730 97 0 0 chr2_random 200002 200095 -1139717 + HERVK9 LTR ERVK 2694 2786 -3130 1984 39 0 0 chr2_random 200095 200325 -1139487 + HERVK9 LTR ERVK 3711 3940 -1976 2015 121 22 19 chr2_random 200326 200648 -1139164 + HERVK9 LTR ERVK 4583 4905 -1011 252 54 54 0 chr2_random 200644 200681 -1139131 - HERVK9 LTR ERVK -115 5801 5763 * 1813 77 0 0 chr2_random 200682 200902 -1138910 + AluY SINE Alu 1 220 -91 2030 133 13 0 chr2_random 201018 201319 -1138493 + AluSp SINE Alu 1 305 -8 322 279 19 19 chr2_random 201713 201817 -1137995 + MER4-int LTR ERV1 2417 2520 -3811 1524 152 0 0 chr2_random 202093 202310 -1137502 - AluSx SINE Alu -95 217 1 198 136 0 0 chr2_random 202310 202354 -1137458 + (TA)n Simple_repeat Simple_repeat 1 44 0 1938 176 0 0 chr2_random 202354 202656 -1137156 - AluSx SINE Alu -10 302 1 728 248 52 29 chr2_random 202656 202866 -1136946 + LTR57-int LTR ERVL 361 575 -4768 1686 170 3 50 chr2_random 202893 203210 -1136602 - AluJb SINE Alu -8 304 3 2341 157 30 9 chr2_random 203220 203684 -1136128 + MER4-int LTR ERV1 1010 1483 -6637 1050 196 9 18 chr2_random 203689 203909 -1135903 - AluJo SINE Alu -23 289 72 1618 117 0 13 chr2_random 204012 204242 -1135570 + AluSq SINE Alu 63 289 -24 592 213 83 82 chr2_random 204256 204834 -1134978 + MER4-int LTR ERV1 1981 3853 -2478 1022 201 79 25 chr2_random 205100 205378 -1134434 + MER4-int LTR ERV1 3729 4021 -2577 290 205 107 45 chr2_random 205365 205423 -1134389 + MER4-int LTR ERV1 4585 4638 -1960 * 1823 187 3 0 chr2_random 205423 205733 -1134079 + AluJb SINE Alu 1 311 -1 290 205 107 45 chr2_random 205733 205786 -1134026 + MER4-int LTR ERV1 4638 4703 -1895 1913 162 7 0 chr2_random 205841 206138 -1133674 - AluSx SINE Alu -13 299 1 1118 149 0 0 chr2_random 206434 206608 -1133204 - AluSp SINE Alu -4 309 136 5965 215 31 33 chr2_random 206617 208232 -1131580 - L1 LINE L1 -1662 4484 2873 563 225 33 26 chr2_random 208223 208374 -1131438 - L1M3 LINE L1 -587 5593 5442 * 255 258 0 15 chr2_random 208361 208427 -1131385 - L1MA8 LINE L1 -75 6216 6152 * 6186 236 64 24 chr2_random 209563 211977 -1127835 - L1M3 LINE L1 -570 5610 3095 571 228 0 0 chr2_random 212539 212640 -1127172 - AluJ/FLAM SINE Alu -210 102 2 1598 206 18 6 chr2_random 212648 212987 -1126825 - L1M3 LINE L1 -361 5822 5480 1308 131 5 15 chr2_random 213148 213346 -1126466 + AluSq SINE Alu 1 196 -117 2107 119 0 7 chr2_random 213561 213854 -1125958 - AluSx SINE Alu -21 291 1 2414 252 55 52 chr2_random 214401 214690 -1125122 - MER21B LTR ERV1 -57 806 519 1667 189 3 10 chr2_random 214690 214981 -1124831 - AluJo SINE Alu -15 297 9 2414 252 55 52 chr2_random 214981 215059 -1124753 - MER21B LTR ERV1 -344 519 443 1235 196 0 104 chr2_random 215059 215386 -1124426 + AluJb SINE Alu 2 294 -18 2414 252 55 52 chr2_random 215386 215803 -1124009 - MER21B LTR ERV1 -420 443 19 1354 225 10 13 chr2_random 215898 216200 -1123612 - AluJo SINE Alu -11 301 1 605 206 15 22 chr2_random 216202 216338 -1123474 - FLAM_C SINE Alu 0 143 9 1521 180 22 61 chr2_random 216341 216703 -1123109 + MLT1D LTR MaLR 150 497 -8 1188 224 31 17 chr2_random 216722 217012 -1122800 + AluJo SINE Alu 11 304 -8 1099 260 104 20 chr2_random 217016 217540 -1122272 - L2 LINE L2 -216 3097 2541 759 192 0 23 chr2_random 217632 217762 -1122050 + FLAM_C SINE Alu 1 127 -6 1035 218 4 8 chr2_random 217826 218065 -1121747 + AluJo SINE Alu 49 286 -26 251 208 9 94 chr2_random 218229 218335 -1121477 + LTR37A LTR ERV1 241 337 -89 1941 159 3 0 chr2_random 218529 218830 -1120982 - AluSg SINE Alu -8 302 1 1505 200 3 23 chr2_random 219133 219433 -1120379 - AluJo SINE Alu -8 304 11 1861 168 0 7 chr2_random 219448 219751 -1120061 - AluSx SINE Alu -6 306 6 297 222 16 0 chr2_random 219771 219834 -1119978 - L1MB8 LINE L1 -5 6173 6110 812 226 0 0 chr2_random 219834 219993 -1119819 + AluJo SINE Alu 1 159 -153 1803 232 58 38 chr2_random 220096 220618 -1119194 - L1MB8 LINE L1 -90 6088 5557 483 269 0 54 chr2_random 220620 220750 -1119062 + FLAM_C SINE Alu 2 124 -19 396 206 14 0 chr2_random 220769 220842 -1118970 - L1MB8 LINE L1 -598 5568 5495 1531 215 3 7 chr2_random 220842 221135 -1118677 - AluJb SINE Alu -20 292 1 24 0 0 0 chr2_random 221388 221412 -1118400 + AT_rich Low_complexity Low_complexity 1 24 0 554 110 44 11 chr2_random 221415 221506 -1118306 - L1PB1 LINE L1 -2 6149 6056 1951 142 7 0 chr2_random 221806 222124 -1117688 - AluSx SINE Alu 0 320 1 3301 248 98 33 chr2_random 223018 223457 -1116355 + L1MC4 LINE L1 2757 3166 -4876 1992 130 7 3 chr2_random 223457 223750 -1116062 + AluSx SINE Alu 1 294 -18 3301 248 98 33 chr2_random 223750 225019 -1114793 + L1MC4 LINE L1 3166 4351 -3691 1615 217 58 0 chr2_random 225019 225364 -1114448 + MER47A DNA MER2_type 1 365 -1 3301 248 98 33 chr2_random 225364 225410 -1114402 + L1MC4 LINE L1 4351 4393 -3649 2204 119 3 3 chr2_random 225410 225722 -1114090 + AluSp SINE Alu 1 312 -1 3301 248 98 33 chr2_random 225722 225969 -1113843 + L1MC4 LINE L1 4393 7678 -364 371 200 40 0 chr2_random 225977 226066 -1113746 + L1ME1 LINE L1 6086 6184 0 26 64 0 0 chr2_random 227014 227061 -1112751 + AT_rich Low_complexity Low_complexity 1 47 0 289 322 91 20 chr2_random 227231 227529 -1112283 - L1ME4a LINE L1 -157 5964 5646 4118 141 6 10 chr2_random 227548 228172 -1111640 - L1PA15 LINE L1 0 6165 5544 2890 189 62 28 chr2_random 228175 228928 -1110884 - LTR1B LTR ERV1 0 785 1 1124 128 59 0 chr2_random 228928 229115 -1110697 - L1PA15 LINE L1 -621 5544 5347 400 134 411 0 chr2_random 229120 229232 -1110580 - LTR1B LTR ERV1 -242 584 427 1431 195 75 0 chr2_random 229232 229580 -1110232 - L1PA15 LINE L1 -809 5337 4964 754 165 46 24 chr2_random 229580 229844 -1109968 - SATR1 Satellite Satellite -109 269 1 3601 179 45 103 chr2_random 229972 230269 -1109543 + LTR49-int LTR ERV1 4330 4643 -1688 1648 191 3 10 chr2_random 230269 230562 -1109250 + AluJb SINE Alu 2 292 -20 3601 179 45 103 chr2_random 230562 231341 -1108471 + LTR49-int LTR ERV1 4643 5318 -1013 612 141 0 0 chr2_random 231344 231436 -1108376 + L1PA7 LINE L1 5 96 -6365 * 14337 104 12 3 chr2_random 231412 236596 -1103216 + L1PA7 LINE L1 1135 6462 -7 2224 136 43 3 chr2_random 236608 236983 -1102829 + LTR49-int LTR ERV1 5307 5696 -635 22 0 0 0 chr2_random 236997 237019 -1102793 + AT_rich Low_complexity Low_complexity 1 22 0 2927 171 46 8 chr2_random 237798 238323 -1101489 + MER52A LTR ERV1 1211 1755 0 8349 154 54 28 chr2_random 238323 238972 -1100840 - L1MA3 LINE L1 -297 6008 5378 1522 201 55 3 chr2_random 238972 239265 -1100547 - AluJb SINE Alu -4 308 1 8349 154 54 28 chr2_random 239265 239693 -1100119 - L1MA3 LINE L1 -927 5378 4963 1959 88 4 11 chr2_random 239693 239953 -1099859 + AluY SINE Alu 39 296 -15 8349 154 54 28 chr2_random 239953 241321 -1098491 - L1MA3 LINE L1 -1342 4963 3381 2090 124 14 0 chr2_random 241321 241612 -1098200 - AluSx SINE Alu -17 295 1 8349 154 54 28 chr2_random 241612 242038 -1097774 - L1MA3 LINE L1 -2924 3381 2968 2415 62 0 20 chr2_random 242038 242343 -1097469 - AluY SINE Alu -12 299 1 789 272 12 0 chr2_random 242471 242721 -1097091 + L1M4 LINE L1 4148 4400 -1746 922 234 40 29 chr2_random 243302 243648 -1096164 - MER66A LTR ERV1 -40 438 89 789 65 0 0 chr2_random 243855 243963 -1095849 + (GGAA)n Simple_repeat Simple_repeat 4 111 0 741 216 33 113 chr2_random 244019 244348 -1095464 + L1MB8 LINE L1 5840 6142 -36 1109 103 4 1 chr2_random 245038 246885 -1092927 - ACRO1 Satellite acromeric 0 1854 1 620 208 0 0 chr2_random 247217 247473 -1092339 - ACRO1 Satellite acromeric 0 256 1 850 181 84 0 chr2_random 247893 248059 -1091753 - MER21B LTR ERV1 -485 378 199 217 211 132 13 chr2_random 248311 248387 -1091425 - MER5A DNA MER1_type -6 183 99 382 87 14 14 chr2_random 248864 248933 -1090879 + (CA)n Simple_repeat Simple_repeat 1 69 0 579 219 2 0 chr2_random 249354 249616 -1090196 + ACRO1 Satellite acromeric 1 262 -31 1119 134 3 1 chr2_random 249940 251496 -1088316 + ACRO1 Satellite acromeric 1 1559 -55 360 180 53 100 chr2_random 252187 252337 -1087475 - L1MB8 LINE L1 -36 6142 6000 1397 137 46 22 chr2_random 252350 255605 -1084207 - GSATII Satellite centromeric -8 3330 1 * 3491 161 9 9 chr2_random 255595 256260 -1083552 + TAR1 Satellite telomeric 1404 2068 -43 300 145 0 36 chr2_random 256400 256483 -1083329 + (TTAGGG)n Simple_repeat Simple_repeat 4 83 0 552 99 6 66 chr2_random 256522 256703 -1083109 + (TTAGGG)n Simple_repeat Simple_repeat 1 170 0 2856 241 11 9 chr2_random 256704 257447 -1082365 - L1 LINE L1 -927 5219 4476 815 211 0 0 chr2_random 257448 257623 -1082189 - AluSp SINE Alu -3 310 136 2455 178 104 15 chr2_random 257814 260465 -1079347 + SATR1 Satellite Satellite 1 2885 -3 1761 206 123 1 chr2_random 260496 260972 -1078840 + SATR1 Satellite Satellite 1 533 -105 223 200 17 0 chr2_random 261138 261198 -1078614 + (TA)n Simple_repeat Simple_repeat 2 62 0 2328 161 119 16 chr2_random 263899 263949 -1075863 - SATR1 Satellite Satellite -46 2350 2307 2418 74 0 0 chr2_random 263949 264247 -1075565 - AluY SINE Alu -13 298 1 2328 161 119 16 chr2_random 264247 266028 -1073784 - SATR1 Satellite Satellite -89 2307 1 1375 182 32 50 chr2_random 266036 266437 -1073375 + MLT2B3 LTR ERVL 176 554 0 36 23 0 0 chr2_random 267318 267361 -1072451 + AT_rich Low_complexity Low_complexity 1 43 0 264 128 51 64 chr2_random 267406 267484 -1072328 - AluJb SINE Alu -185 117 41 23 0 0 0 chr2_random 267799 267822 -1071990 + AT_rich Low_complexity Low_complexity 1 23 0 1192 144 127 50 chr2_random 267977 268276 -1071536 + MER33 DNA MER1_type 1 322 -2 973 143 31 0 chr2_random 270192 270353 -1069459 - MER68 LTR ERV1 -396 166 1 21 57 0 0 chr2_random 270386 270421 -1069391 + AT_rich Low_complexity Low_complexity 1 35 0 33 0 0 0 chr2_random 270755 270788 -1069024 + AT_rich Low_complexity Low_complexity 1 33 0 2039 151 3 6 chr2_random 270907 271219 -1068593 - AluSq SINE Alu -2 311 1 23 0 0 0 chr2_random 271222 271245 -1068567 + AT_rich Low_complexity Low_complexity 1 23 0 2099 139 0 0 chr2_random 271285 271580 -1068232 - AluSx SINE Alu -17 295 1 2536 155 0 41 chr2_random 271589 272027 -1067785 - L1MC1 LINE L1 0 6333 5914 744 179 45 0 chr2_random 273055 273189 -1066623 - Tigger7 DNA MER2_type 0 2487 2348 683 143 52 39 chr2_random 273195 273349 -1066463 + MER21A LTR ERV1 747 902 -29 234 0 0 0 chr2_random 273739 273765 -1066047 + (CAA)n Simple_repeat Simple_repeat 2 27 0 680 219 0 24 chr2_random 273802 273925 -1065887 - FLAM_A SINE Alu -17 125 6 224 312 128 9 chr2_random 274973 275082 -1064730 - MIR SINE MIR -121 141 20 575 232 0 0 chr2_random 277434 277533 -1062279 + FLAM_A SINE Alu 1 99 -43 1889 143 0 31 chr2_random 277786 278101 -1061711 + AluSx SINE Alu 1 306 0 1068 234 30 54 chr2_random 278272 278567 -1061245 - AluJb SINE Alu -12 300 13 6456 52 1 0 chr2_random 278939 279716 -1060096 - L1PA5 LINE L1 -1 6153 5376 1520 206 0 7 chr2_random 280101 280383 -1059429 - AluJb SINE Alu -30 282 3 1261 243 0 24 chr2_random 280421 280713 -1059099 + AluJo SINE Alu 5 289 -23 2355 88 0 0 chr2_random 280908 281202 -1058610 + AluY SINE Alu 1 294 -17 259 171 195 12 chr2_random 282054 282136 -1057676 - MER5A DNA MER1_type -83 106 10 18180 92 15 23 chr2_random 283064 284843 -1054969 - HERVK9 LTR ERVK -3334 2582 768 185 250 0 83 chr2_random 284843 284903 -1054909 - MER5B DNA MER1_type -69 109 55 18180 92 15 23 chr2_random 284903 285666 -1054146 - HERVK9 LTR ERVK -5148 768 1 3327 81 148 5 chr2_random 285666 286113 -1053699 - MER9 LTR ERVK 0 511 1 12870 93 3 1 chr2_random 286114 287796 -1052016 - HERVK14 LTR ERVK -4056 1889 205 634 119 20 0 chr2_random 287790 287891 -1051921 - HERVK14 LTR ERVK -5842 103 1 * 1918 66 0 2 chr2_random 287891 288175 -1051637 - LTR14A LTR ERVK 0 344 1 3021 221 45 18 chr2_random 288180 288516 -1051296 + L1MB1 LINE L1 4060 4385 -1761 198 0 0 0 chr2_random 288516 288538 -1051274 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3021 221 45 18 chr2_random 288538 288974 -1050838 + L1MB1 LINE L1 4385 4853 -1293 791 315 68 10 chr2_random 288979 289287 -1050525 - LTR40a LTR ERVL -192 327 2 919 139 7 0 chr2_random 289587 289738 -1050074 - L1PB1 LINE L1 0 6151 6000 255 116 23 0 chr2_random 290152 290195 -1049617 + MADE1 DNA Mariner 34 77 -3 1830 166 22 130 chr2_random 290458 290957 -1048855 + MER65A LTR ERV1 1 445 0 787 307 109 16 chr2_random 292275 292636 -1047176 - LTR16A LTR ERVL -8 442 44 2167 102 0 0 chr2_random 293321 293637 -1046175 - AluSc SINE Alu 0 323 8 225 143 24 24 chr2_random 294839 294881 -1044931 - MER5B DNA MER1_type -136 42 1 557 266 35 49 chr2_random 295878 296081 -1043731 - L1ME LINE L1 -2011 4069 3870 * 3124 159 55 13 chr2_random 296072 296688 -1043124 + L1MB1 LINE L1 5338 5979 -189 384 200 146 0 chr2_random 296726 296859 -1042953 - L1ME LINE L1 -2477 3603 3454 1517 291 175 17 chr2_random 296974 297584 -1042228 - L1ME LINE L1 -3234 2846 2333 2352 79 7 0 chr2_random 297584 297889 -1041923 - AluY SINE Alu -4 307 1 1517 291 175 17 chr2_random 297889 299262 -1040550 - L1ME LINE L1 -3747 2333 558 1958 52 16 0 chr2_random 301769 302021 -1037791 + L1PA4 LINE L1 5897 6152 -3 26 0 0 0 chr2_random 302170 302196 -1037616 + AT_rich Low_complexity Low_complexity 1 26 0 1819 165 3 75 chr2_random 303939 304314 -1035498 - MER7A DNA MER2_type 0 346 1 423 0 0 0 chr2_random 304811 304858 -1034954 + (TG)n Simple_repeat Simple_repeat 2 48 0 1188 142 0 0 chr2_random 305269 305438 -1034374 - AluY SINE Alu -16 295 127 368 322 112 39 chr2_random 306283 306488 -1033324 + L2 LINE L2 3004 3223 -49 1013 168 58 13 chr2_random 307130 307356 -1032456 + L1MB3 LINE L1 5947 6182 -1 485 317 96 35 chr2_random 307972 308202 -1031610 - MIR SINE MIR -17 245 2 381 333 72 0 chr2_random 308214 308409 -1031403 + MIR SINE MIR 30 238 -24 261 360 112 12 chr2_random 310117 310278 -1029534 + L3 LINE CR1 186 362 -1215 283 326 90 0 chr2_random 310749 310889 -1028923 + MLT1L LTR MaLR 3 155 -460 357 292 108 25 chr2_random 310889 311249 -1028563 - MER20B DNA MER1_type 0 783 394 227 257 0 92 chr2_random 311567 311676 -1028136 + LTR33 LTR ERVL 415 513 -8 591 255 119 17 chr2_random 311684 311919 -1027893 - MER20B DNA MER1_type -406 377 119 2027 154 3 0 chr2_random 312187 312498 -1027314 - AluSx SINE Alu 0 312 1 1655 195 67 3 chr2_random 312601 312945 -1026867 - MER47A DNA MER2_type 0 366 1 182 232 29 0 chr2_random 312945 313014 -1026798 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 267 122 0 0 chr2_random 313019 313068 -1026744 + (TG)n Simple_repeat Simple_repeat 1 49 0 243 341 22 0 chr2_random 313405 313496 -1026316 - L1ME LINE L1 -582 5580 5488 15649 50 1 1 chr2_random 314213 316957 -1022855 - L1PA4 LINE L1 -2 6153 3409 1800 148 0 4 chr2_random 317472 317743 -1022069 + AluSx SINE Alu 31 300 -12 1797 169 3 10 chr2_random 317980 318288 -1021524 - AluSx SINE Alu -6 306 1 318 233 0 0 chr2_random 319629 319689 -1020123 - MER117 DNA MER1_type -40 157 98 3530 62 2 0 chr2_random 319896 320351 -1019461 - L1PA5 LINE L1 -2 6152 5697 22 0 0 0 chr2_random 320660 320682 -1019130 + AT_rich Low_complexity Low_complexity 1 22 0 41557 62 5 1 chr2_random 321711 327835 -1011977 + L1PA4 LINE L1 3 6152 -3 234 345 23 0 chr2_random 328548 328635 -1011177 + L1ME LINE L1 5488 5576 -586 246 116 0 0 chr2_random 328976 329019 -1010793 + (CA)n Simple_repeat Simple_repeat 1 43 0 183 254 0 0 chr2_random 329026 329089 -1010723 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1411 167 84 11 chr2_random 329093 329368 -1010444 + MER47A DNA MER2_type 1 295 -71 320 278 117 33 chr2_random 329777 330137 -1009675 + MER20B DNA MER1_type 394 783 0 244 152 87 0 chr2_random 330137 330179 -1009633 - MLT1L LTR MaLR -460 155 110 238 367 114 13 chr2_random 330750 330908 -1008904 - L3 LINE CR1 -1218 359 186 1019 196 3 2 chr2_random 331179 333894 -1005918 - ALR/Alpha Satellite centromeric 0 2716 1 1042 196 4 3 chr2_random 333906 344166 -995646 - ALR/Alpha Satellite centromeric 0 10275 1 942 191 6 4 chr2_random 344178 346732 -993080 - ALR/Alpha Satellite centromeric 0 2558 1 186 150 0 85 chr2_random 746804 746957 -592855 + (CCCTG)n Simple_repeat Simple_repeat 1 140 0 280 321 44 0 chr2_random 746962 747099 -592713 + (CCCTAG)n Simple_repeat Simple_repeat 6 148 0 713 178 23 39 chr2_random 747530 747646 -592166 + FLAM_C SINE Alu 1 117 -185 198 0 0 0 chr2_random 747646 747668 -592144 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1486 204 50 7 chr2_random 747668 747967 -591845 + AluJo SINE Alu 1 312 0 713 178 23 39 chr2_random 747967 747978 -591834 + FLAM_C SINE Alu 115 127 -175 215 241 0 0 chr2_random 747985 748039 -591773 + A-rich Low_complexity Low_complexity 4 57 0 296 97 136 0 chr2_random 748111 748214 -591598 + (AAATG)n Simple_repeat Simple_repeat 2 118 0 631 108 60 24 chr2_random 748274 748441 -591371 + (AAATG)n Simple_repeat Simple_repeat 5 177 0 642 94 70 35 chr2_random 748458 748629 -591183 + (AAATG)n Simple_repeat Simple_repeat 2 178 0 902 85 73 16 chr2_random 748647 748902 -590910 + (AAATG)n Simple_repeat Simple_repeat 1 269 0 649 89 21 79 chr2_random 748902 749092 -590720 + (AGATG)n Simple_repeat Simple_repeat 1 179 0 292 39 118 0 chr2_random 749096 749147 -590665 + (AAATG)n Simple_repeat Simple_repeat 3 59 0 670 118 65 12 chr2_random 749149 749404 -590408 + (AGATG)n Simple_repeat Simple_repeat 1 268 0 589 89 83 30 chr2_random 749403 749572 -590240 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 * 540 110 64 40 chr2_random 749603 749776 -590036 + (AAATG)n Simple_repeat Simple_repeat 2 178 0 1475 130 202 0 chr2_random 750214 750467 -589345 - AluSg1 SINE Alu -5 304 1 382 212 12 0 chr2_random 750490 750575 -589237 - MIR SINE MIR -106 156 71 2219 114 3 0 chr2_random 750820 751117 -588695 - AluY SINE Alu -13 298 1 279 0 0 0 chr2_random 751144 751175 -588637 + (TC)n Simple_repeat Simple_repeat 2 32 0 229 348 22 0 chr2_random 751175 751267 -588545 + L2 LINE L2 3220 3313 0 1783 164 11 4 chr2_random 751348 751628 -588184 - AluSx SINE Alu -30 282 1 272 363 0 20 chr2_random 751729 751831 -587981 + L2 LINE L2 3141 3240 -32 825 163 22 0 chr2_random 751906 752041 -587771 + MER20 DNA MER1_type 82 219 0 2157 115 0 7 chr2_random 752391 752679 -587133 + AluSx SINE Alu 1 286 -26 1888 109 94 0 chr2_random 752823 753090 -586722 + AluSq SINE Alu 1 292 -21 1382 195 17 66 chr2_random 753646 753804 -586008 - AluJo SINE Alu -25 287 150 2125 128 3 13 chr2_random 753804 754116 -585696 - AluSg SINE Alu -1 309 1 1382 195 17 66 chr2_random 754116 754259 -585553 - AluJo SINE Alu -162 150 1 2361 95 0 0 chr2_random 754267 754562 -585250 - AluSc SINE Alu -14 295 1 1255 236 121 59 chr2_random 754617 755146 -584666 - MER68 LTR ERV1 0 562 1 3118 244 102 42 chr2_random 755366 755687 -584125 - L1MEc LINE L1 -3922 2474 2174 1532 184 37 0 chr2_random 755687 755958 -583854 - AluJo SINE Alu -31 281 1 2403 98 0 0 chr2_random 755966 756273 -583539 - AluSc SINE Alu -2 307 1 3118 244 102 42 chr2_random 756273 757542 -582270 - L1MEc LINE L1 -4228 2168 780 188 226 16 0 chr2_random 758563 758576 -581236 + A-rich Low_complexity Low_complexity 2 13 -51 2341 83 10 13 chr2_random 758576 758888 -580924 + AluSp SINE Alu 1 311 -2 188 226 16 0 chr2_random 758888 758906 -580906 + A-rich Low_complexity Low_complexity 13 29 -35 1585 216 0 16 chr2_random 758906 759221 -580591 + AluJb SINE Alu 1 310 -2 188 226 16 0 chr2_random 759221 759250 -580562 + A-rich Low_complexity Low_complexity 29 64 0 1958 158 0 16 chr2_random 759666 759976 -579836 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr2_random 760388 760412 -579400 + AT_rich Low_complexity Low_complexity 1 24 0 1963 124 13 32 chr2_random 760511 760826 -578986 - AluSc SINE Alu 0 309 1 2685 161 95 6 chr2_random 765926 766472 -573340 + TAR1 Satellite telomeric 1474 2068 -43 429 141 11 54 chr2_random 766637 766822 -572990 + (TTAGGG)n Simple_repeat Simple_repeat 1 177 0 10350 201 37 28 chr2_random 766836 767569 -572243 - L1PBa LINE L1 -927 5935 5210 1153 153 0 0 chr2_random 767569 767745 -572067 - AluSp SINE Alu -2 311 136 10350 201 37 28 chr2_random 767745 770987 -568825 - L1PBa LINE L1 -1652 5210 1707 180 0 0 0 chr2_random 770987 771007 -568805 + (TTA)n Simple_repeat Simple_repeat 2 21 0 10350 201 37 28 chr2_random 771007 771733 -568079 - L1PBa LINE L1 -5155 1707 989 435 210 0 0 chr2_random 773523 773604 -566208 + LTR16B LTR ERVL 116 196 -268 1735 198 16 38 chr2_random 774105 774478 -565334 + MLT1A1 LTR MaLR 1 365 0 260 340 7 7 chr2_random 774818 774965 -564847 - MIR SINE MIR -62 146 9 * 267 250 21 31 chr2_random 774963 775059 -564753 + MIR3 SINE MIR 108 202 -6 254 261 0 34 chr2_random 775695 775783 -564029 - L2 LINE L2 0 3272 3188 439 133 48 24 chr2_random 775827 775910 -563902 + AluJ/FRAM SINE Alu 214 298 -14 377 351 23 0 chr2_random 776303 776474 -563338 + MIR SINE MIR 20 194 -68 469 245 92 92 chr2_random 776675 777036 -562776 + MLT1I LTR MaLR 1 390 -148 282 314 48 8 chr2_random 777007 777131 -562681 + MLT1I LTR MaLR 281 409 0 * 404 279 31 0 chr2_random 777141 777270 -562542 - MIR SINE MIR -14 248 116 672 275 15 5 chr2_random 777624 777824 -561988 + MIR SINE MIR 49 250 -12 255 257 26 105 chr2_random 778319 778397 -561415 + MIR SINE MIR 122 184 -78 2162 99 7 23 chr2_random 778397 778700 -561112 + AluSc SINE Alu 1 298 -11 255 257 26 105 chr2_random 778700 778773 -561039 + MIR SINE MIR 184 261 -1 446 295 27 13 chr2_random 779100 779249 -560563 + MIR SINE MIR 37 187 -75 2197 86 10 36 chr2_random 779252 779556 -560256 + AluSq SINE Alu 1 296 -17 418 235 123 18 chr2_random 780326 780496 -559316 + MIR3 SINE MIR 4 191 -17 1756 69 5 0 chr2_random 780625 780842 -558970 + AluSp SINE Alu 91 308 -5 622 138 11 0 chr2_random 780853 780940 -558872 + 5S rRNA rRNA 3 90 -31 1611 192 0 52 chr2_random 781223 781551 -558261 + AluJo SINE Alu 1 311 -1 1720 249 93 33 chr2_random 781777 782328 -557484 - MLT1E LTR MaLR 0 593 10 568 243 58 94 chr2_random 782335 782611 -557201 - MLT1E-int LTR MaLR 0 1371 1106 189 205 0 0 chr2_random 782678 782717 -557095 - L2 LINE L2 0 3313 3275 333 273 81 10 chr2_random 783143 783242 -556570 - MER5B DNA MER1_type -45 133 28 332 340 48 16 chr2_random 783276 783464 -556348 - MER117 DNA MER1_type -3 194 1 334 327 127 0 chr2_random 783786 783951 -555861 + MIR SINE MIR 53 238 -24 1758 219 35 44 chr2_random 784769 785202 -554610 + L1MC4 LINE L1 6586 7014 -1028 585 212 158 33 chr2_random 785374 785413 -554399 + L1MC4 LINE L1 7014 7047 -948 1803 163 3 10 chr2_random 785413 785713 -554099 + AluJo SINE Alu 1 298 -14 585 212 158 33 chr2_random 785713 786545 -553267 + L1MC4 LINE L1 7047 7995 0 527 205 43 77 chr2_random 786559 786676 -553136 + MLT1F1 LTR MaLR 13 127 -440 271 319 110 2 chr2_random 786775 786882 -552930 - MIR SINE MIR -63 145 30 406 253 72 77 chr2_random 786906 786936 -552876 + MIR SINE MIR 22 51 -211 812 190 107 39 chr2_random 786936 787141 -552671 - MER20 DNA MER1_type 0 219 1 406 253 72 77 chr2_random 787141 787304 -552508 + MIR SINE MIR 51 214 -48 777 267 25 0 chr2_random 787529 787731 -552081 + MIR SINE MIR 13 219 -43 612 294 76 69 chr2_random 787783 788218 -551594 + L2 LINE L2 2843 3280 -33 272 274 0 75 chr2_random 788658 788764 -551048 - MIR3 SINE MIR -48 160 63 270 87 87 0 chr2_random 788934 788980 -550832 - L2 LINE L2 -2 3311 3262 180 0 0 0 chr2_random 790147 790167 -549645 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr2_random 792300 792329 -547483 + GC_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr2_random 792967 792992 -546820 + (C)n Simple_repeat Simple_repeat 1 25 0 1280 133 11 0 chr2_random 793828 794016 -545796 + AluY SINE Alu 119 308 -3 183 80 0 0 chr2_random 794051 794076 -545736 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 6165 172 43 41 chr2_random 794282 794713 -545099 + L1MA9 LINE L1 4038 4467 -1845 2210 105 0 23 chr2_random 794713 795018 -544794 + AluSx SINE Alu 1 298 -14 6165 172 43 41 chr2_random 795018 796346 -543466 + L1MA9 LINE L1 4467 5809 -503 856 213 30 25 chr2_random 796346 796548 -543264 + MER6B DNA MER2_type 4 206 -4 6165 172 43 41 chr2_random 796548 797015 -542797 + L1MA9 LINE L1 5809 6274 -38 256 197 27 115 chr2_random 797127 797189 -542623 + L1ME LINE L1 5670 5736 -426 2591 46 0 3 chr2_random 797189 797491 -542321 + AluY SINE Alu 2 302 -9 256 197 27 115 chr2_random 797491 797597 -542215 + L1ME LINE L1 5736 5826 -336 213 246 0 18 chr2_random 797627 797684 -542128 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 325 317 60 27 chr2_random 798799 798982 -540830 - MIR SINE MIR -2 260 72 2177 102 7 0 chr2_random 800093 800387 -539425 - AluSx SINE Alu -16 296 1 817 304 119 37 chr2_random 800399 800886 -538926 + L2 LINE L2 2579 3127 -186 2276 116 0 0 chr2_random 800886 801187 -538625 - AluSx SINE Alu -11 301 1 817 304 119 37 chr2_random 801187 801379 -538433 + L2 LINE L2 3127 3302 -11 816 173 0 0 chr2_random 801386 801519 -538293 + FLAM_A SINE Alu 1 133 0 1473 201 0 4 chr2_random 801675 801953 -537859 + AluJb SINE Alu 28 304 -8 2104 97 0 10 chr2_random 802896 803186 -536626 + AluY SINE Alu 1 287 -24 24 0 0 0 chr2_random 803557 803581 -536231 + AT_rich Low_complexity Low_complexity 1 24 0 2088 93 0 21 chr2_random 805438 805718 -534094 + AluSc SINE Alu 5 278 -31 225 0 0 0 chr2_random 805727 805752 -534060 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 200 269 19 0 chr2_random 806645 806697 -533115 - L2 LINE L2 -7 3265 3213 645 276 184 33 chr2_random 807249 808141 -531671 + HAL1 LINE L1 1404 2450 -57 2105 132 3 0 chr2_random 808141 808437 -531375 - AluSx SINE Alu -15 297 1 645 276 184 33 chr2_random 808437 808494 -531318 + HAL1 LINE L1 2450 2497 -10 738 252 41 28 chr2_random 808595 808813 -530999 - MER58A DNA MER1_type 0 224 4 340 359 51 8 chr2_random 808946 809183 -530629 + L2 LINE L2 1805 2051 -1263 575 274 122 27 chr2_random 809364 809660 -530152 + L1MEc LINE L1 107 430 -5966 410 267 48 6 chr2_random 809908 810073 -529739 + Charlie1 DNA MER1_type 54 225 -2536 480 181 31 16 chr2_random 810075 810202 -529610 + Charlie1 DNA MER1_type 2627 2755 -6 251 208 0 0 chr2_random 812570 812618 -527194 + MER33 DNA MER1_type 51 98 -226 579 138 23 115 chr2_random 812632 812715 -527097 + MER33 DNA MER1_type 205 265 -2359 1633 120 8 8 chr2_random 812715 812956 -526856 - AluSq SINE Alu -17 296 56 579 138 23 115 chr2_random 812956 813046 -526766 + MER33 DNA MER1_type 265 362 -1 2235 134 0 0 chr2_random 813389 813695 -526117 + AluSx SINE Alu 1 306 -6 2216 84 25 7 chr2_random 813778 814087 -525725 - AluY SINE Alu 0 311 1 339 310 44 32 chr2_random 814176 814334 -525478 + L1MC4a LINE L1 5742 5901 -1907 336 132 66 26 chr2_random 814400 814476 -525336 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr2_random 815110 815131 -524681 + AT_rich Low_complexity Low_complexity 1 21 0 1622 221 55 48 chr2_random 815349 815761 -524051 + L1M4 LINE L1 3076 3484 -2662 1620 139 45 4 chr2_random 815761 816006 -523806 + AluSx SINE Alu 1 255 -57 2243 107 3 28 chr2_random 816006 816325 -523487 + AluSq SINE Alu 3 313 0 1622 221 55 48 chr2_random 816325 816535 -523277 + L1M4 LINE L1 3483 3703 -2443 1595 183 69 7 chr2_random 816537 816827 -522985 + AluJo SINE Alu 5 312 0 690 248 117 28 chr2_random 816842 817200 -522612 + L1ME1 LINE L1 5774 6160 -6 589 212 188 12 chr2_random 818253 818418 -521394 - MIR SINE MIR 0 262 69 854 218 0 0 chr2_random 818618 818774 -521038 - FRAM SINE Alu -20 156 1 2141 114 3 19 chr2_random 819400 819717 -520095 - AluSx SINE Alu 0 312 1 218 337 163 17 chr2_random 821867 822167 -517645 + L2 LINE L2 1179 1522 -1792 918 304 179 27 chr2_random 822239 823012 -516800 + L2 LINE L2 2027 2916 -398 2168 125 0 3 chr2_random 823089 823392 -516420 - AluSx SINE Alu -10 302 1 912 224 35 45 chr2_random 823841 824127 -515685 - MER31B LTR ERV1 -183 283 1 35 24 0 0 chr2_random 824224 824266 -515546 + AT_rich Low_complexity Low_complexity 1 42 0 1011 172 9 39 chr2_random 825359 825591 -514221 + Tigger1 DNA MER2_type 14 238 -2180 631 114 0 0 chr2_random 825592 825680 -514132 + AluY SINE Alu 207 294 -17 506 315 122 31 chr2_random 827881 828265 -511547 + MER20B DNA MER1_type 92 510 -273 210 71 0 0 chr2_random 828269 828297 -511515 + (CA)n Simple_repeat Simple_repeat 2 29 0 756 302 34 29 chr2_random 828331 828741 -511071 - MER92A LTR ERV1 0 412 1 259 232 92 87 chr2_random 829983 830168 -509644 + MIR3 SINE MIR 11 196 -12 * 359 283 50 2 chr2_random 830145 830282 -509530 - MIR SINE MIR -63 145 48 1351 83 25 0 chr2_random 830402 830606 -509206 - THE1-int LTR MaLR -1303 277 69 1194 118 65 0 chr2_random 830606 830775 -509037 - AluSx SINE Alu -132 180 1 340 213 111 9 chr2_random 832314 832422 -507390 - L1M4 LINE L1 -1530 4616 4498 1081 231 140 11 chr2_random 832441 832891 -506921 - L1MC4 LINE L1 -1983 5993 5486 1208 239 113 38 chr2_random 832894 833605 -506207 - L1MC4 LINE L1 -2665 3415 2652 243 290 65 0 chr2_random 833624 833731 -506081 - L1MC4 LINE L1 -5906 164 51 1755 186 10 0 chr2_random 833790 834085 -505727 - AluJb SINE Alu -14 298 1 403 253 47 91 chr2_random 834117 834450 -505362 - L1M4 LINE L1 -2431 3715 3400 2026 167 0 0 chr2_random 834450 834750 -505062 + AluJb SINE Alu 3 302 -10 403 253 47 91 chr2_random 834750 834799 -505013 - L1M4 LINE L1 -2746 3400 3350 2029 147 0 0 chr2_random 834812 835105 -504707 - AluJb SINE Alu -19 293 1 877 215 0 0 chr2_random 835244 835407 -504405 + AluJb SINE Alu 134 296 -16 1624 102 0 0 chr2_random 835533 835749 -504063 - AluSc SINE Alu -6 303 88 280 122 0 0 chr2_random 835751 835792 -504020 - AluSc SINE Alu -262 41 1 486 270 40 13 chr2_random 835825 835977 -503835 + MIR SINE MIR 103 258 -4 435 263 66 0 chr2_random 836388 836525 -503287 + MIR SINE MIR 81 226 -36 745 207 6 18 chr2_random 837559 837728 -502084 - MLT1F1 LTR MaLR -3 564 398 1822 166 0 20 chr2_random 837733 837845 -501967 + AluJo SINE Alu 1 114 -198 2622 139 34 5 chr2_random 837845 838261 -501551 - MSTA LTR MaLR 0 428 1 1822 166 0 20 chr2_random 838261 838450 -501362 + AluJo SINE Alu 114 296 -16 583 162 98 45 chr2_random 838455 838693 -501119 - MLT1F1 LTR MaLR -164 378 78 * 958 261 57 65 chr2_random 838691 839109 -500703 - MER21B LTR ERV1 -434 429 15 313 289 39 0 chr2_random 839177 839281 -500531 - L1ME4a LINE L1 -1 6120 6013 444 221 134 54 chr2_random 840133 840282 -499530 + MER5B DNA MER1_type 15 175 -3 650 173 0 0 chr2_random 840487 840597 -499215 - Tigger3(Golem) DNA MER2_type 0 3029 2920 375 221 39 0 chr2_random 840724 840801 -499011 - Tigger3(Golem) DNA MER2_type -2949 80 1 831 248 84 21 chr2_random 841419 841657 -498155 - MIR SINE MIR -5 257 5 317 297 0 59 chr2_random 841647 841748 -498064 - MIR SINE MIR -64 144 50 * 21 0 0 0 chr2_random 842562 842583 -497229 + AT_rich Low_complexity Low_complexity 1 21 0 2077 102 35 0 chr2_random 843857 843869 -495943 - AluSp SINE Alu -20 293 283 270 0 0 0 chr2_random 843869 843899 -495913 + (TG)n Simple_repeat Simple_repeat 1 30 0 2077 102 35 0 chr2_random 843899 844169 -495643 - AluSp SINE Alu -30 283 1 227 368 26 0 chr2_random 845589 845703 -494109 + Charlie8 DNA MER1_type 6 122 -2295 21 36 0 0 chr2_random 845878 845906 -493906 + AT_rich Low_complexity Low_complexity 1 28 0 209 322 81 11 chr2_random 845933 846020 -493792 - MIR SINE MIR -50 212 120 296 297 18 36 chr2_random 846635 846746 -493066 - MER5A DNA MER1_type -47 142 34 182 378 0 0 chr2_random 847507 847589 -492223 - L2 LINE L2 -318 2954 2873 924 129 0 20 chr2_random 849798 849945 -489867 + AluJb SINE Alu 169 312 0 27 29 0 0 chr2_random 852125 852159 -487653 + AT_rich Low_complexity Low_complexity 1 34 0 49 0 0 0 chr2_random 853129 853178 -486634 + AT_rich Low_complexity Low_complexity 1 49 0 201 74 0 0 chr2_random 854916 854943 -484869 + (CCG)n Simple_repeat Simple_repeat 2 28 0 323 169 0 26 chr2_random 855016 855093 -484719 + (CCG)n Simple_repeat Simple_repeat 3 77 0 229 292 0 0 chr2_random 855310 855358 -484454 + L2 LINE L2 3250 3297 -16 426 256 8 31 chr2_random 856461 856590 -483222 - MIR SINE MIR -65 197 72 307 322 60 35 chr2_random 857160 857359 -482453 - MIR SINE MIR -1 261 58 331 315 107 0 chr2_random 859009 859158 -480654 - MIR SINE MIR -12 250 86 22 80 0 0 chr2_random 860554 860604 -479208 + AT_rich Low_complexity Low_complexity 1 50 0 616 222 238 0 chr2_random 860613 860798 -479014 - MIR SINE MIR -31 231 3 675 319 13 25 chr2_random 860826 861061 -478751 + MIR SINE MIR 31 262 0 685 297 146 11 chr2_random 862305 862710 -477102 - L1MC4 LINE L1 0 8042 7569 369 75 0 0 chr2_random 862710 862763 -477049 + (TG)n Simple_repeat Simple_repeat 2 54 0 685 297 146 11 chr2_random 862763 862808 -477004 - L1MC4 LINE L1 -473 7569 7531 242 250 45 34 chr2_random 862833 862921 -476891 - MIR SINE MIR -70 192 104 324 284 21 15 chr2_random 862993 863106 -476706 - MIR SINE MIR -90 118 1 553 276 16 72 chr2_random 864124 864355 -475457 - MIR SINE MIR -10 252 34 646 284 47 11 chr2_random 864831 865021 -474791 - MIR SINE MIR -19 243 47 714 239 84 56 chr2_random 865194 865445 -474367 - MIR SINE MIR 0 262 5 181 167 0 0 chr2_random 867025 867055 -472757 - MIR SINE MIR -12 250 221 * 182 143 0 122 chr2_random 867030 867079 -472733 - L2 LINE L2 -23 3290 3248 205 250 0 28 chr2_random 867195 867267 -472545 + G-rich Low_complexity Low_complexity 2 71 0 779 180 219 6 chr2_random 867443 867626 -472186 + MIR SINE MIR 12 233 -29 186 246 88 18 chr2_random 867598 867655 -472157 + L2 LINE L2 3210 3270 -2 * 539 209 102 51 chr2_random 867695 867910 -471902 - MER20B DNA MER1_type -19 764 539 684 249 174 8 chr2_random 867963 868216 -471596 - MER20B DNA MER1_type -341 442 148 555 245 185 0 chr2_random 868842 868993 -470819 - MER5A DNA MER1_type -8 181 3 191 291 141 39 chr2_random 869048 869254 -470558 + L2 LINE L2 2857 3083 -189 588 216 223 0 chr2_random 869888 870036 -469776 - MER5A DNA MER1_type 0 189 9 346 311 37 22 chr2_random 870126 870261 -469551 - MIR SINE MIR -3 259 123 210 91 0 0 chr2_random 871730 871763 -468049 + (T)n Simple_repeat Simple_repeat 1 33 0 280 277 12 60 chr2_random 872127 872210 -467602 - L2 LINE L2 0 3272 3194 345 347 33 0 chr2_random 872216 872337 -467475 + L2 LINE L2 3147 3271 -1 340 268 151 57 chr2_random 872510 872809 -467003 - L2 LINE L2 -352 2962 2636 553 270 270 4 chr2_random 873961 874239 -465573 - L3 LINE CR1 -89 1488 1137 304 336 25 16 chr2_random 875246 875368 -464444 + MIR3 SINE MIR 34 156 -52 376 272 34 61 chr2_random 875784 875931 -463881 + MER91B DNA MER1_type 16 158 -32 198 222 0 0 chr2_random 876462 876498 -463314 - L3 LINE CR1 -116 1461 1426 194 119 83 0 chr2_random 876922 877006 -462806 + (TA)n Simple_repeat Simple_repeat 2 92 0 2022 39 0 0 chr2_random 877020 877253 -462559 - L1PA5 LINE L1 -13 6141 5909 346 222 121 0 chr2_random 877253 877346 -462466 - L3 LINE CR1 -895 682 578 2271 105 3 6 chr2_random 879507 879820 -459992 - AluSq SINE Alu -1 312 1 213 300 14 0 chr2_random 880861 880931 -458881 - MIR SINE MIR -154 108 38 195 241 48 24 chr2_random 881741 881824 -457988 - L2 LINE L2 -343 2971 2887 227 286 16 0 chr2_random 882137 882200 -457612 + MIR SINE MIR 76 139 -69 1076 142 0 0 chr2_random 882353 882365 -457447 - AluSc SINE Alu -17 292 281 653 23 23 0 chr2_random 882365 882451 -457361 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 1076 142 0 0 chr2_random 882451 882593 -457219 - AluSc SINE Alu -27 282 138 459 0 0 0 chr2_random 882599 882650 -457162 + (TG)n Simple_repeat Simple_repeat 2 52 0 2079 123 0 0 chr2_random 882654 882930 -456882 - AluSg SINE Alu -30 280 5 796 306 173 16 chr2_random 883397 884066 -455746 - L2 LINE L2 -494 2820 2047 1150 166 50 8 chr2_random 884154 884395 -455417 - L1MA4A LINE L1 0 6303 6053 2127 117 0 0 chr2_random 884396 884714 -455098 + AluSx SINE Alu 1 318 0 1607 182 3 24 chr2_random 885080 885202 -454610 + AluJb SINE Alu 20 143 -169 2215 132 0 0 chr2_random 885202 885505 -454307 + AluSq SINE Alu 1 303 -10 1607 182 3 24 chr2_random 885505 885673 -454139 + AluJb SINE Alu 143 304 -8 45 0 0 0 chr2_random 886096 886141 -453671 + AT_rich Low_complexity Low_complexity 1 45 0 771 183 8 0 chr2_random 886149 886280 -453532 + FLAM_A SINE Alu 1 132 -1 264 302 170 0 chr2_random 887370 887529 -452283 - L2 LINE L2 -166 3106 2921 2222 96 38 0 chr2_random 887851 888143 -451669 + AluSx SINE Alu 1 303 -9 619 144 126 9 chr2_random 888154 888265 -451547 + AluJo SINE Alu 2 125 -187 2310 85 6 31 chr2_random 888360 888679 -451133 + AluY SINE Alu 1 311 0 467 136 80 23 chr2_random 888681 888769 -451043 + AluJo SINE Alu 130 222 -90 11660 51 5 3 chr2_random 888769 891007 -448805 + L1PA4 LINE L1 3932 6155 0 359 336 78 39 chr2_random 891015 891298 -448514 + L1MDa LINE L1 1445 1738 -4802 252 285 22 29 chr2_random 891347 891484 -448328 + L1MDa LINE L1 1658 1793 -4747 22 70 0 0 chr2_random 891705 891748 -448064 + AT_rich Low_complexity Low_complexity 1 43 0 326 202 36 36 chr2_random 891879 891963 -447849 + L1MDa LINE L1 2655 2738 -3802 347 246 31 23 chr2_random 892133 892263 -447549 + L1MEc LINE L1 55 185 -6211 1099 328 80 50 chr2_random 892401 893309 -446503 + L1MEc LINE L1 360 1295 -5101 752 137 30 0 chr2_random 893356 893487 -446325 - MSTB1 LTR MaLR -297 135 1 205 157 0 29 chr2_random 894980 895050 -444762 + (TA)n Simple_repeat Simple_repeat 1 68 0 1441 179 87 56 chr2_random 895084 895465 -444347 - LTR49 LTR ERV1 -168 427 31 2016 137 4 0 chr2_random 895465 895743 -444069 + AluSq SINE Alu 14 292 -21 1441 179 87 56 chr2_random 895743 895775 -444037 - LTR49 LTR ERV1 -564 31 1 32 26 0 0 chr2_random 896226 896265 -443547 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr2_random 896469 896501 -443311 + AT_rich Low_complexity Low_complexity 1 32 0 482 219 142 11 chr2_random 896759 896942 -442870 + MER20 DNA MER1_type 10 216 -3 1703 172 56 23 chr2_random 897082 897513 -442299 - LTR56 LTR ERV1 0 445 1 2130 183 100 11 chr2_random 897701 898243 -441569 - LTR49 LTR ERV1 -5 590 1 25 19 5 0 chr2_random 898807 898867 -440945 + AT_rich Low_complexity Low_complexity 1 32 0 233 164 0 18 chr2_random 899018 899073 -440739 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 229 303 16 0 chr2_random 899083 899205 -440607 + (TA)n Simple_repeat Simple_repeat 2 125 0 26 0 0 0 chr2_random 899290 899316 -440496 + AT_rich Low_complexity Low_complexity 1 26 0 1260 248 46 12 chr2_random 900120 900536 -439276 - MER54A LTR ERVL 0 901 472 2059 118 74 15 chr2_random 900574 900912 -438900 - THE1B LTR MaLR 0 364 7 1483 216 51 2 chr2_random 900921 901314 -438498 - MER54A LTR ERVL -489 412 1 1560 203 0 20 chr2_random 902492 902797 -437015 - AluJb SINE Alu -3 309 11 1069 266 39 72 chr2_random 903790 904034 -435778 - MLT1D LTR MaLR -2 503 283 2203 123 7 0 chr2_random 904034 904343 -435469 - AluY SINE Alu 0 311 1 1069 266 39 72 chr2_random 904343 904614 -435198 - MLT1D LTR MaLR -222 283 5 21 0 0 0 chr2_random 904675 904696 -435116 + AT_rich Low_complexity Low_complexity 1 21 0 605 219 8 13 chr2_random 904740 905338 -434474 + GA-rich Low_complexity Low_complexity 1 595 0 765 257 65 16 chr2_random 905440 905810 -434002 - L1MCa LINE L1 -3509 2917 2530 391 298 83 39 chr2_random 905830 906035 -433777 - L1MCa LINE L1 -4960 1466 1253 1317 225 4 4 chr2_random 906277 906557 -433255 - MLT1A1 LTR MaLR 0 365 86 317 350 28 0 chr2_random 906980 907123 -432689 - L1MC/D LINE L1 -768 5474 5328 1093 229 164 34 chr2_random 907392 907838 -431974 - L1MB5 LINE L1 -9 6165 5662 440 281 34 36 chr2_random 907839 908163 -431649 + L1M4c LINE L1 1518 1864 -4544 2188 99 0 0 chr2_random 908218 908501 -431311 + AluY SINE Alu 1 283 -28 22 0 0 0 chr2_random 908867 908889 -430923 + AT_rich Low_complexity Low_complexity 1 22 0 496 268 97 17 chr2_random 908953 909310 -430502 + L1M4c LINE L1 2310 2694 -3688 1710 210 106 12 chr2_random 909313 909737 -430075 + MLT1C LTR MaLR 4 467 0 265 284 105 19 chr2_random 909825 909987 -429825 + L1M4 LINE L1 43 218 -6324 338 296 16 0 chr2_random 910306 910431 -429381 + L1M4 LINE L1 801 927 -5719 1392 235 87 24 chr2_random 910619 911308 -428504 + L1M4 LINE L1 824 1530 -5022 276 260 20 14 chr2_random 911337 911483 -428329 + CT-rich Low_complexity Low_complexity 1 147 0 21 36 0 0 chr2_random 911775 911803 -428009 + AT_rich Low_complexity Low_complexity 1 28 0 463 329 89 38 chr2_random 912241 912588 -427224 - L2 LINE L2 -499 2815 2451 457 314 42 11 chr2_random 913901 914092 -425720 + HERVL LTR ERVL 2267 2463 -3191 3317 162 54 40 chr2_random 917201 918050 -421762 + MER4D LTR ERV1 1 465 0 396 0 0 0 chr2_random 918128 918172 -421640 + (GA)n Simple_repeat Simple_repeat 1 44 0 641 274 123 42 chr2_random 918277 918682 -421130 + MLT1D LTR MaLR 68 505 0 267 304 51 51 chr2_random 919042 919180 -420632 - MIR3 SINE MIR -62 146 9 2747 33 21 3 chr2_random 919471 919807 -420005 + L1PA5 LINE L1 5805 6146 -8 1376 234 104 13 chr2_random 920122 920575 -419237 - MLT1D LTR MaLR 0 505 12 395 309 116 10 chr2_random 920986 921297 -418515 - LTR16C LTR ERVL -38 453 110 2650 106 46 25 chr2_random 924367 924752 -415060 + MLT2A1 LTR ERVL 1 397 -47 513 0 0 0 chr2_random 924752 924809 -415003 + (TA)n Simple_repeat Simple_repeat 1 57 0 2650 106 46 25 chr2_random 924809 924858 -414954 + MLT2A1 LTR ERVL 397 444 0 1686 126 0 0 chr2_random 924858 925121 -414691 + HERVL-A1 LTR ERVL 1 263 -5391 * 3319 111 2 2 chr2_random 925110 925606 -414206 + HERVL-A1 LTR ERVL 1317 1812 -3842 * 13719 105 11 3 chr2_random 925604 928047 -411765 + HERVL-A1 LTR ERVL 3165 5654 0 2616 99 8 3 chr2_random 928047 928431 -411381 + MLT2A1 LTR ERVL 1 386 -58 297 164 0 0 chr2_random 928431 928486 -411326 - MLT2A1 LTR ERVL 0 453 399 222 37 0 0 chr2_random 928493 928520 -411292 + (CA)n Simple_repeat Simple_repeat 2 28 0 2134 101 112 6 chr2_random 928523 928888 -410924 - MLT2A1 LTR ERVL -40 404 1 369 75 0 60 chr2_random 928888 928954 -410858 + MLT2A1 LTR ERVL 382 443 -1 683 250 0 0 chr2_random 929226 929366 -410446 + AluJb SINE Alu 140 279 -33 314 209 12 12 chr2_random 929393 929479 -410333 + LTR49 LTR ERV1 500 585 -10 2221 110 3 10 chr2_random 929483 929791 -410021 + AluSp SINE Alu 8 313 0 581 374 104 19 chr2_random 930489 931431 -408381 + L2 LINE L2 2060 3086 -186 274 164 0 0 chr2_random 931551 931606 -408206 + Alu SINE Alu 238 292 -8 228 186 254 34 chr2_random 931756 931815 -407997 + MER5A DNA MER1_type 31 102 -87 30 0 0 0 chr2_random 931815 931845 -407967 + AT_rich Low_complexity Low_complexity 1 30 0 2198 135 0 0 chr2_random 931936 932239 -407573 - AluSx SINE Alu -9 303 1 21 0 0 0 chr2_random 932350 932371 -407441 + AT_rich Low_complexity Low_complexity 1 21 0 4351 124 61 7 chr2_random 932372 933114 -406698 - L1MA5A LINE L1 -4 6293 5512 580 143 92 25 chr2_random 933114 933233 -406579 + AluSg/x SINE Alu 166 292 -18 5916 164 23 4 chr2_random 933234 934602 -405210 - L1MA5A LINE L1 -743 5403 4126 1701 171 0 14 chr2_random 934845 935138 -404674 + AluJb SINE Alu 1 289 -23 1451 71 91 0 chr2_random 935217 935415 -404397 + L1PA7 LINE L1 5931 6146 -8 533 240 39 39 chr2_random 935845 936049 -403763 + L1M4 LINE L1 4834 5037 -1109 691 183 58 22 chr2_random 936061 936226 -403586 + FRAM SINE Alu 1 43 0 776 218 22 97 chr2_random 936231 936552 -403260 + L1M4 LINE L1 5032 5328 -818 252 169 51 0 chr2_random 936548 936607 -403205 + L1MD2 LINE L1 6275 6336 -23 * 21 0 0 0 chr2_random 936698 936719 -403093 + AT_rich Low_complexity Low_complexity 1 21 0 433 289 40 44 chr2_random 938196 938421 -401391 + HAL1b LINE L1 693 916 -432 397 287 91 39 chr2_random 938618 938872 -400940 + L1MEc LINE L1 2136 2402 -3994 450 0 0 0 chr2_random 939905 939955 -399857 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr2_random 939982 940003 -399809 + AT_rich Low_complexity Low_complexity 1 21 0 776 241 0 0 chr2_random 940007 940169 -399643 - AluJb SINE Alu -14 298 137 31 26 0 0 chr2_random 940285 940323 -399489 + AT_rich Low_complexity Low_complexity 1 38 0 1333 199 21 53 chr2_random 940638 940931 -398881 + L1MA4 LINE L1 4774 5013 -1133 1580 52 0 62 chr2_random 940931 941141 -398671 + AluY SINE Alu 5 201 -110 1333 199 21 53 chr2_random 941141 941445 -398367 + L1MA4 LINE L1 5013 5325 -821 646 200 0 62 chr2_random 941445 941472 -398340 + FRAM SINE Alu 33 60 -252 2458 58 7 7 chr2_random 941472 941781 -398031 - AluY SINE Alu -2 309 1 646 200 0 62 chr2_random 941781 941883 -397929 + FRAM SINE Alu 60 154 -22 3641 170 4 40 chr2_random 941884 942644 -397168 + L1MA4 LINE L1 5290 6022 -278 26 64 0 0 chr2_random 942698 942745 -397067 + AT_rich Low_complexity Low_complexity 1 47 0 1324 260 88 55 chr2_random 942790 943391 -396421 - MLT1E2 LTR MaLR 0 626 6 305 299 24 79 chr2_random 943608 943772 -396040 - L2 LINE L2 -1 3312 3158 2288 74 10 0 chr2_random 944253 944533 -395279 + AluY SINE Alu 1 286 -25 184 42 0 0 chr2_random 944533 944557 -395255 + (TAAAA)n Simple_repeat Simple_repeat 2 170 0 2288 74 10 0 chr2_random 944557 944573 -395239 + AluY SINE Alu 286 300 -11 761 226 57 14 chr2_random 944743 944988 -394824 - L1M3 LINE L1 -370 5796 5570 378 230 26 62 chr2_random 945571 945684 -394128 - MLT1D LTR MaLR -392 113 5 253 219 55 41 chr2_random 946668 946741 -393071 + MIR SINE MIR 49 122 -86 782 249 57 84 chr2_random 947108 947441 -392371 - MLT1J LTR MaLR -109 402 79 956 199 103 85 chr2_random 947685 948062 -391750 - MLT1B LTR MaLR 0 390 7 237 220 20 0 chr2_random 950644 950694 -389118 + L1MB5 LINE L1 5723 5773 -398 718 197 158 37 chr2_random 950724 950882 -388930 + L1MB5 LINE L1 5838 5976 -198 1786 145 16 29 chr2_random 950882 951193 -388619 - AluJo SINE Alu -5 307 1 718 197 158 37 chr2_random 951193 951306 -388506 + L1MB5 LINE L1 5976 6165 -9 250 161 56 19 chr2_random 951310 951472 -388340 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 707 213 0 0 chr2_random 951483 951605 -388207 - FLAM_A SINE Alu -10 123 2 375 191 42 36 chr2_random 951606 951774 -388038 + (TAGA)n Simple_repeat Simple_repeat 3 171 0 239 93 23 0 chr2_random 951775 951818 -387994 + (ATTG)n Simple_repeat Simple_repeat 3 46 0 26 30 0 0 chr2_random 952564 952597 -387215 + AT_rich Low_complexity Low_complexity 1 33 0 1816 126 19 0 chr2_random 952608 952869 -386943 + AluSx SINE Alu 1 266 -46 1639 178 51 0 chr2_random 953068 953360 -386452 + AluSx SINE Alu 1 307 -5 428 230 41 111 chr2_random 953394 953609 -386203 + L1M4 LINE L1 2663 2843 -3303 883 119 0 24 chr2_random 953609 953735 -386077 + FLAM_C SINE Alu 1 123 -10 428 230 41 111 chr2_random 953735 953888 -385924 + L1M4 LINE L1 2843 3005 -3141 2126 126 0 13 chr2_random 953907 954217 -385595 + AluSq SINE Alu 1 306 -7 305 325 85 37 chr2_random 954321 954509 -385303 + L1PBa LINE L1 760 956 -2267 416 195 0 0 chr2_random 954533 954610 -385202 + MLT1B LTR MaLR 243 319 -71 254 323 73 10 chr2_random 954936 955032 -384780 + L2 LINE L2 3128 3229 -43 188 330 22 33 chr2_random 955362 955453 -384359 + L2 LINE L2 3183 3272 0 1091 62 0 0 chr2_random 955462 955590 -384222 + AluY SINE Alu 1 128 -183 2914 199 24 2 chr2_random 956179 956916 -382896 + L1PBa LINE L1 989 1928 -4935 6267 95 12 50 chr2_random 956922 958164 -381648 + SVA Other Other 433 1386 0 11763 202 30 72 chr2_random 958176 961348 -378464 + L1PBa LINE L1 1953 5170 -1692 1099 156 0 11 chr2_random 961348 961527 -378285 + AluSp SINE Alu 136 312 -1 11763 202 30 72 chr2_random 961527 962262 -377550 + L1PBa LINE L1 5170 5935 -927 593 77 6 71 chr2_random 962262 962432 -377380 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 283 140 0 54 chr2_random 962462 962555 -377257 + (CCCTAA)n Simple_repeat Simple_repeat 2 89 0 2026 160 52 20 chr2_random 962699 963125 -376687 - TAR1 Satellite telomeric -416 439 1 26 0 0 0 chr2_random 963464 963490 -376322 + AT_rich Low_complexity Low_complexity 1 26 0 1837 178 3 13 chr2_random 963818 964133 -375679 - AluSx SINE Alu 0 312 1 1036 192 28 90 chr2_random 965491 965746 -374066 + MER8 DNA MER2_type 1 239 0 490 207 0 72 chr2_random 965869 965980 -373832 + FLAM_A SINE Alu 1 103 -39 184 273 26 39 chr2_random 966210 966287 -373525 - MIR SINE MIR 0 262 187 1728 167 10 10 chr2_random 967773 968067 -371745 + AluJb SINE Alu 1 294 -18 1721 161 3 7 chr2_random 969283 969568 -370244 - AluJo SINE Alu -26 286 3 2032 141 3 13 chr2_random 970223 970527 -369285 + AluSx SINE Alu 11 311 -1 289 296 127 59 chr2_random 970567 970848 -368964 + L1 LINE L1 3371 3631 -2515 1847 126 105 0 chr2_random 970848 971125 -368687 + AluSx SINE Alu 1 306 -6 289 296 127 59 chr2_random 971125 971731 -368081 + L1 LINE L1 3631 4319 -1827 344 289 243 20 chr2_random 971772 971881 -367931 + L1 LINE L1 4383 4466 -1680 1295 179 137 0 chr2_random 971881 971997 -367815 + AluJb SINE Alu 1 100 -212 207 0 0 0 chr2_random 971997 972020 -367792 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1295 179 137 0 chr2_random 972020 972165 -367647 + AluJb SINE Alu 100 298 -14 344 289 243 20 chr2_random 972165 972359 -367453 + L1 LINE L1 4466 4754 -1392 267 288 0 0 chr2_random 972868 972927 -366885 - L2 LINE L2 -1391 1923 1865 2234 188 38 26 chr2_random 973092 973593 -366219 + LTR55 LTR ERV 5 511 -37 635 268 219 11 chr2_random 973635 974109 -365703 + L1M4 LINE L1 2435 3007 -3139 320 294 46 20 chr2_random 974109 974262 -365550 + ERVL LTR ERVL 2573 2729 -2925 968 329 39 57 chr2_random 974406 974888 -364924 + ERVL LTR ERVL 3006 3513 -2070 1872 136 65 44 chr2_random 974888 975255 -364557 - THE1C LTR MaLR 0 375 1 968 329 39 57 chr2_random 975255 975424 -364388 + ERVL LTR ERVL 3513 3683 -1900 8392 143 35 8 chr2_random 975517 977911 -361901 + L1MA8 LINE L1 3820 6287 -4 2272 84 7 23 chr2_random 977950 978258 -361554 + AluY SINE Alu 1 303 -8 1534 319 48 39 chr2_random 978261 979102 -360710 + ERVL LTR ERVL 3756 4603 -882 358 242 83 0 chr2_random 980050 980175 -359637 + MIR3 SINE MIR 63 201 -7 3533 151 30 43 chr2_random 980279 980947 -358865 + L1MC2 LINE L1 5679 6337 -7 245 281 46 19 chr2_random 980950 981339 -358473 + L1MC4 LINE L1 7241 7572 -470 2258 110 0 3 chr2_random 981339 981647 -358165 + AluSc SINE Alu 1 307 -2 245 281 46 19 chr2_random 981647 981751 -358061 + L1MC4 LINE L1 7572 7672 -370 254 111 0 0 chr2_random 981795 981831 -357981 - Tigger3(Golem) DNA MER2_type -74 2955 2920 1992 128 18 0 chr2_random 981841 982123 -357689 - AluSx SINE Alu -25 287 1 315 238 12 12 chr2_random 982261 982341 -357471 - Tigger3(Golem) DNA MER2_type -2949 80 1 398 301 144 4 chr2_random 982406 982635 -357177 + L1MC4 LINE L1 7782 8042 0 2407 148 40 10 chr2_random 983459 983859 -355953 - MER61B LTR ERV1 -13 412 1 1973 123 14 0 chr2_random 985860 986191 -353621 - AluY SINE Alu 0 335 1 54 40 0 0 chr2_random 986244 986319 -353493 + AT_rich Low_complexity Low_complexity 1 75 0 26 23 0 23 chr2_random 986551 986573 -353239 + AT_rich Low_complexity Low_complexity 1 22 -21 2224 114 7 0 chr2_random 986573 986871 -352941 - AluSg SINE Alu -10 300 1 26 23 0 23 chr2_random 986871 986892 -352920 + AT_rich Low_complexity Low_complexity 22 43 0 24 32 0 0 chr2_random 987621 987652 -352160 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr2_random 988085 988112 -351700 + AT_rich Low_complexity Low_complexity 1 27 0 443 326 116 5 chr2_random 988938 989153 -350659 + MIR SINE MIR 5 243 -19 319 319 0 0 chr2_random 989756 989850 -349962 - MIR SINE MIR -22 240 147 24 32 0 0 chr2_random 990081 990112 -349700 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr2_random 990442 990472 -349340 + AT_rich Low_complexity Low_complexity 1 30 0 625 299 54 18 chr2_random 990505 990729 -349083 - MIR SINE MIR -14 248 17 272 257 35 106 chr2_random 990952 991065 -348747 - L2 LINE L2 -30 3242 3138 1884 161 3 10 chr2_random 991181 991492 -348320 - AluJb SINE Alu -3 309 1 1635 202 0 19 chr2_random 991696 991834 -347978 + AluJo SINE Alu 1 140 -172 2199 114 7 13 chr2_random 991834 992142 -347670 + AluSx SINE Alu 1 306 -6 1635 202 0 19 chr2_random 992142 992315 -347497 + AluJo SINE Alu 140 306 -6 917 155 0 0 chr2_random 992335 992483 -347329 - AluSg/x SINE Alu -1 309 162 25 0 0 0 chr2_random 993043 993068 -346744 + AT_rich Low_complexity Low_complexity 1 25 0 2007 143 3 0 chr2_random 993069 993355 -346457 - AluSx SINE Alu -25 287 1 31 76 0 0 chr2_random 993575 993641 -346171 + AT_rich Low_complexity Low_complexity 1 66 0 1488 199 30 17 chr2_random 993844 994145 -345667 - AluJo SINE Alu -7 305 1 28 71 0 0 chr2_random 994161 994217 -345595 + AT_rich Low_complexity Low_complexity 1 56 0 228 269 8 25 chr2_random 995115 995234 -344578 + L1M4 LINE L1 4590 4706 -1440 183 232 0 0 chr2_random 995464 995520 -344292 + (TA)n Simple_repeat Simple_repeat 1 56 0 220 228 18 18 chr2_random 995576 995633 -344179 + (TATG)n Simple_repeat Simple_repeat 2 58 0 317 277 76 112 chr2_random 995638 995952 -343860 + L1M4 LINE L1 4960 5262 -884 364 258 153 73 chr2_random 995968 996304 -343508 + L1M1 LINE L1 5281 5589 -542 812 158 0 15 chr2_random 996304 996437 -343375 + FLAM_C SINE Alu 2 132 -1 364 258 153 73 chr2_random 996437 996468 -343344 + L1M1 LINE L1 5589 5616 -515 2082 115 0 0 chr2_random 996468 996746 -343066 + AluSq SINE Alu 22 299 -14 364 258 153 73 chr2_random 996746 996847 -342965 + L1M1 LINE L1 5616 5779 -352 2124 122 0 25 chr2_random 996919 997240 -342572 - AluSq SINE Alu 0 313 1 26 93 0 0 chr2_random 997261 997336 -342476 + AT_rich Low_complexity Low_complexity 1 75 0 21 57 0 0 chr2_random 997728 997763 -342049 + AT_rich Low_complexity Low_complexity 1 35 0 1946 158 0 0 chr2_random 998977 999275 -340537 + AluSx SINE Alu 3 300 -12 30 0 0 0 chr2_random 999545 999575 -340237 + AT_rich Low_complexity Low_complexity 1 30 0 1332 162 109 8 chr2_random 999722 999988 -339824 + AluJo SINE Alu 1 293 -19 308 294 85 43 chr2_random 1000018 1000229 -339583 + L1 LINE L1 173 392 -5921 4655 238 69 28 chr2_random 1000546 1001002 -338810 + L1 LINE L1 798 1234 -5148 3082 178 15 70 chr2_random 1001002 1001733 -338079 - LTR8 LTR ERV1 0 691 1 4655 238 69 28 chr2_random 1001733 1002489 -337323 + L1 LINE L1 1234 1958 -4424 1681 180 48 7 chr2_random 1002489 1002784 -337028 - AluJo SINE Alu -5 307 1 4655 238 69 28 chr2_random 1002784 1003936 -335876 + L1 LINE L1 1958 3131 -3251 1760 220 25 120 chr2_random 1003936 1004521 -335291 + MLT2B3 LTR ERVL 1 486 -34 322 159 0 5 chr2_random 1004558 1004626 -335186 + MLT2B2 LTR ERVL 455 515 0 1734 236 72 12 chr2_random 1004628 1004879 -334933 + L1 LINE L1 3129 3363 -3019 1938 121 11 4 chr2_random 1004879 1005189 -334623 + AluSp SINE Alu 1 312 0 1734 236 72 12 chr2_random 1005189 1005516 -334296 + L1 LINE L1 3363 3743 -2639 455 184 85 57 chr2_random 1005518 1005613 -334199 + L1 LINE L1 5468 5570 -812 1546 207 42 8 chr2_random 1005613 1005966 -333846 + MLT1A1 LTR MaLR 1 365 0 455 184 85 57 chr2_random 1005966 1006011 -333801 + L1 LINE L1 5570 5612 -770 2509 157 43 2 chr2_random 1006022 1006531 -333281 - THE1-int LTR MaLR -755 887 346 37346 91 9 6 chr2_random 1006536 1012660 -327152 + L1PA5 LINE L1 11 6151 -3 13171 63 8 1 chr2_random 1012810 1015328 -324484 + L1PA6 LINE L1 3606 6153 -1 2268 141 4 0 chr2_random 1015330 1015698 -324114 - THE1-int LTR MaLR -1210 370 1 1944 163 30 43 chr2_random 1015698 1016260 -323552 - MLT2A2 LTR ERVL 0 554 1 406 289 52 6 chr2_random 1016352 1016495 -323317 + MIR SINE MIR 3 148 -60 1925 145 7 3 chr2_random 1016611 1016907 -322905 - AluSx SINE Alu -15 297 1 372 276 174 33 chr2_random 1017120 1017512 -322300 + L1ME LINE L1 5283 5729 -392 1866 119 61 14 chr2_random 1017512 1017789 -322023 - AluSx SINE Alu -22 290 1 29 0 0 0 chr2_random 1017789 1017818 -321994 + AT_rich Low_complexity Low_complexity 1 29 0 2326 89 0 7 chr2_random 1018025 1018328 -321484 + AluY SINE Alu 1 301 -10 366 57 100 0 chr2_random 1018384 1018454 -321358 + GA-rich Low_complexity Low_complexity 4 80 0 465 230 149 81 chr2_random 1020191 1020500 -319312 + LTR16A1 LTR ERVL 1 330 -127 218 179 0 0 chr2_random 1020500 1020539 -319273 - MER5B DNA MER1_type 0 178 140 837 214 284 11 chr2_random 1020540 1020825 -318987 - MLT1F LTR MaLR 0 542 180 24 53 0 0 chr2_random 1020892 1020930 -318882 + AT_rich Low_complexity Low_complexity 1 38 0 1020 154 0 0 chr2_random 1020995 1021151 -318661 - AluSq SINE Alu -157 156 1 294 225 75 25 chr2_random 1021152 1021272 -318540 + L1M4 LINE L1 4533 4658 -1488 350 319 109 42 chr2_random 1021331 1021595 -318217 + L1M4 LINE L1 4747 5057 -1089 1469 152 144 0 chr2_random 1021595 1021852 -317960 + AluSg SINE Alu 1 294 -16 350 319 109 42 chr2_random 1021852 1022001 -317811 + L1M4 LINE L1 5057 5195 -951 588 285 58 34 chr2_random 1022210 1022536 -317276 + L1M4 LINE L1 5293 5626 -495 248 224 69 43 chr2_random 1022607 1022723 -317089 + L1M4 LINE L1 5768 5886 -288 6967 235 30 17 chr2_random 1022916 1024167 -315645 + L1P5 LINE L1 1188 2421 -4376 2089 131 3 0 chr2_random 1024167 1024464 -315348 - AluSg SINE Alu -12 298 1 6967 235 30 17 chr2_random 1024464 1024491 -315321 + L1P5 LINE L1 2421 2446 -4351 2260 111 3 0 chr2_random 1024491 1024798 -315014 + AluSc SINE Alu 1 308 -1 6967 235 30 17 chr2_random 1024798 1026347 -313465 + L1P5 LINE L1 2446 4057 -2740 42100 39 21 1 chr2_random 1026348 1032379 -307433 + L1PA2 LINE L1 1 6155 0 1329 197 8 53 chr2_random 1032376 1032732 -307080 + L1 LINE L1 3387 3726 -2420 * 3550 163 9 2 chr2_random 1032735 1033909 -305903 + L1P5 LINE L1 5264 6442 -360 265 261 23 0 chr2_random 1033904 1033992 -305820 + L1MC4 LINE L1 6614 6703 -1339 * 910 164 190 1 chr2_random 1034019 1034061 -305751 + L1PA15 LINE L1 5674 5707 -458 2398 101 3 41 chr2_random 1034061 1034448 -305364 + L1PB1 LINE L1 5777 6148 -3 910 164 190 1 chr2_random 1034448 1034737 -305075 + L1PA15 LINE L1 5707 6165 0 215 282 159 46 chr2_random 1034877 1035072 -304740 - L2 LINE L2 -1377 1937 1721 225 94 0 0 chr2_random 1035137 1035169 -304643 + (TA)n Simple_repeat Simple_repeat 2 33 0 30 27 0 0 chr2_random 1035826 1035863 -303949 + AT_rich Low_complexity Low_complexity 1 37 0 1112 138 0 6 chr2_random 1036401 1036584 -303228 - AluSg/x SINE Alu 0 307 126 267 360 175 21 chr2_random 1037073 1037398 -302414 - L2 LINE L2 -416 2898 2524 1458 170 89 0 chr2_random 1037491 1037750 -302062 - AluJo SINE Alu -30 282 1 3237 135 22 6 chr2_random 1037782 1038315 -301497 - MER6 DNA MER2_type 0 865 324 840 186 149 14 chr2_random 1038357 1038449 -301363 + L1 LINE L1 3586 3664 -2482 384 22 0 0 chr2_random 1038449 1038494 -301318 + (CA)n Simple_repeat Simple_repeat 1 45 0 840 186 149 14 chr2_random 1038494 1038622 -301190 + L1 LINE L1 3664 3836 -2310 1847 128 62 3 chr2_random 1038625 1038930 -300882 + L1PA16 LINE L1 5663 5985 -181 670 100 10 0 chr2_random 1038938 1039038 -300774 + AluSg/x SINE Alu 207 307 -3 1185 286 71 80 chr2_random 1039618 1039759 -300053 + L1MEd LINE L1 265 406 -5713 2099 115 0 3 chr2_random 1039759 1040082 -299730 + AluSq SINE Alu 1 322 0 1185 286 71 80 chr2_random 1040082 1040939 -298873 + L1MEd LINE L1 406 1256 -4863 595 364 53 20 chr2_random 1040944 1041301 -298511 + HAL1 LINE L1 1373 1741 -766 228 221 26 39 chr2_random 1041480 1041557 -298255 + L1M4 LINE L1 85 160 -6382 2461 102 8 6 chr2_random 1041618 1041972 -297840 + THE1A LTR MaLR 1 355 0 760 95 0 0 chr2_random 1042246 1042351 -297461 + L1PA8 LINE L1 6066 6170 -2 816 119 13 13 chr2_random 1042356 1042507 -297305 + (GAAA)n Simple_repeat Simple_repeat 4 154 0 1862 184 50 14 chr2_random 1042546 1042910 -296902 + MER68 LTR ERV1 116 492 -70 198 0 0 0 chr2_random 1043213 1043235 -296577 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2462 264 95 14 chr2_random 1043306 1044359 -295453 + L1M4 LINE L1 959 2096 -4550 201 74 0 0 chr2_random 1044361 1044388 -295424 + (TG)n Simple_repeat Simple_repeat 2 28 0 462 226 0 32 chr2_random 1044568 1044661 -295151 + FLAM_A SINE Alu 23 112 -30 840 112 0 0 chr2_random 1044661 1044777 -295035 + MSTA LTR MaLR 1 116 -312 1119 86 7 0 chr2_random 1044785 1044925 -294887 - AluSp SINE Alu -172 141 1 213 39 0 0 chr2_random 1045440 1045466 -294346 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 211 100 0 60 chr2_random 1045489 1045539 -294273 + (TTTCC)n Simple_repeat Simple_repeat 4 50 0 738 65 9 37 chr2_random 1045612 1045720 -294092 - L1PA7 LINE L1 0 6154 6050 4026 243 60 28 chr2_random 1047671 1049079 -290733 + L1M4 LINE L1 3451 4903 -1741 1805 178 96 63 chr2_random 1049080 1049508 -290304 - MSTB2 LTR MaLR 0 457 16 4875 216 56 107 chr2_random 1049512 1049676 -290136 - MSTB2-int LTR MaLR 0 1651 1480 180 0 0 0 chr2_random 1049676 1049696 -290116 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 4875 216 56 107 chr2_random 1049696 1051270 -288542 - MSTB2-int LTR MaLR -171 1480 1 1914 191 90 17 chr2_random 1051270 1051683 -288129 - MSTB2 LTR MaLR 0 457 15 2697 218 64 12 chr2_random 1051685 1052447 -287365 + L1M4 LINE L1 4899 5700 -944 8504 150 57 23 chr2_random 1052457 1053937 -285875 + L1P LINE L1 11 1541 -4605 * 15643 45 43 1 chr2_random 1053934 1055900 -283912 - L1P LINE L1 -1043 5103 3055 16650 73 1 6 chr2_random 1055900 1058142 -281670 + L1P LINE L1 1630 3859 -2287 1037 162 45 0 chr2_random 1058148 1058327 -281485 - AluSq SINE Alu -126 187 1 658 291 20 12 chr2_random 1058328 1058572 -281240 + L1ME1 LINE L1 5916 6161 -5 1439 276 118 31 chr2_random 1058824 1059744 -280068 + L1MDa LINE L1 2450 3288 -3252 2212 106 0 3 chr2_random 1059744 1060037 -279775 + AluSx SINE Alu 5 296 -16 1439 276 118 31 chr2_random 1060037 1060743 -279069 + L1MDa LINE L1 3288 4217 -2323 1371 209 16 39 chr2_random 1060771 1061082 -278730 - AluJo SINE Alu -7 305 2 329 352 0 9 chr2_random 1061105 1061210 -278602 + LTR67 LTR ERVL 49 152 -405 441 0 0 0 chr2_random 1061331 1061380 -278432 + (TA)n Simple_repeat Simple_repeat 2 50 0 1783 129 12 4 chr2_random 1061384 1061639 -278173 - AluSx SINE Alu -55 257 1 363 333 66 41 chr2_random 1061649 1061967 -277845 - L2 LINE L2 -1072 2242 1917 1495 131 5 0 chr2_random 1062843 1063057 -276755 - AluSg/x SINE Alu -11 299 85 1889 156 61 19 chr2_random 1063629 1063989 -275823 - THE1C LTR MaLR 0 375 1 853 225 0 0 chr2_random 1064996 1065169 -274643 - FRAM SINE Alu -9 167 1 2099 144 3 0 chr2_random 1065211 1065516 -274296 - AluSq SINE Alu -7 306 1 496 111 0 14 chr2_random 1065727 1065799 -274013 - AluS SINE Alu -239 73 3 334 194 24 24 chr2_random 1065799 1065923 -273889 + CT-rich Low_complexity Low_complexity 4 127 0 1456 181 32 43 chr2_random 1065923 1066064 -273748 - AluJo SINE Alu -34 278 140 2195 123 3 0 chr2_random 1066064 1066366 -273446 - AluSx SINE Alu -8 304 2 1456 181 32 43 chr2_random 1066366 1066505 -273307 - AluJo SINE Alu -172 140 1 1966 163 0 0 chr2_random 1068160 1068454 -271358 - AluSx SINE Alu -18 294 1 1959 156 0 3 chr2_random 1069139 1069440 -270372 - AluSx SINE Alu -12 300 1 623 268 75 55 chr2_random 1069728 1069982 -269830 - MER46C DNA MER2_type 0 338 80 410 344 18 12 chr2_random 1070104 1070267 -269545 - MIR SINE MIR -79 183 20 2241 113 10 6 chr2_random 1070648 1070959 -268853 - AluSq SINE Alu 0 313 2 2062 190 52 42 chr2_random 1071015 1071179 -268633 + MLT1D LTR MaLR 3 164 -341 2138 104 14 10 chr2_random 1071179 1071476 -268336 - AluSq SINE Alu -15 298 1 2062 190 52 42 chr2_random 1071476 1071538 -268274 + MLT1D LTR MaLR 164 224 -281 2044 160 64 8 chr2_random 1071538 1071913 -267899 - MSTD LTR MaLR 0 396 1 2062 190 52 42 chr2_random 1071913 1072180 -267632 + MLT1D LTR MaLR 224 502 -3 2105 125 17 0 chr2_random 1072307 1072595 -267217 + AluSx SINE Alu 1 293 -19 269 321 28 0 chr2_random 1072791 1072897 -266915 + MIR SINE MIR 57 165 -97 1098 251 141 33 chr2_random 1073251 1073705 -266107 + MLT1K LTR MaLR 2 504 -84 2201 116 0 7 chr2_random 1073795 1074088 -265724 + AluSg SINE Alu 1 291 -19 19733 30 0 2 chr2_random 1074089 1077205 -262607 + L1PA3 LINE L1 3042 6155 0 2033 166 73 15 chr2_random 1077552 1077802 -262010 + Tigger3b DNA MER2_type 1 286 -2742 1917 160 0 0 chr2_random 1077802 1078095 -261717 - AluSx SINE Alu -19 293 1 2033 166 73 15 chr2_random 1078095 1078253 -261559 + Tigger3b DNA MER2_type 286 433 -798 1967 111 0 4 chr2_random 1078254 1078515 -261297 - AluSx SINE Alu -51 261 2 2473 140 90 19 chr2_random 1078515 1079002 -260810 + Tigger3b DNA MER2_type 708 1229 -3 208 349 18 36 chr2_random 1079034 1079200 -260612 - MIR SINE MIR -88 174 12 2156 65 27 3 chr2_random 1079308 1079600 -260212 + AluY SINE Alu 1 299 -12 210 136 0 0 chr2_random 1080436 1080480 -259332 + (TG)n Simple_repeat Simple_repeat 2 45 0 281 342 9 18 chr2_random 1081020 1081134 -258678 + L2 LINE L2 3192 3304 -9 1223 195 35 52 chr2_random 1081335 1081622 -258190 + AluJo SINE Alu 1 282 -30 2146 139 0 3 chr2_random 1081893 1082203 -257609 - AluSx SINE Alu -3 309 1 1729 139 45 17 chr2_random 1082206 1082493 -257319 - AluSx SINE Alu -17 295 1 246 62 0 0 chr2_random 1082643 1082675 -257137 + (TA)n Simple_repeat Simple_repeat 2 33 0 2065 142 0 3 chr2_random 1082675 1082970 -256842 - AluSx SINE Alu -18 294 1 615 205 0 47 chr2_random 1082979 1083106 -256706 - FLAM_A SINE Alu -12 121 1 2494 198 38 13 chr2_random 1083323 1083874 -255938 - L1MB7 LINE L1 -21 6163 5599 987 158 0 24 chr2_random 1083874 1084038 -255774 - AluJo SINE Alu -147 165 6 637 84 0 0 chr2_random 1084069 1084152 -255660 - AluJb SINE Alu -20 292 210 4501 217 62 12 chr2_random 1084158 1085349 -254463 - L1MB7 LINE L1 -2111 4035 2785 808 267 108 38 chr2_random 1085476 1085829 -253983 + HSREP522 Satellite telomeric 1 377 -24 202 197 0 54 chr2_random 1086624 1086771 -253041 + (CCCTG)n Simple_repeat Simple_repeat 4 142 0 299 239 6 57 chr2_random 1086878 1087054 -252758 + (CCCTG)n Simple_repeat Simple_repeat 5 171 0 190 143 41 0 chr2_random 1087120 1087169 -252643 + (CCCTAG)n Simple_repeat Simple_repeat 2 52 0 285 222 0 91 chr2_random 1087238 1087436 -252376 + (CCCTG)n Simple_repeat Simple_repeat 1 180 0 * 370 270 53 0 chr2_random 1087387 1087539 -252273 + (CCCTAG)n Simple_repeat Simple_repeat 1 160 0 190 111 0 44 chr2_random 1087595 1087640 -252172 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 234 202 21 88 chr2_random 1087665 1087858 -251954 + (CCCTG)n Simple_repeat Simple_repeat 1 180 0 218 208 6 87 chr2_random 1087985 1088158 -251654 + (CCCTG)n Simple_repeat Simple_repeat 3 161 0 * 278 153 0 134 chr2_random 1088105 1088307 -251505 + (GCCTG)n Simple_repeat Simple_repeat 5 179 0 334 323 37 0 chr2_random 1088327 1088491 -251321 + (CCCTAG)n Simple_repeat Simple_repeat 3 172 0 460 168 5 84 chr2_random 1088532 1088722 -251090 + (CCCTG)n Simple_repeat Simple_repeat 2 176 0 293 197 0 96 chr2_random 1088761 1088959 -250853 + (CCCTG)n Simple_repeat Simple_repeat 1 179 0 339 296 42 0 chr2_random 1089143 1089285 -250527 + (CTAGGG)n Simple_repeat Simple_repeat 6 153 0 350 264 16 77 chr2_random 1089412 1089594 -250218 - MIR SINE MIR 0 262 92 745 127 8 17 chr2_random 1089596 1089714 -250098 + AluSq/x SINE Alu 17 133 -180 418 223 3 68 chr2_random 1089852 1090223 -249589 + (CCCTG)n Simple_repeat Simple_repeat 1 346 0 216 270 40 0 chr2_random 1090190 1090264 -249548 + (CCCTAG)n Simple_repeat Simple_repeat 6 82 0 * 249 97 0 48 chr2_random 1090294 1090356 -249456 + (CCCTG)n Simple_repeat Simple_repeat 1 59 0 376 206 0 79 chr2_random 1090453 1090691 -249121 + (CCCTG)n Simple_repeat Simple_repeat 1 219 0 657 88 86 31 chr2_random 1091191 1091516 -248296 + (AAATG)n Simple_repeat Simple_repeat 1 342 0 * 767 97 79 0 chr2_random 1091478 1091643 -248169 + (AGATG)n Simple_repeat Simple_repeat 2 179 0 471 168 60 22 chr2_random 1091671 1091983 -247829 + (AGATG)n Simple_repeat Simple_repeat 1 323 0 513 154 62 6 chr2_random 1091983 1092145 -247667 + (AAATG)n Simple_repeat Simple_repeat 3 173 0 663 95 59 31 chr2_random 1092165 1092388 -247424 + (AAATG)n Simple_repeat Simple_repeat 1 229 0 218 119 48 0 chr2_random 1092400 1092442 -247370 + (AAATG)n Simple_repeat Simple_repeat 5 48 0 27 29 0 0 chr2_random 1092495 1092529 -247283 + AT_rich Low_complexity Low_complexity 1 34 0 2626 213 30 23 chr2_random 1093168 1093877 -245935 - L1 LINE L1 -1549 4597 3884 3363 182 3 14 chr2_random 1093879 1094538 -245274 + L1MA5 LINE L1 5642 6293 -7 212 329 0 0 chr2_random 1094851 1094924 -244888 + MIR SINE MIR 182 254 -8 1987 156 0 0 chr2_random 1095094 1095389 -244423 - AluSx SINE Alu -17 295 1 633 200 11 113 chr2_random 1095762 1095947 -243865 + FRAM SINE Alu 1 166 -10 276 308 22 0 chr2_random 1097972 1098063 -241749 + L2 LINE L2 3216 3308 -5 6120 45 0 4 chr2_random 1098825 1099575 -240237 - L1PA5 LINE L1 0 6154 5408 770 275 15 20 chr2_random 1100315 1100638 -239174 + MER34C LTR ERV1 63 427 -158 2200 121 0 3 chr2_random 1101552 1101857 -237955 - AluSq SINE Alu -9 304 1 256 298 113 24 chr2_random 1102471 1102595 -237217 - L2 LINE L2 -6 3307 3173 1437 194 108 10 chr2_random 1103304 1103618 -236194 - MER2 DNA MER2_type 0 345 1 408 279 114 47 chr2_random 1103876 1104281 -235531 - L1ME4a LINE L1 0 6121 5690 331 189 14 40 chr2_random 1104334 1104408 -235404 + L2 LINE L2 3241 3312 -1 948 179 0 28 chr2_random 1106079 1106258 -233554 + AluJo SINE Alu 1 174 -138 319 85 0 0 chr2_random 1106260 1106307 -233505 - FRAM/FAM SINE Alu -78 88 42 1218 273 44 2 chr2_random 1106316 1106744 -233068 - L1ME4a LINE L1 -469 5701 5256 2337 100 10 0 chr2_random 1107004 1107314 -232498 - AluSq SINE Alu 0 313 1 222 132 55 11 chr2_random 1107503 1107594 -232218 + (TA)n Simple_repeat Simple_repeat 2 96 0 180 0 0 0 chr2_random 1108506 1108526 -231286 + (CA)n Simple_repeat Simple_repeat 2 21 0 1605 174 37 23 chr2_random 1108567 1108866 -230946 + AluJb SINE Alu 1 303 -9 673 60 10 10 chr2_random 1108874 1108974 -230838 + (GGAA)n Simple_repeat Simple_repeat 2 101 0 251 276 92 11 chr2_random 1109023 1109110 -230702 + MLT1L LTR MaLR 105 198 -417 432 130 294 0 chr2_random 1109209 1109301 -230511 + MSTA LTR MaLR 286 404 -24 180 0 0 0 chr2_random 1110159 1110179 -229633 + (T)n Simple_repeat Simple_repeat 1 20 0 669 164 192 7 chr2_random 1110179 1110325 -229487 + MSTA LTR MaLR 256 428 0 343 169 0 78 chr2_random 1111111 1111188 -228624 + MER115 DNA AcHobo 509 579 -114 374 252 41 0 chr2_random 1111230 1111353 -228459 + MER115 DNA AcHobo 558 685 -8 327 104 0 0 chr2_random 1111732 1111780 -228032 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 53 0 0 chr2_random 1111872 1111910 -227902 + AT_rich Low_complexity Low_complexity 1 38 0 627 240 0 8 chr2_random 1111952 1112073 -227739 + FLAM_A SINE Alu 1 120 -13 1493 203 3 29 chr2_random 1112184 1112499 -227313 + AluJb SINE Alu 1 307 -5 22 56 0 0 chr2_random 1112537 1112573 -227239 + AT_rich Low_complexity Low_complexity 1 36 0 730 225 119 30 chr2_random 1112601 1112904 -226908 + LTR48 LTR ERV1 409 786 -1 227 219 12 12 chr2_random 1113021 1113103 -226709 + A-rich Low_complexity Low_complexity 1 82 0 2113 84 43 3 chr2_random 1113130 1113429 -226383 + AluY SINE Alu 1 311 0 1419 196 60 20 chr2_random 1113429 1113830 -225982 + L1MC/D LINE L1 5181 5604 -743 1584 124 35 11 chr2_random 1113831 1114114 -225698 + AluY SINE Alu 1 290 -21 365 200 0 0 chr2_random 1164143 1164203 -175609 + AluS SINE Alu 232 291 -10 253 43 65 0 chr2_random 1164208 1164254 -175558 + GA-rich Low_complexity Low_complexity 4 52 0 1680 184 3 10 chr2_random 1164308 1164618 -175194 - AluJb SINE Alu -4 308 1 720 191 23 0 chr2_random 1164618 1164749 -175063 - AluJo SINE Alu -177 135 2 27 62 0 0 chr2_random 1164814 1164862 -174950 + AT_rich Low_complexity Low_complexity 1 48 0 5926 74 15 30 chr2_random 1164895 1165784 -174028 - SVA Other Other -4 1382 508 198 0 0 0 chr2_random 1166056 1166078 -173734 + (TC)n Simple_repeat Simple_repeat 2 23 0 1954 147 3 0 chr2_random 1166131 1166437 -173375 - AluJo SINE Alu -5 307 1 6712 58 10 32 chr2_random 1166616 1167581 -172231 - SVA Other Other -5 1381 438 1340 96 9 60 chr2_random 1167603 1167938 -171874 - SVA Other Other -520 866 549 5068 86 33 10 chr2_random 1167956 1168747 -171065 - SVA Other Other -520 866 58 915 10 0 0 chr2_random 1168747 1168851 -170961 + (GGGAGA)n Simple_repeat Simple_repeat 2 105 0 476 292 52 13 chr2_random 1168862 1169016 -170796 + L2 LINE L2 3154 3313 0 409 214 54 27 chr2_random 1169093 1169205 -170607 + MLT1I LTR MaLR 277 391 -18 259 303 13 20 chr2_random 1169553 1169705 -170107 + CT-rich Low_complexity Low_complexity 2 152 0 225 319 58 22 chr2_random 1170278 1170416 -169396 - Charlie4 DNA MER1_type -4 1957 1815 180 77 0 0 chr2_random 1170609 1170635 -169177 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3300 123 29 4 chr2_random 1171024 1171510 -168302 + MER41E LTR ERV1 15 512 0 294 354 62 4 chr2_random 1171543 1171786 -168026 + HAL1 LINE L1 440 696 -1811 2988 135 53 44 chr2_random 1171802 1172372 -167440 - LTR8A LTR ERV1 0 727 153 2252 112 9 18 chr2_random 1172381 1172721 -167091 - MER1B DNA MER1_type -2 337 1 616 184 41 54 chr2_random 1172724 1172871 -166941 - LTR8 LTR ERV1 -545 146 2 711 184 91 75 chr2_random 1172885 1173201 -166611 - MER31B LTR ERV1 -21 445 1 772 145 57 19 chr2_random 1173219 1173378 -166434 - MER89 LTR ERV1 -2 557 393 336 24 0 0 chr2_random 1173737 1173778 -166034 + (TA)n Simple_repeat Simple_repeat 1 41 0 226 306 61 20 chr2_random 1173853 1174000 -165812 + HAL1b LINE L1 1189 1341 -7 2094 230 29 88 chr2_random 1174427 1175145 -164667 - LTR8 LTR ERV1 0 691 16 663 281 43 47 chr2_random 1175201 1175436 -164376 + MIR SINE MIR 2 235 -27 1044 241 33 83 chr2_random 1175851 1176271 -163541 - MER39 LTR ERV1 0 707 309 366 274 89 16 chr2_random 1176259 1176383 -163429 - MER39 LTR ERV1 -574 133 1 * 806 146 91 36 chr2_random 1176456 1176621 -163191 + AluSq SINE Alu 1 174 -139 638 50 0 0 chr2_random 1176699 1176779 -163033 - HY3 scRNA scRNA -1 100 21 1535 0 0 0 chr2_random 1178873 1179037 -160775 + U1 snRNA snRNA 1 164 -1 295 182 76 30 chr2_random 1179479 1179545 -160267 - MER45B DNA AcHobo -660 380 312 320 259 93 14 chr2_random 1179548 1179687 -160125 + REP3 LTR ERV 4 153 -409 2182 41 52 7 chr2_random 1180032 1180323 -159489 - AluY SINE Alu -6 305 2 1651 113 28 0 chr2_random 1180476 1180544 -159268 + AluSx SINE Alu 59 124 -188 237 33 0 0 chr2_random 1180544 1180574 -159238 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 1651 113 28 0 chr2_random 1180574 1180752 -159060 + AluSx SINE Alu 124 312 0 255 31 0 0 chr2_random 1180944 1180976 -158836 + (TC)n Simple_repeat Simple_repeat 1 32 0 204 217 0 0 chr2_random 1182038 1182054 -157758 + A-rich Low_complexity Low_complexity 1 16 -30 1267 171 96 68 chr2_random 1182054 1182347 -157465 + AluJb SINE Alu 2 302 0 204 217 0 0 chr2_random 1182347 1182376 -157436 + A-rich Low_complexity Low_complexity 15 46 0 637 160 0 0 chr2_random 1182426 1182532 -157280 + FLAM_A SINE Alu 18 123 -19 513 226 20 0 chr2_random 1182537 1182639 -157173 + FRAM SINE Alu 40 143 -33 1824 145 10 0 chr2_random 1182683 1182979 -156833 - AluSx SINE Alu -13 299 1 25 31 0 0 chr2_random 1183151 1183183 -156629 + AT_rich Low_complexity Low_complexity 1 32 0 2100 107 0 0 chr2_random 1183199 1183523 -156289 - AluSg SINE Alu 0 324 1 806 55 147 0 chr2_random 1183592 1183701 -156111 + AluSg SINE Alu 1 125 -185 1540 154 33 46 chr2_random 1183803 1184288 -155524 - AluSx SINE Alu 0 312 3 2466 167 41 0 chr2_random 1184785 1185228 -154584 - LOR1b LTR ERV1 0 461 1 599 143 0 0 chr2_random 1185228 1185319 -154493 - LOR1b-int LTR ERV1 0 8120 8030 * 1870 102 8 4 chr2_random 1185318 1185583 -154229 - LOR1-int LTR ERV1 -2056 6064 5799 * 6378 128 58 19 chr2_random 1185569 1185837 -153975 - LOR1-int LTR ERV1 -1014 5584 5328 180 0 0 0 chr2_random 1185837 1185857 -153955 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6378 128 58 19 chr2_random 1185857 1186881 -152931 - LOR1-int LTR ERV1 -1270 5328 4288 566 188 0 0 chr2_random 1186881 1186977 -152835 + AluJb SINE Alu 38 133 -179 366 183 0 0 chr2_random 1186977 1187048 -152764 + GA-rich Low_complexity Low_complexity 2 72 0 350 174 0 14 chr2_random 1187048 1187117 -152695 - LOR1-int LTR ERV1 -4058 4062 3995 6700 99 9 20 chr2_random 1187166 1187742 -152070 - LOR1-int LTR ERV1 -4136 3984 3422 1637 176 0 29 chr2_random 1187742 1188054 -151758 - AluSx SINE Alu -9 303 1 6700 99 9 20 chr2_random 1188054 1188465 -151347 - LOR1-int LTR ERV1 -4698 3422 3008 1247 279 34 34 chr2_random 1188793 1188977 -150835 - L1MCc LINE L1 -5948 475 292 2150 69 7 3 chr2_random 1188977 1189266 -150546 + AluY SINE Alu 21 310 -1 1247 279 34 34 chr2_random 1189266 1189526 -150286 - L1MCc LINE L1 -6130 293 31 619 272 15 25 chr2_random 1190388 1190590 -149222 - MLT1B LTR MaLR -1 389 190 351 0 0 0 chr2_random 1191074 1191113 -148699 + (TA)n Simple_repeat Simple_repeat 2 40 0 239 293 138 18 chr2_random 1191151 1191318 -148494 - HAL1b LINE L1 -191 1157 971 2052 96 4 4 chr2_random 1191359 1191692 -148120 - AluSc SINE Alu 0 333 1 2018 113 3 28 chr2_random 1191695 1192015 -147797 - AluSx SINE Alu 0 312 1 259 257 123 28 chr2_random 1192075 1192459 -147353 - L1MB5 LINE L1 -82 6092 5662 359 306 60 49 chr2_random 1192653 1192836 -146976 - MIR SINE MIR -25 237 53 335 282 92 23 chr2_random 1193890 1194064 -145748 - REP3 LTR ERV -373 189 4 273 234 78 0 chr2_random 1194067 1194131 -145681 + MER45B DNA AcHobo 312 380 -660 1311 68 6 0 chr2_random 1194579 1194742 -145070 - U1 snRNA snRNA -1 164 1 506 250 29 7 chr2_random 1195153 1195293 -144519 - Charlie4 DNA MER1_type -4 1957 1815 428 241 80 113 chr2_random 1195777 1195843 -143969 - L1ME2 LINE L1 -215 6185 6118 3658 145 44 61 chr2_random 1195843 1196546 -143266 - LTR8 LTR ERV1 0 691 1 428 241 80 113 chr2_random 1196546 1196691 -143121 - L1ME2 LINE L1 -282 6118 5981 1876 211 26 7 chr2_random 1196712 1197138 -142674 - LTR56 LTR ERV1 0 445 12 5428 53 25 17 chr2_random 1197146 1197914 -141898 + SVA Other Other 1 774 -612 294 241 0 0 chr2_random 1198059 1198117 -141695 - MER89 LTR ERV1 -146 413 356 999 134 117 0 chr2_random 1198122 1198286 -141526 + LTR49 LTR ERV1 1 184 -411 2759 186 12 27 chr2_random 1198286 1198443 -141369 + MER72 LTR ERV1 1 159 -563 3833 111 48 26 chr2_random 1198443 1198603 -141209 + MER51D LTR ERV1 1 156 -501 2104 112 0 3 chr2_random 1198603 1198898 -140914 + AluSx SINE Alu 1 294 -18 3833 111 48 26 chr2_random 1198898 1199378 -140434 + MER51D LTR ERV1 156 655 -2 2759 186 12 27 chr2_random 1199378 1199732 -140080 + MER72 LTR ERV1 159 504 -218 1955 104 73 0 chr2_random 1199836 1200124 -139688 - AluSp SINE Alu -4 309 1 1150 120 30 0 chr2_random 1200254 1200421 -139391 - AluSg/x SINE Alu -7 305 134 641 27 0 0 chr2_random 1200924 1200999 -138813 - tRNA-Asn-AAC tRNA tRNA -2 75 1 235 254 0 0 chr2_random 1202137 1202204 -137608 - L1ME2 LINE L1 -2067 5977 5911 1103 266 153 2 chr2_random 1202271 1202779 -137033 - L1ME2 LINE L1 -4257 2306 1722 32 43 0 0 chr2_random 1202884 1202930 -136882 + AT_rich Low_complexity Low_complexity 1 46 0 325 290 20 0 chr2_random 1204017 1204117 -135695 - L2 LINE L2 -804 2510 2409 3216 142 32 25 chr2_random 1204157 1204748 -135064 + LTR49 LTR ERV1 1 595 0 6206 132 125 57 chr2_random 1204750 1205934 -133878 + LTR49-int LTR ERV1 1 1104 -5227 326 301 0 0 chr2_random 1205934 1206007 -133805 + tRNA-Glu-GAG tRNA tRNA 3 75 0 6206 132 125 57 chr2_random 1206007 1206090 -133722 + LTR49-int LTR ERV1 1104 1180 -5151 1865 158 0 16 chr2_random 1206090 1206407 -133405 - AluSx SINE Alu 0 312 1 6206 132 125 57 chr2_random 1206407 1206428 -133384 + LTR49-int LTR ERV1 1180 1377 -4954 1608 162 44 3 chr2_random 1206430 1206726 -133086 - L1ME2 LINE L1 -4820 1564 1257 1980 121 4 0 chr2_random 1206728 1207008 -132804 + AluSp SINE Alu 1 281 -32 180 0 0 0 chr2_random 1211496 1211516 -128296 + (T)n Simple_repeat Simple_repeat 1 20 0 456 242 23 15 chr2_random 1211743 1211875 -127937 + MIR3 SINE MIR 44 176 -32 394 278 92 40 chr2_random 1213587 1213760 -126052 - MER5A DNA MER1_type -1 188 7 24 32 0 0 chr2_random 1213833 1213864 -125948 + AT_rich Low_complexity Low_complexity 1 31 0 1335 275 58 50 chr2_random 1213966 1214464 -125348 + L1M1 LINE L1 16 517 -7048 5675 134 173 62 chr2_random 1214469 1215885 -123927 + pTR5 LTR ERV1 742 2432 -6 3421 233 51 27 chr2_random 1215885 1216824 -122988 + L1M1 LINE L1 1620 2581 -4984 * 36611 103 8 11 chr2_random 1216823 1222984 -116828 - L1PA6 LINE L1 -2 6152 13 465 113 0 14 chr2_random 1223014 1223085 -116727 - AluJb SINE Alu -179 133 64 2200 165 18 3 chr2_random 1223085 1223467 -116345 + LOR1b LTR ERV1 72 459 -2 444 153 0 0 chr2_random 1224258 1224330 -115482 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 338 12 0 chr2_random 1225237 1225317 -114495 + GA-rich Low_complexity Low_complexity 3 83 0 252 141 125 0 chr2_random 1226716 1226780 -113032 + HAL1 LINE L1 2281 2352 -155 318 245 10 69 chr2_random 1226849 1226951 -112861 + L1MC4 LINE L1 6608 6703 -1339 225 0 0 0 chr2_random 1226951 1226976 -112836 + (CA)n Simple_repeat Simple_repeat 2 26 0 271 358 60 13 chr2_random 1227127 1227429 -112383 + L1ME LINE L1 5476 5791 -330 180 260 211 49 chr2_random 1227502 1227625 -112187 - MIR SINE MIR -16 246 104 623 58 23 0 chr2_random 1228553 1228640 -111172 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 640 28 0 0 chr2_random 1228920 1228992 -110820 + tRNA-His-CAC tRNA tRNA 1 72 -3 1142 246 69 27 chr2_random 1229866 1230420 -109392 - L1ME LINE L1 -480 5684 5114 180 179 0 0 chr2_random 1230648 1230687 -109125 + CT-rich Low_complexity Low_complexity 1 39 0 1949 240 64 69 chr2_random 1230988 1232119 -107693 - L1ME2 LINE L1 -182 5982 4852 1316 180 97 17 chr2_random 1232119 1232408 -107404 + AluJb SINE Alu 1 312 0 1949 240 64 69 chr2_random 1232408 1232565 -107247 - L1ME2 LINE L1 -1312 4852 4696 230 213 16 16 chr2_random 1232568 1232629 -107183 - L1ME3 LINE L1 -53 6109 6049 5246 112 121 41 chr2_random 1232713 1233797 -106015 + MER11A LTR ERVK 1 1266 0 246 233 67 0 chr2_random 1233798 1233858 -105954 - HAL1 LINE L1 -2028 479 416 1380 188 33 63 chr2_random 1234033 1234395 -105417 + MLT1A1 LTR MaLR 13 363 -2 335 233 108 62 chr2_random 1235996 1236125 -103687 + MER20 DNA MER1_type 83 217 -2 369 311 24 18 chr2_random 1236165 1236329 -103483 - L2 LINE L2 -799 2515 2351 398 197 0 0 chr2_random 1236820 1236891 -102921 + tRNA-Glu-GAG tRNA tRNA 2 72 -3 1297 120 0 0 chr2_random 1237801 1237984 -101828 + AluSg/x SINE Alu 105 287 -25 2271 243 6 34 chr2_random 1238035 1238567 -101245 + MER87 LTR ERV1 3 519 -22 574 118 0 0 chr2_random 1238577 1238662 -101150 + AluJ/FRAM SINE Alu 221 305 -7 1794 119 88 0 chr2_random 1239464 1239749 -100063 + AluSx SINE Alu 1 310 -2 295 209 15 0 chr2_random 1239782 1239849 -99963 - MER4B-int LTR ERV1 -925 5833 5766 808 199 12 0 chr2_random 1239867 1240028 -99784 + AluJb SINE Alu 140 302 -10 315 96 0 0 chr2_random 1240328 1240380 -99432 + (TA)n Simple_repeat Simple_repeat 2 53 0 908 158 6 0 chr2_random 1240608 1240772 -99040 + FRAM SINE Alu 3 167 -9 902 57 0 25 chr2_random 1240944 1241066 -98746 - AluSq/x SINE Alu -192 120 2 488 196 27 36 chr2_random 1241067 1241179 -98633 + LTR56 LTR ERV1 9 119 -326 292 292 44 36 chr2_random 1241351 1241488 -98324 + Charlie4 DNA MER1_type 1816 1953 -8 610 217 0 23 chr2_random 1241920 1242049 -97763 + U1 snRNA snRNA 3 128 -37 951 189 189 104 chr2_random 1242059 1242462 -97350 + LTR4 LTR ERV1 49 485 -111 1622 103 0 4 chr2_random 1242462 1242695 -97117 + AluY SINE Alu 1 232 -79 417 86 0 0 chr2_random 1242942 1243000 -96812 + (TG)n Simple_repeat Simple_repeat 1 58 0 633 205 0 0 chr2_random 1243000 1243117 -96695 - FLAM_C SINE Alu -16 117 1 1043 214 145 80 chr2_random 1243218 1243756 -96056 + L1MEc LINE L1 1566 2138 -4258 633 118 0 0 chr2_random 1244508 1244601 -95211 + AluJb SINE Alu 205 297 -15 514 122 0 0 chr2_random 1245199 1245273 -94539 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 2131 83 3 7 chr2_random 1245298 1245600 -94212 - AluSc SINE Alu -8 301 1 758 170 52 7 chr2_random 1245729 1245864 -93948 - AluJo SINE Alu -169 143 3 1139 204 43 74 chr2_random 1246015 1246314 -93498 - AluJo SINE Alu -11 291 2 475 134 0 0 chr2_random 1246349 1246431 -93381 - AluSg SINE Alu -2 307 226 833 147 126 0 chr2_random 1246431 1246574 -93238 - AluSg SINE Alu -149 161 1 798 236 0 6 chr2_random 1246709 1246870 -92942 - FRAM SINE Alu -19 157 1 40 37 0 0 chr2_random 1246906 1246960 -92852 + AT_rich Low_complexity Low_complexity 1 54 0 217 163 54 0 chr2_random 1246970 1247062 -92750 + (TA)n Simple_repeat Simple_repeat 1 97 0 859 148 0 0 chr2_random 1247063 1247185 -92627 - FLAM_C SINE Alu -11 122 1 1696 127 0 117 chr2_random 1247214 1247538 -92274 - AluJb SINE Alu -16 286 1 207 69 0 0 chr2_random 1248001 1248030 -91782 + (TC)n Simple_repeat Simple_repeat 1 29 0 513 0 0 0 chr2_random 1248448 1248505 -91307 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 1942 146 0 0 chr2_random 1248713 1249007 -90805 - AluSx SINE Alu -18 294 1 1425 171 6 61 chr2_random 1249479 1249806 -90006 + AluJo SINE Alu 1 309 -3 558 240 0 0 chr2_random 1249841 1249962 -89850 + AluJo SINE Alu 2 122 -180 412 240 40 0 chr2_random 1249972 1250072 -89740 + AluJo SINE Alu 179 282 -20 2040 118 3 13 chr2_random 1250198 1250513 -89299 + AluSx SINE Alu 1 312 0 1552 188 23 108 chr2_random 1250515 1250649 -89163 + LTR56 LTR ERV1 9 153 -314 1550 164 0 47 chr2_random 1250649 1250947 -88865 - AluSx SINE Alu -28 284 1 1552 188 23 108 chr2_random 1250947 1251313 -88499 + LTR56 LTR ERV1 153 466 -1 3277 176 27 34 chr2_random 1251388 1252064 -87748 - LTR51 LTR ERV1 0 671 1 2084 125 0 0 chr2_random 1253518 1253821 -85991 + AluSg SINE Alu 1 303 -7 1125 178 33 21 chr2_random 1254207 1254449 -85363 - AluJo SINE Alu -24 288 44 2259 95 3 0 chr2_random 1254782 1255087 -84725 + AluSx SINE Alu 1 306 -6 267 361 87 25 chr2_random 1255497 1255852 -83960 + MER110-int LTR ERV1 2177 2553 -2094 849 244 0 0 chr2_random 1256099 1256259 -83553 - FRAM SINE Alu -3 163 4 447 258 6 18 chr2_random 1257286 1257449 -82363 + U1 snRNA snRNA 4 164 -1 195 188 0 0 chr2_random 1257987 1258035 -81777 + CT-rich Low_complexity Low_complexity 1 48 0 342 194 30 0 chr2_random 1259464 1259531 -80281 - tRNA-Gly-GGG tRNA tRNA -3 71 3 232 27 54 0 chr2_random 1260329 1260366 -79446 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 367 213 0 27 chr2_random 1260391 1260466 -79346 + tRNA-Gly-GGG tRNA tRNA 1 73 -1 3695 107 61 40 chr2_random 1260527 1261084 -78728 - MER51D LTR ERV1 0 657 84 6993 50 3 39 chr2_random 1261084 1262190 -77622 - L1PA5 LINE L1 -2 6152 5037 3695 107 61 40 chr2_random 1262190 1262276 -77536 - MER51D LTR ERV1 -573 84 1 236 191 29 15 chr2_random 1262729 1262797 -77015 + (TA)n Simple_repeat Simple_repeat 1 69 0 597 241 0 0 chr2_random 1262902 1263014 -76798 + FLAM_A SINE Alu 2 113 -29 2074 130 3 0 chr2_random 1263014 1263313 -76499 - AluSx SINE Alu -12 300 1 315 0 0 0 chr2_random 1263422 1263457 -76355 + (TA)n Simple_repeat Simple_repeat 2 36 0 346 356 59 30 chr2_random 1263496 1263732 -76080 + MIR SINE MIR 12 254 -8 775 239 57 2 chr2_random 1263747 1264006 -75806 - L1ME2 LINE L1 -1 6161 5889 1697 167 16 16 chr2_random 1264095 1264406 -75406 - AluJb SINE Alu -1 311 1 923 300 53 40 chr2_random 1264882 1265417 -74395 - L2 LINE L2 -282 2990 2445 1895 96 4 7 chr2_random 1267042 1267322 -72490 + AluY SINE Alu 33 311 0 680 151 42 2 chr2_random 1267653 1267897 -71915 + AluJb SINE Alu 3 304 -8 693 248 119 46 chr2_random 1267962 1268415 -71397 - L1ME2 LINE L1 -519 5651 5165 1712 162 3 7 chr2_random 1268415 1268711 -71101 - AluJb SINE Alu -16 296 2 693 248 119 46 chr2_random 1268711 1268759 -71053 - L1ME2 LINE L1 -1005 5165 5122 2087 113 10 0 chr2_random 1268868 1269168 -70644 - AluSp SINE Alu -9 304 2 497 230 34 27 chr2_random 1269543 1269691 -70121 - L2 LINE L2 -821 2493 2345 797 178 30 24 chr2_random 1270110 1270279 -69533 + MER58 DNA MER1_type 2238 2407 -13 4503 156 58 6 chr2_random 1270451 1271546 -68266 + L1PA16 LINE L1 5018 6157 -9 1883 250 47 14 chr2_random 1271613 1272256 -67556 + L1M4 LINE L1 3012 3675 -2471 1851 142 7 0 chr2_random 1273250 1273572 -66240 + AluSx SINE Alu 3 312 0 495 127 0 0 chr2_random 1273696 1273767 -66045 - tRNA-Gly-GGG tRNA tRNA -3 71 1 2001 114 3 28 chr2_random 1274630 1274947 -64865 - L1PA11 LINE L1 -1 6173 5865 1770 119 21 28 chr2_random 1274959 1275245 -64567 + AluSg SINE Alu 1 284 -26 321 234 86 126 chr2_random 1275327 1275549 -64263 - L1MDa LINE L1 -3956 2584 2372 2176 108 0 10 chr2_random 1275933 1276240 -63572 + AluSg SINE Alu 1 304 -6 1517 255 103 23 chr2_random 1276255 1276816 -62996 + L1ME2 LINE L1 5550 6155 -9 207 0 0 0 chr2_random 1276831 1276854 -62958 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 417 167 0 0 chr2_random 1277309 1277381 -62431 - tRNA-His-CAC tRNA tRNA -3 72 1 982 153 109 0 chr2_random 1277835 1278018 -61794 + AluJb SINE Alu 78 280 -32 189 0 0 0 chr2_random 1278019 1278040 -61772 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 317 341 71 46 chr2_random 1278367 1278692 -61120 - L1MC4a LINE L1 -1935 5873 5541 379 259 84 44 chr2_random 1279485 1279736 -60076 - L1ME LINE L1 -368 5796 5536 2741 181 88 32 chr2_random 1280079 1280705 -59107 - MER67B LTR ERV1 0 661 1 1154 219 7 19 chr2_random 1281217 1281487 -58325 + MLT2B1 LTR ERVL 1 267 -253 3515 174 23 61 chr2_random 1281854 1282734 -57078 - L1MD1 LINE L1 0 6242 5397 239 140 0 80 chr2_random 1282736 1282786 -57026 - MLT1B LTR MaLR -344 46 1 6052 226 53 27 chr2_random 1282786 1284933 -54879 - L1MDa LINE L1 -3460 3080 874 320 242 0 0 chr2_random 1285498 1285564 -54248 - tRNA-Lys-AAG tRNA tRNA -9 67 2 527 72 0 0 chr2_random 1285980 1286049 -53763 + tRNA-Glu-GAG tRNA tRNA 4 72 -3 474 335 34 0 chr2_random 1286284 1286463 -53349 - MIR SINE MIR 0 262 78 181 238 86 95 chr2_random 1286926 1287031 -52781 - L3 LINE CR1 -320 1257 1154 229 314 153 0 chr2_random 1287346 1287464 -52348 + L2 LINE L2 3137 3272 0 300 225 0 38 chr2_random 1288551 1288631 -51181 + L1MEc LINE L1 18 94 -6302 1421 177 4 11 chr2_random 1288664 1288929 -50883 + AluJb SINE Alu 20 282 -30 318 50 0 0 chr2_random 1288929 1288969 -50843 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 1479 148 0 8 chr2_random 1288970 1289213 -50599 + AluSc SINE Alu 1 241 -68 539 249 83 37 chr2_random 1289213 1289454 -50358 + L1MEc LINE L1 1042 1293 -5103 444 254 111 8 chr2_random 1289456 1289582 -50230 - FLAM_C SINE Alu -3 140 2 1645 256 127 45 chr2_random 1289583 1290369 -49443 + L1MEc LINE L1 1288 2138 -4258 1985 115 0 4 chr2_random 1290559 1290837 -48975 + AluSc SINE Alu 2 278 -31 363 78 0 0 chr2_random 1290837 1290888 -48924 + (GGGAGA)n Simple_repeat Simple_repeat 2 52 0 27 29 0 0 chr2_random 1291804 1291838 -47974 + AT_rich Low_complexity Low_complexity 1 34 0 1113 247 18 4 chr2_random 1291979 1292254 -47558 + AluJo SINE Alu 27 305 -7 1214 261 92 19 chr2_random 1292328 1292739 -47073 - L1 LINE L1 -1443 4703 4257 329 102 17 0 chr2_random 1292739 1292798 -47014 + (TG)n Simple_repeat Simple_repeat 2 61 0 1214 261 92 19 chr2_random 1292798 1292872 -46940 - L1 LINE L1 -1889 4257 4190 373 284 158 47 chr2_random 1292864 1293631 -46181 - L1M4c LINE L1 -4701 1516 816 * 1551 130 11 52 chr2_random 1293631 1293900 -45912 - AluSp SINE Alu -6 307 50 1101 264 21 8 chr2_random 1294204 1294591 -45221 + L1M4 LINE L1 4859 5250 -896 509 297 31 10 chr2_random 1294598 1294790 -45022 + MLT2D LTR ERVL 1 196 -218 240 179 168 11 chr2_random 1294815 1294910 -44902 + MLT2D LTR ERVL 371 480 -40 189 94 0 0 chr2_random 1296143 1296175 -43637 + (CA)n Simple_repeat Simple_repeat 1 32 0 550 310 50 52 chr2_random 1296533 1296975 -42837 + L1MC4 LINE L1 7189 7629 -413 272 133 17 0 chr2_random 1298316 1298376 -41436 + GA-rich Low_complexity Low_complexity 1 61 0 231 157 0 0 chr2_random 1299837 1299888 -39924 + GA-rich Low_complexity Low_complexity 1 51 0 303 93 0 0 chr2_random 1302919 1302962 -36850 + (CA)n Simple_repeat Simple_repeat 2 44 0 16578 92 2 18 chr2_random 1305193 1307583 -32229 + L1P LINE L1 875 3226 -2920 1737 156 0 0 chr2_random 1308310 1308591 -31221 + AluSx SINE Alu 38 318 0 385 190 50 40 chr2_random 1311681 1311781 -28031 + L1MB5 LINE L1 6065 6165 -9 439 262 134 20 chr2_random 1312719 1312921 -26891 - MIR SINE MIR -17 245 21 324 64 0 0 chr2_random 1313035 1313082 -26730 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1840 139 4 0 chr2_random 1313086 1313359 -26453 - AluSg SINE Alu -36 274 1 231 258 16 16 chr2_random 1315738 1315800 -24012 - MIR SINE MIR -64 144 83 192 349 101 0 chr2_random 1315906 1316035 -23777 - MIR SINE MIR -13 249 108 228 324 96 7 chr2_random 1317382 1317518 -22294 - MER5A DNA MER1_type -28 161 14 346 261 36 2 chr2_random 1317527 1317635 -22177 - MIR SINE MIR -35 173 61 2017 138 24 0 chr2_random 1317838 1318136 -21676 - AluJo SINE Alu -7 305 1 26 0 0 0 chr2_random 1318146 1318172 -21640 + AT_rich Low_complexity Low_complexity 1 26 0 3452 219 49 20 chr2_random 1318244 1319329 -20483 - L1MB7 LINE L1 -26 6158 5036 260 336 81 13 chr2_random 1319950 1320099 -19713 - MIR SINE MIR -73 189 31 1481 278 96 48 chr2_random 1320388 1320592 -19220 - L1ME3 LINE L1 -1 6161 5968 2677 167 12 2 chr2_random 1320592 1321018 -18794 - MSTB1 LTR MaLR 0 432 3 1481 278 96 48 chr2_random 1321018 1321074 -18738 - L1ME3 LINE L1 -194 5968 5916 1810 119 49 14 chr2_random 1321074 1321359 -18453 + AluSx SINE Alu 1 295 -17 1481 278 96 48 chr2_random 1321359 1322335 -17477 - L1ME3 LINE L1 -246 5916 4862 2067 62 0 0 chr2_random 1322364 1322604 -17208 + L1PA6 LINE L1 5909 6148 -6 25 0 0 0 chr2_random 1322606 1322631 -17181 + AT_rich Low_complexity Low_complexity 1 25 0 772 297 109 12 chr2_random 1323434 1323919 -15893 - L1ME3 LINE L1 -1286 4860 4329 2285 263 75 15 chr2_random 1323937 1324391 -15421 - L1ME1 LINE L1 -5 6161 5736 4980 82 18 14 chr2_random 1324391 1325047 -14765 + PABL_A LTR ERV1 2 660 0 2285 263 75 15 chr2_random 1325047 1325411 -14401 - L1ME1 LINE L1 -430 5736 5294 392 44 0 77 chr2_random 1325420 1325511 -14301 + (TA)n Simple_repeat Simple_repeat 2 85 0 426 232 58 0 chr2_random 1325523 1325661 -14151 + L1ME2 LINE L1 5300 5445 -717 749 41 0 91 chr2_random 1325776 1325973 -13839 + (TA)n Simple_repeat Simple_repeat 1 179 0 234 351 0 0 chr2_random 1326121 1326198 -13614 + (TATG)n Simple_repeat Simple_repeat 4 80 0 2529 273 25 39 chr2_random 1326208 1326639 -13173 - L1MB7 LINE L1 -1290 4856 4421 2177 144 0 0 chr2_random 1326639 1326945 -12867 - AluY SINE Alu -5 306 1 2529 273 25 39 chr2_random 1326945 1327551 -12261 - L1MB7 LINE L1 -1725 4421 3833 21 71 0 0 chr2_random 1327582 1327624 -12188 + AT_rich Low_complexity Low_complexity 1 42 0 311 230 35 44 chr2_random 1327745 1327858 -11954 - L1MB7 LINE L1 -3406 2740 2629 342 304 117 13 chr2_random 1328366 1328596 -11216 - L1MEc LINE L1 -6014 382 129 1847 251 64 21 chr2_random 1328696 1329317 -10495 + MLT1E3 LTR MaLR 1 622 -2 315 301 11 0 chr2_random 1329986 1330079 -9733 - LTR16B LTR ERVL -370 94 1 583 285 45 20 chr2_random 1330100 1330300 -9512 - ERVL LTR ERVL -3761 2003 1799 381 366 9 9 chr2_random 1330464 1330685 -9127 - ERVL LTR ERVL -3546 1450 1230 534 265 95 40 chr2_random 1330725 1331007 -8805 - LTR33 LTR ERVL -248 275 9 254 213 66 16 chr2_random 1331586 1331647 -8165 + MIR3 SINE MIR 138 201 -7 448 272 42 72 chr2_random 1332557 1332888 -6924 + L1PA8A LINE L1 5480 5800 -331 * 1704 188 58 11 chr2_random 1332616 1332977 -6835 + L1ME2 LINE L1 5524 5901 -263 415 281 15 69 chr2_random 1333085 1333288 -6524 + MLT1-int LTR MaLR 1010 1201 -170 745 285 126 17 chr2_random 1333294 1333649 -6163 + MLT1E3 LTR MaLR 229 654 0 1816 137 11 4 chr2_random 1333901 1334201 -5611 + AluSq SINE Alu 13 314 0 349 290 37 25 chr2_random 1334528 1334690 -5122 + L1MB8 LINE L1 5990 6153 -25 828 275 99 26 chr2_random 1334700 1335082 -4730 + L1MCa LINE L1 21 430 -5996 3566 201 33 17 chr2_random 1335091 1336598 -3214 + L1MC2 LINE L1 4721 6339 -5 640 198 0 12 chr2_random 1337080 1337252 -2560 + GA-rich Low_complexity Low_complexity 3 172 0 192 381 57 0 chr2_random 1337734 1337839 -1973 + L2 LINE L2 3198 3308 -5 234 241 121 0 chr2_random 1338323 1338381 -1431 - L2 LINE L2 -1 3312 3248 523 277 43 0 chr2_random 1338727 1338868 -944 - L2 LINE L2 -797 2517 2371 2123 111 0 7 chr2_random 1338923 1339211 -601 + AluY SINE Alu 20 305 -6 1042 128 29 23 chr2_random 1339220 1339392 -420 + AluJo SINE Alu 83 255 -57