37490637 -190033941 + L1MC5 LINE L1 7754 7913 -48 24 0 0 0 chr3 37490645 37490669 -190033909 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr3 37491100 37491139 -190033439 + (TG)n Simple_repeat Simple_repeat 2 40 0 2186 119 0 10 chr3 37491167 37491470 -190033108 + AluSg SINE Alu 5 304 -6 209 357 164 7 chr3 37492796 37492936 -190031642 + L2 LINE L2 2816 2977 -337 514 323 129 0 chr3 37492974 37493222 -190031356 + L2 LINE L2 3034 3313 0 318 293 108 45 chr3 37493314 37493536 -190031042 + MIR SINE MIR 26 261 -1 6120 100 10 6 chr3 37493740 37495258 -190029320 + L1PA13 LINE L1 4621 6161 -2 204 40 0 0 chr3 37495349 37495374 -190029204 + (T)n Simple_repeat Simple_repeat 1 25 0 2672 58 0 0 chr3 37495374 37495700 -190028878 - LTR17 LTR ERV1 -454 326 1 210 204 23 0 chr3 37497036 37497080 -190027498 - L2 LINE L2 -1 3312 3268 288 345 29 43 chr3 37498004 37498143 -190026435 + L2 LINE L2 3173 3309 -4 26 30 0 0 chr3 37498178 37498211 -190026367 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr3 37499296 37499316 -190025262 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 365 98 0 66 chr3 37499675 37499736 -190024842 - 5S rRNA rRNA -64 57 1 240 226 0 0 chr3 37501783 37501845 -190022733 + (CA)n Simple_repeat Simple_repeat 2 63 0 1746 78 25 0 chr3 37502793 37503035 -190021543 - AluY SINE Alu -5 306 59 589 209 139 47 chr3 37504091 37504263 -190020315 - MER5A DNA MER1_type 0 189 2 208 139 0 28 chr3 37504307 37504343 -190020235 + (CA)n Simple_repeat Simple_repeat 1 35 0 1105 139 0 37 chr3 37504622 37504809 -190019769 + AluSg/x SINE Alu 129 308 -2 1629 28 0 51 chr3 37505104 37505321 -190019257 + L1PA5 LINE L1 5949 6154 0 24 53 0 0 chr3 37505851 37505889 -190018689 + AT_rich Low_complexity Low_complexity 1 38 0 331 259 12 0 chr3 37506658 37506743 -190017835 - MIR SINE MIR -77 185 100 332 133 22 44 chr3 37506752 37506842 -190017736 + GA-rich Low_complexity Low_complexity 2 89 0 211 313 30 20 chr3 37506845 37506878 -190017700 - MIR SINE MIR -128 134 103 964 101 0 43 chr3 37506878 37507066 -190017512 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 211 313 30 20 chr3 37507066 37507131 -190017447 - MIR SINE MIR -159 103 35 504 285 64 12 chr3 37507806 37507978 -190016600 + MIR SINE MIR 48 228 -34 198 0 0 0 chr3 37508008 37508030 -190016548 + (A)n Simple_repeat Simple_repeat 1 22 0 591 234 19 5 chr3 37508081 37508242 -190016336 + L1MA10 LINE L1 6017 6334 0 415 208 115 118 chr3 37509408 37509696 -190014882 - MLT1H LTR MaLR -196 353 67 267 323 0 0 chr3 37511330 37511423 -190013155 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 0 0 0 chr3 37513038 37513059 -190011519 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 37513312 37513336 -190011242 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 340 94 19 0 chr3 37514081 37514134 -190010444 - Charlie1 DNA MER1_type -1 2760 2707 687 279 23 30 chr3 37514148 37514410 -190010168 - Charlie1 DNA MER1_type -159 2602 2343 248 358 45 0 chr3 37514409 37514476 -190010102 - Charlie1 DNA MER1_type -2691 70 1 * 6349 183 12 5 chr3 37514691 37515880 -190008698 - L1P LINE L1 -1161 4985 3789 501 230 29 35 chr3 37517353 37517527 -190007051 - MER104 DNA Tc2 -7 173 1 250 259 0 0 chr3 37518389 37518447 -190006131 - L2 LINE L2 0 3313 3256 271 337 110 12 chr3 37519061 37519316 -190005262 - L2 LINE L2 -1030 2284 2005 1885 157 3 32 chr3 37519882 37520227 -190004351 - MER1B DNA MER1_type -2 335 1 1558 160 34 22 chr3 37520705 37520973 -190003605 + AluJo SINE Alu 17 287 -25 27 62 0 0 chr3 37521271 37521319 -190003259 + AT_rich Low_complexity Low_complexity 1 48 0 887 254 42 5 chr3 37523292 37523509 -190001069 - MIR SINE MIR -36 226 2 581 242 13 19 chr3 37524813 37524970 -189999608 - L1MD2 LINE L1 -13 6346 6191 703 235 30 18 chr3 37525212 37525378 -189999200 + MIR SINE MIR 40 207 -55 443 99 0 14 chr3 37526352 37526423 -189998155 + (TC)n Simple_repeat Simple_repeat 1 70 0 228 321 98 27 chr3 37527555 37527667 -189996911 - L2 LINE L2 -2 3270 3151 220 289 35 18 chr3 37528143 37528257 -189996321 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 * 341 256 17 17 chr3 37528172 37528289 -189996289 + (TATG)n Simple_repeat Simple_repeat 3 119 0 283 202 81 81 chr3 37528308 37528407 -189996171 - L2 LINE L2 -40 3273 3175 327 337 82 5 chr3 37528483 37528679 -189995899 - L1MC4 LINE L1 -143 7899 7689 186 253 127 0 chr3 37528722 37528801 -189995777 - MIR SINE MIR -57 205 117 21 0 0 0 chr3 37529144 37529165 -189995413 + AT_rich Low_complexity Low_complexity 1 21 0 233 255 0 0 chr3 37529406 37529453 -189995125 - L2 LINE L2 -56 3216 3170 2139 131 24 29 chr3 37529722 37530096 -189994482 + THE1C LTR MaLR 1 372 -3 186 118 0 0 chr3 37530734 37530768 -189993810 + (TTATA)n Simple_repeat Simple_repeat 2 35 0 192 372 0 21 chr3 37531565 37531659 -189992919 + L2 LINE L2 2869 2960 -312 543 304 77 22 chr3 37531846 37532027 -189992551 + MIR SINE MIR 1 191 -71 21 57 0 0 chr3 37533308 37533343 -189991235 + AT_rich Low_complexity Low_complexity 1 35 0 1086 193 18 14 chr3 37534783 37535001 -189989577 - MER20 DNA MER1_type 0 219 1 411 78 0 0 chr3 37535248 37535312 -189989266 + (TATG)n Simple_repeat Simple_repeat 2 65 0 384 230 143 24 chr3 37536361 37536487 -189988091 - L2 LINE L2 0 3313 3173 521 228 74 37 chr3 37536490 37536652 -189987926 - MLT1A2 LTR MaLR 0 390 223 1318 174 19 0 chr3 37536658 37536893 -189987685 - AluJb SINE Alu 0 308 70 812 248 26 22 chr3 37536909 37537135 -189987443 - MLT1A2 LTR MaLR -147 227 1 23 0 0 0 chr3 37537135 37537158 -189987420 + AT_rich Low_complexity Low_complexity 1 23 0 395 325 87 33 chr3 37537163 37537555 -189987023 - L2 LINE L2 -167 3146 2729 346 205 50 56 chr3 37537703 37537727 -189986851 - L1MA10 LINE L1 -1 6333 6310 2233 238 79 2 chr3 37537727 37538346 -189986232 - L1ME2 LINE L1 -13 6151 5485 312 27 0 0 chr3 37541176 37541213 -189983365 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 159 0 0 chr3 37542407 37542451 -189982127 + GA-rich Low_complexity Low_complexity 2 45 0 263 232 195 0 chr3 37543098 37543180 -189981398 + MIR SINE MIR 109 206 -56 203 175 25 0 chr3 37544058 37544098 -189980480 + (TG)n Simple_repeat Simple_repeat 2 42 0 473 250 97 0 chr3 37544572 37544748 -189979830 + MIR SINE MIR 70 262 0 379 294 113 72 chr3 37547349 37547496 -189977082 - L1ME2 LINE L1 -860 5286 5146 1041 219 18 5 chr3 37547496 37547715 -189976863 - MER58A DNA MER1_type 0 224 3 379 294 113 72 chr3 37547715 37548100 -189976478 - L1ME2 LINE L1 -1000 5146 4778 1265 143 65 0 chr3 37548100 37548316 -189976262 + MER30 DNA MER1_type 1 230 0 379 294 113 72 chr3 37548316 37548644 -189975934 - L1ME2 LINE L1 -1368 4778 4390 1135 243 62 14 chr3 37548645 37548957 -189975621 - MSTD LTR MaLR 0 396 101 25 0 0 0 chr3 37549008 37549033 -189975545 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr3 37549052 37549105 -189975473 + AT_rich Low_complexity Low_complexity 1 53 0 248 281 148 31 chr3 37549429 37549557 -189975021 - L1MC4 LINE L1 -315 7727 7585 383 305 109 55 chr3 37549877 37550225 -189974353 - L1ME2 LINE L1 -2191 3955 3589 1694 191 0 10 chr3 37550409 37550713 -189973865 + AluJo SINE Alu 1 301 -11 197 326 54 33 chr3 37551175 37551267 -189973311 - L2 LINE L2 -12 3301 3208 235 189 0 19 chr3 37553171 37553224 -189971354 - LTR66 LTR ERVL -155 455 404 185 310 8 101 chr3 37553554 37553683 -189970895 - L2 LINE L2 -213 3059 2943 424 295 51 51 chr3 37554201 37554418 -189970160 + MARNA DNA Mariner 22 238 -348 400 184 9 18 chr3 37554454 37554568 -189970010 + (TGGA)n Simple_repeat Simple_repeat 3 115 0 475 278 72 28 chr3 37559529 37559709 -189964869 - L2 LINE L2 -4 3309 3122 364 328 22 45 chr3 37559857 37559991 -189964587 - L2 LINE L2 -5 3267 3137 358 215 38 0 chr3 37560489 37560568 -189964010 - MIR SINE MIR -68 140 59 1112 107 0 0 chr3 37563163 37563313 -189961265 + AluY SINE Alu 1 150 -161 2094 104 0 7 chr3 37563545 37563832 -189960746 - AluSq SINE Alu -26 287 3 2844 13 0 0 chr3 37564675 37564991 -189959587 + AluYb8 SINE Alu 1 316 -2 204 125 0 0 chr3 37566838 37566870 -189957708 + (T)n Simple_repeat Simple_repeat 1 32 0 2290 96 10 0 chr3 37567026 37567329 -189957249 + AluSp SINE Alu 2 307 -6 231 270 146 0 chr3 37568209 37568298 -189956280 - MER5A DNA MER1_type -84 105 4 23 0 0 0 chr3 37570644 37570667 -189953911 + AT_rich Low_complexity Low_complexity 1 23 0 231 173 0 0 chr3 37570667 37570719 -189953859 - L1MC4 LINE L1 -1339 6703 6652 24 53 0 0 chr3 37570772 37570810 -189953768 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr3 37572044 37572073 -189952505 + AT_rich Low_complexity Low_complexity 1 29 0 2572 45 0 3 chr3 37572572 37572882 -189951696 - AluY SINE Alu -2 309 1 818 199 141 21 chr3 37572969 37573160 -189951418 - MER20 DNA MER1_type 0 219 6 26 30 0 0 chr3 37573187 37573220 -189951358 + AT_rich Low_complexity Low_complexity 1 33 0 254 320 41 74 chr3 37573459 37573581 -189950997 - L2 LINE L2 -2 3270 3153 243 0 0 0 chr3 37574102 37574129 -189950449 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 475 191 12 0 chr3 37574884 37574968 -189949610 - MER5A DNA MER1_type -6 183 99 21 0 0 0 chr3 37577863 37577884 -189946694 + AT_rich Low_complexity Low_complexity 1 21 0 226 347 80 34 chr3 37579573 37579749 -189944829 + MIR3 SINE MIR 19 202 -6 506 287 72 26 chr3 37581254 37581449 -189943129 + MIR SINE MIR 47 250 -12 395 286 42 30 chr3 37581629 37581797 -189942781 - Charlie8 DNA MER1_type -4 2413 2244 478 266 20 79 chr3 37581858 37582061 -189942517 - Charlie8 DNA MER1_type -2141 276 86 712 334 66 60 chr3 37582112 37582840 -189941738 + L2 LINE L2 2063 2794 -520 437 322 95 33 chr3 37584163 37584697 -189939881 + L1ME4a LINE L1 5291 5884 -237 1363 222 9 19 chr3 37584706 37585021 -189939557 + AluJo SINE Alu 1 312 0 289 264 85 16 chr3 37585082 37585211 -189939367 + L1ME4a LINE L1 5970 6107 -14 337 188 0 31 chr3 37587168 37587232 -189937346 + L2 LINE L2 3207 3268 -4 25 51 0 0 chr3 37587516 37587555 -189937023 + AT_rich Low_complexity Low_complexity 1 39 0 303 248 50 69 chr3 37588892 37588993 -189935585 - L2 LINE L2 -1 3271 3173 1360 118 0 47 chr3 37589262 37589541 -189935037 + L1PA4 LINE L1 5887 6152 -3 6859 65 10 3 chr3 37589556 37590674 -189933904 + L1PA7 LINE L1 5017 6154 0 242 35 35 69 chr3 37591386 37591444 -189933134 + (TTTTA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr3 37592860 37592882 -189931696 + AT_rich Low_complexity Low_complexity 1 22 0 185 171 0 0 chr3 37593704 37593739 -189930839 - L2 LINE L2 -1 3312 3278 21 36 0 0 chr3 37594440 37594468 -189930110 + AT_rich Low_complexity Low_complexity 1 28 0 1173 235 0 0 chr3 37594861 37595078 -189929500 - MER58A DNA MER1_type -7 217 1 40 21 0 0 chr3 37595326 37595373 -189929205 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 37597006 37597028 -189927550 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 37597417 37597445 -189927133 + AT_rich Low_complexity Low_complexity 1 28 0 1124 289 43 20 chr3 37598588 37599055 -189925523 - MER90 LTR ERV1 -7 607 94 281 250 0 62 chr3 37599232 37599312 -189925266 - MIR SINE MIR -13 249 175 196 349 57 53 chr3 37599763 37600027 -189924551 + L2 LINE L2 2139 2403 -911 500 330 124 56 chr3 37602289 37602960 -189921618 + L2 LINE L2 2584 3272 0 22 0 0 0 chr3 37603471 37603493 -189921085 + AT_rich Low_complexity Low_complexity 1 22 0 203 272 216 56 chr3 37604682 37604844 -189919734 + MIR SINE MIR 8 195 -67 697 170 15 102 chr3 37604927 37605133 -189919445 + MER5A DNA MER1_type 1 188 -1 2398 123 27 0 chr3 37605208 37605573 -189919005 - THE1C LTR MaLR 0 375 1 10565 113 31 3 chr3 37605573 37607110 -189917468 - THE1C-int LTR MaLR 0 1580 1 2512 123 11 11 chr3 37607110 37607485 -189917093 - THE1C LTR MaLR 0 375 1 477 95 82 0 chr3 37607571 37607718 -189916860 + (TA)n Simple_repeat Simple_repeat 1 159 0 693 209 25 18 chr3 37608837 37609000 -189915578 + MER5B DNA MER1_type 8 171 -7 1894 160 3 3 chr3 37609158 37609458 -189915120 + AluSx SINE Alu 1 300 -12 9306 176 14 49 chr3 37610337 37613087 -189911491 - L1PB1 LINE L1 -1 6866 4256 1741 107 0 4 chr3 37613087 37613321 -189911257 - AluSc SINE Alu -76 233 1 9306 176 14 49 chr3 37613321 37613885 -189910693 - L1PB1 LINE L1 -2611 4256 3674 268 242 33 52 chr3 37613886 37614039 -189910539 - L1PB1 LINE L1 -6105 758 609 1267 285 47 15 chr3 37614066 37614595 -189909983 - L1PB1 LINE L1 -6312 551 6 198 0 0 0 chr3 37617094 37617116 -189907462 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr3 37617353 37617386 -189907192 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1354 325 117 24 chr3 37619373 37620132 -189904446 + L2 LINE L2 713 1542 -1772 826 240 77 40 chr3 37620154 37620504 -189904074 - L1ME3A LINE L1 0 6170 5808 33 43 0 0 chr3 37620504 37620551 -189904027 + AT_rich Low_complexity Low_complexity 1 47 0 193 194 50 0 chr3 37620555 37620715 -189903863 + (TA)n Simple_repeat Simple_repeat 1 168 0 24 0 0 0 chr3 37620726 37620750 -189903828 + AT_rich Low_complexity Low_complexity 1 24 0 221 158 58 0 chr3 37620756 37620876 -189903702 + (TA)n Simple_repeat Simple_repeat 1 127 0 1195 264 50 10 chr3 37620885 37621268 -189903310 - L1ME3A LINE L1 -399 5771 5374 356 161 65 21 chr3 37621311 37621404 -189903174 - L1MD1 LINE L1 0 6242 6146 995 251 79 30 chr3 37621404 37621874 -189902704 - L1ME3A LINE L1 -1342 4804 4312 21 0 0 0 chr3 37623034 37623055 -189901523 + AT_rich Low_complexity Low_complexity 1 21 0 1630 150 38 24 chr3 37624578 37624871 -189899707 + AluJo SINE Alu 1 297 -15 246 62 0 0 chr3 37624884 37624916 -189899662 + (CAA)n Simple_repeat Simple_repeat 2 33 0 31284 111 19 51 chr3 37625186 37631539 -189893039 - L1PA7 LINE L1 -11 6143 1 1894 168 0 16 chr3 37632386 37632702 -189891876 + AluSx SINE Alu 1 311 -1 365 255 113 9 chr3 37633455 37633561 -189891017 - L2 LINE L2 -2 3311 3195 395 214 0 0 chr3 37634296 37634366 -189890212 + MER5A DNA MER1_type 4 73 -116 603 182 0 66 chr3 37634367 37634488 -189890090 + FLAM_A SINE Alu 1 113 -29 298 276 229 0 chr3 37634523 37634628 -189889950 + MER5A DNA MER1_type 61 189 0 704 237 29 0 chr3 37634636 37634809 -189889769 - MER5B DNA MER1_type 0 178 1 210 37 0 0 chr3 37636344 37636371 -189888207 + (A)n Simple_repeat Simple_repeat 1 27 0 833 259 156 24 chr3 37637162 37637533 -189887045 - MLT1H LTR MaLR 0 549 130 202 250 40 66 chr3 37637660 37637736 -189886842 + MIR SINE MIR 117 190 -72 1270 198 116 74 chr3 37638081 37638192 -189886386 - MER31B LTR ERV1 0 485 380 2289 48 0 52 chr3 37638192 37638501 -189886077 + AluY SINE Alu 1 293 -18 1270 198 116 74 chr3 37638501 37638880 -189885698 - MER31B LTR ERV1 -105 380 1 1520 229 22 102 chr3 37639300 37639799 -189884779 + MLT2B1 LTR ERVL 2 460 -60 43240 39 28 2 chr3 37639805 37645735 -189878843 + L1PA4 LINE L1 1 6074 -81 299 312 98 34 chr3 37696620 37696825 -189827753 + MLT1J2 LTR MaLR 2 219 -231 433 241 86 52 chr3 37697679 37697908 -189826670 + L1MCa LINE L1 17 564 -5858 860 207 79 20 chr3 37697926 37698129 -189826449 + LTR32 LTR ERVL 15 229 -242 387 335 53 16 chr3 37699013 37699201 -189825377 + MIR SINE MIR 65 259 -3 186 43 0 0 chr3 37699840 37699863 -189824715 + (CA)n Simple_repeat Simple_repeat 2 24 0 440 333 42 0 chr3 37700294 37700414 -189824164 - MER91A DNA MER1_type -71 125 1 366 276 71 67 chr3 37701644 37701898 -189822680 - L1ME3A LINE L1 -1 6169 5915 1362 165 37 0 chr3 37702148 37702404 -189822174 - AluJb SINE Alu 0 321 58 1941 153 3 3 chr3 37702935 37703230 -189821348 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr3 37703230 37703253 -189821325 + (TA)n Simple_repeat Simple_repeat 1 23 0 45 0 0 0 chr3 37703253 37703298 -189821280 + AT_rich Low_complexity Low_complexity 1 45 0 323 255 0 43 chr3 37703308 37703402 -189821176 - L1MC4 LINE L1 -1339 6703 6614 198 236 0 0 chr3 37703403 37703458 -189821120 + (TA)n Simple_repeat Simple_repeat 1 55 0 272 291 24 31 chr3 37703601 37703728 -189820850 - L1MCc LINE L1 -6019 404 279 410 280 66 45 chr3 37703998 37704284 -189820294 + L1ME LINE L1 4288 4579 -1567 2280 69 0 29 chr3 37704592 37704898 -189819680 + AluY SINE Alu 1 297 -14 24 0 0 0 chr3 37705118 37705142 -189819436 + AT_rich Low_complexity Low_complexity 1 24 0 631 293 186 17 chr3 37705342 37705697 -189818881 + L1ME LINE L1 5389 5803 -318 385 328 75 36 chr3 37705702 37706010 -189818568 - MER102b DNA MER1_type 0 341 22 289 323 40 40 chr3 37706143 37706242 -189818336 + L2 LINE L2 3171 3269 -3 431 275 5 76 chr3 37706383 37706594 -189817984 - L2 LINE L2 0 3313 3118 1834 283 21 8 chr3 37706606 37707139 -189817439 - MER74B LTR ERVL -10 612 73 824 261 8 69 chr3 37707152 37707530 -189817048 - L2 LINE L2 -190 3123 2770 612 313 65 53 chr3 37707569 37708083 -189816495 + L1M4 LINE L1 3791 4310 -1836 484 310 73 57 chr3 37708202 37708570 -189816008 + L1M4 LINE L1 4525 4898 -1248 1602 174 43 46 chr3 37708575 37708948 -189815630 - THE1C LTR MaLR -3 372 1 367 311 81 48 chr3 37708955 37709164 -189815414 + L1M4 LINE L1 4918 5133 -1013 1788 201 37 3 chr3 37709623 37709971 -189814607 + MLT1A1 LTR MaLR 6 365 0 2028 42 118 4 chr3 37710004 37710266 -189814312 + AluY SINE Alu 1 292 -19 180 0 0 0 chr3 37710958 37710978 -189813600 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 71 0 0 chr3 37712729 37712771 -189811807 + AT_rich Low_complexity Low_complexity 1 42 0 240 159 45 0 chr3 37714780 37714844 -189809734 + AluYb8 SINE Alu 242 307 0 25 0 0 0 chr3 37716976 37717001 -189807577 + AT_rich Low_complexity Low_complexity 1 25 0 577 225 42 28 chr3 37718081 37718223 -189806355 + MIR SINE MIR 118 261 -1 211 242 41 0 chr3 37718810 37718872 -189805706 - MIR SINE MIR -67 141 88 234 0 0 0 chr3 37719910 37719936 -189804642 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 1830 127 0 57 chr3 37720110 37720441 -189804137 + L1PB1 LINE L1 5801 6112 -39 256 241 217 6 chr3 37720988 37721154 -189803424 - Charlie4 DNA MER1_type -3 1958 1758 825 223 41 0 chr3 37721172 37721369 -189803209 - Charlie4 DNA MER1_type -1723 238 34 309 318 44 61 chr3 37721446 37721876 -189802702 - L2 LINE L2 -195 3077 2655 261 234 76 94 chr3 37721966 37722137 -189802441 + MLT1H LTR MaLR 1 168 -381 322 373 77 26 chr3 37722436 37722970 -189801608 - L2 LINE L2 -773 2541 1981 28 48 0 0 chr3 37723976 37724018 -189800560 + AT_rich Low_complexity Low_complexity 1 42 0 826 211 164 14 chr3 37724018 37724298 -189800280 - MER5C DNA MER1_type -1 323 2 2358 100 0 0 chr3 37724314 37724625 -189799953 - AluY SINE Alu 0 311 1 895 264 98 14 chr3 37725490 37725961 -189798617 - MLT1G LTR MaLR -12 578 1 333 167 154 26 chr3 37725962 37726040 -189798538 + MER39 LTR ERV1 48 135 -572 * 1893 200 28 48 chr3 37726013 37726063 -189798515 + MER39 LTR ERV1 257 306 -401 2158 131 13 46 chr3 37726063 37726451 -189798127 + THE1C LTR MaLR 1 375 0 1893 200 28 48 chr3 37726451 37726860 -189797718 + MER39 LTR ERV1 306 707 0 294 297 230 7 chr3 37728080 37728228 -189796350 - MER5A DNA MER1_type 0 189 9 370 308 21 35 chr3 37729094 37729237 -189795341 + MIR SINE MIR 49 189 -73 281 178 0 0 chr3 37729664 37729709 -189794869 - 5S rRNA rRNA -76 45 1 347 302 0 0 chr3 37729741 37729827 -189794751 + L2 LINE L2 3228 3313 0 217 355 19 28 chr3 37729899 37730006 -189794572 - MER5B DNA MER1_type -72 106 1 4131 139 28 12 chr3 37730179 37730920 -189793658 - L1MA4 LINE L1 -2 6298 5546 276 240 50 60 chr3 37732056 37732156 -189792422 - MER102b DNA MER1_type -11 330 232 243 125 0 0 chr3 37732266 37732306 -189792272 + (TTA)n Simple_repeat Simple_repeat 3 42 0 297 326 30 0 chr3 37732605 37732737 -189791841 - HAL1b LINE L1 -743 605 470 559 185 11 0 chr3 37732833 37732925 -189791653 + AluJ/FLAM SINE Alu 7 99 -213 324 70 0 0 chr3 37733044 37733087 -189791491 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 1943 148 10 3 chr3 37733423 37733727 -189790851 - AluSx SINE Alu -6 306 1 213 211 184 70 chr3 37734494 37734608 -189789970 + MIR3 SINE MIR 1 127 -81 2267 93 0 0 chr3 37734916 37735205 -189789373 - AluY SINE Alu -12 299 11 5941 93 30 67 chr3 37735217 37736229 -189788349 - L1PA10 LINE L1 0 6168 5223 2120 134 0 0 chr3 37736229 37736528 -189788050 + AluSx SINE Alu 1 299 -13 5941 93 30 67 chr3 37736528 37737312 -189787266 - L1PA10 LINE L1 -945 5223 4412 9823 155 16 3 chr3 37737314 37739040 -189785538 + L1PA10 LINE L1 2695 4442 -1704 21 0 0 0 chr3 37739293 37739314 -189785264 + AT_rich Low_complexity Low_complexity 1 21 0 578 274 116 31 chr3 37741753 37742210 -189782368 - HAL1 LINE L1 -3 2504 1991 370 199 241 7 chr3 37742345 37742486 -189782092 + L1ME3A LINE L1 5259 5432 -730 429 288 59 0 chr3 37742659 37742829 -189781749 + L1ME3A LINE L1 5681 5860 -310 1394 192 11 49 chr3 37745494 37745843 -189778735 - MLT1B LTR MaLR -21 369 34 35126 47 4 45 chr3 37745847 37746511 -189778067 + L1P LINE L1 3 693 -5453 627 221 7 7 chr3 37746511 37746651 -189777927 - MLT1B LTR MaLR -21 369 230 35126 47 4 45 chr3 37746651 37750838 -189773740 + L1P LINE L1 693 4789 -1357 7414 31 0 0 chr3 37750938 37751818 -189772760 + L1PA4 LINE L1 5276 6155 0 519 72 91 6 chr3 37752049 37752388 -189772190 + (TA)n Simple_repeat Simple_repeat 1 367 0 33 25 0 0 chr3 37752495 37752535 -189772043 + AT_rich Low_complexity Low_complexity 1 40 0 336 296 32 0 chr3 37752816 37752941 -189771637 - L2 LINE L2 -258 3055 2927 223 277 62 36 chr3 37753095 37753207 -189771371 - L2 LINE L2 -182 3090 2976 1888 149 35 51 chr3 37753306 37753676 -189770902 - THE1B LTR MaLR 0 364 1 11626 100 3 1 chr3 37753676 37755252 -189769326 - THE1B-int LTR MaLR 0 1580 1 2079 113 38 57 chr3 37755252 37755623 -189768955 - THE1B LTR MaLR 0 364 1 870 179 68 133 chr3 37756925 37757324 -189767254 - MLT1A2 LTR MaLR 0 426 1 5921 99 4 21 chr3 37759225 37759334 -189765244 + L1PA14 LINE L1 5223 5332 -829 2238 99 3 0 chr3 37759334 37759628 -189764950 + AluY SINE Alu 1 295 -16 5921 99 4 21 chr3 37759628 37760470 -189764108 + L1PA14 LINE L1 5332 6159 -2 249 119 0 0 chr3 37763036 37763078 -189761500 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 223 318 106 12 chr3 37763080 37763165 -189761413 - L2 LINE L2 -31 3241 3149 1781 216 63 44 chr3 37763362 37763949 -189760629 + L1ME1 LINE L1 5564 6161 -5 1117 178 190 26 chr3 37764703 37764972 -189759606 + MLT1D LTR MaLR 193 505 0 403 269 60 107 chr3 37765200 37765498 -189759080 + L2 LINE L2 3029 3312 -1 270 194 0 0 chr3 37766237 37766299 -189758279 + (CA)n Simple_repeat Simple_repeat 1 62 0 727 252 128 8 chr3 37766299 37766549 -189758029 + LTR16C LTR ERVL 141 420 -71 527 223 44 118 chr3 37766701 37767025 -189757553 - LTR25-int LTR ERV1 -984 4233 741 322 186 107 125 chr3 37767064 37767278 -189757300 - LTR25-int LTR ERV1 -2325 763 282 293 245 39 20 chr3 37767488 37767590 -189756988 - LTR25-int LTR ERV1 -6462 534 431 2422 130 162 2 chr3 37767812 37768244 -189756334 - MER61D LTR ERV1 0 501 1 683 109 21 0 chr3 37768246 37768373 -189756205 - L1M2 LINE L1 -721 5447 5317 420 340 162 20 chr3 37768574 37769030 -189755548 - LTR33 LTR ERVL -2 521 1 242 200 0 0 chr3 37769872 37769912 -189754666 + L3 LINE CR1 1530 1569 -8 2014 47 8 4 chr3 37769954 37770208 -189754370 + L1PA6 LINE L1 5900 6154 0 240 184 0 0 chr3 37770287 37770336 -189754242 + CT-rich Low_complexity Low_complexity 4 52 0 3773 126 30 75 chr3 37770346 37771069 -189753509 - LTR8 LTR ERV1 0 691 1 1275 255 103 11 chr3 37771076 37771328 -189753250 - MLT1G1 LTR MaLR -179 416 116 3077 189 45 32 chr3 37771328 37772046 -189752532 + LTR8A LTR ERV1 1 727 0 1275 255 103 11 chr3 37772046 37772173 -189752405 - MLT1G1 LTR MaLR -479 116 2 23 0 0 0 chr3 37772509 37772532 -189752046 + AT_rich Low_complexity Low_complexity 1 23 0 321 288 118 20 chr3 37773210 37773363 -189751215 - MLT1H LTR MaLR -315 234 67 1598 187 45 84 chr3 37773506 37773972 -189750606 + MLT1C LTR MaLR 6 453 -14 246 299 118 16 chr3 37774619 37774746 -189749832 + L2 LINE L2 2916 3055 -217 2293 125 30 22 chr3 37775320 37775681 -189748897 - THE1B LTR MaLR 0 364 1 645 265 40 26 chr3 37775904 37776325 -189748253 + MLT1G1 LTR MaLR 113 573 -22 945 241 18 18 chr3 37776749 37776973 -189747605 + MER58A DNA MER1_type 1 224 0 4375 74 35 8 chr3 37777218 37777810 -189746768 - LTR14B LTR ERVK 0 608 1 487 315 38 5 chr3 37777978 37778162 -189746416 - MLT1K LTR MaLR -248 340 151 747 168 31 42 chr3 37778278 37778469 -189746109 - MER53 DNA DNA 0 189 1 1698 189 16 7 chr3 37778802 37779108 -189745470 + AluSx SINE Alu 1 309 -3 6805 128 11 7 chr3 37779275 37780170 -189744408 - L1MA2 LINE L1 0 6304 5397 2319 138 5 27 chr3 37780170 37780541 -189744037 + THE1B LTR MaLR 2 364 0 6805 128 11 7 chr3 37780541 37781107 -189743471 - L1MA2 LINE L1 -907 5397 4835 317 285 79 30 chr3 37781787 37781952 -189742626 + MIR SINE MIR 63 235 -27 451 344 184 23 chr3 37781984 37782257 -189742321 - HAL1 LINE L1 -1602 905 677 2286 227 87 62 chr3 37782257 37783063 -189741515 + LTR1B LTR ERV1 1 826 0 451 344 184 23 chr3 37783063 37783274 -189741304 - HAL1 LINE L1 -1830 677 343 685 276 43 87 chr3 37783323 37783881 -189740697 + MLT1G LTR MaLR 20 595 0 260 326 49 28 chr3 37783957 37784101 -189740477 + MIR SINE MIR 60 206 -56 1014 198 11 0 chr3 37784952 37785139 -189739439 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr3 37785330 37785352 -189739226 + AT_rich Low_complexity Low_complexity 1 22 0 919 105 7 13 chr3 37785713 37785865 -189738713 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 265 267 40 40 chr3 37786127 37786228 -189738350 + L2 LINE L2 2108 2208 -1106 425 289 182 11 chr3 37786333 37786520 -189738058 + MIR SINE MIR 44 262 0 211 254 48 0 chr3 37787028 37787091 -189737487 + MIR SINE MIR 139 204 -58 270 0 0 0 chr3 37788362 37788392 -189736186 + (CA)n Simple_repeat Simple_repeat 2 31 0 978 313 63 24 chr3 37788525 37788950 -189735628 - LTR16C LTR ERVL 0 491 50 3180 259 81 24 chr3 37789093 37790457 -189734121 + L1M4 LINE L1 3504 4944 -1202 299 304 28 31 chr3 37790738 37790937 -189733641 + MIR SINE MIR 2 171 -91 362 335 99 12 chr3 37792101 37792262 -189732316 + MLT2E LTR ERVL 34 208 -420 243 165 110 88 chr3 37792473 37792511 -189732067 + LTR33A LTR ERVL 431 467 -56 3953 176 93 5 chr3 37792511 37793123 -189731455 - MER6 DNA MER2_type 0 865 308 357 24 0 0 chr3 37793123 37793165 -189731413 + (CA)n Simple_repeat Simple_repeat 2 43 0 294 29 0 0 chr3 37793166 37793201 -189731377 + (TC)n Simple_repeat Simple_repeat 1 35 0 3953 176 93 5 chr3 37793201 37793381 -189731197 - MER6 DNA MER2_type -556 309 1 243 165 110 88 chr3 37793381 37793433 -189731145 + LTR33A LTR ERVL 467 523 0 268 224 0 0 chr3 37793786 37793835 -189730743 - MER6 DNA MER2_type -761 104 56 568 328 64 0 chr3 37794219 37794390 -189730188 + MIR SINE MIR 5 186 -76 2316 90 0 19 chr3 37794699 37795009 -189729569 + AluSx SINE Alu 1 304 -8 279 325 12 0 chr3 37795111 37795194 -189729384 - MER5A DNA MER1_type -104 85 2 606 271 93 29 chr3 37796435 37796569 -189728009 + LTR33 LTR ERVL 3 127 -394 2378 166 21 33 chr3 37796569 37796997 -189727581 + MSTB LTR MaLR 4 426 0 606 271 93 29 chr3 37796997 37797238 -189727340 + LTR33 LTR ERVL 127 427 -94 21 0 0 0 chr3 37797484 37797505 -189727073 + AT_rich Low_complexity Low_complexity 1 21 0 1875 180 21 12 chr3 37797579 37797913 -189726665 + MER1B DNA MER1_type 1 337 0 1593 162 84 36 chr3 37798078 37798436 -189726142 - THE1C LTR MaLR 0 375 1 2999 121 8 14 chr3 37798436 37798925 -189725653 - THE1C-int LTR MaLR 0 1580 1095 9994 109 18 3 chr3 37798942 37800551 -189724027 - L1P LINE L1 -1687 4459 2827 6651 85 7 0 chr3 37800551 37802051 -189722527 + L1PA8 LINE L1 4662 6166 -6 521 299 224 14 chr3 37802400 37802694 -189721884 - L2 LINE L2 -4 3309 2954 211 282 14 0 chr3 37802694 37802765 -189721813 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 216 341 40 62 chr3 37803554 37803780 -189720798 + L2 LINE L2 1876 2096 -1218 248 362 43 6 chr3 37804338 37804501 -189720077 + L2 LINE L2 2338 2506 -808 1062 208 59 87 chr3 37805002 37805391 -189719187 - LTR40b LTR ERVL -84 378 1 417 189 0 0 chr3 37805391 37805465 -189719113 + LTR16C LTR ERVL 416 489 -2 290 230 40 0 chr3 37806367 37806441 -189718137 + CT-rich Low_complexity Low_complexity 4 80 0 22 56 0 0 chr3 37806747 37806783 -189717795 + AT_rich Low_complexity Low_complexity 1 36 0 476 311 44 32 chr3 37806864 37807112 -189717466 - MIR SINE MIR 0 262 12 965 233 100 29 chr3 37807647 37807926 -189716652 + AluJb SINE Alu 2 300 -2 351 274 0 51 chr3 37808076 37808193 -189716385 - L1MC4 LINE L1 -1318 6724 6614 320 330 0 0 chr3 37808107 37808204 -189716374 + L1MC4 LINE L1 6614 6710 -1332 * 24 0 0 0 chr3 37808614 37808638 -189715940 + AT_rich Low_complexity Low_complexity 1 24 0 317 211 41 32 chr3 37808638 37808761 -189715817 - L1MA9 LINE L1 -22 6290 6167 3497 74 13 13 chr3 37809030 37809488 -189715090 + LTR22A LTR ERVK 1 458 0 549 277 28 5 chr3 37809521 37809734 -189714844 - L1MC4 LINE L1 -2000 5808 5591 1844 170 19 19 chr3 37810873 37811185 -189713393 - AluJo SINE Alu 0 312 1 1261 153 65 47 chr3 37811656 37811822 -189712756 - LTR36 LTR ERV1 0 611 449 2572 73 0 3 chr3 37811822 37812136 -189712442 - AluSp SINE Alu 0 313 1 1261 153 65 47 chr3 37812136 37812511 -189712067 - LTR36 LTR ERV1 -162 449 11 5245 97 21 9 chr3 37812511 37813281 -189711297 + MER4E LTR ERV1 1 779 0 1261 153 65 47 chr3 37813281 37813293 -189711285 - LTR36 LTR ERV1 -600 11 1 4106 100 3 102 chr3 37813658 37814395 -189710183 + MER4A LTR ERV1 1 664 0 339 127 0 18 chr3 37814537 37814592 -189709986 + AluSc SINE Alu 105 158 -141 230 232 37 0 chr3 37815734 37815816 -189708762 + (TA)n Simple_repeat Simple_repeat 2 86 0 1211 177 33 46 chr3 37816308 37816623 -189707955 + MLT1B LTR MaLR 1 226 -164 1570 222 19 19 chr3 37816623 37816988 -189707590 - MLT1A1 LTR MaLR 0 365 1 1211 177 33 46 chr3 37816988 37817149 -189707429 + MLT1B LTR MaLR 226 388 -2 1800 135 0 0 chr3 37817172 37817439 -189707139 - AluSx SINE Alu 0 306 40 740 221 6 18 chr3 37817466 37817629 -189706949 + MER20 DNA MER1_type 2 162 -57 284 226 0 0 chr3 37817671 37817724 -189706854 + MER20 DNA MER1_type 167 219 0 2054 152 0 0 chr3 37818110 37818407 -189706171 + AluSx SINE Alu 1 297 -15 399 316 63 42 chr3 37819781 37820285 -189704293 + L1MEc LINE L1 338 852 -5544 526 234 262 0 chr3 37820287 37820501 -189704077 + SATR1 Satellite Satellite 200 469 -1 928 249 186 54 chr3 37820533 37821441 -189703137 + SATR1 Satellite Satellite 1 1027 -1 1098 198 271 17 chr3 37821616 37822136 -189702442 + SATR1 Satellite Satellite 1 651 -1 820 209 309 6 chr3 37822221 37822641 -189701937 + SATR1 Satellite Satellite 1 547 -247 * 1337 183 53 0 chr3 37822635 37822897 -189701681 + Tigger3(Golem) DNA MER2_type 2753 3028 -1 1167 163 54 17 chr3 37822899 37823126 -189701452 - Tigger2 DNA MER2_type 0 2718 2480 549 209 14 65 chr3 37823126 37823265 -189701313 + FLAM_C SINE Alu 2 133 0 1167 163 54 17 chr3 37823265 37823277 -189701301 - Tigger2 DNA MER2_type -238 2480 2470 2239 99 0 0 chr3 37826145 37826476 -189698102 + AluSx SINE Alu 1 331 0 312 256 77 34 chr3 37827146 37827263 -189697315 + MER96B DNA MER1_type? 296 417 0 431 300 147 0 chr3 37827603 37827753 -189696825 + MER5A DNA MER1_type 12 183 -6 26 0 0 0 chr3 37827777 37827803 -189696775 + AT_rich Low_complexity Low_complexity 1 26 0 4257 127 6 51 chr3 37827808 37828532 -189696046 + LTR8 LTR ERV1 1 691 0 23 68 0 0 chr3 37828553 37828597 -189695981 + AT_rich Low_complexity Low_complexity 1 44 0 2372 71 0 20 chr3 37828877 37829173 -189695405 - AluSc SINE Alu -19 290 1 223 231 31 0 chr3 37829562 37829627 -189694951 + CT-rich Low_complexity Low_complexity 2 68 0 321 250 103 9 chr3 37830254 37830370 -189694208 + MIR SINE MIR 74 200 -62 2053 210 37 16 chr3 37830386 37830900 -189693678 - MER34 LTR ERV1 -10 532 8 216 0 0 0 chr3 37831116 37831140 -189693438 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 457 235 77 104 chr3 37831290 37831473 -189693105 - MER5B DNA MER1_type 0 178 1 429 290 9 3 chr3 37831790 37831973 -189692605 + L1MC4a LINE L1 6450 6577 -1231 534 199 233 98 chr3 37831986 37832264 -189692314 + MSTD LTR MaLR 3 339 -57 359 131 12 24 chr3 37832264 37832348 -189692230 - L1PB1 LINE L1 -3 6148 6066 534 199 233 98 chr3 37832348 37832416 -189692162 + MSTD LTR MaLR 339 396 0 2195 232 263 18 chr3 37832463 37833442 -189691136 + L1MC4 LINE L1 6686 7903 -139 275 250 190 20 chr3 37833928 37834028 -189690550 + L2 LINE L2 3195 3311 -2 257 298 42 83 chr3 37834342 37834510 -189690068 + MIR3 SINE MIR 46 206 -2 619 297 45 32 chr3 37835121 37835367 -189689211 - LTR16C LTR ERVL -11 480 232 922 277 104 14 chr3 37835375 37835729 -189688849 + MLT1G1 LTR MaLR 11 396 -199 7036 47 1 0 chr3 37835731 37836627 -189687951 - L1PA5 LINE L1 -4 6150 5254 2953 31 0 5 chr3 37836630 37837011 -189687567 + L1PA5 LINE L1 4851 5229 -917 639 273 23 27 chr3 37837015 37837235 -189687343 + MLT1G1 LTR MaLR 372 590 0 1408 158 0 5 chr3 37838299 37838508 -189686070 - AluJb SINE Alu -104 208 1 1161 216 127 60 chr3 37838851 37839332 -189685246 - LTR1B LTR ERV1 0 826 314 767 160 47 12 chr3 37841336 37841505 -189683073 - L1MB1 LINE L1 -13 6155 5981 2125 172 42 29 chr3 37841518 37841713 -189682865 - L1MA10 LINE L1 -4 6330 6139 2403 69 0 3 chr3 37841713 37842017 -189682561 - AluY SINE Alu -8 303 1 2125 172 42 29 chr3 37842017 37842298 -189682280 - L1MA10 LINE L1 -195 6139 5848 2156 202 8 38 chr3 37842298 37842788 -189681790 - MER61-int LTR ERV1 -494 4723 4247 834 215 72 65 chr3 37842964 37843285 -189681293 - L1ME3A LINE L1 -4 6166 5844 420 240 31 23 chr3 37844064 37844193 -189680385 + MIR SINE MIR 133 262 0 298 248 113 57 chr3 37844364 37844505 -189680073 + MIR SINE MIR 86 234 -28 2359 107 0 0 chr3 37845068 37845378 -189679200 - AluSg SINE Alu 0 310 1 1552 199 59 17 chr3 37845513 37845869 -189678709 - MER31B LTR ERV1 -95 371 1 6325 134 44 13 chr3 37847583 37848665 -189675913 + Tigger3b DNA MER2_type 116 1231 0 219 286 71 0 chr3 37848701 37848771 -189675807 - MIR3 SINE MIR -15 193 119 254 232 43 14 chr3 37848857 37848926 -189675652 + C-rich Low_complexity Low_complexity 4 74 0 386 145 0 12 chr3 37848931 37849014 -189675564 + (TC)n Simple_repeat Simple_repeat 1 82 0 300 354 39 0 chr3 37849032 37849162 -189675416 + MIR3 SINE MIR 32 166 -42 396 292 59 19 chr3 37849182 37849370 -189675208 + MLT1J2 LTR MaLR 20 213 -233 209 245 75 0 chr3 37849631 37849684 -189674894 - L2 LINE L2 -2 3311 3255 587 210 96 19 chr3 37851027 37851184 -189673394 + MIR SINE MIR 89 257 -5 336 232 43 114 chr3 37851449 37851660 -189672918 + MLT1K LTR MaLR 378 573 -15 286 237 13 13 chr3 37851759 37851835 -189672743 + GA-rich Low_complexity Low_complexity 1 76 0 379 290 62 26 chr3 37852069 37852262 -189672316 - L3 LINE CR1 -180 1397 1198 2577 247 48 9 chr3 37853190 37853920 -189670658 + L1ME1 LINE L1 5400 6154 -12 228 324 10 20 chr3 37854203 37854305 -189670273 - MLT1J LTR MaLR -374 175 75 307 237 21 54 chr3 37855977 37856070 -189668508 + MER5A DNA MER1_type 74 163 -26 202 289 96 0 chr3 37858504 37858587 -189665991 + L2 LINE L2 3214 3304 -9 234 340 31 21 chr3 37858667 37858764 -189665814 - MIR SINE MIR -65 143 46 375 157 74 66 chr3 37859465 37859586 -189664992 - LTR37B LTR ERV1 -4 464 343 322 260 21 0 chr3 37859664 37859760 -189664818 - LTR37B LTR ERV1 -167 301 204 223 137 0 83 chr3 37859872 37860040 -189664538 + (TA)n Simple_repeat Simple_repeat 2 155 0 359 124 5 77 chr3 37860114 37860308 -189664270 + (TA)n Simple_repeat Simple_repeat 1 180 0 342 67 0 0 chr3 37861018 37861063 -189663515 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 289 21 10 chr3 37861865 37861962 -189662616 - MLT1J LTR MaLR -413 98 1 686 139 8 33 chr3 37861991 37862113 -189662465 - FRAM SINE Alu -26 150 32 383 333 39 39 chr3 37862151 37862385 -189662193 - MIR SINE MIR -16 246 13 1796 210 42 2 chr3 37862601 37863001 -189661577 + MER63C DNA MER1_type 87 502 -428 650 290 27 27 chr3 37863011 37863235 -189661343 + MER58A DNA MER1_type 1 224 0 1044 199 74 52 chr3 37865016 37865287 -189659291 - MLT1B LTR MaLR -110 280 4 242 200 0 129 chr3 37865862 37865932 -189658646 + L2 LINE L2 3250 3310 -3 560 260 106 34 chr3 37866119 37866561 -189658017 - HAL1b LINE L1 -249 1099 626 415 283 71 90 chr3 37866831 37867153 -189657425 - HAL1b LINE L1 -1026 322 7 836 267 37 64 chr3 37867363 37867686 -189656892 + MER21B LTR ERV1 332 645 -218 1977 200 41 91 chr3 37867686 37868245 -189656333 - LTR26E LTR ERV1 0 622 1 559 269 42 6 chr3 37868245 37868410 -189656168 + MER21B LTR ERV1 642 812 -51 2095 184 68 42 chr3 37869529 37869985 -189654593 + MLT1D LTR MaLR 38 505 0 388 275 127 48 chr3 37872419 37872859 -189651719 - MLT1K LTR MaLR -1 475 1 721 269 77 27 chr3 37872879 37873125 -189651453 + MLT1D LTR MaLR 2 260 -245 244 209 128 35 chr3 37873125 37873211 -189651367 - MER34 LTR ERV1 0 542 449 73 57 0 0 chr3 37873261 37873383 -189651195 + AT_rich Low_complexity Low_complexity 1 122 0 927 233 43 0 chr3 37874787 37874997 -189649581 + MER20 DNA MER1_type 1 219 0 265 114 0 0 chr3 37875458 37875493 -189649085 - U2 snRNA snRNA -153 35 1 181 368 75 19 chr3 37875528 37875634 -189648944 - MIR SINE MIR -81 127 16 2025 253 66 12 chr3 37875829 37876390 -189648188 + MLT1G1 LTR MaLR 5 595 0 2026 125 3 30 chr3 37876723 37877028 -189647550 + AluSx SINE Alu 1 297 -15 765 281 88 24 chr3 37877748 37878779 -189645799 + L1ME3A LINE L1 4758 5852 -318 38 0 0 0 chr3 37879963 37880001 -189644577 + AT_rich Low_complexity Low_complexity 1 38 0 767 277 59 84 chr3 37880786 37881227 -189643351 - MER110 LTR ERV1 0 468 80 29 0 0 0 chr3 37881598 37881627 -189642951 + AT_rich Low_complexity Low_complexity 1 29 0 216 293 35 0 chr3 37881829 37881887 -189642691 + MIR SINE MIR 203 262 0 226 314 0 0 chr3 37881950 37882001 -189642577 + L2 LINE L2 3212 3262 -10 263 257 0 0 chr3 37883648 37883718 -189640860 + MLT1J LTR MaLR 111 180 -331 2276 104 0 19 chr3 37884494 37884810 -189639768 + AluSg SINE Alu 1 310 0 234 333 72 0 chr3 37885053 37885164 -189639414 + MIR SINE MIR 84 202 -60 192 320 67 13 chr3 37886751 37886826 -189637752 - MIR3 SINE MIR -5 203 125 189 0 0 0 chr3 37887341 37887362 -189637216 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7044 58 8 3 chr3 37887619 37888522 -189636056 - L1PA8 LINE L1 0 6172 5266 4053 97 0 0 chr3 37888520 37889105 -189635473 + L1PA8 LINE L1 4673 5257 -889 * 22 0 0 0 chr3 37889106 37889128 -189635450 + AT_rich Low_complexity Low_complexity 1 22 0 192 309 126 97 chr3 37889543 37889812 -189634766 + L2 LINE L2 2615 2891 -423 1897 161 58 3 chr3 37890365 37890695 -189633883 + MSTC LTR MaLR 81 428 0 343 229 0 0 chr3 37890807 37890868 -189633710 + Tigger2 DNA MER2_type 1 61 -2657 239 191 103 73 chr3 37890877 37890945 -189633633 - MER2 DNA MER2_type 0 345 276 * 735 244 54 6 chr3 37890912 37891080 -189633498 - MER8 DNA MER2_type -63 176 1 210 239 0 0 chr3 37891260 37891306 -189633272 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 235 370 33 11 chr3 37891946 37892038 -189632540 - L3 LINE CR1 -104 1473 1380 4344 259 67 31 chr3 37892946 37895957 -189628621 + L1ME1 LINE L1 35 2936 -3299 1549 179 7 33 chr3 37895957 37896258 -189628320 + AluJb SINE Alu 6 298 -14 4344 259 67 31 chr3 37896258 37897193 -189627385 + L1ME1 LINE L1 2936 6187 -48 345 254 26 9 chr3 37897125 37897239 -189627339 + L1MA10 LINE L1 6280 6395 -8 * 216 152 45 0 chr3 37897989 37898055 -189626523 + (TA)n Simple_repeat Simple_repeat 2 70 0 571 196 77 36 chr3 37898303 37898497 -189626081 + L1ME3A LINE L1 5753 5954 -216 301 261 176 17 chr3 37898833 37898952 -189625626 + AluJb SINE Alu 2 139 -163 908 160 0 101 chr3 37899119 37899338 -189625240 + L1MA9 LINE L1 6078 6274 -38 300 309 39 11 chr3 37899388 37899566 -189625012 - L1ME LINE L1 -337 5784 5602 253 317 92 17 chr3 37899605 37899725 -189624853 - L1ME LINE L1 -2226 5582 5454 264 213 223 11 chr3 37899732 37899826 -189624752 + L2 LINE L2 3195 3308 -5 22 0 0 0 chr3 37899970 37899992 -189624586 + AT_rich Low_complexity Low_complexity 1 22 0 5426 34 0 0 chr3 37900011 37900650 -189623928 - L1PA5 LINE L1 -2 6152 5514 23367 78 9 0 chr3 37900650 37903745 -189620833 - L1P LINE L1 -3024 3122 1 272 377 97 39 chr3 37904881 37905411 -189619167 + L2 LINE L2 2354 2924 -390 1982 125 3 21 chr3 37905411 37905735 -189618843 - AluSx SINE Alu 0 319 1 272 377 97 39 chr3 37905735 37905792 -189618786 + L2 LINE L2 2924 2976 -338 397 212 124 44 chr3 37906197 37906310 -189618268 + MIR SINE MIR 43 164 -98 216 214 0 0 chr3 37906373 37906415 -189618163 + (TA)n Simple_repeat Simple_repeat 2 43 0 377 302 65 12 chr3 37906472 37906641 -189617937 - MLT1J LTR MaLR -317 194 17 359 287 30 0 chr3 37906647 37906748 -189617830 + MIR SINE MIR 159 262 0 320 339 8 24 chr3 37906730 37906854 -189617724 - MIR SINE MIR -101 161 40 * 1291 247 69 45 chr3 37907283 37907732 -189616846 + MLT1C LTR MaLR 8 467 0 202 403 67 8 chr3 37908630 37908764 -189615814 - L2 LINE L2 -2 3270 3129 23 97 0 0 chr3 37909349 37909421 -189615157 + AT_rich Low_complexity Low_complexity 1 72 0 14373 134 35 3 chr3 37909575 37911916 -189612662 - Tigger1 DNA MER2_type -2 2416 1 257 236 94 4 chr3 37913028 37913116 -189611462 + MIR SINE MIR 50 143 -65 207 0 0 0 chr3 37913458 37913481 -189611097 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 181 214 60 128 chr3 37913651 37913768 -189610810 + MIR SINE MIR 146 254 -8 231 309 74 78 chr3 37914956 37915199 -189609379 - L3b LINE CR1 -222 1361 1120 1416 183 0 37 chr3 37915679 37915976 -189608602 + AluJo SINE Alu 21 307 0 22 0 0 0 chr3 37916568 37916590 -189607988 + AT_rich Low_complexity Low_complexity 1 22 0 25 46 0 46 chr3 37916729 37916767 -189607811 + AT_rich Low_complexity Low_complexity 1 37 -25 2180 107 0 0 chr3 37916767 37917071 -189607507 - AluSg SINE Alu 0 304 1 25 46 0 46 chr3 37917071 37917096 -189607482 + AT_rich Low_complexity Low_complexity 37 62 0 21 0 0 0 chr3 37917580 37917601 -189606977 + AT_rich Low_complexity Low_complexity 1 21 0 309 259 35 0 chr3 37918086 37918171 -189606407 - L2 LINE L2 -2 3270 3183 2158 153 14 0 chr3 37919603 37919969 -189604609 - THE1C LTR MaLR -4 371 1 374 253 199 7 chr3 37920097 37920243 -189604335 + MER5A DNA MER1_type 14 187 -2 1336 222 65 16 chr3 37920372 37920755 -189603823 - Charlie4a DNA MER1_type -101 407 6 242 231 0 0 chr3 37921335 37921387 -189603191 + L2 LINE L2 3261 3312 -1 255 255 21 21 chr3 37922277 37922371 -189602207 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 386 207 42 136 chr3 37922403 37922616 -189601962 + L1MEd LINE L1 789 981 -5138 25 31 0 0 chr3 37922647 37922679 -189601899 + AT_rich Low_complexity Low_complexity 1 32 0 463 325 81 4 chr3 37922752 37923111 -189601467 + L1ME3 LINE L1 5255 5639 -525 476 288 164 31 chr3 37923117 37923343 -189601235 + MIR SINE MIR 3 258 -4 442 260 34 25 chr3 37923402 37923573 -189601005 + L1ME3 LINE L1 5655 5829 -333 725 250 0 13 chr3 37923595 37923751 -189600827 + MER58A DNA MER1_type 45 198 -26 47 44 0 0 chr3 37923764 37923832 -189600746 + AT_rich Low_complexity Low_complexity 1 68 0 557 261 81 19 chr3 37924051 37924212 -189600366 + MER5B DNA MER1_type 8 178 0 6417 154 16 14 chr3 37924457 37926328 -189598250 - L1MA2 LINE L1 0 6304 4432 3940 245 88 39 chr3 37926314 37927796 -189596782 - L1M4 LINE L1 -4974 1568 15 * 306 132 0 19 chr3 37928658 37928711 -189595867 + L2 LINE L2 3262 3313 0 2273 170 67 0 chr3 37930520 37930921 -189593657 + MSTA LTR MaLR 1 428 0 257 342 57 36 chr3 37931020 37931213 -189593365 + MER117 DNA MER1_type 1 197 0 7608 22 7 0 chr3 37931781 37932900 -189591678 + L1PA2 LINE L1 5030 6155 0 21 57 0 0 chr3 37932900 37932935 -189591643 + AT_rich Low_complexity Low_complexity 1 35 0 384 125 0 0 chr3 37933586 37933650 -189590928 + (TTCCC)n Simple_repeat Simple_repeat 3 66 0 271 150 20 150 chr3 37934282 37934382 -189590196 + MLT1H LTR MaLR 3 89 -460 348 273 10 0 chr3 37934587 37934686 -189589892 + MLT1H LTR MaLR 450 549 0 416 96 32 11 chr3 37935310 37935404 -189589174 + (TA)n Simple_repeat Simple_repeat 2 97 0 1416 173 22 29 chr3 37936174 37936446 -189588132 + AluJo SINE Alu 39 308 -4 786 276 43 83 chr3 37936555 37936953 -189587625 + LTR16B LTR ERVL 83 464 0 183 379 10 0 chr3 37936958 37937061 -189587517 - L2 LINE L2 -1027 2287 2184 799 237 131 0 chr3 37937868 37938066 -189586512 - MER58A DNA MER1_type 0 224 1 809 144 75 0 chr3 37939033 37939206 -189585372 + MER53 DNA DNA 3 188 -1 466 271 97 7 chr3 37939309 37939453 -189585125 - MLT1J2 LTR MaLR -7 443 287 1902 291 107 81 chr3 37939666 37941163 -189583415 - L2 LINE L2 -37 3276 1751 250 400 84 13 chr3 37941208 37941363 -189583215 - L2 LINE L2 -1 3271 3106 859 212 41 0 chr3 37941714 37941884 -189582694 + MER5A DNA MER1_type 10 186 -3 2637 163 42 12 chr3 37942216 37942714 -189581864 - L1PA16 LINE L1 -16 6150 5638 3339 122 8 2 chr3 37942716 37943218 -189581360 + L1PA14 LINE L1 5656 6160 -1 2140 99 0 10 chr3 37943217 37943529 -189581049 - L1PA16 LINE L1 -501 5665 5357 * 346 255 186 12 chr3 37944138 37944299 -189580279 - MIR SINE MIR 0 262 74 1885 115 82 75 chr3 37944915 37945342 -189579236 - MSTB1 LTR MaLR -2 430 1 235 282 235 0 chr3 37945343 37945428 -189579150 + MIR SINE MIR 110 214 -48 598 292 53 4 chr3 37945609 37945852 -189578726 - MIR SINE MIR -3 259 5 263 344 94 6 chr3 37946927 37947087 -189577491 - MIR SINE MIR -60 202 29 359 211 133 34 chr3 37947126 37947231 -189577347 + MER5A DNA MER1_type 4 134 -55 1591 191 13 20 chr3 37947231 37947530 -189577048 - AluJo SINE Alu -8 304 8 359 211 133 34 chr3 37947530 37947581 -189576997 + MER5A DNA MER1_type 134 179 -10 238 258 0 45 chr3 37948765 37948831 -189575747 - LTR50 LTR ERVL -346 449 387 2214 171 10 10 chr3 37949315 37949718 -189574860 - MER57A LTR ERV1 0 403 1 279 246 57 57 chr3 37949845 37949967 -189574611 + MER112 DNA MER1_type 30 151 -109 15363 100 39 31 chr3 37950315 37952883 -189571695 + L1PBa LINE L1 3 2589 -4274 312 27 0 0 chr3 37953014 37953051 -189571527 + (TC)n Simple_repeat Simple_repeat 1 37 0 2436 146 24 9 chr3 37953105 37953531 -189571047 + MSTB1 LTR MaLR 1 432 0 890 190 92 0 chr3 37953533 37953728 -189570850 + MER20 DNA MER1_type 7 219 0 817 152 99 7 chr3 37954985 37955136 -189569442 - MER5A DNA MER1_type -15 174 10 927 287 105 32 chr3 37955377 37955757 -189568821 - MLT1K LTR MaLR -178 410 3 23 68 0 0 chr3 37956664 37956708 -189567870 + AT_rich Low_complexity Low_complexity 1 44 0 701 332 9 29 chr3 37957306 37957646 -189566932 - LTR16C LTR ERVL -90 401 69 2316 99 23 0 chr3 37957925 37958227 -189566351 - AluSg SINE Alu -1 309 1 230 154 0 39 chr3 37958729 37958781 -189565797 - HsTC2 DNA Tc2 -1835 63 14 216 0 0 0 chr3 37959237 37959261 -189565317 + (T)n Simple_repeat Simple_repeat 1 24 0 183 306 0 0 chr3 37960479 37960528 -189564050 + MIR SINE MIR 95 143 -119 3961 173 14 9 chr3 37960581 37961360 -189563218 - L1PB4 LINE L1 -4 6152 5370 239 156 16 31 chr3 37961488 37961552 -189563026 + (TAA)n Simple_repeat Simple_repeat 1 63 0 405 0 0 0 chr3 37961815 37961860 -189562718 + (TG)n Simple_repeat Simple_repeat 1 45 0 336 133 0 0 chr3 37961863 37961923 -189562655 + (GA)n Simple_repeat Simple_repeat 1 60 0 3667 111 20 0 chr3 37961941 37962482 -189562096 + MER41A LTR ERV1 3 554 0 5154 123 44 6 chr3 37962567 37963387 -189561191 + MER41A-int LTR ERV1 1 851 -5095 4127 160 88 22 chr3 37963378 37964354 -189560224 + MER41A-int LTR ERV1 934 2220 -3726 * 12750 153 71 50 chr3 37964335 37966469 -189558109 + MER41A-int LTR ERV1 2648 4873 -1073 2025 119 33 23 chr3 37966469 37966772 -189557806 + AluSx SINE Alu 1 306 -6 12750 153 71 50 chr3 37966772 37967867 -189556711 + MER41A-int LTR ERV1 4873 5944 -2 4269 81 0 0 chr3 37967867 37968421 -189556157 + MER41A LTR ERV1 1 554 0 2187 125 0 0 chr3 37968487 37968784 -189555794 - AluSg SINE Alu -13 297 1 367 297 171 0 chr3 37968793 37968968 -189555610 - L1ME4a LINE L1 -238 5883 5679 30 69 0 0 chr3 37969301 37969359 -189555219 + AT_rich Low_complexity Low_complexity 1 58 0 314 210 32 0 chr3 37969484 37969546 -189555032 - MIR SINE MIR -103 105 42 235 148 0 131 chr3 37970150 37970211 -189554367 + L2 LINE L2 3261 3313 0 500 300 12 42 chr3 37970261 37970501 -189554077 - L2 LINE L2 -37 3276 3044 1049 237 84 3 chr3 37970504 37970850 -189553728 - Zaphod DNA AcHobo -4 4027 3654 1163 250 44 45 chr3 37970881 37971520 -189553058 - Zaphod DNA AcHobo -3030 1001 364 435 290 14 0 chr3 37971526 37971664 -189552914 - MLT1F1 LTR MaLR 0 567 428 740 270 46 8 chr3 37971767 37972008 -189552570 - MER69 DNA AcHobo -2211 315 66 325 352 99 30 chr3 37973778 37974011 -189550567 + L2 LINE L2 2825 3073 -199 395 283 66 20 chr3 37974011 37974209 -189550369 + MER106A DNA MER1_type 1 207 -29 242 360 61 0 chr3 37974362 37974476 -189550102 + L2 LINE L2 3146 3266 -6 1524 204 21 43 chr3 37974946 37975318 -189549260 + MLT1A1 LTR MaLR 1 364 -1 550 340 33 12 chr3 37975401 37975645 -189548933 - MIR SINE MIR -4 258 10 218 261 15 15 chr3 37975994 37976059 -189548519 + GA-rich Low_complexity Low_complexity 2 66 0 412 316 119 21 chr3 37976849 37977042 -189547536 + MIR SINE MIR 13 224 -38 207 0 0 0 chr3 37977631 37977654 -189546924 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 483 304 70 25 chr3 37979186 37979387 -189545191 - MIR SINE MIR -34 228 19 355 281 99 54 chr3 37981285 37981606 -189542972 + L2 LINE L2 2736 3072 -200 284 276 252 0 chr3 37982396 37982519 -189542059 + L2 LINE L2 3160 3313 0 483 363 59 17 chr3 37983682 37983919 -189540659 + MIR SINE MIR 10 256 -6 306 0 0 0 chr3 37984369 37984403 -189540175 + (CA)n Simple_repeat Simple_repeat 1 34 0 345 240 8 32 chr3 37985010 37985135 -189539443 + L1MC4 LINE L1 7920 8041 -1 22 0 0 0 chr3 37985393 37985415 -189539163 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 37985560 37985583 -189538995 + AT_rich Low_complexity Low_complexity 1 23 0 818 185 47 31 chr3 37986491 37986682 -189537896 + MIR SINE MIR 42 238 -24 543 196 30 112 chr3 37988544 37988830 -189535748 - L1MD3 LINE L1 -14 7981 6072 811 262 74 4 chr3 37988916 37989145 -189535433 + MIR SINE MIR 13 257 -5 1761 170 0 41 chr3 37990077 37990395 -189534183 - AluJo SINE Alu -7 305 1 435 253 107 65 chr3 37990494 37991000 -189533578 + L1ME4a LINE L1 5543 6069 -52 945 226 144 50 chr3 37991261 37991623 -189532955 - MLT1D LTR MaLR 0 505 110 1308 167 5 0 chr3 37991650 37991866 -189532712 - U3 snRNA snRNA 0 217 1 2150 184 52 27 chr3 37991898 37992062 -189532516 - LTR32 LTR ERVL 0 471 313 2346 102 0 3 chr3 37992062 37992367 -189532211 + AluSc SINE Alu 1 304 -5 2150 184 52 27 chr3 37992367 37992648 -189531930 - LTR32 LTR ERVL -158 313 15 412 162 0 27 chr3 37992628 37992702 -189531876 - LTR32 LTR ERVL -383 88 17 * 263 255 32 32 chr3 37992689 37992783 -189531795 - MLT1D LTR MaLR -528 98 5 * 448 215 155 84 chr3 37993057 37993308 -189531270 - LTR33 LTR ERVL -24 497 229 396 288 13 52 chr3 37993334 37993487 -189531091 - LTR33 LTR ERVL -373 148 2 870 296 60 26 chr3 37993489 37993904 -189530674 - L2 LINE L2 -1248 2066 1638 1987 185 44 22 chr3 37994167 37994577 -189530001 - MSTB1 LTR MaLR -13 419 1 409 273 32 45 chr3 37994669 37994889 -189529689 - MER113 DNA MER1_type? -304 217 1 780 224 141 42 chr3 37996012 37996423 -189528155 - MLT1C LTR MaLR 0 467 8 238 293 91 0 chr3 37996961 37997060 -189527518 - MIR SINE MIR -48 214 107 1315 187 4 4 chr3 37998388 37998666 -189525912 + L1MA4 LINE L1 6018 6295 -5 186 280 174 38 chr3 37999940 38000072 -189524506 + L2 LINE L2 3122 3271 -1 540 205 21 115 chr3 38000203 38000387 -189524191 + MER58B DNA MER1_type 173 341 0 2015 148 0 7 chr3 38000886 38001189 -189523389 - AluSx SINE Alu -11 301 1 867 283 39 18 chr3 38001358 38001637 -189522941 - MLT1I LTR MaLR -4 405 121 498 252 32 93 chr3 38001773 38002019 -189522559 - L2 LINE L2 0 3313 3083 279 358 63 29 chr3 38002004 38002211 -189522367 - L2 LINE L2 -3064 250 37 * 221 244 22 0 chr3 38003237 38003282 -189521296 - L2 LINE L2 -21 3251 3206 1027 275 25 18 chr3 38003285 38003561 -189521017 + MLT1H LTR MaLR 13 290 -259 554 292 78 7 chr3 38003828 38003982 -189520596 - MIR SINE MIR -49 213 49 347 260 105 50 chr3 38006691 38006872 -189517706 + MIR SINE MIR 66 256 -6 600 277 121 49 chr3 38007828 38008390 -189516188 + MLT1E1 LTR MaLR 1 621 -3 375 89 0 0 chr3 38008501 38008557 -189516021 + (CA)n Simple_repeat Simple_repeat 1 56 0 10843 180 10 1 chr3 38008711 38011602 -189512976 + L1PA14 LINE L1 3254 6161 0 2049 205 103 40 chr3 38012187 38013010 -189511568 + MER63C DNA MER1_type 1 930 0 24 0 0 0 chr3 38013464 38013488 -189511090 + AT_rich Low_complexity Low_complexity 1 24 0 431 286 193 32 chr3 38013589 38014246 -189510332 + HAL1b LINE L1 93 855 -493 5426 215 30 15 chr3 38014250 38016224 -189508354 + L1MC1 LINE L1 4330 6330 -3 21 57 0 0 chr3 38016875 38016910 -189507668 + AT_rich Low_complexity Low_complexity 1 35 0 527 331 14 32 chr3 38016911 38017145 -189507433 - MIR SINE MIR -31 231 2 231 281 73 0 chr3 38017244 38017326 -189507252 - MIR SINE MIR -73 189 102 229 197 16 0 chr3 38018287 38018348 -189506230 - L1ME4a LINE L1 0 6121 6060 4797 80 17 5 chr3 38018425 38019077 -189505501 - PABL_A LTR ERV1 0 660 1 449 240 107 7 chr3 38019087 38019237 -189505341 + L1ME3 LINE L1 5997 6161 -1 496 266 80 42 chr3 38019857 38020120 -189504458 - LTR16A1 LTR ERVL -40 417 145 24 0 0 0 chr3 38021211 38021235 -189503343 + AT_rich Low_complexity Low_complexity 1 24 0 375 235 106 31 chr3 38021309 38021449 -189503129 + MIR SINE MIR 41 190 -62 3919 154 7 9 chr3 38021471 38022153 -189502425 + L1PA16 LINE L1 5476 6156 -10 355 269 71 50 chr3 38022600 38022741 -189501837 + MIR3 SINE MIR 35 178 -30 413 183 140 0 chr3 38023133 38023226 -189501352 - LTR47A LTR ERVL -86 366 261 805 145 0 0 chr3 38023454 38023571 -189501007 + AluSq/x SINE Alu 1 117 -196 9926 48 3 0 chr3 38023571 38025583 -189498995 - L1PA5 LINE L1 0 6154 4137 2382 32 0 0 chr3 38025583 38025868 -189498710 + L1P LINE L1 3609 3893 -2253 491 270 12 123 chr3 38026246 38026498 -189498080 - MLT1J LTR MaLR -145 366 143 212 213 307 0 chr3 38026915 38026990 -189497588 - MER5A DNA MER1_type -88 101 4 1339 182 38 22 chr3 38027002 38027320 -189497258 + MER33 DNA MER1_type 2 324 0 488 301 26 7 chr3 38027344 38027497 -189497081 + MIR SINE MIR 53 208 -54 189 0 0 0 chr3 38030056 38030077 -189494501 + (GA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr3 38031149 38031169 -189493409 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1251 182 45 57 chr3 38032128 38032530 -189492048 + L1ME2 LINE L1 5732 6065 -99 238 127 14 84 chr3 38032498 38032569 -189492009 - L1MC4 LINE L1 -1339 6703 6638 * 456 286 34 55 chr3 38032764 38033002 -189491576 - MIR SINE MIR -14 248 16 198 0 0 0 chr3 38033975 38033997 -189490581 + (CA)n Simple_repeat Simple_repeat 1 22 0 342 0 0 0 chr3 38034025 38034063 -189490515 + (CA)n Simple_repeat Simple_repeat 1 38 0 348 332 199 5 chr3 38035232 38035443 -189489135 + MIR SINE MIR 1 252 -10 1872 284 18 34 chr3 38037352 38038025 -189486553 + MLT2F LTR ERVL 1 662 -1 180 77 0 0 chr3 38038296 38038322 -189486256 + (TA)n Simple_repeat Simple_repeat 1 26 0 234 62 0 0 chr3 38038323 38038355 -189486223 + (TG)n Simple_repeat Simple_repeat 2 33 0 779 352 82 25 chr3 38038741 38039329 -189485249 + L3 LINE CR1 939 1559 -18 535 341 56 20 chr3 38039618 38039923 -189484655 + MER102b DNA MER1_type 26 341 0 320 258 25 33 chr3 38040010 38040130 -189484448 - LTR16C LTR ERVL 0 491 373 1099 177 32 85 chr3 38040591 38040743 -189483835 + MER58B DNA MER1_type 1 159 -2261 1037 16 8 0 chr3 38040743 38040869 -189483709 - L1PA6 LINE L1 0 6154 6028 1099 177 32 85 chr3 38040869 38041099 -189483479 + MER58B DNA MER1_type 159 341 0 342 320 39 0 chr3 38041784 38041887 -189482691 - L2 LINE L2 0 3272 3166 181 324 54 0 chr3 38042813 38042887 -189481691 + MIR3 SINE MIR 84 161 -47 27 29 0 0 chr3 38043665 38043699 -189480879 + AT_rich Low_complexity Low_complexity 1 34 0 618 330 32 5 chr3 38044194 38044382 -189480196 - MER91A DNA MER1_type -3 193 1 419 295 29 0 chr3 38045599 38045704 -189478874 - L2 LINE L2 -3 3310 3203 332 221 55 90 chr3 38046037 38046182 -189478396 - L1ME3A LINE L1 -8 6162 6023 617 203 27 27 chr3 38046552 38046700 -189477878 - L1ME3A LINE L1 -189 5981 5834 423 0 0 0 chr3 38046925 38046972 -189477606 + (TG)n Simple_repeat Simple_repeat 2 48 0 5023 215 74 76 chr3 38048703 38050725 -189473853 + L1MC4a LINE L1 5791 7808 0 937 254 72 6 chr3 38050742 38050920 -189473658 + L1ME3A LINE L1 810 975 -5421 2152 154 58 51 chr3 38050920 38051407 -189473171 + LTR2B LTR ERV1 1 490 0 937 254 72 6 chr3 38051407 38051575 -189473003 + L1ME3A LINE L1 975 1179 -5217 671 245 21 30 chr3 38051618 38051855 -189472723 + L1ME3A LINE L1 4495 4729 -1486 * 6862 28 0 0 chr3 38051847 38052666 -189471912 - L1PA3 LINE L1 -852 5294 4476 7160 20 0 1 chr3 38052666 38053496 -189471082 + L1PA3 LINE L1 5326 6155 0 31 0 0 0 chr3 38053496 38053527 -189471051 + AT_rich Low_complexity Low_complexity 1 31 0 260 216 112 9 chr3 38053616 38053732 -189470846 + L1ME3A LINE L1 5190 5317 -898 6042 210 30 24 chr3 38053775 38057142 -189467436 - L1MC1 LINE L1 0 6613 23 532 264 121 68 chr3 38057598 38057863 -189466715 - LTR33A LTR ERVL -242 281 3 378 262 77 37 chr3 38058926 38059212 -189465366 - MLT1G LTR MaLR -22 520 111 747 243 98 0 chr3 38059276 38059449 -189465129 + MER20 DNA MER1_type 30 219 0 336 274 60 17 chr3 38059449 38059561 -189465017 - MLT1G LTR MaLR -472 118 2 1458 59 134 4 chr3 38059648 38059886 -189464692 - L1MA1 LINE L1 0 6302 6034 277 344 85 67 chr3 38060704 38061035 -189463543 - L2 LINE L2 -2 3270 2934 1135 234 86 70 chr3 38061661 38062160 -189462418 + L1ME3A LINE L1 5718 6224 -15 273 346 40 0 chr3 38062988 38063089 -189461489 - Charlie8 DNA MER1_type -2310 107 3 314 295 141 26 chr3 38063090 38063246 -189461332 - MIR SINE MIR -59 203 30 22 56 0 0 chr3 38064100 38064136 -189460442 + AT_rich Low_complexity Low_complexity 1 36 0 3411 98 4 41 chr3 38064714 38065254 -189459324 - L1MA1 LINE L1 -78 6224 5705 * 14693 170 21 11 chr3 38065251 38068773 -189455805 - L1 LINE L1 -1031 6534 2977 5484 125 0 4 chr3 38068787 38069597 -189454981 - L1PA11 LINE L1 -12 6162 5356 1782 120 87 95 chr3 38069597 38069795 -189454783 - THE1B LTR MaLR 0 364 169 1945 116 0 0 chr3 38069795 38070054 -189454524 - AluSg1 SINE Alu -50 259 1 1782 120 87 95 chr3 38070054 38070222 -189454356 - THE1B LTR MaLR -195 169 1 3338 83 0 0 chr3 38070222 38070656 -189453922 - THE1B-int LTR MaLR 0 1580 1147 1712 193 66 30 chr3 38070656 38071019 -189453559 + MSTA LTR MaLR 53 428 0 10335 172 35 19 chr3 38071019 38072837 -189451741 - L1 LINE L1 -5710 1855 8 446 264 61 71 chr3 38072936 38073011 -189451567 - L1M4 LINE L1 -2301 3845 3771 18071 68 6 7 chr3 38073011 38076236 -189448342 - L1PA7 LINE L1 -3 6151 2931 446 264 61 71 chr3 38076236 38076455 -189448123 - L1M4 LINE L1 -2375 3771 3554 284 297 68 20 chr3 38076491 38076639 -189447939 + MIR SINE MIR 91 245 -17 21 0 0 0 chr3 38076744 38076765 -189447813 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 60 0 chr3 38078063 38078113 -189446465 + MIR SINE MIR 95 147 -115 417 398 64 28 chr3 38079554 38079989 -189444589 - L2 LINE L2 0 3272 2822 237 357 52 29 chr3 38080108 38080318 -189444260 - L2 LINE L2 -624 2690 2476 524 351 74 27 chr3 38080627 38081024 -189443554 - L2 LINE L2 -181 3091 2670 666 252 32 76 chr3 38081084 38081334 -189443244 + Charlie8 DNA MER1_type 33 271 -2146 2309 264 144 30 chr3 38081418 38082460 -189442118 + L2 LINE L2 1529 2689 -625 583 261 72 6 chr3 38082476 38082656 -189441922 - L1MC4a LINE L1 -371 7437 7246 2020 117 18 96 chr3 38083004 38083198 -189441380 + THE1B LTR MaLR 1 151 -213 2065 127 0 0 chr3 38083198 38083525 -189441053 + AluSq SINE Alu 1 327 0 2020 117 18 96 chr3 38083525 38083724 -189440854 + THE1B LTR MaLR 151 364 0 330 321 43 63 chr3 38083728 38084030 -189440548 + LTR16C LTR ERVL 181 476 -15 186 262 226 0 chr3 38084238 38084322 -189440256 - L2 LINE L2 -1481 1833 1731 270 294 0 46 chr3 38084456 38084565 -189440013 - L2 LINE L2 -300 2972 2869 281 244 30 30 chr3 38084728 38084863 -189439715 - L1MC5 LINE L1 -319 7642 7508 2201 117 0 0 chr3 38085861 38086160 -189438418 + AluSx SINE Alu 1 299 -13 449 311 88 10 chr3 38086661 38086854 -189437724 - MLT1I LTR MaLR -7 402 195 536 219 9 9 chr3 38086867 38086981 -189437597 + FAM SINE Alu 44 157 -28 1096 83 24 0 chr3 38086995 38087109 -189437469 + (GGAAA)n Simple_repeat Simple_repeat 1 288 0 1096 83 24 0 chr3 38087109 38087277 -189437301 + (GGAAA)n Simple_repeat Simple_repeat 4 175 0 263 211 18 0 chr3 38087306 38087363 -189437215 - MLT1I LTR MaLR -232 177 120 29 0 0 0 chr3 38087493 38087522 -189437056 + AT_rich Low_complexity Low_complexity 1 29 0 1068 198 24 5 chr3 38087546 38087753 -189436825 - MER2 DNA MER2_type -134 211 1 998 261 149 36 chr3 38087861 38088190 -189436388 + LTR16C LTR ERVL 126 491 0 22 0 0 0 chr3 38090033 38090055 -189434523 + AT_rich Low_complexity Low_complexity 1 22 0 1455 191 14 3 chr3 38090089 38090371 -189434207 - L1PA15 LINE L1 -2 6163 5879 336 276 50 45 chr3 38090934 38091155 -189433423 + L1MC5 LINE L1 7687 7908 -53 686 221 82 57 chr3 38091349 38091629 -189432949 + L1MC4 LINE L1 7189 7475 -567 30 27 0 0 chr3 38092461 38092498 -189432080 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr3 38092582 38092613 -189431965 + AT_rich Low_complexity Low_complexity 1 31 0 432 344 36 32 chr3 38092857 38093110 -189431468 + L1M4 LINE L1 4024 4277 -1869 313 274 174 48 chr3 38093291 38093670 -189430908 + L1M4 LINE L1 4601 5027 -1119 32 26 0 0 chr3 38093735 38093774 -189430804 + AT_rich Low_complexity Low_complexity 1 39 0 465 331 35 98 chr3 38095083 38095454 -189429124 + L2 LINE L2 2712 3059 -213 2519 116 5 5 chr3 38095555 38095925 -189428653 + THE1C LTR MaLR 6 375 0 348 305 30 23 chr3 38095929 38096060 -189428518 + L2 LINE L2 3141 3272 0 228 215 120 95 chr3 38096105 38096263 -189428315 + L1ME4a LINE L1 5851 6012 -109 223 346 99 0 chr3 38096455 38096556 -189428022 + MIR SINE MIR 40 150 -112 21 0 0 0 chr3 38097855 38097876 -189426702 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 38098713 38098739 -189425839 + (T)n Simple_repeat Simple_repeat 1 26 0 7611 28 0 0 chr3 38098761 38099743 -189424835 - L1PA2 LINE L1 0 6155 5175 15599 32 0 0 chr3 38099745 38101614 -189422964 + L1PA2 LINE L1 3300 5168 -978 1650 206 34 23 chr3 38102937 38103321 -189421257 + MLT1B LTR MaLR 1 388 -2 699 337 55 24 chr3 38103437 38103852 -189420726 - L2 LINE L2 -43 3270 2843 496 327 192 15 chr3 38103960 38105024 -189419554 + L2 LINE L2 1978 3250 -63 643 313 35 10 chr3 38105636 38105946 -189418632 + L1M4 LINE L1 2387 2704 -3442 246 244 85 0 chr3 38106134 38106216 -189418362 + Charlie8 DNA MER1_type 33 121 -2296 2378 214 20 20 chr3 38106217 38106806 -189417772 - L1MA10 LINE L1 -782 5364 4776 * 4745 187 18 9 chr3 38106803 38107588 -189416990 + L1MA10 LINE L1 5376 6172 -162 249 83 0 0 chr3 38107588 38107624 -189416954 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4745 187 18 9 chr3 38107624 38107789 -189416789 + L1MA10 LINE L1 6172 6334 0 246 289 60 60 chr3 38107792 38107958 -189416620 + Charlie8 DNA MER1_type 97 262 -2155 2318 285 35 21 chr3 38108089 38109089 -189415489 - L1ME3A LINE L1 -10 6229 5216 1007 241 127 94 chr3 38109362 38109911 -189414667 - MLT1F1 LTR MaLR 0 567 2 2338 297 60 40 chr3 38109912 38110164 -189414414 - L1ME3A LINE L1 -2038 4177 3932 2460 77 0 0 chr3 38110164 38110474 -189414104 - AluY SINE Alu -1 310 1 2338 297 60 40 chr3 38110474 38111893 -189412685 - L1ME3A LINE L1 -2283 3932 2472 1820 212 45 35 chr3 38111891 38113609 -189410969 - L1MB8 LINE L1 0 6989 5065 * 2271 208 13 51 chr3 38113628 38114153 -189410425 - L1MB8 LINE L1 -6346 513 9 636 314 77 17 chr3 38114165 38114774 -189409804 - L1MEc LINE L1 -3733 2482 1877 1354 191 4 40 chr3 38114800 38115077 -189409501 + AluJo SINE Alu 29 295 -17 568 313 48 33 chr3 38115120 38115638 -189408940 - L1MEc LINE L1 -4641 1755 1230 387 224 24 102 chr3 38115663 38115793 -189408785 - MLT1G LTR MaLR 0 590 419 19169 49 1 2 chr3 38115980 38118428 -189406150 + L1P LINE L1 1176 3622 -2524 646 240 120 35 chr3 38168430 38168795 -189355783 - LTR8A LTR ERV1 -103 609 222 193 258 162 42 chr3 38169613 38169780 -189354798 - L2 LINE L2 -656 2658 2472 316 171 0 79 chr3 38169789 38169865 -189354713 + FLAM_A SINE Alu 64 133 0 400 181 21 43 chr3 38169934 38170028 -189354550 + AluJo SINE Alu 56 147 -165 245 263 237 29 chr3 38170109 38170387 -189354191 - L2 LINE L2 -936 2378 2043 6901 86 24 5 chr3 38170732 38171786 -189352792 + MER61-int LTR ERV1 2095 3168 -2049 2353 96 0 3 chr3 38172596 38172898 -189351680 - AluSx SINE Alu -11 301 1 2512 27 7 3 chr3 38173279 38173577 -189351001 + AluY SINE Alu 1 299 -12 279 203 0 0 chr3 38173626 38173690 -189350888 + CT-rich Low_complexity Low_complexity 4 67 0 186 43 0 0 chr3 38174455 38174478 -189350100 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1036 91 0 0 chr3 38174479 38174611 -189349967 - AluY SINE Alu -179 132 1 32 43 0 0 chr3 38175728 38175774 -189348804 + AT_rich Low_complexity Low_complexity 1 46 0 1713 301 146 22 chr3 38176103 38176950 -189347628 + L2 LINE L2 1957 2908 -406 777 298 109 28 chr3 38177107 38177500 -189347078 + L2 LINE L2 2889 3313 0 282 326 136 20 chr3 38177855 38178002 -189346576 - L2 LINE L2 -6 3266 3103 333 177 94 31 chr3 38178177 38178273 -189346305 - MER94 DNA DNA -9 125 24 278 193 0 12 chr3 38179406 38179489 -189345089 + (TA)n Simple_repeat Simple_repeat 1 82 0 643 186 51 17 chr3 38179492 38179610 -189344968 - FLAM_A SINE Alu -11 122 1 2729 231 56 29 chr3 38180363 38181183 -189343395 + MER21B LTR ERV1 1 842 -21 2496 43 0 7 chr3 38181359 38181659 -189342919 + AluY SINE Alu 1 298 -13 308 303 7 14 chr3 38181712 38181854 -189342724 - L1ME3A LINE L1 -213 5957 5817 318 319 30 48 chr3 38182369 38182450 -189342128 - L1MEd LINE L1 -5939 180 99 240 35 0 0 chr3 38182450 38182479 -189342099 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 319 30 48 chr3 38182479 38182504 -189342074 - L1MEd LINE L1 -6020 99 75 2313 86 6 49 chr3 38182504 38182830 -189341748 - AluSp SINE Alu -1 312 1 318 319 30 48 chr3 38182830 38182888 -189341690 - L1MEd LINE L1 -6044 75 18 21 0 0 0 chr3 38182983 38183004 -189341574 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr3 38183033 38183089 -189341489 + AT_rich Low_complexity Low_complexity 1 56 0 30 52 0 39 chr3 38183375 38183452 -189341126 + AT_rich Low_complexity Low_complexity 1 74 0 2776 177 28 16 chr3 38183875 38184456 -189340122 + L1MB5 LINE L1 5579 6166 -8 2385 58 0 7 chr3 38184458 38184751 -189339827 + AluY SINE Alu 1 291 -20 336 127 0 0 chr3 38184800 38184855 -189339723 - MER103 DNA DNA -52 114 60 1631 142 20 116 chr3 38185095 38185439 -189339139 + AluYb8 SINE Alu 1 311 -7 516 289 65 15 chr3 38185622 38185823 -189338755 - LTR16A LTR ERVL -6 444 234 25 31 0 0 chr3 38187964 38187996 -189336582 + AT_rich Low_complexity Low_complexity 1 32 0 4209 43 8 0 chr3 38187996 38188509 -189336069 - L1PA5 LINE L1 -8 6146 5630 4222 66 12 0 chr3 38188509 38189193 -189335385 + L1M1 LINE L1 4809 5497 -689 752 318 54 8 chr3 38189193 38189435 -189335143 + MIR SINE MIR 8 260 -2 213 295 16 57 chr3 38189600 38189722 -189334856 - L2 LINE L2 -511 2803 2687 196 77 51 0 chr3 38189793 38189832 -189334746 + (TG)n Simple_repeat Simple_repeat 1 41 0 855 320 59 5 chr3 38189886 38190261 -189334317 - MLT1J LTR MaLR -114 397 3 426 304 87 69 chr3 38190331 38190475 -189334103 - L2 LINE L2 -836 2478 2338 2321 73 10 7 chr3 38190475 38190775 -189333803 + AluY SINE Alu 1 301 -10 426 304 87 69 chr3 38190775 38190919 -189333659 - L2 LINE L2 -976 2338 2185 903 236 9 24 chr3 38191640 38191852 -189332726 + MER58A DNA MER1_type 15 223 -1 889 171 5 62 chr3 38192924 38193117 -189331461 + MER3 DNA MER1_type 27 208 -1 541 144 0 31 chr3 38193467 38193564 -189331014 + L1MC1 LINE L1 6231 6324 -9 183 80 0 0 chr3 38193569 38193594 -189330984 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr3 38193665 38193686 -189330892 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 38194551 38194586 -189329992 + AT_rich Low_complexity Low_complexity 1 35 0 2752 203 24 70 chr3 38194934 38195149 -189329429 + MER72 LTR ERV1 1 224 -498 2089 136 3 0 chr3 38195149 38195451 -189329127 - AluSx SINE Alu -9 303 1 2752 203 24 70 chr3 38195451 38195992 -189328586 + MER72 LTR ERV1 224 722 0 650 186 8 0 chr3 38196302 38196426 -189328152 + MLT1B LTR MaLR 1 125 -265 255 204 0 0 chr3 38196424 38196473 -189328105 + LTR28 LTR ERV1 9 57 -963 * 1781 159 28 60 chr3 38196445 38196880 -189327698 + MER61C LTR ERV1 14 434 0 1229 178 40 8 chr3 38196883 38197136 -189327442 + MLT1B LTR MaLR 127 387 -3 3233 131 103 21 chr3 38198104 38198675 -189325903 + LTR35 LTR ERV1 1 618 0 3249 133 101 21 chr3 38199436 38200008 -189324570 + LTR35 LTR ERV1 1 618 0 1729 206 141 84 chr3 38200089 38200775 -189323803 - MER50 LTR ERV1 0 734 10 2383 173 74 42 chr3 38201000 38201567 -189323011 + MER34C LTR ERV1 1 585 0 396 200 0 0 chr3 38202439 38202504 -189322074 - MER96 DNA MER1_type? 0 175 111 1004 187 28 11 chr3 38202517 38202699 -189321879 - MER58A DNA MER1_type -36 188 4 1949 133 28 0 chr3 38203003 38203289 -189321289 + AluSx SINE Alu 8 301 -11 186 315 161 35 chr3 38203412 38203555 -189321023 + L2 LINE L2 3112 3272 0 436 307 28 6 chr3 38203871 38204050 -189320528 + L1MC5 LINE L1 7744 7926 -35 182 170 0 21 chr3 38204184 38204231 -189320347 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 193 36 12 chr3 38204251 38204334 -189320244 + (TA)n Simple_repeat Simple_repeat 1 85 0 2092 134 3 13 chr3 38204385 38204698 -189319880 - AluSx SINE Alu 0 312 3 460 275 136 42 chr3 38204879 38205115 -189319463 - MIR SINE MIR 0 262 5 399 247 43 0 chr3 38205309 38205402 -189319176 - MLT1I LTR MaLR -26 383 287 587 270 16 82 chr3 38206447 38206765 -189317813 - L1MD2 LINE L1 -13 6346 6050 350 225 0 12 chr3 38206807 38206887 -189317691 - MLT1L LTR MaLR -536 79 1 2152 113 0 0 chr3 38207929 38208244 -189316334 + AluSx SINE Alu 1 315 0 1320 290 53 27 chr3 38209481 38209970 -189314608 + MLT1H1 LTR MaLR 3 589 -1 779 236 133 0 chr3 38210047 38210242 -189314336 - MIR SINE MIR -25 237 17 1877 161 24 0 chr3 38210405 38210703 -189313875 + AluJo SINE Alu 1 305 -7 300 27 0 0 chr3 38211212 38211249 -189313329 + (TG)n Simple_repeat Simple_repeat 2 38 0 251 212 91 40 chr3 38211388 38211487 -189313091 - MLT1L LTR MaLR -4 611 508 191 313 61 61 chr3 38212348 38212447 -189312131 + MER5A DNA MER1_type 14 112 -77 * 228 256 47 101 chr3 38212374 38212503 -189312075 - MER5A DNA MER1_type -22 167 46 2167 73 7 18 chr3 38212505 38212826 -189311752 + AluY SINE Alu 1 318 0 23 0 0 0 chr3 38212926 38212949 -189311629 + AT_rich Low_complexity Low_complexity 1 23 0 434 267 106 81 chr3 38214640 38214962 -189309616 + MER102a DNA MER1_type 1 330 0 1853 253 30 24 chr3 38215357 38215852 -189308726 + LTR31 LTR ERV1 106 603 -16 471 305 14 7 chr3 38215996 38216137 -189308441 + MER97a DNA MER1_type? 2 143 -751 3208 239 21 14 chr3 38216138 38216896 -189307682 + L1MA1 LINE L1 15 777 -6788 * 15449 161 20 11 chr3 38216895 38222823 -189301755 + L1MA1 LINE L1 1731 7716 -5 24 0 0 0 chr3 38222824 38222848 -189301730 + AT_rich Low_complexity Low_complexity 1 24 0 506 197 0 63 chr3 38222848 38222975 -189301603 + MER97c DNA MER1_type? 131 249 -841 462 36 0 0 chr3 38222977 38223033 -189301545 + (TG)n Simple_repeat Simple_repeat 2 57 0 1434 241 45 9 chr3 38223037 38223369 -189301209 - MSTD LTR MaLR -12 384 41 778 266 5 41 chr3 38223372 38223590 -189300988 - MLT-int LTR MaLR -981 754 545 769 263 33 5 chr3 38223583 38223796 -189300782 - MSTD-int LTR MaLR -1515 220 2 * 1865 202 39 21 chr3 38223796 38224178 -189300400 - MSTD LTR MaLR -2 394 6 1341 227 71 6 chr3 38224183 38224536 -189300042 + MER97c DNA MER1_type? 244 619 -471 24 0 0 0 chr3 38224935 38224959 -189299619 + AT_rich Low_complexity Low_complexity 1 24 0 259 266 39 31 chr3 38224972 38225100 -189299478 + MER97c DNA MER1_type? 953 1081 -9 21 57 0 0 chr3 38225737 38225772 -189298806 + AT_rich Low_complexity Low_complexity 1 35 0 209 265 61 20 chr3 38226021 38226119 -189298459 + MIR SINE MIR 96 197 -65 310 252 81 49 chr3 38227139 38227262 -189297316 + MIR SINE MIR 14 140 -122 351 183 0 0 chr3 38227269 38227340 -189297238 + MER72 LTR ERV1 1 71 -651 333 252 81 49 chr3 38227433 38227556 -189297022 + MIR SINE MIR 14 140 -122 2869 200 21 65 chr3 38227563 38228318 -189296260 + MER72 LTR ERV1 1 722 0 1695 274 51 26 chr3 38228370 38228899 -189295679 - MLT1G LTR MaLR 0 590 49 401 297 38 32 chr3 38229010 38229195 -189295383 - MIR SINE MIR -30 232 47 1538 199 40 0 chr3 38229203 38229479 -189295099 + AluJo SINE Alu 1 287 -25 206 32 32 0 chr3 38229488 38229519 -189295059 + (CAA)n Simple_repeat Simple_repeat 1 32 0 376 214 62 27 chr3 38230008 38230120 -189294458 + MLT1L LTR MaLR 165 280 -335 1933 118 42 0 chr3 38230139 38230426 -189294152 - AluSx SINE Alu -12 300 2 1026 248 114 43 chr3 38230574 38230994 -189293584 + LTR16A1 LTR ERVL 8 457 0 1024 221 69 0 chr3 38231591 38231894 -189292684 + MER33 DNA MER1_type 1 324 0 718 254 91 35 chr3 38231996 38232447 -189292131 + Charlie7 DNA MER1_type 675 1223 -1389 367 278 208 43 chr3 38232573 38232828 -189291750 + MLT1J LTR MaLR 92 388 -123 202 150 75 0 chr3 38233823 38233863 -189290715 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 456 255 70 66 chr3 38234320 38234579 -189289999 - MLT1K LTR MaLR 0 588 329 231 281 61 0 chr3 38235145 38235227 -189289351 - MLT1L LTR MaLR -197 418 332 577 140 18 9 chr3 38235248 38235362 -189289216 + L1MC3 LINE L1 7669 7783 -2 262 257 134 89 chr3 38235443 38235622 -189288956 - MLT1L LTR MaLR -361 254 68 222 215 77 0 chr3 38235724 38235789 -189288789 + MIR SINE MIR 191 260 -2 278 315 34 72 chr3 38235933 38236168 -189288410 - L2 LINE L2 -785 2529 2304 204 294 0 0 chr3 38236255 38236306 -189288272 - L2 LINE L2 0 3313 3263 250 211 18 0 chr3 38236658 38236715 -189287863 + (TA)n Simple_repeat Simple_repeat 1 58 0 3450 194 18 14 chr3 38236804 38237569 -189287009 - L1MD1 LINE L1 0 6636 5869 23 0 0 0 chr3 38237573 38237596 -189286982 + AT_rich Low_complexity Low_complexity 1 23 0 2242 64 7 20 chr3 38237599 38237894 -189286684 - AluY SINE Alu -20 291 1 2069 136 60 16 chr3 38237895 38238277 -189286301 - L1MA9 LINE L1 0 6312 5914 1526 164 20 24 chr3 38238278 38238448 -189286130 + L1MA9 LINE L1 5612 5782 -530 387 0 0 0 chr3 38238448 38238491 -189286087 + (CA)n Simple_repeat Simple_repeat 2 44 0 1526 164 20 24 chr3 38238491 38238613 -189285965 + L1MA9 LINE L1 5782 5903 -409 8363 239 74 26 chr3 38238622 38239141 -189285437 - L1MD1 LINE L1 -743 5797 5305 324 48 0 0 chr3 38239141 38239183 -189285395 + (TG)n Simple_repeat Simple_repeat 1 42 0 8363 239 74 26 chr3 38239183 38239908 -189284670 - L1MD1 LINE L1 -1235 5305 4617 360 0 0 0 chr3 38239908 38239948 -189284630 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8363 239 74 26 chr3 38239948 38240537 -189284041 - L1MD1 LINE L1 -1923 4617 4058 2512 44 14 0 chr3 38240537 38240834 -189283744 - AluY SINE Alu -10 301 1 8363 239 74 26 chr3 38240834 38244575 -189280003 - L1MD1 LINE L1 -2482 4058 17 199 333 30 0 chr3 38244593 38244659 -189279919 - MIR SINE MIR -136 126 59 2355 100 3 0 chr3 38244815 38245124 -189279454 + AluSx SINE Alu 1 310 -2 388 241 12 0 chr3 38245771 38245854 -189278724 + MIR SINE MIR 71 154 -108 233 318 182 0 chr3 38248165 38248275 -189276303 - L2 LINE L2 -6 3266 3137 581 259 129 43 chr3 38248297 38248529 -189276049 + MIR SINE MIR 2 253 -9 569 219 66 141 chr3 38249292 38249471 -189275107 - MLT1H1 LTR MaLR -185 370 179 2059 122 16 3 chr3 38249471 38249774 -189274804 - AluY SINE Alu -4 307 1 569 219 66 141 chr3 38249774 38249792 -189274786 - MLT1H1 LTR MaLR -376 179 161 741 187 8 15 chr3 38249792 38249926 -189274652 - FLAM_A SINE Alu 0 133 1 569 219 66 141 chr3 38249926 38250074 -189274504 - MLT1H1 LTR MaLR -394 161 50 2329 106 0 0 chr3 38250563 38250865 -189273713 - AluSg SINE Alu -8 302 1 579 189 0 0 chr3 38251252 38251347 -189273231 - MER34 LTR ERV1 -447 95 1 567 248 30 8 chr3 38251396 38251529 -189273049 + MIR SINE MIR 21 156 -106 251 273 15 0 chr3 38251529 38251595 -189272983 + L1ME4a LINE L1 5973 6039 -82 1761 179 0 40 chr3 38252697 38253022 -189271556 - AluJo SINE Alu 0 312 1 360 236 73 79 chr3 38253600 38253765 -189270813 - L2 LINE L2 0 3313 3150 277 285 102 77 chr3 38254023 38254297 -189270281 - L2 LINE L2 -481 2833 2553 442 246 98 0 chr3 38254692 38254814 -189269764 + MER94 DNA DNA 1 134 0 352 274 197 17 chr3 38255089 38255206 -189269372 + MER5A DNA MER1_type 46 183 -6 270 220 51 59 chr3 38255215 38255405 -189269173 + MER112 DNA MER1_type 22 248 -12 406 79 26 0 chr3 38256972 38257048 -189267530 + (TA)n Simple_repeat Simple_repeat 2 79 0 2479 48 7 0 chr3 38257119 38257409 -189267169 - AluSc SINE Alu -17 292 1 320 231 50 99 chr3 38257463 38257584 -189266994 + MIR3 SINE MIR 82 196 -12 288 221 74 53 chr3 38259282 38259377 -189265201 - L2 LINE L2 -9 3263 3167 623 290 59 15 chr3 38259713 38259943 -189264635 + MIR SINE MIR 9 256 -6 412 345 36 7 chr3 38260094 38260233 -189264345 + L2 LINE L2 2944 3086 -186 185 139 28 28 chr3 38260675 38260711 -189263867 - L2 LINE L2 -501 2813 2778 226 306 149 0 chr3 38261332 38261453 -189263125 - MIR SINE MIR -4 258 120 189 107 0 0 chr3 38262304 38262332 -189262246 + (T)n Simple_repeat Simple_repeat 1 28 0 1272 275 65 84 chr3 38262404 38263081 -189261497 + MER115 DNA AcHobo 30 693 0 225 94 0 0 chr3 38263275 38263307 -189261271 + (T)n Simple_repeat Simple_repeat 1 32 0 525 322 130 0 chr3 38263791 38264021 -189260557 - MIR SINE MIR -1 261 2 367 228 9 53 chr3 38264397 38264511 -189260067 + MER69 DNA AcHobo 4 112 -1114 * 2229 163 84 46 chr3 38264494 38264919 -189259659 + MER69 DNA AcHobo 1938 2390 -136 1325 209 47 57 chr3 38264919 38265215 -189259363 - AluJo SINE Alu -9 293 1 2229 163 84 46 chr3 38265215 38265349 -189259229 + MER69 DNA AcHobo 2390 2518 -8 219 273 82 45 chr3 38265683 38265793 -189258785 + MIR3 SINE MIR 82 195 -13 22 0 0 0 chr3 38266704 38266726 -189257852 + AT_rich Low_complexity Low_complexity 1 22 0 397 256 192 0 chr3 38266948 38267073 -189257505 + MER5A DNA MER1_type 41 189 0 2339 98 0 25 chr3 38267390 38267708 -189256870 - AluSg SINE Alu 0 310 1 2415 57 0 0 chr3 38269079 38269384 -189255194 + AluY SINE Alu 1 305 0 2194 134 0 0 chr3 38270449 38270754 -189253824 - AluSq SINE Alu -8 305 1 2346 100 0 0 chr3 38271779 38272080 -189252498 + AluSg SINE Alu 7 307 -3 357 280 43 0 chr3 38272322 38272415 -189252163 - MIR SINE MIR -76 186 90 2318 105 0 3 chr3 38273033 38273339 -189251239 + AluSx SINE Alu 1 305 -7 2399 87 0 0 chr3 38273509 38273808 -189250770 + AluSc SINE Alu 1 299 -10 671 246 18 18 chr3 38275141 38275312 -189249266 - MER5B DNA MER1_type -6 172 2 226 328 64 16 chr3 38275313 38275438 -189249140 - MIR3 SINE MIR -48 160 30 721 207 132 0 chr3 38276240 38276414 -189248164 + MER3 DNA MER1_type 1 197 -12 464 268 246 43 chr3 38276779 38277108 -189247470 - L2 LINE L2 -10 3303 2908 1165 172 91 118 chr3 38277738 38278110 -189246468 + MLT1A1 LTR MaLR 1 362 -3 2191 122 0 3 chr3 38278154 38278457 -189246121 - AluSc SINE Alu -7 302 1 219 69 0 0 chr3 38278732 38278761 -189245817 + (T)n Simple_repeat Simple_repeat 1 29 0 278 261 43 22 chr3 38278869 38278961 -189245617 - MIR3 SINE MIR -21 187 94 264 345 124 0 chr3 38279906 38280019 -189244559 - MIR SINE MIR -121 141 15 332 338 71 0 chr3 38280298 38280452 -189244126 + MIR SINE MIR 94 258 -4 677 269 65 37 chr3 38280658 38280952 -189243626 - MER102a DNA MER1_type -6 324 23 204 150 25 0 chr3 38282453 38282493 -189242085 + A-rich Low_complexity Low_complexity 2 42 0 186 171 0 0 chr3 38282992 38283033 -189241545 + (CA)n Simple_repeat Simple_repeat 1 41 0 206 235 0 39 chr3 38283112 38283163 -189241415 + L2 LINE L2 3172 3220 -93 420 20 0 0 chr3 38283270 38283319 -189241259 + (TG)n Simple_repeat Simple_repeat 2 50 0 300 53 0 0 chr3 38283321 38283359 -189241219 - Alu SINE Alu -265 38 1 270 81 0 0 chr3 38283841 38283878 -189240700 + (TG)n Simple_repeat Simple_repeat 2 38 0 2509 75 0 0 chr3 38283901 38284207 -189240371 + AluY SINE Alu 1 306 -5 755 307 110 26 chr3 38284221 38284234 -189240344 - L1MC4a LINE L1 -1884 5924 5914 1128 270 97 41 chr3 38284234 38284727 -189239851 - LTR33 LTR ERVL 0 521 1 755 307 110 26 chr3 38284727 38285205 -189239373 - L1MC4a LINE L1 -1894 5914 5392 1730 157 75 3 chr3 38286354 38286647 -189237931 + MLT2C1 LTR ERVL 1 314 -83 2221 144 12 6 chr3 38287506 38287847 -189236731 + MER2 DNA MER2_type 1 343 -1 260 219 0 14 chr3 38288974 38289047 -189235531 + CT-rich Low_complexity Low_complexity 4 75 0 926 191 17 23 chr3 38289492 38289665 -189234913 + MER5B DNA MER1_type 5 176 -2 423 275 67 8 chr3 38290768 38290888 -189233690 - L2 LINE L2 0 3313 3187 204 232 29 72 chr3 38291152 38291221 -189233357 + L2 LINE L2 3203 3268 -4 2239 121 0 0 chr3 38292606 38292904 -189231674 - AluSx SINE Alu -14 298 1 207 0 0 0 chr3 38292938 38292961 -189231617 + (TC)n Simple_repeat Simple_repeat 1 23 0 895 334 101 5 chr3 38293432 38293866 -189230712 + L3 LINE CR1 1077 1552 -25 502 297 138 25 chr3 38294186 38294583 -189229995 + LTR16A1 LTR ERVL 16 457 0 270 0 0 0 chr3 38294680 38294710 -189229868 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 28 48 0 0 chr3 38294770 38294812 -189229766 + AT_rich Low_complexity Low_complexity 1 42 0 2024 113 0 7 chr3 38294812 38295096 -189229482 - AluSg SINE Alu -28 282 1 387 0 0 0 chr3 38295539 38295582 -189228996 + (CA)n Simple_repeat Simple_repeat 2 44 0 983 175 73 6 chr3 38297824 38298001 -189226577 + MER5A DNA MER1_type 1 189 0 210 174 0 0 chr3 38298512 38298558 -189226020 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 386 307 101 26 chr3 38298727 38298916 -189225662 - L1MC/D LINE L1 -2051 5757 5555 2159 123 10 0 chr3 38299353 38299653 -189224925 - AluSx SINE Alu -9 303 1 2376 110 0 0 chr3 38300370 38300671 -189223907 - AluSx SINE Alu -11 301 1 532 335 20 5 chr3 38300909 38301112 -189223466 - MIR SINE MIR 0 262 57 185 207 0 17 chr3 38301150 38301208 -189223370 + CT-rich Low_complexity Low_complexity 4 60 0 668 292 96 5 chr3 38302073 38302282 -189222296 + MIR SINE MIR 1 228 -34 273 209 116 0 chr3 38302840 38302926 -189221652 + MIR SINE MIR 145 240 -22 459 228 215 0 chr3 38303013 38303162 -189221416 + MER5A DNA MER1_type 9 189 0 201 308 26 13 chr3 38304154 38304232 -189220346 - MIR3 SINE MIR -54 154 76 591 280 102 22 chr3 38304550 38304775 -189219803 + MIR SINE MIR 16 258 -4 945 185 56 0 chr3 38305107 38305285 -189219293 - MER58A DNA MER1_type 0 224 37 189 74 0 0 chr3 38305512 38305539 -189219039 + (TTG)n Simple_repeat Simple_repeat 1 27 0 759 201 52 35 chr3 38307425 38307599 -189216979 - MER5B DNA MER1_type -1 177 1 318 348 93 42 chr3 38308572 38308980 -189215598 + L3 LINE CR1 712 1140 -437 210 374 34 39 chr3 38309095 38309301 -189215277 + L3 LINE CR1 1178 1382 -195 181 298 160 11 chr3 38309409 38309503 -189215075 + L3 LINE CR1 1455 1562 -15 477 230 191 7 chr3 38310026 38310178 -189214400 - MER5A DNA MER1_type -7 182 3 201 214 0 36 chr3 38310320 38310376 -189214202 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 289 247 201 41 chr3 38310377 38310601 -189213977 - L1MC4 LINE L1 -163 7674 7390 455 303 20 50 chr3 38310762 38310960 -189213618 + L1ME3A LINE L1 5962 6153 -17 1653 164 8 4 chr3 38311131 38311393 -189213185 - AluJo SINE Alu -39 273 11 258 288 36 36 chr3 38312486 38312597 -189211981 + MIR SINE MIR 120 230 -32 1118 189 51 18 chr3 38312891 38313290 -189211288 - Charlie4a DNA MER1_type -18 490 7 1443 151 50 47 chr3 38313777 38314055 -189210523 - AluJo SINE Alu -33 279 1 604 260 33 54 chr3 38314109 38314351 -189210227 + MIR SINE MIR 9 245 -17 976 195 73 24 chr3 38315047 38315252 -189209326 - MER58C DNA MER1_type 0 215 1 242 321 9 47 chr3 38315297 38315403 -189209175 - L2 LINE L2 -2 3270 3169 1454 181 35 3 chr3 38316115 38316403 -189208175 + AluSg SINE Alu 1 297 -13 4792 107 10 3 chr3 38316414 38317022 -189207556 - LTR9 LTR ERV1 0 612 1 187 296 0 0 chr3 38317497 38317551 -189207027 + L2 LINE L2 3258 3311 -2 183 240 240 13 chr3 38318186 38318261 -189206317 + L2 LINE L2 3168 3259 -13 234 303 172 14 chr3 38318264 38318409 -189206169 - L2 LINE L2 -5 3267 3100 204 361 76 8 chr3 38318507 38318626 -189205952 - L2 LINE L2 -266 3047 2921 2229 110 7 0 chr3 38322513 38322804 -189201774 - AluSg SINE Alu -17 293 1 2871 242 52 36 chr3 38322821 38323734 -189200844 - L1MC4a LINE L1 0 7808 6882 2468 70 0 3 chr3 38325386 38325688 -189198890 + AluY SINE Alu 2 302 -9 391 223 36 27 chr3 38326728 38326840 -189197738 - MIR SINE MIR -41 221 109 2047 98 0 0 chr3 38326978 38327242 -189197336 + AluSg1 SINE Alu 14 277 -32 370 269 77 104 chr3 38327525 38327785 -189196793 - L2 LINE L2 0 3313 3061 189 0 0 0 chr3 38328280 38328301 -189196277 + (A)n Simple_repeat Simple_repeat 1 21 0 1073 204 133 18 chr3 38328916 38329195 -189195383 - LTR16C LTR ERVL 0 491 181 315 191 59 15 chr3 38330196 38330264 -189194314 + MIR3 SINE MIR 110 180 -28 341 296 72 3 chr3 38330370 38330617 -189193961 + MER5C DNA MER1_type 1 323 -1 1395 260 56 40 chr3 38332532 38332982 -189191596 - LTR16A1 LTR ERVL 0 457 1 284 260 32 84 chr3 38333269 38333423 -189191155 - L2 LINE L2 -8 3305 3160 255 61 0 0 chr3 38334023 38334056 -189190522 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 262 335 55 66 chr3 38334056 38334313 -189190265 - L2 LINE L2 -13 3259 3006 244 185 0 62 chr3 38334435 38334500 -189190078 - MER106A DNA MER1_type 0 236 176 794 184 22 0 chr3 38334506 38334642 -189189936 - FLAM_C SINE Alu -3 140 2 1891 167 50 30 chr3 38334682 38335083 -189189495 - L1MB3 LINE L1 -2 6181 5773 594 190 25 0 chr3 38335085 38335206 -189189372 - MER106A DNA MER1_type -112 124 1 263 250 174 11 chr3 38335216 38335308 -189189270 + L2 LINE L2 3158 3264 -8 2188 161 17 27 chr3 38337762 38338172 -189186406 + L1MC1 LINE L1 5908 6313 -20 246 125 0 0 chr3 38339029 38339077 -189185501 + (TA)n Simple_repeat Simple_repeat 1 48 0 289 241 121 0 chr3 38339877 38339960 -189184618 + Charlie8 DNA MER1_type 46 138 -2279 225 0 0 0 chr3 38341371 38341396 -189183182 + (A)n Simple_repeat Simple_repeat 1 25 0 1292 159 9 40 chr3 38341876 38342102 -189182476 - MER20 DNA MER1_type 0 219 1 460 181 12 0 chr3 38342190 38342273 -189182305 + MIR SINE MIR 61 144 -118 340 293 120 0 chr3 38342573 38342706 -189181872 - MIR SINE MIR -73 189 41 632 238 153 15 chr3 38343277 38343479 -189181099 - MIR SINE MIR -2 260 31 203 147 0 0 chr3 38344371 38344405 -189180173 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr3 38344405 38344444 -189180134 + (CA)n Simple_repeat Simple_repeat 2 40 0 700 288 60 26 chr3 38344615 38344848 -189179730 + MIR SINE MIR 6 246 -16 219 269 97 21 chr3 38345341 38345434 -189179144 - MIR SINE MIR -76 186 87 181 404 0 0 chr3 38345650 38345707 -189178871 - L2 LINE L2 -93 3179 3123 674 212 8 8 chr3 38345917 38346049 -189178529 - MLT1D LTR MaLR -1 466 335 734 219 44 44 chr3 38346052 38346235 -189178343 - MLT1D LTR MaLR -322 183 1 203 258 0 97 chr3 38346748 38346810 -189177768 + MIR SINE MIR 43 98 -110 1171 255 94 61 chr3 38346821 38347330 -189177248 - MLT1H1 LTR MaLR -29 526 1 181 277 145 12 chr3 38347333 38347416 -189177162 + MIR3 SINE MIR 103 196 -12 224 163 20 0 chr3 38347585 38347634 -189176944 + (TG)n Simple_repeat Simple_repeat 1 50 0 645 235 86 23 chr3 38348728 38348948 -189175630 + MER46C DNA MER2_type 1 234 -104 294 186 107 0 chr3 38348948 38349021 -189175557 + LTR48B LTR ERV1 1 43 -601 619 217 50 23 chr3 38349031 38349303 -189175275 + LTR48 LTR ERV1 186 619 -168 293 53 26 0 chr3 38349296 38349334 -189175244 - MER4D LTR ERV1 -38 865 827 * 4346 152 25 51 chr3 38349335 38350170 -189174408 - MER4D LTR ERV1 -50 853 41 437 244 47 47 chr3 38350170 38350297 -189174281 + LTR8 LTR ERV1 1 127 -564 * 1820 192 66 70 chr3 38350290 38350790 -189173788 + LTR8A LTR ERV1 230 727 0 785 140 51 73 chr3 38350834 38351012 -189173566 + LTR48 LTR ERV1 602 775 -12 216 0 0 0 chr3 38351109 38351133 -189173445 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 143 45 9 chr3 38351180 38351292 -189173286 - MER34B LTR ERV1 -3 562 447 441 223 77 46 chr3 38351296 38351426 -189173152 + LTR39 LTR ERV1 565 698 -85 * 2291 140 71 15 chr3 38351423 38351831 -189172747 - MER34C LTR ERV1 -123 462 32 4169 193 38 7 chr3 38352559 38353311 -189171267 + LTR39 LTR ERV1 1 776 -7 3186 114 47 8 chr3 38353311 38353803 -189170775 + MER9 LTR ERVK 1 511 0 2368 152 28 21 chr3 38354094 38354523 -189170055 + MSTB1 LTR MaLR 1 432 0 1224 182 89 34 chr3 38355479 38355898 -189168680 + MER39B LTR ERV1 1 553 -154 1884 198 77 81 chr3 38355898 38356454 -189168124 - MLT2B3 LTR ERVL 0 554 1 1224 182 89 34 chr3 38356454 38356619 -189167959 + MER39B LTR ERV1 553 707 0 403 324 138 28 chr3 38356675 38357002 -189167576 - L1ME LINE L1 -433 5733 5371 1241 237 116 15 chr3 38357043 38357448 -189167130 - MER39 LTR ERV1 0 707 262 423 212 68 61 chr3 38357427 38357559 -189167019 - MER39 LTR ERV1 -574 133 1 * 1241 208 39 48 chr3 38357654 38358010 -189166568 - MER39 LTR ERV1 -30 677 325 24 32 0 0 chr3 38358677 38358708 -189165870 + AT_rich Low_complexity Low_complexity 1 31 0 274 267 69 22 chr3 38359016 38359159 -189165419 - L1ME LINE L1 -292 5874 5726 460 195 25 17 chr3 38359488 38359606 -189164972 + L1ME LINE L1 4639 4757 -1389 811 155 5 77 chr3 38359695 38359750 -189164828 - MER67C LTR ERV1 -20 690 633 2047 139 3 13 chr3 38359750 38360059 -189164519 + AluSx SINE Alu 1 306 -6 811 155 5 77 chr3 38360059 38360210 -189164368 - MER67C LTR ERV1 -77 633 499 757 236 88 36 chr3 38360211 38360575 -189164003 - MER67C LTR ERV1 -324 386 4 1272 209 56 17 chr3 38360588 38361130 -189163448 + L1ME LINE L1 4873 5437 -727 6134 183 37 20 chr3 38361138 38361353 -189163225 + L1M4c LINE L1 21 231 -6153 2200 147 0 12 chr3 38361353 38361694 -189162884 + MER1B DNA MER1_type 1 337 0 6134 183 37 20 chr3 38361694 38362809 -189161769 + L1M4c LINE L1 231 1373 -5011 1280 219 121 14 chr3 38362806 38363020 -189161558 + L1MD3 LINE L1 6887 7077 -918 * 2213 102 0 20 chr3 38363020 38363325 -189161253 + AluSg SINE Alu 1 299 -11 1280 219 121 14 chr3 38363325 38363466 -189161112 + L1MD3 LINE L1 7077 7280 -715 317 197 14 0 chr3 38363467 38363538 -189161040 + MLT1F1 LTR MaLR 3 74 -493 634 161 0 8 chr3 38363541 38363659 -189160919 + L1MD3 LINE L1 7374 7490 -505 2095 229 16 63 chr3 38363680 38364300 -189160278 - L1MEc LINE L1 -5754 642 52 23 54 0 0 chr3 38364445 38364482 -189160096 + AT_rich Low_complexity Low_complexity 1 37 0 2116 86 0 4 chr3 38367210 38367477 -189157101 + AluY SINE Alu 1 266 -45 23 33 0 0 chr3 38367755 38367785 -189156793 + AT_rich Low_complexity Low_complexity 1 30 0 236 350 29 44 chr3 38367876 38368013 -189156565 - L2 LINE L2 -213 3059 2925 246 183 0 99 chr3 38368262 38368333 -189156245 + MER110A LTR ERV1 102 165 -303 508 271 127 0 chr3 38368385 38368606 -189155972 + MER110 LTR ERV1 148 396 -95 999 298 57 51 chr3 38368692 38369198 -189155380 - L2 LINE L2 -554 2760 2252 781 295 45 8 chr3 38369444 38369688 -189154890 + MIR SINE MIR 7 259 -3 830 285 100 21 chr3 38371032 38371421 -189153157 + LTR16C LTR ERVL 71 490 -1 2451 299 70 17 chr3 38371758 38373074 -189151504 + L2 LINE L2 1921 3313 0 216 0 0 0 chr3 38373610 38373634 -189150944 + (CA)n Simple_repeat Simple_repeat 2 25 0 318 253 22 22 chr3 38374193 38374284 -189150294 - L1MC4 LINE L1 -1334 6708 6618 302 311 0 19 chr3 38374210 38374316 -189150262 + L1MC4 LINE L1 6615 6718 -1324 * 306 125 0 0 chr3 38374520 38374568 -189150010 + (TA)n Simple_repeat Simple_repeat 1 48 0 1202 147 5 11 chr3 38374837 38375027 -189149551 - MER5A DNA MER1_type 0 189 1 403 286 112 0 chr3 38375678 38375839 -189148739 - MIR SINE MIR 0 262 84 24 67 0 0 chr3 38377803 38377848 -189146730 + AT_rich Low_complexity Low_complexity 1 45 0 210 368 0 0 chr3 38377943 38378019 -189146559 + (TG)n Simple_repeat Simple_repeat 2 77 0 1623 178 64 0 chr3 38379903 38380184 -189144394 + AluSx SINE Alu 1 299 -13 921 178 157 4 chr3 38380189 38380425 -189144153 - MER5C DNA MER1_type -1 323 52 587 81 12 0 chr3 38380705 38380791 -189143787 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 208 156 0 22 chr3 38380796 38380841 -189143737 + CT-rich Low_complexity Low_complexity 2 45 0 1264 203 81 12 chr3 38382480 38382815 -189141763 + L1ME1 LINE L1 5686 6043 -123 420 262 33 0 chr3 38383256 38383378 -189141200 - MER94 DNA DNA 0 134 9 337 271 119 13 chr3 38383444 38383595 -189140983 + MIR SINE MIR 81 247 -15 24 53 0 0 chr3 38383602 38383640 -189140938 + AT_rich Low_complexity Low_complexity 1 38 0 222 330 37 18 chr3 38384227 38384336 -189140242 + MER5A DNA MER1_type 69 179 -10 392 321 52 24 chr3 38385344 38385556 -189139022 + MER20 DNA MER1_type 1 218 -1 1058 209 40 8 chr3 38387860 38388113 -189136465 - MLT1B LTR MaLR -3 387 127 1781 159 28 60 chr3 38388116 38388551 -189136027 - MER61C LTR ERV1 0 434 14 255 204 0 0 chr3 38388523 38388572 -189136006 - LTR28 LTR ERV1 -963 57 9 * 650 186 8 0 chr3 38388570 38388694 -189135884 - MLT1B LTR MaLR -265 125 1 2752 203 24 70 chr3 38389004 38389545 -189135033 - MER72 LTR ERV1 0 722 224 2089 136 3 0 chr3 38389545 38389847 -189134731 + AluSx SINE Alu 1 303 -9 2752 203 24 70 chr3 38389847 38390062 -189134516 - MER72 LTR ERV1 -498 224 1 22 0 0 0 chr3 38390363 38390385 -189134193 + AT_rich Low_complexity Low_complexity 1 22 0 251 213 3 14 chr3 38391746 38391835 -189132743 - L1M LINE L1 -765 5381 5293 505 131 46 19 chr3 38391940 38392199 -189132379 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 0 0 0 chr3 38392222 38392250 -189132328 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 38392250 38392279 -189132299 + (TG)n Simple_repeat Simple_repeat 2 30 0 388 337 124 8 chr3 38392346 38392613 -189131965 - L1 LINE L1 -1112 5034 4737 1228 249 159 25 chr3 38392825 38393334 -189131244 + MLT1G LTR MaLR 14 590 0 300 336 72 54 chr3 38393346 38393774 -189130804 - L1 LINE L1 -1663 4483 4048 21 0 0 0 chr3 38394785 38394806 -189129772 + AT_rich Low_complexity Low_complexity 1 21 0 712 216 59 40 chr3 38394899 38395121 -189129457 + MLT1I LTR MaLR 137 362 -47 1722 170 0 11 chr3 38395513 38395790 -189128788 + AluJo SINE Alu 26 299 -13 788 200 53 6 chr3 38395790 38395960 -189128618 - MER58A DNA MER1_type -29 195 18 222 282 200 9 chr3 38396101 38396211 -189128367 + MIR SINE MIR 119 249 -13 258 193 0 0 chr3 38396986 38397043 -189127535 + C-rich Low_complexity Low_complexity 5 61 0 1657 172 19 16 chr3 38397043 38397351 -189127227 - AluSx SINE Alu -3 309 1 207 370 7 44 chr3 38397366 38397501 -189127077 + MER5A DNA MER1_type 56 185 -4 197 271 71 14 chr3 38398234 38398304 -189126274 + L2 LINE L2 108 181 -3133 195 42 0 0 chr3 38398666 38398690 -189125888 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 304 250 23 0 chr3 38401320 38401408 -189123170 - MER94 DNA DNA -41 93 4 26 0 0 0 chr3 38404043 38404069 -189120509 + AT_rich Low_complexity Low_complexity 1 26 0 299 237 0 0 chr3 38406754 38406813 -189117765 + L2 LINE L2 3255 3313 0 261 329 86 14 chr3 38407312 38407452 -189117126 + MIR SINE MIR 98 247 -15 1195 240 55 44 chr3 38407476 38407860 -189116718 + MLT1H LTR MaLR 1 388 -161 231 281 170 33 chr3 38408990 38409143 -189115435 - MIR SINE MIR -10 252 79 361 194 0 74 chr3 38409572 38409680 -189114898 + MIR SINE MIR 152 251 -11 201 62 94 0 chr3 38412964 38412996 -189111582 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 3234 108 98 10 chr3 38413537 38414131 -189110447 - L1MA1 LINE L1 0 6302 5657 673 163 78 114 chr3 38414215 38414275 -189110303 - Tigger5 DNA MER2_type -3 2320 2259 2085 101 0 18 chr3 38414275 38414561 -189110017 + AluY SINE Alu 1 281 -30 673 163 78 114 chr3 38414561 38414745 -189109833 - Tigger5 DNA MER2_type -64 2259 2085 251 182 73 18 chr3 38416745 38416800 -189107778 + L2 LINE L2 3244 3301 -12 811 181 21 0 chr3 38417702 38417846 -189106732 + MER45A DNA AcHobo 1 147 -31 730 244 29 6 chr3 38418463 38418635 -189105943 + MER45A DNA AcHobo 1 176 -2 348 357 61 24 chr3 38418641 38418854 -189105724 - MIR SINE MIR -40 222 2 676 261 5 48 chr3 38419156 38419363 -189105215 - MIR SINE MIR 0 262 65 312 296 108 17 chr3 38419438 38419614 -189104964 + L1ME LINE L1 4640 4831 -1315 306 333 63 48 chr3 38419666 38419918 -189104660 + L1ME LINE L1 4918 5173 -973 326 201 132 42 chr3 38420345 38420489 -189104089 + L1ME LINE L1 5624 5780 -341 255 238 16 16 chr3 38420692 38420755 -189103823 + GA-rich Low_complexity Low_complexity 2 64 0 637 238 21 96 chr3 38422105 38422386 -189102192 + MER102a DNA MER1_type 68 327 -3 2102 126 0 3 chr3 38424751 38425044 -189099534 + AluSg SINE Alu 1 292 -18 444 286 196 8 chr3 38425823 38426078 -189098500 - L1ME LINE L1 -335 5786 5484 1517 305 86 19 chr3 38426247 38426981 -189097597 + MER20B DNA MER1_type 1 783 0 1800 121 53 7 chr3 38427971 38428252 -189096326 + AluSx SINE Alu 1 294 -18 363 305 140 74 chr3 38428939 38429333 -189095245 + L2 LINE L2 2842 3261 -11 183 313 30 121 chr3 38430973 38431139 -189093439 - MER5A DNA MER1_type -4 185 35 315 65 0 0 chr3 38431715 38431761 -189092817 - MADE1 DNA Mariner -34 46 1 785 265 44 116 chr3 38431904 38432726 -189091852 + LTR41 LTR ERVL 1 763 -10 285 336 50 17 chr3 38433430 38433549 -189091029 + L3 LINE CR1 255 377 -1200 198 293 53 13 chr3 38433611 38433686 -189090892 + L3 LINE CR1 804 881 -696 407 294 131 32 chr3 38433769 38433990 -189090588 + MIR SINE MIR 20 262 0 276 348 107 0 chr3 38434032 38434144 -189090434 + L3 LINE CR1 1028 1151 -426 536 331 163 27 chr3 38434223 38435076 -189089502 - L2 LINE L2 -443 2871 1903 449 283 113 25 chr3 38435167 38435326 -189089252 + L3 LINE CR1 1385 1557 -20 221 136 0 45 chr3 38435692 38435736 -189088842 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 525 290 91 100 chr3 38436519 38437258 -189087320 + L2 LINE L2 2590 3309 -4 2115 113 36 0 chr3 38437273 38437574 -189087004 - AluSp SINE Alu -1 312 1 216 0 0 0 chr3 38438681 38438705 -189085873 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1780 115 59 0 chr3 38438820 38439106 -189085472 + L1PA10 LINE L1 5866 6168 0 288 307 14 7 chr3 38439362 38439502 -189085076 + L1MC4a LINE L1 5590 5730 -391 241 259 0 0 chr3 38440055 38440140 -189084438 + L1M2 LINE L1 5348 5432 -868 12373 142 60 11 chr3 38440145 38442444 -189082134 - Tigger1 DNA MER2_type -1 2417 6 303 295 121 36 chr3 38442707 38442873 -189081705 + L1MC4a LINE L1 5721 5900 -1908 1098 161 21 5 chr3 38443578 38443771 -189080807 - MER1B DNA MER1_type -101 196 1 236 250 0 56 chr3 38443956 38444028 -189080550 - L2 LINE L2 -4 3309 3242 253 371 95 53 chr3 38444170 38444453 -189080125 - L2 LINE L2 -1 3271 2977 223 331 22 63 chr3 38444637 38444813 -189079765 + MIR SINE MIR 25 197 -56 2018 117 0 11 chr3 38445437 38445720 -189078858 + AluSx SINE Alu 1 280 -32 229 338 13 0 chr3 38445812 38445889 -189078689 + GA-rich Low_complexity Low_complexity 5 82 0 2220 107 0 7 chr3 38445904 38446202 -189078376 + AluSx SINE Alu 1 296 -16 274 190 0 0 chr3 38448073 38448131 -189076447 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 505 235 28 116 chr3 38449265 38449507 -189075071 + MER112 DNA MER1_type 1 216 -44 315 261 56 67 chr3 38449507 38449687 -189074891 + MER5B DNA MER1_type 1 178 0 505 235 28 116 chr3 38449687 38449729 -189074849 + MER112 DNA MER1_type 216 260 0 2140 153 49 0 chr3 38450050 38450397 -189074181 - THE1B LTR MaLR 0 364 1 231 339 9 18 chr3 38450604 38450716 -189073862 + GA-rich Low_complexity Low_complexity 1 111 0 380 338 55 46 chr3 38451788 38452025 -189072553 - MIR SINE MIR -11 251 13 916 233 40 0 chr3 38452165 38452367 -189072211 - MER58A DNA MER1_type -12 212 3 1653 122 0 13 chr3 38452499 38452728 -189071850 + AluSg/x SINE Alu 71 296 -14 619 289 16 11 chr3 38453607 38453797 -189070781 + MIR SINE MIR 14 204 -58 254 268 33 98 chr3 38453945 38454098 -189070480 - L2 LINE L2 -189 3083 2941 2274 110 10 0 chr3 38454282 38454591 -189069987 - AluSx SINE Alu 0 312 1 2485 122 8 3 chr3 38455457 38455819 -189068759 + THE1B LTR MaLR 1 364 0 1817 174 3 14 chr3 38456043 38456337 -189068241 + AluJb SINE Alu 1 291 -21 393 287 77 35 chr3 38456447 38456590 -189067988 - MLT1L LTR MaLR -221 394 246 290 206 96 0 chr3 38456674 38456747 -189067831 - MLT1L LTR MaLR -531 84 5 492 242 0 23 chr3 38456756 38456884 -189067694 + MER103 DNA DNA 42 166 0 484 254 159 48 chr3 38459119 38459308 -189065270 - MER63A DNA MER1_type 0 210 1 606 360 100 18 chr3 38460086 38460586 -189063992 + MLT1K LTR MaLR 38 578 -10 482 328 27 55 chr3 38460684 38460977 -189063601 + MLT1H LTR MaLR 38 322 -227 668 270 144 0 chr3 38461164 38461378 -189063200 - MIR SINE MIR 0 262 25 216 61 20 41 chr3 38461389 38461438 -189063140 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 26 0 0 0 chr3 38461559 38461585 -189062993 + AT_rich Low_complexity Low_complexity 1 26 0 2076 112 25 34 chr3 38461991 38462349 -189062229 - THE1A LTR MaLR 0 355 1 11120 96 30 4 chr3 38462349 38463888 -189060690 - THE1A-int LTR MaLR 0 1580 1 2195 109 26 11 chr3 38463890 38464238 -189060340 - THE1A LTR MaLR -2 353 1 211 286 0 0 chr3 38464428 38464477 -189060101 + L2 LINE L2 3219 3267 -5 411 68 0 0 chr3 38464545 38464604 -189059974 + (CA)n Simple_repeat Simple_repeat 2 60 0 249 33 0 0 chr3 38464603 38464633 -189059945 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 1425 214 30 3 chr3 38465778 38466073 -189058505 + AluJb SINE Alu 1 303 -9 327 264 43 68 chr3 38467056 38467219 -189057359 - MLT1K LTR MaLR -52 536 378 769 182 43 32 chr3 38468560 38468747 -189055831 - MER53 DNA DNA 0 189 1 23 0 0 0 chr3 38469723 38469746 -189054832 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 38470555 38470587 -189053991 + AT_rich Low_complexity Low_complexity 1 32 0 5639 30 0 10 chr3 38470655 38471333 -189053245 + L1PA3 LINE L1 5485 6155 0 402 216 131 57 chr3 38471351 38471527 -189053051 + L1MC5 LINE L1 7725 7913 -48 612 299 99 30 chr3 38473859 38474464 -189050114 + L1MEd LINE L1 970 1676 -4634 874 260 86 35 chr3 38474474 38474928 -189049650 + L1ME3A LINE L1 5679 6155 -15 1804 124 4 7 chr3 38475648 38475923 -189048655 + L1PA8 LINE L1 5879 6152 -20 397 264 82 89 chr3 38479749 38480029 -189044549 - L2 LINE L2 -52 3261 2984 1101 221 213 22 chr3 38480089 38480446 -189044132 + MER39 LTR ERV1 260 684 -23 1114 355 101 29 chr3 38480447 38481368 -189043210 + L2 LINE L2 1980 2966 -348 262 318 83 32 chr3 38481418 38481635 -189042943 - MLT1L LTR MaLR -10 605 378 290 273 45 64 chr3 38481912 38482022 -189042556 + L2 LINE L2 3171 3278 -35 211 277 36 24 chr3 38482633 38482716 -189041862 + MIR SINE MIR 42 125 -83 190 267 0 0 chr3 38484553 38484598 -189039980 - L2 LINE L2 -89 3224 3180 282 327 115 19 chr3 38485031 38485187 -189039391 - MIR SINE MIR -43 219 49 285 272 62 0 chr3 38485550 38485631 -189038947 + MER96 DNA MER1_type? 5 90 -85 206 304 0 14 chr3 38486513 38486582 -189037996 - MIR SINE MIR 0 262 195 27 29 0 0 chr3 38488232 38488266 -189036312 + AT_rich Low_complexity Low_complexity 1 34 0 344 280 140 20 chr3 38488535 38488685 -189035893 - MIR3 SINE MIR -6 202 35 1329 222 64 124 chr3 38491447 38492467 -189032111 + L1MC5 LINE L1 6946 7903 -58 243 200 20 0 chr3 38492532 38492582 -189031996 + GA-rich Low_complexity Low_complexity 3 53 0 189 0 0 0 chr3 38492813 38492834 -189031744 + (A)n Simple_repeat Simple_repeat 1 21 0 2095 114 0 7 chr3 38493249 38493546 -189031032 - AluSg SINE Alu -15 295 1 678 289 22 26 chr3 38494603 38494831 -189029747 + MIR SINE MIR 7 233 -29 975 274 31 42 chr3 38498842 38499199 -189025379 + MLT1H LTR MaLR 2 354 -195 553 238 40 8 chr3 38499344 38499470 -189025108 - MIR SINE MIR -122 140 11 207 0 0 0 chr3 38499527 38499550 -189025028 + (TG)n Simple_repeat Simple_repeat 2 24 0 1110 295 45 26 chr3 38501484 38501908 -189022670 + LTR16A LTR ERVL 19 450 0 2135 125 3 0 chr3 38502223 38502511 -189022067 + AluSg1 SINE Alu 1 289 -20 965 330 127 43 chr3 38502862 38503203 -189021375 + L2 LINE L2 1783 2094 -1219 610 276 0 17 chr3 38503203 38503384 -189021194 - MER5B DNA MER1_type 0 178 1 965 330 127 43 chr3 38503384 38504405 -189020173 + L2 LINE L2 2094 3264 -49 1201 242 47 22 chr3 38504789 38505153 -189019425 + L1ME3 LINE L1 5790 6162 0 193 417 18 41 chr3 38507193 38507411 -189017167 - L2 LINE L2 -84 3188 2976 1243 283 73 28 chr3 38507577 38508221 -189016357 + L2 LINE L2 2636 3313 0 1113 316 147 27 chr3 38508229 38509232 -189015346 - L2 LINE L2 -482 2832 1710 863 214 83 42 chr3 38509324 38509660 -189014918 + L1ME1 LINE L1 5807 6156 -10 229 405 30 15 chr3 38510258 38510389 -189014189 + L2 LINE L2 3139 3271 -1 21 0 0 0 chr3 38510473 38510494 -189014084 + AT_rich Low_complexity Low_complexity 1 21 0 758 240 120 14 chr3 38510774 38510982 -189013596 + MIR SINE MIR 13 242 -20 261 118 0 0 chr3 38513018 38513069 -189011509 + (CA)n Simple_repeat Simple_repeat 1 51 0 844 280 64 57 chr3 38514757 38515275 -189009303 + L2 LINE L2 2521 3165 -148 198 0 0 0 chr3 38515275 38515297 -189009281 + (TA)n Simple_repeat Simple_repeat 2 23 0 844 280 64 57 chr3 38515297 38515447 -189009131 + L2 LINE L2 3165 3312 -1 317 224 26 0 chr3 38516048 38516124 -189008454 + MIR SINE MIR 180 257 -5 1920 157 0 3 chr3 38516168 38516454 -189008124 + AluSx SINE Alu 3 287 -25 295 277 64 0 chr3 38516985 38517079 -189007499 + MIR SINE MIR 42 141 -67 336 102 0 0 chr3 38517411 38517460 -189007118 + (TA)n Simple_repeat Simple_repeat 1 49 0 594 177 126 69 chr3 38517466 38517641 -189006937 - MIR SINE MIR -20 242 58 310 328 228 16 chr3 38518157 38518407 -189006171 - L3 LINE CR1 -289 1288 986 489 295 106 32 chr3 38518423 38518640 -189005938 + MIR SINE MIR 28 260 -2 290 286 75 53 chr3 38518634 38518767 -189005811 - L3 LINE CR1 -577 1000 865 * 21 0 0 0 chr3 38519010 38519031 -189005547 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 38519613 38519634 -189004944 + AT_rich Low_complexity Low_complexity 1 21 0 224 246 31 15 chr3 38519945 38520010 -189004568 - L2 LINE L2 -188 3084 3019 1305 316 92 27 chr3 38520020 38520901 -189003677 - L2 LINE L2 0 3313 2374 342 0 0 0 chr3 38521033 38521071 -189003507 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 283 172 29 chr3 38521114 38521358 -189003220 - L2 LINE L2 -446 2868 2590 909 250 22 71 chr3 38523200 38523468 -189001110 - MIR SINE MIR 0 262 8 242 330 21 0 chr3 38524675 38524772 -188999806 - MIR SINE MIR 0 262 164 465 287 112 53 chr3 38524921 38525315 -188999263 - MLT1H LTR MaLR -125 424 8 286 296 112 0 chr3 38525731 38525829 -188998749 + MLT2E LTR ERVL 120 228 -400 736 265 31 14 chr3 38525884 38526107 -188998471 + MLT2E LTR ERVL 362 588 -40 646 299 27 5 chr3 38526117 38526304 -188998274 - MIR SINE MIR -61 201 11 353 222 0 0 chr3 38526365 38526437 -188998141 + MER63 DNA MER1_type 672 743 -319 768 313 25 28 chr3 38526599 38526919 -188997659 + LTR16C LTR ERVL 53 371 -120 447 262 73 68 chr3 38526991 38527197 -188997381 - MIR SINE MIR -3 259 53 3077 221 46 10 chr3 38528158 38529664 -188994914 - L1MB2 LINE L1 -88 6083 4526 28 29 0 0 chr3 38530467 38530502 -188994076 + AT_rich Low_complexity Low_complexity 1 35 0 1151 114 29 48 chr3 38530539 38530638 -188993940 - MER2 DNA MER2_type -139 206 107 2532 108 11 3 chr3 38530638 38530999 -188993579 + THE1B LTR MaLR 1 364 0 1151 114 29 48 chr3 38530999 38531109 -188993469 - MER2 DNA MER2_type -238 107 1 242 239 68 17 chr3 38531112 38531229 -188993349 + L1MB8 LINE L1 6056 6178 0 252 216 144 45 chr3 38532907 38533018 -188991560 - MIR SINE MIR -21 241 120 49 18 0 0 chr3 38533808 38533864 -188990714 + AT_rich Low_complexity Low_complexity 1 56 0 742 205 0 0 chr3 38533864 38533991 -188990587 - AluJb SINE Alu -185 127 1 348 219 56 124 chr3 38535032 38535210 -188989368 - MIR SINE MIR -45 217 52 2318 138 60 29 chr3 38535326 38535739 -188988839 + MSTC LTR MaLR 1 426 -2 235 182 164 36 chr3 38535780 38535890 -188988688 + L1MC5 LINE L1 7407 7530 -431 1180 208 14 1 chr3 38535978 38536290 -188988288 + MER2 DNA MER2_type 1 345 0 286 225 58 75 chr3 38536298 38536418 -188988160 + L1ME3 LINE L1 5965 6082 -80 1248 121 261 75 chr3 38537113 38537420 -188987158 - THE1B LTR MaLR 0 364 1 401 273 94 47 chr3 38538350 38538478 -188986100 - L2 LINE L2 -5 3267 3134 340 250 172 0 chr3 38538944 38539060 -188985518 - MIR SINE MIR -25 237 102 270 0 0 0 chr3 38539117 38539147 -188985431 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 24 0 0 0 chr3 38539729 38539753 -188984825 + AT_rich Low_complexity Low_complexity 1 24 0 2240 95 7 7 chr3 38540935 38541240 -188983338 - AluSx SINE Alu -7 305 1 1627 133 101 3 chr3 38541347 38541663 -188982915 - L1MA6 LINE L1 -2 6298 5952 288 263 11 53 chr3 38542405 38542500 -188982078 - MIR SINE MIR -12 250 160 198 0 0 0 chr3 38543332 38543354 -188981224 + (TG)n Simple_repeat Simple_repeat 1 22 0 5962 138 60 41 chr3 38544095 38544613 -188979965 - Tigger3b DNA MER2_type -1797 1231 725 2257 76 7 10 chr3 38544613 38544902 -188979676 + AluY SINE Alu 1 288 -23 5962 138 60 41 chr3 38544902 38545590 -188978988 - Tigger3b DNA MER2_type -2303 725 1 456 340 98 9 chr3 38546157 38546372 -188978206 - MIR SINE MIR -27 235 2 2229 113 0 0 chr3 38546575 38546867 -188977711 + AluSc SINE Alu 1 292 -17 495 0 0 0 chr3 38547887 38547942 -188976636 + (TG)n Simple_repeat Simple_repeat 1 55 0 250 254 32 0 chr3 38547958 38548021 -188976557 - MLT1L LTR MaLR -550 65 1 575 95 0 21 chr3 38548708 38548803 -188975775 - L1PA7 LINE L1 0 6154 6062 242 313 203 2 chr3 38549066 38549259 -188975319 - MIR SINE MIR -25 237 5 196 241 69 0 chr3 38549442 38549500 -188975078 - L2 LINE L2 -3 3310 3249 454 331 128 3 chr3 38549676 38549972 -188974606 - MLT1I LTR MaLR -7 402 70 649 225 75 40 chr3 38550128 38550328 -188974250 + MIR SINE MIR 47 253 -9 259 299 127 64 chr3 38550338 38550804 -188973774 - L2 LINE L2 -275 3038 2547 363 283 18 9 chr3 38551494 38551607 -188972971 + MER5C DNA MER1_type 4 117 -207 919 196 50 0 chr3 38551607 38551806 -188972772 - MER20 DNA MER1_type -10 209 1 375 177 257 17 chr3 38551807 38551982 -188972596 + MER5C DNA MER1_type 108 324 0 453 259 125 28 chr3 38552329 38552545 -188972033 + MER102a DNA MER1_type 2 238 -92 329 328 165 53 chr3 38553125 38554393 -188970185 - L2 LINE L2 -15 3257 1781 3801 122 51 8 chr3 38554393 38555002 -188969576 - MER41B LTR ERV1 0 635 1 329 328 165 53 chr3 38555002 38555195 -188969383 - L2 LINE L2 -1491 1781 1611 230 309 27 40 chr3 38555322 38555471 -188969107 + MER5A DNA MER1_type 7 153 -36 946 256 14 5 chr3 38555510 38555729 -188968849 + MIR SINE MIR 31 251 -11 283 331 22 36 chr3 38555763 38555902 -188968676 - MER5A DNA MER1_type -1 188 52 2462 71 0 0 chr3 38556126 38556420 -188968158 - AluY SINE Alu -17 294 1 579 288 79 22 chr3 38557166 38557395 -188967183 + MER102a DNA MER1_type 3 244 -86 498 268 55 0 chr3 38557399 38557526 -188967052 + MIR SINE MIR 104 237 -25 235 235 62 62 chr3 38557526 38557607 -188966971 + MER102a DNA MER1_type 250 330 0 1178 293 65 18 chr3 38558090 38558582 -188965996 + LTR33 LTR ERVL 5 519 -2 747 224 36 49 chr3 38559038 38559261 -188965317 + MER33 DNA MER1_type 8 227 -97 337 316 65 0 chr3 38559995 38560134 -188964444 + MIR SINE MIR 105 252 -10 2119 189 64 35 chr3 38560388 38560870 -188963708 - MLT1D LTR MaLR 0 505 10 231 209 0 0 chr3 38561060 38561103 -188963475 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 293 280 152 56 chr3 38561104 38561229 -188963349 - L2 LINE L2 0 3272 3136 434 186 9 200 chr3 38561434 38561575 -188963003 - MER5B DNA MER1_type 0 178 12 2511 62 13 0 chr3 38561575 38561881 -188962697 - AluY SINE Alu -1 310 1 434 186 9 200 chr3 38561881 38561918 -188962660 - MER5B DNA MER1_type -166 12 46 1724 176 7 13 chr3 38561918 38562224 -188962354 - AluJb SINE Alu -8 304 1 434 186 9 200 chr3 38562224 38562264 -188962314 - MER5B DNA MER1_type -131 47 1 421 236 76 37 chr3 38562581 38562770 -188961808 + MIR SINE MIR 49 241 -21 276 263 8 4 chr3 38562897 38563002 -188961576 + MLT1H LTR MaLR 24 169 -380 2067 165 52 10 chr3 38563004 38563411 -188961167 + L1MA3 LINE L1 5869 6292 -13 598 271 99 73 chr3 38563431 38563856 -188960722 + MLT1H1 LTR MaLR 114 549 -6 331 248 136 30 chr3 38563953 38564151 -188960427 - MLT1F LTR MaLR -323 219 1 533 142 61 101 chr3 38564748 38564896 -188959682 - L1MC2 LINE L1 -9 6335 6194 999 163 0 6 chr3 38564900 38565060 -188959518 + AluJo SINE Alu 23 181 -131 1017 158 0 0 chr3 38565068 38565220 -188959358 + AluJo SINE Alu 157 308 -4 751 236 55 10 chr3 38565225 38565424 -188959154 - L1MC2 LINE L1 -125 6219 6012 239 138 92 62 chr3 38565428 38565493 -188959085 + HsTC2 DNA Tc2 25 91 -1807 202 200 0 43 chr3 38565510 38565580 -188958998 + CT-rich Low_complexity Low_complexity 3 69 0 489 278 116 68 chr3 38565812 38565854 -188958724 + MLT1L LTR MaLR 42 81 -534 886 286 116 37 chr3 38565854 38566337 -188958241 + LTR33 LTR ERVL 1 521 0 489 278 116 68 chr3 38566337 38566647 -188957931 + MLT1L LTR MaLR 81 411 -204 327 238 49 0 chr3 38567263 38567360 -188957218 - MIR SINE MIR -61 201 100 1687 170 69 7 chr3 38567767 38568102 -188956476 + MER47B DNA MER2_type 1 418 0 1861 187 124 134 chr3 38568458 38569408 -188955170 + LTR1B LTR ERV1 1 1020 0 576 342 42 0 chr3 38569612 38569852 -188954726 - MIR SINE MIR -12 250 1 43 20 0 0 chr3 38570017 38570067 -188954511 + AT_rich Low_complexity Low_complexity 1 50 0 1179 243 89 40 chr3 38570332 38570736 -188953842 - MLT1H LTR MaLR 0 549 126 24 32 0 0 chr3 38570853 38570884 -188953694 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 38570898 38570921 -188953657 + AT_rich Low_complexity Low_complexity 1 23 0 2469 44 40 0 chr3 38571720 38572017 -188952561 + AluY SINE Alu 1 309 -2 226 293 303 7 chr3 38572518 38572805 -188951773 + L3 LINE CR1 432 803 -774 596 259 28 75 chr3 38572830 38573021 -188951557 + L1MC5 LINE L1 7522 7690 -271 1575 185 14 14 chr3 38573021 38573307 -188951271 + AluJo SINE Alu 3 288 -24 596 259 28 75 chr3 38573307 38573474 -188951104 + L1MC5 LINE L1 7690 7863 -98 367 197 0 0 chr3 38573530 38573591 -188950987 + MLT1A1 LTR MaLR 117 177 -188 283 291 191 9 chr3 38574497 38574607 -188949971 - MIR3 SINE MIR -41 167 38 724 307 92 28 chr3 38574728 38575119 -188949459 + LTR33A LTR ERVL 99 514 -9 27 49 0 0 chr3 38575552 38575593 -188948985 + AT_rich Low_complexity Low_complexity 1 41 0 252 244 53 26 chr3 38575599 38575733 -188948845 + L1MDa LINE L1 2492 2637 -3903 240 315 27 13 chr3 38575745 38575894 -188948684 + L1M4 LINE L1 4418 4568 -1578 2073 134 0 0 chr3 38576240 38576547 -188948031 - AluSx SINE Alu 0 307 1 1589 115 133 44 chr3 38576884 38577154 -188947424 + AluSg SINE Alu 1 294 -16 561 344 113 26 chr3 38577229 38577723 -188946855 + HAL1b LINE L1 72 608 -740 7229 68 16 6 chr3 38577943 38579045 -188945533 + L1PA8 LINE L1 5059 6170 -2 2689 129 2 15 chr3 38580256 38580650 -188943928 - MLT1B LTR MaLR -1 389 1 350 281 96 22 chr3 38580867 38581179 -188943399 - L1MC4a LINE L1 -401 5720 5593 2419 102 0 3 chr3 38581195 38581508 -188943070 - AluSx SINE Alu 0 312 1 257 250 38 38 chr3 38581508 38581588 -188942990 - L1MC4a LINE L1 -553 5617 5538 204 361 115 0 chr3 38581597 38581719 -188942859 - MIR SINE MIR -113 149 14 921 185 12 0 chr3 38583032 38583205 -188941373 - FRAM SINE Alu -5 171 1 247 326 152 0 chr3 38583249 38583381 -188941197 - MIR SINE MIR -108 154 3 293 311 61 34 chr3 38583466 38583614 -188940964 + MER117 DNA MER1_type 46 197 0 186 43 0 0 chr3 38583860 38583883 -188940695 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6127 156 18 17 chr3 38583883 38585795 -188938783 - L1PB1 LINE L1 -10 6857 4951 18029 139 45 2 chr3 38585905 38589358 -188935220 - L1PB1 LINE L1 -3265 3597 1 1539 203 0 23 chr3 38589571 38589876 -188934702 - AluJo SINE Alu -8 304 7 1734 169 54 0 chr3 38589898 38590194 -188934384 - AluSx SINE Alu 0 312 1 906 173 0 13 chr3 38590609 38590759 -188933819 + FRAM SINE Alu 6 153 -23 261 0 0 0 chr3 38591039 38591068 -188933510 + (A)n Simple_repeat Simple_repeat 1 29 0 639 267 27 59 chr3 38591095 38591316 -188933262 + LTR16A1 LTR ERVL 197 410 -47 826 182 44 11 chr3 38591807 38591988 -188932590 + LTR41 LTR ERVL 1 187 -586 370 324 46 12 chr3 38592860 38593031 -188931547 - MIR SINE MIR -45 217 38 206 280 196 60 chr3 38593699 38594031 -188930547 + L2 LINE L2 2882 3258 -14 685 303 53 0 chr3 38594288 38594532 -188930046 - MIR SINE MIR 0 262 6 4424 133 38 6 chr3 38594640 38595354 -188929224 + L1PB4 LINE L1 5418 6154 -2 669 340 77 46 chr3 38596201 38596589 -188927989 + L3 LINE CR1 412 811 -766 474 325 34 19 chr3 38596873 38597079 -188927499 - MIR SINE MIR 0 262 54 195 299 106 82 chr3 38597169 38597376 -188927202 + L3 LINE CR1 1077 1288 -289 379 243 89 42 chr3 38597389 38597555 -188927023 - MLT1G1 LTR MaLR 0 555 370 1202 215 73 63 chr3 38597555 38597951 -188926627 - MER39 LTR ERV1 -1 706 307 240 237 0 34 chr3 38597934 38597993 -188926585 - MER34 LTR ERV1 -419 123 67 * 647 263 26 78 chr3 38598092 38598362 -188926216 - MLT1G1 LTR MaLR -339 256 1 198 289 74 30 chr3 38598363 38598498 -188926080 + L3 LINE CR1 1246 1386 -191 22 56 0 0 chr3 38598698 38598734 -188925844 + AT_rich Low_complexity Low_complexity 1 36 0 306 281 12 12 chr3 38600193 38600275 -188924303 - MIR3 SINE MIR -9 199 118 2051 140 7 0 chr3 38600606 38600899 -188923679 + AluSx SINE Alu 3 297 -15 505 242 146 42 chr3 38601237 38601402 -188923176 + MER5A DNA MER1_type 8 189 0 483 285 97 5 chr3 38601666 38601852 -188922726 - MIR SINE MIR -1 261 59 422 294 53 12 chr3 38601885 38602055 -188922523 + MER5A DNA MER1_type 7 183 -6 501 274 8 0 chr3 38602142 38602266 -188922312 - MER94 DNA DNA 0 134 10 27 0 0 0 chr3 38603211 38603238 -188921340 + AT_rich Low_complexity Low_complexity 1 27 0 1271 246 172 22 chr3 38603243 38603653 -188920925 + MLT2B1 LTR ERVL 1 485 -35 222 62 0 0 chr3 38603653 38603685 -188920893 + (CA)n Simple_repeat Simple_repeat 1 32 0 1271 246 172 22 chr3 38603685 38603722 -188920856 + MLT2B1 LTR ERVL 485 515 -5 294 308 19 39 chr3 38603926 38604030 -188920548 + LTR67 LTR ERVL 99 200 -357 260 232 58 0 chr3 38604305 38604374 -188920204 + LTR67 LTR ERVL 485 557 0 2685 112 13 16 chr3 38604557 38604933 -188919645 - THE1C LTR MaLR 0 375 1 2129 143 47 52 chr3 38605273 38605638 -188918940 - THE1B LTR MaLR 0 364 2 10953 86 60 3 chr3 38605639 38607126 -188917452 - THE1B-int LTR MaLR -6 1574 3 2320 125 48 20 chr3 38607130 38607483 -188917095 - THE1B LTR MaLR -1 363 1 575 195 231 12 chr3 38607608 38607655 -188916923 + MIR SINE MIR 2 37 -225 2628 161 29 0 chr3 38607655 38608071 -188916507 - MSTA LTR MaLR 0 428 1 575 195 231 12 chr3 38608071 38608192 -188916386 + MIR SINE MIR 37 207 -55 641 257 71 0 chr3 38608205 38608388 -188916190 - MER3 DNA MER1_type 0 209 14 636 188 6 12 chr3 38608564 38608729 -188915849 + CT-rich Low_complexity Low_complexity 1 164 0 195 281 115 52 chr3 38609592 38609688 -188914890 + MIR SINE MIR 6 107 -155 311 297 87 48 chr3 38609792 38610021 -188914557 + MLT1H LTR MaLR 116 353 -196 380 289 26 0 chr3 38611617 38611731 -188912847 + HAL1 LINE L1 776 892 -1615 512 227 67 93 chr3 38611792 38611986 -188912592 - MLT1J LTR MaLR -223 288 100 285 146 0 0 chr3 38612062 38612110 -188912468 + (CA)n Simple_repeat Simple_repeat 1 48 0 1782 261 139 23 chr3 38612118 38613286 -188911292 + HAL1 LINE L1 911 2213 -294 378 226 56 87 chr3 38613312 38613507 -188911071 + HAL1 LINE L1 2319 2507 0 2386 102 0 0 chr3 38613607 38613911 -188910667 + AluSg SINE Alu 1 304 -6 1799 163 11 3 chr3 38614165 38614448 -188910130 + AluSx SINE Alu 1 285 -27 324 125 47 16 chr3 38614741 38614805 -188909773 + L1ME2 LINE L1 5824 5889 -275 240 204 0 20 chr3 38615077 38615126 -188909452 - MIR SINE MIR -69 139 92 860 293 84 3 chr3 38616274 38616585 -188907993 - L2 LINE L2 -719 2595 2260 476 309 25 74 chr3 38616595 38616837 -188907741 - MIR SINE MIR -26 236 10 889 284 122 36 chr3 38616903 38617371 -188907207 - MLT1J LTR MaLR -2 509 2 1913 269 110 29 chr3 38617944 38618948 -188905630 + L2 LINE L2 2228 3309 -4 585 81 270 0 chr3 38618957 38619068 -188905510 - MSTA LTR MaLR -49 379 239 293 176 250 28 chr3 38619474 38619582 -188904996 + MIR SINE MIR 110 241 -21 772 232 28 43 chr3 38620122 38620333 -188904245 - MER58A DNA MER1_type 0 224 17 3095 148 27 36 chr3 38620404 38620963 -188903615 + MLT2B3 LTR ERVL 1 554 0 464 210 210 25 chr3 38621075 38621232 -188903346 - MER5A DNA MER1_type 0 189 4 231 311 112 12 chr3 38621269 38621510 -188903068 - L1MC/D LINE L1 -573 5593 5329 614 288 102 32 chr3 38621516 38622116 -188902462 - L1MC/D LINE L1 -837 5309 4668 638 231 46 50 chr3 38622122 38622404 -188902174 - L1ME3A LINE L1 0 6170 5890 * 663 234 69 65 chr3 38622400 38622690 -188901888 - L1ME3A LINE L1 -554 5608 5318 1740 148 46 23 chr3 38622764 38623069 -188901509 - AluSx SINE Alu 0 312 1 190 293 24 122 chr3 38673272 38673395 -188851183 + L2 LINE L2 2954 3064 -208 575 303 33 33 chr3 38674180 38674424 -188850154 + MIR SINE MIR 19 262 0 389 329 241 30 chr3 38674431 38674533 -188850045 + L2 LINE L2 1829 1908 -1406 1714 125 82 11 chr3 38674533 38674813 -188849765 + AluSx SINE Alu 1 300 -12 389 329 241 30 chr3 38674813 38675421 -188849157 + L2 LINE L2 1908 2689 -625 1449 67 10 0 chr3 38676032 38676225 -188848353 + L1PA5 LINE L1 5958 6152 -2 1612 134 0 0 chr3 38677303 38677527 -188847051 - AluSg/x SINE Alu -16 294 71 1027 233 67 31 chr3 38677527 38677947 -188846631 + LTR7 LTR ERV1 1 435 -15 1103 247 24 16 chr3 38678425 38678798 -188845780 + Charlie8 DNA MER1_type 310 685 -1732 421 294 32 8 chr3 38678873 38678999 -188845579 - MIR SINE MIR -64 144 16 267 152 0 0 chr3 38680058 38680104 -188844474 + CT-rich Low_complexity Low_complexity 1 46 0 431 330 75 9 chr3 38680386 38680598 -188843980 - MIR SINE MIR -35 227 2 775 296 16 12 chr3 38680707 38680960 -188843618 - MIR SINE MIR 0 262 9 22 80 0 0 chr3 38681182 38681232 -188843346 + AT_rich Low_complexity Low_complexity 1 50 0 360 0 0 0 chr3 38682169 38682238 -188842340 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 360 0 0 0 chr3 38682238 38682278 -188842300 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 2349 100 44 14 chr3 38682278 38682638 -188841940 - THE1C LTR MaLR -2 373 3 8924 126 55 42 chr3 38682640 38684200 -188840378 - THE1C-int LTR MaLR 0 1580 1 2070 131 74 8 chr3 38684200 38684552 -188840026 - THE1C LTR MaLR 0 375 1 249 174 105 58 chr3 38684596 38684682 -188839896 + L1MC4 LINE L1 6614 6703 -1339 4974 137 12 16 chr3 38684905 38685800 -188838778 + L1PA16 LINE L1 5273 6164 -2 22 35 0 0 chr3 38685950 38685979 -188838599 + AT_rich Low_complexity Low_complexity 1 29 0 259 289 277 0 chr3 38686363 38686446 -188838132 - MER5A DNA MER1_type -6 183 78 305 370 19 72 chr3 38686976 38687238 -188837340 + L2 LINE L2 3025 3272 0 944 62 78 0 chr3 38687394 38687523 -188837055 + MER85 DNA T2_type 1 139 0 1296 231 69 34 chr3 38689087 38689524 -188835054 + LTR16A1 LTR ERVL 1 452 -5 256 255 142 9 chr3 38690183 38690289 -188834289 - MIR SINE MIR -4 258 139 464 302 71 25 chr3 38690290 38690555 -188834023 - MLT1J LTR MaLR -63 535 212 500 202 25 8 chr3 38690692 38690811 -188833767 - MER94 DNA DNA -12 122 2 195 42 0 0 chr3 38691636 38691660 -188832918 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1350 231 84 3 chr3 38692281 38692627 -188831951 - MLT1A2 LTR MaLR 0 374 1 23 0 0 0 chr3 38693491 38693514 -188831064 + AT_rich Low_complexity Low_complexity 1 23 0 1746 169 38 20 chr3 38693718 38694062 -188830516 - MLT2D LTR ERVL -64 350 1 231 345 0 40 chr3 38694066 38694214 -188830364 + MER112 DNA MER1_type 119 260 0 716 275 192 28 chr3 38694669 38695163 -188829415 - MLT1G1 LTR MaLR -6 589 15 306 0 0 0 chr3 38695163 38695197 -188829381 + (A)n Simple_repeat Simple_repeat 1 34 0 473 267 41 7 chr3 38695334 38695480 -188829098 - MIR3 SINE MIR -52 156 6 1714 189 0 31 chr3 38695825 38696147 -188828431 - AluJb SINE Alu 0 312 1 526 319 59 0 chr3 38696714 38696883 -188827695 - MIR3 SINE MIR -3 205 27 726 282 67 56 chr3 38697114 38697546 -188827032 + MLT1K LTR MaLR 152 588 0 229 336 50 25 chr3 38697609 38697728 -188826850 - MIR3 SINE MIR -72 136 15 250 315 43 11 chr3 38698130 38698222 -188826356 + MIR3 SINE MIR 5 99 -109 254 169 65 13 chr3 38698321 38698398 -188826180 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 340 310 141 35 chr3 38698553 38698808 -188825770 + L2 LINE L2 2807 3088 -184 392 303 91 0 chr3 38699213 38699345 -188825233 + MIR SINE MIR 4 147 -115 405 309 19 6 chr3 38699345 38699507 -188825071 + MLT1J1 LTR MaLR 17 180 -266 1348 256 65 43 chr3 38699507 38699952 -188824626 - LTR16C LTR ERVL 0 491 37 457 279 85 40 chr3 38700026 38700227 -188824351 + MLT1J2 LTR MaLR 241 450 0 288 344 153 6 chr3 38700817 38700980 -188823598 - MIR SINE MIR -7 255 69 441 310 79 39 chr3 38701594 38701823 -188822755 - MIR SINE MIR -8 254 17 249 303 195 15 chr3 38702150 38702345 -188822233 + MIR SINE MIR 30 259 -3 2327 161 42 32 chr3 38703052 38703535 -188821043 + MLT2B2 LTR ERVL 2 534 -20 192 97 0 0 chr3 38703537 38703568 -188821010 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 219 154 0 26 chr3 38703575 38703614 -188820964 + (TG)n Simple_repeat Simple_repeat 2 39 0 429 20 0 0 chr3 38703831 38703881 -188820697 + (TA)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr3 38703884 38703904 -188820674 + (GA)n Simple_repeat Simple_repeat 2 21 0 778 249 86 81 chr3 38704046 38704606 -188819972 + MLT1G LTR MaLR 10 588 -2 227 381 26 26 chr3 38704735 38704924 -188819654 - L2 LINE L2 -174 3098 2910 432 0 0 0 chr3 38705775 38705823 -188818755 + (CA)n Simple_repeat Simple_repeat 2 49 0 1074 223 48 65 chr3 38705900 38706272 -188818306 - MLT1A2 LTR MaLR -8 366 1 269 197 14 0 chr3 38706978 38707049 -188817529 + GA-rich Low_complexity Low_complexity 3 74 0 412 264 19 0 chr3 38707725 38707831 -188816747 - MIR SINE MIR -2 260 153 1972 209 26 38 chr3 38707831 38708334 -188816244 + MLT1D LTR MaLR 7 503 -2 357 263 11 32 chr3 38708335 38708430 -188816148 - MIR SINE MIR -108 154 62 458 300 115 10 chr3 38708550 38708750 -188815828 - MIR SINE MIR -1 261 41 317 242 28 99 chr3 38709291 38709473 -188815105 - MLT1H LTR MaLR -204 345 177 210 211 211 0 chr3 38710639 38710691 -188813887 + MIR SINE MIR 90 152 -56 240 266 38 13 chr3 38711088 38711167 -188813411 - MLT1J1 LTR MaLR -294 152 72 2020 128 0 16 chr3 38711411 38711716 -188812862 - AluSx SINE Alu -12 300 1 319 290 19 9 chr3 38711926 38712033 -188812545 + L1ME4a LINE L1 5554 5661 -460 637 151 0 0 chr3 38712044 38712137 -188812441 - FRAM SINE Alu -25 151 59 995 263 75 36 chr3 38712300 38712833 -188811745 + L1MC4 LINE L1 7488 8041 -1 366 278 139 32 chr3 38712883 38713099 -188811479 + L1ME4a LINE L1 5879 6117 -4 215 318 19 37 chr3 38714464 38714571 -188810007 + L2 LINE L2 1359 1463 -1851 1169 266 88 146 chr3 38714693 38714874 -188809704 + L2 LINE L2 1707 1897 -1416 2516 70 0 0 chr3 38714874 38715174 -188809404 - AluY SINE Alu -11 300 1 1169 266 88 146 chr3 38715174 38715762 -188808816 + L2 LINE L2 1897 2517 -796 468 35 0 0 chr3 38715762 38715820 -188808758 + (CA)n Simple_repeat Simple_repeat 1 58 0 1169 266 88 146 chr3 38715820 38716559 -188808019 + L2 LINE L2 2517 3085 -228 2095 109 10 7 chr3 38716559 38716863 -188807715 - AluSp SINE Alu -8 305 1 1169 266 88 146 chr3 38716863 38717080 -188807498 + L2 LINE L2 3085 3313 0 2454 71 0 13 chr3 38717165 38717476 -188807102 + AluY SINE Alu 5 311 0 212 267 44 78 chr3 38718180 38718270 -188806308 + MIR SINE MIR 75 161 -101 670 282 63 15 chr3 38718387 38718784 -188805794 + L1MCa LINE L1 1219 1634 -4792 331 317 138 0 chr3 38718992 38719137 -188805441 - MER5B DNA MER1_type -3 175 11 522 260 39 0 chr3 38719296 38719423 -188805155 - MER5B DNA MER1_type -5 173 42 1532 202 0 39 chr3 38719443 38719750 -188804828 - AluJo SINE Alu -17 295 1 259 358 115 12 chr3 38720552 38720717 -188803861 + MER5A DNA MER1_type 8 189 0 * 731 272 51 13 chr3 38720717 38720941 -188803637 + MIR SINE MIR 16 243 -19 5353 184 28 14 chr3 38721329 38722654 -188801924 - L1MC2 LINE L1 -40 6304 4943 189 0 0 0 chr3 38722654 38722675 -188801903 + (TC)n Simple_repeat Simple_repeat 2 22 0 5353 184 28 14 chr3 38722675 38723156 -188801422 - L1MC2 LINE L1 -1401 4943 4470 189 211 0 0 chr3 38723313 38723365 -188801213 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 261 293 61 24 chr3 38723586 38723798 -188800780 - L1ME LINE L1 -340 5781 5562 442 303 94 37 chr3 38723848 38724092 -188800486 - L1ME LINE L1 -2271 5514 5257 386 315 92 59 chr3 38724219 38724609 -188799969 + L3 LINE CR1 1086 1488 -89 508 316 25 5 chr3 38726084 38726280 -188798298 + LTR16B LTR ERVL 223 422 -42 3783 152 23 54 chr3 38726861 38727698 -188796880 + L1PB4 LINE L1 5344 6154 -2 316 293 128 15 chr3 38728301 38728434 -188796144 - MIR3 SINE MIR -41 167 20 1527 281 122 15 chr3 38728900 38729498 -188795080 + MLT2F LTR ERVL 2 663 0 260 269 76 56 chr3 38729707 38729904 -188794674 + MLT1H LTR MaLR 342 542 -7 481 333 129 0 chr3 38730041 38730266 -188794312 + MIR SINE MIR 5 258 -4 705 249 52 43 chr3 38730903 38731136 -188793442 - MIR SINE MIR 0 262 28 201 74 0 0 chr3 38731679 38731706 -188792872 + (CAG)n Simple_repeat Simple_repeat 2 28 0 459 302 137 26 chr3 38732182 38732543 -188792035 + L2 LINE L2 2614 3016 -256 333 293 35 0 chr3 38732543 38732659 -188791919 + LTR33 LTR ERVL 1 120 -401 1857 138 74 19 chr3 38732998 38733323 -188791255 + MER61A LTR ERV1 1 343 0 2427 180 28 18 chr3 38733323 38733867 -188790711 + MER61A-int LTR ERV1 1 549 -4668 271 128 0 21 chr3 38733915 38733962 -188790616 + MER61A-int LTR ERV1 732 777 -4440 10139 79 27 19 chr3 38733998 38735607 -188788971 + MER61A-int LTR ERV1 1411 3031 -2186 17214 90 19 13 chr3 38735707 38738652 -188785926 + MER61A-int LTR ERV1 2211 5217 0 1572 169 63 30 chr3 38738652 38738984 -188785594 + MER61A LTR ERV1 1 343 0 202 310 0 0 chr3 38738994 38739052 -188785526 + L2 LINE L2 3256 3313 0 201 358 84 0 chr3 38739412 38739507 -188785071 + MIR SINE MIR 100 202 -60 402 292 151 16 chr3 38739905 38740090 -188784488 + MIR SINE MIR 53 262 0 1573 217 37 45 chr3 38740694 38740999 -188783579 - MLT1D LTR MaLR 0 505 204 780 204 0 0 chr3 38740999 38741131 -188783447 - FLAM_A SINE Alu -1 132 1 1573 217 37 45 chr3 38741131 38741314 -188783264 - MLT1D LTR MaLR -301 204 21 289 133 0 0 chr3 38742318 38742363 -188782215 - MADE1 DNA Mariner 0 80 36 937 301 60 0 chr3 38742364 38742699 -188781879 - LTR16C LTR ERVL -57 434 80 2810 134 4 13 chr3 38743078 38743532 -188781046 + L1PA16 LINE L1 5716 6165 -1 203 234 43 0 chr3 38743726 38743773 -188780805 + L2 LINE L2 3242 3290 -23 2333 114 34 0 chr3 38743835 38744187 -188780391 + THE1B LTR MaLR 1 364 0 186 43 0 0 chr3 38744633 38744656 -188779922 + (A)n Simple_repeat Simple_repeat 1 23 0 299 338 65 13 chr3 38744922 38745076 -188779502 + L2 LINE L2 2245 2406 -908 1939 258 108 24 chr3 38745656 38746393 -188778185 - L1MD2 LINE L1 -227 6066 5268 23 0 0 0 chr3 38746421 38746444 -188778134 + AT_rich Low_complexity Low_complexity 1 23 0 2068 48 0 0 chr3 38746656 38746904 -188777674 - L1PA7 LINE L1 -2 6152 5905 2628 120 12 8 chr3 38746917 38747317 -188777261 - LTR3 LTR ERVK -9 423 22 4983 57 7 3 chr3 38747335 38748048 -188776530 - L1PA7 LINE L1 -242 5912 5198 1250 88 0 0 chr3 38748045 38748226 -188776352 - L1P3 LINE L1 -5176 1285 1105 * 226 139 0 0 chr3 38748246 38748282 -188776296 + U2 snRNA snRNA 1 36 -152 292 188 50 0 chr3 38748282 38748362 -188776216 + L1ME4a LINE L1 5319 5402 -957 * 5424 253 60 27 chr3 38748359 38748383 -188776195 - L1MD2 LINE L1 -1634 4446 4424 2122 159 11 124 chr3 38748383 38748931 -188775647 + MER66B LTR ERV1 1 486 0 5424 253 60 27 chr3 38748931 38751302 -188773276 - L1MD2 LINE L1 -1656 4424 1935 2145 73 33 4 chr3 38751302 38751601 -188772977 - AluY SINE Alu 0 307 1 5424 253 60 27 chr3 38751601 38752230 -188772348 - L1MD2 LINE L1 -4145 1935 1328 974 255 82 55 chr3 38752243 38753006 -188771572 - L1MD2 LINE L1 -4864 1216 469 3077 152 40 78 chr3 38753123 38753841 -188770737 + LTR8 LTR ERV1 1 691 0 358 235 10 0 chr3 38754907 38755034 -188769544 + L1ME4a LINE L1 5695 5826 -295 226 241 19 0 chr3 38755085 38755193 -188769385 + (TA)n Simple_repeat Simple_repeat 1 110 0 1443 219 16 42 chr3 38755729 38756014 -188768564 + L1ME1 LINE L1 5740 6012 -154 1612 156 65 54 chr3 38756014 38756385 -188768193 - THE1C LTR MaLR 0 375 1 1443 219 16 42 chr3 38756385 38756533 -188768045 + L1ME1 LINE L1 6012 6162 -4 867 216 6 0 chr3 38756690 38756861 -188767717 + FRAM SINE Alu 1 166 -10 542 244 39 0 chr3 38756861 38756988 -188767590 - MER5B DNA MER1_type -45 133 2 189 304 108 78 chr3 38757465 38757669 -188766909 - MIR SINE MIR -50 212 3 207 203 43 43 chr3 38757715 38757784 -188766794 - MIR SINE MIR 0 262 194 536 232 18 0 chr3 38757828 38757940 -188766638 - MIR SINE MIR -71 191 78 767 180 16 0 chr3 38758847 38758969 -188765609 - FLAM_C SINE Alu -19 124 1 361 167 52 52 chr3 38760402 38760498 -188764080 + MER53 DNA DNA 23 118 -71 4171 147 36 1 chr3 38760521 38761268 -188763310 - L1PA16 LINE L1 0 6166 5394 * 6972 222 36 11 chr3 38761267 38763552 -188761026 - L1PA15-16 LINE L1 -2640 4209 1852 2584 93 6 0 chr3 38763603 38763956 -188760622 + THE1A LTR MaLR 1 355 0 471 248 116 0 chr3 38763967 38764096 -188760482 + MLT1A1 LTR MaLR 199 342 -23 243 91 0 0 chr3 38764094 38764127 -188760451 + U2 snRNA snRNA 1 33 -155 * 357 242 48 0 chr3 38765219 38765343 -188759235 + LTR16A1 LTR ERVL 320 449 -8 1044 221 91 100 chr3 38765972 38766433 -188758145 - LTR16A1 LTR ERVL 0 457 1 333 161 0 0 chr3 38767929 38767985 -188756593 + U2 snRNA snRNA 4 59 -129 371 332 30 64 chr3 38767985 38768250 -188756328 - MIR SINE MIR -1 261 6 254 397 45 10 chr3 38768445 38768737 -188755841 + L2 LINE L2 2456 2757 -557 1362 265 54 15 chr3 38769001 38769465 -188755113 - LTR16C LTR ERVL -6 485 4 370 266 62 9 chr3 38769472 38769585 -188754993 + MER94 DNA DNA 9 127 -7 240 355 40 24 chr3 38769790 38769914 -188754664 + MIR SINE MIR 21 146 -62 241 246 36 103 chr3 38770774 38770969 -188753609 - HAL1 LINE L1 -1 2506 2325 983 282 52 70 chr3 38770970 38771453 -188753125 + MLT1J LTR MaLR 1 474 -37 789 289 109 33 chr3 38771483 38772113 -188752465 - HAL1 LINE L1 -188 2319 1642 357 312 45 13 chr3 38773665 38773819 -188750759 + MIR SINE MIR 53 211 -51 272 346 19 57 chr3 38774029 38774188 -188750390 - MER5A DNA MER1_type -2 187 35 230 320 20 67 chr3 38774057 38774207 -188750371 + MER5A DNA MER1_type 43 185 -4 * 219 296 0 0 chr3 38775311 38775365 -188749213 + (CA)n Simple_repeat Simple_repeat 2 55 0 193 273 169 0 chr3 38775550 38775627 -188748951 + MIR SINE MIR 112 201 -61 1934 213 67 17 chr3 38775681 38776162 -188748416 + MLT1D LTR MaLR 1 374 0 625 348 49 22 chr3 38777460 38777908 -188746670 + MLT1K LTR MaLR 10 469 -119 259 353 63 43 chr3 38777980 38778187 -188746391 - L2 LINE L2 -388 2926 2716 1509 225 45 25 chr3 38778254 38778698 -188745880 + Charlie4a DNA MER1_type 36 488 -20 637 229 51 40 chr3 38779990 38780017 -188744561 - MER45A DNA AcHobo -1404 177 152 1889 133 29 52 chr3 38780017 38780175 -188744403 + THE1C LTR MaLR 1 161 -214 2441 69 10 0 chr3 38780175 38780481 -188744097 - AluY SINE Alu -2 309 1 1889 133 29 52 chr3 38780481 38780706 -188743872 + THE1C LTR MaLR 161 375 0 637 229 51 40 chr3 38780706 38780853 -188743725 - MER45A DNA AcHobo -1429 152 1 362 279 53 89 chr3 38781188 38781696 -188742882 - HAL1 LINE L1 -905 1602 1113 2941 224 59 9 chr3 38782094 38782888 -188741690 + MER97a DNA MER1_type? 57 890 -4 696 286 56 31 chr3 38783754 38784169 -188740409 + MLT1G LTR MaLR 10 416 -126 2009 149 10 0 chr3 38784625 38784933 -188739645 - AluSx SINE Alu -1 311 1 404 277 45 25 chr3 38785272 38785619 -188738959 + MER110A LTR ERV1 95 470 0 188 135 27 0 chr3 38785778 38785815 -188738763 + GA-rich Low_complexity Low_complexity 3 40 0 685 278 16 26 chr3 38785817 38786011 -188738567 - MIR SINE MIR -64 198 7 946 198 21 11 chr3 38788371 38788558 -188736020 - MER5A DNA MER1_type 0 189 1 243 193 18 18 chr3 38788684 38788741 -188735837 + GA-rich Low_complexity Low_complexity 4 60 0 210 286 71 14 chr3 38789543 38789613 -188734965 + L2 LINE L2 3161 3234 -38 616 230 0 0 chr3 38790065 38790178 -188734400 + MER81 DNA DNA 1 113 -1 308 292 6 60 chr3 38791356 38791512 -188733066 - MIR SINE MIR -63 145 36 302 252 204 10 chr3 38791705 38791808 -188732770 - L2 LINE L2 0 3272 3150 949 202 83 0 chr3 38791813 38792006 -188732572 - MER58A DNA MER1_type -3 221 13 192 77 0 0 chr3 38792069 38792095 -188732483 + (TTG)n Simple_repeat Simple_repeat 2 27 0 372 180 144 14 chr3 38792121 38792260 -188732318 - L1ME4a LINE L1 -4 6117 5961 222 37 0 0 chr3 38792368 38792395 -188732183 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5028 96 64 73 chr3 38792415 38793318 -188731260 - THE1B-int LTR MaLR -685 895 1 2347 138 3 22 chr3 38793318 38793689 -188730889 - THE1B LTR MaLR 0 364 1 442 331 11 0 chr3 38793741 38793916 -188730662 - LTR16A LTR ERVL -89 361 185 260 307 44 0 chr3 38794340 38794454 -188730124 + (TGAG)n Simple_repeat Simple_repeat 3 121 0 236 228 0 0 chr3 38794634 38794691 -188729887 + Charlie8 DNA MER1_type 2360 2416 -1 826 294 58 7 chr3 38794720 38794995 -188729583 - LTR16C LTR ERVL -14 477 189 201 194 30 104 chr3 38796270 38796337 -188728241 - MIR SINE MIR -111 151 90 643 277 53 77 chr3 38796773 38797152 -188727426 - MLT1J LTR MaLR -52 459 90 2039 136 27 3 chr3 38797352 38797690 -188726888 - L1PB4 LINE L1 0 6156 5811 284 277 39 15 chr3 38798761 38798891 -188725687 - L1ME4a LINE L1 -310 5811 5679 289 307 111 29 chr3 38799199 38799515 -188725063 + L1MC/D LINE L1 5317 5658 -2150 249 208 0 0 chr3 38799525 38799597 -188724981 + (CA)n Simple_repeat Simple_repeat 1 72 0 450 0 0 0 chr3 38799624 38799674 -188724904 + (A)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr3 38799695 38799723 -188724855 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 38799779 38799802 -188724776 + AT_rich Low_complexity Low_complexity 1 23 0 40 37 0 0 chr3 38799824 38799878 -188724700 + AT_rich Low_complexity Low_complexity 1 54 0 535 259 5 22 chr3 38799878 38800063 -188724515 - L1PB2 LINE L1 -19 6132 5951 185 229 0 66 chr3 38801630 38801691 -188722887 + L2 LINE L2 3257 3313 0 1518 237 121 11 chr3 38801731 38802276 -188722302 + L1ME3 LINE L1 5488 6092 -70 244 179 45 0 chr3 38802303 38802370 -188722208 + (CATA)n Simple_repeat Simple_repeat 3 72 0 243 293 61 12 chr3 38802548 38802630 -188721948 - MIR SINE MIR -62 146 61 264 30 0 0 chr3 38802663 38802696 -188721882 + (CA)n Simple_repeat Simple_repeat 2 34 0 2383 95 0 3 chr3 38803279 38803585 -188720993 - AluSg1 SINE Alu 0 309 5 523 299 7 14 chr3 38804468 38804615 -188719963 + MIR SINE MIR 12 157 -105 41 58 0 0 chr3 38804620 38804689 -188719889 + AT_rich Low_complexity Low_complexity 1 69 0 1449 67 10 0 chr3 38805574 38805767 -188718811 - L1PA5 LINE L1 -2 6152 5958 918 302 16 4 chr3 38806239 38806484 -188718094 - MIR SINE MIR 0 262 15 285 318 140 9 chr3 38807070 38807177 -188717401 - L2 LINE L2 0 3313 3193 1104 186 13 22 chr3 38807181 38807407 -188717171 - MER58A DNA MER1_type 0 224 1 466 267 107 9 chr3 38807466 38807691 -188716887 - HAL1b LINE L1 -798 550 304 22 0 0 0 chr3 38808008 38808030 -188716548 + AT_rich Low_complexity Low_complexity 1 22 0 1663 217 14 22 chr3 38808136 38808504 -188716074 + MLT1A1 LTR MaLR 1 365 0 186 103 0 0 chr3 38808813 38808842 -188715736 + (TG)n Simple_repeat Simple_repeat 2 30 0 579 312 43 19 chr3 38810046 38810467 -188714111 - L1ME3A LINE L1 -239 5931 5500 209 281 0 31 chr3 38810634 38810698 -188713880 - L2 LINE L2 -3 3310 3249 403 304 0 20 chr3 38810837 38810985 -188713593 + MIR SINE MIR 118 262 0 302 277 45 9 chr3 38811391 38811499 -188713079 - MLT1L LTR MaLR -27 588 477 693 310 29 14 chr3 38811499 38811951 -188712627 + LTR16C LTR ERVL 3 491 0 326 227 48 51 chr3 38812018 38812244 -188712334 - MLT1L LTR MaLR -332 283 11 1003 167 105 4 chr3 38814079 38814327 -188710251 + MER33 DNA MER1_type 1 266 -58 21 0 0 0 chr3 38814969 38814990 -188709588 + AT_rich Low_complexity Low_complexity 1 21 0 435 270 104 65 chr3 38815288 38815683 -188708895 + L2 LINE L2 2266 2734 -580 1660 265 62 16 chr3 38815734 38816582 -188707996 + L1ME3A LINE L1 5083 5973 -197 774 146 18 111 chr3 38816589 38816760 -188707818 + AluJo SINE Alu 101 255 -57 1219 202 36 39 chr3 38817336 38817673 -188706905 - L1MB7 LINE L1 -20 6164 5829 1458 187 67 12 chr3 38819190 38819557 -188705021 - L1MB2 LINE L1 -7 6164 5815 4854 151 23 4 chr3 38819565 38821146 -188703432 - L1PA16 LINE L1 -9 6157 4549 1879 110 11 0 chr3 38821344 38821607 -188702971 + AluSq SINE Alu 1 266 -47 35 0 0 0 chr3 38823699 38823734 -188700844 + AT_rich Low_complexity Low_complexity 1 35 0 296 336 64 0 chr3 38823914 38824039 -188700539 - MIR SINE MIR -77 185 53 287 355 152 5 chr3 38824573 38824784 -188699794 + MIR SINE MIR 8 249 -13 849 297 76 54 chr3 38825023 38825525 -188699053 - MLT1K LTR MaLR -65 523 11 764 275 32 53 chr3 38825564 38825811 -188698767 - MIR SINE MIR -1 261 20 1245 206 54 42 chr3 38825851 38826186 -188698392 + MLT1D LTR MaLR 22 360 -145 253 105 0 53 chr3 38826217 38826274 -188698304 + (TCTCC)n Simple_repeat Simple_repeat 1 54 0 1446 254 123 40 chr3 38826323 38826899 -188697679 + MLT1E3 LTR MaLR 1 624 0 659 190 0 25 chr3 38826978 38827126 -188697452 + FLAM_A SINE Alu 5 133 0 552 225 50 8 chr3 38827498 38827618 -188696960 + MIR SINE MIR 72 196 -66 558 240 77 52 chr3 38827903 38828136 -188696442 - MIR SINE MIR -12 250 12 180 0 0 0 chr3 38828525 38828545 -188696033 + (T)n Simple_repeat Simple_repeat 1 20 0 296 257 181 0 chr3 38829301 38829406 -188695172 + MER5C DNA MER1_type 2 125 -199 229 236 28 14 chr3 38829536 38829608 -188694970 + GA-rich Low_complexity Low_complexity 3 75 0 635 263 91 51 chr3 38829688 38830060 -188694518 + L2 LINE L2 2887 3273 -40 383 38 19 0 chr3 38830073 38830126 -188694452 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 189 302 82 63 chr3 38830554 38830713 -188693865 + MIR SINE MIR 15 176 -86 301 164 18 0 chr3 38831390 38831445 -188693133 + L2 LINE L2 3257 3312 -1 4993 140 49 10 chr3 38832415 38833955 -188690623 - L1PB2 LINE L1 -2 6149 4549 444 212 62 26 chr3 38834204 38834317 -188690261 + MER63 DNA MER1_type 1 743 -93 562 310 58 25 chr3 38835007 38835281 -188689297 - MER115 DNA AcHobo -263 430 148 317 329 77 12 chr3 38835386 38835556 -188689022 - L2 LINE L2 -161 3111 2931 840 196 0 80 chr3 38836130 38836329 -188688249 - MER58A DNA MER1_type -2 222 40 2106 122 7 0 chr3 38836746 38837040 -188687538 + AluSg SINE Alu 3 298 -12 503 332 22 32 chr3 38837069 38837346 -188687232 - MLT1I LTR MaLR -64 345 72 421 346 58 5 chr3 38837399 38837587 -188686991 + MIR SINE MIR 63 260 -2 192 419 12 12 chr3 38837576 38837662 -188686916 + MIR SINE MIR 55 140 -68 * 1019 306 72 15 chr3 38837979 38838436 -188686142 + MLT2E LTR ERVL 1 483 -145 484 109 20 79 chr3 38838436 38838480 -188686098 + MLT1B LTR MaLR 1 46 -344 2167 76 0 0 chr3 38838480 38838756 -188685822 - AluY SINE Alu -17 294 19 484 109 20 79 chr3 38838756 38838812 -188685766 + MLT1B LTR MaLR 46 95 -295 659 187 7 43 chr3 38838826 38838965 -188685613 - AluJo SINE Alu -178 134 1 1448 139 25 65 chr3 38838968 38839291 -188685287 + MLT1B LTR MaLR 81 390 0 5748 85 22 3 chr3 38839397 38840257 -188684321 + L1PA12 LINE L1 5291 6166 -2 310 164 82 0 chr3 38840265 38840326 -188684252 + MLT2E LTR ERVL 563 628 0 632 268 113 22 chr3 38840326 38840557 -188684021 + MIR SINE MIR 10 261 -1 1909 251 8 32 chr3 38840827 38840960 -188683618 + MLT1F LTR MaLR 1 136 -406 2165 112 0 16 chr3 38840960 38841272 -188683306 + AluSx SINE Alu 1 307 -5 1909 251 8 32 chr3 38841272 38841633 -188682945 + MLT1F LTR MaLR 136 483 -59 490 257 45 92 chr3 38841719 38841998 -188682580 - MIR SINE MIR 0 262 3 2140 128 76 17 chr3 38842703 38843047 -188681531 - THE1B LTR MaLR 0 364 1 367 244 170 9 chr3 38843406 38843655 -188680923 - L1MC/D LINE L1 -561 5560 5478 221 175 53 0 chr3 38844305 38844362 -188680216 + (TA)n Simple_repeat Simple_repeat 1 60 0 790 237 114 31 chr3 38844390 38844707 -188679871 - MER2 DNA MER2_type -1 343 1 321 301 50 60 chr3 38844709 38845046 -188679532 - L1ME3A LINE L1 -243 5927 5592 1655 249 75 78 chr3 38845062 38846330 -188678248 - L1MC5 LINE L1 -58 7903 6640 990 231 9 9 chr3 38846656 38846877 -188677701 - MER58A DNA MER1_type 0 224 4 387 261 76 17 chr3 38848146 38848265 -188676313 + MIR SINE MIR 60 185 -77 814 246 63 85 chr3 38848297 38848851 -188675727 + MER34 LTR ERV1 1 542 0 182 257 0 0 chr3 38849095 38849130 -188675448 + L2 LINE L2 3263 3297 -16 538 258 145 6 chr3 38849228 38849387 -188675191 + MER5A DNA MER1_type 9 189 0 289 240 120 38 chr3 38850144 38850410 -188674168 - MER34 LTR ERV1 0 734 353 337 253 143 58 chr3 38850771 38850925 -188673653 - L1ME4a LINE L1 -87 6034 5868 300 319 8 17 chr3 38850977 38851096 -188673482 - L1MC4 LINE L1 -5 8037 7920 1438 189 130 13 chr3 38851578 38851954 -188672624 - MER39 LTR ERV1 0 707 288 1522 107 51 5 chr3 38851996 38852212 -188672366 - AluSg/x SINE Alu 0 312 87 10170 123 30 4 chr3 38852215 38853858 -188670720 - Tigger1 DNA MER2_type -733 1685 1 2106 130 0 3 chr3 38853881 38854193 -188670385 - AluSx SINE Alu 0 311 1 195 275 0 0 chr3 38855214 38855254 -188669324 + L2 LINE L2 3215 3254 -18 305 232 63 11 chr3 38855428 38855523 -188669055 - MER103 DNA DNA -45 121 22 21 36 0 0 chr3 38856376 38856404 -188668174 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 38856430 38856467 -188668111 + AT_rich Low_complexity Low_complexity 1 37 0 1485 216 86 16 chr3 38857214 38857381 -188667197 + LTR37B LTR ERV1 9 163 -305 2548 187 38 27 chr3 38857381 38857933 -188666645 + MER89 LTR ERV1 1 558 -1 1485 216 86 16 chr3 38857933 38858195 -188666383 + LTR37B LTR ERV1 163 468 0 1646 157 128 33 chr3 38859466 38859919 -188664659 + LTR54B LTR ERV1 1 496 -2 309 324 10 0 chr3 38860085 38860187 -188664391 - L1ME4a LINE L1 -289 5881 5779 573 211 122 102 chr3 38860471 38860775 -188663803 - MLT1H LTR MaLR -125 424 115 552 233 54 3 chr3 38860778 38860978 -188663600 - MLT1G1 LTR MaLR 0 595 298 447 296 60 9 chr3 38861004 38861216 -188663362 - MLT1G1 LTR MaLR -332 223 1 251 255 20 20 chr3 38861225 38861323 -188663255 - MLT1H LTR MaLR -444 105 8 1458 155 21 55 chr3 38862628 38862919 -188661659 - AluJo SINE Alu -15 297 17 279 317 35 13 chr3 38863364 38863591 -188660987 + L1ME3A LINE L1 2903 3134 -3012 585 269 115 15 chr3 38863965 38864709 -188659869 + L1ME3A LINE L1 5118 5925 -245 472 82 59 24 chr3 38865038 38865123 -188659455 + MER4A LTR ERV1 1 88 -576 1595 116 50 28 chr3 38865132 38865470 -188659108 + MER4A LTR ERV1 261 664 0 5642 120 12 9 chr3 38865935 38866826 -188657752 + MER4D LTR ERV1 1 894 -9 2300 225 103 21 chr3 38866920 38867547 -188657031 - L1ME2 LINE L1 -25 6139 5422 1394 211 11 7 chr3 38867547 38867847 -188656731 - AluJb SINE Alu 0 301 1 2300 225 103 21 chr3 38867847 38868080 -188656498 - L1ME2 LINE L1 -742 5422 5209 * 5658 158 26 30 chr3 38868055 38870160 -188654418 - L1 LINE L1 -2664 4901 2811 2119 140 36 36 chr3 38870160 38870524 -188654054 - THE1B LTR MaLR 0 364 1 10802 112 2 8 chr3 38870524 38871615 -188652963 - THE1B-int LTR MaLR 0 1580 499 7556 33 0 0 chr3 38871615 38872831 -188651747 - L1PA4 LINE L1 0 6155 4938 10802 112 2 8 chr3 38872831 38873328 -188651250 - THE1B-int LTR MaLR -1081 499 1 2223 124 33 33 chr3 38873328 38873690 -188650888 - THE1B LTR MaLR 0 364 3 12897 171 76 24 chr3 38873692 38876254 -188648324 - L1 LINE L1 -4750 2815 106 2257 101 3 10 chr3 38876254 38876561 -188648017 + AluSc SINE Alu 1 305 -4 12897 171 76 24 chr3 38876561 38876673 -188647905 - L1 LINE L1 -7459 106 1 730 315 88 49 chr3 38876714 38877649 -188646929 + L1MC/D LINE L1 4605 5585 -748 306 0 0 0 chr3 38877941 38877975 -188646603 + (CA)n Simple_repeat Simple_repeat 2 35 0 213 351 108 9 chr3 38878236 38878347 -188646231 - L3 LINE CR1 -1025 552 431 525 284 91 50 chr3 38879182 38879597 -188644981 - MLT1K LTR MaLR 0 588 139 1113 223 31 71 chr3 38879842 38880223 -188644355 + MLT1A2 LTR MaLR 1 366 -8 211 345 164 34 chr3 38880403 38880902 -188643676 + L2 LINE L2 1932 2495 -819 282 289 148 23 chr3 38880936 38881064 -188643514 + L2 LINE L2 2630 2773 -541 558 286 44 28 chr3 38881223 38881405 -188643173 - MIR SINE MIR -65 197 13 246 256 51 13 chr3 38881481 38881559 -188643019 + Charlie4 DNA MER1_type 1863 1943 -18 415 332 31 26 chr3 38882929 38883158 -188641420 + MLT1L LTR MaLR 364 593 -22 207 301 109 58 chr3 38883302 38883578 -188641000 + L2 LINE L2 2656 2945 -369 273 336 24 0 chr3 38885288 38885413 -188639165 - MIR SINE MIR -17 245 118 241 419 27 7 chr3 38885693 38885841 -188638737 - L2 LINE L2 -454 2860 2710 243 173 0 0 chr3 38886491 38886543 -188638035 + (CA)n Simple_repeat Simple_repeat 2 53 0 185 352 21 28 chr3 38887358 38887500 -188637078 + L2 LINE L2 2341 2481 -833 406 307 79 36 chr3 38887548 38887877 -188636701 + L2 LINE L2 2599 2941 -373 185 300 56 33 chr3 38888030 38888120 -188636458 + L2 LINE L2 3181 3272 0 360 125 0 0 chr3 38890627 38890691 -188633887 + (GA)n Simple_repeat Simple_repeat 1 64 0 212 247 188 35 chr3 38891757 38891842 -188632736 + L2 LINE L2 3155 3252 -20 865 198 11 28 chr3 38892112 38892294 -188632284 + AluJb SINE Alu 134 312 0 1614 162 0 52 chr3 38892744 38893034 -188631544 + AluJo SINE Alu 3 277 -35 180 0 0 0 chr3 38893047 38893067 -188631511 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2111 119 3 7 chr3 38894333 38894628 -188629950 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr3 38895022 38895043 -188629535 + AT_rich Low_complexity Low_complexity 1 21 0 333 288 62 46 chr3 38895554 38896102 -188628476 + L1MC/D LINE L1 2903 3459 -2687 414 224 118 12 chr3 38896325 38896495 -188628083 + L1MC/D LINE L1 5066 5253 -893 334 198 151 17 chr3 38896496 38896668 -188627910 + L1MC/D LINE L1 5255 5449 -793 424 317 117 44 chr3 38946853 38947263 -188577315 + L2 LINE L2 2828 3267 -5 358 189 132 9 chr3 38947263 38947369 -188577209 + MER103 DNA DNA 37 155 -11 1993 246 87 27 chr3 38947871 38947901 -188576677 - MLT1G1 LTR MaLR 0 595 568 1838 155 129 26 chr3 38947901 38948289 -188576289 + MSTA LTR MaLR 1 428 0 9843 117 11 56 chr3 38948291 38949943 -188574635 + MSTA-int LTR MaLR 3 1580 0 2146 135 128 13 chr3 38949943 38950327 -188574251 + MSTA LTR MaLR 1 428 0 1993 246 87 27 chr3 38950327 38950853 -188573725 - MLT1G1 LTR MaLR -26 569 1 1802 123 0 0 chr3 38951111 38951354 -188573224 + AluSc SINE Alu 62 304 -5 698 332 87 7 chr3 38951807 38952223 -188572355 + LTR16A LTR ERVL 2 450 0 942 283 75 40 chr3 38953590 38953990 -188570588 + LTR16C LTR ERVL 73 486 -5 726 323 70 29 chr3 38954470 38954882 -188569696 - LTR16B LTR ERVL -31 433 5 1499 244 9 9 chr3 38954952 38955268 -188569310 + MLT1I LTR MaLR 94 409 0 395 253 20 10 chr3 38957097 38957196 -188567382 - MIR SINE MIR -61 147 48 395 287 7 44 chr3 38957677 38957813 -188566765 - L2 LINE L2 -4 3268 3138 1319 252 117 68 chr3 38959496 38959547 -188565031 + MLT1G1 LTR MaLR 5 52 -543 2316 108 108 38 chr3 38959547 38959947 -188564631 - MSTA LTR MaLR 0 428 1 9817 157 30 2 chr3 38959947 38961554 -188563024 - MSTA-int LTR MaLR 0 1651 1 2314 98 103 54 chr3 38961556 38961778 -188562800 - MSTA LTR MaLR -2 426 216 2225 92 0 7 chr3 38961778 38962084 -188562494 - AluSg SINE Alu 0 304 1 2314 98 103 54 chr3 38962084 38962266 -188562312 - MSTA LTR MaLR -212 216 1 1319 252 117 68 chr3 38962266 38962773 -188561805 + MLT1G1 LTR MaLR 52 595 0 183 305 183 0 chr3 38962773 38962904 -188561674 - L2 LINE L2 -472 2842 2688 1152 282 76 6 chr3 38962912 38963242 -188561336 - MLT1H1 LTR MaLR -199 356 4 396 279 12 31 chr3 38963309 38963470 -188561108 + L2 LINE L2 3156 3313 0 206 196 78 0 chr3 38963473 38963524 -188561054 + L2 LINE L2 3180 3234 -79 215 308 26 13 chr3 38964374 38964452 -188560126 + MIR SINE MIR 29 107 -155 19802 153 33 43 chr3 38964461 38970207 -188554371 + L1MA2 LINE L1 13 5834 -1731 1251 77 0 0 chr3 38970207 38970363 -188554215 + AluY SINE Alu 150 305 -6 19802 153 33 43 chr3 38970363 38971284 -188553294 + L1MA2 LINE L1 5834 6763 -802 4192 121 34 0 chr3 38971384 38972055 -188552523 + L1MA2 LINE L1 7030 7723 0 279 269 51 0 chr3 38972083 38972158 -188552420 + MIR SINE MIR 106 184 -78 510 331 88 22 chr3 38972158 38972339 -188552239 + MER91A DNA MER1_type 1 193 -3 31 44 0 0 chr3 38972364 38972409 -188552169 + AT_rich Low_complexity Low_complexity 1 45 0 228 353 12 0 chr3 38972411 38972496 -188552082 + MIR SINE MIR 175 260 -2 367 245 0 16 chr3 38972852 38972974 -188551604 + L1MC/D LINE L1 5653 5768 -353 1301 226 109 24 chr3 38973170 38973591 -188550987 - LTR16A1 LTR ERVL 0 457 1 2244 100 0 0 chr3 38973853 38974143 -188550435 + AluSg SINE Alu 1 290 -20 351 286 59 84 chr3 38976897 38977943 -188546635 + L1P LINE L1 2933 3937 -2209 508 243 19 0 chr3 38977943 38978050 -188546528 + MER81 DNA DNA 5 113 -1 351 286 59 84 chr3 38978050 38978364 -188546214 + L1P LINE L1 3937 4258 -1888 853 274 87 0 chr3 38979515 38979814 -188544764 - MLT1I LTR MaLR 0 409 85 365 275 25 25 chr3 38980862 38980982 -188543596 - MLT1L LTR MaLR -84 531 412 364 238 59 30 chr3 38981234 38981335 -188543243 + MIR3 SINE MIR 97 200 -8 503 283 54 0 chr3 38981364 38981512 -188543066 + MIR SINE MIR 96 250 -12 237 108 0 0 chr3 38981642 38981679 -188542899 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 335 181 30 45 chr3 38982259 38982458 -188542120 + AluJo SINE Alu 1 292 -9 1460 200 48 97 chr3 38982817 38983333 -188541245 + MER110 LTR ERV1 1 491 0 500 278 17 52 chr3 38984335 38984508 -188540070 + MIR SINE MIR 23 189 -73 342 215 38 0 chr3 38984564 38984643 -188539935 - MLT1I LTR MaLR -22 387 306 468 238 43 67 chr3 38984679 38984889 -188539689 - MLT1I LTR MaLR -202 207 3 1245 255 46 95 chr3 38985055 38985800 -188538778 + MER21B LTR ERV1 6 713 -150 206 307 20 30 chr3 38985818 38985919 -188538659 - L2 LINE L2 -54 3259 3160 294 222 22 11 chr3 38986053 38986143 -188538435 + Charlie8 DNA MER1_type 85 175 -2242 262 347 51 0 chr3 38986295 38986393 -188538185 - MIR SINE MIR -76 132 30 205 171 0 0 chr3 38986610 38986645 -188537933 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 668 298 46 27 chr3 38986658 38986987 -188537591 + L1MEc LINE L1 47 381 -6015 714 212 132 0 chr3 38987266 38987455 -188537123 + MER20 DNA MER1_type 1 214 -5 486 279 11 11 chr3 38987506 38987689 -188536889 + L1MEc LINE L1 683 865 -5531 421 312 213 20 chr3 38987766 38987863 -188536715 - L2 LINE L2 -35 3278 3201 198 118 0 0 chr3 38987863 38987897 -188536681 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 421 312 213 20 chr3 38987897 38988100 -188536478 - L2 LINE L2 -112 3201 2920 5040 156 26 27 chr3 38988119 38989937 -188534641 + L1MA3 LINE L1 4486 6304 -1 286 258 68 89 chr3 38989954 38989976 -188534602 - L2 LINE L2 -420 2894 2873 2246 147 5 33 chr3 38989976 38990343 -188534235 - LTR18A LTR ERVL 0 357 1 286 258 68 89 chr3 38990343 38990469 -188534109 - L2 LINE L2 -441 2873 2748 562 192 87 52 chr3 38990469 38990641 -188533937 - MER5B DNA MER1_type 0 178 1 286 258 68 89 chr3 38990641 38990681 -188533897 - L2 LINE L2 -566 2748 2709 2175 120 0 7 chr3 38991383 38991683 -188532895 + AluSx SINE Alu 1 298 -14 597 238 38 44 chr3 38991732 38991892 -188532686 + MER5A DNA MER1_type 30 188 -1 408 188 23 0 chr3 38992867 38992995 -188531583 + (TA)n Simple_repeat Simple_repeat 2 132 0 619 145 6 23 chr3 38993125 38993297 -188531281 + (TA)n Simple_repeat Simple_repeat 2 170 0 296 232 37 0 chr3 38993322 38993404 -188531174 + MER20 DNA MER1_type 131 215 -4 591 278 32 32 chr3 38994003 38994219 -188530359 - L2 LINE L2 0 3313 3098 451 237 8 25 chr3 38994283 38994401 -188530177 - L2 LINE L2 -534 2780 2665 656 305 39 13 chr3 38994405 38994638 -188529940 - L2 LINE L2 -452 2862 2624 207 277 123 0 chr3 38996750 38996815 -188527763 + MIR SINE MIR 75 147 -115 209 219 0 0 chr3 38997242 38997283 -188527295 + L2 LINE L2 3268 3308 -5 233 241 48 12 chr3 38998325 38998408 -188526170 + MIR SINE MIR 70 155 -107 1809 233 107 34 chr3 38998641 38999268 -188525310 + MER76 LTR ERV 1 673 -15 2585 52 3 0 chr3 38999356 38999664 -188524914 - AluY SINE Alu 0 311 3 295 232 11 32 chr3 39000517 39000612 -188523966 - L1ME4a LINE L1 -65 6056 5964 699 284 106 23 chr3 39000664 39001057 -188523521 - LTR33 LTR ERVL -8 513 88 704 199 7 0 chr3 39001057 39001193 -188523385 - MER58B DNA MER1_type 0 341 205 263 299 10 31 chr3 39001251 39001348 -188523230 - LTR33 LTR ERVL -424 97 3 201 195 0 0 chr3 39001478 39001519 -188523059 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 219 69 0 0 chr3 39001521 39001550 -188523028 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 271 106 46 chr3 39001772 39001990 -188522588 + L1MC/D LINE L1 5631 5861 -1947 312 258 0 22 chr3 39002007 39002096 -188522482 + (TATG)n Simple_repeat Simple_repeat 2 88 0 629 308 72 14 chr3 39002360 39002708 -188521870 + MERVL LTR ERVL 2629 2996 -2489 1618 304 53 11 chr3 39002741 39003356 -188521222 + MERVL LTR ERVL 3087 3686 -1799 3825 199 60 36 chr3 39003551 39004483 -188520095 + L1M4 LINE L1 4 957 -5585 2677 137 28 19 chr3 39004590 39005014 -188519564 - MSTC LTR MaLR 0 428 1 614 213 25 0 chr3 39006937 39007059 -188517519 + L2 LINE L2 3189 3313 0 * 772 272 86 9 chr3 39007056 39007288 -188517290 + MIR SINE MIR 13 262 0 240 167 106 15 chr3 39007824 39007890 -188516688 + MLT1J LTR MaLR 110 181 -330 262 171 53 26 chr3 39008070 39008146 -188516432 + MLT1L LTR MaLR 532 609 -6 1670 194 10 10 chr3 39008506 39008800 -188515778 + AluJo SINE Alu 1 294 -18 315 254 94 7 chr3 39008818 39008956 -188515622 + LTR16A1 LTR ERVL 246 395 -62 270 200 17 0 chr3 39009091 39009151 -188515427 + LTR16A1 LTR ERVL 397 457 0 519 15 0 0 chr3 39009887 39009953 -188514625 - L1PA13 LINE L1 -4 6159 6094 23 33 0 0 chr3 39010280 39010310 -188514268 + AT_rich Low_complexity Low_complexity 1 30 0 694 289 32 8 chr3 39010338 39010591 -188513987 + MIR SINE MIR 2 260 -2 995 190 28 36 chr3 39011500 39011540 -188513038 - L1M4 LINE L1 -1426 4720 4681 2711 232 13 13 chr3 39011540 39012165 -188512413 - MLT1E2 LTR MaLR -1 625 1 995 190 28 36 chr3 39012165 39012371 -188512207 - L1M4 LINE L1 -1465 4681 4476 779 206 6 0 chr3 39012445 39012605 -188511973 - AluSp SINE Alu 0 313 153 21 0 0 0 chr3 39012617 39012638 -188511940 + AT_rich Low_complexity Low_complexity 1 21 0 202 343 14 0 chr3 39012668 39012738 -188511840 + L2 LINE L2 3202 3272 0 950 149 56 0 chr3 39012925 39013086 -188511492 - AluSp SINE Alu -24 289 120 384 236 0 0 chr3 39013122 39013194 -188511384 + L2 LINE L2 3201 3272 0 2200 125 0 19 chr3 39013765 39014076 -188510502 - AluSx SINE Alu -7 305 1 237 310 14 0 chr3 39014314 39014385 -188510193 + L2 LINE L2 3187 3258 -55 270 0 0 0 chr3 39014562 39014592 -188509986 + (TG)n Simple_repeat Simple_repeat 2 31 0 1533 163 29 11 chr3 39014592 39014864 -188509714 - AluJb SINE Alu -30 278 1 255 319 41 18 chr3 39015206 39015375 -188509203 + L1ME4a LINE L1 5533 5705 -416 5352 184 30 66 chr3 39018336 39019844 -188504734 + Charlie1a DNA MER1_type 1 1454 -1 1620 141 89 26 chr3 39021061 39021409 -188503169 + THE1C LTR MaLR 1 370 -5 1152 238 99 23 chr3 39021419 39022123 -188502455 - L1MCc LINE L1 -3614 3327 2592 263 144 75 14 chr3 39022167 39022313 -188502265 + (TA)n Simple_repeat Simple_repeat 1 155 0 469 259 77 80 chr3 39022511 39023235 -188501343 - L1MCc LINE L1 -4801 2140 1167 316 301 139 42 chr3 39023428 39023737 -188500841 + L1ME4a LINE L1 5726 6064 -57 294 323 48 21 chr3 39023812 39023998 -188500580 + L3b LINE CR1 1219 1409 -174 431 331 53 24 chr3 39024148 39024317 -188500261 + L3b LINE CR1 1405 1578 -5 790 304 104 80 chr3 39025673 39026933 -188497645 + L2 LINE L2 1965 3251 -21 252 0 0 0 chr3 39026942 39026970 -188497608 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 228 327 256 14 chr3 39027105 39027328 -188497250 - L3 LINE CR1 -653 924 648 309 301 60 7 chr3 39027629 39027865 -188496713 + MLT1L LTR MaLR 318 615 0 421 323 30 24 chr3 39027881 39028045 -188496533 - L3 LINE CR1 -1007 570 406 812 266 60 22 chr3 39028386 39028840 -188495738 - MLT1J LTR MaLR -1 510 3 912 169 38 27 chr3 39029012 39029196 -188495382 + MER5A DNA MER1_type 2 187 -2 677 189 150 7 chr3 39029803 39029956 -188494622 - MER5A DNA MER1_type -4 185 11 418 180 100 159 chr3 39031123 39031225 -188493353 - MER106A DNA MER1_type 0 236 130 1388 121 60 21 chr3 39031225 39031287 -188493291 - L1MA7 LINE L1 -1 6290 6232 189 0 0 0 chr3 39031287 39031308 -188493270 + (CA)n Simple_repeat Simple_repeat 2 22 0 1388 121 60 21 chr3 39031308 39031526 -188493052 - L1MA7 LINE L1 -59 6232 5999 418 180 100 159 chr3 39031526 39031662 -188492916 - MER106A DNA MER1_type -106 130 12 6353 72 95 0 chr3 39031709 39032777 -188491801 - L1PA8 LINE L1 -2 6170 5058 694 317 24 43 chr3 39032777 39033146 -188491432 - MLT1I LTR MaLR -41 368 7 6384 179 8 11 chr3 39033669 39034504 -188490074 - L1PA14 LINE L1 0 6161 5326 2105 122 3 7 chr3 39034504 39034798 -188489780 - AluSq SINE Alu -20 293 1 6384 179 8 11 chr3 39034798 39036020 -188488558 - L1PA14 LINE L1 -835 5326 4102 1865 174 0 7 chr3 39036495 39036799 -188487779 - AluJb SINE Alu -8 304 3 1032 272 146 28 chr3 39037434 39037900 -188486678 - L2 LINE L2 -4 3309 2791 21 0 0 0 chr3 39038058 39038079 -188486499 + AT_rich Low_complexity Low_complexity 1 21 0 318 298 21 35 chr3 39038080 39038221 -188486357 - LTR16A1 LTR ERVL 0 457 319 189 0 0 0 chr3 39038418 39038439 -188486139 + (A)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr3 39038826 39038847 -188485731 + (A)n Simple_repeat Simple_repeat 1 21 0 572 266 0 19 chr3 39039030 39039184 -188485394 + MIR SINE MIR 102 252 -10 369 202 45 0 chr3 39040077 39040166 -188484412 + HAL1 LINE L1 48 140 -2367 248 250 75 90 chr3 39040187 39040399 -188484179 + HAL1 LINE L1 528 736 -1771 345 249 110 17 chr3 39040403 39040576 -188484002 + HAL1 LINE L1 2026 2214 -293 261 0 0 0 chr3 39040977 39041006 -188483572 + (CA)n Simple_repeat Simple_repeat 2 30 0 825 142 68 0 chr3 39041118 39041294 -188483284 - MER53 DNA DNA -1 188 1 422 212 8 34 chr3 39041879 39041997 -188482581 + L1ME2 LINE L1 6041 6155 -9 225 0 0 0 chr3 39042676 39042701 -188481877 + (A)n Simple_repeat Simple_repeat 1 25 0 204 207 52 17 chr3 39043092 39043150 -188481428 - MIR SINE MIR 0 262 203 1649 142 10 29 chr3 39043171 39043480 -188481098 + MER50 LTR ERV1 409 711 -23 1469 209 36 13 chr3 39043656 39044043 -188480535 - L1MB8 LINE L1 -6 6172 5777 3650 151 115 99 chr3 39044935 39045320 -188479258 + L1MC3 LINE L1 6706 7083 -702 350 281 10 0 chr3 39045320 39045416 -188479162 + MLT1F1 LTR MaLR 35 131 -436 3650 151 115 99 chr3 39045416 39045998 -188478580 + L1MC3 LINE L1 7083 7785 0 1456 119 194 4 chr3 39046626 39046878 -188477700 - AluSx SINE Alu -1 301 2 315 208 0 56 chr3 39047132 39047204 -188477374 + L2 LINE L2 3246 3313 0 382 337 16 67 chr3 39047554 39047747 -188476831 + MIR3 SINE MIR 20 202 -6 630 153 36 0 chr3 39047795 39047906 -188476672 - MIR SINE MIR -44 218 104 886 209 39 0 chr3 39048090 39048272 -188476306 + MER5A DNA MER1_type 1 189 0 856 141 0 8 chr3 39048455 39048583 -188475995 - FLAM_A SINE Alu -6 127 1 212 0 21 85 chr3 39048996 39049043 -188475535 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1633 180 13 36 chr3 39049480 39049786 -188474792 + AluJo SINE Alu 1 299 -13 2379 93 0 0 chr3 39050279 39050579 -188473999 + AluSg SINE Alu 1 300 -10 350 184 40 0 chr3 39051496 39051572 -188473006 - MER103 DNA DNA -81 85 7 1204 104 5 15 chr3 39052137 39052338 -188472240 + L1MA5A LINE L1 6099 6297 0 420 153 0 14 chr3 39052374 39052446 -188472132 + Tigger2 DNA MER2_type 1 71 -2647 226 196 143 0 chr3 39052446 39052502 -188472076 - MER2 DNA MER2_type 0 345 282 * 849 246 6 0 chr3 39052480 39052655 -188471923 - MER8 DNA MER2_type -63 176 1 284 205 43 120 chr3 39052844 39052961 -188471617 - MLT1H LTR MaLR 0 549 442 499 291 42 6 chr3 39053976 39054141 -188470437 - MER5B DNA MER1_type -6 172 2 1034 178 100 59 chr3 39054287 39054608 -188469970 + MER46C DNA MER2_type 1 334 -4 626 277 32 7 chr3 39054740 39054895 -188469683 - MER91A DNA MER1_type -36 160 2 2259 113 3 0 chr3 39055277 39055588 -188468990 + AluSq SINE Alu 1 312 -1 272 317 73 24 chr3 39055617 39055740 -188468838 - MIR SINE MIR -128 134 6 539 254 7 0 chr3 39056427 39056565 -188468013 + L1ME3A LINE L1 6027 6165 -5 494 243 196 31 chr3 39056688 39057005 -188467573 + MLT1J1 LTR MaLR 71 439 -7 353 309 43 32 chr3 39057016 39057204 -188467374 + MLT1J LTR MaLR 25 214 -297 1120 269 72 48 chr3 39057881 39058379 -188466199 - MLT1H LTR MaLR -39 510 1 1879 170 13 10 chr3 39058659 39059148 -188465430 + AluJb SINE Alu 1 312 0 389 155 19 29 chr3 39059148 39059251 -188465327 + GA-rich Low_complexity Low_complexity 3 104 0 1110 226 60 103 chr3 39059403 39059840 -188464738 + MLT1H LTR MaLR 19 436 -113 2574 233 45 50 chr3 39059845 39060517 -188464061 - L1MCa LINE L1 -2252 4174 3507 2124 119 57 23 chr3 39060517 39060869 -188463709 - THE1B LTR MaLR 0 364 1 2574 233 45 50 chr3 39060869 39061257 -188463321 - L1MCa LINE L1 -2919 3507 3119 225 0 0 0 chr3 39061257 39061282 -188463296 + (TA)n Simple_repeat Simple_repeat 1 25 0 447 52 0 0 chr3 39062036 39062094 -188462484 + (TA)n Simple_repeat Simple_repeat 2 59 0 2143 136 0 7 chr3 39062094 39062403 -188462175 - AluSq SINE Alu -6 307 1 3824 224 86 29 chr3 39062412 39064536 -188460042 - L1MCa LINE L1 -3321 3105 839 256 222 14 14 chr3 39064609 39064681 -188459897 + LTR33A LTR ERVL 452 523 0 39 0 0 0 chr3 39065060 39065099 -188459479 + AT_rich Low_complexity Low_complexity 1 39 0 563 123 36 19 chr3 39065115 39065224 -188459354 + L1MC3 LINE L1 5744 5856 -488 2073 137 0 0 chr3 39065224 39065517 -188459061 + AluSq SINE Alu 1 293 -20 563 123 36 19 chr3 39065517 39065531 -188459047 + L1MC3 LINE L1 5856 5868 -476 536 234 30 60 chr3 39066247 39066414 -188458164 - LTR67 LTR ERVL -40 517 356 1459 187 26 32 chr3 39066486 39066886 -188457692 - MLT2D LTR ERVL -48 416 3 1095 241 17 4 chr3 39067035 39067406 -188457172 - LTR33 LTR ERVL -114 407 6 413 286 12 37 chr3 39067413 39067574 -188457004 - LTR67 LTR ERVL -394 163 7 4766 149 28 61 chr3 39068099 39068919 -188455659 - MER54B LTR ERVL 0 793 1 884 287 41 60 chr3 39069027 39069502 -188455076 + Charlie8 DNA MER1_type 1 460 -1957 416 313 36 0 chr3 39069747 39069859 -188454719 - L2 LINE L2 -4 3268 3153 867 275 24 9 chr3 39070071 39070365 -188454213 - MLT1I LTR MaLR -3 406 63 1995 229 32 75 chr3 39071546 39072169 -188452409 + LTR8 LTR ERV1 81 676 -15 236 305 37 12 chr3 39072606 39072688 -188451890 - L2 LINE L2 -58 3255 3172 2377 104 31 0 chr3 39072785 39073140 -188451438 + L1MA4 LINE L1 5663 6028 -272 982 140 0 12 chr3 39073141 39073305 -188451273 + L1MA4 LINE L1 6128 6289 -11 395 264 100 0 chr3 39076090 39076200 -188448378 - MLT1E2 LTR MaLR -38 588 468 1114 109 126 0 chr3 39076200 39076383 -188448195 - MER47A DNA MER2_type -130 236 31 345 258 77 67 chr3 39076448 39076747 -188447831 - L1ME4a LINE L1 -2 6119 5818 279 188 188 20 chr3 39076775 39076876 -188447702 - L1ME4a LINE L1 -12 6109 5992 468 241 116 55 chr3 39077006 39077205 -188447373 - L1ME4a LINE L1 -436 5685 5475 366 23 0 0 chr3 39078292 39078335 -188446243 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 186 0 0 chr3 39079086 39079129 -188445449 + T-rich Low_complexity Low_complexity 1 43 0 964 256 152 35 chr3 39079536 39080029 -188444549 - MLT1G LTR MaLR -2 588 38 416 240 50 25 chr3 39080091 39080212 -188444366 + LTR16A1 LTR ERVL 334 457 0 470 237 7 72 chr3 39080398 39080537 -188444041 - MER5B DNA MER1_type -48 130 1 2248 108 3 0 chr3 39080541 39080846 -188443732 + AluSc SINE Alu 1 306 -3 569 177 54 68 chr3 39081808 39081955 -188442623 + MER104 DNA Tc2 36 180 0 216 0 0 0 chr3 39082217 39082241 -188442337 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1094 329 18 37 chr3 39082241 39082314 -188442264 + L1PB4 LINE L1 11 84 -6765 2272 93 0 0 chr3 39082314 39082605 -188441973 - AluSc SINE Alu -18 291 1 1094 329 18 37 chr3 39082605 39083021 -188441557 + L1PB4 LINE L1 84 491 -6358 9804 207 40 26 chr3 39083307 39087709 -188436869 + L1PB4 LINE L1 651 5116 -1732 223 263 0 25 chr3 39088941 39089021 -188435557 + A-rich Low_complexity Low_complexity 5 82 0 1683 149 78 0 chr3 39090156 39090425 -188434153 - AluSg SINE Alu -20 290 1 22 35 0 0 chr3 39091978 39092007 -188432571 + AT_rich Low_complexity Low_complexity 1 29 0 194 0 0 37 chr3 39092096 39092123 -188432455 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 65 0 0 chr3 39092457 39092503 -188432075 - LTR66 LTR ERVL -171 439 394 4698 174 15 13 chr3 39092532 39093473 -188431105 + L1PB4 LINE L1 5097 6039 -809 237 86 0 0 chr3 39093478 39093513 -188431065 + L1MA3 LINE L1 6271 6305 0 1688 154 43 14 chr3 39093516 39093795 -188430783 + AluSx SINE Alu 1 287 -25 2009 100 0 0 chr3 39093829 39094089 -188430489 + AluSq SINE Alu 1 260 -53 376 169 0 0 chr3 39094090 39094155 -188430423 + AluSp/q SINE Alu 232 296 -7 3849 170 54 37 chr3 39094170 39095014 -188429564 + L1PB4 LINE L1 5999 6853 -5 369 281 116 17 chr3 39095158 39095313 -188429265 + MER5A DNA MER1_type 7 189 0 2122 218 42 44 chr3 39095803 39095842 -188428736 + MLT1D LTR MaLR 1 39 -466 2115 154 61 6 chr3 39095842 39096185 -188428393 - MLT1A1 LTR MaLR -3 362 1 2122 218 42 44 chr3 39096185 39096649 -188427929 + MLT1D LTR MaLR 39 503 -2 336 285 106 50 chr3 39097282 39097461 -188427117 + LTR50 LTR ERVL 17 205 -590 251 192 39 0 chr3 39097733 39097785 -188426793 + LTR33A LTR ERVL 468 521 -2 448 301 38 48 chr3 39097994 39098203 -188426375 - LTR16A1 LTR ERVL -5 452 246 188 177 290 0 chr3 39098482 39098544 -188426034 - L2 LINE L2 -1 3271 3192 1256 217 54 28 chr3 39098910 39098951 -188425627 - MLT2E LTR ERVL -14 614 576 1911 174 80 21 chr3 39098951 39099325 -188425253 + MSTD LTR MaLR 1 396 0 1256 217 54 28 chr3 39099325 39099785 -188424793 - MLT2E LTR ERVL -52 576 1 860 226 65 37 chr3 39100187 39100404 -188424174 + MIR SINE MIR 2 224 -38 632 171 147 59 chr3 39100548 39100718 -188423860 - MER3 DNA MER1_type -24 185 1 388 209 33 27 chr3 39101341 39101463 -188423115 + L1MC4a LINE L1 5484 5603 -518 1361 217 37 167 chr3 39101493 39102330 -188422248 + MER21B LTR ERV1 6 733 -130 748 256 0 50 chr3 39102312 39102511 -188422067 + MER63A DNA MER1_type 17 205 -5 * 796 296 60 28 chr3 39102520 39102937 -188421641 + L1MC4a LINE L1 5603 6038 -83 960 243 63 28 chr3 39103227 39103511 -188421067 - MER102a DNA MER1_type -2 328 35 223 286 0 0 chr3 39104816 39104872 -188419706 - MIR SINE MIR -108 154 99 801 253 50 17 chr3 39105452 39105693 -188418885 - L2 LINE L2 0 3313 3065 1278 223 32 72 chr3 39105707 39106083 -188418495 - MLT1A2 LTR MaLR -13 361 1 2194 230 12 68 chr3 39106117 39106691 -188417887 + MLT1F LTR MaLR 1 542 0 403 332 68 23 chr3 39106693 39106913 -188417665 - L2 LINE L2 -280 3033 2804 2397 268 47 17 chr3 39107042 39107998 -188416580 + L2 LINE L2 2177 3103 -210 185 62 0 31 chr3 39107998 39108030 -188416548 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2301 135 33 28 chr3 39108040 39108402 -188416176 + THE1B LTR MaLR 1 364 0 2397 268 47 17 chr3 39108402 39108537 -188416041 + L2 LINE L2 3111 3313 0 1346 68 0 11 chr3 39109446 39109623 -188414955 - AluY SINE Alu -3 308 134 21 0 0 0 chr3 39110210 39110231 -188414347 + AT_rich Low_complexity Low_complexity 1 21 0 757 272 41 66 chr3 39110479 39111041 -188413537 + L1M4 LINE L1 4802 5349 -797 277 244 100 11 chr3 39111479 39111569 -188413009 + MLT1K LTR MaLR 26 123 -465 530 250 87 53 chr3 39111742 39111950 -188412628 + MLT1K LTR MaLR 374 588 0 732 304 8 4 chr3 39113000 39113243 -188411335 + MIR SINE MIR 19 262 0 626 305 16 5 chr3 39113858 39114048 -188410530 - MIR SINE MIR -6 256 65 260 295 74 0 chr3 39114336 39114431 -188410147 - MIR SINE MIR -59 203 102 274 305 30 23 chr3 39114521 39114652 -188409926 + Charlie8 DNA MER1_type 89 220 -2197 735 221 111 42 chr3 39115061 39115468 -188409110 + MLT1J LTR MaLR 27 428 -22 417 309 149 25 chr3 39115809 39116285 -188408293 + L2 LINE L2 1599 2133 -1181 2395 93 0 3 chr3 39316451 39316762 -188207816 + AluSx SINE Alu 1 310 -2 1883 133 0 29 chr3 39317443 39317751 -188206827 + AluSq SINE Alu 1 299 -14 409 132 0 0 chr3 39317931 39317999 -188206579 + MER2 DNA MER2_type 139 206 -139 363 276 0 0 chr3 39318026 39318102 -188206476 + MER2 DNA MER2_type 270 345 0 441 0 0 0 chr3 39318987 39319036 -188205542 + (CA)n Simple_repeat Simple_repeat 2 50 0 324 0 0 0 chr3 39319120 39319156 -188205422 + (CA)n Simple_repeat Simple_repeat 2 37 0 224 180 33 0 chr3 39319184 39319245 -188205333 + (CA)n Simple_repeat Simple_repeat 2 64 0 1628 169 74 0 chr3 39319649 39319933 -188204645 - AluJo SINE Alu -7 305 1 587 328 16 19 chr3 39321530 39321786 -188202792 - L1ME LINE L1 -516 5605 5351 326 323 102 0 chr3 39321825 39321992 -188202586 + L1ME4a LINE L1 5766 5949 -172 1614 105 4 9 chr3 39322703 39322932 -188201646 + AluSg/x SINE Alu 83 310 0 502 221 38 8 chr3 39322949 39323080 -188201498 + L1ME4a LINE L1 5976 6110 -11 1044 143 18 18 chr3 39323093 39323261 -188201317 - FRAM SINE Alu -4 172 5 2250 95 14 0 chr3 39324286 39324580 -188199998 - AluSx SINE Alu -14 298 1 184 250 0 0 chr3 39324791 39324835 -188199743 - L2 LINE L2 -11 3261 3218 * 256 302 107 31 chr3 39324805 39324964 -188199614 - MIR SINE MIR -19 243 73 1510 169 95 21 chr3 39325181 39325519 -188199059 + MLT1A1 LTR MaLR 1 363 -2 233 339 0 17 chr3 39325694 39325812 -188198766 + L1M LINE L1 5254 5369 -2439 394 241 106 53 chr3 39326168 39326338 -188198240 - MIR3 SINE MIR 0 208 30 270 242 164 57 chr3 39326583 39326720 -188197858 - L1ME4a LINE L1 -155 5966 5845 1837 154 0 18 chr3 39326720 39326999 -188197579 + AluSx SINE Alu 9 282 -30 270 242 164 57 chr3 39326999 39327046 -188197532 - L1ME4a LINE L1 -276 5845 5804 1789 165 0 0 chr3 39327046 39327313 -188197265 + AluSx SINE Alu 33 299 -13 270 242 164 57 chr3 39327313 39327445 -188197133 - L1ME4a LINE L1 -317 5804 5615 326 110 61 24 chr3 39327463 39327545 -188197033 + CT-rich Low_complexity Low_complexity 1 85 0 1981 119 0 4 chr3 39327548 39327687 -188196891 - AluSx SINE Alu -44 268 129 216 0 0 0 chr3 39327687 39327711 -188196867 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1981 119 0 4 chr3 39327711 39327840 -188196738 - AluSx SINE Alu -183 129 1 24 0 0 0 chr3 39328008 39328032 -188196546 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr3 39328037 39328073 -188196505 + (TA)n Simple_repeat Simple_repeat 2 37 0 2058 151 0 0 chr3 39328076 39328388 -188196190 - AluSx SINE Alu 0 312 1 14165 213 32 11 chr3 39328388 39328749 -188195829 - L1PB1 LINE L1 -5 7565 7213 389 97 14 0 chr3 39328749 39328821 -188195757 + (TA)n Simple_repeat Simple_repeat 1 73 0 14165 213 32 11 chr3 39328821 39331594 -188192984 - L1PB1 LINE L1 -357 7213 3903 2408 68 7 3 chr3 39331594 39331886 -188192692 - AluY SINE Alu -18 293 1 14165 213 32 11 chr3 39331886 39333471 -188191107 - L1PB1 LINE L1 -3667 3903 2353 4882 176 70 17 chr3 39333480 39334409 -188190169 - L1PB1 LINE L1 -5883 1683 706 3900 177 54 5 chr3 39334942 39335699 -188188879 - L1MB5 LINE L1 -8 6166 5373 1889 280 162 13 chr3 39335747 39336665 -188187913 + L2 LINE L2 57 1111 -2203 2232 94 0 27 chr3 39336712 39337010 -188187568 - AluSx SINE Alu -20 292 3 206 269 19 0 chr3 39337014 39337066 -188187512 - L2 LINE L2 -234 3079 3027 2020 128 20 0 chr3 39337067 39337365 -188187213 - AluSx SINE Alu 0 312 9 806 197 22 22 chr3 39338291 39338469 -188186109 + L1M3 LINE L1 5478 5655 -525 2370 88 0 7 chr3 39338474 39338770 -188185808 + AluSx SINE Alu 1 294 -18 280 87 43 0 chr3 39338770 39338816 -188185762 + L1MB4 LINE L1 6131 6178 -2 399 228 81 0 chr3 39342042 39342165 -188182413 + Charlie8 DNA MER1_type 38 170 -2247 551 163 31 75 chr3 39343423 39343583 -188180995 - MIR SINE MIR -46 216 64 1509 167 118 7 chr3 39345479 39345784 -188178794 - MER44D DNA MER2_type 0 609 1 1366 171 5 0 chr3 39346490 39346707 -188177871 - MER58A DNA MER1_type 0 224 7 248 286 86 43 chr3 39347054 39347194 -188177384 - L1ME LINE L1 -574 5547 5402 529 173 0 18 chr3 39347846 39347956 -188176622 + L1MD3 LINE L1 7758 7865 -130 776 163 7 7 chr3 39348000 39348141 -188176437 + L1PB1 LINE L1 5998 6138 -13 21 0 0 0 chr3 39348143 39348164 -188176414 + AT_rich Low_complexity Low_complexity 1 21 0 857 182 136 6 chr3 39348807 39348983 -188175595 + MER63A DNA MER1_type 2 200 -10 301 226 0 0 chr3 39350001 39350063 -188174515 - L2 LINE L2 -50 3263 3202 313 323 85 15 chr3 39350211 39350412 -188174166 - L2 LINE L2 -337 2977 2763 281 243 110 44 chr3 39351015 39351151 -188173427 - MIR SINE MIR -20 242 98 222 37 0 0 chr3 39351215 39351239 -188173339 + (GGGAGA)n Simple_repeat Simple_repeat 1 51 0 222 37 0 0 chr3 39351239 39351266 -188173312 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 226 236 18 0 chr3 39351274 39351329 -188173249 + GA-rich Low_complexity Low_complexity 4 59 0 1757 209 83 5 chr3 39352495 39352658 -188171920 + MER47B DNA MER2_type 1 150 -2173 1469 142 63 32 chr3 39352658 39352911 -188171667 - AluJo SINE Alu -17 295 35 1757 209 83 5 chr3 39352911 39352927 -188171651 + MER47B DNA MER2_type 150 163 -2160 2060 151 56 58 chr3 39352927 39353137 -188171441 + MSTB1 LTR MaLR 4 213 -219 1957 130 0 21 chr3 39353137 39353421 -188171157 + AluJb SINE Alu 7 284 -28 539 29 0 14 chr3 39353421 39353491 -188171087 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2060 151 56 58 chr3 39353491 39353709 -188170869 + MSTB1 LTR MaLR 211 432 0 1757 209 83 5 chr3 39353709 39353915 -188170663 + MER47B DNA MER2_type 163 417 -1 347 189 151 19 chr3 39354270 39354376 -188170202 + MIR SINE MIR 65 184 -78 2606 58 0 3 chr3 39354523 39354832 -188169746 + AluY SINE Alu 1 308 -3 2931 7 0 0 chr3 39356659 39356968 -188167610 + AluYb8 SINE Alu 1 309 -9 374 0 0 21 chr3 39357642 39357689 -188166889 + (TG)n Simple_repeat Simple_repeat 1 46 0 2521 161 61 36 chr3 39358362 39358870 -188165708 + MER41B LTR ERV1 114 475 -11 1682 188 16 10 chr3 39360071 39360379 -188164199 + AluJo SINE Alu 1 310 -2 279 79 0 0 chr3 39361189 39361227 -188163351 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 283 256 49 0 chr3 39361230 39361312 -188163266 - L2 LINE L2 -9 3304 3219 1779 159 6 62 chr3 39361375 39361695 -188162883 + AluJb SINE Alu 1 302 -10 329 314 16 8 chr3 39362185 39362306 -188162272 + CT-rich Low_complexity Low_complexity 3 124 0 1756 142 37 24 chr3 39363942 39364238 -188160340 + AluJb SINE Alu 1 300 -12 2177 118 14 0 chr3 39364879 39365176 -188159402 - AluSx SINE Alu -11 301 1 2265 121 0 0 chr3 39365221 39365518 -188159060 - AluSg SINE Alu -12 298 2 465 308 107 18 chr3 39365634 39365962 -188158616 + L1ME4a LINE L1 5494 5850 -271 1900 148 48 9 chr3 39366036 39366367 -188158211 - MER2 DNA MER2_type 0 344 1 401 159 16 0 chr3 39366372 39366435 -188158143 + Tigger2 DNA MER2_type 4 67 -2651 * 2011 118 101 27 chr3 39366427 39366649 -188157929 + Tigger2 DNA MER2_type 2273 2534 -184 2155 129 10 6 chr3 39366649 39366960 -188157618 + AluSx SINE Alu 1 312 0 2011 118 101 27 chr3 39366960 39367102 -188157476 + Tigger2 DNA MER2_type 2534 2664 -54 2862 134 92 29 chr3 39367658 39367699 -188156879 - MER34C LTR ERV1 -2 583 546 4492 152 40 4 chr3 39367699 39368396 -188156182 - MER72 LTR ERV1 0 722 1 2862 134 92 29 chr3 39368396 39368899 -188155679 - MER34C LTR ERV1 -39 546 5 1475 202 75 62 chr3 39369115 39369570 -188155008 - MLT1C LTR MaLR -4 463 3 379 241 106 7 chr3 39369926 39370067 -188154511 - L1MC5 LINE L1 -48 7913 7759 337 306 66 10 chr3 39370077 39370273 -188154305 + L1ME4a LINE L1 5861 6067 -54 1785 219 13 11 chr3 39371537 39371916 -188152662 + L1MDb LINE L1 659 1038 -5371 941 182 19 0 chr3 39371925 39372084 -188152494 + MER58B DNA MER1_type 180 341 0 1286 235 106 37 chr3 39372776 39373210 -188151368 - MER110A LTR ERV1 0 468 5 1966 120 27 20 chr3 39373226 39373525 -188151053 + AluSp SINE Alu 1 301 -12 183 268 0 0 chr3 39374953 39374994 -188149584 - L2 LINE L2 -12 3301 3261 293 281 75 20 chr3 39375080 39375226 -188149352 - MER20 DNA MER1_type -1 218 65 302 0 0 26 chr3 39375296 39375335 -188149243 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1665 159 11 11 chr3 39375336 39375519 -188149059 - AluJb SINE Alu 0 310 125 207 24 24 48 chr3 39375519 39375561 -188149017 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1665 159 11 11 chr3 39375561 39375687 -188148891 - AluJb SINE Alu -184 126 1 308 261 113 91 chr3 39376339 39376509 -188148069 - L2 LINE L2 -58 3255 3077 2028 122 3 7 chr3 39376509 39376812 -188147766 - AluSx SINE Alu -10 302 1 308 261 113 91 chr3 39376812 39376871 -188147707 - L2 LINE L2 -236 3077 3021 326 41 0 20 chr3 39377545 39377594 -188146984 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr3 39379991 39380012 -188144566 + AT_rich Low_complexity Low_complexity 1 21 0 314 246 8 76 chr3 39382788 39382906 -188141672 + L2 LINE L2 2904 3013 -300 1991 160 0 0 chr3 39383248 39383542 -188141036 + AluJo SINE Alu 3 296 -16 868 121 8 30 chr3 39383605 39383737 -188140841 - FLAM_C SINE Alu -4 129 1 2333 87 10 7 chr3 39384309 39384618 -188139960 + AluY SINE Alu 1 310 -1 1140 209 146 92 chr3 39384804 39385291 -188139287 - MER34B LTR ERV1 -48 517 5 229 321 69 63 chr3 39385303 39385462 -188139116 - MIR3 SINE MIR -46 162 3 1795 151 36 4 chr3 39386291 39386569 -188138009 - AluJb SINE Alu -25 287 1 870 255 55 19 chr3 39386788 39387098 -188137480 + L1MC4a LINE L1 5558 5878 -1930 1061 116 74 5 chr3 39387183 39387372 -188137206 - L1MA8 LINE L1 -5 6286 6085 2386 129 6 18 chr3 39387949 39388290 -188136288 - MER1B DNA MER1_type 0 337 1 546 247 140 69 chr3 39388720 39389304 -188135274 + L2 LINE L2 2630 3268 -45 211 216 0 0 chr3 39389316 39389353 -188135225 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 198 161 196 18 chr3 39390375 39390431 -188134147 + MIR3 SINE MIR 91 156 -52 2690 258 108 36 chr3 39391286 39392732 -188131846 + L2 LINE L2 1784 3312 -1 1665 158 4 4 chr3 39395067 39395327 -188129251 - AluSx SINE Alu -15 297 38 1417 190 125 67 chr3 39395714 39396146 -188128432 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr3 39398055 39398085 -188126493 + AT_rich Low_complexity Low_complexity 1 30 0 206 299 90 0 chr3 39398110 39398177 -188126401 - MIR3 SINE MIR -8 200 128 512 196 176 0 chr3 39398382 39398484 -188126094 + FLAM_C SINE Alu 1 120 -23 297 0 0 0 chr3 39398484 39398517 -188126061 + (TAA)n Simple_repeat Simple_repeat 2 34 0 220 210 74 25 chr3 39398699 39398780 -188125798 + L2 LINE L2 2625 2709 -605 351 0 0 0 chr3 39398857 39398874 -188125704 + (CA)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr3 39398874 39398913 -188125665 + (CA)n Simple_repeat Simple_repeat 1 39 0 1001 209 91 88 chr3 39399655 39400119 -188124459 + L1MC4 LINE L1 7450 7914 -128 2468 98 42 31 chr3 39400119 39400475 -188124103 + THE1B LTR MaLR 1 360 -4 231 273 0 30 chr3 39400547 39400613 -188123965 + GA-rich Low_complexity Low_complexity 3 66 0 345 200 40 48 chr3 39400613 39400677 -188123901 + L1MC4 LINE L1 7919 7983 -59 2412 95 174 8 chr3 39400677 39401044 -188123534 + MSTA LTR MaLR 1 428 0 345 200 40 48 chr3 39401044 39401104 -188123474 + L1MC4 LINE L1 7983 8042 0 1269 164 81 77 chr3 39402028 39402338 -188122240 + AluJo SINE Alu 1 311 -1 385 228 108 44 chr3 39402802 39402960 -188121618 + MIR SINE MIR 76 243 -19 454 254 119 11 chr3 39403256 39403441 -188121137 - MIR SINE MIR -35 227 23 301 321 33 54 chr3 39403901 39404085 -188120493 + L1ME LINE L1 5638 5817 -304 790 272 52 0 chr3 39404163 39404354 -188120224 + MER58A DNA MER1_type 1 201 -23 1809 174 0 7 chr3 39404369 39404650 -188119928 - AluJo SINE Alu -23 289 11 2268 102 0 13 chr3 39404679 39404992 -188119586 + AluSx SINE Alu 1 309 -3 23 54 0 0 chr3 39405050 39405087 -188119491 + AT_rich Low_complexity Low_complexity 1 37 0 228 211 127 14 chr3 39405094 39405165 -188119413 - L1ME LINE L1 -510 5611 5533 2322 98 20 0 chr3 39405337 39405643 -188118935 - AluSp SINE Alu -1 312 1 2299 229 103 143 chr3 39405909 39407572 -188117006 + L2 LINE L2 812 2407 -907 554 273 126 39 chr3 39407601 39407832 -188116746 + MLT1H LTR MaLR 20 298 -251 219 117 83 50 chr3 39408111 39408171 -188116407 + A-rich Low_complexity Low_complexity 3 64 0 555 267 93 40 chr3 39408179 39408364 -188116214 + L2 LINE L2 2407 2616 -698 2354 86 0 3 chr3 39408364 39408656 -188115922 - AluSg SINE Alu -19 291 1 555 267 93 40 chr3 39408656 39408770 -188115808 + L2 LINE L2 2616 2722 -592 468 214 205 14 chr3 39408922 39409132 -188115446 - L1M4c LINE L1 -5077 1307 1058 5173 141 88 14 chr3 39409146 39410240 -188114338 - L1MA4A LINE L1 0 7005 5829 1399 184 8 8 chr3 39410341 39410586 -188113992 - AluJb SINE Alu -45 267 23 9054 164 55 88 chr3 39410587 39411848 -188112730 - L1MA4A LINE L1 -1296 5552 4251 655 202 0 0 chr3 39411848 39411957 -188112621 - FLAM_A SINE Alu -10 132 24 236 149 27 135 chr3 39411957 39412031 -188112547 - AluSp SINE Alu -123 180 115 9054 164 55 88 chr3 39412031 39412425 -188112153 - L1MA4A LINE L1 -2596 4252 3847 2160 110 0 0 chr3 39412425 39412717 -188111861 - AluSg SINE Alu -18 292 1 9054 164 55 88 chr3 39412717 39413298 -188111280 - L1MA4A LINE L1 -3001 3847 3212 8176 210 99 15 chr3 39413298 39413518 -188111060 - L1MA4A LINE L1 -3842 3006 2806 2261 104 7 0 chr3 39413518 39413826 -188110752 - AluY SINE Alu -1 310 1 8176 210 99 15 chr3 39413826 39416283 -188108295 - L1MA4A LINE L1 -4042 2806 4 523 196 191 16 chr3 39416326 39416555 -188108023 - L1M4c LINE L1 -4971 1332 777 242 256 76 87 chr3 39417654 39417826 -188106752 - L1ME3 LINE L1 -28 6134 5965 259 254 153 34 chr3 39418003 39418180 -188106398 - L1ME3 LINE L1 -475 5695 5498 302 147 0 59 chr3 39418275 39418343 -188106235 - L1ME3 LINE L1 -863 5283 5220 973 204 114 29 chr3 39418400 39418708 -188105870 + L1M4 LINE L1 4701 5034 -1112 857 168 8 0 chr3 39419112 39419243 -188105335 - FRAM SINE Alu -47 129 1 2321 62 0 36 chr3 39419269 39419575 -188105003 + AluSg SINE Alu 1 295 -15 1601 98 18 0 chr3 39419577 39419802 -188104776 + AluSg/x SINE Alu 77 305 -5 654 248 105 0 chr3 39420433 39420589 -188103989 + FRAM SINE Alu 1 170 0 259 266 59 59 chr3 39420896 39421107 -188103471 + L1ME1 LINE L1 1514 1771 -4863 * 508 263 94 91 chr3 39421100 39421492 -188103086 + L1ME1 LINE L1 2774 3163 -3481 2357 98 0 6 chr3 39421492 39421807 -188102771 + AluSq SINE Alu 1 313 0 508 263 94 91 chr3 39421807 39422694 -188101884 + L1ME1 LINE L1 3163 4057 -2587 977 261 164 44 chr3 39422701 39423832 -188100746 + L1ME1 LINE L1 4305 5588 -1056 408 242 54 89 chr3 39424030 39424645 -188099933 + L1ME1 LINE L1 5914 6608 -60 1823 118 8 0 chr3 39424795 39425058 -188099520 + AluSg SINE Alu 46 310 0 628 268 85 24 chr3 39425131 39425377 -188099201 + L2 LINE L2 1546 1806 -1508 2552 60 7 0 chr3 39425377 39425679 -188098899 - AluSq SINE Alu -9 304 1 330 264 57 9 chr3 39425875 39425981 -188098597 + L1MC5 LINE L1 7317 7427 -534 387 264 28 0 chr3 39426053 39426159 -188098419 - MIR SINE MIR -21 241 133 749 184 145 6 chr3 39426159 39426338 -188098240 - MER82 DNA MER2_type -251 402 199 863 228 66 0 chr3 39426714 39426911 -188097667 - MER82 DNA MER2_type 0 653 444 286 268 78 56 chr3 39426942 39427084 -188097494 + MIR SINE MIR 2 146 -116 343 237 40 0 chr3 39427161 39427237 -188097341 - MER82 DNA MER2_type -574 79 1 877 147 7 7 chr3 39427356 39427499 -188097079 - MER82 DNA MER2_type -510 143 1 5329 66 31 1 chr3 39427629 39428277 -188096301 - PABL_B LTR ERV1 0 667 1 306 233 27 0 chr3 39428304 39428377 -188096201 - MIR SINE MIR -10 252 178 683 265 39 11 chr3 39428413 39428594 -188095984 - MIR SINE MIR -7 255 70 2372 85 3 0 chr3 39428762 39429056 -188095522 - AluSp SINE Alu -18 295 1 242 248 51 0 chr3 39429933 39430070 -188094508 + (TATAA)n Simple_repeat Simple_repeat 1 144 0 2401 89 0 6 chr3 39430085 39430400 -188094178 - AluSp SINE Alu 0 313 1 2404 96 0 0 chr3 39431003 39431304 -188093274 - AluSc SINE Alu -8 301 1 1917 144 38 27 chr3 39431445 39431789 -188092789 + THE1B LTR MaLR 1 428 0 2182 125 7 0 chr3 39432775 39433080 -188091498 - AluSx SINE Alu -5 307 1 2342 97 10 0 chr3 39434000 39434309 -188090269 + AluSx SINE Alu 1 312 0 1074 207 55 12 chr3 39434976 39435232 -188089346 + L1MC4 LINE L1 7765 8031 -11 388 274 77 0 chr3 39435384 39435501 -188089077 + MIR SINE MIR 46 171 -91 2197 92 3 3 chr3 39436152 39436436 -188088142 + AluSp SINE Alu 15 298 -15 1124 43 0 7 chr3 39436437 39436577 -188088001 + L1PA4 LINE L1 5865 6003 -152 797 189 90 56 chr3 39438344 39438577 -188086001 - L1ME3 LINE L1 -43 6119 5879 746 234 52 5 chr3 39438602 39438794 -188085784 - L1ME3 LINE L1 -349 5813 5613 2460 88 0 0 chr3 39439463 39439770 -188084808 - AluSx SINE Alu -5 307 1 1049 160 128 0 chr3 39440444 39440631 -188083947 - MER46A DNA MER2_type 0 236 26 23 105 0 0 chr3 39440815 39440901 -188083677 + AT_rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr3 39443622 39443644 -188080934 + AT_rich Low_complexity Low_complexity 1 22 0 338 222 0 0 chr3 39443649 39443712 -188080866 - MER5A DNA MER1_type -83 106 44 847 214 34 6 chr3 39443745 39443923 -188080655 - MER5A DNA MER1_type 0 189 7 1078 149 47 28 chr3 39444114 39444328 -188080250 + L1MA2 LINE L1 6087 6304 0 7325 258 105 30 chr3 39445314 39446075 -188078503 + L1MB7 LINE L1 1325 2027 -4389 1998 147 7 3 chr3 39446075 39446374 -188078204 - AluSx SINE Alu -12 300 1 7325 258 105 30 chr3 39446374 39448391 -188076187 + L1MB7 LINE L1 2027 3890 -2526 1119 188 0 0 chr3 39448391 39448556 -188076022 - FAM SINE Alu -10 165 1 7325 258 105 30 chr3 39448556 39449867 -188074711 + L1MB7 LINE L1 3890 5891 -525 2268 122 0 3 chr3 39449872 39450184 -188074394 + AluSx SINE Alu 1 311 -1 852 295 80 23 chr3 39450185 39450767 -188073811 + L2 LINE L2 2707 3312 -1 293 257 100 43 chr3 39450875 39451015 -188073563 + L2 LINE L2 2673 2820 -494 1050 208 0 0 chr3 39451238 39451416 -188073162 - MER45A DNA AcHobo 0 178 1 527 148 87 17 chr3 39452269 39452384 -188072194 + MER112 DNA MER1_type 132 254 -6 864 141 0 49 chr3 39459797 39459939 -188064639 - AluJo SINE Alu -177 135 1 225 240 0 40 chr3 39461274 39461349 -188063229 + A-rich Low_complexity Low_complexity 2 73 0 217 194 65 81 chr3 39461516 39461578 -188063000 - L2 LINE L2 -26 3246 3186 315 344 8 15 chr3 39461872 39462003 -188062575 + MIR SINE MIR 119 248 -14 275 371 0 0 chr3 39462971 39463103 -188061475 + MER117 DNA MER1_type 39 170 -27 262 243 94 87 chr3 39463225 39463513 -188061065 + L1MC3 LINE L1 5815 6104 -1681 * 1218 190 78 18 chr3 39463305 39463589 -188060989 + L1MB7 LINE L1 5884 6184 0 546 285 13 7 chr3 39463848 39463999 -188060579 + L2 LINE L2 2169 2320 -994 2017 216 65 17 chr3 39464002 39464464 -188060114 + MLT1D LTR MaLR 4 487 -18 1481 260 139 33 chr3 39464478 39465078 -188059500 + L2 LINE L2 2320 2855 -458 187 53 26 26 chr3 39465078 39465116 -188059462 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2047 129 0 0 chr3 39465118 39465398 -188059180 - AluSx SINE Alu -32 280 1 1481 260 139 33 chr3 39465398 39465653 -188058925 + L2 LINE L2 2855 3274 -39 299 57 0 0 chr3 39466642 39466677 -188057901 + MER4E LTR ERV1 655 689 -77 198 0 0 0 chr3 39466677 39466699 -188057879 + (A)n Simple_repeat Simple_repeat 1 22 0 812 204 149 0 chr3 39466852 39467033 -188057545 - MER3 DNA MER1_type -1 208 1 528 193 34 0 chr3 39467767 39467886 -188056692 + MER5A DNA MER1_type 16 138 -51 308 231 13 0 chr3 39467916 39467994 -188056584 - L1ME2 LINE L1 -4 6160 6082 689 183 38 0 chr3 39468022 39468153 -188056425 - L1MB2 LINE L1 -54 6117 5982 195 244 0 0 chr3 39468156 39468197 -188056381 + MER5A DNA MER1_type 143 183 -6 220 121 0 0 chr3 39468871 39468904 -188055674 - MIR SINE MIR -11 251 219 2293 122 0 0 chr3 39469817 39470128 -188054450 - AluY SINE Alu 0 311 1 753 269 67 97 chr3 39471042 39471757 -188052821 + L1MC4a LINE L1 5266 5959 -1849 23 0 0 0 chr3 39471757 39471780 -188052798 + AT_rich Low_complexity Low_complexity 1 23 0 1981 141 117 69 chr3 39472291 39472316 -188052262 + MLT1D LTR MaLR 5 27 -478 1968 122 62 3 chr3 39472316 39472604 -188051974 + AluSx SINE Alu 1 305 -7 1981 141 117 69 chr3 39472604 39473055 -188051523 + MLT1D LTR MaLR 27 504 -1 193 258 0 76 chr3 39473482 39473548 -188051030 - L2 LINE L2 -11 3261 3201 25 83 0 0 chr3 39474560 39474620 -188049958 + AT_rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr3 39475239 39475271 -188049307 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr3 39475309 39475338 -188049240 + AT_rich Low_complexity Low_complexity 1 29 0 637 301 143 49 chr3 39477741 39478002 -188046576 + MLT1L LTR MaLR 1 236 -379 2242 110 3 7 chr3 39478002 39478312 -188046266 - AluSc SINE Alu 0 309 1 637 301 143 49 chr3 39478312 39478530 -188046048 + MLT1L LTR MaLR 236 432 -183 234 0 0 0 chr3 39478530 39478556 -188046022 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1518 193 44 4 chr3 39478559 39478829 -188045749 - AluJb SINE Alu -29 283 3 637 301 143 49 chr3 39478829 39478898 -188045680 + MLT1L LTR MaLR 433 606 -9 1117 156 138 45 chr3 39480208 39480497 -188044081 + L1ME1 LINE L1 5739 6054 -112 1341 145 18 23 chr3 39480497 39480718 -188043860 - MER46A DNA MER2_type 0 236 17 348 183 26 0 chr3 39480773 39480859 -188043719 + L1ME1 LINE L1 6089 6184 0 268 164 18 18 chr3 39481012 39481067 -188043511 - LTR33A LTR ERVL -25 498 444 2157 112 3 14 chr3 39481123 39481417 -188043161 - AluSg SINE Alu -19 291 1 2165 99 16 35 chr3 39481759 39482073 -188042505 + AluSc SINE Alu 1 308 -1 2385 95 0 0 chr3 39483179 39483485 -188041093 - AluSg SINE Alu -4 306 1 225 0 0 0 chr3 39485396 39485421 -188039157 + (T)n Simple_repeat Simple_repeat 1 25 0 2484 57 10 3 chr3 39485443 39485739 -188038839 + AluY SINE Alu 1 298 -13 1822 173 0 10 chr3 39486168 39486469 -188038109 + AluJb SINE Alu 1 298 -14 1774 174 0 17 chr3 39486865 39487164 -188037414 + AluJb SINE Alu 1 294 -18 805 331 49 39 chr3 39487227 39487713 -188036865 + L2 LINE L2 2819 3309 -4 936 161 1 105 chr3 39487769 39488024 -188036554 + L1MB2 LINE L1 5935 6164 -7 1181 193 15 0 chr3 39488416 39488618 -188035960 + AluJo SINE Alu 87 291 -21 2302 91 0 26 chr3 39489422 39489730 -188034848 + AluSx SINE Alu 1 300 -12 625 264 137 18 chr3 39490257 39490484 -188034094 - MIR SINE MIR 0 262 9 229 207 27 140 chr3 39490528 39490678 -188033900 + HAL1b LINE L1 597 729 -619 481 181 14 116 chr3 39490678 39490773 -188033805 + MER96B DNA MER1_type? 1 79 -338 950 223 6 0 chr3 39490773 39490939 -188033639 - FAM SINE Alu -8 167 1 481 181 14 116 chr3 39490939 39490981 -188033597 + MER96B DNA MER1_type? 79 124 -293 201 174 43 14 chr3 39490986 39491055 -188033523 + GA-rich Low_complexity Low_complexity 3 73 0 715 217 89 84 chr3 39491109 39491533 -188033045 + MLT1A2 LTR MaLR 1 374 0 691 148 15 163 chr3 39491533 39491736 -188032842 - MER96B DNA MER1_type? -242 175 3 2064 115 14 7 chr3 39491758 39492054 -188032524 - AluSg SINE Alu -12 298 1 21 0 0 0 chr3 39492490 39492511 -188032067 + GC_rich Low_complexity Low_complexity 1 21 0 1488 167 69 4 chr3 39492928 39493203 -188031375 + AluSx SINE Alu 1 293 -19 201 39 0 0 chr3 39493358 39493384 -188031194 + (A)n Simple_repeat Simple_repeat 1 26 0 960 161 0 0 chr3 39494631 39494774 -188029804 + AluSg/x SINE Alu 132 274 -38 707 106 120 148 chr3 39494790 39494938 -188029640 - Tigger2 DNA MER2_type -2507 211 69 2127 108 3 0 chr3 39494938 39495225 -188029353 - AluSx SINE Alu -24 288 1 707 106 120 148 chr3 39495225 39495293 -188029285 - Tigger2 DNA MER2_type -2649 69 1 632 134 17 17 chr3 39495485 39495604 -188028974 + L1MB2 LINE L1 6042 6160 -11 1727 133 32 7 chr3 39595765 39596043 -187928535 - AluSg SINE Alu -13 297 13 8598 104 30 12 chr3 39596043 39597298 -187927280 + MER41B-int LTR ERV1 4669 5946 0 3768 138 44 13 chr3 39597298 39597914 -187926664 + MER41B LTR ERV1 1 635 0 2251 134 24 21 chr3 39597950 39598324 -187926254 - THE1C LTR MaLR 0 375 1 380 245 80 18 chr3 39598728 39598891 -187925687 + L1MC4 LINE L1 7842 8014 -28 2045 139 14 0 chr3 39598891 39599186 -187925392 - AluSx SINE Alu -13 299 1 1369 171 13 81 chr3 39599238 39599548 -187925030 - AluJo SINE Alu -23 289 1 2069 124 7 0 chr3 39599576 39599858 -187924720 + AluSg SINE Alu 1 284 -26 2251 80 0 14 chr3 39599866 39600185 -187924393 + AluSg SINE Alu 1 315 0 1891 157 20 0 chr3 39600195 39600488 -187924090 + AluJo SINE Alu 1 299 -13 571 211 111 80 chr3 39600488 39600687 -187923891 + L1ME3A LINE L1 5939 6143 -27 2119 92 3 57 chr3 39601233 39601549 -187923029 + AluSp SINE Alu 1 299 -14 368 313 156 35 chr3 39601560 39601931 -187922647 + L2 LINE L2 2855 3270 -2 26 0 0 0 chr3 39602129 39602155 -187922423 + AT_rich Low_complexity Low_complexity 1 26 0 206 135 0 27 chr3 39602156 39602193 -187922385 + (GAGAA)n Simple_repeat Simple_repeat 5 40 0 1783 171 0 11 chr3 39602200 39602487 -187922091 - AluJb SINE Alu -17 295 12 343 250 26 0 chr3 39602521 39602597 -187921981 + MER2 DNA MER2_type 267 344 -1 2106 115 11 0 chr3 39602649 39602962 -187921616 - AluSx SINE Alu 0 318 3 2030 135 51 38 chr3 39604135 39604505 -187920073 + THE1C LTR MaLR 1 375 0 1922 154 3 7 chr3 39604513 39604819 -187919759 - AluJb SINE Alu -7 305 1 452 139 0 0 chr3 39604983 39605055 -187919523 - LTR24B LTR ERV1 -7 569 498 * 894 230 90 50 chr3 39605024 39605424 -187919154 - LTR56 LTR ERV1 -21 424 9 710 182 7 27 chr3 39606006 39606154 -187918424 + MER31B LTR ERV1 1 145 -321 1557 181 0 29 chr3 39606155 39606436 -187918142 + AluJb SINE Alu 1 273 -39 1040 82 24 6 chr3 39606437 39606607 -187917971 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 412 191 45 0 chr3 39606614 39606703 -187917875 + AluSg/x SINE Alu 215 307 -3 453 36 0 0 chr3 39606703 39606758 -187917820 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1353 167 110 17 chr3 39606759 39607058 -187917520 + MER31B LTR ERV1 140 466 0 628 210 68 139 chr3 39607172 39607344 -187917234 + MER110A LTR ERV1 168 308 -160 1210 167 196 54 chr3 39607344 39607787 -187916791 + LTR54 LTR ERV1 5 510 0 628 210 68 139 chr3 39607787 39607938 -187916640 + MER110A LTR ERV1 308 468 0 1257 164 89 115 chr3 39608006 39608468 -187916110 + LTR7 LTR ERV1 1 450 0 23906 172 18 21 chr3 39608468 39616313 -187908265 + HERVH LTR ERV1 1 7713 0 1419 161 106 69 chr3 39616313 39616625 -187907953 + LTR7 LTR ERV1 1 335 -115 2426 78 3 0 chr3 39616625 39616921 -187907657 + AluY SINE Alu 1 297 -14 1419 161 106 69 chr3 39616921 39617042 -187907536 + LTR7 LTR ERV1 335 450 0 4392 116 21 45 chr3 39617104 39617810 -187906768 - LTR8 LTR ERV1 -2 689 1 2055 198 128 48 chr3 39617854 39618525 -187906053 + MER50 LTR ERV1 10 734 0 325 326 138 16 chr3 39619143 39619201 -187905377 - L1ME4a LINE L1 -1 6120 6070 2098 161 93 65 chr3 39619201 39619697 -187904881 - LTR54 LTR ERV1 0 510 1 325 326 138 16 chr3 39619697 39619942 -187904636 - L1ME4a LINE L1 -51 6070 5780 33 0 0 0 chr3 39619968 39620001 -187904577 + AT_rich Low_complexity Low_complexity 1 33 0 2344 58 31 0 chr3 39620077 39620369 -187904209 - AluY SINE Alu -10 301 1 232 352 57 39 chr3 39620396 39620677 -187903901 - L1ME4a LINE L1 -540 5581 5296 1317 233 74 45 chr3 39620679 39621165 -187903413 - LTR24B LTR ERV1 -7 569 70 1873 154 38 7 chr3 39621297 39621589 -187902989 - AluJb SINE Alu -11 301 1 2125 133 39 33 chr3 39621884 39622246 -187902332 - THE1B LTR MaLR 0 364 1 867 222 0 14 chr3 39622484 39622700 -187901878 + L1MA4 LINE L1 6084 6296 -4 289 271 126 62 chr3 39622849 39623270 -187901308 + HAL1 LINE L1 1008 1455 -1052 2167 154 55 3 chr3 39623302 39623685 -187900893 - MER57A LTR ERV1 0 403 1 729 275 81 14 chr3 39623756 39624145 -187900433 - MLT1J LTR MaLR -52 459 1 374 302 122 9 chr3 39624148 39624492 -187900086 + HAL1 LINE L1 1483 1946 -561 2392 97 0 3 chr3 39624706 39625016 -187899562 - AluSc SINE Alu 0 309 1 973 286 33 31 chr3 39625198 39625449 -187899129 + L1MC4a LINE L1 5392 5641 -2167 2292 94 82 15 chr3 39625449 39625790 -187898788 - THE1B LTR MaLR 0 364 1 973 286 33 31 chr3 39625790 39625804 -187898774 + L1MC4a LINE L1 5641 5653 -2155 4045 126 47 83 chr3 39625804 39626619 -187897959 - LTR1 LTR ERV1 0 785 1 973 286 33 31 chr3 39626619 39626712 -187897866 + L1MC4a LINE L1 5653 5752 -2056 1357 199 62 33 chr3 39626749 39627085 -187897493 - MLT1A1 LTR MaLR -19 346 1 261 217 116 0 chr3 39627092 39627161 -187897417 + L1MC4a LINE L1 5830 5906 -1902 2971 72 43 65 chr3 39627244 39627687 -187896891 - LTR3b LTR ERVK -4 433 1 1404 157 0 10 chr3 39627725 39627980 -187896598 - HERVK3 LTR ERVK -373 5572 5130 * 5507 179 2 5 chr3 39627966 39629178 -187895400 - HERVK3 LTR ERVK -4104 3139 1859 542 162 10 30 chr3 39629170 39629269 -187895309 - HERVK3 LTR ERVK -5826 1417 1321 * 898 197 50 20 chr3 39629257 39629455 -187895123 - HERVK3 LTR ERVK -6563 680 477 772 136 11 24 chr3 39629452 39629640 -187894938 - HERVK3 LTR ERVK -6971 272 51 * 2794 94 102 0 chr3 39629749 39630142 -187894436 - LTR3b LTR ERVK -4 433 1 339 184 69 23 chr3 39630152 39630239 -187894339 + MLT1I LTR MaLR 90 180 -229 766 294 102 10 chr3 39630251 39630544 -187894034 + MLT1I LTR MaLR 90 409 0 249 196 223 76 chr3 39630547 39630594 -187893984 + L1MC4a LINE L1 5905 5944 -1864 3549 111 0 34 chr3 39630594 39630622 -187893956 - MER75 DNA T2_type 0 514 487 2001 151 3 3 chr3 39630622 39630934 -187893644 + AluSx SINE Alu 1 312 0 3549 111 0 34 chr3 39630934 39631436 -187893142 - MER75 DNA T2_type -27 487 2 249 196 223 76 chr3 39631436 39631612 -187892966 + L1MC4a LINE L1 5944 6161 -1647 415 168 192 8 chr3 39631624 39631749 -187892829 + HAL1 LINE L1 2294 2441 -66 219 270 68 101 chr3 39632361 39632448 -187892130 + L2 LINE L2 2616 2704 -610 2267 61 4 7 chr3 39632448 39632747 -187891831 - AluY SINE Alu 0 300 3 219 270 68 101 chr3 39632747 39632895 -187891683 + L2 LINE L2 2704 2844 -470 2438 90 3 0 chr3 39632902 39633246 -187891332 - AluSp SINE Alu 0 345 1 405 0 0 0 chr3 39633294 39633339 -187891239 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1694 153 33 0 chr3 39633339 39633613 -187890965 - AluJb SINE Alu -29 283 1 526 255 127 86 chr3 39633664 39634025 -187890553 + L2 LINE L2 2897 3272 0 2144 123 0 3 chr3 39634053 39634355 -187890223 + AluSx SINE Alu 1 301 -11 1751 184 3 19 chr3 39635296 39635611 -187888967 + AluJb SINE Alu 1 310 -2 225 132 0 0 chr3 39635810 39635848 -187888730 + (TAAAA)n Simple_repeat Simple_repeat 4 41 0 902 220 94 4 chr3 39636019 39636431 -187888147 - L1MC4 LINE L1 -469 7419 6956 399 292 95 6 chr3 39636448 39636706 -187887872 + L2 LINE L2 2786 3070 -243 1109 97 7 0 chr3 39636720 39636864 -187887714 + AluSg SINE Alu 1 145 -165 22059 100 27 22 chr3 39636964 39637327 -187887251 - MER57-int LTR ERV1 -1267 4679 4319 2340 106 0 3 chr3 39637327 39637630 -187886948 + AluSg SINE Alu 2 303 -7 22059 100 27 22 chr3 39637630 39638161 -187886417 - MER57-int LTR ERV1 -1627 4319 3792 2063 120 33 13 chr3 39638161 39638460 -187886118 - AluSx SINE Alu -2 310 6 22059 100 27 22 chr3 39638460 39639177 -187885401 - MER57-int LTR ERV1 -2154 3792 3080 4770 72 5 3 chr3 39639177 39639798 -187884780 - L1PA8 LINE L1 -3 6169 5548 22059 100 27 22 chr3 39639798 39639887 -187884691 - MER57-int LTR ERV1 -2866 3080 2993 1837 171 7 3 chr3 39639887 39640191 -187884387 - AluJb SINE Alu -7 305 1 22059 100 27 22 chr3 39640191 39641197 -187883381 - MER57-int LTR ERV1 -2953 2993 1949 2368 91 7 0 chr3 39641197 39641495 -187883083 + AluSp SINE Alu 1 300 -13 22059 100 27 22 chr3 39641495 39642094 -187882484 - MER57-int LTR ERV1 -3997 1949 1354 811 101 34 0 chr3 39642100 39642219 -187882359 - MER57-int LTR ERV1 -5710 1827 1705 * 4354 120 22 13 chr3 39642207 39642841 -187881737 - MER57-int LTR ERV1 -5306 640 1 240 228 51 0 chr3 39643031 39643110 -187881468 - L1MDa LINE L1 -4940 1189 1107 380 234 36 36 chr3 39643168 39643305 -187881273 - L1MDa LINE L1 -5088 1031 895 1490 159 35 12 chr3 39643413 39643670 -187880908 + AluJo SINE Alu 14 276 -36 909 140 13 25 chr3 39643805 39643962 -187880616 - AluJb SINE Alu -14 298 144 7581 60 0 12 chr3 39644186 39645741 -187878837 - SVA Other Other -799 1381 1 267 156 148 133 chr3 39647723 39647851 -187876727 - MER5A DNA MER1_type -51 138 9 475 256 0 16 chr3 39649037 39649158 -187875420 + L2 LINE L2 3150 3268 -4 336 259 119 70 chr3 39649338 39649539 -187875039 + MLT1L LTR MaLR 170 380 -235 352 213 38 0 chr3 39649767 39649847 -187874731 - MIR SINE MIR -67 195 113 2556 72 0 3 chr3 39650023 39650330 -187874248 + AluY SINE Alu 1 306 -5 1857 147 11 0 chr3 39650434 39650707 -187873871 + AluSx SINE Alu 1 276 -36 542 145 43 43 chr3 39650744 39650840 -187873738 + MLT1B LTR MaLR 4 102 -288 2506 15 0 0 chr3 39650840 39651111 -187873467 + AluYb8 SINE Alu 34 304 -14 542 145 43 43 chr3 39651111 39651131 -187873447 + MLT1B LTR MaLR 101 120 -270 387 305 13 26 chr3 39651282 39651436 -187873142 - MIR3 SINE MIR -16 192 41 769 133 17 31 chr3 39652828 39653244 -187871334 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 249 33 0 0 chr3 39653295 39653325 -187871253 + (CATCC)n Simple_repeat Simple_repeat 1 30 0 2250 105 24 0 chr3 39653609 39653903 -187870675 - AluSg SINE Alu -9 301 1 2329 153 23 0 chr3 39653903 39654289 -187870289 + L1MB3 LINE L1 5788 6182 -1 363 171 37 0 chr3 39654533 39654615 -187869963 - MLT1J LTR MaLR 0 555 471 874 203 76 10 chr3 39654625 39654822 -187869756 - MLT1G1 LTR MaLR -379 216 7 317 256 29 58 chr3 39655191 39655328 -187869250 + MER5B DNA MER1_type 1 133 -45 253 239 14 0 chr3 39655507 39655578 -187869000 - MIR3 SINE MIR -11 197 126 478 216 17 35 chr3 39655578 39655694 -187868884 - MER81 DNA DNA 0 114 1 4445 171 22 6 chr3 39655697 39657055 -187867523 - L1MB7 LINE L1 -149 6035 4658 1972 154 58 3 chr3 39657171 39657514 -187867064 - MER57A LTR ERV1 -41 362 1 729 275 81 14 chr3 39657585 39657974 -187866604 - MLT1J LTR MaLR -52 459 1 374 300 121 9 chr3 39657977 39658321 -187866257 + HAL1 LINE L1 1483 1946 -561 2263 120 0 13 chr3 39658535 39658851 -187865727 - AluSx SINE Alu 0 312 1 957 142 8 0 chr3 39658851 39658985 -187865593 - AluJo SINE Alu -177 135 1 704 191 0 60 chr3 39658987 39659155 -187865423 - L1MC4 LINE L1 -407 7635 7478 421 210 0 0 chr3 39659157 39659238 -187865340 + AluJ/FLAM SINE Alu 2 82 -230 901 173 33 107 chr3 39659337 39659609 -187864969 - AluJo SINE Alu -18 294 43 2371 89 25 30 chr3 39660107 39660130 -187864448 + L1PA16 LINE L1 5808 5830 -336 2344 101 0 0 chr3 39660130 39660427 -187864151 + AluSc SINE Alu 1 297 -12 2371 89 25 30 chr3 39660427 39660764 -187863814 + L1PA16 LINE L1 5830 6166 0 355 172 31 0 chr3 39661125 39661201 -187863377 + AluSp SINE Alu 147 211 -92 792 222 59 37 chr3 39661324 39661594 -187862984 + L1ME1 LINE L1 5876 6151 -15 2179 117 0 3 chr3 39661594 39661892 -187862686 - AluSx SINE Alu -15 297 1 1786 182 3 3 chr3 39662197 39662493 -187862085 + AluJo SINE Alu 1 296 -16 271 264 55 36 chr3 39662574 39662684 -187861894 + HAL1b LINE L1 1203 1314 -34 264 349 75 7 chr3 39662859 39663005 -187861573 + MIR3 SINE MIR 21 176 -32 303 164 18 0 chr3 39664238 39664293 -187860285 + L1ME3A LINE L1 5879 5934 -236 878 136 0 0 chr3 39665078 39665210 -187859368 - FLAM_C SINE Alu -1 132 1 2251 254 22 7 chr3 39666020 39666576 -187858002 - L1ME3A LINE L1 -10 6160 5597 732 188 158 6 chr3 39666722 39666887 -187857691 + MER58A DNA MER1_type 32 221 -3 802 73 18 9 chr3 39667198 39667307 -187857271 + AluY SINE Alu 184 293 -18 329 229 57 9 chr3 39668794 39668899 -187855679 + MIR3 SINE MIR 84 193 -15 206 323 77 19 chr3 39669345 39669500 -187855078 - MIR SINE MIR -97 165 2 1846 134 8 4 chr3 39669640 39669908 -187854670 + AluJb SINE Alu 26 294 -18 424 193 67 44 chr3 39669961 39670096 -187854482 - MIR SINE MIR -42 220 83 231 268 120 42 chr3 39670110 39670252 -187854326 + L3 LINE CR1 1321 1473 -104 829 216 35 30 chr3 39671189 39671388 -187853190 + MER3 DNA MER1_type 2 201 -8 229 204 20 0 chr3 39671396 39671445 -187853133 + MER91 DNA MER1_type 141 190 0 2323 107 0 7 chr3 39672522 39672831 -187851747 + AluSc SINE Alu 1 307 -2 373 203 47 62 chr3 39672875 39673003 -187851575 + L1MC5 LINE L1 7770 7895 -66 1377 147 14 0 chr3 39673573 39673784 -187850794 - AluSx SINE Alu -13 297 84 1152 144 0 28 chr3 39673890 39674071 -187850507 + AluJo SINE Alu 1 176 -136 535 141 0 0 chr3 39674071 39674149 -187850429 - AluSx SINE Alu -233 79 2 892 229 77 72 chr3 39674687 39675062 -187849516 + MSTD LTR MaLR 17 393 -3 373 167 125 83 chr3 39675062 39675177 -187849401 + MLT1J LTR MaLR 338 461 -50 1384 137 40 0 chr3 39675177 39675404 -187849174 + MER46A DNA MER2_type 1 236 0 373 167 125 83 chr3 39675404 39675425 -187849153 + MLT1J LTR MaLR 461 480 -31 1855 157 4 0 chr3 39675626 39675933 -187848645 + AluJb SINE Alu 1 308 0 231 324 14 0 chr3 39676180 39676251 -187848327 + L2 LINE L2 3242 3313 0 328 307 66 6 chr3 39676449 39676615 -187847963 - L1MC4 LINE L1 -241 7801 7626 316 128 0 0 chr3 39676616 39676663 -187847915 - Alu SINE Alu -7 295 249 229 224 15 45 chr3 39676769 39676836 -187847742 + MIR SINE MIR 120 184 -78 769 273 123 46 chr3 39676900 39677314 -187847264 + MLT1J1 LTR MaLR 1 446 0 259 163 38 62 chr3 39677337 39677417 -187847161 + U13 snRNA snRNA 1 78 -26 2420 98 0 0 chr3 39677695 39677992 -187846586 - AluSg SINE Alu -13 297 1 385 246 41 35 chr3 39678475 39678646 -187845932 - L1MC4a LINE L1 -1797 6011 5840 201 270 5 92 chr3 39678715 39678911 -187845667 + CT-rich Low_complexity Low_complexity 1 179 0 * 307 408 0 0 chr3 39678768 39678915 -187845663 + C-rich Low_complexity Low_complexity 1 147 0 2290 107 10 3 chr3 39679309 39679608 -187844970 - AluSx SINE Alu -11 301 1 349 217 101 0 chr3 39680006 39680075 -187844503 - MER58A DNA MER1_type -30 77 2 720 168 99 0 chr3 39680187 39680318 -187844260 - MER21B LTR ERV1 -399 464 321 522 225 33 17 chr3 39680692 39680812 -187843766 + MER69A DNA AcHobo 14 135 -42 227 237 118 0 chr3 39680833 39680925 -187843653 + MIR SINE MIR 28 140 -68 201 283 0 0 chr3 39681460 39681506 -187843072 - L2 LINE L2 -3 3310 3265 278 303 108 10 chr3 39681515 39681710 -187842868 - L2 LINE L2 -211 3061 2848 196 227 0 0 chr3 39681746 39681790 -187842788 - MIR SINE MIR -7 255 212 553 231 56 7 chr3 39682178 39682321 -187842257 + MLT1H LTR MaLR 35 184 -365 979 266 44 49 chr3 39682445 39682993 -187841585 - L1ME3 LINE L1 -334 5828 5284 25 83 0 0 chr3 39683025 39683085 -187841493 + AT_rich Low_complexity Low_complexity 1 60 0 1956 143 117 8 chr3 39683172 39683557 -187841021 - L1MB8 LINE L1 0 6178 5752 275 193 125 11 chr3 39683811 39683899 -187840679 + MER5A DNA MER1_type 15 112 -77 296 305 39 26 chr3 39683968 39684122 -187840456 - MER5B DNA MER1_type -6 172 17 204 125 0 0 chr3 39686061 39686093 -187838485 + (TG)n Simple_repeat Simple_repeat 2 33 0 227 204 20 0 chr3 39686093 39686142 -187838436 + GA-rich Low_complexity Low_complexity 2 51 0 2225 124 0 9 chr3 39686230 39686583 -187837995 - AluSx SINE Alu 0 350 1 247 269 76 8 chr3 39686821 39686940 -187837638 - L1ME4a LINE L1 -178 5943 5817 2296 108 13 0 chr3 39687915 39688222 -187836356 + AluSx SINE Alu 1 311 -1 2339 156 31 11 chr3 39688263 39688736 -187835842 + L1M3 LINE L1 5200 5679 -504 21 0 0 0 chr3 39689051 39689072 -187835506 + AT_rich Low_complexity Low_complexity 1 21 0 215 256 106 16 chr3 39689437 39689567 -187835011 + MIR3 SINE MIR 15 150 -61 976 269 63 36 chr3 39691145 39691509 -187833069 + LTR33 LTR ERVL 23 396 -125 181 221 265 0 chr3 39691628 39691696 -187832882 + MIR SINE MIR 176 261 -1 1331 272 116 15 chr3 39691781 39692240 -187832338 + MLT1J LTR MaLR 3 507 -4 438 276 79 47 chr3 39692374 39692628 -187831950 + MLT1J LTR MaLR 1 262 -249 323 320 49 16 chr3 39692941 39693063 -187831515 + MLT1K LTR MaLR 24 149 -439 370 264 41 102 chr3 39693178 39693439 -187831139 + MLT1K LTR MaLR 322 545 -43 2222 121 3 10 chr3 39693710 39694024 -187830554 + AluSx SINE Alu 1 312 0 373 233 40 0 chr3 39694386 39694496 -187830082 + MIR SINE MIR 43 160 -66 1767 174 3 7 chr3 39694677 39694975 -187829603 + AluJo SINE Alu 1 297 -15 245 157 20 39 chr3 39695903 39695954 -187828624 - L1ME4a LINE L1 -104 6017 5968 24 85 0 0 chr3 39695972 39696031 -187828547 + AT_rich Low_complexity Low_complexity 1 59 0 780 209 45 6 chr3 39696684 39696861 -187827717 + MER5A DNA MER1_type 4 187 -2 248 204 0 0 chr3 39697157 39697201 -187827377 - L2 LINE L2 -40 3273 3230 4196 163 101 16 chr3 39697238 39698220 -187826358 + L1MB7 LINE L1 5122 6184 0 2152 112 0 37 chr3 39698410 39698732 -187825846 - AluSx SINE Alu -2 310 1 326 71 0 0 chr3 39698732 39698774 -187825804 - Alu SINE Alu -260 42 1 493 182 91 0 chr3 39699095 39699194 -187825384 + L1MA8 LINE L1 5971 6078 -213 437 239 28 102 chr3 39699887 39700063 -187824515 + MIR SINE MIR 79 241 -21 298 282 105 16 chr3 39700096 39700220 -187824358 + L2 LINE L2 3134 3268 -4 1769 162 54 0 chr3 39700728 39701043 -187823535 + MLT1B LTR MaLR 57 388 -2 801 187 47 6 chr3 39702531 39702702 -187821876 + MER5B DNA MER1_type 1 178 0 982 169 0 0 chr3 39703227 39703416 -187821162 - AluJb SINE Alu 0 323 135 358 357 26 7 chr3 39703622 39703776 -187820802 - L2 LINE L2 0 3272 3116 282 264 55 27 chr3 39704086 39704196 -187820382 + MLT1H LTR MaLR 437 549 0 1755 141 28 17 chr3 39704529 39704819 -187819759 - AluJo SINE Alu -19 293 1 2228 86 0 7 chr3 39705098 39705378 -187819200 + AluSc SINE Alu 1 278 -31 213 39 0 0 chr3 39705381 39705407 -187819171 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 643 157 0 26 chr3 39705610 39705763 -187818815 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 278 250 31 0 chr3 39705846 39705910 -187818668 + MIR3 SINE MIR 120 185 -23 830 242 171 10 chr3 39705921 39706214 -187818364 - MER113 DNA MER1_type? 0 521 182 1643 197 10 0 chr3 39706257 39706561 -187818017 + AluJo SINE Alu 1 307 -5 205 250 73 0 chr3 39706803 39706871 -187817707 - MIR SINE MIR -115 93 21 412 284 45 27 chr3 39707008 39707206 -187817372 - MIR SINE MIR -60 202 3 402 260 47 16 chr3 39707222 39707349 -187817229 - L2 LINE L2 -2 3311 3181 2104 119 0 0 chr3 39707391 39707677 -187816901 + AluSg SINE Alu 2 287 -23 304 275 0 22 chr3 39707677 39707768 -187816810 + L1MC4 LINE L1 6615 6703 -1339 * 318 264 23 0 chr3 39707756 39707843 -187816735 + L1MC4 LINE L1 6614 6702 -1340 459 196 0 0 chr3 39707846 39708019 -187816559 + (TA)n Simple_repeat Simple_repeat 1 173 0 303 288 29 35 chr3 39708183 39708353 -187816225 + GA-rich Low_complexity Low_complexity 5 173 0 220 338 0 0 chr3 39708356 39708433 -187816145 - MIR SINE MIR -6 256 180 2624 153 75 42 chr3 39708646 39709111 -187815467 + LTR24B LTR ERV1 3 491 -85 2140 98 18 0 chr3 39709111 39709416 -187815162 - AluSc SINE Alu 0 310 1 2624 153 75 42 chr3 39709416 39709498 -187815080 + LTR24B LTR ERV1 491 569 -7 366 176 15 0 chr3 39709740 39709808 -187814770 - L1ME4a LINE L1 -81 6040 5972 288 267 122 8 chr3 39710039 39710129 -187814449 + L1ME4a LINE L1 5849 5960 -161 4443 137 5 37 chr3 39710129 39710883 -187813695 + L1MB2 LINE L1 5442 6171 0 288 267 122 8 chr3 39710883 39710923 -187813655 + L1ME4a LINE L1 5960 5994 -127 452 206 178 20 chr3 39710959 39711105 -187813473 + MER5A DNA MER1_type 12 180 -9 201 195 0 0 chr3 39711104 39711145 -187813433 + L2 LINE L2 3273 3313 0 * 456 266 101 19 chr3 39712176 39712385 -187812193 + L1MC4a LINE L1 5683 5858 -305 376 248 95 7 chr3 39712496 39712633 -187811945 + MIR SINE MIR 65 213 -49 440 292 0 0 chr3 39712876 39712996 -187811582 - MER117 DNA MER1_type -73 124 5 235 284 165 0 chr3 39713062 39713171 -187811407 + MER94 DNA DNA 4 130 -4 2419 70 3 16 chr3 39713371 39713684 -187810894 + AluSc SINE Alu 1 309 0 5959 77 38 30 chr3 39714004 39714824 -187809754 + LTR12 LTR ERV1 1 826 0 3855 131 23 10 chr3 39715248 39715853 -187808725 - MER41B LTR ERV1 -22 613 1 2196 101 17 0 chr3 39715936 39716232 -187808346 + AluSq SINE Alu 1 301 -12 3807 118 31 54 chr3 39716412 39716578 -187808000 + MER41B LTR ERV1 1 169 -466 2604 58 0 10 chr3 39716578 39716887 -187807691 + AluY SINE Alu 1 306 -5 3807 118 31 54 chr3 39716887 39717267 -187807311 + MER41B LTR ERV1 169 532 -103 1509 164 95 0 chr3 39717267 39717541 -187807037 + AluJb SINE Alu 1 300 -12 3807 118 31 54 chr3 39717541 39717643 -187806935 + MER41B LTR ERV1 532 635 0 524 194 104 0 chr3 39717662 39717796 -187806782 + MIR SINE MIR 59 206 -56 650 238 68 0 chr3 39718297 39718444 -187806134 - FRAM SINE Alu -9 157 1 601 143 61 0 chr3 39718567 39718665 -187805913 - HY1 scRNA scRNA -3 109 6 2321 92 7 3 chr3 39719778 39720083 -187804495 - AluSp SINE Alu -7 306 1 55 16 0 0 chr3 39720119 39720181 -187804397 + AT_rich Low_complexity Low_complexity 1 62 0 2264 78 10 86 chr3 39720435 39720818 -187803760 - L1PA16 LINE L1 -9 6157 5804 3956 104 116 34 chr3 39720903 39721992 -187802586 + MER11A LTR ERVK 1 1232 -4 211 407 34 0 chr3 39722029 39722147 -187802431 - L2 LINE L2 -188 3084 2963 1676 238 51 16 chr3 39722147 39722579 -187801999 - MLT1G LTR MaLR 0 590 144 2145 128 6 6 chr3 39722583 39722895 -187801683 + AluSx SINE Alu 1 312 0 228 131 0 131 chr3 39722959 39723020 -187801558 - MLT1G LTR MaLR -415 134 82 1815 165 0 3 chr3 39723698 39723989 -187800589 - AluJo SINE Alu -22 290 1 566 185 0 0 chr3 39724033 39724125 -187800453 - AluSc SINE Alu -95 214 123 2189 115 0 0 chr3 39724130 39724418 -187800160 - AluSx SINE Alu -24 288 1 397 146 31 73 chr3 39724419 39724515 -187800063 - L1M4 LINE L1 -506 5668 5577 251 268 202 35 chr3 39724557 39724698 -187799880 - L1M4 LINE L1 -2347 3799 3636 2232 104 0 13 chr3 39724870 39725168 -187799410 - AluSg SINE Alu -16 294 1 186 118 0 0 chr3 39725180 39725214 -187799364 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2107 120 0 10 chr3 39725214 39725496 -187799082 - AluSg SINE Alu -25 285 5 1118 228 20 63 chr3 39725692 39725921 -187798657 - L1MB8 LINE L1 -10 6168 5958 1890 161 17 3 chr3 39725921 39726219 -187798359 + AluSx SINE Alu 1 302 -10 1118 228 20 63 chr3 39726219 39726340 -187798238 - L1MB8 LINE L1 -220 5958 5833 359 329 27 13 chr3 39726391 39726540 -187798038 - L1MEc LINE L1 -5908 488 338 831 136 0 8 chr3 39727050 39727175 -187797403 - FLAM_C SINE Alu -9 124 1 1145 121 6 12 chr3 39727693 39727866 -187796712 - FRAM SINE Alu -4 172 1 1676 181 3 3 chr3 39728195 39728483 -187796095 + AluJo SINE Alu 1 288 -24 1423 145 16 8 chr3 39728512 39728754 -187795824 + L1MB3 LINE L1 5925 6168 -15 2137 141 0 0 chr3 39728957 39729262 -187795316 - AluSq SINE Alu -8 305 1 1837 156 0 26 chr3 39730083 39730282 -187794296 - AluJo SINE Alu -12 300 110 1941 156 24 19 chr3 39730282 39730653 -187793925 + THE1C LTR MaLR 1 373 -2 1837 156 0 26 chr3 39730653 39730761 -187793817 - AluJo SINE Alu -202 110 1 225 216 0 0 chr3 39731096 39731147 -187793431 - L2 LINE L2 0 3313 3263 2021 126 30 7 chr3 39732082 39732106 -187792472 - AluSx SINE Alu -3 309 287 186 43 0 0 chr3 39732106 39732129 -187792449 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2021 126 30 7 chr3 39732129 39732406 -187792172 - AluSx SINE Alu -25 287 1 801 186 0 0 chr3 39732421 39732539 -187792039 - FLAM_C SINE Alu -25 118 1 1205 202 6 10 chr3 39733099 39733411 -187791167 + AluY SINE Alu 1 311 0 5959 77 38 30 chr3 39733733 39734553 -187790025 + LTR12 LTR ERV1 1 826 0 844 232 35 89 chr3 39734859 39735033 -187789545 + MLT1H LTR MaLR 200 345 -204 1888 170 13 3 chr3 39735033 39735333 -187789245 + AluJb SINE Alu 1 303 -9 844 232 35 89 chr3 39735333 39735528 -187789050 + MLT1H LTR MaLR 345 549 0 316 329 91 57 chr3 39735678 39736085 -187788493 + L3 LINE CR1 1133 1553 -24 305 267 155 25 chr3 39736211 39736372 -187788206 + MIR SINE MIR 23 204 -58 1918 147 0 10 chr3 39736543 39736835 -187787743 - AluJo SINE Alu -23 289 1 724 189 8 23 chr3 39736860 39736992 -187787586 - FLAM_C SINE Alu -3 130 1 203 157 0 59 chr3 39737528 39737579 -187786999 + CT-rich Low_complexity Low_complexity 5 52 0 243 321 179 13 chr3 39737643 39737867 -187786711 - MIR SINE MIR 0 262 2 1987 158 3 0 chr3 39738022 39738332 -187786246 + AluSx SINE Alu 1 311 -1 190 261 0 0 chr3 39738918 39738964 -187785614 - MER5A DNA MER1_type -141 48 3 2480 80 0 3 chr3 39738970 39739282 -187785296 + AluY SINE Alu 1 311 0 2416 86 0 0 chr3 39740039 39740342 -187784236 + AluY SINE Alu 1 303 -8 1831 144 39 20 chr3 39740645 39740950 -187783628 - AluY SINE Alu 0 311 1 779 117 117 0 chr3 39740950 39741070 -187783508 - AluJb SINE Alu -177 135 2 724 133 0 62 chr3 39741124 39741252 -187783326 + AluSg/x SINE Alu 129 248 -64 25 31 0 0 chr3 39742597 39742629 -187781949 + GC_rich Low_complexity Low_complexity 1 32 0 1781 156 6 22 chr3 39743194 39743508 -187781070 + AluJb SINE Alu 1 309 -3 199 139 70 0 chr3 39743684 39743727 -187780851 - L2 LINE L2 -18 3254 3209 586 177 40 0 chr3 39743753 39743877 -187780701 + MER5B DNA MER1_type 1 129 -49 254 79 53 0 chr3 39743892 39743930 -187780648 - Alu SINE Alu -14 286 247 204 196 18 18 chr3 39743930 39743986 -187780592 + MER5B DNA MER1_type 120 175 -3 1897 119 50 4 chr3 39744056 39744333 -187780245 + AluSq SINE Alu 1 290 -23 2066 144 63 47 chr3 39744667 39744837 -187779741 - LTR39 LTR ERV1 0 783 617 1571 164 89 7 chr3 39744837 39745117 -187779461 + AluJo SINE Alu 1 303 -9 2066 144 63 47 chr3 39745117 39745329 -187779249 - LTR39 LTR ERV1 -166 617 395 1330 181 0 9 chr3 39745329 39745556 -187779022 + AluJb SINE Alu 86 310 -2 2318 128 63 16 chr3 39745556 39745776 -187778802 - LTR39 LTR ERV1 -376 407 160 2056 134 23 0 chr3 39745776 39746081 -187778497 - AluJb SINE Alu 0 312 1 2318 128 63 16 chr3 39746081 39746242 -187778336 - LTR39 LTR ERV1 -623 160 8 827 178 0 0 chr3 39746327 39746456 -187778122 - FLAM_C SINE Alu -14 129 1 1969 89 203 12 chr3 39746596 39747009 -187777569 - LTR14B LTR ERVK 0 608 1 342 256 16 8 chr3 39747135 39747256 -187777322 + L1ME3A LINE L1 5835 5956 -214 1194 78 176 54 chr3 39747661 39747866 -187776712 + MER30 DNA MER1_type 1 230 0 336 285 72 47 chr3 39747960 39748153 -187776425 - MLT1G1-int LTR MaLR -882 489 292 276 294 71 0 chr3 39748195 39748280 -187776298 - MLT1G1-int LTR MaLR -1280 91 1 776 243 81 103 chr3 39748299 39748763 -187775815 - MLT1G1 LTR MaLR 0 530 3 203 258 86 32 chr3 39748776 39748869 -187775709 - MIR SINE MIR -108 154 57 833 308 35 90 chr3 39748899 39748982 -187775596 - L2 LINE L2 -1 3271 3185 1596 149 28 25 chr3 39748982 39749264 -187775314 + AluSx SINE Alu 1 283 -29 833 308 35 90 chr3 39749264 39750214 -187774364 - L2 LINE L2 -87 3185 2274 325 127 73 0 chr3 39750265 39750320 -187774258 + L2 LINE L2 3250 3308 -5 744 145 23 30 chr3 39750521 39750652 -187773926 + FLAM_C SINE Alu 1 130 -3 2257 62 55 0 chr3 39750678 39750967 -187773611 - AluY SINE Alu -6 305 1 675 301 6 0 chr3 39751012 39751188 -187773390 + MER91B DNA MER1_type 14 190 0 1345 150 109 92 chr3 39751312 39751377 -187773201 - MLT1A1 LTR MaLR 0 365 303 1983 154 7 0 chr3 39751377 39751682 -187772896 - AluSx SINE Alu -5 307 1 1345 150 109 92 chr3 39751682 39751845 -187772733 - MLT1A1 LTR MaLR -62 303 126 1526 190 38 10 chr3 39751845 39752134 -187772444 + AluJo SINE Alu 1 297 -15 1345 150 109 92 chr3 39752134 39752263 -187772315 - MLT1A1 LTR MaLR -239 126 1 801 186 0 0 chr3 39752729 39752847 -187771731 + FLAM_C SINE Alu 1 118 -25 2021 126 30 7 chr3 39752862 39753139 -187771439 + AluSx SINE Alu 1 287 -25 186 43 0 0 chr3 39753139 39753162 -187771416 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2021 126 30 7 chr3 39753162 39753186 -187771392 + AluSx SINE Alu 287 309 -3 225 216 0 0 chr3 39754120 39754171 -187770407 + L2 LINE L2 3263 3313 0 1837 156 0 26 chr3 39754506 39754614 -187769964 + AluJo SINE Alu 1 110 -202 1941 156 24 19 chr3 39754614 39754985 -187769593 - THE1C LTR MaLR -2 373 1 1837 156 0 26 chr3 39754985 39755184 -187769394 + AluJo SINE Alu 110 300 -12 1964 151 0 0 chr3 39756006 39756352 -187768226 + AluSq SINE Alu 1 346 0 525 255 28 0 chr3 39756353 39756498 -187768080 - L1M4 LINE L1 -843 5303 5155 1685 183 0 29 chr3 39756499 39756805 -187767773 - AluJo SINE Alu -15 297 1 1937 169 36 22 chr3 39756858 39757220 -187767358 + MLT1D LTR MaLR 139 505 0 462 240 8 8 chr3 39757228 39757349 -187767229 - L1M4 LINE L1 -1260 4886 4766 2111 109 46 0 chr3 39757356 39757641 -187766937 - AluSx SINE Alu -13 299 2 1216 251 49 2 chr3 39757807 39758218 -187766360 + L1MC/D LINE L1 4181 4610 -1536 641 167 0 0 chr3 39758258 39758354 -187766224 - AluS SINE Alu -215 97 2 420 254 48 39 chr3 39758884 39759068 -187765510 + L1MC/D LINE L1 5553 5737 -532 528 237 164 0 chr3 39759349 39759526 -187765052 + MIR SINE MIR 17 222 -40 1702 182 0 3 chr3 39759534 39759831 -187764747 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr3 39760687 39760714 -187763864 + AT_rich Low_complexity Low_complexity 1 27 0 1621 134 49 65 chr3 39761061 39761213 -187763365 - MER50 LTR ERV1 0 734 588 730 33 0 0 chr3 39761213 39761303 -187763275 + L1PA4 LINE L1 6063 6152 -3 1621 134 49 65 chr3 39761303 39761457 -187763121 - MER50 LTR ERV1 -146 588 433 1041 143 30 0 chr3 39761459 39761627 -187762951 - MER50 LTR ERV1 -500 234 62 558 0 0 0 chr3 39761627 39761689 -187762889 + (TG)n Simple_repeat Simple_repeat 2 63 0 288 65 109 22 chr3 39761742 39761788 -187762790 - MSTC LTR MaLR -372 56 7 206 162 27 0 chr3 39762047 39762084 -187762494 + (TATG)n Simple_repeat Simple_repeat 2 39 0 227 328 62 8 chr3 39762143 39762271 -187762307 - L2 LINE L2 -809 2505 2371 691 199 115 0 chr3 39762825 39762981 -187761597 + FAM SINE Alu 2 175 0 2092 62 0 0 chr3 39763329 39763587 -187760991 + L1PA7 LINE L1 5897 6154 0 1550 183 32 11 chr3 39764185 39764469 -187760109 + AluJo SINE Alu 1 290 -22 814 73 15 0 chr3 39764469 39764605 -187759973 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 5659 214 61 37 chr3 39764761 39765843 -187758735 + L1MB8 LINE L1 3249 4304 -1842 2097 101 59 0 chr3 39765843 39766130 -187758448 + AluSq SINE Alu 1 304 -9 5659 214 61 37 chr3 39766130 39766563 -187758015 + L1MB8 LINE L1 4304 4808 -1338 1157 182 81 69 chr3 39766563 39766898 -187757680 + MER44D DNA MER2_type 1 609 0 5659 214 61 37 chr3 39766898 39767006 -187757572 + L1MB8 LINE L1 4808 4912 -1234 4494 156 38 19 chr3 39767006 39767111 -187757467 + LTR39 LTR ERV1 1 103 -680 2573 121 3 0 chr3 39767111 39767474 -187757104 - THE1B LTR MaLR 0 364 1 4494 156 38 19 chr3 39767474 39767829 -187756749 + LTR39 LTR ERV1 103 483 -300 1747 158 39 3 chr3 39767829 39768113 -187756465 - AluJb SINE Alu -18 294 1 4494 156 38 19 chr3 39768113 39768420 -187756158 + LTR39 LTR ERV1 483 783 0 270 86 0 0 chr3 39768420 39768455 -187756123 + L1MB8 LINE L1 4909 4943 -1203 1416 186 93 21 chr3 39768461 39768614 -187755964 + L1MB8 LINE L1 5124 5265 -913 1816 164 3 19 chr3 39768614 39768925 -187755653 - AluJo SINE Alu -6 306 1 1416 186 93 21 chr3 39768925 39769281 -187755297 + L1MB8 LINE L1 5265 5677 -501 379 301 80 40 chr3 39769283 39769383 -187755195 + MER92C LTR ERV1 6 117 -437 2028 166 10 42 chr3 39769383 39769786 -187754792 + MLT1B LTR MaLR 1 390 0 379 301 80 40 chr3 39769786 39769861 -187754717 + MER92C LTR ERV1 117 188 -366 346 254 0 0 chr3 39769924 39769995 -187754583 + MER92C LTR ERV1 484 554 0 1827 194 96 15 chr3 39769996 39770465 -187754113 + L1MB8 LINE L1 5671 6177 -1 290 298 0 54 chr3 39771589 39771757 -187752821 + T-rich Low_complexity Low_complexity 2 160 0 936 177 0 19 chr3 39771897 39772055 -187752523 - FRAM SINE Alu -9 157 3 2328 78 3 0 chr3 39772422 39772750 -187751828 - AluSq SINE Alu 0 329 1 520 328 39 11 chr3 39772807 39772987 -187751591 - MIR3 SINE MIR -6 202 18 261 223 160 32 chr3 39773105 39773199 -187751379 + MIR SINE MIR 53 158 -104 398 292 36 6 chr3 39773328 39773496 -187751082 + MIR SINE MIR 78 250 -12 44094 49 2 2 chr3 39774010 39780163 -187744415 - L1PA4 LINE L1 -1 6154 1 1176 210 69 57 chr3 39780236 39780691 -187743887 - MLT1B LTR MaLR 0 390 2 377 303 28 0 chr3 39780792 39780901 -187743677 - MIR3 SINE MIR -7 201 90 409 238 112 42 chr3 39781081 39781224 -187743354 - MIR SINE MIR -47 215 63 1410 160 0 95 chr3 39781827 39782133 -187742445 - AluJb SINE Alu 0 312 36 1911 116 78 0 chr3 39782164 39782448 -187742130 + AluSq SINE Alu 1 306 -7 1471 223 67 85 chr3 39782494 39782612 -187741966 + MLT1D LTR MaLR 2 121 -384 2343 81 10 0 chr3 39782612 39782909 -187741669 + AluSq SINE Alu 1 300 -13 1471 223 67 85 chr3 39782909 39783296 -187741282 + MLT1D LTR MaLR 121 498 -7 847 182 0 0 chr3 39783548 39783691 -187740887 + FLAM_C SINE Alu 1 143 0 327 291 45 2 chr3 39783696 39783877 -187740701 + L1ME2 LINE L1 4643 4832 -1314 2295 107 0 3 chr3 39784374 39784682 -187739896 + AluSx SINE Alu 5 311 -1 2056 112 10 3 chr3 39784730 39785034 -187739544 + AluY SINE Alu 1 306 -5 280 276 74 80 chr3 39785074 39785375 -187739203 + L1ME2 LINE L1 5567 5867 -297 1468 67 0 0 chr3 39785375 39785554 -187739024 + L1PA8 LINE L1 5992 6170 -2 280 276 74 80 chr3 39785554 39785578 -187739000 + L1ME2 LINE L1 5867 5890 -274 229 186 47 0 chr3 39785925 39785968 -187738610 + L2 LINE L2 3223 3267 -5 24 53 0 0 chr3 39786462 39786500 -187738078 + AT_rich Low_complexity Low_complexity 1 38 0 360 217 22 11 chr3 39786725 39786817 -187737761 + LTR33 LTR ERVL 1 93 -428 187 313 38 0 chr3 39786843 39786923 -187737655 + MER5B DNA MER1_type 9 91 -87 273 322 128 29 chr3 39787475 39787717 -187736861 + L2 LINE L2 2890 3155 -117 2698 198 65 24 chr3 39787744 39788380 -187736198 + LTR65 LTR ERV1 8 669 0 219 186 0 0 chr3 39788433 39788476 -187736102 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 446 256 60 0 chr3 39788554 39788671 -187735907 + MIR SINE MIR 28 151 -111 283 57 0 0 chr3 39788877 39788912 -187735666 - U2 snRNA snRNA -153 35 1 710 216 54 4 chr3 39788949 39789173 -187735405 + LTR37A LTR ERV1 111 426 0 263 261 254 23 chr3 39790133 39790263 -187734315 - MIR SINE MIR -71 191 32 2182 113 7 3 chr3 39790956 39791257 -187733321 + AluSp SINE Alu 1 302 -11 273 278 56 0 chr3 39792455 39792527 -187732051 - MIR SINE MIR -70 192 117 1669 156 19 35 chr3 39792530 39792844 -187731734 + AluJo SINE Alu 1 309 -3 2054 103 24 21 chr3 39793063 39793354 -187731224 + AluSc SINE Alu 3 294 -15 23 33 0 0 chr3 39793795 39793825 -187730753 + AT_rich Low_complexity Low_complexity 1 30 0 318 309 53 0 chr3 39794549 39794643 -187729935 + MIR3 SINE MIR 58 156 -52 4580 65 36 3 chr3 39794811 39795811 -187728767 + MER11A LTR ERVK 1 1266 0 378 0 0 0 chr3 39796080 39796122 -187728456 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 3442 217 45 52 chr3 39796213 39796907 -187727671 - L1ME1 LINE L1 -9 6157 5459 348 24 0 0 chr3 39796907 39796948 -187727630 + (TG)n Simple_repeat Simple_repeat 2 42 0 3442 217 45 52 chr3 39796948 39797114 -187727464 - L1ME1 LINE L1 -707 5459 5301 2260 72 11 0 chr3 39797114 39797455 -187727123 + AluSp SINE Alu 3 346 0 3442 217 45 52 chr3 39797455 39797601 -187726977 - L1ME1 LINE L1 -865 5301 5155 1673 183 0 29 chr3 39797602 39797908 -187726670 - AluJo SINE Alu -15 297 1 1964 169 36 17 chr3 39797961 39798321 -187726257 + MLT1D LTR MaLR 139 505 0 470 240 8 8 chr3 39798329 39798450 -187726128 - L1ME1 LINE L1 -1260 4886 4766 2091 109 46 0 chr3 39798457 39798742 -187725836 - AluSx SINE Alu -13 299 2 1259 251 49 2 chr3 39798908 39799319 -187725259 + L1M4 LINE L1 4181 4610 -1536 682 167 0 0 chr3 39799359 39799455 -187725123 - AluS SINE Alu -215 97 2 2231 96 28 0 chr3 39800580 39800871 -187723707 + AluSx SINE Alu 1 299 -13 2260 94 13 7 chr3 39801142 39801450 -187723128 - AluSx SINE Alu -2 310 1 188 45 0 0 chr3 39801596 39801618 -187722960 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 460 289 11 68 chr3 39851750 39851798 -187672780 - L1MC5 LINE L1 -82 7879 7830 2517 63 0 3 chr3 39851798 39852099 -187672479 - AluY SINE Alu -11 300 1 460 289 11 68 chr3 39852099 39852240 -187672338 - L1MC5 LINE L1 -131 7830 7701 22 23 0 45 chr3 39852244 39852269 -187672309 + AT_rich Low_complexity Low_complexity 1 26 -16 357 82 0 0 chr3 39852269 39852318 -187672260 + (TA)n Simple_repeat Simple_repeat 1 49 0 2478 94 0 0 chr3 39852318 39852627 -187671951 - AluSq SINE Alu -4 309 1 22 23 0 45 chr3 39852627 39852644 -187671934 + AT_rich Low_complexity Low_complexity 24 42 0 599 250 128 30 chr3 39852804 39853169 -187671409 - Tigger8 DNA MER2_type -143 523 46 2545 167 49 18 chr3 39853384 39853893 -187670685 + L1MB7 LINE L1 5652 6176 -8 738 240 54 50 chr3 39854793 39854850 -187669728 + MER58A DNA MER1_type 1 56 -2364 1847 158 3 14 chr3 39854850 39855147 -187669431 - AluJb SINE Alu -17 295 2 738 240 54 50 chr3 39855147 39855310 -187669268 + MER58A DNA MER1_type 56 222 -2 1796 212 147 11 chr3 39857932 39858409 -187666169 - MER34 LTR ERV1 0 542 1 2283 101 10 0 chr3 39859755 39860052 -187664526 - AluSx SINE Alu -2 310 11 7147 165 49 115 chr3 39861158 39861176 -187663402 + L1MB2 LINE L1 3176 3194 -2977 1374 160 33 118 chr3 39861176 39861345 -187663233 + AluJb SINE Alu 1 130 -182 1934 137 27 10 chr3 39861345 39861644 -187662934 + AluSx SINE Alu 6 309 -3 1374 160 33 118 chr3 39861644 39861806 -187662772 + AluJb SINE Alu 130 304 -8 7147 165 49 115 chr3 39861806 39862320 -187662258 + L1MB2 LINE L1 3194 3741 -2430 2057 129 24 0 chr3 39862320 39862607 -187661971 - AluSx SINE Alu -18 294 1 7147 165 49 115 chr3 39862607 39863604 -187660974 + L1MB2 LINE L1 3741 4803 -1368 721 176 64 0 chr3 39863604 39863729 -187660849 + FAM SINE Alu 33 165 -20 7147 165 49 115 chr3 39863729 39865266 -187659312 + L1MB2 LINE L1 4803 6144 -27 231 36 0 0 chr3 39865274 39865302 -187659276 + (CA)n Simple_repeat Simple_repeat 1 28 0 1606 172 89 3 chr3 39866271 39866574 -187658004 - MER58B DNA MER1_type 0 341 13 550 207 173 0 chr3 39866605 39866755 -187657823 + MER5A DNA MER1_type 14 189 0 1253 204 112 30 chr3 39866895 39867214 -187657364 + L1MC2 LINE L1 5935 6289 -55 2232 107 3 7 chr3 39867214 39867523 -187657055 - AluSx SINE Alu -4 308 1 1253 204 112 30 chr3 39867523 39867570 -187657008 + L1MC2 LINE L1 6289 6331 -13 1174 89 0 0 chr3 39867677 39867823 -187656755 + AluY SINE Alu 148 293 -18 281 247 65 17 chr3 39869632 39869783 -187654795 + MIR SINE MIR 37 192 -62 1824 159 92 52 chr3 39870049 39870452 -187654126 - MSTC LTR MaLR -7 421 3 512 206 35 28 chr3 39870863 39871004 -187653574 - MER5A DNA MER1_type -43 146 5 939 171 0 38 chr3 39871058 39871182 -187653396 + MER58B DNA MER1_type 190 308 -2112 2457 88 0 7 chr3 39871182 39871487 -187653091 - AluSc SINE Alu -6 303 1 939 171 0 38 chr3 39871487 39871520 -187653058 + MER58B DNA MER1_type 308 341 0 217 248 209 0 chr3 39871761 39871852 -187652726 - MIR SINE MIR -81 127 43 1550 207 149 41 chr3 39871906 39872393 -187652185 - MLT1F LTR MaLR 0 542 6 2515 71 0 0 chr3 39872887 39873195 -187651383 + AluY SINE Alu 1 308 -3 835 192 136 5 chr3 39873796 39873994 -187650584 - MER58A DNA MER1_type 0 224 1 264 367 28 0 chr3 39874018 39874127 -187650451 + L2 LINE L2 3136 3247 -25 276 196 18 0 chr3 39874706 39874762 -187649816 - MIR SINE MIR -111 151 95 2125 128 7 0 chr3 39874800 39875096 -187649482 + AluSx SINE Alu 1 298 -14 271 204 45 114 chr3 39875096 39875171 -187649407 + MIR SINE MIR 90 154 -108 2430 82 0 10 chr3 39875171 39875475 -187649103 + AluSx SINE Alu 1 301 -11 271 204 45 114 chr3 39875475 39875531 -187649047 + MIR SINE MIR 154 212 -50 439 168 173 6 chr3 39876040 39876225 -187648353 - MIR SINE MIR -37 225 3 238 315 71 55 chr3 39876316 39876443 -187648135 + MIR3 SINE MIR 11 139 -69 2133 120 0 16 chr3 39876900 39877208 -187647370 - AluSx SINE Alu -9 303 1 1567 168 15 4 chr3 39877829 39878103 -187646475 + AluJo SINE Alu 10 286 -26 1790 132 15 0 chr3 39878381 39878654 -187645924 + AluSx SINE Alu 1 277 -35 2150 103 0 10 chr3 39879273 39879585 -187644993 + AluSq SINE Alu 1 309 -4 964 118 0 22 chr3 39880484 39880620 -187643958 + FLAM_C SINE Alu 1 133 0 333 291 48 75 chr3 39880656 39881038 -187643540 - L2 LINE L2 -183 3089 2719 345 338 31 25 chr3 39881178 39881272 -187643306 + L2 LINE L2 3149 3246 -67 2057 149 0 0 chr3 39881272 39881581 -187642997 - AluSx SINE Alu -3 309 1 345 338 31 25 chr3 39881581 39881646 -187642932 + L2 LINE L2 3246 3309 -4 2036 123 0 0 chr3 39881671 39881982 -187642596 - AluSx SINE Alu 0 311 1 382 217 60 0 chr3 39882147 39882230 -187642348 - MIR SINE MIR -111 151 64 538 211 0 10 chr3 39882344 39882448 -187642130 - FLAM_C SINE Alu -40 103 1 1250 133 10 0 chr3 39882844 39883047 -187641531 - L1MA2 LINE L1 0 6304 6100 491 235 7 29 chr3 39883047 39883183 -187641395 + LTR37B LTR ERV1 3 135 -333 * 626 221 0 15 chr3 39883175 39883306 -187641272 - MER58B DNA MER1_type -9 332 204 3126 178 56 14 chr3 39883316 39883948 -187640630 - MER39 LTR ERV1 0 707 1 668 167 12 68 chr3 39883949 39884037 -187640541 - MER58B DNA MER1_type -147 194 118 2337 84 0 3 chr3 39884037 39884336 -187640242 + AluSp SINE Alu 1 298 -15 668 167 12 68 chr3 39884336 39884409 -187640169 - MER58B DNA MER1_type -223 118 42 402 222 96 89 chr3 39884456 39884726 -187639852 + LTR37B LTR ERV1 197 468 0 373 323 123 7 chr3 39885161 39885316 -187639262 + MIR3 SINE MIR 21 193 -15 1054 178 186 35 chr3 39885412 39885670 -187638908 + AluJo SINE Alu 1 297 -5 759 242 68 89 chr3 39887186 39887644 -187636934 - L1MC4 LINE L1 -5 8037 7590 267 267 13 13 chr3 39887703 39887778 -187636800 - L1MC4 LINE L1 -629 7413 7339 324 210 0 16 chr3 39888716 39888778 -187635800 + MER20 DNA MER1_type 1 61 -158 890 53 0 0 chr3 39888778 39888891 -187635687 - AluY SINE Alu -13 298 186 306 106 106 0 chr3 39888893 39888940 -187635638 + MER20 DNA MER1_type 54 105 -114 1231 216 183 49 chr3 39889563 39890011 -187634567 - MLT1H LTR MaLR 0 549 42 320 287 128 32 chr3 39890026 39890214 -187634364 - L1P5 LINE L1 -346 5808 5603 1039 83 0 0 chr3 39890474 39890606 -187633972 + AluSg SINE Alu 2 133 -177 1998 122 7 3 chr3 39890606 39890902 -187633676 + AluSq SINE Alu 1 297 -16 425 345 61 27 chr3 39890902 39891195 -187633383 - L2 LINE L2 -788 2526 2224 1133 143 22 0 chr3 39891237 39891419 -187633159 - MER5A DNA MER1_type 0 189 4 705 209 29 0 chr3 39892119 39892258 -187632320 + MIR SINE MIR 102 244 -18 2154 114 3 0 chr3 39892847 39893155 -187631423 - AluSx SINE Alu -3 309 1 561 202 151 1 chr3 39894492 39894655 -187629923 + L1ME3 LINE L1 5727 5912 -250 1606 207 30 3 chr3 39894662 39894962 -187629616 + MER58B DNA MER1_type 5 312 -29 392 148 171 11 chr3 39894959 39895047 -187629531 - MLT1D LTR MaLR -133 372 271 * 457 224 61 0 chr3 39895075 39895173 -187629405 - MLT1D LTR MaLR -330 175 72 2540 208 57 80 chr3 39895209 39895415 -187629163 - MER21B LTR ERV1 -60 803 594 1232 171 78 91 chr3 39895415 39895866 -187628712 - LTR56 LTR ERV1 0 445 1 2540 208 57 80 chr3 39895866 39896382 -187628196 - MER21B LTR ERV1 -269 594 98 392 208 0 94 chr3 39896493 39896599 -187627979 - MER21B LTR ERV1 -767 96 1 526 167 0 0 chr3 39896607 39896685 -187627893 - MLT1D LTR MaLR -426 79 2 1717 140 18 22 chr3 39896685 39896963 -187627615 + MER61B LTR ERV1 1 277 -148 354 183 0 0 chr3 39896958 39897018 -187627560 - AluJ SINE Alu -109 193 134 * 772 170 0 15 chr3 39897018 39897153 -187627425 - AluJ SINE Alu -169 133 1 560 216 81 20 chr3 39897153 39897301 -187627277 + MER5A DNA MER1_type 33 189 0 609 118 0 0 chr3 39897366 39897451 -187627127 - MER61B LTR ERV1 -29 396 312 733 104 0 0 chr3 39897457 39897553 -187627025 + AluJb SINE Alu 198 293 -19 1744 167 10 0 chr3 39898029 39898322 -187626256 - AluSx SINE Alu -14 298 3 2358 97 0 0 chr3 39898665 39898975 -187625603 - AluSx SINE Alu -2 310 1 2557 42 0 3 chr3 39899563 39899871 -187624707 - AluY SINE Alu -4 307 1 482 275 90 0 chr3 39900633 39900822 -187623756 + MIR SINE MIR 57 262 0 889 258 55 24 chr3 39901026 39901317 -187623261 + L1MC4a LINE L1 5525 5824 -1984 2093 110 7 7 chr3 39901317 39901625 -187622953 + AluSq SINE Alu 1 308 -5 329 335 90 30 chr3 39901720 39901920 -187622658 + L1MC4a LINE L1 5987 6198 -1610 728 174 116 6 chr3 39902225 39902397 -187622181 - AluSx SINE Alu -120 192 2 309 58 0 94 chr3 39903259 39903312 -187621266 - AluSc SINE Alu -3 296 252 6857 69 32 0 chr3 39904191 39905157 -187619421 - L1P LINE L1 -1102 5044 4048 1167 232 165 77 chr3 39905360 39905647 -187618931 + HAL1 LINE L1 164 424 -2083 811 179 4 118 chr3 39905647 39905692 -187618886 - MER20 DNA MER1_type -1 218 169 2247 98 0 0 chr3 39905692 39905987 -187618591 - AluSx SINE Alu -17 295 1 811 179 4 118 chr3 39905987 39906187 -187618391 - MER20 DNA MER1_type -50 169 1 1167 232 165 77 chr3 39906187 39906493 -187618085 + HAL1 LINE L1 424 809 -1698 388 312 0 29 chr3 39906570 39906743 -187617835 + C-rich Low_complexity Low_complexity 5 172 0 256 212 0 40 chr3 39906780 39906879 -187617699 + C-rich Low_complexity Low_complexity 5 99 0 436 360 11 0 chr3 39906927 39907102 -187617476 + C-rich Low_complexity Low_complexity 1 177 0 2745 127 13 33 chr3 39907244 39907700 -187616878 - L1MA6 LINE L1 -361 5939 5493 2145 103 7 3 chr3 39907703 39908004 -187616574 - AluSc SINE Alu -7 302 1 892 125 0 0 chr3 39908012 39908140 -187616438 - AluSq/x SINE Alu -185 128 1 252 301 52 7 chr3 39908392 39908528 -187616050 + L1P LINE L1 4905 5046 -1100 1857 134 10 24 chr3 39908605 39908903 -187615675 + AluJo SINE Alu 1 294 -18 1942 120 6 49 chr3 39909074 39909400 -187615178 + AluSx SINE Alu 1 312 0 913 165 77 0 chr3 39909532 39909702 -187614876 + MER5A DNA MER1_type 1 183 -6 1147 220 76 23 chr3 39909737 39910041 -187614537 + L1ME3A LINE L1 5850 6169 -1 1851 139 3 41 chr3 39910153 39910469 -187614109 - AluSx SINE Alu -8 304 1 521 253 131 23 chr3 39910471 39910819 -187613759 + L1MC4a LINE L1 5547 5781 -340 2333 67 0 7 chr3 39910960 39911260 -187613318 - AluSc SINE Alu -11 298 1 768 305 92 68 chr3 39912399 39913315 -187611263 + L2 LINE L2 2288 3246 -26 224 287 69 35 chr3 39913396 39913483 -187611095 - MIR SINE MIR -78 130 41 413 258 214 22 chr3 39913983 39914212 -187610366 + MER102a DNA MER1_type 58 330 0 1050 133 0 6 chr3 39914271 39914436 -187610142 + AluSg/x SINE Alu 132 295 -15 232 309 25 0 chr3 39915383 39915464 -187609114 - L2 LINE L2 -192 3080 2998 270 324 110 23 chr3 39915830 39916049 -187608529 + MARNA DNA Mariner 279 516 -70 1015 203 13 47 chr3 39916316 39916497 -187608081 - MER58A DNA MER1_type -2196 224 50 1849 112 52 0 chr3 39916497 39916785 -187607793 + AluSx SINE Alu 1 302 0 1015 203 13 47 chr3 39916785 39916834 -187607744 - MER58A DNA MER1_type -2370 50 1 22 35 0 0 chr3 39916885 39916914 -187607664 + AT_rich Low_complexity Low_complexity 1 29 0 237 261 46 15 chr3 39917019 39917084 -187607494 - MIR SINE MIR -114 148 82 282 189 14 14 chr3 39917342 39917416 -187607162 - Charlie8 DNA MER1_type -1906 511 438 * 352 279 0 36 chr3 39917415 39917526 -187607052 - Charlie8 DNA MER1_type -2224 193 87 693 194 47 52 chr3 39917903 39918090 -187606488 + MER5A DNA MER1_type 4 189 0 634 209 73 124 chr3 39918106 39918156 -187606422 - MER46C DNA MER2_type -1 337 286 2228 93 3 0 chr3 39918156 39918456 -187606122 - AluSp SINE Alu -12 301 1 634 209 73 124 chr3 39918456 39918760 -187605818 - MER46C DNA MER2_type -52 286 1 183 139 28 28 chr3 39919176 39919212 -187605366 + L2 LINE L2 3197 3232 -81 2193 115 0 6 chr3 39919238 39919552 -187605026 - AluSx SINE Alu 0 312 1 476 250 18 30 chr3 39919562 39919702 -187604876 - MIR SINE MIR -13 249 113 1258 265 120 19 chr3 39920376 39920802 -187603776 - MLT1J LTR MaLR -42 469 1 423 230 86 3 chr3 39920971 39921079 -187603499 - MER5A DNA MER1_type -72 106 1 862 112 22 8 chr3 39921298 39921432 -187603146 + AluJo SINE Alu 1 136 -176 2152 114 3 0 chr3 39921432 39921739 -187602839 + AluY SINE Alu 1 308 -3 291 221 182 0 chr3 39921994 39922071 -187602507 + MLT1J LTR MaLR 4 94 -417 441 277 157 19 chr3 39922142 39922409 -187602169 + MLT1J LTR MaLR 203 506 -5 2068 115 3 13 chr3 39922641 39922955 -187601623 - AluSx SINE Alu 0 312 2 294 253 12 12 chr3 39923752 39923835 -187600743 + L1ME LINE L1 5690 5772 -349 23 0 0 0 chr3 39925511 39925534 -187599044 + AT_rich Low_complexity Low_complexity 1 23 0 2175 84 0 3 chr3 39926353 39926649 -187597929 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 39926649 39926670 -187597908 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 39926966 39926990 -187597588 + AT_rich Low_complexity Low_complexity 1 24 0 33 73 0 0 chr3 39927202 39927270 -187597308 + GC_rich Low_complexity Low_complexity 1 68 0 863 85 62 15 chr3 39927494 39927624 -187596954 - L1PA11 LINE L1 -4 6170 6035 1733 122 0 4 chr3 39927627 39927864 -187596714 - AluSq SINE Alu -77 236 1 2308 123 0 0 chr3 39928484 39928793 -187595785 - AluSx SINE Alu -3 309 1 310 261 43 0 chr3 39929393 39929485 -187595093 - LTR67 LTR ERVL -363 194 99 297 311 108 29 chr3 39929548 39929827 -187594751 + L2 LINE L2 2763 3060 -212 2204 112 3 3 chr3 39930151 39930447 -187594131 + AluSx SINE Alu 1 296 -16 247 353 10 39 chr3 39931303 39931405 -187593173 - L3 LINE CR1 -12 1565 1467 2412 69 3 13 chr3 39931809 39932115 -187592463 + AluSp SINE Alu 11 313 0 338 316 75 26 chr3 39933297 39933525 -187591053 - MIR SINE MIR -12 250 12 253 236 34 0 chr3 39933699 39933788 -187590790 + CT-rich Low_complexity Low_complexity 1 92 0 865 90 16 64 chr3 39933789 39933893 -187590685 + (TTCC)n Simple_repeat Simple_repeat 2 95 -85 1688 129 66 0 chr3 39933893 39934134 -187590444 - AluSx SINE Alu -55 257 1 865 90 16 64 chr3 39934134 39934217 -187590361 + (TTCC)n Simple_repeat Simple_repeat 95 180 0 341 226 97 0 chr3 39934292 39934385 -187590193 + MER92B LTR ERV1 1 102 -534 2379 95 13 0 chr3 39934403 39934707 -187589871 - AluSp SINE Alu -5 308 1 881 112 132 71 chr3 39934747 39934944 -187589634 - MER67C LTR ERV1 -248 462 254 353 178 178 17 chr3 39934969 39935021 -187589557 - MER66A LTR ERV1 -52 426 384 2296 98 0 3 chr3 39935021 39935317 -187589261 + AluSq SINE Alu 1 295 -18 353 178 178 17 chr3 39935317 39935382 -187589196 - MER66A LTR ERV1 -94 384 290 291 175 0 0 chr3 39935387 39935444 -187589134 + CT-rich Low_complexity Low_complexity 2 58 0 1015 175 26 42 chr3 39935454 39935643 -187588935 - AluJo SINE Alu -126 186 1 4821 153 58 2 chr3 39935643 39936446 -187588132 + MER6 DNA MER2_type 14 861 -4 404 32 0 81 chr3 39936471 39936533 -187588045 + MLT2B1 LTR ERVL 464 520 0 346 213 0 83 chr3 39936535 39936643 -187587935 + MER5A DNA MER1_type 13 111 -78 184 309 32 43 chr3 39937664 39937758 -187586820 - MIR SINE MIR -121 141 49 561 244 102 43 chr3 39937767 39938225 -187586353 + MLT1H1 LTR MaLR 3 543 -12 408 195 80 44 chr3 39938587 39938700 -187585878 + L1ME4a LINE L1 5972 6088 -33 1468 122 0 108 chr3 39939061 39939357 -187585221 + AluJb SINE Alu 38 301 -11 2244 122 3 0 chr3 39939568 39939872 -187584706 - AluSq SINE Alu -8 305 1 362 269 88 31 chr3 39939886 39940079 -187584499 - L2 LINE L2 -5 3308 3105 612 258 72 16 chr3 39940089 39940326 -187584252 + MLT1G1 LTR MaLR 3 213 -377 673 202 8 0 chr3 39940335 39940454 -187584124 + FLAM_C SINE Alu 1 120 -13 1302 244 45 6 chr3 39940455 39940791 -187583787 + L1ME3 LINE L1 5784 6132 -30 2307 98 0 3 chr3 39940998 39941303 -187583275 - AluY SINE Alu -7 304 1 1831 164 3 3 chr3 39941305 39941598 -187582980 - AluSx SINE Alu -13 299 7 760 124 0 0 chr3 39941600 39941705 -187582873 - AluJo SINE Alu -173 139 35 313 188 71 24 chr3 39942032 39942117 -187582461 + MLT1J LTR MaLR 416 504 -7 427 276 43 22 chr3 39942207 39942392 -187582186 - L1MEc LINE L1 -5353 1043 855 225 361 24 0 chr3 39942543 39942626 -187581952 - LTR16C LTR ERVL -358 133 49 2482 64 7 0 chr3 39942736 39943033 -187581545 + AluSp SINE Alu 1 299 -14 295 275 18 28 chr3 39943427 39943536 -187581042 + MIR3 SINE MIR 96 203 -5 292 265 148 75 chr3 39943658 39943911 -187580667 + L1ME4a LINE L1 5608 5841 -280 2032 128 3 31 chr3 39943911 39944232 -187580346 + AluSq SINE Alu 1 312 -1 292 265 148 75 chr3 39944232 39944457 -187580121 + L1ME4a LINE L1 5841 6121 0 1071 282 92 34 chr3 39945035 39945258 -187579320 + LTR16C LTR ERVL 89 344 -147 2117 121 13 3 chr3 39945258 39945565 -187579013 + AluSx SINE Alu 1 310 -2 1071 282 92 34 chr3 39945565 39945720 -187578858 + LTR16C LTR ERVL 344 489 -2 663 266 44 18 chr3 39946333 39946562 -187578016 + L1MA9 LINE L1 6040 6274 -38 1535 170 0 24 chr3 39946574 39946896 -187577682 + AluSx SINE Alu 1 315 0 477 84 0 0 chr3 39947621 39947692 -187576886 + (GGGGA)n Simple_repeat Simple_repeat 3 73 0 1227 111 106 0 chr3 39947694 39947902 -187576676 + L1PA14 LINE L1 5932 6161 0 601 178 20 0 chr3 39947967 39948068 -187576510 - MER94 DNA DNA -29 105 3 343 282 169 0 chr3 39948283 39948407 -187576171 - MIR3 SINE MIR -6 202 58 378 239 0 11 chr3 39948429 39948517 -187576061 + MER5A DNA MER1_type 9 95 -94 1827 209 36 58 chr3 39948534 39949002 -187575576 - LTR40c LTR ERVL -5 460 3 2371 68 0 0 chr3 39949026 39949304 -187575274 - AluSq SINE Alu -17 296 19 1458 145 40 13 chr3 39949305 39949532 -187575046 - AluSg1 SINE Alu -76 233 1 181 0 69 0 chr3 39949551 39949580 -187574998 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 492 204 232 0 chr3 39950254 39950396 -187574182 + MER5A DNA MER1_type 9 183 -6 1144 289 48 50 chr3 39950542 39950998 -187573580 + MLT1J LTR MaLR 24 478 -33 405 266 50 7 chr3 39951587 39951726 -187572852 - MIR SINE MIR -50 212 68 304 285 124 29 chr3 39951946 39952083 -187572495 - MIR3 SINE MIR -23 185 36 1830 151 14 0 chr3 39952386 39952664 -187571914 - AluJb SINE Alu -7 305 24 25 31 0 0 chr3 39952935 39952967 -187571611 + AT_rich Low_complexity Low_complexity 1 32 0 1500 159 32 62 chr3 39952972 39953280 -187571298 + AluJo SINE Alu 1 299 -13 270 310 20 41 chr3 39953936 39954133 -187570445 + L1ME3 LINE L1 4243 4435 -1711 418 298 28 33 chr3 39954143 39954358 -187570220 + L1ME3 LINE L1 5735 5948 -214 1858 151 7 0 chr3 39954656 39954930 -187569648 + AluJb SINE Alu 5 283 -29 204 40 0 0 chr3 39954930 39954955 -187569623 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 212 214 0 0 chr3 39955186 39955228 -187569350 + MIR3 SINE MIR 156 197 -11 24 32 0 0 chr3 39955685 39955716 -187568862 + AT_rich Low_complexity Low_complexity 1 31 0 2130 97 36 0 chr3 39955717 39955996 -187568582 - AluSg SINE Alu -21 289 1 850 206 60 14 chr3 39955996 39956214 -187568364 + L1MC5 LINE L1 7698 7925 -36 315 0 0 0 chr3 39956537 39956572 -187568006 + (CA)n Simple_repeat Simple_repeat 2 36 0 2263 89 0 10 chr3 39956574 39956865 -187567713 - AluSx SINE Alu -24 288 1 213 244 0 0 chr3 39956872 39956913 -187567665 - L2 LINE L2 -17 3296 3256 335 252 101 8 chr3 39957105 39957174 -187567404 + MER5A DNA MER1_type 45 106 -83 1858 151 22 26 chr3 39957174 39957485 -187567093 - AluSx SINE Alu -2 310 1 335 252 101 8 chr3 39957485 39957534 -187567044 + MER5A DNA MER1_type 106 174 -15 235 235 71 12 chr3 39957682 39957767 -187566811 - MIR SINE MIR -124 138 49 2319 99 0 0 chr3 39957921 39958213 -187566365 + AluSq SINE Alu 1 292 -21 356 177 20 7 chr3 39958229 39958376 -187566202 + (TA)n Simple_repeat Simple_repeat 1 149 0 1855 167 3 6 chr3 39959621 39959932 -187564646 + AluSq SINE Alu 4 313 0 1734 185 3 0 chr3 39960049 39960341 -187564237 - AluSx SINE Alu -17 295 3 4496 133 63 51 chr3 39960424 39961695 -187562883 - pTR5 LTR ERV1 -125 2212 6 241 313 0 48 chr3 39961986 39962069 -187562509 + L3 LINE CR1 1480 1558 -19 1511 166 6 113 chr3 39962855 39962974 -187561604 + AluJo SINE Alu 1 131 -171 262 0 53 0 chr3 39962974 39963012 -187561566 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1511 166 6 113 chr3 39963012 39963218 -187561360 + AluJo SINE Alu 131 291 -11 806 218 0 6 chr3 39963220 39963376 -187561202 + FRAM SINE Alu 1 154 -22 206 238 0 0 chr3 39963458 39963500 -187561078 + (CA)n Simple_repeat Simple_repeat 2 43 0 4417 253 68 38 chr3 39963550 39965069 -187559509 - L2 LINE L2 0 3313 1733 1915 123 39 0 chr3 39965069 39965353 -187559225 + AluSx SINE Alu 1 295 -17 4417 253 68 38 chr3 39965353 39965661 -187558917 - L2 LINE L2 -1580 1733 1436 777 237 19 14 chr3 39965661 39965876 -187558702 + HAL1 LINE L1 1431 1646 -861 791 224 141 9 chr3 39965883 39966299 -187558279 + LTR33 LTR ERVL 1 521 0 250 257 43 14 chr3 39966301 39966371 -187558207 + HAL1 LINE L1 1652 1723 -784 726 271 101 49 chr3 39966374 39966612 -187557966 + HAL1 LINE L1 1775 2036 -471 2457 93 0 0 chr3 39966612 39966924 -187557654 + AluSx SINE Alu 1 312 0 726 271 101 49 chr3 39966924 39967013 -187557565 + HAL1 LINE L1 2036 2119 -388 186 238 0 0 chr3 39967239 39967281 -187557297 + MIR SINE MIR 81 122 -140 214 114 29 0 chr3 39967310 39967345 -187557233 + L2 LINE L2 3219 3254 -18 216 0 0 0 chr3 39967765 39967789 -187556789 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1719 146 32 0 chr3 39967791 39968044 -187556534 - AluJb SINE Alu -32 280 20 815 256 44 24 chr3 39968135 39968385 -187556193 - MIR SINE MIR -1 261 7 33 25 0 0 chr3 39969358 39969398 -187555180 + GC_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 39970795 39970815 -187553763 + (TTG)n Simple_repeat Simple_repeat 2 21 0 625 226 47 42 chr3 39971010 39971200 -187553378 + MIR SINE MIR 14 204 -58 21 71 0 0 chr3 39971347 39971389 -187553189 + AT_rich Low_complexity Low_complexity 1 42 0 1865 162 7 3 chr3 39972132 39972265 -187552313 + AluJb SINE Alu 1 132 -180 2363 97 3 0 chr3 39972265 39972564 -187552014 + AluSx SINE Alu 1 300 -12 1865 162 7 3 chr3 39972564 39972749 -187551829 + AluJb SINE Alu 132 312 0 208 246 15 31 chr3 39973000 39973065 -187551513 - MIR SINE MIR -119 143 80 1993 103 48 0 chr3 39973496 39973798 -187550780 - AluSp SINE Alu 0 316 2 267 204 40 164 chr3 39973952 39973985 -187550593 - MIR SINE MIR -114 148 112 1888 166 0 10 chr3 39973985 39974281 -187550297 - AluJb SINE Alu -19 293 1 267 204 40 164 chr3 39974281 39974361 -187550217 - MIR SINE MIR -150 112 56 2117 112 14 0 chr3 39974361 39974657 -187549921 + AluSx SINE Alu 1 300 -12 267 204 40 164 chr3 39974657 39974694 -187549884 - MIR SINE MIR -206 56 16 206 292 108 8 chr3 39974939 39975059 -187549519 + MIR3 SINE MIR 76 207 -1 1241 200 9 5 chr3 39975696 39975916 -187548662 - MER58A DNA MER1_type -3 221 1 1420 176 3 48 chr3 39975916 39976243 -187548335 - AluJo SINE Alu 0 320 7 245 229 0 0 chr3 39976328 39976376 -187548202 + L2 LINE L2 3264 3311 -2 214 208 83 104 chr3 39976653 39976676 -187547902 + MIR3 SINE MIR 66 88 -120 2177 129 0 3 chr3 39976676 39976978 -187547600 + AluSx SINE Alu 1 301 -11 214 208 83 104 chr3 39976978 39977050 -187547528 + MIR3 SINE MIR 88 159 -49 315 288 38 38 chr3 39977073 39977205 -187547373 - L2 LINE L2 0 3272 3141 231 198 63 72 chr3 39977568 39977641 -187546937 - L1ME4a LINE L1 -5 6116 6043 1442 191 62 17 chr3 39977641 39977929 -187546649 + AluJo SINE Alu 1 301 -11 231 198 63 72 chr3 39977929 39977966 -187546612 - L1ME4a LINE L1 -78 6043 6007 1640 156 45 14 chr3 39977973 39978261 -187546317 - AluJo SINE Alu -1 311 15 254 175 0 0 chr3 39978529 39978569 -187546009 - L1ME LINE L1 -462 5659 5620 2223 110 0 3 chr3 39978620 39978921 -187545657 - AluY SINE Alu -11 300 1 2344 93 6 0 chr3 39979235 39979546 -187545032 - AluSp SINE Alu 0 313 1 2115 117 7 0 chr3 39979816 39980115 -187544463 - AluSx SINE Alu -11 301 1 1739 169 14 0 chr3 39980729 39981008 -187543570 + AluJb SINE Alu 1 283 -29 761 180 31 0 chr3 39981081 39981209 -187543369 + FLAM_A SINE Alu 1 132 -1 188 362 121 9 chr3 39981255 39981371 -187543207 - MIR3 SINE MIR -36 172 44 2409 71 3 3 chr3 39981410 39981707 -187542871 - AluSp SINE Alu -16 297 1 234 91 0 0 chr3 39981829 39981862 -187542716 + (T)n Simple_repeat Simple_repeat 1 33 0 464 182 136 0 chr3 39981862 39981972 -187542606 + MER58C DNA MER1_type 79 203 -12 1357 135 5 5 chr3 39982035 39982235 -187542343 - AluJb SINE Alu -27 285 86 2220 109 0 25 chr3 39982716 39983036 -187541542 - AluSq SINE Alu 0 313 2 1573 208 40 0 chr3 39983437 39983735 -187540843 + AluJo SINE Alu 1 310 -2 360 320 106 29 chr3 39983989 39984313 -187540265 - L2 LINE L2 -181 3091 2736 390 239 56 46 chr3 39984331 39984528 -187540050 - L1MC4 LINE L1 -15 8027 7829 2201 125 3 0 chr3 39985102 39985407 -187539171 + AluSx SINE Alu 1 306 -6 184 309 29 15 chr3 39985524 39985592 -187538986 - L2 LINE L2 -15 3257 3189 254 244 179 0 chr3 39985719 39985797 -187538781 + MIR3 SINE MIR 114 205 -3 431 278 86 13 chr3 39986396 39986547 -187538031 + MIR SINE MIR 18 179 -83 1478 201 0 7 chr3 39986917 39987190 -187537388 - AluJb SINE Alu -12 300 30 2161 67 34 0 chr3 39987276 39987578 -187537000 + AluSc SINE Alu 1 311 0 365 228 40 199 chr3 39987623 39987809 -187536769 - L2 LINE L2 -38 3275 3192 583 190 25 25 chr3 39987809 39987930 -187536648 + FLAM_C SINE Alu 2 122 -11 365 228 40 199 chr3 39987930 39988165 -187536413 - L2 LINE L2 -121 3192 2921 289 307 165 25 chr3 39988202 39988518 -187536060 - L2 LINE L2 -940 2374 2015 293 291 152 68 chr3 39988603 39988971 -187535607 + L2 LINE L2 2569 2967 -347 638 175 35 0 chr3 39989311 39989425 -187535153 - FLAM_C SINE Alu -15 118 1 994 179 19 0 chr3 39989429 39989591 -187534987 + MER5A DNA MER1_type 2 166 -23 183 264 19 19 chr3 39989592 39989645 -187534933 + MER5A DNA MER1_type 136 188 -1 2400 88 3 0 chr3 39989814 39990121 -187534457 - AluSp SINE Alu -5 308 1 366 129 129 0 chr3 39990452 39990537 -187534041 - L1MA8 LINE L1 -2 6289 6194 25 0 0 0 chr3 39990920 39990945 -187533633 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 39991206 39991231 -187533347 + AT_rich Low_complexity Low_complexity 1 25 0 2300 143 35 56 chr3 39991390 39991806 -187532772 - L1MA8 LINE L1 -2 6289 5885 1843 135 39 30 chr3 39991806 39992140 -187532438 - MER1B DNA MER1_type 0 337 1 2300 143 35 56 chr3 39992140 39992241 -187532337 - L1MA8 LINE L1 -406 5885 5783 219 241 25 25 chr3 39992261 39992340 -187532238 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 800 103 34 62 chr3 39992340 39992486 -187532092 - L1MA8 LINE L1 -502 5789 5648 2112 97 4 4 chr3 39992987 39993287 -187531291 - AluSg SINE Alu 0 300 1 2310 115 0 0 chr3 39993820 39994124 -187530454 - AluSx SINE Alu -8 304 1 225 203 31 16 chr3 39994168 39994232 -187530346 + MLT1K LTR MaLR 514 578 -10 1886 89 100 4 chr3 39995491 39995761 -187528817 - AluSg SINE Alu -14 296 1 1693 159 23 27 chr3 39996166 39996467 -187528111 - AluJb SINE Alu -12 300 1 2334 92 0 29 chr3 39996544 39996860 -187527718 + AluSg1 SINE Alu 1 307 -2 758 218 10 42 chr3 39997085 39997278 -187527300 + MER5A DNA MER1_type 2 188 -1 2073 122 10 0 chr3 39997545 39997841 -187526737 + AluSg SINE Alu 1 299 -11 1617 153 55 0 chr3 39997849 39998124 -187526454 + AluJo SINE Alu 1 290 -22 240 280 148 37 chr3 39998220 39998463 -187526115 - L1ME LINE L1 -267 5854 5585 2253 106 0 3 chr3 39999549 39999852 -187524726 - AluSq SINE Alu -11 302 1 2147 84 0 18 chr3 40000050 40000364 -187524214 + AluY SINE Alu 6 314 0 2369 57 14 0 chr3 40000379 40000683 -187523895 + AluY SINE Alu 1 308 0 2287 81 0 3 chr3 40001499 40001795 -187522783 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 40001795 40001816 -187522762 + AT_rich Low_complexity Low_complexity 1 21 0 512 164 138 17 chr3 40001967 40002083 -187522495 - FLAM_A SINE Alu 0 133 4 861 40 49 18 chr3 40002113 40002341 -187522237 + (TA)n Simple_repeat Simple_repeat 1 235 0 21 36 0 0 chr3 40002398 40002426 -187522152 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr3 40003043 40003101 -187521477 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr3 40004487 40004510 -187520068 + AT_rich Low_complexity Low_complexity 1 23 0 2117 123 10 7 chr3 40006038 40006340 -187518238 + AluSx SINE Alu 1 303 -9 1831 178 14 0 chr3 40006354 40006647 -187517931 + AluJb SINE Alu 3 299 -13 1213 139 0 60 chr3 40006730 40006945 -187517633 - AluJb SINE Alu -24 288 87 180 0 0 0 chr3 40007706 40007726 -187516852 + (TA)n Simple_repeat Simple_repeat 1 20 0 2168 114 7 7 chr3 40007732 40008030 -187516548 - AluSx SINE Alu -14 298 1 1039 148 120 10 chr3 40008183 40008392 -187516186 + MER46A DNA MER2_type 5 236 0 698 232 140 51 chr3 40008840 40009155 -187515423 - L2 LINE L2 -337 2977 2635 1016 159 67 0 chr3 40009334 40009529 -187515049 - MER3 DNA MER1_type -1 208 1 23 33 0 0 chr3 40009971 40010001 -187514577 + AT_rich Low_complexity Low_complexity 1 30 0 606 242 130 37 chr3 40010088 40010303 -187514275 - MIR SINE MIR -13 249 15 367 326 81 5 chr3 40010887 40011137 -187513441 - L1MC/D LINE L1 -348 5773 5494 25 51 0 0 chr3 40011389 40011428 -187513150 + AT_rich Low_complexity Low_complexity 1 39 0 1657 181 84 35 chr3 40011794 40012070 -187512508 - L1MB7 LINE L1 -2 6182 5921 2285 102 26 0 chr3 40012070 40012374 -187512204 - AluSx SINE Alu 0 312 1 1657 181 84 35 chr3 40012374 40012713 -187511865 - L1MB7 LINE L1 -263 5921 5482 307 247 124 0 chr3 40012714 40012811 -187511767 - HAL1 LINE L1 -2322 185 77 1028 118 0 0 chr3 40012905 40013041 -187511537 - AluSx SINE Alu -19 293 158 850 107 0 0 chr3 40013041 40013153 -187511425 - AluSx SINE Alu -200 112 1 225 0 0 0 chr3 40013534 40013559 -187511019 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40014127 40014150 -187510428 + (TA)n Simple_repeat Simple_repeat 2 24 0 1727 140 89 0 chr3 40014304 40014619 -187509959 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40014637 40014659 -187509919 + AT_rich Low_complexity Low_complexity 1 22 0 2061 91 18 4 chr3 40015096 40015372 -187509206 + AluSg SINE Alu 17 296 -14 830 225 116 20 chr3 40015439 40015785 -187508793 - L1ME3A LINE L1 -10 6160 5782 1246 207 52 65 chr3 40015810 40016001 -187508577 - MLT1D LTR MaLR 0 505 320 2430 72 3 0 chr3 40016001 40016308 -187508270 - AluY SINE Alu -3 308 1 1246 207 52 65 chr3 40016308 40016502 -187508076 - MLT1D LTR MaLR -185 320 125 6809 151 73 43 chr3 40016502 40016716 -187507862 - L1MCa LINE L1 -4828 1598 1392 2053 148 0 0 chr3 40016716 40017014 -187507564 - AluJb SINE Alu -14 298 1 6809 151 73 43 chr3 40017014 40018263 -187506315 - L1MCa LINE L1 -5034 1392 85 2377 91 0 0 chr3 40018263 40018561 -187506017 - AluSq SINE Alu -11 302 5 6809 151 73 43 chr3 40018561 40018622 -187505956 - L1MCa LINE L1 -6341 85 27 499 187 81 16 chr3 40018624 40018747 -187505831 - MLT1D LTR MaLR -374 131 1 528 232 34 39 chr3 40018747 40018954 -187505624 - L1ME3A LINE L1 -412 5750 5545 4281 173 48 6 chr3 40018955 40019841 -187504737 + L1MB7 LINE L1 5215 6139 -45 2452 71 0 0 chr3 40019841 40020136 -187504442 + AluY SINE Alu 1 295 -16 4281 173 48 6 chr3 40020136 40020158 -187504420 + L1MB7 LINE L1 6139 6159 -25 677 242 56 0 chr3 40020186 40020401 -187504177 - L1ME3A LINE L1 -619 5545 5319 2407 92 7 0 chr3 40020427 40020732 -187503846 - AluSp SINE Alu -6 307 1 201 39 0 0 chr3 40020759 40020785 -187503793 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 236 315 71 55 chr3 40021039 40021166 -187503412 + MIR3 SINE MIR 11 139 -69 2115 120 0 16 chr3 40021621 40021929 -187502649 - AluSx SINE Alu -9 303 1 1889 165 0 0 chr3 40022550 40022835 -187501743 + AluJb SINE Alu 10 294 -18 1549 158 16 66 chr3 40022986 40023289 -187501289 + AluJb SINE Alu 1 288 -24 287 283 101 19 chr3 40023640 40023799 -187500779 + L1MC4a LINE L1 4076 4247 -1899 2089 143 3 0 chr3 40023804 40024105 -187500473 + AluSq SINE Alu 4 305 -8 1438 191 37 72 chr3 40024324 40024700 -187499878 - MLT1A2 LTR MaLR -11 363 1 1988 145 0 28 chr3 40024739 40025057 -187499521 - AluJo SINE Alu -3 309 1 259 213 62 0 chr3 40025071 40025151 -187499427 - HAL1 LINE L1 -341 2166 2082 246 172 17 0 chr3 40025181 40025239 -187499339 + T-rich Low_complexity Low_complexity 1 59 0 378 254 14 21 chr3 40025611 40025753 -187498825 - HAL1 LINE L1 -677 1830 1690 3134 242 119 61 chr3 40025827 40026458 -187498120 - HAL1 LINE L1 -622 1885 1292 1776 138 98 7 chr3 40026458 40026734 -187497844 - AluJb SINE Alu -11 301 1 3134 242 119 61 chr3 40026734 40027459 -187497119 - HAL1 LINE L1 -1215 1292 611 815 175 4 118 chr3 40027459 40027659 -187496919 + MER20 DNA MER1_type 1 169 -50 2358 98 0 0 chr3 40027659 40027954 -187496624 + AluSx SINE Alu 1 295 -17 815 175 4 118 chr3 40027954 40027999 -187496579 + MER20 DNA MER1_type 169 218 -1 3134 242 119 61 chr3 40027999 40028293 -187496285 - HAL1 LINE L1 -1896 611 336 2376 86 0 13 chr3 40028293 40028458 -187496120 - AluSx SINE Alu -14 298 137 2307 94 0 13 chr3 40028458 40028757 -187495821 - AluSg SINE Alu -15 295 1 2376 86 0 13 chr3 40028757 40028893 -187495685 - AluSx SINE Alu -175 137 1 3134 242 119 61 chr3 40028893 40029011 -187495567 - HAL1 LINE L1 -2171 336 12 280 305 38 0 chr3 40029149 40029280 -187495298 + L1MC4a LINE L1 4907 5042 -1104 1977 134 10 24 chr3 40029360 40029658 -187494920 + AluJo SINE Alu 1 294 -18 1942 120 6 49 chr3 40029829 40030155 -187494423 + AluSx SINE Alu 1 312 0 913 165 77 0 chr3 40030287 40030457 -187494121 + MER5A DNA MER1_type 1 183 -6 1185 220 72 23 chr3 40030492 40030797 -187493781 + L1ME3A LINE L1 5850 6169 -1 1851 139 3 41 chr3 40030909 40031225 -187493353 - AluSx SINE Alu -8 304 1 521 253 131 23 chr3 40031227 40031575 -187493003 + L1MC4a LINE L1 5547 5781 -340 2333 67 0 7 chr3 40031716 40032016 -187492562 - AluSc SINE Alu -11 298 1 768 305 92 68 chr3 40033155 40034071 -187490507 + L2 LINE L2 2288 3246 -26 224 287 69 35 chr3 40034152 40034239 -187490339 - MIR SINE MIR -78 130 41 413 258 214 22 chr3 40034739 40034968 -187489610 + MER102a DNA MER1_type 58 330 0 1050 133 0 6 chr3 40035027 40035192 -187489386 + AluSg/x SINE Alu 132 295 -15 232 309 25 0 chr3 40036139 40036220 -187488358 - L2 LINE L2 -192 3080 2998 270 324 110 23 chr3 40036587 40036806 -187487772 + MARNA DNA Mariner 279 516 -70 1015 203 13 47 chr3 40037073 40037254 -187487324 - MER58A DNA MER1_type -2196 224 50 1849 112 52 0 chr3 40037254 40037542 -187487036 + AluSx SINE Alu 1 302 0 1015 203 13 47 chr3 40037542 40037591 -187486987 - MER58A DNA MER1_type -2370 50 1 22 35 0 0 chr3 40037642 40037671 -187486907 + AT_rich Low_complexity Low_complexity 1 29 0 237 261 46 15 chr3 40037776 40037841 -187486737 - MIR SINE MIR -114 148 82 282 189 14 14 chr3 40038099 40038173 -187486405 - Charlie8 DNA MER1_type -1906 511 438 * 352 279 0 36 chr3 40038172 40038283 -187486295 - Charlie8 DNA MER1_type -2235 182 76 693 194 47 52 chr3 40038660 40038847 -187485731 + MER5A DNA MER1_type 4 189 0 689 226 79 48 chr3 40038863 40038913 -187485665 - MER46C DNA MER2_type -1 337 290 2228 93 3 0 chr3 40038913 40039213 -187485365 - AluSp SINE Alu -12 301 1 689 226 79 48 chr3 40039213 40039517 -187485061 - MER46C DNA MER2_type -48 290 1 2103 116 7 7 chr3 40039994 40040304 -187484274 - AluSx SINE Alu 0 312 3 524 280 21 28 chr3 40040318 40040461 -187484117 - MIR SINE MIR -13 249 108 1258 265 120 19 chr3 40041132 40041558 -187483020 - MLT1J LTR MaLR -42 469 1 423 230 86 3 chr3 40041727 40041835 -187482743 - MER5A DNA MER1_type -72 106 1 862 112 22 8 chr3 40042054 40042188 -187482390 + AluJo SINE Alu 1 136 -176 2152 114 3 0 chr3 40042188 40042495 -187482083 + AluY SINE Alu 1 308 -3 291 221 182 0 chr3 40042750 40042827 -187481751 + MLT1J LTR MaLR 4 94 -417 441 277 157 19 chr3 40042898 40043165 -187481413 + MLT1J LTR MaLR 203 506 -5 2068 115 3 13 chr3 40043397 40043711 -187480867 - AluSx SINE Alu 0 312 2 294 253 12 12 chr3 40044508 40044591 -187479987 + L1ME LINE L1 5690 5772 -349 1823 164 0 3 chr3 40046422 40046727 -187477851 - AluJo SINE Alu -8 304 1 2173 95 0 16 chr3 40046992 40047297 -187477281 + AluSq SINE Alu 1 300 -13 323 302 0 28 chr3 40047324 40047430 -187477148 + Charlie8 DNA MER1_type 143 245 -2172 21 36 0 0 chr3 40048624 40048652 -187475926 + AT_rich Low_complexity Low_complexity 1 28 0 2245 81 0 3 chr3 40048698 40048994 -187475584 + AluSc SINE Alu 1 295 -14 1741 161 0 20 chr3 40049045 40049350 -187475228 + AluJb SINE Alu 1 299 -13 328 305 40 63 chr3 40051805 40052028 -187472550 + MLT1K LTR MaLR 13 230 -358 766 187 30 74 chr3 40052077 40052280 -187472298 - MIR SINE MIR -5 257 64 206 162 0 27 chr3 40052320 40052357 -187472221 + L2 LINE L2 3263 3298 -15 1360 183 29 42 chr3 40052442 40052754 -187471824 - AluJo SINE Alu -4 308 1 293 85 0 0 chr3 40052754 40052801 -187471777 - L1MA7 LINE L1 -45 6246 6200 1632 161 50 7 chr3 40052813 40053112 -187471466 - AluJb SINE Alu 0 312 1 233 296 0 14 chr3 40053241 40053312 -187471266 + MLT1L LTR MaLR 432 501 -114 3122 191 95 9 chr3 40053867 40054582 -187469996 + L1ME1 LINE L1 5382 6161 -5 295 328 91 27 chr3 40054616 40054802 -187469776 + L2 LINE L2 3070 3267 -5 361 189 54 0 chr3 40055187 40055261 -187469317 + MER116 DNA Mariner 2 79 -1 2167 87 10 3 chr3 40055316 40055614 -187468964 + AluSx SINE Alu 1 300 -12 247 275 77 22 chr3 40055661 40055752 -187468826 - MIR SINE MIR -77 131 36 272 244 35 12 chr3 40055817 40055903 -187468675 + L1ME4a LINE L1 5531 5618 -503 230 200 13 13 chr3 40056388 40056463 -187468115 + L1ME4a LINE L1 6047 6121 0 1063 152 0 17 chr3 40056993 40057171 -187467407 + FRAM SINE Alu 1 173 -3 4396 128 63 7 chr3 40057508 40058318 -187466260 + L1MA8 LINE L1 5216 6061 -230 2428 115 15 38 chr3 40058546 40058945 -187465633 - MLT1B LTR MaLR 0 390 1 239 242 16 0 chr3 40058980 40059042 -187465536 + CT-rich Low_complexity Low_complexity 2 64 0 210 37 0 0 chr3 40059886 40059913 -187464665 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 314 244 61 10 chr3 40060030 40060179 -187464399 - MIR SINE MIR -59 203 16 2306 94 3 0 chr3 40060226 40060533 -187464045 - AluSx SINE Alu -4 308 1 199 254 68 34 chr3 40060723 40060782 -187463796 - L2 LINE L2 -8 3305 3245 370 213 13 0 chr3 40060810 40060885 -187463693 - MIR SINE MIR -11 251 176 1024 231 97 64 chr3 40060895 40061429 -187463149 + MLT1F LTR MaLR 6 592 -3 296 269 8 82 chr3 40061441 40061575 -187463003 - MIR SINE MIR -103 159 36 538 305 133 50 chr3 40061829 40062108 -187462470 + L2 LINE L2 2955 3256 -16 217 366 0 0 chr3 40062129 40062200 -187462378 - L2 LINE L2 -219 3053 2983 365 264 52 69 chr3 40062200 40062374 -187462204 + MER5B DNA MER1_type 2 172 -6 225 224 69 0 chr3 40062416 40062474 -187462104 - MIR SINE MIR -25 237 176 256 289 26 0 chr3 40062803 40062879 -187461699 - L2 LINE L2 -3 3310 3233 757 265 87 17 chr3 40063301 40063531 -187461047 - MIR SINE MIR -3 259 14 2314 60 0 0 chr3 40063998 40064333 -187460245 + AluY SINE Alu 1 335 0 1784 218 3 11 chr3 40064420 40064773 -187459805 - MLT1A2 LTR MaLR -24 350 1 704 283 40 31 chr3 40064773 40064996 -187459582 + MLT1K LTR MaLR 23 247 -341 1507 189 37 53 chr3 40065004 40065384 -187459194 + MLT1B LTR MaLR 1 374 -16 598 197 175 44 chr3 40065443 40065626 -187458952 + MLT1K LTR MaLR 323 529 -59 1536 178 47 10 chr3 40065626 40065924 -187458654 - AluJo SINE Alu -3 309 1 829 176 0 0 chr3 40065938 40066069 -187458509 - FLAM_A SINE Alu -2 131 1 257 114 0 0 chr3 40066680 40066715 -187457863 - MER5A DNA MER1_type -1 188 154 796 177 71 0 chr3 40066756 40066897 -187457681 - MER5A DNA MER1_type -38 151 1 436 208 0 13 chr3 40067347 40067424 -187457154 - MER5A DNA MER1_type 0 189 114 1502 153 80 4 chr3 40067529 40067804 -187456774 - AluJb SINE Alu -16 296 1 868 202 0 11 chr3 40067930 40068108 -187456470 - FRAM SINE Alu 0 176 1 905 158 50 104 chr3 40068182 40068357 -187456221 - AluJo SINE Alu 0 312 152 2358 56 23 0 chr3 40068357 40068661 -187455917 - AluY SINE Alu 0 311 1 905 158 50 104 chr3 40068661 40068725 -187455853 - AluJo SINE Alu -160 152 86 308 336 9 9 chr3 40068726 40068839 -187455739 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40068863 40068917 -187455661 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40068917 40069358 -187455220 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40069608 40069661 -187454917 + GC_rich Low_complexity Low_complexity 1 53 0 820 157 116 25 chr3 40071408 40071606 -187452972 + AluJo SINE Alu 87 302 -10 2151 100 0 7 chr3 40072510 40072810 -187451768 - AluSc SINE Alu -11 298 1 1611 152 10 30 chr3 40072817 40073114 -187451464 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 40073131 40073356 -187451222 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 40073390 40074039 -187450539 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 40074039 40074319 -187450259 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 40074319 40074344 -187450234 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 40074344 40074439 -187450139 + L1MB8 LINE L1 6082 6157 -21 970 243 83 99 chr3 40074841 40075267 -187449311 - MER41C LTR ERV1 0 554 138 2319 71 0 3 chr3 40075267 40075561 -187449017 + AluSc SINE Alu 1 293 -16 970 243 83 99 chr3 40075561 40075697 -187448881 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 40076006 40076091 -187448487 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 40076192 40076516 -187448062 - L2 LINE L2 0 3313 2932 1694 106 36 18 chr3 40076516 40076791 -187447787 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 40076791 40076925 -187447653 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 40077012 40077112 -187447466 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 40077658 40077681 -187446897 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 40077700 40077782 -187446796 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 40077835 40078133 -187446445 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 40078201 40078506 -187446072 - AluSc SINE Alu 0 309 1 196 42 0 0 chr3 40079898 40079922 -187444656 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 1982 112 0 33 chr3 40079922 40080228 -187444350 - AluSx SINE Alu -1 319 1 320 64 21 0 chr3 40080348 40080395 -187444183 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1901 106 7 14 chr3 40080397 40080679 -187443899 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 40081022 40081328 -187443250 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 40081331 40081434 -187443144 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 40081503 40081625 -187442953 - L1ME4a LINE L1 -225 5896 5768 2156 112 3 3 chr3 40081952 40082264 -187442314 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 40082266 40082444 -187442134 - MIR SINE MIR -74 188 1 1479 214 117 93 chr3 40082519 40083107 -187441471 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 40083304 40083409 -187441169 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 40083411 40083584 -187440994 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 40083896 40084177 -187440401 - L1MC4a LINE L1 -1895 5913 5629 901 206 70 75 chr3 40084472 40084882 -187439696 - LTR16A1 LTR ERVL -4 453 15 827 218 81 21 chr3 40085696 40086107 -187438471 + MLT1D LTR MaLR 1 505 0 2031 103 3 3 chr3 40086689 40086979 -187437599 - AluSc SINE Alu -17 292 3 1959 212 61 15 chr3 40086987 40087463 -187437115 - L1MC4 LINE L1 0 8042 7545 393 284 9 0 chr3 40087740 40087849 -187436729 - MIR SINE MIR -37 225 116 380 343 42 50 chr3 40087892 40088175 -187436403 + L2 LINE L2 3028 3308 -5 349 252 10 29 chr3 40088845 40088948 -187435630 - L2 LINE L2 -1 3271 3171 1852 223 130 20 chr3 40088996 40089535 -187435043 - HsTC2 DNA Tc2 -40 1858 1261 635 86 0 0 chr3 40089598 40089679 -187434899 + AluS SINE Alu 2 82 -230 249 267 40 10 chr3 40089691 40089792 -187434786 - L2 LINE L2 -253 3019 2916 2214 105 0 7 chr3 40090005 40090310 -187434268 + AluSq SINE Alu 3 305 -8 1557 184 47 71 chr3 40090524 40090905 -187433673 - MLT1A2 LTR MaLR -2 372 1 1840 148 0 28 chr3 40090944 40091262 -187433316 - AluJo SINE Alu -3 309 1 260 230 58 0 chr3 40091276 40091363 -187433215 - HAL1 LINE L1 -341 2166 2075 246 172 17 0 chr3 40091386 40091444 -187433134 + T-rich Low_complexity Low_complexity 1 59 0 433 254 14 21 chr3 40091816 40091958 -187432620 - HAL1 LINE L1 -677 1830 1690 3625 236 108 62 chr3 40092032 40092663 -187431915 - HAL1 LINE L1 -622 1885 1285 1653 138 98 7 chr3 40092663 40092939 -187431639 - AluJb SINE Alu -11 301 1 3625 236 108 62 chr3 40092939 40093665 -187430913 - HAL1 LINE L1 -1222 1285 436 836 175 4 118 chr3 40093665 40093865 -187430713 + MER20 DNA MER1_type 1 169 -50 2247 98 0 0 chr3 40093865 40094160 -187430418 + AluSx SINE Alu 1 295 -17 836 175 4 118 chr3 40094160 40094205 -187430373 + MER20 DNA MER1_type 169 218 -1 3625 236 108 62 chr3 40094205 40094496 -187430082 - HAL1 LINE L1 -2071 436 160 1229 103 0 0 chr3 40094499 40094664 -187429914 - AluSg/x SINE Alu -14 296 132 2218 90 0 13 chr3 40094664 40094965 -187429613 - AluSx SINE Alu -15 297 1 1386 198 44 26 chr3 40094965 40095304 -187429274 - L1MB7 LINE L1 -358 5826 5482 332 250 125 0 chr3 40095305 40095409 -187429169 - HAL1 LINE L1 -2322 185 69 960 127 0 25 chr3 40095474 40095632 -187428946 - AluSx SINE Alu -1 311 158 814 107 0 0 chr3 40095632 40095744 -187428834 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40096125 40096150 -187428428 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40096718 40096741 -187427837 + (TA)n Simple_repeat Simple_repeat 1 23 0 1760 140 89 0 chr3 40096895 40097210 -187427368 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40097228 40097250 -187427328 + AT_rich Low_complexity Low_complexity 1 22 0 1966 91 18 4 chr3 40097687 40097963 -187426615 + AluSg SINE Alu 17 296 -14 953 225 116 20 chr3 40098030 40098376 -187426202 - L1ME3A LINE L1 -10 6160 5782 1388 207 52 65 chr3 40098401 40098592 -187425986 - MLT1D LTR MaLR 0 505 320 2396 65 0 0 chr3 40098592 40098900 -187425678 - AluY SINE Alu -3 308 1 1388 207 52 65 chr3 40098900 40099094 -187425484 - MLT1D LTR MaLR -185 320 125 7480 151 73 43 chr3 40099094 40099308 -187425270 - L1MCa LINE L1 -4828 1598 1392 1945 148 0 0 chr3 40099308 40099606 -187424972 - AluJb SINE Alu -14 298 1 7480 151 73 43 chr3 40099606 40100855 -187423723 - L1MCa LINE L1 -5034 1392 85 2273 91 0 0 chr3 40100855 40101153 -187423425 - AluSq SINE Alu -11 302 5 7480 151 73 43 chr3 40101153 40101214 -187423364 - L1MCa LINE L1 -6341 85 27 559 187 81 16 chr3 40101216 40101339 -187423239 - MLT1D LTR MaLR -374 131 1 588 232 34 39 chr3 40101339 40101546 -187423032 - L1ME3A LINE L1 -412 5750 5545 4575 175 49 1 chr3 40101547 40102432 -187422146 + L1MB7 LINE L1 5215 6141 -43 2182 77 0 7 chr3 40102433 40102720 -187421858 + AluSc SINE Alu 1 285 -24 755 234 61 0 chr3 40102779 40102993 -187421585 - L1ME3A LINE L1 -619 5545 5319 2288 92 7 0 chr3 40103019 40103324 -187421254 - AluSp SINE Alu -6 307 1 201 39 0 0 chr3 40103351 40103377 -187421201 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 603 165 23 8 chr3 40103502 40103635 -187420943 - L1MB7 LINE L1 0 6184 6050 5152 206 54 44 chr3 40103638 40104332 -187420246 - L1ME1 LINE L1 -54 6112 5426 1731 175 3 0 chr3 40104332 40104640 -187419938 - AluJb SINE Alu -3 309 1 5152 206 54 44 chr3 40104640 40106077 -187418501 - L1ME1 LINE L1 -740 5426 3947 216 0 0 0 chr3 40106077 40106101 -187418477 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5152 206 54 44 chr3 40106101 40106324 -187418254 - L1ME1 LINE L1 -2219 3947 3728 587 231 12 75 chr3 40108336 40108509 -187416069 - MIR SINE MIR -2 260 99 233 333 0 0 chr3 40109036 40109105 -187415473 + L2 LINE L2 3202 3270 -2 1463 163 8 4 chr3 40109207 40109452 -187415126 - Tigger5 DNA MER2_type 0 2323 2078 453 171 0 0 chr3 40109439 40109509 -187415069 - Tigger5 DNA MER2_type -2241 82 13 * 1312 257 158 39 chr3 40110520 40111038 -187413540 - MLT1G1 LTR MaLR -15 580 1 870 149 53 132 chr3 40111170 40111330 -187413248 - AluJb SINE Alu -17 295 124 180 0 0 0 chr3 40111330 40111350 -187413228 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2227 69 24 0 chr3 40111352 40111641 -187412937 - AluY SINE Alu -15 296 1 870 149 53 132 chr3 40111641 40111705 -187412873 - AluJb SINE Alu -189 123 86 308 336 9 9 chr3 40111706 40111819 -187412759 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40111843 40111897 -187412681 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40111897 40112338 -187412240 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40112588 40112641 -187411937 + GC_rich Low_complexity Low_complexity 1 53 0 820 157 116 25 chr3 40114388 40114586 -187409992 + AluJo SINE Alu 87 302 -10 2151 100 0 7 chr3 40115490 40115790 -187408788 - AluSc SINE Alu -11 298 1 1611 152 10 30 chr3 40115797 40116094 -187408484 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 40116111 40116336 -187408242 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 40116370 40117019 -187407559 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 40117019 40117299 -187407279 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 40117299 40117324 -187407254 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 40117324 40117419 -187407159 + L1MB8 LINE L1 6082 6157 -21 970 243 83 99 chr3 40117821 40118247 -187406331 - MER41C LTR ERV1 0 554 138 2319 71 0 3 chr3 40118247 40118541 -187406037 + AluSc SINE Alu 1 293 -16 970 243 83 99 chr3 40118541 40118677 -187405901 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 40118986 40119071 -187405507 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 40119172 40119496 -187405082 - L2 LINE L2 0 3313 2932 1644 117 36 15 chr3 40119496 40119770 -187404808 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 40119770 40119904 -187404674 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 40119991 40120091 -187404487 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 40120637 40120660 -187403918 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 40120679 40120761 -187403817 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 40120814 40121112 -187403466 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 40121180 40121485 -187403093 - AluSc SINE Alu 0 309 1 1982 112 0 33 chr3 40122876 40123206 -187401372 - AluSx SINE Alu 0 320 1 320 64 21 0 chr3 40123326 40123373 -187401205 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1901 106 7 14 chr3 40123375 40123657 -187400921 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 40124000 40124306 -187400272 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 40124309 40124412 -187400166 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 40124481 40124603 -187399975 - L1ME4a LINE L1 -225 5896 5768 2156 112 3 3 chr3 40124930 40125242 -187399336 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 40125244 40125422 -187399156 - MIR SINE MIR -74 188 1 1479 214 117 93 chr3 40125497 40126085 -187398493 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 40126282 40126387 -187398191 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 40126389 40126562 -187398016 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 40126874 40127155 -187397423 - L1MC4a LINE L1 -1895 5913 5629 871 206 69 77 chr3 40127450 40127861 -187396717 - LTR16A1 LTR ERVL -4 453 15 797 230 31 20 chr3 40128675 40128871 -187395707 + MLT1D LTR MaLR 1 198 -307 242 241 35 23 chr3 40128994 40129081 -187395497 - L1MC4a LINE L1 -503 5618 5531 247 275 77 22 chr3 40129146 40129237 -187395341 + MIR SINE MIR 36 131 -77 2167 87 10 3 chr3 40129284 40129582 -187394996 - AluSx SINE Alu -12 300 1 361 189 54 0 chr3 40129637 40129711 -187394867 - MER116 DNA Mariner -1 79 2 295 328 91 27 chr3 40130096 40130282 -187394296 - L2 LINE L2 -5 3267 3070 3122 191 95 9 chr3 40130316 40131031 -187393547 - L1ME1 LINE L1 -5 6161 5382 237 296 0 14 chr3 40131586 40131657 -187392921 - MLT1L LTR MaLR -114 501 432 1737 161 50 7 chr3 40131786 40132085 -187392493 + AluJb SINE Alu 1 312 0 299 85 0 0 chr3 40132097 40132144 -187392434 + L1MA7 LINE L1 6200 6246 -45 1469 183 29 42 chr3 40132144 40132456 -187392122 + AluJo SINE Alu 1 308 -4 190 162 0 27 chr3 40132541 40132578 -187392000 - L2 LINE L2 -15 3298 3263 674 187 30 74 chr3 40132618 40132821 -187391757 + MIR SINE MIR 64 257 -5 311 305 40 63 chr3 40132870 40133093 -187391485 - MLT1K LTR MaLR -358 230 13 1856 161 0 20 chr3 40135550 40135855 -187388723 - AluJb SINE Alu -13 299 1 2374 74 3 3 chr3 40135906 40136202 -187388376 - AluSg SINE Alu -14 296 1 21 36 0 0 chr3 40136248 40136276 -187388302 + AT_rich Low_complexity Low_complexity 1 28 0 318 302 0 28 chr3 40137470 40137576 -187387002 - Charlie8 DNA MER1_type -2172 245 143 2299 95 0 16 chr3 40137603 40137908 -187386670 - AluSq SINE Alu -13 300 1 1943 164 0 3 chr3 40138173 40138478 -187386100 + AluJo SINE Alu 1 304 -8 296 253 12 12 chr3 40140308 40140391 -187384187 - L1ME LINE L1 -349 5772 5690 2193 115 3 13 chr3 40141188 40141502 -187383076 + AluSx SINE Alu 2 312 0 417 281 154 15 chr3 40141734 40142001 -187382577 - MLT1J LTR MaLR -5 506 203 288 221 182 0 chr3 40142072 40142149 -187382429 - MLT1J LTR MaLR -417 94 4 2028 135 13 3 chr3 40142404 40142708 -187381870 - AluY SINE Alu -4 307 1 920 112 22 8 chr3 40142708 40142842 -187381736 - AluJo SINE Alu -176 136 1 386 230 86 3 chr3 40143061 40143169 -187381409 + MER5A DNA MER1_type 1 106 -72 1236 265 120 19 chr3 40143338 40143764 -187380814 + MLT1J LTR MaLR 1 469 -42 468 280 21 28 chr3 40144433 40144576 -187380002 + MIR SINE MIR 108 249 -13 2221 104 0 7 chr3 40144586 40144875 -187379703 + AluSq SINE Alu 1 287 -26 341 288 182 33 chr3 40145113 40145596 -187378982 - L1ME4a LINE L1 -3 6118 5564 420 279 162 0 chr3 40145668 40145822 -187378756 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 40146226 40146417 -187378161 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 40147860 40147900 -187376678 + AT_rich Low_complexity Low_complexity 1 40 0 2044 142 10 0 chr3 40148022 40148317 -187376261 - AluSx SINE Alu -14 298 1 2434 74 3 0 chr3 40148328 40148625 -187375953 - AluY SINE Alu -13 298 1 472 236 0 71 chr3 40148633 40148773 -187375805 - L1MC5 LINE L1 -34 7927 7798 632 223 12 42 chr3 40148788 40148954 -187375624 - L1MB7 LINE L1 -9 6175 6015 486 0 0 0 chr3 40149408 40149462 -187375116 + (TG)n Simple_repeat Simple_repeat 1 54 0 398 282 111 6 chr3 40149704 40149885 -187374693 - L2 LINE L2 0 3313 3114 457 233 117 63 chr3 40149925 40150148 -187374430 + L1ME4a LINE L1 5880 6114 -7 686 161 109 23 chr3 40150414 40150588 -187373990 + MIR SINE MIR 8 196 -66 682 143 0 9 chr3 40150597 40150702 -187373876 + AluSq/x SINE Alu 2 105 -208 336 266 148 49 chr3 40150813 40151016 -187373562 + MIR SINE MIR 28 250 -12 599 292 56 5 chr3 40151303 40151519 -187373059 + MIR SINE MIR 36 262 0 2155 137 0 3 chr3 40152652 40152965 -187371613 + AluSq SINE Alu 1 312 -1 1605 161 0 45 chr3 40153047 40153333 -187371245 - AluJo SINE Alu -16 296 24 515 274 196 25 chr3 40153390 40153865 -187370713 + L1MC/D LINE L1 5100 5682 -828 2262 96 0 3 chr3 40153865 40154166 -187370412 + AluY SINE Alu 1 300 -11 515 274 196 25 chr3 40154166 40154264 -187370314 + L1MC/D LINE L1 5682 5762 -748 1087 159 48 19 chr3 40154274 40154481 -187370097 + MER20 DNA MER1_type 7 219 0 2350 99 0 0 chr3 40156058 40156352 -187368226 + AluSx SINE Alu 1 294 -18 2149 132 0 0 chr3 40156354 40156658 -187367920 + AluSc SINE Alu 1 304 -5 693 101 8 25 chr3 40157022 40157141 -187367437 - L1PA13 LINE L1 -1 6162 6046 1926 142 3 0 chr3 40158200 40158482 -187366096 - AluJo SINE Alu -16 296 14 840 184 6 50 chr3 40158589 40158768 -187365810 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 40158784 40158835 -187365743 + (CA)n Simple_repeat Simple_repeat 2 53 0 2102 139 3 0 chr3 40158853 40159147 -187365431 + AluSx SINE Alu 1 295 -17 1759 197 0 0 chr3 40159224 40159519 -187365059 + AluSx SINE Alu 1 295 -17 372 288 62 7 chr3 40159892 40160038 -187364540 + MIR SINE MIR 20 173 -89 319 227 15 0 chr3 40160117 40160183 -187364395 - MER116 DNA Mariner -13 67 1 2408 37 44 7 chr3 40160957 40161255 -187363323 + AluY SINE Alu 1 309 -2 5023 163 31 13 chr3 40161472 40161824 -187362754 - L1MB8 LINE L1 0 6178 5834 2027 145 0 17 chr3 40161824 40162120 -187362458 - AluJb SINE Alu -16 296 6 5023 163 31 13 chr3 40162120 40163467 -187361111 - L1MB8 LINE L1 -344 5834 4445 1051 167 0 0 chr3 40163468 40163636 -187360942 - AluJo SINE Alu -8 304 137 1548 191 41 52 chr3 40163650 40164090 -187360488 - L1MB8 LINE L1 -1717 4429 3995 191 320 13 13 chr3 40164577 40164652 -187359926 + MIR3 SINE MIR 133 207 -1 609 173 169 121 chr3 40164986 40165407 -187359171 - Charlie2 DNA MER1_type -1 2861 2421 1186 163 169 49 chr3 40165436 40165675 -187358903 - Charlie2 DNA MER1_type -634 2228 1938 2113 112 0 26 chr3 40165675 40165980 -187358598 - AluSg SINE Alu -13 297 1 1186 163 169 49 chr3 40165980 40166065 -187358513 - Charlie2 DNA MER1_type -924 1938 1865 876 242 57 41 chr3 40166088 40166406 -187358172 + MER46C DNA MER2_type 1 323 -15 920 239 43 80 chr3 40166418 40166491 -187358087 - Charlie2 DNA MER1_type -2467 315 241 2007 154 126 5 chr3 40166491 40166873 -187357705 + MSTA LTR MaLR 1 428 0 920 239 43 80 chr3 40166873 40167126 -187357452 - Charlie2 DNA MER1_type -2541 241 1 848 146 0 29 chr3 40167154 40167291 -187357287 - AluJo SINE Alu -169 133 1 2464 79 0 10 chr3 40168783 40169087 -187355491 + AluSg SINE Alu 1 301 -9 2192 121 3 0 chr3 40169167 40169472 -187355106 + AluSx SINE Alu 2 307 -5 693 101 8 25 chr3 40169836 40169955 -187354623 - L1PA13 LINE L1 -1 6162 6046 1926 142 3 0 chr3 40171015 40171297 -187353281 - AluJo SINE Alu -16 296 14 840 184 6 50 chr3 40171404 40171583 -187352995 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 40171599 40171650 -187352928 + (CA)n Simple_repeat Simple_repeat 2 53 0 2102 139 3 0 chr3 40171668 40171962 -187352616 + AluSx SINE Alu 1 295 -17 1759 197 0 0 chr3 40172039 40172334 -187352244 + AluSx SINE Alu 1 295 -17 372 288 62 7 chr3 40172707 40172853 -187351725 + MIR SINE MIR 20 173 -89 319 227 15 0 chr3 40172932 40172998 -187351580 - MER116 DNA Mariner -13 67 1 2408 37 44 7 chr3 40173772 40174070 -187350508 + AluY SINE Alu 1 309 -2 5023 163 31 13 chr3 40174287 40174639 -187349939 - L1MB8 LINE L1 0 6178 5834 2027 145 0 17 chr3 40174639 40174935 -187349643 - AluJb SINE Alu -16 296 6 5023 163 31 13 chr3 40174935 40176282 -187348296 - L1MB8 LINE L1 -344 5834 4445 1051 167 0 0 chr3 40176283 40176451 -187348127 - FRAM SINE Alu -8 168 1 7536 212 51 40 chr3 40176465 40177040 -187347538 - L1MB8 LINE L1 -1717 4429 3862 1861 179 0 10 chr3 40177040 40177352 -187347226 - AluJb SINE Alu -3 309 1 7536 212 51 40 chr3 40177352 40178113 -187346465 - L1MB8 LINE L1 -2284 3862 3111 2456 157 33 19 chr3 40178113 40178534 -187346044 + MSTB1 LTR MaLR 4 430 -2 7536 212 51 40 chr3 40178534 40179455 -187345123 - L1MB8 LINE L1 -3035 3111 2146 441 278 15 8 chr3 40181365 40181498 -187343080 + MER117 DNA MER1_type 16 149 -48 219 167 0 0 chr3 40181637 40181679 -187342899 + (TA)n Simple_repeat Simple_repeat 2 43 0 462 172 115 33 chr3 40181829 40181951 -187342627 + FLAM_A SINE Alu 1 132 -1 580 275 17 50 chr3 40182917 40183157 -187341421 + MIR SINE MIR 21 252 -10 290 309 47 27 chr3 40183680 40183829 -187340749 + MIR3 SINE MIR 31 182 -26 1800 160 6 49 chr3 40184282 40184607 -187339971 - AluJb SINE Alu -1 311 1 755 204 0 0 chr3 40184697 40184829 -187339749 + FLAM_A SINE Alu 2 133 0 1145 189 87 23 chr3 40185118 40185383 -187339195 + L1MB8 LINE L1 5897 6178 0 292 283 46 13 chr3 40185426 40185578 -187339000 + HAL1 LINE L1 2272 2428 -79 211 235 24 35 chr3 40186871 40186956 -187337622 - MIR3 SINE MIR -112 96 13 232 308 83 0 chr3 40187619 40187739 -187336839 + MIR SINE MIR 19 148 -60 203 217 29 14 chr3 40188592 40188661 -187335917 + MER5A DNA MER1_type 43 112 -77 2330 93 6 13 chr3 40188882 40189194 -187335384 + AluSq SINE Alu 1 310 -3 902 88 59 15 chr3 40189203 40189339 -187335239 + L1PA11 LINE L1 6029 6170 -4 1893 140 41 27 chr3 40189869 40190234 -187334344 + L1MB3 LINE L1 5807 6176 -7 2479 61 0 7 chr3 40190235 40190529 -187334049 - AluY SINE Alu -19 292 1 2116 152 0 0 chr3 40190556 40190866 -187333712 + AluSx SINE Alu 1 310 -2 2901 77 58 16 chr3 40192479 40192909 -187331669 - LTR7 LTR ERV1 -2 448 1 2188 104 91 14 chr3 40192909 40193273 -187331305 - HERVH LTR ERV1 0 7713 7322 1459 120 19 0 chr3 40193271 40193487 -187331091 - HERVH LTR ERV1 -1894 5819 5600 * 9152 138 30 35 chr3 40193488 40195146 -187329432 - HERVH LTR ERV1 -2564 5149 3500 927 122 20 0 chr3 40195145 40195293 -187329285 - HERVH LTR ERV1 -4423 3290 3140 * 15996 90 14 19 chr3 40195287 40198048 -187326530 - HERVH LTR ERV1 -4726 2987 1 2922 62 103 0 chr3 40198050 40198456 -187326122 - LTR7 LTR ERV1 -2 448 1 2378 81 3 31 chr3 40198600 40198922 -187325656 + AluSp SINE Alu 1 313 0 367 254 16 57 chr3 40198932 40199054 -187325524 + HAL1 LINE L1 2064 2180 -327 374 273 76 17 chr3 40199093 40199265 -187325313 - Charlie8 DNA MER1_type -2231 186 5 2345 74 3 10 chr3 40199689 40199986 -187324592 - AluSg SINE Alu -15 295 1 414 314 47 50 chr3 40200443 40200742 -187323836 + LTR16C LTR ERVL 89 386 -105 339 263 0 0 chr3 40200811 40200887 -187323691 + MERVL LTR ERVL 3712 3787 -1698 278 26 26 0 chr3 40201433 40201472 -187323106 + (TG)n Simple_repeat Simple_repeat 2 41 0 1987 101 69 7 chr3 40201698 40201975 -187322603 - AluSp SINE Alu -19 294 1 532 174 14 21 chr3 40202521 40202665 -187321913 + GA-rich Low_complexity Low_complexity 2 144 0 2175 94 7 33 chr3 40203775 40204082 -187320496 - AluY SINE Alu -12 299 1 1486 151 0 9 chr3 40204935 40205160 -187319418 - AluJb SINE Alu -4 308 86 999 122 0 0 chr3 40205541 40205672 -187318906 - AluSq/x SINE Alu -179 133 3 465 313 117 18 chr3 40206287 40206731 -187317847 + HAL1 LINE L1 1145 1632 -875 954 68 0 0 chr3 40206943 40207061 -187317517 - AluY SINE Alu -7 304 187 286 300 58 0 chr3 40207192 40207312 -187317266 + L1MC4 LINE L1 7130 7256 -786 313 298 76 0 chr3 40207416 40207547 -187317031 + L1MC5 LINE L1 7299 7439 -522 273 235 25 12 chr3 40207577 40207658 -187316920 - L1M4 LINE L1 -1805 4341 4260 454 230 95 6 chr3 40207722 40207931 -187316647 + L1ME3A LINE L1 4378 4603 -1543 900 165 6 57 chr3 40207953 40208129 -187316449 + AluJo SINE Alu 113 279 -33 473 165 0 10 chr3 40208132 40208235 -187316343 + GA-rich Low_complexity Low_complexity 3 104 0 5631 132 47 52 chr3 40208252 40208958 -187315620 + L1MA6 LINE L1 4793 5501 -799 2353 92 0 7 chr3 40208958 40209262 -187315316 + AluSc SINE Alu 1 302 -7 5631 132 47 52 chr3 40209262 40209903 -187314675 + L1MA6 LINE L1 5501 6130 -170 963 145 295 13 chr3 40209903 40210130 -187314448 + AluJb SINE Alu 4 294 -8 5631 132 47 52 chr3 40210130 40210301 -187314277 + L1MA6 LINE L1 6130 6300 0 812 162 0 106 chr3 40210603 40210782 -187313796 - FRAM SINE Alu -16 160 1 517 189 0 19 chr3 40210786 40210892 -187313686 - L1 LINE L1 -1433 4713 4610 * 618 299 45 45 chr3 40210887 40211355 -187313223 + L1ME3A LINE L1 5370 5837 -333 2193 107 3 7 chr3 40211458 40211758 -187312820 + AluSx SINE Alu 1 299 -13 2030 128 0 0 chr3 40211828 40212141 -187312437 - AluSq SINE Alu 0 313 1 342 205 232 0 chr3 40212199 40212311 -187312267 + MLT1L LTR MaLR 478 615 0 31 58 0 0 chr3 40213075 40213127 -187311451 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 40214249 40214269 -187310309 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 40215282 40215312 -187309266 + AT_rich Low_complexity Low_complexity 1 30 0 191 320 13 13 chr3 40216313 40216388 -187308190 + MIR3 SINE MIR 133 207 -1 609 173 169 121 chr3 40216722 40217143 -187307435 - Charlie2 DNA MER1_type -1 2861 2421 1186 163 169 49 chr3 40217172 40217411 -187307167 - Charlie2 DNA MER1_type -634 2228 1938 2113 112 0 26 chr3 40217411 40217716 -187306862 - AluSg SINE Alu -13 297 1 1186 163 169 49 chr3 40217716 40217801 -187306777 - Charlie2 DNA MER1_type -924 1938 1865 876 242 57 41 chr3 40217824 40218142 -187306436 + MER46C DNA MER2_type 1 323 -15 917 242 43 80 chr3 40218154 40218227 -187306351 - Charlie2 DNA MER1_type -2467 315 241 2007 154 126 5 chr3 40218227 40218609 -187305969 + MSTA LTR MaLR 1 428 0 917 242 43 80 chr3 40218609 40218862 -187305716 - Charlie2 DNA MER1_type -2541 241 1 848 146 0 29 chr3 40218890 40219027 -187305551 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr3 40219891 40219914 -187304664 + (A)n Simple_repeat Simple_repeat 1 23 0 2455 79 0 10 chr3 40220519 40220822 -187303756 + AluSg SINE Alu 1 300 -10 2349 106 0 3 chr3 40220902 40221205 -187303373 + AluSq SINE Alu 2 303 -10 23 78 0 0 chr3 40221265 40221316 -187303262 + AT_rich Low_complexity Low_complexity 1 51 0 280 279 15 0 chr3 40221361 40221429 -187303149 + MIR SINE MIR 6 74 -188 2010 97 12 0 chr3 40221532 40221790 -187302788 + AluSx SINE Alu 37 297 -15 23 0 0 0 chr3 40222346 40222369 -187302209 + AT_rich Low_complexity Low_complexity 1 23 0 305 236 0 56 chr3 40222845 40222934 -187301644 + L2 LINE L2 3230 3313 0 355 244 131 12 chr3 40223674 40223834 -187300744 - L2 LINE L2 -185 3087 2909 205 328 76 29 chr3 40224021 40224192 -187300386 - L2 LINE L2 -572 2742 2564 405 321 158 23 chr3 40224976 40225623 -187298955 - L2 LINE L2 -942 2372 1639 2463 199 102 31 chr3 40225982 40226599 -187297979 + L1MD2 LINE L1 5574 6234 -8 2108 110 7 32 chr3 40227441 40227750 -187296828 + AluSx SINE Alu 1 301 -11 916 141 0 15 chr3 40227832 40227967 -187296611 + FLAM_C SINE Alu 1 133 0 2632 42 7 7 chr3 40228636 40228944 -187295634 + AluY SINE Alu 3 310 -1 23 54 0 0 chr3 40229026 40229063 -187295515 + AT_rich Low_complexity Low_complexity 1 37 0 2490 81 0 0 chr3 40229110 40229407 -187295171 + AluSg SINE Alu 1 297 -13 240 225 232 14 chr3 40229720 40229862 -187294716 - MIR3 SINE MIR -17 191 19 2225 81 67 0 chr3 40230127 40230410 -187294168 - AluSc SINE Alu -7 302 1 212 324 0 54 chr3 40231444 40231518 -187293060 - L3 LINE CR1 -11 1566 1497 1890 108 41 20 chr3 40232445 40232740 -187291838 + AluSx SINE Alu 1 301 -11 247 271 114 29 chr3 40232864 40233004 -187291574 - L2 LINE L2 -290 2982 2831 208 163 0 41 chr3 40234393 40234442 -187290136 + (CCCCG)n Simple_repeat Simple_repeat 3 49 0 342 289 139 40 chr3 40234559 40234732 -187289846 - L2 LINE L2 -3 3310 3121 345 299 94 95 chr3 40234742 40235160 -187289418 - L2 LINE L2 -148 3165 2754 439 207 95 71 chr3 40235349 40235518 -187289060 - MIR SINE MIR -78 184 12 2304 81 0 0 chr3 40235970 40236266 -187288312 + AluSx SINE Alu 1 296 -16 2410 51 0 0 chr3 40236269 40236561 -187288017 + AluY SINE Alu 1 292 -19 339 207 72 18 chr3 40236595 40236706 -187287872 + L1MC4 LINE L1 7924 8040 -2 328 312 65 22 chr3 40236866 40237004 -187287574 - MER5A DNA MER1_type -2 187 44 25 31 0 0 chr3 40237436 40237468 -187287110 + AT_rich Low_complexity Low_complexity 1 32 0 1544 142 25 22 chr3 40237552 40237826 -187286752 - LTR43 LTR ERV1 0 602 328 572 77 13 0 chr3 40237828 40237906 -187286672 + MADE1 DNA Mariner 1 79 -1 * 2167 146 3 3 chr3 40237906 40238234 -187286344 - LTR43 LTR ERV1 -274 328 1 321 352 130 24 chr3 40238557 40239063 -187285515 - L2 LINE L2 -370 2944 2385 369 211 11 0 chr3 40239079 40239169 -187285409 - LTR37B LTR ERV1 0 468 378 1169 140 117 87 chr3 40239175 40239460 -187285118 + AluJb SINE Alu 14 306 0 355 234 89 44 chr3 40239910 40239971 -187284607 - LTR37B LTR ERV1 -79 389 332 360 0 0 0 chr3 40239971 40240011 -187284567 + (TG)n Simple_repeat Simple_repeat 2 41 0 355 234 89 44 chr3 40240011 40240107 -187284471 - LTR37B LTR ERV1 -136 332 225 275 302 32 8 chr3 40240177 40240303 -187284275 - LTR37B LTR ERV1 -270 198 70 1019 173 17 17 chr3 40240305 40240484 -187284094 - MER58A DNA MER1_type -1 223 45 1838 112 61 0 chr3 40240488 40240766 -187283812 + AluSq SINE Alu 1 295 -18 28 0 0 0 chr3 40240766 40240794 -187283784 + AT_rich Low_complexity Low_complexity 1 28 0 318 268 0 0 chr3 40240794 40240850 -187283728 - MER58A DNA MER1_type -168 56 1 1185 153 0 36 chr3 40240858 40241054 -187283524 - MER5A DNA MER1_type 0 189 1 244 211 123 0 chr3 40241056 40241113 -187283465 - LTR37B LTR ERV1 -394 74 11 203 340 30 0 chr3 40241121 40241221 -187283357 - L2 LINE L2 -940 2374 2272 1315 122 0 0 chr3 40241221 40241410 -187283168 + AluSx SINE Alu 1 189 -123 588 199 153 42 chr3 40242165 40242381 -187282197 - L1MC4a LINE L1 -1614 6194 5955 1440 235 84 59 chr3 40242399 40242859 -187281719 - L1MC4a LINE L1 -1903 5905 5427 2015 137 0 0 chr3 40242859 40243158 -187281420 - AluSx SINE Alu -13 299 1 1440 235 84 59 chr3 40243158 40243258 -187281320 - L1MC4a LINE L1 -2381 5427 5331 2321 77 3 3 chr3 40243258 40243558 -187281020 - AluSc SINE Alu -9 300 1 897 137 37 31 chr3 40243559 40243720 -187280858 - AluJo SINE Alu -31 281 120 5103 176 83 53 chr3 40243738 40244393 -187280185 + Charlie1a DNA MER1_type 49 683 -2078 912 143 0 0 chr3 40244393 40244526 -187280052 - FLAM_A SINE Alu 0 133 1 5103 176 83 53 chr3 40244526 40244709 -187279869 + Charlie1a DNA MER1_type 683 859 -1902 1730 132 23 26 chr3 40244709 40245019 -187279559 + AluJb SINE Alu 1 309 -3 5103 176 83 53 chr3 40245019 40245546 -187279032 + Charlie1a DNA MER1_type 859 1455 0 216 67 0 0 chr3 40245664 40245694 -187278884 + (TC)n Simple_repeat Simple_repeat 1 30 0 364 297 98 17 chr3 40246751 40246987 -187277591 + L1M4 LINE L1 3574 3828 -2318 1938 148 0 3 chr3 40246992 40247295 -187277283 - AluSx SINE Alu -10 302 1 829 176 0 0 chr3 40247478 40247609 -187276969 - FLAM_A SINE Alu -2 131 1 257 114 0 0 chr3 40248220 40248255 -187276323 - MER5A DNA MER1_type -1 188 154 796 177 71 0 chr3 40248296 40248437 -187276141 - MER5A DNA MER1_type -38 151 1 436 208 0 13 chr3 40248887 40248964 -187275614 - MER5A DNA MER1_type 0 189 114 1502 153 80 4 chr3 40249069 40249344 -187275234 - AluJb SINE Alu -16 296 1 868 202 0 11 chr3 40249471 40249649 -187274929 - FRAM SINE Alu 0 176 1 905 158 50 104 chr3 40249723 40249898 -187274680 - AluJo SINE Alu 0 312 152 2358 56 23 0 chr3 40249898 40250202 -187274376 - AluY SINE Alu 0 311 1 905 158 50 104 chr3 40250202 40250266 -187274312 - AluJo SINE Alu -160 152 86 308 336 9 9 chr3 40250267 40250380 -187274198 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40250404 40250458 -187274120 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40250458 40250899 -187273679 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40251149 40251202 -187273376 + GC_rich Low_complexity Low_complexity 1 53 0 813 157 117 25 chr3 40252949 40253146 -187271432 + AluJo SINE Alu 87 301 -11 1989 120 0 7 chr3 40254046 40254345 -187270233 - AluSc SINE Alu -12 297 1 1611 152 10 30 chr3 40254352 40254649 -187269929 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 40254666 40254891 -187269687 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 40254925 40255574 -187269004 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 40255574 40255854 -187268724 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 40255854 40255879 -187268699 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 40255879 40255974 -187268604 + L1MB8 LINE L1 6082 6157 -21 998 242 83 99 chr3 40256376 40256802 -187267776 - MER41C LTR ERV1 0 554 138 2328 71 0 3 chr3 40256802 40257097 -187267481 + AluSc SINE Alu 1 294 -15 998 242 83 99 chr3 40257097 40257233 -187267345 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 40257542 40257627 -187266951 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 40257728 40258052 -187266526 - L2 LINE L2 0 3313 2932 1635 116 36 18 chr3 40258052 40258327 -187266251 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 40258327 40258461 -187266117 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 40258548 40258648 -187265930 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 40259194 40259217 -187265361 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 40259236 40259318 -187265260 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 40259371 40259669 -187264909 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 40259735 40260040 -187264538 - AluSc SINE Alu 0 309 1 1997 108 0 33 chr3 40261431 40261761 -187262817 - AluSx SINE Alu 0 320 1 320 64 21 0 chr3 40261881 40261928 -187262650 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1914 103 7 14 chr3 40261930 40262212 -187262366 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 40262555 40262861 -187261717 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 40262864 40262967 -187261611 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 40263036 40263158 -187261420 - L1ME4a LINE L1 -225 5896 5768 2191 106 3 3 chr3 40263498 40263810 -187260768 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 40263812 40263990 -187260588 - MIR SINE MIR -74 188 1 1462 216 117 93 chr3 40264065 40264653 -187259925 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 40264850 40264955 -187259623 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 40264957 40265130 -187259448 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 40265442 40265723 -187258855 - L1MC4a LINE L1 -1895 5913 5629 901 206 70 75 chr3 40266018 40266428 -187258150 - LTR16A1 LTR ERVL -4 453 15 827 218 81 21 chr3 40267242 40267653 -187256925 + MLT1D LTR MaLR 1 505 0 2079 97 3 3 chr3 40268238 40268528 -187256050 - AluSc SINE Alu -17 292 3 1959 212 61 15 chr3 40268536 40269012 -187255566 - L1MC4 LINE L1 0 8042 7545 393 284 9 0 chr3 40269289 40269398 -187255180 - MIR SINE MIR -37 225 116 349 347 41 48 chr3 40269457 40269725 -187254853 + L2 LINE L2 3043 3308 -5 349 252 10 29 chr3 40270395 40270498 -187254080 - L2 LINE L2 -1 3271 3171 1843 224 130 20 chr3 40270546 40271085 -187253493 - HsTC2 DNA Tc2 -40 1858 1261 635 86 0 0 chr3 40271148 40271229 -187253349 + AluS SINE Alu 2 82 -230 249 267 40 10 chr3 40271241 40271342 -187253236 - L2 LINE L2 -253 3019 2916 2047 94 0 7 chr3 40271555 40271830 -187252748 + AluSx SINE Alu 3 275 -37 270 0 0 0 chr3 40271831 40271861 -187252717 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 254 40 75 chr3 40272253 40272337 -187252241 - L1ME LINE L1 -344 5777 5701 1192 207 14 5 chr3 40272337 40272559 -187252019 + MER58A DNA MER1_type 1 224 0 277 254 40 75 chr3 40272559 40272647 -187251931 - L1ME LINE L1 -420 5701 5611 369 249 85 79 chr3 40272920 40273085 -187251493 - MLT1J2 LTR MaLR -2 448 283 982 282 78 34 chr3 40273129 40273547 -187251031 + LTR16A LTR ERVL 1 443 -7 542 276 128 10 chr3 40274103 40274306 -187250272 - MIR SINE MIR -20 242 16 341 233 9 95 chr3 40274339 40274455 -187250123 + MER5A DNA MER1_type 5 110 -79 442 74 0 0 chr3 40274465 40274542 -187250036 + Alu SINE Alu 229 305 0 430 253 30 0 chr3 40274870 40274969 -187249609 + MIR SINE MIR 83 184 -78 336 252 65 65 chr3 40275321 40275460 -187249118 + MIR3 SINE MIR 10 148 -60 1088 135 22 0 chr3 40275515 40275693 -187248885 - AluSp SINE Alu -1 312 131 2724 31 0 0 chr3 40275693 40276011 -187248567 - AluYb8 SINE Alu 0 318 1 646 164 15 8 chr3 40276305 40276439 -187248139 - L1MB7 LINE L1 0 6184 6050 5270 206 53 43 chr3 40276442 40277136 -187247442 - L1ME1 LINE L1 -54 6112 5426 1731 175 3 0 chr3 40277136 40277444 -187247134 - AluJb SINE Alu -3 309 1 5270 206 53 43 chr3 40277444 40278881 -187245697 - L1ME1 LINE L1 -740 5426 3947 216 0 0 0 chr3 40278881 40278905 -187245673 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5270 206 53 43 chr3 40278905 40279128 -187245450 - L1ME1 LINE L1 -2219 3947 3728 587 231 12 75 chr3 40281140 40281313 -187243265 - MIR SINE MIR -2 260 99 233 333 0 0 chr3 40281840 40281909 -187242669 + L2 LINE L2 3202 3270 -2 1365 167 12 8 chr3 40282011 40282256 -187242322 - Tigger5 DNA MER2_type 0 2323 2078 453 171 0 0 chr3 40282243 40282313 -187242265 - Tigger5 DNA MER2_type -2241 82 13 * 1312 257 158 39 chr3 40283314 40283832 -187240746 - MLT1G1 LTR MaLR -15 580 1 1767 138 3 44 chr3 40283964 40284262 -187240316 - AluJb SINE Alu -17 295 10 472 244 81 0 chr3 40284355 40284488 -187240090 + MIR SINE MIR 13 155 -107 2492 87 3 0 chr3 40285188 40285497 -187239081 + AluSp SINE Alu 1 310 -3 341 288 182 33 chr3 40285712 40286195 -187238383 - L1ME4a LINE L1 -3 6118 5564 420 279 162 0 chr3 40286267 40286421 -187238157 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 40286825 40287016 -187237562 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 40288459 40288499 -187236079 + AT_rich Low_complexity Low_complexity 1 40 0 2044 142 10 0 chr3 40288621 40288916 -187235662 - AluSx SINE Alu -14 298 1 2434 74 3 0 chr3 40288927 40289224 -187235354 - AluY SINE Alu -13 298 1 472 236 0 71 chr3 40289232 40289372 -187235206 - L1MC5 LINE L1 -34 7927 7798 632 223 12 42 chr3 40289387 40289553 -187235025 - L1MB7 LINE L1 -9 6175 6015 486 0 0 0 chr3 40290008 40290062 -187234516 + (TG)n Simple_repeat Simple_repeat 1 54 0 398 282 111 6 chr3 40290304 40290485 -187234093 - L2 LINE L2 0 3313 3114 457 233 117 63 chr3 40290525 40290748 -187233830 + L1ME4a LINE L1 5880 6114 -7 686 161 109 23 chr3 40291014 40291188 -187233390 + MIR SINE MIR 8 196 -66 682 143 0 9 chr3 40291197 40291302 -187233276 + AluSq/x SINE Alu 2 105 -208 336 266 148 49 chr3 40291413 40291616 -187232962 + MIR SINE MIR 28 250 -12 599 292 56 5 chr3 40291903 40292119 -187232459 + MIR SINE MIR 36 262 0 2155 137 0 3 chr3 40293252 40293565 -187231013 + AluSq SINE Alu 1 312 -1 1605 161 0 45 chr3 40293647 40293933 -187230645 - AluJo SINE Alu -16 296 24 515 274 196 25 chr3 40293990 40294465 -187230113 + L1MC/D LINE L1 5100 5682 -828 2262 96 0 3 chr3 40294465 40294766 -187229812 + AluY SINE Alu 1 300 -11 515 274 196 25 chr3 40294766 40294864 -187229714 + L1MC/D LINE L1 5682 5762 -748 1087 159 48 19 chr3 40294874 40295081 -187229497 + MER20 DNA MER1_type 7 219 0 2350 99 0 0 chr3 40296658 40296952 -187227626 + AluSx SINE Alu 1 294 -18 2149 132 0 0 chr3 40296954 40297258 -187227320 + AluSc SINE Alu 1 304 -5 693 101 8 25 chr3 40297622 40297741 -187226837 - L1PA13 LINE L1 -1 6162 6046 1926 142 3 0 chr3 40298801 40299083 -187225495 - AluJo SINE Alu -16 296 14 840 184 6 50 chr3 40299190 40299369 -187225209 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 40299385 40299436 -187225142 + (CA)n Simple_repeat Simple_repeat 2 53 0 2102 139 3 0 chr3 40299454 40299748 -187224830 + AluSx SINE Alu 1 295 -17 1759 197 0 0 chr3 40299825 40300120 -187224458 + AluSx SINE Alu 1 295 -17 372 288 62 7 chr3 40300493 40300639 -187223939 + MIR SINE MIR 20 173 -89 319 227 15 0 chr3 40300718 40300784 -187223794 - MER116 DNA Mariner -13 67 1 2380 40 44 7 chr3 40301558 40301856 -187222722 + AluY SINE Alu 1 309 -2 5023 163 31 13 chr3 40302073 40302425 -187222153 - L1MB8 LINE L1 0 6178 5834 2027 145 0 17 chr3 40302425 40302721 -187221857 - AluJb SINE Alu -16 296 6 5023 163 31 13 chr3 40302721 40304068 -187220510 - L1MB8 LINE L1 -344 5834 4445 1051 167 0 0 chr3 40304069 40304237 -187220341 - FRAM SINE Alu -8 168 1 7536 212 51 40 chr3 40304251 40304826 -187219752 - L1MB8 LINE L1 -1717 4429 3862 1861 179 0 10 chr3 40304826 40305138 -187219440 - AluJb SINE Alu -3 309 1 7536 212 51 40 chr3 40305138 40305899 -187218679 - L1MB8 LINE L1 -2284 3862 3111 2456 157 33 19 chr3 40305899 40306320 -187218258 + MSTB1 LTR MaLR 4 430 -2 7536 212 51 40 chr3 40306320 40307241 -187217337 - L1MB8 LINE L1 -3035 3111 2146 441 278 15 8 chr3 40309151 40309284 -187215294 + MER117 DNA MER1_type 16 149 -48 219 167 0 0 chr3 40309423 40309465 -187215113 + (TA)n Simple_repeat Simple_repeat 2 43 0 462 172 115 33 chr3 40309615 40309737 -187214841 + FLAM_A SINE Alu 1 132 -1 580 275 17 50 chr3 40310705 40310945 -187213633 + MIR SINE MIR 21 252 -10 290 309 47 27 chr3 40311468 40311617 -187212961 + MIR3 SINE MIR 31 182 -26 1800 160 6 49 chr3 40312070 40312395 -187212183 - AluJb SINE Alu -1 311 1 755 204 0 0 chr3 40312485 40312617 -187211961 + FLAM_A SINE Alu 2 133 0 1145 189 87 23 chr3 40312906 40313171 -187211407 + L1MB8 LINE L1 5897 6178 0 292 283 46 13 chr3 40313214 40313366 -187211212 + HAL1 LINE L1 2272 2428 -79 211 235 24 35 chr3 40314659 40314744 -187209834 - MIR3 SINE MIR -112 96 13 232 308 83 0 chr3 40315407 40315527 -187209051 + MIR SINE MIR 19 148 -60 203 217 29 14 chr3 40316380 40316449 -187208129 + MER5A DNA MER1_type 43 112 -77 2330 93 6 13 chr3 40316670 40316982 -187207596 + AluSq SINE Alu 1 310 -3 902 88 59 15 chr3 40316991 40317127 -187207451 + L1PA11 LINE L1 6029 6170 -4 225 0 0 0 chr3 40317841 40317866 -187206712 + (A)n Simple_repeat Simple_repeat 1 25 0 2280 100 3 0 chr3 40318001 40318300 -187206278 + AluSp SINE Alu 5 304 -9 270 0 0 0 chr3 40318310 40318340 -187206238 + (T)n Simple_repeat Simple_repeat 1 30 0 553 237 141 12 chr3 40318381 40318630 -187205948 + L1M4 LINE L1 4001 4281 -1865 269 81 0 0 chr3 40318635 40318672 -187205906 + AluSx SINE Alu 1 37 -266 924 109 0 14 chr3 40318672 40318810 -187205768 - AluSg/x SINE Alu -8 304 169 2030 127 0 0 chr3 40318810 40319094 -187205484 + AluSx SINE Alu 26 309 -3 837 219 85 99 chr3 40319128 40319172 -187205406 + L1M4 LINE L1 4323 4366 -1780 2398 79 3 7 chr3 40319172 40319477 -187205101 + AluSq SINE Alu 1 304 -9 837 219 85 99 chr3 40319477 40319667 -187204911 + L1M4 LINE L1 4366 4557 -1589 2472 80 0 0 chr3 40319667 40319968 -187204610 + AluSg SINE Alu 1 301 -9 837 219 85 99 chr3 40319968 40320332 -187204246 + L1M4 LINE L1 4557 5084 -1062 1801 149 10 33 chr3 40320332 40320634 -187203944 - AluJb SINE Alu -17 295 1 837 219 85 99 chr3 40320634 40320826 -187203752 + L1M4 LINE L1 5084 5277 -869 2128 142 10 0 chr3 40320834 40321137 -187203441 + AluSx SINE Alu 1 306 -6 198 143 0 0 chr3 40321139 40321174 -187203404 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2265 122 3 0 chr3 40321317 40321628 -187202950 - AluSx SINE Alu 0 312 1 2254 100 0 10 chr3 40323055 40323354 -187201224 + AluSc SINE Alu 1 296 -13 1104 242 132 36 chr3 40323409 40323826 -187200752 - LTR16A1 LTR ERVL 0 457 1 269 149 0 21 chr3 40324082 40324129 -187200449 + MER75 DNA T2_type 469 514 0 444 256 40 88 chr3 40324183 40324410 -187200168 + HAL1 LINE L1 1881 2096 -411 22 35 0 0 chr3 40324446 40324475 -187200103 + AT_rich Low_complexity Low_complexity 1 29 0 466 281 46 78 chr3 40324543 40324760 -187199818 + LTR33A LTR ERVL 1 210 -313 1182 169 33 19 chr3 40324847 40325060 -187199518 - MER20 DNA MER1_type 0 219 4 2293 89 6 43 chr3 40325067 40325391 -187199187 + AluSx SINE Alu 1 312 0 418 287 102 0 chr3 40325495 40325711 -187198867 + HAL1 LINE L1 2270 2507 0 2061 103 31 0 chr3 40325717 40326009 -187198569 + AluY SINE Alu 1 301 -10 417 247 19 19 chr3 40326697 40326855 -187197723 + (TA)n Simple_repeat Simple_repeat 2 159 0 2220 100 19 13 chr3 40326948 40327259 -187197319 + AluSq SINE Alu 1 313 0 339 271 98 51 chr3 40327312 40327526 -187197052 - MLT1J LTR MaLR 0 511 288 301 172 0 0 chr3 40327522 40327580 -187196998 + Alu SINE Alu 243 300 -1 * 1548 197 29 0 chr3 40327832 40328133 -187196445 + AluJo SINE Alu 1 309 0 702 209 0 0 chr3 40328133 40328248 -187196330 - AluJo/FLAM SINE Alu -184 118 4 246 217 78 39 chr3 40328261 40328374 -187196204 - MLT1J LTR MaLR -310 201 47 954 200 5 25 chr3 40328378 40328578 -187196000 + L1M4 LINE L1 16 211 -6331 2667 212 68 27 chr3 40328651 40329144 -187195434 + L1M4 LINE L1 2186 2658 -3986 272 70 23 0 chr3 40329144 40329187 -187195391 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2503 62 6 3 chr3 40329187 40329508 -187195070 - L1PB1 LINE L1 -10 6141 5820 2667 212 68 27 chr3 40329508 40330015 -187194563 + L1M4 LINE L1 2657 3241 -3403 433 172 21 32 chr3 40331407 40331500 -187193078 - FLAM_A SINE Alu -16 126 35 2425 216 20 5 chr3 40331512 40332151 -187192427 + L1M4 LINE L1 3253 3901 -2743 456 339 17 0 chr3 40332529 40332703 -187191875 + L2 LINE L2 2184 2360 -954 730 202 16 0 chr3 40332726 40332855 -187191723 - FLAM_A SINE Alu -2 131 1 1401 146 0 24 chr3 40332892 40333105 -187191473 + AluJb SINE Alu 1 208 -104 2926 179 29 13 chr3 40333105 40333701 -187190877 - L1MB5 LINE L1 -217 5957 5353 654 141 0 161 chr3 40333736 40333785 -187190793 - FLAM_C SINE Alu -186 126 71 2293 76 40 3 chr3 40333785 40334086 -187190492 - AluSx SINE Alu 0 312 1 654 141 0 161 chr3 40334086 40334185 -187190393 - FLAM_C SINE Alu -241 71 2 1662 200 20 55 chr3 40334186 40334645 -187189933 - L1MB5 LINE L1 -780 5366 4924 804 134 108 13 chr3 40334801 40334958 -187189620 - L1MB8 LINE L1 0 6178 6007 6606 163 75 55 chr3 40334958 40336621 -187187957 + pTR5 LTR ERV1 743 2438 0 365 194 48 48 chr3 40336627 40336730 -187187848 - L1MB8 LINE L1 -177 6001 5899 2974 254 39 21 chr3 40336757 40337525 -187187053 - MER21B LTR ERV1 -68 795 14 414 169 0 14 chr3 40337531 40337602 -187186976 - L1MB8 LINE L1 -267 5911 5842 1779 98 4 0 chr3 40337605 40337830 -187186748 + AluSq SINE Alu 10 235 -78 672 101 0 0 chr3 40337830 40337919 -187186659 + AluY SINE Alu 194 282 -29 1201 93 0 0 chr3 40337969 40338120 -187186458 - AluSq SINE Alu -26 287 137 349 227 45 11 chr3 40338121 40338209 -187186369 + MER39 LTR ERV1 613 703 -4 1743 139 0 62 chr3 40338489 40338604 -187185974 + AluJb SINE Alu 25 146 -166 2232 110 3 3 chr3 40338604 40338905 -187185673 + AluSx SINE Alu 1 301 -11 1743 139 0 62 chr3 40338905 40339077 -187185501 + AluJb SINE Alu 146 294 -18 319 263 24 102 chr3 40339633 40339956 -187184622 + MLT1J2 LTR MaLR 116 450 0 371 274 33 26 chr3 40340518 40340671 -187183907 + HAL1b LINE L1 1187 1340 -8 2257 106 0 29 chr3 40340801 40341112 -187183466 - AluSg SINE Alu -8 302 1 645 269 42 42 chr3 40341298 40341558 -187183020 - MER102b DNA MER1_type -5 336 77 2368 88 0 3 chr3 40341565 40341859 -187182719 + AluSc SINE Alu 2 294 -15 260 194 32 0 chr3 40342228 40342290 -187182288 - MIR SINE MIR -36 226 163 3055 203 10 42 chr3 40342291 40342505 -187182073 - L1M4 LINE L1 -1055 5091 4872 2206 138 0 0 chr3 40342505 40342809 -187181769 + AluSx SINE Alu 1 304 -8 3055 203 10 42 chr3 40342809 40342915 -187181663 - L1M4 LINE L1 -1274 4872 4764 2212 82 0 34 chr3 40342915 40343231 -187181347 - AluY SINE Alu 0 306 1 3055 203 10 42 chr3 40343231 40343702 -187180876 - L1M4 LINE L1 -1382 4764 4323 324 253 137 7 chr3 40343687 40343833 -187180745 - L1M4 LINE L1 -2438 3708 3544 * 1830 151 14 0 chr3 40344057 40344335 -187180243 + AluJb SINE Alu 24 305 -7 304 285 124 29 chr3 40344638 40344775 -187179803 + MIR3 SINE MIR 36 185 -23 405 266 50 7 chr3 40344995 40345134 -187179444 + MIR SINE MIR 68 212 -50 1144 289 48 50 chr3 40345723 40346179 -187178399 - MLT1J LTR MaLR -33 478 24 492 204 232 0 chr3 40346325 40346467 -187178111 - MER5A DNA MER1_type -6 183 9 181 0 69 0 chr3 40347141 40347170 -187177408 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1458 145 40 13 chr3 40347189 40347416 -187177162 + AluSg1 SINE Alu 1 233 -76 2380 68 0 0 chr3 40347417 40347696 -187176882 + AluSq SINE Alu 19 297 -16 1827 209 36 58 chr3 40347720 40348188 -187176390 + LTR40c LTR ERVL 3 460 -5 378 239 0 11 chr3 40348205 40348293 -187176285 - MER5A DNA MER1_type -94 95 9 343 282 169 0 chr3 40348315 40348439 -187176139 + MIR3 SINE MIR 58 202 -6 601 178 20 0 chr3 40348654 40348755 -187175823 + MER94 DNA DNA 3 105 -29 1227 111 106 0 chr3 40348820 40349028 -187175550 - L1PA14 LINE L1 0 6161 5932 201 94 0 0 chr3 40349827 40349859 -187174719 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1534 170 0 24 chr3 40349861 40350149 -187174429 - AluSx SINE Alu -31 281 1 663 266 44 18 chr3 40350161 40350390 -187174188 - L1MA9 LINE L1 -38 6274 6040 360 207 99 41 chr3 40351003 40351124 -187173454 - LTR16C LTR ERVL -2 489 362 2027 111 36 0 chr3 40351178 40351458 -187173120 - AluSx SINE Alu -22 290 1 1405 198 44 26 chr3 40351458 40351797 -187172781 - L1MB7 LINE L1 -358 5826 5482 231 247 124 0 chr3 40351798 40351895 -187172683 - HAL1 LINE L1 -2322 185 77 1031 118 0 0 chr3 40351989 40352125 -187172453 - AluSx SINE Alu -19 293 158 865 107 0 0 chr3 40352125 40352237 -187172341 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40352618 40352643 -187171935 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40353211 40353234 -187171344 + (TA)n Simple_repeat Simple_repeat 2 24 0 1774 140 89 0 chr3 40353388 40353703 -187170875 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40353721 40353743 -187170835 + AT_rich Low_complexity Low_complexity 1 22 0 2083 91 18 4 chr3 40354180 40354456 -187170122 + AluSg SINE Alu 17 296 -14 961 217 118 23 chr3 40354523 40354869 -187169709 - L1ME3A LINE L1 -10 6160 5782 1359 207 52 65 chr3 40354894 40355085 -187169493 - MLT1D LTR MaLR 0 505 320 2527 65 0 0 chr3 40355085 40355393 -187169185 - AluY SINE Alu -3 308 1 1359 207 52 65 chr3 40355393 40355587 -187168991 - MLT1D LTR MaLR -185 320 125 7482 151 73 43 chr3 40355587 40355801 -187168777 - L1MCa LINE L1 -4828 1598 1392 2066 148 0 0 chr3 40355801 40356099 -187168479 - AluJb SINE Alu -14 298 1 7482 151 73 43 chr3 40356099 40357348 -187167230 - L1MCa LINE L1 -5034 1392 85 2399 91 0 0 chr3 40357348 40357646 -187166932 - AluSq SINE Alu -11 302 5 7482 151 73 43 chr3 40357646 40357707 -187166871 - L1MCa LINE L1 -6341 85 27 554 187 81 16 chr3 40357709 40357832 -187166746 - MLT1D LTR MaLR -374 131 1 598 232 34 39 chr3 40357832 40358039 -187166539 - L1ME3A LINE L1 -412 5750 5545 4609 175 49 1 chr3 40358040 40358925 -187165653 + L1MB7 LINE L1 5215 6141 -43 2364 94 0 0 chr3 40358926 40359223 -187165355 + AluY SINE Alu 1 297 -14 198 0 0 0 chr3 40359229 40359251 -187165327 + (TA)n Simple_repeat Simple_repeat 1 22 0 1212 139 0 60 chr3 40360012 40360227 -187164351 + AluJb SINE Alu 87 288 -24 1521 187 10 20 chr3 40360311 40360611 -187163967 - AluJb SINE Alu -13 299 3 2123 122 10 7 chr3 40360625 40360928 -187163650 - AluSx SINE Alu -8 304 1 184 309 32 43 chr3 40363020 40363114 -187161464 - MIR SINE MIR -121 141 49 561 244 102 43 chr3 40363123 40363581 -187160997 + MLT1H1 LTR MaLR 3 543 -12 408 195 80 44 chr3 40363943 40364056 -187160522 + L1ME4a LINE L1 5972 6088 -33 1468 122 0 108 chr3 40364417 40364713 -187159865 + AluJb SINE Alu 38 301 -11 2289 121 0 0 chr3 40364924 40365229 -187159349 - AluSq SINE Alu -8 305 1 362 269 88 31 chr3 40365243 40365436 -187159142 - L2 LINE L2 -5 3308 3105 612 258 72 16 chr3 40365446 40365683 -187158895 + MLT1G1 LTR MaLR 3 213 -377 646 210 8 0 chr3 40365692 40365811 -187158767 + FLAM_C SINE Alu 1 120 -13 1302 244 45 6 chr3 40365812 40366148 -187158430 + L1ME3 LINE L1 5784 6132 -30 2307 98 0 3 chr3 40366355 40366660 -187157918 - AluY SINE Alu -7 304 1 1831 164 3 3 chr3 40366662 40366955 -187157623 - AluSx SINE Alu -13 299 7 760 124 0 0 chr3 40366957 40367062 -187157516 - AluJo SINE Alu -173 139 35 313 188 71 24 chr3 40367389 40367474 -187157104 + MLT1J LTR MaLR 416 504 -7 427 276 43 22 chr3 40367564 40367749 -187156829 - L1MEc LINE L1 -5353 1043 855 225 361 24 0 chr3 40367900 40367983 -187156595 - LTR16C LTR ERVL -358 133 49 2482 64 7 0 chr3 40368093 40368390 -187156188 + AluSp SINE Alu 1 299 -14 295 275 18 28 chr3 40368784 40368893 -187155685 + MIR3 SINE MIR 96 203 -5 292 265 148 75 chr3 40369015 40369268 -187155310 + L1ME4a LINE L1 5608 5841 -280 2032 128 3 31 chr3 40369268 40369589 -187154989 + AluSq SINE Alu 1 312 -1 292 265 148 75 chr3 40369589 40369814 -187154764 + L1ME4a LINE L1 5841 6121 0 599 305 85 27 chr3 40370392 40370615 -187153963 + LTR16C LTR ERVL 89 324 -167 1542 153 32 62 chr3 40370615 40370923 -187153655 + AluJo SINE Alu 1 299 -13 270 310 20 41 chr3 40371579 40371776 -187152802 + L1ME3 LINE L1 4243 4435 -1711 418 298 28 33 chr3 40371786 40372001 -187152577 + L1ME3 LINE L1 5735 5948 -214 1858 151 7 0 chr3 40372299 40372573 -187152005 + AluJb SINE Alu 5 283 -29 204 40 0 0 chr3 40372573 40372598 -187151980 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 212 214 0 0 chr3 40372829 40372871 -187151707 + MIR3 SINE MIR 156 197 -11 24 32 0 0 chr3 40373328 40373359 -187151219 + AT_rich Low_complexity Low_complexity 1 31 0 2130 97 36 0 chr3 40373360 40373639 -187150939 - AluSg SINE Alu -21 289 1 850 206 60 14 chr3 40373639 40373857 -187150721 + L1MC5 LINE L1 7698 7925 -36 315 0 0 0 chr3 40374179 40374214 -187150364 + (CA)n Simple_repeat Simple_repeat 2 36 0 2263 89 0 10 chr3 40374216 40374507 -187150071 - AluSx SINE Alu -24 288 1 213 244 0 0 chr3 40374514 40374555 -187150023 - L2 LINE L2 -17 3296 3256 335 252 101 8 chr3 40374747 40374816 -187149762 + MER5A DNA MER1_type 45 106 -83 1858 151 22 26 chr3 40374816 40375127 -187149451 - AluSx SINE Alu -2 310 1 335 252 101 8 chr3 40375127 40375176 -187149402 + MER5A DNA MER1_type 106 174 -15 235 235 71 12 chr3 40375324 40375409 -187149169 - MIR SINE MIR -124 138 49 2319 99 0 0 chr3 40375563 40375855 -187148723 + AluSq SINE Alu 1 292 -21 356 177 20 7 chr3 40375871 40376018 -187148560 + (TA)n Simple_repeat Simple_repeat 2 150 0 1855 167 3 6 chr3 40377263 40377574 -187147004 + AluSq SINE Alu 4 313 0 1734 185 3 0 chr3 40377691 40377983 -187146595 - AluSx SINE Alu -17 295 3 4482 133 64 50 chr3 40378066 40379335 -187145243 - pTR5 LTR ERV1 -125 2212 6 241 313 0 48 chr3 40379625 40379708 -187144870 + L3 LINE CR1 1480 1558 -19 1511 166 6 113 chr3 40380494 40380613 -187143965 + AluJo SINE Alu 1 131 -171 262 0 53 0 chr3 40380613 40380651 -187143927 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1511 166 6 113 chr3 40380651 40380857 -187143721 + AluJo SINE Alu 131 291 -11 806 218 0 6 chr3 40380859 40381015 -187143563 + FRAM SINE Alu 1 154 -22 206 238 0 0 chr3 40381097 40381139 -187143439 + (CA)n Simple_repeat Simple_repeat 2 43 0 4261 256 66 38 chr3 40381189 40382711 -187141867 - L2 LINE L2 0 3313 1734 1915 123 39 0 chr3 40382711 40382995 -187141583 + AluSx SINE Alu 1 295 -17 4261 256 66 38 chr3 40382995 40383303 -187141275 - L2 LINE L2 -1579 1734 1436 777 237 19 14 chr3 40383303 40383518 -187141060 + HAL1 LINE L1 1431 1646 -861 791 224 141 9 chr3 40383525 40383941 -187140637 + LTR33 LTR ERVL 1 521 0 250 257 43 14 chr3 40383943 40384013 -187140565 + HAL1 LINE L1 1652 1723 -784 726 271 101 49 chr3 40384016 40384254 -187140324 + HAL1 LINE L1 1775 2036 -471 2430 96 0 0 chr3 40384254 40384566 -187140012 + AluSx SINE Alu 1 312 0 726 271 101 49 chr3 40384566 40384655 -187139923 + HAL1 LINE L1 2036 2119 -388 186 238 0 0 chr3 40384881 40384923 -187139655 + MIR SINE MIR 81 122 -140 214 114 29 0 chr3 40384952 40384987 -187139591 + L2 LINE L2 3219 3254 -18 554 172 6 0 chr3 40585277 40585384 -186939194 + L1M4 LINE L1 2357 2506 -3941 229 204 0 0 chr3 40585558 40585602 -186938976 + AluJ/monomer SINE Alu 1 44 -256 262 308 47 35 chr3 40585739 40585908 -186938670 + MARNA DNA Mariner 254 424 -162 875 167 0 0 chr3 40586064 40586196 -186938382 + FLAM_C SINE Alu 1 132 -1 668 276 83 48 chr3 40586905 40587267 -186937311 - HAL1 LINE L1 -359 2148 1800 1906 139 41 3 chr3 40587267 40587561 -186937017 - AluSx SINE Alu -7 305 1 668 276 83 48 chr3 40587561 40587649 -186936929 - HAL1 LINE L1 -707 1800 1677 1734 187 17 0 chr3 40587649 40587948 -186936630 + AluJb SINE Alu 1 304 -8 668 276 83 48 chr3 40587948 40587978 -186936600 - HAL1 LINE L1 -830 1677 1650 1886 223 94 22 chr3 40587991 40588574 -186936004 + L1M4 LINE L1 2890 3514 -2868 270 211 39 0 chr3 40588574 40588626 -186935952 + AluSg/x SINE Alu 117 170 -132 1379 193 64 24 chr3 40588628 40588924 -186935654 + AluJo SINE Alu 3 310 -2 2242 115 7 0 chr3 40589089 40589394 -186935184 + AluY SINE Alu 1 307 -4 2203 197 33 42 chr3 40589483 40589608 -186934970 + L1M4 LINE L1 3616 3741 -2641 1927 154 43 0 chr3 40589608 40589907 -186934671 + AluJb SINE Alu 1 312 0 2203 197 33 42 chr3 40589907 40590197 -186934381 + L1M4 LINE L1 3741 4027 -2355 2069 146 27 43 chr3 40590197 40590567 -186934011 - THE1B LTR MaLR 0 364 1 2203 197 33 42 chr3 40590567 40590694 -186933884 + L1M4 LINE L1 4027 4154 -2228 524 224 61 14 chr3 40590693 40590840 -186933738 + L1M4 LINE L1 5265 5418 -964 * 303 226 48 0 chr3 40590984 40591068 -186933510 + HAL1 LINE L1 2237 2324 -183 1856 143 56 0 chr3 40591765 40592051 -186932527 - AluSx SINE Alu -10 302 1 253 213 53 27 chr3 40592142 40592217 -186932361 - L1ME LINE L1 -311 5810 5734 200 211 0 0 chr3 40593497 40593535 -186931043 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 226 189 38 0 chr3 40594015 40594068 -186930510 + MER116 DNA Mariner 26 80 0 2104 133 0 0 chr3 40594303 40594597 -186929981 - AluSx SINE Alu -18 294 1 214 223 25 50 chr3 40594983 40595104 -186929474 + (TTATA)n Simple_repeat Simple_repeat 2 119 0 30 43 0 43 chr3 40595158 40595228 -186929350 + AT_rich Low_complexity Low_complexity 1 67 0 235 191 48 12 chr3 40595316 40595400 -186929178 + (TA)n Simple_repeat Simple_repeat 1 87 0 2030 126 0 0 chr3 40595507 40595784 -186928794 - AluSx SINE Alu -35 277 1 686 86 86 9 chr3 40595827 40595943 -186928635 - L1MA8 LINE L1 -52 6239 6115 1208 206 54 7 chr3 40595962 40596238 -186928340 - L1MA9 LINE L1 -35 6277 5989 498 16 0 16 chr3 40596235 40596297 -186928281 - L1MA8 LINE L1 -160 6131 6071 * 5294 112 23 0 chr3 40596692 40597594 -186926984 + L1PA12 LINE L1 5117 6033 -135 2211 116 7 0 chr3 40598418 40598721 -186925857 + AluSx SINE Alu 1 305 -7 346 325 34 10 chr3 40599182 40599331 -186925247 - MER20B DNA MER1_type 0 219 63 603 207 27 9 chr3 40600032 40600143 -186924435 - FRAM SINE Alu -66 110 1 21 57 0 0 chr3 40600216 40600251 -186924327 + AT_rich Low_complexity Low_complexity 1 35 0 1349 190 63 114 chr3 40600428 40600918 -186923660 + MER4C LTR ERV1 1 465 0 1798 139 4 0 chr3 40601241 40601545 -186923033 + AluSx SINE Alu 26 330 0 467 163 0 23 chr3 40601545 40601631 -186922947 + L1M1 LINE L1 2844 2927 -4638 6452 91 24 79 chr3 40601636 40603040 -186921538 - SVA Other Other -555 1386 431 300 317 119 20 chr3 40603515 40603717 -186920861 - MER57A LTR ERV1 -175 228 7 1624 167 21 14 chr3 40603774 40604056 -186920522 - AluSx SINE Alu -28 284 1 2478 69 0 0 chr3 40604060 40604363 -186920215 - AluY SINE Alu -8 303 1 253 119 0 0 chr3 40604376 40604418 -186920160 - MER65B LTR ERV1 -487 44 3 2435 224 55 24 chr3 40604420 40605036 -186919542 - MER65B-int LTR ERV1 0 4871 4237 415 178 10 59 chr3 40605036 40605137 -186919441 - MER65B-int LTR ERV1 -739 4132 4037 21 0 0 0 chr3 40605424 40605445 -186919133 + GC_rich Low_complexity Low_complexity 1 21 0 282 191 170 11 chr3 40606210 40606304 -186918274 + MER103 DNA DNA 57 165 -1 1031 184 237 15 chr3 40607905 40608150 -186916428 + L1MEc LINE L1 1841 2030 -4366 2119 137 0 9 chr3 40608150 40608465 -186916113 + AluSx SINE Alu 1 312 0 1031 184 237 15 chr3 40608465 40608616 -186915962 + L1MEc LINE L1 2030 2325 -4071 2211 120 0 0 chr3 40608616 40608916 -186915662 + AluSg SINE Alu 1 300 -10 1236 171 5 5 chr3 40609471 40609681 -186914897 - AluJb SINE Alu -20 292 83 2844 74 3 14 chr3 40609900 40610264 -186914314 - L1PB1 LINE L1 0 6151 5792 913 100 0 105 chr3 40610318 40610547 -186914031 - L1PB1 LINE L1 -359 5792 5588 269 208 13 39 chr3 40610842 40610919 -186913659 + CT-rich Low_complexity Low_complexity 3 77 0 604 324 66 0 chr3 40611420 40611633 -186912945 - MIR SINE MIR -14 248 22 1025 254 35 23 chr3 40611694 40612041 -186912537 + L1ME4a LINE L1 5519 5869 -252 945 182 20 15 chr3 40612450 40612648 -186911930 + L1MB8 LINE L1 5980 6178 0 226 369 70 25 chr3 40612870 40613027 -186911551 + L2 LINE L2 3107 3270 -2 2764 236 38 31 chr3 40613158 40614085 -186910493 + L1M4 LINE L1 2574 3506 -2640 374 268 62 0 chr3 40614088 40614200 -186910378 + AluSq/x SINE Alu 1 119 -184 5130 148 14 124 chr3 40614383 40614938 -186909640 + L1M2 LINE L1 1037 1464 -5385 624 118 0 0 chr3 40614938 40615023 -186909555 + AluY SINE Alu 213 297 -14 5130 148 14 124 chr3 40615023 40615668 -186908910 + L1M2 LINE L1 1464 2179 -4670 1407 176 60 89 chr3 40615802 40616096 -186908482 + MER58B DNA MER1_type 5 289 -2131 860 214 7 0 chr3 40616096 40616250 -186908328 - FRAM SINE Alu -11 155 1 1407 176 60 89 chr3 40616250 40616302 -186908276 + MER58B DNA MER1_type 289 341 0 211 384 29 43 chr3 40616317 40616455 -186908123 - MIR3 SINE MIR -72 136 1 569 288 47 41 chr3 40617690 40618034 -186906544 - L1M4 LINE L1 -2190 3956 3611 1205 272 91 35 chr3 40618046 40618506 -186906072 - MLT1J LTR MaLR -22 489 4 249 179 90 51 chr3 40618532 40618610 -186905968 - MIR SINE MIR -153 109 29 1076 196 10 5 chr3 40619116 40619315 -186905263 + AluJo SINE Alu 89 288 -24 701 172 75 0 chr3 40619439 40619573 -186905005 - MER5A DNA MER1_type -44 145 2 206 354 6 31 chr3 40619928 40620089 -186904489 + CT-rich Low_complexity Low_complexity 3 159 0 191 288 144 30 chr3 40620354 40620486 -186904092 + L2 LINE L2 3165 3311 -2 810 240 15 10 chr3 40620991 40621187 -186903391 + MIR SINE MIR 60 256 -6 304 77 39 0 chr3 40621658 40621710 -186902868 + CT-rich Low_complexity Low_complexity 4 57 0 1654 192 3 19 chr3 40621712 40622029 -186902549 - AluJb SINE Alu 0 312 1 240 388 0 0 chr3 40622029 40622109 -186902469 + L2 LINE L2 2590 2669 -645 391 237 82 0 chr3 40622134 40622231 -186902347 + MIR SINE MIR 13 117 -145 234 311 107 51 chr3 40622319 40622496 -186902082 + L2 LINE L2 2842 3028 -244 264 314 48 24 chr3 40622529 40622653 -186901925 - MER91A DNA MER1_type -25 171 45 195 42 0 0 chr3 40623770 40623794 -186900784 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 969 156 17 22 chr3 40624830 40625009 -186899569 - AluSg/x SINE Alu -14 298 121 239 229 7 91 chr3 40625009 40625212 -186899366 - AluJb SINE Alu -83 219 121 24 0 0 0 chr3 40625327 40625351 -186899227 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 40626323 40626351 -186898227 + AT_rich Low_complexity Low_complexity 1 28 0 1201 90 6 6 chr3 40626667 40626823 -186897755 + L1PA12 LINE L1 5995 6150 -18 1907 95 0 0 chr3 40626850 40627102 -186897476 - L1P4 LINE L1 -362 5812 5561 1889 134 4 4 chr3 40627105 40627380 -186897198 + AluSx SINE Alu 17 291 -21 506 335 86 34 chr3 40627915 40628240 -186896338 + L2 LINE L2 2475 2816 -498 407 282 129 18 chr3 40628244 40628414 -186896164 - MIR SINE MIR -67 195 7 443 306 48 121 chr3 40628420 40628874 -186895704 + L2 LINE L2 2851 3271 -1 365 219 113 42 chr3 40630648 40630798 -186893780 - MIR SINE MIR -60 202 44 698 198 24 8 chr3 40632528 40632654 -186891924 + MER2 DNA MER2_type 218 345 0 343 248 120 0 chr3 40632654 40632771 -186891807 - L1ME4a LINE L1 -24 6097 5967 748 118 92 33 chr3 40632798 40632950 -186891628 + L1PA5 LINE L1 5994 6154 0 218 250 18 18 chr3 40633404 40633460 -186891118 + L3 LINE CR1 1520 1575 -2 4771 124 12 12 chr3 40633813 40634552 -186890026 - L1MA3 LINE L1 -284 6021 5283 289 232 49 0 chr3 40635523 40635605 -186888973 + MLT1K LTR MaLR 148 233 -355 263 295 248 0 chr3 40635668 40635773 -186888805 - L2 LINE L2 0 3272 3142 556 178 28 9 chr3 40636375 40636482 -186888096 + AluSg/x SINE Alu 164 272 -40 281 24 49 0 chr3 40636493 40636534 -186888044 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 863 209 14 33 chr3 40637433 40637648 -186886930 + L1MA5A LINE L1 4791 5001 -1145 3112 113 10 48 chr3 40637655 40637734 -186886844 - L1PA16 LINE L1 -162 6004 5924 1943 106 85 21 chr3 40637734 40638016 -186886562 - AluSx SINE Alu -8 304 5 3112 113 10 48 chr3 40638016 40638440 -186886138 - L1PA16 LINE L1 -242 5924 5520 5068 120 12 25 chr3 40638440 40639215 -186885363 + L1MA5A LINE L1 5519 6283 -14 929 179 4 16 chr3 40639215 40639444 -186885134 - AluJb SINE Alu -17 295 3 606 164 46 59 chr3 40639481 40639633 -186884945 - MER65A-int LTR ERV1 -3225 3373 3224 * 4090 190 108 46 chr3 40639621 40640125 -186884453 - MER65A-int LTR ERV1 -3544 1327 855 2133 140 0 10 chr3 40640125 40640425 -186884153 + AluSq SINE Alu 3 301 -12 273 29 0 0 chr3 40640425 40640459 -186884119 + (TA)n Simple_repeat Simple_repeat 2 35 0 2133 140 0 10 chr3 40640459 40640472 -186884106 + AluSq SINE Alu 301 313 0 4090 190 108 46 chr3 40640472 40641110 -186883468 - MER65A-int LTR ERV1 -4016 855 115 2407 123 90 43 chr3 40641198 40641334 -186883244 - MER65A LTR ERV1 -2 443 315 2039 116 3 53 chr3 40641334 40641653 -186882925 - AluSx SINE Alu -9 303 1 2407 123 90 43 chr3 40641653 40641939 -186882639 - MER65A LTR ERV1 -130 315 1 411 134 62 103 chr3 40641940 40642037 -186882541 - L1MB7 LINE L1 -273 5911 5819 3217 70 6 70 chr3 40642037 40642510 -186882068 - L1PA6 LINE L1 -5 6149 5707 755 165 12 75 chr3 40642543 40642660 -186881918 - L1MB7 LINE L1 -447 5715 5618 2149 88 0 59 chr3 40642660 40642965 -186881613 - AluSc SINE Alu -22 287 1 755 165 12 75 chr3 40642965 40643027 -186881551 - L1MB7 LINE L1 -544 5618 5554 1515 193 115 46 chr3 40643135 40643508 -186881070 - MLT1D LTR MaLR -106 399 1 598 315 45 25 chr3 40643508 40643616 -186880962 + L2 LINE L2 2998 3102 -211 2471 78 0 7 chr3 40643616 40643925 -186880653 + AluSq SINE Alu 1 307 -6 598 315 45 25 chr3 40643925 40644102 -186880476 + L2 LINE L2 3102 3289 -24 413 285 73 55 chr3 40644464 40644629 -186879949 - MER5A DNA MER1_type -1 188 21 2524 106 39 28 chr3 40644974 40645334 -186879244 - THE1B LTR MaLR 0 364 1 2467 85 0 0 chr3 40645781 40646086 -186878492 - AluSx SINE Alu -7 305 1 1997 136 0 19 chr3 40646089 40646399 -186878179 - AluSx SINE Alu -8 304 1 453 262 286 16 chr3 40646399 40646773 -186877805 - HAL1 LINE L1 -225 2282 1808 527 299 50 70 chr3 40647244 40647485 -186877093 + MIR SINE MIR 1 236 -26 2349 70 31 0 chr3 40647602 40647889 -186876689 - AluSx SINE Alu -12 300 5 270 333 11 0 chr3 40647938 40648025 -186876553 - L2 LINE L2 -4 3309 3222 2584 156 8 34 chr3 40648045 40648356 -186876222 + L1MB2 LINE L1 5707 6003 -168 2284 108 0 0 chr3 40648356 40648653 -186875925 - AluSg SINE Alu -13 297 1 2584 156 8 34 chr3 40648653 40648817 -186875761 + L1MB2 LINE L1 6003 6170 -1 384 336 123 5 chr3 40648983 40649194 -186875384 - MIR SINE MIR -23 239 4 853 113 49 21 chr3 40649659 40649801 -186874777 - FRAM SINE Alu -11 165 20 1985 148 0 3 chr3 40649808 40650105 -186874473 - AluSx SINE Alu -16 296 1 1014 175 27 0 chr3 40650202 40650385 -186874193 - L1MB3 LINE L1 -34 6149 5962 617 144 0 0 chr3 40650385 40650475 -186874103 - 5S rRNA rRNA -31 90 1 368 187 0 13 chr3 40650475 40650550 -186874028 - L1MB3 LINE L1 -197 5974 5901 1342 182 10 76 chr3 40650930 40651232 -186873346 + AluJo SINE Alu 1 282 -30 1316 206 0 0 chr3 40651319 40651538 -186873040 - MER20 DNA MER1_type 0 219 1 191 261 65 0 chr3 40651969 40652015 -186872563 + L2 LINE L2 3223 3271 -1 875 162 0 22 chr3 40652419 40652555 -186872023 - FLAM_A SINE Alu 0 133 1 2184 107 21 0 chr3 40653299 40653589 -186870989 + AluSx SINE Alu 1 296 -16 1538 237 79 8 chr3 40653598 40653953 -186870625 - MER61C-int LTR ERV1 -887 3984 3605 357 200 371 16 chr3 40653941 40654101 -186870477 - MER61C-int LTR ERV1 -847 4089 3363 * 2786 200 66 113 chr3 40654102 40654210 -186870368 - MER61C-int LTR ERV1 -1114 4022 3911 1805 152 0 42 chr3 40654210 40654520 -186870058 + AluJb SINE Alu 3 299 -13 2786 200 66 113 chr3 40654520 40654590 -186869988 - MER61C-int LTR ERV1 -1225 3911 3839 2136 140 0 0 chr3 40654590 40654897 -186869681 + AluSx SINE Alu 1 307 -5 2786 200 66 113 chr3 40654897 40654991 -186869587 - MER61C-int LTR ERV1 -1297 3839 3742 1629 190 0 31 chr3 40654991 40655312 -186869266 + AluJo SINE Alu 1 311 -1 2786 200 66 113 chr3 40655312 40656569 -186868009 - MER61C-int LTR ERV1 -1394 3742 2492 774 157 25 69 chr3 40656647 40656851 -186867727 - MER61C-int LTR ERV1 -2868 3730 3536 262 184 0 0 chr3 40656926 40656975 -186867603 - MER61C-int LTR ERV1 -4281 2477 2429 2328 87 7 0 chr3 40657200 40657499 -186867079 + AluSg SINE Alu 1 301 -9 2432 64 3 13 chr3 40657499 40657811 -186866767 + AluY SINE Alu 1 309 -2 1858 144 3 10 chr3 40657875 40658166 -186866412 + AluSg SINE Alu 5 293 -17 998 162 0 115 chr3 40658205 40658266 -186866312 + AluJo SINE Alu 87 153 -159 2262 107 0 10 chr3 40658266 40658576 -186866002 + AluSg1 SINE Alu 1 307 -2 998 162 0 115 chr3 40658576 40658749 -186865829 + AluJo SINE Alu 153 294 -18 618 108 25 33 chr3 40658749 40658869 -186865709 + L1 LINE L1 4538 4656 -1490 2252 114 0 0 chr3 40658869 40659167 -186865411 + AluSc SINE Alu 1 298 -11 1012 202 5 28 chr3 40659168 40659386 -186865192 + L1 LINE L1 4789 5001 -1145 383 203 0 0 chr3 40659393 40659462 -186865116 - L1PA16 LINE L1 -162 6004 5936 307 278 156 0 chr3 40659895 40659985 -186864593 - L2 LINE L2 -2 3311 3208 571 330 112 4 chr3 40660180 40660413 -186864165 - L2 LINE L2 -225 3088 2831 2370 64 3 7 chr3 40660425 40660720 -186863858 - AluY SINE Alu -17 294 1 866 246 138 40 chr3 40660750 40661128 -186863450 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 40661134 40661517 -186863061 - MER61C LTR ERV1 0 434 32 11293 173 53 46 chr3 40661518 40662623 -186861955 - MER61C-int LTR ERV1 -917 5029 3933 2226 113 13 0 chr3 40662623 40662924 -186861654 - AluSg SINE Alu -5 305 1 2193 123 0 0 chr3 40662929 40663230 -186861348 - AluSx SINE Alu -9 303 3 11293 173 53 46 chr3 40663230 40664254 -186860324 - MER61C-int LTR ERV1 -2016 3930 2915 2400 53 0 7 chr3 40664254 40664568 -186860010 - AluY SINE Alu 0 312 1 11293 173 53 46 chr3 40664568 40664580 -186859998 - MER61C-int LTR ERV1 -3031 2915 2905 2369 103 0 3 chr3 40664580 40664892 -186859686 - AluY SINE Alu 0 311 1 11293 173 53 46 chr3 40664892 40664927 -186859651 - MER61C-int LTR ERV1 -3041 2905 2872 2262 129 0 0 chr3 40664927 40665237 -186859341 - AluSq SINE Alu -3 310 1 11293 173 53 46 chr3 40665237 40665758 -186858820 - MER61C-int LTR ERV1 -3074 2872 1407 2800 110 15 7 chr3 40665771 40666181 -186858397 + MER4E LTR ERV1 1 413 -366 1869 127 6 62 chr3 40666189 40666313 -186858265 - AluSq SINE Alu -7 306 177 1368 153 103 121 chr3 40666313 40666769 -186857809 - LTR7 LTR ERV1 -2 448 1 1869 127 6 62 chr3 40666769 40666968 -186857610 - AluSq SINE Alu -136 177 1 2199 92 3 10 chr3 40667010 40667305 -186857273 - AluSx SINE Alu -8 304 12 2471 95 9 3 chr3 40667305 40667643 -186856935 + MER4E LTR ERV1 427 766 0 2222 152 0 0 chr3 40667654 40667990 -186856588 - MER61C-int LTR ERV1 -4984 2553 2218 * 4810 165 31 32 chr3 40667967 40669234 -186855344 - MER61C-int LTR ERV1 -382 4835 3567 425 197 0 0 chr3 40669234 40669310 -186855268 - MADE1 DNA Mariner 0 80 5 4810 165 31 32 chr3 40669310 40669447 -186855131 - MER61C-int LTR ERV1 -1650 3567 3431 1992 154 0 10 chr3 40669447 40669740 -186854838 - AluSx SINE Alu -22 290 1 4810 165 31 32 chr3 40669740 40669906 -186854672 - MER61C-int LTR ERV1 -1786 3431 183 288 232 134 0 chr3 40669941 40670023 -186854555 - MER61C-int LTR ERV1 -6593 498 406 * 508 257 16 21 chr3 40670015 40670175 -186854403 - MER61C-int LTR ERV1 -6837 254 18 2187 163 24 29 chr3 40670191 40670320 -186854258 - MER61C LTR ERV1 0 434 306 2170 107 7 0 chr3 40670320 40670610 -186853968 + AluSp SINE Alu 1 292 -21 2187 163 24 29 chr3 40670610 40670932 -186853646 - MER61C LTR ERV1 -128 306 1 1827 203 65 3 chr3 40670946 40671315 -186853263 + LTR39 LTR ERV1 392 783 0 1471 247 14 3 chr3 40671319 40671615 -186852963 - MER57A-int LTR ERV1 -7238 299 1 2050 196 66 0 chr3 40671615 40671993 -186852585 - MER57A LTR ERV1 0 403 1 2051 101 3 14 chr3 40672009 40672331 -186852247 - AluSx SINE Alu 0 319 1 272 293 111 95 chr3 40672346 40672625 -186851953 + HAL1 LINE L1 1275 1548 -959 2113 134 7 3 chr3 40672625 40672930 -186851648 - AluSx SINE Alu -6 306 1 1655 177 10 33 chr3 40672937 40673236 -186851342 - AluJo SINE Alu -20 292 1 272 293 111 95 chr3 40673236 40673337 -186851241 + HAL1 LINE L1 1553 1669 -838 381 213 75 44 chr3 40673635 40673859 -186850719 - L1MB7 LINE L1 -16 6168 5909 980 74 40 124 chr3 40673859 40674002 -186850576 - MER65A LTR ERV1 0 445 322 2302 83 3 0 chr3 40674002 40674292 -186850286 + AluSq SINE Alu 2 292 -21 980 74 40 124 chr3 40674292 40674350 -186850228 - MER65A LTR ERV1 -123 322 261 1420 241 164 25 chr3 40674508 40675376 -186849202 + L2 LINE L2 2247 3298 -15 215 262 49 0 chr3 40675380 40675441 -186849137 + MIR SINE MIR 195 258 -4 316 286 44 24 chr3 40676719 40676856 -186847722 + MIR SINE MIR 30 167 -62 1499 175 20 44 chr3 40676932 40677229 -186847349 - AluJo SINE Alu -22 290 1 2116 106 10 14 chr3 40677494 40677786 -186846792 + AluSx SINE Alu 1 291 -21 235 283 62 18 chr3 40677796 40677909 -186846669 - L1ME LINE L1 -457 5664 5547 31 44 0 0 chr3 40677999 40678044 -186846534 + AT_rich Low_complexity Low_complexity 1 45 0 523 237 37 7 chr3 40678522 40678657 -186845921 - L1MC4 LINE L1 -139 7903 7765 731 239 12 12 chr3 40678659 40678826 -186845752 + FAM SINE Alu 1 48 -1 330 202 48 29 chr3 40678844 40678948 -186845630 - L1MC4 LINE L1 -243 7799 7694 5014 158 20 24 chr3 40678954 40679706 -186844872 - L1MB3 LINE L1 0 6183 5437 2281 113 3 0 chr3 40679706 40680015 -186844563 - AluSp SINE Alu -3 310 1 5014 158 20 24 chr3 40680015 40680348 -186844230 - L1MB3 LINE L1 -746 5437 5104 1820 183 23 13 chr3 40680348 40680742 -186843836 - L1MB3 LINE L1 -1323 4823 4426 3096 163 49 33 chr3 40680752 40681010 -186843568 + Tigger3b DNA MER2_type 1 253 -2775 1540 207 18 4 chr3 40681010 40681317 -186843261 - AluJo SINE Alu 0 311 1 3096 163 49 33 chr3 40681317 40681497 -186843081 + Tigger3b DNA MER2_type 253 429 -2599 2767 22 10 0 chr3 40681497 40681809 -186842769 - AluYb8 SINE Alu -3 315 1 3096 163 49 33 chr3 40681809 40681976 -186842602 + Tigger3b DNA MER2_type 429 618 -613 11849 176 11 44 chr3 40681985 40682719 -186841859 - L1P LINE L1 -1303 4843 4086 2179 139 0 0 chr3 40682719 40683029 -186841549 - AluSx SINE Alu -2 310 1 11849 176 11 44 chr3 40683029 40683514 -186841064 - L1P LINE L1 -2060 4086 3587 1983 119 7 17 chr3 40683514 40683808 -186840770 - AluSx SINE Alu 0 312 22 11849 176 11 44 chr3 40683808 40685112 -186839466 - L1P LINE L1 -2559 3587 2402 243 0 0 0 chr3 40685356 40685383 -186839195 + (A)n Simple_repeat Simple_repeat 1 27 0 2762 216 28 94 chr3 40685424 40685621 -186838957 + MER57A-int LTR ERV1 6127 6335 -1202 2102 130 0 3 chr3 40685621 40685913 -186838665 + AluSc SINE Alu 1 291 -18 2762 216 28 94 chr3 40685913 40686132 -186838446 + MER57A-int LTR ERV1 6335 6567 -970 1984 116 12 50 chr3 40686132 40686452 -186838126 + AluSg SINE Alu 1 308 -2 2762 216 28 94 chr3 40686452 40686464 -186838114 + MER57A-int LTR ERV1 6567 6578 -959 2310 86 0 23 chr3 40686464 40686766 -186837812 + AluSq SINE Alu 1 295 -18 2421 87 0 3 chr3 40686766 40687078 -186837500 + AluY SINE Alu 1 311 0 2762 216 28 94 chr3 40687078 40687539 -186837039 + MER57A-int LTR ERV1 6576 6960 -577 1012 181 17 73 chr3 40687552 40687784 -186836794 + MER57A-int LTR ERV1 7318 7536 -1 2145 146 92 5 chr3 40687786 40688157 -186836421 + MER57A LTR ERV1 1 403 0 1480 160 20 50 chr3 40688221 40688390 -186836188 - AluJo SINE Alu -21 291 133 2340 87 0 0 chr3 40688390 40688679 -186835899 + AluY SINE Alu 1 289 -22 1480 160 20 50 chr3 40688679 40688809 -186835769 - AluJo SINE Alu -179 133 1 1536 182 9 46 chr3 40688854 40689178 -186835400 - AluJo SINE Alu 0 312 1 221 302 17 60 chr3 40689514 40689630 -186834948 + MIR SINE MIR 36 146 -62 1354 98 31 5 chr3 40689733 40689927 -186834651 - AluSx SINE Alu -100 212 14 352 276 82 112 chr3 40690994 40691748 -186832830 - L1M2 LINE L1 -5599 1250 509 233 227 27 13 chr3 40692473 40692548 -186832030 - L1MB8 LINE L1 0 6178 6103 636 158 126 24 chr3 40694064 40694191 -186830387 + FAM SINE Alu 20 159 -26 200 200 0 71 chr3 40694303 40694388 -186830190 + T-rich Low_complexity Low_complexity 4 82 0 187 250 0 133 chr3 40694491 40694611 -186829967 - MIR3 SINE MIR -13 195 92 24 53 0 0 chr3 40694898 40694936 -186829642 + AT_rich Low_complexity Low_complexity 1 38 0 799 183 108 9 chr3 40695115 40695328 -186829250 + L1MA8 LINE L1 6056 6289 -2 1301 171 171 49 chr3 40695511 40695815 -186828763 + MER47B DNA MER2_type 1 341 -77 1023 193 10 34 chr3 40695819 40696026 -186828552 - AluJo SINE Alu -27 285 84 312 203 108 0 chr3 40696026 40696100 -186828478 + MER47B DNA MER2_type 337 418 0 674 190 154 72 chr3 40696365 40696479 -186828099 - MER58C DNA MER1_type -2209 211 108 2285 93 0 7 chr3 40696479 40696780 -186827798 + AluSc SINE Alu 4 302 -7 674 190 154 72 chr3 40696780 40696860 -186827718 - MER58C DNA MER1_type -2312 108 1 2129 95 41 3 chr3 40696878 40697173 -186827405 + AluSx SINE Alu 3 308 -4 889 221 0 0 chr3 40697533 40697696 -186826882 - FAM SINE Alu -12 163 1 2220 95 0 10 chr3 40697798 40698092 -186826486 - AluY SINE Alu -20 291 1 2310 86 0 23 chr3 40698092 40698394 -186826184 - AluSq SINE Alu -18 295 1 1978 115 12 53 chr3 40698406 40698727 -186825851 - AluSg SINE Alu -2 308 1 854 198 50 25 chr3 40698727 40698929 -186825649 - MER57-int LTR ERV1 -997 6540 6334 2162 116 0 3 chr3 40698946 40699238 -186825340 - AluSc SINE Alu -18 291 1 189 0 0 0 chr3 40699345 40699366 -186825212 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1204 151 41 0 chr3 40700583 40700801 -186823777 + L1MA8 LINE L1 6059 6285 -6 22 35 0 0 chr3 40700802 40700831 -186823747 + AT_rich Low_complexity Low_complexity 1 29 0 1718 159 20 30 chr3 40700951 40701253 -186823325 - AluJb SINE Alu -13 299 1 2263 113 0 3 chr3 40702011 40702321 -186822257 - AluSx SINE Alu -3 309 1 23 33 0 0 chr3 40702365 40702395 -186822183 + AT_rich Low_complexity Low_complexity 1 30 0 2180 120 0 0 chr3 40702555 40702855 -186821723 - AluSg SINE Alu -9 301 2 399 246 136 88 chr3 40702922 40703378 -186821200 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 40703382 40703477 -186821101 - LTR33A LTR ERVL -7 516 421 1840 134 71 0 chr3 40704683 40704966 -186819612 + AluJb SINE Alu 1 303 -9 292 214 177 102 chr3 40705399 40705614 -186818964 - L2 LINE L2 -410 2904 2674 2064 118 34 0 chr3 40706105 40706402 -186818176 - AluSx SINE Alu -5 307 1 2984 159 75 38 chr3 40706961 40707047 -186817531 + L1MB7 LINE L1 5524 5605 -579 1924 157 10 0 chr3 40707047 40707347 -186817231 + AluSx SINE Alu 1 303 -9 2984 159 75 38 chr3 40707347 40707889 -186816689 + L1MB7 LINE L1 5605 6175 -9 387 0 0 0 chr3 40708272 40708315 -186816263 + (TA)n Simple_repeat Simple_repeat 1 43 0 2204 103 7 3 chr3 40709256 40709548 -186815030 - AluSx SINE Alu -19 293 1 368 292 11 59 chr3 40710176 40710379 -186814199 + L1ME4a LINE L1 5674 5868 -253 337 226 212 14 chr3 40710453 40710599 -186813979 - MIR SINE MIR -1 261 87 334 224 230 13 chr3 40710627 40710779 -186813799 - L1ME3 LINE L1 -1 6161 5977 2261 82 7 33 chr3 40710973 40711279 -186813299 + AluSc SINE Alu 1 298 -11 196 325 38 0 chr3 40711281 40711361 -186813217 - L2 LINE L2 -779 2535 2453 * 441 315 95 42 chr3 40711360 40711719 -186812859 - L2 LINE L2 0 3313 2936 2247 153 25 3 chr3 40712217 40712584 -186811994 - L1PA12 LINE L1 -7200 381 7 2705 158 76 54 chr3 40712591 40713232 -186811346 - L1M4 LINE L1 -3105 3277 2651 1598 181 3 32 chr3 40713232 40713542 -186811036 - AluJb SINE Alu -11 301 1 2705 158 76 54 chr3 40713542 40714799 -186809779 - L1M4 LINE L1 -3731 2651 1423 2223 73 0 21 chr3 40714799 40715114 -186809464 - AluY SINE Alu 0 309 1 2705 158 76 54 chr3 40715114 40716219 -186808359 - L1M4 LINE L1 -4959 1423 18 1542 251 133 24 chr3 40716238 40717038 -186807540 - L1MC4a LINE L1 -220 7588 6586 396 0 0 0 chr3 40717038 40717082 -186807496 + (TG)n Simple_repeat Simple_repeat 2 45 0 1542 251 133 24 chr3 40717082 40717246 -186807332 - L1MC4a LINE L1 -1222 6586 6441 2068 118 28 0 chr3 40717597 40717885 -186806693 + AluSx SINE Alu 1 296 -16 321 289 70 9 chr3 40718821 40718935 -186805643 - MIR SINE MIR -77 185 65 351 262 111 29 chr3 40719741 40719954 -186804624 + L1MC5 LINE L1 7029 7249 -737 1678 159 54 4 chr3 40719957 40720233 -186804345 + AluJb SINE Alu 3 292 -20 484 244 72 17 chr3 40720346 40720526 -186804052 + L1MC5 LINE L1 7714 7903 -58 279 0 0 0 chr3 40721200 40721231 -186803347 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1909 119 4 0 chr3 40721257 40721517 -186803061 - AluSx SINE Alu -51 261 1 1344 152 5 5 chr3 40722244 40722454 -186802124 - AluJb SINE Alu -20 292 83 2941 81 3 3 chr3 40722673 40723044 -186801534 - L1PB1 LINE L1 0 6151 5781 1443 93 5 5 chr3 40723079 40723284 -186801294 - L1PB1 LINE L1 -359 5792 5588 652 224 39 11 chr3 40723393 40723572 -186801006 + L1M4 LINE L1 4992 5175 -971 2115 139 3 0 chr3 40723616 40723919 -186800659 + AluSx SINE Alu 1 304 -8 1188 148 120 4 chr3 40723933 40724264 -186800314 + L1M4 LINE L1 5164 5528 -646 1878 140 32 0 chr3 40724361 40724646 -186799932 - AluSx SINE Alu -18 294 1 203 0 0 36 chr3 40724649 40724677 -186799901 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2016 114 3 10 chr3 40724868 40724880 -186799698 - AluSg SINE Alu -15 295 284 204 67 0 0 chr3 40724880 40724910 -186799668 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2016 114 3 10 chr3 40724910 40725194 -186799384 - AluSg SINE Alu -26 284 1 180 0 0 0 chr3 40725194 40725214 -186799364 + (T)n Simple_repeat Simple_repeat 1 20 0 7873 12 0 0 chr3 40725332 40726224 -186798354 - L1HS LINE L1 0 6155 5265 22 0 0 0 chr3 40726369 40726391 -186798187 + AT_rich Low_complexity Low_complexity 1 22 0 1816 175 0 23 chr3 40726563 40726872 -186797706 + AluJo SINE Alu 1 302 -10 310 274 19 70 chr3 40726896 40727053 -186797525 - L1MC5 LINE L1 -64 7897 7749 2366 122 79 32 chr3 40727513 40727956 -186796622 - L1MB4 LINE L1 -8 6172 5709 252 242 129 0 chr3 40728107 40728239 -186796339 - L1ME4a LINE L1 -190 5931 5783 1645 119 8 4 chr3 40728390 40728625 -186795953 + AluSp SINE Alu 1 236 -77 774 232 30 0 chr3 40728838 40729002 -186795576 + L1MC5 LINE L1 6665 6833 -1128 516 203 107 74 chr3 40729007 40729278 -186795300 + L1MC5 LINE L1 6896 7175 -786 1987 126 7 0 chr3 40729282 40729567 -186795011 + AluSx SINE Alu 7 293 -19 288 129 29 14 chr3 40729567 40729586 -186794992 + (TA)n Simple_repeat Simple_repeat 2 19 -53 1551 147 16 93 chr3 40729586 40729899 -186794679 + AluJb SINE Alu 1 289 -23 288 129 29 14 chr3 40729899 40729949 -186794629 + (TA)n Simple_repeat Simple_repeat 19 72 0 1829 176 0 7 chr3 40730122 40730418 -186794160 + AluJo SINE Alu 2 295 -17 609 278 30 22 chr3 40730436 40730666 -186793912 + L1MC5 LINE L1 7301 7532 -429 2246 100 10 3 chr3 40730668 40730967 -186793611 + AluSq SINE Alu 1 301 -12 1145 201 83 11 chr3 40730980 40731258 -186793320 + L1M4 LINE L1 4696 4993 -1153 478 260 24 53 chr3 40731271 40731440 -186793138 + L1MB3 LINE L1 13 176 -6366 2315 99 0 16 chr3 40731498 40731811 -186792767 - AluSg SINE Alu -2 308 1 801 180 0 7 chr3 40731987 40732126 -186792452 - AluJo SINE Alu -169 143 6 260 366 0 0 chr3 40732149 40732250 -186792328 - L1MC4 LINE L1 -613 7429 7329 245 260 10 67 chr3 40732334 40732438 -186792140 - L1M4c LINE L1 -6286 98 1 * 351 121 0 0 chr3 40732420 40732478 -186792100 - L1M4 LINE L1 -1153 4993 4936 2826 219 89 47 chr3 40732526 40732634 -186791944 + L1MB3 LINE L1 216 318 -6354 396 0 0 0 chr3 40732634 40732678 -186791900 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2826 219 89 47 chr3 40732678 40732955 -186791623 + L1MB3 LINE L1 318 582 -6090 2508 128 0 20 chr3 40732955 40733299 -186791279 + MER1B DNA MER1_type 1 337 0 2826 219 89 47 chr3 40733299 40734178 -186790400 + L1MB3 LINE L1 582 1423 -5249 2051 145 3 0 chr3 40734178 40734489 -186790089 + AluSx SINE Alu 1 312 0 2826 219 89 47 chr3 40734489 40734696 -186789882 + L1MB3 LINE L1 1423 6314 -358 224 281 42 42 chr3 40734763 40734859 -186789719 + L2 LINE L2 3170 3265 -7 1574 138 62 49 chr3 40735280 40735605 -186788973 + L1MA7 LINE L1 5961 6289 -2 21 0 0 0 chr3 40735606 40735627 -186788951 + AT_rich Low_complexity Low_complexity 1 21 0 843 153 0 23 chr3 40736860 40736991 -186787587 + FLAM_C SINE Alu 1 128 -5 1685 166 39 7 chr3 40737582 40737866 -186786712 + AluJb SINE Alu 1 293 -19 316 338 26 26 chr3 40737974 40738128 -186786450 + MIR SINE MIR 1 154 -108 2174 119 53 61 chr3 40738216 40738257 -186786321 - THE1C LTR MaLR 0 375 335 2397 100 0 0 chr3 40738257 40738556 -186786022 + AluY SINE Alu 1 299 -12 2174 119 53 61 chr3 40738556 40738892 -186785686 - THE1C LTR MaLR -40 335 1 2417 82 0 0 chr3 40742106 40742409 -186782169 + AluY SINE Alu 1 303 -8 231 258 82 0 chr3 40742417 40742514 -186782064 - L1ME4a LINE L1 -12 6109 6005 2029 111 28 14 chr3 40742696 40742984 -186781594 - AluSx SINE Alu -20 292 1 875 162 0 22 chr3 40743728 40743864 -186780714 + FLAM_A SINE Alu 1 133 0 191 261 65 0 chr3 40744268 40744314 -186780264 - L2 LINE L2 -1 3271 3223 1316 206 0 0 chr3 40744745 40744964 -186779614 + MER20 DNA MER1_type 1 219 0 1342 182 10 76 chr3 40745051 40745353 -186779225 - AluJo SINE Alu -30 282 1 368 187 0 13 chr3 40745733 40745808 -186778770 + L1MB3 LINE L1 6399 6472 -209 617 144 0 0 chr3 40745808 40745898 -186778680 + 5S rRNA rRNA 1 90 -31 1014 175 27 0 chr3 40745898 40746081 -186778497 + L1MB3 LINE L1 6460 6647 -34 2009 145 0 3 chr3 40746178 40746475 -186778103 + AluSx SINE Alu 1 296 -16 829 120 49 21 chr3 40746482 40746624 -186777954 + FRAM SINE Alu 20 165 -11 384 336 123 5 chr3 40747089 40747300 -186777278 + MIR SINE MIR 4 239 -23 2584 156 8 34 chr3 40747466 40747630 -186776948 - L1MB2 LINE L1 -1 6170 6003 2284 108 0 0 chr3 40747630 40747927 -186776651 + AluSg SINE Alu 1 297 -13 2584 156 8 34 chr3 40747927 40748238 -186776340 - L1MB2 LINE L1 -168 6003 5707 270 333 11 0 chr3 40748258 40748345 -186776233 + L2 LINE L2 3222 3309 -4 2349 70 31 0 chr3 40748394 40748681 -186775897 + AluSx SINE Alu 5 300 -12 233 119 24 0 chr3 40749474 40749516 -186775062 + CT-rich Low_complexity Low_complexity 3 45 0 1555 187 0 28 chr3 40749521 40749804 -186774774 - AluJb SINE Alu -37 275 1 708 149 0 9 chr3 40749839 40749953 -186774625 - FLAM_A SINE Alu -2 140 28 1786 175 19 7 chr3 40750164 40750472 -186774106 - AluSx SINE Alu 0 312 1 1888 107 12 0 chr3 40750669 40750922 -186773656 + AluSx SINE Alu 1 256 -56 870 102 0 8 chr3 40751334 40751452 -186773126 + AluSq/x SINE Alu 20 136 -176 1991 114 3 26 chr3 40751452 40751760 -186772818 + AluSc SINE Alu 1 301 -8 322 286 67 0 chr3 40751872 40751991 -186772587 - L1M4 LINE L1 -845 5301 5175 1407 131 12 106 chr3 40752410 40752739 -186771839 + L1MB7 LINE L1 5717 6014 -170 428 153 27 19 chr3 40753399 40753486 -186771092 - L1M4 LINE L1 -1271 4875 4790 2252 114 0 0 chr3 40753486 40753784 -186770794 - AluSc SINE Alu -11 298 1 428 153 27 19 chr3 40753784 40753904 -186770674 - L1M4 LINE L1 -1356 4790 4538 985 166 0 115 chr3 40753904 40754077 -186770501 - AluJo SINE Alu -18 294 153 2262 107 0 10 chr3 40754077 40754387 -186770191 - AluSg1 SINE Alu -2 307 1 985 166 0 115 chr3 40754387 40754448 -186770130 - AluJo SINE Alu -159 153 87 1956 141 0 7 chr3 40754487 40754778 -186769800 - AluSg SINE Alu -17 293 5 2340 83 3 10 chr3 40754851 40755164 -186769414 - AluY SINE Alu 0 311 1 2336 87 7 0 chr3 40755164 40755464 -186769114 - AluSg SINE Alu -8 302 1 774 157 25 69 chr3 40755813 40756017 -186768561 + MER65A-int LTR ERV1 3536 3730 -2868 2786 201 87 95 chr3 40756095 40757352 -186767226 + MER65A-int LTR ERV1 2492 3758 -1178 1635 191 0 28 chr3 40757352 40757672 -186766906 - AluJo SINE Alu -1 311 1 2786 201 87 95 chr3 40757672 40757766 -186766812 + MER65A-int LTR ERV1 3758 3851 -1085 2149 137 0 0 chr3 40757766 40758073 -186766505 - AluSx SINE Alu -5 307 1 2786 201 87 95 chr3 40758073 40758143 -186766435 + MER65A-int LTR ERV1 3851 3920 -1016 1786 155 0 39 chr3 40758143 40758452 -186766126 - AluJb SINE Alu -13 299 3 2786 201 87 95 chr3 40758452 40758721 -186765857 + MER65A-int LTR ERV1 3920 4089 -847 1932 215 79 36 chr3 40758709 40759073 -186765505 + MER65A-int LTR ERV1 3605 3999 -872 * 2174 103 7 26 chr3 40759073 40759375 -186765203 - AluSx SINE Alu -16 296 1 1932 215 79 36 chr3 40759375 40759516 -186765062 + MER65A-int LTR ERV1 3999 4132 -739 2447 224 55 24 chr3 40759516 40760132 -186764446 + MER65A-int LTR ERV1 4237 4871 0 253 119 0 0 chr3 40760134 40760176 -186764402 + MER65A LTR ERV1 3 44 -401 2513 66 0 0 chr3 40760189 40760492 -186764086 + AluY SINE Alu 1 303 -8 2230 111 3 0 chr3 40760496 40760784 -186763794 + AluSx SINE Alu 1 289 -23 827 78 102 16 chr3 40760815 40760943 -186763635 + MER65A LTR ERV1 44 182 -263 1316 94 22 0 chr3 40761071 40761251 -186763327 + AluSg/x SINE Alu 110 293 -17 1860 250 105 29 chr3 40761328 40761682 -186762896 + L1M4 LINE L1 3977 4303 -1843 1462 183 66 4 chr3 40761682 40761955 -186762623 - AluJb SINE Alu -22 290 1 1860 250 105 29 chr3 40761955 40762399 -186762179 + L1M4 LINE L1 4303 4836 -1310 826 185 76 42 chr3 40762950 40763074 -186761504 - LTR56 LTR ERV1 0 445 327 2298 98 3 0 chr3 40763074 40763369 -186761209 - AluSc SINE Alu -9 300 5 826 185 76 42 chr3 40763369 40763564 -186761014 - LTR56 LTR ERV1 -118 327 141 722 209 228 5 chr3 40763674 40763885 -186760693 + MIR SINE MIR 2 259 -3 2578 37 7 0 chr3 40764257 40764554 -186760024 - AluY SINE Alu -12 299 1 23 54 0 0 chr3 40765820 40765857 -186758721 + AT_rich Low_complexity Low_complexity 1 37 0 2193 52 0 49 chr3 40767645 40767931 -186756647 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 40767947 40768246 -186756332 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 40768871 40768934 -186755644 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 40769455 40769501 -186755077 - L1PA3 LINE L1 -181 5974 5929 607 14 0 0 chr3 40769501 40769572 -186755006 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 40769888 40770192 -186754386 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 40770331 40770596 -186753982 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 40770672 40770845 -186753733 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 40771218 40771252 -186753326 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 40771685 40771887 -186752691 + MIR SINE MIR 9 213 -49 2155 112 31 0 chr3 40772134 40772420 -186752158 - AluSx SINE Alu -15 297 3 695 184 0 0 chr3 40772458 40772567 -186752011 + FLAM_C SINE Alu 2 110 -33 282 29 0 0 chr3 40772573 40772608 -186751970 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5665 217 71 33 chr3 40772953 40773240 -186751338 - L1MEc LINE L1 -2271 3944 3669 1718 187 11 0 chr3 40773240 40773523 -186751055 + AluJo SINE Alu 10 295 -17 1975 92 96 11 chr3 40773529 40773810 -186750768 + AluY SINE Alu 1 305 -6 5665 217 71 33 chr3 40773810 40773939 -186750639 - L1MEc LINE L1 -2550 3665 3542 2104 100 52 3 chr3 40773939 40774228 -186750350 - AluSq SINE Alu -10 303 1 5665 217 71 33 chr3 40774228 40775442 -186749136 - L1MEc LINE L1 -2673 3542 2376 2106 107 28 0 chr3 40775442 40775732 -186748846 - AluY SINE Alu -13 298 1 5665 217 71 33 chr3 40775732 40775883 -186748695 - L1MEc LINE L1 -3839 2376 2232 2119 137 0 9 chr3 40775883 40776198 -186748380 - AluSx SINE Alu 0 312 1 5665 217 71 33 chr3 40776198 40776443 -186748135 - L1MEc LINE L1 -3983 2232 1842 273 57 0 0 chr3 40776443 40776478 -186748100 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1865 145 0 4 chr3 40776484 40776760 -186747818 - AluSx SINE Alu -37 275 1 1619 108 29 43 chr3 40776985 40777263 -186747315 + AluSx SINE Alu 20 293 -19 4681 223 66 18 chr3 40777264 40778477 -186746101 + L1M4 LINE L1 2209 3493 -2653 2104 100 52 3 chr3 40778477 40778766 -186745812 + AluSq SINE Alu 1 303 -10 4681 223 66 18 chr3 40778766 40778882 -186745696 + L1M4 LINE L1 3493 3602 -2544 1921 93 96 11 chr3 40778896 40779176 -186745402 - AluY SINE Alu -7 304 1 784 257 135 35 chr3 40779206 40779583 -186744995 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 40779589 40779972 -186744606 - MER61C LTR ERV1 0 434 32 9047 162 49 35 chr3 40779973 40781080 -186743498 - MER41-int LTR ERV1 -917 5029 3939 2242 110 13 0 chr3 40781080 40781381 -186743197 - AluSg SINE Alu -5 305 1 2244 116 0 0 chr3 40781386 40781687 -186742891 - AluSx SINE Alu -9 303 3 9047 162 49 35 chr3 40781687 40782710 -186741868 - MER41-int LTR ERV1 -2010 3936 3214 2400 53 0 7 chr3 40782710 40783024 -186741554 - AluY SINE Alu 0 312 1 9047 162 49 35 chr3 40783024 40783035 -186741543 - MER41-int LTR ERV1 -2732 3214 3205 2158 52 0 49 chr3 40783036 40783322 -186741256 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 40783338 40783637 -186740941 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 40784136 40784199 -186740379 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 40784720 40784766 -186739812 - L1PA4 LINE L1 -181 5974 5929 607 14 0 0 chr3 40784766 40784837 -186739741 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 40785153 40785457 -186739121 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 40785596 40785861 -186738717 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 40785937 40786110 -186738468 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 40786483 40786517 -186738061 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 40786950 40787152 -186737426 + MIR SINE MIR 9 213 -49 2141 134 0 3 chr3 40787399 40787697 -186736881 - AluSx SINE Alu -15 297 1 863 178 0 67 chr3 40787697 40787877 -186736701 + MER50 LTR ERV1 566 733 -1 372 203 0 0 chr3 40787878 40787942 -186736636 - LTR39 LTR ERV1 -390 393 330 1077 180 14 23 chr3 40787942 40788159 -186736419 + AluJb SINE Alu 85 299 -13 754 126 8 63 chr3 40788161 40788288 -186736290 - LTR39 LTR ERV1 -446 337 218 1852 149 20 7 chr3 40788289 40788585 -186735993 + AluSq SINE Alu 1 300 -13 185 81 0 27 chr3 40788638 40788675 -186735903 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 336 245 73 26 chr3 40788778 40788929 -186735649 + LTR23-int LTR ERV1 853 1010 -4113 1317 172 127 15 chr3 40788929 40789196 -186735382 + AluJo SINE Alu 1 297 -15 2315 71 3 3 chr3 40789256 40789539 -186735039 + AluY SINE Alu 1 310 0 211 37 0 0 chr3 40789539 40789566 -186735012 + (CAAA)n Simple_repeat Simple_repeat 2 168 0 810 238 34 15 chr3 40789636 40789842 -186734736 + LTR23-int LTR ERV1 5825 6034 -1503 431 85 0 0 chr3 40789842 40789901 -186734677 - AluSp SINE Alu -12 301 243 2525 10 0 19 chr3 40789904 40790212 -186734366 - pTR5 LTR ERV1 0 2438 2137 376 218 36 54 chr3 40790212 40790323 -186734255 - LTR30 LTR ERV1 -80 642 375 13824 27 0 4 chr3 40790323 40792509 -186732069 - pTR5 LTR ERV1 0 8399 504 635 126 35 152 chr3 40792507 40792849 -186731729 - Harlequin LTR ERV1 -5755 1141 840 * 37439 77 2 15 chr3 40792850 40798192 -186726386 - Harlequin LTR ERV1 -1935 503 1 371 235 10 0 chr3 40798192 40798290 -186726288 - LTR30 LTR ERV1 -80 642 544 954 73 0 44 chr3 40798290 40798430 -186726148 - pTR5 LTR ERV1 -413 2025 1880 1829 107 8 0 chr3 40798430 40798672 -186725906 - AluSp SINE Alu -67 246 3 954 73 0 44 chr3 40798672 40798688 -186725890 - pTR5 LTR ERV1 -558 1880 130 674 196 153 37 chr3 40798690 40798764 -186725814 + MER58C DNA MER1_type 1 65 -2355 2513 79 0 0 chr3 40798764 40799069 -186725509 - AluSc SINE Alu -1 308 4 674 196 153 37 chr3 40799069 40799183 -186725395 + MER58C DNA MER1_type 65 211 -4 306 203 108 0 chr3 40799448 40799522 -186725056 - MER47B DNA MER2_type 0 418 337 1029 193 10 34 chr3 40799522 40799729 -186724849 + AluJo SINE Alu 84 285 -27 1292 171 171 49 chr3 40799733 40800037 -186724541 - MER47B DNA MER2_type -77 341 1 780 183 108 9 chr3 40800220 40800433 -186724145 - L1MA8 LINE L1 -2 6289 6056 25 51 0 0 chr3 40800611 40800650 -186723928 + AT_rich Low_complexity Low_complexity 1 39 0 2325 96 0 7 chr3 40800858 40801159 -186723419 + AluSx SINE Alu 1 299 -13 1084 212 165 6 chr3 40801249 40801570 -186723008 - L1MD3 LINE L1 -1 7994 7623 24 0 0 0 chr3 40801848 40801872 -186722706 + AT_rich Low_complexity Low_complexity 1 24 0 1709 152 25 22 chr3 40801902 40802178 -186722400 - AluJb SINE Alu -35 277 1 309 315 103 10 chr3 40802272 40802458 -186722120 + L2 LINE L2 1221 1429 -1885 2266 113 0 13 chr3 40802458 40802767 -186721811 - AluSg SINE Alu -4 306 2 309 315 103 10 chr3 40802767 40802783 -186721795 + L2 LINE L2 1429 1442 -1872 374 246 136 88 chr3 40802834 40803290 -186721288 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 40803294 40803389 -186721189 - LTR33A LTR ERVL -7 516 421 1852 134 71 0 chr3 40804597 40804880 -186719698 + AluJb SINE Alu 1 303 -9 235 214 177 102 chr3 40805313 40805528 -186719050 - L2 LINE L2 -410 2904 2674 2078 118 34 0 chr3 40806019 40806316 -186718262 - AluSx SINE Alu -5 307 1 2952 159 75 38 chr3 40806875 40806961 -186717617 + L1MB7 LINE L1 5524 5605 -579 1940 157 10 0 chr3 40806961 40807261 -186717317 + AluSx SINE Alu 1 303 -9 2952 159 75 38 chr3 40807261 40807803 -186716775 + L1MB7 LINE L1 5605 6175 -9 2311 98 3 0 chr3 40808155 40808450 -186716128 + AluSp SINE Alu 13 308 -5 582 182 81 7 chr3 40808480 40808628 -186715950 + L1MC/D LINE L1 5315 5473 -2335 361 269 76 7 chr3 40808633 40808778 -186715800 - L2 LINE L2 -804 2510 2356 959 128 0 8 chr3 40808778 40808911 -186715667 + AluSq/x SINE Alu 1 132 -180 2002 137 3 13 chr3 40808914 40809227 -186715351 + AluSg SINE Alu 1 310 0 669 155 0 9 chr3 40809438 40809554 -186715024 + FLAM_A SINE Alu 28 142 0 1146 221 4 33 chr3 40809587 40809859 -186714719 + AluJb SINE Alu 1 264 -48 313 350 28 11 chr3 40809978 40810155 -186714423 + CT-rich Low_complexity Low_complexity 1 180 0 27 56 0 0 chr3 40810488 40810524 -186714054 + GC_rich Low_complexity Low_complexity 1 36 0 1594 106 4 13 chr3 40810677 40810914 -186713664 - AluY SINE Alu -76 235 1 31 0 0 0 chr3 40810955 40810986 -186713592 + AT_rich Low_complexity Low_complexity 1 31 0 1955 127 10 19 chr3 40811323 40811637 -186712941 - AluY SINE Alu 0 311 1 1076 150 6 0 chr3 40812295 40812462 -186712116 - AluSx SINE Alu -5 305 138 207 235 0 0 chr3 40812494 40812545 -186712033 + (TA)n Simple_repeat Simple_repeat 2 52 0 2375 96 0 0 chr3 40812695 40812997 -186711581 - AluSx SINE Alu -10 302 1 888 135 0 15 chr3 40813000 40813133 -186711445 - AluSx SINE Alu -181 131 1 358 269 76 7 chr3 40813133 40813278 -186711300 + L2 LINE L2 2356 2510 -804 582 182 81 7 chr3 40813283 40813431 -186711147 - L1MC/D LINE L1 -2335 5473 5315 2392 97 0 7 chr3 40813461 40813771 -186710807 - AluSp SINE Alu -5 308 1 2242 102 20 10 chr3 40813790 40814094 -186710484 - AluSc SINE Alu -2 307 1 1421 224 20 92 chr3 40814097 40814427 -186710151 - L1MC/D LINE L1 -2210 3936 3584 2072 75 0 0 chr3 40814427 40814679 -186709899 + AluSx SINE Alu 38 289 -23 1421 224 20 92 chr3 40814679 40814743 -186709835 - L1MC/D LINE L1 -2562 3584 3581 2138 121 21 0 chr3 40814743 40815033 -186709545 + AluSx SINE Alu 1 296 -16 1421 224 20 92 chr3 40815033 40815128 -186709450 - L1MC/D LINE L1 -2565 3581 3481 2058 125 4 0 chr3 40817009 40817328 -186707250 - AluSx SINE Alu 0 320 1 2221 126 3 0 chr3 40817870 40818172 -186706406 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 40818978 40819012 -186705566 + AT_rich Low_complexity Low_complexity 1 34 0 496 231 19 0 chr3 40821098 40821202 -186703376 - MER5A DNA MER1_type -80 109 4 3275 247 52 40 chr3 40821629 40821817 -186702761 + L1MEc LINE L1 236 420 -5976 851 165 0 0 chr3 40821817 40821950 -186702628 + FLAM_C SINE Alu 1 133 0 3275 247 52 40 chr3 40821950 40822575 -186702003 + L1MEc LINE L1 420 1071 -5325 2112 129 3 23 chr3 40822575 40822885 -186701693 + AluSx SINE Alu 1 304 -8 3275 247 52 40 chr3 40822885 40823261 -186701317 + L1MEc LINE L1 1071 1441 -4955 929 172 0 0 chr3 40823262 40823407 -186701171 + AluSg/x SINE Alu 133 277 -35 183 80 0 0 chr3 40823407 40823432 -186701146 + (GA)n Simple_repeat Simple_repeat 2 26 0 822 52 10 0 chr3 40823697 40823794 -186700784 - AluY SINE Alu -213 98 1 541 261 119 0 chr3 40823794 40824012 -186700566 + L1MEc LINE L1 1610 1853 -4543 2318 95 0 3 chr3 40824014 40824319 -186700259 + AluSx SINE Alu 1 304 -8 305 294 67 0 chr3 40824431 40824550 -186700028 - L1M4 LINE L1 -845 5301 5175 2115 140 31 76 chr3 40824966 40825451 -186699127 + L1MB7 LINE L1 5713 6175 -9 200 119 48 24 chr3 40826776 40826818 -186697760 + T-rich Low_complexity Low_complexity 5 47 0 246 212 35 35 chr3 40826938 40827023 -186697555 - L1MC5 LINE L1 -24 7937 7853 238 141 78 0 chr3 40828288 40828352 -186696226 + CT-rich Low_complexity Low_complexity 3 71 0 290 125 42 0 chr3 40828358 40828406 -186696172 - U7 snRNA snRNA 0 63 14 246 79 0 53 chr3 40828887 40828925 -186695653 - Alu SINE Alu -264 36 1 2406 83 0 3 chr3 40829003 40829304 -186695274 - AluY SINE Alu -11 300 1 1076 150 6 0 chr3 40829962 40830129 -186694449 - AluSg/x SINE Alu -5 305 138 207 235 0 0 chr3 40830161 40830212 -186694366 + (TA)n Simple_repeat Simple_repeat 2 52 0 2363 87 13 0 chr3 40830362 40830660 -186693918 - AluSx SINE Alu -10 302 1 409 239 174 36 chr3 40831351 40831478 -186693100 - L1MC5 LINE L1 -37 7924 7816 2153 136 0 3 chr3 40831478 40831779 -186692799 - AluSx SINE Alu -12 300 1 409 239 174 36 chr3 40831779 40831927 -186692651 - L1MC5 LINE L1 -145 7816 7611 194 156 22 0 chr3 40834143 40834188 -186690390 + CT-rich Low_complexity Low_complexity 3 48 0 25 0 0 0 chr3 40835004 40835029 -186689549 + AT_rich Low_complexity Low_complexity 1 25 0 514 227 47 31 chr3 40836308 40836436 -186688142 - FLAM_A SINE Alu -12 130 1 584 159 0 37 chr3 40836789 40836896 -186687682 - AluJo SINE Alu -17 295 193 687 171 0 8 chr3 40836905 40837022 -186687556 - AluJo SINE Alu -186 116 1 1348 168 226 125 chr3 40837024 40837895 -186686683 - Charlie2 DNA MER1_type -36 2826 1868 967 194 17 6 chr3 40837899 40838079 -186686499 - AluJb SINE Alu -11 301 120 2373 85 0 3 chr3 40838140 40838435 -186686143 - AluSg SINE Alu -16 294 1 753 133 0 108 chr3 40838443 40838601 -186685977 - FLAM_C SINE Alu -1 142 2 289 162 297 0 chr3 40838610 40838684 -186685894 - Charlie2 DNA MER1_type -2504 278 183 588 102 19 19 chr3 40838960 40839068 -186685510 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 324 289 31 23 chr3 40840774 40840902 -186683676 - L2 LINE L2 -26 3287 3159 1124 177 27 69 chr3 40841649 40842099 -186682479 - L1MA4A LINE L1 -25 6278 5787 377 284 117 22 chr3 40842416 40842638 -186681940 - L1MD2 LINE L1 0 6359 6117 * 1417 183 244 21 chr3 40842634 40843114 -186681464 - L1MD2 LINE L1 0 6359 5773 416 208 104 45 chr3 40844432 40844586 -186679992 - L1MC5 LINE L1 -55 7906 7744 300 311 49 33 chr3 40844936 40845058 -186679520 + MIR3 SINE MIR 56 179 -29 276 100 0 0 chr3 40846757 40846797 -186677781 + (T)n Simple_repeat Simple_repeat 1 40 0 764 202 40 83 chr3 40847553 40847781 -186676797 - MER58A DNA MER1_type -6 218 1 275 162 0 44 chr3 40848129 40848197 -186676381 - L1M2 LINE L1 -463 5658 5609 1672 161 48 17 chr3 40848204 40848321 -186676257 + AluJb SINE Alu 3 115 -197 372 22 0 0 chr3 40848321 40848366 -186676212 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1672 161 48 17 chr3 40848366 40848539 -186676039 + AluJb SINE Alu 115 302 -10 446 272 69 6 chr3 40848597 40848770 -186675808 - L1MB7 LINE L1 0 6184 6001 357 316 141 51 chr3 40850206 40850847 -186673731 - L2 LINE L2 -4 3309 2583 647 252 122 14 chr3 40850981 40851195 -186673383 - L2 LINE L2 -976 2338 2102 279 0 0 0 chr3 40854397 40854428 -186670150 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2522 62 0 7 chr3 40854461 40854767 -186669811 - AluY SINE Alu -7 304 1 2014 130 0 31 chr3 40854911 40855234 -186669344 - AluSq SINE Alu 0 313 1 2103 68 43 7 chr3 40857511 40857791 -186666787 - AluSg SINE Alu -16 294 5 205 339 18 36 chr3 40857843 40857955 -186666623 + MER5B DNA MER1_type 69 178 0 2045 137 0 7 chr3 40857985 40858277 -186666301 - AluSx SINE Alu -22 290 1 789 137 150 7 chr3 40858640 40858793 -186665785 + MSTD LTR MaLR 222 396 0 294 179 51 3 chr3 40859771 40859852 -186664726 + L1ME3A LINE L1 5457 5538 -628 679 215 236 41 chr3 40859874 40860218 -186664360 + L1ME3A LINE L1 5656 6066 -104 2050 89 79 10 chr3 40860897 40861189 -186663389 - AluSp SINE Alu -1 312 1 274 289 66 0 chr3 40861564 40861640 -186662938 - MIR SINE MIR -88 174 94 2246 89 10 10 chr3 40861979 40862281 -186662297 - AluSp SINE Alu -11 302 1 2221 102 20 10 chr3 40862300 40862604 -186661974 - AluSc SINE Alu -2 307 1 1132 230 13 95 chr3 40862607 40862937 -186661641 - L1M4 LINE L1 -2210 3936 3580 2042 75 0 0 chr3 40862937 40863189 -186661389 + AluSx SINE Alu 38 289 -23 1132 230 13 95 chr3 40863189 40863253 -186661325 - L1M4 LINE L1 -2566 3580 3584 2114 124 21 0 chr3 40863253 40863543 -186661035 + AluSx SINE Alu 1 296 -16 1132 230 13 95 chr3 40863543 40863620 -186660958 - L1M4 LINE L1 -2561 3585 3503 2035 125 4 0 chr3 40865520 40865839 -186658739 - AluSx SINE Alu 0 320 1 2219 126 3 0 chr3 40866381 40866683 -186657895 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 40867489 40867523 -186657055 + AT_rich Low_complexity Low_complexity 1 34 0 545 224 160 19 chr3 40869557 40869713 -186654865 - MER5A DNA MER1_type -8 181 4 187 386 68 15 chr3 40869952 40870084 -186654494 - MIR3 SINE MIR -58 150 12 2950 244 49 45 chr3 40870149 40870328 -186654250 + L1MEc LINE L1 242 419 -5977 851 149 0 0 chr3 40870328 40870449 -186654129 + FLAM_C SINE Alu 1 121 -12 2950 244 49 45 chr3 40870449 40871087 -186653491 + L1MEc LINE L1 419 1068 -5328 1997 133 10 23 chr3 40871087 40871395 -186653183 + AluSx SINE Alu 1 304 -8 2950 244 49 45 chr3 40871395 40871771 -186652807 + L1MEc LINE L1 1068 1441 -4955 918 172 0 0 chr3 40871772 40871917 -186652661 + AluSg/x SINE Alu 131 275 -35 325 344 38 8 chr3 40871939 40872070 -186652508 + HAL1 LINE L1 1413 1547 -960 1406 98 0 0 chr3 40872201 40872374 -186652204 - AluSq SINE Alu -140 173 1 1333 186 74 61 chr3 40872522 40872995 -186651583 - L1MC5 LINE L1 -439 7522 7044 2218 121 0 13 chr3 40872999 40873312 -186651266 - AluSx SINE Alu -3 309 1 195 42 0 0 chr3 40873319 40873343 -186651235 + (T)n Simple_repeat Simple_repeat 1 24 0 671 267 85 8 chr3 40873361 40873619 -186650959 - L1MC4 LINE L1 -1064 6978 6701 5752 213 18 30 chr3 40873636 40874198 -186650380 - L1ME3 LINE L1 -1 6161 5594 1870 161 9 6 chr3 40874198 40874520 -186650058 - L1PA15 LINE L1 0 6165 5843 5752 213 18 30 chr3 40874520 40875489 -186649089 - L1ME3 LINE L1 -568 5594 4660 2103 145 0 0 chr3 40875489 40875792 -186648786 - AluSx SINE Alu -9 303 1 5752 213 18 30 chr3 40875792 40876322 -186648256 - L1ME3 LINE L1 -1502 4660 4125 1500 266 112 28 chr3 40876324 40876691 -186647887 - L1ME LINE L1 -573 5580 5245 2177 84 3 3 chr3 40876691 40876999 -186647579 - AluSx SINE Alu 0 308 1 2130 132 0 0 chr3 40877006 40877295 -186647283 - AluSc SINE Alu -18 291 3 1500 266 112 28 chr3 40877295 40878041 -186646537 - L1ME LINE L1 -913 5240 4364 244 135 0 0 chr3 40878065 40878102 -186646476 - Alu SINE Alu -13 289 253 433 194 76 21 chr3 40878102 40878246 -186646332 - L1ME LINE L1 -4109 2201 2050 503 114 0 0 chr3 40878370 40878440 -186646138 - AluJ/FRAM SINE Alu -18 294 225 797 269 162 41 chr3 40878485 40878800 -186645778 - L1ME LINE L1 -4501 1809 1534 1667 165 0 66 chr3 40878800 40879123 -186645455 - AluJb SINE Alu 0 303 1 797 269 162 41 chr3 40879123 40879787 -186644791 - L1ME LINE L1 -4776 1534 710 2728 174 37 7 chr3 40880726 40881039 -186643539 - L1MB5 LINE L1 -67 6107 5770 1452 204 94 3 chr3 40881039 40881357 -186643221 + MER7A DNA MER2_type 1 345 -1 2728 174 37 7 chr3 40881357 40881582 -186642996 - L1MB5 LINE L1 -404 5770 5553 274 233 89 4 chr3 40881585 40881728 -186642850 - L1MCa LINE L1 -4601 1528 1319 356 290 69 40 chr3 40881865 40882141 -186642437 - L1MCa LINE L1 -4881 1238 955 228 367 14 14 chr3 40882216 40882355 -186642223 - L1ME LINE L1 -5453 666 528 227 181 67 19 chr3 40882884 40882989 -186641589 + (TA)n Simple_repeat Simple_repeat 2 111 0 348 43 0 0 chr3 40882990 40883036 -186641542 + (TG)n Simple_repeat Simple_repeat 1 46 0 1969 141 0 4 chr3 40883036 40883313 -186641265 - AluSx SINE Alu -33 279 4 6492 146 16 51 chr3 40883315 40883625 -186640953 - L1MA4 LINE L1 -45 6255 5936 1593 206 3 3 chr3 40883625 40883921 -186640657 - AluJb SINE Alu -16 296 1 6492 146 16 51 chr3 40883921 40883946 -186640632 - L1MA4 LINE L1 -364 5936 5912 1429 160 80 23 chr3 40883946 40884208 -186640370 - AluJo SINE Alu -31 281 5 6492 146 16 51 chr3 40884208 40885087 -186639491 - L1MA4 LINE L1 -388 5912 5004 363 44 0 0 chr3 40885087 40885132 -186639446 + (CA)n Simple_repeat Simple_repeat 2 46 0 6492 146 16 51 chr3 40885132 40886165 -186638413 - L1MA4 LINE L1 -1296 5004 4052 638 220 21 0 chr3 40886160 40886346 -186638232 - L1MA4 LINE L1 -2704 3442 3253 * 261 299 26 43 chr3 40886635 40886752 -186637826 + MIR SINE MIR 73 187 -75 1038 182 6 0 chr3 40887481 40887651 -186636927 - AluSx SINE Alu -141 171 1 1990 224 52 12 chr3 40887653 40888234 -186636344 - L1M4 LINE L1 -844 5302 4699 741 194 0 8 chr3 40888286 40888420 -186636158 - FLAM_A SINE Alu 0 133 1 680 251 21 8 chr3 40888454 40888652 -186635926 - L1MC/D LINE L1 -2125 5660 5458 * 3432 240 28 47 chr3 40888626 40888980 -186635598 - L1M4 LINE L1 -1542 4604 4245 2280 100 7 3 chr3 40888980 40889281 -186635297 - AluSx SINE Alu -10 302 1 3432 240 28 47 chr3 40889281 40889529 -186635049 - L1M4 LINE L1 -1901 4245 3994 2081 129 0 10 chr3 40889529 40889831 -186634747 + AluSx SINE Alu 1 299 -13 3432 240 28 47 chr3 40889831 40890492 -186634086 - L1M4 LINE L1 -2152 3994 3365 * 5664 162 23 14 chr3 40890490 40891554 -186633024 + L1MA2 LINE L1 3476 4548 -1598 499 195 0 0 chr3 40891556 40891633 -186632945 - AluSp/q SINE Alu -38 275 199 4823 112 16 8 chr3 40891634 40892903 -186631675 + L1MA2 LINE L1 4533 5814 -490 3142 105 33 12 chr3 40892943 40893430 -186631148 + L1MA2 LINE L1 5804 6300 -4 569 270 84 9 chr3 40893431 40893657 -186630921 - L1M4 LINE L1 -2763 3383 3141 1234 156 74 33 chr3 40893659 40893927 -186630651 - AluJo SINE Alu 0 312 45 1819 197 70 29 chr3 40893928 40894010 -186630568 - L1M4 LINE L1 -3015 3131 3054 2340 100 7 3 chr3 40894010 40894319 -186630259 - AluSq SINE Alu -3 310 1 1819 197 70 29 chr3 40894319 40894718 -186629860 - L1M4 LINE L1 -3092 3054 2630 484 225 39 16 chr3 40894726 40894855 -186629723 - L1M4 LINE L1 -2392 3754 3623 513 155 21 113 chr3 40894856 40894998 -186629580 + MLT1D LTR MaLR 1 129 -376 559 203 273 0 chr3 40895046 40895189 -186629389 + MLT1D LTR MaLR 324 505 0 413 284 119 11 chr3 40895197 40895373 -186629205 - L1M4 LINE L1 -2532 3614 3420 505 248 95 9 chr3 40895384 40895594 -186628984 - L1M4 LINE L1 -2831 3315 3088 527 274 169 32 chr3 40895990 40896362 -186628216 - L1M4 LINE L1 -1592 4554 4132 2171 190 94 34 chr3 40896398 40897013 -186627565 - Zaphod DNA AcHobo -5 4026 3375 26 118 0 0 chr3 40898239 40898273 -186626305 + GC_rich Low_complexity Low_complexity 1 34 0 201 39 0 0 chr3 40898527 40898553 -186626025 + (A)n Simple_repeat Simple_repeat 1 26 0 889 221 0 0 chr3 40898918 40899081 -186625497 - FAM SINE Alu -12 163 1 1996 129 0 20 chr3 40899183 40899477 -186625101 - AluSg SINE Alu -20 290 3 675 173 0 9 chr3 40899515 40899625 -186624953 + FLAM_C SINE Alu 2 110 -33 318 26 0 0 chr3 40899631 40899670 -186624908 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 926 263 14 11 chr3 40900016 40900294 -186624284 - L1M4 LINE L1 -2271 3875 3597 1590 157 19 4 chr3 40900303 40900564 -186624014 + AluJo SINE Alu 10 274 -38 216 97 0 0 chr3 40900575 40900606 -186623972 + (TAA)n Simple_repeat Simple_repeat 3 33 0 310 169 405 14 chr3 40900606 40900754 -186623824 + L1MEc LINE L1 1842 2047 -4349 371 283 11 59 chr3 40900833 40901097 -186623481 + CT-rich Low_complexity Low_complexity 1 251 0 3364 210 30 13 chr3 40901242 40901334 -186623244 - L1MC2 LINE L1 -278 6066 5977 1506 181 27 24 chr3 40901334 40901627 -186622951 - AluJo SINE Alu -18 294 1 3364 210 30 13 chr3 40901627 40902292 -186622286 - L1MC2 LINE L1 -367 5977 5296 489 188 177 100 chr3 40902525 40902686 -186621892 - MSTA LTR MaLR -49 379 232 2206 91 0 34 chr3 40902686 40902983 -186621595 - AluSc SINE Alu -20 289 3 489 188 177 100 chr3 40902983 40903093 -186621485 - MSTA LTR MaLR -196 232 2 19964 100 23 5 chr3 41003544 41006349 -186518229 - L1P LINE L1 -3287 2859 5 201 262 184 39 chr3 41006764 41006867 -186517711 + MIR3 SINE MIR 85 202 -6 260 324 73 39 chr3 41007116 41007295 -186517283 - MIR3 SINE MIR -21 187 3 260 273 57 23 chr3 41007783 41007871 -186516707 - MIR SINE MIR -109 153 63 225 94 0 0 chr3 41009477 41009509 -186515069 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 315 0 0 0 chr3 41009816 41009851 -186514727 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 212 182 200 0 chr3 41010320 41010375 -186514203 + L2 LINE L2 3245 3310 -3 467 287 18 30 chr3 41010504 41010668 -186513910 + MIR SINE MIR 98 259 -3 430 302 62 19 chr3 41010716 41010904 -186513674 + MIR SINE MIR 7 199 -63 633 107 0 58 chr3 41010930 41011033 -186513545 + MER4A LTR ERV1 1 97 -567 * 1727 129 174 74 chr3 41011030 41011393 -186513185 + MER4A LTR ERV1 257 655 -9 1402 172 0 22 chr3 41011393 41011661 -186512917 + AluJo SINE Alu 11 272 -40 299 35 23 92 chr3 41011824 41011911 -186512667 + (CGGGGG)n Simple_repeat Simple_repeat 3 83 0 212 164 14 41 chr3 41011959 41012032 -186512546 + (CGGG)n Simple_repeat Simple_repeat 4 74 0 231 88 0 0 chr3 41012039 41012073 -186512505 + (G)n Simple_repeat Simple_repeat 1 34 0 252 212 23 53 chr3 41012111 41012243 -186512335 + (CGGGG)n Simple_repeat Simple_repeat 3 130 0 388 313 56 6 chr3 41012319 41012498 -186512080 - L1ME3 LINE L1 -200 5962 5775 195 100 0 0 chr3 41012556 41012586 -186511992 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 356 244 25 84 chr3 41013681 41013800 -186510778 + L2 LINE L2 3183 3294 -19 273 57 0 0 chr3 41013801 41013836 -186510742 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2011 117 0 0 chr3 41013839 41014121 -186510457 - AluSx SINE Alu -30 282 1 4162 216 63 9 chr3 41014732 41015186 -186509392 + L1MC2 LINE L1 1 429 -6135 1706 183 39 9 chr3 41015186 41015520 -186509058 - MER2 DNA MER2_type 0 344 1 4162 216 63 9 chr3 41015520 41016794 -186507784 + L1MC2 LINE L1 429 1837 -4727 * 5305 166 72 19 chr3 41016764 41018016 -186506562 + L1MC2 LINE L1 5416 6738 -24 383 301 78 54 chr3 41018196 41018528 -186506050 + L1ME2 LINE L1 3496 3835 -2729 707 234 81 38 chr3 41018547 41018884 -186505694 + L1ME2 LINE L1 5676 6023 -557 412 309 106 50 chr3 41018870 41019246 -186505332 + HAL1 LINE L1 3 399 -2108 * 2677 10 0 3 chr3 41019282 41019584 -186504994 + AluYa5 SINE Alu 1 301 -10 580 341 94 0 chr3 41019584 41019807 -186504771 - L2 LINE L2 -254 3059 2816 725 219 19 13 chr3 41019825 41019980 -186504598 - MLT1C LTR MaLR 0 467 312 424 194 5 161 chr3 41020005 41020191 -186504387 + L1ME2 LINE L1 6209 6365 -217 22 56 0 0 chr3 41020525 41020561 -186504017 + GC_rich Low_complexity Low_complexity 1 36 0 55 16 0 0 chr3 41020606 41020668 -186503910 + GC_rich Low_complexity Low_complexity 1 62 0 185 105 0 26 chr3 41020789 41020827 -186503751 + (CCCCCG)n Simple_repeat Simple_repeat 6 42 0 428 139 14 0 chr3 41020941 41021013 -186503565 - L1P LINE L1 -1170 4976 4904 1359 146 108 16 chr3 41021013 41021451 -186503127 - MER21A LTR ERV1 -364 499 1 2235 137 48 8 chr3 41021451 41021485 -186503093 - MER21A-int LTR ERV1 0 4191 4160 491 0 17 0 chr3 41021485 41021544 -186503034 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2235 137 48 8 chr3 41021544 41021881 -186502697 - MER21A-int LTR ERV1 -31 4160 3805 5121 206 6 12 chr3 41021882 41022990 -186501588 - L1 LINE L1 -1226 4920 3819 446 285 78 90 chr3 41023123 41023645 -186500933 - L1 LINE L1 -1225 4921 4406 21 156 0 0 chr3 41023669 41023714 -186500864 + AT_rich Low_complexity Low_complexity 1 45 0 307 240 40 0 chr3 41023839 41023914 -186500664 - L1MC5 LINE L1 -385 7576 7499 186 133 0 0 chr3 41026945 41026975 -186497603 + (GA)n Simple_repeat Simple_repeat 2 31 0 183 288 121 15 chr3 41027141 41027207 -186497371 - MIR SINE MIR -163 99 27 499 208 133 0 chr3 41027257 41027377 -186497201 + MIR SINE MIR 114 249 -13 631 189 0 0 chr3 41027736 41027847 -186496731 + L1ME LINE L1 5392 5502 -662 1685 320 49 33 chr3 41028423 41029255 -186495323 - L2 LINE L2 -222 3050 2171 396 281 96 7 chr3 41030872 41031018 -186493560 - L2 LINE L2 -3 3269 3111 824 250 81 0 chr3 41031162 41031398 -186493180 - MER90 LTR ERV1 0 614 360 540 314 19 39 chr3 41032557 41032764 -186491814 + MIR SINE MIR 16 218 -44 394 222 21 69 chr3 41032943 41033087 -186491491 - MIR3 SINE MIR -11 197 61 267 330 125 22 chr3 41033264 41033488 -186491090 + L2 LINE L2 3024 3270 -2 21 0 0 0 chr3 41034673 41034694 -186489884 + AT_rich Low_complexity Low_complexity 1 21 0 280 229 230 78 chr3 41035877 41036054 -186488524 - MIR SINE MIR -18 244 45 289 363 0 0 chr3 41036520 41036611 -186487967 + C-rich Low_complexity Low_complexity 1 91 0 292 226 39 50 chr3 41036831 41037012 -186487566 + (CCA)n Simple_repeat Simple_repeat 2 180 0 859 274 73 4 chr3 41037180 41037425 -186487153 - MIR SINE MIR 0 262 1 434 277 99 7 chr3 41037603 41037744 -186486834 - MIR SINE MIR -28 234 81 24 0 0 0 chr3 41038747 41038771 -186485807 + AT_rich Low_complexity Low_complexity 1 24 0 322 285 40 60 chr3 41039422 41039573 -186485005 + L1ME1 LINE L1 5988 6135 -31 1358 147 5 0 chr3 41039573 41039797 -186484781 + AluY SINE Alu 56 280 -31 34 55 0 0 chr3 41039801 41039856 -186484722 + GC_rich Low_complexity Low_complexity 1 55 0 * 171 42 0 26 chr3 41039828 41040136 -186484442 + GC_rich Low_complexity Low_complexity 1 300 0 50 75 0 0 chr3 41040138 41040244 -186484334 + GC_rich Low_complexity Low_complexity 1 106 0 1942 112 3 22 chr3 41040791 41041103 -186483475 - AluSx SINE Alu -6 306 1 26 30 0 0 chr3 41041150 41041183 -186483395 + AT_rich Low_complexity Low_complexity 1 33 0 2230 55 44 3 chr3 41041212 41041505 -186483073 - AluY SINE Alu -6 305 1 2955 169 35 11 chr3 41041505 41042078 -186482500 + L1P LINE L1 1832 2418 -3728 419 224 41 20 chr3 41042197 41042295 -186482283 + FRAM SINE Alu 63 162 -4 461 255 7 83 chr3 41042295 41042370 -186482208 - L1MC4 LINE L1 -1405 6590 6534 1699 146 38 0 chr3 41042370 41042658 -186481920 - AluJb SINE Alu -13 299 1 461 255 7 83 chr3 41042658 41042748 -186481830 - L1MC4 LINE L1 -1461 6534 6439 308 390 37 18 chr3 41043012 41043176 -186481402 - L2 LINE L2 -598 2716 2550 247 284 97 8 chr3 41043782 41043916 -186480662 + L2 LINE L2 1963 2108 -1206 1583 221 31 13 chr3 41043988 41044377 -186480201 + Charlie4a DNA MER1_type 38 433 -75 1972 106 11 7 chr3 41044378 41044661 -186479917 + AluSc SINE Alu 1 284 -25 425 313 91 5 chr3 41044715 41044913 -186479665 + L2 LINE L2 2171 2385 -929 502 238 14 56 chr3 41045260 41045368 -186479210 + L2 LINE L2 3134 3236 -36 1876 142 122 47 chr3 41045368 41045770 -186478808 - MSTB1 LTR MaLR 0 432 1 502 238 14 56 chr3 41045770 41045804 -186478774 + L2 LINE L2 3236 3270 -2 183 80 0 0 chr3 41045807 41045832 -186478746 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 217 316 13 25 chr3 41045961 41046040 -186478538 - L2 LINE L2 -198 3074 2997 210 327 0 0 chr3 41046732 41046787 -186477791 + G-rich Low_complexity Low_complexity 1 55 0 262 296 19 19 chr3 41046929 41047037 -186477541 + LTR16A1 LTR ERVL 350 457 0 419 192 0 0 chr3 41047076 41047154 -186477424 + L2 LINE L2 3195 3272 0 356 341 0 0 chr3 41048218 41048344 -186476234 + G-rich Low_complexity Low_complexity 1 126 0 21 36 0 0 chr3 41048349 41048377 -186476201 + GC_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 41048415 41048465 -186476113 + GC_rich Low_complexity Low_complexity 1 50 0 346 230 9 35 chr3 41048475 41048588 -186475990 + G-rich Low_complexity Low_complexity 2 111 0 203 309 0 0 chr3 41048631 41048686 -186475892 + GA-rich Low_complexity Low_complexity 3 57 0 260 282 113 8 chr3 41049035 41049159 -186475419 - L2 LINE L2 0 3272 3136 212 273 13 26 chr3 41049285 41049362 -186475216 + MIR3 SINE MIR 95 170 -38 447 52 0 0 chr3 41049514 41049572 -186475006 + (TC)n Simple_repeat Simple_repeat 2 59 0 285 29 0 0 chr3 41049572 41049606 -186474972 + (CA)n Simple_repeat Simple_repeat 2 35 0 2237 124 0 3 chr3 41050271 41050577 -186474001 + AluSx SINE Alu 1 305 -7 275 238 25 25 chr3 41050587 41050667 -186473911 + MIR SINE MIR 46 125 -83 419 195 0 11 chr3 41051589 41051676 -186472902 + L2 LINE L2 3224 3309 -4 30 0 0 0 chr3 41051971 41052001 -186472577 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 41052212 41052237 -186472341 + AT_rich Low_complexity Low_complexity 1 25 0 328 324 33 63 chr3 41052768 41053101 -186471477 - L2 LINE L2 -3 3310 2988 1077 153 40 22 chr3 41053265 41053493 -186471085 - L1MB7 LINE L1 -1 6183 5952 22 0 0 0 chr3 41053871 41053893 -186470685 + AT_rich Low_complexity Low_complexity 1 22 0 1695 179 3 17 chr3 41056206 41056497 -186468081 + AluJb SINE Alu 1 287 -25 6964 65 10 2 chr3 41056652 41058110 -186466468 + L1PA6 LINE L1 4691 6154 0 819 201 208 26 chr3 41059154 41059418 -186465160 + L1ME LINE L1 5371 5682 -488 550 222 0 0 chr3 41059420 41059519 -186465059 + MER33 DNA MER1_type 2 100 -224 2347 76 3 7 chr3 41059522 41059823 -186464755 + AluSg1 SINE Alu 1 300 -9 23 0 0 0 chr3 41060010 41060033 -186464545 + AT_rich Low_complexity Low_complexity 1 23 0 7723 159 27 23 chr3 41060133 41061717 -186462861 - L1P3 LINE L1 -4734 1141 2 475 317 54 5 chr3 41061960 41062181 -186462397 - MIR SINE MIR -8 254 23 243 152 0 0 chr3 41062357 41062403 -186462175 + C-rich Low_complexity Low_complexity 1 46 0 415 335 9 28 chr3 41062424 41062694 -186461884 + C-rich Low_complexity Low_complexity 1 264 0 231 203 0 0 chr3 41062727 41062791 -186461787 + C-rich Low_complexity Low_complexity 1 64 0 1806 111 8 0 chr3 41063015 41063268 -186461310 - AluSp SINE Alu -58 255 1 868 199 39 2 chr3 41063431 41063637 -186460941 - MIR SINE MIR -21 241 31 2174 111 3 0 chr3 41063639 41063936 -186460642 - AluSx SINE Alu -14 298 1 278 267 10 30 chr3 41064665 41064766 -186459812 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 613 285 43 40 chr3 41064847 41065100 -186459478 + MIR SINE MIR 9 262 0 180 0 0 0 chr3 41065253 41065273 -186459305 + (T)n Simple_repeat Simple_repeat 1 20 0 2583 53 0 0 chr3 41065739 41066038 -186458540 - AluY SINE Alu -11 300 2 23 33 0 0 chr3 41066685 41066715 -186457863 + AT_rich Low_complexity Low_complexity 1 30 0 1610 168 88 3 chr3 41068558 41068855 -186455723 - MSTB LTR MaLR -104 322 1 1056 243 145 33 chr3 41069060 41069488 -186455090 - MLT1G1 LTR MaLR 0 595 120 280 354 25 6 chr3 41069613 41069774 -186454804 + C-rich Low_complexity Low_complexity 3 166 0 289 251 5 87 chr3 41069838 41070033 -186454545 + C-rich Low_complexity Low_complexity 2 180 0 539 250 14 7 chr3 41070270 41070410 -186454168 + L1M1 LINE L1 552 692 -6873 620 270 37 11 chr3 41070482 41070671 -186453907 + MIR SINE MIR 25 218 -44 229 198 17 52 chr3 41071484 41071600 -186452978 + (CGGGG)n Simple_repeat Simple_repeat 3 114 0 * 269 264 11 22 chr3 41071532 41071714 -186452864 + (CGGG)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr3 41072598 41072621 -186451957 + AT_rich Low_complexity Low_complexity 1 23 0 8813 92 6 1 chr3 41073296 41074537 -186450041 - L1P LINE L1 -2503 3643 2396 21 0 0 0 chr3 41075417 41075438 -186449140 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 41076725 41076746 -186447832 + (CA)n Simple_repeat Simple_repeat 2 22 0 484 126 103 0 chr3 41076750 41076837 -186447741 - LTR37B LTR ERV1 -25 443 348 332 261 53 93 chr3 41076837 41077063 -186447515 + L1MC4 LINE L1 7755 7971 -71 838 245 78 96 chr3 41077128 41077558 -186447020 - L1MC4a LINE L1 -1725 6083 5662 1509 207 81 6 chr3 41077558 41077906 -186446672 - MLT1A2 LTR MaLR 0 374 1 838 245 78 96 chr3 41077906 41077986 -186446592 - L1MC4a LINE L1 -2146 5662 5582 447 133 13 13 chr3 41078898 41078973 -186445605 - FLAM SINE Alu -18 125 51 801 142 25 0 chr3 41078999 41079119 -186445459 - FLAM_C SINE Alu -20 123 1 1444 195 21 17 chr3 41080105 41080392 -186444186 - AluJo SINE Alu -24 288 1 483 71 61 0 chr3 41083390 41083488 -186441090 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 1031 149 30 1 chr3 41083550 41083844 -186440734 - MER2 DNA MER2_type -6 339 2 271 320 64 16 chr3 41084178 41084303 -186440275 + MIR3 SINE MIR 24 154 -54 384 195 22 54 chr3 41085387 41085572 -186439006 + G-rich Low_complexity Low_complexity 2 180 0 30 45 0 0 chr3 41085572 41085616 -186438962 + GC_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 41085688 41085718 -186438860 + GC_rich Low_complexity Low_complexity 1 30 0 30 83 0 0 chr3 41085747 41085819 -186438759 + GC_rich Low_complexity Low_complexity 1 72 0 3120 49 10 0 chr3 41086343 41086731 -186437847 - L1PA4 LINE L1 0 6155 5764 236 204 19 39 chr3 41086847 41086950 -186437628 + C-rich Low_complexity Low_complexity 1 101 0 486 308 12 23 chr3 41087005 41087177 -186437401 + C-rich Low_complexity Low_complexity 3 172 0 240 309 0 68 chr3 41087208 41087399 -186437179 + CT-rich Low_complexity Low_complexity 2 179 0 674 230 106 38 chr3 41089399 41089738 -186434840 + HAL1 LINE L1 1180 1541 -966 2104 125 3 13 chr3 41089740 41090051 -186434527 + AluSc SINE Alu 1 308 -1 474 297 169 38 chr3 41090099 41090544 -186434034 + MLT1J LTR MaLR 1 503 -8 1348 221 59 27 chr3 41093070 41093441 -186431137 - MLT1D LTR MaLR -3 502 120 825 287 91 51 chr3 41093874 41094449 -186430129 + L2 LINE L2 2709 3313 0 230 316 112 0 chr3 41094573 41094671 -186429907 - L2 LINE L2 -469 2845 2737 1360 230 60 0 chr3 41094676 41095007 -186429571 - L1MC4 LINE L1 -194 7848 7498 1011 245 3 52 chr3 41095154 41095464 -186429114 - L1ME1 LINE L1 -5 6161 5867 717 247 71 24 chr3 41095672 41096008 -186428570 + HAL1 LINE L1 796 1147 -1360 247 257 17 21 chr3 41096010 41096159 -186428419 + G-rich Low_complexity Low_complexity 4 236 0 30 59 0 0 chr3 41097401 41097452 -186427126 + GC_rich Low_complexity Low_complexity 1 51 0 1226 154 28 5 chr3 41099536 41099750 -186424828 - MER20 DNA MER1_type 0 219 1 26 0 0 0 chr3 41100234 41100260 -186424318 + AT_rich Low_complexity Low_complexity 1 26 0 469 264 16 23 chr3 41100428 41100557 -186424021 - MIR SINE MIR -103 159 32 189 107 0 0 chr3 41100911 41100939 -186423639 + (A)n Simple_repeat Simple_repeat 1 28 0 41 77 0 23 chr3 41101500 41101630 -186422948 + GC_rich Low_complexity Low_complexity 1 127 0 300 302 23 39 chr3 41102020 41102149 -186422429 + L2 LINE L2 3116 3242 -30 195 267 47 23 chr3 41103264 41103350 -186421228 + MIR3 SINE MIR 115 202 -6 783 299 100 18 chr3 41104127 41104468 -186420110 - MLT1H LTR MaLR -13 536 168 1529 175 25 35 chr3 41104602 41104887 -186419691 + AluJo SINE Alu 27 308 -4 2455 133 25 7 chr3 41104887 41105322 -186419256 + L1MB3 LINE L1 5557 5999 -184 1194 96 0 0 chr3 41105450 41105607 -186418971 + (C)n Simple_repeat Simple_repeat 1 157 0 280 137 34 60 chr3 41105614 41105731 -186418847 + (CGGG)n Simple_repeat Simple_repeat 4 117 0 * 371 188 22 39 chr3 41105697 41105878 -186418700 + (CGCGG)n Simple_repeat Simple_repeat 2 179 0 235 226 23 23 chr3 41105897 41106030 -186418548 + (CCCCG)n Simple_repeat Simple_repeat 4 136 0 366 260 84 32 chr3 41106459 41106613 -186417965 - HsTC2 DNA Tc2 -3 1895 16 31 92 0 0 chr3 41106743 41106830 -186417748 + GC_rich Low_complexity Low_complexity 1 87 0 23 54 0 0 chr3 41106850 41106887 -186417691 + GC_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr3 41106931 41106973 -186417605 + GC_rich Low_complexity Low_complexity 1 42 0 240 35 0 0 chr3 41107091 41107120 -186417458 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 989 76 7 0 chr3 41107481 41107625 -186416953 - L1MB4 LINE L1 0 6180 6036 186 359 47 19 chr3 41107627 41107733 -186416845 - L2 LINE L2 -5 3308 3200 707 276 0 0 chr3 41107950 41108095 -186416483 - MER63A DNA MER1_type -11 199 55 246 196 232 0 chr3 41108994 41109050 -186415528 + MER58 DNA MER1_type 1 69 -2351 1983 171 0 0 chr3 41110142 41110446 -186414132 - AluJb SINE Alu -8 304 1 88 35 0 0 chr3 41110647 41110763 -186413815 + GC_rich Low_complexity Low_complexity 1 116 0 349 234 0 0 chr3 41110787 41110898 -186413680 + G-rich Low_complexity Low_complexity 1 111 0 1037 209 119 4 chr3 41162347 41162615 -186361963 + MLT1E3 LTR MaLR 326 624 0 26 0 0 0 chr3 41164375 41164401 -186360177 + AT_rich Low_complexity Low_complexity 1 26 0 1542 192 19 6 chr3 41164579 41164892 -186359686 - MLT1A1 LTR MaLR 0 365 49 347 280 125 22 chr3 41164999 41165451 -186359127 + HAL1 LINE L1 1344 1896 -611 384 216 10 10 chr3 41165752 41165849 -186358729 + MLT1J2 LTR MaLR 79 175 -275 285 193 14 14 chr3 41165943 41166025 -186358553 + MLT1J2 LTR MaLR 309 428 -19 710 245 19 39 chr3 41166051 41166259 -186358319 + MIR SINE MIR 1 204 -58 861 174 78 6 chr3 41166298 41166465 -186358113 - MSTD LTR MaLR 0 396 218 626 217 102 66 chr3 41166620 41166864 -186357714 - MSTD LTR MaLR -138 258 6 322 231 111 60 chr3 41168216 41168333 -186356245 + L2 LINE L2 3185 3307 -6 3469 172 10 30 chr3 41169645 41170348 -186354230 + L1PB4 LINE L1 5467 6155 -1 243 262 16 0 chr3 41170482 41170543 -186354035 + L2 LINE L2 2990 3051 -221 25 31 0 0 chr3 41171054 41171086 -186353492 + AT_rich Low_complexity Low_complexity 1 32 0 264 253 200 0 chr3 41171724 41171819 -186352759 - MIR SINE MIR -40 222 109 335 292 73 22 chr3 41171886 41172023 -186352555 + MIR3 SINE MIR 3 146 -62 221 239 0 14 chr3 41172148 41172219 -186352359 + CT-rich Low_complexity Low_complexity 4 73 0 420 281 90 9 chr3 41172478 41172890 -186351688 + L1ME LINE L1 5066 5513 -649 759 200 0 7 chr3 41173296 41173431 -186351147 - AluJo SINE Alu -178 134 1 10034 131 5 11 chr3 41174393 41176002 -186348576 + L1PA12 LINE L1 1426 3024 -4557 721 92 17 0 chr3 41177079 41177199 -186347379 + (GA)n Simple_repeat Simple_repeat 2 123 0 1251 218 17 9 chr3 41177586 41177934 -186346644 - L1M4 LINE L1 -946 5200 4850 8623 62 1 3 chr3 41177935 41179075 -186345503 + L1P LINE L1 1 1138 -5008 7491 35 1 0 chr3 41179175 41180591 -186343987 + L1PA4 LINE L1 4736 6152 -3 24 0 0 0 chr3 41180591 41180615 -186343963 + AT_rich Low_complexity Low_complexity 1 24 0 16515 36 1 0 chr3 41181215 41183338 -186341240 - L1P LINE L1 -1397 4749 2625 20196 83 12 0 chr3 41183438 41186301 -186338277 + L1P LINE L1 100 2996 -3150 1895 139 29 0 chr3 41186468 41186778 -186337800 - AluSx SINE Alu 0 318 1 300 313 0 31 chr3 41186860 41186956 -186337622 + L2 LINE L2 3195 3287 -26 257 231 0 0 chr3 41187422 41187487 -186337091 - L1ME4a LINE L1 -4 6117 6053 204 287 319 0 chr3 41187936 41188030 -186336548 - L2 LINE L2 0 3272 3149 1847 151 3 11 chr3 41188732 41189016 -186335562 + AluJo SINE Alu 1 282 -30 32 0 0 0 chr3 41189975 41190007 -186334571 + AT_rich Low_complexity Low_complexity 1 32 0 2058 93 29 11 chr3 41190154 41190459 -186334119 + AluSp SINE Alu 1 310 0 22 56 0 0 chr3 41190490 41190526 -186334052 + AT_rich Low_complexity Low_complexity 1 36 0 2003 154 28 6 chr3 41190624 41190981 -186333597 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr3 41191509 41191545 -186333033 + AT_rich Low_complexity Low_complexity 1 36 0 248 258 16 0 chr3 41191787 41191849 -186332729 - L1ME LINE L1 -492 5629 5567 1228 249 101 8 chr3 41192027 41192392 -186332186 - LTR16A LTR ERVL 0 450 52 2271 103 0 0 chr3 41194153 41194454 -186330124 - AluSg SINE Alu -9 301 1 356 315 63 0 chr3 41195216 41195359 -186329219 - MIR3 SINE MIR -12 196 45 960 305 53 8 chr3 41195439 41196075 -186328503 - L1MEc LINE L1 -2982 3147 2483 1047 187 42 0 chr3 41196179 41196393 -186328185 + MLT1A1 LTR MaLR 143 365 0 303 290 45 52 chr3 41196400 41196690 -186327888 - L1MEc LINE L1 -3749 2380 2093 2336 74 40 0 chr3 41196719 41197018 -186327560 - AluY SINE Alu 0 311 1 1727 148 7 49 chr3 41197278 41197437 -186327141 - AluJo SINE Alu -21 291 127 247 24 24 24 chr3 41197437 41197478 -186327100 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1908 151 11 0 chr3 41197478 41197757 -186326821 - AluJb SINE Alu -30 282 1 1727 148 7 49 chr3 41197757 41197900 -186326678 - AluJo SINE Alu -183 129 1 613 326 91 34 chr3 41198011 41198541 -186326037 - L1MEc LINE L1 -4585 1725 1166 265 281 84 86 chr3 41198563 41199345 -186325233 - L1MEc LINE L1 -5100 1019 239 485 276 119 25 chr3 41199785 41200147 -186324431 + L1ME LINE L1 5405 5800 -321 22 56 0 0 chr3 41200190 41200226 -186324352 + AT_rich Low_complexity Low_complexity 1 36 0 286 238 168 19 chr3 41200405 41200619 -186323959 + L1ME4a LINE L1 5765 6010 -111 976 305 125 54 chr3 41203158 41203763 -186320815 - L1MC/D LINE L1 -803 5343 4783 198 0 0 0 chr3 41203763 41203785 -186320793 + (TA)n Simple_repeat Simple_repeat 2 23 0 976 305 125 54 chr3 41203785 41204506 -186320072 - L1MC/D LINE L1 -1363 4783 4060 249 255 0 31 chr3 41204561 41204659 -186319919 - L1MC/D LINE L1 -2192 3954 3860 816 172 0 0 chr3 41204700 41204828 -186319750 - FLAM_A SINE Alu -5 128 1 1139 208 61 20 chr3 41205043 41205389 -186319189 - L1MB7 LINE L1 0 6995 6636 1484 219 0 0 chr3 41205394 41205705 -186318873 - L1MB7 LINE L1 -467 6510 6200 1931 199 8 3 chr3 41205712 41206103 -186318475 + MER70B LTR ERVL 186 578 0 5705 236 45 45 chr3 41206107 41207397 -186317181 - L1MB7 LINE L1 -1951 5006 3718 10835 85 5 29 chr3 41207397 41209045 -186315533 + L1PA7 LINE L1 3836 5460 -694 1587 124 26 4 chr3 41209045 41209271 -186315307 + AluSc SINE Alu 1 231 -78 10835 85 5 29 chr3 41209271 41209947 -186314631 + L1PA7 LINE L1 5460 6151 -3 5705 236 45 45 chr3 41209947 41211339 -186313239 - L1MB7 LINE L1 -3239 3718 2361 24 0 0 0 chr3 41211353 41211377 -186313201 + AT_rich Low_complexity Low_complexity 1 24 0 1604 259 69 19 chr3 41211414 41212209 -186312369 - L1MB7 LINE L1 -4833 2022 1188 1935 139 17 0 chr3 41212221 41212516 -186312062 - AluSx SINE Alu -12 300 1 379 275 46 34 chr3 41213083 41213301 -186311277 - L1MB7 LINE L1 -6314 541 11 208 244 0 0 chr3 41216284 41216329 -186308249 + (CA)n Simple_repeat Simple_repeat 1 45 0 600 254 67 12 chr3 41218022 41218187 -186306391 - MIR SINE MIR -7 255 82 1385 185 120 0 chr3 41218595 41218854 -186305724 - AluJb SINE Alu -22 290 1 325 288 48 0 chr3 41220459 41220584 -186303994 + MIR SINE MIR 121 251 -11 324 355 87 7 chr3 41222906 41223044 -186301534 - L2 LINE L2 0 3272 3124 459 0 0 0 chr3 41223137 41223188 -186301390 + (TG)n Simple_repeat Simple_repeat 2 52 0 260 83 0 0 chr3 41223494 41223530 -186301048 - Alu SINE Alu -266 36 1 891 151 22 22 chr3 41223583 41223768 -186300810 + MER53 DNA DNA 4 188 -1 200 135 27 0 chr3 41224088 41224125 -186300453 + (TA)n Simple_repeat Simple_repeat 2 39 0 789 233 50 80 chr3 41224131 41224431 -186300147 - L2 LINE L2 0 3313 3023 21 0 0 0 chr3 41224431 41224452 -186300126 + AT_rich Low_complexity Low_complexity 1 21 0 1153 151 9 24 chr3 41224541 41224753 -186299825 - SVA Other Other -746 640 432 1785 298 58 67 chr3 41224753 41225603 -186298975 - L2 LINE L2 -268 3045 2206 497 245 28 14 chr3 41225606 41225749 -186298829 + LTR16A1 LTR ERVL 12 156 -301 627 253 50 10 chr3 41225806 41226004 -186298574 + LTR16A1 LTR ERVL 248 453 -4 254 186 0 0 chr3 41226657 41226716 -186297862 - L1MA5A LINE L1 0 6297 6239 37 0 0 0 chr3 41227952 41227989 -186296589 + AT_rich Low_complexity Low_complexity 1 37 0 38647 70 4 2 chr3 41228017 41234153 -186290425 - L1PA5 LINE L1 -2 6152 3 2953 115 0 2 chr3 41234152 41234614 -186289964 - L1MA5A LINE L1 -46 6251 5791 * 4385 166 3 32 chr3 41234618 41235551 -186289027 + L1 LINE L1 4252 5157 -989 1382 209 59 30 chr3 41235559 41235985 -186288593 - L1ME3 LINE L1 -1 6161 5724 233 29 29 0 chr3 41236105 41236139 -186288439 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 10557 35 1 1 chr3 41236142 41238192 -186286386 - L1PA3 LINE L1 -3 6152 4102 4954 63 1 0 chr3 41238201 41238852 -186285726 - L1P LINE L1 -5486 660 9 343 359 35 7 chr3 41238864 41239006 -186285572 - MIR3 SINE MIR -62 146 1 318 264 13 14 chr3 41240017 41240106 -186284472 - MIR SINE MIR -97 111 30 3900 197 11 36 chr3 41240773 41240994 -186283584 - L1MB4 LINE L1 -1 6179 5954 2121 70 0 0 chr3 41240994 41241251 -186283327 - AluY SINE Alu -11 300 44 1587 203 0 37 chr3 41241251 41241545 -186283033 - AluJb SINE Alu -27 285 1 3900 197 11 36 chr3 41241545 41242268 -186282310 - L1MB4 LINE L1 -224 5956 5258 37978 49 1 0 chr3 41242390 41248521 -186276057 + L1PA4 LINE L1 14 6148 -7 12717 119 15 3 chr3 41248620 41250638 -186273940 - Tigger1 DNA MER2_type 0 2418 377 471 311 106 17 chr3 41251086 41251266 -186273312 - MIR SINE MIR -44 218 23 455 286 53 8 chr3 41251593 41251726 -186272852 + MIR SINE MIR 36 174 -88 317 342 87 5 chr3 41252778 41252962 -186271616 + L2 LINE L2 2538 2736 -578 1176 247 60 8 chr3 41253009 41253393 -186271185 - LTR16C LTR ERVL -1 490 87 387 398 91 24 chr3 41253485 41253902 -186270676 + L2 LINE L2 2804 3248 -24 234 116 0 0 chr3 41254148 41254191 -186270387 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 324 14 28 chr3 41254217 41254359 -186270219 + GA-rich Low_complexity Low_complexity 5 144 0 1068 211 175 14 chr3 41255145 41255589 -186268989 + LTR50 LTR ERVL 1 372 -423 501 226 9 17 chr3 41255589 41255704 -186268874 - MER81 DNA DNA 0 114 1 1068 211 175 14 chr3 41255704 41255837 -186268741 + LTR50 LTR ERVL 372 787 -8 292 279 180 18 chr3 41256068 41256179 -186268399 - MIR SINE MIR -85 177 49 260 239 65 33 chr3 41256929 41257021 -186267557 + MIR SINE MIR 90 184 -78 1318 239 72 21 chr3 41257190 41257521 -186267057 - MLT1E LTR MaLR -40 553 206 1767 181 20 0 chr3 41257694 41257987 -186266591 + AluJo SINE Alu 1 299 -13 431 186 159 28 chr3 41258018 41258163 -186266415 - MLT1E LTR MaLR -385 164 1 273 254 16 0 chr3 41259059 41259122 -186265456 + MIR SINE MIR 89 152 -56 408 247 50 85 chr3 41260001 41260206 -186264372 - MIR SINE MIR -62 146 3 196 300 8 75 chr3 41260206 41260314 -186264264 - L2 LINE L2 -629 2685 2586 212 345 83 36 chr3 41260308 41260505 -186264073 + L2 LINE L2 2016 2229 -1085 2293 83 0 7 chr3 41260505 41260805 -186263773 - AluSg SINE Alu -12 298 1 212 345 83 36 chr3 41260805 41260859 -186263719 + L2 LINE L2 2229 2279 -1035 1009 315 50 38 chr3 41260859 41261380 -186263198 + L2 LINE L2 1531 2057 -1257 225 308 48 39 chr3 41261416 41261520 -186263058 + L2 LINE L2 2212 2316 -998 1648 136 4 19 chr3 41261630 41261887 -186262691 - AluSx SINE Alu -3 309 57 235 235 0 87 chr3 41262234 41262349 -186262229 + T-rich Low_complexity Low_complexity 2 106 0 415 273 246 8 chr3 41262371 41262635 -186261943 + LTR16A1 LTR ERVL 5 331 -126 2019 102 13 3 chr3 41262673 41262976 -186261602 - L1MA3 LINE L1 -7 6298 5993 5582 194 23 10 chr3 41262976 41264370 -186260208 - L1M1 LINE L1 -2579 4986 3572 35918 82 12 11 chr3 41264384 41268163 -186256415 - L1PA6 LINE L1 -2 6152 2380 2941 135 49 6 chr3 41268163 41268651 -186255927 + MER9 LTR ERVK 1 509 -2 35918 82 12 11 chr3 41268651 41271023 -186253555 - L1PA6 LINE L1 -3774 2380 12 6756 113 23 16 chr3 41271035 41272244 -186252334 - L1M1 LINE L1 -3986 3579 2363 * 8733 154 18 10 chr3 41272243 41273727 -186250851 - L1M1 LINE L1 -6053 1512 18 589 232 49 0 chr3 41273736 41273878 -186250700 + LTR16A1 LTR ERVL 309 457 0 341 187 41 140 chr3 41274502 41274673 -186249905 + MER103 DNA DNA 1 154 -12 293 200 0 0 chr3 41274780 41274835 -186249743 - L1PA15-16 LINE L1 -3905 2944 2890 8289 135 60 6 chr3 41274842 41275426 -186249152 + L1PA11 LINE L1 3979 4530 -1644 2156 103 14 3 chr3 41275426 41275717 -186248861 + AluY SINE Alu 1 294 -17 8289 135 60 6 chr3 41275717 41277280 -186247298 + L1PA11 LINE L1 4530 6169 -5 1884 223 32 34 chr3 41277352 41277858 -186246720 - MLT1D LTR MaLR 0 505 1 290 350 43 43 chr3 41278592 41278778 -186245800 + MIR3 SINE MIR 12 197 -11 480 35 0 0 chr3 41279701 41279759 -186244819 + (CAA)n Simple_repeat Simple_repeat 2 59 0 379 276 38 9 chr3 41280111 41280216 -186244362 + MIR SINE MIR 32 139 -123 369 309 75 16 chr3 41281423 41281611 -186242967 + MIR SINE MIR 64 262 0 1258 230 64 4 chr3 41281835 41282120 -186242458 + AluJo SINE Alu 1 301 0 8401 209 46 17 chr3 41282271 41285618 -186238960 + L1PB4 LINE L1 2621 6078 -78 2050 67 63 8 chr3 41285618 41285919 -186238659 + AluY SINE Alu 1 316 0 8401 209 46 17 chr3 41285919 41285999 -186238579 + L1PB4 LINE L1 6078 6154 -2 249 83 0 0 chr3 41286085 41286121 -186238457 + (A)n Simple_repeat Simple_repeat 1 36 0 240 59 0 0 chr3 41286168 41286202 -186238376 + (TG)n Simple_repeat Simple_repeat 1 34 0 480 309 39 52 chr3 41286391 41286621 -186237957 - MIR SINE MIR -4 258 32 1052 249 81 38 chr3 41287352 41287849 -186236729 - HAL1b LINE L1 -468 880 363 452 321 71 45 chr3 41287873 41288184 -186236394 - HAL1b LINE L1 -1027 321 3 23 54 0 0 chr3 41288316 41288353 -186236225 + AT_rich Low_complexity Low_complexity 1 37 0 978 137 20 85 chr3 41288353 41288601 -186235977 - L1MB2 LINE L1 -2 6169 5938 922 158 59 34 chr3 41288701 41288911 -186235667 + THE1C LTR MaLR 180 375 0 3271 167 37 19 chr3 41288911 41289818 -186234760 - L1MB2 LINE L1 -250 5933 5019 400 293 30 23 chr3 41290642 41290775 -186233803 + MIR SINE MIR 24 157 -105 * 474 252 150 7 chr3 41290768 41290915 -186233663 - MIR SINE MIR 0 262 95 226 254 16 0 chr3 41290987 41291050 -186233528 + MIR SINE MIR 154 217 -45 2245 144 48 26 chr3 41291067 41291483 -186233095 + MSTB1 LTR MaLR 8 432 0 2258 178 96 15 chr3 41292126 41292655 -186231923 + LTR49 LTR ERV1 1 572 -23 1605 185 158 44 chr3 41292854 41293335 -186231243 + LTR10A LTR ERV1 13 548 -61 1174 213 49 31 chr3 41294757 41295350 -186229228 + MLT1E1 LTR MaLR 2 593 0 408 208 169 82 chr3 41295960 41296143 -186228435 + MIR SINE MIR 63 261 -1 298 301 49 35 chr3 41296157 41296300 -186228278 - L2 LINE L2 -213 3059 2915 434 255 87 13 chr3 41297589 41297738 -186226840 + L2 LINE L2 3154 3313 0 288 0 0 0 chr3 41298496 41298528 -186226050 + (T)n Simple_repeat Simple_repeat 1 32 0 269 246 0 0 chr3 41299045 41299106 -186225472 + MIR SINE MIR 58 118 -144 239 275 0 58 chr3 41299257 41299326 -186225252 + L2 LINE L2 3207 3271 -1 185 292 62 31 chr3 41300003 41300099 -186224479 + L2 LINE L2 1840 1938 -1376 500 214 104 32 chr3 41300176 41300330 -186224248 + MLT1J2 LTR MaLR 281 445 -5 197 390 11 0 chr3 41301803 41301898 -186222680 - MIR SINE MIR -79 183 88 235 276 0 41 chr3 41302225 41302323 -186222255 + MARNA DNA Mariner 141 234 -352 325 141 0 16 chr3 41302986 41303050 -186221528 - MER116 DNA Mariner -17 63 1 2147 231 83 0 chr3 41303252 41303785 -186220793 + MLT1G LTR MaLR 14 590 0 40 21 0 0 chr3 41304128 41304175 -186220403 + AT_rich Low_complexity Low_complexity 1 47 0 1036 158 100 32 chr3 41304175 41304365 -186220213 - AluJb SINE Alu -25 287 85 335 249 83 126 chr3 41304374 41304795 -186219783 - L1ME4a LINE L1 -12 6109 5707 195 129 0 0 chr3 41304924 41304955 -186219623 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr3 41305329 41305350 -186219228 + (T)n Simple_repeat Simple_repeat 1 21 0 392 322 166 19 chr3 41305723 41305928 -186218650 + MIR SINE MIR 22 256 -6 21 57 0 0 chr3 41305950 41305985 -186218593 + AT_rich Low_complexity Low_complexity 1 35 0 1789 54 4 0 chr3 41305985 41306224 -186218354 - L1PA7 LINE L1 0 6154 5915 688 71 0 0 chr3 41306325 41306423 -186218155 + AluY SINE Alu 214 311 0 1836 27 0 0 chr3 41306423 41306647 -186217931 - L1P3 LINE L1 -455 5699 5476 1717 101 0 0 chr3 41306657 41306885 -186217693 - AluSg SINE Alu -82 228 1 1409 226 36 10 chr3 41307282 41307407 -186217171 + AluJo SINE Alu 1 121 -191 240 35 0 0 chr3 41307407 41307436 -186217142 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 1409 226 36 10 chr3 41307436 41307611 -186216967 + AluJo SINE Alu 121 309 -3 1999 145 17 26 chr3 41308345 41308696 -186215882 - MER7A DNA MER2_type 0 346 1 372 301 53 60 chr3 41309079 41309317 -186215261 - MIR SINE MIR -6 256 5 180 381 36 0 chr3 41310645 41310729 -186213849 - L2 LINE L2 -1 3312 3226 978 204 0 32 chr3 41311662 41311878 -186212700 - MER3 DNA MER1_type 0 209 1 1065 121 0 0 chr3 41312095 41312260 -186212318 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 414 239 133 37 chr3 41312547 41312735 -186211843 - MIR SINE MIR -11 251 46 866 299 45 27 chr3 41313610 41314052 -186210526 - L1ME3A LINE L1 -222 6446 5997 762 125 0 0 chr3 41314089 41314193 -186210385 + L1PA8A LINE L1 6010 6113 -18 252 0 0 0 chr3 41314202 41314230 -186210348 + (TA)n Simple_repeat Simple_repeat 2 29 0 3579 233 64 14 chr3 41314231 41315382 -186209196 - L1ME3A LINE L1 -1287 5357 4149 2509 231 33 17 chr3 41315404 41316184 -186208394 - L1ME3A LINE L1 -4835 1707 915 1063 179 39 5 chr3 41316679 41316886 -186207692 + MER20 DNA MER1_type 1 214 -5 1215 152 31 121 chr3 41316908 41317289 -186207289 - MLT1A1 LTR MaLR 0 365 19 1964 65 0 16 chr3 41317528 41317846 -186206732 - AluY SINE Alu 0 352 39 23 33 0 0 chr3 41318173 41318203 -186206375 + AT_rich Low_complexity Low_complexity 1 30 0 503 46 0 0 chr3 41319239 41319304 -186205274 - L1PA8A LINE L1 -265 5866 5802 23 0 0 0 chr3 41319545 41319568 -186205010 + AT_rich Low_complexity Low_complexity 1 23 0 6023 89 3 12 chr3 41319568 41320863 -186203715 - L1PA8 LINE L1 -8 6880 5559 13373 102 102 11 chr3 41320863 41323147 -186201431 - L1PA8 LINE L1 -4207 2656 164 423 170 80 20 chr3 41325542 41325642 -186198936 - MER5C DNA MER1_type -5 319 214 600 203 15 0 chr3 41325660 41325793 -186198785 + L1MD3 LINE L1 7842 7976 -19 617 202 138 11 chr3 41325800 41325988 -186198590 - MER5C DNA MER1_type -92 232 21 195 332 32 86 chr3 41326310 41326497 -186198081 - L2 LINE L2 -140 3132 2956 1140 184 88 94 chr3 41326885 41326977 -186197601 + MLT1C LTR MaLR 10 101 -366 2325 84 3 37 chr3 41326977 41327299 -186197279 + AluY SINE Alu 1 311 0 1140 184 88 94 chr3 41327299 41327663 -186196915 + MLT1C LTR MaLR 101 463 -4 228 135 0 0 chr3 41327934 41327971 -186196607 + (TCC)n Simple_repeat Simple_repeat 3 39 0 236 191 63 16 chr3 41328490 41328553 -186196025 - MLT1K LTR MaLR -23 565 500 293 175 0 0 chr3 41329107 41329164 -186195414 - MLT2B1 LTR ERVL 0 520 464 213 139 0 0 chr3 41329178 41329221 -186195357 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 1265 187 159 89 chr3 41329221 41329649 -186194929 - MLT2B1 LTR ERVL -62 458 1 430 256 48 62 chr3 41330203 41330368 -186194210 + MIR3 SINE MIR 43 207 -1 304 296 96 0 chr3 41331094 41331209 -186193369 + L1ME4a LINE L1 5975 6100 -21 2003 146 19 21 chr3 41332288 41332664 -186191914 + THE1C LTR MaLR 1 375 0 322 373 55 41 chr3 41332782 41333074 -186191504 + L2 LINE L2 2969 3264 -8 419 281 0 0 chr3 41334514 41334610 -186189968 - MIR3 SINE MIR -32 176 81 350 238 32 0 chr3 41334837 41334924 -186189654 - MIR SINE MIR -65 143 71 290 267 69 46 chr3 41335264 41335481 -186189097 - HAL1 LINE L1 -22 2485 2264 338 246 56 56 chr3 41335634 41335776 -186188802 - HAL1b LINE L1 -457 891 750 2159 123 10 0 chr3 41336134 41336436 -186188142 - AluSg SINE Alu -5 305 1 387 323 80 30 chr3 41336578 41336779 -186187799 - HAL1 LINE L1 -753 1754 1544 665 283 118 31 chr3 41336779 41337193 -186187385 - LTR16A LTR ERVL 0 450 1 485 266 51 51 chr3 41337295 41337453 -186187125 - MER91A DNA MER1_type -19 177 20 1520 188 105 3 chr3 41338464 41338815 -186185763 + MLT1B LTR MaLR 4 390 0 198 217 17 67 chr3 41339471 41339531 -186185047 + MIR SINE MIR 68 124 -138 21 0 0 0 chr3 41339800 41339821 -186184757 + AT_rich Low_complexity Low_complexity 1 21 0 220 200 22 0 chr3 41339838 41339883 -186184695 + L2 LINE L2 3264 3309 -4 24 0 0 0 chr3 41339929 41339953 -186184625 + AT_rich Low_complexity Low_complexity 1 24 0 1930 159 47 0 chr3 41341017 41341338 -186183240 + Tigger7 DNA MER2_type 1 336 -2151 330 182 26 26 chr3 41341438 41341515 -186183063 + MLT2F LTR ERVL 587 663 0 269 250 22 22 chr3 41341629 41341721 -186182857 + (CAT)n Simple_repeat Simple_repeat 2 93 0 183 387 0 0 chr3 41341742 41341804 -186182774 - MIR SINE MIR -115 93 32 228 306 22 82 chr3 41341817 41342000 -186182578 + L2 LINE L2 688 859 -2455 2088 139 0 16 chr3 41342140 41342443 -186182135 - AluSx SINE Alu -14 298 1 2265 117 0 0 chr3 41342925 41343233 -186181345 - AluSx SINE Alu -4 308 1 1085 138 12 0 chr3 41343358 41343518 -186181060 + AluSq SINE Alu 143 304 -9 2522 214 30 22 chr3 41343524 41344196 -186180382 + L1ME2 LINE L1 5487 6163 -1 589 290 62 9 chr3 41344923 41345147 -186179431 + LTR16C LTR ERVL 253 488 -3 316 331 44 52 chr3 41345980 41346182 -186178396 + MIR SINE MIR 6 209 -53 1253 212 90 20 chr3 41346187 41346631 -186177947 - Charlie4a DNA MER1_type 0 508 34 542 221 33 0 chr3 41347075 41347197 -186177381 - MER63A DNA MER1_type -33 177 52 456 182 40 0 chr3 41347617 41347716 -186176862 - MER58 DNA MER1_type 0 2420 2318 246 305 9 67 chr3 41347713 41347818 -186176760 - MER58 DNA MER1_type -242 99 1 * 370 211 84 0 chr3 41348027 41348122 -186176456 - MER103 DNA DNA -51 115 13 1220 149 22 26 chr3 41348544 41348772 -186175806 - L1PA8 LINE L1 0 6172 5946 1075 224 204 2 chr3 41349144 41349725 -186174853 - LTR50 LTR ERVL 0 795 4 228 280 27 27 chr3 41350348 41350423 -186174155 + MIR SINE MIR 48 122 -140 623 305 111 4 chr3 41350873 41351099 -186173479 - MIR SINE MIR -10 252 3 241 330 198 30 chr3 41351172 41351369 -186173209 - MIR SINE MIR -15 247 18 2492 66 0 3 chr3 41352001 41352306 -186172272 + AluY SINE Alu 1 304 -7 285 128 0 0 chr3 41353028 41353075 -186171503 + (CCCA)n Simple_repeat Simple_repeat 2 48 0 2162 117 10 0 chr3 41353144 41353444 -186171134 - AluSq SINE Alu -10 303 1 231 321 46 84 chr3 41353507 41353638 -186170940 - L2 LINE L2 0 3272 3147 1243 250 22 112 chr3 41353651 41354187 -186170391 + L2 LINE L2 2824 3311 -2 321 267 111 0 chr3 41355778 41355868 -186168710 + L2 LINE L2 3163 3262 -10 192 77 0 0 chr3 41355870 41355896 -186168682 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 252 371 72 42 chr3 41355911 41356148 -186168430 + L2 LINE L2 3025 3268 -4 284 300 146 18 chr3 41356370 41356700 -186167878 - L1ME LINE L1 -253 5868 5497 591 267 30 79 chr3 41358724 41359027 -186165551 + LTR16A1 LTR ERVL 166 453 -4 328 218 103 0 chr3 41359038 41359116 -186165462 - MIR SINE MIR -70 192 107 2403 175 75 46 chr3 41409888 41410384 -186114194 - MER67D LTR ERV1 -4 510 1 208 253 93 0 chr3 41411033 41411108 -186113470 - MIR SINE MIR -121 141 60 1984 84 247 167 chr3 41411179 41411717 -186112861 + LTR12 LTR ERV1 1 581 -133 831 255 77 21 chr3 41412430 41412665 -186111913 - LTR67 LTR ERVL -2 555 308 1941 98 19 0 chr3 41412723 41412989 -186111589 - L1PA13 LINE L1 0 6163 5893 223 219 61 73 chr3 41412994 41413076 -186111502 - MIR SINE MIR -111 151 71 305 282 82 0 chr3 41413076 41413186 -186111392 + L2 LINE L2 3191 3309 -4 24 0 0 0 chr3 41413342 41413366 -186111212 + AT_rich Low_complexity Low_complexity 1 24 0 241 221 0 0 chr3 41414623 41414691 -186109887 - L1MC4 LINE L1 -1339 6703 6636 523 302 47 21 chr3 41414856 41415048 -186109530 + LTR16C LTR ERVL 268 464 -27 2220 262 49 50 chr3 41415059 41415386 -186109192 - MER21B LTR ERV1 -109 754 428 2334 144 31 25 chr3 41415386 41415746 -186108832 - THE1B LTR MaLR -2 362 1 2220 262 49 50 chr3 41415746 41416173 -186108405 - MER21B LTR ERV1 -435 428 1 22 35 0 0 chr3 41417558 41417587 -186106991 + AT_rich Low_complexity Low_complexity 1 29 0 306 292 24 23 chr3 41417744 41417881 -186106697 - L1P3 LINE L1 -368 5786 5647 196 272 184 0 chr3 41417935 41418038 -186106540 - MIR SINE MIR -66 142 21 203 367 11 0 chr3 41418816 41418906 -186105672 - L2 LINE L2 -239 3033 2943 2723 224 40 3 chr3 41419384 41420006 -186104572 - L1ME3 LINE L1 -4 6158 5514 30 0 0 0 chr3 41420562 41420592 -186103986 + AT_rich Low_complexity Low_complexity 1 30 0 4458 81 21 5 chr3 41420592 41421196 -186103382 - L1MA1 LINE L1 -10 6292 5679 850 170 13 156 chr3 41421296 41421390 -186103188 - L1MA1 LINE L1 -784 5362 5256 297 73 24 0 chr3 41421390 41421431 -186103147 + MADE1 DNA Mariner 1 42 -38 850 170 13 156 chr3 41421431 41421656 -186102922 - L1MA1 LINE L1 -890 5256 5042 1244 276 111 13 chr3 41421972 41422574 -186102004 - HAL1b LINE L1 -278 1070 410 506 270 127 51 chr3 41422922 41423231 -186101347 - L1MEc LINE L1 -4445 1802 1518 2149 185 26 24 chr3 41423231 41423648 -186100930 + LTR52 LTR ERVL 1 418 -3 506 270 127 51 chr3 41423648 41423789 -186100789 - L1MEc LINE L1 -4729 1518 1389 2083 126 0 10 chr3 41423789 41424083 -186100495 + AluSc SINE Alu 3 293 -16 506 270 127 51 chr3 41424083 41424561 -186100017 - L1MEc LINE L1 -4858 1389 806 302 261 11 43 chr3 41424808 41424900 -186099678 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr3 41425219 41425240 -186099338 + AT_rich Low_complexity Low_complexity 1 21 0 2072 144 7 0 chr3 41425240 41425545 -186099033 - AluSx SINE Alu -5 307 1 668 268 22 35 chr3 41426656 41426884 -186097694 + MIR SINE MIR 38 262 0 2211 115 3 3 chr3 41427345 41427657 -186096921 - AluSx SINE Alu 0 312 1 1892 128 16 46 chr3 41428860 41429166 -186095412 - AluJb SINE Alu -15 297 1 978 82 14 48 chr3 41429805 41429952 -186094626 + AluSc SINE Alu 160 301 -8 25 0 0 0 chr3 41429952 41429977 -186094601 + AT_rich Low_complexity Low_complexity 1 25 0 797 89 0 0 chr3 41430213 41430314 -186094264 + AluS SINE Alu 2 102 -210 784 68 38 0 chr3 41430316 41430449 -186094129 + (TA)n Simple_repeat Simple_repeat 2 139 0 1553 155 80 4 chr3 41430449 41430713 -186093865 - AluJb SINE Alu -28 284 1 1065 231 31 12 chr3 41430750 41431005 -186093573 + MIR SINE MIR 1 260 -2 691 252 56 56 chr3 41431014 41431316 -186093262 + L2 LINE L2 3008 3309 -4 181 0 33 33 chr3 41431798 41431828 -186092750 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 256 212 14 16 chr3 41432061 41432134 -186092444 - MLT1J2 LTR MaLR -7 428 326 345 287 37 15 chr3 41432326 41432462 -186092116 - MLT1J2 LTR MaLR -293 157 19 487 366 60 37 chr3 41432932 41433155 -186091423 - L2 LINE L2 -1 3271 3055 1150 103 0 27 chr3 41433155 41433340 -186091238 - L1MA8 LINE L1 -1 6290 6111 487 366 60 37 chr3 41433340 41433417 -186091161 - L2 LINE L2 -217 3055 2981 2219 107 17 0 chr3 41433417 41433717 -186090861 + AluSp SINE Alu 1 305 -8 487 366 60 37 chr3 41433717 41434122 -186090456 - L2 LINE L2 -291 2981 2553 1194 253 90 31 chr3 41434270 41434693 -186089885 + LTR16A1 LTR ERVL 1 448 -9 306 270 72 9 chr3 41435102 41435213 -186089365 + MIR3 SINE MIR 86 203 -5 411 113 0 0 chr3 41435251 41435313 -186089265 + (T)n Simple_repeat Simple_repeat 1 62 0 290 275 11 79 chr3 41435943 41436132 -186088446 + GA-rich Low_complexity Low_complexity 1 176 0 236 281 16 16 chr3 41436315 41436379 -186088199 - MIR SINE MIR -185 77 14 454 284 15 17 chr3 41436464 41436641 -186087937 + MIR SINE MIR 4 176 -62 184 285 185 25 chr3 41437400 41437600 -186086978 - MIR SINE MIR -2 260 29 233 326 121 23 chr3 41438229 41438361 -186086217 + L2 LINE L2 3085 3229 -43 844 165 94 24 chr3 41438666 41438836 -186085742 - MER5A DNA MER1_type 0 189 8 387 33 49 0 chr3 41439693 41439754 -186084824 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 320 312 32 51 chr3 41439799 41439956 -186084622 + HAL1 LINE L1 945 1098 -1409 242 326 34 0 chr3 41440509 41440598 -186083980 + MER94 DNA DNA 1 92 -42 683 279 24 90 chr3 41441427 41441760 -186082818 + MLT1I LTR MaLR 77 387 -22 229 197 0 56 chr3 41442526 41442597 -186081981 + G-rich Low_complexity Low_complexity 6 72 0 270 344 0 0 chr3 41442773 41442927 -186081651 + G-rich Low_complexity Low_complexity 1 154 0 765 85 0 0 chr3 41442973 41443079 -186081499 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 287 284 182 7 chr3 41443282 41443430 -186081148 + MIR3 SINE MIR 34 207 -1 674 264 90 15 chr3 41443935 41444315 -186080263 - MLT1J2 LTR MaLR -11 439 2 3050 108 32 0 chr3 41444955 41445392 -186079186 + L1MA3 LINE L1 5855 6305 0 220 204 19 37 chr3 41445861 41445915 -186078663 - MIR SINE MIR -190 72 20 533 86 0 12 chr3 41446009 41446090 -186078488 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 1860 143 43 3 chr3 41446094 41446394 -186078184 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 41446815 41446836 -186077742 + GC_rich Low_complexity Low_complexity 1 21 0 322 277 80 104 chr3 41448601 41448890 -186075688 - L2 LINE L2 -32 3240 2959 1082 273 111 12 chr3 41449703 41450109 -186074469 + MLT1J1 LTR MaLR 1 446 0 234 0 0 0 chr3 41450798 41450824 -186073754 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3570 96 27 7 chr3 41451399 41451960 -186072618 + L1PA13 LINE L1 5572 6143 -20 234 0 0 0 chr3 41453282 41453308 -186071270 + (T)n Simple_repeat Simple_repeat 1 26 0 323 267 216 23 chr3 41454195 41454371 -186070207 - MIR SINE MIR -50 212 3 442 245 44 13 chr3 41454906 41455064 -186069514 + MIR SINE MIR 69 230 -32 201 207 0 0 chr3 41457103 41457132 -186067446 + T-rich Low_complexity Low_complexity 1 29 0 709 254 69 43 chr3 41457268 41457618 -186066960 + LTR16A LTR ERVL 92 450 0 1780 235 92 57 chr3 41458147 41459080 -186065498 - HAL1 LINE L1 -866 1641 676 433 292 134 11 chr3 41459099 41459376 -186065202 - HAL1 LINE L1 -1898 609 299 2582 118 16 5 chr3 41459376 41459807 -186064771 - Tigger4(Zombi) DNA MER2_type 0 2731 2296 322 154 123 0 chr3 41459812 41459877 -186064701 - Tigger4(Zombi) DNA MER2_type -2658 73 1 657 231 106 97 chr3 41461743 41462224 -186062354 - MLT1H LTR MaLR -7 542 15 332 282 134 12 chr3 41462627 41462744 -186061834 + MIR SINE MIR 10 137 -71 183 227 23 23 chr3 41463232 41463276 -186061302 - MIR SINE MIR -149 59 16 225 183 0 0 chr3 41463425 41463485 -186061093 + (CA)n Simple_repeat Simple_repeat 1 60 0 391 253 120 27 chr3 41464196 41464346 -186060232 - MER5A DNA MER1_type -1 188 25 1811 110 0 0 chr3 41464380 41464616 -186059962 + AluSx SINE Alu 1 236 -76 1827 179 3 7 chr3 41464652 41464948 -186059630 - AluJo SINE Alu -17 295 1 237 255 0 0 chr3 41465019 41465070 -186059508 - MIR SINE MIR -126 136 86 800 195 67 0 chr3 41465271 41465466 -186059112 - L1MD3 LINE L1 -1 7994 7787 246 240 0 0 chr3 41465655 41465705 -186058873 + LTR16A1 LTR ERVL 3 52 -405 1123 189 122 50 chr3 41465779 41466139 -186058439 + LTR16A1 LTR ERVL 58 443 -14 1055 197 45 42 chr3 41467733 41468024 -186056554 + L1MA10 LINE L1 6024 6318 -16 2293 98 0 7 chr3 41468024 41468320 -186056258 - AluSp SINE Alu -19 294 1 1055 197 45 42 chr3 41468320 41468338 -186056240 + L1MA10 LINE L1 6318 6334 0 388 248 66 16 chr3 41469799 41469920 -186054658 + MIR SINE MIR 107 233 -29 923 200 33 0 chr3 41470121 41470301 -186054277 + MER5A DNA MER1_type 2 187 -2 429 217 7 20 chr3 41472740 41472892 -186051686 + CT-rich Low_complexity Low_complexity 1 150 0 369 0 0 0 chr3 41473614 41473655 -186050923 + (CA)n Simple_repeat Simple_repeat 1 41 0 472 269 87 39 chr3 41474129 41474337 -186050241 - HAL1 LINE L1 -2279 228 11 462 236 101 34 chr3 41474656 41474834 -186049744 - L1ME LINE L1 -369 5752 5563 317 377 85 11 chr3 41475806 41476087 -186048491 + L2 LINE L2 2404 2705 -609 228 268 85 0 chr3 41476099 41476181 -186048397 + HAL1 LINE L1 4 92 -2415 240 261 0 23 chr3 41476904 41476992 -186047586 + HAL1 LINE L1 821 906 -1601 2327 85 3 10 chr3 41477196 41477502 -186047076 - AluSg SINE Alu -6 304 1 33 0 0 0 chr3 41477624 41477657 -186046921 + AT_rich Low_complexity Low_complexity 1 33 0 563 264 133 58 chr3 41477843 41478240 -186046338 - L1ME3A LINE L1 -219 5951 5525 225 262 12 12 chr3 41478338 41478422 -186046156 - L1ME3A LINE L1 -1567 4579 4496 472 275 40 56 chr3 41479138 41479513 -186045065 - L1MC5 LINE L1 -54 7907 7539 743 266 183 12 chr3 41479635 41479826 -186044752 - L1MC4a LINE L1 -1640 6168 6011 450 0 0 0 chr3 41479826 41479876 -186044702 + (TG)n Simple_repeat Simple_repeat 1 50 0 743 266 183 12 chr3 41479876 41480192 -186044386 - L1MC4a LINE L1 -1797 6011 5574 279 0 0 0 chr3 41481044 41481075 -186043503 + (TAA)n Simple_repeat Simple_repeat 1 31 0 385 253 58 89 chr3 41481296 41481486 -186043092 - MLT1H LTR MaLR -343 206 23 278 340 56 23 chr3 41481551 41481768 -186042810 - MIR3 SINE MIR -26 236 2 12659 197 39 12 chr3 41483145 41486392 -186038186 - L1 LINE L1 -821 6346 3009 300 198 19 38 chr3 41486404 41486510 -186038068 + CT-rich Low_complexity Low_complexity 1 104 0 1980 173 3 0 chr3 41486520 41486827 -186037751 - AluSx SINE Alu -2 310 3 1653 265 65 59 chr3 41487386 41487702 -186036876 - L1 LINE L1 -4158 3010 2697 896 116 0 7 chr3 41487702 41487848 -186036730 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 2235 90 0 0 chr3 41487848 41488127 -186036451 - AluY SINE Alu -32 279 1 1653 265 65 59 chr3 41488127 41489253 -186035325 - L1 LINE L1 -4470 2698 1617 322 387 6 17 chr3 41490184 41490357 -186034221 - L1 LINE L1 -5970 1128 958 480 308 137 22 chr3 41490543 41490865 -186033713 + MLT1J LTR MaLR 110 468 -43 347 336 16 0 chr3 41491513 41491641 -186032937 + L2 LINE L2 2581 2710 -604 4998 152 37 10 chr3 41491643 41492644 -186031934 + L1MA7 LINE L1 5261 6288 -3 268 319 74 42 chr3 41492801 41493017 -186031561 + L2 LINE L2 2992 3214 -58 182 342 13 13 chr3 41494117 41494193 -186030385 - L3b LINE CR1 -180 1403 1328 470 291 67 56 chr3 41494524 41494792 -186029786 - HAL1b LINE L1 -46 1302 1032 611 289 76 36 chr3 41494792 41495148 -186029430 - HAL1b LINE L1 -596 752 383 2091 251 72 11 chr3 41495790 41496455 -186028123 - L1ME3A LINE L1 -11 6159 5454 410 252 140 0 chr3 41498130 41498273 -186026305 - MLT1L LTR MaLR -311 304 142 239 186 18 71 chr3 41498474 41498587 -186025991 + (TTATA)n Simple_repeat Simple_repeat 5 111 0 199 257 122 27 chr3 41501008 41501082 -186023496 + L2 LINE L2 3161 3241 -31 523 230 175 5 chr3 41502458 41502658 -186021920 - LTR16A1 LTR ERVL 0 457 224 382 316 138 13 chr3 41503166 41503391 -186021187 - L3 LINE CR1 -60 1517 1265 188 341 71 12 chr3 41503780 41503865 -186020713 + MIR SINE MIR 27 116 -92 653 329 101 10 chr3 41503984 41504568 -186020010 - L2 LINE L2 -1142 2172 1536 766 214 10 36 chr3 41506100 41506292 -186018286 - MER5A DNA MER1_type -1 188 2 2054 151 13 53 chr3 41507089 41507538 -186017040 + LTR23 LTR ERV1 7 437 0 1764 263 44 5 chr3 41507941 41508507 -186016071 - L1ME3A LINE L1 -11 6159 5572 2141 119 0 13 chr3 41508523 41508825 -186015753 + AluSx SINE Alu 1 298 -14 640 313 93 48 chr3 41508889 41508983 -186015595 + L1MC4a LINE L1 5190 5278 -892 757 309 4 0 chr3 41508983 41509239 -186015339 - MIR SINE MIR -4 258 2 640 313 93 48 chr3 41509239 41509848 -186014730 + L1MC4a LINE L1 5278 5809 -361 2123 118 3 0 chr3 41509958 41510255 -186014323 - AluSx SINE Alu -14 298 1 1820 123 0 4 chr3 41510332 41510584 -186013994 - AluSc SINE Alu -15 294 44 23 33 0 0 chr3 41510895 41510925 -186013653 + AT_rich Low_complexity Low_complexity 1 30 0 1449 211 109 32 chr3 41511141 41511616 -186012962 + MLT1H LTR MaLR 1 512 -37 265 155 52 35 chr3 41511663 41511837 -186012741 + (TA)n Simple_repeat Simple_repeat 2 178 0 1045 174 5 14 chr3 41511837 41512050 -186012528 - L1MA8 LINE L1 -105 6186 5976 347 328 104 25 chr3 41512111 41512352 -186012226 + HAL1b LINE L1 515 774 -574 3532 160 65 9 chr3 41513891 41514661 -186009917 - L1MA8 LINE L1 -4 6287 5475 269 285 77 46 chr3 41515159 41515289 -186009289 + MIR SINE MIR 18 151 -111 1292 211 63 41 chr3 41516405 41516817 -186007761 + L1ME3A LINE L1 5748 6168 -2 283 286 144 38 chr3 41517146 41517569 -186007009 + HAL1 LINE L1 1211 1678 -829 232 231 62 15 chr3 41519553 41519618 -186004960 + MIR SINE MIR 119 186 -76 277 327 30 42 chr3 41520697 41520862 -186003716 - MLT1J2 LTR MaLR -25 425 263 552 291 0 0 chr3 41521544 41521692 -186002886 + MER117 DNA MER1_type 24 171 -26 665 310 74 25 chr3 41522112 41522596 -186001982 + LTR33 LTR ERVL 14 521 0 34 24 0 0 chr3 41522997 41523038 -186001540 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr3 41523347 41523368 -186001210 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 41524169 41524192 -186000386 + AT_rich Low_complexity Low_complexity 1 23 0 6395 83 4 65 chr3 41524611 41525423 -185999155 + L1MA2 LINE L1 5219 5944 -360 2469 122 19 3 chr3 41525423 41525792 -185998786 + THE1C LTR MaLR 1 375 0 6395 83 4 65 chr3 41525792 41526123 -185998455 + L1MA2 LINE L1 5944 6294 -10 725 206 29 6 chr3 41528314 41528484 -185996094 - MSTD LTR MaLR -3 393 220 24 0 0 0 chr3 41528827 41528851 -185995727 + AT_rich Low_complexity Low_complexity 1 24 0 325 328 169 28 chr3 41529316 41529676 -185994902 + L1M4 LINE L1 3690 4100 -2046 231 331 141 0 chr3 41530253 41530374 -185994204 + MIR SINE MIR 2 139 -123 207 267 56 0 chr3 41530462 41530552 -185994026 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 23 33 0 0 chr3 41530695 41530725 -185993853 + AT_rich Low_complexity Low_complexity 1 30 0 227 175 18 35 chr3 41530872 41530929 -185993649 - MLT1J1 LTR MaLR -36 410 355 324 265 0 12 chr3 41531031 41531114 -185993464 - MLT1J2 LTR MaLR -302 148 67 201 39 0 0 chr3 41532699 41532725 -185991853 + (CA)n Simple_repeat Simple_repeat 1 26 0 1058 213 77 0 chr3 41533752 41533959 -185990619 - MER58A DNA MER1_type -1 223 1 451 330 134 14 chr3 41534089 41534298 -185990280 - MIR SINE MIR -26 236 3 917 254 60 58 chr3 41534844 41535148 -185989430 - L1ME2 LINE L1 -283 5881 5574 1542 208 7 3 chr3 41535148 41535432 -185989146 + AluJb SINE Alu 3 287 -25 917 254 60 58 chr3 41535432 41535596 -185988982 - L1ME2 LINE L1 -590 5574 5412 218 378 0 10 chr3 41535874 41535972 -185988606 + MIR SINE MIR 58 154 -108 321 242 22 11 chr3 41536452 41536543 -185988035 + MIR SINE MIR 156 247 -15 268 293 170 0 chr3 41537527 41537633 -185986945 - L2 LINE L2 -10 3262 3139 207 267 367 0 chr3 41538293 41538413 -185986165 - L2 LINE L2 -8 3264 3101 912 273 37 20 chr3 41538530 41538878 -185985700 - LTR16C LTR ERVL -5 486 133 268 281 58 41 chr3 41539670 41539791 -185984787 + MIR SINE MIR 106 228 -34 2990 142 36 17 chr3 41540343 41540864 -185983714 - LTR26B LTR ERV1 0 531 1 222 378 107 18 chr3 41541059 41541284 -185983294 + L2 LINE L2 2864 3108 -164 547 234 94 42 chr3 41541376 41541691 -185982887 + MLT1J2 LTR MaLR 67 448 -2 190 297 110 34 chr3 41542420 41542538 -185982040 - MIR SINE MIR -54 208 82 383 226 9 85 chr3 41543270 41543409 -185981169 + MIR SINE MIR 7 138 -70 428 229 130 0 chr3 41544143 41544274 -185980304 + MLT1E1 LTR MaLR 1 148 -506 323 221 13 0 chr3 41544402 41544479 -185980099 + MLT1E3 LTR MaLR 547 624 0 814 232 16 11 chr3 41545213 41545398 -185979180 - MER5A DNA MER1_type -2 187 2 514 317 107 10 chr3 41546371 41546576 -185978002 - MIR SINE MIR -4 258 34 1434 182 72 43 chr3 41546632 41547006 -185977572 + MLT1B LTR MaLR 1 385 -5 274 156 0 143 chr3 41547343 41547420 -185977158 + MLT1H LTR MaLR 481 546 -3 434 220 50 71 chr3 41547636 41547777 -185976801 + MIR SINE MIR 20 157 -105 225 299 6 128 chr3 41548189 41548353 -185976225 + MIR SINE MIR 84 227 -35 378 308 9 0 chr3 41548394 41548501 -185976077 - MIR3 SINE MIR -46 162 55 525 286 130 44 chr3 41548596 41548911 -185975667 - L3 LINE CR1 -2 1575 1234 250 191 113 113 chr3 41549139 41549307 -185975271 - L2 LINE L2 -54 3259 3092 2340 105 20 8 chr3 41549663 41550014 -185974564 + THE1A LTR MaLR 1 355 0 11107 98 29 1 chr3 41550014 41551551 -185973027 + THE1A-int LTR MaLR 1 1580 0 2211 136 8 8 chr3 41551553 41551906 -185972672 + THE1A LTR MaLR 3 355 0 243 135 0 0 chr3 41552333 41552370 -185972208 + MLT1I LTR MaLR 101 137 -272 1139 110 13 0 chr3 41552389 41552544 -185972034 - AluSq SINE Alu -109 204 48 1424 238 95 66 chr3 41554674 41555449 -185969129 + L2 LINE L2 2499 3306 -7 375 351 0 12 chr3 41555447 41555571 -185969007 - MIR SINE MIR -85 123 3 * 237 135 0 0 chr3 41556174 41556226 -185968352 + (TA)n Simple_repeat Simple_repeat 2 53 0 736 245 241 10 chr3 41556286 41556638 -185967940 + MLT1G1 LTR MaLR 77 558 -37 307 287 90 27 chr3 41556868 41557091 -185967487 - LTR16A1 LTR ERVL -220 237 1 2112 159 55 26 chr3 41559129 41559545 -185965033 + MSTC LTR MaLR 1 428 0 251 140 20 0 chr3 41559585 41559635 -185964943 + CT-rich Low_complexity Low_complexity 3 53 0 218 337 180 22 chr3 41559982 41560383 -185964195 - L2 LINE L2 -957 2357 1894 971 288 154 17 chr3 41561141 41561499 -185963079 + L2 LINE L2 2901 3307 -6 282 353 23 30 chr3 41561790 41561923 -185962655 - MIR3 SINE MIR -14 194 63 629 344 100 31 chr3 41562483 41562757 -185961821 + L2 LINE L2 1801 2055 -1259 408 281 111 96 chr3 41562757 41563298 -185961280 + MLT1H LTR MaLR 1 549 0 629 344 100 31 chr3 41563298 41563800 -185960778 + L2 LINE L2 2055 2631 -683 24 0 0 0 chr3 41563881 41563905 -185960673 + AT_rich Low_complexity Low_complexity 1 24 0 249 279 80 43 chr3 41563964 41564240 -185960338 - L1MEd LINE L1 -3519 3329 3044 241 277 0 0 chr3 41564341 41564424 -185960154 - L1MEd LINE L1 -3961 2888 2806 25 0 0 0 chr3 41564879 41564904 -185959674 + AT_rich Low_complexity Low_complexity 1 25 0 407 261 98 62 chr3 41564939 41565699 -185958879 - L1MEd LINE L1 -4703 2326 1504 352 296 26 40 chr3 41565702 41565854 -185958724 + MIR SINE MIR 113 262 0 719 310 41 35 chr3 41565917 41566311 -185958267 - L1MEd LINE L1 -5396 1442 1047 923 256 30 0 chr3 41566505 41566708 -185957870 - MER58A DNA MER1_type -15 209 1 344 258 41 31 chr3 41568407 41568504 -185956074 + MIR SINE MIR 29 126 -136 253 329 19 19 chr3 41568573 41568786 -185955792 - L1M4 LINE L1 -3595 2551 2339 222 91 0 0 chr3 41568806 41568839 -185955739 + (CA)n Simple_repeat Simple_repeat 2 34 0 709 295 73 54 chr3 41569565 41570125 -185954453 + L1MEd LINE L1 527 1097 -5022 4511 137 8 16 chr3 41570632 41571423 -185953155 - L1MA4A LINE L1 -6 6999 6216 3596 135 2 14 chr3 41571423 41572008 -185952570 + L1PB3 LINE L1 5575 6152 -2 8528 185 120 15 chr3 41572012 41574511 -185950067 - L1MA4A LINE L1 -743 6105 3456 6106 176 47 159 chr3 41574507 41574862 -185949716 - L1MA4A LINE L1 -4812 2037 1644 * 231 103 0 0 chr3 41574862 41574901 -185949677 + (TG)n Simple_repeat Simple_repeat 2 40 0 6106 176 47 159 chr3 41574901 41576835 -185947743 - L1MA4A LINE L1 -5205 1644 4 549 168 124 124 chr3 41576896 41577170 -185947408 - ORSL DNA AcHobo -1 274 1 706 279 63 35 chr3 41577184 41577499 -185947079 - LTR16C LTR ERVL 0 491 168 313 379 12 12 chr3 41577886 41578047 -185946531 + MIR3 SINE MIR 21 181 -27 375 339 79 31 chr3 41578084 41578338 -185946240 - L2 LINE L2 -5 3267 3002 255 330 19 38 chr3 41579739 41579845 -185944733 - MIR SINE MIR -80 128 25 519 280 71 48 chr3 41580163 41580660 -185943918 - MLT1G LTR MaLR -6 549 25 245 349 89 36 chr3 41580807 41581088 -185943490 - L2 LINE L2 -384 2930 2635 5028 137 17 2 chr3 41581107 41581935 -185942643 + L1PA15 LINE L1 5322 6161 -4 599 207 75 48 chr3 41581993 41582181 -185942397 + MIR SINE MIR 3 195 -67 236 293 198 0 chr3 41582174 41582290 -185942288 + L2 LINE L2 3175 3313 0 * 420 261 9 132 chr3 41582317 41582666 -185941912 + L1MC4a LINE L1 5624 5929 -1879 210 244 0 0 chr3 41582666 41582711 -185941867 + (TATG)n Simple_repeat Simple_repeat 4 48 0 361 274 83 30 chr3 41583285 41583453 -185941125 - MIR SINE MIR -21 241 65 336 291 30 70 chr3 41583495 41583694 -185940884 - MIR3 SINE MIR 0 208 18 1357 203 21 7 chr3 41584139 41584429 -185940149 + MLT1E1 LTR MaLR 2 295 -359 955 222 65 0 chr3 41584449 41584679 -185939899 + MLT1E1 LTR MaLR 410 654 0 3660 32 2 0 chr3 41584838 41585276 -185939302 + L1PA4 LINE L1 5714 6152 -3 371 336 25 18 chr3 41585425 41585580 -185938998 + MIR SINE MIR 3 155 -61 205 191 0 0 chr3 41586040 41586082 -185938496 + A-rich Low_complexity Low_complexity 2 43 0 273 289 74 25 chr3 41586631 41586752 -185937826 + MIR3 SINE MIR 82 208 0 4238 92 1 94 chr3 41586802 41587534 -185937044 + MER4A LTR ERV1 1 664 0 216 200 0 0 chr3 41588214 41588264 -185936314 + GA-rich Low_complexity Low_complexity 2 51 0 922 257 88 16 chr3 41588608 41588927 -185935651 - LTR16C LTR ERVL -1 490 149 337 282 54 20 chr3 41589569 41589718 -185934860 - MIR SINE MIR -108 154 1 424 254 92 21 chr3 41590303 41590445 -185934133 - L2 LINE L2 -1 3312 3161 231 170 0 0 chr3 41590694 41590741 -185933837 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 261 0 0 chr3 41591257 41591322 -185933256 - MIR SINE MIR -11 251 187 293 229 0 31 chr3 41592119 41592215 -185932363 + (CATA)n Simple_repeat Simple_repeat 2 94 0 279 242 172 20 chr3 41592899 41592998 -185931580 + MIR3 SINE MIR 15 128 -80 663 237 11 59 chr3 41593041 41593227 -185931351 + MLT1D LTR MaLR 1 177 -328 7844 16 0 0 chr3 41593242 41594429 -185930149 - L1PA2 LINE L1 0 6155 4969 32859 55 2 1 chr3 41594531 41598888 -185925690 - L1P LINE L1 -1784 4362 1 1563 157 17 24 chr3 41598892 41599185 -185925393 + L1PA13 LINE L1 5865 6155 -8 926 178 29 6 chr3 41599195 41599369 -185925209 + MLT1D LTR MaLR 326 503 -2 206 343 65 28 chr3 41600097 41600205 -185924373 - MIR SINE MIR -149 113 2 362 322 54 42 chr3 41600740 41600979 -185923599 + MIR SINE MIR 10 251 -11 2441 100 0 0 chr3 41601150 41601460 -185923118 - AluSx SINE Alu -2 310 1 2207 118 0 0 chr3 41601848 41602137 -185922441 - AluSg SINE Alu -21 289 1 205 247 191 11 chr3 41602664 41602753 -185921825 - L2 LINE L2 -17 3255 3151 21 0 0 0 chr3 41602829 41602850 -185921728 + AT_rich Low_complexity Low_complexity 1 21 0 304 330 181 6 chr3 41603095 41603277 -185921301 - MIR SINE MIR -17 245 32 * 307 244 0 7 chr3 41603272 41603344 -185921234 + MIR SINE MIR 95 148 -60 188 299 174 48 chr3 41604347 41604514 -185920064 - MIR SINE MIR -10 252 65 665 255 53 103 chr3 41605360 41605902 -185918676 + L1MC4 LINE L1 6647 7161 -800 6799 199 42 39 chr3 41605928 41608799 -185915779 - L1MA10 LINE L1 0 6222 3367 19355 186 21 14 chr3 41608803 41610875 -185913703 - L1PA12 LINE L1 -2 7604 5548 1791 165 147 26 chr3 41610875 41611257 -185913321 + MSTA LTR MaLR 1 428 0 19355 186 21 14 chr3 41611257 41615957 -185908621 - L1PA12 LINE L1 -2058 5548 1 1078 206 36 0 chr3 41616003 41616280 -185908298 - L1MA10 LINE L1 -2656 3378 3092 3690 163 50 8 chr3 41616296 41617034 -185907544 - L1MA4A LINE L1 -23 6982 6214 5881 192 26 6 chr3 41617601 41618930 -185905648 - L1MA4A LINE L1 -814 6034 4679 * 6191 77 14 16 chr3 41618928 41619841 -185904737 - L1PA8 LINE L1 -5 6167 5257 1901 192 14 33 chr3 41619836 41619988 -185904590 - L1MA4A LINE L1 -2158 4690 4537 * 2398 82 0 0 chr3 41619988 41620282 -185904296 - AluY SINE Alu -17 294 1 1901 192 14 33 chr3 41620282 41620567 -185904011 - L1MA4A LINE L1 -2311 4537 4260 2607 98 40 21 chr3 41620567 41620996 -185903582 - L1MA1 LINE L1 0 6302 5866 1901 192 14 33 chr3 41620996 41621041 -185903537 - L1MA4A LINE L1 -2588 4260 4216 5269 215 23 36 chr3 41621041 41622305 -185902273 - L1MA4A LINE L1 -4896 1953 706 2809 273 75 27 chr3 41622318 41625939 -185898639 - L1MA10 LINE L1 -2942 3092 11 230 135 0 0 chr3 41625952 41625989 -185898589 + L1MC5 LINE L1 7173 7209 -752 355 282 89 8 chr3 41626143 41626267 -185898311 + L1MC5 LINE L1 7270 7403 -558 933 278 39 66 chr3 41626396 41626565 -185898013 + MLT1H LTR MaLR 68 240 -355 1676 181 24 0 chr3 41626565 41626857 -185897721 - AluJo SINE Alu -13 299 1 933 278 39 66 chr3 41626857 41627181 -185897397 + MLT1H LTR MaLR 240 595 0 425 37 0 0 chr3 41627426 41627521 -185897057 + L1PA4 LINE L1 6089 6155 0 4563 151 19 3 chr3 41627521 41628993 -185895585 - L1PA14 LINE L1 -297 5864 4379 910 253 93 27 chr3 41629013 41629314 -185895264 - MLT1D LTR MaLR -175 330 10 562 211 0 0 chr3 41629357 41629466 -185895112 - MLT1D LTR MaLR -396 109 1 382 311 15 8 chr3 41629516 41629648 -185894930 + MIR SINE MIR 74 206 -56 1814 179 42 6 chr3 41629700 41630036 -185894542 + MER7A DNA MER2_type 1 346 0 263 290 48 10 chr3 41630036 41630175 -185894403 - MLT1J2 LTR MaLR -2 444 300 299 306 31 0 chr3 41630201 41630299 -185894279 - MLT1J2 LTR MaLR -209 241 141 331 236 34 11 chr3 41630312 41630401 -185894177 - MLT1J1 LTR MaLR -355 91 1 428 313 192 31 chr3 41630665 41631300 -185893278 - L2 LINE L2 -1003 2311 1575 22 56 0 0 chr3 41631643 41631679 -185892899 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 41631827 41631856 -185892722 + AT_rich Low_complexity Low_complexity 1 29 0 560 319 29 21 chr3 41632242 41632480 -185892098 + L2 LINE L2 3074 3313 0 322 333 0 17 chr3 41632805 41632925 -185891653 - L2 LINE L2 0 3313 3196 277 308 165 0 chr3 41632962 41633095 -185891483 + L2 LINE L2 3117 3271 -1 340 268 24 47 chr3 41633249 41633376 -185891202 - MIR SINE MIR -2 260 137 215 345 0 0 chr3 41633978 41634036 -185890542 + MIR SINE MIR 53 110 -152 2177 145 53 13 chr3 41634049 41634443 -185890135 - MSTA LTR MaLR 0 428 19 180 125 0 0 chr3 41634774 41634806 -185889772 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 225 310 178 47 chr3 41634914 41635043 -185889535 + L2 LINE L2 3127 3272 0 25072 44 40 2 chr3 41635818 41639157 -185885421 - L1P LINE L1 -2681 3465 1 635 240 208 8 chr3 41639185 41639435 -185885143 + MLT1D LTR MaLR 191 490 -15 215 306 174 50 chr3 41640174 41640295 -185884283 - L2 LINE L2 0 3272 3137 2121 92 9 0 chr3 41640617 41640944 -185883634 + L1P LINE L1 1179 1508 -4638 * 12362 23 0 0 chr3 41640937 41642447 -185882131 + L1P LINE L1 3447 4956 -1190 5835 58 5 3 chr3 41642551 41643509 -185881069 - L1PA4 LINE L1 -144 6011 5051 23 54 0 0 chr3 41643649 41643686 -185880892 + GC_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 41643881 41643904 -185880674 + GC_rich Low_complexity Low_complexity 1 23 0 1733 224 13 34 chr3 41644035 41644478 -185880100 + MLT1E3 LTR MaLR 233 624 0 27 89 0 0 chr3 41645132 41645177 -185879401 + GC_rich Low_complexity Low_complexity 1 45 0 439 249 53 34 chr3 41645440 41645649 -185878929 + L1MC5 LINE L1 7714 7926 -35 22 0 0 0 chr3 41646337 41646359 -185878219 + AT_rich Low_complexity Low_complexity 1 22 0 212 370 58 0 chr3 41646440 41646594 -185877984 - MIR SINE MIR -9 253 91 5660 65 5 3 chr3 41648468 41649228 -185875350 - L1PA7 LINE L1 -3 6151 5390 252 0 0 0 chr3 41649228 41649256 -185875322 + (TTA)n Simple_repeat Simple_repeat 3 30 0 28749 89 20 6 chr3 41649256 41655290 -185869288 - L1PA6 LINE L1 -18 6136 2 6257 98 2 0 chr3 41655292 41656242 -185868336 - L1P LINE L1 -749 5397 4446 366 279 61 34 chr3 41656261 41656408 -185868170 + MIR3 SINE MIR 55 205 -3 578 296 32 8 chr3 41656511 41656764 -185867814 + L1ME LINE L1 5521 5779 -391 2519 207 24 0 chr3 41657104 41657678 -185866900 - L1MB7 LINE L1 -217 5967 5380 22 0 0 0 chr3 41657706 41657728 -185866850 + AT_rich Low_complexity Low_complexity 1 22 0 4410 176 23 32 chr3 41657739 41658706 -185865872 - L1MA7 LINE L1 -10 6281 5324 609 164 0 29 chr3 41658711 41658815 -185865763 - FRAM SINE Alu -24 152 52 475 205 5 146 chr3 41659208 41659413 -185865165 + MER51C LTR ERV1 453 628 -12 342 77 92 31 chr3 41659422 41659487 -185865091 + MER51C-int LTR ERV1 1 69 -7747 2002 131 3 16 chr3 41659702 41660007 -185864571 - AluSx SINE Alu -11 301 1 295 135 21 146 chr3 41660277 41660373 -185864205 + MER51C-int LTR ERV1 698 781 -7035 * 304 345 23 0 chr3 41660371 41660545 -185864033 + PRIMA41-int LTR ERV1 2643 2820 -4936 5733 178 30 14 chr3 41660745 41662000 -185862578 - L1MA7 LINE L1 -1185 4961 3688 3262 199 61 150 chr3 41662005 41663150 -185861428 - L1MB7 LINE L1 -768 5378 4331 894 220 18 0 chr3 41663150 41663318 -185861260 + AluJb SINE Alu 133 303 -9 3262 199 61 150 chr3 41663318 41664151 -185860427 - L1MB7 LINE L1 -1815 4331 3425 25 0 0 0 chr3 41664189 41664214 -185860364 + AT_rich Low_complexity Low_complexity 1 25 0 310 157 14 14 chr3 41664260 41664330 -185860248 + CT-rich Low_complexity Low_complexity 1 70 0 435 313 44 53 chr3 41664331 41664472 -185860106 - L2 LINE L2 -13 3300 3160 252 59 0 0 chr3 41664472 41664506 -185860072 + (CA)n Simple_repeat Simple_repeat 2 35 0 435 313 44 53 chr3 41664506 41664591 -185859987 - L2 LINE L2 -153 3160 3076 23 0 0 0 chr3 41664803 41664826 -185859752 + AT_rich Low_complexity Low_complexity 1 23 0 387 300 253 17 chr3 41666006 41666239 -185858339 - L3 LINE CR1 -88 1489 1202 1680 104 9 0 chr3 41667504 41667724 -185856854 - AluSg/x SINE Alu -24 288 67 947 274 104 40 chr3 41667901 41668306 -185856272 - LTR16A1 LTR ERVL 0 457 27 2184 127 0 13 chr3 41668607 41668921 -185855657 - AluSx SINE Alu -2 310 1 424 118 153 12 chr3 41668921 41668980 -185855598 + L1MA9 LINE L1 6093 6169 -143 216 67 0 0 chr3 41668980 41669010 -185855568 + (CA)n Simple_repeat Simple_repeat 1 30 0 424 118 153 12 chr3 41669010 41669035 -185855543 + L1MA9 LINE L1 6169 6189 -123 191 263 158 12 chr3 41669148 41669269 -185855309 - MIR SINE MIR -58 150 17 2395 82 0 0 chr3 41669894 41670186 -185854392 + AluY SINE Alu 1 292 -19 292 264 124 0 chr3 41670326 41670455 -185854123 + Charlie7 DNA MER1_type 331 475 -2137 1590 219 41 0 chr3 41670465 41670831 -185853747 - L1PA16 LINE L1 -1 6165 5785 276 239 0 15 chr3 41670833 41670900 -185853678 + (TA)n Simple_repeat Simple_repeat 2 67 0 2689 174 36 32 chr3 41670900 41672006 -185852572 - L1PA16 LINE L1 -364 5792 4670 229 221 91 13 chr3 41672186 41672263 -185852315 + LTR16A1 LTR ERVL 223 305 -152 355 266 177 0 chr3 41672360 41672484 -185852094 + MIR SINE MIR 85 230 -32 786 249 62 97 chr3 41672854 41673319 -185851259 - LTR16A1 LTR ERVL -2 455 7 632 167 84 9 chr3 41673448 41673663 -185850915 - Charlie5 DNA MER1_type 0 2620 2390 229 309 89 41 chr3 41673849 41673972 -185850606 + MIR SINE MIR 23 151 -111 593 219 0 39 chr3 41674260 41674388 -185850190 - FLAM_A SINE Alu -10 123 1 206 257 40 40 chr3 41674441 41674515 -185850063 - MIR3 SINE MIR -12 196 123 621 130 38 8 chr3 41675045 41675176 -185849402 - Charlie5 DNA MER1_type -27 2585 2451 783 261 32 9 chr3 41676529 41676747 -185847831 + MER58A DNA MER1_type 1 223 -1 777 251 130 0 chr3 41676758 41677005 -185847573 - LTR16C LTR ERVL 0 491 213 701 246 50 61 chr3 41677457 41677734 -185846844 - MLT1H LTR MaLR -257 292 19 1603 110 5 0 chr3 41677883 41678092 -185846486 - AluSc SINE Alu -94 215 6 340 135 56 8 chr3 41678259 41678385 -185846193 + (TA)n Simple_repeat Simple_repeat 1 132 0 242 305 59 69 chr3 41679512 41679715 -185844863 - L2 LINE L2 -96 3176 2976 796 277 60 8 chr3 41679973 41680208 -185844370 - MIR SINE MIR -15 247 1 3265 308 112 35 chr3 41680262 41680667 -185843911 - L2 LINE L2 -12 3301 2929 2305 114 3 0 chr3 41680667 41680973 -185843605 + AluSp SINE Alu 1 307 -6 3265 308 112 35 chr3 41680973 41681110 -185843468 - L2 LINE L2 -384 2929 2804 1958 121 4 0 chr3 41681110 41681383 -185843195 - AluY SINE Alu -5 306 33 3265 308 112 35 chr3 41681383 41682931 -185841647 - L2 LINE L2 -509 2804 1039 243 299 15 15 chr3 41683156 41683223 -185841355 - L2 LINE L2 -9 3304 3238 305 352 99 58 chr3 41683437 41684003 -185840575 - L2 LINE L2 -340 2974 2386 978 298 63 19 chr3 41684028 41684457 -185840121 + MLT1J2 LTR MaLR 1 448 -2 191 298 226 44 chr3 41684787 41685216 -185839362 - L2 LINE L2 -1457 1857 1351 884 216 53 5 chr3 41685788 41685996 -185838582 - MER20 DNA MER1_type -1 218 1 437 238 57 29 chr3 41688282 41688492 -185836086 - MER69 DNA AcHobo -1 2525 2310 204 226 0 0 chr3 41688534 41688587 -185835991 + (TA)n Simple_repeat Simple_repeat 1 53 0 2648 259 100 33 chr3 41688647 41689639 -185834939 - MER69 DNA AcHobo -1460 1066 9 491 154 0 19 chr3 41689702 41689806 -185834772 + (TTCA)n Simple_repeat Simple_repeat 3 104 0 2172 101 0 7 chr3 41689916 41690204 -185834374 + AluSg SINE Alu 21 306 -4 2476 69 7 0 chr3 41691028 41691334 -185833244 - AluY SINE Alu -3 308 1 272 281 31 10 chr3 41692215 41692311 -185832267 - MER58C DNA MER1_type -6 209 112 182 207 17 0 chr3 41692329 41692387 -185832191 + CT-rich Low_complexity Low_complexity 3 61 0 415 291 24 0 chr3 41692400 41692527 -185832051 - MER58C DNA MER1_type -85 130 1 247 276 79 0 chr3 41692678 41692754 -185831824 - MIR SINE MIR -79 183 102 891 354 78 20 chr3 41692833 41693445 -185831133 - L2 LINE L2 -267 3046 2395 481 302 206 0 chr3 41693687 41693876 -185830702 + MIR SINE MIR 11 238 -24 231 232 11 21 chr3 41693891 41693986 -185830592 + CT-rich Low_complexity Low_complexity 2 95 0 1730 182 7 0 chr3 41694410 41694701 -185829877 - AluJo SINE Alu -8 304 12 5428 35 23 13 chr3 41695630 41696315 -185828263 - L1PA4 LINE L1 -1 6154 5463 331 294 103 57 chr3 41697017 41697211 -185827367 - MIR SINE MIR -3 259 57 902 314 124 33 chr3 41698251 41699192 -185825386 + L2 LINE L2 2264 3297 -16 896 170 0 12 chr3 41699197 41699362 -185825216 + L1PA16 LINE L1 6003 6165 -1 267 343 75 33 chr3 41699427 41699640 -185824938 - MIR SINE MIR -11 251 30 434 293 58 0 chr3 41700151 41700219 -185824359 + L1M4c LINE L1 1276 1339 -5045 1505 137 30 7 chr3 41700219 41700489 -185824089 + L1PA16 LINE L1 5888 6163 -3 434 293 58 0 chr3 41700489 41700611 -185823967 + L1M4c LINE L1 1339 1477 -4907 1495 247 81 36 chr3 41700662 41701193 -185823385 - MLT1E3 LTR MaLR 0 624 70 307 196 216 21 chr3 41701296 41701393 -185823185 + L1ME LINE L1 5703 5818 -346 501 245 264 19 chr3 41701405 41701617 -185822961 - L2 LINE L2 -2498 816 553 1553 110 252 139 chr3 41701621 41702286 -185822292 - LTR12 LTR ERV1 -133 2032 57 231 231 0 0 chr3 41702286 41702338 -185822240 - LTR30 LTR ERV1 -670 52 1 3675 99 4 0 chr3 41702338 41702871 -185821707 - HERV9 LTR ERV1 0 8399 7865 1830 103 13 32 chr3 41702868 41703651 -185820927 - HERV9 LTR ERV1 -5202 1694 711 * 1181 128 11 0 chr3 41703652 41703839 -185820739 - HERV9 LTR ERV1 -3455 4944 4756 * 19474 97 12 6 chr3 41703838 41706788 -185817790 - HERV9 LTR ERV1 -5427 2972 1 4312 85 172 42 chr3 41706788 41707519 -185817059 - LTR12 LTR ERV1 0 826 1 33 0 0 0 chr3 41709287 41709320 -185815258 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr3 41710484 41710511 -185814067 + (T)n Simple_repeat Simple_repeat 1 27 0 215 133 80 0 chr3 41710991 41711066 -185813512 + (TA)n Simple_repeat Simple_repeat 1 81 0 695 221 55 44 chr3 41711353 41711534 -185813044 - MER63A DNA MER1_type -9 201 19 298 309 193 34 chr3 41711712 41712007 -185812571 - L2 LINE L2 -337 2977 2636 452 281 23 41 chr3 41712165 41712336 -185812242 - L2 LINE L2 -940 2374 2207 355 311 48 30 chr3 41712346 41712513 -185812065 - L2 LINE L2 -1065 2249 2080 6295 146 19 2 chr3 41712599 41713616 -185810962 + Tigger1 DNA MER2_type 1385 2418 0 312 289 64 45 chr3 41714124 41714436 -185810142 + L1M4 LINE L1 3390 3707 -2439 397 303 124 11 chr3 41714696 41714874 -185809704 - MIR SINE MIR -34 228 31 1070 268 89 66 chr3 41716985 41717377 -185807201 - MLT1H LTR MaLR -104 445 45 1665 222 40 31 chr3 41717689 41718135 -185806443 + LTR16A1 LTR ERVL 8 457 0 241 373 151 19 chr3 41718719 41719030 -185805548 + L2 LINE L2 2622 2973 -341 899 205 5 0 chr3 41719465 41719650 -185804928 - L1 LINE L1 -2157 3989 3804 * 1188 216 8 0 chr3 41719646 41719891 -185804687 + L1MA9 LINE L1 4645 4891 -1255 632 212 15 0 chr3 41719888 41720025 -185804553 + L1MA9 LINE L1 5324 5462 -706 * 1180 217 26 39 chr3 41720026 41720335 -185804243 + L1MA9 LINE L1 5971 6275 -37 942 308 26 24 chr3 41720672 41721088 -185803490 + LTR16B LTR ERVL 36 452 -12 922 219 153 142 chr3 41721100 41721665 -185802913 + L2 LINE L2 1731 2311 -1003 369 0 0 0 chr3 41721665 41721706 -185802872 + (CCAA)n Simple_repeat Simple_repeat 4 44 0 922 219 153 142 chr3 41721706 41721981 -185802597 + L2 LINE L2 2311 2581 -733 263 157 0 20 chr3 41722101 41722152 -185802426 + L2 LINE L2 3263 3312 -1 188 317 32 57 chr3 41722576 41722699 -185801879 + MIR SINE MIR 136 255 -7 285 325 107 30 chr3 41722986 41723183 -185801395 - L2 LINE L2 0 3313 3102 27 49 0 0 chr3 41723577 41723618 -185800960 + AT_rich Low_complexity Low_complexity 1 41 0 2079 45 8 0 chr3 41723703 41723969 -185800609 + L1PA4 LINE L1 5886 6153 -2 307 259 24 12 chr3 41724982 41725067 -185799511 - MIR SINE MIR -106 156 71 243 0 0 0 chr3 41729463 41729490 -185795088 + (TG)n Simple_repeat Simple_repeat 2 28 0 1699 190 49 0 chr3 41729639 41729965 -185794613 - MER2 DNA MER2_type -1 343 2 211 254 78 109 chr3 41730030 41730223 -185794355 - L2 LINE L2 -22 3291 3105 336 341 56 62 chr3 41730334 41730671 -185793907 - L2 LINE L2 -423 2891 2557 360 0 0 0 chr3 41731004 41731044 -185793534 + (TG)n Simple_repeat Simple_repeat 1 40 0 356 287 28 37 chr3 41731807 41731915 -185792663 + MIR SINE MIR 23 129 -133 1019 185 0 0 chr3 41731933 41732090 -185792488 - AluJ SINE Alu -23 289 133 300 110 14 123 chr3 41732090 41732163 -185792415 + L1M4 LINE L1 4216 4280 -1866 558 158 0 11 chr3 41732202 41732297 -185792281 - AluJ SINE Alu -180 132 39 301 304 44 37 chr3 41732299 41732434 -185792144 + MIR SINE MIR 117 252 -10 807 91 0 4 chr3 41732656 41732882 -185791696 + AluY SINE Alu 19 339 0 747 260 109 27 chr3 41732886 41733328 -185791250 - L1MC4 LINE L1 -60 7982 7505 900 176 14 56 chr3 41733944 41734160 -185790418 + MER3 DNA MER1_type 1 207 -2 319 339 122 17 chr3 41734726 41734906 -185789672 - MIR SINE MIR -33 229 31 309 26 0 0 chr3 41735025 41735063 -185789515 + (CA)n Simple_repeat Simple_repeat 1 38 0 1232 160 28 12 chr3 41735302 41735552 -185789026 - L1MB3 LINE L1 0 6183 5930 393 22 0 0 chr3 41735668 41735714 -185788864 + (TG)n Simple_repeat Simple_repeat 2 47 0 611 213 24 16 chr3 41736964 41737091 -185787487 + FLAM_A SINE Alu 1 128 -5 325 277 107 13 chr3 41737806 41737965 -185786613 - HAL1 LINE L1 -845 1662 1489 198 0 0 0 chr3 41738152 41738174 -185786404 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr3 41738292 41738321 -185786257 + AT_rich Low_complexity Low_complexity 1 29 0 678 275 82 46 chr3 41738725 41739030 -185785548 + LTR16C LTR ERVL 176 491 0 236 318 62 55 chr3 41739776 41739911 -185784667 + MIR SINE MIR 1 148 -60 186 167 0 0 chr3 41742569 41742605 -185781973 + CT-rich Low_complexity Low_complexity 4 39 0 2032 172 89 5 chr3 41742652 41743047 -185781531 - MSTA LTR MaLR 0 428 1 1717 264 133 60 chr3 41743252 41743315 -185781263 - L1MC4 LINE L1 0 8042 7985 7477 38 0 0 chr3 41743315 41744687 -185779891 + L1PA5 LINE L1 4780 6150 -4 1717 264 133 60 chr3 41744687 41745850 -185778728 - L1MC4 LINE L1 -57 7985 6727 363 301 19 0 chr3 41745850 41745953 -185778625 + MER58C DNA MER1_type 1 105 -110 377 242 0 33 chr3 41746017 41746108 -185778470 + MER58C DNA MER1_type 124 211 -4 359 304 108 14 chr3 41746108 41746170 -185778408 - L1MC4a LINE L1 -1208 6600 6545 3552 134 11 11 chr3 41746170 41746736 -185777842 + L1PA16 LINE L1 5593 6158 -8 359 304 108 14 chr3 41746736 41746967 -185777611 - L1MC4a LINE L1 -1263 6545 6400 453 279 145 28 chr3 41747025 41747452 -185777126 - L1MC4a LINE L1 -1384 6424 5948 26 0 0 0 chr3 41747522 41747548 -185777030 + AT_rich Low_complexity Low_complexity 1 26 0 1618 260 52 48 chr3 41747562 41748213 -185776365 - L1MC4a LINE L1 -1854 5954 5301 374 279 51 10 chr3 41748698 41748878 -185775700 + L1M4 LINE L1 5223 5411 -744 1931 187 93 35 chr3 41748881 41749363 -185775215 - MER67D LTR ERV1 -4 510 1 1390 242 88 92 chr3 41750598 41751037 -185773541 - L1ME3A LINE L1 -20 6150 5711 2161 104 27 3 chr3 41751037 41751336 -185773242 + AluSg SINE Alu 1 306 -4 1390 242 88 92 chr3 41751336 41751351 -185773227 - L1ME3A LINE L1 -459 5711 5697 3927 136 8 3 chr3 41751351 41751982 -185772596 - MER41B LTR ERV1 -1 634 1 1390 242 88 92 chr3 41751982 41752262 -185772316 - L1ME3A LINE L1 -473 5697 5416 1578 192 137 47 chr3 41752262 41752730 -185771848 + MER67D LTR ERV1 1 510 -4 1390 242 88 92 chr3 41752730 41752829 -185771749 - L1ME3A LINE L1 -754 5416 5318 26 0 0 0 chr3 41752835 41752861 -185771717 + AT_rich Low_complexity Low_complexity 1 26 0 1037 284 93 38 chr3 41752896 41753797 -185770781 - L1ME3A LINE L1 -1239 4907 3957 327 206 101 85 chr3 41755134 41755323 -185769255 + MER112 DNA MER1_type 68 259 -1 336 384 31 0 chr3 41755740 41755899 -185768679 - MIR SINE MIR -93 169 6 339 243 20 40 chr3 41756513 41756661 -185767917 - L1MC4a LINE L1 -1008 5138 4994 772 146 30 0 chr3 41756724 41756888 -185767690 + CT-rich Low_complexity Low_complexity 1 169 0 24 0 0 0 chr3 41757192 41757216 -185767362 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 41757741 41757776 -185766802 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr3 41758331 41758365 -185766213 + AT_rich Low_complexity Low_complexity 1 34 0 471 305 192 32 chr3 41760668 41761225 -185763353 + L2 LINE L2 1706 2351 -963 717 175 0 29 chr3 41761232 41761369 -185763209 - MLT1A2 LTR MaLR -241 133 1 184 313 0 45 chr3 41761712 41761779 -185762799 - MIR SINE MIR -109 153 90 187 218 23 81 chr3 41761873 41761960 -185762618 + L2 LINE L2 733 814 -2500 254 275 72 0 chr3 41762003 41762072 -185762506 + MIR SINE MIR 78 151 -111 26 64 0 0 chr3 41762697 41762744 -185761834 + AT_rich Low_complexity Low_complexity 1 47 0 202 326 236 0 chr3 41763603 41763747 -185760831 - MIR SINE MIR -13 249 72 329 305 55 8 chr3 41763986 41764114 -185760464 + MIR SINE MIR 29 162 -100 466 285 29 7 chr3 41764538 41764675 -185759903 - MIR SINE MIR -121 141 2 328 330 46 0 chr3 41764742 41764851 -185759727 - MIR SINE MIR -67 195 82 1752 230 127 19 chr3 41764990 41765464 -185759114 + MLT1H LTR MaLR 4 528 -21 428 77 15 0 chr3 41765846 41765911 -185758667 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 819 311 81 84 chr3 41766495 41767611 -185756967 - ERVL LTR ERVL -956 4808 3697 1049 220 0 22 chr3 41767660 41767883 -185756695 - MER20 DNA MER1_type -1 218 1 244 211 28 28 chr3 41767892 41767963 -185756615 - MER94 DNA DNA 0 134 64 1287 326 66 40 chr3 41768010 41768727 -185755851 - ERVL LTR ERVL -2118 3646 2912 1645 351 40 7 chr3 41768943 41769783 -185754795 - ERVL LTR ERVL -3108 2656 1789 16255 200 28 10 chr3 41770038 41775484 -185749094 - L1PA15 LINE L1 -20 6796 1243 206 269 0 0 chr3 41777113 41777165 -185747413 - MIR SINE MIR -49 213 162 239 296 112 26 chr3 41777572 41777688 -185746890 - MIR SINE MIR -60 148 30 220 196 0 54 chr3 41777961 41778017 -185746561 + CT-rich Low_complexity Low_complexity 2 54 0 580 206 83 21 chr3 41778524 41778708 -185745870 - MER39 LTR ERV1 -495 158 6 1034 298 76 39 chr3 41778863 41779273 -185745305 - MLT1J1 LTR MaLR -21 425 1 197 325 132 0 chr3 41780023 41780137 -185744441 - MIR3 SINE MIR -38 170 42 3956 146 8 51 chr3 41780640 41780841 -185743737 + L1MB2 LINE L1 5420 5628 -543 2111 136 120 8 chr3 41780841 41781224 -185743354 + MSTA LTR MaLR 3 428 0 3956 146 8 51 chr3 41781224 41781801 -185742777 + L1MB2 LINE L1 5628 6164 -7 223 213 66 0 chr3 41782054 41782115 -185742463 - MIR SINE MIR -55 207 143 568 290 29 51 chr3 41782613 41782889 -185741689 - L1ME1 LINE L1 -6 6160 5891 1100 258 60 8 chr3 41782896 41783265 -185741313 + L1ME1 LINE L1 2383 2770 -3376 4741 262 58 30 chr3 41783327 41785962 -185738616 + L1ME1 LINE L1 3401 6115 -51 21 36 0 0 chr3 41785989 41786017 -185738561 + AT_rich Low_complexity Low_complexity 1 28 0 1546 206 143 102 chr3 41786229 41786983 -185737595 + LTR1B LTR ERV1 1 826 0 783 246 75 39 chr3 41788303 41788584 -185735994 + LTR16A1 LTR ERVL 27 317 -140 1913 239 72 17 chr3 41788586 41789005 -185735573 + MLT2B1 LTR ERVL 1 442 -78 246 105 0 0 chr3 41789106 41789144 -185735434 + (CA)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr3 41789205 41789229 -185735349 + (TTCTC)n Simple_repeat Simple_repeat 4 27 0 271 243 0 27 chr3 41789235 41789309 -185735269 + LTR16A1 LTR ERVL 373 444 -13 202 261 0 14 chr3 41789402 41789471 -185735107 + CT-rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr3 41789648 41789672 -185734906 + AT_rich Low_complexity Low_complexity 1 24 0 5279 189 26 22 chr3 41789675 41791447 -185733131 - L1PA16 LINE L1 -11 6155 4381 1852 142 4 11 chr3 41791447 41791728 -185732850 - AluSx SINE Alu -33 279 1 5279 189 26 22 chr3 41791728 41792043 -185732535 - L1PA16 LINE L1 -1785 4381 4069 2191 96 0 7 chr3 41793007 41793289 -185731289 + AluSq SINE Alu 11 290 -23 382 248 145 55 chr3 41793913 41794224 -185730354 + LTR16C LTR ERVL 153 491 0 363 274 103 29 chr3 41794261 41794436 -185730142 + LTR16C LTR ERVL 301 488 -3 1707 176 24 0 chr3 41794564 41794853 -185729725 + AluJb SINE Alu 3 298 -14 2206 125 0 0 chr3 41795415 41795737 -185728841 + AluSx SINE Alu 1 322 0 870 221 9 28 chr3 41796140 41796357 -185728221 + L1ME3A LINE L1 5956 6168 -2 338 260 161 37 chr3 41796360 41796633 -185727945 + L1M4 LINE L1 5015 5321 -825 857 251 107 78 chr3 41796635 41796769 -185727809 + MLT1H LTR MaLR 87 216 -333 2140 103 4 4 chr3 41796769 41797077 -185727501 - AluSc SINE Alu 0 308 1 857 251 107 78 chr3 41797077 41797391 -185727187 + MLT1H LTR MaLR 216 549 0 324 0 0 0 chr3 41797446 41797482 -185727096 + (CA)n Simple_repeat Simple_repeat 1 36 0 1696 279 66 10 chr3 41798969 41799453 -185725125 + MLT1H LTR MaLR 3 513 -36 4249 66 2 25 chr3 41799453 41800044 -185724534 + L1PA8A LINE L1 5306 5882 -249 2691 194 24 26 chr3 41800042 41800706 -185723872 - L1 LINE L1 -814 5514 4852 * 6458 207 40 19 chr3 41800701 41800725 -185723853 - L1 LINE L1 -3572 2756 2734 2393 125 11 0 chr3 41800725 41801076 -185723502 - THE1A LTR MaLR 0 355 1 6458 207 40 19 chr3 41801076 41803750 -185720828 - L1 LINE L1 -3594 2734 3 2543 249 85 4 chr3 41803751 41804518 -185720060 - L1M4 LINE L1 -943 5701 4873 * 4742 238 101 23 chr3 41804509 41807485 -185717093 - L1M4 LINE L1 -2134 4510 1307 324 141 0 47 chr3 41807498 41807626 -185716952 + (TA)n Simple_repeat Simple_repeat 1 122 0 1428 256 82 87 chr3 41807631 41808121 -185716457 - L1M4 LINE L1 -5330 1212 721 216 0 0 0 chr3 41808121 41808145 -185716433 + (TA)n Simple_repeat Simple_repeat 2 25 0 1428 256 82 87 chr3 41808145 41808923 -185715655 - L1M4 LINE L1 -5821 721 1 229 241 48 12 chr3 41808982 41809065 -185715513 - L1P5 LINE L1 -705 5451 5366 390 288 97 44 chr3 41809075 41809301 -185715277 - L1M4 LINE L1 -832 5314 5077 48 60 0 0 chr3 41809322 41809405 -185715173 + AT_rich Low_complexity Low_complexity 1 83 0 202 172 17 17 chr3 41809775 41809833 -185714745 + (TTTAA)n Simple_repeat Simple_repeat 2 59 0 193 132 19 19 chr3 41809868 41809921 -185714657 + (TA)n Simple_repeat Simple_repeat 2 54 0 443 337 139 5 chr3 41811883 41812085 -185712493 + MIR SINE MIR 21 249 -13 621 320 79 8 chr3 41812405 41812911 -185711667 + L1MC4a LINE L1 4070 4611 -1535 24 0 0 0 chr3 41813394 41813418 -185711160 + AT_rich Low_complexity Low_complexity 1 24 0 342 318 112 14 chr3 41813508 41813931 -185710647 + L1MC4a LINE L1 5424 5657 -464 5240 209 25 24 chr3 41814099 41815758 -185708820 - L1MC1 LINE L1 0 6333 4678 1964 177 7 47 chr3 41815758 41816164 -185708414 - MLT1B LTR MaLR 0 390 1 5240 209 25 24 chr3 41816164 41816207 -185708371 - L1MC1 LINE L1 -1655 4678 4637 2286 142 15 88 chr3 41816207 41816568 -185708010 + Tigger2a DNA MER2_type 1 322 -2386 1864 141 18 0 chr3 41816568 41816851 -185707727 + AluSx SINE Alu 1 288 -24 2286 142 15 88 chr3 41816851 41816955 -185707623 + Tigger2a DNA MER2_type 322 432 -2 5240 209 25 24 chr3 41816955 41817291 -185707287 - L1MC1 LINE L1 -1696 4637 4302 1477 179 40 86 chr3 41817291 41817468 -185707110 + MLT1B LTR MaLR 1 156 -234 2030 137 13 0 chr3 41817468 41817775 -185706803 - AluSx SINE Alu -1 311 1 1477 179 40 86 chr3 41817775 41817946 -185706632 + MLT1B LTR MaLR 156 333 -57 4515 147 16 17 chr3 41817946 41818717 -185705861 - LTR1 LTR ERV1 0 785 16 359 153 0 0 chr3 41818715 41818774 -185705804 + MLT1B LTR MaLR 330 388 -2 * 2911 147 10 19 chr3 41820898 41821380 -185703198 - MER66A LTR ERV1 0 478 1 577 325 57 29 chr3 41822705 41822985 -185701593 + L2 LINE L2 2596 2883 -431 1187 335 32 3 chr3 41822995 41823371 -185701207 + LTR16C LTR ERVL 4 390 -101 3472 51 0 7 chr3 41823373 41823824 -185700754 - LTR7 LTR ERV1 -2 448 1 2396 84 47 16 chr3 41823824 41824204 -185700374 - HERVH LTR ERV1 0 7713 7322 1304 129 20 0 chr3 41824202 41824403 -185700175 - HERVH LTR ERV1 -1894 5819 5615 * 2570 163 0 0 chr3 41824437 41824848 -185699730 - HERVH LTR ERV1 -2564 5149 4739 925 162 0 7 chr3 41824846 41825000 -185699578 - HERVH LTR ERV1 -4069 3644 3492 * 899 122 27 0 chr3 41824990 41825137 -185699441 - HERVH LTR ERV1 -4423 3290 3140 * 1650 131 0 25 chr3 41825116 41825399 -185699179 - HERVH LTR ERV1 -4718 2995 2720 286 289 13 0 chr3 41825400 41825476 -185699102 + LTR16C LTR ERVL 415 491 0 21 0 0 0 chr3 41825700 41825721 -185698857 + AT_rich Low_complexity Low_complexity 1 21 0 28 95 0 0 chr3 41826024 41826108 -185698470 + AT_rich Low_complexity Low_complexity 1 84 0 1084 274 26 39 chr3 41826152 41826609 -185697969 + L1MD2 LINE L1 3171 3621 -2525 483 115 164 8 chr3 41826582 41826704 -185697874 + L1MDa LINE L1 2451 2591 -3949 * 1651 253 25 20 chr3 41826701 41827254 -185697324 + L1MD2 LINE L1 4275 4830 -1710 901 269 97 7 chr3 41827350 41827659 -185696919 + MER2 DNA MER2_type 9 345 0 3261 230 87 34 chr3 41827659 41828149 -185696429 + L1MD2 LINE L1 4833 5295 -1458 270 0 0 0 chr3 41828149 41828179 -185696399 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3261 230 87 34 chr3 41828179 41828826 -185695752 + L1MD2 LINE L1 5295 5906 -847 869 166 6 6 chr3 41828826 41828995 -185695583 + L1MA10 LINE L1 6163 6331 -3 3261 230 87 34 chr3 41828995 41829657 -185694921 + L1MD2 LINE L1 5906 6734 -19 1633 205 3 0 chr3 41829906 41830199 -185694379 - AluJo SINE Alu -14 298 5 47 44 0 0 chr3 41830420 41830488 -185694090 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr3 41830523 41830546 -185694032 + AT_rich Low_complexity Low_complexity 1 23 0 254 315 139 12 chr3 41831834 41831999 -185692579 - MIR SINE MIR 0 262 77 253 281 94 31 chr3 41832281 41832377 -185692201 + L2 LINE L2 3203 3304 -9 186 290 130 0 chr3 41832923 41832992 -185691586 - MIR3 SINE MIR 0 208 131 1127 148 23 0 chr3 41833520 41833737 -185690841 - L1MA4 LINE L1 -5 6295 6074 331 274 55 14 chr3 41834061 41834207 -185690371 - L1ME3A LINE L1 -20 6150 5999 226 328 0 0 chr3 41835254 41835315 -185689263 + CT-rich Low_complexity Low_complexity 3 63 0 195 203 0 0 chr3 41835723 41835782 -185688796 + (TA)n Simple_repeat Simple_repeat 1 59 0 7959 10 0 0 chr3 41835784 41836943 -185687635 - L1HS LINE L1 -2 6153 4995 * 22448 23 0 0 chr3 41836940 41839607 -185684971 + L1HS LINE L1 2314 4980 -1166 181 164 18 18 chr3 41839985 41840040 -185684538 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 36 0 0 chr3 41840064 41840092 -185684486 + AT_rich Low_complexity Low_complexity 1 28 0 585 254 83 16 chr3 41840154 41840347 -185684231 + MIR SINE MIR 55 260 -2 246 242 22 55 chr3 41840387 41840478 -185684100 - L1ME3A LINE L1 -2306 5502 5415 3292 135 2 38 chr3 41840549 41841126 -185683452 - L1PA15 LINE L1 -6 6159 5604 22 35 0 0 chr3 41841212 41841241 -185683337 + AT_rich Low_complexity Low_complexity 1 29 0 289 306 112 15 chr3 41841466 41841672 -185682906 + L1MC/D LINE L1 5598 5823 -1985 1493 144 125 13 chr3 41841783 41842088 -185682490 - MER44D DNA MER2_type 0 609 1 594 311 170 45 chr3 41842285 41842791 -185681787 - L1ME3A LINE L1 -1162 4984 4543 1874 163 3 7 chr3 41842791 41843092 -185681486 - AluSx SINE Alu -11 301 2 594 311 170 45 chr3 41843092 41843402 -185681176 - L1ME3A LINE L1 -1603 4543 4066 2268 72 14 0 chr3 41843416 41843708 -185680870 - AluY SINE Alu -15 296 1 459 211 44 44 chr3 41843916 41844030 -185680548 + FLAM_C SINE Alu 13 126 -17 422 274 54 62 chr3 41844880 41845121 -185679457 - L2 LINE L2 -2 3311 3073 397 361 72 6 chr3 41845378 41845558 -185679020 - MIR3 SINE MIR -7 201 10 188 352 9 9 chr3 41845658 41845763 -185678815 - MIR SINE MIR -10 252 148 3695 186 53 3 chr3 41846082 41846823 -185677755 - L1MC2 LINE L1 -22 6322 5545 367 345 94 23 chr3 41846820 41847255 -185677323 - L1ME LINE L1 -348 5822 5357 * 520 267 131 10 chr3 41847319 41847525 -185677053 - MIR SINE MIR 0 262 32 1906 156 29 73 chr3 41848069 41848437 -185676141 - L1MA6 LINE L1 -6 6294 5944 2032 124 3 0 chr3 41848437 41848720 -185675858 - AluSx SINE Alu -28 284 1 1906 156 29 73 chr3 41848720 41848762 -185675816 - L1MA6 LINE L1 -356 5944 5902 234 319 34 34 chr3 41848757 41848961 -185675617 - L1ME LINE L1 -1460 4686 4483 * 1848 137 14 73 chr3 41849083 41849440 -185675138 - MER1B DNA MER1_type 0 337 2 180 0 0 0 chr3 41849748 41849768 -185674810 + (TG)n Simple_repeat Simple_repeat 2 21 0 937 153 0 7 chr3 41849945 41850095 -185674483 - L1M1 LINE L1 -6634 931 783 3227 190 82 9 chr3 41850169 41851053 -185673525 - L1M LINE L1 -745 5401 4472 19223 172 56 22 chr3 41851056 41853632 -185670946 + L1M1 LINE L1 13 2500 -5065 2074 96 24 20 chr3 41853632 41853925 -185670653 + AluSg1 SINE Alu 1 294 -15 19223 172 56 22 chr3 41853925 41855048 -185669530 + L1M1 LINE L1 2500 3583 -3982 2122 132 0 0 chr3 41855048 41855351 -185669227 + AluSq SINE Alu 10 312 -1 19223 172 56 22 chr3 41855351 41857133 -185667445 + L1M1 LINE L1 3583 5688 -1877 2326 86 0 3 chr3 41857137 41857440 -185667138 + AluY SINE Alu 1 302 -9 5761 90 26 5 chr3 41857455 41858303 -185666275 + L1MA1 LINE L1 5429 6298 -4 961 260 124 49 chr3 41859287 41859753 -185664825 + MLT1H LTR MaLR 9 509 -40 25 31 0 0 chr3 41860006 41860038 -185664540 + AT_rich Low_complexity Low_complexity 1 32 0 301 226 81 65 chr3 41860110 41860234 -185664344 - L1ME4a LINE L1 -5 6116 5991 198 118 0 0 chr3 41860373 41860407 -185664171 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 152 0 0 chr3 41861459 41861492 -185663086 + GA-rich Low_complexity Low_complexity 3 35 0 377 316 60 0 chr3 41861516 41861684 -185662894 + Charlie8 DNA MER1_type 100 277 -2140 651 213 143 71 chr3 41862079 41862470 -185662108 + LTR30 LTR ERV1 238 587 -9 21276 276 32 35 chr3 41862481 41869097 -185655481 + HERV3 LTR ERV1 1 6594 -1832 631 260 95 38 chr3 41869540 41869943 -185654635 + LTR30 LTR ERV1 112 493 0 736 182 16 0 chr3 41869985 41870106 -185654472 + FLAM_A SINE Alu 1 123 -10 826 233 33 38 chr3 41870415 41870625 -185653953 - MER63A DNA MER1_type 0 210 2 461 270 147 21 chr3 41870746 41871068 -185653510 + MLT1G LTR MaLR 170 588 -2 1255 281 41 20 chr3 41871953 41872720 -185651858 - L1ME LINE L1 -669 5497 4719 370 165 44 11 chr3 41872763 41872854 -185651724 - L1MA6 LINE L1 0 6300 6207 447 180 46 1 chr3 41872854 41872951 -185651627 + L1MA6 LINE L1 5986 6085 -215 202 70 0 47 chr3 41873019 41873062 -185651516 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 855 71 0 0 chr3 41873064 41873176 -185651402 - L1PB1 LINE L1 -13 6138 6027 1209 140 145 4 chr3 41873208 41873443 -185651135 + MLT1B LTR MaLR 123 390 0 210 279 241 0 chr3 41873910 41873989 -185650589 - MER5A DNA MER1_type -83 106 9 351 0 0 0 chr3 41874370 41874409 -185650169 + (TA)n Simple_repeat Simple_repeat 2 40 0 200 135 0 19 chr3 41874778 41874830 -185649748 + (TA)n Simple_repeat Simple_repeat 2 52 0 1161 232 23 68 chr3 41874855 41875209 -185649369 + MLT1A2 LTR MaLR 37 374 0 2546 230 85 0 chr3 41875209 41875809 -185648769 + MLT1A2-int LTR MaLR 1 651 -1084 495 153 46 69 chr3 41875839 41875970 -185648608 + MLT1B LTR MaLR 229 356 -34 1171 191 80 78 chr3 41876372 41876759 -185647819 + MLT1B LTR MaLR 1 388 -2 435 178 22 49 chr3 41877285 41877470 -185647108 + CT-rich Low_complexity Low_complexity 1 180 0 2367 96 3 0 chr3 41877472 41877774 -185646804 - AluSp SINE Alu -7 306 4 203 179 0 0 chr3 41877790 41877829 -185646749 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 213 211 0 19 chr3 41878219 41878271 -185646307 + CT-rich Low_complexity Low_complexity 2 52 0 330 294 106 17 chr3 41878668 41878848 -185645730 - MIR SINE MIR -32 230 35 641 275 109 22 chr3 41879011 41879240 -185645338 - MIR SINE MIR -13 249 1 1998 124 0 27 chr3 41879354 41879653 -185644925 - AluSx SINE Alu -16 296 6 545 227 40 0 chr3 41880288 41880438 -185644140 - MER3 DNA MER1_type -87 122 14 608 354 48 15 chr3 41880585 41880921 -185643657 + MLT1I LTR MaLR 63 409 0 1674 247 21 5 chr3 41882026 41882742 -185641836 + L1M4c LINE L1 2097 2825 -3557 316 125 0 0 chr3 41882751 41882799 -185641779 - L1P LINE L1 -807 5367 5320 4560 124 48 3 chr3 41882801 41883553 -185641025 + L1PA13 LINE L1 5374 6159 -4 290 173 13 27 chr3 41883568 41883643 -185640935 + L1M4c LINE L1 2811 2884 -3498 1952 155 33 41 chr3 41883643 41884010 -185640568 - THE1B LTR MaLR 0 364 1 10662 103 10 42 chr3 41884010 41884071 -185640507 - THE1B-int LTR MaLR 0 1580 1519 268 125 0 0 chr3 41884071 41884111 -185640467 + tRNA-Gly-GGA tRNA tRNA 1 40 -35 10662 103 10 42 chr3 41884111 41885199 -185639379 - THE1B-int LTR MaLR -61 1519 454 2108 144 0 3 chr3 41885199 41885512 -185639066 - AluSp SINE Alu -1 312 1 10662 103 10 42 chr3 41885512 41885953 -185638625 - THE1B-int LTR MaLR -1126 454 1 1724 161 38 52 chr3 41885955 41886322 -185638256 - THE1B LTR MaLR -2 362 1 687 152 0 198 chr3 41886322 41886585 -185637993 + L1M4c LINE L1 2880 3090 -3292 183 218 0 0 chr3 41886665 41886720 -185637858 + (TA)n Simple_repeat Simple_repeat 1 55 0 27 0 0 0 chr3 41886720 41886747 -185637831 + AT_rich Low_complexity Low_complexity 1 27 0 485 97 79 0 chr3 41886750 41886915 -185637663 + (TA)n Simple_repeat Simple_repeat 1 178 0 212 96 77 0 chr3 41886917 41886969 -185637609 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 593 144 27 10 chr3 41886971 41887275 -185637303 + (TA)n Simple_repeat Simple_repeat 1 309 0 307 277 27 45 chr3 41887277 41887389 -185637189 - L1MC4 LINE L1 -1340 6702 6593 579 95 66 5 chr3 41887396 41887806 -185636772 + (TA)n Simple_repeat Simple_repeat 1 435 0 306 241 0 38 chr3 41888238 41888317 -185636261 - MER58C DNA MER1_type -16 199 124 363 301 19 0 chr3 41888382 41888485 -185636093 - MER58C DNA MER1_type -110 105 1 1590 267 139 56 chr3 41888485 41889637 -185634941 + L1MC4 LINE L1 6727 7974 -68 7424 39 0 0 chr3 41889648 41890769 -185633809 - L1PA5 LINE L1 -4 6150 5031 288 133 0 0 chr3 41890881 41890941 -185633637 + (C)n Simple_repeat Simple_repeat 1 60 0 212 344 8 16 chr3 41890985 41891113 -185633465 + CT-rich Low_complexity Low_complexity 2 128 0 856 299 134 43 chr3 41891699 41892451 -185632127 - L1M4 LINE L1 -5721 821 1 364 290 81 54 chr3 41892607 41892828 -185631750 - L1M4 LINE L1 -843 5303 5077 48 60 0 0 chr3 41892849 41892932 -185631646 + AT_rich Low_complexity Low_complexity 1 83 0 43 75 0 0 chr3 41893259 41893339 -185631239 + GC_rich Low_complexity Low_complexity 1 80 0 388 206 27 54 chr3 41893339 41893523 -185631055 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 23 87 0 0 chr3 41893545 41893591 -185630987 + GC_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr3 41894290 41894322 -185630256 + AT_rich Low_complexity Low_complexity 1 32 0 229 220 0 17 chr3 41894408 41894467 -185630111 - tRNA-Lys-AAA tRNA tRNA -13 63 6 383 218 129 68 chr3 41895360 41895550 -185629028 - AluSg SINE Alu -197 103 2 421 127 66 0 chr3 41895966 41896132 -185628446 + (TA)n Simple_repeat Simple_repeat 1 177 0 81 0 0 0 chr3 41896132 41896213 -185628365 + AT_rich Low_complexity Low_complexity 1 81 0 638 116 64 2 chr3 41896213 41896750 -185627828 + (TA)n Simple_repeat Simple_repeat 1 570 0 21 0 0 0 chr3 41897085 41897106 -185627472 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 41897704 41897735 -185626843 + AT_rich Low_complexity Low_complexity 1 31 0 5153 118 85 0 chr3 41898076 41899265 -185625313 + L1PA11 LINE L1 4917 6174 0 399 307 127 36 chr3 41899474 41899806 -185624772 + MLT1J1 LTR MaLR 11 372 -74 2085 141 0 0 chr3 41899863 41900169 -185624409 - AluSx SINE Alu -6 306 1 298 352 56 50 chr3 41900247 41900727 -185623851 - L2 LINE L2 -882 2432 1950 427 246 132 0 chr3 41900760 41900874 -185623704 - MER94 DNA DNA -5 129 1 352 390 60 39 chr3 41902601 41902684 -185621894 + L2 LINE L2 2368 2448 -866 1973 95 4 4 chr3 41902684 41902957 -185621621 + AluSc SINE Alu 1 273 -36 321 26 0 0 chr3 41902957 41902995 -185621583 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 352 390 60 39 chr3 41902995 41903261 -185621317 + L2 LINE L2 2448 2729 -585 2307 94 0 3 chr3 41903261 41903568 -185621010 - AluSc SINE Alu -3 306 1 352 390 60 39 chr3 41903568 41903601 -185620977 + L2 LINE L2 2729 2760 -554 1475 234 116 46 chr3 41903613 41904131 -185620447 + MLT2B3 LTR ERVL 1 554 0 1641 144 89 0 chr3 41904213 41904483 -185620095 - AluSx SINE Alu -18 294 1 279 371 153 33 chr3 41904528 41904803 -185619775 + L2 LINE L2 3006 3313 0 183 170 21 106 chr3 41905161 41905208 -185619370 - MIR SINE MIR -150 112 70 622 229 201 6 chr3 41905738 41905917 -185618661 + MER20 DNA MER1_type 1 214 -5 249 254 48 0 chr3 41905971 41906034 -185618544 + MIR SINE MIR 66 131 -131 2202 135 25 28 chr3 41907274 41907674 -185616904 - LTR23 LTR ERV1 -38 399 1 618 245 14 0 chr3 41907674 41907821 -185616757 - LTR23-int LTR ERV1 0 5123 4975 215 303 0 13 chr3 41907905 41907981 -185616597 - L2 LINE L2 -1081 2233 2159 202 211 26 0 chr3 41908049 41908087 -185616491 - L2 LINE L2 -13 3300 3262 236 328 64 35 chr3 41908183 41908354 -185616224 - MIR SINE MIR -86 176 1 227 333 106 0 chr3 41908730 41908919 -185615659 - HAL1 LINE L1 -869 1638 1430 * 388 30 30 25 chr3 41908899 41908965 -185615613 - L1PA13 LINE L1 -83 6078 6018 652 85 0 0 chr3 41908967 41909061 -185615517 + L1PA13 LINE L1 6067 6160 -3 343 335 37 50 chr3 41909206 41909448 -185615130 - HAL1 LINE L1 -1232 1275 1037 275 268 119 55 chr3 41910063 41910373 -185614205 + L1M4 LINE L1 4518 4847 -1299 1994 149 37 16 chr3 41911452 41911828 -185612750 - L1MA3 LINE L1 -1 6304 5921 795 260 12 6 chr3 41912887 41913056 -185611522 + MER45A DNA AcHobo 9 178 0 345 295 52 24 chr3 41914926 41915070 -185609508 + MIR SINE MIR 20 163 -45 441 390 56 17 chr3 41915095 41915326 -185609252 + L2 LINE L2 2437 2676 -638 189 0 0 0 chr3 41915827 41915848 -185608730 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 316 339 92 50 chr3 41916294 41916512 -185608066 + L2 LINE L2 3032 3258 -14 823 313 0 27 chr3 41917532 41917788 -185606790 + MIR SINE MIR 14 262 0 277 392 54 8 chr3 41917826 41917956 -185606622 + L2 LINE L2 3125 3260 -12 215 221 63 84 chr3 41917933 41918028 -185606550 - MIR3 SINE MIR -6 202 110 * 2300 110 0 0 chr3 41918383 41918682 -185605896 + AluSg SINE Alu 11 309 -1 294 299 17 34 chr3 41918885 41919002 -185605576 - MIR SINE MIR -116 146 32 610 191 107 0 chr3 41919158 41919289 -185605289 + L1MEc LINE L1 35 179 -6217 1996 225 57 64 chr3 41919293 41920054 -185604524 + L1M4 LINE L1 3949 4703 -1443 2154 113 0 10 chr3 41920056 41920357 -185604221 + AluSc SINE Alu 1 298 -11 629 250 140 0 chr3 41920385 41920549 -185604029 + L1PA15 LINE L1 14 200 -7381 * 1168 187 4 17 chr3 41920547 41920788 -185603790 + L1PA15 LINE L1 2828 3065 -4509 7426 191 18 13 chr3 41920798 41921913 -185602665 + L1PA15 LINE L1 5029 6156 -1428 216 0 0 0 chr3 41921913 41921937 -185602641 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7426 191 18 13 chr3 41921937 41922408 -185602170 + L1PA15 LINE L1 6156 6623 -961 22567 171 33 32 chr3 41922416 41924451 -185600127 + L1PA10 LINE L1 35 2066 -4417 2107 132 3 7 chr3 41924451 41924754 -185599824 - AluSq SINE Alu -11 302 1 22567 171 33 32 chr3 41924754 41929040 -185595538 + L1PA10 LINE L1 2066 6446 -37 558 29 0 0 chr3 41929045 41929113 -185595465 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 5227 140 22 15 chr3 41929113 41930096 -185594482 + L1PA15 LINE L1 6615 7599 -4 1612 239 53 23 chr3 41930090 41930697 -185593881 + L1ME1 LINE L1 4695 5319 -827 * 936 169 12 12 chr3 41930709 41930875 -185593703 + FRAM SINE Alu 1 165 -11 2368 254 82 11 chr3 41930888 41931710 -185592868 + L1ME1 LINE L1 5298 6334 0 428 280 19 79 chr3 41933103 41933317 -185591261 + L2 LINE L2 3108 3308 -5 415 325 38 0 chr3 41933381 41933538 -185591040 - LTR16B LTR ERVL -301 163 1 279 224 28 149 chr3 41934198 41934260 -185590318 - L2 LINE L2 -25 3247 3202 654 135 0 0 chr3 41934260 41934364 -185590214 + L1PB4 LINE L1 6053 6156 0 279 224 28 149 chr3 41934364 41934408 -185590170 - L2 LINE L2 -70 3202 3154 315 292 182 24 chr3 41934552 41934761 -185589817 + MIR SINE MIR 1 242 -20 427 341 56 14 chr3 41935621 41935835 -185588743 - MER90 LTR ERV1 -202 412 190 200 330 59 17 chr3 41936140 41936258 -185588320 + L2 LINE L2 2658 2780 -534 282 318 37 28 chr3 41937779 41937886 -185586692 + L2 LINE L2 2651 2758 -556 311 206 500 0 chr3 41938190 41938316 -185586262 - MER5A DNA MER1_type 0 189 1 199 333 0 0 chr3 41938546 41938615 -185585963 + MIR SINE MIR 150 218 -44 315 244 15 82 chr3 41939189 41939324 -185585254 - LTR16C LTR ERVL 0 491 366 2408 79 0 7 chr3 41939377 41939681 -185584897 - AluY SINE Alu -8 303 2 214 303 185 17 chr3 41939973 41940151 -185584427 - MIR SINE MIR -51 211 4 21 71 0 0 chr3 41940475 41940517 -185584061 + AT_rich Low_complexity Low_complexity 1 42 0 11049 216 66 29 chr3 41940803 41944227 -185580351 + L1PA16 LINE L1 2009 5604 -562 183 42 0 0 chr3 41944227 41944251 -185580327 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11049 216 66 29 chr3 41944251 41944836 -185579742 + L1PA16 LINE L1 5604 6166 0 225 281 0 18 chr3 41945066 41945123 -185579455 - MLT2F LTR ERVL -502 161 106 1851 191 0 9 chr3 41945608 41945923 -185578655 + AluJo SINE Alu 1 312 0 24 53 0 0 chr3 41946575 41946613 -185577965 + AT_rich Low_complexity Low_complexity 1 38 0 2804 10 0 3 chr3 41946651 41946961 -185577617 - AluYa5 SINE Alu -2 309 1 773 305 72 72 chr3 41947897 41948399 -185576179 - MLT1J LTR MaLR -9 502 1 470 235 33 33 chr3 41948603 41948786 -185575792 + HAL1b LINE L1 665 847 -501 18151 191 85 31 chr3 41949576 41954705 -185569873 + L1P3 LINE L1 5 5426 -1035 692 92 0 0 chr3 41954713 41954800 -185569778 + L1PA4 LINE L1 12 98 -6048 * 36105 52 4 3 chr3 41954798 41960318 -185564260 + L1PA4 LINE L1 623 6163 -170 6202 103 10 0 chr3 41960318 41961372 -185563206 + L1PA10 LINE L1 5098 6164 -4 36105 52 4 3 chr3 41961372 41961544 -185563034 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 41963082 41963115 -185561463 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 41963125 41963153 -185561425 + AT_rich Low_complexity Low_complexity 1 28 0 2009 137 35 29 chr3 41963155 41963498 -185561080 + THE1B LTR MaLR 1 345 -19 5846 122 7 9 chr3 41963498 41964350 -185560228 + THE1B-int LTR MaLR 3 852 -728 26 30 0 0 chr3 41964943 41964976 -185559602 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 41964986 41965014 -185559564 + AT_rich Low_complexity Low_complexity 1 28 0 1984 140 35 29 chr3 41965016 41965359 -185559219 + THE1B LTR MaLR 1 345 -19 633 85 28 19 chr3 41965359 41965465 -185559113 + THE1B-int LTR MaLR 3 109 -1471 9373 40 0 0 chr3 41967214 41968360 -185556218 + L1P LINE L1 1689 2834 -3312 260 271 9 6 chr3 41968974 41969084 -185555494 - MER5A DNA MER1_type -6 183 10 966 194 71 8 chr3 41969103 41969371 -185555207 + MER33 DNA MER1_type 4 288 -36 194 297 31 0 chr3 41969389 41969453 -185555125 - MER5A DNA MER1_type 0 189 124 723 247 41 0 chr3 41969546 41969716 -185554862 - MER5A DNA MER1_type 0 189 13 280 259 0 14 chr3 41970487 41970603 -185553975 - MER5A DNA MER1_type 0 189 10 256 294 92 98 chr3 41971598 41971782 -185552796 - L2 LINE L2 0 3272 3090 594 324 28 6 chr3 41971832 41972014 -185552564 - MIR SINE MIR -10 252 67 303 213 27 27 chr3 41972106 41972181 -185552397 - L2 LINE L2 -12 3260 3186 2298 84 3 3 chr3 41972219 41972517 -185552061 + AluSc SINE Alu 1 298 -11 180 0 0 0 chr3 41972810 41972830 -185551748 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr3 41972830 41972853 -185551725 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 41972867 41972890 -185551688 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 41972900 41972924 -185551654 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 41972938 41972964 -185551614 + GC_rich Low_complexity Low_complexity 1 26 0 1628 151 60 28 chr3 41976897 41977182 -185547396 + AluSx SINE Alu 2 295 -17 303 288 112 53 chr3 41977476 41977646 -185546932 - L2 LINE L2 -1 3312 3133 994 305 25 25 chr3 41977667 41978031 -185546547 - MLT1H LTR MaLR -2 547 184 268 236 9 9 chr3 41978665 41978771 -185545807 + (TA)n Simple_repeat Simple_repeat 1 106 0 2259 163 3 8 chr3 41978775 41979144 -185545434 + THE1C-int LTR MaLR 1086 1452 -128 944 34 62 34 chr3 41979333 41979479 -185545099 + THE1C-int LTR MaLR 1431 1580 0 2431 94 42 8 chr3 41979479 41979840 -185544738 + THE1C LTR MaLR 1 373 -2 272 236 11 0 chr3 41979841 41979930 -185544648 + (TA)n Simple_repeat Simple_repeat 2 91 0 576 278 114 0 chr3 41981295 41981471 -185543107 + MIR SINE MIR 67 262 0 303 203 29 14 chr3 41981560 41981629 -185542949 - MIR3 SINE MIR -25 183 114 21 36 0 0 chr3 41982419 41982447 -185542131 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 41983092 41983134 -185541444 + AT_rich Low_complexity Low_complexity 1 42 0 180 361 16 25 chr3 41983195 41983317 -185541261 + MIR3 SINE MIR 85 205 -3 237 65 0 0 chr3 41983900 41983931 -185540647 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1227 192 95 32 chr3 41987230 41987568 -185537010 + MLT1A1 LTR MaLR 5 363 -2 6874 216 82 37 chr3 41987568 41989220 -185535358 + MLT1A1-int LTR MaLR 3 1729 -6 1402 162 110 55 chr3 41989225 41989571 -185535007 + MLT1A1 LTR MaLR 1 365 0 204 40 0 0 chr3 41989762 41989787 -185534791 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 401 324 71 0 chr3 41990264 41990434 -185534144 - MIR SINE MIR -6 256 75 1767 214 20 8 chr3 41990445 41990801 -185533777 - MLT1A1 LTR MaLR -5 360 1 236 207 17 17 chr3 41991657 41991715 -185532863 + CT-rich Low_complexity Low_complexity 1 58 0 924 114 0 0 chr3 41991755 41991895 -185532683 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 251 120 0 40 chr3 41991895 41991945 -185532633 + (TTTTC)n Simple_repeat Simple_repeat 1 48 0 622 205 21 156 chr3 41991995 41992335 -185532243 - MER58B DNA MER1_type 0 341 45 1486 197 91 19 chr3 41992587 41992948 -185531630 - MLT1B LTR MaLR -3 387 1 954 144 39 6 chr3 41992966 41993147 -185531431 + MER96B DNA MER1_type? 49 235 -182 190 263 0 53 chr3 41993652 41993709 -185530869 - MIR SINE MIR -123 139 86 315 353 108 6 chr3 41994799 41994966 -185529612 + MIR SINE MIR 8 191 -71 363 183 158 0 chr3 41994966 41995048 -185529530 + MER69A DNA AcHobo 19 113 -64 234 288 0 0 chr3 41995398 41995457 -185529121 - L2 LINE L2 -1741 1573 1515 630 342 8 23 chr3 41995487 41995744 -185528834 - MIR SINE MIR -8 254 2 931 325 118 37 chr3 41996059 41996241 -185528337 - L2 LINE L2 -1979 1335 1169 2237 121 19 19 chr3 41996241 41996605 -185527973 - THE1B LTR MaLR 0 364 1 931 325 118 37 chr3 41996605 41997123 -185527455 - L2 LINE L2 -2145 1169 578 722 233 20 0 chr3 41997199 41997345 -185527233 + MER58A DNA MER1_type 2 150 0 302 306 99 16 chr3 41997405 41997526 -185527052 - L2 LINE L2 -2845 469 339 377 372 14 46 chr3 41998161 41998379 -185526199 - L2 LINE L2 -3029 285 75 283 204 265 0 chr3 41998397 41998495 -185526083 + MER5C DNA MER1_type 1 124 -200 211 180 18 171 chr3 41998504 41998615 -185525963 + MER5C DNA MER1_type 226 319 -5 357 140 0 0 chr3 41998659 41998716 -185525862 + L1MB5 LINE L1 6032 6088 -86 30 27 0 0 chr3 41998716 41998753 -185525825 + AT_rich Low_complexity Low_complexity 1 37 0 1925 201 8 13 chr3 41998880 41999272 -185525306 - MLT1B LTR MaLR 0 390 1 461 254 203 35 chr3 42000452 42000690 -185523888 + LTR16A LTR ERVL 126 408 -49 468 327 36 0 chr3 42001486 42001654 -185522924 + MIR SINE MIR 47 220 -42 200 327 9 80 chr3 42001737 42001850 -185522728 + MIR3 SINE MIR 93 197 -11 233 275 65 46 chr3 42001881 42002011 -185522567 - MIR SINE MIR -65 143 21 315 0 0 0 chr3 42002557 42002592 -185521986 + (T)n Simple_repeat Simple_repeat 1 35 0 360 357 46 8 chr3 42002592 42002851 -185521727 + L2 LINE L2 2752 3020 -252 360 317 79 30 chr3 42003216 42003380 -185521198 - MIR SINE MIR -71 191 20 433 316 51 55 chr3 42003431 42003684 -185520894 - MIR SINE MIR -8 254 3 180 152 0 0 chr3 42004246 42004279 -185520299 + (TAA)n Simple_repeat Simple_repeat 2 34 0 730 186 0 0 chr3 42004307 42004431 -185520147 - AluJb SINE Alu -188 124 1 199 350 29 29 chr3 42004492 42004595 -185519983 - MIR SINE MIR -63 145 63 322 317 75 19 chr3 42004736 42004897 -185519681 - MIR SINE MIR -91 171 2 435 305 80 19 chr3 42005069 42005472 -185519106 - L1 LINE L1 -2285 3861 3428 716 292 30 30 chr3 42005474 42005779 -185518799 - MLT2C1 LTR ERVL -3 394 90 32196 78 11 3 chr3 42005786 42010849 -185513729 + L1P LINE L1 7 5111 -1035 659 92 0 0 chr3 42010857 42010944 -185513634 + L1PA4 LINE L1 12 98 -6048 * 36403 53 6 3 chr3 42010942 42016456 -185508122 + L1PA4 LINE L1 623 6163 -170 6118 106 10 0 chr3 42016456 42017508 -185507070 + L1PA10 LINE L1 5098 6164 -4 36403 53 6 3 chr3 42017508 42017680 -185506898 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 42019219 42019252 -185505326 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 42019262 42019290 -185505288 + AT_rich Low_complexity Low_complexity 1 28 0 1859 140 35 29 chr3 42019292 42019635 -185504943 + THE1B LTR MaLR 1 345 -19 10969 119 6 6 chr3 42019635 42021213 -185503365 + THE1B-int LTR MaLR 3 1580 0 1973 144 44 39 chr3 42021213 42021575 -185503003 + THE1B LTR MaLR 1 364 0 202 263 114 35 chr3 42023644 42023758 -185500820 + L2 LINE L2 3178 3300 -13 340 311 81 7 chr3 42024940 42025088 -185499490 + L3 LINE CR1 1343 1501 -76 581 260 61 22 chr3 42025165 42025346 -185499232 - L2 LINE L2 0 3313 3126 211 358 73 32 chr3 42025430 42025648 -185498930 - MIR SINE MIR 0 262 36 1684 240 9 14 chr3 42026067 42026532 -185498046 + L1ME3 LINE L1 5684 6155 -7 1782 168 0 48 chr3 42027209 42027525 -185497053 + AluJo SINE Alu 1 301 -11 429 260 83 88 chr3 42027947 42028002 -185496576 - MER5A DNA MER1_type -9 180 126 1929 125 0 7 chr3 42028002 42028282 -185496296 + AluSp SINE Alu 28 305 -8 429 260 83 88 chr3 42028282 42028407 -185496171 - MER5A DNA MER1_type -63 126 1 191 348 62 54 chr3 42028500 42028759 -185495819 - L2 LINE L2 -643 2671 2411 516 243 85 79 chr3 42029145 42029196 -185495382 - MER5A DNA MER1_type -11 178 129 1975 125 0 4 chr3 42029196 42029475 -185495103 + AluSp SINE Alu 28 305 -8 516 243 85 79 chr3 42029475 42029600 -185494978 - MER5A DNA MER1_type -60 129 1 227 351 58 50 chr3 42029693 42029952 -185494626 - L2 LINE L2 -643 2671 2411 494 233 40 20 chr3 42031875 42032025 -185492553 - LTR33 LTR ERVL -258 263 111 282 313 14 0 chr3 42032997 42033144 -185491434 - L1ME3A LINE L1 -197 6042 5894 1592 168 27 0 chr3 42033365 42033621 -185490957 + AluJb SINE Alu 45 307 -5 255 243 196 14 chr3 42033630 42033778 -185490800 - L1ME3A LINE L1 -647 5586 5412 230 292 138 26 chr3 42033845 42034352 -185490226 - L1ME3A LINE L1 -852 5363 4800 448 241 77 79 chr3 42034550 42035043 -185489535 - L1ME3A LINE L1 -2160 4055 3564 21 36 0 0 chr3 42035095 42035123 -185489455 + AT_rich Low_complexity Low_complexity 1 28 0 639 287 70 20 chr3 42035160 42035561 -185489017 - L1ME3A LINE L1 -5398 998 578 326 255 75 31 chr3 42035650 42035811 -185488767 + L1MEc LINE L1 233 400 -5996 259 313 14 21 chr3 42035795 42035939 -185488639 - L1ME3A LINE L1 -6218 178 36 * 2668 243 93 30 chr3 42035963 42036482 -185488096 - L1MC4 LINE L1 -374 7668 7183 2215 80 26 7 chr3 42036482 42036784 -185487794 - AluY SINE Alu -3 308 1 2668 243 93 30 chr3 42036784 42037398 -185487180 - L1MC4 LINE L1 -859 7183 6463 2317 232 42 42 chr3 42037660 42038246 -185486332 - L1MC3 LINE L1 -1 7784 7196 3492 144 21 38 chr3 42038246 42038859 -185485719 + LTR26 LTR ERV1 1 603 0 2317 232 42 42 chr3 42038859 42039009 -185485569 - L1MC3 LINE L1 -588 7197 7048 681 325 84 46 chr3 42039716 42040301 -185484277 - L1MEd LINE L1 -5511 608 2 198 302 87 70 chr3 42040715 42040887 -185483691 - MIR SINE MIR -4 258 84 1433 272 48 7 chr3 42041992 42042426 -185482152 + LTR16A1 LTR ERVL 6 457 0 241 350 94 19 chr3 42044310 42044470 -185480108 + MIR SINE MIR 21 192 -70 224 314 59 85 chr3 42044528 42044646 -185479932 - L2 LINE L2 -20 3252 3138 283 274 63 32 chr3 42045260 42045355 -185479223 - MIR SINE MIR -64 144 47 1349 279 139 28 chr3 42046531 42047515 -185477063 - L2 LINE L2 -1 3312 2214 2617 128 5 21 chr3 42047543 42047972 -185476606 + MER57B LTR ERV1 3 424 -10 621 268 19 24 chr3 42047980 42048242 -185476336 + MER57B-int LTR ERV1 3 298 -7239 717 328 50 30 chr3 42050237 42050757 -185473821 + MER57B-int LTR ERV1 158 623 -4024 274 337 26 26 chr3 42050914 42051184 -185473394 + MER57B-int LTR ERV1 3400 3669 -4144 384 326 15 15 chr3 42051634 42051880 -185472698 + MER57B-int LTR ERV1 3784 5140 -1951 1973 267 12 51 chr3 42051976 42053345 -185471233 + MER57B-int LTR ERV1 2145 6169 -1368 2035 144 7 0 chr3 42054105 42054397 -185470181 - AluSx SINE Alu -18 294 1 539 292 16 25 chr3 42055191 42055432 -185469146 + MER57B-int LTR ERV1 6816 6993 -544 486 131 20 40 chr3 42055481 42055580 -185468998 + MER57B-int LTR ERV1 7441 7537 0 2555 134 16 32 chr3 42055580 42056019 -185468559 + MER57B LTR ERV1 1 432 -2 260 318 80 25 chr3 42056025 42056226 -185468352 - L2 LINE L2 -1120 2194 1983 216 0 0 0 chr3 42056235 42056259 -185468319 + (TG)n Simple_repeat Simple_repeat 1 24 0 187 267 0 22 chr3 42056429 42056474 -185468104 - L2 LINE L2 -13 3300 3257 * 243 254 0 17 chr3 42056444 42056503 -185468075 - MIR SINE MIR -21 241 184 1729 158 0 4 chr3 42056515 42056809 -185467769 + AluSx SINE Alu 26 318 0 1799 151 29 17 chr3 42056839 42057190 -185467388 + Tigger2a DNA MER2_type 8 362 -72 925 176 35 10 chr3 42057310 42057509 -185467069 + Tigger2 DNA MER2_type 2515 2718 0 219 227 53 67 chr3 42057509 42057584 -185466994 - MIR SINE MIR -105 157 84 473 244 52 0 chr3 42057595 42057710 -185466868 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 3585 114 62 48 chr3 42057696 42057984 -185466594 + Tigger3(Golem) DNA MER2_type 2285 2568 -461 1504 178 13 64 chr3 42057984 42058298 -185466280 + AluJo SINE Alu 1 298 -14 3585 114 62 48 chr3 42058298 42058734 -185465844 + Tigger3(Golem) DNA MER2_type 2568 3019 -10 261 0 0 0 chr3 42058885 42058914 -185465664 + (T)n Simple_repeat Simple_repeat 1 29 0 258 364 25 16 chr3 42059591 42059712 -185464866 + LTR16C LTR ERVL 127 248 -243 349 257 46 53 chr3 42059740 42059811 -185464767 + LTR16C LTR ERVL 341 411 -80 1941 176 12 47 chr3 42059811 42060215 -185464363 + MLT1B LTR MaLR 1 390 0 349 257 46 53 chr3 42060215 42060295 -185464283 + LTR16C LTR ERVL 411 491 0 400 330 132 9 chr3 42061009 42061221 -185463357 - MIR SINE MIR -14 248 11 2241 266 84 49 chr3 42061702 42062917 -185461661 - L1MDa LINE L1 -1371 5169 3913 491 194 54 0 chr3 42062925 42063054 -185461524 + L1MC2 LINE L1 5313 5448 -896 * 2472 180 90 40 chr3 42063052 42063684 -185460894 + L1MC2 LINE L1 5675 6338 -6 680 258 75 11 chr3 42063726 42064098 -185460480 - L1M4 LINE L1 -2614 3532 3137 * 1270 211 61 27 chr3 42064092 42064467 -185460111 - L1MA9 LINE L1 -1 6311 5924 1418 177 36 33 chr3 42064467 42064801 -185459777 + THE1C LTR MaLR 1 335 -40 2348 203 85 14 chr3 42064908 42066016 -185458562 - L1MA9 LINE L1 -399 5913 4727 706 147 88 78 chr3 42066122 42066326 -185458252 + L1MC2 LINE L1 6133 6338 -6 754 264 73 5 chr3 42066368 42066739 -185457839 - L1MDa LINE L1 -2614 3926 3531 * 4230 197 66 36 chr3 42066733 42067109 -185457469 - L1MA9 LINE L1 -1 6311 5948 1881 154 38 22 chr3 42067109 42067478 -185457100 + THE1C LTR MaLR 1 375 0 4230 197 66 36 chr3 42067478 42069127 -185455451 - L1MA9 LINE L1 -364 5948 4233 1835 218 11 11 chr3 42069140 42069594 -185454984 + L1 LINE L1 3257 3710 -2436 1191 200 62 0 chr3 42069595 42069855 -185454723 + L1 LINE L1 3817 4092 -2054 1187 284 109 34 chr3 42069850 42070382 -185454196 - L1M4 LINE L1 -5373 582 11 * 7410 242 97 18 chr3 42070398 42070508 -185454070 - L1MDa LINE L1 -2997 3543 3443 1040 171 37 14 chr3 42070508 42070725 -185453853 - L1PA16 LINE L1 -2 6164 5943 7410 242 97 18 chr3 42070725 42071564 -185453014 - L1MDa LINE L1 -3097 3443 2671 4210 130 6 9 chr3 42071564 42072219 -185452359 + MER39B LTR ERV1 1 653 0 7410 242 97 18 chr3 42072219 42074385 -185450193 - L1MDa LINE L1 -3869 2671 173 1227 107 0 0 chr3 42074392 42074551 -185450027 - AluSp SINE Alu -18 295 137 693 204 7 14 chr3 42074552 42074699 -185449879 - L1MDa LINE L1 -6379 161 16 500 239 67 8 chr3 42074747 42074881 -185449697 - MLT1H LTR MaLR -396 153 12 3962 132 53 78 chr3 42075479 42076273 -185448305 + LTR1 LTR ERV1 12 785 0 2000 117 154 9 chr3 42076310 42076660 -185447918 + L1PB1 LINE L1 5734 6134 -17 378 276 135 0 chr3 42076669 42076839 -185447739 + L1MC4a LINE L1 5957 6149 -1659 21 0 0 0 chr3 42076985 42077006 -185447572 + AT_rich Low_complexity Low_complexity 1 21 0 313 364 123 5 chr3 42077259 42077479 -185447099 - MIR SINE MIR -16 246 1 813 259 48 35 chr3 42078444 42078479 -185446099 - L1MEc LINE L1 -3739 3218 3185 1780 164 44 6 chr3 42078479 42078821 -185445757 + MER46B DNA MER2_type 5 234 -2 813 259 48 35 chr3 42078821 42079232 -185445346 - L1MEc LINE L1 -3772 3185 2807 202 414 23 23 chr3 42079640 42079860 -185444718 - L2 LINE L2 -462 2852 2633 473 263 29 108 chr3 42080844 42080969 -185443609 - MIR SINE MIR -39 223 124 1104 228 16 0 chr3 42080969 42081219 -185443359 - L1PB4 LINE L1 -3 6153 5900 473 263 29 108 chr3 42081219 42081333 -185443245 - MIR SINE MIR -138 124 3 2708 272 77 11 chr3 42082041 42082780 -185441798 + L1MDa LINE L1 11 798 -5742 2752 278 76 19 chr3 42082785 42083691 -185440887 - L1MEc LINE L1 -5900 959 2 1032 288 109 16 chr3 42083775 42084161 -185440417 - LTR16A1 LTR ERVL -34 423 2 197 248 248 29 chr3 42084453 42084558 -185440020 - L2 LINE L2 -2 3270 3143 2015 131 3 0 chr3 42085324 42085631 -185438947 + AluSx SINE Alu 3 310 0 327 336 40 20 chr3 42085962 42086111 -185438467 + MLT1H LTR MaLR 20 171 -378 831 179 106 11 chr3 42086114 42086293 -185438285 + MER34C LTR ERV1 4 199 -386 672 333 20 5 chr3 42086319 42086514 -185438064 - MER115 DNA AcHobo -345 348 151 1436 201 164 23 chr3 42087067 42087464 -185437114 - MLT1C LTR MaLR -12 455 3 1469 255 86 18 chr3 42087472 42087568 -185437010 - MLT1C-int LTR MaLR -6 1365 1277 2257 108 0 0 chr3 42087568 42087863 -185436715 - AluSx SINE Alu -17 295 1 1469 255 86 18 chr3 42087863 42088209 -185436369 - MLT1C-int LTR MaLR -94 1277 893 1370 213 68 95 chr3 42088195 42088636 -185435942 - MLT1C-int LTR MaLR -383 988 560 * 2612 192 26 87 chr3 42088636 42089463 -185435115 + MER4D LTR ERV1 1 896 -7 686 147 9 0 chr3 42089471 42089587 -185434991 - MLT1C-int LTR MaLR -808 563 447 2108 180 42 27 chr3 42089669 42089875 -185434703 - MLT1C LTR MaLR -2 465 264 2134 121 60 14 chr3 42089875 42090223 -185434355 - THE1B LTR MaLR 0 364 1 2108 180 42 27 chr3 42090223 42090465 -185434113 - MLT1C LTR MaLR -203 264 10 1392 297 150 48 chr3 42090645 42092327 -185432251 + HAL1 LINE L1 4 1857 -650 371 288 38 15 chr3 42093166 42093298 -185431280 + MIR SINE MIR 123 257 -5 525 258 133 21 chr3 42093593 42093833 -185430745 + MER5C DNA MER1_type 5 271 -53 321 307 127 37 chr3 42093921 42094110 -185430468 + L2 LINE L2 3104 3309 -4 378 0 0 0 chr3 42095533 42095575 -185429003 + (CA)n Simple_repeat Simple_repeat 1 42 0 365 306 104 14 chr3 42095944 42096168 -185428410 - MIR SINE MIR -11 251 2 255 308 84 0 chr3 42097197 42097304 -185427274 + MIR SINE MIR 76 191 -71 447 312 126 21 chr3 42098793 42099181 -185425397 - LTR33 LTR ERVL -59 462 34 297 194 119 0 chr3 42099653 42099720 -185424858 - L2 LINE L2 -19 3253 3179 1645 190 45 0 chr3 42100004 42100293 -185424285 + AluJb SINE Alu 3 304 -8 188 390 0 0 chr3 42100986 42101045 -185423533 - L3 LINE CR1 -1 1576 1518 556 237 86 38 chr3 42101085 42101271 -185423307 + MER3 DNA MER1_type 12 206 -3 229 273 0 0 chr3 42101231 42101286 -185423292 - MER3 DNA MER1_type -119 90 36 * 182 105 26 0 chr3 42101598 42101636 -185422942 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 24 0 0 0 chr3 42102171 42102195 -185422383 + AT_rich Low_complexity Low_complexity 1 24 0 940 216 74 66 chr3 42103759 42104194 -185420384 - MLT1A2 LTR MaLR 0 374 14 315 0 0 0 chr3 42105121 42105156 -185419422 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2806 3 0 0 chr3 42105158 42105459 -185419119 - AluYb8 SINE Alu -17 301 1 23 0 0 0 chr3 42105459 42105482 -185419096 + AT_rich Low_complexity Low_complexity 1 23 0 213 406 58 0 chr3 42105682 42105820 -185418758 + MIR3 SINE MIR 36 181 -27 340 279 12 0 chr3 42106404 42106490 -185418088 + MER96 DNA MER1_type? 79 165 -10 2297 213 48 8 chr3 42106578 42107114 -185417464 - MER74A LTR ERVL 0 558 1 188 206 0 0 chr3 42107221 42107255 -185417323 + L2 LINE L2 3258 3291 -22 180 111 0 0 chr3 42108761 42108788 -185415790 + (A)n Simple_repeat Simple_repeat 1 27 0 368 338 75 10 chr3 42108802 42109003 -185415575 - MIR SINE MIR 0 262 49 239 292 119 18 chr3 42109034 42109202 -185415376 - HAL1 LINE L1 -8 2499 2315 1193 226 4 0 chr3 42109497 42109758 -185414820 + L1ME2 LINE L1 5720 5981 -183 6620 60 26 1 chr3 42109760 42111335 -185413243 + L1PA5 LINE L1 4564 6152 -2 321 270 22 0 chr3 42111330 42111419 -185413159 - MLT2C1 LTR ERVL -305 92 2 9738 231 41 10 chr3 42111420 42113771 -185410807 - ERVL LTR ERVL -1 5653 3263 1694 238 131 33 chr3 42113766 42114195 -185410383 - ERVL LTR ERVL -2704 3060 2564 * 2814 0 0 0 chr3 42114195 42114495 -185410083 + AluYa8 SINE Alu 1 300 -10 1694 238 131 33 chr3 42114495 42114615 -185409963 - ERVL LTR ERVL -3200 2564 2457 775 203 0 0 chr3 42114733 42114866 -185409712 - ERVL LTR ERVL -3622 2142 2010 21 71 0 0 chr3 42114870 42114912 -185409666 + AT_rich Low_complexity Low_complexity 1 42 0 698 150 0 36 chr3 42115154 42115294 -185409284 + L1PB3 LINE L1 6019 6153 -1 22 0 0 0 chr3 42116152 42116174 -185408404 + AT_rich Low_complexity Low_complexity 1 22 0 203 138 0 0 chr3 42116182 42116211 -185408367 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 1818 164 0 11 chr3 42116929 42117247 -185407331 - AluJb SINE Alu 0 315 1 5889 152 47 25 chr3 42117277 42118439 -185406139 - Tigger3b DNA MER2_type -13 1218 31 1065 282 72 11 chr3 42118937 42119284 -185405294 + MLT1A2 LTR MaLR 1 368 -6 1933 210 67 6 chr3 42119291 42119841 -185404737 + MLT1A2-int LTR MaLR 20 739 -632 280 226 16 0 chr3 42119950 42120012 -185404566 + MLT1A2-int LTR MaLR 669 731 -1004 1661 232 36 8 chr3 42120210 42120602 -185403976 + MLT1A2-int LTR MaLR 1314 1716 -19 324 293 30 85 chr3 42121022 42121186 -185403392 - HAL1 LINE L1 -688 1819 1665 3493 216 53 10 chr3 42121189 42122108 -185402470 - L1MB1 LINE L1 -853 5293 4335 4023 181 65 2 chr3 42122109 42122912 -185401666 + L1MB1 LINE L1 5315 6167 -1 782 230 60 105 chr3 42122970 42123418 -185401160 - HAL1 LINE L1 -869 1638 1211 348 169 0 0 chr3 42123448 42123525 -185401053 + CT-rich Low_complexity Low_complexity 2 78 0 534 318 18 39 chr3 42123778 42124061 -185400517 - HAL1 LINE L1 -1600 907 631 293 227 13 13 chr3 42124652 42124727 -185399851 - MIR SINE MIR -111 151 77 221 269 202 25 chr3 42125969 42126088 -185398490 + MIR SINE MIR 90 229 -33 315 0 0 0 chr3 42126250 42126285 -185398293 + (TG)n Simple_repeat Simple_repeat 2 36 0 305 230 139 61 chr3 42126705 42126870 -185397708 - MIR SINE MIR -77 185 8 268 269 10 29 chr3 42127222 42127326 -185397252 + MLT1A2-int LTR MaLR 1622 1723 -12 288 242 150 33 chr3 42127348 42127468 -185397110 + MLT1A2 LTR MaLR 7 140 -250 2092 115 7 3 chr3 42127552 42127847 -185396731 + AluSx SINE Alu 11 306 -6 2071 115 3 7 chr3 42129422 42129709 -185394869 - AluSx SINE Alu -26 286 1 778 234 67 60 chr3 42129974 42130256 -185394322 + MER5C DNA MER1_type 41 324 0 1392 30 0 12 chr3 42231043 42231210 -185293368 - L1PA3 LINE L1 0 6155 5991 2222 169 57 7 chr3 42231211 42231614 -185292964 + MER82 DNA MER2_type 151 573 -80 2102 121 7 7 chr3 42231614 42231911 -185292667 - AluSq SINE Alu -15 298 2 937 135 0 0 chr3 42233422 42233555 -185291023 - AluJb SINE Alu -22 290 158 694 169 7 37 chr3 42234053 42234189 -185290389 - AluJo SINE Alu -176 136 5 766 258 157 23 chr3 42234675 42234981 -185289597 - MER7A DNA MER2_type -1 345 1 3593 148 113 28 chr3 42236148 42237018 -185287560 + pTR5 LTR ERV1 741 2020 -418 265 245 61 0 chr3 42237018 42237116 -185287462 + LTR30 LTR ERV1 539 642 -80 2376 84 12 3 chr3 42237117 42237440 -185287138 + pTR5 LTR ERV1 67 392 -2046 1715 191 30 6 chr3 42237440 42237776 -185286802 - MLT1A1 LTR MaLR -21 344 1 230 222 0 19 chr3 42238082 42238136 -185286442 - L2 LINE L2 -341 2972 2920 2452 86 0 3 chr3 42238713 42239026 -185285552 - AluSx SINE Alu 0 312 1 285 216 68 23 chr3 42239042 42239130 -185285448 - LTR33A LTR ERVL -6 517 426 * 720 226 75 51 chr3 42239127 42239444 -185285134 - LTR50 LTR ERVL -145 650 402 207 0 0 0 chr3 42240196 42240219 -185284359 + (TG)n Simple_repeat Simple_repeat 2 24 0 2018 125 14 3 chr3 42240224 42240519 -185284059 - AluSx SINE Alu -14 298 1 945 100 0 33 chr3 42240519 42240669 -185283909 - L1MA6 LINE L1 -475 5825 5681 1356 130 9 31 chr3 42240826 42241049 -185283529 - AluSg/x SINE Alu -20 292 75 354 322 25 8 chr3 42241100 42241221 -185283357 - MIR3 SINE MIR -29 179 57 22 0 0 0 chr3 42242668 42242690 -185281888 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr3 42243148 42243181 -185281397 + AT_rich Low_complexity Low_complexity 1 33 0 2149 134 0 7 chr3 42243779 42244085 -185280493 + AluSx SINE Alu 1 304 -8 235 286 164 37 chr3 42244898 42245087 -185279491 + L2 LINE L2 3004 3216 -97 724 157 0 0 chr3 42245176 42245284 -185279294 + FLAM_C SINE Alu 2 109 -34 875 130 7 7 chr3 42245414 42245552 -185279026 + AluSg/x SINE Alu 161 298 -12 1960 139 3 20 chr3 42245561 42245864 -185278714 + AluSx SINE Alu 1 298 -14 1241 101 19 43 chr3 42246585 42246792 -185277786 + AluSg/x SINE Alu 95 296 -16 773 273 96 18 chr3 42246807 42247268 -185277310 - L1ME LINE L1 -578 5592 5094 2289 101 3 3 chr3 42247287 42247585 -185276993 + AluSg SINE Alu 1 298 -12 1918 120 0 11 chr3 42247598 42247872 -185276706 + AluSg SINE Alu 15 285 -25 419 256 141 41 chr3 42247985 42248065 -185276513 + L1MC4a LINE L1 5727 5798 -2010 249 33 0 0 chr3 42248065 42248095 -185276483 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2163 126 3 3 chr3 42248097 42248399 -185276179 + AluSx SINE Alu 1 302 -10 419 256 141 41 chr3 42248399 42248585 -185275993 + L1MC4a LINE L1 5798 6023 -1785 1730 127 36 42 chr3 42248610 42248917 -185275661 + AluJo SINE Alu 1 305 -7 653 316 67 78 chr3 42249368 42250217 -185274361 + L2 LINE L2 2131 2970 -344 1731 199 10 33 chr3 42250541 42250932 -185273646 - L1M4c LINE L1 -4460 1924 1543 2318 103 3 3 chr3 42250944 42251256 -185273322 - AluSx SINE Alu 0 312 1 216 0 0 0 chr3 42251257 42251281 -185273297 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2005 132 3 3 chr3 42251283 42251570 -185273008 - AluSx SINE Alu -25 287 1 273 100 43 86 chr3 42251570 42251640 -185272938 - L1M4c LINE L1 -4825 1559 1493 438 284 29 14 chr3 42251827 42251989 -185272589 + MIR SINE MIR 3 169 -39 1239 140 40 80 chr3 42254054 42254354 -185270224 + AluSx SINE Alu 1 288 -24 880 200 0 49 chr3 42254423 42254628 -185269950 + MER3 DNA MER1_type 12 206 -3 21 0 0 0 chr3 42254999 42255020 -185269558 + AT_rich Low_complexity Low_complexity 1 21 0 309 234 152 28 chr3 42255123 42255268 -185269310 - MIR SINE MIR -52 210 48 312 289 35 0 chr3 42255923 42256037 -185268541 + L2 LINE L2 2740 2857 -457 195 284 25 25 chr3 42256501 42256582 -185267996 + MIR SINE MIR 1 81 -181 1311 169 46 39 chr3 42256817 42257101 -185267477 - AluJo SINE Alu -26 286 1 1888 124 36 33 chr3 42257224 42257530 -185267048 - AluJb SINE Alu -5 307 1 2434 101 0 0 chr3 42257534 42257840 -185266738 - AluSp SINE Alu -7 306 1 303 279 351 3 chr3 42258225 42258661 -185265917 + L2 LINE L2 2713 3307 -6 252 201 114 114 chr3 42258953 42259217 -185265361 - L1MC4 LINE L1 -1 8041 7778 4082 123 134 38 chr3 42259456 42260774 -185263804 + pTR5 LTR ERV1 743 2360 -78 815 176 22 50 chr3 42260994 42261176 -185263402 - MSTD LTR MaLR -108 288 112 267 213 53 0 chr3 42261190 42261265 -185263313 - L1MDa LINE L1 -4964 1576 1498 523 152 30 0 chr3 42261270 42261369 -185263209 - MSTD LTR MaLR -294 102 1 2461 78 0 0 chr3 42261410 42261717 -185262861 + AluY SINE Alu 1 307 -4 1339 157 11 15 chr3 42261758 42262020 -185262558 - L1MDa LINE L1 -4505 2035 1775 1826 157 14 7 chr3 42262429 42262723 -185261855 - AluJb SINE Alu -16 296 1 27 29 0 0 chr3 42263359 42263393 -185261185 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr3 42264068 42264103 -185260475 + AT_rich Low_complexity Low_complexity 1 35 0 319 377 0 0 chr3 42264512 42264573 -185260005 + C-rich Low_complexity Low_complexity 1 61 0 257 288 25 75 chr3 42264694 42264816 -185259762 - L1ME LINE L1 -565 5556 5442 2532 57 3 0 chr3 42264816 42265117 -185259461 + AluY SINE Alu 1 302 -9 257 288 25 75 chr3 42265117 42265154 -185259424 - L1ME LINE L1 -679 5442 5405 373 299 143 31 chr3 42265467 42265691 -185258887 + MIR SINE MIR 14 262 0 359 339 163 25 chr3 42265685 42265930 -185258648 + L2 LINE L2 2993 3271 -1 * 2055 125 11 3 chr3 42266199 42266486 -185258092 + AluSx SINE Alu 6 294 -18 640 219 0 0 chr3 42266529 42266648 -185257930 + FLAM_A SINE Alu 5 123 -10 2009 120 11 3 chr3 42267192 42267475 -185257103 - AluSx SINE Alu -27 285 1 425 186 39 10 chr3 42267476 42267578 -185257000 + Charlie1 DNA MER1_type 2638 2742 -19 1419 87 5 15 chr3 42267964 42268160 -185256418 + AluSg/x SINE Alu 109 302 -10 2304 110 0 3 chr3 42268340 42268641 -185255937 - AluSx SINE Alu -12 300 1 23 0 0 0 chr3 42269076 42269099 -185255479 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr3 42270261 42270298 -185254280 + AT_rich Low_complexity Low_complexity 1 37 0 1511 138 11 35 chr3 42271616 42271899 -185252679 + LTR22A LTR ERVK 183 458 0 2179 113 7 0 chr3 42272075 42272368 -185252210 - AluSp SINE Alu -18 295 1 301 203 13 51 chr3 42272746 42272825 -185251753 + Charlie8 DNA MER1_type 1698 1773 -644 262 94 245 0 chr3 42272837 42272865 -185251713 - MER41B LTR ERV1 -88 547 527 2244 110 10 0 chr3 42272865 42273173 -185251405 + AluSq SINE Alu 1 311 -2 262 94 245 0 chr3 42273173 42273197 -185251381 - MER41B LTR ERV1 -108 527 482 344 269 147 51 chr3 42273198 42273726 -185250852 + Charlie8 DNA MER1_type 1767 2414 -3 401 203 0 0 chr3 42373778 42373852 -185150726 - L1PA16 LINE L1 -265 5901 5828 5198 134 21 14 chr3 42373855 42374692 -185149886 - Tigger1 DNA MER2_type -910 1508 666 5330 108 99 116 chr3 42374695 42376285 -185148293 - pTR5 LTR ERV1 0 2438 748 339 113 0 48 chr3 42376285 42376347 -185148231 - Tigger1 DNA MER2_type -1744 674 616 823 130 48 0 chr3 42376352 42376498 -185148080 - L1MA4 LINE L1 -6 6294 6142 604 173 0 16 chr3 42376498 42376625 -185147953 - L1MA4A LINE L1 -202 6101 5977 2835 201 62 7 chr3 42376626 42377218 -185147360 - Tigger1 DNA MER2_type -1777 641 17 191 206 196 11 chr3 42377473 42377565 -185147013 + MIR SINE MIR 148 256 -6 187 250 118 0 chr3 42378084 42378152 -185146426 + MIR3 SINE MIR 87 162 -46 23 33 0 0 chr3 42378250 42378280 -185146298 + AT_rich Low_complexity Low_complexity 1 30 0 448 268 127 6 chr3 42379405 42379562 -185145016 + LTR50 LTR ERVL 1 176 -619 266 290 51 68 chr3 42379883 42380059 -185144519 - HAL1 LINE L1 -2333 174 2 475 294 27 7 chr3 42380299 42380445 -185144133 + MIR SINE MIR 53 201 -61 1339 211 53 19 chr3 42380795 42381329 -185143249 + MLT1E2 LTR MaLR 8 626 0 299 281 45 0 chr3 42381777 42381866 -185142712 + MIR SINE MIR 111 203 -59 1125 169 30 5 chr3 42383686 42383887 -185140691 + L1PA16 LINE L1 5937 6142 -24 5614 133 29 15 chr3 42383897 42384806 -185139772 + Tigger1 DNA MER2_type 1498 2418 0 232 208 75 0 chr3 42385709 42385762 -185138816 - LTR33A LTR ERVL 0 523 467 413 284 91 11 chr3 42386716 42386892 -185137686 - MIR SINE MIR 0 262 73 207 170 0 0 chr3 42386935 42386982 -185137596 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr3 42387327 42387358 -185137220 + AT_rich Low_complexity Low_complexity 1 31 0 31 82 0 0 chr3 42388233 42388306 -185136272 + AT_rich Low_complexity Low_complexity 1 73 0 23 54 0 0 chr3 42388462 42388499 -185136079 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 42388625 42388649 -185135929 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 42388949 42388977 -185135601 + AT_rich Low_complexity Low_complexity 1 28 0 521 331 43 30 chr3 42389017 42389389 -185135189 - L1MC/D LINE L1 -2177 5631 5255 2496 164 58 91 chr3 42389534 42390224 -185134354 - L1MC2 LINE L1 0 6344 5678 291 345 36 49 chr3 42390276 42390499 -185134079 + L2 LINE L2 2629 2848 -466 270 279 52 32 chr3 42390499 42390653 -185133925 + L1ME3A LINE L1 5207 5363 -783 1289 121 10 35 chr3 42390697 42390895 -185133683 - AluSq SINE Alu -22 291 99 438 278 28 7 chr3 42390945 42391089 -185133489 + L1ME3A LINE L1 5451 5597 -569 223 239 30 0 chr3 42391123 42391190 -185133388 + (TA)n Simple_repeat Simple_repeat 1 69 0 906 258 80 19 chr3 42391222 42391583 -185132995 + L1ME3A LINE L1 5788 6170 0 22 0 0 0 chr3 42393159 42393181 -185131397 + AT_rich Low_complexity Low_complexity 1 22 0 1082 156 14 46 chr3 42393355 42393573 -185131005 - AluSg/x SINE Alu -17 295 85 334 39 0 20 chr3 42393573 42393624 -185130954 - AluY SINE Alu -52 249 200 1168 81 0 0 chr3 42393624 42393773 -185130805 - AluSq/x SINE Alu -164 149 1 323 233 144 62 chr3 42394068 42394214 -185130364 - MLT1H LTR MaLR -9 540 383 191 364 0 18 chr3 42394643 42394698 -185129880 + L2 LINE L2 3127 3180 -92 1240 250 38 31 chr3 42394845 42395356 -185129222 + MER77 LTR ERV1 55 601 -4 320 332 113 55 chr3 42395542 42395933 -185128645 - L2 LINE L2 -55 3258 2789 745 253 22 6 chr3 42395933 42396115 -185128463 + MER5A DNA MER1_type 2 186 -3 320 332 113 55 chr3 42396115 42396322 -185128256 - L2 LINE L2 -524 2789 2595 210 296 98 23 chr3 42398014 42398146 -185126432 - L2 LINE L2 0 3313 3172 4448 194 13 33 chr3 42398195 42398427 -185126151 - L1 LINE L1 -1280 4866 4631 4783 65 5 5 chr3 42398427 42399057 -185125521 - L1PA5 LINE L1 -8 6146 5517 4448 194 13 33 chr3 42399057 42399842 -185124736 - L1 LINE L1 -1515 4631 3870 6627 75 9 0 chr3 42399851 42401174 -185123404 - L1PA7 LINE L1 0 6154 4824 220 326 116 43 chr3 42401525 42401663 -185122915 - MIR SINE MIR -7 255 108 231 349 34 34 chr3 42404509 42404655 -185119923 + L2 LINE L2 2553 2698 -616 243 349 60 18 chr3 42405244 42405410 -185119168 + LTR16C LTR ERVL 305 477 -14 257 333 60 47 chr3 42405531 42405681 -185118897 + L2 LINE L2 3116 3267 -5 3894 156 48 10 chr3 42408540 42409254 -185115324 + L1MC2 LINE L1 5593 6333 -11 914 112 8 0 chr3 42409440 42409599 -185114979 + L1PA8 LINE L1 6014 6173 0 216 0 0 0 chr3 42411032 42411056 -185113522 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr3 42411786 42411832 -185112746 + AT_rich Low_complexity Low_complexity 1 46 0 593 345 47 13 chr3 42411937 42412172 -185112406 + MIR SINE MIR 19 261 -1 239 0 0 31 chr3 42412884 42412916 -185111662 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 456 304 121 38 chr3 42413291 42413630 -185110948 + MLT1I LTR MaLR 42 408 -1 2483 253 104 56 chr3 42415015 42415910 -185108668 + L1MDa LINE L1 27 964 -5576 439 209 43 0 chr3 42415917 42416032 -185108546 + L1MDa LINE L1 1750 1869 -4671 334 155 35 0 chr3 42416031 42416089 -185108489 - L1MA9 LINE L1 -230 6082 6023 * 645 229 0 0 chr3 42416090 42416230 -185108348 + L1MA9 LINE L1 6152 6291 -21 512 175 6 17 chr3 42416220 42416340 -185108238 + L1MCa LINE L1 1577 1837 -4589 * 1239 195 78 33 chr3 42416336 42416482 -185108096 + L1MD1 LINE L1 5894 6032 -210 2007 131 0 3 chr3 42416482 42416773 -185107805 + AluSg SINE Alu 1 290 -20 1239 195 78 33 chr3 42416773 42416960 -185107618 + L1MD1 LINE L1 6032 6242 0 367 323 55 76 chr3 42417238 42417566 -185107012 - L3 LINE CR1 -264 1313 993 721 48 39 10 chr3 42417597 42417701 -185106877 - AluYa5/8 SINE Alu 0 310 204 353 215 16 16 chr3 42417904 42418025 -185106553 + (TA)n Simple_repeat Simple_repeat 2 122 0 210 133 83 0 chr3 42418874 42418934 -185105644 + (TA)n Simple_repeat Simple_repeat 2 66 0 225 253 78 102 chr3 42420350 42420516 -185104062 - MER103 DNA DNA -1 165 4 3112 167 41 5 chr3 42421004 42421584 -185102994 - LTR26 LTR ERV1 -2 601 1 189 0 0 0 chr3 42421946 42421967 -185102611 + (GA)n Simple_repeat Simple_repeat 2 22 0 2064 128 3 25 chr3 42422160 42422479 -185102099 + AluSx SINE Alu 1 312 0 38 0 0 0 chr3 42422647 42422685 -185101893 + AT_rich Low_complexity Low_complexity 1 38 0 305 273 73 47 chr3 42422725 42422875 -185101703 + HAL1b LINE L1 754 907 -441 216 0 0 0 chr3 42423317 42423341 -185101237 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 342 45 0 0 chr3 42423733 42423777 -185100801 + (CA)n Simple_repeat Simple_repeat 1 44 0 573 356 35 58 chr3 42424021 42424453 -185100125 + L2 LINE L2 2423 2844 -470 21 0 0 0 chr3 42425046 42425067 -185099511 + AT_rich Low_complexity Low_complexity 1 21 0 615 252 18 66 chr3 42425435 42425661 -185098917 + L2 LINE L2 3097 3311 -2 23 33 0 0 chr3 42425661 42425691 -185098887 + AT_rich Low_complexity Low_complexity 1 30 0 2938 6 0 0 chr3 42425753 42426070 -185098508 - AluYb8 SINE Alu -1 317 1 211 133 67 0 chr3 42427009 42427054 -185097524 + T-rich Low_complexity Low_complexity 3 50 0 1526 225 18 63 chr3 42427072 42427468 -185097110 - MLT1B LTR MaLR -10 380 3 269 385 68 0 chr3 42427479 42427671 -185096907 + L2 LINE L2 1005 1209 -2105 605 327 151 22 chr3 42427945 42428449 -185096129 - L2 LINE L2 -8 3305 2748 2091 106 0 0 chr3 42429141 42429455 -185095123 + AluSx SINE Alu 1 314 0 266 184 0 0 chr3 42429492 42429541 -185095037 + AluSp SINE Alu 121 169 -134 22 0 0 0 chr3 42429837 42429859 -185094719 + AT_rich Low_complexity Low_complexity 1 22 0 246 32 0 0 chr3 42429891 42429922 -185094656 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 949 59 0 0 chr3 42429922 42430041 -185094537 - L1PA3 LINE L1 -13 6142 6024 792 80 9 0 chr3 42430041 42430153 -185094425 - L1P LINE L1 -1339 4807 4695 310 274 44 52 chr3 42430683 42430818 -185093760 - L2 LINE L2 0 3313 3180 357 290 136 15 chr3 42430917 42431372 -185093206 + L1MDa LINE L1 1913 2422 -4118 219 424 12 0 chr3 42431447 42431532 -185093046 - L2 LINE L2 -48 3224 3139 222 150 0 0 chr3 42431628 42431668 -185092910 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 227 0 0 chr3 42431787 42431831 -185092747 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 7065 48 16 0 chr3 42431914 42432916 -185091662 - L1PA3 LINE L1 -2 6153 5146 182 203 109 31 chr3 42433352 42433416 -185091162 - L3 LINE CR1 -220 1357 1289 750 138 113 59 chr3 42433636 42433839 -185090739 + AluSg/x SINE Alu 94 307 -3 2257 88 3 3 chr3 42433964 42434258 -185090320 - AluSc SINE Alu -15 294 1 21 36 0 0 chr3 42434387 42434415 -185090163 + AT_rich Low_complexity Low_complexity 1 28 0 396 335 75 69 chr3 42436555 42437105 -185087473 + HAL1 LINE L1 826 1378 -1129 22 80 0 0 chr3 42437392 42437442 -185087136 + AT_rich Low_complexity Low_complexity 1 50 0 615 72 0 0 chr3 42437998 42438081 -185086497 - AluS SINE Alu -230 83 1 5040 168 18 31 chr3 42438172 42438464 -185086114 - L1MA4 LINE L1 -11 6289 5995 2864 7 0 0 chr3 42438464 42438774 -185085804 - AluYa5 SINE Alu -1 310 1 5040 168 18 31 chr3 42438774 42439206 -185085372 - L1MA4 LINE L1 -305 5995 5559 2476 54 3 0 chr3 42439206 42439502 -185085076 - AluY SINE Alu -14 297 1 5040 168 18 31 chr3 42439502 42439978 -185084600 - L1MA4 LINE L1 -741 5559 5100 651 165 24 0 chr3 42439991 42440118 -185084460 - L1MA4 LINE L1 -1135 5011 4882 2437 205 44 4 chr3 42440119 42440621 -185083957 + L1 LINE L1 3357 3878 -2268 3302 142 5 40 chr3 42440624 42441243 -185083335 + L1PB4 LINE L1 5557 6153 -3 1778 107 95 0 chr3 42441274 42441620 -185082958 + L1P LINE L1 4441 4819 -1327 188 319 149 0 chr3 42443007 42443148 -185081430 - MIR SINE MIR -51 211 50 227 326 118 7 chr3 42443215 42443350 -185081228 + MIR SINE MIR 113 262 0 1663 167 31 3 chr3 42443963 42444250 -185080328 - AluSx SINE Alu -17 295 1 205 216 0 39 chr3 42444512 42444563 -185080015 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 249 146 0 0 chr3 42444842 42444889 -185079689 + MIR SINE MIR 64 111 -97 304 232 30 77 chr3 42445272 42445440 -185079138 - LTR16A1 LTR ERVL -1 456 297 458 192 0 0 chr3 42445443 42445521 -185079057 + MER5A DNA MER1_type 1 78 -111 369 256 26 8 chr3 42445669 42445786 -185078792 - LTR16A1 LTR ERVL -330 127 9 604 293 50 0 chr3 42445934 42446156 -185078422 - L1MB7 LINE L1 -19 6165 5933 1469 104 0 5 chr3 42446156 42446349 -185078229 - AluY SINE Alu -20 291 100 240 111 0 0 chr3 42446697 42446733 -185077845 + (TG)n Simple_repeat Simple_repeat 1 36 0 422 331 41 0 chr3 42446805 42446974 -185077604 + MLT1J LTR MaLR 2 177 -334 284 264 116 8 chr3 42447870 42447999 -185076579 - MER104 DNA Tc2 -3 177 35 2507 67 0 0 chr3 42448086 42448386 -185076192 - AluY SINE Alu -11 300 1 1063 299 81 28 chr3 42448529 42449388 -185075190 + L2 LINE L2 2357 3313 0 59 74 0 0 chr3 42450292 42450414 -185074164 + AT_rich Low_complexity Low_complexity 1 122 0 611 246 49 44 chr3 42450453 42450543 -185074035 + MER3 DNA MER1_type 6 94 -115 1876 164 27 21 chr3 42450543 42450878 -185073700 + MER1B DNA MER1_type 1 337 0 611 246 49 44 chr3 42450878 42450990 -185073588 + MER3 DNA MER1_type 94 209 0 231 253 58 58 chr3 42451546 42451633 -185072945 + L2 LINE L2 3185 3271 -1 2265 105 0 13 chr3 42452010 42452323 -185072255 - AluSc SINE Alu 0 309 1 30 27 0 0 chr3 42452767 42452804 -185071774 + AT_rich Low_complexity Low_complexity 1 37 0 183 318 95 8 chr3 42452869 42452995 -185071583 - MIR SINE MIR -1 261 125 354 274 0 0 chr3 42453670 42453816 -185070762 + (TA)n Simple_repeat Simple_repeat 1 146 0 2876 170 23 0 chr3 42453829 42454395 -185070183 + L1 LINE L1 4226 4804 -1342 10088 172 30 41 chr3 42454504 42455474 -185069104 - Tigger2 DNA MER2_type -689 2029 1050 2107 115 0 10 chr3 42455474 42455778 -185068800 - AluSc SINE Alu -8 301 1 10088 172 30 41 chr3 42455778 42456859 -185067719 - Tigger2 DNA MER2_type -1668 1050 1 221 139 23 0 chr3 42456859 42456902 -185067676 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 316 355 26 7 chr3 42457189 42457341 -185067237 + MIR SINE MIR 96 250 -12 5156 183 20 35 chr3 42458242 42459277 -185065301 - ERVL LTR ERVL -578 5186 4167 1053 215 0 5 chr3 42459265 42459465 -185065113 - ERVL LTR ERVL -3335 2429 2231 * 571 234 26 7 chr3 42459465 42459619 -185064959 - MLT2D LTR ERVL -257 157 1 2235 101 0 3 chr3 42459733 42460039 -185064539 - AluSc SINE Alu -4 305 1 10924 28 2 6 chr3 42460054 42462120 -185062458 + L1PA3 LINE L1 4093 6155 0 1823 152 0 4 chr3 42462245 42462514 -185062064 - AluSx SINE Alu -44 268 1 751 240 21 16 chr3 42462514 42462801 -185061777 + MER90 LTR ERV1 288 614 0 360 224 18 127 chr3 42464263 42464415 -185060163 + MIR SINE MIR 43 177 -62 24 0 0 0 chr3 42464648 42464672 -185059906 + AT_rich Low_complexity Low_complexity 1 24 0 209 281 0 0 chr3 42464714 42464771 -185059807 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 221 0 35 0 chr3 42464822 42464851 -185059727 + (TA)n Simple_repeat Simple_repeat 1 30 0 10221 207 52 16 chr3 42464978 42469811 -185054767 + L1PB1 LINE L1 6 5273 -1589 3397 173 31 114 chr3 42469929 42471021 -185053557 - L1 LINE L1 -863 5283 4283 21 57 0 0 chr3 42471515 42471550 -185053028 + AT_rich Low_complexity Low_complexity 1 35 0 269 273 23 11 chr3 42471748 42471836 -185052742 + L1M4 LINE L1 4075 4163 -1983 5440 158 19 30 chr3 42474251 42475397 -185049181 + L1PB1 LINE L1 5355 6479 -388 398 20 20 0 chr3 42475397 42475448 -185049130 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5440 158 19 30 chr3 42475448 42475832 -185048746 + L1PB1 LINE L1 6479 6866 -1 2156 130 0 0 chr3 42475844 42476137 -185048441 - AluSx SINE Alu -19 293 1 262 178 0 0 chr3 42476714 42476759 -185047819 - L1M1 LINE L1 -470 5835 5791 2793 142 11 0 chr3 42476770 42477236 -185047342 - L1M1 LINE L1 -490 5815 5345 2013 118 11 0 chr3 42477357 42477629 -185046949 + AluSx SINE Alu 27 301 -11 7355 36 11 5 chr3 42478118 42479232 -185045346 - L1PA4 LINE L1 -7 6148 5033 492 103 13 0 chr3 42479232 42479316 -185045262 + L1PA4 LINE L1 4956 5040 -1106 602 248 120 40 chr3 42480061 42480461 -185044117 + L1M4 LINE L1 4318 4749 -1397 37 39 0 0 chr3 42480605 42480656 -185043922 + AT_rich Low_complexity Low_complexity 1 51 0 34787 48 30 2 chr3 42480709 42485147 -185039431 + L1P LINE L1 3 4565 -1581 224 306 32 0 chr3 42485838 42485900 -185038678 - L2 LINE L2 -559 2755 2692 479 258 44 31 chr3 42486935 42487094 -185037484 - MIR SINE MIR -2 260 100 437 145 59 7 chr3 42487094 42487246 -185037332 + (TA)n Simple_repeat Simple_repeat 1 160 0 404 279 8 41 chr3 42487281 42487403 -185037175 - FLAM_A SINE Alu -15 118 1 319 93 37 0 chr3 42487405 42487459 -185037119 + L1MA5A LINE L1 6242 6297 0 269 227 159 11 chr3 42487493 42487581 -185036997 - MIR SINE MIR -160 102 2 302 338 6 45 chr3 42487976 42488133 -185036445 - MIR SINE MIR -60 202 52 219 305 43 21 chr3 42489549 42489690 -185034888 - MIR SINE MIR 0 262 119 2111 133 3 0 chr3 42489711 42490019 -185034559 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr3 42491190 42491218 -185033360 + AT_rich Low_complexity Low_complexity 1 28 0 201 94 0 0 chr3 42491555 42491587 -185032991 + (GA)n Simple_repeat Simple_repeat 1 32 0 1079 194 30 0 chr3 42492350 42492551 -185032027 + MSTB LTR MaLR 220 426 0 1980 145 96 0 chr3 42492564 42492896 -185031682 - THE1B LTR MaLR 0 364 1 10827 109 9 16 chr3 42492896 42494081 -185030497 - THE1B-int LTR MaLR 0 1580 407 1680 112 4 4 chr3 42494081 42494322 -185030256 - AluSg/x SINE Alu 0 312 72 10827 109 9 16 chr3 42494322 42494726 -185029852 - THE1B-int LTR MaLR -1173 407 2 2179 128 73 14 chr3 42494727 42495071 -185029507 - THE1B LTR MaLR 0 364 1 379 261 0 0 chr3 42495138 42495226 -185029352 + MER76 LTR ERV 317 404 -284 737 203 12 0 chr3 42495791 42495954 -185028624 - L1MB5 LINE L1 -8 6166 6002 2871 195 26 20 chr3 42495962 42496739 -185027839 - L1MB5 LINE L1 -280 5894 5115 232 315 69 31 chr3 42497318 42497448 -185027130 + MIR SINE MIR 2 136 -126 217 83 62 21 chr3 42497538 42497571 -185027007 + T-rich Low_complexity Low_complexity 5 42 -12 7412 32 4 0 chr3 42497571 42498851 -185025727 - L1PA3 LINE L1 -3 6152 4869 217 83 62 21 chr3 42498851 42498865 -185025713 + T-rich Low_complexity Low_complexity 42 54 0 21 0 0 0 chr3 42499440 42499461 -185025117 + AT_rich Low_complexity Low_complexity 1 21 0 2208 97 6 10 chr3 42500198 42500509 -185024069 + AluY SINE Alu 1 310 -1 207 0 0 0 chr3 42501204 42501227 -185023351 + (A)n Simple_repeat Simple_repeat 1 23 0 1254 196 45 54 chr3 42501823 42502154 -185022424 - L1MB7 LINE L1 -102 6082 5755 1148 261 83 23 chr3 42502172 42502248 -185022330 + L1M4 LINE L1 4844 4914 -1232 1709 173 47 36 chr3 42502248 42502607 -185021971 - MLT1A1 LTR MaLR -2 363 1 1148 261 83 23 chr3 42502607 42503058 -185021520 + L1M4 LINE L1 4914 5403 -743 329 122 19 149 chr3 42503581 42503688 -185020890 - LTR37B LTR ERV1 -177 291 199 324 263 82 23 chr3 42503930 42504101 -185020477 - L1ME3A LINE L1 -208 5962 5782 234 162 0 0 chr3 42504161 42504198 -185020380 - MLT1E LTR MaLR 0 593 557 * 258 239 0 30 chr3 42504195 42504262 -185020316 - MLT1H LTR MaLR -377 172 108 218 303 0 0 chr3 42504459 42504525 -185020053 - MIR SINE MIR -108 154 89 1409 288 17 53 chr3 42506262 42506794 -185017784 - HERVL LTR ERVL -1324 4440 3928 466 328 60 56 chr3 42506831 42507334 -185017244 - HERVL LTR ERVL -3967 1687 1183 189 195 0 0 chr3 42507547 42507588 -185016990 + GA-rich Low_complexity Low_complexity 1 41 0 316 363 19 12 chr3 42508507 42508667 -185015911 - HERVL LTR ERVL -5064 700 540 189 107 0 0 chr3 42508674 42508702 -185015876 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 80 0 0 chr3 42509370 42509420 -185015158 + AT_rich Low_complexity Low_complexity 1 50 0 288 309 85 24 chr3 42510306 42510471 -185014107 - MIR SINE MIR -6 256 82 678 272 130 45 chr3 42510917 42511432 -185013146 - L1ME LINE L1 -348 5822 5264 223 213 16 16 chr3 42511487 42511548 -185013030 + (TTA)n Simple_repeat Simple_repeat 3 63 0 189 0 0 0 chr3 42511878 42511899 -185012679 + (A)n Simple_repeat Simple_repeat 1 21 0 257 224 13 0 chr3 42513325 42513401 -185011177 + (TA)n Simple_repeat Simple_repeat 1 77 0 279 156 49 0 chr3 42513416 42513538 -185011040 + (TA)n Simple_repeat Simple_repeat 2 129 0 24 0 0 0 chr3 42514410 42514434 -185010144 + GC_rich Low_complexity Low_complexity 1 24 0 2554 185 20 13 chr3 42514534 42515542 -185009036 - L1M2 LINE L1 -537 5763 4746 2168 179 75 2 chr3 42515647 42516084 -185008494 + Tigger2 DNA MER2_type 2249 2717 -1 2082 181 24 9 chr3 42516331 42516756 -185007822 - L1MA6 LINE L1 -1 6299 5869 1590 173 66 0 chr3 42517322 42517594 -185006984 + AluSx SINE Alu 1 290 -22 633 168 194 11 chr3 42517608 42517799 -185006779 - MER5C DNA MER1_type -1 323 98 1011 132 7 0 chr3 42518421 42518573 -185006005 + LTR9 LTR ERV1 460 612 0 1394 153 80 49 chr3 42518584 42518872 -185005706 - AluSg SINE Alu -13 297 1 186 43 0 0 chr3 42519307 42519330 -185005248 + (A)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr3 42519941 42519965 -185004613 + GC_rich Low_complexity Low_complexity 1 24 0 1910 109 10 10 chr3 42520318 42520621 -185003957 + L1MA3 LINE L1 5797 6099 -206 955 181 45 15 chr3 42520621 42520820 -185003758 + MSTA LTR MaLR 1 205 -223 257 200 29 0 chr3 42521557 42521627 -185002951 + CT-rich Low_complexity Low_complexity 1 72 0 1710 172 19 16 chr3 42521627 42521935 -185002643 - AluSx SINE Alu -3 309 1 190 370 7 44 chr3 42521950 42522085 -185002493 + MER5A DNA MER1_type 56 185 -4 21 0 0 0 chr3 42523376 42523397 -185001181 + GC_rich Low_complexity Low_complexity 1 21 0 1947 114 0 0 chr3 42523925 42524189 -185000389 + AluSg1 SINE Alu 14 277 -32 293 218 23 46 chr3 42524472 42524559 -185000019 - L2 LINE L2 0 3313 3229 27 35 0 0 chr3 42524680 42524709 -184999869 + GC_rich Low_complexity Low_complexity 1 29 0 729 121 0 17 chr3 42624917 42625033 -184899545 + AluJb SINE Alu 199 312 0 22 0 0 0 chr3 42625586 42625608 -184898970 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 42625843 42625865 -184898713 + AT_rich Low_complexity Low_complexity 1 22 0 41684 43 4 0 chr3 42627214 42633111 -184891467 + L1PA4 LINE L1 228 6147 -8 1619 231 67 62 chr3 42633118 42633845 -184890733 - MER69 DNA AcHobo -150 2376 1646 2230 128 0 0 chr3 42633897 42634203 -184890375 - AluSq SINE Alu -7 306 1 323 297 25 17 chr3 42635267 42635385 -184889193 - MLT1J LTR MaLR -70 441 323 821 313 117 32 chr3 42635399 42635450 -184889128 + MLT1H1 LTR MaLR 9 54 -501 2225 116 0 0 chr3 42635450 42635751 -184888827 + AluSx SINE Alu 1 301 -11 821 313 117 32 chr3 42635751 42636197 -184888381 + MLT1H1 LTR MaLR 54 548 -7 728 256 58 68 chr3 42636204 42636512 -184888066 - MLT1J LTR MaLR -202 309 5 1621 264 84 7 chr3 42636607 42637061 -184887517 - MLT1E2 LTR MaLR -1 625 137 22 35 0 0 chr3 42637942 42637971 -184886607 + AT_rich Low_complexity Low_complexity 1 29 0 212 348 52 15 chr3 42638218 42638353 -184886225 - L2 LINE L2 -183 3089 2950 221 333 50 8 chr3 42639058 42639178 -184885400 + L3b LINE CR1 1121 1245 -338 225 0 0 0 chr3 42639559 42639584 -184884994 + (TTA)n Simple_repeat Simple_repeat 2 26 0 382 324 52 24 chr3 42640280 42640490 -184884088 + MIR SINE MIR 37 252 -10 223 325 12 0 chr3 42640655 42640735 -184883843 - MIR3 SINE MIR -3 205 125 30 17 8 0 chr3 42641256 42641339 -184883239 + AT_rich Low_complexity Low_complexity 1 37 0 3770 29 0 0 chr3 42641600 42642045 -184882533 + L1PA4 LINE L1 5708 6152 -3 2461 226 8 0 chr3 42643372 42643957 -184880621 + L1 LINE L1 4203 4792 -1354 1026 146 4 2 chr3 42643958 42644198 -184880380 + AluSx SINE Alu 1 290 -22 5387 167 20 17 chr3 42644199 42645547 -184879031 + L1PA16 LINE L1 4800 6157 -9 21 36 0 0 chr3 42646231 42646259 -184878319 + AT_rich Low_complexity Low_complexity 1 28 0 1243 196 21 17 chr3 42646996 42647236 -184877342 - AluJo SINE Alu -36 276 36 206 239 0 0 chr3 42647420 42647466 -184877112 - L2 LINE L2 -6 3266 3221 305 284 13 97 chr3 42649066 42649221 -184875357 + L2 LINE L2 2945 3086 -186 202 283 0 0 chr3 42649368 42649421 -184875157 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 26 0 0 0 chr3 42649617 42649643 -184874935 + AT_rich Low_complexity Low_complexity 1 26 0 691 216 7 0 chr3 42650702 42650850 -184873728 - L1M4 LINE L1 -453 5721 5573 1052 317 30 25 chr3 42650850 42651079 -184873499 - L2 LINE L2 -565 2749 2516 2166 114 0 7 chr3 42651079 42651376 -184873202 + AluSg SINE Alu 1 295 -15 1052 317 30 25 chr3 42651376 42651578 -184873000 - L2 LINE L2 -798 2516 2316 786 303 122 16 chr3 42651580 42651956 -184872622 - MLT1H LTR MaLR -1 548 133 21 36 0 0 chr3 42652035 42652063 -184872515 + AT_rich Low_complexity Low_complexity 1 28 0 199 328 114 8 chr3 42652126 42652257 -184872321 - L2 LINE L2 -1158 2156 2012 212 266 16 47 chr3 42652965 42653029 -184871549 - MIR SINE MIR -31 231 170 623 365 33 16 chr3 42653191 42653495 -184871083 + LTR16C LTR ERVL 183 491 0 8005 150 35 3 chr3 42653768 42655938 -184868640 + L1PA11 LINE L1 3973 6174 0 211 303 92 39 chr3 42656162 42656391 -184868187 - MIR SINE MIR 0 262 12 4151 165 20 37 chr3 42657147 42658012 -184866566 - L1MB2 LINE L1 -2 6169 5320 547 200 9 9 chr3 42658013 42658118 -184866460 - U6 snRNA snRNA 0 107 3 600 292 69 46 chr3 42658746 42659051 -184865527 + L2 LINE L2 2968 3279 -34 277 252 309 0 chr3 42659351 42659474 -184865104 - MER5A DNA MER1_type 0 189 29 378 337 101 46 chr3 42659507 42659982 -184864596 - L2 LINE L2 -669 2645 2145 414 286 125 29 chr3 42660431 42661016 -184863562 + L1MDa LINE L1 2439 3101 -3439 1831 143 3 39 chr3 42661161 42661469 -184863109 + AluSx SINE Alu 1 297 -15 1514 58 0 0 chr3 42661483 42661671 -184862907 - L1PA4 LINE L1 -350 5805 5618 2973 42 0 0 chr3 42661671 42662029 -184862549 + L1PA4 LINE L1 5794 6152 -3 31 44 0 0 chr3 42662799 42662844 -184861734 + AT_rich Low_complexity Low_complexity 1 45 0 1638 162 133 16 chr3 42663141 42663524 -184861054 + MSTA LTR MaLR 1 428 0 519 239 236 19 chr3 42663704 42663967 -184860611 - LTR50 LTR ERVL -475 320 1 607 255 103 94 chr3 42664509 42664936 -184859642 - MLT1H1 LTR MaLR 0 555 125 186 43 0 0 chr3 42665550 42665573 -184859005 + (TTA)n Simple_repeat Simple_repeat 2 24 0 231 287 11 23 chr3 42665838 42665925 -184858653 + L1MEd LINE L1 413 498 -6032 259 328 0 0 chr3 42666281 42666345 -184858233 + (CATG)n Simple_repeat Simple_repeat 3 66 0 203 234 31 0 chr3 42666776 42666840 -184857738 + (TA)n Simple_repeat Simple_repeat 1 66 0 266 268 71 50 chr3 42666917 42667115 -184857463 + L1MEd LINE L1 1442 1643 -4887 347 255 61 106 chr3 42667129 42667329 -184857249 + L1MEd LINE L1 1623 1809 -4731 1941 133 30 0 chr3 42667329 42667630 -184856948 + AluSx SINE Alu 1 310 -2 347 255 61 106 chr3 42667630 42667693 -184856885 + L1MEd LINE L1 1809 1873 -4667 304 230 61 31 chr3 42668101 42668317 -184856261 - L1MCc LINE L1 -4922 1501 1393 23 0 0 0 chr3 42668966 42668989 -184855589 + AT_rich Low_complexity Low_complexity 1 23 0 250 219 16 16 chr3 42669059 42669123 -184855455 - L1M LINE L1 -763 5415 5352 333 68 0 0 chr3 42669139 42669183 -184855395 + (TA)n Simple_repeat Simple_repeat 2 45 0 491 334 68 19 chr3 42669240 42669758 -184854820 - L1M4 LINE L1 -906 5240 4698 273 250 22 11 chr3 42669821 42669913 -184854665 - L1ME3 LINE L1 -7 6155 6063 294 29 0 0 chr3 42669930 42669965 -184854613 + (CA)n Simple_repeat Simple_repeat 2 36 0 475 301 88 72 chr3 42670041 42670347 -184854231 + MLT1H LTR MaLR 62 372 -177 551 303 38 60 chr3 42670638 42670828 -184853750 - L1M4 LINE L1 -1692 4454 4274 * 3575 41 0 2 chr3 42670815 42671250 -184853328 + L1PA5 LINE L1 5624 6057 -97 4301 28 0 0 chr3 42670828 42671336 -184853242 + L1PA5 LINE L1 5636 6143 -11 551 303 38 60 chr3 42671336 42671492 -184853086 - L1M4 LINE L1 -1872 4274 4116 228 316 16 37 chr3 42671500 42671687 -184852891 - L1M4 LINE L1 -2102 4044 3862 540 279 93 38 chr3 42672087 42672689 -184851889 - L1M4 LINE L1 -2979 3167 2533 436 268 39 7 chr3 42672704 42672881 -184851697 + L1MA10 LINE L1 5987 6330 -4 288 245 78 0 chr3 42672877 42672979 -184851599 + L1M4 LINE L1 3840 3949 -2197 * 216 67 0 0 chr3 42673054 42673084 -184851494 + (CA)n Simple_repeat Simple_repeat 2 31 0 656 260 31 0 chr3 42673296 42673492 -184851086 + MER105 DNA DNA 1 202 -2 24 32 0 0 chr3 42673858 42673889 -184850689 + AT_rich Low_complexity Low_complexity 1 31 0 2545 64 0 0 chr3 42674342 42674653 -184849925 - AluY SINE Alu 0 311 1 23 0 0 0 chr3 42674726 42674749 -184849829 + AT_rich Low_complexity Low_complexity 1 23 0 297 294 172 31 chr3 42674752 42675078 -184849500 - MLT1L LTR MaLR -27 588 217 860 235 48 118 chr3 42675207 42675624 -184848954 + MSTD LTR MaLR 9 396 0 348 226 89 16 chr3 42675816 42675940 -184848638 + MER94 DNA DNA 2 134 0 383 355 43 0 chr3 42676281 42676467 -184848111 + L2 LINE L2 3120 3313 0 9131 217 23 55 chr3 42676893 42679019 -184845559 + L1M2 LINE L1 3 2060 -4789 22221 189 17 17 chr3 42679022 42682615 -184841963 + L1PA11 LINE L1 2 3592 -4020 180 0 0 0 chr3 42682615 42682635 -184841943 + (CAA)n Simple_repeat Simple_repeat 2 21 0 22221 189 17 17 chr3 42682635 42683124 -184841454 + L1PA11 LINE L1 3592 4079 -3533 2078 147 0 0 chr3 42683124 42683424 -184841154 + AluSx SINE Alu 1 300 -12 22221 189 17 17 chr3 42683424 42685596 -184838982 + L1PA11 LINE L1 4079 7612 0 4353 196 42 33 chr3 42685571 42686817 -184837761 + L1M2 LINE L1 2044 3276 -3572 * 1563 195 0 29 chr3 42686817 42687125 -184837453 + AluJb SINE Alu 4 302 -10 4353 196 42 33 chr3 42687125 42687280 -184837298 + L1M2 LINE L1 3276 3428 -3420 1928 177 0 0 chr3 42687280 42687580 -184836998 - AluSx SINE Alu -12 300 1 4353 196 42 33 chr3 42687580 42687913 -184836665 + L1M2 LINE L1 3428 3792 -3056 21 36 0 0 chr3 42687933 42687961 -184836617 + AT_rich Low_complexity Low_complexity 1 28 0 368 320 176 29 chr3 42688106 42688787 -184835791 + L1M4 LINE L1 2678 3458 -2688 24 0 0 0 chr3 42688790 42688814 -184835764 + AT_rich Low_complexity Low_complexity 1 24 0 632 222 94 11 chr3 42689018 42689103 -184835475 - MER3 DNA MER1_type -1 208 131 2102 91 33 26 chr3 42689103 42689410 -184835168 - AluSx SINE Alu -1 311 3 632 222 94 11 chr3 42689410 42689504 -184835074 - MER3 DNA MER1_type -78 131 14 230 241 35 0 chr3 42689731 42689789 -184834789 - MIR SINE MIR -118 144 85 235 280 0 0 chr3 42690201 42690251 -184834327 + L2 LINE L2 3210 3259 -13 252 77 0 0 chr3 42690498 42690537 -184834041 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1757 143 68 3 chr3 42691261 42691582 -184832996 - AluSq SINE Alu 0 340 1 252 277 13 110 chr3 42692480 42692635 -184831943 - MIR SINE MIR -66 196 57 185 304 18 0 chr3 42693377 42693433 -184831145 - MIR SINE MIR -120 142 86 235 361 24 0 chr3 42693682 42693765 -184830813 - L3 LINE CR1 -27 1550 1466 2354 92 0 0 chr3 42694770 42695075 -184829503 + AluSg SINE Alu 1 305 -5 351 0 0 0 chr3 42695091 42695130 -184829448 + (TG)n Simple_repeat Simple_repeat 2 40 0 231 283 162 0 chr3 42697164 42697263 -184827315 + MIR3 SINE MIR 55 169 -39 1035 213 9 32 chr3 42697286 42697507 -184827071 - MER20 DNA MER1_type 0 219 4 1970 131 3 14 chr3 42698245 42698536 -184826042 - AluSx SINE Alu -24 288 1 326 206 0 0 chr3 42699552 42699625 -184824953 - L1MB8 LINE L1 -13 6165 6093 4036 208 26 27 chr3 42699637 42699750 -184824828 - L1MB4 LINE L1 0 6180 6068 2078 138 7 0 chr3 42699750 42700055 -184824523 - AluSx SINE Alu -5 307 1 4036 208 26 27 chr3 42700055 42700936 -184823642 - L1MB4 LINE L1 -112 6068 5202 2665 145 25 0 chr3 42700936 42701385 -184823193 - L1PB3 LINE L1 -5 6149 5690 4036 208 26 27 chr3 42701385 42701462 -184823116 - L1MB4 LINE L1 -978 5202 5126 895 271 27 9 chr3 42701794 42702019 -184822559 - L1M4b LINE L1 -6619 240 12 185 361 68 45 chr3 42703828 42703961 -184820617 - L2 LINE L2 0 3272 3137 468 0 0 0 chr3 42703972 42704024 -184820554 + (CA)n Simple_repeat Simple_repeat 1 52 0 5942 29 0 0 chr3 42705101 42705835 -184818743 + L1PA3 LINE L1 5444 6177 0 457 253 11 68 chr3 42707427 42707617 -184816961 + MER96B DNA MER1_type? 1 179 -238 311 335 88 29 chr3 42708903 42709312 -184815266 + HAL1 LINE L1 1208 1640 -867 2029 136 3 0 chr3 42709354 42709655 -184814923 - AluSg SINE Alu -8 302 1 327 248 21 28 chr3 42709786 42710070 -184814508 + (CAATA)n Simple_repeat Simple_repeat 1 281 0 320 294 70 7 chr3 42710250 42710393 -184814185 + HAL1b LINE L1 760 911 -437 181 57 57 0 chr3 42710589 42710624 -184813954 + (TA)n Simple_repeat Simple_repeat 2 38 0 2782 142 29 0 chr3 42711502 42711954 -184812624 + LTR24 LTR ERV1 3 467 0 2020 139 0 7 chr3 42712421 42712731 -184811847 - AluSq SINE Alu -5 308 1 37 23 0 0 chr3 42712821 42712865 -184811713 + AT_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr3 42712960 42712997 -184811581 + AT_rich Low_complexity Low_complexity 1 37 0 213 154 0 0 chr3 42713687 42713726 -184810852 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 237 70 23 chr3 42713836 42713972 -184810606 + MER5B DNA MER1_type 4 129 -49 2079 135 3 0 chr3 42715057 42715360 -184809218 + AluSg SINE Alu 4 307 -3 1927 157 25 16 chr3 42715920 42716284 -184808294 + LTR23 LTR ERV1 71 437 0 203 288 34 17 chr3 42716717 42716776 -184807802 - MIR3 SINE MIR -41 167 108 2040 110 0 31 chr3 42717900 42718241 -184806337 + AluSg SINE Alu 1 332 0 239 222 62 12 chr3 42718490 42718571 -184806007 + L1ME LINE L1 3875 3959 -2187 182 219 24 0 chr3 42718806 42718847 -184805731 + L2 LINE L2 3186 3227 -86 445 291 102 55 chr3 42719710 42720054 -184804524 + L1ME LINE L1 5296 5655 -466 376 292 125 16 chr3 42721036 42721228 -184803350 - MLT1L LTR MaLR -221 394 182 22 70 0 0 chr3 42721522 42721565 -184803013 + AT_rich Low_complexity Low_complexity 1 43 0 266 350 25 17 chr3 42722943 42723063 -184801515 - MIR SINE MIR -15 247 127 2111 194 84 98 chr3 42723082 42723819 -184800759 - LTR8A LTR ERV1 0 727 1 1117 289 23 3 chr3 42723821 42724126 -184800452 - HUERS-P1 LTR ERV1 -1 6262 5952 2838 155 2 2 chr3 42724231 42724847 -184799731 - L1PA14 LINE L1 -700 5451 4842 5175 90 3 4 chr3 42724848 42725569 -184799009 + L1PA14 LINE L1 5438 6157 -4 5581 206 111 109 chr3 42725622 42726796 -184797782 - HUERS-P1 LTR ERV1 -411 5852 4681 851 195 30 0 chr3 42726796 42726965 -184797613 + FRAM SINE Alu 1 173 -3 5581 206 111 109 chr3 42726965 42728371 -184796207 - HUERS-P1 LTR ERV1 -1582 4681 3101 1119 288 121 33 chr3 42728597 42728783 -184795795 - MLT1G LTR MaLR -24 566 398 2221 183 39 7 chr3 42728783 42729194 -184795384 - MSTB LTR MaLR -2 424 1 1119 288 121 33 chr3 42729194 42729563 -184795015 - MLT1G LTR MaLR -192 398 1 2714 96 0 0 chr3 42729936 42730300 -184794278 - THE1B LTR MaLR 0 364 1 264 252 79 47 chr3 42730796 42730923 -184793655 - Charlie8 DNA MER1_type -2212 205 75 509 354 63 67 chr3 42731665 42732202 -184792376 - L1MC/D LINE L1 -1988 5820 5286 3105 225 76 36 chr3 42732264 42733492 -184791086 - L1MA6 LINE L1 -10 6290 5019 3141 205 20 10 chr3 42733512 42734204 -184790374 - L1MA6 LINE L1 -1701 4445 3747 487 196 0 11 chr3 42734205 42734297 -184790281 + Tigger2a DNA MER2_type 1 91 -343 207 0 0 0 chr3 42734328 42734351 -184790227 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 438 69 0 0 chr3 42734350 42734408 -184790170 + (TA)n Simple_repeat Simple_repeat 1 58 0 1717 200 47 6 chr3 42734435 42734775 -184789803 + Tigger2a DNA MER2_type 91 444 0 5030 227 30 17 chr3 42734812 42736220 -184788358 - L1MA6 LINE L1 -2468 3678 2253 2197 157 19 11 chr3 42736230 42736605 -184787973 - Tigger1 DNA MER2_type -1993 425 48 34 72 0 0 chr3 42736668 42736737 -184787841 + AT_rich Low_complexity Low_complexity 1 69 0 534 292 101 29 chr3 42737592 42738296 -184786282 + L1ME LINE L1 717 1527 -4734 1018 309 40 13 chr3 42738412 42739034 -184785544 + L1ME LINE L1 3140 3778 -2302 * 1453 219 156 11 chr3 42739027 42739466 -184785112 + L1ME3A LINE L1 5654 6154 -10 22 70 0 0 chr3 42740247 42740290 -184784288 + AT_rich Low_complexity Low_complexity 1 43 0 201 182 0 0 chr3 42741884 42741917 -184782661 + T-rich Low_complexity Low_complexity 6 38 0 474 75 0 0 chr3 42742850 42742917 -184781661 + (ATG)n Simple_repeat Simple_repeat 2 68 0 501 203 14 7 chr3 42743552 42743700 -184780878 + GA-rich Low_complexity Low_complexity 3 151 0 1256 186 74 35 chr3 42743757 42744069 -184780509 - MER33 DNA MER1_type 0 324 1 693 241 123 6 chr3 42744069 42744239 -184780339 + LTR16A1 LTR ERVL 265 454 -3 432 293 153 0 chr3 42745421 42745571 -184779007 + MIR3 SINE MIR 36 208 0 206 208 83 0 chr3 42745721 42745769 -184778809 + MIR SINE MIR 128 179 -83 247 353 29 29 chr3 42747178 42747314 -184777264 - L2 LINE L2 0 3272 3137 309 318 71 56 chr3 42747618 42747816 -184776762 + MIR SINE MIR 2 202 -60 1668 222 34 49 chr3 42748371 42748840 -184775738 - MLT1C LTR MaLR 0 467 6 23 33 0 0 chr3 42749231 42749261 -184775317 + AT_rich Low_complexity Low_complexity 1 30 0 245 318 68 11 chr3 42749906 42749994 -184774584 + L2 LINE L2 2889 2981 -291 24 0 0 0 chr3 42750048 42750072 -184774506 + AT_rich Low_complexity Low_complexity 1 24 0 271 263 29 44 chr3 42750289 42750426 -184774152 - MLT1L LTR MaLR -296 319 185 180 97 0 0 chr3 42750759 42750790 -184773788 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 119 356 0 chr3 42750804 42750863 -184773715 - MADE1 DNA Mariner 0 80 1 580 282 92 0 chr3 42751100 42751274 -184773304 + MER3 DNA MER1_type 15 204 -5 214 258 299 0 chr3 42752072 42752169 -184772409 + MIR SINE MIR 81 206 -56 27 49 0 0 chr3 42754501 42754542 -184770036 + AT_rich Low_complexity Low_complexity 1 41 0 544 235 39 26 chr3 42755152 42755305 -184769273 + MIR SINE MIR 69 223 -39 342 264 107 61 chr3 42755734 42755995 -184768583 + L1MC2 LINE L1 1127 1399 -5235 199 128 26 39 chr3 42755999 42756011 -184768567 + (TA)n Simple_repeat Simple_repeat 2 13 -65 593 88 0 0 chr3 42756011 42756091 -184768487 + MADE1 DNA Mariner 1 80 0 199 128 26 39 chr3 42756091 42756156 -184768422 + (TA)n Simple_repeat Simple_repeat 13 78 0 3165 250 30 3 chr3 42756158 42757038 -184767540 + L1MC2 LINE L1 4954 5856 -788 3900 185 27 28 chr3 42757044 42757486 -184767092 + L1MC2 LINE L1 5944 6385 -457 2084 127 38 24 chr3 42757486 42757856 -184766722 - THE1C LTR MaLR 0 375 1 3900 185 27 28 chr3 42757856 42758304 -184766274 + L1MC2 LINE L1 6385 6833 -9 303 332 28 65 chr3 42758305 42758522 -184766056 + L1ME LINE L1 1297 1505 -5037 558 296 72 35 chr3 42758569 42758917 -184765661 + L1ME LINE L1 1649 2009 -4816 228 182 55 0 chr3 42758998 42759053 -184765525 - L1ME LINE L1 -385 5777 5720 307 256 23 0 chr3 42759055 42759141 -184765437 - MIR SINE MIR -3 259 172 442 208 8 67 chr3 42759141 42759261 -184765317 - MER63 DNA MER1_type -97 739 1 186 43 0 0 chr3 42759795 42759818 -184764760 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 338 276 188 21 chr3 42760258 42760450 -184764128 + MIR SINE MIR 25 248 -14 416 349 13 7 chr3 42760635 42760787 -184763791 - MER5A DNA MER1_type -1 188 36 252 369 34 13 chr3 42760653 42760802 -184763776 + MER5A DNA MER1_type 32 183 -6 * 725 256 44 0 chr3 42761129 42761289 -184763289 + MER45A DNA AcHobo 1 167 -11 251 358 33 0 chr3 42762203 42762323 -184762255 + MIR SINE MIR 49 172 -90 2257 84 0 0 chr3 42762754 42763050 -184761528 + AluY SINE Alu 1 296 -15 889 174 20 61 chr3 42763196 42763392 -184761186 - MER5A DNA MER1_type -1 188 1 273 98 0 0 chr3 42763927 42763968 -184760610 + (TG)n Simple_repeat Simple_repeat 2 42 0 414 283 113 70 chr3 42765272 42765732 -184758846 + HAL1 LINE L1 875 1354 -1153 294 393 27 9 chr3 42765735 42765954 -184758624 + L1MEc LINE L1 149 371 -6025 338 322 7 13 chr3 42766314 42766466 -184758112 + L1MEc LINE L1 705 855 -5541 2061 261 66 53 chr3 42766489 42767311 -184757267 + L1MEc LINE L1 1995 2808 -3407 1745 170 97 30 chr3 42767311 42767712 -184756866 - MSTC LTR MaLR 0 428 1 2061 261 66 53 chr3 42767712 42768467 -184756111 + L1MEc LINE L1 2808 3552 -2663 1446 338 62 7 chr3 42768472 42769035 -184755543 + L1PA13 LINE L1 19 612 -6175 9037 243 30 10 chr3 42769311 42770471 -184754107 + L1PA13 LINE L1 1341 2477 -4320 1960 117 6 50 chr3 42770471 42770788 -184753790 - AluSq SINE Alu -10 303 1 9037 243 30 10 chr3 42770788 42773365 -184751213 + L1PA13 LINE L1 2477 5166 -1631 264 272 174 10 chr3 42773384 42773579 -184750999 + L1MEc LINE L1 4496 4722 -1493 357 226 68 55 chr3 42773645 42773791 -184750787 + L1MEc LINE L1 4925 5072 -1143 23 33 0 0 chr3 42773875 42773905 -184750673 + AT_rich Low_complexity Low_complexity 1 30 0 1748 201 28 42 chr3 42773991 42774390 -184750188 - Charlie1 DNA MER1_type 0 2761 2369 1403 205 16 68 chr3 42774390 42774620 -184749958 - MLT1A1 LTR MaLR 0 365 161 2264 117 0 0 chr3 42774620 42774929 -184749649 - AluSg SINE Alu -1 309 1 1403 205 16 68 chr3 42774929 42775083 -184749495 - MLT1A1 LTR MaLR -204 161 1 1748 201 28 42 chr3 42775083 42775185 -184749393 - Charlie1 DNA MER1_type -392 2369 2267 822 227 23 0 chr3 42775187 42775359 -184749219 + FRAM SINE Alu 1 174 -2 605 204 22 0 chr3 42775363 42775500 -184749078 - Charlie1 DNA MER1_type -483 2278 2139 513 331 33 18 chr3 42776282 42776557 -184748021 - MLT1K LTR MaLR -54 534 256 738 124 0 0 chr3 42777384 42777505 -184747073 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 189 121 0 0 chr3 42777921 42777954 -184746624 + (CA)n Simple_repeat Simple_repeat 2 34 0 318 286 67 8 chr3 42778854 42778973 -184745605 + MLT1H LTR MaLR 1 126 -423 1617 212 11 72 chr3 42779019 42779476 -184745102 + MER63B DNA MER1_type 2 430 -6 907 278 77 84 chr3 42780579 42781199 -184743379 + L2 LINE L2 2692 3313 0 215 118 0 0 chr3 42782506 42782540 -184742038 + MIR SINE MIR 203 236 -26 267 321 224 28 chr3 42782611 42782901 -184741677 - L2 LINE L2 -571 2743 2397 2663 39 0 3 chr3 42783670 42783982 -184740596 + AluY SINE Alu 1 311 0 274 305 12 0 chr3 42783996 42784078 -184740500 - L2 LINE L2 -596 2718 2636 1996 148 3 0 chr3 42784121 42784418 -184740160 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 42784418 42784446 -184740132 + AT_rich Low_complexity Low_complexity 1 28 0 419 294 239 6 chr3 42784648 42784828 -184739750 + MIR SINE MIR 41 262 0 275 281 50 38 chr3 42785670 42785830 -184738748 + MIR3 SINE MIR 40 201 -7 377 359 0 0 chr3 42786227 42786344 -184738234 + L2 LINE L2 3197 3313 0 786 311 111 37 chr3 42786432 42786892 -184737686 - MLT1G LTR MaLR 0 590 97 21 57 0 0 chr3 42787182 42787217 -184737361 + AT_rich Low_complexity Low_complexity 1 35 0 386 127 14 0 chr3 42787724 42787795 -184736783 + (CA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr3 42788114 42788137 -184736441 + AT_rich Low_complexity Low_complexity 1 23 0 215 329 4 123 chr3 42788674 42788742 -184735836 - MIR SINE MIR -59 203 129 2412 85 3 0 chr3 42788742 42789049 -184735529 - AluY SINE Alu -3 308 1 215 329 4 123 chr3 42789049 42789208 -184735370 - MIR SINE MIR -133 129 3 1141 203 22 4 chr3 42790756 42790988 -184733590 - MER96B DNA MER1_type? -181 236 1 180 0 0 0 chr3 42791022 42791042 -184733536 + (T)n Simple_repeat Simple_repeat 1 20 0 330 280 34 0 chr3 42792170 42792288 -184732290 + MER103 DNA DNA 1 122 -44 2341 115 56 8 chr3 42792307 42792664 -184731914 - THE1C LTR MaLR 0 375 2 10099 128 32 7 chr3 42792665 42794062 -184730516 - THE1C-int LTR MaLR 0 1580 139 1997 157 49 76 chr3 42794062 42794508 -184730070 + MER61C LTR ERV1 1 434 0 10099 128 32 7 chr3 42794508 42794651 -184729927 - THE1C-int LTR MaLR -1441 139 1 2554 120 5 8 chr3 42794651 42795027 -184729551 - THE1C LTR MaLR 0 375 1 255 152 0 0 chr3 42796103 42796149 -184728429 + (AATTG)n Simple_repeat Simple_repeat 3 48 0 191 254 15 60 chr3 42797021 42797088 -184727490 + MIR SINE MIR 79 142 -66 545 380 16 8 chr3 42797104 42797354 -184727224 - MIR SINE MIR -8 254 3 1547 91 0 0 chr3 42798202 42798410 -184726168 - AluY SINE Alu -3 308 101 201 308 132 22 chr3 42798830 42798921 -184725657 - L2 LINE L2 -5 3267 3167 1054 172 23 16 chr3 42799311 42799639 -184724939 + L1PA16 LINE L1 5147 5476 -690 1201 150 13 53 chr3 42799639 42799865 -184724713 + AluJb SINE Alu 87 303 -9 2112 135 7 0 chr3 42799865 42800169 -184724409 + AluSp SINE Alu 1 306 -7 4071 137 27 3 chr3 42800180 42800845 -184723733 + L1PA16 LINE L1 5477 6157 -9 21 36 0 0 chr3 42802571 42802599 -184721979 + AT_rich Low_complexity Low_complexity 1 28 0 553 298 181 19 chr3 42803939 42804358 -184720220 - MLT1H LTR MaLR -2 547 61 1240 204 23 77 chr3 42804980 42805422 -184719156 - Charlie1 DNA MER1_type -1 2760 2343 251 268 0 0 chr3 42805419 42805475 -184719103 - Charlie1 DNA MER1_type -2698 63 8 * 198 268 52 0 chr3 42806276 42806354 -184718224 + MIR SINE MIR 71 147 -61 225 361 96 0 chr3 42806790 42806956 -184717622 - MIR SINE MIR -74 188 7 195 42 0 0 chr3 42807281 42807305 -184717273 + (ATG)n Simple_repeat Simple_repeat 2 25 0 240 393 130 20 chr3 42808142 42808804 -184715774 - L2 LINE L2 -609 2705 1971 517 385 88 18 chr3 42808905 42809646 -184714932 - L2 LINE L2 -522 2792 2000 2217 117 0 0 chr3 42809671 42809978 -184714600 + AluSc SINE Alu 1 307 -2 315 318 82 29 chr3 42810931 42811101 -184713477 + MIR SINE MIR 70 248 -14 28 29 0 0 chr3 42812481 42812516 -184712062 + AT_rich Low_complexity Low_complexity 1 35 0 378 217 0 0 chr3 42812687 42812802 -184711776 + (TA)n Simple_repeat Simple_repeat 2 116 0 281 303 49 37 chr3 42813461 42813623 -184710955 - MIR SINE MIR -50 212 49 363 339 31 26 chr3 42813627 42813819 -184710759 - L2 LINE L2 -1 3312 3120 287 299 124 60 chr3 42814497 42814686 -184709892 + MIR SINE MIR 10 207 -55 2733 136 19 0 chr3 42814977 42815397 -184709181 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr3 42815771 42815793 -184708785 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2889 16 0 0 chr3 42817669 42817987 -184706591 - AluYb8 SINE Alu 0 318 1 197 303 67 106 chr3 42818417 42818625 -184705953 - L3 LINE CR1 -12 1565 1366 369 302 26 68 chr3 42818863 42819055 -184705523 + MIR SINE MIR 42 225 -37 331 248 108 31 chr3 42820073 42820202 -184704376 + MIR SINE MIR 74 212 -50 261 0 0 0 chr3 42820273 42820302 -184704276 + (TG)n Simple_repeat Simple_repeat 2 30 0 603 212 104 37 chr3 42820561 42820802 -184703776 - MER63 DNA MER1_type 0 1061 805 1324 186 156 16 chr3 42820831 42821138 -184703440 + MLT1F1 LTR MaLR 120 469 -98 322 376 28 14 chr3 42821341 42821628 -184702950 - MER89-int LTR ERV1 -3082 3719 3429 27 62 0 0 chr3 42822448 42822496 -184702082 + AT_rich Low_complexity Low_complexity 1 48 0 29 60 0 0 chr3 42823007 42823057 -184701521 + AT_rich Low_complexity Low_complexity 1 50 0 312 27 0 0 chr3 42824331 42824368 -184700210 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 21 36 0 0 chr3 42825253 42825281 -184699297 + AT_rich Low_complexity Low_complexity 1 28 0 237 346 0 19 chr3 42825341 42825445 -184699133 - HAL1 LINE L1 -803 1704 1603 198 380 58 7 chr3 42825448 42825585 -184698993 - L2 LINE L2 -202 3070 2927 324 322 46 54 chr3 42825839 42826100 -184698478 - L2 LINE L2 -616 2698 2440 2224 69 29 0 chr3 42827239 42827514 -184697064 + AluY SINE Alu 21 303 -8 3934 141 9 3 chr3 42828248 42828879 -184695699 + L1PB3 LINE L1 5520 6154 0 21 0 0 0 chr3 42828879 42828900 -184695678 + AT_rich Low_complexity Low_complexity 1 21 0 3523 263 102 92 chr3 42828985 42829346 -184695232 + L2 LINE L2 455 811 -2503 2056 103 32 3 chr3 42829346 42829628 -184694950 - AluSc SINE Alu -19 290 1 3523 263 102 92 chr3 42829628 42830065 -184694513 + L2 LINE L2 811 1242 -2072 1150 199 145 15 chr3 42830065 42830327 -184694251 - AluJo SINE Alu -4 298 3 3523 263 102 92 chr3 42830327 42830924 -184693654 + L2 LINE L2 1242 1832 -1482 326 322 9 9 chr3 42830924 42831039 -184693539 - MER94 DNA DNA -4 130 16 3523 263 102 92 chr3 42831039 42831653 -184692925 + L2 LINE L2 1832 2600 -714 5606 202 48 39 chr3 42831981 42834831 -184689747 - L1MC2 LINE L1 -2 6760 3891 2207 135 19 14 chr3 42834836 42835198 -184689380 + THE1B LTR MaLR 1 364 0 2563 247 94 34 chr3 42835199 42836126 -184688452 - L1MC2 LINE L1 -2825 3739 2756 1496 223 21 116 chr3 42836126 42836696 -184687882 + MLT2B1 LTR ERVL 5 520 0 2563 247 94 34 chr3 42836696 42837009 -184687569 - L1MC2 LINE L1 -3808 2756 2463 3349 200 89 40 chr3 42837028 42838384 -184686194 - L1MC2 LINE L1 -4399 2165 696 2648 196 55 62 chr3 42838384 42839077 -184685501 + LTR8 LTR ERV1 3 690 -1 3349 200 89 40 chr3 42839077 42839164 -184685414 - L1MC2 LINE L1 -5868 696 615 244 220 0 0 chr3 42839551 42839601 -184684977 - L1MC2 LINE L1 -5418 627 578 2846 187 16 82 chr3 42839626 42840337 -184684241 - MER4D LTR ERV1 -2 901 238 1510 186 28 14 chr3 42840400 42840690 -184683888 - MER49 LTR ERV1 -629 294 1 3311 141 2 42 chr3 42840810 42841357 -184683221 + MER61E LTR ERV1 1 525 -44 895 227 25 5 chr3 42841362 42841560 -184683018 - L1MC2 LINE L1 -5847 717 516 1023 187 26 130 chr3 42841806 42842153 -184682425 - MER67D LTR ERV1 -203 311 1 234 162 0 0 chr3 42842153 42842190 -184682388 + L2 LINE L2 2593 2629 -685 27 0 0 0 chr3 42842241 42842268 -184682310 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 42842371 42842399 -184682179 + AT_rich Low_complexity Low_complexity 1 28 0 669 298 17 57 chr3 42842432 42842785 -184681793 - MLT1H LTR MaLR -187 362 24 314 266 95 44 chr3 42842809 42842967 -184681611 + L2 LINE L2 3148 3313 0 563 182 26 47 chr3 42843799 42843991 -184680587 - MER53 DNA DNA -1 188 1 2321 106 0 0 chr3 42844104 42844407 -184680171 + AluY SINE Alu 1 303 -8 220 284 45 0 chr3 42844909 42844976 -184679602 + MIR SINE MIR 59 128 -80 818 285 183 43 chr3 42844988 42845925 -184678653 - L2 LINE L2 -8 3305 2219 1917 141 0 23 chr3 42846270 42846574 -184678004 - AluSx SINE Alu -15 297 1 1393 157 113 7 chr3 42846627 42846901 -184677677 + MER44D DNA MER2_type 1 573 -36 589 272 56 21 chr3 42847817 42848128 -184676450 + MLT1H1 LTR MaLR 8 373 -222 29 47 0 0 chr3 42848573 42848616 -184675962 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr3 42848710 42848733 -184675845 + AT_rich Low_complexity Low_complexity 1 23 0 352 303 128 5 chr3 42850181 42850376 -184674202 + L1ME3A LINE L1 3516 3734 -2412 1418 256 77 90 chr3 42850475 42851231 -184673347 + L1ME3A LINE L1 4487 5251 -919 360 64 0 0 chr3 42851231 42851278 -184673300 + (CA)n Simple_repeat Simple_repeat 2 48 0 1418 256 77 90 chr3 42851278 42852216 -184672362 + L1ME3A LINE L1 5251 6165 -5 320 333 27 4 chr3 42852254 42852479 -184672099 + L1ME3 LINE L1 4617 4846 -1300 1095 298 74 9 chr3 42852612 42853287 -184671291 + L1ME3 LINE L1 5254 5972 -190 348 143 0 0 chr3 42853320 42853383 -184671195 + L1M LINE L1 5254 5316 -988 382 339 35 32 chr3 42853401 42853770 -184670808 + L1PA12 LINE L1 2 371 -7210 2211 212 44 30 chr3 42854818 42855691 -184668887 + L1PA12 LINE L1 2328 3266 -4318 28840 49 48 2 chr3 42855708 42859387 -184665191 + L1P LINE L1 9 3857 -2289 2464 107 10 0 chr3 42859383 42859766 -184664812 - L1P LINE L1 -743 5403 5017 * 3509 232 33 4 chr3 42859754 42860663 -184663915 + L1PA12 LINE L1 3766 4700 -2884 3040 163 26 66 chr3 42860679 42860995 -184663583 + L1MA4 LINE L1 5474 5801 -499 249 57 0 0 chr3 42860995 42861030 -184663548 + (TA)n Simple_repeat Simple_repeat 2 36 0 3040 163 26 66 chr3 42861030 42861408 -184663170 + L1MA4 LINE L1 5801 6140 -160 1222 269 87 17 chr3 42861541 42862136 -184662442 + HAL1b LINE L1 696 1332 -16 390 252 203 0 chr3 42862849 42862972 -184661606 - MER5A DNA MER1_type -6 183 36 239 250 62 25 chr3 42863043 42863123 -184661455 + L2 LINE L2 3188 3270 -2 180 294 110 28 chr3 42864669 42864778 -184659800 + L2 LINE L2 3196 3313 0 1681 158 91 32 chr3 42864983 42865339 -184659239 - THE1C LTR MaLR 0 375 2 1079 265 22 63 chr3 42866076 42866488 -184658090 + L1MCb LINE L1 77 471 -5574 234 295 67 27 chr3 42866982 42867206 -184657372 - HAL1b LINE L1 -25 1323 1091 205 309 0 0 chr3 42867489 42867544 -184657034 + (CA)n Simple_repeat Simple_repeat 2 56 0 485 312 130 14 chr3 42867579 42867925 -184656653 + HAL1 LINE L1 1475 1860 -647 328 313 124 62 chr3 42867955 42868373 -184656205 + HAL1 LINE L1 2060 2503 -4 598 288 63 62 chr3 42868375 42868976 -184655602 - HAL1b LINE L1 -265 1083 482 4830 83 74 109 chr3 42869589 42870445 -184654133 - LTR12 LTR ERV1 0 826 1 408 339 39 17 chr3 42871715 42871948 -184652630 - L1ME LINE L1 -479 5642 5405 3095 132 18 14 chr3 42872476 42872977 -184651601 + L1PA16 LINE L1 5664 6166 0 2512 110 13 11 chr3 42873231 42873605 -184650973 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr3 42873838 42873883 -184650695 + AT_rich Low_complexity Low_complexity 1 45 0 2719 251 75 29 chr3 42874875 42876046 -184648532 - L1ME LINE L1 -907 5239 4015 1201 143 46 0 chr3 42876058 42876274 -184648304 - Tigger7 DNA MER2_type -1 2490 2265 287 204 0 0 chr3 42876271 42876320 -184648258 - Tigger7 DNA MER2_type -501 49 1 * 2722 267 73 16 chr3 42876359 42877560 -184647018 - L1ME LINE L1 -2473 3673 2404 1704 204 22 113 chr3 42877570 42878153 -184646425 - L1MA9 LINE L1 -271 6041 5512 1623 141 145 7 chr3 42878158 42878462 -184646116 + THE1C LTR MaLR 1 346 -29 198 0 0 0 chr3 42878462 42878484 -184646094 + (TTA)n Simple_repeat Simple_repeat 3 24 0 38516 63 42 0 chr3 42878484 42884355 -184640223 - L1PA5 LINE L1 -18 6136 11 256 167 0 0 chr3 42884361 42884403 -184640175 + THE1C LTR MaLR 387 428 0 1397 151 11 19 chr3 42884411 42884806 -184639772 - L1MA9 LINE L1 -746 5400 5107 27 49 0 0 chr3 42884837 42884878 -184639700 + AT_rich Low_complexity Low_complexity 1 41 0 192 40 0 0 chr3 42885489 42885514 -184639064 + (TG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr3 42886670 42886690 -184637888 + (TTA)n Simple_repeat Simple_repeat 2 21 0 324 0 0 0 chr3 42888196 42888232 -184636346 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1693 242 56 19 chr3 42888500 42888980 -184635598 - MLT1D LTR MaLR 0 505 8 246 288 0 0 chr3 42889155 42889221 -184635357 + MER116 DNA Mariner 1 66 -14 543 261 60 27 chr3 42889230 42889414 -184635164 - MIR SINE MIR -57 205 16 223 309 0 0 chr3 42889618 42889702 -184634876 + A-rich Low_complexity Low_complexity 1 84 0 221 216 0 0 chr3 42889886 42889923 -184634655 + polypurine Low_complexity Low_complexity 2 38 0 235 293 49 0 chr3 42890149 42890231 -184634347 + L1MC4 LINE L1 6618 6703 -1339 2255 115 0 0 chr3 42890258 42890553 -184634025 + AluSg SINE Alu 1 295 -15 956 241 59 96 chr3 42891394 42891670 -184632908 - MLT2C2 LTR ERVL -2 462 210 2453 30 40 16 chr3 42891670 42891974 -184632604 + AluY SINE Alu 1 311 0 956 241 59 96 chr3 42891974 42892175 -184632403 - MLT2C2 LTR ERVL -254 210 3 24 32 0 0 chr3 42892790 42892821 -184631757 + AT_rich Low_complexity Low_complexity 1 31 0 237 262 97 97 chr3 42894590 42894735 -184629843 - MIR SINE MIR -69 193 49 236 233 224 43 chr3 42895644 42895760 -184628818 - MIR SINE MIR -17 245 109 652 251 73 11 chr3 42895865 42896056 -184628522 - MIR SINE MIR -58 204 2 21 0 0 0 chr3 42896072 42896093 -184628485 + AT_rich Low_complexity Low_complexity 1 21 0 605 210 25 0 chr3 42896105 42896224 -184628354 + FLAM_C SINE Alu 1 122 -21 412 301 31 31 chr3 42896850 42897013 -184627565 - L2 LINE L2 -6 3307 3145 180 343 146 19 chr3 42897211 42897424 -184627154 + L2 LINE L2 1854 2093 -1221 592 171 17 25 chr3 42897809 42898050 -184626528 + (TA)n Simple_repeat Simple_repeat 1 239 0 181 245 94 0 chr3 42898053 42898106 -184626472 + L2 LINE L2 3255 3312 -1 269 313 76 30 chr3 42898186 42898317 -184626261 - L2 LINE L2 -3 3269 3133 26 0 0 0 chr3 42899740 42899766 -184624812 + AT_rich Low_complexity Low_complexity 1 26 0 316 59 39 0 chr3 42900089 42900140 -184624438 + (TC)n Simple_repeat Simple_repeat 1 53 0 368 281 100 56 chr3 42900151 42900382 -184624196 - L1ME3A LINE L1 -11 6159 5919 359 278 201 48 chr3 42900488 42900976 -184623602 - L2 LINE L2 -37 3276 2710 2223 84 3 7 chr3 42900976 42901275 -184623303 - AluY SINE Alu -13 298 1 359 278 201 48 chr3 42901275 42901326 -184623252 - L2 LINE L2 -603 2710 2668 273 338 50 7 chr3 42902069 42902208 -184622370 + MIR SINE MIR 47 191 -71 716 146 76 21 chr3 42902975 42903119 -184621459 - MER61B LTR ERV1 0 425 274 287 188 0 0 chr3 42903118 42903166 -184621412 - MER61A LTR ERV1 -295 48 1 * 13702 96 24 50 chr3 42903166 42905324 -184619254 - MER61A-int LTR ERV1 0 5217 3116 323 303 58 13 chr3 42905326 42905481 -184619097 + MIR SINE MIR 39 200 -62 515 130 24 57 chr3 42905482 42905605 -184618973 + L1MA8 LINE L1 6173 6291 0 29 0 0 0 chr3 42905670 42905699 -184618879 + AT_rich Low_complexity Low_complexity 1 29 0 263 368 49 12 chr3 42905780 42905943 -184618635 + MIR3 SINE MIR 40 208 0 203 371 9 19 chr3 42906089 42906194 -184618384 + MIR3 SINE MIR 87 190 -18 536 335 81 70 chr3 42906465 42907021 -184617557 - L2 LINE L2 -705 2609 2048 2282 119 119 8 chr3 42910177 42910562 -184614016 - MSTA LTR MaLR 0 428 1 362 356 23 0 chr3 42911989 42912121 -184612457 - L2 LINE L2 0 3313 3179 201 314 0 0 chr3 42912531 42912582 -184611996 + MIR SINE MIR 201 251 -11 2081 138 0 7 chr3 42912651 42912956 -184611622 - AluSx SINE Alu -9 303 1 812 193 18 0 chr3 42914226 42914392 -184610186 + FRAM SINE Alu 8 176 0 5127 186 32 44 chr3 42914957 42915994 -184608584 - L1MC1 LINE L1 -7 6606 5557 270 173 77 0 chr3 42915994 42916046 -184608532 + MADE1 DNA Mariner 1 56 -24 5127 186 32 44 chr3 42916046 42916298 -184608280 - L1MC1 LINE L1 -1056 5557 5303 8096 165 84 56 chr3 42916299 42916345 -184608233 - L1MC1 LINE L1 -4444 1982 1939 2212 114 3 10 chr3 42916345 42916651 -184607927 + AluSx SINE Alu 1 304 -8 8096 165 84 56 chr3 42916651 42918516 -184606062 - L1MC1 LINE L1 -4487 1939 17 1217 241 40 64 chr3 42919939 42920473 -184604105 - L1M4c LINE L1 -4459 1924 1188 424 345 75 31 chr3 42921285 42921607 -184602971 + LTR16C LTR ERVL 156 491 0 32 26 0 0 chr3 42922644 42922683 -184601895 + AT_rich Low_complexity Low_complexity 1 39 0 841 239 19 46 chr3 42922751 42923010 -184601568 - L1ME3 LINE L1 -1 6161 5910 246 301 16 8 chr3 42923257 42923380 -184601198 + L1MEd LINE L1 27 150 -5969 276 85 65 35 chr3 42923392 42923457 -184601121 + AluSg/x SINE Alu 120 178 -124 5272 180 9 39 chr3 42923457 42925569 -184599009 + L1P3 LINE L1 344 2449 -4012 6269 90 8 1 chr3 42925571 42926727 -184597851 + L1PA8A LINE L1 4976 6129 -2 578 318 71 21 chr3 42926787 42927067 -184597511 + L1MEd LINE L1 396 689 -5430 186 71 0 0 chr3 42927107 42927135 -184597443 + (TA)n Simple_repeat Simple_repeat 1 28 0 260 292 35 74 chr3 42927372 42927629 -184596949 + L1MEd LINE L1 1011 1257 -4862 32 0 0 0 chr3 42927669 42927701 -184596877 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr3 42928189 42928228 -184596350 + AT_rich Low_complexity Low_complexity 1 39 0 1617 279 88 8 chr3 42928272 42928774 -184595804 - MLT1E LTR MaLR -51 542 1 23 33 0 0 chr3 42928774 42928804 -184595774 + AT_rich Low_complexity Low_complexity 1 30 0 206 152 0 22 chr3 42928831 42928877 -184595701 + T-rich Low_complexity Low_complexity 5 49 0 303 319 111 84 chr3 42930403 42930855 -184593723 + L2 LINE L2 2838 3301 -12 216 0 0 0 chr3 42931409 42931433 -184593145 + (T)n Simple_repeat Simple_repeat 1 24 0 1782 188 3 6 chr3 42932107 42932464 -184592114 - L1MA6 LINE L1 -4 6296 5941 312 325 110 32 chr3 42933005 42933251 -184591327 + L1M4 LINE L1 4301 4565 -1581 198 118 0 0 chr3 42933343 42933377 -184591201 + (TG)n Simple_repeat Simple_repeat 1 34 0 63 26 0 0 chr3 42933945 42934022 -184590556 + AT_rich Low_complexity Low_complexity 1 77 0 28 0 0 0 chr3 42934208 42934236 -184590342 + AT_rich Low_complexity Low_complexity 1 28 0 323 260 182 26 chr3 42934290 42934529 -184590049 + L1MC4 LINE L1 7652 7913 -48 7440 32 3 0 chr3 42934642 42935698 -184588880 - L1PA4 LINE L1 0 6155 5099 361 343 16 44 chr3 42935702 42935953 -184588625 + L2 LINE L2 1932 2175 -1139 1888 205 93 39 chr3 42936425 42936888 -184587690 - MLT1D LTR MaLR 0 505 18 3762 156 36 3 chr3 42937002 42937677 -184586901 - L1MC1 LINE L1 -1 6332 5636 335 311 42 48 chr3 42937779 42937946 -184586632 + L2 LINE L2 2636 2801 -513 447 320 112 46 chr3 42938049 42938505 -184586073 - LTR33 LTR ERVL -28 493 8 368 280 70 28 chr3 42938913 42939056 -184585522 - L1ME LINE L1 -465 5656 5508 1430 191 34 4 chr3 42941133 42941400 -184583178 - MER1B DNA MER1_type -64 275 1 317 231 10 67 chr3 42941400 42941504 -184583074 + MER117 DNA MER1_type 58 155 -42 248 265 0 19 chr3 42941599 42941670 -184582908 - MIR SINE MIR -119 89 20 230 278 0 0 chr3 42943683 42943771 -184580807 + (TG)n Simple_repeat Simple_repeat 1 88 0 225 312 8 16 chr3 42943684 42943809 -184580769 + (TA)n Simple_repeat Simple_repeat 1 124 0 * 12974 144 56 9 chr3 42943848 42946157 -184578421 - Tigger1 DNA MER2_type 0 2418 1 26 50 0 0 chr3 42946245 42946285 -184578293 + AT_rich Low_complexity Low_complexity 1 40 0 2749 157 79 63 chr3 42946300 42947137 -184577441 + L1MDa LINE L1 1807 2721 -4000 * 8517 186 106 43 chr3 42947135 42949436 -184575142 + L1MC1 LINE L1 20 2465 -3961 5716 208 31 18 chr3 42949580 42951663 -184572915 + L1MC1 LINE L1 4508 6613 0 21 0 0 0 chr3 42951680 42951701 -184572877 + AT_rich Low_complexity Low_complexity 1 21 0 889 263 98 103 chr3 42951812 42953086 -184571492 + HAL1 LINE L1 794 2059 -448 1825 121 3 60 chr3 42953086 42953401 -184571177 + AluSc SINE Alu 2 298 -11 889 263 98 103 chr3 42953401 42953848 -184570730 + HAL1 LINE L1 2059 2507 0 1288 246 65 6 chr3 42955246 42955567 -184569011 + L1M3e LINE L1 1 340 -6690 2395 272 77 40 chr3 42955577 42958746 -184565832 + L1M3e LINE L1 1075 3973 -3133 1749 206 60 5 chr3 42959310 42959712 -184564866 - MLT1C LTR MaLR -6 461 38 182 259 247 12 chr3 42960064 42960145 -184564433 - MIR SINE MIR -78 130 31 2222 216 62 41 chr3 42960420 42961133 -184563445 + L1M3e LINE L1 4810 5537 -1569 1995 189 41 14 chr3 42961378 42961795 -184562783 + MSTC LTR MaLR 1 428 0 1246 271 42 31 chr3 42961808 42962233 -184562345 + MSTC-int LTR MaLR 15 444 -1207 1286 242 92 3 chr3 42962235 42962594 -184561984 + MSTC-int LTR MaLR 1255 1645 -6 1715 204 41 6 chr3 42962603 42962947 -184561631 + MSTC LTR MaLR 5 360 -68 478 306 82 43 chr3 42964175 42964556 -184560022 + LTR16C LTR ERVL 73 444 -13 647 184 0 9 chr3 42965568 42965677 -184558901 + FLAM_A SINE Alu 11 118 -24 496 100 71 0 chr3 42966457 42966767 -184557811 + (TA)n Simple_repeat Simple_repeat 1 332 0 28 0 0 0 chr3 42967494 42967522 -184557056 + AT_rich Low_complexity Low_complexity 1 28 0 2176 92 11 0 chr3 42968892 42969175 -184555403 + AluSx SINE Alu 1 286 -26 253 210 16 0 chr3 42969202 42969264 -184555314 + GA-rich Low_complexity Low_complexity 2 64 0 1405 249 136 21 chr3 42969863 42970349 -184554229 + MLT1F LTR MaLR 1 542 0 594 303 88 54 chr3 42971228 42971545 -184553033 + MLT2F LTR ERVL 159 486 -177 309 75 0 0 chr3 42971640 42971680 -184552898 + MLT2F LTR ERVL 573 612 -51 1169 238 38 16 chr3 42973756 42974201 -184550377 + L1M4c LINE L1 2234 2689 -3693 12914 141 31 21 chr3 42974259 42976600 -184547978 + Tigger1 DNA MER2_type 55 2418 0 2161 248 84 16 chr3 42976607 42977502 -184547076 + L1M4c LINE L1 2703 3658 -2724 1201 193 26 42 chr3 42977504 42977815 -184546763 + L1M4c LINE L1 3801 4106 -2276 290 122 122 0 chr3 42977812 42977861 -184546717 + L1M4 LINE L1 5523 5577 -607 * 4446 200 6 9 chr3 42977860 42978769 -184545809 - L1 LINE L1 -1602 5963 5058 570 253 34 0 chr3 42978779 42978925 -184545653 - L1 LINE L1 -3571 3994 3844 1985 132 0 30 chr3 42978930 42979233 -184545345 - AluSx SINE Alu -18 294 1 2045 271 57 44 chr3 42979235 42979275 -184545303 - L1 LINE L1 -3857 3708 3670 2171 105 14 0 chr3 42979275 42979571 -184545007 + AluSg SINE Alu 1 300 -10 2045 271 57 44 chr3 42979571 42981178 -184543400 - L1 LINE L1 -3895 3670 2179 * 8551 197 52 6 chr3 42981176 42982794 -184541784 + L1MA2 LINE L1 472 2163 -5402 * 10263 187 13 10 chr3 42982792 42984865 -184539713 + L1MA2 LINE L1 4027 6106 -1459 7426 124 4 1 chr3 42984885 42986181 -184538397 + L1MA2 LINE L1 6424 7723 0 1718 289 31 20 chr3 42986213 42986760 -184537818 - L1 LINE L1 -5720 1776 1224 2791 232 57 52 chr3 42986812 42987793 -184536785 - L1M4 LINE L1 -946 5200 4215 195 366 27 18 chr3 42987820 42987932 -184536646 - L2 LINE L2 -2072 1242 1130 257 0 30 0 chr3 42988777 42988810 -184535768 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 305 296 318 0 chr3 42989113 42989289 -184535289 - MIR SINE MIR -1 261 30 1142 94 6 11 chr3 42989485 42989665 -184534913 - L1PA8 LINE L1 0 6172 5994 5734 68 9 0 chr3 42989665 42990655 -184533923 + L1PA8 LINE L1 4992 5989 -183 428 328 78 10 chr3 42991263 42991455 -184533123 + MIR SINE MIR 1 205 -57 552 263 64 95 chr3 42991843 42992295 -184532283 - L1ME3A LINE L1 -1 6169 5732 701 291 94 40 chr3 42992296 42992870 -184531708 + L1M4 LINE L1 2853 3457 -2689 23 54 0 0 chr3 42993536 42993573 -184531005 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr3 42994237 42994257 -184530321 + (GAA)n Simple_repeat Simple_repeat 2 21 0 557 267 17 40 chr3 42995035 42995211 -184529367 - MLT1H1 LTR MaLR -24 531 360 198 103 0 0 chr3 42995232 42995261 -184529317 + (TC)n Simple_repeat Simple_repeat 2 30 0 713 265 69 87 chr3 42995723 42995837 -184528741 + HAL1 LINE L1 988 1103 -1404 6834 35 2 7 chr3 42995837 42996672 -184527906 + L1PA5 LINE L1 5323 6153 -1 713 265 69 87 chr3 42996672 42996994 -184527584 + HAL1 LINE L1 1103 1416 -1091 343 262 7 55 chr3 42997026 42997171 -184527407 + HAL1 LINE L1 1509 1646 -861 213 283 0 0 chr3 42998331 42998384 -184526194 + (TG)n Simple_repeat Simple_repeat 1 53 0 1259 281 99 22 chr3 42998677 42999182 -184525396 - MLT1H LTR MaLR 0 549 6 302 306 0 9 chr3 42999423 42999531 -184525047 - MIR SINE MIR -57 205 99 210 343 0 0 chr3 43000395 43000462 -184524116 - L2 LINE L2 -219 3053 2987 292 250 16 0 chr3 43001056 43001120 -184523458 - MIR SINE MIR -62 146 82 286 309 154 0 chr3 43001956 43002079 -184522499 - MIR3 SINE MIR -22 186 45 180 0 0 0 chr3 43002468 43002488 -184522090 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1684 58 0 98 chr3 43002539 43002813 -184521765 - L1PA8 LINE L1 -2 6170 5924 229 219 0 78 chr3 43003211 43003275 -184521303 + MIR SINE MIR 110 168 -94 653 274 159 77 chr3 43003386 43003827 -184520751 - MLT1H LTR MaLR 0 549 73 279 0 0 0 chr3 43005100 43005131 -184519447 + (TG)n Simple_repeat Simple_repeat 2 32 0 285 269 19 19 chr3 43005232 43005336 -184519242 + MIR SINE MIR 158 261 -1 288 278 14 0 chr3 43005558 43005630 -184518948 + MIR SINE MIR 180 252 -10 763 163 126 42 chr3 43005820 43006010 -184518568 + L1PB3 LINE L1 5946 6151 -3 783 286 66 66 chr3 43006136 43006514 -184518064 + LTR16A LTR ERVL 64 441 -9 2136 107 0 3 chr3 43006805 43007095 -184517483 - AluSx SINE Alu -19 293 5 26 30 0 0 chr3 43007354 43007387 -184517191 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr3 43007661 43007689 -184516889 + AT_rich Low_complexity Low_complexity 1 28 0 197 132 26 0 chr3 43007914 43007952 -184516626 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 359 273 131 33 chr3 43007954 43008343 -184516235 - L1M4 LINE L1 -3127 3019 2593 340 328 60 22 chr3 43008551 43008734 -184515844 - MER117 DNA MER1_type -6 191 2 591 259 170 25 chr3 43008770 43009052 -184515526 + HAL1b LINE L1 451 773 -575 320 308 0 25 chr3 43009678 43009798 -184514780 + HAL1b LINE L1 839 955 -393 224 268 207 0 chr3 43010223 43010305 -184514273 - L2 LINE L2 -18 3295 3197 38 22 0 0 chr3 43010822 43010867 -184513711 + AT_rich Low_complexity Low_complexity 1 45 0 6207 51 0 0 chr3 43011715 43012500 -184512078 - L1PA4 LINE L1 -4141 2005 1221 27178 38 1 1 chr3 43012500 43016636 -184507942 + L1PA4 LINE L1 2021 6155 0 248 260 83 10 chr3 43016747 43016843 -184507735 + MST-int LTR MaLR 1327 1429 -222 1928 138 0 34 chr3 43017027 43017347 -184507231 + AluSc SINE Alu 1 309 0 745 232 89 12 chr3 43017465 43017711 -184506867 - Zaphod DNA AcHobo -172 3859 3595 * 1610 260 118 48 chr3 43017708 43018029 -184506549 - Zaphod DNA AcHobo -3040 991 694 767 167 58 0 chr3 43018029 43018203 -184506375 + MER53 DNA DNA 4 187 -2 1610 260 118 48 chr3 43018203 43018793 -184505785 - Zaphod DNA AcHobo -3337 694 16 321 227 11 23 chr3 43018860 43018948 -184505630 + MLT1J2 LTR MaLR 72 158 -292 22 35 0 0 chr3 43019293 43019322 -184505256 + AT_rich Low_complexity Low_complexity 1 29 0 1438 272 70 33 chr3 43019460 43019916 -184504662 - MLT1D LTR MaLR -6 499 27 245 197 26 53 chr3 43020423 43020499 -184504079 - L1ME LINE L1 -364 5757 5684 461 254 44 44 chr3 43020573 43020821 -184503757 + L1MEc LINE L1 1956 2203 -4193 1076 171 0 5 chr3 43020990 43021177 -184503401 + L1PA13 LINE L1 4788 4973 -1173 2014 173 52 32 chr3 43021179 43021709 -184502869 + MLT2A2 LTR ERVL 1 550 -4 5214 117 61 3 chr3 43021709 43021767 -184502811 + L1PA13 LINE L1 4968 5021 -1142 2246 79 0 26 chr3 43021767 43022072 -184502506 + AluY SINE Alu 1 297 -14 5214 117 61 3 chr3 43022072 43023164 -184501414 + L1PA13 LINE L1 5021 6161 -2 1113 243 66 6 chr3 43023167 43023517 -184501061 + L1MEc LINE L1 2465 2835 -3380 21 0 0 0 chr3 43024337 43024358 -184500220 + AT_rich Low_complexity Low_complexity 1 21 0 5521 134 33 3 chr3 43024360 43025369 -184499209 - L1PA15 LINE L1 -2 6163 5124 302 303 96 23 chr3 43025504 43025694 -184498884 + L1ME2 LINE L1 5708 5910 -256 1636 213 20 17 chr3 43026300 43026652 -184497926 - MLT1A1 LTR MaLR 0 365 13 276 30 0 0 chr3 43027265 43027298 -184497280 + (CA)n Simple_repeat Simple_repeat 1 33 0 2540 147 33 9 chr3 43027298 43027748 -184496830 - L1PB3 LINE L1 -9 6145 5685 2488 62 3 3 chr3 43027867 43028176 -184496402 - AluY SINE Alu 0 311 3 33 43 0 0 chr3 43029083 43029130 -184495448 + AT_rich Low_complexity Low_complexity 1 47 0 1593 275 59 32 chr3 43029946 43030695 -184493883 + L1ME LINE L1 140 908 -5162 202 137 55 14 chr3 43030838 43030911 -184493667 + (TA)n Simple_repeat Simple_repeat 2 77 0 298 192 64 29 chr3 43030951 43031123 -184493455 + (TA)n Simple_repeat Simple_repeat 1 178 0 338 178 66 26 chr3 43031218 43031370 -184493208 + (TA)n Simple_repeat Simple_repeat 2 159 0 1249 205 13 8 chr3 43031546 43031780 -184492798 + AluJb SINE Alu 1 235 -77 240 180 166 65 chr3 43032618 43032757 -184491821 + L1ME LINE L1 877 1029 -5041 375 106 0 0 chr3 43032940 43033006 -184491572 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 225 0 0 0 chr3 43033023 43033048 -184491530 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1816 117 36 0 chr3 43033048 43033295 -184491283 - AluSx SINE Alu -53 259 4 639 279 102 95 chr3 43033403 43033453 -184491125 + L1ME LINE L1 2224 2272 -3808 2026 149 21 6 chr3 43033453 43033782 -184490796 + MER1B DNA MER1_type 4 337 0 639 279 102 95 chr3 43033782 43034505 -184490073 + L1ME LINE L1 2272 3006 -3074 430 209 157 52 chr3 43034505 43034620 -184489958 + FLAM_A SINE Alu 1 127 -6 639 279 102 95 chr3 43034620 43034732 -184489846 + L1ME LINE L1 3006 3116 -2964 263 299 50 40 chr3 43034870 43035171 -184489407 + L1M4 LINE L1 4477 4780 -1366 290 255 104 28 chr3 43035223 43035329 -184489249 - MIR3 SINE MIR -82 126 13 621 288 38 95 chr3 43035371 43035780 -184488798 - MLT1I LTR MaLR -2 407 25 378 0 0 0 chr3 43037093 43037135 -184487443 + (CA)n Simple_repeat Simple_repeat 2 43 0 314 251 123 112 chr3 43041320 43041687 -184482891 - L1M2 LINE L1 -5752 1097 727 215 273 0 0 chr3 43042001 43042056 -184482522 + (CGGA)n Simple_repeat Simple_repeat 1 55 0 199 155 14 28 chr3 43042270 43042341 -184482237 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr3 43047101 43047122 -184477456 + AT_rich Low_complexity Low_complexity 1 21 0 202 244 61 37 chr3 43049736 43049818 -184474760 + MIR SINE MIR 48 131 -131 423 271 65 0 chr3 43049842 43049949 -184474629 + MIR SINE MIR 59 172 -90 208 289 19 0 chr3 43051143 43051195 -184473383 + L2 LINE L2 3215 3267 -5 228 307 27 13 chr3 43053396 43053471 -184471107 + MIR3 SINE MIR 130 205 -3 342 236 163 24 chr3 43053608 43053731 -184470847 + MIR SINE MIR 8 147 -115 26 30 0 0 chr3 43056949 43056982 -184467596 + AT_rich Low_complexity Low_complexity 1 33 0 180 200 0 0 chr3 43057280 43057330 -184467248 + (TA)n Simple_repeat Simple_repeat 2 51 0 659 210 138 6 chr3 43057846 43058013 -184466565 - MER5A DNA MER1_type 0 189 1 26 30 0 0 chr3 43058140 43058173 -184466405 + AT_rich Low_complexity Low_complexity 1 33 0 1564 261 76 0 chr3 43058388 43058833 -184465745 + L1MD2 LINE L1 5655 6133 -226 181 277 161 66 chr3 43059257 43059394 -184465184 - L3 LINE CR1 -48 1529 1380 766 283 72 9 chr3 43059530 43059753 -184464825 - MIR SINE MIR -2 260 24 263 191 15 15 chr3 43061221 43061289 -184463289 + MER112 DNA MER1_type 13 80 -180 28 61 0 0 chr3 43061388 43061437 -184463141 + AT_rich Low_complexity Low_complexity 1 49 0 277 356 40 0 chr3 43061512 43061613 -184462965 - L2 LINE L2 -15 3257 3153 387 276 64 26 chr3 43063801 43063957 -184460621 + MIR SINE MIR 68 229 -33 1039 253 34 48 chr3 43064459 43064811 -184459767 - LTR16A LTR ERVL 0 450 104 1419 175 168 34 chr3 43064817 43065196 -184459382 + L1MA4A LINE L1 5855 6279 -24 1839 119 62 12 chr3 43066218 43066538 -184458040 - L1MA6 LINE L1 0 6300 5965 208 297 109 20 chr3 43069075 43069176 -184455402 + MIR SINE MIR 33 142 -120 1319 62 5 5 chr3 43069897 43070107 -184454471 + (GAA)n Simple_repeat Simple_repeat 1 210 0 28 0 0 0 chr3 43070275 43070303 -184454275 + AT_rich Low_complexity Low_complexity 1 28 0 330 87 0 0 chr3 43071175 43071221 -184453357 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 434 244 102 31 chr3 43074621 43074748 -184449830 - L2 LINE L2 0 3313 3178 372 22 0 0 chr3 43077846 43077891 -184446687 + (ATG)n Simple_repeat Simple_repeat 2 46 0 200 259 37 0 chr3 43078156 43078210 -184446368 + L2 LINE L2 3257 3312 -1 234 62 0 0 chr3 43079327 43079359 -184445219 + (CA)n Simple_repeat Simple_repeat 2 33 0 305 184 10 31 chr3 43082755 43082853 -184441725 + CT-rich Low_complexity Low_complexity 5 100 0 192 77 0 0 chr3 43084806 43084832 -184439746 + (TC)n Simple_repeat Simple_repeat 1 26 0 213 94 0 0 chr3 43084858 43084890 -184439688 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr3 43085301 43085323 -184439255 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr3 43085734 43085769 -184438809 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr3 43086490 43086522 -184438056 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 43087902 43087923 -184436655 + AT_rich Low_complexity Low_complexity 1 21 0 43 20 0 0 chr3 43089074 43089124 -184435454 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr3 43090635 43090655 -184433923 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 214 114 23 23 chr3 43091947 43091991 -184432587 + (AAATG)n Simple_repeat Simple_repeat 1 44 0 468 286 60 30 chr3 43093484 43093652 -184430926 + MIR3 SINE MIR 15 187 -21 267 322 132 26 chr3 43094095 43094247 -184430331 + MIR3 SINE MIR 16 183 -25 435 205 195 70 chr3 43094784 43094969 -184429609 - MER3 DNA MER1_type 0 209 2 200 271 52 21 chr3 43096510 43096606 -184427972 - MIR SINE MIR -62 200 102 320 111 49 0 chr3 43096942 43097023 -184427555 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 56 0 0 chr3 43097026 43097062 -184427516 + AT_rich Low_complexity Low_complexity 1 36 0 339 324 92 42 chr3 43097822 43098060 -184426518 - MIR SINE MIR -11 251 2 202 267 0 17 chr3 43101138 43101198 -184423380 + (TG)n Simple_repeat Simple_repeat 2 60 0 371 242 76 86 chr3 43102120 43102318 -184422260 - MIR SINE MIR -8 254 59 250 73 0 0 chr3 43102886 43102927 -184421651 - L1PA6 LINE L1 0 6154 6114 * 1120 93 0 0 chr3 43102918 43103069 -184421509 + L1PA6 LINE L1 5981 6131 -23 336 287 28 46 chr3 43106827 43106935 -184417643 - L2 LINE L2 -18 3295 3190 198 71 0 0 chr3 43112566 43112594 -184411984 + (TC)n Simple_repeat Simple_repeat 1 28 0 405 0 0 0 chr3 43112596 43112641 -184411937 + (CA)n Simple_repeat Simple_repeat 2 46 0 2061 213 45 62 chr3 43113540 43114075 -184410503 - MLT1F LTR MaLR 0 542 17 513 110 0 0 chr3 43114563 43114654 -184409924 + (TG)n Simple_repeat Simple_repeat 1 91 0 24 67 0 0 chr3 43115273 43115318 -184409260 + AT_rich Low_complexity Low_complexity 1 45 0 1735 161 21 0 chr3 43115453 43115739 -184408839 - AluJb SINE Alu -12 300 9 208 311 0 33 chr3 43117588 43117678 -184406900 + (TA)n Simple_repeat Simple_repeat 2 88 0 238 211 0 19 chr3 43119094 43119146 -184405432 + CT-rich Low_complexity Low_complexity 4 54 0 213 288 15 30 chr3 43119952 43120018 -184404560 + L2 LINE L2 3184 3248 -65 348 219 17 76 chr3 43124042 43124161 -184400417 + MIR SINE MIR 67 178 -84 651 315 0 6 chr3 43124393 43124574 -184400004 + MIR SINE MIR 83 262 0 941 191 16 6 chr3 43126487 43126670 -184397908 - MER5A DNA MER1_type -4 185 1 1829 239 58 8 chr3 43127003 43127488 -184397090 - MER67D LTR ERV1 0 514 6 388 301 49 8 chr3 43127502 43127625 -184396953 - MIR3 SINE MIR -45 163 36 218 231 0 55 chr3 43127703 43127794 -184396784 + T-rich Low_complexity Low_complexity 2 87 0 360 325 197 0 chr3 43128012 43128215 -184396363 + MIR SINE MIR 16 258 -4 364 279 90 58 chr3 43129303 43129481 -184395097 + MIR SINE MIR 2 188 -20 333 0 0 0 chr3 43130206 43130243 -184394335 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2364 83 7 3 chr3 43130269 43130571 -184394007 - AluSg SINE Alu -7 303 1 915 224 9 36 chr3 43132366 43132585 -184391993 + MER20 DNA MER1_type 7 219 0 199 214 29 19 chr3 43133628 43133731 -184390847 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 198 208 0 0 chr3 43136125 43136173 -184388405 + (TG)n Simple_repeat Simple_repeat 1 48 0 251 328 33 8 chr3 43136891 43137013 -184387565 - L1ME3 LINE L1 -35 6127 6003 309 252 13 113 chr3 43137107 43137173 -184387405 - HAL1 LINE L1 -1556 951 907 1750 169 28 3 chr3 43137173 43137463 -184387115 - AluJo SINE Alu -12 300 4 309 252 13 113 chr3 43137463 43137547 -184387031 - HAL1 LINE L1 -1600 907 816 185 351 0 0 chr3 43138050 43138107 -184386471 + MIR SINE MIR 61 117 -91 * 438 343 74 9 chr3 43138104 43138320 -184386258 + MIR SINE MIR 7 236 -26 236 240 27 27 chr3 43138420 43138495 -184386083 + MIR SINE MIR 117 191 -71 21 0 0 0 chr3 43141228 43141249 -184383329 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr3 43142841 43142864 -184381714 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1504 223 0 14 chr3 43142869 43143161 -184381417 + AluJb SINE Alu 1 288 -24 332 218 113 57 chr3 43145375 43145499 -184379079 - MLT1H LTR MaLR -60 535 405 584 282 101 18 chr3 43145529 43145806 -184378772 - MLT1H LTR MaLR -249 300 1 2207 96 0 32 chr3 43149122 43149435 -184375143 + AluSx SINE Alu 1 303 -9 268 208 0 15 chr3 43149686 43149753 -184374825 + AluSc SINE Alu 131 175 -124 728 178 16 0 chr3 43149864 43149993 -184374585 + AluJb SINE Alu 182 308 -302 929 93 11 33 chr3 43149993 43150065 -184374513 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 929 93 11 33 chr3 43150065 43150248 -184374330 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 728 178 16 0 chr3 43150248 43150291 -184374287 + AluJb SINE Alu 308 610 0 288 351 79 12 chr3 43150900 43151065 -184373513 - MIR SINE MIR -74 188 13 3140 238 20 45 chr3 43151566 43152719 -184371859 - L1M4 LINE L1 -2475 3671 2548 384 223 254 0 chr3 43154649 43154779 -184369799 - MER5A DNA MER1_type 0 189 27 306 0 0 0 chr3 43155095 43155129 -184369449 + (TG)n Simple_repeat Simple_repeat 2 35 0 2253 102 0 0 chr3 43155931 43156224 -184368354 + AluSg SINE Alu 6 298 -12 202 338 50 29 chr3 43156241 43156380 -184368198 + MIR SINE MIR 118 259 -3 22 35 0 0 chr3 43158327 43158356 -184366222 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 37 0 chr3 43159624 43159651 -184364927 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1430 172 69 48 chr3 43159993 43160284 -184364294 - AluJo SINE Alu -13 299 3 570 245 75 0 chr3 43160803 43161003 -184363575 + L1M4 LINE L1 4187 4401 -1745 228 232 18 0 chr3 43161783 43161839 -184362739 + (TG)n Simple_repeat Simple_repeat 1 57 0 215 255 0 0 chr3 43162548 43162599 -184361979 + T-rich Low_complexity Low_complexity 1 51 0 285 29 0 0 chr3 43162600 43162634 -184361944 + (TG)n Simple_repeat Simple_repeat 1 34 0 527 270 0 0 chr3 43162635 43162750 -184361828 - MLT1B LTR MaLR -49 341 227 230 216 40 54 chr3 43164779 43164853 -184359725 - L2 LINE L2 0 3313 3241 338 0 24 0 chr3 43165009 43165051 -184359527 + (TC)n Simple_repeat Simple_repeat 1 43 0 207 0 0 0 chr3 43165050 43165073 -184359505 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 874 114 8 8 chr3 43166886 43167017 -184357561 + AluJb SINE Alu 1 131 -181 531 295 143 5 chr3 43168778 43169002 -184355576 + MIR SINE MIR 6 260 -2 189 0 0 0 chr3 43169837 43169858 -184354720 + (TG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 43170452 43170473 -184354105 + AT_rich Low_complexity Low_complexity 1 21 0 540 0 0 0 chr3 43171086 43171146 -184353432 + (TG)n Simple_repeat Simple_repeat 2 61 0 219 146 0 0 chr3 43172033 43172074 -184352504 + (TC)n Simple_repeat Simple_repeat 2 42 0 188 196 0 36 chr3 43172073 43172129 -184352449 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 * 1504 224 87 9 chr3 43172172 43172709 -184351869 + LTR65 LTR ERV1 2 668 -1 203 321 151 0 chr3 43173975 43174081 -184350497 - MIR3 SINE MIR -6 202 81 2209 113 0 0 chr3 43174340 43174633 -184349945 - AluSx SINE Alu -17 295 3 200 309 41 93 chr3 43174662 43174759 -184349819 - L2 LINE L2 -3 3269 3178 392 256 0 115 chr3 43175334 43175490 -184349088 - MIR3 SINE MIR -8 200 63 343 258 74 74 chr3 43176238 43176401 -184348177 - MIR SINE MIR -18 244 82 21 0 0 0 chr3 43176757 43176778 -184347800 + AT_rich Low_complexity Low_complexity 1 21 0 693 159 0 0 chr3 43177144 43177251 -184347327 + FLAM_A SINE Alu 3 109 -33 207 276 0 0 chr3 43178418 43178494 -184346084 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 238 333 0 0 chr3 43178497 43178587 -184345991 + MER94 DNA DNA 5 94 -40 23 33 0 0 chr3 43178689 43178719 -184345859 + AT_rich Low_complexity Low_complexity 1 30 0 293 312 40 27 chr3 43180276 43180442 -184344136 - MIR SINE MIR -34 228 62 466 267 148 49 chr3 43181295 43181640 -184342938 + LTR33 LTR ERVL 76 454 -67 366 357 56 0 chr3 43181703 43181829 -184342749 + MIR SINE MIR 39 171 -91 211 340 0 80 chr3 43182408 43182508 -184342070 + MIR SINE MIR 35 126 -82 187 214 24 0 chr3 43183485 43183527 -184341051 - MIR SINE MIR -111 151 109 754 224 5 41 chr3 43183651 43183847 -184340731 + MER5A DNA MER1_type 1 189 0 523 245 107 36 chr3 43187268 43187464 -184337114 - MER63A DNA MER1_type 0 210 1 279 0 0 0 chr3 43188515 43188546 -184336032 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2230 110 0 20 chr3 43189247 43189548 -184335030 + AluSc SINE Alu 1 295 -14 191 288 17 51 chr3 43190109 43190168 -184334410 - L3 LINE CR1 -12 1565 1509 492 289 138 22 chr3 43190836 43191061 -184333517 + MIR SINE MIR 1 251 -11 21 0 0 0 chr3 43192791 43192812 -184331766 + AT_rich Low_complexity Low_complexity 1 21 0 539 324 80 25 chr3 43196408 43196646 -184327932 - MIR SINE MIR -6 256 6 1622 139 139 67 chr3 43199007 43199352 -184325226 - MSTB1 LTR MaLR 0 432 52 2122 102 0 44 chr3 43199352 43199667 -184324911 - AluSp SINE Alu -12 301 1 1622 139 139 67 chr3 43199667 43199724 -184324854 - MSTB1 LTR MaLR -380 52 1 1791 149 66 30 chr3 43200582 43200944 -184323634 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr3 43201136 43201175 -184323403 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr3 43201897 43201929 -184322649 + AT_rich Low_complexity Low_complexity 1 32 0 4401 181 95 39 chr3 43204155 43205105 -184319473 - MER52A LTR ERV1 0 1755 753 505 231 87 92 chr3 43205104 43205299 -184319279 - MER52A LTR ERV1 -1560 195 2 * 190 378 0 9 chr3 43205483 43205594 -184318984 + L3b LINE CR1 1319 1428 -155 245 240 0 0 chr3 43205918 43205968 -184318610 + (CA)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr3 43206000 43206033 -184318545 + AT_rich Low_complexity Low_complexity 1 33 0 222 286 26 13 chr3 43206261 43206338 -184318240 + MIR SINE MIR 76 153 -109 228 333 81 11 chr3 43206957 43207044 -184317534 + L3b LINE CR1 1476 1568 -15 24 0 0 0 chr3 43207260 43207284 -184317294 + AT_rich Low_complexity Low_complexity 1 24 0 1959 275 67 40 chr3 43208179 43209349 -184315229 + L1ME3A LINE L1 4955 6153 -17 278 281 35 18 chr3 43210029 43210143 -184314435 - MLT1I LTR MaLR 0 409 294 1388 253 48 61 chr3 43210266 43210302 -184314276 - HERV16 LTR ERVL -2605 2391 2356 2004 119 0 60 chr3 43210302 43210620 -184313958 + AluSq SINE Alu 1 299 -14 1388 253 48 61 chr3 43210620 43211104 -184313474 - HERV16 LTR ERVL -2640 2356 1878 1832 213 71 26 chr3 43211104 43211526 -184313052 + MLT2B1 LTR ERVL 1 441 -79 2209 156 0 0 chr3 43211552 43211891 -184312687 + MER7A DNA MER2_type 1 337 -9 241 184 0 0 chr3 43211901 43211950 -184312628 + MLT2B1 LTR ERVL 472 520 0 998 322 31 29 chr3 43211954 43212681 -184311897 - HERV16 LTR ERVL -3213 1783 1059 24 32 0 0 chr3 43213033 43213064 -184311514 + AT_rich Low_complexity Low_complexity 1 31 0 528 283 53 89 chr3 43213178 43213785 -184310793 + L1ME3A LINE L1 3652 4236 -1910 23 33 0 0 chr3 43213804 43213834 -184310744 + AT_rich Low_complexity Low_complexity 1 30 0 293 283 83 20 chr3 43214260 43214640 -184309938 + L1ME3A LINE L1 4944 5354 -805 440 278 97 27 chr3 43215026 43215285 -184309293 + L1ME3A LINE L1 5692 5968 -202 207 0 0 0 chr3 43215865 43215888 -184308690 + (TG)n Simple_repeat Simple_repeat 1 23 0 524 311 109 48 chr3 43216618 43216702 -184307876 + L1ME LINE L1 652 729 -5351 1951 148 7 0 chr3 43216702 43217005 -184307573 + AluSx SINE Alu 1 305 -7 524 311 109 48 chr3 43217005 43217431 -184307147 + L1ME LINE L1 729 1178 -4902 300 27 0 0 chr3 43217433 43217470 -184307108 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1105 276 122 22 chr3 43217511 43217920 -184306658 - MLT1H LTR MaLR -97 452 3 294 151 0 139 chr3 43218612 43218652 -184305926 - MER5A DNA MER1_type -83 106 83 3476 70 18 0 chr3 43218652 43219109 -184305469 - L1PA8 LINE L1 0 6172 5708 294 151 0 139 chr3 43219109 43219154 -184305424 - MER5A DNA MER1_type -106 83 33 878 222 11 0 chr3 43219472 43219648 -184304930 + MER45A DNA AcHobo 1 178 0 435 52 0 0 chr3 43219968 43220026 -184304552 + (TG)n Simple_repeat Simple_repeat 2 59 0 717 149 9 0 chr3 43220026 43220140 -184304438 - AluJb SINE Alu -197 115 1 717 222 54 10 chr3 43221438 43221641 -184302937 - L1MC3 LINE L1 -21 7764 7553 42410 40 22 5 chr3 43221658 43227762 -184296816 - L1PA2 LINE L1 0 6172 1 2045 185 32 46 chr3 43227763 43228260 -184296318 - L1MC3 LINE L1 -202 7583 7094 * 4168 254 27 19 chr3 43228259 43229642 -184294936 - L1M4 LINE L1 -1293 4853 3460 589 214 83 128 chr3 43229650 43230048 -184294530 + MLT1B LTR MaLR 11 390 0 714 242 35 23 chr3 43230077 43230424 -184294154 - L1M4 LINE L1 -2712 3434 3084 737 265 22 13 chr3 43230455 43230685 -184293893 - L1MCb LINE L1 -5810 235 4 3056 59 15 12 chr3 43230784 43231192 -184293386 + L1PA7 LINE L1 5744 6152 -2 281 325 66 58 chr3 43231281 43231739 -184292839 - L2 LINE L2 -122 3191 2728 218 333 12 0 chr3 43232025 43232109 -184292469 + CT-rich Low_complexity Low_complexity 2 86 0 252 314 138 44 chr3 43232233 43232392 -184292186 + L2 LINE L2 2869 3042 -230 202 217 22 0 chr3 43233001 43233047 -184291531 + (TG)n Simple_repeat Simple_repeat 1 47 0 456 19 0 0 chr3 43233151 43233204 -184291374 + (TC)n Simple_repeat Simple_repeat 1 53 0 204 40 0 0 chr3 43233579 43233604 -184290974 + (TAG)n Simple_repeat Simple_repeat 2 26 0 399 307 49 25 chr3 43233615 43233778 -184290800 - MIR SINE MIR -12 250 84 206 73 0 49 chr3 43233882 43233923 -184290655 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 277 45 27 chr3 43234684 43234796 -184289782 + MIR SINE MIR 120 233 -29 280 360 142 20 chr3 43234948 43235201 -184289377 + L2 LINE L2 2988 3271 -1 416 255 51 112 chr3 43235785 43236079 -184288499 - HAL1 LINE L1 -2231 276 1 821 266 36 58 chr3 43236561 43236985 -184287593 - LTR38B LTR ERV1 -26 584 149 195 42 0 0 chr3 43237369 43237393 -184287185 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 426 85 0 0 chr3 43238122 43238181 -184286397 + (TCC)n Simple_repeat Simple_repeat 2 60 0 13781 146 37 6 chr3 43238898 43241220 -184283358 - Tigger1 DNA MER2_type -1 2417 24 270 56 0 0 chr3 43241255 43241291 -184283287 + (TG)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 43241829 43241860 -184282718 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 618 49 0 0 chr3 43241859 43241941 -184282637 + (GA)n Simple_repeat Simple_repeat 1 82 0 190 194 0 0 chr3 43243151 43243187 -184281391 - L2 LINE L2 -94 3219 3184 258 355 77 0 chr3 43243375 43243530 -184281048 - L2 LINE L2 -929 2385 2219 1493 179 97 45 chr3 43243864 43243913 -184280665 + LTR52 LTR ERVL 1 46 -375 339 0 0 0 chr3 43243913 43243955 -184280623 - L1PA3 LINE L1 -3 6152 6111 1493 179 97 45 chr3 43243955 43244285 -184280293 + LTR52 LTR ERVL 46 400 -21 462 326 77 29 chr3 43245622 43245935 -184278643 - L2 LINE L2 -548 2766 2439 246 62 0 0 chr3 43245965 43245997 -184278581 + (GA)n Simple_repeat Simple_repeat 2 33 0 447 321 66 10 chr3 43246024 43246220 -184278358 - MIR SINE MIR 0 262 56 328 286 0 0 chr3 43246797 43246867 -184277711 + MER91A DNA MER1_type 34 103 -93 263 307 50 20 chr3 43246915 43247016 -184277562 + MER91A DNA MER1_type 90 193 -3 576 215 31 110 chr3 43248476 43248667 -184275911 - MER58A DNA MER1_type -4 220 45 4200 194 57 36 chr3 43248852 43249225 -184275353 - L1MD2 LINE L1 -79 6280 5917 1720 200 13 25 chr3 43249225 43249620 -184274958 - MLT1B LTR MaLR 0 390 1 4200 194 57 36 chr3 43249620 43250533 -184274045 - L1MD2 LINE L1 -442 5917 4975 1325 281 65 49 chr3 43250561 43251998 -184272580 - L1ME LINE L1 -4147 2114 479 1980 157 0 0 chr3 43251998 43252292 -184272286 - AluSx SINE Alu -18 294 1 1325 281 65 49 chr3 43252292 43252459 -184272119 - L1ME LINE L1 -5782 479 316 317 354 32 6 chr3 43252527 43252685 -184271893 - L1ME LINE L1 -5668 310 149 286 240 10 31 chr3 43253120 43253216 -184271362 - L1ME LINE L1 -5929 141 48 203 264 23 11 chr3 43253522 43253609 -184270969 + CT-rich Low_complexity Low_complexity 3 90 0 3245 194 32 37 chr3 43254552 43255339 -184269239 + L1MB1 LINE L1 5386 6168 0 1253 272 83 41 chr3 43255349 43256205 -184268373 - L1M4 LINE L1 -3699 2683 1684 4702 109 27 0 chr3 43256205 43256909 -184267669 - L1PA11 LINE L1 0 6174 5452 1253 272 83 41 chr3 43256909 43257229 -184267349 - L1M4 LINE L1 -4698 1684 1379 2488 209 19 13 chr3 43257229 43257751 -184266827 - Tigger1 DNA MER2_type -1892 526 2 1921 231 117 45 chr3 43257751 43258391 -184266187 - L1MDb LINE L1 -4402 2138 1545 185 0 40 0 chr3 43258391 43258416 -184266162 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1921 231 117 45 chr3 43258416 43258943 -184265635 - L1MDb LINE L1 -4995 1545 917 246 105 0 0 chr3 43259087 43259125 -184265453 + (CTG)n Simple_repeat Simple_repeat 1 38 0 695 232 72 65 chr3 43259350 43259613 -184264965 - L1MDb LINE L1 -6260 280 16 978 305 68 65 chr3 43259645 43260779 -184263799 + L2 LINE L2 2186 3313 0 21 0 0 0 chr3 43261367 43261388 -184263190 + AT_rich Low_complexity Low_complexity 1 21 0 251 328 69 23 chr3 43262135 43262266 -184262312 + L2 LINE L2 3174 3310 -3 867 308 86 55 chr3 43263330 43264055 -184260523 + L1ME LINE L1 4623 5369 -777 983 42 0 0 chr3 43264420 43264538 -184260040 + L1PA3 LINE L1 6033 6150 -5 22 56 0 0 chr3 43265216 43265252 -184259326 + AT_rich Low_complexity Low_complexity 1 36 0 450 294 60 35 chr3 43265642 43265843 -184258735 + MIR SINE MIR 47 252 -10 2115 134 3 0 chr3 43266217 43266524 -184258054 - AluSx SINE Alu -4 308 1 2033 106 23 36 chr3 43267492 43268044 -184256534 + MER51A LTR ERV1 1 634 0 2269 108 0 3 chr3 43268540 43268845 -184255733 + AluSg SINE Alu 1 304 -6 1354 198 44 0 chr3 43269041 43269339 -184255239 + L1MB4 LINE L1 5869 6179 -1 2836 152 13 4 chr3 43271408 43271861 -184252717 + LTR32 LTR ERVL 15 471 0 352 226 86 0 chr3 43271861 43271954 -184252624 + L1ME3A LINE L1 6070 6170 0 312 313 39 53 chr3 43271982 43272226 -184252352 + L1ME LINE L1 5440 5641 -480 234 81 0 0 chr3 43272961 43272998 -184251580 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 181 269 75 15 chr3 43273858 43273880 -184250698 - MER5A DNA MER1_type -6 183 164 234 0 0 0 chr3 43273880 43273906 -184250672 + (CAG)n Simple_repeat Simple_repeat 1 26 0 181 269 75 15 chr3 43273906 43273950 -184250628 - MER5A DNA MER1_type -25 164 113 * 272 246 246 0 chr3 43273909 43274019 -184250559 + MER5A DNA MER1_type 47 183 -6 463 296 56 0 chr3 43274134 43274276 -184250302 + MIR SINE MIR 25 174 -88 722 171 33 26 chr3 43274992 43275108 -184249470 - THE1B LTR MaLR 0 364 250 1419 166 35 3 chr3 43275108 43275398 -184249180 + L1MA4A LINE L1 5999 6297 -6 722 171 33 26 chr3 43275398 43275410 -184249168 - THE1B LTR MaLR -114 250 240 1969 110 17 30 chr3 43275410 43275710 -184248868 + AluSq SINE Alu 3 298 -15 722 171 33 26 chr3 43275710 43275732 -184248846 - THE1B LTR MaLR -124 240 212 1230 253 119 74 chr3 43275757 43276624 -184247954 + L1ME3A LINE L1 5264 6169 -1 864 176 18 0 chr3 43276625 43276795 -184247783 + L1MB3 LINE L1 6002 6174 -9 2071 105 14 8 chr3 43277172 43277529 -184247049 - LTR7 LTR ERV1 -2 448 1 2207 114 50 13 chr3 43277529 43277907 -184246671 - HERVH LTR ERV1 0 7713 7322 1304 130 33 9 chr3 43277905 43278120 -184246458 - HERVH LTR ERV1 -1894 5819 5600 * 4342 138 0 1 chr3 43278127 43278784 -184245794 - HERVH LTR ERV1 -2570 5143 4488 3431 98 8 6 chr3 43278786 43279287 -184245291 - HERVH LTR ERV1 -3720 3993 3492 861 149 20 0 chr3 43279277 43279425 -184245153 - HERVH LTR ERV1 -4423 3290 3140 * 14040 92 9 21 chr3 43279419 43282429 -184242149 - HERVH LTR ERV1 -4726 2987 1 2128 88 11 8 chr3 43282431 43282789 -184241789 - LTR7 LTR ERV1 -2 448 1 182 282 10 78 chr3 43284487 43284590 -184239988 + L2 LINE L2 2554 2649 -665 45 55 0 0 chr3 43285332 43285405 -184239173 + AT_rich Low_complexity Low_complexity 1 73 0 2722 179 62 81 chr3 43288794 43289461 -184235117 + LTR8A LTR ERV1 1 654 -73 2159 133 80 0 chr3 43289461 43289798 -184234780 - THE1B LTR MaLR 0 364 1 2722 179 62 81 chr3 43289798 43289871 -184234707 + LTR8A LTR ERV1 654 727 0 598 196 0 0 chr3 43289872 43289974 -184234604 + HUERS-P1 LTR ERV1 2 103 -6160 235 289 70 9 chr3 43290661 43290775 -184233803 + L1M4 LINE L1 2 122 -6420 1183 230 4 4 chr3 43290899 43291138 -184233440 + MLT1A1 LTR MaLR 127 365 0 21 36 0 0 chr3 43291199 43291227 -184233351 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 43291232 43291253 -184233325 + AT_rich Low_complexity Low_complexity 1 21 0 878 224 15 5 chr3 43291271 43291476 -184233102 + MER3 DNA MER1_type 2 208 -1 328 301 54 81 chr3 43291599 43291858 -184232720 + L1ME LINE L1 5411 5662 -459 889 225 58 119 chr3 43291876 43292297 -184232281 + MLT1A1 LTR MaLR 1 365 0 386 250 64 17 chr3 43292358 43292530 -184232048 - L1M4 LINE L1 -943 5203 5024 1240 80 17 28 chr3 43292571 43292747 -184231831 - AluY SINE Alu -18 293 120 344 206 87 56 chr3 43292832 43292958 -184231620 - L1M4 LINE L1 -1200 4946 4817 286 281 180 23 chr3 43293713 43293841 -184230737 + MIR SINE MIR 4 151 -111 898 361 69 20 chr3 43293901 43294643 -184229935 + ERVL LTR ERVL 1375 2152 -3612 833 310 54 46 chr3 43294757 43295059 -184229519 + ERVL LTR ERVL 2311 2620 -3144 1937 145 0 3 chr3 43295059 43295356 -184229222 + AluSx SINE Alu 1 296 -16 833 310 54 46 chr3 43295356 43295550 -184229028 + ERVL LTR ERVL 2620 2811 -2953 2960 159 50 45 chr3 43295571 43296186 -184228392 - LTR29 LTR ERV1 -4 618 1 1140 221 85 45 chr3 43296330 43296660 -184227918 - MER2 DNA MER2_type -1 343 1 1513 241 104 16 chr3 43296693 43297137 -184227441 + L2 LINE L2 1111 1593 -1721 1333 196 54 122 chr3 43297138 43297952 -184226626 + LTR8A LTR ERV1 1 727 0 865 243 176 35 chr3 43298001 43298314 -184226264 + LTR18A LTR ERVL 1 357 0 310 475 212 12 chr3 43298314 43298729 -184225849 + L2 LINE L2 1639 2136 -1178 180 152 0 0 chr3 43299686 43299719 -184224859 + CT-rich Low_complexity Low_complexity 2 34 0 405 264 114 69 chr3 43300442 43300658 -184223920 - MIR SINE MIR -2 260 38 1923 167 20 76 chr3 43300712 43301172 -184223406 + L1MA9 LINE L1 5879 6312 0 904 277 61 79 chr3 43302591 43303085 -184221493 - L2 LINE L2 0 3313 2829 16940 29 1 0 chr3 43303106 43305879 -184218699 - L1PA3 LINE L1 0 6155 3372 257 397 86 44 chr3 43306042 43306427 -184218151 + L2 LINE L2 2872 3272 0 4867 139 76 18 chr3 43307462 43308315 -184216263 - MER4D LTR ERV1 0 903 1 238 193 0 53 chr3 43308367 43308424 -184216154 - MIR SINE MIR -2 260 207 249 229 12 72 chr3 43308968 43309051 -184215527 + L2 LINE L2 3186 3263 -9 3136 127 99 40 chr3 43309249 43309847 -184214731 - MER41B LTR ERV1 -2 633 1 21 0 0 0 chr3 43310190 43310211 -184214367 + AT_rich Low_complexity Low_complexity 1 21 0 1234 203 143 12 chr3 43310912 43311353 -184213225 + LTR55 LTR ERV 1 537 -11 202 341 22 11 chr3 43311517 43311608 -184212970 - MIR SINE MIR -97 165 74 1507 230 6 6 chr3 43311634 43311986 -184212592 - MER57A LTR ERV1 0 403 52 2042 141 38 30 chr3 43312146 43312516 -184212062 - THE1C LTR MaLR 0 375 3 261 284 0 25 chr3 43312569 43312650 -184211928 - LTR67 LTR ERVL 0 557 479 22 70 0 0 chr3 43313168 43313211 -184211367 + AT_rich Low_complexity Low_complexity 1 43 0 2569 201 51 21 chr3 43313847 43314714 -184209864 - L1M4 LINE L1 -386 5798 4906 22 56 0 0 chr3 43314867 43314903 -184209675 + AT_rich Low_complexity Low_complexity 1 36 0 2063 99 0 67 chr3 43315450 43315764 -184208814 + AluY SINE Alu 1 293 -18 4804 251 42 37 chr3 43316249 43318759 -184205819 - L1ME1 LINE L1 -213 5953 3437 * 11074 212 35 25 chr3 43318757 43320563 -184204015 - L1PA16 LINE L1 0 6869 5081 1391 150 0 0 chr3 43320563 43320810 -184203768 - L1MA2 LINE L1 0 6304 6058 11074 212 35 25 chr3 43320810 43321888 -184202690 - L1PA16 LINE L1 -1788 5081 4015 1832 141 29 50 chr3 43321888 43322271 -184202307 + THE1C LTR MaLR 1 375 0 11074 212 35 25 chr3 43322271 43323595 -184200983 - L1PA16 LINE L1 -2854 4015 2134 11245 151 14 116 chr3 43323597 43324208 -184200370 - L1PA16 LINE L1 -4725 2124 1452 2023 138 0 0 chr3 43324208 43324497 -184200081 - AluSx SINE Alu -23 289 1 11245 151 14 116 chr3 43324497 43326243 -184198335 - L1PA16 LINE L1 -5397 1452 8 2127 248 104 21 chr3 43326255 43326801 -184197777 - L1ME1 LINE L1 -2702 3444 2790 1837 139 48 43 chr3 43326801 43327174 -184197404 + THE1C LTR MaLR 1 375 0 2127 248 104 21 chr3 43327174 43327544 -184197034 - L1ME1 LINE L1 -3356 2790 2452 265 255 138 21 chr3 43327691 43327836 -184196742 - L1MA2 LINE L1 -2384 5424 5263 357 290 118 42 chr3 43328122 43328546 -184196032 - L1M4 LINE L1 -1199 4947 4492 5808 119 14 7 chr3 43328597 43329907 -184194671 - L1PA15 LINE L1 -6 6159 4843 319 304 183 13 chr3 43331100 43331267 -184193311 + MIR SINE MIR 11 203 -59 320 277 57 35 chr3 43331761 43331902 -184192676 - MIR SINE MIR -3 259 116 266 336 36 9 chr3 43332297 43332407 -184192171 + MIR3 SINE MIR 94 206 -2 253 297 11 0 chr3 43332512 43332603 -184191975 + (TA)n Simple_repeat Simple_repeat 2 93 0 293 371 30 26 chr3 43333007 43333239 -184191339 - MIR SINE MIR -10 252 20 198 304 230 7 chr3 43333867 43334002 -184190576 - MIR SINE MIR -10 252 88 292 371 30 0 chr3 43335318 43335450 -184189128 + MIR SINE MIR 57 192 -70 26 0 0 0 chr3 43336352 43336378 -184188200 + AT_rich Low_complexity Low_complexity 1 26 0 579 233 125 17 chr3 43336480 43336776 -184187802 - Charlie2 DNA MER1_type -3 2859 2532 365 273 61 0 chr3 43336784 43336883 -184187695 - MIR SINE MIR -131 131 27 367 319 97 32 chr3 43339276 43339461 -184185117 + MIR SINE MIR 48 244 -18 1685 128 77 4 chr3 43339998 43340271 -184184307 - AluSx SINE Alu -19 293 1 2442 152 19 13 chr3 43340291 43340753 -184183825 - L1MA4 LINE L1 -6 6294 5830 1242 153 4 55 chr3 43340753 43340967 -184183611 + L1MA4 LINE L1 5587 5788 -512 2201 112 0 0 chr3 43340967 43341263 -184183315 - AluSx SINE Alu -16 296 1 1242 153 4 55 chr3 43341263 43341302 -184183276 + L1MA4 LINE L1 5788 5827 -473 440 330 54 41 chr3 43341339 43341633 -184182945 - L1ME4a LINE L1 -207 5914 5617 2119 104 27 3 chr3 43342130 43342428 -184182150 - AluSq SINE Alu -8 305 1 297 330 131 55 chr3 43343255 43343637 -184180941 - L2 LINE L2 -19 3294 2884 2473 47 0 31 chr3 43345312 43345630 -184178948 + AluY SINE Alu 1 308 -3 297 346 85 13 chr3 43345939 43346092 -184178486 + MIR SINE MIR 12 175 -87 21 57 0 0 chr3 43346585 43346620 -184177958 + AT_rich Low_complexity Low_complexity 1 35 0 568 306 52 6 chr3 43346887 43347060 -184177518 + MIR SINE MIR 20 200 -62 249 139 0 0 chr3 43347113 43347156 -184177422 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr3 43347162 43347190 -184177388 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 43348984 43349005 -184175573 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr3 43350498 43350531 -184174047 + (TG)n Simple_repeat Simple_repeat 2 34 0 862 218 119 72 chr3 43350531 43350835 -184173743 - LTR16A1 LTR ERVL -3 454 125 906 214 11 11 chr3 43350835 43351022 -184173556 + MER5A DNA MER1_type 2 188 -1 862 218 119 72 chr3 43351022 43351120 -184173458 - LTR16A1 LTR ERVL -332 125 33 1451 181 0 8 chr3 43351138 43351403 -184173175 - L1PA15 LINE L1 0 6165 5903 12566 245 19 30 chr3 43351418 43352402 -184172176 - L1PA13 LINE L1 -1235 5562 4569 2205 148 60 24 chr3 43352402 43352815 -184171763 + MSTA LTR MaLR 1 428 0 12566 245 19 30 chr3 43352815 43356149 -184168429 - L1PA13 LINE L1 -2228 4569 1295 2208 310 18 29 chr3 43356126 43356843 -184167735 - L1PA13 LINE L1 -5982 805 97 * 22 0 0 0 chr3 43357527 43357549 -184167029 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 43358522 43358544 -184166034 + AT_rich Low_complexity Low_complexity 1 22 0 1893 278 121 58 chr3 43359702 43360775 -184163803 - HAL1 LINE L1 -32 2475 1244 3555 30 2 11 chr3 43360775 43361212 -184163366 - L1PA4 LINE L1 0 6155 5723 1893 278 121 58 chr3 43361212 43361916 -184162662 - HAL1 LINE L1 -1263 1244 586 355 317 73 94 chr3 43361917 43362396 -184162182 - HAL1 LINE L1 -1949 558 90 27 0 0 0 chr3 43362975 43363002 -184161576 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 43364246 43364282 -184160296 + AT_rich Low_complexity Low_complexity 1 36 0 402 127 14 0 chr3 43364498 43364569 -184160009 - MSTB LTR MaLR 0 426 355 279 0 0 0 chr3 43367480 43367511 -184157067 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr3 43367590 43367610 -184156968 + (CCCTAA)n Simple_repeat Simple_repeat 5 24 0 249 108 0 0 chr3 43367612 43367649 -184156929 + (TG)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr3 43368902 43368933 -184155645 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 376 20 0 chr3 43371779 43371880 -184152698 - MIR3 SINE MIR -23 185 83 1328 214 7 17 chr3 43373438 43373732 -184150846 - MER58B DNA MER1_type 0 341 51 283 324 97 16 chr3 43374032 43374217 -184150361 + MLT1H LTR MaLR 127 326 -223 291 267 69 10 chr3 43374267 43374368 -184150210 + MLT1H LTR MaLR 399 505 -44 2480 39 0 0 chr3 43375589 43375874 -184148704 + AluY SINE Alu 1 285 -26 1672 177 0 0 chr3 43376049 43376360 -184148218 + AluY SINE Alu 1 311 0 261 302 165 16 chr3 43376570 43376752 -184147826 + HAL1 LINE L1 1209 1417 -1090 1930 146 32 35 chr3 43376752 43377128 -184147450 - THE1C LTR MaLR 0 375 1 10162 122 34 8 chr3 43377134 43378667 -184145911 - THE1C-int LTR MaLR -7 1573 1 1725 162 37 40 chr3 43378667 43379043 -184145535 - THE1C LTR MaLR 0 375 1 248 335 128 5 chr3 43379043 43379246 -184145332 + HAL1 LINE L1 1413 1640 -867 243 219 12 61 chr3 43379503 43379585 -184144993 - L1MC5 LINE L1 -76 7885 7808 26 74 0 0 chr3 43379603 43379657 -184144921 + AT_rich Low_complexity Low_complexity 1 54 0 1313 266 70 19 chr3 43380488 43380901 -184143677 - LTR16A1 LTR ERVL -2 455 22 239 312 123 7 chr3 43381227 43381365 -184143213 + MIR SINE MIR 85 238 -24 2662 254 32 36 chr3 43381600 43382600 -184141978 - L1ME1 LINE L1 -5 6161 5164 250 163 0 20 chr3 43382589 43382638 -184141940 + L1ME4a LINE L1 5969 6016 -105 * 481 188 0 40 chr3 43383143 43383244 -184141334 - MLT1A1 LTR MaLR -265 100 4 184 276 35 46 chr3 43383389 43383476 -184141102 - MIR SINE MIR -83 179 94 1324 212 42 10 chr3 43383641 43383806 -184140772 - AluJo SINE Alu -15 297 118 723 44 0 0 chr3 43383806 43383897 -184140681 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1324 212 42 10 chr3 43383897 43384019 -184140559 - AluJo SINE Alu -194 118 1 2075 90 17 43 chr3 43384175 43384476 -184140102 + AluY SINE Alu 1 293 -18 263 313 24 24 chr3 43384897 43384980 -184139598 - MIR SINE MIR -92 116 34 333 208 13 0 chr3 43385845 43385922 -184138656 + MER116 DNA Mariner 1 78 -2 355 237 169 21 chr3 43386110 43386346 -184138232 - L1ME1 LINE L1 -1534 4612 4342 37835 36 2 1 chr3 43386455 43391536 -184133042 - L1PA3 LINE L1 -322 5833 749 961 250 34 15 chr3 43391539 43391803 -184132775 - L1M2 LINE L1 -6576 273 5 499 182 0 0 chr3 43391803 43391880 -184132698 - Tigger3(Golem) DNA MER2_type -2950 79 3 916 196 34 123 chr3 43391880 43392262 -184132316 + L1MB8 LINE L1 5826 6173 -5 2841 82 0 11 chr3 43392688 43393066 -184131512 + THE1C LTR MaLR 2 375 0 245 270 11 22 chr3 43394464 43394553 -184130025 + L1MC3 LINE L1 4911 4998 -1148 321 360 45 48 chr3 43394656 43395047 -184129531 + L1MEc LINE L1 39 430 -5966 1681 143 35 47 chr3 43395047 43395271 -184129307 - MER44D DNA MER2_type -1882 609 384 537 16 0 0 chr3 43395271 43395333 -184129245 + (CA)n Simple_repeat Simple_repeat 2 63 0 1681 143 35 47 chr3 43395333 43395451 -184129127 - MER44D DNA MER2_type -2107 384 1 321 360 45 48 chr3 43395451 43395925 -184128653 + L1MEc LINE L1 430 901 -5495 * 5287 255 59 12 chr3 43395921 43397208 -184127370 + L1MC3 LINE L1 5477 6824 -961 2634 240 153 14 chr3 43397219 43398045 -184126533 - L1M4c LINE L1 -5415 969 30 239 250 79 0 chr3 43398958 43399034 -184125544 + (AATAG)n Simple_repeat Simple_repeat 2 83 0 23 0 0 0 chr3 43399387 43399410 -184125168 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 43402183 43402204 -184122374 + (CA)n Simple_repeat Simple_repeat 2 22 0 199 143 18 36 chr3 43403341 43403397 -184121181 + A-rich Low_complexity Low_complexity 5 59 0 2302 185 32 28 chr3 43403680 43404079 -184120499 + MLT1C LTR MaLR 1 404 -63 2815 13 0 0 chr3 43404079 43404387 -184120191 - AluY SINE Alu -3 308 1 2302 185 32 28 chr3 43404387 43404452 -184120126 + MLT1C LTR MaLR 404 467 0 314 200 94 12 chr3 43405333 43405418 -184119160 - MIR SINE MIR -1 261 170 236 297 16 70 chr3 43406075 43406203 -184118375 - MIR SINE MIR -70 192 72 24 0 0 0 chr3 43406434 43406458 -184118120 + AT_rich Low_complexity Low_complexity 1 24 0 5031 97 8 14 chr3 43406459 43407191 -184117387 - L1PA10 LINE L1 -2 6166 5439 485 328 116 17 chr3 43407294 43407648 -184116930 - L1M4 LINE L1 -1606 4540 4152 1451 205 0 47 chr3 43407657 43407974 -184116604 - AluJb SINE Alu -10 302 1 251 120 0 40 chr3 43408162 43408212 -184116366 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 643 187 22 30 chr3 43408226 43408360 -184116218 + L1MD3 LINE L1 6726 6858 -1137 289 365 74 5 chr3 43408400 43408589 -184115989 - MIR SINE MIR -15 247 46 213 269 0 77 chr3 43410393 43410471 -184114107 - MIR SINE MIR -73 189 118 466 275 23 15 chr3 43410639 43410770 -184113808 + MIR SINE MIR 110 241 -21 240 237 15 37 chr3 43411005 43411140 -184113438 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 2013 146 9 3 chr3 43411166 43411489 -184113089 - MER7A DNA MER2_type -23 323 1 444 350 48 18 chr3 43411789 43412186 -184112392 - MLT1I LTR MaLR 0 409 1 2263 103 10 0 chr3 43412460 43412762 -184111816 - AluSc SINE Alu -4 305 1 671 35 12 0 chr3 43413374 43413460 -184111118 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 768 170 0 30 chr3 43413752 43413887 -184110691 - AluJb SINE Alu -181 131 1 482 288 52 47 chr3 43414180 43414413 -184110165 - L1ME LINE L1 -443 5727 5494 30 45 0 0 chr3 43414570 43414614 -184109964 + AT_rich Low_complexity Low_complexity 1 44 0 1920 133 21 0 chr3 43414651 43414853 -184109725 - AluSx SINE Alu 0 330 118 194 0 39 0 chr3 43414853 43414879 -184109699 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1920 133 21 0 chr3 43414879 43415000 -184109578 - AluSx SINE Alu -212 118 1 588 290 0 18 chr3 43415004 43415221 -184109357 - L1MC4 LINE L1 -472 7570 7358 232 316 66 0 chr3 43415281 43415357 -184109221 + LTR16A1 LTR ERVL 57 137 -320 1342 264 43 23 chr3 43415734 43416249 -184108329 - L1ME1 LINE L1 -5 6230 5706 228 367 32 6 chr3 43416320 43416478 -184108100 - L1MEc LINE L1 -5925 471 310 378 245 0 49 chr3 43416490 43416592 -184107986 - L1ME1 LINE L1 -2260 3955 3859 324 0 0 0 chr3 43416592 43416628 -184107950 + (TG)n Simple_repeat Simple_repeat 2 37 0 1835 135 4 4 chr3 43416715 43416996 -184107582 - AluSx SINE Alu -13 299 19 8108 216 20 15 chr3 43417058 43418682 -184105896 + L1M1 LINE L1 11 1642 -5923 309 136 0 0 chr3 43418685 43418729 -184105849 + L1M1 LINE L1 1731 1774 -5791 21915 191 22 20 chr3 43418746 43419249 -184105329 - L1PA11 LINE L1 -266 7346 6845 2321 92 0 10 chr3 43419249 43419554 -184105024 - AluY SINE Alu -5 306 5 21915 191 22 20 chr3 43419554 43424552 -184100026 - L1PA11 LINE L1 -767 6845 1008 2275 102 3 0 chr3 43424552 43424846 -184099732 + AluSx SINE Alu 1 295 -17 21915 191 22 20 chr3 43424846 43425849 -184098729 - L1PA11 LINE L1 -6604 1008 8 461 299 43 11 chr3 43426097 43426281 -184098297 - L1ME1 LINE L1 -5988 408 219 247 252 43 43 chr3 43427152 43427267 -184097311 + MLT1H1 LTR MaLR 439 553 -2 321 278 30 53 chr3 43427304 43427437 -184097141 + MIR SINE MIR 123 252 -10 804 262 22 71 chr3 43428531 43429031 -184095547 + MLT2C1 LTR ERVL 1 458 -6 218 368 21 21 chr3 43429032 43429127 -184095451 + L2 LINE L2 1058 1152 -2162 180 0 0 0 chr3 43430271 43430291 -184094287 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4732 170 23 48 chr3 43430291 43431876 -184092702 + L1MA4 LINE L1 4705 6251 -49 240 264 0 0 chr3 43431878 43431931 -184092647 + L1M1 LINE L1 11 63 -7502 2557 155 14 9 chr3 43431931 43432357 -184092221 - MSTA LTR MaLR 0 428 1 1509 170 30 27 chr3 43432357 43432657 -184091921 - MSTA-int LTR MaLR 0 1651 1351 2648 203 37 4 chr3 43432658 43433141 -184091437 - MSTA-int LTR MaLR -764 887 389 * 5613 185 33 46 chr3 43433139 43434053 -184090525 + L1MA3 LINE L1 4088 5013 -1292 1379 187 53 14 chr3 43434053 43434336 -184090242 + AluJb SINE Alu 3 296 -16 5613 185 33 46 chr3 43434336 43435406 -184089172 + L1MA3 LINE L1 5013 6052 -253 226 136 9 91 chr3 43435435 43435545 -184089033 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 1162 100 33 0 chr3 43435546 43435726 -184088852 + L1MA3 LINE L1 6120 6305 0 225 183 0 17 chr3 43435729 43435789 -184088789 + L1MA6 LINE L1 6242 6300 0 824 300 50 27 chr3 43436013 43436588 -184087990 + MLT2E LTR ERVL 3 628 0 518 334 29 32 chr3 43436847 43437158 -184087420 + ERVL-E LTR ERVL 316 625 -5139 624 337 4 4 chr3 43437325 43437592 -184086986 + ERVL-E LTR ERVL 911 1177 -4587 1141 316 0 53 chr3 43437611 43438004 -184086574 - LTR16B LTR ERVL -92 372 1 536 288 21 25 chr3 43438211 43438451 -184086127 + L1M4 LINE L1 2680 2918 -3228 392 325 48 43 chr3 43438656 43438844 -184085734 + MIR SINE MIR 7 195 -67 1046 168 9 44 chr3 43439528 43439754 -184084824 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr3 43440000 43440021 -184084557 + (TG)n Simple_repeat Simple_repeat 2 22 0 319 246 37 15 chr3 43440642 43440776 -184083802 - L1M4 LINE L1 -3642 2504 2368 25 0 0 0 chr3 43440861 43440886 -184083692 + AT_rich Low_complexity Low_complexity 1 25 0 6367 183 47 23 chr3 43440892 43443144 -184081434 - L1MA9 LINE L1 -38 6274 3959 3643 171 17 4 chr3 43443155 43443850 -184080728 - L1MA5 LINE L1 -2 6298 5595 465 232 79 17 chr3 43443862 43444039 -184080539 - L1MD3 LINE L1 -110 7885 7698 2016 133 15 6 chr3 43445243 43445574 -184079004 + L1MA4 LINE L1 5909 6242 -58 343 350 25 12 chr3 43445788 43445948 -184078630 - MIR SINE MIR -42 220 59 243 0 0 0 chr3 43446511 43446538 -184078040 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4901 122 4 49 chr3 43446681 43447419 -184077159 - L1PA4 LINE L1 -6 6149 5445 1636 210 64 35 chr3 43447454 43447907 -184076671 + MER31B LTR ERV1 1 466 0 569 96 0 0 chr3 43448063 43448136 -184076442 + Tigger3(Golem) DNA MER2_type 36 108 -2921 * 3825 126 89 13 chr3 43448128 43448826 -184075752 + Tigger3(Golem) DNA MER2_type 2279 3029 0 22 0 0 0 chr3 43449066 43449088 -184075490 + AT_rich Low_complexity Low_complexity 1 22 0 183 300 0 50 chr3 43450108 43450168 -184074410 - MIR SINE MIR -4 258 202 561 291 86 15 chr3 43450244 43450600 -184073978 + LTR33 LTR ERVL 104 512 -9 320 322 62 28 chr3 43450818 43450882 -184073696 - MIR SINE MIR -73 189 129 1446 243 67 30 chr3 43450882 43451418 -184073160 - LTR38 LTR ERV1 0 556 1 320 322 62 28 chr3 43451418 43451530 -184073048 - MIR SINE MIR -133 129 7 2298 74 0 0 chr3 43452009 43452321 -184072257 + AluY SINE Alu 1 312 0 1324 286 56 34 chr3 43452373 43453073 -184071505 - L1ME3 LINE L1 -216 6015 5293 23 0 0 0 chr3 43453347 43453370 -184071208 + AT_rich Low_complexity Low_complexity 1 23 0 3709 156 80 6 chr3 43453443 43454105 -184070473 - MER50 LTR ERV1 -23 711 1 343 309 53 0 chr3 43454277 43454429 -184070149 - L1ME3 LINE L1 -4723 1673 1514 2575 213 42 101 chr3 43454493 43454933 -184069645 - MER21B LTR ERV1 -109 754 380 1409 185 83 0 chr3 43454933 43455209 -184069369 - AluJo SINE Alu -10 302 4 2575 213 42 101 chr3 43455209 43455557 -184069021 - MER21B LTR ERV1 -483 380 13 25 0 0 0 chr3 43455681 43455706 -184068872 + AT_rich Low_complexity Low_complexity 1 25 0 699 226 0 0 chr3 43455764 43455910 -184068668 + L1MD3 LINE L1 7830 7975 -20 203 133 0 0 chr3 43456842 43456872 -184067706 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 43457337 43457359 -184067219 + AT_rich Low_complexity Low_complexity 1 22 0 1411 225 128 47 chr3 43457773 43458498 -184066080 - L1MC5 LINE L1 -304 7657 6874 23 68 0 0 chr3 43458517 43458561 -184066017 + AT_rich Low_complexity Low_complexity 1 44 0 4729 136 44 7 chr3 43458561 43459399 -184065179 - L1MA6 LINE L1 -6 6294 5426 6577 220 24 76 chr3 43459401 43460332 -184064246 - L1M4c LINE L1 -1224 5158 4181 4911 163 26 13 chr3 43460332 43461241 -184063337 + MER49 LTR ERV1 3 923 0 6577 220 24 76 chr3 43461241 43461633 -184062945 - L1M4c LINE L1 -2201 4181 3770 2359 152 24 36 chr3 43461633 43461989 -184062589 + MSTC LTR MaLR 10 362 -66 2055 136 7 0 chr3 43461989 43462299 -184062279 + AluSx SINE Alu 1 312 0 2359 152 24 36 chr3 43462299 43462363 -184062215 + MSTC LTR MaLR 362 425 -3 6577 220 24 76 chr3 43462363 43463944 -184060634 - L1M4c LINE L1 -2612 3770 2263 2234 194 22 18 chr3 43464052 43464548 -184060030 - L1 LINE L1 -2221 5344 4847 * 5929 127 83 4 chr3 43464516 43465581 -184058997 - L1 LINE L1 -3925 3640 2492 229 235 0 0 chr3 43466012 43466063 -184058515 - L1MC4 LINE L1 -1339 6703 6653 * 307 278 0 0 chr3 43466032 43466122 -184058456 + L1MC4 LINE L1 6614 6703 -1339 * 313 228 0 22 chr3 43466080 43466172 -184058406 - L1MC4 LINE L1 -1339 6703 6614 1795 57 0 4 chr3 43466201 43466431 -184058147 - L1PA7 LINE L1 -15 6139 5911 8511 86 17 1 chr3 43466542 43468309 -184056269 - L1PA7 LINE L1 -217 5937 4149 5674 193 28 6 chr3 43468292 43470150 -184054428 - L1MA4A LINE L1 -331 5972 4075 * 16233 158 19 8 chr3 43470250 43473176 -184051402 - L1P LINE L1 -837 5309 2355 5156 226 42 49 chr3 43473183 43474777 -184049801 - L1P3 LINE L1 -4510 1941 400 1930 120 67 0 chr3 43474777 43475060 -184049518 + AluSx SINE Alu 1 302 -10 5156 226 42 49 chr3 43475060 43475448 -184049130 - L1P3 LINE L1 -6051 400 11 1929 129 29 0 chr3 43475632 43475912 -184048666 - AluSx SINE Alu -24 288 1 26 0 0 0 chr3 43476714 43476740 -184047838 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 43476851 43476880 -184047698 + AT_rich Low_complexity Low_complexity 1 29 0 1483 217 65 12 chr3 43477655 43477996 -184046582 + L1MB7 LINE L1 5826 6184 0 33 56 0 0 chr3 43478039 43478093 -184046485 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 43478151 43478179 -184046399 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 43478604 43478632 -184045946 + AT_rich Low_complexity Low_complexity 1 28 0 1438 173 111 15 chr3 43479439 43479780 -184044798 - MLT1A2 LTR MaLR 0 374 1 234 244 106 16 chr3 43480004 43480127 -184044451 + L1ME4a LINE L1 5985 6118 -3 6061 91 25 5 chr3 43480234 43481514 -184043064 - L1PA8A LINE L1 -1 6130 4840 299 318 14 84 chr3 43482064 43482350 -184042228 + L2 LINE L2 2152 2417 -897 37874 36 2 1 chr3 43483119 43489260 -184035318 + L1PA4 LINE L1 4 6152 -3 23 33 0 0 chr3 43489260 43489290 -184035288 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 43489308 43489336 -184035242 + AT_rich Low_complexity Low_complexity 1 28 0 1451 166 4 18 chr3 43489625 43489903 -184034675 - L1MB7 LINE L1 -16 6168 5895 1272 164 5 5 chr3 43490177 43490385 -184034193 + AluJo SINE Alu 87 294 -18 1021 216 118 31 chr3 43493863 43494220 -184030358 - LTR37A LTR ERV1 0 426 39 890 197 22 0 chr3 43494621 43494804 -184029774 + MER5A DNA MER1_type 3 189 0 795 174 33 33 chr3 43495445 43495629 -184028949 + L1MA9 LINE L1 6091 6274 -38 266 341 52 75 chr3 43495735 43496084 -184028494 - LTR16C LTR ERVL -67 424 84 219 356 83 0 chr3 43496368 43496500 -184028078 + MIR SINE MIR 22 164 -98 488 272 185 0 chr3 43496574 43496715 -184027863 - MIR SINE MIR -1 261 147 249 33 0 0 chr3 43496715 43496745 -184027833 + (CA)n Simple_repeat Simple_repeat 2 31 0 488 272 185 0 chr3 43496745 43496798 -184027780 - MIR SINE MIR -115 147 31 1530 240 179 7 chr3 43497904 43498450 -184026128 + L1MC4a LINE L1 6433 7072 -736 230 175 0 0 chr3 43498463 43498503 -184026075 + L1MC4 LINE L1 7211 7250 -792 302 257 129 24 chr3 43498504 43498714 -184025864 + L1MC4 LINE L1 7803 8034 -8 922 155 81 0 chr3 43498954 43499102 -184025476 + AluJb SINE Alu 138 297 -15 187 136 271 51 chr3 43499478 43499537 -184025041 - MIR SINE MIR -16 246 175 1467 33 0 16 chr3 43499577 43499759 -184024819 - L1PA3 LINE L1 0 6155 5977 5436 19 0 2 chr3 43499759 43500391 -184024187 + L1PA3 LINE L1 5357 5987 -168 390 42 0 0 chr3 43500935 43500983 -184023595 + (CA)n Simple_repeat Simple_repeat 1 48 0 211 161 0 143 chr3 43501563 43501596 -184022982 + L2 LINE L2 3249 3272 -41 1798 211 24 22 chr3 43501596 43501970 -184022608 + MLT2D LTR ERVL 1 378 -36 273 29 0 0 chr3 43501970 43502004 -184022574 + (CA)n Simple_repeat Simple_repeat 2 35 0 1798 211 24 22 chr3 43502004 43502042 -184022536 + MLT2D LTR ERVL 378 414 0 211 161 0 143 chr3 43502042 43502064 -184022514 + L2 LINE L2 3272 3296 -17 239 321 7 56 chr3 43503030 43503165 -184021413 + MIR SINE MIR 17 144 -64 488 251 256 18 chr3 43503779 43503998 -184020580 + Charlie2 DNA MER1_type 2 272 -2510 336 56 6 41 chr3 43503997 43504051 -184020527 + MLT1A2 LTR MaLR 312 459 -8 * 1002 284 59 22 chr3 43504114 43504470 -184020108 + L1MEc LINE L1 36 404 -5992 2715 200 69 99 chr3 43504470 43504558 -184020020 + L1ME1 LINE L1 5193 5282 -884 7750 17 1 1 chr3 43504558 43505952 -184018626 + L1PA2 LINE L1 4761 6154 -1 2715 200 69 99 chr3 43505952 43506062 -184018516 + L1ME1 LINE L1 5282 5394 -772 1792 175 0 22 chr3 43506062 43506377 -184018201 + AluJo SINE Alu 1 308 -4 2715 200 69 99 chr3 43506377 43507167 -184017411 + L1ME1 LINE L1 5394 6161 -5 185 81 0 54 chr3 43508125 43508162 -184016416 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr3 43508733 43508770 -184015808 + AT_rich Low_complexity Low_complexity 1 37 0 1732 233 30 4 chr3 43509182 43509641 -184014937 - Charlie4a DNA MER1_type -8 500 30 240 35 0 0 chr3 43510237 43510266 -184014312 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 270 323 217 22 chr3 43510869 43511145 -184013433 + L3 LINE CR1 1073 1402 -175 1568 234 17 34 chr3 43511528 43511946 -184012632 + L1MCb LINE L1 1 411 -5634 1290 265 52 7 chr3 43511952 43512416 -184012162 + L1M4 LINE L1 4076 4560 -1586 533 187 22 45 chr3 43512388 43512522 -184012056 + L1MC3 LINE L1 7654 7784 -1 * 201 244 26 51 chr3 43512989 43513067 -184011511 + CT-rich Low_complexity Low_complexity 2 77 0 1727 224 104 38 chr3 43513720 43514305 -184010273 - MLT1E2 LTR MaLR -2 624 1 530 270 95 56 chr3 43514382 43514634 -184009944 - MIR SINE MIR 0 262 1 182 308 90 13 chr3 43514894 43514972 -184009606 + L2 LINE L2 3230 3313 0 239 245 0 0 chr3 43515127 43515176 -184009402 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 379 296 161 0 chr3 43515801 43515987 -184008591 - MIR SINE MIR -31 231 16 1990 143 5 16 chr3 43516024 43516396 -184008182 + L1MA3 LINE L1 4269 4636 -1510 * 6296 126 38 6 chr3 43516373 43517482 -184007096 + L1MA3 LINE L1 5163 6305 0 212 0 36 0 chr3 43518013 43518041 -184006537 + (CA)n Simple_repeat Simple_repeat 1 29 0 1817 146 33 4 chr3 43518432 43518742 -184005836 - AluSg SINE Alu 0 318 1 26 0 0 0 chr3 43518742 43518768 -184005810 + AT_rich Low_complexity Low_complexity 1 26 0 591 317 135 43 chr3 43519074 43519716 -184004862 - L2 LINE L2 -3 3310 2603 183 343 14 14 chr3 43520003 43520076 -184004502 + MIR3 SINE MIR 88 160 -48 481 308 97 0 chr3 43520235 43520420 -184004158 + L2 LINE L2 3111 3313 0 924 142 39 13 chr3 43521669 43521824 -184002754 + MLT1A1 LTR MaLR 1 159 -206 2592 249 34 92 chr3 43521840 43522988 -184001590 + L1M1 LINE L1 21 2171 -5394 6838 53 11 3 chr3 43522988 43524365 -184000213 + L1PA7 LINE L1 4755 6141 -13 2592 249 34 92 chr3 43524365 43524594 -183999984 + L1M1 LINE L1 2171 2412 -5153 1328 240 45 178 chr3 43524592 43525282 -183999296 - L1M1 LINE L1 -5559 2006 317 * 10490 191 87 40 chr3 43525267 43528459 -183996119 + L1M1 LINE L1 2391 5814 -1751 414 0 0 0 chr3 43528459 43528505 -183996073 + (TG)n Simple_repeat Simple_repeat 2 47 0 10490 191 87 40 chr3 43528505 43529170 -183995408 + L1M1 LINE L1 5814 6446 -1119 632 235 104 131 chr3 43529170 43529682 -183994896 + LTR28 LTR ERV1 1 1305 -450 4128 208 32 18 chr3 43529771 43530646 -183993932 + MER52-int LTR ERV1 1 887 -6204 18951 148 19 11 chr3 43530668 43533853 -183990725 + MER52-int LTR ERV1 1003 4477 -2614 2006 188 30 29 chr3 43533853 43534411 -183990167 - MLT2A2 LTR ERVL 0 554 1 15018 113 14 37 chr3 43534411 43537085 -183987493 + MER52-int LTR ERV1 4473 7091 0 337 240 0 13 chr3 43537096 43537171 -183987407 + MER52C LTR ERV1 612 685 -593 1133 224 5 9 chr3 43537233 43537456 -183987122 + MLT1A1 LTR MaLR 144 365 0 229 387 32 24 chr3 43537606 43537730 -183986848 + L2 LINE L2 3137 3261 -11 390 115 0 0 chr3 43538085 43538103 -183986475 + (TG)n Simple_repeat Simple_repeat 1 79 0 390 115 0 0 chr3 43538103 43538164 -183986414 + (TG)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr3 43538916 43538939 -183985639 + AT_rich Low_complexity Low_complexity 1 23 0 344 235 8 114 chr3 43539030 43539078 -183985500 - MLT1H LTR MaLR -357 192 141 875 249 29 0 chr3 43539078 43539251 -183985327 + MER45A DNA AcHobo 1 178 0 344 235 8 114 chr3 43539251 43539334 -183985244 - MLT1H LTR MaLR -408 141 75 357 231 7 48 chr3 43539369 43539478 -183985100 - MIR SINE MIR -36 172 66 272 308 50 0 chr3 43540427 43540547 -183984031 - MIR SINE MIR -15 247 122 5469 189 10 12 chr3 43540549 43541450 -183983128 - L1PA16 LINE L1 -16 6150 5248 3258 199 30 77 chr3 43541450 43542466 -183982112 - LTR5 LTR ERVK 0 969 1 5469 189 10 12 chr3 43542466 43543582 -183980996 - L1PA16 LINE L1 -918 5248 4147 947 283 108 25 chr3 43543722 43544165 -183980413 - MLT1H LTR MaLR -26 523 1 181 62 125 0 chr3 43544485 43544517 -183980061 + L2 LINE L2 3221 3256 -16 201 229 0 0 chr3 43545407 43545455 -183979123 + (TA)n Simple_repeat Simple_repeat 1 48 0 329 295 42 91 chr3 43545457 43545574 -183979004 - L1MC4a LINE L1 -1836 5972 5851 1609 179 75 20 chr3 43545574 43545920 -183978658 - MLT1A1 LTR MaLR 0 365 1 329 295 42 91 chr3 43545920 43546087 -183978491 - L1MC4a LINE L1 -1957 5851 5702 294 350 105 0 chr3 43546138 43546338 -183978240 + MIR SINE MIR 39 259 -3 308 308 53 58 chr3 43546488 43546696 -183977882 - L1MC4a LINE L1 -2334 5474 5268 298 317 153 36 chr3 43546906 43547155 -183977423 - L2 LINE L2 -196 3117 2840 1828 23 0 0 chr3 43547343 43547558 -183977020 + L1PA2 LINE L1 5941 6155 0 210 185 37 0 chr3 43547874 43547928 -183976650 + (TG)n Simple_repeat Simple_repeat 2 57 0 2203 196 28 74 chr3 43548551 43549132 -183975446 + MLT2B3 LTR ERVL 1 554 0 429 307 51 71 chr3 43549685 43550095 -183974483 - LTR16C LTR ERVL -2 489 88 185 222 16 0 chr3 43550828 43550891 -183973687 + (TA)n Simple_repeat Simple_repeat 1 64 0 301 318 114 39 chr3 43551402 43551682 -183972896 - L1MC/D LINE L1 -1968 5840 5540 250 186 51 17 chr3 43551837 43551896 -183972682 - MER46C DNA MER2_type -223 115 55 1430 199 96 14 chr3 43552056 43552422 -183972156 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr3 43552968 43552993 -183971585 + AT_rich Low_complexity Low_complexity 1 25 0 467 282 47 18 chr3 43553473 43553692 -183970886 - L1M4c LINE L1 -4834 1708 1497 28 79 0 0 chr3 43553715 43553778 -183970800 + AT_rich Low_complexity Low_complexity 1 63 0 24 53 0 0 chr3 43553805 43553843 -183970735 + AT_rich Low_complexity Low_complexity 1 38 0 511 199 46 0 chr3 43553960 43554091 -183970487 + L1M4 LINE L1 4114 4250 -1896 549 253 101 56 chr3 43554184 43554379 -183970199 + L1M4 LINE L1 3401 3586 -2560 2167 86 38 3 chr3 43554379 43554670 -183969908 + AluY SINE Alu 1 301 -10 549 253 101 56 chr3 43554670 43554830 -183969748 + L1M4 LINE L1 3586 3772 -2374 228 277 15 23 chr3 43554845 43554975 -183969603 + L1MEc LINE L1 2506 2634 -4111 3806 208 134 120 chr3 43555063 43557113 -183967465 + L1MEc LINE L1 30 2419 -4326 3346 171 65 39 chr3 43557143 43559012 -183965566 + L1MC3 LINE L1 5825 7785 0 546 296 21 18 chr3 43559039 43559319 -183965259 + L1MEc LINE L1 2713 2993 -3571 1806 207 31 8 chr3 43559595 43559952 -183964626 - MLT1A1 LTR MaLR 0 365 1 348 226 118 10 chr3 43560141 43560243 -183964335 + MIR SINE MIR 113 225 -37 393 39 0 0 chr3 43561178 43561229 -183963349 + (TG)n Simple_repeat Simple_repeat 2 52 0 1026 106 0 0 chr3 43561333 43561465 -183963113 - L1P3 LINE L1 -6322 139 8 21 0 0 0 chr3 43562078 43562099 -183962479 + AT_rich Low_complexity Low_complexity 1 21 0 259 317 0 12 chr3 43562396 43562478 -183962100 - MIR3 SINE MIR -18 190 110 269 178 0 0 chr3 43563295 43563340 -183961238 - MIR3 SINE MIR -51 157 113 799 301 70 69 chr3 43563615 43564212 -183960366 + L2 LINE L2 72 669 -2645 594 271 89 99 chr3 43564439 43565236 -183959342 + HAL1 LINE L1 292 1080 -1427 1827 170 10 3 chr3 43565238 43565538 -183959040 + AluJb SINE Alu 3 304 -8 609 182 0 0 chr3 43567384 43567494 -183957084 - L1PB4 LINE L1 -100 6056 5947 1044 131 0 34 chr3 43567517 43567693 -183956885 - L1PA13 LINE L1 -11 6152 5983 336 228 51 0 chr3 43567758 43567837 -183956741 - L2 LINE L2 -3 3310 3228 1024 270 35 47 chr3 43567848 43568381 -183956197 - MER115 DNA AcHobo -4 4027 114 7713 23 2 0 chr3 43568510 43569800 -183954778 - L1PA3 LINE L1 -3 6152 4861 469 219 15 29 chr3 43569996 43570133 -183954445 - L1M4 LINE L1 -2713 3433 3299 503 86 0 0 chr3 43570869 43570939 -183953639 - L1P4 LINE L1 -679 5484 5415 2273 69 0 36 chr3 43571082 43571386 -183953192 + AluY SINE Alu 1 293 -18 4056 117 8 2 chr3 43571880 43572485 -183952093 - MER4B LTR ERV1 0 610 2 477 286 32 8 chr3 43572820 43572946 -183951632 - LTR16A LTR ERVL -297 153 25 746 357 35 27 chr3 43573079 43573706 -183950872 - HERV16 LTR ERVL -388 5376 4745 714 304 35 13 chr3 43573718 43573750 -183950828 - HERV16 LTR ERVL -4045 951 921 270 73 0 0 chr3 43573750 43573791 -183950787 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 714 304 35 13 chr3 43573791 43573988 -183950590 - HERV16 LTR ERVL -4075 921 717 8808 168 41 56 chr3 43574029 43576903 -183947675 - L1M1 LINE L1 -4431 3134 2 414 268 67 37 chr3 43578941 43579105 -183945473 + MIR SINE MIR 50 218 -44 1954 113 0 4 chr3 43579452 43579717 -183944861 - AluSg SINE Alu -46 264 1 1710 97 9 0 chr3 43579717 43579945 -183944633 - AluSp SINE Alu -2 311 82 345 279 121 21 chr3 43580251 43580391 -183944187 - MIR3 SINE MIR -15 193 40 732 186 29 7 chr3 43580739 43580879 -183943699 + MLT1D LTR MaLR 363 505 0 979 226 23 14 chr3 43581059 43581276 -183943302 - MER20 DNA MER1_type 0 219 1 25 0 0 0 chr3 43581362 43581387 -183943191 + AT_rich Low_complexity Low_complexity 1 25 0 642 306 17 12 chr3 43581460 43581633 -183942945 - MER5A DNA MER1_type 0 189 16 7090 185 72 27 chr3 43581837 43581984 -183942594 - L1MC3 LINE L1 0 7785 7646 2382 146 23 32 chr3 43581984 43582416 -183942162 - MSTA LTR MaLR 0 428 1 7090 185 72 27 chr3 43582416 43583885 -183940693 - L1MC3 LINE L1 -139 7646 6095 1012 292 94 49 chr3 43583919 43584286 -183940292 - L1M4 LINE L1 -2689 3457 3108 2157 98 27 24 chr3 43584286 43584581 -183939997 - AluSq SINE Alu -17 296 1 1012 292 94 49 chr3 43584581 43585129 -183939449 - L1M4 LINE L1 -3038 3108 2446 263 246 43 0 chr3 43585131 43585200 -183939378 - HAL1 LINE L1 -1082 1425 1354 319 196 32 18 chr3 43585207 43585319 -183939259 - Alu SINE Alu 0 301 248 518 257 57 46 chr3 43585321 43585496 -183939082 - HAL1 LINE L1 -1215 1292 1116 211 282 39 48 chr3 43585552 43585655 -183938923 + L2 LINE L2 2907 3008 -264 290 292 128 53 chr3 43586517 43586760 -183937818 - MIR SINE MIR 0 262 2 12300 191 23 31 chr3 43586793 43592336 -183932242 - L1PB1 LINE L1 0 6867 1392 733 244 19 14 chr3 43592312 43592521 -183932057 - L1PB1 LINE L1 -6646 217 8 * 195 299 35 23 chr3 43593174 43593261 -183931317 + MIR SINE MIR 1 88 -174 372 300 62 0 chr3 43596987 43597117 -183927461 - MIR SINE MIR -81 181 44 633 256 130 10 chr3 43598522 43598729 -183925849 + LTR16A1 LTR ERVL 226 457 0 798 271 89 7 chr3 43600180 43600472 -183924106 + L1ME3A LINE L1 5847 6162 -8 1539 173 92 46 chr3 43601254 43601624 -183922954 - MLT1B LTR MaLR -2 388 2 197 246 0 53 chr3 43602494 43602551 -183922027 + MIR SINE MIR 91 144 -118 194 277 21 0 chr3 43602520 43602567 -183922011 + MIR3 SINE MIR 115 162 -46 * 298 304 94 72 chr3 43602642 43602823 -183921755 - MIR3 SINE MIR 0 262 78 36 62 0 0 chr3 43604267 43604331 -183920247 + AT_rich Low_complexity Low_complexity 1 64 0 535 302 42 90 chr3 43604688 43605145 -183919433 - LTR16A1 LTR ERVL -9 448 14 595 270 56 92 chr3 43605174 43605212 -183919366 - L2 LINE L2 -1 3312 3274 1326 180 31 13 chr3 43605212 43605529 -183919049 + MER33 DNA MER1_type 2 324 0 595 270 56 92 chr3 43605529 43605849 -183918729 - L2 LINE L2 -39 3274 2967 293 228 102 31 chr3 43608150 43608277 -183916301 + MIR SINE MIR 70 205 -57 238 279 0 0 chr3 43608556 43608624 -183915954 + L1ME LINE L1 5382 5449 -717 2186 115 0 7 chr3 43609475 43609771 -183914807 + AluSx SINE Alu 1 294 -18 1514 178 54 18 chr3 43610888 43611164 -183913414 + AluJo SINE Alu 1 286 -26 207 406 0 0 chr3 43613164 43613260 -183911318 + L2 LINE L2 3166 3261 -52 565 294 115 2 chr3 43613751 43613967 -183910611 + MIR SINE MIR 25 259 -3 23 0 0 0 chr3 43614010 43614033 -183910545 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 43614455 43614476 -183910102 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 43614868 43614893 -183909685 + (T)n Simple_repeat Simple_repeat 1 25 0 187 267 0 0 chr3 43615102 43615147 -183909431 - L2 LINE L2 -13 3259 3215 260 353 85 30 chr3 43615285 43615486 -183909092 + MIR SINE MIR 25 236 -26 33 85 0 0 chr3 43616244 43616326 -183908252 + AT_rich Low_complexity Low_complexity 1 82 0 1431 269 83 57 chr3 43616359 43618177 -183906401 + L1ME3A LINE L1 4233 6097 -73 26 30 0 0 chr3 43618210 43618243 -183906335 + AT_rich Low_complexity Low_complexity 1 33 0 327 201 122 31 chr3 43618406 43618523 -183906055 - L1MC/D LINE L1 -928 5500 5377 192 77 0 0 chr3 43618529 43618555 -183906023 + (TTA)n Simple_repeat Simple_repeat 2 27 0 278 256 23 70 chr3 43618606 43618735 -183905843 + MIR SINE MIR 71 193 -69 184 395 106 16 chr3 43618924 43619349 -183905229 + L2 LINE L2 2510 2972 -342 213 121 0 0 chr3 43619601 43619634 -183904944 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 731 87 8 0 chr3 43619786 43619912 -183904666 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 300 91 0 0 chr3 43621597 43621641 -183902937 + (CA)n Simple_repeat Simple_repeat 1 44 0 5371 252 63 33 chr3 43622739 43625254 -183899324 - L1MEc LINE L1 -1726 4489 1930 562 271 191 5 chr3 43626135 43626345 -183898233 + MIR SINE MIR 1 249 -13 228 135 0 0 chr3 43626420 43626457 -183898121 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 187 325 38 25 chr3 43626461 43626541 -183898037 - L2 LINE L2 -4 3268 3188 7450 30 1 6 chr3 43626800 43628358 -183896220 + L1PA5 LINE L1 4596 6147 -7 24 0 0 0 chr3 43628358 43628382 -183896196 + AT_rich Low_complexity Low_complexity 1 24 0 273 274 52 74 chr3 43629972 43630107 -183894471 - MIR SINE MIR -123 139 8 286 253 84 0 chr3 43630159 43630242 -183894336 + L2 LINE L2 3224 3313 0 441 239 64 0 chr3 43630533 43630642 -183893936 - LTR16A1 LTR ERVL -7 450 335 609 342 27 42 chr3 43631011 43631417 -183893161 - L2 LINE L2 -2 3311 2912 258 364 88 57 chr3 43631580 43631877 -183892701 - L2 LINE L2 -49 3223 2918 263 299 41 10 chr3 43632066 43632163 -183892415 + MER5A DNA MER1_type 1 100 -89 312 253 11 11 chr3 43632412 43632499 -183892079 - MIR SINE MIR -85 177 91 496 293 143 45 chr3 43632720 43632958 -183891620 + L1ME4a LINE L1 5381 5594 -527 891 198 35 0 chr3 43632958 43633130 -183891448 - MER45A DNA AcHobo 0 178 1 496 293 143 45 chr3 43633130 43633465 -183891113 + L1ME4a LINE L1 5594 6010 -111 3347 139 44 19 chr3 43633685 43634273 -183890305 + LTR26 LTR ERV1 1 603 0 8685 183 9 22 chr3 43634530 43636762 -183887816 + L1PA16 LINE L1 3287 5473 -693 2321 100 0 28 chr3 43636762 43637082 -183887496 + AluSx SINE Alu 2 312 0 8685 183 9 22 chr3 43637082 43637759 -183886819 + L1PA16 LINE L1 5473 6157 -9 5467 23 0 0 chr3 43638159 43638806 -183885772 - L1PA2 LINE L1 -1280 4866 4220 7822 17 0 0 chr3 43638806 43640101 -183884477 + L1PA2 LINE L1 4860 6154 -1 337 314 29 36 chr3 43640254 43640394 -183884184 + MIR SINE MIR 1 139 -123 306 311 79 45 chr3 43640636 43640903 -183883675 + L1MC4a LINE L1 3589 3864 -2282 236 172 17 0 chr3 43641208 43641266 -183883312 + CT-rich Low_complexity Low_complexity 3 61 0 599 315 63 28 chr3 43641473 43642120 -183882458 + L1MC4a LINE L1 5264 5933 -1875 2427 94 3 6 chr3 43643103 43643454 -183881124 + L1PA13 LINE L1 5814 6163 0 1831 156 12 22 chr3 43643971 43644291 -183880287 - MER2 DNA MER2_type -27 318 2 22 35 0 0 chr3 43645067 43645096 -183879482 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 43645619 43645640 -183878938 + (TA)n Simple_repeat Simple_repeat 1 21 0 1967 120 29 0 chr3 43645643 43645917 -183878661 - AluSp SINE Alu -31 282 1 38 81 0 0 chr3 43647137 43647224 -183877354 + AT_rich Low_complexity Low_complexity 1 87 0 441 249 197 42 chr3 43647946 43648114 -183876464 - HAL1 LINE L1 -807 1700 1491 1849 159 27 0 chr3 43648114 43648409 -183876169 - AluJb SINE Alu -9 303 1 441 249 197 42 chr3 43648409 43648453 -183876125 - HAL1 LINE L1 -1016 1491 1455 347 0 0 0 chr3 43649329 43649371 -183875207 - L1PA3 LINE L1 -5 6150 6109 16963 192 26 28 chr3 43650240 43654635 -183869943 + L1PA10 LINE L1 1 4538 -1923 6073 74 54 16 chr3 43654656 43656094 -183868484 + L1PA10 LINE L1 4993 6478 -5 225 282 12 35 chr3 43656329 43656414 -183868164 - L1ME LINE L1 -473 5648 5566 740 196 0 8 chr3 43656487 43656620 -183867958 - FLAM_A SINE Alu -1 132 1 245 289 13 13 chr3 43656963 43657039 -183867539 + MIR SINE MIR 78 153 -55 692 308 103 34 chr3 43657256 43657701 -183866877 + L2 LINE L2 2827 3302 -11 300 70 0 0 chr3 43659999 43660042 -183864536 + (CA)n Simple_repeat Simple_repeat 2 44 0 433 286 145 38 chr3 43660901 43661405 -183863173 + L1M4 LINE L1 4289 4846 -1300 30 0 0 0 chr3 43661492 43661522 -183863056 + AT_rich Low_complexity Low_complexity 1 30 0 2280 109 0 0 chr3 43661741 43662043 -183862535 + AluSg SINE Alu 1 302 -8 6586 85 17 3 chr3 43662484 43664269 -183860309 - L1PA11 LINE L1 0 6174 4379 5814 239 22 16 chr3 43664285 43665577 -183859001 - L1PA12 LINE L1 -6277 1304 6 2385 83 0 13 chr3 43666198 43666510 -183858068 - AluY SINE Alu -3 308 1 495 298 82 80 chr3 43666749 43667125 -183857453 + MLT2E LTR ERVL 252 628 0 337 333 92 30 chr3 43667522 43667957 -183856621 + L2 LINE L2 612 1073 -2241 2167 127 0 0 chr3 43669065 43669364 -183855214 - AluY SINE Alu -12 299 1 193 211 77 0 chr3 43669784 43669836 -183854742 + L2 LINE L2 2672 2727 -587 771 213 58 0 chr3 43670381 43670536 -183854042 + FRAM SINE Alu 1 161 -15 181 217 174 0 chr3 43670621 43670667 -183853911 + L2 LINE L2 3242 3295 -18 225 276 0 17 chr3 43671364 43671422 -183853156 - L2 LINE L2 -80 3192 3136 239 262 103 0 chr3 43672190 43672297 -183852281 + L1ME LINE L1 5696 5813 -308 29 60 0 0 chr3 43672536 43672586 -183851992 + AT_rich Low_complexity Low_complexity 1 50 0 932 258 64 39 chr3 43672961 43673244 -183851334 - MLT1H LTR MaLR -188 361 72 198 316 18 70 chr3 43673430 43673544 -183851034 + L2 LINE L2 2988 3095 -177 320 275 48 61 chr3 43674044 43674284 -183850294 - L1 LINE L1 -2752 3394 3158 307 313 33 71 chr3 43674306 43674517 -183850061 - L1ME3A LINE L1 -5 6165 5963 303 256 45 30 chr3 43674677 43674810 -183849768 - L1ME3A LINE L1 -1994 5814 5680 1443 209 29 85 chr3 43674826 43675353 -183849225 + Charlie4a DNA MER1_type 1 497 -11 1189 299 22 32 chr3 43675398 43675802 -183848776 - MLT1I LTR MaLR -4 405 6 398 277 59 28 chr3 43675803 43676116 -183848462 - L1ME3A LINE L1 -552 5618 5283 3073 247 69 38 chr3 43677741 43678825 -183845753 + L1MC/D LINE L1 264 1381 -5226 214 188 12 38 chr3 43678866 43678946 -183845632 + (TATAA)n Simple_repeat Simple_repeat 3 80 0 185 60 40 40 chr3 43678965 43679015 -183845563 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 451 245 110 20 chr3 43679025 43679270 -183845308 + L1MC/D LINE L1 1288 1554 -4872 1334 258 71 48 chr3 43679270 43679293 -183845285 + MLT1E2 LTR MaLR 3 24 -602 2123 124 138 5 chr3 43679293 43679671 -183844907 - MSTA LTR MaLR 0 428 1 1334 258 71 48 chr3 43679671 43680257 -183844321 + MLT1E2 LTR MaLR 24 626 0 249 253 21 32 chr3 43680259 43680354 -183844224 + HAL1 LINE L1 1516 1609 -898 * 2528 232 23 33 chr3 43680330 43681286 -183843292 + L1MC/D LINE L1 4581 5523 -746 1054 277 126 14 chr3 43681299 43682075 -183842503 + L1ME3A LINE L1 4029 4891 -1255 2507 256 39 24 chr3 43682258 43683120 -183841458 + L1ME3A LINE L1 5285 6159 -11 26 50 0 0 chr3 43684452 43684492 -183840086 + AT_rich Low_complexity Low_complexity 1 40 0 351 0 0 0 chr3 43684687 43684726 -183839852 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 399 302 73 71 chr3 43684747 43685293 -183839285 + L1ME3A LINE L1 2737 3283 -3143 294 167 83 0 chr3 43685347 43685431 -183839147 + L1ME3A LINE L1 4140 4230 -2196 1927 155 35 62 chr3 43685465 43685621 -183838957 + MLT1B LTR MaLR 1 160 -230 1258 188 63 84 chr3 43685621 43686062 -183838516 + MSTB1 LTR MaLR 1 432 0 1927 155 35 62 chr3 43686062 43686306 -183838272 + MLT1B LTR MaLR 160 390 0 575 325 70 35 chr3 43686315 43687121 -183837457 + L1ME3A LINE L1 4293 5126 -1300 2719 125 19 0 chr3 43687402 43687835 -183836743 + L1MA5A LINE L1 5857 6297 0 668 251 128 80 chr3 43687941 43688567 -183836011 + L1ME3A LINE L1 5573 6228 -222 225 266 0 0 chr3 43689024 43689088 -183835490 + L1MEc LINE L1 3992 4055 -2371 4931 188 28 31 chr3 43689488 43689794 -183834784 - L1MC3 LINE L1 -7 7778 7473 2292 89 3 10 chr3 43689794 43690098 -183834480 - AluSg SINE Alu -8 302 1 4931 188 28 31 chr3 43690098 43690867 -183833711 - L1MC3 LINE L1 -312 7473 6706 455 184 88 61 chr3 43690875 43691022 -183833556 - MER106A DNA MER1_type -85 151 1 451 258 135 26 chr3 43691332 43691561 -183833017 + L1ME2 LINE L1 5902 6155 -9 696 240 157 29 chr3 43691575 43691893 -183832685 + MLT2C1 LTR ERVL 5 394 -3 231 294 65 25 chr3 43692566 43692767 -183831811 + L1MEc LINE L1 5471 5679 -747 1148 170 71 53 chr3 43693074 43693399 -183831179 - MER33 DNA MER1_type 0 324 1 345 287 87 59 chr3 43693501 43693787 -183830791 - L1M4 LINE L1 -2791 3355 3062 226 191 48 0 chr3 43693852 43693894 -183830684 - HAL1 LINE L1 -1137 1370 1327 252 341 9 14 chr3 43693921 43694049 -183830529 + CT-rich Low_complexity Low_complexity 1 213 0 245 265 34 14 chr3 43694697 43694844 -183829734 + A-rich Low_complexity Low_complexity 2 151 0 34 28 0 56 chr3 43694967 43695038 -183829540 + AT_rich Low_complexity Low_complexity 1 67 0 2198 237 55 38 chr3 43695043 43695135 -183829443 - MER77 LTR ERV1 0 605 516 4353 72 9 2 chr3 43695135 43695705 -183828873 - L1PA7 LINE L1 -6 6148 5575 2198 237 55 38 chr3 43695705 43696199 -183828379 - MER77 LTR ERV1 -89 516 9 183 139 0 0 chr3 43696209 43696245 -183828333 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 342 359 60 0 chr3 43697451 43697568 -183827010 + MIR3 SINE MIR 33 156 -52 414 290 76 7 chr3 43697618 43697763 -183826815 - MIR SINE MIR -17 245 91 1739 192 51 13 chr3 43698118 43698481 -183826097 + MLT2B2 LTR ERVL 1 397 0 411 217 54 11 chr3 43698833 43698925 -183825653 + L2 LINE L2 3213 3308 -5 2925 102 51 2 chr3 43699015 43699447 -183825131 - MLT2A2 LTR ERVL 0 453 1 323 246 120 7 chr3 43699924 43700066 -183824512 - MER103 DNA DNA -8 158 1 240 335 128 23 chr3 43700110 43700328 -183824250 + MIR SINE MIR 20 260 -2 227 188 42 0 chr3 43700774 43700822 -183823756 + L1MC4 LINE L1 6653 6702 -1340 246 250 71 0 chr3 43700823 43700907 -183823671 + L1MC4 LINE L1 6614 6703 -1339 257 192 0 0 chr3 43700933 43700985 -183823593 + L1MC4 LINE L1 6652 6703 -1339 244 284 54 0 chr3 43700985 43701059 -183823519 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 227 286 71 0 chr3 43701059 43701143 -183823435 - L1MC4 LINE L1 -1339 6703 6614 229 255 0 82 chr3 43701145 43701243 -183823335 - L1MC4 LINE L1 -1339 6703 6614 247 250 0 0 chr3 43701259 43701323 -183823255 + L1MC4 LINE L1 6640 6703 -1339 281 206 0 0 chr3 43701337 43701400 -183823178 + L1MC4 LINE L1 6640 6702 -1340 285 253 23 0 chr3 43701401 43701488 -183823090 + L1MC4 LINE L1 6614 6702 -1340 225 247 35 0 chr3 43701460 43701545 -183823033 - L1MC4 LINE L1 -1340 6702 6615 * 428 192 10 0 chr3 43701551 43701650 -183822928 + (TA)n Simple_repeat Simple_repeat 1 100 0 229 188 0 0 chr3 43701653 43701701 -183822877 - L1MC4 LINE L1 -1343 6699 6652 366 23 0 0 chr3 43701859 43701902 -183822676 + (TG)n Simple_repeat Simple_repeat 2 44 0 1511 219 43 12 chr3 43701903 43702228 -183822350 + MER58B DNA MER1_type 7 341 0 714 279 50 57 chr3 43703145 43703601 -183820977 + LTR16A1 LTR ERVL 5 457 0 446 256 45 15 chr3 43704868 43705001 -183819577 + L1ME2 LINE L1 6001 6137 -27 21 0 0 0 chr3 43705062 43705083 -183819495 + AT_rich Low_complexity Low_complexity 1 21 0 458 204 194 0 chr3 43705206 43705314 -183819264 + FLAM_C SINE Alu 1 129 -14 1912 174 38 36 chr3 43706128 43706595 -183817983 - MLT2D LTR ERVL 0 414 2 563 210 40 0 chr3 43707101 43707225 -183817353 - LTR16A LTR ERVL 0 450 322 1993 179 10 28 chr3 43708828 43709225 -183815353 - MLT1B LTR MaLR 0 390 1 687 286 70 56 chr3 43709799 43710281 -183814297 - MLT1J LTR MaLR 0 511 23 2414 215 16 33 chr3 43710281 43710706 -183813872 + MER67A LTR ERV1 1 417 -126 1304 229 27 56 chr3 43710706 43711082 -183813496 + MLT1A1 LTR MaLR 1 365 0 2414 215 16 33 chr3 43711082 43711204 -183813374 + MER67A LTR ERV1 417 539 -4 1250 178 91 86 chr3 43711717 43711800 -183812778 + MLT1B LTR MaLR 6 87 -303 2410 126 62 7 chr3 43711800 43712206 -183812372 - MSTA LTR MaLR 0 428 1 1250 178 91 86 chr3 43712206 43712505 -183812073 + MLT1B LTR MaLR 87 390 0 722 207 7 14 chr3 43712677 43712817 -183811761 - MER20 DNA MER1_type -1 218 80 537 309 106 19 chr3 43712817 43713024 -183811554 + L2 LINE L2 2864 3088 -225 344 270 22 0 chr3 43713030 43713119 -183811459 - MER20 DNA MER1_type -127 92 2 443 311 88 5 chr3 43713938 43714131 -183810447 - MIR SINE MIR -53 209 1 1578 237 109 26 chr3 43714495 43715411 -183809167 - L1M4b LINE L1 -3547 3410 2475 22 56 0 0 chr3 43715456 43715492 -183809086 + AT_rich Low_complexity Low_complexity 1 36 0 2689 224 20 65 chr3 43715598 43716428 -183808150 - L1M4b LINE L1 -4588 2371 1602 2140 136 0 0 chr3 43716428 43716730 -183807848 - AluSg SINE Alu -2 308 7 2689 224 20 65 chr3 43716730 43717191 -183807387 - L1M4b LINE L1 -5357 1602 1122 1017 301 98 21 chr3 43717201 43717450 -183807128 + L2 LINE L2 2896 3187 -126 297 109 0 0 chr3 43717450 43717496 -183807082 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1017 301 98 21 chr3 43717496 43717632 -183806946 + L2 LINE L2 3187 3311 -2 249 336 66 40 chr3 43718058 43718377 -183806201 + L2 LINE L2 2716 3059 -213 811 231 33 31 chr3 43718523 43718781 -183805797 - MLT1J2 LTR MaLR -177 269 1 208 259 259 12 chr3 43718871 43718956 -183805622 + L2 LINE L2 3151 3256 -16 246 98 39 20 chr3 43718967 43719018 -183805560 - MER116 DNA Mariner -13 67 16 257 383 61 0 chr3 43719335 43719450 -183805128 - L2 LINE L2 -8 3264 3143 242 330 107 0 chr3 43719463 43719566 -183805012 - L2 LINE L2 -607 2707 2594 219 261 0 0 chr3 43720882 43720928 -183803650 - MIR SINE MIR -66 142 97 43630 41 4 2 chr3 43721225 43727352 -183797226 + L1PA4 LINE L1 11 6147 -8 293 48 24 0 chr3 43727543 43727585 -183796993 - MADE1 DNA Mariner -2 78 36 1547 315 91 19 chr3 43727705 43728734 -183795844 - ERVL LTR ERVL -345 5140 4074 774 164 0 0 chr3 43729223 43729369 -183795209 + GA-rich Low_complexity Low_complexity 3 148 0 2298 104 0 0 chr3 43729653 43729951 -183794627 + AluSc SINE Alu 1 298 -11 306 329 0 0 chr3 43731873 43731958 -183792620 - MIR SINE MIR -13 249 165 207 319 66 22 chr3 43732887 43732978 -183791600 - L2 LINE L2 -9 3263 3169 186 367 44 11 chr3 43733201 43733291 -183791287 + MIR SINE MIR 1 93 -169 535 259 96 48 chr3 43733378 43733752 -183790826 + MLT1H LTR MaLR 70 586 -4 496 311 93 0 chr3 43733760 43733921 -183790657 + MIR SINE MIR 85 260 -2 422 301 62 14 chr3 43735160 43735306 -183789272 + MIR SINE MIR 73 225 -37 1956 144 100 3 chr3 43735307 43735627 -183788951 - MER83B LTR ERV1 0 378 28 2346 260 49 37 chr3 43735637 43736582 -183787996 - MER83B-int LTR ERV1 -11 8198 4527 614 294 61 0 chr3 43737545 43737790 -183786788 - MER83B-int LTR ERV1 -1957 2328 2069 639 348 49 20 chr3 43738221 43738787 -183785791 - MER83B-int LTR ERV1 -2070 6556 4549 2123 306 31 29 chr3 43739202 43740735 -183783843 - MER83B-int LTR ERV1 -1029 3925 2960 562 194 68 0 chr3 43740735 43740870 -183783708 - AluSg/x SINE Alu 0 313 172 328 324 37 62 chr3 43741081 43741535 -183783043 - MER83B-int LTR ERV1 -2188 2766 2324 261 298 11 0 chr3 43741670 43741764 -183782814 - MER83B-int LTR ERV1 -2772 2182 2088 1572 313 45 8 chr3 43741983 43742753 -183781825 - MER83B-int LTR ERV1 -3059 1895 1097 2697 291 63 27 chr3 43742879 43744067 -183780511 - MER83B-int LTR ERV1 -3304 981 12 1938 154 34 47 chr3 43744067 43744450 -183780128 - MER83B LTR ERV1 0 378 1 2297 174 24 2 chr3 43744660 43745074 -183779504 + MSTC LTR MaLR 6 428 0 23 92 0 0 chr3 43746173 43746238 -183778340 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr3 43746583 43746611 -183777967 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 43746665 43746693 -183777885 + AT_rich Low_complexity Low_complexity 1 28 0 251 358 67 17 chr3 43746732 43746852 -183777726 + MIR3 SINE MIR 81 206 -2 573 24 36 0 chr3 43747182 43747265 -183777313 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1453 158 42 115 chr3 43747414 43747984 -183776594 - L1M4 LINE L1 -5111 1744 1219 686 216 36 54 chr3 43748265 43748487 -183776091 - L1M4 LINE L1 -5710 1149 932 327 152 15 15 chr3 43748944 43749010 -183775568 + L1PB1 LINE L1 129 194 -6669 9875 153 30 27 chr3 43749010 43750743 -183773835 + L1PB1 LINE L1 995 2720 -4142 2096 137 3 10 chr3 43750743 43751049 -183773529 + AluSx SINE Alu 5 308 -4 9875 153 30 27 chr3 43751049 43753422 -183771156 + L1PB1 LINE L1 2720 5278 -1584 1754 118 115 13 chr3 43753422 43753733 -183770845 + L1PB1 LINE L1 6521 6865 -2 27 0 0 0 chr3 43753733 43753760 -183770818 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 43754096 43754132 -183770446 + AT_rich Low_complexity Low_complexity 1 36 0 231 169 12 48 chr3 43755089 43755172 -183769406 + (TA)n Simple_repeat Simple_repeat 2 81 0 352 75 19 0 chr3 43755181 43755234 -183769344 + MLT2B1 LTR ERVL 467 520 0 3748 166 53 42 chr3 43755234 43755742 -183768836 - L1MC3 LINE L1 -217 7848 7326 195 100 0 0 chr3 43755742 43755772 -183768806 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3748 166 53 42 chr3 43755772 43756112 -183768466 - L1MC3 LINE L1 -739 7326 6991 3739 215 28 10 chr3 43756116 43757770 -183766808 - L1MC3 LINE L1 -744 5682 4805 286 211 0 0 chr3 43757771 43757823 -183766755 - L1MC3 LINE L1 -6355 71 20 1642 208 0 0 chr3 43758145 43758433 -183766145 - AluJo SINE Alu -24 288 1 1990 168 112 11 chr3 43758627 43759073 -183765505 - L1MD1 LINE L1 -14 6228 5738 1438 184 52 96 chr3 43759071 43759138 -183765440 - L1MDa LINE L1 -4639 1901 1833 * 6578 169 27 56 chr3 43759138 43760843 -183763735 + L1PA15 LINE L1 4077 5776 -389 2363 100 7 0 chr3 43760843 43761153 -183763425 + AluSx SINE Alu 1 312 0 6578 169 27 56 chr3 43761153 43761530 -183763048 + L1PA15 LINE L1 5776 6162 -3 1438 184 52 96 chr3 43761530 43762064 -183762514 - L1MDa LINE L1 -4707 1833 1327 1588 172 114 65 chr3 43762070 43762501 -183762077 + LTR47A LTR ERVL 1 452 0 344 304 54 20 chr3 43762516 43762664 -183761914 + LTR47A-int LTR ERVL 16 168 -5175 205 182 0 0 chr3 43762902 43762935 -183761643 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 2068 238 29 59 chr3 43763005 43763652 -183760926 + LTR49-int LTR ERV1 1851 2478 -3853 10495 171 57 43 chr3 43763675 43765530 -183759048 + LTR49-int LTR ERV1 2657 4485 -1846 2473 41 7 0 chr3 43765530 43765825 -183758753 + AluY SINE Alu 2 298 -13 10495 171 57 43 chr3 43765825 43766385 -183758193 + LTR49-int LTR ERV1 4485 4759 -1572 4278 117 8 3 chr3 43766385 43766994 -183757584 - LTR9 LTR ERV1 0 612 1 10495 171 57 43 chr3 43766994 43767776 -183756802 + LTR49-int LTR ERV1 4759 5529 -802 2311 225 46 39 chr3 43767776 43767875 -183756703 + MER72 LTR ERV1 1 98 -624 2157 118 3 19 chr3 43767875 43768189 -183756389 + AluSx SINE Alu 1 309 -3 2311 225 46 39 chr3 43768189 43768787 -183755791 + MER72 LTR ERV1 98 703 -19 944 221 99 97 chr3 43768806 43769290 -183755288 + LTR49-int LTR ERV1 5591 6075 -683 1373 181 168 24 chr3 43769302 43769683 -183754895 + LTR47A LTR ERVL 16 451 -1 651 156 18 12 chr3 43769684 43769851 -183754727 - L1MDa LINE L1 -5214 1326 1159 1016 147 0 13 chr3 43769877 43770034 -183754544 - AluSp SINE Alu -25 288 134 1057 190 53 23 chr3 43770034 43770297 -183754281 - L1MDa LINE L1 -5362 1178 908 2282 217 76 39 chr3 43770297 43770918 -183753660 - L1MDa LINE L1 -5888 652 9 446 232 68 64 chr3 43771006 43771222 -183753356 - L1ME3A LINE L1 -92 6070 5856 284 243 14 0 chr3 43771228 43771302 -183753276 + L1M3 LINE L1 5366 5440 -722 567 235 13 19 chr3 43771368 43771540 -183753038 + L1M3 LINE L1 5669 5848 -332 2258 131 0 0 chr3 43771629 43771941 -183752637 + AluSx SINE Alu 1 312 0 2054 132 0 3 chr3 43772446 43772733 -183751845 - AluSx SINE Alu -26 286 1 21 0 0 0 chr3 43773059 43773080 -183751498 + AT_rich Low_complexity Low_complexity 1 21 0 334 328 52 29 chr3 43774546 43774720 -183749858 + MIR SINE MIR 17 194 -68 318 320 119 14 chr3 43774742 43775020 -183749558 + L1MC4a LINE L1 5728 6034 -1774 295 344 96 6 chr3 43775207 43775364 -183749214 + MIR3 SINE MIR 30 200 -8 429 261 163 7 chr3 43775368 43775521 -183749057 - L2 LINE L2 0 3313 3137 208 333 118 7 chr3 43775525 43775660 -183748918 - L2 LINE L2 -254 3018 2869 522 260 28 4 chr3 43775986 43776134 -183748444 - MIR SINE MIR -63 145 39 2314 82 0 3 chr3 43776669 43776984 -183747594 + AluSc SINE Alu 1 309 0 191 314 137 24 chr3 43777266 43777390 -183747188 + MIR SINE MIR 125 262 0 283 386 59 25 chr3 43778362 43778598 -183745980 - L2 LINE L2 -43 3229 2986 440 299 30 8 chr3 43779087 43779221 -183745357 + L2 LINE L2 3167 3303 -10 624 172 234 7 chr3 43779495 43779640 -183744938 - MER45A DNA AcHobo 0 178 1 646 299 69 10 chr3 43779964 43780168 -183744410 + MIR SINE MIR 24 239 -23 186 295 101 86 chr3 43780219 43780358 -183744220 + MIR3 SINE MIR 12 152 -56 25 0 0 0 chr3 43780654 43780679 -183743899 + GC_rich Low_complexity Low_complexity 1 25 0 680 160 0 0 chr3 43781295 43781420 -183743158 + L1PA11 LINE L1 6030 6154 -20 222 280 204 19 chr3 43783576 43783733 -183740845 + MIR SINE MIR 67 252 -10 231 284 40 28 chr3 43784704 43784880 -183739698 - L1ME4a LINE L1 0 6121 5944 663 184 18 99 chr3 43785031 43785303 -183739275 - L1MC5 LINE L1 -44 7917 7668 385 172 0 0 chr3 43785512 43785576 -183739002 - MIR SINE MIR -76 132 69 230 191 21 0 chr3 43786576 43786623 -183737955 - L2 LINE L2 -1 3312 3265 350 277 188 0 chr3 43786700 43786801 -183737777 + MER5B DNA MER1_type 12 131 -47 319 310 71 13 chr3 43786931 43787170 -183737408 - L1ME4a LINE L1 -314 5807 5555 2795 231 76 18 chr3 43787190 43788349 -183736229 - L1ME3A LINE L1 -5 6148 4928 877 264 44 22 chr3 43788354 43788672 -183735906 - L1ME3A LINE L1 -1273 4856 4532 361 313 63 71 chr3 43788673 43788941 -183735637 - L1ME3A LINE L1 -5488 631 366 4380 174 45 10 chr3 43788991 43789864 -183734714 - L1MB3 LINE L1 0 6183 5281 866 304 120 53 chr3 43789864 43790873 -183733705 - L1ME4a LINE L1 -633 5488 4395 1915 170 55 3 chr3 43790873 43791220 -183733358 - MLT1A1 LTR MaLR 0 365 1 866 304 120 53 chr3 43791220 43791334 -183733244 - L1ME4a LINE L1 -1726 4395 4290 390 284 108 36 chr3 43791370 43791592 -183732986 + MIR SINE MIR 1 238 -24 519 290 35 76 chr3 43792017 43792413 -183732165 - L1ME4a LINE L1 -2144 4002 3623 293 336 78 46 chr3 43792828 43793200 -183731378 + L2 LINE L2 1958 2341 -973 1820 293 141 33 chr3 43793720 43794026 -183730552 + L2 LINE L2 38 310 -3004 1737 183 41 0 chr3 43794026 43794197 -183730381 - AluJo SINE Alu -10 302 113 318 50 0 0 chr3 43794197 43794237 -183730341 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1737 183 41 0 chr3 43794237 43794355 -183730223 - AluJo SINE Alu -199 113 1 1820 293 141 33 chr3 43794355 43795068 -183729510 + L2 LINE L2 310 1167 -2147 692 315 54 84 chr3 43795082 43795196 -183729382 - L2 LINE L2 -129 3184 3068 1439 202 30 35 chr3 43795196 43795563 -183729015 + MLT1A1 LTR MaLR 1 365 0 692 315 54 84 chr3 43795563 43795835 -183728743 - L2 LINE L2 -245 3068 2789 1056 184 19 5 chr3 43795835 43796041 -183728537 - MER3 DNA MER1_type 0 209 1 692 315 54 84 chr3 43796041 43796303 -183728275 - L2 LINE L2 -524 2789 2559 1926 129 50 0 chr3 43796303 43796581 -183727997 + AluSx SINE Alu 1 292 -20 692 315 54 84 chr3 43796581 43796690 -183727888 - L2 LINE L2 -754 2559 2448 201 39 0 0 chr3 43796707 43796733 -183727845 + (TA)n Simple_repeat Simple_repeat 2 27 0 30 0 0 0 chr3 43798020 43798050 -183726528 + AT_rich Low_complexity Low_complexity 1 30 0 648 26 0 0 chr3 43799981 43800059 -183724519 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1088 92 0 27 chr3 43800059 43800103 -183724475 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 1088 92 0 27 chr3 43800103 43800288 -183724290 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 609 272 142 42 chr3 43800563 43800971 -183723607 - LTR16A1 LTR ERVL -8 449 1 197 119 24 0 chr3 43801902 43801944 -183722634 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 298 284 11 11 chr3 43802073 43802168 -183722410 - MIR3 SINE MIR -31 177 83 872 222 23 6 chr3 43802268 43802444 -183722134 - MER5A DNA MER1_type -10 179 1 640 217 29 29 chr3 43803361 43803536 -183721042 - MER45A DNA AcHobo 0 178 4 304 291 95 74 chr3 43803620 43803768 -183720810 - MIR3 SINE MIR -28 180 30 189 0 0 0 chr3 43803769 43803790 -183720788 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 283 270 22 11 chr3 43803977 43804066 -183720512 + GA-rich Low_complexity Low_complexity 1 90 0 331 364 0 14 chr3 43804071 43804214 -183720364 - MIR SINE MIR -31 231 91 223 242 30 0 chr3 43805086 43805152 -183719426 + T-rich Low_complexity Low_complexity 3 70 0 26 30 0 0 chr3 43805157 43805190 -183719388 + AT_rich Low_complexity Low_complexity 1 33 0 381 251 44 44 chr3 43805743 43805994 -183718584 + L1ME4a LINE L1 4394 4644 -1502 605 273 12 0 chr3 43806016 43806177 -183718401 + MIR SINE MIR 94 256 -6 328 259 76 84 chr3 43806194 43806537 -183718041 + L1ME4a LINE L1 5669 6008 -113 22 0 0 0 chr3 43806562 43806584 -183717994 + AT_rich Low_complexity Low_complexity 1 22 0 481 115 26 0 chr3 43806619 43806697 -183717881 + MADE1 DNA Mariner 1 80 0 1727 156 7 17 chr3 43807412 43807701 -183716877 - AluJo SINE Alu -15 297 12 833 278 68 7 chr3 43807895 43808176 -183716402 - LTR16A LTR ERVL -26 424 127 1023 236 18 0 chr3 43808315 43808535 -183716043 + MER58A DNA MER1_type 1 224 0 560 298 58 11 chr3 43808629 43808817 -183715761 + MIR SINE MIR 47 243 -19 370 231 58 29 chr3 43809312 43809415 -183715163 - MLT1J2 LTR MaLR 0 450 345 1335 243 62 71 chr3 43809415 43809950 -183714628 - MLT1E LTR MaLR 0 593 64 785 261 112 30 chr3 43810084 43810536 -183714042 + MLT1L LTR MaLR 7 540 -75 235 287 23 11 chr3 43812035 43812122 -183712456 - MIR SINE MIR -5 257 170 1030 260 177 40 chr3 43812626 43813179 -183711399 + L2 LINE L2 2304 2932 -382 315 277 50 50 chr3 43813466 43813585 -183710993 + MIR SINE MIR 24 142 -66 435 309 59 77 chr3 43813689 43814094 -183710484 - MLT1J LTR MaLR 0 511 114 244 264 35 49 chr3 43814412 43814556 -183710022 - L1M4 LINE L1 -1315 4831 4690 20778 70 21 0 chr3 43814608 43817452 -183707126 - L1P LINE L1 -3239 2907 3 24 32 0 0 chr3 43817617 43817648 -183706930 + AT_rich Low_complexity Low_complexity 1 31 0 341 294 99 28 chr3 43817666 43817877 -183706701 - L1M4 LINE L1 -1386 4760 4535 1382 190 4 12 chr3 43817878 43818131 -183706447 + AluJo SINE Alu 1 251 -61 207 88 0 0 chr3 43819128 43819162 -183705416 + (CA)n Simple_repeat Simple_repeat 2 35 0 615 297 110 67 chr3 43819232 43820465 -183704113 - L1M4 LINE L1 -2322 3824 2477 2328 89 3 0 chr3 43820465 43820768 -183703810 + AluSp SINE Alu 1 304 -9 615 297 110 67 chr3 43820768 43820936 -183703642 - L1M4 LINE L1 -3669 2477 2318 1088 222 55 18 chr3 43821063 43821607 -183702971 - LTR48B LTR ERV1 0 644 1 357 236 89 16 chr3 43821852 43821975 -183702603 + MIR SINE MIR 124 255 -7 2256 133 0 3 chr3 43822091 43822430 -183702148 + MER1B DNA MER1_type 1 338 -1 29 28 0 0 chr3 43823961 43823997 -183700581 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr3 43824146 43824183 -183700395 + AT_rich Low_complexity Low_complexity 1 37 0 329 309 39 22 chr3 43824857 43825057 -183699521 - MLT1J2 LTR MaLR -237 209 4 321 288 24 77 chr3 43825058 43825228 -183699350 + L1MC4a LINE L1 5754 5914 -1894 204 244 150 31 chr3 43825702 43825829 -183698749 + L2 LINE L2 3167 3308 -5 2329 203 22 90 chr3 43826079 43826976 -183697602 + L1MC4a LINE L1 6544 7361 -447 184 221 105 74 chr3 43828374 43828469 -183696109 + L2 LINE L2 3199 3296 -17 596 231 6 46 chr3 43828607 43828780 -183695798 - L2 LINE L2 0 3313 3148 1145 221 37 10 chr3 43828783 43829081 -183695497 + L1MC4 LINE L1 7403 7708 -334 327 254 14 14 chr3 43829354 43829496 -183695082 + L1MC4 LINE L1 7901 8042 0 1124 251 89 43 chr3 43829558 43830209 -183694369 - L2 LINE L2 -257 3056 2365 282 340 94 70 chr3 43831119 43831448 -183693130 - L2 LINE L2 0 3272 2936 2195 149 57 3 chr3 43831616 43831986 -183692592 - MLT1B LTR MaLR 0 390 1 345 302 111 60 chr3 43832226 43832478 -183692100 - L1M2a LINE L1 -5899 1269 1005 703 292 23 15 chr3 43833119 43833334 -183691244 - MIR SINE MIR -33 229 15 2296 104 0 3 chr3 43833395 43833693 -183690885 + AluSx SINE Alu 1 297 -15 663 265 22 16 chr3 43833756 43833941 -183690637 + MIR SINE MIR 70 255 -7 357 305 42 0 chr3 43834674 43834792 -183689786 - MIR3 SINE MIR -21 187 65 400 252 143 8 chr3 43835973 43836092 -183688486 + MIR SINE MIR 18 152 -110 * 2668 273 224 29 chr3 43836090 43837733 -183686845 + L2 LINE L2 1233 3195 -118 7540 26 2 6 chr3 43837737 43838768 -183685810 + L1PA3 LINE L1 5128 6155 0 25 0 0 0 chr3 43838780 43838805 -183685773 + AT_rich Low_complexity Low_complexity 1 25 0 216 209 0 23 chr3 43838858 43838901 -183685677 + MIR SINE MIR 26 67 -195 361 309 84 21 chr3 43839097 43839288 -183685290 + L1M4 LINE L1 3622 3824 -2322 3077 252 84 71 chr3 43839474 43840935 -183683643 + L2 LINE L2 1847 3309 -4 231 338 31 25 chr3 43841167 43841327 -183683251 + HAL1b LINE L1 1187 1347 -1 718 152 13 32 chr3 43841374 43841532 -183683046 - L1 LINE L1 -1464 4682 4528 939 128 53 58 chr3 43841580 43841768 -183682810 - MER20 DNA MER1_type -3 216 30 567 130 57 130 chr3 43841770 43841962 -183682616 - MER53 DNA DNA 0 189 12 247 360 0 0 chr3 43842082 43842168 -183682410 - MIR SINE MIR -157 105 20 383 266 81 8 chr3 43842305 43842429 -183682149 - MIR SINE MIR -93 169 37 255 319 0 69 chr3 43842875 43842991 -183681587 + L2 LINE L2 2992 3099 -173 587 237 151 7 chr3 43843281 43843433 -183681145 + MER5A DNA MER1_type 9 182 -7 473 291 46 13 chr3 43843620 43843771 -183680807 - MIR3 SINE MIR -48 160 5 282 264 91 33 chr3 43844880 43845001 -183679577 - MIR SINE MIR -50 212 85 214 318 45 11 chr3 43845832 43845920 -183678658 - MIR SINE MIR -63 199 109 210 143 0 0 chr3 43846197 43846232 -183678346 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr3 43846493 43846521 -183678057 + (CA)n Simple_repeat Simple_repeat 2 29 0 4062 113 143 140 chr3 43847730 43849119 -183675459 - pTR5 LTR ERV1 0 2438 79 196 349 0 0 chr3 43849538 43849604 -183674974 + L2 LINE L2 3205 3270 -2 251 280 32 80 chr3 43849719 43849844 -183674734 - L2 LINE L2 0 3313 3195 1095 130 0 0 chr3 43850499 43850668 -183673910 + L1MA4 LINE L1 6131 6299 -1 2036 115 4 4 chr3 43851457 43851735 -183672843 + AluSx SINE Alu 1 278 -34 251 194 81 32 chr3 43853038 43853100 -183671478 + MER103 DNA DNA 82 146 -20 1095 158 0 12 chr3 43853153 43853317 -183671261 - FRAM SINE Alu -21 155 1 570 229 9 0 chr3 43853377 43853482 -183671096 - FLAM_A SINE Alu -32 110 5 437 285 145 0 chr3 43853507 43853693 -183670885 - L3 LINE CR1 -191 1386 1174 2213 104 3 0 chr3 43853762 43854125 -183670453 + AluSx SINE Alu 1 364 0 181 250 154 0 chr3 43854299 43854351 -183670227 + L3 LINE CR1 1081 1140 -437 338 0 24 0 chr3 43854597 43854639 -183669939 + (TG)n Simple_repeat Simple_repeat 2 44 0 1067 205 135 46 chr3 43854958 43855328 -183669250 + LTR16A1 LTR ERVL 55 457 0 214 364 0 11 chr3 43856750 43856838 -183667740 + CT-rich Low_complexity Low_complexity 5 91 0 297 188 31 0 chr3 43857269 43857333 -183667245 + AluSp/q SINE Alu 236 301 -2 320 261 36 27 chr3 43857619 43857730 -183666848 - MIR SINE MIR -39 223 112 1704 191 29 29 chr3 43859159 43859536 -183665042 - MER74C LTR ERVL -83 377 1 2330 102 0 0 chr3 43859546 43859850 -183664728 + AluSg SINE Alu 1 304 -6 416 250 86 0 chr3 43859890 43860006 -183664572 + MER117 DNA MER1_type 16 141 -56 312 257 104 49 chr3 43860307 43860451 -183664127 + L2 LINE L2 3159 3310 -3 1101 246 54 54 chr3 43861446 43861796 -183662782 + MLT1H LTR MaLR 1 350 -199 293 264 57 36 chr3 43862756 43862949 -183661629 + HAL1 LINE L1 1114 1310 -1197 198 103 0 0 chr3 43863069 43863098 -183661480 + (CA)n Simple_repeat Simple_repeat 2 30 0 2199 112 0 0 chr3 43863423 43863717 -183660861 + AluSc SINE Alu 1 294 -15 361 277 0 0 chr3 43864270 43864364 -183660214 - MARNA DNA Mariner -44 542 449 2053 89 0 0 chr3 43865224 43865481 -183659097 + AluSc SINE Alu 1 257 -52 553 294 32 18 chr3 43865742 43865960 -183658618 + MARNA DNA Mariner 143 363 -223 2451 89 0 6 chr3 43865968 43866283 -183658295 - AluSp SINE Alu 0 313 1 355 266 63 35 chr3 43868330 43868473 -183656105 - MIR SINE MIR -110 152 6 234 0 0 0 chr3 43868862 43868888 -183655690 + (T)n Simple_repeat Simple_repeat 1 26 0 870 78 0 26 chr3 43869245 43869360 -183655218 - L1PA15 LINE L1 -15 6150 6039 345 284 158 0 chr3 43869559 43869686 -183654892 + MIR SINE MIR 81 227 -35 6943 107 17 18 chr3 43869888 43870995 -183653583 - L1MA5A LINE L1 0 6297 5189 256 57 0 0 chr3 43871172 43871207 -183653371 - L1MA5A LINE L1 -963 5183 5149 567 0 0 0 chr3 43871673 43871736 -183652842 + (CA)n Simple_repeat Simple_repeat 2 64 0 640 322 57 4 chr3 43872677 43872904 -183651674 - LTR16A LTR ERVL -40 410 172 556 240 10 78 chr3 43873462 43873666 -183650912 - MLT1H LTR MaLR -329 220 31 1357 247 131 14 chr3 43874592 43875074 -183649504 + MLT1H LTR MaLR 12 549 0 273 218 0 0 chr3 43875105 43875160 -183649418 + MLT1I LTR MaLR 54 108 -301 236 234 0 31 chr3 43875400 43875464 -183649114 + MLT1I LTR MaLR 348 409 0 380 265 110 55 chr3 43876035 43876235 -183648343 - MIR SINE MIR -39 223 13 1961 86 31 0 chr3 43877106 43877361 -183647217 + AluSp SINE Alu 1 263 -50 315 0 0 0 chr3 43877370 43877405 -183647173 + (TAA)n Simple_repeat Simple_repeat 2 36 0 451 14 14 81 chr3 43877542 43877616 -183646962 - L1PA3 LINE L1 0 6155 6087 2960 77 29 0 chr3 43877817 43878193 -183646385 - L1PA10 LINE L1 -6 6162 5776 573 237 103 42 chr3 43878193 43878573 -183646005 - L1MCa LINE L1 -3445 2684 2282 410 232 81 72 chr3 43878658 43878946 -183645632 - L1MCa LINE L1 -3862 2267 1945 441 291 99 26 chr3 43879167 43879510 -183645068 - L1MCa LINE L1 -4580 1730 1363 802 297 50 68 chr3 43879621 43879665 -183644913 - L1MCa LINE L1 -4925 1194 1151 1837 177 3 7 chr3 43879665 43879970 -183644608 - AluJb SINE Alu -6 306 3 802 297 50 68 chr3 43879970 43880643 -183643935 - L1MCa LINE L1 -4968 1151 490 332 188 0 12 chr3 43880650 43880730 -183643848 + CT-rich Low_complexity Low_complexity 2 80 0 310 314 0 57 chr3 43880994 43881169 -183643409 - L1MCa LINE L1 -5949 170 6 191 200 50 0 chr3 43882387 43882427 -183642151 + MIR SINE MIR 107 148 -114 222 171 29 114 chr3 43882442 43882512 -183642066 + L3 LINE CR1 1507 1570 -7 358 260 52 10 chr3 43882528 43882624 -183641954 - MER5A DNA MER1_type -77 112 13 1005 271 44 39 chr3 43882834 43883218 -183641360 - L2 LINE L2 -729 2585 2200 419 278 30 8 chr3 43883207 43883340 -183641238 - MIR SINE MIR -56 206 71 * 2740 23 0 7 chr3 43884265 43884575 -183640003 - AluY SINE Alu -3 308 1 24 32 0 0 chr3 43884659 43884690 -183639888 + AT_rich Low_complexity Low_complexity 1 31 0 195 42 0 0 chr3 43884944 43884968 -183639610 + (TA)n Simple_repeat Simple_repeat 1 24 0 222 195 0 0 chr3 43885829 43885870 -183638708 + (CAA)n Simple_repeat Simple_repeat 3 43 0 695 267 106 17 chr3 43885878 43886114 -183638464 - MIR SINE MIR -3 259 3 442 244 104 0 chr3 43886163 43886278 -183638300 - MER63 DNA MER1_type -81 755 3 324 0 0 0 chr3 43886377 43886413 -183638165 + (TA)n Simple_repeat Simple_repeat 2 37 0 1569 183 37 0 chr3 43886413 43886713 -183637865 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 43886721 43886745 -183637833 + AT_rich Low_complexity Low_complexity 1 24 0 989 194 21 31 chr3 43888383 43888574 -183636004 - MER5A DNA MER1_type 0 189 1 217 289 26 40 chr3 43888693 43888769 -183635809 - MER5B DNA MER1_type -103 75 1 257 346 52 39 chr3 43889145 43889298 -183635280 - L2 LINE L2 -6 3266 3112 230 267 108 51 chr3 43889843 43890038 -183634540 - L2 LINE L2 -1056 2258 2053 773 203 0 0 chr3 43890213 43890336 -183634242 + FLAM_A SINE Alu 1 123 -10 204 238 48 0 chr3 43890377 43890419 -183634159 - L2 LINE L2 -19 3294 3251 233 288 24 24 chr3 43891124 43891249 -183633329 + (CCTA)n Simple_repeat Simple_repeat 4 128 0 315 300 27 18 chr3 43893019 43893129 -183631449 - MIR3 SINE MIR -94 114 4 494 276 103 61 chr3 43894283 43894491 -183630087 - L3 LINE CR1 -242 1335 1108 1735 173 14 0 chr3 43894491 43894774 -183629804 - AluJo SINE Alu -25 287 1 494 276 103 61 chr3 43894774 43894876 -183629702 - L3 LINE CR1 -469 1108 1012 359 256 23 0 chr3 43894982 43895068 -183629510 + MER81 DNA DNA 1 88 -26 348 182 61 0 chr3 43895062 43895128 -183629450 + MER81 DNA DNA 44 113 -1 * 568 325 98 27 chr3 43896963 43897606 -183626972 + L2 LINE L2 2587 3270 -43 265 286 48 29 chr3 43897697 43897802 -183626776 - MIR3 SINE MIR -13 195 89 22 35 0 0 chr3 43898343 43898372 -183626206 + AT_rich Low_complexity Low_complexity 1 29 0 259 245 19 88 chr3 43898935 43899094 -183625484 + HAL1 LINE L1 50 197 -2310 886 244 9 55 chr3 43899104 43899432 -183625146 + HAL1 LINE L1 1498 1810 -697 722 180 0 43 chr3 43899516 43899655 -183624923 + AluSq/x SINE Alu 1 133 -180 1919 141 25 0 chr3 43899657 43899959 -183624619 + AluSx SINE Alu 1 309 0 386 320 104 4 chr3 43899966 43900216 -183624362 + HAL1 LINE L1 1936 2210 -297 418 296 187 0 chr3 43900283 43900513 -183624065 + HAL1 LINE L1 2230 2502 -5 22 35 0 0 chr3 43900953 43900982 -183623596 + AT_rich Low_complexity Low_complexity 1 29 0 232 217 29 0 chr3 43901152 43901221 -183623357 + HAL1 LINE L1 2058 2128 -379 203 273 0 0 chr3 43903404 43903448 -183621130 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 350 10 68 chr3 43903835 43903938 -183620640 - MIR3 SINE MIR -111 97 1 209 265 29 0 chr3 43904709 43904777 -183619801 + (TA)n Simple_repeat Simple_repeat 1 70 0 232 319 155 17 chr3 43904793 43904909 -183619669 + MIR3 SINE MIR 10 141 -67 2758 74 6 0 chr3 43905133 43905484 -183619094 + THE1A LTR MaLR 3 355 0 11598 86 11 9 chr3 43905484 43907061 -183617517 + THE1A-int LTR MaLR 1 1580 0 2757 76 3 0 chr3 43907061 43907415 -183617163 + THE1A LTR MaLR 1 355 0 969 168 21 0 chr3 43907672 43907862 -183616716 + L1PB1 LINE L1 2 195 -6668 11900 186 28 55 chr3 43907867 43909663 -183614915 + L1PB1 LINE L1 1111 2954 -3913 264 30 0 0 chr3 43909663 43909696 -183614882 + (CA)n Simple_repeat Simple_repeat 2 34 0 11900 186 28 55 chr3 43909696 43912432 -183612146 + L1PB1 LINE L1 2954 5703 -1164 2924 85 44 21 chr3 43912432 43912866 -183611712 + MLT2A1 LTR ERVL 1 444 0 11900 186 28 55 chr3 43912866 43914001 -183610577 + L1PB1 LINE L1 5703 6867 0 6081 31 3 5 chr3 43914027 43914798 -183609780 + L1PA4 LINE L1 5254 6022 -133 518 115 0 23 chr3 43914924 43915011 -183609567 + AluJ/FRAM SINE Alu 221 305 -7 481 286 76 50 chr3 43915012 43915945 -183608633 + L1 LINE L1 2888 3878 -2268 2193 131 3 10 chr3 43917316 43917630 -183606948 - AluSx SINE Alu 0 312 1 508 189 11 108 chr3 43918406 43918591 -183605987 - MER112 DNA MER1_type -20 240 74 397 268 80 0 chr3 43918953 43919065 -183605513 + MIR SINE MIR 124 244 -18 196 419 0 0 chr3 43919091 43919165 -183605413 - MIR SINE MIR -169 93 20 222 284 0 25 chr3 43919560 43919641 -183604937 + CT-rich Low_complexity Low_complexity 1 79 0 805 217 57 0 chr3 43919835 43920010 -183604568 - MER5A DNA MER1_type -2 187 3 22439 100 12 2 chr3 43920121 43923584 -183600994 - L1PA7 LINE L1 -1284 4862 1365 6964 55 10 3 chr3 43923584 43924859 -183599719 + L1PA7 LINE L1 4868 6148 -6 26 0 0 0 chr3 43924859 43924885 -183599693 + AT_rich Low_complexity Low_complexity 1 26 0 325 295 84 32 chr3 43925060 43925250 -183599328 + MIR SINE MIR 48 247 -15 249 281 161 25 chr3 43927474 43927673 -183596905 + MIR SINE MIR 31 256 -6 241 465 0 0 chr3 43927761 43927832 -183596746 + A-rich Low_complexity Low_complexity 1 71 0 351 256 14 87 chr3 43928283 43928423 -183596155 + MIR SINE MIR 34 163 -63 328 282 55 0 chr3 43928447 43928557 -183596021 + L2 LINE L2 2729 2844 -470 285 29 0 0 chr3 43928566 43928600 -183595978 + (T)n Simple_repeat Simple_repeat 1 34 0 410 311 106 35 chr3 43928747 43929030 -183595548 + L2 LINE L2 3011 3313 0 2102 109 0 11 chr3 43929117 43929432 -183595146 + AluSx SINE Alu 1 312 0 1202 150 27 139 chr3 43929679 43930340 -183594238 - MER4A LTR ERV1 0 679 66 2314 105 7 0 chr3 43930340 43930646 -183593932 - AluSq SINE Alu -5 308 1 1202 150 27 139 chr3 43930646 43930706 -183593872 - MER4A LTR ERV1 -613 66 1 393 319 31 31 chr3 43931003 43931163 -183593415 + MIR3 SINE MIR 4 163 -45 1659 176 4 18 chr3 43931732 43932011 -183592567 + AluJo SINE Alu 1 275 -37 207 0 0 0 chr3 43932011 43932034 -183592544 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 369 206 0 0 chr3 43932210 43932312 -183592266 + (CA)n Simple_repeat Simple_repeat 1 102 0 237 238 32 16 chr3 43933437 43933500 -183591078 + L3b LINE CR1 1283 1346 -237 237 220 77 66 chr3 43933752 43933843 -183590735 - MIR3 SINE MIR -111 97 6 1191 236 26 21 chr3 43934041 43934418 -183590160 - LTR37A LTR ERV1 -1 425 47 189 250 19 19 chr3 43934534 43934586 -183589992 - MIR SINE MIR -121 141 90 272 262 135 43 chr3 43934587 43934728 -183589850 + MER5A DNA MER1_type 36 189 0 269 296 37 25 chr3 43934728 43934808 -183589770 - MIR SINE MIR -105 103 23 1070 185 39 10 chr3 43936179 43936384 -183588194 + AluJo SINE Alu 1 211 -101 872 100 8 0 chr3 43986388 43986518 -183538060 + LTR12 LTR ERV1 362 492 -222 * 3047 146 12 40 chr3 43986511 43987194 -183537384 - pTR5 LTR ERV1 -1038 1400 737 453 204 0 0 chr3 43987573 43987666 -183536912 - L1MB5 LINE L1 -8 6166 6074 3115 133 40 0 chr3 43987692 43988211 -183536367 - L1MA2 LINE L1 0 6304 5765 1957 141 3 3 chr3 43988554 43988844 -183535734 + AluSx SINE Alu 1 290 -22 198 301 102 61 chr3 43989513 43989709 -183534869 + MIR SINE MIR 19 222 -40 209 116 0 47 chr3 43992682 43992725 -183531853 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 606 221 15 0 chr3 43992737 43992868 -183531710 - AluJb SINE Alu -1 311 179 214 158 0 0 chr3 43993139 43993177 -183531401 + CT-rich Low_complexity Low_complexity 1 38 0 252 244 24 12 chr3 43995767 43995849 -183528729 - L1MC4 LINE L1 -5 8037 7955 21009 43 6 9 chr3 43995885 43999317 -183525261 + L1HS LINE L1 2621 6034 -121 212 203 40 54 chr3 43999479 43999553 -183525025 - MIR SINE MIR -59 203 131 619 198 42 70 chr3 44001746 44001885 -183522693 + MLT1G1 LTR MaLR 1 126 -429 1720 166 83 56 chr3 44001885 44002330 -183522248 - MSTB2 LTR MaLR 0 457 1 619 198 42 70 chr3 44002330 44002472 -183522106 + MLT1G1 LTR MaLR 126 271 -284 653 218 9 2 chr3 44002491 44002644 -183521934 + MLT1G1 LTR MaLR 431 595 0 429 192 10 20 chr3 44003812 44003911 -183520667 + MER103 DNA DNA 23 120 -46 309 323 108 16 chr3 44004983 44005169 -183519409 - L1M4 LINE L1 -3243 2903 2701 2221 117 17 0 chr3 44005247 44005547 -183519031 - AluSx SINE Alu -7 305 1 540 276 25 25 chr3 44006126 44006289 -183518289 - MIR SINE MIR -49 213 51 1133 187 60 26 chr3 44007314 44007655 -183516923 + MSTD LTR MaLR 4 396 0 1047 182 0 0 chr3 44008867 44009032 -183515546 + FRAM SINE Alu 1 165 -11 565 179 26 0 chr3 44009399 44009516 -183515062 + MLT1D LTR MaLR 386 505 0 243 188 0 0 chr3 44009859 44009907 -183514671 + (CA)n Simple_repeat Simple_repeat 2 49 0 279 288 0 0 chr3 44010853 44010926 -183513652 + L2 LINE L2 2684 2756 -558 398 242 176 7 chr3 44013023 44013172 -183511406 + MIR SINE MIR 61 233 -29 28 29 0 0 chr3 44013258 44013293 -183511285 + AT_rich Low_complexity Low_complexity 1 35 0 186 366 24 0 chr3 44013634 44013716 -183510862 - MIR SINE MIR -77 185 102 582 294 20 10 chr3 44014293 44014494 -183510084 + MLT2F LTR ERVL 9 211 -452 466 274 146 49 chr3 44014521 44014871 -183509707 + MLT2F LTR ERVL 280 663 0 724 286 53 0 chr3 44014871 44015042 -183509536 - MIR SINE MIR -60 202 23 264 226 0 0 chr3 44015288 44015350 -183509228 + (CA)n Simple_repeat Simple_repeat 1 62 0 308 214 191 0 chr3 44016987 44017076 -183507502 + MLT1J1 LTR MaLR 57 162 -284 3845 192 22 1 chr3 44017394 44018159 -183506419 - L1MD1 LINE L1 -18 6618 5838 391 133 0 0 chr3 44018175 44018250 -183506328 - L1MA4A LINE L1 -8 6295 6221 3804 253 62 17 chr3 44018263 44019972 -183504606 - L1MD1 LINE L1 -744 5796 4027 1590 178 48 17 chr3 44019976 44020268 -183504310 - AluJo SINE Alu -6 306 6 327 315 28 0 chr3 44020382 44020490 -183504088 + L1M4 LINE L1 3258 3368 -2778 288 269 0 0 chr3 44020506 44020599 -183503979 + L1M4 LINE L1 3334 3426 -2720 355 230 0 0 chr3 44020602 44020689 -183503889 + L1M4 LINE L1 3566 3652 -2494 262 203 0 0 chr3 44020767 44020831 -183503747 - L1MD1 LINE L1 -2887 3653 3590 6664 68 25 0 chr3 44020833 44022040 -183502538 - L1PA7 LINE L1 0 6154 4956 4381 72 0 0 chr3 44022048 44022655 -183501923 + L1P LINE L1 1538 2144 -4002 3533 115 0 0 chr3 44022657 44023205 -183501373 + L1P LINE L1 2230 2777 -3369 2579 246 31 23 chr3 44023201 44023340 -183501238 - L1MD1 LINE L1 -2959 3581 3445 * 2156 123 0 7 chr3 44023340 44023640 -183500938 - AluSc SINE Alu -7 302 5 2579 246 31 23 chr3 44023640 44024464 -183500114 - L1MD1 LINE L1 -3095 3445 2610 2893 252 76 26 chr3 44024466 44025613 -183498965 - L1MD1 LINE L1 -5243 1297 17 1638 224 19 17 chr3 44025734 44026095 -183498483 - MLT1A1 LTR MaLR 0 365 4 6722 204 17 89 chr3 44026096 44026674 -183497904 - MLT1A1-int LTR MaLR -21 1714 1096 2421 124 22 0 chr3 44026674 44027030 -183497548 - THE1B LTR MaLR 0 364 1 6722 204 17 89 chr3 44027030 44028298 -183496280 - MLT1A1-int LTR MaLR -639 1096 1 1876 198 20 3 chr3 44028298 44028656 -183495922 - MLT1A1 LTR MaLR 0 365 2 281 313 15 53 chr3 44029121 44029178 -183495400 + MIR SINE MIR 135 193 -69 1366 174 23 103 chr3 44029178 44029574 -183495004 + MLT1A1 LTR MaLR 2 365 0 281 313 15 53 chr3 44029574 44029647 -183494931 + MIR SINE MIR 193 260 -2 535 264 101 0 chr3 44031407 44031555 -183493023 + Tigger5 DNA MER2_type 1 163 -2160 790 153 6 80 chr3 44031584 44031699 -183492879 + Tigger5 DNA MER2_type 2173 2274 -49 6627 116 26 25 chr3 44031699 44032769 -183491809 - MER11C LTR ERVK 0 1071 1 790 153 6 80 chr3 44032769 44032816 -183491762 + Tigger5 DNA MER2_type 2274 2323 0 509 185 8 0 chr3 44033961 44034080 -183490498 + (TA)n Simple_repeat Simple_repeat 2 121 0 784 316 100 34 chr3 44034356 44034824 -183489754 + L2 LINE L2 325 823 -2491 18609 183 24 72 chr3 44035135 44038269 -183486309 + L1MA2 LINE L1 16 3297 -4426 964 156 0 0 chr3 44038269 44038410 -183486168 + AluJb SINE Alu 1 141 -171 18609 183 24 72 chr3 44038410 44038753 -183485825 + L1MA2 LINE L1 3297 3655 -4068 2004 85 89 3 chr3 44038753 44039035 -183485543 + AluSq SINE Alu 1 306 -7 18609 183 24 72 chr3 44039035 44043524 -183481054 + L1MA2 LINE L1 3655 7723 0 2874 144 30 10 chr3 44043542 44044043 -183480535 - Tigger3b DNA MER2_type -681 550 40 207 69 0 0 chr3 44044044 44044073 -183480505 + (GA)n Simple_repeat Simple_repeat 2 30 0 304 298 81 16 chr3 44044227 44044351 -183480227 - MIR SINE MIR -55 207 76 183 339 0 32 chr3 44044419 44044481 -183480097 + L2 LINE L2 3232 3291 -22 1218 143 221 3 chr3 44045575 44045882 -183478696 - MLT1A2 LTR MaLR 0 374 1 333 239 35 35 chr3 44045888 44046001 -183478577 - MER117 DNA MER1_type -84 113 1 742 289 168 10 chr3 44047277 44047671 -183476907 - LTR16A1 LTR ERVL 0 457 2 262 214 114 53 chr3 44048280 44048411 -183476167 + MIR SINE MIR 121 259 -3 573 262 148 0 chr3 44050074 44050257 -183474321 + MIR SINE MIR 48 257 -5 326 219 49 122 chr3 44050721 44050885 -183473693 + MLT1I LTR MaLR 232 383 -26 514 278 17 23 chr3 44052308 44052484 -183472094 - MIR SINE MIR 0 262 88 23 33 0 0 chr3 44052744 44052774 -183471804 + AT_rich Low_complexity Low_complexity 1 30 0 441 128 256 15 chr3 44053050 44053183 -183471395 - MER103 DNA DNA -1 165 1 236 196 65 14 chr3 44053310 44053448 -183471130 + (TA)n Simple_repeat Simple_repeat 1 145 0 186 167 0 0 chr3 44053460 44053496 -183471082 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 319 315 0 0 chr3 44053499 44053588 -183470990 - L1MC4 LINE L1 -1339 6703 6615 305 333 0 0 chr3 44053517 44053607 -183470971 + L1MC4 LINE L1 6614 6703 -1339 * 560 245 118 18 chr3 44053732 44054084 -183470494 + LTR52 LTR ERVL 1 421 0 203 91 121 0 chr3 44054115 44054148 -183470430 + L2 LINE L2 3265 3301 -12 246 284 30 67 chr3 44054882 44055016 -183469562 + LTR16A1 LTR ERVL 1 129 -328 400 294 7 28 chr3 44055407 44055550 -183469028 + LTR67 LTR ERVL 6 145 -412 548 320 128 6 chr3 44056232 44056551 -183468027 + L2 LINE L2 2007 2364 -950 23 33 0 0 chr3 44056666 44056696 -183467882 + AT_rich Low_complexity Low_complexity 1 30 0 6111 139 29 4 chr3 44057276 44058682 -183465896 + L1MA3 LINE L1 4858 6299 -6 232 286 25 17 chr3 44058713 44058832 -183465746 + L1M4 LINE L1 2161 2280 -3866 201 268 0 18 chr3 44059600 44059656 -183464922 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 191 170 21 0 chr3 44059672 44059719 -183464859 + (TA)n Simple_repeat Simple_repeat 2 49 0 284 302 160 12 chr3 44060188 44060357 -183464221 - MIR SINE MIR -64 198 5 323 239 0 15 chr3 44061433 44061500 -183463078 + MIR SINE MIR 41 106 -102 1760 249 64 40 chr3 44062765 44063435 -183461143 - L1ME3A LINE L1 -7 6163 5478 26 0 0 0 chr3 44063657 44063683 -183460895 + AT_rich Low_complexity Low_complexity 1 26 0 21 82 0 0 chr3 44064016 44064065 -183460513 + AT_rich Low_complexity Low_complexity 1 49 0 313 324 77 0 chr3 44064140 44064347 -183460231 + L1M4 LINE L1 3729 3951 -2195 490 349 64 32 chr3 44064362 44064929 -183459649 + L1M4 LINE L1 3946 4543 -1603 317 172 0 106 chr3 44065067 44065265 -183459313 + G-rich Low_complexity Low_complexity 1 177 0 240 130 0 0 chr3 44065286 44065332 -183459246 + (G)n Simple_repeat Simple_repeat 1 46 0 303 122 0 0 chr3 44065387 44065436 -183459142 + L1PA3 LINE L1 6104 6152 -3 349 288 41 34 chr3 44065702 44065848 -183458730 - MIR3 SINE MIR -18 190 44 480 251 35 41 chr3 44066828 44066999 -183457579 + MER5B DNA MER1_type 2 171 -7 3980 199 11 55 chr3 44068612 44068749 -183455829 + L1 LINE L1 3960 4101 -2045 2613 36 0 0 chr3 44068749 44069055 -183455523 + L1PA3 LINE L1 5845 6152 -3 3980 199 11 55 chr3 44069055 44069995 -183454583 + L1 LINE L1 4101 4990 -1156 4566 29 2 0 chr3 44069998 44070557 -183454021 + L1PA4 LINE L1 5460 6019 -136 315 274 143 57 chr3 44072061 44072236 -183452342 - MIR SINE MIR -70 192 3 317 336 26 4 chr3 44073191 44073417 -183451161 - MER46C DNA MER2_type -8 330 100 1593 83 0 0 chr3 44074863 44075079 -183449499 - L1PA5 LINE L1 0 6154 5939 1277 121 6 0 chr3 44075182 44075364 -183449214 + AluSg/x SINE Alu 122 304 -8 235 159 0 0 chr3 44075453 44075497 -183449081 + L1MC3 LINE L1 7721 7764 -21 193 359 48 29 chr3 44075509 44075612 -183448966 + MIR SINE MIR 40 144 -64 355 245 96 0 chr3 44075736 44075830 -183448748 + MER5A DNA MER1_type 10 112 -77 195 98 24 98 chr3 44075812 44075853 -183448725 - MER5A DNA MER1_type -108 81 44 * 3648 133 46 59 chr3 44076159 44076688 -183447890 - LTR8 LTR ERV1 0 691 172 3805 65 21 0 chr3 44076688 44077168 -183447410 + LTR2B LTR ERV1 1 490 0 3648 133 46 59 chr3 44077168 44077338 -183447240 - LTR8 LTR ERV1 -519 172 1 539 238 75 0 chr3 44077907 44078054 -183446524 - MER103 DNA DNA -2 164 7 7708 21 2 0 chr3 44078140 44079055 -183445523 + L1PA3 LINE L1 5236 6152 -3 253 276 141 35 chr3 44079117 44079316 -183445262 + L1M3c LINE L1 187 406 -5907 5173 237 39 59 chr3 44079885 44080988 -183443590 + L1M3c LINE L1 805 1928 -4454 3958 198 17 0 chr3 44080988 44081709 -183442869 - MER44D DNA MER2_type 0 605 1 5173 237 39 59 chr3 44081709 44081805 -183442773 + L1M3c LINE L1 1928 2024 -4358 2041 139 126 8 chr3 44081805 44082187 -183442391 - MSTA LTR MaLR 0 428 2 8777 169 33 5 chr3 44082188 44083794 -183440784 - MSTA-int LTR MaLR 0 1651 1 2136 130 138 5 chr3 44083794 44084172 -183440406 - MSTA LTR MaLR 0 428 1 5173 237 39 59 chr3 44084172 44086795 -183437783 + L1M3c LINE L1 2023 4695 -1687 455 122 12 0 chr3 44086795 44086875 -183437703 + L1PB1 LINE L1 6061 6143 -8 189 0 0 0 chr3 44086879 44086900 -183437678 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5173 237 39 59 chr3 44086900 44086971 -183437607 + L1M3c LINE L1 4698 4769 -1613 863 145 0 179 chr3 44086971 44087206 -183437372 + 7SK RNA RNA 1 193 0 5173 237 39 59 chr3 44087206 44087830 -183436748 + L1M3c LINE L1 4769 5151 -1231 3034 229 104 12 chr3 44087847 44089145 -183435433 + L1M4 LINE L1 3238 4768 -1378 3549 221 40 19 chr3 44089145 44090367 -183434211 + L1MC/D LINE L1 4207 5446 -743 1182 293 66 6 chr3 44090905 44091376 -183433202 + LTR33 LTR ERVL 23 521 0 1686 146 20 37 chr3 44092309 44092658 -183431920 + L1MC2 LINE L1 5989 6331 -13 816 267 117 29 chr3 44093376 44093822 -183430756 + MER90 LTR ERV1 126 610 -4 468 345 39 12 chr3 44093841 44094099 -183430479 - LTR16C LTR ERVL -137 354 90 199 281 24 37 chr3 44094236 44094318 -183430260 - MIR SINE MIR -103 159 79 1730 187 0 20 chr3 44094353 44094652 -183429926 + AluJb SINE Alu 1 293 -19 844 226 67 46 chr3 44095582 44095910 -183428668 - LTR43 LTR ERV1 -137 465 131 303 148 0 0 chr3 44096038 44096092 -183428486 - LTR60 LTR ERV1 -532 54 1 468 246 51 17 chr3 44096312 44096487 -183428091 + L1MC5 LINE L1 7733 7913 -48 22 0 0 0 chr3 44096799 44096821 -183427757 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 44097111 44097132 -183427446 + AT_rich Low_complexity Low_complexity 1 21 0 381 246 40 24 chr3 44097484 44097610 -183426968 + MLT1H LTR MaLR 1 128 -421 213 39 0 0 chr3 44098783 44098809 -183425769 + (GA)n Simple_repeat Simple_repeat 1 26 0 2101 132 0 3 chr3 44100902 44101205 -183423373 + AluSp SINE Alu 1 302 -11 366 188 0 0 chr3 44101766 44101846 -183422732 + L1ME2 LINE L1 6085 6164 0 287 318 101 8 chr3 44102177 44102306 -183422272 + MIR3 SINE MIR 64 204 -4 243 0 0 0 chr3 44102761 44102788 -183421790 + (A)n Simple_repeat Simple_repeat 1 27 0 183 139 0 0 chr3 44102802 44102838 -183421740 + (TA)n Simple_repeat Simple_repeat 1 36 0 554 40 0 14 chr3 44103772 44103846 -183420732 + (TC)n Simple_repeat Simple_repeat 2 74 0 365 296 122 21 chr3 44103933 44104220 -183420358 - L1 LINE L1 -2804 3342 3027 975 137 17 11 chr3 44104341 44104516 -183420062 - L1PB4 LINE L1 -102 6054 5879 609 170 195 0 chr3 44104550 44104709 -183419869 - L1PB4 LINE L1 -777 5369 5180 6272 176 18 38 chr3 44104709 44106338 -183418240 - L1MA2 LINE L1 -367 5789 4352 2350 97 3 0 chr3 44106338 44106636 -183417942 + AluSp SINE Alu 4 302 -11 6272 176 18 38 chr3 44106636 44107191 -183417387 - L1MA2 LINE L1 -1804 4352 3787 4317 149 32 46 chr3 44107194 44108121 -183416457 - L1MC3 LINE L1 -146 7639 6726 1983 173 26 42 chr3 44108121 44108598 -183415980 + MLT2B2 LTR ERVL 1 453 0 2998 174 25 53 chr3 44108599 44109279 -183415299 - L1MC3 LINE L1 -1056 6729 6069 2254 103 0 3 chr3 44109279 44109600 -183414978 + THE1B LTR MaLR 45 364 0 288 227 13 27 chr3 44109600 44109675 -183414903 - L1MC2 LINE L1 -271 6073 6000 1500 199 75 35 chr3 44109690 44109900 -183414678 - L1M4 LINE L1 -1308 4838 4638 2084 125 17 0 chr3 44109900 44110188 -183414390 - AluSx SINE Alu -19 293 1 1500 199 75 35 chr3 44110188 44110460 -183414118 - L1M4 LINE L1 -1508 4638 4337 478 294 110 44 chr3 44110942 44111350 -183413228 - LTR16A1 LTR ERVL -13 444 10 1822 168 0 32 chr3 44111564 44111873 -183412705 - AluJo SINE Alu -10 302 4 2160 113 140 11 chr3 44112561 44112940 -183411638 - MSTA LTR MaLR 0 428 1 486 143 0 0 chr3 44113348 44113425 -183411153 + MER81 DNA DNA 30 106 -8 1640 204 131 18 chr3 44115003 44115569 -183409009 - MLT1E2 LTR MaLR -2 624 8 592 204 113 30 chr3 44117156 44117386 -183407192 + Charlie2 DNA MER1_type 2611 2859 -3 12125 152 45 46 chr3 44118011 44120683 -183403895 - L1PB1 LINE L1 -2 6865 4191 1302 112 28 0 chr3 44120683 44120861 -183403717 - AluSq SINE Alu -22 291 109 12125 152 45 46 chr3 44120861 44124264 -183400314 - L1PB1 LINE L1 -2676 4191 636 882 195 26 0 chr3 44124266 44124461 -183400117 - L1PB1 LINE L1 -6663 200 1 234 306 61 0 chr3 44125788 44125886 -183398692 + MIR SINE MIR 118 221 -41 1981 157 3 0 chr3 44126453 44126747 -183397831 - AluJo SINE Alu -17 295 1 216 0 0 0 chr3 44129755 44129779 -183394799 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 328 304 83 50 chr3 44130064 44130231 -183394347 + MIR SINE MIR 41 216 -46 382 310 49 0 chr3 44130341 44130483 -183394095 - L1M4 LINE L1 -1487 4659 4511 427 306 144 14 chr3 44130547 44130769 -183393809 - L1MDa LINE L1 -3959 2581 2331 738 194 62 48 chr3 44131371 44131644 -183392934 + L1ME3 LINE L1 4152 4428 -1718 2493 234 48 24 chr3 44131888 44132695 -183391883 + L1MB7 LINE L1 4142 4968 -1178 687 134 0 0 chr3 44132714 44132811 -183391767 + AluJ/FLAM SINE Alu 1 97 -215 2626 196 33 40 chr3 44132812 44133504 -183391074 + L1MA9 LINE L1 5588 6274 -38 292 200 13 0 chr3 44133527 44133602 -183390976 + L1MB7 LINE L1 4989 5064 -1082 1398 261 60 57 chr3 44133626 44134157 -183390421 + L1ME3 LINE L1 5421 5956 -206 2334 167 34 0 chr3 44134157 44134571 -183390007 + MSTB1 LTR MaLR 1 428 -4 1398 261 60 57 chr3 44134571 44134778 -183389800 + L1ME3 LINE L1 5956 6161 -1 289 298 58 16 chr3 44135070 44135191 -183389387 + MIR SINE MIR 32 157 -105 869 96 0 15 chr3 44135267 44135402 -183389176 + FLAM_C SINE Alu 1 133 0 3949 195 23 18 chr3 44136011 44137137 -183387441 + L1MB7 LINE L1 5036 6167 -17 183 42 0 0 chr3 44137288 44137312 -183387266 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 328 289 107 7 chr3 44137403 44137552 -183387026 + MIR SINE MIR 42 205 -57 199 271 100 71 chr3 44137589 44137759 -183386819 + MER5A DNA MER1_type 14 188 -1 2293 109 3 0 chr3 44138659 44138963 -183385615 + AluSp SINE Alu 3 307 -6 1844 51 0 0 chr3 44140577 44140794 -183383784 - AluY SINE Alu 0 311 95 226 322 98 44 chr3 44141194 44141377 -183383201 - L2 LINE L2 -5 3267 3075 418 292 31 12 chr3 44141506 44141667 -183382911 + MIR SINE MIR 96 259 -3 195 343 10 20 chr3 44141951 44142050 -183382528 + MIR SINE MIR 49 146 -116 2210 87 169 203 chr3 44142288 44143103 -183381475 - pTR5 LTR ERV1 0 2438 1651 561 64 0 0 chr3 44143475 44143553 -183381025 + (TC)n Simple_repeat Simple_repeat 1 78 0 292 198 54 81 chr3 44143898 44144009 -183380569 - MLT1I LTR MaLR -270 139 32 2187 72 0 7 chr3 44144225 44144518 -183380060 + AluY SINE Alu 1 291 -20 2038 159 0 0 chr3 44145203 44145505 -183379073 + AluJb SINE Alu 3 304 -8 2324 103 7 0 chr3 44147400 44147702 -183376876 - AluSg SINE Alu -6 304 1 2163 144 69 62 chr3 44148094 44148517 -183376061 - MSTB LTR MaLR 0 426 1 608 148 13 110 chr3 44148562 44148607 -183375971 - MER96B DNA MER1_type? -5 412 364 1828 168 3 3 chr3 44148607 44148898 -183375680 - AluJb SINE Alu -21 291 1 608 148 13 110 chr3 44148898 44149007 -183375571 - MER96B DNA MER1_type? -53 364 273 242 242 114 60 chr3 44150418 44150567 -183374011 - MER104 DNA Tc2 -2 178 22 208 276 57 21 chr3 44150733 44150840 -183373738 + MIR SINE MIR 3 116 -92 705 259 179 32 chr3 44150856 44151398 -183373180 - L2 LINE L2 -1 3312 2688 684 264 43 5 chr3 44151621 44151829 -183372749 + LTR16C LTR ERVL 265 480 -11 897 300 44 12 chr3 44152267 44152587 -183371991 - LTR16A LTR ERVL -1 449 120 270 200 0 0 chr3 44153185 44153249 -183371329 + MIR SINE MIR 94 140 -68 251 314 172 55 chr3 44153732 44154057 -183370521 - L2 LINE L2 -834 2480 2118 2816 220 38 34 chr3 44154072 44154835 -183369743 - L1ME1 LINE L1 -5 6161 5396 375 310 101 0 chr3 44154894 44155052 -183369526 - L2 LINE L2 -1258 2056 1883 400 202 0 11 chr3 44155122 44155211 -183369367 + LTR50 LTR ERVL 407 494 -301 1493 263 57 7 chr3 44155252 44155674 -183368904 - LTR16A LTR ERVL -7 443 1 294 246 107 33 chr3 44155685 44155807 -183368771 + LTR50 LTR ERVL 552 682 -113 564 182 167 78 chr3 44157293 44157485 -183367093 + MER3 DNA MER1_type 1 209 0 669 267 11 6 chr3 44157525 44157705 -183366873 - Zaphod DNA AcHobo 0 4031 3851 330 190 0 0 chr3 44157716 44157774 -183366804 - Zaphod DNA AcHobo -1170 2861 2804 242 205 0 0 chr3 44158146 44158185 -183366393 - MER115 DNA AcHobo -159 534 496 871 223 271 0 chr3 44158206 44158498 -183366080 - MER115 DNA AcHobo -322 371 1 1621 133 80 4 chr3 44158775 44159038 -183365540 - AluJo SINE Alu -29 283 1 572 205 17 8 chr3 44160006 44160123 -183364455 + MER5C DNA MER1_type 7 124 -200 204 283 17 0 chr3 44160450 44160510 -183364068 + (CA)n Simple_repeat Simple_repeat 1 61 0 351 278 91 10 chr3 44160685 44160883 -183363695 - L1ME LINE L1 -346 5775 5562 2615 148 21 5 chr3 44161634 44162053 -183362525 + MSTB LTR MaLR 1 426 0 2236 113 0 7 chr3 44162143 44162445 -183362133 - AluSq SINE Alu -13 300 1 264 59 0 0 chr3 44162919 44162953 -183361625 + (CA)n Simple_repeat Simple_repeat 2 35 0 978 170 50 25 chr3 44163506 44163706 -183360872 - MER3 DNA MER1_type -4 205 1 1738 104 6 76 chr3 44163835 44164152 -183360426 + L1MA2 LINE L1 5997 6291 -13 1272 144 5 15 chr3 44164152 44164354 -183360224 + THE1B LTR MaLR 1 200 -164 259 153 0 153 chr3 44164491 44164563 -183360015 + THE1B LTR MaLR 295 355 0 12016 89 8 0 chr3 44164563 44166131 -183358447 + THE1B-int LTR MaLR 1 1580 0 2404 110 28 28 chr3 44166131 44166495 -183358083 + THE1B LTR MaLR 1 364 0 275 305 17 68 chr3 44166588 44166706 -183357872 + MIR SINE MIR 30 141 -67 2430 61 7 0 chr3 44166720 44167013 -183357565 + AluY SINE Alu 1 295 -16 1952 158 0 0 chr3 44167022 44167313 -183357265 + AluJb SINE Alu 1 291 -21 1968 118 17 21 chr3 44168692 44168980 -183355598 + AluSq SINE Alu 1 287 -26 241 371 54 19 chr3 44169657 44169916 -183354662 - L3 LINE CR1 -29 1548 1281 2182 151 124 81 chr3 44169977 44170508 -183354070 + MLT2B3 LTR ERVL 1 554 0 260 195 122 0 chr3 44170594 44170676 -183353902 + MER5A DNA MER1_type 18 109 -80 246 306 61 0 chr3 44170720 44170818 -183353760 - L3 LINE CR1 -443 1134 1031 1569 177 40 7 chr3 44171584 44171861 -183352717 + AluJb SINE Alu 1 286 -26 353 123 15 0 chr3 44171868 44171933 -183352645 + (CA)n Simple_repeat Simple_repeat 2 67 0 601 259 90 0 chr3 44172077 44172266 -183352312 - L2 LINE L2 -5 3308 3103 541 222 194 33 chr3 44172268 44172448 -183352130 - MER3 DNA MER1_type 0 209 1 569 266 97 28 chr3 44172471 44172793 -183351785 - L2 LINE L2 -244 3069 2721 285 238 93 60 chr3 44172877 44173028 -183351550 + L2 LINE L2 2262 2417 -897 494 284 65 9 chr3 44173029 44173141 -183351437 + L2 LINE L2 1659 1763 -1551 279 0 0 0 chr3 44173141 44173172 -183351406 + (CA)n Simple_repeat Simple_repeat 1 31 0 494 284 65 9 chr3 44173172 44173274 -183351304 + L2 LINE L2 1763 1885 -1429 410 274 142 0 chr3 44173304 44173508 -183351070 + L2 LINE L2 2429 2661 -653 299 148 0 16 chr3 44176209 44176270 -183348308 + (TA)n Simple_repeat Simple_repeat 2 61 0 285 75 0 0 chr3 44176387 44176427 -183348151 + (TC)n Simple_repeat Simple_repeat 1 40 0 390 296 97 5 chr3 44177521 44177707 -183346871 - L2 LINE L2 -3 3310 3108 1122 248 21 7 chr3 44177723 44178013 -183346565 - MER90 LTR ERV1 0 614 321 7345 43 3 0 chr3 44178163 44179377 -183345201 + L1PA5 LINE L1 4906 6123 -31 836 203 49 167 chr3 44179577 44180189 -183344389 - MER34B LTR ERV1 -2 540 1 529 196 188 0 chr3 44180200 44180338 -183344240 + MER5A DNA MER1_type 26 189 0 1651 168 19 32 chr3 44182473 44182789 -183341789 - AluJo SINE Alu 0 312 1 1097 278 101 9 chr3 44184936 44185382 -183339196 + LTR16C LTR ERVL 3 489 -2 300 232 117 59 chr3 44185397 44185542 -183339036 + MLT1I LTR MaLR 96 267 -179 201 237 171 40 chr3 44185771 44185923 -183338655 - L2 LINE L2 -147 3166 2995 1082 245 93 58 chr3 44186115 44186547 -183338031 - LTR16A1 LTR ERVL -10 447 1 207 0 0 0 chr3 44187464 44187487 -183337091 + (T)n Simple_repeat Simple_repeat 1 23 0 291 212 30 0 chr3 44187773 44187839 -183336739 + MIR SINE MIR 59 126 -82 2065 151 0 3 chr3 44188169 44188480 -183336098 + AluSx SINE Alu 1 310 -2 308 258 0 0 chr3 44188549 44188638 -183335940 - L1M4 LINE L1 -2728 3418 3330 458 234 144 30 chr3 44188957 44189124 -183335454 + MER5A DNA MER1_type 4 189 0 311 234 31 32 chr3 44191339 44191462 -183333116 - MIR SINE MIR -65 143 16 1216 147 0 68 chr3 44192532 44192587 -183331991 - MER46A DNA MER2_type -2495 236 179 275 26 51 0 chr3 44192587 44192626 -183331952 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 1216 147 0 68 chr3 44192626 44192821 -183331757 - MER46A DNA MER2_type -2552 179 3 325 194 0 14 chr3 44192827 44192899 -183331679 - MER116 DNA Mariner -2 78 8 364 309 58 7 chr3 44194005 44194144 -183330434 - MIR SINE MIR -88 174 29 2004 133 8 64 chr3 44196769 44197145 -183327433 + THE1A LTR MaLR 1 355 0 301 303 50 0 chr3 44197431 44197530 -183327048 + MIR SINE MIR 2 105 -157 1235 14 50 0 chr3 44197780 44198202 -183326376 + (TAGA)n Simple_repeat Simple_repeat 1 443 0 460 303 58 40 chr3 44198272 44198651 -183325927 - L1MEc LINE L1 -4658 1738 1353 200 204 0 0 chr3 44199742 44199786 -183324792 + GA-rich Low_complexity Low_complexity 3 46 0 22 0 0 0 chr3 44199955 44199977 -183324601 + AT_rich Low_complexity Low_complexity 1 22 0 728 304 110 33 chr3 44200088 44200605 -183323973 + HAL1b LINE L1 95 651 -697 350 267 0 74 chr3 44201272 44201407 -183323171 - MIR SINE MIR -60 202 78 569 362 7 20 chr3 44202835 44203128 -183321450 + L2 LINE L2 2443 2731 -583 2281 246 102 15 chr3 44203132 44203875 -183320703 + L1ME3A LINE L1 5357 6164 -6 451 291 70 35 chr3 44203875 44204102 -183320476 + L2 LINE L2 2732 2966 -348 205 324 84 28 chr3 44204922 44205064 -183319514 + MIR SINE MIR 31 180 -82 392 320 23 8 chr3 44205612 44205740 -183318838 + L1MC/D LINE L1 5507 5636 -2172 2159 152 21 5 chr3 44205776 44206164 -183318414 - L1MB2 LINE L1 -3 6168 5775 261 257 40 0 chr3 44207188 44207262 -183317316 - MIR SINE MIR -77 185 109 194 0 39 0 chr3 44208171 44208197 -183316381 + (TG)n Simple_repeat Simple_repeat 2 28 0 2137 155 32 5 chr3 44208652 44209032 -183315546 - MLT1B LTR MaLR 0 390 1 260 295 78 39 chr3 44209448 44209577 -183315001 + L2 LINE L2 3139 3272 0 189 111 0 0 chr3 44209662 44209689 -183314889 - MIR SINE MIR -10 252 226 194 284 65 52 chr3 44210082 44210237 -183314341 + L2 LINE L2 2900 3056 -257 764 253 56 0 chr3 44210319 44210517 -183314061 - MER3 DNA MER1_type 0 209 1 343 264 103 0 chr3 44211439 44211526 -183313052 - MIR SINE MIR -73 189 94 1518 240 99 81 chr3 44211979 44212563 -183312015 + MLT1G1 LTR MaLR 1 595 0 1186 187 35 92 chr3 44212720 44213200 -183311378 + MER74A LTR ERVL 2 526 -32 24 0 0 0 chr3 44213280 44213304 -183311274 + AT_rich Low_complexity Low_complexity 1 24 0 342 286 56 68 chr3 44213716 44213877 -183310701 + MER115 DNA AcHobo 276 434 -259 254 184 0 0 chr3 44213895 44213933 -183310645 + Zaphod DNA AcHobo 3994 4031 0 1245 248 165 13 chr3 44214439 44214894 -183309684 - MLT1H1 LTR MaLR 0 555 32 1065 167 0 0 chr3 44214949 44215117 -183309461 - AluJ SINE Alu -16 296 129 264 100 67 33 chr3 44215142 44215156 -183309422 - AluJ SINE Alu -168 134 122 207 0 0 0 chr3 44215156 44215179 -183309399 + (TTG)n Simple_repeat Simple_repeat 2 24 0 264 100 67 33 chr3 44215179 44215224 -183309354 - AluJ SINE Alu -180 122 73 370 330 43 0 chr3 44216787 44216902 -183307676 + MIR3 SINE MIR 13 132 -76 471 78 0 0 chr3 44217053 44217117 -183307461 + (TG)n Simple_repeat Simple_repeat 2 65 0 2408 197 63 20 chr3 44217433 44217972 -183306606 + MER68 LTR ERV1 1 562 0 272 331 2 2 chr3 44218573 44218656 -183305922 - MIR SINE MIR -105 103 20 740 97 18 0 chr3 44220503 44220617 -183303961 + (GGAA)n Simple_repeat Simple_repeat 2 117 0 1091 203 50 99 chr3 44221140 44221524 -183303054 + MLT1A1 LTR MaLR 1 365 0 381 271 16 41 chr3 44222258 44222380 -183302198 + MLT1I LTR MaLR 291 409 0 204 289 55 120 chr3 44222389 44222805 -183301773 + L2 LINE L2 2832 3220 -52 332 26 0 0 chr3 44223110 44223148 -183301430 - L1P2 LINE L1 -346 5809 5772 2462 28 7 0 chr3 44223148 44223433 -183301145 + L1PA4 LINE L1 5867 6155 0 416 294 169 0 chr3 44223436 44223572 -183301006 + MER5A DNA MER1_type 31 189 0 384 259 200 7 chr3 44223651 44223786 -183300792 - MIR SINE MIR -49 213 53 297 258 37 65 chr3 44224073 44224266 -183300312 - MIR3 SINE MIR -74 134 3 503 265 102 6 chr3 44224870 44225036 -183299542 + MER91A DNA MER1_type 5 186 -10 1022 290 54 33 chr3 44225114 44225538 -183299040 - LTR16C LTR ERVL 0 491 59 567 261 96 10 chr3 44226399 44226598 -183297980 + MIR SINE MIR 15 230 -32 315 122 0 0 chr3 44226787 44226836 -183297742 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 159 23 0 chr3 44226976 44227020 -183297558 + (CCGGG)n Simple_repeat Simple_repeat 1 45 0 219 182 36 0 chr3 44227008 44227071 -183297507 + (CGG)n Simple_repeat Simple_repeat 1 65 0 445 279 122 37 chr3 44227249 44227531 -183297047 + L2 LINE L2 2725 3024 -248 921 267 78 32 chr3 44227983 44228191 -183296387 + LTR16A LTR ERVL 90 322 -128 1277 166 194 0 chr3 44228191 44228444 -183296134 - AluJb SINE Alu 0 302 1 921 267 78 32 chr3 44228444 44228580 -183295998 + LTR16A LTR ERVL 322 450 0 438 264 70 92 chr3 44228604 44228831 -183295747 + MIR SINE MIR 23 244 -18 504 146 0 31 chr3 44229141 44229237 -183295341 + L1MA8 LINE L1 6199 6291 0 1030 223 49 4 chr3 44229237 44229502 -183295076 + L1ME3A LINE L1 5865 6141 -29 763 210 38 21 chr3 44229811 44229997 -183294581 - MER5A DNA MER1_type 0 189 1 251 312 259 28 chr3 44230161 44230766 -183293812 + L2 LINE L2 1755 2499 -815 215 258 32 148 chr3 44230769 44230859 -183293719 + L2 LINE L2 2918 2984 -288 732 208 0 0 chr3 44230859 44230984 -183293594 - FLAM_A SINE Alu -8 125 1 215 258 32 148 chr3 44230984 44231048 -183293530 + L2 LINE L2 2984 3054 -218 2012 162 109 13 chr3 44231168 44231563 -183293015 + MER83 LTR ERV1 16 448 0 451 248 0 0 chr3 44231607 44231712 -183292866 - L2 LINE L2 -5 3308 3204 227 125 0 0 chr3 44231713 44231745 -183292833 - MER70A LTR ERVL 0 472 441 * 2641 182 46 4 chr3 44231743 44232200 -183292378 - MER70B LTR ERVL -102 476 1 207 279 131 0 chr3 44232222 44232283 -183292295 + L2 LINE L2 3241 3309 -4 986 202 41 58 chr3 44233146 44233389 -183291189 - MIR SINE MIR -7 255 17 319 195 49 37 chr3 44233429 44233511 -183291067 + MER117 DNA MER1_type 65 147 -50 598 164 0 41 chr3 44233550 44233672 -183290906 + MER31B LTR ERV1 1 117 -349 * 645 231 63 111 chr3 44233668 44233815 -183290763 - MLT1I LTR MaLR -6 403 250 2185 117 0 0 chr3 44233815 44234114 -183290464 - AluSx SINE Alu -13 299 1 645 231 63 111 chr3 44234114 44234299 -183290279 - MLT1I LTR MaLR -159 250 87 1441 224 111 8 chr3 44234444 44234806 -183289772 + LTR16A LTR ERVL 52 450 0 1114 162 69 0 chr3 44234908 44235112 -183289466 - MER20 DNA MER1_type -1 218 1 30 27 0 0 chr3 44235402 44235439 -183289139 + AT_rich Low_complexity Low_complexity 1 37 0 1144 221 32 16 chr3 44236068 44236376 -183288202 - Charlie2 DNA MER1_type -7 2855 2543 189 107 0 0 chr3 44236477 44236505 -183288073 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 288 320 21 10 chr3 44237122 44237219 -183287359 + L2 LINE L2 3214 3311 -2 1856 129 0 11 chr3 44238065 44238345 -183286233 + AluSx SINE Alu 23 299 -13 2743 13 0 0 chr3 44243048 44243356 -183281222 + AluYa5 SINE Alu 1 308 -3 361 294 83 61 chr3 44243365 44243593 -183280985 + L1ME LINE L1 4907 5139 -1007 960 226 15 0 chr3 44243690 44243889 -183280689 + MER3 DNA MER1_type 1 202 -7 427 315 74 39 chr3 44243902 44244295 -183280283 + L1ME LINE L1 5268 5686 -476 949 136 28 51 chr3 44245242 44245419 -183279159 - MER90 LTR ERV1 -402 173 1 648 259 35 0 chr3 44245419 44245583 -183278995 - MLT1L LTR MaLR -83 532 363 374 232 314 11 chr3 44245689 44245874 -183278704 - L2 LINE L2 -70 3243 3003 535 263 30 89 chr3 44246232 44246502 -183278076 + MLT1J LTR MaLR 3 256 -255 232 186 0 0 chr3 44246636 44246679 -183277899 + T-rich Low_complexity Low_complexity 1 43 0 1174 124 0 0 chr3 44248921 44249082 -183275496 - AluSp SINE Alu -19 294 134 321 244 35 0 chr3 44249277 44249363 -183275215 + MLT1J LTR MaLR 443 531 -18 329 258 66 101 chr3 44249400 44249598 -183274980 + MLT1J LTR MaLR 271 461 -50 615 317 181 30 chr3 44250547 44251565 -183273013 + L2 LINE L2 1726 2897 -417 25 31 0 0 chr3 44252635 44252667 -183271911 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 44253113 44253135 -183271443 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 268 304 235 10 chr3 44255790 44255994 -183268584 - MIR SINE MIR -12 250 1 1729 260 73 4 chr3 44256016 44256466 -183268112 - MLT1H LTR MaLR -8 541 61 1446 204 21 11 chr3 44256466 44256751 -183267827 + L1MD3 LINE L1 7540 7827 -168 1141 276 37 81 chr3 44256811 44257446 -183267132 - L1M4 LINE L1 -2083 4063 3465 1721 135 0 11 chr3 44257446 44257736 -183266842 + AluSx SINE Alu 33 312 0 1141 276 37 81 chr3 44257736 44257856 -183266722 - L1M4 LINE L1 -2681 3465 3341 3745 116 11 0 chr3 44258305 44258829 -183265749 - L1PB3 LINE L1 -4 6150 5621 500 285 156 73 chr3 44258839 44259288 -183265290 - MLT1H LTR MaLR -50 499 14 28 0 0 0 chr3 44259407 44259435 -183265143 + AT_rich Low_complexity Low_complexity 1 28 0 1127 267 66 24 chr3 44259655 44260123 -183264455 - L1MC/D LINE L1 -2037 5771 5284 1779 188 64 6 chr3 44260135 44260480 -183264098 + MLT1A1 LTR MaLR 1 365 0 2177 112 0 19 chr3 44260483 44260797 -183263781 - AluSq SINE Alu -5 308 1 516 136 0 0 chr3 44261305 44261393 -183263185 + (TG)n Simple_repeat Simple_repeat 2 89 0 2128 32 4 16 chr3 44262097 44262348 -183262230 + L1PA4 LINE L1 5908 6155 0 294 348 36 0 chr3 44262371 44262483 -183262095 - MER102b DNA MER1_type -2 339 224 1012 277 87 30 chr3 44262538 44262931 -183261647 + MLT1J LTR MaLR 97 511 0 644 320 69 0 chr3 44263178 44263425 -183261153 - MER102b DNA MER1_type -51 290 27 370 329 18 45 chr3 44263618 44263840 -183260738 - L2 LINE L2 0 3313 3098 839 227 67 0 chr3 44263853 44264047 -183260531 + L1MEc LINE L1 36 242 -6154 390 275 62 44 chr3 44265702 44265862 -183258716 + L2 LINE L2 3109 3271 -42 2117 87 14 0 chr3 44266917 44267274 -183257304 + AluSx SINE Alu 3 363 0 1812 184 18 18 chr3 44267308 44267640 -183256938 - MLT1A1 LTR MaLR -15 350 19 237 295 63 32 chr3 44267969 44268064 -183256514 + L2 LINE L2 3216 3313 0 738 207 37 11 chr3 44268271 44268459 -183256119 - L1MC4 LINE L1 -139 7903 7711 2262 209 39 39 chr3 44268929 44269494 -183255084 + MER74B LTR ERVL 58 622 0 429 213 64 11 chr3 44269494 44269588 -183254990 + Charlie2 DNA MER1_type 195 293 -2489 9951 41 2 0 chr3 44269588 44270783 -183253795 + L1P LINE L1 3668 4865 -1281 829 157 0 30 chr3 44320937 44321071 -183203507 + FLAM_C SINE Alu 11 140 -3 933 86 0 29 chr3 44323100 44323240 -183201338 + AluSg/x SINE Alu 173 308 -4 180 333 51 0 chr3 44323610 44323688 -183200890 - MIR SINE MIR -77 185 104 1686 222 47 40 chr3 44323976 44324474 -183200104 + L1MB7 LINE L1 5664 6168 -16 2251 119 3 0 chr3 44324519 44324830 -183199748 + AluSx SINE Alu 1 312 0 407 244 109 0 chr3 44325014 44325133 -183199445 + MIR SINE MIR 99 230 -32 234 128 0 0 chr3 44326734 44326773 -183197805 + (TCC)n Simple_repeat Simple_repeat 1 39 0 1149 166 37 0 chr3 44328632 44328819 -183195759 + MER20 DNA MER1_type 1 194 -25 1992 62 12 0 chr3 44329712 44329955 -183194623 - L1PA7 LINE L1 0 6154 5909 514 250 83 13 chr3 44330580 44330736 -183193842 - MIR SINE MIR -28 234 68 2545 67 0 0 chr3 44332145 44332445 -183192133 - AluY SINE Alu -11 300 1 1025 115 28 16 chr3 44332486 44332668 -183191910 + MER53 DNA DNA 6 189 0 22 94 0 0 chr3 44332785 44332849 -183191729 + AT_rich Low_complexity Low_complexity 1 64 0 494 278 147 54 chr3 44333018 44333407 -183191171 + MLT1K LTR MaLR 150 574 -14 322 258 21 11 chr3 44334096 44334192 -183190386 - MIR SINE MIR -74 134 45 22 0 0 0 chr3 44334296 44334318 -183190260 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 44334656 44334683 -183189895 + AT_rich Low_complexity Low_complexity 1 27 0 1750 226 68 86 chr3 44334974 44335456 -183189122 + MLT1H LTR MaLR 12 484 -65 2351 110 0 0 chr3 44335456 44335765 -183188813 - AluSg SINE Alu 0 310 2 1750 226 68 86 chr3 44335765 44335830 -183188748 + MLT1H LTR MaLR 484 549 0 922 132 0 0 chr3 44336030 44336159 -183188419 + AluJ SINE Alu 1 129 -183 207 167 0 0 chr3 44336159 44336201 -183188377 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 1283 127 0 11 chr3 44336201 44336558 -183188020 + AluJ SINE Alu 117 471 0 630 295 88 43 chr3 44336821 44337131 -183187447 - LTR16A1 LTR ERVL -3 479 153 3682 153 40 2 chr3 44338240 44338822 -183185756 + MER6A DNA MER2_type 2 605 0 23 54 0 0 chr3 44339023 44339060 -183185518 + AT_rich Low_complexity Low_complexity 1 37 0 364 255 283 0 chr3 44339556 44339701 -183184877 + MER5A DNA MER1_type 4 189 0 648 235 86 27 chr3 44340161 44340348 -183184230 - MER3 DNA MER1_type 0 209 12 201