201 219 31 0 chr21 10000427 10000491 -34907079 + (TA)n Simple_repeat Simple_repeat 1 66 0 837 58 117 0 chr21 10001071 10001191 -34906379 + MER85 DNA T2_type 4 137 -2 2853 185 47 7 chr21 10002915 10003509 -34904061 - MER54A LTR ERVL 0 901 284 931 107 0 0 chr21 10003509 10003630 -34903940 + FRAM SINE Alu 28 148 -28 1990 145 14 0 chr21 10004278 10004568 -34903002 - AluSx SINE Alu -18 294 1 2277 101 17 0 chr21 10004620 10004918 -34902652 - AluSc SINE Alu -6 303 1 21 0 0 0 chr21 10004982 10005003 -34902567 + AT_rich Low_complexity Low_complexity 1 21 0 2357 109 3 0 chr21 10005702 10006014 -34901556 + AluSp SINE Alu 1 313 0 724 194 0 2 chr21 10006037 10006293 -34901277 + AluJ SINE Alu 2 310 -2 285 29 0 0 chr21 10006307 10006341 -34901229 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 301 232 143 9 chr21 10006589 10006701 -34900869 - MIR SINE MIR -55 207 81 604 316 16 5 chr21 10007495 10007682 -34899888 + MER5A DNA MER1_type 1 189 0 2295 125 0 0 chr21 10008426 10008738 -34898832 + AluSx SINE Alu 1 312 0 275 292 21 10 chr21 10008966 10009062 -34898508 - L3b LINE CR1 -362 1221 1125 2012 123 0 0 chr21 10010808 10011085 -34896485 + AluSx SINE Alu 11 287 -25 225 0 0 0 chr21 10011088 10011113 -34896457 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr21 10012159 10012186 -34895384 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 401 248 80 24 chr21 10012447 10012572 -34894998 + MIR SINE MIR 89 220 -42 566 224 66 86 chr21 10012572 10012979 -34894591 + L1MC5 LINE L1 7405 7803 -158 205 291 105 12 chr21 10013154 10013240 -34894330 + MIR SINE MIR 148 241 -21 252 0 0 0 chr21 10013307 10013335 -34894235 + (CA)n Simple_repeat Simple_repeat 2 29 0 183 42 0 0 chr21 10013955 10013979 -34893591 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1930 122 0 11 chr21 10013982 10014261 -34893309 - AluSx SINE Alu -36 276 1 482 278 16 42 chr21 10014321 10014512 -34893058 - MIR3 SINE MIR 0 208 23 370 279 9 9 chr21 10014615 10014726 -34892844 + MER112 DNA MER1_type 142 252 -8 622 170 119 6 chr21 10015257 10015416 -34892154 - MER96B DNA MER1_type? -238 179 3 580 177 0 0 chr21 10015763 10015859 -34891711 - AluSg/x SINE Alu -13 297 202 425 336 93 15 chr21 10015870 10016194 -34891376 + L1M4 LINE L1 3479 3827 -2319 2365 148 15 10 chr21 10016195 10016601 -34890969 + L1PA15-16 LINE L1 5 412 -6437 6455 122 33 10 chr21 10016609 10017761 -34889809 + L1PA15-16 LINE L1 1307 2484 -4365 745 164 138 48 chr21 10017760 10017991 -34889579 + L1P LINE L1 3756 4007 -2139 * 2322 104 3 0 chr21 10017992 10018289 -34889281 + AluSx SINE Alu 1 298 -14 2453 86 0 0 chr21 10018291 10018594 -34888976 + AluSq SINE Alu 1 303 -10 1700 164 22 3 chr21 10018594 10018906 -34888664 + L1PA16 LINE L1 5828 6145 -21 657 280 46 24 chr21 10018980 10019309 -34888261 + L1M4 LINE L1 3816 4151 -1995 3444 257 104 43 chr21 10019566 10020881 -34886689 + L1ME LINE L1 2640 3874 -2288 1982 142 10 6 chr21 10020881 10021192 -34886378 - AluSx SINE Alu 0 312 1 3444 257 104 43 chr21 10021192 10021225 -34886345 + L1ME LINE L1 3874 3904 -2258 324 0 0 0 chr21 10021225 10021261 -34886309 + (CA)n Simple_repeat Simple_repeat 2 37 0 3444 257 104 43 chr21 10021261 10021496 -34886074 + L1ME LINE L1 3904 4123 -2039 1893 147 7 26 chr21 10021496 10021803 -34885767 + AluJb SINE Alu 1 301 -11 3444 257 104 43 chr21 10021803 10023108 -34884462 + L1ME LINE L1 4123 5712 -450 2079 140 3 0 chr21 10023108 10023408 -34884162 + AluSx SINE Alu 1 301 -11 3444 257 104 43 chr21 10023408 10023448 -34884122 + L1ME LINE L1 5712 5748 -414 379 258 19 7 chr21 10023577 10023732 -34883838 + L1M4 LINE L1 4536 4692 -1454 403 268 70 83 chr21 10023927 10024108 -34883462 + L1M4 LINE L1 4990 5167 -979 1971 152 0 7 chr21 10024108 10024405 -34883165 + AluJb SINE Alu 3 297 -15 403 268 70 83 chr21 10024405 10024537 -34883033 + L1M4 LINE L1 5167 5299 -847 343 169 26 13 chr21 10024833 10024910 -34882660 - MER116 DNA Mariner 0 80 3 5313 139 42 34 chr21 10025413 10026644 -34880926 + L1MA8 LINE L1 4774 6024 -267 1592 124 124 16 chr21 10026644 10026901 -34880669 - AluSg1 SINE Alu -24 285 1 5313 139 42 34 chr21 10026901 10027172 -34880398 + L1MA8 LINE L1 6024 6291 0 322 313 20 0 chr21 10027303 10027402 -34880168 + CT-rich Low_complexity Low_complexity 2 102 0 426 39 0 0 chr21 10029263 10029315 -34878255 + (TA)n Simple_repeat Simple_repeat 1 52 0 3100 93 38 23 chr21 10029916 10030441 -34877129 - L1P4 LINE L1 -387 5787 5255 4264 230 32 25 chr21 10030456 10031641 -34875929 - L1PA12 LINE L1 -6379 1202 10 897 255 24 18 chr21 10032095 10032354 -34875216 + MLT1H LTR MaLR 1 301 -248 1492 103 34 0 chr21 10032422 10032656 -34874914 - L1MA5 LINE L1 -3 6297 6056 3091 190 15 31 chr21 10032663 10033663 -34873907 - L1 LINE L1 -3529 3679 2693 1951 156 3 7 chr21 10033663 10033970 -34873600 - AluSx SINE Alu -3 309 4 3091 190 15 31 chr21 10033970 10034089 -34873481 - L1 LINE L1 -4515 2693 2574 1915 167 10 0 chr21 10034120 10034413 -34873157 - AluSx SINE Alu -14 298 3 2227 243 46 57 chr21 10034414 10035209 -34872361 - L1 LINE L1 -4865 2344 1516 562 184 6 113 chr21 10035263 10035431 -34872139 + MLT1H LTR MaLR 378 527 -22 737 171 19 171 chr21 10036775 10037033 -34870537 + MER20 DNA MER1_type 1 219 0 676 224 33 77 chr21 10037294 10037477 -34870093 - MER5A DNA MER1_type -1 188 14 371 136 61 0 chr21 10037968 10038034 -34869536 - U2 snRNA snRNA -118 70 1 8129 148 21 23 chr21 10038733 10039145 -34868425 - L1MA2 LINE L1 -72 7651 7240 2473 80 0 0 chr21 10039145 10039446 -34868124 - AluSp SINE Alu -12 301 1 8129 148 21 23 chr21 10039446 10041605 -34865965 - L1MA2 LINE L1 -483 7240 5091 2165 134 0 0 chr21 10041607 10041913 -34865657 - AluSx SINE Alu -6 306 1 13779 132 29 14 chr21 10041923 10041966 -34865604 - L1MA2 LINE L1 -3890 3675 3634 2224 110 0 0 chr21 10041966 10042265 -34865305 - AluSc SINE Alu -8 301 3 13779 132 29 14 chr21 10042265 10044612 -34862958 - L1MA2 LINE L1 -3931 3634 1249 2014 113 0 0 chr21 10044631 10044897 -34862673 - AluSg SINE Alu -12 298 33 267 31 0 0 chr21 10045114 10045146 -34862424 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 216 67 0 0 chr21 10046195 10046225 -34861345 + (TA)n Simple_repeat Simple_repeat 2 31 0 2215 131 0 0 chr21 10046237 10046549 -34861021 - AluSx SINE Alu 0 312 1 5813 94 12 16 chr21 10047568 10048401 -34859169 + L1PA14 LINE L1 5332 6161 0 408 309 55 10 chr21 10048842 10049043 -34858527 + HAL1b LINE L1 466 675 -673 7825 44 1 1 chr21 10049048 10050098 -34857472 + L1PA5 LINE L1 5105 6154 0 2356 83 3 3 chr21 10050635 10050936 -34856634 + AluSc SINE Alu 1 301 -8 331 328 141 7 chr21 10051272 10051571 -34855999 + L1ME4a LINE L1 4915 5253 -893 554 271 62 26 chr21 10051745 10052018 -34855552 + L1ME4a LINE L1 5588 5870 -251 209 303 0 0 chr21 10052421 10052487 -34855083 + L2 LINE L2 2565 2630 -684 22 0 0 0 chr21 10052508 10052530 -34855040 + AT_rich Low_complexity Low_complexity 1 22 0 266 211 28 0 chr21 10053733 10053804 -34853766 + (TA)n Simple_repeat Simple_repeat 2 74 0 2091 156 71 6 chr21 10053804 10054169 -34853401 - Tigger1 DNA MER2_type -1 2417 2029 6466 226 48 23 chr21 10054175 10054698 -34852872 - L1 LINE L1 -2596 4192 3684 2432 58 7 7 chr21 10054698 10054990 -34852580 - L1PA5 LINE L1 -3 6151 5860 6466 226 48 23 chr21 10054990 10058964 -34848606 - L1 LINE L1 -3104 3684 14 7058 131 46 30 chr21 10058965 10060128 -34847442 - Tigger1 DNA MER2_type -1236 1182 1 333 200 0 26 chr21 10060129 10060244 -34847326 + (TA)n Simple_repeat Simple_repeat 2 113 0 503 201 7 0 chr21 10060293 10060437 -34847133 + (TA)n Simple_repeat Simple_repeat 2 146 0 206 62 31 0 chr21 10060480 10060512 -34847058 + (TG)n Simple_repeat Simple_repeat 2 34 0 1818 138 7 4 chr21 10061474 10061749 -34845821 + AluSg SINE Alu 11 286 -24 26 30 0 0 chr21 10061798 10061831 -34845739 + AT_rich Low_complexity Low_complexity 1 33 0 756 33 0 0 chr21 10063232 10063323 -34844247 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 1833 163 7 3 chr21 10064365 10064666 -34842904 - AluSq SINE Alu -11 302 1 256 262 0 0 chr21 10065586 10065647 -34841923 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2188 116 3 6 chr21 10065815 10066126 -34841444 - AluSg SINE Alu 0 310 1 219 36 0 0 chr21 10067008 10067036 -34840534 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 2636 58 0 0 chr21 10068147 10068458 -34839112 - AluY SINE Alu 0 311 1 235 119 17 51 chr21 10069228 10069287 -34838283 + CT-rich Low_complexity Low_complexity 2 58 0 22 70 0 0 chr21 10069327 10069370 -34838200 + AT_rich Low_complexity Low_complexity 1 43 0 2062 132 7 0 chr21 10069572 10069859 -34837711 - AluSx SINE Alu -23 289 1 197 211 19 0 chr21 10070495 10070547 -34837023 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1135 201 23 5 chr21 10070728 10070942 -34836628 + MLT1C LTR MaLR 250 467 0 788 271 120 49 chr21 10071699 10072065 -34835505 + MER57B LTR ERV1 39 430 -4 422 211 39 39 chr21 10072191 10072295 -34835275 + MER94 DNA DNA 2 105 -29 493 299 86 62 chr21 10072343 10072879 -34834691 + L1MEd LINE L1 681 1229 -4890 588 294 95 19 chr21 10073064 10073633 -34833937 + L1MEd LINE L1 2819 3430 -2699 464 306 66 12 chr21 10073826 10074068 -34833502 + L1M3 LINE L1 4778 5032 -1114 2400 145 94 2 chr21 10074292 10074686 -34832884 - MSTB1 LTR MaLR -2 430 1 638 289 56 35 chr21 10074807 10075302 -34832268 + L1M3 LINE L1 5263 5765 -406 1691 223 153 58 chr21 10075468 10076154 -34831416 + L1MC4 LINE L1 6614 7364 -678 2141 128 3 0 chr21 10076654 10076951 -34830619 - AluSg SINE Alu -12 298 1 24 32 0 0 chr21 10077124 10077155 -34830415 + AT_rich Low_complexity Low_complexity 1 31 0 399 21 0 0 chr21 10078672 10078720 -34828850 + (TG)n Simple_repeat Simple_repeat 1 48 0 6249 22 10 0 chr21 10081876 10082563 -34825007 + L1PA3 LINE L1 5461 6154 -1 1045 128 6 6 chr21 10082969 10083133 -34824437 + L1MA6 LINE L1 6131 6294 -6 649 194 46 23 chr21 10083137 10083312 -34824258 + L1MC/D LINE L1 5264 5442 -917 40 73 0 0 chr21 10083736 10083818 -34823752 + GC_rich Low_complexity Low_complexity 1 82 0 211 304 0 0 chr21 10083907 10083963 -34823607 + G-rich Low_complexity Low_complexity 101 156 0 1510 153 36 72 chr21 10084854 10084994 -34822576 + AluJb SINE Alu 3 146 -166 2249 79 7 7 chr21 10084994 10085286 -34822284 + AluY SINE Alu 1 292 -19 1510 153 36 72 chr21 10085286 10085452 -34822118 + AluJb SINE Alu 146 298 -14 346 308 6 39 chr21 10085914 10086070 -34821500 - L2 LINE L2 -4 3309 3159 367 235 121 8 chr21 10086094 10086226 -34821344 + L1MC/D LINE L1 5641 5787 -2021 2221 98 0 7 chr21 10086256 10086552 -34821018 + AluSg SINE Alu 1 294 -16 2198 75 43 0 chr21 10086568 10086846 -34820724 + AluSx SINE Alu 1 290 -22 1793 98 80 15 chr21 10087268 10087560 -34820010 - AluSx SINE Alu 0 309 1 2162 103 27 3 chr21 10087568 10087869 -34819701 - AluSq SINE Alu -5 308 1 1134 290 101 21 chr21 10087900 10088435 -34819135 - L2 LINE L2 -2 3311 2729 183 80 0 0 chr21 10088584 10088609 -34818961 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1622 162 0 25 chr21 10088615 10088899 -34818671 + AluJo SINE Alu 1 277 -35 267 103 0 0 chr21 10088900 10088939 -34818631 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 * 426 20 0 0 chr21 10088938 10088989 -34818581 + (CATA)n Simple_repeat Simple_repeat 2 52 0 30 27 0 0 chr21 10089114 10089151 -34818419 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 10089396 10089417 -34818153 + AT_rich Low_complexity Low_complexity 1 21 0 889 188 11 54 chr21 10089880 10090066 -34817504 + MER7C DNA MER2_type 1 178 -424 802 135 95 0 chr21 10090042 10090168 -34817402 + MER7C DNA MER2_type 465 602 0 * 400 233 238 32 chr21 10090327 10090516 -34817054 + MIR SINE MIR 14 241 -21 21 0 0 0 chr21 10090977 10090998 -34816572 + AT_rich Low_complexity Low_complexity 1 21 0 372 313 143 19 chr21 10092301 10092566 -34815004 + L2 LINE L2 2555 2852 -462 212 286 107 43 chr21 10092749 10092889 -34814681 + L2 LINE L2 3159 3307 -6 2035 138 24 0 chr21 10093201 10093498 -34814072 + AluSq SINE Alu 1 304 -9 2423 78 7 0 chr21 10093498 10093805 -34813765 + AluY SINE Alu 1 309 -2 1012 149 12 48 chr21 10094014 10094182 -34813388 + FRAM SINE Alu 5 166 0 1028 236 81 100 chr21 10094568 10094888 -34812682 + HAL1 LINE L1 590 896 -1611 994 121 140 29 chr21 10094888 10095095 -34812475 - MER30 DNA MER1_type 0 230 1 1028 236 81 100 chr21 10095095 10095355 -34812215 + HAL1 LINE L1 896 1159 -1348 1277 240 113 36 chr21 10095389 10095918 -34811652 + HAL1 LINE L1 1257 1826 -681 2221 96 20 0 chr21 10096211 10096513 -34811057 + AluY SINE Alu 1 308 -3 207 0 0 0 chr21 10096543 10096566 -34811004 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 5210 174 68 42 chr21 10096782 10097213 -34810357 + L1MA9 LINE L1 4038 4457 -1855 2163 108 0 23 chr21 10097213 10097519 -34810051 + AluSx SINE Alu 1 299 -13 5210 174 68 42 chr21 10097519 10098789 -34808781 + L1MA9 LINE L1 4457 5820 -492 786 213 35 30 chr21 10098789 10098991 -34808579 + MER6B DNA MER2_type 4 206 -4 5210 174 68 42 chr21 10098991 10099458 -34808112 + L1MA9 LINE L1 5820 6274 -38 329 265 78 90 chr21 10099490 10099627 -34807943 + L1MC/D LINE L1 5584 5718 -2090 2660 32 3 3 chr21 10099627 10099938 -34807632 + AluY SINE Alu 1 311 0 329 265 78 90 chr21 10099938 10100045 -34807525 + L1MC/D LINE L1 5718 5825 -1983 253 243 0 27 chr21 10100078 10100152 -34807418 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 342 311 60 27 chr21 10101255 10101438 -34806132 - MIR SINE MIR -2 260 72 2182 102 7 0 chr21 10102536 10102830 -34804740 - AluSx SINE Alu -16 296 1 739 296 152 37 chr21 10102842 10103309 -34804261 + L2 LINE L2 2579 3133 -180 2127 130 0 0 chr21 10103309 10103602 -34803968 - AluSx SINE Alu -19 293 1 739 296 152 37 chr21 10103602 10103794 -34803776 + L2 LINE L2 3133 3302 -11 794 176 0 0 chr21 10103801 10103932 -34803638 + FLAM_A SINE Alu 1 131 -2 1512 193 0 4 chr21 10104080 10104360 -34803210 + AluJb SINE Alu 28 306 -6 2271 72 0 10 chr21 10105300 10105590 -34801980 + AluY SINE Alu 1 287 -24 24 0 0 0 chr21 10105961 10105985 -34801585 + AT_rich Low_complexity Low_complexity 1 24 0 2063 109 0 21 chr21 10107842 10108127 -34799443 + AluSc SINE Alu 5 283 -26 270 0 0 0 chr21 10108131 10108161 -34799409 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 187 289 19 0 chr21 10109062 10109114 -34798456 - L2 LINE L2 -7 3265 3213 920 272 189 37 chr21 10109607 10110557 -34797013 + HAL1 LINE L1 1337 2450 -57 2103 131 3 0 chr21 10110557 10110855 -34796715 - AluSx SINE Alu -13 299 1 920 272 189 37 chr21 10110855 10110912 -34796658 + HAL1 LINE L1 2450 2497 -10 709 254 46 28 chr21 10111013 10111230 -34796340 - MER58A DNA MER1_type 0 224 4 308 367 51 8 chr21 10111363 10111600 -34795970 + L2 LINE L2 1805 2051 -1263 682 296 113 23 chr21 10111733 10112077 -34795493 + L1MEc LINE L1 56 430 -5966 447 231 89 30 chr21 10112321 10112490 -34795080 + Charlie1 DNA MER1_type 47 225 -2536 491 189 31 16 chr21 10112492 10112619 -34794951 + Charlie1 DNA MER1_type 2627 2755 -6 530 168 32 93 chr21 10114983 10115128 -34792442 + MER33 DNA MER1_type 51 232 -2353 1620 119 8 8 chr21 10115128 10115364 -34792206 - AluSq SINE Alu -22 291 56 530 168 32 93 chr21 10115364 10115452 -34792118 + MER33 DNA MER1_type 232 324 0 2096 148 0 0 chr21 10115799 10116103 -34791467 + AluSx SINE Alu 1 304 -8 2257 95 0 25 chr21 10116180 10116497 -34791073 - AluY SINE Alu -2 309 1 324 145 66 26 chr21 10116812 10116888 -34790682 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr21 10117522 10117543 -34790027 + AT_rich Low_complexity Low_complexity 1 21 0 1756 221 55 48 chr21 10117755 10118167 -34789403 + L1M4 LINE L1 3076 3484 -2662 1629 122 45 4 chr21 10118167 10118412 -34789158 + AluSx SINE Alu 1 255 -57 2161 121 3 19 chr21 10118412 10118726 -34788844 + AluSq SINE Alu 3 311 -2 1756 221 55 48 chr21 10118726 10118936 -34788634 + L1M4 LINE L1 3483 3703 -2443 1560 171 77 14 chr21 10118938 10119225 -34788345 + AluJo SINE Alu 5 309 -3 666 261 125 15 chr21 10119241 10119527 -34788043 + L1ME1 LINE L1 5776 6106 -60 225 0 0 0 chr21 10119527 10119552 -34788018 + (TA)n Simple_repeat Simple_repeat 2 26 0 666 261 125 15 chr21 10119552 10119614 -34787956 + L1ME1 LINE L1 6106 6160 -6 578 200 188 12 chr21 10120650 10120815 -34786755 - MIR SINE MIR 0 262 69 738 228 0 13 chr21 10121017 10121175 -34786395 - FRAM SINE Alu -20 156 1 2121 113 3 19 chr21 10121801 10122110 -34785460 - AluSx SINE Alu -8 304 1 212 334 167 23 chr21 10124255 10124554 -34783016 + L2 LINE L2 1181 1522 -1792 829 309 150 43 chr21 10124648 10125474 -34782096 + L2 LINE L2 2051 2995 -318 1881 142 30 3 chr21 10125474 10125769 -34781801 - AluSg SINE Alu -7 303 1 829 309 150 43 chr21 10125769 10125834 -34781736 + L2 LINE L2 2995 3052 -261 1883 151 10 10 chr21 10127775 10128087 -34779483 + AluSx SINE Alu 1 312 0 252 267 47 23 chr21 10128525 10128611 -34778959 - MER5B DNA MER1_type -89 89 2 714 153 0 29 chr21 10128662 10128799 -34778771 + FLAM_C SINE Alu 1 133 0 653 205 114 3 chr21 10129563 10129823 -34777747 + MER33 DNA MER1_type 1 363 0 26 50 0 0 chr21 10131751 10131791 -34775779 + AT_rich Low_complexity Low_complexity 1 40 0 1280 181 5 0 chr21 10133586 10133796 -34773774 - AluJb SINE Alu -14 298 88 339 293 50 29 chr21 10134156 10134296 -34773274 + L1MC4a LINE L1 5062 5204 -942 1068 157 39 57 chr21 10134303 10134533 -34773037 + AluJo SINE Alu 86 311 -1 1892 283 87 15 chr21 10134545 10135465 -34772105 + L1MC4a LINE L1 5214 5403 -743 1575 262 144 49 chr21 10135503 10135690 -34771880 + L1MC4 LINE L1 6460 6628 -1414 1382 119 60 14 chr21 10135690 10135789 -34771781 + MER30 DNA MER1_type 2 95 -135 288 0 0 0 chr21 10135789 10135821 -34771749 + (CA)n Simple_repeat Simple_repeat 2 33 0 1382 119 60 14 chr21 10135821 10135939 -34771631 + MER30 DNA MER1_type 95 229 -1 1575 262 144 49 chr21 10135939 10136447 -34771123 + L1MC4 LINE L1 6628 7278 -764 2002 129 3 3 chr21 10136447 10136774 -34770796 - AluSx SINE Alu 0 327 1 1575 262 144 49 chr21 10136774 10137058 -34770512 + L1MC4 LINE L1 7278 7534 -508 406 320 62 24 chr21 10137160 10137371 -34770199 + L1MC4 LINE L1 7689 7919 -123 297 51 0 0 chr21 10137371 10137410 -34770160 + (CA)n Simple_repeat Simple_repeat 2 40 0 406 320 62 24 chr21 10137410 10137539 -34770031 + L1MC4 LINE L1 7919 8042 0 187 265 128 51 chr21 10137676 10137793 -34769777 + L2 LINE L2 3145 3270 -2 532 304 172 0 chr21 10137921 10138125 -34769445 - MIR SINE MIR -22 240 2 25 31 0 0 chr21 10138389 10138421 -34769149 + AT_rich Low_complexity Low_complexity 1 32 0 892 230 88 45 chr21 10140415 10140767 -34766803 + L1ME1 LINE L1 5694 6060 -106 251 176 0 0 chr21 10140771 10140822 -34766748 + L1MA10 LINE L1 6284 6334 0 388 274 211 19 chr21 10141406 10141614 -34765956 + MIR SINE MIR 5 252 -10 1955 148 7 0 chr21 10144091 10144389 -34763181 - AluSx SINE Alu -12 300 1 689 201 69 6 chr21 10144508 10144667 -34762903 - MER58C DNA MER1_type -2 213 45 517 344 139 40 chr21 10144724 10145368 -34762202 + L2 LINE L2 1861 2656 -616 580 89 0 0 chr21 10145368 10145447 -34762123 + MADE1 DNA Mariner 2 80 0 517 344 139 40 chr21 10145447 10145835 -34761735 + L2 LINE L2 2656 3004 -268 2096 119 3 0 chr21 10145835 10146129 -34761441 + AluSx SINE Alu 1 295 -17 186 318 63 16 chr21 10146253 10146316 -34761254 + L2 LINE L2 3155 3220 -52 605 232 155 11 chr21 10146710 10146981 -34760589 + Charlie5 DNA MER1_type 15 2624 0 580 303 55 13 chr21 10148278 10148561 -34759009 + L2 LINE L2 2723 3017 -296 236 325 0 18 chr21 10148938 10149052 -34758518 - MIR SINE MIR -3 259 148 2095 123 0 10 chr21 10149258 10149567 -34758003 + AluSg SINE Alu 1 306 -4 21 0 0 0 chr21 10150513 10150534 -34757036 + AT_rich Low_complexity Low_complexity 1 21 0 1484 101 0 0 chr21 10153139 10153327 -34754243 + AluY SINE Alu 7 194 -117 24 0 0 0 chr21 10153368 10153392 -34754178 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr21 10154247 10154283 -34753287 + AT_rich Low_complexity Low_complexity 1 36 0 1930 143 0 23 chr21 10154345 10154653 -34752917 + AluJb SINE Alu 1 301 -11 260 269 34 17 chr21 10155165 10155284 -34752286 + HAL1 LINE L1 1134 1254 -1253 202 195 0 0 chr21 10155366 10155408 -34752162 - MIR SINE MIR -62 146 109 363 344 50 37 chr21 10155519 10155737 -34751833 + HAL1 LINE L1 1405 1625 -882 1338 180 81 8 chr21 10155893 10156154 -34751416 + MSTB LTR MaLR 1 280 -146 1222 94 6 0 chr21 10156175 10156335 -34751235 - AluSq SINE Alu -19 294 134 904 143 34 7 chr21 10156335 10156482 -34751088 + MSTB LTR MaLR 267 417 -9 234 128 0 0 chr21 10156485 10156524 -34751046 + (TA)n Simple_repeat Simple_repeat 2 40 0 415 261 88 85 chr21 10156903 10157255 -34750315 + L1ME3A LINE L1 2665 3017 -3129 1308 237 144 74 chr21 10157778 10158171 -34749399 + MLT1E2 LTR MaLR 1 404 -222 2209 98 3 31 chr21 10158171 10158489 -34749081 + AluSc SINE Alu 1 309 0 1308 237 144 74 chr21 10158489 10158727 -34748843 + MLT1E2 LTR MaLR 404 624 -2 308 293 102 39 chr21 10159049 10159305 -34748265 + L1ME3A LINE L1 5109 5380 -766 2093 139 0 0 chr21 10159393 10159703 -34747867 + AluSx SINE Alu 2 311 -1 308 275 188 7 chr21 10159711 10159849 -34747721 - MIR SINE MIR -57 205 43 2211 123 0 10 chr21 10159966 10160274 -34747296 + AluSx SINE Alu 3 307 -5 443 256 56 25 chr21 10160324 10160484 -34747086 + L1ME3A LINE L1 5670 5834 -336 1279 247 108 38 chr21 10162129 10163392 -34744178 + L1ME1 LINE L1 4768 6165 -1 248 340 0 0 chr21 10163472 10163569 -34744001 + L1ME LINE L1 531 627 -5903 1927 145 14 3 chr21 10163613 10163909 -34743661 + AluSx SINE Alu 3 301 -11 1212 273 54 33 chr21 10163909 10164484 -34743086 + L1ME LINE L1 1316 1902 -4638 4544 259 93 32 chr21 10164484 10165658 -34741912 + L1MDa LINE L1 3 1104 -5436 2159 125 3 0 chr21 10165658 10165955 -34741615 + AluSx SINE Alu 1 298 -14 4544 259 93 32 chr21 10165955 10166152 -34741418 + L1MDa LINE L1 1104 1288 -5252 1906 144 4 0 chr21 10166152 10166429 -34741141 + AluSx SINE Alu 1 278 -34 4544 259 93 32 chr21 10166429 10167094 -34740476 + L1MDa LINE L1 1288 2164 -4376 2530 211 75 59 chr21 10167094 10167682 -34739888 + Charlie1 DNA MER1_type 1443 2021 -740 1783 130 79 0 chr21 10167682 10167959 -34739611 + AluSx SINE Alu 11 309 -3 2530 211 75 59 chr21 10167959 10168089 -34739481 + Charlie1 DNA MER1_type 2021 2148 -613 243 0 0 0 chr21 10168089 10168116 -34739454 + (TA)n Simple_repeat Simple_repeat 1 27 0 2075 127 0 0 chr21 10168116 10168407 -34739163 - AluSg1 SINE Alu -18 291 1 2530 211 75 59 chr21 10168407 10168545 -34739025 + Charlie1 DNA MER1_type 2147 2314 -447 25 65 0 0 chr21 10168678 10168724 -34738846 + AT_rich Low_complexity Low_complexity 1 46 0 6139 205 35 29 chr21 10168826 10170269 -34737301 - Cheshire DNA MER1_type -761 1659 208 11041 146 45 9 chr21 10170269 10170863 -34736707 + Tigger1 DNA MER2_type 439 1010 -1408 618 174 26 9 chr21 10170863 10170978 -34736592 + FLAM_C SINE Alu 1 117 -16 315 0 0 0 chr21 10170983 10171018 -34736552 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 11041 146 45 9 chr21 10171018 10171427 -34736143 + Tigger1 DNA MER2_type 1013 1406 -1012 2031 128 3 0 chr21 10171427 10171724 -34735846 + AluSx SINE Alu 1 298 -14 11041 146 45 9 chr21 10171724 10172624 -34734946 + Tigger1 DNA MER2_type 1406 2418 0 185 280 212 10 chr21 10172926 10173119 -34734451 + L2 LINE L2 1664 1895 -1419 21 0 0 0 chr21 10173120 10173141 -34734429 + AT_rich Low_complexity Low_complexity 1 21 0 1848 117 11 8 chr21 10173225 10173491 -34734079 + AluSq SINE Alu 1 267 -46 2032 143 0 3 chr21 10173571 10173871 -34733699 + AluSx SINE Alu 1 299 -13 761 140 37 104 chr21 10173881 10174045 -34733525 + FRAM SINE Alu 1 152 -24 1504 204 0 36 chr21 10174126 10174263 -34733307 + AluJo SINE Alu 1 141 -171 1939 128 7 29 chr21 10174263 10174569 -34733001 + AluSx SINE Alu 1 299 -13 2156 128 0 0 chr21 10174572 10174878 -34732692 + AluSq SINE Alu 1 306 -7 1504 204 0 36 chr21 10174878 10175040 -34732530 + AluJo SINE Alu 143 293 -19 337 186 51 0 chr21 10175452 10175511 -34732059 - L2 LINE L2 0 3313 3252 1027 155 17 100 chr21 10175554 10175793 -34731777 + MER20 DNA MER1_type 1 219 0 533 313 58 28 chr21 10176941 10177267 -34730303 + L1ME LINE L1 5483 5818 -303 223 211 19 0 chr21 10177404 10177456 -34730114 + (TATG)n Simple_repeat Simple_repeat 3 55 0 688 225 127 24 chr21 10177930 10178143 -34729427 + MIR SINE MIR 17 251 -11 216 167 0 0 chr21 10178325 10178373 -34729197 + (TG)n Simple_repeat Simple_repeat 2 49 0 406 268 116 30 chr21 10178500 10178804 -34728766 + L2 LINE L2 2722 3057 -215 537 80 0 0 chr21 10178844 10178919 -34728651 + (CCA)n Simple_repeat Simple_repeat 3 77 0 1790 200 45 56 chr21 10179016 10179587 -34727983 + L1MC5 LINE L1 6955 7519 -442 326 234 71 43 chr21 10179640 10179781 -34727789 + L1MC5 LINE L1 7616 7760 -201 2156 113 7 7 chr21 10179782 10180091 -34727479 + AluSx SINE Alu 1 309 -3 442 186 218 77 chr21 10180091 10180247 -34727323 + MIR SINE MIR 19 196 -66 240 172 31 78 chr21 10180301 10180365 -34727205 - MIR SINE MIR -56 152 92 717 189 141 44 chr21 10180405 10180611 -34726959 + MLT1J2 LTR MaLR 2 227 -223 321 271 172 33 chr21 10180740 10180862 -34726708 - MIR SINE MIR -106 156 18 36 0 0 0 chr21 10181157 10181193 -34726377 + AT_rich Low_complexity Low_complexity 1 36 0 2549 58 0 3 chr21 10181435 10181746 -34725824 - AluY SINE Alu -1 310 1 25 31 0 0 chr21 10182074 10182106 -34725464 + AT_rich Low_complexity Low_complexity 1 32 0 2410 88 0 0 chr21 10182204 10182511 -34725059 + AluSx SINE Alu 1 307 -5 1996 139 7 0 chr21 10182682 10182976 -34724594 - AluSp SINE Alu -17 296 1 1130 67 0 0 chr21 10182976 10183110 -34724460 - AluY SINE Alu -177 134 1 25 31 0 0 chr21 10183121 10183153 -34724417 + AT_rich Low_complexity Low_complexity 1 32 0 864 89 89 0 chr21 10183172 10183295 -34724275 + AluSc SINE Alu 160 293 -16 342 207 0 0 chr21 10183301 10183359 -34724211 + MLT1J2 LTR MaLR 331 388 -2 24 53 0 0 chr21 10183380 10183418 -34724152 + AT_rich Low_complexity Low_complexity 1 38 0 1511 164 63 0 chr21 10183424 10183662 -34723908 - AluJo SINE Alu -59 253 1 1587 170 22 50 chr21 10183776 10184134 -34723436 + L1PA16 LINE L1 5803 6150 -16 22 56 0 0 chr21 10184253 10184289 -34723281 + AT_rich Low_complexity Low_complexity 1 36 0 550 302 53 26 chr21 10184463 10184652 -34722918 - MIR SINE MIR -49 213 20 233 352 67 9 chr21 10184673 10184778 -34722792 - L2 LINE L2 -9 3263 3153 2237 90 7 0 chr21 10184781 10185071 -34722499 + AluSg1 SINE Alu 2 293 -16 2030 121 6 19 chr21 10185134 10185447 -34722123 - AluSx SINE Alu -3 309 1 1616 118 134 4 chr21 10185447 10185701 -34721869 - AluSg SINE Alu -20 290 4 330 181 9 190 chr21 10185882 10185998 -34721572 - Tigger7 DNA MER2_type -1 2486 2392 188 244 0 0 chr21 10186431 10186472 -34721098 - MIR SINE MIR -38 224 184 1134 184 0 10 chr21 10186795 10187050 -34720520 + AluJb SINE Alu 92 344 0 1954 87 77 25 chr21 10187611 10187897 -34719673 + AluSp SINE Alu 1 301 -12 1487 268 95 28 chr21 10187961 10188811 -34718759 + L2 LINE L2 2419 3313 0 475 257 140 6 chr21 10188825 10188996 -34718574 + MLT1L LTR MaLR 414 607 -8 1625 171 20 37 chr21 10189181 10189480 -34718090 - AluJb SINE Alu -18 294 1 2079 98 25 14 chr21 10189481 10189790 -34717780 - AluSx SINE Alu 0 312 1 2084 143 7 0 chr21 10189824 10190131 -34717439 + AluSx SINE Alu 1 309 -3 2033 127 4 0 chr21 10190244 10190520 -34717050 + AluSp SINE Alu 1 277 -36 525 265 51 58 chr21 10191104 10191475 -34716095 - HSREP522 Satellite telomeric -76 368 1 214 311 0 33 chr21 10192683 10192773 -34714797 + G-rich Low_complexity Low_complexity 4 90 0 316 197 0 14 chr21 10193632 10193703 -34713867 - L1 LINE L1 -3308 2838 2769 198 71 0 0 chr21 10193711 10193739 -34713831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1801 138 32 3 chr21 10193739 10194015 -34713555 - AluSx SINE Alu -27 285 2 1727 216 80 9 chr21 10194015 10194479 -34713091 - L1 LINE L1 -2203 3943 3447 1629 234 16 0 chr21 10194481 10194852 -34712718 - MSTB LTR MaLR -49 377 1 248 194 0 30 chr21 10194852 10194919 -34712651 - MSTB-int LTR MaLR 0 1651 1587 3048 190 28 5 chr21 10194924 10195528 -34712042 - MSTB-int LTR MaLR -14 1637 1020 4313 256 31 20 chr21 10195536 10197098 -34710472 - L1PA15-16 LINE L1 -2702 4147 2553 2205 129 0 0 chr21 10197098 10197393 -34710177 + AluSx SINE Alu 1 295 -17 4313 256 31 20 chr21 10197393 10198000 -34709570 - L1PA15-16 LINE L1 -4296 2553 1954 511 327 103 30 chr21 10198084 10198487 -34709083 + L1MC/D LINE L1 5354 5795 -396 39 74 0 0 chr21 10198506 10198587 -34708983 + AT_rich Low_complexity Low_complexity 1 81 0 1459 186 29 22 chr21 10198743 10199018 -34708552 - AluJo SINE Alu -23 289 13 21 0 0 0 chr21 10199161 10199182 -34708388 + AT_rich Low_complexity Low_complexity 1 21 0 2123 131 13 0 chr21 10199184 10199308 -34708262 + AluSq SINE Alu 3 124 -189 351 0 0 0 chr21 10199308 10199347 -34708223 + (CA)n Simple_repeat Simple_repeat 2 40 0 2123 131 13 0 chr21 10199347 10199528 -34708042 + AluSq SINE Alu 124 312 -1 1350 74 0 0 chr21 10200129 10200292 -34707278 - AluSg SINE Alu -147 163 1 2341 61 31 10 chr21 10200310 10200657 -34706913 - AluY SINE Alu 0 311 1 1547 141 0 50 chr21 10200657 10200899 -34706671 + AluJb SINE Alu 67 296 -16 658 111 0 9 chr21 10200908 10201016 -34706554 + L1M4 LINE L1 5346 5452 -732 1673 156 17 44 chr21 10201017 10201151 -34706419 + AluJb SINE Alu 5 141 -171 2072 134 0 0 chr21 10201151 10201428 -34706142 + AluSg SINE Alu 1 277 -33 440 35 17 0 chr21 10201433 10201491 -34706079 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 1673 156 17 44 chr21 10201491 10201645 -34705925 + AluJb SINE Alu 145 291 -21 1936 114 41 28 chr21 10201654 10201944 -34705626 + AluSg SINE Alu 1 294 -16 1045 91 8 0 chr21 10202404 10202536 -34705034 + AluSq/x SINE Alu 4 136 -177 1663 106 0 0 chr21 10202536 10202753 -34704817 + AluY SINE Alu 1 217 -94 468 0 0 0 chr21 10203657 10203709 -34703861 + (GTTTG)n Simple_repeat Simple_repeat 1 52 0 2118 127 0 0 chr21 10203709 10203985 -34703585 - AluSx SINE Alu -31 281 6 1843 78 141 0 chr21 10204703 10204959 -34702611 - AluSq SINE Alu -11 292 1 209 356 67 0 chr21 10204966 10205070 -34702500 - MIR SINE MIR -116 146 36 1974 149 0 19 chr21 10205127 10205443 -34702127 + AluSx SINE Alu 1 310 -2 2264 115 0 3 chr21 10205896 10206201 -34701369 + AluSq SINE Alu 1 304 -9 1891 170 0 13 chr21 10206525 10206837 -34700733 + AluJb SINE Alu 3 310 -2 2022 112 72 0 chr21 10206937 10207213 -34700357 + AluSx SINE Alu 1 296 -16 2007 127 3 10 chr21 10208329 10208621 -34698949 - AluSg SINE Alu -20 290 1 331 174 26 39 chr21 10208857 10209012 -34698558 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 532 126 22 55 chr21 10209023 10209206 -34698364 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 504 158 30 36 chr21 10209221 10209566 -34698004 + (CAGAGA)n Simple_repeat Simple_repeat 1 342 0 2488 68 0 3 chr21 10209624 10209932 -34697638 + AluY SINE Alu 1 307 -4 654 105 26 20 chr21 10210589 10210741 -34696829 + (TAGA)n Simple_repeat Simple_repeat 1 153 0 668 105 22 33 chr21 10210764 10210945 -34696625 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 413 87 48 19 chr21 10210978 10211082 -34696488 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 724 296 65 28 chr21 10211125 10211477 -34696093 - MLT1J LTR MaLR -45 466 102 1905 179 0 3 chr21 10212250 10212609 -34694961 + AluJb SINE Alu 1 358 0 665 330 158 32 chr21 10212830 10213388 -34694182 + L2 LINE L2 2080 2707 -607 227 139 0 0 chr21 10213445 10213481 -34694089 + MLT1A2 LTR MaLR 24 59 -331 1410 185 108 15 chr21 10213485 10213644 -34693926 + MLT1A2 LTR MaLR 21 164 -210 231 36 0 0 chr21 10213644 10213672 -34693898 + (TC)n Simple_repeat Simple_repeat 2 29 0 1410 185 108 15 chr21 10213672 10213836 -34693734 + MLT1A2 LTR MaLR 164 374 0 1814 215 18 56 chr21 10214179 10214677 -34692893 - MLT1D LTR MaLR -6 499 21 282 149 43 0 chr21 10214707 10214754 -34692816 - MLT1D LTR MaLR -455 50 2 256 188 42 0 chr21 10214804 10214852 -34692718 - MLT1J LTR MaLR -455 50 1 319 85 43 0 chr21 10214853 10214900 -34692670 - MLT1D LTR MaLR -455 50 2 294 125 42 0 chr21 10214902 10214950 -34692620 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 10214951 10214999 -34692571 - MLT1D LTR MaLR -455 50 1 334 64 43 0 chr21 10215000 10215047 -34692523 - MLT1D LTR MaLR -455 50 2 310 104 42 0 chr21 10215049 10215097 -34692473 - MLT1D LTR MaLR -455 50 1 331 83 42 0 chr21 10215098 10215146 -34692424 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 10215147 10215195 -34692375 - MLT1D LTR MaLR -455 50 1 338 83 42 0 chr21 10215196 10215244 -34692326 - MLT1D LTR MaLR -455 50 1 291 111 44 0 chr21 10215245 10215290 -34692280 - MLT1D LTR MaLR -456 49 3 318 104 42 0 chr21 10215293 10215341 -34692229 - MLT1D LTR MaLR -455 50 1 307 125 42 0 chr21 10215342 10215390 -34692180 - MLT1D LTR MaLR -455 50 1 348 64 43 0 chr21 10215439 10215486 -34692084 - MLT1D LTR MaLR -456 49 1 292 128 43 0 chr21 10215487 10215534 -34692036 - MLT1D LTR MaLR -456 49 1 316 125 42 0 chr21 10215535 10215583 -34691987 - MLT1D LTR MaLR -455 50 1 335 83 42 0 chr21 10215636 10215684 -34691886 - MLT1D LTR MaLR -455 50 1 329 104 42 0 chr21 10215685 10215733 -34691837 - MLT1D LTR MaLR -455 50 1 239 137 39 59 chr21 10215734 10215785 -34691785 - MLT1D LTR MaLR -455 50 1 325 85 43 0 chr21 10215786 10215833 -34691737 - MLT1D LTR MaLR -455 50 2 561 55 0 0 chr21 10216229 10216302 -34691268 + L1PA3 LINE L1 6080 6152 -3 2059 130 7 0 chr21 10216462 10216763 -34690807 - AluSx SINE Alu -9 303 1 414 180 18 9 chr21 10217131 10217242 -34690328 + CT-rich Low_complexity Low_complexity 2 113 0 * 970 143 0 16 chr21 10217223 10217405 -34690165 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 3506 69 0 0 chr21 10217417 10217865 -34689705 - L1PA8 LINE L1 -15 6157 5710 1255 74 0 0 chr21 10218069 10218217 -34689353 + AluSg SINE Alu 1 148 -162 352 73 55 0 chr21 10218217 10218272 -34689298 - L1PA7 LINE L1 -329 5825 5768 945 138 6 12 chr21 10218272 10218432 -34689138 + L1PA13 LINE L1 5993 6151 -12 191 32 65 0 chr21 10218432 10218463 -34689107 + T-rich Low_complexity Low_complexity 5 37 0 956 107 71 0 chr21 10218476 10218616 -34688954 + AluSg/x SINE Alu 159 308 -4 226 111 0 0 chr21 10218839 10218875 -34688695 - L1PA14 LINE L1 -204 5957 5922 2049 141 0 0 chr21 10218890 10219181 -34688389 - AluSx SINE Alu -21 291 1 2049 144 0 16 chr21 10219206 10219518 -34688052 - AluSx SINE Alu -5 307 1 838 160 53 0 chr21 10219519 10219669 -34687901 - L1PA14 LINE L1 -227 5934 5777 936 138 6 12 chr21 10219678 10219838 -34687732 + L1PA13 LINE L1 5993 6151 -12 253 43 43 21 chr21 10219841 10219888 -34687682 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 502 163 0 43 chr21 10219888 10219966 -34687604 - AluSp/q SINE Alu -30 283 206 2373 91 0 0 chr21 10221802 10222098 -34685472 - AluY SINE Alu -14 297 2 1832 118 0 48 chr21 10222174 10222486 -34685084 - AluSc SINE Alu 0 305 8 622 147 147 0 chr21 10222572 10222694 -34684876 - AluSp/q SINE Alu 0 306 170 455 260 24 0 chr21 10222695 10222785 -34684785 - L1PA16 LINE L1 -46 6120 6025 195 42 0 0 chr21 10222785 10222809 -34684761 + (CCCTG)n Simple_repeat Simple_repeat 4 27 0 455 260 24 0 chr21 10222809 10222845 -34684725 - L1PA16 LINE L1 -141 6025 5991 1503 188 52 42 chr21 10222864 10223172 -34684398 - AluSx SINE Alu -1 311 1 1077 163 25 49 chr21 10223222 10223467 -34684103 - L1PA16 LINE L1 -136 6030 5792 215 137 0 20 chr21 10223859 10223910 -34683660 + (TG)n Simple_repeat Simple_repeat 2 51 0 2130 83 0 11 chr21 10223913 10224190 -34683380 - AluY SINE Alu -37 274 1 1856 86 0 0 chr21 10224200 10224434 -34683136 - AluSx SINE Alu -25 287 54 2165 116 10 0 chr21 10224552 10224883 -34682687 + AluSx SINE Alu 1 334 0 263 253 11 21 chr21 10224888 10224983 -34682587 + L1MB8 LINE L1 5816 5909 -269 2274 98 0 0 chr21 10224983 10225278 -34682292 + AluSx SINE Alu 1 295 -17 2098 113 0 23 chr21 10225280 10225580 -34681990 + AluSg SINE Alu 1 293 -17 2245 109 0 19 chr21 10225582 10225895 -34681675 + AluY SINE Alu 1 307 -4 835 122 35 6 chr21 10226251 10226767 -34680803 + GA-rich Low_complexity Low_complexity 1 531 0 1247 182 0 9 chr21 10227114 10227328 -34680242 - AluJo SINE Alu -11 301 90 842 196 163 48 chr21 10227367 10227501 -34680069 - AluJo SINE Alu -30 282 114 2239 92 14 3 chr21 10227501 10227796 -34679774 + AluY SINE Alu 1 298 -13 842 196 163 48 chr21 10227796 10227870 -34679700 - AluJo SINE Alu -198 114 50 1970 142 4 0 chr21 10228071 10228352 -34679218 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr21 10228354 10228377 -34679193 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2356 99 0 6 chr21 10228835 10229147 -34678423 - AluSx SINE Alu -2 310 1 456 178 25 12 chr21 10229576 10229739 -34677831 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 201 132 0 53 chr21 10229827 10229865 -34677705 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 551 106 70 0 chr21 10229866 10230169 -34677401 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 611 298 6 6 chr21 10230279 10230460 -34677110 - MLT1A1 LTR MaLR 0 365 185 274 254 15 0 chr21 10230490 10230557 -34677013 - MLT1A2 LTR MaLR -98 276 209 340 209 15 0 chr21 10230600 10230667 -34676903 - MLT1A2 LTR MaLR -98 276 209 289 288 12 0 chr21 10230710 10230790 -34676780 - MLT1A2 LTR MaLR -98 276 196 2240 104 0 0 chr21 10230866 10231256 -34676314 - AluSg SINE Alu 0 390 1 234 288 0 0 chr21 10231258 10231324 -34676246 - MLT1A2 LTR MaLR -210 155 90 1701 200 0 3 chr21 10231348 10231653 -34675917 - AluJb SINE Alu -2 310 7 2088 119 3 26 chr21 10231661 10232001 -34675569 - AluSx SINE Alu 0 312 7 2215 114 3 0 chr21 10232009 10232344 -34675226 - AluSx SINE Alu 0 312 1 2398 70 3 10 chr21 10232585 10232883 -34674687 - AluY SINE Alu -10 301 6 2280 74 3 52 chr21 10232887 10233213 -34674357 - AluY SINE Alu -1 310 1 2124 104 7 45 chr21 10233924 10234233 -34673337 + AluSx SINE Alu 1 297 -15 219 192 69 46 chr21 10234300 10234430 -34673140 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 337 183 34 23 chr21 10234474 10234649 -34672921 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 456 169 41 9 chr21 10234703 10235028 -34672542 + (TAGA)n Simple_repeat Simple_repeat 1 335 0 508 144 50 12 chr21 10235057 10235460 -34672110 + (TAGA)n Simple_repeat Simple_repeat 1 418 0 441 159 40 25 chr21 10235471 10235751 -34671819 + (TAGA)n Simple_repeat Simple_repeat 1 284 0 571 145 40 18 chr21 10235791 10236464 -34671106 + (TAGA)n Simple_repeat Simple_repeat 1 687 0 273 29 0 0 chr21 10237753 10237787 -34669783 + (TG)n Simple_repeat Simple_repeat 1 34 0 797 248 103 14 chr21 10239596 10239878 -34667692 + L2 LINE L2 2844 3150 -163 1679 197 0 3 chr21 10240340 10240639 -34666931 - AluJb SINE Alu -14 298 1 7433 170 84 20 chr21 10241274 10242154 -34665416 + L1MA2 LINE L1 3418 4241 -2063 2355 84 0 7 chr21 10242154 10242453 -34665117 - AluY SINE Alu -13 298 2 7433 170 84 20 chr21 10242453 10244081 -34663489 + L1MA2 LINE L1 4241 6099 -205 1198 149 15 0 chr21 10244192 10244393 -34663177 + L1MA2 LINE L1 6101 6304 0 895 222 33 62 chr21 10245243 10245518 -34662052 - MER4B-int LTR ERV1 -5910 848 582 3716 205 25 35 chr21 10245518 10246406 -34661164 + L1MA8 LINE L1 5412 6290 -1 25 51 0 0 chr21 10246470 10246509 -34661061 + AT_rich Low_complexity Low_complexity 1 39 0 2535 41 0 31 chr21 10247491 10247808 -34659762 + AluY SINE Alu 1 307 -4 25 31 0 0 chr21 10248245 10248277 -34659293 + AT_rich Low_complexity Low_complexity 1 32 0 334 255 0 128 chr21 10248586 10248782 -34658788 - MLT1D LTR MaLR -331 174 4 225 0 0 0 chr21 10249578 10249603 -34657967 + (A)n Simple_repeat Simple_repeat 1 25 0 39577 76 7 10 chr21 10249606 10255769 -34651801 + L1PA4 LINE L1 2 6147 -8 3247 215 49 15 chr21 10255790 10255860 -34651710 - L1PA15-16 LINE L1 -3546 3303 3237 826 75 9 0 chr21 10255860 10255967 -34651603 - L1PA4 LINE L1 -2 6153 6046 3247 215 49 15 chr21 10255967 10256927 -34650643 - L1PA15-16 LINE L1 -3612 3237 2249 1930 144 3 0 chr21 10256927 10257218 -34650352 - AluSx SINE Alu -20 292 1 3247 215 49 15 chr21 10257218 10257232 -34650338 - L1PA15-16 LINE L1 -4600 2249 2237 326 275 210 20 chr21 10258487 10258782 -34648788 - L2 LINE L2 -340 2974 2624 211 234 45 147 chr21 10259016 10259256 -34648314 + L2 LINE L2 2816 3014 -258 1552 183 43 0 chr21 10259256 10259513 -34648057 + AluJb SINE Alu 1 268 -44 211 234 45 147 chr21 10259513 10259605 -34647965 + L2 LINE L2 3014 3114 -158 297 196 71 0 chr21 10260462 10260518 -34647052 + FRAM SINE Alu 75 134 -32 505 235 56 72 chr21 10260760 10261096 -34646474 - L2 LINE L2 -219 3053 2725 309 214 0 0 chr21 10261129 10261185 -34646385 - AluJ/monomer SINE Alu -3 299 244 460 214 76 0 chr21 10261186 10261331 -34646239 - L1M4 LINE L1 -3213 2933 2778 574 265 49 65 chr21 10263155 10263297 -34644273 - L1P1 LINE L1 -528 5627 5484 1971 101 44 20 chr21 10263297 10263593 -34643977 - AluSx SINE Alu -7 305 3 574 265 49 65 chr21 10263593 10263968 -34643602 - L1P1 LINE L1 -671 5484 5112 804 265 50 22 chr21 10264202 10264564 -34643006 - L1 LINE L1 -1157 4989 4618 1785 245 46 39 chr21 10264585 10265628 -34641942 - L1MA6 LINE L1 -31 6269 5123 255 143 0 0 chr21 10265720 10265762 -34641808 - LTR23 LTR ERV1 -73 364 323 40 59 0 0 chr21 10265859 10265927 -34641643 + AT_rich Low_complexity Low_complexity 1 68 0 727 239 72 76 chr21 10266025 10266444 -34641126 - L1MA6 LINE L1 -1107 5039 4623 2904 252 23 28 chr21 10266452 10267354 -34640216 - L1MA6 LINE L1 -9 6291 5394 1406 238 36 28 chr21 10267355 10268095 -34639475 - L1P4 LINE L1 -565 5601 4855 2418 77 0 0 chr21 10268423 10268720 -34638850 + AluY SINE Alu 1 297 -14 351 335 45 10 chr21 10268763 10268963 -34638607 + ERVL LTR ERVL 978 1184 -4580 292 260 90 45 chr21 10269543 10269720 -34637850 - LTR33 LTR ERVL -176 345 161 6085 159 56 35 chr21 10269952 10270132 -34637438 - Tigger3b DNA MER2_type -1817 1211 1036 2062 137 26 65 chr21 10270132 10270355 -34637215 + MER1B DNA MER1_type 1 206 -2504 2147 97 35 0 chr21 10270355 10270645 -34636925 + AluSc SINE Alu 1 300 -9 2062 137 26 65 chr21 10270645 10270772 -34636798 + MER1B DNA MER1_type 206 337 0 6085 159 56 35 chr21 10270772 10270832 -34636738 - Tigger3b DNA MER2_type -1992 1036 979 1952 114 7 0 chr21 10270832 10271104 -34636466 + AluSp SINE Alu 33 306 -7 6085 159 56 35 chr21 10271104 10271775 -34635795 - Tigger3b DNA MER2_type -2049 979 266 2172 178 66 15 chr21 10271775 10272186 -34635384 - Tigger2a DNA MER2_type -2 432 1 6085 159 56 35 chr21 10272186 10272456 -34635114 - Tigger3b DNA MER2_type -2762 266 3 2107 106 0 30 chr21 10272599 10272900 -34634670 - AluY SINE Alu -19 292 1 1530 314 65 13 chr21 10273144 10273739 -34633831 + ERVL LTR ERVL 4292 4917 -847 1930 156 3 0 chr21 10275480 10275775 -34631795 - AluSx SINE Alu -14 298 3 682 261 140 21 chr21 10275778 10276389 -34631181 + L1ME LINE L1 5060 5748 -414 1720 212 121 22 chr21 10276389 10276894 -34630676 + L1MCa LINE L1 20 574 -5852 287 211 0 0 chr21 10276897 10276949 -34630621 + L1MCa LINE L1 1515 1566 -4860 1013 155 95 0 chr21 10276950 10277150 -34630420 + L1MCa LINE L1 1692 1910 -4516 1090 171 88 0 chr21 10277243 10277459 -34630111 + Charlie1 DNA MER1_type 578 812 -1949 1983 144 3 0 chr21 10277459 10277765 -34629805 + AluSg SINE Alu 1 307 -3 5530 125 38 21 chr21 10277769 10278964 -34628606 + L1PA16 LINE L1 4951 6166 0 4631 53 0 0 chr21 10279041 10279608 -34627962 + HSATI Satellite Satellite 1 567 -10 1623 151 0 51 chr21 10279608 10279900 -34627670 + AluY SINE Alu 13 289 -22 266 99 59 46 chr21 10279901 10280053 -34627517 + (TA)n Simple_repeat Simple_repeat 1 154 0 447 53 80 42 chr21 10280073 10280340 -34627230 + (TA)n Simple_repeat Simple_repeat 1 277 0 430 144 29 23 chr21 10280341 10280515 -34627055 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 485 82 61 30 chr21 10280494 10280791 -34626779 + (TA)n Simple_repeat Simple_repeat 1 306 0 208 99 70 0 chr21 10280818 10280889 -34626681 + (TA)n Simple_repeat Simple_repeat 2 77 0 1906 53 0 0 chr21 10280889 10281116 -34626454 + HSATI Satellite Satellite 1 227 -350 1240 137 0 1 chr21 11281122 11282304 -33625266 - ALR/Alpha Satellite centromeric 0 1181 1 1322 138 4 0 chr21 11282318 11297432 -33610138 - ALR/Alpha Satellite centromeric 0 15174 1 1294 154 3 2 chr21 11297447 11312440 -33595130 - ALR/Alpha Satellite centromeric 0 17528 32 14243 34 0 0 chr21 11312440 11314925 -33592645 - L1PA2 LINE L1 -1 6154 3670 1294 154 3 2 chr21 11314925 11314958 -33592612 - ALR/Alpha Satellite centromeric -17496 32 1 1217 121 11 0 chr21 11315089 11315271 -33592299 + AluSg/x SINE Alu 127 310 0 215 233 0 0 chr21 11315330 11315373 -33592197 + MIR SINE MIR 199 241 -21 1827 133 7 31 chr21 11315378 11315702 -33591868 - AluSc SINE Alu 0 317 1 1836 130 14 3 chr21 11315854 11316146 -33591424 + AluSq SINE Alu 1 295 -18 2252 79 0 0 chr21 11316148 11316504 -33591066 + AluY SINE Alu 3 358 0 23 0 0 0 chr21 11316824 11316847 -33590723 + AT_rich Low_complexity Low_complexity 1 23 0 29 60 0 0 chr21 11317450 11317500 -33590070 + AT_rich Low_complexity Low_complexity 1 50 0 1935 127 0 65 chr21 11317952 11318275 -33589295 - AluSg SINE Alu -8 302 1 1349 169 115 0 chr21 11318322 11318583 -33588987 - AluSq SINE Alu -12 291 1 2177 122 0 3 chr21 11318605 11318916 -33588654 - AluY SINE Alu 0 311 2 1878 168 7 0 chr21 11318956 11319259 -33588311 - AluSx SINE Alu -7 305 1 588 303 34 14 chr21 11320066 11320274 -33587296 - LTR16B LTR ERVL -78 386 175 273 29 0 0 chr21 11320634 11320673 -33586897 + (TG)n Simple_repeat Simple_repeat 1 73 0 273 29 0 0 chr21 11320673 11320707 -33586863 + (TG)n Simple_repeat Simple_repeat 2 35 0 508 340 58 29 chr21 11320897 11321277 -33586293 - ERVL LTR ERVL -643 4842 4452 251 170 38 19 chr21 11321278 11321331 -33586239 - MLT1F LTR MaLR -83 459 406 930 341 76 31 chr21 11321415 11322306 -33585264 - ERVL LTR ERVL -1049 3947 3159 426 352 46 9 chr21 11322311 11322527 -33585043 - ERVL LTR ERVL -2442 3322 3099 2084 102 0 14 chr21 11322735 11323020 -33584550 + AluY SINE Alu 20 300 -11 1571 256 157 14 chr21 11323023 11323786 -33583784 + L1ME2 LINE L1 5285 6156 -8 236 241 9 93 chr21 11324620 11324728 -33582842 - MIR SINE MIR -44 218 120 2273 97 0 0 chr21 11326011 11326310 -33581260 - AluY SINE Alu -8 303 5 2051 107 45 0 chr21 11326702 11326992 -33580578 + AluSq SINE Alu 1 303 -10 998 81 0 0 chr21 11327148 11327271 -33580299 + AluY SINE Alu 12 134 -177 1516 183 51 3 chr21 11327271 11327566 -33580004 + AluSx SINE Alu 1 309 -3 1970 159 0 0 chr21 11328577 11328879 -33578691 - AluSx SINE Alu 0 312 11 2118 121 3 3 chr21 11329630 11329928 -33577642 + AluSg SINE Alu 1 298 -12 1137 138 6 0 chr21 11330496 11330663 -33576907 + AluSg/x SINE Alu 129 296 -16 512 230 14 0 chr21 11330936 11331075 -33576495 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 2073 130 17 3 chr21 11331314 11331613 -33575957 + AluSg SINE Alu 1 303 -7 28 111 0 0 chr21 11331744 11331870 -33575700 + AT_rich Low_complexity Low_complexity 1 126 0 2168 114 7 0 chr21 11332250 11332549 -33575021 - AluY SINE Alu -10 301 1 2177 121 6 10 chr21 11332614 11332928 -33574642 - AluSp SINE Alu 0 313 1 1820 157 44 0 chr21 11333273 11333566 -33574004 - AluSx SINE Alu -6 306 1 2193 115 0 13 chr21 11333588 11333893 -33573677 - AluY SINE Alu -8 303 3 670 276 89 22 chr21 11334016 11334241 -33573329 + MIR SINE MIR 3 242 -20 5746 154 61 24 chr21 11334271 11335176 -33572394 - Tigger3b DNA MER2_type -1797 1231 361 2044 143 0 3 chr21 11335176 11335483 -33572087 + AluSx SINE Alu 1 306 -6 2598 36 3 0 chr21 11335490 11335791 -33571779 + AluY SINE Alu 1 302 -9 5746 154 61 24 chr21 11335791 11336064 -33571506 - Tigger3b DNA MER2_type -2672 356 1 209 389 36 7 chr21 11336096 11336235 -33571335 + L2 LINE L2 2386 2528 -786 22 0 0 0 chr21 11336679 11336701 -33570869 + AT_rich Low_complexity Low_complexity 1 22 0 245 27 54 0 chr21 11337161 11337198 -33570372 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2050 136 0 3 chr21 11337624 11337919 -33569651 + AluSc SINE Alu 3 296 -13 876 181 13 7 chr21 11338276 11338431 -33569139 - AluSg/x SINE Alu -21 289 134 2083 152 0 9 chr21 11338434 11338612 -33568958 - AluSx SINE Alu 0 312 137 1660 116 0 0 chr21 11338612 11338827 -33568743 - AluSg SINE Alu -95 215 1 2083 152 0 9 chr21 11338827 11338963 -33568607 - AluSx SINE Alu -175 137 1 3494 206 30 75 chr21 11339032 11340047 -33567523 + LTR5 LTR ERVK 1 969 0 396 239 33 38 chr21 11341483 11341667 -33565903 - LTR37B LTR ERV1 -24 444 262 2039 116 20 13 chr21 11341667 11341969 -33565601 + AluY SINE Alu 1 304 -7 3610 199 39 39 chr21 11341980 11342261 -33565309 + L1MB4 LINE L1 4905 5184 -996 2065 121 36 0 chr21 11342261 11342542 -33565028 + AluSg SINE Alu 1 291 -19 3610 199 39 39 chr21 11342542 11343544 -33564026 + L1MB4 LINE L1 5184 6180 0 440 264 0 7 chr21 11343744 11343884 -33563686 - LTR37B LTR ERV1 -200 268 130 2461 59 7 0 chr21 11344079 11344382 -33563188 - AluY SINE Alu -6 305 1 1493 185 102 10 chr21 11344725 11345039 -33562531 + MER61A LTR ERV1 1 343 0 2265 105 3 0 chr21 11345574 11345878 -33561692 - AluSc SINE Alu 0 309 5 2129 176 91 36 chr21 11346356 11346883 -33560687 - L1MA9 LINE L1 -2 6310 5755 513 252 25 0 chr21 11346891 11347050 -33560520 + L1MC/D LINE L1 5254 5416 -928 563 255 89 19 chr21 11347059 11347449 -33560121 + L1MC3 LINE L1 1713 2238 -4369 304 248 75 99 chr21 11347477 11347638 -33559932 + L1MC3 LINE L1 2167 2323 -4103 1490 182 68 0 chr21 11347638 11347957 -33559613 + AluSx SINE Alu 1 337 0 3160 249 65 18 chr21 11347980 11349344 -33558226 + L1MC3 LINE L1 2936 4363 -2063 2387 197 170 81 chr21 11349379 11349491 -33558079 + L1MC3 LINE L1 5828 5929 -2136 1531 131 6 131 chr21 11349491 11349834 -33557736 - AluSx SINE Alu -12 300 1 2387 197 170 81 chr21 11349834 11350152 -33557418 + L1MC3 LINE L1 5929 6217 -1848 2303 72 7 13 chr21 11350152 11350457 -33557113 - AluY SINE Alu -8 303 1 2387 197 170 81 chr21 11350457 11350681 -33556889 + L1MC3 LINE L1 6217 6419 -1646 2279 100 0 19 chr21 11350681 11350990 -33556580 + AluSq SINE Alu 9 311 -2 2387 197 170 81 chr21 11350990 11351413 -33556157 + L1MC3 LINE L1 6419 7004 -1061 292 133 67 17 chr21 11351685 11351745 -33555825 - AluJb SINE Alu -7 295 233 398 182 0 0 chr21 11351752 11351829 -33555741 + L1MC/D LINE L1 5463 5539 -794 1157 222 16 12 chr21 11351830 11352073 -33555497 - AluJb SINE Alu -68 244 1 441 297 52 124 chr21 11352242 11352969 -33554601 + L1M2 LINE L1 473 1147 -5702 2249 65 33 29 chr21 11354498 11354833 -33552737 + AluY SINE Alu 1 311 0 1983 135 10 0 chr21 11354834 11355130 -33552440 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr21 11356308 11356329 -33551241 + AT_rich Low_complexity Low_complexity 1 21 0 270 252 21 42 chr21 11357142 11357285 -33550285 - MER104 DNA Tc2 -37 143 4 515 287 82 49 chr21 11357378 11357634 -33549936 - MIR SINE MIR -1 261 2 21 57 0 0 chr21 11358029 11358064 -33549506 + AT_rich Low_complexity Low_complexity 1 35 0 299 305 19 0 chr21 11358698 11358803 -33548767 + MER102a DNA MER1_type 223 329 -1 22 70 0 0 chr21 11358858 11358901 -33548669 + AT_rich Low_complexity Low_complexity 1 43 0 2201 126 3 7 chr21 11359311 11359621 -33547949 - AluSc SINE Alu 0 309 1 259 312 91 0 chr21 11360155 11360232 -33547338 - L2 LINE L2 -50 3222 3139 22 56 0 0 chr21 11360642 11360678 -33546892 + AT_rich Low_complexity Low_complexity 1 36 0 1043 185 6 6 chr21 11360975 11361153 -33546417 + AluSx SINE Alu 2 179 -133 487 257 0 0 chr21 11362890 11362995 -33544575 + U6 snRNA snRNA 1 105 -2 31 58 0 0 chr21 11363440 11363492 -33544078 + AT_rich Low_complexity Low_complexity 1 52 0 605 186 0 0 chr21 11363663 11363765 -33543805 - AluJ/FLAM SINE Alu -210 102 1 285 353 80 0 chr21 11363845 11363995 -33543575 - MIR SINE MIR -44 218 57 39 38 0 0 chr21 11364754 11364807 -33542763 + AT_rich Low_complexity Low_complexity 1 53 0 45 105 0 0 chr21 11364928 11365099 -33542471 + AT_rich Low_complexity Low_complexity 1 171 0 364 141 0 0 chr21 11365100 11365166 -33542404 - FLAM SINE Alu -8 125 68 1421 192 44 64 chr21 11365218 11365665 -33541905 - Tigger2 DNA MER2_type 0 2718 1 181 373 85 17 chr21 11366196 11366314 -33541256 - L2 LINE L2 -2 3270 3145 229 200 11 56 chr21 11366433 11366523 -33541047 + (TTA)n Simple_repeat Simple_repeat 2 87 0 1973 132 7 19 chr21 11366668 11366978 -33540592 + AluSx SINE Alu 3 308 -4 2294 179 72 12 chr21 11367269 11367783 -33539787 + LTR10A LTR ERV1 3 547 -62 24127 180 34 46 chr21 11367821 11369713 -33537857 + HERVI LTR ERV1 26 1940 -5845 2277 98 0 3 chr21 11369713 11370008 -33537562 - AluY SINE Alu -17 294 1 24127 180 34 46 chr21 11370008 11373365 -33534205 + HERVI LTR ERV1 1940 5210 -2575 7171 237 14 35 chr21 11373363 11375292 -33532278 + LTR10A-int LTR ERV1 4758 6647 -2 * 2283 168 72 12 chr21 11375366 11375881 -33531689 + LTR10A LTR ERV1 1 547 0 455 303 107 4 chr21 11376520 11376754 -33530816 - MLT1L LTR MaLR -221 394 137 820 270 44 0 chr21 11376950 11377154 -33530416 - MER58A DNA MER1_type 0 224 12 26 50 0 0 chr21 11377366 11377406 -33530164 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr21 11377474 11377497 -33530073 + AT_rich Low_complexity Low_complexity 1 23 0 335 342 97 38 chr21 11377687 11378026 -33529544 - L2 LINE L2 -924 2390 2032 1186 229 86 30 chr21 11378298 11378914 -33528656 - L1MDa LINE L1 -3558 2982 2333 518 256 64 0 chr21 11378954 11379110 -33528460 - L1MDa LINE L1 -4287 2434 2269 237 238 50 56 chr21 11379260 11379420 -33528150 - L1MDa LINE L1 -5265 1456 1298 * 706 326 112 45 chr21 11379406 11380068 -33527502 - L1MDa LINE L1 -5651 1070 365 337 357 88 43 chr21 11380076 11380404 -33527166 + L2 LINE L2 2930 3272 0 2345 75 7 16 chr21 11380560 11380867 -33526703 + AluY SINE Alu 1 304 -7 241 287 99 0 chr21 11381160 11381341 -33526229 - L1ME LINE L1 -283 5838 5640 31 0 0 0 chr21 11381518 11381549 -33526021 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 11381686 11381708 -33525862 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr21 11381839 11381878 -33525692 + AT_rich Low_complexity Low_complexity 1 39 0 1622 223 48 9 chr21 11382434 11382651 -33524919 - L1M4 LINE L1 -464 5720 5513 2086 66 0 4 chr21 11382651 11382910 -33524660 - AluY SINE Alu -53 258 1 1622 223 48 9 chr21 11382910 11383364 -33524206 - L1M4 LINE L1 -671 5513 5023 1382 186 8 11 chr21 11383366 11383629 -33523941 + L1PB4 LINE L1 5883 6144 -12 812 177 83 26 chr21 11383681 11383873 -33523697 - L1MB4 LINE L1 -2 6178 5976 305 260 0 0 chr21 11383877 11383954 -33523616 + MER3 DNA MER1_type 133 209 0 381 308 124 22 chr21 11384040 11384455 -33523115 + L2 LINE L2 2661 3124 -189 874 185 25 0 chr21 11384477 11384634 -33522936 - AluJo SINE Alu -32 280 120 304 309 149 30 chr21 11384634 11384802 -33522768 + L2 LINE L2 3125 3312 -1 5842 129 25 11 chr21 11384915 11385414 -33522156 - L1P LINE L1 -2353 3793 3302 2175 121 0 0 chr21 11385414 11385711 -33521859 - AluSg SINE Alu -13 297 1 5842 129 25 11 chr21 11385711 11386184 -33521386 - L1P LINE L1 -2844 3302 2808 2773 91 0 0 chr21 11386202 11386574 -33520996 + L1PA8 LINE L1 5788 6159 -13 1462 279 84 23 chr21 11386599 11387347 -33520223 + L1M4 LINE L1 4496 5289 -857 14959 47 2 1 chr21 11387384 11390022 -33517548 + L1PA5 LINE L1 3507 6145 -9 1984 104 32 26 chr21 11390812 11391121 -33516449 + AluY SINE Alu 1 311 0 1710 148 51 46 chr21 11391634 11392006 -33515564 + THE1C LTR MaLR 2 375 0 359 215 0 0 chr21 11392006 11392071 -33515499 + THE1C-int LTR MaLR 1 65 -1515 6522 156 18 7 chr21 11392071 11393215 -33514355 + THE1C-int LTR MaLR 215 1422 -158 310 173 0 0 chr21 11394290 11394342 -33513228 + MER51D LTR ERV1 500 551 -106 1948 136 3 10 chr21 11394454 11394755 -33512815 + AluSq SINE Alu 1 299 -14 7741 98 4 1 chr21 11395319 11396387 -33511183 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr21 11396442 11396484 -33511086 + AT_rich Low_complexity Low_complexity 1 42 0 2000 138 0 0 chr21 11396586 11396877 -33510693 + AluSq SINE Alu 1 291 -22 2806 21 0 0 chr21 11397221 11397548 -33510022 - L1PA2 LINE L1 0 6155 5829 3522 30 0 5 chr21 11397548 11397977 -33509593 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr21 11398092 11398113 -33509457 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 11398253 11398281 -33509289 + AT_rich Low_complexity Low_complexity 1 28 0 2337 82 0 3 chr21 11398485 11398791 -33508779 - AluY SINE Alu -6 305 1 1200 126 6 0 chr21 11400114 11400288 -33507282 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr21 11400608 11400653 -33506917 + AT_rich Low_complexity Low_complexity 1 45 0 1026 152 162 0 chr21 11401282 11401480 -33506090 + MER30 DNA MER1_type 1 230 0 3650 203 39 17 chr21 11401689 11402507 -33505063 - L1PA16 LINE L1 -14 6152 5317 5229 273 48 16 chr21 11402510 11402966 -33504604 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr21 11402966 11402988 -33504582 + (TG)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr21 11402988 11404443 -33503127 - L1 LINE L1 -1304 4842 3310 4118 230 80 30 chr21 11404454 11404649 -33502921 + L1MA8 LINE L1 3897 4081 -2219 2085 116 3 0 chr21 11404649 11404943 -33502627 - AluY SINE Alu -16 295 1 4118 230 80 30 chr21 11404943 11406685 -33500885 + L1MA8 LINE L1 4081 5941 -359 565 213 173 4 chr21 11406696 11406921 -33500649 + L1MA8 LINE L1 6025 6287 -4 2054 136 0 0 chr21 11407664 11407951 -33499619 - AluSc SINE Alu -16 293 7 1928 156 0 7 chr21 11408644 11408951 -33498619 + AluSg SINE Alu 5 309 -1 849 162 37 11 chr21 11409585 11409776 -33497794 + L1MA3 LINE L1 6110 6305 0 357 313 143 24 chr21 11414257 11414593 -33492977 + L1MB2 LINE L1 2259 2634 -4862 586 288 114 64 chr21 11414595 11414623 -33492947 + L1MB2 LINE L1 2471 2496 -5069 1251 232 21 7 chr21 11414623 11414907 -33492663 + AluJb SINE Alu 1 288 -24 586 288 114 64 chr21 11414907 11416345 -33491225 + L1MB2 LINE L1 2496 3861 -3704 2126 112 10 0 chr21 11416345 11416650 -33490920 + AluY SINE Alu 1 308 -3 586 288 114 64 chr21 11416650 11416675 -33490895 + L1MB2 LINE L1 3861 3883 -3682 1788 146 33 0 chr21 11416675 11416949 -33490621 + AluSx SINE Alu 12 294 -18 586 288 114 64 chr21 11416949 11417239 -33490331 + L1MB2 LINE L1 3883 4320 -3245 737 264 52 18 chr21 11417242 11417571 -33489999 + L1MB2 LINE L1 5930 6269 -1296 1111 267 54 43 chr21 11417574 11417597 -33489973 + L1MB2 LINE L1 7094 7115 -475 2131 108 0 7 chr21 11417597 11417893 -33489677 - AluY SINE Alu -17 294 1 1111 267 54 43 chr21 11417893 11418037 -33489533 + L1MB2 LINE L1 7115 7256 -334 1835 143 17 10 chr21 11418037 11418330 -33489240 + AluSp SINE Alu 1 295 -18 1111 267 54 43 chr21 11418330 11418626 -33488944 + L1MB2 LINE L1 7256 7563 -27 369 264 26 109 chr21 11419017 11419039 -33488531 + L1MB2 LINE L1 2360 2382 -5185 2232 78 0 3 chr21 11419039 11419366 -33488204 + AluY SINE Alu 1 326 0 369 264 26 109 chr21 11419366 11419535 -33488035 + L1MB2 LINE L1 2382 2536 -5031 270 254 9 45 chr21 11419575 11419685 -33487885 + L1MB2 LINE L1 2887 2992 -4573 511 259 0 9 chr21 11419686 11419802 -33487768 + FLAM_C SINE Alu 1 115 -28 1984 125 0 4 chr21 11420060 11420376 -33487194 + AluSg1 SINE Alu 3 317 0 509 271 66 35 chr21 11420386 11420752 -33486818 + L1MB2 LINE L1 3269 3645 -3922 478 185 0 0 chr21 11420836 11420917 -33486653 + AluJ/FLAM SINE Alu 4 84 -228 784 285 40 53 chr21 11420917 11421290 -33486280 + L1MB2 LINE L1 3657 4034 -3531 1931 218 36 2 chr21 11421290 11421702 -33485868 - MSTB LTR MaLR 0 426 1 784 285 40 53 chr21 11421702 11421832 -33485738 + L1MB2 LINE L1 4034 4164 -3401 1327 206 33 11 chr21 11421832 11422108 -33485462 + AluJb SINE Alu 1 282 -30 784 285 40 53 chr21 11422108 11422259 -33485311 + L1MB2 LINE L1 4164 4303 -3262 1280 276 86 20 chr21 11422389 11423224 -33484346 + L1MB2 LINE L1 6095 6983 -607 22 0 0 0 chr21 11423243 11423265 -33484305 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr21 11423311 11423351 -33484219 + AT_rich Low_complexity Low_complexity 1 40 0 324 124 66 0 chr21 11423492 11423629 -33483941 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 125 62 0 chr21 11423646 11423694 -33483876 + (TA)n Simple_repeat Simple_repeat 2 52 0 1681 202 51 33 chr21 11423694 11424109 -33483461 + L1MB2 LINE L1 7092 7519 -71 1226 243 7 10 chr21 11424109 11424397 -33483173 - AluJo SINE Alu -24 288 2 1681 202 51 33 chr21 11424397 11424452 -33483118 + L1MB2 LINE L1 7519 7572 -18 1868 103 4 8 chr21 11424670 11424932 -33482638 + AluSq SINE Alu 1 261 -52 481 353 20 5 chr21 11424941 11425142 -33482428 + L1MA9 LINE L1 348 551 -5404 451 288 31 18 chr21 11425273 11425436 -33482134 + L1MA9 LINE L1 701 865 -5090 3851 232 52 17 chr21 11425441 11427559 -33480011 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr21 11427634 11427663 -33479907 + AT_rich Low_complexity Low_complexity 1 29 0 209 413 0 0 chr21 11428116 11428191 -33479379 - L2 LINE L2 -498 2816 2742 370 342 161 0 chr21 11429437 11429598 -33477972 - MER5A DNA MER1_type -1 188 2 500 216 92 60 chr21 11429744 11429962 -33477608 + L1MC4 LINE L1 7281 7505 -537 2197 98 0 29 chr21 11430294 11430609 -33476961 - AluSx SINE Alu -6 306 1 233 338 162 7 chr21 11431463 11431611 -33475959 - MER5A DNA MER1_type 0 189 19 257 216 18 108 chr21 11431828 11431939 -33475631 - MIR SINE MIR -9 253 153 1951 127 3 3 chr21 11432023 11432306 -33475264 - AluSp SINE Alu -30 283 1 2370 174 16 5 chr21 11434030 11434462 -33473108 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr21 11434952 11435380 -33472190 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr21 11436286 11436581 -33470989 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr21 11436618 11436925 -33470645 - AluSp SINE Alu -8 305 1 22 0 0 0 chr21 11437263 11437285 -33470285 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr21 11437285 11437447 -33470123 - L1PA4 LINE L1 -1 6154 5996 695 131 5 0 chr21 11437452 11447063 -33460507 - CER Satellite Satellite 0 9650 1 40398 56 3 2 chr21 11447086 11453238 -33454332 + L1PA4 LINE L1 9 6164 0 328 272 108 52 chr21 11453321 11453534 -33454036 + L1MDa LINE L1 1514 1738 -4802 252 300 70 19 chr21 11453582 11453792 -33453778 + L1MDa LINE L1 1657 2080 -4641 21 0 0 0 chr21 11453941 11453962 -33453608 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 11454078 11454102 -33453468 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr21 11454356 11454485 -33453085 + L1MEc LINE L1 55 185 -6211 731 320 64 63 chr21 11454610 11455490 -33452080 + L1MEc LINE L1 351 1222 -4983 765 150 23 0 chr21 11455571 11455704 -33451866 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr21 11456969 11457042 -33450528 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr21 11457076 11457458 -33450112 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr21 11457458 11457737 -33449833 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr21 11457737 11457768 -33449802 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr21 11458161 11458196 -33449374 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr21 11458223 11458262 -33449308 + AT_rich Low_complexity Low_complexity 1 39 0 461 246 144 5 chr21 11458748 11458935 -33448635 + MER20 DNA MER1_type 4 216 -3 1775 163 58 21 chr21 11459075 11459504 -33448066 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr21 11459688 11460238 -33447332 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr21 11460804 11460856 -33446714 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr21 11461013 11461165 -33446405 + (TA)n Simple_repeat Simple_repeat 2 154 0 26 0 0 0 chr21 11461280 11461306 -33446264 + AT_rich Low_complexity Low_complexity 1 26 0 13436 40 1 0 chr21 11461394 11463138 -33444432 - L1PA2 LINE L1 -1961 4185 2440 9971 31 0 2 chr21 11463138 11465105 -33442465 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr21 11465105 11465134 -33442436 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr21 11465201 11465222 -33442348 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1236 253 46 10 chr21 11465938 11466353 -33441217 - MER54A LTR ERVL 0 901 472 2072 118 74 15 chr21 11466391 11466729 -33440841 - THE1B LTR MaLR 0 364 7 1499 214 51 2 chr21 11466738 11467131 -33440439 - MER54A LTR ERVL -489 412 1 1600 209 0 10 chr21 11468306 11468608 -33438962 - AluJo SINE Alu -3 309 11 1303 235 47 72 chr21 11469595 11469837 -33437733 - MLT1D LTR MaLR 0 505 258 2150 102 7 7 chr21 11469837 11470130 -33437440 - AluSc SINE Alu -16 293 1 1303 235 47 72 chr21 11470130 11470401 -33437169 - MLT1D LTR MaLR -247 258 5 472 213 22 0 chr21 11470496 11470632 -33436938 + GA-rich Low_complexity Low_complexity 2 140 0 1749 242 37 69 chr21 11470642 11471236 -33436334 + MER77 LTR ERV1 25 599 -6 813 271 65 23 chr21 11472372 11473050 -33434520 - L1MEc LINE L1 -3483 2732 2046 3285 243 41 30 chr21 11473050 11473988 -33433582 + Tigger6a DNA MER2_type 2 955 -642 1731 192 3 7 chr21 11473988 11474295 -33433275 - AluJb SINE Alu -6 306 1 3285 243 41 30 chr21 11474295 11474426 -33433144 + Tigger6a DNA MER2_type 955 1083 0 813 271 65 23 chr21 11474426 11474503 -33433067 - L1MEc LINE L1 -4169 2046 1974 4963 170 8 22 chr21 11474551 11475727 -33431843 + L1PA16 LINE L1 5007 6165 -1 715 278 104 101 chr21 11475729 11475907 -33431663 - L1MEc LINE L1 -4413 1983 1807 2321 114 0 0 chr21 11475907 11476214 -33431356 - AluSg SINE Alu -3 307 1 715 278 104 101 chr21 11476214 11476295 -33431275 - L1MEc LINE L1 -4589 1807 1728 3433 29 0 17 chr21 11476295 11476715 -33430855 + L1PA4 LINE L1 5740 6152 -3 715 278 104 101 chr21 11476715 11477202 -33430368 - L1MEc LINE L1 -4668 1728 1079 835 329 65 16 chr21 11477214 11477943 -33429627 - L1MEc LINE L1 -5483 913 150 385 352 69 30 chr21 11478060 11478395 -33429175 - HAL1b LINE L1 -963 385 38 1351 209 21 78 chr21 11479941 11480328 -33427242 - MLT1A1 LTR MaLR 0 365 1 1990 140 64 3 chr21 11480462 11480805 -33426765 + THE1B LTR MaLR 1 364 0 1872 138 32 11 chr21 11481039 11481322 -33426248 - AluSg SINE Alu -21 289 1 306 338 29 43 chr21 11481426 11481565 -33426005 + MER5A DNA MER1_type 52 188 -1 1112 72 0 0 chr21 11482357 11482496 -33425074 - AluY SINE Alu -17 294 156 243 0 0 0 chr21 11483629 11483656 -33423914 + (T)n Simple_repeat Simple_repeat 1 27 0 320 303 113 21 chr21 11484673 11484911 -33422659 + MIR SINE MIR 3 262 0 2461 69 0 10 chr21 11485334 11485637 -33421933 + AluY SINE Alu 1 300 -11 195 313 15 30 chr21 11485918 11485985 -33421585 + MIR SINE MIR 182 247 -15 304 270 40 43 chr21 11486196 11486401 -33421169 + MIR SINE MIR 8 262 0 201 176 0 0 chr21 11487807 11487841 -33419729 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2105 67 0 39 chr21 11487899 11488184 -33419386 - AluY SINE Alu 0 311 38 189 0 0 0 chr21 11488771 11488792 -33418778 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1117 243 73 64 chr21 11488823 11489271 -33418299 - MLT1C LTR MaLR -5 462 3 1987 201 8 2 chr21 11489679 11490077 -33417493 + L1PA16 LINE L1 5764 6163 -3 264 187 67 27 chr21 11490081 11490156 -33417414 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr21 11492371 11492405 -33415165 + (CA)n Simple_repeat Simple_repeat 1 34 0 4837 95 28 0 chr21 11492682 11493183 -33414387 - L1PA13 LINE L1 -7 6156 5627 2561 107 0 27 chr21 11493183 11493557 -33414013 + THE1B LTR MaLR 1 364 0 4837 95 28 0 chr21 11493557 11493778 -33413792 - L1PA13 LINE L1 -536 5627 5414 2578 188 13 15 chr21 11494158 11494845 -33412725 - L1M4 LINE L1 -405 6277 5592 709 233 28 40 chr21 11494864 11495117 -33412453 - L1M4 LINE L1 -2191 4453 4204 5117 188 15 20 chr21 11495122 11496696 -33410874 - L1PA16 LINE L1 -5 6864 5302 * 9698 118 17 29 chr21 11496690 11498156 -33409414 + THE1B-int LTR MaLR 133 1580 0 2539 100 5 24 chr21 11498156 11498527 -33409043 + THE1B LTR MaLR 1 364 0 263 231 22 88 chr21 11498538 11498629 -33408941 + L1PA15-16 LINE L1 1112 1196 -5653 * 6298 226 19 8 chr21 11498580 11500006 -33407564 - L1PA16 LINE L1 -5592 1257 5 603 219 103 0 chr21 11500021 11500176 -33407394 - L1M4 LINE L1 -2448 4196 4026 4601 258 73 45 chr21 11500231 11503045 -33404525 - L1M4c LINE L1 -3653 2991 2 305 319 34 8 chr21 11504084 11504203 -33403367 + L2 LINE L2 3192 3313 0 21 89 0 0 chr21 11504287 11504343 -33403227 + AT_rich Low_complexity Low_complexity 1 56 0 262 331 24 24 chr21 11504400 11504524 -33403046 - MIR SINE MIR -110 152 29 346 320 138 57 chr21 11504656 11505134 -33402436 - MLT1F LTR MaLR -8 534 18 238 255 89 76 chr21 11505208 11505365 -33402205 + MIR SINE MIR 60 218 -44 827 319 88 0 chr21 11506128 11506448 -33401122 - L2 LINE L2 -1646 1668 1321 656 302 32 29 chr21 11506543 11506821 -33400749 + MLT1K LTR MaLR 300 578 -10 366 274 61 17 chr21 11506929 11507058 -33400512 + MIR SINE MIR 37 170 -63 363 319 48 24 chr21 11507054 11507220 -33400350 - MIR SINE MIR -30 232 63 * 268 297 22 72 chr21 11507242 11507380 -33400190 - MER94 DNA DNA 0 134 4 1140 282 96 14 chr21 11507380 11507795 -33399775 - LTR16A LTR ERVL -1 449 1 2314 64 3 14 chr21 11507869 11508165 -33399405 - AluY SINE Alu -18 293 1 22 35 0 0 chr21 11508328 11508357 -33399213 + AT_rich Low_complexity Low_complexity 1 29 0 2545 183 55 6 chr21 11508973 11509465 -33398105 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr21 11509625 11509650 -33397920 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3348 94 78 166 chr21 11510658 11511412 -33396158 - LTR12 LTR ERV1 0 688 1 709 213 38 47 chr21 11511626 11511861 -33395709 - pTR5 LTR ERV1 -1463 975 743 2290 68 0 40 chr21 11511910 11512232 -33395338 + AluY SINE Alu 1 309 -2 27 49 0 0 chr21 11513508 11513549 -33394021 + AT_rich Low_complexity Low_complexity 1 41 0 229 152 22 0 chr21 11514559 11514605 -33392965 - HAL1 LINE L1 -134 2373 2327 257 209 22 143 chr21 11514615 11514706 -33392864 + MER77 LTR ERV1 11 90 -515 2629 174 99 36 chr21 11515519 11516184 -33391386 + MER39 LTR ERV1 1 707 0 366 333 57 13 chr21 11516418 11516577 -33390993 - L2 LINE L2 -329 2984 2819 497 223 0 7 chr21 11516714 11516902 -33390668 + MER58A DNA MER1_type 1 223 -1 1443 201 14 10 chr21 11517261 11517554 -33390016 - AluJb SINE Alu -16 296 3 33 43 0 0 chr21 11518196 11518243 -33389327 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr21 11520442 11520479 -33387091 + (TG)n Simple_repeat Simple_repeat 2 38 0 4099 190 33 21 chr21 11521102 11522671 -33384899 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr21 11522726 11522778 -33384792 + AT_rich Low_complexity Low_complexity 1 52 0 2474 65 0 3 chr21 11522805 11523115 -33384455 - AluY SINE Alu -2 309 1 2743 13 0 3 chr21 11523426 11523737 -33383833 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr21 11524562 11524603 -33382967 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr21 11525253 11525283 -33382287 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr21 11525400 11525438 -33382132 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr21 11525536 11525908 -33381662 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr21 11525933 11526330 -33381240 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr21 11526406 11526579 -33380991 + CT-rich Low_complexity Low_complexity 3 177 0 247 368 40 8 chr21 11526667 11526792 -33380778 - L2 LINE L2 -2 3270 3142 311 0 26 0 chr21 11527144 11527183 -33380387 + (TA)n Simple_repeat Simple_repeat 1 40 0 5438 239 62 26 chr21 11527184 11529203 -33378367 - L1M4 LINE L1 -1355 4791 2700 395 276 94 0 chr21 11529208 11529378 -33378192 - L1M4 LINE L1 -3488 2658 2473 2665 184 4 2 chr21 11529436 11529921 -33377649 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr21 11530062 11530216 -33377354 + L1M4 LINE L1 6 158 -6384 9714 198 43 26 chr21 11530251 11531025 -33376545 - L1MA4 LINE L1 -738 5567 4807 2076 101 18 4 chr21 11531025 11531326 -33376244 - AluSg SINE Alu 0 305 1 9714 198 43 26 chr21 11531326 11533366 -33374204 - L1MA4 LINE L1 -1498 4807 2131 502 271 54 0 chr21 11533479 11533645 -33373925 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr21 11533665 11533833 -33373737 - L1M4 LINE L1 -1281 4865 4690 2787 247 71 10 chr21 11533845 11534489 -33373081 - L1MB4 LINE L1 -180 6000 5396 2013 121 0 0 chr21 11534489 11534769 -33372801 - AluSq SINE Alu -31 282 3 2787 247 71 10 chr21 11534769 11535693 -33371877 - L1MB4 LINE L1 -784 5396 4352 1160 265 13 13 chr21 11535683 11536057 -33371513 - L1MB4 LINE L1 -2413 3733 3360 * 2031 126 0 3 chr21 11536619 11536905 -33370665 - AluSq SINE Alu -28 285 1 21 0 0 0 chr21 11536996 11537017 -33370553 + AT_rich Low_complexity Low_complexity 1 21 0 240 184 0 0 chr21 11537029 11537078 -33370492 + (CA)n Simple_repeat Simple_repeat 1 49 0 550 252 47 65 chr21 11537078 11537292 -33370278 - MIR SINE MIR -17 245 36 791 244 72 9 chr21 11537405 11537626 -33369944 - MER46A DNA MER2_type -1 235 1 1890 154 0 24 chr21 11537867 11538165 -33369405 + AluSx SINE Alu 1 291 -21 183 42 0 0 chr21 11538168 11538192 -33369378 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2191 144 126 5 chr21 11539541 11539984 -33367586 - L1MA4 LINE L1 -3 6297 5801 * 2229 145 36 3 chr21 11539983 11540206 -33367364 + L1M1 LINE L1 5369 5583 -717 399 41 0 0 chr21 11540206 11540255 -33367315 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2052 134 0 0 chr21 11540257 11540540 -33367030 + AluSx SINE Alu 21 303 -9 2229 145 36 3 chr21 11540540 11540705 -33366865 + L1M1 LINE L1 5583 5773 -527 10435 214 33 51 chr21 11540774 11541062 -33366508 - L1MC3 LINE L1 -26 7969 7677 329 50 0 0 chr21 11541062 11541102 -33366468 + THE1A LTR MaLR 1 40 -315 10636 94 9 55 chr21 11541102 11542754 -33364816 + THE1A-int LTR MaLR 4 1580 0 2368 103 20 8 chr21 11542754 11543105 -33364465 + THE1A LTR MaLR 1 355 0 10435 214 33 51 chr21 11543105 11547054 -33360516 - L1MC3 LINE L1 -315 7680 2405 1335 77 0 0 chr21 11547054 11547224 -33360346 - AluY SINE Alu -6 305 136 648 115 19 19 chr21 11547224 11547328 -33360242 + LTR1B LTR ERV1 723 826 0 474 190 111 0 chr21 11547328 11547451 -33360119 + MER67B LTR ERV1 60 156 -358 3854 154 82 11 chr21 11547450 11548144 -33359426 - LTR1B LTR ERV1 -83 743 1 306 263 110 25 chr21 11548144 11548262 -33359308 - MER67B LTR ERV1 -502 159 32 1957 129 16 19 chr21 11548670 11548981 -33358589 - AluY SINE Alu -1 310 1 1920 161 0 0 chr21 11549336 11549635 -33357935 + AluSx SINE Alu 1 299 -13 554 331 60 40 chr21 11551714 11552113 -33355457 - LTR33 LTR ERVL -114 407 1 2052 176 36 28 chr21 11552333 11552878 -33354692 + MLT2A2 LTR ERVL 1 551 -3 914 274 164 34 chr21 11552881 11553798 -33353772 - HAL1b LINE L1 -105 1243 208 2320 38 0 0 chr21 11553931 11554194 -33353376 + AluY SINE Alu 1 263 -48 230 0 33 0 chr21 11554208 11554238 -33353332 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 231 337 127 17 chr21 11554431 11554612 -33352958 + L3 LINE CR1 327 527 -1050 30 0 0 0 chr21 11554619 11554649 -33352921 + AT_rich Low_complexity Low_complexity 1 30 0 591 367 129 23 chr21 11554857 11555629 -33351941 + L3 LINE CR1 623 1476 -101 407 319 145 0 chr21 11555768 11555934 -33351636 + MIR SINE MIR 39 228 -34 319 146 0 36 chr21 11556388 11556443 -33351127 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr21 11556624 11556683 -33350887 + CT-rich Low_complexity Low_complexity 1 54 0 317 307 144 23 chr21 11556736 11556951 -33350619 - HAL1 LINE L1 0 2507 2267 227 312 8 56 chr21 11556999 11557124 -33350446 + L2 LINE L2 3195 3313 0 755 230 8 60 chr21 11557176 11557411 -33350159 - HAL1 LINE L1 -754 1753 1531 812 305 79 16 chr21 11557412 11557980 -33349590 - HAL1 LINE L1 -868 1639 1036 378 269 123 15 chr21 11557970 11558238 -33349332 - HAL1 LINE L1 -1240 1267 971 * 2091 103 0 7 chr21 11559241 11559543 -33348027 + AluY SINE Alu 1 300 0 1136 258 31 123 chr21 11559591 11560145 -33347425 + MLT1E2 LTR MaLR 1 503 -2 2036 128 0 0 chr21 11560151 11560572 -33346998 + AluSq SINE Alu 3 423 0 321 26 0 0 chr21 11562069 11562107 -33345463 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr21 11563555 11563630 -33343940 + AT_rich Low_complexity Low_complexity 1 75 0 1925 121 7 11 chr21 11564719 11565000 -33342570 - AluSx SINE Alu -32 280 1 863 125 0 0 chr21 11565025 11565153 -33342417 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr21 11565587 11565610 -33341960 + AT_rich Low_complexity Low_complexity 1 23 0 2207 108 15 6 chr21 11565610 11565952 -33341618 - L1PB1 LINE L1 -3 6148 5804 2451 219 48 76 chr21 11566014 11566804 -33340766 - L1MB1 LINE L1 0 6168 5401 1721 232 37 34 chr21 11566806 11567155 -33340415 + L1M4 LINE L1 4803 5149 -997 1844 118 17 37 chr21 11567155 11567451 -33340119 - AluSc SINE Alu -14 295 6 2195 128 0 10 chr21 11567456 11567769 -33339801 - AluSx SINE Alu -2 310 1 1721 232 37 34 chr21 11567769 11567981 -33339589 + L1M4 LINE L1 5152 5372 -774 825 248 30 52 chr21 11567982 11568298 -33339272 - L1MEc LINE L1 -3649 3292 3028 2557 52 0 0 chr21 11568298 11568604 -33338966 - AluY SINE Alu -5 306 1 825 248 30 52 chr21 11568604 11568769 -33338801 - L1MEc LINE L1 -3913 3028 2861 1874 285 92 69 chr21 11568770 11569918 -33337652 - L1MEc LINE L1 -5231 1192 19 2441 60 0 3 chr21 11570316 11570616 -33336954 + AluY SINE Alu 2 300 -11 2288 195 45 10 chr21 11570688 11571180 -33336390 - LTR22 LTR ERVK 0 509 1 219 209 136 64 chr21 11571639 11571749 -33335821 - MIR SINE MIR -56 206 89 210 286 181 8 chr21 11572675 11572808 -33334762 + MIR SINE MIR 51 206 -56 2426 75 0 0 chr21 11573002 11573296 -33334274 - AluY SINE Alu -17 294 1 187 280 65 108 chr21 11573391 11573484 -33334086 - L3 LINE CR1 -50 1527 1439 3450 72 13 4 chr21 11573936 11574409 -33333161 + MER11A LTR ERVK 790 1266 0 7082 191 6 39 chr21 11574411 11575035 -33332535 - L1P LINE L1 -1226 4920 4277 1711 191 3 0 chr21 11575035 11575328 -33332242 - AluJb SINE Alu -18 294 1 7082 191 6 39 chr21 11575328 11575811 -33331759 - L1P LINE L1 -1869 4277 3876 2074 130 3 3 chr21 11575811 11576118 -33331452 - AluSc SINE Alu -2 307 1 7082 191 6 39 chr21 11576118 11576572 -33330998 - L1P LINE L1 -2270 3876 3409 514 301 57 66 chr21 11576594 11576929 -33330641 - MLT1H1 LTR MaLR -204 351 20 2450 74 0 0 chr21 11576930 11577226 -33330344 - AluY SINE Alu -15 296 1 285 215 115 20 chr21 11577233 11577411 -33330159 + L1ME LINE L1 5677 5866 -312 4148 184 11 25 chr21 11577442 11578254 -33329316 - L1MA8 LINE L1 -172 6119 5322 1958 149 10 0 chr21 11578254 11578550 -33329020 - AluSq SINE Alu -14 299 1 4148 184 11 25 chr21 11578550 11578757 -33328813 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr21 11579300 11579356 -33328214 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr21 11579838 11579880 -33327690 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr21 11580476 11580512 -33327058 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1835 196 52 28 chr21 11580633 11581020 -33326550 - MSTD LTR MaLR 0 396 1 328 258 0 86 chr21 11581137 11581265 -33326305 + MER5B DNA MER1_type 19 135 -43 280 325 94 49 chr21 11581530 11581733 -33325837 - MIR SINE MIR -3 259 48 2386 57 0 0 chr21 11582850 11583178 -33324392 + AluY SINE Alu 1 328 0 240 35 0 0 chr21 11583988 11584017 -33323553 + (CA)n Simple_repeat Simple_repeat 2 30 0 1749 106 4 0 chr21 11584561 11584797 -33322773 - AluSx SINE Alu -16 296 60 3202 69 7 0 chr21 11584797 11585231 -33322339 - L1PA8 LINE L1 -2 6170 5734 1757 129 7 41 chr21 11585619 11585913 -33321657 - AluSx SINE Alu -18 294 11 26 30 0 0 chr21 11586114 11586147 -33321423 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr21 11587134 11587175 -33320395 + AT_rich Low_complexity Low_complexity 1 41 0 2206 114 3 0 chr21 11587297 11587594 -33319976 + AluSq SINE Alu 1 298 -15 612 316 43 8 chr21 11587807 11588063 -33319507 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr21 11588813 11588834 -33318736 + AT_rich Low_complexity Low_complexity 1 21 0 267 242 0 0 chr21 11588852 11588914 -33318656 - MIR SINE MIR -14 248 187 2154 130 0 0 chr21 11589866 11590159 -33317411 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 11590164 11590186 -33317384 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 11590221 11590254 -33317316 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr21 11591269 11591299 -33316271 + (CA)n Simple_repeat Simple_repeat 1 30 0 597 294 43 7 chr21 11592130 11592406 -33315164 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr21 11592608 11592649 -33314921 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr21 11593140 11593236 -33314334 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr21 11593354 11593389 -33314181 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr21 11593841 11593864 -33313706 + AT_rich Low_complexity Low_complexity 1 23 0 209 319 14 0 chr21 11594051 11594123 -33313447 + (TA)n Simple_repeat Simple_repeat 1 73 0 1197 85 0 0 chr21 11594234 11594387 -33313183 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr21 11594394 11594414 -33313156 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2126 98 35 0 chr21 11594425 11594711 -33312859 - AluSp SINE Alu -17 296 1 839 255 90 17 chr21 11594723 11595080 -33312490 + Charlie2 DNA MER1_type 2439 2821 -41 449 335 79 32 chr21 11595548 11595990 -33311580 - L2 LINE L2 -624 2690 2228 5079 159 42 29 chr21 11597375 11599070 -33308500 + L1MA5 LINE L1 4553 6271 -29 9067 117 5 1 chr21 11599070 11600352 -33307218 - HSMAR1 DNA Mariner 0 1287 1 5079 159 42 29 chr21 11600352 11600381 -33307189 + L1MA5 LINE L1 6271 6298 -2 1033 201 34 8 chr21 11600871 11601110 -33306460 - Zaphod DNA AcHobo -8 4023 3779 219 276 102 31 chr21 11602479 11602606 -33304964 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr21 11602840 11602876 -33304694 + AT_rich Low_complexity Low_complexity 1 36 0 699 266 6 0 chr21 11604640 11604813 -33302757 - FRAM SINE Alu -5 171 1 975 249 119 103 chr21 11605046 11605543 -33302027 + MLT1H1 LTR MaLR 1 549 0 186 43 0 0 chr21 11605697 11605720 -33301850 + (TC)n Simple_repeat Simple_repeat 2 24 0 189 171 0 0 chr21 11605721 11605756 -33301814 + (TA)n Simple_repeat Simple_repeat 1 35 0 219 139 0 0 chr21 11606179 11606215 -33301355 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr21 11606781 11606826 -33300744 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr21 11607365 11607433 -33300137 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr21 11608028 11608045 -33299525 + AT_rich Low_complexity Low_complexity 1 17 -19 2031 124 3 20 chr21 11608045 11608351 -33299219 - AluSq SINE Alu -12 301 1 23 0 0 53 chr21 11608351 11608371 -33299199 + AT_rich Low_complexity Low_complexity 17 36 0 280 341 11 0 chr21 11608909 11608997 -33298573 + L2 LINE L2 3223 3311 -2 715 244 311 28 chr21 11609082 11609471 -33298099 + L2 LINE L2 2321 2819 -495 1214 314 58 24 chr21 11609626 11610088 -33297482 + L2 LINE L2 2815 3292 -21 2220 104 3 0 chr21 11610092 11610380 -33297190 + AluSc SINE Alu 5 293 -16 2256 132 5 27 chr21 11611475 11611847 -33295723 - THE1B LTR MaLR 0 364 1 205 257 86 0 chr21 11611907 11611977 -33295593 - MIR SINE MIR 0 262 187 413 297 95 0 chr21 11612269 11612417 -33295153 - MIR SINE MIR -17 245 84 26 0 0 0 chr21 11612537 11612563 -33295007 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr21 11614982 11615016 -33292554 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr21 11615101 11615148 -33292422 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr21 11615361 11615396 -33292174 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr21 11616939 11617003 -33290567 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr21 11617062 11617103 -33290467 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr21 11617891 11617925 -33289645 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2396 142 37 40 chr21 11617969 11618398 -33289172 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr21 11619403 11619460 -33288110 + T-rich Low_complexity Low_complexity 2 59 0 196 325 88 6 chr21 11619528 11619661 -33287909 + MIR SINE MIR 8 145 -63 1488 208 0 0 chr21 11621877 11622151 -33285419 + AluJo SINE Alu 30 303 -9 571 99 0 0 chr21 11622154 11622235 -33285335 + MER72 LTR ERV1 642 722 0 180 352 32 48 chr21 11622645 11622770 -33284800 + MER5A DNA MER1_type 30 152 -37 257 235 47 0 chr21 11623580 11623665 -33283905 + L1MC4 LINE L1 6614 6702 -1340 1473 173 123 62 chr21 11623691 11624032 -33283538 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr21 11624581 11624609 -33282961 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 187 73 55 chr21 11625189 11626700 -33280870 - MER52A LTR ERV1 0 1755 1 2399 66 0 10 chr21 11627352 11627654 -33279916 - AluY SINE Alu -12 299 1 402 101 0 0 chr21 11627670 11627739 -33279831 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr21 11627739 11627783 -33279787 - FAM SINE Alu -69 106 63 2039 116 0 3 chr21 11627909 11628193 -33279377 + AluSq SINE Alu 1 283 -30 2469 188 112 65 chr21 11628654 11628746 -33278824 + L1MA9 LINE L1 5519 5605 -707 1867 158 7 0 chr21 11628746 11629037 -33278533 + AluSx SINE Alu 1 293 -19 2469 188 112 65 chr21 11629037 11629668 -33277902 + L1MA9 LINE L1 5605 6276 -36 733 191 0 22 chr21 11630023 11630159 -33277411 + AluJo/FLAM SINE Alu 1 133 -179 383 179 0 0 chr21 11630160 11630227 -33277343 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr21 11631002 11631039 -33276531 + 5S rRNA rRNA 2 38 -83 709 259 121 17 chr21 11631044 11631482 -33276088 + L2 LINE L2 2413 2957 -357 347 327 23 22 chr21 11631503 11631786 -33275784 - MLT1J2 LTR MaLR -14 436 84 2131 109 7 0 chr21 11631974 11632257 -33275313 - AluSx SINE Alu -27 285 1 405 316 108 58 chr21 11632261 11632641 -33274929 + MLT1J2 LTR MaLR 33 431 -19 197 290 9 37 chr21 11632651 11632758 -33274812 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr21 11632768 11632987 -33274583 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr21 11632994 11633117 -33274453 + L2 LINE L2 3190 3313 0 941 235 118 76 chr21 11633134 11633619 -33273951 + MLT1D LTR MaLR 1 505 0 418 287 115 6 chr21 11634205 11634379 -33273191 + MLT1L LTR MaLR 412 604 -11 24 32 0 0 chr21 11634844 11634875 -33272695 + AT_rich Low_complexity Low_complexity 1 31 0 305 216 108 29 chr21 11635664 11635766 -33271804 + MLT1A1 LTR MaLR 20 129 -236 1188 274 62 32 chr21 11635896 11636480 -33271090 - HAL1b LINE L1 -736 612 12 447 277 19 19 chr21 11636763 11636976 -33270594 + L1MC3 LINE L1 3275 3487 -2659 1547 173 74 28 chr21 11637051 11637403 -33270167 + THE1C LTR MaLR 5 372 -3 6955 127 40 52 chr21 11637406 11638744 -33268826 + THE1C-int LTR MaLR 1 1314 -266 324 49 0 0 chr21 11638744 11638785 -33268785 - MLT2A2 LTR ERVL 0 453 413 216 0 0 0 chr21 11638786 11638810 -33268760 + (TA)n Simple_repeat Simple_repeat 2 25 0 2297 89 3 0 chr21 11638814 11639127 -33268443 - MLT2A2 LTR ERVL -139 314 1 39181 95 11 8 chr21 11639127 11644760 -33262810 - HERVL-A2-A2 LTR ERVL 0 5654 1 3167 107 16 7 chr21 11644760 11645209 -33262361 - MLT2A2 LTR ERVL 0 453 1 1609 119 15 4 chr21 11645209 11645477 -33262093 + THE1C-int LTR MaLR 1310 1580 0 1579 161 79 37 chr21 11645479 11645834 -33261736 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr21 11645834 11645873 -33261697 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr21 11645887 11646034 -33261536 + (TA)n Simple_repeat Simple_repeat 1 159 0 1675 229 76 19 chr21 11646034 11646466 -33261104 - MLT2B1 LTR ERVL -63 457 1 4136 186 21 10 chr21 11646508 11647334 -33260236 - ERVL-B1 LTR ERVL -235 5529 4695 1301 291 67 4 chr21 11647330 11647869 -33259701 - ERVL-B1 LTR ERVL -5084 591 5 * 959 246 100 27 chr21 11647873 11648286 -33259284 - MLT2B1 LTR ERVL 0 464 1 4029 213 74 75 chr21 11648330 11650334 -33257236 + L1MC3 LINE L1 3530 4671 -1475 806 118 0 0 chr21 11650334 11650473 -33257097 - AluY SINE Alu 0 310 172 4029 213 74 75 chr21 11650473 11651206 -33256364 + L1MC3 LINE L1 4671 5403 -743 1255 219 19 41 chr21 11651210 11651529 -33256041 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr21 11651530 11651612 -33255958 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2229 140 5 27 chr21 11652658 11653030 -33254540 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr21 11654296 11654367 -33253203 + AT_rich Low_complexity Low_complexity 1 71 0 1303 78 0 31 chr21 11654458 11654649 -33252921 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr21 11654946 11654985 -33252585 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr21 11655601 11655644 -33251926 + (TA)n Simple_repeat Simple_repeat 1 45 0 275 322 30 10 chr21 11655685 11655795 -33251775 - MIR SINE MIR -63 145 38 21 0 0 0 chr21 11655908 11655929 -33251641 + AT_rich Low_complexity Low_complexity 1 21 0 200 359 142 0 chr21 11656991 11657097 -33250473 + MIR SINE MIR 17 137 -125 25 0 0 0 chr21 11657183 11657208 -33250362 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr21 11657267 11657296 -33250274 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr21 11657320 11657349 -33250221 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr21 11657674 11657702 -33249868 + (T)n Simple_repeat Simple_repeat 1 28 0 4129 189 42 9 chr21 11658170 11658232 -33249338 - L1MC2 LINE L1 -6 6338 6280 2343 87 7 0 chr21 11658232 11658531 -33249039 + AluY SINE Alu 1 301 -10 4129 189 42 9 chr21 11658531 11659364 -33248206 - L1MC2 LINE L1 -64 6280 5413 2010 105 36 0 chr21 11659373 11659678 -33247892 - L1PA16 LINE L1 -9 6157 5842 673 137 86 0 chr21 11659678 11659853 -33247717 - L1MC2 LINE L1 -743 5403 5224 2366 103 0 0 chr21 11661039 11661340 -33246230 - AluSq SINE Alu -12 301 1 964 203 17 0 chr21 11661725 11661902 -33245668 - AluSg/x SINE Alu -1 309 130 2166 133 0 9 chr21 11661902 11662217 -33245353 - AluSx SINE Alu 0 312 1 553 89 13 0 chr21 11662627 11662706 -33244864 - MADE1 DNA Mariner 0 80 1 910 266 22 0 chr21 11664052 11664274 -33243296 + MIR SINE MIR 36 262 0 526 220 55 0 chr21 11664839 11664948 -33242622 + MIR3 SINE MIR 82 196 -12 205 200 62 113 chr21 11665198 11665278 -33242292 + L2 LINE L2 3197 3272 0 225 0 0 0 chr21 11665736 11665761 -33241809 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 11666235 11666256 -33241314 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 11666892 11666936 -33240634 + AT_rich Low_complexity Low_complexity 1 44 0 190 299 75 47 chr21 11667864 11667971 -33239599 + L2 LINE L2 3197 3306 -7 234 338 203 23 chr21 11668304 11668437 -33239133 - MIR3 SINE MIR -6 202 46 32 0 0 0 chr21 11668856 11668888 -33238682 + AT_rich Low_complexity Low_complexity 1 32 0 1025 244 168 66 chr21 11670167 11670654 -33236916 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr21 11671231 11671262 -33236308 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 531 31 0 0 chr21 11671261 11671326 -33236244 + (GA)n Simple_repeat Simple_repeat 2 66 0 429 261 27 9 chr21 11671328 11671439 -33236131 + MER5B DNA MER1_type 63 175 -3 10324 198 10 79 chr21 11671678 11673915 -33233655 + L1 LINE L1 2286 4435 -1711 1150 157 0 0 chr21 11673915 11674093 -33233477 + AluSp SINE Alu 136 313 0 10324 198 10 79 chr21 11674093 11674828 -33232742 + L1 LINE L1 4435 5219 -927 470 127 7 72 chr21 11674829 11675125 -33232445 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2688 155 2 14 chr21 11675269 11675786 -33231784 - TAR1 Satellite telomeric -43 2068 1558 385 275 33 0 chr21 11677049 11677169 -33230401 + MIR SINE MIR 84 207 -55 693 270 0 27 chr21 11677177 11677362 -33230208 - MIR SINE MIR -6 256 77 236 30 30 0 chr21 11677378 11677411 -33230159 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 223 226 19 0 chr21 11678084 11678137 -33229433 - L3b LINE CR1 -195 1388 1335 519 285 40 7 chr21 11678388 11678539 -33229031 - MIR3 SINE MIR -34 174 19 352 286 29 21 chr21 11678796 11678936 -33228634 - MIR SINE MIR -87 175 35 215 208 0 21 chr21 11679193 11679241 -33228329 + MIR SINE MIR 206 252 -10 272 284 51 60 chr21 11679891 11679991 -33227579 + MIR3 SINE MIR 79 178 -30 567 251 221 5 chr21 11680531 11680730 -33226840 - MIR SINE MIR -7 255 14 388 292 30 46 chr21 11681016 11681156 -33226414 - MIR SINE MIR -48 160 28 2327 92 0 3 chr21 11681159 11681462 -33226108 - AluSg SINE Alu -8 302 1 232 274 113 28 chr21 11682139 11682245 -33225325 + L2 LINE L2 3158 3272 0 556 314 41 18 chr21 11682547 11682767 -33224803 + MIR SINE MIR 2 226 -36 1201 144 33 37 chr21 11682889 11683104 -33224466 - AluJo SINE Alu -98 214 1 330 301 137 77 chr21 11683494 11684261 -33223309 - L1M2 LINE L1 -5599 1250 438 589 241 99 0 chr21 11684526 11684667 -33222903 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr21 11684669 11684963 -33222607 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 11685239 11685261 -33222309 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 11685336 11685360 -33222210 + AT_rich Low_complexity Low_complexity 1 24 0 615 324 109 30 chr21 11685487 11685962 -33221608 + L1MDb LINE L1 104 616 -5793 424 293 79 68 chr21 11685969 11686378 -33221192 + L1MDb LINE L1 363 740 -5669 300 290 202 73 chr21 11686513 11687181 -33220389 + L1M2 LINE L1 653 1406 -5443 473 271 60 57 chr21 11687797 11688180 -33219390 - HSREP522 Satellite telomeric 0 504 121 229 310 17 35 chr21 11689415 11689589 -33217981 + GA-rich Low_complexity Low_complexity 5 175 0 318 183 0 14 chr21 11690362 11690433 -33217137 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr21 11690440 11690468 -33217102 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1724 142 32 4 chr21 11690468 11690744 -33216826 - AluSx SINE Alu -27 285 2 2188 218 14 10 chr21 11690744 11691239 -33216331 - L1 LINE L1 -2203 3943 3447 1668 243 16 0 chr21 11691241 11691612 -33215958 - MSTB LTR MaLR -49 377 1 3193 201 21 3 chr21 11691617 11692233 -33215337 - MSTB-int LTR MaLR -5 1646 1020 4369 273 37 26 chr21 11692235 11693804 -33213766 - L1P LINE L1 -2696 3450 1860 2029 142 0 0 chr21 11693804 11694099 -33213471 + AluSx SINE Alu 1 295 -17 4369 273 37 26 chr21 11694099 11694224 -33213346 - L1P LINE L1 -4286 1860 1738 1652 176 67 34 chr21 11694237 11696000 -33211570 + SVA Other Other 432 868 -518 5545 122 45 47 chr21 11696013 11697009 -33210561 + SVA Other Other 391 1384 -2 351 0 0 0 chr21 11697038 11697077 -33210493 + (TG)n Simple_repeat Simple_repeat 2 40 0 331 310 63 7 chr21 11698464 11698606 -33208964 + L2 LINE L2 2722 2871 -443 273 273 0 0 chr21 11699412 11699500 -33208070 - L1MC4 LINE L1 -1339 6703 6616 22 56 0 0 chr21 11702390 11702426 -33205144 + AT_rich Low_complexity Low_complexity 1 36 0 339 305 91 13 chr21 11702572 11702870 -33204700 + L1ME4a LINE L1 5518 5838 -283 366 399 81 19 chr21 11703347 11703670 -33203900 - L2 LINE L2 0 3272 2930 938 337 87 33 chr21 11703678 11704348 -33203222 + L1MEc LINE L1 40 745 -5651 339 239 36 72 chr21 11704352 11704490 -33203080 + L1MEc LINE L1 994 1126 -5270 1222 226 40 99 chr21 11704643 11704884 -33202686 + L1MEc LINE L1 1944 2198 -4017 303 28 0 0 chr21 11704884 11704920 -33202650 + (TA)n Simple_repeat Simple_repeat 1 36 0 1222 226 40 99 chr21 11704920 11705518 -33202052 + L1MEc LINE L1 2198 2691 -3524 748 293 45 35 chr21 11705535 11705935 -33201635 + L1MEc LINE L1 2791 3194 -3021 1391 249 19 5 chr21 11705948 11706305 -33201265 + MLT1A1 LTR MaLR 6 396 0 297 302 68 16 chr21 11706322 11706574 -33200996 + L1MEc LINE L1 3230 3494 -2721 4100 82 6 10 chr21 11706575 11707547 -33200023 + L1P2 LINE L1 4851 5816 -338 261 306 25 19 chr21 11707782 11707939 -33199631 + L1ME3A LINE L1 5770 5927 -243 180 0 0 0 chr21 11708137 11708157 -33199413 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1038 41 0 0 chr21 11708159 11708303 -33199267 - AluY SINE Alu 0 304 161 449 154 11 0 chr21 11708335 11708426 -33199144 + (CA)n Simple_repeat Simple_repeat 1 92 0 24 85 0 0 chr21 11709832 11709891 -33197679 + AT_rich Low_complexity Low_complexity 1 59 0 358 221 307 21 chr21 11710583 11710723 -33196847 + MER5A DNA MER1_type 9 188 -1 1679 164 43 16 chr21 11711417 11711721 -33195849 - AluSx SINE Alu 0 312 1 23 33 0 0 chr21 11711723 11711753 -33195817 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr21 11712278 11712306 -33195264 + AT_rich Low_complexity Low_complexity 1 28 0 186 300 114 29 chr21 11712500 11712570 -33195000 - L2 LINE L2 -29 3243 3168 * 205 339 110 8 chr21 11712562 11712689 -33194881 + L2 LINE L2 2946 3085 -228 287 305 81 46 chr21 11713115 11713312 -33194258 - MIR SINE MIR -50 212 9 1920 101 0 4 chr21 11713939 11714197 -33193373 - AluY SINE Alu -5 306 50 231 368 90 38 chr21 11715119 11715486 -33192084 - L2 LINE L2 -339 2975 2590 21 57 0 0 chr21 11715985 11716020 -33191550 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr21 11716855 11716900 -33190670 + AT_rich Low_complexity Low_complexity 1 45 0 685 249 61 0 chr21 11717167 11717364 -33190206 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr21 11717450 11717474 -33190096 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr21 11717722 11717745 -33189825 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 11718312 11718346 -33189224 + AT_rich Low_complexity Low_complexity 1 34 0 1723 68 0 5 chr21 11718516 11718735 -33188835 + AluY SINE Alu 84 301 -10 1822 148 34 3 chr21 11718745 11719043 -33188527 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr21 11719056 11719081 -33188489 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr21 11719211 11719239 -33188331 + AT_rich Low_complexity Low_complexity 1 28 0 644 202 9 0 chr21 11719773 11719887 -33187683 - FLAM_A SINE Alu -15 118 4 2355 60 10 3 chr21 11720764 11721063 -33186507 - AluY SINE Alu -10 301 1 219 198 8 83 chr21 11722818 11722939 -33184631 + A-rich Low_complexity Low_complexity 5 116 0 398 378 5 15 chr21 11723403 11723599 -33183971 + MIR SINE MIR 63 256 -6 555 209 0 27 chr21 11723762 11723872 -33183698 + FLAM_A SINE Alu 4 110 -32 1032 189 53 66 chr21 11724335 11724579 -33182991 - MER21A LTR ERV1 -24 907 667 * 3149 194 49 23 chr21 11724573 11725232 -33182338 + MER44D DNA MER2_type 30 705 0 324 0 0 0 chr21 11725238 11725274 -33182296 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 477 50 0 0 chr21 11725273 11725333 -33182237 + (GA)n Simple_repeat Simple_repeat 1 60 0 405 350 93 19 chr21 11725686 11726009 -33181561 + L2 LINE L2 2026 2372 -942 23 0 0 0 chr21 11726205 11726228 -33181342 + AT_rich Low_complexity Low_complexity 1 23 0 1814 212 55 23 chr21 11726285 11726757 -33180813 + LTR22B LTR ERVK 1 487 -5 1800 122 25 7 chr21 11726765 11727044 -33180526 + HERVK22 LTR ERVK 12 295 -6542 817 247 54 0 chr21 11727052 11727238 -33180332 + MER58A DNA MER1_type 29 224 0 257 284 0 0 chr21 11727440 11727507 -33180063 + MLT1L LTR MaLR 144 210 -405 600 188 17 0 chr21 11727507 11727624 -33179946 + AluSp/q SINE Alu 171 289 -24 1739 160 21 4 chr21 11727993 11728297 -33179273 - AluSq SINE Alu 0 309 1 22 35 0 0 chr21 11729719 11729748 -33177822 + AT_rich Low_complexity Low_complexity 1 29 0 1602 195 7 0 chr21 11729869 11730161 -33177409 + AluSx SINE Alu 3 296 -16 19252 33 0 0 chr21 11730161 11733262 -33174308 + L1PA2 LINE L1 3054 6155 0 248 253 118 109 chr21 11734160 11734381 -33173189 + Charlie1 DNA MER1_type 5 227 -2534 3499 57 15 4 chr21 11734550 11735005 -33172565 - L1PA4 LINE L1 0 6155 5696 1899 130 14 3 chr21 11735007 11735300 -33172270 - AluY SINE Alu -15 296 1 361 205 331 0 chr21 11736206 11736333 -33171237 + MER5A DNA MER1_type 16 184 -5 1991 110 0 0 chr21 11740142 11740415 -33167155 + AluY SINE Alu 1 273 -38 1639 188 17 3 chr21 11740529 11740821 -33166749 - AluSx SINE Alu -16 296 1 369 0 0 0 chr21 11741006 11741047 -33166523 + (CA)n Simple_repeat Simple_repeat 1 41 0 6598 74 31 3 chr21 11741857 11742727 -33164843 + MER11D LTR ERVK 1 894 -3 1634 187 0 7 chr21 11743851 11744145 -33163425 + AluSg SINE Alu 3 294 -16 289 354 127 25 chr21 11744773 11744931 -33162639 - L2 LINE L2 -2917 397 224 703 250 0 0 chr21 11745694 11745850 -33161720 - MER6B DNA MER2_type -54 156 1 1635 95 110 26 chr21 11746247 11746520 -33161050 + L1PA13 LINE L1 5861 6156 -7 1484 164 3 85 chr21 11746535 11746864 -33160706 + AluJb SINE Alu 1 302 -10 370 140 29 89 chr21 11747072 11747201 -33160369 + MLT1D LTR MaLR 89 208 -297 1286 242 21 3 chr21 11747207 11747496 -33160074 + AluJo SINE Alu 5 298 -14 1148 192 131 27 chr21 11747746 11748006 -33159564 + AluJo SINE Alu 1 287 -15 243 0 0 0 chr21 11748009 11748036 -33159534 + (GA)n Simple_repeat Simple_repeat 2 28 0 690 229 7 0 chr21 11748037 11748177 -33159393 - AluJo SINE Alu -148 164 24 295 223 9 125 chr21 11748239 11748270 -33159300 + L1MB8 LINE L1 5476 5509 -653 1504 194 7 14 chr21 11748270 11748564 -33159006 + AluJb SINE Alu 1 292 -20 295 223 9 125 chr21 11748564 11748644 -33158926 + L1MB8 LINE L1 5509 5574 -588 687 202 0 31 chr21 11748670 11748799 -33158771 - FLAM_A SINE Alu -8 125 1 2490 214 22 26 chr21 11748799 11749420 -33158150 + L1MB8 LINE L1 5555 6173 -5 1586 172 3 35 chr21 11749441 11749731 -33157839 + AluJo SINE Alu 1 281 -31 1207 122 0 6 chr21 11749749 11749913 -33157657 + AluSq SINE Alu 1 163 -150 1498 133 0 5 chr21 11749926 11750144 -33157426 + AluSg/x SINE Alu 79 295 -17 253 255 11 11 chr21 11750167 11750261 -33157309 - LTR37A LTR ERV1 -93 333 240 1367 210 3 21 chr21 11750426 11750717 -33156853 - AluJo SINE Alu -26 286 1 652 210 0 8 chr21 11750748 11750872 -33156698 - FLAM_C SINE Alu -20 123 1 1380 257 82 18 chr21 11750972 11751578 -33155992 + L2 LINE L2 2458 3097 -216 1748 186 44 0 chr21 11751582 11751878 -33155692 - AluJo SINE Alu -3 309 1 1398 184 19 61 chr21 11751879 11752238 -33155332 - MLT1D LTR MaLR 0 505 162 700 193 0 0 chr21 11752238 11752357 -33155213 + AluJo SINE Alu 2 120 -192 1581 212 10 7 chr21 11752381 11752688 -33154882 + AluJo SINE Alu 1 308 -4 299 246 14 0 chr21 11752693 11752762 -33154808 + MER21B LTR ERV1 21 90 -773 663 160 53 124 chr21 11752856 11753081 -33154489 + MER58 DNA MER1_type 2189 2397 -23 240 260 117 26 chr21 11753096 11753173 -33154397 + L3 LINE CR1 1186 1269 -308 872 230 0 31 chr21 11753250 11753446 -33154124 + AluJo SINE Alu 108 297 -15 227 288 0 0 chr21 11753447 11753513 -33154057 + L1MB4 LINE L1 5200 5265 -881 2177 105 7 0 chr21 11753543 11753837 -33153733 + AluSc SINE Alu 1 296 -13 1906 193 23 48 chr21 11753837 11754685 -33152885 + L1MB4 LINE L1 5332 6123 -57 199 227 0 0 chr21 11754811 11754855 -33152715 - MIR SINE MIR -152 110 67 250 204 0 0 chr21 11755553 11755602 -33151968 - MIR SINE MIR -56 206 158 2590 52 26 0 chr21 11755618 11755963 -33151607 - L1PA7 LINE L1 -30 6124 5771 1373 183 183 3 chr21 11756156 11756505 -33151065 - LOR1b LTR ERV1 0 461 50 1657 116 46 0 chr21 11756966 11757116 -33150454 - AluSq SINE Alu -23 290 123 250 24 71 0 chr21 11757116 11757158 -33150412 + T-rich Low_complexity Low_complexity 2 46 0 1657 116 46 0 chr21 11757158 11757248 -33150322 - AluSq SINE Alu -190 123 39 554 200 0 0 chr21 11757248 11757343 -33150227 - FLAM_A SINE Alu -27 115 21 239 261 0 15 chr21 11757381 11757446 -33150124 + L1ME1 LINE L1 3492 3555 -2591 1806 229 77 57 chr21 11757651 11758394 -33149176 + L1ME1 LINE L1 5408 6165 -1 22 0 0 0 chr21 11758671 11758693 -33148877 + AT_rich Low_complexity Low_complexity 1 22 0 1918 134 7 7 chr21 11759400 11759710 -33147860 + AluSx SINE Alu 1 312 0 805 167 108 25 chr21 11759740 11759944 -33147626 + L1MA4A LINE L1 6059 6279 -24 1615 143 53 0 chr21 11760821 11761066 -33146504 + AluSx SINE Alu 41 298 -14 279 104 0 0 chr21 11761493 11761541 -33146029 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 445 273 16 0 chr21 11761655 11761783 -33145787 + L1MC4 LINE L1 7770 7899 -143 282 343 30 6 chr21 11762047 11762216 -33145354 - L1MC/D LINE L1 -2186 5622 5450 594 231 8 0 chr21 11762322 11762439 -33145131 - FLAM_C SINE Alu -25 118 1 1652 211 3 0 chr21 11763079 11763373 -33144197 - AluJo SINE Alu -17 295 1 447 221 0 0 chr21 11763640 11763717 -33143853 + AluJ/FLAM SINE Alu 3 79 -233 1429 254 47 4 chr21 11763718 11764203 -33143367 + L1M4 LINE L1 4855 5360 -786 1645 199 55 128 chr21 11764213 11764274 -33143296 + L1MB7 LINE L1 5045 5109 -1075 2211 117 7 0 chr21 11764274 11764574 -33142996 + AluY SINE Alu 1 302 -9 1645 199 55 128 chr21 11764574 11764944 -33142626 + L1MB7 LINE L1 5109 5505 -679 1628 164 3 50 chr21 11764944 11765242 -33142328 + AluJb SINE Alu 22 305 -7 1645 199 55 128 chr21 11765242 11765767 -33141803 + L1MB7 LINE L1 5505 5926 -258 412 207 27 120 chr21 11765784 11765934 -33141636 + L1MB7 LINE L1 6040 6175 -9 1515 211 24 14 chr21 11767795 11768084 -33139486 + AluJo SINE Alu 1 292 -20 844 205 141 25 chr21 11768204 11768487 -33139083 + MER33 DNA MER1_type 8 323 -1 468 214 54 9 chr21 11769152 11769264 -33138306 - Tigger1 DNA MER2_type 0 2418 2302 * 10611 147 27 24 chr21 11769262 11769561 -33138009 - Tigger1 DNA MER2_type -374 2044 1748 2226 110 13 0 chr21 11769561 11769860 -33137710 - AluSp SINE Alu -10 303 1 10611 147 27 24 chr21 11769860 11770139 -33137431 - Tigger1 DNA MER2_type -670 1748 1471 2164 123 0 0 chr21 11770139 11770432 -33137138 - AluSc SINE Alu -16 293 1 10611 147 27 24 chr21 11770432 11770466 -33137104 - Tigger1 DNA MER2_type -947 1471 1439 1281 207 24 30 chr21 11770466 11770761 -33136809 + AluJb SINE Alu 1 293 -19 10611 147 27 24 chr21 11770761 11772158 -33135412 - Tigger1 DNA MER2_type -979 1439 26 1921 155 3 17 chr21 11772738 11773034 -33134536 + AluSx SINE Alu 1 292 -20 1833 131 13 34 chr21 11773378 11773504 -33134066 + AluSg SINE Alu 3 130 -180 264 59 0 0 chr21 11773504 11773538 -33134032 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1833 131 13 34 chr21 11773538 11773709 -33133861 + AluSg SINE Alu 130 294 -16 238 235 104 26 chr21 11774198 11774372 -33133198 - L1ME LINE L1 -285 5836 5645 27 29 0 0 chr21 11774679 11774713 -33132857 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr21 11775562 11775588 -33131982 + AT_rich Low_complexity Low_complexity 1 26 0 673 210 45 13 chr21 11775793 11775950 -33131620 + AluJb SINE Alu 137 298 -14 758 200 0 0 chr21 11776082 11776207 -33131363 + FLAM_C SINE Alu 1 125 -8 1113 219 17 9 chr21 11776223 11776456 -33131114 + AluJo SINE Alu 1 235 -77 2451 70 0 7 chr21 11776505 11776804 -33130766 - AluY SINE Alu -14 297 1 1789 174 23 0 chr21 11776974 11777273 -33130297 + AluSx SINE Alu 1 306 -6 1653 207 6 6 chr21 11778417 11778769 -33128801 + L1MB3 LINE L1 5480 5831 -352 752 171 0 0 chr21 11778769 11778886 -33128684 + FLAM_C SINE Alu 1 117 -16 274 178 0 6 chr21 11778929 11778995 -33128575 + L1PB4 LINE L1 6091 6143 -13 9922 248 41 49 chr21 11779010 11782515 -33125055 + L1P4 LINE L1 116 3648 -3955 1964 149 24 0 chr21 11782515 11782811 -33124759 - AluSx SINE Alu -7 305 3 9922 248 41 49 chr21 11782811 11783423 -33124147 + L1P4 LINE L1 3648 4264 -3339 2097 135 0 3 chr21 11783423 11783720 -33123850 + AluSq SINE Alu 1 296 -17 9922 248 41 49 chr21 11783720 11784967 -33122603 + L1P4 LINE L1 4264 5520 -2083 7607 22 0 2 chr21 11784967 11786106 -33121464 + L1PA3 LINE L1 5043 6155 0 9922 248 41 49 chr21 11786106 11786179 -33121391 + L1P4 LINE L1 5520 5592 -2011 2169 117 10 0 chr21 11786179 11786486 -33121084 + AluSq SINE Alu 4 313 0 9922 248 41 49 chr21 11786486 11787289 -33120281 + L1P4 LINE L1 5592 7159 -444 290 211 27 19 chr21 11787333 11787434 -33120136 + L1MA6 LINE L1 5705 5802 -498 2340 165 47 2 chr21 11787532 11788022 -33119548 + L1MA6 LINE L1 5789 6300 0 1898 138 0 64 chr21 11788027 11788236 -33119334 + AluSx SINE Alu 1 183 -129 7658 26 0 0 chr21 11788236 11789938 -33117632 + L1PA3 LINE L1 4471 6155 0 1898 138 0 64 chr21 11789938 11790055 -33117515 + AluSx SINE Alu 183 306 -6 1468 247 32 9 chr21 11790055 11790506 -33117064 + L1MCa LINE L1 139 599 -5827 442 244 16 16 chr21 11790571 11790694 -33116876 + L1MCa LINE L1 573 695 -5731 2268 100 0 0 chr21 11791434 11791734 -33115836 + AluY SINE Alu 1 300 -11 183 80 0 0 chr21 11792097 11792122 -33115448 + (T)n Simple_repeat Simple_repeat 1 25 0 1942 118 52 0 chr21 11792919 11793208 -33114362 - AluSg SINE Alu -6 304 1 2042 186 72 20 chr21 11793481 11793954 -33113616 - L1MA9 LINE L1 -20 6292 5790 285 29 0 0 chr21 11793954 11793988 -33113582 + (CA)n Simple_repeat Simple_repeat 1 34 0 2042 186 72 20 chr21 11793988 11794015 -33113555 - L1MA9 LINE L1 -522 5790 5766 713 261 68 0 chr21 11794037 11794198 -33113372 - AluJo SINE Alu -54 258 87 1915 127 7 0 chr21 11794198 11794473 -33113097 - AluSg SINE Alu -33 277 1 2842 224 43 55 chr21 11794474 11795603 -33111967 - L1MA9 LINE L1 -443 5722 4581 2237 121 0 0 chr21 11795603 11795910 -33111660 - AluSc SINE Alu -2 307 1 2842 224 43 55 chr21 11795910 11796054 -33111516 - L1MA9 LINE L1 -1584 4581 4437 263 128 0 0 chr21 11796054 11796093 -33111477 + MADE1 DNA Mariner 1 39 -41 2842 224 43 55 chr21 11796093 11796260 -33111310 - L1MA9 LINE L1 -1728 4437 4251 357 43 0 0 chr21 11796644 11796691 -33110879 + (TG)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr21 11797157 11797187 -33110383 + AT_rich Low_complexity Low_complexity 1 30 0 1402 283 65 18 chr21 11797222 11797981 -33109589 + L1M4 LINE L1 3497 4290 -1856 1795 116 4 32 chr21 11798043 11798320 -33109250 + AluSx SINE Alu 37 305 -7 1418 148 124 16 chr21 11798530 11798825 -33108745 - AluSx SINE Alu 0 323 1 1018 133 128 24 chr21 11798825 11799036 -33108534 + MER6 DNA MER2_type 633 865 0 2259 104 0 7 chr21 11799581 11799879 -33107691 - AluSc SINE Alu -13 296 1 1969 143 14 0 chr21 11800150 11800450 -33107120 + AluSx SINE Alu 1 304 0 32 26 0 0 chr21 11800724 11800763 -33106807 + AT_rich Low_complexity Low_complexity 1 39 0 480 138 11 0 chr21 11800769 11800863 -33106707 + L1PB1 LINE L1 6056 6150 -1 182 91 30 0 chr21 11800881 11800914 -33106656 + A-rich Low_complexity Low_complexity 3 36 0 1625 197 3 10 chr21 11801134 11801433 -33106137 + AluJb SINE Alu 1 297 -15 420 206 0 0 chr21 11801434 11801507 -33106063 + L1MB8 LINE L1 5499 5571 -613 614 208 0 54 chr21 11801510 11801659 -33105911 - FLAM_A SINE Alu -1 141 1 2228 213 38 58 chr21 11801659 11802227 -33105343 + L1MB8 LINE L1 5555 6110 -68 1502 222 0 0 chr21 11802227 11802533 -33105037 - AluJb SINE Alu -6 306 1 2228 213 38 58 chr21 11802533 11802598 -33104972 + L1MB8 LINE L1 6110 6175 -3 2184 126 3 3 chr21 11802600 11802909 -33104661 + AluSx SINE Alu 1 309 -3 1652 176 0 23 chr21 11802924 11803226 -33104344 + AluJo SINE Alu 11 305 -7 1062 191 0 22 chr21 11803481 11803659 -33103911 - AluJb SINE Alu -137 175 2 953 235 113 34 chr21 11803662 11803730 -33103840 + MER21B LTR ERV1 426 487 -376 1605 187 3 23 chr21 11803730 11804030 -33103540 + AluJo SINE Alu 6 299 -13 953 235 113 34 chr21 11804030 11804314 -33103256 + MER21B LTR ERV1 487 806 -57 2065 130 0 10 chr21 11804595 11804896 -33102674 + AluSg SINE Alu 1 298 -12 1579 207 35 3 chr21 11805472 11805810 -33101760 + L1MB4 LINE L1 5480 5828 -355 691 215 0 0 chr21 11805812 11805933 -33101637 + FLAM_C SINE Alu 1 121 -22 522 0 0 0 chr21 11805933 11805991 -33101579 + (TA)n Simple_repeat Simple_repeat 2 59 0 621 140 53 0 chr21 11806003 11806117 -33101453 + L1MB4 LINE L1 5820 5939 -241 2328 87 0 3 chr21 11806118 11806417 -33101153 + AluY SINE Alu 1 298 -13 2071 143 0 0 chr21 11806452 11806752 -33100818 + AluSc SINE Alu 1 300 -9 182 203 0 47 chr21 11807720 11807784 -33099786 + GA-rich Low_complexity Low_complexity 2 62 0 324 64 0 0 chr21 11807843 11807890 -33099680 + (CA)n Simple_repeat Simple_repeat 2 48 0 242 143 20 0 chr21 11808051 11808100 -33099470 + CT-rich Low_complexity Low_complexity 2 51 0 225 284 99 62 chr21 11808213 11808291 -33099279 + MIR SINE MIR 29 103 -159 2393 172 24 0 chr21 11808291 11808709 -33098861 - MSTA LTR MaLR 0 428 1 225 284 99 62 chr21 11808709 11808792 -33098778 + MIR SINE MIR 103 196 -66 599 375 25 12 chr21 11809329 11809654 -33097916 - LTR16A LTR ERVL -12 438 110 21 36 0 0 chr21 11809765 11809793 -33097777 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr21 11810151 11810188 -33097382 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr21 11811547 11811592 -33095978 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 11811780 11811826 -33095744 + AT_rich Low_complexity Low_complexity 1 46 0 201 321 161 0 chr21 11813350 11813431 -33094139 + MIR SINE MIR 118 211 -51 552 250 222 0 chr21 11813923 11814103 -33093467 - MER58A DNA MER1_type -4 220 1 3671 117 11 9 chr21 11814440 11815003 -33092567 + LTR6A LTR ERV1 1 564 0 22 0 0 0 chr21 11816145 11816167 -33091403 + AT_rich Low_complexity Low_complexity 1 22 0 2200 91 30 0 chr21 11816886 11817183 -33090387 + AluY SINE Alu 1 306 -5 2044 131 7 3 chr21 11817491 11817796 -33089774 + AluSx SINE Alu 1 306 -6 2310 110 0 0 chr21 11818089 11818398 -33089172 - AluSg1 SINE Alu 0 309 1 362 217 75 0 chr21 11818867 11818987 -33088583 - L1MC4 LINE L1 0 8042 7914 448 294 53 4 chr21 11819039 11819301 -33088269 + L1M4 LINE L1 2890 3164 -2982 302 288 88 28 chr21 11819428 11819748 -33087822 - L1M4 LINE L1 -3267 2879 2541 * 5403 168 32 17 chr21 11819747 11820068 -33087502 - L1PB2 LINE L1 -4 6147 5832 267 31 0 0 chr21 11820068 11820100 -33087470 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2045 138 0 0 chr21 11820103 11820386 -33087184 - AluSq SINE Alu -30 283 1 5403 168 32 17 chr21 11820386 11821752 -33085818 - L1PB2 LINE L1 -320 5831 4430 586 173 40 6 chr21 11821776 11821949 -33085621 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 604 138 63 6 chr21 11821928 11822264 -33085306 + (TATATG)n Simple_repeat Simple_repeat 1 355 0 738 178 29 0 chr21 11822319 11822600 -33084970 + (TA)n Simple_repeat Simple_repeat 1 289 0 594 173 29 6 chr21 11822613 11822786 -33084784 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 2410 207 56 5 chr21 11822786 11823362 -33084208 - L1PB2 LINE L1 -1747 4399 3795 505 290 39 0 chr21 11823358 11823565 -33084005 - L1M4 LINE L1 -3597 2549 2335 * 464 291 17 23 chr21 11823609 11823781 -33083789 + L1MEc LINE L1 56 226 -6170 2910 179 5 4 chr21 11823917 11824469 -33083101 - L1PA12 LINE L1 -1131 5015 4463 5886 113 17 2 chr21 11824471 11825609 -33081961 + L1PA12 LINE L1 5026 6168 0 247 326 0 23 chr21 11825697 11825783 -33081787 - L2 LINE L2 -1 3271 3188 276 77 0 0 chr21 11825814 11825853 -33081717 + (TA)n Simple_repeat Simple_repeat 1 39 0 3565 193 59 90 chr21 11825908 11827511 -33080059 + L1M1 LINE L1 3142 4700 -2865 1620 157 15 7 chr21 11827522 11827796 -33079774 + AluSx SINE Alu 1 276 -36 744 190 36 26 chr21 11827796 11827981 -33079589 - MER41-int LTR ERV1 -6092 2028 1839 * 1415 188 22 4 chr21 11827980 11828251 -33079319 - MER41-int LTR ERV1 -3592 2354 2079 300 283 43 29 chr21 11828862 11829000 -33078570 + L1M1 LINE L1 4620 4759 -2806 387 250 0 24 chr21 11829487 11829611 -33077959 + GA-rich Low_complexity Low_complexity 3 123 0 471 235 77 81 chr21 11830749 11831212 -33076358 - HSREP522 Satellite telomeric -103 461 1 4648 198 38 62 chr21 11833135 11833856 -33073714 - L1 LINE L1 -814 6751 6076 2128 124 0 0 chr21 11833856 11834154 -33073416 - AluSg SINE Alu -12 298 1 4648 198 38 62 chr21 11834154 11834811 -33072759 - L1 LINE L1 -1489 6076 5405 1928 282 70 75 chr21 11834794 11835017 -33072553 - L1 LINE L1 -5176 2389 2166 * 2112 143 0 0 chr21 11835017 11835317 -33072253 - AluSx SINE Alu -10 302 3 1928 282 70 75 chr21 11835317 11836758 -33070812 - L1 LINE L1 -5399 2166 17 * 2692 280 60 12 chr21 11836756 11838033 -33069537 - L1M4 LINE L1 -1635 4568 3231 1985 142 3 0 chr21 11838080 11838383 -33069187 - AluSx SINE Alu -8 304 1 1531 211 3 10 chr21 11839560 11839863 -33067707 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr21 11840100 11840121 -33067449 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 11845804 11845854 -33061716 + AT_rich Low_complexity Low_complexity 1 50 0 30 45 0 0 chr21 11847326 11847370 -33060200 + AT_rich Low_complexity Low_complexity 1 44 0 748 176 24 6 chr21 11847560 11847730 -33059840 + L1MB2 LINE L1 5998 6170 -1 1989 138 0 0 chr21 11847834 11848116 -33059454 + AluSx SINE Alu 3 284 -28 231 88 0 0 chr21 11848116 11848150 -33059420 + (CATA)n Simple_repeat Simple_repeat 2 35 0 455 136 0 0 chr21 11848468 11848534 -33059036 + AluS SINE Alu 1 66 -246 5309 228 19 13 chr21 11848535 11849994 -33057576 - L1PBb LINE L1 -3870 2333 777 2148 234 54 6 chr21 11851331 11852012 -33055558 - L1M4 LINE L1 -3119 3027 2314 483 262 67 20 chr21 11852029 11852178 -33055392 + MER31B LTR ERV1 85 240 -226 3601 113 6 2 chr21 11852178 11852681 -33054889 + MER41A-int LTR ERV1 5439 5943 -3 3816 105 20 2 chr21 11852681 11853223 -33054347 + MER41A LTR ERV1 1 552 -2 364 252 54 23 chr21 11853227 11853424 -33054146 + L1ME2 LINE L1 5843 6040 -126 923 230 14 19 chr21 11853535 11853748 -33053822 + MER58C DNA MER1_type 4 215 0 2739 149 50 28 chr21 11853839 11854374 -33053196 - LTR10A LTR ERV1 -62 547 1 12739 207 36 59 chr21 11854421 11857443 -33050127 - LTR10A-int LTR ERV1 -1 6648 3695 2316 60 6 0 chr21 11857419 11857734 -33049836 - LTR10A-int LTR ERV1 -4319 2577 2261 * 235 331 123 6 chr21 11858003 11858166 -33049404 + MIR SINE MIR 44 225 -37 919 242 85 7 chr21 11860974 11861267 -33046303 + L1ME3A LINE L1 5854 6169 -1 1559 172 52 43 chr21 11862108 11862434 -33045136 - MER44D DNA MER2_type -6 603 5 240 261 46 0 chr21 11863050 11863115 -33044455 - L2 LINE L2 -1 3271 3204 23 0 0 0 chr21 11864605 11864628 -33042942 + AT_rich Low_complexity Low_complexity 1 23 0 618 144 0 76 chr21 11864831 11864963 -33042607 + L1PB3 LINE L1 6033 6154 0 25 0 0 0 chr21 11864963 11864988 -33042582 + AT_rich Low_complexity Low_complexity 1 25 0 186 370 20 20 chr21 11864999 11865099 -33042471 + MIR SINE MIR 33 132 -76 24 32 0 0 chr21 11865186 11865217 -33042353 + AT_rich Low_complexity Low_complexity 1 31 0 202 91 45 23 chr21 11865367 11865411 -33042159 + (TCTCTG)n Simple_repeat Simple_repeat 1 45 0 1526 208 31 29 chr21 11866154 11866567 -33041003 - L1MC3 LINE L1 -1722 6063 5650 821 287 38 16 chr21 11866593 11866989 -33040581 - L1MEc LINE L1 -3655 2885 2482 460 276 137 18 chr21 11867033 11867770 -33039800 - L1MEc LINE L1 -4582 1958 1153 21 0 0 0 chr21 11867889 11867910 -33039660 + AT_rich Low_complexity Low_complexity 1 21 0 2180 103 3 3 chr21 11868012 11868428 -33039142 - AluSp SINE Alu 0 416 1 231 36 0 0 chr21 11868627 11868655 -33038915 + (TTG)n Simple_repeat Simple_repeat 3 30 0 395 347 45 35 chr21 11868669 11868957 -33038613 - L1MEc LINE L1 -6069 652 362 2707 29 3 0 chr21 11868970 11869279 -33038291 - AluY SINE Alu -1 310 1 3499 212 44 23 chr21 11869338 11870431 -33037139 - L1MB7 LINE L1 -26 6656 5540 2445 232 65 33 chr21 11870418 11871009 -33036561 - L1MB7 LINE L1 -3174 3470 2899 * 2195 19 16 0 chr21 11871009 11871267 -33036303 + L1PA4 LINE L1 5878 6139 -16 270 0 0 0 chr21 11871267 11871297 -33036273 + (TA)n Simple_repeat Simple_repeat 1 30 0 2445 232 65 33 chr21 11871297 11871846 -33035724 - L1MB7 LINE L1 -3744 2900 2281 445 211 84 36 chr21 11871878 11872044 -33035526 - L1MB7 LINE L1 -4489 2157 1984 541 247 25 12 chr21 11872058 11872220 -33035350 - L1MB7 LINE L1 -6377 165 2 2607 159 16 52 chr21 11872256 11872808 -33034762 + L1PA16 LINE L1 5635 6166 0 302 289 44 88 chr21 11873142 11873460 -33034110 - L1M4 LINE L1 -2230 3916 3613 227 247 141 0 chr21 11873716 11873801 -33033769 - L1ME LINE L1 -469 5652 5556 186 214 89 0 chr21 11874123 11874179 -33033391 - MIR SINE MIR -65 197 137 31 26 0 0 chr21 11874339 11874377 -33033193 + AT_rich Low_complexity Low_complexity 1 38 0 625 172 0 0 chr21 11874377 11874476 -33033094 - AluJb SINE Alu -30 282 184 23 0 0 0 chr21 11874828 11874851 -33032719 + AT_rich Low_complexity Low_complexity 1 23 0 192 352 109 8 chr21 11875662 11875790 -33031780 + L2 LINE L2 2357 2497 -817 1241 196 75 48 chr21 11875996 11876327 -33031243 - MER2 DNA MER2_type 0 345 6 357 309 61 68 chr21 11876600 11876878 -33030692 + L2 LINE L2 3038 3313 0 569 188 45 8 chr21 11876957 11877090 -33030480 - L1MD2 LINE L1 -425 5934 5797 644 180 8 39 chr21 11877244 11877372 -33030198 + MER63 DNA MER1_type 1 750 -86 244 313 75 25 chr21 11877561 11877721 -33029849 + MLT1H LTR MaLR 382 549 0 558 303 136 27 chr21 11878696 11879026 -33028544 + LTR33 LTR ERVL 33 398 -123 227 270 67 22 chr21 11879311 11879400 -33028170 + L2 LINE L2 2282 2374 -940 423 32 0 32 chr21 11879551 11879613 -33027957 + L1PA13 LINE L1 6102 6161 -2 8082 216 89 18 chr21 11879613 11882392 -33025178 - L1 LINE L1 -1813 5354 2306 2089 305 23 35 chr21 11882475 11883298 -33024272 - L1 LINE L1 -5952 1216 4 234 390 9 0 chr21 11883816 11883921 -33023649 + L2 LINE L2 3204 3309 -4 244 200 29 57 chr21 11883966 11884036 -33023534 - L1ME3A LINE L1 -5 6165 6098 1514 259 55 28 chr21 11884049 11884521 -33023049 - MLT1D LTR MaLR 0 505 21 1389 262 85 49 chr21 11884644 11885626 -33021944 - L1ME3A LINE L1 -183 5987 4967 2447 166 0 16 chr21 11885828 11886273 -33021297 - L1PA15 LINE L1 -5 6160 5723 587 191 25 38 chr21 11886401 11886558 -33021012 - L1ME3A LINE L1 -1453 4693 4539 2805 156 14 23 chr21 11886672 11887186 -33020384 - L1MA4 LINE L1 -159 6141 5633 1864 62 0 0 chr21 11887187 11887412 -33020158 - AluY SINE Alu -73 238 14 3720 164 24 47 chr21 11887413 11887868 -33019702 + L1MA5A LINE L1 5515 5945 -352 2018 111 11 4 chr21 11887868 11888167 -33019403 + AluSx SINE Alu 1 301 0 3720 164 24 47 chr21 11888167 11888511 -33019059 + L1MA5A LINE L1 5945 6296 -1 329 243 101 14 chr21 11888518 11888666 -33018904 - Charlie4a DNA MER1_type -102 406 246 6035 173 3 0 chr21 11888670 11889740 -33017830 + L1P LINE L1 3865 4937 -1209 235 331 48 24 chr21 11889762 11889886 -33017684 - L2 LINE L2 -724 2590 2464 416 340 45 20 chr21 11890915 11891115 -33016455 - MIR SINE MIR -1 261 57 227 333 13 0 chr21 11891180 11891255 -33016315 + L2 LINE L2 3229 3304 -9 7596 27 0 0 chr21 11891416 11892428 -33015142 - L1PA3 LINE L1 -3 6152 5141 17556 34 7 1 chr21 11892429 11894582 -33012988 + L1P LINE L1 2932 5098 -1048 307 250 65 65 chr21 11895211 11895335 -33012235 - MIR SINE MIR -122 140 17 23 0 0 0 chr21 11897889 11897912 -33009658 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr21 11898519 11898569 -33009001 + AT_rich Low_complexity Low_complexity 1 50 0 1624 176 6 35 chr21 11898824 11899143 -33008427 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr21 11899664 11899694 -33007876 + AT_rich Low_complexity Low_complexity 1 30 0 2081 97 3 52 chr21 11899823 11900131 -33007439 + AluSx SINE Alu 1 293 -19 2231 126 0 0 chr21 11900266 11900568 -33007002 + AluSg SINE Alu 1 302 -8 23 0 0 0 chr21 11901193 11901216 -33006354 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr21 11901981 11902005 -33005565 + AT_rich Low_complexity Low_complexity 1 24 0 1435 183 121 0 chr21 11902465 11902771 -33004799 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr21 11902916 11902955 -33004615 + AT_rich Low_complexity Low_complexity 1 39 0 266 235 31 31 chr21 11902958 11903056 -33004514 + L1ME1 LINE L1 6010 6107 -59 57 79 0 0 chr21 11903216 11903343 -33004227 + AT_rich Low_complexity Low_complexity 1 127 0 1657 165 219 19 chr21 11903700 11904125 -33003445 - L1MA4A LINE L1 -23 6280 5771 2614 174 22 8 chr21 11904486 11905369 -33002201 - L1MA4A LINE L1 -556 5747 4853 274 175 23 5 chr21 11905505 11905576 -33001994 + MLT1D LTR MaLR 57 98 -407 12848 85 5 1 chr21 11905576 11908174 -32999396 + L1PA7 LINE L1 3542 6151 -3 274 175 23 5 chr21 11908174 11908185 -32999385 + MLT1D LTR MaLR 98 107 -398 * 831 211 57 14 chr21 11908180 11908389 -32999181 + MER96B DNA MER1_type? 177 394 -23 23 0 0 0 chr21 11908629 11908652 -32998918 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chr21 11908669 11908704 -32998866 + AT_rich Low_complexity Low_complexity 1 35 0 206 309 11 21 chr21 11908840 11908934 -32998636 + A-rich Low_complexity Low_complexity 2 94 0 3050 130 11 6 chr21 11909025 11909495 -32998075 + MER84 LTR ERVI 36 507 0 1035 99 0 19 chr21 11910009 11910170 -32997400 + L1P4 LINE L1 5333 5490 -671 2337 57 3 41 chr21 11910170 11910485 -32997085 + AluY SINE Alu 1 303 -8 794 276 90 33 chr21 11910650 11911049 -32996521 - L1M4 LINE L1 -1822 4324 3903 927 111 90 0 chr21 11911049 11911074 -32996496 - AluY SINE Alu -154 157 136 482 0 0 17 chr21 11911074 11911133 -32996437 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 927 111 90 0 chr21 11911133 11911251 -32996319 - AluY SINE Alu -175 136 1 381 22 0 0 chr21 11912419 11912465 -32995105 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 77 0 0 chr21 11912620 11912646 -32994924 + (A)n Simple_repeat Simple_repeat 1 26 0 2199 128 0 10 chr21 11912648 11912961 -32994609 + AluSx SINE Alu 1 310 -2 376 92 231 0 chr21 11915062 11915127 -32992443 + MADE1 DNA Mariner 1 80 0 597 266 59 25 chr21 11916532 11916735 -32990835 - MIR SINE MIR 0 262 53 820 221 23 9 chr21 11916860 11917077 -32990493 + L1MC3 LINE L1 7566 7785 0 2233 105 3 0 chr21 11917087 11917382 -32990188 + AluY SINE Alu 1 296 -15 1953 69 0 8 chr21 11917918 11918178 -32989392 + AluY SINE Alu 54 311 0 266 0 29 0 chr21 11918455 11918489 -32989081 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 179 0 0 chr21 11918878 11918917 -32988653 - MER58A DNA MER1_type 0 224 186 2537 61 0 3 chr21 11918999 11919311 -32988259 + AluY SINE Alu 1 311 0 610 269 48 12 chr21 11919365 11919532 -32988038 - MER58A DNA MER1_type -45 179 7 256 207 98 37 chr21 11919953 11920035 -32987535 - MLT1H LTR MaLR 0 549 463 197 242 109 70 chr21 11920491 11920619 -32986951 + MIR SINE MIR 120 252 -10 3221 277 37 31 chr21 11921126 11921551 -32986019 + L1M4 LINE L1 2252 2673 -3473 2005 110 32 36 chr21 11921551 11921678 -32985892 + AluSx SINE Alu 1 127 -185 2381 88 13 0 chr21 11921678 11921984 -32985586 + AluSp SINE Alu 1 310 -3 2005 110 32 36 chr21 11921984 11922165 -32985405 + AluSx SINE Alu 127 308 -4 3221 277 37 31 chr21 11922165 11922393 -32985177 + L1M4 LINE L1 2673 2898 -3248 2924 104 15 11 chr21 11922393 11922854 -32984716 - L1PA10 LINE L1 0 6168 5706 3221 277 37 31 chr21 11922854 11923760 -32983810 + L1M4 LINE L1 2898 3821 -2325 273 172 0 0 chr21 11923874 11923938 -32983632 + CT-rich Low_complexity Low_complexity 1 64 0 2066 73 51 0 chr21 11923938 11924212 -32983358 - AluY SINE Alu -23 288 1 227 190 50 30 chr21 11925054 11925154 -32982416 + (CACG)n Simple_repeat Simple_repeat 2 103 0 1834 160 3 3 chr21 11927102 11927395 -32980175 - AluSg1 SINE Alu -15 294 2 2030 118 7 4 chr21 11927569 11927883 -32979687 + AluSg SINE Alu 1 315 0 227 270 104 9 chr21 11928075 11928190 -32979380 + L1ME LINE L1 5689 5814 -307 2527 114 13 8 chr21 11929077 11929470 -32978100 + L1PA12 LINE L1 5774 6168 0 537 266 0 27 chr21 11929792 11929976 -32977594 - MER104 DNA MER2_type -1 179 1 597 284 93 40 chr21 11930078 11930326 -32977244 - MIR SINE MIR -1 261 4 297 0 0 0 chr21 11931518 11931551 -32976019 + (TG)n Simple_repeat Simple_repeat 2 34 0 244 374 36 36 chr21 11932051 11932190 -32975380 - MER5B DNA MER1_type 0 178 40 741 169 0 0 chr21 11932195 11932313 -32975257 + FLAM_A SINE Alu 1 118 -15 804 205 189 35 chr21 11932487 11932746 -32974824 - AluSg SINE Alu -1 299 1 201 246 123 18 chr21 11933366 11933423 -32974147 - L2 LINE L2 -50 3222 3160 24 32 0 0 chr21 11933893 11933924 -32973646 + AT_rich Low_complexity Low_complexity 1 31 0 2648 16 0 0 chr21 11934506 11934811 -32972759 + L1PA2 LINE L1 5850 6154 -1 337 313 103 15 chr21 11934869 11935064 -32972506 + MIR SINE MIR 20 231 -31 575 189 9 9 chr21 11936956 11937062 -32970508 + U6 snRNA snRNA 1 106 -1 251 391 53 0 chr21 11937753 11937904 -32969666 - MIR SINE MIR -47 215 57 3022 175 8 8 chr21 11938286 11938813 -32968757 - MER1A DNA MER1_type 0 527 1 304 192 0 0 chr21 11939042 11939094 -32968476 - MER91B DNA MER1_type -60 130 79 24 32 0 0 chr21 11939571 11939602 -32967968 + AT_rich Low_complexity Low_complexity 1 31 0 669 289 185 15 chr21 11940075 11940470 -32967100 - MLT1L LTR MaLR -153 462 1 188 324 28 0 chr21 11940476 11940547 -32967023 - L2 LINE L2 -565 2749 2677 931 224 47 47 chr21 11940552 11940766 -32966804 - MER58A DNA MER1_type -3 221 8 188 244 37 49 chr21 11941097 11941179 -32966391 - L2 LINE L2 -787 2527 2447 2038 153 7 0 chr21 11942544 11942851 -32964719 + AluSc SINE Alu 1 309 0 1488 189 137 53 chr21 11942962 11943454 -32964116 - LTR61 LTR ERV1 0 595 1 23 33 0 0 chr21 11943838 11943868 -32963702 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr21 11943948 11943998 -32963572 + AT_rich Low_complexity Low_complexity 1 50 0 54 49 0 0 chr21 11945041 11945123 -32962447 + AT_rich Low_complexity Low_complexity 1 82 0 180 355 9 45 chr21 11945535 11945645 -32961925 + MIR3 SINE MIR 90 195 -13 229 252 99 86 chr21 11946588 11946711 -32960859 + L1ME LINE L1 5387 5514 -607 2057 147 6 11 chr21 11946711 11947058 -32960512 - L1PA15 LINE L1 0 6165 5821 229 252 99 86 chr21 11947058 11947085 -32960485 + L1ME LINE L1 5514 5539 -582 355 200 0 0 chr21 11947669 11947734 -32959836 - MER58A DNA MER1_type 0 224 160 886 201 25 0 chr21 11947738 11947897 -32959673 - AluJb SINE Alu -18 294 132 482 198 11 0 chr21 11947917 11948008 -32959562 - MER58A DNA MER1_type -15 92 1 2606 279 136 17 chr21 11948609 11948981 -32958589 + L2 LINE L2 1777 2104 -1209 2167 133 0 0 chr21 11948981 11949282 -32958288 - AluSx SINE Alu -11 301 1 2606 279 136 17 chr21 11949282 11950041 -32957529 + L2 LINE L2 2104 3040 -273 414 278 143 54 chr21 11950322 11950581 -32956989 + L2 LINE L2 3031 3312 -1 22 0 0 0 chr21 11950715 11950737 -32956833 + AT_rich Low_complexity Low_complexity 1 22 0 1928 156 3 0 chr21 11950843 11951138 -32956432 - AluSx SINE Alu -16 296 1 23 0 0 0 chr21 11951143 11951166 -32956404 + AT_rich Low_complexity Low_complexity 1 23 0 1549 148 72 30 chr21 11952052 11952383 -32955187 + THE1C LTR MaLR 5 349 -26 3453 216 40 10 chr21 11952395 11953016 -32954554 - L1PA15 LINE L1 -378 5776 5175 207 0 0 0 chr21 11953016 11953039 -32954531 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3453 216 40 10 chr21 11953039 11953987 -32953583 - L1PA15 LINE L1 -979 5175 4125 3067 143 24 10 chr21 11954227 11954731 -32952839 + MER1A DNA MER1_type 1 511 -18 204 125 0 0 chr21 11955121 11955153 -32952417 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr21 11955161 11955181 -32952389 + (CA)n Simple_repeat Simple_repeat 2 21 0 327 25 0 0 chr21 11955903 11955943 -32951627 + (TG)n Simple_repeat Simple_repeat 2 41 0 879 178 0 0 chr21 11955948 11956094 -32951476 - AluSg/x SINE Alu -31 279 134 7754 184 6 1 chr21 11957284 11958645 -32948925 + L1PA12 LINE L1 637 2004 -5577 256 221 0 44 chr21 11958670 11958738 -32948832 + L1PA13 LINE L1 403 467 -6320 325 267 0 0 chr21 11958746 11958821 -32948749 - L1PA13 LINE L1 -6244 1330 1256 460 143 0 0 chr21 11958830 11958900 -32948670 - L1PA13 LINE L1 -6251 1330 1261 1300 296 191 8 chr21 11958920 11959527 -32948043 + L1PA13 LINE L1 482 1199 -5588 2868 205 0 15 chr21 11959587 11960186 -32947384 + L1PA13 LINE L1 1395 1984 -4803 628 205 0 0 chr21 11960229 11960351 -32947219 - L1PA13 LINE L1 -6177 610 489 * 4184 177 23 8 chr21 11960343 11961358 -32946212 + L1PA13 LINE L1 1994 3039 -3758 2473 87 0 0 chr21 11961358 11961668 -32945902 + AluY SINE Alu 1 310 -1 4184 177 23 8 chr21 11961668 11961683 -32945887 + L1PA13 LINE L1 3039 3052 -3745 2003 192 135 55 chr21 11961684 11962632 -32944938 + MER4-int LTR ERV1 29 1097 -5501 6071 90 6 0 chr21 11962640 11963711 -32943859 - L1PA7 LINE L1 -3 6151 5051 3157 113 8 4 chr21 11963737 11964250 -32943320 + L1P LINE L1 4555 5069 -1077 2452 142 2 2 chr21 11968101 11968538 -32939032 - L1P LINE L1 -3745 2401 1965 1334 219 13 36 chr21 11968708 11969010 -32938560 - AluJo SINE Alu -16 296 2 1286 201 12 5 chr21 11970014 11970483 -32937087 + L1P4 LINE L1 5027 5496 -670 28 0 0 0 chr21 11970483 11970511 -32937059 + AT_rich Low_complexity Low_complexity 1 28 0 2110 114 0 16 chr21 11970621 11970927 -32936643 + AluSg SINE Alu 1 301 -9 587 282 123 33 chr21 11971005 11971764 -32935806 - L1MEc LINE L1 -4326 2796 1970 874 251 101 60 chr21 11972017 11972554 -32935016 - L1MEc LINE L1 -4890 1533 975 228 67 0 0 chr21 11972573 11972603 -32934967 + (TG)n Simple_repeat Simple_repeat 1 30 0 183 229 86 57 chr21 11973945 11974015 -32933555 - L2 LINE L2 -1273 2041 1970 296 299 195 6 chr21 11974050 11974224 -32933346 - MIR SINE MIR 0 262 56 818 37 0 9 chr21 11974418 11974525 -32933045 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1458 176 3 84 chr21 11974528 11974851 -32932719 - AluJb SINE Alu -15 297 1 550 169 73 32 chr21 11975371 11975495 -32932075 - MLT1A1 LTR MaLR -216 149 21 2307 65 58 0 chr21 11975741 11976035 -32931535 - AluSp SINE Alu -2 311 1 2223 110 7 0 chr21 11976273 11976563 -32931007 - AluSq SINE Alu -21 292 1 422 286 17 55 chr21 11976694 11976910 -32930660 - MIR3 SINE MIR -53 209 1 2111 147 0 0 chr21 11977823 11978135 -32929435 - AluSx SINE Alu 0 312 1 801 103 0 0 chr21 11978490 11978597 -32928973 + AluSc SINE Alu 1 107 -202 1950 203 40 4 chr21 11978607 11979084 -32928486 - L1MB3 LINE L1 -44 6139 5646 647 232 173 53 chr21 11979684 11980153 -32927417 + L1M4 LINE L1 4411 4935 -1211 337 301 20 0 chr21 11980220 11980373 -32927197 + L1MA10 LINE L1 6169 6324 -10 442 267 93 28 chr21 11980612 11980859 -32926711 + LTR37B LTR ERV1 198 460 -8 314 271 150 23 chr21 11981374 11981507 -32926063 + L1M2 LINE L1 815 964 -5885 320 281 23 6 chr21 11982221 11982392 -32925178 + (CA)n Simple_repeat Simple_repeat 1 174 0 251 326 11 0 chr21 11982411 11982586 -32924984 + (CA)n Simple_repeat Simple_repeat 1 177 0 2201 71 0 3 chr21 11982815 11983109 -32924461 - AluY SINE Alu -18 293 1 3054 51 0 0 chr21 11984298 11984748 -32922822 + L1P2 LINE L1 4989 5438 -716 6266 143 29 12 chr21 11986237 11987807 -32919763 - L1MA1 LINE L1 -9 6293 4687 2061 142 3 0 chr21 11987957 11988253 -32919317 + AluSq SINE Alu 1 297 -16 1044 238 74 65 chr21 11988574 11989157 -32918413 - L1ME1 LINE L1 -19 6147 5560 298 0 0 0 chr21 11990335 11990374 -32917196 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr21 11990374 11990401 -32917169 + AT_rich Low_complexity Low_complexity 1 27 0 1780 200 58 28 chr21 11990935 11991436 -32916134 - L1MA7 LINE L1 -7 6284 5769 2305 208 60 28 chr21 11991440 11992088 -32915482 - L1MB8 LINE L1 -2 6176 5508 * 4084 190 37 16 chr21 11992082 11993603 -32913967 - L1MA7 LINE L1 -510 5781 4229 21 0 0 0 chr21 11994912 11994933 -32912637 + AT_rich Low_complexity Low_complexity 1 21 0 246 156 0 0 chr21 11996059 11996104 -32911466 + A-rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr21 11996809 11996852 -32910718 + AT_rich Low_complexity Low_complexity 1 43 0 454 230 0 9 chr21 11996877 11996990 -32910580 - L1MA7 LINE L1 -1904 4242 4131 186 43 0 0 chr21 11998287 11998310 -32909260 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 202 245 102 92 chr21 12000407 12000505 -32907065 + L3 LINE CR1 364 462 -1115 405 268 142 21 chr21 12000779 12000931 -32906639 - MIR SINE MIR -63 145 34 199 158 26 0 chr21 12000956 12000994 -32906576 + MIR SINE MIR 102 140 -122 201 196 0 0 chr21 12001864 12001910 -32905660 + (CA)n Simple_repeat Simple_repeat 2 47 0 249 354 35 81 chr21 12002697 12002957 -32904613 - L2 LINE L2 -29 3243 2996 456 255 49 33 chr21 12002975 12003159 -32904411 + MLT1L LTR MaLR 402 588 -27 363 217 287 0 chr21 12003270 12003385 -32904185 + MIR SINE MIR 18 165 -97 1324 224 4 4 chr21 12003786 12004063 -32903507 - AluJb SINE Alu -35 277 1 25 31 0 0 chr21 12004144 12004176 -32903394 + AT_rich Low_complexity Low_complexity 1 32 0 1832 152 121 21 chr21 12004764 12005153 -32902417 + MSTA LTR MaLR 1 428 0 1624 178 3 29 chr21 12005482 12005791 -32901779 + AluJb SINE Alu 6 306 -6 216 0 0 0 chr21 12006405 12006429 -32901141 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1026 199 5 0 chr21 12006547 12006733 -32900837 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr21 12007507 12007529 -32900041 + AT_rich Low_complexity Low_complexity 1 22 0 466 282 87 46 chr21 12007648 12007874 -32899696 + L1ME4a LINE L1 5535 5779 -342 1577 185 3 3 chr21 12007874 12008161 -32899409 - AluSx SINE Alu -24 288 2 466 282 87 46 chr21 12008161 12008257 -32899313 + L1ME4a LINE L1 5779 5870 -251 263 324 27 47 chr21 12008351 12008499 -32899071 + MIR SINE MIR 117 261 -1 228 100 0 0 chr21 12008529 12008569 -32899001 + (CA)n Simple_repeat Simple_repeat 1 40 0 350 246 113 56 chr21 12008585 12008727 -32898843 + L1ME4a LINE L1 5969 6118 -3 1383 224 10 3 chr21 12008769 12009068 -32898502 + AluJo SINE Alu 1 301 -11 2303 132 103 139 chr21 12009152 12009742 -32897828 - LTR4 LTR ERV1 -2 594 26 243 152 0 0 chr21 12010870 12010916 -32896654 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 673 237 150 5 chr21 12011011 12011218 -32896352 + MIR SINE MIR 20 256 -6 507 200 98 86 chr21 12011679 12011857 -32895713 + MLT1D LTR MaLR 6 193 -289 1149 196 0 48 chr21 12011859 12012130 -32895440 + AluJb SINE Alu 5 262 -50 1370 221 55 52 chr21 12016062 12016591 -32890979 + MER67C LTR ERV1 22 514 0 33 43 0 0 chr21 12016867 12016914 -32890656 + AT_rich Low_complexity Low_complexity 1 47 0 265 318 47 0 chr21 12017038 12017145 -32890425 - MIR SINE MIR -71 191 80 409 257 0 19 chr21 12017293 12017398 -32890172 + L1M3e LINE L1 466 568 -6921 538 342 39 19 chr21 12017463 12017720 -32889850 + L1M3e LINE L1 1414 1675 -4890 8849 241 35 17 chr21 12017957 12020813 -32886757 + L1M3e LINE L1 2007 4810 -2755 1454 188 14 10 chr21 12020813 12021105 -32886465 + AluJo SINE Alu 1 293 -19 792 57 48 0 chr21 12021113 12021237 -32886333 + GA-rich Low_complexity Low_complexity 3 132 0 8849 241 35 17 chr21 12021237 12022368 -32885202 + L1M3e LINE L1 4816 6071 -1494 429 293 11 6 chr21 12024650 12024824 -32882746 + (CA)n Simple_repeat Simple_repeat 1 175 0 269 325 0 0 chr21 12024851 12024965 -32882605 + (CA)n Simple_repeat Simple_repeat 1 114 0 1110 128 5 32 chr21 12025981 12026168 -32881402 + MER49 LTR ERV1 715 896 -27 22 56 0 0 chr21 12027759 12027795 -32879775 + AT_rich Low_complexity Low_complexity 1 36 0 38 39 0 0 chr21 12028555 12028607 -32878963 + AT_rich Low_complexity Low_complexity 1 52 0 2053 111 6 22 chr21 12028760 12029075 -32878495 - AluSp SINE Alu -1 312 3 669 296 47 18 chr21 12029339 12029677 -32877893 - L1MEc LINE L1 -3614 2812 2465 460 228 232 49 chr21 12029726 12029972 -32877598 - L1MEc LINE L1 -4209 2398 2108 247 326 23 32 chr21 12029995 12030213 -32877357 - L1MEc LINE L1 -4503 1923 1708 21 0 0 0 chr21 12030884 12030905 -32876665 + AT_rich Low_complexity Low_complexity 1 21 0 259 293 38 19 chr21 12031773 12031879 -32875691 + MERVL LTR ERVL 2855 2962 -2523 920 79 0 16 chr21 12035914 12036031 -32871539 + AluY SINE Alu 1 117 -194 215 31 31 0 chr21 12036031 12036063 -32871507 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 28 79 0 0 chr21 12036242 12036305 -32871265 + AT_rich Low_complexity Low_complexity 1 63 0 316 106 85 0 chr21 12038435 12038482 -32869088 + AluJ/FRAM SINE Alu 229 279 -23 200 31 62 0 chr21 12038485 12038517 -32869053 + A-rich Low_complexity Low_complexity 2 35 0 2013 120 0 3 chr21 12038520 12038820 -32868750 + AluSp SINE Alu 1 299 -14 1627 166 34 7 chr21 12039132 12039427 -32868143 - AluJb SINE Alu -9 303 1 212 0 36 0 chr21 12039511 12039539 -32868031 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 312 232 71 30 chr21 12039581 12039680 -32867890 + MIR SINE MIR 112 214 -48 2101 103 3 0 chr21 12039686 12039988 -32867582 - AluSx SINE Alu -9 303 1 443 244 128 45 chr21 12040004 12040160 -32867410 - L2 LINE L2 -26 3287 3119 1953 134 10 3 chr21 12040425 12040732 -32866838 + AluJb SINE Alu 4 312 0 188 330 11 22 chr21 12040782 12040873 -32866697 - MIR SINE MIR -57 205 116 313 179 107 80 chr21 12042376 12042488 -32865082 + L1MCa LINE L1 1957 2071 -4355 260 291 14 7 chr21 12042494 12042642 -32864928 + (TA)n Simple_repeat Simple_repeat 1 149 0 1141 130 16 0 chr21 12042674 12042858 -32864712 - AluSp SINE Alu -10 303 117 1597 231 47 42 chr21 12042858 12043452 -32864118 - L1M4 LINE L1 -921 5225 4629 21339 102 17 5 chr21 12043567 12047847 -32859723 + L1PA6 LINE L1 13 4337 -1809 4425 81 35 23 chr21 12047848 12048955 -32858615 + MER11A LTR ERVK 1 1266 0 8219 66 4 8 chr21 12048956 12050776 -32856794 + L1PA6 LINE L1 4334 6152 -2 2236 111 0 3 chr21 12051189 12051486 -32856084 - AluSg SINE Alu -14 296 1 1624 324 77 29 chr21 12051631 12052732 -32854838 - L2 LINE L2 -8 3305 2157 653 164 0 49 chr21 12053120 12053242 -32854328 - AluJb SINE Alu -195 117 2 5067 12 0 7 chr21 12053467 12054039 -32853531 - L1HS LINE L1 -1 6154 5587 246 62 0 0 chr21 12054039 12054071 -32853499 + (A)n Simple_repeat Simple_repeat 1 32 0 544 95 0 12 chr21 12054269 12054353 -32853217 - L1PB4 LINE L1 -2 6154 6072 610 175 38 60 chr21 12054416 12054599 -32852971 - L1MC5 LINE L1 -395 7566 7388 274 143 150 88 chr21 12054594 12054741 -32852829 + L1MC5 LINE L1 7575 7730 -231 * 4771 187 30 28 chr21 12055393 12056282 -32851288 + MER54A LTR ERVL 10 900 -1 25 99 0 0 chr21 12057194 12057275 -32850295 + AT_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr21 12058571 12058592 -32848978 + AT_rich Low_complexity Low_complexity 1 21 0 249 258 30 0 chr21 12058592 12058658 -32848912 + MIR SINE MIR 64 131 -131 526 269 161 8 chr21 12059648 12059897 -32847673 + LTR16A1 LTR ERVL 168 454 -3 1711 194 148 17 chr21 12060081 12060494 -32847076 + MLT1C LTR MaLR 1 467 0 2118 100 4 0 chr21 12060745 12061044 -32846526 + AluSp SINE Alu 11 310 0 289 368 0 7 chr21 12061102 12061238 -32846332 + HERV16 LTR ERVL 527 661 -4335 815 176 0 0 chr21 12061820 12061945 -32845625 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr21 12061945 12061973 -32845597 + AT_rich Low_complexity Low_complexity 1 28 0 425 317 9 2 chr21 12062017 12062242 -32845328 - LTR16A1 LTR ERVL -22 435 162 2178 123 0 0 chr21 12062298 12062591 -32844979 + AluSg SINE Alu 1 293 -17 1726 184 59 6 chr21 12062705 12063042 -32844528 + MLT1A1 LTR MaLR 11 365 0 1885 117 8 8 chr21 12063421 12063686 -32843884 + AluSq SINE Alu 46 310 -3 30 0 0 0 chr21 12063975 12064005 -32843565 + AT_rich Low_complexity Low_complexity 1 30 0 439 257 9 0 chr21 12064277 12064390 -32843180 + LTR43 LTR ERV1 183 296 -306 2011 219 120 35 chr21 12064646 12065475 -32842095 - LTR1B LTR ERV1 0 922 1 233 202 101 67 chr21 12065710 12065799 -32841771 - MARNA DNA Mariner -480 106 15 878 227 99 6 chr21 12066644 12066816 -32840754 + MER5A DNA MER1_type 1 188 -1 467 205 0 0 chr21 12067609 12067692 -32839878 + MER5B DNA MER1_type 92 174 -4 519 122 0 0 chr21 12068290 12068364 -32839206 - MADE1 DNA Mariner -5 75 2 239 308 0 0 chr21 12068402 12068454 -32839116 + L2 LINE L2 3210 3261 -11 22 0 0 0 chr21 12068963 12068985 -32838585 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr21 12069365 12069409 -32838161 + AT_rich Low_complexity Low_complexity 1 44 0 1857 161 3 3 chr21 12070876 12071167 -32836403 + AluSx SINE Alu 1 291 -21 230 185 31 46 chr21 12071229 12071294 -32836276 + MLT1L LTR MaLR 104 167 -382 395 336 78 35 chr21 12071623 12072045 -32835525 + MLT1L LTR MaLR 174 613 -2 21 0 0 0 chr21 12072150 12072171 -32835399 + AT_rich Low_complexity Low_complexity 1 21 0 2144 113 3 10 chr21 12072172 12072473 -32835097 + AluSc SINE Alu 1 299 -10 313 309 36 24 chr21 12072607 12072775 -32834795 + HAL1 LINE L1 1136 1305 -1202 753 270 145 54 chr21 12072938 12073095 -32834475 - L1ME3A LINE L1 -9 6161 6020 1935 157 3 7 chr21 12073095 12073388 -32834182 - AluSx SINE Alu -20 292 1 753 270 145 54 chr21 12073388 12073693 -32833877 - L1ME3A LINE L1 -150 6020 5657 489 302 17 6 chr21 12074306 12074478 -32833092 - L1MC4 LINE L1 -145 7897 7724 664 219 55 7 chr21 12075135 12075281 -32832289 - L1MC4a LINE L1 -1052 6756 6604 199 290 58 77 chr21 12075832 12076039 -32831531 - L2 LINE L2 -1857 1457 1255 658 245 19 13 chr21 12076104 12076263 -32831307 - MER5B DNA MER1_type -18 160 1 518 115 0 13 chr21 12076564 12076642 -32830928 - MADE1 DNA Mariner -3 77 1 392 295 10 90 chr21 12077139 12077339 -32830231 - MIR3 SINE MIR -5 203 20 228 302 88 33 chr21 12078687 12078869 -32828701 + L3 LINE CR1 1216 1407 -170 266 252 26 78 chr21 12079277 12079392 -32828178 + MIR SINE MIR 112 220 -42 882 179 125 76 chr21 12085417 12085641 -32821929 + MER46A DNA MER2_type 2 236 0 1858 142 16 26 chr21 12085681 12085984 -32821586 + AluSx SINE Alu 1 300 -12 914 221 39 0 chr21 12087686 12087867 -32819703 + MER5A DNA MER1_type 2 189 0 255 310 40 0 chr21 12089797 12089897 -32817673 - MER94 DNA DNA 0 134 31 219 353 39 29 chr21 12091092 12091194 -32816376 - L2 LINE L2 -56 3216 3114 1673 204 6 3 chr21 12091538 12091857 -32815713 + L1MC2 LINE L1 6024 6343 -1 2113 286 58 43 chr21 12092030 12092133 -32815437 - L2 LINE L2 -784 2530 2430 634 264 74 0 chr21 12092133 12092296 -32815274 + MER96 DNA MER1_type 1 175 0 2113 286 58 43 chr21 12092296 12093001 -32814569 - L2 LINE L2 -884 2430 1710 21 71 0 0 chr21 12093705 12093747 -32813823 + AT_rich Low_complexity Low_complexity 1 42 0 2191 128 0 0 chr21 12095292 12095582 -32811988 - AluSg SINE Alu -20 290 1 1056 157 65 11 chr21 12095791 12095976 -32811594 + L1PA16 LINE L1 5963 6157 -9 733 165 8 0 chr21 12095852 12095979 -32811591 + L1PA16 LINE L1 6033 6160 -6 23 0 0 0 chr21 12096529 12096552 -32811018 + AT_rich Low_complexity Low_complexity 1 23 0 236 309 161 20 chr21 12097012 12097161 -32810409 - MIR3 SINE MIR -23 185 16 599 281 123 62 chr21 12097804 12098210 -32809360 + LTR33A LTR ERVL 1 431 -92 426 353 4 50 chr21 12098228 12098469 -32809101 - MLT1K LTR MaLR -82 506 277 941 320 70 23 chr21 12098662 12099146 -32808424 + LTR33 LTR ERVL 3 509 -12 199 415 15 7 chr21 12099163 12099298 -32808272 - MIR SINE MIR -109 153 18 21 0 0 0 chr21 12100457 12100478 -32807092 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr21 12100549 12100586 -32806984 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2314 96 0 0 chr21 12100586 12100879 -32806691 - L1PA7 LINE L1 -16 6138 5846 296 302 73 10 chr21 12101157 12101253 -32806317 + L2 LINE L2 3151 3252 -20 24 53 0 0 chr21 12101433 12101471 -32806099 + AT_rich Low_complexity Low_complexity 1 38 0 1230 223 82 62 chr21 12101746 12101784 -32805786 + MLT1C LTR MaLR 6 42 -425 1961 177 3 62 chr21 12101784 12102123 -32805447 - MLT1A1 LTR MaLR 0 365 50 2202 98 35 0 chr21 12102123 12102410 -32805160 + AluSx SINE Alu 1 297 -15 1961 177 3 62 chr21 12102410 12102454 -32805116 - MLT1A1 LTR MaLR -315 50 5 1230 223 82 62 chr21 12102454 12102868 -32804702 + MLT1C LTR MaLR 42 467 0 29 28 0 0 chr21 12103157 12103193 -32804377 + AT_rich Low_complexity Low_complexity 1 36 0 2637 146 82 11 chr21 12103976 12104343 -32803227 - L1MB2 LINE L1 -2 6169 5759 261 0 0 0 chr21 12104343 12104372 -32803198 + (TA)n Simple_repeat Simple_repeat 2 30 0 2637 146 82 11 chr21 12104372 12104482 -32803088 - L1MB2 LINE L1 -412 5759 5658 1787 189 0 3 chr21 12104650 12104952 -32802618 + AluJo SINE Alu 1 301 -11 1192 55 6 22 chr21 12104952 12104970 -32802600 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1192 55 6 22 chr21 12104970 12105152 -32802418 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1354 181 45 84 chr21 12105484 12105843 -32801727 - MLT1A1 LTR MaLR 0 365 21 2314 65 58 0 chr21 12106089 12106383 -32801187 - AluSp SINE Alu -2 311 1 2215 110 7 0 chr21 12106621 12106911 -32800659 - AluSq SINE Alu -21 292 1 424 263 28 68 chr21 12107042 12107258 -32800312 - MIR SINE MIR -53 209 1 263 257 40 50 chr21 12107517 12107618 -32799952 + MLT2E LTR ERVL 32 131 -497 831 216 51 31 chr21 12107984 12108239 -32799331 - LTR37B LTR ERV1 0 468 209 393 295 52 52 chr21 12108377 12108570 -32799000 - MIR SINE MIR -59 203 11 1651 93 0 0 chr21 12108803 12109018 -32798552 - L1PA6 LINE L1 0 6154 5940 620 216 33 39 chr21 12109455 12109564 -32798006 + MIR SINE MIR 14 123 -139 4640 116 32 32 chr21 12109564 12110255 -32797315 - LTR8 LTR ERV1 0 691 1 620 216 33 39 chr21 12110255 12110298 -32797272 + MIR SINE MIR 123 165 -97 1817 144 22 22 chr21 12112523 12112835 -32794735 + AluJb SINE Alu 1 312 0 211 333 25 0 chr21 12112843 12112924 -32794646 + MIR SINE MIR 160 242 -20 225 0 0 0 chr21 12112962 12112987 -32794583 + (T)n Simple_repeat Simple_repeat 1 25 0 315 221 35 62 chr21 12113127 12113240 -32794330 - MLT1J1 LTR MaLR -15 431 322 967 189 15 48 chr21 12113250 12113399 -32794171 - MLT1B LTR MaLR 0 390 248 4653 151 67 89 chr21 12113399 12114495 -32793075 - MER11C LTR ERVK 0 1071 1 967 189 15 48 chr21 12114495 12114551 -32793019 - MLT1B LTR MaLR -142 248 192 705 255 118 35 chr21 12114627 12114905 -32792665 - MLT1J1 LTR MaLR -133 313 9 233 330 58 75 chr21 12116870 12117058 -32790512 + MIR SINE MIR 25 209 -53 2070 190 11 6 chr21 12118051 12118414 -32789156 - MLT1A1 LTR MaLR 0 365 1 212 175 0 0 chr21 12120106 12120146 -32787424 + A-rich Low_complexity Low_complexity 2 41 0 184 307 45 23 chr21 12120927 12121015 -32786555 + MIR SINE MIR 58 147 -115 891 124 51 23 chr21 12121235 12121543 -32786027 + LTR7 LTR ERV1 1 450 0 1454 206 57 29 chr21 12122224 12122574 -32784996 + MER45B DNA AcHobo 445 804 -236 238 292 88 0 chr21 12122601 12122714 -32784856 + MIR SINE MIR 77 199 -63 358 232 0 0 chr21 12123861 12123930 -32783640 - L2 LINE L2 -3 3310 3242 333 352 31 0 chr21 12124034 12124162 -32783408 - MIR3 SINE MIR -42 166 35 275 71 24 0 chr21 12124560 12124602 -32782968 + (TC)n Simple_repeat Simple_repeat 2 44 0 592 300 55 23 chr21 12125608 12125828 -32781742 - MIR SINE MIR -8 254 28 343 293 76 5 chr21 12126136 12126334 -32781236 + MIR SINE MIR 13 228 -34 2522 51 0 0 chr21 12126871 12127163 -32780407 - AluY SINE Alu -19 292 1 1509 46 20 20 chr21 12127228 12127425 -32780145 - BC200 scRNA scRNA -3 197 1 496 283 127 58 chr21 12127605 12127810 -32779760 + MLT1K LTR MaLR 44 262 -326 552 95 0 0 chr21 12127833 12127917 -32779653 + (GA)n Simple_repeat Simple_repeat 1 84 0 459 0 0 0 chr21 12127917 12127968 -32779602 + (TG)n Simple_repeat Simple_repeat 1 51 0 3849 158 14 33 chr21 12129219 12129911 -32777659 - L1MA5 LINE L1 0 6300 5622 272 218 129 10 chr21 12130887 12130988 -32776582 + HsTC2c DNA Tc2 615 727 -2 25 0 0 0 chr21 12131248 12131273 -32776297 + AT_rich Low_complexity Low_complexity 1 25 0 355 284 57 51 chr21 12132269 12132445 -32775125 + MIR3 SINE MIR 16 192 -16 720 230 36 12 chr21 12132465 12132630 -32774940 - MER45A DNA AcHobo 0 178 10 312 330 40 29 chr21 12133555 12133750 -32773820 + MIR3 SINE MIR 12 210 -52 2280 108 0 3 chr21 12133771 12134076 -32773494 + AluSx SINE Alu 2 305 -7 1852 131 31 17 chr21 12134106 12134396 -32773174 - AluSq SINE Alu -19 294 1 629 247 14 0 chr21 12137185 12137331 -32770239 + MIR SINE MIR 113 260 -2 513 352 94 4 chr21 12137439 12137545 -32770025 + MIR SINE MIR 1 96 -166 7904 71 2 2 chr21 12137545 12138514 -32769056 + LTR5 LTR ERVK 1 969 0 513 352 94 4 chr21 12138514 12138640 -32768930 + MIR SINE MIR 96 254 -8 7595 33 1 0 chr21 12140128 12141013 -32766557 - L1PA3 LINE L1 0 6155 5270 2243 94 0 10 chr21 12143697 12143994 -32763576 - AluSg1 SINE Alu -15 294 1 324 127 0 0 chr21 12144115 12144170 -32763400 + (TG)n Simple_repeat Simple_repeat 1 55 0 1953 145 13 7 chr21 12145988 12146298 -32761272 - AluSx SINE Alu 0 312 1 26 0 0 0 chr21 12146525 12146551 -32761019 + AT_rich Low_complexity Low_complexity 1 26 0 582 279 53 0 chr21 12146551 12146738 -32760832 + MER67D LTR ERV1 225 400 -114 343 208 15 0 chr21 12147761 12147891 -32759679 + (CA)n Simple_repeat Simple_repeat 2 133 0 297 354 85 32 chr21 12149505 12149881 -32757689 + L2 LINE L2 2449 2844 -470 31 68 0 0 chr21 12150102 12150161 -32757409 + AT_rich Low_complexity Low_complexity 1 59 0 23 78 0 0 chr21 12150728 12150779 -32756791 + AT_rich Low_complexity Low_complexity 1 51 0 261 337 72 6 chr21 12152000 12152166 -32755404 + L1MCc LINE L1 19 195 -6228 1264 206 11 28 chr21 12152362 12152649 -32754921 - AluJo SINE Alu -30 282 1 1411 161 62 46 chr21 12153398 12153700 -32753870 - MSTB LTR MaLR -3 423 117 977 152 168 0 chr21 12153700 12153801 -32753769 - MER30 DNA MER1_type 0 230 147 474 18 0 0 chr21 12153801 12153856 -32753714 + (TG)n Simple_repeat Simple_repeat 2 56 0 977 152 168 0 chr21 12153856 12153951 -32753619 - MER30 DNA MER1_type -83 147 1 836 130 16 0 chr21 12153951 12154073 -32753497 - MSTB LTR MaLR -302 124 1 339 321 72 45 chr21 12154098 12154363 -32753207 - L1ME LINE L1 -547 5623 5352 1588 273 37 5 chr21 12154720 12155127 -32752443 + MER70A LTR ERVL 4 423 -49 23 33 0 0 chr21 12155843 12155873 -32751697 + AT_rich Low_complexity Low_complexity 1 30 0 3154 134 24 2 chr21 12155880 12156386 -32751184 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr21 12158080 12158118 -32749452 + AT_rich Low_complexity Low_complexity 1 38 0 1235 203 45 41 chr21 12158118 12158408 -32749162 - AluJb SINE Alu -11 291 1 198 208 167 0 chr21 12159173 12159245 -32748325 + L3 LINE CR1 64 147 -1430 255 309 0 24 chr21 12159253 12159337 -32748233 - MIR SINE MIR -20 242 161 258 164 0 0 chr21 12159350 12159405 -32748165 + (CA)n Simple_repeat Simple_repeat 1 55 0 522 143 276 0 chr21 12159453 12159551 -32748019 + FLAM_C SINE Alu 2 126 -17 760 283 63 60 chr21 12159795 12160232 -32747338 - MLT1K LTR MaLR -2 586 76 283 318 140 0 chr21 12160637 12160744 -32746826 + MIR3 SINE MIR 36 157 -51 1533 185 193 10 chr21 12160745 12161134 -32746436 - LTR46 LTR ERV1 0 460 1 430 318 124 19 chr21 12161176 12161443 -32746127 - L2 LINE L2 -24 3289 2995 501 224 94 24 chr21 12162322 12162492 -32745078 + LTR33 LTR ERVL 277 458 -63 479 326 133 0 chr21 12162828 12163046 -32744524 + MIR SINE MIR 15 261 -1 382 330 0 0 chr21 12163188 12163306 -32744264 + MIR SINE MIR 23 140 -122 1106 261 28 6 chr21 12163429 12163755 -32743815 - LTR16C LTR ERVL -29 462 130 251 291 103 22 chr21 12164087 12164256 -32743314 - MIR SINE MIR -55 207 26 571 180 0 4 chr21 12168419 12168587 -32738983 + HSAT5 Satellite Satellite 1 167 -3 351 171 34 57 chr21 12168807 12168895 -32738675 + HSAT5 Satellite Satellite 1 86 0 257 256 39 13 chr21 12168974 12169052 -32738518 + HSAT5 Satellite Satellite 5 84 -2 330 192 25 19 chr21 12169141 12169232 -32738338 + HSAT5 Satellite Satellite 1 91 -7 * 460 242 131 66 chr21 12169216 12169414 -32738156 - MSTA LTR MaLR -141 285 75 740 238 189 20 chr21 12169418 12169662 -32737908 + THE1-int LTR MaLR 907 1191 -389 282 214 18 0 chr21 12169650 12169706 -32737864 - THE1-int LTR MaLR -613 967 911 * 308 208 89 40 chr21 12169771 12169872 -32737698 - MSTA LTR MaLR -322 106 1 1122 208 96 20 chr21 12169872 12170165 -32737405 - MSTA-int LTR MaLR 0 1651 1337 348 216 102 11 chr21 12170190 12170278 -32737292 - MSTA LTR MaLR -257 171 76 429 208 21 10 chr21 12170341 12170437 -32737133 - MSTA LTR MaLR -331 97 1 6141 225 47 44 chr21 12170437 12172057 -32735513 - MSTA-int LTR MaLR 0 1651 28 398 234 41 48 chr21 12172054 12172199 -32735371 + THE1-int LTR MaLR 465 608 -972 * 867 238 82 12 chr21 12172235 12172491 -32735079 - MSTA LTR MaLR -60 368 95 942 189 189 20 chr21 12172506 12172750 -32734820 + THE1-int LTR MaLR 907 1191 -389 275 214 18 0 chr21 12172738 12172794 -32734776 - THE1-int LTR MaLR -613 967 911 * 504 179 21 0 chr21 12172888 12172983 -32734587 - MSTA LTR MaLR -331 97 1 1478 193 6 43 chr21 12172983 12173330 -32734240 - MSTA-int LTR MaLR 0 1651 1318 314 226 32 0 chr21 12173337 12173399 -32734171 - MSTA LTR MaLR -269 159 96 425 209 19 38 chr21 12173468 12173573 -32733997 - MSTA LTR MaLR -325 103 1 5806 230 52 47 chr21 12173573 12175184 -32732386 - MSTA-int LTR MaLR 0 1651 34 315 275 37 9 chr21 12175188 12175297 -32732273 + THE1-int LTR MaLR 466 577 -1003 971 195 106 39 chr21 12175339 12175621 -32731949 - MSTA LTR MaLR -52 376 76 750 191 191 56 chr21 12175625 12175876 -32731694 + THE1-int LTR MaLR 907 1191 -389 269 222 19 0 chr21 12175866 12175920 -32731650 - THE1-int LTR MaLR -615 965 911 * 3755 111 27 4 chr21 12175991 12176541 -32731029 + LTR6A LTR ERV1 1 563 -1 412 193 18 46 chr21 12176560 12176669 -32730901 - MSTA LTR MaLR -322 106 1 1244 211 40 46 chr21 12176669 12176996 -32730574 - MSTA-int LTR MaLR 0 1651 1327 229 318 103 9 chr21 12176998 12177105 -32730465 - MSTA LTR MaLR -252 176 60 382 235 10 0 chr21 12177154 12177252 -32730318 - MSTA LTR MaLR -329 99 1 546 198 9 0 chr21 12177252 12177368 -32730202 - MSTA-int LTR MaLR 0 1651 1535 * 4813 236 65 27 chr21 12177364 12178678 -32728892 - MSTA-int LTR MaLR -262 1389 26 471 230 166 7 chr21 12178674 12178813 -32728757 + MST-int LTR MaLR 507 667 -984 * 1048 231 52 8 chr21 12178841 12179109 -32728461 - MSTA LTR MaLR -52 376 97 669 239 202 29 chr21 12179130 12179373 -32728197 + THE1-int LTR MaLR 907 1191 -389 299 196 18 0 chr21 12179361 12179417 -32728153 - THE1-int LTR MaLR -613 967 911 * 293 197 33 0 chr21 12179533 12179594 -32727976 - MSTA LTR MaLR -363 65 3 1256 213 40 43 chr21 12179596 12179924 -32727646 - MSTA-int LTR MaLR 0 1651 1325 301 245 113 9 chr21 12179924 12180030 -32727540 - MSTA LTR MaLR -252 176 60 468 227 21 0 chr21 12180079 12180176 -32727394 - MSTA LTR MaLR -329 99 1 4433 247 72 20 chr21 12180176 12181340 -32726230 - MSTA-int LTR MaLR 0 1651 427 788 223 8 10 chr21 12181338 12181542 -32726028 - MSTA-int LTR MaLR -1269 102 28 * 581 182 156 10 chr21 12181538 12181689 -32725881 + MST-int LTR MaLR 466 661 -963 * 931 239 59 43 chr21 12181697 12182002 -32725568 - MSTA LTR MaLR -43 385 76 707 222 226 21 chr21 12182006 12182240 -32725330 + THE1-int LTR MaLR 907 1188 -392 289 193 18 0 chr21 12182231 12182288 -32725282 - THE1-int LTR MaLR -613 967 910 * 447 196 22 5 chr21 12182375 12182481 -32725089 - MSTA LTR MaLR -262 113 1 1262 208 16 38 chr21 12182481 12182799 -32724771 - MSTA-int LTR MaLR 0 1651 1341 285 213 41 107 chr21 12182805 12182927 -32724643 - MSTA LTR MaLR -257 171 58 460 219 10 0 chr21 12182952 12183048 -32724522 - MSTA LTR MaLR -331 97 1 545 189 27 0 chr21 12183048 12183159 -32724411 - MSTA-int LTR MaLR 0 1651 1538 454 202 10 0 chr21 12183282 12183381 -32724189 - MSTA LTR MaLR -328 100 1 6041 239 51 21 chr21 12183381 12184959 -32722611 - MSTA-int LTR MaLR 0 1651 28 311 303 32 26 chr21 12184953 12185108 -32722462 + THE1-int LTR MaLR 462 617 -963 * 980 222 66 28 chr21 12185126 12185414 -32722156 - MSTA LTR MaLR -54 374 76 609 267 192 21 chr21 12185418 12185658 -32721912 + THE1-int LTR MaLR 907 1187 -393 245 232 18 0 chr21 12185650 12185706 -32721864 - MSTA-int LTR MaLR -613 967 911 * 549 146 21 10 chr21 12185791 12185887 -32721683 - MSTA LTR MaLR -331 97 1 1472 202 3 40 chr21 12185887 12186233 -32721337 - MSTA-int LTR MaLR 0 1651 1319 356 214 117 10 chr21 12186233 12186336 -32721234 - MSTA LTR MaLR -257 171 58 421 232 10 0 chr21 12186381 12186480 -32721090 - MSTA LTR MaLR -328 100 1 389 158 26 0 chr21 12186480 12186556 -32721014 - MSTA-int LTR MaLR 0 1651 1574 324 177 0 32 chr21 12186558 12186620 -32720950 + MSTA LTR MaLR 317 376 -52 225 179 0 0 chr21 12186654 12186693 -32720877 - MSTA-int LTR MaLR -990 661 623 5622 229 50 36 chr21 12186693 12188228 -32719342 - MSTA-int LTR MaLR -68 1583 28 451 245 32 32 chr21 12188223 12188378 -32719192 + THE1-int LTR MaLR 463 617 -963 * 1040 243 56 4 chr21 12188395 12188662 -32718908 - MSTA LTR MaLR -52 376 96 683 232 195 25 chr21 12188686 12188927 -32718643 + THE1-int LTR MaLR 907 1188 -392 260 193 35 18 chr21 12188917 12188974 -32718596 - THE1-int LTR MaLR -612 968 911 * 443 208 10 0 chr21 12189070 12189166 -32718404 - MSTA LTR MaLR -331 97 1 1370 230 3 38 chr21 12189168 12189512 -32718058 - MSTA-int LTR MaLR -2 1649 1318 330 227 18 73 chr21 12189519 12189629 -32717941 - MSTA LTR MaLR -269 159 56 361 253 10 0 chr21 12189687 12189786 -32717784 - MSTA LTR MaLR -328 100 1 5899 226 51 47 chr21 12189786 12191404 -32716166 - MSTA-int LTR MaLR 0 1651 28 359 203 154 63 chr21 12191401 12191544 -32716026 + MST-int LTR MaLR 506 661 -990 * 934 234 78 8 chr21 12191586 12191842 -32715728 - MSTA LTR MaLR -60 368 95 836 188 208 21 chr21 12191857 12192097 -32715473 + THE1-int LTR MaLR 907 1191 -389 246 214 18 0 chr21 12192085 12192141 -32715429 - MST-int LTR MaLR -616 1035 979 * 401 202 32 0 chr21 12192235 12192329 -32715241 - MSTA LTR MaLR -331 97 1 1343 205 11 49 chr21 12192329 12192676 -32714894 - MSTA-int LTR MaLR 0 1651 1318 300 229 33 0 chr21 12192683 12192744 -32714826 - MSTA LTR MaLR -269 159 97 450 224 20 0 chr21 12192822 12192920 -32714650 - MSTA LTR MaLR -328 100 1 5938 226 54 41 chr21 12192920 12194518 -32713052 - MSTA-int LTR MaLR 0 1651 34 292 269 46 9 chr21 12194522 12194630 -32712940 + THE1-int LTR MaLR 466 577 -1003 931 203 76 54 chr21 12194672 12194948 -32712622 - MSTA LTR MaLR -52 376 95 671 234 182 22 chr21 12194961 12195192 -32712378 + MST-int LTR MaLR 976 1243 -408 239 250 18 0 chr21 12195190 12195246 -32712324 - THE1-int LTR MaLR -613 967 911 * 3788 106 27 4 chr21 12195317 12195867 -32711703 + LTR6A LTR ERV1 1 563 -1 423 207 34 9 chr21 12195884 12195992 -32711578 - MSTA LTR MaLR -262 113 1 1132 217 50 43 chr21 12195992 12196315 -32711255 - MSTA-int LTR MaLR 0 1651 1327 302 224 131 37 chr21 12196317 12196424 -32711146 - MSTA LTR MaLR -252 176 60 404 222 9 37 chr21 12196463 12196571 -32710999 - MSTA LTR MaLR -323 105 1 583 181 9 0 chr21 12196571 12196687 -32710883 - MSTA-int LTR MaLR 0 1651 1535 * 4752 234 67 30 chr21 12196683 12197992 -32709578 - MSTA-int LTR MaLR -262 1389 32 499 226 161 7 chr21 12197997 12198134 -32709436 + MST-int LTR MaLR 510 667 -984 1016 235 67 11 chr21 12198162 12198447 -32709123 - MSTA LTR MaLR -52 376 76 746 231 193 21 chr21 12198451 12198694 -32708876 + THE1-int LTR MaLR 907 1191 -389 271 214 18 0 chr21 12198682 12198738 -32708832 - THE1-int LTR MaLR -613 967 911 * 261 218 59 50 chr21 12198814 12198915 -32708655 - MSTA LTR MaLR -324 104 3 1261 213 40 43 chr21 12198917 12199245 -32708325 - MSTA-int LTR MaLR 0 1651 1325 297 245 113 9 chr21 12199245 12199351 -32708219 - MSTA LTR MaLR -252 176 60 468 227 21 0 chr21 12199400 12199497 -32708073 - MSTA LTR MaLR -329 99 1 5977 235 64 18 chr21 12199497 12201048 -32706522 - MSTA-int LTR MaLR 0 1651 28 515 208 156 10 chr21 12201044 12201195 -32706375 + MST-int LTR MaLR 466 661 -963 * 874 243 66 43 chr21 12201203 12201508 -32706062 - MSTA LTR MaLR -43 385 74 758 220 191 21 chr21 12201513 12201754 -32705816 + THE1-int LTR MaLR 907 1188 -392 265 172 17 35 chr21 12201745 12201803 -32705767 - THE1-int LTR MaLR -613 967 911 * 420 204 11 0 chr21 12201903 12201996 -32705574 - MSTA LTR MaLR -334 94 1 1064 223 22 47 chr21 12201996 12202315 -32705255 - MSTA-int LTR MaLR 0 1651 1341 302 219 49 85 chr21 12202321 12202403 -32705167 - MSTA LTR MaLR -257 171 93 467 208 10 0 chr21 12202475 12202571 -32704999 - MSTA LTR MaLR -331 97 1 615 159 9 0 chr21 12202571 12202684 -32704886 - MSTA-int LTR MaLR 0 1651 1538 349 236 0 39 chr21 12202696 12202823 -32704747 + C-rich Low_complexity Low_complexity 2 123 0 408 202 42 34 chr21 12202825 12202944 -32704626 - MSTA LTR MaLR -308 120 1 6191 229 52 22 chr21 12202944 12204521 -32703049 - MSTA-int LTR MaLR 0 1651 28 384 233 144 9 chr21 12204515 12204671 -32702899 + MST-int LTR MaLR 462 661 -963 * 1049 242 52 17 chr21 12204689 12204978 -32702592 - MSTA LTR MaLR -54 374 76 689 233 192 21 chr21 12204982 12205222 -32702348 + THE1-int LTR MaLR 907 1187 -393 230 250 18 0 chr21 12205214 12205270 -32702300 - THE1-int LTR MaLR -613 967 911 * 471 168 21 11 chr21 12205356 12205451 -32702119 - MSTA LTR MaLR -332 96 1 1337 226 3 41 chr21 12205451 12205792 -32701778 - MSTA-int LTR MaLR 0 1651 1324 337 234 149 0 chr21 12205792 12205899 -32701671 - MSTA LTR MaLR -248 180 58 371 263 10 0 chr21 12205944 12206043 -32701527 - MSTA LTR MaLR -328 100 1 405 145 26 0 chr21 12206043 12206119 -32701451 - MSTA-int LTR MaLR 0 1651 1574 279 163 0 0 chr21 12206131 12206174 -32701396 + MSTB LTR MaLR 323 365 -61 5689 221 52 37 chr21 12206254 12207786 -32699784 - MSTA-int LTR MaLR -68 1583 28 508 240 32 26 chr21 12207781 12207935 -32699635 + THE1-int LTR MaLR 463 617 -963 * 1068 242 55 10 chr21 12207952 12208241 -32699329 - MSTA LTR MaLR -52 376 75 671 228 195 25 chr21 12208243 12208484 -32699086 + THE1-int LTR MaLR 907 1188 -392 233 193 35 18 chr21 12208474 12208531 -32699039 - THE1-int LTR MaLR -612 968 911 * 464 208 10 0 chr21 12208627 12208723 -32698847 - MSTA LTR MaLR -331 97 1 1474 206 9 44 chr21 12208725 12209069 -32698501 - MSTA-int LTR MaLR -2 1649 1318 346 231 0 0 chr21 12209076 12209141 -32698429 - MSTA LTR MaLR -269 159 95 210 287 32 0 chr21 12209142 12209236 -32698334 + (CACCC)n Simple_repeat Simple_repeat 3 99 0 351 263 10 0 chr21 12209244 12209343 -32698227 - MSTA LTR MaLR -328 100 1 5895 223 52 45 chr21 12209344 12210955 -32696615 - MSTA-int LTR MaLR -1 1650 28 381 162 183 84 chr21 12210952 12211094 -32696476 + THE1-int LTR MaLR 465 661 -990 * 851 235 82 12 chr21 12211137 12211392 -32696178 - MSTA LTR MaLR -61 367 95 1000 176 189 20 chr21 12211407 12211651 -32695919 + THE1-int LTR MaLR 907 1191 -389 264 214 18 0 chr21 12211639 12211695 -32695875 - THE1-int LTR MaLR -613 967 911 * 486 189 21 0 chr21 12211789 12211884 -32695686 - MSTA LTR MaLR -331 97 1 1399 213 3 40 chr21 12211884 12212231 -32695339 - MSTA-int LTR MaLR 0 1651 1318 277 258 32 0 chr21 12212238 12212300 -32695270 - MSTA LTR MaLR -269 159 96 394 219 42 21 chr21 12212377 12212473 -32695097 - MSTA LTR MaLR -328 100 3 5900 232 53 33 chr21 12212475 12214061 -32693509 - MSTA-int LTR MaLR 0 1651 34 297 239 64 37 chr21 12214065 12214174 -32693396 + THE1-int LTR MaLR 466 577 -1003 914 206 76 54 chr21 12214216 12214492 -32693078 - MSTA LTR MaLR -52 376 95 729 211 194 22 chr21 12214504 12214736 -32692834 + THE1-int LTR MaLR 907 1178 -402 3791 104 27 4 chr21 12214859 12215409 -32692161 + LTR6A LTR ERV1 1 563 -1 443 200 21 0 chr21 12215440 12215535 -32692035 - MSTA LTR MaLR -331 97 1 1132 211 53 43 chr21 12215535 12215857 -32691713 - MSTA-int LTR MaLR 0 1651 1327 312 262 103 9 chr21 12215859 12215966 -32691604 - MSTA LTR MaLR -252 176 60 431 224 10 0 chr21 12216015 12216113 -32691457 - MSTA LTR MaLR -329 99 1 575 190 9 0 chr21 12216113 12216229 -32691341 - MSTA-int LTR MaLR 0 1651 1535 * 5143 221 59 27 chr21 12216225 12217545 -32690025 - MSTA-int LTR MaLR -262 1389 28 508 240 32 26 chr21 12217540 12217694 -32689876 + THE1-int LTR MaLR 463 617 -963 * 1019 242 57 4 chr21 12217714 12217978 -32689592 - MSTA LTR MaLR -55 373 96 666 228 195 25 chr21 12218002 12218243 -32689327 + THE1-int LTR MaLR 907 1188 -392 274 137 39 20 chr21 12218233 12218284 -32689286 - THE1-int LTR MaLR -612 968 917 * 446 215 20 4 chr21 12218375 12218482 -32689088 - MSTA LTR MaLR -251 113 1 1461 212 6 43 chr21 12218484 12218829 -32688741 - MSTA-int LTR MaLR -2 1649 1318 305 236 18 73 chr21 12218836 12218946 -32688624 - MSTA LTR MaLR -269 159 56 262 253 50 50 chr21 12219005 12219104 -32688466 - MSTA LTR MaLR -327 99 1 5457 237 60 24 chr21 12219104 12220668 -32686902 - MSTA-int LTR MaLR 0 1651 32 512 217 151 4 chr21 12220671 12220821 -32686749 + MST-int LTR MaLR 467 661 -963 1229 211 63 7 chr21 12220837 12221121 -32686449 - MSTA LTR MaLR -52 376 77 798 194 223 45 chr21 12221126 12221368 -32686202 + THE1-int LTR MaLR 907 1191 -389 301 179 18 0 chr21 12221356 12221412 -32686158 - THE1-int LTR MaLR -613 967 911 * 318 250 0 10 chr21 12221524 12221628 -32685942 - MSTA-int LTR MaLR -1521 130 28 * 456 225 162 0 chr21 12221625 12221767 -32685803 + MST-int LTR MaLR 506 670 -981 1284 245 26 47 chr21 12221792 12222176 -32685394 - MSTA LTR MaLR -52 376 1 1370 163 12 12 chr21 12222176 12222427 -32685143 - MSTA-int LTR MaLR 0 1651 1401 1334 185 0 0 chr21 12222424 12222662 -32684908 - MSTA-int LTR MaLR -1401 250 13 * 1316 246 95 3 chr21 12222691 12223028 -32684542 - MSTA LTR MaLR -60 368 1 2139 87 67 45 chr21 12225113 12225517 -32682053 + SN5 Other centromeric 1 413 -42 189 237 0 0 chr21 12225793 12225852 -32681718 + (TG)n Simple_repeat Simple_repeat 2 60 0 271 207 17 34 chr21 12226179 12226280 -32681290 + HSAT5 Satellite Satellite 1 99 -1 296 191 71 48 chr21 12226576 12226660 -32680910 + HSAT5 Satellite Satellite 1 86 0 1277 196 234 20 chr21 12227330 12227788 -32679782 + L1MC4 LINE L1 6819 7374 -668 250 305 0 12 chr21 12228646 12228728 -32678842 - L2 LINE L2 -227 3045 2965 21 0 0 0 chr21 12229352 12229373 -32678197 + AT_rich Low_complexity Low_complexity 1 21 0 2108 133 7 0 chr21 12229735 12230029 -32677541 + AluSc SINE Alu 1 296 -13 4474 172 43 19 chr21 12230189 12230852 -32676718 - L1PA16 LINE L1 0 6166 5467 207 0 0 0 chr21 12230852 12230875 -32676695 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4474 172 43 19 chr21 12230875 12231327 -32676243 - L1PA16 LINE L1 -699 5467 5027 2004 147 17 0 chr21 12231364 12231664 -32675906 - AluSx SINE Alu -7 305 1 1972 117 3 45 chr21 12231842 12232151 -32675419 - AluSg1 SINE Alu -10 299 4 2082 135 3 0 chr21 12232182 12232479 -32675091 + AluSg SINE Alu 1 298 -12 378 267 0 0 chr21 12233429 12233530 -32674040 + L1MA9 LINE L1 6163 6263 -49 1447 210 14 30 chr21 12235956 12236251 -32671319 + AluJo SINE Alu 6 295 -17 2941 215 32 11 chr21 12236364 12237480 -32670090 + L1MA5 LINE L1 4808 5946 -354 969 256 31 8 chr21 12237481 12237739 -32669831 + AluJo SINE Alu 1 264 -48 1294 178 65 0 chr21 12237806 12238082 -32669488 + L1MA5 LINE L1 6001 6294 -6 727 312 85 17 chr21 12238119 12238498 -32669072 + MLT1G1 LTR MaLR 79 561 -34 2412 206 41 44 chr21 12239843 12240907 -32666663 + L1MB8 LINE L1 4771 5836 -342 2137 150 75 5 chr21 12240916 12241327 -32666243 + MER61C LTR ERV1 11 434 0 1230 214 68 12 chr21 12241327 12241650 -32665920 + L1MB8 LINE L1 5833 6173 -5 1222 242 88 22 chr21 12241870 12242234 -32665336 + MER4E LTR ERV1 1 388 -391 3229 119 44 0 chr21 12242330 12242810 -32664760 + L1PA10 LINE L1 5655 6155 -13 1939 147 3 58 chr21 12243196 12243522 -32664048 - AluSq SINE Alu -5 308 1 22 35 0 0 chr21 12244039 12244068 -32663502 + AT_rich Low_complexity Low_complexity 1 29 0 372 171 0 14 chr21 12244073 12244143 -32663427 - MER34C LTR ERV1 -94 491 423 1615 139 86 4 chr21 12244403 12244707 -32662863 + AluSg SINE Alu 1 326 0 2137 120 0 3 chr21 12245956 12246264 -32661306 - AluSg SINE Alu 0 307 1 2266 129 3 0 chr21 12246613 12246924 -32660646 - AluSx SINE Alu 0 312 1 1371 211 46 4 chr21 12247353 12247512 -32660058 - AluJb SINE Alu -20 292 114 225 0 0 0 chr21 12247512 12247537 -32660033 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1371 211 46 4 chr21 12247537 12247657 -32659913 - AluJb SINE Alu -198 114 1 1912 217 81 26 chr21 12248759 12249252 -32658318 + L1MB8 LINE L1 5653 6172 -6 269 269 103 0 chr21 12250316 12250394 -32657176 + L2 LINE L2 2722 2807 -507 897 233 40 18 chr21 12251108 12251383 -32656187 - L1MB7 LINE L1 0 6184 5904 5594 115 62 42 chr21 12251918 12253284 -32654286 - SVA Other Other -518 1381 432 2749 124 58 46 chr21 12253328 12254665 -32652905 - SVA Other Other -518 868 343 23 0 0 0 chr21 12256733 12256756 -32650814 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 12257685 12257706 -32649864 + AT_rich Low_complexity Low_complexity 1 21 0 465 247 84 36 chr21 12257795 12258021 -32649549 - L1MB7 LINE L1 -478 5643 5404 2028 142 0 13 chr21 12258140 12258457 -32649113 + AluSq SINE Alu 1 313 0 34 42 0 0 chr21 12258645 12258693 -32648877 + AT_rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr21 12258769 12258807 -32648763 + AT_rich Low_complexity Low_complexity 1 38 0 634 47 23 0 chr21 12260467 12260553 -32647017 - L1PA5 LINE L1 -1 6153 6066 26 30 0 0 chr21 12262550 12262583 -32644987 + AT_rich Low_complexity Low_complexity 1 33 0 26 64 0 0 chr21 12262837 12262884 -32644686 + AT_rich Low_complexity Low_complexity 1 47 0 1480 238 30 0 chr21 12263273 12263571 -32643999 + AluJo SINE Alu 1 307 -5 211 200 0 0 chr21 12263792 12263832 -32643738 - L2 LINE L2 -12 3301 3262 1947 159 7 0 chr21 12264114 12264416 -32643154 - AluSx SINE Alu -8 304 1 1939 154 11 0 chr21 12264879 12265165 -32642405 - AluSp SINE Alu -24 289 1 22 56 0 0 chr21 12266785 12266821 -32640749 + AT_rich Low_complexity Low_complexity 1 36 0 1882 165 0 0 chr21 12266933 12267236 -32640334 + AluSx SINE Alu 6 308 -4 244 196 0 0 chr21 12268232 12268278 -32639292 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 181 208 0 chr21 12270465 12270537 -32637033 + MER5A DNA MER1_type 20 106 -83 2336 89 0 0 chr21 12271400 12271693 -32635877 - AluY SINE Alu -18 293 1 1261 250 0 24 chr21 12271889 12272185 -32635385 - AluJo SINE Alu -23 289 1 1569 213 0 7 chr21 12272219 12272501 -32635069 + AluJb SINE Alu 3 282 -30 6367 47 0 0 chr21 12272887 12273658 -32633912 + L1PA5 LINE L1 5376 6146 -8 21 89 0 0 chr21 12273892 12273948 -32633622 + AT_rich Low_complexity Low_complexity 1 56 0 1244 210 30 54 chr21 12274044 12274339 -32633231 + AluJb SINE Alu 13 300 -12 1885 123 6 85 chr21 12274513 12274831 -32632739 - AluSx SINE Alu -19 293 1 649 206 0 0 chr21 12275084 12275191 -32632379 - FLAM_A SINE Alu -35 107 1 22 35 0 0 chr21 12276490 12276519 -32631051 + AT_rich Low_complexity Low_complexity 1 29 0 214 358 70 35 chr21 12278194 12278423 -32629147 + MIR SINE MIR 20 256 -6 616 232 0 24 chr21 12278575 12278700 -32628870 + FLAM_A SINE Alu 6 127 -15 647 166 45 19 chr21 12279146 12279303 -32628267 - MER21A LTR ERV1 -24 907 747 812 127 45 0 chr21 12279304 12279438 -32628132 + Tigger7 DNA MER2_type 2352 2491 0 2360 153 2 40 chr21 12280454 12280899 -32626671 + L1MC1 LINE L1 5906 6333 0 1883 164 17 0 chr21 12280909 12281202 -32626368 + AluSq SINE Alu 1 298 -15 28 0 0 0 chr21 12281239 12281267 -32626303 + AT_rich Low_complexity Low_complexity 1 28 0 2157 125 6 6 chr21 12281267 12281578 -32625992 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr21 12281701 12281728 -32625842 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr21 12282059 12282096 -32625474 + AT_rich Low_complexity Low_complexity 1 37 0 2588 192 46 7 chr21 12282129 12282670 -32624900 + MER68 LTR ERV1 1 562 0 1299 161 0 109 chr21 12283036 12283340 -32624230 + AluJb SINE Alu 1 271 -41 863 187 0 0 chr21 12283421 12283560 -32624010 + FAM SINE Alu 22 160 -25 188 119 0 48 chr21 12283880 12283922 -32623648 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1896 193 35 14 chr21 12284175 12284600 -32622970 + Tigger2a DNA MER2_type 1 434 0 21 71 0 0 chr21 12284600 12284642 -32622928 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 12284869 12284891 -32622679 + AT_rich Low_complexity Low_complexity 1 22 0 546 217 0 0 chr21 12286155 12286261 -32621309 - U6 snRNA snRNA -1 106 1 21 0 0 0 chr21 12286377 12286398 -32621172 + AT_rich Low_complexity Low_complexity 1 21 0 593 178 127 0 chr21 12287209 12287327 -32620243 + FLAM_C SINE Alu 1 133 0 2135 129 0 0 chr21 12288261 12288548 -32619022 + AluSc SINE Alu 1 287 -22 196 270 200 26 chr21 12289241 12289356 -32618214 + L2 LINE L2 3138 3272 0 21 0 0 0 chr21 12290019 12290040 -32617530 + AT_rich Low_complexity Low_complexity 1 21 0 371 260 83 21 chr21 12290418 12290653 -32616917 - MER102a DNA MER1_type -1 329 81 342 0 0 0 chr21 12291543 12291581 -32615989 + (TG)n Simple_repeat Simple_repeat 1 38 0 280 223 330 11 chr21 12291587 12291681 -32615889 - FLAM_A SINE Alu -9 124 1 250 274 129 48 chr21 12291693 12291817 -32615753 + MER5A DNA MER1_type 56 189 0 527 248 187 46 chr21 12293485 12293705 -32613865 + MIR SINE MIR 4 251 -11 1656 186 3 7 chr21 12293709 12294004 -32613566 - AluJo SINE Alu -18 294 1 383 254 63 28 chr21 12294104 12294246 -32613324 + MER104 DNA Tc2 34 180 0 217 254 18 0 chr21 12294702 12294757 -32612813 + L2 LINE L2 3216 3271 -1 33 56 0 0 chr21 12294834 12294888 -32612682 + AT_rich Low_complexity Low_complexity 1 54 0 322 319 42 7 chr21 12295466 12295610 -32611960 - L1ME LINE L1 -445 5676 5528 256 192 48 32 chr21 12295812 12295937 -32611633 + (TA)n Simple_repeat Simple_repeat 1 127 0 2128 132 3 0 chr21 12295949 12296260 -32611310 + AluSx SINE Alu 1 312 0 24 32 0 0 chr21 12296306 12296337 -32611233 + AT_rich Low_complexity Low_complexity 1 31 0 809 243 99 55 chr21 12298100 12299353 -32608217 - HSREP522 Satellite telomeric 0 1308 1 733 199 4 57 chr21 12299739 12299987 -32607583 + HSREP522 Satellite telomeric 270 504 0 5007 211 58 9 chr21 12299987 12301287 -32606283 - L1 LINE L1 -1998 4148 2785 547 260 89 50 chr21 12301418 12301756 -32605814 + HSREP522 Satellite telomeric 2 352 -152 255 174 0 58 chr21 12302604 12302759 -32604811 + (CCCTG)n Simple_repeat Simple_repeat 1 146 0 190 167 8 56 chr21 12302915 12303041 -32604529 + (CCCTG)n Simple_repeat Simple_repeat 1 120 0 293 161 10 99 chr21 12303048 12303240 -32604330 + (GCCTG)n Simple_repeat Simple_repeat 5 179 0 342 153 0 118 chr21 12303259 12303462 -32604108 + (CCCTG)n Simple_repeat Simple_repeat 1 179 0 268 190 25 0 chr21 12303526 12303605 -32603965 + (CCCTAG)n Simple_repeat Simple_repeat 2 82 0 231 158 0 59 chr21 12303633 12303734 -32603836 + (CCCTG)n Simple_repeat Simple_repeat 1 95 0 328 168 0 102 chr21 12303846 12304013 -32603557 + (CCCTG)n Simple_repeat Simple_repeat 2 151 0 * 413 269 47 12 chr21 12303948 12304119 -32603451 + (CCCTAG)n Simple_repeat Simple_repeat 3 179 0 304 171 0 122 chr21 12304038 12304243 -32603327 + (CCCTG)n Simple_repeat Simple_repeat 1 180 0 * 331 159 5 101 chr21 12304291 12304480 -32603090 + (CCCTG)n Simple_repeat Simple_repeat 4 174 0 * 440 252 50 0 chr21 12304404 12304563 -32603007 + (CCCTAG)n Simple_repeat Simple_repeat 6 172 0 378 158 0 102 chr21 12304523 12304719 -32602851 + (CCCTG)n Simple_repeat Simple_repeat 1 176 0 * 311 119 0 89 chr21 12304751 12304919 -32602651 + (CCCTG)n Simple_repeat Simple_repeat 5 157 0 369 180 0 90 chr21 12304960 12305138 -32602432 + (CCCTG)n Simple_repeat Simple_repeat 4 165 0 227 121 7 94 chr21 12305193 12305342 -32602228 + (CCCTG)n Simple_repeat Simple_repeat 1 136 0 314 139 0 57 chr21 12305366 12305488 -32602082 + (CCCTG)n Simple_repeat Simple_repeat 2 116 0 962 144 47 56 chr21 12305519 12305734 -32601836 - L1MB7 LINE L1 -87 6097 5885 2189 121 3 3 chr21 12305818 12306115 -32601455 - AluSp SINE Alu -16 297 1 1232 141 0 5 chr21 12306148 12306333 -32601237 + AluSg/x SINE Alu 129 312 0 397 354 49 21 chr21 12306494 12306923 -32600647 - L1MC4a LINE L1 -1902 5906 5466 867 135 26 47 chr21 12306939 12307132 -32600438 + L1MA9 LINE L1 6124 6312 0 1562 245 75 9 chr21 12307367 12307832 -32599738 + L1ME1 LINE L1 5662 6157 -9 39778 68 9 4 chr21 12307851 12313264 -32594306 - L1P2 LINE L1 -711 5443 13 2428 133 65 99 chr21 12313542 12314159 -32593411 - L1MB3 LINE L1 -1 6182 5587 22 0 0 0 chr21 12314236 12314258 -32593312 + AT_rich Low_complexity Low_complexity 1 22 0 2277 122 0 0 chr21 12314402 12314706 -32592864 - AluSg SINE Alu -6 304 1 8008 226 55 23 chr21 12314843 12316773 -32590797 - L1MC4a LINE L1 -847 5299 3267 1953 154 10 3 chr21 12316773 12317066 -32590504 - AluSx SINE Alu -17 295 1 8008 226 55 23 chr21 12317066 12317696 -32589874 - L1MC4a LINE L1 -2879 3267 2658 2018 131 7 13 chr21 12318026 12318331 -32589239 + AluSx SINE Alu 6 308 -4 23 78 0 0 chr21 12320144 12320195 -32587375 + AT_rich Low_complexity Low_complexity 1 51 0 2156 107 24 3 chr21 12320389 12320680 -32586890 + AluSq SINE Alu 1 297 -16 414 351 44 37 chr21 12320722 12321018 -32586552 + L1ME3A LINE L1 5528 5825 -296 2052 133 3 23 chr21 12321020 12321329 -32586241 + AluSg1 SINE Alu 1 303 -6 2342 74 0 0 chr21 12321342 12321656 -32585914 + AluY SINE Alu 2 315 0 1372 154 67 29 chr21 12323571 12323883 -32583687 - MER33 DNA MER1_type 0 324 1 1159 204 14 14 chr21 12323892 12324112 -32583458 - MER58A DNA MER1_type -1 223 4 537 252 34 19 chr21 12324313 12324519 -32583051 + L1M4 LINE L1 2869 3077 -3069 1799 115 0 0 chr21 12324526 12324760 -32582810 + AluSq SINE Alu 1 234 -79 251 316 73 15 chr21 12325481 12325617 -32581953 + MIR SINE MIR 22 165 -97 267 114 0 0 chr21 12328396 12328440 -32579130 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 2353 101 3 0 chr21 12334071 12334367 -32573203 + AluSg SINE Alu 1 297 -13 2004 132 3 10 chr21 12334378 12334682 -32572888 + AluSx SINE Alu 1 302 -10 1097 82 0 0 chr21 12335288 12335422 -32572148 - AluSq/x SINE Alu -178 134 1 2133 135 6 25 chr21 12335424 12335742 -32571828 - AluSx SINE Alu 0 312 1 249 290 16 0 chr21 12335948 12336010 -32571560 + L2 LINE L2 3251 3313 0 1579 212 10 7 chr21 12336289 12336596 -32570974 - AluJo SINE Alu -4 308 1 22 0 0 0 chr21 12336596 12336618 -32570952 + AT_rich Low_complexity Low_complexity 1 22 0 2077 104 76 0 chr21 12338489 12338777 -32568793 - AluSg SINE Alu 0 310 1 29 70 0 0 chr21 12339190 12339247 -32568323 + AT_rich Low_complexity Low_complexity 1 57 0 381 313 130 10 chr21 12341567 12341775 -32565795 + L1ME3A LINE L1 5936 6168 -2 191 242 136 30 chr21 12342010 12342076 -32565494 + L2 LINE L2 3191 3263 -9 544 283 31 25 chr21 12342252 12342411 -32565159 - MER5B DNA MER1_type -18 160 1 941 277 131 12 chr21 12343093 12343512 -32564058 + MLT1H LTR MaLR 7 475 -74 512 239 135 5 chr21 12344169 12344318 -32563252 + MER33 DNA MER1_type 60 249 -2336 1954 131 58 0 chr21 12344318 12344609 -32562961 - AluSg SINE Alu 0 310 3 512 239 135 5 chr21 12344609 12344681 -32562889 + MER33 DNA MER1_type 249 310 -14 1406 253 25 13 chr21 12345602 12345998 -32561572 - MER93a LTR ERV1 0 402 2 639 257 125 53 chr21 12347106 12347538 -32560032 - MER92B LTR ERV1 -120 516 54 932 233 82 9 chr21 12347593 12347910 -32559660 + MER21B LTR ERV1 417 756 -107 1415 217 80 32 chr21 12348657 12348825 -32558745 + MER67C LTR ERV1 1 160 -550 402 21 0 0 chr21 12348825 12348872 -32558698 + (TG)n Simple_repeat Simple_repeat 2 48 0 1415 217 80 32 chr21 12348872 12349253 -32558317 + MER67C LTR ERV1 160 657 -53 2520 54 0 19 chr21 12349253 12349569 -32558001 - AluY SINE Alu -1 310 1 1415 217 80 32 chr21 12349569 12349621 -32557949 + MER67C LTR ERV1 657 705 -5 2155 107 0 3 chr21 12351589 12351888 -32555682 + AluSq SINE Alu 1 298 -15 254 250 15 98 chr21 12352119 12352251 -32555319 + MIR SINE MIR 133 253 -9 349 255 170 7 chr21 12352694 12352835 -32554735 + MER5A DNA MER1_type 19 182 -7 669 344 100 34 chr21 12354426 12354978 -32552592 - L3 LINE CR1 -3 1574 987 2050 121 59 9 chr21 12355148 12355486 -32552084 - THE1A LTR MaLR 0 355 1 239 289 74 16 chr21 12356220 12356341 -32551229 - MER117 DNA MER1_type -53 144 17 603 274 6 24 chr21 12357323 12357491 -32550079 - LTR33 LTR ERVL -356 165 1 4423 92 3 2 chr21 12358521 12359127 -32548443 - L1PA14 LINE L1 -3 6158 5552 1055 351 11 15 chr21 12359578 12360039 -32547531 + L1MEc LINE L1 139 597 -5799 4403 254 67 37 chr21 12360056 12361223 -32546347 + L1MEc LINE L1 663 1793 -4422 2317 135 113 2 chr21 12361223 12361667 -32545903 + LTR54B LTR ERV1 4 496 -2 4403 254 67 37 chr21 12361667 12362056 -32545514 + L1MEc LINE L1 1793 2169 -4046 1999 103 17 17 chr21 12362056 12362347 -32545223 + AluSq SINE Alu 1 291 -22 4403 254 67 37 chr21 12362347 12363950 -32543620 + L1MEc LINE L1 2169 3916 -2299 1196 253 81 16 chr21 12363941 12364637 -32542933 + L1MCa LINE L1 1 707 -5338 * 1023 125 7 0 chr21 12364640 12364792 -32542778 + AluSp SINE Alu 138 290 -23 362 97 48 0 chr21 12364792 12364854 -32542716 + (GAGTG)n Simple_repeat Simple_repeat 3 67 0 1433 212 48 74 chr21 12364857 12365209 -32542361 + L1MCa LINE L1 701 1055 -5093 260 119 24 0 chr21 12365209 12365251 -32542319 - U2 snRNA snRNA -145 43 1 1433 212 48 74 chr21 12365251 12365483 -32542087 + L1MCa LINE L1 1055 1291 -4857 1428 182 42 20 chr21 12365489 12366018 -32541552 + L1MCa LINE L1 1507 2146 -4418 2098 222 45 32 chr21 12366060 12366596 -32540974 - LTR55 LTR ERV -5 543 1 244 182 55 0 chr21 12366635 12366690 -32540880 - L1MCa LINE L1 -4282 2144 2087 * 1514 245 30 9 chr21 12366687 12367375 -32540195 + L1MCa LINE L1 2148 2857 -3569 2364 266 45 22 chr21 12367377 12368177 -32539393 + L1MCa LINE L1 3337 4154 -2272 719 215 100 67 chr21 12368255 12368585 -32538985 + L1MCa LINE L1 4984 5324 -1102 1377 207 14 11 chr21 12368588 12368868 -32538702 + AluJo SINE Alu 6 286 -26 981 210 37 29 chr21 12368883 12369155 -32538415 + L1MCa LINE L1 5312 5585 -841 605 232 81 32 chr21 12369197 12369443 -32538127 + L1ME1 LINE L1 4581 4838 -1308 * 2277 227 82 24 chr21 12369442 12370346 -32537224 + L1ME1 LINE L1 5176 6295 -39 2273 108 22 41 chr21 12370468 12370883 -32536687 - L1PA13 LINE L1 -3 6160 5754 1066 107 0 7 chr21 12370891 12371041 -32536529 - AluSq/x SINE Alu -164 149 1 486 108 0 0 chr21 12371042 12371116 -32536454 - L1PA13 LINE L1 -1815 4331 4258 941 116 0 0 chr21 12371116 12371254 -32536316 + AluSg/x SINE Alu 174 311 -1 5266 154 18 5 chr21 12371256 12372149 -32535421 - L1PA13 LINE L1 -1887 4259 3355 1293 88 0 88 chr21 12372155 12372370 -32535200 - AluSx SINE Alu -116 196 1 366 207 0 67 chr21 12372417 12372596 -32534974 + (CAGGG)n Simple_repeat Simple_repeat 1 167 0 219 128 0 90 chr21 12372603 12372681 -32534889 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 882 113 0 8 chr21 12372736 12372869 -32534701 - AluSq/x SINE Alu -175 137 6 444 225 22 84 chr21 12372873 12373051 -32534519 + MIR SINE MIR 96 262 0 398 238 47 23 chr21 12373172 12373344 -32534226 + (CCCTAG)n Simple_repeat Simple_repeat 1 176 0 307 283 64 3 chr21 12373429 12373737 -32533833 + (CTAGGG)n Simple_repeat Simple_repeat 1 326 0 435 163 0 87 chr21 12373786 12373982 -32533588 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 307 277 44 20 chr21 12374000 12374428 -32533142 + (CTAGGG)n Simple_repeat Simple_repeat 1 438 0 302 291 29 29 chr21 12374463 12374635 -32532935 + (CTAGGG)n Simple_repeat Simple_repeat 1 172 0 254 139 0 58 chr21 12374641 12374727 -32532843 + (CAGGG)n Simple_repeat Simple_repeat 1 81 0 380 277 50 0 chr21 12374941 12375100 -32532470 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 385 182 5 88 chr21 12375010 12375237 -32532333 + (CAGGG)n Simple_repeat Simple_repeat 1 208 0 434 277 52 0 chr21 12375294 12375589 -32531981 + (CTAGGG)n Simple_repeat Simple_repeat 1 310 0 249 206 5 87 chr21 12375617 12375801 -32531769 + (CAGGG)n Simple_repeat Simple_repeat 2 170 0 189 178 0 59 chr21 12375814 12375915 -32531655 + (CAGGG)n Simple_repeat Simple_repeat 1 95 0 247 192 27 0 chr21 12375943 12376016 -32531554 + (CTAGGG)n Simple_repeat Simple_repeat 2 76 0 316 178 0 96 chr21 12376065 12376262 -32531308 + (CAGGG)n Simple_repeat Simple_repeat 3 180 0 182 57 0 94 chr21 12376377 12376430 -32531140 + (CAGGC)n Simple_repeat Simple_repeat 5 52 0 211 159 8 56 chr21 12376511 12376637 -32530933 + (CAGGG)n Simple_repeat Simple_repeat 1 120 0 227 169 13 97 chr21 12376646 12376800 -32530770 + (CAGGC)n Simple_repeat Simple_repeat 3 143 0 221 182 0 53 chr21 12376839 12376971 -32530599 + (CAGGG)n Simple_repeat Simple_repeat 2 126 0 666 285 69 51 chr21 12377772 12378161 -32529409 - HSREP522 Satellite telomeric -152 396 1 5316 209 58 11 chr21 12378292 12379595 -32527975 + L1 LINE L1 2785 4148 -1998 894 180 16 57 chr21 12379595 12379840 -32527730 - HSREP522 Satellite telomeric 0 504 270 1038 249 81 70 chr21 12380227 12381443 -32526127 + HSREP522 Satellite telomeric 1 1229 -120 22 35 0 0 chr21 12383229 12383258 -32524312 + AT_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr21 12383296 12383341 -32524229 + (TA)n Simple_repeat Simple_repeat 1 45 0 2067 125 3 0 chr21 12383347 12383658 -32523912 - AluSx SINE Alu 0 312 1 243 205 54 18 chr21 12383683 12383795 -32523775 + (TA)n Simple_repeat Simple_repeat 2 117 0 240 313 42 7 chr21 12383997 12384141 -32523429 + L1ME LINE L1 5528 5676 -445 27 0 0 0 chr21 12384745 12384772 -32522798 + AT_rich Low_complexity Low_complexity 1 27 0 216 254 18 0 chr21 12384849 12384904 -32522666 - L2 LINE L2 -1 3271 3216 21 0 0 0 chr21 12385238 12385259 -32522311 + AT_rich Low_complexity Low_complexity 1 21 0 384 239 78 42 chr21 12385364 12385506 -32522064 - MER104 DNA Tc2 0 180 34 1657 172 10 0 chr21 12385603 12385893 -32521677 + AluJo SINE Alu 1 293 -19 535 248 187 46 chr21 12385897 12386117 -32521453 - MIR SINE MIR -11 251 4 204 40 0 0 chr21 12387339 12387364 -32520206 + (TAA)n Simple_repeat Simple_repeat 3 27 0 200 242 11 0 chr21 12387553 12387648 -32519922 + CT-rich Low_complexity Low_complexity 2 97 0 247 300 0 0 chr21 12387712 12387792 -32519778 + (TG)n Simple_repeat Simple_repeat 1 80 0 516 186 34 8 chr21 12388536 12388654 -32518916 + 5S rRNA rRNA 1 121 0 1330 155 53 9 chr21 12389191 12392145 -32515425 - GSATX Satellite centromeric -20 3082 1 205 245 0 21 chr21 12394585 12394679 -32512891 + GA-rich Low_complexity Low_complexity 3 94 0 397 308 155 34 chr21 12394696 12394989 -32512581 + L1M4c LINE L1 910 1255 -5129 1227 209 7 47 chr21 12394989 12395285 -32512285 + AluJb SINE Alu 5 288 -24 397 308 155 34 chr21 12395285 12395345 -32512225 + L1M4c LINE L1 1255 1306 -5078 1812 106 75 17 chr21 12395386 12395679 -32511891 + AluSg SINE Alu 1 310 0 305 255 131 46 chr21 12395704 12395857 -32511713 + L1M4c LINE L1 3317 3482 -2900 1709 143 34 0 chr21 12396842 12397136 -32510434 + AluSx SINE Alu 1 304 -8 1469 160 4 0 chr21 12397137 12397368 -32510202 + PABL_A LTR ERV1 429 660 0 261 226 0 0 chr21 12397373 12397426 -32510144 + AluJ/monomer SINE Alu 248 300 -2 840 132 0 101 chr21 12397434 12397623 -32509947 + AluJo SINE Alu 120 289 -23 1147 243 74 13 chr21 12397756 12398065 -32509505 + ERVL LTR ERVL 3261 3588 -2176 263 175 18 12 chr21 12398075 12398132 -32509438 + AluSx SINE Alu 2 41 -260 4613 67 3 2 chr21 12398132 12398711 -32508859 - LTR14C LTR ERVK 0 587 8 1566 167 4 0 chr21 12398711 12398974 -32508596 + AluSx SINE Alu 29 292 -20 473 136 0 0 chr21 12399019 12399085 -32508485 + AluJ/FLAM SINE Alu 1 66 -246 1477 151 125 11 chr21 12399171 12399188 -32508382 - AluSp SINE Alu 0 303 289 288 0 0 0 chr21 12399188 12399220 -32508350 + (TAG)n Simple_repeat Simple_repeat 1 32 0 1477 151 125 11 chr21 12399220 12399474 -32508096 - AluSp SINE Alu -14 289 1 1863 107 37 4 chr21 12399476 12399771 -32507799 - AluSg SINE Alu 0 305 2 767 171 7 7 chr21 12400524 12400664 -32506906 + AluJb SINE Alu 2 141 -171 31 44 0 0 chr21 12400681 12400726 -32506844 + AT_rich Low_complexity Low_complexity 1 45 0 1226 161 141 24 chr21 12400804 12401059 -32506511 - AluJb SINE Alu -17 285 1 323 276 31 16 chr21 12401454 12401581 -32505989 + LTR54B LTR ERV1 18 146 -352 2167 119 3 0 chr21 12402930 12403233 -32504337 + AluSq SINE Alu 3 306 -7 1924 112 15 8 chr21 12403252 12403519 -32504051 - AluSx SINE Alu -43 269 1 2151 123 3 0 chr21 12403641 12403942 -32503628 - AluSq SINE Alu -11 302 1 1946 154 7 0 chr21 12404804 12405097 -32502473 - AluSx SINE Alu -17 295 1 2048 113 7 0 chr21 12405448 12405730 -32501840 + AluSx SINE Alu 3 286 -26 621 100 53 0 chr21 12405748 12405918 -32501652 + (TA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr21 12405918 12405949 -32501621 + AT_rich Low_complexity Low_complexity 1 31 0 199 116 27 75 chr21 12405949 12406096 -32501474 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 30 27 0 0 chr21 12406096 12406133 -32501437 + AT_rich Low_complexity Low_complexity 1 37 0 201 74 0 0 chr21 12406422 12406449 -32501121 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3573 170 32 15 chr21 12406456 12406729 -32500841 - L1 LINE L1 -3243 3605 3338 2104 139 7 0 chr21 12406729 12407030 -32500540 - AluSx SINE Alu -9 303 1 3573 170 32 15 chr21 12407030 12407806 -32499764 - L1 LINE L1 -3510 3338 2536 24 53 0 0 chr21 12408637 12408675 -32498895 + AT_rich Low_complexity Low_complexity 1 38 0 196 254 17 0 chr21 12408866 12408925 -32498645 + L2 LINE L2 3213 3272 0 26 50 0 0 chr21 12409097 12409137 -32498433 + AT_rich Low_complexity Low_complexity 1 40 0 1098 112 117 29 chr21 12409734 12409939 -32497631 - LTR12 LTR ERV1 0 714 492 326 266 9 0 chr21 12409941 12410050 -32497520 - LTR30 LTR ERV1 -69 653 544 6093 100 20 25 chr21 12410050 12411200 -32496370 - pTR5 LTR ERV1 -413 2025 743 258 237 21 82 chr21 12411220 12411317 -32496253 + MIR3 SINE MIR 110 200 -8 1872 137 3 18 chr21 12411435 12411768 -32495802 + AluSx SINE Alu 1 329 0 1069 182 0 0 chr21 12411901 12412077 -32495493 - AluJ SINE Alu -5 307 132 1696 168 23 16 chr21 12412097 12412407 -32495163 + AluJo SINE Alu 1 312 0 189 0 0 0 chr21 12412576 12412597 -32494973 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1152 131 0 6 chr21 12412597 12412772 -32494798 + FRAM SINE Alu 1 174 -2 195 114 0 0 chr21 12412962 12412997 -32494573 + (T)n Simple_repeat Simple_repeat 1 35 0 188 0 74 0 chr21 12413708 12413735 -32493835 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 254 264 174 39 chr21 12414300 12414455 -32493115 - MER5A DNA MER1_type 0 189 14 211 322 217 0 chr21 12414566 12414746 -32492824 - L3 LINE CR1 -167 1410 1192 844 136 8 15 chr21 12414746 12414878 -32492692 - AluJ SINE Alu -171 141 11 2223 136 0 0 chr21 12414937 12415246 -32492324 - AluSq SINE Alu -2 311 3 258 245 0 0 chr21 12415486 12415535 -32492035 + MIR SINE MIR 3 51 -211 956 134 29 10 chr21 12415571 12416067 -32491503 + (CACCAT)n Simple_repeat Simple_repeat 1 505 0 461 305 104 0 chr21 12416073 12416227 -32491343 - MIR SINE MIR -49 213 44 277 290 86 54 chr21 12416255 12416441 -32491129 - L3 LINE CR1 -731 846 655 608 253 138 18 chr21 12417757 12417804 -32489766 + MIR SINE MIR 11 51 -211 2004 162 0 0 chr21 12417804 12418101 -32489469 + AluJo SINE Alu 2 298 -14 608 253 138 18 chr21 12418101 12418278 -32489292 + MIR SINE MIR 51 262 0 254 183 37 85 chr21 12418300 12418382 -32489188 - MIR SINE MIR -8 254 177 2120 134 0 0 chr21 12418414 12418704 -32488866 - AluSx SINE Alu -17 295 6 1965 162 0 10 chr21 12418826 12419134 -32488436 - AluJb SINE Alu -7 305 1 819 294 29 8 chr21 12419192 12419430 -32488140 - MIR SINE MIR -2 260 18 1962 112 60 0 chr21 12420053 12420338 -32487232 + AluSx SINE Alu 1 302 -10 1467 172 8 77 chr21 12420707 12421078 -32486492 - MER4A LTR ERV1 0 664 261 630 122 10 10 chr21 12421078 12421176 -32486394 - MER4A LTR ERV1 -566 98 1 1862 143 4 0 chr21 12421248 12421528 -32486042 + AluSq SINE Alu 1 281 -32 195 100 0 0 chr21 12421528 12421558 -32486012 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3689 223 37 34 chr21 12421559 12422226 -32485344 - L1M1 LINE L1 -5277 2288 1616 3998 117 25 9 chr21 12422226 12422781 -32484789 + LTR6A LTR ERV1 1 564 0 3689 223 37 34 chr21 12422781 12422946 -32484624 - L1M1 LINE L1 -5949 1616 1453 1793 164 0 16 chr21 12423085 12423389 -32484181 - AluSx SINE Alu -13 299 1 2194 111 0 43 chr21 12423540 12423864 -32483706 + AluSg SINE Alu 1 310 0 405 0 0 0 chr21 12423870 12423915 -32483655 + (TA)n Simple_repeat Simple_repeat 1 45 0 242 165 71 12 chr21 12423940 12424025 -32483545 + (TA)n Simple_repeat Simple_repeat 1 90 0 279 0 0 0 chr21 12424409 12424440 -32483130 + (TG)n Simple_repeat Simple_repeat 2 32 0 1914 182 2 69 chr21 12424779 12425055 -32482515 + MLT1B LTR MaLR 11 253 -137 1967 129 92 29 chr21 12425055 12425404 -32482166 - THE1C LTR MaLR -4 371 1 1914 182 2 69 chr21 12425404 12425534 -32482036 + MLT1B LTR MaLR 253 390 0 556 288 155 9 chr21 12425764 12425983 -32481587 + MIR SINE MIR 8 258 -4 291 354 0 0 chr21 12426058 12426140 -32481430 - MIR SINE MIR -134 128 47 27 49 0 0 chr21 12427780 12427821 -32479749 + AT_rich Low_complexity Low_complexity 1 41 0 2643 163 37 16 chr21 12428020 12428506 -32479064 - L1MA8 LINE L1 -1 6290 5795 198 95 14 68 chr21 12428544 12428618 -32478952 + (TA)n Simple_repeat Simple_repeat 1 70 0 5753 158 9 23 chr21 12428619 12429511 -32478059 - L1MA8 LINE L1 -502 5789 4925 1042 209 5 27 chr21 12429511 12429731 -32477839 - L1PB4 LINE L1 0 6156 5942 5753 158 9 23 chr21 12429731 12430306 -32477264 - L1MA8 LINE L1 -1366 4925 4343 21 57 0 0 chr21 12430443 12430478 -32477092 + AT_rich Low_complexity Low_complexity 1 35 0 267 180 0 0 chr21 12430478 12430528 -32477042 - L1MA8 LINE L1 -1812 4334 4285 1896 267 88 27 chr21 12430578 12431361 -32476209 + L1ME1 LINE L1 516 1346 -5050 1728 113 57 60 chr21 12431361 12431571 -32475999 - THE1C LTR MaLR 0 375 165 2064 115 28 3 chr21 12431571 12431859 -32475711 + AluSc SINE Alu 1 295 -14 1728 113 57 60 chr21 12431859 12431983 -32475587 - THE1C LTR MaLR -210 165 42 431 293 56 37 chr21 12431983 12432253 -32475317 + HERV15 LTR ERV1 1207 1481 -7254 249 91 0 0 chr21 12432384 12432417 -32475153 - THE1C LTR MaLR -342 33 1 311 322 30 21 chr21 12432418 12432654 -32474916 + L1ME1 LINE L1 1343 1580 -4816 550 238 69 78 chr21 12432775 12433185 -32474385 + LTR15 LTR ERV1 112 479 -14 24668 269 36 41 chr21 12433198 12441974 -32465596 + HERV15 LTR ERV1 1 8731 -4 348 243 106 78 chr21 12442104 12442462 -32465108 + LTR15 LTR ERV1 112 479 -14 1459 83 29 19 chr21 12442466 12442671 -32464899 + AluSp SINE Alu 89 295 -18 1131 213 57 59 chr21 12442671 12443205 -32464365 + L1ME1 LINE L1 1588 2122 -4274 237 108 0 0 chr21 12443205 12443242 -32464328 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1782 121 11 11 chr21 12443247 12443520 -32464050 - AluSc SINE Alu -36 273 1 1131 213 57 59 chr21 12443520 12443607 -32463963 + L1ME1 LINE L1 2126 2302 -4094 * 2159 245 68 34 chr21 12443601 12444124 -32463446 + L1ME1 LINE L1 5461 6018 -217 1915 199 21 0 chr21 12444124 12444460 -32463110 - MER2 DNA MER2_type 0 344 2 2159 245 68 34 chr21 12444460 12444666 -32462904 + L1ME1 LINE L1 6018 6215 -20 352 243 153 40 chr21 12445464 12445666 -32461904 + L1ME LINE L1 5592 5816 -305 188 344 146 0 chr21 12446088 12446184 -32461386 + MIR SINE MIR 79 188 -74 23 33 0 0 chr21 12447237 12447267 -32460303 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 12447464 12447488 -32460082 + AT_rich Low_complexity Low_complexity 1 24 0 937 170 0 0 chr21 12447857 12448004 -32459566 + AluSg/x SINE Alu 135 281 -31 9053 213 39 30 chr21 12448436 12448604 -32458966 + L1P5 LINE L1 1067 1232 -5626 2111 101 0 0 chr21 12448604 12448881 -32458689 - AluY SINE Alu 0 311 35 9053 213 39 30 chr21 12448881 12449686 -32457884 + L1P5 LINE L1 1232 2028 -4830 204 97 0 0 chr21 12449686 12449717 -32457853 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9053 213 39 30 chr21 12449717 12451641 -32455929 + L1P5 LINE L1 2028 3933 -2925 1468 192 7 18 chr21 12451641 12451917 -32455653 + AluJo SINE Alu 33 305 -7 9053 213 39 30 chr21 12451917 12452903 -32454667 + L1P5 LINE L1 3933 6145 -713 14674 178 58 20 chr21 12452906 12455754 -32451816 + L1M1 LINE L1 15 2968 -4597 534 186 0 24 chr21 12455755 12455879 -32451691 + L1PB4 LINE L1 6034 6154 -2 25 0 0 0 chr21 12456187 12456212 -32451358 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 12456264 12456285 -32451285 + AT_rich Low_complexity Low_complexity 1 21 0 336 344 38 0 chr21 12456331 12456491 -32451079 - L1ME LINE L1 -303 5818 5653 904 286 26 0 chr21 12456500 12456734 -32450836 - MIR SINE MIR -5 257 18 1516 283 49 32 chr21 12457131 12458009 -32449561 - L2 LINE L2 0 3313 2424 36 40 0 0 chr21 12458036 12458086 -32449484 + AT_rich Low_complexity Low_complexity 1 50 0 1294 50 12 0 chr21 12459824 12459985 -32447585 + L1PA7 LINE L1 5988 6150 -4 214 210 42 28 chr21 12460099 12460151 -32447419 + (TA)n Simple_repeat Simple_repeat 2 52 -94 1763 171 3 3 chr21 12460151 12460449 -32447121 - AluJb SINE Alu -14 298 1 214 210 42 28 chr21 12460449 12460539 -32447031 + (TA)n Simple_repeat Simple_repeat 52 146 0 25 31 0 0 chr21 12461132 12461164 -32446406 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr21 12462601 12462622 -32444948 + AT_rich Low_complexity Low_complexity 1 21 0 485 237 15 15 chr21 12462949 12463084 -32444486 - MIR SINE MIR -54 208 74 423 216 0 0 chr21 12463236 12463347 -32444223 + GA-rich Low_complexity Low_complexity 6 116 0 800 321 75 67 chr21 12463766 12464438 -32443132 + L2 LINE L2 2201 2890 -423 2243 115 7 0 chr21 12464438 12464742 -32442828 - AluSg SINE Alu -4 306 1 800 321 75 67 chr21 12464742 12465168 -32442402 + L2 LINE L2 2890 3311 -2 304 293 75 20 chr21 12465181 12465328 -32442242 + L2 LINE L2 3159 3313 0 202 371 43 63 chr21 12465327 12465629 -32441941 + L2 LINE L2 2374 2669 -645 * 307 302 68 47 chr21 12465755 12465990 -32441580 + L1ME4a LINE L1 5866 6105 -16 1686 170 23 45 chr21 12466088 12466441 -32441129 + MER7A DNA MER2_type 4 346 0 1920 156 30 24 chr21 12466723 12467096 -32440474 - THE1C LTR MaLR 0 375 1 5141 120 8 5 chr21 12467096 12467848 -32439722 - THE1C-int LTR MaLR 0 1580 827 754 126 55 16 chr21 12467853 12467980 -32439590 - THE1C LTR MaLR -243 132 1 1549 108 0 9 chr21 12469737 12469997 -32437573 - AluSc SINE Alu 0 326 69 208 325 25 12 chr21 12470060 12470140 -32437430 + MIR3 SINE MIR 127 207 -1 218 217 0 0 chr21 12470406 12470452 -32437118 + (TA)n Simple_repeat Simple_repeat 1 46 0 360 298 99 42 chr21 12471170 12471502 -32436068 + L1MD2 LINE L1 45 395 -5724 22 0 0 0 chr21 12471771 12471793 -32435777 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 12472210 12472238 -32435332 + AT_rich Low_complexity Low_complexity 1 28 0 3188 231 89 42 chr21 12472489 12472801 -32434769 + L1MD2 LINE L1 572 868 -5261 229 171 0 0 chr21 12472801 12472836 -32434734 + tRNA-Arg-AGA tRNA tRNA 1 35 -41 3188 231 89 42 chr21 12472836 12473786 -32433784 + L1MD2 LINE L1 868 1929 -4200 1783 221 18 72 chr21 12473793 12474308 -32433262 + MLT1D LTR MaLR 19 505 0 2396 261 32 128 chr21 12474309 12475706 -32431864 + MLT1D-int LTR MaLR 2 1264 -107 5255 254 49 50 chr21 12475799 12478927 -32428643 + L1MD2 LINE L1 2645 5771 -571 316 123 74 12 chr21 12478979 12479141 -32428429 + (TA)n Simple_repeat Simple_repeat 1 172 0 482 113 62 0 chr21 12479153 12479313 -32428257 + (TA)n Simple_repeat Simple_repeat 2 171 0 29 47 0 0 chr21 12479313 12479356 -32428214 + AT_rich Low_complexity Low_complexity 1 43 0 366 125 79 0 chr21 12479361 12479618 -32427952 + (TA)n Simple_repeat Simple_repeat 1 277 0 435 187 37 22 chr21 12479618 12479719 -32427851 - L1MD1 LINE L1 -280 5884 5780 228 83 28 0 chr21 12479783 12479819 -32427751 + L1P5 LINE L1 5783 5819 -332 * 850 160 22 33 chr21 12479789 12479970 -32427600 + L1MD2 LINE L1 5790 5968 -274 1144 248 50 24 chr21 12479974 12480313 -32427257 + L1MD2 LINE L1 5994 6341 -1 28 48 0 0 chr21 12480702 12480744 -32426826 + AT_rich Low_complexity Low_complexity 1 42 0 380 207 47 30 chr21 12481591 12481760 -32425810 + (TA)n Simple_repeat Simple_repeat 2 173 0 22 70 0 0 chr21 12481762 12481805 -32425765 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr21 12483787 12483814 -32423756 + AT_rich Low_complexity Low_complexity 1 27 0 43683 40 1 2 chr21 12484385 12490542 -32417028 + L1PA3 LINE L1 1 6152 -3 482 315 72 37 chr21 12490552 12490938 -32416632 - L2 LINE L2 -74 3239 2766 252 0 0 0 chr21 12492206 12492234 -32415336 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2002 107 4 4 chr21 12492237 12492517 -32415053 - AluSg SINE Alu -30 280 1 987 278 93 10 chr21 12492543 12493137 -32414433 - L1ME3A LINE L1 -200 6468 5768 2476 44 7 0 chr21 12493562 12493860 -32413710 + AluY SINE Alu 1 300 -11 36 0 0 0 chr21 12493870 12493906 -32413664 + AT_rich Low_complexity Low_complexity 1 36 0 277 296 96 23 chr21 12493955 12494350 -32413220 - L1ME3A LINE L1 -2983 3661 3238 936 70 0 0 chr21 12494454 12494582 -32412988 - L1PA5 LINE L1 0 6154 6027 411 291 191 12 chr21 12494582 12495195 -32412375 - L1MEd LINE L1 -3385 3259 2577 378 289 52 69 chr21 12495795 12496203 -32411367 - L1MEd LINE L1 -4832 1763 1310 274 77 0 0 chr21 12496283 12496322 -32411248 + MADE1 DNA Mariner 42 80 0 327 289 96 54 chr21 12496325 12496585 -32410985 - L1MEd LINE L1 -5286 1348 1078 3709 117 50 33 chr21 12497244 12498215 -32409355 + MER11A LTR ERVK 1 1071 0 610 281 134 5 chr21 12498611 12498835 -32408735 + MIR SINE MIR 3 255 -7 1463 0 0 6 chr21 12500221 12500395 -32407175 + L1P LINE L1 4334 4506 -1640 8173 31 0 0 chr21 12500395 12502152 -32405418 + L1PA4 LINE L1 4382 6152 -3 22 0 0 0 chr21 12502152 12502174 -32405396 + AT_rich Low_complexity Low_complexity 1 22 0 2062 110 3 20 chr21 12503261 12503561 -32404009 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr21 12503601 12503625 -32403945 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr21 12503913 12503965 -32403605 + AT_rich Low_complexity Low_complexity 1 52 0 204 336 36 0 chr21 12504019 12504129 -32403441 - MIR SINE MIR -1 261 148 226 270 95 58 chr21 12504167 12504273 -32403297 - MIR SINE MIR -98 164 50 2156 153 0 21 chr21 12504273 12504646 -32402924 + MLT1A1 LTR MaLR 1 365 0 226 270 95 58 chr21 12504646 12504676 -32402894 - MIR SINE MIR -212 50 23 486 316 70 9 chr21 12505406 12505621 -32401949 - MIR SINE MIR 0 262 35 2148 102 0 0 chr21 12505971 12506256 -32401314 + AluSx SINE Alu 21 305 -7 27 73 0 0 chr21 12506429 12506484 -32401086 + AT_rich Low_complexity Low_complexity 1 55 0 187 234 21 0 chr21 12507200 12507247 -32400323 - L2 LINE L2 -9 3263 3216 34 42 0 0 chr21 12507528 12507576 -32399994 + AT_rich Low_complexity Low_complexity 1 48 0 214 196 20 0 chr21 12507806 12507857 -32399713 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 241 308 23 23 chr21 12508038 12508171 -32399399 + L1ME LINE L1 5529 5661 -460 2495 50 0 0 chr21 12508762 12509064 -32398506 + AluYa8 SINE Alu 1 302 -8 22 35 0 0 chr21 12509169 12509198 -32398372 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr21 12509737 12509762 -32397808 + AT_rich Low_complexity Low_complexity 1 25 0 2097 121 3 0 chr21 12509852 12510149 -32397421 + AluSx SINE Alu 5 302 -10 2760 236 116 20 chr21 12510250 12511311 -32396259 + L1M4c LINE L1 1506 2624 -869 4221 184 25 38 chr21 12511316 12512509 -32395061 + L1MB3 LINE L1 5015 6183 0 811 319 55 34 chr21 12512560 12513083 -32394487 + L1ME1 LINE L1 71 604 -5792 2053 258 93 37 chr21 12513230 12514211 -32393359 + L1ME1 LINE L1 5125 6175 -60 1522 201 10 7 chr21 12514211 12514510 -32393060 + AluJo SINE Alu 1 300 -12 2053 258 93 37 chr21 12514510 12514571 -32392999 + L1ME1 LINE L1 6175 6231 -4 231 36 0 0 chr21 12514693 12514721 -32392849 + (CA)n Simple_repeat Simple_repeat 2 29 0 41 48 0 0 chr21 12514807 12514869 -32392701 + AT_rich Low_complexity Low_complexity 1 62 0 19509 184 19 16 chr21 12515022 12519101 -32388469 + L1PA11 LINE L1 1220 5309 -837 13571 32 0 18 chr21 12519101 12521528 -32386042 + L1PA4 LINE L1 3736 6153 -2 1898 124 14 0 chr21 12521529 12521812 -32385758 + L1PA11 LINE L1 5769 6055 -119 201 167 15 30 chr21 12521990 12522056 -32385514 + A-rich Low_complexity Low_complexity 5 69 0 345 323 62 16 chr21 12522673 12522865 -32384705 + L1ME4a LINE L1 5254 5454 -2354 405 226 85 67 chr21 12523868 12524032 -32383538 + MIR3 SINE MIR 33 199 -9 219 295 24 0 chr21 12524429 12524503 -32383067 - MIR SINE MIR -62 146 78 1352 128 56 12 chr21 12524859 12525108 -32382462 + L1MA5A LINE L1 6030 6289 -8 222 282 153 40 chr21 12525288 12525412 -32382158 - MER5A DNA MER1_type -45 144 7 183 296 185 12 chr21 12525588 12525669 -32381901 - MIR SINE MIR -148 114 20 276 256 89 0 chr21 12525905 12525995 -32381575 + MER5A DNA MER1_type 9 106 -83 301 333 0 40 chr21 12525996 12526122 -32381448 + MIR3 SINE MIR 60 180 -28 1193 199 23 23 chr21 12526163 12526429 -32381141 + MER58B DNA MER1_type 59 324 -17 1766 163 7 0 chr21 12526441 12526730 -32380840 + AluJb SINE Alu 6 296 -16 180 152 0 0 chr21 12528277 12528310 -32379260 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr21 12528426 12528461 -32379109 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 12529089 12529118 -32378452 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 12529243 12529272 -32378298 + AT_rich Low_complexity Low_complexity 1 29 0 206 32 32 0 chr21 12530085 12530116 -32377454 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 180 100 0 chr21 12530118 12530168 -32377402 - MIR SINE MIR -10 252 198 439 284 91 105 chr21 12530196 12530631 -32376939 + L1ME4a LINE L1 5530 5957 -164 183 42 0 0 chr21 12530631 12530655 -32376915 + (TA)n Simple_repeat Simple_repeat 2 25 0 439 284 91 105 chr21 12530655 12530799 -32376771 + L1ME4a LINE L1 5957 6101 -20 435 38 0 0 chr21 12530952 12531005 -32376565 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 244 282 26 13 chr21 12531016 12531094 -32376476 - L2 LINE L2 -1 3312 3234 213 311 0 16 chr21 12531116 12531177 -32376393 - L2 LINE L2 -4 3309 3250 2267 99 3 0 chr21 12531355 12531649 -32375921 + AluSq SINE Alu 1 295 -18 247 234 16 0 chr21 12531688 12531752 -32375818 + (TA)n Simple_repeat Simple_repeat 1 65 0 266 330 61 9 chr21 12532669 12532784 -32374786 - MIR3 SINE MIR -48 160 40 24 53 0 0 chr21 12533738 12533776 -32373794 + GC_rich Low_complexity Low_complexity 1 38 0 333 344 51 0 chr21 12534750 12534948 -32372622 + MIR SINE MIR 19 229 -33 22 0 0 0 chr21 12535631 12535653 -32371917 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 12536559 12536583 -32370987 + AT_rich Low_complexity Low_complexity 1 24 0 351 22 22 0 chr21 12538288 12538334 -32369236 + MADE1 DNA Mariner 1 47 -33 201 343 76 35 chr21 12539072 12539244 -32368326 - MIR SINE MIR -46 216 38 250 226 0 40 chr21 12539860 12539984 -32367586 + (TA)n Simple_repeat Simple_repeat 2 120 0 214 306 0 20 chr21 12540300 12540349 -32367221 + MIR SINE MIR 34 81 -181 273 254 186 34 chr21 12540446 12540564 -32367006 + MIR SINE MIR 119 254 -8 1378 201 51 0 chr21 12541048 12541302 -32366268 - MLT1C LTR MaLR 0 467 201 1146 195 54 128 chr21 12541310 12541772 -32365798 + MSTC LTR MaLR 1 428 0 1165 149 10 5 chr21 12541772 12541966 -32365604 - MLT1C LTR MaLR -272 195 1 1587 158 56 11 chr21 12542506 12542790 -32364780 + AluSx SINE Alu 1 297 -15 340 316 51 0 chr21 12543111 12543228 -32364342 - MIR SINE MIR -69 139 17 272 130 0 87 chr21 12543591 12543660 -32363910 + MER3 DNA MER1_type 112 122 -87 * 1585 174 74 14 chr21 12543658 12544003 -32363567 + MER3 DNA MER1_type 2235 2605 -19 2169 120 0 3 chr21 12544003 12544312 -32363258 + AluSx SINE Alu 1 308 -4 1585 174 74 14 chr21 12544312 12544333 -32363237 + MER3 DNA MER1_type 2605 2623 -1 26 30 0 0 chr21 12545989 12546022 -32361548 + AT_rich Low_complexity Low_complexity 1 33 0 1800 141 25 40 chr21 12546156 12546510 -32361060 + THE1C LTR MaLR 1 349 -26 10016 104 14 61 chr21 12546525 12548177 -32359393 + THE1C-int LTR MaLR 6 1580 0 2049 127 29 35 chr21 12548177 12548554 -32359016 + THE1C LTR MaLR 1 375 0 215 365 115 13 chr21 12549598 12549754 -32357816 + L2 LINE L2 2271 2442 -872 283 396 67 7 chr21 12551470 12551619 -32355951 - HAL1 LINE L1 -2076 431 274 2270 295 86 19 chr21 12551674 12552727 -32354843 - L2 LINE L2 -55 3258 1918 1845 147 7 3 chr21 12552727 12553019 -32354551 + AluSx SINE Alu 1 293 -19 2270 295 86 19 chr21 12553019 12553250 -32354320 - L2 LINE L2 -1395 1918 1704 21 36 0 0 chr21 12553684 12553712 -32353858 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr21 12555492 12555519 -32352051 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 254 254 46 77 chr21 12557179 12557309 -32350261 - L1M2 LINE L1 -715 5576 5451 440 320 99 29 chr21 12557374 12557790 -32349780 - L1M4 LINE L1 -747 5399 4955 1795 189 22 38 chr21 12558931 12559302 -32348268 + MLT1A1 LTR MaLR 1 365 0 2737 144 31 54 chr21 12559850 12560406 -32347164 + L1MA7 LINE L1 5720 6262 -29 1000 305 58 13 chr21 12560483 12560877 -32346693 + MLT2F LTR ERVL 5 416 -247 342 0 0 0 chr21 12560891 12560929 -32346641 + (TG)n Simple_repeat Simple_repeat 2 39 0 471 116 0 0 chr21 12561664 12561733 -32345837 - LTR1B LTR ERV1 0 826 758 1081 300 48 31 chr21 12562182 12562595 -32344975 + MLT1H1 LTR MaLR 9 428 -127 2343 290 95 15 chr21 12563835 12564643 -32342927 + L2 LINE L2 20 892 -2422 2527 133 41 7 chr21 12565252 12565666 -32341904 - MSTA LTR MaLR 0 428 1 4802 100 115 167 chr21 12566636 12567966 -32339604 + MER11A LTR ERVK 1 1261 -5 1468 105 38 0 chr21 12568463 12568672 -32338898 - AluSg/x SINE Alu -13 299 83 1893 143 20 31 chr21 12570294 12570644 -32336926 - MER7A DNA MER2_type 0 346 3 450 0 0 0 chr21 12571736 12571786 -32335784 + (TG)n Simple_repeat Simple_repeat 2 51 0 250 207 17 17 chr21 12572203 12572261 -32335309 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 929 174 69 21 chr21 12572728 12573063 -32334507 - L1MC/D LINE L1 -745 5401 5140 4558 113 12 1 chr21 12573070 12573754 -32333816 - L1PA11 LINE L1 -3 6171 5481 602 159 0 0 chr21 12573756 12573863 -32333707 - L1M4 LINE L1 -1293 4853 4747 2537 28 0 0 chr21 12574166 12574451 -32333119 - AluY SINE Alu -19 292 8 476 73 0 12 chr21 12574663 12574745 -32332825 - L1PB1 LINE L1 -1 6150 6070 296 226 28 23 chr21 12574764 12574941 -32332629 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 201 0 0 chr21 12574975 12575035 -32332535 + MLT2C2 LTR ERVL 417 463 -1 611 239 0 0 chr21 12575127 12575257 -32332313 - LTR16A LTR ERVL -5 445 316 553 307 42 17 chr21 12575289 12575527 -32332043 - LTR16A LTR ERVL -205 245 2 2103 111 6 22 chr21 12575582 12575898 -32331672 - AluSq SINE Alu -2 311 1 1113 160 0 57 chr21 12576304 12576516 -32331054 + AluJb SINE Alu 110 309 -3 594 286 17 36 chr21 12576527 12576939 -32330631 + L1M4 LINE L1 2215 2618 -3528 726 226 13 19 chr21 12577092 12577251 -32330319 + MER58A DNA MER1_type 1 158 0 868 248 22 13 chr21 12577254 12577480 -32330090 + ERVL LTR ERVL 4862 5089 -675 506 284 120 27 chr21 12578149 12578374 -32329196 + MIR SINE MIR 7 252 -10 23 33 0 0 chr21 12578715 12578745 -32328825 + AT_rich Low_complexity Low_complexity 1 30 0 1437 180 41 35 chr21 12578957 12579284 -32328286 + MER61B LTR ERV1 1 423 -2 247 301 140 5 chr21 12580069 12580255 -32327315 + L1ME LINE L1 5604 5814 -307 512 224 33 20 chr21 12581223 12581375 -32326195 - HsTC2 DNA Tc2 -9 1889 1736 302 259 12 12 chr21 12581412 12581493 -32326077 - HsTC2 DNA Tc2 -560 1338 1258 610 214 62 142 chr21 12581543 12582127 -32325443 + MER34 LTR ERV1 1 537 -5 541 292 57 50 chr21 12582134 12582415 -32325155 + L2 LINE L2 3031 3313 0 198 337 31 10 chr21 12582728 12582826 -32324744 + MIR SINE MIR 163 262 0 235 350 140 46 chr21 12583167 12583287 -32324283 + L2 LINE L2 2932 3039 -274 2176 126 103 5 chr21 12583287 12583676 -32323894 + MSTA LTR MaLR 1 427 -1 235 350 140 46 chr21 12583676 12583904 -32323666 + L2 LINE L2 3039 3313 0 190 320 96 51 chr21 12584129 12584326 -32323244 + MIR3 SINE MIR 2 207 -1 217 284 23 57 chr21 12585367 12585455 -32322115 - MIR SINE MIR -131 131 47 445 212 76 0 chr21 12585640 12585700 -32321870 - L1ME4a LINE L1 -1 6120 6066 225 0 0 0 chr21 12585700 12585725 -32321845 + (TA)n Simple_repeat Simple_repeat 2 26 0 445 212 76 0 chr21 12585725 12585782 -32321788 - L1ME4a LINE L1 -55 6066 5994 23 33 0 0 chr21 12585850 12585880 -32321690 + AT_rich Low_complexity Low_complexity 1 30 0 2158 209 56 47 chr21 12585880 12586580 -32320990 + Charlie1 DNA MER1_type 2052 2757 -4 2248 104 3 3 chr21 12586600 12586907 -32320663 + AluSc SINE Alu 1 307 -2 612 276 85 41 chr21 12587014 12587260 -32320310 - MIR SINE MIR 0 262 6 808 238 47 114 chr21 12587470 12587546 -32320024 + MLT1A1 LTR MaLR 6 86 -279 2233 115 0 0 chr21 12587546 12587851 -32319719 - AluSg SINE Alu -5 305 1 808 238 47 114 chr21 12587851 12588160 -32319410 + MLT1A1 LTR MaLR 86 365 0 284 158 18 0 chr21 12588623 12588680 -32318890 + (TA)n Simple_repeat Simple_repeat 1 58 0 321 150 33 0 chr21 12588681 12588741 -32318829 - Charlie1 DNA MER1_type -619 2142 2081 21 0 0 0 chr21 12592583 12592604 -32314966 + AT_rich Low_complexity Low_complexity 1 21 0 848 173 0 19 chr21 12593015 12593217 -32314353 + AluJb SINE Alu 2 291 -21 214 316 38 110 chr21 12593423 12593660 -32313910 - L2 LINE L2 0 3272 3053 346 323 65 62 chr21 12593826 12594086 -32313484 + MIR SINE MIR 1 261 -1 2028 139 0 0 chr21 12594090 12594385 -32313185 + AluSx SINE Alu 3 297 -15 980 246 73 26 chr21 12595531 12595894 -32311676 - MLT1H LTR MaLR -167 388 1 188 67 33 0 chr21 12596772 12596802 -32310768 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 299 130 19 0 chr21 12596886 12596940 -32310630 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 27 29 0 0 chr21 12597192 12597226 -32310344 + AT_rich Low_complexity Low_complexity 1 34 0 606 335 62 56 chr21 12598518 12598605 -32308965 - L2 LINE L2 -908 2406 2321 6854 106 5 9 chr21 12598605 12599578 -32307992 - LTR5 LTR ERVK 0 969 1 606 335 62 56 chr21 12599578 12600025 -32307545 - L2 LINE L2 -993 2321 1869 2281 83 0 10 chr21 12600322 12600635 -32306935 + AluY SINE Alu 1 310 -1 24 0 0 0 chr21 12600690 12600714 -32306856 + AT_rich Low_complexity Low_complexity 1 24 0 1976 62 0 12 chr21 12601554 12601823 -32305747 - AluY SINE Alu 0 306 41 2527 105 22 8 chr21 12602065 12602435 -32305135 - THE1C LTR MaLR 0 375 1 476 319 113 60 chr21 12603629 12603768 -32303802 - MLT1L LTR MaLR -18 597 467 1982 147 0 0 chr21 12603768 12604067 -32303503 + AluSx SINE Alu 1 299 -13 476 319 113 60 chr21 12604067 12604494 -32303076 - MLT1L LTR MaLR -148 467 1 264 281 86 14 chr21 12604644 12604783 -32302787 - MLT1H LTR MaLR -341 208 60 2067 155 120 73 chr21 12606447 12606937 -32300633 - MLT2B2 LTR ERVL -2 513 1 552 297 30 6 chr21 12606945 12607110 -32300460 - MIR SINE MIR -70 192 24 210 91 0 0 chr21 12607179 12607212 -32300358 + (CA)n Simple_repeat Simple_repeat 2 34 0 1691 286 60 17 chr21 12607579 12608408 -32299162 - L2 LINE L2 -4 3309 2444 216 0 0 0 chr21 12609122 12609146 -32298424 + (TG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chr21 12609601 12609626 -32297944 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr21 12610200 12610224 -32297346 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1915 153 13 0 chr21 12610829 12611142 -32296428 + L1MC1 LINE L1 5997 6313 -20 1940 173 155 14 chr21 12611156 12611743 -32295827 - MER39 LTR ERV1 0 707 1 1884 161 38 16 chr21 12612150 12612517 -32295053 - THE1C LTR MaLR 0 375 1 2246 124 4 29 chr21 12612751 12612890 -32294680 + L1PB4 LINE L1 5658 5799 -357 444 118 0 0 chr21 12612890 12612958 -32294612 + (CA)n Simple_repeat Simple_repeat 2 69 0 2246 124 4 29 chr21 12612958 12613269 -32294301 + L1PB4 LINE L1 5799 6156 0 919 183 35 25 chr21 12613344 12613541 -32294029 + MER3 DNA MER1_type 2 200 -9 606 60 0 12 chr21 12614732 12614902 -32292668 - AluY SINE Alu 0 311 210 242 32 0 0 chr21 12614902 12614933 -32292637 - AluY SINE Alu -268 32 2 1537 200 16 16 chr21 12615316 12615681 -32291889 - L1MB1 LINE L1 -1 6167 5803 21 0 0 0 chr21 12616021 12616042 -32291528 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr21 12616421 12616447 -32291123 + AT_rich Low_complexity Low_complexity 1 26 0 2665 101 11 0 chr21 12616473 12616850 -32290720 - L1PA11 LINE L1 0 6174 5794 642 324 130 8 chr21 12617476 12617846 -32289724 - L2 LINE L2 0 3313 2899 189 269 82 112 chr21 12617917 12618051 -32289519 - L2 LINE L2 -2 3270 3141 2320 97 7 0 chr21 12618754 12619064 -32288506 + AluSp SINE Alu 1 312 -1 21 71 0 0 chr21 12619234 12619276 -32288294 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr21 12619465 12619514 -32288056 + AT_rich Low_complexity Low_complexity 1 49 0 439 372 33 0 chr21 12620328 12620511 -32287059 - MIR SINE MIR -1 261 73 1747 208 14 54 chr21 12620513 12620940 -32286630 - MLT2D LTR ERVL 0 414 5 2146 103 3 0 chr21 12620943 12621277 -32286293 + AluSp SINE Alu 1 335 0 260 70 23 0 chr21 12621788 12621831 -32285739 + (TG)n Simple_repeat Simple_repeat 1 44 0 368 275 162 18 chr21 12622411 12622578 -32284992 - MIR SINE MIR -6 256 66 211 136 68 0 chr21 12623568 12623612 -32283958 + T-rich Low_complexity Low_complexity 5 51 0 4025 161 80 16 chr21 12624898 12625724 -32281846 + L1MA9 LINE L1 5434 6312 0 22 0 0 0 chr21 12627804 12627826 -32279744 + AT_rich Low_complexity Low_complexity 1 22 0 370 383 82 26 chr21 12627841 12628110 -32279460 - L2 LINE L2 -9 3263 2980 414 272 19 38 chr21 12629733 12629891 -32277679 + LTR16A LTR ERVL 220 374 -76 2234 140 20 43 chr21 12629923 12630322 -32277248 + MLT1B LTR MaLR 1 390 0 33 43 0 0 chr21 12630456 12630503 -32277067 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr21 12630889 12630911 -32276659 + AT_rich Low_complexity Low_complexity 1 22 0 193 339 104 9 chr21 12632161 12632276 -32275294 - L2 LINE L2 0 3272 3147 270 344 82 8 chr21 12633027 12633149 -32274421 + L2 LINE L2 3134 3264 -8 29 0 0 0 chr21 12634349 12634378 -32273192 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 12634655 12634685 -32272885 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr21 12635633 12635656 -32271914 + AT_rich Low_complexity Low_complexity 1 23 0 259 257 168 44 chr21 12636503 12636616 -32270954 + L2 LINE L2 3146 3272 0 974 335 79 14 chr21 12637498 12637990 -32269580 + MER115 DNA AcHobo 170 693 0 2755 189 22 15 chr21 12638254 12638800 -32268770 - MER44D DNA MER2_type 0 605 1 2571 34 0 3 chr21 12639307 12639602 -32267968 - AluY SINE Alu -17 294 1 198 317 156 60 chr21 12639689 12639856 -32267714 - MIR SINE MIR -69 193 11 252 321 89 21 chr21 12639968 12640158 -32267412 + MIR SINE MIR 60 262 0 295 294 54 0 chr21 12640322 12640414 -32267156 - MIR3 SINE MIR -9 199 103 442 260 44 55 chr21 12640531 12640712 -32266858 + MIR SINE MIR 77 255 -7 787 116 18 24 chr21 12641688 12641852 -32265718 + GA-rich Low_complexity Low_complexity 4 166 0 2167 122 3 0 chr21 12642057 12642353 -32265217 + AluSx SINE Alu 1 297 -15 2418 274 62 26 chr21 12642637 12643767 -32263803 + L2 LINE L2 2138 3313 0 197 325 92 17 chr21 12643782 12643902 -32263668 - L3b LINE CR1 -26 1557 1429 22 70 0 0 chr21 12644208 12644251 -32263319 + AT_rich Low_complexity Low_complexity 1 43 0 607 219 8 8 chr21 12644278 12644462 -32263108 + FLAM_A SINE Alu 1 184 0 345 100 0 0 chr21 12644465 12644515 -32263055 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 28744 126 16 70 chr21 12644519 12649973 -32257597 + L1P LINE L1 1 5161 -985 234 0 0 0 chr21 12649980 12650006 -32257564 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 783 136 28 11 chr21 12650007 12650183 -32257387 + GA-rich Low_complexity Low_complexity 1 179 0 1897 155 0 0 chr21 12650548 12650826 -32256744 + AluSx SINE Alu 1 278 -34 221 130 14 58 chr21 12652416 12652485 -32255085 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 256 148 33 0 chr21 12652597 12652658 -32254912 + CT-rich Low_complexity Low_complexity 5 67 0 736 291 157 31 chr21 12652893 12653420 -32254150 - L2 LINE L2 -1001 2313 1695 210 71 0 0 chr21 12653420 12653448 -32254122 + (TTG)n Simple_repeat Simple_repeat 2 29 0 736 291 157 31 chr21 12653448 12653538 -32254032 - L2 LINE L2 -1619 1695 1618 380 275 22 0 chr21 12654039 12654130 -32253440 + MER81 DNA DNA 20 112 -2 497 352 80 46 chr21 12654219 12654781 -32252789 - L2 LINE L2 -2425 889 309 300 338 181 5 chr21 12655117 12655333 -32252237 - MIR SINE MIR -6 256 3 284 254 56 0 chr21 12655884 12655955 -32251615 - MIR SINE MIR -71 191 117 363 265 0 12 chr21 12657100 12657183 -32250387 + MIR3 SINE MIR 113 194 -14 356 218 0 0 chr21 12657467 12657545 -32250025 + MER116 DNA Mariner 3 80 0 397 253 0 0 chr21 12657939 12658022 -32249548 - MER103 DNA DNA -78 88 6 26 30 0 0 chr21 12659227 12659260 -32248310 + AT_rich Low_complexity Low_complexity 1 33 0 257 254 151 30 chr21 12660631 12660863 -32246707 + HAL1 LINE L1 995 1254 -1253 2377 90 0 0 chr21 12660902 12661212 -32246358 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 12661692 12661715 -32245855 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 253 340 62 19 chr21 12661825 12661987 -32245583 - MLT1K LTR MaLR -46 542 374 555 269 79 47 chr21 12662221 12662474 -32245096 - MLT1I LTR MaLR -148 261 1 2317 80 3 0 chr21 12663283 12663572 -32243998 + AluSp SINE Alu 1 290 -23 278 105 0 0 chr21 12663572 12663610 -32243960 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 593 141 39 19 chr21 12663610 12663766 -32243804 + GA-rich Low_complexity Low_complexity 1 159 0 1245 206 35 16 chr21 12663924 12664240 -32243330 - MER33 DNA MER1_type -1 323 2 1818 138 46 3 chr21 12664801 12665083 -32242487 + AluSg SINE Alu 1 294 -16 1064 246 145 22 chr21 12665921 12666328 -32241242 - LTR16B LTR ERVL -7 457 1 21 0 0 0 chr21 12667290 12667311 -32240259 + AT_rich Low_complexity Low_complexity 1 21 0 267 294 118 8 chr21 12667942 12668061 -32239509 + MIR3 SINE MIR 30 161 -47 416 279 27 9 chr21 12668093 12668204 -32239366 + MER5A DNA MER1_type 77 189 0 466 317 81 12 chr21 12668476 12668722 -32238848 + Charlie8 DNA MER1_type 19 281 -2136 27 29 0 0 chr21 12668794 12668828 -32238742 + AT_rich Low_complexity Low_complexity 1 34 0 1881 144 7 17 chr21 12669018 12669317 -32238253 - AluSx SINE Alu -16 296 1 1698 197 32 91 chr21 12669351 12669442 -32238128 - MLT1C LTR MaLR -3 464 369 186 43 0 0 chr21 12669442 12669465 -32238105 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1421 156 3 122 chr21 12669467 12669662 -32237908 - AluJo SINE Alu -19 283 139 230 0 33 0 chr21 12669662 12669692 -32237878 + (TA)n Simple_repeat Simple_repeat 2 32 0 1421 156 3 122 chr21 12669692 12669817 -32237753 - AluJo SINE Alu -163 139 1 1698 197 32 91 chr21 12669817 12670215 -32237355 - MLT1C LTR MaLR -99 368 1 22 35 0 0 chr21 12670642 12670671 -32236899 + AT_rich Low_complexity Low_complexity 1 29 0 751 221 178 0 chr21 12671912 12672170 -32235400 - MER46C DNA MER2_type -11 327 24 23 54 0 0 chr21 12672622 12672659 -32234911 + AT_rich Low_complexity Low_complexity 1 37 0 1424 200 70 0 chr21 12672820 12672916 -32234654 + AluJo SINE Alu 22 110 -202 615 14 0 0 chr21 12672916 12672988 -32234582 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1424 200 70 0 chr21 12672988 12673161 -32234409 + AluJo SINE Alu 110 310 -2 24 77 0 0 chr21 12673329 12673381 -32234189 + AT_rich Low_complexity Low_complexity 1 52 0 21 82 0 0 chr21 12674243 12674292 -32233278 + AT_rich Low_complexity Low_complexity 1 49 0 653 293 155 6 chr21 12674429 12674746 -32232824 + L2 LINE L2 1718 2081 -1233 494 263 230 20 chr21 12674804 12675104 -32232466 + L2 LINE L2 2951 3313 0 354 315 27 27 chr21 12675783 12675967 -32231603 + L1ME4a LINE L1 5750 5933 -188 2219 112 0 0 chr21 12677511 12677806 -32229764 + AluSx SINE Alu 3 297 -15 593 271 79 113 chr21 12679052 12679581 -32227989 + L2 LINE L2 2794 3312 -1 24 0 0 0 chr21 12679670 12679694 -32227876 + AT_rich Low_complexity Low_complexity 1 24 0 2250 78 0 0 chr21 12680583 12680908 -32226662 - AluSq SINE Alu 0 325 1 245 350 48 10 chr21 12681172 12681275 -32226295 + L2 LINE L2 3203 3309 -4 1348 199 16 51 chr21 12681327 12681638 -32225932 + AluJo SINE Alu 1 300 -12 24 77 0 0 chr21 12681735 12681787 -32225783 + AT_rich Low_complexity Low_complexity 1 52 0 1048 233 75 49 chr21 12682397 12682783 -32224787 + L1ME3A LINE L1 5751 6146 -24 21 57 0 0 chr21 12682874 12682909 -32224661 + AT_rich Low_complexity Low_complexity 1 35 0 247 281 74 37 chr21 12683182 12683317 -32224253 - MIR SINE MIR -15 247 108 378 149 0 15 chr21 12683538 12683605 -32223965 - MER116 DNA Mariner 0 80 15 677 312 80 4 chr21 12683744 12683981 -32223589 + MIR SINE MIR 8 262 0 2126 133 0 0 chr21 12684050 12684343 -32223227 - AluSx SINE Alu -17 295 3 1844 112 89 0 chr21 12684351 12684620 -32222950 - AluY SINE Alu -14 297 5 506 209 9 9 chr21 12685620 12685735 -32221835 - L1MEc LINE L1 -6246 150 36 522 297 79 55 chr21 12685846 12686263 -32221307 - MLT1J LTR MaLR -84 427 1 226 135 58 0 chr21 12686454 12686506 -32221064 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 1961 131 7 0 chr21 12686823 12687105 -32220465 + AluSx SINE Alu 1 284 -28 642 271 62 36 chr21 12687413 12687638 -32219932 + MIR SINE MIR 12 242 -20 709 235 47 127 chr21 12687640 12688232 -32219338 - MLT1F LTR MaLR -8 559 1 220 209 0 0 chr21 12691979 12692022 -32215548 + (TATG)n Simple_repeat Simple_repeat 2 44 0 803 164 0 0 chr21 12692114 12692236 -32215334 + FLAM_C SINE Alu 2 123 -20 25 0 0 0 chr21 12692242 12692267 -32215303 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 12692330 12692351 -32215219 + AT_rich Low_complexity Low_complexity 1 21 0 1071 68 0 0 chr21 12693165 12693297 -32214273 - AluY SINE Alu -179 132 1 2117 50 0 8 chr21 12693840 12694101 -32213469 + AluY SINE Alu 46 304 -7 566 323 41 41 chr21 12694332 12694623 -32212947 + L2 LINE L2 2861 3151 -162 1083 239 5 5 chr21 12694630 12694843 -32212727 + MER20 DNA MER1_type 1 213 -6 192 295 0 39 chr21 12694852 12694930 -32212640 + L2 LINE L2 3158 3232 -81 1988 160 48 34 chr21 12695196 12695738 -32211832 + MLT2A2 LTR ERVL 3 554 0 224 228 0 0 chr21 12696095 12696152 -32211418 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2223 120 0 0 chr21 12696284 12696583 -32210987 - AluSg SINE Alu -11 299 1 1462 108 25 0 chr21 12697489 12697693 -32209877 + AluSg/x SINE Alu 91 299 -13 425 297 90 33 chr21 12697970 12698182 -32209388 + L1ME LINE L1 5263 5486 -635 370 300 136 0 chr21 12698185 12698465 -32209105 + L1ME LINE L1 5507 5824 -297 369 326 105 11 chr21 12698577 12698758 -32208812 + MLT1L LTR MaLR 350 547 -68 216 238 298 0 chr21 12699903 12699987 -32207583 + L2 LINE L2 3196 3304 -9 198 118 0 0 chr21 12701576 12701610 -32205960 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 247 239 57 57 chr21 12702293 12702381 -32205189 + MLT1L LTR MaLR 1 88 -527 1307 235 107 28 chr21 12702438 12702989 -32204581 - MLT1E2 LTR MaLR 0 626 3 240 186 29 14 chr21 12703037 12703107 -32204463 - MLT1E2-int LTR MaLR -64 1307 1237 479 242 42 124 chr21 12703305 12703636 -32203934 - L1MC5 LINE L1 -974 6987 6684 617 237 0 0 chr21 12703856 12703991 -32203579 + FLAM_A SINE Alu 8 142 0 24 53 0 0 chr21 12704120 12704158 -32203412 + AT_rich Low_complexity Low_complexity 1 38 0 258 297 52 19 chr21 12704455 12704558 -32203012 + L1ME1 LINE L1 5350 5461 -660 1923 219 19 17 chr21 12704558 12705023 -32202547 + MLT1C LTR MaLR 1 466 -1 258 297 52 19 chr21 12705023 12705074 -32202496 + L1ME1 LINE L1 5461 5509 -612 241 313 27 9 chr21 12705213 12705325 -32202245 + L1ME LINE L1 100 213 -6183 1389 251 61 14 chr21 12705518 12706280 -32201290 + L1ME LINE L1 5027 5838 -395 1190 261 80 27 chr21 12706312 12706725 -32200845 + L1ME1 LINE L1 5661 6095 -71 300 218 35 0 chr21 12706765 12706855 -32200715 + L1ME1 LINE L1 6084 6184 0 1220 244 147 10 chr21 12707256 12707662 -32199908 - L1ME LINE L1 -3218 2862 2370 324 0 0 0 chr21 12707662 12707698 -32199872 + (TG)n Simple_repeat Simple_repeat 1 36 0 1220 244 147 10 chr21 12707698 12707803 -32199767 - L1ME LINE L1 -3710 2370 2281 456 206 113 0 chr21 12707827 12707924 -32199646 - MER96 DNA MER1_type? -41 134 27 1011 268 91 84 chr21 12707990 12708108 -32199462 - L1ME LINE L1 -3935 2326 2210 1182 176 14 9 chr21 12708108 12708324 -32199246 + L1PB4 LINE L1 5928 6144 -12 1011 268 91 84 chr21 12708324 12708786 -32198784 - L1ME LINE L1 -4051 2210 1753 2101 65 76 7 chr21 12708786 12709077 -32198493 - AluY SINE Alu 0 311 1 1011 268 91 84 chr21 12709077 12710055 -32197515 - L1ME LINE L1 -4508 1753 721 229 391 30 0 chr21 12710800 12710933 -32196637 + MER117 DNA MER1_type 45 181 -16 309 328 60 0 chr21 12711050 12711166 -32196404 + L2 LINE L2 3191 3313 0 814 230 16 109 chr21 12712034 12712264 -32195306 - MLT1B LTR MaLR 0 390 217 189 94 0 0 chr21 12712264 12712296 -32195274 + (TG)n Simple_repeat Simple_repeat 2 33 0 814 230 16 109 chr21 12712296 12712495 -32195075 - MLT1B LTR MaLR -173 217 1 208 137 98 0 chr21 12713645 12713696 -32193874 + CT-rich Low_complexity Low_complexity 1 56 0 265 302 0 23 chr21 12713723 12713809 -32193761 - L2 LINE L2 -55 3217 3134 407 293 64 21 chr21 12714475 12714663 -32192907 - L1MC4a LINE L1 -1898 5910 5715 38 51 0 0 chr21 12714995 12715054 -32192516 + AT_rich Low_complexity Low_complexity 1 59 0 948 292 118 13 chr21 12715481 12715854 -32191716 - MLT2F LTR ERVL -233 430 19 612 290 80 17 chr21 12715915 12716215 -32191355 - L1ME3A LINE L1 -321 5849 5531 2688 124 70 0 chr21 12716218 12716687 -32190883 - L1MA4 LINE L1 -6 6294 5793 2912 129 13 6 chr21 12716687 12717204 -32190366 + L1M1 LINE L1 5203 5723 -580 546 300 125 19 chr21 12717192 12718013 -32189557 - L1ME3A LINE L1 -614 5548 4640 * 230 307 147 32 chr21 12719100 12719318 -32188252 + MIR SINE MIR 20 262 0 1431 121 84 115 chr21 12720886 12721208 -32186362 - AluJb SINE Alu 0 312 1 39 38 0 0 chr21 12721804 12721857 -32185713 + AT_rich Low_complexity Low_complexity 1 53 0 691 186 0 0 chr21 12721857 12721975 -32185595 - AluJb SINE Alu -194 118 1 23 33 0 0 chr21 12722092 12722122 -32185448 + AT_rich Low_complexity Low_complexity 1 30 0 349 329 132 0 chr21 12722485 12722652 -32184918 - MIR SINE MIR 0 262 74 4791 148 13 37 chr21 12723487 12723602 -32183968 - L1MA3 LINE L1 0 6305 6189 2076 128 103 30 chr21 12723602 12723999 -32183571 + MSTB LTR MaLR 1 426 0 4791 148 13 37 chr21 12723999 12725161 -32182409 - L1MA3 LINE L1 -116 6189 5084 856 131 103 40 chr21 12725161 12725274 -32182296 + MSTA LTR MaLR 243 347 -81 185 0 40 0 chr21 12725274 12725299 -32182271 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7186 10 0 13 chr21 12725299 12726121 -32181449 - L1PA3 LINE L1 -7 6148 5328 856 131 103 40 chr21 12726121 12726181 -32181389 + MSTA LTR MaLR 346 428 0 4931 158 26 2 chr21 12726213 12727144 -32180426 - L1MA3 LINE L1 -1071 5075 4123 5512 141 13 4 chr21 12727326 12727463 -32180107 - L1PA15 LINE L1 0 6165 6031 192 40 0 0 chr21 12727463 12727488 -32180082 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5512 141 13 4 chr21 12727488 12729017 -32178553 - L1PA15 LINE L1 -134 6031 4486 2886 201 36 8 chr21 12729020 12729627 -32177943 - L1PA15 LINE L1 -1752 4394 3771 24 0 0 0 chr21 12731254 12731278 -32176292 + AT_rich Low_complexity Low_complexity 1 24 0 1997 147 0 0 chr21 12731285 12731571 -32175999 - AluSx SINE Alu -26 286 1 1302 194 24 76 chr21 12732007 12732348 -32175222 + MLT1B LTR MaLR 12 334 -56 512 335 70 68 chr21 12732383 12732909 -32174661 + L1MEd LINE L1 80 606 -5513 315 258 114 30 chr21 12732990 12733157 -32174413 + L1MEd LINE L1 746 926 -5193 24 0 0 0 chr21 12733239 12733263 -32174307 + AT_rich Low_complexity Low_complexity 1 24 0 348 180 0 0 chr21 12733267 12733328 -32174242 + MSTB2 LTR MaLR 397 457 0 667 224 57 29 chr21 12733328 12733538 -32174032 + L1ME3 LINE L1 5939 6154 -8 3489 270 75 97 chr21 12733598 12736074 -32171496 + L1MA9 LINE L1 402 2767 -4799 1041 185 0 0 chr21 12736076 12736254 -32171316 + MER46A DNA MER2_type 1 178 -58 334 118 20 0 chr21 12736324 12736375 -32171195 + MER46A DNA MER2_type 185 236 0 1508 237 29 102 chr21 12736388 12737038 -32170532 + L1MEd LINE L1 932 1534 -4597 19742 169 19 21 chr21 12737057 12742800 -32164770 + L1MA1 LINE L1 22 5749 -1972 1575 183 7 33 chr21 12742800 12742981 -32164589 - AluJb SINE Alu -14 298 127 437 0 19 0 chr21 12742981 12743034 -32164536 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1575 183 7 33 chr21 12743034 12743158 -32164412 - AluJb SINE Alu -185 127 1 19742 169 19 21 chr21 12743158 12745124 -32162446 + L1MA1 LINE L1 5749 7717 -4 9513 197 64 97 chr21 12745128 12746318 -32161252 + L1MA9 LINE L1 3052 4280 -3451 1823 188 35 14 chr21 12746318 12746685 -32160885 - THE1C LTR MaLR 0 375 1 9513 197 64 97 chr21 12746685 12746887 -32160683 + L1MA9 LINE L1 4280 4487 -3244 2074 99 10 23 chr21 12746887 12747191 -32160379 + AluSc SINE Alu 1 300 -9 9513 197 64 97 chr21 12747191 12748224 -32159346 + L1MA9 LINE L1 4487 5553 -2178 201 39 0 0 chr21 12748224 12748250 -32159320 + (CA)n Simple_repeat Simple_repeat 2 27 0 9513 197 64 97 chr21 12748250 12748568 -32159002 + L1MA9 LINE L1 5553 5880 -1851 1055 178 11 30 chr21 12748568 12748872 -32158698 + MER2 DNA MER2_type 9 344 -1 9513 197 64 97 chr21 12748872 12750362 -32157208 + L1MA9 LINE L1 5880 7444 -287 1586 171 11 82 chr21 12750372 12750728 -32156842 + MLT1B LTR MaLR 55 385 -5 4619 178 56 37 chr21 12751329 12752341 -32155229 + L1MC3 LINE L1 6754 7785 0 1012 98 0 0 chr21 12752617 12752749 -32154821 - AluY SINE Alu -179 132 1 494 178 44 15 chr21 12752926 12753061 -32154509 - Charlie7 DNA MER1_type 0 2612 2474 434 193 220 50 chr21 12753166 12753384 -32154186 - MLT1G LTR MaLR 0 590 336 570 122 0 0 chr21 12753412 12753510 -32154060 + (TG)n Simple_repeat Simple_repeat 2 99 0 540 261 117 52 chr21 12753515 12753764 -32153806 - MLT1G LTR MaLR -322 268 4 327 105 0 0 chr21 12754085 12754142 -32153428 + (T)n Simple_repeat Simple_repeat 1 57 0 537 131 33 6 chr21 12754301 12754547 -32153023 + AluSx SINE Alu 1 304 -8 2304 61 3 10 chr21 12756917 12757211 -32150359 - AluY SINE Alu -17 294 3 341 301 50 20 chr21 12757262 12757461 -32150109 - L1M4 LINE L1 -1175 4971 4767 265 283 56 32 chr21 12757686 12757937 -32149633 - L1M4 LINE L1 -1712 4434 4178 214 39 0 0 chr21 12758113 12758139 -32149431 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2021 127 0 7 chr21 12758139 12758423 -32149147 - AluSx SINE Alu -1 309 3 23 54 0 0 chr21 12758428 12758465 -32149105 + AT_rich Low_complexity Low_complexity 1 37 0 210 216 69 78 chr21 12760164 12760266 -32147304 - MIR SINE MIR -50 212 112 21 0 0 0 chr21 12760607 12760628 -32146942 + AT_rich Low_complexity Low_complexity 1 21 0 477 169 0 0 chr21 12760891 12760968 -32146602 - AluJ/FLAM SINE Alu -235 77 1 186 324 27 36 chr21 12762515 12762626 -32144944 - MIR SINE MIR -24 238 129 406 316 163 39 chr21 12762634 12763163 -32144407 + L2 LINE L2 2472 3068 -245 314 24 0 24 chr21 12763747 12763788 -32143782 + L1M1 LINE L1 5664 5703 -599 350 299 39 16 chr21 12763816 12763943 -32143627 + L2 LINE L2 3181 3310 -3 332 271 12 35 chr21 12763944 12764029 -32143541 - MIR SINE MIR -158 104 22 23 33 0 0 chr21 12765546 12765576 -32141994 + AT_rich Low_complexity Low_complexity 1 30 0 2112 169 38 6 chr21 12765608 12765974 -32141596 - MLT1B LTR MaLR -8 382 5 229 318 23 23 chr21 12766198 12766286 -32141284 - L2 LINE L2 -2408 906 819 313 309 115 36 chr21 12766416 12766581 -32140989 - MIR SINE MIR -65 197 20 2383 99 0 3 chr21 12766808 12767121 -32140449 - AluSp SINE Alu -1 312 1 480 246 20 56 chr21 12767382 12767577 -32139993 - MER112 DNA MER1_type -35 225 38 253 285 35 42 chr21 12768026 12768170 -32139400 - L2 LINE L2 -96 3217 3075 695 296 39 30 chr21 12768368 12768571 -32138999 + MIR SINE MIR 8 212 -50 1579 301 43 16 chr21 12768593 12769104 -32138466 - MLT1H1 LTR MaLR -30 525 1 21 0 0 0 chr21 12769850 12769871 -32137699 + AT_rich Low_complexity Low_complexity 1 21 0 323 265 77 61 chr21 12770753 12770934 -32136636 + MIR3 SINE MIR 4 187 -21 230 296 61 38 chr21 12772618 12772750 -32134820 - HAL1 LINE L1 -179 2328 2194 298 202 183 10 chr21 12772776 12772880 -32134690 - HAL1 LINE L1 -285 2222 2101 364 297 81 48 chr21 12772887 12773255 -32134315 - MLT1I LTR MaLR -1 408 24 2579 289 103 49 chr21 12773361 12775085 -32132485 - HAL1 LINE L1 -579 1928 113 390 233 42 69 chr21 12775145 12775334 -32132236 - L1MC5 LINE L1 -46 7915 7732 326 359 8 0 chr21 12775613 12775741 -32131829 - MER94 DNA DNA -5 129 1 38 0 0 0 chr21 12776524 12776562 -32131008 + AT_rich Low_complexity Low_complexity 1 38 0 1980 243 58 55 chr21 12776754 12777506 -32130064 + L1ME3A LINE L1 5411 6165 -5 189 282 0 0 chr21 12777773 12777812 -32129758 - MIR SINE MIR -133 75 37 5357 114 51 34 chr21 12777983 12778871 -32128699 + MER4D LTR ERV1 1 903 0 279 0 0 0 chr21 12779676 12779707 -32127863 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2947 171 19 76 chr21 12779864 12780597 -32126973 - LTR8 LTR ERV1 0 691 1 234 320 0 25 chr21 12781303 12781425 -32126145 + (TA)n Simple_repeat Simple_repeat 2 120 0 295 359 103 49 chr21 12781536 12782422 -32125148 - L2 LINE L2 -21 3251 2312 449 262 74 8 chr21 12782480 12782602 -32124968 + MER5B DNA MER1_type 1 130 -48 6124 95 10 9 chr21 12782608 12783509 -32124061 - L1PA12 LINE L1 0 6168 5267 367 349 16 16 chr21 12783595 12783724 -32123846 + MER5B DNA MER1_type 1 129 -49 408 175 0 0 chr21 12783725 12783805 -32123765 - L1MB7 LINE L1 -8 6176 6097 453 239 0 9 chr21 12783869 12783978 -32123592 - L1M4 LINE L1 -2027 4617 4510 * 2929 248 40 55 chr21 12783971 12784956 -32122614 - L1M4 LINE L1 -5557 985 16 357 372 91 26 chr21 12785037 12785456 -32122114 - L2 LINE L2 -1157 2157 1712 388 272 45 78 chr21 12785680 12785869 -32121701 + MIR SINE MIR 7 199 -63 335 364 45 0 chr21 12785892 12786024 -32121546 + MIR3 SINE MIR 60 197 -11 325 333 50 30 chr21 12788224 12788422 -32119148 + MIR3 SINE MIR 4 205 -3 33 0 0 0 chr21 12790183 12790216 -32117354 + AT_rich Low_complexity Low_complexity 1 33 0 186 340 75 0 chr21 12790524 12790618 -32116952 - MIR SINE MIR -66 196 96 739 191 53 33 chr21 12792068 12792220 -32115350 + MER45A DNA AcHobo 1 155 -23 263 120 40 40 chr21 12792817 12792892 -32114678 + (TTAA)n Simple_repeat Simple_repeat 2 76 0 242 356 113 9 chr21 12793084 12793199 -32114371 + L2 LINE L2 3145 3271 -1 1157 102 11 11 chr21 12793504 12793519 -32114051 + (GAAA)n Simple_repeat Simple_repeat 3 16 -337 2145 84 3 21 chr21 12793519 12793805 -32113765 + AluSp SINE Alu 1 281 -32 1157 102 11 11 chr21 12793805 12794141 -32113429 + (GAAA)n Simple_repeat Simple_repeat 16 353 0 1365 236 62 44 chr21 12794291 12794787 -32112783 - MLT1D LTR MaLR 0 505 1 230 239 0 60 chr21 12795465 12795532 -32112038 - L2 LINE L2 -1 3312 3250 246 174 0 0 chr21 12796464 12796510 -32111060 + CT-rich Low_complexity Low_complexity 5 50 0 272 143 6 6 chr21 12796627 12796648 -32110922 + Alu SINE Alu 256 257 -44 1647 78 0 23 chr21 12796648 12796865 -32110705 + AluSg SINE Alu 1 212 -98 272 143 6 6 chr21 12796865 12796905 -32110665 + Alu SINE Alu 256 295 -6 391 274 75 70 chr21 12796951 12797152 -32110418 - LTR33 LTR ERVL -16 505 304 871 74 0 0 chr21 12797486 12797594 -32109976 - AluSq/x SINE Alu -204 108 1 2174 123 3 3 chr21 12798956 12799266 -32108304 + AluSx SINE Alu 1 310 -2 215 256 318 0 chr21 12799586 12799715 -32107855 - MIR SINE MIR -14 248 79 446 353 102 49 chr21 12801812 12802776 -32104794 - L2 LINE L2 -12 3260 2246 28 0 0 0 chr21 12803372 12803400 -32104170 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr21 12805002 12805027 -32102543 + AT_rich Low_complexity Low_complexity 1 25 0 647 217 25 6 chr21 12805134 12805291 -32102279 + MER105 DNA DNA 44 203 -1 322 336 15 8 chr21 12805305 12805436 -32102134 - L3b LINE CR1 -343 1240 1109 21 0 0 0 chr21 12807881 12807902 -32099668 + AT_rich Low_complexity Low_complexity 1 21 0 784 109 9 0 chr21 12808824 12808934 -32098636 + MER34 LTR ERV1 1 111 -431 780 146 0 58 chr21 12808935 12809072 -32098498 - FLAM_C SINE Alu -12 131 3 2572 153 23 0 chr21 12809072 12809504 -32098066 + MER34 LTR ERV1 101 542 0 349 308 56 43 chr21 12809558 12809926 -32097644 - L1MC4a LINE L1 -1886 5922 5542 219 36 0 0 chr21 12810779 12810807 -32096763 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 351 0 0 0 chr21 12811242 12811281 -32096289 + (CA)n Simple_repeat Simple_repeat 2 40 0 5586 62 4 0 chr21 12811675 12812387 -32095183 + L1PA7 LINE L1 5440 6154 0 186 43 0 0 chr21 12813553 12813576 -32093994 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 191 240 115 39 chr21 12813955 12814059 -32093511 + MIR SINE MIR 40 151 -111 279 294 118 18 chr21 12814764 12814934 -32092636 + MIR SINE MIR 49 235 -27 208 229 0 14 chr21 12814957 12814981 -32092589 + (TTA)n Simple_repeat Simple_repeat 2 25 -45 1981 127 11 0 chr21 12814981 12815264 -32092306 + AluSx SINE Alu 2 287 -25 208 229 0 14 chr21 12815264 12815309 -32092261 + (TTA)n Simple_repeat Simple_repeat 25 70 0 205 205 0 0 chr21 12817156 12817195 -32090375 + A-rich Low_complexity Low_complexity 1 39 0 222 244 13 77 chr21 12817257 12817335 -32090235 + MIR SINE MIR 60 132 -76 1222 153 165 54 chr21 12818557 12818818 -32088752 + AluJo SINE Alu 1 290 -12 280 316 78 67 chr21 12818982 12819175 -32088395 - MIR SINE MIR -67 195 1 1546 203 162 58 chr21 12820724 12821256 -32086314 + MLT1E1 LTR MaLR 68 654 0 573 264 43 24 chr21 12821364 12821572 -32085998 + L1PA7 LINE L1 6 217 -6646 * 14512 192 26 14 chr21 12821548 12826515 -32081055 + L1PA7 LINE L1 1392 6454 -416 2161 88 48 0 chr21 12826515 12826810 -32080760 + AluSc SINE Alu 1 309 0 14512 192 26 14 chr21 12826810 12827228 -32080342 + L1PA7 LINE L1 6454 6866 -4 2625 42 7 0 chr21 12827525 12827832 -32079738 + AluY SINE Alu 1 309 -2 629 327 52 57 chr21 12831039 12831169 -32076401 - L2 LINE L2 0 3313 3184 246 81 0 0 chr21 12831169 12831206 -32076364 + (TG)n Simple_repeat Simple_repeat 2 38 0 629 327 52 57 chr21 12831206 12831603 -32075967 - L2 LINE L2 -129 3184 2791 1132 319 54 0 chr21 12831605 12831937 -32075633 + LTR16B LTR ERVL 1 350 -114 1329 331 73 46 chr21 12832055 12832930 -32074640 - L2 LINE L2 -593 2721 1823 2691 187 46 23 chr21 12833011 12834008 -32073562 + L1MB7 LINE L1 4836 5854 -330 2125 113 7 0 chr21 12834057 12834357 -32073213 - AluSx SINE Alu -9 303 2 21 95 0 0 chr21 12835467 12835530 -32072040 + AT_rich Low_complexity Low_complexity 1 63 0 410 171 0 6 chr21 12835585 12835702 -32071868 + MER5A DNA MER1_type 1 189 0 692 277 189 27 chr21 12835714 12836089 -32071481 + L2 LINE L2 2877 3312 -1 197 274 102 70 chr21 12836741 12836927 -32070643 + L2 LINE L2 3119 3310 -3 24 0 0 0 chr21 12837336 12837360 -32070210 + AT_rich Low_complexity Low_complexity 1 24 0 275 298 115 39 chr21 12837590 12837798 -32069772 + MIR SINE MIR 27 250 -12 218 206 32 16 chr21 12838031 12838094 -32069476 + (TA)n Simple_repeat Simple_repeat 1 64 0 2427 154 13 10 chr21 12838250 12838640 -32068930 + MER61B LTR ERV1 1 391 -34 32 0 0 0 chr21 12839138 12839170 -32068400 + AT_rich Low_complexity Low_complexity 1 32 0 1362 88 16 5 chr21 12839359 12839553 -32068017 + L1PA10 LINE L1 5973 6168 0 2595 190 43 38 chr21 12840190 12840791 -32066779 - MER6A DNA MER2_type 0 605 2 1054 249 64 17 chr21 12842184 12842530 -32065040 + L1MC5 LINE L1 5545 5906 -1902 1209 227 55 78 chr21 12842534 12843292 -32064278 + L1MC5 LINE L1 6923 7663 -298 357 196 61 54 chr21 12843303 12843451 -32064119 + L1MC5 LINE L1 7769 7917 -44 1916 129 0 11 chr21 12843526 12843835 -32063735 - AluSx SINE Alu 0 306 1 207 0 0 0 chr21 12845428 12845451 -32062119 + (A)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr21 12845651 12845696 -32061874 + AT_rich Low_complexity Low_complexity 1 45 0 397 304 19 12 chr21 12846516 12846677 -32060893 - MIR SINE MIR -15 247 86 264 399 21 31 chr21 12846743 12846936 -32060634 + L2 LINE L2 2863 3053 -219 2507 61 0 3 chr21 12847702 12848012 -32059558 + AluY SINE Alu 1 309 -2 298 292 95 0 chr21 12848284 12848421 -32059149 + MER117 DNA MER1_type 7 156 -41 32 43 0 0 chr21 12848631 12848677 -32058893 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr21 12849349 12849372 -32058198 + AT_rich Low_complexity Low_complexity 1 23 0 1728 148 14 41 chr21 12850569 12850884 -32056686 - AluJo SINE Alu 0 307 1 207 0 0 0 chr21 12852112 12852135 -32055435 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1292 39 13 0 chr21 12852184 12852339 -32055231 - AluY SINE Alu -11 300 144 309 380 25 10 chr21 12852384 12852584 -32054986 - MIR SINE MIR -58 204 2 187 372 44 26 chr21 12852599 12852712 -32054858 - L2 LINE L2 -210 3062 2948 310 284 23 11 chr21 12852755 12852843 -32054727 + MER5A DNA MER1_type 76 164 -25 284 130 0 0 chr21 12852844 12852890 -32054680 + MADE1 DNA Mariner 1 46 -34 1605 176 14 88 chr21 12853180 12853601 -32053969 + MLT1B LTR MaLR 1 390 0 778 297 204 13 chr21 12854563 12855202 -32052368 + L2 LINE L2 2531 3302 -11 521 271 14 29 chr21 12855289 12855429 -32052141 + MER5B DNA MER1_type 38 175 -3 273 303 34 11 chr21 12855499 12855588 -32051982 - MER5A DNA MER1_type -83 106 16 399 250 35 26 chr21 12856088 12856204 -32051366 + MIR SINE MIR 124 240 -22 10600 39 24 0 chr21 12856898 12858949 -32048621 + L1PA5 LINE L1 4078 6151 -3 1154 134 4 100 chr21 12859072 12859311 -32048259 - MER30 DNA MER1_type -13 217 2 296 273 0 0 chr21 12859329 12859395 -32048175 - L2 LINE L2 -1 3312 3247 935 211 29 10 chr21 12859463 12859667 -32047903 + AluJb SINE Alu 87 294 -18 213 87 87 22 chr21 12859667 12859713 -32047857 + GA-rich Low_complexity Low_complexity 1 49 0 310 339 60 18 chr21 12859979 12860147 -32047423 + MIR SINE MIR 77 251 -11 1346 159 61 43 chr21 12860320 12860543 -32047027 + AluJo SINE Alu 1 231 -81 207 0 0 0 chr21 12860543 12860566 -32047004 + (TTAGGG)n Simple_repeat Simple_repeat 4 26 0 1346 159 61 43 chr21 12860566 12860619 -32046951 + AluJo SINE Alu 231 282 -30 1812 169 0 3 chr21 12861721 12862016 -32045554 - AluJb SINE Alu -16 296 3 23 33 0 0 chr21 12862313 12862343 -32045227 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 12864329 12864351 -32043219 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 4 chr21 12864381 12864659 -32042911 - AluSg SINE Alu -16 294 18 25 0 0 0 chr21 12865405 12865430 -32042140 + AT_rich Low_complexity Low_complexity 1 25 0 509 274 112 10 chr21 12869356 12869553 -32038017 - MIR SINE MIR 0 262 46 1938 172 8 27 chr21 12869996 12870363 -32037207 + MLT1A1 LTR MaLR 6 365 0 324 259 164 45 chr21 12870647 12871049 -32036521 - HAL1 LINE L1 -89 2418 1969 661 205 43 78 chr21 12871309 12871567 -32036003 - HAL1 LINE L1 -884 1623 1375 488 239 99 48 chr21 12871588 12871860 -32035710 - HAL1 LINE L1 -1216 1291 1006 579 283 151 5 chr21 12871874 12872079 -32035491 + MIR SINE MIR 12 246 -16 465 273 56 30 chr21 12872095 12872326 -32035244 - HAL1 LINE L1 -1502 1005 769 1729 195 10 0 chr21 12872355 12872658 -32034912 - AluJo SINE Alu -1 311 6 260 309 12 0 chr21 12874106 12874190 -32033380 + (TA)n Simple_repeat Simple_repeat 1 85 0 395 317 154 19 chr21 12874841 12875049 -32032521 + MIR SINE MIR 21 256 -6 267 324 34 40 chr21 12875396 12875572 -32031998 + L2 LINE L2 2826 3000 -313 301 182 61 0 chr21 12875792 12875858 -32031712 + L2 LINE L2 3203 3272 0 1855 144 0 16 chr21 12876063 12876368 -32031202 + AluSx SINE Alu 1 300 -12 1293 207 17 24 chr21 12877178 12877473 -32030097 - AluJo SINE Alu -19 293 1 371 359 60 71 chr21 12877607 12877972 -32029598 - L2 LINE L2 -2 3270 2910 830 178 100 6 chr21 12877975 12878155 -32029415 + LTR8 LTR ERV1 1 197 -494 541 200 27 9 chr21 12878505 12878615 -32028955 - MLT1C LTR MaLR 0 467 356 * 1666 196 99 73 chr21 12878599 12879135 -32028435 + LTR8A LTR ERV1 178 727 0 1794 190 29 74 chr21 12879259 12879748 -32027822 + MLT1C LTR MaLR 1 467 0 196 75 25 25 chr21 12880196 12880236 -32027334 + (TA)n Simple_repeat Simple_repeat 1 40 0 354 285 118 14 chr21 12882068 12882212 -32025358 - MIR SINE MIR -70 192 34 2153 93 31 3 chr21 12882680 12882971 -32024599 + AluSx SINE Alu 1 299 -13 243 283 67 25 chr21 12883236 12883356 -32024214 - MIR SINE MIR -29 233 109 2102 134 0 0 chr21 12884213 12884505 -32023065 - AluSx SINE Alu -20 292 1 29 78 0 0 chr21 12885010 12885074 -32022496 + AT_rich Low_complexity Low_complexity 1 64 0 292 259 114 15 chr21 12885407 12885538 -32022032 + MIR SINE MIR 35 178 -84 269 253 132 11 chr21 12885662 12885753 -32021817 - MER5A DNA MER1_type -1 188 87 286 277 60 12 chr21 12886249 12886332 -32021238 - MIR3 SINE MIR -28 180 94 1563 190 10 20 chr21 12886677 12886977 -32020593 + AluJo SINE Alu 1 297 -15 192 296 7 45 chr21 12888331 12888479 -32019091 + L2 LINE L2 2542 2727 -587 201 301 169 24 chr21 12888790 12888956 -32018614 + L2 LINE L2 3124 3313 0 29 28 0 0 chr21 12889811 12889847 -32017723 + AT_rich Low_complexity Low_complexity 1 36 0 483 367 40 9 chr21 12889855 12890081 -32017489 - MIR SINE MIR 0 262 30 426 304 21 19 chr21 12890145 12890329 -32017241 + MIR SINE MIR 6 143 -65 223 315 27 0 chr21 12890570 12890643 -32016927 + MIR SINE MIR 80 154 -108 189 0 0 0 chr21 12891199 12891220 -32016350 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 297 365 68 14 chr21 12891397 12891545 -32016025 - MIR3 SINE MIR -32 176 21 216 97 0 0 chr21 12892811 12892842 -32014728 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2142 127 3 0 chr21 12894712 12894892 -32012678 - AluSg SINE Alu -1 309 126 486 49 0 0 chr21 12894892 12894953 -32012617 + (TA)n Simple_repeat Simple_repeat 1 61 0 2142 127 3 0 chr21 12894953 12895080 -32012490 - AluSg SINE Alu -184 126 1 1835 97 8 0 chr21 12896125 12896373 -32011197 + AluSg SINE Alu 56 305 -5 858 143 0 0 chr21 12897316 12897449 -32010121 - FLAM_C SINE Alu 0 133 1 278 359 0 26 chr21 12897569 12897686 -32009884 + L2 LINE L2 3158 3271 -1 283 358 48 41 chr21 12897723 12897991 -32009579 - L2 LINE L2 -191 3081 2812 341 344 56 8 chr21 12898679 12898804 -32008766 - MIR SINE MIR -112 150 20 718 214 19 169 chr21 12898852 12899014 -32008556 + MIR SINE MIR 1 97 -165 2469 58 0 6 chr21 12899014 12899327 -32008243 - AluY SINE Alu 0 311 1 718 214 19 169 chr21 12899327 12899472 -32008098 + MIR SINE MIR 97 262 0 23 0 0 0 chr21 12900499 12900522 -32007048 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 12903354 12903375 -32004195 + AT_rich Low_complexity Low_complexity 1 21 0 2354 103 0 0 chr21 12903652 12903962 -32003608 + AluSg SINE Alu 1 310 0 564 325 68 34 chr21 12904127 12904478 -32003092 - L2 LINE L2 0 3313 2951 235 364 131 10 chr21 12904480 12904678 -32002892 - L2 LINE L2 -277 3036 2815 801 317 139 29 chr21 12904759 12905384 -32002186 + L2 LINE L2 1609 2302 -1012 246 32 0 0 chr21 12905414 12905445 -32002125 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 6972 12 27 0 chr21 12905446 12906254 -32001316 - L1PA2 LINE L1 -5 6150 5321 386 338 93 24 chr21 12906263 12906553 -32001017 + L2 LINE L2 2348 2657 -657 461 300 67 17 chr21 12906853 12907033 -32000537 - MIR3 SINE MIR -1 207 19 255 148 98 0 chr21 12907206 12907267 -32000303 + L1MC4 LINE L1 6644 6710 -1332 1463 177 3 68 chr21 12907940 12908250 -31999320 - AluJo SINE Alu -14 298 9 27 0 0 0 chr21 12908811 12908838 -31998732 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 12909955 12909976 -31997594 + AT_rich Low_complexity Low_complexity 1 21 0 317 289 60 2 chr21 12910121 12910239 -31997331 + MIR3 SINE MIR 42 166 -42 333 347 93 7 chr21 12910357 12910507 -31997063 - MIR3 SINE MIR -9 199 37 188 241 19 19 chr21 12911930 12912038 -31995532 + (TA)n Simple_repeat Simple_repeat 2 109 0 841 181 28 40 chr21 12912428 12912495 -31995075 + MLT1A1 LTR MaLR 1 67 -298 2306 181 24 2 chr21 12912495 12912914 -31994656 - MSTA LTR MaLR 0 428 1 841 181 28 40 chr21 12912914 12913023 -31994547 + MLT1A1 LTR MaLR 67 175 -190 788 155 16 0 chr21 12913031 12913160 -31994410 + MLT1A1 LTR MaLR 235 365 0 320 273 71 10 chr21 12913268 12913367 -31994203 - MIR SINE MIR -71 191 87 2198 231 30 27 chr21 12914089 12914652 -31992918 + MLT1F1 LTR MaLR 3 567 0 523 281 56 82 chr21 12915299 12915691 -31991879 - MLT1J LTR MaLR -19 492 111 1907 151 77 33 chr21 12916770 12916839 -31990731 + MSTB1 LTR MaLR 2 67 -365 1966 146 26 32 chr21 12916839 12917216 -31990354 + THE1C LTR MaLR 1 375 0 1907 151 77 33 chr21 12917216 12917536 -31990034 + MSTB1 LTR MaLR 67 408 -24 239 111 0 0 chr21 12917564 12917600 -31989970 + MSTB1 LTR MaLR 422 457 0 245 349 53 8 chr21 12917659 12917791 -31989779 - MER5A DNA MER1_type -50 139 2 243 241 19 0 chr21 12918540 12918594 -31988976 + GA-rich Low_complexity Low_complexity 1 55 0 417 252 9 17 chr21 12918712 12918827 -31988743 - MIR SINE MIR -121 141 28 256 325 95 16 chr21 12919986 12920112 -31987458 + MIR3 SINE MIR 69 204 -4 318 321 0 0 chr21 12920353 12920434 -31987136 - MIR3 SINE MIR -13 195 115 279 324 29 70 chr21 12921401 12921645 -31985925 - MER102a DNA MER1_type -5 325 92 1096 258 54 92 chr21 12921914 12922111 -31985459 + MLT1G LTR MaLR 14 217 -373 574 183 30 15 chr21 12922111 12922242 -31985328 + FLAM_A SINE Alu 1 133 0 1096 258 54 92 chr21 12922242 12922678 -31984892 + MLT1G LTR MaLR 217 590 0 2347 50 4 0 chr21 12923483 12923813 -31983757 - AluY SINE Alu 0 333 3 22 56 0 0 chr21 12924024 12924060 -31983510 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr21 12924199 12924260 -31983310 + AT_rich Low_complexity Low_complexity 1 61 0 3894 199 82 4 chr21 12925712 12926476 -31981094 + L1M1 LINE L1 12 835 -6730 21 36 0 0 chr21 12926827 12926855 -31980715 + AT_rich Low_complexity Low_complexity 1 28 0 237 132 0 0 chr21 12926951 12926989 -31980581 + (TA)n Simple_repeat Simple_repeat 2 39 0 4968 155 63 42 chr21 12927383 12928432 -31979138 + MER11C LTR ERVK 1 1071 0 1026 198 6 0 chr21 12928613 12928795 -31978775 - AluJo SINE Alu -24 288 106 2117 102 3 7 chr21 12929628 12929913 -31977657 + AluSc SINE Alu 1 284 -25 384 253 32 32 chr21 12930855 12931009 -31976561 + L1MC5 LINE L1 7075 7228 -733 207 250 0 39 chr21 12931313 12931365 -31976205 + MIR SINE MIR 200 249 -13 23 0 0 0 chr21 12931471 12931494 -31976076 + AT_rich Low_complexity Low_complexity 1 23 0 522 226 13 13 chr21 12931527 12931682 -31975888 + L1MC5 LINE L1 7315 7469 -492 492 244 82 53 chr21 12931721 12932077 -31975493 + L1MC5 LINE L1 7548 7913 -48 201 254 0 75 chr21 12932365 12932432 -31975138 + MIR SINE MIR 200 261 -1 225 0 0 0 chr21 12933539 12933564 -31974006 + (A)n Simple_repeat Simple_repeat 1 25 0 301 75 38 0 chr21 12933695 12933748 -31973822 + A-rich Low_complexity Low_complexity 1 55 0 462 143 0 0 chr21 12936326 12936403 -31971167 + (TG)n Simple_repeat Simple_repeat 2 78 0 304 143 0 54 chr21 12937238 12937294 -31970276 - L2 LINE L2 0 3313 3261 1695 199 193 63 chr21 12937294 12937867 -31969703 - MER39 LTR ERV1 0 707 45 1743 150 72 31 chr21 12937867 12938227 -31969343 + THE1C LTR MaLR 1 375 0 1695 199 193 63 chr21 12938227 12938275 -31969295 - MER39 LTR ERV1 -662 45 5 41146 66 4 1 chr21 12938850 12944983 -31962587 + L1PA5 LINE L1 3 6152 -2 1345 139 63 0 chr21 12945862 12946114 -31961456 + L1MA5A LINE L1 6024 6291 -6 29 28 0 0 chr21 12946118 12946154 -31961416 + AT_rich Low_complexity Low_complexity 1 36 0 682 225 5 80 chr21 12946521 12946708 -31960862 - MIR SINE MIR -33 229 57 367 320 32 13 chr21 12948936 12949092 -31958478 - MIR SINE MIR -16 246 88 186 71 0 0 chr21 12949096 12949124 -31958446 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1557 111 5 0 chr21 12949150 12949357 -31958213 - AluSg SINE Alu -98 212 5 259 148 16 16 chr21 12949613 12949674 -31957896 + GA-rich Low_complexity Low_complexity 4 64 0 1430 267 111 30 chr21 12950293 12950791 -31956779 - MLT1E LTR MaLR -19 574 36 549 73 0 49 chr21 12950791 12950873 -31956697 + MLT2D LTR ERVL 1 78 -336 180 0 0 0 chr21 12950873 12950893 -31956677 + (TC)n Simple_repeat Simple_repeat 2 21 0 216 67 0 0 chr21 12950893 12950923 -31956647 + (CA)n Simple_repeat Simple_repeat 2 31 0 330 89 0 0 chr21 12950927 12950972 -31956598 + MLT2D LTR ERVL 370 414 0 344 357 57 0 chr21 12951091 12951231 -31956339 - MIR3 SINE MIR -18 190 43 255 246 18 0 chr21 12951514 12951571 -31955999 - tRNA-Ile-ATT tRNA tRNA -7 70 13 33 43 0 0 chr21 12951712 12951759 -31955811 + AT_rich Low_complexity Low_complexity 1 47 0 6249 95 5 25 chr21 12951764 12953061 -31954509 + L1PA8 LINE L1 4897 6172 0 198 0 0 0 chr21 12953520 12953542 -31954028 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1717 57 70 4 chr21 12953542 12953771 -31953799 - L1PA6 LINE L1 -18 6136 5893 202 319 0 0 chr21 12953783 12953852 -31953718 - MIR SINE MIR -109 153 85 1983 102 3 71 chr21 12954258 12954581 -31952989 + AluY SINE Alu 1 301 -10 397 221 0 35 chr21 12954772 12954858 -31952712 + Charlie5 DNA MER1_type 1 83 -2529 190 0 0 62 chr21 12954858 12954890 -31952680 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 967 182 60 30 chr21 12954934 12955203 -31952367 + Charlie5 DNA MER1_type 2348 2624 0 180 346 111 0 chr21 12955222 12955303 -31952267 - MER5B DNA MER1_type -88 90 1 555 211 50 11 chr21 12955939 12956119 -31951451 - MER33 DNA MER1_type -111 213 27 563 231 41 18 chr21 12956138 12956307 -31951263 - MER58C DNA MER1_type 0 215 43 342 320 9 12 chr21 12956454 12956596 -31950974 - MIR SINE MIR -62 146 13 181 159 0 91 chr21 12956657 12956701 -31950869 - L2 LINE L2 0 3313 3274 2104 196 10 13 chr21 12956914 12957311 -31950259 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr21 12958356 12958378 -31949192 + AT_rich Low_complexity Low_complexity 1 22 0 206 272 277 16 chr21 12959159 12959343 -31948227 + MIR SINE MIR 31 262 0 2394 157 48 0 chr21 12959497 12959910 -31947660 - Tigger2a DNA MER2_type -1 433 1 411 116 29 14 chr21 12960222 12960291 -31947279 - MER63 DNA MER1_type -314 747 678 318 293 171 6 chr21 12960344 12960525 -31947045 + MIR SINE MIR 52 262 0 19860 162 24 4 chr21 12961297 12964888 -31942682 + L1MA1 LINE L1 16 3675 -3890 8558 26 0 0 chr21 12964894 12965894 -31941676 - L1PA3 LINE L1 -1204 4942 3943 7615 25 0 3 chr21 12965894 12967134 -31940436 + L1PA3 LINE L1 4919 6155 0 13798 165 30 16 chr21 12967168 12967185 -31940385 + L1MA1 LINE L1 3672 3687 -4034 1888 171 0 0 chr21 12967185 12967470 -31940100 + AluSx SINE Alu 1 288 -24 405 0 0 0 chr21 12967470 12967515 -31940055 + (CA)n Simple_repeat Simple_repeat 2 46 0 1888 171 0 0 chr21 12967515 12967528 -31940042 + AluSx SINE Alu 287 299 -13 13798 165 30 16 chr21 12967528 12971497 -31936073 + L1MA1 LINE L1 3687 7717 -4 29 70 0 0 chr21 12971643 12971700 -31935870 + AT_rich Low_complexity Low_complexity 1 57 0 288 130 0 0 chr21 12972548 12972594 -31934976 + (GAAA)n Simple_repeat Simple_repeat 1 46 0 403 280 72 93 chr21 12972600 12973071 -31934499 + L1MEd LINE L1 696 1156 -4963 360 308 116 11 chr21 12973088 12973338 -31934232 + L1M4 LINE L1 3689 3980 -2166 409 281 60 22 chr21 12973660 12973927 -31933643 + L1M4 LINE L1 4383 4659 -1487 4229 183 23 33 chr21 12976959 12977842 -31929728 - L1MB3 LINE L1 -2 6181 5309 328 87 0 0 chr21 12977842 12977888 -31929682 + Alu SINE Alu 249 294 -7 2149 210 40 21 chr21 12977901 12978473 -31929097 - L1MB3 LINE L1 -836 5310 4728 417 261 36 9 chr21 12978552 12978663 -31928907 - MIR SINE MIR -129 133 20 234 246 16 0 chr21 12978682 12978743 -31928827 + MIR SINE MIR 82 143 -119 32 0 0 0 chr21 12978872 12978904 -31928666 + AT_rich Low_complexity Low_complexity 1 32 0 2617 141 52 12 chr21 12978906 12979402 -31928168 - L1MA8 LINE L1 -4 6287 5772 1039 128 0 0 chr21 12979402 12979551 -31928019 + L1MA8 LINE L1 5624 5772 -519 246 239 80 11 chr21 12979734 12979822 -31927748 - MLT1L LTR MaLR -2 613 520 267 236 0 0 chr21 12979904 12979959 -31927611 - MLT1L LTR MaLR -221 394 340 352 257 63 48 chr21 12980251 12980457 -31927113 - L1MC5 LINE L1 -41 7920 7712 288 366 16 8 chr21 12980535 12980658 -31926912 + MLT1H LTR MaLR 72 195 -354 1287 142 8 4 chr21 12980676 12980916 -31926654 - L1MA7 LINE L1 -1 6290 6050 720 229 113 51 chr21 12980931 12981279 -31926291 + MLT1G1 LTR MaLR 142 646 -8 214 208 0 21 chr21 12981325 12981373 -31926197 + GA-rich Low_complexity Low_complexity 2 48 0 259 261 159 19 chr21 12981392 12981549 -31926021 - L1MC4 LINE L1 -366 7676 7498 2269 94 0 16 chr21 12981804 12982111 -31925459 - AluSg SINE Alu -8 302 1 274 207 11 58 chr21 12982146 12982233 -31925337 - L1MC5 LINE L1 -818 7143 7061 1814 153 52 30 chr21 12982269 12982636 -31924934 - THE1C LTR MaLR 0 375 1 232 294 0 0 chr21 12982676 12982727 -31924843 + polypyrimidine Low_complexity Low_complexity 2 52 0 460 283 62 26 chr21 12982745 12982971 -31924599 - L1MC4 LINE L1 -977 7065 6832 320 298 92 23 chr21 12983655 12983786 -31923784 + MIR SINE MIR 10 149 -113 207 114 0 0 chr21 12984782 12984817 -31922753 + (GA)n Simple_repeat Simple_repeat 2 36 0 450 0 0 0 chr21 12985020 12985070 -31922500 + (TA)n Simple_repeat Simple_repeat 2 51 0 5233 103 4 21 chr21 12985081 12985884 -31921686 - L1P LINE L1 -956 5190 4402 5068 119 12 1 chr21 12985882 12986652 -31920918 + L1P LINE L1 3626 4403 -1743 * 4168 80 5 7 chr21 12986662 12987235 -31920335 - L1PA7 LINE L1 -2 6152 5581 218 224 60 30 chr21 12987359 12987426 -31920144 + MIR3 SINE MIR 111 179 -29 2336 112 19 25 chr21 12987804 12988170 -31919400 + THE1B LTR MaLR 1 364 0 1246 244 97 31 chr21 12988710 12989193 -31918377 - L1ME3 LINE L1 0 6162 5648 240 289 0 0 chr21 12989204 12989294 -31918276 - L1MC4 LINE L1 -1339 6703 6614 235 281 0 0 chr21 12989253 12989342 -31918228 + L1MC4 LINE L1 6615 6703 -1339 * 236 143 0 0 chr21 12989314 12989363 -31918207 - L1MC4 LINE L1 -1339 6703 6655 408 324 92 0 chr21 12989402 12989575 -31917995 - L1ME3 LINE L1 -529 5637 5449 1515 283 75 10 chr21 12989594 12990287 -31917283 - L1ME3 LINE L1 -745 5401 4664 278 362 68 18 chr21 12990301 12990464 -31917106 + MIR3 SINE MIR 23 193 -15 231 311 146 0 chr21 12991219 12991322 -31916248 - MIR SINE MIR -60 202 85 296 363 0 0 chr21 12991991 12992082 -31915488 - MIR SINE MIR -126 136 46 276 309 2 0 chr21 12992088 12992163 -31915407 - MIR SINE MIR -91 117 42 270 299 93 0 chr21 12992993 12993100 -31914470 + MIR3 SINE MIR 68 184 -24 391 350 96 39 chr21 12994992 12995452 -31912118 + L2 LINE L2 1634 2119 -1195 511 309 184 3 chr21 12995685 12995967 -31911603 - LTR16C LTR ERVL -3 488 156 191 320 50 10 chr21 12996274 12996374 -31911196 + L2 LINE L2 2958 3061 -211 368 325 19 13 chr21 12996647 12996801 -31910769 - Tigger8 DNA MER2_type -23 643 489 2210 128 28 11 chr21 12997337 12997695 -31909875 - THE1B LTR MaLR 0 364 1 510 200 144 31 chr21 12997855 12998015 -31909555 + MER5B DNA MER1_type 1 178 0 671 218 30 79 chr21 12998017 12998182 -31909388 + MER5A DNA MER1_type 29 185 -4 464 331 26 9 chr21 12998346 12998566 -31909004 + MIR SINE MIR 34 256 -6 2670 80 19 3 chr21 12998983 12999358 -31908212 + L1PA8 LINE L1 5791 6171 -1 26 30 0 0 chr21 12999492 12999525 -31908045 + AT_rich Low_complexity Low_complexity 1 33 0 214 161 0 48 chr21 13000867 13000929 -31906641 + GA-rich Low_complexity Low_complexity 3 61 0 1671 192 72 3 chr21 13000929 13001263 -31906307 + MLT1A1 LTR MaLR 1 357 -8 625 182 11 17 chr21 13001298 13001474 -31906096 + GA-rich Low_complexity Low_complexity 4 178 0 2102 131 0 13 chr21 13001487 13001792 -31905778 - AluSx SINE Alu -11 301 1 1882 106 64 0 chr21 13002426 13002690 -31904880 - AluSq SINE Alu -25 288 8 373 350 52 75 chr21 13002713 13003179 -31904391 + L2 LINE L2 2808 3262 -10 2130 101 0 4 chr21 13003710 13003988 -31903582 - AluSc SINE Alu -16 293 17 466 227 187 44 chr21 13004616 13004819 -31902751 + MIR SINE MIR 6 237 -25 182 323 16 0 chr21 13004787 13004849 -31902721 + L2 LINE L2 3210 3272 0 * 305 373 92 7 chr21 13005032 13005185 -31902385 - MIR3 SINE MIR -23 185 20 195 207 224 0 chr21 13005589 13005647 -31901923 + L2 LINE L2 3187 3257 -15 300 255 156 43 chr21 13005671 13005812 -31901758 - MER5A DNA MER1_type 0 189 33 2581 103 14 0 chr21 13007053 13007411 -31900159 - THE1B LTR MaLR 0 364 2 189 0 0 0 chr21 13009428 13009449 -31898121 + (CA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr21 13010482 13010506 -31897064 + AT_rich Low_complexity Low_complexity 1 24 0 1645 168 27 20 chr21 13010506 13010804 -31896766 - AluJb SINE Alu -11 301 2 1786 48 0 5 chr21 13010807 13011017 -31896553 - AluY SINE Alu -17 294 86 315 0 0 0 chr21 13011656 13011691 -31895879 + (CA)n Simple_repeat Simple_repeat 2 36 0 1741 112 4 0 chr21 13012214 13012446 -31895124 + AluSq SINE Alu 16 248 -65 234 347 20 10 chr21 13012996 13013094 -31894476 + L2 LINE L2 2987 3085 -187 404 254 35 26 chr21 13013289 13013403 -31894167 - MIR SINE MIR -95 167 53 554 168 0 0 chr21 13014449 13014542 -31893028 + MLT1A1 LTR MaLR 1 93 -272 392 92 0 0 chr21 13014542 13014604 -31892966 - MLT2A1 LTR ERVL 0 444 336 337 121 64 23 chr21 13014618 13014791 -31892779 + (TA)n Simple_repeat Simple_repeat 1 180 0 198 0 0 0 chr21 13014858 13014880 -31892690 + (TA)n Simple_repeat Simple_repeat 2 23 0 3118 84 0 0 chr21 13014880 13015284 -31892286 - MLT2A1 LTR ERVL -40 404 1 984 234 61 19 chr21 13015284 13015545 -31892025 + MLT1A1 LTR MaLR 89 360 -5 1319 265 73 2 chr21 13016132 13016550 -31891020 - MER110 LTR ERV1 0 491 1 486 276 6 31 chr21 13017512 13017675 -31889895 + MER117 DNA MER1_type 35 193 -4 749 284 31 25 chr21 13017998 13018315 -31889255 + MER110 LTR ERV1 166 484 -7 365 313 35 21 chr21 13018574 13018718 -31888852 - MER5A DNA MER1_type -1 188 43 243 0 0 0 chr21 13019566 13019593 -31887977 + (TG)n Simple_repeat Simple_repeat 2 28 0 192 111 0 0 chr21 13020222 13020258 -31887312 + (T)n Simple_repeat Simple_repeat 1 36 0 355 279 202 8 chr21 13021093 13021222 -31886348 + MER5A DNA MER1_type 32 185 -4 2269 93 0 6 chr21 13021501 13021812 -31885758 - AluY SINE Alu -2 309 1 1771 198 8 76 chr21 13022287 13022786 -31884784 - MER31B LTR ERV1 -1 465 1 222 317 138 38 chr21 13022823 13023063 -31884507 + L2 LINE L2 2608 2871 -443 238 355 75 0 chr21 13023562 13023655 -31883915 - L2 LINE L2 -4 3309 3210 212 294 59 0 chr21 13023828 13023896 -31883674 - MER5A DNA MER1_type -114 75 4 1858 135 72 26 chr21 13025336 13025684 -31881886 - THE1B LTR MaLR 0 364 1 551 346 21 13 chr21 13027969 13028203 -31879367 - L3b LINE CR1 -244 1339 1104 2194 74 51 3 chr21 13028285 13028581 -31878989 - AluY SINE Alu -1 310 1 1892 269 55 53 chr21 13030187 13031199 -31876371 + L1MEc LINE L1 1458 2471 -3925 2528 290 55 8 chr21 13031459 13032648 -31874922 - L1ME3A LINE L1 -11 6159 4862 276 236 126 16 chr21 13032873 13033000 -31874570 - L1ME4a LINE L1 -18 6103 5963 814 288 21 64 chr21 13033122 13033449 -31874121 + L1MDb LINE L1 5 317 -6092 4442 220 92 36 chr21 13033615 13035099 -31872471 + L1MDb LINE L1 660 2060 -4346 1784 182 0 19 chr21 13035099 13035417 -31872153 + AluJb SINE Alu 1 312 0 4442 220 92 36 chr21 13035417 13035439 -31872131 + L1MDb LINE L1 2060 2079 -4327 1354 204 25 83 chr21 13035439 13035836 -31871734 - MLT1A2 LTR MaLR 0 374 1 4442 220 92 36 chr21 13035836 13035947 -31871623 + L1MDb LINE L1 2079 2182 -4224 225 0 0 0 chr21 13035947 13035972 -31871598 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4442 220 92 36 chr21 13035972 13036157 -31871413 + L1MDb LINE L1 2182 2564 -3842 195 100 0 0 chr21 13037521 13037551 -31870019 + (CAATT)n Simple_repeat Simple_repeat 4 33 0 220 155 17 17 chr21 13037695 13037753 -31869817 + CT-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr21 13039749 13039770 -31867800 + AT_rich Low_complexity Low_complexity 1 21 0 4521 56 2 2 chr21 13039770 13040338 -31867232 - L1PA8 LINE L1 -9 6163 5596 1555 137 44 0 chr21 13041151 13041377 -31866193 + AluSx SINE Alu 1 236 -76 212 125 42 0 chr21 13041661 13041709 -31865861 + A-rich Low_complexity Low_complexity 4 53 0 2101 118 0 10 chr21 13041818 13042122 -31865448 + AluSc SINE Alu 1 301 -8 321 267 9 26 chr21 13042259 13042375 -31865195 - MLT1J LTR MaLR 0 511 398 452 99 0 0 chr21 13042624 13042695 -31864875 - L1MA3 LINE L1 0 6305 6235 231 186 58 0 chr21 13043011 13043167 -31864403 + (TA)n Simple_repeat Simple_repeat 1 165 0 954 135 0 0 chr21 13043232 13043365 -31864205 + AluJo SINE Alu 2 134 -178 826 199 22 167 chr21 13043410 13043902 -31863668 + L1MC5 LINE L1 6755 7175 -786 690 224 110 26 chr21 13043932 13044178 -31863392 + L1MC5 LINE L1 7603 7876 -85 467 110 41 0 chr21 13044178 13044251 -31863319 - MADE1 DNA Mariner 0 80 5 690 224 110 26 chr21 13044251 13044276 -31863294 + L1MC5 LINE L1 7876 7897 -64 917 224 37 113 chr21 13044295 13044729 -31862841 - LTR37A LTR ERV1 0 426 26 2291 192 47 16 chr21 13044786 13045276 -31862294 + MLT1D LTR MaLR 1 505 0 1230 284 58 52 chr21 13045648 13046323 -31861247 - MER31-int LTR ERV1 -875 4061 3383 260 222 0 0 chr21 13046376 13046430 -31861140 - MER58A DNA MER1_type -9 215 162 1404 205 31 0 chr21 13046430 13046689 -31860881 + AluJo SINE Alu 1 267 -45 566 219 65 47 chr21 13046706 13046875 -31860695 - MER58A DNA MER1_type -52 172 1 219 293 122 24 chr21 13047367 13047449 -31860121 - MER5B DNA MER1_type -87 91 2 1652 228 52 38 chr21 13047487 13047934 -31859636 - LTR40c LTR ERVL -12 453 1 591 235 39 88 chr21 13048123 13048408 -31859162 - MER31-int LTR ERV1 -1870 3066 2796 2151 139 0 0 chr21 13048613 13048922 -31858648 + AluSx SINE Alu 1 309 -3 2466 72 0 7 chr21 13049222 13049529 -31858041 - AluY SINE Alu -6 305 1 558 216 35 35 chr21 13049639 13049810 -31857760 + Charlie1 DNA MER1_type 2551 2721 -40 1798 168 6 25 chr21 13050062 13050378 -31857192 - AluJo SINE Alu 0 312 3 287 218 61 61 chr21 13050650 13050797 -31856773 - MER31-int LTR ERV1 -3488 1448 1302 2491 76 0 0 chr21 13050979 13051281 -31856289 - AluY SINE Alu -9 302 1 324 171 0 18 chr21 13051879 13051954 -31855616 - LTR37A LTR ERV1 0 426 361 844 189 52 0 chr21 13052161 13052314 -31855256 - MER3 DNA MER1_type -2 207 47 1850 177 85 22 chr21 13052650 13053052 -31854518 + MLT1C LTR MaLR 1 427 -40 899 224 35 51 chr21 13053050 13053362 -31854208 - LTR37A LTR ERV1 -42 384 78 * 497 227 85 44 chr21 13053801 13053974 -31853596 - MLT1J2 LTR MaLR -8 438 267 254 255 51 10 chr21 13054074 13054172 -31853398 - MLT1J1 LTR MaLR -331 115 14 349 303 14 14 chr21 13055527 13055755 -31851815 + L1ME3 LINE L1 5720 5947 -223 3521 66 2 0 chr21 13056149 13056601 -31850969 - L1PA7 LINE L1 -12 6142 5690 249 291 63 0 chr21 13056811 13056890 -31850680 + L2 LINE L2 3180 3263 -50 225 225 84 14 chr21 13057662 13057733 -31849837 + MIR SINE MIR 178 253 -9 32 43 0 0 chr21 13057755 13057801 -31849769 + AT_rich Low_complexity Low_complexity 1 46 0 269 319 151 6 chr21 13058219 13058385 -31849185 + MIR3 SINE MIR 17 206 -2 22 0 0 0 chr21 13058487 13058509 -31849061 + AT_rich Low_complexity Low_complexity 1 22 0 308 273 189 7 chr21 13059065 13059208 -31848362 + MER5A DNA MER1_type 21 189 0 763 218 72 104 chr21 13061301 13061800 -31845770 + L1M1 LINE L1 3142 3624 -3941 2115 106 3 3 chr21 13061829 13062145 -31845425 + AluSc SINE Alu 1 316 0 1635 146 175 26 chr21 13062149 13062492 -31845078 - MSTA LTR MaLR -34 394 1 8897 153 30 30 chr21 13062492 13064071 -31843499 - MSTA-int LTR MaLR 0 1580 3 2063 136 121 23 chr21 13064073 13064463 -31843107 - MSTA LTR MaLR 0 428 1 733 271 55 30 chr21 13064711 13064788 -31842782 + MIR SINE MIR 8 82 -180 1682 191 50 19 chr21 13064788 13065166 -31842404 - MLT1B LTR MaLR 0 390 1 733 271 55 30 chr21 13065166 13065324 -31842246 + MIR SINE MIR 82 249 -13 2134 134 3 0 chr21 13065795 13066100 -31841470 + AluSq SINE Alu 1 306 -7 1122 227 59 0 chr21 13066854 13067140 -31840430 + L1MA4 LINE L1 5993 6295 -5 223 240 0 0 chr21 13068122 13068172 -31839398 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 224 327 139 0 chr21 13068741 13068842 -31838728 + MIR SINE MIR 20 134 -74 * 511 343 137 27 chr21 13068826 13069361 -31838209 + L2 LINE L2 2651 3243 -70 428 209 18 0 chr21 13069408 13069518 -31838052 + GA-rich Low_complexity Low_complexity 2 113 0 637 329 46 21 chr21 13070841 13071240 -31836330 + L1M3c LINE L1 17 920 -5211 328 326 89 73 chr21 13071259 13071695 -31835875 + L1M3d LINE L1 626 1068 -5235 2946 252 58 21 chr21 13071839 13072915 -31834655 + L1MB1 LINE L1 801 1836 -4546 1934 208 3 3 chr21 13072915 13073280 -31834290 + MLT1A1 LTR MaLR 1 365 0 2946 252 58 21 chr21 13073280 13074530 -31833040 + L1MB1 LINE L1 1836 3215 -3167 2745 200 46 9 chr21 13074525 13074971 -31832599 + L1MB1 LINE L1 4020 4501 -1881 * 225 65 0 0 chr21 13074971 13075002 -31832568 + (CA)n Simple_repeat Simple_repeat 2 32 0 2745 200 46 9 chr21 13075002 13075225 -31832345 + L1MB1 LINE L1 4501 4714 -1668 204 40 0 0 chr21 13075225 13075250 -31832320 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 121 0 0 chr21 13076657 13076690 -31830880 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3807 180 47 26 chr21 13076915 13078157 -31829413 + L1MB1 LINE L1 4701 5992 -412 2166 75 3 39 chr21 13078157 13078464 -31829106 + AluY SINE Alu 1 296 -15 3807 180 47 26 chr21 13078464 13078887 -31828683 + L1MB1 LINE L1 5992 6404 0 282 324 131 12 chr21 13080448 13080692 -31826878 + L2 LINE L2 1306 1578 -1736 383 212 71 10 chr21 13080705 13080804 -31826766 - L2 LINE L2 -17 3296 3192 268 339 183 3 chr21 13081086 13081375 -31826195 + L2 LINE L2 1954 2294 -1020 578 288 67 15 chr21 13081542 13081849 -31825721 - MLT1J1 LTR MaLR -73 373 62 2310 166 57 5 chr21 13082187 13082590 -31824980 + MSTB LTR MaLR 2 425 -1 25 65 0 0 chr21 13082608 13082654 -31824916 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr21 13083274 13083309 -31824261 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 316 82 53 chr21 13083352 13083523 -31824047 + L2 LINE L2 2935 3110 -162 242 296 49 12 chr21 13083576 13083657 -31823913 + L2 LINE L2 3227 3310 -3 570 277 76 72 chr21 13084478 13084897 -31822673 - L2 LINE L2 -63 3250 2830 363 157 0 0 chr21 13086142 13086212 -31821358 + (CA)n Simple_repeat Simple_repeat 2 71 0 2064 136 7 0 chr21 13086367 13086668 -31820902 + AluSq SINE Alu 2 304 -9 238 31 0 0 chr21 13087550 13087582 -31819988 - HSMAR1 DNA Mariner -1255 32 1 334 287 23 11 chr21 13087988 13088075 -31819495 + MER5A DNA MER1_type 2 89 -100 533 233 14 10 chr21 13088131 13088252 -31819318 + MER5A DNA MER1_type 54 189 0 1780 200 189 44 chr21 13088608 13089154 -31818416 + MLT1E2 LTR MaLR 1 625 -1 2127 161 23 8 chr21 13089775 13090159 -31817411 - MLT1B LTR MaLR 0 390 1 613 301 32 0 chr21 13090621 13090807 -31816763 - MIR SINE MIR -11 251 60 822 217 57 12 chr21 13091686 13091930 -31815640 + L1MEc LINE L1 1610 1864 -4532 1541 252 96 26 chr21 13093195 13094131 -31813439 + L1MEc LINE L1 1850 2837 -3378 515 153 31 0 chr21 13094167 13094265 -31813305 - L1MB4 LINE L1 -1 6179 6079 323 293 12 60 chr21 13094336 13094503 -31813067 + L1MEc LINE L1 3240 3398 -2817 1290 269 23 52 chr21 13094503 13095229 -31812341 + L1ME1 LINE L1 2892 3596 -2619 980 240 86 103 chr21 13095257 13096056 -31811514 + L1ME1 LINE L1 3863 4648 -1567 1116 123 0 18 chr21 13096060 13096230 -31811340 + THE1C LTR MaLR 1 167 -208 448 125 0 0 chr21 13096231 13096303 -31811267 - Alu SINE Alu -6 306 235 1478 110 28 5 chr21 13096303 13096521 -31811049 + THE1C LTR MaLR 153 375 0 37932 81 10 9 chr21 13096606 13098006 -31809564 + L1PA6 LINE L1 11 1408 -4765 205 29 59 0 chr21 13098006 13098040 -31809530 + (AAATG)n Simple_repeat Simple_repeat 5 40 0 37932 81 10 9 chr21 13098040 13102794 -31804776 + L1PA6 LINE L1 1408 6173 0 2737 219 71 37 chr21 13102908 13104221 -31803349 + L1ME1 LINE L1 4858 6231 -4 249 236 60 126 chr21 13105244 13105426 -31802144 - MLT1I LTR MaLR -19 390 221 485 267 80 27 chr21 13106601 13106751 -31800819 + MLT1F1 LTR MaLR 1 158 -384 2304 91 0 0 chr21 13106761 13107057 -31800513 + AluY SINE Alu 1 296 -15 1305 206 67 103 chr21 13107069 13107505 -31800065 + MLT1F1 LTR MaLR 148 567 0 209 57 29 0 chr21 13107671 13107706 -31799864 + (TA)n Simple_repeat Simple_repeat 1 36 0 2328 151 16 3 chr21 13107713 13108078 -31799492 - THE1C LTR MaLR -5 370 1 1723 193 10 13 chr21 13108342 13108653 -31798917 - AluJo SINE Alu -2 310 1 1977 147 0 0 chr21 13109142 13109428 -31798142 - AluSx SINE Alu -24 288 3 311 277 59 10 chr21 13109453 13109554 -31798016 - MIR SINE MIR -156 106 1 1807 165 99 6 chr21 13109655 13109989 -31797581 + MLT1A1 LTR MaLR 1 365 0 919 271 99 43 chr21 13109991 13110363 -31797207 + MSTD LTR MaLR 1 393 -3 214 255 0 0 chr21 13110383 13110430 -31797140 + (ATG)n Simple_repeat Simple_repeat 2 48 0 326 277 69 46 chr21 13110440 13110570 -31797000 - MIR SINE MIR -17 245 113 489 303 85 0 chr21 13111881 13112046 -31795524 - MIR SINE MIR -29 233 55 717 196 94 0 chr21 13112754 13112862 -31794708 + AluJo SINE Alu 12 137 -175 450 0 0 0 chr21 13112862 13112912 -31794658 + (TAA)n Simple_repeat Simple_repeat 2 51 0 717 196 94 0 chr21 13112912 13112941 -31794629 + AluJo SINE Alu 137 162 -150 21 36 0 0 chr21 13113336 13113364 -31794206 + AT_rich Low_complexity Low_complexity 1 28 0 528 293 75 75 chr21 13113365 13113802 -31793768 + L1MEd LINE L1 787 1223 -5149 2669 240 45 31 chr21 13114182 13115968 -31791602 + L1M3 LINE L1 2 1858 -4353 482 245 8 27 chr21 13115966 13116137 -31791433 + L1MEd LINE L1 2351 2518 -3864 * 314 263 0 0 chr21 13116157 13116256 -31791314 + L1MEd LINE L1 3139 3237 -3145 5946 160 11 19 chr21 13116278 13118162 -31789408 - L1MA2 LINE L1 0 6304 4435 644 161 14 21 chr21 13118210 13118353 -31789217 + L1M3 LINE L1 4316 4457 -1753 * 38028 52 2 5 chr21 13118350 13123956 -31783614 + L1PA4 LINE L1 555 6155 0 30 0 0 0 chr21 13123985 13124015 -31783555 + AT_rich Low_complexity Low_complexity 1 30 0 3781 187 23 5 chr21 13124022 13124817 -31782753 + L1M3 LINE L1 4462 5270 -940 2098 172 47 15 chr21 13124817 13125223 -31782347 + MSTC LTR MaLR 1 419 -9 985 126 8 126 chr21 13125240 13125486 -31782084 + L1M3 LINE L1 5319 5535 -697 11381 78 31 31 chr21 13125486 13125643 -31781927 + HUERS-P1 LTR ERV1 4579 4735 -1528 2211 47 0 0 chr21 13125643 13125901 -31781669 + AluY SINE Alu 40 297 -14 11381 78 31 31 chr21 13125901 13127429 -31780141 + HUERS-P1 LTR ERV1 4735 6263 0 4155 94 23 3 chr21 13127429 13128005 -31779565 + LTR8 LTR ERV1 1 587 -104 5093 161 30 21 chr21 13128013 13129573 -31777997 + L1MA7 LINE L1 4600 6183 -108 2389 62 27 0 chr21 13129573 13129865 -31777705 - AluY SINE Alu -11 300 1 5093 161 30 21 chr21 13129865 13129972 -31777598 + L1MA7 LINE L1 6183 6288 -3 589 194 0 0 chr21 13130040 13130143 -31777427 - Tigger7 DNA MER2_type 0 2487 2385 * 1434 202 23 4 chr21 13130138 13130400 -31777170 - Tigger7 DNA MER2_type -466 267 1 1974 255 90 9 chr21 13130436 13131380 -31776190 + L1MEc LINE L1 2121 3108 -3107 499 257 9 0 chr21 13131821 13131934 -31775636 + MER81 DNA DNA 1 114 0 210 37 0 0 chr21 13132591 13132618 -31774952 + (CA)n Simple_repeat Simple_repeat 2 28 0 698 198 109 0 chr21 13133784 13133976 -31773594 + L1MB4 LINE L1 5934 6146 -34 750 292 85 4 chr21 13134144 13134380 -31773190 + MIR SINE MIR 3 257 -5 25 83 0 0 chr21 13134708 13134768 -31772802 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr21 13136921 13136943 -31770627 + AT_rich Low_complexity Low_complexity 1 22 0 547 255 107 23 chr21 13137092 13137308 -31770262 + MIR SINE MIR 29 262 0 1336 81 0 0 chr21 13137437 13137610 -31769960 - AluSg/x SINE Alu -3 307 135 180 0 0 0 chr21 13138637 13138657 -31768913 + (A)n Simple_repeat Simple_repeat 1 20 0 2758 16 0 0 chr21 13142344 13142657 -31764913 - L1P1 LINE L1 -478 5677 5365 4476 16 0 0 chr21 13142657 13143201 -31764369 + L1PA2 LINE L1 5642 6190 0 207 288 123 51 chr21 13144251 13144487 -31763083 + L2 LINE L2 2523 2775 -539 197 281 190 8 chr21 13144735 13144856 -31762714 + L2 LINE L2 3170 3312 -1 194 116 23 0 chr21 13145511 13145554 -31762016 + (TA)n Simple_repeat Simple_repeat 1 44 0 2087 115 45 0 chr21 13145608 13145895 -31761675 - AluSx SINE Alu -12 300 1 210 289 40 53 chr21 13146153 13146229 -31761341 - L3 LINE CR1 -11 1566 1492 1700 119 0 4 chr21 13146315 13146551 -31761019 + AluSq SINE Alu 1 235 -78 1623 226 42 53 chr21 13148146 13148672 -31758898 - MLT2B1 LTR ERVL 0 520 1 936 208 98 37 chr21 13149829 13150074 -31757496 - ORSL DNA AcHobo -15 260 1 1980 146 140 8 chr21 13150282 13150660 -31756910 - MSTA LTR MaLR 0 428 1 202 211 19 0 chr21 13150671 13150723 -31756847 + GA-rich Low_complexity Low_complexity 2 54 0 1516 201 16 73 chr21 13150890 13151274 -31756296 - MLT1B LTR MaLR 0 390 29 808 274 39 0 chr21 13151500 13151704 -31755866 + MIR SINE MIR 1 212 -50 497 186 20 29 chr21 13151936 13152038 -31755532 + MIR SINE MIR 118 218 -44 22 35 0 0 chr21 13153087 13153116 -31754454 + AT_rich Low_complexity Low_complexity 1 29 0 1758 181 14 0 chr21 13154129 13154422 -31753148 - AluJb SINE Alu -15 297 1 721 323 103 18 chr21 13155462 13155793 -31751777 - L2 LINE L2 -1 3312 2954 288 311 96 30 chr21 13157676 13157843 -31749727 - MIR SINE MIR -6 256 79 266 209 58 47 chr21 13158151 13158237 -31749333 + LTR48 LTR ERV1 171 257 -530 377 221 81 58 chr21 13158393 13158565 -31749005 + MER34 LTR ERV1 367 542 0 2878 146 69 22 chr21 13158724 13159257 -31748313 - LTR1 LTR ERV1 -2 783 226 1075 173 102 12 chr21 13159970 13160225 -31747345 - LTR1 LTR ERV1 -507 278 1 741 250 40 24 chr21 13160777 13161029 -31746541 + MER31-int LTR ERV1 894 1149 -5182 2623 78 20 0 chr21 13161198 13161546 -31746024 + THE1A LTR MaLR 1 355 0 1390 208 21 86 chr21 13161820 13162139 -31745431 + MER31-int LTR ERV1 3330 3554 -1382 2418 179 0 9 chr21 13162139 13162575 -31744995 + L1PB4 LINE L1 5711 6142 -14 1390 208 21 86 chr21 13162575 13162749 -31744821 + MER31-int LTR ERV1 3554 3738 -1198 495 140 130 0 chr21 13162749 13162849 -31744721 - MSTD LTR MaLR 0 396 284 2149 136 21 24 chr21 13162854 13163230 -31744340 - THE1C LTR MaLR 0 375 1 7540 133 9 22 chr21 13163230 13164399 -31743171 - THE1C-int LTR MaLR 0 1580 427 1320 150 59 66 chr21 13164405 13164692 -31742878 + THE1C LTR MaLR 86 370 -5 273 179 68 86 chr21 13164883 13165000 -31742570 + MER34C LTR ERV1 466 580 -5 6923 54 14 1 chr21 13165920 13166988 -31740582 + L1PA7 LINE L1 5073 6152 -2 185 280 0 0 chr21 13167036 13167086 -31740484 + L2 LINE L2 3262 3311 -2 201 355 141 37 chr21 13167236 13167484 -31740086 + L2 LINE L2 1575 1796 -1518 2111 130 3 0 chr21 13167484 13167783 -31739787 - AluSp SINE Alu -13 300 1 201 355 141 37 chr21 13167783 13168243 -31739327 + L2 LINE L2 1796 2357 -957 267 333 101 14 chr21 13168543 13168681 -31738889 - L2 LINE L2 0 3313 3164 3414 138 23 0 chr21 13168832 13169399 -31738171 - L1PA16 LINE L1 -2 6164 5585 432 292 143 34 chr21 13169760 13169969 -31737601 - MIR SINE MIR -12 250 19 1115 176 286 12 chr21 13170867 13171221 -31736349 + MSTB LTR MaLR 1 426 0 2007 161 51 108 chr21 13171223 13171731 -31735839 + MLT1D LTR MaLR 23 501 -4 614 309 48 27 chr21 13171741 13172071 -31735499 - MLT1I LTR MaLR -61 348 12 1975 244 70 28 chr21 13172775 13173344 -31734226 + MLT1E LTR MaLR 1 593 0 195 277 0 0 chr21 13175073 13175120 -31732450 + MIR3 SINE MIR 118 164 -44 619 267 140 49 chr21 13175121 13175428 -31732142 - MLT1H LTR MaLR 0 549 215 1831 196 37 3 chr21 13176837 13177190 -31730380 - MLT1A1 LTR MaLR 0 365 1 2655 90 3 0 chr21 13177441 13177795 -31729775 - THE1A LTR MaLR 0 355 1 11101 113 2 6 chr21 13177805 13179390 -31728180 - THE1A-int LTR MaLR 0 1580 1 2728 80 8 0 chr21 13179390 13179742 -31727828 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr21 13180735 13180760 -31726810 + AT_rich Low_complexity Low_complexity 1 25 0 1394 160 188 14 chr21 13183304 13183591 -31723979 - MER7A DNA MER2_type 0 346 12 184 318 68 0 chr21 13183809 13183897 -31723673 + L2 LINE L2 1881 1974 -1340 1922 221 31 15 chr21 13183898 13184356 -31723214 + MLT1C LTR MaLR 1 465 -2 1475 203 3 17 chr21 13184501 13184802 -31722768 - AluJo SINE Alu -15 297 1 506 299 56 5 chr21 13185052 13185249 -31722321 + L1ME LINE L1 5483 5689 -432 354 200 67 0 chr21 13185550 13185625 -31721945 - MER33 DNA MER1_type -244 80 1 2181 98 3 10 chr21 13185705 13186000 -31721570 + AluSx SINE Alu 1 293 -19 221 130 43 0 chr21 13187139 13187185 -31720385 + GA-rich Low_complexity Low_complexity 3 50 0 772 212 62 112 chr21 13189323 13189440 -31718130 - MLT1J1 LTR MaLR 0 446 325 324 0 0 0 chr21 13189440 13189476 -31718094 + (TG)n Simple_repeat Simple_repeat 2 37 0 772 212 62 112 chr21 13189476 13189777 -31717793 - MLT1J1 LTR MaLR -121 325 49 262 170 62 10 chr21 13190035 13190334 -31717236 + (TA)n Simple_repeat Simple_repeat 1 314 0 187 160 48 16 chr21 13190348 13190401 -31717169 + (TA)n Simple_repeat Simple_repeat 2 52 -78 2245 118 0 0 chr21 13190401 13190706 -31716864 + AluSc SINE Alu 1 305 -4 187 160 48 16 chr21 13190706 13190777 -31716793 + (TA)n Simple_repeat Simple_repeat 52 130 0 27 49 0 0 chr21 13193268 13193309 -31714261 + AT_rich Low_complexity Low_complexity 1 41 0 195 42 0 0 chr21 13194757 13194781 -31712789 + (A)n Simple_repeat Simple_repeat 1 24 0 368 325 20 66 chr21 13194854 13195051 -31712519 - MIR3 SINE MIR -2 206 19 365 289 70 0 chr21 13195202 13195330 -31712240 + MIR3 SINE MIR 65 201 -7 1733 135 126 33 chr21 13196231 13196564 -31711006 - THE1B LTR MaLR 0 364 1 442 265 22 44 chr21 13198317 13198498 -31709072 - MER5B DNA MER1_type -1 177 1 1457 137 47 94 chr21 13198882 13199223 -31708347 + AluSq SINE Alu 1 327 0 866 212 6 6 chr21 13199227 13199392 -31708178 + FRAM SINE Alu 1 164 -12 2354 143 0 14 chr21 13199507 13199877 -31707693 - MLT1A1 LTR MaLR 0 365 1 219 373 64 18 chr21 13199894 13200004 -31707566 + L2 LINE L2 3158 3272 0 2153 127 3 13 chr21 13200431 13200747 -31706823 + AluSq SINE Alu 1 313 0 222 353 0 12 chr21 13200821 13200906 -31706664 - MIR3 SINE MIR -1 207 124 427 295 34 75 chr21 13201384 13201652 -31705918 + MIR SINE MIR 6 262 0 23 0 0 0 chr21 13202366 13202389 -31705181 + AT_rich Low_complexity Low_complexity 1 23 0 2947 6 0 0 chr21 13202455 13202773 -31704797 + AluYb8 SINE Alu 1 318 0 1414 209 136 15 chr21 13202854 13203184 -31704386 + MLT1A2 LTR MaLR 1 370 -4 29 28 0 0 chr21 13203639 13203675 -31703895 + AT_rich Low_complexity Low_complexity 1 36 0 380 275 104 85 chr21 13204422 13204633 -31702937 - MIR SINE MIR 0 262 48 1587 65 97 0 chr21 13204982 13205199 -31702371 - AluSg SINE Alu -72 238 1 217 0 29 29 chr21 13205621 13205655 -31701915 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 320 250 12 0 chr21 13206142 13206226 -31701344 - MIR SINE MIR 0 262 178 1594 162 48 101 chr21 13207570 13207945 -31699625 + MLT2C1 LTR ERVL 1 355 -42 4200 132 50 8 chr21 13207945 13208666 -31698904 - Tigger3(Golem) DNA MER2_type -1 3028 2278 507 214 10 10 chr21 13208657 13208760 -31698810 - Tigger3(Golem) DNA MER2_type -2921 108 6 * 46 54 0 0 chr21 13208849 13208923 -31698647 + AT_rich Low_complexity Low_complexity 1 74 0 391 225 53 0 chr21 13208929 13209098 -31698472 + (TA)n Simple_repeat Simple_repeat 2 179 0 36 53 0 0 chr21 13209102 13209159 -31698411 + AT_rich Low_complexity Low_complexity 1 57 0 342 248 43 4 chr21 13209161 13209441 -31698129 + (TA)n Simple_repeat Simple_repeat 1 291 0 310 253 47 0 chr21 13209453 13209623 -31697947 + (TA)n Simple_repeat Simple_repeat 1 178 0 459 220 42 0 chr21 13209637 13209805 -31697765 + (TA)n Simple_repeat Simple_repeat 1 175 0 501 273 43 16 chr21 13209828 13210073 -31697497 - LTR33 LTR ERVL -7 514 262 1838 128 3 18 chr21 13210281 13210563 -31697007 + AluJb SINE Alu 35 312 0 294 73 0 0 chr21 13211522 13211563 -31696007 + (TG)n Simple_repeat Simple_repeat 1 41 0 928 259 13 0 chr21 13212275 13212507 -31695063 + MIR SINE MIR 28 262 0 508 275 53 8 chr21 13213759 13213890 -31693680 + L2 LINE L2 3175 3311 -2 329 286 0 0 chr21 13214681 13214751 -31692819 + L2 LINE L2 3243 3312 -1 733 52 0 0 chr21 13214953 13215049 -31692521 - AluY SINE Alu -3 308 213 2393 73 0 0 chr21 13215470 13215772 -31691798 + AluY SINE Alu 1 302 -9 417 345 71 12 chr21 13215927 13216095 -31691475 + MIR3 SINE MIR 10 187 -21 459 321 73 37 chr21 13216116 13216362 -31691208 + MIR SINE MIR 2 256 -6 2168 121 0 32 chr21 13216790 13217103 -31690467 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr21 13217459 13217482 -31690088 + AT_rich Low_complexity Low_complexity 1 23 0 1695 184 0 7 chr21 13218118 13218426 -31689144 + AluJb SINE Alu 1 306 0 2030 123 0 3 chr21 13220441 13220733 -31686837 + AluSc SINE Alu 1 291 -18 19966 159 15 23 chr21 13221911 13223815 -31683755 - L1MA3 LINE L1 -7 7717 5800 2167 85 0 0 chr21 13223815 13224127 -31683443 - AluY SINE Alu 0 312 1 19966 159 15 23 chr21 13224127 13226890 -31680680 - L1MA3 LINE L1 -1924 5800 3017 1042 140 83 184 chr21 13226890 13227226 -31680344 - AluSx SINE Alu 0 302 1 19966 159 15 23 chr21 13227226 13228103 -31679467 - L1MA3 LINE L1 -4707 3017 2135 1659 196 6 19 chr21 13228103 13228415 -31679155 - AluJb SINE Alu 0 312 5 19966 159 15 23 chr21 13228415 13230449 -31677121 - L1MA3 LINE L1 -5589 2135 195 908 116 0 0 chr21 13230450 13230588 -31676982 + L1P LINE L1 3675 3812 -2334 955 74 0 20 chr21 13230605 13230753 -31676817 - L1P LINE L1 -1429 4717 4573 2490 66 0 0 chr21 13230754 13231073 -31676497 + L1PA7 LINE L1 5828 6146 -8 1059 151 26 0 chr21 13231087 13231279 -31676291 - L1MA3 LINE L1 -7357 208 12 671 319 15 8 chr21 13231759 13232025 -31675545 - MARNA DNA Mariner -62 524 257 342 43 0 0 chr21 13232158 13232205 -31675365 - MADE1 DNA Mariner 0 80 34 35 83 0 0 chr21 13232520 13232604 -31674966 + AT_rich Low_complexity Low_complexity 1 84 0 24 32 0 0 chr21 13232642 13232673 -31674897 + AT_rich Low_complexity Low_complexity 1 31 0 711 184 31 117 chr21 13233284 13233507 -31674063 - MER20 DNA MER1_type -1 218 15 2487 231 83 60 chr21 13236615 13237784 -31669786 - L1ME2 LINE L1 -1 6958 5735 2128 113 0 19 chr21 13237784 13238102 -31669468 - AluSx SINE Alu 0 312 1 2487 231 83 60 chr21 13238102 13238395 -31669175 - L1ME2 LINE L1 -1224 5735 5450 865 221 55 58 chr21 13238417 13238598 -31668972 - L1ME2 LINE L1 -1726 5215 5034 2497 62 0 7 chr21 13238598 13238903 -31668667 - AluY SINE Alu -8 303 1 865 221 55 58 chr21 13238903 13239047 -31668523 - L1ME2 LINE L1 -1907 5034 4891 1099 312 64 20 chr21 13239058 13240037 -31667533 - L1ME2 LINE L1 -4579 2543 1317 205 127 73 0 chr21 13240037 13240092 -31667478 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 289 324 14 32 chr21 13240103 13240140 -31667430 - L1ME2 LINE L1 -5081 1342 1306 316 23 0 93 chr21 13240140 13240226 -31667344 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 289 324 14 32 chr21 13240226 13240407 -31667163 - L1ME2 LINE L1 -5117 1306 1128 463 286 87 45 chr21 13242765 13243320 -31664250 + HAL1 LINE L1 1080 1657 -850 41126 31 21 1 chr21 13244785 13250816 -31656754 + L1PA2 LINE L1 1 6155 0 356 253 46 0 chr21 13251462 13251549 -31656021 - MIR SINE MIR -6 256 166 21 0 0 0 chr21 13251559 13251580 -31655990 + AT_rich Low_complexity Low_complexity 1 21 0 38937 62 13 0 chr21 13251580 13257654 -31649916 - L1PA5 LINE L1 -3 6151 1 1979 141 10 13 chr21 13257658 13257964 -31649606 - AluSx SINE Alu -7 305 1 499 312 14 0 chr21 13257965 13258103 -31649467 - MIR SINE MIR -112 150 11 375 276 129 9 chr21 13258527 13258643 -31648927 + MIR3 SINE MIR 9 138 -70 2462 43 40 10 chr21 13259438 13259740 -31647830 - AluY SINE Alu 0 311 1 458 52 0 0 chr21 13259778 13259836 -31647734 - MER72 LTR ERV1 -30 692 635 445 293 9 17 chr21 13260416 13260532 -31647038 - MIR3 SINE MIR -48 160 46 902 281 94 50 chr21 13262495 13262608 -31644962 + L2 LINE L2 1852 1959 -1355 3161 191 56 60 chr21 13262608 13263503 -31644067 + MER97a DNA MER1_type 2 892 -2 902 281 94 50 chr21 13263503 13263891 -31643679 + L2 LINE L2 1959 2375 -939 224 381 24 0 chr21 13264069 13264153 -31643417 + L2 LINE L2 2670 2755 -559 2125 111 0 14 chr21 13264259 13264586 -31642984 + AluSx SINE Alu 1 323 0 365 342 93 34 chr21 13264653 13264890 -31642680 + L2 LINE L2 3022 3272 0 369 0 0 0 chr21 13266031 13266072 -31641498 + (TG)n Simple_repeat Simple_repeat 2 42 0 1788 214 72 35 chr21 13266313 13266800 -31640770 - MLT1D LTR MaLR 0 505 1 509 269 31 43 chr21 13267129 13267377 -31640193 + L1ME4a LINE L1 5635 5881 -240 * 724 266 145 17 chr21 13267372 13267824 -31639746 - MLT1G3 LTR MaLR -51 544 1 26 30 0 0 chr21 13267928 13267961 -31639609 + AT_rich Low_complexity Low_complexity 1 33 0 256 325 169 7 chr21 13268117 13268271 -31639299 - MIR SINE MIR -55 207 29 680 311 4 9 chr21 13269539 13269764 -31637806 + MLT1I LTR MaLR 166 389 -20 455 286 54 47 chr21 13269870 13270167 -31637403 + L1MB2 LINE L1 5630 5928 -243 * 2804 175 98 10 chr21 13269905 13270510 -31637060 + L1MC2 LINE L1 5661 6318 -26 2716 252 42 13 chr21 13271000 13271080 -31636490 + L1M4b LINE L1 29 105 -6754 2060 136 3 7 chr21 13271080 13271388 -31636182 + AluSx SINE Alu 1 307 -5 2716 252 42 13 chr21 13271388 13271978 -31635592 + L1M4b LINE L1 105 718 -6141 949 122 0 0 chr21 13272818 13272966 -31634604 + AluSg/x SINE Alu 165 312 0 277 307 29 44 chr21 13273136 13273273 -31634297 - L2 LINE L2 -221 3051 2917 201 298 0 0 chr21 13274101 13274148 -31633422 - L2 LINE L2 0 3272 3226 1153 116 0 3 chr21 13274158 13274390 -31633180 + AluSx SINE Alu 11 301 -9 207 333 69 50 chr21 13274562 13274721 -31632849 - L2 LINE L2 -221 3051 2890 286 333 113 12 chr21 13275067 13275235 -31632335 - L2 LINE L2 -552 2762 2578 379 35 35 0 chr21 13279702 13279759 -31627811 + (TA)n Simple_repeat Simple_repeat 1 59 0 481 241 68 56 chr21 13281323 13281485 -31626085 - MER5A DNA MER1_type -3 186 23 278 211 13 40 chr21 13287710 13287786 -31619784 + MLT1L LTR MaLR 16 89 -526 487 220 25 8 chr21 13287818 13287936 -31619634 + MER104 DNA Tc2 56 175 -5 2231 120 0 0 chr21 13287970 13288271 -31619299 + AluSx SINE Alu 1 301 -11 2082 132 60 3 chr21 13290366 13290685 -31616885 - MER1B DNA MER1_type 0 337 1 1759 169 0 32 chr21 13291385 13291693 -31615877 - AluJb SINE Alu -14 298 1 3051 180 55 53 chr21 13291718 13292534 -31615036 - Looper DNA T2_type 0 1558 741 1619 183 0 18 chr21 13292534 13292818 -31614752 + AluJb SINE Alu 1 279 -33 1679 181 104 126 chr21 13292857 13293181 -31614389 - Looper DNA T2_type -806 752 422 789 198 12 58 chr21 13293181 13293353 -31614217 + FRAM SINE Alu 1 164 -2 1679 181 104 126 chr21 13293353 13293797 -31613773 - Looper DNA T2_type -1136 422 1 944 98 0 0 chr21 13297407 13297530 -31610040 - AluSg1 SINE Alu -186 123 1 21 0 0 0 chr21 13297899 13297920 -31609650 + AT_rich Low_complexity Low_complexity 1 21 0 1839 117 61 0 chr21 13297925 13298223 -31609347 + AluSg SINE Alu 1 314 0 1865 159 10 3 chr21 13299569 13299865 -31607705 - AluJb SINE Alu -12 300 3 22 0 0 0 chr21 13299970 13299992 -31607578 + AT_rich Low_complexity Low_complexity 1 22 0 335 306 31 103 chr21 13300202 13300363 -31607207 + L2 LINE L2 2982 3118 -154 12099 129 58 67 chr21 13300363 13302799 -31604771 + Tigger1 DNA MER2_type 5 2418 0 335 306 31 103 chr21 13302799 13302898 -31604672 + L2 LINE L2 3118 3223 -49 588 149 0 0 chr21 13303211 13303298 -31604272 - AluS SINE Alu -224 88 2 22 0 0 0 chr21 13303715 13303737 -31603833 + AT_rich Low_complexity Low_complexity 1 22 0 366 325 49 43 chr21 13304665 13304828 -31602742 - L3 LINE CR1 0 1577 1414 348 289 113 29 chr21 13304829 13305033 -31602537 + MIR SINE MIR 32 252 -10 236 325 125 31 chr21 13305056 13305216 -31602354 - L3 LINE CR1 -196 1381 1207 708 250 154 9 chr21 13305806 13306026 -31601544 + MIR SINE MIR 8 259 -3 500 44 0 15 chr21 13306139 13306207 -31601363 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 234 191 0 0 chr21 13306207 13306254 -31601316 + (TA)n Simple_repeat Simple_repeat 1 47 0 219 69 0 0 chr21 13306652 13306681 -31600889 + (GGAGA)n Simple_repeat Simple_repeat 4 32 0 242 234 25 67 chr21 13306975 13307093 -31600477 - MIR SINE MIR -61 147 33 1533 160 10 41 chr21 13309773 13310066 -31597504 - AluJo SINE Alu -27 285 2 1236 142 9 24 chr21 13311303 13311514 -31596056 + AluJo SINE Alu 86 293 -19 2034 103 0 0 chr21 13311863 13312124 -31595446 - AluSx SINE Alu -31 281 21 282 308 69 30 chr21 13312894 13313064 -31594506 + MIR SINE MIR 10 186 -59 258 32 0 0 chr21 13313477 13313508 -31594062 + (TG)n Simple_repeat Simple_repeat 2 32 0 555 304 64 95 chr21 13313508 13313748 -31593822 + L2 LINE L2 2611 2857 -456 827 206 120 17 chr21 13313748 13314040 -31593530 - MER33 DNA MER1_type -2 322 1 555 304 64 95 chr21 13314040 13314421 -31593149 + L2 LINE L2 2857 3238 -75 35 0 0 0 chr21 13314552 13314587 -31592983 + AT_rich Low_complexity Low_complexity 1 35 0 250 176 24 0 chr21 13315406 13315491 -31592079 + (TA)n Simple_repeat Simple_repeat 2 88 0 479 263 25 0 chr21 13315492 13315610 -31591960 - MIR SINE MIR -47 215 95 2402 156 35 9 chr21 13316271 13316694 -31590876 + Tigger2a DNA MER2_type 1 434 0 1350 193 110 0 chr21 13316742 13316996 -31590574 - AluJo SINE Alu -30 282 1 237 410 49 0 chr21 13317283 13317427 -31590143 + MIR3 SINE MIR 34 184 -24 442 276 41 0 chr21 13318057 13318155 -31589415 - L2 LINE L2 0 3272 3171 231 88 0 0 chr21 13320193 13320227 -31587343 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 241 53 0 chr21 13326460 13326630 -31580940 + Charlie1 DNA MER1_type 1 179 -2582 653 202 16 0 chr21 13326655 13326784 -31580786 + Charlie1 DNA MER1_type 2631 2761 0 213 303 165 37 chr21 13327028 13327137 -31580433 - L2 LINE L2 -13 3259 3137 257 253 86 65 chr21 13327420 13327665 -31579905 + MER5C DNA MER1_type 74 323 -1 192 328 136 34 chr21 13328391 13328568 -31579002 - L2 LINE L2 -575 2739 2545 2417 52 0 0 chr21 13328918 13329206 -31578364 - AluY SINE Alu -21 290 3 26 30 0 0 chr21 13329217 13329250 -31578320 + AT_rich Low_complexity Low_complexity 1 33 0 265 108 0 0 chr21 13329947 13329984 -31577586 - MER103 DNA DNA -126 40 4 2215 112 7 0 chr21 13330167 13330470 -31577100 - AluSg SINE Alu -5 305 1 224 354 77 22 chr21 13331789 13331970 -31575600 + L2 LINE L2 3115 3305 -8 21 57 0 0 chr21 13332491 13332526 -31575044 + AT_rich Low_complexity Low_complexity 1 35 0 1216 223 25 39 chr21 13332660 13333015 -31574555 + L1ME1 LINE L1 5664 6013 -153 577 161 45 0 chr21 13333018 13333130 -31574440 + L1MA10 LINE L1 6209 6325 -9 476 247 68 56 chr21 13333137 13333477 -31574093 + L1ME4a LINE L1 5589 5932 -189 2262 93 7 3 chr21 13334322 13334755 -31572815 + AluY SINE Alu 1 434 0 832 148 0 8 chr21 13334948 13335076 -31572494 - FLAM_A SINE Alu -6 127 1 608 276 143 0 chr21 13335185 13335381 -31572189 - MIR SINE MIR 0 262 39 308 223 54 47 chr21 13335821 13335969 -31571601 + L1ME4a LINE L1 5745 5893 -228 485 304 282 17 chr21 13336009 13336364 -31571206 - L2 LINE L2 -41 3272 2824 682 210 78 47 chr21 13336559 13336816 -31570754 - L1M4 LINE L1 -2008 4138 3874 44 20 0 0 chr21 13336838 13336889 -31570681 + AT_rich Low_complexity Low_complexity 1 51 0 553 216 224 28 chr21 13336913 13337191 -31570379 + L1ME1 LINE L1 4004 4334 -1812 2336 113 3 0 chr21 13337196 13337507 -31570063 - AluSx SINE Alu 0 312 1 382 151 0 3 chr21 13337588 13337659 -31569911 + AluJ/FLAM SINE Alu 2 58 -244 2376 225 89 46 chr21 13337660 13339298 -31568272 + L1ME1 LINE L1 4442 6161 -5 21 82 0 0 chr21 13339310 13339359 -31568211 + AT_rich Low_complexity Low_complexity 1 49 0 6161 99 23 2 chr21 13339382 13340282 -31567288 + L1PA11 LINE L1 5254 6172 -2 1936 183 54 17 chr21 13340413 13340965 -31566605 + L1MB8 LINE L1 5526 6176 -2 779 303 121 28 chr21 13341128 13341942 -31565628 + L1ME LINE L1 4317 5200 -946 2040 93 37 0 chr21 13341985 13342254 -31565316 + AluSq SINE Alu 6 284 -29 363 23 0 0 chr21 13342287 13342331 -31565239 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr21 13342504 13342530 -31565040 + AT_rich Low_complexity Low_complexity 1 26 0 474 245 36 7 chr21 13342566 13342705 -31564865 + L1ME LINE L1 5321 5463 -707 369 217 101 16 chr21 13342951 13343080 -31564490 + L1MC4a LINE L1 6443 6582 -1226 2038 238 64 14 chr21 13343089 13343831 -31563739 + L1MC4 LINE L1 6927 7864 -178 812 282 81 16 chr21 13343883 13344320 -31563250 + L1ME3A LINE L1 5254 5724 -446 209 297 0 0 chr21 13344320 13344384 -31563186 + (TA)n Simple_repeat Simple_repeat 2 65 0 212 0 0 35 chr21 13344386 13344415 -31563155 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 336 289 118 5 chr21 13344433 13344575 -31562995 + L1ME3A LINE L1 5735 5887 -275 1199 85 40 0 chr21 13344578 13344755 -31562815 + L1MA1 LINE L1 6118 6301 -1 1226 249 194 33 chr21 13346570 13347385 -31560185 + L2 LINE L2 2277 3296 -17 712 174 38 0 chr21 13347406 13347538 -31560032 + FRAM SINE Alu 17 153 -23 213 39 0 0 chr21 13347541 13347567 -31560003 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 400 273 144 21 chr21 13347852 13348046 -31559524 + MLT1L LTR MaLR 371 588 -27 267 238 16 0 chr21 13348409 13348472 -31559098 + GA-rich Low_complexity Low_complexity 3 66 0 2474 67 0 0 chr21 13350665 13350963 -31556607 + AluY SINE Alu 3 300 -11 669 216 72 41 chr21 13350967 13351161 -31556409 - MIR SINE MIR -24 238 39 320 243 287 7 chr21 13351405 13351541 -31556029 - MIR SINE MIR -59 203 30 28 0 0 0 chr21 13352511 13352539 -31555031 + AT_rich Low_complexity Low_complexity 1 28 0 362 302 129 30 chr21 13352672 13352874 -31554696 - MIR SINE MIR -40 222 1 24 0 0 0 chr21 13352935 13352959 -31554611 + AT_rich Low_complexity Low_complexity 1 24 0 2178 82 0 4 chr21 13353276 13353557 -31554013 - AluSg SINE Alu -12 298 19 367 294 61 78 chr21 13356612 13356843 -31550727 - L2 LINE L2 -71 3242 3016 256 243 171 0 chr21 13356829 13356899 -31550671 - L2 LINE L2 -511 2803 2722 * 362 222 206 16 chr21 13357122 13357248 -31550322 + MER46C DNA MER2_type 1 150 -188 1110 163 71 77 chr21 13357795 13358121 -31549449 + MER33 DNA MER1_type 1 324 0 1047 231 70 28 chr21 13358661 13359110 -31548460 + L1ME3 LINE L1 5585 6041 -129 25 65 0 0 chr21 13359563 13359609 -31547961 + AT_rich Low_complexity Low_complexity 1 46 0 1956 164 25 8 chr21 13360184 13360543 -31547027 + MLT1A1 LTR MaLR 1 365 0 2242 102 0 0 chr21 13361534 13361838 -31545732 - AluSx SINE Alu -8 304 1 273 294 0 15 chr21 13362583 13362651 -31544919 + L2 LINE L2 3206 3272 0 11543 128 10 2 chr21 13363003 13364758 -31542812 - Tigger1 DNA MER2_type -1 2417 650 2318 82 17 94 chr21 13364758 13364979 -31542591 - THE1C LTR MaLR -2 373 195 2304 68 3 0 chr21 13364979 13365272 -31542298 + AluY SINE Alu 1 294 -17 2318 82 17 94 chr21 13365272 13365454 -31542116 - THE1C LTR MaLR -180 195 1 * 3891 134 53 6 chr21 13365454 13366086 -31541484 - Tigger1 DNA MER2_type -1755 663 2 767 211 156 41 chr21 13368396 13368666 -31538904 + MER74B LTR ERVL 56 356 -266 524 253 50 45 chr21 13368729 13368927 -31538643 + MER74B LTR ERVL 350 548 -74 249 258 114 18 chr21 13368788 13368955 -31538615 - MER88 LTR ERVL -218 246 64 * 183 80 0 0 chr21 13368992 13369017 -31538553 + (TG)n Simple_repeat Simple_repeat 2 26 0 218 309 48 56 chr21 13369850 13369976 -31537594 - MIR SINE MIR -62 146 22 213 315 41 0 chr21 13372454 13372527 -31535043 - L2 LINE L2 -8 3264 3189 278 326 11 11 chr21 13373467 13373562 -31534008 + MIR SINE MIR 58 152 -110 226 269 0 43 chr21 13373657 13373750 -31533820 + A-rich Low_complexity Low_complexity 2 90 0 420 284 19 45 chr21 13375444 13375599 -31531971 + MIR SINE MIR 80 230 -32 206 323 121 32 chr21 13375795 13375919 -31531651 - MIR3 SINE MIR -20 188 54 222 118 0 0 chr21 13377245 13377279 -31530291 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 373 331 61 81 chr21 13382111 13382799 -31524771 + L1M2 LINE L1 564 1237 -5612 258 384 8 30 chr21 13385883 13386016 -31521554 + L2 LINE L2 3127 3256 -16 195 410 14 14 chr21 13386084 13386228 -31521342 - L2 LINE L2 -213 3059 2916 1257 178 56 44 chr21 13386383 13386703 -31520867 - MER33 DNA MER1_type 0 324 1 252 0 0 0 chr21 13388025 13388053 -31519517 + (CA)n Simple_repeat Simple_repeat 2 29 0 2380 169 45 13 chr21 13388061 13388698 -31518872 + L1M4 LINE L1 4876 5530 -644 2459 203 91 0 chr21 13388710 13389218 -31518352 - MLT1F1 LTR MaLR -13 554 1 207 0 0 0 chr21 13390671 13390694 -31516876 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 325 12 0 chr21 13390963 13391043 -31516527 - LTR67 LTR ERVL -363 194 114 2347 175 28 0 chr21 13391296 13391695 -31515875 - MSTB2 LTR MaLR 0 457 48 679 91 9 9 chr21 13391695 13391805 -31515765 + (TTCTC)n Simple_repeat Simple_repeat 3 112 0 1792 174 17 7 chr21 13391810 13392108 -31515462 - AluJb SINE Alu -11 301 1 413 109 0 31 chr21 13392108 13392172 -31515398 - MSTB2 LTR MaLR -395 62 1 182 269 29 67 chr21 13393247 13393351 -31514219 - L2 LINE L2 0 3313 3214 1399 188 37 51 chr21 13394015 13394425 -31513145 - HsTC2 DNA Tc2 -36 1862 1283 207 0 0 0 chr21 13396591 13396614 -31510956 + (CA)n Simple_repeat Simple_repeat 2 24 0 297 267 56 11 chr21 13397635 13397725 -31509845 + L2 LINE L2 3177 3270 -2 553 326 129 4 chr21 13397727 13397960 -31509610 - MIR SINE MIR 0 262 1 689 292 59 92 chr21 13399193 13399772 -31507798 - MLT1K LTR MaLR -2 586 27 22 0 0 0 chr21 13400241 13400263 -31507307 + AT_rich Low_complexity Low_complexity 1 22 0 265 362 29 0 chr21 13401321 13401426 -31506144 + L2 LINE L2 2430 2537 -777 366 235 12 0 chr21 13401465 13401550 -31506020 + MLT1F1 LTR MaLR 482 567 0 383 298 139 34 chr21 13401760 13402091 -31505479 + L1MC4a LINE L1 5531 5788 -333 191 311 0 0 chr21 13402111 13402172 -31505398 - MIR SINE MIR -14 248 188 324 0 0 0 chr21 13402193 13402229 -31505341 + (TG)n Simple_repeat Simple_repeat 2 37 0 180 290 86 21 chr21 13403731 13403824 -31503746 - MIR SINE MIR -85 123 25 207 0 0 0 chr21 13405001 13405024 -31502546 + (A)n Simple_repeat Simple_repeat 1 23 0 249 260 30 60 chr21 13405607 13405707 -31501863 + MIR3 SINE MIR 107 203 -5 1886 103 127 24 chr21 13406732 13407072 -31500498 + THE1C LTR MaLR 1 375 0 200 224 52 0 chr21 13407242 13407300 -31500270 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 189 0 0 0 chr21 13407897 13407918 -31499652 + (TA)n Simple_repeat Simple_repeat 2 22 0 285 350 64 0 chr21 13408080 13408220 -31499350 + L1ME3 LINE L1 5493 5641 -521 248 200 9 45 chr21 13408270 13408380 -31499190 + A-rich Low_complexity Low_complexity 6 111 0 369 333 51 9 chr21 13408380 13408596 -31498974 + L1ME3 LINE L1 5716 5940 -222 285 276 10 10 chr21 13408734 13408832 -31498738 + L1MC4 LINE L1 7929 8026 -16 401 211 183 100 chr21 13409289 13409633 -31497937 + L1ME4a LINE L1 5461 5775 -346 1534 187 10 27 chr21 13409633 13409927 -31497643 + AluJo SINE Alu 1 289 -23 401 211 183 100 chr21 13409927 13410171 -31497399 + L1ME4a LINE L1 5775 6100 -21 422 217 142 17 chr21 13410611 13410731 -31496839 + L2 LINE L2 3138 3272 0 460 250 51 28 chr21 13411341 13411517 -31496053 + L3b LINE CR1 1107 1286 -297 316 310 0 0 chr21 13412294 13412407 -31495163 + MER103 DNA DNA 2 114 -52 252 303 12 0 chr21 13414941 13415042 -31492528 + L1M4 LINE L1 5506 5607 -555 1776 147 24 7 chr21 13415166 13415459 -31492111 + AluSx SINE Alu 1 298 -14 24 67 0 0 chr21 13415627 13415672 -31491898 + AT_rich Low_complexity Low_complexity 1 45 0 223 186 0 0 chr21 13415791 13415834 -31491736 + T-rich Low_complexity Low_complexity 1 43 0 1934 233 40 13 chr21 13417429 13417906 -31489664 - MLT1E2 LTR MaLR 0 626 137 279 0 0 0 chr21 13418030 13418061 -31489509 + (CTA)n Simple_repeat Simple_repeat 3 33 0 564 281 99 18 chr21 13418062 13418283 -31489287 - MIR SINE MIR -6 256 18 2581 61 0 0 chr21 13419830 13420141 -31487429 + AluY SINE Alu 1 311 0 659 201 91 41 chr21 13422325 13422544 -31485026 + MIR SINE MIR 33 262 0 279 182 273 0 chr21 13422774 13422840 -31484730 - L2 LINE L2 0 3313 3230 851 114 0 30 chr21 13423829 13423960 -31483610 - AluJb SINE Alu -185 127 1 387 0 0 0 chr21 13424716 13424759 -31482811 + (TG)n Simple_repeat Simple_repeat 1 43 0 295 303 0 0 chr21 13425357 13425433 -31482137 - L2 LINE L2 -9 3304 3229 1996 213 61 49 chr21 13425687 13425896 -31481674 - L1MD2 LINE L1 -12 6347 6142 360 64 0 0 chr21 13425896 13425943 -31481627 + (TG)n Simple_repeat Simple_repeat 2 48 0 1996 213 61 49 chr21 13425943 13426386 -31481184 - L1MD2 LINE L1 -217 6142 5687 399 308 27 36 chr21 13427553 13427624 -31479946 + L1ME LINE L1 5527 5597 -524 2111 147 0 0 chr21 13427624 13427931 -31479639 - AluSx SINE Alu -5 307 1 399 308 27 36 chr21 13427931 13428080 -31479490 + L1ME LINE L1 5597 5745 -376 22 0 0 0 chr21 13428084 13428106 -31479464 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 13428778 13428802 -31478768 + AT_rich Low_complexity Low_complexity 1 24 0 1103 289 48 9 chr21 13428976 13429412 -31478158 + L1MC4a LINE L1 5452 5904 -1904 21 0 0 0 chr21 13432122 13432143 -31475427 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 13432450 13432486 -31475084 + AT_rich Low_complexity Low_complexity 1 36 0 25 27 0 68 chr21 13432575 13432605 -31474965 + AT_rich Low_complexity Low_complexity 1 31 -37 1676 143 8 16 chr21 13432605 13432856 -31474714 + AluSx SINE Alu 37 285 -27 25 27 0 68 chr21 13432856 13432872 -31474698 + AT_rich Low_complexity Low_complexity 31 47 -21 189 0 0 0 chr21 13432872 13432893 -31474677 + (TG)n Simple_repeat Simple_repeat 2 22 0 25 27 0 68 chr21 13432893 13432918 -31474652 + AT_rich Low_complexity Low_complexity 47 68 0 263 191 15 0 chr21 13433008 13433076 -31474494 + GA-rich Low_complexity Low_complexity 3 71 0 2310 102 3 0 chr21 13434047 13434342 -31473228 + AluSp SINE Alu 1 296 -17 704 223 114 0 chr21 13434346 13434521 -31473049 + MLT1A1 LTR MaLR 165 359 -6 348 311 16 33 chr21 13434849 13434971 -31472599 - MIR3 SINE MIR -49 159 40 1721 185 0 17 chr21 13435399 13435691 -31471879 + AluJb SINE Alu 1 287 -25 1600 166 98 0 chr21 13436199 13436464 -31471106 + AluJb SINE Alu 1 291 -21 2104 91 0 0 chr21 13436471 13436734 -31470836 + AluSg SINE Alu 39 301 -9 527 43 14 0 chr21 13437977 13438047 -31469523 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 213 288 50 0 chr21 13439059 13439139 -31468431 - L2 LINE L2 -3 3310 3227 426 330 36 13 chr21 13439259 13439483 -31468087 - L2 LINE L2 -1256 2058 1830 726 259 59 30 chr21 13440536 13440772 -31466798 + MIR SINE MIR 19 261 -1 205 220 99 33 chr21 13442088 13442179 -31465391 + MIR SINE MIR 63 159 -103 187 377 46 39 chr21 13443156 13443286 -31464284 + L2 LINE L2 3133 3263 -9 1941 137 3 0 chr21 13443524 13443808 -31463762 + AluSx SINE Alu 1 285 -27 21 57 0 0 chr21 13444351 13444386 -31463184 + AT_rich Low_complexity Low_complexity 1 35 0 214 171 0 0 chr21 13444663 13444698 -31462872 + GA-rich Low_complexity Low_complexity 4 38 0 294 73 0 0 chr21 13446011 13446052 -31461518 + (CA)n Simple_repeat Simple_repeat 2 42 0 487 313 0 0 chr21 13446416 13446531 -31461039 + MIR SINE MIR 2 116 -146 1629 144 45 27 chr21 13446544 13446836 -31460734 - THE1B LTR MaLR -67 297 1 181 297 109 0 chr21 13446851 13446915 -31460655 + MIR SINE MIR 160 230 -32 1044 143 5 16 chr21 13447530 13447719 -31459851 + MER20 DNA MER1_type 33 219 0 213 303 19 18 chr21 13447727 13447890 -31459680 - L2 LINE L2 -499 2815 2579 2192 167 32 41 chr21 13449934 13450370 -31457200 + MSTB1 LTR MaLR 1 432 0 469 333 212 10 chr21 13450492 13450798 -31456772 - L2 LINE L2 -20 3293 2926 2010 176 56 40 chr21 13450813 13451302 -31456268 - MLT1D LTR MaLR -4 563 4 182 140 0 20 chr21 13451693 13451743 -31455827 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 291 263 220 22 chr21 13453773 13453910 -31453660 - MIR SINE MIR -36 172 11 189 262 0 0 chr21 13454194 13454236 -31453334 + L2 LINE L2 3213 3254 -18 1858 163 3 7 chr21 13454807 13455108 -31452462 + AluJb SINE Alu 1 300 -12 279 0 0 0 chr21 13455849 13455880 -31451690 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 225 0 28 chr21 13456949 13457020 -31450550 + A-rich Low_complexity Low_complexity 2 70 0 207 320 0 13 chr21 13457906 13457984 -31449586 + A-rich Low_complexity Low_complexity 5 81 0 316 285 80 35 chr21 13459026 13459189 -31448381 - MIR SINE MIR -63 145 22 1759 142 0 74 chr21 13459678 13460015 -31447555 - AluJb SINE Alu 0 312 1 503 326 47 5 chr21 13460306 13460499 -31447071 - MIR SINE MIR -13 249 49 251 352 119 19 chr21 13460920 13461230 -31446340 + L2 LINE L2 2230 2570 -744 354 206 0 0 chr21 13461491 13461554 -31446016 + AluJ/FLAM SINE Alu 1 63 -239 1048 186 0 0 chr21 13461583 13461755 -31445815 + FAM SINE Alu 1 172 -3 690 243 62 55 chr21 13461787 13462059 -31445511 + Charlie8 DNA MER1_type 2 275 -2142 1852 169 52 72 chr21 13462069 13462406 -31445164 + L1MC3 LINE L1 7302 7644 -398 1971 147 4 0 chr21 13462406 13462685 -31444885 - AluSx SINE Alu -22 290 11 1852 169 52 72 chr21 13462685 13462819 -31444751 + L1MC3 LINE L1 7644 8037 -5 235 381 23 28 chr21 13463405 13463580 -31443990 - MIR SINE MIR -61 147 17 2349 55 10 0 chr21 13463880 13464173 -31443397 - AluY SINE Alu -15 296 1 344 80 0 0 chr21 13464175 13464225 -31443345 + MADE1 DNA Mariner 31 80 0 577 168 15 44 chr21 13466784 13466921 -31440649 - MER3 DNA MER1_type 0 209 77 1999 126 14 0 chr21 13468059 13468344 -31439226 - AluSx SINE Alu -11 301 13 844 249 28 0 chr21 13469563 13469776 -31437794 - MER20 DNA MER1_type 0 219 1 205 259 0 17 chr21 13470752 13470810 -31436760 + CT-rich Low_complexity Low_complexity 5 61 0 1465 306 30 69 chr21 13472179 13472602 -31434968 + MER115 DNA AcHobo 29 416 -277 2239 89 61 19 chr21 13472602 13472962 -31434608 - THE1C LTR MaLR 0 375 1 1465 306 30 69 chr21 13472962 13473230 -31434340 + MER115 DNA AcHobo 416 693 0 369 0 0 0 chr21 13473526 13473567 -31434003 + (CA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 13473777 13473799 -31433771 + AT_rich Low_complexity Low_complexity 1 22 0 2111 127 41 36 chr21 13476494 13476856 -31430714 + THE1B LTR MaLR 1 364 0 181 315 101 11 chr21 13478078 13478167 -31429403 - MIR SINE MIR -78 184 88 398 211 13 0 chr21 13479272 13479348 -31428222 + L2 LINE L2 3195 3271 -42 2218 131 0 3 chr21 13479445 13479759 -31427811 - AluSq SINE Alu 0 313 1 2552 175 24 13 chr21 13479760 13480292 -31427278 + L1MB8 LINE L1 5631 6168 -10 187 266 114 38 chr21 13481267 13481346 -31426224 - L2 LINE L2 0 3313 3229 300 284 78 0 chr21 13481418 13481520 -31426050 - MIR SINE MIR -65 197 88 23 0 0 0 chr21 13481557 13481580 -31425990 + AT_rich Low_complexity Low_complexity 1 23 0 1704 231 21 21 chr21 13481580 13481742 -31425828 - L1MA9 LINE L1 -38 6274 6113 2321 83 3 0 chr21 13481742 13482044 -31425526 - AluY SINE Alu -8 303 1 1704 231 21 21 chr21 13482044 13482365 -31425205 - L1MA9 LINE L1 -198 6114 5791 251 279 240 0 chr21 13484247 13484351 -31423219 + L2 LINE L2 3182 3310 -3 244 241 25 51 chr21 13484644 13484723 -31422847 - MIR3 SINE MIR -127 81 5 5910 98 24 12 chr21 13485610 13486648 -31420922 + L1PA10 LINE L1 5116 6149 -19 189 0 0 0 chr21 13486648 13486669 -31420901 + (TTAAA)n Simple_repeat Simple_repeat 1 21 0 5910 98 24 12 chr21 13486669 13486687 -31420883 + L1PA10 LINE L1 6149 6165 -3 409 289 7 22 chr21 13486938 13487073 -31420497 - MLT1L LTR MaLR -362 253 121 21 0 0 0 chr21 13487224 13487245 -31420325 + AT_rich Low_complexity Low_complexity 1 21 0 1613 187 53 34 chr21 13487316 13487674 -31419896 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr21 13487787 13487809 -31419761 + (A)n Simple_repeat Simple_repeat 1 22 0 2187 110 0 7 chr21 13489954 13490253 -31417317 - AluSq SINE Alu -16 297 1 217 224 102 0 chr21 13490560 13490609 -31416961 + MIR3 SINE MIR 120 173 -35 1556 187 29 0 chr21 13491742 13492020 -31415550 - AluJb SINE Alu -26 286 1 1293 205 7 15 chr21 13492637 13492910 -31414660 + AluJo SINE Alu 37 307 -5 2340 95 0 7 chr21 13493254 13493560 -31414010 + AluSq SINE Alu 1 304 -9 307 298 202 0 chr21 13494003 13494117 -31413453 - MER5A DNA MER1_type 0 189 53 296 245 12 129 chr21 13494735 13494898 -31412672 + MIR3 SINE MIR 40 183 -25 2226 93 24 0 chr21 13495546 13495835 -31411735 - AluSx SINE Alu -16 296 1 2506 54 0 0 chr21 13497076 13497374 -31410196 + AluY SINE Alu 10 307 -4 253 197 99 0 chr21 13497995 13498066 -31409504 - MIR3 SINE MIR -30 178 101 2147 85 3 30 chr21 13498242 13498592 -31408978 - AluY SINE Alu 0 342 1 8682 85 7 13 chr21 13498601 13500600 -31406970 - L1PA7 LINE L1 -3 6151 4143 333 264 118 0 chr21 13500789 13500899 -31406671 - L2 LINE L2 -4 3268 3146 213 383 111 21 chr21 13502186 13502421 -31405149 + L2 LINE L2 3017 3272 0 317 318 130 5 chr21 13502763 13502951 -31404619 + MIR SINE MIR 34 252 -10 1449 201 28 17 chr21 13503289 13503643 -31403927 + MLT1A1 LTR MaLR 1 358 -7 22 0 0 0 chr21 13504582 13504604 -31402966 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr21 13504638 13504659 -31402911 + AT_rich Low_complexity Low_complexity 1 21 0 2106 124 137 8 chr21 13505180 13505559 -31402011 - MSTA LTR MaLR 0 428 1 184 273 0 0 chr21 13505643 13505687 -31401883 - L2 LINE L2 -8 3264 3221 503 147 0 0 chr21 13505713 13505788 -31401782 + AluY SINE Alu 204 278 -33 189 358 97 15 chr21 13505921 13506055 -31401515 - L2 LINE L2 -220 3052 2908 212 395 18 9 chr21 13506124 13506238 -31401332 - L2 LINE L2 -553 2761 2647 388 291 81 35 chr21 13506245 13506417 -31401153 + L3 LINE CR1 351 530 -1047 239 307 88 42 chr21 13506444 13506636 -31400934 + L2 LINE L2 2827 3027 -245 383 273 145 15 chr21 13506902 13507081 -31400489 + MIR SINE MIR 34 236 -26 857 290 113 11 chr21 13507674 13508143 -31399427 + LTR33 LTR ERVL 1 517 -4 24 0 0 0 chr21 13508254 13508278 -31399292 + AT_rich Low_complexity Low_complexity 1 24 0 2212 70 31 0 chr21 13510463 13510474 -31397096 - AluY SINE Alu -15 296 287 477 0 0 0 chr21 13510474 13510527 -31397043 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2212 70 31 0 chr21 13510527 13510802 -31396768 - AluY SINE Alu -24 287 1 808 197 88 27 chr21 13511271 13511601 -31395969 - MSTD LTR MaLR 0 396 1 1932 138 14 3 chr21 13512342 13512639 -31394931 + AluSx SINE Alu 2 301 -11 1815 170 3 20 chr21 13512801 13513107 -31394463 + AluJb SINE Alu 1 301 -11 391 315 17 51 chr21 13513901 13514079 -31393491 + MIR3 SINE MIR 32 203 -5 383 277 62 34 chr21 13514351 13514755 -31392815 + L1MC4 LINE L1 7507 8036 -6 403 288 135 27 chr21 13515058 13515280 -31392290 + MIR SINE MIR 17 262 0 38 51 0 0 chr21 13516662 13516721 -31390849 + AT_rich Low_complexity Low_complexity 1 59 0 291 195 34 153 chr21 13517500 13517618 -31389952 - MIR3 SINE MIR -8 200 97 229 347 91 50 chr21 13517843 13517964 -31389606 - L2 LINE L2 -28 3244 3119 285 171 61 0 chr21 13518802 13518884 -31388686 + (TA)n Simple_repeat Simple_repeat 2 88 0 299 285 29 15 chr21 13518963 13519100 -31388470 + L1ME4a LINE L1 5688 5826 -295 357 185 49 25 chr21 13519115 13519196 -31388374 + MIR SINE MIR 180 262 0 367 246 109 22 chr21 13519202 13519340 -31388230 + L1ME4a LINE L1 5832 5981 -140 1771 160 12 91 chr21 13519342 13519761 -31387809 - MLT1B LTR MaLR -2 388 3 2538 44 0 3 chr21 13519884 13520180 -31387390 + AluY SINE Alu 2 296 -15 282 267 30 104 chr21 13521887 13522022 -31385548 - MIR3 SINE MIR -81 127 3 1784 227 6 6 chr21 13523317 13523670 -31383900 + MLT1A1 LTR MaLR 1 353 -12 1575 207 92 45 chr21 13524631 13525075 -31382495 + MLT1C LTR MaLR 3 467 0 717 291 17 34 chr21 13525440 13525674 -31381896 - MIR SINE MIR -8 254 25 322 345 72 29 chr21 13526773 13526912 -31380658 + L2 LINE L2 3127 3271 -1 25 75 0 0 chr21 13529899 13529952 -31377618 + AT_rich Low_complexity Low_complexity 1 53 0 234 314 0 0 chr21 13530703 13530773 -31376797 + T-rich Low_complexity Low_complexity 1 70 0 180 244 111 0 chr21 13530774 13530819 -31376751 - L2 LINE L2 -16 3297 3248 1945 101 0 22 chr21 13530941 13531217 -31376353 + AluSq SINE Alu 43 312 -1 362 311 84 49 chr21 13531253 13531584 -31375986 - L2 LINE L2 -219 3053 2685 248 305 53 42 chr21 13531675 13531770 -31375800 - L2 LINE L2 0 3272 3177 739 250 19 0 chr21 13531811 13531971 -31375599 + MER58B DNA MER1_type 161 323 -18 977 51 0 0 chr21 13533380 13533498 -31374072 - L1PA5 LINE L1 0 6154 6037 723 43 21 0 chr21 13533498 13533591 -31373979 + L1PA5 LINE L1 5847 5941 -213 238 205 72 60 chr21 13533744 13533827 -31373743 + MIR SINE MIR 98 181 -81 426 213 112 69 chr21 13534645 13534799 -31372771 + L1MC5 LINE L1 7629 7775 -186 192 97 0 0 chr21 13534799 13534830 -31372740 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 426 213 112 69 chr21 13534830 13534854 -31372716 + L1MC5 LINE L1 7775 7797 -164 1420 215 0 17 chr21 13534854 13535147 -31372423 - AluJb SINE Alu -23 289 2 426 213 112 69 chr21 13535147 13535244 -31372326 + L1MC5 LINE L1 7797 7917 -44 4544 126 15 126 chr21 13535320 13536877 -31370693 - pTR5 LTR ERV1 0 2606 1524 2486 73 3 10 chr21 13537152 13537466 -31370104 + AluSx SINE Alu 1 312 0 318 87 0 0 chr21 13538453 13538499 -31369071 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr21 13538498 13538518 -31369052 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 237 221 73 0 chr21 13540604 13540672 -31366898 + MIR SINE MIR 84 156 -106 255 342 66 37 chr21 13541311 13541691 -31365879 + L2 LINE L2 2140 2530 -784 1946 170 38 39 chr21 13542251 13542797 -31364773 - MLT2A2 LTR ERVL 0 554 6 2289 108 0 10 chr21 13543330 13543636 -31363934 - AluSq SINE Alu -10 303 1 21 36 0 0 chr21 13543637 13543665 -31363905 + AT_rich Low_complexity Low_complexity 1 28 0 353 141 31 16 chr21 13544455 13544519 -31363051 + MER5A DNA MER1_type 125 189 0 239 312 46 0 chr21 13544530 13544634 -31362936 - MLT1I LTR MaLR -14 436 277 356 278 45 15 chr21 13544685 13544818 -31362752 - L1ME4a LINE L1 -9 6112 5976 434 237 59 8 chr21 13544871 13544989 -31362581 - MLT1J1 LTR MaLR -257 189 66 1848 132 22 39 chr21 13545104 13545415 -31362155 - AluSq SINE Alu -7 306 1 463 286 23 120 chr21 13545771 13546030 -31361540 - MER102b DNA MER1_type -2 339 106 387 0 0 0 chr21 13546143 13546186 -31361384 + (TG)n Simple_repeat Simple_repeat 2 44 0 1767 169 0 18 chr21 13546186 13546470 -31361100 - AluJo SINE Alu -28 284 6 2217 92 0 0 chr21 13546640 13546947 -31360623 - AluSg SINE Alu 0 307 1 22 0 0 0 chr21 13547150 13547172 -31360398 + AT_rich Low_complexity Low_complexity 1 22 0 2275 98 3 0 chr21 13547637 13547933 -31359637 - AluSq SINE Alu -16 297 1 203 96 58 19 chr21 13548027 13548079 -31359491 + T-rich Low_complexity Low_complexity 2 55 0 1837 166 3 10 chr21 13548201 13548514 -31359056 - AluJb SINE Alu 0 312 2 585 262 76 107 chr21 13548635 13549123 -31358447 - HAL1 LINE L1 -1218 1289 817 1433 112 79 9 chr21 13549271 13549486 -31358084 - MER30 DNA MER1_type 0 230 1 397 218 36 103 chr21 13549486 13549651 -31357919 + LTR8A LTR ERV1 574 727 0 527 301 35 22 chr21 13549654 13549880 -31357690 + LTR33A LTR ERVL 295 523 0 23 92 0 0 chr21 13550260 13550325 -31357245 + AT_rich Low_complexity Low_complexity 1 65 0 301 253 40 0 chr21 13551454 13551529 -31356041 + MLT1K LTR MaLR 511 588 0 2926 131 23 5 chr21 13551885 13552327 -31355243 + L1PA15 LINE L1 5709 6158 -7 237 322 82 29 chr21 13552569 13552740 -31354830 + MIR SINE MIR 19 198 -64 920 131 81 45 chr21 13552775 13552973 -31354597 + THE1C LTR MaLR 83 287 -88 186 323 150 47 chr21 13552994 13553018 -31354552 - L2 LINE L2 -201 3071 3051 240 59 0 0 chr21 13553018 13553052 -31354518 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 186 323 150 47 chr21 13553052 13553154 -31354416 - L2 LINE L2 -221 3051 2932 927 238 44 67 chr21 13553371 13553392 -31354178 - MER39 LTR ERV1 -49 636 616 1616 117 101 79 chr21 13553392 13553759 -31353811 + THE1C LTR MaLR 1 375 0 927 238 44 67 chr21 13553759 13554122 -31353448 - MER39 LTR ERV1 -69 616 243 298 314 86 9 chr21 13554127 13554232 -31353338 - MER39 LTR ERV1 -574 133 21 831 50 0 0 chr21 13554326 13554426 -31353144 - L1PA5 LINE L1 -6 6148 6049 286 92 8 0 chr21 13554426 13554473 -31353097 + L1P1 LINE L1 5698 5735 -420 1241 153 5 0 chr21 13554957 13555153 -31352417 - AluSg/x SINE Alu -1 311 115 572 266 115 28 chr21 13555888 13556034 -31351536 - MIR SINE MIR 0 262 89 1752 112 0 0 chr21 13556034 13556275 -31351295 + AluSq SINE Alu 1 241 -72 572 266 115 28 chr21 13556275 13556346 -31351224 - MIR SINE MIR -173 89 26 2575 159 26 14 chr21 13556896 13557317 -31350253 + MSTB LTR MaLR 1 426 0 369 0 0 0 chr21 13557489 13557530 -31350040 + (TA)n Simple_repeat Simple_repeat 1 41 0 1114 164 94 101 chr21 13557530 13557816 -31349754 - AluJo SINE Alu -18 284 1 487 242 176 6 chr21 13560914 13561096 -31346474 - MIR SINE MIR -2 260 48 215 317 146 65 chr21 13561147 13561545 -31346025 - L2 LINE L2 -13 3259 2830 827 239 49 10 chr21 13562766 13562971 -31344599 + MIR SINE MIR 40 252 -10 195 100 0 0 chr21 13563146 13563176 -31344394 + (TC)n Simple_repeat Simple_repeat 1 30 0 198 301 72 12 chr21 13563354 13563437 -31344133 + MER5A DNA MER1_type 91 178 -11 878 237 127 27 chr21 13564372 13564803 -31342767 - MLT1D LTR MaLR 0 505 6 306 0 0 0 chr21 13565695 13565729 -31341841 + (TA)n Simple_repeat Simple_repeat 2 35 0 2237 99 0 7 chr21 13565729 13566032 -31341538 - AluY SINE Alu -10 301 1 1342 185 83 23 chr21 13566101 13566366 -31341204 - AluJo SINE Alu -31 281 1 24 0 0 0 chr21 13567039 13567063 -31340507 + AT_rich Low_complexity Low_complexity 1 24 0 221 207 158 24 chr21 13567947 13568029 -31339541 + L2 LINE L2 3209 3301 -12 426 279 113 25 chr21 13568758 13568962 -31338608 - MLT1K LTR MaLR -18 570 349 270 357 108 46 chr21 13569825 13570130 -31337440 - L2 LINE L2 -59 3213 2890 3344 108 20 0 chr21 13570738 13571182 -31336388 - MLT2A2 LTR ERVL 0 453 1 977 190 86 18 chr21 13571243 13571669 -31335901 + MLT1D LTR MaLR 22 492 -13 22 35 0 0 chr21 13572843 13572872 -31334698 + AT_rich Low_complexity Low_complexity 1 29 0 212 255 117 75 chr21 13572925 13573019 -31334551 - MIR SINE MIR -79 183 86 2259 106 0 3 chr21 13573271 13573572 -31333998 + AluSg SINE Alu 1 300 -10 206 64 0 85 chr21 13574712 13574759 -31332811 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 22 0 0 0 chr21 13575366 13575388 -31332182 + AT_rich Low_complexity Low_complexity 1 22 0 221 333 10 10 chr21 13575658 13575757 -31331813 - MIR SINE MIR -151 111 13 654 327 15 21 chr21 13575771 13576016 -31331554 + MIR SINE MIR 15 262 0 270 160 0 0 chr21 13576041 13576091 -31331479 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 471 317 25 25 chr21 13577412 13577611 -31329959 - MIR SINE MIR -62 200 2 1016 220 9 22 chr21 13578372 13578599 -31328971 - MER58A DNA MER1_type 0 224 1 10544 31 0 0 chr21 13579160 13581184 -31326386 - L1PA3 LINE L1 -3 6152 4129 1082 258 143 7 chr21 13582430 13582876 -31324694 - Charlie4a DNA MER1_type -1 507 1 1158 170 0 28 chr21 13583378 13583590 -31323980 + MER3 DNA MER1_type 4 209 0 281 355 42 10 chr21 13584186 13584325 -31323245 - MIR SINE MIR -63 145 7 2593 47 0 0 chr21 13584826 13585127 -31322443 + AluY SINE Alu 1 301 -10 696 262 52 22 chr21 13586053 13586282 -31321288 - MIR SINE MIR -22 240 5 1251 190 28 118 chr21 13586419 13586586 -31320984 + MLT1A2 LTR MaLR 11 191 -183 2184 128 0 0 chr21 13586586 13586891 -31320679 + AluSx SINE Alu 1 305 -7 1251 190 28 118 chr21 13586891 13587123 -31320447 + MLT1A2 LTR MaLR 191 374 0 261 139 0 0 chr21 13587659 13587702 -31319868 + (TTCTCC)n Simple_repeat Simple_repeat 6 48 0 1214 189 0 5 chr21 13587704 13587921 -31319649 - AluJo SINE Alu -4 308 93 1856 148 3 26 chr21 13588319 13588630 -31318940 + AluSx SINE Alu 1 304 -8 2496 112 0 6 chr21 13588863 13589220 -31318350 + THE1A LTR MaLR 1 355 0 2065 127 0 0 chr21 13589752 13590082 -31317488 - AluSx SINE Alu 0 330 1 288 301 83 58 chr21 13591289 13591445 -31316125 + MER5A DNA MER1_type 3 162 -27 248 340 68 65 chr21 13593610 13593931 -31313639 - LTR16C LTR ERVL -31 460 139 24 0 0 0 chr21 13594810 13594834 -31312736 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 13596681 13596702 -31310868 + AT_rich Low_complexity Low_complexity 1 21 0 759 161 0 8 chr21 13596702 13596820 -31310750 - AluJo SINE Alu -184 118 2 21 0 0 0 chr21 13597061 13597082 -31310488 + AT_rich Low_complexity Low_complexity 1 21 0 211 372 0 0 chr21 13597498 13597576 -31309994 + L2 LINE L2 3196 3273 -40 250 240 73 132 chr21 13597764 13597968 -31309602 - HAL1 LINE L1 -34 2473 2282 1067 279 129 59 chr21 13597991 13598631 -31308939 - HAL1 LINE L1 -343 2164 1434 1547 199 42 9 chr21 13598631 13598963 -31308607 - MER61A LTR ERV1 0 343 1 1067 279 129 59 chr21 13598963 13599273 -31308297 - HAL1 LINE L1 -1073 1434 1147 332 314 139 35 chr21 13599278 13599826 -31307744 - HAL1 LINE L1 -1416 1091 487 22 80 0 0 chr21 13600166 13600216 -31307354 + AT_rich Low_complexity Low_complexity 1 50 0 204 245 0 0 chr21 13601200 13601249 -31306321 + A-rich Low_complexity Low_complexity 1 49 0 2302 132 25 6 chr21 13602098 13602455 -31305115 - THE1B LTR MaLR 0 364 1 1832 134 3 34 chr21 13602517 13602852 -31304718 - AluSx SINE Alu 0 326 1 25 75 0 0 chr21 13603754 13603807 -31303763 + AT_rich Low_complexity Low_complexity 1 53 0 1401 210 45 18 chr21 13604498 13604784 -31302786 - AluJo SINE Alu -18 294 1 191 343 58 44 chr21 13604977 13605251 -31302319 + L2 LINE L2 2281 2558 -756 2105 174 142 9 chr21 13606020 13606479 -31301091 + MLT2B1 LTR ERVL 1 520 0 7422 162 52 48 chr21 13606915 13608552 -31299018 - MER52A LTR ERV1 0 1755 1 511 306 70 30 chr21 13609318 13609589 -31297981 - LTR16A1 LTR ERVL -5 452 171 336 159 0 0 chr21 13613081 13613150 -31294420 - L1MA10 LINE L1 -2 6332 6264 1000 230 38 83 chr21 13613153 13613385 -31294185 - L1MEc LINE L1 -5173 1223 1021 3321 142 9 15 chr21 13613385 13613915 -31293655 - MER1A DNA MER1_type 0 527 1 1000 230 38 83 chr21 13613915 13614151 -31293419 - L1MEc LINE L1 -5375 1021 776 257 143 18 0 chr21 13614151 13614207 -31293363 + LTR66 LTR ERVL 383 439 -171 217 200 40 0 chr21 13614207 13614257 -31293313 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 770 233 88 16 chr21 13614286 13614479 -31293091 - MIR SINE MIR -9 253 47 1579 269 59 22 chr21 13614482 13614991 -31292579 - L1MEc LINE L1 -5636 760 233 572 213 63 0 chr21 13615006 13615133 -31292437 - L1MEc LINE L1 -6227 169 35 524 114 0 48 chr21 13615153 13615258 -31292312 + (TG)n Simple_repeat Simple_repeat 1 100 0 2161 102 0 3 chr21 13616361 13616714 -31290856 + AluSp SINE Alu 1 352 0 216 300 17 0 chr21 13617069 13617129 -31290441 + L2 LINE L2 3205 3265 -7 22 94 0 0 chr21 13617295 13617359 -31290211 + AT_rich Low_complexity Low_complexity 1 64 0 357 24 0 0 chr21 13617593 13617635 -31289935 + (CA)n Simple_repeat Simple_repeat 1 42 0 2099 131 35 71 chr21 13618692 13619058 -31288512 - LTR18A LTR ERVL -1 356 4 782 207 57 10 chr21 13619276 13619469 -31288101 - MIR SINE MIR -54 208 7 271 0 0 49 chr21 13620365 13620406 -31287164 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2479 179 26 13 chr21 13622583 13623119 -31284451 - L1MC2 LINE L1 -1 6343 5801 939 193 6 0 chr21 13623195 13623371 -31284199 + L1PB4 LINE L1 5967 6143 -13 2070 141 0 6 chr21 13625386 13625872 -31281698 + AluSx SINE Alu 3 312 0 1214 69 23 0 chr21 13625671 13625895 -31281675 + (GAAA)n Simple_repeat Simple_repeat 2 229 0 204 284 102 0 chr21 13626691 13626779 -31280791 - L2 LINE L2 -1216 2098 2002 265 272 70 35 chr21 13627651 13627765 -31279805 + MIR SINE MIR 33 150 -58 1557 207 42 6 chr21 13628771 13629124 -31278446 + MER47A DNA MER2_type 1 366 0 24 32 0 0 chr21 13629733 13629764 -31277806 + AT_rich Low_complexity Low_complexity 1 31 0 1749 162 60 30 chr21 13629809 13630173 -31277397 + THE1C LTR MaLR 1 375 0 1143 254 53 33 chr21 13631265 13631663 -31275907 - MLT1I LTR MaLR -1 408 3 1506 210 31 12 chr21 13631880 13632101 -31275469 - MER58B DNA MER1_type -2079 341 126 2359 96 0 3 chr21 13632101 13632413 -31275157 - AluY SINE Alu 0 311 1 1506 210 31 12 chr21 13632413 13632445 -31275125 - MER58B DNA MER1_type -2294 126 96 2307 108 0 0 chr21 13632445 13632740 -31274830 + AluSg SINE Alu 1 295 -15 1506 210 31 12 chr21 13632740 13632809 -31274761 - MER58B DNA MER1_type -2324 96 12 2168 92 0 10 chr21 13633766 13634060 -31273510 + AluSc SINE Alu 1 291 -18 2523 65 0 0 chr21 13634445 13634769 -31272801 - L1PA6 LINE L1 0 6154 5831 2310 106 39 25 chr21 13634788 13635147 -31272423 + THE1B LTR MaLR 1 364 0 4058 198 68 118 chr21 13635806 13635870 -31271700 - Charlie1a DNA MER1_type -1310 1451 1385 611 212 50 11 chr21 13635870 13636049 -31271521 - MER53 DNA DNA 0 189 4 4058 198 68 118 chr21 13636049 13636467 -31271103 - Charlie1a DNA MER1_type -1376 1385 947 2038 130 9 22 chr21 13636467 13636783 -31270787 - AluSx SINE Alu 0 312 1 4058 198 68 118 chr21 13636783 13637826 -31269744 - Charlie1a DNA MER1_type -1814 947 2 253 351 55 30 chr21 13638458 13638623 -31268947 + L2 LINE L2 2952 3120 -193 5464 174 28 14 chr21 13638628 13639914 -31267656 - L1MA5 LINE L1 0 6300 4992 322 296 74 42 chr21 13639927 13640116 -31267454 + L2 LINE L2 3112 3306 -7 1523 196 11 21 chr21 13640116 13640401 -31267169 + AluJo SINE Alu 1 282 -30 189 289 96 36 chr21 13640610 13640693 -31266877 + L2 LINE L2 3225 3312 -1 210 37 0 0 chr21 13643502 13643529 -31264041 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 316 219 16 0 chr21 13643789 13643853 -31263717 + MER52A LTR ERV1 1 65 -1690 6127 193 19 88 chr21 13644446 13645984 -31261586 + MER52A LTR ERV1 342 1755 0 23 0 0 0 chr21 13646137 13646160 -31261410 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr21 13647427 13647456 -31260114 + AT_rich Low_complexity Low_complexity 1 29 0 345 295 97 38 chr21 13648465 13648702 -31258868 - L1M4 LINE L1 -784 5362 5112 341 286 22 11 chr21 13648982 13649073 -31258497 + MER5A DNA MER1_type 11 102 -87 205 267 0 0 chr21 13649527 13649572 -31257998 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 245 30 17 chr21 13649658 13649796 -31257774 - L1MC5 LINE L1 -1 8041 7829 332 252 2 0 chr21 13649912 13650005 -31257565 - L1ME2 LINE L1 -1 6165 6069 1382 225 107 34 chr21 13650026 13650492 -31257078 + L1ME2 LINE L1 5523 6022 -142 14391 156 122 4 chr21 13650493 13653316 -31254254 - L1PA12 LINE L1 -4004 3580 425 1211 263 13 19 chr21 13653580 13653956 -31253614 + L1M4 LINE L1 4048 4421 -1725 1695 213 58 3 chr21 13653980 13654342 -31253228 - L1PB4 LINE L1 -11 6145 5764 3364 220 44 20 chr21 13654345 13655573 -31251997 + L1M4 LINE L1 4415 5668 -516 2603 61 0 0 chr21 13655578 13655889 -31251681 + AluY SINE Alu 1 311 0 4428 142 29 0 chr21 13655894 13656657 -31250913 + L1MA8 LINE L1 5500 6284 -7 21 57 0 0 chr21 13657131 13657166 -31250404 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr21 13657363 13657384 -31250186 + (A)n Simple_repeat Simple_repeat 1 21 0 288 229 121 12 chr21 13657944 13658027 -31249543 + LTR67 LTR ERVL 458 549 -8 282 345 108 44 chr21 13658089 13658288 -31249282 + L2 LINE L2 2555 2783 -531 1837 127 61 71 chr21 13658288 13658667 -31248903 + THE1C LTR MaLR 1 375 0 282 345 108 44 chr21 13658667 13658783 -31248787 + L2 LINE L2 2783 2890 -424 213 344 10 31 chr21 13659051 13659147 -31248423 + L2 LINE L2 3137 3230 -42 215 296 204 0 chr21 13661450 13661538 -31246032 - L2 LINE L2 0 3313 3208 244 242 81 0 chr21 13662329 13662391 -31245179 - MER91C DNA MER1_type -52 88 22 288 375 53 14 chr21 13662554 13662762 -31244808 + L2 LINE L2 2344 2559 -755 2183 114 0 3 chr21 13663487 13663785 -31243785 - AluSq SINE Alu -16 297 1 706 311 60 38 chr21 13664446 13664813 -31242757 - L2 LINE L2 -2 3311 2937 9688 182 25 68 chr21 13664813 13667694 -31239876 + L1PA16 LINE L1 2700 5702 -464 2309 104 0 3 chr21 13667694 13668001 -31239569 + AluSg SINE Alu 1 306 -4 9688 182 25 68 chr21 13668001 13668139 -31239431 + L1PA16 LINE L1 5702 5844 -322 2025 135 10 3 chr21 13668139 13668436 -31239134 + AluSx SINE Alu 1 299 -13 9688 182 25 68 chr21 13668436 13668836 -31238734 + L1PA16 LINE L1 5844 5951 -215 2211 130 0 0 chr21 13668836 13669144 -31238426 + AluSx SINE Alu 1 308 -4 9688 182 25 68 chr21 13669144 13669343 -31238227 + L1PA16 LINE L1 5951 6157 -9 185 279 0 23 chr21 13669366 13669409 -31238161 - L2 LINE L2 -364 2949 2908 710 317 99 25 chr21 13669513 13669876 -31237694 - LTR33 LTR ERVL -131 390 1 1214 305 221 24 chr21 13669876 13670600 -31236970 - L2 LINE L2 -402 2912 2046 1741 219 95 7 chr21 13671123 13671584 -31235986 + MLT1D LTR MaLR 4 505 0 1112 173 64 54 chr21 13674508 13674803 -31232767 + MER33 DNA MER1_type 13 310 -14 180 0 0 0 chr21 13675066 13675086 -31232484 + (CA)n Simple_repeat Simple_repeat 2 21 0 232 333 64 13 chr21 13676303 13676381 -31231189 + MER5A DNA MER1_type 92 173 -16 * 373 256 23 0 chr21 13676314 13676400 -31231170 - MER5A DNA MER1_type -93 96 9 448 16 0 0 chr21 13678237 13678298 -31229272 - AluY SINE Alu -2 309 249 189 296 136 11 chr21 13679393 13679481 -31228089 - MIR SINE MIR -90 118 20 2478 226 108 26 chr21 13680880 13681057 -31226513 - L1ME1 LINE L1 -8 6158 5997 1960 164 0 0 chr21 13681057 13681368 -31226202 - AluSx SINE Alu -1 311 1 2478 226 108 26 chr21 13681368 13682234 -31225336 - L1ME1 LINE L1 -169 5997 5030 751 278 39 7 chr21 13682241 13682525 -31225045 - L1ME1 LINE L1 -3148 2998 2706 1085 158 0 0 chr21 13682620 13682791 -31224779 - Tigger4(Zombi) DNA MER2_type -1 2730 2560 3087 146 25 31 chr21 13683624 13684174 -31223396 - LTR10A LTR ERV1 -62 547 1 549 111 89 0 chr21 13684799 13684889 -31222681 + MER4A LTR ERV1 1 98 -566 1735 134 0 90 chr21 13684942 13685263 -31222307 + MER4A LTR ERV1 373 664 0 204 125 0 0 chr21 13685435 13685467 -31222103 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr21 13685790 13685818 -31221752 + AT_rich Low_complexity Low_complexity 1 28 0 1476 202 6 22 chr21 13685942 13686259 -31221311 - AluJo SINE Alu 0 312 1 2632 188 7 71 chr21 13686698 13687047 -31220523 - L1MB8 LINE L1 0 6178 5891 216 0 0 0 chr21 13687047 13687071 -31220499 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2632 188 7 71 chr21 13687071 13687397 -31220173 - L1MB8 LINE L1 -287 5891 5546 284 319 74 37 chr21 13687550 13687713 -31219857 + MIR SINE MIR 20 188 -74 21 57 0 0 chr21 13687760 13687795 -31219775 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 13688953 13688975 -31218595 + AT_rich Low_complexity Low_complexity 1 22 0 716 261 6 6 chr21 13689294 13689459 -31218111 + MER5A DNA MER1_type 1 165 -24 616 248 31 12 chr21 13689480 13689641 -31217929 + MER5B DNA MER1_type 1 164 -14 484 267 81 37 chr21 13689661 13689822 -31217748 + MER5B DNA MER1_type 8 175 -3 211 336 100 36 chr21 13690581 13690801 -31216769 + L2 LINE L2 2549 2782 -532 483 283 41 70 chr21 13691278 13691522 -31216048 - MIR SINE MIR -6 256 20 306 340 23 2 chr21 13692373 13692483 -31215087 - MIR SINE MIR -65 143 25 2537 62 0 3 chr21 13692483 13692791 -31214779 - AluY SINE Alu -4 307 1 306 340 23 2 chr21 13692791 13692803 -31214767 - MIR SINE MIR -183 25 15 442 279 66 11 chr21 13692999 13693182 -31214388 - MLT1I LTR MaLR -137 272 80 370 136 0 0 chr21 13693192 13693251 -31214319 + LTR1B LTR ERV1 1 59 -767 3638 156 102 18 chr21 13693341 13694048 -31213522 + LTR1B LTR ERV1 61 826 0 2278 288 85 19 chr21 13695331 13696371 -31211199 - L2 LINE L2 -102 3211 2107 1211 318 74 18 chr21 13696788 13697358 -31210212 + L2 LINE L2 1937 2538 -776 416 318 71 12 chr21 13697527 13697697 -31209873 - MIR3 SINE MIR -9 199 20 4246 163 81 4 chr21 13698436 13699201 -31208369 + LTR1B LTR ERV1 3 826 0 514 329 52 26 chr21 13699496 13699727 -31207843 + MIR SINE MIR 16 252 -10 1412 234 119 30 chr21 13699889 13700351 -31207219 - MLT1D LTR MaLR -2 503 1 208 338 123 36 chr21 13700500 13700719 -31206851 - L2 LINE L2 -201 3071 2834 191 333 128 8 chr21 13701329 13701446 -31206124 + L2 LINE L2 3175 3305 -8 2372 100 6 0 chr21 13702571 13702882 -31204688 + AluSq SINE Alu 1 313 0 662 316 86 12 chr21 13703379 13703715 -31203855 + L3 LINE CR1 1178 1538 -39 644 344 21 12 chr21 13703789 13704123 -31203447 + L1ME LINE L1 357 693 -6028 1722 193 86 82 chr21 13704416 13704976 -31202594 + LTR1B LTR ERV1 265 826 0 2083 151 10 62 chr21 13704977 13705393 -31202177 + L1MA7 LINE L1 5617 6010 -281 777 196 0 21 chr21 13705567 13705710 -31201860 + FRAM SINE Alu 19 158 -18 307 243 0 87 chr21 13705840 13706025 -31201545 + (ATATG)n Simple_repeat Simple_repeat 5 173 0 222 272 0 84 chr21 13706183 13706374 -31201196 + (ATATG)n Simple_repeat Simple_repeat 5 179 0 655 280 82 14 chr21 13706374 13706803 -31200767 + L1ME LINE L1 1506 1963 -4577 * 1113 234 46 54 chr21 13706801 13707305 -31200265 + L1MEc LINE L1 3270 3769 -2771 669 273 33 0 chr21 13707290 13707473 -31200097 + L1ME LINE L1 2003 2191 -4530 * 436 279 122 40 chr21 13707519 13707634 -31199936 + L1ME LINE L1 4870 4974 -1566 1862 144 17 45 chr21 13707634 13707988 -31199582 - MER2 DNA MER2_type 0 344 1 436 279 122 40 chr21 13707988 13708403 -31199167 + L1ME LINE L1 4974 5444 -1096 5241 131 25 25 chr21 13708534 13708915 -31198655 - L1PA16 LINE L1 -21 6145 5766 2351 143 23 10 chr21 13708915 13709313 -31198257 + MER57A LTR ERV1 1 403 0 5241 131 25 25 chr21 13709313 13709741 -31197829 - L1PA16 LINE L1 -400 5766 5329 2331 107 0 0 chr21 13709741 13710039 -31197531 - AluSx SINE Alu -14 298 1 5241 131 25 25 chr21 13710039 13710240 -31197330 - L1PA16 LINE L1 -837 5329 5130 1217 174 0 5 chr21 13710242 13710437 -31197133 - AluJb SINE Alu -17 295 102 3432 222 92 5 chr21 13710440 13711362 -31196208 - L1ME LINE L1 -1034 5506 4505 405 223 52 133 chr21 13711362 13711595 -31195975 + L1ME LINE L1 5490 5703 -837 629 227 97 28 chr21 13711605 13711821 -31195749 + L1PA16 LINE L1 5936 6166 0 242 226 146 49 chr21 13711831 13711995 -31195575 + L1ME LINE L1 5822 6001 -555 26 30 0 0 chr21 13712445 13712478 -31195092 + AT_rich Low_complexity Low_complexity 1 33 0 520 329 52 29 chr21 13712661 13713257 -31194313 + L1MC4a LINE L1 4409 5018 -1128 1543 259 83 28 chr21 13713551 13714200 -31193370 + L1MC4a LINE L1 5363 6047 -1761 2311 145 40 42 chr21 13715048 13715475 -31192095 + MSTB LTR MaLR 1 426 0 482 274 134 103 chr21 13715499 13715608 -31191962 + L2 LINE L2 2804 2908 -405 1884 163 0 0 chr21 13715608 13715920 -31191650 + AluSx SINE Alu 1 312 0 482 274 134 103 chr21 13715920 13716141 -31191429 + L2 LINE L2 2908 3158 -155 1408 213 66 20 chr21 13716141 13716488 -31191082 - MLT1A1 LTR MaLR 0 365 3 482 274 134 103 chr21 13716488 13716647 -31190923 + L2 LINE L2 3158 3311 -2 1839 213 102 28 chr21 13716684 13717154 -31190416 + MLT1D LTR MaLR 1 505 0 297 0 0 0 chr21 13717245 13717278 -31190292 + (TC)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr21 13717277 13717300 -31190270 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 543 167 0 0 chr21 13717317 13717431 -31190139 + GA-rich Low_complexity Low_complexity 2 115 0 1970 183 2 37 chr21 13717431 13717836 -31189734 - MLT2D LTR ERVL -20 534 3 506 203 8 45 chr21 13718337 13718470 -31189100 + MLT1K LTR MaLR 447 574 -14 354 313 40 67 chr21 13719207 13719431 -31188139 + MLT1K LTR MaLR 88 305 -283 326 325 121 29 chr21 13720299 13720539 -31187031 + MLT1J1 LTR MaLR 58 319 -127 790 271 76 46 chr21 13720694 13720996 -31186574 - MLT1J LTR MaLR -159 352 42 2746 13 0 0 chr21 13721628 13721931 -31185639 - AluY SINE Alu -8 303 1 24 67 0 0 chr21 13722076 13722121 -31185449 + AT_rich Low_complexity Low_complexity 1 45 0 2258 98 0 9 chr21 13722231 13722547 -31185023 - AluSq SINE Alu 0 313 1 374 295 36 0 chr21 13722574 13722686 -31184884 - MIR SINE MIR -37 225 110 23 33 0 0 chr21 13723767 13723797 -31183773 + AT_rich Low_complexity Low_complexity 1 30 0 664 347 108 27 chr21 13723895 13724414 -31183156 + L2 LINE L2 2297 2857 -457 1754 174 110 62 chr21 13725743 13726181 -31181389 + MLT1C LTR MaLR 1 459 -8 304 243 169 7 chr21 13727489 13727625 -31179945 - L1ME4a LINE L1 -4 6117 5960 29 18 0 55 chr21 13728238 13728293 -31179277 + AT_rich Low_complexity Low_complexity 1 52 0 252 279 132 0 chr21 13728489 13728618 -31178952 - L1ME4a LINE L1 -179 5942 5797 668 274 67 18 chr21 13728657 13728880 -31178690 + MIR SINE MIR 1 234 -28 569 282 102 9 chr21 13728922 13729138 -31178432 + MIR SINE MIR 14 249 -13 191 182 0 91 chr21 13729164 13729208 -31178362 + MIR SINE MIR 219 258 -4 2489 117 11 16 chr21 13729573 13729950 -31177620 + THE1C LTR MaLR 1 375 0 243 0 0 0 chr21 13729996 13730023 -31177547 + (TG)n Simple_repeat Simple_repeat 2 28 0 467 276 76 0 chr21 13730710 13730855 -31176715 + MIR SINE MIR 14 169 -93 2062 136 0 3 chr21 13731073 13731375 -31176195 - AluJb SINE Alu -1 311 11 3870 185 14 1 chr21 13731450 13732190 -31175380 + L1MB4 LINE L1 5430 6178 -2 1108 284 148 17 chr21 13732235 13732944 -31174626 - L1MC4a LINE L1 -1644 6164 5363 298 365 119 24 chr21 13736308 13736560 -31171010 - L3 LINE CR1 -7 1570 1295 435 292 82 10 chr21 13739887 13740082 -31167488 - MIR SINE MIR -14 248 40 350 354 34 6 chr21 13740682 13740860 -31166710 + HAL1 LINE L1 257 439 -2068 1987 268 86 55 chr21 13741309 13742521 -31165049 + HAL1 LINE L1 1115 2364 -143 308 305 0 19 chr21 13742650 13742755 -31164815 + GA-rich Low_complexity Low_complexity 1 103 0 3040 180 92 44 chr21 13743020 13743771 -31163799 + LTR48 LTR ERV1 1 787 0 349 374 17 17 chr21 13743960 13744075 -31163495 - MER91A DNA MER1_type -30 166 52 3526 184 36 55 chr21 13744940 13745710 -31161860 - L1MB8 LINE L1 0 6178 5431 2173 114 0 17 chr21 13745710 13746007 -31161563 - AluSx SINE Alu -20 292 1 3526 184 36 55 chr21 13746007 13746322 -31161248 - L1MB8 LINE L1 -747 5431 5112 378 358 40 10 chr21 13746526 13746727 -31160843 - MIR SINE MIR -31 231 25 336 296 44 15 chr21 13747559 13747694 -31159876 - MIR SINE MIR -70 192 54 471 271 74 52 chr21 13748788 13749113 -31158457 - LTR16A LTR ERVL -118 332 1 2521 169 15 0 chr21 13749411 13749818 -31157752 - MSTB LTR MaLR -13 413 1 251 356 11 0 chr21 13749819 13749906 -31157664 - MIR SINE MIR -56 152 65 293 140 18 0 chr21 13750758 13750815 -31156755 + (CAA)n Simple_repeat Simple_repeat 3 60 0 2586 193 130 8 chr21 13751799 13752451 -31155119 - LTR48 LTR ERV1 -45 742 11 218 191 0 24 chr21 13752561 13752603 -31154967 + L3 LINE CR1 1535 1575 -2 184 333 0 0 chr21 13752754 13752799 -31154771 - L2 LINE L2 -78 3194 3150 222 37 0 0 chr21 13753232 13753259 -31154311 + (T)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr21 13754503 13754526 -31153044 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 13755395 13755416 -31152154 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 13756350 13756374 -31151196 + AT_rich Low_complexity Low_complexity 1 24 0 236 62 0 62 chr21 13756961 13757009 -31150561 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 213 311 92 8 chr21 13757369 13757488 -31150082 + L2 LINE L2 3178 3306 -7 2276 98 0 3 chr21 13760180 13760475 -31147095 + AluSq SINE Alu 1 294 -19 650 285 104 31 chr21 13763878 13764232 -31143338 - LTR33 LTR ERVL -11 510 131 356 186 0 0 chr21 13764439 13764498 -31143072 + MLT1B LTR MaLR 1 59 -408 888 211 0 6 chr21 13764499 13764679 -31142891 + MLT1B LTR MaLR 212 390 0 2223 109 7 0 chr21 13764845 13765148 -31142422 - AluSp SINE Alu -7 306 2 264 231 55 11 chr21 13765293 13765384 -31142186 - HAL1 LINE L1 -901 1606 1512 531 271 99 28 chr21 13765523 13765807 -31141763 - L1MEd LINE L1 -4912 1207 904 34 102 0 0 chr21 13765880 13765998 -31141572 + AT_rich Low_complexity Low_complexity 1 118 0 347 323 15 57 chr21 13766018 13766281 -31141289 - L1MEd LINE L1 -5298 821 570 4324 181 19 18 chr21 13766358 13766512 -31141058 - L1MB5 LINE L1 0 6174 6022 2571 118 5 3 chr21 13766512 13766886 -31140684 + THE1C LTR MaLR 1 375 0 4324 181 19 18 chr21 13766886 13767586 -31139984 - L1MB5 LINE L1 -152 6022 5319 * 22865 145 10 11 chr21 13767582 13772480 -31135090 - L1PA10 LINE L1 -1 6482 1590 2870 82 30 8 chr21 13772480 13772883 -31134687 + MLT2A1 LTR ERVL 3 480 -35 200 216 0 0 chr21 13772901 13772938 -31134632 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 345 59 78 0 chr21 13772938 13772989 -31134581 + MLT2A2 LTR ERVL 399 453 0 4450 232 44 36 chr21 13772990 13774561 -31133009 - L1PA10 LINE L1 -4736 1139 3 3477 241 36 8 chr21 13774558 13775580 -31131990 - L1MB5 LINE L1 -820 5326 4276 * 189 0 0 0 chr21 13777049 13777070 -31130500 + (T)n Simple_repeat Simple_repeat 1 21 0 270 278 10 21 chr21 13778635 13778732 -31128838 + 7SK RNA RNA 1 96 -97 446 254 8 62 chr21 13779013 13779143 -31128427 + L2 LINE L2 3150 3272 0 10572 119 29 3 chr21 13780298 13782708 -31124862 + L1PA8 LINE L1 3721 6169 -3 990 190 60 154 chr21 13782721 13782820 -31124750 + MLT1A1 LTR MaLR 1 108 -257 2051 138 36 36 chr21 13782820 13783182 -31124388 + THE1B LTR MaLR 3 364 0 990 190 60 154 chr21 13783182 13783518 -31124052 + MLT1A1 LTR MaLR 108 364 -1 2658 161 16 2 chr21 13783737 13784166 -31123404 - MSTB2 LTR MaLR 0 457 23 80 11 0 0 chr21 13784234 13784321 -31123249 + AT_rich Low_complexity Low_complexity 1 87 0 371 308 126 0 chr21 13784978 13785160 -31122410 - MIR SINE MIR -11 251 47 845 199 11 6 chr21 13785849 13786030 -31121540 + MER53 DNA DNA 8 189 0 201 175 0 0 chr21 13786559 13786599 -31120971 + (CA)n Simple_repeat Simple_repeat 2 41 0 254 286 105 0 chr21 13786623 13786756 -31120814 + L1ME4a LINE L1 5969 6115 -6 359 336 61 23 chr21 13786883 13787014 -31120556 + L2 LINE L2 3136 3271 -1 2243 121 10 0 chr21 13787729 13788035 -31119535 + AluSg SINE Alu 1 309 -1 351 0 0 0 chr21 13788520 13788559 -31119011 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr21 13788558 13788579 -31118991 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 351 0 0 0 chr21 13789387 13789426 -31118144 + (CA)n Simple_repeat Simple_repeat 2 40 0 188 204 82 20 chr21 13789677 13789726 -31117844 + L2 LINE L2 3220 3271 -1 893 254 225 19 chr21 13790218 13790636 -31116934 - MLT1D LTR MaLR -1 504 1 887 225 38 9 chr21 13790802 13791015 -31116555 - MER20 DNA MER1_type 0 219 1 24 32 0 0 chr21 13791119 13791150 -31116420 + AT_rich Low_complexity Low_complexity 1 31 0 2143 129 0 0 chr21 13791839 13792134 -31115436 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr21 13792134 13792173 -31115397 + AT_rich Low_complexity Low_complexity 1 39 0 491 277 38 19 chr21 13792221 13792380 -31115190 + MARNA DNA Mariner 403 564 -22 716 279 158 0 chr21 13792538 13792760 -31114810 + MIR SINE MIR 3 259 -3 25 51 0 0 chr21 13793557 13793596 -31113974 + AT_rich Low_complexity Low_complexity 1 39 0 3230 229 21 44 chr21 13794258 13795191 -31112379 + L1ME1 LINE L1 5248 6162 -4 383 253 18 72 chr21 13795412 13795448 -31112122 - MLT1J2 LTR MaLR 0 450 414 2190 126 29 27 chr21 13795448 13795822 -31111748 - THE1C LTR MaLR 0 375 1 383 253 18 72 chr21 13795822 13795951 -31111619 - MLT1J2 LTR MaLR -36 414 294 390 271 0 58 chr21 13797338 13797493 -31110077 - MER117 DNA MER1_type -47 150 5 206 280 27 27 chr21 13797631 13797706 -31109864 - L2 LINE L2 -12 3260 3186 688 321 92 53 chr21 13797809 13798515 -31109055 + L2 LINE L2 2544 3267 -5 226 235 24 71 chr21 13798536 13798621 -31108949 - L2 LINE L2 -65 3248 3168 2188 109 0 0 chr21 13799116 13799410 -31108160 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr21 13799849 13799871 -31107699 + AT_rich Low_complexity Low_complexity 1 22 0 240 333 73 21 chr21 13800488 13800584 -31106986 + MIR SINE MIR 22 122 -140 233 326 0 45 chr21 13801534 13801623 -31105947 - L2 LINE L2 -2 3311 3227 458 252 58 0 chr21 13801699 13801802 -31105768 + MER81 DNA DNA 1 109 -5 23 0 0 0 chr21 13802430 13802453 -31105117 + AT_rich Low_complexity Low_complexity 1 23 0 2585 190 42 2 chr21 13802466 13802965 -31104605 + LTR53 LTR ERVL 1 519 0 214 250 50 100 chr21 13803549 13803649 -31103921 - MIR3 SINE MIR 0 208 114 555 252 0 0 chr21 13804311 13804470 -31103100 + (CA)n Simple_repeat Simple_repeat 2 160 0 344 368 0 31 chr21 13805966 13806129 -31101441 - MIR SINE MIR -60 202 45 1022 225 198 65 chr21 13806131 13806626 -31100944 - MLT1E LTR MaLR -8 585 1 27 29 0 0 chr21 13806635 13806669 -31100901 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 13806941 13806969 -31100601 + AT_rich Low_complexity Low_complexity 1 28 0 278 0 54 0 chr21 13807030 13807067 -31100503 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 183 42 0 0 chr21 13807573 13807597 -31099973 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1933 230 34 53 chr21 13807697 13808255 -31099315 - MER77 LTR ERV1 -4 566 53 305 233 23 12 chr21 13808624 13808710 -31098860 - LTR16C LTR ERVL 0 491 405 319 291 146 51 chr21 13809140 13809298 -31098272 - MER5A DNA MER1_type 0 189 17 455 307 21 0 chr21 13809578 13809718 -31097852 - MIR SINE MIR -11 251 109 275 266 0 0 chr21 13810001 13810065 -31097505 - MIR SINE MIR -12 250 187 1642 164 3 72 chr21 13810150 13810485 -31097085 + AluJb SINE Alu 1 312 0 276 286 41 31 chr21 13813403 13813501 -31094069 - MIR3 SINE MIR -6 202 104 364 307 58 22 chr21 13814236 13814373 -31093197 + L2 LINE L2 3125 3266 -6 202 293 67 13 chr21 13814382 13814457 -31093113 + L2 LINE L2 3145 3223 -49 194 342 125 8 chr21 13815918 13816038 -31091532 + L2 LINE L2 2610 2743 -571 351 301 49 25 chr21 13816836 13816999 -31090571 + L1 LINE L1 4891 5057 -1089 955 191 11 6 chr21 13818179 13818357 -31089213 - MER58A DNA MER1_type 0 224 46 948 305 61 27 chr21 13819278 13819917 -31087653 - L2 LINE L2 -5 3308 2636 1187 212 59 28 chr21 13819917 13820271 -31087299 - MLT1A1 LTR MaLR 0 365 1 948 305 61 27 chr21 13820271 13820376 -31087194 - L2 LINE L2 -677 2636 2536 21 71 0 0 chr21 13820757 13820799 -31086771 + AT_rich Low_complexity Low_complexity 1 42 0 930 259 102 99 chr21 13820826 13821392 -31086178 - MLT1F1 LTR MaLR 0 567 2 4386 152 57 10 chr21 13822014 13822543 -31085027 - L1MB2 LINE L1 -3 6168 5586 1914 139 30 3 chr21 13822543 13822838 -31084732 - AluSx SINE Alu -9 303 1 4386 152 57 10 chr21 13822838 13823122 -31084448 - L1MB2 LINE L1 -585 5586 5317 468 86 0 74 chr21 13823150 13823175 -31084395 - L1PB4 LINE L1 -1 6155 6130 2113 145 112 20 chr21 13823175 13823567 -31084003 + MSTA LTR MaLR 1 428 0 468 86 0 74 chr21 13823567 13823622 -31083948 - L1PB4 LINE L1 -26 6130 6081 727 167 21 62 chr21 13823622 13823814 -31083756 - L1MB2 LINE L1 -815 5331 5148 23 0 0 0 chr21 13824180 13824203 -31083367 + AT_rich Low_complexity Low_complexity 1 23 0 325 332 92 89 chr21 13824678 13824949 -31082621 - L2 LINE L2 -23 3249 2978 219 341 54 51 chr21 13824986 13825300 -31082270 - L2 LINE L2 -349 2965 2651 1493 142 15 192 chr21 13825302 13825781 -31081789 + MSTD LTR MaLR 3 396 0 322 334 236 28 chr21 13825958 13827775 -31079795 - L2 LINE L2 -911 2403 210 1008 140 28 0 chr21 13827783 13827962 -31079608 + L1MA5A LINE L1 6110 6293 -4 189 0 0 0 chr21 13827962 13827983 -31079587 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 632 231 113 27 chr21 13828741 13828927 -31078643 - MER5C DNA MER1_type -122 202 1 21 36 0 0 chr21 13830074 13830102 -31077468 + AT_rich Low_complexity Low_complexity 1 28 0 247 266 165 0 chr21 13830215 13830294 -31077276 - L2 LINE L2 -1 3312 3221 25 51 0 0 chr21 13831751 13831790 -31075780 + AT_rich Low_complexity Low_complexity 1 39 0 209 288 0 38 chr21 13831805 13831885 -31075685 + GA-rich Low_complexity Low_complexity 3 79 0 186 219 48 105 chr21 13831947 13832052 -31075518 + L2 LINE L2 2545 2643 -671 27 49 0 0 chr21 13833537 13833578 -31073992 + AT_rich Low_complexity Low_complexity 1 41 0 210 71 0 0 chr21 13833951 13833979 -31073591 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 342 233 133 0 chr21 13834505 13834625 -31072945 + L1ME3 LINE L1 6025 6160 -2 1348 13 0 0 chr21 13835756 13835910 -31071660 + L1PA5 LINE L1 5990 6143 -11 279 0 0 0 chr21 13835911 13835942 -31071628 + (TA)n Simple_repeat Simple_repeat 2 32 0 743 260 40 9 chr21 13836153 13836380 -31071190 + L1ME LINE L1 5545 5778 -343 2387 120 10 34 chr21 13836731 13837115 -31070455 - THE1C LTR MaLR 0 375 1 458 61 15 0 chr21 13837185 13837251 -31070319 + (TG)n Simple_repeat Simple_repeat 2 68 0 1602 123 4 4 chr21 13837662 13837889 -31069681 + AluSg/x SINE Alu 74 300 -12 7048 172 19 19 chr21 13838967 13840208 -31067362 - MER52A LTR ERV1 0 1755 515 783 256 45 10 chr21 13840244 13840443 -31067127 - MLT1A1 LTR MaLR -156 209 4 21 0 0 0 chr21 13840615 13840636 -31066934 + AT_rich Low_complexity Low_complexity 1 21 0 1266 180 66 11 chr21 13841343 13841615 -31065955 + LTR1 LTR ERV1 1 287 -498 2672 97 24 0 chr21 13841620 13841990 -31065580 + LTR1 LTR ERV1 407 785 0 21 36 0 0 chr21 13845224 13845252 -31062318 + AT_rich Low_complexity Low_complexity 1 28 0 444 310 84 0 chr21 13846038 13846193 -31061377 + MIR3 SINE MIR 40 207 -1 300 170 34 131 chr21 13846759 13846897 -31060673 + L1MC4a LINE L1 1001 1136 -5406 * 382 284 29 60 chr21 13846889 13847013 -31060557 + L1MC4a LINE L1 2393 2519 -4125 1849 174 0 6 chr21 13847013 13847324 -31060246 + AluSx SINE Alu 1 309 -3 382 284 29 60 chr21 13847324 13847630 -31059940 + L1MC4a LINE L1 2519 2762 -3882 1844 126 41 80 chr21 13847655 13848044 -31059526 + THE1C LTR MaLR 2 375 0 628 204 112 5 chr21 13848068 13848264 -31059306 - L1M4 LINE L1 -820 5326 5110 2304 241 67 23 chr21 13848304 13848514 -31059056 + L1ME1 LINE L1 5406 5605 -561 1463 178 68 44 chr21 13848514 13848880 -31058690 + THE1C LTR MaLR 1 375 0 2304 241 67 23 chr21 13848880 13849398 -31058172 + L1ME1 LINE L1 5605 6166 0 779 249 85 107 chr21 13849586 13850043 -31057527 - MER68 LTR ERV1 -114 448 2 313 322 66 7 chr21 13850130 13850282 -31057288 + LTR50 LTR ERVL 462 622 -173 491 304 96 5 chr21 13850739 13850959 -31056611 + L1MC4a LINE L1 4495 4734 -1910 189 0 0 0 chr21 13851836 13851857 -31055713 + (TA)n Simple_repeat Simple_repeat 1 21 0 2312 236 101 20 chr21 13851953 13852689 -31054881 - LTR50 LTR ERVL 0 795 1 28 48 0 0 chr21 13853143 13853185 -31054385 + AT_rich Low_complexity Low_complexity 1 42 0 1173 150 35 0 chr21 13853296 13853496 -31054074 - L1PA12 LINE L1 -1 6167 5961 324 270 94 61 chr21 13853588 13853871 -31053699 + L1MC4a LINE L1 6065 6354 -271 218 182 23 0 chr21 13853878 13853922 -31053648 - L2 LINE L2 0 3272 3228 204 40 0 0 chr21 13853990 13854015 -31053555 + (CA)n Simple_repeat Simple_repeat 2 26 0 392 315 112 16 chr21 13854870 13855145 -31052425 + L1ME LINE L1 5481 5711 -410 485 292 164 38 chr21 13855169 13855629 -31051941 + L2 LINE L2 2766 3301 -12 557 271 39 72 chr21 13855982 13856189 -31051381 - MIR SINE MIR 0 262 63 194 227 0 15 chr21 13856189 13856255 -31051315 + GA-rich Low_complexity Low_complexity 3 67 0 311 275 28 37 chr21 13856255 13856364 -31051206 - Tigger8 DNA MER2_type -538 128 21 189 289 0 0 chr21 13858118 13858163 -31049407 - MIR SINE MIR 0 262 218 433 304 83 30 chr21 13858173 13858403 -31049167 - L2 LINE L2 -1375 1939 1698 228 35 0 0 chr21 13858403 13858432 -31049138 + (T)n Simple_repeat Simple_repeat 1 29 0 195 377 127 8 chr21 13858563 13858815 -31048755 + L2 LINE L2 2256 2537 -777 4763 91 20 0 chr21 13858823 13859486 -31048084 + L1PA10 LINE L1 5488 6163 -5 414 293 134 0 chr21 13859576 13859740 -31047830 - LTR33A LTR ERVL -2 521 336 738 201 104 0 chr21 13859764 13859928 -31047642 + MER63A DNA MER1_type 1 181 -29 473 289 70 47 chr21 13859943 13860199 -31047371 - LTR33A LTR ERVL -255 268 7 213 292 15 15 chr21 13860288 13860353 -31047217 + L2 LINE L2 3208 3272 0 736 236 30 0 chr21 13860970 13861135 -31046435 - MER67A LTR ERV1 0 543 374 6051 213 82 12 chr21 13861135 13861597 -31045973 + L1MA3 LINE L1 18 446 -7119 2149 117 0 10 chr21 13861597 13861896 -31045674 - AluSq SINE Alu -17 296 1 6051 213 82 12 chr21 13861896 13862724 -31044846 + L1MA3 LINE L1 446 1337 -6228 * 10978 151 22 6 chr21 13862710 13865376 -31042194 + L1MA3 LINE L1 4674 7383 -341 755 291 148 12 chr21 13865675 13866012 -31041558 + L1MC/D LINE L1 5255 5637 -2171 1304 160 111 125 chr21 13867409 13867921 -31039649 - MLT1D LTR MaLR 0 505 1 405 267 0 0 chr21 13868057 13868143 -31039427 - MER58B DNA MER1_type 0 341 256 1746 222 64 35 chr21 13868146 13868632 -31038938 - MLT1D LTR MaLR -5 500 1 489 71 12 59 chr21 13868762 13868847 -31038723 - L1PA11 LINE L1 0 6174 6094 573 271 162 25 chr21 13869666 13869907 -31037663 - LTR50 LTR ERVL -2 793 586 1330 192 34 44 chr21 13869907 13870204 -31037366 - AluJo SINE Alu -17 295 2 573 271 162 25 chr21 13870204 13870516 -31037054 - LTR50 LTR ERVL -209 586 53 1333 99 6 0 chr21 13870621 13870793 -31036777 + AluSq SINE Alu 1 173 -140 23 0 0 0 chr21 13871682 13871705 -31035865 + AT_rich Low_complexity Low_complexity 1 23 0 286 75 0 0 chr21 13871907 13871947 -31035623 - L1PA3 LINE L1 -2702 3444 3405 16458 21 0 0 chr21 13871947 13874630 -31032940 + L1PA3 LINE L1 3468 6150 -5 1764 164 94 79 chr21 13875145 13875570 -31032000 + MER34C LTR ERV1 36 472 -113 3035 157 33 62 chr21 13875570 13876200 -31031370 + LTR9 LTR ERV1 1 612 0 1764 164 94 79 chr21 13876200 13876316 -31031254 + MER34C LTR ERV1 472 585 0 2373 122 145 94 chr21 13876518 13877147 -31030423 - MER4A LTR ERV1 -3 661 1 1569 290 20 46 chr21 13877334 13877570 -31030000 + MLT2F LTR ERVL 1 242 -421 1389 234 102 46 chr21 13877570 13878180 -31029390 - LTR48B LTR ERV1 0 644 1 1569 290 20 46 chr21 13878180 13878547 -31029023 + MLT2F LTR ERVL 242 588 -75 2247 214 48 28 chr21 13878577 13879248 -31028322 - MER21B LTR ERV1 -4 859 127 373 267 21 17 chr21 13879240 13879395 -31028175 - MER21B LTR ERV1 -400 205 11 * 27 0 0 0 chr21 13879472 13879499 -31028071 + AT_rich Low_complexity Low_complexity 1 27 0 1463 172 11 15 chr21 13879544 13879806 -31027764 - MLT1B LTR MaLR 0 390 130 1426 206 58 7 chr21 13879812 13880186 -31027384 + LTR32 LTR ERVL 17 471 0 599 172 82 0 chr21 13880186 13880306 -31027264 - MLT1B LTR MaLR -260 130 1 346 221 14 90 chr21 13880424 13880569 -31027001 + MER94 DNA DNA 1 134 0 314 380 4 52 chr21 13880570 13880799 -31026771 - L2 LINE L2 -219 3053 2836 1696 204 93 80 chr21 13881301 13882074 -31025496 + L1MC5 LINE L1 6858 7640 -321 228 318 22 73 chr21 13882109 13882243 -31025327 - L2 LINE L2 -1018 2296 2172 827 190 76 47 chr21 13882243 13882454 -31025116 - MER20 DNA MER1_type -2 217 1 228 318 22 73 chr21 13882454 13882498 -31025072 - L2 LINE L2 -1142 2172 2127 196 333 104 0 chr21 13882547 13882643 -31024927 + MIR SINE MIR 107 212 -50 1765 181 29 39 chr21 13883229 13883643 -31023927 - L1MB7 LINE L1 -9 6175 5766 1088 236 101 0 chr21 13883643 13883910 -31023660 + MLT1E LTR MaLR 300 593 0 390 42 0 0 chr21 13883933 13883981 -31023589 + (TG)n Simple_repeat Simple_repeat 1 48 0 1477 185 120 43 chr21 13885561 13885929 -31021641 - MSTD LTR MaLR 0 396 1 214 341 114 36 chr21 13885930 13886097 -31021473 - MER5A DNA MER1_type -7 182 3 222 226 20 20 chr21 13886766 13886868 -31020702 + CT-rich Low_complexity Low_complexity 4 105 0 1906 98 33 4 chr21 13887461 13887737 -31019833 + L1PA11 LINE L1 5884 6167 -7 24 0 0 0 chr21 13887778 13887802 -31019768 + AT_rich Low_complexity Low_complexity 1 24 0 249 362 43 0 chr21 13887996 13888134 -31019436 + HAL1b LINE L1 379 522 -826 2442 61 0 0 chr21 13888162 13888456 -31019114 + AluSp SINE Alu 18 311 -2 736 293 44 20 chr21 13888572 13888821 -31018749 - MIR SINE MIR -1 261 7 2859 140 29 2 chr21 13888959 13889451 -31018119 + L1MA9 LINE L1 5808 6312 0 1278 157 5 0 chr21 13889838 13890042 -31017528 + MER2 DNA MER2_type 2 206 -139 27 0 0 0 chr21 13890050 13890077 -31017493 + AT_rich Low_complexity Low_complexity 1 27 0 394 306 126 44 chr21 13890208 13890414 -31017156 + MIR SINE MIR 14 236 -26 267 31 0 0 chr21 13890446 13890478 -31017092 + (TA)n Simple_repeat Simple_repeat 2 33 0 2967 231 82 36 chr21 13890816 13891921 -31015649 + L1ME3A LINE L1 5022 6170 0 21 36 0 0 chr21 13892081 13892109 -31015461 + AT_rich Low_complexity Low_complexity 1 28 0 904 241 54 5 chr21 13892252 13892455 -31015115 - MER20 DNA MER1_type 0 219 7 683 199 137 5 chr21 13892873 13893089 -31014481 - MER33 DNA MER1_type -248 76 1 291 218 36 45 chr21 13893193 13893303 -31014267 + L1M4 LINE L1 3717 3825 -2321 1883 150 44 0 chr21 13893421 13893715 -31013855 - AluSx SINE Alu -3 309 3 25 0 0 0 chr21 13893884 13893909 -31013661 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 13894009 13894044 -31013526 + AT_rich Low_complexity Low_complexity 1 35 0 3307 92 20 2 chr21 13894257 13894702 -31012868 + MLT2A2 LTR ERVL 1 453 0 41668 80 17 19 chr21 13894702 13900369 -31007201 + HERVL-A2 LTR ERVL 1 5654 0 2882 92 37 48 chr21 13900370 13900827 -31006743 + MLT2A2 LTR ERVL 2 453 0 281 209 0 0 chr21 13900851 13900918 -31006652 + L1ME LINE L1 5771 5837 -284 183 139 0 0 chr21 13901236 13901272 -31006298 + (T)n Simple_repeat Simple_repeat 1 36 0 222 339 104 37 chr21 13901364 13901510 -31006060 + L2 LINE L2 2417 2552 -762 3839 145 34 32 chr21 13901510 13902226 -31005344 - LTR62 LTR ERVK 0 719 3 222 339 104 37 chr21 13902226 13902377 -31005193 + L2 LINE L2 2552 2734 -580 232 336 26 17 chr21 13902898 13903014 -31004556 + L2 LINE L2 2935 3051 -221 2543 72 0 0 chr21 13903203 13903510 -31004060 + AluY SINE Alu 3 309 -2 375 113 0 0 chr21 13903707 13903769 -31003801 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 233 289 79 13 chr21 13904136 13904212 -31003358 + L2 LINE L2 3150 3230 -42 272 296 9 28 chr21 13904764 13904872 -31002698 + LTR48B LTR ERV1 1 106 -538 * 1444 202 63 95 chr21 13904857 13905211 -31002359 + MER39 LTR ERV1 219 554 -153 2192 136 0 0 chr21 13905211 13905520 -31002050 - AluSx SINE Alu -1 311 3 1444 202 63 95 chr21 13905520 13905670 -31001900 + MER39 LTR ERV1 554 707 0 184 344 111 0 chr21 13906204 13906294 -31001276 + MIR SINE MIR 36 135 -73 1657 199 0 7 chr21 13906443 13906750 -31000820 - AluJb SINE Alu -7 305 1 200 287 209 17 chr21 13907558 13907673 -30999897 + MIR3 SINE MIR 3 139 -69 1813 144 23 30 chr21 13907861 13908166 -30999404 - AluSx SINE Alu -9 303 1 1842 127 65 4 chr21 13908650 13908926 -30998644 - AluSx SINE Alu -19 293 1 224 371 103 38 chr21 13909119 13909332 -30998238 - MIR SINE MIR -17 245 19 189 0 0 0 chr21 13909405 13909426 -30998144 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1890 146 11 0 chr21 13909426 13909701 -30997869 - AluSq SINE Alu -32 281 4 209 339 39 24 chr21 13909868 13909995 -30997575 - MIR SINE MIR -123 139 11 21 36 0 0 chr21 13910018 13910046 -30997524 + AT_rich Low_complexity Low_complexity 1 28 0 884 245 67 46 chr21 13911061 13911432 -30996138 + MER39 LTR ERV1 67 609 -98 9855 135 12 21 chr21 13911433 13914173 -30993397 + L1MA1 LINE L1 3579 6295 -7 371 212 59 25 chr21 13914181 13914299 -30993271 + MER39 LTR ERV1 586 707 0 226 355 65 0 chr21 13914320 13914413 -30993157 + L2 LINE L2 3174 3272 0 2288 79 3 22 chr21 13914568 13914911 -30992659 - AluY SINE Alu 0 337 1 6178 80 0 5 chr21 13914935 13915281 -30992289 - L1PB1 LINE L1 0 6151 5805 327 85 0 0 chr21 13915281 13915328 -30992242 + (TG)n Simple_repeat Simple_repeat 1 47 0 6178 80 0 5 chr21 13915328 13915929 -30991641 - L1PB1 LINE L1 -346 5805 5187 1373 247 9 0 chr21 13915934 13916278 -30991292 + L1PB1 LINE L1 4833 5179 -967 190 286 122 20 chr21 13916300 13916398 -30991172 + MIR SINE MIR 39 146 -62 1231 174 37 30 chr21 13916400 13916670 -30990900 + MLT2D LTR ERVL 1 272 -142 667 250 143 10 chr21 13916726 13916922 -30990648 - MLT1H LTR MaLR -327 222 1 30 45 0 0 chr21 13918364 13918408 -30989162 + AT_rich Low_complexity Low_complexity 1 44 0 2312 163 32 12 chr21 13919183 13919589 -30987981 + MLT2C2 LTR ERVL 3 416 -48 348 43 0 0 chr21 13919594 13919640 -30987930 + (TC)n Simple_repeat Simple_repeat 1 46 0 453 19 0 0 chr21 13919640 13919694 -30987876 + (TG)n Simple_repeat Simple_repeat 2 55 0 367 216 0 43 chr21 13923646 13923831 -30983739 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 67 55 0 0 chr21 13923838 13923947 -30983623 + AT_rich Low_complexity Low_complexity 1 109 0 960 143 87 6 chr21 13923947 13924108 -30983462 - AluSq SINE Alu -138 175 2 10483 198 65 26 chr21 13924496 13926671 -30980899 + L1MC1 LINE L1 24 2114 -4499 890 267 8 102 chr21 13926671 13927072 -30980498 + MLT1A1 LTR MaLR 1 363 -2 10483 198 65 26 chr21 13927072 13928236 -30979334 + L1MC1 LINE L1 2114 3232 -3381 2516 50 0 0 chr21 13928236 13928536 -30979034 + AluY SINE Alu 2 301 -10 10483 198 65 26 chr21 13928536 13930303 -30977267 + L1MC1 LINE L1 3232 4930 -1683 1299 142 41 5 chr21 13930303 13930522 -30977048 - MER30 DNA MER1_type -1 229 3 10483 198 65 26 chr21 13930522 13931102 -30976468 + L1MC1 LINE L1 4930 5486 -1127 2877 177 60 6 chr21 13931102 13931581 -30975989 + MLT2B3 LTR ERVL 3 514 -40 723 10 31 0 chr21 13931581 13931677 -30975893 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 2877 177 60 6 chr21 13931677 13931718 -30975852 + MLT2B3 LTR ERVL 514 551 -3 10483 198 65 26 chr21 13931718 13932024 -30975546 + L1MC1 LINE L1 5486 6255 -358 593 200 0 0 chr21 13932025 13932130 -30975440 + U6 snRNA snRNA 2 106 -1 1084 164 9 37 chr21 13932135 13932349 -30975221 + L1MC1 LINE L1 6396 6603 -10 22 0 0 0 chr21 13932355 13932377 -30975193 + AT_rich Low_complexity Low_complexity 1 22 0 211 196 87 0 chr21 13933183 13933229 -30974341 + L2 LINE L2 3263 3312 -1 222 347 32 0 chr21 13933707 13933812 -30973758 + MIR SINE MIR 34 141 -67 1834 178 0 13 chr21 13935069 13935373 -30972197 - AluJo SINE Alu -12 300 1 314 352 80 5 chr21 13935430 13935629 -30971941 - MIR SINE MIR -2 260 47 2270 111 0 13 chr21 13936777 13937093 -30970477 - AluSx SINE Alu 0 312 1 2198 100 0 0 chr21 13937177 13937466 -30970104 - AluSc SINE Alu 0 309 21 322 319 0 18 chr21 13937504 13937617 -30969953 - MER34 LTR ERV1 -431 111 1 1997 174 11 19 chr21 13938619 13938987 -30968583 - MLT1A1 LTR MaLR 0 365 1 470 321 190 5 chr21 13940667 13940888 -30966682 - MIR SINE MIR 0 262 1 2213 111 74 11 chr21 13941003 13941356 -30966214 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr21 13941604 13941632 -30965938 + AT_rich Low_complexity Low_complexity 1 28 0 1626 184 0 14 chr21 13943045 13943327 -30964243 + AluJb SINE Alu 1 278 -34 393 149 0 0 chr21 13943327 13943394 -30964176 + (CA)n Simple_repeat Simple_repeat 2 68 0 351 113 0 0 chr21 13943397 13943450 -30964120 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 281 280 160 0 chr21 13943606 13943706 -30963864 + MIR SINE MIR 72 187 -75 25 65 0 0 chr21 13944299 13944345 -30963225 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 13944709 13944731 -30962839 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr21 13946195 13946234 -30961336 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 393 39 0 0 chr21 13946233 13946284 -30961286 + (GA)n Simple_repeat Simple_repeat 2 52 0 423 0 0 0 chr21 13946995 13947042 -30960528 + (TG)n Simple_repeat Simple_repeat 1 47 0 2153 135 0 0 chr21 13947366 13947670 -30959900 + AluSx SINE Alu 1 304 -8 4524 158 38 11 chr21 13947969 13948934 -30958636 + L1MB3 LINE L1 5115 6101 -82 864 146 0 0 chr21 13948934 13949064 -30958506 + FRAM SINE Alu 28 157 -19 23 42 0 21 chr21 13949064 13949075 -30958495 + AT_rich Low_complexity Low_complexity 1 11 -36 402 143 71 0 chr21 13949075 13949159 -30958411 + L1MB3 LINE L1 6094 6183 0 23 42 0 21 chr21 13949159 13949195 -30958375 + AT_rich Low_complexity Low_complexity 11 47 0 1855 143 161 11 chr21 13951148 13951520 -30956050 - MSTA LTR MaLR 0 428 1 289 349 18 9 chr21 13951547 13951656 -30955914 - L3 LINE CR1 -30 1547 1438 22179 73 6 1 chr21 13951733 13954573 -30952997 - HERVL-A1 LTR ERVL -2798 2856 3 2864 86 19 62 chr21 13954575 13955039 -30952531 - MLT2A1 LTR ERVL 0 444 1 883 103 15 0 chr21 13955070 13955206 -30952364 - L1MB7 LINE L1 -9 6175 6038 3209 126 68 18 chr21 13956342 13956889 -30950681 + MER4B LTR ERV1 37 610 0 196 333 0 0 chr21 13957529 13957589 -30949981 - L2 LINE L2 0 3272 3213 1955 141 0 0 chr21 13958034 13958360 -30949210 - AluJb SINE Alu 0 326 1 960 88 13 6 chr21 13958440 13958599 -30948971 + (TTCC)n Simple_repeat Simple_repeat 2 161 0 182 313 0 31 chr21 13959410 13959474 -30948096 + L3 LINE CR1 1414 1475 -102 195 156 178 0 chr21 13959972 13960017 -30947553 + MIR SINE MIR 210 262 0 508 215 209 17 chr21 13960116 13960293 -30947277 - MER112 DNA MER1_type -33 227 17 1971 205 74 13 chr21 13960669 13961143 -30946427 - MLT1D LTR MaLR 0 505 3 23 0 0 0 chr21 13962135 13962158 -30945412 + AT_rich Low_complexity Low_complexity 1 23 0 350 340 165 10 chr21 13962380 13962574 -30944996 + MIR SINE MIR 26 249 -13 1994 117 3 29 chr21 13962633 13962940 -30944630 + AluSx SINE Alu 7 305 -7 2236 96 3 0 chr21 13963104 13963397 -30944173 - AluY SINE Alu -17 294 1 232 320 40 0 chr21 13963470 13963595 -30943975 + L1ME3 LINE L1 4908 5037 -1109 208 209 23 0 chr21 13963602 13963645 -30943925 + (TA)n Simple_repeat Simple_repeat 2 45 0 257 236 28 0 chr21 13963646 13963718 -30943852 + L1MD3 LINE L1 7030 7103 -892 236 231 128 86 chr21 13963718 13963835 -30943735 + MLT1F1 LTR MaLR 10 131 -436 2313 229 31 9 chr21 13963835 13964407 -30943163 + L1MD3 LINE L1 7411 7995 0 2298 78 7 3 chr21 13964448 13964743 -30942827 - AluY SINE Alu -15 296 1 302 267 30 30 chr21 13964804 13964935 -30942635 + L1ME3 LINE L1 5121 5251 -895 807 294 115 20 chr21 13964956 13965555 -30942015 + L1ME3 LINE L1 5296 5951 -211 1984 168 11 38 chr21 13965592 13965961 -30941609 + MLT1A1 LTR MaLR 1 359 -6 181 300 153 60 chr21 13966816 13966966 -30940604 - L2 LINE L2 -620 2694 2531 262 326 89 37 chr21 13968107 13968242 -30939328 + L2 LINE L2 3163 3304 -9 240 305 12 0 chr21 13969351 13969433 -30938137 + (TA)n Simple_repeat Simple_repeat 2 84 0 504 292 21 0 chr21 13969900 13970044 -30937526 + L1MEc LINE L1 1924 2070 -4326 2430 33 0 0 chr21 13970495 13970770 -30936800 - AluY SINE Alu -16 295 21 619 277 59 46 chr21 13972083 13972321 -30935249 - MIR SINE MIR -7 255 15 426 297 46 50 chr21 13972377 13972616 -30934954 - L1MC/D LINE L1 -2050 5758 5521 2166 125 0 0 chr21 13972944 13973248 -30934322 - AluSx SINE Alu -8 304 1 30 27 0 0 chr21 13973600 13973637 -30933933 + AT_rich Low_complexity Low_complexity 1 37 0 305 315 92 33 chr21 13973720 13973904 -30933666 - MIR SINE MIR -18 244 50 2321 61 0 0 chr21 13974085 13974364 -30933206 - AluY SINE Alu -32 279 1 3078 128 0 0 chr21 13975212 13975682 -30931888 - L1PB1 LINE L1 -4 6147 5678 1654 122 15 0 chr21 13976609 13976879 -30930691 + L1MA2 LINE L1 6031 6304 0 1134 175 41 26 chr21 13977011 13977280 -30930290 - MER97a DNA MER1_type? -191 703 431 378 0 0 0 chr21 13977284 13977326 -30930244 + (TG)n Simple_repeat Simple_repeat 2 43 0 1021 197 59 16 chr21 13977351 13977605 -30929965 - MER97c DNA MER1_type? -758 332 68 261 328 119 15 chr21 13978048 13978182 -30929388 + MIR SINE MIR 60 207 -55 1801 146 101 5 chr21 13978262 13978661 -30928909 + LTR23 LTR ERV1 1 467 0 1487 163 19 19 chr21 13979465 13979729 -30927841 + AluJo SINE Alu 6 269 -43 227 160 67 0 chr21 13979733 13979808 -30927762 + (TA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chr21 13981041 13981070 -30926500 + AT_rich Low_complexity Low_complexity 1 29 0 243 227 91 30 chr21 13981935 13982001 -30925569 - MIR SINE MIR -111 151 82 1433 172 0 104 chr21 13982004 13982342 -30925228 + AluJo SINE Alu 1 303 -9 1718 167 0 56 chr21 13982490 13982813 -30924757 + AluJo SINE Alu 1 305 -7 1976 174 40 0 chr21 13982851 13983202 -30924368 + MLT1A1 LTR MaLR 1 365 0 1198 198 28 0 chr21 13983455 13983672 -30923898 - AluJo SINE Alu -21 291 69 1542 216 0 0 chr21 13984240 13984536 -30923034 - AluJo SINE Alu -11 301 6 21 0 0 0 chr21 13985165 13985186 -30922384 + AT_rich Low_complexity Low_complexity 1 21 0 333 47 0 0 chr21 13985311 13985354 -30922216 + (CA)n Simple_repeat Simple_repeat 2 44 0 2360 77 3 19 chr21 13986671 13986981 -30920589 + AluSp SINE Alu 1 305 -8 2227 107 7 0 chr21 13987906 13988214 -30919356 - AluSx SINE Alu 0 312 3 588 332 34 25 chr21 13989173 13989619 -30917951 - MLT1K LTR MaLR -3 612 136 4665 67 17 33 chr21 13989931 13990574 -30916996 - SVA Other Other 0 1386 754 2276 70 0 14 chr21 13991243 13991554 -30916016 - AluY SINE Alu 0 307 1 1879 153 0 0 chr21 13991556 13991850 -30915720 - AluSx SINE Alu -18 294 1 1391 155 33 19 chr21 13993487 13993804 -30913766 + MLT1A1 LTR MaLR 11 365 0 573 255 2 14 chr21 13993809 13993974 -30913596 - MLT1B LTR MaLR 0 390 251 573 226 12 76 chr21 13994437 13994672 -30912898 + MLT1F LTR MaLR 1 202 -340 808 179 123 49 chr21 13994677 13994907 -30912663 + MLT1F LTR MaLR 320 540 -2 447 293 93 29 chr21 13995301 13995581 -30911989 - L1ME LINE L1 -336 5785 5488 1667 214 50 60 chr21 13995967 13996452 -30911118 + L1MC4 LINE L1 6765 7244 -798 31 0 0 0 chr21 13996524 13996555 -30911015 + AT_rich Low_complexity Low_complexity 1 31 0 333 0 0 0 chr21 13996576 13996613 -30910957 + (CA)n Simple_repeat Simple_repeat 2 38 0 1648 206 52 3 chr21 13996613 13996939 -30910631 - MLT2C1 LTR ERVL -55 342 1 1523 240 131 52 chr21 13996939 13997246 -30910324 + L1MC4 LINE L1 7257 7538 -504 2167 102 7 7 chr21 13997246 13997539 -30910031 + AluSg SINE Alu 6 298 -12 1523 240 131 52 chr21 13997539 13997947 -30909623 + L1MC4 LINE L1 7538 8029 -13 1233 183 9 9 chr21 13998436 13998666 -30908904 - AluJb SINE Alu -5 307 78 24 0 0 0 chr21 13999496 13999520 -30908050 + AT_rich Low_complexity Low_complexity 1 24 0 475 276 268 22 chr21 14000083 14000685 -30906885 + L2 LINE L2 2542 3313 0 464 306 108 52 chr21 14001326 14001806 -30905764 - L2 LINE L2 0 3313 2807 23 0 0 0 chr21 14002208 14002231 -30905339 + AT_rich Low_complexity Low_complexity 1 23 0 463 293 160 0 chr21 14002351 14002501 -30905069 + MER5A DNA MER1_type 9 182 -7 1830 207 47 51 chr21 14003108 14003615 -30903955 - MLT1D LTR MaLR 0 505 1 357 316 59 53 chr21 14004405 14004898 -30902672 + L2 LINE L2 1613 2108 -1206 1903 208 11 0 chr21 14004934 14005295 -30902275 + MLT1A1 LTR MaLR 1 365 0 306 49 0 0 chr21 14006070 14006113 -30901457 - AluS SINE Alu -218 85 49 483 101 13 0 chr21 14006784 14006863 -30900707 - MADE1 DNA Mariner 0 80 1 2148 135 0 0 chr21 14007170 14007521 -30900049 - AluSx SINE Alu 0 351 1 820 250 48 0 chr21 14007659 14007847 -30899723 + MER20 DNA MER1_type 22 218 -1 1559 208 16 13 chr21 14008172 14008536 -30899034 + AluJo SINE Alu 3 367 0 260 189 14 0 chr21 14009269 14009343 -30898227 + (CCA)n Simple_repeat Simple_repeat 1 75 0 211 267 0 0 chr21 14009368 14009413 -30898157 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4049 182 18 24 chr21 14010115 14010896 -30896674 - LTR39 LTR ERV1 -7 776 1 602 51 13 0 chr21 14010955 14011034 -30896536 - MADE1 DNA Mariner 0 80 1 5083 165 47 18 chr21 14012500 14013602 -30893968 + L1MC2 LINE L1 5200 6332 -12 274 250 36 71 chr21 14014578 14014690 -30892880 - LTR43 LTR ERV1 -313 289 182 8231 84 40 18 chr21 14014946 14016892 -30890678 + L1PA7 LINE L1 4187 6153 -1 34 24 0 0 chr21 14017058 14017099 -30890471 + AT_rich Low_complexity Low_complexity 1 41 0 2051 247 204 43 chr21 14017161 14017240 -30890330 - L2 LINE L2 -910 2404 2339 2580 98 13 16 chr21 14017240 14017616 -30889954 - THE1C LTR MaLR 0 375 1 2051 247 204 43 chr21 14017616 14018509 -30889061 - L2 LINE L2 -975 2339 1276 2481 238 54 62 chr21 14019650 14020373 -30887197 + L1MCb LINE L1 1 717 -5425 2647 146 19 9 chr21 14020373 14020797 -30886773 + MSTC LTR MaLR 1 428 0 2481 238 54 62 chr21 14020797 14021370 -30886200 + L1MCb LINE L1 717 1293 -4849 373 299 90 28 chr21 14022202 14022346 -30885224 + MER5B DNA MER1_type 26 178 0 201 39 0 0 chr21 14022414 14022440 -30885130 + (CA)n Simple_repeat Simple_repeat 2 27 0 243 125 0 0 chr21 14022440 14022480 -30885090 + (TC)n Simple_repeat Simple_repeat 1 40 0 2110 102 85 20 chr21 14022863 14023205 -30884365 + THE1B LTR MaLR 1 364 0 2925 113 7 9 chr21 14023435 14023876 -30883694 + L1PA16 LINE L1 5718 6157 -9 2101 137 0 0 chr21 14023897 14024189 -30883381 + AluSx SINE Alu 1 292 -20 246 253 0 0 chr21 14024191 14024270 -30883300 - L1MC4 LINE L1 -1350 6692 6614 333 0 0 0 chr21 14024270 14024307 -30883263 + (GA)n Simple_repeat Simple_repeat 2 38 0 699 243 90 31 chr21 14025571 14025793 -30881777 - MIR SINE MIR -10 252 18 251 337 48 0 chr21 14025788 14025871 -30881699 + MER5A DNA MER1_type 9 95 -94 * 2238 95 0 0 chr21 14026080 14026386 -30881184 + AluSx SINE Alu 2 307 0 483 156 0 0 chr21 14026400 14026477 -30881093 + U13 snRNA snRNA 1 77 -27 504 0 0 0 chr21 14026678 14026734 -30880836 + (CA)n Simple_repeat Simple_repeat 2 57 0 751 244 13 0 chr21 14026746 14026902 -30880668 - FAM SINE Alu -17 158 1 5105 146 19 3 chr21 14027856 14028712 -30878858 - L1MA4 LINE L1 -24 6276 5408 828 134 21 70 chr21 14028752 14028938 -30878632 + L1M1 LINE L1 5254 5430 -870 1747 188 7 3 chr21 14029799 14030103 -30877467 + AluJo SINE Alu 1 305 -7 1864 173 7 0 chr21 14030221 14030528 -30877042 + AluJo SINE Alu 1 309 -3 2222 113 3 3 chr21 14030670 14030979 -30876591 - AluSx SINE Alu -3 309 1 21 57 0 0 chr21 14031966 14032001 -30875569 + AT_rich Low_complexity Low_complexity 1 35 0 342 0 0 0 chr21 14032120 14032158 -30875412 + (TG)n Simple_repeat Simple_repeat 2 39 0 2405 67 3 3 chr21 14032749 14033047 -30874523 + AluSp SINE Alu 1 298 -15 211 277 32 24 chr21 14033378 14033463 -30874107 + MER5B DNA MER1_type 47 143 -46 4859 115 1 6 chr21 14035902 14036635 -30870935 + L1PA14 LINE L1 5430 6159 -2 2242 105 0 0 chr21 14036829 14037115 -30870455 - AluY SINE Alu -25 286 1 200 200 36 36 chr21 14037395 14037450 -30870120 + MIR3 SINE MIR 3 57 -151 387 229 101 80 chr21 14037510 14037698 -30869872 + MIR SINE MIR 70 261 -1 415 86 129 0 chr21 14037710 14037780 -30869790 + MADE1 DNA Mariner 2 80 0 2182 181 16 41 chr21 14037796 14037980 -30869590 + MSTB1 LTR MaLR 1 188 -244 2287 92 3 16 chr21 14037980 14038295 -30869275 - AluY SINE Alu 0 311 1 2182 181 16 41 chr21 14038295 14038553 -30869017 + MSTB1 LTR MaLR 188 432 0 23 0 0 0 chr21 14038571 14038594 -30868976 + AT_rich Low_complexity Low_complexity 1 23 0 1042 212 89 43 chr21 14039020 14039412 -30868158 - Charlie1 DNA MER1_type 0 2761 2352 2886 200 7 2 chr21 14039526 14040137 -30867433 - MSTB1-int LTR MaLR -1037 614 1 2354 142 58 22 chr21 14040137 14040554 -30867016 - MSTB1 LTR MaLR 0 432 1 500 295 74 41 chr21 14040563 14040807 -30866763 + MIR SINE MIR 2 253 -9 388 284 134 0 chr21 14041852 14041986 -30865584 - MIR SINE MIR -8 254 103 862 278 73 53 chr21 14041986 14042029 -30865541 - LTR33A LTR ERVL -4 519 478 1991 242 78 5 chr21 14042029 14042629 -30864941 + LTR48B LTR ERV1 1 644 0 862 278 73 53 chr21 14042629 14043092 -30864478 - LTR33A LTR ERVL -45 478 3 222 91 227 0 chr21 14043092 14043136 -30864434 - MIR SINE MIR -137 125 72 1666 197 31 31 chr21 14043730 14044120 -30863450 + MLT1B LTR MaLR 1 390 0 1924 130 7 7 chr21 14044462 14044761 -30862809 - AluSx SINE Alu -13 299 1 401 188 0 38 chr21 14044922 14045002 -30862568 + FLAM_A SINE Alu 17 93 -49 1635 191 14 69 chr21 14045199 14045618 -30861952 - MSTD LTR MaLR 0 396 1 343 321 175 40 chr21 14047526 14047903 -30859667 - L1M2 LINE L1 -5895 954 527 249 33 0 0 chr21 14048100 14048130 -30859440 + (CCG)n Simple_repeat Simple_repeat 3 32 0 26 30 0 0 chr21 14048245 14048278 -30859292 + GC_rich Low_complexity Low_complexity 1 33 0 267 133 0 0 chr21 14048700 14048745 -30858825 + (T)n Simple_repeat Simple_repeat 1 45 0 233 195 143 52 chr21 14049837 14049914 -30857656 - L3 LINE CR1 -2 1575 1492 24 103 0 0 chr21 14050389 14050476 -30857094 + AT_rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chr21 14050870 14050893 -30856677 + GC_rich Low_complexity Low_complexity 1 23 0 295 229 16 0 chr21 14051051 14051112 -30856458 + L2 LINE L2 3247 3308 -5 716 139 9 0 chr21 14051195 14051303 -30856267 + AluJb SINE Alu 1 109 -203 2326 88 0 10 chr21 14051304 14051611 -30855959 + AluSg SINE Alu 2 305 -5 435 295 70 62 chr21 14052619 14052860 -30854710 - MIR SINE MIR -19 243 1 27 49 0 0 chr21 14052912 14052953 -30854617 + AT_rich Low_complexity Low_complexity 1 41 0 1809 158 18 18 chr21 14052969 14053299 -30854271 - MER2 DNA MER2_type 0 345 16 360 64 0 0 chr21 14053709 14053756 -30853814 + (TG)n Simple_repeat Simple_repeat 2 48 0 1814 152 0 0 chr21 14053850 14054113 -30853457 - AluSx SINE Alu -20 292 30 40 49 0 0 chr21 14054341 14054402 -30853168 + AT_rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr21 14054577 14054605 -30852965 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 14055036 14055058 -30852512 + AT_rich Low_complexity Low_complexity 1 22 0 871 311 119 31 chr21 14055359 14055519 -30852051 - L1M4 LINE L1 -1050 5096 4952 945 172 8 107 chr21 14055519 14055781 -30851789 - MER46A DNA MER2_type 0 236 1 871 311 119 31 chr21 14055781 14056273 -30851297 - L1M4 LINE L1 -1194 4952 4386 271 234 94 23 chr21 14056291 14056419 -30851151 - L1M4 LINE L1 -1796 4350 4214 1651 195 73 25 chr21 14056440 14056876 -30850694 + LTR2B LTR ERV1 34 490 0 325 327 45 0 chr21 14056902 14057012 -30850558 - L1M4 LINE L1 -1963 4183 4069 388 319 50 7 chr21 14057868 14058009 -30849561 + MER5A DNA MER1_type 43 189 0 297 0 0 0 chr21 14058386 14058419 -30849151 + (T)n Simple_repeat Simple_repeat 1 33 0 1519 253 84 34 chr21 14058718 14059392 -30848178 - L1ME2 LINE L1 -112 6052 5348 455 298 13 0 chr21 14060455 14060606 -30846964 - MER52A LTR ERV1 0 1755 1603 589 247 20 63 chr21 14060611 14060866 -30846704 - MER52A LTR ERV1 -281 1474 1231 571 259 183 39 chr21 14060990 14061510 -30846060 - LTR28 LTR ERV1 -458 1297 16 1548 148 51 4 chr21 14062063 14062319 -30845251 - AluSx SINE Alu -5 307 40 2093 125 3 0 chr21 14062329 14062632 -30844938 - AluSq SINE Alu -9 304 1 201 175 0 0 chr21 14062775 14062815 -30844755 + CT-rich Low_complexity Low_complexity 2 41 0 1618 223 115 63 chr21 14062939 14063207 -30844363 - L1M4 LINE L1 -755 5391 5138 2455 80 3 3 chr21 14063207 14063520 -30844050 - AluSq SINE Alu 0 313 1 1618 223 115 63 chr21 14063520 14064211 -30843359 - L1M4 LINE L1 -1008 5138 4369 1624 109 0 13 chr21 14064211 14064440 -30843130 - AluSc SINE Alu -83 226 1 1618 223 115 63 chr21 14064440 14064544 -30843026 - L1M4 LINE L1 -1777 4369 4272 378 245 41 0 chr21 14064604 14064702 -30842868 - L1M4 LINE L1 -2024 4122 4021 363 271 42 28 chr21 14064789 14064933 -30842637 - L1M LINE L1 -842 5400 5255 465 229 0 0 chr21 14064951 14065047 -30842523 - Tigger7 DNA MER2_type 0 2487 2392 350 81 65 0 chr21 14065144 14065206 -30842364 - Tigger7 DNA MER2_type -79 2408 2343 586 105 70 99 chr21 14065213 14065384 -30842186 - Tigger7 DNA MER2_type -78 2509 2344 * 910 203 124 33 chr21 14065381 14065622 -30841948 - Tigger7 DNA MER2_type -287 263 1 346 324 71 13 chr21 14065622 14065847 -30841723 - L1ME2 LINE L1 -905 5241 5004 25 0 0 28 chr21 14066025 14066039 -30841531 + AT_rich Low_complexity Low_complexity 1 14 -21 1562 180 3 62 chr21 14066039 14066344 -30841226 - AluJo SINE Alu -25 287 1 25 0 0 28 chr21 14066344 14066365 -30841205 + AT_rich Low_complexity Low_complexity 14 35 0 22 0 0 0 chr21 14066757 14066779 -30840791 + AT_rich Low_complexity Low_complexity 1 22 0 752 208 105 82 chr21 14067627 14067921 -30839649 + MER21B LTR ERV1 1 301 -562 285 29 0 0 chr21 14067926 14067960 -30839610 + (TG)n Simple_repeat Simple_repeat 2 35 0 2047 137 6 25 chr21 14067960 14068274 -30839296 - AluSx SINE Alu -4 308 1 2310 68 0 39 chr21 14068355 14068662 -30838908 - AluY SINE Alu -16 295 1 2129 105 7 0 chr21 14069688 14069973 -30837597 - AluSq SINE Alu -22 291 5 2291 81 14 0 chr21 14069973 14070258 -30837312 - AluSg SINE Alu -21 289 1 376 199 71 9 chr21 14071445 14071616 -30835954 - LTR48 LTR ERV1 -3 738 450 304 216 59 10 chr21 14071653 14071755 -30835815 - LTR48 LTR ERV1 -302 485 379 803 217 126 0 chr21 14071771 14071978 -30835592 - MER34C LTR ERV1 -352 233 1 320 288 50 12 chr21 14072074 14072154 -30835416 - L2 LINE L2 0 3272 3190 2655 189 80 34 chr21 14073434 14074169 -30833401 - LTR48 LTR ERV1 -24 742 1 197 313 0 0 chr21 14074393 14074441 -30833129 + L2 LINE L2 3242 3289 -24 507 299 19 19 chr21 14075803 14075957 -30831613 + MER5A DNA MER1_type 35 188 -1 367 77 19 0 chr21 14075980 14076028 -30831542 - THE1B LTR MaLR 0 364 316 2075 122 6 6 chr21 14076028 14076348 -30831222 + THE1B LTR MaLR 1 320 -44 2299 130 6 6 chr21 14076348 14076702 -30830868 - THE1B LTR MaLR 0 364 11 22 0 0 0 chr21 14076702 14076724 -30830846 + AT_rich Low_complexity Low_complexity 1 22 0 3050 117 61 23 chr21 14077034 14077562 -30830008 - MER4B LTR ERV1 0 610 63 316 271 62 57 chr21 14077794 14077971 -30829599 + MLT1J LTR MaLR 3 180 -331 1425 239 119 13 chr21 14078495 14079017 -30828553 - L1MC4 LINE L1 -136 7906 7330 4254 142 19 4 chr21 14079017 14079721 -30827849 + MER50 LTR ERV1 1 714 -20 476 194 124 0 chr21 14079722 14079851 -30827719 - L1MC4a LINE L1 -558 7250 7106 746 279 57 12 chr21 14081519 14081763 -30825807 - MIR SINE MIR 0 262 8 437 215 0 11 chr21 14082361 14082454 -30825116 + MIR SINE MIR 171 262 0 653 309 53 4 chr21 14082637 14082921 -30824649 + L2 LINE L2 2414 2828 -486 422 296 124 45 chr21 14082987 14083318 -30824252 - L1M4 LINE L1 -1380 4766 4410 23 54 0 0 chr21 14084688 14084725 -30822845 + AT_rich Low_complexity Low_complexity 1 37 0 329 368 31 39 chr21 14084886 14085144 -30822426 + L2 LINE L2 2813 3068 -204 542 196 244 6 chr21 14088380 14088548 -30819022 - MER3 DNA MER1_type 0 209 2 343 233 244 16 chr21 14088816 14089009 -30818561 - L2 LINE L2 -4 3309 3073 228 291 238 10 chr21 14089117 14089323 -30818247 - L2 LINE L2 -216 3097 2845 516 239 33 131 chr21 14091046 14091351 -30816219 - MER102b DNA MER1_type -23 318 44 4554 203 94 38 chr21 14091415 14092778 -30814792 - Charlie1a DNA MER1_type -15 1440 2 265 273 83 25 chr21 14093069 14093190 -30814380 - LTR67 LTR ERVL -57 500 373 23 0 0 0 chr21 14093484 14093507 -30814063 + GC_rich Low_complexity Low_complexity 1 23 0 225 337 34 11 chr21 14093518 14093607 -30813963 - LTR67 LTR ERVL -363 194 104 1106 177 29 19 chr21 14094387 14094596 -30812974 + AluJo SINE Alu 84 294 -18 926 251 23 0 chr21 14096084 14096303 -30811267 - MER58A DNA MER1_type 0 224 1 260 266 71 35 chr21 14096508 14096621 -30810949 - MIR SINE MIR -67 195 79 33 73 0 0 chr21 14097186 14097254 -30810316 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr21 14097490 14097522 -30810048 + AT_rich Low_complexity Low_complexity 1 32 0 320 226 132 9 chr21 14098435 14098541 -30809029 - HERVL68 LTR ERVL -1026 2011 1893 1546 267 44 5 chr21 14098565 14099161 -30808409 - HERVL68 LTR ERVL -1508 4022 3384 10957 239 66 29 chr21 14099209 14101420 -30806150 + L1M2c LINE L1 4 2131 -5036 2337 75 0 40 chr21 14101420 14101741 -30805829 + AluY SINE Alu 1 308 -3 10957 239 66 29 chr21 14101741 14102035 -30805535 + L1M2c LINE L1 2131 2413 -4754 2196 107 3 0 chr21 14102035 14102334 -30805236 + AluSp SINE Alu 1 300 -13 10957 239 66 29 chr21 14102334 14105218 -30802352 + L1M2c LINE L1 2413 5887 -1280 409 296 40 15 chr21 14105229 14105428 -30802142 + L1M4 LINE L1 4417 4620 -1526 204 321 45 36 chr21 14108732 14108844 -30798726 - MIR3 SINE MIR -3 205 93 257 350 60 0 chr21 14112503 14112620 -30794950 + L2 LINE L2 3190 3313 0 327 286 185 38 chr21 14112881 14113227 -30794343 - HAL1 LINE L1 -229 2278 1882 402 339 98 52 chr21 14113276 14113777 -30793793 - HAL1 LINE L1 -1874 633 110 549 272 106 30 chr21 14114649 14115336 -30792234 + L1ME LINE L1 784 1531 -4549 263 307 149 29 chr21 14115411 14115487 -30792083 + L2 LINE L2 1732 1797 -1517 1409 176 54 45 chr21 14115487 14115822 -30791748 + MER44D DNA MER2_type 1 608 -1 263 307 149 29 chr21 14115822 14115986 -30791584 + L2 LINE L2 1797 2001 -1313 216 279 15 15 chr21 14116051 14116119 -30791451 + MER5B DNA MER1_type 111 178 0 355 118 0 0 chr21 14116347 14116398 -30791172 + L2 LINE L2 3263 3313 0 433 271 106 47 chr21 14116682 14116918 -30790652 + MER112 DNA MER1_type 2 251 -9 748 245 149 0 chr21 14118051 14118259 -30789311 + MIR SINE MIR 23 261 -1 27 49 0 0 chr21 14118268 14118309 -30789261 + AT_rich Low_complexity Low_complexity 1 41 0 3163 267 54 20 chr21 14120142 14121333 -30786237 + L1ME LINE L1 2677 3907 -2173 204 130 74 19 chr21 14122113 14122167 -30785403 + (TTAAA)n Simple_repeat Simple_repeat 5 61 0 44 63 0 0 chr21 14122187 14122266 -30785304 + AT_rich Low_complexity Low_complexity 1 79 0 390 218 0 0 chr21 14122433 14122511 -30785059 + MIR SINE MIR 185 262 0 238 224 0 0 chr21 14124148 14124197 -30783373 + T-rich Low_complexity Low_complexity 1 49 0 1627 190 0 28 chr21 14124651 14124972 -30782598 - AluJo SINE Alu 0 312 1 1205 258 81 30 chr21 14125173 14125607 -30781963 - MLT1C LTR MaLR -5 462 7 243 0 0 0 chr21 14126291 14126318 -30781252 + (TG)n Simple_repeat Simple_repeat 2 28 0 438 234 103 0 chr21 14127059 14127166 -30780404 - MLT1I LTR MaLR -219 190 73 3858 141 26 5 chr21 14127235 14127879 -30779691 + L1MB2 LINE L1 5484 6141 -30 341 316 90 13 chr21 14128601 14128756 -30778814 - MIR SINE MIR -32 230 64 192 214 0 0 chr21 14129856 14129912 -30777658 + (TA)n Simple_repeat Simple_repeat 1 56 0 2413 60 0 10 chr21 14130111 14130411 -30777159 + AluY SINE Alu 1 297 -14 279 245 43 21 chr21 14131115 14131209 -30776361 + MER69 DNA AcHobo 2430 2525 -1 333 371 83 39 chr21 14131211 14131645 -30775925 + L2 LINE L2 1487 1939 -1375 1060 139 23 0 chr21 14131648 14131820 -30775750 + THE1A LTR MaLR 1 176 -179 489 123 12 0 chr21 14131815 14131896 -30775674 - THE1A LTR MaLR -120 235 154 * 1396 89 5 0 chr21 14131891 14132082 -30775488 + THE1A LTR MaLR 164 355 0 9977 104 11 80 chr21 14132082 14133772 -30773798 + THE1A-int LTR MaLR 1 1735 0 2413 116 3 3 chr21 14133772 14134127 -30773443 + THE1A LTR MaLR 1 355 0 606 300 95 97 chr21 14134196 14134595 -30772975 + L2 LINE L2 1984 2382 -931 2152 119 0 0 chr21 14134595 14134890 -30772680 + AluSx SINE Alu 2 296 -16 606 300 95 97 chr21 14134890 14135251 -30772319 + L2 LINE L2 2382 2742 -571 1915 148 10 62 chr21 14135251 14135635 -30771935 - THE1B LTR MaLR 0 364 1 606 300 95 97 chr21 14135635 14136189 -30771381 + L2 LINE L2 2742 3286 -27 230 322 11 0 chr21 14136203 14136293 -30771277 + (TA)n Simple_repeat Simple_repeat 2 92 0 294 229 152 57 chr21 14137280 14137385 -30770185 + L2 LINE L2 3199 3313 0 22 35 0 0 chr21 14138381 14138410 -30769160 + AT_rich Low_complexity Low_complexity 1 29 0 251 331 23 0 chr21 14138934 14139064 -30768506 - L1MC/D LINE L1 -1896 5912 5780 292 252 104 74 chr21 14139126 14139261 -30768309 - L1MC/D LINE L1 -484 5686 5548 380 176 0 9 chr21 14142241 14142349 -30765221 + CT-rich Low_complexity Low_complexity 4 110 0 1867 136 4 0 chr21 14142352 14142631 -30764939 - AluSx SINE Alu -3 309 30 21 0 0 0 chr21 14145031 14145052 -30762518 + AT_rich Low_complexity Low_complexity 1 21 0 438 94 0 0 chr21 14145486 14145550 -30762020 + (TG)n Simple_repeat Simple_repeat 2 65 0 192 344 16 0 chr21 14146001 14146062 -30761508 - L2 LINE L2 -4 3268 3207 226 300 83 83 chr21 14146137 14146390 -30761180 - L2 LINE L2 -730 2584 2332 2199 94 0 3 chr21 14146395 14146681 -30760889 - AluSc SINE Alu -24 285 1 1254 117 27 0 chr21 14146917 14147105 -30760465 - L1PA15 LINE L1 -21 6144 5952 385 251 116 51 chr21 14147107 14147481 -30760089 - L1MC/D LINE L1 -770 5376 5215 195 391 93 51 chr21 14149688 14150120 -30757450 + L2 LINE L2 2814 3263 -9 2129 116 3 3 chr21 14150481 14150792 -30756778 + AluY SINE Alu 1 311 0 347 270 33 20 chr21 14151335 14151487 -30756083 - HAL1b LINE L1 -2 1346 1193 214 298 29 67 chr21 14155207 14155311 -30752259 + MER5A DNA MER1_type 61 163 -18 210 390 0 50 chr21 14155657 14155683 -30751887 + L2 LINE L2 3163 3189 -83 1599 165 41 10 chr21 14155683 14155974 -30751596 - AluSq SINE Alu -13 300 1 210 390 0 50 chr21 14155974 14156047 -30751523 + L2 LINE L2 3189 3257 -15 196 302 0 16 chr21 14156258 14156321 -30751249 + MER5B DNA MER1_type 90 151 -27 * 216 293 52 0 chr21 14156271 14156329 -30751241 - MER5B DNA MER1_type -101 77 17 343 344 25 8 chr21 14157858 14157980 -30749590 + L2 LINE L2 2931 3054 -218 218 250 25 38 chr21 14159410 14159490 -30748080 + L2 LINE L2 3156 3234 -79 206 214 80 89 chr21 14159513 14159625 -30747945 - L2 LINE L2 -962 2352 2242 302 341 33 0 chr21 14159653 14159744 -30747826 - L2 LINE L2 -2127 1187 1094 240 336 16 0 chr21 14160345 14160467 -30747103 + MIR SINE MIR 16 139 -69 339 310 171 56 chr21 14162030 14162246 -30745324 + MIR SINE MIR 16 256 -6 423 224 172 49 chr21 14162454 14162820 -30744750 - L1ME4a LINE L1 -81 6040 5630 295 261 0 0 chr21 14162821 14162890 -30744680 - L1ME LINE L1 -441 5680 5612 345 140 0 0 chr21 14163846 14163903 -30743667 + (TA)n Simple_repeat Simple_repeat 1 57 0 2015 144 3 0 chr21 14163903 14164201 -30743369 - AluSx SINE Alu -8 304 6 23 0 0 0 chr21 14165840 14165863 -30741707 + AT_rich Low_complexity Low_complexity 1 23 0 256 328 35 58 chr21 14167061 14167235 -30740335 + MER91A DNA MER1_type 1 170 -26 275 211 18 0 chr21 14167298 14167355 -30740215 + MER91A DNA MER1_type 139 196 0 26 30 0 0 chr21 14168047 14168080 -30739490 + AT_rich Low_complexity Low_complexity 1 33 0 546 176 17 59 chr21 14168566 14168685 -30738885 + MER81 DNA DNA 1 114 0 945 291 107 21 chr21 14169070 14169245 -30738325 - HAL1 LINE L1 -135 2372 2213 222 37 0 0 chr21 14169245 14169272 -30738298 + (CA)n Simple_repeat Simple_repeat 1 27 0 945 291 107 21 chr21 14169272 14169711 -30737859 - HAL1 LINE L1 -294 2213 1705 542 270 158 5 chr21 14170085 14170281 -30737289 + MIR SINE MIR 37 262 0 249 305 0 0 chr21 14171017 14171122 -30736448 + (CA)n Simple_repeat Simple_repeat 2 106 0 21 0 0 0 chr21 14171366 14171387 -30736183 + AT_rich Low_complexity Low_complexity 1 21 0 396 351 82 21 chr21 14171389 14171717 -30735853 - L1 LINE L1 -2372 3774 3427 2113 104 0 0 chr21 14171881 14172188 -30735382 - AluSg SINE Alu 0 307 1 784 273 94 20 chr21 14173458 14173799 -30733771 - L1ME3A LINE L1 -60 6110 5745 258 343 87 17 chr21 14173813 14173985 -30733585 - L2 LINE L2 -30 3283 3100 2636 36 0 0 chr21 14174209 14174515 -30733055 - AluY SINE Alu -5 306 1 403 330 201 0 chr21 14174788 14174982 -30732588 + MIR SINE MIR 12 244 -18 874 290 110 75 chr21 14175752 14176932 -30730638 - L1ME3A LINE L1 -1304 4842 3604 2376 65 0 10 chr21 14176932 14177239 -30730331 - AluY SINE Alu -7 304 1 874 290 110 75 chr21 14177239 14177455 -30730115 - L1ME3A LINE L1 -2542 3604 3397 252 59 0 0 chr21 14177703 14177737 -30729833 + (TA)n Simple_repeat Simple_repeat 2 35 0 1095 123 12 0 chr21 14177737 14177899 -30729671 - AluSg/x SINE Alu -15 297 134 2100 117 0 7 chr21 14177899 14178199 -30729371 - AluSx SINE Alu -14 298 1 284 296 49 14 chr21 14178270 14178412 -30729158 - L1ME3A LINE L1 -3245 2901 2755 215 111 0 22 chr21 14178675 14178720 -30728850 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr21 14178720 14178740 -30728830 + (GA)n Simple_repeat Simple_repeat 2 21 0 1405 151 22 4 chr21 14179959 14180191 -30727379 + MER46A DNA MER2_type 1 236 0 22 35 0 0 chr21 14180734 14180763 -30726807 + AT_rich Low_complexity Low_complexity 1 29 0 2028 91 4 7 chr21 14181500 14181776 -30725794 + AluSg SINE Alu 1 275 -35 198 0 0 0 chr21 14181776 14181798 -30725772 + (T)n Simple_repeat Simple_repeat 1 22 0 870 209 47 19 chr21 14182463 14182674 -30724896 - MER20 DNA MER1_type -2 217 1 212 307 9 88 chr21 14183152 14183266 -30724304 + MIR SINE MIR 158 262 0 225 300 0 0 chr21 14183939 14183999 -30723571 + (TA)n Simple_repeat Simple_repeat 2 61 0 843 266 101 8 chr21 14184440 14184677 -30722893 - MIR SINE MIR -3 259 1 875 319 66 14 chr21 14185280 14185782 -30721788 + L1M4 LINE L1 4146 4673 -1473 919 215 105 0 chr21 14186352 14186552 -30721018 + MER58A DNA MER1_type 1 221 -3 1529 197 7 17 chr21 14186709 14187009 -30720561 + AluJo SINE Alu 3 299 -13 354 213 0 0 chr21 14187995 14188075 -30719495 - L1MC2 LINE L1 -11 6333 6254 21 57 0 0 chr21 14188328 14188363 -30719207 + AT_rich Low_complexity Low_complexity 1 35 0 592 209 134 21 chr21 14188644 14188831 -30718739 - MER3 DNA MER1_type 0 209 2 282 301 43 11 chr21 14189179 14189272 -30718298 - MIR SINE MIR -69 139 44 1179 82 0 6 chr21 14189596 14189754 -30717816 + AluSg/x SINE Alu 145 301 -11 234 0 0 0 chr21 14189759 14189785 -30717785 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr21 14190510 14190531 -30717039 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 14190644 14190672 -30716898 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr21 14190720 14190748 -30716822 + AT_rich Low_complexity Low_complexity 1 28 0 1444 196 0 35 chr21 14190849 14191165 -30716405 - AluJb SINE Alu -7 305 1 2024 98 31 0 chr21 14191250 14191537 -30716033 - AluSp SINE Alu -17 296 1 1870 129 0 50 chr21 14192634 14192936 -30714634 + AluSc SINE Alu 6 292 -17 217 333 77 13 chr21 14193202 14193280 -30714290 - L2 LINE L2 -51 3221 3139 182 291 115 34 chr21 14193973 14194121 -30713449 - MIR SINE MIR -15 247 88 1998 124 49 35 chr21 14194124 14194494 -30713076 - THE1C LTR MaLR 0 375 1 992 245 37 0 chr21 14194747 14194963 -30712607 + MER58A DNA MER1_type 1 224 0 203 309 111 0 chr21 14194964 14195045 -30712525 + L2 LINE L2 3190 3279 -34 25 51 0 0 chr21 14195815 14195854 -30711716 + AT_rich Low_complexity Low_complexity 1 39 0 231 188 0 0 chr21 14197056 14197104 -30710466 + (TA)n Simple_repeat Simple_repeat 2 49 0 11812 167 31 16 chr21 14198106 14199611 -30707959 - L1PA11 LINE L1 0 6174 4693 189 74 0 0 chr21 14199611 14199638 -30707932 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 11812 167 31 16 chr21 14199638 14201052 -30706518 - L1PA11 LINE L1 -1481 4693 3209 2232 74 0 44 chr21 14201052 14201350 -30706220 + AluY SINE Alu 12 296 -15 11812 167 31 16 chr21 14201350 14201615 -30705955 - L1PA11 LINE L1 -2965 3209 2949 640 230 84 28 chr21 14201911 14202089 -30705481 + MER5A DNA MER1_type 2 189 0 22 0 0 0 chr21 14202211 14202233 -30705337 + AT_rich Low_complexity Low_complexity 1 22 0 1651 171 41 69 chr21 14202487 14202879 -30704691 - MLT1B LTR MaLR 0 390 10 1578 210 0 0 chr21 14204065 14204360 -30703210 - AluJb SINE Alu -17 295 1 1048 259 13 13 chr21 14204715 14204954 -30702616 + MIR SINE MIR 13 251 -11 266 268 116 36 chr21 14205554 14205666 -30701904 + L2 LINE L2 3124 3244 -28 691 216 27 0 chr21 14205732 14205880 -30701690 - MER3 DNA MER1_type -57 152 1 686 303 85 4 chr21 14206125 14206574 -30700996 - LTR50 LTR ERVL -148 647 1 219 272 148 25 chr21 14206799 14206880 -30700690 - L2 LINE L2 -1 3312 3222 375 300 132 17 chr21 14207202 14207489 -30700081 - L1MC/D LINE L1 -2185 5623 5304 370 269 67 0 chr21 14208365 14208469 -30699101 - Charlie1 DNA MER1_type -15 2746 2636 236 351 15 8 chr21 14208888 14209019 -30698551 - L1MEc LINE L1 -6209 187 56 429 20 0 0 chr21 14209105 14209155 -30698415 + (CA)n Simple_repeat Simple_repeat 1 50 0 297 0 0 0 chr21 14209644 14209677 -30697893 + (A)n Simple_repeat Simple_repeat 1 33 0 888 262 134 30 chr21 14209677 14210169 -30697401 + L1ME3 LINE L1 5352 5894 -268 389 293 224 41 chr21 14210387 14210780 -30696790 - L2 LINE L2 -1020 2294 1830 324 286 33 0 chr21 14210955 14211046 -30696524 + MER69 DNA AcHobo 2152 2245 -281 320 361 39 0 chr21 14211397 14211527 -30696043 + L1MEd LINE L1 768 902 -5494 23 33 0 0 chr21 14211559 14211589 -30695981 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr21 14211632 14211653 -30695917 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 14212514 14212538 -30695032 + AT_rich Low_complexity Low_complexity 1 24 0 281 190 0 35 chr21 14213079 14213137 -30694433 + U6 snRNA snRNA 52 107 0 14363 160 50 29 chr21 14213450 14216902 -30690668 + L1MA2 LINE L1 342 3721 -4002 1407 121 19 0 chr21 14216902 14217117 -30690453 - L1PA14 LINE L1 -9 6152 5934 14363 160 50 29 chr21 14217117 14220535 -30687035 + L1MA2 LINE L1 3721 7723 0 302 325 53 0 chr21 14220801 14220915 -30686655 + L1MEd LINE L1 1166 1285 -5124 286 281 92 73 chr21 14221015 14221110 -30686460 + L1MEd LINE L1 1425 1517 -5070 2589 42 0 3 chr21 14221110 14221416 -30686154 + AluY SINE Alu 7 311 0 286 281 92 73 chr21 14221416 14221883 -30685687 + L1MEd LINE L1 1517 1998 -4589 1540 267 39 15 chr21 14221900 14222312 -30685258 + L1M4 LINE L1 16 437 -6105 1943 173 18 23 chr21 14222320 14222708 -30684862 + MER50 LTR ERV1 349 734 0 327 241 24 0 chr21 14222768 14222851 -30684719 + L1M4 LINE L1 475 559 -5983 355 272 32 16 chr21 14222985 14223110 -30684460 + L1M4 LINE L1 562 688 -5854 334 336 55 66 chr21 14223259 14223625 -30683945 - L1ME LINE L1 -5699 371 10 697 222 0 0 chr21 14223791 14223926 -30683644 + FLAM_C SINE Alu 3 137 -6 1609 153 0 58 chr21 14224520 14224833 -30682737 - AluJb SINE Alu -17 295 1 330 309 47 0 chr21 14224930 14225079 -30682491 - L1MEc LINE L1 -4710 1686 1531 743 172 133 7 chr21 14225094 14225245 -30682325 - AluSc SINE Alu -15 294 125 2927 213 46 26 chr21 14225332 14225716 -30681854 - MER44D DNA MER2_type -1882 605 327 2234 53 40 30 chr21 14225716 14226016 -30681554 - AluY SINE Alu -8 303 1 2927 213 46 26 chr21 14226016 14226349 -30681221 - MER44D DNA MER2_type -2160 327 2 717 144 25 0 chr21 14226474 14226592 -30680978 + MER65B LTR ERV1 7 127 -404 3960 187 84 32 chr21 14226656 14227726 -30679844 + MER4-int LTR ERV1 1369 2494 -2377 1109 206 62 87 chr21 14227802 14228574 -30678996 + MER4-int LTR ERV1 1516 2435 -4323 2173 121 13 0 chr21 14228577 14228883 -30678687 - AluSq SINE Alu -3 310 1 17894 76 8 3 chr21 14229013 14232263 -30675307 - L1PA6 LINE L1 -1 6153 2896 207 0 0 0 chr21 14232327 14232350 -30675220 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 32134 37 1 1 chr21 14232352 14238506 -30669064 - L1PA3 LINE L1 -3 6152 1 7814 81 0 2 chr21 14238509 14239580 -30667990 - L1PA6 LINE L1 -3219 2927 1859 803 202 52 91 chr21 14239676 14240436 -30667134 + MER4-int LTR ERV1 3730 4481 -1850 530 157 43 71 chr21 14240436 14240576 -30666994 + MER65A LTR ERV1 310 445 0 396 247 19 78 chr21 14240636 14240790 -30666780 - MLT1I LTR MaLR -200 209 65 1377 248 70 13 chr21 14240931 14241406 -30666164 + MLT1D LTR MaLR 1 502 -3 24 77 0 0 chr21 14242175 14242227 -30665343 + AT_rich Low_complexity Low_complexity 1 52 0 2067 110 138 46 chr21 14242285 14242313 -30665257 + MSTA LTR MaLR 1 25 -403 2165 114 47 42 chr21 14242313 14242674 -30664896 - THE1B LTR MaLR 0 364 2 11400 109 4 0 chr21 14242675 14244249 -30663321 - THE1B-int LTR MaLR 0 1580 1 2118 130 54 23 chr21 14244249 14244602 -30662968 - THE1B LTR MaLR 0 364 1 2067 110 138 46 chr21 14244602 14244962 -30662608 + MSTA LTR MaLR 24 428 0 601 282 32 62 chr21 14245611 14245951 -30661619 - LTR41 LTR ERVL -7 766 437 616 228 28 17 chr21 14246114 14246294 -30661276 - LTR41 LTR ERVL -586 187 6 21 0 0 0 chr21 14247936 14247957 -30659613 + AT_rich Low_complexity Low_complexity 1 21 0 1923 159 3 3 chr21 14248828 14249124 -30658446 - AluSx SINE Alu -16 296 1 3566 237 70 35 chr21 14249256 14250379 -30657191 - L1MDa LINE L1 -5347 1193 32 3079 71 10 2 chr21 14250644 14251254 -30656316 + PABL_A LTR ERV1 1 660 0 2328 78 0 26 chr21 14251561 14251870 -30655700 - AluSc SINE Alu -8 301 1 2244 122 0 0 chr21 14251923 14252227 -30655343 + AluSx SINE Alu 1 304 -8 195 323 16 0 chr21 14252991 14253053 -30654517 + L2 LINE L2 3251 3313 0 686 278 143 24 chr21 14253695 14254065 -30653505 - MLT1J2 LTR MaLR -34 416 3 438 294 8 0 chr21 14254836 14254962 -30652608 + MIR SINE MIR 75 201 -61 21 0 0 0 chr21 14255030 14255051 -30652519 + AT_rich Low_complexity Low_complexity 1 21 0 753 240 35 30 chr21 14255107 14255307 -30652263 - L1ME1 LINE L1 -63 6172 5972 724 231 64 6 chr21 14255334 14255664 -30651906 - L1ME1 LINE L1 -678 5555 5212 502 292 7 0 chr21 14255665 14255809 -30651761 - L1ME1 LINE L1 -1127 5088 4944 2035 154 46 31 chr21 14255812 14256357 -30651213 - MLT2A2 LTR ERVL 0 554 1 810 269 91 27 chr21 14256357 14256799 -30650771 - L1ME1 LINE L1 -1270 4945 4476 950 237 30 39 chr21 14256799 14256866 -30650704 - L1ME1 LINE L1 -4488 1908 1842 2901 176 21 5 chr21 14256866 14257239 -30650331 - L1MB2 LINE L1 -3 6168 5778 1056 137 0 0 chr21 14257239 14257468 -30650102 + (TA)n Simple_repeat Simple_repeat 1 229 0 2901 176 21 5 chr21 14257468 14257648 -30649922 - L1MB2 LINE L1 -393 5778 5602 950 237 30 39 chr21 14257648 14257917 -30649653 - L1ME1 LINE L1 -4554 1842 1575 390 267 11 0 chr21 14257955 14258045 -30649525 - MLT1F LTR MaLR -447 95 5 468 288 61 82 chr21 14258055 14258447 -30649123 - MLT1F-int LTR MaLR -6 1365 982 327 287 88 7 chr21 14258921 14259057 -30648513 - MLT1F-int LTR MaLR -760 611 465 6539 211 49 8 chr21 14259864 14261381 -30646189 - Cheshire DNA MER1_type 0 2420 841 279 170 57 0 chr21 14261386 14261439 -30646131 - Cheshire DNA MER1_type -2321 99 44 5236 124 30 6 chr21 14262333 14263266 -30644304 - L1PB1 LINE L1 -3 6148 5232 34 24 0 0 chr21 14263340 14263381 -30644189 + AT_rich Low_complexity Low_complexity 1 41 0 288 289 208 6 chr21 14263421 14263580 -30643990 + MIR SINE MIR 41 231 -31 267 209 15 0 chr21 14265140 14265207 -30642363 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 1484 215 48 14 chr21 14266955 14267428 -30640142 - L1MC/D LINE L1 -718 5641 5154 2707 107 0 3 chr21 14267442 14267833 -30639737 - L1PA13 LINE L1 -1 6162 5773 18856 91 8 14 chr21 14267838 14270609 -30636961 - L1PA13 LINE L1 -914 5232 2479 2211 146 4 16 chr21 14270597 14271151 -30636419 - L1P4 LINE L1 -678 6923 6373 * 4443 181 11 10 chr21 14271149 14272031 -30635539 - L1P4 LINE L1 -3595 3989 3107 3472 173 16 9 chr21 14272039 14272618 -30634952 - L1P4 LINE L1 -6986 595 13 1673 235 61 27 chr21 14272618 14273086 -30634484 - L1MC/D LINE L1 -1003 5143 4651 1874 170 10 0 chr21 14273086 14273380 -30634190 - AluSx SINE Alu -15 297 1 1673 235 61 27 chr21 14273380 14273472 -30634098 - L1MC/D LINE L1 -1495 4651 4564 3908 208 38 14 chr21 14273493 14273878 -30633692 - L1MB7 LINE L1 0 6184 5810 3011 88 44 14 chr21 14273878 14274266 -30633304 + MLT2A1 LTR ERVL 1 405 -39 180 0 0 0 chr21 14274266 14274286 -30633284 + (TA)n Simple_repeat Simple_repeat 2 21 0 3011 88 44 14 chr21 14274286 14274328 -30633242 + MLT2A1 LTR ERVL 405 444 0 3908 208 38 14 chr21 14274328 14275561 -30632009 - L1MB7 LINE L1 -374 5810 4528 322 221 0 13 chr21 14275548 14275625 -30631945 + L1ME1 LINE L1 4841 4916 -1230 * 821 250 144 9 chr21 14275626 14275974 -30631596 + L1ME1 LINE L1 4996 5390 -756 568 226 99 63 chr21 14276035 14276256 -30631314 - MER34B LTR ERV1 -312 253 25 1264 234 75 18 chr21 14276264 14276653 -30630917 + L1ME1 LINE L1 5691 6101 -65 285 51 0 0 chr21 14276768 14276807 -30630763 + (TC)n Simple_repeat Simple_repeat 2 40 0 321 26 0 0 chr21 14277125 14277163 -30630407 + (CA)n Simple_repeat Simple_repeat 2 39 0 378 0 0 0 chr21 14277165 14277207 -30630363 + (TA)n Simple_repeat Simple_repeat 2 43 0 261 238 0 0 chr21 14277976 14278039 -30629531 + (ATG)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr21 14278362 14278385 -30629185 + AT_rich Low_complexity Low_complexity 1 23 0 2601 39 0 3 chr21 14278621 14278931 -30628639 - AluY SINE Alu -2 309 1 366 173 82 36 chr21 14279662 14279772 -30627798 - L1ME4a LINE L1 -11 6110 5996 2477 76 0 3 chr21 14280625 14280928 -30626642 + AluSq SINE Alu 1 302 -11 1148 102 28 0 chr21 14281211 14281387 -30626183 - L1MA3 LINE L1 0 6305 6125 268 261 239 0 chr21 14281577 14281669 -30625901 - MER5B DNA MER1_type -63 115 2 352 277 26 155 chr21 14283328 14283714 -30623856 - L2 LINE L2 -33 3280 2945 1667 225 59 53 chr21 14284100 14284612 -30622958 - MLT1E2 LTR MaLR 0 626 112 2410 206 13 11 chr21 14284622 14285092 -30622478 + MER21B LTR ERV1 1 471 -392 24 32 0 0 chr21 14285097 14285128 -30622442 + AT_rich Low_complexity Low_complexity 1 31 0 1342 194 96 50 chr21 14285153 14285530 -30622040 + MER21B LTR ERV1 454 847 -16 254 142 178 60 chr21 14285553 14285650 -30621920 - MLT1E1 LTR MaLR -493 131 1 270 0 0 0 chr21 14285686 14285716 -30621854 + (T)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr21 14286430 14286452 -30621118 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 14287688 14287709 -30619861 + (CAT)n Simple_repeat Simple_repeat 2 22 0 204 308 77 48 chr21 14287877 14287981 -30619589 - L2 LINE L2 -2919 395 289 2799 81 74 12 chr21 14288564 14288939 -30618631 + MLT2A1 LTR ERVL 1 406 -38 520 26 0 26 chr21 14288939 14289015 -30618555 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2799 81 74 12 chr21 14289015 14289057 -30618513 + MLT2A1 LTR ERVL 406 444 0 21 36 0 0 chr21 14289912 14289940 -30617630 + AT_rich Low_complexity Low_complexity 1 28 0 1971 76 0 0 chr21 14290675 14290926 -30616644 - AluY SINE Alu -11 300 50 27 29 0 0 chr21 14291176 14291210 -30616360 + AT_rich Low_complexity Low_complexity 1 34 0 242 241 46 35 chr21 14291250 14291337 -30616233 - MIR3 SINE MIR -1 207 120 2104 97 10 30 chr21 14292320 14292662 -30614908 + AluSg SINE Alu 1 336 0 566 253 18 62 chr21 14294501 14294726 -30612844 - MER58C DNA MER1_type 0 215 1 3021 99 2 20 chr21 14297389 14297845 -30609725 - LTR7 LTR ERV1 -2 448 1 2275 113 51 3 chr21 14297845 14298217 -30609353 - HERVH LTR ERV1 0 7713 7324 1492 111 0 22 chr21 14298217 14298442 -30609128 - HERVH LTR ERV1 -1894 5819 5600 3090 131 2 2 chr21 14298443 14299057 -30608513 - HERVH LTR ERV1 -2564 5149 4488 5715 105 9 3 chr21 14299059 14299908 -30607662 - HERVH LTR ERV1 -3720 3993 3140 * 15303 96 9 24 chr21 14299894 14302681 -30604889 - HERVH LTR ERV1 -4721 2992 1 2998 101 2 22 chr21 14302683 14303140 -30604430 - LTR7 LTR ERV1 -2 448 1 197 389 19 9 chr21 14303418 14303526 -30604044 + MIR3 SINE MIR 13 121 -87 783 207 50 6 chr21 14304747 14304926 -30602644 - L1MB5 LINE L1 -8 6166 5980 21 0 0 0 chr21 14305315 14305336 -30602234 + AT_rich Low_complexity Low_complexity 1 21 0 245 106 0 21 chr21 14305523 14305570 -30602000 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 275 283 57 45 chr21 14305612 14305832 -30601738 - MIR SINE MIR -55 207 20 326 295 74 8 chr21 14305840 14305962 -30601608 + MIR3 SINE MIR 66 195 -13 22 35 0 0 chr21 14308268 14308297 -30599273 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 14308503 14308529 -30599041 + AT_rich Low_complexity Low_complexity 1 26 0 280 274 54 2 chr21 14309161 14309270 -30598300 + MIR SINE MIR 33 146 -62 284 92 0 0 chr21 14309442 14309484 -30598086 - MLT2B2 LTR ERVL 0 515 373 313 250 23 8 chr21 14309510 14309642 -30597928 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 272 123 39 50 chr21 14309642 14309821 -30597749 + (TA)n Simple_repeat Simple_repeat 1 177 0 1465 247 52 46 chr21 14309881 14310362 -30597208 - MLT2B1 LTR ERVL -35 485 2 2350 93 0 10 chr21 14311035 14311347 -30596223 - AluSp SINE Alu -4 309 1 1414 201 105 85 chr21 14311619 14312326 -30595244 + MER69 DNA AcHobo 1466 2186 -340 390 195 42 100 chr21 14312320 14312447 -30595123 + MER69 DNA AcHobo 2337 2451 -75 * 2636 48 0 3 chr21 14312447 14312759 -30594811 - AluY SINE Alu 0 311 1 390 195 42 100 chr21 14312759 14312821 -30594749 + MER69 DNA AcHobo 2451 2515 -11 194 318 0 68 chr21 14312912 14313000 -30594570 + L2 LINE L2 3191 3272 0 181 222 0 93 chr21 14314276 14314330 -30593240 - L2 LINE L2 0 3313 3265 266 196 20 0 chr21 14314487 14314538 -30593032 - MIR3 SINE MIR -6 202 151 444 204 29 109 chr21 14314601 14314690 -30592880 - L2 LINE L2 0 3313 3237 2549 53 0 0 chr21 14314690 14314993 -30592577 + AluY SINE Alu 1 303 -8 444 204 29 109 chr21 14314993 14315040 -30592530 - L2 LINE L2 -76 3237 3188 340 298 56 23 chr21 14316307 14316522 -30591048 - MER112 DNA MER1_type -38 222 1 23 0 0 0 chr21 14316785 14316808 -30590762 + AT_rich Low_complexity Low_complexity 1 23 0 195 384 14 0 chr21 14318661 14318734 -30588836 + L2 LINE L2 3197 3270 -2 2279 115 11 11 chr21 14319110 14319467 -30588103 + L1PA10 LINE L1 5812 6168 0 338 277 77 41 chr21 14319988 14320183 -30587387 + L1MDa LINE L1 1804 2005 -4535 2095 110 3 3 chr21 14320405 14320696 -30586874 + AluSq SINE Alu 1 291 -22 707 310 66 17 chr21 14321665 14321952 -30585618 - MLT1I LTR MaLR -49 360 60 3094 156 66 9 chr21 14322147 14322522 -30585048 - MER6A DNA MER2_type -260 605 184 204 40 0 0 chr21 14322522 14322547 -30585023 + (CA)n Simple_repeat Simple_repeat 2 26 0 3094 156 66 9 chr21 14322547 14322743 -30584827 - MER6A DNA MER2_type -681 184 1 2609 43 0 0 chr21 14322789 14323093 -30584477 - AluY SINE Alu -7 304 1 26 74 0 0 chr21 14324316 14324370 -30583200 + AT_rich Low_complexity Low_complexity 1 54 0 651 228 20 13 chr21 14324413 14324562 -30583008 + MER58B DNA MER1_type 191 340 -1 420 318 40 0 chr21 14324565 14324741 -30582829 + MIR SINE MIR 77 259 -3 237 33 0 0 chr21 14325508 14325538 -30582032 + (CA)n Simple_repeat Simple_repeat 1 30 0 359 277 77 51 chr21 14325716 14325990 -30581580 + L1ME LINE L1 5542 5822 -299 261 0 0 0 chr21 14326094 14326123 -30581447 + (CA)n Simple_repeat Simple_repeat 2 30 0 496 164 40 0 chr21 14326903 14327134 -30580436 + (TA)n Simple_repeat Simple_repeat 1 240 0 300 256 48 40 chr21 14327248 14327373 -30580197 - L1ME LINE L1 -685 5436 5311 789 274 14 46 chr21 14327377 14327596 -30579974 + MER58A DNA MER1_type 2 213 -11 417 291 60 20 chr21 14328443 14328594 -30578976 + MLT1I LTR MaLR 253 409 0 432 0 0 0 chr21 14329604 14329652 -30577918 + (TG)n Simple_repeat Simple_repeat 2 49 0 238 328 88 24 chr21 14330073 14330198 -30577372 + MLT1I LTR MaLR 232 364 -45 2217 120 0 0 chr21 14330464 14330764 -30576806 - AluSq SINE Alu -13 300 1 1575 172 11 11 chr21 14332153 14332420 -30575150 + Tigger7 DNA MER2_type 1 267 -466 528 216 0 0 chr21 14332419 14332516 -30575054 + Tigger7 DNA MER2_type 2491 2587 0 * 9238 35 3 0 chr21 14332561 14334453 -30573117 - L1PA4 LINE L1 0 6155 4259 21 57 0 0 chr21 14335089 14335124 -30572446 + AT_rich Low_complexity Low_complexity 1 35 0 525 268 68 54 chr21 14335656 14335861 -30571709 - MIR SINE MIR -9 253 46 201 282 169 42 chr21 14335869 14336011 -30571559 + MIR SINE MIR 99 258 -4 202 351 14 74 chr21 14336074 14336222 -30571348 + L2 LINE L2 3134 3272 0 275 276 40 0 chr21 14336260 14336336 -30571234 + L1ME LINE L1 5566 5644 -477 794 150 52 40 chr21 14336508 14336681 -30570889 + L1PA14 LINE L1 5985 6159 -2 1749 191 8 40 chr21 14337216 14337435 -30570135 - MLT1A1 LTR MaLR 0 365 161 1939 123 0 0 chr21 14337435 14337704 -30569866 - AluSc SINE Alu -1 308 40 1749 191 8 40 chr21 14337704 14337861 -30569709 - MLT1A1 LTR MaLR -204 161 1 2330 102 0 0 chr21 14341847 14342150 -30565420 + AluSx SINE Alu 1 303 -9 267 143 0 0 chr21 14343277 14343319 -30564251 - MLT1D LTR MaLR 0 505 464 2403 62 0 3 chr21 14344109 14344413 -30563157 - AluY SINE Alu -8 303 1 2417 57 0 0 chr21 14344880 14345179 -30562391 + AluY SINE Alu 1 299 -12 821 239 229 76 chr21 14345600 14345767 -30561803 + MLT1H LTR MaLR 1 141 -408 1752 166 0 11 chr21 14345767 14346050 -30561520 + AluJo SINE Alu 10 289 -23 821 239 229 76 chr21 14346050 14346358 -30561212 + MLT1H LTR MaLR 141 549 0 345 284 101 97 chr21 14347338 14347616 -30559954 - MLT1H LTR MaLR -33 516 238 740 184 114 13 chr21 14348465 14348623 -30558947 + FAM SINE Alu 1 174 -1 1524 194 32 0 chr21 14350357 14350640 -30556930 + AluJb SINE Alu 1 292 -20 244 333 18 26 chr21 14350817 14350931 -30556639 - MLT1K LTR MaLR -157 431 319 21 0 0 0 chr21 14352653 14352674 -30554896 + AT_rich Low_complexity Low_complexity 1 21 0 273 292 48 30 chr21 14352704 14352872 -30554698 - L1ME LINE L1 -412 5709 5539 188 360 81 9 chr21 14352989 14353100 -30554470 + L2 LINE L2 3146 3264 -8 431 242 10 0 chr21 14353246 14353345 -30554225 - U6 snRNA snRNA -6 101 2 28 29 0 0 chr21 14353510 14353545 -30554025 + AT_rich Low_complexity Low_complexity 1 35 0 360 296 105 41 chr21 14353906 14354268 -30553302 - L1ME LINE L1 -1305 4841 4457 1572 153 56 17 chr21 14354353 14354521 -30553049 - AluSx SINE Alu -13 299 114 198 0 0 0 chr21 14354521 14354543 -30553027 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1572 153 56 17 chr21 14354543 14354662 -30552908 - AluSx SINE Alu -198 114 1 1725 175 17 0 chr21 14354665 14354957 -30552613 - AluJb SINE Alu -15 297 1 513 242 102 94 chr21 14355637 14356021 -30551549 - HAL1 LINE L1 -2120 387 1 243 329 72 20 chr21 14356821 14356973 -30550597 + MLT1L LTR MaLR 300 459 -156 242 274 18 88 chr21 14356962 14357022 -30550548 + MLT1K LTR MaLR 450 500 -88 * 2430 117 11 16 chr21 14357022 14357399 -30550171 - THE1C LTR MaLR 0 375 1 242 274 18 88 chr21 14357399 14357451 -30550119 + MLT1K LTR MaLR 500 554 -34 972 259 46 108 chr21 14358659 14359250 -30548320 + MER21B LTR ERV1 141 694 -169 181 254 206 0 chr21 14359262 14359325 -30548245 - MIR SINE MIR -53 209 134 227 269 87 29 chr21 14359693 14359797 -30547773 + MIR SINE MIR 96 205 -57 375 339 119 13 chr21 14360137 14360364 -30547206 + LTR16B LTR ERVL 1 251 -213 25 65 0 0 chr21 14361186 14361232 -30546338 + AT_rich Low_complexity Low_complexity 1 46 0 1452 218 20 83 chr21 14361386 14361933 -30545637 - MLT2B2 LTR ERVL -8 546 29 186 118 0 0 chr21 14363077 14363111 -30544459 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 180 273 26 52 chr21 14363680 14363757 -30543813 + MIR3 SINE MIR 8 82 -126 195 370 10 10 chr21 14363868 14363968 -30543602 + L2 LINE L2 3204 3303 -10 213 308 202 10 chr21 14363980 14364084 -30543486 + MIR3 SINE MIR 71 194 -14 2496 40 0 3 chr21 14364086 14364382 -30543188 + AluY SINE Alu 1 295 -16 593 210 17 0 chr21 14364574 14364693 -30542877 - MLT1A1 LTR MaLR -10 355 235 1001 192 92 19 chr21 14364967 14365208 -30542362 - MLT1A1 LTR MaLR -104 261 1 507 286 11 17 chr21 14365290 14365468 -30542102 - L1MC5 LINE L1 -72 7889 7713 258 226 142 13 chr21 14367208 14367363 -30540207 + L1ME LINE L1 5574 5748 -373 2019 138 10 0 chr21 14367568 14368063 -30539507 + L1MA1 LINE L1 5001 5500 -743 5359 87 29 33 chr21 14368870 14369710 -30537860 + L1MA1 LINE L1 5467 6302 0 1040 17 0 0 chr21 14370601 14370720 -30536850 - L1PA3 LINE L1 0 6155 6037 313 221 29 77 chr21 14370752 14370856 -30536714 + L3b LINE CR1 1260 1358 -225 1398 266 59 46 chr21 14371576 14372019 -30535551 - MLT1J LTR MaLR -4 507 56 1696 243 108 0 chr21 14372019 14372475 -30535095 + MLT1D LTR MaLR 1 505 0 1398 266 59 46 chr21 14372475 14372508 -30535062 - MLT1J LTR MaLR -455 56 25 2416 90 0 0 chr21 14372530 14372860 -30534710 - AluSg SINE Alu 0 330 1 2156 193 21 45 chr21 14373471 14373985 -30533585 + MLT1D LTR MaLR 1 502 -3 1084 74 0 0 chr21 14375305 14375440 -30532130 - AluSg/x SINE Alu -19 293 159 215 322 119 17 chr21 14375518 14375636 -30531934 - MIR SINE MIR -11 251 122 399 305 32 58 chr21 14376898 14377088 -30530482 - HAL1 LINE L1 -628 1879 1695 1052 313 146 26 chr21 14377101 14377693 -30529877 - L1ME1 LINE L1 -3 6232 5547 7016 174 108 65 chr21 14377693 14379375 -30528195 - MER52A LTR ERV1 0 1755 1 1052 313 146 26 chr21 14379375 14379460 -30528110 - L1ME1 LINE L1 -688 5547 5474 2311 89 0 3 chr21 14379527 14379831 -30527739 - AluY SINE Alu -6 305 3 641 275 83 106 chr21 14380002 14380435 -30527135 - MLT1H LTR MaLR -120 429 7 2987 278 116 39 chr21 14380441 14381522 -30526048 - L1ME1 LINE L1 -940 5275 4279 398 53 18 0 chr21 14381522 14381579 -30525991 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2987 278 116 39 chr21 14381579 14383553 -30524017 - L1ME1 LINE L1 -1936 4279 2020 512 226 19 82 chr21 14383608 14383767 -30523803 - MLT1E2 LTR MaLR -476 150 2 2148 125 6 3 chr21 14384108 14384419 -30523151 - AluSx SINE Alu 0 312 1 22 0 0 0 chr21 14384449 14384471 -30523099 + AT_rich Low_complexity Low_complexity 1 22 0 281 182 0 15 chr21 14386328 14386394 -30521176 + (TA)n Simple_repeat Simple_repeat 2 66 0 32 0 0 0 chr21 14386896 14386928 -30520642 + AT_rich Low_complexity Low_complexity 1 32 0 229 192 39 0 chr21 14387902 14387954 -30519616 + (TA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr21 14392799 14392842 -30514728 + AT_rich Low_complexity Low_complexity 1 43 0 699 316 32 40 chr21 14393722 14393972 -30513598 - MIR SINE MIR -2 260 13 229 350 34 8 chr21 14394984 14395101 -30512469 - L3 LINE CR1 -435 1142 1023 561 255 115 13 chr21 14395475 14395632 -30511938 + MIR SINE MIR 13 185 -77 23 0 0 0 chr21 14395724 14395747 -30511823 + AT_rich Low_complexity Low_complexity 1 23 0 269 305 63 0 chr21 14396327 14396422 -30511148 + MIR SINE MIR 111 211 -51 489 299 0 0 chr21 14397497 14397631 -30509939 - MER94 DNA DNA 0 134 1 564 200 35 17 chr21 14397897 14398012 -30509558 - L2 LINE L2 -4 3309 3193 183 302 72 65 chr21 14398646 14398785 -30508785 - MIR3 SINE MIR -2 206 67 28 71 0 0 chr21 14398790 14398846 -30508724 + AT_rich Low_complexity Low_complexity 1 56 0 240 333 0 0 chr21 14400018 14400087 -30507483 + MIR SINE MIR 31 99 -109 2572 108 6 0 chr21 14401305 14401667 -30505903 - THE1B LTR MaLR 0 364 1 316 196 10 72 chr21 14401690 14401787 -30505783 - MER94 DNA DNA -40 94 4 192 351 98 23 chr21 14402452 14402626 -30504944 + L3b LINE CR1 1180 1366 -217 388 298 23 54 chr21 14402842 14403204 -30504366 + MLT1J2 LTR MaLR 7 445 -5 22 0 0 0 chr21 14403229 14403251 -30504319 + AT_rich Low_complexity Low_complexity 1 22 0 390 309 0 8 chr21 14403465 14403591 -30503979 - MLT1I LTR MaLR -277 132 8 489 288 27 14 chr21 14404416 14404635 -30502935 - L1MC5 LINE L1 -32 7929 7708 2348 248 58 20 chr21 14405818 14406524 -30501046 - L1ME1 LINE L1 -20 6146 5414 538 217 63 0 chr21 14406521 14406664 -30500906 - L1ME1 LINE L1 -2471 3675 3524 * 4896 270 77 50 chr21 14406686 14407202 -30500368 - L1MEc LINE L1 -748 5467 4966 1739 131 0 15 chr21 14407202 14407462 -30500108 + AluSx SINE Alu 40 295 -17 4896 270 77 50 chr21 14407462 14409455 -30498115 - L1MEc LINE L1 -1249 4966 3028 2220 55 0 0 chr21 14409455 14409751 -30497819 - AluY SINE Alu 0 305 10 4896 270 77 50 chr21 14409751 14411556 -30496014 - L1MEc LINE L1 -3187 3028 1073 1128 181 28 14 chr21 14411559 14411775 -30495795 - AluSx SINE Alu -76 236 18 1920 138 0 3 chr21 14411807 14412113 -30495457 - AluSx SINE Alu 0 305 1 2357 167 26 72 chr21 14413425 14413463 -30494107 - MLT2B2 LTR ERVL 0 515 477 497 68 14 0 chr21 14413463 14413537 -30494033 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 2263 99 0 0 chr21 14413547 14413841 -30493729 + AluSg SINE Alu 1 294 -16 2357 167 26 72 chr21 14413841 14414330 -30493240 - MLT2B2 LTR ERVL -47 468 2 465 251 119 61 chr21 14414421 14414657 -30492913 - MIR SINE MIR 0 262 1 318 26 0 0 chr21 14415430 14415469 -30492101 + (TG)n Simple_repeat Simple_repeat 2 40 0 317 382 88 8 chr21 14415482 14415720 -30491850 + L2 LINE L2 2499 2755 -559 260 169 34 0 chr21 14415858 14415917 -30491653 + MER112 DNA MER1_type 67 127 -133 242 310 97 45 chr21 14415935 14416090 -30491480 + L2 LINE L2 3139 3301 -12 1096 136 124 33 chr21 14417584 14417891 -30489679 - L1M2 LINE L1 -748 5398 5202 * 9173 192 21 10 chr21 14417883 14419880 -30487690 - L1M2 LINE L1 -1417 4729 2710 310 234 199 55 chr21 14420509 14420710 -30486860 - L2 LINE L2 -82 3231 3002 386 304 120 40 chr21 14421171 14421497 -30486073 - L3 LINE CR1 -451 1126 775 3434 163 77 58 chr21 14421987 14422207 -30485363 - L1M LINE L1 -783 5363 5149 2443 28 0 7 chr21 14422207 14422522 -30485048 - AluY SINE Alu 0 313 1 3434 163 77 58 chr21 14422522 14422913 -30484657 - L1M LINE L1 -997 5149 4763 2239 110 7 0 chr21 14422913 14423221 -30484349 - AluSx SINE Alu 0 312 3 3434 163 77 58 chr21 14423221 14423463 -30484107 - L1M LINE L1 -1383 4763 4527 883 188 6 0 chr21 14423466 14423647 -30483923 + L1 LINE L1 4172 4353 -1793 26 50 0 0 chr21 14423750 14423790 -30483780 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr21 14424171 14424199 -30483371 + AT_rich Low_complexity Low_complexity 1 28 0 1975 187 15 20 chr21 14424631 14425027 -30482543 - MSTD LTR MaLR 0 396 3 811 278 160 14 chr21 14425296 14425876 -30481694 - L2 LINE L2 -4 3309 2635 1523 206 79 27 chr21 14425938 14426306 -30481264 - MER82 DNA MER2_type -65 588 202 928 228 35 0 chr21 14426797 14426994 -30480576 - MER82 DNA MER2_type -449 204 1 1705 150 53 71 chr21 14427024 14427417 -30480153 + MLT1B LTR MaLR 1 386 -4 288 324 18 0 chr21 14427468 14427579 -30479991 - L2 LINE L2 -735 2579 2467 25 0 0 0 chr21 14427819 14427844 -30479726 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 14428882 14428911 -30478659 + AT_rich Low_complexity Low_complexity 1 29 0 349 340 5 65 chr21 14429108 14429323 -30478247 - MIR SINE MIR -55 207 6 284 284 42 60 chr21 14431586 14431801 -30475769 + L1ME LINE L1 544 754 -5316 1176 163 144 38 chr21 14431839 14431877 -30475693 + AluJo SINE Alu 3 36 -276 2050 113 76 48 chr21 14431877 14432065 -30475505 - THE1B LTR MaLR 0 364 183 1941 86 16 0 chr21 14432065 14432322 -30475248 - AluY SINE Alu -14 297 37 2050 113 76 48 chr21 14432322 14432487 -30475083 - THE1B LTR MaLR -181 183 1 1176 163 144 38 chr21 14432487 14432712 -30474858 + AluJo SINE Alu 36 294 -18 1457 124 0 5 chr21 14432799 14433009 -30474561 + AluSg/x SINE Alu 97 305 -5 394 256 108 35 chr21 14433020 14433223 -30474347 + L1ME LINE L1 839 1056 -5027 662 203 125 57 chr21 14433599 14433791 -30473779 - MER3 DNA MER1_type 0 209 5 336 335 92 57 chr21 14434005 14434546 -30473024 - HAL1 LINE L1 -1843 664 105 704 267 59 59 chr21 14434906 14435161 -30472409 + MIR SINE MIR 6 260 -2 26 0 0 0 chr21 14436315 14436341 -30471229 + AT_rich Low_complexity Low_complexity 1 26 0 608 297 98 14 chr21 14437268 14437685 -30469885 - L1M4 LINE L1 -1219 4927 4476 315 309 47 7 chr21 14437774 14437923 -30469647 - L1M4 LINE L1 -1796 4350 4196 408 219 93 55 chr21 14437935 14438118 -30469452 - L1M4 LINE L1 -2028 4118 3929 810 276 31 37 chr21 14438118 14438561 -30469009 - L1P5 LINE L1 -617 5537 5080 2157 102 6 10 chr21 14438561 14438874 -30468696 - AluSx SINE Alu 0 312 1 810 276 31 37 chr21 14438874 14439025 -30468545 - L1P5 LINE L1 -1074 5080 4930 208 120 40 0 chr21 14439025 14439075 -30468495 + (TA)n Simple_repeat Simple_repeat 1 52 0 729 179 6 48 chr21 14439610 14439778 -30467792 - L1PA15 LINE L1 0 6165 6005 375 178 14 14 chr21 14439969 14440042 -30467528 - Tigger2 DNA MER2_type -2645 73 1 397 286 14 11 chr21 14440043 14440231 -30467339 - L1MEd LINE L1 -4549 1580 1434 723 281 80 48 chr21 14440246 14440976 -30466594 - L1MEd LINE L1 -4865 1254 580 23 33 0 0 chr21 14444479 14444509 -30463061 + AT_rich Low_complexity Low_complexity 1 30 0 272 301 142 0 chr21 14444735 14444848 -30462722 + MIR3 SINE MIR 67 195 -13 22 0 0 0 chr21 14444939 14444961 -30462609 + AT_rich Low_complexity Low_complexity 1 22 0 6664 79 0 5 chr21 14445320 14446482 -30461088 - L1PA7 LINE L1 0 6154 4992 25861 131 12 73 chr21 14446482 14451477 -30456093 - L1PA7 LINE L1 -1441 4705 12 22 0 0 0 chr21 14451891 14451913 -30455657 + AT_rich Low_complexity Low_complexity 1 22 0 192 333 20 30 chr21 14452691 14452790 -30454780 + MIR SINE MIR 21 118 -90 332 239 11 11 chr21 14453067 14453155 -30454415 + MLT1I LTR MaLR 316 403 -6 231 253 114 38 chr21 14453249 14453328 -30454242 - MIR SINE MIR -61 147 63 3416 140 15 2 chr21 14453705 14454225 -30453345 + MER1A DNA MER1_type 1 527 0 316 267 0 12 chr21 14454339 14454425 -30453145 + MIR SINE MIR 173 257 -5 257 279 58 0 chr21 14454599 14454685 -30452885 - MIR SINE MIR -101 161 71 309 365 1 0 chr21 14455760 14455877 -30451693 + MIR SINE MIR 34 150 -63 388 299 43 18 chr21 14455882 14456046 -30451524 + MIR SINE MIR 5 172 -90 821 121 0 0 chr21 14456108 14456232 -30451338 + MER2 DNA MER2_type 67 190 -155 6052 155 89 6 chr21 14456232 14457076 -30450494 + Tigger3b DNA MER2_type 1 965 -2063 2051 148 44 101 chr21 14457076 14457530 -30450040 - MSTA LTR MaLR 0 428 1 6052 155 89 6 chr21 14457530 14457822 -30449748 + Tigger3b DNA MER2_type 965 1231 0 339 256 26 0 chr21 14457890 14457968 -30449602 + MER2 DNA MER2_type 264 343 -2 713 251 103 0 chr21 14457996 14458199 -30449371 - MER58A DNA MER1_type 0 224 1 583 304 113 4 chr21 14458513 14458770 -30448800 + L2 LINE L2 2298 2582 -732 444 188 20 50 chr21 14459117 14459218 -30448352 + Tigger1 DNA MER2_type 2 99 -2319 3908 113 41 2 chr21 14459236 14459840 -30447730 - L1PA13 LINE L1 -2 6812 6185 2026 109 0 0 chr21 14459854 14460120 -30447450 - AluSc SINE Alu -8 301 36 14731 180 14 11 chr21 14460120 14463055 -30444515 - L1PA13 LINE L1 -749 6048 3104 7026 230 82 6 chr21 14463045 14464588 -30442982 - L1PA13 LINE L1 -5123 1664 4 * 12853 138 17 5 chr21 14464605 14466630 -30440940 + Tigger1 DNA MER2_type 103 2150 -268 1487 170 8 0 chr21 14466777 14467036 -30440534 + Tigger1 DNA MER2_type 2158 2418 0 21 0 0 0 chr21 14467251 14467272 -30440298 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 14467526 14467564 -30440006 + AT_rich Low_complexity Low_complexity 1 38 0 2870 6 0 0 chr21 14467742 14468053 -30439517 - AluYa5 SINE Alu 0 311 1 200 204 0 45 chr21 14468227 14468271 -30439299 + L2 LINE L2 3211 3252 -20 18133 29 1 1 chr21 14468312 14471249 -30436321 - L1PA3 LINE L1 -3 6152 3214 366 298 57 14 chr21 14471250 14471391 -30436179 + MIR SINE MIR 116 262 0 203 276 0 0 chr21 14471391 14471449 -30436121 + T-rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr21 14472049 14472072 -30435498 + AT_rich Low_complexity Low_complexity 1 23 0 338 0 24 0 chr21 14472779 14472821 -30434749 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 540 202 12 89 chr21 14473636 14473700 -30433870 + MIR SINE MIR 106 173 -89 2038 128 7 3 chr21 14473700 14473997 -30433573 - AluSx SINE Alu -14 298 1 540 202 12 89 chr21 14473997 14474100 -30433470 + MIR SINE MIR 173 260 -2 1668 144 27 33 chr21 14474318 14474617 -30432953 + AluJb SINE Alu 1 297 -15 620 307 9 42 chr21 14474940 14475155 -30432415 + MIR SINE MIR 49 256 -6 2071 135 0 0 chr21 14475509 14475806 -30431764 - AluSg SINE Alu -13 297 1 716 236 33 6 chr21 14476692 14476874 -30430696 + MER5A DNA MER1_type 1 187 -2 338 260 172 26 chr21 14476874 14477060 -30430510 + MARNA DNA Mariner 32 245 -341 22 0 0 0 chr21 14478174 14478196 -30429374 + AT_rich Low_complexity Low_complexity 1 22 0 1779 167 7 0 chr21 14478200 14478499 -30429071 + AluSx SINE Alu 1 301 -11 945 140 11 6 chr21 14478527 14478706 -30428864 + CT-rich Low_complexity Low_complexity 1 180 0 1517 153 68 82 chr21 14478745 14479014 -30428556 - MER46B DNA MER2_type -2496 235 96 1913 58 0 0 chr21 14479014 14479254 -30428316 - L1PA4 LINE L1 -3 6152 5913 1517 153 68 82 chr21 14479254 14479349 -30428221 - MER46B DNA MER2_type -2635 96 1 25 31 0 0 chr21 14479490 14479522 -30428048 + AT_rich Low_complexity Low_complexity 1 32 0 1843 119 56 0 chr21 14479593 14479861 -30427709 - AluSx SINE Alu -10 302 20 977 168 12 0 chr21 14480456 14480629 -30426941 + MER5B DNA MER1_type 4 178 0 974 227 134 7 chr21 14481748 14482047 -30425523 + MER44D DNA MER2_type 3 609 0 2125 88 0 7 chr21 14482115 14482398 -30425172 - AluSc SINE Alu 0 309 29 378 0 0 0 chr21 14483601 14483643 -30423927 + (A)n Simple_repeat Simple_repeat 1 42 0 230 182 18 18 chr21 14483698 14483753 -30423817 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 396 0 0 0 chr21 14484976 14485020 -30422550 + (TG)n Simple_repeat Simple_repeat 2 45 0 293 318 113 33 chr21 14485508 14485659 -30421911 + MIR3 SINE MIR 44 206 -2 249 295 48 60 chr21 14486230 14486396 -30421174 + MIR3 SINE MIR 32 195 -13 21 0 0 0 chr21 14486522 14486543 -30421027 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr21 14488085 14488112 -30419458 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 303 53 0 chr21 14488479 14488555 -30419015 + MIR3 SINE MIR 108 187 -21 10987 133 55 34 chr21 14488733 14489423 -30418147 - Tigger1 DNA MER2_type 0 2418 1744 2514 69 0 0 chr21 14489423 14489727 -30417843 - AluY SINE Alu -7 304 1 10987 133 55 34 chr21 14489727 14490772 -30416798 - Tigger1 DNA MER2_type -674 1744 722 2637 45 0 0 chr21 14490772 14491083 -30416487 - AluY SINE Alu 0 311 1 10987 133 55 34 chr21 14491083 14491321 -30416249 - Tigger1 DNA MER2_type -1696 722 490 1808 142 51 0 chr21 14491321 14491476 -30416094 - AluSx SINE Alu -21 291 114 213 65 0 0 chr21 14491476 14491507 -30416063 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1808 142 51 0 chr21 14491507 14491626 -30415944 - AluSx SINE Alu -198 114 3 10987 133 55 34 chr21 14491626 14492046 -30415524 - Tigger1 DNA MER2_type -1928 490 1 233 259 35 0 chr21 14492264 14492322 -30415248 + L2 LINE L2 3254 3313 0 219 185 19 0 chr21 14492367 14492421 -30415149 + (TA)n Simple_repeat Simple_repeat 1 55 0 295 152 53 12 chr21 14492506 14492677 -30414893 + (TA)n Simple_repeat Simple_repeat 1 178 0 524 266 167 5 chr21 14493761 14493953 -30413617 + MIR SINE MIR 31 253 -9 346 364 35 12 chr21 14496318 14496491 -30411079 - MIR SINE MIR -36 226 50 195 42 0 0 chr21 14496753 14496777 -30410793 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 280 214 0 0 chr21 14497010 14497080 -30410490 + L1MA4 LINE L1 6220 6289 -11 29 0 0 0 chr21 14497181 14497210 -30410360 + AT_rich Low_complexity Low_complexity 1 29 0 211 381 0 14 chr21 14497817 14497956 -30409614 - L2 LINE L2 -251 3062 2926 374 274 110 46 chr21 14499968 14500296 -30407274 - HAL1 LINE L1 -115 2392 2044 601 128 8 8 chr21 14500297 14500414 -30407156 + (TCCC)n Simple_repeat Simple_repeat 3 119 0 2137 93 7 10 chr21 14500416 14500705 -30406865 - AluSx SINE Alu -14 298 11 267 331 6 11 chr21 14500706 14500814 -30406756 + CT-rich Low_complexity Low_complexity 3 177 0 223 47 0 47 chr21 14501131 14501174 -30406396 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 501 226 15 13 chr21 14501204 14501336 -30406234 + MLT1D LTR MaLR 365 615 -9 559 201 13 0 chr21 14501592 14501741 -30405829 + C-rich Low_complexity Low_complexity 1 151 0 201 374 56 0 chr21 14501756 14501863 -30405707 - L2 LINE L2 -30 3283 3171 2312 103 0 0 chr21 14501946 14502327 -30405243 + AluSg SINE Alu 1 381 0 267 315 117 49 chr21 14502592 14502644 -30404926 - L2 LINE L2 -459 2855 2808 225 0 0 0 chr21 14502644 14502669 -30404901 + (TTA)n Simple_repeat Simple_repeat 2 26 0 267 315 117 49 chr21 14502669 14502924 -30404646 - L2 LINE L2 -506 2808 2527 869 196 29 0 chr21 14503341 14503514 -30404056 - AluJo SINE Alu -134 178 1 584 174 7 20 chr21 14505628 14505777 -30401793 + CT-rich Low_complexity Low_complexity 3 149 0 946 310 58 19 chr21 14506690 14507067 -30400503 + L2 LINE L2 2922 3313 0 313 350 0 0 chr21 14507086 14507209 -30400361 - L1ME LINE L1 -521 5600 5478 2149 90 3 10 chr21 14507266 14507567 -30400003 - AluSg SINE Alu -3 307 9 3018 138 15 4 chr21 14507739 14508219 -30399351 - L1PA16 LINE L1 -14 6152 5668 37 23 0 0 chr21 14509756 14509800 -30397770 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr21 14510565 14510590 -30396980 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 14511694 14511716 -30395854 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr21 14515143 14515176 -30392394 + (TG)n Simple_repeat Simple_repeat 1 33 0 2197 93 7 29 chr21 14515615 14515925 -30391645 - AluSc SINE Alu -5 304 2 310 273 79 30 chr21 14515951 14516116 -30391454 - L1MEd LINE L1 -4972 1147 975 659 176 0 8 chr21 14517893 14518012 -30389558 - MSTD LTR MaLR -1 395 278 4508 80 20 2 chr21 14518082 14518694 -30388876 - L1PA10 LINE L1 -10 6158 5536 848 222 38 5 chr21 14518817 14519002 -30388568 - MSTD LTR MaLR -205 191 1 194 371 215 5 chr21 14519072 14519439 -30388131 + L2 LINE L2 2040 2483 -831 621 321 64 0 chr21 14519548 14519797 -30387773 - LTR16C LTR ERVL -222 269 5 343 297 35 78 chr21 14519812 14520078 -30387492 - L1MC/D LINE L1 -372 5749 5497 2481 74 0 13 chr21 14520078 14520387 -30387183 - AluSp SINE Alu -8 305 1 343 297 35 78 chr21 14520387 14520483 -30387087 - L1MC/D LINE L1 -624 5497 5398 396 319 48 14 chr21 14520595 14520802 -30386768 - L1MC/D LINE L1 -784 5362 5149 2196 122 0 10 chr21 14521261 14521565 -30386005 - AluSx SINE Alu -9 303 3 384 302 141 60 chr21 14522503 14522903 -30384667 - MLT1J LTR MaLR -42 408 1 1980 113 3 75 chr21 14523772 14524092 -30383478 + AluSx SINE Alu 4 300 -12 26 64 0 0 chr21 14524197 14524244 -30383326 + AT_rich Low_complexity Low_complexity 1 47 0 26 82 0 0 chr21 14524930 14524991 -30382579 + AT_rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr21 14525809 14525836 -30381734 + (CA)n Simple_repeat Simple_repeat 2 28 0 2087 106 7 0 chr21 14527228 14527538 -30380032 + AluSx SINE Alu 1 312 0 23 33 0 0 chr21 14528843 14528873 -30378697 + AT_rich Low_complexity Low_complexity 1 30 0 246 238 0 0 chr21 14529160 14529202 -30378368 - MLT1J2 LTR MaLR -141 309 268 293 300 92 8 chr21 14529240 14529370 -30378200 - MLT1J2 LTR MaLR -263 187 47 2045 127 7 10 chr21 14532509 14532809 -30374761 - AluSp SINE Alu -13 300 2 358 306 90 0 chr21 14534594 14534738 -30372832 + MIR SINE MIR 50 206 -56 344 111 16 0 chr21 14536044 14536107 -30371463 + (TA)n Simple_repeat Simple_repeat 1 64 0 2530 67 0 10 chr21 14536109 14536446 -30371124 - AluY SINE Alu 0 334 1 24 0 0 0 chr21 14536456 14536480 -30371090 + AT_rich Low_complexity Low_complexity 1 24 0 354 360 75 53 chr21 14537599 14537908 -30369662 - L2 LINE L2 -460 2854 2553 288 0 0 0 chr21 14537908 14537940 -30369630 + (TG)n Simple_repeat Simple_repeat 2 33 0 2152 121 16 0 chr21 14537944 14538251 -30369319 - AluSp SINE Alu -1 312 1 354 360 75 53 chr21 14538251 14538563 -30369007 - L2 LINE L2 -763 2551 2214 342 0 0 0 chr21 14538631 14538669 -30368901 + (TA)n Simple_repeat Simple_repeat 2 39 0 211 327 94 66 chr21 14538685 14539003 -30368567 - L2 LINE L2 -1387 1927 1601 303 340 125 54 chr21 14539148 14539539 -30368031 + L2 LINE L2 2330 2748 -566 388 317 8 0 chr21 14541651 14541771 -30365799 + L2 LINE L2 3190 3310 -3 254 273 71 30 chr21 14541800 14541899 -30365671 + MIR SINE MIR 44 146 -62 29946 120 19 53 chr21 14542172 14548538 -30359032 + L1PA7 LINE L1 13 6149 -5 26 0 0 0 chr21 14549095 14549121 -30358449 + AT_rich Low_complexity Low_complexity 1 26 0 757 253 25 10 chr21 14549926 14550124 -30357446 + MIR SINE MIR 46 246 -16 326 328 81 57 chr21 14550179 14550514 -30357056 - L1M4 LINE L1 -1839 4307 3965 21 36 0 0 chr21 14550561 14550589 -30356981 + AT_rich Low_complexity Low_complexity 1 28 0 274 143 0 0 chr21 14551284 14551333 -30356237 - L1MC4 LINE L1 -1339 6703 6655 1793 174 0 10 chr21 14551333 14551631 -30355939 - AluSx SINE Alu -7 305 11 203 328 15 0 chr21 14552394 14552461 -30355109 - L2 LINE L2 0 3272 3205 25 31 0 0 chr21 14552701 14552733 -30354837 + AT_rich Low_complexity Low_complexity 1 32 0 386 323 47 28 chr21 14553788 14554042 -30353528 - L3 LINE CR1 -593 984 726 27 62 0 0 chr21 14555012 14555060 -30352510 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr21 14555119 14555149 -30352421 + AT_rich Low_complexity Low_complexity 1 30 0 270 246 15 0 chr21 14555393 14555458 -30352112 - MER5B DNA MER1_type -3 175 110 259 206 137 14 chr21 14555463 14555536 -30352034 + L1MA10 LINE L1 6213 6294 -40 446 319 0 8 chr21 14555624 14555743 -30351827 - MER5B DNA MER1_type -59 119 2 251 209 0 70 chr21 14555810 14555896 -30351674 - L1MC4 LINE L1 -1339 6703 6624 180 0 0 0 chr21 14555896 14555916 -30351654 + (TG)n Simple_repeat Simple_repeat 2 21 0 1731 167 7 10 chr21 14555933 14556226 -30351344 - AluJo SINE Alu -20 292 1 1418 142 0 9 chr21 14556276 14556487 -30351083 + AluJb SINE Alu 87 295 -17 275 324 62 11 chr21 14556963 14557139 -30350431 + Tigger8 DNA MER2_type 161 345 -321 331 263 0 0 chr21 14557260 14557340 -30350230 - MLT1I LTR MaLR -6 403 324 2030 142 7 0 chr21 14557354 14557663 -30349907 - AluSx SINE Alu 0 312 2 325 300 11 0 chr21 14557781 14557871 -30349699 - MLT1I LTR MaLR -280 129 39 683 192 0 0 chr21 14558611 14558731 -30348839 - FLAM_A SINE Alu -13 129 10 21 0 0 0 chr21 14558849 14558870 -30348700 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr21 14560742 14560772 -30346798 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr21 14561613 14561651 -30345919 + AT_rich Low_complexity Low_complexity 1 38 0 2059 133 3 7 chr21 14561998 14562307 -30345263 + AluSx SINE Alu 5 312 0 23 33 0 0 chr21 14562694 14562724 -30344846 + AT_rich Low_complexity Low_complexity 1 30 0 1612 199 6 18 chr21 14564333 14564670 -30342900 - MLT1A1 LTR MaLR -7 358 26 269 337 23 86 chr21 14565234 14565409 -30342161 - MER5A DNA MER1_type -5 184 21 2034 124 7 0 chr21 14565548 14565847 -30341723 + AluSx SINE Alu 1 301 -11 387 0 0 0 chr21 14565866 14565909 -30341661 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2069 101 0 37 chr21 14565909 14566207 -30341363 - AluSx SINE Alu -25 287 1 2008 121 50 0 chr21 14567585 14567883 -30339687 - AluSq SINE Alu 0 313 1 228 291 112 15 chr21 14568142 14568276 -30339294 - MLT1L LTR MaLR -7 608 462 186 167 0 0 chr21 14569060 14569096 -30338474 + (TA)n Simple_repeat Simple_repeat 2 37 0 238 0 53 26 chr21 14569203 14569241 -30338329 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1341 97 6 0 chr21 14569244 14569420 -30338150 - AluSg/x SINE Alu -27 283 107 506 139 13 0 chr21 14569454 14569533 -30338037 - L1PB4 LINE L1 -12 6144 6065 1816 159 43 35 chr21 14571495 14571866 -30335704 - THE1C LTR MaLR -1 374 1 186 365 0 27 chr21 14572254 14572328 -30335242 - L3 LINE CR1 -942 635 564 24 32 0 0 chr21 14575916 14575947 -30331623 + AT_rich Low_complexity Low_complexity 1 31 0 255 208 21 10 chr21 14577735 14577831 -30329739 + (TA)n Simple_repeat Simple_repeat 1 97 0 364 307 45 12 chr21 14577919 14578163 -30329407 + HAL1b LINE L1 629 880 -468 303 28 0 0 chr21 14578414 14578450 -30329120 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 252 0 0 0 chr21 14578567 14578595 -30328975 + (T)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr21 14579195 14579219 -30328351 + AT_rich Low_complexity Low_complexity 1 24 0 2155 108 7 0 chr21 14580572 14580867 -30326703 - AluSq SINE Alu -16 297 1 441 279 191 5 chr21 14580964 14581179 -30326391 + MIR SINE MIR 3 257 -5 311 78 20 0 chr21 14581679 14581730 -30325840 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 184 265 153 31 chr21 14582393 14582491 -30325079 + MIR3 SINE MIR 93 202 -6 1704 103 0 0 chr21 14583344 14583567 -30324003 + AluSg/x SINE Alu 78 300 -12 349 233 16 78 chr21 14583911 14584040 -30323530 - MLT1J LTR MaLR -52 459 339 237 356 78 11 chr21 14585628 14585718 -30321852 - L2 LINE L2 -15 3257 3162 639 294 72 8 chr21 14587775 14588010 -30319560 - MIR SINE MIR -10 252 3 960 208 30 118 chr21 14588901 14589301 -30318269 - MLT1A1 LTR MaLR 0 365 1 313 214 0 0 chr21 14589352 14589408 -30318162 - Charlie5 DNA MER1_type -2556 56 1 198 0 0 0 chr21 14590948 14590970 -30316600 + (A)n Simple_repeat Simple_repeat 1 22 0 239 104 21 0 chr21 14590990 14591038 -30316532 + (GA)n Simple_repeat Simple_repeat 2 50 0 312 348 126 0 chr21 14591131 14591266 -30316304 + MIR SINE MIR 20 171 -91 213 382 59 0 chr21 14591259 14591361 -30316209 + L2 LINE L2 3206 3313 0 * 2319 107 0 0 chr21 14591365 14591664 -30315906 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr21 14591683 14591720 -30315850 + AT_rich Low_complexity Low_complexity 1 37 0 1989 147 0 0 chr21 14592935 14593235 -30314335 + AluSx SINE Alu 1 300 -12 499 323 106 4 chr21 14593960 14594186 -30313384 - MIR SINE MIR 0 262 14 269 380 82 0 chr21 14594719 14594877 -30312693 - MIR SINE MIR -87 175 5 1276 208 64 69 chr21 14595182 14595571 -30311999 - MLT1B LTR MaLR -3 387 1 26 0 0 0 chr21 14596408 14596434 -30311136 + AT_rich Low_complexity Low_complexity 1 26 0 423 0 0 0 chr21 14602492 14602539 -30305031 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr21 14602779 14602804 -30304766 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr21 14602856 14602893 -30304677 + AT_rich Low_complexity Low_complexity 1 37 0 199 310 0 46 chr21 14604849 14604936 -30302634 + MIR SINE MIR 59 141 -121 200 375 21 0 chr21 14607246 14607342 -30300228 - MIR3 SINE MIR 0 208 111 183 42 0 0 chr21 14608061 14608085 -30299485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2624 10 0 7 chr21 14608145 14608445 -30299125 - AluYb8 SINE Alu -17 301 4 1000 322 94 26 chr21 14610293 14611197 -30296373 + L2 LINE L2 2339 3309 -4 225 361 136 16 chr21 14611253 14611444 -30296126 + MIR SINE MIR 30 243 -19 729 153 0 0 chr21 14611486 14611597 -30295973 + AluSg/x SINE Alu 173 283 -29 2778 0 0 7 chr21 14613886 14614194 -30293376 - AluY SINE Alu -5 306 1 677 208 13 13 chr21 14614194 14614343 -30293227 - L1MD3 LINE L1 -7 7988 7837 1160 106 12 0 chr21 14614400 14614586 -30292984 + AluSp SINE Alu 120 307 0 904 322 42 21 chr21 14615185 14615592 -30291978 + L2 LINE L2 2420 2838 -476 2285 128 11 13 chr21 14615592 14615968 -30291602 + THE1C LTR MaLR 1 375 0 904 322 42 21 chr21 14615968 14615986 -30291584 + L2 LINE L2 2838 2854 -460 1012 91 0 0 chr21 14617030 14617162 -30290408 + AluSg SINE Alu 2 133 -177 2428 88 0 0 chr21 14617162 14617470 -30290100 + AluSg SINE Alu 1 308 -2 25 51 0 0 chr21 14617960 14617999 -30289571 + AT_rich Low_complexity Low_complexity 1 39 0 1549 162 52 0 chr21 14619001 14619273 -30288297 + AluSx SINE Alu 1 286 -26 22 35 0 0 chr21 14620518 14620547 -30287023 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 14621459 14621487 -30286083 + AT_rich Low_complexity Low_complexity 1 28 0 853 176 176 32 chr21 14621677 14621955 -30285615 + L1MA9 LINE L1 5995 6312 0 222 109 0 65 chr21 14623547 14623593 -30283977 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 23 33 0 0 chr21 14624205 14624235 -30283335 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 14624805 14624831 -30282739 + AT_rich Low_complexity Low_complexity 1 26 0 229 323 15 0 chr21 14629945 14630010 -30277560 + L2 LINE L2 3248 3313 0 323 311 7 13 chr21 14630295 14630446 -30277124 + MER103 DNA DNA 10 159 -7 827 256 5 28 chr21 14630493 14630704 -30276866 - MER63A DNA MER1_type -4 206 1 246 352 65 37 chr21 14631612 14631720 -30275850 - L2 LINE L2 -24 3248 3138 250 64 43 0 chr21 14631842 14631889 -30275681 - LTR66 LTR ERVL -172 438 390 27 29 0 0 chr21 14632602 14632636 -30274934 + AT_rich Low_complexity Low_complexity 1 34 0 28 91 0 0 chr21 14633513 14633590 -30273980 + AT_rich Low_complexity Low_complexity 1 77 0 363 229 17 8 chr21 14633874 14634121 -30273449 + (TA)n Simple_repeat Simple_repeat 1 249 0 368 200 13 0 chr21 14634600 14634669 -30272901 - MER5A DNA MER1_type -87 102 33 315 307 106 22 chr21 14634669 14634880 -30272690 + MIR3 SINE MIR 1 218 -44 290 311 0 0 chr21 14635057 14635131 -30272439 - L2 LINE L2 0 3272 3199 349 324 43 27 chr21 14635944 14636129 -30271441 + MIR SINE MIR 2 189 -73 182 333 50 0 chr21 14636618 14636678 -30270892 - L2 LINE L2 -5 3308 3246 689 313 40 36 chr21 14636752 14637277 -30270293 - L2 LINE L2 -158 3155 2636 276 325 130 13 chr21 14637279 14637433 -30270137 - MER63A DNA MER1_type 0 210 39 191 114 29 0 chr21 14637464 14637499 -30270071 + CT-rich Low_complexity Low_complexity 1 36 0 927 304 18 70 chr21 14637597 14638051 -30269519 - L2 LINE L2 -675 2639 2210 23 0 0 0 chr21 14638167 14638190 -30269380 + AT_rich Low_complexity Low_complexity 1 23 0 204 300 83 42 chr21 14638309 14638429 -30269141 - MER5A DNA MER1_type -2 187 63 24 53 0 0 chr21 14638540 14638578 -30268992 + AT_rich Low_complexity Low_complexity 1 38 0 209 205 0 0 chr21 14640262 14640301 -30267269 + (TATG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr21 14641056 14641079 -30266491 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 14642025 14642050 -30265520 + AT_rich Low_complexity Low_complexity 1 25 0 292 174 41 0 chr21 14642421 14642542 -30265028 + (TA)n Simple_repeat Simple_repeat 1 126 0 262 211 63 0 chr21 14643461 14643556 -30264014 + (TA)n Simple_repeat Simple_repeat 2 102 0 398 19 0 19 chr21 14643757 14643809 -30263761 + (TG)n Simple_repeat Simple_repeat 2 52 0 700 295 52 71 chr21 14643896 14644438 -30263132 - L2 LINE L2 0 3313 2730 2136 109 3 0 chr21 14644497 14644790 -30262780 + AluSc SINE Alu 1 294 -15 23 68 0 0 chr21 14645657 14645701 -30261869 + AT_rich Low_complexity Low_complexity 1 44 0 797 219 139 14 chr21 14647256 14647544 -30260026 + MER5C DNA MER1_type 1 324 0 212 264 40 80 chr21 14647544 14647601 -30259969 + L3 LINE CR1 910 961 -616 221 264 28 42 chr21 14648839 14648911 -30258659 - MER5A DNA MER1_type -110 79 9 402 242 15 152 chr21 14649033 14649231 -30258339 + MIR SINE MIR 26 196 -66 288 237 53 0 chr21 14649235 14649311 -30258259 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr21 14649710 14649732 -30257838 + AT_rich Low_complexity Low_complexity 1 22 0 1224 114 0 0 chr21 14650346 14650522 -30257048 - AluSg/x SINE Alu -10 302 127 1910 230 60 1 chr21 14650575 14651050 -30256520 + L1MB3 LINE L1 5638 6153 -18 1067 138 32 122 chr21 14651301 14651610 -30255960 - MLT1A1 LTR MaLR 0 374 1 198 291 93 12 chr21 14651637 14651723 -30255847 + MIR SINE MIR 170 262 0 2210 119 3 0 chr21 14651975 14652287 -30255283 - AluSp SINE Alu 0 313 1 229 296 25 37 chr21 14652444 14652525 -30255045 - MIR SINE MIR -110 98 19 2336 66 7 3 chr21 14652931 14653232 -30254338 - AluY SINE Alu -9 302 1 398 310 165 12 chr21 14654262 14654517 -30253053 - L1ME4a LINE L1 -3 6118 5825 676 236 189 0 chr21 14655343 14655555 -30252015 + MIR SINE MIR 11 262 0 210 392 42 8 chr21 14655578 14655698 -30251872 - MIR3 SINE MIR -80 128 5 23 33 0 0 chr21 14656793 14656823 -30250747 + AT_rich Low_complexity Low_complexity 1 30 0 229 159 32 0 chr21 14657793 14657856 -30249714 + (TA)n Simple_repeat Simple_repeat 2 66 0 259 279 37 96 chr21 14657899 14658035 -30249535 + MIR SINE MIR 20 147 -115 346 298 192 7 chr21 14658249 14658400 -30249170 - L3 LINE CR1 -1 1576 1398 219 376 45 8 chr21 14658439 14658572 -30248998 - L3 LINE CR1 -303 1274 1137 1708 168 85 0 chr21 14658860 14659188 -30248382 - MER93b LTR ERV1 -17 356 1 628 218 150 51 chr21 14659284 14659578 -30247992 - MER5C DNA MER1_type -1 323 1 220 208 151 82 chr21 14659629 14659788 -30247782 - L2 LINE L2 -55 3258 3089 35 24 0 0 chr21 14659983 14660025 -30247545 + AT_rich Low_complexity Low_complexity 1 42 0 354 332 38 38 chr21 14660027 14660238 -30247332 - L1M4 LINE L1 -2370 3776 3566 265 267 33 25 chr21 14660269 14660389 -30247181 - L1MEd LINE L1 -5084 1035 915 22 0 0 0 chr21 14661464 14661486 -30246084 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr21 14662985 14663028 -30244542 + AT_rich Low_complexity Low_complexity 1 43 0 371 323 145 11 chr21 14663839 14664025 -30243545 - MIR SINE MIR 0 262 52 440 319 43 34 chr21 14664078 14664313 -30243257 + MIR SINE MIR 26 262 0 1774 179 3 3 chr21 14666749 14667039 -30240531 - AluJb SINE Alu -22 290 1 25 65 0 0 chr21 14667304 14667350 -30240220 + AT_rich Low_complexity Low_complexity 1 46 0 229 220 0 0 chr21 14667442 14667492 -30240078 + A-rich Low_complexity Low_complexity 1 50 0 1908 135 3 26 chr21 14667508 14667811 -30239759 - AluSp SINE Alu -17 296 1 1122 209 106 32 chr21 14668054 14668394 -30239176 - MLT1A1 LTR MaLR 0 365 1 633 211 106 19 chr21 14668404 14668565 -30239005 - MLT1A1-int LTR MaLR -11 1724 1550 380 253 71 56 chr21 14668646 14668844 -30238726 - L1ME LINE L1 -306 5815 5615 255 61 0 0 chr21 14669202 14669235 -30238335 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1873 117 50 73 chr21 14669260 14669644 -30237926 + THE1C LTR MaLR 1 375 0 1802 201 110 62 chr21 14669697 14670395 -30237175 + MER50 LTR ERV1 1 732 -2 1315 304 102 43 chr21 14670727 14670953 -30236617 - L2 LINE L2 -378 2936 2725 2551 41 0 10 chr21 14670953 14671267 -30236303 - AluY SINE Alu 0 311 1 1315 304 102 43 chr21 14671267 14671550 -30236020 - L2 LINE L2 -589 2725 2460 2377 109 14 0 chr21 14671550 14671900 -30235670 + THE1A LTR MaLR 1 355 0 1315 304 102 43 chr21 14671900 14672104 -30235466 - L2 LINE L2 -854 2460 2180 243 300 81 19 chr21 14672827 14672987 -30234583 - MIR SINE MIR -46 216 47 200 299 0 13 chr21 14673000 14673077 -30234493 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 0 0 0 chr21 14673354 14673375 -30234195 + AT_rich Low_complexity Low_complexity 1 21 0 1976 133 0 7 chr21 14674132 14674425 -30233145 - AluSx SINE Alu -21 291 1 2039 76 0 0 chr21 14674912 14675174 -30232396 + AluY SINE Alu 37 298 -13 396 0 0 0 chr21 14675327 14675371 -30232199 + (TG)n Simple_repeat Simple_repeat 2 45 0 5058 153 27 3 chr21 14676509 14677396 -30230174 - L1MA6 LINE L1 0 6300 5393 316 167 42 28 chr21 14677407 14677479 -30230091 + L1MCa LINE L1 1992 2064 -4362 310 132 44 59 chr21 14677489 14677557 -30230013 + L1MCa LINE L1 1998 2064 -4362 519 101 75 0 chr21 14677558 14677717 -30229853 + (TA)n Simple_repeat Simple_repeat 1 171 0 225 62 92 0 chr21 14677735 14677800 -30229770 + (TA)n Simple_repeat Simple_repeat 1 71 0 447 59 103 11 chr21 14677818 14678090 -30229480 + (TA)n Simple_repeat Simple_repeat 1 297 0 3049 148 34 40 chr21 14678095 14678771 -30228799 - L1MA6 LINE L1 -759 5387 4716 1617 145 62 6 chr21 14678790 14679115 -30228455 + L1MA5A LINE L1 5955 6297 0 296 138 0 0 chr21 14679120 14679178 -30228392 + L1MA4A LINE L1 6241 6298 -5 24 32 0 0 chr21 14679215 14679246 -30228324 + AT_rich Low_complexity Low_complexity 1 31 0 2876 9 0 0 chr21 14679374 14679690 -30227880 - AluYb8 SINE Alu -2 316 1 194 289 41 113 chr21 14680561 14680755 -30226815 + MIR3 SINE MIR 6 185 -23 204 188 0 0 chr21 14682319 14682351 -30225219 + polypyrimidine Low_complexity Low_complexity 1 32 0 225 209 0 0 chr21 14682437 14682480 -30225090 + L1MC4 LINE L1 6661 6703 -1339 270 211 42 11 chr21 14682480 14682575 -30224995 + (TA)n Simple_repeat Simple_repeat 2 99 0 1863 97 23 0 chr21 14683165 14683339 -30224231 - AluSg SINE Alu -7 303 120 192 40 0 0 chr21 14683339 14683364 -30224206 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1863 97 23 0 chr21 14683364 14683447 -30224123 - AluSg SINE Alu -190 120 40 541 302 62 6 chr21 14685848 14686027 -30221543 - MIR SINE MIR -44 218 30 23 54 0 0 chr21 14686224 14686261 -30221309 + AT_rich Low_complexity Low_complexity 1 37 0 2185 108 3 23 chr21 14686280 14686585 -30220985 + AluSx SINE Alu 2 300 -12 261 0 0 0 chr21 14687066 14687095 -30220475 + (A)n Simple_repeat Simple_repeat 1 29 0 2135 92 3 0 chr21 14687098 14687380 -30220190 + AluSq SINE Alu 1 283 -30 26 64 0 0 chr21 14689403 14689450 -30218120 + AT_rich Low_complexity Low_complexity 1 47 0 619 312 12 47 chr21 14689468 14689601 -30217969 + MIR SINE MIR 19 140 -122 2092 117 0 25 chr21 14689601 14689917 -30217653 + AluSx SINE Alu 1 308 -4 619 312 12 47 chr21 14689917 14690036 -30217534 + MIR SINE MIR 140 262 0 188 310 17 0 chr21 14690158 14690216 -30217354 + L2 LINE L2 1965 2023 -1291 680 310 113 43 chr21 14690377 14691022 -30216548 + L2 LINE L2 2635 3313 0 2244 105 0 3 chr21 14691130 14691424 -30216146 + AluSg SINE Alu 1 293 -17 196 347 0 0 chr21 14694385 14694457 -30213113 - MIR SINE MIR -86 176 105 258 282 0 0 chr21 14695603 14695706 -30211864 + (TA)n Simple_repeat Simple_repeat 1 103 0 239 79 0 26 chr21 14697448 14697486 -30210084 + HSMAR1 DNA Mariner 1 37 -1250 999 50 0 0 chr21 14697759 14697879 -30209691 - AluY SINE Alu -1 310 191 29 28 0 0 chr21 14699523 14699559 -30208011 + AT_rich Low_complexity Low_complexity 1 36 0 633 278 15 30 chr21 14701542 14701740 -30205830 - L2 LINE L2 0 3313 3119 1024 179 58 29 chr21 14701741 14701948 -30205622 + AluJb SINE Alu 2 214 -98 337 343 37 0 chr21 14701977 14702085 -30205485 - L2 LINE L2 -254 3059 2948 2225 117 7 0 chr21 14703789 14704098 -30203472 - AluSx SINE Alu -1 311 1 297 267 0 0 chr21 14704099 14704174 -30203396 - MER103 DNA DNA -79 87 13 22 0 0 0 chr21 14705205 14705227 -30202343 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 14705342 14705365 -30202205 + AT_rich Low_complexity Low_complexity 1 23 0 1172 262 35 11 chr21 14705476 14705842 -30201728 - L1MC4a LINE L1 -7 7801 7427 2508 179 71 54 chr21 14706156 14706459 -30201111 - MLT2B3 LTR ERVL -8 546 229 3381 127 39 6 chr21 14706459 14706995 -30200575 - MER41C LTR ERV1 0 554 1 2508 179 71 54 chr21 14706995 14707228 -30200342 - MLT2B3 LTR ERVL -325 229 1 2510 74 0 0 chr21 14708382 14708692 -30198878 - AluY SINE Alu -1 310 1 899 126 0 20 chr21 14709790 14709941 -30197629 - LTR7 LTR ERV1 0 450 303 833 135 30 31 chr21 14710220 14710388 -30197182 - LTR7 LTR ERV1 -232 218 1 3416 133 6 9 chr21 14710388 14710931 -30196639 - HERVH LTR ERV1 0 7713 7173 26 0 0 0 chr21 14710943 14710969 -30196601 + AT_rich Low_complexity Low_complexity 1 26 0 950 131 7 0 chr21 14710985 14711130 -30196440 - HERVH LTR ERV1 -765 6948 6803 252 0 0 0 chr21 14711132 14711160 -30196410 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6678 39 4 0 chr21 14711160 14711964 -30195606 - L1PA3 LINE L1 -18 6137 5331 1696 206 3 0 chr21 14711964 14712290 -30195280 - HERVH LTR ERV1 -898 6815 6489 6773 216 19 50 chr21 14712290 14714085 -30193485 - HERVH LTR ERV1 -3184 4529 2790 * 8535 144 7 38 chr21 14714059 14715556 -30192014 - HERVH LTR ERV1 -5275 2438 989 896 191 64 20 chr21 14715566 14715770 -30191800 - LTR7 LTR ERV1 0 450 238 882 123 10 20 chr21 14716199 14716367 -30191203 - LTR7 LTR ERV1 -232 218 1 1911 163 31 98 chr21 14717987 14718265 -30189305 - MER21B LTR ERV1 -49 814 519 2217 105 0 3 chr21 14718265 14718561 -30189009 - AluSg SINE Alu -13 297 3 2079 124 3 7 chr21 14718567 14718874 -30188696 - AluSq SINE Alu -7 306 1 1911 163 31 98 chr21 14718874 14719036 -30188534 - MER21B LTR ERV1 -349 514 397 813 188 74 0 chr21 14719036 14719185 -30188385 + AluSg/x SINE Alu 137 296 -16 1641 231 94 22 chr21 14719208 14719571 -30187999 - MER21B LTR ERV1 -460 403 15 14343 150 49 16 chr21 14719576 14721169 -30186401 - Tigger2 DNA MER2_type -4 2714 998 2108 102 44 0 chr21 14721169 14721462 -30186108 - AluSx SINE Alu -6 306 1 14343 150 49 16 chr21 14721462 14722495 -30185075 - Tigger2 DNA MER2_type -1720 998 1 192 40 0 0 chr21 14723338 14723363 -30184207 + (CA)n Simple_repeat Simple_repeat 2 26 0 877 239 4 31 chr21 14723497 14723618 -30183952 + AluJo SINE Alu 1 115 -197 216 0 0 0 chr21 14723618 14723642 -30183928 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 877 239 4 31 chr21 14723642 14723746 -30183824 + AluJo SINE Alu 115 220 -92 636 122 0 14 chr21 14723746 14723877 -30183693 + AluSg/x SINE Alu 84 291 -21 441 335 6 12 chr21 14724755 14724919 -30182651 + MIR SINE MIR 68 230 -32 547 205 5 32 chr21 14725364 14725549 -30182021 + GA-rich Low_complexity Low_complexity 1 180 0 2388 241 67 51 chr21 14727066 14727660 -30179910 - L1MC3 LINE L1 -10 7985 7402 230 130 0 0 chr21 14727660 14727706 -30179864 - LTR66 LTR ERVL -171 439 394 2388 241 67 51 chr21 14727706 14727764 -30179806 - L1MC3 LINE L1 -593 7402 7346 17791 44 6 0 chr21 14727764 14730817 -30176753 - L1PA5 LINE L1 -8 6146 3146 2388 241 67 51 chr21 14730817 14730975 -30176595 - L1MC3 LINE L1 -649 7346 7192 288 0 0 0 chr21 14730975 14731007 -30176563 + (GA)n Simple_repeat Simple_repeat 2 33 0 1889 146 7 26 chr21 14731007 14731316 -30176254 + AluSq SINE Alu 3 305 -8 2388 241 67 51 chr21 14731316 14731748 -30175822 - L1MC3 LINE L1 -802 7193 6675 * 2776 271 83 4 chr21 14731747 14732761 -30174809 - L1M4 LINE L1 -1620 4526 3433 21 36 0 0 chr21 14732790 14732818 -30174752 + AT_rich Low_complexity Low_complexity 1 28 0 389 163 163 31 chr21 14734061 14734159 -30173411 - MLT1E1 LTR MaLR -543 111 1 1969 164 51 0 chr21 14734928 14735299 -30172271 - MLT1B LTR MaLR 0 390 1 276 30 0 0 chr21 14735426 14735459 -30172111 + (TA)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr21 14738165 14738190 -30169380 + (T)n Simple_repeat Simple_repeat 1 25 0 26 50 0 0 chr21 14739731 14739771 -30167799 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr21 14740260 14740290 -30167280 + AT_rich Low_complexity Low_complexity 1 30 0 701 184 7 21 chr21 14743092 14743233 -30164337 - FAM SINE Alu -6 43 1 330 248 150 7 chr21 14745029 14745182 -30162388 - MIR SINE MIR -37 225 51 221 351 71 39 chr21 14746094 14746248 -30161322 - MIR3 SINE MIR -18 190 32 660 247 135 66 chr21 14746621 14746998 -30160572 - L1ME3 LINE L1 -30 6132 5730 2487 68 0 0 chr21 14747492 14747803 -30159767 - AluY SINE Alu 0 311 1 27 29 0 0 chr21 14748527 14748561 -30159009 + AT_rich Low_complexity Low_complexity 1 34 0 28 48 0 0 chr21 14749804 14749846 -30157724 + AT_rich Low_complexity Low_complexity 1 42 0 268 232 0 0 chr21 14751084 14751140 -30156430 + L2 LINE L2 3258 3313 0 329 298 105 18 chr21 14752246 14752417 -30155153 + MIR SINE MIR 18 203 -59 22 0 0 0 chr21 14753288 14753310 -30154260 + AT_rich Low_complexity Low_complexity 1 22 0 213 214 0 0 chr21 14753629 14753671 -30153899 + A-rich Low_complexity Low_complexity 1 42 0 205 364 0 0 chr21 14754453 14754519 -30153051 + MIR SINE MIR 57 122 -140 445 219 248 12 chr21 14754523 14754765 -30152805 - MER46C DNA MER2_type -21 317 19 219 300 0 0 chr21 14754788 14754848 -30152722 + MIR SINE MIR 153 212 -50 1955 161 0 3 chr21 14754857 14755162 -30152408 + AluSx SINE Alu 7 310 -2 2174 122 0 0 chr21 14756166 14756469 -30151101 - AluSc SINE Alu -6 303 1 1677 177 7 0 chr21 14757518 14757789 -30149781 + AluJb SINE Alu 1 273 -39 219 36 0 0 chr21 14758216 14758244 -30149326 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2126 127 0 7 chr21 14758319 14758619 -30148951 - AluSx SINE Alu -11 301 4 22 35 0 0 chr21 14758657 14758686 -30148884 + AT_rich Low_complexity Low_complexity 1 29 0 2297 100 0 6 chr21 14759099 14759410 -30148160 + AluSg SINE Alu 1 309 -1 446 361 58 45 chr21 14759809 14760205 -30147365 + L2 LINE L2 2862 3262 -10 297 302 39 77 chr21 14760486 14760668 -30146902 - MIR3 SINE MIR -3 205 31 1513 202 137 41 chr21 14760711 14761034 -30146536 - L1MD3 LINE L1 -14 7981 7690 6175 31 1 3 chr21 14761034 14761775 -30145795 - L1PA5 LINE L1 -1 6153 5414 1513 202 137 41 chr21 14761775 14762397 -30145173 - L1MD3 LINE L1 -305 7690 6759 2301 238 62 29 chr21 14762397 14763167 -30144403 - L1MC4a LINE L1 -1238 6570 5775 5766 161 58 8 chr21 14763170 14764260 -30143310 + Tigger3b DNA MER2_type 1 1144 -87 583 156 56 56 chr21 14764344 14764504 -30143066 + Tigger3b DNA MER2_type 1073 1232 0 423 261 266 0 chr21 14764506 14764705 -30142865 - L1MC4a LINE L1 -2037 5771 5520 625 280 72 84 chr21 14764803 14764949 -30142621 - L1MC4a LINE L1 -860 5286 5140 1741 119 103 0 chr21 14764949 14765202 -30142368 + AluSg SINE Alu 1 279 -31 625 280 72 84 chr21 14765202 14766606 -30140964 - L1MC4a LINE L1 -1006 5140 4001 225 0 0 0 chr21 14766606 14766631 -30140939 + (CA)n Simple_repeat Simple_repeat 2 26 0 625 280 72 84 chr21 14766631 14767126 -30140444 - L1MC4a LINE L1 -2145 4001 3502 367 282 71 61 chr21 14767295 14767575 -30139995 - L1MC4a LINE L1 -2812 3334 3052 223 241 13 63 chr21 14767646 14767725 -30139845 - MER5A DNA MER1_type -45 144 70 182 260 55 41 chr21 14770109 14770182 -30137388 - MIR SINE MIR -106 156 83 298 350 17 17 chr21 14771278 14771395 -30136175 - MIR SINE MIR -67 141 25 309 118 0 0 chr21 14771916 14771967 -30135603 + (T)n Simple_repeat Simple_repeat 1 51 0 222 118 0 0 chr21 14772101 14772135 -30135435 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 14774863 14774885 -30132685 + AT_rich Low_complexity Low_complexity 1 22 0 264 325 12 0 chr21 14775671 14775751 -30131819 + MIR3 SINE MIR 98 178 -30 247 206 0 22 chr21 14776383 14776475 -30131095 + (TA)n Simple_repeat Simple_repeat 2 91 0 190 295 116 45 chr21 14777130 14777242 -30130328 - L2 LINE L2 -10 3303 3184 2191 130 22 19 chr21 14777664 14778026 -30129544 - THE1B LTR MaLR -1 363 1 23 0 0 0 chr21 14778267 14778290 -30129280 + AT_rich Low_complexity Low_complexity 1 23 0 1713 169 158 11 chr21 14778827 14779200 -30128370 + MSTA LTR MaLR 1 428 0 197 328 0 0 chr21 14779484 14779545 -30128025 - L3b LINE CR1 -220 1363 1303 414 39 0 0 chr21 14780245 14780297 -30127273 + (CA)n Simple_repeat Simple_repeat 1 52 0 1975 157 19 32 chr21 14780700 14781069 -30126501 + THE1B LTR MaLR 1 364 0 11364 90 17 1 chr21 14781069 14782624 -30124946 + THE1B-int LTR MaLR 1 1580 0 2114 141 30 28 chr21 14782624 14782987 -30124583 + THE1B LTR MaLR 1 364 0 238 342 40 33 chr21 14783316 14783468 -30124102 - MER5A DNA MER1_type -21 168 16 209 108 27 0 chr21 14784142 14784179 -30123391 + (TATG)n Simple_repeat Simple_repeat 3 40 0 290 362 120 27 chr21 14784184 14784918 -30122652 + L2 LINE L2 1870 2671 -643 27 73 0 0 chr21 14785034 14785089 -30122481 + AT_rich Low_complexity Low_complexity 1 55 0 186 363 52 36 chr21 14785214 14785407 -30122163 + L2 LINE L2 2807 3002 -270 1721 172 3 34 chr21 14786282 14786602 -30120968 + AluJb SINE Alu 1 310 -2 241 390 83 50 chr21 14787407 14787684 -30119886 - L2 LINE L2 -19 3253 2968 330 272 162 47 chr21 14787853 14788044 -30119526 - L2 LINE L2 -106 3207 2995 246 315 45 36 chr21 14788587 14788698 -30118872 - L2 LINE L2 -1 3312 3201 39 60 0 0 chr21 14789978 14790045 -30117525 + AT_rich Low_complexity Low_complexity 1 67 0 315 251 45 36 chr21 14790429 14790575 -30116995 + MIR SINE MIR 6 151 -65 1591 142 31 3 chr21 14790703 14790991 -30116579 - L1MA3 LINE L1 0 6305 6010 760 203 0 0 chr21 14791041 14791169 -30116401 - FLAM_C SINE Alu -11 132 5 246 286 135 8 chr21 14791397 14791530 -30116040 + L2 LINE L2 3085 3234 -79 24 0 0 0 chr21 14791543 14791567 -30116003 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 14792500 14792521 -30115049 + AT_rich Low_complexity Low_complexity 1 21 0 1398 30 0 12 chr21 14793583 14793751 -30113819 - AluY SINE Alu -7 304 139 21 0 0 0 chr21 14794682 14794703 -30112867 + AT_rich Low_complexity Low_complexity 1 21 0 8943 145 24 20 chr21 14795046 14797770 -30109800 - L1MA1 LINE L1 -6 6296 3566 4000 105 30 49 chr21 14797770 14798466 -30109104 - L1PB1 LINE L1 0 6151 5469 255 239 28 0 chr21 14798466 14798537 -30109033 - L1 LINE L1 -1525 6040 5968 * 12490 202 14 12 chr21 14798518 14799587 -30107983 - L1P5 LINE L1 -672 5479 4414 702 35 0 0 chr21 14799587 14799672 -30107898 + (TTTTA)n Simple_repeat Simple_repeat 3 87 0 12490 202 14 12 chr21 14799672 14799691 -30107879 - L1P5 LINE L1 -1737 4414 4397 2256 71 4 0 chr21 14799691 14800008 -30107562 - AluY SINE Alu 0 318 1 12490 202 14 12 chr21 14800008 14801946 -30105624 - L1P5 LINE L1 -1754 4397 2444 238 69 86 0 chr21 14801967 14802025 -30105545 + (TA)n Simple_repeat Simple_repeat 1 63 0 482 209 6 49 chr21 14802031 14802194 -30105376 - L1 LINE L1 -3653 3912 3757 272 85 0 0 chr21 14802222 14802269 -30105301 + LTR66 LTR ERVL 393 439 -171 404 121 76 0 chr21 14802286 14802418 -30105152 + (TA)n Simple_repeat Simple_repeat 2 143 0 226 122 0 61 chr21 14802423 14802472 -30105098 + L1MC4 LINE L1 6658 6703 -1339 2853 123 94 6 chr21 14802491 14803167 -30104403 - L1PBa LINE L1 -3689 3876 3141 5556 142 38 8 chr21 14803181 14804114 -30103456 - L1PBa LINE L1 -5049 2516 1556 282 303 244 17 chr21 14804314 14804433 -30103137 + MIR3 SINE MIR 42 187 -21 22 0 0 0 chr21 14804586 14804608 -30102962 + AT_rich Low_complexity Low_complexity 1 22 0 1787 154 27 10 chr21 14804775 14805068 -30102502 - AluSx SINE Alu -10 302 5 2069 123 3 16 chr21 14806824 14807133 -30100437 - AluSg SINE Alu -5 305 1 285 320 51 27 chr21 14807515 14807771 -30099799 - L1ME4a LINE L1 -104 6017 5756 186 313 0 16 chr21 14808024 14808088 -30099482 + L2 LINE L2 2997 3059 -213 189 333 53 13 chr21 14808181 14808256 -30099314 + L2 LINE L2 3125 3202 -70 2130 121 0 3 chr21 14808326 14808623 -30098947 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr21 14809579 14809599 -30097971 + (CAA)n Simple_repeat Simple_repeat 2 21 0 311 133 0 17 chr21 14809912 14809972 -30097598 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1130 244 42 53 chr21 14809983 14810344 -30097226 + MLT1A2 LTR MaLR 3 359 -15 512 269 66 50 chr21 14810361 14810603 -30096967 - L1MC4 LINE L1 -285 7757 7512 191 323 0 0 chr21 14810636 14810698 -30096872 + L2 LINE L2 3248 3309 -4 607 284 93 4 chr21 14810939 14811196 -30096374 + MER5C DNA MER1_type 1 280 -44 194 190 0 35 chr21 14811374 14811432 -30096138 + (TATG)n Simple_repeat Simple_repeat 1 56 0 227 333 10 10 chr21 14811472 14811571 -30095999 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 196 118 59 0 chr21 14811613 14811647 -30095923 - L2 LINE L2 -956 2358 2323 2081 107 7 20 chr21 14811663 14811963 -30095607 + AluSg SINE Alu 1 296 -14 180 359 0 0 chr21 14813294 14813347 -30094223 - L2 LINE L2 -23 3290 3238 21 0 0 0 chr21 14814354 14814375 -30093195 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr21 14815359 14815401 -30092169 + AT_rich Low_complexity Low_complexity 1 42 0 2261 213 14 24 chr21 14815608 14816162 -30091408 - L1PB1 LINE L1 -762 5384 4836 * 5132 100 20 18 chr21 14816157 14816944 -30090626 + L1PB1 LINE L1 5361 6149 -2 183 100 0 0 chr21 14817328 14817358 -30090212 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 988 186 37 11 chr21 14818541 14818729 -30088841 - MSTD LTR MaLR 0 396 204 23 33 0 0 chr21 14820547 14820577 -30086993 + AT_rich Low_complexity Low_complexity 1 30 0 303 93 0 0 chr21 14820867 14820910 -30086660 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2176 112 0 7 chr21 14821140 14821444 -30086126 + AluSx SINE Alu 11 312 0 180 0 0 0 chr21 14823535 14823555 -30084015 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2091 147 0 0 chr21 14826025 14826331 -30081239 - AluSx SINE Alu -4 308 3 39 50 0 0 chr21 14826453 14826513 -30081057 + AT_rich Low_complexity Low_complexity 1 60 0 270 95 0 0 chr21 14827129 14827171 -30080399 + (TG)n Simple_repeat Simple_repeat 1 42 0 296 282 14 0 chr21 14827410 14827481 -30080089 + tRNA-Ile-ATT tRNA tRNA 1 72 -5 21 0 0 0 chr21 14828327 14828348 -30079222 + AT_rich Low_complexity Low_complexity 1 21 0 6761 62 10 0 chr21 14829152 14830035 -30077535 - L1PA6 LINE L1 0 6154 5263 1133 151 0 16 chr21 14830378 14830564 -30077006 - AluJb SINE Alu -45 267 85 193 282 71 24 chr21 14831065 14831150 -30076420 + MIR SINE MIR 116 204 -58 378 317 24 30 chr21 14831348 14831512 -30076058 - MIR SINE MIR -16 246 84 5467 181 38 29 chr21 14831709 14833952 -30073618 - L1PA16 LINE L1 0 6166 3916 207 167 0 0 chr21 14834878 14834920 -30072650 + (CATA)n Simple_repeat Simple_repeat 2 43 0 525 262 0 8 chr21 14834981 14835103 -30072467 - FLAM_A SINE Alu -12 121 1 234 222 30 40 chr21 14835944 14836043 -30071527 + A-rich Low_complexity Low_complexity 5 102 0 260 151 55 0 chr21 14836326 14836399 -30071171 + (TA)n Simple_repeat Simple_repeat 1 77 0 27 0 0 0 chr21 14836399 14836426 -30071144 + AT_rich Low_complexity Low_complexity 1 27 0 653 192 51 0 chr21 14836455 14836611 -30070959 - L1 LINE L1 -1710 4436 4273 22 36 0 55 chr21 14838152 14838207 -30069363 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 14838445 14838483 -30069087 + AT_rich Low_complexity Low_complexity 1 38 0 369 0 0 0 chr21 14838734 14838775 -30068795 + (TG)n Simple_repeat Simple_repeat 2 42 0 2398 67 0 0 chr21 14838775 14839061 -30068509 - AluY SINE Alu -22 289 1 544 28 99 0 chr21 14839206 14839277 -30068293 + L1PA10 LINE L1 5801 5878 -290 1848 136 0 0 chr21 14839541 14839806 -30067764 - AluSq SINE Alu -48 265 1 1206 251 74 3 chr21 14840246 14840557 -30067013 + MER58B DNA MER1_type 7 339 -2 3496 195 76 59 chr21 14840757 14841795 -30065775 - L1MD1 LINE L1 -5 6631 5577 1280 231 67 6 chr21 14841798 14842158 -30065412 - MER34B LTR ERV1 0 565 184 309 259 37 9 chr21 14842194 14842315 -30065255 - MER34 LTR ERV1 -429 137 1 727 238 31 1 chr21 14842315 14842537 -30065033 - L1MD1 LINE L1 -976 5564 5336 240 149 0 0 chr21 14842556 14842603 -30064967 + (TC)n Simple_repeat Simple_repeat 1 47 0 583 222 0 121 chr21 14842604 14842678 -30064892 - L1MD1 LINE L1 -1208 5332 5251 2156 96 0 4 chr21 14842678 14842959 -30064611 + AluSx SINE Alu 17 296 -16 583 222 0 121 chr21 14842959 14843091 -30064479 - L1MD1 LINE L1 -1289 5251 5151 25 51 0 0 chr21 14843113 14843152 -30064418 + AT_rich Low_complexity Low_complexity 1 39 0 889 279 59 3 chr21 14843187 14843545 -30064025 - L1MD1 LINE L1 -1406 5134 4757 * 1214 231 0 38 chr21 14843542 14843858 -30063712 - L1MD1 LINE L1 -2057 4483 4180 8775 101 26 8 chr21 14843860 14845052 -30062518 - HSMAR1 DNA Mariner -1 1286 70 2391 73 0 25 chr21 14845052 14845369 -30062201 - AluY SINE Alu -2 309 1 8775 101 26 8 chr21 14845369 14845410 -30062160 - HSMAR1 DNA Mariner -1217 70 31 9193 241 66 44 chr21 14845425 14845626 -30061944 - L1MD1 LINE L1 -2365 4175 3980 2294 108 0 0 chr21 14845626 14845933 -30061637 + AluSq SINE Alu 1 307 -6 9193 241 66 44 chr21 14845933 14846023 -30061547 - L1MD1 LINE L1 -2560 3980 3893 1784 172 0 23 chr21 14846023 14846331 -30061239 - AluJo SINE Alu -11 301 1 9193 241 66 44 chr21 14846331 14847275 -30060295 - L1MD1 LINE L1 -2647 3893 2972 2336 88 7 0 chr21 14847275 14847583 -30059987 + AluSg SINE Alu 1 310 0 9193 241 66 44 chr21 14847583 14850400 -30057170 - L1MD1 LINE L1 -3568 2972 3 362 227 23 11 chr21 14850696 14850784 -30056786 + L2 LINE L2 3225 3313 0 256 250 0 0 chr21 14852784 14852864 -30054706 + T-rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chr21 14853287 14853314 -30054256 + (A)n Simple_repeat Simple_repeat 1 27 0 218 104 0 42 chr21 14853328 14853376 -30054194 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 426 274 131 11 chr21 14858143 14858318 -30049252 + L2 LINE L2 3118 3313 0 24 53 0 0 chr21 14858828 14858866 -30048704 + AT_rich Low_complexity Low_complexity 1 38 0 2073 126 3 3 chr21 14859909 14860210 -30047360 + AluSx SINE Alu 3 303 -9 219 139 0 0 chr21 14860797 14860833 -30046737 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 4740 6 0 0 chr21 14862217 14862751 -30044819 - L1HS LINE L1 0 6155 5622 296 298 83 0 chr21 14863082 14863203 -30044367 - MIR3 SINE MIR -28 180 50 2048 115 10 0 chr21 14863874 14864169 -30043401 + AluSx SINE Alu 8 305 -7 898 209 17 0 chr21 14865650 14865827 -30041743 + MER3 DNA MER1_type 30 209 0 207 224 17 17 chr21 14865976 14866034 -30041536 + T-rich Low_complexity Low_complexity 2 59 0 2126 113 0 0 chr21 14866313 14866621 -30040949 - AluSg SINE Alu 0 308 1 32 43 0 0 chr21 14866879 14866925 -30040645 + AT_rich Low_complexity Low_complexity 1 46 0 703 227 78 0 chr21 14867079 14867233 -30040337 + FRAM SINE Alu 1 165 -11 22 56 0 0 chr21 14867418 14867454 -30040116 + AT_rich Low_complexity Low_complexity 1 36 0 2112 163 52 45 chr21 14867481 14867696 -30039874 - Tigger2 DNA MER2_type 0 2718 2506 2193 96 3 26 chr21 14867696 14867999 -30039571 + AluSp SINE Alu 1 296 -17 2112 163 52 45 chr21 14867999 14868225 -30039345 - Tigger2 DNA MER2_type -212 2506 2274 424 188 0 0 chr21 14868216 14868285 -30039285 - Tigger2 DNA MER2_type -2649 69 1 * 304 321 100 38 chr21 14869368 14869608 -30037962 + MIR SINE MIR 7 261 -1 207 0 0 0 chr21 14869721 14869744 -30037826 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 204 264 132 0 chr21 14869990 14870043 -30037527 + MIR SINE MIR 94 153 -109 21 36 0 0 chr21 14870401 14870429 -30037141 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 14870580 14870601 -30036969 + AT_rich Low_complexity Low_complexity 1 21 0 2248 103 3 0 chr21 14871077 14871377 -30036193 - AluSx SINE Alu -11 301 1 519 216 132 12 chr21 14871626 14871793 -30035777 + MER53 DNA DNA 1 187 -2 31 26 0 0 chr21 14871914 14871952 -30035618 + AT_rich Low_complexity Low_complexity 1 38 0 2303 93 0 3 chr21 14872876 14873188 -30034382 + AluSq SINE Alu 1 311 -2 1487 74 15 0 chr21 14873756 14873958 -30033612 - AluY SINE Alu -10 301 97 218 330 99 73 chr21 14874408 14874531 -30033039 + MIR SINE MIR 23 141 -121 2648 39 0 0 chr21 14874531 14874841 -30032729 + AluY SINE Alu 2 311 0 218 330 99 73 chr21 14874841 14874950 -30032620 + MIR SINE MIR 141 261 -1 214 379 23 0 chr21 14875180 14875267 -30032303 - MIR3 SINE MIR -7 201 113 246 62 0 0 chr21 14875713 14875745 -30031825 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 1984 161 0 0 chr21 14876093 14876397 -30031173 + AluSx SINE Alu 5 308 -4 293 138 155 0 chr21 14876402 14876460 -30031110 + MIR3 SINE MIR 114 180 -28 1071 189 0 11 chr21 14876467 14876657 -30030913 + AluSg/x SINE Alu 112 299 -13 438 328 159 0 chr21 14876957 14877152 -30030418 + MIR SINE MIR 31 256 -6 294 326 41 20 chr21 14878876 14878974 -30028596 - MIR SINE MIR -150 112 13 208 301 204 0 chr21 14880037 14880150 -30027420 - MIR3 SINE MIR -63 145 10 * 409 314 115 13 chr21 14880137 14880293 -30027277 - L2 LINE L2 0 3272 3101 2047 96 58 0 chr21 14881213 14881504 -30026066 - AluSx SINE Alu -4 308 1 1978 113 7 0 chr21 14881939 14882245 -30025325 + AluSq SINE Alu 2 309 0 778 167 0 8 chr21 14883296 14883428 -30024142 + FLAM_C SINE Alu 1 131 -2 24 32 0 0 chr21 14883967 14883998 -30023572 + AT_rich Low_complexity Low_complexity 1 31 0 815 107 21 43 chr21 14888618 14888758 -30018812 + L1MA3 LINE L1 6169 6305 0 295 369 92 0 chr21 14889614 14889744 -30017826 - MIR3 SINE MIR -65 143 2 2100 100 0 0 chr21 14890552 14890833 -30016737 - AluY SINE Alu -30 281 1 280 334 93 29 chr21 14891169 14891318 -30016252 + MIR SINE MIR 10 163 -65 24 0 0 0 chr21 14892563 14892587 -30014983 + AT_rich Low_complexity Low_complexity 1 24 0 207 69 0 0 chr21 14892740 14892769 -30014801 + (TC)n Simple_repeat Simple_repeat 2 30 0 288 70 0 0 chr21 14892789 14892832 -30014738 + (CA)n Simple_repeat Simple_repeat 1 43 0 1979 86 6 60 chr21 14893083 14893434 -30014136 + AluSg SINE Alu 1 310 0 1984 94 43 0 chr21 14893454 14893730 -30013840 + AluSc SINE Alu 1 288 -21 22 56 0 0 chr21 14893915 14893951 -30013619 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 14894423 14894461 -30013109 + AT_rich Low_complexity Low_complexity 1 38 0 324 165 76 0 chr21 14895144 14895302 -30012268 + (TA)n Simple_repeat Simple_repeat 1 170 0 246 182 78 0 chr21 14895331 14895485 -30012085 + (TA)n Simple_repeat Simple_repeat 1 166 0 21 0 0 0 chr21 14899352 14899373 -30008197 + AT_rich Low_complexity Low_complexity 1 21 0 2180 122 3 0 chr21 14900048 14900351 -30007219 - AluSx SINE Alu -8 304 1 589 337 16 5 chr21 14900554 14900744 -30006826 - MIR3 SINE MIR -12 196 5 1993 124 37 0 chr21 14901047 14901346 -30006224 - AluSx SINE Alu -2 310 1 330 45 0 0 chr21 14902145 14902189 -30005381 + (CA)n Simple_repeat Simple_repeat 2 45 0 2118 111 3 3 chr21 14902242 14902548 -30005022 + AluSg SINE Alu 1 306 -4 213 65 0 0 chr21 14902626 14902657 -30004913 + (A)n Simple_repeat Simple_repeat 1 31 0 644 237 98 21 chr21 14903146 14903340 -30004230 + MER3 DNA MER1_type 1 209 0 274 283 20 10 chr21 14904697 14904796 -30002774 + CT-rich Low_complexity Low_complexity 1 100 0 31 44 0 0 chr21 14905544 14905589 -30001981 + AT_rich Low_complexity Low_complexity 1 45 0 2484 25 0 0 chr21 14913548 14913830 -29993740 + AluY SINE Alu 28 309 -2 393 267 7 82 chr21 14913927 14914062 -29993508 + MLT1K LTR MaLR 273 397 -191 430 260 60 100 chr21 14914188 14914457 -29993113 - MLT1K LTR MaLR -162 426 169 185 94 31 0 chr21 14915086 14915118 -29992452 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 1848 89 4 0 chr21 14916994 14917242 -29990328 + AluSp SINE Alu 65 313 0 2132 99 13 0 chr21 14917444 14917748 -29989822 - AluY SINE Alu -3 308 1 288 326 70 41 chr21 14917752 14917924 -29989646 - L2 LINE L2 -194 3078 2902 274 239 97 69 chr21 14918176 14918316 -29989254 - MER5A DNA MER1_type -26 163 7 372 298 123 35 chr21 14918972 14919200 -29988370 - MLT1J LTR MaLR -255 256 9 21 36 0 0 chr21 14919611 14919639 -29987931 + AT_rich Low_complexity Low_complexity 1 28 0 228 359 8 8 chr21 14920011 14920128 -29987442 - L2 LINE L2 -713 2601 2485 2003 101 26 0 chr21 14921213 14921481 -29986089 + AluSx SINE Alu 1 275 -37 237 132 0 0 chr21 14924722 14924760 -29982810 + (TG)n Simple_repeat Simple_repeat 1 38 0 207 259 62 12 chr21 14925010 14925091 -29982479 + L2 LINE L2 3188 3272 0 739 272 185 38 chr21 14925221 14925879 -29981691 + L2 LINE L2 2576 3313 0 1114 201 5 19 chr21 14926178 14926392 -29981178 - MER58A DNA MER1_type -13 211 1 563 197 230 0 chr21 14926677 14926842 -29980728 + MER63 DNA MER1_type 1 1688 0 565 179 0 128 chr21 14928113 14928308 -29979262 - L1MC5 LINE L1 -19 7942 7773 499 251 108 35 chr21 14928306 14928565 -29979005 - L1MC5 LINE L1 -426 7535 7258 * 200 111 28 0 chr21 14928566 14928602 -29978968 + A-rich Low_complexity Low_complexity 3 39 0 1917 143 4 0 chr21 14930082 14930396 -29977174 + AluSx SINE Alu 3 317 0 2691 172 27 19 chr21 14930522 14931085 -29976485 - L1MB1 LINE L1 -1 6167 5601 857 139 14 0 chr21 14931085 14931220 -29976350 - L1PB3 LINE L1 -2 6152 6007 21 0 0 0 chr21 14931222 14931243 -29976327 + AT_rich Low_complexity Low_complexity 1 21 0 1973 106 3 46 chr21 14931246 14931549 -29976021 - AluSq SINE Alu -23 290 1 1775 186 25 0 chr21 14931549 14931910 -29975660 - L1MB1 LINE L1 -727 5607 5238 2862 14 0 0 chr21 14932137 14932483 -29975087 - L1PA3 LINE L1 -831 5315 4970 7065 29 0 0 chr21 14932483 14933311 -29974259 + L1PA3 LINE L1 5319 6152 -3 980 61 0 0 chr21 14934097 14934212 -29973358 - AluY SINE Alu -175 136 22 1266 114 6 0 chr21 14934232 14934408 -29973162 - AluSg/x SINE Alu -10 302 126 2444 69 0 0 chr21 14934408 14934713 -29972857 - AluY SINE Alu -6 305 1 423 297 77 54 chr21 14934713 14934935 -29972635 - L3 LINE CR1 -3 1574 1348 650 284 112 41 chr21 14935181 14935431 -29972139 - MER77 LTR ERV1 -12 593 354 1578 195 89 22 chr21 14935431 14935800 -29971770 - MSTD LTR MaLR -2 394 1 650 284 112 41 chr21 14935800 14935885 -29971685 - MER77 LTR ERV1 -251 354 277 354 333 142 0 chr21 14936260 14936464 -29971106 + MIR SINE MIR 30 262 0 209 265 137 49 chr21 14936571 14936673 -29970897 - L2 LINE L2 0 3272 3162 1114 247 77 50 chr21 14937238 14937695 -29969875 - L2 LINE L2 -4 3309 2841 2159 41 0 11 chr21 14937734 14938001 -29969569 - AluY SINE Alu -15 296 33 445 206 32 13 chr21 14938056 14938223 -29969347 + MER33 DNA MER1_type 1 214 -110 3249 186 63 27 chr21 14938237 14939013 -29968557 - L1MD2 LINE L1 0 6359 5556 288 140 0 18 chr21 14939013 14939070 -29968500 + MER33 DNA MER1_type 234 289 -35 703 287 25 5 chr21 14939264 14939466 -29968104 + MIR SINE MIR 1 206 -56 2508 111 5 19 chr21 14939574 14939943 -29967627 - THE1B LTR MaLR 0 364 1 353 309 16 8 chr21 14939944 14940067 -29967503 + L2 LINE L2 3165 3288 -25 216 0 0 0 chr21 14940075 14940099 -29967471 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 342 67 0 0 chr21 14940689 14940734 -29966836 + (CA)n Simple_repeat Simple_repeat 2 46 0 623 310 65 4 chr21 14941366 14941598 -29965972 - MIR SINE MIR -8 254 9 25 51 0 0 chr21 14942033 14942072 -29965498 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr21 14943085 14943108 -29964462 + AT_rich Low_complexity Low_complexity 1 23 0 762 225 39 0 chr21 14943824 14944006 -29963564 - MER5A DNA MER1_type 0 189 1 844 164 0 0 chr21 14944119 14944247 -29963323 - FLAM_C SINE Alu -4 129 2 2152 120 0 0 chr21 14944346 14944647 -29962923 + AluSg SINE Alu 1 301 -9 2387 80 0 0 chr21 14945117 14945418 -29962152 - AluSg SINE Alu -9 301 1 586 275 6 34 chr21 14945520 14945698 -29961872 - MER5B DNA MER1_type -5 173 1 2054 117 17 0 chr21 14945784 14946083 -29961487 + AluSp SINE Alu 1 304 -9 199 258 15 30 chr21 14946307 14946373 -29961197 - L2 LINE L2 -16 3256 3192 21 0 0 0 chr21 14946700 14946721 -29960849 + AT_rich Low_complexity Low_complexity 1 21 0 2715 70 120 0 chr21 14948884 14949284 -29958286 + LTR7 LTR ERV1 1 448 -2 424 331 49 49 chr21 14949391 14949636 -29957934 - MIR SINE MIR -17 245 1 354 287 119 105 chr21 14950112 14950637 -29956933 - L2 LINE L2 -10 3303 2767 22 0 0 0 chr21 14952047 14952069 -29955501 + AT_rich Low_complexity Low_complexity 1 22 0 1365 227 64 6 chr21 14952877 14953221 -29954349 + MLT1A1 LTR MaLR 1 364 -1 522 292 26 31 chr21 14953530 14953722 -29953848 + MLT1K LTR MaLR 69 259 -329 268 348 79 51 chr21 14953711 14953889 -29953681 + MLT1K LTR MaLR 404 586 -2 * 185 232 116 14 chr21 14953921 14953990 -29953580 + L2 LINE L2 2714 2789 -525 887 195 53 0 chr21 14954365 14954534 -29953036 + MER5A DNA MER1_type 1 178 -11 439 279 85 8 chr21 14955102 14955231 -29952339 + MIR SINE MIR 12 150 -112 260 348 80 9 chr21 14956018 14956130 -29951440 - L2 LINE L2 -21 3292 3173 189 274 105 32 chr21 14956117 14956212 -29951358 + L2 LINE L2 3192 3293 -20 * 2372 66 3 0 chr21 14956263 14956565 -29951005 + AluY SINE Alu 1 303 -8 1930 187 83 30 chr21 14956724 14957184 -29950386 + LTR2B LTR ERV1 7 490 0 24 0 0 0 chr21 14957994 14958018 -29949552 + AT_rich Low_complexity Low_complexity 1 24 0 291 349 75 52 chr21 14958103 14958355 -29949215 + L2 LINE L2 3015 3272 0 267 31 0 0 chr21 14958615 14958647 -29948923 + (TG)n Simple_repeat Simple_repeat 2 33 0 2227 106 0 0 chr21 14958755 14959056 -29948514 - AluSx SINE Alu -11 301 1 2225 118 0 29 chr21 14959253 14959600 -29947970 - MER1B DNA MER1_type 0 337 1 269 308 106 35 chr21 14959623 14959821 -29947749 + MLT1J LTR MaLR 265 476 -35 21 36 0 0 chr21 14960150 14960178 -29947392 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr21 14960339 14960381 -29947189 + AT_rich Low_complexity Low_complexity 1 42 0 251 259 0 0 chr21 14960914 14960972 -29946598 + (TG)n Simple_repeat Simple_repeat 2 59 0 1137 256 6 31 chr21 14961264 14961588 -29945982 - L1ME2 LINE L1 -9 6224 5909 2050 288 54 10 chr21 14961589 14962180 -29945390 + MLT1E3 LTR MaLR 1 617 -7 4899 246 79 34 chr21 14962183 14962223 -29945347 - L1ME2 LINE L1 -320 5913 5876 1547 267 118 20 chr21 14962223 14962763 -29944807 - MLT1E LTR MaLR 0 593 1 4899 246 79 34 chr21 14962763 14965176 -29942394 - L1ME2 LINE L1 -357 5876 3347 1373 286 62 55 chr21 14965204 14966229 -29941341 - L1ME2 LINE L1 -5007 1389 357 350 239 37 9 chr21 14968632 14968741 -29938829 - MER58B DNA MER1_type -8 333 222 894 184 8 115 chr21 14969180 14969424 -29938146 + MER20 DNA MER1_type 1 218 -1 1909 194 160 6 chr21 14970339 14970813 -29936757 - L1MC3 LINE L1 -4 7781 7235 27 29 0 0 chr21 14970838 14970872 -29936698 + AT_rich Low_complexity Low_complexity 1 34 0 2439 72 3 0 chr21 14971464 14971771 -29935799 + AluSc SINE Alu 2 309 0 22 0 0 0 chr21 14971970 14971992 -29935578 + AT_rich Low_complexity Low_complexity 1 22 0 241 264 14 14 chr21 14972236 14972308 -29935262 + L1MEd LINE L1 12 83 -6036 328 319 109 77 chr21 14972648 14972911 -29934659 + L1MEd LINE L1 441 725 -5394 5331 73 1 6 chr21 14972911 14973620 -29933950 + L1PA8 LINE L1 5467 6172 0 328 319 109 77 chr21 14973620 14973786 -29933784 + L1MEd LINE L1 725 884 -5235 281 298 97 68 chr21 14974457 14975074 -29932496 + L1ME3 LINE L1 467 1101 -5018 4317 93 37 2 chr21 14975500 14976124 -29931446 + L1PA13 LINE L1 5509 6154 -9 423 0 0 0 chr21 14976124 14976171 -29931399 + (CA)n Simple_repeat Simple_repeat 2 48 0 628 270 22 39 chr21 14976280 14976510 -29931060 - L2 LINE L2 -1 3312 3087 201 224 0 75 chr21 14976662 14976729 -29930841 - MIR SINE MIR -12 250 189 936 280 118 53 chr21 14976780 14977740 -29929830 + L1ME3 LINE L1 4364 5385 -744 1695 291 29 13 chr21 14977785 14978152 -29929418 + L1ME3 LINE L1 5472 5855 -290 1924 106 7 3 chr21 14978152 14978472 -29929098 + AluSg SINE Alu 1 321 0 1695 291 29 13 chr21 14978472 14978715 -29928855 + L1ME3 LINE L1 5855 6093 -52 819 253 60 29 chr21 14978790 14978948 -29928622 + L1MC5 LINE L1 7533 7685 -276 2327 63 0 66 chr21 14978948 14979298 -29928272 - L1PA7 LINE L1 -7 6147 5821 819 253 60 29 chr21 14979298 14979522 -29928048 + L1MC5 LINE L1 7685 7927 -34 1670 135 15 0 chr21 14979541 14979801 -29927769 + L1PA16 LINE L1 5894 6157 -9 398 317 98 31 chr21 14979871 14980517 -29927053 + L1ME LINE L1 1013 1701 -4695 31 44 0 0 chr21 14980901 14980946 -29926624 + AT_rich Low_complexity Low_complexity 1 45 0 757 284 157 31 chr21 14980946 14981853 -29925717 + L1ME LINE L1 2197 3217 -2998 530 239 35 44 chr21 14982020 14982338 -29925232 + L1ME LINE L1 3175 3489 -2726 7266 50 3 0 chr21 14982383 14983280 -29924290 - L1PA6 LINE L1 -1 6153 5254 314 293 0 0 chr21 14983289 14983388 -29924182 + L1ME LINE L1 3545 3643 -2572 * 486 261 30 2 chr21 14983377 14983525 -29924045 + L1ME LINE L1 5530 5676 -514 21 0 0 0 chr21 14984071 14984092 -29923478 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 14984756 14984784 -29922786 + AT_rich Low_complexity Low_complexity 1 28 0 2427 59 0 0 chr21 14985662 14985967 -29921603 + AluY SINE Alu 1 305 -6 526 246 8 45 chr21 14986154 14986288 -29921282 - L2 LINE L2 -8 3305 3177 258 277 244 0 chr21 14986360 14986479 -29921091 - L2 LINE L2 -458 2856 2709 24 0 0 0 chr21 14986860 14986884 -29920686 + AT_rich Low_complexity Low_complexity 1 24 0 3419 227 116 17 chr21 14986980 14988069 -29919501 + L1MC3 LINE L1 6583 7778 -7 373 224 0 0 chr21 14990684 14990751 -29916819 + MER69 DNA AcHobo 5 71 -2455 437 271 7 14 chr21 14990754 14990898 -29916672 + MER69 DNA AcHobo 2384 2526 0 225 0 0 0 chr21 14990935 14990960 -29916610 + (CA)n Simple_repeat Simple_repeat 2 26 0 251 279 42 24 chr21 14991129 14991294 -29916276 + L1M4 LINE L1 2210 2377 -3769 1990 174 14 11 chr21 14991324 14991675 -29915895 - MLT1A1 LTR MaLR 0 365 14 655 307 132 30 chr21 14992025 14992488 -29915082 + L1MEd LINE L1 166 675 -5444 303 269 58 19 chr21 14993994 14994098 -29913472 + LTR67 LTR ERVL 450 557 0 554 222 21 109 chr21 14994672 14994911 -29912659 - MER20 DNA MER1_type 0 219 2 519 249 10 129 chr21 14994926 14995119 -29912451 - MIR SINE MIR -71 191 22 23 33 0 0 chr21 14997497 14997527 -29910043 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr21 14997566 14997621 -29909949 + AT_rich Low_complexity Low_complexity 1 55 0 1813 242 88 22 chr21 14998278 14998438 -29909132 - MLT1E3 LTR MaLR 0 624 476 2523 111 8 3 chr21 14998438 14998800 -29908770 + THE1B LTR MaLR 1 364 0 1813 242 88 22 chr21 14998800 14999253 -29908317 - MLT1E3 LTR MaLR -148 476 1 1606 135 60 83 chr21 15000009 15000393 -29907177 - THE1C LTR MaLR 0 375 1 225 0 0 0 chr21 15000497 15000522 -29907048 + (TA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr21 15000737 15000766 -29906804 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr21 15001065 15001100 -29906470 + (TC)n Simple_repeat Simple_repeat 1 35 0 433 253 39 66 chr21 15002003 15002185 -29905385 + MER5B DNA MER1_type 1 177 -1 481 304 58 23 chr21 15002193 15002364 -29905206 + MER5B DNA MER1_type 2 178 0 407 274 65 30 chr21 15004207 15004375 -29903195 + MIR SINE MIR 62 235 -27 21 57 0 0 chr21 15004464 15004499 -29903071 + AT_rich Low_complexity Low_complexity 1 35 0 1667 181 4 0 chr21 15005194 15005498 -29902072 + AluSx SINE Alu 1 305 0 2443 59 0 0 chr21 15005586 15005891 -29901679 - AluY SINE Alu 0 311 7 1557 178 105 11 chr21 15005930 15006312 -29901258 + L1MC3 LINE L1 7368 7785 0 925 210 26 0 chr21 15006608 15006803 -29900767 + MER3 DNA MER1_type 1 200 -9 2498 46 3 3 chr21 15007320 15007624 -29899946 + AluY SINE Alu 1 304 -7 2450 315 102 44 chr21 15007882 15009373 -29898197 + L2 LINE L2 88 1665 -1649 422 257 40 20 chr21 15009409 15009557 -29898013 + L2 LINE L2 2983 3133 -180 1584 149 68 49 chr21 15011822 15012190 -29895380 - THE1C LTR MaLR 0 375 1 9140 142 15 38 chr21 15012190 15013804 -29893766 - THE1C-int LTR MaLR 0 1580 4 1635 169 60 35 chr21 15013807 15014173 -29893397 - THE1C LTR MaLR 0 375 1 2061 123 0 0 chr21 15014802 15015114 -29892456 + AluSx SINE Alu 1 312 0 2643 260 61 20 chr21 15016833 15018587 -29888983 - L1ME1 LINE L1 -4 6231 4337 232 284 63 8 chr21 15018589 15018716 -29888854 - L1ME1 LINE L1 -4881 1334 1201 23 54 0 0 chr21 15018753 15018790 -29888780 + AT_rich Low_complexity Low_complexity 1 37 0 1331 300 63 46 chr21 15018810 15019365 -29888205 - L1ME1 LINE L1 -4984 1221 677 2386 74 0 3 chr21 15019365 15019677 -29887893 - AluY SINE Alu 0 311 1 1331 300 63 46 chr21 15019677 15020245 -29887325 - L1ME1 LINE L1 -5528 677 107 1294 247 16 10 chr21 15020842 15021225 -29886345 + L1ME LINE L1 5440 5774 -392 4323 43 2 2 chr21 15021229 15021764 -29885806 - L1PA5 LINE L1 -4 6150 5616 24 32 0 0 chr21 15022361 15022392 -29885178 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr21 15023297 15023330 -29884240 + AT_rich Low_complexity Low_complexity 1 33 0 2176 105 0 10 chr21 15024340 15024634 -29882936 - AluSx SINE Alu -21 291 1 239 370 49 31 chr21 15024702 15024864 -29882706 - MIR3 SINE MIR -34 174 10 1748 122 4 19 chr21 15026895 15027158 -29880412 - THE1B LTR MaLR -105 259 1 1936 106 4 8 chr21 15027328 15027592 -29879978 + AluSq SINE Alu 36 298 -15 517 105 12 0 chr21 15027612 15027698 -29879872 + L1PA13 LINE L1 6076 6162 -1 23 0 0 0 chr21 15027718 15027741 -29879829 + AT_rich Low_complexity Low_complexity 1 23 0 1770 197 27 49 chr21 15028993 15029182 -29878388 - Charlie4a DNA MER1_type -1457 504 312 1673 185 23 3 chr21 15029182 15029484 -29878086 - AluJb SINE Alu -4 308 1 1770 197 27 49 chr21 15029484 15029807 -29877763 - Charlie4a DNA MER1_type -1649 312 3 2745 87 42 10 chr21 15030052 15030456 -29877114 - L1PA8 LINE L1 0 6172 5756 1901 73 4 0 chr21 15030457 15030704 -29876866 + L1PA8 LINE L1 5520 5767 -405 21 36 0 0 chr21 15032045 15032073 -29875497 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr21 15032080 15032101 -29875469 + (TA)n Simple_repeat Simple_repeat 1 21 0 344 239 0 0 chr21 15032186 15032257 -29875313 - MLT1L LTR MaLR -381 234 164 472 283 17 0 chr21 15032704 15032824 -29874746 + L2 LINE L2 3192 3313 0 4556 195 26 1 chr21 15034351 15035325 -29872245 - L1 LINE L1 -1344 4802 3805 * 4955 129 20 12 chr21 15035297 15036106 -29871464 + L1PA16 LINE L1 5336 6150 -16 41 48 0 0 chr21 15036107 15036169 -29871401 + AT_rich Low_complexity Low_complexity 1 62 0 257 284 0 55 chr21 15036231 15036340 -29871230 + L1ME4a LINE L1 5584 5686 -435 983 151 6 6 chr21 15036831 15036990 -29870580 + U1 snRNA snRNA 7 165 0 303 257 67 66 chr21 15037108 15037464 -29870106 + L1ME4a LINE L1 5725 6117 -4 6135 57 5 1 chr21 15038319 15039104 -29868466 + L1PA7 LINE L1 5367 6154 0 216 354 57 57 chr21 15039398 15039607 -29867963 - L2 LINE L2 0 3313 3105 * 632 302 4 86 chr21 15039605 15039873 -29867697 + MIR SINE MIR 12 257 -5 212 304 29 80 chr21 15041964 15042102 -29865468 + L2 LINE L2 2302 2432 -882 201 294 22 0 chr21 15042172 15042264 -29865306 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 184 338 103 15 chr21 15042721 15042857 -29864713 + L2 LINE L2 3149 3296 -17 545 271 46 7 chr21 15042973 15043124 -29864446 - MIR SINE MIR -24 238 82 224 328 0 0 chr21 15043711 15043769 -29863801 - MIR SINE MIR -179 83 26 980 236 71 52 chr21 15043772 15044599 -29862971 + Zaphod DNA AcHobo 1 989 -3042 1096 241 121 3 chr21 15044605 15044986 -29862584 + Zaphod DNA AcHobo 3601 4026 -5 2780 13 0 0 chr21 15045998 15046309 -29861261 + AluYa5 SINE Alu 1 311 0 26 0 0 0 chr21 15046658 15046684 -29860886 + AT_rich Low_complexity Low_complexity 1 26 0 2344 65 3 10 chr21 15047880 15048189 -29859381 - AluY SINE Alu -4 307 1 306 0 0 0 chr21 15048196 15048230 -29859340 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5596 32 0 0 chr21 15048230 15048892 -29858678 - L1PA4 LINE L1 -18 6137 5476 9452 29 2 1 chr21 15048903 15050798 -29856772 - L1PA4 LINE L1 0 6155 4259 1857 19 0 0 chr21 15050798 15051010 -29856560 + L1PA4 LINE L1 5940 6154 -1 21222 99 19 4 chr21 15051027 15054953 -29852617 + L1PA7 LINE L1 2175 6154 0 251 71 24 0 chr21 15055508 15055550 -29852020 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 299 295 108 14 chr21 15056431 15056570 -29851000 + MIR SINE MIR 94 245 -17 256 313 82 30 chr21 15056600 15056734 -29850836 + MIR SINE MIR 8 148 -114 1602 197 44 19 chr21 15057316 15057681 -29849889 + MLT1A2 LTR MaLR 1 374 0 607 230 99 6 chr21 15058287 15058448 -29849122 - MER45A DNA AcHobo -1 177 2 440 275 161 0 chr21 15060683 15060832 -29846738 - MIR SINE MIR 0 262 90 254 73 24 0 chr21 15061132 15061173 -29846397 + (TC)n Simple_repeat Simple_repeat 1 42 0 198 360 52 15 chr21 15061570 15061706 -29845864 + L3b LINE CR1 1283 1423 -160 243 348 18 18 chr21 15061747 15061859 -29845711 + L3 LINE CR1 1310 1421 -156 555 248 20 0 chr21 15062315 15062468 -29845102 + L1MA10 LINE L1 6176 6331 -3 201 94 0 0 chr21 15063745 15063777 -29843793 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 303 122 0 0 chr21 15065132 15065181 -29842389 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 267 253 0 11 chr21 15065181 15065272 -29842298 - L1MC4 LINE L1 -1339 6703 6614 236 205 90 0 chr21 15065203 15065281 -29842289 + L1MC4 LINE L1 6616 6700 -1342 * 212 139 0 23 chr21 15065282 15065325 -29842245 + (TA)n Simple_repeat Simple_repeat 1 42 0 336 237 0 32 chr21 15065333 15065426 -29842144 + L1MC4 LINE L1 6614 6703 -1339 324 247 0 32 chr21 15065347 15065440 -29842130 - L1MC4 LINE L1 -1339 6703 6614 * 238 244 0 0 chr21 15065448 15065534 -29842036 - L1MC4 LINE L1 -1341 6701 6616 1832 183 41 68 chr21 15065754 15066192 -29841378 + MSTB LTR MaLR 1 426 0 2073 70 7 0 chr21 15066798 15067069 -29840501 - AluY SINE Alu 0 311 39 27 49 0 0 chr21 15067652 15067693 -29839877 + AT_rich Low_complexity Low_complexity 1 41 0 361 299 38 13 chr21 15068896 15069053 -29838517 - MIR SINE MIR -71 191 31 180 0 0 0 chr21 15069387 15069407 -29838163 + (T)n Simple_repeat Simple_repeat 1 20 0 1750 288 47 4 chr21 15071249 15071777 -29835793 - MLT1H1 LTR MaLR -2 553 3 686 231 90 41 chr21 15071897 15072286 -29835284 + L1MC5 LINE L1 7524 7931 -30 358 323 24 127 chr21 15072546 15072924 -29834646 - L2 LINE L2 0 3272 2934 521 42 28 0 chr21 15073071 15073142 -29834428 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 193 313 0 16 chr21 15073166 15073230 -29834340 - L2 LINE L2 -773 2541 2479 589 263 66 70 chr21 15073315 15073356 -29834214 - MIR SINE MIR -32 230 190 2044 115 7 0 chr21 15073356 15073635 -29833935 + AluSq SINE Alu 1 281 -32 212 0 0 35 chr21 15073636 15073665 -29833905 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 589 263 66 70 chr21 15073665 15073849 -29833721 - MIR SINE MIR -71 191 4 382 187 81 65 chr21 15073858 15073981 -29833589 + MLT1J2 LTR MaLR 48 172 -278 267 305 36 42 chr21 15074247 15074414 -29833156 - L2 LINE L2 -865 2449 2284 21542 32 0 0 chr21 15074705 15078083 -29829487 + L1PA4 LINE L1 2769 6153 -2 1480 244 70 70 chr21 15078163 15078705 -29828865 - MLT1F1 LTR MaLR 0 567 1 9396 155 22 17 chr21 15078725 15078746 -29828824 + L1MA3 LINE L1 3431 3450 -2855 1615 204 0 32 chr21 15078746 15079060 -29828510 + AluJb SINE Alu 3 306 -6 9396 155 22 17 chr21 15079060 15081906 -29825664 + L1MA3 LINE L1 3450 6305 0 180 0 0 0 chr21 15082219 15082239 -29825331 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 257 75 25 0 chr21 15082238 15082278 -29825292 + (TA)n Simple_repeat Simple_repeat 1 41 0 2057 107 0 0 chr21 15082354 15082670 -29824900 - AluY SINE Alu 0 316 1 257 274 0 105 chr21 15083730 15083825 -29823745 - L2 LINE L2 0 3272 3188 1454 175 24 3 chr21 15085039 15085330 -29822240 + L1MB3 LINE L1 5887 6183 0 542 285 26 55 chr21 15085452 15085761 -29821809 + HAL1b LINE L1 368 667 -681 332 329 84 12 chr21 15085783 15085950 -29821620 + HAL1b LINE L1 733 911 -437 604 287 24 6 chr21 15086543 15086707 -29820863 + MIR3 SINE MIR 41 207 -1 1762 135 7 31 chr21 15086964 15087290 -29820280 - AluSx SINE Alu 0 319 1 23 54 0 0 chr21 15089212 15089249 -29818321 + AT_rich Low_complexity Low_complexity 1 37 0 1041 126 0 106 chr21 15089814 15090012 -29817558 + AluY SINE Alu 5 181 -130 236 189 0 0 chr21 15090033 15090086 -29817484 + A-rich Low_complexity Low_complexity 1 53 0 301 359 112 46 chr21 15090610 15091067 -29816503 + L2 LINE L2 2811 3297 -16 477 333 71 18 chr21 15093806 15094031 -29813539 - MIR SINE MIR -12 250 14 1073 221 169 24 chr21 15096907 15097369 -29810201 + L1MC4a LINE L1 6747 7275 -533 2473 181 53 10 chr21 15097380 15097887 -29809683 + MER34 LTR ERV1 11 539 -3 369 234 31 55 chr21 15097889 15098017 -29809553 + L1MC4 LINE L1 7352 7476 -566 1883 166 0 16 chr21 15098285 15098599 -29808971 + AluJo SINE Alu 1 309 -3 1220 128 0 0 chr21 15099363 15099535 -29808035 + L1PA7 LINE L1 1 172 -6289 * 4788 148 13 24 chr21 15099534 15100505 -29807065 + L1PA7 LINE L1 1104 2059 -4397 16627 102 11 0 chr21 15100505 15103788 -29803782 + L1PA7 LINE L1 3187 6465 -4 25 65 0 0 chr21 15103901 15103947 -29803623 + AT_rich Low_complexity Low_complexity 1 46 0 318 132 0 0 chr21 15104561 15104614 -29802956 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 305 126 29 chr21 15104779 15104953 -29802617 - L2 LINE L2 -908 2406 2216 729 286 93 51 chr21 15107200 15107675 -29799895 - L1ME LINE L1 -355 5815 5314 1554 209 3 3 chr21 15107675 15107972 -29799598 - AluJo SINE Alu -15 297 1 729 286 93 51 chr21 15107972 15108023 -29799547 - L1ME LINE L1 -856 5314 5267 1479 271 64 56 chr21 15108052 15108558 -29799012 - L1ME LINE L1 -964 5182 4664 1959 110 4 0 chr21 15108558 15108854 -29798716 - AluSq SINE Alu 0 317 21 1479 271 64 56 chr21 15108854 15109227 -29798343 - L1ME LINE L1 -1482 4664 4295 21 71 0 0 chr21 15109775 15109817 -29797753 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr21 15110316 15110344 -29797226 + AT_rich Low_complexity Low_complexity 1 28 0 227 358 33 46 chr21 15111200 15111351 -29796219 - L2 LINE L2 -4 3309 3161 256 163 23 0 chr21 15112856 15112899 -29794671 - L3 LINE CR1 -944 633 590 304 260 26 0 chr21 15112919 15112996 -29794574 - L2 LINE L2 -2 3270 3192 702 297 72 53 chr21 15113163 15113691 -29793879 + L1MC4a LINE L1 5350 5887 -1921 521 263 41 29 chr21 15114775 15114946 -29792624 - MER69A DNA AcHobo -1 176 4 222 37 0 0 chr21 15116247 15116274 -29791296 + (A)n Simple_repeat Simple_repeat 1 27 0 624 306 51 5 chr21 15116864 15117060 -29790510 - MIR SINE MIR 0 262 58 677 299 47 49 chr21 15117818 15118223 -29789347 - MLT1I LTR MaLR 0 409 6 241 111 0 0 chr21 15120894 15120930 -29786640 + L2 LINE L2 3271 3306 -7 539 336 71 34 chr21 15121119 15121443 -29786127 - L3 LINE CR1 -193 1384 1049 297 298 79 35 chr21 15121451 15121565 -29786005 - L2 LINE L2 -1 3271 3153 24 0 0 0 chr21 15121721 15121745 -29785825 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr21 15121967 15122011 -29785559 + AT_rich Low_complexity Low_complexity 1 44 0 303 367 44 41 chr21 15122351 15122621 -29784949 + L1ME2 LINE L1 149 419 -5977 460 230 165 45 chr21 15122858 15123240 -29784330 + L1ME2 LINE L1 725 1152 -5244 1160 270 78 66 chr21 15123322 15124227 -29783343 + L1ME2 LINE L1 1343 2258 -4138 766 385 36 11 chr21 15124293 15124849 -29782721 + ERVL LTR ERVL 4258 4827 -937 757 367 25 16 chr21 15125566 15125934 -29781636 + LTR16A LTR ERVL 53 423 -27 768 275 51 18 chr21 15125953 15126346 -29781224 + L1ME2 LINE L1 4524 4929 -1286 24 32 0 0 chr21 15126358 15126389 -29781181 + AT_rich Low_complexity Low_complexity 1 31 0 948 240 32 58 chr21 15126414 15127021 -29780549 + L1ME2 LINE L1 4917 5512 -721 2106 183 0 3 chr21 15127053 15127419 -29780151 + MLT1A1 LTR MaLR 1 365 0 1329 238 160 9 chr21 15127458 15127921 -29779649 + L1ME2 LINE L1 5650 6182 -51 207 216 0 0 chr21 15128163 15128200 -29779370 - L2 LINE L2 -13 3300 3264 211 378 0 14 chr21 15128555 15128629 -29778941 - MER5A DNA MER1_type -28 161 89 22 56 0 0 chr21 15130829 15130865 -29776705 + AT_rich Low_complexity Low_complexity 1 36 0 392 300 95 61 chr21 15131147 15131878 -29775692 + L1M4 LINE L1 3030 4433 -1713 558 311 90 56 chr21 15131985 15132627 -29774943 + L1M4 LINE L1 4570 5233 -913 872 255 166 0 chr21 15132653 15132924 -29774646 - MER5C DNA MER1_type 0 324 9 333 347 90 53 chr21 15133149 15133774 -29773796 + L2 LINE L2 2564 3270 -2 198 0 0 0 chr21 15133867 15133889 -29773681 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 425 274 55 65 chr21 15134462 15134663 -29772907 - LTR67 LTR ERVL -2 555 357 716 253 12 24 chr21 15135232 15135402 -29772168 - MER20 DNA MER1_type -11 208 41 1908 139 10 7 chr21 15135567 15135877 -29771693 - AluSq SINE Alu -2 311 1 2441 47 3 3 chr21 15135901 15136199 -29771371 - AluY SINE Alu -13 298 1 34 42 0 0 chr21 15136220 15136268 -29771302 + AT_rich Low_complexity Low_complexity 1 48 0 1567 179 13 23 chr21 15136690 15136998 -29770572 + AluJb SINE Alu 1 305 -7 358 314 126 6 chr21 15137031 15137190 -29770380 - MER5B DNA MER1_type 0 178 1 252 149 0 0 chr21 15137342 15137389 -29770181 + (TC)n Simple_repeat Simple_repeat 2 48 0 182 438 27 0 chr21 15137760 15137872 -29769698 + MIR3 SINE MIR 81 195 -13 23 0 0 0 chr21 15137937 15137960 -29769610 + AT_rich Low_complexity Low_complexity 1 23 0 311 280 0 17 chr21 15139044 15139162 -29768408 + (TA)n Simple_repeat Simple_repeat 1 116 0 576 274 49 36 chr21 15139232 15139455 -29768115 + MIR SINE MIR 37 262 0 450 315 113 52 chr21 15139558 15139885 -29767685 + LTR16A LTR ERVL 104 450 0 1577 209 0 7 chr21 15139916 15140223 -29767347 - AluJb SINE Alu -7 305 1 1096 331 36 29 chr21 15140236 15140852 -29766718 + HERV16 LTR ERVL 37 656 -4340 1753 171 10 7 chr21 15141034 15141493 -29766077 - AluJb SINE Alu 0 460 1 1197 354 61 14 chr21 15141499 15142192 -29765378 + HERV16 LTR ERVL 826 1550 -3446 2294 303 52 34 chr21 15142316 15143462 -29764108 + HERV16 LTR ERVL 1818 3027 -1969 194 165 10 31 chr21 15143618 15143715 -29763855 + (TA)n Simple_repeat Simple_repeat 1 95 0 2495 149 13 10 chr21 15143718 15143734 -29763836 - MSTA LTR MaLR -26 387 373 2041 135 7 0 chr21 15143734 15144031 -29763539 + AluSx SINE Alu 1 299 -13 2495 149 13 10 chr21 15144031 15144416 -29763154 - MSTA LTR MaLR -40 373 1 305 238 24 12 chr21 15144417 15144501 -29763069 + HERV16 LTR ERVL 3093 3177 -2308 1594 186 96 6 chr21 15144580 15144914 -29762656 + MLT1A1 LTR MaLR 2 365 0 819 309 71 32 chr21 15145002 15145498 -29762072 + HERV16 LTR ERVL 3841 4355 -1409 2214 65 3 58 chr21 15147005 15147313 -29760257 - AluY SINE Alu -8 303 13 370 248 96 86 chr21 15147446 15147644 -29759926 + MIR SINE MIR 57 256 -6 423 333 145 18 chr21 15149892 15150174 -29757396 - L2 LINE L2 -5 3308 2991 204 239 15 0 chr21 15150458 15150525 -29757045 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr21 15150900 15150920 -29756650 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr21 15151329 15151360 -29756210 + AT_rich Low_complexity Low_complexity 1 31 0 1710 286 42 57 chr21 15152171 15153130 -29754440 + L1ME LINE L1 45 988 -5082 1643 252 69 2 chr21 15153136 15153612 -29753958 + L1MC4a LINE L1 7201 7708 -100 1375 268 48 23 chr21 15153616 15154221 -29753349 + L1M4 LINE L1 4542 5161 -985 219 370 0 0 chr21 15157029 15157102 -29750468 + L2 LINE L2 3185 3257 -15 316 321 67 12 chr21 15157936 15158114 -29749456 + MIR3 SINE MIR 5 193 -15 191 196 98 0 chr21 15161424 15161475 -29746095 - MIR SINE MIR -75 187 132 23 33 0 0 chr21 15162371 15162401 -29745169 + AT_rich Low_complexity Low_complexity 1 30 0 216 291 12 58 chr21 15163139 15163225 -29744345 - MIR SINE MIR -18 244 163 324 0 0 0 chr21 15163658 15163694 -29743876 + (A)n Simple_repeat Simple_repeat 1 36 0 593 181 0 0 chr21 15163769 15163874 -29743696 - FLAM_A SINE Alu -5 137 33 1151 258 71 32 chr21 15164052 15164432 -29743138 - MSTD LTR MaLR -1 395 1 232 259 0 0 chr21 15164464 15164518 -29743052 + (CATA)n Simple_repeat Simple_repeat 3 56 0 781 330 39 17 chr21 15165294 15165652 -29741918 + LTR33 LTR ERVL 155 520 -1 24 0 0 0 chr21 15165737 15165761 -29741809 + AT_rich Low_complexity Low_complexity 1 24 0 358 273 47 0 chr21 15165776 15165904 -29741666 + MER110 LTR ERV1 310 443 -48 22 0 0 0 chr21 15165970 15165992 -29741578 + AT_rich Low_complexity Low_complexity 1 22 0 363 293 103 0 chr21 15167061 15167177 -29740393 + LTR33 LTR ERVL 303 430 -91 275 148 39 16 chr21 15168267 15168395 -29739175 + (TA)n Simple_repeat Simple_repeat 2 132 0 259 136 0 23 chr21 15168708 15168752 -29738818 - tRNA-Cys-TGC tRNA tRNA -30 45 3 507 242 124 6 chr21 15168758 15168919 -29738651 + MIR SINE MIR 44 223 -39 32 26 0 0 chr21 15169212 15169251 -29738319 + AT_rich Low_complexity Low_complexity 1 39 0 290 101 38 51 chr21 15170969 15171048 -29736522 + GA-rich Low_complexity Low_complexity 4 81 0 21 36 0 0 chr21 15172308 15172336 -29735234 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr21 15172450 15172489 -29735081 + AT_rich Low_complexity Low_complexity 1 39 0 329 77 19 0 chr21 15172510 15172562 -29735008 - Alu SINE Alu 0 302 250 333 211 13 0 chr21 15172567 15172643 -29734927 - L1MB2 LINE L1 -74 6097 6021 3030 221 60 68 chr21 15172657 15174162 -29733408 - L1M4c LINE L1 -4352 2211 800 282 325 26 26 chr21 15174352 15174503 -29733067 - L1M4c LINE L1 -5738 565 415 24 91 0 0 chr21 15175782 15175848 -29731722 + AT_rich Low_complexity Low_complexity 1 66 0 2362 72 0 7 chr21 15176943 15177247 -29730323 + AluY SINE Alu 1 302 -9 1632 179 4 7 chr21 15177573 15177852 -29729718 + AluJb SINE Alu 1 278 -34 3241 123 16 15 chr21 15177854 15178568 -29729002 - L1P5 LINE L1 -412 5739 5030 189 107 0 0 chr21 15178704 15178732 -29728838 + (T)n Simple_repeat Simple_repeat 1 28 0 209 284 122 14 chr21 15178947 15179021 -29728549 + L2 LINE L2 3175 3256 -16 663 290 68 53 chr21 15180217 15180659 -29726911 - L1MC4a LINE L1 -528 5642 5496 21 0 0 0 chr21 15183200 15183221 -29724349 + AT_rich Low_complexity Low_complexity 1 21 0 322 311 47 9 chr21 15184553 15184659 -29722911 - MIR SINE MIR -66 142 33 2125 140 7 0 chr21 15185585 15185892 -29721678 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr21 15185995 15186026 -29721544 + AT_rich Low_complexity Low_complexity 1 31 0 776 208 30 1 chr21 15186512 15186691 -29720879 + L1MA7 LINE L1 5867 6017 -139 501 174 25 25 chr21 15186692 15186813 -29720757 + L1MA7 LINE L1 6160 6280 -11 353 353 7 7 chr21 15187128 15187281 -29720289 + MIR SINE MIR 110 262 0 314 303 181 13 chr21 15187486 15187641 -29719929 + MIR3 SINE MIR 16 196 -12 789 257 5 28 chr21 15187723 15187937 -29719633 - LTR16A1 LTR ERVL 0 457 249 35 63 0 0 chr21 15189042 15189105 -29718465 + AT_rich Low_complexity Low_complexity 1 63 0 221 163 20 0 chr21 15189164 15189213 -29718357 + CT-rich Low_complexity Low_complexity 3 52 0 23 0 0 0 chr21 15190561 15190584 -29716986 + AT_rich Low_complexity Low_complexity 1 23 0 231 348 0 11 chr21 15191072 15191161 -29716409 - MIR SINE MIR -103 105 18 28 48 0 0 chr21 15192279 15192321 -29715249 + AT_rich Low_complexity Low_complexity 1 42 0 2946 181 6 0 chr21 15192628 15193110 -29714460 + L1MA4 LINE L1 1 485 -4843 * 7545 172 37 17 chr21 15193108 15195548 -29712022 + L1MA4 LINE L1 3952 6452 -30 22 0 0 0 chr21 15195558 15195580 -29711990 + AT_rich Low_complexity Low_complexity 1 22 0 941 305 58 22 chr21 15195580 15195941 -29711629 + L2 LINE L2 2131 2504 -810 2317 97 3 0 chr21 15196841 15197150 -29710420 + AluY SINE Alu 1 310 -1 25542 148 17 16 chr21 15197226 15202764 -29704806 + L1PA10 LINE L1 859 6483 0 190 0 0 0 chr21 15202764 15202785 -29704785 + (TAAAA)n Simple_repeat Simple_repeat 1 160 0 1611 0 0 0 chr21 15202899 15203079 -29704491 + L1PA3 LINE L1 5792 5971 -184 691 253 55 93 chr21 15203265 15203629 -29703941 - MLT1H LTR MaLR -188 361 12 746 272 78 19 chr21 15205133 15205401 -29702169 - MLT1H LTR MaLR -258 291 8 1543 204 3 0 chr21 15207315 15207599 -29699971 - AluJo SINE Alu -12 300 16 1567 210 97 44 chr21 15209202 15209678 -29697892 + MLT1D LTR MaLR 5 505 0 449 362 37 7 chr21 15209678 15210004 -29697566 + L2 LINE L2 2742 3077 -236 2561 82 119 5 chr21 15210046 15210448 -29697122 + LTR7 LTR ERV1 1 448 -2 27696 84 19 13 chr21 15210450 15214417 -29693153 + HERVH LTR ERV1 1 3993 -3720 4164 155 1 3 chr21 15214419 15215082 -29692488 + HERVH LTR ERV1 4488 5149 -2564 1370 128 23 5 chr21 15215079 15215298 -29692272 + HERVH LTR ERV1 5597 5819 -1894 * 2254 107 53 13 chr21 15215298 15215673 -29691897 + HERVH LTR ERV1 7324 7713 0 2490 87 119 10 chr21 15215673 15216077 -29691493 + LTR7 LTR ERV1 1 448 -2 240 356 115 11 chr21 15216088 15216262 -29691308 + L2 LINE L2 3117 3308 -5 1714 142 31 3 chr21 15216312 15216600 -29690970 - THE1C LTR MaLR 0 375 80 963 183 48 11 chr21 15216598 15216784 -29690786 - THE1C LTR MaLR -182 193 1 * 441 264 101 68 chr21 15216929 15217346 -29690224 - MLT1H LTR MaLR 0 595 118 928 252 96 62 chr21 15217362 15217747 -29689823 + MLT2B1 LTR ERVL 22 419 -101 227 167 56 19 chr21 15217783 15217837 -29689733 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 24 67 0 0 chr21 15218066 15218111 -29689459 + AT_rich Low_complexity Low_complexity 1 45 0 36 40 0 0 chr21 15218327 15218377 -29689193 + AT_rich Low_complexity Low_complexity 1 50 0 238 218 0 51 chr21 15219539 15219617 -29687953 + T-rich Low_complexity Low_complexity 2 75 0 2118 124 3 3 chr21 15219645 15219943 -29687627 + AluSq SINE Alu 1 298 -15 1280 301 52 26 chr21 15220266 15220907 -29686663 - MLT2F LTR ERVL 0 663 2 871 293 106 46 chr21 15221152 15221626 -29685944 + LTR40a LTR ERVL 3 504 -15 637 314 15 0 chr21 15221721 15221925 -29685645 - ERVL-F LTR ERVL -331 5433 5227 988 115 6 0 chr21 15221932 15222088 -29685482 - L1MA4A LINE L1 -11 6292 6136 11718 183 33 27 chr21 15222094 15224957 -29682613 + L1MA4A LINE L1 2630 5502 -801 1479 112 105 112 chr21 15224957 15225271 -29682299 + AluSx SINE Alu 1 312 0 11718 183 33 27 chr21 15225271 15225905 -29681665 + L1MA4A LINE L1 5502 6131 -172 1427 311 92 21 chr21 15225905 15226567 -29681003 - ERVL-F LTR ERVL -526 5238 4530 824 313 13 0 chr21 15226558 15226788 -29680782 - ERVL-F LTR ERVL -1352 4412 4180 * 371 278 94 5 chr21 15226856 15227091 -29680479 - ERVL-F LTR ERVL -1640 4014 3741 482 290 47 24 chr21 15227143 15227312 -29680258 + MIR SINE MIR 89 261 -1 235 372 32 0 chr21 15227616 15227710 -29679860 + L2 LINE L2 3174 3270 -2 239 273 80 23 chr21 15229514 15229602 -29677968 - MIR3 SINE MIR -8 200 108 366 324 96 41 chr21 15230186 15230405 -29677165 - L1MC/D LINE L1 -2072 5736 5506 2220 115 0 0 chr21 15231548 15231860 -29675710 - AluSx SINE Alu 0 312 1 2495 80 122 5 chr21 15231967 15232368 -29675202 + LTR7 LTR ERV1 1 448 -2 15798 100 16 19 chr21 15232370 15235249 -29672321 + HERVH LTR ERV1 1 2995 -4718 6225 76 6 2 chr21 15235228 15236079 -29671491 + HERVH LTR ERV1 3140 3993 -3720 * 4325 142 0 3 chr21 15236081 15236745 -29670825 + HERVH LTR ERV1 4488 5149 -2564 1280 137 38 0 chr21 15236746 15236958 -29670612 + HERVH LTR ERV1 5600 5819 -1894 * 2346 100 48 13 chr21 15236956 15237335 -29670235 + HERVH LTR ERV1 7322 7713 0 2528 84 119 7 chr21 15237335 15237738 -29669832 + LTR7 LTR ERV1 1 448 -2 23 86 0 0 chr21 15238540 15238598 -29668972 + AT_rich Low_complexity Low_complexity 1 58 0 3337 35 12 0 chr21 15239336 15239739 -29667831 + L1PA3 LINE L1 5745 6152 -3 1498 215 16 50 chr21 15240544 15240921 -29666649 + MLT1A2 LTR MaLR 11 374 0 1425 243 22 3 chr21 15241933 15242254 -29665316 + MER58B DNA MER1_type 1 327 -14 222 382 134 0 chr21 15242782 15242939 -29664631 - L2 LINE L2 -960 2354 2177 314 268 80 36 chr21 15243325 15243463 -29664107 + Zaphod DNA AcHobo 2 145 -3886 795 197 0 0 chr21 15243519 15243656 -29663914 + MSTD LTR MaLR 3 139 -257 1142 162 6 0 chr21 15243671 15243850 -29663720 + AluJb SINE Alu 131 310 -2 905 186 69 14 chr21 15243891 15244104 -29663466 + MSTD LTR MaLR 212 396 0 8852 222 88 55 chr21 15244104 15244828 -29662742 + Zaphod DNA AcHobo 238 936 -3095 492 231 66 41 chr21 15244828 15244949 -29662621 + FLAM_A SINE Alu 2 125 -8 8852 222 88 55 chr21 15244949 15246756 -29660814 + Zaphod DNA AcHobo 936 2682 -1349 1802 138 7 4 chr21 15246756 15247025 -29660545 + AluSx SINE Alu 33 302 -10 8852 222 88 55 chr21 15247025 15247043 -29660527 + Zaphod DNA AcHobo 2682 2698 -1333 413 189 278 0 chr21 15247043 15247133 -29660437 + FLAM_A SINE Alu 1 115 -18 219 69 0 0 chr21 15247133 15247162 -29660408 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 8852 222 88 55 chr21 15247162 15248281 -29659289 + Zaphod DNA AcHobo 2697 4031 0 243 152 0 0 chr21 15248446 15248492 -29659078 + T-rich Low_complexity Low_complexity 1 46 0 508 252 36 112 chr21 15248696 15248946 -29658624 - LTR33 LTR ERVL -290 231 1 24 0 0 0 chr21 15249154 15249178 -29658392 + AT_rich Low_complexity Low_complexity 1 24 0 2122 100 7 0 chr21 15249215 15249495 -29658075 + AluSq SINE Alu 15 296 -17 838 339 44 15 chr21 15249640 15250030 -29657540 - LTR16A LTR ERVL -34 416 16 1169 355 27 17 chr21 15250171 15250765 -29656805 - HERVL LTR ERVL -2104 3550 2951 1537 114 18 4 chr21 15250958 15251185 -29656385 - MER30 DNA MER1_type 0 230 1 222 323 0 0 chr21 15251249 15251311 -29656259 + MER5A DNA MER1_type 128 189 0 314 362 73 26 chr21 15252016 15252400 -29655170 - LTR33 LTR ERVL -101 420 19 300 357 73 63 chr21 15252683 15252983 -29654587 - L2 LINE L2 -35 3237 2935 14103 195 24 33 chr21 15253594 15254232 -29653338 - L1MA4 LINE L1 -3 6479 5837 1880 156 3 3 chr21 15254232 15254539 -29653031 - AluSx SINE Alu -5 307 1 14103 195 24 33 chr21 15254539 15254894 -29652676 - L1MA4 LINE L1 -645 5837 5480 5197 55 8 5 chr21 15254894 15255565 -29652005 - L1PA7 LINE L1 -1 6153 5481 1454 188 30 20 chr21 15255565 15255863 -29651707 - AluSx SINE Alu -11 301 1 14103 195 24 33 chr21 15255863 15260532 -29647038 - L1MA4 LINE L1 -1001 5481 842 189 0 0 0 chr21 15260532 15260553 -29647017 + (TG)n Simple_repeat Simple_repeat 2 22 0 14103 195 24 33 chr21 15260553 15261386 -29646184 - L1MA4 LINE L1 -5640 842 3 2363 68 7 3 chr21 15261782 15262091 -29645479 + AluY SINE Alu 1 310 -1 231 88 0 0 chr21 15262162 15262196 -29645374 + (A)n Simple_repeat Simple_repeat 1 34 0 1028 162 0 0 chr21 15262880 15263047 -29644523 + MLT1B LTR MaLR 2 168 -222 21338 159 28 19 chr21 15263061 15267995 -29639575 + L1MA3 LINE L1 14 5047 -2677 2429 84 0 0 chr21 15267995 15268304 -29639266 + AluY SINE Alu 2 310 -1 21338 159 28 19 chr21 15268304 15271004 -29636566 + L1MA3 LINE L1 5047 7722 -2 313 151 0 0 chr21 15271025 15271078 -29636492 + L1MB8 LINE L1 6126 6178 0 972 181 6 0 chr21 15271155 15271326 -29636244 + MLT1B LTR MaLR 219 390 0 2143 121 3 0 chr21 15271726 15272024 -29635546 - AluSx SINE Alu -13 299 1 278 232 72 0 chr21 15272502 15272571 -29634999 + MIR SINE MIR 140 213 -49 2013 243 38 16 chr21 15272603 15273106 -29634464 - LTR40a LTR ERVL -5 514 1 410 236 45 11 chr21 15273440 15273529 -29634041 + MER58A DNA MER1_type 1 92 -15 1038 174 35 5 chr21 15273534 15273735 -29633835 - L1PA16 LINE L1 -4 6162 5956 712 215 38 25 chr21 15273760 15273918 -29633652 + MER58A DNA MER1_type 65 224 0 2373 149 29 7 chr21 15273947 15274363 -29633207 + L1PA16 LINE L1 5729 6153 -13 1693 161 0 4 chr21 15275769 15276036 -29631534 - AluJo SINE Alu -44 268 3 2116 163 51 22 chr21 15276227 15276639 -29630931 - MSTB LTR MaLR -2 424 1 3513 234 153 40 chr21 15276833 15278245 -29629325 + L1MC4 LINE L1 6458 8028 -14 5878 132 80 2 chr21 15278423 15279723 -29627847 - L1MA1 LINE L1 -7 7316 5930 * 5935 214 74 19 chr21 15279721 15281317 -29626253 - L1 LINE L1 -815 5331 3649 342 197 28 0 chr21 15281346 15281417 -29626153 + L1M4 LINE L1 474 546 -5996 2135 250 29 17 chr21 15281438 15282097 -29625473 + L1M4 LINE L1 4639 5305 -1339 1995 129 0 0 chr21 15282103 15282423 -29625147 - AluSg SINE Alu 0 320 1 502 209 9 9 chr21 15282433 15282538 -29625032 - L1MA1 LINE L1 -1237 5930 5826 2144 234 25 12 chr21 15282539 15283053 -29624517 - L1MA1 LINE L1 -3402 3765 3245 6552 217 40 23 chr21 15283063 15285438 -29622132 - L1MA1 LINE L1 -3970 3198 809 235 186 0 0 chr21 15288635 15288678 -29618892 - MSTB1 LTR MaLR -13 419 377 353 178 12 31 chr21 15288704 15288867 -29618703 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 429 179 57 46 chr21 15288892 15289286 -29618284 + (CATTA)n Simple_repeat Simple_repeat 1 398 0 * 437 190 27 54 chr21 15289215 15289399 -29618171 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 448 137 16 33 chr21 15289413 15289595 -29617975 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 333 187 0 36 chr21 15289653 15289819 -29617751 + (CATAA)n Simple_repeat Simple_repeat 5 164 0 413 176 0 34 chr21 15289870 15290166 -29617404 + (TATAA)n Simple_repeat Simple_repeat 1 285 0 376 119 17 0 chr21 15290166 15290225 -29617345 - MSTB1 LTR MaLR -372 60 1 609 120 55 0 chr21 15290276 15290568 -29617002 + (TATAG)n Simple_repeat Simple_repeat 1 307 0 203 118 44 29 chr21 15290568 15290636 -29616934 + (CTATA)n Simple_repeat Simple_repeat 2 70 0 399 48 102 24 chr21 15290639 15290806 -29616764 + (TA)n Simple_repeat Simple_repeat 1 180 0 338 160 19 64 chr21 15290807 15290963 -29616607 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 439 96 51 40 chr21 15290963 15291140 -29616430 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 21 57 0 0 chr21 15291140 15291175 -29616395 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr21 15291183 15291226 -29616344 + MSTB1 LTR MaLR 377 419 -13 2020 144 49 44 chr21 15291243 15291610 -29615960 - MSTB1 LTR MaLR -63 369 1 259 271 124 16 chr21 15292439 15292568 -29615002 - MIR SINE MIR -73 189 47 471 290 49 19 chr21 15292573 15292735 -29614835 + MIR SINE MIR 20 186 -76 307 82 41 0 chr21 15293288 15293337 -29614233 - Alu SINE Alu -6 296 246 938 167 0 0 chr21 15293337 15293481 -29614089 - AluJ SINE Alu -33 279 136 329 82 82 0 chr21 15293491 15293564 -29614006 + CT-rich Low_complexity Low_complexity 2 80 0 838 160 0 0 chr21 15293566 15293697 -29613873 - AluJ SINE Alu -169 133 3 21 0 0 0 chr21 15294452 15294473 -29613097 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr21 15295144 15295190 -29612380 + (CA)n Simple_repeat Simple_repeat 2 47 0 635 272 94 13 chr21 15295307 15295531 -29612039 - MIR SINE MIR 0 262 21 697 313 96 21 chr21 15295709 15295790 -29611780 + LTR41 LTR ERVL 1 75 -698 2083 171 26 0 chr21 15295790 15296169 -29611401 - MLT1B LTR MaLR -1 389 1 697 313 96 21 chr21 15296169 15296505 -29611065 + LTR41 LTR ERVL 75 449 -324 362 207 116 167 chr21 15296602 15297052 -29610518 + LTR41 LTR ERVL 337 763 -10 253 239 0 0 chr21 15297126 15297193 -29610377 + L1M4 LINE L1 4171 4237 -1909 494 216 201 0 chr21 15297614 15297753 -29609817 + MER58B DNA MER1_type 46 338 -3 194 246 18 18 chr21 15297761 15297818 -29609752 - L2 LINE L2 -1335 1979 1923 21 36 0 0 chr21 15298574 15298602 -29608968 + AT_rich Low_complexity Low_complexity 1 28 0 2156 248 45 24 chr21 15298610 15299351 -29608219 + L1M4 LINE L1 3289 4044 -2102 2062 75 0 0 chr21 15299674 15299942 -29607628 - L1PA8 LINE L1 -1 6171 5904 21 82 0 0 chr21 15300521 15300570 -29607000 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr21 15301140 15301169 -29606401 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 15301313 15301343 -29606227 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr21 15301782 15301811 -29605759 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 15301833 15301861 -29605709 + AT_rich Low_complexity Low_complexity 1 28 0 524 290 176 30 chr21 15303658 15303997 -29603573 - MLT1J2 LTR MaLR 0 450 60 13867 185 32 2 chr21 15304520 15307942 -29599628 - L1 LINE L1 -1026 6539 3017 613 182 14 136 chr21 15308591 15308805 -29598765 - MER53 DNA DNA 0 189 2 395 398 11 6 chr21 15309395 15309576 -29597994 - LTR16C LTR ERVL -4 487 306 1497 200 29 101 chr21 15310236 15310647 -29596923 + MLT2D LTR ERVL 3 479 -41 213 197 40 0 chr21 15310679 15310755 -29596815 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr21 15311725 15311747 -29595823 + AT_rich Low_complexity Low_complexity 1 22 0 416 378 27 0 chr21 15312984 15313132 -29594438 - L2 LINE L2 -2079 1235 1084 1365 270 276 11 chr21 15313269 15314070 -29593500 + L1ME1 LINE L1 38 1050 -5346 * 1660 254 58 67 chr21 15314068 15314598 -29592972 + L1ME1 LINE L1 2742 3276 -2939 201 74 0 0 chr21 15314598 15314625 -29592945 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 40 0 0 chr21 15314634 15314659 -29592911 + (GA)n Simple_repeat Simple_repeat 2 26 0 1660 254 58 67 chr21 15314659 15315040 -29592530 + L1ME1 LINE L1 3284 3654 -2561 2517 243 95 38 chr21 15315076 15315335 -29592235 + L1ME1 LINE L1 3781 4024 -2191 1455 234 103 21 chr21 15315335 15315800 -29591770 + MLT1D LTR MaLR 1 503 -2 2517 243 95 38 chr21 15315800 15316364 -29591206 + L1ME1 LINE L1 4024 4691 -1524 739 286 14 23 chr21 15316364 15316581 -29590989 - MER58C DNA MER1_type 0 215 1 2517 243 95 38 chr21 15316581 15316915 -29590655 + L1ME1 LINE L1 4691 5005 -1210 2028 139 48 23 chr21 15317025 15317378 -29590192 - THE1B LTR MaLR -2 362 1 347 267 0 0 chr21 15317404 15317494 -29590076 + L1ME1 LINE L1 5209 5298 -917 702 267 0 0 chr21 15317570 15317716 -29589854 + MER58B DNA MER1_type 196 341 0 2728 232 27 68 chr21 15317727 15318659 -29588911 + L1ME1 LINE L1 5337 6230 -5 272 361 83 12 chr21 15318785 15318954 -29588616 + MER5A DNA MER1_type 9 189 0 249 180 0 0 chr21 15322010 15322060 -29585510 + T-rich Low_complexity Low_complexity 1 50 0 2091 126 0 7 chr21 15322466 15322768 -29584802 + AluSg SINE Alu 1 300 -10 3038 160 10 12 chr21 15323310 15323828 -29583742 + Tigger1 DNA MER2_type 31 547 -1871 6260 109 0 7 chr21 15323828 15325735 -29581835 + L1PA12 LINE L1 4261 6165 -3 2407 117 28 17 chr21 15327420 15327778 -29579792 + THE1B LTR MaLR 1 362 -2 912 135 0 0 chr21 15328516 15328664 -29578906 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 279 173 0 0 chr21 15328664 15328716 -29578854 + G-rich Low_complexity Low_complexity 2 53 0 270 295 16 21 chr21 15328842 15328950 -29578620 - MIR SINE MIR -78 130 24 232 313 9 54 chr21 15329343 15329455 -29578115 + MIR3 SINE MIR 56 162 -46 229 167 17 17 chr21 15330831 15330891 -29576679 + GA-rich Low_complexity Low_complexity 1 60 0 692 194 7 0 chr21 15332013 15332168 -29575402 - MER3 DNA MER1_type 0 2624 2469 322 221 44 0 chr21 15332166 15332234 -29575336 - MER3 DNA MER1_type -92 117 47 * 243 170 0 0 chr21 15333059 15333106 -29574464 + (AATTG)n Simple_repeat Simple_repeat 3 49 0 2928 294 89 16 chr21 15333173 15334742 -29572828 + L1 LINE L1 3658 5341 -805 6238 176 52 43 chr21 15334746 15335704 -29571866 + L1PA8A LINE L1 5134 6081 -1704 204 40 0 0 chr21 15335704 15335729 -29571841 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 6238 176 52 43 chr21 15335729 15337366 -29570204 + L1PA8A LINE L1 6081 7769 -16 2024 147 0 3 chr21 15337372 15337686 -29569884 + AluSp SINE Alu 1 313 0 522 348 156 31 chr21 15337924 15338220 -29569350 + L2 LINE L2 1711 1968 -1304 273 29 0 0 chr21 15338220 15338254 -29569316 + (TG)n Simple_repeat Simple_repeat 2 35 0 522 348 156 31 chr21 15338254 15338268 -29569302 + L2 LINE L2 1968 1979 -1293 189 0 0 0 chr21 15338268 15338289 -29569281 + (GA)n Simple_repeat Simple_repeat 2 22 0 522 348 156 31 chr21 15338289 15339151 -29568419 + L2 LINE L2 1979 3081 -191 336 148 0 0 chr21 15339166 15339227 -29568343 + (TC)n Simple_repeat Simple_repeat 1 61 0 218 182 0 0 chr21 15339357 15339401 -29568169 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 25 0 0 0 chr21 15339440 15339465 -29568105 + AT_rich Low_complexity Low_complexity 1 25 0 1945 96 48 0 chr21 15340339 15340658 -29566912 + AluSx SINE Alu 1 332 0 21 71 0 0 chr21 15341442 15341484 -29566086 + AT_rich Low_complexity Low_complexity 1 42 0 376 126 0 165 chr21 15342955 15343082 -29564488 + L1MA8 LINE L1 6004 6109 -182 940 245 14 0 chr21 15344597 15344809 -29562761 - MER20 DNA MER1_type -3 216 2 266 345 113 28 chr21 15344840 15344982 -29562588 + MER5A DNA MER1_type 35 188 -1 2192 97 0 6 chr21 15345287 15345598 -29561972 + AluY SINE Alu 1 309 -2 963 157 17 23 chr21 15345613 15345785 -29561785 + AluSg/x SINE Alu 127 297 -13 22 56 0 0 chr21 15346635 15346671 -29560899 + AT_rich Low_complexity Low_complexity 1 36 0 759 279 99 17 chr21 15346742 15347116 -29560454 + L1MC4a LINE L1 5260 5659 -512 1250 205 97 148 chr21 15347145 15347741 -29559829 - MLT1E2 LTR MaLR 0 626 61 621 267 25 43 chr21 15347799 15348080 -29559490 + L1MC4a LINE L1 5677 5952 -1856 1500 207 29 100 chr21 15348855 15349275 -29558295 - MLT1B LTR MaLR 0 390 1 762 11 0 0 chr21 15349748 15349835 -29557735 + (AATAG)n Simple_repeat Simple_repeat 5 91 0 1926 158 33 43 chr21 15350601 15350804 -29556766 - MLT1A1 LTR MaLR 0 365 166 2183 128 0 0 chr21 15350804 15351110 -29556460 + AluSx SINE Alu 3 308 -4 1926 158 33 43 chr21 15351110 15351274 -29556296 - MLT1A1 LTR MaLR -199 166 2 24 0 0 0 chr21 15351500 15351524 -29556046 + AT_rich Low_complexity Low_complexity 1 24 0 25788 76 10 6 chr21 15351990 15358093 -29549477 + L1PA6 LINE L1 22 6154 0 21 0 0 0 chr21 15358093 15358114 -29549456 + AT_rich Low_complexity Low_complexity 1 21 0 2103 122 0 39 chr21 15358132 15358443 -29549127 - AluSg SINE Alu -11 299 1 222 356 15 23 chr21 15358469 15358601 -29548969 + MER5A DNA MER1_type 18 148 -41 1679 130 0 4 chr21 15359120 15359374 -29548196 - L1PA15 LINE L1 -4 6161 5909 252 0 0 0 chr21 15361172 15361200 -29546370 + (TC)n Simple_repeat Simple_repeat 1 28 0 658 272 51 28 chr21 15363310 15363564 -29544006 - Charlie8 DNA MER1_type -2156 261 2 25 0 0 0 chr21 15363937 15363962 -29543608 + AT_rich Low_complexity Low_complexity 1 25 0 203 217 33 0 chr21 15364610 15364670 -29542900 + T-rich Low_complexity Low_complexity 1 62 0 2424 78 7 0 chr21 15364750 15365059 -29542511 - AluY SINE Alu 0 311 1 459 322 141 31 chr21 15365075 15365557 -29542013 - MLT1L LTR MaLR -80 535 1 1981 174 59 45 chr21 15365822 15366246 -29541324 - MSTB1 LTR MaLR -2 430 1 373 235 0 0 chr21 15366976 15367057 -29540513 - MER52A LTR ERV1 -82 1673 1593 * 1181 277 82 74 chr21 15367049 15367855 -29539715 - MER52A LTR ERV1 -281 1474 663 238 336 82 0 chr21 15369143 15369265 -29538305 - MIR3 SINE MIR -31 177 46 21 57 0 0 chr21 15371790 15371825 -29535745 + AT_rich Low_complexity Low_complexity 1 35 0 5135 177 27 20 chr21 15371842 15372486 -29535084 - L1PA16 LINE L1 -21 6145 5507 2354 106 0 0 chr21 15372486 15372798 -29534772 - AluSx SINE Alu 0 312 1 5135 177 27 20 chr21 15372798 15374002 -29533568 - L1PA16 LINE L1 -659 5507 4288 2309 228 12 8 chr21 15373993 15374589 -29532981 - L1 LINE L1 -1628 4518 3921 * 377 273 74 0 chr21 15376367 15376488 -29531082 - L2 LINE L2 -229 3043 2914 234 252 55 10 chr21 15376608 15376713 -29530857 + MLT1I LTR MaLR 32 148 -261 260 258 23 94 chr21 15376865 15376993 -29530577 + MLT1H LTR MaLR 430 548 -1 25 31 0 0 chr21 15377106 15377138 -29530432 + AT_rich Low_complexity Low_complexity 1 32 0 592 245 42 42 chr21 15377226 15377442 -29530128 - L1MA9 LINE L1 -39 6273 6058 6466 76 18 10 chr21 15379844 15380772 -29526798 + L1PA10 LINE L1 5223 6157 -11 1378 221 17 40 chr21 15382695 15383048 -29524522 - MLT1A1 LTR MaLR -2 363 19 21 0 0 0 chr21 15383107 15383128 -29524442 + AT_rich Low_complexity Low_complexity 1 21 0 198 268 0 0 chr21 15383466 15383507 -29524063 - L3b LINE CR1 -13 1570 1530 1984 311 100 17 chr21 15383999 15385009 -29522561 - HERV16 LTR ERVL -3902 1094 1 676 305 82 72 chr21 15385030 15385433 -29522137 - LTR16A LTR ERVL -23 427 21 1497 294 89 39 chr21 15385467 15386533 -29521037 + L1MC4 LINE L1 6920 8038 -4 335 311 0 0 chr21 15386953 15387043 -29520527 + L1MC4 LINE L1 6614 6703 -1339 * 349 300 0 0 chr21 15386965 15387055 -29520515 - L1MC4 LINE L1 -1339 6703 6614 635 172 90 0 chr21 15387076 15387198 -29520372 + FLAM_A SINE Alu 1 133 0 2372 123 5 21 chr21 15388627 15389008 -29518562 - THE1C LTR MaLR 0 375 1 2013 117 29 0 chr21 15390241 15390555 -29517015 - AluSx SINE Alu 0 322 1 2070 135 7 0 chr21 15390885 15391188 -29516382 + AluSq SINE Alu 1 305 -8 505 192 16 0 chr21 15391188 15391313 -29516257 + GA-rich Low_complexity Low_complexity 1 127 0 1698 218 60 3 chr21 15391428 15391638 -29515932 - MLT1F LTR MaLR -5 537 340 2626 163 5 0 chr21 15391638 15392068 -29515502 + MSTB1 LTR MaLR 1 432 0 1698 218 60 3 chr21 15392068 15392370 -29515200 - MLT1F LTR MaLR -202 340 1 275 291 78 82 chr21 15392370 15392576 -29514994 - L2 LINE L2 -967 2347 2143 1042 212 57 79 chr21 15392996 15393364 -29514206 - MLT1A2 LTR MaLR -13 361 2 247 293 114 29 chr21 15393928 15394068 -29513502 - MIR SINE MIR -110 152 1 22 0 0 0 chr21 15394589 15394611 -29512959 + AT_rich Low_complexity Low_complexity 1 22 0 369 314 119 65 chr21 15397481 15397835 -29509735 + L1M4 LINE L1 3791 4163 -1983 976 175 0 0 chr21 15397835 15397995 -29509575 + FRAM SINE Alu 2 161 -15 331 288 68 14 chr21 15398006 15398152 -29509418 + L1M4 LINE L1 4166 4319 -1827 898 230 13 44 chr21 15398187 15398413 -29509157 + MER20 DNA MER1_type 1 219 0 36 82 0 0 chr21 15398598 15398683 -29508887 + AT_rich Low_complexity Low_complexity 1 85 0 336 236 42 85 chr21 15399952 15400117 -29507453 - MER39 LTR ERV1 0 707 550 883 203 212 0 chr21 15400135 15400347 -29507223 - AluJo SINE Alu -17 295 39 735 207 43 117 chr21 15400358 15400658 -29506912 - MER39 LTR ERV1 -170 537 260 402 151 0 0 chr21 15400756 15400829 -29506741 + (CA)n Simple_repeat Simple_repeat 1 73 0 1881 168 36 78 chr21 15401441 15401888 -29505682 + MSTB1 LTR MaLR 1 428 -4 201 129 0 0 chr21 15402108 15402139 -29505431 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 22 0 0 0 chr21 15402325 15402347 -29505223 + AT_rich Low_complexity Low_complexity 1 22 0 855 0 0 0 chr21 15403007 15403102 -29504468 + (TA)n Simple_repeat Simple_repeat 1 95 0 351 0 0 0 chr21 15403101 15403140 -29504430 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 207 0 0 0 chr21 15403156 15403179 -29504391 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 676 298 60 5 chr21 15404100 15404318 -29503252 - MIR SINE MIR -32 230 1 27 0 0 0 chr21 15404782 15404809 -29502761 + AT_rich Low_complexity Low_complexity 1 27 0 182 227 45 0 chr21 15405254 15405298 -29502272 + L2 LINE L2 3214 3259 -13 561 181 13 7 chr21 15405422 15405571 -29501999 + GA-rich Low_complexity Low_complexity 3 152 0 3146 67 9 20 chr21 15405571 15406018 -29501552 + LTR7 LTR ERV1 1 442 -8 209 159 45 0 chr21 15406022 15406066 -29501504 + GA-rich Low_complexity Low_complexity 2 47 0 1668 223 40 3 chr21 15407915 15408291 -29499279 - MLT1B LTR MaLR 0 390 1 40276 40 23 1 chr21 15408351 15414368 -29493202 + L1PA3 LINE L1 1 6155 0 2136 164 83 8 chr21 15414601 15414997 -29492573 + MSTB LTR MaLR 1 426 0 1662 162 18 6 chr21 15416001 15416329 -29491241 + L1MA4A LINE L1 5966 6297 -6 23 78 0 0 chr21 15416405 15416456 -29491114 + AT_rich Low_complexity Low_complexity 1 51 0 352 293 73 40 chr21 15417052 15417202 -29490368 - L1ME4a LINE L1 -35 6086 5932 25 31 0 0 chr21 15417281 15417313 -29490257 + AT_rich Low_complexity Low_complexity 1 32 0 729 257 22 0 chr21 15417336 15417515 -29490055 - MLT2B1 LTR ERVL 0 520 338 2915 16 0 0 chr21 15417898 15418244 -29489326 + AluYb8 SINE Alu 1 346 0 184 273 52 26 chr21 15418870 15418947 -29488623 + L2 LINE L2 3160 3238 -75 1568 217 46 11 chr21 15419177 15419546 -29488024 + MER70B LTR ERVL 93 474 -104 288 204 19 0 chr21 15419577 15419631 -29487939 - MLT1D LTR MaLR -446 59 5 2961 216 54 11 chr21 15420110 15420408 -29487162 + MER45B DNA AcHobo 243 527 -1054 2612 83 11 0 chr21 15420408 15420759 -29486811 + THE1A LTR MaLR 1 355 0 2961 216 54 11 chr21 15420759 15421215 -29486355 + MER45B DNA AcHobo 527 1030 -10 21 0 0 0 chr21 15421445 15421466 -29486104 + AT_rich Low_complexity Low_complexity 1 21 0 11577 205 114 20 chr21 15422131 15426861 -29480709 + L1PA11 LINE L1 1 5963 -1621 2514 91 0 19 chr21 15426861 15427223 -29480347 - THE1A LTR MaLR 0 355 1 10808 110 1 1 chr21 15427223 15428779 -29478791 - THE1A-int LTR MaLR -25 1555 1 2553 107 3 0 chr21 15428779 15429133 -29478437 - THE1A LTR MaLR 0 355 1 5553 108 34 25 chr21 15429133 15430789 -29476781 + L1PA11 LINE L1 5959 7612 0 25 0 0 0 chr21 15431170 15431195 -29476375 + AT_rich Low_complexity Low_complexity 1 25 0 899 122 96 0 chr21 15431210 15431366 -29476204 + L1PA13 LINE L1 5974 6144 -19 2120 110 7 0 chr21 15432567 15432848 -29474722 + AluSq SINE Alu 1 283 -30 3873 168 22 7 chr21 15433067 15433801 -29473769 - L1MB1 LINE L1 0 6168 5424 1229 178 9 9 chr21 15433821 15434034 -29473536 + AluJb SINE Alu 87 299 -13 448 64 0 77 chr21 15434037 15434115 -29473455 + L1M2 LINE L1 5363 5434 -878 261 0 0 0 chr21 15434330 15434359 -29473211 + (T)n Simple_repeat Simple_repeat 1 29 0 464 292 251 17 chr21 15435662 15436145 -29471425 + L2 LINE L2 1363 1958 -1356 311 260 51 117 chr21 15436162 15436358 -29471212 - L2 LINE L2 0 3313 3131 1295 255 65 19 chr21 15436373 15436788 -29470782 - MER70B LTR ERVL -144 434 1 1906 287 225 17 chr21 15436803 15438008 -29469562 - L2 LINE L2 -192 3121 1657 494 245 56 21 chr21 15438010 15438153 -29469417 + L2 LINE L2 2397 2544 -770 731 221 81 81 chr21 15438191 15438675 -29468895 + L1MC5 LINE L1 7193 7676 -285 757 144 8 8 chr21 15438691 15438855 -29468715 - AluJ SINE Alu 0 329 166 675 154 0 0 chr21 15438853 15438957 -29468613 - AluJ SINE Alu -203 109 6 * 277 271 104 36 chr21 15438977 15439169 -29468401 + L1MC5 LINE L1 7697 7901 -60 3623 53 0 7 chr21 15439278 15439729 -29467841 + LTR7 LTR ERV1 1 448 -2 18728 104 10 18 chr21 15439731 15442749 -29464821 + HERVH LTR ERV1 1 2995 -4718 748 160 49 0 chr21 15442728 15442872 -29464698 + HERVH LTR ERV1 3140 3290 -4423 * 10659 102 2 42 chr21 15442862 15444589 -29462981 + HERVH LTR ERV1 3492 5149 -2564 1339 120 19 0 chr21 15444590 15444806 -29462764 + HERVH LTR ERV1 5600 5819 -1894 2365 84 42 13 chr21 15444806 15445185 -29462385 + HERVH LTR ERV1 7324 7713 0 2835 88 2 7 chr21 15445185 15445595 -29461975 + LTR7 LTR ERV1 1 408 -42 182 296 57 34 chr21 15446643 15446731 -29460839 - MIR SINE MIR -57 205 116 852 112 154 7 chr21 15447626 15447769 -29459801 + AluSp SINE Alu 137 300 -13 26 0 0 0 chr21 15448521 15448547 -29459023 + AT_rich Low_complexity Low_complexity 1 26 0 1097 335 22 34 chr21 15449642 15450231 -29457339 + L1PA13 LINE L1 3 584 -6203 408 320 13 7 chr21 15450259 15450412 -29457158 + L1PA13 LINE L1 1358 1511 -5276 8865 232 23 24 chr21 15451235 15452603 -29454967 + L1PA13 LINE L1 1401 2769 -4028 2222 124 7 0 chr21 15452603 15452910 -29454660 + AluSg SINE Alu 1 309 -1 8865 232 23 24 chr21 15452910 15455128 -29452442 + L1PA13 LINE L1 2769 5071 -1726 2358 64 0 14 chr21 15455158 15455455 -29452115 + AluY SINE Alu 16 308 -3 4077 147 8 0 chr21 15455457 15456124 -29451446 + L1PA16 LINE L1 5491 6162 -4 405 250 76 0 chr21 15456281 15456413 -29451157 + Charlie7 DNA MER1_type 1 142 -2470 274 190 120 49 chr21 15456495 15456596 -29450974 + FLAM_C SINE Alu 1 107 -26 234 62 0 0 chr21 15456651 15456683 -29450887 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 936 227 0 0 chr21 15456685 15456857 -29450713 + AluJb SINE Alu 136 307 -5 255 152 0 0 chr21 15457110 15457156 -29450414 + GA-rich Low_complexity Low_complexity 3 48 0 2116 128 3 10 chr21 15457201 15457505 -29450065 + AluSg SINE Alu 1 302 -8 436 381 75 54 chr21 15458117 15458466 -29449104 - L2 LINE L2 0 3272 2917 511 288 59 15 chr21 15458819 15459252 -29448318 - L1MCc LINE L1 -4889 1534 1120 732 298 59 32 chr21 15460250 15460589 -29446981 + LTR16C LTR ERVL 131 478 -13 189 107 0 0 chr21 15461045 15461073 -29446497 + (TG)n Simple_repeat Simple_repeat 2 29 0 907 194 26 31 chr21 15462035 15462226 -29445344 + MER20 DNA MER1_type 29 218 -1 185 239 0 22 chr21 15463790 15463836 -29443734 - MIR SINE MIR -112 150 106 10032 170 46 37 chr21 15464432 15464767 -29442803 + L1M1 LINE L1 1868 2199 -5366 2405 94 3 0 chr21 15464767 15465076 -29442494 - AluSp SINE Alu -3 310 1 10032 170 46 37 chr21 15465076 15467709 -29439861 + L1M1 LINE L1 2199 4874 -2691 1692 179 0 21 chr21 15467709 15468024 -29439546 + AluSx SINE Alu 1 309 0 10032 170 46 37 chr21 15468024 15468122 -29439448 + L1M1 LINE L1 4874 4970 -2595 * 11294 189 20 11 chr21 15468120 15468176 -29439394 - L1P LINE L1 -1406 4740 4686 2127 140 73 12 chr21 15468176 15468519 -29439051 - THE1B LTR MaLR 0 364 1 11294 189 20 11 chr21 15468519 15470760 -29436810 - L1P LINE L1 -1460 4686 2422 31030 68 3 3 chr21 15470767 15475745 -29431825 + L1PA6 LINE L1 1178 6154 0 1112 249 0 8 chr21 15475992 15476233 -29431337 - MER8 DNA MER2_type 0 239 1 480 334 29 15 chr21 15477921 15478134 -29429436 - MIR SINE MIR -3 259 45 535 299 30 6 chr21 15479049 15479216 -29428354 - FAM SINE Alu -13 172 2 219 309 15 0 chr21 15479607 15479675 -29427895 + L2 LINE L2 3242 3310 -3 909 257 72 87 chr21 15479920 15480473 -29427097 + MLT1H LTR MaLR 1 545 -4 37 52 0 0 chr21 15480742 15480800 -29426770 + AT_rich Low_complexity Low_complexity 1 58 0 772 54 0 0 chr21 15481381 15481473 -29426097 + L1PA3 LINE L1 1 92 -6054 36765 37 27 1 chr21 15481477 15486870 -29420700 + L1PA3 LINE L1 623 6155 0 2529 65 0 0 chr21 15487514 15487820 -29419750 - AluY SINE Alu -5 306 1 459 295 16 0 chr21 15487979 15488101 -29419469 + MLT1I LTR MaLR 67 190 -219 987 205 0 0 chr21 15488483 15488668 -29418902 - L1PB4 LINE L1 -5 6151 5967 203 184 0 0 chr21 15488737 15488775 -29418795 + A-rich Low_complexity Low_complexity 1 38 0 7288 21 9 2 chr21 15490244 15491107 -29416463 - L1PA3 LINE L1 0 6155 5287 1069 58 0 0 chr21 15491106 15491245 -29416325 + L1P LINE L1 1920 2058 -4088 * 32 57 0 0 chr21 15491391 15491444 -29416126 + AT_rich Low_complexity Low_complexity 1 53 0 299 264 21 50 chr21 15491881 15492021 -29415549 - MIR SINE MIR -10 252 117 4421 234 80 64 chr21 15492062 15492125 -29415445 + L1MB7 LINE L1 2046 2107 -4275 2137 123 0 0 chr21 15492125 15492426 -29415144 - AluY SINE Alu -10 301 1 4421 234 80 64 chr21 15492426 15493886 -29413684 + L1MB7 LINE L1 2107 3737 -2645 2186 134 3 0 chr21 15493886 15494192 -29413378 + AluSx SINE Alu 1 307 -5 4421 234 80 64 chr21 15494192 15495203 -29412367 + L1MB7 LINE L1 3737 4730 -1652 4325 147 58 37 chr21 15495194 15496025 -29411545 + L1PB1 LINE L1 728 1575 -6010 * 8950 241 22 9 chr21 15496037 15499018 -29408552 + L1PB1 LINE L1 2804 5803 -1781 299 164 0 0 chr21 15499019 15499080 -29408490 + LTR1B LTR ERV1 1 61 -765 1405 106 55 5 chr21 15499084 15499301 -29408269 - MER52-int LTR ERV1 -4571 2520 2293 * 26119 152 7 11 chr21 15499299 15503389 -29404181 + LTR1B-int LTR ERV1 2527 6601 -490 1496 151 73 0 chr21 15503399 15503658 -29403912 + LTR1B-int LTR ERV1 6745 7022 -69 1488 238 128 61 chr21 15503660 15504370 -29403200 + LTR1B LTR ERV1 69 826 0 5775 161 14 12 chr21 15504370 15506154 -29401416 + L1PB1 LINE L1 5802 7587 -2 4297 189 38 5 chr21 15506161 15507695 -29399875 + L1MB7 LINE L1 4711 6294 -126 4223 165 14 0 chr21 15507708 15508434 -29399136 - L1PB4 LINE L1 -20 6136 5401 592 85 217 0 chr21 15508435 15508541 -29399029 + L1MB7 LINE L1 6276 6404 -16 27 29 0 0 chr21 15508541 15508575 -29398995 + AT_rich Low_complexity Low_complexity 1 34 0 932 260 81 113 chr21 15508804 15509802 -29397768 + MER52A LTR ERV1 640 1755 0 3495 182 55 34 chr21 15509802 15510533 -29397037 + MER52A-int LTR ERV1 2 747 -6344 1408 144 7 88 chr21 15510530 15510814 -29396756 + MER52A-int LTR ERV1 878 1138 -5953 * 2174 151 58 2 chr21 15511130 15511542 -29396028 + LTR19A LTR ERV1 1 435 -51 2042 51 0 0 chr21 15511543 15511796 -29395774 - L1PA5 LINE L1 -204 5950 5698 1473 74 5 10 chr21 15511796 15511999 -29395571 + L1PA5 LINE L1 5953 6154 0 359 85 17 0 chr21 15512002 15512061 -29395509 + LTR19A LTR ERV1 425 484 -2 457 275 38 56 chr21 15512334 15512494 -29395076 - MIR3 SINE MIR -21 187 31 705 109 16 16 chr21 15515681 15515809 -29391761 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 606 339 59 30 chr21 15517663 15517806 -29389764 + HAL1 LINE L1 16 153 -2354 210 37 0 0 chr21 15517806 15517833 -29389737 + (CA)n Simple_repeat Simple_repeat 2 28 0 606 339 59 30 chr21 15517833 15518120 -29389450 + HAL1 LINE L1 153 462 -2045 228 86 0 0 chr21 15518120 15518155 -29389415 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 589 244 83 39 chr21 15518169 15518585 -29388985 - MLT1D LTR MaLR -8 497 15 837 294 143 16 chr21 15518627 15519005 -29388565 + HAL1 LINE L1 492 917 -1590 2882 275 121 34 chr21 15519144 15520783 -29386787 + L1MEc LINE L1 19 1799 -777 535 253 114 81 chr21 15520803 15520946 -29386624 + L1ME1 LINE L1 2911 3048 -3167 1688 217 67 22 chr21 15520946 15521393 -29386177 + MLT1C LTR MaLR 1 467 0 535 253 114 81 chr21 15521393 15521600 -29385970 + L1ME1 LINE L1 3048 3247 -2968 7005 66 1 0 chr21 15521600 15522991 -29384579 + L1PA7 LINE L1 4761 6153 -1 535 253 114 81 chr21 15522991 15523185 -29384385 + L1ME1 LINE L1 3247 3474 -2741 * 2217 217 35 29 chr21 15523169 15523765 -29383805 + L1ME1 LINE L1 4593 5195 -1020 2278 126 8 30 chr21 15523765 15524137 -29383433 - THE1B LTR MaLR 0 364 1 2217 217 35 29 chr21 15524137 15524194 -29383376 + L1ME1 LINE L1 5195 5250 -965 1342 189 36 8 chr21 15524217 15524466 -29383104 - AluJo SINE Alu -56 256 1 2361 249 44 12 chr21 15524484 15525315 -29382255 + L1ME1 LINE L1 5245 6099 -136 326 276 63 29 chr21 15525306 15525545 -29382025 + L1MC4 LINE L1 6983 7229 -813 * 32 0 0 0 chr21 15526506 15526538 -29381032 + AT_rich Low_complexity Low_complexity 1 32 0 390 258 88 82 chr21 15526732 15526914 -29380656 - MER21B LTR ERV1 -125 738 556 971 276 128 49 chr21 15526927 15527318 -29380252 - MER21B LTR ERV1 -421 442 21 253 182 18 0 chr21 15527421 15527476 -29380094 + MER110A LTR ERV1 83 138 -330 582 287 101 22 chr21 15527589 15527857 -29379713 + MER110 LTR ERV1 195 483 -8 632 161 105 21 chr21 15527962 15528105 -29379465 + LTR40a LTR ERVL 365 519 0 353 305 6 34 chr21 15529592 15529769 -29377801 + GA-rich Low_complexity Low_complexity 3 174 0 1252 209 35 60 chr21 15529982 15530351 -29377219 + MLT1A1 LTR MaLR 4 363 -2 24 0 0 0 chr21 15530460 15530484 -29377086 + AT_rich Low_complexity Low_complexity 1 24 0 1699 121 103 18 chr21 15530563 15530836 -29376734 - MER1B DNA MER1_type 0 339 44 198 319 43 43 chr21 15531148 15531289 -29376281 + L2 LINE L2 2955 3095 -177 474 88 0 0 chr21 15531414 15531482 -29376088 + (TA)n Simple_repeat Simple_repeat 2 69 0 241 305 53 0 chr21 15532905 15533000 -29374570 + LTR16A LTR ERVL 284 383 -67 1094 149 20 5 chr21 15534467 15534662 -29372908 + L1PA16 LINE L1 3 200 -6663 * 11670 118 100 5 chr21 15534654 15536586 -29370984 + L1PA16 LINE L1 625 2740 -4123 * 12370 194 14 16 chr21 15536575 15540181 -29367389 + L1PA16 LINE L1 3310 6882 0 274 326 74 37 chr21 15540268 15540458 -29367112 + MIR SINE MIR 46 242 -20 23 0 0 0 chr21 15540657 15540680 -29366890 + AT_rich Low_complexity Low_complexity 1 23 0 1184 181 50 32 chr21 15541182 15541464 -29366106 - L1PB4 LINE L1 -1 6155 5869 10427 181 13 56 chr21 15542058 15542469 -29365101 + L1MA3 LINE L1 2938 3365 -2858 549 0 0 0 chr21 15542469 15542530 -29365040 + (TA)n Simple_repeat Simple_repeat 2 62 0 10427 181 13 56 chr21 15542530 15544782 -29362788 + L1MA3 LINE L1 3365 5480 -743 3624 114 15 0 chr21 15544782 15545323 -29362247 + L1PA14 LINE L1 5606 6159 -2 5548 114 2 8 chr21 15545335 15546179 -29361391 + L1MA3 LINE L1 5460 6298 -7 1392 205 52 74 chr21 15546204 15546636 -29360934 - MLT1C LTR MaLR -38 588 8 1821 216 14 116 chr21 15546642 15547193 -29360377 - MLT1C-int LTR MaLR 0 1371 877 2612 204 75 29 chr21 15547267 15548006 -29359564 - MLT1C-int LTR MaLR -477 894 4 280 133 0 22 chr21 15548008 15548053 -29359517 - MLT2C1 LTR ERVL 0 397 354 271 231 0 0 chr21 15548060 15548112 -29359458 - MLT2C1 LTR ERVL -228 169 118 1669 172 3 21 chr21 15548118 15548403 -29359167 + AluJo SINE Alu 2 281 -31 1965 120 15 19 chr21 15548453 15548777 -29358793 + L1MA8 LINE L1 5948 6270 -21 398 267 96 96 chr21 15549380 15549736 -29357834 - L1MC4a LINE L1 -1774 6034 5679 2174 106 10 10 chr21 15550369 15550672 -29356898 - AluSg SINE Alu -7 303 1 206 290 16 16 chr21 15551641 15551703 -29355867 + L2 LINE L2 3211 3272 0 212 304 14 0 chr21 15552219 15552288 -29355282 + L3b LINE CR1 1107 1176 -407 3122 81 2 0 chr21 15552290 15552711 -29354859 + L1P LINE L1 4172 4593 -1553 2099 104 3 7 chr21 15552711 15552998 -29354572 + AluSq SINE Alu 22 307 -6 1937 154 0 6 chr21 15553121 15553432 -29354138 + AluSx SINE Alu 3 311 -1 194 353 190 9 chr21 15553805 15554026 -29353544 + MIR SINE MIR 2 262 0 320 217 0 24 chr21 15554371 15554454 -29353116 + LTR33 LTR ERVL 441 521 0 1489 158 0 14 chr21 15554814 15555092 -29352478 + L1MA4 LINE L1 6020 6293 -7 480 312 93 25 chr21 15555696 15556020 -29351550 - L2 LINE L2 -1063 2251 1906 23 0 0 0 chr21 15556449 15556472 -29351098 + AT_rich Low_complexity Low_complexity 1 23 0 702 295 120 56 chr21 15557216 15557617 -29349953 + LTR16A LTR ERVL 19 457 0 668 270 35 6 chr21 15557617 15557791 -29349779 + HERV16 LTR ERVL 1 179 -4817 29368 110 15 32 chr21 15558008 15564476 -29343094 + L1PA7 LINE L1 1 6469 0 1336 212 13 55 chr21 15564678 15564989 -29342581 + AluJo SINE Alu 1 298 -4 2258 140 6 25 chr21 15565085 15565449 -29342121 + THE1B LTR MaLR 8 364 0 11471 108 2 0 chr21 15565449 15567025 -29340545 + THE1B-int LTR MaLR 1 1580 0 1984 147 46 26 chr21 15567025 15567372 -29340198 + THE1B LTR MaLR 1 354 -10 415 327 26 0 chr21 15567466 15567622 -29339948 + HERV16 LTR ERVL 1776 1935 -3061 180 217 72 72 chr21 15567718 15567787 -29339783 - L2 LINE L2 -65 3248 3180 374 168 147 77 chr21 15568116 15568259 -29339311 + Charlie5 DNA MER1_type 2427 2579 -33 183 406 0 0 chr21 15569949 15570018 -29337552 - MIR SINE MIR -166 96 28 294 264 60 0 chr21 15570580 15570681 -29336889 + L1ME LINE L1 5521 5579 -542 805 314 158 10 chr21 15570685 15571242 -29336328 + L2 LINE L2 2550 3171 -142 189 221 26 65 chr21 15571292 15571369 -29336201 + L2 LINE L2 3146 3219 -94 1086 141 0 6 chr21 15571371 15571541 -29336029 + AluSg/x SINE Alu 136 304 -6 274 277 0 0 chr21 15571544 15571609 -29335961 + L2 LINE L2 3226 3290 -23 377 298 62 69 chr21 15571817 15572122 -29335448 + HAL1 LINE L1 1141 1443 -1064 405 332 128 38 chr21 15572126 15572361 -29335209 + HAL1 LINE L1 1671 1926 -581 1745 72 0 79 chr21 15572442 15572720 -29334850 - L1P LINE L1 -1188 4958 4703 333 311 95 38 chr21 15573551 15573815 -29333755 + HAL1 LINE L1 2228 2506 -1 992 353 69 44 chr21 15573832 15573986 -29333584 - L2 LINE L2 -1300 2014 1865 1760 171 0 35 chr21 15573986 15574302 -29333268 + AluJb SINE Alu 1 305 -7 992 353 69 44 chr21 15574302 15575071 -29332499 - L2 LINE L2 -1449 1865 1068 194 278 111 14 chr21 15575204 15575276 -29332294 - L2 LINE L2 -2254 1060 982 364 343 88 67 chr21 15576390 15576901 -29330669 - L2 LINE L2 -834 2480 1959 26 50 0 0 chr21 15576986 15577026 -29330544 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr21 15578813 15578833 -29328737 + (A)n Simple_repeat Simple_repeat 1 20 0 1789 135 11 11 chr21 15579043 15579351 -29328219 - AluSx SINE Alu 0 310 3 538 231 15 0 chr21 15579780 15579914 -29327656 + L1PB4 LINE L1 6021 6156 0 482 205 232 33 chr21 15579985 15580136 -29327434 + MER5A DNA MER1_type 9 189 0 869 152 0 14 chr21 15584560 15584698 -29322872 + FAM SINE Alu 37 172 -13 23 0 0 0 chr21 15585012 15585035 -29322535 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 15587053 15587075 -29320495 + AT_rich Low_complexity Low_complexity 1 22 0 41333 54 6 21 chr21 15589145 15595390 -29312180 + L1PA4 LINE L1 2 6142 -13 490 239 77 76 chr21 15595416 15595626 -29311944 + L1M4b LINE L1 76 598 -6257 437 262 62 108 chr21 15595781 15596151 -29311419 + L1M4b LINE L1 836 1188 -5667 248 75 0 25 chr21 15596265 15596305 -29311265 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 298 242 33 76 chr21 15596307 15596518 -29311052 + L1M4b LINE L1 1240 1441 -5418 12054 199 41 15 chr21 15596521 15598929 -29308641 + L1M1 LINE L1 14 2482 -5083 2447 227 40 30 chr21 15598925 15599822 -29307748 + L1M1 LINE L1 3475 4409 -3156 * 426 187 0 0 chr21 15599822 15599897 -29307673 + THE1C LTR MaLR 301 375 0 7379 121 19 2 chr21 15599897 15600968 -29306602 + THE1C-int LTR MaLR 1 1089 -491 22101 156 15 7 chr21 15600971 15605097 -29302473 + L1P4 LINE L1 1363 5521 -647 699 262 47 14 chr21 15605089 15605303 -29302267 + L1M4b LINE L1 3409 3629 -3328 * 4514 93 9 9 chr21 15605305 15605952 -29301618 + L1PA10 LINE L1 5517 6163 -5 473 215 43 37 chr21 15606020 15606264 -29301306 + L1M4b LINE L1 1563 1906 -5054 928 169 45 0 chr21 15606322 15606500 -29301070 + MER2 DNA MER2_type 159 344 -1 2194 181 56 16 chr21 15606500 15606985 -29300585 + L1MA9 LINE L1 5785 6288 -24 1063 236 47 47 chr21 15607011 15607393 -29300177 + L1M4b LINE L1 4776 5157 -1800 1249 224 0 20 chr21 15607415 15607670 -29299900 + AluJo SINE Alu 1 250 -62 6010 199 15 8 chr21 15607685 15608888 -29298682 + L1PA13 LINE L1 1181 2403 -4394 2419 131 11 0 chr21 15608888 15609248 -29298322 + THE1B LTR MaLR 1 364 0 6010 199 15 8 chr21 15609248 15609340 -29298230 + L1PA13 LINE L1 2403 2493 -4304 9637 41 9 101 chr21 15609342 15610946 -29296624 - SVA Other Other 0 1386 19 239 95 191 0 chr21 15610946 15610988 -29296582 + LTR9B LTR ERV1 88 137 -507 11959 225 26 2 chr21 15611081 15612385 -29295185 + L1PA13 LINE L1 2480 3751 -3046 377 20 20 0 chr21 15612385 15612435 -29295135 + (CA)n Simple_repeat Simple_repeat 2 52 0 11959 225 26 2 chr21 15612435 15613894 -29293676 + L1PA13 LINE L1 3751 5309 -1488 777 179 230 17 chr21 15614770 15615005 -29292565 + LTR12 LTR ERV1 1 285 -429 238 230 58 23 chr21 15615006 15615093 -29292477 + LTR30 LTR ERV1 553 642 -80 677 164 0 0 chr21 15615095 15615199 -29292371 + LTR12 LTR ERV1 481 584 -130 54239 110 29 24 chr21 15615215 15623278 -29284292 + HERV9 LTR ERV1 54 8157 -242 6794 8 0 3 chr21 15623279 15624030 -29283540 - L1HS LINE L1 -1 6154 5406 1785 139 7 0 chr21 15624030 15624304 -29283266 + HERV9 LTR ERV1 8120 8395 -4 228 269 0 0 chr21 15624308 15624360 -29283210 + LTR30 LTR ERV1 1 52 -670 1504 148 302 3 chr21 15624360 15624691 -29282879 + LTR12 LTR ERV1 53 482 -232 1922 152 3 3 chr21 15625248 15625544 -29282026 + AluJo SINE Alu 1 296 -16 2240 185 27 6 chr21 15625629 15626115 -29281455 + L1PA13 LINE L1 5295 5790 -1007 31083 119 9 62 chr21 15626149 15626541 -29281029 + L1PA7 LINE L1 14 425 -5729 252 0 0 0 chr21 15626541 15626569 -29281001 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 31083 119 9 62 chr21 15626569 15629411 -29278159 + L1PA7 LINE L1 425 2727 -3427 1659 124 56 12 chr21 15629411 15629661 -29277909 + AluY SINE Alu 33 293 -18 31083 119 9 62 chr21 15629661 15632881 -29274689 + L1PA7 LINE L1 2727 6117 -37 10176 226 31 16 chr21 15632879 15635802 -29271768 + L1PA12 LINE L1 2626 5594 -1990 * 6342 180 43 7 chr21 15635810 15637010 -29270560 + L1MA3 LINE L1 12 2023 -5542 * 10539 188 22 65 chr21 15637004 15637645 -29269925 + L1MA3 LINE L1 2693 3360 -4364 4251 54 0 2 chr21 15637645 15638143 -29269427 + L1PA7 LINE L1 5651 6147 -7 10539 188 22 65 chr21 15638143 15639162 -29268408 + L1MA3 LINE L1 3360 4422 -3302 1353 180 83 55 chr21 15639162 15639451 -29268119 + AluJb SINE Alu 4 300 -12 10539 188 22 65 chr21 15639451 15639584 -29267986 + L1MA3 LINE L1 4422 4559 -3165 1581 180 32 4 chr21 15639584 15639862 -29267708 + AluJb SINE Alu 10 295 -17 10539 188 22 65 chr21 15639862 15641309 -29266261 + L1MA3 LINE L1 4559 6067 -1657 1439 198 0 34 chr21 15641309 15641572 -29265998 + AluJb SINE Alu 4 257 -55 10539 188 22 65 chr21 15641572 15641787 -29265783 + L1MA3 LINE L1 6067 6290 -1434 2084 144 3 0 chr21 15641787 15642085 -29265485 + AluSx SINE Alu 1 299 -13 10539 188 22 65 chr21 15642085 15643808 -29263762 + L1MA3 LINE L1 6290 7724 0 537 185 140 0 chr21 15643789 15643901 -29263669 + L1 LINE L1 4133 4275 -1871 * 405 0 0 0 chr21 15643901 15643946 -29263624 + (CA)n Simple_repeat Simple_repeat 2 46 0 537 185 140 0 chr21 15643946 15643990 -29263580 + L1 LINE L1 4275 4311 -1835 1948 237 26 22 chr21 15644246 15644710 -29262860 - MLT1C LTR MaLR 0 467 2 457 342 49 26 chr21 15644754 15645058 -29262512 - LTR16C LTR ERVL -10 481 171 43134 37 22 2 chr21 15645321 15651372 -29256198 + L1PA2 LINE L1 1 6172 0 1405 158 56 8 chr21 15651378 15651644 -29255926 + L1MB3 LINE L1 5889 6167 -16 269 105 23 75 chr21 15651651 15651784 -29255786 + (TA)n Simple_repeat Simple_repeat 1 126 0 43 0 0 0 chr21 15651799 15651842 -29255728 + AT_rich Low_complexity Low_complexity 1 43 0 414 283 257 0 chr21 15653043 15653230 -29254340 + Charlie8 DNA MER1_type 31 265 -2152 198 330 33 11 chr21 15653314 15653405 -29254165 - MIR SINE MIR -64 144 52 27 29 0 0 chr21 15653585 15653619 -29253951 + AT_rich Low_complexity Low_complexity 1 34 0 2368 103 0 3 chr21 15653693 15654003 -29253567 - AluSq SINE Alu -4 309 1 1722 140 30 0 chr21 15654234 15654394 -29253176 - L1MA4 LINE L1 -7 6293 6139 1900 107 7 37 chr21 15654394 15654714 -29252856 + AluSx SINE Alu 5 312 0 1722 140 30 0 chr21 15654714 15654853 -29252717 - L1MA4 LINE L1 -161 6139 5985 23 0 0 0 chr21 15655277 15655300 -29252270 + AT_rich Low_complexity Low_complexity 1 23 0 334 303 60 53 chr21 15655345 15655626 -29251944 + HAL1b LINE L1 178 460 -888 225 0 0 0 chr21 15655695 15655720 -29251850 + (TG)n Simple_repeat Simple_repeat 1 25 0 351 307 66 36 chr21 15656064 15656230 -29251340 - HAL1 LINE L1 -84 2423 2253 1129 107 0 6 chr21 15656686 15656845 -29250725 - L1PA13 LINE L1 -6 6157 6000 304 351 117 0 chr21 15656945 15657150 -29250420 - HAL1 LINE L1 -629 1878 1650 302 308 58 23 chr21 15657155 15657327 -29250243 - HAL1 LINE L1 -936 1571 1394 3256 119 22 2 chr21 15657327 15657771 -29249799 - MLT2A2 LTR ERVL 0 453 1 20397 77 5 2 chr21 15657771 15660356 -29247214 - HERVL-A2 LTR ERVL 0 5654 3063 3353 121 13 0 chr21 15660370 15660817 -29246753 - MLT2A2 LTR ERVL 0 453 1 2843 101 0 0 chr21 15661380 15661735 -29245835 + THE1A LTR MaLR 1 355 0 12486 102 2 1 chr21 15661735 15663312 -29244258 + THE1A-int LTR MaLR 1 1580 0 2628 81 60 0 chr21 15663312 15663647 -29243923 + THE1A LTR MaLR 1 355 0 658 209 57 0 chr21 15663771 15663929 -29243641 - L1MC3 LINE L1 0 7785 7619 1896 146 143 126 chr21 15663939 15664223 -29243347 - L1MC3 LINE L1 -322 7463 7098 301 265 0 0 chr21 15664223 15664291 -29243279 - MLT1F1 LTR MaLR -456 111 44 1896 146 143 126 chr21 15664291 15664486 -29243084 - L1MC3 LINE L1 -687 7098 6908 5520 167 26 14 chr21 15665695 15666334 -29241236 - L1PB4 LINE L1 -3 6153 5523 1730 171 3 17 chr21 15666334 15666627 -29240943 - AluJo SINE Alu -21 291 3 5520 167 26 14 chr21 15666627 15667843 -29239727 - L1PB4 LINE L1 -633 5523 4276 2121 243 88 17 chr21 15668077 15668654 -29238916 - MLT1E2 LTR MaLR -8 618 1 5996 144 25 13 chr21 15669819 15670331 -29237239 + L1PBa LINE L1 6 511 -6352 1733 91 56 4 chr21 15670331 15670583 -29236987 + AluY SINE Alu 36 300 -11 5996 144 25 13 chr21 15670583 15672195 -29235375 + L1PBa LINE L1 511 2359 -4504 265 231 0 0 chr21 15672195 15672247 -29235323 + LTR30 LTR ERV1 1 52 -670 1568 89 4 57 chr21 15672247 15672493 -29235077 + LTR12 LTR ERV1 53 285 -429 285 180 58 79 chr21 15672493 15672583 -29234987 + LTR30 LTR ERV1 478 642 -75 749 110 0 0 chr21 15672586 15672686 -29234884 + LTR12 LTR ERV1 615 714 0 4822 148 49 3 chr21 15672686 15674068 -29233502 + L1PBa LINE L1 2362 3803 -3059 423 119 34 0 chr21 15674068 15674127 -29233443 - AluS SINE Alu -231 81 21 292 211 35 0 chr21 15674158 15674215 -29233355 - MLT1F1 LTR MaLR -332 235 177 21 57 0 0 chr21 15674246 15674281 -29233289 + AT_rich Low_complexity Low_complexity 1 35 0 451 300 86 64 chr21 15674411 15674678 -29232892 - LTR67 LTR ERVL -256 301 29 524 312 91 22 chr21 15675782 15676058 -29231512 - ERVL LTR ERVL -931 4833 4539 1618 159 81 4 chr21 15676060 15676331 -29231239 + AluJb SINE Alu 2 293 -19 1774 213 47 63 chr21 15676338 15676366 -29231204 - MLT2B1 LTR ERVL -20 500 473 294 73 0 0 chr21 15676366 15676407 -29231163 + (TG)n Simple_repeat Simple_repeat 2 42 0 1774 213 47 63 chr21 15676407 15676886 -29230684 - MLT2B1 LTR ERVL -47 473 1 1845 213 67 77 chr21 15676931 15677589 -29229981 + MLT1E2 LTR MaLR 1 626 0 647 327 70 43 chr21 15677589 15677951 -29229619 - ERVL LTR ERVL -1278 4486 4102 2881 115 26 28 chr21 15677951 15678378 -29229192 + MSTA LTR MaLR 3 428 0 647 327 70 43 chr21 15678378 15678574 -29228996 - ERVL LTR ERVL -1662 4102 3913 2151 85 61 0 chr21 15678764 15679057 -29228513 - AluSp SINE Alu -2 311 1 464 314 59 0 chr21 15679216 15679385 -29228185 - ERVL LTR ERVL -2256 3508 3330 783 149 12 38 chr21 15679399 15679661 -29227909 + AluJ SINE Alu 1 312 0 2244 97 3 3 chr21 15679663 15679963 -29227607 + AluY SINE Alu 3 302 -9 292 277 132 57 chr21 15680113 15680272 -29227298 - ERVL LTR ERVL -2549 3105 2935 274 236 69 0 chr21 15680556 15680628 -29226942 + U6 snRNA snRNA 31 107 0 269 337 0 22 chr21 15680742 15680831 -29226739 + MIR SINE MIR 20 106 -156 1503 160 12 20 chr21 15680836 15681080 -29226490 + MLT1D LTR MaLR 1 242 -263 560 180 137 43 chr21 15681076 15681215 -29226355 + MLT1D LTR MaLR 354 505 0 * 1656 158 0 8 chr21 15681319 15681584 -29225986 + AluJo SINE Alu 22 284 -28 22 0 0 0 chr21 15681584 15681606 -29225964 + AT_rich Low_complexity Low_complexity 1 22 0 373 292 7 36 chr21 15681728 15681865 -29225705 + MIR SINE MIR 124 256 -6 2239 92 7 0 chr21 15681865 15682196 -29225374 + AluSp SINE Alu 1 333 0 34 24 0 0 chr21 15682788 15682829 -29224741 + AT_rich Low_complexity Low_complexity 1 41 0 2662 132 0 3 chr21 15683052 15683417 -29224153 - THE1B LTR MaLR 0 364 1 2070 188 28 19 chr21 15683458 15683820 -29223750 + MLT1A1 LTR MaLR 1 365 0 275 261 15 100 chr21 15683901 15683987 -29223583 + MER94 DNA DNA 11 84 -50 2259 103 0 7 chr21 15683987 15684288 -29223282 + AluY SINE Alu 1 299 -12 275 261 15 100 chr21 15684288 15684331 -29223239 + MER94 DNA DNA 84 129 -5 182 245 41 20 chr21 15684624 15684673 -29222897 - L2 LINE L2 0 3272 3223 1867 142 3 39 chr21 15684845 15685154 -29222416 + AluSp SINE Alu 1 298 -15 184 380 36 0 chr21 15685358 15685495 -29222075 - L2 LINE L2 -501 2813 2672 339 256 137 26 chr21 15685562 15685679 -29221891 - MER5B DNA MER1_type 0 178 49 219 242 0 0 chr21 15685685 15685747 -29221823 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 874 219 127 0 chr21 15686614 15686819 -29220751 - MIR SINE MIR -21 241 11 2024 165 105 33 chr21 15686886 15687055 -29220515 + MSTA LTR MaLR 1 156 -272 1841 131 11 0 chr21 15687055 15687330 -29220240 + AluSx SINE Alu 16 293 -19 2024 165 105 33 chr21 15687330 15687559 -29220011 + MSTA LTR MaLR 156 428 0 252 184 0 0 chr21 15687746 15687795 -29219775 + (TA)n Simple_repeat Simple_repeat 1 49 0 229 149 0 0 chr21 15687798 15687845 -29219725 + LTR66 LTR ERVL 398 444 -166 1696 154 19 0 chr21 15687901 15688167 -29219403 - AluJo SINE Alu -41 271 1 709 237 17 35 chr21 15688352 15688525 -29219045 - MER45A DNA AcHobo -8 170 1 998 189 53 98 chr21 15688566 15688860 -29218710 + MER34C LTR ERV1 2 229 -313 1991 171 64 9 chr21 15688860 15689206 -29218364 + MLT1A1 LTR MaLR 1 365 0 998 189 53 98 chr21 15689206 15689492 -29218078 + MER34C LTR ERV1 229 526 -16 222 37 0 0 chr21 15690660 15690687 -29216883 + (GAA)n Simple_repeat Simple_repeat 2 28 0 189 244 41 114 chr21 15690743 15690866 -29216704 + MIR SINE MIR 85 198 -64 346 291 0 0 chr21 15691207 15691286 -29216284 - MER45B DNA AcHobo -923 117 39 19195 79 7 1 chr21 15691287 15693869 -29213701 + L1PA6 LINE L1 1380 3976 -2170 43580 35 22 1 chr21 15693877 15699769 -29207801 + L1PA2 LINE L1 1 6018 -137 351 0 0 0 chr21 15699772 15699811 -29207759 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 11603 65 2 2 chr21 15699811 15701997 -29205573 + L1PA6 LINE L1 3965 6154 0 2175 112 0 3 chr21 15702058 15702353 -29205217 - AluSx SINE Alu -18 294 1 374 237 32 32 chr21 15702637 15702730 -29204840 - MER5A DNA MER1_type -79 110 18 3939 98 2 0 chr21 15702825 15703333 -29204237 - L1PB1 LINE L1 0 6151 5643 346 272 61 18 chr21 15703407 15703521 -29204049 + MLT1K LTR MaLR 459 577 -11 2108 253 66 9 chr21 15705456 15705641 -29201929 - MER119 DNA MER1_type -2 581 408 1755 144 17 34 chr21 15705641 15705939 -29201631 - AluJo SINE Alu -19 293 1 2108 253 66 9 chr21 15705939 15705961 -29201609 - MER119 DNA MER1_type -175 408 389 2805 221 5 19 chr21 15705961 15706536 -29201034 - MLT1F1 LTR MaLR 0 567 1 2108 253 66 9 chr21 15706536 15706873 -29200697 - MER119 DNA MER1_type -194 389 5 30 45 0 0 chr21 15707020 15707064 -29200506 + AT_rich Low_complexity Low_complexity 1 44 0 403 244 76 122 chr21 15707393 15707803 -29199767 + HAL1 LINE L1 28 418 -2089 374 308 86 40 chr21 15707891 15708089 -29199481 + HAL1 LINE L1 574 780 -1727 2578 52 7 0 chr21 15708105 15708412 -29199158 - AluY SINE Alu -2 309 1 666 208 27 123 chr21 15708463 15708723 -29198847 - L1MC4 LINE L1 -2 8040 7806 368 315 70 51 chr21 15708725 15708890 -29198680 - L1MC4 LINE L1 -313 7729 7554 2188 99 0 7 chr21 15708890 15709183 -29198387 + AluSc SINE Alu 1 291 -18 368 315 70 51 chr21 15709183 15709331 -29198239 - L1MC4 LINE L1 -488 7554 7410 * 646 249 88 80 chr21 15709330 15709346 -29198224 + HAL1 LINE L1 2015 2029 -478 405 0 0 0 chr21 15709346 15709391 -29198179 + (CA)n Simple_repeat Simple_repeat 2 46 0 646 249 88 80 chr21 15709391 15709464 -29198106 + HAL1 LINE L1 2029 2100 -407 2467 253 6 12 chr21 15709464 15709981 -29197589 - LTR40a LTR ERVL -4 515 2 646 249 88 80 chr21 15709981 15710379 -29197191 + HAL1 LINE L1 2100 2507 0 861 163 8 0 chr21 15710386 15710515 -29197055 + FLAM_A SINE Alu 1 130 -3 1935 159 0 13 chr21 15710520 15710654 -29196916 + AluJo SINE Alu 3 137 -175 2111 107 3 58 chr21 15710654 15710982 -29196588 + AluSx SINE Alu 1 310 -2 1935 159 0 13 chr21 15710982 15711161 -29196409 + AluJo SINE Alu 137 312 0 309 308 161 41 chr21 15711811 15712074 -29195496 - L1ME4a LINE L1 -84 6037 5710 2121 110 23 19 chr21 15712074 15712384 -29195186 - AluSx SINE Alu -1 311 1 309 308 161 41 chr21 15712384 15712510 -29195060 - L1ME4a LINE L1 -411 5710 5601 277 136 0 23 chr21 15713315 15713391 -29194179 - AluSx SINE Alu 0 316 242 1218 130 0 11 chr21 15713391 15713568 -29194002 - AluSx SINE Alu -137 175 1 1906 143 21 7 chr21 15713594 15713881 -29193689 + AluSx SINE Alu 14 304 -8 311 230 204 21 chr21 15713951 15714142 -29193428 + HAL1 LINE L1 829 1054 -1453 1862 276 71 58 chr21 15714301 15715387 -29192183 + HAL1 LINE L1 1271 2373 -134 772 226 0 8 chr21 15715387 15715520 -29192050 + FLAM_A SINE Alu 1 132 -1 1862 276 71 58 chr21 15715520 15715579 -29191991 + HAL1 LINE L1 2373 2430 -77 744 173 24 4 chr21 15715579 15715828 -29191742 + GA-rich Low_complexity Low_complexity 1 254 0 342 267 138 9 chr21 15715833 15715949 -29191621 + HAL1 LINE L1 2377 2507 0 215 200 0 0 chr21 15715970 15716005 -29191565 + polypurine Low_complexity Low_complexity 3 37 0 535 154 26 0 chr21 15716822 15716900 -29190670 - AluJo SINE Alu -14 298 219 * 850 188 7 0 chr21 15716896 15717034 -29190536 - AluJo SINE Alu -172 140 2 2114 116 28 0 chr21 15717041 15717325 -29190245 - AluSx SINE Alu -20 292 1 252 295 71 89 chr21 15717483 15717595 -29189975 + MIR SINE MIR 35 144 -64 1644 133 38 44 chr21 15717609 15718045 -29189525 + AluSq SINE Alu 1 434 0 185 272 110 37 chr21 15718624 15718760 -29188810 - MIR3 SINE MIR -5 203 58 2181 128 0 3 chr21 15719054 15719351 -29188219 + AluSx SINE Alu 1 296 -16 224 291 179 28 chr21 15720142 15720321 -29187249 + MIR SINE MIR 45 250 -12 378 250 176 34 chr21 15720355 15720531 -29187039 + MIR SINE MIR 53 253 -9 323 316 74 62 chr21 15721499 15721838 -29185732 - LTR16C LTR ERVL -31 460 118 391 257 64 50 chr21 15721969 15722109 -29185461 + MER21A LTR ERV1 415 556 -375 1406 174 23 72 chr21 15722114 15722256 -29185314 + AluJo SINE Alu 1 122 -190 2339 81 3 0 chr21 15722256 15722551 -29185019 + AluSp SINE Alu 2 297 -16 1406 174 23 72 chr21 15722551 15722712 -29184858 + AluJo SINE Alu 122 289 -23 23 78 0 0 chr21 15722957 15723008 -29184562 + AT_rich Low_complexity Low_complexity 1 51 0 1031 252 123 39 chr21 15723826 15723926 -29183644 - MLT1H LTR MaLR 0 549 459 183 80 0 0 chr21 15723926 15723951 -29183619 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 1031 252 123 39 chr21 15723951 15724225 -29183345 - MLT1H LTR MaLR -90 459 132 2181 132 54 17 chr21 15724225 15724574 -29182996 - THE1B LTR MaLR -2 362 1 1031 252 123 39 chr21 15724574 15724630 -29182940 - MLT1H LTR MaLR -417 132 82 2310 139 39 28 chr21 15724725 15725085 -29182485 + THE1B LTR MaLR 1 364 0 2296 98 10 0 chr21 15725129 15725435 -29182135 + AluSp SINE Alu 1 309 -4 302 273 36 9 chr21 15725766 15725876 -29181694 - MIR SINE MIR -26 236 124 1378 241 76 18 chr21 15725998 15726446 -29181124 + L1ME3A LINE L1 5474 5947 -223 482 270 22 38 chr21 15726550 15726735 -29180835 + L1ME3A LINE L1 5988 6169 -1 1577 286 36 5 chr21 15726848 15727296 -29180274 - LTR16B LTR ERVL 0 464 3 2694 114 5 8 chr21 15727596 15727972 -29179598 - THE1C LTR MaLR 0 375 1 1810 131 30 49 chr21 15728137 15728503 -29179067 + Charlie3 DNA MER1_type 1 2702 -8 1896 158 20 0 chr21 15729061 15729365 -29178205 - AluSx SINE Alu -2 310 1 257 337 84 20 chr21 15730487 15730689 -29176881 - L2 LINE L2 -1764 1550 1336 2207 122 0 19 chr21 15730753 15731072 -29176498 + AluSq SINE Alu 1 313 0 421 277 43 14 chr21 15731996 15732137 -29175433 - MLT1L LTR MaLR -293 322 178 202 368 123 5 chr21 15732872 15733092 -29174478 + L2 LINE L2 2854 3099 -173 2306 95 3 0 chr21 15733481 15733776 -29173794 + AluSx SINE Alu 1 296 -16 292 286 0 16 chr21 15734548 15734611 -29172959 + L2 LINE L2 3206 3267 -5 277 231 269 8 chr21 15734615 15734749 -29172821 - MIR SINE MIR -47 215 47 1937 137 3 47 chr21 15735005 15735327 -29172243 - AluJb SINE Alu -4 308 1 1059 107 7 7 chr21 15735486 15735636 -29171934 + AluSq/x SINE Alu 1 150 -162 2423 86 3 0 chr21 15736112 15736415 -29171155 - AluSg SINE Alu -6 304 1 518 265 130 88 chr21 15737921 15738306 -29169264 - LTR67 LTR ERVL -52 505 105 1944 202 39 106 chr21 15738545 15738641 -29168929 + MER119 DNA MER1_type 3 104 -479 2115 127 3 13 chr21 15738641 15738956 -29168614 + AluSx SINE Alu 1 312 0 1944 202 39 106 chr21 15738956 15739482 -29168088 + MER119 DNA MER1_type 104 583 0 21 0 0 0 chr21 15739613 15739634 -29167936 + AT_rich Low_complexity Low_complexity 1 21 0 1900 117 95 0 chr21 15739812 15740085 -29167485 + AluSx SINE Alu 1 299 -13 1902 175 3 0 chr21 15740463 15740772 -29166798 - AluJb SINE Alu -2 310 1 1097 233 67 74 chr21 15740889 15741253 -29166317 + MLT1E LTR MaLR 193 555 -38 2066 107 0 75 chr21 15741253 15741571 -29165999 - AluSx SINE Alu -16 296 3 1097 233 67 74 chr21 15741571 15741610 -29165960 + MLT1E LTR MaLR 555 593 0 1188 218 66 51 chr21 15741610 15742019 -29165551 + L1MC4 LINE L1 7617 8031 -11 2646 128 0 31 chr21 15742796 15743210 -29164360 + MSTA LTR MaLR 1 401 -27 2285 104 3 0 chr21 15743221 15743530 -29164040 - AluSx SINE Alu -2 310 1 193 306 28 0 chr21 15743570 15743642 -29163928 + L2 LINE L2 2573 2646 -668 659 146 0 0 chr21 15744182 15744271 -29163299 - AluJ/FLAM SINE Alu -223 89 1 1571 236 136 40 chr21 15744306 15744462 -29163108 - L1MC4 LINE L1 0 8042 7902 2057 127 0 7 chr21 15744462 15744779 -29162791 + AluSx SINE Alu 1 315 0 1571 236 136 40 chr21 15744779 15745241 -29162329 - L1MC4 LINE L1 -140 7902 7364 926 207 246 18 chr21 15745293 15745421 -29162149 + L1MD3 LINE L1 5698 5796 -2199 2011 119 3 20 chr21 15745421 15745715 -29161855 + AluSx SINE Alu 1 289 -23 926 207 246 18 chr21 15745715 15745924 -29161646 + L1MD3 LINE L1 5796 6112 -1883 236 160 0 40 chr21 15745925 15745975 -29161595 + Alu SINE Alu 122 169 -134 1776 153 19 32 chr21 15746037 15746095 -29161475 - AluSx SINE Alu -2 310 253 207 88 0 0 chr21 15746095 15746129 -29161441 + (GAGTG)n Simple_repeat Simple_repeat 3 36 0 1776 153 19 32 chr21 15746129 15746384 -29161186 - AluSx SINE Alu -59 253 1 1720 182 23 10 chr21 15746411 15746470 -29161100 - AluJb SINE Alu 0 312 255 270 106 0 0 chr21 15746470 15746517 -29161053 + (GAGTG)n Simple_repeat Simple_repeat 1 47 0 1720 182 23 10 chr21 15746517 15746765 -29160805 - AluJb SINE Alu -57 255 1 24 0 0 0 chr21 15746781 15746805 -29160765 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 15747332 15747363 -29160207 + AT_rich Low_complexity Low_complexity 1 31 0 2147 83 7 20 chr21 15747363 15747664 -29159906 + AluSc SINE Alu 1 297 -12 193 333 59 0 chr21 15747827 15747929 -29159641 - MIR SINE MIR -6 256 149 655 276 76 70 chr21 15748113 15748457 -29159113 + LTR16C LTR ERVL 146 491 0 2249 85 3 0 chr21 15748504 15748806 -29158764 + AluSq SINE Alu 1 303 0 769 274 73 29 chr21 15748811 15749085 -29158485 + MLT1J LTR MaLR 53 338 -173 1309 94 6 6 chr21 15749158 15749338 -29158232 - AluSg/x SINE Alu -3 309 130 560 152 43 0 chr21 15749393 15749485 -29158085 + U6 snRNA snRNA 12 107 0 1749 99 8 4 chr21 15749485 15749737 -29157833 + L1MA2 LINE L1 6048 6300 -4 183 303 20 61 chr21 15749775 15749874 -29157696 - MIR SINE MIR -150 112 18 698 189 15 15 chr21 15750042 15750241 -29157329 + FLAM_C SINE Alu 1 199 0 408 91 0 15 chr21 15750175 15750417 -29157153 + (GAAA)n Simple_repeat Simple_repeat 3 243 0 912 161 7 0 chr21 15750418 15750561 -29157009 + FRAM SINE Alu 1 140 -36 459 92 0 0 chr21 15750568 15750633 -29156937 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1991 117 38 127 chr21 15750740 15751117 -29156453 + MLT1B LTR MaLR 1 337 -53 2367 68 14 3 chr21 15751117 15751411 -29156159 + AluSp SINE Alu 2 298 -15 1991 117 38 127 chr21 15751411 15751459 -29156111 + MLT1B LTR MaLR 337 388 -2 23 0 0 0 chr21 15752380 15752403 -29155167 + AT_rich Low_complexity Low_complexity 1 23 0 2480 67 0 10 chr21 15752461 15752775 -29154795 + AluY SINE Alu 1 311 0 2331 102 0 7 chr21 15752808 15753113 -29154457 - AluSq SINE Alu -10 303 1 1389 179 145 36 chr21 15753455 15753902 -29153668 + LTR54B LTR ERV1 2 497 -1 462 219 0 0 chr21 15754015 15754120 -29153450 + GA-rich Low_complexity Low_complexity 1 105 0 2033 122 0 0 chr21 15755207 15755494 -29152076 + AluSq SINE Alu 1 287 -26 558 226 157 5 chr21 15756238 15756442 -29151128 + MER112 DNA MER1_type 19 253 -7 892 126 7 44 chr21 15757056 15757191 -29150379 + FLAM_C SINE Alu 1 130 -3 1141 199 6 65 chr21 15757883 15757904 -29149666 - MER33 DNA MER1_type -2269 316 295 2258 108 0 3 chr21 15757904 15758200 -29149370 + AluSx SINE Alu 1 295 -17 1141 199 6 65 chr21 15758200 15758514 -29149056 - MER33 DNA MER1_type -2290 295 1 361 259 42 93 chr21 15758828 15759021 -29148549 - MIR SINE MIR -49 213 31 1982 216 157 7 chr21 15760798 15761358 -29146212 - LTR48B LTR ERV1 0 644 1 447 19 0 0 chr21 15761804 15761856 -29145714 + (TG)n Simple_repeat Simple_repeat 1 52 0 1761 159 0 61 chr21 15761884 15762119 -29145451 - AluJo SINE Alu -1 311 100 2360 77 3 10 chr21 15762119 15762418 -29145152 - AluSg1 SINE Alu -12 297 1 667 122 0 0 chr21 15762419 15762509 -29145061 - AluJ/FLAM SINE Alu -218 94 5 972 148 94 20 chr21 15762535 15762738 -29144832 - L1PA16 LINE L1 -2 6164 5947 2553 44 0 0 chr21 15763029 15763323 -29144247 + AluY SINE Alu 1 294 -17 389 282 50 82 chr21 15763459 15763719 -29143851 - L1ME4a LINE L1 -43 6078 5833 1875 142 7 3 chr21 15763719 15764027 -29143543 - AluJb SINE Alu 0 310 2 389 282 50 82 chr21 15764027 15764166 -29143404 - L1ME4a LINE L1 -288 5833 5691 2087 140 3 0 chr21 15764168 15764468 -29143102 + AluSx SINE Alu 1 301 -11 257 194 0 28 chr21 15765054 15765126 -29142444 + T-rich Low_complexity Low_complexity 3 72 0 716 236 0 0 chr21 15765129 15765252 -29142318 - FLAM_A SINE Alu -10 123 1 2368 80 3 16 chr21 15765980 15766292 -29141278 - AluY SINE Alu -2 309 2 822 142 55 8 chr21 15766326 15766453 -29141117 + FLAM_C SINE Alu 1 133 0 30 27 0 0 chr21 15766453 15766490 -29141080 + AT_rich Low_complexity Low_complexity 1 37 0 3026 158 34 14 chr21 15767317 15767818 -29139752 - MER41E LTR ERV1 -1 511 1 2046 106 26 29 chr21 15768413 15768724 -29138846 + AluSx SINE Alu 1 310 -2 832 146 0 8 chr21 15768736 15768859 -29138711 + FLAM_C SINE Alu 3 124 -19 264 185 0 0 chr21 15769027 15769081 -29138489 + (TG)n Simple_repeat Simple_repeat 1 54 0 795 161 0 0 chr21 15769081 15769199 -29138371 - FLAM_C SINE Alu -23 120 3 277 218 0 18 chr21 15769204 15769259 -29138311 + MER5B DNA MER1_type 120 173 -5 372 189 91 0 chr21 15770074 15770155 -29137415 + FLAM SINE Alu 52 110 -23 2169 119 0 0 chr21 15770160 15770453 -29137117 - AluSx SINE Alu -16 296 4 207 0 0 0 chr21 15770482 15770505 -29137065 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 247 245 19 0 chr21 15770517 15770570 -29137000 + U7 snRNA snRNA 9 62 -1 256 170 64 0 chr21 15770852 15770899 -29136671 - AluJo SINE Alu -168 134 85 342 0 0 0 chr21 15771360 15771398 -29136172 + (T)n Simple_repeat Simple_repeat 1 38 0 2690 42 0 0 chr21 15771566 15771872 -29135698 + AluY SINE Alu 1 306 -5 493 172 0 11 chr21 15772510 15772597 -29134973 - AluSp/q SINE Alu -13 300 215 607 40 0 0 chr21 15772623 15772697 -29134873 - tRNA-Gly-GGC tRNA tRNA 0 74 1 1786 136 0 42 chr21 15772811 15773121 -29134449 + AluJo SINE Alu 1 297 -15 27 49 0 0 chr21 15773263 15773304 -29134266 + AT_rich Low_complexity Low_complexity 1 41 0 335 353 77 24 chr21 15773537 15773744 -29133826 + L3 LINE CR1 1060 1277 -300 1480 113 0 0 chr21 15773775 15773978 -29133592 + AluSg/x SINE Alu 104 306 -4 2482 57 3 3 chr21 15774071 15774370 -29133200 + AluSp SINE Alu 1 299 -14 222 253 84 24 chr21 15774509 15774592 -29132978 - L2 LINE L2 -427 2887 2800 38 51 0 0 chr21 15774676 15774735 -29132835 + AT_rich Low_complexity Low_complexity 1 59 0 2066 91 32 7 chr21 15774800 15775085 -29132485 - AluSq SINE Alu -19 294 3 2007 102 92 0 chr21 15775085 15775369 -29132201 - AluSx SINE Alu -2 310 1 403 237 0 10 chr21 15775383 15775480 -29132090 + MIR SINE MIR 100 195 -67 343 176 176 69 chr21 15775485 15775517 -29132053 + L2 LINE L2 3201 3228 -85 887 176 136 40 chr21 15775517 15775716 -29131854 - MER20 DNA MER1_type -1 218 1 343 176 176 69 chr21 15775716 15775785 -29131785 + L2 LINE L2 3228 3313 0 295 283 28 28 chr21 15775981 15776087 -29131483 - L1P4 LINE L1 -362 5799 5694 1451 175 14 35 chr21 15776162 15776447 -29131123 - MLT2D LTR ERVL 0 414 136 1938 149 0 3 chr21 15776447 15776736 -29130834 + AluJb SINE Alu 1 288 -24 1027 139 6 30 chr21 15776759 15776925 -29130645 + AluSg/x SINE Alu 120 281 -29 1648 139 85 36 chr21 15776948 15777279 -29130291 - THE1C LTR MaLR -28 347 1 598 230 7 15 chr21 15777306 15777441 -29130129 - MLT2D LTR ERVL -270 144 11 1937 157 3 3 chr21 15777441 15777740 -29129830 + AluJb SINE Alu 1 299 -13 1239 174 126 33 chr21 15779502 15779772 -29127798 + AluJo SINE Alu 6 300 -12 2011 117 11 11 chr21 15779981 15780309 -29127261 - AluSx SINE Alu 0 328 1 2503 73 0 0 chr21 15780687 15780989 -29126581 + AluY SINE Alu 1 302 -9 2414 96 0 3 chr21 15782031 15782344 -29125226 - AluSx SINE Alu 0 312 1 32 43 0 0 chr21 15782372 15782418 -29125152 + AT_rich Low_complexity Low_complexity 1 46 0 187 281 37 37 chr21 15782547 15782629 -29124941 - L2 LINE L2 -314 2999 2918 2322 84 3 19 chr21 15782834 15783143 -29124427 + AluSg SINE Alu 1 304 -6 2167 123 3 0 chr21 15783185 15783487 -29124083 + AluSc SINE Alu 1 303 -6 195 42 0 0 chr21 15783536 15783560 -29124010 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2228 114 3 0 chr21 15783562 15783859 -29123711 - AluSx SINE Alu -14 298 1 237 182 0 0 chr21 15784053 15784097 -29123473 - L1MC4 LINE L1 -1338 6704 6661 1249 193 3 78 chr21 15784115 15784437 -29123133 - AluJo SINE Alu -9 303 6 2240 89 0 7 chr21 15784597 15784916 -29122654 - AluSg SINE Alu 0 319 3 627 212 79 18 chr21 15784917 15785082 -29122488 + MER5B DNA MER1_type 4 178 0 28 48 0 0 chr21 15785128 15785170 -29122400 + AT_rich Low_complexity Low_complexity 1 42 0 287 232 0 0 chr21 15785922 15785978 -29121592 - MIR3 SINE MIR -21 187 132 1334 152 134 32 chr21 15786198 15786362 -29121208 - AluJo SINE Alu 0 312 166 2007 155 0 0 chr21 15786362 15786665 -29120905 - AluJb SINE Alu -9 303 1 1334 152 134 32 chr21 15786665 15786783 -29120787 - AluJo SINE Alu -146 166 1 2428 43 17 0 chr21 15787039 15787338 -29120232 - AluY SINE Alu -2 309 6 1083 124 47 42 chr21 15787383 15787576 -29119994 + L1MB3 LINE L1 5975 6168 -15 225 0 0 0 chr21 15787576 15787601 -29119969 + (TG)n Simple_repeat Simple_repeat 2 26 0 1053 187 5 48 chr21 15787601 15787810 -29119760 - AluJo SINE Alu -21 291 92 2111 144 0 3 chr21 15787892 15788205 -29119365 - AluJo SINE Alu 0 312 1 2143 107 19 7 chr21 15788244 15788553 -29119017 - AluSp SINE Alu 0 313 1 2212 105 7 0 chr21 15788580 15788875 -29118695 + AluSx SINE Alu 1 297 -15 2145 102 0 11 chr21 15789122 15789436 -29118134 - AluSx SINE Alu 0 311 1 215 285 122 24 chr21 15789547 15789670 -29117900 - MIR SINE MIR -115 147 13 421 271 130 26 chr21 15790662 15790854 -29116716 + MIR SINE MIR 27 238 -24 2452 76 0 0 chr21 15791045 15791349 -29116221 + AluSg SINE Alu 1 304 -6 2571 165 24 7 chr21 15791617 15792036 -29115534 + MSTB LTR MaLR 1 426 0 226 284 74 0 chr21 15792270 15792365 -29115205 + L1MC/D LINE L1 5811 5912 -1896 533 240 139 51 chr21 15793138 15793503 -29114067 + HAL1b LINE L1 66 472 -876 2063 223 53 68 chr21 15793503 15793668 -29113902 + MLT1F LTR MaLR 3 169 -373 2188 84 27 10 chr21 15793668 15793965 -29113605 + AluSp SINE Alu 1 302 -11 2063 223 53 68 chr21 15793965 15794347 -29113223 + MLT1F LTR MaLR 169 542 0 533 240 139 51 chr21 15794347 15794390 -29113180 + HAL1b LINE L1 472 510 -838 239 214 0 0 chr21 15794398 15794440 -29113130 + HAL1b LINE L1 490 531 -817 2170 109 0 3 chr21 15794479 15794791 -29112779 + AluSq SINE Alu 2 312 0 796 250 17 6 chr21 15794814 15794990 -29112580 + AluJb SINE Alu 126 303 -9 597 245 65 82 chr21 15794991 15795407 -29112163 + HAL1b LINE L1 611 1019 -329 2501 63 0 0 chr21 15795418 15795717 -29111853 - AluY SINE Alu -12 299 1 2328 103 3 0 chr21 15795799 15796111 -29111459 - AluSp SINE Alu 0 313 1 1939 153 0 0 chr21 15796180 15796508 -29111062 - AluJo SINE Alu 0 330 3 504 297 57 19 chr21 15796512 15796721 -29110849 - L1ME LINE L1 -308 5813 5597 618 245 97 10 chr21 15796756 15796952 -29110618 - MIR SINE MIR -4 258 46 436 290 110 0 chr21 15796996 15797141 -29110429 + MIR SINE MIR 37 197 -65 2390 86 3 0 chr21 15797141 15797444 -29110126 + AluSg SINE Alu 2 305 -5 246 237 36 43 chr21 15798022 15798161 -29109409 - Zaphod DNA AcHobo -297 3734 3597 244 39 0 98 chr21 15798169 15798188 -29109382 - Zaphod DNA AcHobo -3050 981 962 800 164 0 8 chr21 15798188 15798339 -29109231 + FLAM_C SINE Alu 1 133 0 244 39 0 98 chr21 15798339 15798370 -29109200 - Zaphod DNA AcHobo -3069 962 936 2138 214 134 54 chr21 15798379 15798536 -29109034 - Zaphod DNA AcHobo -3071 960 817 2282 80 3 3 chr21 15798536 15798847 -29108723 - AluSp SINE Alu 0 311 1 2138 214 134 54 chr21 15798847 15799466 -29108104 - Zaphod DNA AcHobo -3214 817 101 2189 130 3 0 chr21 15799466 15799773 -29107797 - AluSx SINE Alu -4 308 1 2138 214 134 54 chr21 15799773 15799875 -29107695 - Zaphod DNA AcHobo -3930 101 9 2184 95 0 3 chr21 15800110 15800444 -29107126 + AluSg SINE Alu 1 333 0 1942 155 0 0 chr21 15801148 15801538 -29106032 - AluSx SINE Alu 0 390 1 1394 149 73 45 chr21 15801690 15801978 -29105592 + AluJo SINE Alu 17 312 0 237 33 0 0 chr21 15801978 15802008 -29105562 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr21 15802060 15802084 -29105486 + AT_rich Low_complexity Low_complexity 1 24 0 529 281 90 4 chr21 15802097 15802364 -29105206 - L1ME4a LINE L1 -2 6119 5830 2427 83 7 0 chr21 15802373 15802675 -29104895 - AluSp SINE Alu -8 305 2 972 217 6 0 chr21 15802681 15802847 -29104723 - FAM SINE Alu -8 167 1 2424 62 0 0 chr21 15802856 15803188 -29104382 - AluY SINE Alu 0 311 1 2599 55 0 3 chr21 15803641 15803953 -29103617 - AluY SINE Alu 0 311 1 1486 108 0 19 chr21 15803999 15804211 -29103359 - AluSx SINE Alu -2 310 103 2138 106 27 0 chr21 15804211 15804504 -29103066 + AluSq SINE Alu 1 301 -12 2128 101 7 19 chr21 15804506 15804813 -29102757 + AluSx SINE Alu 1 303 -9 883 95 0 0 chr21 15804813 15804929 -29102641 - AluSx SINE Alu -197 116 1 316 255 74 34 chr21 15805003 15805152 -29102418 - L1M4 LINE L1 -893 5253 5099 339 229 72 0 chr21 15805152 15805235 -29102335 + L1ME3A LINE L1 6071 6159 -11 378 0 0 0 chr21 15805270 15805312 -29102258 + (TG)n Simple_repeat Simple_repeat 2 43 0 359 273 33 33 chr21 15805316 15805437 -29102133 - Zaphod DNA AcHobo -3652 379 259 186 43 0 0 chr21 15805459 15805482 -29102088 + (CA)n Simple_repeat Simple_repeat 2 24 0 32 26 0 0 chr21 15806887 15806926 -29100644 + AT_rich Low_complexity Low_complexity 1 39 0 371 263 97 0 chr21 15807546 15807659 -29099911 + MLT1K LTR MaLR 353 476 -112 408 227 67 25 chr21 15807659 15807778 -29099792 + MER96B DNA MER1_type? 1 124 -293 212 57 0 29 chr21 15807911 15807946 -29099624 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2013 112 3 18 chr21 15807948 15808233 -29099337 - AluSx SINE Alu -31 281 1 4108 77 28 9 chr21 15808258 15808792 -29098778 - L1PA10 LINE L1 -9 6159 5616 2114 121 3 3 chr21 15808797 15809095 -29098475 - AluSg SINE Alu -12 298 1 233 273 0 91 chr21 15809188 15809276 -29098294 + MLT1K LTR MaLR 500 579 -9 223 250 138 0 chr21 15809297 15809377 -29098193 + MIR SINE MIR 171 261 -1 938 257 32 8 chr21 15809624 15809877 -29097693 + LTR16B LTR ERVL 204 462 -2 206 31 0 31 chr21 15810175 15810207 -29097363 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 860 144 0 27 chr21 15811057 15811203 -29096367 - FLAM_C SINE Alu -1 142 1 2600 154 31 19 chr21 15811626 15812047 -29095523 - MSTB LTR MaLR 0 426 1 1831 177 0 0 chr21 15812181 15812475 -29095095 + AluJb SINE Alu 1 294 -18 1157 292 90 18 chr21 15812629 15813074 -29094496 + LTR16C LTR ERVL 1 477 -14 1314 112 52 4 chr21 15814446 15814679 -29092891 - L1MA4 LINE L1 -14 6286 6043 6821 23 0 0 chr21 15815534 15816308 -29091262 - L1PA3 LINE L1 0 6155 5382 291 402 117 0 chr21 15816582 15816975 -29090595 + L2 LINE L2 2301 2739 -575 2137 105 42 0 chr21 15817599 15817885 -29089685 + AluSg SINE Alu 3 300 -10 634 192 0 25 chr21 15817892 15818012 -29089558 + FLAM_C SINE Alu 1 117 -16 392 258 40 71 chr21 15818061 15818259 -29089311 - L2 LINE L2 0 3313 3122 24 0 0 0 chr21 15818292 15818316 -29089254 + AT_rich Low_complexity Low_complexity 1 24 0 243 307 79 0 chr21 15818740 15818854 -29088716 - L2 LINE L2 -217 3055 2933 2409 93 3 0 chr21 15819927 15820229 -29087341 - AluSx SINE Alu -7 305 3 671 198 181 6 chr21 15820320 15820502 -29087068 - ORSL DNA AcHobo -61 214 1 2020 111 14 4 chr21 15820663 15820967 -29086603 + AluSq SINE Alu 1 307 0 1851 107 114 0 chr21 15821102 15821364 -29086206 + AluSx SINE Alu 1 292 -20 740 97 18 0 chr21 15821365 15821479 -29086091 + LTR9B LTR ERV1 445 560 -84 992 266 56 73 chr21 15821487 15821660 -29085910 + L1MEd LINE L1 466 640 -5479 2223 97 7 0 chr21 15821660 15821960 -29085610 + AluSq SINE Alu 1 302 -11 992 266 56 73 chr21 15821960 15822095 -29085475 + L1MEd LINE L1 640 776 -5343 670 174 0 90 chr21 15822095 15822171 -29085399 + FLAM_A SINE Alu 1 82 -220 2052 136 7 0 chr21 15822171 15822458 -29085112 - AluSp SINE Alu -24 289 1 670 174 0 90 chr21 15822458 15822512 -29085058 + FLAM_A SINE Alu 82 120 -182 198 0 0 0 chr21 15822512 15822534 -29085036 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 670 174 0 90 chr21 15822534 15822546 -29085024 + FLAM_A SINE Alu 120 131 -171 2256 128 0 3 chr21 15822548 15822861 -29084709 + AluSx SINE Alu 1 312 0 992 266 56 73 chr21 15822861 15823301 -29084269 + L1MEd LINE L1 777 1205 -4914 2174 118 10 0 chr21 15823366 15823662 -29083908 + AluSq SINE Alu 1 299 -14 4866 117 34 14 chr21 15823829 15824150 -29083420 + MER4E LTR ERV1 1 314 -465 2153 93 3 26 chr21 15824150 15824463 -29083107 + AluSc SINE Alu 1 306 -3 2335 63 0 0 chr21 15824463 15824748 -29082822 - AluSx SINE Alu -27 285 1 4866 117 34 14 chr21 15824748 15825188 -29082382 + MER4E LTR ERV1 313 778 -1 972 229 95 53 chr21 15825389 15825747 -29081823 + HAL1 LINE L1 1 373 -2134 2222 97 3 3 chr21 15825750 15826039 -29081531 + AluSc SINE Alu 1 289 -20 2317 85 24 0 chr21 15826150 15826445 -29081125 - AluSp SINE Alu -10 303 2 2126 104 20 3 chr21 15826532 15826829 -29080741 + AluSx SINE Alu 1 302 -10 2098 104 7 0 chr21 15827517 15827797 -29079773 + AluSx SINE Alu 1 282 -30 285 92 15 31 chr21 15828124 15828189 -29079381 + (TCC)n Simple_repeat Simple_repeat 3 66 0 218 189 0 19 chr21 15828247 15828300 -29079270 + CT-rich Low_complexity Low_complexity 3 54 0 1008 108 12 30 chr21 15828429 15828596 -29078974 - AluJo SINE Alu -117 195 32 1641 65 0 0 chr21 15828596 15828795 -29078775 + AluSg/x SINE Alu 74 272 -40 277 264 8 139 chr21 15829111 15829172 -29078398 + MER5B DNA MER1_type 65 132 -46 216 86 0 0 chr21 15829172 15829207 -29078363 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2517 41 3 3 chr21 15829209 15829504 -29078066 - AluY SINE Alu -16 295 1 277 264 8 139 chr21 15829504 15829568 -29078002 + MER5B DNA MER1_type 133 176 -2 342 264 23 0 chr21 15829818 15829905 -29077665 - MIR SINE MIR -28 234 146 261 88 0 0 chr21 15830167 15830201 -29077369 - FLAM_A SINE Alu -77 55 22 2134 98 35 0 chr21 15832475 15832760 -29074810 - AluSp SINE Alu -17 296 2 1391 170 33 65 chr21 15832993 15833299 -29074271 + AluJb SINE Alu 1 296 -16 2370 60 20 3 chr21 15833367 15833666 -29073904 + AluY SINE Alu 1 304 -7 223 135 0 39 chr21 15833863 15833915 -29073655 + (TAG)n Simple_repeat Simple_repeat 1 50 0 471 272 19 25 chr21 15833926 15834088 -29073482 - MIR SINE MIR -18 244 84 223 216 0 20 chr21 15834324 15834375 -29073195 + MER5A DNA MER1_type 14 63 -126 1306 140 159 15 chr21 15834524 15834795 -29072775 + L1MA8 LINE L1 5982 6291 0 21 36 0 0 chr21 15836235 15836263 -29071307 + AT_rich Low_complexity Low_complexity 1 28 0 183 333 49 29 chr21 15837054 15837156 -29070414 + L2 LINE L2 3209 3312 -1 1665 92 0 0 chr21 15837598 15837804 -29069766 + AluSg/x SINE Alu 85 290 -22 267 103 0 0 chr21 15837814 15837853 -29069717 + (CA)n Simple_repeat Simple_repeat 2 40 0 184 295 21 74 chr21 15837863 15837958 -29069612 + L2 LINE L2 2236 2325 -989 201 258 48 0 chr21 15838232 15838294 -29069276 - MER5A DNA MER1_type -92 97 33 264 326 133 23 chr21 15838655 15839045 -29068525 - L2 LINE L2 -862 2452 2020 2247 99 0 0 chr21 15839156 15839460 -29068110 - AluSx SINE Alu 0 304 1 447 180 57 41 chr21 15839844 15839966 -29067604 - FLAM_A SINE Alu -1 141 18 2416 90 3 0 chr21 15839975 15840285 -29067285 - AluSp SINE Alu -2 311 1 195 289 157 12 chr21 15841030 15841113 -29066457 + L2 LINE L2 3176 3270 -43 44 20 0 0 chr21 15841496 15841547 -29066023 + AT_rich Low_complexity Low_complexity 1 51 0 2202 118 10 0 chr21 15841688 15841866 -29065704 - AluSx SINE Alu -4 308 124 330 26 0 0 chr21 15841866 15841905 -29065665 + (TG)n Simple_repeat Simple_repeat 2 40 0 2202 118 10 0 chr21 15841905 15842031 -29065539 - AluSx SINE Alu -188 124 1 2311 96 0 46 chr21 15842116 15842440 -29065130 + AluSx SINE Alu 1 309 -3 1842 125 26 72 chr21 15842450 15842754 -29064816 + AluJo SINE Alu 1 290 -22 1118 177 138 0 chr21 15843705 15843988 -29063582 - MER33 DNA MER1_type 0 324 3 22 0 0 0 chr21 15844318 15844340 -29063230 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 15844669 15844690 -29062880 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 652 125 48 0 chr21 15844981 15845085 -29062485 - HY1 scRNA scRNA -3 109 1 384 65 0 48 chr21 15845622 15845706 -29061864 - Alu SINE Alu 0 302 244 2372 97 0 3 chr21 15845899 15846210 -29061360 - AluY SINE Alu 0 311 2 2349 69 7 7 chr21 15846255 15846545 -29061025 - AluSp SINE Alu -23 290 1 2379 82 20 0 chr21 15846864 15847168 -29060402 - AluSg SINE Alu 0 310 1 2088 141 0 0 chr21 15847168 15847458 -29060112 - AluSx SINE Alu -21 291 1 1422 243 83 69 chr21 15847638 15847772 -29059798 - L1ME3A LINE L1 -49 6121 5990 2163 97 0 55 chr21 15847772 15848102 -29059468 - AluSx SINE Alu 0 312 1 1422 243 83 69 chr21 15848102 15848369 -29059201 - L1ME3A LINE L1 -180 5990 5728 2229 123 0 0 chr21 15848369 15848670 -29058900 + AluSx SINE Alu 1 301 -11 1422 243 83 69 chr21 15848670 15848855 -29058715 - L1ME3A LINE L1 -442 5728 5520 2298 113 0 3 chr21 15848855 15849165 -29058405 + AluSg SINE Alu 1 309 -1 1422 243 83 69 chr21 15849165 15849260 -29058310 - L1ME3A LINE L1 -650 5520 5428 462 224 112 0 chr21 15849613 15849729 -29057841 - FLAM_C SINE Alu -9 134 6 1334 179 48 55 chr21 15849762 15850053 -29057517 - AluJo SINE Alu -6 306 18 419 276 99 52 chr21 15850570 15850802 -29056768 - MIR SINE MIR -2 260 18 472 286 123 27 chr21 15851322 15851542 -29056028 + MIR SINE MIR 22 262 0 537 129 0 0 chr21 15851845 15851938 -29055632 + (TA)n Simple_repeat Simple_repeat 2 94 0 2196 92 37 0 chr21 15851938 15852232 -29055338 - AluSg SINE Alu -5 305 1 2150 123 13 0 chr21 15852618 15852919 -29054651 - AluSx SINE Alu -7 305 1 1041 186 11 5 chr21 15852979 15853167 -29054403 - AluJb SINE Alu -26 286 98 809 146 0 42 chr21 15853184 15853328 -29054242 - AluJo SINE Alu -162 150 13 1847 168 0 3 chr21 15853562 15853859 -29053711 + AluJo SINE Alu 1 296 -16 2266 113 0 3 chr21 15854594 15854895 -29052675 - AluSx SINE Alu -12 300 1 201 287 75 43 chr21 15855551 15855645 -29051925 - L2 LINE L2 -5 3267 3171 2202 98 7 3 chr21 15855840 15856136 -29051434 - AluY SINE Alu -13 298 2 1762 156 3 41 chr21 15856361 15856675 -29050895 + AluJo SINE Alu 1 302 -10 301 289 151 7 chr21 15856679 15856831 -29050739 - L2 LINE L2 -609 2705 2532 218 264 126 11 chr21 15857422 15857509 -29050061 + MIR SINE MIR 153 249 -13 1354 207 32 84 chr21 15857754 15858137 -29049433 - MLT1A2 LTR MaLR 0 374 11 21 36 0 0 chr21 15858159 15858187 -29049383 + AT_rich Low_complexity Low_complexity 1 28 0 253 177 25 51 chr21 15858456 15858535 -29049035 - L1MC/D LINE L1 -2052 5756 5680 28 0 0 0 chr21 15858739 15858767 -29048803 + AT_rich Low_complexity Low_complexity 1 28 0 2384 139 62 58 chr21 15858791 15859108 -29048462 - L1MC1 LINE L1 0 6333 6012 2420 57 0 20 chr21 15859108 15859405 -29048165 + AluY SINE Alu 1 291 -20 2384 139 62 58 chr21 15859405 15859589 -29047981 - L1MC1 LINE L1 -321 6012 5830 1312 180 105 24 chr21 15859556 15859889 -29047681 - L1MC4a LINE L1 -368 7440 7081 * 907 120 0 8 chr21 15861718 15861851 -29045719 + FLAM_C SINE Alu 1 132 -1 362 250 73 0 chr21 15862239 15862335 -29045235 - MLT1H LTR MaLR -15 534 432 372 230 93 22 chr21 15862430 15862569 -29045001 - MLT1H LTR MaLR -286 263 115 225 0 0 0 chr21 15862910 15862935 -29044635 + (T)n Simple_repeat Simple_repeat 1 25 0 1484 106 0 34 chr21 15863268 15863476 -29044094 - AluSg/x SINE Alu -18 294 94 2212 131 3 0 chr21 15863610 15863916 -29043654 - AluSq SINE Alu -6 307 1 2258 84 202 6 chr21 15864175 15864532 -29043038 - MSTA LTR MaLR -1 427 1 21 0 0 0 chr21 15865588 15865609 -29041961 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 15865889 15865923 -29041647 + AT_rich Low_complexity Low_complexity 1 34 0 382 241 156 49 chr21 15866921 15867145 -29040425 - MIR SINE MIR -14 248 1 216 233 68 117 chr21 15867145 15867251 -29040319 + MIR SINE MIR 107 204 -58 2191 102 10 0 chr21 15867912 15868205 -29039365 + AluSg SINE Alu 1 296 -14 1807 141 25 0 chr21 15868955 15869258 -29038312 + AluSx SINE Alu 1 310 0 31 0 0 0 chr21 15870739 15870770 -29036800 + AT_rich Low_complexity Low_complexity 1 31 0 2031 123 0 0 chr21 15870770 15871039 -29036531 - AluSx SINE Alu -22 290 22 2161 118 13 0 chr21 15871449 15871754 -29035816 - AluY SINE Alu -2 309 1 188 284 80 34 chr21 15872848 15872936 -29034634 - L2 LINE L2 -394 2919 2828 1073 193 55 22 chr21 15873206 15873481 -29034089 - L1MD3 LINE L1 -11 7984 7701 867 223 60 0 chr21 15873479 15873694 -29033876 - L1MC4a LINE L1 -462 7346 7119 * 377 166 201 43 chr21 15874742 15874881 -29032689 + L1ME2 LINE L1 5558 5718 -448 320 261 43 9 chr21 15874970 15875085 -29032485 + LTR65 LTR ERV1 1 119 -550 726 230 166 38 chr21 15875399 15875790 -29031780 + L1ME2 LINE L1 5713 6153 -11 25 31 0 0 chr21 15875919 15875951 -29031619 + AT_rich Low_complexity Low_complexity 1 32 0 1522 168 4 19 chr21 15875978 15876246 -29031324 - AluJo SINE Alu -25 287 24 1454 164 45 30 chr21 15877041 15877309 -29030261 - AluJb SINE Alu -27 285 14 1768 153 29 19 chr21 15877498 15877806 -29029764 - AluJb SINE Alu 0 312 2 182 356 0 17 chr21 15879783 15879842 -29027728 - MER5A DNA MER1_type -66 123 66 1495 136 30 8 chr21 15879876 15880140 -29027430 - Tigger1 DNA MER2_type -71 2347 2078 1528 156 0 8 chr21 15880155 15880392 -29027178 - AluJb SINE Alu -10 302 68 3573 145 14 6 chr21 15880392 15881025 -29026545 - Tigger1 DNA MER2_type -1314 1104 467 415 197 0 0 chr21 15881032 15881108 -29026462 + FRAM SINE Alu 55 130 -46 2227 146 27 73 chr21 15881153 15881497 -29026073 - Tigger1 DNA MER2_type -1961 457 140 2527 63 0 0 chr21 15881497 15881799 -29025771 + AluY SINE Alu 1 302 -9 2227 146 27 73 chr21 15881799 15881933 -29025637 - Tigger1 DNA MER2_type -2278 140 1 1398 171 81 48 chr21 15881969 15882048 -29025522 + MER2 DNA MER2_type 2 77 -268 755 97 89 32 chr21 15882048 15882172 -29025398 + FLAM_C SINE Alu 1 131 -2 1398 171 81 48 chr21 15882172 15882425 -29025145 + MER2 DNA MER2_type 77 345 0 21 82 0 0 chr21 15882517 15882566 -29025004 + AT_rich Low_complexity Low_complexity 1 49 0 2194 110 0 0 chr21 15882566 15882856 -29024714 - AluSx SINE Alu -6 306 17 288 0 0 0 chr21 15883120 15883152 -29024418 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr21 15883661 15883682 -29023888 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr21 15884784 15884814 -29022756 + (A)n Simple_repeat Simple_repeat 1 30 0 32 57 0 0 chr21 15885527 15885580 -29021990 + AT_rich Low_complexity Low_complexity 1 53 0 2533 60 0 0 chr21 15885963 15886265 -29021305 - AluY SINE Alu -9 302 1 847 145 15 0 chr21 15886397 15886528 -29021042 - FLAM_C SINE Alu 0 133 1 188 67 33 0 chr21 15887197 15887227 -29020343 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr21 15887527 15887557 -29020013 + AT_rich Low_complexity Low_complexity 1 30 0 1055 225 7 33 chr21 15888262 15888533 -29019037 - MLT1A1 LTR MaLR -75 290 27 1132 133 8 112 chr21 15888717 15888958 -29018612 - MER20 DNA MER1_type -1 218 3 277 215 315 8 chr21 15888999 15889129 -29018441 + MIR SINE MIR 16 185 -77 2117 102 3 36 chr21 15889917 15890221 -29017349 + AluSx SINE Alu 1 294 -18 231 299 26 13 chr21 15890270 15890347 -29017223 + L3 LINE CR1 828 905 -672 925 195 112 82 chr21 15890818 15891203 -29016367 - MLT1B LTR MaLR -20 370 1 2136 107 21 0 chr21 15891464 15891754 -29015816 + AluSx SINE Alu 1 296 -16 254 88 0 0 chr21 15891848 15891882 -29015688 - U2 snRNA snRNA -154 34 1 497 314 165 18 chr21 15892211 15892612 -29014958 - L2 LINE L2 -769 2545 2086 415 248 83 8 chr21 15892612 15892745 -29014825 - L2 LINE L2 -962 2352 2210 504 48 0 0 chr21 15892826 15892889 -29014681 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1689 153 17 3 chr21 15892999 15893318 -29014252 - AluJo SINE Alu 0 312 1 2202 76 0 11 chr21 15893330 15893605 -29013965 - AluY SINE Alu -14 297 26 2503 77 0 0 chr21 15893643 15893942 -29013628 + AluSx SINE Alu 1 299 -13 577 269 86 51 chr21 15894099 15894333 -29013237 + MIR SINE MIR 19 260 -2 303 281 62 23 chr21 15894389 15894517 -29013053 - MER94 DNA DNA 0 134 2 580 137 39 0 chr21 15894641 15894743 -29012827 + HY1 scRNA scRNA 7 112 0 430 103 0 0 chr21 15894944 15895002 -29012568 + Alu SINE Alu 238 295 -17 252 0 0 0 chr21 15895450 15895478 -29012092 + (T)n Simple_repeat Simple_repeat 1 28 0 2827 147 60 30 chr21 15895583 15896182 -29011388 - L1MB1 LINE L1 -109 6059 5443 200 191 95 0 chr21 15896212 15896275 -29011295 - L2 LINE L2 -1122 2192 2124 1872 105 54 11 chr21 15896392 15896669 -29010901 + AluJb SINE Alu 1 289 -23 2360 98 0 0 chr21 15897114 15897421 -29010149 - AluY SINE Alu -4 307 1 801 194 8 0 chr21 15897830 15897959 -29009611 - FLAM_C SINE Alu -13 130 1 26 0 0 0 chr21 15898010 15898036 -29009534 + AT_rich Low_complexity Low_complexity 1 26 0 1658 158 35 3 chr21 15898174 15898458 -29009112 + AluJb SINE Alu 1 293 -19 1796 188 0 0 chr21 15898596 15898888 -29008682 - AluJb SINE Alu -20 292 1 584 319 90 12 chr21 15898985 15899399 -29008171 - L1MC/D LINE L1 -1999 5809 5358 1805 130 13 27 chr21 15899399 15899699 -29007871 + AluJo SINE Alu 1 296 -16 584 319 90 12 chr21 15899699 15899716 -29007854 - L1MC/D LINE L1 -2450 5358 5344 284 0 0 27 chr21 15899758 15899795 -29007775 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 943 79 0 29 chr21 15899796 15899935 -29007635 - AluSq SINE Alu -32 281 147 1050 104 0 7 chr21 15900003 15900147 -29007423 - AluSq SINE Alu -166 146 4 21 0 0 0 chr21 15900157 15900178 -29007392 + AT_rich Low_complexity Low_complexity 1 21 0 265 180 180 0 chr21 15901971 15902032 -29005538 + MIR SINE MIR 3 74 -188 284 263 0 0 chr21 15902070 15902146 -29005424 + MIR SINE MIR 185 260 -2 2238 84 24 3 chr21 15902387 15902685 -29004885 + AluSg SINE Alu 1 304 -6 341 310 60 0 chr21 15903090 15903206 -29004364 + L1ME4a LINE L1 5738 5860 -261 2351 62 0 7 chr21 15903365 15903653 -29003917 - AluSc SINE Alu -21 288 3 341 115 51 0 chr21 15904195 15904273 -29003297 + (TA)n Simple_repeat Simple_repeat 1 82 0 739 185 0 0 chr21 15904307 15904426 -29003144 - FLAM_C SINE Alu -12 131 13 545 282 118 68 chr21 15904429 15904576 -29002994 - L1MC/D LINE L1 -1101 5045 4907 8796 31 7 1 chr21 15904576 15906411 -29001159 - L1PA4 LINE L1 -1 6154 4315 545 282 118 68 chr21 15906411 15906880 -29000690 - L1MC/D LINE L1 -1239 4907 4398 388 275 128 51 chr21 15907441 15907754 -28999816 - L1ME LINE L1 -302 5819 5483 26 0 0 0 chr21 15907896 15907922 -28999648 + AT_rich Low_complexity Low_complexity 1 26 0 368 293 116 12 chr21 15908994 15909158 -28998412 + MIR SINE MIR 24 204 -58 25 0 0 0 chr21 15909159 15909184 -28998386 + AT_rich Low_complexity Low_complexity 1 25 0 836 106 152 0 chr21 15910066 15910217 -28997353 + MER2 DNA MER2_type 2 175 -170 26 30 0 0 chr21 15910218 15910251 -28997319 + AT_rich Low_complexity Low_complexity 1 33 0 255 238 70 128 chr21 15912481 15912536 -28995034 + MER5A DNA MER1_type 1 58 -125 2308 83 13 0 chr21 15912536 15912850 -28994720 + L1PA14 LINE L1 5844 6161 0 255 238 70 128 chr21 15912850 15912966 -28994604 + MER5A DNA MER1_type 58 167 -16 22 0 0 0 chr21 15913138 15913160 -28994410 + AT_rich Low_complexity Low_complexity 1 22 0 793 245 142 52 chr21 15913352 15913913 -28993657 - L1MC4a LINE L1 -494 5668 5323 1884 220 102 36 chr21 15913946 15914674 -28992896 - L1MC4a LINE L1 -818 5328 4553 276 30 0 0 chr21 15915464 15915497 -28992073 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr21 15916029 15916059 -28991511 + AT_rich Low_complexity Low_complexity 1 30 0 1679 170 7 17 chr21 15917019 15917308 -28990262 - AluJb SINE Alu -17 295 10 2375 89 0 10 chr21 15917313 15917617 -28989953 - AluSx SINE Alu -11 301 1 858 173 0 0 chr21 15918376 15918509 -28989061 + AluJo SINE Alu 1 133 -169 2510 57 0 3 chr21 15918719 15919015 -28988555 + AluSg SINE Alu 1 295 -15 435 248 14 71 chr21 15919021 15919162 -28988408 + MIR3 SINE MIR 28 160 -48 828 233 5 16 chr21 15919198 15919391 -28988179 + AluJo SINE Alu 122 312 0 295 309 49 0 chr21 15921541 15921664 -28985906 + L2 LINE L2 2932 3060 -212 2095 96 10 14 chr21 15921999 15922292 -28985278 + AluSq SINE Alu 1 292 -21 186 344 104 21 chr21 15923661 15923757 -28983813 + MIR SINE MIR 38 141 -67 763 285 50 0 chr21 15923937 15924158 -28983412 - MIR SINE MIR 0 262 31 456 283 66 0 chr21 15924593 15924791 -28982779 - L1ME LINE L1 -348 5773 5563 1574 186 13 36 chr21 15925922 15926223 -28981347 + AluJo SINE Alu 1 294 -18 1331 167 51 19 chr21 15927404 15927715 -28979855 + L1MB8 LINE L1 5546 5866 -312 2296 167 25 15 chr21 15927715 15928179 -28979391 + L1MB8 LINE L1 5684 6162 -16 408 264 121 86 chr21 15930256 15930714 -28976856 + L1M2 LINE L1 590 1021 -5828 21 0 0 0 chr21 15931685 15931706 -28975864 + AT_rich Low_complexity Low_complexity 1 21 0 1832 185 3 0 chr21 15932299 15932596 -28974974 + AluJb SINE Alu 1 298 -14 1699 162 53 34 chr21 15932843 15933201 -28974369 + MLT1A1 LTR MaLR 1 365 0 550 148 0 11 chr21 15933226 15933314 -28974256 - MER44D DNA MER2_type 0 705 619 * 859 113 173 11 chr21 15933309 15933494 -28974076 - MER44D DNA MER2_type -123 486 2 2225 110 3 10 chr21 15933806 15934114 -28973456 + AluSx SINE Alu 1 306 -6 1973 86 0 0 chr21 15934173 15934418 -28973152 - AluY SINE Alu -12 299 55 213 39 0 0 chr21 15935135 15935161 -28972409 + (TTG)n Simple_repeat Simple_repeat 2 27 0 273 0 0 0 chr21 15935238 15935269 -28972301 - U6 snRNA snRNA -76 31 1 13314 118 26 66 chr21 15935329 15935906 -28971664 - Tigger1 DNA MER2_type -2 2416 1818 632 178 116 8 chr21 15935906 15936035 -28971535 + FRAM SINE Alu 1 141 -35 13314 118 26 66 chr21 15936035 15936362 -28971208 - Tigger1 DNA MER2_type -600 1818 1480 2186 123 3 19 chr21 15936362 15936672 -28970898 - AluSg SINE Alu -5 305 1 13314 118 26 66 chr21 15936672 15937075 -28970495 - Tigger1 DNA MER2_type -938 1480 1063 1426 121 0 206 chr21 15937075 15937448 -28970122 + AluSx SINE Alu 1 296 -16 13314 118 26 66 chr21 15937448 15938524 -28969046 - Tigger1 DNA MER2_type -1355 1063 3 1519 183 123 73 chr21 15938586 15939024 -28968546 - MLT2C2 LTR ERVL -2 518 1 1185 211 57 38 chr21 15939343 15939697 -28967873 + MLT1A1 LTR MaLR 1 365 0 242 86 0 0 chr21 15940837 15940872 -28966698 - AluJb SINE Alu -11 291 257 1344 151 0 10 chr21 15940873 15941079 -28966491 - AluJb SINE Alu -108 204 1 1368 277 82 81 chr21 15941314 15942053 -28965517 + L2 LINE L2 2153 2892 -422 1501 231 42 31 chr21 15942073 15942600 -28964970 - MLT1E2 LTR MaLR -1 504 1 774 280 118 30 chr21 15942610 15942974 -28964596 + L2 LINE L2 2910 3305 -8 438 289 120 82 chr21 15943078 15943171 -28964399 - L3 LINE CR1 -1092 485 397 858 113 60 6 chr21 15943171 15943339 -28964231 + L1MA4 LINE L1 6109 6285 -15 438 289 120 82 chr21 15943339 15943587 -28963983 - L3 LINE CR1 -1180 397 131 21 0 0 0 chr21 15944100 15944121 -28963449 + AT_rich Low_complexity Low_complexity 1 21 0 199 219 0 0 chr21 15944598 15944639 -28962931 + L2 LINE L2 3230 3270 -2 398 349 24 30 chr21 15944681 15944850 -28962720 - MIR3 SINE MIR -25 183 16 2273 105 3 0 chr21 15944912 15945208 -28962362 + AluSp SINE Alu 1 297 -16 523 143 133 0 chr21 15945365 15945463 -28962107 + AluJ SINE Alu 22 132 -180 397 324 0 29 chr21 15945946 15946037 -28961533 - L2 LINE L2 -5 3267 3180 2018 197 5 91 chr21 15946037 15946341 -28961229 - MLT2B1 LTR ERVL 0 520 286 2464 67 0 7 chr21 15946341 15946640 -28960930 - AluSx SINE Alu -15 297 1 2018 197 5 91 chr21 15946640 15946904 -28960666 - MLT2B1 LTR ERVL -234 286 1 397 324 0 29 chr21 15946904 15946948 -28960622 - L2 LINE L2 -92 3180 3136 1883 130 0 34 chr21 15946961 15947253 -28960317 + AluSx SINE Alu 27 308 -4 963 192 6 17 chr21 15947253 15947448 -28960122 + AluJ SINE Alu 134 312 0 715 164 9 0 chr21 15947529 15947639 -28959931 + FLAM_A SINE Alu 1 111 -31 300 111 0 0 chr21 15947644 15947689 -28959881 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 406 239 79 92 chr21 15948069 15948538 -28959032 - L1MC5 LINE L1 -48 7913 7451 1470 160 4 4 chr21 15949712 15949949 -28957621 - AluJb SINE Alu -75 237 1 2368 66 7 7 chr21 15950423 15950724 -28956846 + AluY SINE Alu 1 301 -10 3130 157 114 32 chr21 15950848 15951120 -28956450 + LTR48 LTR ERV1 1 249 -538 1775 139 45 7 chr21 15951120 15951408 -28956162 + AluJo SINE Alu 1 299 -13 3130 157 114 32 chr21 15951408 15951862 -28955708 + LTR48 LTR ERV1 249 787 0 950 188 0 24 chr21 15952577 15952747 -28954823 - FAM SINE Alu -9 40 1 299 342 26 28 chr21 15952962 15953104 -28954466 - MIR3 SINE MIR -51 157 30 24 0 0 0 chr21 15953403 15953427 -28954143 + AT_rich Low_complexity Low_complexity 1 24 0 2217 222 24 16 chr21 15953561 15954186 -28953384 - L1M4 LINE L1 -1429 4717 4088 25 0 0 0 chr21 15954194 15954219 -28953351 + AT_rich Low_complexity Low_complexity 1 25 0 492 233 146 16 chr21 15954561 15954929 -28952641 - MLT1G3 LTR MaLR 0 555 97 1934 100 32 55 chr21 15954955 15955264 -28952306 - AluSx SINE Alu -10 302 1 455 117 0 13 chr21 15955385 15955462 -28952108 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1802 138 6 55 chr21 15955554 15955881 -28951689 + AluSx SINE Alu 1 311 -1 312 356 43 5 chr21 15955928 15956116 -28951454 + L2 LINE L2 2824 3018 -254 195 291 26 68 chr21 15956131 15956248 -28951322 + L2 LINE L2 3135 3246 -67 674 212 15 0 chr21 15956842 15956974 -28950596 + AluJo SINE Alu 1 134 -178 2632 119 46 5 chr21 15957262 15957673 -28949897 - MSTA LTR MaLR 0 428 1 9407 169 16 4 chr21 15957676 15959304 -28948266 - MSTA-int LTR MaLR -4 1647 1 2402 143 44 7 chr21 15959304 15959717 -28947853 - MSTA LTR MaLR 0 428 1 273 320 92 49 chr21 15959842 15960147 -28947423 - L2 LINE L2 -782 2532 2205 1475 226 40 0 chr21 15960147 15960322 -28947248 - AluJb SINE Alu -3 309 116 300 27 0 0 chr21 15960322 15960359 -28947211 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1475 226 40 0 chr21 15960359 15960480 -28947090 - AluJb SINE Alu -196 116 1 273 320 92 49 chr21 15960480 15960564 -28947006 - L2 LINE L2 -1109 2205 2126 422 271 123 19 chr21 15960566 15960721 -28946849 - MER5A DNA MER1_type -3 186 16 207 139 0 0 chr21 15960849 15960885 -28946685 + (GA)n Simple_repeat Simple_repeat 2 37 0 267 358 58 23 chr21 15961314 15961574 -28945996 - L2 LINE L2 -1930 1384 1116 293 253 120 0 chr21 15961725 15961800 -28945770 + MIR SINE MIR 28 111 -97 447 279 56 25 chr21 15961833 15961994 -28945576 + MER5B DNA MER1_type 12 177 -1 2022 162 20 0 chr21 15962103 15962449 -28945121 - MLT1A1 LTR MaLR -3 362 10 2073 144 38 71 chr21 15962630 15963052 -28944518 + MSTB LTR MaLR 19 426 0 388 348 105 50 chr21 15963205 15963700 -28943870 + L2 LINE L2 88 609 -2705 883 271 119 35 chr21 15963921 15964494 -28943076 - L1MC4a LINE L1 -1883 5925 5305 24 0 0 0 chr21 15964689 15964713 -28942857 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr21 15964723 15964747 -28942823 + AT_rich Low_complexity Low_complexity 1 24 0 874 204 74 4 chr21 15965132 15965362 -28942208 + ORSL DNA AcHobo 30 275 0 1139 154 200 17 chr21 15965397 15965637 -28941933 - AluJb SINE Alu -18 284 1 262 283 115 32 chr21 15965943 15966068 -28941502 - MLT1H1 LTR MaLR 0 555 415 316 362 36 0 chr21 15966077 15966215 -28941355 + L2 LINE L2 1860 2002 -1312 1832 251 22 28 chr21 15966311 15966810 -28940760 - MLT1D LTR MaLR 0 505 10 265 312 65 0 chr21 15967029 15967106 -28940464 - L2 LINE L2 -2893 421 340 901 154 64 0 chr21 15967120 15967276 -28940294 + FAM SINE Alu 1 41 -8 307 273 10 0 chr21 15968490 15968589 -28938981 + (TA)n Simple_repeat Simple_repeat 2 101 0 1459 149 48 10 chr21 15968591 15968880 -28938690 - L1MA7 LINE L1 -5 6286 5987 290 324 44 15 chr21 15969642 15969778 -28937792 + MIR SINE MIR 110 249 -13 22 0 0 0 chr21 15969878 15969900 -28937670 + AT_rich Low_complexity Low_complexity 1 22 0 4943 62 23 0 chr21 15970530 15971131 -28936439 + L1PA7 LINE L1 5534 6148 -6 2409 80 6 10 chr21 15971404 15971718 -28935852 - AluSp SINE Alu 0 313 1 528 232 76 45 chr21 15971753 15971977 -28935593 - HAL1 LINE L1 -1 2506 2276 485 267 48 79 chr21 15972045 15972375 -28935195 - HAL1 LINE L1 -232 2275 1956 2600 239 75 60 chr21 15972419 15973463 -28934107 - HAL1 LINE L1 -629 1878 820 4126 162 27 7 chr21 15973543 15974240 -28933330 - MER50 LTR ERV1 -23 711 1 1014 186 5 29 chr21 15974240 15974442 -28933128 + MER3 DNA MER1_type 13 209 0 355 312 235 23 chr21 15974450 15974671 -28932899 - HAL1 LINE L1 -1804 703 436 407 282 102 93 chr21 15974708 15974875 -28932695 - HAL1 LINE L1 -2171 336 172 2304 85 14 0 chr21 15974875 15975168 -28932402 - AluSc SINE Alu -12 297 1 407 282 102 93 chr21 15975168 15975182 -28932388 - HAL1 LINE L1 -2335 172 160 1609 147 15 33 chr21 15975182 15975454 -28932116 - AluJo SINE Alu -45 267 1 407 282 102 93 chr21 15975454 15975594 -28931976 - HAL1 LINE L1 -2347 160 11 1719 194 130 52 chr21 15977045 15977712 -28929858 - LTR48 LTR ERV1 -7 637 1 408 333 94 9 chr21 15977749 15977962 -28929608 - MIR SINE MIR -12 250 20 2184 95 0 0 chr21 15979244 15979545 -28928025 + AluSc SINE Alu 6 306 0 2034 141 3 3 chr21 15979567 15979873 -28927697 + AluSq SINE Alu 1 306 -7 2727 23 0 0 chr21 15980349 15980652 -28926918 + AluY SINE Alu 1 303 -8 284 306 130 0 chr21 15980690 15980798 -28926772 - L2 LINE L2 0 3272 3151 590 202 9 0 chr21 15980936 15981045 -28926525 + MER63 DNA MER1_type 948 1057 -3 240 356 149 0 chr21 15981572 15981760 -28925810 - L2 LINE L2 -574 2740 2525 417 298 19 0 chr21 15981823 15981927 -28925643 + L2 LINE L2 3166 3271 -1 3406 154 14 30 chr21 15981983 15982651 -28924919 + L1MC1 LINE L1 5173 5828 -505 1284 179 49 0 chr21 15982651 15982875 -28924695 + AluJb SINE Alu 1 235 -77 1588 145 74 27 chr21 15982875 15983171 -28924399 + L1MC1 LINE L1 5841 6150 -183 1510 180 194 19 chr21 15983171 15983593 -28923977 + LTR54B LTR ERV1 1 496 -2 697 186 5 62 chr21 15983593 15983674 -28923896 + L1MC1 LINE L1 6150 6234 -99 192 40 0 0 chr21 15983674 15983699 -28923871 + (TG)n Simple_repeat Simple_repeat 2 26 0 697 186 5 62 chr21 15983699 15983798 -28923772 + L1MC1 LINE L1 6234 6321 -12 2272 107 0 0 chr21 15983798 15984097 -28923473 + AluY SINE Alu 1 299 -12 697 186 5 62 chr21 15984097 15984109 -28923461 + L1MC1 LINE L1 6321 6332 -1 1544 249 60 10 chr21 15984481 15984883 -28922687 - LTR51 LTR ERV1 -9 662 241 1848 137 68 30 chr21 15985014 15985351 -28922219 - MER61C LTR ERV1 0 434 85 253 293 122 0 chr21 15985399 15985481 -28922089 - MER101B LTR ERV1 -469 101 10 2116 96 48 0 chr21 15985954 15986246 -28921324 - AluSq SINE Alu -7 306 1 837 128 0 38 chr21 15986958 15987091 -28920479 + FLAM_C SINE Alu 1 128 -15 243 258 0 0 chr21 15987188 15987254 -28920316 - MIR SINE MIR -56 206 141 2102 108 17 3 chr21 15987404 15987692 -28919878 - AluSg SINE Alu -18 292 1 484 281 65 7 chr21 15987696 15987835 -28919735 - MIR SINE MIR -114 148 2 235 256 26 26 chr21 15988046 15988124 -28919446 - MER117 DNA MER1_type -117 80 3 198 0 0 0 chr21 15988171 15988193 -28919377 + (TC)n Simple_repeat Simple_repeat 1 22 0 1254 156 14 18 chr21 15988262 15988480 -28919090 + MLT1B LTR MaLR 1 217 -173 889 175 75 18 chr21 15988494 15988719 -28918851 + MER39 LTR ERV1 1 281 -426 * 1990 130 45 60 chr21 15988699 15988938 -28918632 + MER39 LTR ERV1 175 416 -291 2278 128 0 0 chr21 15988938 15989250 -28918320 - AluSx SINE Alu 0 312 1 1990 130 45 60 chr21 15989250 15989406 -28918164 + MER39 LTR ERV1 416 707 0 766 206 31 12 chr21 15989406 15989566 -28918004 + MLT1B LTR MaLR 228 390 0 1831 151 34 7 chr21 15990174 15990465 -28917105 + AluJo SINE Alu 1 299 -13 249 139 0 0 chr21 15991543 15991586 -28915984 + (A)n Simple_repeat Simple_repeat 1 43 0 465 66 40 26 chr21 15992775 15992851 -28914719 + MADE1 DNA Mariner 2 78 -2 5175 72 25 15 chr21 15993043 15993465 -28914105 + PABL_A LTR ERV1 1 433 -227 2270 108 3 13 chr21 15993465 15993780 -28913790 + AluSx SINE Alu 1 312 0 5175 72 25 15 chr21 15993780 15994011 -28913559 + PABL_A LTR ERV1 433 660 0 325 264 11 154 chr21 15994264 15994387 -28913183 - MIR SINE MIR -10 252 113 4120 187 39 53 chr21 15994387 15995354 -28912216 - LTR13 LTR ERVK 0 954 1 325 264 11 154 chr21 15995354 15995423 -28912147 - MIR SINE MIR -149 113 108 2305 83 0 30 chr21 15995423 15995724 -28911846 + AluY SINE Alu 1 292 -19 325 264 11 154 chr21 15995724 15995803 -28911767 - MIR SINE MIR -154 108 19 3411 123 86 2 chr21 15995940 15996426 -28911144 + MER1A DNA MER1_type 1 527 0 2338 82 3 0 chr21 15997599 15997892 -28909678 + AluSg SINE Alu 5 298 -12 921 217 21 77 chr21 15998137 15998174 -28909396 - MER58A DNA MER1_type -2196 224 187 2478 60 0 3 chr21 15998174 15998473 -28909097 + AluY SINE Alu 1 298 -13 921 217 21 77 chr21 15998473 15998670 -28908900 - MER58A DNA MER1_type -2233 187 3 3423 110 41 20 chr21 15999369 15999969 -28907601 - MER4B LTR ERV1 0 779 2 260 266 81 58 chr21 15999985 16000084 -28907486 + MER5B DNA MER1_type 61 161 -28 1546 123 71 121 chr21 16000172 16000537 -28907033 - LTR49 LTR ERV1 0 595 249 518 107 0 0 chr21 16000534 16000609 -28906961 - LTR49 LTR ERV1 -266 329 255 * 1891 98 115 0 chr21 16000612 16000907 -28906663 - LTR49 LTR ERV1 -266 329 1 194 395 0 0 chr21 16000912 16000993 -28906577 + MIR SINE MIR 48 128 -134 26 64 0 0 chr21 16001253 16001300 -28906270 + AT_rich Low_complexity Low_complexity 1 47 0 14968 196 42 13 chr21 16001301 16001658 -28905912 - L1PB1 LINE L1 -1 6866 6521 441 0 0 0 chr21 16001658 16001707 -28905863 + (TG)n Simple_repeat Simple_repeat 2 50 0 14968 196 42 13 chr21 16001707 16003117 -28904453 - L1PB1 LINE L1 -346 6521 5154 243 0 0 0 chr21 16003117 16003144 -28904426 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 14968 196 42 13 chr21 16003144 16007794 -28899776 - L1PB1 LINE L1 -1713 5154 101 4140 136 30 19 chr21 16008077 16008704 -28898866 + MER41B LTR ERV1 1 634 -1 2488 40 7 3 chr21 16009194 16009492 -28898078 - AluY SINE Alu -12 299 1 2266 118 0 0 chr21 16010330 16010636 -28896934 - AluSg1 SINE Alu -3 306 1 2516 51 3 16 chr21 16011105 16011417 -28896153 - AluY SINE Alu -3 308 1 1925 129 0 41 chr21 16011933 16012054 -28895516 - AluSx SINE Alu 0 302 178 7681 81 2 1 chr21 16012054 16013021 -28894549 - LTR5 LTR ERVK -1 968 1 1925 129 0 41 chr21 16013021 16013213 -28894357 - AluSx SINE Alu -124 178 1 269 276 95 59 chr21 16013268 16013453 -28894117 + MER5A DNA MER1_type 2 178 0 384 22 0 0 chr21 16013550 16013595 -28893975 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 245 342 43 34 chr21 16013951 16014068 -28893502 + L2 LINE L2 3139 3256 -16 625 233 68 34 chr21 16014223 16014429 -28893141 - LTR7 LTR ERV1 0 450 238 603 141 20 107 chr21 16014882 16015031 -28892539 - LTR7 LTR ERV1 -314 136 1 285 286 61 20 chr21 16015130 16015228 -28892342 - L2 LINE L2 -84 3229 3128 501 289 64 71 chr21 16015231 16015679 -28891891 - L2 LINE L2 -118 3195 2748 2151 112 33 3 chr21 16015679 16015983 -28891587 - AluSp SINE Alu 0 313 1 501 289 64 71 chr21 16015983 16016017 -28891553 - L2 LINE L2 -565 2748 2715 2304 120 0 0 chr21 16016123 16016432 -28891138 + AluSg SINE Alu 1 309 -1 434 306 103 98 chr21 16016432 16016587 -28890983 - L2 LINE L2 -842 2472 2319 2060 133 0 0 chr21 16016587 16016872 -28890698 - AluSx SINE Alu -27 285 1 1762 168 0 30 chr21 16016880 16017184 -28890386 - AluJb SINE Alu -17 295 1 434 306 103 98 chr21 16017184 16017408 -28890162 - L2 LINE L2 -1001 2313 2079 1422 186 29 26 chr21 16017438 16017744 -28889826 - MER21B LTR ERV1 0 863 557 2256 96 3 0 chr21 16018173 16018466 -28889104 - AluSc SINE Alu -12 297 4 4986 114 20 44 chr21 16018697 16019485 -28888085 - MER4E LTR ERV1 -10 769 1 317 133 333 0 chr21 16019500 16019575 -28887995 - MER21B LTR ERV1 -305 558 459 238 61 0 0 chr21 16019573 16019606 -28887964 + Tigger1 DNA MER2_type 1444 1476 -942 * 2069 111 7 14 chr21 16019613 16019901 -28887669 + AluSx SINE Alu 6 291 -21 2681 183 49 0 chr21 16019908 16020361 -28887209 - MER21B LTR ERV1 -388 475 1 217 273 18 0 chr21 16020374 16020429 -28887141 - L2 LINE L2 -1369 1945 1890 212 146 0 49 chr21 16020859 16020900 -28886670 + (TATG)n Simple_repeat Simple_repeat 1 39 0 2504 132 22 79 chr21 16020900 16021354 -28886216 + MSTA LTR MaLR 1 428 0 392 0 21 0 chr21 16021357 16021405 -28886165 + (TG)n Simple_repeat Simple_repeat 2 50 0 2436 74 3 0 chr21 16021411 16021707 -28885863 - AluSp SINE Alu -15 298 2 277 100 20 0 chr21 16021819 16021869 -28885701 - L1MB5 LINE L1 -25 6149 6099 962 121 5 27 chr21 16021869 16022060 -28885510 + MER4B LTR ERV1 1 225 -385 4343 208 56 16 chr21 16022072 16023075 -28884495 + L1PBa LINE L1 6 1048 -5815 9467 151 49 3 chr21 16023076 16025685 -28881885 + L1PBa LINE L1 1093 3972 -2890 1019 94 7 7 chr21 16025690 16025828 -28881742 - L1PA11 LINE L1 -2 6172 6035 862 46 55 0 chr21 16025828 16025937 -28881633 - MER85 DNA T2_type -24 115 1 1077 79 6 18 chr21 16025937 16026101 -28881469 - L1PA11 LINE L1 -121 6053 5892 2032 128 18 98 chr21 16026104 16026503 -28881067 + MER4B LTR ERV1 188 554 -56 627 83 73 28 chr21 16026483 16026592 -28880978 + MER4D LTR ERV1 759 872 0 * 263 190 17 35 chr21 16026592 16026650 -28880920 - L1MB5 LINE L1 -72 6102 6046 1069 154 0 18 chr21 16026651 16026820 -28880750 + FRAM SINE Alu 1 163 -13 1192 194 75 18 chr21 16026864 16027143 -28880427 - L1MB5 LINE L1 -178 5996 5702 * 7123 175 17 38 chr21 16027112 16029585 -28877985 - L1MB2 LINE L1 -38 6133 3718 240 171 0 53 chr21 16030135 16030211 -28877359 + CT-rich Low_complexity Low_complexity 4 75 0 1415 201 5 93 chr21 16030407 16030850 -28876720 - L1MA9 LINE L1 -30 6282 5879 4917 101 23 1 chr21 16030870 16031561 -28876009 - THE1B-int LTR MaLR -874 706 1 1646 141 100 27 chr21 16031561 16031860 -28875710 - THE1B LTR MaLR 0 364 44 1954 134 25 0 chr21 16033222 16033505 -28874065 - AluSx SINE Alu -22 290 1 1692 178 21 45 chr21 16033705 16034042 -28873528 - MLT1C LTR MaLR -2 465 137 4889 160 14 182 chr21 16034044 16034725 -28872845 + L1PB4 LINE L1 3000 3793 -2353 1301 159 0 32 chr21 16034725 16034945 -28872625 - AluSx SINE Alu -99 213 1 4889 160 14 182 chr21 16034945 16035621 -28871949 + L1PB4 LINE L1 3793 4261 -1885 2824 88 5 39 chr21 16035621 16035660 -28871910 - THE1C LTR MaLR 0 375 336 2347 61 14 7 chr21 16035660 16035956 -28871614 + AluY SINE Alu 1 298 -13 2824 88 5 39 chr21 16035956 16036304 -28871266 - THE1C LTR MaLR -39 336 1 4889 160 14 182 chr21 16036304 16036466 -28871104 + L1PB4 LINE L1 4261 4448 -1698 7019 58 4 42 chr21 16036474 16037466 -28870104 - SVA Other Other 0 1386 433 1292 74 10 93 chr21 16037534 16038201 -28869369 - SVA Other Other -520 866 430 2706 76 23 69 chr21 16038265 16038944 -28868626 - SVA Other Other -520 866 393 5003 167 21 19 chr21 16039006 16040471 -28867099 + L1PB4 LINE L1 4435 5915 -241 2129 106 0 33 chr21 16040471 16040772 -28866798 + AluSg SINE Alu 1 291 -19 5003 167 21 19 chr21 16040772 16041014 -28866556 + L1PB4 LINE L1 5915 6155 -1 648 201 21 14 chr21 16041014 16041158 -28866412 - MLT1C LTR MaLR -319 148 4 400 350 49 74 chr21 16041367 16041664 -28865906 + L2 LINE L2 2488 2772 -542 599 163 43 113 chr21 16041664 16041805 -28865765 + FLAM_A SINE Alu 1 131 -2 400 350 49 74 chr21 16041805 16041938 -28865632 + L2 LINE L2 2772 2907 -407 355 306 179 8 chr21 16041931 16042065 -28865505 - MER5A DNA MER1_type -7 182 26 * 386 289 78 121 chr21 16042118 16042464 -28865106 + L2 LINE L2 2932 3262 -10 332 123 0 18 chr21 16042465 16042522 -28865048 + MER50 LTR ERV1 499 554 -180 1257 52 0 0 chr21 16042540 16042694 -28864876 - AluY SINE Alu -14 297 144 740 172 7 40 chr21 16042694 16042845 -28864725 + MER50 LTR ERV1 587 732 -2 341 180 0 0 chr21 16042845 16042906 -28864664 + MER50-int LTR ERV1 43 103 -7102 243 146 0 0 chr21 16042908 16042949 -28864621 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 481 192 20 20 chr21 16043883 16043982 -28863588 - MER63 DNA MER1_type -311 751 27 603 298 64 17 chr21 16044206 16044548 -28863022 - LTR16A LTR ERVL 0 450 18 2176 258 25 25 chr21 16045072 16045627 -28861943 + MLT1H1 LTR MaLR 1 555 0 1709 149 29 11 chr21 16045687 16045968 -28861602 - AluJb SINE Alu 0 312 27 340 248 108 16 chr21 16046883 16047012 -28860558 - MIR3 SINE MIR -14 194 54 292 246 63 63 chr21 16047064 16047206 -28860364 - L2 LINE L2 0 3313 3172 297 243 14 0 chr21 16047781 16047855 -28859715 + MER116 DNA Mariner 1 75 -5 232 246 66 0 chr21 16047922 16047983 -28859587 + MIR SINE MIR 87 151 -111 2471 50 0 7 chr21 16048022 16048325 -28859245 + AluY SINE Alu 1 301 -10 2467 143 25 0 chr21 16048349 16048742 -28858828 - L1 LINE L1 -981 5165 4763 1561 250 215 17 chr21 16048742 16049572 -28857998 + MER69 DNA AcHobo 50 2371 -155 843 169 6 52 chr21 16049575 16049791 -28857779 - AluJb SINE Alu 0 312 134 2418 73 3 3 chr21 16049791 16050093 -28857477 - AluY SINE Alu -9 302 1 451 206 66 15 chr21 16050117 16050253 -28857317 + MER69 DNA AcHobo 2375 2517 -9 491 249 72 76 chr21 16050713 16050950 -28856620 + MLT1J LTR MaLR 1 276 -213 302 257 28 32 chr21 16051107 16051252 -28856318 + MIR SINE MIR 61 200 -61 1653 211 60 0 chr21 16051352 16051754 -28855816 - L1MD3 LINE L1 0 7995 7570 2501 124 81 2 chr21 16051769 16052163 -28855407 - MSTA LTR MaLR 0 428 4 231 250 0 0 chr21 16052626 16052678 -28854892 + GA-rich Low_complexity Low_complexity 3 54 0 213 310 38 38 chr21 16053399 16053449 -28854121 + L2 LINE L2 2471 2520 -794 2521 41 0 3 chr21 16053449 16053743 -28853827 - AluY SINE Alu -18 293 1 213 310 38 38 chr21 16053743 16053850 -28853720 + L2 LINE L2 2519 2628 -686 1560 194 32 0 chr21 16054546 16054824 -28852746 - AluJo SINE Alu -25 287 1 2332 91 0 7 chr21 16055143 16055450 -28852120 - AluSc SINE Alu -4 305 1 1526 251 43 14 chr21 16056373 16056795 -28850775 - MER57B LTR ERV1 0 434 1 2150 153 21 30 chr21 16057357 16057840 -28849730 - MER39 LTR ERV1 0 707 178 734 188 9 0 chr21 16057844 16057956 -28849614 + AluJb SINE Alu 6 118 -194 23 33 0 0 chr21 16057962 16057992 -28849578 + AT_rich Low_complexity Low_complexity 1 30 0 949 159 94 0 chr21 16057992 16058162 -28849408 - MER39 LTR ERV1 -513 194 9 3799 139 29 10 chr21 16059511 16060147 -28847423 - MER39B LTR ERV1 -1 630 1 7225 153 31 41 chr21 16060203 16061631 -28845939 - MER39B-int LTR ERV1 -148 6183 4769 1537 188 14 24 chr21 16061627 16061915 -28845655 - MER39B-int LTR ERV1 -6046 285 1 * 752 187 116 30 chr21 16061919 16061996 -28845574 - MER39B LTR ERV1 -3 650 581 1598 175 24 7 chr21 16061996 16062287 -28845283 - AluJo SINE Alu -16 296 1 752 187 116 30 chr21 16062287 16062407 -28845163 - MER39B LTR ERV1 -72 581 436 655 62 0 0 chr21 16062409 16062489 -28845081 + AluSx SINE Alu 2 81 -231 2297 98 0 22 chr21 16062490 16062805 -28844765 + AluY SINE Alu 1 308 -3 1661 109 30 0 chr21 16062805 16063034 -28844536 + AluSx SINE Alu 73 309 -3 2687 134 24 61 chr21 16063034 16063329 -28844241 - MER39B LTR ERV1 -208 445 172 2643 51 0 3 chr21 16063329 16063641 -28843929 - AluY SINE Alu 0 311 1 2687 134 24 61 chr21 16063641 16063807 -28843763 - MER39B LTR ERV1 -481 172 1 876 193 74 73 chr21 16063807 16064111 -28843459 - MER39 LTR ERV1 -72 629 267 566 215 210 56 chr21 16064719 16065176 -28842394 - LTR48 LTR ERV1 -16 771 157 277 233 102 0 chr21 16065146 16065248 -28842322 - LTR48B LTR ERV1 -587 120 1 * 266 156 0 0 chr21 16065880 16065925 -28841645 + T-rich Low_complexity Low_complexity 1 45 0 19082 33 1 1 chr21 16065927 16070127 -28837443 - L1PA4 LINE L1 0 6155 1957 21 57 0 0 chr21 16071222 16071257 -28836313 + AT_rich Low_complexity Low_complexity 1 35 0 216 158 0 0 chr21 16071395 16071433 -28836137 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2048 161 59 12 chr21 16071436 16072059 -28835511 + MER39 LTR ERV1 1 707 0 207 294 29 0 chr21 16072061 16072129 -28835441 + (TATG)n Simple_repeat Simple_repeat 2 71 0 757 273 43 45 chr21 16072204 16072778 -28834792 - L1MC4a LINE L1 -1841 5967 5342 353 324 80 74 chr21 16072906 16073091 -28834479 - L1MC4a LINE L1 -922 5224 5042 1714 196 14 3 chr21 16073091 16073387 -28834183 - AluJb SINE Alu -11 301 3 353 324 80 74 chr21 16073387 16073584 -28833986 - L1MC4a LINE L1 -1104 5042 4848 1704 189 0 0 chr21 16073584 16073869 -28833701 - AluJo SINE Alu -25 287 3 1929 162 0 7 chr21 16073877 16074180 -28833390 - AluJb SINE Alu -11 301 1 353 324 80 74 chr21 16074180 16074470 -28833100 - L1MC4a LINE L1 -1304 4842 4533 551 115 0 0 chr21 16074495 16074582 -28832988 - AluS SINE Alu -5 306 220 4097 120 120 74 chr21 16074587 16075992 -28831578 - pTR5 LTR ERV1 0 2438 761 570 209 9 0 chr21 16075992 16076097 -28831473 - AluSp SINE Alu -72 241 136 1755 168 106 26 chr21 16076209 16076572 -28830998 + MER39 LTR ERV1 1 333 -374 1872 193 55 24 chr21 16076572 16076991 -28830579 + MSTB1 LTR MaLR 1 432 0 1755 168 106 26 chr21 16076991 16077239 -28830331 + MER39 LTR ERV1 333 707 0 282 179 15 0 chr21 16077402 16077469 -28830101 - L1MA8 LINE L1 -2 6289 6222 276 136 0 0 chr21 16077470 16077514 -28830056 - Alu SINE Alu -259 44 1 3063 179 39 23 chr21 16077575 16078268 -28829302 + MER67C LTR ERV1 7 710 0 715 232 67 74 chr21 16078276 16078573 -28828997 + MLT1J LTR MaLR 217 511 0 1492 208 61 14 chr21 16079700 16080046 -28827524 + MLT1A1 LTR MaLR 1 362 -3 917 176 7 7 chr21 16080513 16080666 -28826904 - FRAM SINE Alu -4 172 20 327 310 94 35 chr21 16080702 16081044 -28826526 - L1MC4a LINE L1 -1907 5901 5540 255 31 0 0 chr21 16082392 16082424 -28825146 + (CA)n Simple_repeat Simple_repeat 2 33 0 660 222 138 6 chr21 16082586 16082753 -28824817 - MER5A DNA MER1_type 0 189 1 75 45 0 0 chr21 16083216 16083326 -28824244 + AT_rich Low_complexity Low_complexity 1 110 0 430 210 70 0 chr21 16083326 16083426 -28824144 - MER45 DNA AcHobo -61 117 11 269 220 0 0 chr21 16083635 16083685 -28823885 + MER5A DNA MER1_type 9 58 -131 21 0 0 56 chr21 16083952 16083969 -28823601 + AT_rich Low_complexity Low_complexity 1 17 -17 2516 61 0 3 chr21 16083969 16084281 -28823289 + AluY SINE Alu 1 311 0 21 0 0 56 chr21 16084281 16084299 -28823271 + AT_rich Low_complexity Low_complexity 17 34 0 22 70 0 0 chr21 16084316 16084359 -28823211 + AT_rich Low_complexity Low_complexity 1 43 0 203 289 19 0 chr21 16084780 16084832 -28822738 + MIR SINE MIR 81 133 -75 1566 183 20 22 chr21 16084911 16085266 -28822304 - MLT1A1 LTR MaLR -11 354 1 30462 104 11 56 chr21 16087612 16094055 -28813515 - L1PA7 LINE L1 0 6154 12 491 255 115 5 chr21 16094499 16094691 -28812879 + MIR SINE MIR 22 234 -28 24 32 0 0 chr21 16094705 16094736 -28812834 + AT_rich Low_complexity Low_complexity 1 31 0 246 62 0 0 chr21 16094845 16094877 -28812693 + (TATG)n Simple_repeat Simple_repeat 4 35 0 686 284 110 0 chr21 16095664 16095900 -28811670 + MIR SINE MIR 1 262 0 38 22 0 0 chr21 16096246 16096291 -28811279 + AT_rich Low_complexity Low_complexity 1 45 0 2385 103 3 0 chr21 16096335 16096647 -28810923 - AluSq SINE Alu 0 313 1 539 245 14 0 chr21 16096720 16096859 -28810711 - L1MC4 LINE L1 -658 7384 7244 1033 235 199 19 chr21 16096865 16097389 -28810181 - L1MC4 LINE L1 -957 7085 6468 444 205 27 18 chr21 16097433 16097545 -28810025 + MER4A LTR ERV1 1 113 -551 1423 246 52 62 chr21 16097567 16098149 -28809421 + LTR34 LTR ERV1 104 679 -20 210 71 0 0 chr21 16099771 16099799 -28807771 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1778 166 41 19 chr21 16100930 16101297 -28806273 + MLT2D LTR ERVL 38 412 -2 439 199 183 8 chr21 16101943 16102074 -28805496 - MIR3 SINE MIR -14 194 41 200 333 142 43 chr21 16102883 16103325 -28804245 + L2 LINE L2 1328 1846 -1468 2028 196 23 15 chr21 16103325 16103718 -28803852 - MSTD LTR MaLR 0 396 1 200 333 142 43 chr21 16103718 16103873 -28803697 + L2 LINE L2 1846 1984 -1330 1924 168 0 22 chr21 16104152 16104467 -28803103 - AluJo SINE Alu 0 312 5 291 208 139 0 chr21 16104696 16104797 -28802773 - LTR67 LTR ERVL -10 547 433 821 236 82 71 chr21 16105875 16106163 -28801407 + L1ME2 LINE L1 5711 6007 -157 2240 103 3 0 chr21 16106163 16106455 -28801115 + AluSx SINE Alu 1 293 -19 821 236 82 71 chr21 16106455 16106615 -28800955 + L1ME2 LINE L1 6007 6164 0 306 0 0 0 chr21 16107112 16107146 -28800424 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr21 16107383 16107406 -28800164 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 16110855 16110881 -28796689 + AT_rich Low_complexity Low_complexity 1 26 0 452 322 92 11 chr21 16111818 16111992 -28795578 + MIR SINE MIR 29 216 -46 313 302 42 0 chr21 16112057 16112153 -28795417 + MIR SINE MIR 50 149 -113 498 232 38 63 chr21 16112206 16112521 -28795049 + L1MC5 LINE L1 7630 7936 -25 305 154 34 7 chr21 16112643 16112879 -28794691 + AluJb SINE Alu 1 296 -4 447 237 103 43 chr21 16113295 16113331 -28794239 + MER112 DNA MER1_type 6 38 -222 1904 143 13 7 chr21 16113331 16113631 -28793939 - AluJo SINE Alu -10 302 1 447 237 103 43 chr21 16113631 16113826 -28793744 + MER112 DNA MER1_type 38 251 -9 35 0 0 0 chr21 16115766 16115801 -28791769 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 16116184 16116212 -28791358 + AT_rich Low_complexity Low_complexity 1 28 0 193 296 54 85 chr21 16117176 16117493 -28790077 + L2 LINE L2 2304 2610 -704 392 335 209 19 chr21 16117496 16117702 -28789868 + L2 LINE L2 3027 3271 -1 23 0 0 0 chr21 16117704 16117727 -28789843 + AT_rich Low_complexity Low_complexity 1 23 0 4265 58 74 71 chr21 16118757 16119133 -28788437 + L1PA7 LINE L1 5491 5871 -283 2538 48 0 0 chr21 16119133 16119428 -28788142 - AluY SINE Alu -16 295 1 4265 58 74 71 chr21 16119428 16119712 -28787858 + L1PA7 LINE L1 5871 6153 -1 1829 149 0 11 chr21 16120030 16120305 -28787265 - AluSx SINE Alu -23 289 18 182 333 17 0 chr21 16120852 16120912 -28786658 - L3b LINE CR1 -22 1561 1501 1585 176 34 20 chr21 16121097 16121392 -28786178 + AluJb SINE Alu 1 299 -13 804 177 109 21 chr21 16122893 16123085 -28784485 + MER3 DNA MER1_type 1 209 0 2186 119 0 0 chr21 16123186 16123472 -28784098 - AluSq SINE Alu -27 286 1 2118 105 4 4 chr21 16124415 16124691 -28782879 + AluSq SINE Alu 1 276 -37 1362 145 200 7 chr21 16124982 16125305 -28782265 + MSTA LTR MaLR 1 417 -11 5725 162 22 39 chr21 16125314 16126467 -28781103 + MSTA-int LTR MaLR 3 1135 -445 1155 125 29 19 chr21 16126467 16126675 -28780895 + MSTA-int LTR MaLR 1371 1580 0 1778 150 161 6 chr21 16126675 16127036 -28780534 + MSTA LTR MaLR 1 417 -11 467 281 41 6 chr21 16127501 16127672 -28779898 + L2 LINE L2 3133 3309 -4 22 35 0 0 chr21 16128137 16128166 -28779404 + AT_rich Low_complexity Low_complexity 1 29 0 423 293 61 7 chr21 16129038 16129185 -28778385 + MIR SINE MIR 81 235 -27 1633 177 77 32 chr21 16130201 16130386 -28777184 + MSTD LTR MaLR 1 176 -220 2473 80 0 0 chr21 16130386 16130697 -28776873 + AluY SINE Alu 1 311 0 1633 177 77 32 chr21 16130697 16130890 -28776680 + MSTD LTR MaLR 176 396 0 1050 156 68 5 chr21 16131472 16131664 -28775906 - MER46A DNA MER2_type 0 236 33 440 274 120 0 chr21 16131723 16131840 -28775730 + FLAM_A SINE Alu 10 140 -2 2635 132 21 9 chr21 16132298 16132721 -28774849 - MSTA LTR MaLR 0 428 1 2262 105 7 0 chr21 16133523 16133817 -28773753 - AluSp SINE Alu -17 296 1 583 336 34 8 chr21 16134373 16134608 -28772962 + MIR SINE MIR 1 241 -21 341 239 123 15 chr21 16134603 16134733 -28772837 + MIR3 SINE MIR 63 206 -2 * 730 206 0 15 chr21 16134843 16134974 -28772596 - FLAM_A SINE Alu -2 131 3 22 0 0 0 chr21 16135513 16135535 -28772035 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 16137236 16137264 -28770306 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 16137528 16137559 -28770011 + GC_rich Low_complexity Low_complexity 1 31 0 224 242 30 15 chr21 16138000 16138066 -28769504 - MIR SINE MIR -103 105 39 480 299 147 0 chr21 16138272 16138429 -28769141 + MER5A DNA MER1_type 9 188 -1 956 251 67 6 chr21 16138713 16139044 -28768526 - L1ME2 LINE L1 -6 6158 5808 1415 147 4 4 chr21 16139045 16139283 -28768287 - MSTB1 LTR MaLR -1 431 194 32 0 0 0 chr21 16139292 16139324 -28768246 + AT_rich Low_complexity Low_complexity 1 32 0 385 227 20 80 chr21 16139324 16139474 -28768096 - MSTB1 LTR MaLR -239 187 47 1768 178 3 13 chr21 16139477 16139781 -28767789 + AluJb SINE Alu 5 305 -7 1736 231 159 14 chr21 16139781 16140297 -28767273 + MLT1E2 LTR MaLR 27 617 -9 997 128 64 0 chr21 16140957 16141113 -28766457 + THE1B LTR MaLR 199 364 0 1952 137 79 0 chr21 16141289 16141670 -28765900 - Tigger3(Golem) DNA MER2_type -150 2879 2469 1965 158 104 15 chr21 16141672 16142065 -28765505 - MSTA LTR MaLR 0 428 1 4010 108 24 14 chr21 16142065 16142703 -28764867 - MSTA-int LTR MaLR 0 1580 937 2002 134 152 8 chr21 16143451 16143825 -28763745 + MSTA LTR MaLR 1 428 0 314 235 15 96 chr21 16144283 16144350 -28763220 - MLT1J LTR MaLR -9 502 450 2032 139 0 13 chr21 16144350 16144653 -28762917 + AluJb SINE Alu 1 299 -13 314 235 15 96 chr21 16144653 16144721 -28762849 - MLT1J LTR MaLR -61 450 378 471 252 19 0 chr21 16144747 16144854 -28762716 - AluSg/x SINE Alu -6 303 195 314 253 105 11 chr21 16144878 16144973 -28762597 - MLT1J LTR MaLR -407 104 1 1926 145 3 3 chr21 16145087 16145390 -28762180 + AluSc SINE Alu 1 303 0 2464 158 2 34 chr21 16146084 16146532 -28761038 - MER57B LTR ERV1 0 434 1 403 338 28 28 chr21 16146661 16146803 -28760767 - L2 LINE L2 0 3313 3172 578 291 78 60 chr21 16147185 16147584 -28759986 - MLT1J2 LTR MaLR -44 406 1 584 246 95 81 chr21 16148529 16148627 -28758943 + L2 LINE L2 3026 3121 -192 237 83 0 0 chr21 16148627 16148663 -28758907 + (TA)n Simple_repeat Simple_repeat 2 37 0 584 246 95 81 chr21 16148663 16148848 -28758722 + L2 LINE L2 3121 3313 0 1864 141 3 11 chr21 16149196 16149480 -28758090 - AluJo SINE Alu -4 308 27 255 311 109 50 chr21 16149810 16149929 -28757641 - L2 LINE L2 0 3272 3147 1739 134 0 0 chr21 16150768 16151006 -28756564 + AluSx SINE Alu 6 243 -69 2571 37 0 3 chr21 16151288 16151586 -28755984 - AluY SINE Alu -14 297 1 227 420 10 0 chr21 16152177 16152277 -28755293 + L2 LINE L2 3116 3216 -56 763 152 21 14 chr21 16152846 16152991 -28754579 - LTR23 LTR ERV1 -1 436 291 474 91 13 0 chr21 16152990 16153067 -28754503 - LTR23 LTR ERV1 -356 81 4 * 288 360 29 32 chr21 16153964 16154278 -28753292 - LTR49-int LTR ERV1 -2088 2559 2247 2651 157 73 77 chr21 16154283 16155061 -28752509 - LTR49-int LTR ERV1 -1843 4488 3714 8745 147 65 78 chr21 16155102 16157277 -28750293 - LTR49-int LTR ERV1 -1937 3622 1558 263 49 24 0 chr21 16158248 16158289 -28749281 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1723 134 52 140 chr21 16158492 16158971 -28748599 - LTR23 LTR ERV1 0 437 1 1750 214 102 13 chr21 16160472 16161029 -28746541 - L1ME2 LINE L1 -110 6054 5448 881 249 24 41 chr21 16161024 16161301 -28746269 + L1M4 LINE L1 5030 5304 -857 * 2379 86 0 0 chr21 16161301 16161604 -28745966 + AluY SINE Alu 1 303 -8 881 249 24 41 chr21 16161604 16161718 -28745852 + L1M4 LINE L1 5304 5418 -743 795 204 39 0 chr21 16162363 16162544 -28745026 - MER20 DNA MER1_type -3 216 29 829 130 163 3 chr21 16162613 16162908 -28744662 - MSTA LTR MaLR 0 428 1 230 250 77 0 chr21 16164651 16164703 -28742867 - L2 LINE L2 -12 3260 3205 579 308 78 52 chr21 16164983 16165370 -28742200 + LTR67 LTR ERVL 7 403 -154 306 246 0 0 chr21 16165432 16165497 -28742073 + MER31B LTR ERV1 4 68 -398 654 244 107 70 chr21 16165509 16166134 -28741436 + MER67A LTR ERV1 1 543 0 * 1267 236 141 23 chr21 16166134 16166565 -28741005 - MLT1H LTR MaLR -26 523 42 1070 191 69 20 chr21 16166803 16167106 -28740464 - MER33 DNA MER1_type 0 324 7 2300 83 0 27 chr21 16167233 16167533 -28740037 - AluSc SINE Alu -17 292 1 726 317 164 6 chr21 16167563 16167904 -28739666 - LTR16C LTR ERVL 0 491 97 1837 163 29 23 chr21 16168038 16168388 -28739182 - MLT1A1 LTR MaLR 0 365 14 2146 141 3 3 chr21 16169495 16169807 -28737763 + AluJb SINE Alu 1 312 0 2908 289 112 23 chr21 16170935 16171118 -28736452 + L2 LINE L2 1116 1281 -2033 1949 150 13 0 chr21 16171118 16171425 -28736145 - AluSx SINE Alu -1 311 1 2908 289 112 23 chr21 16171425 16172401 -28735169 + L2 LINE L2 1281 2378 -936 681 150 8 8 chr21 16172407 16172534 -28735036 - L1MB8 LINE L1 -13 6165 6039 334 113 0 0 chr21 16172540 16172593 -28734977 - L1MB8 LINE L1 -235 5943 5891 3557 136 21 59 chr21 16172593 16173306 -28734264 + Ricksha DNA DNA 2557 3242 -4 1671 176 43 0 chr21 16173313 16173636 -28733934 - L1MB8 LINE L1 -281 5897 5561 1357 249 112 18 chr21 16173645 16174143 -28733427 + L2 LINE L2 2160 2704 -610 270 152 0 0 chr21 16174160 16174206 -28733364 + Ricksha DNA DNA 2801 2846 -8 430 278 168 10 chr21 16174280 16174489 -28733081 + LTR16C LTR ERVL 240 481 -10 440 320 47 85 chr21 16174686 16174956 -28732614 + LTR67 LTR ERVL 92 338 -219 1174 186 27 68 chr21 16174956 16174985 -28732585 - MER33 DNA MER1_type -2261 324 295 2189 124 0 6 chr21 16174985 16175300 -28732270 + AluSq SINE Alu 1 313 0 1174 186 27 68 chr21 16175300 16175608 -28731962 - MER33 DNA MER1_type -2290 295 1 440 320 47 85 chr21 16175608 16175809 -28731761 + LTR67 LTR ERVL 338 545 -12 301 261 70 42 chr21 16175904 16176046 -28731524 + MLT1I LTR MaLR 1 146 -263 1724 113 33 33 chr21 16176753 16177055 -28730515 + L1PA10 LINE L1 5867 6168 0 440 243 7 59 chr21 16177082 16177218 -28730352 - L1ME1 LINE L1 -10 6156 6028 231 36 0 0 chr21 16178057 16178085 -28729485 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 919 306 117 20 chr21 16178085 16178252 -28729318 - L2 LINE L2 -16 3297 3148 3867 115 30 13 chr21 16178252 16178852 -28728718 - MER4B LTR ERV1 0 610 1 919 306 117 20 chr21 16178852 16179128 -28728442 - L2 LINE L2 -165 3148 2811 985 326 39 14 chr21 16179319 16179828 -28727742 + ERVL LTR ERVL 3600 4121 -1643 370 245 73 40 chr21 16180003 16180154 -28727416 + ERVL LTR ERVL 4408 4563 -1201 374 287 85 30 chr21 16180444 16180608 -28726962 + ERVL LTR ERVL 4894 5066 -698 369 0 0 0 chr21 16180930 16180971 -28726599 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 16180971 16181006 -28726564 + AT_rich Low_complexity Low_complexity 1 35 0 1291 183 4 21 chr21 16181015 16181256 -28726314 - AluJb SINE Alu -75 237 1 416 228 104 62 chr21 16181565 16181758 -28725812 + L2 LINE L2 3113 3313 0 1652 185 0 23 chr21 16182104 16182407 -28725163 + AluJb SINE Alu 1 296 -16 2215 117 3 16 chr21 16182532 16182840 -28724730 + AluSx SINE Alu 1 304 -8 1942 156 0 13 chr21 16183404 16183711 -28723859 - AluJo SINE Alu -9 303 1 226 289 90 32 chr21 16183776 16183932 -28723638 - MLT1J LTR MaLR -5 506 342 247 355 50 8 chr21 16184245 16184366 -28723204 - L2 LINE L2 -11 3261 3136 1164 149 34 0 chr21 16184403 16184611 -28722959 - MER61A LTR ERV1 0 343 129 7149 99 11 2 chr21 16184856 16186766 -28720804 + L1PA8A LINE L1 4208 6129 -2 673 316 74 47 chr21 16186843 16187314 -28720256 - L2 LINE L2 -556 2758 2275 2693 214 3 23 chr21 16187333 16187898 -28719672 - MLT2B3 LTR ERVL 0 554 1 2122 180 58 2 chr21 16187898 16188360 -28719210 - ERVL-B3 LTR ERVL -7 5757 5270 1563 146 142 0 chr21 16188362 16188650 -28718920 - ERVL-B3 LTR ERVL -695 5069 4741 * 10917 168 28 9 chr21 16188645 16190856 -28716714 - ERVL-B1 LTR ERVL -2286 3478 1158 22 0 0 0 chr21 16190856 16190878 -28716692 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr21 16191125 16191168 -28716402 + AT_rich Low_complexity Low_complexity 1 43 0 405 224 80 38 chr21 16191363 16191626 -28715944 - L1M4 LINE L1 -1575 4571 4298 1453 209 7 27 chr21 16191658 16191955 -28715615 - AluJo SINE Alu -21 291 1 4778 193 57 43 chr21 16191955 16193106 -28714464 - ERVL-B1 LTR ERVL -4594 1170 4 2331 216 18 18 chr21 16193114 16193629 -28713941 - MLT2B1 LTR ERVL -5 515 1 240 345 21 7 chr21 16193629 16193771 -28713799 - L2 LINE L2 -1061 2253 2110 419 384 53 49 chr21 16193839 16194290 -28713280 - L2 LINE L2 -11 3261 2809 443 262 86 45 chr21 16194600 16194821 -28712749 + MLT1K LTR MaLR 329 558 -30 396 260 59 14 chr21 16194897 16195116 -28712454 + L1ME3A LINE L1 4382 4610 -1536 26 30 0 0 chr21 16195131 16195164 -28712406 + AT_rich Low_complexity Low_complexity 1 33 0 192 152 0 0 chr21 16195164 16195197 -28712373 + (CA)n Simple_repeat Simple_repeat 2 34 0 1975 264 49 24 chr21 16195301 16196021 -28711549 + L1ME3A LINE L1 4749 5511 -651 1723 122 106 0 chr21 16196021 16196300 -28711270 + AluSg SINE Alu 1 306 0 1975 264 49 24 chr21 16196300 16196794 -28710776 + L1ME3A LINE L1 5511 5991 -171 383 284 15 8 chr21 16196799 16196933 -28710637 + L1ME3A LINE L1 6029 6163 -7 2468 74 0 13 chr21 16197204 16197515 -28710055 + AluSx SINE Alu 1 307 -5 1051 178 44 0 chr21 16198093 16198273 -28709297 + AluJb SINE Alu 124 311 -1 211 250 152 22 chr21 16198628 16198720 -28708850 + L2 LINE L2 3169 3272 0 198 150 0 0 chr21 16199215 16199255 -28708315 + (TG)n Simple_repeat Simple_repeat 2 41 0 1778 78 16 4 chr21 16199712 16199954 -28707616 + L1PA7 LINE L1 5907 6151 -3 2283 109 0 3 chr21 16200031 16200343 -28707227 - AluY SINE Alu 0 311 1 1998 143 10 0 chr21 16200513 16200813 -28706757 + AluJb SINE Alu 1 303 -9 378 247 10 0 chr21 16201521 16201618 -28705952 + MER103 DNA DNA 68 165 -1 2396 56 0 26 chr21 16202095 16202400 -28705170 - AluSg SINE Alu -13 297 1 520 333 16 16 chr21 16204606 16204849 -28702721 + MLT1J2 LTR MaLR 37 279 -171 737 214 51 39 chr21 16204868 16205141 -28702429 + Charlie4a DNA MER1_type 78 357 -1604 1700 169 43 7 chr21 16205141 16205420 -28702150 + AluJo SINE Alu 1 289 -23 737 214 51 39 chr21 16205420 16205478 -28702092 + Charlie4a DNA MER1_type 357 413 -95 523 249 73 12 chr21 16205699 16205864 -28701706 - MER105 DNA DNA -29 175 1 26 0 0 0 chr21 16206776 16206802 -28700768 + AT_rich Low_complexity Low_complexity 1 26 0 800 241 61 45 chr21 16207026 16207475 -28700095 + MLT2B1 LTR ERVL 4 464 0 1836 116 84 0 chr21 16208944 16209219 -28698351 - AluSx SINE Alu -14 298 1 621 51 0 0 chr21 16209572 16209651 -28697919 + MADE1 DNA Mariner 1 79 -1 586 234 145 45 chr21 16210809 16211146 -28696424 + MLT1J2 LTR MaLR 1 371 -79 578 251 181 51 chr21 16211345 16211852 -28695718 - L1MC4 LINE L1 0 8042 7470 13420 197 45 10 chr21 16212395 16213182 -28694388 - L1PB1 LINE L1 -2 6865 6107 2303 104 0 0 chr21 16213182 16213481 -28694089 - AluY SINE Alu -12 299 1 13420 197 45 10 chr21 16213481 16217534 -28690036 - L1PB1 LINE L1 -760 6107 1577 2716 85 95 5 chr21 16217534 16217945 -28689625 - LTR7 LTR ERV1 -2 448 1 13420 197 45 10 chr21 16217945 16219575 -28687995 - L1PB1 LINE L1 -5290 1577 6 2594 42 0 0 chr21 16220023 16220334 -28687236 - AluY SINE Alu 0 311 1 1901 179 10 37 chr21 16220339 16220742 -28686828 + MLT2C1 LTR ERVL 6 397 0 1339 243 34 29 chr21 16221712 16221796 -28685774 - MER63B DNA MER1_type -652 410 328 1812 148 3 30 chr21 16221796 16222093 -28685477 + AluJo SINE Alu 1 289 -23 1339 243 34 29 chr21 16222093 16222416 -28685154 - MER63B DNA MER1_type -734 328 1 289 248 108 99 chr21 16222506 16222549 -28685021 - L2 LINE L2 0 3313 3272 1749 246 20 13 chr21 16222549 16223008 -28684562 + LTR40b LTR ERVL 1 462 0 289 248 108 99 chr21 16223008 16223278 -28684292 - L2 LINE L2 -41 3272 2997 844 123 0 8 chr21 16223326 16223456 -28684114 + FLAM_C SINE Alu 2 130 -3 1846 93 6 121 chr21 16224262 16224594 -28682976 + AluSx SINE Alu 1 294 -8 245 260 41 0 chr21 16224952 16225018 -28682552 - MIR SINE MIR -67 141 69 2329 83 0 0 chr21 16225489 16225790 -28681780 + AluY SINE Alu 1 301 -10 13762 22 7 0 chr21 16225951 16228339 -28679231 - L1PA3 LINE L1 -2 6153 3756 29 70 0 0 chr21 16228391 16228448 -28679122 + AT_rich Low_complexity Low_complexity 1 57 0 355 118 97 201 chr21 16228883 16228944 -28678626 - MER63 DNA MER1_type -81 755 689 2414 50 0 0 chr21 16228944 16229226 -28678344 + AluY SINE Alu 30 311 0 355 118 97 201 chr21 16229226 16229308 -28678262 - MER63 DNA MER1_type -147 689 1 738 203 11 103 chr21 16229692 16229802 -28677768 + MER96B DNA MER1_type? 2 121 -296 1377 136 7 61 chr21 16229802 16229992 -28677578 - L1PB2 LINE L1 -2 6149 5977 2563 46 0 10 chr21 16229992 16230299 -28677271 - AluY SINE Alu -7 304 1 1377 136 7 61 chr21 16230299 16230387 -28677183 - L1PB2 LINE L1 -174 5977 5886 738 203 11 103 chr21 16230387 16230547 -28677023 + MER96B DNA MER1_type? 121 247 -170 411 320 140 4 chr21 16231191 16231419 -28676151 - MIR SINE MIR 0 262 4 1062 252 45 0 chr21 16231972 16232238 -28675332 - MLT1A1 LTR MaLR -6 359 82 1116 216 29 22 chr21 16232242 16232515 -28675055 + MER21B LTR ERV1 156 430 -433 744 315 66 53 chr21 16234158 16234685 -28672885 - L1M4 LINE L1 -1191 4955 4422 577 228 0 43 chr21 16234689 16234814 -28672756 - LTR33 LTR ERVL 0 521 403 2645 193 10 25 chr21 16234814 16235337 -28672233 + MLT2B2 LTR ERVL 1 515 0 577 228 0 43 chr21 16235337 16235373 -28672197 - LTR33 LTR ERVL -118 403 367 698 278 57 5 chr21 16235475 16235669 -28671901 - LTR33 LTR ERVL -317 204 1 255 61 0 0 chr21 16235732 16235765 -28671805 + (TG)n Simple_repeat Simple_repeat 2 34 0 716 260 20 15 chr21 16236076 16236162 -28671408 + MIR SINE MIR 66 150 -112 1780 147 87 35 chr21 16236162 16236508 -28671062 - THE1B LTR MaLR 0 364 1 11719 97 8 4 chr21 16236508 16238083 -28669487 - THE1B-int LTR MaLR 0 1580 1 2427 127 5 19 chr21 16238083 16238452 -28669118 - THE1B LTR MaLR 0 364 1 716 260 20 15 chr21 16238452 16238559 -28669011 + MIR SINE MIR 149 262 0 283 161 65 0 chr21 16238828 16238886 -28668684 + MLT1J LTR MaLR 106 167 -344 1209 217 15 51 chr21 16238886 16239222 -28668348 - MLT2D LTR ERVL 0 414 91 626 322 47 16 chr21 16239253 16239570 -28668000 + MLT1J2 LTR MaLR 121 447 -3 312 338 0 22 chr21 16239570 16239706 -28667864 - L2 LINE L2 -617 2697 2565 1539 136 11 79 chr21 16240618 16240979 -28666591 - MER4A LTR ERV1 0 664 270 616 102 10 10 chr21 16240993 16241091 -28666479 - MER4A LTR ERV1 -566 98 1 253 252 9 96 chr21 16241172 16241287 -28666283 - MIR SINE MIR -77 185 81 2261 104 0 3 chr21 16241321 16241619 -28665951 - AluSg SINE Alu -13 297 1 205 214 0 0 chr21 16243376 16243418 -28664152 + L2 LINE L2 3230 3271 -1 2084 126 32 29 chr21 16244258 16244632 -28662938 - THE1C LTR MaLR 0 375 1 294 73 0 0 chr21 16244836 16244877 -28662693 + (CA)n Simple_repeat Simple_repeat 2 42 0 309 277 0 43 chr21 16244888 16244982 -28662588 - L1MC4 LINE L1 -1339 6703 6614 345 207 21 11 chr21 16244986 16245080 -28662490 + L1MC4 LINE L1 1995 6981 -1341 212 175 0 0 chr21 16245667 16245707 -28661863 + L2 LINE L2 3273 3312 -1 204 363 89 14 chr21 16246263 16246409 -28661161 - L2 LINE L2 -222 3050 2894 1374 264 41 14 chr21 16247241 16247657 -28659913 + L1M2 LINE L1 10 436 -6413 352 263 81 55 chr21 16247738 16247931 -28659639 + L1M2 LINE L1 412 887 -5962 256 254 0 0 chr21 16248122 16248185 -28659385 + L1PBb LINE L1 421 483 -6367 603 246 68 100 chr21 16248371 16248651 -28658919 + L1PBb LINE L1 797 1067 -5783 341 323 21 16 chr21 16248841 16249033 -28658537 + L1PBb LINE L1 1017 1209 -5641 1930 232 111 2 chr21 16249055 16249612 -28657958 + L1PBb LINE L1 1423 2040 -4809 4903 161 15 18 chr21 16249617 16250577 -28656993 + L1PB4 LINE L1 4946 5908 -248 7828 72 3 2 chr21 16250577 16251545 -28656025 - LTR5 LTR ERVK 0 969 1 4903 161 15 18 chr21 16251545 16251617 -28655953 + L1PB4 LINE L1 5908 5979 -177 2245 109 7 7 chr21 16251617 16251920 -28655650 + AluSc SINE Alu 1 303 -6 4903 161 15 18 chr21 16251920 16252100 -28655470 + L1PB4 LINE L1 5979 6156 0 746 289 8 36 chr21 16253028 16253281 -28654289 - MIR SINE MIR -8 254 9 299 321 87 60 chr21 16254569 16254652 -28652918 - L2 LINE L2 -1738 1576 1497 2243 98 0 26 chr21 16254652 16254959 -28652611 + AluSg SINE Alu 1 299 -11 299 321 87 60 chr21 16254959 16255289 -28652281 - L2 LINE L2 -1817 1497 1152 265 320 39 29 chr21 16255679 16255782 -28651788 - L2 LINE L2 0 3313 3210 192 97 0 0 chr21 16256242 16256273 -28651297 + (TA)n Simple_repeat Simple_repeat 1 31 0 2498 57 0 10 chr21 16256322 16256636 -28650934 - AluY SINE Alu 0 311 1 2287 167 12 2 chr21 16256930 16257350 -28650220 - L1MB1 LINE L1 -1 6167 5744 32 57 0 0 chr21 16257371 16257424 -28650146 + AT_rich Low_complexity Low_complexity 1 53 0 783 254 95 71 chr21 16257773 16257817 -28649753 + L1ME3A LINE L1 5541 5582 -588 640 262 23 0 chr21 16257817 16257989 -28649581 + MER45A DNA AcHobo 1 176 -2 783 254 95 71 chr21 16257989 16258522 -28649048 + L1ME3A LINE L1 5582 6132 -38 207 0 0 0 chr21 16259145 16259168 -28648402 + (T)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr21 16259486 16259517 -28648053 + AT_rich Low_complexity Low_complexity 1 31 0 1923 168 14 24 chr21 16259568 16259937 -28647633 - MLT1A1 LTR MaLR 0 365 1 2427 131 28 0 chr21 16260081 16260433 -28647137 + THE1B LTR MaLR 1 362 -2 881 264 14 71 chr21 16260531 16260627 -28646943 + MLT2C1 LTR ERVL 1 101 -296 2026 151 140 8 chr21 16260627 16261005 -28646565 + MSTA LTR MaLR 1 428 0 881 264 14 71 chr21 16261005 16261329 -28646241 + MLT2C1 LTR ERVL 101 397 0 2194 291 43 18 chr21 16261375 16262115 -28645455 + L1M3b LINE L1 1 759 -5522 2856 272 60 27 chr21 16262209 16262787 -28644783 + L1M3b LINE L1 617 1174 -5177 2304 77 7 7 chr21 16262787 16263084 -28644486 + AluY SINE Alu 1 297 -14 2856 272 60 27 chr21 16263084 16263994 -28643576 + L1M3b LINE L1 1174 1950 -4401 2165 58 0 11 chr21 16263994 16264270 -28643300 + AluY SINE Alu 1 273 -38 2856 272 60 27 chr21 16264270 16264358 -28643212 + L1M3b LINE L1 1950 2034 -4317 1674 194 112 3 chr21 16264362 16264889 -28642681 - L1 LINE L1 -3594 3971 3385 1297 219 9 0 chr21 16264938 16265253 -28642317 + L1M3b LINE L1 2910 3227 -3123 3344 178 44 1 chr21 16265254 16265391 -28642179 + L1PB4 LINE L1 5156 5286 -870 282 29 0 0 chr21 16265391 16265426 -28642144 + (CA)n Simple_repeat Simple_repeat 2 36 0 3344 178 44 1 chr21 16265426 16266165 -28641405 + L1PB4 LINE L1 5286 6154 -2 2739 172 68 3 chr21 16266181 16266814 -28640756 + L1M3b LINE L1 3219 3892 -2458 204 213 0 0 chr21 16267825 16267872 -28639698 + A-rich Low_complexity Low_complexity 1 47 0 347 0 23 0 chr21 16268351 16268394 -28639176 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 308 0 0 chr21 16268878 16268956 -28638614 + (TA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr21 16268966 16268998 -28638572 + (TG)n Simple_repeat Simple_repeat 2 33 0 1003 309 73 24 chr21 16269482 16269810 -28637760 + L1MEc LINE L1 995 1305 -5091 1417 176 151 7 chr21 16269810 16270082 -28637488 + AluJo SINE Alu 1 311 -1 1003 309 73 24 chr21 16270082 16270602 -28636968 + L1MEc LINE L1 1305 1905 -4491 1882 127 66 33 chr21 16270602 16270964 -28636606 - THE1C LTR MaLR -1 374 1 1003 309 73 24 chr21 16270964 16271136 -28636434 + L1MEc LINE L1 1905 2067 -4329 978 215 0 0 chr21 16271178 16271350 -28636220 + FRAM SINE Alu 1 171 -5 706 241 62 71 chr21 16271459 16271590 -28635980 + L1MEc LINE L1 2179 2310 -3905 2196 109 3 0 chr21 16271590 16271875 -28635695 + AluSg SINE Alu 3 288 -22 706 241 62 71 chr21 16271875 16272192 -28635378 + L1MEc LINE L1 2310 2623 -3592 2331 171 16 63 chr21 16272193 16272697 -28634873 + MLT2B1 LTR ERVL 1 480 -40 79 44 0 0 chr21 16272697 16272811 -28634759 + AT_rich Low_complexity Low_complexity 1 114 0 842 140 0 42 chr21 16272811 16272954 -28634616 - MLT1A1 LTR MaLR -2 363 227 2348 165 31 10 chr21 16273932 16274345 -28633225 + MSTB LTR MaLR 1 422 -4 1654 164 11 11 chr21 16274375 16274656 -28632914 - MLT1A1 LTR MaLR -2 363 83 1116 154 27 0 chr21 16274702 16274890 -28632680 + MLT2B1 LTR ERVL 1 193 -327 384 102 34 0 chr21 16274895 16274954 -28632616 - MLT1A1 LTR MaLR -273 92 32 267 364 160 29 chr21 16274970 16275352 -28632218 + L2 LINE L2 2456 2887 -427 182 0 64 85 chr21 16275567 16275614 -28631956 + (TAAAAA)n Simple_repeat Simple_repeat 6 51 0 538 282 85 64 chr21 16275859 16276189 -28631381 - L3b LINE CR1 -141 1442 1106 21 0 0 0 chr21 16278145 16278166 -28629404 + AT_rich Low_complexity Low_complexity 1 21 0 268 317 115 43 chr21 16278344 16278789 -28628781 + L2 LINE L2 1932 2408 -906 323 281 67 0 chr21 16278899 16278988 -28628582 + L2 LINE L2 3173 3267 -5 2383 68 0 3 chr21 16280640 16280955 -28626615 + AluY SINE Alu 1 314 0 2313 144 11 3 chr21 16281195 16281556 -28626014 - THE1B LTR MaLR 0 364 1 220 273 0 0 chr21 16282182 16282237 -28625333 + (CA)n Simple_repeat Simple_repeat 1 55 0 22 35 0 0 chr21 16282898 16282927 -28624643 + AT_rich Low_complexity Low_complexity 1 29 0 243 88 0 0 chr21 16283300 16283334 -28624236 + (TCC)n Simple_repeat Simple_repeat 3 36 0 222 362 43 21 chr21 16283499 16283593 -28623977 + L2 LINE L2 3133 3228 -44 22 0 0 0 chr21 16283767 16283789 -28623781 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 16283884 16283917 -28623653 + AT_rich Low_complexity Low_complexity 1 33 0 2063 120 10 0 chr21 16284750 16285042 -28622528 - AluSx SINE Alu -17 295 1 182 298 0 0 chr21 16285667 16285714 -28621856 - L2 LINE L2 -8 3305 3259 211 361 0 0 chr21 16286509 16286570 -28621000 + L2 LINE L2 3246 3306 -7 940 92 0 0 chr21 16288459 16288590 -28618980 - L1PB1 LINE L1 0 6151 6021 6993 58 5 0 chr21 16288598 16289491 -28618079 - L1PA7 LINE L1 -3 6151 5255 * 12618 85 12 5 chr21 16289489 16291248 -28616322 + L1PA7 LINE L1 3467 5239 -907 2332 80 6 16 chr21 16291264 16291576 -28615994 - AluY SINE Alu 0 311 3 1953 139 4 0 chr21 16292121 16292428 -28615142 - AluSg SINE Alu 0 308 1 246 119 75 0 chr21 16292778 16292845 -28614725 + (TA)n Simple_repeat Simple_repeat 1 72 0 716 115 0 0 chr21 16292904 16293008 -28614562 + AluSg1 SINE Alu 1 104 -205 1869 121 99 10 chr21 16293008 16293321 -28614249 + L1PA15 LINE L1 5825 6165 0 284 340 38 69 chr21 16293329 16293618 -28613952 + L2 LINE L2 2783 3061 -252 1307 158 10 0 chr21 16293948 16294157 -28613413 + AluSg1 SINE Alu 100 310 0 22 70 0 0 chr21 16294557 16294600 -28612970 + AT_rich Low_complexity Low_complexity 1 43 0 343 295 41 8 chr21 16294944 16295066 -28612504 - MIR SINE MIR -40 222 97 2197 83 20 20 chr21 16295217 16295518 -28612052 - AluSc SINE Alu -8 301 1 1941 92 0 11 chr21 16295539 16295799 -28611771 + AluSc SINE Alu 45 301 -8 2408 217 32 40 chr21 16295848 16296000 -28611570 - MLT1E2 LTR MaLR 0 626 474 2242 98 0 0 chr21 16296000 16296295 -28611275 + AluSg SINE Alu 1 295 -15 2468 71 3 0 chr21 16296295 16296605 -28610965 + AluY SINE Alu 1 311 0 2408 217 32 40 chr21 16296605 16297082 -28610488 - MLT1E2 LTR MaLR -150 476 1 297 263 273 50 chr21 16298743 16298941 -28608629 + MIR SINE MIR 20 261 -1 22 0 0 0 chr21 16299250 16299272 -28608298 + AT_rich Low_complexity Low_complexity 1 22 0 2025 99 0 65 chr21 16300552 16300875 -28606695 - AluSx SINE Alu -2 310 9 349 311 77 37 chr21 16300964 16301587 -28605983 - L1ME4a LINE L1 -181 5940 5295 3207 182 87 35 chr21 16301597 16302332 -28605238 - L1MA10 LINE L1 -9 6325 5553 398 291 30 20 chr21 16302895 16303098 -28604472 - L1ME4a LINE L1 -1486 4660 4456 1655 187 114 3 chr21 16303644 16303960 -28603610 - MLT1A1 LTR MaLR -11 354 4 200 213 0 0 chr21 16303988 16304035 -28603535 + T-rich Low_complexity Low_complexity 1 47 0 4814 73 3 0 chr21 16304035 16304665 -28602905 - L1PA7 LINE L1 -11 6143 5512 241 210 89 73 chr21 16304938 16305062 -28602508 + L3 LINE CR1 825 950 -627 5249 22 0 0 chr21 16306256 16306857 -28600713 - L1PA3 LINE L1 0 6155 5555 180 333 117 36 chr21 16307133 16307244 -28600326 + MIR3 SINE MIR 84 203 -5 35 24 0 0 chr21 16308028 16308070 -28599500 + AT_rich Low_complexity Low_complexity 1 42 0 243 222 12 37 chr21 16308072 16308153 -28599417 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 5842 158 22 25 chr21 16308536 16310575 -28596995 - L1MA4 LINE L1 0 7362 5309 225 0 0 0 chr21 16310577 16310602 -28596968 + (T)n Simple_repeat Simple_repeat 1 25 0 1351 114 10 0 chr21 16310618 16310811 -28596759 - AluSp SINE Alu -118 195 1 1342 164 36 29 chr21 16310812 16311068 -28596502 - L1MA4 LINE L1 -1904 5304 5044 4395 115 3 3 chr21 16311068 16311727 -28595843 - L1PA13 LINE L1 0 6163 5505 1314 207 17 0 chr21 16311727 16312075 -28595495 - L1MA4 LINE L1 -2754 4454 4101 * 3438 261 211 9 chr21 16312074 16313452 -28594118 - L1MA4 LINE L1 -5551 1658 2 197 235 139 70 chr21 16314226 16314341 -28593229 + L2 LINE L2 3127 3249 -23 340 335 68 31 chr21 16314544 16314705 -28592865 + L3 LINE CR1 1354 1520 -57 2505 104 0 30 chr21 16315382 16315746 -28591824 - THE1A LTR MaLR 0 355 3 11636 96 5 0 chr21 16315748 16317320 -28590250 - THE1A-int LTR MaLR 0 1580 1 2508 110 3 3 chr21 16317320 16317675 -28589895 - THE1A LTR MaLR 0 355 1 207 0 0 0 chr21 16319633 16319656 -28587914 + (T)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr21 16320297 16320333 -28587237 + AT_rich Low_complexity Low_complexity 1 36 0 2561 30 7 3 chr21 16320701 16321006 -28586564 + AluY SINE Alu 1 306 -5 63 26 0 0 chr21 16321226 16321303 -28586267 + AT_rich Low_complexity Low_complexity 1 77 0 288 238 25 25 chr21 16321303 16321383 -28586187 - MIR SINE MIR 0 262 183 1958 170 128 0 chr21 16321563 16321939 -28585631 - LTR64 LTR ERVK -29 529 106 213 339 74 25 chr21 16322563 16322684 -28584886 + MIR SINE MIR 70 196 -66 269 235 165 70 chr21 16322821 16322936 -28584634 - MIR SINE MIR -24 238 113 887 255 20 24 chr21 16322980 16323227 -28584343 + MIR SINE MIR 6 251 -11 1186 93 116 28 chr21 16323632 16323737 -28583833 + L1PA10 LINE L1 5934 6028 -140 2094 135 8 42 chr21 16323737 16324114 -28583456 + THE1B LTR MaLR 1 364 0 1186 93 116 28 chr21 16324114 16324224 -28583346 + L1PA10 LINE L1 6028 6168 0 225 325 83 8 chr21 16324533 16324653 -28582917 - L3b LINE CR1 -78 1505 1377 2399 158 62 58 chr21 16326006 16326168 -28581402 - L1MA10 LINE L1 0 6334 6174 210 37 0 0 chr21 16326168 16326195 -28581375 + (TG)n Simple_repeat Simple_repeat 2 28 0 2399 158 62 58 chr21 16326195 16326565 -28581005 - L1MA10 LINE L1 -160 6174 5800 25 51 0 0 chr21 16327323 16327362 -28580208 + AT_rich Low_complexity Low_complexity 1 39 0 2082 70 0 0 chr21 16327504 16327760 -28579810 + AluY SINE Alu 39 294 -17 1701 35 8 97 chr21 16327928 16328185 -28579385 + AluY SINE Alu 76 309 -2 300 170 75 0 chr21 16329805 16329858 -28577712 - L2 LINE L2 -5 3308 3252 228 354 16 39 chr21 16330399 16330526 -28577044 - MIR3 SINE MIR -71 137 14 30 45 0 0 chr21 16330933 16330977 -28576593 + AT_rich Low_complexity Low_complexity 1 44 0 789 231 18 0 chr21 16330985 16331154 -28576416 + LTR16C LTR ERVL 320 491 0 2410 87 0 0 chr21 16331495 16331794 -28575776 - AluSx SINE Alu -13 299 1 1871 116 3 14 chr21 16332063 16332348 -28575222 + L1PA16 LINE L1 5719 6000 -166 2156 196 49 0 chr21 16332348 16332756 -28574814 + MSTA LTR MaLR 1 428 0 1308 158 18 0 chr21 16332756 16332978 -28574592 + MSTA-int LTR MaLR 1 226 -1425 2140 136 125 10 chr21 16332978 16333361 -28574209 + MSTA LTR MaLR 1 427 -1 8183 184 18 52 chr21 16333362 16335070 -28572500 + MSTA-int LTR MaLR 1 1650 -1 1120 132 162 17 chr21 16335071 16335306 -28572264 + MSTA LTR MaLR 1 269 -159 4676 190 16 11 chr21 16335306 16336163 -28571407 + MSTA-int LTR MaLR 790 1651 0 2361 182 44 0 chr21 16336165 16336572 -28570998 + MSTA LTR MaLR 3 427 -1 341 102 0 0 chr21 16336604 16336653 -28570917 - MADE1 DNA Mariner -30 50 2 347 363 73 5 chr21 16336829 16337033 -28570537 + MIR SINE MIR 44 261 -1 1628 128 28 7 chr21 16337196 16337486 -28570084 + L1MA3 LINE L1 6010 6305 0 21 57 0 0 chr21 16337511 16337546 -28570024 + AT_rich Low_complexity Low_complexity 1 35 0 547 308 97 28 chr21 16337567 16337856 -28569714 - MLT1I LTR MaLR -28 381 73 608 198 85 55 chr21 16338520 16338682 -28568888 + MLT1B LTR MaLR 1 146 -228 740 145 8 8 chr21 16338682 16338799 -28568771 + FLAM_C SINE Alu 1 117 -16 608 198 85 55 chr21 16338799 16338843 -28568727 + MLT1B LTR MaLR 146 187 -187 534 314 84 4 chr21 16338944 16339170 -28568400 - L2 LINE L2 -1061 2253 2010 709 194 0 87 chr21 16339732 16339928 -28567642 + MLT1A2 LTR MaLR 1 179 -195 1113 282 127 22 chr21 16339941 16340398 -28567172 - MLT1D LTR MaLR 0 505 1 24 32 0 0 chr21 16343443 16343474 -28564096 + AT_rich Low_complexity Low_complexity 1 31 0 2055 153 8 33 chr21 16343490 16343888 -28563682 - MLT1B LTR MaLR -2 388 1 391 271 90 15 chr21 16343889 16344022 -28563548 + L2 LINE L2 3171 3313 0 1558 204 14 3 chr21 16344855 16345140 -28562430 + AluJo SINE Alu 1 288 -24 1630 211 14 27 chr21 16345537 16345907 -28561663 + MLT1A1 LTR MaLR 1 365 0 272 26 0 26 chr21 16346069 16346107 -28561463 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 501 62 0 0 chr21 16346128 16346193 -28561377 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 371 259 37 74 chr21 16346221 16346275 -28561295 + L2 LINE L2 3176 3230 -83 2368 97 0 6 chr21 16346275 16346586 -28560984 + AluSq SINE Alu 1 309 -4 371 259 37 74 chr21 16346586 16346666 -28560904 + L2 LINE L2 3230 3305 -8 1153 259 86 70 chr21 16347878 16348432 -28559138 + MLT1F1 LTR MaLR 1 564 -3 281 225 0 14 chr21 16348434 16348505 -28559065 + LTR67 LTR ERVL 474 543 -14 205 208 139 56 chr21 16348752 16348824 -28558746 + L3 LINE CR1 373 450 -1127 1372 157 35 7 chr21 16349927 16350213 -28557357 + L1MA8 LINE L1 5993 6286 -5 718 289 106 25 chr21 16350280 16350564 -28557006 + ERVL LTR ERVL 2291 2597 -3167 681 317 163 12 chr21 16350734 16351278 -28556292 - L2 LINE L2 0 3313 2690 4475 265 62 8 chr21 16352974 16354524 -28553046 - L1MEc LINE L1 -4577 1819 108 302 289 55 0 chr21 16355756 16355884 -28551686 - L1MEc LINE L1 -4856 1540 1406 251 337 66 33 chr21 16355991 16356172 -28551398 + HAL1b LINE L1 406 592 -756 27 49 0 0 chr21 16357642 16357683 -28549887 + AT_rich Low_complexity Low_complexity 1 41 0 393 310 54 16 chr21 16359089 16359273 -28548297 + MIR SINE MIR 18 208 -54 22 0 0 0 chr21 16359818 16359840 -28547730 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr21 16360027 16360055 -28547515 + AT_rich Low_complexity Low_complexity 1 28 0 536 335 5 11 chr21 16360282 16360467 -28547103 - MIR3 SINE MIR -5 203 20 4471 196 70 22 chr21 16361057 16361577 -28545993 + MER45B DNA AcHobo 1 495 -1086 1956 106 80 40 chr21 16361577 16361927 -28545643 - THE1B LTR MaLR 0 364 1 4471 196 70 22 chr21 16361927 16362399 -28545171 + MER45B DNA AcHobo 495 1040 0 605 354 78 16 chr21 16362715 16363085 -28544485 - L2 LINE L2 0 3313 2921 1058 244 82 53 chr21 16363094 16363498 -28544072 + MLT1C LTR MaLR 1 421 -46 1368 180 32 122 chr21 16363498 16363899 -28543671 + MLT1A1 LTR MaLR 1 365 0 1058 244 82 53 chr21 16363899 16363948 -28543622 + MLT1C LTR MaLR 421 467 0 558 333 118 52 chr21 16363948 16364531 -28543039 - L2 LINE L2 -398 2916 2295 23 0 0 0 chr21 16365275 16365298 -28542272 + AT_rich Low_complexity Low_complexity 1 23 0 2162 155 18 25 chr21 16367355 16367748 -28539822 - MLT1B LTR MaLR 0 390 1 351 303 85 38 chr21 16367773 16367984 -28539586 - L2 LINE L2 -18 3295 3075 679 332 86 49 chr21 16368066 16368719 -28538851 - L2 LINE L2 -400 2914 2238 3516 39 0 2 chr21 16368789 16369220 -28538350 - L1PA7 LINE L1 0 6154 5725 21 0 0 0 chr21 16369264 16369285 -28538285 + AT_rich Low_complexity Low_complexity 1 21 0 412 289 77 26 chr21 16370136 16370292 -28537278 - MIR3 SINE MIR -30 178 15 325 174 20 60 chr21 16371715 16371864 -28535706 + (TA)n Simple_repeat Simple_repeat 1 143 0 270 257 0 0 chr21 16371995 16372065 -28535505 + (TA)n Simple_repeat Simple_repeat 1 70 0 1495 164 46 7 chr21 16372261 16372542 -28535028 + L1MA7 LINE L1 5776 6067 -224 736 145 72 20 chr21 16372543 16372695 -28534875 + L1MA7 LINE L1 6127 6286 -5 225 403 22 17 chr21 16372762 16372943 -28534627 + L2 LINE L2 870 1051 -2263 310 239 174 52 chr21 16373109 16373264 -28534306 - L1ME3A LINE L1 -66 6104 5931 308 292 36 36 chr21 16373777 16373914 -28533656 - HAL1 LINE L1 -600 1907 1771 646 258 11 0 chr21 16373935 16374121 -28533449 - HAL1 LINE L1 -810 1697 1510 40 79 0 0 chr21 16374160 16374249 -28533321 + AT_rich Low_complexity Low_complexity 1 89 0 821 254 69 40 chr21 16374249 16375074 -28532496 - HAL1 LINE L1 -1050 1457 557 1713 153 28 22 chr21 16375197 16375517 -28532053 - L1MC1 LINE L1 -8 6325 6004 1635 158 7 3 chr21 16375702 16376005 -28531565 - L1MA5 LINE L1 -10 6290 5987 3251 96 38 8 chr21 16376005 16376505 -28531065 + L1MA5 LINE L1 5435 5949 -351 295 343 144 24 chr21 16376511 16376852 -28530718 + L2 LINE L2 1875 2256 -1058 1257 235 35 61 chr21 16376852 16377247 -28530323 + MLT1B LTR MaLR 1 385 -5 1364 86 109 5 chr21 16377359 16377580 -28529990 - L1PA11 LINE L1 0 6174 5931 542 121 0 0 chr21 16377582 16377665 -28529905 + L1PA11 LINE L1 5867 5949 -219 474 349 53 19 chr21 16377706 16378024 -28529546 + L2 LINE L2 2377 2705 -609 1905 144 18 0 chr21 16378033 16378337 -28529233 + AluJb SINE Alu 1 309 0 1287 161 0 69 chr21 16380126 16380348 -28527222 - AluSx SINE Alu -70 242 39 2222 103 0 0 chr21 16380348 16380638 -28526932 + AluSx SINE Alu 5 294 -18 1287 161 0 69 chr21 16380638 16380675 -28526895 - AluSx SINE Alu -273 39 1 204 206 0 0 chr21 16380736 16380770 -28526800 + polypurine Low_complexity Low_complexity 2 35 0 212 250 0 45 chr21 16381698 16381786 -28525784 + CT-rich Low_complexity Low_complexity 1 84 0 316 258 62 39 chr21 16382132 16382260 -28525310 + L2 LINE L2 3182 3312 -1 919 257 18 37 chr21 16382337 16382609 -28524961 + MLT2B1 LTR ERVL 198 464 -56 253 137 78 0 chr21 16382669 16382720 -28524850 + MLT2B1 LTR ERVL 461 515 0 259 314 23 0 chr21 16383153 16383239 -28524331 + L2 LINE L2 3185 3272 0 2050 147 10 70 chr21 16384500 16384915 -28522655 + MLT1B LTR MaLR 1 390 0 2174 182 34 43 chr21 16385075 16385543 -28522027 + MLT1C LTR MaLR 3 466 -1 23 0 0 0 chr21 16385922 16385945 -28521625 + AT_rich Low_complexity Low_complexity 1 23 0 2298 108 0 0 chr21 16386050 16386357 -28521213 - AluSq SINE Alu -6 307 1 790 250 145 4 chr21 16386687 16386935 -28520635 - LTR40b LTR ERVL -2 460 178 209 83 28 0 chr21 16387382 16387418 -28520152 + (TA)n Simple_repeat Simple_repeat 1 37 0 918 139 0 0 chr21 16387636 16387765 -28519805 - AluJo SINE Alu -178 134 6 206 200 0 0 chr21 16387777 16387812 -28519758 + polypyrimidine Low_complexity Low_complexity 2 36 0 518 108 12 0 chr21 16387812 16387895 -28519675 + (TTCCC)n Simple_repeat Simple_repeat 1 84 0 232 204 19 0 chr21 16387901 16387955 -28519615 + T-rich Low_complexity Low_complexity 5 59 0 798 83 58 0 chr21 16387974 16388094 -28519476 + L1PB1 LINE L1 6022 6148 -3 789 221 136 0 chr21 16388366 16388579 -28518991 - LTR40a LTR ERVL -275 244 3 2102 131 3 0 chr21 16389007 16389305 -28518265 - AluSg SINE Alu -11 299 1 201 60 0 90 chr21 16389563 16389630 -28517940 + (CATTT)n Simple_repeat Simple_repeat 1 61 0 29 60 0 0 chr21 16391746 16391796 -28515774 + AT_rich Low_complexity Low_complexity 1 50 0 481 283 26 7 chr21 16393307 16393459 -28514111 + MIR SINE MIR 30 184 -78 1693 246 3 6 chr21 16393603 16393969 -28513601 + MLT1A1 LTR MaLR 1 365 0 2569 186 96 14 chr21 16393969 16394614 -28512956 + MLT1A1-int LTR MaLR 1 770 -965 2218 206 18 125 chr21 16394613 16395343 -28512227 + MLT1A1-int LTR MaLR 1083 1734 -1 * 1971 167 28 31 chr21 16395345 16395705 -28511865 + MLT1A1 LTR MaLR 2 360 -5 455 270 40 36 chr21 16395840 16395981 -28511589 + MIR SINE MIR 2 145 -63 2611 93 3 35 chr21 16395981 16396357 -28511213 - THE1B LTR MaLR 0 364 1 455 270 40 36 chr21 16396357 16396371 -28511199 + MIR SINE MIR 145 157 -51 572 277 75 0 chr21 16396638 16396826 -28510744 - MIR SINE MIR -56 206 5 1855 170 27 16 chr21 16396839 16397215 -28510355 - L1PB4 LINE L1 0 7218 6839 188 101 50 59 chr21 16397221 16397340 -28510230 + (TA)n Simple_repeat Simple_repeat 1 118 0 253 165 46 46 chr21 16397355 16397464 -28510106 + (TA)n Simple_repeat Simple_repeat 1 109 0 717 177 4 9 chr21 16397468 16397608 -28509962 - L1P2 LINE L1 -348 5806 5664 303 247 0 0 chr21 16397589 16397662 -28509908 + L1P4 LINE L1 5664 5736 -432 * 7062 195 10 16 chr21 16397706 16399259 -28508311 - L1PB4 LINE L1 -512 6706 5167 2315 109 0 0 chr21 16399259 16399562 -28508008 + AluSq SINE Alu 1 303 -10 7062 195 10 16 chr21 16399562 16399878 -28507692 - L1PB4 LINE L1 -2051 5167 4851 1785 159 133 18 chr21 16399878 16400262 -28507308 + MSTA LTR MaLR 1 428 0 9232 140 27 36 chr21 16400264 16401845 -28505725 + MSTA-int LTR MaLR 3 1569 -11 1237 181 107 22 chr21 16401846 16402116 -28505454 + MSTA LTR MaLR 3 295 -133 7276 251 56 32 chr21 16402146 16402781 -28504789 - L1PB4 LINE L1 -3012 4196 3578 369 0 0 0 chr21 16402781 16402822 -28504748 + (TG)n Simple_repeat Simple_repeat 1 41 0 7276 251 56 32 chr21 16402822 16405653 -28501917 - L1PB4 LINE L1 -3630 3578 594 1870 142 144 21 chr21 16405653 16406034 -28501536 - MSTA LTR MaLR 0 428 1 7276 251 56 32 chr21 16406034 16406624 -28500946 - L1PB4 LINE L1 -6614 594 20 23 54 0 0 chr21 16407156 16407193 -28500377 + AT_rich Low_complexity Low_complexity 1 37 0 259 295 82 41 chr21 16407516 16407638 -28499932 + HAL1 LINE L1 4 130 -2377 407 319 54 28 chr21 16408250 16408607 -28498963 + HAL1 LINE L1 841 1263 -1244 14528 174 43 17 chr21 16408639 16412706 -28494864 + L1MA2 LINE L1 17 3980 -3743 2100 150 0 0 chr21 16412706 16413012 -28494558 + AluSx SINE Alu 3 308 -4 14528 174 43 17 chr21 16413012 16413830 -28493740 + L1MA2 LINE L1 3980 4776 -2947 5215 156 38 30 chr21 16413830 16414893 -28492677 + MER11C LTR ERVK 1 1071 0 14528 174 43 17 chr21 16414893 16417252 -28490318 + L1MA2 LINE L1 4776 7723 0 34 24 0 0 chr21 16417253 16417294 -28490276 + AT_rich Low_complexity Low_complexity 1 41 0 445 317 103 12 chr21 16417332 16417761 -28489809 + HAL1 LINE L1 1343 1810 -697 306 230 62 101 chr21 16417832 16418041 -28489529 + HAL1 LINE L1 1948 2148 -359 269 291 131 35 chr21 16418260 16418573 -28488997 + HAL1 LINE L1 2165 2507 0 194 377 0 0 chr21 16418754 16418836 -28488734 + MIR3 SINE MIR 77 159 -49 2210 120 22 27 chr21 16418871 16419237 -28488333 + THE1B LTR MaLR 1 364 0 1652 289 51 8 chr21 16421298 16421786 -28485784 - MLT1H1 LTR MaLR -2 553 45 231 300 154 18 chr21 16421798 16421908 -28485662 + MIR SINE MIR 111 235 -27 1935 124 79 25 chr21 16422050 16422404 -28485166 + THE1C LTR MaLR 1 373 -2 531 284 95 93 chr21 16422832 16423370 -28484200 + LTR67 LTR ERVL 11 549 -8 461 261 39 20 chr21 16423430 16423583 -28483987 + MER5B DNA MER1_type 1 156 -22 1222 322 86 64 chr21 16423587 16424348 -28483222 + ERVL LTR ERVL 1255 2017 -3637 2318 97 3 3 chr21 16424348 16424659 -28482911 - AluY SINE Alu 0 311 1 1222 322 86 64 chr21 16424659 16425246 -28482324 + ERVL LTR ERVL 2017 2590 -3064 256 279 12 23 chr21 16425519 16425605 -28481965 + ERVL LTR ERVL 3776 3860 -1904 269 258 34 11 chr21 16425713 16425802 -28481768 + ERVL LTR ERVL 3962 4052 -1433 338 338 58 0 chr21 16425849 16425988 -28481582 + ERVL LTR ERVL 4355 4501 -1153 269 301 21 32 chr21 16426260 16426353 -28481217 + ERVL LTR ERVL 4859 4950 -535 315 0 0 0 chr21 16426702 16426737 -28480833 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 16427556 16427577 -28479993 + AT_rich Low_complexity Low_complexity 1 21 0 646 261 88 65 chr21 16428159 16428465 -28479105 + MLT1H1 LTR MaLR 25 379 -216 207 245 160 43 chr21 16429854 16429948 -28477622 - L2 LINE L2 0 3272 3168 7104 121 17 6 chr21 16430104 16431246 -28476324 + L1MA1 LINE L1 4467 5639 -663 2005 131 147 26 chr21 16431246 16431627 -28475943 - MSTA LTR MaLR 0 428 2 7104 121 17 6 chr21 16431627 16432299 -28475271 + L1MA1 LINE L1 5639 6302 0 1902 102 69 7 chr21 16432325 16432599 -28474971 - AluSq SINE Alu -21 292 2 489 252 182 51 chr21 16432712 16432948 -28474622 + MLT1H LTR MaLR 326 546 -3 286 363 84 23 chr21 16433484 16433746 -28473824 + L2 LINE L2 211 488 -2826 260 324 0 0 chr21 16435439 16435513 -28472057 - L2 LINE L2 -63 3209 3136 284 30 0 91 chr21 16435544 16435610 -28471960 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 195 303 11 67 chr21 16436061 16436150 -28471420 - L2 LINE L2 -1 3312 3229 508 325 34 5 chr21 16436936 16437142 -28470428 - L1ME1 LINE L1 -5 6161 5950 340 299 194 0 chr21 16437631 16437765 -28469805 - MIR3 SINE MIR -6 202 43 203 290 14 0 chr21 16438482 16438551 -28469019 + (TA)n Simple_repeat Simple_repeat 2 71 0 730 295 126 28 chr21 16438910 16439054 -28468516 + L2 LINE L2 2059 2188 -1126 1331 94 133 0 chr21 16439054 16439257 -28468313 + MER30 DNA MER1_type 1 230 0 730 295 126 28 chr21 16439257 16439502 -28468068 + L2 LINE L2 2188 2486 -828 202 349 47 8 chr21 16439601 16439730 -28467840 + L2 LINE L2 2715 2848 -466 1515 172 20 40 chr21 16441073 16441282 -28466288 + LTR53 LTR ERVL 1 204 -315 1275 205 72 61 chr21 16441282 16441673 -28465897 - MSTD LTR MaLR 0 396 2 1515 172 20 40 chr21 16441673 16441765 -28465805 + LTR53 LTR ERVL 204 296 -223 1433 72 6 6 chr21 16441767 16441947 -28465623 + AluSq SINE Alu 3 182 -131 1005 246 67 0 chr21 16441957 16442181 -28465389 + LTR53 LTR ERVL 281 519 0 352 281 156 62 chr21 16442642 16442866 -28464704 - MIR SINE MIR 0 262 18 200 351 65 45 chr21 16442942 16443096 -28464474 + MIR SINE MIR 62 218 -44 254 269 98 72 chr21 16443141 16443334 -28464236 - L2 LINE L2 -2 3311 3114 237 22 0 67 chr21 16443430 16443475 -28464095 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 1052 109 0 0 chr21 16443475 16443613 -28463957 - AluSg/x SINE Alu -27 283 146 2221 122 9 212 chr21 16443707 16443899 -28463671 + Tigger1 DNA MER2_type 1900 2129 -289 623 206 79 16 chr21 16443899 16444025 -28463545 + FRAM SINE Alu 20 153 -23 2221 122 9 212 chr21 16444025 16444357 -28463213 + Tigger1 DNA MER2_type 2129 2417 -1 651 134 0 55 chr21 16444359 16444486 -28463084 - L1 LINE L1 -1542 4604 4485 535 186 25 103 chr21 16445007 16445211 -28462359 + L1MB7 LINE L1 5989 6176 -8 476 274 15 69 chr21 16445214 16445442 -28462128 + L1MC5 LINE L1 6721 6963 -845 261 0 0 0 chr21 16445537 16445566 -28462004 + (T)n Simple_repeat Simple_repeat 1 29 0 644 223 23 0 chr21 16445567 16445697 -28461873 - MLT1E LTR MaLR -47 546 414 989 198 20 122 chr21 16445722 16445883 -28461687 + L1M4c LINE L1 1221 1330 -5054 2448 65 13 3 chr21 16445883 16446191 -28461379 + AluY SINE Alu 1 311 0 989 198 20 122 chr21 16446191 16446373 -28461197 + L1M4c LINE L1 1330 1529 -4855 27 49 0 0 chr21 16446909 16446950 -28460620 + AT_rich Low_complexity Low_complexity 1 41 0 414 39 0 0 chr21 16447757 16447809 -28459761 + (TG)n Simple_repeat Simple_repeat 1 52 0 591 277 25 0 chr21 16448029 16448188 -28459382 + MIR SINE MIR 100 262 0 896 190 48 70 chr21 16448776 16449200 -28458370 - MLT1B LTR MaLR -2 384 5 280 375 9 9 chr21 16449564 16449676 -28457894 + L2 LINE L2 2588 2699 -615 612 107 29 0 chr21 16449945 16450048 -28457522 - L1PA4 LINE L1 0 6155 6050 293 219 78 0 chr21 16450957 16451021 -28456549 + MLT1I LTR MaLR 107 175 -234 1324 255 111 24 chr21 16451357 16451816 -28455754 + LTR40a LTR ERVL 19 517 -2 203 61 30 0 chr21 16451853 16451886 -28455684 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2218 127 0 0 chr21 16453691 16453998 -28453572 + AluSc SINE Alu 1 307 -2 234 82 0 82 chr21 16454565 16454626 -28452944 - LTR66 LTR ERVL -157 453 398 187 211 14 14 chr21 16454626 16454697 -28452873 + (CATA)n Simple_repeat Simple_repeat 2 72 0 207 333 0 0 chr21 16456917 16456989 -28450581 + (TG)n Simple_repeat Simple_repeat 2 73 0 250 302 62 42 chr21 16458074 16458170 -28449400 + MIR3 SINE MIR 75 172 -36 30 59 0 0 chr21 16459133 16459184 -28448386 + AT_rich Low_complexity Low_complexity 1 51 0 828 303 29 0 chr21 16461366 16461607 -28445963 + MIR SINE MIR 15 262 0 22 35 0 0 chr21 16462102 16462131 -28445439 + AT_rich Low_complexity Low_complexity 1 29 0 2521 40 3 3 chr21 16463019 16463322 -28444248 + AluY SINE Alu 1 303 -8 2132 85 3 33 chr21 16463806 16464130 -28443440 - AluY SINE Alu 0 311 12 2209 156 5 13 chr21 16464187 16464565 -28443005 + THE1C LTR MaLR 1 375 0 839 173 7 27 chr21 16465470 16465620 -28441950 - MER58B DNA MER1_type 0 341 195 382 329 64 30 chr21 16465640 16465874 -28441696 + MLT1L LTR MaLR 22 263 -352 382 206 0 0 chr21 16467649 16467722 -28439848 - MLT1A1 LTR MaLR 0 365 293 3016 128 17 12 chr21 16467727 16468322 -28439248 - MER4E LTR ERV1 0 779 1 651 265 15 20 chr21 16468324 16468528 -28439042 - MLT1A1 LTR MaLR -76 289 87 3444 208 66 63 chr21 16468535 16468669 -28438901 + MER21A LTR ERV1 30 162 -769 2309 101 3 0 chr21 16468669 16468977 -28438593 + AluSg1 SINE Alu 1 309 0 3444 208 66 63 chr21 16468977 16469735 -28437835 + MER21A LTR ERV1 162 925 -6 500 151 70 0 chr21 16469744 16469830 -28437740 - MLT1A1 LTR MaLR -278 96 5 417 20 0 0 chr21 16469853 16469903 -28437667 + (TG)n Simple_repeat Simple_repeat 1 50 0 1460 247 84 18 chr21 16470159 16470684 -28436886 - MLT1E LTR MaLR -2 591 1 1715 243 7 41 chr21 16470921 16471358 -28436212 - MLT1E2 LTR MaLR 0 626 205 276 264 49 62 chr21 16471334 16471478 -28436092 - MLT1E2 LTR MaLR -372 254 113 * 482 218 24 24 chr21 16471481 16471605 -28435965 + MER34 LTR ERV1 10 133 -409 527 246 146 69 chr21 16471656 16471944 -28435626 - MLT1J1 LTR MaLR -8 438 129 274 220 0 0 chr21 16471944 16471994 -28435576 - MLT1J2 LTR MaLR -371 79 30 374 235 8 92 chr21 16472328 16472447 -28435123 + LTR48 LTR ERV1 672 780 -7 353 160 223 53 chr21 16472506 16472600 -28434970 - MLT1J1 LTR MaLR -514 110 1 427 226 0 20 chr21 16474165 16474267 -28433303 - L1 LINE L1 -985 5161 5062 205 171 0 0 chr21 16474268 16474303 -28433267 + (CATA)n Simple_repeat Simple_repeat 2 36 0 44 35 0 0 chr21 16474316 16474374 -28433196 + AT_rich Low_complexity Low_complexity 1 58 0 1125 250 132 97 chr21 16474561 16475120 -28432450 - MLT1G LTR MaLR -14 576 3 2353 100 0 0 chr21 16476420 16476731 -28430839 + AluSq SINE Alu 1 311 -2 763 155 171 36 chr21 16476930 16477123 -28430447 + MER20 DNA MER1_type 1 219 0 1461 245 55 36 chr21 16477460 16477954 -28429616 + MLT1D LTR MaLR 3 505 0 471 349 29 0 chr21 16477967 16478139 -28429431 - MIR SINE MIR -67 195 19 6262 82 19 5 chr21 16478197 16479083 -28428487 - L1PA13 LINE L1 0 6163 5265 530 201 43 173 chr21 16479764 16480018 -28427552 - L1ME3A LINE L1 -12 6158 5938 1592 182 4 4 chr21 16480018 16480282 -28427288 - MLT1C LTR MaLR 0 467 204 305 47 23 0 chr21 16480282 16480325 -28427245 + (TC)n Simple_repeat Simple_repeat 2 45 0 1041 198 0 14 chr21 16480340 16480547 -28427023 - MLT1C LTR MaLR -263 204 1 325 322 5 106 chr21 16480548 16480674 -28426896 - L1ME3A LINE L1 -221 5941 5841 704 229 0 0 chr21 16480674 16480805 -28426765 - FLAM_A SINE Alu -1 132 2 325 322 5 106 chr21 16480805 16480877 -28426693 - L1ME3A LINE L1 -321 5841 5763 436 223 18 9 chr21 16480920 16481032 -28426538 - L1ME3A LINE L1 -394 5776 5664 22 56 0 0 chr21 16481439 16481475 -28426095 + AT_rich Low_complexity Low_complexity 1 36 0 490 287 122 18 chr21 16482340 16482504 -28425066 + MIR SINE MIR 12 192 -70 704 275 71 93 chr21 16482506 16482873 -28424697 + L2 LINE L2 2219 2578 -736 896 241 38 5 chr21 16482873 16483085 -28424485 - MER20 DNA MER1_type 0 219 1 704 275 71 93 chr21 16483085 16483113 -28424457 + L2 LINE L2 2578 2605 -709 595 217 51 0 chr21 16483291 16483429 -28424141 - MLT1G1 LTR MaLR -9 586 442 626 332 39 36 chr21 16483443 16483723 -28423847 - MLT1G1 LTR MaLR -314 281 1 1535 241 111 64 chr21 16483782 16484405 -28423165 - MLT1E1 LTR MaLR 0 654 3 401 295 137 66 chr21 16484514 16484996 -28422574 - L1M4 LINE L1 -2267 3879 3364 405 0 0 0 chr21 16485078 16485123 -28422447 + (TG)n Simple_repeat Simple_repeat 2 46 0 2395 77 0 0 chr21 16485176 16485475 -28422095 - AluY SINE Alu -12 299 1 251 192 39 77 chr21 16485576 16485654 -28421916 - MIR SINE MIR -71 191 117 2104 172 42 36 chr21 16485658 16486202 -28421368 + MLT2A2 LTR ERVL 1 554 0 326 288 25 0 chr21 16486206 16486286 -28421284 - MIR SINE MIR -149 113 32 1823 178 37 12 chr21 16486293 16486866 -28420704 - L1M4 LINE L1 -669 5505 4917 1237 261 60 7 chr21 16486868 16487305 -28420265 - L1M4 LINE L1 -2475 3671 3212 950 256 75 25 chr21 16487291 16488934 -28418636 - L1M4 LINE L1 -1318 5326 1856 * 4628 214 53 47 chr21 16488941 16489055 -28418515 - L1M4 LINE L1 -5192 1350 1238 2738 22 0 3 chr21 16489055 16489373 -28418197 - AluYb8 SINE Alu -1 317 1 4628 214 53 47 chr21 16489373 16490586 -28416984 - L1M4 LINE L1 -5304 1238 16 1849 241 56 76 chr21 16490606 16491212 -28416358 - MLT1E1 LTR MaLR -4 650 57 426 79 0 0 chr21 16491965 16492028 -28415542 + (TA)n Simple_repeat Simple_repeat 2 64 0 550 292 84 0 chr21 16492749 16492951 -28414619 + MIR SINE MIR 3 221 -41 399 312 115 27 chr21 16493163 16493186 -28414384 - L2 LINE L2 -64 3249 3229 2139 100 7 3 chr21 16493186 16493477 -28414093 + AluSg SINE Alu 9 300 -10 399 312 115 27 chr21 16493477 16493748 -28413822 - L2 LINE L2 -84 3229 2929 668 319 86 6 chr21 16493812 16494138 -28413432 - L2 LINE L2 -938 2376 2025 29 28 0 0 chr21 16494912 16494948 -28412622 + AT_rich Low_complexity Low_complexity 1 36 0 270 341 79 42 chr21 16495046 16495260 -28412310 - MIR SINE MIR -21 241 20 2466 150 18 23 chr21 16496270 16496704 -28410866 - Tigger2a DNA MER2_type 0 434 3 535 277 61 7 chr21 16497851 16497999 -28409571 + MIR SINE MIR 107 262 0 1661 179 31 0 chr21 16498018 16498308 -28409262 - AluJb SINE Alu -11 301 3 472 293 120 22 chr21 16498634 16498859 -28408711 + MIR SINE MIR 3 249 -13 2517 187 52 61 chr21 16499113 16499257 -28408313 - L1MB8 LINE L1 -15 6163 6019 2228 67 40 0 chr21 16499257 16499556 -28408014 - AluY SINE Alu 0 311 1 2517 187 52 61 chr21 16499556 16500052 -28407518 - L1MB8 LINE L1 -159 6019 5529 187 252 30 114 chr21 16500101 16500232 -28407338 - MIR SINE MIR -123 139 20 764 163 35 0 chr21 16500270 16500411 -28407159 + L1MA9 LINE L1 6167 6312 0 3873 61 2 2 chr21 16502890 16503396 -28404174 - L1PA7 LINE L1 0 6154 5649 268 197 26 26 chr21 16503448 16503524 -28404046 - MLT1K LTR MaLR 0 588 513 1882 191 22 25 chr21 16503526 16503892 -28403678 - MLT1A1 LTR MaLR 0 365 1 318 317 183 17 chr21 16503967 16504197 -28403373 - MLT1K LTR MaLR -168 420 153 26 0 0 0 chr21 16504262 16504288 -28403282 + AT_rich Low_complexity Low_complexity 1 26 0 1073 325 189 23 chr21 16505384 16506298 -28401272 + L2 LINE L2 1307 2372 -942 2034 156 58 67 chr21 16506606 16507055 -28400515 - MER65A LTR ERV1 0 445 1 5203 238 98 51 chr21 16507182 16507496 -28400074 + Charlie6 DNA MER1_type 54 352 -3148 2394 92 0 0 chr21 16507496 16507801 -28399769 - AluSx SINE Alu -7 305 1 5203 238 98 51 chr21 16507801 16509341 -28398229 + Charlie6 DNA MER1_type 352 1995 -1505 870 215 5 5 chr21 16509343 16509543 -28398027 - L1MB8 LINE L1 -692 5476 5277 1356 172 0 19 chr21 16509546 16509807 -28397763 + L1MB1 LINE L1 5873 6128 -40 4399 209 115 31 chr21 16509814 16511205 -28396365 + Charlie6 DNA MER1_type 1993 3500 0 2125 107 0 20 chr21 16511280 16511632 -28395938 + AluSg SINE Alu 1 310 0 514 285 53 108 chr21 16511747 16512497 -28395073 + L2 LINE L2 2379 3169 -144 842 158 27 22 chr21 16512497 16512680 -28394890 - L1MA8 LINE L1 -12 6279 6096 2413 130 14 69 chr21 16512689 16512895 -28394675 - L1MA8 LINE L1 -2 6289 6073 378 0 0 0 chr21 16512895 16512937 -28394633 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2232 85 0 0 chr21 16512937 16513220 -28394350 - AluY SINE Alu -28 283 1 2413 130 14 69 chr21 16513220 16513505 -28394065 - L1MA8 LINE L1 -216 6075 5824 514 285 53 108 chr21 16513505 16513715 -28393855 + L2 LINE L2 3177 3295 -18 334 194 14 14 chr21 16513883 16513955 -28393615 + MIR3 SINE MIR 119 190 -18 1760 146 40 63 chr21 16514624 16515021 -28392549 + L1MA9 LINE L1 5923 6310 -2 22 56 0 0 chr21 16515062 16515098 -28392472 + AT_rich Low_complexity Low_complexity 1 36 0 1945 133 3 16 chr21 16515195 16515503 -28392067 + AluSx SINE Alu 1 304 -8 3727 196 56 16 chr21 16517176 16518013 -28389557 - L1MC2 LINE L1 -11 6333 5463 1423 231 107 5 chr21 16518543 16518955 -28388615 + MLT1C LTR MaLR 6 459 -8 23 0 0 0 chr21 16519186 16519209 -28388361 + AT_rich Low_complexity Low_complexity 1 23 0 2419 66 0 3 chr21 16519667 16519971 -28387599 - AluY SINE Alu -8 303 1 980 210 101 116 chr21 16520154 16520550 -28387020 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr21 16521333 16521354 -28386216 + AT_rich Low_complexity Low_complexity 1 21 0 2216 160 20 2 chr21 16522935 16523329 -28384241 - L1 LINE L1 -1972 5593 5193 1047 242 14 0 chr21 16523321 16523602 -28383968 - L1 LINE L1 -2990 4575 4291 * 1195 130 0 0 chr21 16523604 16523773 -28383797 - AluSg/x SINE Alu -13 299 131 14673 145 32 33 chr21 16523773 16524730 -28382840 - L1 LINE L1 -3267 4298 3342 320 0 25 0 chr21 16524730 16524770 -28382800 + (TTA)n Simple_repeat Simple_repeat 3 43 0 3130 39 3 0 chr21 16524770 16525151 -28382419 - L1PA6 LINE L1 -18 6136 5755 14673 145 32 33 chr21 16525151 16528440 -28379130 - L1 LINE L1 -4221 3344 18 955 284 148 52 chr21 16528440 16529008 -28378562 + L2 LINE L2 2436 3118 -195 294 50 0 0 chr21 16529008 16529048 -28378522 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 284 148 52 chr21 16529048 16529265 -28378305 + L2 LINE L2 3118 3313 0 482 229 0 0 chr21 16529585 16529681 -28377889 - MER3 DNA MER1_type -103 106 11 26 0 0 0 chr21 16530358 16530384 -28377186 + AT_rich Low_complexity Low_complexity 1 26 0 216 376 38 15 chr21 16532214 16532347 -28375223 + L2 LINE L2 3170 3305 -8 21 0 0 0 chr21 16532907 16532928 -28374642 + AT_rich Low_complexity Low_complexity 1 21 0 280 337 72 28 chr21 16533251 16533432 -28374138 + MLT1K LTR MaLR 359 547 -41 222 312 0 0 chr21 16533922 16533999 -28373571 + CT-rich Low_complexity Low_complexity 3 79 0 3774 170 10 10 chr21 16534015 16534476 -28373094 - L1MA4 LINE L1 -11 6991 6528 1987 127 49 35 chr21 16534476 16534845 -28372725 - THE1C LTR MaLR -1 374 1 3774 170 10 10 chr21 16534845 16535089 -28372481 - L1MA4 LINE L1 -473 6529 6286 2283 147 3 3 chr21 16535090 16535465 -28372105 - THE1C LTR MaLR 0 375 1 9571 110 70 33 chr21 16535470 16536988 -28370582 - THE1C-int LTR MaLR -6 1574 1 2377 131 11 8 chr21 16536988 16537362 -28370208 - THE1C LTR MaLR 0 375 1 1950 153 9 15 chr21 16537362 16537980 -28369590 - L1MA4 LINE L1 -713 6289 5673 7595 245 133 22 chr21 16537980 16540719 -28366851 - L1MA4 LINE L1 -3787 3061 2 186 71 0 0 chr21 16541181 16541209 -28366361 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 262 183 77 0 chr21 16541621 16541692 -28365878 + MLT1I LTR MaLR 326 450 0 565 259 42 48 chr21 16542129 16542318 -28365252 + MIR SINE MIR 33 220 -42 323 214 29 86 chr21 16542761 16542901 -28364669 + L1ME3A LINE L1 6016 6147 -23 1901 151 7 0 chr21 16544174 16544465 -28363105 - AluSx SINE Alu -19 293 1 27 29 0 0 chr21 16544530 16544564 -28363006 + AT_rich Low_complexity Low_complexity 1 34 0 2021 157 46 6 chr21 16544801 16545152 -28362418 - MLT1A1 LTR MaLR 0 365 1 182 348 37 55 chr21 16545458 16545622 -28361948 + MIR SINE MIR 53 213 -49 298 306 45 101 chr21 16547148 16547544 -28360026 - MLT1I LTR MaLR -32 377 4 22 23 0 45 chr21 16550132 16550156 -28357414 + AT_rich Low_complexity Low_complexity 1 24 -18 1640 178 54 9 chr21 16550156 16550505 -28357065 - MLT1A1 LTR MaLR 0 365 1 22 23 0 45 chr21 16550505 16550524 -28357046 + AT_rich Low_complexity Low_complexity 24 42 0 1226 147 3 68 chr21 16550765 16550809 -28356761 - L1MA7 LINE L1 -18 6273 6228 339 25 0 0 chr21 16550809 16550849 -28356721 + (TA)n Simple_repeat Simple_repeat 2 41 0 1226 147 3 68 chr21 16550849 16551126 -28356444 - L1MA7 LINE L1 -63 6228 5867 952 215 56 24 chr21 16551150 16551401 -28356169 + MIR SINE MIR 4 262 0 21 0 0 0 chr21 16553239 16553260 -28354310 + AT_rich Low_complexity Low_complexity 1 21 0 2210 141 13 19 chr21 16553892 16554269 -28353301 - THE1C LTR MaLR 0 375 1 220 217 67 17 chr21 16554746 16554806 -28352764 - L2 LINE L2 -10 3303 3241 2286 114 11 8 chr21 16556100 16556452 -28351118 - THE1A LTR MaLR -2 353 1 204 281 0 31 chr21 16557782 16557846 -28349724 + GA-rich Low_complexity Low_complexity 4 65 0 591 172 164 0 chr21 16561414 16561536 -28346034 - FRAM SINE Alu -16 160 19 194 317 17 0 chr21 16561555 16561615 -28345955 + MIR3 SINE MIR 141 201 -7 301 284 151 48 chr21 16562876 16563147 -28344423 - L1M2 LINE L1 -5643 1206 908 228 64 64 0 chr21 16566451 16566498 -28341072 + (TA)n Simple_repeat Simple_repeat 1 50 0 322 233 22 22 chr21 16566502 16566592 -28340978 - L1MC4 LINE L1 -1339 6703 6614 353 255 57 9 chr21 16566597 16566703 -28340867 + L1MC4 LINE L1 6612 6722 -1320 688 97 74 3 chr21 16566703 16567018 -28340552 + (TA)n Simple_repeat Simple_repeat 1 337 0 443 272 183 0 chr21 16567540 16567709 -28339861 + MIR SINE MIR 1 200 -62 241 371 177 0 chr21 16567708 16567832 -28339738 + MER91A DNA MER1_type 15 160 -36 * 219 304 89 37 chr21 16568004 16568139 -28339431 - MIR SINE MIR -118 144 3 43 35 0 0 chr21 16568292 16568349 -28339221 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr21 16568412 16568462 -28339108 + AT_rich Low_complexity Low_complexity 1 50 0 26 88 0 0 chr21 16568779 16568847 -28338723 + AT_rich Low_complexity Low_complexity 1 68 0 262 111 0 69 chr21 16569244 16569349 -28338221 + (TTTA)n Simple_repeat Simple_repeat 1 97 0 29 0 0 0 chr21 16569357 16569386 -28338184 + AT_rich Low_complexity Low_complexity 1 29 0 213 77 6 128 chr21 16569386 16569542 -28338028 + (TTTA)n Simple_repeat Simple_repeat 2 138 0 70 11 0 11 chr21 16569542 16569592 -28337978 + AT_rich Low_complexity Low_complexity 1 51 -36 181 0 0 65 chr21 16569592 16569623 -28337947 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 70 11 0 11 chr21 16569623 16569660 -28337910 + AT_rich Low_complexity Low_complexity 51 87 0 630 93 0 10 chr21 16569718 16569815 -28337755 + L1PA12 LINE L1 6071 6166 -2 21 57 0 0 chr21 16569835 16569870 -28337700 + AT_rich Low_complexity Low_complexity 1 35 0 181 130 65 0 chr21 16572555 16572601 -28334969 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 33 56 0 0 chr21 16575257 16575311 -28332259 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr21 16576339 16576360 -28331210 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 16576516 16576549 -28331021 + AT_rich Low_complexity Low_complexity 1 33 0 201 189 0 19 chr21 16576609 16576662 -28330908 + T-rich Low_complexity Low_complexity 4 55 0 22 35 0 0 chr21 16576763 16576792 -28330778 + AT_rich Low_complexity Low_complexity 1 29 0 1001 115 30 12 chr21 16577246 16577411 -28330159 + L1PA11 LINE L1 6007 6174 0 21 0 0 0 chr21 16577483 16577504 -28330066 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr21 16577975 16578015 -28329555 + AT_rich Low_complexity Low_complexity 1 40 0 1770 160 7 3 chr21 16578397 16578684 -28328886 + AluJb SINE Alu 1 288 -24 329 58 19 0 chr21 16578687 16578739 -28328831 + (CAA)n Simple_repeat Simple_repeat 2 54 0 522 29 0 0 chr21 16579170 16579240 -28328330 + L1PA2 LINE L1 6086 6155 0 2083 114 3 10 chr21 16579250 16579547 -28328023 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr21 16579864 16579908 -28327662 + AT_rich Low_complexity Low_complexity 1 44 0 1789 141 21 93 chr21 16580122 16580497 -28327073 - MER7A DNA MER2_type 0 346 1 236 366 24 0 chr21 16580915 16581038 -28326532 - MIR SINE MIR -61 201 76 1878 103 0 0 chr21 16582239 16582491 -28325079 + AluSx SINE Alu 54 305 -7 455 67 0 0 chr21 16582985 16583045 -28324525 + L1P5 LINE L1 5731 5790 -361 316 244 0 0 chr21 16583047 16583137 -28324433 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr21 16583155 16583178 -28324392 + (CA)n Simple_repeat Simple_repeat 2 24 0 2451 124 0 3 chr21 16583178 16583548 -28324022 + L1PB1 LINE L1 5782 6150 -1 1918 135 68 42 chr21 16586133 16586488 -28321082 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr21 16587660 16587683 -28319887 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr21 16588045 16588109 -28319461 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr21 16588588 16588617 -28318953 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr21 16589452 16589476 -28318094 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 5372 78 25 6 chr21 16589481 16590213 -28317357 - L1PA8A LINE L1 -13 6118 5373 2202 95 0 3 chr21 16590310 16590638 -28316932 + AluSq SINE Alu 3 329 0 864 194 51 6 chr21 16590794 16590969 -28316601 - MER5A DNA MER1_type -6 183 1 381 284 39 0 chr21 16592126 16592228 -28315342 - MIR SINE MIR -156 106 1 413 254 80 14 chr21 16594119 16594257 -28313313 + MER63 DNA MER1_type 1 773 -289 2351 77 0 22 chr21 16594619 16594932 -28312638 - AluSx SINE Alu -6 306 1 2200 96 0 10 chr21 16596304 16596606 -28310964 + AluY SINE Alu 1 299 -12 207 0 0 0 chr21 16596791 16596814 -28310756 + (T)n Simple_repeat Simple_repeat 1 23 0 2556 50 0 28 chr21 16597180 16597500 -28310070 - AluY SINE Alu 0 311 1 29 0 0 0 chr21 16597549 16597578 -28309992 + AT_rich Low_complexity Low_complexity 1 29 0 2173 97 16 23 chr21 16598161 16598470 -28309100 + AluSc SINE Alu 1 307 -2 373 255 0 19 chr21 16599336 16599442 -28308128 - MER5B DNA MER1_type -2 176 73 2581 48 0 3 chr21 16599682 16599992 -28307578 + AluY SINE Alu 1 309 -2 21 0 0 0 chr21 16601323 16601344 -28306226 + AT_rich Low_complexity Low_complexity 1 21 0 307 359 94 8 chr21 16602199 16602316 -28305254 - MER5A DNA MER1_type 0 189 63 2008 106 4 0 chr21 16602620 16602893 -28304677 + AluSq SINE Alu 36 309 -4 184 277 0 0 chr21 16603135 16603182 -28304388 + MIR SINE MIR 93 139 -69 365 312 41 32 chr21 16603373 16603591 -28303979 + L1MC4 LINE L1 6762 6981 -1061 21 0 0 0 chr21 16603802 16603823 -28303747 + AT_rich Low_complexity Low_complexity 1 21 0 1151 323 166 27 chr21 16603963 16605118 -28302452 + L2 LINE L2 1990 3313 0 2993 179 14 0 chr21 16605793 16606350 -28301220 + L1PB4 LINE L1 5586 6150 -6 2153 88 26 26 chr21 16606395 16606702 -28300868 - AluSx SINE Alu -5 307 1 21 57 0 0 chr21 16606832 16606867 -28300703 + AT_rich Low_complexity Low_complexity 1 35 0 2335 88 3 0 chr21 16607097 16607393 -28300177 + AluSp SINE Alu 1 297 -16 542 244 18 37 chr21 16607674 16607838 -28299732 + L1ME2 LINE L1 5980 6140 -24 1059 284 65 44 chr21 16607846 16608368 -28299202 + L1MC4a LINE L1 6344 6876 -932 375 282 78 7 chr21 16608379 16608521 -28299049 + L1MC4 LINE L1 7517 7668 -374 627 263 59 16 chr21 16608596 16608851 -28298719 + L1MC4 LINE L1 7777 8042 0 316 325 33 33 chr21 16609018 16609169 -28298401 - MIR SINE MIR -98 164 14 3002 168 43 6 chr21 16609768 16610305 -28297265 + MER41D LTR ERV1 1 557 0 596 289 87 14 chr21 16612659 16612894 -28294676 + MIR SINE MIR 14 262 0 2505 56 0 3 chr21 16613737 16614042 -28293528 + AluY SINE Alu 1 304 -7 196 109 22 22 chr21 16614191 16614237 -28293333 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 24 77 0 0 chr21 16614463 16614515 -28293055 + AT_rich Low_complexity Low_complexity 1 52 0 523 263 0 72 chr21 16617596 16617790 -28289780 + MER5A DNA MER1_type 7 186 -3 728 116 20 20 chr21 16618053 16618199 -28289371 + CT-rich Low_complexity Low_complexity 3 148 0 1993 130 30 10 chr21 16618210 16618511 -28289059 - AluSx SINE Alu -5 307 1 24 32 0 0 chr21 16618572 16618603 -28288967 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr21 16620775 16620799 -28286771 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 321 333 18 0 chr21 16621167 16621281 -28286289 + GA-rich Low_complexity Low_complexity 1 116 0 1033 244 98 34 chr21 16622325 16622734 -28284836 + Charlie4a DNA MER1_type 4 438 -70 592 203 14 132 chr21 16622921 16623050 -28284520 - MER5A DNA MER1_type -2 187 91 2682 23 0 0 chr21 16623050 16623354 -28284216 - AluY SINE Alu -7 304 1 592 203 14 132 chr21 16623354 16623436 -28284134 - MER5A DNA MER1_type -98 91 1 27 29 0 0 chr21 16623907 16623941 -28283629 + AT_rich Low_complexity Low_complexity 1 34 0 261 0 0 0 chr21 16626243 16626272 -28281298 + (CA)n Simple_repeat Simple_repeat 2 30 0 4723 45 12 2 chr21 16626465 16627049 -28280521 - L1PA7 LINE L1 -1 6153 5564 3436 60 0 52 chr21 16627050 16627719 -28279851 + L1PA7 LINE L1 4918 5565 -589 6871 161 12 24 chr21 16627903 16628801 -28278769 + L1M1 LINE L1 3964 4850 -1450 180 0 0 0 chr21 16628801 16628821 -28278749 + (T)n Simple_repeat Simple_repeat 1 20 0 6871 161 12 24 chr21 16628821 16629707 -28277863 + L1M1 LINE L1 4850 5745 -555 219 391 29 0 chr21 16629862 16629931 -28277639 - L2 LINE L2 -68 3204 3134 21 57 0 0 chr21 16630322 16630357 -28277213 + AT_rich Low_complexity Low_complexity 1 35 0 1327 176 57 7 chr21 16630924 16631203 -28276367 + L1MA7 LINE L1 5926 6218 -73 226 141 16 16 chr21 16631292 16631356 -28276214 + L1MA7 LINE L1 6216 6279 -12 376 274 112 42 chr21 16632013 16632148 -28275422 + MIR SINE MIR 17 174 -88 2259 95 3 0 chr21 16632148 16632444 -28275126 - AluSq SINE Alu -16 297 1 376 274 112 42 chr21 16632444 16632523 -28275047 + MIR SINE MIR 174 246 -16 807 38 19 0 chr21 16633257 16633362 -28274208 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 16633362 16633384 -28274186 + AT_rich Low_complexity Low_complexity 1 22 0 873 47 0 0 chr21 16633431 16633538 -28274032 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 16633538 16633560 -28274010 + AT_rich Low_complexity Low_complexity 1 22 0 898 37 0 0 chr21 16633607 16633714 -28273856 + L1PA5 LINE L1 6039 6145 -9 853 65 0 0 chr21 16633785 16633892 -28273678 + L1PA5 LINE L1 6039 6145 -9 26 0 0 0 chr21 16633892 16633918 -28273652 + AT_rich Low_complexity Low_complexity 1 26 0 192 40 0 0 chr21 16635559 16635584 -28271986 + (TG)n Simple_repeat Simple_repeat 2 26 0 1362 57 0 0 chr21 16635622 16635798 -28271772 + (CATCC)n Simple_repeat Simple_repeat 3 178 0 30 0 0 0 chr21 16636273 16636303 -28271267 + AT_rich Low_complexity Low_complexity 1 30 0 286 313 78 36 chr21 16637005 16637171 -28270399 + MIR SINE MIR 11 183 -79 2396 65 3 3 chr21 16637289 16637595 -28269975 - AluSp SINE Alu -7 306 1 27 29 0 0 chr21 16638101 16638135 -28269435 + AT_rich Low_complexity Low_complexity 1 34 0 2358 68 7 0 chr21 16639207 16639516 -28268054 - AluY SINE Alu 0 311 1 4332 161 11 21 chr21 16640067 16640889 -28266681 + L1MA4 LINE L1 5480 6293 -7 2269 130 28 8 chr21 16641091 16641444 -28266126 - THE1B LTR MaLR -4 360 1 28 0 0 0 chr21 16642463 16642491 -28265079 + AT_rich Low_complexity Low_complexity 1 28 0 252 212 0 0 chr21 16643660 16643726 -28263844 + (TA)n Simple_repeat Simple_repeat 2 67 0 1467 103 0 5 chr21 16645718 16645921 -28261649 + AluSg/x SINE Alu 83 284 -28 25 51 0 0 chr21 16646105 16646144 -28261426 + AT_rich Low_complexity Low_complexity 1 39 0 2183 124 22 3 chr21 16646437 16646793 -28260777 + L1MA3 LINE L1 5943 6305 0 24 0 0 0 chr21 16647580 16647604 -28259966 + AT_rich Low_complexity Low_complexity 1 24 0 350 348 139 30 chr21 16647699 16648325 -28259245 + L2 LINE L2 2136 2829 -485 21 0 0 0 chr21 16648553 16648574 -28258996 + AT_rich Low_complexity Low_complexity 1 21 0 2466 47 0 3 chr21 16648657 16648958 -28258612 + AluY SINE Alu 1 300 -11 339 330 17 0 chr21 16649682 16649797 -28257773 + MIR SINE MIR 146 262 0 1003 84 51 6 chr21 16650225 16650409 -28257161 - L1P LINE L1 -743 5403 5226 4795 111 8 1 chr21 16650409 16651126 -28256444 + L1PA13 LINE L1 5440 6162 -1 300 238 10 40 chr21 16651145 16651246 -28256324 + MER103 DNA DNA 67 164 -2 23 33 0 0 chr21 16651405 16651435 -28256135 + AT_rich Low_complexity Low_complexity 1 30 0 238 352 23 47 chr21 16652465 16652593 -28254977 - MIR SINE MIR -79 183 59 21 0 0 0 chr21 16654404 16654425 -28253145 + AT_rich Low_complexity Low_complexity 1 21 0 796 228 12 0 chr21 16654530 16654701 -28252869 - FAM SINE Alu -2 173 1 729 154 0 0 chr21 16654943 16655060 -28252510 - AluSq/x SINE Alu -196 117 1 348 103 0 0 chr21 16656561 16656619 -28250951 + (GA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr21 16656945 16656968 -28250602 + AT_rich Low_complexity Low_complexity 1 23 0 2207 162 39 34 chr21 16657911 16658455 -28249115 + MLT2A2 LTR ERVL 1 553 -1 22 0 0 0 chr21 16658530 16658552 -28249018 + AT_rich Low_complexity Low_complexity 1 22 0 1612 194 0 29 chr21 16658921 16659236 -28248334 - AluJo SINE Alu -5 307 2 235 323 0 0 chr21 16660099 16660161 -28247409 - L2 LINE L2 -15 3257 3196 192 152 0 0 chr21 16660177 16660210 -28247360 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 232 305 63 11 chr21 16660238 16660333 -28247237 - MIR SINE MIR -100 162 63 186 189 0 0 chr21 16660575 16660612 -28246958 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr21 16663077 16663098 -28244472 + AT_rich Low_complexity Low_complexity 1 21 0 2522 50 0 0 chr21 16663326 16663629 -28243941 + AluY SINE Alu 1 303 -8 395 340 124 21 chr21 16664096 16664378 -28243192 - L3 LINE CR1 -47 1530 1220 1742 157 28 3 chr21 16665110 16665396 -28242174 - AluSx SINE Alu -19 293 1 381 235 0 3 chr21 16665693 16665783 -28241787 + AluJ/FLAM SINE Alu 1 68 -234 414 60 0 60 chr21 16665788 16665855 -28241715 + HERVK14 LTR ERVK 5880 5942 -3 1168 169 15 10 chr21 16665860 16666061 -28241509 + AluJo SINE Alu 93 294 -18 619 281 78 66 chr21 16666703 16666959 -28240611 - MIR SINE MIR -1 261 3 596 305 64 58 chr21 16668239 16668774 -28238796 + L2 LINE L2 2510 3312 -1 1821 169 30 21 chr21 16669231 16669603 -28237967 + THE1C LTR MaLR 1 375 0 183 222 95 32 chr21 16669799 16669862 -28237708 + L2 LINE L2 3200 3266 -6 594 290 5 21 chr21 16670235 16670452 -28237118 + L1M4 LINE L1 4186 4396 -1750 305 290 0 0 chr21 16671756 16671849 -28235721 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 525 251 42 54 chr21 16672407 16672646 -28234924 + MER106A DNA MER1_type 1 236 0 233 286 307 21 chr21 16673444 16673636 -28233934 + MIR SINE MIR 3 249 -13 21 36 0 0 chr21 16674219 16674247 -28233323 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr21 16675789 16675839 -28231731 + AT_rich Low_complexity Low_complexity 1 50 0 288 341 38 0 chr21 16676105 16676237 -28231333 + MIR SINE MIR 103 239 -23 210 362 184 5 chr21 16676501 16676697 -28230873 + MIR SINE MIR 32 262 0 23 33 0 0 chr21 16676798 16676828 -28230742 + AT_rich Low_complexity Low_complexity 1 30 0 2809 184 77 2 chr21 16677809 16678384 -28229186 - L1MB1 LINE L1 -1 6167 5550 1599 205 40 5 chr21 16678385 16678780 -28228790 - L1MB1 LINE L1 -1220 4926 4518 237 344 25 33 chr21 16679767 16679889 -28227681 - MER5A DNA MER1_type -50 139 19 25 31 0 0 chr21 16680502 16680534 -28227036 + AT_rich Low_complexity Low_complexity 1 32 0 320 293 122 24 chr21 16680569 16680733 -28226837 - MIR SINE MIR -4 258 79 187 246 15 92 chr21 16680787 16680852 -28226718 - MIR SINE MIR -202 60 1 21 57 0 0 chr21 16681348 16681383 -28226187 + AT_rich Low_complexity Low_complexity 1 35 0 285 280 50 0 chr21 16682246 16682346 -28225224 - MER103 DNA DNA -51 115 11 784 171 22 15 chr21 16683316 16683573 -28223997 + CT-rich Low_complexity Low_complexity 1 258 0 2098 100 30 0 chr21 16683597 16683896 -28223674 - AluSq SINE Alu 0 313 6 26 50 0 0 chr21 16684793 16684833 -28222737 + AT_rich Low_complexity Low_complexity 1 40 0 504 273 201 10 chr21 16685550 16685744 -28221826 - MIR SINE MIR -1 261 31 464 299 32 6 chr21 16686158 16686315 -28221255 + MLT1J2 LTR MaLR 6 166 -284 1036 193 173 24 chr21 16688929 16689224 -28218346 - MER44D DNA MER2_type 0 609 1 49 66 0 0 chr21 16689824 16689915 -28217655 + AT_rich Low_complexity Low_complexity 1 91 0 369 0 0 0 chr21 16689965 16690006 -28217564 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 16691306 16691341 -28216229 + AT_rich Low_complexity Low_complexity 1 35 0 206 403 40 0 chr21 16691718 16691842 -28215728 - L2 LINE L2 0 3313 3185 2872 3 0 0 chr21 16692058 16692371 -28215199 + AluYb8 SINE Alu 1 313 -5 227 301 18 62 chr21 16693900 16694013 -28213557 - MIR SINE MIR -153 109 2 22 0 0 0 chr21 16694067 16694089 -28213481 + AT_rich Low_complexity Low_complexity 1 22 0 189 204 23 0 chr21 16696672 16696716 -28210854 + L2 LINE L2 3269 3313 0 26 0 0 0 chr21 16697118 16697144 -28210426 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr21 16697188 16697217 -28210353 + AT_rich Low_complexity Low_complexity 1 29 0 377 307 124 27 chr21 16697541 16697766 -28209804 + MIR SINE MIR 3 249 -13 351 0 0 0 chr21 16698034 16698073 -28209497 + (CA)n Simple_repeat Simple_repeat 1 39 0 1095 110 64 0 chr21 16699680 16699853 -28207717 + L1PA13 LINE L1 5980 6163 0 307 350 77 16 chr21 16699947 16700141 -28207429 + MIR SINE MIR 7 212 -50 389 225 13 37 chr21 16700456 16700632 -28206938 + MER46C DNA MER2_type 79 2731 0 34 42 0 0 chr21 16700811 16700859 -28206711 + AT_rich Low_complexity Low_complexity 1 48 0 33 66 0 0 chr21 16702945 16703006 -28204564 + AT_rich Low_complexity Low_complexity 1 61 0 484 316 93 45 chr21 16703267 16703618 -28203952 + MLT1L LTR MaLR 170 544 -71 2167 96 0 3 chr21 16703618 16703909 -28203661 - AluSc SINE Alu -19 290 1 484 316 93 45 chr21 16703909 16703953 -28203617 + MLT1L LTR MaLR 544 584 -31 424 300 15 15 chr21 16704059 16704189 -28203381 - MIR SINE MIR -114 148 19 201 175 0 0 chr21 16704432 16704472 -28203098 + CT-rich Low_complexity Low_complexity 3 42 0 534 31 0 0 chr21 16705463 16705527 -28202043 + (CA)n Simple_repeat Simple_repeat 2 65 0 204 171 0 49 chr21 16705527 16705568 -28202002 - MIR SINE MIR -167 95 57 28 29 0 0 chr21 16705779 16705814 -28201756 + AT_rich Low_complexity Low_complexity 1 35 0 318 259 146 45 chr21 16706867 16707087 -28200483 + HAL1 LINE L1 1060 1301 -1206 264 200 0 0 chr21 16707087 16707152 -28200418 + GA-rich Low_complexity Low_complexity 1 65 0 304 323 135 18 chr21 16708313 16708595 -28198975 - L2 LINE L2 -1 3312 2998 1929 156 46 22 chr21 16708646 16709012 -28198558 - THE1C LTR MaLR 0 375 1 9214 131 50 12 chr21 16709012 16710531 -28197039 - THE1C-int LTR MaLR 0 1580 4 1972 132 62 14 chr21 16710531 16710883 -28196687 - THE1C LTR MaLR -3 372 1 216 360 33 20 chr21 16711065 16711215 -28196355 + L3 LINE CR1 1248 1399 -178 417 54 0 0 chr21 16712382 16712438 -28195132 + (TC)n Simple_repeat Simple_repeat 1 56 0 346 294 74 23 chr21 16714178 16714354 -28193216 + MIR SINE MIR 22 201 -61 2427 74 0 0 chr21 16714359 16714658 -28192912 + AluY SINE Alu 1 299 -12 456 67 0 0 chr21 16714658 16714718 -28192852 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 201 283 50 0 chr21 16715311 16715371 -28192199 - L2 LINE L2 -20 3293 3231 285 399 18 6 chr21 16717006 16717174 -28190396 - MIR SINE MIR -72 190 21 1178 238 44 0 chr21 16717362 16717660 -28189910 + L1MD3 LINE L1 7674 7984 -11 5926 179 5 3 chr21 16717690 16719619 -28187951 + L1PA16 LINE L1 4234 6166 0 2263 85 3 0 chr21 16720125 16720419 -28187151 + AluSc SINE Alu 10 304 -5 524 307 95 13 chr21 16720553 16720784 -28186786 + MIR SINE MIR 13 262 0 348 324 61 37 chr21 16723343 16723834 -28183736 + L1MC/D LINE L1 4713 5215 -931 664 305 40 34 chr21 16723900 16724225 -28183345 - LTR16C LTR ERVL -32 459 133 232 321 96 55 chr21 16724543 16724814 -28182756 + L1MC/D LINE L1 5525 5806 -2002 1069 198 8 57 chr21 16725303 16725550 -28182020 - AluJb SINE Alu 0 312 78 690 277 74 68 chr21 16726875 16727402 -28180168 - HAL1b LINE L1 -747 601 72 677 174 0 7 chr21 16727676 16727814 -28179756 + CT-rich Low_complexity Low_complexity 1 137 0 216 0 0 0 chr21 16730590 16730614 -28176956 + (CTG)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr21 16730808 16730841 -28176729 + AT_rich Low_complexity Low_complexity 1 33 0 798 130 18 27 chr21 16731052 16731275 -28176295 + CT-rich Low_complexity Low_complexity 1 221 0 2023 98 0 44 chr21 16731294 16731590 -28175980 - AluSg1 SINE Alu -22 287 5 1207 161 0 0 chr21 16731597 16731789 -28175781 - AluJo SINE Alu -15 297 106 24 0 0 0 chr21 16731798 16731822 -28175748 + AT_rich Low_complexity Low_complexity 1 24 0 5027 193 26 22 chr21 16732046 16733623 -28173947 - L1MA10 LINE L1 -3 6331 4748 2796 190 28 14 chr21 16733626 16734263 -28173307 + L1MA10 LINE L1 4102 4747 -1399 279 239 0 0 chr21 16735695 16735783 -28171787 + (CA)n Simple_repeat Simple_repeat 2 89 0 24 0 0 0 chr21 16736586 16736610 -28170960 + AT_rich Low_complexity Low_complexity 1 24 0 2028 182 56 25 chr21 16736795 16737080 -28170490 + MER65C LTR ERV1 3 308 -153 2444 77 0 0 chr21 16737080 16737391 -28170179 - AluY SINE Alu 0 311 1 2028 182 56 25 chr21 16737391 16737550 -28170020 + MER65C LTR ERV1 308 461 0 673 325 13 21 chr21 16737692 16737926 -28169644 + MLT1I LTR MaLR 176 407 -2 191 383 92 0 chr21 16738020 16738140 -28169430 + MIR3 SINE MIR 78 208 0 186 312 321 0 chr21 16738786 16738895 -28168675 + MER5A DNA MER1_type 40 183 -6 273 323 71 39 chr21 16739165 16739320 -28168250 + MIR SINE MIR 2 161 -101 1959 139 0 7 chr21 16739851 16740152 -28167418 - AluSx SINE Alu -13 299 1 603 292 21 79 chr21 16740363 16740603 -28166967 - MIR SINE MIR -1 261 36 469 323 104 70 chr21 16740619 16741148 -28166422 + MLT2F LTR ERVL 6 552 -111 2457 32 3 29 chr21 16741273 16741582 -28165988 - AluY SINE Alu -10 301 1 428 242 27 7 chr21 16742746 16742895 -28164675 + (TA)n Simple_repeat Simple_repeat 2 153 0 182 182 0 45 chr21 16743789 16743833 -28163737 - L2 LINE L2 -15 3257 3216 567 294 33 28 chr21 16744053 16744233 -28163337 - MIR SINE MIR -52 210 30 8085 99 31 5 chr21 16746111 16747267 -28160303 + THE1A-int LTR MaLR 395 1580 0 2176 135 17 9 chr21 16747267 16747615 -28159955 + THE1A LTR MaLR 1 351 -4 23 54 0 0 chr21 16749416 16749453 -28158117 + AT_rich Low_complexity Low_complexity 1 37 0 1610 209 53 31 chr21 16750233 16750687 -28156883 + MLT1C LTR MaLR 1 464 -3 1532 164 110 7 chr21 16751277 16751558 -28156012 + AluJb SINE Alu 1 310 -2 294 301 20 7 chr21 16752100 16752253 -28155317 + (TA)n Simple_repeat Simple_repeat 2 156 0 11403 34 3 1 chr21 16752970 16754357 -28153213 - L1PA3 LINE L1 -1967 4179 2787 10004 22 0 0 chr21 16754357 16756354 -28151216 + L1PA3 LINE L1 4191 6153 -2 11403 34 3 1 chr21 16756354 16756379 -28151191 - L1P LINE L1 -3359 2787 2764 21 36 0 0 chr21 16757087 16757115 -28150455 + AT_rich Low_complexity Low_complexity 1 28 0 188 335 0 0 chr21 16757153 16757235 -28150335 - MIR SINE MIR -64 144 63 2595 30 3 0 chr21 16757959 16758261 -28149309 + AluY SINE Alu 1 303 -8 2046 100 44 0 chr21 16758878 16759189 -28148381 + AluSq SINE Alu 2 324 0 2275 103 0 7 chr21 16759193 16759503 -28148067 + AluSg SINE Alu 3 310 0 1976 130 0 0 chr21 16759528 16759857 -28147713 - AluSx SINE Alu 0 329 1 22 35 0 0 chr21 16760052 16760081 -28147489 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 16760346 16760372 -28147198 + AT_rich Low_complexity Low_complexity 1 26 0 320 333 47 30 chr21 16761060 16761399 -28146171 + L1PA12 LINE L1 11 355 -7226 3174 104 0 2 chr21 16762061 16762513 -28145057 + L1PA7 LINE L1 5704 6154 0 2247 163 25 41 chr21 16762513 16762814 -28144756 - L1MA6 LINE L1 -89 6211 5907 359 110 11 132 chr21 16762814 16762905 -28144665 + MADE1 DNA Mariner 1 80 0 2247 163 25 41 chr21 16762905 16763073 -28144497 - L1MA6 LINE L1 -393 5907 5787 1731 150 88 0 chr21 16763073 16763347 -28144223 - AluSx SINE Alu -14 298 1 2247 163 25 41 chr21 16763347 16763432 -28144138 - L1MA6 LINE L1 -513 5787 5702 * 7755 171 24 24 chr21 16763428 16765031 -28142539 + L1M2 LINE L1 3740 5340 -960 2088 125 14 0 chr21 16765031 16765326 -28142244 + AluSg SINE Alu 1 299 -11 7755 171 24 24 chr21 16765326 16765375 -28142195 + L1M2 LINE L1 5340 5387 -913 1840 164 40 30 chr21 16765375 16765746 -28141824 + THE1C LTR MaLR 1 375 0 7755 171 24 24 chr21 16765746 16766044 -28141526 + L1M2 LINE L1 5387 5708 -592 417 382 24 20 chr21 16766180 16766434 -28141136 + MIR SINE MIR 5 259 -3 387 321 98 11 chr21 16767353 16767537 -28140033 + MIR SINE MIR 47 246 -16 357 24 0 0 chr21 16767726 16767768 -28139802 + (CA)n Simple_repeat Simple_repeat 2 43 0 239 191 12 60 chr21 16769740 16769824 -28137746 + (CATG)n Simple_repeat Simple_repeat 4 83 0 1364 170 4 30 chr21 16770249 16770514 -28137056 + AluJb SINE Alu 1 258 -54 1573 175 12 6 chr21 16770634 16770954 -28136616 - L1MA10 LINE L1 -1 6333 6012 274 327 57 19 chr21 16771051 16771210 -28136360 - L3 LINE CR1 -200 1377 1213 509 168 127 184 chr21 16771211 16771455 -28136115 - MLT2C2 LTR ERVL 0 464 235 2280 170 20 0 chr21 16771455 16771860 -28135710 + L1MB1 LINE L1 5580 5992 -197 2429 148 44 104 chr21 16772240 16772788 -28134782 - MLT2B2 LTR ERVL 0 515 1 2535 102 39 6 chr21 16772793 16773156 -28134414 + THE1C LTR MaLR 1 375 0 508 283 78 29 chr21 16774851 16775095 -28132475 + MIR SINE MIR 6 261 -1 1528 270 106 41 chr21 16776768 16777136 -28130434 - L1M4 LINE L1 -985 5161 4818 2113 112 0 0 chr21 16777136 16777421 -28130149 - AluSx SINE Alu -7 305 21 1528 270 106 41 chr21 16777421 16778266 -28129304 - L1M4 LINE L1 -1328 4818 3869 1638 192 62 30 chr21 16778353 16778754 -28128816 - MLT2D LTR ERVL 0 414 1 239 176 15 59 chr21 16778787 16778838 -28128732 + L1MA9 LINE L1 6244 6293 -19 2793 164 33 4 chr21 16778838 16779321 -28128249 + LOR1a LTR ERV1 1 497 0 239 176 15 59 chr21 16779321 16779337 -28128233 + L1MA9 LINE L1 6293 6308 -4 22 0 0 0 chr21 16780156 16780178 -28127392 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr21 16780418 16780438 -28127132 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1960 67 4 11 chr21 16780622 16780889 -28126681 + L1PA7 LINE L1 1687 1951 -4195 22421 84 5 10 chr21 16780931 16781760 -28125810 + L1PA7 LINE L1 2132 2964 -3197 2373 79 3 0 chr21 16781760 16782065 -28125505 + AluY SINE Alu 1 306 -5 22421 84 5 10 chr21 16782065 16785293 -28122277 + L1PA7 LINE L1 2964 6161 0 226 183 17 33 chr21 16785813 16785873 -28121697 + GA-rich Low_complexity Low_complexity 2 60 0 21 0 0 0 chr21 16787317 16787338 -28120232 + AT_rich Low_complexity Low_complexity 1 21 0 273 196 0 0 chr21 16790323 16790379 -28117191 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 272 16 8 chr21 16791967 16792092 -28115478 + (TA)n Simple_repeat Simple_repeat 1 126 0 2174 119 3 0 chr21 16792163 16792457 -28115113 - AluSq SINE Alu -18 295 1 1642 148 0 8 chr21 16793208 16793465 -28114105 + AluJb SINE Alu 34 288 -24 529 267 48 36 chr21 16794969 16795134 -28112436 + MER5A DNA MER1_type 23 189 0 214 351 22 37 chr21 16795163 16795297 -28112273 + L3 LINE CR1 570 701 -876 277 153 0 102 chr21 16795355 16795414 -28112156 - MLT1K LTR MaLR -16 572 520 1167 271 140 27 chr21 16796250 16796771 -28110799 - L1MC4a LINE L1 0 7808 7229 995 179 87 5 chr21 16796799 16797017 -28110553 - MER46A DNA MER2_type 0 236 1 218 180 0 40 chr21 16797116 16797166 -28110404 + (CATA)n Simple_repeat Simple_repeat 2 49 0 5146 54 3 1 chr21 16797401 16798054 -28109516 + L1PA7 LINE L1 5287 5940 -214 233 314 23 12 chr21 16798080 16798166 -28109404 - MER81 DNA DNA 0 114 28 195 409 15 8 chr21 16798176 16798308 -28109262 - L3 LINE CR1 -416 1161 1029 267 376 20 0 chr21 16798947 16799048 -28108522 + MIR SINE MIR 40 142 -66 24 0 0 0 chr21 16800036 16800060 -28107510 + AT_rich Low_complexity Low_complexity 1 24 0 1177 148 19 0 chr21 16800230 16800446 -28107124 + L1MA4A LINE L1 6077 6296 -7 26 0 0 0 chr21 16800458 16800484 -28107086 + AT_rich Low_complexity Low_complexity 1 26 0 212 175 63 0 chr21 16800681 16800744 -28106826 + (CTTAT)n Simple_repeat Simple_repeat 3 69 0 981 247 49 47 chr21 16801600 16802009 -28105561 - L1ME3A LINE L1 -1 6169 5760 204 40 0 0 chr21 16802400 16802425 -28105145 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 1162 292 127 48 chr21 16802468 16803582 -28103988 - L1ME3A LINE L1 -1161 4985 3774 2342 124 22 0 chr21 16803582 16803938 -28103632 - THE1B LTR MaLR 0 364 1 1162 292 127 48 chr21 16803938 16803978 -28103592 - L1ME3A LINE L1 -2372 3774 3739 402 277 114 25 chr21 16804221 16804427 -28103143 - MIR SINE MIR -8 254 24 201 167 0 0 chr21 16804614 16804650 -28102920 + A-rich Low_complexity Low_complexity 6 41 0 185 316 74 63 chr21 16804879 16805069 -28102501 + L2 LINE L2 530 721 -2593 614 335 32 46 chr21 16805828 16806352 -28101218 - L2 LINE L2 -2 3311 2799 2263 301 129 21 chr21 16806352 16807303 -28100267 - L2 LINE L2 -1163 2151 1098 2248 135 26 0 chr21 16807303 16807650 -28099920 - THE1B LTR MaLR -8 356 1 1818 158 21 24 chr21 16807787 16808123 -28099447 - MER1B DNA MER1_type -1 336 2 513 289 147 26 chr21 16809148 16809421 -28098149 - L2 LINE L2 0 3313 3008 23 78 0 0 chr21 16809703 16809754 -28097816 + AT_rich Low_complexity Low_complexity 1 51 0 886 279 56 31 chr21 16809800 16810155 -28097415 - HsTC2 DNA Tc2 -1530 368 5 335 238 107 0 chr21 16810215 16810337 -28097233 + MER103 DNA DNA 7 141 -25 27 29 0 0 chr21 16811002 16811036 -28096534 + AT_rich Low_complexity Low_complexity 1 34 0 1066 35 0 21 chr21 16811823 16811965 -28095605 + L1PA5 LINE L1 6016 6154 0 2424 53 13 0 chr21 16812121 16812421 -28095149 + AluY SINE Alu 1 304 -7 647 146 0 0 chr21 16812524 16812620 -28094950 + FLAM_C SINE Alu 26 121 -22 180 338 29 0 chr21 16812638 16812706 -28094864 - MIR SINE MIR -109 153 84 22 0 0 0 chr21 16813874 16813896 -28093674 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr21 16815251 16815285 -28092285 + (GA)n Simple_repeat Simple_repeat 1 34 0 738 281 121 38 chr21 16815355 16815783 -28091787 + MLT1C LTR MaLR 2 467 0 1125 200 47 59 chr21 16815958 16816397 -28091173 - MLT1B LTR MaLR -7 383 1 268 289 0 0 chr21 16816613 16816689 -28090881 - LTR33 LTR ERVL -443 78 3 30 27 0 0 chr21 16817486 16817523 -28090047 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr21 16817954 16817990 -28089580 + AT_rich Low_complexity Low_complexity 1 36 0 228 235 82 35 chr21 16818310 16818395 -28089175 - MIR SINE MIR -97 165 77 10628 90 8 1 chr21 16820274 16822561 -28085009 + L1PA7 LINE L1 3857 6143 -11 419 35 18 0 chr21 16822562 16822619 -28084951 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chr21 16823010 16823038 -28084532 + AT_rich Low_complexity Low_complexity 1 28 0 5661 163 22 23 chr21 16823237 16825216 -28082354 - L1MA6 LINE L1 -9 6291 4316 316 92 71 20 chr21 16825664 16825762 -28081808 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 329 332 191 19 chr21 16826450 16826712 -28080858 + L3 LINE CR1 744 1050 -527 308 304 25 0 chr21 16826982 16827061 -28080509 - L2 LINE L2 -8 3264 3184 1743 141 76 25 chr21 16827260 16827615 -28079955 + THE1C LTR MaLR 1 373 -2 7429 118 6 107 chr21 16827618 16829022 -28078548 + THE1C-int LTR MaLR 1 1263 -317 28 48 0 0 chr21 16829363 16829405 -28078165 + AT_rich Low_complexity Low_complexity 1 42 0 1991 130 0 3 chr21 16830432 16830765 -28076805 + AluSx SINE Alu 1 332 0 252 0 0 0 chr21 16831722 16831750 -28075820 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1406 78 12 121 chr21 16833051 16833308 -28074262 - MER30 DNA MER1_type 0 230 2 1535 207 3 19 chr21 16836699 16837008 -28070562 + AluJo SINE Alu 6 309 -3 207 0 0 0 chr21 16837034 16837057 -28070513 + (CAA)n Simple_repeat Simple_repeat 2 24 0 397 206 57 120 chr21 16838509 16838718 -28068852 + MLT1J2 LTR MaLR 24 219 -231 21 57 0 0 chr21 16841554 16841589 -28065981 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr21 16843985 16844011 -28063559 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 228 111 0 0 chr21 16844031 16844067 -28063503 + (TC)n Simple_repeat Simple_repeat 2 37 0 1962 229 101 2 chr21 16844200 16844734 -28062836 - L1MC3 LINE L1 -8 7777 7191 315 296 23 0 chr21 16844740 16844828 -28062742 - MLT1F1 LTR MaLR -443 124 35 986 190 51 1 chr21 16844828 16845076 -28062494 - L1MC3 LINE L1 -688 7097 6852 543 233 105 23 chr21 16845105 16845277 -28062293 + MER5A DNA MER1_type 4 189 0 1785 98 28 47 chr21 16845325 16845370 -28062200 - L1MA5 LINE L1 -10 6290 6246 2145 111 7 0 chr21 16845370 16845667 -28061903 - AluSx SINE Alu -13 299 1 1785 98 28 47 chr21 16845667 16845938 -28061632 - L1MA5 LINE L1 -54 6246 5980 336 102 0 0 chr21 16846411 16846460 -28061110 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr21 16846713 16846734 -28060836 + AT_rich Low_complexity Low_complexity 1 21 0 195 139 0 0 chr21 16848185 16848221 -28059349 + (CA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr21 16848252 16848296 -28059274 + AT_rich Low_complexity Low_complexity 1 44 0 2904 197 10 45 chr21 16848923 16849052 -28058518 + L1MA3 LINE L1 5569 5701 -604 2283 98 0 3 chr21 16849052 16849347 -28058223 + AluSq SINE Alu 4 297 -16 2904 197 10 45 chr21 16849347 16850005 -28057565 + L1MA3 LINE L1 5701 6305 0 438 323 49 18 chr21 16850355 16850433 -28057137 + MIR SINE MIR 3 77 -185 3418 184 50 13 chr21 16850433 16851129 -28056441 + MER72 LTR ERV1 1 722 0 438 323 49 18 chr21 16851129 16851276 -28056294 + MIR SINE MIR 77 235 -27 25 0 0 0 chr21 16852262 16852287 -28055283 + AT_rich Low_complexity Low_complexity 1 25 0 1640 196 10 16 chr21 16852358 16852669 -28054901 - AluJb SINE Alu -1 311 3 23 54 0 0 chr21 16852937 16852974 -28054596 + AT_rich Low_complexity Low_complexity 1 37 0 343 349 97 41 chr21 16853855 16854500 -28053070 + L2 LINE L2 2564 3313 0 37 0 0 0 chr21 16854855 16854892 -28052678 + AT_rich Low_complexity Low_complexity 1 37 0 563 64 0 0 chr21 16855487 16855565 -28052005 - AluJ/FRAM SINE Alu -11 301 224 315 273 45 105 chr21 16855667 16855942 -28051628 + MLT1J1 LTR MaLR 9 271 -175 842 199 0 13 chr21 16857502 16857658 -28049912 + FRAM SINE Alu 1 153 -23 576 307 73 23 chr21 16858109 16858451 -28049119 - L1ME3A LINE L1 -8 6556 6198 311 264 38 9 chr21 16858456 16858562 -28049008 - L1ME3A LINE L1 -406 6150 6042 240 318 82 35 chr21 16858729 16858899 -28048671 - L1ME3A LINE L1 -4658 2063 1886 397 316 123 57 chr21 16859056 16859506 -28048064 - L1MDa LINE L1 -4816 1724 1270 2050 148 83 42 chr21 16861169 16861603 -28045967 + LTR47A LTR ERVL 1 452 0 219 273 182 0 chr21 16861777 16861854 -28045716 + L2 LINE L2 2152 2242 -1072 2793 177 9 45 chr21 16862213 16862789 -28044781 - MER41D LTR ERV1 0 557 3 201 352 107 4 chr21 16863013 16863246 -28044324 - L2 LINE L2 -1114 2200 1944 258 241 0 23 chr21 16866495 16866582 -28040988 + (TTAAA)n Simple_repeat Simple_repeat 1 85 0 210 37 0 0 chr21 16867796 16867823 -28039747 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2271 46 42 3 chr21 16868707 16868991 -28038579 + AluY SINE Alu 11 305 -6 1455 224 51 70 chr21 16870230 16870760 -28036810 - MLT2B1 LTR ERVL 0 520 1 1603 212 39 11 chr21 16871606 16871955 -28035615 - MLT1A1 LTR MaLR 0 365 5 2499 261 33 33 chr21 16872063 16872880 -28034690 - L1ME1 LINE L1 -41 6125 5309 2367 227 84 57 chr21 16872877 16873797 -28033773 + L1M4 LINE L1 3923 4867 -1279 * 5903 126 16 3 chr21 16873801 16874739 -28032831 - L1PA8A LINE L1 -1095 5051 4102 6275 89 9 3 chr21 16874740 16875775 -28031795 + L1PA8A LINE L1 5059 6104 -27 270 246 175 8 chr21 16875842 16875968 -28031602 + L1M4 LINE L1 4878 5024 -1122 355 291 25 77 chr21 16877007 16877203 -28030367 - MLT1J LTR MaLR -205 306 121 247 289 102 23 chr21 16877859 16877987 -28029583 - MLT1J LTR MaLR -391 158 21 1697 186 0 14 chr21 16878275 16878565 -28029005 + AluJb SINE Alu 1 286 -26 26 30 0 0 chr21 16878854 16878887 -28028683 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 16878924 16878983 -28028587 + MIR SINE MIR 64 123 -139 206 298 0 0 chr21 16879026 16879083 -28028487 + MIR SINE MIR 196 252 -10 365 170 150 0 chr21 16879108 16879208 -28028362 - LTR50 LTR ERVL -2 793 679 2244 105 8 45 chr21 16879223 16879575 -28027995 - SVA Other Other -191 1195 857 34481 38 0 0 chr21 16879575 16886566 -28021004 - HERVK LTR ERVK -95 7148 162 8101 55 1 0 chr21 16886566 16887531 -28020039 - LTR5 LTR ERVK -3 966 1 26 30 0 0 chr21 16887612 16887645 -28019925 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 16887682 16887741 -28019829 + MIR SINE MIR 64 123 -139 206 298 0 0 chr21 16887784 16887841 -28019729 + MIR SINE MIR 196 252 -10 865 230 158 20 chr21 16887866 16888462 -28019108 - LTR50 LTR ERVL -2 793 4 2120 111 16 13 chr21 16888531 16888838 -28018732 - AluSg SINE Alu -2 308 1 183 42 0 0 chr21 16888873 16888897 -28018673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 302 80 20 0 chr21 16890057 16890107 -28017463 + (GA)n Simple_repeat Simple_repeat 2 52 0 282 206 0 0 chr21 16890103 16890171 -28017399 + GA-rich Low_complexity Low_complexity 2 69 0 * 3348 117 2 34 chr21 16890523 16891060 -28016510 - L1PB2 LINE L1 -2 6149 5630 548 192 0 8 chr21 16891060 16891190 -28016380 + L1 LINE L1 5180 5308 -838 * 7637 179 30 22 chr21 16891183 16893072 -28014498 - L1PBb LINE L1 -2106 4097 2226 2116 111 3 3 chr21 16893072 16893370 -28014200 - AluY SINE Alu -13 298 1 7637 179 30 22 chr21 16893370 16895219 -28012351 - L1PBb LINE L1 -3977 2226 317 505 196 0 0 chr21 16895878 16895970 -28011600 - L1PBb LINE L1 -5421 783 692 243 0 0 0 chr21 16895970 16895997 -28011573 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 561 276 240 11 chr21 16896162 16896437 -28011133 + LTR16C LTR ERVL 97 434 -57 698 340 73 5 chr21 16897337 16897707 -28009863 + LTR16C LTR ERVL 97 491 0 225 333 93 0 chr21 16899108 16899183 -28008387 - L2 LINE L2 -46 3226 3145 1157 312 44 48 chr21 16900573 16901076 -28006494 + MER45C DNA AcHobo 3 503 -450 339 359 28 14 chr21 16901278 16901490 -28006080 - MIR SINE MIR 0 262 48 587 148 0 0 chr21 16903106 16903194 -28004376 + AluSp SINE Alu 132 219 -94 2377 41 0 7 chr21 16904125 16904417 -28003153 - AluY SINE Alu -21 290 1 845 328 34 7 chr21 16905732 16906025 -28001545 + LTR16A LTR ERVL 147 447 -3 273 119 0 0 chr21 16906384 16906426 -28001144 + (A)n Simple_repeat Simple_repeat 1 42 0 1945 311 81 59 chr21 16907739 16908985 -27998585 + L2 LINE L2 338 1610 -1704 372 368 116 18 chr21 16909561 16909898 -27997672 + MLT1K LTR MaLR 219 588 0 503 378 115 17 chr21 16910742 16911324 -27996246 + L3 LINE CR1 382 1020 -557 854 62 0 9 chr21 16911541 16911654 -27995916 - L1PA7 LINE L1 -5 6149 6038 1079 270 85 119 chr21 16912570 16914763 -27992807 - HAL1 LINE L1 -255 2252 133 4277 45 33 0 chr21 16914881 16915420 -27992150 + L1PA5 LINE L1 5598 6154 0 1723 105 0 123 chr21 16916289 16916622 -27990948 + AluSg1 SINE Alu 1 292 -17 198 0 0 0 chr21 16916710 16916732 -27990838 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6436 67 8 0 chr21 16916732 16917940 -27989630 - L1PA7 LINE L1 -18 6136 4903 208 158 35 35 chr21 16918068 16918125 -27989445 + CT-rich Low_complexity Low_complexity 4 60 0 21 36 0 0 chr21 16918702 16918730 -27988840 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 16919263 16919291 -27988279 + AT_rich Low_complexity Low_complexity 1 28 0 1434 193 10 53 chr21 16921102 16921403 -27986167 - AluJo SINE Alu -22 290 3 395 293 90 28 chr21 16921832 16922044 -27985526 - L2 LINE L2 0 3313 3089 225 132 15 29 chr21 16922095 16922163 -27985407 + (TTA)n Simple_repeat Simple_repeat 1 67 0 558 275 56 32 chr21 16922202 16922453 -27985117 - MIR SINE MIR -2 260 4 180 125 0 0 chr21 16922694 16922726 -27984844 + (CTTTG)n Simple_repeat Simple_repeat 3 34 0 1271 215 12 80 chr21 16923388 16923788 -27983782 + MLT1A2 LTR MaLR 1 373 -1 22 0 0 0 chr21 16924393 16924415 -27983155 + AT_rich Low_complexity Low_complexity 1 22 0 31 88 0 0 chr21 16925047 16925127 -27982443 + AT_rich Low_complexity Low_complexity 1 80 0 261 167 0 0 chr21 16927361 16927415 -27980155 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr21 16927642 16927663 -27979907 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 16927792 16927830 -27979740 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr21 16928558 16928590 -27978980 + AT_rich Low_complexity Low_complexity 1 32 0 249 342 74 27 chr21 16928719 16928868 -27978702 + L2 LINE L2 3158 3313 0 681 207 0 7 chr21 16929554 16929689 -27977881 + MLT1A1 LTR MaLR 13 146 -219 627 237 0 0 chr21 16929689 16929828 -27977742 + L1PB4 LINE L1 6017 6155 -1 335 327 136 20 chr21 16929878 16930077 -27977493 - MIR SINE MIR -40 222 1 1306 201 24 54 chr21 16930339 16930588 -27976982 - MSTD LTR MaLR 0 396 156 1616 123 0 0 chr21 16930588 16930816 -27976754 + AluSg/x SINE Alu 85 312 0 1306 201 24 54 chr21 16930816 16930864 -27976706 - MSTD LTR MaLR -240 156 108 704 368 20 0 chr21 16931070 16931372 -27976198 + MLT1I LTR MaLR 92 399 -10 414 245 22 86 chr21 16931384 16931418 -27976152 + MLT2E LTR ERVL 10 45 -583 369 0 0 0 chr21 16931418 16931459 -27976111 + (CA)n Simple_repeat Simple_repeat 2 42 0 1621 194 0 0 chr21 16931461 16931749 -27975821 - AluJb SINE Alu -24 288 1 414 245 22 86 chr21 16931749 16931850 -27975720 + MLT2E LTR ERVL 46 139 -489 278 274 17 26 chr21 16932044 16932161 -27975409 + MLT2F LTR ERVL 546 661 -2 373 322 79 0 chr21 16932207 16932359 -27975211 - MIR SINE MIR -50 212 49 22 0 0 0 chr21 16934699 16934721 -27972849 + AT_rich Low_complexity Low_complexity 1 22 0 235 357 32 24 chr21 16936982 16937108 -27970462 + L2 LINE L2 2931 3057 -215 254 266 77 70 chr21 16937920 16938232 -27969338 + HAL1 LINE L1 1033 1346 -1161 21 0 0 0 chr21 16938234 16938255 -27969315 + AT_rich Low_complexity Low_complexity 1 21 0 1584 215 24 53 chr21 16939858 16940313 -27967257 - LTR47B LTR ERVL -1 442 1 213 246 0 64 chr21 16941333 16941443 -27966127 + A-rich Low_complexity Low_complexity 3 105 0 1084 320 71 19 chr21 16941875 16942340 -27965230 - LTR16C LTR ERVL 0 491 3 451 307 53 30 chr21 16942802 16943102 -27964468 - L1ME LINE L1 -561 5889 5583 26 64 0 0 chr21 16943106 16943153 -27964417 + AT_rich Low_complexity Low_complexity 1 47 0 326 304 196 61 chr21 16943426 16943851 -27963719 - HAL1 LINE L1 -660 1847 1326 1565 37 0 0 chr21 16943851 16944042 -27963528 - L1PA3 LINE L1 0 6155 5965 326 304 196 61 chr21 16944042 16944176 -27963394 - HAL1 LINE L1 -1181 1326 1212 3410 246 134 85 chr21 16944913 16947119 -27960451 - L1MCa LINE L1 -3212 3214 811 1923 168 60 3 chr21 16947119 16947500 -27960070 + MER57A LTR ERV1 1 403 0 3410 246 134 85 chr21 16947500 16948327 -27959243 - L1MCa LINE L1 -5615 811 26 198 0 0 0 chr21 16948373 16948395 -27959175 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 23 54 0 0 chr21 16949691 16949728 -27957842 + AT_rich Low_complexity Low_complexity 1 37 0 991 288 116 74 chr21 16950110 16950626 -27956944 - MLT1G LTR MaLR -7 523 1 255 31 0 0 chr21 16950739 16950771 -27956799 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr21 16951162 16951202 -27956368 + AT_rich Low_complexity Low_complexity 1 40 0 180 320 67 27 chr21 16951448 16951523 -27956047 - L2 LINE L2 -33 3239 3162 27 0 0 0 chr21 16951741 16951768 -27955802 + AT_rich Low_complexity Low_complexity 1 27 0 4513 234 67 7 chr21 16951791 16953011 -27954559 + L1M2c LINE L1 2086 3462 -3326 1957 154 18 6 chr21 16953016 16953348 -27954222 + THE1C LTR MaLR 3 338 -37 11813 184 30 0 chr21 16953358 16953705 -27953865 + L1PA14 LINE L1 2815 3150 -3011 438 20 0 0 chr21 16953705 16953756 -27953814 + (CA)n Simple_repeat Simple_repeat 2 52 0 11813 184 30 0 chr21 16953756 16956694 -27950876 + L1PA14 LINE L1 3150 6148 -13 21 0 0 0 chr21 16956695 16956716 -27950854 + AT_rich Low_complexity Low_complexity 1 21 0 375 277 121 6 chr21 16956824 16956990 -27950580 - L1ME3A LINE L1 -207 5963 5779 218 81 27 0 chr21 16956998 16957035 -27950535 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 250 0 0 chr21 16957107 16957167 -27950403 + GA-rich Low_complexity Low_complexity 1 60 0 553 313 41 25 chr21 16957174 16957542 -27950028 - L1ME3A LINE L1 -533 5629 5256 547 357 101 2 chr21 16957560 16958005 -27949565 - L1ME3A LINE L1 -907 5239 4751 273 300 88 47 chr21 16958006 16958492 -27949078 - L1M4 LINE L1 -756 5390 4885 633 321 55 21 chr21 16959327 16960087 -27947483 - L1M4 LINE L1 -2923 3223 2438 * 1718 269 60 40 chr21 16960058 16960310 -27947260 - L1ME1 LINE L1 -5 6161 5916 2175 203 5 7 chr21 16960310 16960728 -27946842 - MER47B DNA MER2_type -1 417 1 1718 269 60 40 chr21 16960728 16961126 -27946444 - L1ME1 LINE L1 -250 5916 5498 205 178 0 22 chr21 16961463 16961508 -27946062 + MIR SINE MIR 217 260 -2 252 323 82 32 chr21 16962027 16962185 -27945385 + MIR SINE MIR 13 178 -84 849 249 61 97 chr21 16962263 16962822 -27944748 + MER34 LTR ERV1 1 539 -3 707 173 154 0 chr21 16963081 16963237 -27944333 - MLT1D LTR MaLR 0 505 326 2013 105 16 4 chr21 16963269 16963727 -27943843 - MER4A LTR ERV1 -2 662 170 299 125 0 0 chr21 16963733 16963781 -27943789 - MER4A LTR ERV1 -616 48 1 452 218 62 87 chr21 16963782 16964032 -27943538 - MLT1D LTR MaLR -198 269 19 2115 105 7 0 chr21 16965239 16965525 -27942045 - AluSg SINE Alu -11 299 12 258 388 18 24 chr21 16965581 16965751 -27941819 + MIR3 SINE MIR 28 196 -12 535 14 14 14 chr21 16966394 16966467 -27941103 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 22 0 0 0 chr21 16966537 16966559 -27941011 + AT_rich Low_complexity Low_complexity 1 22 0 384 252 94 31 chr21 16967031 16967190 -27940380 - MIR SINE MIR -8 254 86 325 171 122 0 chr21 16967455 16967537 -27940033 + MER58B DNA MER1_type 39 130 -211 995 243 14 0 chr21 16968030 16968252 -27939318 + MER58B DNA MER1_type 116 340 -1 841 241 0 0 chr21 16968634 16968800 -27938770 + FRAM SINE Alu 1 166 0 21 104 0 0 chr21 16969766 16969843 -27937727 + AT_rich Low_complexity Low_complexity 1 77 0 972 201 50 39 chr21 16970074 16970203 -27937367 + MSTD LTR MaLR 23 149 -247 2067 131 3 0 chr21 16970203 16970508 -27937062 + AluSx SINE Alu 1 306 -6 972 201 50 39 chr21 16970508 16970705 -27936865 + MSTD LTR MaLR 149 396 0 266 325 50 25 chr21 16971636 16971796 -27935774 - MIR SINE MIR -12 250 87 185 327 39 29 chr21 16971939 16972043 -27935527 + L3 LINE CR1 849 953 -624 354 343 62 72 chr21 16972095 16972245 -27935325 + L3 LINE CR1 970 1120 -457 2155 114 0 19 chr21 16972245 16972560 -27935010 + AluSg SINE Alu 1 309 -1 354 343 62 72 chr21 16972560 16972782 -27934788 + L3 LINE CR1 1120 1338 -239 26 30 0 0 chr21 16973510 16973543 -27934027 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 16973862 16973883 -27933687 + AT_rich Low_complexity Low_complexity 1 21 0 761 148 35 9 chr21 16974702 16974862 -27932708 - L1PA16 LINE L1 -439 5726 5555 * 1770 169 73 5 chr21 16974849 16975253 -27932317 + L1PA16 LINE L1 5700 6166 0 21 0 0 0 chr21 16975287 16975308 -27932262 + AT_rich Low_complexity Low_complexity 1 21 0 2432 81 0 3 chr21 16975308 16975617 -27931953 - AluY SINE Alu -3 308 1 1941 255 65 34 chr21 16977024 16977780 -27929790 - L1ME1 LINE L1 -5 6230 5452 343 262 0 10 chr21 16977760 16977863 -27929707 - L1ME1 LINE L1 -6259 137 36 * 209 135 27 0 chr21 16977888 16977925 -27929645 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 252 314 128 0 chr21 16978246 16978348 -27929222 + L2 LINE L2 3199 3313 0 21 57 0 0 chr21 16978385 16978420 -27929150 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr21 16978682 16978733 -27928837 + AT_rich Low_complexity Low_complexity 1 51 0 327 79 13 158 chr21 16979892 16979968 -27927602 + MER4E LTR ERV1 1 65 -545 186 43 0 0 chr21 16980060 16980083 -27927487 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2858 115 24 12 chr21 16980100 16980639 -27926931 + MER4E LTR ERV1 56 766 0 3775 241 21 47 chr21 16980898 16981922 -27925648 - MSTD-int LTR MaLR -736 999 2 1366 221 33 40 chr21 16981924 16982323 -27925247 - MSTD LTR MaLR 0 396 1 282 277 0 12 chr21 16982334 16982417 -27925153 - MLT1E2 LTR MaLR -340 286 205 2488 54 0 0 chr21 16982988 16983285 -27924285 - AluY SINE Alu -10 301 5 21 0 0 0 chr21 16986378 16986399 -27921171 + AT_rich Low_complexity Low_complexity 1 21 0 451 329 101 14 chr21 16986571 16986790 -27920780 + MLT1J LTR MaLR 96 333 -178 374 271 138 41 chr21 16986790 16987130 -27920440 + L1M4 LINE L1 4446 4818 -1328 2470 61 0 6 chr21 16987177 16987490 -27920080 + AluY SINE Alu 1 311 0 435 38 0 0 chr21 16987993 16988046 -27919524 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2527 213 29 13 chr21 16988053 16988574 -27918996 + LTR31 LTR ERV1 75 603 -16 1605 178 110 10 chr21 16988586 16988985 -27918585 + L1MA3 LINE L1 3323 3761 -2385 1082 108 7 0 chr21 16988986 16989134 -27918436 - AluSq/x SINE Alu -164 149 1 6543 151 18 10 chr21 16989134 16991092 -27916478 + L1MA3 LINE L1 4323 6295 -10 23 0 0 0 chr21 16991396 16991419 -27916151 + AT_rich Low_complexity Low_complexity 1 23 0 517 91 0 0 chr21 16991713 16991790 -27915780 - L1MA1 LINE L1 -2 6300 6224 300 232 50 61 chr21 16992755 16992854 -27914716 - L1MC4 LINE L1 -1332 6710 6613 204 167 24 0 chr21 16992860 16992902 -27914668 + (TA)n Simple_repeat Simple_repeat 1 43 0 1124 281 60 50 chr21 16993531 16994086 -27913484 + L1MEc LINE L1 39 598 -5798 888 209 5 24 chr21 16994090 16994296 -27913274 + L1MD3 LINE L1 7778 7979 -16 411 290 16 88 chr21 16994288 16994668 -27912902 + L1ME3A LINE L1 5324 5676 -494 * 343 318 46 29 chr21 16994807 16994980 -27912590 + L1ME3A LINE L1 5965 6140 -30 317 284 0 0 chr21 16995656 16995744 -27911826 - MER69 DNA AcHobo 0 2526 2439 330 250 157 0 chr21 16995753 16995861 -27911709 - MER69 DNA AcHobo -1094 132 8 2121 317 50 55 chr21 16999778 17000813 -27906757 - L2 LINE L2 -1007 2307 1278 2344 72 0 25 chr21 17000813 17001132 -27906438 - AluY SINE Alu 0 311 1 2121 317 50 55 chr21 17001132 17001286 -27906284 - L2 LINE L2 -2036 1278 1125 1377 171 212 20 chr21 17001502 17001718 -27905852 - MLT1C LTR MaLR 0 467 294 222 37 0 0 chr21 17001718 17001745 -27905825 + (TG)n Simple_repeat Simple_repeat 2 28 0 1377 171 212 20 chr21 17001745 17001920 -27905650 - MLT1C LTR MaLR -173 294 1 432 401 18 9 chr21 17002186 17002520 -27905050 + L1MEc LINE L1 43 379 -6017 1347 193 19 57 chr21 17002654 17003011 -27904559 + AluJb SINE Alu 5 349 0 315 317 68 9 chr21 17003018 17003239 -27904331 + L1MEc LINE L1 1538 1771 -4625 2273 264 52 4 chr21 17003500 17004057 -27903513 - MER45B DNA AcHobo -455 585 2 1239 286 20 35 chr21 17004076 17004313 -27903257 + L1M4 LINE L1 4059 4298 -1848 507 117 13 0 chr21 17004313 17004390 -27903180 - MADE1 DNA Mariner -2 78 1 1239 286 20 35 chr21 17004390 17004809 -27902761 + L1M4 LINE L1 4298 4910 -1236 1825 146 34 71 chr21 17005062 17005440 -27902130 - THE1B LTR MaLR 0 364 1 886 226 20 15 chr21 17006732 17006936 -27900634 + MLT2C2 LTR ERVL 1 205 -259 1819 221 69 13 chr21 17007032 17007484 -27900086 + ERVL LTR ERVL 761 1237 -4527 605 164 27 68 chr21 17007493 17007639 -27899931 - ERVL LTR ERVL -4027 1737 1598 1954 209 78 7 chr21 17007640 17008061 -27899509 + ERVL LTR ERVL 1719 2169 -3595 1856 202 9 3 chr21 17008056 17008402 -27899168 + ERVL LTR ERVL 2368 2715 -3049 * 319 243 0 0 chr21 17008405 17008475 -27899095 + ERVL LTR ERVL 2646 2715 -3049 336 231 0 0 chr21 17008478 17008543 -27899027 + ERVL LTR ERVL 2646 2710 -3054 295 258 0 0 chr21 17008555 17008621 -27898949 + ERVL LTR ERVL 2650 2715 -3049 339 246 0 0 chr21 17008625 17008694 -27898876 + ERVL LTR ERVL 2647 2715 -3049 337 243 0 0 chr21 17008770 17008840 -27898730 + ERVL LTR ERVL 2646 2715 -3049 347 243 0 0 chr21 17008843 17008913 -27898657 + ERVL LTR ERVL 2646 2715 -3049 324 261 0 0 chr21 17008917 17008986 -27898584 + ERVL LTR ERVL 2647 2715 -3049 371 214 0 0 chr21 17008989 17009059 -27898511 + ERVL LTR ERVL 2646 2715 -3049 3168 63 65 0 chr21 17009075 17009519 -27898051 - L1P LINE L1 -1460 4686 4214 1944 116 50 47 chr21 17009999 17010041 -27897529 - THE1B LTR MaLR 0 364 324 1934 125 6 41 chr21 17010041 17010361 -27897209 + AluSg SINE Alu 1 309 -1 1944 116 50 47 chr21 17010361 17010681 -27896889 - THE1B LTR MaLR -40 324 1 11203 108 6 7 chr21 17010681 17012262 -27895308 - THE1B-int LTR MaLR 0 1580 1 1852 113 96 38 chr21 17012262 17012606 -27894964 - THE1B LTR MaLR 0 364 1 411 348 67 42 chr21 17012918 17013320 -27894250 - L1ME3A LINE L1 -286 5884 5473 3787 153 68 9 chr21 17013528 17013753 -27893817 + L1MA9 LINE L1 5531 5741 -571 288 0 0 0 chr21 17013753 17013785 -27893785 + (CA)n Simple_repeat Simple_repeat 1 32 0 3787 153 68 9 chr21 17013785 17014293 -27893277 + L1MA9 LINE L1 5741 6307 -5 1229 154 14 36 chr21 17014372 17014389 -27893181 - AluJb SINE Alu -13 299 283 207 0 0 0 chr21 17014389 17014412 -27893158 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1229 154 14 36 chr21 17014412 17014615 -27892955 - AluJb SINE Alu -29 283 84 334 271 110 55 chr21 17014670 17014925 -27892645 + L1ME2 LINE L1 4233 4501 -1645 244 239 45 0 chr21 17015058 17015146 -27892424 + (TA)n Simple_repeat Simple_repeat 2 93 0 266 245 19 0 chr21 17015148 17015201 -27892369 + Tigger5 DNA MER2_type 2 55 -2268 * 406 178 14 14 chr21 17015171 17015244 -27892326 + Tigger5 DNA MER2_type 2251 2323 0 2281 260 70 27 chr21 17015265 17016063 -27891507 + L1ME2 LINE L1 4984 5847 -317 180 0 0 0 chr21 17016063 17016083 -27891487 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2281 260 70 27 chr21 17016083 17016396 -27891174 + L1ME2 LINE L1 5847 6145 -19 820 172 25 0 chr21 17016662 17016819 -27890751 + MER47A DNA MER2_type 61 221 -145 23 0 0 0 chr21 17016913 17016936 -27890634 + AT_rich Low_complexity Low_complexity 1 23 0 1787 163 28 9 chr21 17017869 17018189 -27889381 + MER47A DNA MER2_type 2 327 -39 2951 162 16 16 chr21 17018192 17018704 -27888866 + MSTA-int LTR MaLR 1063 1574 -6 2040 139 132 5 chr21 17018709 17019089 -27888481 + MSTA LTR MaLR 1 428 0 256 200 0 0 chr21 17019096 17019146 -27888424 - MER20 DNA MER1_type -169 50 1 921 264 110 36 chr21 17019562 17019899 -27887671 - MLT1A1 LTR MaLR 0 365 4 369 239 141 36 chr21 17020244 17020431 -27887139 + L1ME2 LINE L1 5919 6130 -34 42 48 0 0 chr21 17020445 17020508 -27887062 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr21 17020700 17020743 -27886827 + AT_rich Low_complexity Low_complexity 1 43 0 434 275 46 60 chr21 17021437 17021682 -27885888 + L1MD3 LINE L1 7337 7670 -325 507 246 103 10 chr21 17021697 17021892 -27885678 + L1MC4 LINE L1 7685 7897 -145 1914 173 21 0 chr21 17022047 17022383 -27885187 + MER2 DNA MER2_type 2 344 0 325 314 127 20 chr21 17022387 17022598 -27884972 + L1ME LINE L1 4068 4312 -1834 431 133 40 0 chr21 17022598 17022673 -27884897 - MADE1 DNA Mariner -2 78 1 325 314 127 20 chr21 17022673 17022713 -27884857 + L1ME LINE L1 4312 4346 -1800 45 87 0 0 chr21 17022749 17022864 -27884706 + AT_rich Low_complexity Low_complexity 1 115 0 1111 223 59 74 chr21 17022901 17023238 -27884332 + MLT2D LTR ERVL 83 414 0 331 244 101 29 chr21 17023241 17023450 -27884120 + L1ME LINE L1 4385 4608 -1538 237 315 0 0 chr21 17023583 17023675 -27883895 + L1ME LINE L1 4740 4831 -1315 445 305 97 18 chr21 17024030 17024379 -27883191 + L1ME LINE L1 5344 5643 -519 1808 150 85 21 chr21 17024379 17024719 -27882851 + THE1B LTR MaLR 1 362 -2 1040 184 0 39 chr21 17024895 17025101 -27882469 + Tigger2a DNA MER2_type 1 198 -236 239 275 9 0 chr21 17025103 17025212 -27882358 + CT-rich Low_complexity Low_complexity 1 110 0 1839 143 41 0 chr21 17025212 17025506 -27882064 - AluSx SINE Alu -6 306 1 1041 141 218 0 chr21 17025506 17025712 -27881858 + Tigger2a DNA MER2_type 183 433 -1 21 0 0 0 chr21 17026872 17026893 -27880677 + AT_rich Low_complexity Low_complexity 1 21 0 29 84 0 0 chr21 17026941 17027012 -27880558 + AT_rich Low_complexity Low_complexity 1 71 0 306 268 142 24 chr21 17027076 17027203 -27880367 + MER20 DNA MER1_type 37 178 -41 523 290 139 25 chr21 17027570 17027815 -27879755 + L2 LINE L2 2023 2295 -1019 289 333 39 46 chr21 17027892 17028045 -27879525 + L2 LINE L2 2301 2452 -862 991 145 0 10 chr21 17028200 17028393 -27879177 + L1MA6 LINE L1 6110 6300 0 339 316 110 59 chr21 17028417 17028943 -27878627 + L1M4 LINE L1 3731 4283 -1863 280 323 88 26 chr21 17029088 17029590 -27877980 + L1M4 LINE L1 4473 5005 -1141 1771 150 82 20 chr21 17029700 17030053 -27877517 + THE1C LTR MaLR 1 375 0 9582 118 36 46 chr21 17030053 17031649 -27875921 + THE1C-int LTR MaLR 1 1580 0 1945 132 76 20 chr21 17031649 17032004 -27875566 + THE1C LTR MaLR 1 375 0 2005 131 0 7 chr21 17032324 17032614 -27874956 + AluSc SINE Alu 1 288 -21 236 190 0 17 chr21 17033021 17033079 -27874491 + L1MC4 LINE L1 6647 6703 -1339 253 190 38 0 chr21 17033283 17033362 -27874208 + CT-rich Low_complexity Low_complexity 2 83 0 264 130 0 0 chr21 17034535 17034581 -27872989 + (TG)n Simple_repeat Simple_repeat 1 46 0 246 136 0 0 chr21 17034900 17034944 -27872626 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1519 237 17 11 chr21 17035543 17035902 -27871668 - MLT1A1 LTR MaLR 0 365 5 383 211 39 0 chr21 17037292 17037396 -27870174 - Charlie5 DNA MER1_type 0 2624 2517 1711 214 88 38 chr21 17037454 17037931 -27869639 + MER21B LTR ERV1 147 647 -216 225 261 54 43 chr21 17037995 17038087 -27869483 + MER21B LTR ERV1 646 738 -125 22 35 0 0 chr21 17038898 17038927 -27868643 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 17039021 17039056 -27868514 + AT_rich Low_complexity Low_complexity 1 35 0 3476 155 43 41 chr21 17039723 17040447 -27867123 + LTR8A LTR ERV1 3 727 0 318 269 97 30 chr21 17040716 17040850 -27866720 + MIR SINE MIR 110 252 -10 189 74 0 0 chr21 17040851 17040878 -27866692 + (TTA)n Simple_repeat Simple_repeat 1 27 0 663 263 27 49 chr21 17042339 17042563 -27865007 + MER20 DNA MER1_type 1 219 0 3126 253 104 41 chr21 17042639 17043530 -27864040 + L1MA4A LINE L1 1 991 -6218 2332 32 0 0 chr21 17043530 17043807 -27863763 + L1PA4 LINE L1 5876 6153 -2 3126 253 104 41 chr21 17043807 17044135 -27863435 + L1MA4A LINE L1 991 1297 -5912 * 10965 179 26 48 chr21 17044131 17044560 -27863010 + L1MA4A LINE L1 3796 4233 -3132 547 191 118 0 chr21 17044560 17044670 -27862900 - FLAM_C SINE Alu -10 123 1 10965 179 26 48 chr21 17044670 17047647 -27859923 + L1MA4A LINE L1 4233 7120 -245 284 271 159 9 chr21 17047885 17047992 -27859578 + L2 LINE L2 3191 3313 0 21 57 0 0 chr21 17049058 17049093 -27858477 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr21 17049549 17049591 -27857979 + AT_rich Low_complexity Low_complexity 1 42 0 3188 111 43 11 chr21 17049760 17050294 -27857276 - L1MA2 LINE L1 0 6304 5754 2016 138 45 17 chr21 17050296 17050650 -27856920 + THE1B LTR MaLR 1 364 0 10777 109 4 1 chr21 17050653 17052136 -27855434 + THE1B-int LTR MaLR 94 1580 0 1815 186 49 9 chr21 17052136 17052486 -27855084 + THE1B LTR MaLR 1 364 0 5990 166 33 15 chr21 17052486 17054148 -27853422 - L1MA2 LINE L1 -567 5737 4049 1406 195 19 39 chr21 17054328 17054636 -27852934 + AluJb SINE Alu 11 312 0 27 0 0 0 chr21 17055234 17055261 -27852309 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 17056482 17056505 -27851065 + AT_rich Low_complexity Low_complexity 1 23 0 289 308 48 10 chr21 17056618 17056722 -27850848 - MER94 DNA DNA -24 110 3 357 24 0 0 chr21 17059925 17059967 -27847603 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 157 57 0 chr21 17060743 17060813 -27846757 - MER53 DNA DNA 0 189 116 * 335 115 141 0 chr21 17060753 17060831 -27846739 + MER53 DNA DNA 20 108 -81 296 357 177 20 chr21 17062962 17063701 -27843869 + L2 LINE L2 1758 2612 -702 254 236 32 0 chr21 17063910 17064033 -27843537 + (TA)n Simple_repeat Simple_repeat 2 128 0 24 32 0 0 chr21 17064061 17064092 -27843478 + AT_rich Low_complexity Low_complexity 1 31 0 203 167 62 7 chr21 17064138 17064282 -27843288 + (TA)n Simple_repeat Simple_repeat 1 152 0 286 129 32 0 chr21 17064404 17064466 -27843104 + (TA)n Simple_repeat Simple_repeat 2 65 0 300 303 0 37 chr21 17064470 17064579 -27842991 - L1MC4 LINE L1 -1339 6703 6599 339 171 0 0 chr21 17064582 17064658 -27842912 + (TA)n Simple_repeat Simple_repeat 2 77 0 632 289 81 49 chr21 17065475 17066144 -27841426 - L1ME3A LINE L1 -224 5946 5257 2291 114 0 3 chr21 17066257 17066564 -27841006 - AluSx SINE Alu -6 306 1 31 26 0 0 chr21 17066596 17066634 -27840936 + AT_rich Low_complexity Low_complexity 1 38 0 1654 206 8 48 chr21 17066634 17067007 -27840563 - MER52A LTR ERV1 -1397 358 1 1149 212 30 8 chr21 17067091 17067355 -27840215 + L1MD3 LINE L1 7574 7843 -152 809 212 26 37 chr21 17067359 17067635 -27839935 - MER4C LTR ERV1 0 465 276 597 211 197 23 chr21 17067759 17067977 -27839593 - MER4C LTR ERV1 -209 256 1 6495 168 47 20 chr21 17068040 17069207 -27838363 + MER52A LTR ERV1 557 1755 0 1784 147 184 20 chr21 17069342 17069689 -27837881 - MER4A LTR ERV1 0 664 261 648 121 0 10 chr21 17069689 17069788 -27837782 - MER4A LTR ERV1 -566 98 1 2587 46 0 0 chr21 17069797 17070103 -27837467 - AluY SINE Alu -5 306 1 262 311 38 15 chr21 17070384 17070516 -27837054 - L1MEd LINE L1 -5812 307 173 22 35 0 0 chr21 17070562 17070591 -27836979 + AT_rich Low_complexity Low_complexity 1 29 0 551 245 0 0 chr21 17070859 17070965 -27836605 + MER46B DNA MER2_type 1 106 -255 5983 67 13 13 chr21 17070967 17071745 -27835825 - LTR17 LTR ERV1 -2 778 1 2323 68 0 0 chr21 17071745 17072037 -27835533 - HERV17 LTR ERV1 0 8626 8335 299 51 0 0 chr21 17072027 17072066 -27835504 - HERV17 LTR ERV1 -1078 7548 7510 * 47722 60 11 2 chr21 17072059 17078028 -27829542 - HERV17 LTR ERV1 -2607 6019 1 5782 79 18 13 chr21 17078028 17078772 -27828798 - LTR17 LTR ERV1 -32 748 1 1237 165 89 0 chr21 17078772 17079008 -27828562 + MER46B DNA MER2_type 103 234 -2 25 0 0 0 chr21 17079311 17079336 -27828234 + AT_rich Low_complexity Low_complexity 1 25 0 1493 186 32 32 chr21 17079890 17080175 -27827395 + AluJo SINE Alu 4 288 -24 23 33 0 0 chr21 17080217 17080247 -27827323 + AT_rich Low_complexity Low_complexity 1 30 0 970 189 77 20 chr21 17080450 17080786 -27826784 - MSTD LTR MaLR 0 396 1 5410 275 47 28 chr21 17080791 17082488 -27825082 - MSTD-int LTR MaLR -6 1729 2 878 277 25 16 chr21 17082490 17082825 -27824745 - MSTD LTR MaLR 0 396 2 3760 114 35 122 chr21 17082870 17083730 -27823840 + LTR1 LTR ERV1 1 785 0 1714 180 41 39 chr21 17085402 17085791 -27821779 - MLT1B LTR MaLR 0 390 1 608 236 52 47 chr21 17086376 17086567 -27821003 + MIR SINE MIR 60 251 -11 1390 214 83 32 chr21 17087148 17087555 -27820015 + MSTC LTR MaLR 1 428 0 23 0 0 0 chr21 17089327 17089350 -27818220 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 17089632 17089654 -27817916 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 17091506 17091547 -27816023 + AT_rich Low_complexity Low_complexity 1 41 0 2724 205 16 4 chr21 17091685 17092201 -27815369 + Tigger7 DNA MER2_type 4 525 -208 559 139 58 0 chr21 17092195 17092281 -27815289 + Tigger7 DNA MER2_type 2396 2486 -1 * 2369 205 90 14 chr21 17092783 17093359 -27814211 + LTR28 LTR ERV1 1 620 -400 4263 233 84 28 chr21 17094315 17095217 -27812353 - Charlie1a DNA MER1_type -1320 1441 435 2076 189 153 10 chr21 17095217 17095708 -27811862 - MER68 LTR ERV1 -1 561 1 4263 233 84 28 chr21 17095708 17096169 -27811401 - Charlie1a DNA MER1_type -2326 435 1 1840 125 0 0 chr21 17096531 17096787 -27810783 - AluSx SINE Alu -17 295 40 187 297 41 128 chr21 17096996 17097505 -27810065 + L2 LINE L2 2486 2950 -364 248 354 23 23 chr21 17097700 17097830 -27809740 + L2 LINE L2 3134 3263 -9 494 221 8 0 chr21 17097843 17097965 -27809605 + L1M4 LINE L1 4745 4867 -1279 1684 127 52 0 chr21 17097979 17098231 -27809339 + MER41C LTR ERV1 1 265 -289 1975 119 0 0 chr21 17098233 17098501 -27809069 + AluSx SINE Alu 1 268 -44 628 93 0 0 chr21 17098501 17098587 -27808983 + AluSg/x SINE Alu 219 304 -8 1497 156 41 0 chr21 17098589 17098858 -27808712 + MER41C LTR ERV1 273 552 -2 341 182 0 26 chr21 17098869 17098946 -27808624 - THE1A LTR MaLR -97 258 184 201 161 36 18 chr21 17099079 17099135 -27808435 + (TA)n Simple_repeat Simple_repeat 2 58 0 1952 209 21 5 chr21 17099135 17099560 -27808010 + Tigger2a DNA MER2_type 2 433 -1 21 57 0 0 chr21 17101362 17101397 -27806173 + AT_rich Low_complexity Low_complexity 1 35 0 2439 119 16 3 chr21 17101823 17102193 -27805377 - THE1C LTR MaLR 0 375 1 1543 149 38 101 chr21 17103660 17103933 -27803637 - L1MA8 LINE L1 -3 6288 6048 1826 165 10 0 chr21 17103933 17104224 -27803346 + AluSx SINE Alu 1 294 -18 1543 149 38 101 chr21 17104224 17104367 -27803203 - L1MA8 LINE L1 -243 6048 5898 648 282 56 30 chr21 17104577 17104811 -27802759 + MIR SINE MIR 20 259 -3 311 388 104 13 chr21 17105088 17105472 -27802098 + L2 LINE L2 2440 2858 -456 200 299 103 0 chr21 17105765 17105852 -27801718 + L2 LINE L2 3208 3303 -10 4375 36 0 1 chr21 17106414 17107033 -27800537 - L1PA4 LINE L1 -713 5442 4869 5882 37 1 0 chr21 17107033 17107733 -27799837 + L1PA4 LINE L1 5447 6155 0 297 0 0 0 chr21 17108642 17108675 -27798895 + (CA)n Simple_repeat Simple_repeat 2 34 0 421 305 44 22 chr21 17108950 17109176 -27798394 - L1ME3A LINE L1 -315 5855 5625 514 104 13 0 chr21 17109281 17109358 -27798212 + MADE1 DNA Mariner 1 78 -2 2411 105 19 11 chr21 17109377 17109738 -27797832 + THE1C LTR MaLR 1 364 -11 23 0 0 0 chr21 17109874 17109897 -27797673 + AT_rich Low_complexity Low_complexity 1 23 0 781 72 13 2 chr21 17110020 17110257 -27797313 - AluY SINE Alu -13 298 1 21 0 0 0 chr21 17110264 17110285 -27797285 + AT_rich Low_complexity Low_complexity 1 21 0 342 290 119 44 chr21 17110383 17110745 -27796825 - L1ME3A LINE L1 -1006 5140 4752 334 252 50 131 chr21 17110769 17111090 -27796480 - L1ME3A LINE L1 -1364 4782 4488 6298 150 49 12 chr21 17111170 17111763 -27795807 + Tigger3b DNA MER2_type 40 610 -2418 2241 108 0 3 chr21 17111763 17112070 -27795500 - AluSc SINE Alu -3 306 1 6298 150 49 12 chr21 17112070 17112625 -27794945 + Tigger3b DNA MER2_type 610 1230 -1 392 300 73 66 chr21 17112651 17114009 -27793561 - L1ME3A LINE L1 -1777 4369 3003 2025 165 88 0 chr21 17114061 17114425 -27793145 + MER57A LTR ERV1 8 403 0 298 368 138 41 chr21 17114438 17114716 -27792854 - L2 LINE L2 -484 2830 2580 1897 138 0 0 chr21 17114716 17114984 -27792586 + AluSx SINE Alu 1 268 -44 378 42 0 0 chr21 17114984 17115032 -27792538 + (CA)n Simple_repeat Simple_repeat 1 48 0 298 368 138 41 chr21 17115032 17115516 -27792054 - L2 LINE L2 -734 2580 2144 2094 141 22 33 chr21 17115516 17115884 -27791686 + THE1B LTR MaLR 1 364 0 11331 93 19 3 chr21 17115884 17117438 -27790132 + THE1B-int LTR MaLR 1 1580 0 2135 114 24 38 chr21 17117438 17117807 -27789763 + THE1B LTR MaLR 1 364 0 298 368 138 41 chr21 17117807 17118592 -27788978 - L2 LINE L2 -1169 2145 1128 2347 46 7 0 chr21 17119092 17119375 -27788195 - AluSc SINE Alu -9 300 16 2203 121 0 9 chr21 17119980 17120295 -27787275 - AluSx SINE Alu 0 312 1 21 0 0 0 chr21 17121171 17121192 -27786378 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 17121603 17121626 -27785944 + AT_rich Low_complexity Low_complexity 1 23 0 2672 189 9 2 chr21 17121633 17122307 -27785263 - MER72 LTR ERV1 -7 715 5 3893 57 14 2 chr21 17122384 17122891 -27784679 + LTR10D LTR ERV1 1 513 0 821 310 56 14 chr21 17123331 17123763 -27783807 + HAL1 LINE L1 1391 1840 -667 2638 165 9 0 chr21 17123816 17124271 -27783299 + L1PB3 LINE L1 5689 6147 -7 25 31 0 0 chr21 17124644 17124676 -27782894 + AT_rich Low_complexity Low_complexity 1 32 0 638 320 225 32 chr21 17125055 17125605 -27781965 + L2 LINE L2 1612 2054 -1260 249 108 0 0 chr21 17125605 17125642 -27781928 + (CA)n Simple_repeat Simple_repeat 2 38 0 638 320 225 32 chr21 17125642 17125965 -27781605 + L2 LINE L2 2054 2654 -660 2396 171 5 3 chr21 17126272 17126657 -27780913 - MSTA LTR MaLR 0 428 43 6557 86 5 2 chr21 17126657 17127522 -27780048 + HERVL-A2 LTR ERVL 4788 5654 0 3190 106 11 9 chr21 17127522 17127974 -27779596 + MLT2A2 LTR ERVL 1 453 0 5997 212 15 10 chr21 17127975 17129178 -27778392 - MSTA-int LTR MaLR -442 1209 1 2240 155 2 60 chr21 17129180 17129632 -27777938 - MSTA LTR MaLR -2 426 1 1427 291 58 81 chr21 17129673 17130547 -27777023 - L2 LINE L2 -517 2797 1944 1361 151 51 118 chr21 17130627 17130946 -27776624 + THE1C LTR MaLR 29 321 -54 1457 173 68 0 chr21 17130946 17131224 -27776346 - AluSx SINE Alu -2 310 14 1361 151 51 118 chr21 17131224 17131276 -27776294 + THE1C LTR MaLR 321 375 0 779 299 25 66 chr21 17131282 17131600 -27775970 - L2 LINE L2 -1529 1785 1481 761 306 186 14 chr21 17131738 17132187 -27775383 + L2 LINE L2 2789 3313 0 312 297 112 32 chr21 17132245 17132494 -27775076 + HAL1 LINE L1 2231 2499 -8 339 294 91 28 chr21 17132905 17133048 -27774522 + MIR SINE MIR 95 246 -16 21 0 0 0 chr21 17133063 17133084 -27774486 + AT_rich Low_complexity Low_complexity 1 21 0 350 173 13 0 chr21 17133414 17133489 -27774081 + (TG)n Simple_repeat Simple_repeat 1 76 0 378 88 0 18 chr21 17133967 17134024 -27773546 + MSTA LTR MaLR 5 60 -368 264 265 95 41 chr21 17135575 17135722 -27771848 + MER103 DNA DNA 11 165 -1 21 0 0 0 chr21 17137184 17137205 -27770365 + AT_rich Low_complexity Low_complexity 1 21 0 679 308 97 27 chr21 17138319 17138650 -27768920 - LTR16A LTR ERVL -2 448 95 21 26 0 26 chr21 17138736 17138751 -27768819 + AT_rich Low_complexity Low_complexity 1 15 -23 2477 65 0 0 chr21 17138751 17139060 -27768510 - AluY SINE Alu -2 309 1 21 26 0 26 chr21 17139060 17139083 -27768487 + AT_rich Low_complexity Low_complexity 15 38 0 22 0 0 0 chr21 17139106 17139128 -27768442 + AT_rich Low_complexity Low_complexity 1 22 0 6781 71 3 5 chr21 17139129 17140811 -27766759 - L1PA8 LINE L1 -8 6164 4481 533 74 0 37 chr21 17140813 17140894 -27766676 + L1PA8 LINE L1 4388 4465 -1681 233 139 0 0 chr21 17141264 17141300 -27766270 + U2 snRNA snRNA 1 36 -152 245 390 34 8 chr21 17143767 17143885 -27763685 - LTR67 LTR ERVL -333 224 104 247 64 21 21 chr21 17144807 17144854 -27762716 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr21 17145548 17145571 -27761999 + AT_rich Low_complexity Low_complexity 1 23 0 234 192 0 0 chr21 17145633 17145685 -27761885 + GA-rich Low_complexity Low_complexity 2 53 0 186 209 0 0 chr21 17145984 17146027 -27761543 + A-rich Low_complexity Low_complexity 2 44 0 2008 117 0 3 chr21 17146183 17146507 -27761063 - AluSx SINE Alu 0 323 1 32 0 0 0 chr21 17147072 17147104 -27760466 + AT_rich Low_complexity Low_complexity 1 32 0 973 236 39 34 chr21 17147158 17147708 -27759862 - MER114 LTR ERV 0 648 45 37 23 0 0 chr21 17147829 17147873 -27759697 + AT_rich Low_complexity Low_complexity 1 44 0 2311 75 7 0 chr21 17147893 17148201 -27759369 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 17150026 17150049 -27757521 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1770 220 9 28 chr21 17151012 17151434 -27756136 + MLT2D LTR ERVL 1 414 0 204 0 54 27 chr21 17151985 17152022 -27755548 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6090 82 17 2 chr21 17152024 17152863 -27754707 - L1PA8A LINE L1 -27 6104 5254 3749 107 9 0 chr21 17152861 17153405 -27754165 + L1PA8A LINE L1 4700 5248 -898 * 12491 250 35 12 chr21 17153403 17158656 -27748914 - L1PA16 LINE L1 -45 7559 2179 533 368 14 18 chr21 17158845 17159065 -27748505 - L1PA16 LINE L1 -6568 1006 788 23 33 0 0 chr21 17160614 17160644 -27746926 + AT_rich Low_complexity Low_complexity 1 30 0 321 313 65 60 chr21 17161474 17161675 -27745895 - MLT1H LTR MaLR -242 307 106 707 249 92 0 chr21 17162855 17163028 -27744542 + LTR16A LTR ERVL 253 441 -9 658 265 26 57 chr21 17163267 17163497 -27744073 - MIR SINE MIR -39 223 1 2355 170 16 21 chr21 17163498 17163934 -27743636 - Tigger2a DNA MER2_type 0 434 1 228 313 65 32 chr21 17164043 17164260 -27743310 - L2 LINE L2 -963 2351 2128 666 146 0 0 chr21 17164278 17164381 -27743189 + FLAM_A SINE Alu 18 120 -22 180 0 0 0 chr21 17164381 17164401 -27743169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 27 92 0 0 chr21 17164942 17165018 -27742552 + AT_rich Low_complexity Low_complexity 1 76 0 21 36 0 0 chr21 17165663 17165691 -27741879 + AT_rich Low_complexity Low_complexity 1 28 0 2045 106 7 3 chr21 17165981 17166273 -27741297 + AluSc SINE Alu 1 293 -16 825 142 52 0 chr21 17166445 17166579 -27740991 + THE1-int LTR MaLR 150 290 -1290 1317 267 108 47 chr21 17166677 17167255 -27740315 + L1MDa LINE L1 33 953 -5587 1710 161 28 34 chr21 17167322 17167675 -27739895 + THE1C LTR MaLR 25 375 0 9779 133 13 44 chr21 17167701 17169323 -27738247 + THE1C-int LTR MaLR 7 1578 -2 1752 166 32 29 chr21 17169325 17169699 -27737871 + THE1C LTR MaLR 1 375 0 917 183 131 33 chr21 17169719 17169870 -27737700 + L1MDa LINE L1 969 1104 -5436 4275 154 10 36 chr21 17169870 17170670 -27736900 - MER4E LTR ERV1 0 779 1 917 183 131 33 chr21 17170670 17170727 -27736843 + L1MDa LINE L1 1104 1154 -5386 2354 128 5 16 chr21 17170727 17171095 -27736475 - THE1B LTR MaLR 0 364 1 917 183 131 33 chr21 17171095 17171169 -27736401 + L1MDa LINE L1 1154 1219 -5321 2087 138 0 6 chr21 17171169 17171481 -27736089 + AluSg SINE Alu 1 310 0 917 183 131 33 chr21 17171481 17171502 -27736068 + L1MDa LINE L1 1219 1304 -5236 1307 227 25 91 chr21 17171507 17172101 -27735469 + L1MDa LINE L1 2872 3426 -3114 23 0 0 0 chr21 17172257 17172280 -27735290 + AT_rich Low_complexity Low_complexity 1 23 0 303 336 111 69 chr21 17173961 17174294 -27733276 - L2 LINE L2 -39 3233 2887 282 56 0 0 chr21 17174401 17174437 -27733133 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 318 177 9 chr21 17175141 17175361 -27732209 - L2 LINE L2 -675 2639 2383 251 351 78 38 chr21 17175491 17175912 -27731658 - L2 LINE L2 -1491 1823 1386 1657 238 46 15 chr21 17177064 17177425 -27730145 + MLT2D LTR ERVL 1 376 -38 768 52 0 0 chr21 17177425 17177522 -27730048 + (TA)n Simple_repeat Simple_repeat 1 97 0 1657 238 46 15 chr21 17177522 17177551 -27730019 + MLT2D LTR ERVL 376 403 -11 607 217 0 17 chr21 17177666 17177786 -27729784 + FRAM SINE Alu 37 154 -22 21 36 0 0 chr21 17177980 17178008 -27729562 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 17178435 17178457 -27729113 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 17179179 17179207 -27728363 + AT_rich Low_complexity Low_complexity 1 28 0 1124 108 0 0 chr21 17179357 17179514 -27728056 + AluSg/x SINE Alu 141 297 -15 1422 286 147 52 chr21 17180269 17181288 -27726282 + L2 LINE L2 1595 2710 -604 29 0 0 0 chr21 17181560 17181589 -27725981 + AT_rich Low_complexity Low_complexity 1 29 0 13852 181 38 15 chr21 17182184 17183554 -27724016 - L1PA13 LINE L1 -4 7597 6261 1659 176 27 29 chr21 17183554 17183928 -27723642 + THE1C LTR MaLR 3 375 0 13852 181 38 15 chr21 17183928 17184379 -27723191 - L1PA13 LINE L1 -1340 6261 5822 1856 143 9 40 chr21 17184379 17184701 -27722869 - AluSx SINE Alu 0 312 1 13852 181 38 15 chr21 17184701 17186787 -27720783 - L1PA13 LINE L1 -1779 5822 3606 216 0 0 0 chr21 17187272 17187296 -27720274 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2153 232 13 15 chr21 17187297 17187841 -27719729 - L1PA13 LINE L1 -3975 3609 3067 1859 157 0 27 chr21 17187842 17188136 -27719434 + AluSx SINE Alu 1 286 -26 442 209 0 0 chr21 17188190 17188276 -27719294 - L1PA13 LINE L1 -4510 3071 2986 26 0 0 0 chr21 17188276 17188302 -27719268 + AT_rich Low_complexity Low_complexity 1 26 0 42829 34 21 1 chr21 17188302 17194327 -27713243 - L1PA3 LINE L1 -3 6152 4 3344 143 12 0 chr21 17194330 17194891 -27712679 - L1PA13 LINE L1 -4581 3000 2433 5236 251 42 16 chr21 17194937 17195133 -27712437 - L1PA13 LINE L1 -6202 1379 1190 1926 174 120 5 chr21 17195133 17195517 -27712053 - MSTA LTR MaLR 0 428 1 5236 251 42 16 chr21 17195517 17196657 -27710913 - L1PA13 LINE L1 -6391 1190 8 21 0 0 0 chr21 17196877 17196898 -27710672 + AT_rich Low_complexity Low_complexity 1 21 0 1918 159 7 0 chr21 17197622 17197931 -27709639 + AluSx SINE Alu 1 311 -1 674 299 11 0 chr21 17198762 17198946 -27708624 - MER5A DNA MER1_type -2 187 2 17614 119 22 9 chr21 17199596 17202268 -27705302 - Charlie3 DNA MER1_type -4 2706 2 4519 105 27 1 chr21 17202396 17202749 -27704821 - L1PB1 LINE L1 -1 6150 5807 342 0 0 0 chr21 17202749 17202787 -27704783 + (TG)n Simple_repeat Simple_repeat 2 39 0 4519 105 27 1 chr21 17202787 17203109 -27704461 - L1PB1 LINE L1 -344 5807 5458 342 0 0 0 chr21 17203497 17203535 -27704035 + (TG)n Simple_repeat Simple_repeat 2 39 0 313 366 192 7 chr21 17205542 17205829 -27701741 - L2 LINE L2 -29 3284 2945 730 206 8 0 chr21 17205831 17205962 -27701608 + AluJb SINE Alu 1 132 -180 871 218 6 0 chr21 17205996 17206166 -27701404 + AluJb SINE Alu 122 292 -20 371 297 92 36 chr21 17206234 17206497 -27701073 - MLT1I LTR MaLR -8 442 120 24 53 0 0 chr21 17207377 17207415 -27700155 + AT_rich Low_complexity Low_complexity 1 38 0 373 291 0 16 chr21 17207649 17207776 -27699794 + (TA)n Simple_repeat Simple_repeat 1 125 0 1485 280 135 11 chr21 17207778 17208625 -27698945 + L1MC2 LINE L1 2681 3632 -2514 1286 198 112 35 chr21 17208627 17208966 -27698604 - MLT1A2 LTR MaLR 0 374 10 1971 237 40 20 chr21 17208972 17209580 -27697990 + L1MC2 LINE L1 3629 4248 -1898 2277 181 66 58 chr21 17209607 17210226 -27697344 + L1MC2 LINE L1 5706 6329 -15 192 77 0 0 chr21 17210253 17210279 -27697291 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr21 17210431 17210468 -27697102 + AT_rich Low_complexity Low_complexity 1 37 0 1106 275 128 67 chr21 17210642 17211836 -27695734 - HAL1 LINE L1 -246 2261 995 202 250 40 92 chr21 17212314 17212390 -27695180 - L2 LINE L2 0 3313 3242 1664 177 13 28 chr21 17214048 17214365 -27693205 + AluSx SINE Alu 1 312 0 189 147 0 0 chr21 17214673 17214707 -27692863 + (GA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr21 17215504 17215535 -27692035 + AT_rich Low_complexity Low_complexity 1 31 0 3699 111 19 7 chr21 17215822 17216406 -27691164 - L1PA13 LINE L1 -5 6158 5568 537 316 20 17 chr21 17216416 17216717 -27690853 - L1ME LINE L1 -4574 1687 1386 1748 270 87 49 chr21 17216747 17217945 -27689625 - L1ME LINE L1 -4831 1249 6 203 253 0 53 chr21 17218855 17218950 -27688620 + (CAAA)n Simple_repeat Simple_repeat 3 92 0 298 285 66 20 chr21 17219035 17219186 -27688384 + L1MC4a LINE L1 5308 5465 -2343 422 282 107 53 chr21 17219324 17219760 -27687810 + MER20B DNA MER1_type 180 650 -133 1519 173 35 28 chr21 17219760 17220049 -27687521 - AluJb SINE Alu -21 291 1 422 282 107 53 chr21 17220049 17220137 -27687433 + MER20B DNA MER1_type 650 732 -51 827 299 70 39 chr21 17220229 17220744 -27686826 + L1MC4a LINE L1 5474 6004 -1804 30 27 0 0 chr21 17222545 17222582 -27684988 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr21 17223216 17223262 -27684308 + AT_rich Low_complexity Low_complexity 1 46 0 247 269 22 22 chr21 17223429 17223563 -27684007 - L1ME3A LINE L1 -233 5937 5804 342 365 65 36 chr21 17224223 17224530 -27683040 - L1ME3A LINE L1 -2228 5580 5265 864 233 50 84 chr21 17224600 17224957 -27682613 - MER2 DNA MER2_type 0 345 1 237 302 58 19 chr21 17224983 17225188 -27682382 - L1ME3A LINE L1 -974 5172 4960 927 195 43 17 chr21 17226357 17226588 -27680982 + L1MB3 LINE L1 5945 6181 -2 2046 105 0 4 chr21 17226668 17226944 -27680626 + AluSg SINE Alu 1 275 -35 270 0 0 0 chr21 17226944 17226974 -27680596 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1571 162 99 24 chr21 17228290 17228623 -27678947 + THE1B LTR MaLR 1 358 -6 670 131 10 0 chr21 17229074 17229173 -27678397 + MSTA LTR MaLR 1 100 -328 1069 62 8 0 chr21 17229174 17229304 -27678266 + AluY SINE Alu 130 260 -51 18987 168 26 18 chr21 17229305 17232734 -27674836 - L1M1 LINE L1 -4098 3467 10 777 229 64 117 chr21 17232773 17233148 -27674422 - MER57A LTR ERV1 -3 400 46 252 207 35 35 chr21 17234041 17234128 -27673442 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 2181 216 51 2 chr21 17235784 17236233 -27671337 - LTR42 LTR ERVL -24 471 1 289 296 19 82 chr21 17236403 17236562 -27671008 + MIR SINE MIR 88 236 -26 4713 164 39 24 chr21 17236617 17237527 -27670043 + MER49 LTR ERV1 1 923 0 472 286 66 19 chr21 17237839 17238052 -27669518 + MIR SINE MIR 40 262 0 1652 162 133 3 chr21 17239093 17239438 -27668132 - MLT1B LTR MaLR 0 390 1 945 226 51 72 chr21 17239492 17239824 -27667746 - MLT1D LTR MaLR -180 325 1 223 174 0 0 chr21 17241352 17241398 -27666172 + (TA)n Simple_repeat Simple_repeat 2 47 0 383 333 66 51 chr21 17241508 17241919 -27665651 - MERVL LTR ERVL -1075 4410 3994 862 179 67 98 chr21 17242441 17242726 -27664844 + L1MB8 LINE L1 5902 6177 -1 466 296 15 7 chr21 17244359 17244494 -27663076 + LTR16B LTR ERVL 185 320 -144 474 178 0 0 chr21 17245039 17245129 -27662441 + CT-rich Low_complexity Low_complexity 4 93 0 180 0 0 0 chr21 17245580 17245600 -27661970 + (TG)n Simple_repeat Simple_repeat 2 21 0 2400 58 0 0 chr21 17245644 17245939 -27661631 + AluY SINE Alu 1 295 -16 222 191 0 0 chr21 17247146 17247193 -27660377 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr21 17248689 17248711 -27658859 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr21 17249099 17249135 -27658435 + AT_rich Low_complexity Low_complexity 1 36 0 48 32 0 0 chr21 17249194 17249256 -27658314 + AT_rich Low_complexity Low_complexity 1 62 0 307 373 163 20 chr21 17249256 17249508 -27658062 - L2 LINE L2 -6 3266 2979 461 376 61 4 chr21 17249704 17249951 -27657619 + MLT1J1 LTR MaLR 54 314 -132 631 299 16 0 chr21 17249952 17250136 -27657434 - MER5A DNA MER1_type -1 188 2 209 210 16 0 chr21 17250717 17250779 -27656791 + (TA)n Simple_repeat Simple_repeat 2 64 0 2129 93 7 3 chr21 17250813 17251103 -27656467 + AluSc SINE Alu 1 291 -18 293 332 49 5 chr21 17252108 17252313 -27655257 - Charlie8 DNA MER1_type -1899 518 305 344 345 149 27 chr21 17252828 17253237 -27654333 + L2 LINE L2 1799 2257 -1057 211 327 39 39 chr21 17253888 17253992 -27653578 + L2 LINE L2 3133 3236 -36 21 0 0 0 chr21 17254608 17254629 -27652941 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 17255502 17255535 -27652035 + AT_rich Low_complexity Low_complexity 1 33 0 205 73 24 49 chr21 17255650 17255691 -27651879 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 25 0 0 0 chr21 17256421 17256446 -27651124 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr21 17256544 17256570 -27651000 + AT_rich Low_complexity Low_complexity 1 26 0 203 133 0 0 chr21 17256710 17256740 -27650830 + (TG)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr21 17258027 17258098 -27649472 + AT_rich Low_complexity Low_complexity 1 71 0 2074 231 32 10 chr21 17259782 17259870 -27647700 - MLT1D LTR MaLR 0 505 420 3413 140 4 4 chr21 17259870 17260397 -27647173 + MER1A DNA MER1_type 1 527 0 2074 231 32 10 chr21 17260397 17260802 -27646768 - MLT1D LTR MaLR -85 420 1 399 353 25 21 chr21 17261105 17261346 -27646224 + MLT1J LTR MaLR 6 247 -264 247 269 28 37 chr21 17261434 17261542 -27646028 + MLT1J LTR MaLR 401 507 -4 312 27 0 0 chr21 17262583 17262620 -27644950 + (CA)n Simple_repeat Simple_repeat 1 37 0 31 0 0 0 chr21 17262790 17262821 -27644749 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr21 17263079 17263115 -27644455 + AT_rich Low_complexity Low_complexity 1 36 0 393 22 0 0 chr21 17264041 17264087 -27643483 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr21 17264915 17264938 -27642632 + AT_rich Low_complexity Low_complexity 1 23 0 880 95 6 7 chr21 17265026 17265176 -27642394 - L1PA8A LINE L1 -406 5725 5590 237 234 128 21 chr21 17265341 17265435 -27642135 - MIR SINE MIR -93 169 66 3546 160 18 37 chr21 17265444 17266168 -27641402 + MER50 LTR ERV1 1 710 -24 23 54 0 0 chr21 17266340 17266377 -27641193 + AT_rich Low_complexity Low_complexity 1 37 0 1020 157 124 23 chr21 17266724 17266941 -27640629 - AluJo SINE Alu -59 253 15 2079 230 99 11 chr21 17267595 17268222 -27639348 - L1MB8 LINE L1 0 6178 5608 2161 188 44 69 chr21 17268222 17268790 -27638780 + MLT2B3 LTR ERVL 1 554 0 2079 230 99 11 chr21 17268790 17269246 -27638324 - L1MB8 LINE L1 -570 5608 4979 22 0 0 0 chr21 17269294 17269316 -27638254 + AT_rich Low_complexity Low_complexity 1 22 0 973 290 37 70 chr21 17269698 17270097 -27637473 - L1M4b LINE L1 -5635 1224 596 1197 201 15 114 chr21 17270106 17270499 -27637071 + MLT1A1 LTR MaLR 7 360 -5 906 285 72 55 chr21 17270534 17271022 -27636548 - L1M4b LINE L1 -6353 506 11 769 296 140 39 chr21 17272603 17273090 -27634480 - MLT1H LTR MaLR -2 547 12 269 200 28 21 chr21 17273536 17273681 -27633889 + (TA)n Simple_repeat Simple_repeat 2 147 0 28 29 0 0 chr21 17273905 17273940 -27633630 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 17274001 17274030 -27633540 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr21 17274120 17274143 -27633427 + (TA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr21 17274155 17274183 -27633387 + AT_rich Low_complexity Low_complexity 1 28 0 45 83 0 0 chr21 17275190 17275298 -27632272 + AT_rich Low_complexity Low_complexity 1 108 0 4376 143 61 18 chr21 17275298 17276133 -27631437 - L1MA5 LINE L1 -15 6285 5415 3428 187 24 30 chr21 17276133 17276934 -27630636 + L1MA5 LINE L1 4608 5403 -743 269 378 61 5 chr21 17277133 17277329 -27630241 + MIR SINE MIR 49 255 -7 186 43 0 0 chr21 17279088 17279111 -27628459 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr21 17279342 17279363 -27628207 + AT_rich Low_complexity Low_complexity 1 21 0 198 323 16 0 chr21 17279467 17279529 -27628041 - MIR SINE MIR -79 129 67 322 285 112 43 chr21 17279948 17280357 -27627213 + LTR33A LTR ERVL 15 475 -48 21 36 0 0 chr21 17280717 17280745 -27626825 + AT_rich Low_complexity Low_complexity 1 28 0 743 163 0 31 chr21 17281628 17281757 -27625813 - AluJb SINE Alu -187 125 1 226 278 0 42 chr21 17282245 17282317 -27625253 + G-rich Low_complexity Low_complexity 5 73 0 458 200 113 0 chr21 17282829 17282900 -27624670 + L1MA9 LINE L1 6079 6141 -171 360 0 0 0 chr21 17282900 17282940 -27624630 + (CA)n Simple_repeat Simple_repeat 1 40 0 458 200 113 0 chr21 17282940 17282983 -27624587 + L1MA9 LINE L1 6141 6206 -106 1967 186 36 31 chr21 17282986 17283534 -27624036 - MLT2A2 LTR ERVL 0 554 1 454 133 102 0 chr21 17283534 17283632 -27623938 + L1MA9 LINE L1 6205 6312 0 2242 83 0 0 chr21 17284746 17285034 -27622536 - AluSg SINE Alu -22 288 1 1670 76 0 9 chr21 17285709 17285933 -27621637 + AluY SINE Alu 76 297 -14 254 109 47 47 chr21 17286936 17287000 -27620570 + T-rich Low_complexity Low_complexity 2 65 0 35 54 0 0 chr21 17287901 17287957 -27619613 + AT_rich Low_complexity Low_complexity 1 56 0 2321 82 0 3 chr21 17288303 17288607 -27618963 + AluY SINE Alu 1 303 -8 1100 204 19 23 chr21 17290115 17290379 -27617191 + L1MA8 LINE L1 5982 6244 -47 5251 210 22 54 chr21 17290397 17291923 -27615647 + L1PA11 LINE L1 886 2361 -3785 8005 157 37 18 chr21 17291923 17294152 -27613418 + L1PA11 LINE L1 3877 6171 -3 359 292 84 32 chr21 17294467 17294621 -27612949 + MLT1J LTR MaLR 1 162 -349 333 284 144 42 chr21 17294655 17294870 -27612700 + MLT1J LTR MaLR 231 467 -44 189 308 77 15 chr21 17294905 17295035 -27612535 - L2 LINE L2 -1265 2049 1912 1707 144 40 7 chr21 17295426 17295704 -27611866 + AluJo SINE Alu 1 287 -25 29 47 0 0 chr21 17295867 17295910 -27611660 + AT_rich Low_complexity Low_complexity 1 43 0 271 327 0 48 chr21 17298576 17298680 -27608890 + MLT1J2 LTR MaLR 30 128 -322 2209 112 3 0 chr21 17299039 17299333 -27608237 + AluSc SINE Alu 1 295 -14 21 0 0 0 chr21 17299446 17299467 -27608103 + AT_rich Low_complexity Low_complexity 1 21 0 1079 226 104 27 chr21 17299733 17300136 -27607434 + HsTC2 DNA Tc2 1288 1897 -1 21 0 0 0 chr21 17300172 17300193 -27607377 + AT_rich Low_complexity Low_complexity 1 21 0 573 332 102 16 chr21 17300829 17301202 -27606368 + MLT1J2 LTR MaLR 1 405 -45 258 294 0 0 chr21 17301340 17301408 -27606162 + L1MC/D LINE L1 5304 5371 -2414 543 271 21 7 chr21 17301410 17301554 -27606016 + MLT1A1 LTR MaLR 3 148 -217 463 230 111 0 chr21 17301558 17301684 -27605886 + L1MC/D LINE L1 5493 5632 -727 1587 140 3 79 chr21 17301728 17302093 -27605477 - MER4A LTR ERV1 0 664 261 699 101 0 10 chr21 17302093 17302192 -27605378 - MER4A LTR ERV1 -566 98 1 1428 196 55 166 chr21 17302199 17302888 -27604682 + LTR8A LTR ERV1 71 683 -44 5939 214 47 47 chr21 17302888 17304302 -27603268 - MER65C-int LTR ERV1 -722 3469 2055 889 288 100 15 chr21 17304338 17304792 -27602778 - MER101B LTR ERV1 -32 512 24 2057 223 3 10 chr21 17304829 17305215 -27602355 - MER65C-int LTR ERV1 -2148 2043 1661 1458 192 99 153 chr21 17305215 17306140 -27601430 + LTR28 LTR ERV1 1 1016 -4 1985 187 61 25 chr21 17306244 17306640 -27600930 - MER65C-int LTR ERV1 -2527 1664 1255 2613 38 0 6 chr21 17306641 17306954 -27600616 + AluY SINE Alu 1 311 0 1957 57 209 0 chr21 17307152 17307449 -27600121 - L1PA8 LINE L1 0 6172 5814 2861 243 21 27 chr21 17307449 17308162 -27599408 - MER65C-int LTR ERV1 -2531 4227 3519 2372 216 31 4 chr21 17308688 17309175 -27598395 - MER65C-int LTR ERV1 -3691 500 1 197 119 24 0 chr21 17310135 17310177 -27597393 + A-rich Low_complexity Low_complexity 1 43 0 208 141 14 42 chr21 17310210 17310281 -27597289 + (TTAAA)n Simple_repeat Simple_repeat 1 69 0 33 73 0 0 chr21 17310290 17310358 -27597212 + AT_rich Low_complexity Low_complexity 1 68 0 258 328 37 62 chr21 17310710 17310799 -27596771 + L2 LINE L2 2935 3025 -288 2023 114 3 10 chr21 17310799 17311107 -27596463 - AluSx SINE Alu -6 306 1 258 328 37 62 chr21 17311107 17311340 -27596230 + L2 LINE L2 3025 3249 -64 1641 176 3 7 chr21 17311416 17311712 -27595858 - MER65C LTR ERV1 -1 460 166 32 0 0 0 chr21 17311777 17311809 -27595761 + AT_rich Low_complexity Low_complexity 1 32 0 264 321 37 45 chr21 17311991 17312125 -27595445 + MIR SINE MIR 45 177 -85 1535 213 6 13 chr21 17312348 17312662 -27594908 + AluJb SINE Alu 1 312 0 308 186 0 14 chr21 17312665 17312735 -27594835 + GA-rich Low_complexity Low_complexity 3 71 0 1498 120 5 5 chr21 17312782 17313036 -27594534 - AluSq SINE Alu 0 319 66 2180 200 50 2 chr21 17313268 17313708 -27593862 - LOR1b LTR ERV1 0 461 1 24 67 0 0 chr21 17314315 17314360 -27593210 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 17314423 17314469 -27593101 + AT_rich Low_complexity Low_complexity 1 46 0 228 257 29 0 chr21 17314536 17314606 -27592964 + L1MC4 LINE L1 6625 6696 -1346 24 0 0 0 chr21 17315032 17315056 -27592514 + AT_rich Low_complexity Low_complexity 1 24 0 1876 205 70 0 chr21 17315645 17316015 -27591555 + MSTD LTR MaLR 1 396 0 749 280 10 0 chr21 17316369 17316576 -27590994 - MER6B DNA MER2_type -1 209 1 833 194 0 7 chr21 17316877 17317032 -27590538 + MLT1A1 LTR MaLR 1 154 -211 462 217 26 43 chr21 17317035 17317150 -27590420 + FLAM_A SINE Alu 3 115 -27 210 118 0 0 chr21 17317152 17317186 -27590384 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 614 234 33 77 chr21 17317187 17317355 -27590215 + MLT1A1 LTR MaLR 149 344 -52 210 143 0 0 chr21 17317481 17317516 -27590054 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr21 17317751 17317789 -27589781 + AT_rich Low_complexity Low_complexity 1 38 0 180 349 75 41 chr21 17318351 17318497 -27589073 - MIR3 SINE MIR -41 167 17 28 48 0 0 chr21 17319571 17319613 -27587957 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr21 17320919 17320945 -27586625 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 21 0 0 0 chr21 17321534 17321555 -27586015 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 17321839 17321862 -27585708 + AT_rich Low_complexity Low_complexity 1 23 0 488 220 20 0 chr21 17321863 17321963 -27585607 - FLAM_A SINE Alu -21 121 20 1796 258 29 35 chr21 17322208 17322692 -27584878 + MLT1E3 LTR MaLR 144 624 0 1137 153 18 9 chr21 17323366 17323595 -27583975 - L1PA13 LINE L1 0 6163 5933 22 0 0 0 chr21 17324113 17324135 -27583435 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr21 17324654 17324699 -27582871 + (CA)n Simple_repeat Simple_repeat 2 46 0 7834 180 53 17 chr21 17324714 17326740 -27580830 + L1MC1 LINE L1 22 2204 -4222 1239 230 121 0 chr21 17326735 17327091 -27580479 + L1MC1 LINE L1 4690 5088 -1338 * 5249 13 0 0 chr21 17327091 17327689 -27579881 + L1HS LINE L1 5556 6153 -2 186 71 0 0 chr21 17327690 17327718 -27579852 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 5125 195 43 17 chr21 17327721 17329212 -27578358 + L1MC1 LINE L1 5087 6612 -1 635 242 59 59 chr21 17329256 17329475 -27578095 + MER20 DNA MER1_type 1 219 0 187 31 62 0 chr21 17330505 17330537 -27577033 + A-rich Low_complexity Low_complexity 2 35 0 619 180 62 45 chr21 17331125 17331139 -27576431 + MER53 DNA DNA 9 21 -168 2052 129 20 3 chr21 17331139 17331442 -27576128 + AluSx SINE Alu 1 308 -4 619 180 62 45 chr21 17331442 17331605 -27575965 + MER53 DNA DNA 21 189 0 355 249 10 137 chr21 17333214 17333419 -27574151 + MER104 DNA Tc2 1 179 -1 36 23 0 0 chr21 17334275 17334318 -27573252 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr21 17335278 17335323 -27572247 + AT_rich Low_complexity Low_complexity 1 45 0 252 91 0 0 chr21 17335658 17335691 -27571879 - MLT1I LTR MaLR -269 140 108 698 243 87 25 chr21 17335776 17336142 -27571428 - L1M4 LINE L1 -1486 4660 4272 188 259 141 24 chr21 17337694 17337779 -27569791 - L2 LINE L2 -2 3311 3217 255 284 239 9 chr21 17338385 17338494 -27569076 + MER5A DNA MER1_type 47 180 -9 771 283 11 11 chr21 17338559 17338736 -27568834 + MER5A DNA MER1_type 13 189 0 255 321 12 95 chr21 17338751 17338919 -27568651 + MER5B DNA MER1_type 24 177 -1 1694 228 33 31 chr21 17339074 17339530 -27568040 + MSTB2 LTR MaLR 1 457 0 1208 81 6 0 chr21 17339686 17339860 -27567710 + (TCTCC)n Simple_repeat Simple_repeat 4 178 0 354 45 0 0 chr21 17339861 17339905 -27567665 + (TCCCC)n Simple_repeat Simple_repeat 4 47 0 189 0 0 0 chr21 17339905 17339926 -27567644 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2334 18 4 4 chr21 17339928 17340207 -27567363 - AluY SINE Alu -32 279 1 318 26 0 0 chr21 17340990 17341029 -27566541 + (TG)n Simple_repeat Simple_repeat 2 40 0 541 26 52 0 chr21 17341523 17341600 -27565970 + (TAAAA)n Simple_repeat Simple_repeat 2 82 0 696 189 30 80 chr21 17341939 17342140 -27565430 - L1MC/D LINE L1 -2042 5743 5553 * 1934 240 131 40 chr21 17342139 17342947 -27564623 + L1MD3 LINE L1 6233 7114 -881 316 300 0 0 chr21 17342950 17343040 -27564530 + MLT1F1 LTR MaLR 36 125 -442 847 218 18 0 chr21 17343059 17343224 -27564346 + L1MC3 LINE L1 7194 7361 -424 2252 97 0 3 chr21 17343237 17343537 -27564033 + AluSp SINE Alu 1 299 -14 22 0 0 0 chr21 17344127 17344149 -27563421 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr21 17344345 17344386 -27563184 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr21 17344413 17344464 -27563106 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr21 17344582 17344617 -27562953 + AT_rich Low_complexity Low_complexity 1 35 0 223 279 16 16 chr21 17344995 17345056 -27562514 + L2 LINE L2 3211 3271 -1 213 178 0 0 chr21 17347340 17347385 -27560185 + T-rich Low_complexity Low_complexity 1 45 0 327 376 103 22 chr21 17347574 17347981 -27559589 + L2 LINE L2 2492 2931 -383 24 32 0 0 chr21 17348946 17348977 -27558593 + AT_rich Low_complexity Low_complexity 1 31 0 227 137 0 20 chr21 17349569 17349620 -27557950 + L1MCa LINE L1 2005 2054 -4372 718 291 62 0 chr21 17349668 17349878 -27557692 + MIR SINE MIR 39 261 -1 431 240 10 10 chr21 17350358 17350462 -27557108 + MLT1J LTR MaLR 69 172 -339 584 304 173 18 chr21 17350774 17351103 -27556467 + L2 LINE L2 2925 3304 -9 193 411 50 7 chr21 17351190 17351331 -27556239 - L2 LINE L2 -427 2887 2741 1804 137 11 0 chr21 17351843 17352120 -27555450 + AluSq SINE Alu 17 296 -17 207 182 45 30 chr21 17352147 17352213 -27555357 + A-rich Low_complexity Low_complexity 2 68 0 266 250 46 37 chr21 17352620 17352728 -27554842 + MIR SINE MIR 153 261 -1 317 298 177 19 chr21 17353001 17353216 -27554354 - L3 LINE CR1 -428 1149 901 456 233 75 44 chr21 17353790 17353860 -27553710 + MIR SINE MIR 99 165 -97 2019 134 0 16 chr21 17353860 17354167 -27553403 - AluSc SINE Alu -7 302 1 456 233 75 44 chr21 17354167 17354255 -27553315 + MIR SINE MIR 165 262 0 21 0 0 0 chr21 17354255 17354276 -27553294 + AT_rich Low_complexity Low_complexity 1 21 0 2041 121 13 7 chr21 17354969 17355275 -27552295 - AluSg SINE Alu 0 310 3 2524 68 0 0 chr21 17355617 17355928 -27551642 - AluY SINE Alu 0 311 1 623 279 164 14 chr21 17356252 17356600 -27550970 + LTR16A1 LTR ERVL 55 454 -3 21 95 0 0 chr21 17356895 17356958 -27550612 + AT_rich Low_complexity Low_complexity 1 63 0 2986 82 13 22 chr21 17357231 17357682 -27549888 - L1PA13 LINE L1 -5 6158 5712 23 33 0 0 chr21 17357922 17357952 -27549618 + AT_rich Low_complexity Low_complexity 1 30 0 1875 148 3 14 chr21 17357961 17358252 -27549318 - AluSg SINE Alu -20 290 3 185 365 16 0 chr21 17358324 17358387 -27549183 + MIR SINE MIR 83 146 -62 453 261 33 118 chr21 17358387 17358659 -27548911 + HAL1 LINE L1 1 249 -2258 * 6179 131 3 4 chr21 17358654 17359588 -27547982 - THE1B-int LTR MaLR -647 933 1 1753 128 119 33 chr21 17359588 17359923 -27547647 - THE1B LTR MaLR 0 364 1 944 258 87 92 chr21 17361477 17361997 -27545573 - MLT1H LTR MaLR -8 541 25 399 41 0 0 chr21 17362291 17362340 -27545230 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 342 25 0 chr21 17362784 17362863 -27544707 - L2 LINE L2 -797 2517 2437 1832 108 4 0 chr21 17363142 17363391 -27544179 - AluSg SINE Alu -19 291 42 283 307 67 33 chr21 17365305 17365455 -27542115 + L2 LINE L2 3159 3313 0 1852 152 52 38 chr21 17365915 17366283 -27541287 - THE1C LTR MaLR -2 373 1 1948 291 83 26 chr21 17366289 17367233 -27540337 - L2 LINE L2 0 3313 2299 224 309 124 50 chr21 17367564 17367765 -27539805 - L2 LINE L2 0 3313 3098 1445 205 39 28 chr21 17368036 17368402 -27539168 + MLT1A2 LTR MaLR 1 396 0 656 167 14 22 chr21 17368404 17368542 -27539028 + MLT1A2-int LTR MaLR 2 138 -1597 1014 243 40 40 chr21 17368549 17368853 -27538717 - MER67B LTR ERV1 -357 304 1 1162 291 92 30 chr21 17368861 17369640 -27537930 - L1M4 LINE L1 -1577 4569 3742 477 95 0 12 chr21 17369643 17369727 -27537843 - Alu SINE Alu -2 310 228 564 246 16 8 chr21 17369794 17369920 -27537650 + MLT2B1 LTR ERVL 345 471 -49 210 200 20 0 chr21 17369957 17370007 -27537563 + (TA)n Simple_repeat Simple_repeat 2 52 0 203 122 54 40 chr21 17370190 17370264 -27537306 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 948 203 14 14 chr21 17370355 17370567 -27537003 - L1MA9 LINE L1 -42 6270 6059 2773 205 55 24 chr21 17370569 17371551 -27536019 - L1MA9 LINE L1 -620 5692 4698 527 177 18 26 chr21 17371558 17371671 -27535899 + LTR52-int LTR ERVL 1166 1277 -4408 * 584 202 4 2 chr21 17371669 17371808 -27535762 + LTR52-int LTR ERVL 1925 2060 -1496 401 154 96 48 chr21 17371923 17372027 -27535543 + LTR52-int LTR ERVL 1088 1196 -2360 410 239 11 11 chr21 17372034 17372126 -27535444 + LTR52 LTR ERVL 309 400 -21 529 410 62 18 chr21 17372144 17372642 -27534928 - L1MEc LINE L1 -5613 783 264 247 171 24 0 chr21 17372654 17372695 -27534875 + 5S rRNA rRNA 1 42 -79 213 132 0 0 chr21 17373251 17373289 -27534281 + (CA)n Simple_repeat Simple_repeat 2 39 0 9703 163 21 30 chr21 17373810 17375278 -27532292 + Tigger1 DNA MER2_type 1 1453 -965 2522 104 13 11 chr21 17375278 17375654 -27531916 - L1PA13 LINE L1 -4 6159 5783 9703 163 21 30 chr21 17375654 17375948 -27531622 + Tigger1 DNA MER2_type 1453 1748 -670 1397 177 44 4 chr21 17375952 17376200 -27531370 + AluSx SINE Alu 6 263 -49 313 305 55 40 chr21 17376728 17376928 -27530642 + L2 LINE L2 3109 3311 -2 257 333 49 12 chr21 17378091 17378253 -27529317 - LTR67 LTR ERVL -4 553 386 693 167 16 8 chr21 17378323 17378449 -27529121 + FLAM_C SINE Alu 1 127 -16 239 273 182 42 chr21 17378512 17378655 -27528915 - LTR67 LTR ERVL -355 202 40 710 160 0 16 chr21 17379821 17379946 -27527624 - FLAM_C SINE Alu -20 123 1 33 25 0 0 chr21 17380041 17380081 -27527489 + AT_rich Low_complexity Low_complexity 1 40 0 2143 125 10 13 chr21 17380284 17380638 -27526932 - AluSx SINE Alu 0 355 3 929 248 60 10 chr21 17381012 17381465 -27526105 + MER34 LTR ERV1 14 517 -25 1955 172 77 0 chr21 17381521 17381887 -27525683 + MER57A LTR ERV1 8 401 -2 771 318 57 41 chr21 17382067 17382508 -27525062 - LTR68 LTR ERV1 -290 450 3 21 0 0 0 chr21 17382674 17382695 -27524875 + AT_rich Low_complexity Low_complexity 1 21 0 3389 208 135 57 chr21 17382876 17383918 -27523652 + LTR28 LTR ERV1 1 1750 -5 718 175 51 45 chr21 17384625 17384802 -27522768 - L1MD1 LINE L1 0 6242 6065 291 236 100 52 chr21 17384834 17385063 -27522507 - L1M4 LINE L1 -3028 3118 2879 1360 272 20 20 chr21 17385063 17385456 -27522114 - L1MDa LINE L1 -6030 510 118 41 58 0 0 chr21 17385463 17385532 -27522038 + AT_rich Low_complexity Low_complexity 1 69 0 323 279 0 0 chr21 17385573 17385641 -27521929 - L1MDa LINE L1 -6447 93 26 24 67 0 0 chr21 17385933 17385978 -27521592 + AT_rich Low_complexity Low_complexity 1 45 0 404 304 136 11 chr21 17387200 17387232 -27520338 + MIR SINE MIR 33 60 -202 279 71 0 0 chr21 17387232 17387274 -27520296 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 404 304 136 11 chr21 17387274 17387425 -27520145 + MIR SINE MIR 60 239 -23 3228 138 25 27 chr21 17387451 17388234 -27519336 + L1P5 LINE L1 4992 5775 -376 23 33 0 0 chr21 17388575 17388605 -27518965 + AT_rich Low_complexity Low_complexity 1 30 0 580 267 80 99 chr21 17388703 17389126 -27518444 - MLT1H LTR MaLR -3 546 132 1785 198 50 22 chr21 17389394 17389758 -27517812 + MSTA LTR MaLR 51 424 -4 2126 154 25 0 chr21 17389763 17390127 -27517443 + MSTA-int LTR MaLR 2 374 -1277 * 22337 26 1 0 chr21 17390126 17394344 -27513226 - L1PA2 LINE L1 0 6155 1934 6380 214 8 18 chr21 17394309 17395078 -27512492 + MSTA-int LTR MaLR 347 1121 -530 * 1731 162 32 51 chr21 17395078 17395449 -27512121 + THE1B LTR MaLR 1 364 0 11058 115 8 0 chr21 17395449 17397016 -27510554 + THE1B-int LTR MaLR 1 1580 0 1689 132 21 103 chr21 17397016 17397403 -27510167 + THE1A LTR MaLR 1 355 0 6380 214 8 18 chr21 17397403 17397609 -27509961 + MSTA-int LTR MaLR 1119 1325 -326 4261 141 16 12 chr21 17397609 17398297 -27509273 + LTR8 LTR ERV1 1 691 0 6380 214 8 18 chr21 17398297 17398635 -27508935 + MSTA-int LTR MaLR 1325 1651 0 405 242 0 10 chr21 17398637 17398736 -27508834 + MSTA LTR MaLR 3 100 -326 2426 147 24 24 chr21 17398736 17399152 -27508418 - MSTA LTR MaLR 0 428 13 985 83 0 0 chr21 17399206 17399339 -27508231 + L1MA1 LINE L1 6170 6302 0 1434 183 18 25 chr21 17399371 17399645 -27507925 + MSTA LTR MaLR 157 428 0 2149 106 0 3 chr21 17400307 17400613 -27506957 - AluSg SINE Alu 0 305 1 1704 151 89 31 chr21 17401146 17401471 -27506099 - THE1B LTR MaLR 0 364 21 965 339 54 14 chr21 17401471 17401899 -27505671 + L2 LINE L2 2371 2815 -499 491 330 24 29 chr21 17402061 17402267 -27505303 + L2 LINE L2 2873 3077 -236 271 330 75 29 chr21 17402362 17402535 -27505035 + LTR33A LTR ERVL 55 235 -288 519 114 0 0 chr21 17402577 17402656 -27504914 + AluSg/x SINE Alu 218 296 -16 1747 214 41 31 chr21 17402658 17403045 -27504525 - MSTB LTR MaLR -35 391 1 357 198 37 12 chr21 17403121 17403202 -27504368 + MLT1D LTR MaLR 48 130 -375 1137 189 8 29 chr21 17403203 17403408 -27504162 + MLT1D-int LTR MaLR 371 572 -799 1619 180 54 10 chr21 17403408 17403703 -27503867 - AluSx SINE Alu -4 308 1 1137 189 8 29 chr21 17403703 17403735 -27503835 + MLT1D-int LTR MaLR 572 603 -768 866 288 4 9 chr21 17403867 17404093 -27503477 + MLT1D-int LTR MaLR 659 883 -488 1084 287 59 51 chr21 17404177 17404668 -27502902 + MLT1D-int LTR MaLR 877 1371 0 1561 257 62 24 chr21 17404668 17405135 -27502435 + MLT1D LTR MaLR 1 485 -20 400 276 155 6 chr21 17405158 17405339 -27502231 + LTR33A LTR ERVL 287 494 -29 351 318 85 23 chr21 17405963 17406139 -27501431 - MIR SINE MIR -6 256 70 1322 212 80 13 chr21 17407293 17407637 -27499933 - MER47B DNA MER2_type -1 417 7 1793 184 37 6 chr21 17407854 17408208 -27499362 + MLT2C1 LTR ERVL 1 480 -40 3693 233 34 16 chr21 17408270 17408927 -27498643 + MLT1C-int LTR MaLR 1 680 -691 2269 205 29 0 chr21 17408927 17409371 -27498199 + MSTB2 LTR MaLR 1 457 0 3693 233 34 16 chr21 17409371 17409594 -27497976 + MLT1C-int LTR MaLR 680 897 -474 309 148 16 0 chr21 17409650 17409711 -27497859 + MLT1C-int LTR MaLR 1293 1354 -17 1624 231 111 2 chr21 17409755 17410161 -27497409 + MLT1C LTR MaLR 16 465 -2 21 0 0 0 chr21 17410345 17410366 -27497204 + AT_rich Low_complexity Low_complexity 1 21 0 1251 293 92 73 chr21 17411525 17411860 -27495710 - L2 LINE L2 -689 2625 2298 2176 125 0 0 chr21 17411860 17412157 -27495413 - AluSx SINE Alu -13 299 3 1251 293 92 73 chr21 17412157 17412225 -27495345 - L2 LINE L2 -1016 2298 2233 656 216 210 0 chr21 17412225 17412406 -27495164 - MER20 DNA MER1_type 0 219 1 1251 293 92 73 chr21 17412406 17412482 -27495088 - L2 LINE L2 -1081 2233 2160 2051 129 6 10 chr21 17412482 17412793 -27494777 + AluSx SINE Alu 1 310 -2 1251 293 92 73 chr21 17412793 17413065 -27494505 - L2 LINE L2 -1154 2160 1858 291 251 121 51 chr21 17413292 17413623 -27493947 + L1MC5 LINE L1 7311 7664 -297 1207 216 57 90 chr21 17413686 17414108 -27493462 + LTR52 LTR ERVL 12 419 -2 309 151 0 0 chr21 17414181 17414234 -27493336 + GA-rich Low_complexity Low_complexity 3 55 0 1940 133 123 0 chr21 17415073 17415397 -27492173 + THE1B LTR MaLR 1 364 0 2001 141 3 0 chr21 17415422 17415719 -27491851 + AluSx SINE Alu 1 298 -14 199 400 67 0 chr21 17416195 17416390 -27491180 - L2 LINE L2 -2861 453 246 24 32 0 0 chr21 17416965 17416996 -27490574 + AT_rich Low_complexity Low_complexity 1 31 0 1695 238 30 8 chr21 17417032 17417432 -27490138 - MLT2D LTR ERVL 0 414 6 206 357 21 36 chr21 17417656 17417796 -27489774 - MIR SINE MIR -122 140 3 23 0 0 0 chr21 17418309 17418332 -27489238 + AT_rich Low_complexity Low_complexity 1 23 0 1959 114 0 7 chr21 17418996 17419276 -27488294 - AluSg SINE Alu -2 308 31 21 36 0 0 chr21 17419975 17420003 -27487567 + AT_rich Low_complexity Low_complexity 1 28 0 1220 160 52 3 chr21 17421319 17421628 -27485942 + MSTA LTR MaLR 1 428 0 3535 194 35 50 chr21 17421730 17422699 -27484871 + LTR5 LTR ERVK 1 955 -14 1033 148 144 4 chr21 17422806 17423056 -27484514 - L1MA7 LINE L1 0 6291 6007 2639 170 37 37 chr21 17423199 17423424 -27484146 - L1MA7 LINE L1 -280 6011 5787 1260 267 67 11 chr21 17423424 17423799 -27483771 + MSTD LTR MaLR 1 396 0 2639 170 37 37 chr21 17423799 17424138 -27483432 - L1MA7 LINE L1 -503 5788 5447 30 27 0 0 chr21 17424571 17424608 -27482962 + AT_rich Low_complexity Low_complexity 1 37 0 4126 33 0 0 chr21 17424782 17425352 -27482218 - L1PA5 LINE L1 -691 5463 4894 5552 43 32 0 chr21 17425352 17426031 -27481539 + L1PA5 LINE L1 5450 6152 -2 23 33 0 0 chr21 17426032 17426062 -27481508 + AT_rich Low_complexity Low_complexity 1 30 0 250 397 63 0 chr21 17426120 17426294 -27481276 - MLT1J2 LTR MaLR -3 447 263 39 22 0 0 chr21 17426521 17426567 -27481003 + AT_rich Low_complexity Low_complexity 1 46 0 515 318 67 14 chr21 17426885 17427261 -27480309 + LTR16A LTR ERVL 34 448 -2 516 351 34 8 chr21 17427500 17427768 -27479802 + HERV16 LTR ERVL 261 535 -4461 467 16 0 16 chr21 17428056 17428117 -27479453 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1216 359 42 18 chr21 17428133 17428760 -27478810 + HERV16 LTR ERVL 930 1571 -3425 * 1395 302 81 39 chr21 17428751 17429466 -27478104 + HERV16 LTR ERVL 1698 2442 -2554 589 266 83 31 chr21 17429725 17429917 -27477653 + MER20 DNA MER1_type 18 219 0 1982 143 10 0 chr21 17429933 17430226 -27477344 - AluSx SINE Alu -16 296 1 702 307 42 0 chr21 17430299 17430511 -27477059 + LTR16A LTR ERVL 230 450 0 258 375 0 0 chr21 17430523 17430627 -27476943 + MIR SINE MIR 53 156 -106 31 88 0 0 chr21 17431325 17431405 -27476165 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr21 17431513 17431534 -27476036 + AT_rich Low_complexity Low_complexity 1 21 0 338 382 27 27 chr21 17432040 17432265 -27475305 - MIR SINE MIR -17 245 21 24 53 0 0 chr21 17433165 17433203 -27474367 + AT_rich Low_complexity Low_complexity 1 38 0 5377 215 73 26 chr21 17433777 17434182 -27473388 - L1MB3 LINE L1 -2 6181 5796 213 39 0 0 chr21 17434182 17434208 -27473362 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 5377 215 73 26 chr21 17434208 17436214 -27471356 - L1MB3 LINE L1 -387 5796 3648 426 237 3 0 chr21 17436260 17436370 -27471200 - L1MCa LINE L1 -3950 2614 2517 * 2641 262 53 32 chr21 17436364 17436486 -27471084 - L1MCa LINE L1 -4948 1097 979 1828 157 29 32 chr21 17436486 17436862 -27470708 - THE1C LTR MaLR 0 375 1 2641 262 53 32 chr21 17436862 17437580 -27469990 - L1MCa LINE L1 -5066 979 236 3665 122 71 2 chr21 17437580 17438170 -27469400 + MER41B LTR ERV1 1 631 -4 2641 262 53 32 chr21 17438170 17438201 -27469369 - L1MCa LINE L1 -5809 236 207 2690 176 35 76 chr21 17438289 17439010 -27468560 - LTR8 LTR ERV1 0 691 1 431 228 83 67 chr21 17439443 17439623 -27467947 - L1MCa LINE L1 -5855 190 8 2761 3 3 0 chr21 17439636 17439935 -27467635 + AluYa5 SINE Alu 1 300 -11 25 31 0 0 chr21 17440437 17440469 -27467101 + AT_rich Low_complexity Low_complexity 1 32 0 181 279 33 0 chr21 17440661 17440722 -27466848 - MIR SINE MIR -63 145 83 1170 148 35 0 chr21 17441747 17441950 -27465620 - Tigger7 DNA MER2_type 0 2487 2278 2262 190 9 46 chr21 17441953 17442406 -27465164 - Tigger7 DNA MER2_type -2048 439 4 23 54 0 0 chr21 17442494 17442531 -27465039 + AT_rich Low_complexity Low_complexity 1 37 0 1323 277 56 45 chr21 17442862 17443648 -27463922 - HAL1b LINE L1 -429 919 125 279 355 34 6 chr21 17444566 17444781 -27462789 + L1ME3 LINE L1 5336 5554 -612 232 294 43 22 chr21 17444897 17444989 -27462581 + MLT1J2 LTR MaLR 51 144 -306 1269 215 94 30 chr21 17444990 17445353 -27462217 - MLT1B LTR MaLR 0 390 5 225 94 0 0 chr21 17445435 17445467 -27462103 + (CA)n Simple_repeat Simple_repeat 1 32 0 403 314 51 6 chr21 17445698 17445711 -27461859 + L1ME3 LINE L1 5678 5689 -481 2122 102 24 0 chr21 17445711 17446005 -27461565 + AluSg SINE Alu 1 301 -9 403 314 51 6 chr21 17446005 17446250 -27461320 + L1ME3 LINE L1 5689 5948 -222 25 83 0 0 chr21 17446469 17446529 -27461041 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr21 17446610 17446631 -27460939 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 0 10 chr21 17446688 17446993 -27460577 + AluY SINE Alu 1 302 -9 250 301 179 0 chr21 17448251 17448374 -27459196 + MIR SINE MIR 118 262 0 887 234 184 29 chr21 17448503 17448991 -27458579 + LTR28 LTR ERV1 1 1232 -447 1648 177 31 26 chr21 17450176 17450526 -27457044 - L1MA4 LINE L1 -14 6286 5935 428 164 0 0 chr21 17450531 17450604 -27456966 + L1MA4 LINE L1 5868 5940 -360 245 329 22 7 chr21 17450856 17450993 -27456577 - L1ME LINE L1 -268 5902 5764 21 36 0 0 chr21 17451252 17451280 -27456290 + AT_rich Low_complexity Low_complexity 1 28 0 1526 229 86 94 chr21 17452212 17452870 -27454700 + MLT1E1 LTR MaLR 3 654 0 2615 33 3 0 chr21 17454337 17454644 -27452926 - AluY SINE Alu -3 308 1 466 234 0 0 chr21 17455077 17455171 -27452399 - AluJo SINE Alu -9 303 210 22 0 0 0 chr21 17455171 17455193 -27452377 + AT_rich Low_complexity Low_complexity 1 22 0 644 221 7 7 chr21 17455193 17455338 -27452232 - AluJo SINE Alu -167 145 1 2628 144 32 8 chr21 17456532 17457004 -27450566 - MER31A LTR ERV1 0 485 3 5142 181 25 15 chr21 17457838 17457949 -27449621 - L1PA16 LINE L1 0 6166 6058 1865 150 58 14 chr21 17457949 17458308 -27449262 - THE1C LTR MaLR 0 375 1 5142 181 25 15 chr21 17458308 17459636 -27447934 - L1PA16 LINE L1 -108 6058 4710 22 35 0 0 chr21 17459971 17460000 -27447570 + AT_rich Low_complexity Low_complexity 1 29 0 368 338 0 32 chr21 17460029 17460183 -27447387 - L2 LINE L2 0 3313 3165 735 174 38 0 chr21 17460482 17460614 -27446956 + LTR40a LTR ERVL 6 142 -377 1481 229 118 39 chr21 17460734 17460885 -27446685 + MER34 LTR ERV1 11 149 -393 2536 66 0 0 chr21 17460885 17461188 -27446382 + AluY SINE Alu 1 303 -8 1481 229 118 39 chr21 17461188 17461526 -27446044 + MER34 LTR ERV1 149 539 -3 400 234 106 76 chr21 17461632 17461802 -27445768 + LTR40b LTR ERVL 298 462 0 180 0 0 0 chr21 17462079 17462099 -27445471 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 752 144 0 53 chr21 17462099 17462231 -27445339 - FRAM SINE Alu -31 145 21 23 0 0 0 chr21 17462881 17462904 -27444666 + AT_rich Low_complexity Low_complexity 1 23 0 346 67 0 0 chr21 17463264 17463309 -27444261 - L1PA13 LINE L1 -19 6144 6100 21 57 0 0 chr21 17463829 17463864 -27443706 + AT_rich Low_complexity Low_complexity 1 35 0 194 396 126 9 chr21 17463920 17464031 -27443539 - MIR3 SINE MIR -43 165 42 505 282 34 43 chr21 17464090 17464299 -27443271 - HERVL LTR ERVL -1005 4649 4443 250 286 0 0 chr21 17464536 17464599 -27442971 - HERVL LTR ERVL -1455 4199 4137 * 1694 296 55 68 chr21 17464597 17464943 -27442627 - HERVL LTR ERVL -2882 2882 2533 2016 128 3 3 chr21 17464943 17465249 -27442321 - AluSg SINE Alu -2 308 3 1694 296 55 68 chr21 17465249 17466038 -27441532 - HERVL LTR ERVL -3231 2533 1761 1140 243 27 46 chr21 17466080 17466450 -27441120 - MLT1A1 LTR MaLR 0 365 3 660 242 258 73 chr21 17466516 17467049 -27440521 - MLT2F LTR ERVL 0 663 1 23844 40 3 0 chr21 17467880 17471601 -27435969 + L1PA5 LINE L1 2410 6146 -8 321 26 0 0 chr21 17472336 17472374 -27435196 + (TA)n Simple_repeat Simple_repeat 2 39 0 1276 258 55 68 chr21 17472410 17472935 -27434635 + MLT1E1 LTR MaLR 14 523 -101 11449 227 60 55 chr21 17472935 17473366 -27434204 - L1P4 LINE L1 -584 6284 5857 2460 71 0 0 chr21 17473366 17473677 -27433893 - AluY SINE Alu 0 311 1 11449 227 60 55 chr21 17473677 17474092 -27433478 - L1P4 LINE L1 -1011 5857 5445 492 71 0 0 chr21 17474092 17474162 -27433408 - Alu SINE Alu -5 307 238 11449 227 60 55 chr21 17474162 17474690 -27432880 - L1P4 LINE L1 -1423 5445 4921 2161 102 7 10 chr21 17474690 17474995 -27432575 + AluSx SINE Alu 2 305 -7 11449 227 60 55 chr21 17474995 17476934 -27430636 - L1P4 LINE L1 -1947 4921 2993 1915 144 0 10 chr21 17476934 17477233 -27430337 + AluSq SINE Alu 1 296 -17 11449 227 60 55 chr21 17477233 17479817 -27427753 - L1P4 LINE L1 -3875 2993 240 1576 228 29 81 chr21 17479822 17480366 -27427204 - L1 LINE L1 -3104 4461 3946 2176 154 37 19 chr21 17480398 17480770 -27426800 - MSTA LTR MaLR 0 428 50 1267 173 101 25 chr21 17480770 17481047 -27426523 - MSTA LTR MaLR 0 428 131 4491 196 21 18 chr21 17481047 17481448 -27426122 - L1 LINE L1 -6664 901 503 2135 107 0 0 chr21 17481448 17481746 -27425824 - AluSc SINE Alu -11 298 1 4491 196 21 18 chr21 17481746 17482232 -27425338 - L1 LINE L1 -7062 503 11 253 333 74 37 chr21 17482234 17482396 -27425174 + L2 LINE L2 2598 2765 -549 357 172 0 62 chr21 17482512 17482576 -27424994 + MER21B LTR ERV1 643 777 -154 328 199 66 99 chr21 17483971 17484122 -27423448 + HAL1 LINE L1 1231 1376 -1131 500 0 17 0 chr21 17484337 17484397 -27423173 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2800 229 91 40 chr21 17484484 17485287 -27422283 + MER21B LTR ERV1 19 862 -1 25 31 0 0 chr21 17485373 17485405 -27422165 + AT_rich Low_complexity Low_complexity 1 32 0 1096 84 26 0 chr21 17485635 17485790 -27421780 + L1MA1 LINE L1 6134 6292 -10 275 282 0 0 chr21 17486389 17486460 -27421110 + A-rich Low_complexity Low_complexity 2 72 0 350 229 41 8 chr21 17487090 17487212 -27420358 + (TA)n Simple_repeat Simple_repeat 1 126 0 1113 164 0 0 chr21 17487576 17487747 -27419823 - AluSg/x SINE Alu -5 307 137 343 306 8 16 chr21 17489270 17489391 -27418179 - MER94 DNA DNA -14 120 1 396 286 65 12 chr21 17489476 17489644 -27417926 - MER104 DNA Tc2 -1 179 3 29 47 0 0 chr21 17490536 17490579 -27416991 + AT_rich Low_complexity Low_complexity 1 43 0 1471 208 29 69 chr21 17490607 17491087 -27416483 - LTR37B LTR ERV1 -2 466 6 38 39 0 0 chr21 17491585 17491637 -27415933 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr21 17491825 17491856 -27415714 + AT_rich Low_complexity Low_complexity 1 31 0 2266 114 0 0 chr21 17492097 17492404 -27415166 - AluSx SINE Alu -5 307 1 21 36 0 0 chr21 17492410 17492438 -27415132 + AT_rich Low_complexity Low_complexity 1 28 0 200 196 0 39 chr21 17492975 17493026 -27414544 + (TAA)n Simple_repeat Simple_repeat 2 50 0 277 331 36 60 chr21 17493078 17493244 -27414326 - MIR SINE MIR -81 181 20 1957 65 111 8 chr21 17493713 17493966 -27413604 + AluY SINE Alu 1 305 -6 406 0 0 0 chr21 17493966 17494011 -27413559 + (TAAA)n Simple_repeat Simple_repeat 2 148 0 483 311 92 41 chr21 17494917 17495210 -27412360 + MLT1H LTR MaLR 134 441 -108 578 251 94 100 chr21 17495246 17495704 -27411866 - LTR16A1 LTR ERVL -2 455 1 196 294 49 92 chr21 17495833 17496017 -27411553 - L2 LINE L2 -528 2786 2611 1286 225 56 22 chr21 17496090 17496450 -27411120 - MLT1A2 LTR MaLR 0 374 3 235 320 57 33 chr21 17496553 17496675 -27410895 - L2 LINE L2 -910 2404 2280 270 360 55 0 chr21 17496895 17497059 -27410511 - MIR SINE MIR -74 188 16 1282 114 4 2 chr21 17498746 17498975 -27408595 + AluSp SINE Alu 20 301 -12 21 57 0 0 chr21 17499109 17499144 -27408426 + AT_rich Low_complexity Low_complexity 1 35 0 2419 88 0 0 chr21 17499358 17499677 -27407893 - LTR14C LTR ERVK 0 587 269 683 223 108 47 chr21 17499688 17499886 -27407684 - L1MEc LINE L1 -4145 2251 2028 2477 185 96 8 chr21 17499886 17500357 -27407213 + MLT2B3 LTR ERVL 1 522 -32 940 58 26 19 chr21 17500357 17500511 -27407059 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 2477 185 96 8 chr21 17500511 17500548 -27407022 + MLT2B3 LTR ERVL 522 554 0 683 223 108 47 chr21 17500548 17500645 -27406925 - L1MEc LINE L1 -4368 2028 1938 410 248 21 28 chr21 17500642 17500787 -27406783 - L1MEc LINE L1 -5571 825 682 * 1317 303 83 14 chr21 17500795 17501314 -27406256 - L1MEc LINE L1 -5795 601 47 2126 58 0 4 chr21 17501317 17501595 -27405975 + L1PA7 LINE L1 5875 6151 -3 2318 86 3 3 chr21 17502094 17502398 -27405172 + AluY SINE Alu 1 304 -7 29 78 0 0 chr21 17503047 17503111 -27404459 + AT_rich Low_complexity Low_complexity 1 64 0 1848 285 37 30 chr21 17503776 17504580 -27402990 - HERVL40 LTR ERVL -2102 3428 2562 903 250 58 66 chr21 17504581 17504929 -27402641 - HERVL40 LTR ERVL -3136 2394 2050 195 42 0 0 chr21 17504939 17504963 -27402607 + (TC)n Simple_repeat Simple_repeat 1 24 0 798 272 71 46 chr21 17504989 17505237 -27402333 - HERVL40 LTR ERVL -3963 1567 1310 2896 104 45 23 chr21 17505237 17505279 -27402291 - MLT2A2 LTR ERVL 0 453 413 333 0 0 0 chr21 17505279 17505316 -27402254 + (CA)n Simple_repeat Simple_repeat 2 38 0 2896 104 45 23 chr21 17505316 17505716 -27401854 - MLT2A2 LTR ERVL -40 413 1 798 272 71 46 chr21 17505716 17505750 -27401820 - HERVL40 LTR ERVL -4220 1310 1278 1552 214 34 26 chr21 17505772 17506111 -27401459 + L1MB5 LINE L1 5781 6125 -49 2743 146 94 14 chr21 17506111 17506598 -27400972 + MER1A DNA MER1_type 2 527 0 1552 214 34 26 chr21 17506598 17506641 -27400929 + L1MB5 LINE L1 6125 6166 -8 288 248 18 46 chr21 17507187 17507296 -27400274 - HERVL40 LTR ERVL -5424 106 1 1638 226 62 57 chr21 17507298 17507811 -27399759 - LTR40a LTR ERVL 0 519 4 1250 132 0 0 chr21 17508353 17508527 -27399043 - AluSg/x SINE Alu -10 300 127 560 59 50 10 chr21 17508635 17508736 -27398834 + GA-rich Low_complexity Low_complexity 4 108 0 225 314 40 65 chr21 17509589 17509713 -27397857 - L2 LINE L2 -16 3297 3177 1219 182 47 40 chr21 17510110 17510271 -27397299 - L1MB8 LINE L1 -6 6172 6007 2321 155 20 0 chr21 17510271 17510664 -27396906 - MER57A LTR ERV1 0 403 3 1219 182 47 40 chr21 17510664 17510799 -27396771 - L1MB8 LINE L1 -171 6007 5874 264 59 0 0 chr21 17511098 17511132 -27396438 + (TC)n Simple_repeat Simple_repeat 2 35 0 1739 148 25 3 chr21 17511133 17511416 -27396154 - AluSx SINE Alu -23 289 1 246 325 38 0 chr21 17511752 17511832 -27395738 - L2 LINE L2 -4 3268 3186 2150 160 44 42 chr21 17512007 17512271 -27395299 + Tigger2a DNA MER2_type 2 269 -2439 7382 153 32 4 chr21 17512271 17513535 -27394035 + HSMAR2 DNA Mariner 2 1300 -2 2150 160 44 42 chr21 17513535 17513702 -27393868 + Tigger2a DNA MER2_type 269 434 0 32 0 0 0 chr21 17513738 17513770 -27393800 + AT_rich Low_complexity Low_complexity 1 32 0 574 316 95 76 chr21 17514203 17514846 -27392724 + HAL1 LINE L1 272 926 -1581 24 53 0 0 chr21 17514980 17515018 -27392552 + AT_rich Low_complexity Low_complexity 1 38 0 249 307 78 10 chr21 17517535 17517727 -27389843 + HAL1 LINE L1 1913 2117 -390 2159 99 7 7 chr21 17518220 17518513 -27389057 + AluSx SINE Alu 1 293 -19 399 21 0 0 chr21 17518515 17518563 -27389007 + (CA)n Simple_repeat Simple_repeat 1 48 0 357 165 23 148 chr21 17518946 17519007 -27388563 + MER63 DNA MER1_type 901 968 -92 3351 184 24 12 chr21 17519007 17519677 -27387893 - L1MB7 LINE L1 -16 6168 5491 357 165 23 148 chr21 17519677 17519791 -27387779 + MER63 DNA MER1_type 968 1054 -6 206 322 48 35 chr21 17520036 17520263 -27387307 + L2 LINE L2 1538 1767 -1547 805 194 99 5 chr21 17520297 17520498 -27387072 - MER45R DNA AcHobo -378 1203 984 1291 223 16 0 chr21 17520501 17520752 -27386818 + L1M1 LINE L1 18 272 -7293 949 211 0 0 chr21 17521010 17521195 -27386375 + MLT1B LTR MaLR 1 185 -205 3008 160 19 4 chr21 17521198 17521730 -27385840 + L1MA5 LINE L1 5757 6296 -4 770 229 32 5 chr21 17521774 17521962 -27385608 + MLT1B LTR MaLR 192 384 -6 619 225 20 53 chr21 17521981 17522132 -27385438 - MER45 DNA AcHobo -1435 146 1 1308 209 3 46 chr21 17522415 17522722 -27384848 + AluJo SINE Alu 1 294 -18 210 278 0 0 chr21 17522812 17522866 -27384704 - MIR SINE MIR -42 220 167 2117 107 0 10 chr21 17522940 17523248 -27384322 + AluSx SINE Alu 1 305 -7 276 292 146 22 chr21 17523250 17523435 -27384135 + L2 LINE L2 2430 2637 -677 201 250 19 157 chr21 17523650 17523758 -27383812 + L2 LINE L2 2977 3069 -203 220 309 0 0 chr21 17523921 17523976 -27383594 + MIR SINE MIR 32 86 -176 244 296 0 14 chr21 17524033 17524104 -27383466 + MIR SINE MIR 161 230 -32 2704 120 21 2 chr21 17524125 17524551 -27383019 - MER57B LTR ERV1 0 434 1 13218 169 39 3 chr21 17524560 17526885 -27380685 - Tigger1 DNA MER2_type 0 2418 10 201 39 0 0 chr21 17526885 17526911 -27380659 + (TG)n Simple_repeat Simple_repeat 2 27 0 1796 208 39 25 chr21 17527347 17527769 -27379801 - MLT2B2 LTR ERVL -40 480 6 1059 255 35 19 chr21 17527877 17528191 -27379379 - MLT1H LTR MaLR -224 325 7 2320 156 34 10 chr21 17529490 17529908 -27377662 + MSTA LTR MaLR 1 428 0 232 227 0 0 chr21 17529922 17529966 -27377604 + L2 LINE L2 3270 3313 0 735 255 11 21 chr21 17530605 17530793 -27376777 + MLT1H LTR MaLR 97 282 -267 2687 35 0 0 chr21 17532409 17532719 -27374851 + AluY SINE Alu 1 310 -1 1679 196 0 0 chr21 17532735 17533026 -27374544 + AluSx SINE Alu 9 299 -13 387 41 0 0 chr21 17534625 17534674 -27372896 + (CA)n Simple_repeat Simple_repeat 2 50 0 350 291 158 0 chr21 17534683 17534848 -27372722 - MIR SINE MIR -65 197 7 230 283 141 89 chr21 17535146 17535337 -27372233 - MIR SINE MIR -59 203 3 975 245 13 39 chr21 17535925 17535968 -27371602 - L1MD3 LINE L1 -19 7976 7933 541 89 13 0 chr21 17535968 17536047 -27371523 + MADE1 DNA Mariner 1 80 0 975 245 13 39 chr21 17536047 17536201 -27371369 - L1MD3 LINE L1 -62 7933 7787 2439 72 0 3 chr21 17536201 17536507 -27371063 - AluY SINE Alu -6 305 1 975 245 13 39 chr21 17536507 17536618 -27370952 - L1MD3 LINE L1 -208 7787 7675 22 80 0 0 chr21 17536779 17536829 -27370741 + AT_rich Low_complexity Low_complexity 1 50 0 2573 118 13 5 chr21 17537045 17537417 -27370153 + THE1C LTR MaLR 1 375 0 340 246 33 25 chr21 17537919 17538041 -27369529 + GA-rich Low_complexity Low_complexity 1 123 0 220 242 30 0 chr21 17539790 17539856 -27367714 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 284 349 97 11 chr21 17540850 17541025 -27366545 - L2 LINE L2 -454 2860 2671 241 349 155 30 chr21 17541569 17541833 -27365737 + L2 LINE L2 2378 2674 -640 1359 266 128 6 chr21 17542115 17542638 -27364932 - L1MB7 LINE L1 -1 6183 5597 1301 165 57 0 chr21 17542638 17542868 -27364702 - AluJb SINE Alu -64 248 6 2217 242 23 29 chr21 17542872 17543834 -27363736 - L1MB7 LINE L1 -574 5604 4656 304 226 19 19 chr21 17544236 17544342 -27363228 + (TA)n Simple_repeat Simple_repeat 2 107 0 2010 140 56 25 chr21 17544624 17544981 -27362589 - MER39 LTR ERV1 0 707 340 305 182 12 4 chr21 17544982 17545062 -27362508 - MER39 LTR ERV1 -418 254 154 589 157 67 129 chr21 17545065 17545243 -27362327 + THE1C LTR MaLR 3 169 -206 2428 43 3 0 chr21 17545247 17545547 -27362023 + L1PA4 LINE L1 5852 6152 -3 209 122 24 0 chr21 17545576 17545617 -27361953 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1054 123 29 44 chr21 17545619 17545823 -27361747 + THE1C LTR MaLR 175 375 0 1045 136 114 5 chr21 17545823 17546006 -27361564 - MER39 LTR ERV1 -504 203 1 264 30 0 0 chr21 17546576 17546609 -27360961 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 27 73 0 0 chr21 17548946 17549001 -27358569 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr21 17549960 17549986 -27357584 + AT_rich Low_complexity Low_complexity 1 26 0 368 268 39 46 chr21 17550198 17550351 -27357219 + L2 LINE L2 2226 2377 -937 294 29 0 0 chr21 17550954 17550989 -27356581 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 321 68 0 0 chr21 17550988 17551032 -27356538 + (TG)n Simple_repeat Simple_repeat 1 44 0 5985 194 58 35 chr21 17551034 17552138 -27355432 - L1MC3 LINE L1 -743 5403 4326 369 0 0 0 chr21 17552138 17552179 -27355391 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1985 102 7 18 chr21 17552182 17552467 -27355103 - AluSp SINE Alu -31 282 1 5985 194 58 35 chr21 17552467 17552973 -27354597 - L1MC3 LINE L1 -456 5690 5197 564 191 23 30 chr21 17552992 17553123 -27354447 - L1MCb LINE L1 -5742 303 174 3051 234 19 22 chr21 17553333 17554159 -27353411 + L1MC3 LINE L1 6153 6329 -4 1854 206 71 64 chr21 17554627 17555176 -27352394 + MLT2B3 LTR ERVL 1 553 -1 28 0 0 0 chr21 17557794 17557822 -27349748 + AT_rich Low_complexity Low_complexity 1 28 0 2182 138 36 17 chr21 17557826 17558238 -27349332 - L1MA3 LINE L1 -6 6299 5880 21 57 0 0 chr21 17558652 17558687 -27348883 + AT_rich Low_complexity Low_complexity 1 35 0 1556 192 20 10 chr21 17560567 17560864 -27346706 - AluJo SINE Alu -12 300 1 22 0 0 0 chr21 17561914 17561936 -27345634 + AT_rich Low_complexity Low_complexity 1 22 0 307 260 39 29 chr21 17562835 17562939 -27344631 + MIR3 SINE MIR 67 171 -37 384 338 76 33 chr21 17564917 17565313 -27342257 - L1MC5 LINE L1 -34 7927 7515 278 388 8 0 chr21 17565448 17565569 -27342001 - L3 LINE CR1 -37 1540 1419 3354 224 25 58 chr21 17565776 17567400 -27340170 - L1MC1 LINE L1 -105 6228 4653 5687 103 0 0 chr21 17567505 17567696 -27339874 - L1PB1 LINE L1 0 6151 5961 2002 138 3 0 chr21 17567696 17567993 -27339577 - AluSp SINE Alu -15 298 1 5687 103 0 0 chr21 17567993 17568806 -27338764 - L1PB1 LINE L1 -189 5962 5161 7515 213 20 1 chr21 17568822 17570113 -27337457 + L1 LINE L1 2377 3709 -2437 213 65 0 0 chr21 17570113 17570144 -27337426 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7515 213 20 1 chr21 17570144 17570539 -27337031 + L1 LINE L1 3709 4095 -2051 186 103 0 0 chr21 17571834 17571863 -27335707 + (TA)n Simple_repeat Simple_repeat 1 29 0 201 239 0 0 chr21 17572182 17572228 -27335342 + A-rich Low_complexity Low_complexity 3 48 0 180 0 0 0 chr21 17573158 17573178 -27334392 + (TA)n Simple_repeat Simple_repeat 1 20 0 185 156 0 22 chr21 17573244 17573289 -27334281 + (TA)n Simple_repeat Simple_repeat 1 44 0 232 246 101 43 chr21 17574633 17574771 -27332799 + MLT1K LTR MaLR 396 541 -47 23 0 0 0 chr21 17575011 17575034 -27332536 + AT_rich Low_complexity Low_complexity 1 23 0 843 239 100 27 chr21 17575613 17575872 -27331698 + LTR50 LTR ERVL 4 281 -514 212 143 24 0 chr21 17576098 17576140 -27331430 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2835 206 15 18 chr21 17576143 17576744 -27330826 + MER6A DNA MER2_type 6 604 -1 277 136 59 34 chr21 17576744 17576862 -27330708 + (TA)n Simple_repeat Simple_repeat 2 122 0 * 342 168 16 79 chr21 17576774 17577010 -27330560 + (TATAA)n Simple_repeat Simple_repeat 1 221 0 1446 214 84 9 chr21 17577017 17577349 -27330221 - MLT1A1 LTR MaLR 0 365 9 419 188 0 8 chr21 17577406 17577534 -27330036 + (TA)n Simple_repeat Simple_repeat 2 128 0 435 19 0 0 chr21 17578884 17578936 -27328634 + (CA)n Simple_repeat Simple_repeat 1 52 0 34 96 0 0 chr21 17579171 17579275 -27328295 + AT_rich Low_complexity Low_complexity 1 104 0 1344 244 98 34 chr21 17579835 17580045 -27327525 + MLT1C LTR MaLR 1 196 -271 2180 108 7 0 chr21 17580045 17580350 -27327220 - AluSx SINE Alu -5 307 1 1344 244 98 34 chr21 17580350 17580578 -27326992 + MLT1C LTR MaLR 196 467 0 250 232 30 20 chr21 17580876 17580975 -27326595 + (TAAAG)n Simple_repeat Simple_repeat 3 102 0 23 0 0 0 chr21 17581202 17581225 -27326345 + AT_rich Low_complexity Low_complexity 1 23 0 2358 178 34 2 chr21 17581969 17582412 -27325158 + MSTB2 LTR MaLR 1 457 0 240 35 0 0 chr21 17582576 17582605 -27324965 + (TG)n Simple_repeat Simple_repeat 2 30 0 211 176 0 0 chr21 17582804 17582838 -27324732 + (CAT)n Simple_repeat Simple_repeat 3 36 0 4171 169 32 6 chr21 17582839 17583617 -27323953 - L1MC1 LINE L1 -197 6136 5341 261 367 25 8 chr21 17583855 17583975 -27323595 - LTR67 LTR ERVL -356 201 80 246 208 0 0 chr21 17584901 17584954 -27322616 + (TA)n Simple_repeat Simple_repeat 2 54 0 243 0 0 0 chr21 17585882 17585909 -27321661 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr21 17586312 17586340 -27321230 + AT_rich Low_complexity Low_complexity 1 28 0 762 243 75 20 chr21 17587578 17588019 -27319551 + Zaphod DNA AcHobo 511 975 -3056 677 229 116 48 chr21 17588083 17588455 -27319115 + Zaphod DNA AcHobo 3626 4022 -9 229 313 107 71 chr21 17588732 17589042 -27318528 + MLT1K LTR MaLR 190 510 -78 301 302 153 52 chr21 17589473 17589658 -27317912 - L2 LINE L2 -186 3127 2901 1989 158 48 22 chr21 17589658 17590013 -27317557 + THE1B LTR MaLR 1 364 0 301 302 153 52 chr21 17590013 17590115 -27317455 - L2 LINE L2 -412 2901 2811 1927 198 19 3 chr21 17590361 17590720 -27316850 - MLT1A1 LTR MaLR 0 365 1 376 299 124 44 chr21 17590978 17591342 -27316228 - MLT1J1 LTR MaLR -33 413 21 25 0 0 0 chr21 17592473 17592498 -27315072 + AT_rich Low_complexity Low_complexity 1 25 0 1431 134 5 0 chr21 17592589 17592805 -27314765 - AluSg/x SINE Alu 0 312 96 374 214 51 20 chr21 17592896 17592994 -27314576 - MLT1J2 LTR MaLR -345 105 5 2662 208 71 79 chr21 17595097 17595873 -27311697 - MER21A LTR ERV1 -26 905 136 724 169 36 97 chr21 17595857 17596052 -27311518 - MER21A LTR ERV1 -736 195 13 * 29 70 0 0 chr21 17596679 17596736 -27310834 + AT_rich Low_complexity Low_complexity 1 57 0 259 310 75 60 chr21 17598154 17598390 -27309180 - L1ME4a LINE L1 -195 5926 5680 2161 168 16 45 chr21 17598390 17598837 -27308733 - Tigger2a DNA MER2_type 0 434 1 259 310 75 60 chr21 17598837 17599000 -27308570 - L1ME4a LINE L1 -441 5680 5521 1200 263 67 34 chr21 17599136 17599494 -27308076 - MER82 DNA MER2_type -3 650 281 941 215 5 0 chr21 17599518 17599704 -27307866 + MER2 DNA MER2_type 23 209 -136 281 204 19 0 chr21 17599734 17599788 -27307782 + MER2 DNA MER2_type 269 323 -22 1491 185 0 11 chr21 17599804 17600074 -27307496 - MER82 DNA MER2_type -373 280 14 290 328 99 68 chr21 17600112 17600402 -27307168 + L1MEd LINE L1 115 394 -5725 2672 29 7 0 chr21 17600402 17600710 -27306860 + AluY SINE Alu 2 311 0 290 328 99 68 chr21 17600710 17600962 -27306608 + L1MEd LINE L1 394 674 -5445 34 65 0 0 chr21 17601062 17601124 -27306446 + AT_rich Low_complexity Low_complexity 1 62 0 304 320 115 51 chr21 17601172 17601425 -27306145 + L1MEd LINE L1 989 1257 -4862 1927 148 0 13 chr21 17601616 17601914 -27305656 + AluSx SINE Alu 1 294 -18 294 164 0 0 chr21 17601924 17601979 -27305591 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 68 0 0 chr21 17602181 17602225 -27305345 + AT_rich Low_complexity Low_complexity 1 44 0 284 102 20 0 chr21 17602742 17602791 -27304779 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 228 301 84 75 chr21 17603000 17603213 -27304357 + LTR40a LTR ERVL 113 327 -192 204 135 0 0 chr21 17603376 17603413 -27304157 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1459 86 14 32 chr21 17603413 17603634 -27303936 - AluSx SINE Alu -32 280 64 360 331 118 6 chr21 17603634 17604117 -27303453 + L1M4 LINE L1 3911 4447 -1699 27 29 0 0 chr21 17604126 17604160 -27303410 + AT_rich Low_complexity Low_complexity 1 34 0 391 354 113 9 chr21 17604206 17604551 -27303019 + L1M4 LINE L1 4560 4940 -1206 22 0 0 0 chr21 17604651 17604673 -27302897 + AT_rich Low_complexity Low_complexity 1 22 0 262 246 0 0 chr21 17604889 17604946 -27302624 - MIR SINE MIR -70 192 136 2162 95 0 10 chr21 17606130 17606426 -27301144 + AluSx SINE Alu 1 293 -19 2148 92 3 0 chr21 17607008 17607291 -27300279 + AluSg SINE Alu 1 284 -26 432 0 0 0 chr21 17607291 17607339 -27300231 + (CATA)n Simple_repeat Simple_repeat 2 49 0 277 176 12 35 chr21 17607590 17607675 -27299895 + CT-rich Low_complexity Low_complexity 2 84 0 340 276 0 0 chr21 17607838 17607914 -27299656 + L2 LINE L2 3238 3313 0 2201 161 31 0 chr21 17608070 17608461 -27299109 + L1PB4 LINE L1 5754 6156 0 234 359 80 18 chr21 17608538 17608859 -27298711 + L2 LINE L2 2828 3217 -96 502 186 0 110 chr21 17609104 17609249 -27298321 - MER3 DNA MER1_type 0 209 81 1562 195 96 3 chr21 17609319 17609653 -27297917 + MLT1A1 LTR MaLR 1 365 0 1388 235 104 46 chr21 17610309 17610790 -27296780 + MER67D LTR ERV1 3 511 -3 25 0 0 0 chr21 17610867 17610892 -27296678 + AT_rich Low_complexity Low_complexity 1 25 0 410 165 0 12 chr21 17611199 17611284 -27296286 + CT-rich Low_complexity Low_complexity 3 86 0 243 0 0 0 chr21 17611302 17611329 -27296241 + (TG)n Simple_repeat Simple_repeat 1 27 0 251 231 132 33 chr21 17612651 17612742 -27294828 + LTR48 LTR ERV1 353 452 -335 5757 129 21 39 chr21 17612742 17614239 -27293331 + L1PA10 LINE L1 2147 3670 -2498 312 27 0 0 chr21 17614239 17614276 -27293294 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5757 129 21 39 chr21 17614276 17616698 -27290872 + L1PA10 LINE L1 3670 6165 -3 493 285 54 62 chr21 17617540 17617782 -27289788 + L1MC4 LINE L1 6746 6985 -1057 25 31 0 0 chr21 17618167 17618199 -27289371 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 17619172 17619195 -27288375 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr21 17619523 17619560 -27288010 + AT_rich Low_complexity Low_complexity 1 37 0 542 159 23 15 chr21 17620722 17620854 -27286716 + CT-rich Low_complexity Low_complexity 2 134 0 305 117 17 0 chr21 17621014 17621074 -27286496 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 57 0 0 chr21 17621255 17621290 -27286280 + AT_rich Low_complexity Low_complexity 1 35 0 238 228 178 40 chr21 17622330 17622431 -27285139 + L2 LINE L2 3198 3312 -1 22 56 0 0 chr21 17622601 17622637 -27284933 + AT_rich Low_complexity Low_complexity 1 36 0 321 185 0 0 chr21 17623373 17623438 -27284132 + GA-rich Low_complexity Low_complexity 3 67 0 1917 188 6 0 chr21 17624917 17625258 -27282312 + MER61A LTR ERV1 1 343 0 219 286 0 0 chr21 17626553 17626616 -27280954 + (CATA)n Simple_repeat Simple_repeat 3 65 0 1881 153 3 13 chr21 17626648 17626962 -27280608 - AluSx SINE Alu -1 311 1 28 61 0 0 chr21 17627458 17627507 -27280063 + AT_rich Low_complexity Low_complexity 1 49 0 584 292 135 0 chr21 17627915 17628093 -27279477 + MER119 DNA MER1_type 4 205 -378 851 176 35 81 chr21 17628108 17628287 -27279283 + MER119 DNA MER1_type 329 494 -89 2136 126 7 7 chr21 17628287 17628589 -27278981 - AluSx SINE Alu -8 304 3 851 176 35 81 chr21 17628589 17628670 -27278900 + MER119 DNA MER1_type 494 577 -6 1648 217 9 19 chr21 17628975 17629369 -27278201 - MER65C LTR ERV1 -58 512 3 300 288 101 35 chr21 17629413 17629611 -27277959 + MLT1J LTR MaLR 1 211 -300 1551 196 3 25 chr21 17629922 17630238 -27277332 - AluJb SINE Alu -2 310 2 222 146 21 0 chr21 17630634 17630682 -27276888 + (TA)n Simple_repeat Simple_repeat 2 50 0 1427 239 98 25 chr21 17630893 17631291 -27276279 + MLT1F1 LTR MaLR 1 427 -140 23 33 0 0 chr21 17632497 17632527 -27275043 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr21 17633448 17633496 -27274074 + AT_rich Low_complexity Low_complexity 1 48 0 219 300 14 0 chr21 17633775 17633784 -27273786 + (TATATG)n Simple_repeat Simple_repeat 4 11 -63 189 0 0 0 chr21 17633784 17633805 -27273765 + (CA)n Simple_repeat Simple_repeat 2 22 0 219 300 14 0 chr21 17633805 17633865 -27273705 + (TATATG)n Simple_repeat Simple_repeat 11 74 0 1101 131 0 0 chr21 17633866 17634042 -27273528 + (TA)n Simple_repeat Simple_repeat 1 176 0 1749 161 64 25 chr21 17634042 17634402 -27273168 - THE1C LTR MaLR -1 374 1 544 295 53 0 chr21 17634490 17634717 -27272853 + L1ME LINE L1 3672 3910 -2236 1063 138 35 42 chr21 17634718 17635002 -27272568 - THE1C LTR MaLR 0 375 1 5768 154 9 40 chr21 17635002 17636009 -27271561 - THE1C-int LTR MaLR 0 1580 605 850 309 25 37 chr21 17636055 17636463 -27271107 + L1ME LINE L1 3943 4345 -1801 599 242 23 48 chr21 17636470 17636734 -27270836 + L1ME LINE L1 5362 5614 -557 24 32 0 0 chr21 17637280 17637311 -27270259 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 17638046 17638069 -27269501 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 17639149 17639177 -27268393 + AT_rich Low_complexity Low_complexity 1 28 0 449 196 34 7 chr21 17639773 17639889 -27267681 - MLT1F1 LTR MaLR 0 567 474 1546 230 71 29 chr21 17642941 17643004 -27264566 - MLT2B1 LTR ERVL 0 515 456 369 43 0 0 chr21 17643004 17643051 -27264519 + (CA)n Simple_repeat Simple_repeat 2 48 0 1546 230 71 29 chr21 17643051 17643496 -27264074 - MLT2B1 LTR ERVL -59 456 1 211 192 39 0 chr21 17643683 17643735 -27263835 + (CTTAA)n Simple_repeat Simple_repeat 4 57 0 22 35 0 0 chr21 17643833 17643862 -27263708 + AT_rich Low_complexity Low_complexity 1 29 0 276 208 65 52 chr21 17644698 17644775 -27262795 - L2 LINE L2 0 3313 3236 1656 192 16 0 chr21 17645407 17645592 -27261978 - AluJb SINE Alu 0 312 119 252 0 0 0 chr21 17645592 17645620 -27261950 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1656 192 16 0 chr21 17645620 17645741 -27261829 - AluJb SINE Alu -193 119 1 371 349 147 18 chr21 17646078 17646419 -27261151 + L2 LINE L2 2925 3309 -4 21 36 0 0 chr21 17646399 17646427 -27261143 + AT_rich Low_complexity Low_complexity 1 28 0 * 2740 10 0 3 chr21 17646615 17646923 -27260647 + AluYa5 SINE Alu 1 307 -4 4674 207 54 31 chr21 17647219 17648408 -27259162 - L1MC3 LINE L1 0 7785 6570 300 183 0 0 chr21 17648412 17648505 -27259065 + (TA)n Simple_repeat Simple_repeat 2 94 0 859 249 40 16 chr21 17648509 17648762 -27258808 - L1MC3 LINE L1 -1139 6646 6388 2959 251 101 44 chr21 17648796 17649576 -27257994 - L1MCb LINE L1 -3942 2803 2069 2674 29 0 0 chr21 17649576 17649882 -27257688 + AluYb8 SINE Alu 1 306 -12 2959 251 101 44 chr21 17649882 17650101 -27257469 - L1MCb LINE L1 -4676 2069 1864 180 0 0 0 chr21 17650101 17650121 -27257449 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2959 251 101 44 chr21 17650121 17650268 -27257302 - L1MCb LINE L1 -4881 1864 1727 1540 138 0 0 chr21 17650268 17650485 -27257085 - AluSg/x SINE Alu -19 293 77 2959 251 101 44 chr21 17650485 17651063 -27256507 - L1MCb LINE L1 -5018 1727 1183 1940 137 3 25 chr21 17651063 17651377 -27256193 + AluSx SINE Alu 1 307 -5 2959 251 101 44 chr21 17651377 17652221 -27255349 - L1MCb LINE L1 -5562 1183 42 1956 150 34 47 chr21 17653880 17654093 -27253477 - THE1C LTR MaLR 0 375 168 2054 121 17 3 chr21 17654093 17654382 -27253188 + AluSx SINE Alu 3 295 -17 1956 150 34 47 chr21 17654382 17654548 -27253022 - THE1C LTR MaLR -207 168 1 23 0 0 0 chr21 17655086 17655109 -27252461 + AT_rich Low_complexity Low_complexity 1 23 0 2273 94 0 7 chr21 17659678 17659975 -27247595 + AluSg SINE Alu 3 297 -13 2056 143 0 0 chr21 17660630 17660937 -27246633 - AluSp SINE Alu -6 307 1 232 341 24 24 chr21 17661003 17661170 -27246400 - MLT1L LTR MaLR -312 303 137 191 303 40 13 chr21 17661271 17661347 -27246223 + MIR SINE MIR 167 244 -18 1138 229 26 105 chr21 17663166 17663531 -27244039 + L1M4 LINE L1 2724 3028 -3118 1080 151 0 6 chr21 17663531 17663697 -27243873 + U1 snRNA snRNA 1 165 0 1138 229 26 105 chr21 17663697 17663911 -27243659 + L1M4 LINE L1 3028 3257 -2889 248 240 27 0 chr21 17663914 17663989 -27243581 - L1MC4 LINE L1 -1352 6690 6614 293 222 0 8 chr21 17664019 17664145 -27243425 + (TA)n Simple_repeat Simple_repeat 2 126 0 225 300 0 0 chr21 17664151 17664241 -27243329 - L1MC4 LINE L1 -1339 6703 6614 306 138 0 0 chr21 17664241 17664299 -27243271 + (TA)n Simple_repeat Simple_repeat 2 59 0 225 300 0 0 chr21 17664305 17664395 -27243175 - L1MC4 LINE L1 -1339 6703 6614 1314 130 139 196 chr21 17664409 17664832 -27242738 - MER4A LTR ERV1 -5 659 261 452 183 0 12 chr21 17664833 17664915 -27242655 - MER4A LTR ERV1 -567 97 17 1281 303 100 4 chr21 17664949 17665820 -27241750 + L1M4 LINE L1 3262 4261 -1885 2200 116 0 0 chr21 17665830 17666140 -27241430 + AluSg SINE Alu 1 310 0 2548 276 25 10 chr21 17666691 17667607 -27239963 + L1M4 LINE L1 2211 3140 -3006 1972 103 41 14 chr21 17668059 17668350 -27239220 - AluSx SINE Alu -13 299 1 189 74 0 0 chr21 17668452 17668479 -27239091 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 28 71 0 0 chr21 17669791 17669847 -27237723 + AT_rich Low_complexity Low_complexity 1 56 0 395 358 74 42 chr21 17670487 17670772 -27236798 + L1MEd LINE L1 124 417 -5702 2207 100 3 7 chr21 17671041 17671350 -27236220 - AluSg SINE Alu -2 308 1 215 159 23 0 chr21 17671526 17671570 -27236000 + A-rich Low_complexity Low_complexity 2 46 0 403 312 37 70 chr21 17671626 17671841 -27235729 - LTR16A1 LTR ERVL -2 455 248 297 320 62 0 chr21 17672172 17672350 -27235220 + L1MEd LINE L1 2203 2391 -3738 1297 289 87 47 chr21 17672477 17673475 -27234095 - L1ME3A LINE L1 -4 6166 5129 26 74 0 0 chr21 17673544 17673598 -27233972 + AT_rich Low_complexity Low_complexity 1 54 0 1522 198 3 20 chr21 17673598 17673891 -27233679 - AluJo SINE Alu -24 288 1 632 285 78 50 chr21 17673981 17674827 -27232743 - L1ME3A LINE L1 -1250 4896 4027 1047 200 81 10 chr21 17674876 17675186 -27232384 + L1MEd LINE L1 2960 3291 -2838 1629 203 25 6 chr21 17675210 17675570 -27232000 + L1MEd LINE L1 3657 4023 -2106 21 57 0 0 chr21 17675571 17675606 -27231964 + AT_rich Low_complexity Low_complexity 1 35 0 319 344 78 0 chr21 17675720 17675848 -27231722 + MIR SINE MIR 54 191 -71 281 26 26 0 chr21 17675850 17675888 -27231682 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 70 0 0 chr21 17676496 17676539 -27231031 + AT_rich Low_complexity Low_complexity 1 43 0 1467 140 27 102 chr21 17676741 17677076 -27230494 - AluYb8 SINE Alu -8 310 1 4045 117 14 11 chr21 17681113 17681755 -27225815 - L1PA13 LINE L1 0 6163 5520 372 47 31 16 chr21 17682844 17682908 -27224662 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1134 132 0 0 chr21 17683515 17683682 -27223888 + AluSg/x SINE Alu 131 297 -13 282 188 0 0 chr21 17683725 17683773 -27223797 + MLT1F LTR MaLR 489 536 -6 25 0 0 0 chr21 17684882 17684907 -27222663 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr21 17685271 17685297 -27222273 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 31 58 0 0 chr21 17685336 17685388 -27222182 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr21 17685903 17685926 -27221644 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr21 17686339 17686362 -27221208 + AT_rich Low_complexity Low_complexity 1 23 0 458 335 72 69 chr21 17686809 17687099 -27220471 + L2 LINE L2 1142 1432 -1882 654 346 82 16 chr21 17687106 17687473 -27220097 + L2 LINE L2 2053 2443 -871 510 269 60 25 chr21 17687501 17687771 -27219799 + MLT1J1 LTR MaLR 40 322 -128 337 342 109 45 chr21 17687898 17688398 -27219172 + L2 LINE L2 2500 3041 -272 237 275 133 32 chr21 17688575 17688865 -27218705 - L1ME LINE L1 -539 5631 5319 5146 153 22 35 chr21 17689227 17690377 -27217193 + L1PA15 LINE L1 5007 6152 -13 2095 127 7 0 chr21 17690514 17690813 -27216757 - AluSx SINE Alu -11 301 1 441 177 25 0 chr21 17690833 17690912 -27216658 - AluY SINE Alu -16 295 215 388 285 54 16 chr21 17692084 17692270 -27215300 - MER46C DNA MER2_type -145 193 1 360 350 68 51 chr21 17692472 17692900 -27214670 - L1MEc LINE L1 -4641 1755 1321 469 299 19 33 chr21 17693130 17693333 -27214237 - L1ME2 LINE L1 -9 6155 5954 1623 226 8 8 chr21 17693333 17693696 -27213874 - MLT1A1 LTR MaLR 0 365 3 28 48 0 0 chr21 17693732 17693774 -27213796 + AT_rich Low_complexity Low_complexity 1 42 0 2744 19 0 0 chr21 17693801 17694114 -27213456 + AluYb8 SINE Alu 1 313 -5 6996 40 1 0 chr21 17694276 17695120 -27212450 - L1PA4 LINE L1 -1 6154 5310 4890 34 3 0 chr21 17695115 17695712 -27211858 + L1PA4 LINE L1 4711 5309 -837 * 667 208 8 0 chr21 17696420 17696540 -27211030 - FLAM_A SINE Alu -16 126 6 21 36 0 0 chr21 17697137 17697165 -27210405 + AT_rich Low_complexity Low_complexity 1 28 0 697 304 39 0 chr21 17698033 17698240 -27209330 + MER58C DNA MER1_type 1 215 0 1939 221 34 23 chr21 17698252 17698782 -27208788 - L1MB8 LINE L1 0 6178 5643 1025 249 132 15 chr21 17698794 17699187 -27208383 - L1MB8 LINE L1 -801 5345 4907 667 176 210 63 chr21 17702332 17702570 -27205000 + MLT1A1 LTR MaLR 1 273 -92 432 254 45 9 chr21 17702947 17703116 -27204454 + FLAM_A SINE Alu 1 173 0 1472 324 101 29 chr21 17704225 17705291 -27202279 + L2 LINE L2 2061 3212 -101 1851 233 75 60 chr21 17705291 17705896 -27201674 - MLT1E2 LTR MaLR 0 626 2 464 335 80 65 chr21 17706592 17707206 -27200364 - L2 LINE L2 -117 3196 2567 25 31 0 0 chr21 17707344 17707376 -27200194 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 17708846 17708885 -27198685 + AT_rich Low_complexity Low_complexity 1 39 0 1576 187 26 0 chr21 17708885 17709158 -27198412 - AluJo SINE Alu -25 287 8 23 0 0 0 chr21 17711440 17711463 -27196107 + AT_rich Low_complexity Low_complexity 1 23 0 271 293 9 19 chr21 17711469 17711575 -27195995 + GA-rich Low_complexity Low_complexity 2 106 0 21 0 0 0 chr21 17711886 17711907 -27195663 + AT_rich Low_complexity Low_complexity 1 21 0 582 198 26 9 chr21 17711909 17712025 -27195545 - FLAM_A SINE Alu -15 118 1 254 336 103 26 chr21 17712255 17712526 -27195044 + L3 LINE CR1 1212 1503 -74 2031 148 0 0 chr21 17712635 17712933 -27194637 + AluSx SINE Alu 3 300 -12 22 0 0 0 chr21 17713063 17713085 -27194485 + AT_rich Low_complexity Low_complexity 1 22 0 430 291 156 48 chr21 17713426 17713951 -27193619 - MLT1L LTR MaLR -4 611 30 24 53 0 0 chr21 17715044 17715082 -27192488 + AT_rich Low_complexity Low_complexity 1 38 0 353 181 49 62 chr21 17715161 17715305 -27192265 - MER69 DNA AcHobo -7 2519 2378 21 36 0 0 chr21 17715774 17715802 -27191768 + AT_rich Low_complexity Low_complexity 1 28 0 1497 175 45 78 chr21 17717103 17717502 -27190068 - MLT1B LTR MaLR 0 390 5 180 200 0 0 chr21 17717632 17717672 -27189898 + (CATA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr21 17717869 17717893 -27189677 + AT_rich Low_complexity Low_complexity 1 24 0 2271 89 3 3 chr21 17718335 17718639 -27188931 + AluSp SINE Alu 1 304 -9 1868 188 9 6 chr21 17718935 17719280 -27188290 - MER7A DNA MER2_type -1 345 2 260 242 0 16 chr21 17720227 17720289 -27187281 - MLT2D LTR ERVL -353 61 1 923 237 40 18 chr21 17721364 17721588 -27185982 + MLT2B1 LTR ERVL 1 229 -291 185 0 40 0 chr21 17721592 17721617 -27185953 + (TC)n Simple_repeat Simple_repeat 1 26 0 261 246 14 14 chr21 17721636 17721705 -27185865 + MLT2B1 LTR ERVL 386 454 -66 405 81 0 0 chr21 17721705 17721767 -27185803 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 258 136 0 0 chr21 17723655 17723699 -27183871 + (CA)n Simple_repeat Simple_repeat 1 44 0 2311 156 4 31 chr21 17723777 17724227 -27183343 + L1MA4A LINE L1 5864 6301 -2 220 246 0 16 chr21 17725434 17725495 -27182075 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr21 17725968 17726008 -27181562 + AT_rich Low_complexity Low_complexity 1 40 0 315 0 0 0 chr21 17726586 17726621 -27180949 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 0 0 0 chr21 17726645 17726677 -27180893 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 873 248 75 28 chr21 17726693 17726967 -27180603 + L1MC4 LINE L1 6722 7011 -1031 1653 188 33 18 chr21 17726967 17727049 -27180521 - MER2 DNA MER2_type 0 344 265 2251 101 0 16 chr21 17727049 17727367 -27180203 + AluSp SINE Alu 1 313 0 1653 188 33 18 chr21 17727367 17727620 -27179950 - MER2 DNA MER2_type -79 265 4 575 236 0 0 chr21 17727805 17727915 -27179655 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 232 190 40 10 chr21 17728065 17728165 -27179405 + (TA)n Simple_repeat Simple_repeat 1 103 0 296 355 47 33 chr21 17728945 17729156 -27178414 - MLT1J LTR MaLR -115 396 183 254 302 146 40 chr21 17729560 17729937 -27177633 - HAL1 LINE L1 -860 1647 1231 1793 178 98 25 chr21 17729965 17730364 -27177206 + MSTA LTR MaLR 1 428 0 8492 161 6 49 chr21 17730366 17730741 -27176829 + MSTA-int LTR MaLR 3 393 -1187 2187 81 0 3 chr21 17730741 17731052 -27176518 - AluY SINE Alu 0 310 1 8492 161 6 49 chr21 17731052 17732325 -27175245 + MSTA-int LTR MaLR 393 1580 0 1863 157 152 11 chr21 17732325 17732700 -27174870 + MSTA LTR MaLR 1 428 0 1436 184 92 3 chr21 17733981 17734297 -27173273 + MER2 DNA MER2_type 1 344 0 276 273 66 16 chr21 17734523 17734644 -27172926 + MIR SINE MIR 78 204 -58 34 55 0 0 chr21 17734714 17734769 -27172801 + AT_rich Low_complexity Low_complexity 1 55 0 326 398 59 0 chr21 17735605 17735723 -27171847 - L2 LINE L2 0 3272 3148 2472 59 3 0 chr21 17735870 17736175 -27171395 - AluY SINE Alu -5 306 1 280 361 105 21 chr21 17736241 17736432 -27171138 - MIR SINE MIR -8 254 48 2054 203 3 0 chr21 17736432 17736821 -27170749 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr21 17737356 17737380 -27170190 + AT_rich Low_complexity Low_complexity 1 24 0 1091 145 0 0 chr21 17737461 17737627 -27169943 - AluSp SINE Alu -11 302 137 2163 175 58 17 chr21 17739581 17739992 -27167578 + MSTA LTR MaLR 1 428 0 324 294 82 18 chr21 17741131 17741301 -27166269 - L1ME LINE L1 -419 5702 5522 349 345 23 11 chr21 17741585 17741759 -27165811 + MIR SINE MIR 76 251 -11 32 43 0 0 chr21 17741911 17741957 -27165613 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 17742125 17742147 -27165423 + AT_rich Low_complexity Low_complexity 1 22 0 30015 126 8 55 chr21 17742245 17748693 -27158877 + L1PA7 LINE L1 12 6151 -3 371 315 94 74 chr21 17748722 17749001 -27158569 - MLT1L LTR MaLR -79 536 245 2778 13 0 0 chr21 17749001 17749308 -27158262 - AluYb8 SINE Alu -11 307 1 371 315 94 74 chr21 17749308 17749434 -27158136 - MLT1L LTR MaLR -370 245 123 257 318 0 0 chr21 17749624 17749687 -27157883 - MIR SINE MIR -152 110 48 350 254 90 0 chr21 17751449 17751571 -27155999 - L1ME3A LINE L1 -4 6166 6034 2028 293 33 5 chr21 17751588 17752188 -27155382 - MLT2F LTR ERVL -44 619 3 365 219 14 0 chr21 17752202 17752275 -27155295 - MER70B LTR ERVL -502 76 3 299 318 40 8 chr21 17752278 17752404 -27155166 - L1ME LINE L1 -707 5455 5326 31 92 0 0 chr21 17752728 17752815 -27154755 + AT_rich Low_complexity Low_complexity 1 87 0 2617 231 58 67 chr21 17754319 17755189 -27152381 - MER21B LTR ERV1 -1 862 1 866 175 30 98 chr21 17756387 17756621 -27150949 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 17756684 17756712 -27150858 + AT_rich Low_complexity Low_complexity 1 28 0 879 291 91 28 chr21 17756740 17757527 -27150043 + L1MEc LINE L1 1967 2767 -3448 1637 212 3 0 chr21 17758001 17758307 -27149263 + AluJb SINE Alu 1 307 -5 23 78 0 0 chr21 17758364 17758415 -27149155 + AT_rich Low_complexity Low_complexity 1 51 0 330 322 7 34 chr21 17759215 17759364 -27148206 - MIR3 SINE MIR -4 204 60 2045 132 3 0 chr21 17760530 17760825 -27146745 + AluSg SINE Alu 1 296 -14 2068 169 9 0 chr21 17761941 17762285 -27145285 - MER7A DNA MER2_type 0 346 2 269 292 77 24 chr21 17763208 17763379 -27144191 + MIR SINE MIR 10 189 -62 186 43 0 0 chr21 17763553 17763576 -27143994 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 2061 100 7 0 chr21 17763576 17763855 -27143715 - AluSq SINE Alu -32 281 1 24 32 0 0 chr21 17764068 17764099 -27143471 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr21 17765137 17765157 -27142413 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 11144 188 24 27 chr21 17765670 17769305 -27138265 + L1PA15 LINE L1 2544 6163 -2 455 247 60 48 chr21 17769765 17769931 -27137639 + HAL1b LINE L1 392 559 -789 439 277 13 26 chr21 17770049 17770204 -27137366 - MLT1E LTR MaLR -2 591 439 956 163 121 0 chr21 17770207 17770397 -27137173 + MER46B DNA MER2_type 3 90 -146 21 36 0 0 chr21 17772789 17772817 -27134753 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 17774725 17774755 -27132815 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 17774819 17774843 -27132727 + AT_rich Low_complexity Low_complexity 1 24 0 1465 192 33 59 chr21 17775273 17775316 -27132254 - MLT1B LTR MaLR 0 390 347 1952 160 33 30 chr21 17775316 17775679 -27131891 - THE1B LTR MaLR 0 364 1 1465 192 33 59 chr21 17775679 17776025 -27131545 - MLT1B LTR MaLR -43 347 11 1492 212 24 17 chr21 17776052 17776340 -27131230 + AluJo SINE Alu 3 292 -20 1060 207 66 77 chr21 17776693 17777070 -27130500 + MER93b LTR ERV1 1 373 0 2304 55 7 35 chr21 17777292 17777602 -27129968 + AluY SINE Alu 1 301 -10 1261 175 30 26 chr21 17777733 17778001 -27129569 - AluSx SINE Alu -4 308 40 288 130 0 0 chr21 17779262 17779308 -27128262 + (TA)n Simple_repeat Simple_repeat 2 47 0 1677 221 114 9 chr21 17779438 17779895 -27127675 + MLT1D LTR MaLR 1 505 0 275 49 24 0 chr21 17779967 17780008 -27127562 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 40 0 0 chr21 17780007 17780032 -27127538 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1695 175 57 14 chr21 17780116 17780465 -27127105 - THE1B LTR MaLR 0 364 1 249 309 51 83 chr21 17781068 17781285 -27126285 + L2 LINE L2 3103 3312 -1 21 36 0 0 chr21 17781316 17781344 -27126226 + AT_rich Low_complexity Low_complexity 1 28 0 580 160 50 25 chr21 17781620 17781739 -27125831 + MER34 LTR ERV1 24 145 -397 23 0 0 0 chr21 17781832 17781855 -27125715 + AT_rich Low_complexity Low_complexity 1 23 0 2338 278 86 44 chr21 17781896 17782308 -27125262 + L1ME1 LINE L1 131 524 -5872 1393 246 86 44 chr21 17782308 17782807 -27124763 - MLT2B1 LTR ERVL 0 520 1 2338 278 86 44 chr21 17782807 17783699 -27123871 + L1ME1 LINE L1 524 1489 -4907 1941 241 81 52 chr21 17783728 17784677 -27122893 + L1ME1 LINE L1 4684 5689 -546 2332 61 0 48 chr21 17784677 17784988 -27122582 - AluY SINE Alu -15 296 1 1941 241 81 52 chr21 17784988 17785546 -27122024 + L1ME1 LINE L1 5689 6230 -5 1518 139 79 60 chr21 17787077 17787445 -27120125 - THE1C LTR MaLR 0 375 1 520 296 90 29 chr21 17787655 17788079 -27119491 + MLT1G3 LTR MaLR 24 530 0 242 292 65 26 chr21 17788252 17788406 -27119164 + MLT1G3-int LTR MaLR 313 472 -899 3170 121 26 12 chr21 17789042 17789546 -27118024 + MER9 LTR ERVK 1 511 0 21 36 0 0 chr21 17790248 17790276 -27117294 + AT_rich Low_complexity Low_complexity 1 28 0 458 303 84 32 chr21 17790292 17790559 -27117011 + MLT1G LTR MaLR 3 255 -335 441 0 0 0 chr21 17790559 17790608 -27116962 + (GA)n Simple_repeat Simple_repeat 2 50 0 458 303 84 32 chr21 17790608 17790798 -27116772 + MLT1G LTR MaLR 255 580 -10 1320 206 150 3 chr21 17791005 17791345 -27116225 + MLT1B LTR MaLR 1 390 0 239 214 29 0 chr21 17791539 17791609 -27115961 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 255 79 0 0 chr21 17791610 17791648 -27115922 + (TG)n Simple_repeat Simple_repeat 1 38 0 1980 115 0 43 chr21 17792187 17792492 -27115078 + AluSq SINE Alu 1 292 -21 22 80 0 0 chr21 17793082 17793132 -27114438 + AT_rich Low_complexity Low_complexity 1 50 0 201 122 49 0 chr21 17793944 17793985 -27113585 + (TTA)n Simple_repeat Simple_repeat 2 44 0 235 205 27 18 chr21 17794260 17794372 -27113198 + (TA)n Simple_repeat Simple_repeat 1 113 0 201 184 18 35 chr21 17794394 17794508 -27113062 + (TA)n Simple_repeat Simple_repeat 1 112 0 2312 142 13 8 chr21 17794510 17794883 -27112687 - THE1C LTR MaLR 0 375 1 8779 142 59 7 chr21 17794883 17796384 -27111186 - THE1C-int LTR MaLR 0 1580 1 1924 161 13 3 chr21 17796427 17796732 -27110838 + AluSx SINE Alu 3 310 -2 1920 143 90 18 chr21 17796756 17797091 -27110479 - THE1B LTR MaLR 0 364 6 10949 112 4 3 chr21 17797096 17798673 -27108897 - THE1B-int LTR MaLR -1 1579 1 1884 121 81 29 chr21 17798673 17799019 -27108551 - THE1B LTR MaLR 0 364 1 2329 133 0 0 chr21 17799019 17799350 -27108220 - THE1C LTR MaLR -44 331 1 2401 75 0 0 chr21 17800723 17801018 -27106552 + AluY SINE Alu 1 295 -16 35 0 0 0 chr21 17801018 17801053 -27106517 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr21 17802234 17802262 -27105308 + AT_rich Low_complexity Low_complexity 1 28 0 1770 182 0 3 chr21 17803105 17803396 -27104174 + AluJb SINE Alu 1 290 -22 24 67 0 0 chr21 17803449 17803494 -27104076 + AT_rich Low_complexity Low_complexity 1 45 0 217 333 0 0 chr21 17803542 17803602 -27103968 + L2 LINE L2 3205 3264 -8 24 0 0 0 chr21 17803975 17803999 -27103571 + AT_rich Low_complexity Low_complexity 1 24 0 257 51 26 0 chr21 17804559 17804598 -27102972 + (TG)n Simple_repeat Simple_repeat 2 41 0 348 247 90 79 chr21 17805720 17805999 -27101571 - LTR50 LTR ERVL -484 311 30 1352 199 49 120 chr21 17806097 17806705 -27100865 - MER34B LTR ERV1 0 565 1 405 0 0 0 chr21 17807263 17807308 -27100262 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr21 17807865 17807900 -27099670 + AT_rich Low_complexity Low_complexity 1 35 0 484 238 12 62 chr21 17808781 17809015 -27098555 + MER58 DNA MER1_type 1 2420 0 362 273 68 40 chr21 17809015 17809191 -27098379 + HERV16 LTR ERVL 764 944 -4052 1573 210 12 119 chr21 17809233 17809794 -27097776 - MLT1D LTR MaLR -4 501 1 277 304 78 9 chr21 17809794 17809909 -27097661 - MERVL LTR ERVL -2529 2956 2834 2702 151 40 17 chr21 17810022 17810565 -27097005 + LTR38 LTR ERV1 1 556 0 473 292 43 27 chr21 17811114 17811299 -27096271 + L1ME LINE L1 646 833 -5563 259 312 53 53 chr21 17811425 17811726 -27095844 + L1ME LINE L1 779 1079 -5330 4987 120 25 38 chr21 17811808 17813197 -27094373 + pTR5 LTR ERV1 742 2606 0 968 348 65 48 chr21 17813520 17813669 -27093901 - MER115 DNA AcHobo -2 691 546 2093 230 77 2 chr21 17813669 17814108 -27093462 + MER70A LTR ERVL 1 472 0 968 348 65 48 chr21 17814108 17814547 -27093023 - MER115 DNA AcHobo -147 546 93 188 339 0 0 chr21 17815049 17815105 -27092465 + L2 LINE L2 3217 3272 0 26 30 0 0 chr21 17815179 17815212 -27092358 + AT_rich Low_complexity Low_complexity 1 33 0 282 171 0 0 chr21 17815692 17815733 -27091837 + AluJ/FRAM SINE Alu 228 268 -34 240 111 0 0 chr21 17815868 17815904 -27091666 + (A)n Simple_repeat Simple_repeat 1 36 0 40 73 0 0 chr21 17816516 17816598 -27090972 + AT_rich Low_complexity Low_complexity 1 82 0 540 207 6 77 chr21 17816712 17816835 -27090735 + L1MB8 LINE L1 6021 6130 -48 3288 164 2 22 chr21 17816835 17817372 -27090198 + MER1A DNA MER1_type 1 526 -1 540 207 6 77 chr21 17817372 17817417 -27090153 + L1MB8 LINE L1 6130 6177 -1 26 30 0 0 chr21 17817484 17817517 -27090053 + AT_rich Low_complexity Low_complexity 1 33 0 231 132 26 0 chr21 17817782 17817820 -27089750 - LTR33A LTR ERVL 0 523 485 * 1067 233 124 73 chr21 17817789 17818471 -27089099 - LTR41 LTR ERVL -6 767 12 521 335 21 46 chr21 17819046 17819330 -27088240 + LTR16A LTR ERVL 57 333 -117 2337 145 49 5 chr21 17819330 17819738 -27087832 - MSTA LTR MaLR 0 428 3 192 152 0 0 chr21 17819874 17819907 -27087663 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr21 17820294 17820315 -27087255 + AT_rich Low_complexity Low_complexity 1 21 0 12619 229 45 32 chr21 17820630 17823228 -27084342 - L1MA4 LINE L1 -19 7302 4738 423 0 0 0 chr21 17823228 17823275 -27084295 + (TG)n Simple_repeat Simple_repeat 2 48 0 12619 229 45 32 chr21 17823275 17825755 -27081815 - L1MA4 LINE L1 -2583 4738 2219 189 0 0 0 chr21 17825755 17825776 -27081794 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 12619 229 45 32 chr21 17825776 17827714 -27079856 - L1MA4 LINE L1 -5102 2219 307 4200 186 27 30 chr21 17827910 17828823 -27078747 + L1MC1 LINE L1 5406 6316 -17 1670 158 100 0 chr21 17829052 17829331 -27078239 + AluSx SINE Alu 1 307 -5 249 267 60 127 chr21 17829390 17829540 -27078030 + MIR3 SINE MIR 39 178 -30 729 162 7 7 chr21 17829841 17829983 -27077587 + L1MA10 LINE L1 6191 6332 -2 2221 112 0 3 chr21 17829991 17830287 -27077283 + AluSx SINE Alu 1 295 -17 431 357 31 11 chr21 17830852 17831208 -27076362 + L1PA15 LINE L1 10 372 -7209 3632 197 22 11 chr21 17832522 17833348 -27074222 + L1PA15 LINE L1 2321 3163 -4421 5301 190 8 7 chr21 17833354 17835001 -27072569 + L1PA15 LINE L1 5693 7340 -263 1399 179 0 8 chr21 17835168 17835425 -27072145 + L1PA15 LINE L1 7344 7598 -5 234 0 0 0 chr21 17837337 17837363 -27070207 + (GA)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr21 17838610 17838698 -27068872 + AT_rich Low_complexity Low_complexity 1 88 0 1582 190 7 23 chr21 17839010 17839315 -27068255 - AluJo SINE Alu -12 300 1 1944 188 11 0 chr21 17839435 17839796 -27067774 - MER47A DNA MER2_type 0 366 2 1898 249 69 27 chr21 17840011 17840574 -27066996 - MLT1E LTR MaLR 0 593 7 534 297 91 96 chr21 17842582 17842882 -27064688 - L2 LINE L2 -7 3306 3007 2288 113 0 0 chr21 17842882 17843191 -27064379 + AluSg SINE Alu 1 309 -1 534 297 91 96 chr21 17843191 17843307 -27064263 - L2 LINE L2 -306 3007 2892 1668 210 83 5 chr21 17843397 17843783 -27063787 + MSTB1 LTR MaLR 17 432 0 380 332 88 0 chr21 17843783 17843976 -27063594 - L2 LINE L2 -426 2888 2679 21 0 0 0 chr21 17844883 17844904 -27062666 + AT_rich Low_complexity Low_complexity 1 21 0 4585 157 48 62 chr21 17845196 17846215 -27061355 - L1MC1 LINE L1 0 6333 5329 726 270 13 17 chr21 17846217 17846450 -27061120 - L1MC1 LINE L1 -864 5282 5051 25 31 0 0 chr21 17846488 17846520 -27061050 + AT_rich Low_complexity Low_complexity 1 32 0 2032 119 0 3 chr21 17849734 17850019 -27057551 + AluSg SINE Alu 13 296 -14 842 266 16 4 chr21 17850446 17850698 -27056872 + L1MA9 LINE L1 6020 6274 -38 36 23 0 0 chr21 17851086 17851129 -27056441 + AT_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr21 17851197 17851228 -27056342 + AT_rich Low_complexity Low_complexity 1 31 0 294 29 0 0 chr21 17851486 17851521 -27056049 + (CA)n Simple_repeat Simple_repeat 2 36 0 2403 43 0 0 chr21 17851550 17851855 -27055715 + AluY SINE Alu 1 305 0 22 56 0 0 chr21 17852063 17852099 -27055471 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr21 17852159 17852182 -27055388 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr21 17852415 17852479 -27055091 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr21 17852652 17852684 -27054886 + AT_rich Low_complexity Low_complexity 1 32 0 244 217 0 14 chr21 17852986 17853055 -27054515 + A-rich Low_complexity Low_complexity 2 69 0 227 163 0 0 chr21 17853171 17853214 -27054356 - LTR66 LTR ERVL -171 439 397 276 299 119 34 chr21 17853606 17853783 -27053787 - MIR SINE MIR -52 210 19 1540 179 81 17 chr21 17853801 17854160 -27053410 + MLT1B LTR MaLR 1 423 -5 4000 47 0 6 chr21 17854236 17854745 -27052825 - L1PA5 LINE L1 -5 6149 5644 1877 59 0 0 chr21 17855344 17855581 -27051989 - L1PA5 LINE L1 -2 6152 5916 28 48 0 0 chr21 17857152 17857194 -27050376 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr21 17857461 17857504 -27050066 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr21 17858014 17858038 -27049532 + AT_rich Low_complexity Low_complexity 1 24 0 1906 121 28 0 chr21 17858275 17858565 -27049005 + L1PA11 LINE L1 5877 6174 0 1196 241 168 29 chr21 17858574 17859180 -27048390 + LTR50 LTR ERVL 3 795 0 254 299 109 40 chr21 17859464 17859638 -27047932 + L2 LINE L2 3128 3313 0 692 141 118 24 chr21 17859680 17859850 -27047720 + MER53 DNA DNA 4 189 0 1603 148 48 9 chr21 17860537 17861078 -27046492 - LTR24C LTR ERV1 0 635 1 880 247 29 97 chr21 17861192 17861400 -27046170 - L2 LINE L2 -858 2456 2235 2324 134 16 6 chr21 17861400 17861765 -27045805 + MER83C LTR ERV1 1 369 -4 880 247 29 97 chr21 17861765 17861919 -27045651 - L2 LINE L2 -1079 2235 2123 2322 85 0 0 chr21 17861919 17862212 -27045358 - AluY SINE Alu -18 293 1 880 247 29 97 chr21 17862212 17862261 -27045309 - L2 LINE L2 -1191 2123 2072 1780 238 75 35 chr21 17862261 17862355 -27045215 + MER21B LTR ERV1 1 90 -773 225 23 23 45 chr21 17862355 17862399 -27045171 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1780 238 75 35 chr21 17862399 17862784 -27044786 + MER21B LTR ERV1 90 499 -364 882 202 40 56 chr21 17862785 17862807 -27044763 - L1MD3 LINE L1 -201 7794 7773 3935 84 55 9 chr21 17862807 17863388 -27044182 + LTR14B LTR ERVK 1 608 0 882 202 40 56 chr21 17863388 17863617 -27043953 - L1MD3 LINE L1 -222 7773 7547 857 195 116 5 chr21 17863664 17863854 -27043716 + LTR49 LTR ERV1 3 213 -382 988 162 11 47 chr21 17863854 17864045 -27043525 - THE1B LTR MaLR 0 364 181 357 158 59 50 chr21 17864093 17864194 -27043376 - LTR48 LTR ERV1 -56 731 630 1173 190 47 43 chr21 17864207 17864486 -27043084 - AluJo SINE Alu -10 302 23 1087 165 53 138 chr21 17864511 17864887 -27042683 - LTR49 LTR ERV1 -251 344 1 766 240 63 45 chr21 17864890 17865111 -27042459 + MER21A LTR ERV1 621 845 -86 1477 195 75 21 chr21 17865218 17865362 -27042208 - LTR49 LTR ERV1 -241 354 219 2291 133 8 22 chr21 17865362 17865731 -27041839 + THE1B LTR MaLR 1 364 0 1477 195 75 21 chr21 17865731 17865920 -27041650 - LTR49 LTR ERV1 -376 219 3 955 195 35 22 chr21 17865964 17866262 -27041308 + L1MC3 LINE L1 7375 7808 -154 1839 179 27 42 chr21 17866287 17866689 -27040881 + MER57A LTR ERV1 8 403 0 198 0 0 0 chr21 17867568 17867590 -27039980 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 288 0 0 0 chr21 17867589 17867621 -27039949 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr21 17868549 17868573 -27038997 + AT_rich Low_complexity Low_complexity 1 24 0 461 61 0 15 chr21 17869488 17869554 -27038016 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 2232 192 72 82 chr21 17869839 17870533 -27037037 + LTR8 LTR ERV1 4 690 -1 25 0 0 0 chr21 17870756 17870781 -27036789 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr21 17871659 17871686 -27035884 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 30 0 0 chr21 17873760 17873793 -27033777 + AT_rich Low_complexity Low_complexity 1 33 0 2976 119 26 2 chr21 17874030 17874484 -27033086 - MER4C LTR ERV1 0 465 1 503 247 91 70 chr21 17874546 17874881 -27032689 - LTR48B LTR ERV1 -13 774 447 2399 108 5 24 chr21 17874881 17875252 -27032318 - THE1B LTR MaLR 0 364 1 503 247 91 70 chr21 17875252 17875439 -27032131 - LTR48B LTR ERV1 -340 447 1 1498 228 82 41 chr21 17875520 17876011 -27031559 - MER67D LTR ERV1 -2 512 2 1997 137 0 0 chr21 17876570 17876876 -27030694 - AluSx SINE Alu 0 306 1 1881 266 67 29 chr21 17876879 17877999 -27029571 - L1MEc LINE L1 -3327 2888 1765 1707 285 152 22 chr21 17878052 17879306 -27028264 - L1MEc LINE L1 -4920 1476 60 517 271 0 71 chr21 17879627 17879688 -27027882 + MIR SINE MIR 72 136 -126 2416 56 0 3 chr21 17879688 17879994 -27027576 - AluY SINE Alu -6 305 1 517 271 0 71 chr21 17879994 17880102 -27027468 + MIR SINE MIR 136 229 -33 27 0 0 0 chr21 17881334 17881361 -27026209 + AT_rich Low_complexity Low_complexity 1 27 0 1417 176 44 54 chr21 17881730 17882026 -27025544 - AluJo SINE Alu -17 295 3 362 226 39 20 chr21 17882067 17882169 -27025401 + L1ME1 LINE L1 6060 6163 -3 201 108 0 0 chr21 17882200 17882237 -27025333 + (CAT)n Simple_repeat Simple_repeat 1 37 0 315 174 64 151 chr21 17882247 17882419 -27025151 + L1MC5 LINE L1 7779 7935 -26 186 43 0 0 chr21 17882421 17882444 -27025126 + (CA)n Simple_repeat Simple_repeat 2 24 0 521 305 49 25 chr21 17882688 17882891 -27024679 + MIR SINE MIR 1 208 -54 256 271 0 0 chr21 17884399 17884458 -27023112 + MIR3 SINE MIR 120 178 -30 1009 325 29 16 chr21 17885016 17885401 -27022169 + REP3 LTR ERV 1 390 -172 22 35 0 0 chr21 17885446 17885475 -27022095 + AT_rich Low_complexity Low_complexity 1 29 0 1442 239 35 21 chr21 17885743 17886120 -27021450 - MER70A LTR ERVL -14 458 77 257 192 45 13 chr21 17886120 17886354 -27021216 + (TA)n Simple_repeat Simple_repeat 1 241 0 1755 190 81 0 chr21 17886572 17886904 -27020666 + MLT1A1 LTR MaLR 7 365 0 1619 311 43 19 chr21 17886948 17886998 -27020572 + L1ME1 LINE L1 204 251 -6145 1877 175 67 3 chr21 17886998 17887370 -27020200 - MSTD LTR MaLR 0 396 1 1619 311 43 19 chr21 17887370 17887997 -27019573 + L1ME1 LINE L1 251 897 -5499 444 274 156 11 chr21 17888187 17888545 -27019025 + L1ME1 LINE L1 954 1363 -5033 * 1497 275 58 52 chr21 17888542 17889312 -27018258 + L1ME1 LINE L1 5364 6138 -97 409 217 12 0 chr21 17890237 17890320 -27017250 - MIR SINE MIR -78 184 101 2625 180 25 65 chr21 17890384 17890798 -27016772 - MER6A DNA MER2_type -260 605 223 414 0 0 0 chr21 17890798 17890844 -27016726 + (CA)n Simple_repeat Simple_repeat 1 46 0 2625 180 25 65 chr21 17890844 17891057 -27016513 - MER6A DNA MER2_type -642 223 3 2318 54 0 35 chr21 17892488 17892803 -27014767 - AluY SINE Alu -7 304 1 464 282 30 0 chr21 17893049 17893180 -27014390 + MIR3 SINE MIR 69 203 -5 213 196 0 0 chr21 17896264 17896310 -27011260 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 239 0 30 chr21 17896705 17896772 -27010798 - L2 LINE L2 -4 3309 3245 1339 197 47 3 chr21 17897111 17897431 -27010139 - Ricksha DNA DNA -7 3239 2906 2114 118 0 16 chr21 17897433 17897748 -27009822 + AluSq SINE Alu 1 310 -3 207 119 95 0 chr21 17897748 17897790 -27009780 + GA-rich Low_complexity Low_complexity 1 46 0 5854 175 28 6 chr21 17897790 17897826 -27009744 - Ricksha DNA DNA -313 2933 2899 204 67 0 0 chr21 17897826 17897856 -27009714 + (TA)n Simple_repeat Simple_repeat 1 30 0 5854 175 28 6 chr21 17897856 17898909 -27008661 - Ricksha DNA DNA -347 2899 1821 1464 174 7 62 chr21 17898907 17899211 -27008359 - Ricksha DNA DNA -2957 289 3 * 365 287 105 53 chr21 17899217 17899597 -27007973 - L1M4 LINE L1 -3097 3049 2650 21 36 0 0 chr21 17901385 17901413 -27006157 + AT_rich Low_complexity Low_complexity 1 28 0 349 288 42 26 chr21 17901568 17901721 -27005849 + MLT1E LTR MaLR 25 182 -385 562 319 45 24 chr21 17902128 17902420 -27005150 + ERVL LTR ERVL 2071 2368 -3396 4787 224 68 27 chr21 17902482 17902625 -27004945 - L1MC1 LINE L1 -25 6588 6452 1516 175 38 24 chr21 17902625 17902916 -27004654 + AluJo SINE Alu 2 296 -16 4787 224 68 27 chr21 17902916 17904869 -27002701 - L1MC1 LINE L1 -161 6452 4369 2274 105 0 0 chr21 17904869 17905174 -27002396 + AluY SINE Alu 1 305 -6 4787 224 68 27 chr21 17905174 17905639 -27001931 - L1MC1 LINE L1 -2244 4369 3924 591 251 44 4 chr21 17905733 17905960 -27001610 - L1MC1 LINE L1 -2872 3554 3319 1570 180 27 88 chr21 17905967 17906511 -27001059 + MLT2A2 LTR ERVL 27 554 0 2875 229 31 25 chr21 17906516 17907443 -27000127 - L1MC1 LINE L1 -3106 3320 2384 2126 113 0 3 chr21 17907443 17907735 -26999835 - AluSg SINE Alu -19 291 1 2875 229 31 25 chr21 17907735 17907887 -26999683 - L1MC1 LINE L1 -4042 2384 2234 1008 318 43 10 chr21 17907931 17908346 -26999224 + L2 LINE L2 1924 2352 -962 2569 185 111 32 chr21 17908379 17909001 -26998569 + LTR51 LTR ERV1 1 671 0 2236 99 0 0 chr21 17910091 17910393 -26997177 - AluSg SINE Alu -8 302 1 618 173 30 81 chr21 17910893 17911090 -26996480 + MER53 DNA DNA 2 188 -1 22 35 0 0 chr21 17913448 17913477 -26994093 + AT_rich Low_complexity Low_complexity 1 29 0 1874 160 0 0 chr21 17913715 17914062 -26993508 + AluSx SINE Alu 1 347 0 190 281 18 35 chr21 17914078 17914135 -26993435 - MIR SINE MIR -116 146 91 1688 217 17 8 chr21 17914314 17914674 -26992896 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chr21 17914911 17914934 -26992636 + AT_rich Low_complexity Low_complexity 1 23 0 1226 184 0 8 chr21 17915605 17915866 -26991704 + L1MA4 LINE L1 6038 6296 -4 318 226 84 63 chr21 17915919 17916109 -26991461 - Charlie7 DNA MER1_type -1 2611 2418 308 24 24 0 chr21 17916280 17916321 -26991249 + (TG)n Simple_repeat Simple_repeat 1 42 0 356 279 36 0 chr21 17916335 17916446 -26991124 - Charlie7 DNA MER1_type -556 2056 1942 21 71 0 0 chr21 17917228 17917270 -26990300 + AT_rich Low_complexity Low_complexity 1 42 0 2184 120 0 0 chr21 17917279 17917579 -26989991 + AluSq SINE Alu 1 300 -13 696 163 0 31 chr21 17917581 17917710 -26989860 - L1PB4 LINE L1 -17 6139 6015 22 88 0 0 chr21 17918044 17918101 -26989469 + AT_rich Low_complexity Low_complexity 1 57 0 1862 155 0 3 chr21 17918221 17918517 -26989053 - AluSx SINE Alu -17 295 1 27 29 0 0 chr21 17918735 17918769 -26988801 + AT_rich Low_complexity Low_complexity 1 34 0 1933 147 16 3 chr21 17918868 17919182 -26988388 - MER57A LTR ERV1 -85 318 1 16125 148 51 75 chr21 17919182 17921111 -26986459 - MER57A-int LTR ERV1 0 7537 5563 1865 128 4 0 chr21 17921111 17921384 -26986186 + AluSc SINE Alu 1 274 -35 16125 148 51 75 chr21 17921384 17923305 -26984265 - MER57A-int LTR ERV1 -1974 5563 1709 414 236 43 25 chr21 17923739 17923933 -26983637 - MER57A-int LTR ERV1 -3681 1190 1096 381 211 0 0 chr21 17924108 17924184 -26983386 - MER34C LTR ERV1 -355 230 155 4516 168 16 34 chr21 17924456 17925312 -26982258 - MER57A-int LTR ERV1 -6696 841 1 2218 161 20 5 chr21 17925312 17925709 -26981861 - MER57A LTR ERV1 0 403 1 647 222 106 55 chr21 17925726 17926154 -26981416 - MER69 DNA AcHobo -82 2444 2012 * 738 250 76 51 chr21 17926151 17926467 -26981103 - MER69 DNA AcHobo -1953 573 250 680 273 64 69 chr21 17926467 17926915 -26980655 - MER57A LTR ERV1 0 556 138 287 217 0 0 chr21 17927046 17927106 -26980464 - MLT2C1 LTR ERVL 0 520 461 22 94 0 0 chr21 17927167 17927231 -26980339 + AT_rich Low_complexity Low_complexity 1 64 0 275 269 25 8 chr21 17927284 17927403 -26980167 + (TA)n Simple_repeat Simple_repeat 2 122 0 1591 196 51 0 chr21 17927407 17927723 -26979847 - MLT2C1 LTR ERVL -57 340 9 547 241 18 0 chr21 17929298 17929450 -26978120 + L1MB5 LINE L1 5835 5995 -189 390 204 28 0 chr21 17929453 17929553 -26978017 + L1MB7 LINE L1 5877 5985 -189 357 275 12 66 chr21 17929587 17929754 -26977816 - MLT1I LTR MaLR -239 170 13 24 0 0 0 chr21 17929818 17929842 -26977728 + AT_rich Low_complexity Low_complexity 1 24 0 330 311 124 35 chr21 17930498 17930836 -26976734 - LTR33 LTR ERVL -146 375 8 1459 174 36 60 chr21 17930872 17931256 -26976314 + THE1C LTR MaLR 1 375 0 2064 134 0 0 chr21 17931287 17931579 -26975991 - AluSg SINE Alu -3 307 16 282 340 30 65 chr21 17932298 17932530 -26975040 + MLT1J2 LTR MaLR 223 446 -4 22 0 0 0 chr21 17932640 17932662 -26974908 + AT_rich Low_complexity Low_complexity 1 22 0 243 250 33 0 chr21 17932692 17932752 -26974818 - L1ME3 LINE L1 -24 6138 6077 345 230 63 75 chr21 17932752 17932926 -26974644 - L1ME LINE L1 -5138 932 761 184 68 23 45 chr21 17933064 17933108 -26974462 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 344 383 120 7 chr21 17934327 17934635 -26972935 + L2 LINE L2 2804 3146 -167 1430 181 10 111 chr21 17934866 17935270 -26972300 + MLT1A1 LTR MaLR 1 363 -2 306 323 84 72 chr21 17937917 17938347 -26969223 - L2 LINE L2 -1160 2154 1720 315 336 8 8 chr21 17938960 17939079 -26968491 + MLT1E2 LTR MaLR 213 331 -295 1803 225 131 31 chr21 17940071 17940590 -26966980 + MLT1E2 LTR MaLR 52 622 -4 2009 143 0 0 chr21 17940922 17941216 -26966354 + AluSx SINE Alu 1 294 -18 328 307 24 24 chr21 17941353 17941480 -26966090 + MLT1H LTR MaLR 136 262 -287 31 0 0 0 chr21 17941733 17941764 -26965806 + AT_rich Low_complexity Low_complexity 1 31 0 2114 183 10 0 chr21 17941794 17942192 -26965378 + MER57A LTR ERV1 2 403 0 21 89 0 0 chr21 17942919 17942975 -26964595 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr21 17943007 17943036 -26964534 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 17943256 17943285 -26964285 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 17943525 17943548 -26964022 + AT_rich Low_complexity Low_complexity 1 23 0 1204 183 87 68 chr21 17943754 17944121 -26963449 - MLT1A2 LTR MaLR 0 374 1 21 89 0 0 chr21 17944499 17944555 -26963015 + AT_rich Low_complexity Low_complexity 1 56 0 1719 150 36 65 chr21 17945896 17946210 -26961360 + THE1C LTR MaLR 1 304 -71 2272 102 0 19 chr21 17946210 17946524 -26961046 + AluY SINE Alu 1 308 -3 1719 150 36 65 chr21 17946524 17946595 -26960975 + THE1C LTR MaLR 304 375 0 9218 148 30 18 chr21 17946595 17948141 -26959429 + THE1C-int LTR MaLR 15 1579 -1 1764 170 52 25 chr21 17948141 17948506 -26959064 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 17948843 17948864 -26958706 + AT_rich Low_complexity Low_complexity 1 21 0 218 339 16 41 chr21 17948919 17949040 -26958530 - L2 LINE L2 -541 2773 2656 342 138 0 0 chr21 17949044 17949102 -26958468 + (TG)n Simple_repeat Simple_repeat 1 58 0 1231 254 139 29 chr21 17949282 17949770 -26957800 - MLT1E2 LTR MaLR -78 548 7 360 0 0 0 chr21 17950454 17950494 -26957076 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2002 142 0 0 chr21 17950497 17950779 -26956791 - AluSq SINE Alu -31 282 1 1534 246 55 10 chr21 17950910 17951313 -26956257 + L1PB1 LINE L1 14 434 -7131 * 6306 196 25 8 chr21 17951311 17953767 -26953803 + L1PB1 LINE L1 4722 7210 -360 276 213 0 0 chr21 17953767 17953828 -26953742 + (TA)n Simple_repeat Simple_repeat 2 62 0 2404 121 11 3 chr21 17953828 17954201 -26953369 + L1PB1 LINE L1 7195 7570 0 1161 169 42 4 chr21 17954287 17954639 -26952931 + L1M1 LINE L1 5101 5462 -743 1378 126 35 0 chr21 17954642 17954872 -26952698 + L1MA2 LINE L1 6056 6293 -11 21 57 0 0 chr21 17955221 17955256 -26952314 + AT_rich Low_complexity Low_complexity 1 35 0 254 304 20 0 chr21 17955428 17955530 -26952040 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 21 0 0 0 chr21 17955783 17955804 -26951766 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr21 17957508 17957540 -26950030 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 17957746 17957785 -26949785 + AT_rich Low_complexity Low_complexity 1 39 0 53 57 0 0 chr21 17957984 17958072 -26949498 + AT_rich Low_complexity Low_complexity 1 88 0 223 310 190 7 chr21 17958205 17958347 -26949223 - MIR3 SINE MIR 0 208 41 351 119 0 0 chr21 17958429 17958496 -26949074 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1323 232 0 7 chr21 17958496 17958780 -26948790 - AluJo SINE Alu -25 287 6 999 273 103 64 chr21 17959086 17959147 -26948423 - MLT1F1 LTR MaLR 0 567 510 2050 32 4 0 chr21 17959147 17959397 -26948173 - L1PA7 LINE L1 -18 6136 5886 999 273 103 64 chr21 17959397 17959872 -26947698 - MLT1F1 LTR MaLR -57 510 10 2255 134 11 6 chr21 17960694 17961045 -26946525 + THE1C LTR MaLR 3 355 -20 2406 63 0 3 chr21 17961099 17961402 -26946168 - AluY SINE Alu -9 302 1 288 277 64 21 chr21 17961758 17961899 -26945671 - L1ME4a LINE L1 0 6121 5975 360 206 37 37 chr21 17962236 17962343 -26945227 - MLT1E2 LTR MaLR -1 625 519 258 271 0 0 chr21 17962556 17962615 -26944955 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 30 89 0 0 chr21 17962930 17963009 -26944561 + AT_rich Low_complexity Low_complexity 1 79 0 330 303 48 48 chr21 17963168 17963333 -26944237 - MIR3 SINE MIR -36 172 8 199 360 88 8 chr21 17963986 17964111 -26943459 - L2 LINE L2 -498 2816 2682 21 0 0 0 chr21 17964627 17964648 -26942922 + AT_rich Low_complexity Low_complexity 1 21 0 1095 225 26 1 chr21 17965594 17965863 -26941707 - MLT1D LTR MaLR -2 503 245 805 219 31 53 chr21 17965880 17966186 -26941384 + MLT2B1 LTR ERVL 79 479 -41 284 127 63 16 chr21 17966189 17966315 -26941255 + (TA)n Simple_repeat Simple_repeat 2 133 0 373 223 22 82 chr21 17966441 17966625 -26940945 - L1MC4 LINE L1 -131 7911 7739 225 295 105 18 chr21 17966645 17966930 -26940640 - L1MCa LINE L1 -4740 1686 1377 215 286 0 0 chr21 17967198 17967261 -26940309 + T-rich Low_complexity Low_complexity 2 64 0 2451 54 0 0 chr21 17967897 17968192 -26939378 + AluY SINE Alu 6 300 -11 512 68 81 0 chr21 17968590 17968664 -26938906 - MADE1 DNA Mariner 0 80 1 22 35 0 0 chr21 17969187 17969216 -26938354 + AT_rich Low_complexity Low_complexity 1 29 0 2344 113 42 8 chr21 17970509 17970888 -26936682 + L1MA3 LINE L1 5914 6305 0 2251 109 0 3 chr21 17970986 17971290 -26936280 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr21 17971650 17971677 -26935893 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr21 17972963 17972993 -26934577 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1963 135 3 10 chr21 17973224 17973561 -26934009 + AluSq SINE Alu 4 338 0 21 0 0 0 chr21 17974096 17974117 -26933453 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr21 17975536 17975583 -26931987 + AT_rich Low_complexity Low_complexity 1 47 0 858 298 12 4 chr21 17975716 17975974 -26931596 + MLT1E1 LTR MaLR 3 262 -392 432 319 19 6 chr21 17976020 17976177 -26931393 + MLT1E1 LTR MaLR 313 471 -153 379 215 14 174 chr21 17976178 17976322 -26931248 - FLAM_A SINE Alu -12 121 1 663 250 32 6 chr21 17976326 17976482 -26931088 + MLT1E1 LTR MaLR 495 654 0 252 218 0 64 chr21 17977195 17977273 -26930297 + L1MB2 LINE L1 5981 6053 -118 2895 225 64 28 chr21 17977576 17978465 -26929105 - L1M4c LINE L1 -1959 4011 3091 313 146 0 0 chr21 17978468 17978516 -26929054 - L1 LINE L1 -3451 2519 2472 * 4031 117 51 5 chr21 17978513 17979528 -26928042 + L1PBa LINE L1 2307 3369 -3493 354 203 26 59 chr21 17979532 17979685 -26927885 - L1M4c LINE L1 -3106 2864 2717 1904 260 56 42 chr21 17979743 17980634 -26926936 - L1M4c LINE L1 -4523 1368 560 1634 209 38 51 chr21 17980637 17981010 -26926560 + Tigger4(Zombi) DNA MER2_type 2 369 -2362 4899 190 34 40 chr21 17981011 17982089 -26925481 + Tigger4(Zombi) DNA MER2_type 1660 2731 0 582 301 35 5 chr21 17982102 17982301 -26925269 - L1M4c LINE L1 -5014 877 673 265 340 54 14 chr21 17982440 17982596 -26924974 - L1 LINE L1 -5212 679 268 375 326 82 3 chr21 17982669 17982868 -26924702 - L1M4c LINE L1 -5219 672 187 760 350 31 19 chr21 17982930 17983290 -26924280 - L1M4c LINE L1 -5524 367 4 1366 218 66 29 chr21 17983536 17983930 -26923640 + MER89 LTR ERV1 3 548 -11 3070 219 53 21 chr21 17983998 17984802 -26922768 + L1MB3 LINE L1 5320 6149 -34 310 310 121 97 chr21 17985196 17985683 -26921887 - HAL1 LINE L1 -1993 514 16 211 170 0 43 chr21 17986481 17986516 -26921054 + (TATATG)n Simple_repeat Simple_repeat 3 37 -10 12532 155 59 7 chr21 17986516 17988812 -26918758 - Tigger1 DNA MER2_type 0 2418 2 211 170 0 43 chr21 17988812 17988823 -26918747 + (TATATG)n Simple_repeat Simple_repeat 37 47 0 56 29 0 0 chr21 17989144 17989214 -26918356 + AT_rich Low_complexity Low_complexity 1 70 0 2797 152 9 9 chr21 17989791 17990258 -26917312 + L1 LINE L1 3830 4296 -1850 2006 98 0 7 chr21 17991369 17991669 -26915901 - AluSg SINE Alu 0 311 14 5545 34 0 0 chr21 17991914 17992571 -26914999 + L1PA5 LINE L1 5494 6150 -4 46 78 0 0 chr21 17993231 17993333 -26914237 + AT_rich Low_complexity Low_complexity 1 102 0 3170 201 193 31 chr21 17994491 17995549 -26912021 - L1MC2 LINE L1 -11 7755 6145 2142 64 74 3 chr21 17995560 17995857 -26911713 - LTR17 LTR ERV1 0 780 463 7454 177 72 11 chr21 17995857 17997387 -26910183 - L1P3 LINE L1 -3278 3183 1561 689 109 10 0 chr21 17997395 17997496 -26910074 + LTR9B LTR ERV1 1 102 -542 1772 196 9 18 chr21 17997500 17997842 -26909728 + HUERS-P3b LTR ERV1 157 495 -6923 11622 123 14 17 chr21 17997965 17999723 -26907847 + HUERS-P3b LTR ERV1 891 2642 -4776 2378 186 29 5 chr21 17999723 18000143 -26907427 - LTR8 LTR ERV1 -250 441 12 1932 138 19 6 chr21 18000145 18000321 -26907249 + HUERS-P3b LTR ERV1 3064 3247 -4171 2448 44 0 3 chr21 18000321 18000614 -26906956 - AluY SINE Alu -6 305 14 1932 138 19 6 chr21 18000614 18000756 -26906814 + HUERS-P3b LTR ERV1 3247 3386 -4032 * 2070 150 3 0 chr21 18000727 18001041 -26906529 + HUERS-P3 LTR ERV1 8601 8915 -4 4278 109 9 8 chr21 18001045 18001687 -26905883 + LTR9B LTR ERV1 2 644 0 5712 213 15 50 chr21 18001687 18003271 -26904299 - L1P3 LINE L1 -4734 1141 1 1227 217 125 78 chr21 18003279 18003961 -26903609 - L1MCa LINE L1 -4508 2056 1343 459 213 28 28 chr21 18004001 18004109 -26903461 - FLAM_A SINE Alu -17 125 18 238 148 0 37 chr21 18004115 18004169 -26903401 - L1MCa LINE L1 -5364 1200 1149 * 1889 257 75 52 chr21 18004168 18004845 -26902725 - L1MCa LINE L1 -5346 699 7 251 216 55 99 chr21 18005710 18005891 -26901679 - L1ME LINE L1 -239 5882 5710 1980 88 46 7 chr21 18006343 18006627 -26900943 - AluY SINE Alu -16 295 1 331 304 87 70 chr21 18006921 18007266 -26900304 - L1ME LINE L1 -302 5819 5469 207 0 0 0 chr21 18007604 18007627 -26899943 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr21 18007809 18007862 -26899708 + AT_rich Low_complexity Low_complexity 1 53 0 1196 289 38 61 chr21 18007862 18008661 -26898909 - L1MC5 LINE L1 -449 7512 6733 240 59 0 0 chr21 18011266 18011300 -26896270 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1613 252 49 34 chr21 18011402 18011937 -26895633 - LTR55 LTR ERV -5 543 1 2097 144 19 25 chr21 18012526 18012888 -26894682 + THE1B LTR MaLR 1 360 -4 24 0 0 0 chr21 18013208 18013232 -26894338 + AT_rich Low_complexity Low_complexity 1 24 0 201 266 46 12 chr21 18014939 18015112 -26892458 + (TA)n Simple_repeat Simple_repeat 1 179 0 286 328 24 32 chr21 18015244 18015259 -26892311 - ERVL LTR ERVL -1317 4447 4433 1393 201 88 31 chr21 18015259 18015613 -26891957 - MLT1A2 LTR MaLR 0 374 1 286 328 24 32 chr21 18015613 18015722 -26891848 - ERVL LTR ERVL -1331 4433 4324 992 343 79 36 chr21 18016244 18017264 -26890306 - ERVL LTR ERVL -1963 3522 2459 24 0 0 0 chr21 18017647 18017671 -26889899 + AT_rich Low_complexity Low_complexity 1 24 0 419 384 88 11 chr21 18017675 18017938 -26889632 + HERV16 LTR ERVL 2807 3089 -1907 1908 154 26 32 chr21 18018144 18018521 -26889049 - THE1C LTR MaLR 0 375 1 2193 107 0 31 chr21 18019521 18019840 -26887730 - AluSq SINE Alu -4 309 1 259 289 0 62 chr21 18020166 18020263 -26887307 - ERVL LTR ERVL -4866 898 808 260 314 65 48 chr21 18020290 18020580 -26886990 - ERVL LTR ERVL -4340 656 362 254 203 25 13 chr21 18021482 18021561 -26886009 - HAL1 LINE L1 -108 2399 2320 314 45 23 0 chr21 18022013 18022057 -26885513 + (CA)n Simple_repeat Simple_repeat 2 46 0 1371 163 68 31 chr21 18022132 18022426 -26885144 - THE1C LTR MaLR -70 305 1 2115 166 38 20 chr21 18022431 18022828 -26884742 + MSTB1 LTR MaLR 28 431 -1 415 239 57 0 chr21 18023784 18023872 -26883698 - Tigger7 DNA MER2_type 0 2491 2399 2087 219 101 23 chr21 18023872 18024355 -26883215 - Tigger7 DNA MER2_type -212 521 1 2042 146 54 14 chr21 18024973 18025323 -26882247 + THE1B LTR MaLR 1 364 0 11201 111 3 0 chr21 18025324 18026898 -26880672 + THE1B-int LTR MaLR 2 1580 0 2233 126 54 14 chr21 18026898 18027248 -26880322 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr21 18028309 18028337 -26879233 + AT_rich Low_complexity Low_complexity 1 28 0 673 334 126 37 chr21 18028343 18029182 -26878388 + L2 LINE L2 2151 3066 -247 22 56 0 0 chr21 18029247 18029283 -26878287 + AT_rich Low_complexity Low_complexity 1 36 0 783 324 132 22 chr21 18029469 18030319 -26877251 + L2 LINE L2 2335 3293 -20 318 328 62 26 chr21 18030355 18030550 -26877020 + L1MC3 LINE L1 4418 4619 -1527 645 263 153 87 chr21 18030682 18031187 -26876383 + MLT1F LTR MaLR 1 538 -4 200 218 91 0 chr21 18031928 18031983 -26875587 - MIR SINE MIR -121 141 82 27 49 0 0 chr21 18032399 18032440 -26875130 + AT_rich Low_complexity Low_complexity 1 41 0 3245 237 63 26 chr21 18032980 18034115 -26873455 + L1MC3 LINE L1 5135 7743 -42 213 65 0 0 chr21 18034838 18034869 -26872701 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2000 141 0 0 chr21 18034873 18035170 -26872400 + AluSx SINE Alu 1 297 -15 31 58 0 0 chr21 18036045 18036097 -26871473 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 18036459 18036497 -26871073 + AT_rich Low_complexity Low_complexity 1 38 0 1744 157 150 38 chr21 18039051 18039478 -26868092 - MLT2B2 LTR ERVL -35 480 6 7709 159 57 9 chr21 18040366 18040434 -26867136 - Tigger1 DNA MER2_type -916 1502 1439 1998 140 0 7 chr21 18040434 18040741 -26866829 + AluSx SINE Alu 3 307 -5 7709 159 57 9 chr21 18040741 18041924 -26865646 - Tigger1 DNA MER2_type -979 1439 174 222 37 0 0 chr21 18041924 18041951 -26865619 + (TAA)n Simple_repeat Simple_repeat 3 29 0 7709 159 57 9 chr21 18041951 18042101 -26865469 - Tigger1 DNA MER2_type -2244 174 33 200 250 10 40 chr21 18042268 18042368 -26865202 + T-rich Low_complexity Low_complexity 2 98 0 1459 201 3 39 chr21 18042442 18042750 -26864820 + AluJo SINE Alu 3 299 -13 22 56 0 0 chr21 18043451 18043487 -26864083 + AT_rich Low_complexity Low_complexity 1 36 0 23 86 0 0 chr21 18043629 18043687 -26863883 + AT_rich Low_complexity Low_complexity 1 58 0 1629 181 7 3 chr21 18046463 18046761 -26860809 - AluJo SINE Alu -13 299 1 21 0 0 0 chr21 18046971 18046992 -26860578 + AT_rich Low_complexity Low_complexity 1 21 0 193 54 0 54 chr21 18047010 18047047 -26860523 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 18047614 18047635 -26859935 + AT_rich Low_complexity Low_complexity 1 21 0 1495 120 0 21 chr21 18047790 18048023 -26859547 - AluSg/x SINE Alu -6 306 79 29 70 0 0 chr21 18048569 18048626 -26858944 + AT_rich Low_complexity Low_complexity 1 57 0 2209 110 0 0 chr21 18050099 18050399 -26857171 - AluSx SINE Alu -12 300 1 329 117 17 0 chr21 18050497 18050557 -26857013 + (TA)n Simple_repeat Simple_repeat 2 62 0 186 43 0 0 chr21 18050878 18050901 -26856669 + (TA)n Simple_repeat Simple_repeat 2 24 0 14070 43 8 0 chr21 18050901 18053399 -26854171 - L1PA5 LINE L1 -5 6149 3628 1660 144 5 75 chr21 18053929 18054300 -26853270 - MER4A LTR ERV1 0 664 261 510 133 89 0 chr21 18054300 18054390 -26853180 - MER4A LTR ERV1 -566 98 1 21 57 0 0 chr21 18054442 18054477 -26853093 + AT_rich Low_complexity Low_complexity 1 35 0 238 83 0 0 chr21 18054503 18054539 -26853031 + tRNA-Cys-TGC tRNA tRNA 1 36 -39 1180 238 132 33 chr21 18054566 18054990 -26852580 + MLT1C LTR MaLR 1 390 0 234 86 0 0 chr21 18055195 18055209 -26852361 + (CAT)n Simple_repeat Simple_repeat 2 15 -21 3372 96 15 0 chr21 18055209 18055688 -26851882 - LTR19A LTR ERV1 0 486 1 234 86 0 0 chr21 18055688 18055708 -26851862 + (CAT)n Simple_repeat Simple_repeat 14 36 0 369 0 0 0 chr21 18055758 18055799 -26851771 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 244 57 106 chr21 18055889 18056012 -26851558 + L2 LINE L2 3155 3271 -1 191 298 48 75 chr21 18056112 18056300 -26851270 - MIR SINE MIR -3 259 77 219 325 0 12 chr21 18057163 18057246 -26850324 - MIR SINE MIR 0 262 181 23 0 0 0 chr21 18057632 18057655 -26849915 + AT_rich Low_complexity Low_complexity 1 23 0 266 250 0 0 chr21 18058288 18058352 -26849218 + A-rich Low_complexity Low_complexity 1 64 0 308 255 0 29 chr21 18058385 18058487 -26849083 + A-rich Low_complexity Low_complexity 2 100 0 22 80 0 0 chr21 18058994 18059044 -26848526 + AT_rich Low_complexity Low_complexity 1 50 0 183 156 0 0 chr21 18059337 18059369 -26848201 + GA-rich Low_complexity Low_complexity 3 34 0 7636 25 2 1 chr21 18059753 18060672 -26846898 - L1P LINE L1 -925 5221 4302 6976 31 1 0 chr21 18060672 18061499 -26846071 + L1PA3 LINE L1 5323 6152 -3 23 33 0 0 chr21 18061499 18061529 -26846041 + AT_rich Low_complexity Low_complexity 1 30 0 304 261 82 74 chr21 18062060 18062317 -26845253 + L1MC4a LINE L1 5002 5260 -886 572 303 139 6 chr21 18062326 18062649 -26844921 + L1MC4a LINE L1 5268 5633 -2175 1545 282 111 19 chr21 18062695 18063500 -26844070 + L1MC4a LINE L1 5713 6591 -1217 1189 239 25 48 chr21 18063511 18063951 -26843619 + L1MC4 LINE L1 6825 7254 -788 352 239 85 0 chr21 18064027 18064157 -26843413 + L1MC4 LINE L1 7902 8042 0 407 333 59 14 chr21 18064532 18064754 -26842816 + MIR SINE MIR 29 260 -2 22 35 0 0 chr21 18065436 18065465 -26842105 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr21 18065738 18065784 -26841786 + AT_rich Low_complexity Low_complexity 1 46 0 194 294 0 0 chr21 18067024 18067075 -26840495 - L2 LINE L2 -3 3269 3219 621 246 0 0 chr21 18067091 18067217 -26840353 + MER7A DNA MER2_type 2 125 -221 320 270 56 16 chr21 18067290 18067416 -26840154 + L1ME LINE L1 4848 4978 -1168 5914 148 48 50 chr21 18067416 18068405 -26839165 + Tigger3b DNA MER2_type 1 988 -2040 1865 102 34 4 chr21 18068405 18068671 -26838899 - AluSq SINE Alu -35 278 5 5914 148 48 50 chr21 18068671 18068915 -26838655 + Tigger3b DNA MER2_type 988 1231 0 371 323 50 50 chr21 18069401 18069602 -26837968 + L2 LINE L2 2861 3061 -211 22 0 0 0 chr21 18069680 18069702 -26837868 + AT_rich Low_complexity Low_complexity 1 22 0 1225 268 105 70 chr21 18070047 18071831 -26835739 + L1MC/D LINE L1 2202 3921 -2225 2187 107 0 16 chr21 18071831 18072141 -26835429 + AluSp SINE Alu 1 305 -8 1225 268 105 70 chr21 18072141 18072316 -26835254 + L1MC/D LINE L1 3921 4088 -2058 1620 215 13 32 chr21 18072316 18072688 -26834882 - MLT1A1 LTR MaLR 0 365 1 1225 268 105 70 chr21 18072688 18072854 -26834716 + L1MC/D LINE L1 4088 4404 -1742 1009 221 14 0 chr21 18072863 18073076 -26834494 + L1MC/D LINE L1 5471 5686 -647 689 197 8 18 chr21 18073097 18073244 -26834326 - MSTC LTR MaLR -296 161 3 376 272 64 8 chr21 18073253 18073378 -26834192 + L1ME LINE L1 5589 5720 -442 1931 116 0 8 chr21 18073899 18074199 -26833371 + AluSc SINE Alu 16 313 0 278 50 25 0 chr21 18077182 18077222 -26830348 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 174 0 22 chr21 18079627 18079673 -26827897 + (TA)n Simple_repeat Simple_repeat 2 46 0 477 90 0 0 chr21 18079988 18080055 -26827515 + (TG)n Simple_repeat Simple_repeat 2 68 0 1492 200 54 11 chr21 18080063 18080413 -26827157 - MLT1A1 LTR MaLR 0 365 1 220 356 0 0 chr21 18080437 18080510 -26827060 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 1546 129 8 0 chr21 18080554 18080802 -26826768 - L1PA13 LINE L1 -4 6159 5910 1781 223 8 6 chr21 18080835 18081194 -26826376 - MLT2D LTR ERVL -52 362 3 2434 73 0 0 chr21 18081553 18081855 -26825715 - AluY SINE Alu -8 303 2 1554 170 61 45 chr21 18081999 18082358 -26825212 + MLT1A1 LTR MaLR 1 365 0 193 51 51 26 chr21 18082428 18082467 -26825103 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 202 211 0 0 chr21 18083185 18083223 -26824347 + GA-rich Low_complexity Low_complexity 1 38 0 1264 118 86 16 chr21 18084801 18085046 -26822524 - L1MA8 LINE L1 -4 6287 6026 40 37 0 0 chr21 18085047 18085101 -26822469 + AT_rich Low_complexity Low_complexity 1 54 0 367 141 16 0 chr21 18085102 18085166 -26822404 - L1PA16 LINE L1 -3 6163 6099 4397 178 41 13 chr21 18085168 18085903 -26821667 - L1PA16 LINE L1 -105 6061 5291 189 0 0 0 chr21 18085903 18085924 -26821646 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 4397 178 41 13 chr21 18085924 18086350 -26821220 - L1PA16 LINE L1 -875 5291 4879 421 346 139 25 chr21 18086513 18087001 -26820569 - HAL1 LINE L1 -52 2455 1912 261 341 46 32 chr21 18087027 18087244 -26820326 - HAL1 LINE L1 -609 1898 1679 23 0 0 0 chr21 18087436 18087459 -26820111 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr21 18087538 18087595 -26819975 + AT_rich Low_complexity Low_complexity 1 57 0 377 271 21 75 chr21 18087759 18087837 -26819733 - MIR SINE MIR -3 259 178 1920 108 3 14 chr21 18087837 18088154 -26819416 + AluSq SINE Alu 1 314 0 377 271 21 75 chr21 18088154 18088262 -26819308 - MIR SINE MIR -84 178 82 214 336 0 8 chr21 18090548 18090670 -26816900 + (CCA)n Simple_repeat Simple_repeat 1 121 0 248 0 31 0 chr21 18090845 18090877 -26816693 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 258 116 0 0 chr21 18090977 18091020 -26816550 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 266 47 0 chr21 18091058 18091122 -26816448 - L2 LINE L2 -32 3281 3215 2022 135 0 0 chr21 18091248 18091537 -26816033 + AluSx SINE Alu 1 289 -23 230 250 0 62 chr21 18091544 18091640 -26815930 + L1MC4 LINE L1 6614 6703 -1339 241 133 0 0 chr21 18091652 18091697 -26815873 + LTR66 LTR ERVL 394 438 -172 238 192 0 0 chr21 18091702 18091754 -26815816 + L1MC4 LINE L1 6652 6703 -1339 216 0 0 0 chr21 18091754 18091778 -26815792 + (TA)n Simple_repeat Simple_repeat 2 25 0 407 361 24 40 chr21 18092310 18092559 -26815011 + HAL1 LINE L1 1550 1794 -713 633 352 62 25 chr21 18092672 18093143 -26814427 + HAL1 LINE L1 2000 2487 -20 22 35 0 0 chr21 18093177 18093206 -26814364 + AT_rich Low_complexity Low_complexity 1 29 0 384 77 0 0 chr21 18093480 18093532 -26814038 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 61 0 0 chr21 18094795 18094828 -26812742 + (TG)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr21 18095516 18095540 -26812030 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 262 283 123 9 chr21 18095781 18095887 -26811683 - L2 LINE L2 -19 3253 3136 1236 293 79 5 chr21 18096973 18097342 -26810228 + MSTD LTR MaLR 1 396 0 3462 71 6 40 chr21 18097697 18098168 -26809402 - L1PA7 LINE L1 -7 6147 5661 1885 114 0 0 chr21 18098168 18098423 -26809147 - AluY SINE Alu -13 298 44 3462 71 6 40 chr21 18098423 18099032 -26808538 - L1PA7 LINE L1 -493 5661 4890 4080 139 22 74 chr21 18100111 18100939 -26806631 + LTR1 LTR ERV1 1 785 0 1905 130 75 23 chr21 18101232 18101578 -26805992 - THE1B LTR MaLR 0 364 1 11617 88 4 10 chr21 18101579 18103167 -26804403 - THE1B-int LTR MaLR -1 1579 1 2070 135 48 22 chr21 18103167 18103522 -26804048 - THE1B LTR MaLR 0 364 1 1949 185 11 21 chr21 18104250 18104623 -26802947 + MSTB1 LTR MaLR 1 369 -63 193 29 59 0 chr21 18105560 18105594 -26801976 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 0 chr21 18105594 18105619 -26801951 + AT_rich Low_complexity Low_complexity 1 25 0 1481 239 11 16 chr21 18105646 18106010 -26801560 - MLT1A1 LTR MaLR 0 365 4 2219 91 0 9 chr21 18107306 18107624 -26799946 - L1PA6 LINE L1 0 6154 5840 2114 47 0 0 chr21 18107624 18107879 -26799691 + L1P2 LINE L1 5407 5661 -493 25 31 0 0 chr21 18107990 18108022 -26799548 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 18108856 18108879 -26798691 + AT_rich Low_complexity Low_complexity 1 23 0 2310 87 0 3 chr21 18109220 18109532 -26798038 - AluY SINE Alu 0 311 1 25 0 0 0 chr21 18112505 18112530 -26795040 + AT_rich Low_complexity Low_complexity 1 25 0 227 306 135 9 chr21 18112653 18112764 -26794806 + MLT1I LTR MaLR 81 205 -204 289 244 0 13 chr21 18112826 18112904 -26794666 + MLT1I LTR MaLR 317 393 -16 183 358 28 37 chr21 18113137 18113246 -26794324 - L2 LINE L2 -179 3093 2986 338 221 29 0 chr21 18113443 18113511 -26794059 + MER76 LTR ERV 1 70 -618 1615 243 100 53 chr21 18113590 18113821 -26793749 + MER76 LTR ERV 63 282 -406 1792 123 27 10 chr21 18113821 18114121 -26793449 - AluSx SINE Alu -7 305 1 1615 243 100 53 chr21 18114121 18114487 -26793083 + MER76 LTR ERV 282 688 0 837 332 44 32 chr21 18114605 18115169 -26792401 - HERVL LTR ERVL -2728 2926 2356 1870 137 0 17 chr21 18117718 18118011 -26789559 - AluSx SINE Alu -15 297 10 295 332 46 36 chr21 18118209 18118405 -26789165 + MER63A DNA MER1_type 1 198 -12 1710 81 13 0 chr21 18118848 18119082 -26788488 - L1PA8 LINE L1 -9 6163 5927 246 301 36 0 chr21 18119174 18119257 -26788313 + MIR SINE MIR 156 241 -21 419 345 5 15 chr21 18119360 18119557 -26788013 - MIR SINE MIR -31 231 37 226 206 59 0 chr21 18120008 18120076 -26787494 - L1M4b LINE L1 -5210 1649 1578 225 65 0 0 chr21 18120170 18120201 -26787369 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1510 154 56 8 chr21 18120204 18120471 -26787099 - AluSx SINE Alu -32 280 1 291 54 0 0 chr21 18120745 18120782 -26786788 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 279 330 10 0 chr21 18121223 18121320 -26786250 - MER69 DNA AcHobo -2419 107 10 34 24 0 0 chr21 18121962 18122003 -26785567 + AT_rich Low_complexity Low_complexity 1 41 0 282 115 0 0 chr21 18122587 18122639 -26784931 + (GA)n Simple_repeat Simple_repeat 1 52 0 1120 95 0 0 chr21 18123161 18123308 -26784262 - AluY SINE Alu -164 147 1 218 19 58 58 chr21 18123322 18123374 -26784196 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 232 308 28 90 chr21 18123464 18123675 -26783895 - L1MC/D LINE L1 -2164 5644 5447 1013 130 6 0 chr21 18123713 18123874 -26783696 - AluSg/x SINE Alu -3 309 148 418 326 112 30 chr21 18124137 18124370 -26783200 + MIR SINE MIR 6 257 -5 766 306 80 34 chr21 18124460 18124875 -26782695 + L2 LINE L2 2876 3309 -4 23 86 0 0 chr21 18126446 18126504 -26781066 + AT_rich Low_complexity Low_complexity 1 58 0 263 289 123 9 chr21 18127139 18127253 -26780317 - MIR SINE MIR -57 205 79 25 51 0 0 chr21 18127458 18127497 -26780073 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr21 18128374 18128402 -26779168 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 18129006 18129050 -26778520 + AT_rich Low_complexity Low_complexity 1 44 0 26125 55 6 2 chr21 18130966 18135090 -26772480 + L1PA5 LINE L1 2012 6153 -1 1969 177 83 5 chr21 18137196 18137591 -26769979 + MSTA LTR MaLR 1 426 -2 27 49 0 0 chr21 18138037 18138078 -26769492 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr21 18138285 18138309 -26769261 + AT_rich Low_complexity Low_complexity 1 24 0 309 109 0 0 chr21 18139436 18139482 -26768088 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr21 18139509 18139561 -26768009 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr21 18140044 18140077 -26767493 + AT_rich Low_complexity Low_complexity 1 33 0 256 136 51 0 chr21 18140095 18140154 -26767416 + (CATA)n Simple_repeat Simple_repeat 1 62 0 42 0 0 0 chr21 18141150 18141192 -26766378 + AT_rich Low_complexity Low_complexity 1 42 0 2496 182 14 41 chr21 18142098 18142354 -26765216 - MER70B LTR ERVL -103 475 237 1898 83 29 40 chr21 18142354 18142630 -26764940 - AluSx SINE Alu -19 293 21 2496 182 14 41 chr21 18142630 18142861 -26764709 - MER70B LTR ERVL -341 237 1 213 211 0 0 chr21 18143357 18143409 -26764161 + (TA)n Simple_repeat Simple_repeat 2 53 0 1558 85 0 5 chr21 18143995 18144196 -26763374 + AluY SINE Alu 1 200 -111 1731 177 91 19 chr21 18144998 18145520 -26762050 - MLT2A2 LTR ERVL 0 554 1 454 317 73 45 chr21 18146185 18146582 -26760988 + HERVL LTR ERVL 3506 3913 -1741 486 363 44 14 chr21 18146689 18147033 -26760537 + HERVL LTR ERVL 4067 4420 -1234 222 203 72 0 chr21 18148647 18148716 -26758854 + A-rich Low_complexity Low_complexity 3 76 0 216 294 12 12 chr21 18148794 18148879 -26758691 + (TAG)n Simple_repeat Simple_repeat 2 86 0 30 27 0 0 chr21 18149757 18149794 -26757776 + AT_rich Low_complexity Low_complexity 1 37 0 384 179 0 12 chr21 18149809 18149893 -26757677 - L1PB4 LINE L1 0 6156 6074 271 248 9 19 chr21 18150300 18150405 -26757165 + (TA)n Simple_repeat Simple_repeat 2 105 0 1622 249 83 78 chr21 18151426 18151930 -26755640 - MLT1E1 LTR MaLR -1 653 144 1366 233 50 11 chr21 18151930 18152290 -26755280 - MLT1A2 LTR MaLR 0 374 1 1622 249 83 78 chr21 18152290 18152423 -26755147 - MLT1E1 LTR MaLR -510 144 13 225 295 16 33 chr21 18152512 18152634 -26754936 + GA-rich Low_complexity Low_complexity 4 123 0 205 241 8 45 chr21 18152915 18153048 -26754522 + CT-rich Low_complexity Low_complexity 3 130 0 242 289 66 58 chr21 18153080 18153201 -26754369 + L2 LINE L2 2438 2559 -755 1188 285 92 5 chr21 18153532 18153956 -26753614 + MLT1C LTR MaLR 7 467 0 213 393 16 16 chr21 18153958 18154080 -26753490 + L2 LINE L2 2987 3108 -164 1073 86 0 0 chr21 18154973 18155113 -26752457 - AluSg/x SINE Alu -17 293 154 516 146 0 0 chr21 18155116 18155198 -26752372 - AluY SINE Alu -236 82 1 11742 175 43 26 chr21 18156262 18158691 -26748879 + L1M4c LINE L1 18 2487 -3897 1305 203 103 11 chr21 18158689 18159049 -26748521 + L1MB3 LINE L1 5783 6175 -8 * 32 0 0 0 chr21 18160298 18160330 -26747240 + AT_rich Low_complexity Low_complexity 1 32 0 519 335 35 22 chr21 18160970 18161200 -26746370 + MIR SINE MIR 12 244 -18 2360 62 0 20 chr21 18161792 18162098 -26745472 + AluY SINE Alu 1 300 -11 477 198 0 0 chr21 18162101 18162202 -26745368 + GA-rich Low_complexity Low_complexity 2 102 0 235 143 0 0 chr21 18162212 18162247 -26745323 + MLT1I LTR MaLR 100 134 -275 253 136 91 15 chr21 18162493 18162559 -26745011 + MLT1F LTR MaLR 464 534 -8 285 208 10 69 chr21 18162714 18162815 -26744755 - MLT1K LTR MaLR -2 586 492 592 263 20 0 chr21 18162961 18163113 -26744457 - MIR SINE MIR -1 261 107 233 196 0 0 chr21 18163140 18163186 -26744384 + L1MC4 LINE L1 6653 6698 -1344 24 32 0 0 chr21 18163933 18163964 -26743606 + AT_rich Low_complexity Low_complexity 1 31 0 594 283 204 41 chr21 18163986 18164378 -26743192 + L2 LINE L2 2855 3310 -3 262 253 51 13 chr21 18164740 18164819 -26742751 - MIR SINE MIR -73 189 108 2554 37 0 34 chr21 18164897 18165218 -26742352 - AluY SINE Alu 0 311 2 373 340 42 11 chr21 18166680 18166871 -26740699 - L1MCc LINE L1 -5949 474 278 258 148 0 0 chr21 18167489 18167543 -26740027 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 71 0 0 chr21 18167854 18167896 -26739674 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr21 18168329 18168353 -26739217 + AT_rich Low_complexity Low_complexity 1 24 0 887 85 0 8 chr21 18169785 18169914 -26737656 + L1MA4 LINE L1 6162 6289 -11 323 252 103 19 chr21 18170402 18170509 -26737061 - MER119 DNA MER1_type -12 571 456 22 35 0 0 chr21 18171011 18171040 -26736530 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 18171294 18171329 -26736241 + AT_rich Low_complexity Low_complexity 1 35 0 200 203 17 34 chr21 18171350 18171409 -26736161 + (ATTG)n Simple_repeat Simple_repeat 4 61 0 5847 179 220 20 chr21 18171444 18172906 -26734664 - MER52A LTR ERV1 0 1755 3 1562 132 38 7 chr21 18172908 18173386 -26734184 - MER52A-int LTR ERV1 0 7091 6563 1038 172 98 8 chr21 18173373 18173654 -26733916 - MER52-int LTR ERV1 -3818 3273 2930 * 559 128 0 0 chr21 18173654 18173747 -26733823 + MLT2A2 LTR ERVL 1 93 -360 1095 150 0 0 chr21 18173747 18173907 -26733663 - THE1B LTR MaLR 0 364 205 * 1748 180 0 58 chr21 18173904 18174248 -26733322 - MER52A LTR ERV1 -1008 747 424 584 244 6 65 chr21 18174239 18174407 -26733163 - MER52A LTR ERV1 -1581 174 17 * 1333 196 18 97 chr21 18174512 18174905 -26732665 + MLT1A1 LTR MaLR 4 365 0 1933 241 50 63 chr21 18174969 18175240 -26732330 - MER76 LTR ERV -78 610 337 2229 118 0 0 chr21 18175240 18175544 -26732026 + AluSx SINE Alu 1 304 -8 1933 241 50 63 chr21 18175544 18175890 -26731680 - MER76 LTR ERV -351 337 1 225 0 0 0 chr21 18175950 18175975 -26731595 + (A)n Simple_repeat Simple_repeat 1 25 0 28 86 0 0 chr21 18176446 18176516 -26731054 + AT_rich Low_complexity Low_complexity 1 70 0 24 77 0 0 chr21 18177894 18177946 -26729624 + AT_rich Low_complexity Low_complexity 1 52 0 23 86 0 0 chr21 18178200 18178258 -26729312 + AT_rich Low_complexity Low_complexity 1 58 0 229 301 110 0 chr21 18178709 18178782 -26728788 + L2 LINE L2 3228 3308 -5 201 229 0 0 chr21 18179084 18179119 -26728451 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr21 18179424 18179452 -26728118 + AT_rich Low_complexity Low_complexity 1 28 0 2214 90 7 10 chr21 18180285 18180586 -26726984 - AluSc SINE Alu -9 300 1 245 333 56 41 chr21 18180649 18180844 -26726726 + L1MC/D LINE L1 5528 5725 -2083 602 293 27 31 chr21 18181550 18181772 -26725798 - MIR SINE MIR -10 252 32 34 24 0 0 chr21 18181778 18181819 -26725751 + AT_rich Low_complexity Low_complexity 1 41 0 2165 181 28 32 chr21 18182088 18182524 -26725046 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr21 18182613 18182635 -26724935 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr21 18184732 18184779 -26722791 + AT_rich Low_complexity Low_complexity 1 47 0 354 98 0 0 chr21 18185365 18185416 -26722154 + (TG)n Simple_repeat Simple_repeat 2 52 0 189 246 0 0 chr21 18185770 18185835 -26721735 + (CA)n Simple_repeat Simple_repeat 2 66 0 228 35 0 0 chr21 18186643 18186672 -26720898 + (TC)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr21 18186671 18186694 -26720876 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 1122 203 114 5 chr21 18187034 18187438 -26720132 + Charlie1b DNA MER1_type 70 517 -6 221 359 66 0 chr21 18187871 18187977 -26719593 + L2 LINE L2 2256 2368 -946 763 259 82 22 chr21 18188042 18188397 -26719173 + L1MB7 LINE L1 1137 1512 -5030 1605 244 29 61 chr21 18188413 18189087 -26718483 + L1MB7 LINE L1 2586 3201 -3443 * 5402 235 85 68 chr21 18189083 18189695 -26717875 + L1MB7 LINE L1 3047 3648 -3034 1020 152 0 0 chr21 18189695 18189874 -26717696 + AluSg/x SINE Alu 135 313 0 5402 235 85 68 chr21 18189874 18190249 -26717321 + L1MB7 LINE L1 3648 4015 -2667 2207 100 0 3 chr21 18190249 18190550 -26717020 + AluY SINE Alu 1 300 -11 5402 235 85 68 chr21 18190550 18190812 -26716758 + L1MB7 LINE L1 4015 4271 -2411 207 114 0 0 chr21 18190812 18190847 -26716723 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5402 235 85 68 chr21 18190847 18191128 -26716442 + L1MB7 LINE L1 4271 4546 -2136 315 0 0 0 chr21 18191128 18191163 -26716407 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5402 235 85 68 chr21 18191163 18191947 -26715623 + L1MB7 LINE L1 4546 5316 -1366 2086 117 0 3 chr21 18191947 18192237 -26715333 + AluSc SINE Alu 1 289 -20 5402 235 85 68 chr21 18192237 18192867 -26714703 + L1MB7 LINE L1 5316 5934 -748 1847 103 136 30 chr21 18192867 18193206 -26714364 - THE1C LTR MaLR 0 375 1 5402 235 85 68 chr21 18193206 18193677 -26713893 + L1MB7 LINE L1 5934 6668 -14 237 277 46 0 chr21 18194460 18194525 -26713045 - HAL1b LINE L1 -882 466 399 4690 169 42 4 chr21 18195001 18196531 -26711039 + L1PA16 LINE L1 4488 6068 -98 301 333 100 60 chr21 18197317 18197566 -26710004 + MIR SINE MIR 1 259 -3 2267 65 0 3 chr21 18197680 18197997 -26709573 - AluY SINE Alu 0 311 1 38 96 0 0 chr21 18198694 18198809 -26708761 + AT_rich Low_complexity Low_complexity 1 115 0 22 56 0 0 chr21 18199596 18199632 -26707938 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr21 18200146 18200170 -26707400 + AT_rich Low_complexity Low_complexity 1 24 0 220 204 0 0 chr21 18201615 18201659 -26705911 + (CAA)n Simple_repeat Simple_repeat 2 45 0 556 316 5 16 chr21 18201917 18202107 -26705463 + L2 LINE L2 2272 2459 -855 518 272 39 28 chr21 18202183 18202363 -26705207 - MLT1H LTR MaLR -335 214 33 293 93 19 0 chr21 18202736 18202790 -26704780 + (TG)n Simple_repeat Simple_repeat 1 55 0 5613 100 27 28 chr21 18202885 18203247 -26704323 + L1PA13 LINE L1 5111 5472 -691 2162 102 3 0 chr21 18203247 18203531 -26704039 - AluY SINE Alu -26 285 1 5613 100 27 28 chr21 18203531 18204211 -26703359 + L1PA13 LINE L1 5472 6152 -11 2105 107 0 19 chr21 18205056 18205366 -26702204 + AluSg SINE Alu 1 304 -6 1348 228 44 15 chr21 18205640 18205971 -26701599 + MLT1A1 LTR MaLR 22 503 -2 28 29 0 0 chr21 18206277 18206312 -26701258 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr21 18206423 18206446 -26701124 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr21 18207034 18207075 -26700495 + AT_rich Low_complexity Low_complexity 1 41 0 375 275 231 43 chr21 18207306 18207652 -26699918 + MLT1J2 LTR MaLR 20 430 -20 1262 56 26 67 chr21 18208632 18208732 -26698838 - L1PA13 LINE L1 -2 6161 6071 1809 128 35 98 chr21 18208732 18209132 -26698438 + THE1C LTR MaLR 1 375 0 1262 56 26 67 chr21 18209132 18209226 -26698344 - L1PA13 LINE L1 -92 6071 5975 1960 126 0 3 chr21 18209226 18209512 -26698058 - AluSg SINE Alu -6 304 20 1718 166 130 38 chr21 18209937 18210162 -26697408 + MSTA LTR MaLR 1 204 -224 2335 61 3 0 chr21 18210162 18210459 -26697111 + AluY SINE Alu 2 299 -12 1718 166 130 38 chr21 18210459 18210625 -26696945 + MSTA LTR MaLR 204 428 0 460 337 96 11 chr21 18210813 18211178 -26696392 - L1MEc LINE L1 -4095 2301 1906 323 318 24 8 chr21 18211226 18211352 -26696218 - L1MEc LINE L1 -4584 1812 1685 1129 36 0 0 chr21 18211486 18211624 -26695946 - L1PA5 LINE L1 0 6154 6017 2775 209 11 68 chr21 18212258 18213023 -26694547 - L1MA7 LINE L1 -1 6290 5570 1925 183 39 13 chr21 18213292 18213681 -26693889 - MSTB LTR MaLR 0 426 28 1713 165 140 16 chr21 18214206 18214570 -26693000 + MSTA LTR MaLR 1 409 -19 1259 280 96 39 chr21 18215263 18215702 -26691868 - MLT1E LTR MaLR -129 464 1 27 29 0 0 chr21 18215962 18215996 -26691574 + AT_rich Low_complexity Low_complexity 1 34 0 298 350 12 55 chr21 18216855 18217018 -26690552 + L2 LINE L2 3125 3280 -33 513 141 7 42 chr21 18217123 18217265 -26690305 + CT-rich Low_complexity Low_complexity 2 138 0 252 0 0 0 chr21 18217263 18217291 -26690279 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 1351 148 109 42 chr21 18217292 18217576 -26689994 - AluJb SINE Alu -9 303 1 222 91 0 0 chr21 18218040 18218073 -26689497 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 459 316 30 23 chr21 18218169 18218470 -26689100 + L1PA12 LINE L1 1 303 -7278 6619 76 56 0 chr21 18219658 18221044 -26686526 - L1PA7 LINE L1 0 6154 4728 6626 82 5 16 chr21 18221044 18221982 -26685588 + L1PA7 LINE L1 3792 4719 -1427 3003 263 42 20 chr21 18221983 18223084 -26684486 - L1M4 LINE L1 -956 5190 4066 447 341 142 0 chr21 18223242 18223468 -26684102 - MIR SINE MIR 0 262 5 27 49 0 0 chr21 18223948 18223989 -26683581 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr21 18224022 18224058 -26683512 + AT_rich Low_complexity Low_complexity 1 36 0 359 276 41 97 chr21 18224459 18224655 -26682915 + MIR SINE MIR 74 258 -4 48 67 0 0 chr21 18225268 18225358 -26682212 + AT_rich Low_complexity Low_complexity 1 90 0 2095 132 3 3 chr21 18225369 18225679 -26681891 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr21 18225701 18225730 -26681840 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 18226778 18226799 -26680771 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr21 18227135 18227185 -26680385 + AT_rich Low_complexity Low_complexity 1 50 0 315 238 89 20 chr21 18228049 18228150 -26679420 - L1ME LINE L1 -460 5661 5554 2023 201 30 59 chr21 18228150 18228642 -26678928 - MER66B LTR ERV1 0 486 9 9057 162 32 32 chr21 18228725 18229484 -26678086 - Ricksha DNA DNA -8 3238 2480 1465 179 0 39 chr21 18229484 18229769 -26677801 + AluJo SINE Alu 14 287 -25 9057 162 32 32 chr21 18229769 18230791 -26676779 - Ricksha DNA DNA -765 2481 1457 2004 89 0 11 chr21 18230793 18231062 -26676508 + AluSx SINE Alu 3 268 -44 234 0 0 0 chr21 18231074 18231100 -26676470 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 892 106 15 0 chr21 18231137 18231269 -26676301 - L1PA13 LINE L1 -261 5902 5769 1390 114 27 0 chr21 18231269 18231488 -26676082 + L1PA13 LINE L1 5939 6163 0 1458 196 7 0 chr21 18231513 18231788 -26675782 + AluJb SINE Alu 12 288 -24 3045 149 21 4 chr21 18231789 18232307 -26675263 - Ricksha DNA DNA -1814 1432 906 328 214 139 48 chr21 18232308 18232495 -26675075 - MLT2B1 LTR ERVL 0 520 317 1906 195 181 10 chr21 18232498 18232979 -26674591 - Ricksha DNA DNA -2645 601 39 649 276 67 30 chr21 18236043 18236340 -26671230 - L1MC4 LINE L1 -970 7072 6765 1789 269 36 18 chr21 18237551 18238225 -26669345 + L1MC1 LINE L1 4312 4997 -1149 237 119 95 0 chr21 18238214 18238256 -26669314 + L1MC/D LINE L1 5546 5591 -2451 * 4484 165 37 9 chr21 18238256 18239104 -26668466 + L1MC1 LINE L1 5463 6333 0 326 205 60 0 chr21 18240057 18240140 -26667430 - LTR49 LTR ERV1 0 595 508 * 607 244 132 12 chr21 18240121 18240469 -26667101 - LTR48B LTR ERV1 -188 456 48 1443 229 31 11 chr21 18240558 18240916 -26666654 - MLT1A1 LTR MaLR 0 365 1 785 278 54 57 chr21 18241041 18241466 -26666104 + MLT2C2 LTR ERVL 1 424 -40 23 33 0 0 chr21 18241490 18241520 -26666050 + AT_rich Low_complexity Low_complexity 1 30 0 241 176 9 37 chr21 18241521 18241629 -26665941 + (TA)n Simple_repeat Simple_repeat 1 105 0 22 0 0 0 chr21 18241825 18241847 -26665723 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr21 18242095 18242129 -26665441 + AT_rich Low_complexity Low_complexity 1 34 0 657 260 122 6 chr21 18242762 18242943 -26664627 - LTR33 LTR ERVL -318 203 2 23 33 0 0 chr21 18243753 18243783 -26663787 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 18244560 18244582 -26662988 + AT_rich Low_complexity Low_complexity 1 22 0 408 190 140 20 chr21 18245730 18245939 -26661631 + FLAM_C SINE Alu 32 252 0 839 169 0 0 chr21 18245943 18246079 -26661491 + FRAM SINE Alu 24 159 -17 2322 62 0 0 chr21 18246955 18247247 -26660323 - AluY SINE Alu -19 292 1 871 333 121 5 chr21 18249554 18250246 -26657324 + L2 LINE L2 2531 3310 -3 247 224 0 82 chr21 18250820 18250918 -26656652 - L1MC4 LINE L1 -1339 6703 6614 * 254 299 0 0 chr21 18250844 18250931 -26656639 + L1MC4 LINE L1 6614 6700 -1342 278 132 53 0 chr21 18252230 18252306 -26655264 + (TA)n Simple_repeat Simple_repeat 1 80 0 376 326 150 14 chr21 18254360 18254654 -26652916 + MLT1J LTR MaLR 20 353 -158 990 98 6 12 chr21 18255870 18256034 -26651536 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 319 342 32 16 chr21 18256682 18256869 -26650701 - MLT1C-int LTR MaLR -489 882 693 1407 291 40 30 chr21 18257052 18257358 -26650212 - MLT1C-int LTR MaLR -771 600 284 1969 120 0 10 chr21 18257358 18257658 -26649912 - AluSc SINE Alu -10 299 3 1407 291 40 30 chr21 18257658 18257943 -26649627 - MLT1C-int LTR MaLR -1087 284 3 256 267 59 30 chr21 18258677 18258778 -26648792 - MIR SINE MIR -48 214 111 192 40 0 0 chr21 18258934 18258959 -26648611 + (TG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr21 18259255 18259276 -26648294 + AT_rich Low_complexity Low_complexity 1 21 0 552 325 69 15 chr21 18259378 18259652 -26647918 + MLT1J1 LTR MaLR 15 303 -143 185 61 30 0 chr21 18259718 18259732 -26647838 + (CAAAAA)n Simple_repeat Simple_repeat 2 14 -21 2505 41 0 16 chr21 18259732 18260048 -26647522 + AluY SINE Alu 1 311 0 185 61 30 0 chr21 18260048 18260066 -26647504 + (CAAAAA)n Simple_repeat Simple_repeat 14 35 0 22 70 0 0 chr21 18261544 18261587 -26645983 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr21 18261628 18261653 -26645917 + AT_rich Low_complexity Low_complexity 1 25 0 32 56 0 14 chr21 18261816 18261855 -26645715 + AT_rich Low_complexity Low_complexity 1 40 -30 6107 179 20 1 chr21 18261855 18261922 -26645648 - L1PA11 LINE L1 -2 6172 6108 1905 109 52 80 chr21 18261922 18262308 -26645262 - THE1C LTR MaLR 0 375 1 6107 179 20 1 chr21 18262308 18264240 -26643330 - L1PA11 LINE L1 -66 6108 4182 32 56 0 14 chr21 18264240 18264271 -26643299 + AT_rich Low_complexity Low_complexity 40 70 0 207 0 0 0 chr21 18264274 18264297 -26643273 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1490 58 0 11 chr21 18264297 18264487 -26643083 - L1PA3 LINE L1 -6 6149 5962 4732 144 19 5 chr21 18264495 18265147 -26642423 - L1PA11 LINE L1 -1982 4164 3498 207 0 0 0 chr21 18265147 18265170 -26642400 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4732 144 19 5 chr21 18265170 18265300 -26642270 - L1PA11 LINE L1 -2648 3498 3371 2440 212 2 0 chr21 18265300 18265743 -26641827 - MLT1C LTR MaLR -15 452 9 24 0 0 0 chr21 18267286 18267310 -26640260 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr21 18267310 18267333 -26640237 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr21 18268431 18268480 -26639090 + AT_rich Low_complexity Low_complexity 1 49 0 351 275 139 35 chr21 18268857 18269115 -26638455 + MLT1J LTR MaLR 1 285 -226 3452 130 32 2 chr21 18270792 18271354 -26636216 - L1PA10 LINE L1 -1169 4977 4399 5644 111 34 12 chr21 18271358 18272528 -26635042 + L1PA10 LINE L1 4979 6167 -1 680 211 36 12 chr21 18273115 18273246 -26634324 - L1M2 LINE L1 -492 5808 5669 2100 114 4 0 chr21 18273246 18273572 -26633998 - AluSq SINE Alu 0 328 2 680 211 36 12 chr21 18273572 18273626 -26633944 - L1M2 LINE L1 -631 5669 5618 253 89 0 0 chr21 18273692 18273737 -26633833 - LTR66 LTR ERVL -165 445 401 227 216 0 0 chr21 18273739 18273790 -26633780 + L1MC4 LINE L1 6653 6703 -1339 181 225 12 12 chr21 18273814 18273894 -26633676 + (TA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chr21 18273894 18273923 -26633647 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 18274060 18274081 -26633489 + AT_rich Low_complexity Low_complexity 1 21 0 8608 179 51 29 chr21 18274147 18277044 -26630526 - L1MA6 LINE L1 0 6504 3556 14491 25 1 0 chr21 18277072 18279552 -26628018 - L1PA4 LINE L1 -3 6152 3671 4663 26 0 0 chr21 18279552 18280118 -26627452 + L1PA4 LINE L1 3095 3660 -2486 3183 237 51 42 chr21 18280116 18281259 -26626311 - L1MA6 LINE L1 -2822 3528 2376 * 696 221 28 0 chr21 18281285 18281430 -26626140 - FAM SINE Alu -23 162 14 2685 283 54 42 chr21 18281442 18282000 -26625570 - L1MA6 LINE L1 -3959 2391 1841 213 39 0 0 chr21 18282000 18282026 -26625544 + (TG)n Simple_repeat Simple_repeat 1 26 0 2685 283 54 42 chr21 18282026 18283559 -26624011 - L1MA6 LINE L1 -4509 1841 626 1601 323 56 33 chr21 18283657 18284391 -26623179 - L1MA6 LINE L1 -5526 755 5 27 0 0 0 chr21 18284441 18284468 -26623102 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 18284502 18284523 -26623047 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 18284845 18284866 -26622704 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr21 18284915 18284958 -26622612 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 18284985 18285007 -26622563 + AT_rich Low_complexity Low_complexity 1 22 0 625 277 115 28 chr21 18285365 18285722 -26621848 - L1ME3A LINE L1 -8 6162 5775 362 254 35 12 chr21 18285789 18285973 -26621597 - L1ME3A LINE L1 -663 5501 5300 2281 186 33 22 chr21 18285975 18286431 -26621139 + MLT1C LTR MaLR 1 461 -6 1154 296 105 36 chr21 18286444 18287555 -26620015 - L1ME3A LINE L1 -852 5294 4107 251 265 92 0 chr21 18288001 18288099 -26619471 + MIR SINE MIR 153 259 -3 459 52 0 0 chr21 18288656 18288714 -26618856 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 2055 138 0 3 chr21 18288720 18289031 -26618539 - AluSx SINE Alu -2 310 1 1542 84 5 0 chr21 18289168 18289370 -26618200 - AluSp SINE Alu -110 203 1 26 30 0 0 chr21 18289402 18289435 -26618135 + AT_rich Low_complexity Low_complexity 1 33 0 6065 112 11 34 chr21 18289443 18290331 -26617239 - L1MA3 LINE L1 0 6305 5441 1498 204 0 44 chr21 18290331 18290649 -26616921 - AluJb SINE Alu -8 304 1 6065 112 11 34 chr21 18290649 18290751 -26616819 - L1MA3 LINE L1 -864 5441 5338 1541 206 24 5 chr21 18290752 18291131 -26616439 + L1MA3 LINE L1 4948 5333 -813 326 313 23 0 chr21 18291656 18291787 -26615783 - L1ME3A LINE L1 -2215 3931 3798 853 271 62 21 chr21 18292012 18292523 -26615047 - MLT1E LTR MaLR 0 593 52 25 51 0 0 chr21 18292598 18292637 -26614933 + AT_rich Low_complexity Low_complexity 1 39 0 4736 208 30 17 chr21 18292841 18294360 -26613210 - L1MC1 LINE L1 -5 6328 4788 646 200 0 15 chr21 18294608 18294738 -26612832 + FLAM_C SINE Alu 4 131 -12 327 146 0 0 chr21 18294752 18294807 -26612763 + (A)n Simple_repeat Simple_repeat 1 55 0 367 238 126 13 chr21 18294807 18294958 -26612612 + L1M4 LINE L1 4651 4818 -1328 268 303 251 11 chr21 18295650 18295825 -26611745 - MIR SINE MIR -10 252 36 1390 105 16 89 chr21 18296260 18296508 -26611062 + MER30 DNA MER1_type 1 230 0 228 286 31 68 chr21 18296558 18296719 -26610851 + L2 LINE L2 3028 3182 -131 642 347 65 28 chr21 18296723 18297152 -26610418 - LTR16B LTR ERVL 0 464 20 184 333 83 0 chr21 18297179 18297275 -26610295 + L2 LINE L2 3169 3272 0 202 311 0 0 chr21 18299391 18299452 -26608118 - MIR SINE MIR -84 178 118 226 257 68 0 chr21 18299578 18299652 -26607918 + MLT1J LTR MaLR 8 86 -509 732 279 93 0 chr21 18299777 18299992 -26607578 + MLT1G LTR MaLR 356 590 0 450 286 49 105 chr21 18299994 18300068 -26607502 + MLT1J LTR MaLR 128 205 -306 2186 95 3 13 chr21 18300068 18300399 -26607171 - AluY SINE Alu 0 311 1 450 286 49 105 chr21 18300399 18300694 -26606876 + MLT1J LTR MaLR 205 476 -35 223 254 159 0 chr21 18300743 18300806 -26606764 - MIR SINE MIR -157 105 33 2889 93 37 9 chr21 18302258 18302297 -26605273 - MLT2A1 LTR ERVL 0 444 408 540 116 0 0 chr21 18302297 18302392 -26605178 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 2889 93 37 9 chr21 18302392 18302784 -26604786 - MLT2A1 LTR ERVL -36 408 1 2384 53 0 0 chr21 18302799 18303110 -26604460 - AluY SINE Alu 0 311 1 293 100 20 0 chr21 18303693 18303743 -26603827 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 54 0 0 chr21 18303937 18303974 -26603596 + AT_rich Low_complexity Low_complexity 1 37 0 229 400 9 9 chr21 18304944 18305049 -26602521 + MIR SINE MIR 34 138 -70 22 0 0 0 chr21 18305110 18305132 -26602438 + AT_rich Low_complexity Low_complexity 1 22 0 2182 107 16 0 chr21 18305196 18305504 -26602066 - AluSp SINE Alu 0 313 1 499 233 23 90 chr21 18306667 18306830 -26600740 + MLT1G LTR MaLR 1 119 -411 5344 218 76 40 chr21 18306830 18307055 -26600515 - L1MC3 LINE L1 -297 7906 7691 2230 69 0 0 chr21 18307055 18307329 -26600241 - AluY SINE Alu -3 308 35 5344 218 76 40 chr21 18307329 18308664 -26598906 - L1MC3 LINE L1 -512 7691 6289 3594 251 42 31 chr21 18308664 18310385 -26597185 - L1MC3 LINE L1 -746 5818 4308 24 0 0 0 chr21 18310425 18310449 -26597121 + AT_rich Low_complexity Low_complexity 1 24 0 405 0 0 0 chr21 18310449 18310494 -26597076 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 249 232 29 0 chr21 18310527 18310596 -26596974 - L1MC3 LINE L1 -2286 4278 4208 1076 281 84 21 chr21 18310606 18311459 -26596111 - L1MC3 LINE L1 -2576 3988 691 365 235 37 0 chr21 18311495 18311576 -26595994 + MER82 DNA MER2_type 60 143 -510 1523 239 18 51 chr21 18312061 18312509 -26595061 + MER82 DNA MER2_type 215 647 -6 1165 283 71 65 chr21 18312518 18312884 -26594686 - L1MC3 LINE L1 -5360 685 312 2065 151 0 0 chr21 18312884 18313188 -26594382 + AluSq SINE Alu 3 306 -7 1165 283 71 65 chr21 18313188 18313437 -26594133 - L1MC3 LINE L1 -5733 312 66 27 29 0 0 chr21 18313493 18313527 -26594043 + AT_rich Low_complexity Low_complexity 1 34 0 1579 261 4 41 chr21 18313597 18314061 -26593509 - LTR2 LTR ERV1 0 449 3 13485 150 12 1 chr21 18314063 18316213 -26591357 - Harlequin LTR ERV1 -1 6895 4721 9693 201 28 10 chr21 18316246 18318137 -26589433 - HERVE LTR ERV1 -5888 1925 1 1779 231 7 41 chr21 18318137 18318600 -26588970 - LTR2 LTR ERV1 0 449 3 365 298 107 25 chr21 18318739 18319102 -26588468 - L1ME3A LINE L1 -230 5940 5548 225 291 106 43 chr21 18319233 18319374 -26588196 + L1MC4a LINE L1 5631 5780 -2028 252 241 17 60 chr21 18319556 18319672 -26587898 + L1MC4a LINE L1 6083 6193 -1615 2445 37 0 17 chr21 18320253 18320550 -26587020 + AluY SINE Alu 1 292 -19 1081 242 4 17 chr21 18320789 18321055 -26586515 - AluJb SINE Alu 0 312 50 284 326 141 5 chr21 18322055 18322239 -26585331 - L3 LINE CR1 -115 1462 1254 1182 212 118 65 chr21 18322934 18323356 -26584214 + MER66A LTR ERV1 98 478 0 427 314 11 54 chr21 18323831 18324016 -26583554 + MIR SINE MIR 86 262 0 29 47 0 0 chr21 18324097 18324140 -26583430 + AT_rich Low_complexity Low_complexity 1 43 0 276 218 0 35 chr21 18324491 18324578 -26582992 + CT-rich Low_complexity Low_complexity 1 84 0 369 238 25 41 chr21 18326049 18326171 -26581399 + MER20 DNA MER1_type 99 218 -1 324 120 0 0 chr21 18326791 18326841 -26580729 + (CA)n Simple_repeat Simple_repeat 2 51 0 1299 193 96 43 chr21 18327271 18327645 -26579925 - MSTD LTR MaLR 0 396 3 192 284 75 82 chr21 18328164 18328298 -26579272 + L2 LINE L2 3104 3236 -36 866 154 13 98 chr21 18328670 18328904 -26578666 - L1MA8 LINE L1 -53 6238 6025 3184 197 10 13 chr21 18328924 18329194 -26578376 - L1MA8 LINE L1 -53 6238 5969 1278 233 38 10 chr21 18329194 18329482 -26578088 - AluJo SINE Alu -13 299 4 3184 197 10 13 chr21 18329482 18329891 -26577679 - L1MA8 LINE L1 -322 5969 5561 207 100 0 0 chr21 18330473 18330503 -26577067 + (TTA)n Simple_repeat Simple_repeat 2 31 0 958 163 0 0 chr21 18330505 18330658 -26576912 - FRAM SINE Alu -30 146 1 180 0 0 0 chr21 18330666 18330686 -26576884 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2154 135 0 0 chr21 18330696 18331008 -26576562 + AluSx SINE Alu 1 312 0 703 234 7 7 chr21 18331018 18331163 -26576407 + FRAM SINE Alu 1 145 -31 21 36 0 0 chr21 18332927 18332955 -26574615 + AT_rich Low_complexity Low_complexity 1 28 0 2458 41 3 3 chr21 18332955 18333250 -26574320 + AluY SINE Alu 1 295 -16 1505 173 78 33 chr21 18333423 18333782 -26573788 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr21 18334090 18334121 -26573449 + AT_rich Low_complexity Low_complexity 1 31 0 1265 261 18 5 chr21 18335539 18335938 -26571632 - L1MD3 LINE L1 -1 7994 7591 530 216 188 75 chr21 18336006 18336219 -26571351 + L1MC3 LINE L1 6572 6783 -1002 2228 246 118 71 chr21 18336229 18337009 -26570561 - L1MC3 LINE L1 -435 7560 6818 2429 71 0 0 chr21 18337009 18337317 -26570253 + AluY SINE Alu 1 308 -3 2228 246 118 71 chr21 18337317 18337576 -26569994 - L1MC3 LINE L1 -1177 6818 6573 2482 47 7 0 chr21 18337576 18337874 -26569696 - AluY SINE Alu -11 300 1 2228 246 118 71 chr21 18337874 18338203 -26569367 - L1MC3 LINE L1 -1422 6573 6092 436 384 21 12 chr21 18339094 18339336 -26568234 + L2 LINE L2 892 1135 -2179 33 73 0 0 chr21 18339505 18339573 -26567997 + AT_rich Low_complexity Low_complexity 1 68 0 297 229 64 0 chr21 18339813 18339922 -26567648 - LOR1-int LTR ERV1 -6698 1422 1307 3521 63 0 0 chr21 18339930 18340377 -26567193 - L1PA7 LINE L1 -7 6147 5701 514 46 0 0 chr21 18340377 18340442 -26567128 + L1PA7 LINE L1 5631 5695 -477 1656 187 30 0 chr21 18340769 18341103 -26566467 - L1MC1 LINE L1 -1 7763 6133 24 85 0 0 chr21 18341160 18341219 -26566351 + AT_rich Low_complexity Low_complexity 1 59 0 239 356 153 0 chr21 18341820 18341938 -26565632 - L2 LINE L2 0 3272 3137 1123 251 28 62 chr21 18344272 18344680 -26562890 - MLT1B LTR MaLR 0 593 1 961 52 0 15 chr21 18345443 18345577 -26561993 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 1282 206 49 31 chr21 18346175 18346461 -26561109 + MLT2B1 LTR ERVL 16 306 -214 25 0 0 0 chr21 18347312 18347337 -26560233 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 18347522 18347543 -26560027 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr21 18347616 18347664 -26559906 + AT_rich Low_complexity Low_complexity 1 48 0 2173 217 42 42 chr21 18348542 18348849 -26558721 + MLT2B1 LTR ERVL 1 310 -210 7999 162 106 31 chr21 18348849 18349297 -26558273 - MER52A LTR ERV1 0 1755 1342 2275 114 0 0 chr21 18349297 18349604 -26557966 - AluSq SINE Alu -6 307 1 7999 162 106 31 chr21 18349604 18350788 -26556782 - MER52A LTR ERV1 -413 1342 1 2173 217 42 42 chr21 18350788 18351000 -26556570 + MLT2B1 LTR ERVL 309 520 0 258 314 36 0 chr21 18352420 18352557 -26555013 - L1M4 LINE L1 -1874 4272 4131 2012 111 4 0 chr21 18352566 18352845 -26554725 - AluSg SINE Alu -11 299 20 734 73 29 15 chr21 18352959 18353095 -26554475 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 821 285 119 19 chr21 18353134 18353781 -26553789 + L1ME1 LINE L1 2177 2858 -3357 457 222 128 44 chr21 18353781 18353961 -26553609 + L1ME1 LINE L1 4354 4548 -1667 265 182 26 13 chr21 18353972 18354049 -26553521 + (TA)n Simple_repeat Simple_repeat 2 79 0 391 243 43 108 chr21 18354054 18354239 -26553331 + L1ME1 LINE L1 4565 4737 -1478 39 50 0 0 chr21 18354437 18354497 -26553073 + AT_rich Low_complexity Low_complexity 1 60 0 2279 131 16 22 chr21 18354831 18355197 -26552373 + THE1B LTR MaLR 1 364 0 11583 96 7 1 chr21 18355197 18356768 -26550802 + THE1B-int LTR MaLR 1 1580 0 2108 153 16 25 chr21 18356768 18357135 -26550435 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr21 18357345 18357369 -26550201 + AT_rich Low_complexity Low_complexity 1 24 0 1573 120 0 4 chr21 18357599 18357840 -26549730 - L1PA13 LINE L1 -4 6159 5920 1273 99 11 5 chr21 18357840 18358031 -26549539 + L1PA13 LINE L1 5728 5919 -249 2399 60 0 17 chr21 18358191 18358491 -26549079 - AluY SINE Alu -16 295 1 2662 237 19 38 chr21 18359422 18360191 -26547379 + L1ME1 LINE L1 5477 6231 -4 216 97 0 0 chr21 18360827 18360858 -26546712 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 624 164 27 9 chr21 18361167 18361277 -26546293 - FRAM SINE Alu -22 154 43 1918 177 5 18 chr21 18361882 18361931 -26545639 - L1MB3 LINE L1 -2 6181 6133 2397 130 67 24 chr21 18361931 18362347 -26545223 + MER57B LTR ERV1 1 434 0 1918 177 5 18 chr21 18362347 18362681 -26544889 - L1MB3 LINE L1 -50 6133 5803 2034 240 27 4 chr21 18362715 18363270 -26544300 - L1MB3 LINE L1 -837 5309 4742 347 147 133 0 chr21 18363269 18363344 -26544226 + L1M3 LINE L1 5350 5434 -749 * 8195 228 31 16 chr21 18363340 18366333 -26541237 + L1PA13 LINE L1 695 3755 -3042 201 39 0 0 chr21 18366333 18366359 -26541211 + (CAA)n Simple_repeat Simple_repeat 3 28 0 8195 228 31 16 chr21 18366359 18366594 -26540976 + L1PA13 LINE L1 3755 3985 -2812 1833 147 52 38 chr21 18366596 18366669 -26540901 + THE1C LTR MaLR 3 74 -301 5203 97 12 40 chr21 18366669 18367471 -26540099 - LTR17 LTR ERV1 0 780 1 1833 147 52 38 chr21 18367471 18367765 -26539805 + THE1C LTR MaLR 74 375 0 8425 150 66 11 chr21 18367765 18369263 -26538307 + THE1C-int LTR MaLR 1 1580 0 682 96 85 28 chr21 18369263 18369409 -26538161 + THE1B LTR MaLR 1 109 -255 412 297 67 68 chr21 18369412 18370609 -26536961 - L1MDb LINE L1 -4210 2051 819 747 311 156 27 chr21 18370634 18371262 -26536308 - L1MDb LINE L1 -5341 729 21 263 91 0 0 chr21 18371765 18371798 -26535772 - U2 snRNA snRNA -155 33 1 28 61 0 0 chr21 18372323 18372372 -26535198 + AT_rich Low_complexity Low_complexity 1 49 0 213 211 0 0 chr21 18372372 18372424 -26535146 + (TA)n Simple_repeat Simple_repeat 1 52 0 2961 272 59 53 chr21 18372483 18373051 -26534519 + L1MB8 LINE L1 17 580 -6279 2034 110 0 0 chr21 18373051 18373332 -26534238 + AluSg SINE Alu 30 310 0 2961 272 59 53 chr21 18373332 18373919 -26533651 + L1MB8 LINE L1 580 1179 -5680 398 270 51 89 chr21 18373923 18374238 -26533332 + L1MB8 LINE L1 2512 2814 -4324 1521 207 18 67 chr21 18374366 18374619 -26532951 + MER39 LTR ERV1 340 570 -137 1692 181 0 21 chr21 18374619 18374942 -26532628 - AluSx SINE Alu 0 319 3 1521 207 18 67 chr21 18374942 18375074 -26532496 + MER39 LTR ERV1 570 707 0 904 267 80 23 chr21 18375074 18375627 -26531943 + L1MB8 LINE L1 2813 3362 -3595 573 120 11 0 chr21 18375633 18375725 -26531845 + MLT2B2 LTR ERVL 5 97 -418 2779 161 26 6 chr21 18375772 18376268 -26531302 - MER84 LTR ERV1 0 507 2 450 111 42 14 chr21 18376268 18376340 -26531230 - MER84 LTR ERVI -433 74 1 541 203 110 0 chr21 18376343 18376461 -26531109 + MLT2B1 LTR ERVL 312 442 -78 209 57 29 0 chr21 18376496 18376531 -26531039 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1448 218 32 35 chr21 18376578 18377070 -26530500 + L1MB8 LINE L1 3371 3861 -3096 1261 191 131 3 chr21 18377070 18377352 -26530218 + MLT1B LTR MaLR 1 318 -72 1650 274 75 23 chr21 18377427 18378216 -26529354 + L1MB8 LINE L1 3858 4687 -2270 3071 226 69 39 chr21 18378231 18378799 -26528771 + L1MB8 LINE L1 4924 5473 -1516 1641 191 7 7 chr21 18378799 18379098 -26528472 + AluJo SINE Alu 6 304 -8 3071 226 69 39 chr21 18379098 18379937 -26527633 + L1MB8 LINE L1 5473 6410 -579 2358 68 13 0 chr21 18379937 18380244 -26527326 + AluY SINE Alu 1 311 0 3071 226 69 39 chr21 18380244 18380837 -26526733 + L1MB8 LINE L1 6410 6984 -5 436 189 189 42 chr21 18381329 18381348 -26526222 - MLT1H LTR MaLR -8 547 532 5551 134 13 4 chr21 18381348 18382349 -26525221 + L1PA15 LINE L1 5157 6165 0 436 189 189 42 chr21 18382349 18382541 -26525029 - MLT1H LTR MaLR -23 532 305 2070 134 22 22 chr21 18382551 18383148 -26524422 + MER4A LTR ERV1 1 465 0 709 313 4 13 chr21 18383148 18383375 -26524195 - MLT1H LTR MaLR -253 296 72 212 274 98 39 chr21 18385146 18385299 -26522271 + L2 LINE L2 3148 3309 -4 3460 64 21 13 chr21 18386681 18387150 -26520420 + L1PA10 LINE L1 5694 6166 -2 21 36 0 0 chr21 18387160 18387188 -26520382 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 18387251 18387282 -26520288 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 18389225 18389248 -26518322 + AT_rich Low_complexity Low_complexity 1 23 0 319 313 18 9 chr21 18389769 18389881 -26517689 + MER5C DNA MER1_type 4 116 -208 21 0 0 0 chr21 18390051 18390072 -26517498 + AT_rich Low_complexity Low_complexity 1 21 0 259 303 97 71 chr21 18391048 18391470 -26516100 + L1M4 LINE L1 3787 4219 -1927 492 338 103 23 chr21 18391632 18392108 -26515462 + L1M4 LINE L1 4502 5015 -1131 1318 256 24 81 chr21 18392108 18392690 -26514880 + L1MC4 LINE L1 6530 7078 -964 245 306 74 16 chr21 18392728 18392849 -26514721 + L1MC4a LINE L1 7235 7362 -446 22 56 0 0 chr21 18392909 18392945 -26514625 + AT_rich Low_complexity Low_complexity 1 36 0 451 249 150 31 chr21 18392989 18393282 -26514288 + L1MC4 LINE L1 7584 7911 -131 203 200 67 0 chr21 18393285 18393330 -26514240 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 317 217 65 51 chr21 18393336 18393474 -26514096 + L1MC4 LINE L1 7902 8041 -1 387 329 21 25 chr21 18393529 18393766 -26513804 - LTR16A1 LTR ERVL -15 442 207 243 0 0 0 chr21 18394097 18394124 -26513446 + (TG)n Simple_repeat Simple_repeat 1 27 0 7741 13 0 0 chr21 18394838 18396180 -26511390 - L1PA2 LINE L1 -2 6153 4814 8293 112 7 24 chr21 18396181 18397051 -26510519 + HSMAR1 DNA Mariner 96 941 -346 2272 87 3 3 chr21 18397051 18397360 -26510210 + AluY SINE Alu 1 309 -2 8293 112 7 24 chr21 18397360 18397702 -26509868 + HSMAR1 DNA Mariner 941 1287 0 208 143 0 0 chr21 18397802 18397837 -26509733 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr21 18398194 18398233 -26509337 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr21 18398783 18398818 -26508752 + AT_rich Low_complexity Low_complexity 1 35 0 352 325 58 21 chr21 18399056 18399435 -26508135 + L1ME4a LINE L1 5541 5933 -188 1518 154 65 94 chr21 18399662 18400064 -26507506 - MLT1B LTR MaLR 0 390 1 549 324 110 0 chr21 18400289 18400508 -26507062 + MIR SINE MIR 8 250 -12 193 311 33 0 chr21 18400720 18400781 -26506789 + MIR SINE MIR 79 141 -67 294 29 0 0 chr21 18401532 18401567 -26506003 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr21 18401732 18401761 -26505809 + AT_rich Low_complexity Low_complexity 1 29 0 613 250 134 55 chr21 18401846 18402006 -26505564 + LTR33 LTR ERVL 1 147 -374 1369 195 19 73 chr21 18402006 18402416 -26505154 + MLT1B LTR MaLR 1 388 -2 613 250 134 55 chr21 18402416 18402547 -26505023 + LTR33 LTR ERVL 147 315 -206 1954 108 0 21 chr21 18402700 18402979 -26504591 - AluSq SINE Alu -17 296 24 233 231 48 19 chr21 18403061 18403165 -26504405 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 2316 129 11 24 chr21 18403317 18403697 -26503873 + THE1C LTR MaLR 1 375 0 2168 92 3 10 chr21 18404456 18404748 -26502822 + AluSq SINE Alu 13 302 -11 343 277 131 24 chr21 18407281 18407487 -26500083 - MIR SINE MIR -10 252 25 1873 110 0 0 chr21 18407569 18407833 -26499737 + AluSc SINE Alu 43 306 -3 1141 253 67 36 chr21 18407877 18408323 -26499247 - L1ME1 LINE L1 -4 6162 5703 453 205 0 0 chr21 18408409 18408521 -26499049 + (TA)n Simple_repeat Simple_repeat 1 112 0 321 158 18 0 chr21 18408524 18408581 -26498989 - L1MCa LINE L1 -4363 2063 2006 991 262 15 32 chr21 18408586 18409196 -26498374 - L1ME1 LINE L1 -531 5590 4995 1789 167 7 3 chr21 18409258 18409558 -26498012 - AluJo SINE Alu -11 301 1 653 238 106 87 chr21 18409575 18409968 -26497602 + MLT2C1 LTR ERVL 1 413 -1 449 238 18 114 chr21 18409971 18410077 -26497493 - L1ME1 LINE L1 -1230 4916 4842 2292 59 3 0 chr21 18410077 18410363 -26497207 - AluY SINE Alu -24 287 1 449 238 18 114 chr21 18410363 18410483 -26497087 - L1ME1 LINE L1 -1304 4842 4712 325 286 223 0 chr21 18410828 18411034 -26496536 + L1MEc LINE L1 1642 1893 -4503 542 284 33 16 chr21 18411595 18411778 -26495792 - MER5A DNA MER1_type 0 189 4 904 203 173 5 chr21 18411860 18412062 -26495508 + MER8 DNA MER2_type 2 237 -2 2183 166 11 82 chr21 18412089 18412612 -26494958 - MER101B LTR ERV1 0 570 85 23 0 0 0 chr21 18413245 18413268 -26494302 + AT_rich Low_complexity Low_complexity 1 23 0 2156 113 3 0 chr21 18413620 18413922 -26493648 - AluSx SINE Alu -9 303 1 186 43 0 0 chr21 18414040 18414063 -26493507 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr21 18414357 18414380 -26493190 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 18414483 18414508 -26493062 + AT_rich Low_complexity Low_complexity 1 25 0 2371 156 32 28 chr21 18415722 18416153 -26491417 - Tigger2a DNA MER2_type -1 433 1 209 374 80 59 chr21 18416681 18417130 -26490440 + L2 LINE L2 2028 2466 -848 2207 102 3 0 chr21 18417130 18417424 -26490146 - AluSx SINE Alu -17 295 1 209 374 80 59 chr21 18417424 18417905 -26489665 + L2 LINE L2 2466 2977 -337 654 224 33 6 chr21 18418045 18418228 -26489342 + MER53 DNA DNA 2 189 0 2645 20 0 0 chr21 18418331 18418629 -26488941 + AluY SINE Alu 1 298 -13 1978 251 90 40 chr21 18419035 18419998 -26487572 - L1ME1 LINE L1 -5 6161 5153 2535 105 36 10 chr21 18420475 18420865 -26486705 + MLT2A1 LTR ERVL 1 400 -44 201 117 50 0 chr21 18420872 18420932 -26486638 + (TA)n Simple_repeat Simple_repeat 1 63 0 331 125 0 0 chr21 18420949 18420997 -26486573 + MLT2A1 LTR ERVL 473 520 0 17530 82 3 1 chr21 18420997 18423283 -26484287 + HERVL-A1 LTR ERVL 1 2290 -3364 388 219 27 96 chr21 18423293 18423617 -26483953 + LTR1 LTR ERV1 109 554 -466 342 294 20 39 chr21 18423611 18423764 -26483806 + LTR28 LTR ERV1 864 1013 -7 * 216 0 0 0 chr21 18424354 18424378 -26483192 + (A)n Simple_repeat Simple_repeat 1 24 0 312 356 78 15 chr21 18424617 18424822 -26482748 - MIR SINE MIR -44 218 1 22 35 0 0 chr21 18425277 18425306 -26482264 + AT_rich Low_complexity Low_complexity 1 29 0 218 176 20 0 chr21 18425324 18425375 -26482195 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 56 0 0 chr21 18426045 18426081 -26481489 + AT_rich Low_complexity Low_complexity 1 36 0 625 335 105 34 chr21 18426524 18427005 -26480565 - L2 LINE L2 -276 3037 2523 1187 320 93 51 chr21 18427108 18428195 -26479375 - L2 LINE L2 0 3313 2161 275 235 0 0 chr21 18428196 18428247 -26479323 - L2 LINE L2 -2068 1246 1196 306 73 0 0 chr21 18428362 18428403 -26479167 + (T)n Simple_repeat Simple_repeat 1 41 0 530 191 25 96 chr21 18428814 18428971 -26478599 + MER49 LTR ERV1 5 150 -773 396 278 20 24 chr21 18428938 18429103 -26478467 + MER49 LTR ERV1 471 623 -99 * 380 139 38 63 chr21 18429079 18429158 -26478412 + MER72 LTR ERV1 646 722 0 * 216 122 0 0 chr21 18429245 18429286 -26478284 + (TG)n Simple_repeat Simple_repeat 2 42 0 1424 134 0 27 chr21 18429790 18430014 -26477556 - MER1B DNA MER1_type -2 337 120 290 26 26 0 chr21 18430014 18430022 -26477548 + (TG)n Simple_repeat Simple_repeat 1 48 0 290 26 26 0 chr21 18430022 18430061 -26477509 + (TG)n Simple_repeat Simple_repeat 2 41 0 341 173 0 13 chr21 18430143 18430218 -26477352 + (TA)n Simple_repeat Simple_repeat 1 74 0 16183 170 47 11 chr21 18430218 18436488 -26471082 - L1P5 LINE L1 -360 6507 3 405 229 70 38 chr21 18436563 18436720 -26470850 + L1ME3 LINE L1 6000 6161 -1 459 330 44 35 chr21 18436845 18437048 -26470522 + MIR SINE MIR 47 251 -11 21 57 0 0 chr21 18437172 18437207 -26470363 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr21 18437539 18437573 -26469997 + AT_rich Low_complexity Low_complexity 1 34 0 2227 97 7 0 chr21 18437590 18437889 -26469681 - AluSg SINE Alu -9 301 1 552 214 8 0 chr21 18437897 18438014 -26469556 + L1PA16 LINE L1 6048 6165 -1 1843 205 32 3 chr21 18439019 18439366 -26468204 - MLT1A1 LTR MaLR 0 365 9 565 316 87 0 chr21 18439485 18439716 -26467854 - MLT1I LTR MaLR 0 409 159 206 363 49 20 chr21 18439852 18439954 -26467616 - MIR3 SINE MIR -36 172 68 211 398 44 0 chr21 18440799 18440912 -26466658 + MIR3 SINE MIR 43 160 -48 967 365 58 28 chr21 18441464 18442252 -26465318 - HERVL LTR ERVL -2257 3397 2622 2353 54 10 3 chr21 18442252 18442548 -26465022 + AluY SINE Alu 1 298 -13 967 365 58 28 chr21 18442548 18442636 -26464934 - HERVL LTR ERVL -3032 2622 2538 1972 85 27 0 chr21 18444822 18445080 -26462490 + AluY SINE Alu 33 297 -14 366 23 0 0 chr21 18445696 18445739 -26461831 + (TG)n Simple_repeat Simple_repeat 2 44 0 2402 77 1 0 chr21 18445882 18446782 -26460788 - L1P LINE L1 -2515 3631 2551 4216 62 4 0 chr21 18446782 18447349 -26460221 + L1PA6 LINE L1 5605 6173 0 24 32 0 0 chr21 18447406 18447437 -26460133 + AT_rich Low_complexity Low_complexity 1 31 0 977 138 33 6 chr21 18447470 18447651 -26459919 + L1MA4 LINE L1 6109 6294 -6 23 0 0 0 chr21 18447693 18447716 -26459854 + AT_rich Low_complexity Low_complexity 1 23 0 1072 162 128 0 chr21 18447717 18447921 -26459649 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr21 18447960 18447988 -26459582 + AT_rich Low_complexity Low_complexity 1 28 0 1061 143 7 0 chr21 18448341 18448519 -26459051 - AluSg/x SINE Alu 0 310 132 2388 74 0 16 chr21 18448520 18448832 -26458738 - AluY SINE Alu -4 307 1 1553 156 3 88 chr21 18450436 18450756 -26456814 - MER4A LTR ERV1 0 664 372 599 139 0 30 chr21 18450808 18450909 -26456661 - MER4A LTR ERV1 -566 98 1 2567 83 53 6 chr21 18451340 18451700 -26455870 + MER51B LTR ERV1 1 377 0 267 312 40 87 chr21 18451996 18452071 -26455499 + L2 LINE L2 271 348 -2966 1887 123 3 40 chr21 18452071 18452371 -26455199 - AluY SINE Alu -22 289 1 267 312 40 87 chr21 18452371 18452468 -26455102 + L2 LINE L2 348 435 -2879 21 0 0 0 chr21 18452602 18452623 -26454947 + AT_rich Low_complexity Low_complexity 1 21 0 234 341 165 21 chr21 18452847 18453181 -26454389 + L2 LINE L2 1689 2070 -1244 296 47 0 23 chr21 18453269 18453312 -26454258 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 311 66 49 chr21 18453331 18453453 -26454117 + L2 LINE L2 2222 2345 -969 613 81 0 0 chr21 18453455 18453541 -26454029 + MSTB1 LTR MaLR 1 86 -346 23 68 0 0 chr21 18454521 18454565 -26453005 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr21 18454783 18454827 -26452743 + AT_rich Low_complexity Low_complexity 1 44 0 295 215 25 51 chr21 18455005 18455084 -26452486 - MER3 DNA MER1_type -132 77 1 23 0 0 0 chr21 18455140 18455163 -26452407 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr21 18455635 18455686 -26451884 + AT_rich Low_complexity Low_complexity 1 51 0 570 222 48 113 chr21 18455744 18456186 -26451384 - MER57A LTR ERV1 0 403 6 246 196 20 0 chr21 18456467 18456518 -26451052 + L2 LINE L2 3261 3312 -1 205 277 60 24 chr21 18456895 18456978 -26450592 + MIR SINE MIR 75 160 -102 23 0 0 0 chr21 18457305 18457328 -26450242 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr21 18458280 18458303 -26449267 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 18458879 18458907 -26448663 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 18459100 18459144 -26448426 + AT_rich Low_complexity Low_complexity 1 44 0 27 62 0 0 chr21 18459194 18459242 -26448328 + AT_rich Low_complexity Low_complexity 1 48 0 430 229 31 0 chr21 18459256 18459352 -26448218 - AluJo SINE Alu -26 286 188 802 178 0 15 chr21 18459370 18459505 -26448065 - AluJo SINE Alu -169 133 1 330 115 0 0 chr21 18459536 18459588 -26447982 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 2029 135 10 3 chr21 18459588 18459891 -26447679 - AluSx SINE Alu -7 305 1 34 0 0 0 chr21 18460277 18460311 -26447259 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr21 18460359 18460395 -26447175 + AT_rich Low_complexity Low_complexity 1 36 0 349 24 0 0 chr21 18461056 18461097 -26446473 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1760 73 0 9 chr21 18461097 18461330 -26446240 - AluSx SINE Alu -1 322 52 444 240 110 7 chr21 18462186 18462340 -26445230 + HAL1 LINE L1 1550 1719 -788 324 263 57 43 chr21 18462659 18462868 -26444702 + HAL1 LINE L1 2296 2507 0 318 308 148 35 chr21 18463035 18463204 -26444366 - HAL1b LINE L1 -761 587 400 43 20 0 0 chr21 18463643 18463693 -26443877 + AT_rich Low_complexity Low_complexity 1 50 0 1944 95 7 28 chr21 18465243 18465564 -26442006 + AluSc SINE Alu 2 316 0 181 298 96 0 chr21 18465897 18466001 -26441569 - MER5C DNA MER1_type -175 149 36 2014 163 27 57 chr21 18466485 18466926 -26440644 + MSTC LTR MaLR 1 428 0 28 29 0 0 chr21 18467027 18467062 -26440508 + AT_rich Low_complexity Low_complexity 1 35 0 1806 161 96 27 chr21 18467233 18467638 -26439932 - Tigger2a DNA MER2_type 0 434 2 2123 80 40 0 chr21 18467895 18468171 -26439399 + AluY SINE Alu 1 287 -24 294 73 0 0 chr21 18468171 18468212 -26439358 + (TA)n Simple_repeat Simple_repeat 1 41 0 185 206 0 0 chr21 18468393 18468427 -26439143 - L2 LINE L2 -309 2963 2930 21 0 0 0 chr21 18468629 18468650 -26438920 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr21 18468917 18468944 -26438626 + AT_rich Low_complexity Low_complexity 1 27 0 365 297 248 0 chr21 18469185 18469330 -26438240 + MER5A DNA MER1_type 9 189 0 1677 306 59 38 chr21 18469386 18470367 -26437203 + L1PBa LINE L1 -656 345 -5859 962 258 14 21 chr21 18470383 18470960 -26436610 + L1PBa LINE L1 1 994 -5210 1587 174 177 11 chr21 18470960 18471327 -26436243 - MSTA LTR MaLR 0 428 1 8014 136 16 118 chr21 18471327 18473084 -26434486 - MSTA-int LTR MaLR 0 1580 3 4209 190 41 14 chr21 18473325 18474451 -26433119 + L1PB3 LINE L1 215 1309 -4894 2129 153 16 11 chr21 18474451 18474824 -26432746 + THE1C LTR MaLR 1 375 0 4209 190 41 14 chr21 18474824 18475014 -26432556 + L1PB3 LINE L1 1309 3355 -2848 503 147 0 86 chr21 18475020 18475136 -26432434 + MER50 LTR ERV1 499 604 -130 8386 190 8 37 chr21 18475140 18476002 -26431568 + L1PB3 LINE L1 3346 4232 -1979 7176 49 1 0 chr21 18476002 18477432 -26430138 - L1PA5 LINE L1 0 6154 4724 8386 190 8 37 chr21 18477432 18479526 -26428044 + L1PB3 LINE L1 4232 6204 -7 24 0 0 0 chr21 18479529 18479553 -26428017 + AT_rich Low_complexity Low_complexity 1 24 0 714 229 86 6 chr21 18479719 18479894 -26427676 + MER5A DNA MER1_type 1 189 0 315 146 0 0 chr21 18480369 18480424 -26427146 + (TA)n Simple_repeat Simple_repeat 2 56 0 2414 97 0 0 chr21 18480567 18480876 -26426694 + AluSx SINE Alu 1 309 -3 2173 47 32 0 chr21 18480933 18481212 -26426358 + L1PA3 LINE L1 5868 6155 0 23 0 0 0 chr21 18482168 18482191 -26425379 + AT_rich Low_complexity Low_complexity 1 23 0 258 56 0 0 chr21 18483823 18483859 -26423711 + (GA)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr21 18484062 18484085 -26423485 + AT_rich Low_complexity Low_complexity 1 23 0 222 105 0 0 chr21 18484764 18484802 -26422768 + (A)n Simple_repeat Simple_repeat 1 38 0 28 61 0 0 chr21 18484943 18484992 -26422578 + AT_rich Low_complexity Low_complexity 1 49 0 253 333 79 44 chr21 18485404 18485632 -26421938 - L2 LINE L2 -418 2896 2661 1373 228 77 112 chr21 18485636 18485920 -26421650 + MLT1E1 LTR MaLR 2 295 -359 1854 193 62 31 chr21 18485920 18486339 -26421231 - MSTB1 LTR MaLR 0 432 1 1373 228 77 112 chr21 18486339 18486731 -26420839 + MLT1E1 LTR MaLR 295 654 0 238 319 0 21 chr21 18487480 18487574 -26419996 + MIR SINE MIR 78 169 -93 371 214 91 10 chr21 18487875 18488058 -26419512 + MLT1E3 LTR MaLR 62 239 -385 857 201 22 112 chr21 18488109 18488329 -26419241 + MLT1E3 LTR MaLR 380 573 -51 1908 234 74 10 chr21 18488329 18488371 -26419199 - MLT2B2 LTR ERVL 0 515 477 246 81 0 0 chr21 18488371 18488408 -26419162 + (CA)n Simple_repeat Simple_repeat 2 38 0 1908 234 74 10 chr21 18488408 18488849 -26418721 - MLT2B2 LTR ERVL -38 477 1 857 201 22 112 chr21 18488849 18488897 -26418673 + MLT1E3 LTR MaLR 573 624 0 198 360 22 7 chr21 18488905 18489044 -26418526 + L2 LINE L2 2238 2378 -936 189 420 130 0 chr21 18489531 18489662 -26417908 + L2 LINE L2 3123 3270 -2 429 276 31 0 chr21 18490362 18490489 -26417081 + L1MD1 LINE L1 6060 6190 -52 4736 184 24 8 chr21 18490494 18491729 -26415841 - L1PB4 LINE L1 -8 6148 4892 867 284 141 72 chr21 18491777 18491976 -26415594 + L2 LINE L2 1764 1948 -1366 2222 94 0 13 chr21 18491976 18492274 -26415296 - AluSc SINE Alu -13 296 3 867 284 141 72 chr21 18492274 18492777 -26414793 + L2 LINE L2 1948 2514 -800 322 284 21 21 chr21 18493842 18493937 -26413633 + L2 LINE L2 2530 2624 -690 2107 102 0 24 chr21 18494049 18494344 -26413226 + AluSc SINE Alu 1 288 -21 1830 132 14 7 chr21 18494449 18494744 -26412826 + AluSg SINE Alu 2 298 -12 199 328 153 0 chr21 18494997 18495128 -26412442 + L2 LINE L2 3159 3309 -4 28 29 0 0 chr21 18495141 18495176 -26412394 + AT_rich Low_complexity Low_complexity 1 35 0 319 207 109 35 chr21 18495866 18496040 -26411530 + HAL1 LINE L1 950 1136 -1371 343 290 30 59 chr21 18496217 18496386 -26411184 + HAL1 LINE L1 1399 1562 -945 352 249 96 74 chr21 18496476 18496829 -26410741 + HAL1 LINE L1 1988 2348 -159 337 316 137 13 chr21 18497664 18497898 -26409672 + MLT1H LTR MaLR 29 291 -258 664 246 9 62 chr21 18497962 18498248 -26409322 - MLT-int LTR MaLR -777 874 611 2380 46 7 10 chr21 18498248 18498552 -26409018 - AluY SINE Alu -8 303 1 203 211 39 31 chr21 18499436 18499564 -26408006 + CT-rich Low_complexity Low_complexity 4 132 0 1649 264 29 3 chr21 18500526 18500905 -26406665 + MER70A LTR ERVL 1 389 -83 267 181 208 14 chr21 18500892 18500964 -26406606 - MLT1A1 LTR MaLR -279 86 1 * 425 200 8 58 chr21 18501046 18501166 -26406404 - MLT1C LTR MaLR -353 114 1 22 56 0 0 chr21 18501167 18501203 -26406367 + AT_rich Low_complexity Low_complexity 1 36 0 195 241 69 17 chr21 18501286 18501344 -26406226 - MIR3 SINE MIR -28 180 120 763 41 0 0 chr21 18501507 18501605 -26405965 - L1PA4 LINE L1 0 6155 6058 209 243 14 14 chr21 18502625 18502695 -26404875 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 932 270 139 22 chr21 18502791 18503203 -26404367 - MLT1D LTR MaLR -39 466 1 307 252 36 27 chr21 18503208 18503319 -26404251 - L1MC4 LINE L1 -173 7869 7758 382 202 12 0 chr21 18503333 18503413 -26404157 - MER96B DNA MER1_type? -192 225 145 1493 194 47 26 chr21 18503413 18503753 -26403817 - MLT1A1 LTR MaLR 0 365 19 535 224 97 0 chr21 18503766 18503900 -26403670 - MER96B DNA MER1_type? -270 147 1 1570 265 110 35 chr21 18503900 18504783 -26402787 - L1MC4 LINE L1 -300 7742 6794 403 287 76 12 chr21 18504780 18505140 -26402430 - L1MDb LINE L1 -4853 1972 1438 * 348 301 31 49 chr21 18505151 18505314 -26402256 - L1MDb LINE L1 -5031 1616 1457 248 200 78 78 chr21 18505335 18505425 -26402145 - L1MDb LINE L1 -5437 1109 1020 342 362 60 37 chr21 18505667 18505965 -26401605 - L1MDb LINE L1 -5760 874 570 307 369 28 11 chr21 18506461 18506640 -26400930 - MIR SINE MIR -30 232 51 2272 50 3 7 chr21 18506923 18507220 -26400350 + AluY SINE Alu 1 296 -15 249 116 43 0 chr21 18507222 18507291 -26400279 + (TA)n Simple_repeat Simple_repeat 2 73 0 286 328 169 5 chr21 18507385 18507627 -26399943 - L2 LINE L2 -281 3032 2753 726 291 82 73 chr21 18509450 18509941 -26397629 + Charlie2 DNA MER1_type 95 589 -2193 410 310 130 49 chr21 18510150 18510495 -26397075 + L2 LINE L2 2511 2883 -431 192 340 29 29 chr21 18511732 18511835 -26395735 + MIR SINE MIR 126 228 -34 258 311 0 0 chr21 18511927 18512001 -26395569 + L2 LINE L2 3235 3308 -5 24 67 0 0 chr21 18512600 18512645 -26394925 + AT_rich Low_complexity Low_complexity 1 45 0 28 61 0 0 chr21 18512713 18512762 -26394808 + AT_rich Low_complexity Low_complexity 1 49 0 902 261 59 63 chr21 18514849 18514876 -26392694 + L1MD1 LINE L1 19 45 -6378 2424 232 4 22 chr21 18514876 18515427 -26392143 - MER87 LTR ERV1 0 541 1 902 261 59 63 chr21 18515427 18515858 -26391712 + L1MD1 LINE L1 45 475 -5948 381 22 0 0 chr21 18516262 18516308 -26391262 + (CA)n Simple_repeat Simple_repeat 2 47 0 777 235 92 89 chr21 18516308 18516523 -26391047 + L1MD1 LINE L1 4482 4695 -2246 1892 144 14 0 chr21 18516523 18516807 -26390763 + AluSx SINE Alu 1 288 -24 777 235 92 89 chr21 18516807 18517145 -26390425 + L1MD1 LINE L1 4695 5040 -1901 2400 194 95 28 chr21 18517159 18517772 -26389798 + L1MD1 LINE L1 6366 7019 -18 7902 17 0 0 chr21 18517922 18519388 -26388182 - L1HS LINE L1 -2 6153 4688 4741 20 0 0 chr21 18519382 18519941 -26387629 + L1P LINE L1 4177 4735 -1411 * 25 0 0 0 chr21 18520160 18520185 -26387385 + AT_rich Low_complexity Low_complexity 1 25 0 2174 113 27 0 chr21 18520545 18520880 -26386690 - L1PA15 LINE L1 -196 5969 5626 1281 112 5 0 chr21 18520880 18521066 -26386504 + L1PA15 LINE L1 5973 6160 -5 344 22 22 0 chr21 18521714 18521759 -26385811 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 420 169 14 0 chr21 18521774 18521845 -26385725 - L1PA8 LINE L1 -200 5972 5901 769 285 55 29 chr21 18522261 18522535 -26385035 + MLT1I LTR MaLR 117 397 -12 24 0 0 0 chr21 18522660 18522684 -26384886 + AT_rich Low_complexity Low_complexity 1 24 0 555 308 67 24 chr21 18523095 18523348 -26384222 + L1MCb LINE L1 1 264 -5781 3757 74 328 0 chr21 18523351 18523973 -26383597 + LTR12 LTR ERV1 1 826 0 1442 273 50 11 chr21 18523973 18524516 -26383054 + L1MCb LINE L1 960 1523 -5041 1751 154 197 7 chr21 18524768 18525184 -26382386 + LTR54B LTR ERV1 3 497 -1 219 349 0 0 chr21 18527412 18527478 -26380092 + L2 LINE L2 343 408 -2906 21 0 0 0 chr21 18528045 18528066 -26379504 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr21 18528515 18528545 -26379025 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2056 115 0 3 chr21 18528683 18528978 -26378592 - AluSg SINE Alu -16 294 1 203 79 26 0 chr21 18530404 18530442 -26377128 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 41 72 0 0 chr21 18530866 18530949 -26376621 + AT_rich Low_complexity Low_complexity 1 83 0 28 29 0 0 chr21 18531102 18531137 -26376433 + AT_rich Low_complexity Low_complexity 1 35 0 850 233 72 40 chr21 18531382 18531730 -26375840 - LTR25 LTR ERV1 -21 773 415 261 180 180 0 chr21 18531701 18531762 -26375808 - MER51A LTR ERV1 -354 280 209 * 234 254 0 15 chr21 18531755 18531822 -26375748 - LTR27 LTR ERV1 -418 218 153 * 394 175 62 0 chr21 18531955 18532035 -26375535 - MER61E LTR ERV1 -484 85 1 331 331 65 56 chr21 18532211 18532251 -26375319 - MLT1J LTR MaLR -48 463 425 575 97 0 11 chr21 18532251 18532344 -26375226 + (TA)n Simple_repeat Simple_repeat 2 93 0 331 331 65 56 chr21 18532344 18532626 -26374944 - MLT1J LTR MaLR -86 425 138 272 179 0 24 chr21 18532632 18532716 -26374854 + (TATAA)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr21 18532792 18532815 -26374755 + AT_rich Low_complexity Low_complexity 1 23 0 1042 160 17 0 chr21 18532846 18533021 -26374549 + MER82 DNA MER2_type 54 231 -422 279 54 0 0 chr21 18533421 18533458 -26374112 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr21 18533507 18533528 -26374042 + AT_rich Low_complexity Low_complexity 1 21 0 233 125 0 0 chr21 18533831 18533863 -26373707 - MER70A LTR ERVL 0 472 441 * 2059 234 55 4 chr21 18533861 18534314 -26373256 - MER70B LTR ERVL -102 476 1 29 28 0 0 chr21 18535125 18535161 -26372409 + AT_rich Low_complexity Low_complexity 1 36 0 238 165 63 0 chr21 18535286 18535365 -26372205 + GA-rich Low_complexity Low_complexity 2 85 0 446 123 0 14 chr21 18535732 18535805 -26371765 - L1PA14 LINE L1 -28 6133 6062 1317 147 4 4 chr21 18535805 18536056 -26371514 + L1P LINE L1 5128 5378 -768 3845 218 77 63 chr21 18536595 18537651 -26369919 + MLT1A1-int LTR MaLR 666 1735 0 948 251 97 29 chr21 18537651 18537993 -26369577 + MLT1A1 LTR MaLR 1 365 0 231 352 140 34 chr21 18538619 18539363 -26368207 + L2 LINE L2 602 1424 -1890 2263 81 3 0 chr21 18540323 18540618 -26366952 - AluSp SINE Alu -17 296 1 2232 97 10 3 chr21 18541295 18541603 -26365967 - AluSx SINE Alu -2 310 1 262 161 71 0 chr21 18541751 18541807 -26365763 + MLT1J1 LTR MaLR 385 444 -2 24 91 0 0 chr21 18542128 18542194 -26365376 + AT_rich Low_complexity Low_complexity 1 66 0 192 152 0 0 chr21 18543333 18543366 -26364204 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 33 43 0 0 chr21 18543583 18543630 -26363940 + AT_rich Low_complexity Low_complexity 1 47 0 2183 94 0 0 chr21 18544542 18544961 -26362609 + AluSq SINE Alu 2 420 0 257 267 78 43 chr21 18545035 18545151 -26362419 + LTR33 LTR ERVL 41 160 -361 237 260 68 89 chr21 18545860 18546006 -26361564 - MIR SINE MIR -16 246 104 249 108 0 0 chr21 18546620 18546657 -26360913 + (CA)n Simple_repeat Simple_repeat 2 38 0 280 254 0 28 chr21 18547257 18547328 -26360242 - MER45 DNA AcHobo -33 1548 1480 522 0 0 0 chr21 18547962 18548020 -26359550 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 408 20 0 0 chr21 18548911 18548960 -26358610 + (CA)n Simple_repeat Simple_repeat 2 50 0 191 299 39 39 chr21 18549423 18549500 -26358070 + L2 LINE L2 3190 3266 -47 1055 157 47 51 chr21 18549654 18549890 -26357680 - AluJo SINE Alu -24 288 54 23 0 0 0 chr21 18550037 18550060 -26357510 + AT_rich Low_complexity Low_complexity 1 23 0 10106 186 29 17 chr21 18550071 18553372 -26354198 - L1MA5 LINE L1 -2 7360 4025 13402 122 9 2 chr21 18553386 18556217 -26351353 - L1PA8A LINE L1 0 6131 3273 3072 166 5 7 chr21 18556218 18556791 -26350779 + L1PA8A LINE L1 2681 3252 -2894 1277 224 40 95 chr21 18556785 18557259 -26350311 - L1MA5 LINE L1 -3172 4036 3589 * 1788 148 22 0 chr21 18557271 18557542 -26350028 - AluSx SINE Alu -13 299 23 6153 228 52 55 chr21 18557542 18557712 -26349858 - L1MA5 LINE L1 -3798 3410 3241 1824 149 7 0 chr21 18557712 18558014 -26349556 + AluSx SINE Alu 4 307 0 6153 228 52 55 chr21 18558014 18558999 -26348571 - L1MA5 LINE L1 -3967 3241 2255 2256 176 26 9 chr21 18558999 18559420 -26348150 - MSTA LTR MaLR 0 428 1 6153 228 52 55 chr21 18559420 18560794 -26346776 - L1MA5 LINE L1 -4953 2255 1 818 291 68 16 chr21 18561058 18561381 -26346189 + MER93a LTR ERV1 61 400 -2 328 313 71 75 chr21 18561493 18562030 -26345540 - L1M4 LINE L1 -1331 4815 4281 22 80 0 0 chr21 18562297 18562347 -26345223 + AT_rich Low_complexity Low_complexity 1 50 0 2154 68 20 10 chr21 18562518 18562812 -26344758 - AluY SINE Alu -14 297 1 23 0 0 0 chr21 18563513 18563536 -26344034 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 18563597 18563618 -26343952 + AT_rich Low_complexity Low_complexity 1 21 0 589 222 45 17 chr21 18565889 18566065 -26341505 + MER53 DNA DNA 9 189 0 694 204 0 8 chr21 18567077 18567209 -26340361 + FLAM_C SINE Alu 1 131 -12 31 26 0 0 chr21 18567210 18567248 -26340322 + AT_rich Low_complexity Low_complexity 1 38 0 1663 185 11 0 chr21 18567737 18568023 -26339547 - AluJb SINE Alu -17 295 7 444 182 21 118 chr21 18568264 18568451 -26339119 - MER112 DNA MER1_type -84 176 8 647 281 6 6 chr21 18568557 18568724 -26338846 - MIR SINE MIR -44 218 52 27 29 0 0 chr21 18569172 18569206 -26338364 + AT_rich Low_complexity Low_complexity 1 34 0 2091 111 0 29 chr21 18569260 18569566 -26338004 - AluSq SINE Alu -16 297 1 200 326 11 86 chr21 18569837 18570012 -26337558 - MIR SINE MIR -91 171 10 3648 188 116 33 chr21 18571726 18572581 -26334989 - MER21A LTR ERV1 0 931 6 2410 75 13 0 chr21 18572627 18572964 -26334606 + AluSp SINE Alu 2 342 0 609 282 106 46 chr21 18573703 18574461 -26333109 + L1M4 LINE L1 2299 3101 -3045 408 20 0 0 chr21 18574484 18574533 -26333037 + (CA)n Simple_repeat Simple_repeat 2 50 0 643 322 134 44 chr21 18574845 18575501 -26332069 + L1M4 LINE L1 3543 4272 -1874 1343 171 66 58 chr21 18575743 18576105 -26331465 - MLT1A1 LTR MaLR 0 365 1 3947 170 80 17 chr21 18576603 18577349 -26330221 + MER54B LTR ERVL 1 793 0 29 0 0 0 chr21 18579292 18579321 -26328249 + AT_rich Low_complexity Low_complexity 1 29 0 261 267 11 22 chr21 18579646 18579736 -26327834 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 2287 160 13 61 chr21 18580032 18580488 -26327082 - Tigger2 DNA MER2_type 0 2718 1 2054 91 14 11 chr21 18580782 18581103 -26326467 + AluSq SINE Alu 7 328 0 2002 110 3 27 chr21 18581402 18581701 -26325869 + AluSg SINE Alu 1 292 -18 21 36 0 0 chr21 18582025 18582053 -26325517 + AT_rich Low_complexity Low_complexity 1 28 0 303 189 81 0 chr21 18582115 18582189 -26325381 - MER116 DNA Mariner 0 80 1 653 124 0 9 chr21 18582353 18582458 -26325112 + AluSg/x SINE Alu 197 300 -10 23 0 0 0 chr21 18582514 18582537 -26325033 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 0 chr21 18582950 18583256 -26324314 - AluSp SINE Alu -5 308 2 27 49 0 0 chr21 18583982 18584023 -26323547 + AT_rich Low_complexity Low_complexity 1 41 0 811 257 96 32 chr21 18586352 18586729 -26320841 - MER110A LTR ERV1 -24 444 44 1832 191 2 72 chr21 18586729 18587143 -26320427 + MLT1B LTR MaLR 1 385 -5 26 30 0 0 chr21 18587320 18587353 -26320217 + AT_rich Low_complexity Low_complexity 1 33 0 2001 125 0 0 chr21 18587639 18587961 -26319609 - AluSg1 SINE Alu 0 326 5 1690 214 6 26 chr21 18587966 18588316 -26319254 - MLT1A1 LTR MaLR -13 352 10 289 301 77 56 chr21 18588327 18588470 -26319100 + MER5B DNA MER1_type 6 151 -27 1330 231 93 8 chr21 18588717 18589117 -26318453 - LTR2 LTR ERV1 0 490 1 3766 51 45 0 chr21 18589317 18589786 -26317784 + LTR2B LTR ERV1 1 490 0 23 33 0 0 chr21 18590130 18590160 -26317410 + AT_rich Low_complexity Low_complexity 1 30 0 1161 297 114 29 chr21 18590953 18591701 -26315869 + L1M4 LINE L1 2 812 -5730 1893 195 64 36 chr21 18591855 18592049 -26315521 + L1MB5 LINE L1 5282 5469 -705 3059 98 12 58 chr21 18592049 18592229 -26315341 - L1PA13 LINE L1 -8 6155 5968 1457 191 122 22 chr21 18592229 18592638 -26314932 + LTR7 LTR ERV1 1 450 0 3059 98 12 58 chr21 18592638 18592957 -26314613 - L1PA13 LINE L1 -195 5968 5679 636 38 0 0 chr21 18592958 18593037 -26314533 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 1893 195 64 36 chr21 18593037 18593338 -26314232 + L1MB5 LINE L1 5469 5797 -377 294 29 0 0 chr21 18593338 18593373 -26314197 + (CA)n Simple_repeat Simple_repeat 2 36 0 1893 195 64 36 chr21 18593373 18593407 -26314163 + L1MB5 LINE L1 5797 5829 -345 1213 231 43 67 chr21 18593409 18593428 -26314142 + MLT1A1 LTR MaLR 2 20 -345 2176 170 59 2 chr21 18593428 18593833 -26313737 - MSTC LTR MaLR 0 428 1 1213 231 43 67 chr21 18593833 18594186 -26313384 + MLT1A1 LTR MaLR 20 365 0 1460 182 34 62 chr21 18594186 18594538 -26313032 + L1MB5 LINE L1 5826 6167 -7 666 207 148 0 chr21 18594835 18595004 -26312566 + MER34C LTR ERV1 45 238 -347 629 146 29 0 chr21 18595006 18595109 -26312461 + MER4E LTR ERV1 661 766 0 21 0 0 0 chr21 18595896 18595917 -26311653 + AT_rich Low_complexity Low_complexity 1 21 0 2202 244 96 45 chr21 18597345 18598123 -26309447 - MER21B LTR ERV1 -27 836 19 355 264 0 0 chr21 18598145 18598217 -26309353 - MER21B LTR ERV1 -773 90 19 496 203 119 81 chr21 18598315 18598551 -26309019 + MER34 LTR ERV1 373 542 0 934 264 11 39 chr21 18598571 18598738 -26308832 - MER93a LTR ERV1 0 402 245 2363 143 3 3 chr21 18598738 18599101 -26308469 + THE1B LTR MaLR 2 364 0 934 264 11 39 chr21 18599101 18599217 -26308353 - MER93a LTR ERV1 -157 245 127 279 150 0 0 chr21 18599323 18599383 -26308187 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 51 0 0 chr21 18600143 18600182 -26307388 + AT_rich Low_complexity Low_complexity 1 39 0 2380 77 0 3 chr21 18600382 18600682 -26306888 - AluY SINE Alu -12 299 1 225 305 57 34 chr21 18600846 18601023 -26306547 + L1M4 LINE L1 3921 4101 -2045 195 222 0 0 chr21 18601681 18601726 -26305844 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 25 0 0 0 chr21 18602567 18602592 -26304978 + AT_rich Low_complexity Low_complexity 1 25 0 307 344 78 44 chr21 18602960 18603230 -26304340 + MLT1L LTR MaLR 207 485 -130 667 285 54 41 chr21 18603270 18603786 -26303784 - L1MCc LINE L1 -2668 4273 3751 378 240 31 23 chr21 18603783 18603912 -26303658 - L1MCc LINE L1 -3493 3448 3319 * 1172 272 34 33 chr21 18603940 18604051 -26303519 - L1MCc LINE L1 -4887 1536 1427 1341 204 68 75 chr21 18604051 18604434 -26303136 + MLT1C LTR MaLR 1 382 -85 2124 128 0 22 chr21 18604434 18604746 -26302824 - AluSx SINE Alu -7 305 1 1341 204 68 75 chr21 18604746 18604832 -26302738 + MLT1C LTR MaLR 382 467 0 1172 272 34 33 chr21 18604832 18605314 -26302256 - L1MCc LINE L1 -4996 1427 1119 289 259 43 17 chr21 18605328 18605444 -26302126 - L1MCc LINE L1 -6231 192 74 467 83 119 0 chr21 18605710 18606086 -26301484 + (TA)n Simple_repeat Simple_repeat 1 420 0 371 89 102 0 chr21 18606114 18606271 -26301299 + (TA)n Simple_repeat Simple_repeat 2 174 0 316 208 69 69 chr21 18606277 18606421 -26301149 - L1MCa LINE L1 -4361 2065 1922 491 99 78 9 chr21 18606421 18606875 -26300695 + (TA)n Simple_repeat Simple_repeat 1 485 0 381 209 34 23 chr21 18606904 18607081 -26300489 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 412 222 29 23 chr21 18607002 18607173 -26300397 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 352 116 79 6 chr21 18607174 18607338 -26300232 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 36 0 0 chr21 18607643 18607671 -26299899 + AT_rich Low_complexity Low_complexity 1 28 0 3210 147 18 43 chr21 18607698 18608318 -26299252 + L1MA3 LINE L1 5696 6299 -6 1422 223 80 11 chr21 18608553 18608903 -26298667 - MLT1A2 LTR MaLR 0 374 1 314 80 20 0 chr21 18609016 18609066 -26298504 + (CA)n Simple_repeat Simple_repeat 2 52 0 2164 101 0 0 chr21 18609827 18610113 -26297457 + AluSx SINE Alu 27 312 0 208 261 22 0 chr21 18610935 18610981 -26296589 - MIR SINE MIR -7 255 209 3655 102 2 4 chr21 18611118 18611627 -26295943 - MER9 LTR ERVK 0 511 4 216 0 0 0 chr21 18611627 18611651 -26295919 + (CA)n Simple_repeat Simple_repeat 2 25 0 408 319 47 43 chr21 18612136 18612390 -26295180 + MIR SINE MIR 1 255 -7 856 192 73 72 chr21 18612610 18613047 -26294523 - MLT1D LTR MaLR 0 505 1 292 335 121 18 chr21 18614055 18614201 -26293369 - L2 LINE L2 -8 3305 3175 2162 123 0 7 chr21 18614201 18614511 -26293059 + AluSq SINE Alu 2 309 -4 292 335 121 18 chr21 18614511 18614645 -26292925 - L2 LINE L2 -138 3175 2996 241 341 89 7 chr21 18615153 18615288 -26292282 - HAL1 LINE L1 -1618 889 744 314 394 42 34 chr21 18615341 18615605 -26291965 - HAL1 LINE L1 -1812 695 430 2061 239 96 13 chr21 18616418 18617053 -26290517 - MER76 LTR ERV 0 688 1 606 288 14 0 chr21 18617122 18617268 -26290302 + MIR SINE MIR 4 151 -111 1415 221 69 20 chr21 18617904 18618252 -26289318 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr21 18618524 18618553 -26289017 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr21 18618823 18618852 -26288718 + (TA)n Simple_repeat Simple_repeat 2 30 0 401 102 17 0 chr21 18620256 18620315 -26287255 + MLT2A2 LTR ERVL 1 60 -393 679 65 0 0 chr21 18620316 18620408 -26287162 + AluY SINE Alu 212 303 -8 1667 187 21 38 chr21 18620411 18620917 -26286653 + MLT2A2 LTR ERVL 54 554 0 458 79 0 0 chr21 18621503 18621566 -26286004 - L1P3 LINE L1 -724 5430 5368 1992 134 0 0 chr21 18621566 18621879 -26285691 - L1P3 LINE L1 -1087 5059 4747 1975 143 3 10 chr21 18622531 18622839 -26284731 + AluSx SINE Alu 1 306 -6 2175 208 30 56 chr21 18623235 18623806 -26283764 - MER89 LTR ERV1 0 559 4 1820 61 0 0 chr21 18623920 18624148 -26283422 - L1PA7 LINE L1 -8 6146 5919 325 246 36 18 chr21 18625010 18625120 -26282450 + L1ME LINE L1 5717 5828 -293 369 207 0 0 chr21 18626746 18626833 -26280737 + (CA)n Simple_repeat Simple_repeat 2 88 0 25 0 0 0 chr21 18626864 18626889 -26280681 + AT_rich Low_complexity Low_complexity 1 25 0 2686 191 16 14 chr21 18627079 18627644 -26279926 - L1MB3 LINE L1 -1 6182 5617 293 297 30 30 chr21 18627740 18627841 -26279729 + L2 LINE L2 2610 2710 -604 240 385 67 15 chr21 18628106 18628301 -26279269 + L2 LINE L2 2971 3175 -138 213 39 0 0 chr21 18630230 18630256 -26277314 + (GA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr21 18630708 18630738 -26276832 + AT_rich Low_complexity Low_complexity 1 30 0 722 223 51 6 chr21 18630878 18631053 -26276517 + L1PB4 LINE L1 5902 6084 -72 231 299 63 56 chr21 18631353 18631621 -26275949 + L1ME1 LINE L1 971 1240 -4879 1657 189 10 0 chr21 18632248 18632539 -26275031 - AluJb SINE Alu -16 296 3 458 197 88 36 chr21 18632587 18632724 -26274846 - L1 LINE L1 -1067 5079 4936 2063 191 98 7 chr21 18632724 18633144 -26274426 + LTR32 LTR ERVL 14 471 0 5266 173 22 3 chr21 18633149 18634183 -26273387 - L1 LINE L1 -1212 4934 3881 5064 170 30 28 chr21 18634181 18634546 -26273024 + L1MA4 LINE L1 5075 5438 -862 * 2849 10 0 0 chr21 18634546 18634859 -26272711 - AluYb8 SINE Alu -5 313 1 5064 170 30 28 chr21 18634859 18635678 -26271892 + L1MA4 LINE L1 5438 6266 -34 2109 183 52 0 chr21 18635678 18636083 -26271487 - MSTB LTR MaLR 0 426 1 5064 170 30 28 chr21 18636083 18636113 -26271457 + L1MA4 LINE L1 6266 6294 -6 895 277 85 72 chr21 18636230 18637275 -26270295 + L1ME1 LINE L1 1377 2435 -3875 1032 248 40 77 chr21 18637412 18637733 -26269837 + L1ME1 LINE L1 5482 5758 -387 946 156 6 39 chr21 18637733 18637913 -26269657 + L1PA16 LINE L1 5992 6165 -1 1032 248 40 77 chr21 18637913 18638278 -26269292 + L1ME1 LINE L1 5758 6135 -10 1326 159 15 8 chr21 18638383 18638647 -26268923 - L1MA4 LINE L1 -1 6299 6034 2191 88 3 10 chr21 18639064 18639359 -26268211 - AluSc SINE Alu -16 293 1 552 261 123 60 chr21 18639844 18640128 -26267442 + MER69 DNA AcHobo 1 302 -924 3822 183 23 33 chr21 18640235 18642858 -26264712 - L1MA8 LINE L1 -192 6099 3352 828 227 160 37 chr21 18643117 18643548 -26264022 + MER69 DNA AcHobo 2043 2526 0 285 273 162 7 chr21 18643650 18643804 -26263766 - MIR SINE MIR -27 235 58 1364 199 38 55 chr21 18644432 18644604 -26262966 + MLT1B LTR MaLR 1 175 -215 1994 137 3 3 chr21 18644604 18644904 -26262666 + AluJb SINE Alu 3 302 -10 1364 199 38 55 chr21 18644904 18645128 -26262442 + MLT1B LTR MaLR 175 390 0 1488 218 42 8 chr21 18645335 18645688 -26261882 - MLT1A1 LTR MaLR 0 365 1 256 357 54 0 chr21 18645792 18645904 -26261666 + L2 LINE L2 3196 3313 0 284 315 45 45 chr21 18646111 18646222 -26261348 - MIR SINE MIR -64 144 34 262 227 10 10 chr21 18647352 18647449 -26260121 + (TA)n Simple_repeat Simple_repeat 2 98 0 201 259 0 0 chr21 18647504 18647562 -26260008 + A-rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr21 18648436 18648458 -26259112 + AT_rich Low_complexity Low_complexity 1 22 0 1945 172 26 28 chr21 18649080 18649099 -26258471 - MLT1B LTR MaLR -2 388 370 1984 177 16 63 chr21 18649099 18649546 -26258024 - MSTC LTR MaLR 0 428 3 1945 172 26 28 chr21 18649546 18649915 -26257655 - MLT1B LTR MaLR -20 370 1 32 57 0 0 chr21 18650374 18650427 -26257143 + AT_rich Low_complexity Low_complexity 1 53 0 426 278 48 115 chr21 18651944 18652016 -26255554 + L1MEc LINE L1 38 113 -6283 1696 136 0 0 chr21 18652016 18652258 -26255312 + AluSg SINE Alu 49 290 -20 426 278 48 115 chr21 18652258 18652585 -26254985 + L1MEc LINE L1 113 410 -5986 1363 287 82 44 chr21 18652598 18653879 -26253691 + L1MEc LINE L1 901 2230 -4166 664 192 17 27 chr21 18653905 18654092 -26253478 + MER33 DNA MER1_type 1 172 -108 679 258 26 18 chr21 18654218 18654447 -26253123 + L1M4 LINE L1 4434 4664 -1482 220 169 17 17 chr21 18654570 18654629 -26252941 + (TA)n Simple_repeat Simple_repeat 2 60 0 435 38 0 0 chr21 18655273 18655326 -26252244 + (CA)n Simple_repeat Simple_repeat 2 54 0 205 366 14 0 chr21 18655911 18655982 -26251588 + L2 LINE L2 3177 3248 -24 21 36 0 0 chr21 18656145 18656173 -26251397 + AT_rich Low_complexity Low_complexity 1 28 0 499 302 81 25 chr21 18656237 18656558 -26251012 + MLT1H LTR MaLR 42 380 -169 27 29 0 0 chr21 18657149 18657183 -26250387 + AT_rich Low_complexity Low_complexity 1 34 0 285 244 0 0 chr21 18658140 18658226 -26249344 + (TA)n Simple_repeat Simple_repeat 1 86 0 254 266 0 21 chr21 18658323 18658417 -26249153 + L1MC4 LINE L1 6612 6703 -1339 31 0 0 0 chr21 18658495 18658526 -26249044 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr21 18658688 18658725 -26248845 + AT_rich Low_complexity Low_complexity 1 37 0 308 283 88 18 chr21 18658871 18658984 -26248586 + MIR SINE MIR 104 224 -38 23 0 0 0 chr21 18659066 18659089 -26248481 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr21 18659213 18659259 -26248311 + AT_rich Low_complexity Low_complexity 1 46 0 472 350 116 35 chr21 18660767 18661164 -26246406 - L2 LINE L2 -62 3251 2823 21 0 0 0 chr21 18661623 18661644 -26245926 + AT_rich Low_complexity Low_complexity 1 21 0 230 295 58 65 chr21 18661985 18662124 -26245446 - L2 LINE L2 -7 3306 3169 1939 116 61 7 chr21 18662368 18662661 -26244909 + AluSx SINE Alu 2 310 -2 4796 98 19 23 chr21 18662979 18663760 -26243810 - L1PA10 LINE L1 0 6168 5436 3569 143 31 2 chr21 18663760 18664203 -26243367 + L1P LINE L1 4725 5193 -975 261 0 0 0 chr21 18664203 18664232 -26243338 + (CA)n Simple_repeat Simple_repeat 2 30 0 3569 143 31 2 chr21 18664232 18664473 -26243097 + L1P LINE L1 5193 5426 -742 1386 276 28 42 chr21 18665793 18666391 -26241179 + MER92B LTR ERV1 1 590 -46 250 352 0 0 chr21 18666391 18666482 -26241088 + MER92B LTR ERV1 546 636 0 21 57 0 0 chr21 18666690 18666725 -26240845 + AT_rich Low_complexity Low_complexity 1 35 0 204 212 0 45 chr21 18667185 18667251 -26240319 + T-rich Low_complexity Low_complexity 1 63 0 1555 188 36 21 chr21 18668993 18669377 -26238193 + L1MB8 LINE L1 5789 6178 0 1445 208 0 30 chr21 18669400 18669698 -26237872 + AluJo SINE Alu 1 289 -23 224 211 0 0 chr21 18670211 18670263 -26237307 + (CA)n Simple_repeat Simple_repeat 2 53 0 2221 95 10 0 chr21 18670263 18670557 -26237013 - AluSp SINE Alu -16 297 1 180 0 0 0 chr21 18670563 18670583 -26236987 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 2255 113 0 0 chr21 18671466 18671775 -26235795 + AluSg SINE Alu 1 309 -1 188 306 97 69 chr21 18671932 18672076 -26235494 + L3 LINE CR1 1120 1267 -310 1901 249 136 43 chr21 18672327 18673026 -26234544 - MER21B LTR ERV1 -79 784 21 2077 100 0 4 chr21 18673027 18673307 -26234263 - AluSg SINE Alu -9 301 23 874 280 49 36 chr21 18673445 18673749 -26233821 + MER92A LTR ERV1 3 310 -102 476 248 19 0 chr21 18674164 18674269 -26233301 - U6 snRNA snRNA 0 107 1 358 208 9 38 chr21 18675070 18675176 -26232394 + 7SK RNA RNA 1 103 -90 204 319 29 0 chr21 18676076 18676145 -26231425 + MER5A DNA MER1_type 4 74 -115 242 198 111 49 chr21 18676267 18676348 -26231222 + L3 LINE CR1 1484 1569 -8 373 362 67 22 chr21 18676713 18677025 -26230545 + L2 LINE L2 2560 2885 -429 21 71 0 0 chr21 18677827 18677869 -26229701 + AT_rich Low_complexity Low_complexity 1 42 0 1422 210 10 32 chr21 18677903 18678212 -26229358 + AluJb SINE Alu 1 302 -10 6821 139 20 18 chr21 18678249 18680023 -26227547 + L1MA1 LINE L1 4522 6302 0 239 351 61 0 chr21 18680299 18680413 -26227157 + L2 LINE L2 3193 3313 0 542 264 8 8 chr21 18680945 18681070 -26226500 - MER45A DNA AcHobo 0 178 54 195 343 148 24 chr21 18681360 18681529 -26226041 - MIR SINE MIR -4 258 69 830 234 11 16 chr21 18683374 18683558 -26224012 + MER2 DNA MER2_type 1 183 -162 * 8377 146 44 19 chr21 18683556 18684972 -26222598 - Tigger2 DNA MER2_type -6 2712 1262 5267 168 10 44 chr21 18684953 18685043 -26222527 - Tigger2 DNA MER2_type -1730 988 896 * 1936 125 4 0 chr21 18685043 18685324 -26222246 - AluY SINE Alu -29 282 1 5267 168 10 44 chr21 18685324 18685782 -26221788 - Tigger2 DNA MER2_type -1822 896 489 2288 100 0 0 chr21 18685782 18686082 -26221488 - AluSc SINE Alu -9 300 1 5267 168 10 44 chr21 18686082 18686555 -26221015 - Tigger2 DNA MER2_type -2229 489 1 483 221 86 7 chr21 18686558 18686698 -26220872 + MER2 DNA MER2_type 192 342 -3 2230 88 0 17 chr21 18686790 18687084 -26220486 + AluSc SINE Alu 1 289 -20 32 0 0 0 chr21 18687281 18687313 -26220257 + AT_rich Low_complexity Low_complexity 1 32 0 203 255 20 0 chr21 18687373 18687424 -26220146 - L2 LINE L2 -15 3257 3206 549 364 46 4 chr21 18687790 18688029 -26219541 + MIR SINE MIR 11 259 -3 1400 199 0 87 chr21 18689194 18689304 -26218266 + MLT1B LTR MaLR 1 119 -271 1922 157 7 0 chr21 18689304 18689604 -26217966 + AluSq SINE Alu 1 302 -11 1400 199 0 87 chr21 18689604 18689840 -26217730 + MLT1B LTR MaLR 119 317 -73 1111 168 62 0 chr21 18689892 18690101 -26217469 - Tigger1 DNA MER2_type -5 2413 2192 928 164 0 7 chr21 18690098 18690250 -26217320 - Tigger1 DNA MER2_type -2267 151 1 * 204 119 71 0 chr21 18690305 18690347 -26217223 + GA-rich Low_complexity Low_complexity 3 47 0 1401 277 75 16 chr21 18690347 18690733 -26216837 + MLT1E2 LTR MaLR 215 623 -3 207 0 0 0 chr21 18692468 18692491 -26215079 + (TG)n Simple_repeat Simple_repeat 2 24 0 40 49 0 0 chr21 18692846 18692907 -26214663 + AT_rich Low_complexity Low_complexity 1 61 0 2576 43 0 0 chr21 18692975 18693280 -26214290 + AluY SINE Alu 1 305 -6 420 359 9 14 chr21 18693708 18693920 -26213650 - MIR SINE MIR -4 258 48 1481 234 27 40 chr21 18694829 18695230 -26212340 + MSTD LTR MaLR 1 396 0 372 311 16 0 chr21 18695293 18695415 -26212155 - L1ME1 LINE L1 -9 6157 6034 532 279 6 0 chr21 18695432 18695593 -26211977 - L1ME1 LINE L1 -272 5894 5733 343 36 0 36 chr21 18695645 18695700 -26211870 + (TA)n Simple_repeat Simple_repeat 2 54 0 329 62 21 0 chr21 18695708 18695756 -26211814 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1523 187 17 6 chr21 18695800 18696103 -26211467 - Tigger3(Golem) DNA MER2_type 0 3037 90 7464 238 44 18 chr21 18696111 18699271 -26208299 - L1MC1 LINE L1 -76 6537 3276 1624 198 3 0 chr21 18699271 18699599 -26207971 + AluJb SINE Alu 1 329 0 7464 238 44 18 chr21 18699599 18699938 -26207632 - L1MC1 LINE L1 -3337 3276 2947 1406 185 0 4 chr21 18699959 18700197 -26207373 - AluJb SINE Alu -75 237 1 1077 282 8 3 chr21 18700271 18700640 -26206930 - L1MC1 LINE L1 -3548 2878 2508 * 4939 159 63 6 chr21 18700634 18701787 -26205783 + L1PA15 LINE L1 4954 6164 -1 2326 205 40 37 chr21 18701797 18702492 -26205078 - L1MC1 LINE L1 -3948 2478 1828 2499 165 14 27 chr21 18702492 18703008 -26204562 - L1MA9 LINE L1 0 6312 5804 824 153 45 0 chr21 18703009 18703166 -26204404 - L1MA9 LINE L1 -804 5508 5345 567 248 0 15 chr21 18703167 18703304 -26204266 + L1 LINE L1 4863 4997 -1149 372 240 0 48 chr21 18703298 18703423 -26204147 + L1 LINE L1 5221 5339 -807 * 6215 196 74 60 chr21 18703421 18705114 -26202456 - L1MC1 LINE L1 -4671 1936 33 21 36 0 0 chr21 18705266 18705294 -26202276 + AT_rich Low_complexity Low_complexity 1 28 0 250 157 45 11 chr21 18705329 18705418 -26202152 + (TA)n Simple_repeat Simple_repeat 1 92 0 25 65 0 0 chr21 18705482 18705528 -26202042 + AT_rich Low_complexity Low_complexity 1 46 0 227 214 0 0 chr21 18705624 18705666 -26201904 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 359 351 35 12 chr21 18705829 18706000 -26201570 + MIR SINE MIR 88 262 0 4324 90 42 14 chr21 18707261 18707903 -26199667 + LTR30 LTR ERV1 63 722 0 391 238 0 0 chr21 18709350 18709434 -26198136 - AluSq SINE Alu -99 204 121 6762 66 6 9 chr21 18709474 18710979 -26196591 - L1PA7 LINE L1 -27 6127 4629 30 27 0 0 chr21 18711417 18711454 -26196116 + AT_rich Low_complexity Low_complexity 1 37 0 5265 100 1 3 chr21 18711498 18712245 -26195325 - L1PA8 LINE L1 -4 6168 5423 216 358 107 5 chr21 18712459 18712646 -26194924 + MIR SINE MIR 43 248 -14 25 0 0 0 chr21 18712851 18712876 -26194694 + AT_rich Low_complexity Low_complexity 1 25 0 258 179 0 0 chr21 18713462 18713518 -26194052 + GA-rich Low_complexity Low_complexity 1 56 0 289 79 0 0 chr21 18713710 18713748 -26193822 + MADE1 DNA Mariner 1 38 -42 188 237 0 0 chr21 18714013 18714051 -26193519 + MIR SINE MIR 25 62 -200 306 278 8 40 chr21 18714114 18714240 -26193330 - HsTC2 DNA Tc2 -1776 122 1 395 326 0 14 chr21 18714251 18714398 -26193172 + MIR SINE MIR 92 236 -26 22 70 0 0 chr21 18714435 18714478 -26193092 + AT_rich Low_complexity Low_complexity 1 43 0 270 333 76 0 chr21 18714695 18714827 -26192743 - MLT1J LTR MaLR -369 142 1 4795 174 84 15 chr21 18715209 18716163 -26191407 - LTR28 LTR ERV1 0 1020 1 218 327 10 29 chr21 18716284 18716388 -26191182 - L3b LINE CR1 -233 1350 1249 22 56 0 0 chr21 18717051 18717087 -26190483 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 18719008 18719046 -26188524 + AT_rich Low_complexity Low_complexity 1 38 0 23 78 0 0 chr21 18720122 18720173 -26187397 + AT_rich Low_complexity Low_complexity 1 51 0 442 351 81 44 chr21 18721256 18721744 -26185826 - L2 LINE L2 -1 3271 2777 477 109 0 0 chr21 18721744 18721808 -26185762 - LTR12 LTR ERV1 -4 710 647 331 289 8 31 chr21 18721808 18721936 -26185634 - LTR30 LTR ERV1 -54 668 544 1364 43 319 0 chr21 18721936 18722146 -26185424 - LTR12 LTR ERV1 -437 277 1 2105 110 0 0 chr21 18724215 18724496 -26183074 - AluSc SINE Alu -28 281 1 1958 164 38 35 chr21 18725613 18726040 -26181530 - LTR23 LTR ERV1 0 437 10 25 0 0 0 chr21 18726154 18726179 -26181391 + AT_rich Low_complexity Low_complexity 1 25 0 871 157 0 0 chr21 18726466 18726606 -26180964 - FRAM SINE Alu -7 169 30 201 147 0 0 chr21 18726723 18726757 -26180813 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4923 133 11 44 chr21 18726820 18727722 -26179848 + MER4D LTR ERV1 1 872 0 1621 236 119 33 chr21 18728119 18728391 -26179179 - MLT1F1 LTR MaLR 0 567 320 1924 159 36 36 chr21 18728391 18728755 -26178815 - THE1B LTR MaLR 0 364 1 1621 236 119 33 chr21 18728755 18729004 -26178566 - MLT1F1 LTR MaLR -247 320 1 581 204 10 124 chr21 18729602 18729803 -26177767 + MER101B LTR ERV1 1 178 -392 699 279 146 7 chr21 18731144 18731424 -26176146 + MLT1C LTR MaLR 146 464 -3 23 54 0 0 chr21 18732885 18732922 -26174648 + AT_rich Low_complexity Low_complexity 1 37 0 200 292 31 0 chr21 18733304 18733369 -26174201 + L2 LINE L2 1598 1664 -1650 211 111 0 28 chr21 18733731 18733767 -26173803 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 18734314 18734335 -26173235 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr21 18735429 18735454 -26172116 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 18735486 18735507 -26172063 + AT_rich Low_complexity Low_complexity 1 21 0 191 257 14 0 chr21 18735596 18735670 -26171900 + CT-rich Low_complexity Low_complexity 1 75 0 2070 120 7 13 chr21 18736287 18736586 -26170984 + AluSx SINE Alu 1 297 -15 972 128 0 0 chr21 18737019 18737152 -26170418 + AluSp SINE Alu 3 135 -178 362 339 164 27 chr21 18737173 18737654 -26169916 + L2 LINE L2 1743 2289 -1025 534 316 52 0 chr21 18737812 18737967 -26169603 - LTR16A LTR ERVL -87 363 201 272 305 65 25 chr21 18739048 18739248 -26168322 - HERV16 LTR ERVL -992 4493 4286 2218 137 24 19 chr21 18739427 18739800 -26167770 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr21 18739866 18739890 -26167680 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 512 300 25 30 chr21 18740523 18740723 -26166847 - HERV16 LTR ERVL -3204 1792 1594 265 287 27 87 chr21 18740818 18740968 -26166602 - HERV16 LTR ERVL -4230 1534 1394 286 176 35 71 chr21 18741072 18741157 -26166413 - HERV16 LTR ERVL -4044 952 871 487 96 108 0 chr21 18741941 18742024 -26165546 - MLT1B LTR MaLR -283 107 16 321 354 28 7 chr21 18742215 18742359 -26165211 + L2 LINE L2 3153 3299 -14 2160 162 14 0 chr21 18742434 18742793 -26164777 - THE1B LTR MaLR 0 364 1 1152 281 52 97 chr21 18745499 18745753 -26161817 + L2 LINE L2 1876 2140 -1174 2072 157 54 40 chr21 18745753 18746179 -26161391 - MSTB1 LTR MaLR 0 432 1 1152 281 52 97 chr21 18746179 18746758 -26160812 + L2 LINE L2 2140 2671 -643 2521 180 19 17 chr21 18746758 18747231 -26160339 - Tigger5 DNA MER2_type -1 2322 1849 1904 114 2 119 chr21 18747261 18747663 -26159907 - THE1A LTR MaLR 0 355 1 2411 93 3 0 chr21 18747667 18747991 -26159579 - THE1A-int LTR MaLR -4 1576 1252 1030 171 8 87 chr21 18748017 18748269 -26159301 + THE1A LTR MaLR 124 355 0 3146 85 6 60 chr21 18748272 18748772 -26158798 + THE1-int LTR MaLR 3 478 -1102 428 212 13 4 chr21 18749178 18749423 -26158147 + (TA)n Simple_repeat Simple_repeat 1 247 0 1471 177 14 22 chr21 18749424 18749701 -26157869 + AluJb SINE Alu 1 275 -37 341 90 103 0 chr21 18749718 18749873 -26157697 + (TA)n Simple_repeat Simple_repeat 1 171 0 296 193 11 23 chr21 18749881 18749969 -26157601 + (TATAA)n Simple_repeat Simple_repeat 2 88 0 266 108 84 0 chr21 18749979 18750062 -26157508 + (TA)n Simple_repeat Simple_repeat 2 91 0 414 298 32 64 chr21 18750095 18750313 -26157257 + L2 LINE L2 3084 3294 -19 23587 171 19 24 chr21 18751142 18753631 -26153939 + L1PA10 LINE L1 3 2504 -3979 2178 106 3 3 chr21 18753631 18753934 -26153636 + AluY SINE Alu 1 303 -8 23587 171 19 24 chr21 18753934 18757791 -26149779 + L1PA10 LINE L1 2504 6481 -2 22 35 0 0 chr21 18758109 18758138 -26149432 + AT_rich Low_complexity Low_complexity 1 29 0 1056 218 55 117 chr21 18758758 18759125 -26148445 + MLT1C LTR MaLR 59 396 -71 2186 118 0 0 chr21 18759125 18759422 -26148148 - AluSg1 SINE Alu -12 297 1 1056 218 55 117 chr21 18759422 18759490 -26148080 + MLT1C LTR MaLR 396 467 0 23 0 0 0 chr21 18759555 18759578 -26147992 + AT_rich Low_complexity Low_complexity 1 23 0 2119 106 27 0 chr21 18760076 18760369 -26147201 - AluSg1 SINE Alu -8 301 1 314 259 0 36 chr21 18760605 18760717 -26146853 - LTR41 LTR ERVL -12 761 654 1930 174 36 72 chr21 18761260 18761453 -26146117 + MLT2A2 LTR ERVL 1 199 -355 2488 34 41 0 chr21 18761453 18761745 -26145825 + AluY SINE Alu 1 304 -7 1930 174 36 72 chr21 18761745 18762131 -26145439 + MLT2A2 LTR ERVL 199 554 0 286 242 234 16 chr21 18762156 18762280 -26145290 - LTR41 LTR ERVL -622 151 1 21 0 0 0 chr21 18763136 18763157 -26144413 + AT_rich Low_complexity Low_complexity 1 21 0 330 339 16 0 chr21 18763328 18763449 -26144121 + MIR SINE MIR 18 140 -122 366 23 0 0 chr21 18764170 18764213 -26143357 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 354 0 0 chr21 18764488 18764570 -26143000 + MIR SINE MIR 179 260 -2 1974 145 0 16 chr21 18764816 18765133 -26142437 + AluJb SINE Alu 1 312 0 198 143 0 0 chr21 18765672 18765707 -26141863 + (TG)n Simple_repeat Simple_repeat 1 35 0 1145 190 9 22 chr21 18766240 18766472 -26141098 - L1MC1 LINE L1 -2 6331 6103 337 267 154 10 chr21 18766960 18767155 -26140415 - L1 LINE L1 -1633 4513 4291 417 331 87 12 chr21 18767319 18767561 -26140009 - L1 LINE L1 -3753 2393 2134 213 288 0 14 chr21 18767689 18767762 -26139808 + A-rich Low_complexity Low_complexity 2 73 0 357 24 0 0 chr21 18767771 18767813 -26139757 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 174 0 29 chr21 18767909 18767978 -26139592 + (TA)n Simple_repeat Simple_repeat 1 67 0 248 300 0 0 chr21 18768281 18768371 -26139199 - L1MC4 LINE L1 -1339 6703 6614 300 53 0 0 chr21 18768371 18768409 -26139161 + (TA)n Simple_repeat Simple_repeat 2 39 0 333 0 0 0 chr21 18768409 18768446 -26139124 + (GA)n Simple_repeat Simple_repeat 2 38 0 189 329 82 39 chr21 18768756 18768987 -26138583 + L2 LINE L2 1822 2062 -1252 1636 167 0 42 chr21 18769044 18769350 -26138220 + AluJb SINE Alu 4 296 -16 3284 77 13 24 chr21 18769813 18770269 -26137301 + MLT2A2 LTR ERVL 3 453 0 379 312 38 32 chr21 18770538 18770695 -26136875 - MIR SINE MIR -64 198 41 323 291 36 0 chr21 18770901 18771011 -26136559 + MIR SINE MIR 64 177 -85 424 314 85 27 chr21 18772368 18772626 -26134944 - L2 LINE L2 0 3313 3041 22 0 0 0 chr21 18772705 18772727 -26134843 + AT_rich Low_complexity Low_complexity 1 22 0 3082 173 41 125 chr21 18772828 18773315 -26134255 - L1MC2 LINE L1 -11 6333 5807 2166 113 3 3 chr21 18773315 18773615 -26133955 - AluSx SINE Alu -10 302 3 3082 173 41 125 chr21 18773615 18774358 -26133212 - L1MC2 LINE L1 -537 5807 5204 5349 261 63 14 chr21 18774361 18776502 -26131068 - L1MC2 LINE L1 -1207 4939 2693 268 311 59 25 chr21 18776814 18776933 -26130637 - LTR16C LTR ERVL -178 313 191 23 74 0 42 chr21 18777582 18777677 -26129893 + AT_rich Low_complexity Low_complexity 1 91 0 1658 294 114 11 chr21 18777850 18778490 -26129080 + L1MA9 LINE L1 12 717 -5238 483 186 0 59 chr21 18778480 18778598 -26128972 - L1 LINE L1 -1030 5116 5006 * 1348 240 45 73 chr21 18778709 18779388 -26128182 + L1MA9 LINE L1 578 1272 -4693 4453 164 33 76 chr21 18779399 18780726 -26126844 + L1MA9 LINE L1 4530 5760 -440 2096 69 0 0 chr21 18780726 18781001 -26126569 + L1PA5 LINE L1 5878 6152 -2 4453 164 33 76 chr21 18781001 18781423 -26126147 + L1MA9 LINE L1 5760 6199 -1 21 36 0 0 chr21 18782877 18782905 -26124665 + AT_rich Low_complexity Low_complexity 1 28 0 288 422 58 0 chr21 18783194 18783367 -26124203 + MER91A DNA MER1_type 2 184 -12 40 49 0 0 chr21 18783815 18783876 -26123694 + AT_rich Low_complexity Low_complexity 1 61 0 2525 184 56 26 chr21 18783967 18784020 -26123550 - L1MA7 LINE L1 -8 6283 6233 225 0 0 0 chr21 18784020 18784045 -26123525 + (TA)n Simple_repeat Simple_repeat 1 25 0 2525 184 56 26 chr21 18784045 18784567 -26123003 - L1MA7 LINE L1 -58 6233 5691 29 60 0 0 chr21 18784879 18784929 -26122641 + AT_rich Low_complexity Low_complexity 1 50 0 440 111 85 0 chr21 18786886 18787039 -26120531 + (TA)n Simple_repeat Simple_repeat 1 166 0 2035 179 46 113 chr21 18788532 18789080 -26118490 + MLT2B2 LTR ERVL 5 515 0 24 67 0 0 chr21 18789466 18789511 -26118059 + AT_rich Low_complexity Low_complexity 1 45 0 547 288 58 89 chr21 18790194 18790576 -26116994 + LTR33A LTR ERVL 1 370 -153 183 100 0 0 chr21 18790865 18790895 -26116675 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 195 346 39 0 chr21 18792828 18792906 -26114664 + L2 LINE L2 3230 3310 -3 2605 244 40 2 chr21 18793394 18794014 -26113556 - MER82 DNA MER2_type 0 653 10 2169 81 56 0 chr21 18794018 18794302 -26113268 + AluY SINE Alu 1 300 -11 1283 224 61 20 chr21 18794479 18794774 -26112796 + AluJo SINE Alu 1 307 -5 13248 160 34 6 chr21 18795007 18797336 -26110234 + Tigger1 DNA MER2_type 24 2417 -1 29 60 0 0 chr21 18797580 18797630 -26109940 + AT_rich Low_complexity Low_complexity 1 50 0 261 242 0 16 chr21 18799081 18799143 -26108427 - MLT1J2 LTR MaLR 0 450 390 559 168 19 0 chr21 18799154 18799261 -26108309 - L1MB1 LINE L1 -271 5897 5789 292 133 85 0 chr21 18799262 18799330 -26108240 + L1MB1 LINE L1 6099 6171 0 21 0 0 0 chr21 18800944 18800965 -26106605 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr21 18801570 18801621 -26105949 + AT_rich Low_complexity Low_complexity 1 51 0 534 274 131 28 chr21 18802882 18803134 -26104436 - LTR33 LTR ERVL -207 314 37 600 205 80 89 chr21 18803167 18803504 -26104066 + L1M4 LINE L1 4511 4844 -1302 603 278 71 39 chr21 18803560 18803996 -26103574 - Charlie2 DNA MER1_type -524 2338 1889 233 337 0 0 chr21 18804660 18804758 -26102812 + (CATA)n Simple_repeat Simple_repeat 2 99 0 299 345 55 27 chr21 18805095 18805315 -26102255 - LTR16A1 LTR ERVL -18 439 214 1106 115 19 0 chr21 18805411 18805568 -26102002 + AluSg/x SINE Alu 132 291 -21 24 0 0 0 chr21 18805802 18805826 -26101744 + AT_rich Low_complexity Low_complexity 1 24 0 809 153 0 0 chr21 18805922 18806053 -26101517 + FLAM_A SINE Alu 3 133 0 696 276 22 22 chr21 18806270 18806498 -26101072 + MIR SINE MIR 6 233 -29 725 295 4 18 chr21 18806584 18806811 -26100759 - MER58A DNA MER1_type 0 224 1 2118 89 21 3 chr21 18807774 18808056 -26099514 - AluSq SINE Alu -26 287 1 207 204 0 0 chr21 18808349 18808393 -26099177 + T-rich Low_complexity Low_complexity 1 44 0 1079 0 62 0 chr21 18808960 18809106 -26098464 + (TTTTA)n Simple_repeat Simple_repeat 5 159 0 1948 121 0 14 chr21 18809108 18809398 -26098172 - AluSx SINE Alu -26 286 1 302 303 87 76 chr21 18809443 18809628 -26097942 - HAL1b LINE L1 -845 503 317 908 183 51 108 chr21 18809820 18810115 -26097455 - L1MD2 LINE L1 -3 6356 6079 4044 250 64 60 chr21 18810118 18811876 -26095694 - L1MD2 LINE L1 -696 5546 3754 2332 92 0 0 chr21 18811876 18812180 -26095390 + AluSg SINE Alu 1 304 -6 4044 250 64 60 chr21 18812180 18812756 -26094814 - L1MD2 LINE L1 -2488 3754 3181 2219 113 71 11 chr21 18813034 18813388 -26094182 - THE1C LTR MaLR 0 375 1 2377 151 11 0 chr21 18813782 18814153 -26093417 - THE1C LTR MaLR 0 375 1 2919 67 0 0 chr21 18814324 18814700 -26092870 - L1PA5 LINE L1 -1 6153 5778 1109 222 19 5 chr21 18815896 18816112 -26091458 - MLT1A1 LTR MaLR 0 365 147 1033 191 0 47 chr21 18816114 18816329 -26091241 - L1P LINE L1 -2208 3938 3734 976 138 108 15 chr21 18816328 18816531 -26091039 - L1P4 LINE L1 -691 6177 5956 * 2573 93 6 0 chr21 18816535 18816888 -26090682 - THE1A LTR MaLR 0 355 1 1943 89 4 4 chr21 18816888 18817157 -26090413 - THE1A-int LTR MaLR 0 1580 1312 * 3989 95 0 0 chr21 18817152 18817698 -26089872 - THE1A-int LTR MaLR -1034 546 1 2549 96 3 25 chr21 18817698 18818061 -26089509 - THE1A LTR MaLR 0 355 1 11770 235 36 35 chr21 18818063 18819419 -26088151 - L1P4 LINE L1 -894 5954 4600 300 27 0 0 chr21 18819419 18819456 -26088114 + (TG)n Simple_repeat Simple_repeat 1 37 0 11770 235 36 35 chr21 18819456 18819664 -26087906 - L1P4 LINE L1 -2248 4600 4394 2491 105 8 0 chr21 18819664 18820016 -26087554 - THE1A LTR MaLR 0 355 1 10655 117 25 0 chr21 18820016 18821558 -26086012 - THE1A-int LTR MaLR 0 1580 1 2228 91 109 0 chr21 18821558 18821878 -26085692 - THE1A LTR MaLR 0 355 1 11770 235 36 35 chr21 18821878 18822555 -26085015 - L1P4 LINE L1 -2454 4394 3719 1514 209 150 3 chr21 18822555 18822928 -26084642 + MSTA LTR MaLR 1 428 0 11770 235 36 35 chr21 18822928 18824038 -26083532 - L1P4 LINE L1 -3129 3719 2611 1376 240 21 3 chr21 18824038 18824325 -26083245 + AluJb SINE Alu 1 292 -10 11770 235 36 35 chr21 18824325 18826946 -26080624 - L1P4 LINE L1 -4237 2611 10 240 59 0 0 chr21 18826959 18826993 -26080577 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr21 18827589 18827624 -26079946 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr21 18828160 18828197 -26079373 + AT_rich Low_complexity Low_complexity 1 37 0 1766 169 21 24 chr21 18828237 18828609 -26078961 - THE1C LTR MaLR 0 375 5 9519 139 35 12 chr21 18828614 18830158 -26077412 - THE1C-int LTR MaLR -1 1579 1 1997 140 26 34 chr21 18830158 18830536 -26077034 - THE1C LTR MaLR 0 375 1 1376 115 46 5 chr21 18831081 18831298 -26076272 + MER30 DNA MER1_type 5 230 0 23 0 0 87 chr21 18831442 18831466 -26076104 + AT_rich Low_complexity Low_complexity 1 21 -21 2254 77 3 14 chr21 18831466 18831763 -26075807 - AluSq SINE Alu -19 294 1 23 0 0 87 chr21 18831763 18831784 -26075786 + AT_rich Low_complexity Low_complexity 21 42 0 657 303 94 54 chr21 18832067 18832493 -26075077 - LTR16A1 LTR ERVL -14 443 1 2290 102 0 0 chr21 18833395 18833700 -26073870 - AluSx SINE Alu -7 305 1 25 65 0 0 chr21 18834705 18834751 -26072819 + AT_rich Low_complexity Low_complexity 1 46 0 500 325 64 13 chr21 18834918 18835152 -26072418 + Charlie8 DNA MER1_type 12 257 -2160 21 36 0 0 chr21 18835646 18835674 -26071896 + AT_rich Low_complexity Low_complexity 1 28 0 351 284 70 70 chr21 18835758 18836099 -26071471 - L1ME LINE L1 -297 5824 5484 190 325 8 114 chr21 18836244 18836367 -26071203 + MIR SINE MIR 5 114 -148 22 35 0 0 chr21 18836423 18836452 -26071118 + AT_rich Low_complexity Low_complexity 1 29 0 1080 30 0 0 chr21 18836453 18836584 -26070986 - L1PA6 LINE L1 -2 6152 6022 1724 103 136 7 chr21 18836707 18836980 -26070590 - AluSg1 SINE Alu -1 308 1 615 236 10 45 chr21 18837420 18837619 -26069951 - MER3 DNA MER1_type -9 200 9 2020 185 5 16 chr21 18838689 18839056 -26068514 - MLT1A1 LTR MaLR -2 363 1 21 57 0 0 chr21 18839300 18839335 -26068235 + AT_rich Low_complexity Low_complexity 1 35 0 399 182 0 0 chr21 18839521 18839598 -26067972 + (TA)n Simple_repeat Simple_repeat 2 78 0 26 64 0 0 chr21 18839615 18839662 -26067908 + AT_rich Low_complexity Low_complexity 1 47 0 1572 271 136 4 chr21 18839882 18840417 -26067153 - MLT1E2 LTR MaLR 0 626 21 4816 177 36 12 chr21 18840468 18841433 -26066137 - L1MC2 LINE L1 -3 6341 5354 481 345 78 43 chr21 18842165 18842603 -26064967 + HAL1 LINE L1 1089 1541 -966 2190 44 7 11 chr21 18842898 18843168 -26064402 - AluY SINE Alu -9 302 34 668 182 157 6 chr21 18843275 18843434 -26064136 - MSTA LTR MaLR -245 183 1 318 301 107 42 chr21 18843757 18844186 -26063384 + L1ME4a LINE L1 5558 6014 -107 38 68 0 0 chr21 18844483 18844556 -26063014 + AT_rich Low_complexity Low_complexity 1 73 0 27 29 0 0 chr21 18844753 18844787 -26062783 + AT_rich Low_complexity Low_complexity 1 34 0 425 263 20 26 chr21 18845060 18845212 -26062358 - L1MA9 LINE L1 -39 6273 6123 748 266 57 54 chr21 18845453 18845787 -26061783 - L1MC4a LINE L1 -1868 5940 5606 28 48 0 0 chr21 18845828 18845870 -26061700 + AT_rich Low_complexity Low_complexity 1 42 0 327 340 19 13 chr21 18846914 18847070 -26060500 + MLT2E LTR ERVL 238 394 -234 361 354 50 34 chr21 18848291 18848613 -26058957 + HAL1b LINE L1 395 721 -627 662 227 100 36 chr21 18849206 18849536 -26058034 + L1M4 LINE L1 2901 3251 -2895 871 223 20 95 chr21 18849587 18849977 -26057593 + L1M4 LINE L1 4133 4493 -1653 1729 142 59 14 chr21 18849980 18850268 -26057302 + AluSx SINE Alu 1 301 -11 699 230 113 24 chr21 18850294 18850440 -26057130 + L1MC3 LINE L1 6352 6484 -1301 2015 199 26 26 chr21 18850440 18850866 -26056704 + MSTB LTR MaLR 1 426 0 699 230 113 24 chr21 18850866 18850967 -26056603 + L1MC3 LINE L1 6484 6621 -1164 1316 248 88 29 chr21 18850990 18851446 -26056124 + MER74B LTR ERVL 66 548 -74 3039 186 108 116 chr21 18851514 18852022 -26055548 + L1MC3 LINE L1 6631 7142 -643 263 256 26 26 chr21 18852022 18852100 -26055470 + MLT1F1 LTR MaLR 45 122 -445 3039 186 108 116 chr21 18852100 18852351 -26055219 + L1MC3 LINE L1 7142 7394 -391 950 217 146 96 chr21 18852351 18852552 -26055018 + MLT1D LTR MaLR 3 192 -313 2128 138 0 0 chr21 18852552 18852864 -26054706 - AluSx SINE Alu 0 312 1 950 217 146 96 chr21 18852864 18853141 -26054429 + MLT1D LTR MaLR 192 505 0 3039 186 108 116 chr21 18853141 18853438 -26054132 + L1MC3 LINE L1 7394 7755 -30 27 29 0 0 chr21 18853728 18853762 -26053808 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 18853873 18853901 -26053669 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr21 18853978 18854000 -26053570 + (T)n Simple_repeat Simple_repeat 1 22 0 246 121 0 0 chr21 18854236 18854269 -26053301 + U2 snRNA snRNA 1 33 -155 294 285 109 42 chr21 18854289 18854557 -26053013 + MLT1E2 LTR MaLR 1 261 -365 1806 191 70 31 chr21 18854586 18855120 -26052450 - MLT2A2 LTR ERVL 0 554 1 881 249 26 0 chr21 18855127 18855320 -26052250 + MLT1E2 LTR MaLR 318 515 -111 3813 171 125 34 chr21 18856016 18857061 -26050509 - MER52C LTR ERV1 0 1278 1 22 0 0 0 chr21 18857323 18857345 -26050225 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr21 18858060 18858086 -26049484 + (CA)n Simple_repeat Simple_repeat 1 26 0 2324 68 0 10 chr21 18858206 18858545 -26049025 + AluY SINE Alu 1 311 0 194 215 0 15 chr21 18859866 18859931 -26047639 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1323 289 97 23 chr21 18860526 18862034 -26045536 - L1ME3A LINE L1 0 6170 4541 2442 43 0 0 chr21 18863480 18863798 -26043772 + AluY SINE Alu 1 318 0 564 106 0 0 chr21 18864423 18864508 -26043062 - L1PA8 LINE L1 -1 6171 6087 2669 40 0 0 chr21 18865973 18866276 -26041294 + AluY SINE Alu 2 304 -7 30 27 0 0 chr21 18866422 18866459 -26041111 + AT_rich Low_complexity Low_complexity 1 37 0 2278 82 13 13 chr21 18867142 18867447 -26040123 + AluY SINE Alu 1 305 -6 2062 131 152 8 chr21 18867577 18867951 -26039619 + MSTA LTR MaLR 1 428 0 187 206 0 0 chr21 18869286 18869320 -26038250 - L2 LINE L2 -12 3301 3268 333 0 0 0 chr21 18871511 18871548 -26036022 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr21 18871771 18871793 -26035777 + AT_rich Low_complexity Low_complexity 1 22 0 319 301 122 39 chr21 18872014 18872170 -26035400 + MER5B DNA MER1_type 4 172 -6 213 294 0 0 chr21 18872190 18872241 -26035329 - MER5A DNA MER1_type -6 183 133 263 308 51 17 chr21 18872370 18872487 -26035083 + L1MEc LINE L1 638 758 -5447 280 150 17 17 chr21 18872649 18872709 -26034861 + L1ME4a LINE L1 5841 5900 -221 225 0 0 0 chr21 18872709 18872734 -26034836 + (TA)n Simple_repeat Simple_repeat 1 25 0 317 324 48 14 chr21 18874241 18874386 -26033184 + MER110-int LTR ERV1 577 726 -3921 180 77 0 0 chr21 18875130 18875156 -26032414 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1546 77 15 58 chr21 18875160 18875419 -26032151 - L1MA1 LINE L1 -10 6292 6045 1981 128 0 20 chr21 18875508 18875812 -26031758 + AluSx SINE Alu 1 298 -14 1369 178 0 8 chr21 18877345 18877587 -26029983 - L1PA16 LINE L1 -9 6157 5918 344 177 0 16 chr21 18877588 18877650 -26029920 + L1PA16 LINE L1 6078 6138 -28 267 154 39 0 chr21 18877655 18877707 -26029863 + L1PA16 LINE L1 5918 5971 -195 * 983 148 13 18 chr21 18877699 18877885 -26029685 - L1PA16 LINE L1 -247 5919 5726 381 369 52 9 chr21 18877944 18878177 -26029393 - MIR SINE MIR -2 260 18 501 306 52 32 chr21 18878194 18878540 -26029030 + L1MEc LINE L1 1440 1792 -4604 24 32 0 0 chr21 18878717 18878748 -26028822 + AT_rich Low_complexity Low_complexity 1 31 0 1630 188 10 3 chr21 18879091 18879384 -26028186 + AluJo SINE Alu 8 302 -10 1730 136 3 31 chr21 18879820 18880106 -26027464 + AluJb SINE Alu 14 291 -21 236 336 12 12 chr21 18880139 18880242 -26027328 - MIR SINE MIR -62 146 44 484 132 13 0 chr21 18881351 18881427 -26026143 + MADE1 DNA Mariner 3 79 -1 954 260 85 81 chr21 18881429 18881794 -26025776 - MLT1H1 LTR MaLR -57 533 165 2184 82 3 0 chr21 18881794 18882121 -26025449 - AluY SINE Alu 0 328 1 954 260 85 81 chr21 18882121 18882278 -26025292 - MLT1H1 LTR MaLR -425 165 10 2169 114 0 3 chr21 18884480 18884778 -26022792 - AluSx SINE Alu -15 297 1 22 0 0 0 chr21 18884904 18884926 -26022644 + AT_rich Low_complexity Low_complexity 1 22 0 43 81 0 0 chr21 18885007 18885106 -26022464 + AT_rich Low_complexity Low_complexity 1 99 0 633 219 0 0 chr21 18885295 18885414 -26022156 - FLAM_A SINE Alu -11 122 4 2201 249 86 76 chr21 18886127 18887528 -26020042 + L1MB8 LINE L1 587 1990 -4656 1906 145 3 7 chr21 18887528 18887824 -26019746 - AluSx SINE Alu -17 295 1 2201 249 86 76 chr21 18887824 18887933 -26019637 + L1MB8 LINE L1 1990 2096 -4550 2005 248 74 41 chr21 18888089 18889098 -26018472 + L1MB8 LINE L1 3166 4208 -2436 1379 256 30 46 chr21 18889125 18889625 -26017945 + LTR55 LTR ERV 52 543 -5 1814 259 29 28 chr21 18889635 18890249 -26017321 + L1MB8 LINE L1 4217 4831 -1813 * 2695 224 41 61 chr21 18890235 18891296 -26016274 + L1MB8 LINE L1 5633 6674 -2 597 299 126 10 chr21 18891498 18891705 -26015865 + MIR SINE MIR 28 258 -4 24 32 0 0 chr21 18892435 18892466 -26015104 + AT_rich Low_complexity Low_complexity 1 31 0 1978 133 0 3 chr21 18893495 18893808 -26013762 + AluSx SINE Alu 1 312 0 228 186 23 0 chr21 18894062 18894105 -26013465 - L2 LINE L2 -3 3310 3267 339 376 55 5 chr21 18894585 18894787 -26012783 + MIR SINE MIR 51 262 0 1923 137 0 0 chr21 18895478 18895755 -26011815 + AluSx SINE Alu 21 297 -15 4126 120 5 0 chr21 18896440 18897038 -26010532 - L1PA10 LINE L1 -4 6164 5564 2231 118 0 0 chr21 18897856 18898169 -26009401 - AluSq SINE Alu 0 313 1 525 294 83 18 chr21 18898712 18898940 -26008630 - MIR SINE MIR -13 249 7 2186 153 109 10 chr21 18899015 18899426 -26008144 - LTR47A LTR ERVL 0 452 1 544 284 6 25 chr21 18899859 18900021 -26007549 + MIR3 SINE MIR 47 205 -3 2368 88 7 0 chr21 18901496 18901803 -26005767 + AluSq SINE Alu 3 311 -2 504 255 118 7 chr21 18902446 18902599 -26004971 - MLT1E2 LTR MaLR -374 252 83 180 77 0 0 chr21 18902652 18902678 -26004892 + (A)n Simple_repeat Simple_repeat 1 26 0 234 289 0 0 chr21 18902694 18902746 -26004824 + LTR30 LTR ERV1 1 52 -670 512 173 130 82 chr21 18902746 18902908 -26004662 + LTR12 LTR ERV1 53 230 -484 2328 67 0 0 chr21 18902908 18903214 -26004356 + AluY SINE Alu 1 306 0 512 173 130 82 chr21 18903214 18903258 -26004312 + LTR12 LTR ERV1 230 270 -444 236 186 59 76 chr21 18903258 18903376 -26004194 + LTR25 LTR ERV1 608 723 -71 563 139 0 20 chr21 18903376 18903477 -26004093 + LTR12 LTR ERV1 492 590 -124 343 319 37 29 chr21 18903485 18903758 -26003812 + L1MEc LINE L1 1908 2182 -4214 246 181 0 96 chr21 18903782 18903876 -26003694 + L1MEc LINE L1 2216 2300 -3915 1315 239 75 92 chr21 18903889 18904754 -26002816 + L1M4 LINE L1 3836 4682 -1464 1499 181 65 0 chr21 18904754 18905014 -26002556 - AluSg SINE Alu -33 277 1 1315 239 75 92 chr21 18905014 18905176 -26002394 + L1M4 LINE L1 4682 4845 -1301 302 294 0 22 chr21 18905194 18905286 -26002284 - L1MC4 LINE L1 -1339 6703 6614 * 329 275 0 22 chr21 18905228 18905319 -26002251 + L1MC4 LINE L1 6614 6702 -1340 322 376 0 0 chr21 18905330 18905492 -26002078 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 324 0 0 0 chr21 18905509 18905545 -26002025 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr21 18905546 18905568 -26002002 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr21 18905616 18905637 -26001933 + (CA)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr21 18905683 18905704 -26001866 + (TA)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr21 18905776 18905801 -26001769 + (TA)n Simple_repeat Simple_repeat 1 25 0 226 164 10 144 chr21 18905873 18905977 -26001593 + L1MC4 LINE L1 6614 6703 -1339 192 77 0 0 chr21 18905977 18906003 -26001567 + (CA)n Simple_repeat Simple_repeat 2 27 0 484 219 0 14 chr21 18906082 18906228 -26001342 + (TA)n Simple_repeat Simple_repeat 1 144 0 319 253 0 22 chr21 18906239 18906331 -26001239 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 288 0 0 0 chr21 18906383 18906415 -26001155 + (TA)n Simple_repeat Simple_repeat 1 32 0 186 133 0 0 chr21 18906492 18906522 -26001048 + (TA)n Simple_repeat Simple_repeat 1 30 0 246 189 0 74 chr21 18906653 18906748 -26000822 + L1MC4 LINE L1 6616 6703 -1339 192 200 0 0 chr21 18906748 18906788 -26000782 + (TA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr21 18906788 18906822 -26000748 + (CA)n Simple_repeat Simple_repeat 2 35 0 276 250 71 0 chr21 18906868 18906952 -26000618 + L1MC4 LINE L1 6614 6703 -1339 294 125 0 0 chr21 18906968 18907016 -26000554 + (TG)n Simple_repeat Simple_repeat 2 49 0 295 248 9 29 chr21 18907032 18907137 -26000433 + (TA)n Simple_repeat Simple_repeat 2 104 0 211 172 35 0 chr21 18907187 18907245 -26000325 + (TA)n Simple_repeat Simple_repeat 2 61 0 268 312 36 14 chr21 18907353 18907491 -26000079 + L1M4 LINE L1 4836 4976 -1170 220 54 71 18 chr21 18907498 18907554 -26000016 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 271 164 41 57 chr21 18907603 18907725 -25999845 + (TATAA)n Simple_repeat Simple_repeat 2 121 0 192 158 0 0 chr21 18907915 18907953 -25999617 + GA-rich Low_complexity Low_complexity 1 38 0 242 202 309 0 chr21 18908071 18908155 -25999415 + L1M LINE L1 5317 5426 -738 1549 191 0 10 chr21 18908155 18908443 -25999127 + MER7A DNA MER2_type 64 346 0 1092 277 90 19 chr21 18908457 18909308 -25998262 - L1M4 LINE L1 -3625 3332 2480 1326 275 85 20 chr21 18909432 18909701 -25997869 - L1M4 LINE L1 -4491 2468 2218 183 42 0 0 chr21 18909701 18909725 -25997845 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1326 275 85 20 chr21 18909725 18910368 -25997202 - L1M4 LINE L1 -4741 2218 1496 919 219 39 97 chr21 18910378 18910688 -25996882 + MLT2B1 LTR ERVL 1 292 -228 3139 142 24 30 chr21 18910695 18911229 -25996341 - MER61E LTR ERV1 -38 531 1 741 140 0 176 chr21 18911241 18911347 -25996223 + MLT2B1 LTR ERVL 362 421 -99 1254 154 121 77 chr21 18911347 18911776 -25995794 - LTR7 LTR ERV1 -2 448 1 741 140 0 176 chr21 18911776 18911862 -25995708 + MLT2B1 LTR ERVL 421 520 0 494 286 40 76 chr21 18911862 18912163 -25995407 - L1M4 LINE L1 -5365 1494 1205 297 100 0 0 chr21 18912319 18912369 -25995201 + (TG)n Simple_repeat Simple_repeat 1 50 0 252 272 167 43 chr21 18912727 18912838 -25994732 - L1M4 LINE L1 -5921 938 799 3658 30 0 0 chr21 18912838 18913272 -25994298 - L1PA4 LINE L1 -4 6151 5718 252 272 167 43 chr21 18913272 18913322 -25994248 - L1M4 LINE L1 -6060 799 757 1876 192 76 46 chr21 18913335 18913725 -25993845 - MER34 LTR ERV1 0 542 132 2329 73 0 0 chr21 18913725 18914025 -25993545 - AluY SINE Alu -11 300 1 1876 192 76 46 chr21 18914025 18914135 -25993435 - MER34 LTR ERV1 -410 132 27 270 310 20 30 chr21 18914389 18914489 -25993081 - MER20B DNA MER1_type -637 146 48 225 348 89 6 chr21 18914837 18914995 -25992575 - MIR SINE MIR -56 206 36 247 329 25 0 chr21 18917376 18917455 -25990115 - L1M4 LINE L1 -2065 4081 4001 269 196 0 0 chr21 18917764 18917815 -25989755 - L1MC4 LINE L1 -1344 6698 6648 503 184 29 0 chr21 18918009 18918112 -25989458 + L1MA9 LINE L1 6169 6274 -38 1969 132 3 3 chr21 18918316 18918605 -25988965 + AluSx SINE Alu 11 299 -13 21 0 0 0 chr21 18918689 18918710 -25988860 + AT_rich Low_complexity Low_complexity 1 21 0 306 169 0 0 chr21 18919010 18919075 -25988495 + (TG)n Simple_repeat Simple_repeat 2 66 0 697 180 16 0 chr21 18919092 18919220 -25988350 + FRAM SINE Alu 38 167 -9 240 314 51 29 chr21 18919993 18920130 -25987440 + L1MC/D LINE L1 5577 5716 -2092 279 157 0 0 chr21 18920396 18920447 -25987123 + (TA)n Simple_repeat Simple_repeat 2 52 0 393 302 120 40 chr21 18920503 18920728 -25986842 + MIR SINE MIR 20 262 0 249 304 0 0 chr21 18920826 18920895 -25986675 - L3 LINE CR1 -97 1480 1412 21 0 0 0 chr21 18920973 18920994 -25986576 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 18921758 18921792 -25985778 + AT_rich Low_complexity Low_complexity 1 34 0 2054 101 0 4 chr21 18921869 18922222 -25985348 - AluSc SINE Alu 0 358 7 5969 169 18 8 chr21 18922540 18923608 -25983962 + Tigger1 DNA MER2_type 1 1079 -1339 17600 182 25 6 chr21 18923629 18924925 -25982645 + L1MA1 LINE L1 461 1730 -5835 198 0 0 0 chr21 18924925 18924947 -25982623 + (GA)n Simple_repeat Simple_repeat 1 22 0 17600 182 25 6 chr21 18924947 18928022 -25979548 + L1MA1 LINE L1 1730 4918 -2647 4226 129 3 1 chr21 18928017 18928765 -25978805 + L1MA1 LINE L1 6546 7295 -426 * 625 175 0 0 chr21 18928762 18928876 -25978694 + L1M1 LINE L1 5584 5697 -1868 * 452 103 17 1 chr21 18928878 18928948 -25978622 - L1MA1 LINE L1 -258 5893 5823 2693 102 10 0 chr21 18928951 18929351 -25978219 + L1MA1 LINE L1 5899 6302 0 7414 157 7 45 chr21 18929366 18930171 -25977399 + Tigger1 DNA MER2_type 1061 1895 -523 1296 214 23 45 chr21 18930171 18930479 -25977091 - AluJo SINE Alu -9 303 3 7414 157 7 45 chr21 18930479 18930879 -25976691 + Tigger1 DNA MER2_type 1895 2208 -210 2033 106 4 7 chr21 18930879 18931154 -25976416 - AluSc SINE Alu -15 294 21 7414 157 7 45 chr21 18931154 18931358 -25976212 + Tigger1 DNA MER2_type 2208 2418 0 294 217 0 0 chr21 18931628 18931697 -25975873 + (TA)n Simple_repeat Simple_repeat 2 70 0 1333 180 105 7 chr21 18931920 18932214 -25975356 + THE1C LTR MaLR 1 323 -52 6011 130 59 13 chr21 18932218 18933166 -25974404 + THE1C-int LTR MaLR 589 1580 0 1886 121 55 71 chr21 18933166 18933547 -25974023 + THE1C LTR MaLR 1 375 0 370 280 42 42 chr21 18933711 18933900 -25973670 + L1ME2 LINE L1 5454 5642 -520 22 35 0 0 chr21 18934219 18934248 -25973322 + AT_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr21 18934398 18934467 -25973103 + AT_rich Low_complexity Low_complexity 1 69 0 30 27 0 0 chr21 18934508 18934545 -25973025 + AT_rich Low_complexity Low_complexity 1 37 0 265 188 25 0 chr21 18935089 18935169 -25972401 + (TA)n Simple_repeat Simple_repeat 2 83 0 3111 117 6 32 chr21 18935456 18935954 -25971616 + LTR22B LTR ERVK 5 489 -3 977 310 33 26 chr21 18937192 18937582 -25969988 + LTR40a LTR ERVL 3 395 -124 331 309 21 10 chr21 18937685 18937782 -25969788 - L2 LINE L2 -29 3284 3187 40 49 0 0 chr21 18937804 18937865 -25969705 + AT_rich Low_complexity Low_complexity 1 61 0 333 376 41 25 chr21 18938321 18938688 -25968882 - L2 LINE L2 -963 2351 1979 29 78 0 0 chr21 18938795 18938859 -25968711 + AT_rich Low_complexity Low_complexity 1 64 0 308 164 0 75 chr21 18941084 18941151 -25966419 - MSTA LTR MaLR -366 62 1 8591 178 37 6 chr21 18941151 18942753 -25964817 - MSTA-int LTR MaLR 0 1651 1 2383 141 69 12 chr21 18942753 18943158 -25964412 - MSTA LTR MaLR 0 428 1 2074 122 127 16 chr21 18943237 18943622 -25963948 - MSTA LTR MaLR 0 428 1 208 176 59 0 chr21 18943966 18944017 -25963553 + T-rich Low_complexity Low_complexity 3 56 0 381 94 0 0 chr21 18945681 18945734 -25961836 + U2 snRNA snRNA 1 53 -135 1519 210 7 0 chr21 18945962 18946257 -25961313 + AluJb SINE Alu 1 297 -15 322 23 0 0 chr21 18946786 18946830 -25960740 + L1PA2 LINE L1 6110 6153 -2 295 266 93 103 chr21 18947003 18947304 -25960266 + L1ME2 LINE L1 5789 6086 -78 608 175 39 0 chr21 18947320 18947423 -25960147 - FLAM_A SINE Alu -35 107 1 195 100 0 0 chr21 18947458 18947488 -25960082 + (CA)n Simple_repeat Simple_repeat 2 31 0 3128 178 41 64 chr21 18948989 18949696 -25957874 - LTR8 LTR ERV1 0 691 1 2268 107 3 3 chr21 18950777 18951086 -25956484 - AluSc SINE Alu 0 309 1 230 271 0 0 chr21 18951447 18951506 -25956064 + (TA)n Simple_repeat Simple_repeat 2 60 0 1126 228 20 64 chr21 18952934 18953325 -25954245 + MLT1A2 LTR MaLR 1 374 0 24 0 0 0 chr21 18953706 18953730 -25953840 + AT_rich Low_complexity Low_complexity 1 24 0 231 157 0 0 chr21 18953890 18953941 -25953629 + (TA)n Simple_repeat Simple_repeat 2 52 0 308 224 31 0 chr21 18953997 18954095 -25953475 + (TA)n Simple_repeat Simple_repeat 2 102 0 338 313 125 10 chr21 18954155 18954347 -25953223 + L1MC4 LINE L1 5734 5947 -2095 2552 137 83 5 chr21 18954460 18954904 -25952666 - MER31A LTR ERV1 -6 479 1 42 0 0 0 chr21 18954978 18955020 -25952550 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 18955042 18955064 -25952506 + AT_rich Low_complexity Low_complexity 1 22 0 2029 115 11 0 chr21 18955231 18955517 -25952053 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr21 18955527 18955548 -25952022 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 197 136 74 12 chr21 18955593 18955674 -25951896 + (TA)n Simple_repeat Simple_repeat 1 86 0 1651 218 6 3 chr21 18956028 18956359 -25951211 - MLT1A1 LTR MaLR 0 365 34 757 228 0 5 chr21 18956614 18956798 -25950772 - L1M4 LINE L1 -3275 2871 2689 2710 167 8 41 chr21 18958009 18958597 -25948973 + L1MB3 LINE L1 5606 6174 -9 2496 39 3 29 chr21 18959153 18959465 -25948105 + AluY SINE Alu 1 304 -7 1302 192 0 25 chr21 18960458 18960703 -25946867 + AluJo SINE Alu 12 250 -62 2128 54 11 4 chr21 18960829 18961107 -25946463 + L1PA7 LINE L1 5874 6153 -1 222 309 32 56 chr21 18962200 18962326 -25945244 + MIR SINE MIR 20 142 -66 22 0 0 0 chr21 18962966 18962988 -25944582 + AT_rich Low_complexity Low_complexity 1 22 0 7879 198 99 23 chr21 18963648 18965280 -25942290 + MER52A LTR ERV1 1 1755 0 185 238 191 0 chr21 18965436 18965499 -25942071 + MIR SINE MIR 120 194 -68 10573 160 144 7 chr21 18965744 18967870 -25939700 + Tigger1 DNA MER2_type 2 2418 0 4240 178 15 26 chr21 18967872 18968719 -25938851 + L1MC1 LINE L1 5445 6282 -51 1913 56 0 0 chr21 18969227 18969459 -25938111 - AluSc SINE Alu 0 309 78 483 145 0 0 chr21 18969459 18969535 -25938035 + AluS SINE Alu 2 77 -232 186 404 0 20 chr21 18969537 18969636 -25937934 + L3 LINE CR1 1455 1551 -26 935 167 49 20 chr21 18969922 18970126 -25937444 - L1MA4 LINE L1 -7 6293 6084 250 111 0 0 chr21 18970791 18970827 -25936743 - MIR SINE MIR -109 153 118 944 301 116 33 chr21 18972977 18973458 -25934112 - MLT1G1 LTR MaLR -2 593 73 30 27 0 0 chr21 18973683 18973720 -25933850 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr21 18973795 18973832 -25933738 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr21 18973915 18973961 -25933609 + AT_rich Low_complexity Low_complexity 1 46 0 2052 120 17 3 chr21 18974600 18974900 -25932670 - AluSc SINE Alu -5 304 1 190 354 80 9 chr21 18975074 18975187 -25932383 - MIR SINE MIR -106 156 36 252 116 0 87 chr21 18975389 18975458 -25932112 + (TAAAA)n Simple_repeat Simple_repeat 5 67 0 22 0 0 0 chr21 18975464 18975486 -25932084 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 18975570 18975598 -25931972 + AT_rich Low_complexity Low_complexity 1 28 0 889 229 59 81 chr21 18975658 18976029 -25931541 - MLT1A1 LTR MaLR -2 363 1 222 189 0 0 chr21 18976035 18976072 -25931498 + (TG)n Simple_repeat Simple_repeat 2 38 0 401 284 6 0 chr21 18976082 18976251 -25931319 + (TA)n Simple_repeat Simple_repeat 1 170 0 1814 131 36 0 chr21 18976300 18976605 -25930965 + AluSq SINE Alu 1 315 0 328 286 45 0 chr21 18976669 18976781 -25930789 - MER94 DNA DNA -13 121 5 281 326 0 22 chr21 18977408 18977500 -25930070 - MLT2E LTR ERVL -507 121 32 342 328 123 23 chr21 18977878 18978180 -25929390 + L1MEd LINE L1 924 1255 -4864 21 95 0 0 chr21 18979210 18979273 -25928297 + AT_rich Low_complexity Low_complexity 1 63 0 799 209 110 3 chr21 18979946 18980375 -25927195 - MER110A LTR ERV1 0 468 1 22 35 0 0 chr21 18980559 18980588 -25926982 + AT_rich Low_complexity Low_complexity 1 29 0 1300 140 31 19 chr21 18981065 18981350 -25926220 + MER61C LTR ERV1 1 378 -56 259 128 0 21 chr21 18981585 18981632 -25925938 + MER61B LTR ERV1 380 425 0 1890 192 87 60 chr21 18982532 18983151 -25924419 - MER92B LTR ERV1 0 636 1 324 285 19 41 chr21 18983632 18983771 -25923799 + MIR SINE MIR 29 166 -64 2957 190 14 17 chr21 18983825 18984414 -25923156 + L1MA6 LINE L1 3907 4493 -1653 * 4638 170 14 23 chr21 18984411 18985290 -25922280 + L1MA6 LINE L1 5385 6257 -43 2053 118 0 17 chr21 18985290 18985587 -25921983 - AluSx SINE Alu -16 296 5 4638 170 14 23 chr21 18985587 18985623 -25921947 + L1MA6 LINE L1 6257 6292 -8 247 208 0 0 chr21 18987130 18987183 -25920387 - L1PB4 LINE L1 -2 6154 6102 284 354 49 21 chr21 18987326 18987470 -25920100 - MIR SINE MIR -112 150 3 666 270 80 31 chr21 18987471 18987760 -25919810 - MER102b DNA MER1_type 0 341 39 1939 107 48 0 chr21 18988487 18988776 -25918794 + AluSc SINE Alu 7 309 0 220 372 117 7 chr21 18989349 18989494 -25918076 + MIR SINE MIR 21 181 -81 27 49 0 0 chr21 18990058 18990099 -25917471 + AT_rich Low_complexity Low_complexity 1 41 0 207 171 0 0 chr21 18990258 18990293 -25917277 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1957 174 63 27 chr21 18990508 18990921 -25916649 + MSTA LTR MaLR 1 428 0 7327 187 50 27 chr21 18990921 18992536 -25915034 + MSTA-int LTR MaLR 1 1651 0 2106 191 62 2 chr21 18992536 18992940 -25914630 + MSTA LTR MaLR 1 428 0 462 230 80 19 chr21 18992987 18993152 -25914418 - MER58B DNA MER1_type -8 333 3 711 293 77 5 chr21 18993229 18993451 -25914119 - MIR SINE MIR -7 255 18 24 0 0 0 chr21 18993629 18993653 -25913917 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr21 18994153 18994185 -25913385 + AT_rich Low_complexity Low_complexity 1 32 0 359 291 109 11 chr21 18995855 18996030 -25911540 - MIR SINE MIR -1 261 70 489 29 0 0 chr21 18998031 18998101 -25909469 - AluY SINE Alu 0 310 241 1348 211 33 21 chr21 18998504 18998841 -25908729 + L1MA9 LINE L1 5970 6310 -2 1141 299 82 23 chr21 18999309 19000006 -25907564 + L1ME3A LINE L1 3899 4553 -1593 321 68 0 0 chr21 19000006 19000050 -25907520 + (TG)n Simple_repeat Simple_repeat 2 45 0 1141 299 82 23 chr21 19000050 19000070 -25907500 + L1ME3A LINE L1 4553 4570 -1576 2202 82 34 3 chr21 19000070 19000361 -25907209 - AluSq SINE Alu -11 302 3 1141 299 82 23 chr21 19000361 19000469 -25907101 + L1ME3A LINE L1 4570 4774 -1372 659 265 64 91 chr21 19000602 19001536 -25906034 + L1ME3A LINE L1 4948 5852 -318 1059 199 43 115 chr21 19001536 19001928 -25905642 + MLT1A1 LTR MaLR 1 364 -1 659 265 64 91 chr21 19001928 19002032 -25905538 + L1ME3A LINE L1 5852 5957 -213 303 248 92 37 chr21 19002051 19002160 -25905410 + L1ME3A LINE L1 6032 6146 -24 1746 177 47 56 chr21 19002189 19002246 -25905324 + MSTB LTR MaLR 1 57 -369 2370 77 0 3 chr21 19002246 19002556 -25905014 + AluY SINE Alu 1 309 -2 1746 177 47 56 chr21 19002556 19002928 -25904642 + MSTB LTR MaLR 57 426 0 30 59 0 0 chr21 19003038 19003089 -25904481 + AT_rich Low_complexity Low_complexity 1 51 0 3580 164 103 17 chr21 19003945 19004455 -25903115 + L1MC2 LINE L1 5321 5786 -558 2023 152 0 7 chr21 19004455 19004764 -25902806 + AluSx SINE Alu 1 307 -5 3580 164 103 17 chr21 19004764 19004942 -25902628 + L1MC2 LINE L1 5786 5947 -397 468 0 0 0 chr21 19004942 19004994 -25902576 + (TA)n Simple_repeat Simple_repeat 2 53 0 3580 164 103 17 chr21 19004994 19005084 -25902486 + L1MC2 LINE L1 5947 6167 -177 499 208 75 81 chr21 19005085 19005258 -25902312 + MLT1B LTR MaLR 1 172 -218 413 133 26 9 chr21 19005290 19005403 -25902167 + (CA)n Simple_repeat Simple_repeat 2 116 0 309 125 0 0 chr21 19005425 19005481 -25902089 + (TC)n Simple_repeat Simple_repeat 1 56 0 588 255 25 12 chr21 19005495 19005656 -25901914 + MLT1B LTR MaLR 201 363 -27 612 239 55 0 chr21 19005667 19005830 -25901740 + L1MC2 LINE L1 6165 6336 -8 214 382 20 20 chr21 19005957 19006059 -25901511 + MIR SINE MIR 38 139 -69 198 71 0 0 chr21 19006270 19006298 -25901272 + (TG)n Simple_repeat Simple_repeat 1 28 0 185 0 40 0 chr21 19006297 19006322 -25901248 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1593 191 4 4 chr21 19007417 19007695 -25899875 + AluJb SINE Alu 2 279 -33 298 329 119 42 chr21 19007961 19008173 -25899397 - MIR SINE MIR -3 205 15 266 269 27 54 chr21 19008608 19008750 -25898820 - L2 LINE L2 -20 3293 3154 1844 149 58 25 chr21 19008750 19009113 -25898457 - THE1C LTR MaLR 0 375 1 1979 207 14 29 chr21 19009424 19009844 -25897726 + MLT2D LTR ERVL 1 414 0 1498 151 82 55 chr21 19010075 19010440 -25897130 + THE1C LTR MaLR 1 375 0 1795 208 164 9 chr21 19010827 19011278 -25896292 + L1MCa LINE L1 18 538 -5888 502 331 60 44 chr21 19011655 19012039 -25895531 + L1MCc LINE L1 786 1175 -5248 21 36 0 0 chr21 19012039 19012067 -25895503 + AT_rich Low_complexity Low_complexity 1 28 0 863 277 51 30 chr21 19012167 19012572 -25894998 + L1MCc LINE L1 1211 1606 -5076 2530 65 0 0 chr21 19012572 19012881 -25894689 + AluY SINE Alu 1 309 -2 863 277 51 30 chr21 19012881 19012913 -25894657 + L1MCc LINE L1 1606 1636 -5046 261 0 0 0 chr21 19012913 19012942 -25894628 + (TG)n Simple_repeat Simple_repeat 2 30 0 863 277 51 30 chr21 19012942 19013072 -25894498 + L1MCc LINE L1 1636 1795 -4887 390 274 24 0 chr21 19013132 19013232 -25894338 + L1MCc LINE L1 2889 2996 -4126 1471 205 16 19 chr21 19013232 19013539 -25894031 + AluJo SINE Alu 1 306 -6 390 274 24 0 chr21 19013539 19013602 -25893968 + L1MCc LINE L1 2996 3056 -4066 1278 290 83 28 chr21 19013694 19014198 -25893372 + L1ME1 LINE L1 8 539 -6003 3374 198 35 21 chr21 19014199 19015051 -25892519 + L1ME1 LINE L1 768 1631 -4911 * 4226 226 89 53 chr21 19015050 19015483 -25892087 + L1ME1 LINE L1 4246 4662 -2002 282 56 0 0 chr21 19015483 19015519 -25892051 + (CA)n Simple_repeat Simple_repeat 2 37 0 4226 226 89 53 chr21 19015519 19016217 -25891353 + L1ME1 LINE L1 4662 5333 -1331 1816 168 45 25 chr21 19016217 19016574 -25890996 + THE1B LTR MaLR 1 364 0 9886 108 31 43 chr21 19016575 19018172 -25889398 + THE1C-int LTR MaLR 2 1580 0 2008 160 53 3 chr21 19018172 19018529 -25889041 + THE1C LTR MaLR 1 375 0 4226 226 89 53 chr21 19018529 19019166 -25888404 + L1ME1 LINE L1 5333 5946 -718 189 0 0 0 chr21 19019166 19019187 -25888383 + (TA)n Simple_repeat Simple_repeat 2 22 0 4226 226 89 53 chr21 19019187 19019751 -25887819 + L1ME1 LINE L1 5946 6659 -5 225 0 0 0 chr21 19019787 19019812 -25887758 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1339 193 88 154 chr21 19019837 19020358 -25887212 + MER50 LTR ERV1 14 469 -265 2302 52 3 39 chr21 19020358 19020665 -25886905 - AluY SINE Alu -15 296 1 1339 193 88 154 chr21 19020665 19020915 -25886655 + MER50 LTR ERV1 469 734 0 281 355 12 47 chr21 19020981 19021153 -25886417 + L2 LINE L2 2243 2408 -906 232 224 20 0 chr21 19021243 19021292 -25886278 + L2 LINE L2 3264 3313 0 968 211 68 0 chr21 19022428 19022679 -25884891 - L1MA4 LINE L1 -6 6294 6027 684 192 0 8 chr21 19023030 19023150 -25884420 + FLAM_C SINE Alu 12 130 -13 656 284 172 21 chr21 19023182 19023664 -25883906 - HsTC2 DNA Tc2 -64 1834 1280 26 0 0 0 chr21 19023664 19023690 -25883880 + AT_rich Low_complexity Low_complexity 1 26 0 273 316 0 0 chr21 19023690 19023766 -25883804 - HsTC2 DNA Tc2 -1764 134 59 2146 119 3 0 chr21 19023767 19024060 -25883510 + AluSp SINE Alu 1 294 -19 359 127 0 0 chr21 19024618 19024673 -25882897 - MADE1 DNA Mariner 0 80 26 2037 217 57 6 chr21 19025002 19025153 -25882417 + L1MB1 LINE L1 5677 5819 -370 1853 128 0 15 chr21 19025153 19025427 -25882143 + AluSx SINE Alu 38 307 -5 2037 217 57 6 chr21 19025427 19025745 -25881825 + L1MB1 LINE L1 5819 6170 -19 2430 46 0 33 chr21 19027668 19027972 -25879598 - AluY SINE Alu -6 305 12 251 175 16 32 chr21 19028379 19028442 -25879128 + L1ME4a LINE L1 5982 6043 -78 25 83 0 0 chr21 19028454 19028514 -25879056 + AT_rich Low_complexity Low_complexity 1 60 0 202 352 28 0 chr21 19029004 19029075 -25878495 - MIR SINE MIR -161 101 29 2059 122 0 33 chr21 19030966 19031270 -25876300 + AluSq SINE Alu 1 294 -19 2204 183 45 2 chr21 19031396 19031861 -25875709 - MER31A LTR ERV1 0 485 1 599 155 0 46 chr21 19032537 19032711 -25874859 + (TA)n Simple_repeat Simple_repeat 2 167 0 198 0 0 0 chr21 19032761 19032783 -25874787 + (TA)n Simple_repeat Simple_repeat 2 23 0 279 349 59 98 chr21 19033544 19033931 -25873639 - L2 LINE L2 -5 3267 2896 229 385 113 29 chr21 19033958 19034340 -25873230 - L2 LINE L2 -576 2738 2325 704 206 14 21 chr21 19035485 19035626 -25871944 - MER68 LTR ERV1 -8 554 415 910 219 17 95 chr21 19035630 19036065 -25871505 + MLT1B LTR MaLR 4 390 0 2333 169 38 5 chr21 19036072 19036469 -25871101 - MER68 LTR ERV1 -152 410 1 2231 92 0 10 chr21 19037106 19037401 -25870169 + AluY SINE Alu 1 292 -19 201 213 0 0 chr21 19037932 19037979 -25869591 + (TA)n Simple_repeat Simple_repeat 1 47 0 192 40 0 0 chr21 19038571 19038596 -25868974 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 225 108 0 0 chr21 19038595 19038632 -25868938 + (CA)n Simple_repeat Simple_repeat 2 38 0 1156 257 107 113 chr21 19039207 19040001 -25867569 + MER21B LTR ERV1 13 801 -62 282 315 116 13 chr21 19040289 19040521 -25867049 - L1M4 LINE L1 -855 5291 5036 818 273 196 48 chr21 19040678 19042315 -25865255 - L1M4 LINE L1 -1098 5048 3055 2121 131 0 3 chr21 19042315 19042627 -25864943 - AluSq SINE Alu -2 311 1 818 273 196 48 chr21 19042627 19043004 -25864566 - L1M4 LINE L1 -3091 3055 2735 349 272 38 42 chr21 19043015 19043276 -25864294 - L1M4 LINE L1 -3324 2822 2563 236 273 23 45 chr21 19043288 19043376 -25864194 + MER5B DNA MER1_type 87 172 -6 330 310 103 0 chr21 19043860 19043976 -25863594 + Charlie8 DNA MER1_type 12 139 -2278 251 300 147 37 chr21 19046592 19046865 -25860705 - L2 LINE L2 -376 2938 2636 1751 240 25 16 chr21 19047871 19048313 -25859257 - LTR40a LTR ERVL -3 516 71 980 255 58 0 chr21 19048367 19048657 -25858913 - HERVL40 LTR ERVL -12 5518 2823 364 307 24 12 chr21 19048584 19048750 -25858820 - MER68-int LTR ERV1 -316 6485 6318 * 613 299 87 10 chr21 19049498 19049705 -25857865 - HERVL40 LTR ERVL -1044 4486 4264 2542 283 74 16 chr21 19049825 19050676 -25856894 - HERVL40 LTR ERVL -1415 4115 3216 664 207 14 0 chr21 19050677 19050817 -25856753 - LTR40a LTR ERVL -317 202 61 2229 82 11 0 chr21 19051075 19051378 -25856192 + AluY SINE Alu 1 306 0 1419 206 69 53 chr21 19051843 19052222 -25855348 - MLT1B LTR MaLR -3 387 3 2375 87 0 3 chr21 19052228 19052540 -25855030 - AluY SINE Alu 0 311 1 2062 246 46 6 chr21 19053028 19053549 -25854021 - REP3 LTR ERV -20 542 1 1120 229 156 49 chr21 19055240 19055690 -25851880 - MLT1D LTR MaLR -1 504 7 1135 359 29 26 chr21 19056140 19057078 -25850492 + ERVL LTR ERVL 3686 4598 -887 2316 90 33 41 chr21 19057138 19057505 -25850065 + THE1B LTR MaLR 1 364 0 481 347 38 8 chr21 19058284 19058546 -25849024 + LTR16A LTR ERVL 1 270 -180 25 0 0 0 chr21 19059031 19059056 -25848514 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 19059382 19059403 -25848167 + AT_rich Low_complexity Low_complexity 1 21 0 302 0 0 26 chr21 19059785 19059824 -25847746 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 435 225 83 17 chr21 19059905 19060025 -25847545 + LTR50 LTR ERVL 1 128 -667 774 256 47 38 chr21 19060031 19060348 -25847222 + L1ME2 LINE L1 5844 6163 -1 390 273 36 30 chr21 19060398 19060424 -25847146 + L1ME3A LINE L1 5935 5959 -211 231 61 0 0 chr21 19060424 19060457 -25847113 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2022 103 0 25 chr21 19060464 19060745 -25846825 - AluSx SINE Alu -38 274 1 390 273 36 30 chr21 19060745 19060875 -25846695 + L1ME3A LINE L1 5964 6100 -70 316 0 45 0 chr21 19060877 19060921 -25846649 + (TA)n Simple_repeat Simple_repeat 2 47 0 319 187 22 14 chr21 19062675 19062814 -25844756 + (TA)n Simple_repeat Simple_repeat 1 140 0 386 361 84 0 chr21 19063316 19063507 -25844063 - MIR SINE MIR -10 252 46 29 60 0 0 chr21 19064933 19064983 -25842587 + AT_rich Low_complexity Low_complexity 1 50 0 2047 123 0 35 chr21 19065685 19065995 -25841575 - AluSg SINE Alu -11 299 1 530 287 44 19 chr21 19066497 19066673 -25840897 + MER58B DNA MER1_type 36 341 0 2332 104 8 8 chr21 19068538 19068895 -25838675 + L1PA13 LINE L1 5799 6155 -8 268 197 273 0 chr21 19069196 19069262 -25838308 - FLAM_A SINE Alu -5 128 45 390 42 0 0 chr21 19069336 19069384 -25838186 + (CA)n Simple_repeat Simple_repeat 2 49 0 1245 198 31 38 chr21 19070096 19070384 -25837186 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr21 19070440 19070473 -25837097 + AT_rich Low_complexity Low_complexity 1 33 0 40 49 0 0 chr21 19071253 19071314 -25836256 + AT_rich Low_complexity Low_complexity 1 61 0 1109 43 0 0 chr21 19071658 19071796 -25835774 - L1PA5 LINE L1 0 6154 6017 238 357 33 93 chr21 19072506 19072806 -25834764 - L2 LINE L2 -44 3228 2947 1343 264 112 37 chr21 19073190 19073719 -25833851 + MLT1F1 LTR MaLR 3 567 0 360 262 138 7 chr21 19074143 19074288 -25833282 - L2 LINE L2 -942 2372 2209 209 186 0 0 chr21 19076405 19076448 -25831122 + GA-rich Low_complexity Low_complexity 2 44 0 375 23 0 0 chr21 19076451 19076495 -25831075 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr21 19076805 19076826 -25830744 + AT_rich Low_complexity Low_complexity 1 21 0 2072 112 0 7 chr21 19077001 19077296 -25830274 - AluSg SINE Alu -17 293 1 209 250 18 0 chr21 19077619 19077675 -25829895 + (TA)n Simple_repeat Simple_repeat 1 57 0 207 152 0 0 chr21 19077705 19077751 -25829819 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr21 19078088 19078118 -25829452 + AT_rich Low_complexity Low_complexity 1 30 0 218 321 5 92 chr21 19078764 19078948 -25828622 - L2 LINE L2 -188 3084 2917 440 337 25 10 chr21 19079414 19079610 -25827960 + L2 LINE L2 2378 2576 -738 335 277 54 9 chr21 19079734 19079846 -25827724 + L1MCc LINE L1 13 129 -6294 668 217 96 29 chr21 19079846 19080086 -25827484 + L1MCc LINE L1 1277 1532 -4891 741 269 97 38 chr21 19080382 19080469 -25827101 + L1MCc LINE L1 2492 2572 -4369 912 236 4 31 chr21 19080469 19080694 -25826876 + MER20 DNA MER1_type 1 219 0 741 269 97 38 chr21 19080694 19081357 -25826213 + L1MCc LINE L1 2572 3215 -3726 2024 290 52 24 chr21 19081384 19082527 -25825043 + L1MCc LINE L1 3286 4461 -2480 258 213 0 156 chr21 19082535 19082676 -25824894 + L1MCc LINE L1 4800 4918 -2023 * 689 222 82 35 chr21 19082659 19082916 -25824654 + L1MCc LINE L1 5230 5498 -1443 569 270 18 16 chr21 19082927 19083193 -25824377 + L1MCc LINE L1 5964 6233 -743 953 276 41 22 chr21 19083200 19083566 -25824004 - L1M4 LINE L1 -1072 5074 4702 433 270 11 86 chr21 19083566 19083740 -25823830 + L2 LINE L2 3148 3308 -5 813 241 89 66 chr21 19083867 19084322 -25823248 - Charlie4a DNA MER1_type -1458 503 35 12578 158 34 22 chr21 19084322 19084559 -25823011 - Tigger1 DNA MER2_type 0 2418 2185 210 37 0 0 chr21 19084559 19084586 -25822984 + (TTG)n Simple_repeat Simple_repeat 1 27 0 12578 158 34 22 chr21 19084586 19086736 -25820834 - Tigger1 DNA MER2_type -233 2185 2 813 241 89 66 chr21 19086736 19086752 -25820818 - Charlie4a DNA MER1_type -1926 35 21 1604 201 0 7 chr21 19087683 19087976 -25819594 + AluJo SINE Alu 11 301 -11 1786 149 3 13 chr21 19088935 19089236 -25818334 - AluSx SINE Alu -14 298 1 2198 125 0 0 chr21 19089981 19090277 -25817293 - AluSx SINE Alu -16 296 1 3367 90 14 34 chr21 19090313 19090814 -25816756 + L1PA8A LINE L1 5629 6119 -12 2091 104 34 0 chr21 19090820 19091117 -25816453 + AluY SINE Alu 1 307 -4 501 343 107 66 chr21 19091117 19091648 -25815922 - L2 LINE L2 -2704 610 58 23 33 0 0 chr21 19092176 19092206 -25815364 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr21 19092495 19092532 -25815038 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr21 19093654 19093682 -25813888 + AT_rich Low_complexity Low_complexity 1 28 0 2129 161 46 15 chr21 19094039 19094430 -25813140 - MER61D LTR ERV1 0 501 99 20487 123 27 15 chr21 19094445 19094706 -25812864 - MER61D-int LTR ERV1 0 5217 4961 2022 122 0 14 chr21 19094706 19095002 -25812568 + AluSx SINE Alu 5 296 -16 20487 123 27 15 chr21 19095002 19097946 -25809624 - MER61D-int LTR ERV1 -256 4961 1972 2635 153 2 13 chr21 19097925 19098464 -25809106 - MER61D-int LTR ERV1 -3574 2012 1214 * 1157 109 11 11 chr21 19098465 19098640 -25808930 - MER61D LTR ERV1 -184 317 143 2452 173 106 98 chr21 19098640 19099637 -25807933 - MER61D-int LTR ERV1 -4060 1157 153 297 103 0 17 chr21 19099647 19099705 -25807865 + Alu SINE Alu 1 57 -243 3533 129 9 9 chr21 19099705 19100263 -25807307 - MER61-int LTR ERV1 -2066 3151 2594 1121 82 0 13 chr21 19100267 19100425 -25807145 + AluSc SINE Alu 70 225 -84 1728 187 128 40 chr21 19100425 19100927 -25806643 + LTR10A LTR ERV1 3 548 -61 574 49 12 0 chr21 19100940 19101022 -25806548 + AluSc SINE Alu 220 302 -7 32 67 0 0 chr21 19101128 19101188 -25806382 + AT_rich Low_complexity Low_complexity 1 60 0 283 292 62 90 chr21 19102113 19102401 -25805169 + MLT1I LTR MaLR 102 381 -28 958 212 99 75 chr21 19105812 19105922 -25801648 + MER31B LTR ERV1 3 109 -357 1743 180 3 7 chr21 19105922 19106217 -25801353 + AluJo SINE Alu 1 294 -18 958 212 99 75 chr21 19106217 19106559 -25801011 + MER31B LTR ERV1 109 466 0 1116 159 84 1 chr21 19106639 19107041 -25800529 - MER31A LTR ERV1 -6 479 1 2642 199 81 32 chr21 19107324 19108063 -25799507 + LTR48 LTR ERV1 7 699 -8 28 29 0 0 chr21 19109330 19109365 -25798205 + AT_rich Low_complexity Low_complexity 1 35 0 256 315 44 3 chr21 19109461 19109625 -25797945 - MER110 LTR ERV1 -2 466 329 1932 208 88 11 chr21 19109627 19110094 -25797476 + MER67C LTR ERV1 3 505 -205 1131 165 128 4 chr21 19110095 19110338 -25797232 + MER47A DNA MER2_type 2 274 -92 * 3637 156 99 3 chr21 19110331 19110974 -25796596 + MER50 LTR ERV1 7 711 -23 538 189 11 0 chr21 19110974 19111069 -25796501 + MER47A DNA MER2_type 271 366 0 * 1048 171 9 23 chr21 19111069 19111233 -25796337 + MER67C LTR ERV1 504 666 -44 2387 85 3 0 chr21 19111233 19111538 -25796032 + AluY SINE Alu 1 306 -5 1048 171 9 23 chr21 19111538 19111580 -25795990 + MER67C LTR ERV1 666 707 -3 245 311 0 14 chr21 19111584 19111658 -25795912 - MER110 LTR ERV1 -192 299 227 2353 192 164 28 chr21 19111814 19112501 -25795069 + LTR48 LTR ERV1 7 787 0 381 244 38 30 chr21 19112501 19112628 -25794942 - MER110A LTR ERV1 -339 129 2 3900 170 30 36 chr21 19112695 19113482 -25794088 + LTR39 LTR ERV1 1 783 0 225 259 74 0 chr21 19113875 19113956 -25793614 - MLT1L LTR MaLR -76 539 453 183 42 0 0 chr21 19114605 19114629 -25792941 + (TA)n Simple_repeat Simple_repeat 2 25 0 5379 100 1 3 chr21 19114788 19115549 -25792021 + L1PA11 LINE L1 5413 6172 -2 1601 165 19 0 chr21 19115810 19116070 -25791500 + AluJo SINE Alu 23 287 -25 22 0 0 0 chr21 19116148 19116170 -25791400 + AT_rich Low_complexity Low_complexity 1 22 0 557 332 37 0 chr21 19116197 19116387 -25791183 - MIR SINE MIR -38 224 28 2047 109 3 3 chr21 19116852 19117183 -25790387 - AluSc SINE Alu 0 331 1 1338 157 39 26 chr21 19117650 19117879 -25789691 + MER1B DNA MER1_type 59 290 -49 1775 129 40 18 chr21 19118739 19119017 -25788553 + THE1B LTR MaLR 1 284 -80 1369 68 0 0 chr21 19119881 19120058 -25787512 + AluY SINE Alu 135 311 0 21 0 0 0 chr21 19120527 19120548 -25787022 + AT_rich Low_complexity Low_complexity 1 21 0 501 270 76 38 chr21 19120670 19120855 -25786715 + MER63A DNA MER1_type 1 192 -18 553 232 83 18 chr21 19121016 19121184 -25786386 - MER58A DNA MER1_type -1 223 45 536 168 0 9 chr21 19124420 19124527 -25783043 + FLAM_C SINE Alu 36 141 -2 526 237 96 40 chr21 19124529 19124706 -25782864 - MLT1L LTR MaLR -87 528 342 1780 154 18 7 chr21 19125263 19125573 -25781997 + AluSx SINE Alu 1 313 0 453 333 108 0 chr21 19125723 19125909 -25781661 + MIR SINE MIR 9 214 -48 1889 127 67 51 chr21 19127148 19127479 -25780091 + MER1B DNA MER1_type 1 336 -1 26 50 0 0 chr21 19127760 19127800 -25779770 + AT_rich Low_complexity Low_complexity 1 40 0 602 292 59 50 chr21 19128060 19128584 -25778986 + Charlie7 DNA MER1_type 1576 2104 -508 29 78 0 0 chr21 19129066 19129130 -25778440 + AT_rich Low_complexity Low_complexity 1 64 0 258 167 154 0 chr21 19129139 19129217 -25778353 - MLT1L LTR MaLR -8 607 518 1072 231 166 92 chr21 19129525 19130134 -25777436 - MLT1E1 LTR MaLR 0 654 1 264 256 126 82 chr21 19131814 19132021 -25775549 - L3b LINE CR1 -4 1579 1364 848 214 24 0 chr21 19133776 19133944 -25773626 - MLT1A1 LTR MaLR 0 365 194 242 301 131 104 chr21 19134324 19134583 -25772987 - MLT1J2 LTR MaLR -132 318 53 793 289 19 27 chr21 19134919 19135182 -25772388 - MIR SINE MIR 0 262 2 2566 30 0 3 chr21 19135351 19135652 -25771918 - AluY SINE Alu -11 300 1 242 299 0 15 chr21 19135692 19135759 -25771811 + L2 LINE L2 3229 3294 -19 35 0 0 0 chr21 19135949 19135984 -25771586 + AT_rich Low_complexity Low_complexity 1 35 0 4870 167 9 16 chr21 19136003 19136943 -25770627 - L1PB4 LINE L1 -1 6155 5222 185 309 15 15 chr21 19138989 19139057 -25768513 + L3 LINE CR1 986 1053 -524 5084 167 14 3 chr21 19139449 19140364 -25767206 - L1MA4 LINE L1 0 6300 5376 184 220 169 0 chr21 19140571 19140630 -25766940 + L2 LINE L2 3192 3260 -12 24 0 0 0 chr21 19140714 19140738 -25766832 + AT_rich Low_complexity Low_complexity 1 24 0 573 121 12 0 chr21 19142682 19142765 -25764805 - AluJb SINE Alu -17 295 212 1561 254 79 23 chr21 19142772 19143381 -25764189 - LTR48B LTR ERV1 -1 643 1 271 170 0 179 chr21 19143381 19143487 -25764083 + MLT1C LTR MaLR 61 147 -320 * 911 207 10 29 chr21 19143485 19143693 -25763877 + MLT1C LTR MaLR 264 467 0 1921 156 27 30 chr21 19143724 19144089 -25763481 - THE1C LTR MaLR 0 375 12 2511 104 16 19 chr21 19144655 19145031 -25762539 - THE1C LTR MaLR 0 375 1 195 220 0 0 chr21 19145037 19145087 -25762483 + CT-rich Low_complexity Low_complexity 3 52 0 324 0 0 0 chr21 19145134 19145170 -25762400 + (TA)n Simple_repeat Simple_repeat 2 37 0 2597 40 0 3 chr21 19145170 19145470 -25762100 - AluY SINE Alu -12 299 1 2201 136 30 22 chr21 19145742 19146103 -25761467 - THE1B LTR MaLR 0 364 1 439 200 0 0 chr21 19149639 19149724 -25757846 + MER67D LTR ERV1 1 85 -429 676 241 70 0 chr21 19149878 19150065 -25757505 + MER67D LTR ERV1 310 509 -5 22 56 0 0 chr21 19151106 19151142 -25756428 + AT_rich Low_complexity Low_complexity 1 36 0 229 255 0 0 chr21 19151143 19151190 -25756380 - MIR SINE MIR -208 54 8 2386 43 0 0 chr21 19151243 19151562 -25756008 + AluY SINE Alu 5 323 0 261 337 109 27 chr21 19151705 19151889 -25755681 - MIR SINE MIR 0 262 64 229 136 30 0 chr21 19152139 19152205 -25755365 + (CA)n Simple_repeat Simple_repeat 1 68 0 190 156 31 0 chr21 19152237 19152301 -25755269 + (CA)n Simple_repeat Simple_repeat 1 66 0 190 156 31 0 chr21 19152333 19152397 -25755173 + (CA)n Simple_repeat Simple_repeat 1 66 0 1391 102 68 34 chr21 19153331 19153567 -25754003 - L1PA14 LINE L1 -6 6155 5912 1725 110 8 0 chr21 19154360 19154596 -25752974 + AluSq SINE Alu 1 238 -75 469 186 23 0 chr21 19155333 19155419 -25752151 + FLAM_A SINE Alu 37 124 -18 1059 309 36 18 chr21 19155481 19155872 -25751698 - LTR16C LTR ERVL -4 487 90 244 286 48 82 chr21 19156019 19156200 -25751370 - L1MC/D LINE L1 -2260 5548 5379 2494 88 0 0 chr21 19156200 19156508 -25751062 - AluSp SINE Alu -5 308 1 244 286 48 82 chr21 19156508 19156620 -25750950 - L1MC/D LINE L1 -2429 5379 5265 5006 153 36 39 chr21 19156871 19157161 -25750409 - L1MA5A LINE L1 0 6297 6008 3434 111 6 14 chr21 19157161 19157676 -25749894 + MER9 LTR ERVK 1 511 0 5006 153 36 39 chr21 19157676 19158620 -25748950 - L1MA5A LINE L1 -289 6008 5061 682 231 0 0 chr21 19159179 19159300 -25748270 + FLAM_A SINE Alu 2 122 -11 286 189 40 0 chr21 19159326 19159400 -25748170 + L1MB2 LINE L1 6094 6170 -1 2154 120 3 0 chr21 19159402 19159694 -25747876 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr21 19159699 19159731 -25747839 + AT_rich Low_complexity Low_complexity 1 32 0 402 291 51 0 chr21 19160980 19161097 -25746473 + MLT1J1 LTR MaLR 1 123 -323 1653 165 88 3 chr21 19161105 19161390 -25746180 + THE1-int LTR MaLR 797 1105 -475 1101 258 16 0 chr21 19161684 19161936 -25745634 - MLT1A1 LTR MaLR 0 365 110 339 133 13 0 chr21 19162037 19162097 -25745473 + LTR41 LTR ERVL 715 795 0 1909 271 134 49 chr21 19162161 19162875 -25744695 + HAL1 LINE L1 617 1269 -1238 2300 89 0 3 chr21 19162875 19163168 -25744402 + AluSx SINE Alu 8 299 -13 1909 271 134 49 chr21 19163168 19164052 -25743518 + HAL1 LINE L1 1269 2351 -156 2359 90 0 6 chr21 19164139 19164451 -25743119 - AluY SINE Alu -1 310 1 231 301 0 0 chr21 19164454 19164527 -25743043 + HAL1 LINE L1 2430 2502 -5 2197 116 3 0 chr21 19164962 19165272 -25742298 - AluSx SINE Alu -1 311 1 412 387 0 28 chr21 19166026 19166238 -25741332 + L3 LINE CR1 1352 1557 -20 252 0 0 0 chr21 19167011 19167039 -25740531 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 22 0 0 0 chr21 19167603 19167625 -25739945 + AT_rich Low_complexity Low_complexity 1 22 0 2181 189 29 10 chr21 19167928 19168346 -25739224 - MSTB1 LTR MaLR -6 426 1 288 299 37 37 chr21 19168465 19168572 -25738998 - MIR SINE MIR -151 111 5 3774 141 10 72 chr21 19169967 19170699 -25736871 - LTR8 LTR ERV1 -5 686 1 450 228 20 0 chr21 19171173 19171274 -25736296 - MIR SINE MIR 0 262 160 1966 200 83 33 chr21 19171276 19171756 -25735814 - MLT1D LTR MaLR -1 504 1 551 275 84 14 chr21 19171760 19171902 -25735668 - MIR SINE MIR -109 153 2 388 263 6 70 chr21 19172279 19172435 -25735135 + MER5A DNA MER1_type 43 188 -1 715 191 98 17 chr21 19172466 19172639 -25734931 + MER20 DNA MER1_type 1 187 -32 21 36 0 0 chr21 19172843 19172871 -25734699 + AT_rich Low_complexity Low_complexity 1 28 0 2404 94 0 0 chr21 19172999 19173306 -25734264 + AluSc SINE Alu 1 307 -2 361 220 154 0 chr21 19173353 19173444 -25734126 + MIR SINE MIR 38 142 -120 48 43 0 0 chr21 19175788 19175857 -25731713 + AT_rich Low_complexity Low_complexity 1 69 0 269 333 22 15 chr21 19176028 19176163 -25731407 + (TATATG)n Simple_repeat Simple_repeat 5 140 0 1016 139 0 0 chr21 19176234 19176399 -25731171 + L1MA4 LINE L1 6129 6293 -7 28 0 0 0 chr21 19176482 19176510 -25731060 + AT_rich Low_complexity Low_complexity 1 28 0 379 352 26 23 chr21 19177535 19177793 -25729777 - MLT1J2 LTR MaLR -245 205 2 221 0 35 0 chr21 19178112 19178141 -25729429 + (CATA)n Simple_repeat Simple_repeat 3 32 0 297 167 0 0 chr21 19178620 19178674 -25728896 + GA-rich Low_complexity Low_complexity 3 56 0 228 220 68 0 chr21 19178769 19178828 -25728742 - MLT1L LTR MaLR -8 607 545 1469 194 45 45 chr21 19179398 19179779 -25727791 + MLT1B LTR MaLR 10 390 0 204 97 0 0 chr21 19179857 19179888 -25727682 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 359 220 156 96 chr21 19180669 19180887 -25726683 - MER46C DNA MER2_type -107 231 1 202 309 128 0 chr21 19180907 19181001 -25726569 - MIR SINE MIR -123 139 34 264 284 0 0 chr21 19182312 19182379 -25725191 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 27 0 0 0 chr21 19182382 19182409 -25725161 + AT_rich Low_complexity Low_complexity 1 27 0 5545 122 40 7 chr21 19182508 19183562 -25724008 - L1PA14 LINE L1 -1 6160 5098 328 188 12 12 chr21 19185727 19185812 -25721758 + CT-rich Low_complexity Low_complexity 2 86 0 357 292 53 0 chr21 19186291 19186404 -25721166 + MIR3 SINE MIR 81 199 -9 1030 86 33 0 chr21 19186548 19186699 -25720871 - L1PA11 LINE L1 -1 6173 6018 367 187 23 8 chr21 19187131 19187222 -25720348 + LTR16C LTR ERVL 358 482 -4 189 0 0 0 chr21 19187249 19187270 -25720300 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr21 19187599 19187622 -25719948 + AT_rich Low_complexity Low_complexity 1 23 0 645 284 34 80 chr21 19187749 19188022 -25719548 + L2 LINE L2 2349 2604 -710 458 136 118 55 chr21 19188022 19188132 -25719438 + FLAM_C SINE Alu 5 121 -12 645 284 34 80 chr21 19188132 19188207 -25719363 + L2 LINE L2 2604 2681 -633 460 283 189 0 chr21 19188382 19188562 -25719008 + L2 LINE L2 2725 2938 -376 23 0 0 0 chr21 19189181 19189204 -25718366 + AT_rich Low_complexity Low_complexity 1 23 0 1737 163 11 0 chr21 19191122 19191436 -25716134 - AluJo SINE Alu 0 319 3 350 331 24 36 chr21 19191750 19191916 -25715654 + L2 LINE L2 3150 3313 0 191 373 38 57 chr21 19191960 19192118 -25715452 - MIR3 SINE MIR -47 161 7 443 288 27 14 chr21 19192359 19192505 -25715065 - L3 LINE CR1 -751 826 679 1638 218 43 48 chr21 19192608 19193071 -25714499 - MLT1C LTR MaLR 0 467 7 189 0 0 0 chr21 19193234 19193255 -25714315 + (TG)n Simple_repeat Simple_repeat 2 22 0 2343 78 0 3 chr21 19193369 19193663 -25713907 - AluSc SINE Alu -16 293 1 22 0 0 0 chr21 19194532 19194554 -25713016 + AT_rich Low_complexity Low_complexity 1 22 0 746 134 0 8 chr21 19195414 19195533 -25712037 - FLAM_C SINE Alu -25 118 1 369 114 0 43 chr21 19196503 19196573 -25710997 - L1MC2 LINE L1 -130 6214 6148 271 45 68 0 chr21 19196608 19196652 -25710918 + L1MC2 LINE L1 6150 6196 -148 * 1238 194 30 11 chr21 19196616 19196879 -25710691 - L1MC2 LINE L1 -160 6184 5917 21 89 0 0 chr21 19197331 19197387 -25710183 + AT_rich Low_complexity Low_complexity 1 56 0 196 120 40 0 chr21 19198750 19198800 -25708770 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr21 19199970 19199994 -25707576 + (TC)n Simple_repeat Simple_repeat 2 25 0 311 319 81 38 chr21 19201097 19201257 -25706313 + MLT1L LTR MaLR 110 276 -339 283 211 0 92 chr21 19201653 19201729 -25705841 + LTR40a LTR ERVL 1 69 -450 290 369 33 8 chr21 19201931 19202053 -25705517 + LTR40a LTR ERVL 237 361 -158 334 175 18 0 chr21 19202165 19202222 -25705348 + LTR40b LTR ERVL 397 454 -8 192 152 0 0 chr21 19202453 19202486 -25705084 + L2 LINE L2 2703 2735 -579 1650 254 28 24 chr21 19202871 19203410 -25704160 - MLT1F LTR MaLR 0 542 2 4896 133 13 1 chr21 19204443 19205917 -25701653 - L1PA16 LINE L1 -9 6157 4705 1121 262 80 31 chr21 19207981 19208405 -25699165 + MSTB2 LTR MaLR 1 445 -12 1602 204 64 12 chr21 19208741 19209085 -25698485 + MLT1A1 LTR MaLR 4 365 0 187 366 65 57 chr21 19209377 19209500 -25698070 - L2 LINE L2 -33 3239 3116 289 262 95 40 chr21 19211645 19211771 -25695799 - L2 LINE L2 -5 3308 3176 1392 179 47 50 chr21 19212245 19212542 -25695028 - AluJo SINE Alu -16 296 1 219 282 120 49 chr21 19212860 19213002 -25694568 + MIR SINE MIR 36 187 -75 2052 183 49 2 chr21 19213259 19213668 -25693902 + MSTA LTR MaLR 1 428 0 597 171 0 0 chr21 19215206 19215323 -25692247 + (TG)n Simple_repeat Simple_repeat 2 118 0 2244 107 3 0 chr21 19215516 19215816 -25691754 - AluSp SINE Alu -12 301 1 585 275 101 4 chr21 19216742 19216989 -25690581 - LTR33A LTR ERVL -22 501 231 1592 187 62 30 chr21 19217067 19217436 -25690134 + MLT1B LTR MaLR 1 381 -9 250 222 341 15 chr21 19217619 19217754 -25689816 - MIR SINE MIR -82 180 2 360 0 0 0 chr21 19217892 19217932 -25689638 + (TG)n Simple_repeat Simple_repeat 1 40 0 1531 176 23 0 chr21 19218082 19218338 -25689232 - AluJb SINE Alu -20 292 31 219 167 0 0 chr21 19218394 19218436 -25689134 + (TG)n Simple_repeat Simple_repeat 2 43 0 1204 119 5 25 chr21 19219714 19219915 -25687655 + L1PA11 LINE L1 5977 6173 -1 2420 49 0 7 chr21 19220166 19220470 -25687100 + AluY SINE Alu 1 302 -9 926 201 67 24 chr21 19221486 19221695 -25685875 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 19222473 19222501 -25685069 + AT_rich Low_complexity Low_complexity 1 28 0 623 243 118 7 chr21 19222685 19222829 -25684741 + MER45A DNA AcHobo 18 177 -1 1596 195 7 0 chr21 19222995 19223292 -25684278 + L1PB4 LINE L1 5808 6106 -50 2663 98 5 5 chr21 19223292 19223668 -25683902 + MLT2A1 LTR ERVL 1 376 -68 237 316 15 23 chr21 19223668 19223801 -25683769 + (CATATA)n Simple_repeat Simple_repeat 1 132 0 * 326 243 36 7 chr21 19223706 19223846 -25683724 + (TA)n Simple_repeat Simple_repeat 1 144 0 359 91 0 0 chr21 19223852 19223907 -25683663 + MLT2A1 LTR ERVL 390 444 0 243 125 0 21 chr21 19223907 19223955 -25683615 + L1PA16 LINE L1 6102 6148 -18 337 266 89 32 chr21 19223981 19224105 -25683465 - MER20 DNA MER1_type -8 211 81 1942 131 10 10 chr21 19224677 19224989 -25682581 + AluSx SINE Alu 1 312 0 25 0 0 0 chr21 19226124 19226149 -25681421 + AT_rich Low_complexity Low_complexity 1 25 0 2205 69 3 38 chr21 19226820 19227140 -25680430 + AluY SINE Alu 1 309 -2 339 345 99 0 chr21 19227323 19227494 -25680076 - MIR SINE MIR -74 188 1 28 61 0 0 chr21 19228085 19228134 -25679436 + AT_rich Low_complexity Low_complexity 1 49 0 327 311 27 20 chr21 19228232 19228553 -25679017 + L1MC/D LINE L1 2171 2456 -3759 1971 148 0 0 chr21 19228679 19228977 -25678593 - AluSx SINE Alu -14 298 1 1918 162 0 10 chr21 19229526 19229929 -25677641 - AluJb SINE Alu 0 405 6 21 0 0 0 chr21 19230391 19230412 -25677158 + AT_rich Low_complexity Low_complexity 1 21 0 249 282 70 14 chr21 19230641 19230783 -25676787 + L1MC/D LINE L1 2739 2888 -3327 2428 151 51 7 chr21 19230783 19231193 -25676377 - MSTA LTR MaLR 0 428 1 389 318 109 55 chr21 19231365 19232032 -25675538 + L1MC/D LINE L1 3152 3854 -2361 2571 42 0 0 chr21 19232674 19232980 -25674590 + AluY SINE Alu 1 306 -5 553 258 85 31 chr21 19232993 19233253 -25674317 + L1MC/D LINE L1 5355 5628 -2249 5091 159 13 8 chr21 19233282 19234568 -25673002 - L1PA16 LINE L1 -4 6162 4874 5520 221 17 15 chr21 19234569 19235873 -25671697 + L1P LINE L1 3382 4688 -1458 295 225 12 0 chr21 19235875 19235955 -25671615 + L1 LINE L1 4786 4866 -1280 190 143 41 0 chr21 19236236 19236285 -25671285 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 191 273 15 30 chr21 19236702 19236768 -25670802 + MIR SINE MIR 82 146 -62 1911 126 4 4 chr21 19236959 19237284 -25670286 + AluSc SINE Alu 1 325 0 33 43 0 0 chr21 19237498 19237545 -25670025 + AT_rich Low_complexity Low_complexity 1 47 0 317 118 24 24 chr21 19237545 19237630 -25669940 + (TA)n Simple_repeat Simple_repeat 2 86 0 367 51 17 17 chr21 19238623 19238682 -25668888 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 199 229 0 0 chr21 19238760 19238795 -25668775 - L2 LINE L2 -14 3299 3265 6413 65 33 4 chr21 19239226 19240199 -25667371 - L1PA7 LINE L1 -6 6148 5151 21827 132 18 87 chr21 19240209 19244616 -25662954 + L1P LINE L1 12 4115 -2031 261 0 0 0 chr21 19244971 19245000 -25662570 + (TG)n Simple_repeat Simple_repeat 2 30 0 4928 116 7 7 chr21 19245707 19246438 -25661132 + LTR17 LTR ERV1 1 731 -49 24 32 0 0 chr21 19246490 19246521 -25661049 + AT_rich Low_complexity Low_complexity 1 31 0 2072 226 117 5 chr21 19247270 19247859 -25659711 + L1MC4 LINE L1 7080 7734 -308 21 57 0 0 chr21 19248275 19248310 -25659260 + AT_rich Low_complexity Low_complexity 1 35 0 299 109 0 0 chr21 19248481 19248527 -25659043 + MADE1 DNA Mariner 35 80 0 579 255 86 115 chr21 19249275 19249683 -25657887 + MLT1J2 LTR MaLR 34 429 -21 220 402 0 0 chr21 19250191 19250298 -25657272 - MIR SINE MIR -33 229 123 225 65 0 0 chr21 19253164 19253195 -25654375 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1959 143 7 10 chr21 19253730 19254038 -25653532 - AluSx SINE Alu 0 312 6 21 36 0 0 chr21 19254621 19254649 -25652921 + AT_rich Low_complexity Low_complexity 1 28 0 7957 87 11 0 chr21 19254724 19256142 -25651428 + L1P3 LINE L1 4242 5670 -484 318 50 0 0 chr21 19256412 19256452 -25651118 + (CA)n Simple_repeat Simple_repeat 2 41 0 670 131 0 0 chr21 19256508 19256607 -25650963 + AluSp/q SINE Alu 187 285 -28 1839 169 22 34 chr21 19257261 19257522 -25650048 - MER47A DNA MER2_type -1960 363 106 2045 131 123 11 chr21 19257522 19257903 -25649667 - MSTA LTR MaLR -4 424 1 1839 169 22 34 chr21 19257903 19257996 -25649574 - MER47A DNA MER2_type -2217 106 13 1381 244 110 21 chr21 19258029 19258447 -25649123 - MLT2B1 LTR ERVL -65 455 1 293 319 32 0 chr21 19258859 19258953 -25648617 - L2 LINE L2 -3 3310 3214 240 86 0 0 chr21 19260338 19260373 -25647197 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 185 243 81 27 chr21 19260866 19260940 -25646630 + MER5B DNA MER1_type 101 178 0 334 326 163 0 chr21 19260948 19261089 -25646481 - MER5A DNA MER1_type 0 189 26 25 0 0 0 chr21 19261388 19261413 -25646157 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 19261528 19261563 -25646007 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr21 19263767 19263798 -25643772 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr21 19264226 19264268 -25643302 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr21 19264290 19264320 -25643250 + AT_rich Low_complexity Low_complexity 1 30 0 222 315 47 34 chr21 19264585 19264734 -25642836 + L2 LINE L2 1865 2015 -1299 1464 241 99 56 chr21 19265119 19265746 -25641824 + MLT1E1 LTR MaLR 1 654 0 1318 271 80 8 chr21 19265746 19266245 -25641325 - L1ME3A LINE L1 -88 6082 5548 406 301 95 47 chr21 19266255 19266793 -25640777 - L1ME3A LINE L1 -845 5301 4738 262 326 29 12 chr21 19266808 19266883 -25640687 - L1ME3A LINE L1 -1446 4700 4628 369 0 0 0 chr21 19266883 19266924 -25640646 + (CA)n Simple_repeat Simple_repeat 2 42 0 262 326 29 12 chr21 19266924 19267020 -25640550 - L1ME3A LINE L1 -1518 4628 4526 32 26 0 0 chr21 19267051 19267090 -25640480 + AT_rich Low_complexity Low_complexity 1 39 0 474 279 76 66 chr21 19267666 19268243 -25639327 - L1ME3A LINE L1 -1795 4351 3769 1261 211 199 12 chr21 19268273 19268686 -25638884 - LTR54B LTR ERV1 -1 497 8 281 240 66 27 chr21 19268689 19268872 -25638698 - L1ME3A LINE L1 -3845 2301 2112 24 67 0 0 chr21 19269959 19270004 -25637566 + AT_rich Low_complexity Low_complexity 1 45 0 2063 106 3 0 chr21 19271465 19271776 -25635794 + AluSq SINE Alu 1 312 0 417 198 0 0 chr21 19271776 19271862 -25635708 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 192 97 0 0 chr21 19272620 19272651 -25634919 + (TC)n Simple_repeat Simple_repeat 2 32 0 191 356 148 0 chr21 19272738 19272853 -25634717 + MIR SINE MIR 52 183 -79 350 294 28 18 chr21 19273480 19273589 -25633981 - MIR SINE MIR -59 149 40 4309 20 0 0 chr21 19273617 19274300 -25633270 + L1P1 LINE L1 5074 5756 -399 1121 141 90 0 chr21 19275968 19276145 -25631425 - AluSx SINE Alu -118 194 2 897 217 30 5 chr21 19276268 19276471 -25631099 - MER3 DNA MER1_type -1 208 1 10289 103 14 0 chr21 19276842 19278194 -25629376 + L1PA8 LINE L1 3841 5202 -970 2246 99 0 7 chr21 19278194 19278496 -25629074 + AluSg SINE Alu 1 300 -10 10289 103 14 0 chr21 19278496 19279477 -25628093 + L1PA8 LINE L1 5202 6167 -5 737 216 133 69 chr21 19281002 19281364 -25626206 - LTR37A LTR ERV1 0 426 42 22 56 0 0 chr21 19281371 19281407 -25626163 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr21 19281567 19281588 -25625982 + AT_rich Low_complexity Low_complexity 1 21 0 511 291 26 0 chr21 19282539 19282690 -25624880 + MIR SINE MIR 56 210 -52 652 230 0 0 chr21 19283112 19283238 -25624332 + FRAM SINE Alu 1 123 -53 1832 205 32 15 chr21 19283238 19283642 -25623928 - L1MA10 LINE L1 -21 6313 5903 * 1979 177 7 27 chr21 19283631 19284043 -25623527 + L1MA10 LINE L1 5483 5886 -282 195 69 0 0 chr21 19285366 19285395 -25622175 + (TAA)n Simple_repeat Simple_repeat 2 30 0 211 234 0 0 chr21 19285551 19285598 -25621972 + (TA)n Simple_repeat Simple_repeat 1 47 0 222 96 39 19 chr21 19288290 19288342 -25619228 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 535 73 0 0 chr21 19288657 19288755 -25618815 - AluSp/q SINE Alu 0 318 221 184 29 29 29 chr21 19290266 19290300 -25617270 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1773 85 127 0 chr21 19290660 19290919 -25616651 + AluSg SINE Alu 1 292 -8 24 0 0 0 chr21 19291050 19291074 -25616496 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr21 19291145 19291181 -25616389 + AT_rich Low_complexity Low_complexity 1 36 0 384 260 23 12 chr21 19291208 19291381 -25616189 + (TA)n Simple_repeat Simple_repeat 1 175 0 29 78 0 0 chr21 19291444 19291508 -25616062 + AT_rich Low_complexity Low_complexity 1 64 0 345 47 0 0 chr21 19291741 19291784 -25615786 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 25 0 0 0 chr21 19293082 19293107 -25614463 + AT_rich Low_complexity Low_complexity 1 25 0 2235 47 0 43 chr21 19293473 19293772 -25613798 - AluY SINE Alu -9 302 17 369 0 0 0 chr21 19293886 19293927 -25613643 + (A)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 19294403 19294425 -25613145 + AT_rich Low_complexity Low_complexity 1 22 0 2115 81 20 14 chr21 19294702 19294998 -25612572 + AluSp SINE Alu 1 298 -15 5385 154 24 25 chr21 19295830 19296944 -25610626 - L1MA5 LINE L1 -1 7361 6248 6395 224 81 17 chr21 19296944 19297322 -25610248 - L1MA5 LINE L1 -1357 5851 5499 1951 153 0 13 chr21 19297322 19297629 -25609941 - AluSx SINE Alu -9 303 1 6395 224 81 17 chr21 19297629 19299928 -25607642 - L1MA5 LINE L1 -1709 5499 3349 1693 145 39 7 chr21 19299928 19300083 -25607487 - AluSx SINE Alu -21 291 122 279 0 0 0 chr21 19300083 19300114 -25607456 + (TG)n Simple_repeat Simple_repeat 1 31 0 1693 145 39 7 chr21 19300114 19300240 -25607330 - AluSx SINE Alu -190 122 1 6395 224 81 17 chr21 19300240 19300478 -25607092 - L1MA5 LINE L1 -3859 3349 3128 216 0 0 0 chr21 19300478 19300502 -25607068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6395 224 81 17 chr21 19300502 19300656 -25606914 - L1MA5 LINE L1 -4080 3128 2985 333 0 0 0 chr21 19300656 19300693 -25606877 + (TA)n Simple_repeat Simple_repeat 1 37 0 6395 224 81 17 chr21 19300693 19301841 -25605729 - L1MA5 LINE L1 -4223 2985 366 206 266 147 46 chr21 19301940 19302049 -25605521 + MIR3 SINE MIR 83 202 -6 2037 150 33 11 chr21 19303609 19303976 -25603594 - THE1C LTR MaLR 0 375 1 265 333 190 10 chr21 19304111 19304306 -25603264 + MIR SINE MIR 15 244 -18 2651 32 0 0 chr21 19304698 19305007 -25602563 + AluY SINE Alu 1 309 -2 246 349 31 31 chr21 19305439 19305568 -25602002 + MIR3 SINE MIR 48 176 -32 21 82 0 0 chr21 19305681 19305730 -25601840 + AT_rich Low_complexity Low_complexity 1 49 0 2003 120 0 7 chr21 19306691 19307139 -25600431 + AluSq SINE Alu 13 458 0 933 227 23 2 chr21 19307217 19307449 -25600121 + MLT1A1 LTR MaLR 1 251 -123 1620 163 18 7 chr21 19307881 19308158 -25599412 + AluSx SINE Alu 1 280 -32 245 144 44 0 chr21 19308162 19308252 -25599318 + (TA)n Simple_repeat Simple_repeat 2 95 0 568 200 44 62 chr21 19308385 19308545 -25599025 - MER20 DNA MER1_type -25 194 38 2077 94 0 7 chr21 19308797 19309083 -25598487 + AluY SINE Alu 1 284 -27 180 0 0 0 chr21 19309096 19309116 -25598454 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2021 107 17 10 chr21 19310016 19310305 -25597265 + AluSp SINE Alu 1 291 -22 23 0 0 0 chr21 19310305 19310328 -25597242 + AT_rich Low_complexity Low_complexity 1 23 0 294 247 113 0 chr21 19310384 19310481 -25597089 + L1ME4a LINE L1 5944 6051 -70 1299 214 140 17 chr21 19312899 19313249 -25594321 - MSTD LTR MaLR 0 396 4 334 68 17 17 chr21 19313799 19313858 -25593712 + (TC)n Simple_repeat Simple_repeat 1 59 0 2178 103 17 0 chr21 19314059 19314351 -25593219 - AluSg SINE Alu -13 297 1 378 0 0 0 chr21 19314541 19314583 -25592987 + (TG)n Simple_repeat Simple_repeat 1 42 0 761 203 123 5 chr21 19314587 19314774 -25592796 + MER2 DNA MER2_type 2 210 -135 188 228 18 0 chr21 19316192 19316249 -25591321 + (TAG)n Simple_repeat Simple_repeat 2 59 0 188 239 43 0 chr21 19316390 19316436 -25591134 - MIR SINE MIR -103 159 112 1661 182 24 7 chr21 19316511 19316802 -25590768 - AluSx SINE Alu -16 296 1 1484 272 15 48 chr21 19316807 19317039 -25590531 - L1MD2 LINE L1 -1 6358 6149 1908 167 14 16 chr21 19317039 19317404 -25590166 - MLT1A1 LTR MaLR 0 365 2 1484 272 15 48 chr21 19317404 19317645 -25589925 - L1MD2 LINE L1 -210 6149 5901 247 307 9 53 chr21 19317795 19317909 -25589661 + L2 LINE L2 3205 3313 0 21 0 0 0 chr21 19318289 19318310 -25589260 + AT_rich Low_complexity Low_complexity 1 21 0 266 250 0 0 chr21 19318895 19318963 -25588607 - L1MD1 LINE L1 -274 5968 5901 281 26 26 0 chr21 19320155 19320193 -25587377 + (TG)n Simple_repeat Simple_repeat 2 40 0 639 249 151 45 chr21 19320355 19320752 -25586818 + LTR33 LTR ERVL 83 521 0 2084 53 85 11 chr21 19321799 19322080 -25585490 + AluY SINE Alu 1 302 -9 23 33 0 0 chr21 19322357 19322387 -25585183 + AT_rich Low_complexity Low_complexity 1 30 0 494 226 174 7 chr21 19323144 19323299 -25584271 + MER5A DNA MER1_type 9 189 0 21 0 0 0 chr21 19323334 19323355 -25584215 + AT_rich Low_complexity Low_complexity 1 21 0 347 184 142 57 chr21 19323654 19323795 -25583775 + L2 LINE L2 2637 2789 -525 609 258 72 72 chr21 19323888 19324249 -25583321 + L2 LINE L2 2953 3313 0 305 155 42 14 chr21 19324500 19324571 -25582999 - L1MA5A LINE L1 -3 6294 6222 796 138 48 7 chr21 19324571 19324716 -25582854 - THE1B LTR MaLR -5 359 209 253 297 81 27 chr21 19325019 19325130 -25582440 + L2 LINE L2 3197 3313 0 34 55 0 0 chr21 19325440 19325495 -25582075 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr21 19325586 19325607 -25581963 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 19325893 19325943 -25581627 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr21 19325965 19325996 -25581574 + AT_rich Low_complexity Low_complexity 1 31 0 201 330 66 0 chr21 19326468 19326559 -25581011 + L2 LINE L2 2372 2468 -846 233 135 19 0 chr21 19328501 19328553 -25579017 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr21 19329317 19329339 -25578231 + AT_rich Low_complexity Low_complexity 1 22 0 3917 192 53 75 chr21 19329411 19330514 -25577056 - Tigger6a DNA MER2_type 0 1083 5 403 262 79 0 chr21 19331600 19331726 -25575844 - MIR SINE MIR -26 236 101 2214 131 38 14 chr21 19332416 19332782 -25574788 - THE1C LTR MaLR 0 375 1 304 292 153 14 chr21 19334968 19335112 -25572458 + MLT1I LTR MaLR 3 166 -243 246 305 66 13 chr21 19335158 19335309 -25572261 + MLT1I LTR MaLR 245 403 -6 265 330 121 11 chr21 19337541 19337632 -25569938 - L2 LINE L2 -31 3282 3182 245 307 34 11 chr21 19337700 19337788 -25569782 - L2 LINE L2 -366 2947 2858 1320 255 148 35 chr21 19337788 19338275 -25569295 + MLT1F LTR MaLR 1 542 0 317 321 114 16 chr21 19338654 19338838 -25568732 + L1ME LINE L1 5360 5561 -601 254 268 0 14 chr21 19338929 19339000 -25568570 + L1P3 LINE L1 5685 5754 -418 1448 158 0 16 chr21 19339176 19339430 -25568140 + AluJo SINE Alu 63 312 0 24 0 0 0 chr21 19339528 19339552 -25568018 + AT_rich Low_complexity Low_complexity 1 24 0 394 351 40 7 chr21 19340277 19340428 -25567142 - MIR SINE MIR -43 219 64 21 82 0 0 chr21 19340660 19340709 -25566861 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 19342428 19342449 -25565121 + AT_rich Low_complexity Low_complexity 1 21 0 351 70 0 0 chr21 19342492 19342549 -25565021 + L1MA1 LINE L1 6246 6302 0 1836 174 31 106 chr21 19343095 19343605 -25563965 - LTR42 LTR ERVL -23 472 1 221 306 81 23 chr21 19344386 19344559 -25563011 - L2 LINE L2 -1030 2284 2102 470 316 30 65 chr21 19344559 19344961 -25562609 - L2 LINE L2 -1651 1663 1276 1644 227 44 57 chr21 19346227 19346774 -25560796 + Charlie1a DNA MER1_type 50 589 -866 2277 88 17 0 chr21 19347932 19348227 -25559343 - AluSq SINE Alu -13 300 1 451 90 0 22 chr21 19349064 19349153 -25558417 + (TG)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr21 19349436 19349457 -25558113 + AT_rich Low_complexity Low_complexity 1 21 0 2339 75 3 7 chr21 19349681 19349987 -25557583 + AluY SINE Alu 3 307 -4 23 0 0 0 chr21 19350100 19350123 -25557447 + AT_rich Low_complexity Low_complexity 1 23 0 907 181 34 61 chr21 19350123 19350419 -25557151 - L1MA9 LINE L1 -25 6287 5904 * 1110 201 85 61 chr21 19350417 19350745 -25556825 + L1MA9 LINE L1 5553 5888 -424 232 309 8 40 chr21 19350831 19350957 -25556613 + L2 LINE L2 3117 3238 -75 186 309 72 31 chr21 19351525 19351622 -25555948 - L2 LINE L2 -229 3043 2943 314 302 0 17 chr21 19351712 19351828 -25555742 + CT-rich Low_complexity Low_complexity 1 114 0 2234 84 7 0 chr21 19353826 19354122 -25553448 - AluSg SINE Alu -12 298 1 445 337 43 17 chr21 19355570 19355976 -25551594 - MLT1H LTR MaLR -16 533 82 27 49 0 0 chr21 19356149 19356190 -25551380 + AT_rich Low_complexity Low_complexity 1 41 0 2041 80 3 27 chr21 19356220 19356520 -25551050 + AluY SINE Alu 3 295 -16 415 220 30 30 chr21 19356826 19356926 -25550644 - MIR SINE MIR -56 206 107 2213 81 0 7 chr21 19356955 19357250 -25550320 - AluSc SINE Alu -13 296 4 30 27 0 0 chr21 19357370 19357407 -25550163 + AT_rich Low_complexity Low_complexity 1 37 0 1299 227 22 22 chr21 19357974 19358295 -25549275 - MER63 DNA MER1_type 0 1060 740 448 120 82 4 chr21 19358466 19358741 -25548829 + (TA)n Simple_repeat Simple_repeat 1 296 0 240 130 43 0 chr21 19358753 19358822 -25548748 + (TA)n Simple_repeat Simple_repeat 1 72 0 198 0 0 0 chr21 19359343 19359365 -25548205 + (A)n Simple_repeat Simple_repeat 1 22 0 2452 158 38 14 chr21 19360427 19360932 -25546638 - L1MA4 LINE L1 -3 6297 5781 21 36 0 0 chr21 19360969 19360997 -25546573 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 19362123 19362152 -25545418 + AT_rich Low_complexity Low_complexity 1 29 0 268 198 111 12 chr21 19362363 19362444 -25545126 - L1MA9 LINE L1 -22 6290 6202 746 204 39 23 chr21 19362590 19362882 -25544688 - MLT1A1 LTR MaLR -15 350 1 26 30 0 0 chr21 19363240 19363273 -25544297 + AT_rich Low_complexity Low_complexity 1 33 0 1977 106 4 4 chr21 19364405 19364679 -25542891 - AluSp SINE Alu -39 274 1 1074 241 110 48 chr21 19365014 19365590 -25541980 - MLT1D LTR MaLR -4 501 3 228 267 103 34 chr21 19365889 19366035 -25541535 - L1ME3 LINE L1 -44 6118 5963 646 297 6 6 chr21 19366435 19366617 -25540953 - MLT1I LTR MaLR -159 250 69 2119 121 0 10 chr21 19367171 19367476 -25540094 - AluSg SINE Alu -8 302 1 1410 184 6 69 chr21 19367817 19368060 -25539510 - AluJo SINE Alu -12 300 80 2382 55 0 39 chr21 19368060 19368371 -25539199 + AluY SINE Alu 2 300 -11 1410 184 6 69 chr21 19368371 19368447 -25539123 - AluJo SINE Alu -232 80 1 985 312 49 18 chr21 19369097 19369482 -25538088 - MLT1I LTR MaLR -12 397 1 1823 145 0 21 chr21 19369571 19369861 -25537709 - AluSx SINE Alu -15 297 14 807 121 16 0 chr21 19370127 19370251 -25537319 - AluSq/x SINE Alu -187 126 1 1871 97 86 0 chr21 19370603 19370871 -25536699 + AluSp SINE Alu 1 291 -22 1090 233 145 44 chr21 19372064 19372524 -25535046 + MLT1D LTR MaLR 1 390 0 24 0 0 0 chr21 19372813 19372837 -25534733 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr21 19373617 19373656 -25533914 + AT_rich Low_complexity Low_complexity 1 39 0 1380 227 49 94 chr21 19374383 19375067 -25532503 - L1MC5 LINE L1 -697 7658 6997 2438 74 0 3 chr21 19375473 19375785 -25531785 - AluY SINE Alu 0 311 1 341 309 18 36 chr21 19376148 19376423 -25531147 - L1MC5 LINE L1 -2166 6036 5767 2110 122 10 3 chr21 19377174 19377470 -25530100 + AluSc SINE Alu 1 298 -11 431 288 68 17 chr21 19377499 19377735 -25529835 + L1M4 LINE L1 4386 4633 -1513 22 0 0 0 chr21 19379295 19379317 -25528253 + AT_rich Low_complexity Low_complexity 1 22 0 251 103 52 69 chr21 19379550 19379608 -25527962 - MLT2B1 LTR ERVL 0 520 464 231 36 0 0 chr21 19379653 19379681 -25527889 + (TA)n Simple_repeat Simple_repeat 2 29 0 477 183 0 0 chr21 19380521 19380603 -25526967 - AluJ/FRAM SINE Alu -17 295 214 384 247 20 20 chr21 19380692 19380919 -25526651 + (TA)n Simple_repeat Simple_repeat 1 227 0 1438 199 34 43 chr21 19381045 19381372 -25526198 - MLT2B1 LTR ERVL -196 324 1 2670 268 88 32 chr21 19382130 19382505 -25525065 - L1MC5 LINE L1 -1298 5242 4890 5032 69 3 1 chr21 19382505 19383172 -25524398 - L1PA8 LINE L1 0 6172 5505 2670 268 88 32 chr21 19383172 19384164 -25523406 - L1MC5 LINE L1 -1650 4890 3798 22 0 0 0 chr21 19384174 19384196 -25523374 + AT_rich Low_complexity Low_complexity 1 22 0 772 289 73 33 chr21 19384232 19384381 -25523189 - L1MC5 LINE L1 -3292 3248 3106 614 65 76 11 chr21 19384381 19384473 -25523097 - L1PA4 LINE L1 -4 6151 6054 772 289 73 33 chr21 19384473 19384898 -25522672 - L1MC5 LINE L1 -3434 3106 2651 571 295 133 34 chr21 19384897 19385402 -25522168 - L1MC5 LINE L1 -4704 1836 1282 * 507 342 102 3 chr21 19385907 19386229 -25521341 - L1MC5 LINE L1 -5963 758 405 204 300 146 45 chr21 19386317 19386427 -25521143 + L2 LINE L2 2932 3052 -220 692 303 53 26 chr21 19387228 19387795 -25519775 + L1MC5 LINE L1 7349 7930 -31 383 38 19 0 chr21 19389672 19389725 -25517845 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 330 298 88 0 chr21 19391075 19391189 -25516381 + MIR SINE MIR 20 143 -119 5900 155 49 22 chr21 19391395 19391437 -25516133 + Tigger3b DNA MER2_type 36 75 -2953 2000 105 20 30 chr21 19391437 19391732 -25515838 + AluSc SINE Alu 1 292 -17 5900 155 49 22 chr21 19391732 19392851 -25514719 + Tigger3b DNA MER2_type 75 1228 -3 219 232 18 18 chr21 19392874 19392930 -25514640 + (TG)n Simple_repeat Simple_repeat 1 56 0 23 68 0 0 chr21 19393400 19393444 -25514126 + AT_rich Low_complexity Low_complexity 1 44 0 233 106 0 21 chr21 19394429 19394476 -25513094 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 195 42 0 0 chr21 19394668 19394692 -25512878 + (TG)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr21 19394691 19394712 -25512858 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 431 352 38 14 chr21 19396784 19396997 -25510573 - MIR SINE MIR -24 238 21 328 338 83 14 chr21 19397836 19397981 -25509589 - L2 LINE L2 0 3313 3159 244 310 103 0 chr21 19398037 19398124 -25509446 - MIR SINE MIR -1 261 166 1416 257 47 80 chr21 19398139 19398730 -25508840 - MER77 LTR ERV1 -12 593 22 27 62 0 0 chr21 19398805 19398853 -25508717 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr21 19399305 19399326 -25508244 + AT_rich Low_complexity Low_complexity 1 21 0 2323 70 0 0 chr21 19399326 19399612 -25507958 - AluSg SINE Alu -24 286 1 22 35 0 0 chr21 19400492 19400521 -25507049 + AT_rich Low_complexity Low_complexity 1 29 0 6701 224 43 32 chr21 19400521 19402773 -25504797 + L1MC1 LINE L1 3057 5371 -962 1777 147 7 33 chr21 19402773 19403080 -25504490 + AluJb SINE Alu 1 299 -13 6701 224 43 32 chr21 19403080 19404049 -25503521 + L1MC1 LINE L1 5371 6327 -6 420 302 69 29 chr21 19404417 19404662 -25502908 - MIR SINE MIR -6 256 2 21 57 0 0 chr21 19405998 19406033 -25501537 + AT_rich Low_complexity Low_complexity 1 35 0 2086 97 14 10 chr21 19407039 19407329 -25500241 - AluSq SINE Alu -22 291 1 690 199 31 42 chr21 19407391 19407582 -25499988 + MER53 DNA DNA 1 189 0 23 33 0 0 chr21 19407694 19407724 -25499846 + AT_rich Low_complexity Low_complexity 1 30 0 379 333 140 31 chr21 19407724 19408081 -25499489 - L2 LINE L2 -11 3302 2907 457 304 78 106 chr21 19408117 19408359 -25499211 - L2 LINE L2 -499 2815 2591 2169 109 0 3 chr21 19408359 19408662 -25498908 + AluSc SINE Alu 1 302 -7 457 304 78 106 chr21 19408662 19408892 -25498678 - L2 LINE L2 -723 2591 2356 22 0 0 0 chr21 19409828 19409850 -25497720 + AT_rich Low_complexity Low_complexity 1 22 0 248 253 0 11 chr21 19410803 19410890 -25496680 + C-rich Low_complexity Low_complexity 1 86 0 195 129 0 0 chr21 19410894 19410925 -25496645 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr21 19411078 19411114 -25496456 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr21 19411543 19411565 -25496005 + AT_rich Low_complexity Low_complexity 1 22 0 37 39 0 0 chr21 19411863 19411914 -25495656 + AT_rich Low_complexity Low_complexity 1 51 0 325 250 11 0 chr21 19412954 19413046 -25494524 - MLT1G1 LTR MaLR 0 555 463 466 289 44 36 chr21 19413107 19413332 -25494238 - MLT1G1 LTR MaLR -206 389 163 243 128 21 0 chr21 19413358 19413405 -25494165 - L1MA4A LINE L1 -7 6296 6249 * 739 185 56 0 chr21 19413400 19413562 -25494008 - L1 LINE L1 -794 5352 5182 21 36 0 0 chr21 19413643 19413671 -25493899 + AT_rich Low_complexity Low_complexity 1 28 0 597 286 99 89 chr21 19414696 19415018 -25492552 + L2 LINE L2 2894 3222 -91 899 128 0 8 chr21 19415018 19415151 -25492419 + FLAM_C SINE Alu 2 133 0 597 286 99 89 chr21 19415151 19415244 -25492326 + L2 LINE L2 3222 3313 0 23 54 0 0 chr21 19415274 19415311 -25492259 + AT_rich Low_complexity Low_complexity 1 37 0 690 365 4 8 chr21 19416191 19416446 -25491124 - MIR SINE MIR -3 259 6 242 289 41 41 chr21 19416628 19416725 -25490845 + L2 LINE L2 3208 3304 -9 22 0 0 0 chr21 19417409 19417431 -25490139 + AT_rich Low_complexity Low_complexity 1 22 0 472 232 45 45 chr21 19417536 19417713 -25489857 - MER5B DNA MER1_type 0 178 2 747 309 124 27 chr21 19418678 19419193 -25488377 + L1ME3A LINE L1 5558 6122 -48 25 0 0 0 chr21 19419546 19419571 -25487999 + AT_rich Low_complexity Low_complexity 1 25 0 2050 98 22 0 chr21 19420055 19420359 -25487211 + AluSx SINE Alu 1 310 0 216 0 0 0 chr21 19420548 19420572 -25486998 + (CAA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr21 19421959 19421982 -25485588 + AT_rich Low_complexity Low_complexity 1 23 0 208 371 14 0 chr21 19422155 19422225 -25485345 - MIR3 SINE MIR -9 199 129 30 0 0 0 chr21 19422383 19422413 -25485157 + AT_rich Low_complexity Low_complexity 1 30 0 751 176 0 22 chr21 19422551 19422687 -25484883 + FLAM_C SINE Alu 1 133 0 714 276 6 11 chr21 19423779 19423953 -25483617 + MIR SINE MIR 22 194 -68 26 30 0 0 chr21 19424520 19424553 -25483017 + AT_rich Low_complexity Low_complexity 1 33 0 375 299 0 56 chr21 19424814 19424958 -25482612 - L2 LINE L2 0 3313 3178 462 353 93 11 chr21 19424990 19425047 -25482523 - L2 LINE L2 -1121 2193 2142 2091 123 7 3 chr21 19425047 19425357 -25482213 + AluSq SINE Alu 1 311 -2 462 353 93 11 chr21 19425357 19425750 -25481820 - L2 LINE L2 -1172 2142 1706 26 50 0 0 chr21 19426361 19426401 -25481169 + AT_rich Low_complexity Low_complexity 1 40 0 2435 81 0 0 chr21 19426594 19426901 -25480669 - AluSc SINE Alu -2 307 1 195 318 0 0 chr21 19427471 19427534 -25480036 - MIR SINE MIR -15 247 185 23 33 0 0 chr21 19427785 19427815 -25479755 + AT_rich Low_complexity Low_complexity 1 30 0 829 197 22 45 chr21 19427815 19428127 -25479443 - L1MA9 LINE L1 -21 6291 5891 1070 278 56 28 chr21 19429227 19429587 -25477983 + LTR16A LTR ERVL 2 371 -79 1849 194 23 59 chr21 19429862 19430232 -25477338 + MSTA LTR MaLR 6 359 -69 2197 118 0 0 chr21 19430232 19430537 -25477033 - AluSx SINE Alu -7 305 1 1849 194 23 59 chr21 19430537 19430604 -25476966 + MSTA LTR MaLR 359 427 -1 235 260 111 99 chr21 19431005 19431186 -25476384 + MIR SINE MIR 24 206 -56 22 35 0 0 chr21 19431190 19431219 -25476351 + AT_rich Low_complexity Low_complexity 1 29 0 408 40 0 0 chr21 19431287 19431337 -25476233 + (TG)n Simple_repeat Simple_repeat 2 51 0 268 302 54 16 chr21 19432076 19432205 -25475365 - MER94 DNA DNA 0 134 1 180 0 0 0 chr21 19433859 19433879 -25473691 + (T)n Simple_repeat Simple_repeat 1 20 0 533 287 33 6 chr21 19434902 19435083 -25472487 + MER5A DNA MER1_type 1 186 -3 864 238 34 72 chr21 19435195 19435460 -25472110 + MIR SINE MIR 3 257 -5 2284 101 3 0 chr21 19435516 19435823 -25471747 - AluSp SINE Alu -5 308 1 225 232 172 10 chr21 19436183 19436282 -25471288 + Charlie4 DNA MER1_type 1829 1943 -18 208 352 11 0 chr21 19436678 19436766 -25470804 + L2 LINE L2 3225 3313 0 28 0 0 0 chr21 19437388 19437416 -25470154 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 0 0 chr21 19438137 19438187 -25469383 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr21 19438287 19438309 -25469261 + AT_rich Low_complexity Low_complexity 1 22 0 1701 227 8 3 chr21 19438792 19439153 -25468417 - MLT1A1 LTR MaLR -2 363 1 181 281 0 53 chr21 19439195 19439252 -25468318 + L2 LINE L2 3218 3271 -1 22 35 0 0 chr21 19441953 19441982 -25465588 + AT_rich Low_complexity Low_complexity 1 29 0 1135 188 110 31 chr21 19442348 19442603 -25464967 - AluJo SINE Alu -37 275 1 504 0 0 0 chr21 19444075 19444131 -25463439 + (CA)n Simple_repeat Simple_repeat 2 57 0 213 44 22 44 chr21 19444703 19444748 -25462822 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 182 261 58 14 chr21 19444939 19445008 -25462562 + L2 LINE L2 3145 3216 -56 3250 229 32 24 chr21 19445013 19445846 -25461724 + L1MD2 LINE L1 5493 6332 -27 2263 91 7 0 chr21 19445850 19446147 -25461423 - AluY SINE Alu -12 299 1 192 97 0 0 chr21 19446191 19446222 -25461348 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 236 120 20 0 chr21 19447809 19447859 -25459711 - LTR66 LTR ERVL -163 447 397 235 214 60 12 chr21 19447867 19447951 -25459619 + L1MC4 LINE L1 6614 6701 -1341 1736 134 3 35 chr21 19448565 19448855 -25458715 + AluSx SINE Alu 21 301 -11 204 231 0 0 chr21 19448865 19448917 -25458653 + (TG)n Simple_repeat Simple_repeat 2 53 0 262 240 68 103 chr21 19449232 19449378 -25458192 - L2 LINE L2 -10 3303 3163 1005 247 103 112 chr21 19450634 19451257 -25456313 + MLT1E3 LTR MaLR 1 617 -7 919 192 238 72 chr21 19451522 19451870 -25455700 + MLT1D LTR MaLR 1 290 -215 1904 123 8 0 chr21 19451870 19452138 -25455432 + AluSx SINE Alu 1 270 -42 919 192 238 72 chr21 19452138 19452161 -25455409 + MLT1D LTR MaLR 290 308 -197 1527 96 59 14 chr21 19452161 19452381 -25455189 - MER30 DNA MER1_type 0 230 1 919 192 238 72 chr21 19452381 19452441 -25455129 + MLT1D LTR MaLR 308 505 0 6356 172 32 6 chr21 19452499 19453690 -25453880 + Tigger3b DNA MER2_type 10 1231 0 240 192 315 0 chr21 19453861 19453934 -25453636 - MER5A DNA MER1_type -83 106 11 11497 166 20 17 chr21 19453972 19456136 -25451434 + Tigger1 DNA MER2_type 2 2173 -245 21 0 0 0 chr21 19456329 19456350 -25451220 + AT_rich Low_complexity Low_complexity 1 21 0 2993 80 40 0 chr21 19458103 19458530 -25449040 + L1PA10 LINE L1 5724 6167 -1 31 58 0 0 chr21 19458731 19458783 -25448787 + AT_rich Low_complexity Low_complexity 1 52 0 2598 169 43 0 chr21 19458952 19459437 -25448133 + L1PA16 LINE L1 5661 6166 0 372 293 76 36 chr21 19459947 19460340 -25447230 + L1MB8 LINE L1 3816 4224 -1922 21 0 0 0 chr21 19460615 19460636 -25446934 + AT_rich Low_complexity Low_complexity 1 21 0 404 335 129 37 chr21 19460843 19461276 -25446294 + L1MB8 LINE L1 4903 5375 -771 300 357 32 6 chr21 19461532 19461689 -25445881 + L1MB8 LINE L1 5717 5877 -301 26 50 0 0 chr21 19462276 19462316 -25445254 + AT_rich Low_complexity Low_complexity 1 40 0 324 322 131 19 chr21 19462548 19462762 -25444808 - MIR SINE MIR -2 260 23 288 271 93 14 chr21 19463070 19463210 -25444360 - MIR SINE MIR -30 232 82 31 0 0 0 chr21 19463293 19463324 -25444246 + AT_rich Low_complexity Low_complexity 1 31 0 270 0 0 0 chr21 19469865 19469895 -25437675 + (TG)n Simple_repeat Simple_repeat 1 30 0 2291 95 0 3 chr21 19471055 19471361 -25436209 - AluSx SINE Alu -3 309 5 38 0 0 0 chr21 19471675 19471713 -25435857 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr21 19472338 19472360 -25435210 + AT_rich Low_complexity Low_complexity 1 22 0 216 213 0 0 chr21 19473054 19473115 -25434455 + CT-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr21 19473449 19473470 -25434100 + AT_rich Low_complexity Low_complexity 1 21 0 223 355 132 8 chr21 19473620 19473741 -25433829 + MIR SINE MIR 6 142 -66 22 0 0 0 chr21 19473758 19473780 -25433790 + AT_rich Low_complexity Low_complexity 1 22 0 503 205 103 19 chr21 19473891 19474047 -25433523 + MIR SINE MIR 85 253 -9 2685 174 50 18 chr21 19475321 19475936 -25431634 - L1MA7 LINE L1 -6 6285 5651 23 0 0 0 chr21 19476144 19476167 -25431403 + AT_rich Low_complexity Low_complexity 1 23 0 326 289 79 40 chr21 19477029 19477181 -25430389 + MER5B DNA MER1_type 21 178 0 2299 91 0 0 chr21 19477675 19477973 -25429597 + AluSc SINE Alu 1 298 -11 222 237 46 40 chr21 19478886 19479038 -25428532 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 935 220 117 22 chr21 19479038 19479510 -25428060 + MLT1F1 LTR MaLR 6 559 -8 2392 47 0 0 chr21 19480151 19480430 -25427140 + AluY SINE Alu 6 284 -27 273 269 15 0 chr21 19480972 19481039 -25426531 + CT-rich Low_complexity Low_complexity 1 68 0 193 321 0 0 chr21 19481260 19481316 -25426254 - MIR SINE MIR -111 151 96 2358 68 0 3 chr21 19481623 19481915 -25425655 + AluY SINE Alu 21 311 0 182 91 30 0 chr21 19482183 19482216 -25425354 + (TAA)n Simple_repeat Simple_repeat 1 34 0 506 260 60 0 chr21 19482344 19482494 -25425076 - MER105 DNA DNA -45 159 1 229 235 110 59 chr21 19482607 19482743 -25424827 + MER104 DNA Tc2 26 168 -12 186 43 0 0 chr21 19482780 19482803 -25424767 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 198 71 0 0 chr21 19484259 19484287 -25423283 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 3781 83 88 0 chr21 19484287 19484830 -25422740 - L1PA8 LINE L1 -24 6148 5558 2079 104 13 0 chr21 19484829 19485147 -25422423 - L1PA8A LINE L1 -810 5336 5015 * 1632 100 4 0 chr21 19485144 19485374 -25422196 + L1PA8A LINE L1 5327 5557 -574 * 252 198 83 0 chr21 19485452 19485573 -25421997 + (TATAA)n Simple_repeat Simple_repeat 1 131 0 1768 185 28 11 chr21 19486447 19486803 -25420767 + MLT1A1 LTR MaLR 4 365 0 356 375 60 14 chr21 19487271 19487487 -25420083 - MIR SINE MIR -24 238 13 392 158 0 12 chr21 19488007 19488089 -25419481 + (TG)n Simple_repeat Simple_repeat 2 82 0 208 242 73 73 chr21 19488677 19488801 -25418769 + L2 LINE L2 3111 3234 -79 2123 98 0 11 chr21 19489181 19489496 -25418074 + AluSq SINE Alu 1 312 0 1858 138 44 0 chr21 19490693 19490989 -25416581 - AluSg SINE Alu -1 309 1 464 360 78 44 chr21 19491382 19491968 -25415602 + L1M2 LINE L1 3 608 -6241 297 304 0 0 chr21 19492662 19492754 -25414816 + L1PA16 LINE L1 1473 1564 -5285 463 306 4 28 chr21 19492774 19493022 -25414548 + L1PA16 LINE L1 1371 1612 -5238 423 0 0 0 chr21 19493028 19493075 -25414495 + (CA)n Simple_repeat Simple_repeat 2 48 0 9520 241 60 19 chr21 19493079 19495820 -25411750 + L1PA16 LINE L1 1948 4575 -2294 2067 130 67 14 chr21 19495820 19496166 -25411404 - THE1B LTR MaLR 0 364 1 9520 241 60 19 chr21 19496166 19496373 -25411197 + L1PA16 LINE L1 4575 4772 -2097 189 0 0 0 chr21 19496373 19496394 -25411176 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 9520 241 60 19 chr21 19496394 19497749 -25409821 + L1PA16 LINE L1 4772 6491 -378 279 133 0 0 chr21 19497775 19497820 -25409750 + (CA)n Simple_repeat Simple_repeat 2 46 0 314 133 24 24 chr21 19497851 19497934 -25409636 + (TA)n Simple_repeat Simple_repeat 2 84 0 304 232 0 32 chr21 19497996 19498091 -25409479 - L1MC4 LINE L1 -1339 6703 6612 602 168 21 7 chr21 19498091 19498234 -25409336 + (TA)n Simple_repeat Simple_repeat 1 145 0 310 250 11 22 chr21 19498234 19498326 -25409244 - L1MC4 LINE L1 -1340 6702 6612 275 271 47 0 chr21 19498345 19498430 -25409140 + L1MC4 LINE L1 6614 6702 -1340 * 288 250 48 0 chr21 19498356 19498440 -25409130 - L1MC4 LINE L1 -1340 6702 6615 551 157 41 7 chr21 19498440 19498587 -25408983 + (TA)n Simple_repeat Simple_repeat 2 153 0 245 286 12 0 chr21 19498588 19498672 -25408898 + L1MC4 LINE L1 6614 6698 -1344 * 1743 176 55 25 chr21 19498653 19499017 -25408553 + L1PA16 LINE L1 6479 6853 -16 180 373 63 21 chr21 19499399 19499541 -25408029 - L2 LINE L2 -6 3266 3119 3602 43 2 0 chr21 19499541 19499985 -25407585 + L1PA5 LINE L1 5703 6147 -7 939 133 1 10 chr21 19500006 19500158 -25407412 - L1PA13 LINE L1 -22 6150 6002 208 288 176 20 chr21 19500843 19500996 -25406574 - MIR SINE MIR -10 252 76 297 357 64 7 chr21 19504341 19504481 -25403089 - L2 LINE L2 0 3272 3125 1682 55 0 9 chr21 19504949 19505167 -25402403 + L1PA5 LINE L1 5939 6154 0 240 367 11 0 chr21 19505371 19505461 -25402109 - MER5A DNA MER1_type -98 91 1 * 292 333 11 11 chr21 19505461 19505544 -25402026 + MER5A DNA MER1_type 41 123 -66 333 155 0 0 chr21 19505584 19505642 -25401928 + (CA)n Simple_repeat Simple_repeat 2 59 0 461 67 0 40 chr21 19506043 19506118 -25401452 + (CA)n Simple_repeat Simple_repeat 1 72 0 396 259 35 94 chr21 19506201 19506371 -25401199 + MIR SINE MIR 36 195 -67 214 171 29 43 chr21 19506846 19506916 -25400654 + T-rich Low_complexity Low_complexity 4 72 0 2182 90 7 3 chr21 19506992 19507291 -25400279 + AluSp SINE Alu 1 300 -13 26 0 0 0 chr21 19507466 19507492 -25400078 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr21 19508087 19508131 -25399439 + AT_rich Low_complexity Low_complexity 1 44 0 2571 55 0 0 chr21 19508269 19508578 -25398992 + AluY SINE Alu 3 311 0 31 0 0 0 chr21 19508581 19508612 -25398958 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr21 19509882 19509917 -25397653 + AT_rich Low_complexity Low_complexity 1 35 0 31 58 0 0 chr21 19510023 19510075 -25397495 + AT_rich Low_complexity Low_complexity 1 52 0 591 347 57 19 chr21 19511901 19512426 -25395144 - L1MEd LINE L1 -5209 910 366 2091 91 11 0 chr21 19512463 19512748 -25394822 - AluSq SINE Alu -8 305 18 186 43 0 0 chr21 19513275 19513298 -25394272 + (TG)n Simple_repeat Simple_repeat 2 24 0 1970 126 3 31 chr21 19513881 19514199 -25393371 - AluSx SINE Alu -3 309 1 23 68 0 0 chr21 19514247 19514291 -25393279 + AT_rich Low_complexity Low_complexity 1 44 0 30 77 0 0 chr21 19514961 19515026 -25392544 + AT_rich Low_complexity Low_complexity 1 65 0 28 0 0 0 chr21 19517708 19517736 -25389834 + AT_rich Low_complexity Low_complexity 1 28 0 596 222 84 49 chr21 19518095 19518298 -25389272 + MIR SINE MIR 15 224 -38 213 39 0 0 chr21 19518775 19518801 -25388769 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 191 260 48 96 chr21 19518858 19519004 -25388566 - L2 LINE L2 -129 3184 3046 552 297 99 17 chr21 19519025 19519257 -25388313 - L2 LINE L2 -371 2943 2693 258 246 83 154 chr21 19519667 19519907 -25387663 + MER58A DNA MER1_type 2 224 0 1381 221 62 9 chr21 19521070 19521395 -25386175 + MER2 DNA MER2_type 2 343 -1 26 30 0 0 chr21 19521617 19521650 -25385920 + AT_rich Low_complexity Low_complexity 1 33 0 206 341 98 24 chr21 19522327 19522450 -25385120 - L2 LINE L2 -4 3268 3137 295 298 40 40 chr21 19522605 19522729 -25384841 - L2 LINE L2 -279 2993 2870 198 381 55 48 chr21 19522795 19523105 -25384465 - L2 LINE L2 -460 2854 2543 26 0 0 0 chr21 19523411 19523437 -25384133 + AT_rich Low_complexity Low_complexity 1 26 0 217 250 0 16 chr21 19523849 19523913 -25383657 + L2 LINE L2 2205 2267 -1047 470 284 92 5 chr21 19523917 19524135 -25383435 - MLT1J1 LTR MaLR -8 438 202 180 0 0 0 chr21 19524588 19524608 -25382962 + (CA)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr21 19525024 19525065 -25382505 + AT_rich Low_complexity Low_complexity 1 41 0 551 104 0 0 chr21 19525235 19525312 -25382258 + MADE1 DNA Mariner 4 80 0 349 362 29 43 chr21 19526663 19526939 -25380631 + MLT1I LTR MaLR 99 370 -39 192 40 0 0 chr21 19526994 19527019 -25380551 + (TC)n Simple_repeat Simple_repeat 2 26 0 206 358 73 18 chr21 19527205 19527314 -25380256 - L2 LINE L2 -4 3268 3154 454 0 16 32 chr21 19529738 19529801 -25377769 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 282 160 0 0 chr21 19530721 19530771 -25376799 + CT-rich Low_complexity Low_complexity 4 53 0 1259 193 70 30 chr21 19530963 19531294 -25376276 + MER2 DNA MER2_type 1 344 0 1273 253 3 6 chr21 19532182 19532530 -25375040 - L1P LINE L1 -783 5363 5017 3265 5 0 0 chr21 19532543 19532911 -25374659 - L1PA2 LINE L1 0 6155 5788 4293 10 0 0 chr21 19532911 19533401 -25374169 + L1PA2 LINE L1 5283 5772 -383 1060 202 57 19 chr21 19533399 19533661 -25373909 - L1 LINE L1 -1118 5028 4757 * 4013 159 66 1 chr21 19533660 19534389 -25373181 + L1PA16 LINE L1 5391 6166 0 2156 241 82 59 chr21 19534497 19536194 -25371376 - L1ME1 LINE L1 -230 6005 4260 2064 127 0 0 chr21 19536194 19536511 -25371059 + AluSx SINE Alu 1 317 0 2156 241 82 59 chr21 19536511 19536782 -25370788 - L1ME1 LINE L1 -1975 4260 3997 2672 248 99 11 chr21 19536786 19537712 -25369858 - L1ME1 LINE L1 -2878 3337 2315 2857 116 19 9 chr21 19537712 19538177 -25369393 - L1MA1 LINE L1 0 6302 5833 2672 248 99 11 chr21 19538177 19538447 -25369123 - L1ME1 LINE L1 -3900 2315 2070 255 250 232 0 chr21 19538457 19538569 -25369001 - L1ME1 LINE L1 -4367 2029 1892 1628 246 52 74 chr21 19538569 19539204 -25368366 - MLT1E2 LTR MaLR -5 621 1 249 108 0 0 chr21 19539218 19539255 -25368315 + (CA)n Simple_repeat Simple_repeat 1 37 0 3011 275 50 72 chr21 19539316 19541177 -25366393 - L1ME1 LINE L1 -4555 1841 23 30 27 0 0 chr21 19541349 19541386 -25366184 + AT_rich Low_complexity Low_complexity 1 37 0 624 291 27 9 chr21 19541846 19542066 -25365504 - L1ME1 LINE L1 -23 6143 5920 351 176 40 14 chr21 19542093 19542167 -25365403 + Tigger1 DNA MER2_type 1264 1339 -1079 272 285 65 23 chr21 19542168 19542382 -25365188 - L1MDb LINE L1 -1413 4993 4771 2355 75 0 3 chr21 19542494 19542799 -25364771 - AluY SINE Alu -7 304 1 853 288 57 48 chr21 19542799 19543472 -25364098 - L1MDb LINE L1 -1626 4780 4102 200 173 39 0 chr21 19543480 19543532 -25364038 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 22 0 0 0 chr21 19543625 19543647 -25363923 + AT_rich Low_complexity Low_complexity 1 22 0 967 271 60 40 chr21 19543740 19544457 -25363113 - L1MDb LINE L1 -2346 4060 3330 1255 266 127 41 chr21 19544470 19545918 -25361652 - L1MDb LINE L1 -3613 2793 1157 180 0 0 0 chr21 19545918 19545938 -25361632 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1255 266 127 41 chr21 19545938 19546295 -25361275 - L1MDb LINE L1 -5249 1157 832 847 29 0 0 chr21 19547430 19547532 -25360038 - L1PA5 LINE L1 -4 6150 6049 2214 104 0 25 chr21 19547684 19548002 -25359568 - AluSx SINE Alu -2 310 1 1108 255 32 52 chr21 19548058 19548524 -25359046 + LTR55 LTR ERV 74 530 -18 23 86 0 0 chr21 19548651 19548709 -25358861 + AT_rich Low_complexity Low_complexity 1 58 0 1438 201 29 7 chr21 19548709 19548988 -25358582 - AluJb SINE Alu -22 290 6 310 260 0 0 chr21 19549060 19549137 -25358433 - Charlie1 DNA MER1_type -278 2483 2407 237 171 0 0 chr21 19549219 19549260 -25358310 - Charlie1 DNA MER1_type -374 2387 2347 24 0 0 0 chr21 19549433 19549457 -25358113 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr21 19549665 19549710 -25357860 + AT_rich Low_complexity Low_complexity 1 45 0 739 139 0 23 chr21 19550171 19550300 -25357270 + FRAM SINE Alu 46 171 -5 242 281 31 0 chr21 19550308 19550372 -25357198 - MER2 DNA MER2_type 0 345 280 2104 112 11 0 chr21 19550525 19550812 -25356758 + AluSg SINE Alu 7 296 -14 2261 194 23 5 chr21 19552305 19552883 -25354687 - L1P LINE L1 -743 5403 4833 4079 144 40 19 chr21 19552887 19553611 -25353959 + L1PA16 LINE L1 5407 6145 -21 533 77 13 0 chr21 19555281 19555359 -25352211 + L1PA5 LINE L1 6073 6151 -3 25 90 0 0 chr21 19556189 19556256 -25351314 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr21 19557822 19557843 -25349727 + AT_rich Low_complexity Low_complexity 1 21 0 303 227 0 0 chr21 19558163 19558229 -25349341 - MLT1B LTR MaLR 0 390 325 482 137 0 0 chr21 19558230 19558303 -25349267 - AluSc SINE Alu -228 81 9 1271 85 0 0 chr21 19558322 19558486 -25349084 + AluSc SINE Alu 140 303 -6 271 232 14 29 chr21 19558486 19558555 -25349015 - MLT1B LTR MaLR -64 403 336 258 45 296 0 chr21 19558639 19558683 -25348887 - L1PA16 LINE L1 -9 6157 6101 * 338 247 41 21 chr21 19558682 19558779 -25348791 + L1MB8 LINE L1 5946 6044 -134 610 196 65 46 chr21 19558827 19558980 -25348590 - MLT1B LTR MaLR -234 156 1 25 31 0 0 chr21 19559167 19559199 -25348371 + AT_rich Low_complexity Low_complexity 1 32 0 1680 275 73 32 chr21 19559207 19559231 -25348339 - L1MEc LINE L1 -2338 3877 3855 5649 151 76 26 chr21 19559231 19560110 -25347460 + Tigger3b DNA MER2_type 1 955 -2073 2073 110 28 0 chr21 19560110 19560401 -25347169 - AluSx SINE Alu -12 300 2 5649 151 76 26 chr21 19560401 19560693 -25346877 + Tigger3b DNA MER2_type 955 1231 0 1680 275 73 32 chr21 19560693 19561690 -25345880 - L1MEc LINE L1 -2360 3855 2814 322 230 10 0 chr21 19561803 19561903 -25345667 - L1MEc LINE L1 -3603 2612 2512 521 260 81 12 chr21 19562039 19562297 -25345273 - L1MEc LINE L1 -5263 1133 858 1347 215 31 3 chr21 19562303 19562591 -25344979 - AluJb SINE Alu -14 298 3 352 65 0 32 chr21 19562673 19562735 -25344835 + (TA)n Simple_repeat Simple_repeat 1 60 0 1726 143 14 7 chr21 19562762 19563042 -25344528 - AluSx SINE Alu -30 282 1 1948 136 0 23 chr21 19563054 19563363 -25344207 - AluSg SINE Alu -8 302 1 1516 290 32 19 chr21 19563366 19563959 -25343611 - L1MEc LINE L1 -5580 816 216 1605 127 104 15 chr21 19565120 19565388 -25342182 - AluSx SINE Alu -20 292 1 26 74 0 0 chr21 19565611 19565665 -25341905 + AT_rich Low_complexity Low_complexity 1 54 0 257 171 0 0 chr21 19565906 19565947 -25341623 - MER112 DNA MER1_type -215 45 5 24 0 0 0 chr21 19566276 19566300 -25341270 + AT_rich Low_complexity Low_complexity 1 24 0 1316 47 23 0 chr21 19567556 19567728 -25339842 + L1PA4 LINE L1 5978 6153 -2 21 36 0 0 chr21 19567927 19567955 -25339615 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 19568836 19568865 -25338705 + AT_rich Low_complexity Low_complexity 1 29 0 269 329 0 0 chr21 19569105 19569181 -25338389 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 415 237 0 0 chr21 19570246 19570322 -25337248 + MER58A DNA MER1_type 1 76 -31 233 274 48 16 chr21 19571901 19571963 -25335607 + MIR SINE MIR 13 76 -186 347 367 38 13 chr21 19572408 19572566 -25335004 - MER5A DNA MER1_type -24 165 4 868 273 56 90 chr21 19573372 19573959 -25333611 - MLT1G1 LTR MaLR -13 582 16 551 281 18 12 chr21 19573969 19574136 -25333434 - MIR SINE MIR -73 189 22 12042 186 83 16 chr21 19574425 19574509 -25333061 + L1MA1 LINE L1 15 92 -7473 366 23 0 0 chr21 19574509 19574552 -25333018 + (CA)n Simple_repeat Simple_repeat 2 44 0 12042 186 83 16 chr21 19574552 19576975 -25330595 + L1MA1 LINE L1 92 2691 -4874 322 68 0 0 chr21 19577019 19577063 -25330507 + L1MA1 LINE L1 2672 2715 -4850 13622 154 40 40 chr21 19577063 19581372 -25326198 + L1MA1 LINE L1 3413 7721 0 27 0 0 0 chr21 19581372 19581399 -25326171 + AT_rich Low_complexity Low_complexity 1 27 0 2122 62 9 100 chr21 19581962 19582303 -25325267 + AluY SINE Alu 1 310 -1 21 71 0 0 chr21 19582707 19582749 -25324821 + AT_rich Low_complexity Low_complexity 1 42 0 239 0 0 31 chr21 19582890 19582922 -25324648 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1663 145 0 15 chr21 19582922 19583186 -25324384 - AluSx SINE Alu -32 280 21 1360 172 6 114 chr21 19583226 19583435 -25324135 - AluJb SINE Alu -5 297 136 180 0 0 0 chr21 19583435 19583455 -25324115 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1360 172 6 114 chr21 19583455 19583577 -25323993 - AluJb SINE Alu -166 136 2 323 262 83 35 chr21 19583695 19583840 -25323730 + MIR SINE MIR 54 205 -57 306 129 14 14 chr21 19583901 19583971 -25323599 + L1PA6 LINE L1 6080 6149 -5 22 0 0 0 chr21 19583977 19583999 -25323571 + AT_rich Low_complexity Low_complexity 1 22 0 1494 118 0 35 chr21 19584006 19584234 -25323336 - AluSg/x SINE Alu -8 304 85 1688 137 0 99 chr21 19586310 19586653 -25320917 + AluSx SINE Alu 3 311 -1 404 135 14 0 chr21 19586664 19586738 -25320832 + GA-rich Low_complexity Low_complexity 4 78 0 1988 101 25 0 chr21 19586760 19587065 -25320505 - AluSx SINE Alu 0 312 1 27 0 0 0 chr21 19587520 19587547 -25320023 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 19587688 19587711 -25319859 + AT_rich Low_complexity Low_complexity 1 23 0 2064 93 7 0 chr21 19587866 19588144 -25319426 + AluSp SINE Alu 2 281 -32 351 0 0 0 chr21 19588144 19588183 -25319387 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 24 53 0 0 chr21 19589000 19589038 -25318532 + AT_rich Low_complexity Low_complexity 1 38 0 185 246 46 62 chr21 19589411 19589476 -25318094 - MER5B DNA MER1_type -20 158 95 218 200 20 0 chr21 19589619 19589669 -25317901 + (CA)n Simple_repeat Simple_repeat 1 51 0 23 68 0 0 chr21 19591128 19591172 -25316398 + AT_rich Low_complexity Low_complexity 1 44 0 2311 307 188 25 chr21 19591717 19592384 -25315186 + L2 LINE L2 950 1507 -1807 189 74 0 0 chr21 19592384 19592411 -25315159 + (CA)n Simple_repeat Simple_repeat 2 28 0 2311 307 188 25 chr21 19592411 19593052 -25314518 + L2 LINE L2 1507 2042 -1272 429 220 0 0 chr21 19593052 19593143 -25314427 - L1PA15 LINE L1 -7 6158 6068 2311 307 188 25 chr21 19593143 19593278 -25314292 + L2 LINE L2 2042 2629 -685 346 143 36 0 chr21 19593284 19593340 -25314230 - MER57B LTR ERV1 -195 239 182 293 345 84 0 chr21 19593350 19593469 -25314101 + L2 LINE L2 2642 2770 -544 923 152 12 30 chr21 19593549 19593714 -25313856 - FRAM SINE Alu -15 161 1 450 196 0 0 chr21 19595749 19595846 -25311724 + (TA)n Simple_repeat Simple_repeat 2 98 0 356 330 62 31 chr21 19596097 19596355 -25311215 + L1MEc LINE L1 157 422 -5974 321 26 0 0 chr21 19596391 19596429 -25311141 + (TG)n Simple_repeat Simple_repeat 2 39 0 1138 275 35 33 chr21 19596476 19597022 -25310548 + L1MEc LINE L1 606 1152 -5244 393 154 66 55 chr21 19597037 19597128 -25310442 - L1P5 LINE L1 -495 5659 5568 280 228 0 0 chr21 19597897 19597954 -25309616 - L1MC5 LINE L1 -74 7887 7831 568 179 0 0 chr21 19598398 19598504 -25309066 - L1PB4 LINE L1 -8 6148 6043 589 367 22 0 chr21 19598833 19599062 -25308508 - MIR SINE MIR -26 236 3 22 0 0 0 chr21 19599168 19599190 -25308380 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 19599217 19599258 -25308312 + AT_rich Low_complexity Low_complexity 1 41 0 247 344 82 28 chr21 19599427 19599606 -25307964 + L2 LINE L2 2461 2662 -652 1774 174 28 25 chr21 19599606 19599968 -25307602 - MLT1A1 LTR MaLR -2 363 1 247 344 82 28 chr21 19599968 19600070 -25307500 + L2 LINE L2 2662 2757 -557 2818 209 71 32 chr21 19600112 19600889 -25306681 - L1MB8 LINE L1 -2 6176 5370 458 328 17 23 chr21 19601087 19601261 -25306309 + MER45A DNA AcHobo 2 174 -4 544 283 94 16 chr21 19601827 19602018 -25305552 + MIR SINE MIR 23 228 -34 22 0 0 0 chr21 19602081 19602103 -25305467 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr21 19603022 19603049 -25304521 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr21 19605689 19605711 -25301859 + AT_rich Low_complexity Low_complexity 1 22 0 1411 41 0 0 chr21 19606150 19606321 -25301249 + L1PA3 LINE L1 5983 6153 -2 237 33 0 0 chr21 19606351 19606381 -25301189 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 30 77 0 0 chr21 19606807 19606872 -25300698 + AT_rich Low_complexity Low_complexity 1 65 0 482 296 43 31 chr21 19608324 19608581 -25298989 - L1ME1 LINE L1 -6 6160 5901 374 78 0 16 chr21 19608625 19608689 -25298881 - L1MA9 LINE L1 -10 6302 6240 4453 184 41 17 chr21 19608708 19609774 -25297796 - L1MA7 LINE L1 -2 6289 5198 436 291 58 5 chr21 19609811 19610000 -25297570 - L1ME1 LINE L1 -328 5838 5640 533 263 59 42 chr21 19610026 19610315 -25297255 - L1MB8 LINE L1 -968 5178 4885 * 1346 273 58 8 chr21 19610302 19610917 -25296653 - L1MB8 LINE L1 -2884 3262 2617 2998 115 22 2 chr21 19610917 19611361 -25296209 - MLT2A2 LTR ERVL 0 453 1 889 256 94 32 chr21 19611361 19611530 -25296040 - L1MB8 LINE L1 -3525 2621 2464 1271 234 102 52 chr21 19611530 19612008 -25295562 - MLT1D LTR MaLR 0 505 4 889 256 94 32 chr21 19612008 19612272 -25295298 - L1MB8 LINE L1 -3682 2464 2161 560 251 117 12 chr21 19612291 19612462 -25295108 - MER58C DNA MER1_type -26 189 1 219 69 0 0 chr21 19612644 19612673 -25294897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1129 286 71 71 chr21 19612852 19613665 -25293905 - L1ME LINE L1 -4358 1722 881 2050 109 0 51 chr21 19613665 19613977 -25293593 - AluSg SINE Alu -14 296 1 1129 286 71 71 chr21 19613977 19614539 -25293031 - L1ME LINE L1 -5199 881 321 29 28 0 0 chr21 19614945 19614981 -25292589 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr21 19615407 19615441 -25292129 + AT_rich Low_complexity Low_complexity 1 34 0 417 39 0 0 chr21 19616519 19616570 -25291000 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr21 19616984 19617014 -25290556 + AT_rich Low_complexity Low_complexity 1 30 0 1061 255 87 26 chr21 19618149 19618323 -25289247 - MLT1A2 LTR MaLR 0 374 212 411 21 0 0 chr21 19618323 19618371 -25289199 + (CA)n Simple_repeat Simple_repeat 1 48 0 1061 255 87 26 chr21 19618371 19618541 -25289029 - MLT1A2 LTR MaLR -162 212 9 278 322 50 40 chr21 19618853 19619052 -25288518 - L2 LINE L2 -4 3309 3109 383 325 38 33 chr21 19619472 19619684 -25287886 - L2 LINE L2 -281 3032 2820 634 224 0 0 chr21 19619689 19619823 -25287747 + MER3 DNA MER1_type 35 168 -41 1379 175 14 127 chr21 19619826 19620072 -25287498 + MER3 DNA MER1_type 2234 2506 -118 2850 168 37 18 chr21 19620072 19620219 -25287351 - L1MA4 LINE L1 -1 6299 6156 2293 138 6 6 chr21 19620219 19620581 -25286989 - THE1B LTR MaLR 0 364 3 2850 168 37 18 chr21 19620581 19621006 -25286564 - L1MA4 LINE L1 -144 6156 5716 2061 102 0 0 chr21 19621014 19621289 -25286281 - AluSc SINE Alu -29 280 6 1379 175 14 127 chr21 19621289 19621473 -25286097 + MER3 DNA MER1_type 2513 2623 -1 488 250 6 61 chr21 19621501 19621665 -25285905 - L2 LINE L2 -544 2770 2616 609 235 0 0 chr21 19622218 19622333 -25285237 + FLAM_A SINE Alu 1 115 -18 213 94 0 0 chr21 19622336 19622368 -25285202 + (TAA)n Simple_repeat Simple_repeat 1 32 0 6213 85 11 1 chr21 19623099 19624503 -25283067 - L1PA13 LINE L1 -19 6144 4743 2319 50 4 0 chr21 19625623 19625904 -25281666 - AluY SINE Alu 0 311 30 1921 135 3 35 chr21 19626196 19626507 -25281063 + AluSx SINE Alu 1 301 -11 3483 188 22 1 chr21 19626579 19627569 -25280001 + L1PB1 LINE L1 4553 5559 -592 5475 182 252 26 chr21 19627573 19629004 -25278566 - MER52A LTR ERV1 0 1755 2 3650 112 52 0 chr21 19629004 19629567 -25278003 + L1PB1 LINE L1 5559 6150 -1 1080 279 43 30 chr21 19629988 19630357 -25277213 - MER87 LTR ERV1 0 541 168 27 29 0 0 chr21 19630709 19630743 -25276827 + AT_rich Low_complexity Low_complexity 1 34 0 901 126 74 0 chr21 19631740 19631875 -25275695 - AluSg/x SINE Alu -14 298 154 2849 194 79 9 chr21 19632350 19632983 -25274587 - L1MA7 LINE L1 -5 6286 5610 4361 75 33 4 chr21 19632983 19633985 -25273585 + MER11A LTR ERVK 1 1266 0 1568 185 28 6 chr21 19633985 19634309 -25273261 - L1MA7 LINE L1 -697 5615 5285 281 189 0 14 chr21 19635399 19635417 -25272153 + (TATATG)n Simple_repeat Simple_repeat 2 19 -55 1679 143 110 33 chr21 19635417 19635753 -25271817 + THE1B LTR MaLR 3 364 0 281 189 0 14 chr21 19635753 19635808 -25271762 + (TATATG)n Simple_repeat Simple_repeat 19 74 0 251 289 6 0 chr21 19635812 19635976 -25271594 + (TA)n Simple_repeat Simple_repeat 1 165 0 21 36 0 0 chr21 19636077 19636105 -25271465 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 19636622 19636652 -25270918 + AT_rich Low_complexity Low_complexity 1 30 0 1628 181 60 77 chr21 19637236 19637701 -25269869 - MER31B LTR ERV1 -9 457 1 28 29 0 0 chr21 19639563 19639598 -25267972 + AT_rich Low_complexity Low_complexity 1 35 0 188 356 67 0 chr21 19639829 19639933 -25267637 + MIR SINE MIR 103 213 -49 2234 65 0 71 chr21 19640971 19641293 -25266277 + AluY SINE Alu 1 299 -12 2305 90 0 0 chr21 19641869 19642159 -25265411 + AluSc SINE Alu 1 290 -19 271 223 0 43 chr21 19642184 19642278 -25265292 - L1MC4 LINE L1 -1339 6703 6614 186 43 0 0 chr21 19642279 19642302 -25265268 + (TA)n Simple_repeat Simple_repeat 1 23 0 22 70 0 0 chr21 19642584 19642627 -25264943 + AT_rich Low_complexity Low_complexity 1 43 0 1347 238 39 32 chr21 19643193 19643572 -25263998 - MLT1B LTR MaLR -5 462 4 12958 147 19 38 chr21 19644640 19645601 -25261969 - Tigger1 DNA MER2_type 0 2418 1440 2320 74 3 0 chr21 19645601 19645910 -25261660 - AluY SINE Alu -1 310 1 12958 147 19 38 chr21 19645910 19646472 -25261098 - Tigger1 DNA MER2_type -978 1440 869 2475 49 10 0 chr21 19646472 19646776 -25260794 - AluY SINE Alu -4 307 1 12958 147 19 38 chr21 19646776 19647715 -25259855 - Tigger1 DNA MER2_type -1549 869 2 222 355 123 0 chr21 19648830 19648985 -25258585 + L3b LINE CR1 1227 1400 -183 267 157 0 0 chr21 19649226 19649277 -25258293 + (TA)n Simple_repeat Simple_repeat 1 51 0 1491 251 13 0 chr21 19649784 19650162 -25257408 + L1MA4 LINE L1 5912 6294 -6 189 0 0 0 chr21 19650446 19650467 -25257103 + (T)n Simple_repeat Simple_repeat 1 21 0 5678 35 0 0 chr21 19650501 19651179 -25256391 - L1PA4 LINE L1 -1 6154 5477 23 33 0 0 chr21 19651689 19651719 -25255851 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr21 19652124 19652156 -25255414 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr21 19652811 19652838 -25254732 + AT_rich Low_complexity Low_complexity 1 27 0 232 313 0 0 chr21 19653045 19653109 -25254461 + CT-rich Low_complexity Low_complexity 4 67 0 1427 183 76 3 chr21 19653295 19653601 -25253969 + L1PB4 LINE L1 5840 6151 -3 28 71 0 0 chr21 19654152 19654208 -25253362 + AT_rich Low_complexity Low_complexity 1 56 0 269 245 138 43 chr21 19654443 19654537 -25253033 + MIR SINE MIR 160 262 0 643 313 154 30 chr21 19654554 19654995 -25252575 - L3 LINE CR1 -426 1151 656 278 329 24 0 chr21 19655425 19655510 -25252060 - L2 LINE L2 0 3313 3227 2216 110 0 22 chr21 19655890 19656208 -25251362 + AluSq SINE Alu 2 312 -1 463 134 0 12 chr21 19656328 19656410 -25251160 + L1PA6 LINE L1 6069 6149 -5 1210 247 51 20 chr21 19657000 19657352 -25250218 - MLT1A1 LTR MaLR -2 363 1 995 142 23 5 chr21 19658590 19658808 -25248762 + L1MA9 LINE L1 5700 6075 -237 325 332 122 25 chr21 19659017 19659255 -25248315 - MIR SINE MIR -1 261 1 205 169 68 51 chr21 19660008 19660067 -25247503 - MIR SINE MIR -7 255 196 245 231 56 120 chr21 19660344 19660452 -25247118 - MER91A DNA MER1_type -9 187 87 1768 176 7 3 chr21 19661159 19661466 -25246104 - AluSx SINE Alu -4 308 1 1736 127 24 115 chr21 19661538 19661905 -25245665 - THE1C LTR MaLR 0 375 47 2325 88 0 7 chr21 19661905 19662211 -25245359 + AluSc SINE Alu 1 304 -5 1736 127 24 115 chr21 19662211 19662253 -25245317 - THE1C LTR MaLR -328 47 3 210 37 0 0 chr21 19662259 19662286 -25245284 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 192 0 19 chr21 19663847 19663899 -25243671 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr21 19664509 19664531 -25243039 + AT_rich Low_complexity Low_complexity 1 22 0 2145 88 0 14 chr21 19664597 19664945 -25242625 + AluY SINE Alu 1 344 0 210 200 14 43 chr21 19667605 19667675 -25239895 + (TTATA)n Simple_repeat Simple_repeat 1 68 0 1898 140 6 41 chr21 19667899 19668214 -25239356 - AluSx SINE Alu -8 304 1 201 74 0 0 chr21 19668348 19668375 -25239195 + (TTG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr21 19668614 19668641 -25238929 + (TG)n Simple_repeat Simple_repeat 2 28 0 236 327 49 86 chr21 19668641 19669026 -25238544 - L1MEd LINE L1 -5738 381 11 21 0 0 0 chr21 19669048 19669069 -25238501 + AT_rich Low_complexity Low_complexity 1 21 0 1369 218 19 29 chr21 19669940 19670247 -25237323 + AluJo SINE Alu 1 304 -8 2175 85 0 36 chr21 19670262 19670568 -25237002 - AluSx SINE Alu -17 295 1 613 235 50 0 chr21 19671300 19671479 -25236091 - L1MD3 LINE L1 -3 7992 7805 1605 172 6 28 chr21 19671539 19671859 -25235711 + AluSq SINE Alu 1 313 0 761 344 80 17 chr21 19672569 19673031 -25234539 - L2 LINE L2 -4 3309 2819 272 316 187 14 chr21 19673063 19673202 -25234368 + MER5A DNA MER1_type 27 189 0 1045 300 118 53 chr21 19673202 19673839 -25233731 - L2 LINE L2 -504 2810 2133 764 60 0 0 chr21 19674124 19674224 -25233346 - L1P LINE L1 -3106 3040 2941 2657 53 3 3 chr21 19674226 19674565 -25233005 + L1PA6 LINE L1 5803 6141 -13 15386 141 11 6 chr21 19675050 19677646 -25229924 - L1PA15 LINE L1 -2065 4081 1473 8053 119 7 1 chr21 19677645 19679682 -25227888 + L1PA15 LINE L1 4095 6181 0 * 22 56 0 0 chr21 19680697 19680733 -25226837 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr21 19681041 19681069 -25226501 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 19681306 19681334 -25226236 + AT_rich Low_complexity Low_complexity 1 28 0 233 163 20 0 chr21 19681364 19681413 -25226157 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 59 0 0 chr21 19681426 19681460 -25226110 + (TG)n Simple_repeat Simple_repeat 1 34 0 1478 153 71 19 chr21 19681501 19681769 -25225801 - AluJo SINE Alu -30 282 1 198 0 0 0 chr21 19681911 19681933 -25225637 + (TATG)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr21 19681933 19681974 -25225596 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr21 19683308 19683335 -25224235 + (CA)n Simple_repeat Simple_repeat 1 27 0 287 213 13 0 chr21 19683335 19683410 -25224160 + (TA)n Simple_repeat Simple_repeat 2 77 0 271 265 68 83 chr21 19683463 19683595 -25223975 - L2 LINE L2 0 3313 3184 37 23 0 0 chr21 19683621 19683665 -25223905 + AT_rich Low_complexity Low_complexity 1 44 0 486 89 71 18 chr21 19683665 19683833 -25223737 + (TA)n Simple_repeat Simple_repeat 1 177 0 24 0 0 0 chr21 19683834 19683858 -25223712 + AT_rich Low_complexity Low_complexity 1 24 0 180 150 53 35 chr21 19683864 19683977 -25223593 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 * 437 81 103 7 chr21 19683950 19684020 -25223550 + (TA)n Simple_repeat Simple_repeat 1 63 -222 32 0 0 0 chr21 19684020 19684052 -25223518 + AT_rich Low_complexity Low_complexity 1 32 0 437 81 103 7 chr21 19684052 19684211 -25223359 + (TA)n Simple_repeat Simple_repeat 63 285 0 227 145 48 36 chr21 19684214 19684297 -25223273 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 316 362 56 21 chr21 19684318 19684656 -25222914 - L2 LINE L2 -168 3145 2743 212 258 61 15 chr21 19685315 19685381 -25222189 - L2 LINE L2 -5 3267 3199 198 0 0 0 chr21 19686350 19686372 -25221198 + (A)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr21 19686854 19686887 -25220683 + AT_rich Low_complexity Low_complexity 1 33 0 476 153 0 0 chr21 19687713 19687798 -25219772 + L1MA9 LINE L1 4964 5048 -1098 1489 248 34 0 chr21 19687801 19688152 -25219418 + MLT1A1 LTR MaLR 3 365 0 3111 244 41 73 chr21 19688152 19688499 -25219071 + MLT1A1-int LTR MaLR 1 358 -1377 2145 125 0 0 chr21 19688499 19688795 -25218775 + AluSg SINE Alu 1 296 -14 3111 244 41 73 chr21 19688795 19689590 -25217980 + MLT1A1-int LTR MaLR 358 1106 -629 1337 200 21 14 chr21 19689604 19689889 -25217681 + MLT1A1 LTR MaLR 79 365 0 2439 177 76 105 chr21 19689890 19690982 -25216588 + L1MA9 LINE L1 5046 6106 -206 821 175 44 31 chr21 19691020 19691249 -25216321 + L1MA9 LINE L1 6081 6312 0 346 129 0 32 chr21 19695622 19695684 -25211886 + FLAM SINE Alu 73 132 -1 23 33 0 0 chr21 19696333 19696363 -25211207 + AT_rich Low_complexity Low_complexity 1 30 0 680 196 8 0 chr21 19696445 19696578 -25210992 + FLAM_C SINE Alu 1 134 -9 32 43 0 0 chr21 19696689 19696735 -25210835 + AT_rich Low_complexity Low_complexity 1 46 0 192 77 0 0 chr21 19697717 19697743 -25209827 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 339 149 0 0 chr21 19698514 19698588 -25208982 + (TA)n Simple_repeat Simple_repeat 2 75 0 1558 195 0 49 chr21 19698708 19699036 -25208534 + AluJb SINE Alu 1 312 0 28 71 0 0 chr21 19700899 19700955 -25206615 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr21 19702647 19702668 -25204902 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 19703786 19703822 -25203748 + AT_rich Low_complexity Low_complexity 1 36 0 390 42 0 0 chr21 19704112 19704160 -25203410 + (CA)n Simple_repeat Simple_repeat 2 49 0 369 158 30 0 chr21 19704445 19704546 -25203024 + (TA)n Simple_repeat Simple_repeat 1 104 0 285 241 21 55 chr21 19705918 19706063 -25201507 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 273 115 77 0 chr21 19706123 19706201 -25201369 + (TA)n Simple_repeat Simple_repeat 1 84 0 195 306 92 20 chr21 19706526 19706624 -25200946 + L2 LINE L2 3206 3310 -3 197 399 27 11 chr21 19707482 19707665 -25199905 - MIR SINE MIR -14 248 63 25 31 0 0 chr21 19710296 19710328 -25197242 + AT_rich Low_complexity Low_complexity 1 32 0 2426 59 0 3 chr21 19710446 19710753 -25196817 + AluY SINE Alu 1 306 -5 312 350 14 21 chr21 19711062 19711202 -25196368 - L2 LINE L2 0 3272 3134 2510 46 0 3 chr21 19711229 19711535 -25196035 + AluY SINE Alu 1 305 -6 216 360 111 29 chr21 19711591 19711897 -25195673 - L2 LINE L2 -339 2975 2645 399 327 0 40 chr21 19711971 19712121 -25195449 - L2 LINE L2 -845 2469 2326 207 326 22 11 chr21 19712275 19712364 -25195206 + L2 LINE L2 3223 3312 -1 389 313 136 11 chr21 19712474 19712739 -25194831 - L2 LINE L2 -1266 2048 1751 2068 115 14 0 chr21 19712966 19713254 -25194316 + AluSg SINE Alu 1 292 -18 28 61 0 0 chr21 19713466 19713515 -25194055 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 19713611 19713632 -25193938 + AT_rich Low_complexity Low_complexity 1 21 0 36 53 0 0 chr21 19713880 19713937 -25193633 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr21 19715782 19715803 -25191767 + AT_rich Low_complexity Low_complexity 1 21 0 2625 33 0 3 chr21 19717167 19717474 -25190096 + AluY SINE Alu 1 306 -5 23 0 0 0 chr21 19719421 19719444 -25188126 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 19719624 19719650 -25187920 + AT_rich Low_complexity Low_complexity 1 26 0 1774 149 3 16 chr21 19720095 19720440 -25187130 - AluSx SINE Alu 0 341 1 329 214 10 0 chr21 19720514 19720612 -25186958 + CT-rich Low_complexity Low_complexity 2 100 0 22 0 0 0 chr21 19721699 19721721 -25185849 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr21 19722676 19722698 -25184872 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 19723171 19723202 -25184368 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr21 19723759 19723787 -25183783 + AT_rich Low_complexity Low_complexity 1 28 0 2312 214 4 16 chr21 19724521 19725035 -25182535 - L1MC1 LINE L1 -1 6332 5825 32 0 0 0 chr21 19725963 19725995 -25181575 + AT_rich Low_complexity Low_complexity 1 32 0 204 125 36 18 chr21 19727125 19727181 -25180389 + (TA)n Simple_repeat Simple_repeat 1 57 0 2655 195 26 3 chr21 19727215 19728088 -25179482 - L1P4 LINE L1 -464 5702 4808 2026 161 57 10 chr21 19728098 19728501 -25179069 + L1PA16 LINE L1 5736 6157 -9 26 74 0 0 chr21 19729389 19729443 -25178127 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr21 19730260 19730283 -25177287 + AT_rich Low_complexity Low_complexity 1 23 0 2101 102 20 3 chr21 19730391 19730685 -25176885 - AluSc SINE Alu -10 299 1 25 0 0 0 chr21 19732129 19732154 -25175416 + AT_rich Low_complexity Low_complexity 1 25 0 2326 216 43 4 chr21 19734252 19734781 -25172789 - MER44D DNA MER2_type 0 605 1 26 82 0 0 chr21 19734961 19735022 -25172548 + AT_rich Low_complexity Low_complexity 1 61 0 297 301 58 39 chr21 19735382 19735485 -25172085 + MIR SINE MIR 82 186 -76 1318 123 41 8 chr21 19735936 19736179 -25171391 - L1MA2 LINE L1 0 6304 6054 689 243 9 46 chr21 19736375 19736593 -25170977 + MLT1A2 LTR MaLR 119 328 -46 26 50 0 0 chr21 19736879 19736919 -25170651 + AT_rich Low_complexity Low_complexity 1 40 0 316 282 71 99 chr21 19736919 19737171 -25170399 - MIR SINE MIR 0 262 18 22 88 0 0 chr21 19738215 19738272 -25169298 + AT_rich Low_complexity Low_complexity 1 57 0 2254 81 14 7 chr21 19738655 19738951 -25168619 + AluSc SINE Alu 1 298 -11 336 83 0 0 chr21 19739943 19739991 -25167579 + (T)n Simple_repeat Simple_repeat 1 48 0 752 251 61 42 chr21 19741349 19741679 -25165891 - L1ME2 LINE L1 -25 6139 5804 586 250 102 33 chr21 19741912 19742156 -25165414 - L1ME3A LINE L1 -1 6169 5909 6054 191 35 18 chr21 19742161 19744355 -25163215 - L1MA4 LINE L1 -43 6257 4023 2702 240 17 11 chr21 19744354 19745113 -25162457 - L1MA4 LINE L1 -3012 3134 2371 * 246 214 43 17 chr21 19745219 19745336 -25162234 + (TA)n Simple_repeat Simple_repeat 1 120 0 1883 103 42 0 chr21 19745378 19745640 -25161930 + AluSq SINE Alu 41 313 0 420 310 86 46 chr21 19745655 19746262 -25161308 - L1ME2 LINE L1 -975 5171 4541 24 32 0 0 chr21 19746634 19746665 -25160905 + AT_rich Low_complexity Low_complexity 1 31 0 227 86 0 0 chr21 19747302 19747337 -25160233 - L1ME3A LINE L1 -253 5911 5877 25 51 0 0 chr21 19747495 19747534 -25160036 + AT_rich Low_complexity Low_complexity 1 39 0 1903 132 54 0 chr21 19748720 19749015 -25158555 + AluSx SINE Alu 1 311 -1 263 273 67 87 chr21 19749119 19749269 -25158301 + MIR SINE MIR 90 236 -26 21 0 0 0 chr21 19749749 19749770 -25157800 + AT_rich Low_complexity Low_complexity 1 21 0 588 351 100 26 chr21 19749858 19750685 -25156885 - L2 LINE L2 -3 3310 2417 207 296 74 32 chr21 19751284 19751473 -25156097 - L2 LINE L2 -3 3310 3114 5729 194 64 58 chr21 19751697 19753140 -25154430 + L1MCa LINE L1 7 1459 -4967 330 198 11 28 chr21 19753144 19753326 -25154244 + (TA)n Simple_repeat Simple_repeat 2 180 0 181 181 0 28 chr21 19753388 19753460 -25154110 + (TA)n Simple_repeat Simple_repeat 2 71 0 777 195 29 83 chr21 19753490 19753765 -25153805 + L1MCa LINE L1 1480 1768 -4659 1931 139 20 3 chr21 19753765 19754068 -25153502 - AluSg SINE Alu -2 308 1 777 195 29 83 chr21 19754068 19754123 -25153447 + L1MCa LINE L1 1768 2186 -4241 2040 199 9 14 chr21 19754179 19754616 -25152954 - L1 LINE L1 -836 5310 4876 1515 237 69 44 chr21 19754617 19755183 -25152387 + L1MC1 LINE L1 1770 2305 -3910 198 0 0 0 chr21 19755183 19755205 -25152365 + (CA)n Simple_repeat Simple_repeat 1 22 0 1515 237 69 44 chr21 19755205 19755582 -25151988 + L1MC1 LINE L1 2305 2671 -3544 593 130 0 0 chr21 19755592 19755684 -25151886 + AluSp/q SINE Alu 201 292 -21 218 292 0 0 chr21 19755705 19755770 -25151800 + A-rich Low_complexity Low_complexity 1 65 0 7841 233 36 18 chr21 19755818 19758258 -25149312 + L1MC1 LINE L1 2715 5246 -1156 1887 84 0 4 chr21 19758258 19758496 -25149074 - AluSg SINE Alu -14 296 60 7841 233 36 18 chr21 19758496 19759668 -25147902 + L1MC1 LINE L1 5246 6395 -7 221 288 17 102 chr21 19760829 19760947 -25146623 - L3 LINE CR1 -504 1073 966 25 0 0 0 chr21 19760987 19761012 -25146558 + AT_rich Low_complexity Low_complexity 1 25 0 47 19 0 0 chr21 19761174 19761228 -25146342 + AT_rich Low_complexity Low_complexity 1 54 0 820 159 0 16 chr21 19761228 19761538 -25146032 + (TTTAA)n Simple_repeat Simple_repeat 1 304 0 238 325 153 13 chr21 19761796 19762254 -25145316 - L1MC/D LINE L1 -1959 5849 5328 1742 48 4 57 chr21 19762904 19763152 -25144418 + AluY SINE Alu 62 296 -15 395 233 16 8 chr21 19763250 19763375 -25144195 + L1ME LINE L1 5694 5819 -302 28 29 0 0 chr21 19763525 19763560 -25144010 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr21 19763639 19763665 -25143905 + AT_rich Low_complexity Low_complexity 1 26 0 602 263 59 109 chr21 19763793 19764150 -25143420 - HsTC2 DNA Tc2 -277 1621 1283 1155 247 70 38 chr21 19764354 19764771 -25142799 - L1MC2 LINE L1 -251 6093 5664 35 63 0 0 chr21 19765240 19765303 -25142267 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr21 19765877 19765898 -25141672 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr21 19766525 19766573 -25140997 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr21 19767423 19767451 -25140119 + AT_rich Low_complexity Low_complexity 1 28 0 2153 102 10 0 chr21 19767530 19767834 -25139736 - AluSp SINE Alu -6 307 1 189 0 0 0 chr21 19768221 19768242 -25139328 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 659 110 11 0 chr21 19768258 19768349 -25139221 - AluSx SINE Alu -27 285 194 996 121 0 0 chr21 19768350 19768491 -25139079 - AluSx SINE Alu -172 141 1 28 48 0 0 chr21 19768776 19768818 -25138752 + AT_rich Low_complexity Low_complexity 1 42 0 246 62 0 0 chr21 19769269 19769301 -25138269 + (TTG)n Simple_repeat Simple_repeat 2 33 0 26 64 0 0 chr21 19769935 19769982 -25137588 + AT_rich Low_complexity Low_complexity 1 47 0 233 106 0 43 chr21 19771030 19771077 -25136493 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 363 96 0 0 chr21 19771399 19771451 -25136119 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 36 0 0 chr21 19772060 19772088 -25135482 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 19772149 19772178 -25135392 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr21 19772232 19772279 -25135291 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr21 19772748 19772769 -25134801 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr21 19773463 19773498 -25134072 + AT_rich Low_complexity Low_complexity 1 35 0 670 247 50 11 chr21 19774693 19774875 -25132695 + MER5A DNA MER1_type 1 189 0 30 0 0 0 chr21 19775707 19775737 -25131833 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr21 19775879 19775942 -25131628 + AT_rich Low_complexity Low_complexity 1 63 0 321 368 20 49 chr21 19776601 19776848 -25130722 + MIR SINE MIR 19 258 -4 318 284 23 0 chr21 19777933 19778021 -25129549 - L1MC4 LINE L1 -1339 6703 6614 261 360 49 5 chr21 19778444 19778647 -25128923 - MLT1D-int LTR MaLR -870 501 290 1435 217 106 56 chr21 19778778 19779167 -25128403 - MLT1D LTR MaLR 0 505 86 198 0 0 0 chr21 19779176 19779198 -25128372 + (TGG)n Simple_repeat Simple_repeat 1 22 0 1903 166 0 3 chr21 19779198 19779501 -25128069 - AluSx SINE Alu -8 304 1 1435 217 106 56 chr21 19779501 19779591 -25127979 - MLT1D LTR MaLR -419 86 2 5625 229 21 2 chr21 19779776 19780922 -25126648 - ERVL LTR ERVL -2366 3398 2231 2046 252 57 16 chr21 19780896 19781459 -25126111 - ERVL LTR ERVL -5178 586 1 * 23 54 0 0 chr21 19781609 19781646 -25125924 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr21 19781771 19781795 -25125775 + AT_rich Low_complexity Low_complexity 1 24 0 1069 293 17 10 chr21 19782259 19782662 -25124908 - L1M4 LINE L1 -3413 2733 2328 701 268 34 48 chr21 19782677 19782787 -25124783 + L1ME1 LINE L1 5812 5922 -244 338 42 21 0 chr21 19782787 19782835 -25124735 + (CA)n Simple_repeat Simple_repeat 2 50 0 701 268 34 48 chr21 19782835 19783079 -25124491 + L1ME1 LINE L1 5922 6161 -5 1888 161 132 5 chr21 19783623 19784003 -25123567 + MSTA LTR MaLR 1 428 0 2067 168 73 71 chr21 19784188 19784683 -25122887 - L1PA16 LINE L1 -3 6814 6319 1772 209 52 11 chr21 19784687 19785055 -25122515 + MSTB LTR MaLR 1 383 -43 324 155 56 0 chr21 19785079 19785150 -25122420 + MSTB LTR MaLR 352 426 0 13039 239 19 25 chr21 19785153 19788028 -25119542 - L1PA16 LINE L1 -500 6316 3464 2032 147 0 3 chr21 19788028 19788328 -25119242 - AluSg1 SINE Alu -10 299 1 13039 239 19 25 chr21 19788328 19790159 -25117411 - L1PA16 LINE L1 -3352 3464 1624 2029 149 3 9 chr21 19790221 19790549 -25117021 + THE1B LTR MaLR 1 326 -38 229 0 185 0 chr21 19790552 19790633 -25116937 + (TTAA)n Simple_repeat Simple_repeat 2 97 0 23 68 0 0 chr21 19790634 19790678 -25116892 + AT_rich Low_complexity Low_complexity 1 44 0 245 86 29 0 chr21 19790678 19790713 -25116857 + THE1B LTR MaLR 340 375 0 1359 344 47 23 chr21 19790728 19791651 -25115919 - L1PA16 LINE L1 -5280 1507 14 1827 173 16 0 chr21 19791657 19791964 -25115606 - AluSx SINE Alu 0 312 1 1093 238 64 51 chr21 19792129 19792520 -25115050 + LTR47B LTR ERVL 11 406 -37 26 0 0 0 chr21 19792647 19792673 -25114897 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr21 19792866 19792890 -25114680 + AT_rich Low_complexity Low_complexity 1 24 0 1948 141 3 0 chr21 19792893 19793215 -25114355 + AluSx SINE Alu 1 323 0 927 249 47 30 chr21 19793371 19793800 -25113770 - L1MDb LINE L1 -5079 1330 895 2254 110 48 20 chr21 19793838 19794192 -25113378 - THE1B LTR MaLR 0 364 1 9349 109 36 81 chr21 19794192 19795845 -25111725 - THE1B-int LTR MaLR 0 1580 1 1948 149 19 27 chr21 19795845 19796221 -25111349 - THE1C LTR MaLR 0 375 3 1439 230 3 0 chr21 19796388 19796671 -25110899 + AluJb SINE Alu 1 284 -28 23 33 0 0 chr21 19796672 19796702 -25110868 + AT_rich Low_complexity Low_complexity 1 30 0 1513 227 44 10 chr21 19797253 19797636 -25109934 + MSTD LTR MaLR 1 396 0 335 298 102 85 chr21 19799292 19799415 -25108155 - MLT1K LTR MaLR -34 554 435 616 206 15 0 chr21 19799415 19799546 -25108024 + FLAM_C SINE Alu 1 133 0 335 298 102 85 chr21 19799546 19799764 -25107806 - MLT1K LTR MaLR -153 435 207 21 36 0 0 chr21 19800000 19800028 -25107542 + AT_rich Low_complexity Low_complexity 1 28 0 1068 132 89 0 chr21 19800375 19800565 -25107005 - L1MA2 LINE L1 0 6304 6098 556 108 0 0 chr21 19800566 19800649 -25106921 + L1MA1 LINE L1 5879 5961 -341 598 251 47 124 chr21 19800683 19801193 -25106377 + L1MDb LINE L1 7 550 -5859 779 194 120 78 chr21 19801229 19801336 -25106234 + L1MDb LINE L1 656 757 -5652 1408 216 70 6 chr21 19801336 19801679 -25105891 + MLT1A1 LTR MaLR 1 365 0 779 194 120 78 chr21 19801679 19801829 -25105741 + L1MDb LINE L1 757 924 -5485 1341 267 61 19 chr21 19801829 19802388 -25105182 - LTR68 LTR ERV1 0 740 94 2060 123 51 21 chr21 19802409 19802743 -25104827 + THE1B LTR MaLR 1 344 -20 4487 84 2 0 chr21 19802749 19803347 -25104223 + THE1B-int LTR MaLR 2 600 -980 1873 129 38 7 chr21 19803380 19803667 -25103903 - AluSx SINE Alu -16 296 1 1962 137 3 38 chr21 19804648 19804963 -25102607 - AluSx SINE Alu -8 304 1 373 271 99 26 chr21 19805057 19805208 -25102362 + MER97b DNA MER1_type? 15 176 -877 724 236 50 0 chr21 19806265 19806464 -25101106 + MER3 DNA MER1_type 1 209 0 1816 165 62 15 chr21 19806688 19807027 -25100543 - MLT1A1 LTR MaLR 0 365 11 288 267 38 19 chr21 19807105 19807210 -25100360 - MLT1I LTR MaLR -203 206 100 297 374 24 24 chr21 19807289 19807495 -25100075 + MIR SINE MIR 57 262 0 1650 150 14 35 chr21 19807775 19808061 -25099509 + AluY SINE Alu 1 280 -31 460 56 28 0 chr21 19808062 19808134 -25099436 + (TC)n Simple_repeat Simple_repeat 1 74 0 1584 184 9 44 chr21 19808195 19808510 -25099060 + AluJo SINE Alu 5 308 -4 270 0 0 0 chr21 19809166 19809196 -25098374 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 73 0 15 chr21 19810554 19810601 -25096969 + AT_rich Low_complexity Low_complexity 1 48 -19 2255 95 0 3 chr21 19810601 19810896 -25096674 - AluSx SINE Alu -18 294 1 22 73 0 15 chr21 19810896 19810916 -25096654 + AT_rich Low_complexity Low_complexity 48 67 0 1494 212 0 3 chr21 19811035 19811327 -25096243 + AluJo SINE Alu 1 291 -21 10667 180 39 14 chr21 19811983 19814073 -25093497 + Tigger1 DNA MER2_type 273 2414 -4 1580 135 135 32 chr21 19814073 19814413 -25093157 + THE1C LTR MaLR 1 375 0 9466 135 31 19 chr21 19814414 19815974 -25091596 + THE1C-int LTR MaLR 2 1580 0 1823 147 57 38 chr21 19815974 19816342 -25091228 + THE1C LTR MaLR 1 375 0 242 290 109 22 chr21 19816812 19816950 -25090620 + L2 LINE L2 2207 2356 -958 273 314 67 54 chr21 19817128 19817351 -25090219 + L2 LINE L2 2621 2846 -468 22 0 0 0 chr21 19817711 19817733 -25089837 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr21 19818416 19818454 -25089116 + AT_rich Low_complexity Low_complexity 1 38 0 540 322 25 15 chr21 19818624 19818823 -25088747 - MIR SINE MIR -56 206 6 553 331 69 7 chr21 19819275 19819550 -25088020 + L1MC4a LINE L1 6618 6909 -899 989 298 67 19 chr21 19819973 19820332 -25087238 + L1MB8 LINE L1 29 404 -6455 1933 243 155 13 chr21 19820469 19820954 -25086616 + L1MB8 LINE L1 4872 5287 -1670 1864 201 32 3 chr21 19820954 19821333 -25086237 + MLT1B LTR MaLR 1 390 0 1933 243 155 13 chr21 19821333 19821699 -25085871 + L1MB8 LINE L1 5287 5844 -1113 1363 64 0 0 chr21 19821699 19821872 -25085698 - L1PA4 LINE L1 -7 6148 5976 1667 40 0 0 chr21 19821872 19822071 -25085499 + L1PA4 LINE L1 5749 5947 -208 3771 219 34 10 chr21 19822091 19823196 -25084374 + L1MB8 LINE L1 5844 6977 -12 2098 152 11 24 chr21 19824115 19824484 -25083086 - THE1B LTR MaLR 0 364 1 11150 108 10 1 chr21 19824484 19826049 -25081521 - THE1B-int LTR MaLR 0 1580 1 1659 184 66 20 chr21 19826049 19826397 -25081173 - THE1B LTR MaLR 0 364 1 974 286 110 6 chr21 19826460 19826796 -25080774 + MLT1F LTR MaLR 169 539 -3 1204 245 19 7 chr21 19827415 19827836 -25079734 - L1 LINE L1 -2681 3465 3040 236 292 11 0 chr21 19827858 19827947 -25079623 - L1 LINE L1 -3313 2833 2744 * 4001 250 12 11 chr21 19827945 19828665 -25078905 - L1PA15-16 LINE L1 -3561 3288 2561 1803 191 0 7 chr21 19828665 19828969 -25078601 - AluSx SINE Alu -8 304 3 4001 250 12 11 chr21 19828969 19829591 -25077979 - L1PA15-16 LINE L1 -4288 2561 1941 3539 223 37 5 chr21 19829643 19830477 -25077093 + L1P LINE L1 3463 4323 -1823 198 379 43 62 chr21 19831800 19832011 -25075559 + L2 LINE L2 3050 3256 -16 557 68 14 0 chr21 19832579 19832653 -25074917 + MADE1 DNA Mariner 2 76 -4 21 0 0 0 chr21 19832930 19832951 -25074619 + AT_rich Low_complexity Low_complexity 1 21 0 348 265 106 66 chr21 19833305 19833456 -25074114 - L2 LINE L2 0 3272 3116 327 358 108 31 chr21 19833660 19834012 -25073558 - L2 LINE L2 -459 2855 2477 1795 107 55 48 chr21 19834068 19834357 -25073213 + AluSx SINE Alu 1 291 -21 1490 169 67 44 chr21 19834441 19834785 -25072785 + L1MB3 LINE L1 5832 6183 0 254 331 49 7 chr21 19835701 19835843 -25071727 + LTR67 LTR ERVL 408 555 -2 231 36 0 0 chr21 19835858 19835886 -25071684 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 243 326 45 27 chr21 19836187 19836321 -25071249 + MER5A DNA MER1_type 1 125 -53 1043 134 16 16 chr21 19837893 19838079 -25069491 - MER46B DNA MER2_type 0 236 51 327 147 59 0 chr21 19838083 19838185 -25069385 + (TA)n Simple_repeat Simple_repeat 1 108 0 2061 113 0 3 chr21 19838189 19838472 -25069098 - AluSx SINE Alu -30 282 1 1138 145 0 6 chr21 19838472 19838651 -25068919 - MER46B DNA MER2_type -180 56 4 366 208 92 31 chr21 19838878 19839008 -25068562 + MLT2B1 LTR ERVL 383 520 0 227 253 126 21 chr21 19839069 19839164 -25068406 + L1ME LINE L1 5756 5860 -310 1166 217 19 4 chr21 19839303 19839566 -25068004 + LTR48B LTR ERV1 1 267 -377 790 214 113 17 chr21 19839588 19839826 -25067744 + LTR48B LTR ERV1 384 644 0 762 275 78 73 chr21 19840096 19840795 -25066775 + L2 LINE L2 2565 3313 0 535 223 14 68 chr21 19840900 19841048 -25066522 - MER7C DNA MER2_type 0 602 463 2424 205 13 25 chr21 19841065 19841587 -25065983 - MER7C DNA MER2_type -83 519 4 403 250 78 8 chr21 19841784 19841912 -25065658 - MLT1I LTR MaLR -269 140 4 187 373 29 10 chr21 19842172 19842274 -25065296 - MER5B DNA MER1_type -3 175 72 2178 206 17 7 chr21 19842473 19842895 -25064675 + MSTB LTR MaLR 1 426 0 305 328 33 16 chr21 19844961 19845083 -25062487 - MER5A DNA MER1_type -16 173 50 920 208 10 10 chr21 19845418 19845615 -25061955 - L1MB5 LINE L1 -9 6165 5969 236 179 130 89 chr21 19846284 19846407 -25061163 + MLT1E LTR MaLR 466 593 0 818 272 0 16 chr21 19846479 19846663 -25060907 + Tigger7 DNA MER2_type 3 183 -522 380 191 0 0 chr21 19846660 19846723 -25060847 + Tigger7 DNA MER2_type 2525 2587 0 * 851 273 97 7 chr21 19846802 19847102 -25060468 - MER46C DNA MER2_type 0 338 12 22 0 0 0 chr21 19849144 19849166 -25058404 + AT_rich Low_complexity Low_complexity 1 22 0 608 256 29 40 chr21 19849620 19849897 -25057673 - LTR37B LTR ERV1 0 468 195 1705 187 0 0 chr21 19850660 19850944 -25056626 - AluJo SINE Alu -28 284 1 2202 204 24 4 chr21 19853124 19853615 -25053955 - L1MB4 LINE L1 0 6180 5680 309 373 7 20 chr21 19853671 19853824 -25053746 - L1M4 LINE L1 -6382 160 10 22 70 0 0 chr21 19854656 19854699 -25052871 + AT_rich Low_complexity Low_complexity 1 43 0 211 336 66 8 chr21 19856099 19856221 -25051349 + L2 LINE L2 2928 3056 -216 576 284 7 7 chr21 19857334 19857482 -25050088 + MER45A DNA AcHobo 3 150 -28 1925 118 32 0 chr21 19859227 19859548 -25048022 - AluSx SINE Alu 0 332 3 378 208 13 0 chr21 19859777 19859854 -25047716 + MER67D LTR ERV1 432 509 -5 303 235 0 74 chr21 19861163 19861244 -25046326 + MIR SINE MIR 28 102 -160 4766 163 0 15 chr21 19861255 19862067 -25045503 + L1MC1 LINE L1 5514 6313 -20 380 296 23 15 chr21 19862086 19862218 -25045352 + MIR SINE MIR 97 229 -33 308 221 0 0 chr21 19862588 19862656 -25044914 - Charlie1 DNA MER1_type -51 2710 2643 647 211 24 126 chr21 19862671 19862917 -25044653 - Charlie1 DNA MER1_type -2534 227 7 716 318 145 20 chr21 19864227 19864626 -25042944 + MLT1K LTR MaLR 140 588 0 6980 138 8 37 chr21 19864726 19865888 -25041682 - THE1C-int LTR MaLR -432 1148 21 1926 158 27 29 chr21 19865894 19866268 -25041302 - THE1C LTR MaLR 0 375 3 311 222 42 0 chr21 19867085 19867157 -25040413 + Tigger2 DNA MER2_type 1 75 -2643 * 2113 188 16 18 chr21 19867154 19867591 -25039979 + Tigger2 DNA MER2_type 2283 2718 0 26 50 0 0 chr21 19867775 19867815 -25039755 + AT_rich Low_complexity Low_complexity 1 40 0 1990 124 7 0 chr21 19867816 19868098 -25039472 - AluSp SINE Alu -29 284 1 7590 176 25 33 chr21 19868103 19870489 -25037081 - L1MA5A LINE L1 0 6297 3942 1880 128 3 28 chr21 19870489 19870778 -25036792 + AluSx SINE Alu 1 282 -30 7590 176 25 33 chr21 19870778 19871232 -25036338 - L1MA5A LINE L1 -2355 3942 3486 21 36 0 0 chr21 19871240 19871268 -25036302 + AT_rich Low_complexity Low_complexity 1 28 0 2372 250 53 6 chr21 19872165 19872789 -25034781 - MER82 DNA MER2_type 0 653 1 1668 175 3 10 chr21 19872860 19873157 -25034413 - AluJb SINE Alu -15 297 3 258 279 15 0 chr21 19874325 19874393 -25033177 + (TATG)n Simple_repeat Simple_repeat 3 71 0 2358 136 3 0 chr21 19874753 19875107 -25032463 + THE1A LTR MaLR 1 355 0 11090 110 4 1 chr21 19875107 19876682 -25030888 + THE1A-int LTR MaLR 1 1580 0 2509 102 3 0 chr21 19876682 19877025 -25030545 + THE1A LTR MaLR 1 344 -11 531 350 129 29 chr21 19877252 19877880 -25029690 + L2 LINE L2 1990 2680 -634 21 57 0 0 chr21 19879022 19879057 -25028513 + AT_rich Low_complexity Low_complexity 1 35 0 1729 221 83 66 chr21 19879446 19879949 -25027621 - MLT2B1 LTR ERVL -6 514 3 274 292 0 0 chr21 19880016 19880081 -25027489 + MIR SINE MIR 11 75 -187 1255 256 142 34 chr21 19880480 19881041 -25026529 - Charlie2 DNA MER1_type -69 2793 2294 2005 176 34 14 chr21 19881041 19881398 -25026172 + THE1B LTR MaLR 1 364 0 10609 111 26 1 chr21 19881398 19882939 -25024631 + THE1B-int LTR MaLR 1 1580 0 1918 174 54 14 chr21 19882939 19883289 -25024281 + THE1B LTR MaLR 1 364 0 1255 256 142 34 chr21 19883289 19883572 -25023998 - Charlie2 DNA MER1_type -567 2295 1856 2326 75 0 13 chr21 19883731 19884036 -25023534 + AluY SINE Alu 1 301 -10 1173 252 83 21 chr21 19886129 19886502 -25021068 - MSTD LTR MaLR 0 396 1 3442 39 0 0 chr21 19888324 19888735 -25018835 - L1PA5 LINE L1 -432 5722 5312 3429 43 7 14 chr21 19888738 19889177 -25018393 + L1PA5 LINE L1 5714 6149 -5 29 28 0 0 chr21 19889842 19889878 -25017692 + AT_rich Low_complexity Low_complexity 1 36 0 3131 105 13 0 chr21 19890083 19890530 -25017040 - MLT2A2 LTR ERVL 0 453 1 2079 194 28 21 chr21 19891068 19891491 -25016079 + Tigger2a DNA MER2_type 8 433 -1 2981 20 0 0 chr21 19891638 19891984 -25015586 - L1PA2 LINE L1 -2 6153 5808 4379 20 0 0 chr21 19891984 19892490 -25015080 + L1P LINE L1 3935 4440 -1706 265 354 28 50 chr21 19894729 19895275 -25012295 + HAL1 LINE L1 1101 1634 -873 200 384 51 14 chr21 19896091 19896229 -25011341 - MIR SINE MIR -117 145 3 23 78 0 0 chr21 19896935 19896986 -25010584 + AT_rich Low_complexity Low_complexity 1 51 0 2428 180 27 14 chr21 19898313 19898796 -25008774 + L1PA16 LINE L1 5676 6164 -2 2273 123 37 0 chr21 19899684 19900034 -25007536 - THE1B LTR MaLR 0 364 2 7835 130 3 0 chr21 19900035 19901185 -25006385 - THE1B-int LTR MaLR 0 1580 427 1573 259 83 49 chr21 19902126 19902682 -25004888 - MLT1E LTR MaLR -1 592 18 2063 151 0 0 chr21 19904300 19904612 -25002958 + AluSq SINE Alu 1 312 -1 277 291 117 10 chr21 19904911 19905014 -25002556 + MER81 DNA DNA 1 114 0 1406 244 32 44 chr21 19905154 19905564 -25002006 - MLT1E2 LTR MaLR 0 626 222 509 213 129 66 chr21 19905574 19905821 -25001749 - MLT1E3 LTR MaLR -275 230 5 1124 294 80 38 chr21 19906009 19906035 -25001535 + L1MCb LINE L1 1 24 -6021 1608 235 82 9 chr21 19906035 19906499 -25001071 - MLT1D LTR MaLR -3 502 5 1124 294 80 38 chr21 19906499 19907000 -25000570 + L1MCb LINE L1 24 550 -5495 636 220 198 18 chr21 19907028 19907255 -25000315 - LOR1a LTR ERV1 -38 459 192 263 197 91 0 chr21 19907252 19907318 -25000252 - LOR1a LTR ERV1 -189 308 237 * 2064 124 0 0 chr21 19907323 19907614 -24999956 - AluSx SINE Alu -17 295 5 1370 263 53 17 chr21 19907813 19908714 -24998856 + L1MCb LINE L1 603 1540 -4851 25 83 0 0 chr21 19908720 19908780 -24998790 + AT_rich Low_complexity Low_complexity 1 60 0 2794 138 0 56 chr21 19908818 19909319 -24998251 - L1PA15 LINE L1 -3 6813 6341 14652 233 19 13 chr21 19909389 19910089 -24997481 - L1PA15 LINE L1 -484 6332 5638 183 42 0 0 chr21 19910089 19910113 -24997457 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 14652 233 19 13 chr21 19910113 19914347 -24993223 - L1PA15 LINE L1 -1178 5638 1357 308 329 136 18 chr21 19914517 19914797 -24992773 + MER110 LTR ERV1 149 461 -30 183 338 14 0 chr21 19915015 19915089 -24992481 + L2 LINE L2 2244 2318 -996 191 275 72 29 chr21 19916107 19916176 -24991394 - L2 LINE L2 0 3313 3242 181 351 75 0 chr21 19916236 19916330 -24991240 + L2 LINE L2 1247 1347 -1967 1907 169 36 28 chr21 19917308 19917669 -24989901 - THE1B LTR MaLR 0 364 1 445 268 20 39 chr21 19917958 19918111 -24989459 - MLT1G LTR MaLR 0 590 441 266 176 0 0 chr21 19918168 19918219 -24989351 - L1MA9 LINE L1 -38 6274 6224 25 0 0 0 chr21 19918654 19918679 -24988891 + AT_rich Low_complexity Low_complexity 1 25 0 1200 302 136 43 chr21 19919420 19920333 -24987237 - L2 LINE L2 -1 3312 2301 26 50 0 0 chr21 19921159 19921199 -24986371 + AT_rich Low_complexity Low_complexity 1 40 0 280 389 51 17 chr21 19922908 19923083 -24984487 - MER5A DNA MER1_type -2 187 7 240 296 71 0 chr21 19923319 19923417 -24984153 - MIR3 SINE MIR -6 202 98 919 158 0 19 chr21 19923728 19923886 -24983684 - AluSg/x SINE Alu -17 292 138 336 259 89 0 chr21 19923887 19923999 -24983571 + MER110 LTR ERV1 359 480 -11 1279 288 98 36 chr21 19924587 19925140 -24982430 + MLT1E LTR MaLR 7 593 0 21 0 0 0 chr21 19925738 19925759 -24981811 + AT_rich Low_complexity Low_complexity 1 21 0 1781 186 66 24 chr21 19926928 19927305 -24980265 + MER57A LTR ERV1 11 403 0 2183 94 0 19 chr21 19927431 19927740 -24979830 - AluSc SINE Alu -6 303 1 2598 51 0 0 chr21 19928021 19928332 -24979238 + AluY SINE Alu 1 311 0 312 325 31 6 chr21 19928543 19928706 -24978864 - MER110A LTR ERV1 -13 455 289 2207 122 3 0 chr21 19929344 19929655 -24977915 - AluSp SINE Alu -1 312 1 187 229 62 0 chr21 19929905 19929953 -24977617 - L2 LINE L2 0 3313 3263 372 346 6 31 chr21 19930349 19930508 -24977062 - MIR3 SINE MIR -23 185 31 556 70 105 0 chr21 19931390 19931476 -24976094 - L1PA8 LINE L1 -14 6158 6064 1771 196 54 48 chr21 19931938 19932401 -24975169 + MER31B LTR ERV1 1 466 0 192 77 0 0 chr21 19932541 19932567 -24975003 + (T)n Simple_repeat Simple_repeat 1 26 0 237 289 70 55 chr21 19932606 19932734 -24974836 + MIR SINE MIR 35 164 -98 247 212 28 56 chr21 19933648 19933827 -24973743 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 * 333 179 9 36 chr21 19933778 19933890 -24973680 + (TA)n Simple_repeat Simple_repeat 1 109 0 2346 90 0 3 chr21 19936054 19936364 -24971206 - AluSc SINE Alu 0 309 1 237 298 48 19 chr21 19936916 19937020 -24970550 + L1MC5 LINE L1 7008 7114 -847 363 82 0 0 chr21 19937021 19937070 -24970500 - Alu SINE Alu -4 296 248 310 237 64 140 chr21 19937075 19937417 -24970153 + L1MC5 LINE L1 7128 7443 -518 4169 48 8 0 chr21 19937428 19937947 -24969623 - L1PA5 LINE L1 -1551 4595 4073 * 7391 37 1 1 chr21 19937941 19939536 -24968034 + L1PA5 LINE L1 4562 6157 0 5529 43 0 1 chr21 19939537 19940249 -24967321 - L1P LINE L1 -2733 3413 2703 4848 41 3 0 chr21 19940249 19940853 -24966717 + L1PA4 LINE L1 5565 6189 0 516 264 101 55 chr21 19940931 19941386 -24966184 + L1MC5 LINE L1 7473 7948 -13 596 231 52 58 chr21 19941539 19941634 -24965936 + MER33 DNA MER1_type 19 113 -2472 788 147 45 6 chr21 19941634 19941811 -24965759 - L1MA7 LINE L1 -2 6289 6106 596 231 52 58 chr21 19941811 19942023 -24965547 + MER33 DNA MER1_type 113 324 0 256 359 35 42 chr21 19945227 19945369 -24962201 + L2 LINE L2 1042 1182 -2132 307 262 134 29 chr21 19945499 19945671 -24961899 - MLT1G1 LTR MaLR -5 537 348 402 309 73 27 chr21 19945795 19946080 -24961490 - MLT1G1 LTR MaLR -314 276 11 258 331 69 54 chr21 19946131 19946481 -24961089 + L2 LINE L2 1353 1707 -1607 259 325 24 40 chr21 19946637 19946763 -24960807 + L2 LINE L2 1881 2004 -1310 21 0 0 0 chr21 19947075 19947096 -24960474 + AT_rich Low_complexity Low_complexity 1 21 0 293 135 11 101 chr21 19948357 19948535 -24959035 + (TA)n Simple_repeat Simple_repeat 1 162 0 * 396 171 59 29 chr21 19948447 19948617 -24958953 + (CTATA)n Simple_repeat Simple_repeat 2 176 0 325 135 21 88 chr21 19948584 19948776 -24958794 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 350 142 136 25 chr21 19948905 19949067 -24958503 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 263 262 149 0 chr21 19949106 19949213 -24958357 - L1MC5 LINE L1 -858 7103 6981 228 145 50 44 chr21 19949385 19949544 -24958026 + (CTATA)n Simple_repeat Simple_repeat 2 161 0 218 149 75 30 chr21 19949544 19949611 -24957959 + (TATAG)n Simple_repeat Simple_repeat 3 72 0 246 231 0 0 chr21 19949644 19949709 -24957861 + (TA)n Simple_repeat Simple_repeat 2 66 0 460 332 39 31 chr21 19950147 19950376 -24957194 + MIR SINE MIR 19 249 -13 1176 179 64 44 chr21 19950579 19950875 -24956695 + MLT1B LTR MaLR 4 305 -85 621 72 0 0 chr21 19951386 19951469 -24956101 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 1401 215 22 0 chr21 19951469 19951743 -24955827 - AluJb SINE Alu -32 280 1 289 265 53 65 chr21 19953256 19953501 -24954069 + L1ME LINE L1 5588 5829 -292 2150 70 0 18 chr21 19953541 19953880 -24953690 - AluY SINE Alu 0 334 1 21 0 0 0 chr21 19953933 19953954 -24953616 + AT_rich Low_complexity Low_complexity 1 21 0 1010 255 31 113 chr21 19953972 19954423 -24953147 + MLT2B1 LTR ERVL 1 427 0 21 57 0 0 chr21 19955220 19955255 -24952315 + AT_rich Low_complexity Low_complexity 1 35 0 189 171 0 0 chr21 19955783 19955818 -24951752 + CT-rich Low_complexity Low_complexity 2 36 0 2229 104 0 3 chr21 19956496 19956803 -24950767 - AluSc SINE Alu -1 308 3 914 176 39 0 chr21 19957042 19957195 -24950375 + Tigger7 DNA MER2_type 1 159 -574 1580 142 0 35 chr21 19957210 19957498 -24950072 + Tigger7 DNA MER2_type 2310 2587 0 24 53 0 0 chr21 19957961 19957999 -24949571 + AT_rich Low_complexity Low_complexity 1 38 0 250 94 0 0 chr21 19958224 19958256 -24949314 + tRNA-Gly-GGG tRNA tRNA 1 32 -42 653 170 128 7 chr21 19958404 19958545 -24949025 - L1PA15 LINE L1 -20 6145 5988 340 292 95 15 chr21 19959225 19959362 -24948208 + LTR50 LTR ERVL 45 192 -603 237 252 57 82 chr21 19959571 19959730 -24947840 + LTR33A LTR ERVL 362 516 -7 235 269 85 23 chr21 19959752 19959882 -24947688 + LTR16C LTR ERVL 352 489 -2 180 0 0 0 chr21 19960135 19960155 -24947415 + (TA)n Simple_repeat Simple_repeat 1 20 0 2067 73 33 4 chr21 19960159 19960475 -24947095 - AluY SINE Alu 0 324 1 25 31 0 0 chr21 19960699 19960731 -24946839 + AT_rich Low_complexity Low_complexity 1 32 0 230 250 0 0 chr21 19962213 19962265 -24945305 - L2 LINE L2 0 3313 3262 210 255 117 96 chr21 19962425 19962519 -24945051 - MIR SINE MIR -83 125 30 668 308 169 29 chr21 19962599 19963221 -24944349 - L2 LINE L2 0 3313 2605 192 152 0 0 chr21 19963579 19963612 -24943958 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 610 223 118 98 chr21 19963618 19963923 -24943647 - MER46C DNA MER2_type -18 320 10 260 234 16 0 chr21 19964020 19964084 -24943486 + LTR53 LTR ERVL 1 65 -454 570 202 9 0 chr21 19965133 19965242 -24942328 + L1MA6 LINE L1 5688 5797 -503 2303 149 64 2 chr21 19965245 19965669 -24941901 + L1MA6 LINE L1 5844 6293 -7 768 251 51 102 chr21 19968038 19968240 -24939330 - MLT1A2 LTR MaLR 0 374 163 249 57 0 0 chr21 19968240 19968275 -24939295 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 768 251 51 102 chr21 19968275 19968335 -24939235 - MLT1A2 LTR MaLR -211 163 101 2208 137 20 6 chr21 19968335 19968692 -24938878 - THE1B LTR MaLR 0 364 3 768 251 51 102 chr21 19968692 19968819 -24938751 - MLT1A2 LTR MaLR -273 101 4 1044 208 10 0 chr21 19969203 19969400 -24938170 - MLT1B LTR MaLR 0 390 192 4049 177 22 15 chr21 19969427 19970228 -24937342 + L1MC1 LINE L1 5527 6333 0 233 348 14 0 chr21 19970968 19971037 -24936533 - L2 LINE L2 0 3272 3203 365 289 111 0 chr21 19971485 19971620 -24935950 - L2 LINE L2 -998 2316 2167 252 0 0 0 chr21 19971787 19971815 -24935755 + (T)n Simple_repeat Simple_repeat 1 28 0 874 331 20 3 chr21 19971826 19972170 -24935400 + LTR16A LTR ERVL 96 445 -5 450 343 52 16 chr21 19972161 19972409 -24935161 - MLT1J LTR MaLR -184 327 71 * 2340 59 0 56 chr21 19973576 19973900 -24933670 - AluY SINE Alu -5 306 1 1368 219 81 55 chr21 19974375 19974867 -24932703 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr21 19975456 19975478 -24932092 + AT_rich Low_complexity Low_complexity 1 22 0 2391 111 14 3 chr21 19975976 19976326 -24931244 + THE1A LTR MaLR 1 354 -1 10524 98 20 39 chr21 19976327 19977937 -24929633 + THE1A-int LTR MaLR 1 1580 0 2563 75 8 30 chr21 19977939 19978240 -24929330 + THE1A LTR MaLR 3 297 -58 1670 109 26 89 chr21 19978240 19978376 -24929194 + AluSx SINE Alu 1 144 -172 2105 92 4 4 chr21 19978376 19978688 -24928882 + AluSg SINE Alu 1 312 0 1670 109 26 89 chr21 19978688 19978885 -24928685 + AluSx SINE Alu 144 316 0 2563 75 8 30 chr21 19978885 19978943 -24928627 + THE1A LTR MaLR 297 355 0 22 70 0 0 chr21 19979158 19979201 -24928369 + AT_rich Low_complexity Low_complexity 1 43 0 2226 95 0 7 chr21 19979373 19979678 -24927892 - AluY SINE Alu -8 303 1 334 259 9 37 chr21 19980638 19980746 -24926824 + CT-rich Low_complexity Low_complexity 4 108 0 22 56 0 0 chr21 19980749 19980785 -24926785 + AT_rich Low_complexity Low_complexity 1 36 0 271 265 0 15 chr21 19982340 19982408 -24925162 + (TAG)n Simple_repeat Simple_repeat 1 67 0 512 291 63 0 chr21 19982458 19982633 -24924937 - MIR SINE MIR -21 241 56 673 259 27 5 chr21 19982732 19982917 -24924653 - MER5A DNA MER1_type 0 189 1 340 236 213 8 chr21 19983781 19983908 -24923662 + MER5B DNA MER1_type 1 153 -25 21 36 0 0 chr21 19984551 19984579 -24922991 + AT_rich Low_complexity Low_complexity 1 28 0 934 235 81 16 chr21 19984765 19985075 -24922495 + MER33 DNA MER1_type 1 323 -1 1194 257 58 96 chr21 19986069 19986590 -24920980 - MLT1D LTR MaLR 0 505 5 1727 139 15 7 chr21 19986849 19987162 -24920408 - AluY SINE Alu 0 321 7 1721 229 25 10 chr21 19987417 19987823 -24919747 - MLT2C2 LTR ERVL -52 412 1 481 216 36 149 chr21 19988512 19988734 -24918836 - MLT1A1 LTR MaLR -2 363 167 201 74 0 0 chr21 19988796 19988823 -24918747 + (A)n Simple_repeat Simple_repeat 1 27 0 850 190 32 6 chr21 19988830 19988988 -24918582 - MLT1A1 LTR MaLR -203 162 1 1120 287 73 61 chr21 19989382 19989877 -24917693 - MLT1E LTR MaLR 0 593 93 447 225 5 118 chr21 19989856 19990043 -24917527 - MLT1E LTR MaLR -427 166 1 * 634 292 82 66 chr21 19992959 19993339 -24914231 + MLT1G1 LTR MaLR 200 585 -10 22 0 0 0 chr21 19993378 19993400 -24914170 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr21 19993616 19993660 -24913910 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 216 86 0 0 chr21 19993818 19993853 -24913717 + (CCCTAA)n Simple_repeat Simple_repeat 5 39 0 420 368 96 11 chr21 19994272 19994552 -24913018 - L2 LINE L2 -423 2891 2588 256 367 40 33 chr21 19994755 19994905 -24912665 + L2 LINE L2 3121 3271 -42 21 57 0 0 chr21 19995241 19995276 -24912294 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 19995890 19995918 -24911652 + AT_rich Low_complexity Low_complexity 1 28 0 1258 41 35 12 chr21 19996503 19996673 -24910897 + L1PA4 LINE L1 5982 6155 0 322 331 54 14 chr21 19996959 19997107 -24910463 - MIR SINE MIR -107 155 2 199 344 112 28 chr21 19997338 19997553 -24910017 + L3b LINE CR1 1108 1340 -243 543 305 76 64 chr21 19998739 19999159 -24908411 - MLT1J2 LTR MaLR -21 429 5 1288 236 61 82 chr21 19999725 20000049 -24907521 + MER67D LTR ERV1 1 311 -203 1572 174 35 0 chr21 20000049 20000336 -24907234 + L1PA16 LINE L1 5861 6157 -9 1288 236 61 82 chr21 20000336 20000532 -24907038 + MER67D LTR ERV1 311 510 -4 346 281 112 29 chr21 20002102 20002344 -24905226 - MER97c DNA MER1_type? -17 1073 812 21 36 0 0 chr21 20002363 20002391 -24905179 + AT_rich Low_complexity Low_complexity 1 28 0 1342 271 78 0 chr21 20003200 20003595 -24903975 - MER97c DNA MER1_type? -635 455 30 1303 42 42 0 chr21 20004286 20004454 -24903116 - L1PA4 LINE L1 0 6155 5981 1574 21 0 0 chr21 20004454 20004640 -24902930 + L1PA4 LINE L1 5794 5979 -176 540 290 47 14 chr21 20004906 20005120 -24902450 + L1MC5 LINE L1 7697 7917 -44 195 129 0 0 chr21 20005238 20005269 -24902301 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 510 91 13 0 chr21 20005753 20005830 -24901740 - MADE1 DNA Mariner -2 78 1 414 0 0 0 chr21 20005948 20005994 -24901576 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 226 140 40 0 chr21 20006004 20006054 -24901516 - L1MC4 LINE L1 -1339 6703 6652 198 191 0 0 chr21 20006393 20006435 -24901135 + (TA)n Simple_repeat Simple_repeat 2 43 0 3279 158 13 48 chr21 20007206 20007729 -24899841 - L1MA2 LINE L1 -9 7714 7218 1838 149 7 7 chr21 20007729 20008037 -24899533 - AluSx SINE Alu -1 311 4 3279 158 13 48 chr21 20008037 20008186 -24899384 - L1MA2 LINE L1 -505 7218 7065 1714 137 14 31 chr21 20008204 20008497 -24899073 - THE1B LTR MaLR -76 288 1 10844 101 31 1 chr21 20008497 20010032 -24897538 - THE1B-int LTR MaLR 0 1580 1 2389 94 33 25 chr21 20010032 20010393 -24897177 - THE1B LTR MaLR 0 364 1 13531 183 40 17 chr21 20010393 20011207 -24896363 - L1MA2 LINE L1 -652 7069 6275 381 22 0 0 chr21 20011207 20011253 -24896317 + (TG)n Simple_repeat Simple_repeat 2 47 0 13531 183 40 17 chr21 20011253 20012532 -24895038 - L1MA2 LINE L1 -1446 6275 5027 1960 144 3 10 chr21 20012532 20012837 -24894733 - AluSx SINE Alu -9 303 1 13531 183 40 17 chr21 20012837 20014059 -24893511 - L1MA2 LINE L1 -2694 5027 3675 2031 206 21 11 chr21 20014061 20014494 -24893076 - L1MA2 LINE L1 -5800 1765 1329 * 2581 210 31 24 chr21 20014461 20015042 -24892528 - L1MA2 LINE L1 -6959 606 22 24 0 0 0 chr21 20015628 20015652 -24891918 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 20016039 20016070 -24891500 + AT_rich Low_complexity Low_complexity 1 31 0 196 327 124 18 chr21 20016211 20016324 -24891246 + MIR3 SINE MIR 33 157 -51 534 320 47 72 chr21 20016600 20016987 -24890583 + L2 LINE L2 808 1184 -2130 279 318 141 26 chr21 20017038 20017230 -24890340 + L2 LINE L2 3097 3310 -3 1818 182 0 3 chr21 20017718 20018031 -24889539 - AluSx SINE Alu 0 312 1 308 254 0 0 chr21 20018129 20018192 -24889378 - MIR SINE MIR -116 146 84 24 0 0 0 chr21 20018571 20018595 -24888975 + AT_rich Low_complexity Low_complexity 1 24 0 287 406 0 0 chr21 20020373 20020506 -24887064 - MER5A DNA MER1_type -56 133 1 1812 91 0 0 chr21 20021000 20021231 -24886339 + AluSc SINE Alu 3 233 -76 2239 112 0 0 chr21 20021242 20021538 -24886032 + AluSc SINE Alu 3 298 -11 2280 68 3 0 chr21 20021538 20021831 -24885739 + AluY SINE Alu 1 294 -17 189 0 0 0 chr21 20022115 20022136 -24885434 + (T)n Simple_repeat Simple_repeat 1 21 0 369 332 33 81 chr21 20022213 20022484 -24885086 - MLT1I LTR MaLR -45 364 107 482 320 43 43 chr21 20022593 20022896 -24884674 - L2 LINE L2 -1103 2211 1909 217 62 0 83 chr21 20024161 20024209 -24883361 + (CTAAT)n Simple_repeat Simple_repeat 1 44 0 1362 148 4 8 chr21 20024366 20024616 -24882954 + L1MA5A LINE L1 6045 6293 -4 22 0 0 0 chr21 20024639 20024661 -24882909 + AT_rich Low_complexity Low_complexity 1 22 0 2235 112 3 0 chr21 20024780 20025092 -24882478 - AluSq SINE Alu 0 313 1 184 328 0 16 chr21 20025475 20025536 -24882034 - L2 LINE L2 -2 3270 3211 1228 250 80 35 chr21 20025750 20026331 -24881239 + MLT2F LTR ERVL 10 661 -2 44 56 0 0 chr21 20027222 20027294 -24880276 + AT_rich Low_complexity Low_complexity 1 72 0 900 263 73 43 chr21 20027356 20027654 -24879916 + L1MC4a LINE L1 5512 5832 -1976 1967 82 15 4 chr21 20027654 20027921 -24879649 + AluY SINE Alu 36 305 -6 900 263 73 43 chr21 20027921 20028112 -24879458 + L1MC4a LINE L1 5832 6016 -1792 994 216 55 156 chr21 20028122 20028636 -24878934 + MLT1C LTR MaLR 6 467 0 986 263 62 66 chr21 20028650 20029213 -24878357 + L1MC4a LINE L1 6058 6618 -1190 31 82 0 0 chr21 20029688 20029761 -24877809 + AT_rich Low_complexity Low_complexity 1 73 0 30 27 0 0 chr21 20030359 20030396 -24877174 + AT_rich Low_complexity Low_complexity 1 37 0 1627 242 60 72 chr21 20030821 20031541 -24876029 + L1ME1 LINE L1 5358 6068 -98 189 74 0 0 chr21 20033144 20033171 -24874399 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr21 20033494 20033516 -24874054 + AT_rich Low_complexity Low_complexity 1 22 0 1761 133 4 0 chr21 20033801 20034049 -24873521 + AluSx SINE Alu 1 249 -63 207 200 0 0 chr21 20034049 20034094 -24873476 + A-rich Low_complexity Low_complexity 1 45 0 2166 129 131 8 chr21 20034239 20034620 -24872950 + MSTA LTR MaLR 1 428 0 192 304 38 25 chr21 20034786 20034865 -24872705 + L3 LINE CR1 858 937 -640 1420 213 3 36 chr21 20035026 20035327 -24872243 + AluJo SINE Alu 9 299 -13 1902 186 43 24 chr21 20036184 20036445 -24871125 + MLT2A2 LTR ERVL 1 255 -299 1840 161 53 28 chr21 20036445 20036800 -24870770 + THE1B LTR MaLR 1 364 0 1902 186 43 24 chr21 20036800 20037088 -24870482 + MLT2A2 LTR ERVL 255 554 0 383 315 122 0 chr21 20038501 20038714 -24868856 + L3b LINE CR1 1103 1341 -242 264 263 40 0 chr21 20039395 20039471 -24868099 - L1MD3 LINE L1 -637 7358 7280 2432 52 0 10 chr21 20039912 20040219 -24867351 + AluY SINE Alu 3 306 -5 26 64 0 0 chr21 20040629 20040676 -24866894 + AT_rich Low_complexity Low_complexity 1 47 0 24 67 0 0 chr21 20040936 20040981 -24866589 + AT_rich Low_complexity Low_complexity 1 45 0 299 216 32 101 chr21 20041564 20041782 -24865788 - Charlie7 DNA MER1_type -9 2603 2401 848 286 170 22 chr21 20041865 20042499 -24865071 - Charlie7 DNA MER1_type -1883 729 2 241 340 20 20 chr21 20043010 20043110 -24864460 - L2 LINE L2 -226 3087 2988 339 316 70 0 chr21 20043151 20043246 -24864324 - L2 LINE L2 -689 2625 2523 405 342 60 39 chr21 20043246 20043480 -24864090 + MIR SINE MIR 3 241 -21 2282 326 147 25 chr21 20043498 20045142 -24862428 - L2 LINE L2 -821 2493 650 22 35 0 0 chr21 20045637 20045666 -24861904 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 20045898 20045926 -24861644 + AT_rich Low_complexity Low_complexity 1 28 0 431 311 30 6 chr21 20046151 20046318 -24861252 + MIR SINE MIR 92 262 0 617 292 120 22 chr21 20046826 20047100 -24860470 - LTR16C LTR ERVL -9 482 182 261 0 0 0 chr21 20047219 20047248 -24860322 + (TG)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr21 20048741 20048772 -24858798 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr21 20048953 20048984 -24858586 + AT_rich Low_complexity Low_complexity 1 31 0 400 162 27 0 chr21 20049299 20049373 -24858197 - AluJ/FRAM SINE Alu -4 298 223 1851 205 99 83 chr21 20050556 20051194 -24856376 - L1MC3 LINE L1 -8 7777 7130 3667 167 34 3 chr21 20051927 20052656 -24854914 + L1MA8 LINE L1 5537 6288 -3 397 326 71 43 chr21 20052883 20053276 -24854294 - MLT1L LTR MaLR -17 598 195 5128 160 26 1 chr21 20053543 20054726 -24852844 - L1PA16 LINE L1 -77 6089 4885 911 152 7 0 chr21 20054726 20054871 -24852699 + Tigger3(Golem) DNA MER2_type 2846 2991 -38 23 0 0 0 chr21 20054895 20054918 -24852652 + AT_rich Low_complexity Low_complexity 1 23 0 549 311 27 31 chr21 20055166 20055388 -24852182 - LTR33 LTR ERVL -298 223 3 2151 114 0 0 chr21 20056330 20056627 -24850943 - AluSg SINE Alu -13 297 1 227 298 25 16 chr21 20056995 20057116 -24850454 - L1MEd LINE L1 -5081 1038 917 21 36 0 0 chr21 20057161 20057189 -24850381 + AT_rich Low_complexity Low_complexity 1 28 0 1126 259 4 8 chr21 20057324 20057575 -24849995 + MLT1A1 LTR MaLR 114 363 -2 22 0 0 0 chr21 20058360 20058382 -24849188 + AT_rich Low_complexity Low_complexity 1 22 0 410 199 157 99 chr21 20058979 20059048 -24848522 - LTR48 LTR ERV1 -7 780 716 3364 158 5 34 chr21 20059048 20059675 -24847895 - MER4B LTR ERV1 -1 609 1 410 199 157 99 chr21 20059675 20059796 -24847774 - LTR48 LTR ERV1 -71 716 579 1076 189 223 42 chr21 20059817 20060198 -24847372 - LTR48 LTR ERV1 -337 450 1 2645 191 61 2 chr21 20060212 20060756 -24846814 + LTR59 LTR ERV1 1 576 -21 344 356 52 29 chr21 20060929 20061235 -24846335 - L3 LINE CR1 -271 1306 994 202 371 134 47 chr21 20061300 20061532 -24846038 - L3 LINE CR1 -1278 299 48 1078 252 143 57 chr21 20061786 20062422 -24845148 + LTR1B LTR ERV1 31 721 -105 303 175 0 18 chr21 20062603 20062660 -24844910 + L1MC4 LINE L1 6648 6703 -1339 301 176 0 0 chr21 20062644 20062695 -24844875 - L1MC4 LINE L1 -1339 6703 6653 * 1426 163 45 120 chr21 20062697 20063072 -24844498 + MER7A DNA MER2_type 1 345 -1 294 29 0 0 chr21 20063072 20063107 -24844463 + (CA)n Simple_repeat Simple_repeat 2 36 0 947 264 108 60 chr21 20063142 20063577 -24843993 - MLT2B1 LTR ERVL -64 456 1 198 103 0 0 chr21 20064189 20064218 -24843352 + (TC)n Simple_repeat Simple_repeat 2 30 0 296 293 40 10 chr21 20064487 20064586 -24842984 + L2 LINE L2 3171 3272 0 1141 227 93 22 chr21 20064883 20065205 -24842365 - MER2 DNA MER2_type 0 345 1 1613 222 45 82 chr21 20065348 20066052 -24841518 - L1MEc LINE L1 -1454 4761 4084 691 211 0 7 chr21 20066064 20066206 -24841364 - MLT1D LTR MaLR 0 505 365 * 1602 196 11 21 chr21 20066202 20066555 -24841015 - MER21B LTR ERV1 -459 404 8 664 304 119 10 chr21 20066566 20066970 -24840600 - L1MEc LINE L1 -2275 3940 3493 1801 180 38 24 chr21 20067052 20067425 -24840145 - MER65A LTR ERV1 -28 417 40 986 127 6 0 chr21 20067475 20067632 -24839938 - L1PB1 LINE L1 0 6151 5994 2122 262 92 23 chr21 20067698 20069024 -24838546 - L1MEc LINE L1 -2845 3370 1967 276 176 39 0 chr21 20069024 20069075 -24838495 - MER6B DNA MER2_type 0 210 158 4273 22 2 0 chr21 20069075 20069575 -24837995 - L1PA3 LINE L1 -1147 4999 4499 7551 31 0 1 chr21 20069575 20070747 -24836823 + L1PA3 LINE L1 4985 6155 0 673 241 0 29 chr21 20070750 20070920 -24836650 + MER6B DNA MER2_type 46 210 0 2318 171 21 23 chr21 20070978 20071412 -24836158 - Tigger2a DNA MER2_type 0 434 2 257 151 19 0 chr21 20071418 20071471 -24836099 + (TG)n Simple_repeat Simple_repeat 1 54 0 688 262 103 28 chr21 20071487 20071777 -24835793 - L1MEc LINE L1 -4470 1926 1615 263 288 44 12 chr21 20072192 20072352 -24835218 - L1MEc LINE L1 -5011 1194 1030 254 222 16 0 chr21 20072357 20072420 -24835150 + (TA)n Simple_repeat Simple_repeat 2 65 0 2265 104 0 3 chr21 20072412 20072743 -24834827 - AluSc SINE Alu 0 330 1 2332 168 36 19 chr21 20073219 20073695 -24833875 - L1MA4 LINE L1 -114 6186 5703 269 157 0 0 chr21 20073701 20073752 -24833818 - L1MA4 LINE L1 -659 5644 5594 21 0 0 0 chr21 20073922 20073943 -24833627 + AT_rich Low_complexity Low_complexity 1 21 0 1522 201 38 0 chr21 20074069 20074382 -24833188 + L1MC3 LINE L1 7198 7522 -263 23 33 0 0 chr21 20074486 20074516 -24833054 + AT_rich Low_complexity Low_complexity 1 30 0 1770 159 3 7 chr21 20074595 20074884 -24832686 - AluSx SINE Alu -24 288 1 4234 117 147 14 chr21 20076135 20076863 -24830707 + LTR12 LTR ERV1 1 825 -1 818 132 16 0 chr21 20076864 20076993 -24830577 + LTR12 LTR ERV1 584 714 0 204 322 53 63 chr21 20077350 20077651 -24829919 + L2 LINE L2 2953 3250 -63 263 333 76 23 chr21 20078058 20078229 -24829341 - Charlie8 DNA MER1_type -2227 190 11 1109 194 32 14 chr21 20078642 20078859 -24828711 - AluJo SINE Alu -91 221 1 1571 190 14 11 chr21 20078859 20079212 -24828358 - L1MA4 LINE L1 -815 5331 4978 328 274 68 27 chr21 20079222 20079368 -24828202 - L1M2a LINE L1 -5429 1739 1588 414 85 0 0 chr21 20080185 20080244 -24827326 + (TG)n Simple_repeat Simple_repeat 2 60 0 317 332 136 5 chr21 20080421 20080635 -24826935 - MIR SINE MIR -5 257 16 190 280 32 65 chr21 20083633 20083726 -24823844 - MIR SINE MIR -46 216 127 417 292 143 6 chr21 20083783 20083944 -24823626 + MER5A DNA MER1_type 7 189 0 1924 247 29 11 chr21 20084288 20084737 -24822833 - MER70B LTR ERVL -121 457 1 204 40 0 0 chr21 20084746 20084771 -24822799 + (CA)n Simple_repeat Simple_repeat 2 26 0 2081 104 0 0 chr21 20085035 20085340 -24822230 + AluSg1 SINE Alu 2 306 0 2210 108 0 0 chr21 20085899 20086204 -24821366 + AluSg SINE Alu 1 305 -5 3105 183 34 9 chr21 20086834 20087489 -24820081 - L1PA13 LINE L1 -756 5390 4720 4680 130 39 0 chr21 20087498 20088246 -24819324 + L1PA13 LINE L1 5385 6161 -2 2061 95 23 0 chr21 20088276 20088581 -24818989 + L1PA13 LINE L1 5845 6156 -7 235 298 0 0 chr21 20089537 20089594 -24817976 + MER5A DNA MER1_type 63 119 -70 837 120 8 41 chr21 20090189 20090436 -24817134 + (GAAA)n Simple_repeat Simple_repeat 1 238 0 23 0 0 0 chr21 20091391 20091414 -24816156 + AT_rich Low_complexity Low_complexity 1 23 0 1364 306 94 34 chr21 20092853 20093839 -24813731 - L2 LINE L2 -1 3312 2256 197 356 0 0 chr21 20094612 20094671 -24812899 - L2 LINE L2 -1 3271 3213 422 267 40 0 chr21 20094672 20094773 -24812797 + Charlie1 DNA MER1_type 2 106 -2655 2252 44 0 11 chr21 20094773 20095043 -24812527 + AluY SINE Alu 13 279 -32 360 0 0 0 chr21 20095043 20095083 -24812487 + (CAA)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr21 20095198 20095219 -24812351 + AT_rich Low_complexity Low_complexity 1 21 0 334 315 8 16 chr21 20096512 20096639 -24810931 + (CATA)n Simple_repeat Simple_repeat 2 127 0 23 54 0 0 chr21 20096697 20096734 -24810836 + AT_rich Low_complexity Low_complexity 1 37 0 491 325 124 43 chr21 20096810 20097114 -24810456 - LTR67 LTR ERVL -47 510 153 1356 222 52 44 chr21 20097114 20097501 -24810069 - MLT1B LTR MaLR 0 390 1 491 325 124 43 chr21 20097501 20097664 -24809906 - LTR67 LTR ERVL -404 153 5 8759 157 17 84 chr21 20098378 20099307 -24808263 - L1MA3 LINE L1 -3 7721 6731 2107 103 0 23 chr21 20099307 20099609 -24807961 - AluSx SINE Alu -17 295 1 8759 157 17 84 chr21 20099609 20102113 -24805457 - L1MA3 LINE L1 -993 6731 4524 4628 141 26 41 chr21 20102115 20102487 -24805083 - L1MA3 LINE L1 -3783 3782 3406 270 0 0 0 chr21 20102487 20102517 -24805053 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1759 187 0 0 chr21 20102524 20102808 -24804762 - AluJo SINE Alu -26 286 3 4628 141 26 41 chr21 20102808 20103458 -24804112 - L1MA3 LINE L1 -4165 3400 2764 * 7070 200 35 14 chr21 20103446 20104968 -24802602 - L1MA3 LINE L1 -5683 1882 11 2164 100 0 0 chr21 20104988 20105313 -24802257 + AluY SINE Alu 1 325 0 307 294 96 32 chr21 20105890 20106077 -24801493 - MER63A DNA MER1_type -6 204 6 2452 94 28 3 chr21 20107415 20107776 -24799794 + L1PA13 LINE L1 5784 6153 -10 931 166 166 5 chr21 20107814 20108037 -24799533 - L1MB1 LINE L1 -574 5597 5339 * 2897 182 31 0 chr21 20108033 20108577 -24798993 + L1MB1 LINE L1 5611 6171 -18 21 36 0 0 chr21 20108781 20108809 -24798761 + AT_rich Low_complexity Low_complexity 1 28 0 2121 103 0 45 chr21 20109372 20109682 -24797888 + AluSg SINE Alu 1 296 -14 279 295 48 19 chr21 20110670 20110775 -24796795 - L2 LINE L2 -5 3308 3201 624 227 91 45 chr21 20112548 20112746 -24794824 + MER58C DNA MER1_type 9 215 0 21 36 0 0 chr21 20113810 20113838 -24793732 + AT_rich Low_complexity Low_complexity 1 28 0 457 336 19 24 chr21 20115340 20115551 -24792019 + MIR SINE MIR 53 262 0 2085 130 0 3 chr21 20116196 20116503 -24791067 - AluSg SINE Alu -4 306 1 360 282 9 9 chr21 20117748 20117858 -24789712 - MIR SINE MIR -74 188 79 327 282 145 24 chr21 20118364 20118488 -24789082 - MIR SINE MIR -103 159 21 225 88 0 0 chr21 20120124 20120158 -24787412 + L1M1 LINE L1 5529 5562 -741 10465 212 37 58 chr21 20120181 20120747 -24786823 - L1M1 LINE L1 -743 6105 5529 1776 72 0 56 chr21 20120747 20120998 -24786572 - AluSg SINE Alu -10 300 64 10465 212 37 58 chr21 20120998 20121177 -24786393 - L1M1 LINE L1 -1319 5529 5348 967 106 0 0 chr21 20121177 20121309 -24786261 - AluY SINE Alu -9 302 171 10465 212 37 58 chr21 20121309 20124863 -24782707 - L1M1 LINE L1 -1500 5348 1883 1729 191 16 24 chr21 20124863 20125241 -24782329 - THE1C LTR MaLR 0 375 1 7762 149 48 9 chr21 20125241 20126539 -24781031 - THE1C-int LTR MaLR 0 1580 233 2336 159 62 15 chr21 20126541 20126825 -24780745 - L1M3 LINE L1 -429 5739 5470 2006 200 76 18 chr21 20126825 20126960 -24780610 + MER70A LTR ERVL 1 127 -345 2510 72 0 0 chr21 20126960 20127264 -24780306 - AluY SINE Alu -7 304 1 2006 200 76 18 chr21 20127264 20127574 -24779996 + MER70A LTR ERVL 127 472 0 2336 159 62 15 chr21 20127574 20127826 -24779744 - L1M3 LINE L1 -698 5470 5180 41 36 0 0 chr21 20127930 20127985 -24779585 + AT_rich Low_complexity Low_complexity 1 55 0 320 291 92 23 chr21 20128018 20128103 -24779467 - L1M4 LINE L1 -3389 2757 2679 2435 78 0 3 chr21 20128103 20128409 -24779161 - AluY SINE Alu -6 305 1 320 291 92 23 chr21 20128409 20128584 -24778986 - L1M4 LINE L1 -3467 2679 2479 2782 185 49 6 chr21 20129445 20129938 -24777632 + MLT2B3 LTR ERVL 1 520 -34 663 58 39 0 chr21 20129938 20130042 -24777528 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 2782 185 49 6 chr21 20130042 20130079 -24777491 + MLT2B3 LTR ERVL 520 554 0 886 183 91 164 chr21 20130613 20130693 -24776877 - MSTB2 LTR MaLR 0 457 373 1919 129 0 57 chr21 20130693 20131010 -24776560 + AluY SINE Alu 1 299 -12 2506 71 0 3 chr21 20131010 20131321 -24776249 + AluY SINE Alu 1 310 -1 886 183 91 164 chr21 20131321 20131667 -24775903 - MSTB2 LTR MaLR -83 374 68 1854 118 4 4 chr21 20131667 20131937 -24775633 - AluSx SINE Alu -9 303 34 886 183 91 164 chr21 20131937 20132001 -24775569 - MSTB2 LTR MaLR -389 68 1 27 0 0 0 chr21 20132012 20132039 -24775531 + AT_rich Low_complexity Low_complexity 1 27 0 1542 179 10 19 chr21 20132304 20132616 -24774954 + AluSx SINE Alu 1 309 -3 280 241 17 0 chr21 20132883 20132941 -24774629 + AluYb8 SINE Alu 133 191 -117 551 239 17 0 chr21 20133052 20133169 -24774401 + AluJ SINE Alu 1 119 -193 191 130 43 14 chr21 20133169 20133238 -24774332 + (TA)n Simple_repeat Simple_repeat 2 72 0 695 205 133 24 chr21 20133238 20133404 -24774166 + AluJ SINE Alu 125 308 -4 2641 173 11 34 chr21 20133404 20134021 -24773549 + pTR5 LTR ERV1 743 1345 -1093 4094 125 17 127 chr21 20134036 20134959 -24772611 + LTR12 LTR ERV1 5 826 0 520 84 0 69 chr21 20134965 20135096 -24772474 + (GGGA)n Simple_repeat Simple_repeat 4 125 0 23 33 0 0 chr21 20135671 20135701 -24771869 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr21 20136390 20136424 -24771146 + AT_rich Low_complexity Low_complexity 1 34 0 770 276 40 0 chr21 20138307 20138481 -24769089 - MER5A DNA MER1_type 0 189 9 260 273 40 30 chr21 20138664 20138763 -24768807 + MLT2F LTR ERVL 1 100 -563 21 36 0 0 chr21 20138814 20138842 -24768728 + AT_rich Low_complexity Low_complexity 1 28 0 2160 169 56 29 chr21 20138942 20139387 -24768183 + LOR1b LTR ERV1 1 457 -4 22 56 0 0 chr21 20139401 20139437 -24768133 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr21 20140267 20140291 -24767279 + (CA)n Simple_repeat Simple_repeat 2 25 0 1169 205 35 57 chr21 20140450 20140654 -24766916 + AluJo SINE Alu 1 208 -104 4116 122 107 76 chr21 20140654 20141455 -24766115 - LTR12 LTR ERV1 0 826 1 1169 205 35 57 chr21 20141455 20141496 -24766074 + AluJo SINE Alu 208 248 -64 3459 163 90 42 chr21 20141496 20142281 -24765289 - LTR1B LTR ERV1 0 826 4 1169 205 35 57 chr21 20142281 20142351 -24765219 + AluJo SINE Alu 248 310 -2 396 0 0 0 chr21 20143670 20143714 -24763856 + (CA)n Simple_repeat Simple_repeat 1 44 0 2475 152 70 2 chr21 20143728 20144182 -24763388 + MER31A LTR ERV1 1 485 0 198 328 60 52 chr21 20144554 20144688 -24762882 - L2 LINE L2 -10 3303 3169 2152 107 0 7 chr21 20145074 20145373 -24762197 - AluSq SINE Alu -10 303 7 2268 91 0 3 chr21 20146180 20146489 -24761081 + AluY SINE Alu 1 308 -3 21 0 0 0 chr21 20147487 20147508 -24760062 + AT_rich Low_complexity Low_complexity 1 21 0 1034 129 24 0 chr21 20149035 20149205 -24758365 + L1M1 LINE L1 5424 5597 -708 767 252 41 12 chr21 20149324 20149559 -24758011 - MER76 LTR ERV 0 688 447 953 129 8 163 chr21 20149559 20149799 -24757771 + MER67B LTR ERV1 1 203 -458 1427 244 47 3 chr21 20149847 20150187 -24757383 - MLT1A1 LTR MaLR -8 357 3 429 224 42 28 chr21 20150190 20150360 -24757210 + MER67C LTR ERV1 204 393 -268 1770 123 117 23 chr21 20150663 20151005 -24756565 + THE1C LTR MaLR 2 375 0 201 121 0 0 chr21 20151554 20151587 -24755983 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 229 351 70 27 chr21 20153137 20153436 -24754134 + L1ME LINE L1 55 366 -6030 1494 280 96 18 chr21 20153767 20154877 -24752693 + L1ME LINE L1 2373 3568 -2647 280 257 257 0 chr21 20154948 20155096 -24752474 - L1MDa LINE L1 -4247 2293 2108 1243 239 76 36 chr21 20155132 20155525 -24752045 + MLT1C LTR MaLR 59 467 0 2961 209 57 5 chr21 20155528 20156175 -24751395 + MLT1C-int LTR MaLR 4 684 -687 3457 243 111 61 chr21 20156225 20157536 -24750034 - L1MDa LINE L1 -5020 1523 148 683 282 59 8 chr21 20157553 20157908 -24749662 + L1ME LINE L1 3616 3988 -2227 25 99 0 0 chr21 20158334 20158415 -24749155 + AT_rich Low_complexity Low_complexity 1 81 0 211 152 261 0 chr21 20158455 20158501 -24749069 - L2 LINE L2 -12 3260 3203 1680 131 14 165 chr21 20159001 20159522 -24748048 + Tigger2a DNA MER2_type 1 443 -1 309 264 22 101 chr21 20159542 20159681 -24747889 + L1ME LINE L1 5537 5664 -526 377 20 0 20 chr21 20159947 20159998 -24747572 + (TA)n Simple_repeat Simple_repeat 2 51 0 216 0 0 0 chr21 20160023 20160047 -24747523 + (CA)n Simple_repeat Simple_repeat 2 25 0 234 291 82 36 chr21 20160502 20160612 -24746958 + MIR SINE MIR 72 186 -76 297 51 0 0 chr21 20162010 20162049 -24745521 + (TG)n Simple_repeat Simple_repeat 1 39 0 2102 97 0 56 chr21 20162351 20162670 -24744900 + AluSg SINE Alu 1 301 -9 217 39 96 19 chr21 20162671 20162723 -24744847 + (TA)n Simple_repeat Simple_repeat 2 57 0 252 0 0 0 chr21 20162723 20162751 -24744819 + (GA)n Simple_repeat Simple_repeat 2 29 0 239 303 22 22 chr21 20163030 20163119 -24744451 + MIR3 SINE MIR 111 199 -9 21 0 0 0 chr21 20163150 20163171 -24744399 + AT_rich Low_complexity Low_complexity 1 21 0 1706 187 18 3 chr21 20163739 20164071 -24743499 - MER44D DNA MER2_type -1 608 2 213 250 0 34 chr21 20164298 20164386 -24743184 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 2451 171 21 5 chr21 20164440 20164861 -24742709 + MSTA LTR MaLR 1 428 0 1832 197 19 6 chr21 20165064 20165424 -24742146 + MLT1A1 LTR MaLR 1 365 0 360 0 0 0 chr21 20166053 20166093 -24741477 + (TA)n Simple_repeat Simple_repeat 1 40 0 1312 204 14 6 chr21 20166315 20166672 -24740898 + L1 LINE L1 3092 3451 -2695 3738 136 34 57 chr21 20166672 20167425 -24740145 + L1PB4 LINE L1 5415 6155 -1 613 205 0 0 chr21 20167494 20167606 -24739964 + FLAM_C SINE Alu 22 133 -10 1170 234 50 39 chr21 20167608 20167989 -24739581 + MLT1C LTR MaLR 83 467 0 23 0 0 0 chr21 20168482 20168505 -24739065 + AT_rich Low_complexity Low_complexity 1 23 0 1227 283 115 20 chr21 20170124 20170612 -24736958 + MER34 LTR ERV1 9 542 0 1707 159 87 7 chr21 20170697 20171006 -24736564 - MER7A DNA MER2_type 0 346 15 841 329 81 41 chr21 20171102 20171332 -24736238 - L2 LINE L2 -15 3298 3079 255 31 0 0 chr21 20171332 20171364 -24736206 + (TGG)n Simple_repeat Simple_repeat 2 33 0 841 329 81 41 chr21 20171364 20171855 -24735715 - L2 LINE L2 -234 3079 2545 23 78 0 0 chr21 20172044 20172095 -24735475 + AT_rich Low_complexity Low_complexity 1 51 0 28 61 0 0 chr21 20172225 20172274 -24735296 + AT_rich Low_complexity Low_complexity 1 49 0 611 277 105 6 chr21 20172376 20172737 -24734833 + MER114 LTR ERV 18 414 -234 2170 94 14 14 chr21 20173236 20173568 -24734002 - AluSq SINE Alu 0 313 1 1743 78 0 0 chr21 20174124 20174341 -24733229 + AluY SINE Alu 1 217 -94 1091 85 7 0 chr21 20174343 20174484 -24733086 + AluY SINE Alu 76 217 -94 23 33 0 0 chr21 20174920 20174950 -24732620 + AT_rich Low_complexity Low_complexity 1 30 0 2109 77 32 42 chr21 20175553 20175864 -24731706 - AluY SINE Alu -2 309 2 32 0 0 0 chr21 20177024 20177056 -24730514 + AT_rich Low_complexity Low_complexity 1 32 0 32 43 0 0 chr21 20177150 20177196 -24730374 + AT_rich Low_complexity Low_complexity 1 46 0 754 311 60 18 chr21 20177498 20177832 -24729738 - MLT1J LTR MaLR -105 406 59 1431 197 18 25 chr21 20178202 20178486 -24729084 + AluJo SINE Alu 1 282 -30 3033 35 0 3 chr21 20178530 20178899 -24728671 - L1PA4 LINE L1 -4 6151 5784 1354 273 85 56 chr21 20178969 20179545 -24728025 + MLT1E LTR MaLR 1 593 0 208 338 42 0 chr21 20179681 20179752 -24727818 + MIR SINE MIR 109 182 -80 316 350 168 5 chr21 20179780 20179983 -24727587 - MIR SINE MIR 0 262 27 664 283 145 60 chr21 20180098 20180518 -24727052 - L2 LINE L2 -1195 2119 1664 2512 222 19 41 chr21 20180520 20180748 -24726822 - MLT2B3 LTR ERVL -3 551 320 916 234 93 62 chr21 20180748 20181102 -24726468 + MLT1A1 LTR MaLR 1 365 0 2512 222 19 41 chr21 20181102 20181436 -24726134 - MLT2B3 LTR ERVL -234 320 1 2117 321 89 17 chr21 20181447 20181867 -24725703 - L2 LINE L2 -1657 1657 1269 2291 63 0 7 chr21 20181867 20182195 -24725375 - AluY SINE Alu 0 326 1 2117 321 89 17 chr21 20182195 20182788 -24724782 - L2 LINE L2 -2045 1269 570 433 281 22 58 chr21 20182842 20182981 -24724589 + MER5A DNA MER1_type 56 189 0 401 310 39 0 chr21 20183106 20183235 -24724335 - L2 LINE L2 -2758 556 423 547 271 54 12 chr21 20183267 20183433 -24724137 - MIR SINE MIR -15 247 75 233 336 9 35 chr21 20183905 20184018 -24723552 + L2 LINE L2 2654 2763 -551 201 229 0 0 chr21 20184093 20184141 -24723429 + CT-rich Low_complexity Low_complexity 2 49 0 442 327 64 9 chr21 20184151 20184371 -24723199 + MLT1J1 LTR MaLR 37 268 -178 244 341 35 77 chr21 20184550 20184720 -24722850 + L2 LINE L2 3072 3234 -38 563 289 147 17 chr21 20185628 20185974 -24721596 + MER20B DNA MER1_type 63 453 -330 372 162 108 27 chr21 20185971 20186082 -24721488 + MER20B DNA MER1_type 608 727 -56 * 738 222 18 18 chr21 20186100 20186267 -24721303 - MER63 DNA MER1_type -217 844 678 2314 42 14 0 chr21 20186960 20187243 -24720327 + AluY SINE Alu 1 287 -24 1732 138 164 0 chr21 20187423 20187734 -24719836 + THE1B LTR MaLR 1 362 -2 26 0 0 0 chr21 20187764 20187790 -24719780 + AT_rich Low_complexity Low_complexity 1 26 0 204 171 24 0 chr21 20188262 20188303 -24719267 + A-rich Low_complexity Low_complexity 4 45 0 249 33 0 0 chr21 20188490 20188520 -24719050 + (TA)n Simple_repeat Simple_repeat 2 31 0 754 337 63 40 chr21 20189880 20190325 -24717245 - L2 LINE L2 -1 3312 2858 1560 122 12 4 chr21 20190620 20190867 -24716703 + L1PB1 LINE L1 5902 6150 -1 21 0 0 0 chr21 20190867 20190888 -24716682 + AT_rich Low_complexity Low_complexity 1 21 0 4431 187 36 25 chr21 20190937 20192299 -24715271 - L1MA4 LINE L1 -5 6295 4910 2636 146 42 15 chr21 20192300 20192982 -24714588 - L1P4 LINE L1 -440 5725 5026 21 36 0 0 chr21 20193118 20193146 -24714424 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 0 chr21 20194048 20194333 -24713237 + AluSc SINE Alu 9 295 -14 464 196 59 10 chr21 20195278 20195380 -24712190 - MER70A LTR ERVL -275 197 91 * 674 289 6 6 chr21 20195365 20195538 -24712032 - MER70A LTR ERVL -299 173 1 1291 153 55 89 chr21 20195538 20195742 -24711828 + L1MA7 LINE L1 5957 6146 -145 2730 50 3 0 chr21 20195742 20196081 -24711489 - LTR14A LTR ERVK -4 340 1 1291 153 55 89 chr21 20196081 20196223 -24711347 + L1MA7 LINE L1 6146 6291 0 213 356 46 0 chr21 20196393 20196480 -24711090 - L2 LINE L2 -211 3061 2971 315 34 9 4 chr21 20196722 20196768 -24710802 - L1P4 LINE L1 -496 5670 5624 405 189 53 0 chr21 20196768 20196863 -24710707 + L1PA15 LINE L1 6053 6152 -13 204 67 0 0 chr21 20196890 20196920 -24710650 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 270 333 52 0 chr21 20197359 20197455 -24710115 - LTR33A LTR ERVL -364 159 59 613 359 43 26 chr21 20197805 20198153 -24709417 - LTR16C LTR ERVL 0 491 138 1228 278 72 29 chr21 20198376 20198794 -24708776 + L1MEc LINE L1 38 473 -5923 686 358 34 7 chr21 20198826 20199122 -24708448 - ERVL LTR ERVL -3402 2362 2059 272 394 40 17 chr21 20199655 20200008 -24707562 - ERVL LTR ERVL -3698 1298 938 1732 158 45 3 chr21 20201517 20201809 -24705761 - AluSx SINE Alu -8 304 1 192 40 0 0 chr21 20203187 20203212 -24704358 + (T)n Simple_repeat Simple_repeat 1 25 0 320 307 47 21 chr21 20203840 20204032 -24703538 - L1MC5 LINE L1 -36 7925 7729 24 0 0 0 chr21 20204983 20205007 -24702563 + AT_rich Low_complexity Low_complexity 1 24 0 203 176 0 0 chr21 20205386 20205420 -24702150 + T-rich Low_complexity Low_complexity 2 35 0 465 280 28 23 chr21 20205615 20205829 -24701741 + L1MC4 LINE L1 7708 7922 -120 25 31 0 0 chr21 20205932 20205964 -24701606 + AT_rich Low_complexity Low_complexity 1 32 0 1700 156 140 29 chr21 20206472 20206857 -24700713 - MSTA LTR MaLR 0 428 1 2536 89 20 0 chr21 20207031 20207378 -24700192 - THE1A LTR MaLR -1 354 1 25 51 0 0 chr21 20208427 20208466 -24699104 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr21 20208704 20208725 -24698845 + AT_rich Low_complexity Low_complexity 1 21 0 402 153 0 24 chr21 20208810 20208895 -24698675 - MLT1A1-int LTR MaLR -1651 84 2 1541 186 24 61 chr21 20208897 20209273 -24698297 - MLT1A1 LTR MaLR -1 364 3 1443 157 50 8 chr21 20209527 20209820 -24697750 - AluJb SINE Alu 0 314 11 379 88 55 11 chr21 20211597 20211688 -24695882 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 2398 86 0 0 chr21 20212070 20212374 -24695196 - AluSx SINE Alu -7 305 2 466 277 26 73 chr21 20213138 20213372 -24694198 + MIR SINE MIR 21 246 -16 272 258 75 83 chr21 20213448 20213470 -24694100 - MIR SINE MIR -140 122 101 2177 116 7 0 chr21 20213470 20213772 -24693798 + AluSg SINE Alu 1 304 -6 272 258 75 83 chr21 20213772 20213869 -24693701 - MIR SINE MIR -161 101 4 6594 75 12 2 chr21 20214090 20215074 -24692496 + L1PA7 LINE L1 5159 6151 -3 3330 150 36 8 chr21 20215208 20215821 -24691749 - L1MA4A LINE L1 -9 6294 5665 2131 186 37 8 chr21 20215821 20216432 -24691138 + L1P LINE L1 4798 5425 -726 2507 61 0 3 chr21 20216762 20217074 -24690496 + AluY SINE Alu 1 311 0 228 135 0 0 chr21 20217365 20217402 -24690168 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 333 0 0 0 chr21 20217798 20217835 -24689735 + (TA)n Simple_repeat Simple_repeat 2 38 0 255 61 0 0 chr21 20219050 20219083 -24688487 + (TG)n Simple_repeat Simple_repeat 2 34 0 2190 91 0 7 chr21 20219162 20219478 -24688092 + AluY SINE Alu 1 314 0 29 47 0 0 chr21 20219719 20219762 -24687808 + AT_rich Low_complexity Low_complexity 1 43 0 387 297 144 45 chr21 20220324 20220768 -24686802 + L1MEc LINE L1 1577 2064 -4332 8107 178 42 13 chr21 20220773 20222278 -24685292 + Tigger2 DNA MER2_type 1169 2718 0 180 334 105 65 chr21 20222830 20223201 -24684369 - L2 LINE L2 -777 2537 2152 357 24 0 0 chr21 20225971 20226013 -24681557 + (TG)n Simple_repeat Simple_repeat 1 42 0 1871 121 0 48 chr21 20226013 20226302 -24681268 - AluSx SINE Alu -30 282 8 25 0 0 0 chr21 20226308 20226333 -24681237 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 20226636 20226658 -24680912 + AT_rich Low_complexity Low_complexity 1 22 0 10815 174 116 9 chr21 20227211 20228580 -24678990 - L1M1 LINE L1 -4362 3203 1982 363 44 0 0 chr21 20228580 20228625 -24678945 + (TC)n Simple_repeat Simple_repeat 2 46 0 10815 174 116 9 chr21 20228625 20229547 -24678023 - L1M1 LINE L1 -5583 1982 9 645 230 61 0 chr21 20229583 20229796 -24677774 - L1MA7 LINE L1 -5 6286 6061 232 217 33 0 chr21 20230075 20230135 -24677435 + MER5C DNA MER1_type 108 169 -155 1489 81 25 0 chr21 20230144 20230341 -24677229 + AluY SINE Alu 1 202 -109 454 48 0 0 chr21 20230344 20230406 -24677164 + AluY SINE Alu 236 297 -13 289 294 89 14 chr21 20230409 20230555 -24677015 + MER5C DNA MER1_type 168 324 0 2419 83 41 0 chr21 20230862 20231201 -24676369 - THE1A LTR MaLR 0 355 3 10994 104 5 19 chr21 20231203 20232235 -24675335 - THE1A-int LTR MaLR 0 1580 578 2238 104 0 0 chr21 20232235 20232534 -24675036 + AluY SINE Alu 1 299 -12 10994 104 5 19 chr21 20232534 20233103 -24674467 - THE1A-int LTR MaLR -1002 578 2 2630 80 17 0 chr21 20233104 20233453 -24674117 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr21 20233787 20233809 -24673761 + AT_rich Low_complexity Low_complexity 1 22 0 290 131 0 0 chr21 20233809 20233867 -24673703 - Alu SINE Alu -262 39 1 1626 151 32 4 chr21 20233937 20234215 -24673355 + AluSx SINE Alu 21 306 -6 3353 106 32 0 chr21 20234917 20235415 -24672155 + MER75 DNA T2_type 1 514 0 256 306 54 18 chr21 20235515 20235626 -24671944 - MIR SINE MIR 0 262 148 652 288 26 66 chr21 20235877 20236148 -24671422 + MIR SINE MIR 3 262 0 1141 176 41 5 chr21 20236926 20237147 -24670423 + MLT1B LTR MaLR 27 255 -135 658 245 90 103 chr21 20237209 20237576 -24669994 - MLT1A1 LTR MaLR 0 365 4 6110 233 40 52 chr21 20237579 20238710 -24668860 - MLT1A1-int LTR MaLR 0 1735 631 2355 87 0 10 chr21 20238710 20239019 -24668551 + AluY SINE Alu 1 306 -5 6110 233 40 52 chr21 20239019 20239640 -24667930 - MLT1A1-int LTR MaLR -1104 631 4 255 217 17 0 chr21 20239643 20239703 -24667867 - MLT1A1 LTR MaLR 0 457 397 225 65 0 0 chr21 20239974 20240005 -24667565 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 34 24 0 0 chr21 20242600 20242641 -24664929 + AT_rich Low_complexity Low_complexity 1 41 0 2243 85 22 77 chr21 20242652 20243016 -24664554 - MLT2A1 LTR ERVL 0 444 101 720 149 126 11 chr21 20243016 20243055 -24664515 - Ricksha DNA DNA -2858 388 330 40744 76 13 9 chr21 20243055 20246698 -24660872 - HERVL-A1-A1 LTR ERVL 0 5654 1985 1953 110 24 0 chr21 20246698 20246988 -24660582 + AluSq SINE Alu 13 309 -4 40744 76 13 9 chr21 20246988 20248980 -24658590 - HERVL-A1-A1 LTR ERVL -3669 1985 1 3005 78 45 5 chr21 20248982 20249407 -24658163 - MLT2A1 LTR ERVL -2 442 1 306 50 0 0 chr21 20249718 20249758 -24657812 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr21 20249849 20249878 -24657692 + AT_rich Low_complexity Low_complexity 1 29 0 244 355 0 0 chr21 20250128 20250204 -24657366 + MIR3 SINE MIR 127 202 -6 21 0 0 0 chr21 20250812 20250833 -24656737 + AT_rich Low_complexity Low_complexity 1 21 0 298 145 14 14 chr21 20251240 20251309 -24656261 + GA-rich Low_complexity Low_complexity 4 72 0 1699 266 17 29 chr21 20251379 20251897 -24655673 - LTR40a LTR ERVL -2 517 6 26 0 0 0 chr21 20252099 20252125 -24655445 + AT_rich Low_complexity Low_complexity 1 26 0 265 259 22 22 chr21 20252725 20252860 -24654710 + (TA)n Simple_repeat Simple_repeat 2 136 0 2303 110 30 0 chr21 20254934 20255270 -24652300 - L1PA13 LINE L1 -217 5946 5601 1431 99 28 0 chr21 20255271 20255482 -24652088 + L1PA13 LINE L1 5947 6163 0 333 324 93 67 chr21 20255548 20255891 -24651679 + HAL1 LINE L1 3 354 -2153 394 356 67 29 chr21 20255921 20256471 -24651099 + HAL1 LINE L1 472 1042 -1465 23 0 0 0 chr21 20257047 20257070 -24650500 + AT_rich Low_complexity Low_complexity 1 23 0 2560 61 0 0 chr21 20258284 20258595 -24648975 + AluY SINE Alu 1 311 0 1886 133 0 29 chr21 20258864 20259172 -24648398 + AluSg SINE Alu 11 309 -1 1122 230 28 62 chr21 20259554 20259775 -24647795 + MLT1A1 LTR MaLR 3 210 -155 2081 105 0 7 chr21 20259775 20260093 -24647477 + AluSx SINE Alu 1 316 0 1122 230 28 62 chr21 20260093 20260222 -24647348 + MLT1A1 LTR MaLR 210 342 -23 1630 91 39 0 chr21 20260841 20261073 -24646497 - L1PA7 LINE L1 -1101 5045 4805 6318 74 11 16 chr21 20261073 20262162 -24645408 + L1PA7 LINE L1 5069 6154 0 1714 121 38 0 chr21 20262550 20262814 -24644756 - LTR28 LTR ERV1 -746 274 1 527 216 0 0 chr21 20263586 20263725 -24643845 + L1PA16 LINE L1 6052 6190 0 271 167 33 0 chr21 20263921 20263981 -24643589 - LTR16A LTR ERVL -79 371 310 389 368 39 0 chr21 20264679 20264883 -24642687 - MERVL LTR ERVL -728 4926 4715 279 180 0 0 chr21 20265324 20265374 -24642196 - MERVL LTR ERVL -1498 4156 4107 2465 108 28 19 chr21 20265429 20265790 -24641780 - THE1B LTR MaLR 0 364 1 234 191 0 0 chr21 20265912 20265959 -24641611 + CT-rich Low_complexity Low_complexity 2 48 0 1301 62 6 0 chr21 20265959 20266135 -24641435 + (TTC)n Simple_repeat Simple_repeat 2 178 0 297 272 8 6 chr21 20266190 20266299 -24641271 - MERVL LTR ERVL -1686 3799 3696 28 0 0 0 chr21 20266368 20266396 -24641174 + AT_rich Low_complexity Low_complexity 1 28 0 4373 123 33 24 chr21 20266396 20267119 -24640451 - L1PA16 LINE L1 -9 6157 5428 9043 180 9 26 chr21 20267211 20268067 -24639503 - L1PA13 LINE L1 0 6866 5997 1515 170 0 90 chr21 20268067 20268390 -24639180 - AluJb SINE Alu -18 294 1 9043 180 9 26 chr21 20268390 20270212 -24637358 - L1PA13 LINE L1 -869 5997 4219 1674 253 11 9 chr21 20270225 20270668 -24636902 - L1PA13 LINE L1 -3802 3047 2604 396 162 0 0 chr21 20270658 20270732 -24636838 - L1PA13 LINE L1 -4136 2713 2640 * 8795 219 51 18 chr21 20270729 20272597 -24634973 - L1PA13 LINE L1 -4856 1983 53 539 285 121 23 chr21 20272773 20273292 -24634278 + L1ME2 LINE L1 4298 4867 -1279 414 331 70 0 chr21 20273686 20273858 -24633712 - MERVL LTR ERVL -1195 4290 4107 227 378 91 4 chr21 20274216 20274446 -24633124 - LTR16A LTR ERVL -50 400 151 1906 184 23 64 chr21 20275026 20275498 -24632072 - L1MC3 LINE L1 -108 7677 7225 193 289 12 72 chr21 20275537 20275620 -24631950 + MIR SINE MIR 72 149 -113 183 378 74 37 chr21 20275729 20275864 -24631706 - L2 LINE L2 -16 3256 3117 890 19 0 0 chr21 20276426 20276532 -24631038 + L1PA2 LINE L1 6049 6154 -1 251 204 109 66 chr21 20277595 20277732 -24629838 - L1MEc LINE L1 -4050 2346 2204 965 275 92 36 chr21 20277951 20278537 -24629033 + L1ME2 LINE L1 5497 6115 -49 250 274 0 0 chr21 20279638 20279700 -24627870 + (TA)n Simple_repeat Simple_repeat 1 62 0 1488 204 39 39 chr21 20279714 20280076 -24627494 + MLT1A2 LTR MaLR 1 362 -12 1997 122 0 3 chr21 20281052 20281340 -24626230 + AluSx SINE Alu 4 290 -22 189 0 0 0 chr21 20281340 20281361 -24626209 + (TA)n Simple_repeat Simple_repeat 2 22 0 2065 80 15 4 chr21 20281435 20281709 -24625861 - AluSg SINE Alu -21 289 13 189 213 0 0 chr21 20282128 20282175 -24625395 + (TA)n Simple_repeat Simple_repeat 2 48 0 23 108 0 0 chr21 20282198 20282291 -24625279 + AT_rich Low_complexity Low_complexity 1 93 0 26 0 0 0 chr21 20283565 20283591 -24623979 + AT_rich Low_complexity Low_complexity 1 26 0 31 58 0 0 chr21 20283653 20283705 -24623865 + AT_rich Low_complexity Low_complexity 1 52 0 1291 217 41 39 chr21 20283834 20284198 -24623372 - MLT1A1 LTR MaLR 0 365 1 3034 270 27 112 chr21 20284204 20285691 -24621879 - MLT1A1-int LTR MaLR -7 1364 5 231 310 23 16 chr21 20285933 20286062 -24621508 - HAL1b LINE L1 -81 1267 1138 182 239 14 0 chr21 20288027 20288098 -24619472 + (TA)n Simple_repeat Simple_repeat 1 72 0 1472 209 31 7 chr21 20288378 20288670 -24618900 - AluJb SINE Alu -13 299 1 22 35 0 0 chr21 20289255 20289284 -24618286 + AT_rich Low_complexity Low_complexity 1 29 0 5690 172 27 22 chr21 20289353 20291200 -24616370 + L1MA4 LINE L1 4163 5998 -302 6686 54 0 0 chr21 20291200 20292032 -24615538 + L1PA7 LINE L1 5312 6143 -11 228 35 0 0 chr21 20292035 20292064 -24615506 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5690 172 27 22 chr21 20292064 20292160 -24615410 + L1MA4 LINE L1 5999 6116 -184 568 150 50 0 chr21 20292172 20292272 -24615298 - L1PA11 LINE L1 0 6174 6070 840 180 0 33 chr21 20292272 20292452 -24615118 + L1MA4 LINE L1 6124 6300 0 257 351 130 14 chr21 20293173 20293449 -24614121 + L2 LINE L2 1985 2292 -1022 380 354 129 30 chr21 20293521 20294145 -24613425 + L2 LINE L2 2619 3305 -8 276 59 59 0 chr21 20294272 20294323 -24613247 + T-rich Low_complexity Low_complexity 2 55 0 494 263 73 11 chr21 20294656 20294835 -24612735 - MLT1L LTR MaLR -4 611 422 24 53 0 0 chr21 20294902 20294940 -24612630 + AT_rich Low_complexity Low_complexity 1 38 0 600 258 31 0 chr21 20295056 20295205 -24612365 - MSTC LTR MaLR -243 153 1 252 364 76 15 chr21 20295459 20295591 -24611979 + MIR3 SINE MIR 20 159 -49 194 356 60 43 chr21 20297068 20297301 -24610269 - L2 LINE L2 -1266 2048 1812 2292 107 0 3 chr21 20299353 20299662 -24607908 + AluSc SINE Alu 1 308 -1 1560 83 0 5 chr21 20300184 20300402 -24607168 - L1PA7 LINE L1 -3 6151 5935 26 82 0 0 chr21 20301603 20301664 -24605906 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr21 20301934 20301957 -24605613 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr21 20302662 20302708 -24604862 + AT_rich Low_complexity Low_complexity 1 46 0 226 333 69 28 chr21 20302956 20303100 -24604470 - L2 LINE L2 -2 3311 3162 223 460 77 0 chr21 20303341 20303626 -24603944 - L2 LINE L2 -534 2780 2474 753 277 78 19 chr21 20303852 20304173 -24603397 - L1ME3A LINE L1 0 6170 5831 3250 152 42 53 chr21 20304731 20305463 -24602107 - LTR8A LTR ERV1 -3 724 1 680 256 34 85 chr21 20305747 20306134 -24601436 + L1MEc LINE L1 1750 2116 -4280 522 91 0 91 chr21 20306136 20306246 -24601324 + MER41B-int LTR ERV1 6182 6281 -50 3850 148 6 8 chr21 20306248 20306884 -24600686 + MER41B LTR ERV1 1 635 0 1322 121 118 96 chr21 20306898 20307214 -24600356 + MER41A LTR ERV1 243 534 -20 1306 205 134 16 chr21 20307214 20307521 -24600049 + MER61A LTR ERV1 1 343 0 1322 121 118 96 chr21 20307521 20307536 -24600034 + MER41A LTR ERV1 534 547 -7 1346 209 164 51 chr21 20307597 20308067 -24599503 + LTR49 LTR ERV1 1 523 -72 201 74 0 0 chr21 20308067 20308094 -24599476 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 312 248 117 5 chr21 20308133 20308339 -24599231 + L1MEc LINE L1 2171 2399 -3997 596 148 0 20 chr21 20309251 20309384 -24598186 - AluSp/q SINE Alu 0 313 189 230 303 40 0 chr21 20309446 20309522 -24598048 + MIR SINE MIR 66 144 -64 300 53 0 0 chr21 20309530 20309568 -24598002 + (TA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr21 20309672 20309699 -24597871 + AT_rich Low_complexity Low_complexity 1 27 0 1913 122 7 0 chr21 20310540 20310850 -24596720 + AluSc SINE Alu 1 312 0 602 311 58 9 chr21 20311253 20311478 -24596092 + MLT1G LTR MaLR 44 279 -311 204 231 13 90 chr21 20312220 20312298 -24595272 + MIR3 SINE MIR 113 184 -24 3341 155 42 39 chr21 20312527 20313249 -24594321 - LTR8A LTR ERV1 -3 724 1 221 333 58 51 chr21 20314115 20314253 -24593317 - MER91A DNA MER1_type -2 194 56 28 61 0 0 chr21 20314296 20314345 -24593225 + AT_rich Low_complexity Low_complexity 1 49 0 443 132 0 0 chr21 20315519 20315587 -24591983 + L1PA16 LINE L1 6090 6157 -9 388 299 56 14 chr21 20315879 20316023 -24591547 + MIR SINE MIR 36 185 -77 21 0 0 0 chr21 20316191 20316212 -24591358 + AT_rich Low_complexity Low_complexity 1 21 0 1297 276 56 19 chr21 20316738 20317239 -24590331 + L1MD2 LINE L1 5825 6343 -16 623 293 22 6 chr21 20317869 20318050 -24589520 + MER5A DNA MER1_type 4 187 -2 641 288 63 3 chr21 20318332 20318631 -24588939 + L1ME LINE L1 5265 5581 -583 21227 152 13 20 chr21 20318666 20321011 -24586559 - L1P3 LINE L1 -1484 4977 2619 191 35 0 35 chr21 20321011 20321040 -24586530 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 21227 152 13 20 chr21 20321040 20323632 -24583938 - L1P3 LINE L1 -3842 2619 3 664 333 75 21 chr21 20323987 20324414 -24583156 + LTR16A1 LTR ERVL 8 457 0 2099 113 0 20 chr21 20325095 20325395 -24582175 + AluSg SINE Alu 3 296 -14 1108 179 0 5 chr21 20326452 20326642 -24580928 + AluSc SINE Alu 119 307 -2 180 0 0 0 chr21 20326739 20326759 -24580811 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2122 96 0 4 chr21 20326759 20327040 -24580530 - AluSx SINE Alu -32 280 1 207 100 0 0 chr21 20327111 20327141 -24580429 + (TA)n Simple_repeat Simple_repeat 2 31 0 202 213 21 0 chr21 20327263 20327310 -24580260 + CT-rich Low_complexity Low_complexity 1 48 0 219 274 32 11 chr21 20327319 20327414 -24580156 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 21 36 0 0 chr21 20328106 20328134 -24579436 + AT_rich Low_complexity Low_complexity 1 28 0 239 137 0 20 chr21 20328177 20328228 -24579342 + (TA)n Simple_repeat Simple_repeat 1 50 0 825 252 51 38 chr21 20329315 20329511 -24578059 + Charlie4a DNA MER1_type 44 236 -1725 2401 229 6 4 chr21 20329511 20329982 -24577588 + MER70A LTR ERVL 1 472 0 825 252 51 38 chr21 20329982 20330178 -24577392 + Charlie4a DNA MER1_type 236 441 -67 2019 201 33 26 chr21 20330180 20330788 -24576782 + L1MB2 LINE L1 5111 5720 -451 671 213 186 0 chr21 20330789 20330972 -24576598 + L1MB2 LINE L1 5952 6168 -3 585 218 41 11 chr21 20331961 20332172 -24575398 - L1M3 LINE L1 -687 5493 5270 1012 144 12 0 chr21 20332300 20332460 -24575110 - MLT1B LTR MaLR -13 377 216 260 331 38 25 chr21 20332461 20332621 -24574949 - L1MEc LINE L1 -4313 2512 2351 1088 166 9 9 chr21 20332621 20332832 -24574738 - Tigger1 DNA MER2_type 0 2418 2208 705 195 27 47 chr21 20332841 20332990 -24574580 - Tigger1 DNA MER2_type -2272 146 1 481 301 74 15 chr21 20332990 20333259 -24574311 - L1MEc LINE L1 -4471 2354 2070 24 32 0 0 chr21 20333301 20333332 -24574238 + AT_rich Low_complexity Low_complexity 1 31 0 1121 119 113 0 chr21 20333339 20333524 -24574046 - Tigger1 DNA MER2_type -511 1907 1702 9390 194 24 7 chr21 20333525 20336288 -24571282 - L1MA4A LINE L1 -263 6040 3229 4876 181 9 33 chr21 20336291 20337261 -24570309 - Tigger1 DNA MER2_type -1471 947 1 5233 169 20 17 chr21 20337261 20338260 -24569310 - L1MA9 LINE L1 -57 6255 5254 230 227 68 91 chr21 20338400 20338532 -24569038 - L1MEc LINE L1 -6354 188 60 828 320 109 47 chr21 20339859 20340472 -24567098 - L2 LINE L2 -597 2717 2067 1462 220 6 40 chr21 20340625 20340948 -24566622 + AluJo SINE Alu 1 312 0 2459 60 3 0 chr21 20342119 20342420 -24565150 - AluY SINE Alu -9 302 1 555 235 135 6 chr21 20343295 20343465 -24564105 + MER3 DNA MER1_type 5 196 -13 2208 141 18 30 chr21 20343701 20344036 -24563534 - L1PA13 LINE L1 0 6163 5832 2133 116 0 3 chr21 20344036 20344339 -24563231 + AluSx SINE Alu 1 302 -10 2208 141 18 30 chr21 20344339 20344401 -24563169 - L1PA13 LINE L1 -331 5832 5771 2684 84 20 18 chr21 20344925 20345319 -24562251 + L1PA8A LINE L1 5737 6131 0 180 217 0 0 chr21 20345436 20345482 -24562088 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 2401 92 0 0 chr21 20346478 20346781 -24560789 - AluSp SINE Alu -10 303 1 212 350 65 8 chr21 20346870 20346993 -24560577 + MIR SINE MIR 22 151 -57 3694 197 24 1 chr21 20347468 20348184 -24559386 + MER6 DNA MER2_type 134 865 0 581 200 9 9 chr21 20348282 20348397 -24559173 + AluJ SINE Alu 1 115 -187 1991 137 18 54 chr21 20348397 20348783 -24558787 - THE1C LTR MaLR -2 373 1 1029 194 5 0 chr21 20348783 20348974 -24558596 + AluJ SINE Alu 108 299 -13 28 0 0 0 chr21 20350460 20350488 -24557082 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr21 20350633 20350668 -24556902 + AT_rich Low_complexity Low_complexity 1 35 0 1545 198 0 14 chr21 20350938 20351231 -24556339 + AluJb SINE Alu 5 293 -19 1951 224 33 14 chr21 20351399 20351922 -24555648 - HUERS-P2 LTR ERV1 -2528 560 2 * 14545 175 14 19 chr21 20351922 20354520 -24553050 + HUERS-P2 LTR ERV1 505 3088 0 1287 200 70 37 chr21 20354520 20354985 -24552585 + LTR1 LTR ERV1 1 498 -328 575 245 6 38 chr21 20355014 20355173 -24552397 + LTR1B LTR ERV1 673 826 0 21 0 0 0 chr21 20355286 20355307 -24552263 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr21 20355609 20355641 -24551929 + AT_rich Low_complexity Low_complexity 1 32 0 1982 197 40 28 chr21 20355690 20356245 -24551325 - MLT2A2 LTR ERVL 0 554 1 23 54 0 0 chr21 20356358 20356395 -24551175 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 20356579 20356609 -24550961 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr21 20356619 20356670 -24550900 + AT_rich Low_complexity Low_complexity 1 51 0 604 264 16 44 chr21 20356889 20357071 -24550499 + MER58A DNA MER1_type 1 177 -47 25 0 0 0 chr21 20357274 20357299 -24550271 + AT_rich Low_complexity Low_complexity 1 25 0 307 127 59 51 chr21 20357865 20357983 -24549587 + (TTATA)n Simple_repeat Simple_repeat 2 120 0 21 0 0 0 chr21 20358874 20358895 -24548675 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr21 20360147 20360172 -24547398 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr21 20360241 20360284 -24547286 + AT_rich Low_complexity Low_complexity 1 43 0 1948 150 3 0 chr21 20360376 20360669 -24546901 - AluSx SINE Alu -18 294 1 22 35 0 0 chr21 20360778 20360807 -24546763 + AT_rich Low_complexity Low_complexity 1 29 0 1516 266 71 114 chr21 20361496 20363002 -24544568 - L1MCc LINE L1 -4959 1464 24 471 325 126 0 chr21 20363003 20363209 -24544361 - LTR16C LTR ERVL -40 451 220 364 338 112 56 chr21 20363930 20364483 -24543087 - L2 LINE L2 -1342 1972 1389 26 0 0 0 chr21 20364528 20364554 -24543016 + AT_rich Low_complexity Low_complexity 1 26 0 3447 66 9 7 chr21 20366241 20366693 -24540877 + MLT2A2 LTR ERVL 1 453 0 419 143 0 95 chr21 20367510 20367615 -24539955 + L1MA4 LINE L1 6200 6294 -6 320 213 66 73 chr21 20367673 20367809 -24539761 - MER5C DNA MER1_type -8 316 182 342 320 8 8 chr21 20367997 20368122 -24539448 - MER94 DNA DNA -2 132 8 4464 175 27 32 chr21 20368236 20369284 -24538286 + L1MB1 LINE L1 5131 6168 0 306 357 38 19 chr21 20369430 20369587 -24537983 - L2 LINE L2 -2809 505 346 1791 104 7 40 chr21 20369623 20369920 -24537650 + AluSx SINE Alu 1 287 -25 680 243 33 0 chr21 20372273 20372425 -24535145 + FAM SINE Alu 1 157 -18 1233 151 25 0 chr21 20373524 20373723 -24533847 + MER2 DNA MER2_type 3 206 -139 24 32 0 0 chr21 20373726 20373757 -24533813 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 20374156 20374178 -24533392 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr21 20374621 20374667 -24532903 + AT_rich Low_complexity Low_complexity 1 46 0 814 149 14 14 chr21 20374793 20374941 -24532629 - L1MA4 LINE L1 -15 6285 6138 30 77 0 0 chr21 20374955 20375020 -24532550 + AT_rich Low_complexity Low_complexity 1 65 0 254 304 0 26 chr21 20375666 20375781 -24531789 - L1ME LINE L1 -333 5829 5718 322 266 96 53 chr21 20375958 20376146 -24531424 - L1ME LINE L1 -724 5460 5265 23 33 0 0 chr21 20376226 20376256 -24531314 + AT_rich Low_complexity Low_complexity 1 30 0 314 193 18 28 chr21 20376647 20376756 -24530814 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 965 200 36 55 chr21 20376756 20377031 -24530539 - MSTB1 LTR MaLR -1 431 162 21 0 0 0 chr21 20377311 20377332 -24530238 + AT_rich Low_complexity Low_complexity 1 21 0 31 51 0 39 chr21 20377497 20377525 -24530045 + AT_rich Low_complexity Low_complexity 1 29 -46 1860 145 10 30 chr21 20377525 20377829 -24529741 + AluSx SINE Alu 1 298 -14 31 51 0 39 chr21 20377829 20377878 -24529692 + AT_rich Low_complexity Low_complexity 29 75 0 22 35 0 0 chr21 20378060 20378089 -24529481 + AT_rich Low_complexity Low_complexity 1 29 0 2182 160 70 8 chr21 20378121 20378522 -24529048 + MSTA LTR MaLR 1 426 -2 8379 185 20 16 chr21 20378524 20380169 -24527401 + MSTA-int LTR MaLR 1 1651 0 813 135 32 14 chr21 20380169 20380334 -24527236 + MSTA LTR MaLR 1 174 -190 627 99 22 0 chr21 20380347 20380438 -24527132 + MSTA LTR MaLR 336 428 0 576 267 62 4 chr21 20380719 20380959 -24526611 + L1M4 LINE L1 2944 3197 -2949 21 36 0 0 chr21 20381153 20381181 -24526389 + AT_rich Low_complexity Low_complexity 1 28 0 331 92 10 0 chr21 20381214 20381311 -24526259 + L1PA7 LINE L1 5984 6151 -3 601 250 68 112 chr21 20381503 20381758 -24525812 - L1MD2 LINE L1 -10 6349 6127 1562 180 7 24 chr21 20381758 20382047 -24525523 - AluJo SINE Alu -28 284 1 601 250 68 112 chr21 20382047 20382307 -24525263 - L1MD2 LINE L1 -232 6127 5857 1860 272 135 18 chr21 20382326 20383472 -24524098 - L1MDb LINE L1 -4380 2026 774 2490 246 29 18 chr21 20383787 20384431 -24523139 - MLT1A1-int LTR MaLR -865 794 157 2275 89 0 0 chr21 20384436 20384728 -24522842 - AluY SINE Alu -19 292 1 263 196 0 20 chr21 20385459 20385510 -24522060 - MLT1A1-int LTR MaLR -1562 173 124 786 239 99 38 chr21 20385581 20385924 -24521646 - MLT1A1 LTR MaLR 0 365 2 21 57 0 0 chr21 20386446 20386481 -24521089 + AT_rich Low_complexity Low_complexity 1 35 0 180 82 41 41 chr21 20386637 20386686 -24520884 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 261 235 59 25 chr21 20388592 20388711 -24518859 - L1MC5 LINE L1 -340 7621 7499 283 308 116 12 chr21 20389046 20389296 -24518274 - L1MC5 LINE L1 -733 7228 6953 640 206 136 27 chr21 20389376 20389560 -24518010 + MLT1E1 LTR MaLR 1 204 -450 739 288 43 67 chr21 20389593 20389968 -24517602 - MST-int LTR MaLR -659 992 627 1758 143 66 0 chr21 20390652 20390924 -24516646 + AluJb SINE Alu 1 290 -22 2934 221 17 7 chr21 20390925 20391639 -24515931 - L1 LINE L1 -1497 4649 3929 3445 89 39 24 chr21 20391644 20392185 -24515385 + L1P5 LINE L1 5264 5812 -339 25 65 0 0 chr21 20392195 20392241 -24515329 + AT_rich Low_complexity Low_complexity 1 46 0 313 258 102 23 chr21 20392277 20392405 -24515165 - LTR40b LTR ERVL -17 445 308 461 306 105 46 chr21 20392486 20393009 -24514561 + L1M4 LINE L1 2650 3203 -2943 438 266 57 0 chr21 20393040 20393164 -24514406 - FLAM_A SINE Alu -2 131 1 22 35 0 0 chr21 20393166 20393195 -24514375 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 20393226 20393247 -24514323 + AT_rich Low_complexity Low_complexity 1 21 0 910 272 24 7 chr21 20393381 20393668 -24513902 + MLT-int LTR MaLR 285 576 -1159 7260 204 25 11 chr21 20394580 20397037 -24510533 - L1PA16 LINE L1 -227 5939 3453 3433 245 52 9 chr21 20397040 20398083 -24509487 + L1PA16 LINE L1 2358 3445 -2701 690 260 31 5 chr21 20398080 20398303 -24509267 - L1ME3 LINE L1 -31 6131 5903 * 374 252 47 8 chr21 20398350 20398477 -24509093 - L1ME3 LINE L1 -270 5896 5765 34 0 0 0 chr21 20399434 20399468 -24508102 + AT_rich Low_complexity Low_complexity 1 34 0 1107 231 0 74 chr21 20400185 20400497 -24507073 + AluJo SINE Alu 1 289 -13 308 264 109 52 chr21 20400813 20401006 -24506564 - L1MCa LINE L1 -3989 2968 2765 537 219 0 0 chr21 20401006 20401125 -24506445 - L1MA3 LINE L1 0 6305 6187 722 194 6 0 chr21 20401126 20401270 -24506300 - L1ME3 LINE L1 -418 5751 5598 248 271 152 40 chr21 20401339 20401490 -24506080 - L1MCa LINE L1 -5633 1222 1055 272 278 26 9 chr21 20401945 20402060 -24505510 - L1MCa LINE L1 -6652 207 91 5086 201 26 14 chr21 20403087 20404216 -24503354 - L1MC1 LINE L1 -6 6327 5186 189 0 0 0 chr21 20404650 20404671 -24502899 + (TA)n Simple_repeat Simple_repeat 1 21 0 379 311 104 39 chr21 20405362 20405378 -24502192 + L2 LINE L2 1900 1914 -1400 1755 193 51 10 chr21 20405378 20405787 -24501783 + MSTB LTR MaLR 1 426 0 379 311 104 39 chr21 20405787 20406079 -24501491 + L2 LINE L2 1914 2228 -1086 459 271 34 51 chr21 20406195 20406372 -24501198 + MLT1D LTR MaLR 1 174 -331 1672 177 119 38 chr21 20406381 20406777 -24500793 + MSTA LTR MaLR 1 428 0 8127 204 24 4 chr21 20406777 20408396 -24499174 + MSTA-int LTR MaLR 1 1651 0 1822 167 141 24 chr21 20408396 20408779 -24498791 + MSTA LTR MaLR 1 428 0 4131 142 25 2 chr21 20408813 20409455 -24498115 + L1P3 LINE L1 8 664 -5797 1755 161 17 45 chr21 20410603 20410957 -24496613 + MER2 DNA MER2_type 1 344 0 1417 246 72 0 chr21 20411380 20411713 -24495857 - MLT1A1 LTR MaLR -8 357 1 3636 217 28 28 chr21 20411759 20412268 -24495302 - L1MB1 LINE L1 -1 6167 5656 4351 25 0 0 chr21 20412268 20412780 -24494790 + L1PA3 LINE L1 5642 6153 -2 3636 217 28 28 chr21 20412780 20413272 -24494298 - L1MB1 LINE L1 -512 5656 5166 3063 59 7 53 chr21 20413989 20414445 -24493125 + L1PA8 LINE L1 5738 6172 0 2562 36 3 0 chr21 20414987 20415290 -24492280 + AluY SINE Alu 1 304 -7 22 0 0 0 chr21 20416390 20416412 -24491158 + AT_rich Low_complexity Low_complexity 1 22 0 382 291 13 25 chr21 20417143 20417301 -24490269 + (CATATA)n Simple_repeat Simple_repeat 5 160 0 260 243 7 33 chr21 20417303 20417455 -24490115 + (TATATG)n Simple_repeat Simple_repeat 1 148 0 754 225 24 0 chr21 20417524 20417693 -24489877 - MLT1-int LTR MaLR -804 567 395 22 0 0 0 chr21 20417992 20418014 -24489556 + AT_rich Low_complexity Low_complexity 1 22 0 274 192 26 26 chr21 20418296 20418374 -24489196 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1983 120 0 7 chr21 20418486 20418769 -24488801 - AluSx SINE Alu -23 289 9 2294 59 0 18 chr21 20418858 20419144 -24488426 - AluY SINE Alu -30 281 1 193 324 99 0 chr21 20419145 20419216 -24488354 + MIR SINE MIR 99 176 -86 373 359 93 29 chr21 20419399 20419742 -24487828 - L2 LINE L2 0 3313 2949 280 377 74 22 chr21 20419822 20420053 -24487517 - L2 LINE L2 -455 2859 2617 1906 190 8 0 chr21 20420462 20420820 -24486750 - L1PB4 LINE L1 -2 6154 5794 248 123 263 0 chr21 20420824 20420881 -24486689 - L1P5 LINE L1 -305 5846 5775 2222 41 0 4 chr21 20421723 20421990 -24485580 + AluY SINE Alu 37 302 -9 345 261 0 43 chr21 20422170 20422262 -24485308 - L2 LINE L2 -5 3308 3221 319 310 18 44 chr21 20423277 20423390 -24484180 - L2 LINE L2 0 3313 3204 211 423 16 0 chr21 20423430 20423553 -24484017 - L2 LINE L2 0 3272 3148 356 64 0 0 chr21 20423814 20423861 -24483709 + MADE1 DNA Mariner 6 52 -28 282 290 35 103 chr21 20424703 20424848 -24482722 + LTR33 LTR ERVL 36 170 -351 1203 140 122 22 chr21 20425066 20425288 -24482282 - MSTA LTR MaLR 0 428 185 355 113 0 0 chr21 20425296 20425349 -24482221 - MSTA LTR MaLR -375 53 1 5596 221 27 54 chr21 20425687 20425977 -24481593 - L1MB1 LINE L1 -1 5991 5695 3519 115 0 4 chr21 20425977 20426490 -24481080 - MER9 LTR ERVK 0 511 1 5596 221 27 54 chr21 20426490 20428691 -24478879 - L1MB1 LINE L1 -297 5695 3535 1740 173 110 52 chr21 20428692 20429154 -24478416 + LTR2B LTR ERV1 1 489 -1 4147 255 37 52 chr21 20429172 20431282 -24476288 - L1MB1 LINE L1 -2457 3513 1397 592 282 7 13 chr21 20431285 20431480 -24476090 - L1MB1 LINE L1 -5041 850 659 565 326 72 43 chr21 20431595 20432296 -24475274 - L1MB1 LINE L1 -5200 691 190 534 332 79 4 chr21 20432432 20432685 -24474885 - L1MB1 LINE L1 -5611 280 9 33 85 0 0 chr21 20432738 20432820 -24474750 + AT_rich Low_complexity Low_complexity 1 82 0 29 47 0 0 chr21 20434870 20434913 -24472657 + AT_rich Low_complexity Low_complexity 1 43 0 199 283 17 17 chr21 20435382 20435442 -24472128 - L2 LINE L2 0 3313 3254 889 243 43 30 chr21 20435479 20435808 -24471762 + Charlie1b DNA MER1_type 58 390 -133 507 233 85 11 chr21 20435827 20436016 -24471554 + Charlie1b DNA MER1_type 321 523 0 912 148 0 0 chr21 20436362 20436504 -24471066 + U4 snRNA snRNA 3 144 -1 206 121 0 0 chr21 20436520 20436553 -24471017 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 602 319 35 13 chr21 20436970 20437202 -24470368 + MIR SINE MIR 25 261 -1 780 259 79 30 chr21 20438032 20438337 -24469233 + L2 LINE L2 2994 3313 0 25 0 0 0 chr21 20438410 20438435 -24469135 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr21 20438606 20438636 -24468934 + AT_rich Low_complexity Low_complexity 1 30 0 685 226 13 19 chr21 20438936 20439091 -24468479 - MLT1E3 LTR MaLR -49 575 422 45 16 0 16 chr21 20439527 20439549 -24468021 + AT_rich Low_complexity Low_complexity 1 22 -40 2582 100 0 0 chr21 20439549 20439910 -24467660 - L1PB1 LINE L1 -9 6142 5782 45 16 0 16 chr21 20439910 20439950 -24467620 + AT_rich Low_complexity Low_complexity 22 62 0 546 160 29 6 chr21 20439955 20440130 -24467440 + (TA)n Simple_repeat Simple_repeat 2 180 0 300 270 45 0 chr21 20440160 20440249 -24467321 + L1MC4 LINE L1 6613 6705 -1337 22 0 0 0 chr21 20440249 20440271 -24467299 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr21 20440280 20440312 -24467258 + AT_rich Low_complexity Low_complexity 1 32 0 300 50 101 29 chr21 20440329 20440468 -24467102 + (TA)n Simple_repeat Simple_repeat 2 150 0 248 117 106 0 chr21 20440480 20440574 -24466996 + (TA)n Simple_repeat Simple_repeat 1 104 0 3106 154 15 37 chr21 20440605 20440976 -24466594 - L1P5 LINE L1 -360 5791 5413 2304 80 0 3 chr21 20440976 20441287 -24466283 - AluY SINE Alu -1 310 1 1576 164 65 0 chr21 20441293 20441568 -24466002 - AluSx SINE Alu -19 293 1 3106 154 15 37 chr21 20441568 20442260 -24465310 - L1P5 LINE L1 -743 5408 4748 1266 218 42 13 chr21 20442256 20442563 -24465007 - L1P5 LINE L1 -2326 3820 3505 * 797 200 47 0 chr21 20442564 20442714 -24464856 - MER67C LTR ERV1 -162 548 392 950 173 37 9 chr21 20442714 20442928 -24464642 + L1MA4 LINE L1 6079 6298 -2 361 347 150 26 chr21 20443361 20443554 -24464016 - MIR SINE MIR -25 237 21 21 0 0 0 chr21 20444576 20444597 -24462973 + AT_rich Low_complexity Low_complexity 1 21 0 1705 212 14 3 chr21 20446319 20446663 -24460907 + MER7A DNA MER2_type 1 346 0 282 29 0 0 chr21 20446986 20447021 -24460549 + (CA)n Simple_repeat Simple_repeat 2 36 0 253 183 0 17 chr21 20447632 20447692 -24459878 + L1MC4 LINE L1 6644 6702 -1340 1803 267 22 8 chr21 20447860 20448358 -24459212 - MLT1D LTR MaLR 0 505 1 306 246 9 55 chr21 20448741 20448851 -24458719 + L1MD3 LINE L1 6158 6262 -1733 371 156 73 31 chr21 20448854 20448950 -24458620 + L1MA8 LINE L1 5976 6075 -216 * 2702 225 45 6 chr21 20448923 20449595 -24457975 + L1MC3 LINE L1 7073 7770 -15 24 24 0 24 chr21 20449685 20449706 -24457864 + AT_rich Low_complexity Low_complexity 1 21 -20 2575 199 49 2 chr21 20449706 20450280 -24457290 - L1MB3 LINE L1 -4 6179 5579 24 24 0 24 chr21 20450280 20450300 -24457270 + AT_rich Low_complexity Low_complexity 21 41 0 300 305 6 69 chr21 20450515 20450689 -24456881 + HAL1b LINE L1 232 394 -954 24 32 0 0 chr21 20450744 20450775 -24456795 + AT_rich Low_complexity Low_complexity 1 31 0 233 310 0 0 chr21 20450823 20450881 -24456689 + HAL1b LINE L1 394 451 -897 25 0 0 0 chr21 20450917 20450942 -24456628 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr21 20451631 20451655 -24455915 + AT_rich Low_complexity Low_complexity 1 24 0 275 260 71 87 chr21 20451710 20451906 -24455664 - L2 LINE L2 -8 3305 3113 201 178 44 0 chr21 20453196 20453241 -24454329 + GA-rich Low_complexity Low_complexity 2 48 0 2144 251 57 16 chr21 20453418 20454210 -24453360 - L1MB3 LINE L1 -985 5161 4338 272 260 50 30 chr21 20454400 20454500 -24453070 + L1M4 LINE L1 3437 3538 -2608 308 319 58 47 chr21 20455095 20455371 -24452199 + L1M4 LINE L1 3638 3916 -2230 2066 166 23 30 chr21 20456544 20456941 -24450629 + MER57A LTR ERV1 10 403 0 1357 224 53 3 chr21 20458582 20458886 -24448684 - LTR42 LTR ERVL -138 357 39 24 0 0 0 chr21 20459002 20459026 -24448544 + AT_rich Low_complexity Low_complexity 1 24 0 200 215 25 25 chr21 20459094 20459173 -24448397 + (TA)n Simple_repeat Simple_repeat 2 80 0 365 70 18 0 chr21 20459251 20459308 -24448262 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 355 354 119 36 chr21 20459384 20459746 -24447824 + L1MEd LINE L1 255 646 -5726 326 325 116 52 chr21 20460287 20460708 -24446862 + L1MEd LINE L1 997 1444 -4940 293 238 16 0 chr21 20461117 20461180 -24446390 + LTR42 LTR ERVL 295 358 -137 23 78 0 0 chr21 20461907 20461958 -24445612 + AT_rich Low_complexity Low_complexity 1 51 0 276 227 86 86 chr21 20462267 20462395 -24445175 - MIR SINE MIR -72 136 8 554 126 0 11 chr21 20463820 20463915 -24443655 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1231 185 128 57 chr21 20463964 20464331 -24443239 + MSTD LTR MaLR 1 393 -3 1410 209 56 39 chr21 20464508 20464867 -24442703 + MLT1B LTR MaLR 14 378 -12 12710 188 21 31 chr21 20465037 20465298 -24442272 + ERVL LTR ERVL 3262 3524 -2240 1331 199 100 141 chr21 20465298 20465786 -24441784 + MER70A LTR ERVL 5 472 0 12710 188 21 31 chr21 20465786 20468045 -24439525 + ERVL LTR ERVL 3524 5757 -7 1441 217 58 5 chr21 20468045 20468427 -24439143 + MLT2B1 LTR ERVL 1 452 -63 272 27 27 0 chr21 20468472 20468509 -24439061 + (TA)n Simple_repeat Simple_repeat 1 38 0 254 269 28 7 chr21 20468529 20468674 -24438896 + (TA)n Simple_repeat Simple_repeat 1 148 0 255 98 0 98 chr21 20468685 20468701 -24438869 + MLT2B1 LTR ERVL 466 482 -38 450 53 0 0 chr21 20468701 20468758 -24438812 + (CA)n Simple_repeat Simple_repeat 2 58 0 255 98 0 98 chr21 20468758 20468792 -24438778 + MLT2B1 LTR ERVL 482 511 -9 2309 132 8 16 chr21 20468792 20469170 -24438400 + THE1C LTR MaLR 1 375 0 9863 119 14 36 chr21 20469170 20469589 -24437981 + THE1C-int LTR MaLR 1 428 -1152 2154 75 11 7 chr21 20469589 20469869 -24437701 - AluY SINE Alu -2 309 29 9863 119 14 36 chr21 20469869 20471066 -24436504 + THE1C-int LTR MaLR 428 1580 0 2044 170 11 16 chr21 20471066 20471443 -24436127 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 20471663 20471684 -24435886 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 20472062 20472083 -24435487 + AT_rich Low_complexity Low_complexity 1 21 0 195 416 0 0 chr21 20472118 20472207 -24435363 - L2 LINE L2 -796 2518 2430 24 53 0 0 chr21 20473502 20473540 -24434030 + AT_rich Low_complexity Low_complexity 1 38 0 800 300 29 60 chr21 20475896 20476559 -24431011 + L1M4 LINE L1 1032 1673 -4869 1429 286 92 37 chr21 20476600 20478196 -24429374 + L1M4 LINE L1 1893 3526 -3118 2005 151 53 6 chr21 20478372 20478730 -24428840 + THE1C LTR MaLR 1 375 0 455 250 43 32 chr21 20478730 20478918 -24428652 + L1M4 LINE L1 5004 5193 -1451 616 172 9 0 chr21 20479195 20479311 -24428259 + L1PB4 LINE L1 6037 6153 -3 329 169 62 0 chr21 20479399 20479464 -24428106 + L1MA4 LINE L1 6022 6090 -210 188 299 58 11 chr21 20483599 20483686 -24423884 - MIR3 SINE MIR -6 202 112 22 35 0 0 chr21 20483891 20483920 -24423650 + AT_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr21 20484008 20484049 -24423521 + AT_rich Low_complexity Low_complexity 1 41 0 273 256 248 17 chr21 20484108 20484225 -24423345 - MLT1H LTR MaLR -29 520 377 406 256 0 12 chr21 20485446 20485532 -24422038 - MER2 DNA MER2_type -260 85 1 257 218 67 121 chr21 20485555 20485720 -24421850 - MLT1H LTR MaLR -38 511 356 201 298 26 88 chr21 20485991 20486105 -24421465 + L2 LINE L2 1359 1465 -1849 22 56 0 0 chr21 20487628 20487664 -24419906 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr21 20488370 20488421 -24419149 + AT_rich Low_complexity Low_complexity 1 51 0 2274 80 0 26 chr21 20488450 20488763 -24418807 - AluSc SINE Alu -4 305 1 282 57 57 0 chr21 20489402 20489455 -24418115 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 233 89 22 0 chr21 20489490 20489535 -24418035 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 247 65 43 0 chr21 20489575 20489621 -24417949 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 25 51 0 0 chr21 20490318 20490357 -24417213 + AT_rich Low_complexity Low_complexity 1 39 0 192 369 36 0 chr21 20490523 20490634 -24416936 - L2 LINE L2 0 3313 3199 2051 128 43 32 chr21 20490645 20490990 -24416580 + THE1B LTR MaLR 1 349 -15 32 81 0 0 chr21 20491178 20491252 -24416318 + AT_rich Low_complexity Low_complexity 1 74 0 538 322 86 43 chr21 20492686 20493224 -24414346 + HAL1 LINE L1 527 1087 -1420 2459 243 41 30 chr21 20493228 20493928 -24413642 + L1MD2 LINE L1 5633 6340 -19 268 297 11 33 chr21 20494237 20494328 -24413242 + MER58 DNA MER1_type 3 91 -295 2368 157 0 5 chr21 20494332 20494728 -24412842 + L1PA15 LINE L1 5762 6155 -10 472 216 10 10 chr21 20494761 20494863 -24412707 + MER58 DNA MER1_type 2318 2419 -1 251 133 0 17 chr21 20495112 20495172 -24412398 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 700 142 0 57 chr21 20495218 20495359 -24412211 + FLAM_C SINE Alu 1 133 0 230 150 0 50 chr21 20495827 20495841 -24411729 + (TAAAAA)n Simple_repeat Simple_repeat 1 14 -43 1193 207 70 39 chr21 20495841 20496126 -24411444 + AluJb SINE Alu 1 294 -8 230 150 0 50 chr21 20496126 20496171 -24411399 + (TAAAAA)n Simple_repeat Simple_repeat 14 57 0 301 284 31 43 chr21 20497166 20497328 -24410242 - HAL1 LINE L1 0 2507 2348 506 290 38 38 chr21 20497333 20497623 -24409947 - MER34B LTR ERV1 0 565 276 347 254 94 45 chr21 20497948 20498172 -24409398 - HAL1 LINE L1 -737 1770 1536 243 313 26 26 chr21 20498232 20498424 -24409146 + L1M4c LINE L1 1981 2172 -4212 1111 290 99 33 chr21 20498522 20498650 -24408920 + MLT1E2 LTR MaLR 5 123 -503 2792 71 3 0 chr21 20498650 20499004 -24408566 + THE1A LTR MaLR 1 355 0 1111 290 99 33 chr21 20499004 20499379 -24408191 + MLT1E2 LTR MaLR 123 563 -63 2339 71 3 3 chr21 20499379 20499688 -24407882 - AluY SINE Alu -2 309 1 1111 290 99 33 chr21 20499688 20499757 -24407813 + MLT1E2 LTR MaLR 563 626 0 24 0 0 0 chr21 20500148 20500172 -24407398 + AT_rich Low_complexity Low_complexity 1 24 0 1325 189 56 73 chr21 20500192 20500641 -24406929 - LTR56 LTR ERV1 0 445 5 721 268 71 55 chr21 20500715 20501096 -24406474 - LTR56-int LTR ERV1 -93 5030 4644 1776 163 7 7 chr21 20502042 20502343 -24405227 - AluJb SINE Alu -11 301 1 2069 135 3 3 chr21 20502366 20502677 -24404893 - AluSx SINE Alu -1 311 1 6073 61 1 15 chr21 20502966 20503773 -24403797 - L1PA6 LINE L1 -1437 4709 3914 6925 62 6 1 chr21 20503773 20505201 -24402369 + L1PA6 LINE L1 4723 6154 0 313 355 88 49 chr21 20506211 20506826 -24400744 - LTR56-int LTR ERV1 -2917 3884 3246 1722 182 0 56 chr21 20507389 20507746 -24399824 + MER1B DNA MER1_type 1 337 0 292 329 20 20 chr21 20507946 20508098 -24399472 - MER4B-int LTR ERV1 -4297 3459 3308 22 35 0 0 chr21 20509265 20509294 -24398276 + AT_rich Low_complexity Low_complexity 1 29 0 354 317 71 68 chr21 20510001 20510326 -24397244 - MER4B-int LTR ERV1 -6070 688 363 1511 198 50 62 chr21 20510751 20510852 -24396718 - LTR56 LTR ERV1 0 467 366 1964 122 113 3 chr21 20510852 20511180 -24396390 - THE1B LTR MaLR 0 364 1 1511 198 50 62 chr21 20511180 20511542 -24396028 - LTR56 LTR ERV1 -101 366 9 182 368 45 45 chr21 20511592 20511725 -24395845 - MIR3 SINE MIR -13 195 63 2294 196 39 59 chr21 20513458 20513632 -24393938 + MER34 LTR ERV1 11 187 -355 234 0 0 0 chr21 20513632 20513658 -24393912 + (TC)n Simple_repeat Simple_repeat 1 26 0 2294 196 39 59 chr21 20513658 20514024 -24393546 + MER34 LTR ERV1 187 540 -2 2211 126 0 0 chr21 20514215 20514525 -24393045 - AluSq SINE Alu -3 310 1 1963 238 52 42 chr21 20515473 20515514 -24392056 - L1ME2 LINE L1 -24 6140 6101 2154 112 3 0 chr21 20515514 20515800 -24391770 - AluSg SINE Alu -21 289 3 1963 238 52 42 chr21 20515800 20516456 -24391114 - L1ME2 LINE L1 -63 6101 5436 217 307 67 0 chr21 20516694 20516769 -24390801 - MIR SINE MIR -12 250 171 929 232 207 0 chr21 20516861 20517146 -24390424 + MER2 DNA MER2_type 1 344 0 1833 180 123 5 chr21 20517591 20517974 -24389596 + MSTA LTR MaLR 1 428 0 8822 156 6 40 chr21 20517976 20519609 -24387961 + MSTA-int LTR MaLR 3 1580 0 1663 183 146 5 chr21 20519611 20519982 -24387588 + MSTA LTR MaLR 3 425 -3 1372 253 25 40 chr21 20519986 20520460 -24387110 - MLT1C LTR MaLR 0 467 1 1140 236 42 9 chr21 20521101 20521435 -24386135 + L1ME1 LINE L1 5822 6166 0 226 189 0 38 chr21 20521736 20521789 -24385781 + L1MC4 LINE L1 6652 6702 -1340 861 31 0 0 chr21 20522498 20522596 -24384974 + AluY SINE Alu 197 294 -17 21 36 0 0 chr21 20522690 20522718 -24384852 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr21 20523717 20523740 -24383830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 867 68 0 0 chr21 20524107 20524224 -24383346 + AluY SINE Alu 194 310 -1 273 218 23 35 chr21 20524454 20524541 -24383029 + LTR16B LTR ERVL 365 450 -14 289 378 25 0 chr21 20524890 20525009 -24382561 - MIR3 SINE MIR -20 188 67 676 124 5 38 chr21 20525026 20525212 -24382358 + (TA)n Simple_repeat Simple_repeat 1 180 0 218 316 38 30 chr21 20525319 20525452 -24382118 - MIR SINE MIR -64 198 65 21 82 0 0 chr21 20525618 20525667 -24381903 + AT_rich Low_complexity Low_complexity 1 49 0 2376 76 0 10 chr21 20525976 20526290 -24381280 + AluY SINE Alu 1 311 0 396 71 0 0 chr21 20526807 20526863 -24380707 + (TG)n Simple_repeat Simple_repeat 2 57 0 313 361 51 13 chr21 20527171 20527329 -24380241 - MIR SINE MIR -38 224 61 672 77 0 0 chr21 20527367 20527458 -24380112 + (CATAG)n Simple_repeat Simple_repeat 2 92 0 1289 184 65 22 chr21 20528271 20528548 -24379022 - AluJo SINE Alu -22 290 2 615 174 0 0 chr21 20529170 20529302 -24378268 - L1MA8 LINE L1 -1 6290 6159 355 329 90 32 chr21 20529763 20530040 -24377530 + MER89-int LTR ERV1 3173 3465 -3336 748 329 51 57 chr21 20530274 20530752 -24376818 + MER89-int LTR ERV1 1494 1973 -2674 1056 96 0 0 chr21 20530752 20530898 -24376672 + L1PB1 LINE L1 6005 6150 -1 748 329 51 57 chr21 20530898 20530909 -24376661 + MER89-int LTR ERV1 1973 1983 -2664 2019 82 7 14 chr21 20530909 20531175 -24376395 + AluSp SINE Alu 1 266 -47 270 0 0 0 chr21 20531175 20531205 -24376365 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2019 82 7 14 chr21 20531205 20531217 -24376353 + AluSp SINE Alu 266 277 -36 748 329 51 57 chr21 20531217 20531407 -24376163 + MER89-int LTR ERV1 1983 2170 -2477 417 97 69 0 chr21 20531609 20531681 -24375889 - MADE1 DNA Mariner -3 77 1 1422 284 74 49 chr21 20531841 20533307 -24374263 + L1ME1 LINE L1 455 1927 -4153 311 304 22 0 chr21 20533331 20533423 -24374147 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 13781 158 21 15 chr21 20533423 20533874 -24373696 - Tigger1 DNA MER2_type 0 2418 1972 6999 177 18 2 chr21 20533874 20536012 -24371558 + L1PA13 LINE L1 3996 6157 -6 13781 158 21 15 chr21 20536012 20537958 -24369612 - Tigger1 DNA MER2_type -446 1972 5 24 0 0 0 chr21 20537961 20537985 -24369585 + AT_rich Low_complexity Low_complexity 1 24 0 853 281 100 26 chr21 20537985 20538679 -24368891 + L1ME1 LINE L1 1967 2729 -3351 299 317 66 8 chr21 20538736 20538995 -24368575 + L1ME1 LINE L1 2997 3270 -2810 32 95 0 0 chr21 20539020 20539115 -24368455 + AT_rich Low_complexity Low_complexity 1 95 0 310 328 6 23 chr21 20539138 20539315 -24368255 + L1ME1 LINE L1 3455 3628 -2452 987 238 71 45 chr21 20539365 20539786 -24367784 + L1ME1 LINE L1 3618 4049 -2031 1890 241 50 85 chr21 20539960 20540142 -24367428 + L1ME1 LINE L1 4414 4601 -1499 2000 139 3 0 chr21 20540142 20540430 -24367140 + AluSq SINE Alu 2 290 -23 1890 241 50 85 chr21 20540430 20540988 -24366582 + L1ME1 LINE L1 4601 5177 -923 435 189 0 47 chr21 20540988 20541094 -24366476 - L1PB4 LINE L1 0 6156 6056 1890 241 50 85 chr21 20541094 20541406 -24366164 + L1ME1 LINE L1 5177 5498 -602 1905 106 0 0 chr21 20541406 20541660 -24365910 + AluSx SINE Alu 38 291 -21 1890 241 50 85 chr21 20541660 20542354 -24365216 + L1ME1 LINE L1 5498 6095 -5 2095 173 56 24 chr21 20543983 20544394 -24363176 - MSTB LTR MaLR -2 424 1 36 23 0 0 chr21 20545395 20545438 -24362132 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 20546072 20546094 -24361476 + AT_rich Low_complexity Low_complexity 1 22 0 252 100 0 0 chr21 20546103 20546143 -24361427 + (TA)n Simple_repeat Simple_repeat 1 40 0 591 274 61 19 chr21 20547028 20547240 -24360330 - MER58A DNA MER1_type -2 222 2 400 305 91 63 chr21 20548076 20548361 -24359209 + MLT1I LTR MaLR 99 391 -18 22 70 0 0 chr21 20548720 20548763 -24358807 + AT_rich Low_complexity Low_complexity 1 43 0 717 189 79 24 chr21 20549146 20549310 -24358260 + Tigger1 DNA MER2_type 1 173 -2245 * 984 171 43 19 chr21 20549286 20549497 -24358073 + Tigger1 DNA MER2_type 2202 2417 -1 264 283 8 128 chr21 20549497 20549740 -24357830 + MLT1I LTR MaLR 181 392 -17 336 341 15 15 chr21 20549889 20550024 -24357546 + HAL1 LINE L1 1441 1575 -932 887 248 99 0 chr21 20550699 20550901 -24356669 + MER52A LTR ERV1 1531 1752 -3 4446 110 35 1 chr21 20550901 20551226 -24356344 + L1PB1 LINE L1 5447 5760 -391 465 103 0 0 chr21 20551226 20551294 -24356276 + (CA)n Simple_repeat Simple_repeat 2 69 0 4446 110 35 1 chr21 20551294 20551650 -24355920 + L1PB1 LINE L1 5760 6151 0 531 0 0 0 chr21 20551895 20551954 -24355616 + (TG)n Simple_repeat Simple_repeat 2 60 0 431 280 64 32 chr21 20552334 20552491 -24355079 - LTR16C LTR ERVL -7 484 323 435 223 91 16 chr21 20553443 20553564 -24354006 - L1MA10 LINE L1 -36 6298 6169 2742 186 24 9 chr21 20553607 20554160 -24353410 - L1MB1 LINE L1 -21 6168 5608 426 223 10 0 chr21 20554168 20554271 -24353299 + L1 LINE L1 4280 4383 -1763 456 151 108 0 chr21 20554277 20554370 -24353200 + L1MB2 LINE L1 6069 6171 0 1453 206 95 3 chr21 20554405 20554774 -24352796 + L1 LINE L1 4369 4771 -1375 3927 155 30 6 chr21 20555298 20556008 -24351562 - L1MA4A LINE L1 -5 6298 5572 334 329 54 61 chr21 20556586 20556866 -24350704 - L2 LINE L2 -10 3303 3026 30 59 0 0 chr21 20557488 20557539 -24350031 + AT_rich Low_complexity Low_complexity 1 51 0 1864 156 6 22 chr21 20557647 20557962 -24349608 - AluSx SINE Alu 0 312 3 626 309 107 57 chr21 20558575 20559058 -24348512 + L2 LINE L2 2506 3077 -236 1224 183 48 48 chr21 20559058 20559348 -24348222 - AluJo SINE Alu -22 290 1 626 309 107 57 chr21 20559348 20559593 -24347977 + L2 LINE L2 3077 3308 -5 1569 181 127 31 chr21 20560211 20560728 -24346842 - MLT2A2 LTR ERVL 0 554 1 30 0 0 0 chr21 20560802 20560832 -24346738 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr21 20560883 20560915 -24346655 + AT_rich Low_complexity Low_complexity 1 32 0 750 333 58 19 chr21 20561588 20561900 -24345670 + MLT1I LTR MaLR 68 391 -18 1072 239 29 52 chr21 20562357 20562715 -24344855 - MER4A LTR ERV1 0 621 256 2451 95 0 3 chr21 20562715 20563063 -24344507 + L1PB1 LINE L1 5801 6147 -4 1072 239 29 52 chr21 20563063 20563305 -24344265 - MER4A LTR ERV1 -365 256 114 2059 90 49 0 chr21 20563305 20563593 -24343977 - AluSq SINE Alu -11 302 1 1072 239 29 52 chr21 20563593 20563654 -24343916 - MER4A LTR ERV1 -507 114 53 557 273 17 23 chr21 20563680 20563856 -24343714 + MLT1B LTR MaLR 208 382 -8 22 0 0 0 chr21 20564920 20564942 -24342628 + AT_rich Low_complexity Low_complexity 1 22 0 216 270 9 18 chr21 20565675 20565786 -24341784 + (TA)n Simple_repeat Simple_repeat 2 111 0 1279 234 13 20 chr21 20565790 20566093 -24341477 - AluJb SINE Alu -11 301 1 23 92 0 0 chr21 20566427 20566492 -24341078 + AT_rich Low_complexity Low_complexity 1 65 0 1640 150 75 33 chr21 20566857 20567217 -24340353 + THE1C LTR MaLR 1 375 0 9030 142 23 35 chr21 20567218 20568813 -24338757 + THE1C-int LTR MaLR 2 1576 -4 1948 127 61 25 chr21 20568817 20569179 -24338391 + THE1C LTR MaLR 1 375 0 279 289 108 0 chr21 20569331 20569414 -24338156 + AluJb SINE Alu 37 128 -174 21 0 0 0 chr21 20569648 20569669 -24337901 + AT_rich Low_complexity Low_complexity 1 21 0 42 36 0 0 chr21 20569728 20569784 -24337786 + AT_rich Low_complexity Low_complexity 1 56 0 611 254 43 54 chr21 20570333 20570612 -24336958 + MER50-int LTR ERV1 12 287 -4584 1949 165 125 5 chr21 20570981 20571356 -24336214 - MSTA LTR MaLR 0 428 9 7768 183 93 5 chr21 20571370 20572882 -24334688 - MSTA-int LTR MaLR -6 1645 1 1867 139 142 18 chr21 20572882 20573263 -24334307 - MSTA LTR MaLR 0 428 1 2619 177 10 29 chr21 20574229 20574748 -24332822 - MER41B LTR ERV1 -13 622 114 298 267 30 10 chr21 20575104 20575205 -24332365 + MER50-int LTR ERV1 5488 5590 -3388 1613 178 4 4 chr21 20576435 20576743 -24330827 + AluSx SINE Alu 5 312 0 279 279 18 67 chr21 20576748 20576913 -24330657 + MER50-int LTR ERV1 2699 2855 -1792 405 320 22 26 chr21 20577809 20578037 -24329533 + MER70-int LTR ERVL 4463 4689 -334 * 1295 306 74 35 chr21 20577924 20578225 -24329345 + MER50-int LTR ERV1 4214 4502 -369 2196 101 0 17 chr21 20578225 20578523 -24329047 + AluSq SINE Alu 1 293 -20 1295 306 74 35 chr21 20578523 20578854 -24328716 + MER50-int LTR ERV1 4502 4871 0 1251 210 70 48 chr21 20580685 20581042 -24326528 + MLT1A1 LTR MaLR 1 365 0 2212 117 0 0 chr21 20581450 20581759 -24325811 + AluSx SINE Alu 1 309 -3 197 356 34 0 chr21 20581848 20581907 -24325663 - L2 LINE L2 -49 3223 3163 1254 272 41 39 chr21 20582143 20582680 -24324890 - L1ME1 LINE L1 -31 6135 5598 1542 181 98 12 chr21 20582685 20582833 -24324737 - MLT1A1 LTR MaLR 0 365 231 3298 143 82 51 chr21 20582833 20583503 -24324067 - LTR8 LTR ERV1 0 691 1 1542 181 98 12 chr21 20583503 20583690 -24323880 - MLT1A1 LTR MaLR -134 231 1 4330 223 60 10 chr21 20583704 20584953 -24322617 - L1MC1 LINE L1 -8 6325 5013 375 266 174 16 chr21 20584937 20585121 -24322449 - L1ME1 LINE L1 -562 5604 5392 * 2371 78 0 0 chr21 20585181 20585476 -24322094 - AluY SINE Alu -16 295 1 591 245 60 7 chr21 20586083 20586234 -24321336 + MER50 LTR ERV1 10 168 -566 2456 229 37 18 chr21 20586239 20586393 -24321177 + MER50 LTR ERV1 106 256 -478 2171 76 45 7 chr21 20586393 20586682 -24320888 + AluY SINE Alu 1 300 -11 2456 229 37 18 chr21 20586682 20587143 -24320427 + MER50 LTR ERV1 256 733 -1 2731 179 37 52 chr21 20587390 20587986 -24319584 - MER67C LTR ERV1 -97 613 27 229 294 12 24 chr21 20587997 20588082 -24319488 + L2 LINE L2 2650 2733 -581 3389 107 2 9 chr21 20588170 20588694 -24318876 - L1PA13 LINE L1 0 6163 5644 183 374 63 53 chr21 20588839 20589029 -24318541 - L2 LINE L2 -658 2656 2465 288 327 83 30 chr21 20589143 20589311 -24318259 + MIR SINE MIR 49 225 -37 1432 222 34 47 chr21 20589945 20590332 -24317238 + MLT1B LTR MaLR 1 382 -8 844 150 27 0 chr21 20590801 20590948 -24316622 + MER67D LTR ERV1 16 166 -348 5695 62 28 36 chr21 20590955 20591741 -24315829 - LTR17 LTR ERV1 0 780 1 609 238 149 0 chr21 20591744 20591912 -24315658 + MER67D LTR ERV1 313 505 -9 2826 19 0 0 chr21 20592384 20592702 -24314868 - AluYb8 SINE Alu 0 318 1 32 57 0 0 chr21 20593803 20593856 -24313714 + AT_rich Low_complexity Low_complexity 1 53 0 1177 79 30 0 chr21 20594211 20594375 -24313195 + L1PA13 LINE L1 5992 6160 -3 2946 130 2 15 chr21 20594580 20595043 -24312527 + LTR22A LTR ERVK 2 458 0 876 295 39 82 chr21 20595058 20595620 -24311950 + MLT1H LTR MaLR 10 547 -2 21 36 0 0 chr21 20595962 20595990 -24311580 + AT_rich Low_complexity Low_complexity 1 28 0 354 215 13 0 chr21 20596453 20596532 -24311038 + MLT1F1 LTR MaLR 488 567 0 514 267 193 22 chr21 20597056 20597367 -24310203 - L1MC/D LINE L1 -2272 5839 5476 2630 271 105 69 chr21 20597376 20599330 -24308240 - L1MC/D LINE L1 -768 5447 3347 513 92 0 0 chr21 20599330 20599406 -24308164 + (TG)n Simple_repeat Simple_repeat 2 77 0 2630 271 105 69 chr21 20599406 20600420 -24307150 - L1MC/D LINE L1 -2868 3347 2371 305 286 113 13 chr21 20600475 20600706 -24306864 - L1MC/D LINE L1 -4102 2294 2041 1504 214 0 25 chr21 20601014 20601332 -24306238 - AluJb SINE Alu -2 310 1 30 0 0 0 chr21 20601537 20601567 -24306003 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 20601748 20601770 -24305800 + AT_rich Low_complexity Low_complexity 1 22 0 1532 133 33 36 chr21 20601896 20602197 -24305373 - THE1C LTR MaLR -75 300 1 2572 227 58 28 chr21 20602197 20602450 -24305120 - L1MB1 LINE L1 -239 5929 5685 4366 62 5 28 chr21 20602450 20603050 -24304520 - L1PA8 LINE L1 -2 6170 5585 2572 227 58 28 chr21 20603050 20604168 -24303402 - L1MB1 LINE L1 -483 5685 4517 281 196 54 0 chr21 20604255 20604311 -24303259 - THE1C-int LTR MaLR -409 1171 1113 862 185 127 21 chr21 20604326 20604515 -24303055 + THE1-int LTR MaLR 963 1171 -409 1294 238 36 9 chr21 20604602 20604938 -24302632 + L1 LINE L1 4517 4861 -1285 * 4615 154 78 58 chr21 20604936 20605662 -24301908 - THE1C-int LTR MaLR -617 963 213 2131 156 55 57 chr21 20605662 20606155 -24301415 + LTR22B LTR ERVK 1 492 0 4615 154 78 58 chr21 20606155 20606370 -24301200 - THE1C-int LTR MaLR -1367 213 4 1017 154 58 73 chr21 20606373 20606632 -24300938 - THE1C LTR MaLR 0 375 121 2342 227 41 14 chr21 20606632 20607284 -24300286 + L1 LINE L1 3313 3982 -2164 1165 244 47 17 chr21 20608280 20608682 -24298888 + Charlie1b DNA MER1_type 50 463 -60 21 0 0 0 chr21 20608688 20608709 -24298861 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr21 20608766 20608798 -24298772 + AT_rich Low_complexity Low_complexity 1 32 0 2123 121 7 3 chr21 20609106 20609412 -24298158 + AluSq SINE Alu 1 307 -6 2315 285 60 47 chr21 20610029 20611245 -24296325 + L1MCa LINE L1 32 1194 -4851 1789 197 12 44 chr21 20611247 20611658 -24295912 + MLT2C2 LTR ERVL 12 409 -55 291 54 0 0 chr21 20611684 20611721 -24295849 + (TAGG)n Simple_repeat Simple_repeat 1 37 0 1634 254 145 47 chr21 20611775 20613390 -24294180 + L1MCa LINE L1 1293 3078 -3486 214 179 0 0 chr21 20613427 20613466 -24294104 + (AATAG)n Simple_repeat Simple_repeat 2 40 0 662 275 28 14 chr21 20613466 20613677 -24293893 + L1MC3 LINE L1 7056 7269 -516 8605 245 33 16 chr21 20613764 20614662 -24292908 + L1MCa LINE L1 3168 4050 -2514 203 0 0 36 chr21 20614662 20614690 -24292880 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8605 245 33 16 chr21 20614690 20615245 -24292325 + L1MCa LINE L1 4050 4594 -1970 2676 39 0 0 chr21 20615245 20615556 -24292014 + AluY SINE Alu 1 311 0 8605 245 33 16 chr21 20615556 20616691 -24290879 + L1MCa LINE L1 4594 5800 -764 499 256 58 35 chr21 20616694 20616866 -24290704 + L1M2 LINE L1 5538 5713 -599 1462 136 4 9 chr21 20616947 20617175 -24290395 - AluSg/x SINE Alu 0 312 86 390 21 0 0 chr21 20617223 20617270 -24290300 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr21 20617574 20617595 -24289975 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 20617695 20617729 -24289841 + AT_rich Low_complexity Low_complexity 1 34 0 1927 185 48 30 chr21 20619207 20619750 -24287820 + MLT2A2 LTR ERVL 2 554 0 2397 112 0 3 chr21 20619754 20620102 -24287468 + THE1-int LTR MaLR 6 352 -1228 400 254 24 48 chr21 20620222 20620306 -24287264 - AluJo SINE Alu -100 202 120 180 0 0 0 chr21 20620306 20620326 -24287244 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 400 254 24 48 chr21 20620326 20620367 -24287203 - AluJo SINE Alu -182 120 80 315 275 28 9 chr21 20620498 20620607 -24286963 + L1ME1 LINE L1 5209 5319 -827 1076 277 117 24 chr21 20620754 20621259 -24286311 + L1ME1 LINE L1 5425 5976 -190 568 290 70 23 chr21 20621435 20621907 -24285663 + L1M4 LINE L1 4672 5165 -981 638 62 57 34 chr21 20621978 20622154 -24285416 + (TA)n Simple_repeat Simple_repeat 1 180 0 1973 120 17 3 chr21 20622158 20622450 -24285120 + AluSg SINE Alu 1 296 -14 1800 82 0 50 chr21 20622450 20622732 -24284838 + L1PA8 LINE L1 5905 6172 0 8301 236 93 20 chr21 20622743 20626091 -24281479 + L1MC3 LINE L1 4194 7785 0 1805 45 0 0 chr21 20626886 20627107 -24280463 + L1PA4 LINE L1 5932 6152 -3 2229 116 68 3 chr21 20627410 20627764 -24279806 + MER51B LTR ERV1 1 377 0 10576 121 107 79 chr21 20627764 20628792 -24278778 + MER51B-int LTR ERV1 1 999 -6817 2149 80 3 89 chr21 20628792 20629119 -24278451 + AluSp SINE Alu 1 299 -14 10576 121 107 79 chr21 20629119 20631247 -24276323 + MER51B-int LTR ERV1 999 3327 -4489 1861 200 58 28 chr21 20631219 20631688 -24275882 + MER51B-int LTR ERV1 1474 1956 -3261 * 1770 144 86 10 chr21 20631685 20632071 -24275499 + MER51B-int LTR ERV1 2216 4280 -1666 * 605 130 10 0 chr21 20632070 20632170 -24275400 + MER51B-int LTR ERV1 5249 5349 -2188 * 8822 147 59 38 chr21 20632160 20633529 -24274041 + MER51B-int LTR ERV1 5620 6958 -858 2075 126 0 19 chr21 20633529 20633838 -24273732 - AluY SINE Alu -8 303 1 8822 147 59 38 chr21 20633838 20633907 -24273663 + MER51B-int LTR ERV1 6958 7024 -792 240 35 0 0 chr21 20633907 20633936 -24273634 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 8822 147 59 38 chr21 20633936 20634351 -24273219 + MER51B-int LTR ERV1 7024 7815 -1 2443 103 50 6 chr21 20634362 20634722 -24272848 + MER51B LTR ERV1 2 377 0 227 313 175 67 chr21 20636090 20636496 -24271074 - L2 LINE L2 -2 3311 2862 461 143 88 11 chr21 20636574 20636665 -24270905 + MER4A LTR ERV1 1 98 -566 1767 128 169 68 chr21 20636665 20637032 -24270538 + MER4A LTR ERV1 261 664 0 2275 113 0 0 chr21 20637162 20637473 -24270097 - AluSx SINE Alu -1 311 1 743 343 88 49 chr21 20637501 20638058 -24269512 - L2 LINE L2 -665 2649 2043 2080 121 10 0 chr21 20638058 20638363 -24269207 + AluY SINE Alu 1 308 -3 743 343 88 49 chr21 20638363 20638689 -24268881 - L2 LINE L2 -1271 2043 1731 495 0 0 0 chr21 20640950 20641005 -24266565 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 203 169 56 0 chr21 20641231 20641302 -24266268 + (TA)n Simple_repeat Simple_repeat 2 76 0 33 73 0 0 chr21 20641302 20641370 -24266200 + AT_rich Low_complexity Low_complexity 1 68 0 4234 153 41 9 chr21 20642006 20642803 -24264767 - L1MA4 LINE L1 -3 6297 5475 3257 175 39 0 chr21 20642809 20643472 -24264098 - L1MA4 LINE L1 -997 5149 4461 706 167 0 58 chr21 20643482 20643638 -24263932 - L1MA8 LINE L1 -18 6273 6127 1715 150 33 15 chr21 20643917 20644190 -24263380 + AluSx SINE Alu 11 288 -24 26 30 0 0 chr21 20644866 20644899 -24262671 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr21 20645105 20645136 -24262434 + AT_rich Low_complexity Low_complexity 1 31 0 544 126 11 11 chr21 20645136 20645231 -24262339 - L1MA3 LINE L1 -43 6262 6168 2313 107 52 14 chr21 20645319 20645666 -24261904 + THE1B LTR MaLR 1 360 -4 28 0 0 0 chr21 20645672 20645700 -24261870 + AT_rich Low_complexity Low_complexity 1 28 0 2303 125 35 35 chr21 20646351 20646775 -24260795 - L1MA2 LINE L1 0 6304 5881 30 27 0 0 chr21 20648127 20648164 -24259406 + AT_rich Low_complexity Low_complexity 1 37 0 1600 231 25 26 chr21 20648478 20648986 -24258584 - L1MA2 LINE L1 -812 5334 4840 27 81 0 0 chr21 20649048 20649110 -24258460 + AT_rich Low_complexity Low_complexity 1 62 0 1215 303 74 29 chr21 20649152 20650344 -24257226 - L1M4 LINE L1 -1887 4259 3014 1640 212 16 11 chr21 20650543 20650906 -24256664 + MLT1A1 LTR MaLR 1 365 0 539 299 42 6 chr21 20650948 20651115 -24256455 - MER58C DNA MER1_type -41 174 2 205 200 0 22 chr21 20651201 20651246 -24256324 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 233 286 11 0 chr21 20651274 20651365 -24256205 - L1MC4 LINE L1 -1339 6703 6612 294 211 26 35 chr21 20651390 20651504 -24256066 + (TA)n Simple_repeat Simple_repeat 2 114 0 539 345 24 0 chr21 20651585 20651791 -24255779 + MER58C DNA MER1_type 2 212 -3 29 0 0 0 chr21 20651801 20651830 -24255740 + AT_rich Low_complexity Low_complexity 1 29 0 247 111 0 93 chr21 20651910 20651964 -24255606 - L1PA8 LINE L1 -5 6163 6115 2108 109 3 3 chr21 20652034 20652328 -24255242 + AluSq SINE Alu 1 294 -19 219 103 0 0 chr21 20652367 20652406 -24255164 + (GA)n Simple_repeat Simple_repeat 2 40 0 1336 211 53 41 chr21 20652568 20652910 -24254660 - MLT1A1 LTR MaLR 0 365 20 582 205 137 25 chr21 20652926 20653087 -24254483 + MER58A DNA MER1_type 46 224 0 253 306 28 5 chr21 20653104 20653217 -24254353 + MLT1H1 LTR MaLR 256 390 -165 215 135 39 19 chr21 20653263 20653315 -24254255 + (TA)n Simple_repeat Simple_repeat 2 54 0 297 0 0 0 chr21 20653317 20653350 -24254220 + (CA)n Simple_repeat Simple_repeat 2 34 0 2782 93 23 5 chr21 20653350 20653746 -24253824 - MLT2A1 LTR ERVL -41 403 1 255 242 91 31 chr21 20653746 20653872 -24253698 + MLT1H1 LTR MaLR 412 553 -2 228 253 72 12 chr21 20653872 20653955 -24253615 + MLT1H1-int LTR MaLR 5 92 -1643 1414 234 28 17 chr21 20655009 20655175 -24252395 + MLT1A1 LTR MaLR 1 164 -201 204 67 0 0 chr21 20655175 20655205 -24252365 + (TCTCTG)n Simple_repeat Simple_repeat 6 35 0 1414 234 28 17 chr21 20655205 20655397 -24252173 + MLT1A1 LTR MaLR 164 363 -2 1850 146 29 47 chr21 20656255 20656597 -24250973 - MER1B DNA MER1_type 0 337 2 332 311 72 21 chr21 20657545 20657739 -24249831 - MIR SINE MIR -21 241 40 185 320 60 40 chr21 20657812 20657962 -24249608 - L2 LINE L2 -46 3267 3115 2117 110 3 3 chr21 20658088 20658397 -24249173 + AluSc SINE Alu 1 309 0 456 163 39 0 chr21 20658584 20658737 -24248833 + (TA)n Simple_repeat Simple_repeat 1 159 0 181 172 31 0 chr21 20658760 20658824 -24248746 + (TA)n Simple_repeat Simple_repeat 1 66 0 2226 91 7 0 chr21 20659180 20659478 -24248092 + AluSp SINE Alu 1 300 -13 404 288 135 28 chr21 20659669 20660238 -24247332 + L1ME3A LINE L1 4080 4709 -1437 279 286 172 12 chr21 20660757 20661100 -24246470 + L1ME3A LINE L1 5352 5749 -413 300 299 40 11 chr21 20661210 20661384 -24246186 + L1ME3A LINE L1 5769 5947 -223 283 293 88 17 chr21 20662003 20662184 -24245386 - MER69 DNA AcHobo -104 2422 2229 1853 132 47 3 chr21 20662289 20662585 -24244985 - AluSc SINE Alu 0 309 1 3440 134 24 84 chr21 20662587 20663012 -24244558 - L1PA16 LINE L1 -6 6160 5711 200 33 0 33 chr21 20663012 20663042 -24244528 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1961 132 0 14 chr21 20663042 20663331 -24244239 - AluSq SINE Alu -28 285 1 3440 134 24 84 chr21 20663331 20663643 -24243927 - L1PA16 LINE L1 -453 5713 5466 377 319 67 0 chr21 20663689 20663808 -24243762 - MIR SINE MIR -133 129 3 744 283 90 20 chr21 20663885 20664242 -24243328 + LTR16A1 LTR ERVL 76 457 0 25 31 0 0 chr21 20664532 20664564 -24243006 + AT_rich Low_complexity Low_complexity 1 32 0 926 198 0 0 chr21 20664650 20664812 -24242758 + AluJb SINE Alu 134 295 -17 23 33 0 0 chr21 20665206 20665236 -24242334 + AT_rich Low_complexity Low_complexity 1 30 0 676 162 59 37 chr21 20665448 20665546 -24242024 - LTR64 LTR ERVK 0 558 455 3942 107 0 0 chr21 20665546 20666100 -24241470 - MER41A LTR ERV1 0 554 1 676 162 59 37 chr21 20666100 20666137 -24241433 - LTR64 LTR ERVK -103 455 420 339 191 107 0 chr21 20666128 20666212 -24241358 + LTR64 LTR ERVK 448 540 -18 * 605 283 57 11 chr21 20670334 20670511 -24237059 + MER5A DNA MER1_type 3 187 -2 1985 142 0 0 chr21 20670629 20670925 -24236645 - AluSx SINE Alu -16 296 1 396 295 0 0 chr21 20670937 20671076 -24236494 + L1MEc LINE L1 1918 2056 -4340 966 134 0 55 chr21 20671079 20671243 -24236327 - AluSq SINE Alu -158 155 1 680 223 8 0 chr21 20671444 20671604 -24235966 + FLAM_A SINE Alu 1 161 0 1166 167 0 85 chr21 20671614 20671860 -24235710 + AluJb SINE Alu 43 267 -45 417 325 101 37 chr21 20672474 20672822 -24234748 - ERVL LTR ERVL -629 5135 4766 442 333 77 15 chr21 20673076 20673271 -24234299 - ERVL LTR ERVL -1309 4455 4249 1018 303 40 16 chr21 20673851 20674224 -24233346 - LTR40a LTR ERVL -2 517 136 2274 99 0 13 chr21 20674282 20674594 -24232976 - AluY SINE Alu -3 308 1 738 303 50 21 chr21 20674594 20674970 -24232600 + L1ME LINE L1 5262 5648 -516 23 33 0 0 chr21 20675068 20675098 -24232472 + AT_rich Low_complexity Low_complexity 1 30 0 183 139 0 0 chr21 20675116 20675152 -24232418 + (GA)n Simple_repeat Simple_repeat 2 37 0 297 342 0 0 chr21 20675156 20675232 -24232338 + MER5B DNA MER1_type 50 125 -53 216 238 0 0 chr21 20675501 20675543 -24232027 + MIR SINE MIR 203 244 -18 341 258 43 0 chr21 20675554 20675647 -24231923 - L1MC4 LINE L1 -1331 6711 6615 2179 98 3 0 chr21 20675647 20675933 -24231637 - AluSq SINE Alu -26 287 1 25 0 0 0 chr21 20676054 20676079 -24231491 + AT_rich Low_complexity Low_complexity 1 25 0 242 337 115 51 chr21 20677745 20678119 -24229451 - L2 LINE L2 -683 2631 2234 388 251 75 37 chr21 20678262 20678449 -24229121 - MLT1J2 LTR MaLR -215 235 42 6883 65 2 0 chr21 20678528 20679754 -24227816 - L1PA7 LINE L1 -5 6149 4922 258 349 201 17 chr21 20680010 20680417 -24227153 - L2 LINE L2 -1325 1989 1508 278 265 68 0 chr21 20680508 20680625 -24226945 - L2 LINE L2 -2399 915 791 40 49 0 0 chr21 20681328 20681389 -24226181 + AT_rich Low_complexity Low_complexity 1 61 0 2258 113 0 0 chr21 20682157 20682468 -24225102 - AluSq SINE Alu -2 311 1 1284 81 2 7 chr21 20682673 20683034 -24224536 + (TTCC)n Simple_repeat Simple_repeat 2 538 0 23 54 0 0 chr21 20683183 20683220 -24224350 + AT_rich Low_complexity Low_complexity 1 37 0 727 160 26 19 chr21 20683222 20683378 -24224192 + L1MA8 LINE L1 6133 6289 -2 399 297 55 62 chr21 20683466 20683739 -24223831 - L1ME LINE L1 -393 5777 5507 419 275 63 94 chr21 20683865 20684247 -24223323 - L1ME LINE L1 -759 5387 5018 559 350 72 25 chr21 20684494 20684897 -24222673 + L2 LINE L2 1614 2035 -1279 425 359 166 20 chr21 20684889 20685051 -24222519 - L2 LINE L2 -589 2725 2588 * 248 53 26 0 chr21 20685051 20685089 -24222481 + (CA)n Simple_repeat Simple_repeat 2 40 0 425 359 166 20 chr21 20685089 20685758 -24221812 - L2 LINE L2 -726 2588 1773 271 251 140 18 chr21 20687532 20687703 -24219867 + L2 LINE L2 1980 2171 -1143 198 0 0 0 chr21 20687789 20687811 -24219759 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 234 0 0 0 chr21 20687810 20687836 -24219734 + (GA)n Simple_repeat Simple_repeat 2 27 0 212 232 24 12 chr21 20687836 20687918 -24219652 + (TA)n Simple_repeat Simple_repeat 1 83 0 236 331 142 31 chr21 20687934 20688294 -24219276 - HAL1 LINE L1 -1997 510 111 250 150 17 17 chr21 20688360 20688420 -24219150 + (TA)n Simple_repeat Simple_repeat 1 60 0 2514 223 10 6 chr21 20688423 20688921 -24218649 - MLT2B1 LTR ERVL -20 500 1 201 366 69 15 chr21 20688929 20689060 -24218510 + L2 LINE L2 2505 2642 -672 2080 167 35 48 chr21 20689434 20689991 -24217579 + MLT2A2 LTR ERVL 1 554 0 217 358 122 0 chr21 20690022 20690145 -24217425 + L2 LINE L2 3140 3277 -36 496 370 47 19 chr21 20690760 20691377 -24216193 + HAL1 LINE L1 417 1050 -1457 472 301 29 8 chr21 20691425 20691664 -24215906 + HAL1 LINE L1 1944 2187 -320 237 172 17 0 chr21 20691772 20691830 -24215740 + (TA)n Simple_repeat Simple_repeat 1 59 0 2056 110 7 0 chr21 20691831 20692112 -24215458 - AluSc SINE Alu -26 283 1 2462 46 0 3 chr21 20692508 20692811 -24214759 - AluY SINE Alu -9 302 1 195 129 0 0 chr21 20693527 20693558 -24214012 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 3840 178 30 24 chr21 20693562 20693858 -24213712 - L1PB4 LINE L1 -13 6143 5850 182 36 0 36 chr21 20693858 20693886 -24213684 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1652 178 0 14 chr21 20693889 20694175 -24213395 - AluJo SINE Alu -30 282 1 3840 178 30 24 chr21 20694175 20694700 -24212870 - L1PB4 LINE L1 -307 5849 5313 1878 154 117 101 chr21 20694700 20695076 -24212494 - MER1B DNA MER1_type 0 339 1 4741 206 27 63 chr21 20695078 20696054 -24211516 - L1PB4 LINE L1 -828 5318 4403 2025 140 0 3 chr21 20696054 20696354 -24211216 - AluSx SINE Alu -13 299 1 4741 206 27 63 chr21 20696354 20696729 -24210841 - L1PB4 LINE L1 -1743 4403 4016 662 314 17 16 chr21 20696718 20696997 -24210573 - L1M2 LINE L1 -6568 281 2 * 225 256 81 12 chr21 20697359 20697445 -24210125 + HAL1 LINE L1 1197 1288 -1219 1935 97 0 19 chr21 20697448 20697717 -24209853 + AluSg SINE Alu 1 264 -46 249 341 71 28 chr21 20698924 20699106 -24208464 + HAL1 LINE L1 1559 1748 -759 493 110 122 0 chr21 20699324 20699406 -24208164 - AluSg1 SINE Alu -178 131 40 1074 153 0 0 chr21 20699406 20699583 -24207987 + AluSg/x SINE Alu 129 305 -7 396 269 25 119 chr21 20699705 20699991 -24207579 + L1MDa LINE L1 36 294 -6246 699 307 66 24 chr21 20700854 20701186 -24206384 + L1MDa LINE L1 784 1129 -5414 1607 238 55 50 chr21 20701210 20701852 -24205718 + L1MDa LINE L1 1200 1844 -4696 908 255 92 15 chr21 20701877 20702356 -24205214 + L1MDa LINE L1 1947 2462 -4078 * 1889 178 0 24 chr21 20702349 20702664 -24204906 + L1MC1 LINE L1 5272 5578 -755 2657 84 19 14 chr21 20702664 20703035 -24204535 + THE1C LTR MaLR 3 375 0 1889 178 0 24 chr21 20703035 20703089 -24204481 + L1MC1 LINE L1 5578 5632 -701 3032 156 15 42 chr21 20703094 20703256 -24204314 + L1MC1 LINE L1 5730 5895 -438 2426 58 0 0 chr21 20703256 20703550 -24204020 + AluY SINE Alu 1 294 -17 3032 156 15 42 chr21 20703550 20703990 -24203580 + L1MC1 LINE L1 5895 6316 -17 2128 246 91 30 chr21 20704051 20704824 -24202746 + L1MD1 LINE L1 5262 6081 -161 194 208 0 75 chr21 20704854 20704907 -24202663 + L2 LINE L2 3256 3304 -9 201 138 0 0 chr21 20705320 20705349 -24202221 + (CATA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr21 20705393 20705424 -24202146 + AT_rich Low_complexity Low_complexity 1 31 0 1465 221 63 23 chr21 20705628 20706022 -24201548 + MLT2D LTR ERVL 1 410 -4 186 256 124 50 chr21 20706406 20706527 -24201043 - MIR SINE MIR -10 252 123 689 293 21 25 chr21 20707027 20707266 -24200304 + MIR SINE MIR 1 238 -24 27 49 0 0 chr21 20707296 20707337 -24200233 + AT_rich Low_complexity Low_complexity 1 41 0 6527 210 18 13 chr21 20708005 20709307 -24198263 + L1M1 LINE L1 11 1319 -6246 1043 69 0 0 chr21 20709346 20709477 -24198093 + L1PA10 LINE L1 6024 6154 -14 5983 224 35 11 chr21 20709482 20711103 -24196467 + L1MDa LINE L1 3125 4785 -1755 462 283 40 12 chr21 20711473 20711646 -24195924 - L1MEc LINE L1 -4543 1853 1676 1211 235 34 34 chr21 20711648 20711741 -24195829 + MLT1A2 LTR MaLR 4 96 -278 12219 166 42 10 chr21 20711741 20712355 -24195215 + Tigger1 DNA MER2_type 1 594 -1824 2247 107 3 0 chr21 20712355 20712664 -24194906 + AluSg SINE Alu 1 310 0 12219 166 42 10 chr21 20712664 20714392 -24193178 + Tigger1 DNA MER2_type 594 2418 0 1211 235 34 34 chr21 20714392 20714621 -24192949 + MLT1A2 LTR MaLR 95 326 -48 261 0 0 0 chr21 20714621 20714650 -24192920 + (A)n Simple_repeat Simple_repeat 1 29 0 277 343 74 9 chr21 20714677 20714893 -24192677 - L1MEc LINE L1 -5121 1275 1046 5838 124 22 18 chr21 20714911 20716026 -24191544 - L1PA10 LINE L1 -5 6163 5061 2259 157 0 0 chr21 20716021 20716397 -24191173 + L1PA10 LINE L1 4656 5031 -1115 * 2181 109 0 31 chr21 20716426 20716746 -24190824 - AluSg SINE Alu 0 310 1 358 264 91 58 chr21 20716746 20716954 -24190616 - L1MEc LINE L1 -5392 1004 790 2030 159 19 3 chr21 20717885 20718257 -24189313 - L1MA4 LINE L1 -19 6281 5904 235 288 0 0 chr21 20718270 20718329 -24189241 + MER112 DNA MER1_type 191 249 -11 955 192 143 29 chr21 20718588 20718895 -24188675 - L1MA8 LINE L1 0 6291 5950 208 319 75 0 chr21 20719918 20720012 -24187558 - MIR SINE MIR -28 234 134 1725 146 0 15 chr21 20720573 20720886 -24186684 + AluSx SINE Alu 14 322 0 25 95 0 0 chr21 20721701 20721775 -24185795 + AT_rich Low_complexity Low_complexity 1 74 0 24 67 0 0 chr21 20721785 20721830 -24185740 + AT_rich Low_complexity Low_complexity 1 45 0 4067 189 34 39 chr21 20721844 20722702 -24184868 + L1MB3 LINE L1 5195 6056 -127 2037 122 0 10 chr21 20722702 20722997 -24184573 + AluSx SINE Alu 1 292 -20 4067 189 34 39 chr21 20722997 20723122 -24184448 + L1MB3 LINE L1 6056 6180 -3 568 214 173 6 chr21 20723131 20723166 -24184404 + AluJb SINE Alu 86 114 -198 189 0 0 0 chr21 20723166 20723187 -24184383 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 568 214 173 6 chr21 20723187 20723319 -24184251 + AluJb SINE Alu 114 281 -31 306 0 0 0 chr21 20723319 20723353 -24184217 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 20723947 20723969 -24183601 + AT_rich Low_complexity Low_complexity 1 22 0 216 220 20 0 chr21 20724143 20724193 -24183377 + (TATG)n Simple_repeat Simple_repeat 3 53 0 21 71 0 0 chr21 20724236 20724278 -24183292 + AT_rich Low_complexity Low_complexity 1 42 0 29849 119 13 60 chr21 20724344 20730802 -24176768 + L1PA7 LINE L1 9 6150 -4 2089 135 0 0 chr21 20730895 20731192 -24176378 - AluSc SINE Alu -12 297 1 27 29 0 0 chr21 20731204 20731238 -24176332 + AT_rich Low_complexity Low_complexity 1 34 0 33 66 0 0 chr21 20731277 20731338 -24176232 + AT_rich Low_complexity Low_complexity 1 61 0 1643 166 3 45 chr21 20731417 20731731 -24175839 - AluJb SINE Alu -11 301 1 262 288 14 0 chr21 20733139 20733212 -24174358 + MER5B DNA MER1_type 105 178 0 2234 97 3 0 chr21 20735230 20735529 -24172041 - AluSp SINE Alu -13 300 1 203 184 0 0 chr21 20735547 20735585 -24171985 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 571 320 25 38 chr21 20735809 20736128 -24171442 + MLT1I LTR MaLR 29 343 -66 232 376 0 0 chr21 20736211 20736304 -24171266 - L2 LINE L2 -9 3304 3212 318 347 138 33 chr21 20736578 20737004 -24170566 - L2 LINE L2 -469 2845 2375 26 30 0 0 chr21 20737304 20737337 -24170233 + AT_rich Low_complexity Low_complexity 1 33 0 1992 125 4 0 chr21 20737804 20738085 -24169485 - AluSx SINE Alu -22 290 9 5263 196 26 21 chr21 20738837 20740984 -24166586 - L1PA16 LINE L1 -8 6158 4005 290 276 14 76 chr21 20741184 20741394 -24166176 - L1M4 LINE L1 -1473 4673 4477 186 43 0 0 chr21 20741553 20741576 -24165994 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2184 109 0 3 chr21 20741852 20742156 -24165414 + AluSc SINE Alu 1 303 -6 2244 94 0 3 chr21 20742489 20742788 -24164782 + AluSq SINE Alu 1 298 -15 40 37 0 0 chr21 20744227 20744281 -24163289 + AT_rich Low_complexity Low_complexity 1 54 0 226 260 39 10 chr21 20744749 20744853 -24162717 + (CATATA)n Simple_repeat Simple_repeat 3 109 0 1830 179 0 0 chr21 20745116 20745428 -24162142 - AluJb SINE Alu 0 312 1 2013 112 0 18 chr21 20745665 20745974 -24161596 - AluSg SINE Alu 0 304 1 22 56 0 0 chr21 20746185 20746221 -24161349 + AT_rich Low_complexity Low_complexity 1 36 0 777 291 64 8 chr21 20746274 20746631 -24160939 - MER34B LTR ERV1 -6 559 183 271 250 15 62 chr21 20746657 20746784 -24160786 - MER34C LTR ERV1 -421 136 1 591 249 24 28 chr21 20747868 20748042 -24159528 + MER61D LTR ERV1 234 491 -10 25 83 0 0 chr21 20748418 20748478 -24159092 + AT_rich Low_complexity Low_complexity 1 60 0 202 283 17 0 chr21 20749205 20749265 -24158305 + GA-rich Low_complexity Low_complexity 1 61 0 1774 141 17 0 chr21 20749420 20749711 -24157859 + AluSg SINE Alu 1 296 -14 21 112 0 0 chr21 20750768 20750866 -24156704 + AT_rich Low_complexity Low_complexity 1 98 0 1451 88 0 21 chr21 20750895 20751088 -24156482 - AluSg SINE Alu -106 204 16 7852 114 42 7 chr21 20751090 20752267 -24155303 + MER61A-int LTR ERV1 4000 5217 0 1586 208 14 26 chr21 20752267 20752614 -24154956 + MER61A LTR ERV1 1 343 0 250 309 124 17 chr21 20752879 20753057 -24154513 + L1MEc LINE L1 671 867 -5529 732 275 78 50 chr21 20753074 20753753 -24153817 + L1MEc LINE L1 1482 2179 -4217 3921 162 42 19 chr21 20753822 20753874 -24153696 + L1PB4 LINE L1 5393 5442 -714 2154 115 10 13 chr21 20753874 20754179 -24153391 + AluSg SINE Alu 1 304 -6 3921 162 42 19 chr21 20754179 20754872 -24152698 + L1PB4 LINE L1 5442 6155 -1 360 296 80 5 chr21 20754885 20755098 -24152472 + L1MEc LINE L1 2256 2484 -3912 244 286 43 43 chr21 20755100 20755240 -24152330 + L1MEc LINE L1 4049 4188 -2027 564 259 7 0 chr21 20755279 20755426 -24152144 - Tigger6 DNA MER2_type -1198 399 252 1856 227 120 23 chr21 20755669 20756311 -24151259 - Tigger6a DNA MER2_type -128 955 252 1420 220 57 0 chr21 20756479 20756797 -24150773 + MER1B DNA MER1_type 1 336 -1 305 313 23 15 chr21 20756983 20757114 -24150456 + L1 LINE L1 3682 3813 -2333 1036 278 138 27 chr21 20757208 20758244 -24149326 + L1M4 LINE L1 2841 3991 -2155 590 233 15 55 chr21 20758252 20758454 -24149116 - L1M1 LINE L1 -4673 2892 2699 229 133 22 0 chr21 20758702 20758747 -24148823 + (TAA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr21 20758789 20758811 -24148759 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr21 20758930 20758985 -24148585 + AT_rich Low_complexity Low_complexity 1 55 0 9367 45 6 0 chr21 20759045 20760986 -24146584 - L1PA5 LINE L1 -5 6149 4200 996 50 0 0 chr21 20760986 20761107 -24146463 + L1PA5 LINE L1 4094 4214 -1932 2212 109 0 16 chr21 20761657 20761969 -24145601 + AluSg SINE Alu 1 307 -3 207 298 0 0 chr21 20762055 20762102 -24145468 - MIR SINE MIR -139 69 23 2074 180 70 5 chr21 20763075 20763475 -24144095 + MSTB LTR MaLR 1 426 0 1582 208 64 33 chr21 20763764 20764160 -24143410 + MLT1C LTR MaLR 1 414 -53 2081 110 0 10 chr21 20764160 20764459 -24143111 - AluSg1 SINE Alu -1 308 13 1582 208 64 33 chr21 20764459 20764515 -24143055 + MLT1C LTR MaLR 414 467 0 21 0 0 0 chr21 20764612 20764633 -24142937 + AT_rich Low_complexity Low_complexity 1 21 0 729 314 128 29 chr21 20764908 20765363 -24142207 + L2 LINE L2 2199 2698 -616 500 319 27 2 chr21 20765363 20765537 -24142033 + L1MDa LINE L1 1 301 -6242 755 307 67 38 chr21 20765583 20766164 -24141406 + L1MDa LINE L1 387 1117 -5426 * 1938 306 40 28 chr21 20766159 20766851 -24140719 + L1PA15 LINE L1 1 701 -6086 11533 232 34 32 chr21 20766882 20771361 -24136209 + L1PA15 LINE L1 1261 5802 -1014 2380 81 0 0 chr21 20771361 20771657 -24135913 - AluY SINE Alu -15 296 1 11533 232 34 32 chr21 20771657 20772652 -24134918 + L1PA15 LINE L1 5802 6794 -22 856 227 37 11 chr21 20772665 20772934 -24134636 + L1MDa LINE L1 1082 1357 -5186 730 281 42 56 chr21 20772913 20773322 -24134248 + L1MDa LINE L1 3088 3490 -3050 * 1496 263 95 40 chr21 20773323 20773601 -24133969 + L1MDa LINE L1 4428 4689 -1851 2019 179 30 39 chr21 20773601 20774037 -24133533 + Tigger2a DNA MER2_type 2 433 -1 1496 263 95 40 chr21 20774037 20774508 -24133062 + L1MDa LINE L1 4689 5218 -1322 1482 224 29 62 chr21 20774775 20775191 -24132379 + MLT-int LTR MaLR 1318 1719 -16 199 349 39 23 chr21 20775638 20775767 -24131803 + L2 LINE L2 2918 3048 -265 1494 163 18 25 chr21 20775981 20776263 -24131307 + AluJb SINE Alu 17 296 -16 2280 191 22 22 chr21 20776786 20776869 -24130701 + LOR1b LTR ERV1 1 83 -378 2386 62 0 0 chr21 20776869 20777161 -24130409 + AluY SINE Alu 1 292 -19 2280 191 22 22 chr21 20777161 20777538 -24130032 + LOR1b LTR ERV1 82 461 0 1915 113 7 45 chr21 20777630 20777950 -24129620 - AluSx SINE Alu 0 309 1 23 54 0 0 chr21 20778398 20778435 -24129135 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 20780561 20780591 -24126979 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 20781520 20781546 -24126024 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr21 20781589 20781610 -24125960 + AT_rich Low_complexity Low_complexity 1 21 0 196 328 16 16 chr21 20782233 20782297 -24125273 - L2 LINE L2 -197 3075 3012 22 35 0 0 chr21 20782426 20782455 -24125115 + AT_rich Low_complexity Low_complexity 1 29 0 186 71 0 0 chr21 20782455 20782483 -24125087 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2077 91 0 11 chr21 20782483 20782768 -24124802 - AluSc SINE Alu -27 282 1 727 125 75 0 chr21 20782850 20782970 -24124600 + L1PB4 LINE L1 6015 6143 -13 496 215 33 0 chr21 20782970 20783090 -24124480 - L1MC2 LINE L1 0 6344 6220 316 231 34 0 chr21 20783691 20783838 -24123732 + (TA)n Simple_repeat Simple_repeat 1 152 0 2168 129 0 0 chr21 20784081 20784391 -24123179 - AluSg SINE Alu 0 310 1 362 320 0 0 chr21 20784830 20784933 -24122637 - MER5A DNA MER1_type -84 105 3 267 79 0 0 chr21 20784998 20785036 -24122534 + (CA)n Simple_repeat Simple_repeat 2 39 0 226 296 28 0 chr21 20785588 20785696 -24121874 + T-rich Low_complexity Low_complexity 2 112 0 225 0 0 0 chr21 20786579 20786604 -24120966 + (T)n Simple_repeat Simple_repeat 1 25 0 522 163 0 0 chr21 20787256 20787354 -24120216 + (TA)n Simple_repeat Simple_repeat 1 98 0 21 57 0 0 chr21 20788088 20788123 -24119447 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 20788227 20788248 -24119322 + AT_rich Low_complexity Low_complexity 1 21 0 296 252 35 9 chr21 20788587 20788702 -24118868 + L1MD1 LINE L1 5797 5914 -328 5166 137 19 39 chr21 20788862 20789674 -24117896 - L1PA13 LINE L1 -5 6158 5366 2220 115 0 3 chr21 20789674 20789987 -24117583 - AluSx SINE Alu 0 312 1 5166 137 19 39 chr21 20789987 20790158 -24117412 - L1PA13 LINE L1 -797 5366 5193 4499 202 7 26 chr21 20790159 20790803 -24116767 - L1PA13 LINE L1 -1329 4817 4199 2637 58 0 0 chr21 20790803 20791113 -24116457 - AluY SINE Alu -1 310 1 4499 202 7 26 chr21 20791113 20791509 -24116061 - L1PA13 LINE L1 -1947 4199 3797 2548 220 108 70 chr21 20792418 20793477 -24114093 + LTR28 LTR ERV1 1 1726 -29 1038 157 20 5 chr21 20793505 20793555 -24114015 + L1MA9 LINE L1 6106 6154 -158 282 29 0 0 chr21 20793555 20793590 -24113980 + (CA)n Simple_repeat Simple_repeat 1 35 0 1038 157 20 5 chr21 20793590 20793736 -24113834 + L1MA9 LINE L1 6154 6305 -7 355 38 38 0 chr21 20793849 20793902 -24113668 + (TA)n Simple_repeat Simple_repeat 2 56 0 2220 92 0 25 chr21 20793902 20794217 -24113353 - AluY SINE Alu -4 307 1 855 80 0 0 chr21 20794720 20794832 -24112738 - AluY SINE Alu -11 300 189 2301 96 3 0 chr21 20795295 20795596 -24111974 - AluSc SINE Alu -7 302 1 582 204 37 0 chr21 20796907 20797015 -24110555 + MSTD LTR MaLR 1 112 -316 759 238 52 0 chr21 20797017 20797189 -24110381 + MSTD LTR MaLR 216 396 0 2033 106 27 10 chr21 20797637 20797930 -24109640 - AluSg SINE Alu -12 298 1 25 51 0 0 chr21 20797972 20798011 -24109559 + AT_rich Low_complexity Low_complexity 1 39 0 37 39 0 0 chr21 20798857 20798908 -24108662 + AT_rich Low_complexity Low_complexity 1 51 0 2368 70 0 0 chr21 20798991 20799290 -24108280 - AluY SINE Alu -12 299 1 320 373 95 51 chr21 20799297 20799865 -24107705 + L1MEd LINE L1 95 687 -5432 428 271 53 23 chr21 20799915 20800048 -24107522 - L2 LINE L2 -9 3304 3168 2306 214 16 14 chr21 20800098 20800593 -24106977 - MLT2B2 LTR ERVL -7 508 13 2500 34 0 3 chr21 20800593 20800888 -24106682 + AluY SINE Alu 1 294 -17 951 212 11 0 chr21 20800905 20801094 -24106476 - ERVL-B2 LTR ERVL 0 5764 5574 472 138 12 12 chr21 20801140 20801220 -24106350 - MLT2B2 LTR ERVL -431 84 5 250 145 32 16 chr21 20801370 20801432 -24106138 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 * 260 210 16 0 chr21 20801390 20801452 -24106118 + GA-rich Low_complexity Low_complexity 2 64 0 235 253 44 33 chr21 20801793 20801884 -24105686 + HAL1 LINE L1 1503 1594 -913 300 264 108 68 chr21 20802826 20803076 -24104494 + L1MEd LINE L1 2114 2373 -3756 2149 130 0 0 chr21 20803092 20803399 -24104171 + AluSc SINE Alu 1 307 -2 1752 118 0 8 chr21 20803781 20804026 -24103544 - AluSq SINE Alu -70 243 1 313 357 57 0 chr21 20804104 20804244 -24103326 + L1M4 LINE L1 3998 4145 -2001 22 0 0 0 chr21 20804429 20804451 -24103119 + AT_rich Low_complexity Low_complexity 1 22 0 1558 199 3 13 chr21 20804894 20805196 -24102374 - AluJb SINE Alu -8 304 6 929 96 15 0 chr21 20806066 20806202 -24101368 - L1MA1 LINE L1 -4 6298 6161 794 257 9 18 chr21 20806452 20806674 -24100896 - LTR64 LTR ERVK -290 268 49 282 254 14 0 chr21 20806675 20806746 -24100824 - LTR64 LTR ERVK -485 73 2 30 0 0 0 chr21 20806836 20806866 -24100704 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr21 20806945 20806978 -24100592 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr21 20807090 20807111 -24100459 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 1599 225 102 12 chr21 20807157 20807588 -24099982 + MLT1D LTR MaLR 23 492 -13 23 0 0 0 chr21 20807959 20807982 -24099588 + AT_rich Low_complexity Low_complexity 1 23 0 38 51 0 0 chr21 20808622 20808681 -24098889 + AT_rich Low_complexity Low_complexity 1 59 0 1259 182 79 58 chr21 20808818 20809147 -24098423 - MER44D DNA MER2_type 0 609 4 3742 135 13 88 chr21 20809345 20809525 -24098045 + MER50 LTR ERV1 1 193 -541 2309 96 0 0 chr21 20809525 20809827 -24097743 + AluSg1 SINE Alu 1 302 -7 3742 135 13 88 chr21 20809827 20810261 -24097309 + MER50 LTR ERV1 193 544 -190 2377 84 3 0 chr21 20810261 20810569 -24097001 - AluSc SINE Alu 0 309 1 3742 135 13 88 chr21 20810569 20810747 -24096823 + MER50 LTR ERV1 544 734 0 2042 133 0 7 chr21 20811390 20811692 -24095878 - AluSx SINE Alu -12 300 1 2097 117 0 0 chr21 20812419 20812710 -24094860 + AluSg1 SINE Alu 1 291 -18 368 240 70 0 chr21 20813222 20813322 -24094248 + MER5A DNA MER1_type 4 110 -79 329 311 90 36 chr21 20814692 20815053 -24092517 + L1P4 LINE L1 5401 5801 -360 21 0 0 0 chr21 20815106 20815127 -24092443 + AT_rich Low_complexity Low_complexity 1 21 0 2275 76 21 0 chr21 20815139 20815430 -24092140 - AluY SINE Alu -14 297 1 1358 183 3 54 chr21 20815430 20815725 -24091845 - AluJb SINE Alu -32 280 1 22 56 0 0 chr21 20816608 20816644 -24090926 + AT_rich Low_complexity Low_complexity 1 36 0 2884 137 40 2 chr21 20816715 20817190 -24090380 + LOR1a LTR ERV1 1 493 -4 3475 217 102 64 chr21 20818006 20818797 -24088773 + Charlie1a DNA MER1_type 53 919 -1842 2113 115 0 40 chr21 20818797 20819120 -24088450 - AluSx SINE Alu -2 310 1 3475 217 102 64 chr21 20819120 20819674 -24087896 + Charlie1a DNA MER1_type 919 1450 -5 2059 152 0 0 chr21 20820024 20820333 -24087237 + AluSg SINE Alu 1 309 -1 278 290 71 39 chr21 20820625 20820780 -24086790 - L2 LINE L2 -2471 843 684 573 243 37 7 chr21 20821143 20821279 -24086291 - MER45A DNA AcHobo -38 140 1 2462 141 0 5 chr21 20822020 20822397 -24085173 - THE1C LTR MaLR 0 375 1 4540 122 20 16 chr21 20823501 20823864 -24083706 - L1PB1 LINE L1 -5 6146 5786 2117 122 17 0 chr21 20823864 20824160 -24083410 - AluSx SINE Alu -11 301 1 4540 122 20 16 chr21 20824160 20824543 -24083027 - L1PB1 LINE L1 -365 5786 5397 2118 231 6 0 chr21 20824535 20825058 -24082512 + L1M LINE L1 4852 5377 -786 * 1183 179 4 26 chr21 20825058 20825336 -24082234 - THE1A LTR MaLR -2 353 48 1433 233 53 6 chr21 20825407 20825725 -24081845 - MLT1C LTR MaLR 0 467 135 547 222 94 9 chr21 20825728 20825912 -24081658 - MLT1C LTR MaLR -216 158 1 297 294 22 22 chr21 20827571 20827663 -24079907 - MIR SINE MIR -32 230 139 1793 163 0 43 chr21 20828357 20828683 -24078887 + AluSx SINE Alu 1 312 0 570 126 0 0 chr21 20828713 20828800 -24078770 - Alu SINE Alu -6 304 218 4162 155 68 18 chr21 20828801 20830187 -24077383 + pTR5 LTR ERV1 743 2605 -1 840 73 81 8 chr21 20830188 20830312 -24077258 + LTR12 LTR ERV1 582 714 0 1526 120 0 22 chr21 20830312 20830537 -24077033 - AluSc SINE Alu -89 220 1 35 41 0 0 chr21 20831114 20831163 -24076407 + AT_rich Low_complexity Low_complexity 1 49 0 2853 187 60 42 chr21 20831173 20831885 -24075685 - LTR8A LTR ERV1 0 727 3 4834 82 34 7 chr21 20832110 20832782 -24074788 + LTR8 LTR ERV1 2 691 0 1683 190 110 19 chr21 20832805 20833219 -24074351 - MER61C LTR ERV1 0 434 1 387 0 0 0 chr21 20833723 20833766 -24073804 + (TA)n Simple_repeat Simple_repeat 2 44 0 25 51 0 0 chr21 20834506 20834545 -24073025 + AT_rich Low_complexity Low_complexity 1 39 0 1500 203 68 22 chr21 20835141 20835511 -24072059 + MLT1B LTR MaLR 2 388 -2 592 318 134 4 chr21 20835846 20836107 -24071463 - L2 LINE L2 -5 3308 3014 523 236 6 28 chr21 20836664 20836842 -24070728 + L1MA4A LINE L1 5949 6122 -181 358 211 0 0 chr21 20836852 20836923 -24070647 + L1MA4A LINE L1 6195 6265 -38 26 0 0 0 chr21 20836937 20836963 -24070607 + AT_rich Low_complexity Low_complexity 1 26 0 12250 124 102 71 chr21 20836974 20837548 -24070022 - MER4A-int LTR ERV1 -367 6173 5618 2104 119 0 31 chr21 20837548 20837867 -24069703 + AluSc SINE Alu 1 309 0 12250 124 102 71 chr21 20837867 20838870 -24068700 - MER4A-int LTR ERV1 -922 5618 4648 2105 100 0 27 chr21 20838870 20839170 -24068400 + AluSx SINE Alu 1 292 -20 12250 124 102 71 chr21 20839170 20841194 -24066376 - MER4A-int LTR ERV1 -1892 4648 988 784 118 0 16 chr21 20841192 20841319 -24066251 - MER4A-int LTR ERV1 -4976 1622 1498 * 510 124 11 22 chr21 20841321 20841410 -24066160 - MER4A-int LTR ERV1 -5506 1092 1005 * 1803 141 11 7 chr21 20841396 20841780 -24065790 - MER4A-int LTR ERV1 -5997 601 174 516 75 15 0 chr21 20841782 20841849 -24065721 - MER4A-int LTR ERV1 -6530 68 1 1628 146 25 55 chr21 20841852 20842208 -24065362 - MER4A LTR ERV1 0 664 261 572 133 10 10 chr21 20842208 20842306 -24065264 - MER4A LTR ERV1 -566 98 1 1873 123 0 0 chr21 20842974 20843234 -24064336 + AluSc SINE Alu 38 297 -12 22 70 0 0 chr21 20844155 20844198 -24063372 + AT_rich Low_complexity Low_complexity 1 43 0 194 392 10 10 chr21 20844346 20844448 -24063122 - L3 LINE CR1 -417 1160 1059 26 64 0 0 chr21 20844597 20844644 -24062926 + AT_rich Low_complexity Low_complexity 1 47 0 1585 102 37 4 chr21 20844978 20845223 -24062347 + L1PA13 LINE L1 5905 6157 -6 2047 166 31 56 chr21 20845512 20845957 -24061613 - Tigger2a DNA MER2_type 0 434 1 2433 69 3 0 chr21 20846041 20846346 -24061224 + AluY SINE Alu 1 306 -5 576 61 0 24 chr21 20847208 20847290 -24060280 - L1PA6 LINE L1 -6 6148 6069 295 78 108 0 chr21 20847558 20847687 -24059883 + (TA)n Simple_repeat Simple_repeat 1 143 0 356 134 58 41 chr21 20847696 20847867 -24059703 + (TTATA)n Simple_repeat Simple_repeat 4 177 0 23 33 0 0 chr21 20847872 20847902 -24059668 + AT_rich Low_complexity Low_complexity 1 30 0 693 220 14 7 chr21 20848836 20848977 -24058593 + FAM SINE Alu 28 169 -16 207 222 22 0 chr21 20848977 20849022 -24058548 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1323 240 25 56 chr21 20849313 20849792 -24057778 - MLT1C LTR MaLR -3 464 1 22 0 0 0 chr21 20850055 20850077 -24057493 + AT_rich Low_complexity Low_complexity 1 22 0 1005 341 82 16 chr21 20850836 20851455 -24056115 - L2 LINE L2 -190 3123 2476 203 244 0 0 chr21 20851457 20851502 -24056068 + (TG)n Simple_repeat Simple_repeat 2 46 0 243 251 53 144 chr21 20851515 20851702 -24055868 - L2 LINE L2 -832 2482 2313 1784 146 0 28 chr21 20852270 20852586 -24054984 + AluSg SINE Alu 1 308 0 2148 108 7 13 chr21 20853418 20853724 -24053846 + AluSg SINE Alu 1 304 -6 279 0 0 0 chr21 20853966 20853997 -24053573 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr21 20854099 20854127 -24053443 + AT_rich Low_complexity Low_complexity 1 28 0 225 283 128 33 chr21 20855252 20855432 -24052138 + MLT1H-int LTR MaLR 1506 1702 -33 362 311 63 6 chr21 20855462 20855630 -24051940 + MLT1H LTR MaLR 3 221 -328 2186 120 50 6 chr21 20855654 20856013 -24051557 - THE1C LTR MaLR 0 375 1 228 35 0 0 chr21 20856067 20856096 -24051474 + (GA)n Simple_repeat Simple_repeat 2 30 0 318 221 122 10 chr21 20856239 20856335 -24051235 + MLT1H LTR MaLR 436 589 -6 448 289 11 22 chr21 20857347 20857527 -24050043 + (TA)n Simple_repeat Simple_repeat 2 179 0 294 294 0 0 chr21 20857616 20857718 -24049852 + (TA)n Simple_repeat Simple_repeat 2 103 0 2587 149 0 47 chr21 20857725 20857761 -24049809 - MSTC LTR MaLR -5 423 387 2140 106 7 0 chr21 20857761 20858063 -24049507 + AluSq SINE Alu 1 304 -9 2587 149 0 47 chr21 20858063 20858470 -24049100 - MSTC LTR MaLR -41 387 1 227 268 12 0 chr21 20860367 20860449 -24047121 - L1MC4 LINE L1 -1346 6696 6614 1883 133 7 4 chr21 20860449 20860728 -24046842 - AluSp SINE Alu -33 280 1 1602 203 3 7 chr21 20860733 20861024 -24046546 - AluJb SINE Alu -22 290 1 27 0 0 0 chr21 20861598 20861625 -24045945 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr21 20861798 20861825 -24045745 + AT_rich Low_complexity Low_complexity 1 27 0 5851 197 33 7 chr21 20862012 20864257 -24043313 + L1PA16 LINE L1 3857 6166 0 22 35 0 0 chr21 20864315 20864344 -24043226 + AT_rich Low_complexity Low_complexity 1 29 0 362 341 36 15 chr21 20865357 20865483 -24042087 - MLT1J2 LTR MaLR -171 275 153 450 0 0 0 chr21 20865483 20865533 -24042037 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 362 341 36 15 chr21 20865533 20865671 -24041899 - MLT1J2 LTR MaLR -293 153 5 24 0 0 0 chr21 20866078 20866102 -24041468 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr21 20866243 20866278 -24041292 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2178 82 9 31 chr21 20866453 20866771 -24040799 - AluSq SINE Alu -2 311 1 1155 236 0 8 chr21 20866913 20867176 -24040394 + L1MC3 LINE L1 7510 7770 -15 216 0 0 0 chr21 20867500 20867524 -24040046 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2724 220 36 8 chr21 20868207 20868929 -24038641 - L1 LINE L1 -2830 4735 3994 2211 275 59 25 chr21 20868930 20870106 -24037464 - L1 LINE L1 -4024 3541 2540 * 8928 200 44 10 chr21 20870104 20870484 -24037086 + L1MA6 LINE L1 3294 3660 -2640 378 0 0 0 chr21 20870484 20870526 -24037044 + (CA)n Simple_repeat Simple_repeat 1 42 0 8928 200 44 10 chr21 20870526 20873052 -24034518 + L1MA6 LINE L1 3660 6299 -1 375 304 83 22 chr21 20873096 20873277 -24034293 + LTR16C LTR ERVL 300 491 0 189 0 0 0 chr21 20873548 20873569 -24034001 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr21 20874964 20874987 -24032583 + AT_rich Low_complexity Low_complexity 1 23 0 331 331 72 52 chr21 20875680 20875970 -24031600 - LTR16C LTR ERVL -1 490 195 1399 239 15 0 chr21 20877114 20877377 -24030193 + Tigger7 DNA MER2_type 1 267 -2220 551 149 53 21 chr21 20877375 20877469 -24030101 + Tigger7 DNA MER2_type 2390 2486 -1 * 183 80 0 0 chr21 20878304 20878329 -24029241 + (T)n Simple_repeat Simple_repeat 1 25 0 1484 346 118 55 chr21 20878770 20879124 -24028446 - L2 LINE L2 -383 2931 2601 2092 111 0 14 chr21 20879124 20879421 -24028149 - AluSg SINE Alu -17 293 1 1484 346 118 55 chr21 20879421 20881146 -24026424 - L2 LINE L2 -713 2601 722 366 292 91 57 chr21 20881303 20881512 -24026058 + MLT1H LTR MaLR 88 303 -246 328 267 31 25 chr21 20881562 20881724 -24025846 + MLT1H LTR MaLR 426 545 -4 1203 207 78 7 chr21 20882075 20882233 -24025337 - AluJo SINE Alu -17 295 109 423 0 0 0 chr21 20882233 20882280 -24025290 + (TG)n Simple_repeat Simple_repeat 2 48 0 1203 207 78 7 chr21 20882280 20882392 -24025178 - AluJo SINE Alu -203 109 6 252 315 71 71 chr21 20882568 20882752 -24024818 + MLT1H LTR MaLR 107 290 -259 399 41 0 0 chr21 20882874 20882923 -24024647 + (TG)n Simple_repeat Simple_repeat 2 50 0 264 234 0 0 chr21 20882927 20882991 -24024579 + L1MC4 LINE L1 6640 6703 -1339 * 274 217 0 0 chr21 20882943 20883003 -24024567 - L1MC4 LINE L1 -1335 6707 6648 300 154 0 46 chr21 20883013 20883078 -24024492 - L1MC4 LINE L1 -1339 6703 6642 330 26 0 0 chr21 20883127 20883166 -24024404 + (CA)n Simple_repeat Simple_repeat 2 40 0 227 221 81 12 chr21 20883227 20883313 -24024257 + MLT1G LTR MaLR 497 588 -2 239 73 0 0 chr21 20884621 20884662 -24022908 + Alu SINE Alu 260 300 0 1232 231 51 0 chr21 20885052 20885325 -24022245 + AluJo SINE Alu 1 287 -25 449 135 0 0 chr21 20886767 20886841 -24020729 + MADE1 DNA Mariner 7 80 0 29 28 0 0 chr21 20887540 20887576 -24019994 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr21 20888608 20888652 -24018918 + AT_rich Low_complexity Low_complexity 1 44 0 181 267 93 27 chr21 20888760 20888835 -24018735 - L2 LINE L2 -9 3304 3225 4014 31 2 2 chr21 20889629 20890118 -24017452 - L1PA4 LINE L1 -4 6151 5663 2878 15 0 0 chr21 20890118 20890449 -24017121 + L1PA4 LINE L1 5337 5667 -488 21 0 0 0 chr21 20891401 20891422 -24016148 + AT_rich Low_complexity Low_complexity 1 21 0 234 316 90 7 chr21 20892237 20892392 -24015178 - MIR SINE MIR -44 218 51 180 111 0 0 chr21 20892547 20892574 -24014996 + (GA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr21 20892625 20892646 -24014924 + AT_rich Low_complexity Low_complexity 1 21 0 448 283 28 11 chr21 20892668 20892848 -24014722 - L1ME LINE L1 -364 5757 5575 572 241 74 88 chr21 20892884 20893303 -24014267 + L1M4 LINE L1 2444 2856 -3290 1030 191 123 90 chr21 20893399 20893766 -24013804 - MSTB2 LTR MaLR -64 393 15 21 71 0 0 chr21 20893942 20893984 -24013586 + AT_rich Low_complexity Low_complexity 1 42 0 32 43 0 0 chr21 20894357 20894403 -24013167 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr21 20895357 20895386 -24012184 + AT_rich Low_complexity Low_complexity 1 29 0 1137 223 22 63 chr21 20896099 20896462 -24011108 + L1MA9 LINE L1 5923 6270 -42 21 36 0 0 chr21 20897627 20897655 -24009915 + AT_rich Low_complexity Low_complexity 1 28 0 1905 123 0 14 chr21 20897656 20897941 -24009629 + AluSx SINE Alu 23 303 -9 216 195 0 49 chr21 20898247 20898329 -24009241 + (TTAAA)n Simple_repeat Simple_repeat 3 80 0 22 0 0 0 chr21 20898529 20898551 -24009019 + AT_rich Low_complexity Low_complexity 1 22 0 1141 253 37 15 chr21 20898602 20899010 -24008560 + L1M4 LINE L1 2404 2820 -3326 2359 59 0 13 chr21 20899011 20899317 -24008253 + AluY SINE Alu 1 302 -9 2037 86 3 53 chr21 20899372 20899673 -24007897 + AluY SINE Alu 1 286 -25 269 143 36 0 chr21 20899691 20899747 -24007823 + Alu SINE Alu 245 302 0 480 268 0 0 chr21 20899747 20899885 -24007685 + L1M4 LINE L1 2895 3032 -3114 497 116 41 41 chr21 20899903 20900050 -24007520 + GA-rich Low_complexity Low_complexity 4 150 0 2525 235 32 19 chr21 20900082 20900758 -24006812 + MER76 LTR ERV 1 685 -3 1794 240 19 64 chr21 20900760 20901505 -24006065 + L1M4 LINE L1 3085 3795 -2351 1533 181 89 38 chr21 20901513 20902071 -24005499 - LTR48B LTR ERV1 -8 636 11 838 276 39 34 chr21 20902081 20902255 -24005315 + L1M4 LINE L1 3787 3959 -2187 2056 131 45 28 chr21 20902255 20902613 -24004957 + THE1B LTR MaLR 1 364 0 10980 119 6 1 chr21 20902613 20904186 -24003384 + THE1B-int LTR MaLR 1 1580 0 2185 121 30 30 chr21 20904186 20904550 -24003020 + THE1B LTR MaLR 1 364 0 838 276 39 34 chr21 20904550 20904840 -24002730 + L1M4 LINE L1 3958 4255 -1891 701 114 9 0 chr21 20906268 20906382 -24001188 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 370 209 11 11 chr21 20906383 20906474 -24001096 + CT-rich Low_complexity Low_complexity 2 92 0 648 333 71 37 chr21 20906475 20906856 -24000714 + LTR16C LTR ERVL 97 490 -1 304 286 24 0 chr21 20907311 20907392 -24000178 + MER67A LTR ERV1 1 83 -460 1820 235 29 21 chr21 20907392 20907878 -23999692 + MER67A LTR ERV1 3 527 -16 1560 202 0 19 chr21 20907878 20908195 -23999375 - AluSx SINE Alu -1 311 1 1820 235 29 21 chr21 20908195 20908213 -23999357 + MER67A LTR ERV1 527 543 0 26 50 0 0 chr21 20908253 20908293 -23999277 + AT_rich Low_complexity Low_complexity 1 40 0 514 347 71 32 chr21 20908455 20908898 -23998672 - L2 LINE L2 -253 3060 2607 907 181 7 0 chr21 20909694 20909843 -23997727 + AluSx SINE Alu 3 152 -160 1320 234 115 101 chr21 20909849 20910621 -23996949 + LTR1B LTR ERV1 1 983 -37 267 226 147 10 chr21 20910664 20910766 -23996804 + LTR28 LTR ERV1 905 1020 0 927 164 0 0 chr21 20910766 20910906 -23996664 + AluSx SINE Alu 145 284 -26 1291 242 47 68 chr21 20911072 20911721 -23995849 - L1MEc LINE L1 -3594 2621 1960 1988 109 18 0 chr21 20911721 20911997 -23995573 + AluSp SINE Alu 12 292 -21 1291 242 47 68 chr21 20911997 20912026 -23995544 - L1MEc LINE L1 -4255 1960 1932 2109 128 0 0 chr21 20912026 20912322 -23995248 - AluSx SINE Alu -16 296 1 1291 242 47 68 chr21 20912322 20912628 -23994942 - L1MEc LINE L1 -4283 1932 1704 2462 96 19 16 chr21 20912629 20912992 -23994578 + MLT2A2 LTR ERVL 2 365 -88 386 115 0 0 chr21 20912992 20913053 -23994517 + HERVL-A2 LTR ERVL 13 73 -5581 5083 90 48 0 chr21 20913053 20913755 -23993815 - THE1B-int LTR MaLR -844 736 1 1139 154 51 26 chr21 20913755 20913950 -23993620 - THE1B LTR MaLR 0 364 165 1928 287 68 26 chr21 20913991 20914882 -23992688 - L1MEc LINE L1 -5431 965 37 3336 28 2 0 chr21 20917842 20918238 -23989332 - L1PA3 LINE L1 -1052 5094 4698 7700 22 0 0 chr21 20918238 20919298 -23988272 + L1PA3 LINE L1 5093 6152 -3 643 163 31 16 chr21 20919502 20919631 -23987939 + FLAM_C SINE Alu 1 131 -12 1578 182 31 7 chr21 20920301 20920587 -23986983 - AluJb SINE Alu -19 293 1 1164 246 79 11 chr21 20920733 20921099 -23986471 + MSTD LTR MaLR 1 391 -5 1892 225 60 47 chr21 20921190 20921741 -23985829 - MER89 LTR ERV1 0 559 2 387 311 72 6 chr21 20921947 20922127 -23985443 + MIR SINE MIR 51 242 -20 1597 197 3 3 chr21 20922291 20922580 -23984990 + AluJb SINE Alu 18 306 -6 943 164 24 0 chr21 20922583 20922748 -23984822 + L1PB3 LINE L1 5986 6154 0 4422 96 13 0 chr21 20923305 20923931 -23983639 - L1PA10 LINE L1 -234 5934 5301 * 19053 149 14 8 chr21 20923930 20927234 -23980336 - L1PA10 LINE L1 -1291 4855 1531 5180 191 20 5 chr21 20927258 20928917 -23978653 - L1MA4 LINE L1 -9 6291 4608 426 204 48 0 chr21 20928917 20929020 -23978550 + Tigger5 DNA MER2_type 2213 2320 -3 28 61 0 0 chr21 20930174 20930223 -23977347 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr21 20930402 20930433 -23977137 + AT_rich Low_complexity Low_complexity 1 31 0 221 227 30 15 chr21 20930517 20930583 -23976987 + (TTG)n Simple_repeat Simple_repeat 3 69 0 22 70 0 0 chr21 20930870 20930913 -23976657 + AT_rich Low_complexity Low_complexity 1 43 0 261 163 88 12 chr21 20931244 20931324 -23976246 - L1MA10 LINE L1 -1 6333 6248 298 198 0 37 chr21 20931361 20931442 -23976128 - L1MA10 LINE L1 -13 6321 6244 1301 212 59 10 chr21 20931914 20932202 -23975368 + AluJb SINE Alu 1 302 -10 257 0 30 0 chr21 20932237 20932270 -23975300 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1157 154 31 0 chr21 20932270 20932465 -23975105 - L1PB4 LINE L1 -11 6145 5945 2135 127 3 0 chr21 20933197 20933497 -23974073 - AluSx SINE Alu -11 301 1 2522 212 16 22 chr21 20933976 20934481 -23973089 - MLT2B2 LTR ERVL -13 502 1 1591 167 88 25 chr21 20934696 20935049 -23972521 + THE1C LTR MaLR 1 375 0 3227 107 34 137 chr21 20935051 20935759 -23971811 + THE1C-int LTR MaLR 3 637 -943 64 96 0 0 chr21 20936617 20936814 -23970756 + AT_rich Low_complexity Low_complexity 1 197 0 2893 172 2 52 chr21 20938044 20938165 -23969405 + L1PA16 LINE L1 5592 5718 -448 234 0 0 0 chr21 20938165 20938191 -23969379 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2893 172 2 52 chr21 20938191 20938645 -23968925 + L1PA16 LINE L1 5718 6138 -28 2260 113 0 13 chr21 20939713 20940023 -23967547 + AluSg SINE Alu 5 310 0 21 0 0 0 chr21 20940282 20940303 -23967267 + AT_rich Low_complexity Low_complexity 1 21 0 3157 177 43 6 chr21 20940415 20941127 -23966443 + L1PA15 LINE L1 5398 6160 0 322 223 24 84 chr21 20941231 20941352 -23966218 - L1MC5 LINE L1 -401 7560 7450 1699 248 62 57 chr21 20941352 20941954 -23965616 + MER77 LTR ERV1 1 605 0 322 223 24 84 chr21 20941954 20941998 -23965572 - L1MC5 LINE L1 -511 7450 7405 26 0 0 0 chr21 20942818 20942844 -23964726 + AT_rich Low_complexity Low_complexity 1 26 0 310 158 18 0 chr21 20944095 20944152 -23963418 + LTR60 LTR ERV1 1 58 -528 2011 111 50 0 chr21 20944348 20944646 -23962924 + AluSp SINE Alu 1 313 0 1057 230 24 31 chr21 20944648 20944939 -23962631 + LTR43 LTR ERV1 173 461 -141 270 273 0 0 chr21 20944976 20945031 -23962539 + MER50 LTR ERV1 631 685 -49 33 56 0 0 chr21 20945085 20945139 -23962431 + AT_rich Low_complexity Low_complexity 1 54 0 990 138 66 0 chr21 20945485 20945652 -23961918 + MER21A LTR ERV1 754 931 0 1381 190 7 38 chr21 20945652 20945942 -23961628 + MER21A-int LTR ERV1 1 281 -3910 630 184 9 0 chr21 20945942 20946051 -23961519 + MER72 LTR ERV1 1 110 -612 2571 200 8 4 chr21 20946051 20946535 -23961035 + MER66B LTR ERV1 1 486 0 1975 135 12 25 chr21 20946555 20946878 -23960692 - THE1B LTR MaLR 0 364 33 1382 170 12 2 chr21 20946909 20947270 -23960300 + MER72 LTR ERV1 288 722 0 17524 204 38 25 chr21 20947270 20948091 -23959479 + MER21A-int LTR ERV1 279 1088 -3103 2298 67 0 0 chr21 20948091 20948405 -23959165 + AluY SINE Alu 1 311 0 17524 204 38 25 chr21 20948405 20949124 -23958446 + MER21A-int LTR ERV1 1088 1796 -2395 1950 175 69 17 chr21 20949124 20949529 -23958041 - MSTB LTR MaLR 0 426 1 17524 204 38 25 chr21 20949529 20949746 -23957824 + MER21A-int LTR ERV1 1796 2009 -2182 2611 48 0 0 chr21 20949746 20950056 -23957514 - AluY SINE Alu 0 311 2 17524 204 38 25 chr21 20950056 20951071 -23956499 + MER21A-int LTR ERV1 2009 3009 -1182 277 24 48 0 chr21 20951071 20951113 -23956457 + (CAA)n Simple_repeat Simple_repeat 2 45 0 17524 204 38 25 chr21 20951113 20952145 -23955425 + MER21A-int LTR ERV1 3009 4135 -56 2309 57 3 3 chr21 20952269 20952596 -23954974 - AluY SINE Alu 0 327 1 325 261 0 0 chr21 20952597 20952666 -23954904 + MER21B LTR ERV1 11 79 -784 1062 219 56 8 chr21 20952757 20952886 -23954684 - AluJo SINE Alu -49 263 142 288 0 0 0 chr21 20952886 20952918 -23954652 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1062 219 56 8 chr21 20952918 20953039 -23954531 - AluJo SINE Alu -170 142 1 195 312 162 13 chr21 20954614 20954768 -23952802 - L3 LINE CR1 -432 1145 969 1037 145 0 0 chr21 20954913 20955065 -23952505 - AluSq SINE Alu -26 287 136 21 36 0 0 chr21 20955487 20955515 -23952055 + AT_rich Low_complexity Low_complexity 1 28 0 186 315 22 45 chr21 20956339 20956428 -23951142 - L2 LINE L2 -869 2445 2359 242 315 0 96 chr21 20956467 20956552 -23951018 - L2 LINE L2 0 3313 3246 1524 166 37 87 chr21 20956552 20956931 -23950639 + THE1B LTR MaLR 1 360 -4 242 315 0 96 chr21 20956931 20956991 -23950579 - L2 LINE L2 -67 3246 3182 1164 183 95 117 chr21 20957289 20957775 -23949795 - LTR45B LTR ERV1 -10 479 5 519 174 22 0 chr21 20957930 20958022 -23949548 - MER101 LTR ERV1 -204 270 177 647 189 35 129 chr21 20958254 20958484 -23949086 - LTR49-int LTR ERV1 -1256 3680 3487 2236 99 0 7 chr21 20958484 20958786 -23948784 + AluY SINE Alu 2 301 -10 647 189 35 129 chr21 20958786 20958872 -23948698 - LTR49-int LTR ERV1 -1449 3487 3394 503 148 98 148 chr21 20958870 20959114 -23948456 - LTR49-int LTR ERV1 -1758 4573 4342 * 1708 101 13 0 chr21 20959114 20959341 -23948229 - AluSp SINE Alu -60 253 24 1095 191 31 35 chr21 20959342 20959630 -23947940 - LTR49-int LTR ERV1 -4434 2324 2038 594 223 69 12 chr21 20959692 20959871 -23947699 - LTR49-int LTR ERV1 -3225 3106 1293 1895 229 112 43 chr21 20960829 20961507 -23946063 - MER50 LTR ERV1 0 734 10 1004 189 94 130 chr21 20962123 20962578 -23944992 - LTR45B LTR ERV1 0 489 51 1857 138 3 3 chr21 20962585 20962891 -23944679 + AluSx SINE Alu 1 306 0 577 239 22 0 chr21 20963068 20963202 -23944368 - MER89 LTR ERV1 -52 507 371 1118 243 27 3 chr21 20963205 20963497 -23944073 - MER89 LTR ERV1 0 559 261 948 146 0 43 chr21 20963637 20963801 -23943769 + AluSx SINE Alu 32 188 -124 * 1158 161 10 21 chr21 20963800 20963993 -23943577 + AluSg/x SINE Alu 110 300 -12 576 322 87 24 chr21 20964125 20964414 -23943156 + LTR16A LTR ERVL 144 450 0 22 0 0 0 chr21 20964536 20964558 -23943012 + AT_rich Low_complexity Low_complexity 1 22 0 399 41 0 0 chr21 20964590 20964639 -23942931 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 34 65 0 0 chr21 20966232 20966294 -23941276 + AT_rich Low_complexity Low_complexity 1 62 0 210 363 77 12 chr21 20966591 20966759 -23940811 + L2 LINE L2 851 1029 -2285 2439 63 0 10 chr21 20967292 20967592 -23939978 - AluY SINE Alu -14 297 1 1773 235 92 2 chr21 20967903 20968406 -23939164 - L1M4 LINE L1 -920 5226 4679 1634 220 9 8 chr21 20968896 20969324 -23938246 + MLT1C LTR MaLR 3 465 -2 627 259 41 12 chr21 20970102 20970272 -23937298 - MER101 LTR ERV1 -58 416 242 274 248 188 0 chr21 20970529 20970646 -23936924 + L1MEd LINE L1 1062 1200 -4919 388 330 87 35 chr21 20970753 20971041 -23936529 + L1MEd LINE L1 1320 1622 -4688 21 36 0 0 chr21 20971046 20971074 -23936496 + AT_rich Low_complexity Low_complexity 1 28 0 887 314 45 18 chr21 20971081 20971527 -23936043 + L1ME3A LINE L1 5669 6126 -44 22 35 0 0 chr21 20971527 20971556 -23936014 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 20972352 20972375 -23935195 + AT_rich Low_complexity Low_complexity 1 23 0 203 179 0 0 chr21 20972436 20972475 -23935095 + A-rich Low_complexity Low_complexity 81 119 0 1445 181 11 26 chr21 20972599 20972870 -23934700 - AluJo SINE Alu -32 280 14 1279 90 0 0 chr21 20973311 20973478 -23934092 + AluY SINE Alu 134 300 -11 30 0 0 0 chr21 20973944 20973974 -23933596 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr21 20974062 20974087 -23933483 + AT_rich Low_complexity Low_complexity 1 25 0 1607 146 21 125 chr21 20974599 20974970 -23932600 + MLT1B LTR MaLR 1 322 -68 2160 117 0 3 chr21 20974970 20975279 -23932291 - AluY SINE Alu -3 308 1 1607 146 21 125 chr21 20975279 20975339 -23932231 + MLT1B LTR MaLR 322 387 -3 1727 159 26 62 chr21 20975527 20975916 -23931654 - THE1C LTR MaLR 0 375 1 347 129 0 58 chr21 20976742 20976913 -23930657 + (TA)n Simple_repeat Simple_repeat 1 161 0 186 43 0 0 chr21 20977761 20977784 -23929786 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr21 20977876 20977898 -23929672 + AT_rich Low_complexity Low_complexity 1 22 0 3685 171 16 29 chr21 20977898 20978664 -23928906 - L1MA4 LINE L1 -10 6290 5535 24 32 0 0 chr21 20982064 20982095 -23925475 + AT_rich Low_complexity Low_complexity 1 31 0 1440 63 19 19 chr21 20982335 20982541 -23925029 + L1PA5 LINE L1 5944 6149 -5 23 0 0 0 chr21 20982908 20982931 -23924639 + AT_rich Low_complexity Low_complexity 1 23 0 1421 24 0 0 chr21 20983464 20983631 -23923939 - L1P1 LINE L1 -373 5782 5616 * 3381 25 11 0 chr21 20983526 20984000 -23923570 + L1HS LINE L1 5657 6155 0 26 0 0 0 chr21 20984379 20984405 -23923165 + AT_rich Low_complexity Low_complexity 1 26 0 2034 162 39 8 chr21 20984654 20985018 -23922552 + THE1C LTR MaLR 1 375 0 41 48 0 0 chr21 20985026 20985088 -23922482 + AT_rich Low_complexity Low_complexity 1 62 0 256 244 73 65 chr21 20985212 20985335 -23922235 + MER94 DNA DNA 1 124 -10 249 346 10 10 chr21 20986691 20986792 -23920778 + MER63 DNA MER1_type 7 733 -329 2129 125 30 55 chr21 20986831 20987192 -23920378 - THE1C LTR MaLR -2 373 22 287 157 14 0 chr21 20989040 20989110 -23918460 + GA-rich Low_complexity Low_complexity 2 72 0 1649 145 61 71 chr21 20989706 20990085 -23917485 + THE1C LTR MaLR 1 375 0 300 246 67 67 chr21 20990325 20990459 -23917111 + MER115 DNA AcHobo 2 135 -558 1688 162 29 0 chr21 20990777 20991049 -23916521 + AluSg SINE Alu 1 280 -30 369 0 0 0 chr21 20991052 20991093 -23916477 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 288 278 61 17 chr21 20991094 20991209 -23916361 + Zaphod DNA AcHobo 3883 4002 -29 2207 109 0 0 chr21 20993213 20993507 -23914063 + AluSp SINE Alu 1 294 -19 961 208 6 0 chr21 20993511 20993689 -23913881 + FRAM SINE Alu 1 176 0 232 216 0 0 chr21 20995106 20995157 -23912413 - L1MC4 LINE L1 -1340 6702 6652 1458 186 7 35 chr21 20995190 20995480 -23912090 - AluJb SINE Alu -30 282 1 25 31 0 0 chr21 20996383 20996415 -23911155 + AT_rich Low_complexity Low_complexity 1 32 0 264 122 0 0 chr21 20996445 20996486 -23911084 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr21 20996836 20996858 -23910712 + AT_rich Low_complexity Low_complexity 1 22 0 275 242 84 0 chr21 20997248 20997343 -23910227 - L1MC3 LINE L1 -159 7626 7524 233 211 0 39 chr21 20997366 20997418 -23910152 - MLT1A2 LTR MaLR -304 70 21 1207 206 64 21 chr21 20997421 20997702 -23909868 + MLT1A1 LTR MaLR 73 365 0 1013 229 69 28 chr21 20997702 20997990 -23909580 - L1MC3 LINE L1 -253 7532 7233 1680 252 12 2 chr21 20998071 20998492 -23909078 - L1MC3 LINE L1 -1201 6584 6160 285 239 23 11 chr21 20998516 20998604 -23908966 - L1P5 LINE L1 -716 5438 5350 2143 124 0 3 chr21 20999228 20999535 -23908035 - AluSc SINE Alu -3 306 1 389 274 24 83 chr21 20999644 20999812 -23907758 - L2 LINE L2 -34 3279 3122 303 349 42 24 chr21 20999938 21000104 -23907466 - MLT2E LTR ERVL -357 271 103 25 31 0 0 chr21 21000420 21000452 -23907118 + AT_rich Low_complexity Low_complexity 1 32 0 307 367 83 21 chr21 21000563 21000852 -23906718 - HERVL-E LTR ERVL -331 5323 5017 1045 309 41 3 chr21 21000876 21001238 -23906332 + L1MEc LINE L1 180 555 -5841 525 139 28 0 chr21 21001265 21001373 -23906197 + CT-rich Low_complexity Low_complexity 2 112 0 1570 100 43 9 chr21 21001377 21001607 -23905963 - AluSq SINE Alu -21 292 55 21 0 0 0 chr21 21001954 21001975 -23905595 + AT_rich Low_complexity Low_complexity 1 21 0 1910 129 4 4 chr21 21002020 21002300 -23905270 - AluSx SINE Alu -32 280 1 2734 10 0 10 chr21 21002716 21003025 -23904545 - AluYb8 SINE Alu -12 306 1 21 36 0 0 chr21 21003322 21003350 -23904220 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 21004054 21004083 -23903487 + AT_rich Low_complexity Low_complexity 1 29 0 1352 284 107 20 chr21 21004376 21004936 -23902634 + MER90 LTR ERV1 6 614 0 404 311 87 0 chr21 21005004 21005187 -23902383 - LTR33 LTR ERVL 0 521 323 1823 163 27 0 chr21 21005648 21005949 -23901621 + AluSx SINE Alu 1 309 -3 1784 204 28 3 chr21 21007159 21007522 -23900048 + MER67C LTR ERV1 265 636 -74 816 111 0 0 chr21 21007635 21007743 -23899827 + AluSq/x SINE Alu 1 108 -204 42 86 0 0 chr21 21007746 21007851 -23899719 + AT_rich Low_complexity Low_complexity 1 105 0 426 117 13 0 chr21 21007864 21007941 -23899629 + MER67C LTR ERV1 631 708 -2 25 90 0 0 chr21 21008306 21008373 -23899197 + AT_rich Low_complexity Low_complexity 1 67 0 835 271 27 97 chr21 21009188 21009672 -23897898 - L1MEc LINE L1 -5934 462 13 * 1161 258 142 82 chr21 21009657 21009855 -23897715 - L1MDa LINE L1 -1542 4884 4699 1255 223 29 61 chr21 21009855 21010232 -23897338 - MLT1A1 LTR MaLR 0 365 1 1161 258 142 82 chr21 21010232 21010545 -23897025 - L1MDa LINE L1 -1727 4699 4406 2003 148 0 6 chr21 21010545 21010856 -23896714 - AluSx SINE Alu -3 309 1 1161 258 142 82 chr21 21010856 21010968 -23896602 - L1MDa LINE L1 -2020 4406 4302 1249 230 86 84 chr21 21010968 21011152 -23896418 + MLT1C LTR MaLR 1 183 -284 2221 80 7 3 chr21 21011152 21011440 -23896130 + AluSq SINE Alu 1 289 -24 1249 230 86 84 chr21 21011440 21011721 -23895849 + MLT1C LTR MaLR 183 467 0 1161 258 142 82 chr21 21011721 21012496 -23895074 - L1MDa LINE L1 -2124 4302 3575 6046 39 0 1 chr21 21012496 21013232 -23894338 - L1PA5 LINE L1 -7 6147 5413 1161 258 142 82 chr21 21013232 21013915 -23893655 - L1MDa LINE L1 -2851 3575 2643 1393 235 30 45 chr21 21013915 21014311 -23893259 + MLT1B LTR MaLR 1 390 0 1161 258 142 82 chr21 21014311 21014550 -23893020 - L1MDa LINE L1 -3783 2643 2420 325 226 36 74 chr21 21014689 21014909 -23892661 - L1MDa LINE L1 -4881 1545 1197 2489 57 0 0 chr21 21014973 21015272 -23892298 - AluY SINE Alu -12 299 1 1988 134 0 44 chr21 21015300 21015620 -23891950 + AluSc SINE Alu 3 308 -1 187 179 0 179 chr21 21016257 21016324 -23891246 - L2 LINE L2 -5 3308 3254 1974 139 7 0 chr21 21016409 21016719 -23890851 - AluSx SINE Alu 0 312 1 1051 320 89 36 chr21 21018220 21019292 -23888278 + L1MEc LINE L1 59 1186 -5210 298 352 28 25 chr21 21019413 21019777 -23887793 + L1MEc LINE L1 1345 1709 -4687 817 279 69 55 chr21 21019804 21020312 -23887258 + L1 LINE L1 4060 4574 -1572 25 102 0 0 chr21 21020406 21020494 -23887076 + AT_rich Low_complexity Low_complexity 1 88 0 3599 118 25 0 chr21 21020738 21021308 -23886262 + L1PB2 LINE L1 5568 6151 0 251 232 29 0 chr21 21022324 21022393 -23885177 - L1ME LINE L1 -384 5737 5667 396 190 0 0 chr21 21022577 21022656 -23884914 + MADE1 DNA Mariner 1 79 -1 22 88 0 0 chr21 21023028 21023085 -23884485 + AT_rich Low_complexity Low_complexity 1 57 0 273 98 0 0 chr21 21023958 21023999 -23883571 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 47 0 0 chr21 21024119 21024162 -23883408 + AT_rich Low_complexity Low_complexity 1 43 0 595 229 0 8 chr21 21024322 21024444 -23883126 - AluJb SINE Alu -59 253 133 1810 179 92 23 chr21 21024462 21024853 -23882717 - MER47B DNA MER2_type 0 418 1 250 364 21 56 chr21 21024930 21025073 -23882497 - L2 LINE L2 -8 3264 3127 1900 132 14 7 chr21 21025686 21025982 -23881588 + AluSx SINE Alu 1 298 -14 306 182 0 0 chr21 21025988 21026054 -23881516 + GA-rich Low_complexity Low_complexity 1 66 0 192 77 0 0 chr21 21026049 21026075 -23881495 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 * 278 329 49 7 chr21 21026104 21026247 -23881323 + L1MC4 LINE L1 7322 7470 -572 2216 219 6 9 chr21 21026461 21026985 -23880585 + L1 LINE L1 4688 5209 -937 3079 154 38 22 chr21 21026994 21027577 -23879993 - LTR1 LTR ERV1 0 785 194 1204 167 46 53 chr21 21027582 21027864 -23879706 - LTR1 LTR ERV1 -497 288 9 901 55 16 8 chr21 21027875 21028003 -23879567 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 2028 111 4 7 chr21 21028004 21028284 -23879286 - AluSp SINE Alu -32 281 3 4875 156 25 10 chr21 21028353 21029286 -23878284 + L1PA16 LINE L1 5206 6150 -16 250 338 0 0 chr21 21029546 21029620 -23877950 + L1MDa LINE L1 26 99 -6441 650 256 79 35 chr21 21029828 21030210 -23877360 - L1ME LINE L1 -562 5608 5215 2614 20 0 0 chr21 21030298 21030597 -23876973 - AluYa5 SINE Alu -5 306 8 331 289 237 6 chr21 21030705 21030878 -23876692 - L1ME3A LINE L1 -189 5981 5769 441 296 89 39 chr21 21030900 21031360 -23876210 - L1ME LINE L1 -345 5817 5335 681 293 58 65 chr21 21031549 21031680 -23875890 - L1ME LINE L1 -1117 5029 4899 204 40 0 0 chr21 21031680 21031705 -23875865 + (TA)n Simple_repeat Simple_repeat 1 25 0 2018 94 4 0 chr21 21031705 21031970 -23875600 - AluY SINE Alu -18 293 28 681 293 58 65 chr21 21031970 21032730 -23874840 - L1ME LINE L1 -1245 4901 4143 1599 286 58 50 chr21 21033125 21033409 -23874161 + L1ME3A LINE L1 4780 5060 -1110 986 259 45 56 chr21 21033409 21033787 -23873783 - MLT1A2 LTR MaLR 0 374 1 1599 286 58 50 chr21 21033787 21034862 -23872708 + L1ME3A LINE L1 5060 6157 -13 23 54 0 0 chr21 21034863 21034900 -23872670 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr21 21034937 21034975 -23872595 + AT_rich Low_complexity Low_complexity 1 38 0 592 311 69 19 chr21 21035378 21035638 -23871932 + LTR16C LTR ERVL 210 482 -9 21 57 0 0 chr21 21035900 21035935 -23871635 + AT_rich Low_complexity Low_complexity 1 35 0 666 276 49 11 chr21 21038401 21038586 -23868984 + MER58A DNA MER1_type 21 212 -12 306 0 0 0 chr21 21039162 21039196 -23868374 + (TG)n Simple_repeat Simple_repeat 2 35 0 440 365 114 24 chr21 21039371 21039705 -23867865 + L2 LINE L2 2507 2870 -444 2354 143 46 7 chr21 21039861 21040273 -23867297 + MSTA LTR MaLR 1 428 0 1335 233 32 32 chr21 21041356 21041729 -23865841 + MLT1A2 LTR MaLR 1 373 -1 1860 147 14 0 chr21 21041822 21042114 -23865456 + AluJb SINE Alu 1 296 -16 441 145 0 0 chr21 21042128 21042204 -23865366 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 1663 183 7 7 chr21 21042433 21042734 -23864836 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr21 21045884 21045906 -23861664 + AT_rich Low_complexity Low_complexity 1 22 0 1721 127 44 11 chr21 21045919 21046194 -23861376 - AluSg1 SINE Alu -25 284 1 24 32 0 0 chr21 21046380 21046411 -23861159 + AT_rich Low_complexity Low_complexity 1 31 0 180 200 0 0 chr21 21046425 21046470 -23861100 + A-rich Low_complexity Low_complexity 1 45 0 366 325 0 34 chr21 21046727 21046844 -23860726 + L2 LINE L2 3191 3303 -10 2295 48 0 10 chr21 21047131 21047443 -23860127 + AluY SINE Alu 1 311 0 1545 179 76 71 chr21 21048933 21049314 -23858256 - MSTA LTR MaLR 0 428 46 1418 98 54 5 chr21 21049315 21049539 -23858031 - LTR12 LTR ERV1 0 714 480 355 204 31 20 chr21 21049540 21049638 -23857932 - LTR30 LTR ERV1 -80 642 544 4253 123 57 29 chr21 21049638 21050573 -23856997 - pTR5 LTR ERV1 -413 2025 745 236 156 0 22 chr21 21050575 21050620 -23856950 - MSTA LTR MaLR -379 47 4 22 35 0 0 chr21 21050733 21050762 -23856808 + AT_rich Low_complexity Low_complexity 1 29 0 26 34 0 51 chr21 21051092 21051151 -23856419 + AT_rich Low_complexity Low_complexity 1 56 0 12085 214 46 28 chr21 21052586 21056361 -23851209 + L1MA9 LINE L1 2038 5741 -807 279 0 0 0 chr21 21056361 21056392 -23851178 + (TA)n Simple_repeat Simple_repeat 2 32 0 12085 214 46 28 chr21 21056392 21056532 -23851038 + L1MA9 LINE L1 5741 5877 -671 279 0 0 0 chr21 21056532 21056563 -23851007 + (CA)n Simple_repeat Simple_repeat 2 32 0 12085 214 46 28 chr21 21056563 21057055 -23850515 + L1MA9 LINE L1 5877 6546 -2 612 315 55 0 chr21 21057066 21057339 -23850231 - L1M4 LINE L1 -1310 4836 4549 187 43 0 0 chr21 21058311 21058334 -23849236 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1605 126 102 0 chr21 21058334 21058589 -23848981 - AluSg SINE Alu -1 303 1 653 318 15 0 chr21 21058787 21058988 -23848582 - MER58A DNA MER1_type -20 204 1 49 52 0 0 chr21 21060373 21060450 -23847120 + AT_rich Low_complexity Low_complexity 1 77 0 22 80 0 0 chr21 21060519 21060569 -23847001 + AT_rich Low_complexity Low_complexity 1 50 0 315 199 45 45 chr21 21060662 21060838 -23846732 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 755 248 7 103 chr21 21060862 21060997 -23846573 + L1M4 LINE L1 4738 4884 -1262 2288 91 0 3 chr21 21060997 21061294 -23846276 - AluSc SINE Alu -13 296 1 755 248 7 103 chr21 21061294 21061594 -23845976 + L1M4 LINE L1 4884 5131 -1015 419 238 8 103 chr21 21061901 21062027 -23845543 + L1PBb LINE L1 938 1051 -5798 6942 229 48 50 chr21 21062273 21065334 -23842236 + L1PBb LINE L1 1096 4302 -2546 1878 199 55 38 chr21 21065333 21065911 -23841659 + L1 LINE L1 4937 5524 -1324 * 2628 228 63 28 chr21 21065942 21066730 -23840840 + L1MA3 LINE L1 2884 3699 -3149 * 4096 175 17 66 chr21 21066697 21068296 -23839274 + L1MA3 LINE L1 4990 6536 -471 1969 144 0 30 chr21 21068296 21068601 -23838969 + AluSx SINE Alu 1 296 -16 4096 175 17 66 chr21 21068601 21069046 -23838524 + L1MA3 LINE L1 6536 7001 -6 23 0 0 0 chr21 21069046 21069069 -23838501 + AT_rich Low_complexity Low_complexity 1 23 0 996 181 5 0 chr21 21069075 21069263 -23838307 + L1M2 LINE L1 4389 4577 -2271 1355 160 15 15 chr21 21069263 21069523 -23838047 + L1PA16 LINE L1 5898 6165 -1 1416 241 94 2 chr21 21069551 21069953 -23837617 + L1MD2 LINE L1 5794 6232 -127 * 2580 181 54 39 chr21 21069947 21070704 -23836866 - L1MC2 LINE L1 -463 5881 5317 745 238 0 24 chr21 21070714 21070882 -23836688 - AluJo SINE Alu -147 165 2 461 252 16 0 chr21 21070882 21071009 -23836561 - L1MC2 LINE L1 -811 5335 5207 1805 161 0 3 chr21 21071093 21071378 -23836192 - AluJb SINE Alu -18 294 11 23 33 0 0 chr21 21072726 21072756 -23834814 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr21 21072965 21072995 -23834575 + AT_rich Low_complexity Low_complexity 1 30 0 1219 185 8 44 chr21 21073228 21073477 -23834093 - MER34 LTR ERV1 -3 539 300 278 211 0 0 chr21 21073478 21073530 -23834040 - MER34 LTR ERV1 -488 54 3 324 368 161 0 chr21 21073596 21073789 -23833781 - MIR SINE MIR -8 254 31 1804 188 43 16 chr21 21074004 21074377 -23833193 - MER61D LTR ERV1 -5 496 114 12787 118 54 17 chr21 21074421 21076513 -23831057 - MER61D-int LTR ERV1 -4 5213 3045 1912 114 59 0 chr21 21076522 21076795 -23830775 + AluSc SINE Alu 1 289 -20 610 160 19 0 chr21 21076808 21076914 -23830656 - MER61D-int LTR ERV1 -2711 2506 2399 378 198 0 90 chr21 21076913 21077024 -23830546 - MER61D-int LTR ERV1 -4915 302 202 * 297 182 90 30 chr21 21077036 21077135 -23830435 - MER61D-int LTR ERV1 -6478 518 390 1083 101 5 45 chr21 21077153 21077351 -23830219 - MER61D-int LTR ERV1 -2827 2390 2201 675 167 83 18 chr21 21077333 21077501 -23830069 - MER61D-int LTR ERV1 -3340 4197 4019 * 3063 152 45 6 chr21 21077468 21078236 -23829334 - MER61D-int LTR ERV1 -3577 2380 1215 1639 157 33 9 chr21 21078245 21078715 -23828855 - MER61D-int LTR ERV1 -4401 2644 467 339 192 27 0 chr21 21078716 21078789 -23828781 - MADE1 DNA Mariner 0 80 6 866 226 14 36 chr21 21078796 21079068 -23828502 - MER61D-int LTR ERV1 -4824 393 200 301 192 82 0 chr21 21079087 21079160 -23828410 - MER61D-int LTR ERV1 -6607 484 406 546 282 0 45 chr21 21079177 21079333 -23828237 - MER61D-int LTR ERV1 -5067 150 2 2040 162 37 21 chr21 21079333 21079715 -23827855 - MER61D LTR ERV1 0 501 114 1915 122 28 10 chr21 21080683 21080971 -23826599 - AluSg SINE Alu -17 293 1 195 309 201 10 chr21 21082062 21082266 -23825304 + MIR SINE MIR 19 261 -1 448 229 37 9 chr21 21082377 21082486 -23825084 - HsTC2 DNA Tc2 -1781 117 6 1307 230 68 39 chr21 21082791 21083174 -23824396 + MSTD LTR MaLR 3 396 0 38 22 0 0 chr21 21083184 21083229 -23824341 + AT_rich Low_complexity Low_complexity 1 45 0 1575 266 68 28 chr21 21083327 21083827 -23823743 - MLT2B1 LTR ERVL 0 520 1 778 344 139 5 chr21 21084066 21084707 -23822863 - L2 LINE L2 0 3313 2597 292 213 87 79 chr21 21084737 21084864 -23822706 + L2 LINE L2 1924 2051 -1263 1046 186 0 26 chr21 21084920 21085113 -23822457 + MER20 DNA MER1_type 32 219 0 1307 321 67 36 chr21 21085123 21085798 -23821772 + L2 LINE L2 2083 2778 -536 2104 96 39 0 chr21 21085817 21086099 -23821471 + AluSc SINE Alu 1 293 -16 198 0 0 0 chr21 21087479 21087501 -23820069 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 183 80 0 0 chr21 21087851 21087876 -23819694 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 23 33 0 0 chr21 21088086 21088116 -23819454 + AT_rich Low_complexity Low_complexity 1 30 0 2156 181 11 32 chr21 21088143 21088586 -23818984 - L1MC1 LINE L1 0 6333 5900 2077 156 34 0 chr21 21088605 21088963 -23818607 - L1MC1 LINE L1 -508 5825 5456 3496 180 64 6 chr21 21088963 21089635 -23817935 + MER50 LTR ERV1 1 711 -23 284 333 21 14 chr21 21090128 21090269 -23817301 - MLT1L LTR MaLR -325 290 149 186 43 0 0 chr21 21090662 21090685 -23816885 + (TTG)n Simple_repeat Simple_repeat 1 23 0 703 133 6 155 chr21 21090685 21090783 -23816787 - LTR57 LTR ERVL -102 309 198 1565 186 72 0 chr21 21090783 21091074 -23816496 - AluJo SINE Alu 0 312 1 1271 179 107 4 chr21 21091084 21091364 -23816206 - AluJb SINE Alu -3 309 1 703 133 6 155 chr21 21091364 21091435 -23816135 - LTR57 LTR ERVL -223 188 156 6455 39 0 0 chr21 21091706 21092484 -23815086 + L1PA5 LINE L1 5377 6154 0 215 165 0 47 chr21 21092755 21092840 -23814730 + (TA)n Simple_repeat Simple_repeat 2 82 0 200 227 0 0 chr21 21093132 21093176 -23814394 + A-rich Low_complexity Low_complexity 3 46 0 25 0 0 0 chr21 21094692 21094717 -23812853 + AT_rich Low_complexity Low_complexity 1 25 0 2093 96 27 3 chr21 21094815 21095108 -23812462 + AluSc SINE Alu 1 300 -9 1718 181 7 0 chr21 21096233 21096526 -23811044 + AluJb SINE Alu 1 295 -17 1493 160 48 13 chr21 21096955 21097268 -23810302 + L1MA10 LINE L1 6008 6331 -3 391 303 98 39 chr21 21097382 21097616 -23809954 + MIR SINE MIR 15 262 0 341 300 95 37 chr21 21097715 21097905 -23809665 + MIR SINE MIR 31 231 -31 23 0 0 0 chr21 21097916 21097939 -23809631 + AT_rich Low_complexity Low_complexity 1 23 0 673 196 8 8 chr21 21098139 21098272 -23809298 + FLAM_A SINE Alu 1 133 0 27 0 0 0 chr21 21098273 21098300 -23809270 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr21 21098373 21098401 -23809169 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr21 21099363 21099398 -23808172 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr21 21099784 21099814 -23807756 + AT_rich Low_complexity Low_complexity 1 30 0 2549 143 5 11 chr21 21099814 21100256 -23807314 - L1MA1 LINE L1 -4 6298 5860 294 236 110 0 chr21 21100261 21100388 -23807182 - L1 LINE L1 -1650 5915 5775 * 3727 101 11 2 chr21 21100382 21100928 -23806642 - L1MA2 LINE L1 -447 5857 5307 1356 75 11 11 chr21 21100938 21101112 -23806458 - AluSp SINE Alu -139 174 1 4187 52 0 6 chr21 21101113 21101632 -23805938 - HERVL LTR ERVL -1681 3973 3458 5273 227 24 5 chr21 21101632 21102692 -23804878 - L1 LINE L1 -6034 1531 452 467 142 19 204 chr21 21102694 21102806 -23804764 - L1 LINE L1 -7375 190 133 438 75 62 0 chr21 21102806 21102886 -23804684 - L1PA14 LINE L1 0 6161 6077 467 142 19 204 chr21 21102886 21102984 -23804586 - L1 LINE L1 -7432 133 19 208 266 16 0 chr21 21102995 21103059 -23804511 - MIR SINE MIR -20 242 178 1017 259 115 26 chr21 21103072 21103462 -23804108 + MER57B LTR ERV1 10 434 0 306 324 55 21 chr21 21103503 21103648 -23803922 - MIR SINE MIR -105 157 8 1594 197 0 28 chr21 21104968 21105288 -23802282 - AluSx SINE Alu -1 311 1 311 338 99 15 chr21 21105289 21105490 -23802080 + L1ME LINE L1 5336 5553 -611 181 140 60 60 chr21 21105758 21105808 -23801762 + MER5B DNA MER1_type 85 134 -44 448 198 38 9 chr21 21107635 21107741 -23799829 + Tigger6a DNA MER2_type 2 110 -973 1746 175 70 14 chr21 21107741 21108096 -23799474 - THE1C LTR MaLR 0 375 1 9856 117 43 5 chr21 21108096 21109617 -23797953 - THE1C-int LTR MaLR 0 1580 1 1784 161 68 8 chr21 21109618 21109971 -23797599 - THE1C LTR MaLR -1 374 1 2304 185 60 100 chr21 21109971 21110468 -23797102 + Tigger6a DNA MER2_type 106 541 -1056 1798 141 3 56 chr21 21110468 21110774 -23796796 - AluSx SINE Alu -22 290 1 2304 185 60 100 chr21 21110774 21111080 -23796490 + Tigger6a DNA MER2_type 541 858 -225 22 35 0 0 chr21 21111508 21111537 -23796033 + AT_rich Low_complexity Low_complexity 1 29 0 2063 141 19 42 chr21 21112077 21112559 -23795011 + MER4A LTR ERV1 1 425 -239 532 239 36 24 chr21 21112574 21112741 -23794829 + MER4C LTR ERV1 277 445 -20 204 40 0 0 chr21 21114007 21114032 -23793538 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2214 122 0 0 chr21 21114063 21114366 -23793204 - AluSq SINE Alu -10 303 1 258 32 0 0 chr21 21114590 21114621 -23792949 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3711 28 0 0 chr21 21114621 21115058 -23792512 - L1PA4 LINE L1 -11 6144 5708 24 0 0 0 chr21 21115669 21115693 -23791877 + AT_rich Low_complexity Low_complexity 1 24 0 268 141 14 42 chr21 21116281 21116302 -23791268 + (CATA)n Simple_repeat Simple_repeat 2 22 -48 1112 196 130 57 chr21 21116302 21116762 -23790808 + LTR54B LTR ERV1 2 495 -3 268 141 14 42 chr21 21116762 21116811 -23790759 + (CATA)n Simple_repeat Simple_repeat 22 70 0 27 0 0 0 chr21 21117908 21117935 -23789635 + AT_rich Low_complexity Low_complexity 1 27 0 1246 289 60 0 chr21 21117963 21118426 -23789144 + L1MEc LINE L1 472 962 -5434 250 291 31 8 chr21 21118427 21118554 -23789016 + (TA)n Simple_repeat Simple_repeat 2 131 0 560 251 170 53 chr21 21118584 21119071 -23788499 - MER34C LTR ERV1 -5 580 37 777 251 112 24 chr21 21119073 21119360 -23788210 + L1MD3 LINE L1 6681 6992 -1003 1761 176 90 4 chr21 21119361 21119730 -23787840 - LTR48 LTR ERV1 0 787 268 3605 163 34 10 chr21 21119888 21120558 -23787012 - L1PA16 LINE L1 -3 6163 5478 562 214 110 19 chr21 21120703 21120857 -23786713 + MSTB2 LTR MaLR 1 168 -289 294 73 0 0 chr21 21120977 21121018 -23786552 + (TG)n Simple_repeat Simple_repeat 1 41 0 1948 157 44 46 chr21 21121336 21121454 -23786116 - MER61D LTR ERV1 0 501 384 2278 98 0 16 chr21 21121454 21121771 -23785799 + AluSx SINE Alu 1 312 0 1948 157 44 46 chr21 21121771 21122041 -23785529 - MER61D LTR ERV1 -117 384 114 633 221 59 0 chr21 21122651 21122810 -23784760 - MSTC LTR MaLR -229 167 1 376 222 56 37 chr21 21123103 21123211 -23784359 + MER58 DNA MER1_type 1 110 -105 225 188 83 0 chr21 21123223 21123271 -23784299 + MER58 DNA MER1_type 2369 2420 0 505 361 81 50 chr21 21124361 21124843 -23782727 - MER115 DNA AcHobo -16 677 181 208 169 0 56 chr21 21125123 21125194 -23782376 + (TA)n Simple_repeat Simple_repeat 1 67 0 186 71 0 0 chr21 21125631 21125659 -23781911 + (CAT)n Simple_repeat Simple_repeat 2 29 0 201 39 0 0 chr21 21125763 21125789 -23781781 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6966 57 3 1 chr21 21125789 21127260 -23780310 - L1PA5 LINE L1 -18 6136 4662 270 223 124 8 chr21 21127329 21127450 -23780120 + L1M4 LINE L1 3921 4055 -2091 968 259 81 35 chr21 21127499 21128077 -23779493 + L1M4 LINE L1 4169 4773 -1373 368 291 45 62 chr21 21128272 21128384 -23779186 + L1M4 LINE L1 4845 4957 -1189 204 67 0 0 chr21 21128384 21128414 -23779156 + (TG)n Simple_repeat Simple_repeat 2 31 0 368 291 45 62 chr21 21128414 21128545 -23779025 + L1M4 LINE L1 4957 5084 -1062 1656 232 56 16 chr21 21128668 21129112 -23778458 - MLT1C LTR MaLR 0 467 6 205 339 0 16 chr21 21129225 21129287 -23778283 + L2 LINE L2 3236 3296 -17 455 215 0 0 chr21 21129287 21129366 -23778204 - Tigger7 DNA MER2_type -10 2481 2403 1292 217 27 0 chr21 21129372 21129630 -23777940 - Tigger7 DNA MER2_type -467 266 2 225 0 0 0 chr21 21129633 21129658 -23777912 + (TG)n Simple_repeat Simple_repeat 2 26 0 302 272 146 52 chr21 21129826 21130039 -23777531 - L2 LINE L2 -18 3295 3063 1358 217 204 12 chr21 21130240 21130641 -23776929 + MLT2B1 LTR ERVL 3 480 -40 285 75 0 0 chr21 21130646 21130686 -23776884 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 259 136 17 34 chr21 21130686 21130745 -23776825 + MLT2B1 LTR ERVL 458 515 -5 939 105 0 0 chr21 21131398 21131522 -23776048 - AluSq/x SINE Alu -188 124 1 1138 176 5 50 chr21 21132258 21132347 -23775223 - MER2 DNA MER2_type -134 211 120 2229 79 0 0 chr21 21132347 21132638 -23774932 + AluY SINE Alu 1 291 -20 1138 176 5 50 chr21 21132638 21132769 -23774801 - MER2 DNA MER2_type -225 120 1 6128 155 48 20 chr21 21133374 21133814 -23773756 + Tigger3b DNA MER2_type 21 448 -2580 1897 113 0 90 chr21 21133814 21134158 -23773412 + AluSq SINE Alu 1 313 0 6128 155 48 20 chr21 21134158 21134672 -23772898 + Tigger3b DNA MER2_type 448 947 -2081 2356 97 7 0 chr21 21134672 21134980 -23772590 - AluSg SINE Alu 0 310 1 527 0 16 0 chr21 21134990 21135053 -23772517 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6128 155 48 20 chr21 21135053 21135265 -23772305 + Tigger3b DNA MER2_type 955 1231 0 1394 193 0 72 chr21 21135527 21135848 -23771722 + AluJb SINE Alu 3 300 -12 2042 57 0 0 chr21 21136326 21136590 -23770980 + L1PA7 LINE L1 5891 6154 0 23 68 0 0 chr21 21136746 21136790 -23770780 + AT_rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr21 21137273 21137295 -23770275 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr21 21137523 21137544 -23770026 + AT_rich Low_complexity Low_complexity 1 21 0 40 49 0 0 chr21 21137941 21138002 -23769568 + AT_rich Low_complexity Low_complexity 1 61 0 265 296 0 0 chr21 21138677 21138748 -23768822 + GA-rich Low_complexity Low_complexity 2 72 0 249 136 45 15 chr21 21139074 21139140 -23768430 + (CTATT)n Simple_repeat Simple_repeat 2 69 0 21 0 0 0 chr21 21139527 21139548 -23768022 + AT_rich Low_complexity Low_complexity 1 21 0 2241 96 0 0 chr21 21139869 21140160 -23767410 - AluSg SINE Alu -19 291 1 5966 37 0 0 chr21 21140237 21140946 -23766624 + L1PA3 LINE L1 5445 6153 -2 28 29 0 0 chr21 21141315 21141350 -23766220 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr21 21141456 21141494 -23766076 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr21 21141843 21141866 -23765704 + AT_rich Low_complexity Low_complexity 1 23 0 284 311 72 6 chr21 21142681 21142861 -23764709 + L1MC/D LINE L1 5365 5556 -610 225 226 24 71 chr21 21143100 21143184 -23764386 + L1MC/D LINE L1 5841 5920 -1888 21 0 0 0 chr21 21144434 21144455 -23763115 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 21144799 21144821 -23762749 + AT_rich Low_complexity Low_complexity 1 22 0 210 176 0 0 chr21 21145651 21145702 -23761868 + (TAA)n Simple_repeat Simple_repeat 2 52 0 203 179 0 0 chr21 21145754 21145793 -23761777 + T-rich Low_complexity Low_complexity 6 44 0 241 379 24 8 chr21 21146768 21146892 -23760678 - MIR SINE MIR -62 146 21 231 313 90 52 chr21 21147195 21147406 -23760164 - LTR33 LTR ERVL -90 431 213 1338 191 108 18 chr21 21147804 21148139 -23759431 - MLT1A1 LTR MaLR 0 365 1 499 141 0 0 chr21 21148391 21148469 -23759101 - MADE1 DNA Mariner 0 80 3 34 24 0 0 chr21 21150227 21150268 -23757302 + AT_rich Low_complexity Low_complexity 1 41 0 1029 208 20 9 chr21 21150337 21150599 -23756971 + L1MA1 LINE L1 5942 6211 -91 299 151 23 23 chr21 21150691 21150777 -23756793 + GA-rich Low_complexity Low_complexity 3 88 0 26639 52 4 2 chr21 21150785 21155024 -23752546 + L1PA5 LINE L1 1654 6390 0 1921 140 10 3 chr21 21155227 21155520 -23752050 + AluSx SINE Alu 1 295 -17 243 146 0 0 chr21 21155520 21155561 -23752009 + (TA)n Simple_repeat Simple_repeat 1 41 0 1862 200 11 80 chr21 21155810 21156336 -23751234 + MLT1D LTR MaLR 1 490 -15 312 371 54 42 chr21 21156410 21156650 -23750920 - L2 LINE L2 -389 2925 2683 21 0 0 0 chr21 21156737 21156758 -23750812 + AT_rich Low_complexity Low_complexity 1 21 0 2472 56 0 6 chr21 21157893 21158214 -23749356 - L1PA5 LINE L1 -4 6150 5832 27 0 0 0 chr21 21159347 21159374 -23748196 + AT_rich Low_complexity Low_complexity 1 27 0 2472 45 0 0 chr21 21159701 21159991 -23747579 + AluY SINE Alu 17 306 -5 2294 72 0 13 chr21 21161480 21161787 -23745783 - AluY SINE Alu -8 303 1 33 0 0 0 chr21 21161991 21162024 -23745546 + AT_rich Low_complexity Low_complexity 1 33 0 294 194 50 58 chr21 21162054 21162210 -23745360 - L1ME LINE L1 -267 5854 5689 4202 176 6 14 chr21 21162260 21163039 -23744531 - L1PA16 LINE L1 -7 6159 5387 10411 243 30 20 chr21 21163360 21166482 -23741088 - L1 LINE L1 -771 5375 2225 308 82 96 14 chr21 21166494 21166640 -23740930 + (TA)n Simple_repeat Simple_repeat 1 158 0 305 23 0 23 chr21 21166865 21166908 -23740662 + (TA)n Simple_repeat Simple_repeat 1 42 0 1174 171 3 96 chr21 21166908 21167254 -23740316 - L1PA15-16 LINE L1 -3948 2901 2587 501 274 95 22 chr21 21167296 21167475 -23740095 + MIR SINE MIR 45 236 -26 522 278 120 0 chr21 21167537 21167728 -23739842 - MER58C DNA MER1_type -1 214 1 309 356 22 46 chr21 21168487 21168810 -23738760 - HERVL LTR ERVL -3200 1796 1490 283 367 78 50 chr21 21168999 21169759 -23737811 - HERVL LTR ERVL -3822 1174 394 371 322 92 24 chr21 21170092 21170387 -23737183 - LTR16C LTR ERVL -3 488 174 265 184 13 13 chr21 21171462 21171538 -23736032 + (TA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr21 21171600 21171622 -23735948 + AT_rich Low_complexity Low_complexity 1 22 0 246 294 0 54 chr21 21171780 21171872 -23735698 + MLT1K LTR MaLR 496 582 -6 4715 137 17 0 chr21 21173767 21175165 -23732405 - L1PA12 LINE L1 0 6168 4802 1980 136 8 3 chr21 21175188 21175663 -23731907 + L1P4 LINE L1 4993 5469 -699 1195 242 20 0 chr21 21175659 21175952 -23731618 - L1 LINE L1 -3397 2749 2451 * 28 48 0 0 chr21 21177121 21177163 -23730407 + AT_rich Low_complexity Low_complexity 1 42 0 389 348 93 5 chr21 21177429 21177633 -23729937 + MIR SINE MIR 33 256 -6 183 80 0 0 chr21 21177739 21177764 -23729806 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr21 21178714 21178743 -23728827 + AT_rich Low_complexity Low_complexity 1 29 0 23 97 0 0 chr21 21178825 21178897 -23728673 + AT_rich Low_complexity Low_complexity 1 72 0 1979 126 16 10 chr21 21179182 21179492 -23728078 - AluSx SINE Alu 0 312 1 33 0 0 0 chr21 21179616 21179649 -23727921 + AT_rich Low_complexity Low_complexity 1 33 0 1962 141 0 3 chr21 21181158 21181442 -23726128 + AluSx SINE Alu 5 287 -25 1720 241 13 13 chr21 21181725 21181925 -23725645 - MSTD LTR MaLR -12 384 182 1674 170 3 39 chr21 21181925 21182231 -23725339 + AluSx SINE Alu 1 295 -17 1720 241 13 13 chr21 21182231 21182412 -23725158 - MSTD LTR MaLR -213 183 3 966 294 74 72 chr21 21182451 21183653 -23723917 - HAL1 LINE L1 -3 2504 1300 642 236 26 93 chr21 21183639 21183949 -23723621 - L1MD2 LINE L1 -3 6356 6068 * 339 65 0 0 chr21 21183992 21184038 -23723532 + (TC)n Simple_repeat Simple_repeat 1 46 0 256 308 94 87 chr21 21184384 21184799 -23722771 + L2 LINE L2 2205 2622 -692 277 291 13 25 chr21 21185384 21185463 -23722107 + MIR SINE MIR 39 116 -92 21 0 0 0 chr21 21185714 21185735 -23721835 + AT_rich Low_complexity Low_complexity 1 21 0 530 285 45 14 chr21 21186604 21186825 -23720745 - L1ME1 LINE L1 -5 6161 5934 14412 30 0 0 chr21 21187194 21189687 -23717883 + L1PA3 LINE L1 3663 6155 0 255 353 102 23 chr21 21190774 21191040 -23716530 - L2 LINE L2 -992 2322 2036 1141 142 0 6 chr21 21191113 21191289 -23716281 + AluSg/x SINE Alu 134 308 -4 1319 280 42 62 chr21 21193378 21193956 -23713614 + MLT1E LTR MaLR 25 590 -3 2050 109 0 0 chr21 21194539 21194813 -23712757 + AluSg SINE Alu 1 274 -36 243 0 0 0 chr21 21194816 21194843 -23712727 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 789 219 29 19 chr21 21197336 21197546 -23710024 - MLT1A1 LTR MaLR 0 365 154 1110 132 24 0 chr21 21197619 21197786 -23709784 + AluSc SINE Alu 127 297 -12 765 188 7 7 chr21 21197846 21197990 -23709580 - MLT1A1 LTR MaLR -217 148 5 22 0 0 0 chr21 21198546 21198568 -23709002 + AT_rich Low_complexity Low_complexity 1 22 0 192 281 18 0 chr21 21200621 21200678 -23706892 - MIR SINE MIR -112 150 93 185 333 94 22 chr21 21201142 21201280 -23706290 + L2 LINE L2 1715 1862 -1452 626 304 61 26 chr21 21201352 21201694 -23705876 + L2 LINE L2 2367 2720 -594 326 291 80 40 chr21 21201686 21201837 -23705733 - L2 LINE L2 -1080 2234 2078 * 266 208 85 19 chr21 21201947 21202053 -23705517 + L1MA7 LINE L1 6178 6290 -1 226 122 0 61 chr21 21202165 21202214 -23705356 - L1MC4 LINE L1 -1339 6703 6658 362 109 0 16 chr21 21202237 21202301 -23705269 - L1MA3 LINE L1 0 6305 6243 1944 96 4 4 chr21 21202474 21202744 -23704826 - AluSc SINE Alu -39 270 1 3744 199 56 51 chr21 21202746 21203527 -23704043 - L1M3 LINE L1 -586 5582 4808 1554 188 0 36 chr21 21203527 21203836 -23703734 - AluSx SINE Alu -14 298 1 3744 199 56 51 chr21 21203836 21204394 -23703176 - L1M3 LINE L1 -1360 4808 4255 605 223 0 0 chr21 21204443 21204564 -23703006 + L1 LINE L1 4013 4133 -2013 465 267 173 15 chr21 21204770 21204972 -23702598 - MIR SINE MIR -26 236 3 4098 36 0 0 chr21 21206046 21206540 -23701030 - L1PA4 LINE L1 -3 6152 5659 769 111 86 0 chr21 21206613 21206730 -23700840 - THE1C LTR MaLR -248 127 1 4189 145 43 10 chr21 21206762 21207453 -23700117 - THE1C-int LTR MaLR -14 1566 853 273 57 0 0 chr21 21207595 21207630 -23699940 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 2063 96 3 0 chr21 21207975 21208267 -23699303 + L1PA13 LINE L1 5871 6163 0 2535 196 30 77 chr21 21208323 21208635 -23698935 + MER67C LTR ERV1 39 364 -346 1966 129 0 7 chr21 21208635 21208922 -23698648 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr21 21208922 21208960 -23698610 + (CA)n Simple_repeat Simple_repeat 2 39 0 2535 196 30 77 chr21 21208960 21209351 -23698219 + MER67C LTR ERV1 362 710 0 22 56 0 0 chr21 21209594 21209630 -23697940 + AT_rich Low_complexity Low_complexity 1 36 0 31 68 0 0 chr21 21209639 21209698 -23697872 + AT_rich Low_complexity Low_complexity 1 59 0 905 208 119 27 chr21 21209698 21210123 -23697447 + LTR54 LTR ERV1 1 510 0 21 0 0 0 chr21 21211229 21211250 -23696320 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr21 21211973 21212015 -23695555 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr21 21212210 21212233 -23695337 + AT_rich Low_complexity Low_complexity 1 23 0 13901 170 22 107 chr21 21212793 21213327 -23694243 + L1PB1 LINE L1 16 594 -6971 283 226 12 36 chr21 21213327 21213411 -23694159 - Charlie8 DNA MER1_type -2273 144 63 13901 170 22 107 chr21 21213411 21215381 -23692189 + L1PB1 LINE L1 594 2254 -5311 1792 165 99 12 chr21 21215381 21215726 -23691844 - THE1C LTR MaLR 0 375 1 13901 170 22 107 chr21 21215726 21216491 -23691079 + L1PB1 LINE L1 2254 3083 -4482 5957 159 10 4 chr21 21216486 21218148 -23689422 + L1PB1 LINE L1 5898 7570 0 * 1724 140 8 78 chr21 21218231 21218630 -23688940 + L1MA1 LINE L1 2914 3284 -4281 * 5166 164 23 14 chr21 21218628 21220116 -23687454 + L1MA1 LINE L1 5668 7168 -555 1995 130 42 45 chr21 21220116 21220469 -23687101 + THE1B LTR MaLR 1 352 -12 3511 110 22 4 chr21 21220470 21221017 -23686553 + L1MA1 LINE L1 7163 7719 -2 40 97 0 0 chr21 21221018 21221142 -23686428 + AT_rich Low_complexity Low_complexity 1 124 0 335 295 71 40 chr21 21221985 21222209 -23685361 - L2 LINE L2 -5 3308 3078 237 229 16 49 chr21 21222535 21222596 -23684974 - MLT1I LTR MaLR -276 133 75 416 360 104 8 chr21 21222715 21222965 -23684605 - L2 LINE L2 -510 2804 2531 264 310 40 40 chr21 21223738 21223977 -23683593 - MLT1G1-int LTR MaLR -849 522 292 439 314 129 21 chr21 21224124 21224673 -23682897 - MLT1G1 LTR MaLR -1 589 2 1117 146 5 0 chr21 21224875 21225074 -23682496 + L1PB1 LINE L1 1 200 -6663 3549 106 13 2 chr21 21225076 21226123 -23681447 + L1PB1 LINE L1 636 1830 -5033 3905 95 69 0 chr21 21226123 21226743 -23680827 - L1PBa LINE L1 -4327 2536 1874 * 9818 194 17 26 chr21 21226741 21227371 -23680199 + L1PB1 LINE L1 3589 4223 -2644 189 0 0 0 chr21 21227371 21227392 -23680178 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9818 194 17 26 chr21 21227392 21228281 -23679289 + L1PB1 LINE L1 4223 5118 -1749 181 0 69 0 chr21 21228281 21228310 -23679260 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 9818 194 17 26 chr21 21228310 21230098 -23677472 + L1PB1 LINE L1 5118 6867 0 22 0 0 0 chr21 21230158 21230180 -23677390 + AT_rich Low_complexity Low_complexity 1 22 0 1030 237 255 31 chr21 21230227 21230619 -23676951 + MLT2B1 LTR ERVL 3 482 -38 276 294 75 38 chr21 21231293 21231453 -23676117 - MIR SINE MIR -29 233 68 1225 213 52 21 chr21 21231946 21232069 -23675501 + AluJo SINE Alu 1 119 -193 189 0 0 0 chr21 21232069 21232090 -23675480 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1225 213 52 21 chr21 21232090 21232252 -23675318 + AluJo SINE Alu 119 295 -17 584 143 0 12 chr21 21234547 21234675 -23672895 - L1M LINE L1 -735 5396 5272 490 298 12 7 chr21 21234679 21234837 -23672733 - MIR SINE MIR -63 145 4 6055 98 29 2 chr21 21236237 21237430 -23670140 + L1PA8 LINE L1 4944 6165 -7 22 56 0 0 chr21 21237518 21237554 -23670016 + AT_rich Low_complexity Low_complexity 1 36 0 1604 207 6 55 chr21 21238590 21238938 -23668632 - MLT2B3 LTR ERVL 0 554 224 1716 153 3 38 chr21 21239809 21240123 -23667447 - AluJo SINE Alu -9 303 1 216 167 62 21 chr21 21241107 21241155 -23666415 - L2 LINE L2 -3 3269 3220 198 292 80 53 chr21 21241235 21241348 -23666222 - L2 LINE L2 -8 3305 3190 277 62 42 0 chr21 21243120 21243168 -23664402 + (GA)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr21 21243277 21243299 -23664271 + AT_rich Low_complexity Low_complexity 1 22 0 1192 32 0 26 chr21 21244157 21244311 -23663259 - AluY SINE Alu -10 301 152 1760 336 70 11 chr21 21245197 21246084 -23661486 + L2 LINE L2 1315 2253 -1061 2505 158 95 40 chr21 21246100 21246432 -23661138 - LTR64 LTR ERVK -2 556 183 2261 103 0 0 chr21 21246432 21246742 -23660828 - AluSg SINE Alu 0 310 1 2505 158 95 40 chr21 21246742 21246936 -23660634 - LTR64 LTR ERVK -375 183 1 721 317 93 24 chr21 21246940 21247359 -23660211 + L2 LINE L2 2270 2717 -597 829 330 69 11 chr21 21247365 21247744 -23659826 - LTR16A LTR ERVL -6 444 44 413 349 78 17 chr21 21247788 21248020 -23659550 + L2 LINE L2 2716 2961 -353 258 175 48 0 chr21 21248129 21248192 -23659378 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 882 163 153 6 chr21 21248274 21248530 -23659040 + L1MA3 LINE L1 6011 6302 -3 1852 162 10 3 chr21 21248872 21249181 -23658389 - AluJb SINE Alu -1 311 1 205 237 51 17 chr21 21249238 21249297 -23658273 + MER5A DNA MER1_type 69 129 -60 459 332 66 29 chr21 21249702 21249946 -23657624 + MIR SINE MIR 4 256 -6 201 342 18 44 chr21 21250337 21250451 -23657119 + L2 LINE L2 2864 2974 -340 28 48 0 0 chr21 21251016 21251058 -23656512 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr21 21251166 21251201 -23656369 + AT_rich Low_complexity Low_complexity 1 35 0 1949 68 64 4 chr21 21251419 21251712 -23655858 + AluY SINE Alu 1 309 0 678 161 0 0 chr21 21252129 21252247 -23655323 + L1PA12 LINE L1 5943 6060 -108 2255 137 76 6 chr21 21252259 21252690 -23654880 - LTR12 LTR ERV1 -259 455 1 684 218 35 45 chr21 21252769 21253058 -23654512 - pTR5 LTR ERV1 -1410 1028 743 258 51 0 51 chr21 21253080 21253119 -23654451 - L1PA13 LINE L1 -103 6060 6024 1677 241 102 39 chr21 21253175 21253694 -23653876 + MLT2B3 LTR ERVL 3 554 0 1216 68 0 0 chr21 21253959 21254121 -23653449 - L1PA13 LINE L1 0 6163 6002 278 130 0 19 chr21 21254278 21254332 -23653238 + (CAT)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr21 21256633 21256655 -23650915 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr21 21257059 21257101 -23650469 + AT_rich Low_complexity Low_complexity 1 42 0 220 372 33 25 chr21 21257908 21258029 -23649541 + L2 LINE L2 3151 3272 0 973 47 79 0 chr21 21258445 21258572 -23648998 + MER85 DNA T2_type 1 137 -2 495 286 81 12 chr21 21259210 21259244 -23648326 + MIR SINE MIR 91 121 -141 423 0 0 0 chr21 21259244 21259291 -23648279 + (CA)n Simple_repeat Simple_repeat 2 48 0 495 286 81 12 chr21 21259291 21259417 -23648153 + MIR SINE MIR 121 262 0 21 0 0 0 chr21 21259626 21259647 -23647923 + AT_rich Low_complexity Low_complexity 1 21 0 39 22 0 0 chr21 21259787 21259833 -23647737 + AT_rich Low_complexity Low_complexity 1 46 0 35 0 0 0 chr21 21260299 21260334 -23647236 + AT_rich Low_complexity Low_complexity 1 35 0 388 174 47 34 chr21 21260359 21260508 -23647062 + (TA)n Simple_repeat Simple_repeat 1 151 0 2560 50 0 0 chr21 21260550 21260853 -23646717 + AluY SINE Alu 1 303 -8 198 145 12 60 chr21 21260895 21260978 -23646592 + (TA)n Simple_repeat Simple_repeat 2 80 0 212 167 39 51 chr21 21261002 21261062 -23646508 + (CATATA)n Simple_repeat Simple_repeat 3 63 -16 1743 156 32 27 chr21 21261062 21261433 -23646137 - THE1C LTR MaLR -2 373 1 212 167 39 51 chr21 21261433 21261450 -23646120 + (CATATA)n Simple_repeat Simple_repeat 63 79 0 284 192 50 8 chr21 21261470 21261590 -23645980 + (TA)n Simple_repeat Simple_repeat 1 125 0 1303 217 79 0 chr21 21261593 21261607 -23645963 - L1M2 LINE L1 -689 5623 5612 2166 86 14 0 chr21 21261607 21261925 -23645645 - AluY SINE Alu 0 322 1 1303 217 79 0 chr21 21261925 21262253 -23645317 - L1M2 LINE L1 -700 5612 5254 5639 133 25 24 chr21 21262271 21263289 -23644281 - L1MA2 LINE L1 0 6304 5285 4046 164 48 34 chr21 21263284 21264870 -23642700 - L1PA14 LINE L1 -211 5950 4333 * 7024 141 64 13 chr21 21264865 21266201 -23641369 - L1M1 LINE L1 -4218 3347 1944 2195 110 0 3 chr21 21267755 21268054 -23639516 - AluSq SINE Alu -14 299 2 247 383 16 39 chr21 21268424 21268552 -23639018 + L2 LINE L2 3148 3272 0 21 0 0 0 chr21 21268728 21268749 -23638821 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 21268900 21268928 -23638642 + AT_rich Low_complexity Low_complexity 1 28 0 947 106 0 7 chr21 21268971 21269113 -23638457 + L1PA13 LINE L1 6004 6144 -19 24 0 0 0 chr21 21270555 21270579 -23636991 + AT_rich Low_complexity Low_complexity 1 24 0 417 231 0 11 chr21 21270707 21270798 -23636772 + MLT1B LTR MaLR 83 172 -202 760 247 0 0 chr21 21270845 21271015 -23636555 + MLT1B LTR MaLR 204 373 -17 236 282 46 61 chr21 21271358 21271489 -23636081 + LTR67 LTR ERVL 428 556 -1 25 65 0 0 chr21 21271815 21271861 -23635709 + AT_rich Low_complexity Low_complexity 1 46 0 343 82 16 16 chr21 21272829 21272890 -23634680 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 185 214 43 100 chr21 21273831 21273901 -23633669 - L3b LINE CR1 -257 1326 1261 1974 159 12 3 chr21 21275201 21275535 -23632035 + MER1B DNA MER1_type 1 337 0 294 220 11 11 chr21 21276800 21276891 -23630679 + (TA)n Simple_repeat Simple_repeat 2 92 0 35 24 0 0 chr21 21278060 21278102 -23629468 + AT_rich Low_complexity Low_complexity 1 42 0 339 355 47 28 chr21 21278136 21278347 -23629223 - L2 LINE L2 -9 3304 3090 2867 201 64 63 chr21 21278596 21278719 -23628851 - L1MA10 LINE L1 -11 6323 6202 1782 165 7 13 chr21 21278719 21279022 -23628548 - AluSx SINE Alu -7 305 5 2867 201 64 63 chr21 21279022 21279713 -23627857 - L1MA10 LINE L1 -132 6202 5508 564 247 110 49 chr21 21280366 21280629 -23626941 - L1MC5 LINE L1 -606 7355 7077 1935 208 28 19 chr21 21280682 21281109 -23626461 - MSTB1 LTR MaLR -1 431 1 570 266 89 79 chr21 21281111 21281491 -23626079 - L1MC5 LINE L1 -939 7022 6639 22 35 0 0 chr21 21281607 21281636 -23625934 + AT_rich Low_complexity Low_complexity 1 29 0 1334 213 87 27 chr21 21282102 21282530 -23625040 + MLT1D LTR MaLR 3 497 -8 308 315 103 56 chr21 21282540 21282741 -23624829 - HAL1b LINE L1 -1020 328 107 1660 123 77 39 chr21 21282741 21283026 -23624544 - AluSx SINE Alu -16 296 1 308 315 103 56 chr21 21283026 21283126 -23624444 - HAL1b LINE L1 -1241 107 13 42 57 0 0 chr21 21283306 21283376 -23624194 + AT_rich Low_complexity Low_complexity 1 70 0 180 0 0 0 chr21 21283638 21283658 -23623912 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2024 122 7 0 chr21 21283660 21283948 -23623622 - AluSx SINE Alu -22 290 1 726 284 42 4 chr21 21284079 21284525 -23623045 - L1ME2 LINE L1 -179 5985 5470 1640 183 22 17 chr21 21284662 21285022 -23622548 - L1MA3 LINE L1 -3 6302 5941 1432 222 78 19 chr21 21285448 21285872 -23621698 - MLT1C LTR MaLR -2 465 17 578 305 125 22 chr21 21286200 21286567 -23621003 - L1ME4a LINE L1 -104 6017 5613 927 316 67 32 chr21 21287492 21287985 -23619585 - L2 LINE L2 0 3313 2804 2542 55 0 6 chr21 21288065 21288377 -23619193 - AluY SINE Alu -1 310 1 26 30 0 0 chr21 21288600 21288633 -23618937 + AT_rich Low_complexity Low_complexity 1 33 0 267 133 0 0 chr21 21288854 21288899 -23618671 + (TC)n Simple_repeat Simple_repeat 1 45 0 743 270 37 33 chr21 21288929 21289199 -23618371 + MLT1F1 LTR MaLR 294 564 -3 864 279 20 8 chr21 21289527 21289774 -23617796 - LTR40b LTR ERVL -8 454 205 1332 246 83 39 chr21 21289848 21290332 -23617238 + MLT1D LTR MaLR 1 505 0 3100 257 28 106 chr21 21290339 21291817 -23615753 + MLT1D-int LTR MaLR 8 1370 -1 1480 241 39 52 chr21 21291823 21292263 -23615307 + MLT1D LTR MaLR 6 439 -66 520 281 44 0 chr21 21292315 21292475 -23615095 + MLT1D-int LTR MaLR 444 610 -761 2459 47 0 0 chr21 21292951 21293249 -23614321 + AluY SINE Alu 1 298 -13 429 259 91 107 chr21 21293279 21293654 -23613916 + MLT1D-int LTR MaLR 982 1350 -21 554 339 94 30 chr21 21293679 21294116 -23613454 + MLT1D LTR MaLR 11 475 -67 26 88 0 0 chr21 21294247 21294315 -23613255 + AT_rich Low_complexity Low_complexity 1 68 0 22 35 0 0 chr21 21294628 21294657 -23612913 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 21295490 21295511 -23612059 + AT_rich Low_complexity Low_complexity 1 21 0 2324 73 0 0 chr21 21295598 21295887 -23611683 - AluY SINE Alu -22 289 1 208 218 0 64 chr21 21296088 21296166 -23611404 + T-rich Low_complexity Low_complexity 1 73 0 457 337 33 0 chr21 21296488 21296672 -23610898 + LTR16C LTR ERVL 302 491 0 758 230 11 6 chr21 21298994 21299212 -23608358 - AluJb SINE Alu 0 312 134 878 299 70 28 chr21 21299727 21300004 -23607566 + L1ME2 LINE L1 3120 3384 -2762 2282 96 0 10 chr21 21300004 21300316 -23607254 + AluSc SINE Alu 1 309 0 878 299 70 28 chr21 21300316 21300616 -23606954 + L1ME2 LINE L1 3384 3731 -2415 2113 108 0 0 chr21 21300616 21300904 -23606666 - AluSg SINE Alu -22 288 1 878 299 70 28 chr21 21300904 21300978 -23606592 + L1ME2 LINE L1 3731 3800 -2346 751 308 58 38 chr21 21300980 21301380 -23606190 - LTR41 LTR ERVL -133 640 233 235 288 0 0 chr21 21301624 21301683 -23605887 - LTR41 LTR ERVL -480 293 235 471 205 25 62 chr21 21301794 21301955 -23605615 - LTR41 LTR ERVL -616 157 3 710 281 82 22 chr21 21301955 21302418 -23605152 + L1ME2 LINE L1 4337 4827 -1319 531 236 32 0 chr21 21302484 21302641 -23604929 + L1ME2 LINE L1 5178 5339 -807 5870 127 34 4 chr21 21302647 21303554 -23604016 - L1P LINE L1 -1530 4616 3679 1106 115 6 0 chr21 21303554 21303728 -23603842 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 5870 127 34 4 chr21 21303728 21303756 -23603814 - L1P LINE L1 -2467 3679 3653 5977 108 9 14 chr21 21303758 21305162 -23602408 + L1PA10 LINE L1 4651 6037 -131 2224 69 45 0 chr21 21305162 21305452 -23602118 + AluY SINE Alu 1 303 -8 5977 108 9 14 chr21 21305452 21305584 -23601986 + L1PA10 LINE L1 6037 6168 0 28 0 0 0 chr21 21305584 21305612 -23601958 + AT_rich Low_complexity Low_complexity 1 28 0 1237 214 28 4 chr21 21305624 21305872 -23601698 + AluJo SINE Alu 42 295 -17 377 260 16 8 chr21 21305883 21306006 -23601564 + L1ME2 LINE L1 5769 5892 -272 423 337 80 24 chr21 21307412 21307827 -23599743 + L1MC4a LINE L1 4790 5227 -919 312 179 0 0 chr21 21307877 21307933 -23599637 - L1M2 LINE L1 -657 5643 5588 1137 308 66 10 chr21 21307991 21308569 -23599001 + L1MC4a LINE L1 5317 5926 -1882 4060 95 19 38 chr21 21308833 21309499 -23598071 + L1MA1 LINE L1 5648 6301 -1 25 51 0 0 chr21 21309500 21309539 -23598031 + AT_rich Low_complexity Low_complexity 1 39 0 737 204 70 11 chr21 21309839 21310025 -23597545 - L1MB8 LINE L1 -2 6176 5980 9770 176 53 52 chr21 21310118 21312678 -23594892 - L1MA8 LINE L1 -247 6044 3483 194 62 31 0 chr21 21312678 21312710 -23594860 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 9770 176 53 52 chr21 21312710 21313387 -23594183 - L1MA8 LINE L1 -2808 3483 2808 228 125 0 0 chr21 21313407 21313447 -23594123 + Alu SINE Alu 262 301 -1 1786 137 47 1 chr21 21313465 21313826 -23593744 - MER57B LTR ERV1 -4 430 1 461 158 8 45 chr21 21314034 21314167 -23593403 + CT-rich Low_complexity Low_complexity 3 130 0 23 33 0 0 chr21 21314953 21314983 -23592587 + AT_rich Low_complexity Low_complexity 1 30 0 343 365 95 21 chr21 21316583 21316909 -23590661 + HAL1 LINE L1 1389 1738 -769 426 256 43 17 chr21 21317316 21317433 -23590137 - MLT2E LTR ERVL -457 171 52 1904 243 70 41 chr21 21317833 21318079 -23589491 + L1MB7 LINE L1 5395 5632 -552 201 74 0 0 chr21 21318079 21318106 -23589464 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1904 243 70 41 chr21 21318106 21318117 -23589453 + L1MB7 LINE L1 5632 5641 -543 2483 62 0 0 chr21 21318117 21318424 -23589146 - AluY SINE Alu -4 307 1 1904 243 70 41 chr21 21318424 21318917 -23588653 + L1MB7 LINE L1 5641 6168 -16 251 246 39 45 chr21 21319257 21319436 -23588134 + L1ME LINE L1 5263 5440 -681 1060 283 23 58 chr21 21319998 21320425 -23587145 - MLT1E2 LTR MaLR -8 618 207 1967 132 17 0 chr21 21323012 21323301 -23584269 + AluSp SINE Alu 1 294 -19 21 0 0 0 chr21 21323767 21323788 -23583782 + AT_rich Low_complexity Low_complexity 1 21 0 238 307 23 0 chr21 21325457 21325545 -23582025 + MIR SINE MIR 131 220 -42 28 0 0 0 chr21 21326591 21326619 -23580951 + AT_rich Low_complexity Low_complexity 1 28 0 3619 39 2 0 chr21 21326619 21327060 -23580510 - L1PA4 LINE L1 -3 6152 5711 334 311 110 40 chr21 21327713 21327941 -23579629 + MLT1H1 LTR MaLR 1 244 -311 336 289 123 0 chr21 21328068 21328182 -23579388 + MLT1H1 LTR MaLR 423 550 -5 1149 124 22 5 chr21 21328601 21328786 -23578784 - MER61E LTR ERV1 -42 527 340 270 242 15 30 chr21 21328816 21328882 -23578688 - MER61E LTR ERV1 -388 181 117 * 310 248 0 89 chr21 21328858 21328959 -23578611 - MER61E LTR ERV1 -379 190 99 417 252 24 39 chr21 21328962 21329089 -23578481 - LTR25 LTR ERV1 -438 356 232 231 36 0 0 chr21 21329636 21329664 -23577906 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 82 0 0 chr21 21330955 21331004 -23576566 + AT_rich Low_complexity Low_complexity 1 49 0 794 188 13 148 chr21 21331325 21331629 -23575941 + MLT1B LTR MaLR 81 343 -47 647 297 118 52 chr21 21331672 21332358 -23575212 + L1M4 LINE L1 2945 3675 -2471 344 336 8 8 chr21 21332625 21332756 -23574814 - L3 LINE CR1 -484 1093 963 2101 117 0 37 chr21 21333036 21333361 -23574209 + AluSq SINE Alu 1 313 0 354 280 142 38 chr21 21334851 21335140 -23572430 + L1M4 LINE L1 4525 4843 -1303 258 32 0 0 chr21 21335170 21335201 -23572369 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2660 109 48 0 chr21 21335201 21335621 -23571949 - L1PA13 LINE L1 -7 6156 5717 279 282 40 35 chr21 21335674 21335848 -23571722 + L1M4 LINE L1 4906 5080 -1066 298 227 34 0 chr21 21335970 21336058 -23571512 + L1MC4 LINE L1 6613 6703 -1339 292 181 24 0 chr21 21336059 21336142 -23571428 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 304 300 27 18 chr21 21336143 21336253 -23571317 - L1M4 LINE L1 -6430 112 2 266 264 23 0 chr21 21336289 21336376 -23571194 - L1MC4 LINE L1 -1340 6702 6614 393 119 0 0 chr21 21336448 21336507 -23571063 - FLAM SINE Alu -5 128 70 5687 150 60 20 chr21 21336508 21337221 -23570349 + LOR1a-int LTR ERV1 612 1390 -6730 1503 115 0 5 chr21 21337221 21337430 -23570140 + AluSc SINE Alu 86 293 -16 5687 150 60 20 chr21 21337430 21337866 -23569704 + LOR1a-int LTR ERV1 1390 1807 -6313 * 15171 148 40 27 chr21 21337854 21338821 -23568749 + LOR1a-int LTR ERV1 1940 2893 -5227 1577 203 7 0 chr21 21338821 21339111 -23568459 + AluJb SINE Alu 5 296 -16 15171 148 40 27 chr21 21339111 21340594 -23566976 + LOR1a-int LTR ERV1 2893 4437 -3683 1995 118 3 10 chr21 21340594 21340890 -23566680 - AluSg SINE Alu -16 294 1 15171 148 40 27 chr21 21340890 21341410 -23566160 + LOR1a-int LTR ERV1 4437 4949 -3171 3396 195 5 8 chr21 21341409 21342029 -23565541 + LOR1a-int LTR ERV1 5447 6064 -2056 * 455 130 10 100 chr21 21342028 21342128 -23565442 + LOR1a-int LTR ERV1 8030 8120 0 * 2643 199 15 0 chr21 21342128 21342605 -23564965 + LOR1a LTR ERV1 1 484 -13 681 211 83 0 chr21 21342622 21342802 -23564768 + L1MB3 LINE L1 5979 6173 -10 21 36 0 0 chr21 21343806 21343834 -23563736 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 21344581 21344610 -23562960 + AT_rich Low_complexity Low_complexity 1 29 0 384 307 127 6 chr21 21345808 21345974 -23561596 - MER5A DNA MER1_type -1 188 3 36 62 0 0 chr21 21346182 21346246 -23561324 + AT_rich Low_complexity Low_complexity 1 64 0 369 0 0 0 chr21 21346469 21346510 -23561060 + (TG)n Simple_repeat Simple_repeat 2 42 0 2024 135 33 36 chr21 21347153 21347517 -23560053 - THE1B LTR MaLR -1 363 1 25 31 0 0 chr21 21347695 21347727 -23559843 + AT_rich Low_complexity Low_complexity 1 32 0 222 148 0 37 chr21 21347832 21347913 -23559657 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 477 151 5 43 chr21 21347931 21348116 -23559454 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 202 240 20 0 chr21 21348154 21348204 -23559366 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 1076 206 118 0 chr21 21348224 21348452 -23559118 + MLT1D LTR MaLR 251 505 0 2118 119 3 7 chr21 21349996 21350306 -23557264 - AluSg SINE Alu -1 309 1 2329 178 9 19 chr21 21350398 21350830 -23556740 - MSTC LTR MaLR 0 428 1 307 229 107 49 chr21 21351709 21351831 -23555739 - MLT1J LTR MaLR -152 359 231 334 232 0 53 chr21 21352118 21352213 -23555357 + L1MC4 LINE L1 6614 6703 -1339 435 141 41 8 chr21 21352215 21352336 -23555234 + (TA)n Simple_repeat Simple_repeat 2 126 0 186 43 0 0 chr21 21352567 21352590 -23554980 + (TG)n Simple_repeat Simple_repeat 2 24 0 1913 140 64 20 chr21 21353626 21353984 -23553586 + THE1C LTR MaLR 2 375 0 240 284 110 28 chr21 21354252 21354534 -23553036 + L1M4 LINE L1 4495 4799 -1347 32 75 0 0 chr21 21354822 21354889 -23552681 + AT_rich Low_complexity Low_complexity 1 67 0 249 180 33 0 chr21 21355987 21356048 -23551522 - L1MA10 LINE L1 -1 6333 6271 2234 96 0 0 chr21 21356060 21356340 -23551230 - AluSq SINE Alu -18 295 16 4373 194 28 48 chr21 21356350 21356370 -23551200 - L1MA10 LINE L1 -55 6279 6260 1291 197 3 65 chr21 21356370 21356695 -23550875 - AluJo SINE Alu -7 305 1 4373 194 28 48 chr21 21356695 21357782 -23549788 - L1MA10 LINE L1 -74 6260 5194 2308 143 43 38 chr21 21357782 21358200 -23549370 - MSTC LTR MaLR -8 420 1 749 222 6 0 chr21 21358200 21358380 -23549190 - L1MA10 LINE L1 -1706 4440 4260 256 175 35 0 chr21 21358757 21358814 -23548756 + (TATG)n Simple_repeat Simple_repeat 1 59 0 1140 282 112 23 chr21 21359030 21359604 -23547966 - MLT1E2 LTR MaLR -1 625 1 210 37 0 0 chr21 21359779 21359806 -23547764 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 1461 174 4 4 chr21 21359808 21360067 -23547503 - AluSx SINE Alu -53 259 1 250 24 0 49 chr21 21360074 21360115 -23547455 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1734 167 3 0 chr21 21360118 21360400 -23547170 - AluSq SINE Alu -30 283 1 21 0 0 0 chr21 21360641 21360662 -23546908 + AT_rich Low_complexity Low_complexity 1 21 0 236 370 88 38 chr21 21361413 21361945 -23545625 + L2 LINE L2 2147 2705 -609 229 308 0 26 chr21 21362365 21362443 -23545127 - MIR SINE MIR -121 141 66 324 310 38 38 chr21 21362510 21362694 -23544876 - MLT1E2 LTR MaLR -337 289 106 22 35 0 0 chr21 21362759 21362788 -23544782 + AT_rich Low_complexity Low_complexity 1 29 0 2267 84 0 10 chr21 21362971 21363270 -23544300 + AluSg1 SINE Alu 2 297 -12 2666 188 48 23 chr21 21363318 21364005 -23543565 - L1MA10 LINE L1 -2338 3808 3105 2741 185 32 4 chr21 21364032 21364594 -23542976 + L1 LINE L1 3742 4319 -1827 1131 280 22 55 chr21 21364817 21365327 -23542243 + MER90 LTR ERV1 107 599 -15 6260 121 39 18 chr21 21366187 21367236 -23540334 - MER11C LTR ERVK 0 1071 1 530 274 34 7 chr21 21368567 21368713 -23538857 - MER58B DNA MER1_type 0 341 192 636 290 31 0 chr21 21368861 21369023 -23538547 + MER58B DNA MER1_type 175 341 0 26 0 0 0 chr21 21369233 21369259 -23538311 + AT_rich Low_complexity Low_complexity 1 26 0 1726 131 8 78 chr21 21370240 21370607 -23536963 - MER4A LTR ERV1 -1 663 264 635 111 10 20 chr21 21370616 21370715 -23536855 - MER4A LTR ERV1 -566 98 1 3836 131 45 20 chr21 21370723 21371420 -23536150 - MER4A-int LTR ERV1 -4 6594 5881 * 8805 129 53 16 chr21 21371417 21373034 -23534536 - MER4A-int LTR ERV1 -1046 5552 3875 * 11451 121 152 117 chr21 21373027 21374816 -23532754 - MER4A-int LTR ERV1 -3118 3480 1754 2012 147 0 0 chr21 21374816 21375101 -23532469 - AluSg SINE Alu -25 285 1 11451 121 152 117 chr21 21375101 21375678 -23531892 - MER4A-int LTR ERV1 -4844 1754 1198 2177 112 0 0 chr21 21375678 21375973 -23531597 + AluSc SINE Alu 1 295 -14 11451 121 152 117 chr21 21375973 21376969 -23530601 - MER4A-int LTR ERV1 -5400 1198 1 1579 130 161 98 chr21 21376972 21377350 -23530220 - MER4A LTR ERV1 0 664 263 612 144 0 10 chr21 21377350 21377447 -23530123 - MER4A LTR ERV1 -566 98 3 22 35 0 0 chr21 21377460 21377489 -23530081 + AT_rich Low_complexity Low_complexity 1 29 0 47 0 0 0 chr21 21377555 21377602 -23529968 + AT_rich Low_complexity Low_complexity 1 47 0 7104 23 0 4 chr21 21377840 21378671 -23528899 - L1PA3 LINE L1 -5 6150 5323 465 200 11 0 chr21 21378790 21378880 -23528690 - MER46B DNA MER2_type 0 236 146 241 228 10 10 chr21 21378880 21378981 -23528589 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 1656 159 4 0 chr21 21379037 21379308 -23528262 - MER46B DNA MER2_type -79 157 11 21 57 0 0 chr21 21379869 21379904 -23527666 + AT_rich Low_complexity Low_complexity 1 35 0 422 313 90 10 chr21 21381032 21381233 -23526337 - MIR SINE MIR 0 262 46 231 266 47 0 chr21 21381665 21381729 -23525841 + MLT1I LTR MaLR 343 409 0 2091 102 6 42 chr21 21382646 21382959 -23524611 + AluSx SINE Alu 2 303 -9 23 0 0 0 chr21 21382999 21383022 -23524548 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr21 21384791 21384817 -23522753 + (CATA)n Simple_repeat Simple_repeat 2 27 0 1819 128 0 43 chr21 21385143 21385448 -23522122 - AluSg SINE Alu -18 292 1 26 82 0 0 chr21 21387310 21387371 -23520199 + AT_rich Low_complexity Low_complexity 1 61 0 869 223 98 48 chr21 21387858 21388194 -23519376 + MER57A LTR ERV1 42 394 -9 1772 212 57 9 chr21 21388275 21388714 -23518856 - L1MB1 LINE L1 0 6168 5709 21 0 0 0 chr21 21388714 21388735 -23518835 + AT_rich Low_complexity Low_complexity 1 21 0 1279 39 0 0 chr21 21390455 21390610 -23516960 - AluY SINE Alu 0 311 157 243 340 32 19 chr21 21390900 21391056 -23516514 + MLT1L LTR MaLR 99 256 -359 37 0 0 0 chr21 21394535 21394572 -23512998 + AT_rich Low_complexity Low_complexity 1 37 0 336 318 95 44 chr21 21394579 21394991 -23512579 - HsTC2 DNA Tc2 -2 1896 1288 275 241 164 17 chr21 21395003 21395119 -23512451 - HsTC2 DNA Tc2 -1762 136 4 1985 111 7 0 chr21 21395913 21396193 -23511377 + AluSp SINE Alu 1 282 -31 242 93 0 23 chr21 21396196 21396239 -23511331 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 189 74 0 0 chr21 21396669 21396696 -23510874 + (CA)n Simple_repeat Simple_repeat 2 28 0 7716 98 24 9 chr21 21398743 21399888 -23507682 - L1PA7 LINE L1 -1196 4950 3789 6802 69 1 1 chr21 21399888 21401088 -23506482 + L1PA7 LINE L1 4955 6154 0 407 274 0 20 chr21 21401331 21401484 -23506086 + (TA)n Simple_repeat Simple_repeat 1 150 0 1541 185 7 16 chr21 21401724 21402032 -23505538 - AluJo SINE Alu -5 307 3 21 0 0 0 chr21 21402124 21402145 -23505425 + AT_rich Low_complexity Low_complexity 1 21 0 2035 150 0 0 chr21 21402977 21403277 -23504293 + AluSx SINE Alu 1 300 -12 305 216 33 0 chr21 21403781 21403934 -23503636 + (CATATA)n Simple_repeat Simple_repeat 2 159 0 363 307 67 22 chr21 21404138 21404363 -23503207 - MIR SINE MIR 0 262 28 1720 167 78 23 chr21 21404368 21404715 -23502855 - MSTC LTR MaLR -7 421 56 216 0 0 0 chr21 21404730 21404754 -23502816 + (TA)n Simple_repeat Simple_repeat 1 24 0 323 224 18 6 chr21 21404809 21404979 -23502591 + (TA)n Simple_repeat Simple_repeat 1 172 0 192 200 0 0 chr21 21405017 21405072 -23502498 + (TA)n Simple_repeat Simple_repeat 2 56 0 320 217 12 12 chr21 21405089 21405255 -23502315 + (TA)n Simple_repeat Simple_repeat 1 166 0 905 232 90 41 chr21 21405290 21405635 -23501935 + MLT1A1 LTR MaLR 1 362 -3 249 376 51 17 chr21 21405656 21405773 -23501797 - L2 LINE L2 -2 3270 3150 745 234 85 49 chr21 21405902 21406209 -23501361 + L1ME1 LINE L1 5571 5888 -278 23 54 0 0 chr21 21407037 21407074 -23500496 + AT_rich Low_complexity Low_complexity 1 37 0 277 342 103 39 chr21 21407776 21408010 -23499560 - MIR SINE MIR -13 249 1 22 56 0 0 chr21 21408490 21408526 -23499044 + AT_rich Low_complexity Low_complexity 1 36 0 1587 228 37 21 chr21 21408746 21409123 -23498447 - MLT1B LTR MaLR -7 383 1 334 331 36 36 chr21 21409265 21409546 -23498024 - L1MC/D LINE L1 -1992 5816 5536 318 364 66 18 chr21 21410747 21410975 -23496595 + L1MEc LINE L1 786 1024 -5372 341 328 142 10 chr21 21411099 21411303 -23496267 - L1MEc LINE L1 -5089 1307 1077 11246 191 23 9 chr21 21411328 21413495 -23494075 - Tigger4(Zombi) DNA MER2_type -533 2198 2 667 278 73 39 chr21 21413538 21414251 -23493319 + L1MEc LINE L1 2669 3405 -2810 2556 242 70 36 chr21 21414349 21414905 -23492665 + MER21B LTR ERV1 19 624 -239 1892 176 17 14 chr21 21414905 21415251 -23492319 + MER7A DNA MER2_type 1 345 -1 2556 242 70 36 chr21 21415251 21415489 -23492081 + MER21B LTR ERV1 624 852 -11 18247 197 38 11 chr21 21415599 21420213 -23487357 + L1M1 LINE L1 12 4754 -2811 2252 157 29 41 chr21 21420250 21420734 -23486836 + L1MA3 LINE L1 5823 6300 -5 366 270 196 28 chr21 21420805 21421131 -23486439 + L1M1 LINE L1 4918 5298 -2267 21 0 0 0 chr21 21421205 21421226 -23486344 + AT_rich Low_complexity Low_complexity 1 21 0 392 272 92 74 chr21 21421300 21421583 -23485987 + L1M1 LINE L1 5485 5772 -1793 373 372 27 24 chr21 21421606 21421899 -23485671 + L1MCc LINE L1 184 477 -5946 2011 128 125 8 chr21 21422028 21422388 -23485182 + MSTA LTR MaLR 27 428 0 23 33 0 0 chr21 21423345 21423375 -23484195 + AT_rich Low_complexity Low_complexity 1 30 0 458 268 0 32 chr21 21423493 21423616 -23483954 + FLAM_A SINE Alu 5 123 -10 480 318 97 54 chr21 21424962 21425466 -23482104 + HAL1 LINE L1 863 1388 -1119 369 320 170 0 chr21 21425873 21426026 -23481544 - MER5A DNA MER1_type -1 188 10 2090 128 3 3 chr21 21426416 21426722 -23480848 - AluSq SINE Alu -7 306 1 22 80 0 0 chr21 21427011 21427061 -23480509 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chr21 21427818 21427858 -23479712 + AT_rich Low_complexity Low_complexity 1 40 0 1457 168 118 3 chr21 21429295 21429616 -23477954 + MER46B DNA MER2_type 1 233 -3 350 56 0 19 chr21 21429862 21429916 -23477654 + (TG)n Simple_repeat Simple_repeat 1 53 0 1090 263 88 66 chr21 21430339 21431450 -23476120 - L1MCa LINE L1 -4328 2794 1442 3648 148 24 0 chr21 21431450 21432067 -23475503 + L1PA16 LINE L1 5526 6157 -9 797 219 16 16 chr21 21432074 21432257 -23475313 + AluJo SINE Alu 120 302 -10 1349 250 51 76 chr21 21432261 21432595 -23474975 - L1MCa LINE L1 -4975 1448 1136 475 288 98 29 chr21 21432595 21432800 -23474770 - MER20 DNA MER1_type 0 219 1 1349 250 51 76 chr21 21432800 21433110 -23474460 - L1MCa LINE L1 -5287 1136 820 290 252 67 22 chr21 21433498 21433633 -23473937 - L1MCa LINE L1 -6273 150 10 713 176 0 8 chr21 21433670 21433801 -23473769 + FLAM_C SINE Alu 9 138 -5 289 278 166 59 chr21 21433880 21434049 -23473521 + MIR SINE MIR 76 262 0 282 29 0 0 chr21 21434821 21434856 -23472714 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2061 95 0 18 chr21 21434856 21435139 -23472431 - AluSg SINE Alu -32 278 1 720 0 0 0 chr21 21435612 21435692 -23471878 + (TA)n Simple_repeat Simple_repeat 1 80 0 198 0 0 0 chr21 21436085 21436107 -23471463 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1875 109 0 76 chr21 21436109 21436413 -23471157 - AluSx SINE Alu -30 282 2 25 0 0 0 chr21 21436581 21436606 -23470964 + AT_rich Low_complexity Low_complexity 1 25 0 28 95 0 0 chr21 21436722 21436806 -23470764 + AT_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr21 21436936 21436978 -23470592 + AT_rich Low_complexity Low_complexity 1 42 0 1018 164 130 105 chr21 21437911 21438264 -23469306 - MLT1A1 LTR MaLR 0 365 4 24 0 0 0 chr21 21438738 21438762 -23468808 + AT_rich Low_complexity Low_complexity 1 24 0 6491 68 16 0 chr21 21439080 21440223 -23467347 + L1PA7 LINE L1 4990 6146 -8 237 65 0 0 chr21 21441491 21441522 -23466048 + (GA)n Simple_repeat Simple_repeat 2 32 0 340 290 85 40 chr21 21442155 21442331 -23465239 - MER5A DNA MER1_type -4 185 2 1340 151 104 53 chr21 21443315 21443672 -23463898 - THE1C LTR MaLR 0 375 1 8532 161 17 37 chr21 21443672 21445283 -23462287 - THE1C-int LTR MaLR 0 1580 3 1554 142 72 70 chr21 21445285 21445659 -23461911 - THE1C LTR MaLR 0 375 1 580 239 83 17 chr21 21446689 21446869 -23460701 + LTR47A LTR ERVL 261 452 0 606 261 136 57 chr21 21447091 21447428 -23460142 - MER57A LTR ERV1 -21 380 18 264 91 0 0 chr21 21447430 21447474 -23460096 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2243 80 7 0 chr21 21447476 21447764 -23459806 - AluY SINE Alu -21 290 1 22 88 0 0 chr21 21448276 21448333 -23459237 + AT_rich Low_complexity Low_complexity 1 57 0 30 27 0 0 chr21 21448431 21448468 -23459102 + AT_rich Low_complexity Low_complexity 1 37 0 553 319 50 19 chr21 21448728 21449052 -23458518 + MLT2F LTR ERVL 7 385 -278 249 211 0 0 chr21 21449653 21449710 -23457860 + (TA)n Simple_repeat Simple_repeat 2 58 0 24 32 0 0 chr21 21449716 21449747 -23457823 + AT_rich Low_complexity Low_complexity 1 31 0 1117 116 130 28 chr21 21450104 21450319 -23457251 - L1PA13 LINE L1 -4 6159 5923 22 56 0 0 chr21 21451220 21451256 -23456314 + AT_rich Low_complexity Low_complexity 1 36 0 2248 268 118 72 chr21 21451370 21453274 -23454296 - L1MEc LINE L1 -4356 2040 51 21 0 0 0 chr21 21453324 21453345 -23454225 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 21453642 21453664 -23453906 + AT_rich Low_complexity Low_complexity 1 22 0 2350 66 23 7 chr21 21453664 21453969 -23453601 + AluY SINE Alu 1 310 -1 23 0 0 0 chr21 21454029 21454052 -23453518 + AT_rich Low_complexity Low_complexity 1 23 0 38 89 0 0 chr21 21454216 21454317 -23453253 + AT_rich Low_complexity Low_complexity 1 101 0 22 0 0 0 chr21 21454776 21454798 -23452772 + AT_rich Low_complexity Low_complexity 1 22 0 223 244 0 0 chr21 21455037 21455082 -23452488 + MIR SINE MIR 154 198 -64 539 315 85 41 chr21 21455327 21455968 -23451602 + ERVL LTR ERVL 1510 2203 -3561 383 319 38 70 chr21 21455964 21456334 -23451236 + ERVL LTR ERVL 4547 4904 -860 * 268 288 12 0 chr21 21456521 21456601 -23450969 + ERVL LTR ERVL 5206 5286 -478 25 31 0 0 chr21 21456695 21456727 -23450843 + AT_rich Low_complexity Low_complexity 1 32 0 437 330 72 26 chr21 21456882 21457076 -23450494 + MER63A DNA MER1_type 8 210 0 296 313 24 0 chr21 21457077 21457160 -23450410 + MLT1G3 LTR MaLR 21 105 -490 508 244 108 27 chr21 21457268 21457440 -23450130 + MLT1G3 LTR MaLR 181 425 -165 1258 274 70 40 chr21 21457967 21458413 -23449157 + LTR40b LTR ERVL 4 462 0 22 0 0 0 chr21 21458658 21458680 -23448890 + AT_rich Low_complexity Low_complexity 1 22 0 272 70 23 0 chr21 21459587 21459630 -23447940 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 185 356 50 50 chr21 21459804 21459964 -23447606 - MIR SINE MIR -56 206 47 1179 173 89 0 chr21 21460082 21460330 -23447240 + L1MA4A LINE L1 6030 6299 -4 21 0 0 0 chr21 21461443 21461464 -23446106 + AT_rich Low_complexity Low_complexity 1 21 0 855 230 15 15 chr21 21462314 21462514 -23445056 - MER58A DNA MER1_type -15 209 10 6616 134 20 5 chr21 21462691 21464296 -23443274 + L1MA1 LINE L1 4662 6290 -12 22 0 0 0 chr21 21464299 21464321 -23443249 + AT_rich Low_complexity Low_complexity 1 22 0 2161 38 0 0 chr21 21464924 21465187 -23442383 + L1PA5 LINE L1 5886 6148 -6 331 300 62 45 chr21 21465736 21466073 -23441497 + L1ME LINE L1 3353 3695 -2451 25 51 0 0 chr21 21466465 21466504 -23441066 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr21 21466636 21466665 -23440905 + AT_rich Low_complexity Low_complexity 1 29 0 486 229 109 42 chr21 21466904 21467096 -23440474 - MER20 DNA MER1_type -14 205 1 440 336 59 24 chr21 21467248 21467620 -23439950 + L1ME LINE L1 4918 5302 -844 233 0 62 0 chr21 21467679 21467711 -23439859 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 321 339 54 27 chr21 21467761 21467982 -23439588 + L1ME LINE L1 5386 5612 -558 22 94 0 0 chr21 21468094 21468158 -23439412 + AT_rich Low_complexity Low_complexity 1 64 0 1387 227 10 10 chr21 21469012 21469311 -23438259 + AluJo SINE Alu 3 301 -11 26 74 0 0 chr21 21469479 21469533 -23438037 + AT_rich Low_complexity Low_complexity 1 54 0 190 237 175 88 chr21 21469538 21469652 -23437918 - L2 LINE L2 -16 3297 3174 330 219 0 0 chr21 21469765 21469829 -23437741 - MER112 DNA MER1_type -37 223 160 299 313 100 13 chr21 21470092 21470242 -23437328 - MIR SINE MIR -10 252 90 372 239 121 4 chr21 21471671 21471911 -23435659 - MLT1G3 LTR MaLR -91 451 167 392 244 104 17 chr21 21472130 21472360 -23435210 - L1ME LINE L1 -5100 970 721 618 230 99 21 chr21 21472379 21472570 -23435000 - MLT1D LTR MaLR 0 505 300 225 0 0 0 chr21 21473128 21473153 -23434417 + (TG)n Simple_repeat Simple_repeat 2 26 0 312 27 0 0 chr21 21473404 21473441 -23434129 + (GA)n Simple_repeat Simple_repeat 1 37 0 306 0 0 0 chr21 21473440 21473474 -23434096 + (TG)n Simple_repeat Simple_repeat 2 35 0 * 316 255 20 31 chr21 21474470 21474568 -23433002 + L1MC4 LINE L1 6609 6705 -1337 549 192 0 0 chr21 21474568 21474698 -23432872 + (TA)n Simple_repeat Simple_repeat 2 131 0 210 320 21 21 chr21 21475228 21475325 -23432245 - MIR SINE MIR -106 156 60 1594 170 190 22 chr21 21475747 21476147 -23431423 - MLT1C LTR MaLR 0 467 1 1596 192 50 21 chr21 21477051 21477389 -23430181 + MER7A DNA MER2_type 1 346 0 183 331 218 8 chr21 21477791 21477915 -23429655 - MER5A DNA MER1_type -1 188 39 407 229 110 26 chr21 21478168 21478388 -23429182 + MER63D DNA MER1_type 143 442 -619 618 198 0 8 chr21 21478393 21478514 -23429056 + MER63D DNA MER1_type 658 777 -283 967 263 12 8 chr21 21478515 21478762 -23428808 - MLT1C LTR MaLR -1 466 219 1770 234 93 53 chr21 21478762 21479459 -23428111 - MER50 LTR ERV1 0 734 10 474 246 77 31 chr21 21479466 21479661 -23427909 - MLT1C LTR MaLR -246 221 18 210 389 0 0 chr21 21479762 21479834 -23427736 - L2 LINE L2 0 3313 3242 398 384 54 22 chr21 21479861 21480231 -23427339 - L2 LINE L2 -48 3265 2884 2143 213 77 21 chr21 21481720 21482278 -23425292 - MER92B LTR ERV1 -47 589 1 359 323 174 13 chr21 21484502 21484657 -23422913 + MER5A DNA MER1_type 10 189 0 288 298 7 57 chr21 21486260 21486401 -23421169 - MIR SINE MIR -3 259 126 378 345 27 27 chr21 21486858 21487006 -23420564 + L2 LINE L2 2567 2714 -600 492 282 24 12 chr21 21487090 21487260 -23420310 + HAL1 LINE L1 1572 1743 -764 301 221 0 96 chr21 21487816 21487952 -23419618 - LTR38B LTR ERV1 -487 123 1 491 319 55 34 chr21 21487995 21488434 -23419136 + HAL1 LINE L1 1770 2217 -290 3096 97 0 26 chr21 21488791 21488841 -23418729 - MLT2A1 LTR ERVL 0 444 394 657 69 0 0 chr21 21488841 21488928 -23418642 + (CA)n Simple_repeat Simple_repeat 2 88 0 3096 97 0 26 chr21 21488928 21489333 -23418237 - MLT2A1 LTR ERVL -50 394 1 22 0 0 0 chr21 21489354 21489376 -23418194 + AT_rich Low_complexity Low_complexity 1 22 0 1419 300 18 14 chr21 21489966 21490520 -23417050 + L1MB2 LINE L1 904 1459 -4682 259 268 0 0 chr21 21490507 21490604 -23416966 + L1MB2 LINE L1 3318 3414 -2796 * 1755 215 38 21 chr21 21490608 21491027 -23416543 - Tigger2a DNA MER2_type -8 426 1 1315 286 17 0 chr21 21491059 21491475 -23416095 + L1MB2 LINE L1 3413 3835 -2375 4176 225 37 20 chr21 21491531 21492496 -23415074 + L1MB2 LINE L1 4212 5160 -1075 1875 150 26 83 chr21 21492496 21492882 -23414688 + THE1B LTR MaLR 1 364 0 4176 225 37 20 chr21 21492882 21493403 -23414167 + L1MB2 LINE L1 5160 6199 -36 3253 263 96 38 chr21 21493455 21493788 -23413782 + L1M4 LINE L1 15 327 -6215 1788 172 42 11 chr21 21493788 21494143 -23413427 - MER47A DNA MER2_type 0 366 1 3253 263 96 38 chr21 21494143 21495292 -23412278 + L1M4 LINE L1 327 1582 -4960 399 306 6 6 chr21 21495274 21495431 -23412139 + L1M4 LINE L1 1939 2095 -4551 * 1442 266 68 27 chr21 21495441 21496464 -23411106 + L1M4 LINE L1 2205 3267 -3377 655 203 23 56 chr21 21496452 21496569 -23411001 + L1M4 LINE L1 5633 5741 -915 * 1944 158 18 12 chr21 21496569 21496904 -23410666 + MER1B DNA MER1_type 1 337 0 655 203 23 56 chr21 21496904 21497019 -23410551 + L1M4 LINE L1 5741 5858 -798 949 256 3 85 chr21 21497063 21497380 -23410190 - MLT1E2 LTR MaLR -335 291 1 315 0 0 0 chr21 21497394 21497429 -23410141 + (CA)n Simple_repeat Simple_repeat 2 36 0 2166 300 104 29 chr21 21498429 21499350 -23408220 + L1MDb LINE L1 151 1140 -5403 2490 244 56 33 chr21 21499397 21500417 -23407153 + L1MDb LINE L1 2087 3082 -3458 183 42 0 0 chr21 21500417 21500441 -23407129 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2249 85 0 0 chr21 21500448 21500783 -23406787 + AluSc SINE Alu 1 335 0 2490 244 56 33 chr21 21500783 21501221 -23406349 + L1MDb LINE L1 3087 3583 -2957 22 56 0 0 chr21 21502578 21502614 -23404956 + AT_rich Low_complexity Low_complexity 1 36 0 449 303 14 0 chr21 21503052 21503194 -23404376 + MLT1H LTR MaLR 18 161 -388 453 305 6 18 chr21 21503322 21503489 -23404081 + MLT1H LTR MaLR 383 547 -2 2065 119 3 13 chr21 21505792 21506094 -23401476 + AluSx SINE Alu 1 299 -13 372 133 0 0 chr21 21506434 21506494 -23401076 + (CA)n Simple_repeat Simple_repeat 1 60 0 1916 165 16 19 chr21 21506612 21506988 -23400582 + THE1C LTR MaLR 1 375 0 275 267 50 22 chr21 21507183 21507363 -23400207 - L1M4 LINE L1 -3047 3099 2915 24 0 0 0 chr21 21507363 21507387 -23400183 + AT_rich Low_complexity Low_complexity 1 24 0 246 122 24 0 chr21 21507411 21507452 -23400118 - L1M4 LINE L1 -3325 2821 2780 870 278 95 73 chr21 21507612 21509488 -23398082 - L1ME3A LINE L1 -193 5977 4060 269 309 64 13 chr21 21509560 21509796 -23397774 - L1ME3A LINE L1 -2238 3908 3661 251 299 0 55 chr21 21509876 21510003 -23397567 - LTR16A1 LTR ERVL -92 365 246 1823 266 31 0 chr21 21510737 21511158 -23396412 + Tigger7 DNA MER2_type 1 434 -299 270 191 265 0 chr21 21511168 21511236 -23396334 + Tigger7 DNA MER2_type 2405 2490 -1 3816 75 2 0 chr21 21512532 21513027 -23394543 + L1PA8 LINE L1 5649 6144 -28 403 74 0 0 chr21 21513027 21513081 -23394489 - U2 snRNA snRNA -134 54 1 396 0 0 0 chr21 21513105 21513149 -23394421 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1363 241 101 15 chr21 21513192 21513587 -23393983 + MLT1C LTR MaLR 37 465 -2 30 0 0 0 chr21 21513879 21513909 -23393661 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr21 21514112 21514137 -23393433 + AT_rich Low_complexity Low_complexity 1 25 0 259 207 0 0 chr21 21515297 21515355 -23392215 + MER4-int LTR ERV1 1105 1162 -5436 456 216 0 0 chr21 21515358 21515460 -23392110 + (TATG)n Simple_repeat Simple_repeat 1 102 0 264 221 10 9 chr21 21515460 21515563 -23392007 - L1MCa LINE L1 -1339 6983 2006 262 267 47 0 chr21 21515491 21515577 -23391993 + L1MC4 LINE L1 6614 6703 -1339 * 245 109 73 18 chr21 21515564 21515619 -23391951 + L1MCa LINE L1 2006 2063 -4363 * 306 73 0 0 chr21 21515619 21515660 -23391910 + (CA)n Simple_repeat Simple_repeat 2 42 0 2274 104 0 0 chr21 21515667 21515965 -23391605 - AluSg SINE Alu -12 298 1 2051 133 39 30 chr21 21516707 21517068 -23390502 - THE1B LTR MaLR 0 364 1 388 336 51 0 chr21 21517150 21517287 -23390283 + L2 LINE L2 3165 3308 -5 29 0 0 0 chr21 21517287 21517316 -23390254 + AT_rich Low_complexity Low_complexity 1 29 0 840 307 16 27 chr21 21517910 21518211 -23389359 - MLT1D LTR MaLR 0 505 220 2003 141 36 33 chr21 21519107 21519468 -23388102 + THE1B LTR MaLR 1 362 -2 10638 123 4 7 chr21 21519470 21521054 -23386516 + THE1B-int LTR MaLR 1 1580 0 1703 147 48 65 chr21 21521054 21521409 -23386161 + THE1B LTR MaLR 1 349 -15 4705 182 24 50 chr21 21521472 21522106 -23385464 + L1MC2 LINE L1 5211 5803 -541 2142 114 0 0 chr21 21522106 21522396 -23385174 + AluSq SINE Alu 13 302 -11 4705 182 24 50 chr21 21522396 21522917 -23384653 + L1MC2 LINE L1 5803 6336 -8 2562 116 13 51 chr21 21522988 21523461 -23384109 - L1MA3 LINE L1 0 6305 5851 2102 113 0 23 chr21 21523758 21524059 -23383511 - AluSg SINE Alu -16 294 1 22 0 0 0 chr21 21524371 21524393 -23383177 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr21 21525993 21526035 -23381535 + AT_rich Low_complexity Low_complexity 1 42 0 251 299 18 85 chr21 21527108 21527272 -23380298 - L1ME3A LINE L1 -50 6120 5968 1543 145 12 8 chr21 21527366 21527614 -23379956 + AluSx SINE Alu 46 294 -18 608 301 110 50 chr21 21527634 21527848 -23379722 - L1MC5 LINE L1 -472 7489 7289 216 0 0 0 chr21 21527848 21527872 -23379698 + (TG)n Simple_repeat Simple_repeat 2 25 0 608 301 110 50 chr21 21527872 21528472 -23379098 - L1MC5 LINE L1 -672 7289 6626 682 69 20 0 chr21 21528489 21528590 -23378980 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 1878 129 14 7 chr21 21529216 21529502 -23378068 + AluSx SINE Alu 13 300 -12 30 59 0 0 chr21 21529505 21529556 -23378014 + AT_rich Low_complexity Low_complexity 1 51 0 1861 140 14 10 chr21 21529850 21530166 -23377404 + AluSx SINE Alu 1 312 0 1995 158 0 15 chr21 21530275 21530617 -23376953 + MER1B DNA MER1_type 1 337 0 2790 246 126 36 chr21 21531496 21532739 -23374831 - L1ME1 LINE L1 -66 6911 5781 1950 134 7 17 chr21 21532739 21533031 -23374539 + AluSx SINE Alu 1 289 -23 2790 246 126 36 chr21 21533031 21533355 -23374215 - L1ME1 LINE L1 -1196 5781 5487 2102 4 0 32 chr21 21533355 21533601 -23373969 - AluYa5 SINE Alu -4 307 70 2790 246 126 36 chr21 21533601 21533942 -23373628 - L1ME1 LINE L1 -1490 5487 4851 958 261 42 48 chr21 21533944 21534300 -23373270 - MLT1A1 LTR MaLR -2 363 10 481 247 31 19 chr21 21534309 21534471 -23373099 - L1ME1 LINE L1 -2102 4855 4692 * 2001 295 63 7 chr21 21534463 21535970 -23371600 - L1ME1 LINE L1 -5188 1671 9 228 250 0 0 chr21 21537256 21537312 -23370258 - L1ME LINE L1 -732 5430 5375 1033 303 51 14 chr21 21537353 21538055 -23369515 - L1ME LINE L1 -846 5300 4573 24 53 0 0 chr21 21539925 21539963 -23367607 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr21 21540335 21540356 -23367214 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 21540587 21540615 -23366955 + AT_rich Low_complexity Low_complexity 1 28 0 721 250 56 0 chr21 21542089 21542285 -23365285 + MER3 DNA MER1_type 1 207 -2 1174 254 31 163 chr21 21542747 21544187 -23363383 - MLT1A1-int LTR MaLR -1 1370 5 260 293 142 19 chr21 21544201 21544307 -23363263 - MLT1E LTR MaLR -474 119 1 218 278 56 0 chr21 21544728 21544782 -23362788 - L2 LINE L2 0 3272 3216 642 136 35 0 chr21 21545146 21545315 -23362255 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 464 342 26 16 chr21 21545669 21545859 -23361711 - MIR SINE MIR -34 228 37 22 56 0 0 chr21 21546280 21546316 -23361254 + AT_rich Low_complexity Low_complexity 1 36 0 886 341 78 23 chr21 21547239 21548039 -23359531 - HERV16 LTR ERVL -1906 3090 2620 303 146 27 36 chr21 21548364 21548474 -23359096 + (TTATA)n Simple_repeat Simple_repeat 3 111 0 225 0 0 0 chr21 21548495 21548520 -23359050 + (CA)n Simple_repeat Simple_repeat 2 26 0 1901 140 36 18 chr21 21548540 21548875 -23358695 - MER46B DNA MER2_type -4 232 17 246 351 0 0 chr21 21548898 21548972 -23358598 + (CATA)n Simple_repeat Simple_repeat 3 76 0 4171 112 69 21 chr21 21549045 21549794 -23357776 - LTR1 LTR ERV1 0 785 1 351 377 36 36 chr21 21550224 21550505 -23357065 - HERV16 LTR ERVL -3420 1576 1296 270 315 68 0 chr21 21550624 21550697 -23356873 - L2 LINE L2 -392 2922 2845 246 237 0 0 chr21 21550706 21550782 -23356788 + (TA)n Simple_repeat Simple_repeat 1 76 0 209 227 78 7 chr21 21550855 21551009 -23356561 + (TA)n Simple_repeat Simple_repeat 2 166 0 315 369 65 40 chr21 21551073 21551425 -23356145 - L2 LINE L2 -505 2809 2449 530 322 0 9 chr21 21551483 21551697 -23355873 + L1MC4 LINE L1 7689 7900 -142 548 350 25 37 chr21 21551750 21551988 -23355582 - L2 LINE L2 -786 2528 2294 2557 205 23 5 chr21 21551988 21552549 -23355021 - L1PB4 LINE L1 -2 6154 5584 548 350 25 37 chr21 21552549 21552664 -23354906 - L2 LINE L2 -1020 2294 2179 22 0 0 0 chr21 21554691 21554713 -23352857 + AT_rich Low_complexity Low_complexity 1 22 0 326 279 108 18 chr21 21554855 21554966 -23352604 + L2 LINE L2 3193 3313 0 212 132 73 0 chr21 21555403 21555471 -23352099 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 2067 158 28 17 chr21 21556344 21556704 -23350866 + THE1B LTR MaLR 1 364 0 1188 33 0 13 chr21 21557961 21558112 -23349458 + L1PA2 LINE L1 6007 6155 0 30 0 0 0 chr21 21558618 21558648 -23348922 + AT_rich Low_complexity Low_complexity 1 30 0 726 251 86 24 chr21 21558696 21559148 -23348422 + MLT1E1 LTR MaLR 6 564 -90 1974 114 3 29 chr21 21560035 21560351 -23347219 - AluSc SINE Alu -1 308 1 21 36 0 0 chr21 21560660 21560688 -23346882 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr21 21560840 21560877 -23346693 + AT_rich Low_complexity Low_complexity 1 37 0 2251 63 17 3 chr21 21561175 21561475 -23346095 + AluY SINE Alu 1 304 -7 549 91 0 0 chr21 21561658 21561735 -23345835 - L1PA14 LINE L1 -2 6159 6083 232 158 0 0 chr21 21561738 21561776 -23345794 + L1PA14 LINE L1 6033 6070 -91 201 237 0 0 chr21 21561942 21562001 -23345569 + (CA)n Simple_repeat Simple_repeat 1 59 0 1373 281 61 39 chr21 21563809 21564634 -23342936 + L1MC4 LINE L1 7199 8041 -1 1961 139 4 0 chr21 21564696 21565006 -23342564 - AluSx SINE Alu 0 311 1 257 367 8 0 chr21 21565016 21565136 -23342434 - L2 LINE L2 -607 2707 2587 226 308 98 30 chr21 21565267 21565400 -23342170 - L2 LINE L2 -946 2368 2227 213 302 23 23 chr21 21565487 21565573 -23341997 - L2 LINE L2 -1291 2023 1938 1525 205 124 21 chr21 21565573 21565992 -23341578 - MLT1C LTR MaLR -3 464 3 2046 147 99 13 chr21 21566032 21566426 -23341144 + MSTA LTR MaLR 1 428 0 8575 157 6 41 chr21 21566430 21568063 -23339507 + MSTA-int LTR MaLR 5 1580 0 1828 171 83 39 chr21 21568063 21568473 -23339097 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr21 21568990 21569026 -23338544 + AT_rich Low_complexity Low_complexity 1 36 0 2006 92 0 20 chr21 21569337 21569629 -23337941 + AluY SINE Alu 26 311 0 23 33 0 0 chr21 21569934 21569964 -23337606 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr21 21570302 21570335 -23337235 + AT_rich Low_complexity Low_complexity 1 33 0 195 100 0 0 chr21 21570418 21570448 -23337122 + (TTA)n Simple_repeat Simple_repeat 3 32 0 181 429 0 8 chr21 21570990 21571109 -23336461 + MIR SINE MIR 30 147 -61 243 312 28 35 chr21 21571139 21571280 -23336290 + MIR SINE MIR 1 140 -122 226 146 18 36 chr21 21574520 21574575 -23332995 + A-rich Low_complexity Low_complexity 2 55 0 204 140 40 20 chr21 21574951 21575001 -23332569 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 2493 55 0 0 chr21 21575222 21575531 -23332039 - AluY SINE Alu -2 309 1 441 132 0 0 chr21 21575558 21575626 -23331944 - L1M4 LINE L1 -1313 4833 4766 2007 159 11 24 chr21 21575732 21576110 -23331460 + THE1C LTR MaLR 1 373 -2 959 215 56 9 chr21 21576716 21576949 -23330621 + AluJb SINE Alu 41 284 -28 22 35 0 0 chr21 21576949 21576978 -23330592 + AT_rich Low_complexity Low_complexity 1 29 0 326 232 23 102 chr21 21577038 21577215 -23330355 + L1M1 LINE L1 3091 3253 -4312 815 235 98 41 chr21 21577269 21577554 -23330016 + L1M1 LINE L1 3384 3725 -3915 270 360 0 55 chr21 21578725 21578889 -23328681 + L2 LINE L2 3159 3313 0 524 267 12 30 chr21 21578927 21579092 -23328478 + MLT1E LTR MaLR 1 162 -431 229 217 14 22 chr21 21579099 21579237 -23328333 + (TA)n Simple_repeat Simple_repeat 2 138 0 231 36 0 0 chr21 21579253 21579281 -23328289 + (TG)n Simple_repeat Simple_repeat 2 29 0 28 0 0 0 chr21 21579386 21579414 -23328156 + AT_rich Low_complexity Low_complexity 1 28 0 763 293 42 17 chr21 21579414 21579653 -23327917 + MLT1E LTR MaLR 316 560 -33 261 157 0 0 chr21 21580684 21580735 -23326835 + LTR66 LTR ERVL 388 438 -172 217 212 24 6 chr21 21580735 21580905 -23326665 + (TA)n Simple_repeat Simple_repeat 2 174 0 460 216 23 11 chr21 21580918 21581094 -23326476 + (TA)n Simple_repeat Simple_repeat 1 178 0 28 48 0 0 chr21 21581096 21581138 -23326432 + AT_rich Low_complexity Low_complexity 1 42 0 368 182 34 3 chr21 21581141 21581822 -23325748 + (TA)n Simple_repeat Simple_repeat 1 701 0 2225 85 7 0 chr21 21581822 21582105 -23325465 - AluSc SINE Alu -24 285 1 585 203 56 14 chr21 21582211 21582354 -23325216 + L1M4 LINE L1 5092 5240 -906 566 117 9 54 chr21 21582367 21582478 -23325092 + FLAM_C SINE Alu 34 139 -4 493 310 50 20 chr21 21584322 21584522 -23323048 + MER63A DNA MER1_type 1 206 -4 22 35 0 0 chr21 21584943 21584972 -23322598 + AT_rich Low_complexity Low_complexity 1 29 0 2249 178 29 5 chr21 21585217 21585628 -23321942 - LOR1b LTR ERV1 0 461 41 181 271 26 90 chr21 21585693 21585848 -23321722 + L2 LINE L2 3092 3236 -77 815 232 81 9 chr21 21585858 21586069 -23321501 - MLT1E1 LTR MaLR -13 641 416 4136 172 30 17 chr21 21586078 21586674 -23320896 - LTR39 LTR ERV1 -7 776 166 2321 100 0 0 chr21 21586674 21586974 -23320596 - AluSq SINE Alu -12 301 2 4136 172 30 17 chr21 21586974 21587143 -23320427 - LTR39 LTR ERV1 -617 166 1 278 355 70 15 chr21 21587143 21587314 -23320256 - MLT1E1 LTR MaLR -243 350 165 1636 186 53 24 chr21 21587314 21587652 -23319918 - MER7A DNA MER2_type 0 346 1 278 355 70 15 chr21 21587652 21587680 -23319890 - MLT1E1 LTR MaLR -428 165 140 754 192 29 87 chr21 21587684 21587892 -23319678 + MER21B LTR ERV1 1 196 -667 1060 211 28 106 chr21 21587951 21588273 -23319297 - AluJo SINE Alu -15 297 1 557 297 95 46 chr21 21588423 21588770 -23318800 + MER21B LTR ERV1 376 739 -124 486 273 24 42 chr21 21588807 21588972 -23318598 - MLT1E1 LTR MaLR -492 162 1 942 147 0 0 chr21 21589153 21589296 -23318274 - AluSg/x SINE Alu -16 296 154 4563 53 3 33 chr21 21589301 21589905 -23317665 - LTR10C LTR ERV1 -5 586 1 1002 172 0 0 chr21 21589905 21590062 -23317508 - AluSq SINE Alu -156 157 1 2306 117 27 16 chr21 21590270 21590639 -23316931 - THE1C LTR MaLR 0 375 3 8870 137 42 42 chr21 21590641 21592221 -23315349 - THE1C-int LTR MaLR 0 1580 1 2185 157 13 16 chr21 21592221 21592597 -23314973 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr21 21593549 21593587 -23313983 + AT_rich Low_complexity Low_complexity 1 38 0 290 274 0 0 chr21 21593747 21593809 -23313761 - MIR SINE MIR -90 172 111 761 306 42 37 chr21 21594037 21594495 -23313075 - LTR40b LTR ERVL -2 460 1 281 314 34 17 chr21 21594976 21595094 -23312476 - LTR33 LTR ERVL -59 462 343 335 329 68 44 chr21 21595132 21595427 -23312143 + MLT1H LTR MaLR 31 332 -217 2064 86 35 3 chr21 21596141 21596431 -23311139 + AluSg SINE Alu 1 299 -11 29 28 0 0 chr21 21597563 21597599 -23309971 + AT_rich Low_complexity Low_complexity 1 36 0 3213 166 114 33 chr21 21598034 21598798 -23308772 - LTR1B LTR ERV1 0 826 1 333 0 0 0 chr21 21598826 21598863 -23308707 + (TG)n Simple_repeat Simple_repeat 2 38 0 317 193 0 0 chr21 21599313 21599370 -23308200 - MLT1E3 LTR MaLR 0 624 568 532 295 60 30 chr21 21599415 21599649 -23307921 - MLT1E LTR MaLR -311 282 42 1969 137 0 0 chr21 21600179 21600471 -23307099 + AluSg SINE Alu 1 292 -18 2765 10 0 0 chr21 21601096 21601403 -23306167 + AluYa5 SINE Alu 1 307 -4 339 284 11 0 chr21 21601457 21601552 -23306018 + GA-rich Low_complexity Low_complexity 4 99 0 402 311 0 0 chr21 21601573 21601708 -23305862 - Charlie6 DNA MER1_type -85 3415 3281 28 29 0 0 chr21 21601758 21601793 -23305777 + AT_rich Low_complexity Low_complexity 1 35 0 2260 77 0 10 chr21 21601853 21602177 -23305393 + AluY SINE Alu 1 311 0 1022 74 0 0 chr21 21602934 21603069 -23304501 - AluY SINE Alu -4 307 173 833 181 50 81 chr21 21603187 21603408 -23304162 + MLT2B1 LTR ERVL 299 512 -8 637 240 136 4 chr21 21603427 21603632 -23303938 - Charlie6 DNA MER1_type -2015 1485 1240 207 0 0 0 chr21 21603632 21603655 -23303915 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 637 240 136 4 chr21 21603655 21603699 -23303871 - Charlie6 DNA MER1_type -2260 1240 1203 1395 287 104 44 chr21 21603703 21604543 -23303027 - Charlie6 DNA MER1_type -2577 923 34 21 0 0 0 chr21 21605105 21605126 -23302444 + AT_rich Low_complexity Low_complexity 1 21 0 1880 189 10 31 chr21 21605340 21605731 -23301839 + MLT1B LTR MaLR 8 390 0 1559 204 48 21 chr21 21605787 21606165 -23301405 - MLT1B LTR MaLR 0 390 3 181 282 26 39 chr21 21607767 21607845 -23299725 + L2 LINE L2 3173 3249 -64 1336 193 4 31 chr21 21607867 21608126 -23299444 + AluJb SINE Alu 40 291 -21 772 214 18 145 chr21 21608196 21608460 -23299110 + L1M4 LINE L1 13 212 -6330 1761 152 11 0 chr21 21608460 21608736 -23298834 + AluSc SINE Alu 6 284 -25 772 214 18 145 chr21 21608736 21608864 -23298706 + L1M4 LINE L1 212 355 -6187 1962 140 64 14 chr21 21608907 21609264 -23298306 + THE1C LTR MaLR 1 375 0 9346 134 30 36 chr21 21609264 21610853 -23296717 + THE1C-int LTR MaLR 1 1580 0 1073 187 160 14 chr21 21610897 21611191 -23296379 + THE1C LTR MaLR 24 360 -4 2000 258 38 41 chr21 21611196 21611885 -23295685 + L1M4 LINE L1 451 1137 -5405 1449 242 44 5 chr21 21611920 21612349 -23295221 + L1M4 LINE L1 1107 1552 -4990 1050 284 108 32 chr21 21612360 21612825 -23294745 - MLT1D LTR MaLR -5 500 1 1078 263 99 19 chr21 21612826 21613312 -23294258 + L1M4 LINE L1 1550 2074 -4572 503 313 35 19 chr21 21613312 21613683 -23293887 + L1M4 LINE L1 2278 2654 -3992 2060 287 63 28 chr21 21613714 21615310 -23292260 + L1M4 LINE L1 2751 4436 -2208 400 262 16 0 chr21 21615327 21615449 -23292121 + L1M4 LINE L1 4761 4884 -1760 * 447 188 0 0 chr21 21615441 21615526 -23292044 - L1 LINE L1 -1514 4632 4548 * 636 239 75 18 chr21 21615522 21615748 -23291822 + L1M4 LINE L1 4882 5120 -1524 1683 206 83 81 chr21 21615776 21616321 -23291249 - MLT2B3 LTR ERVL 0 554 9 778 293 17 7 chr21 21616339 21616636 -23290934 + L1M4 LINE L1 5323 5622 -1022 23 0 0 0 chr21 21616918 21616941 -23290629 + AT_rich Low_complexity Low_complexity 1 23 0 2325 77 0 0 chr21 21618293 21618590 -23288980 + AluY SINE Alu 1 297 -14 868 297 77 79 chr21 21619352 21620382 -23287188 + L1M4 LINE L1 3802 4829 -1317 1220 264 40 8 chr21 21620469 21620871 -23286699 + L1MD2 LINE L1 937 1351 -5189 740 282 85 39 chr21 21620867 21621430 -23286140 + L1MD2 LINE L1 4825 5413 -1127 * 3218 256 28 27 chr21 21622468 21623588 -23283982 + L1MD2 LINE L1 5420 6537 -216 200 326 56 34 chr21 21624303 21624392 -23283178 + MIR SINE MIR 16 106 -102 23 0 0 0 chr21 21625696 21625719 -23281851 + AT_rich Low_complexity Low_complexity 1 23 0 243 219 16 16 chr21 21626514 21626578 -23280992 + L1MDa LINE L1 1875 1938 -4602 1553 214 3 3 chr21 21626583 21626887 -23280683 + AluJo SINE Alu 6 309 -3 1777 268 53 35 chr21 21627047 21627843 -23279727 - L1ME1 LINE L1 -6 6160 5325 2070 122 0 3 chr21 21627843 21628137 -23279433 - AluSg SINE Alu -17 293 1 1777 268 53 35 chr21 21628137 21628507 -23279063 - L1ME1 LINE L1 -841 5325 4963 194 248 9 0 chr21 21628545 21628654 -23278916 + (TA)n Simple_repeat Simple_repeat 1 110 0 307 246 54 0 chr21 21628696 21628863 -23278707 + (TA)n Simple_repeat Simple_repeat 1 176 0 635 260 96 70 chr21 21628904 21629331 -23278239 - L1ME1 LINE L1 -1200 4946 4509 376 222 69 19 chr21 21629448 21629583 -23277987 + LTR49-int LTR ERV1 288 1940 -5597 517 264 12 16 chr21 21629615 21629783 -23277787 + LTR49-int LTR ERV1 354 1589 -4674 517 330 123 18 chr21 21629995 21630392 -23277178 + L2 LINE L2 2818 3256 -57 30 45 0 0 chr21 21630589 21630633 -23276937 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr21 21630674 21630697 -23276873 + AT_rich Low_complexity Low_complexity 1 23 0 2494 118 3 6 chr21 21631261 21631626 -23275944 - THE1B LTR MaLR 0 364 1 2123 129 0 0 chr21 21631908 21632210 -23275360 + AluY SINE Alu 2 303 -8 263 332 118 14 chr21 21632427 21632638 -23274932 - MLT1J LTR MaLR -143 368 136 2044 55 0 12 chr21 21632963 21633218 -23274352 + AluY SINE Alu 32 283 -28 1008 86 0 0 chr21 21633218 21633358 -23274212 + (TA)n Simple_repeat Simple_repeat 2 141 0 566 281 117 5 chr21 21634991 21635187 -23272383 + MIR SINE MIR 31 248 -14 189 107 0 0 chr21 21635448 21635476 -23272094 + (T)n Simple_repeat Simple_repeat 1 28 0 1975 114 7 4 chr21 21635640 21636001 -23271569 + AluSx SINE Alu 1 362 0 1596 187 14 7 chr21 21636139 21636433 -23271137 - AluSg SINE Alu -14 296 1 207 281 0 0 chr21 21637708 21637790 -23269780 + (TA)n Simple_repeat Simple_repeat 2 83 0 789 229 52 52 chr21 21637853 21637882 -23269688 - MER58A DNA MER1_type -2207 213 185 1440 180 32 42 chr21 21637882 21638193 -23269377 - AluSg SINE Alu -2 308 1 789 229 52 52 chr21 21638193 21638373 -23269197 - MER58A DNA MER1_type -2234 186 4 26 50 0 0 chr21 21638615 21638655 -23268915 + AT_rich Low_complexity Low_complexity 1 40 0 343 216 29 29 chr21 21639548 21639650 -23267920 + L1MC5 LINE L1 7001 7102 -859 24 85 0 0 chr21 21641059 21641118 -23266452 + AT_rich Low_complexity Low_complexity 1 59 0 304 173 0 0 chr21 21641558 21641610 -23265960 - MIR SINE MIR 0 262 211 277 244 15 46 chr21 21641981 21642112 -23265458 + L1M4 LINE L1 3170 3296 -2850 987 245 77 73 chr21 21642315 21642982 -23264588 + L1MC5 LINE L1 6512 7191 -770 23 0 0 0 chr21 21643187 21643210 -23264360 + AT_rich Low_complexity Low_complexity 1 23 0 652 256 47 23 chr21 21644513 21644728 -23262842 - MER58A DNA MER1_type -4 220 1 877 310 65 46 chr21 21644810 21645449 -23262121 - L2 LINE L2 -114 3199 2550 21 0 0 0 chr21 21645666 21645687 -23261883 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr21 21646353 21646388 -23261182 + AT_rich Low_complexity Low_complexity 1 35 0 428 156 107 107 chr21 21647623 21647745 -23259825 + FRAM SINE Alu 40 161 -15 1500 225 100 8 chr21 21647881 21648272 -23259298 + MLT1D LTR MaLR 79 505 0 21 36 0 0 chr21 21648735 21648763 -23258807 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr21 21649427 21649462 -23258108 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr21 21649697 21649741 -23257829 + AT_rich Low_complexity Low_complexity 1 44 0 2453 69 0 3 chr21 21649833 21650136 -23257434 + AluY SINE Alu 1 302 -9 2182 110 0 16 chr21 21651146 21651456 -23256114 - AluSc SINE Alu -4 305 1 27 49 0 0 chr21 21651530 21651571 -23255999 + AT_rich Low_complexity Low_complexity 1 41 0 2006 102 3 14 chr21 21651920 21652213 -23255357 - AluY SINE Alu -21 290 1 1231 183 0 21 chr21 21652791 21653031 -23254539 + AluJo SINE Alu 1 235 -77 345 310 174 33 chr21 21653249 21653462 -23254108 + MLT1G1 LTR MaLR 337 579 -16 3080 166 31 23 chr21 21654316 21654923 -23252647 + MER50 LTR ERV1 1 612 -122 1869 121 0 38 chr21 21654924 21655058 -23252512 + AluSg SINE Alu 1 139 -171 2211 75 0 0 chr21 21655058 21655379 -23252191 + AluY SINE Alu 1 321 0 1869 121 0 38 chr21 21655379 21655532 -23252038 + AluSg SINE Alu 139 278 -32 1532 120 39 17 chr21 21655560 21655794 -23251776 + AluSq SINE Alu 1 239 -74 956 224 71 7 chr21 21656640 21656935 -23250635 - MER33 DNA MER1_type -5 319 6 209 292 0 0 chr21 21658017 21658082 -23249488 + (TA)n Simple_repeat Simple_repeat 1 65 0 230 104 0 62 chr21 21658082 21658130 -23249440 - L1MC4 LINE L1 -1339 6703 6659 272 207 24 37 chr21 21658206 21658288 -23249282 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chr21 21658503 21658526 -23249044 + AT_rich Low_complexity Low_complexity 1 23 0 1094 82 0 0 chr21 21659406 21659553 -23248017 + AluY SINE Alu 165 311 0 25 0 0 0 chr21 21659793 21659818 -23247752 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 21659969 21659990 -23247580 + AT_rich Low_complexity Low_complexity 1 21 0 584 98 33 45 chr21 21659990 21660235 -23247335 + (TATAA)n Simple_repeat Simple_repeat 1 242 0 25 51 0 0 chr21 21660278 21660317 -23247253 + AT_rich Low_complexity Low_complexity 1 39 0 378 265 26 17 chr21 21660344 21660461 -23247109 - MER5B DNA MER1_type -59 119 2 282 326 54 0 chr21 21660869 21660961 -23246609 + MLT1J LTR MaLR 205 301 -210 181 300 0 0 chr21 21661118 21661168 -23246402 - MIR SINE MIR 0 262 213 261 197 0 0 chr21 21661352 21661418 -23246152 + (TA)n Simple_repeat Simple_repeat 1 66 0 946 259 92 48 chr21 21661592 21661897 -23245673 + MSTD LTR MaLR 1 328 -68 1649 186 10 0 chr21 21661897 21661909 -23245661 - AluJb SINE Alu -15 297 287 432 51 0 0 chr21 21661909 21661968 -23245602 + (TG)n Simple_repeat Simple_repeat 2 60 0 1649 186 10 0 chr21 21661968 21662245 -23245325 - AluJb SINE Alu -25 287 5 946 259 92 48 chr21 21662245 21662318 -23245252 + MSTD LTR MaLR 328 396 0 3541 257 36 76 chr21 21662320 21663352 -23244218 + MSTD-int LTR MaLR 2 912 -739 627 141 0 0 chr21 21663352 21663451 -23244119 - HY3 scRNA scRNA -1 100 2 3541 257 36 76 chr21 21663451 21664150 -23243420 + MSTD-int LTR MaLR 912 1637 -14 1330 214 103 35 chr21 21664162 21664532 -23243038 + MSTD LTR MaLR 2 396 0 1931 231 69 29 chr21 21665546 21665972 -23241598 - L1M4 LINE L1 -1455 4691 4227 2387 69 0 10 chr21 21665972 21666278 -23241292 - AluY SINE Alu -8 303 1 1931 231 69 29 chr21 21666278 21666517 -23241053 - L1M4 LINE L1 -1919 4227 3999 2154 136 31 8 chr21 21666588 21666941 -23240629 + THE1B LTR MaLR 4 364 0 309 51 0 0 chr21 21667544 21667583 -23239987 + (CA)n Simple_repeat Simple_repeat 1 39 0 309 51 0 0 chr21 21667583 21667622 -23239948 + (TA)n Simple_repeat Simple_repeat 1 39 0 494 43 14 0 chr21 21667795 21667864 -23239706 + (TC)n Simple_repeat Simple_repeat 1 70 0 29 28 0 0 chr21 21668883 21668919 -23238651 + AT_rich Low_complexity Low_complexity 1 36 0 222 191 0 0 chr21 21669730 21669777 -23237793 + (CA)n Simple_repeat Simple_repeat 2 48 0 204 211 0 0 chr21 21670116 21670154 -23237416 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 204 226 16 32 chr21 21670311 21670373 -23237197 + (TG)n Simple_repeat Simple_repeat 2 62 0 27 0 0 0 chr21 21670971 21670998 -23236572 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr21 21671656 21671678 -23235892 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr21 21672791 21672827 -23234743 + (TG)n Simple_repeat Simple_repeat 2 37 0 653 284 63 8 chr21 21672859 21673098 -23234472 + LTR16C LTR ERVL 192 443 -48 554 290 49 13 chr21 21673618 21673842 -23233728 - LTR16C LTR ERVL -50 441 210 3320 228 36 49 chr21 21674084 21674300 -23233270 - L1MA9 LINE L1 -38 6274 6057 1945 157 0 3 chr21 21674300 21674612 -23232958 + AluSx SINE Alu 1 311 -1 3320 228 36 49 chr21 21674612 21675699 -23231871 - L1MA9 LINE L1 -255 6057 4996 21 57 0 0 chr21 21675808 21675843 -23231727 + AT_rich Low_complexity Low_complexity 1 35 0 279 54 0 0 chr21 21678332 21678369 -23229201 + (TG)n Simple_repeat Simple_repeat 2 38 0 1454 269 99 10 chr21 21679064 21679770 -23227800 - L1MD3 LINE L1 -14 7981 7113 2010 137 65 6 chr21 21679816 21680152 -23227418 - THE1B LTR MaLR -8 356 1 357 277 157 6 chr21 21680179 21680345 -23227225 + LTR52 LTR ERVL 4 194 -227 22 88 0 0 chr21 21680471 21680528 -23227042 + AT_rich Low_complexity Low_complexity 1 57 0 352 159 0 0 chr21 21680537 21680600 -23226970 - L1MA3 LINE L1 0 6305 6243 2782 222 26 17 chr21 21680655 21681055 -23226515 + MER6 DNA MER2_type 5 414 -451 2823 93 65 12 chr21 21681055 21681444 -23226126 + MLT2A2 LTR ERVL 1 417 -36 213 39 0 0 chr21 21681444 21681470 -23226100 + (TA)n Simple_repeat Simple_repeat 2 27 0 2823 93 65 12 chr21 21681470 21681510 -23226060 + MLT2A2 LTR ERVL 417 453 0 2782 222 26 17 chr21 21681510 21681713 -23225857 + MER6 DNA MER2_type 414 614 -251 2295 168 42 65 chr21 21681716 21682283 -23225287 - LTR64 LTR ERVK -4 554 1 765 228 69 55 chr21 21682701 21683504 -23224066 - MER4-int LTR ERV1 -1729 4017 2477 302 108 74 14 chr21 21683506 21683654 -23223916 + (TA)n Simple_repeat Simple_repeat 1 157 0 3901 135 97 45 chr21 21683657 21684448 -23223122 - LTR13 LTR ERVK -167 840 9 3063 181 36 86 chr21 21684449 21685874 -23221696 - MER4-int LTR ERV1 -6225 1895 866 4291 230 26 54 chr21 21684800 21685455 -23222115 - LTR57-int LTR ERVL -3747 1596 995 1913 161 76 15 chr21 21685455 21685797 -23221773 + THE1B LTR MaLR 2 364 0 4291 230 26 54 chr21 21685797 21686465 -23221105 - LTR57-int LTR ERVL -4348 995 310 1987 189 41 93 chr21 21687407 21687810 -23219760 - LTR64 LTR ERVK 0 558 135 2791 16 0 0 chr21 21687810 21688120 -23219450 + AluY SINE Alu 1 310 -1 1987 189 41 93 chr21 21688120 21688131 -23219439 - LTR64 LTR ERVK -423 135 125 2495 52 7 0 chr21 21688131 21688438 -23219132 + AluY SINE Alu 1 309 -2 1987 189 41 93 chr21 21688438 21688611 -23218959 - LTR64 LTR ERVK -433 125 1 1319 130 7 59 chr21 21688611 21688881 -23218689 + MER6 DNA MER2_type 610 865 0 2332 280 60 21 chr21 21690957 21691495 -23216075 - L1MDa LINE L1 -2453 4087 3571 1749 172 151 0 chr21 21691495 21691867 -23215703 - MSTA LTR MaLR 0 428 1 2332 280 60 21 chr21 21691867 21692729 -23214841 - L1MDa LINE L1 -2969 3571 2633 374 263 89 51 chr21 21692744 21693060 -23214510 - L1MDa LINE L1 -3956 2584 2257 22 56 0 0 chr21 21693412 21693448 -23214122 + AT_rich Low_complexity Low_complexity 1 36 0 1730 262 84 56 chr21 21693448 21694632 -23212938 - L1MDa LINE L1 -4327 2213 996 331 340 27 20 chr21 21694917 21695067 -23212503 - L1M4 LINE L1 -4967 1575 1425 30 27 0 0 chr21 21695498 21695535 -23212035 + AT_rich Low_complexity Low_complexity 1 37 0 232 280 27 0 chr21 21696878 21696953 -23210617 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 1858 132 0 31 chr21 21697151 21697438 -23210132 + AluSx SINE Alu 3 280 -32 190 0 32 32 chr21 21697438 21697469 -23210101 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1815 209 43 24 chr21 21697636 21698056 -23209514 + MSTC LTR MaLR 1 428 0 1247 160 0 0 chr21 21699160 21699373 -23208197 + L1PB1 LINE L1 5931 6143 -8 1193 138 0 20 chr21 21699394 21699590 -23207980 + AluSc SINE Alu 118 309 0 2117 93 45 7 chr21 21700228 21700517 -23207053 + AluSx SINE Alu 3 302 -10 21 36 0 0 chr21 21700573 21700601 -23206969 + AT_rich Low_complexity Low_complexity 1 28 0 1922 87 80 0 chr21 21700927 21701191 -23206379 + AluSc SINE Alu 11 295 -14 22 0 0 0 chr21 21702524 21702546 -23205024 + AT_rich Low_complexity Low_complexity 1 22 0 1896 128 0 21 chr21 21702546 21702835 -23204735 - AluSg SINE Alu -27 283 1 360 242 11 11 chr21 21703622 21703717 -23203853 + L1MD2 LINE L1 6263 6357 -2 1543 270 64 56 chr21 21704699 21705395 -23202175 - L1ME1 LINE L1 0 6166 5463 2852 123 7 2 chr21 21705395 21705835 -23201735 - L1PB1 LINE L1 -7 6144 5703 1543 270 64 56 chr21 21705835 21706060 -23201510 - L1ME1 LINE L1 -703 5463 5241 309 263 0 13 chr21 21706064 21706140 -23201430 + MER57A LTR ERV1 42 116 -287 1856 90 6 100 chr21 21706160 21706471 -23201099 + AluSx SINE Alu 1 282 -30 305 93 19 0 chr21 21706495 21706549 -23201021 + (TA)n Simple_repeat Simple_repeat 2 56 0 455 253 75 78 chr21 21706550 21706861 -23200709 + MER57A LTR ERV1 124 403 0 319 167 17 0 chr21 21706862 21706922 -23200648 - L1ME1 LINE L1 -893 5253 5193 1116 309 125 29 chr21 21706926 21707735 -23199835 + L2 LINE L2 2442 3313 0 27 0 0 0 chr21 21708100 21708127 -23199443 + AT_rich Low_complexity Low_complexity 1 27 0 2570 110 21 5 chr21 21708585 21708967 -23198603 + MLT2A1 LTR ERVL 1 388 -56 207 0 0 0 chr21 21708970 21708993 -23198577 + (TG)n Simple_repeat Simple_repeat 2 24 0 204 149 0 40 chr21 21709010 21709084 -23198486 + (TA)n Simple_repeat Simple_repeat 2 72 0 284 241 0 26 chr21 21709098 21709214 -23198356 + (TA)n Simple_repeat Simple_repeat 1 113 0 41 48 0 0 chr21 21710333 21710395 -23197175 + AT_rich Low_complexity Low_complexity 1 62 0 332 316 97 61 chr21 21711392 21711867 -23195703 + L1M4 LINE L1 3875 4366 -1780 181 297 14 40 chr21 21711867 21711941 -23195629 - L2 LINE L2 -2 3311 3240 352 306 61 78 chr21 21711945 21712305 -23195265 + L1M4 LINE L1 4468 4821 -1325 270 291 0 0 chr21 21712418 21712473 -23195097 + L1 LINE L1 401 455 -7111 209 33 33 0 chr21 21712473 21712503 -23195067 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2654 261 41 32 chr21 21712560 21713716 -23193854 + L1 LINE L1 3344 4516 -3049 2005 146 0 3 chr21 21713723 21714024 -23193546 + AluSx SINE Alu 1 300 -12 1607 215 15 0 chr21 21714035 21714370 -23193200 - Tigger2a DNA MER2_type -1 433 94 251 198 49 12 chr21 21714386 21714467 -23193103 - L1 LINE L1 -2883 3263 3180 470 195 0 0 chr21 21714528 21714605 -23192965 + Tigger2a DNA MER2_type 1 77 -357 4366 231 23 24 chr21 21714606 21715855 -23191715 + L1 LINE L1 5559 6806 -759 306 324 0 9 chr21 21715855 21715963 -23191607 + MER63A DNA MER1_type 103 209 -1 53 69 0 0 chr21 21715976 21716078 -23191492 + AT_rich Low_complexity Low_complexity 1 102 0 21 0 0 0 chr21 21716575 21716596 -23190974 + AT_rich Low_complexity Low_complexity 1 21 0 361 36 18 18 chr21 21717306 21717362 -23190208 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 39 38 0 0 chr21 21717454 21717507 -23190063 + AT_rich Low_complexity Low_complexity 1 53 0 1031 328 78 28 chr21 21717611 21718295 -23189275 + L1MEc LINE L1 15 768 -5628 228 67 0 0 chr21 21718295 21718325 -23189245 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1031 328 78 28 chr21 21718325 21718651 -23188919 + L1MEc LINE L1 768 1076 -5320 31 26 0 0 chr21 21718651 21718689 -23188881 + AT_rich Low_complexity Low_complexity 1 38 0 1567 83 0 5 chr21 21718691 21718908 -23188662 + L1MA2 LINE L1 6062 6277 -27 239 196 18 0 chr21 21718912 21718968 -23188602 + L1MEc LINE L1 1068 1124 -5272 258 247 13 26 chr21 21719801 21719878 -23187692 - MER94 DNA DNA 0 134 59 405 282 253 0 chr21 21720196 21720370 -23187200 + MIR SINE MIR 14 231 -31 1469 205 0 17 chr21 21720562 21720864 -23186706 + AluJo SINE Alu 3 299 -13 2016 123 133 38 chr21 21721623 21721795 -23185775 + MSTA LTR MaLR 1 155 -273 2098 72 4 4 chr21 21721795 21722073 -23185497 + AluY SINE Alu 28 305 -6 2016 123 133 38 chr21 21722073 21722291 -23185279 + MSTA LTR MaLR 155 428 0 301 329 107 8 chr21 21722773 21723147 -23184423 + L1M4 LINE L1 4420 4830 -1316 2353 63 0 3 chr21 21724106 21724405 -23183165 - AluY SINE Alu -13 298 1 22 70 0 0 chr21 21724541 21724584 -23182986 + AT_rich Low_complexity Low_complexity 1 43 0 215 200 0 17 chr21 21724603 21724663 -23182907 + (TATG)n Simple_repeat Simple_repeat 2 60 0 309 294 31 12 chr21 21727210 21727373 -23180197 - L1M4 LINE L1 -2098 4048 3883 408 294 57 55 chr21 21727496 21727760 -23179810 - HAL1b LINE L1 -782 960 736 550 206 61 0 chr21 21727760 21727891 -23179679 - MLT1D LTR MaLR 0 505 367 24 32 0 0 chr21 21727971 21728002 -23179568 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr21 21728662 21728708 -23178862 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr21 21728901 21728922 -23178648 + AT_rich Low_complexity Low_complexity 1 21 0 1998 158 31 19 chr21 21729232 21729592 -23177978 - THE1B LTR MaLR 0 364 1 11021 106 11 1 chr21 21729593 21731154 -23176416 - THE1B-int LTR MaLR -1 1579 2 2278 119 30 25 chr21 21731155 21731517 -23176053 - THE1B LTR MaLR 0 364 1 2023 153 137 8 chr21 21731787 21732166 -23175404 + MSTA LTR MaLR 1 428 0 1339 136 0 0 chr21 21732166 21732380 -23175190 + MSTA-int LTR MaLR 1 214 -1437 1167 73 0 48 chr21 21732393 21732580 -23174990 + AluY SINE Alu 127 305 0 655 258 79 24 chr21 21732582 21732873 -23174697 - L1M4 LINE L1 -5044 1811 1505 5683 138 19 11 chr21 21732957 21733312 -23174258 - L1PB1 LINE L1 -1 6150 5799 326 80 20 0 chr21 21733312 21733362 -23174208 + (TG)n Simple_repeat Simple_repeat 2 52 0 5683 138 19 11 chr21 21733362 21734153 -23173417 - L1PB1 LINE L1 -352 5799 4992 745 304 78 36 chr21 21734174 21734671 -23172899 - L1M4 LINE L1 -5349 1510 993 225 65 0 0 chr21 21735408 21735439 -23172131 + (ATG)n Simple_repeat Simple_repeat 3 33 0 308 306 47 29 chr21 21735720 21735890 -23171680 - L1MC5 LINE L1 -35 7926 7754 225 0 0 0 chr21 21736356 21736381 -23171189 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 35 63 0 0 chr21 21737295 21737358 -23170212 + AT_rich Low_complexity Low_complexity 1 63 0 24 67 0 0 chr21 21738411 21738456 -23169114 + AT_rich Low_complexity Low_complexity 1 45 0 2427 311 73 29 chr21 21738471 21739504 -23168066 - ERVL LTR ERVL -1857 3907 2830 1689 164 11 11 chr21 21739760 21740041 -23167529 + AluJo SINE Alu 1 281 -31 180 0 0 0 chr21 21740044 21740064 -23167506 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 485 295 16 13 chr21 21740212 21740256 -23167314 - ERVL LTR ERVL -3292 2369 2327 2159 107 0 20 chr21 21740256 21740556 -23167014 - AluSx SINE Alu -18 294 1 485 295 16 13 chr21 21740556 21740704 -23166866 - ERVL LTR ERVL -3334 2327 2196 360 0 0 0 chr21 21740722 21740762 -23166808 + (TG)n Simple_repeat Simple_repeat 2 41 0 253 302 31 54 chr21 21741515 21741644 -23165926 + L2 LINE L2 2913 3038 -234 262 269 0 43 chr21 21741877 21741970 -23165600 + (TATG)n Simple_repeat Simple_repeat 4 92 0 180 176 0 0 chr21 21741972 21742006 -23165564 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 606 322 66 50 chr21 21742213 21742772 -23164798 + L1M4 LINE L1 3833 4400 -1746 190 311 0 0 chr21 21742820 21742881 -23164689 - MIR SINE MIR -1 261 201 1725 163 31 0 chr21 21743523 21743812 -23163758 + AluSx SINE Alu 1 298 -14 338 0 24 0 chr21 21743822 21743864 -23163706 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr21 21743869 21743893 -23163677 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr21 21744176 21744207 -23163363 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr21 21744273 21744301 -23163269 + AT_rich Low_complexity Low_complexity 1 28 0 1908 151 7 0 chr21 21745537 21745836 -23161734 + AluSx SINE Alu 1 301 -11 303 350 58 12 chr21 21745997 21746254 -23161316 - Charlie7 DNA MER1_type -297 2315 2047 287 266 114 19 chr21 21746616 21746774 -23160796 - Charlie7 DNA MER1_type -2374 238 66 2264 62 0 59 chr21 21746938 21747261 -23160309 + AluY SINE Alu 1 304 -7 25 0 0 0 chr21 21747391 21747416 -23160154 + AT_rich Low_complexity Low_complexity 1 25 0 400 361 24 30 chr21 21748066 21748232 -23159338 + MER5A DNA MER1_type 1 165 -24 233 163 0 0 chr21 21749034 21749077 -23158493 - Alu SINE Alu -7 295 253 25 0 0 0 chr21 21749136 21749161 -23158409 + AT_rich Low_complexity Low_complexity 1 25 0 61 37 0 0 chr21 21749464 21749546 -23158024 + AT_rich Low_complexity Low_complexity 1 82 0 899 208 3 107 chr21 21749965 21750301 -23157269 - L1 LINE L1 -2588 3558 3258 410 184 0 0 chr21 21750307 21750383 -23157187 + L1MB1 LINE L1 6088 6163 -5 247 365 10 0 chr21 21750553 21750657 -23156913 - L2 LINE L2 -341 2931 2827 181 73 24 49 chr21 21750672 21750713 -23156857 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 34 24 0 0 chr21 21750730 21750771 -23156799 + AT_rich Low_complexity Low_complexity 1 41 0 25 99 0 0 chr21 21750797 21750878 -23156692 + AT_rich Low_complexity Low_complexity 1 81 0 4493 179 35 7 chr21 21750881 21752377 -23155193 - L1MA8 LINE L1 -439 5852 4312 4117 220 56 26 chr21 21752359 21752463 -23155107 - L1MA8 LINE L1 -2404 3742 3643 * 2325 57 0 3 chr21 21752463 21752793 -23154777 + AluY SINE Alu 1 329 0 4117 220 56 26 chr21 21752793 21753930 -23153640 - L1MA8 LINE L1 -2503 3643 2462 1968 122 4 4 chr21 21755468 21755771 -23151799 + AluSg1 SINE Alu 1 303 0 22 56 0 0 chr21 21756254 21756290 -23151280 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr21 21756698 21756734 -23150836 + AT_rich Low_complexity Low_complexity 1 36 0 1612 239 68 8 chr21 21757539 21758012 -23149558 - MLT1D LTR MaLR -3 502 2 301 247 0 13 chr21 21758049 21758126 -23149444 - L1 LINE L1 -1286 4860 4785 264 279 29 0 chr21 21758126 21758230 -23149340 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 22 0 0 0 chr21 21758477 21758499 -23149071 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr21 21758602 21758631 -23148939 + AT_rich Low_complexity Low_complexity 1 29 0 3949 218 31 18 chr21 21758803 21759391 -23148179 - L1 LINE L1 -1270 4876 4269 4248 62 2 0 chr21 21759391 21759954 -23147616 + L1PA5 LINE L1 5609 6172 0 3949 218 31 18 chr21 21759954 21760345 -23147225 - L1 LINE L1 -1877 4269 3884 2155 220 21 7 chr21 21760336 21761019 -23146551 + L1M2 LINE L1 4851 5544 -743 * 583 292 106 6 chr21 21761527 21761688 -23145882 - MER5A DNA MER1_type 0 189 13 35 103 0 0 chr21 21762741 21762867 -23144703 + AT_rich Low_complexity Low_complexity 1 126 0 1202 249 90 34 chr21 21764475 21764829 -23142741 + MLT1A2 LTR MaLR 1 374 0 307 303 84 36 chr21 21765412 21765663 -23141907 - ERVL LTR ERVL -1780 3984 3722 271 313 81 46 chr21 21765952 21766211 -23141359 - ERVL LTR ERVL -2811 2953 2686 310 241 11 0 chr21 21766217 21766304 -23141266 + L1ME LINE L1 2186 2273 -4123 1025 205 5 10 chr21 21766306 21766506 -23141064 - MER58A DNA MER1_type 0 224 26 254 280 58 9 chr21 21766593 21766818 -23140752 + L1ME LINE L1 2305 2540 -3675 516 239 13 45 chr21 21766956 21767111 -23140459 + L1ME LINE L1 4945 5094 -1121 1169 129 0 0 chr21 21767207 21767378 -23140192 + AluSp SINE Alu 132 302 -11 746 265 80 11 chr21 21767392 21767828 -23139742 + L1ME LINE L1 5189 5651 -582 1938 142 30 0 chr21 21769404 21769700 -23137870 + AluSg SINE Alu 1 305 -5 246 360 90 26 chr21 21770719 21771030 -23136540 + L3 LINE CR1 1126 1456 -121 1899 131 0 3 chr21 21772611 21772893 -23134677 - AluSx SINE Alu -25 287 7 305 319 79 52 chr21 21772980 21773209 -23134361 + MIR SINE MIR 25 259 -3 273 229 14 0 chr21 21775667 21775737 -23131833 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 425 308 8 0 chr21 21775749 21775866 -23131704 - MER93a LTR ERV1 -26 376 259 216 143 0 0 chr21 21775979 21776021 -23131549 + (GA)n Simple_repeat Simple_repeat 1 42 0 600 259 7 0 chr21 21776075 21776218 -23131352 - MER58B DNA MER1_type -1 340 197 889 184 30 30 chr21 21777080 21777218 -23130352 + L1PA16 LINE L1 5962 6102 -64 2228 85 0 19 chr21 21777218 21777525 -23130045 + AluSx SINE Alu 1 301 -11 889 184 30 30 chr21 21777525 21777587 -23129983 + L1PA16 LINE L1 6101 6162 -4 25 0 0 0 chr21 21777593 21777618 -23129952 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 21778047 21778069 -23129501 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr21 21778473 21778502 -23129068 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr21 21778802 21778842 -23128728 + AT_rich Low_complexity Low_complexity 1 40 0 222 149 64 0 chr21 21780089 21780136 -23127434 + (TTTAG)n Simple_repeat Simple_repeat 1 50 0 1881 135 4 0 chr21 21780136 21780417 -23127153 - AluJb SINE Alu -24 288 7 300 111 0 0 chr21 21780963 21781008 -23126562 + (TA)n Simple_repeat Simple_repeat 1 45 0 1825 153 11 54 chr21 21781027 21781387 -23126183 + THE1C LTR MaLR 4 349 -26 1225 69 12 0 chr21 21781387 21781560 -23126010 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1825 153 11 54 chr21 21781560 21781571 -23125999 + THE1C LTR MaLR 349 359 -16 398 344 81 21 chr21 21781627 21782049 -23125521 - L1ME LINE L1 -381 5781 5335 297 301 10 10 chr21 21782530 21782633 -23124937 - L1ME LINE L1 -389 5781 5679 232 261 0 14 chr21 21782674 21782743 -23124827 + CT-rich Low_complexity Low_complexity 2 69 0 204 235 0 0 chr21 21782938 21782989 -23124581 + T-rich Low_complexity Low_complexity 2 52 0 411 261 114 44 chr21 21783238 21783510 -23124060 - L1M4 LINE L1 -3638 2508 2218 27 29 0 0 chr21 21783660 21783694 -23123876 + AT_rich Low_complexity Low_complexity 1 34 0 285 267 25 8 chr21 21784627 21784747 -23122823 - L1ME3 LINE L1 -2 6160 6039 320 266 0 11 chr21 21784783 21784877 -23122693 - L1ME3 LINE L1 -197 5965 5873 21 71 0 0 chr21 21784920 21784962 -23122608 + AT_rich Low_complexity Low_complexity 1 42 0 1106 192 142 39 chr21 21785315 21785674 -23121896 + MSTD LTR MaLR 1 396 0 5704 258 37 49 chr21 21785677 21787361 -23120209 + MSTD-int LTR MaLR 3 1666 -69 2054 114 10 0 chr21 21787364 21787654 -23119916 + AluSp SINE Alu 1 293 -20 312 120 0 0 chr21 21787657 21787707 -23119863 + (GAA)n Simple_repeat Simple_repeat 1 50 0 976 117 12 0 chr21 21787720 21787883 -23119687 + (GAA)n Simple_repeat Simple_repeat 1 165 0 763 246 29 7 chr21 21787958 21788288 -23119282 + MSTD LTR MaLR 2 396 0 2558 48 0 0 chr21 21789186 21789496 -23118074 + AluY SINE Alu 1 310 -1 337 306 0 16 chr21 21789970 21790094 -23117476 + CT-rich Low_complexity Low_complexity 3 124 0 2630 197 52 26 chr21 21790477 21790573 -23116997 + L1MB2 LINE L1 5380 5472 -711 279 0 0 0 chr21 21790573 21790604 -23116966 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2630 197 52 26 chr21 21790604 21791121 -23116449 + L1MB2 LINE L1 5472 6009 -174 8978 170 23 9 chr21 21791161 21792004 -23115566 - L1PA12 LINE L1 -4 7602 6772 2331 81 0 13 chr21 21792004 21792314 -23115256 - AluY SINE Alu -2 309 4 8978 170 23 9 chr21 21792314 21793982 -23113588 - L1PA12 LINE L1 -834 6772 5068 2330 185 7 5 chr21 21793984 21794400 -23113170 - L1PA12 LINE L1 -7158 423 7 532 224 28 8 chr21 21794409 21794563 -23113007 + L1MB2 LINE L1 6008 6179 -4 26 0 0 0 chr21 21794565 21794591 -23112979 + AT_rich Low_complexity Low_complexity 1 26 0 291 71 0 0 chr21 21795158 21795200 -23112370 + (TC)n Simple_repeat Simple_repeat 1 42 0 27 0 0 0 chr21 21795861 21795888 -23111682 + AT_rich Low_complexity Low_complexity 1 27 0 1844 162 47 47 chr21 21796034 21796398 -23111172 + THE1B LTR MaLR 1 364 0 309 316 63 58 chr21 21796399 21796605 -23110965 + MLT1I LTR MaLR 91 297 -112 186 43 0 0 chr21 21796661 21796684 -23110886 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 62 0 0 chr21 21796684 21796732 -23110838 + LTR66 LTR ERVL 394 441 -169 1756 234 30 19 chr21 21796733 21797776 -23109794 - L1MC3 LINE L1 -933 6852 5651 1919 146 59 8 chr21 21797776 21798133 -23109437 + THE1C LTR MaLR 1 375 0 1756 234 30 19 chr21 21798133 21798222 -23109348 - L1MC3 LINE L1 -2134 5651 5565 846 271 38 24 chr21 21798225 21798517 -23109053 + MLT1D LTR MaLR 1 296 -209 210 118 0 0 chr21 21798517 21798551 -23109019 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 325 266 36 58 chr21 21798553 21798692 -23108878 - L1MCb LINE L1 -5891 154 19 343 298 98 67 chr21 21798947 21799232 -23108338 - L1ME2 LINE L1 -234 5930 5637 1609 157 69 16 chr21 21799232 21799537 -23108033 - MER4B LTR ERV1 -289 321 1 2452 44 0 7 chr21 21799895 21800193 -23107377 - AluY SINE Alu 0 311 16 388 294 41 41 chr21 21800546 21800767 -23106803 - L1ME2 LINE L1 -2163 3983 3763 26 64 0 0 chr21 21800955 21801002 -23106568 + AT_rich Low_complexity Low_complexity 1 47 0 30 45 0 0 chr21 21802088 21802132 -23105438 + AT_rich Low_complexity Low_complexity 1 44 0 227 79 26 0 chr21 21802199 21802237 -23105333 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 30 59 0 0 chr21 21804409 21804460 -23103110 + AT_rich Low_complexity Low_complexity 1 51 0 30 27 0 0 chr21 21804895 21804932 -23102638 + AT_rich Low_complexity Low_complexity 1 37 0 2393 227 96 21 chr21 21805363 21805842 -23101728 - L1MB1 LINE L1 -6 6162 5760 359 0 43 0 chr21 21805842 21805888 -23101682 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2393 227 96 21 chr21 21805888 21806177 -23101393 - L1MB1 LINE L1 -408 5760 5494 439 193 0 0 chr21 21806185 21806303 -23101267 - AluY SINE Alu 0 311 206 1162 190 0 0 chr21 21806556 21806751 -23100819 + AluJb SINE Alu 1 195 -117 24 32 0 0 chr21 21806957 21806988 -23100582 + AT_rich Low_complexity Low_complexity 1 31 0 238 322 69 0 chr21 21807466 21807553 -23100017 + L2 LINE L2 313 405 -2909 23 54 0 0 chr21 21809831 21809868 -23097702 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr21 21810242 21810268 -23097302 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr21 21812153 21812181 -23095389 + AT_rich Low_complexity Low_complexity 1 28 0 1514 240 36 36 chr21 21812905 21813580 -23093990 + L1MC/D LINE L1 5042 5726 -516 6199 158 69 2 chr21 21813925 21815073 -23092497 + Tigger3b DNA MER2_type 4 1228 -3 1627 183 0 40 chr21 21815294 21815652 -23091918 + AluJo SINE Alu 1 345 0 2122 85 0 57 chr21 21816021 21816338 -23091232 + AluY SINE Alu 1 299 -12 1390 200 35 6 chr21 21816781 21817096 -23090474 + Tigger7 DNA MER2_type 1 412 -321 572 211 23 31 chr21 21817090 21817218 -23090352 + Tigger7 DNA MER2_type 2365 2491 0 * 192 347 31 61 chr21 21817699 21817797 -23089773 + MIR SINE MIR 1 95 -167 23 54 0 0 chr21 21817915 21817952 -23089618 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr21 21818128 21818156 -23089414 + AT_rich Low_complexity Low_complexity 1 28 0 3075 238 72 36 chr21 21818980 21820256 -23087314 - L1MA5 LINE L1 -2 6298 4965 441 266 14 17 chr21 21820326 21820530 -23087040 - L1MA5 LINE L1 -2911 3235 3022 3002 156 54 25 chr21 21821414 21821761 -23085809 + MSTA-int LTR MaLR 1011 1381 -199 2026 125 0 69 chr21 21821761 21822096 -23085474 - AluSx SINE Alu 0 312 1 3002 156 54 25 chr21 21822096 21822301 -23085269 + MSTA-int LTR MaLR 1381 1579 -1 1971 131 134 33 chr21 21822302 21822691 -23084879 + MSTA LTR MaLR 1 428 0 1976 153 129 3 chr21 21823522 21823902 -23083668 - MSTA LTR MaLR 0 428 1 7038 228 75 38 chr21 21824286 21828917 -23078653 + L1MC1 LINE L1 20 4960 -1466 4734 192 60 18 chr21 21828918 21830204 -23077366 + L1MC1 LINE L1 5275 6613 0 304 284 45 0 chr21 21831498 21831586 -23075984 - MIR SINE MIR -122 140 49 2430 46 0 7 chr21 21831926 21832270 -23075300 + AluY SINE Alu 1 311 0 2503 50 0 0 chr21 21833151 21833454 -23074116 - AluY SINE Alu -8 303 1 211 338 0 26 chr21 21835279 21835356 -23072214 + L2 LINE L2 2554 2628 -686 1214 163 29 32 chr21 21835446 21835692 -23071878 + THE1A LTR MaLR 1 245 -110 4167 112 15 2 chr21 21835693 21836298 -23071272 + THE1A-int LTR MaLR 1 613 -967 9942 215 22 5 chr21 21836303 21838645 -23068925 + L1 LINE L1 2394 4776 -1370 205 339 203 16 chr21 21838864 21839115 -23068455 + L2 LINE L2 2194 2491 -823 230 321 138 43 chr21 21839166 21839515 -23068055 + L2 LINE L2 1785 2166 -1148 192 297 27 0 chr21 21839891 21839965 -23067605 + L2 LINE L2 2340 2415 -899 21 0 0 0 chr21 21840727 21840748 -23066822 + AT_rich Low_complexity Low_complexity 1 21 0 2189 191 18 21 chr21 21841272 21841707 -23065863 + MLT1C LTR MaLR 4 437 -30 2485 50 0 22 chr21 21841716 21842033 -23065537 - AluY SINE Alu -1 310 1 2049 74 11 18 chr21 21842387 21842701 -23064869 + AluSc SINE Alu 1 312 0 1988 87 43 37 chr21 21842825 21843124 -23064446 + AluSc SINE Alu 1 301 -8 22 56 0 0 chr21 21843251 21843287 -23064283 + AT_rich Low_complexity Low_complexity 1 36 0 2213 281 58 15 chr21 21843876 21845010 -23062560 - ERVL-D LTR ERVL -4347 1254 1 249 109 0 127 chr21 21845018 21845073 -23062497 - MLT2D LTR ERVL 0 414 367 1492 212 38 35 chr21 21845103 21845476 -23062094 - MLT2D LTR ERVL -40 374 1 395 184 0 0 chr21 21845880 21845956 -23061614 - L1MA3 LINE L1 0 6305 6230 2068 122 3 7 chr21 21848034 21848337 -23059233 + AluSq SINE Alu 1 302 -11 184 349 88 71 chr21 21848870 21849108 -23058462 + L2 LINE L2 2397 2638 -676 360 260 77 30 chr21 21849465 21849634 -23057936 + MLT1L LTR MaLR 423 599 -16 193 320 26 13 chr21 21850372 21850450 -23057120 + MIR SINE MIR 73 151 -111 428 302 122 12 chr21 21850476 21850648 -23056922 + MIR SINE MIR 51 241 -21 2369 37 0 0 chr21 21850893 21851203 -23056367 - AluY SINE Alu 0 320 11 23 0 0 0 chr21 21851208 21851231 -23056339 + AT_rich Low_complexity Low_complexity 1 23 0 855 221 9 74 chr21 21851447 21851532 -23056038 - MER74A LTR ERVL 0 558 469 1959 116 0 14 chr21 21851532 21851843 -23055727 + AluSg SINE Alu 1 307 0 214 39 0 0 chr21 21851817 21851866 -23055704 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 855 221 9 74 chr21 21851843 21851993 -23055577 - MER74A LTR ERVL -89 469 356 227 286 129 53 chr21 21852024 21852195 -23055375 + MIR SINE MIR 7 190 -72 213 196 0 0 chr21 21852224 21852270 -23055300 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 349 263 71 10 chr21 21852358 21852457 -23055113 + L2 LINE L2 3138 3242 -30 1602 268 8 8 chr21 21852473 21852853 -23054717 - MER74A LTR ERVL -170 388 9 458 175 37 8 chr21 21855887 21856138 -23051432 + (TA)n Simple_repeat Simple_repeat 1 258 0 1762 264 36 29 chr21 21856551 21856678 -23050892 - MER90 LTR ERV1 -15 599 474 2277 87 10 0 chr21 21856678 21856977 -23050593 + AluSp SINE Alu 1 302 -11 1762 264 36 29 chr21 21856977 21857375 -23050195 - MER90 LTR ERV1 -140 474 70 1400 242 28 82 chr21 21857437 21858106 -23049464 - L1ME1 LINE L1 -5 6579 5947 626 286 41 51 chr21 21858110 21858425 -23049145 - L1ME1 LINE L1 -1950 4614 4303 * 2518 271 40 63 chr21 21858420 21858832 -23048738 - L1ME1 LINE L1 -2564 4000 3580 1775 121 3 64 chr21 21858832 21859130 -23048440 + AluSx SINE Alu 3 282 -30 2518 271 40 63 chr21 21859130 21860155 -23047415 - L1ME1 LINE L1 -2984 3580 2597 2144 120 0 3 chr21 21860246 21860554 -23047016 - AluSx SINE Alu -5 307 1 884 251 57 78 chr21 21860582 21861338 -23046232 - L1ME1 LINE L1 -4011 2553 1830 1379 269 63 29 chr21 21861353 21862075 -23045495 - L1ME1 LINE L1 -4911 1134 791 693 306 90 6 chr21 21862244 21862567 -23045003 - L1ME1 LINE L1 -5566 479 130 22 0 0 0 chr21 21862606 21862628 -23044942 + AT_rich Low_complexity Low_complexity 1 22 0 1285 294 65 56 chr21 21862736 21863472 -23044098 - L1MEc LINE L1 -5617 779 37 428 296 35 74 chr21 21863898 21864155 -23043415 + MLT1K LTR MaLR 314 560 -28 21 0 0 0 chr21 21865355 21865376 -23042194 + AT_rich Low_complexity Low_complexity 1 21 0 2087 133 0 13 chr21 21865639 21865947 -23041623 - AluSq SINE Alu -9 304 1 225 275 14 14 chr21 21866796 21866865 -23040705 + (TATG)n Simple_repeat Simple_repeat 2 70 0 633 270 124 0 chr21 21866894 21867079 -23040491 + MIR SINE MIR 1 208 -54 2171 192 26 66 chr21 21867277 21867369 -23040201 - L1M1 LINE L1 -681 5619 5525 2042 57 0 71 chr21 21867369 21867665 -23039905 - AluY SINE Alu -34 277 3 2171 192 26 66 chr21 21867665 21868380 -23039190 - L1MA4 LINE L1 -775 5525 4843 1814 224 68 52 chr21 21868377 21869101 -23038469 + L1MA4 LINE L1 5557 6291 -9 * 182 328 92 25 chr21 21870309 21870428 -23037142 - MIR SINE MIR -27 235 109 185 0 40 0 chr21 21870469 21870494 -23037076 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 22 35 0 0 chr21 21872117 21872146 -23035424 + AT_rich Low_complexity Low_complexity 1 29 0 1760 231 25 19 chr21 21872298 21872774 -23034796 + L1MB8 LINE L1 5694 6172 -6 588 289 12 17 chr21 21872840 21873039 -23034531 + MIR SINE MIR 54 250 -12 215 216 0 59 chr21 21874116 21874167 -23033403 - MER5A DNA MER1_type 0 189 142 * 220 250 88 29 chr21 21874165 21874233 -23033337 + MER5B DNA MER1_type 106 177 -1 21 0 0 0 chr21 21874492 21874513 -23033057 + AT_rich Low_complexity Low_complexity 1 21 0 1420 183 183 16 chr21 21874653 21875020 -23032550 - MSTA LTR MaLR 0 428 1 1682 192 0 0 chr21 21876552 21876839 -23030731 - AluJb SINE Alu -4 308 22 7218 191 147 10 chr21 21876839 21878374 -23029196 - MER52A LTR ERV1 -9 1746 1 34 0 0 0 chr21 21878802 21878836 -23028734 + AT_rich Low_complexity Low_complexity 1 34 0 1933 190 6 3 chr21 21879147 21879511 -23028059 - MER47A DNA MER2_type -1 365 1 30 0 0 0 chr21 21881066 21881096 -23026474 + AT_rich Low_complexity Low_complexity 1 30 0 41 66 0 0 chr21 21882190 21882266 -23025304 + AT_rich Low_complexity Low_complexity 1 76 0 2450 70 3 0 chr21 21882335 21882637 -23024933 + AluSp SINE Alu 1 303 -10 23 54 0 0 chr21 21883460 21883497 -23024073 + AT_rich Low_complexity Low_complexity 1 37 0 267 321 132 11 chr21 21883533 21883723 -23023847 - L2 LINE L2 -265 3048 2836 525 309 28 58 chr21 21883794 21884085 -23023485 - L2 LINE L2 -2024 1290 1009 48 18 0 0 chr21 21884218 21884273 -23023297 + AT_rich Low_complexity Low_complexity 1 55 0 2431 44 7 3 chr21 21884502 21884799 -23022771 + AluY SINE Alu 1 298 -13 252 0 0 0 chr21 21884813 21884841 -23022729 + (TG)n Simple_repeat Simple_repeat 2 29 0 314 318 32 0 chr21 21884935 21885061 -23022509 + L1MC/D LINE L1 5375 5504 -2281 638 221 54 54 chr21 21885478 21885682 -23021888 - MER3 DNA MER1_type 0 209 6 1968 124 4 0 chr21 21886448 21886723 -23020847 + AluSc SINE Alu 1 276 -33 180 0 0 0 chr21 21886723 21886743 -23020827 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr21 21886945 21886968 -23020602 + AT_rich Low_complexity Low_complexity 1 23 0 2568 39 3 3 chr21 21887000 21887311 -23020259 - AluY SINE Alu 0 311 1 238 239 43 11 chr21 21888070 21888162 -23019408 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 255 240 40 0 chr21 21888207 21888282 -23019288 + L1M4 LINE L1 3510 3587 -2559 1755 165 113 61 chr21 21888300 21888337 -23019233 - MSTA LTR MaLR 0 428 394 2082 114 0 44 chr21 21888337 21888653 -23018917 - AluSg SINE Alu -8 302 1 1755 165 113 61 chr21 21888653 21889022 -23018548 - MSTA LTR MaLR -34 394 1 23 0 0 0 chr21 21889135 21889158 -23018412 + AT_rich Low_complexity Low_complexity 1 23 0 1057 229 143 27 chr21 21891521 21891764 -23015806 - MLT2B2 LTR ERVL -2 513 221 1133 170 113 23 chr21 21891764 21891884 -23015686 + AluJb SINE Alu 1 109 -193 393 29 72 14 chr21 21891884 21891953 -23015617 + A-rich Low_complexity Low_complexity 2 74 0 1133 170 113 23 chr21 21891953 21892097 -23015473 + AluJb SINE Alu 109 289 -13 1057 229 143 27 chr21 21892097 21892181 -23015389 - MLT2B2 LTR ERVL -294 221 148 269 308 11 0 chr21 21893849 21893940 -23013630 + (TATG)n Simple_repeat Simple_repeat 4 95 0 1236 281 9 16 chr21 21893947 21894267 -23013303 - MLT1A2 LTR MaLR -12 362 45 205 279 0 0 chr21 21894290 21894351 -23013219 + (TA)n Simple_repeat Simple_repeat 1 61 0 1116 138 0 0 chr21 21894417 21894577 -23012993 - AluSq SINE Alu -10 303 144 2128 118 20 0 chr21 21894623 21894929 -23012641 + AluSx SINE Alu 1 312 0 809 230 109 7 chr21 21894980 21895254 -23012316 - MER33 DNA MER1_type -22 302 1 1525 117 26 110 chr21 21896202 21896511 -23011059 - AluSx SINE Alu -21 291 9 26 30 0 0 chr21 21900509 21900542 -23007028 + AT_rich Low_complexity Low_complexity 1 33 0 323 255 82 71 chr21 21901257 21901441 -23006129 - L2 LINE L2 -15 3298 3113 420 344 79 62 chr21 21901731 21902213 -23005357 - L2 LINE L2 -605 2709 2220 2168 139 0 0 chr21 21902516 21902826 -23004744 + AluSx SINE Alu 1 310 -2 577 338 21 8 chr21 21902960 21903197 -23004373 - MIR SINE MIR -2 260 21 255 217 0 0 chr21 21903334 21903380 -23004190 + MLT1I LTR MaLR 98 143 -266 2072 244 29 4 chr21 21903388 21903843 -23003727 + MER70A LTR ERVL 1 466 -6 256 298 61 9 chr21 21903869 21903983 -23003587 + MLT1I LTR MaLR 168 287 -122 24 0 0 0 chr21 21904068 21904092 -23003478 + AT_rich Low_complexity Low_complexity 1 24 0 958 251 115 39 chr21 21904539 21904596 -23002974 + L1MC4a LINE L1 7252 7303 -505 2321 61 7 7 chr21 21904596 21904893 -23002677 + AluY SINE Alu 15 311 0 958 251 115 39 chr21 21904893 21905019 -23002551 + L1MC4a LINE L1 7303 7418 -390 1626 171 23 3 chr21 21905019 21905324 -23002246 - AluSx SINE Alu 0 312 2 958 251 115 39 chr21 21905324 21905654 -23001916 + L1MC4a LINE L1 7418 7805 -3 2323 106 0 0 chr21 21905932 21906244 -23001326 + AluSx SINE Alu 1 312 0 1456 193 75 46 chr21 21906264 21906637 -23000933 - L1PB4 LINE L1 -6 6150 5767 517 289 158 45 chr21 21906652 21906918 -23000652 - MLT1H LTR MaLR -253 296 1 221 296 19 0 chr21 21907876 21907930 -22999640 + L2 LINE L2 3229 3283 -30 25 31 0 0 chr21 21908509 21908541 -22999029 + AT_rich Low_complexity Low_complexity 1 32 0 861 166 32 0 chr21 21909574 21909731 -22997839 - THE1C LTR MaLR 0 375 214 21 0 0 0 chr21 21911010 21911031 -22996539 + AT_rich Low_complexity Low_complexity 1 21 0 1370 263 81 2 chr21 21911916 21912312 -22995258 + L1MD2 LINE L1 5930 6356 -3 21 36 0 0 chr21 21912957 21912985 -22994585 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr21 21913504 21913536 -22994034 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 21913603 21913626 -22993944 + AT_rich Low_complexity Low_complexity 1 23 0 1656 199 42 26 chr21 21913655 21914037 -22993533 - MLT1B LTR MaLR 0 390 3 22 35 0 0 chr21 21914277 21914306 -22993264 + AT_rich Low_complexity Low_complexity 1 29 0 217 239 0 0 chr21 21914390 21914436 -22993134 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 1982 144 23 0 chr21 21914759 21915058 -22992512 - AluSq SINE Alu -7 306 1 1147 223 118 57 chr21 21915141 21915617 -22991953 - MLT1D LTR MaLR 0 505 1 279 0 0 0 chr21 21917007 21917038 -22990532 + (TG)n Simple_repeat Simple_repeat 2 32 0 290 367 87 14 chr21 21917370 21917727 -22989843 - L3 LINE CR1 -2 1575 1193 452 330 32 5 chr21 21917846 21918031 -22989539 - L1ME2 LINE L1 -24 6140 5951 186 363 73 16 chr21 21918613 21918737 -22988833 + L2 LINE L2 2502 2632 -682 1564 187 7 13 chr21 21920154 21920453 -22987117 + AluJb SINE Alu 1 297 -15 1616 211 13 3 chr21 21920789 21921087 -22986483 + MLT2B2 LTR ERVL 1 301 -214 1113 150 0 66 chr21 21921097 21921323 -22986247 + L1MA9 LINE L1 6069 6279 -33 472 246 9 9 chr21 21922748 21922862 -22984708 - MLT1J2 LTR MaLR -295 155 42 2552 48 0 3 chr21 21922931 21923274 -22984296 + AluY SINE Alu 1 342 0 4054 167 23 15 chr21 21923828 21924644 -22982926 - L1MA8 LINE L1 -12 6279 5457 246 333 37 46 chr21 21924668 21924776 -22982794 - L2 LINE L2 -30 3283 3177 22 80 0 0 chr21 21924966 21925016 -22982554 + AT_rich Low_complexity Low_complexity 1 50 0 1139 224 123 9 chr21 21925016 21925481 -22982089 + L1M4 LINE L1 2477 2994 -3152 21 0 0 0 chr21 21926503 21926524 -22981046 + AT_rich Low_complexity Low_complexity 1 21 0 1878 108 4 0 chr21 21929093 21929352 -22978218 - AluY SINE Alu -11 300 41 26 0 0 0 chr21 21929614 21929640 -22977930 + AT_rich Low_complexity Low_complexity 1 26 0 198 410 95 3 chr21 21929848 21930153 -22977417 - L2 LINE L2 -588 2726 2394 949 213 42 14 chr21 21930173 21930389 -22977181 - MLT1D LTR MaLR -7 498 277 1951 178 19 11 chr21 21930394 21930753 -22976817 + THE1C LTR MaLR 14 375 0 9812 135 32 4 chr21 21930753 21932290 -22975280 + THE1C-int LTR MaLR 1 1580 0 1325 185 142 21 chr21 21932290 21932615 -22974955 + THE1B LTR MaLR 1 364 0 403 210 187 82 chr21 21932628 21932885 -22974685 - MLT1D LTR MaLR -335 291 8 1277 246 91 63 chr21 21933139 21933746 -22973824 - MLT1E2 LTR MaLR 0 626 1 25 0 0 0 chr21 21934330 21934355 -22973215 + AT_rich Low_complexity Low_complexity 1 25 0 1951 161 3 0 chr21 21934839 21935149 -22972421 + AluSx SINE Alu 1 311 -1 296 211 0 0 chr21 21937152 21937204 -22970366 - LTR16B LTR ERVL 0 464 413 1689 180 3 0 chr21 21937217 21937500 -22970070 + AluSx SINE Alu 5 288 -24 464 374 47 12 chr21 21937642 21937899 -22969671 - LTR16B LTR ERVL -196 268 3 2357 199 19 27 chr21 21937996 21938520 -22969050 + MLT2B1 LTR ERVL 1 520 0 31 0 0 0 chr21 21938809 21938840 -22968730 + AT_rich Low_complexity Low_complexity 1 31 0 219 323 18 0 chr21 21939241 21939309 -22968261 + MIR SINE MIR 20 89 -119 26 93 0 0 chr21 21939355 21939430 -22968140 + AT_rich Low_complexity Low_complexity 1 75 0 290 348 67 57 chr21 21939613 21940018 -22967552 - MLT1K LTR MaLR -32 556 148 22 0 0 0 chr21 21940984 21941006 -22966564 + AT_rich Low_complexity Low_complexity 1 22 0 1383 208 68 14 chr21 21942175 21942290 -22965280 + AluJb SINE Alu 1 108 -194 975 9 0 0 chr21 21942290 21942402 -22965168 + (TAAAA)n Simple_repeat Simple_repeat 5 116 0 1383 208 68 14 chr21 21942402 21942565 -22965005 + AluJb SINE Alu 108 294 -8 2391 86 0 16 chr21 21942871 21943186 -22964384 + AluY SINE Alu 1 310 -1 256 293 65 41 chr21 21943186 21943309 -22964261 - MIR SINE MIR -125 137 12 21 100 0 0 chr21 21944048 21944118 -22963452 + AT_rich Low_complexity Low_complexity 1 70 0 1549 255 12 62 chr21 21944354 21944836 -22962734 + MLT2B1 LTR ERVL 1 458 -62 393 248 23 0 chr21 21944856 21944989 -22962581 + (TA)n Simple_repeat Simple_repeat 1 136 0 3816 154 77 49 chr21 21945503 21946306 -22961264 - LTR1B LTR ERV1 0 826 1 461 325 88 30 chr21 21946327 21946632 -22960938 - L2 LINE L2 0 3313 2991 295 302 10 0 chr21 21946889 21946985 -22960585 + MLT1J1 LTR MaLR 350 446 0 478 354 83 30 chr21 21946988 21947361 -22960209 - L2 LINE L2 -528 2786 2394 817 271 153 54 chr21 21948709 21949193 -22958377 + MLT1F1 LTR MaLR 15 565 -2 180 250 0 0 chr21 21949272 21949336 -22958234 + (TA)n Simple_repeat Simple_repeat 1 64 0 854 200 6 12 chr21 21950157 21950322 -22957248 - MLT1A1 LTR MaLR -199 166 3 21 71 0 0 chr21 21950803 21950845 -22956725 + AT_rich Low_complexity Low_complexity 1 42 0 2259 92 3 0 chr21 21953147 21953461 -22954109 + AluSc SINE Alu 17 331 0 206 274 0 0 chr21 21954210 21954261 -22953309 + (CA)n Simple_repeat Simple_repeat 2 52 0 191 353 88 15 chr21 21954447 21954583 -22952987 - MIR SINE MIR -39 223 78 2312 97 3 0 chr21 21954694 21955002 -22952568 - AluSg SINE Alu -1 309 1 1542 227 17 37 chr21 21955842 21956194 -22951376 - MLT1A1 LTR MaLR -2 363 19 465 225 225 17 chr21 21956294 21956467 -22951103 - LTR16A1 LTR ERVL -4 453 245 276 228 11 65 chr21 21956502 21956594 -22950976 - LTR16A1 LTR ERVL -293 164 78 759 308 80 49 chr21 21957269 21957655 -22949915 + L2 LINE L2 2412 2809 -505 263 319 0 11 chr21 21957738 21957829 -22949741 + MIR SINE MIR 173 262 0 218 186 0 0 chr21 21957984 21958027 -22949543 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 617 68 11 0 chr21 21959861 21959949 -22947621 + L1PA4 LINE L1 6062 6150 -5 26 0 0 0 chr21 21960224 21960250 -22947320 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr21 21960513 21960545 -22947025 + AT_rich Low_complexity Low_complexity 1 32 0 268 202 146 75 chr21 21960910 21961123 -22946447 - Charlie1a DNA MER1_type -47 1408 1181 787 161 143 0 chr21 21961134 21961302 -22946268 - AluSg/x SINE Alu 0 312 121 1911 214 100 6 chr21 21961330 21961878 -22945692 - Charlie1a DNA MER1_type -282 1173 574 487 90 0 0 chr21 21961908 21961975 -22945595 + AluJ/FRAM SINE Alu 233 299 -13 264 305 53 0 chr21 21961981 21962076 -22945494 + L2 LINE L2 2132 2231 -1083 2050 117 0 0 chr21 21962076 21962381 -22945189 - AluSq SINE Alu 0 305 1 1431 268 85 28 chr21 21962410 21962952 -22944618 - Charlie1a DNA MER1_type -882 573 1 192 290 14 29 chr21 21963314 21963383 -22944187 - L2 LINE L2 -5 3267 3200 203 388 34 48 chr21 21964771 21964918 -22942652 - L2 LINE L2 0 3272 3128 322 191 25 49 chr21 21965106 21965268 -22942302 + (TTATA)n Simple_repeat Simple_repeat 4 161 0 2328 77 3 0 chr21 21965602 21965902 -22941668 + AluY SINE Alu 1 301 -10 1965 144 0 0 chr21 21966898 21967197 -22940373 - AluSg SINE Alu -11 299 1 548 270 132 24 chr21 21967517 21967813 -22939757 + L3 LINE CR1 575 902 -675 25 0 0 0 chr21 21968327 21968352 -22939218 + AT_rich Low_complexity Low_complexity 1 25 0 218 339 119 0 chr21 21968775 21968884 -22938686 - L2 LINE L2 -3 3310 3189 238 254 45 0 chr21 21969216 21969283 -22938287 - MIR SINE MIR -17 245 176 186 316 26 40 chr21 21969754 21969830 -22937740 - L2 LINE L2 -191 3081 3007 23 33 0 0 chr21 21970127 21970157 -22937413 + AT_rich Low_complexity Low_complexity 1 30 0 676 270 119 58 chr21 21971623 21972301 -22935269 - HAL1 LINE L1 -413 2094 1375 314 308 90 30 chr21 21972345 21972525 -22935045 - HAL1 LINE L1 -1148 1359 1160 2124 125 6 6 chr21 21972525 21972836 -22934734 - AluSx SINE Alu -1 311 1 314 308 90 30 chr21 21972836 21972889 -22934681 - HAL1 LINE L1 -1347 1160 1112 261 0 0 0 chr21 21972893 21972922 -22934648 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 2327 45 0 0 chr21 21972922 21973190 -22934380 - AluY SINE Alu -20 291 24 266 135 79 11 chr21 21973239 21973328 -22934242 + (TA)n Simple_repeat Simple_repeat 1 95 0 679 229 23 0 chr21 21973360 21973491 -22934079 + MER52A LTR ERV1 667 800 -955 293 232 146 0 chr21 21973556 21973638 -22933932 + MER52A LTR ERV1 801 894 -861 629 235 51 30 chr21 21973640 21973853 -22933717 + MER61D LTR ERV1 334 1297 -12 612 318 79 99 chr21 21973979 21974428 -22933142 - HAL1 LINE L1 -1422 1085 661 2239 90 7 3 chr21 21974428 21974727 -22932843 + AluSc SINE Alu 1 300 -9 612 318 79 99 chr21 21974727 21975152 -22932418 - HAL1 LINE L1 -1846 661 229 418 173 40 0 chr21 21975430 21975505 -22932065 - MER2 DNA MER2_type 0 345 268 2135 116 3 7 chr21 21975516 21975817 -22931753 + AluSc SINE Alu 3 302 -7 2034 128 3 3 chr21 21976173 21976471 -22931099 - AluSx SINE Alu -14 298 1 2139 141 37 3 chr21 21976629 21976977 -22930593 - THE1B LTR MaLR 0 364 5 9497 138 44 2 chr21 21976981 21978497 -22929073 - THE1B-int LTR MaLR 0 1580 1 2053 164 28 0 chr21 21978497 21978851 -22928719 - THE1B LTR MaLR 0 364 1 2068 116 0 0 chr21 21979024 21979300 -22928270 + AluY SINE Alu 22 297 -14 858 222 0 0 chr21 21980822 21980989 -22926581 - FRAM SINE Alu 0 40 1 1590 114 0 9 chr21 21981362 21981581 -22925989 + AluSg/x SINE Alu 88 304 -6 2364 89 0 3 chr21 21981728 21982030 -22925540 + AluSg1 SINE Alu 1 301 -8 1576 214 0 10 chr21 21982396 21982709 -22924861 + AluJo SINE Alu 3 312 0 294 275 67 33 chr21 21982862 21983008 -22924562 - LTR16B LTR ERVL -4 448 319 303 266 62 18 chr21 21983311 21983424 -22924146 - ERVL LTR ERVL -71 4925 4808 579 281 72 33 chr21 21983591 21983954 -22923616 - ERVL LTR ERVL -618 5146 4770 329 288 68 25 chr21 21984046 21984164 -22923406 - LTR52 LTR ERVL -298 123 1 21 0 0 0 chr21 21984305 21984326 -22923244 + AT_rich Low_complexity Low_complexity 1 21 0 1867 162 0 0 chr21 21984580 21984870 -22922700 - AluSx SINE Alu -22 290 1 1939 173 6 9 chr21 21986024 21986365 -22921205 + MER2 DNA MER2_type 4 343 -1 207 0 0 0 chr21 21986376 21986399 -22921171 + (T)n Simple_repeat Simple_repeat 1 23 0 2168 110 6 19 chr21 21987184 21987501 -22920069 - AluSq SINE Alu 0 313 1 28 61 0 0 chr21 21987634 21987683 -22919887 + AT_rich Low_complexity Low_complexity 1 49 0 36 70 0 0 chr21 21987706 21987777 -22919793 + AT_rich Low_complexity Low_complexity 1 71 0 2129 20 4 0 chr21 21987778 21988024 -22919546 - L1PA3 LINE L1 -3 6152 5906 912 276 57 49 chr21 21988024 21988397 -22919173 - Charlie2 DNA MER1_type -268 2594 2211 2058 114 30 0 chr21 21988397 21988696 -22918874 + AluSp SINE Alu 1 308 -5 912 276 57 49 chr21 21988696 21989038 -22918532 - Charlie2 DNA MER1_type -651 2211 1873 2416 68 0 43 chr21 21989097 21989422 -22918148 + AluY SINE Alu 1 311 0 280 216 45 11 chr21 21989596 21989684 -22917886 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 4759 24 0 0 chr21 21990065 21990613 -22916957 - L1PA4 LINE L1 -91 6064 5517 611 81 0 0 chr21 21990613 21990700 -22916870 + L1PA2 LINE L1 6064 6150 -5 230 321 22 80 chr21 21991003 21991140 -22916430 + MIR3 SINE MIR 15 143 -65 384 151 0 0 chr21 21991298 21991351 -22916219 - Charlie5 DNA MER1_type -2559 53 1 886 244 29 0 chr21 21991360 21991598 -22915972 - L1ME LINE L1 -394 5776 5532 3061 181 22 25 chr21 21991599 21992284 -22915286 + L1MC1 LINE L1 5651 6333 0 188 368 0 13 chr21 21992915 21992991 -22914579 - L2 LINE L2 -14 3299 3225 207 0 0 0 chr21 21993778 21993801 -22913769 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 957 35 0 0 chr21 21993801 21993915 -22913655 - L1PA4 LINE L1 -11 6144 6031 205 156 0 0 chr21 21993990 21994022 -22913548 + CT-rich Low_complexity Low_complexity 2 33 0 198 0 0 0 chr21 21994416 21994438 -22913132 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr21 21995297 21995318 -22912252 + AT_rich Low_complexity Low_complexity 1 21 0 2459 58 0 3 chr21 21995322 21995634 -22911936 + L1PA5 LINE L1 5839 6149 -5 22 35 0 0 chr21 21997474 21997503 -22910067 + AT_rich Low_complexity Low_complexity 1 29 0 2108 132 97 30 chr21 21997800 21998201 -22909369 + MSTA LTR MaLR 1 428 0 288 0 0 0 chr21 21998329 21998361 -22909209 + (CA)n Simple_repeat Simple_repeat 2 33 0 1759 176 0 19 chr21 21998688 21998995 -22908575 + AluJo SINE Alu 12 312 0 2302 119 0 0 chr21 21999018 21999330 -22908240 + AluSx SINE Alu 1 312 0 33 66 0 0 chr21 21999363 21999424 -22908146 + AT_rich Low_complexity Low_complexity 1 61 0 285 225 22 0 chr21 21999852 21999941 -22907629 + (TA)n Simple_repeat Simple_repeat 1 91 0 302 240 74 25 chr21 22000022 22000143 -22907427 + MLT1H LTR MaLR 49 175 -374 2420 60 0 7 chr21 22000150 22000449 -22907121 + AluY SINE Alu 1 297 -14 210 122 82 0 chr21 22000720 22000769 -22906801 + (TTAAA)n Simple_repeat Simple_repeat 2 54 0 32 43 0 0 chr21 22000812 22000858 -22906712 + AT_rich Low_complexity Low_complexity 1 46 0 309 177 48 32 chr21 22000858 22000982 -22906588 + (TTATA)n Simple_repeat Simple_repeat 4 129 0 188 333 39 20 chr21 22002301 22002403 -22905167 - L2 LINE L2 0 3313 3210 2014 146 7 0 chr21 22002448 22002757 -22904813 - AluY SINE Alu 0 311 1 24 32 0 0 chr21 22002989 22003020 -22904550 + AT_rich Low_complexity Low_complexity 1 31 0 2201 103 0 0 chr21 22003183 22003474 -22904096 + AluSc SINE Alu 1 291 -18 602 314 20 43 chr21 22004264 22004425 -22903145 + MIR SINE MIR 2 156 -106 1768 194 71 49 chr21 22004425 22004934 -22902636 - MLT2B1 LTR ERVL 0 520 1 602 314 20 43 chr21 22004934 22005027 -22902543 + MIR SINE MIR 156 250 -12 489 345 162 21 chr21 22005390 22006092 -22901478 + L2 LINE L2 2043 2843 -471 2239 106 3 0 chr21 22006693 22006985 -22900585 + AluSg SINE Alu 3 295 -15 897 174 107 115 chr21 22007081 22007411 -22900159 + MLT1A2 LTR MaLR 17 535 -32 1088 59 0 0 chr21 22007425 22007561 -22900009 - AluY SINE Alu 0 311 176 201 341 44 11 chr21 22007636 22007727 -22899843 - L3 LINE CR1 -8 1569 1476 251 260 81 0 chr21 22007850 22007973 -22899597 + L1ME4a LINE L1 5957 6089 -32 789 104 130 0 chr21 22009457 22009572 -22897998 + THE1B LTR MaLR 1 130 -234 1786 141 111 21 chr21 22009577 22009911 -22897659 + THE1B LTR MaLR 1 364 0 376 164 0 0 chr21 22010044 22010111 -22897459 - MIR SINE MIR -12 250 184 2255 95 3 0 chr21 22010273 22010569 -22897001 + AluY SINE Alu 1 297 -14 26 74 0 0 chr21 22011246 22011300 -22896270 + AT_rich Low_complexity Low_complexity 1 54 0 1761 166 0 3 chr21 22012017 22012331 -22895239 - AluJb SINE Alu 0 313 1 1368 141 0 5 chr21 22012788 22013024 -22894546 + AluJb SINE Alu 87 321 0 365 290 51 14 chr21 22013434 22013572 -22893998 - Charlie4a DNA MER1_type -10 498 356 2377 195 44 8 chr21 22013574 22014123 -22893447 - MER44D DNA MER2_type -2 603 98 2522 50 3 0 chr21 22014127 22014425 -22893145 - AluY SINE Alu -12 299 1 1982 144 0 7 chr21 22014432 22014731 -22892839 - AluSx SINE Alu -15 297 1 252 211 0 0 chr21 22014823 22014894 -22892676 + (TA)n Simple_repeat Simple_repeat 2 72 0 368 146 13 13 chr21 22014926 22015001 -22892569 - AluJ/FLAM SINE Alu -240 62 1 351 258 11 34 chr21 22015007 22015096 -22892474 - MER44D DNA MER2_type -618 87 1 2347 162 14 25 chr21 22015099 22015537 -22892033 + Tigger2a DNA MER2_type 2 434 0 481 278 21 0 chr21 22015549 22015693 -22891877 - Charlie4a DNA MER1_type -192 316 170 1922 156 7 0 chr21 22015710 22015998 -22891572 + AluSq SINE Alu 5 294 -19 212 250 0 0 chr21 22015998 22016038 -22891532 + polypurine Low_complexity Low_complexity 2 41 0 1252 71 0 16 chr21 22016038 22016221 -22891349 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 834 210 14 11 chr21 22016221 22016533 -22891037 + GA-rich Low_complexity Low_complexity 1 312 0 364 176 98 20 chr21 22016534 22016636 -22890934 - Charlie4a DNA MER1_type -391 117 8 2116 94 0 14 chr21 22018190 22018520 -22889050 + AluSp SINE Alu 1 326 0 30 27 0 0 chr21 22018838 22018875 -22888695 + AT_rich Low_complexity Low_complexity 1 37 0 520 166 43 50 chr21 22019189 22019328 -22888242 - L1 LINE L1 -1396 4750 4613 3340 225 132 41 chr21 22019703 22020903 -22886667 - L1 LINE L1 -857 5289 3981 561 325 21 32 chr21 22021048 22021329 -22886241 - L2 LINE L2 -249 3064 2787 225 298 46 69 chr21 22021628 22021722 -22885848 + MER67A LTR ERV1 376 468 -75 1443 229 49 6 chr21 22021722 22022072 -22885498 + MLT1A1 LTR MaLR 1 365 0 225 298 46 69 chr21 22022072 22022108 -22885462 + MER67A LTR ERV1 468 503 -40 267 369 12 0 chr21 22022121 22022205 -22885365 - L2 LINE L2 -519 2795 2711 27 0 0 0 chr21 22022983 22023010 -22884560 + AT_rich Low_complexity Low_complexity 1 27 0 538 309 45 27 chr21 22023162 22023385 -22884185 - MIR SINE MIR -11 251 25 279 0 0 0 chr21 22023521 22023552 -22884018 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 313 141 10 chr21 22023671 22023863 -22883707 + MIR SINE MIR 32 248 -14 194 159 0 68 chr21 22023837 22023881 -22883689 + L2 LINE L2 3268 3308 -5 * 2609 115 0 0 chr21 22024850 22025214 -22882356 + THE1B LTR MaLR 1 364 0 1259 244 59 24 chr21 22025324 22025746 -22881824 + L1MC4a LINE L1 5445 5881 -1927 27 65 0 26 chr21 22025832 22025867 -22881703 + AT_rich Low_complexity Low_complexity 1 35 -40 1230 141 15 0 chr21 22025867 22026073 -22881497 - L1MA1 LINE L1 -5 6297 6089 27 65 0 26 chr21 22026073 22026114 -22881456 + AT_rich Low_complexity Low_complexity 35 75 0 1580 79 9 0 chr21 22026114 22026330 -22881240 - L1PA6 LINE L1 0 6154 5937 2240 84 0 11 chr21 22027908 22028246 -22879324 - AluY SINE Alu 0 335 1 1904 137 14 0 chr21 22028800 22029124 -22878446 + AluSq SINE Alu 5 332 0 2148 110 3 31 chr21 22029146 22029464 -22878106 - AluSc SINE Alu 0 309 1 316 253 25 0 chr21 22031882 22031961 -22875609 + MIR3 SINE MIR 105 185 -23 1790 156 56 19 chr21 22032132 22032453 -22875117 + MER1B DNA MER1_type 1 333 -4 2450 142 3 0 chr21 22032487 22032860 -22874710 - THE1C LTR MaLR -1 374 1 1639 261 42 70 chr21 22033234 22033874 -22873696 - MLT1E2 LTR MaLR -2 624 1 339 312 42 49 chr21 22034172 22034559 -22873011 + L1ME LINE L1 5341 5726 -436 2123 118 10 13 chr21 22034559 22034872 -22872698 + AluSq SINE Alu 1 312 -1 339 312 42 49 chr21 22034872 22034914 -22872656 + L1ME LINE L1 5726 5767 -395 237 132 0 0 chr21 22034929 22034967 -22872603 + (TA)n Simple_repeat Simple_repeat 1 38 0 2368 71 0 3 chr21 22034967 22035263 -22872307 - AluY SINE Alu -16 295 1 501 223 57 5 chr21 22035303 22035496 -22872074 - Charlie1 DNA MER1_type -3 2758 2556 732 196 71 41 chr21 22035527 22035955 -22871615 - Charlie1 DNA MER1_type -260 2501 1963 461 283 188 21 chr21 22036001 22036381 -22871189 + L2 LINE L2 2607 3056 -257 214 198 42 135 chr21 22036584 22036680 -22870890 + L2 LINE L2 3224 3310 -3 327 49 0 0 chr21 22036785 22036826 -22870744 + (TG)n Simple_repeat Simple_repeat 2 42 0 301 301 158 0 chr21 22037195 22037328 -22870242 + L2 LINE L2 1244 1397 -1917 710 191 0 0 chr21 22037446 22037561 -22870009 + FLAM_C SINE Alu 4 118 -15 996 141 20 17 chr21 22037566 22037912 -22869658 + GA-rich Low_complexity Low_complexity 1 347 0 4795 123 242 94 chr21 22037999 22039478 -22868092 + pTR5 LTR ERV1 741 2438 0 2451 62 3 3 chr21 22039880 22040187 -22867383 - AluY SINE Alu -4 307 1 1239 189 12 44 chr21 22041436 22041484 -22866086 + AluJb SINE Alu 72 120 -192 2304 114 0 0 chr21 22041484 22041790 -22865780 - AluSx SINE Alu -6 306 1 1239 189 12 44 chr21 22041790 22041990 -22865580 + AluJb SINE Alu 120 312 0 291 140 0 0 chr21 22042517 22042567 -22865003 + (GA)n Simple_repeat Simple_repeat 1 50 0 1516 231 32 27 chr21 22042986 22043358 -22864212 - MLT1A2 LTR MaLR 0 374 1 24 0 0 0 chr21 22044314 22044338 -22863232 + AT_rich Low_complexity Low_complexity 1 24 0 2272 68 4 0 chr21 22045055 22045381 -22862189 + AluY SINE Alu 1 327 0 344 132 11 33 chr21 22045922 22046013 -22861557 + (TA)n Simple_repeat Simple_repeat 1 89 0 277 296 19 28 chr21 22046014 22046122 -22861448 + GA-rich Low_complexity Low_complexity 1 107 0 432 180 10 10 chr21 22048122 22048222 -22859348 - L1M LINE L1 -760 5414 5315 * 2966 210 74 18 chr21 22048208 22049056 -22858514 - L1MB7 LINE L1 -31 6153 5258 256 230 88 0 chr21 22049071 22049186 -22858384 - L1MB7 LINE L1 -2202 3944 3820 1847 142 3 70 chr21 22049574 22049904 -22857666 + AluSx SINE Alu 1 308 -4 6963 213 55 57 chr21 22050409 22050884 -22856686 + L1MC3 LINE L1 5053 5528 -2257 2361 75 3 7 chr21 22050884 22051192 -22856378 + AluY SINE Alu 1 307 -4 6963 213 55 57 chr21 22051192 22052820 -22854750 + L1MC3 LINE L1 5528 7145 -640 2015 55 138 11 chr21 22052820 22053095 -22854475 - AluY SINE Alu -1 310 1 6963 213 55 57 chr21 22053095 22053513 -22854057 + L1MC3 LINE L1 7145 7562 -223 180 0 0 0 chr21 22054191 22054211 -22853359 + (TG)n Simple_repeat Simple_repeat 1 20 0 223 208 21 0 chr21 22054815 22054863 -22852707 - MIR3 SINE MIR -12 196 148 2165 122 13 0 chr21 22055198 22055501 -22852069 - AluSg SINE Alu 0 310 4 23 33 0 0 chr21 22055636 22055666 -22851904 + AT_rich Low_complexity Low_complexity 1 30 0 522 250 45 0 chr21 22055990 22056146 -22851424 - MLT1A1 LTR MaLR 0 365 203 1386 226 41 3 chr21 22056147 22056487 -22851083 + L1MC1 LINE L1 5979 6331 -2 919 256 166 52 chr21 22056701 22057236 -22850334 - MLT1E2 LTR MaLR -30 596 1 1164 106 3 6 chr21 22057258 22057558 -22850012 + THE1B LTR MaLR 1 364 0 300 253 44 22 chr21 22058668 22058759 -22848811 + L1MC4 LINE L1 6611 6703 -1339 234 146 18 18 chr21 22058759 22058785 -22848785 + (TA)n Simple_repeat Simple_repeat 2 27 -29 2266 94 0 3 chr21 22058785 22059072 -22848498 + AluSg SINE Alu 1 286 -24 234 146 18 18 chr21 22059072 22059100 -22848470 + (TA)n Simple_repeat Simple_repeat 26 56 0 183 232 0 0 chr21 22059286 22059342 -22848228 + (TATG)n Simple_repeat Simple_repeat 4 59 0 25 65 0 0 chr21 22059617 22059663 -22847907 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr21 22060353 22060383 -22847187 + AT_rich Low_complexity Low_complexity 1 30 0 187 333 49 80 chr21 22060770 22060932 -22846638 + L2 LINE L2 3116 3272 0 1877 158 0 3 chr21 22061005 22061290 -22846280 + AluSg SINE Alu 1 284 -26 207 0 0 0 chr21 22061305 22061328 -22846242 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2800 152 10 28 chr21 22061533 22062039 -22845531 + LOR1a LTR ERV1 1 497 0 453 288 111 65 chr21 22063239 22063590 -22843980 - MER93a LTR ERV1 -1 401 35 3529 122 52 117 chr21 22064020 22064859 -22842711 - LTR1 LTR ERV1 0 785 1 1975 105 36 4 chr21 22064957 22065233 -22842337 + AluSq SINE Alu 1 285 -28 1330 238 78 100 chr21 22065684 22066641 -22840929 + LTR1B LTR ERV1 1 1020 0 2322 97 3 0 chr21 22067031 22067331 -22840239 + AluSq SINE Alu 1 301 -12 1255 293 56 94 chr21 22067418 22068160 -22839410 - L3 LINE CR1 -27 1550 846 2403 77 0 26 chr21 22068160 22068473 -22839097 - AluY SINE Alu -6 305 1 1255 293 56 94 chr21 22068473 22068608 -22838962 - L3 LINE CR1 -731 846 707 258 262 57 74 chr21 22070409 22070531 -22837039 - MIR3 SINE MIR 0 208 89 2292 91 3 3 chr21 22070565 22070861 -22836709 - AluY SINE Alu -15 296 1 2752 153 33 2 chr21 22070945 22071427 -22836143 - LOR1a LTR ERV1 0 497 1 1083 260 117 72 chr21 22071510 22072236 -22835334 + LTR41 LTR ERVL 5 763 -10 298 333 83 46 chr21 22072248 22072599 -22834971 + L2 LINE L2 2949 3312 -1 360 122 68 14 chr21 22072733 22072807 -22834763 + MADE1 DNA Mariner 3 80 0 285 128 0 0 chr21 22074255 22074302 -22833268 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1104 239 69 39 chr21 22074309 22074643 -22832927 - MLT1A2 LTR MaLR -30 344 1 214 145 58 14 chr21 22075141 22075210 -22832360 + (TA)n Simple_repeat Simple_repeat 2 73 0 459 207 43 9 chr21 22075618 22075734 -22831836 + MER65B LTR ERV1 3 122 -409 1390 193 128 58 chr21 22075735 22076135 -22831435 - MSTA LTR MaLR 0 428 1 6441 173 18 20 chr21 22076135 22077285 -22830285 - MSTA-int LTR MaLR 0 1580 514 2152 144 0 0 chr21 22077285 22077591 -22829979 - AluSc SINE Alu -3 306 1 6441 173 18 20 chr21 22077591 22078105 -22829465 - MSTA-int LTR MaLR -1066 514 1 1806 179 122 10 chr21 22078105 22078490 -22829080 - MSTA LTR MaLR 0 428 1 678 157 27 14 chr21 22078490 22078743 -22828827 + MER65A LTR ERV1 138 445 0 2705 223 68 38 chr21 22078773 22079109 -22828461 - L1MD2 LINE L1 -208 6411 6086 1844 160 45 31 chr21 22079109 22079466 -22828104 + THE1B LTR MaLR 1 362 -2 2705 223 68 38 chr21 22079466 22079872 -22827698 - L1MD2 LINE L1 -533 6086 5639 2209 98 0 13 chr21 22079872 22080179 -22827391 - AluY SINE Alu -6 305 3 2705 223 68 38 chr21 22080179 22080386 -22827184 - L1MD2 LINE L1 -980 5639 5440 2449 247 103 42 chr21 22080540 22081878 -22825692 - L1MD2 LINE L1 -5117 1292 2 225 145 48 0 chr21 22082008 22082070 -22825500 + (TTA)n Simple_repeat Simple_repeat 3 67 0 1878 167 0 0 chr21 22082140 22082449 -22825121 + AluSx SINE Alu 1 309 0 27 62 0 0 chr21 22082640 22082688 -22824882 + AT_rich Low_complexity Low_complexity 1 48 0 346 335 19 19 chr21 22084682 22084840 -22822730 - L2 LINE L2 -1299 2015 1858 264 100 0 0 chr21 22085022 22085062 -22822508 + (GA)n Simple_repeat Simple_repeat 2 41 0 198 356 113 53 chr21 22085062 22085531 -22822039 - L2 LINE L2 -1665 1649 1153 434 283 53 0 chr21 22085767 22085919 -22821651 - Zaphod DNA AcHobo 0 4031 3872 588 374 79 8 chr21 22085928 22086297 -22821273 - MER115 DNA AcHobo -199 494 100 222 91 0 0 chr21 22086564 22086597 -22820973 + (TA)n Simple_repeat Simple_repeat 2 34 0 603 13 0 0 chr21 22087027 22087102 -22820468 + L1PA3 LINE L1 6078 6152 -3 222 389 18 18 chr21 22087862 22087975 -22819595 - L2 LINE L2 0 3272 3160 4956 81 1 38 chr21 22087996 22088710 -22818860 + LTR12 LTR ERV1 1 688 0 946 185 71 40 chr21 22088711 22089008 -22818562 + MER33 DNA MER1_type 14 319 -5 2166 96 7 10 chr21 22089296 22089588 -22817982 + AluSq SINE Alu 13 303 -10 279 0 0 0 chr21 22089592 22089623 -22817947 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 441 0 0 0 chr21 22089622 22089671 -22817899 + (TA)n Simple_repeat Simple_repeat 1 49 0 372 355 61 25 chr21 22089689 22089886 -22817684 - L2 LINE L2 -458 2856 2653 676 264 42 0 chr21 22089968 22090184 -22817386 - MER74A LTR ERVL -158 400 176 184 329 37 0 chr21 22090308 22090390 -22817180 - L2 LINE L2 -993 2321 2237 416 193 56 6 chr21 22090425 22090967 -22816603 + (TA)n Simple_repeat Simple_repeat 1 569 0 31 26 0 0 chr21 22091051 22091089 -22816481 + AT_rich Low_complexity Low_complexity 1 38 0 368 234 7 48 chr21 22091290 22091435 -22816135 + MER20B DNA MER1_type 188 326 -457 704 183 0 0 chr21 22091467 22091582 -22815988 + FLAM_C SINE Alu 16 130 -13 420 286 38 24 chr21 22091617 22091827 -22815743 + MER20B DNA MER1_type 364 576 -207 315 0 0 0 chr21 22091827 22091862 -22815708 + (TG)n Simple_repeat Simple_repeat 2 36 0 1699 117 0 8 chr21 22091863 22092103 -22815467 - AluSc SINE Alu -26 283 46 507 219 50 0 chr21 22092365 22092484 -22815086 - MER74A LTR ERVL 0 558 434 873 190 6 0 chr21 22092484 22092647 -22814923 + MSTB1 LTR MaLR 263 426 -6 2001 116 18 0 chr21 22092647 22092959 -22814611 + AluY SINE Alu 1 317 0 346 341 76 85 chr21 22093017 22093833 -22813737 - L2 LINE L2 -1231 2083 1275 2270 152 21 21 chr21 22094717 22095145 -22812425 - Tigger2a DNA MER2_type -6 428 1 289 385 69 9 chr21 22095177 22095408 -22812162 + MIR SINE MIR 5 249 -13 2229 103 0 7 chr21 22095540 22095841 -22811729 + AluY SINE Alu 1 299 -12 396 0 0 0 chr21 22095864 22095908 -22811662 + (CA)n Simple_repeat Simple_repeat 2 45 0 213 39 0 0 chr21 22095907 22095933 -22811637 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 276 102 0 0 chr21 22096372 22096421 -22811149 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1242 242 35 32 chr21 22096461 22096800 -22810770 + MLT1A2 LTR MaLR 1 340 -34 227 283 0 0 chr21 22097889 22097942 -22809628 + L1P4 LINE L1 5535 5587 -578 182 386 45 11 chr21 22098732 22098820 -22808750 - MIR SINE MIR -91 117 27 659 139 9 0 chr21 22098851 22098966 -22808604 + CT-rich Low_complexity Low_complexity 1 116 0 2139 124 0 0 chr21 22099144 22099435 -22808135 + AluSc SINE Alu 1 291 -18 2292 112 0 0 chr21 22099470 22099766 -22807804 + AluSx SINE Alu 8 303 -9 1529 196 81 54 chr21 22100793 22101238 -22806332 + MER31B LTR ERV1 1 457 -9 21 0 0 0 chr21 22101873 22101894 -22805676 + AT_rich Low_complexity Low_complexity 1 21 0 1577 200 77 55 chr21 22102386 22102841 -22804729 + MER31B LTR ERV1 2 466 0 1980 146 7 3 chr21 22102959 22103268 -22804302 - AluSg SINE Alu 0 310 1 263 295 115 0 chr21 22103656 22103778 -22803792 + MLT1I LTR MaLR 72 207 -202 230 265 59 20 chr21 22103954 22104056 -22803514 + MER34 LTR ERV1 135 240 -302 538 224 36 36 chr21 22104057 22104253 -22803317 + MER39 LTR ERV1 510 705 -2 258 182 45 0 chr21 22104344 22104410 -22803160 + MLT1I LTR MaLR 321 389 -20 2261 82 3 32 chr21 22105095 22105410 -22802160 - AluSc SINE Alu -3 306 1 25 0 0 0 chr21 22106275 22106300 -22801270 + AT_rich Low_complexity Low_complexity 1 25 0 2444 133 27 0 chr21 22106744 22107158 -22800412 - MER57B LTR ERV1 -9 425 1 1222 179 58 52 chr21 22107231 22107556 -22800014 + MLT1B LTR MaLR 3 329 -61 1981 129 4 0 chr21 22107560 22107839 -22799731 + AluSx SINE Alu 1 280 -32 402 162 0 0 chr21 22107843 22107917 -22799653 + GA-rich Low_complexity Low_complexity 2 75 0 398 310 128 5 chr21 22108232 22108435 -22799135 + MLT1H LTR MaLR 1 228 -321 2163 119 3 0 chr21 22108694 22109027 -22798543 + AluSp SINE Alu 1 334 0 2330 92 0 13 chr21 22109470 22109775 -22797795 - AluSg SINE Alu -9 301 1 475 203 118 1 chr21 22110539 22110676 -22796894 - MLT1B LTR MaLR -8 382 253 229 130 0 43 chr21 22110777 22110823 -22796747 + MER31B LTR ERV1 1 44 -422 1137 179 8 33 chr21 22110865 22111105 -22796465 - MLT1B LTR MaLR -156 234 1 1559 244 29 25 chr21 22111457 22111978 -22795592 - L1MD3 LINE L1 -31 7964 7442 242 362 9 26 chr21 22112378 22112494 -22795076 + MIR SINE MIR 2 115 -147 1681 200 23 80 chr21 22112496 22112936 -22794634 - MLT2B3 LTR ERVL 0 554 140 679 83 10 0 chr21 22112936 22113032 -22794538 - AluSc SINE Alu -5 304 208 436 18 83 54 chr21 22113035 22113203 -22794367 + (TA)n Simple_repeat Simple_repeat 2 174 0 863 226 0 12 chr21 22113215 22113408 -22794162 + AluJb SINE Alu 125 312 0 31 26 0 0 chr21 22114343 22114381 -22793189 + AT_rich Low_complexity Low_complexity 1 38 0 2310 111 0 0 chr21 22114511 22114817 -22792753 - AluSg SINE Alu -4 306 1 1588 123 6 89 chr21 22114943 22115259 -22792311 - MER4A LTR ERV1 0 664 375 2021 110 0 58 chr21 22115298 22115608 -22791962 - AluSg SINE Alu -18 292 1 613 175 15 7 chr21 22115608 22115745 -22791825 - MER4A LTR ERV1 -526 138 1 1090 305 78 12 chr21 22115944 22116370 -22791200 + LTR16B LTR ERVL 11 464 0 683 231 103 5 chr21 22116893 22117088 -22790482 - MER20 DNA MER1_type -2 217 4 1806 55 0 0 chr21 22117112 22117330 -22790240 + AluY SINE Alu 1 218 -93 21 57 0 0 chr21 22117756 22117791 -22789779 + AT_rich Low_complexity Low_complexity 1 35 0 404 312 16 16 chr21 22117807 22117932 -22789638 - L2 LINE L2 0 3313 3189 3226 145 52 94 chr21 22118199 22119018 -22788552 + LTR1 LTR ERV1 1 785 0 205 152 0 0 chr21 22119942 22119975 -22787595 + (CA)n Simple_repeat Simple_repeat 2 34 0 1380 204 73 9 chr21 22120036 22120365 -22787205 + MLT1A1 LTR MaLR 16 365 0 2499 103 21 5 chr21 22121880 22122258 -22785312 + MLT2A1 LTR ERVL 1 384 -60 507 17 0 0 chr21 22122258 22122318 -22785252 + (TA)n Simple_repeat Simple_repeat 2 61 0 1123 128 0 0 chr21 22122318 22122467 -22785103 - AluSc SINE Alu -158 151 3 500 175 10 0 chr21 22122471 22122568 -22785002 - L1MD2 LINE L1 -468 5891 5794 25 51 0 0 chr21 22122575 22122614 -22784956 + AT_rich Low_complexity Low_complexity 1 39 0 243 127 14 70 chr21 22122614 22122685 -22784885 + A-rich Low_complexity Low_complexity 5 71 0 987 73 0 8 chr21 22122696 22122819 -22784751 - AluSq SINE Alu -95 218 97 336 60 0 20 chr21 22122832 22122882 -22784688 + MLT2A1 LTR ERVL 405 453 0 1985 108 3 14 chr21 22123362 22123648 -22783922 + AluSc SINE Alu 1 283 -26 22 0 0 0 chr21 22123649 22123671 -22783899 + AT_rich Low_complexity Low_complexity 1 22 0 2358 64 0 0 chr21 22123916 22124245 -22783325 - AluY SINE Alu 0 331 3 31 26 0 0 chr21 22124853 22124891 -22782679 + AT_rich Low_complexity Low_complexity 1 38 0 345 265 53 26 chr21 22126417 22126568 -22781002 - L1MD2 LINE L1 -7 6352 6198 404 285 0 29 chr21 22126587 22126724 -22780846 - L1MD2 LINE L1 -233 6126 5994 930 233 96 52 chr21 22126724 22127162 -22780408 + MLT2C2 LTR ERVL 1 457 -7 2175 107 17 0 chr21 22127215 22127505 -22780065 - AluSc SINE Alu -14 295 1 358 244 11 0 chr21 22127514 22127604 -22779966 - L1MD2 LINE L1 -474 5885 5795 180 152 0 0 chr21 22127706 22127739 -22779831 + (CA)n Simple_repeat Simple_repeat 2 34 0 924 374 103 10 chr21 22127989 22128053 -22779517 + ERVL LTR ERVL 807 864 -4132 570 54 0 0 chr21 22128053 22128127 -22779443 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 924 374 103 10 chr21 22128127 22128773 -22778797 + ERVL LTR ERVL 864 1583 -3413 845 268 12 20 chr21 22128895 22129145 -22778425 + MLT1D LTR MaLR 257 504 -1 481 351 66 13 chr21 22129145 22129447 -22778123 + ERVL LTR ERVL 1681 1998 -2998 2152 130 132 5 chr21 22129619 22129997 -22777573 - MSTA LTR MaLR 0 428 3 7450 164 95 24 chr21 22129999 22131472 -22776098 - MSTA-int LTR MaLR 0 1580 3 1804 159 148 5 chr21 22131477 22131849 -22775721 - MSTA LTR MaLR -3 425 1 1143 317 80 13 chr21 22131849 22132448 -22775122 + ERVL LTR ERVL 2189 2827 -2169 1197 322 95 22 chr21 22132455 22132993 -22774577 + MLT1E LTR MaLR 17 593 0 505 256 44 7 chr21 22133074 22133211 -22774359 - MER58B DNA MER1_type -1 340 199 355 304 127 43 chr21 22133390 22133759 -22773811 + ERVL LTR ERVL 3028 3427 -2058 805 336 70 57 chr21 22134037 22134969 -22772601 + ERVL LTR ERVL 3678 4659 -1105 2252 115 3 0 chr21 22134969 22135273 -22772297 - AluSp SINE Alu -8 305 1 805 336 70 57 chr21 22135273 22135566 -22772004 + ERVL LTR ERVL 4659 4947 -817 2196 82 3 31 chr21 22135922 22136240 -22771330 - AluY SINE Alu -2 309 1 346 350 11 43 chr21 22136269 22136455 -22771115 + LTR16A LTR ERVL 89 268 -182 * 1367 163 77 77 chr21 22136450 22136776 -22770794 - Tigger1 DNA MER2_type -2092 326 1 5437 40 0 1 chr21 22137521 22138205 -22769365 - L1PA4 LINE L1 0 6155 5485 2221 117 0 0 chr21 22138671 22138969 -22768601 - AluSx SINE Alu -14 298 1 189 213 0 0 chr21 22139095 22139142 -22768428 + (TA)n Simple_repeat Simple_repeat 1 47 0 305 292 117 0 chr21 22139168 22139288 -22768282 - L2 LINE L2 -1 3312 3179 681 349 105 9 chr21 22139572 22140077 -22767493 - L2 LINE L2 -16 3297 2747 1840 121 57 0 chr21 22140643 22140925 -22766645 + AluSx SINE Alu 1 298 -14 22 35 0 0 chr21 22142086 22142115 -22765455 + AT_rich Low_complexity Low_complexity 1 29 0 815 125 7 0 chr21 22142285 22142421 -22765149 + L1MA4 LINE L1 6158 6294 -6 21 36 0 0 chr21 22143533 22143561 -22764009 + AT_rich Low_complexity Low_complexity 1 28 0 360 167 56 0 chr21 22143998 22144088 -22763482 - L1MB4 LINE L1 0 6180 6086 631 250 19 6 chr21 22144261 22144417 -22763153 + MER5A DNA MER1_type 32 189 0 2652 23 3 0 chr21 22145302 22145604 -22761966 - AluY SINE Alu -8 303 1 489 341 29 0 chr21 22145993 22146166 -22761404 - MIR SINE MIR -60 202 25 30 69 0 0 chr21 22146311 22146369 -22761201 + AT_rich Low_complexity Low_complexity 1 58 0 1343 167 23 17 chr21 22147992 22148292 -22759278 + L1MA9 LINE L1 6011 6312 0 4281 152 37 51 chr21 22148504 22149342 -22758228 + LTR1B LTR ERV1 1 826 0 316 276 164 33 chr21 22149620 22149772 -22757798 + MIR SINE MIR 86 257 -5 321 287 75 0 chr21 22150235 22150329 -22757241 - MIR SINE MIR -76 186 86 195 414 33 17 chr21 22150481 22150662 -22756908 - MIR3 SINE MIR -6 202 19 4658 170 26 21 chr21 22151027 22152226 -22755344 + L1PB4 LINE L1 4947 6156 0 566 269 77 16 chr21 22152944 22153126 -22754444 + MIR SINE MIR 5 197 -65 580 236 93 62 chr21 22153561 22153723 -22753847 + MER61D LTR ERV1 338 542 -11 1948 73 4 23 chr21 22153761 22154022 -22753548 + AluY SINE Alu 40 295 -16 186 208 0 0 chr21 22154762 22154810 -22752760 + (TG)n Simple_repeat Simple_repeat 1 48 0 2179 92 0 0 chr21 22155454 22155736 -22751834 - AluSc SINE Alu -7 302 21 2125 100 7 4 chr21 22157428 22157744 -22749826 - AluY SINE Alu 0 317 1 33 90 0 0 chr21 22158378 22158467 -22749103 + AT_rich Low_complexity Low_complexity 1 89 0 269 250 0 102 chr21 22158899 22158987 -22748583 + MER91A DNA MER1_type 118 196 0 2273 114 0 0 chr21 22159019 22159316 -22748254 - AluSc SINE Alu -12 297 1 267 59 0 0 chr21 22159316 22159350 -22748220 - L1P LINE L1 -727 5427 5394 5474 61 0 0 chr21 22159351 22160044 -22747526 + L1PA7 LINE L1 5459 6151 -3 24 32 0 0 chr21 22160050 22160081 -22747489 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 22161272 22161294 -22746276 + AT_rich Low_complexity Low_complexity 1 22 0 467 220 23 12 chr21 22161834 22162007 -22745563 + GA-rich Low_complexity Low_complexity 4 178 0 1973 151 3 0 chr21 22162824 22163122 -22744448 + AluSx SINE Alu 5 303 -9 880 250 101 32 chr21 22163125 22163505 -22744065 - LTR40c LTR ERVL -12 450 63 231 189 0 0 chr21 22164625 22164678 -22742892 + CT-rich Low_complexity Low_complexity 2 54 0 326 285 57 16 chr21 22164754 22164877 -22742693 - MIR SINE MIR -56 206 79 2300 67 0 11 chr21 22164931 22165244 -22742326 + AluY SINE Alu 3 312 0 27 0 0 0 chr21 22165736 22165763 -22741807 + AT_rich Low_complexity Low_complexity 1 27 0 2180 93 3 0 chr21 22165878 22166178 -22741392 + AluSx SINE Alu 1 301 -11 866 249 251 20 chr21 22167439 22167893 -22739677 + LTR50 LTR ERVL 1 559 -236 232 238 56 77 chr21 22167938 22168010 -22739560 + LTR50 LTR ERVL 543 612 -183 1739 133 54 43 chr21 22168010 22168379 -22739191 + THE1C LTR MaLR 2 374 -1 232 238 56 77 chr21 22168379 22168449 -22739121 + LTR50 LTR ERVL 612 682 -113 990 251 30 39 chr21 22169081 22169416 -22738154 - MLT2C1 LTR ERVL -65 332 1 180 0 0 0 chr21 22169555 22169575 -22737995 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 849 335 29 62 chr21 22169576 22169787 -22737783 + ERVL LTR ERVL 813 1029 -4735 923 208 41 129 chr21 22169787 22170297 -22737273 + MER4C LTR ERV1 1 465 0 849 335 29 62 chr21 22170297 22170775 -22736795 + ERVL LTR ERVL 1029 1479 -4285 701 324 75 35 chr21 22170874 22171247 -22736323 + LTR16B LTR ERVL 77 464 0 954 368 81 25 chr21 22171253 22172125 -22735445 + ERVL LTR ERVL 1496 2416 -3348 424 281 119 45 chr21 22172399 22172450 -22735120 + L1ME4a LINE L1 5546 5592 -529 3793 153 52 90 chr21 22172450 22172681 -22734889 + MER4D LTR ERV1 1 239 -664 2307 104 0 7 chr21 22172681 22172990 -22734580 + AluY SINE Alu 1 307 -4 3793 153 52 90 chr21 22172990 22173696 -22733874 + MER4D LTR ERV1 239 903 0 424 281 119 45 chr21 22173696 22173827 -22733743 + L1ME4a LINE L1 5592 5712 -409 3772 112 30 28 chr21 22173827 22174426 -22733144 - MER4A LTR ERV1 0 600 1 424 281 119 45 chr21 22174426 22174577 -22732993 + L1ME4a LINE L1 5712 5905 -216 22 0 0 0 chr21 22174681 22174703 -22732867 + AT_rich Low_complexity Low_complexity 1 22 0 453 196 10 0 chr21 22174785 22174882 -22732688 - MER58 DNA MER1_type -4 2416 2319 22 0 0 0 chr21 22175063 22175085 -22732485 + AT_rich Low_complexity Low_complexity 1 22 0 225 349 72 0 chr21 22175115 22175198 -22732372 + L2 LINE L2 3225 3313 0 22 56 0 0 chr21 22175525 22175561 -22732009 + AT_rich Low_complexity Low_complexity 1 36 0 31 58 0 0 chr21 22175768 22175820 -22731750 + AT_rich Low_complexity Low_complexity 1 52 0 1490 210 78 19 chr21 22175896 22176268 -22731302 + MSTD LTR MaLR 3 396 0 234 0 0 0 chr21 22177045 22177071 -22730499 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2167 79 0 14 chr21 22177075 22177365 -22730205 - AluY SINE Alu -25 286 1 560 286 43 0 chr21 22177537 22177698 -22729872 - L2 LINE L2 -342 2972 2805 2088 215 15 12 chr21 22177710 22178128 -22729442 - MSTB LTR MaLR -6 411 1 268 151 94 0 chr21 22178264 22178317 -22729253 + LTR40a LTR ERVL 80 137 -382 182 203 0 17 chr21 22178326 22178385 -22729185 + (TA)n Simple_repeat Simple_repeat 2 59 0 29 0 0 0 chr21 22178444 22178473 -22729097 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr21 22178557 22178600 -22728970 + AT_rich Low_complexity Low_complexity 1 43 0 255 339 18 28 chr21 22179024 22179133 -22728437 + L2 LINE L2 3204 3311 -2 2101 126 0 0 chr21 22179227 22179521 -22728049 - AluSg SINE Alu -16 294 1 2769 7 0 0 chr21 22179792 22180093 -22727477 + AluYa5 SINE Alu 1 301 -10 636 308 22 0 chr21 22180195 22180380 -22727190 + MER5A DNA MER1_type 1 189 0 250 302 32 24 chr21 22180475 22180601 -22726969 + MIR SINE MIR 75 201 -61 186 167 0 0 chr21 22181130 22181166 -22726404 + (CA)n Simple_repeat Simple_repeat 1 36 0 32 75 0 0 chr21 22181204 22181271 -22726299 + AT_rich Low_complexity Low_complexity 1 67 0 759 225 47 0 chr21 22181504 22181673 -22725897 + MER20 DNA MER1_type 1 177 -42 257 164 115 0 chr21 22182352 22182413 -22725157 - MLT1I LTR MaLR -23 386 319 1153 192 28 66 chr21 22182563 22182850 -22724720 - MER68 LTR ERV1 0 562 287 2375 84 3 0 chr21 22185276 22185575 -22721995 - AluSg SINE Alu -6 304 5 351 113 0 0 chr21 22185648 22185701 -22721869 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 30 27 0 0 chr21 22185918 22185955 -22721615 + AT_rich Low_complexity Low_complexity 1 37 0 402 258 40 112 chr21 22186041 22186240 -22721330 - MIR SINE MIR -65 143 17 798 333 117 11 chr21 22186381 22186654 -22720916 + L2 LINE L2 1390 1633 -1681 276 30 0 0 chr21 22186654 22186687 -22720883 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 798 333 117 11 chr21 22186687 22186882 -22720688 + L2 LINE L2 1633 1908 -1406 330 257 0 0 chr21 22187051 22187121 -22720449 + L2 LINE L2 3244 3313 0 2948 195 29 4 chr21 22187684 22188243 -22719327 + Tigger7 DNA MER2_type 1 573 -160 972 160 34 10 chr21 22188244 22188450 -22719120 + Tigger7 DNA MER2_type 2375 2585 -2 21 67 0 40 chr21 22190612 22190687 -22716883 + AT_rich Low_complexity Low_complexity 1 72 0 292 330 102 34 chr21 22191153 22191389 -22716181 - MIR SINE MIR -6 256 5 1236 234 45 54 chr21 22191703 22192203 -22715367 - MER89 LTR ERV1 0 559 2 207 265 0 20 chr21 22192401 22192450 -22715120 + MER5A DNA MER1_type 11 58 -131 230 203 0 14 chr21 22192798 22192867 -22714703 + CT-rich Low_complexity Low_complexity 1 68 0 755 223 0 89 chr21 22192894 22193058 -22714512 + MLT1A2 LTR MaLR 2 142 -232 1952 89 17 14 chr21 22193058 22193351 -22714219 + L1PA10 LINE L1 5871 6164 -4 755 223 0 89 chr21 22193351 22193410 -22714160 + MLT1A2 LTR MaLR 142 205 -169 203 345 0 0 chr21 22193422 22193477 -22714093 + L2 LINE L2 3203 3257 -15 28 0 0 0 chr21 22194379 22194407 -22713163 + AT_rich Low_complexity Low_complexity 1 28 0 734 269 147 31 chr21 22194561 22194881 -22712689 - LTR18A LTR ERVL 0 357 1 36592 151 24 20 chr21 22194882 22200824 -22706746 - HERVL18 LTR ERVL 0 6047 82 14045 184 19 22 chr21 22200843 22204631 -22702939 - L1MA3 LINE L1 -448 7276 3485 2238 120 0 0 chr21 22204631 22204940 -22702630 - AluSg1 SINE Alu 0 309 1 14045 184 19 22 chr21 22204940 22205347 -22702223 - L1MA3 LINE L1 -4239 3485 3078 3792 159 15 48 chr21 22205347 22206007 -22701563 + L1MA3 LINE L1 5509 6139 -166 1945 118 4 0 chr21 22206007 22206270 -22701300 + AluSp SINE Alu 31 294 -19 3792 159 15 48 chr21 22206270 22206419 -22701151 + L1MA3 LINE L1 6139 6291 -14 25 65 0 0 chr21 22206616 22206662 -22700908 + AT_rich Low_complexity Low_complexity 1 46 0 1952 150 7 0 chr21 22206819 22207113 -22700457 - AluSx SINE Alu -16 296 1 354 162 0 15 chr21 22207673 22207741 -22699829 + L1M1 LINE L1 5489 5555 -749 519 272 44 6 chr21 22207771 22207951 -22699619 - L1MC4a LINE L1 -1894 5914 5728 24 53 0 0 chr21 22209054 22209092 -22698478 + AT_rich Low_complexity Low_complexity 1 38 0 192 420 0 0 chr21 22209348 22209417 -22698153 + L2 LINE L2 2901 2969 -345 248 353 86 12 chr21 22209493 22209748 -22697822 - MLT1L LTR MaLR 0 615 342 1223 210 65 46 chr21 22210020 22210203 -22697367 + MSTD LTR MaLR 3 196 -200 2236 75 0 34 chr21 22210203 22210525 -22697045 + AluY SINE Alu 1 311 0 1223 210 65 46 chr21 22210525 22210665 -22696905 + MSTD LTR MaLR 196 332 -64 2338 56 10 13 chr21 22210668 22210970 -22696600 - AluY SINE Alu -6 305 5 23 68 0 0 chr21 22211007 22211051 -22696519 + AT_rich Low_complexity Low_complexity 1 44 0 1352 136 50 5 chr21 22211267 22211487 -22696083 + MER30 DNA MER1_type 1 230 0 2363 69 7 0 chr21 22212483 22212772 -22694798 - AluY SINE Alu -20 291 1 850 300 50 16 chr21 22214058 22214378 -22693192 + LTR16C LTR ERVL 151 481 -10 913 267 132 44 chr21 22214526 22214889 -22692681 + MER45C DNA AcHobo 1 395 -558 533 196 58 58 chr21 22214905 22215007 -22692563 + MER45C DNA AcHobo 710 814 -767 1413 251 57 26 chr21 22215007 22215497 -22692073 - MLT1D LTR MaLR 0 505 1 533 196 58 58 chr21 22215497 22215532 -22692038 + MER45C DNA AcHobo 813 847 -106 950 206 0 11 chr21 22215553 22215737 -22691833 + FRAM SINE Alu 1 174 -2 820 243 90 118 chr21 22216150 22216218 -22691352 - MLT1D LTR MaLR 0 505 437 1503 211 3 10 chr21 22216218 22216526 -22691044 + AluJo SINE Alu 7 312 0 820 243 90 118 chr21 22216526 22216573 -22690997 - MLT1D LTR MaLR -68 437 390 1673 171 7 4 chr21 22216573 22216853 -22690717 + AluJb SINE Alu 7 287 -25 820 243 90 118 chr21 22216853 22217234 -22690336 - MLT1D LTR MaLR -115 390 22 2135 127 14 35 chr21 22217436 22217806 -22689764 + THE1B LTR MaLR 3 364 0 3072 101 16 2 chr21 22217806 22218294 -22689276 + THE1B-int LTR MaLR 1 488 -1150 393 191 0 0 chr21 22218295 22218358 -22689212 - THE1-int LTR MaLR -439 1141 1079 * 2116 83 0 0 chr21 22218354 22218630 -22688940 - THE1-int LTR MaLR -89 1491 1216 1590 40 0 0 chr21 22218645 22218843 -22688727 + THE1B-int LTR MaLR 1383 1580 0 1974 148 30 39 chr21 22218846 22219210 -22688360 + THE1B LTR MaLR 4 364 0 1980 89 51 51 chr21 22219515 22219808 -22687762 - AluSc SINE Alu -16 293 1 2527 60 0 10 chr21 22220164 22220478 -22687092 - AluY SINE Alu 0 311 1 500 270 68 60 chr21 22220942 22221190 -22686380 + MIR SINE MIR 4 253 -9 182 275 101 0 chr21 22223260 22223329 -22684241 - L3b LINE CR1 -201 1382 1307 1724 167 7 10 chr21 22223463 22223756 -22683814 - AluJb SINE Alu -20 292 1 721 183 0 0 chr21 22223865 22223980 -22683590 + FLAM_C SINE Alu 8 122 -21 1963 246 45 31 chr21 22225087 22225719 -22681851 - L1MD3 LINE L1 -98 7882 7059 1640 219 5 20 chr21 22225719 22225928 -22681642 - MLT1B LTR MaLR -4 386 184 279 0 0 0 chr21 22225928 22225959 -22681611 + (TC)n Simple_repeat Simple_repeat 2 32 0 1640 219 5 20 chr21 22225959 22226141 -22681429 - MLT1B LTR MaLR -206 184 1 1963 246 45 31 chr21 22226141 22226400 -22681170 - L1MD3 LINE L1 -921 7059 6805 246 264 0 0 chr21 22226457 22226510 -22681060 - MLT1I LTR MaLR -254 155 103 401 245 56 14 chr21 22227101 22227244 -22680326 + MER103 DNA DNA 8 156 -10 251 297 97 35 chr21 22227258 22227403 -22680167 - LTR16C LTR ERVL -14 477 324 200 103 51 0 chr21 22228325 22228364 -22679206 + (TATG)n Simple_repeat Simple_repeat 3 43 0 2373 59 3 0 chr21 22228739 22229066 -22678504 - AluY SINE Alu 0 328 1 1938 161 0 0 chr21 22230113 22230412 -22677158 + AluSx SINE Alu 1 299 -13 1512 172 0 75 chr21 22230922 22231241 -22676329 + AluJo SINE Alu 1 295 -17 268 227 91 23 chr21 22231541 22231629 -22675941 + L1MC4a LINE L1 6574 6667 -1141 1995 134 0 0 chr21 22231771 22232048 -22675522 + AluSc SINE Alu 1 277 -32 212 0 36 0 chr21 22232051 22232079 -22675491 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 657 244 63 60 chr21 22232082 22232397 -22675173 + L1MC5 LINE L1 6923 7238 -723 1835 190 3 6 chr21 22233114 22233440 -22674130 + Tigger1 DNA MER2_type 26 350 -2068 912 164 18 12 chr21 22233634 22233799 -22673771 + THE1B LTR MaLR 184 349 -15 262 278 104 21 chr21 22234147 22234291 -22673279 - L1ME LINE L1 -5867 203 48 2459 124 8 6 chr21 22234295 22234658 -22672912 - THE1B LTR MaLR 0 364 1 9725 122 51 3 chr21 22234658 22236165 -22671405 - THE1B-int LTR MaLR 0 1580 2 2507 106 19 6 chr21 22236166 22236525 -22671045 - THE1B LTR MaLR 0 364 1 228 184 0 0 chr21 22236648 22236697 -22670873 + (TATG)n Simple_repeat Simple_repeat 2 50 0 853 251 25 20 chr21 22236818 22237021 -22670549 - MER58A DNA MER1_type -15 209 6 1773 112 56 0 chr21 22237110 22237360 -22670210 + AluSq SINE Alu 23 286 -27 387 0 0 0 chr21 22237479 22237522 -22670048 + (TG)n Simple_repeat Simple_repeat 2 44 0 262 338 131 7 chr21 22237898 22238043 -22669527 - L2 LINE L2 -10 3262 3100 22 88 0 0 chr21 22238255 22238312 -22669258 + AT_rich Low_complexity Low_complexity 1 57 0 1948 112 63 0 chr21 22239571 22239857 -22667713 - AluSq SINE Alu -5 308 5 1288 205 39 39 chr21 22240249 22240561 -22667009 + AluJo SINE Alu 1 312 0 1948 225 46 11 chr21 22241433 22241890 -22665680 + MER67A LTR ERV1 71 543 0 653 273 34 19 chr21 22241905 22242110 -22665460 + MER109 Unknown Unknown 1603 1810 -622 3345 225 35 7 chr21 22242710 22243366 -22664204 - L1MB7 LINE L1 -18 6166 5481 2010 87 55 3 chr21 22243366 22243655 -22663915 - AluY SINE Alu -7 304 1 3345 225 35 7 chr21 22243655 22243828 -22663742 - L1MB7 LINE L1 -703 5481 5314 387 183 24 0 chr21 22243831 22243913 -22663657 + L1M LINE L1 5330 5413 -767 251 140 0 20 chr21 22243915 22243965 -22663605 + L1M LINE L1 5258 5306 -860 * 1231 222 38 0 chr21 22243962 22244304 -22663266 - L1MB7 LINE L1 -829 5317 4963 763 172 0 0 chr21 22244309 22244437 -22663133 + MLT2B2 LTR ERVL 1 128 -387 1993 179 55 26 chr21 22244438 22244935 -22662635 + MLT2A2 LTR ERVL 1 517 -37 432 0 0 0 chr21 22244935 22244983 -22662587 + (TA)n Simple_repeat Simple_repeat 2 49 0 1993 179 55 26 chr21 22244983 22245021 -22662549 + MLT2A2 LTR ERVL 517 552 -2 1044 170 340 57 chr21 22245023 22245358 -22662212 + MLT2B2 LTR ERVL 125 515 0 537 293 47 9 chr21 22245358 22245570 -22662000 - L1MB7 LINE L1 -1184 4962 4743 428 255 28 0 chr21 22245579 22245685 -22661885 + L1M4 LINE L1 4499 4607 -1539 2323 219 28 68 chr21 22245764 22246490 -22661080 - L1M4c LINE L1 -5482 1060 376 681 209 77 22 chr21 22246498 22246680 -22660890 - LTR47A LTR ERVL 0 452 261 1135 263 20 51 chr21 22246910 22247301 -22660269 - L1M4c LINE L1 -6163 379 1 726 28 0 28 chr21 22247484 22247592 -22659978 + (TA)n Simple_repeat Simple_repeat 1 105 0 2179 251 129 14 chr21 22248233 22249014 -22658556 - L1MC4 LINE L1 -4 8038 7168 2418 143 0 3 chr21 22250243 22250607 -22656963 + THE1B LTR MaLR 1 363 -1 9477 127 36 37 chr21 22250609 22252188 -22655382 + THE1B-int LTR MaLR 2 1578 -2 2121 139 11 37 chr21 22252190 22252564 -22655006 + THE1B LTR MaLR 1 364 0 26 93 0 0 chr21 22252650 22252725 -22654845 + AT_rich Low_complexity Low_complexity 1 75 0 201 273 50 61 chr21 22252835 22252934 -22654636 + MIR SINE MIR 38 135 -73 1100 223 123 26 chr21 22253061 22253402 -22654168 + MLT1A2 LTR MaLR 1 374 0 1634 187 0 3 chr21 22253594 22253900 -22653670 - AluJb SINE Alu 0 307 3 293 299 58 92 chr21 22255268 22255475 -22652095 + MIR3 SINE MIR 3 202 -6 21 0 0 0 chr21 22255629 22255650 -22651920 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 22256488 22256516 -22651054 + AT_rich Low_complexity Low_complexity 1 28 0 414 255 82 49 chr21 22256851 22257094 -22650476 - HAL1 LINE L1 -47 2460 2210 461 296 45 40 chr21 22257408 22257584 -22649986 + MIR3 SINE MIR 29 205 -3 265 261 200 35 chr21 22257779 22257894 -22649676 - MER5A DNA MER1_type -3 186 53 501 128 0 0 chr21 22258370 22258448 -22649122 + L1PB4 LINE L1 6077 6154 -2 228 303 92 0 chr21 22259220 22259296 -22648274 - L2 LINE L2 -20 3252 3170 23 68 0 0 chr21 22260536 22260580 -22646990 + AT_rich Low_complexity Low_complexity 1 44 0 572 227 8 23 chr21 22260759 22260891 -22646679 - AluJo SINE Alu -76 236 107 252 373 59 0 chr21 22262874 22262992 -22644578 + MIR SINE MIR 119 243 -19 184 352 34 23 chr21 22263662 22263750 -22643820 + L2 LINE L2 3180 3268 -4 190 104 21 42 chr21 22264252 22264300 -22643270 + (GAAA)n Simple_repeat Simple_repeat 4 50 0 390 304 60 116 chr21 22264308 22264758 -22642812 + L1ME LINE L1 563 987 -5543 227 233 53 58 chr21 22265096 22265302 -22642268 + L1ME LINE L1 1150 1354 -5176 358 315 39 9 chr21 22265534 22265766 -22641804 + L1ME LINE L1 1461 1699 -4841 189 0 0 0 chr21 22266020 22266041 -22641529 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 358 262 76 35 chr21 22266041 22266186 -22641384 + L1ME LINE L1 2367 2543 -4023 992 203 5 0 chr21 22266187 22266389 -22641181 + L1PBa LINE L1 2 204 -6659 * 9919 130 56 8 chr21 22266380 22268067 -22639503 + L1PBa LINE L1 1113 2880 -3983 1331 263 147 13 chr21 22268071 22269024 -22638546 + L1ME LINE L1 2814 3894 -2646 1807 94 8 0 chr21 22269099 22269334 -22638236 + AluSq SINE Alu 1 237 -76 26 50 0 0 chr21 22269757 22269797 -22637773 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr21 22270558 22270579 -22636991 + AT_rich Low_complexity Low_complexity 1 21 0 519 332 73 52 chr21 22271578 22272043 -22635527 - L2 LINE L2 -36 3277 2798 659 352 73 20 chr21 22272048 22272252 -22635318 + LTR33 LTR ERVL 1 193 -328 1628 228 22 3 chr21 22272252 22272608 -22634962 + MLT1A1 LTR MaLR 3 365 0 659 352 73 20 chr21 22272608 22272895 -22634675 + LTR33 LTR ERVL 193 518 -3 1731 125 92 25 chr21 22273239 22273520 -22634050 + AluSx SINE Alu 1 300 -12 491 56 0 14 chr21 22274635 22274706 -22632864 - Alu SINE Alu -14 296 227 197 348 25 51 chr21 22274933 22275051 -22632519 - L2 LINE L2 0 3272 3158 1220 231 56 6 chr21 22277002 22277326 -22630244 + MLT1H LTR MaLR 10 349 -200 226 293 17 0 chr21 22277507 22277565 -22630005 - L2 LINE L2 -4 3268 3210 21 0 0 0 chr21 22277833 22277854 -22629716 + AT_rich Low_complexity Low_complexity 1 21 0 2240 107 7 0 chr21 22278581 22278889 -22628681 + AluSx SINE Alu 1 310 -2 234 0 0 0 chr21 22280564 22280590 -22626980 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 413 275 75 44 chr21 22280602 22280920 -22626650 - MLT1J1 LTR MaLR -99 351 25 1633 113 0 0 chr21 22280983 22281204 -22626366 - AluSg/x SINE Alu -26 286 66 294 29 0 0 chr21 22281205 22281240 -22626330 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 617 156 0 104 chr21 22281250 22281404 -22626166 - MLT1B LTR MaLR -244 146 9 221 246 66 0 chr21 22281641 22281702 -22625868 + MIR SINE MIR 78 142 -120 1634 154 3 66 chr21 22282130 22282448 -22625122 + AluSx SINE Alu 1 298 -14 211 324 10 0 chr21 22282464 22282566 -22625004 + (TA)n Simple_repeat Simple_repeat 2 104 0 294 229 69 90 chr21 22282696 22282884 -22624686 - Charlie7 DNA MER1_type -241 2371 2188 247 290 60 0 chr21 22282908 22283008 -22624562 - Charlie7 DNA MER1_type -1970 642 537 186 43 0 0 chr21 22283061 22283084 -22624486 + (T)n Simple_repeat Simple_repeat 1 23 0 2274 68 0 0 chr21 22283160 22283453 -22624117 - L1PA6 LINE L1 -95 6059 5767 282 313 108 34 chr21 22283453 22283868 -22623702 - Charlie7 DNA MER1_type -2137 475 30 360 302 67 22 chr21 22284916 22285095 -22622475 - MIR SINE MIR -10 252 66 817 223 23 41 chr21 22285217 22285437 -22622133 - MER20 DNA MER1_type 0 219 4 216 38 0 94 chr21 22286505 22286558 -22621012 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 475 250 63 105 chr21 22287232 22287564 -22620006 - MER5C DNA MER1_type -1 323 6 2199 176 60 2 chr21 22287654 22288057 -22619513 + MSTB LTR MaLR 1 426 0 2133 121 3 0 chr21 22288079 22288376 -22619194 + AluSq SINE Alu 1 298 -15 219 88 0 0 chr21 22288376 22288410 -22619160 + (CATA)n Simple_repeat Simple_repeat 3 36 0 288 377 129 15 chr21 22288419 22289071 -22618499 + L2 LINE L2 1516 2241 -1073 409 239 28 56 chr21 22289075 22289255 -22618315 + MER104 DNA Tc2 2 176 -4 390 369 54 16 chr21 22289491 22289805 -22617765 + L2 LINE L2 2370 2695 -619 25 65 0 0 chr21 22291531 22291577 -22615993 + AT_rich Low_complexity Low_complexity 1 46 0 1598 140 238 11 chr21 22291600 22291949 -22615621 - MSTA LTR MaLR 0 428 1 189 107 0 0 chr21 22292043 22292071 -22615499 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 52 96 0 0 chr21 22292142 22292299 -22615271 + AT_rich Low_complexity Low_complexity 1 157 0 218 158 0 35 chr21 22292305 22292362 -22615208 + T-rich Low_complexity Low_complexity 6 60 0 2286 61 6 64 chr21 22293459 22293788 -22613782 - AluY SINE Alu -1 310 1 186 43 0 0 chr21 22294392 22294415 -22613155 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1522 175 7 0 chr21 22294416 22294707 -22612863 - L1P LINE L1 -851 5295 5003 5643 92 12 9 chr21 22294707 22295504 -22612066 + L1PA11 LINE L1 5374 6173 -1 1989 120 0 26 chr21 22296009 22296317 -22611253 - AluSg SINE Alu -10 300 1 316 299 8 22 chr21 22296364 22296498 -22611072 + MER5C DNA MER1_type 190 321 -3 248 232 74 42 chr21 22297927 22298011 -22609559 - MER5A DNA MER1_type -4 185 85 5991 86 34 14 chr21 22298011 22299038 -22608532 - L1PA8A LINE L1 0 6131 5102 285 330 28 9 chr21 22299048 22299157 -22608413 + MER5A DNA MER1_type 55 165 -24 21 0 0 0 chr21 22299366 22299387 -22608183 + AT_rich Low_complexity Low_complexity 1 21 0 262 409 29 0 chr21 22299469 22299606 -22607964 + MIR SINE MIR 49 189 -73 926 232 90 11 chr21 22299705 22300061 -22607509 + MLT2B1 LTR ERVL 50 489 -26 309 342 0 8 chr21 22300640 22300757 -22606813 - MIR SINE MIR -73 189 74 1769 177 3 26 chr21 22301798 22302143 -22605427 + MER1B DNA MER1_type 1 337 0 716 111 7 0 chr21 22302290 22302425 -22605145 + (TC)n Simple_repeat Simple_repeat 1 136 0 1222 219 8 8 chr21 22302790 22303037 -22604533 - MLT1C LTR MaLR 0 467 221 325 213 6 17 chr21 22303124 22303211 -22604359 - MLT1C LTR MaLR -359 108 39 351 0 0 0 chr21 22303211 22303250 -22604320 + (CA)n Simple_repeat Simple_repeat 2 40 0 227 30 0 30 chr21 22303260 22303293 -22604277 + (TA)n Simple_repeat Simple_repeat 2 33 0 230 133 22 0 chr21 22303294 22303339 -22604231 - LTR66 LTR ERVL -171 439 394 427 176 11 33 chr21 22303352 22303534 -22604036 + (TA)n Simple_repeat Simple_repeat 2 179 0 234 81 0 0 chr21 22303545 22303582 -22603988 + (CA)n Simple_repeat Simple_repeat 2 38 0 262 366 0 0 chr21 22304770 22304871 -22602699 - ERVL LTR ERVL -743 5021 4921 589 360 59 25 chr21 22305143 22305535 -22602035 - ERVL LTR ERVL -1145 4509 4105 683 314 98 60 chr21 22305587 22305778 -22601792 - ERVL LTR ERVL -1732 4032 3850 2509 136 3 0 chr21 22305778 22306152 -22601418 + THE1C LTR MaLR 1 375 0 683 314 98 60 chr21 22306152 22306746 -22600824 - ERVL LTR ERVL -1914 3850 3217 356 336 117 25 chr21 22306802 22307204 -22600366 - ERVL LTR ERVL -2588 3066 2628 245 185 0 0 chr21 22307901 22307955 -22599615 + L1MC4 LINE L1 7987 8040 -2 183 80 0 0 chr21 22307974 22307999 -22599571 + (GA)n Simple_repeat Simple_repeat 2 26 0 287 288 234 40 chr21 22308010 22308236 -22599334 + L2 LINE L2 1572 1841 -1473 282 253 24 36 chr21 22308262 22308345 -22599225 + L2 LINE L2 2347 2428 -886 637 294 106 75 chr21 22308347 22308778 -22598792 + L2 LINE L2 2601 3060 -253 1826 106 91 7 chr21 22308778 22309052 -22598518 - AluSx SINE Alu -15 297 1 637 294 106 75 chr21 22309052 22309311 -22598259 + L2 LINE L2 3060 3309 -4 23 68 0 0 chr21 22309495 22309539 -22598031 + AT_rich Low_complexity Low_complexity 1 44 0 3715 148 25 0 chr21 22309699 22310353 -22597217 - L1MA4 LINE L1 -6 6294 5625 4478 187 49 3 chr21 22310371 22311351 -22596219 + L1 LINE L1 2982 4006 -2140 1596 152 64 17 chr21 22311355 22311705 -22595865 + MER67C LTR ERV1 33 398 -244 23 0 0 0 chr21 22311896 22311919 -22595651 + AT_rich Low_complexity Low_complexity 1 23 0 218 310 9 0 chr21 22311994 22312107 -22595463 + (TA)n Simple_repeat Simple_repeat 1 114 0 32 26 0 0 chr21 22312175 22312214 -22595356 + AT_rich Low_complexity Low_complexity 1 39 0 1469 185 32 102 chr21 22312536 22312946 -22594624 + MLT1B LTR MaLR 10 390 0 22 70 0 0 chr21 22313091 22313134 -22594436 + AT_rich Low_complexity Low_complexity 1 43 0 905 213 97 13 chr21 22314203 22314513 -22593057 + LTR37A LTR ERV1 89 424 -2 228 222 0 0 chr21 22314737 22314782 -22592788 + (TG)n Simple_repeat Simple_repeat 1 45 0 225 95 4 12 chr21 22315790 22316021 -22591549 + AluSp SINE Alu 1 303 0 307 216 136 0 chr21 22316052 22316140 -22591430 - MIR SINE MIR -90 172 73 13085 189 45 14 chr21 22316227 22321013 -22586557 + L1PB1 LINE L1 3 4639 -2228 189 0 0 0 chr21 22321013 22321034 -22586536 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13085 189 45 14 chr21 22321034 22321938 -22585632 + L1PB1 LINE L1 4639 5513 -1354 198 0 0 0 chr21 22321938 22321960 -22585610 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 13085 189 45 14 chr21 22321960 22322783 -22584787 + L1PB1 LINE L1 5513 6866 -1 526 382 64 12 chr21 22322830 22323173 -22584397 + L2 LINE L2 2912 3272 0 22 56 0 0 chr21 22323380 22323416 -22584154 + AT_rich Low_complexity Low_complexity 1 36 0 352 375 65 15 chr21 22323435 22323635 -22583935 + L1ME LINE L1 5615 5824 -297 183 80 0 0 chr21 22324248 22324273 -22583297 + (T)n Simple_repeat Simple_repeat 1 25 0 305 279 29 19 chr21 22325464 22325568 -22582002 + MLT1I LTR MaLR 291 395 -14 317 312 134 6 chr21 22325618 22325775 -22581795 + MIR SINE MIR 77 253 -9 228 111 0 0 chr21 22325809 22325845 -22581725 + (CTA)n Simple_repeat Simple_repeat 1 36 0 244 315 0 0 chr21 22325881 22325954 -22581616 + MIR SINE MIR 59 131 -131 193 393 22 15 chr21 22326784 22326919 -22580651 + L2 LINE L2 2662 2797 -517 213 326 154 35 chr21 22326928 22327271 -22580299 + L2 LINE L2 1987 2370 -944 180 333 67 27 chr21 22327385 22327460 -22580110 - L3 LINE CR1 -9 1568 1491 540 195 42 6 chr21 22327833 22328053 -22579517 - MLT1D LTR MaLR 0 505 245 234 0 0 0 chr21 22328069 22328095 -22579475 + (TC)n Simple_repeat Simple_repeat 1 26 0 1541 169 11 3 chr21 22329161 22329445 -22578125 + MST-int LTR MaLR 195 480 -1171 * 11314 199 31 16 chr21 22329444 22332564 -22575006 - L1P LINE L1 -843 5303 2135 216 0 0 0 chr21 22332948 22332972 -22574598 + (A)n Simple_repeat Simple_repeat 1 24 0 1474 211 53 27 chr21 22333816 22334229 -22573341 + MLT2B2 LTR ERVL 1 477 -38 249 33 0 0 chr21 22334229 22334259 -22573311 + (TA)n Simple_repeat Simple_repeat 2 31 0 1474 211 53 27 chr21 22334259 22334290 -22573280 + MLT2B2 LTR ERVL 477 506 -9 21 36 0 0 chr21 22334564 22334592 -22572978 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr21 22335220 22335245 -22572325 + (TA)n Simple_repeat Simple_repeat 1 25 0 504 232 24 0 chr21 22336043 22336168 -22571402 + L1 LINE L1 4624 4751 -1395 1734 122 19 4 chr21 22336168 22336439 -22571131 + L1PA10 LINE L1 5877 6151 -17 209 128 0 26 chr21 22336441 22336480 -22571090 + (TA)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr21 22336481 22336513 -22571057 + AT_rich Low_complexity Low_complexity 1 32 0 944 172 20 25 chr21 22336639 22336837 -22570733 + L1PA16 LINE L1 5968 6164 -2 298 306 32 76 chr21 22338123 22338213 -22569357 + MIR3 SINE MIR 50 132 -76 2634 186 42 4 chr21 22338213 22338735 -22568835 - MER34 LTR ERV1 0 542 1 298 306 32 76 chr21 22338735 22338801 -22568769 + MIR3 SINE MIR 132 199 -9 583 296 36 39 chr21 22341829 22342315 -22565255 + MLT1H1 LTR MaLR 1 527 -28 523 139 0 0 chr21 22343283 22343369 -22564201 - MSTA LTR MaLR -342 86 1 1192 131 6 0 chr21 22344055 22344223 -22563347 - AluSg/x SINE Alu -22 288 120 398 20 20 0 chr21 22344735 22344786 -22562784 + (GA)n Simple_repeat Simple_repeat 1 52 0 4463 205 20 18 chr21 22344897 22345457 -22562113 + L1MA4 LINE L1 4446 5004 -1296 2458 40 0 17 chr21 22345457 22345757 -22561813 + AluY SINE Alu 1 295 -16 4463 205 20 18 chr21 22345757 22347033 -22560537 + L1MA4 LINE L1 5004 6285 -15 377 277 88 43 chr21 22347118 22347609 -22559961 + L1MEd LINE L1 903 1513 -977 220 221 23 81 chr21 22348560 22348646 -22558924 + MIR SINE MIR 117 197 -65 23 86 0 0 chr21 22349358 22349416 -22558154 + AT_rich Low_complexity Low_complexity 1 58 0 398 330 146 20 chr21 22350082 22350206 -22557364 - L2 LINE L2 -8 3305 3198 411 92 0 0 chr21 22350206 22350271 -22557299 + (TG)n Simple_repeat Simple_repeat 2 66 0 398 330 146 20 chr21 22350271 22350590 -22556980 - L2 LINE L2 -115 3198 2748 228 295 42 11 chr21 22350709 22350804 -22556766 - L3b LINE CR1 -207 1376 1279 313 287 43 61 chr21 22351284 22351399 -22556171 - L2 LINE L2 -5 3308 3196 1373 79 0 0 chr21 22352548 22352726 -22554844 - AluY SINE Alu -3 308 131 21 71 0 0 chr21 22352788 22352830 -22554740 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr21 22353651 22353696 -22553874 + AT_rich Low_complexity Low_complexity 1 45 0 1820 168 94 33 chr21 22353845 22354372 -22553198 + MLT2A2 LTR ERVL 1 554 0 2100 90 4 0 chr21 22356907 22357215 -22550355 - AluSg SINE Alu 0 309 1 2133 96 13 3 chr21 22357717 22358020 -22549550 + AluY SINE Alu 1 306 -5 22 35 0 0 chr21 22358390 22358419 -22549151 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr21 22359726 22359751 -22547819 + (TA)n Simple_repeat Simple_repeat 2 26 0 240 231 19 0 chr21 22359956 22360008 -22547562 - MER70B LTR ERVL -71 507 455 369 0 0 0 chr21 22360580 22360621 -22546949 + (CA)n Simple_repeat Simple_repeat 2 42 0 29 47 0 0 chr21 22361481 22361524 -22546046 + AT_rich Low_complexity Low_complexity 1 43 0 282 263 11 32 chr21 22361999 22362094 -22545476 - L2 LINE L2 -66 3247 3155 1721 212 37 40 chr21 22363646 22364127 -22543443 - L1 LINE L1 -2457 3689 3210 * 3807 185 24 12 chr21 22364124 22364881 -22542689 + L1PA16 LINE L1 5401 6166 0 6097 168 37 8 chr21 22365250 22366447 -22541123 - Tigger3b DNA MER2_type 0 1231 1 12146 165 41 38 chr21 22368840 22370918 -22536652 + Tigger1 DNA MER2_type 14 2083 -335 879 186 0 13 chr21 22370918 22371074 -22536496 + FRAM SINE Alu 2 155 -11 4876 139 44 15 chr21 22371084 22371547 -22536023 + L1PA16 LINE L1 5024 5472 -694 2420 87 0 0 chr21 22371547 22371858 -22535712 + AluY SINE Alu 1 311 0 4876 139 44 15 chr21 22371858 22372510 -22535060 + L1PA16 LINE L1 5472 6166 0 12146 165 41 38 chr21 22372510 22372816 -22534754 + Tigger1 DNA MER2_type 2091 2418 0 225 295 90 0 chr21 22372940 22373018 -22534552 + L2 LINE L2 3229 3313 0 765 276 14 19 chr21 22373194 22373408 -22534162 - MER20 DNA MER1_type 0 219 7 245 378 79 8 chr21 22373862 22373930 -22533640 + L2 LINE L2 3137 3199 -73 201 39 0 0 chr21 22373930 22373956 -22533614 + (TTG)n Simple_repeat Simple_repeat 2 27 0 245 378 79 8 chr21 22373956 22374014 -22533556 + L2 LINE L2 3199 3272 0 21 57 0 0 chr21 22374290 22374325 -22533245 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 22374730 22374758 -22532812 + AT_rich Low_complexity Low_complexity 1 28 0 270 321 36 29 chr21 22374910 22375050 -22532520 - MIR SINE MIR -53 209 69 30 93 0 0 chr21 22375295 22375381 -22532189 + AT_rich Low_complexity Low_complexity 1 86 0 30 0 0 0 chr21 22377059 22377089 -22530481 + AT_rich Low_complexity Low_complexity 1 30 0 927 98 0 15 chr21 22378692 22378825 -22528745 - AluSg SINE Alu -179 131 1 23 0 0 0 chr21 22378827 22378850 -22528720 + AT_rich Low_complexity Low_complexity 1 23 0 2453 151 56 2 chr21 22378850 22379328 -22528242 - L1MA6 LINE L1 -23 6277 5776 329 225 56 22 chr21 22379917 22380006 -22527564 - MER5A DNA MER1_type -90 99 8 324 0 0 0 chr21 22380733 22380769 -22526801 + (TG)n Simple_repeat Simple_repeat 2 37 0 333 131 0 0 chr21 22380818 22380879 -22526691 + (TA)n Simple_repeat Simple_repeat 2 62 0 1746 208 45 47 chr21 22382363 22382423 -22525147 - L1MB2 LINE L1 -8 6163 6104 1565 187 7 31 chr21 22382423 22382548 -22525022 + AluJo SINE Alu 1 127 -185 2088 130 0 0 chr21 22382548 22382841 -22524729 - AluSc SINE Alu -16 293 1 1565 187 7 31 chr21 22382841 22383009 -22524561 + AluJo SINE Alu 127 287 -25 1746 208 45 47 chr21 22383009 22383415 -22524155 - L1MB2 LINE L1 -67 6104 5698 892 177 0 0 chr21 22383854 22383995 -22523575 + MLT1A1 LTR MaLR 225 365 0 277 333 132 9 chr21 22384420 22384534 -22523036 + L2 LINE L2 3184 3311 -2 214 195 0 0 chr21 22385442 22385483 -22522087 + (TA)n Simple_repeat Simple_repeat 2 42 0 23 54 0 0 chr21 22385489 22385526 -22522044 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 22385961 22385991 -22521579 + AT_rich Low_complexity Low_complexity 1 30 0 190 348 114 19 chr21 22386088 22386246 -22521324 - MIR SINE MIR -87 175 3 644 238 29 0 chr21 22386362 22386534 -22521036 + L1M4 LINE L1 4808 4984 -1162 231 133 0 0 chr21 22386590 22386635 -22520935 + (TC)n Simple_repeat Simple_repeat 2 46 0 318 271 0 0 chr21 22387418 22387503 -22520067 + L1M4 LINE L1 4899 4983 -1163 260 246 0 0 chr21 22387540 22387609 -22519961 + CT-rich Low_complexity Low_complexity 2 70 0 222 37 0 0 chr21 22388958 22388985 -22518585 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 198 148 119 chr21 22389316 22389417 -22518153 - MLT1J2 LTR MaLR -68 382 279 263 384 40 0 chr21 22389665 22389790 -22517780 + MIR SINE MIR 75 204 -58 855 222 62 20 chr21 22390092 22390332 -22517238 - MER34 LTR ERV1 -1 638 318 707 251 21 5 chr21 22390392 22390579 -22516991 - MER34 LTR ERV1 -352 190 1 34 24 0 0 chr21 22390579 22390620 -22516950 + AT_rich Low_complexity Low_complexity 1 41 0 203 169 34 17 chr21 22391099 22391158 -22516412 + (TA)n Simple_repeat Simple_repeat 1 60 0 2095 67 0 0 chr21 22391421 22391675 -22515895 - AluSg SINE Alu -14 296 43 1983 164 57 40 chr21 22392610 22393031 -22514539 + MSTC LTR MaLR 1 428 0 185 324 106 29 chr21 22393601 22393771 -22513799 + L2 LINE L2 2589 2771 -543 1940 144 13 0 chr21 22393954 22394252 -22513318 - AluSq SINE Alu -11 302 1 2076 108 0 0 chr21 22395216 22395495 -22512075 + AluSc SINE Alu 5 283 -26 393 150 30 0 chr21 22395495 22395595 -22511975 + (TA)n Simple_repeat Simple_repeat 2 104 0 669 249 11 27 chr21 22396045 22396230 -22511340 + L1MC4 LINE L1 7496 7677 -365 215 225 28 14 chr21 22396454 22396525 -22511045 + (TA)n Simple_repeat Simple_repeat 1 72 0 1004 197 0 0 chr21 22396738 22396916 -22510654 + FRAM SINE Alu 1 175 -1 1646 204 3 9 chr21 22396931 22397269 -22510301 + MLT1A1 LTR MaLR 29 364 -1 5145 141 36 8 chr21 22397285 22398368 -22509202 - L1PA15 LINE L1 -9 6156 4877 2598 212 52 17 chr21 22398347 22398491 -22509079 - L1PA15 LINE L1 -1631 4515 4378 * 1772 118 0 8 chr21 22398491 22398745 -22508825 - AluSg SINE Alu -24 286 35 2598 212 52 17 chr21 22398745 22399252 -22508318 - L1PA15 LINE L1 -1768 4378 3841 357 306 196 21 chr21 22399279 22399570 -22508000 + MLT1H LTR MaLR 1 342 -207 484 365 43 41 chr21 22400224 22400529 -22507041 - L2 LINE L2 0 3313 3005 1664 178 30 17 chr21 22400529 22400827 -22506743 + AluJb SINE Alu 4 305 -7 484 365 43 41 chr21 22400827 22401009 -22506561 - L2 LINE L2 -308 3005 2825 2129 119 7 0 chr21 22401731 22402034 -22505536 - AluSp SINE Alu -8 305 1 21 0 0 0 chr21 22402044 22402065 -22505505 + AT_rich Low_complexity Low_complexity 1 21 0 200 286 0 0 chr21 22402280 22402322 -22505248 + L2 LINE L2 3241 3282 -31 257 282 13 26 chr21 22402390 22402468 -22505102 + LTR67 LTR ERVL 85 161 -396 208 233 0 0 chr21 22402707 22402750 -22504820 + CT-rich Low_complexity Low_complexity 2 44 0 287 294 119 17 chr21 22402827 22403004 -22504566 - L2 LINE L2 0 3313 3119 235 327 45 9 chr21 22403106 22403216 -22504354 + MER5A DNA MER1_type 1 114 -75 228 327 39 0 chr21 22403138 22403242 -22504328 - MER5A DNA MER1_type -22 167 60 * 183 100 0 0 chr21 22404617 22404647 -22502923 + (TA)n Simple_repeat Simple_repeat 2 31 0 617 47 0 23 chr21 22404794 22404880 -22502690 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 264 77 0 0 chr21 22404964 22405003 -22502567 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 992 213 79 79 chr21 22405401 22405782 -22501788 - MLT1D LTR MaLR -1 504 124 23 54 0 0 chr21 22406030 22406067 -22501503 + AT_rich Low_complexity Low_complexity 1 37 0 506 273 107 83 chr21 22406591 22406874 -22500696 + L2 LINE L2 2459 2753 -561 1496 145 109 62 chr21 22406874 22407232 -22500338 - THE1C LTR MaLR 0 375 1 506 273 107 83 chr21 22407232 22407285 -22500285 + L2 LINE L2 2753 2803 -511 2033 138 3 3 chr21 22408247 22408544 -22499026 - AluSq SINE Alu -16 297 1 24 32 0 0 chr21 22408591 22408622 -22498948 + AT_rich Low_complexity Low_complexity 1 31 0 623 207 87 33 chr21 22409639 22409858 -22497712 - MER31B LTR ERV1 -10 533 231 27 0 0 0 chr21 22409919 22409946 -22497624 + AT_rich Low_complexity Low_complexity 1 27 0 1103 23 0 0 chr21 22410821 22410950 -22496620 - L1PA5 LINE L1 -875 5271 5143 7171 31 3 0 chr21 22410950 22411818 -22495752 + L1PA5 LINE L1 5279 6151 -3 2017 52 19 71 chr21 22412426 22412734 -22494836 - L1PA7 LINE L1 0 6154 5863 2020 87 0 0 chr21 22412734 22412998 -22494572 + L1PA7 LINE L1 5601 5864 -290 30 0 0 0 chr21 22414696 22414726 -22492844 + AT_rich Low_complexity Low_complexity 1 30 0 636 253 137 28 chr21 22414860 22415145 -22492425 + MER5C DNA MER1_type 9 324 0 22 70 0 0 chr21 22415415 22415458 -22492112 + AT_rich Low_complexity Low_complexity 1 43 0 188 136 136 23 chr21 22415523 22415567 -22492003 - L2 LINE L2 -74 3239 3191 1232 177 0 74 chr21 22415941 22416184 -22491386 + MER34B LTR ERV1 1 225 -340 1406 209 35 56 chr21 22416184 22416557 -22491013 + MLT1A1 LTR MaLR 1 365 0 * 1509 182 41 0 chr21 22416557 22416843 -22490727 + MER34B LTR ERV1 221 518 -47 419 265 0 0 chr21 22416858 22416960 -22490610 + MLT1E2 LTR MaLR 523 624 -2 1474 194 17 0 chr21 22417118 22417406 -22490164 + AluJo SINE Alu 1 293 -19 1032 312 117 30 chr21 22418233 22418774 -22488796 - MLT1G1 LTR MaLR -2 593 6 449 278 42 37 chr21 22418954 22419299 -22488271 + MLT2C1 LTR ERVL 1 395 -2 2880 217 43 7 chr21 22419375 22419975 -22487595 + LTR48B LTR ERV1 1 622 -22 652 281 19 19 chr21 22419985 22420195 -22487375 + LTR48B-int LTR ERV1 1 210 -6121 661 299 28 20 chr21 22420204 22420458 -22487112 + LTR48B-int LTR ERV1 1034 1289 -5042 1307 81 0 11 chr21 22420574 22420759 -22486811 - L1PA13 LINE L1 -5 6158 5976 443 183 56 56 chr21 22420771 22420897 -22486673 + LTR48B-int LTR ERV1 1586 1711 -4620 3647 197 83 26 chr21 22420970 22421986 -22485584 + LTR48B-int LTR ERV1 4062 5135 -1196 1555 100 58 21 chr21 22421987 22422228 -22485342 - L1PA8A LINE L1 -2 6129 5880 2440 87 0 0 chr21 22422228 22422560 -22485010 + L1PA8A LINE L1 5356 5687 -444 2859 206 79 90 chr21 22422562 22423479 -22484091 + LTR48B-int LTR ERV1 5128 6033 -298 1944 72 0 0 chr21 22423479 22423716 -22483854 + AluSg/x SINE Alu 65 301 -11 2859 206 79 90 chr21 22423716 22423849 -22483721 + LTR48B-int LTR ERV1 6033 6166 -165 2898 195 55 7 chr21 22423952 22424566 -22483004 + LTR48B LTR ERV1 1 644 0 2103 139 0 7 chr21 22425901 22426211 -22481359 + AluSx SINE Alu 1 308 -4 2296 208 6 23 chr21 22426688 22427169 -22480401 + MER31A LTR ERV1 5 477 -8 183 80 0 0 chr21 22427707 22427732 -22479838 + (TC)n Simple_repeat Simple_repeat 2 26 0 1781 157 7 20 chr21 22427733 22428213 -22479357 - AluSx SINE Alu 0 476 1 34 24 0 0 chr21 22428248 22428289 -22479281 + AT_rich Low_complexity Low_complexity 1 41 0 697 133 62 8 chr21 22428968 22429096 -22478474 + MSTC LTR MaLR 1 135 -293 410 253 27 2 chr21 22429235 22429418 -22478152 - MER58A DNA MER1_type -5 219 3 25 65 0 0 chr21 22429537 22429583 -22477987 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr21 22429751 22429772 -22477798 + AT_rich Low_complexity Low_complexity 1 21 0 237 273 7 45 chr21 22430027 22430181 -22477389 + T-rich Low_complexity Low_complexity 2 149 0 1038 191 4 79 chr21 22430190 22430442 -22477128 - AluJo SINE Alu -63 249 17 22 35 0 0 chr21 22430750 22430779 -22476791 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 22430972 22431000 -22476570 + AT_rich Low_complexity Low_complexity 1 28 0 1797 157 41 59 chr21 22431110 22431498 -22476072 + MLT1B LTR MaLR 1 381 -9 488 333 45 91 chr21 22431573 22431834 -22475736 - L1MEd LINE L1 -4986 1133 862 1727 113 23 4 chr21 22431834 22432090 -22475480 - AluSx SINE Alu -4 308 48 488 333 45 91 chr21 22432090 22432609 -22474961 - L1MEd LINE L1 -5257 862 389 2064 148 0 0 chr21 22433454 22433764 -22473806 - AluSx SINE Alu 0 312 3 880 225 22 26 chr21 22434430 22434657 -22472913 + MLT2D LTR ERVL 1 226 -188 309 209 0 0 chr21 22434663 22434730 -22472840 + (CATA)n Simple_repeat Simple_repeat 4 70 0 258 237 0 43 chr21 22434733 22434826 -22472744 + L1MC4 LINE L1 6614 6702 -1340 241 242 0 53 chr21 22434799 22434894 -22472676 - L1MC4 LINE L1 -1339 6703 6614 * 225 253 0 32 chr21 22434827 22434922 -22472648 + L1MC4 LINE L1 6614 6705 -1337 * 231 235 12 47 chr21 22434957 22435042 -22472528 + L1MC4 LINE L1 6615 6696 -1346 240 71 24 0 chr21 22435042 22435074 -22472496 - MLT2B1 LTR ERVL -14 506 471 261 0 0 0 chr21 22435074 22435103 -22472467 + (CA)n Simple_repeat Simple_repeat 2 30 0 375 109 0 0 chr21 22435115 22435170 -22472400 + MLT2B1 LTR ERVL 466 520 0 256 381 74 17 chr21 22435783 22436014 -22471556 + MIR SINE MIR 18 261 -1 807 245 51 5 chr21 22437373 22437679 -22469891 + MLT1A1 LTR MaLR 1 365 0 345 24 0 0 chr21 22437951 22437993 -22469577 + (TG)n Simple_repeat Simple_repeat 2 43 0 284 339 31 53 chr21 22438219 22438446 -22469124 - L2 LINE L2 -895 2419 2198 184 387 0 42 chr21 22438612 22438754 -22468816 - L2 LINE L2 -1406 1908 1773 656 193 28 14 chr21 22438872 22439017 -22468553 + MLT1A1 LTR MaLR 1 147 -218 3402 160 125 31 chr21 22439064 22440386 -22467184 - pTR5 LTR ERV1 -143 2295 279 592 246 16 77 chr21 22440402 22440519 -22467051 + MLT1A1 LTR MaLR 225 329 -67 1993 85 4 0 chr21 22440519 22440789 -22466781 - AluY SINE Alu -2 309 39 592 246 16 77 chr21 22440789 22440854 -22466716 + MLT1A1 LTR MaLR 329 396 0 191 388 63 10 chr21 22441003 22441209 -22466361 - L2 LINE L2 -1838 1476 1260 5532 192 16 5 chr21 22442618 22443931 -22463639 + L1MC1 LINE L1 5005 6329 -4 4603 79 0 11 chr21 22443931 22444555 -22463015 + L1PA7 LINE L1 5527 6149 -5 501 229 24 0 chr21 22445740 22445906 -22461664 + GA-rich Low_complexity Low_complexity 3 172 0 310 268 43 72 chr21 22448376 22448514 -22459056 - L2 LINE L2 -1 3312 3179 374 395 0 13 chr21 22449044 22449201 -22458369 - L2 LINE L2 -565 2749 2595 2008 90 3 104 chr21 22449239 22449574 -22457996 + AluSp SINE Alu 5 305 -8 298 179 40 13 chr21 22449614 22449765 -22457805 + (TA)n Simple_repeat Simple_repeat 2 156 0 731 214 7 0 chr21 22450259 22450404 -22457166 + AluJb SINE Alu 137 282 -30 25 0 0 0 chr21 22450941 22450966 -22456604 + AT_rich Low_complexity Low_complexity 1 25 0 228 191 36 0 chr21 22451368 22451452 -22456118 + (TA)n Simple_repeat Simple_repeat 1 87 0 208 239 15 30 chr21 22453900 22453967 -22453603 + GA-rich Low_complexity Low_complexity 4 69 0 363 56 0 19 chr21 22455552 22455606 -22451964 - MADE1 DNA Mariner 0 80 28 199 300 50 0 chr21 22455839 22455919 -22451651 + L2 LINE L2 2282 2365 -949 185 395 37 0 chr21 22455938 22456019 -22451551 + L2 LINE L2 3144 3227 -45 180 398 0 0 chr21 22456058 22456166 -22451404 - L2 LINE L2 -1042 2272 2165 4286 180 40 34 chr21 22456910 22457900 -22449670 - L1MA9 LINE L1 0 6312 5317 843 204 13 4 chr21 22457906 22458126 -22449444 - L1MA6 LINE L1 -107 6193 5966 259 256 0 0 chr21 22458122 22458200 -22449370 - L1MA9 LINE L1 -825 5321 5244 * 5547 212 68 9 chr21 22458293 22459727 -22447843 - L1MA9 LINE L1 -886 5260 3743 952 243 81 58 chr21 22459821 22460312 -22447258 - LTR28 LTR ERV1 -11 495 1 1473 204 49 41 chr21 22460312 22460798 -22446772 - L1MA9 LINE L1 -2401 3745 3256 958 244 32 13 chr21 22460776 22461087 -22446483 - L1MA9 LINE L1 -3097 3049 2733 * 28 48 0 0 chr21 22461555 22461597 -22445973 + AT_rich Low_complexity Low_complexity 1 42 0 521 369 15 0 chr21 22461694 22461900 -22445670 - MER58A DNA MER1_type -15 209 1 285 312 65 41 chr21 22462265 22462435 -22445135 + L3b LINE CR1 1106 1279 -304 4697 242 38 38 chr21 22462692 22462799 -22444771 - L1MC3 LINE L1 -743 5683 5578 222 91 0 0 chr21 22462799 22462832 -22444738 + (CA)n Simple_repeat Simple_repeat 2 34 0 4697 242 38 38 chr21 22462832 22463861 -22443709 - L1MC3 LINE L1 -848 5578 5873 1281 246 40 55 chr21 22463861 22464263 -22443307 - MSTD LTR MaLR 0 396 1 4697 242 38 38 chr21 22464263 22465104 -22442466 - L1MC3 LINE L1 -552 5874 5035 1513 225 151 78 chr21 22465100 22466677 -22440893 - L1MC3 LINE L1 -3666 2760 886 * 281 87 0 22 chr21 22466677 22466723 -22440847 + (TA)n Simple_repeat Simple_repeat 1 45 0 1513 225 151 78 chr21 22466723 22467250 -22440320 - L1MC3 LINE L1 -5540 886 399 23 0 0 0 chr21 22467321 22467344 -22440226 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 22468092 22468126 -22439444 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr21 22468315 22468336 -22439234 + AT_rich Low_complexity Low_complexity 1 21 0 1165 74 0 0 chr21 22468775 22468924 -22438646 - AluY SINE Alu -13 298 150 2486 121 3 3 chr21 22469277 22469646 -22437924 - L1PA13 LINE L1 -387 5776 5405 2411 120 13 5 chr21 22469646 22470016 -22437554 + L1PA13 LINE L1 5787 6163 0 2486 121 3 3 chr21 22470016 22470027 -22437543 - L1P4 LINE L1 -757 5406 5396 614 308 14 58 chr21 22470028 22470304 -22437266 + L2 LINE L2 815 1078 -2236 306 243 49 129 chr21 22470402 22470665 -22436905 + L2 LINE L2 3072 3313 0 200 365 4 25 chr21 22472402 22472526 -22435044 - L2 LINE L2 -297 3016 2896 264 313 132 33 chr21 22472604 22472786 -22434784 - L2 LINE L2 -1174 2140 1941 24 0 0 0 chr21 22473628 22473652 -22433918 + AT_rich Low_complexity Low_complexity 1 24 0 1052 125 16 93 chr21 22474613 22474861 -22432709 - L1MA9 LINE L1 0 6312 6084 23 54 0 0 chr21 22475206 22475243 -22432327 + AT_rich Low_complexity Low_complexity 1 37 0 195 333 43 0 chr21 22475622 22475691 -22431879 - L3 LINE CR1 -1471 106 35 1833 145 7 0 chr21 22475715 22475998 -22431572 + AluSx SINE Alu 1 285 -27 704 161 23 0 chr21 22476027 22476157 -22431413 - AluJb SINE Alu -179 133 1 2024 126 3 0 chr21 22476860 22477170 -22430400 - AluSx SINE Alu -1 311 1 424 313 116 32 chr21 22477187 22477619 -22429951 - L1MEd LINE L1 -5233 886 405 2291 62 0 10 chr21 22477619 22477910 -22429660 - AluY SINE Alu -15 296 9 424 313 116 32 chr21 22477910 22477979 -22429591 - L1MEd LINE L1 -5714 405 343 2449 179 72 32 chr21 22478093 22478686 -22428884 + L1MB8 LINE L1 5561 6177 -1 328 103 15 15 chr21 22478835 22478903 -22428667 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 2414 57 10 0 chr21 22479252 22479552 -22428018 + AluY SINE Alu 1 303 -8 23 33 0 0 chr21 22479898 22479928 -22427642 + AT_rich Low_complexity Low_complexity 1 30 0 429 36 0 0 chr21 22481374 22481429 -22426141 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 71 0 0 chr21 22482210 22482252 -22425318 + AT_rich Low_complexity Low_complexity 1 42 0 1401 178 79 0 chr21 22482443 22482747 -22424823 - L1MA3 LINE L1 0 6305 5978 * 3234 143 128 22 chr21 22482740 22482968 -22424602 + L1MA3 LINE L1 5181 5383 -922 2396 66 0 17 chr21 22482968 22483270 -22424300 + AluY SINE Alu 1 297 -14 3234 143 128 22 chr21 22483270 22483750 -22423820 + L1MA3 LINE L1 5383 5954 -351 577 148 61 0 chr21 22483809 22483924 -22423646 - L1MA6 LINE L1 -17 6283 6162 2264 95 0 10 chr21 22483955 22484261 -22423309 + AluY SINE Alu 1 303 -8 25 51 0 0 chr21 22484316 22484355 -22423215 + AT_rich Low_complexity Low_complexity 1 39 0 2316 207 15 22 chr21 22485742 22486336 -22421234 + L1 LINE L1 4128 4717 -1429 * 3493 171 11 33 chr21 22486316 22486942 -22420628 + L1PA7 LINE L1 4492 5130 -1021 1929 163 0 3 chr21 22486942 22487242 -22420328 + AluSx SINE Alu 1 299 -13 3493 171 11 33 chr21 22487242 22487468 -22420102 + L1PA7 LINE L1 5130 5359 -792 6307 73 12 31 chr21 22487468 22488677 -22418893 + L1PA7 LINE L1 4955 6149 -5 3493 171 11 33 chr21 22488677 22489140 -22418430 + L1PA7 LINE L1 5359 5785 -366 270 0 0 0 chr21 22489141 22489171 -22418399 + (TG)n Simple_repeat Simple_repeat 2 31 0 2570 157 15 0 chr21 22489529 22489995 -22417575 - L1MA5A LINE L1 -6 6291 5819 23 0 0 0 chr21 22489995 22490018 -22417552 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr21 22490098 22490140 -22417430 + AT_rich Low_complexity Low_complexity 1 42 0 1665 260 96 81 chr21 22490220 22491774 -22415796 - L1ME2 LINE L1 -62 6171 4590 5428 135 38 2 chr21 22491811 22492964 -22414606 - L1PA14 LINE L1 -3 6158 4964 408 130 0 0 chr21 22493024 22493093 -22414477 - L1PA14 LINE L1 -3721 2425 2357 746 315 106 23 chr21 22493126 22493527 -22414043 - L1ME2 LINE L1 -1891 4324 3958 207 0 0 0 chr21 22493527 22493550 -22414020 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 746 315 106 23 chr21 22493550 22493849 -22413721 - L1ME2 LINE L1 -2257 3958 3566 338 339 116 26 chr21 22494149 22494459 -22413111 - L1ME2 LINE L1 -6024 372 35 519 272 51 31 chr21 22494852 22495047 -22412523 + MER3 DNA MER1_type 9 207 -2 330 263 0 0 chr21 22495047 22495088 -22412482 - MER3 DNA MER1_type -160 49 9 1788 163 0 0 chr21 22495700 22495982 -22411588 - AluSx SINE Alu -21 291 10 24 32 0 0 chr21 22496077 22496108 -22411462 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr21 22496344 22496368 -22411202 + AT_rich Low_complexity Low_complexity 1 24 0 245 256 96 40 chr21 22496980 22497105 -22410465 + L2 LINE L2 3180 3311 -2 35 78 0 0 chr21 22497624 22497701 -22409869 + AT_rich Low_complexity Low_complexity 1 77 0 216 121 0 52 chr21 22497728 22497786 -22409784 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 2357 83 3 0 chr21 22497964 22498266 -22409304 + AluSp SINE Alu 1 303 -10 3179 158 15 15 chr21 22498362 22498946 -22408624 - L1MC1 LINE L1 -10 6323 5740 222 118 0 0 chr21 22499083 22499117 -22408453 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr21 22499898 22499926 -22407644 + AT_rich Low_complexity Low_complexity 1 28 0 254 227 67 0 chr21 22501699 22501774 -22405796 + MIR SINE MIR 119 198 -64 1325 298 70 28 chr21 22501826 22502588 -22404982 + L2 LINE L2 2348 3148 -165 232 172 0 52 chr21 22502595 22502653 -22404917 - MLT2C1 LTR ERVL -8 456 402 250 123 35 0 chr21 22502653 22502710 -22404860 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1269 202 56 65 chr21 22502736 22503077 -22404493 - MLT2C1 LTR ERVL -56 341 4 408 253 70 70 chr21 22503079 22503237 -22404333 + L2 LINE L2 3146 3303 -10 180 77 0 0 chr21 22503529 22503555 -22404015 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 1361 228 72 99 chr21 22503603 22504320 -22403250 + LTR19C LTR ERV1 9 779 0 2415 74 0 0 chr21 22504494 22504792 -22402778 + AluSg SINE Alu 1 298 -12 23 68 0 0 chr21 22504882 22504926 -22402644 + AT_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr21 22505783 22505804 -22401766 + (TC)n Simple_repeat Simple_repeat 2 22 0 1544 193 0 46 chr21 22505807 22506134 -22401436 - AluJb SINE Alu 0 312 1 306 311 50 25 chr21 22508277 22508396 -22399174 - MER5A DNA MER1_type -57 132 11 467 161 24 8 chr21 22508447 22508571 -22398999 + CT-rich Low_complexity Low_complexity 4 129 0 24 67 0 0 chr21 22509020 22509065 -22398505 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr21 22509253 22509284 -22398286 + AT_rich Low_complexity Low_complexity 1 31 0 192 358 100 22 chr21 22510628 22510683 -22396887 + L2 LINE L2 2336 2385 -929 2860 111 37 0 chr21 22510683 22511115 -22396455 - L1PA11 LINE L1 -1 6173 5726 192 358 100 22 chr21 22511115 22511288 -22396282 + L2 LINE L2 2385 2582 -732 258 81 0 0 chr21 22511845 22511882 -22395688 + (TA)n Simple_repeat Simple_repeat 2 38 0 2307 81 0 7 chr21 22512423 22512721 -22394849 + AluY SINE Alu 1 296 -15 1023 322 119 4 chr21 22513018 22513524 -22394046 + L2 LINE L2 2267 2830 -484 861 207 47 140 chr21 22513605 22514006 -22393564 - MER63B DNA MER1_type -35 401 38 287 299 138 75 chr21 22514059 22514407 -22393163 + L2 LINE L2 2936 3305 -8 22 70 0 0 chr21 22514554 22514597 -22392973 + AT_rich Low_complexity Low_complexity 1 43 0 356 294 61 56 chr21 22514738 22514952 -22392618 + L1M4 LINE L1 3115 3329 -2817 1769 156 57 33 chr21 22515087 22515453 -22392117 + THE1C LTR MaLR 1 375 0 1593 220 22 30 chr21 22515729 22516043 -22391527 - MER89 LTR ERV1 0 559 150 2081 134 0 0 chr21 22516043 22516349 -22391221 + AluSp SINE Alu 1 306 -7 1593 220 22 30 chr21 22516349 22516470 -22391100 - MER89 LTR ERV1 -409 150 29 34 65 0 0 chr21 22516498 22516560 -22391010 + AT_rich Low_complexity Low_complexity 1 62 0 473 227 0 0 chr21 22516565 22516662 -22390908 - FLAM_C SINE Alu -40 103 7 429 217 28 19 chr21 22516806 22516912 -22390658 + LTR37A LTR ERV1 1 107 -319 385 134 73 49 chr21 22516908 22516990 -22390580 + LTR37A LTR ERV1 29 112 -314 * 550 176 38 38 chr21 22516988 22517147 -22390423 + LTR37A LTR ERV1 268 426 0 1335 256 32 5 chr21 22517947 22518264 -22389306 - MLT1A1 LTR MaLR -2 363 37 1060 149 0 0 chr21 22518265 22518446 -22389124 - L1MA3 LINE L1 0 6305 6125 384 152 38 0 chr21 22518446 22518525 -22389045 + L1MA3 LINE L1 6045 6126 -179 * 3136 29 0 3 chr21 22518513 22518897 -22388673 - L1P LINE L1 -2129 4017 3635 234 0 0 0 chr21 22518905 22518931 -22388639 + (TAA)n Simple_repeat Simple_repeat 3 28 0 264 167 0 0 chr21 22519006 22519048 -22388522 - MLT1A1 LTR MaLR -328 46 5 1501 221 16 32 chr21 22519897 22520273 -22387297 - MLT1A2 LTR MaLR -4 370 1 33 25 0 0 chr21 22521167 22521207 -22386363 + AT_rich Low_complexity Low_complexity 1 40 0 321 189 38 57 chr21 22521543 22521649 -22385921 - LTR52 LTR ERVL -307 114 11 1170 199 63 35 chr21 22521651 22521937 -22385633 - L1PA16 LINE L1 -4 6162 5869 255 338 55 7 chr21 22521936 22522081 -22385489 + L1ME LINE L1 5562 5713 -408 * 29 70 0 0 chr21 22522112 22522169 -22385401 + AT_rich Low_complexity Low_complexity 1 57 0 27 49 0 0 chr21 22522413 22522454 -22385116 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr21 22522467 22522489 -22385081 + AT_rich Low_complexity Low_complexity 1 22 0 201 365 8 0 chr21 22523237 22523326 -22384244 + MIR SINE MIR 89 147 -61 374 313 0 0 chr21 22523417 22523513 -22384057 - L2 LINE L2 -1 3312 3217 243 243 14 40 chr21 22524115 22524189 -22383381 + Charlie8 DNA MER1_type 107 178 -2239 248 130 43 29 chr21 22524456 22524525 -22383045 + (TA)n Simple_repeat Simple_repeat 1 70 0 339 310 79 32 chr21 22524646 22524862 -22382708 - L2 LINE L2 -74 3239 3014 1668 230 130 37 chr21 22524864 22525425 -22382145 + LTR68 LTR ERV1 1 613 -127 233 167 24 0 chr21 22525470 22525512 -22382058 + LTR68 LTR ERV1 698 740 0 2200 176 15 95 chr21 22525589 22525645 -22381925 - MER66-int LTR ERV1 -4187 2489 2430 2204 153 55 5 chr21 22525645 22526049 -22381521 - MSTA LTR MaLR 0 428 5 2200 176 15 95 chr21 22526049 22526189 -22381381 - MER66-int LTR ERV1 -4246 2430 2280 2130 105 7 7 chr21 22526189 22526485 -22381085 + AluSc SINE Alu 1 296 -13 2200 176 15 95 chr21 22526485 22526815 -22380755 - MER66-int LTR ERV1 -4396 2280 2004 1185 226 42 40 chr21 22526842 22527207 -22380363 - MER66A LTR ERV1 -19 520 169 2001 135 26 7 chr21 22527297 22527601 -22379969 - AluSx SINE Alu -2 310 1 326 197 26 0 chr21 22527654 22527730 -22379840 + MER67D LTR ERV1 432 509 -5 189 256 8 128 chr21 22528081 22528148 -22379422 - MIR SINE MIR -56 206 157 1380 61 0 6 chr21 22528148 22528329 -22379241 - L1PA7 LINE L1 0 6154 5975 189 256 8 128 chr21 22528329 22528378 -22379192 - MIR SINE MIR -105 157 104 21 0 0 0 chr21 22528995 22529016 -22378554 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 22529495 22529528 -22378042 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chr21 22530324 22530367 -22377203 + AT_rich Low_complexity Low_complexity 1 43 0 671 295 24 9 chr21 22530399 22530609 -22376961 + MER20 DNA MER1_type 7 219 0 207 196 72 0 chr21 22530609 22530706 -22376864 + (TA)n Simple_repeat Simple_repeat 2 105 0 277 280 93 0 chr21 22532434 22532584 -22374986 - L1ME3A LINE L1 -214 5956 5793 454 281 121 26 chr21 22532607 22532982 -22374588 - L1ME3A LINE L1 -455 5707 5293 2493 240 53 10 chr21 22533178 22533802 -22373768 - MER82 DNA MER2_type -1 652 2 351 44 0 0 chr21 22533836 22533881 -22373689 + (TG)n Simple_repeat Simple_repeat 2 46 0 38 39 0 0 chr21 22535442 22535494 -22372076 + AT_rich Low_complexity Low_complexity 1 52 0 1835 194 8 11 chr21 22535662 22536028 -22371542 - MLT1A1 LTR MaLR 0 365 1 571 182 0 0 chr21 22536850 22536949 -22370621 - MLT1A1 LTR MaLR 0 365 267 21 0 0 0 chr21 22537684 22537705 -22369865 + AT_rich Low_complexity Low_complexity 1 21 0 289 154 13 13 chr21 22538499 22538577 -22368993 + GA-rich Low_complexity Low_complexity 1 78 0 240 35 0 0 chr21 22538700 22538729 -22368841 + (T)n Simple_repeat Simple_repeat 1 29 0 1985 206 19 21 chr21 22538900 22539333 -22368237 - MSTB1 LTR MaLR 0 432 1 6976 229 47 4 chr21 22539334 22540917 -22366653 - MSTB1-int LTR MaLR 0 1651 1 2225 177 24 5 chr21 22540917 22541341 -22366229 - MSTB1 LTR MaLR 0 432 1 1394 62 0 20 chr21 22541366 22541561 -22366009 - AluY SINE Alu -11 300 110 919 62 0 0 chr21 22541571 22541683 -22365887 - AluY SINE Alu -179 132 21 21 36 0 0 chr21 22542481 22542509 -22365061 + AT_rich Low_complexity Low_complexity 1 28 0 1614 192 3 23 chr21 22543203 22543511 -22364059 + AluJo SINE Alu 1 302 -10 22 0 0 0 chr21 22544134 22544156 -22363414 + AT_rich Low_complexity Low_complexity 1 22 0 3621 215 30 31 chr21 22544498 22545330 -22362240 + L1MC2 LINE L1 4143 4975 -1358 324 0 0 0 chr21 22545330 22545366 -22362204 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3621 215 30 31 chr21 22545366 22546224 -22361346 + L1MC2 LINE L1 4975 5831 -502 2324 80 0 7 chr21 22546224 22546525 -22361045 + AluY SINE Alu 1 299 -12 657 203 51 11 chr21 22546551 22546728 -22360842 + L1MC2 LINE L1 6146 6329 -15 204 179 0 0 chr21 22546740 22546779 -22360791 + A-rich Low_complexity Low_complexity 1 39 0 290 326 35 47 chr21 22546994 22547166 -22360404 + L1MCc LINE L1 259 428 -5995 843 84 0 8 chr21 22547258 22547377 -22360193 - AluSp/q SINE Alu -8 305 188 216 0 0 0 chr21 22547470 22547494 -22360076 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 277 349 0 0 chr21 22547556 22547642 -22359928 + L1MCc LINE L1 824 909 -5514 1832 234 29 11 chr21 22548365 22548809 -22358761 - MER66A LTR ERV1 0 478 27 23 33 0 0 chr21 22548915 22548945 -22358625 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr21 22549190 22549224 -22358346 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr21 22549889 22549918 -22357652 + AT_rich Low_complexity Low_complexity 1 29 0 1454 208 48 22 chr21 22550059 22550415 -22357155 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr21 22550624 22550655 -22356915 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 22551586 22551609 -22355961 + AT_rich Low_complexity Low_complexity 1 23 0 791 279 117 24 chr21 22551645 22551978 -22355592 + MLT1A2 LTR MaLR 1 364 -10 21 36 0 0 chr21 22552720 22552748 -22354822 + AT_rich Low_complexity Low_complexity 1 28 0 726 171 89 13 chr21 22553670 22553828 -22353742 - MER20 DNA MER1_type -4 215 46 305 196 0 0 chr21 22554280 22554331 -22353239 + MER72 LTR ERV1 329 379 -343 228 122 0 0 chr21 22554414 22554455 -22353115 + (CA)n Simple_repeat Simple_repeat 1 41 0 274 354 9 9 chr21 22554925 22555038 -22352532 - MLT2E LTR ERVL -469 159 47 664 322 96 15 chr21 22555385 22555655 -22351915 - LTR16C LTR ERVL -29 462 171 517 325 20 20 chr21 22556023 22556223 -22351347 - HERVL LTR ERVL -1346 4308 4109 501 232 60 4 chr21 22556242 22556396 -22351174 - L1MEc LINE L1 -4593 1932 1692 306 0 0 0 chr21 22556396 22556430 -22351140 + (TA)n Simple_repeat Simple_repeat 2 35 0 2128 125 3 3 chr21 22556430 22556734 -22350836 - AluSg SINE Alu -6 304 1 1640 178 0 0 chr21 22556735 22557011 -22350559 + Tigger3(Golem) DNA MER2_type 2763 3038 0 22 56 0 0 chr21 22557148 22557184 -22350386 + AT_rich Low_complexity Low_complexity 1 36 0 213 121 0 0 chr21 22557899 22557932 -22349638 + (CA)n Simple_repeat Simple_repeat 1 33 0 3888 152 25 6 chr21 22558236 22558953 -22348617 - L1MA4 LINE L1 -6 6294 5564 390 239 92 28 chr21 22558986 22559095 -22348475 + FLAM_A SINE Alu 1 116 -17 7229 35 9 0 chr21 22559123 22560283 -22347287 - L1PA5 LINE L1 -4 6150 4980 1698 94 0 55 chr21 22562944 22563198 -22344372 + AluSg SINE Alu 50 289 -21 2195 96 0 20 chr21 22564645 22564946 -22342624 + AluY SINE Alu 1 295 -16 278 167 0 30 chr21 22565630 22565696 -22341874 + GA-rich Low_complexity Low_complexity 2 65 0 235 316 26 34 chr21 22565744 22565861 -22341709 + L1ME LINE L1 5544 5659 -511 431 329 99 46 chr21 22565889 22566043 -22341527 - L2 LINE L2 -5 3308 3164 2166 99 3 0 chr21 22566043 22566327 -22341243 + AluSg SINE Alu 3 287 -23 431 329 99 46 chr21 22566327 22566567 -22341003 - L2 LINE L2 -149 3164 2893 6101 31 6 0 chr21 22566681 22567413 -22340157 - L1PA4 LINE L1 -1 6154 5419 870 273 43 67 chr21 22567430 22567848 -22339722 + LTR52 LTR ERVL 13 420 -1 2434 240 37 34 chr21 22567848 22567952 -22339618 + LTR52-int LTR ERVL 3 105 -3451 2119 121 0 0 chr21 22567952 22568249 -22339321 - AluSx SINE Alu -12 300 4 2434 240 37 34 chr21 22568249 22568499 -22339071 + LTR52-int LTR ERVL 105 353 -3203 1731 213 6 8 chr21 22568499 22568865 -22338705 - MLT1A1 LTR MaLR 0 365 1 2434 240 37 34 chr21 22568865 22569179 -22338391 + LTR52-int LTR ERVL 353 674 -2882 1883 206 47 66 chr21 22569187 22569822 -22337748 + LTR52-int LTR ERVL 792 1414 -2142 2590 249 60 21 chr21 22569868 22570677 -22336893 + LTR52-int LTR ERVL 1481 3474 -82 969 259 42 24 chr21 22570708 22570997 -22336573 + LTR52 LTR ERVL 49 342 -79 24 67 0 0 chr21 22570997 22571042 -22336528 + AT_rich Low_complexity Low_complexity 1 45 0 264 305 45 32 chr21 22571677 22571831 -22335739 + MIR SINE MIR 99 254 -8 1111 134 5 30 chr21 22572563 22572764 -22334806 + L1PA14 LINE L1 5965 6160 -1 1545 189 33 13 chr21 22572924 22573225 -22334345 - MER1B DNA MER1_type 0 339 33 372 72 43 0 chr21 22573434 22573503 -22334067 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 309 89 0 0 chr21 22575146 22575191 -22332379 + (TG)n Simple_repeat Simple_repeat 2 46 0 10779 218 37 31 chr21 22575191 22578430 -22329140 - L1MB1 LINE L1 -33 7575 4319 1714 107 0 93 chr21 22578430 22578730 -22328840 - AluY SINE Alu -39 272 1 10779 218 37 31 chr21 22578730 22579490 -22328080 - L1MB1 LINE L1 -3289 4319 3565 3171 136 24 10 chr21 22579490 22579728 -22327842 + MER75 DNA T2_type 1 234 -280 2276 151 5 27 chr21 22579728 22580103 -22327467 - MER57A LTR ERV1 0 403 36 1937 112 42 0 chr21 22580103 22580389 -22327181 + AluY SINE Alu 1 298 -13 2276 151 5 27 chr21 22580389 22580425 -22327145 - MER57A LTR ERV1 -367 36 1 3171 136 24 10 chr21 22580425 22580693 -22326877 + MER75 DNA T2_type 234 514 0 387 201 60 20 chr21 22580702 22580851 -22326719 - L1MB1 LINE L1 -4013 3552 3398 197 347 0 14 chr21 22581044 22581116 -22326454 - MIR SINE MIR -124 138 68 2376 216 45 6 chr21 22581206 22581734 -22325836 - MER44D DNA MER2_type 0 605 2 1676 178 40 11 chr21 22582587 22582936 -22324634 - THE1C LTR MaLR 0 375 17 26 50 0 0 chr21 22583018 22583058 -22324512 + AT_rich Low_complexity Low_complexity 1 40 0 32 94 0 20 chr21 22583355 22583504 -22324066 + AT_rich Low_complexity Low_complexity 1 146 0 3236 158 28 30 chr21 22583518 22584124 -22323446 - MER6A DNA MER2_type 0 605 1 22 0 0 0 chr21 22584160 22584182 -22323388 + AT_rich Low_complexity Low_complexity 1 22 0 323 233 44 33 chr21 22584367 22584457 -22323113 + L2 LINE L2 3223 3313 0 1826 149 0 0 chr21 22584743 22585071 -22322499 + AluJb SINE Alu 5 332 0 32 0 0 0 chr21 22585898 22585930 -22321640 + AT_rich Low_complexity Low_complexity 1 32 0 5473 123 21 13 chr21 22587108 22588735 -22318835 - L1PA14 LINE L1 0 6161 4501 934 213 25 0 chr21 22588777 22588974 -22318596 - L1MC1 LINE L1 -25 6308 6107 306 216 0 0 chr21 22588976 22589050 -22318520 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 353 297 20 34 chr21 22589574 22589722 -22317848 + MIR SINE MIR 51 196 -66 22 0 0 0 chr21 22590630 22590652 -22316918 + AT_rich Low_complexity Low_complexity 1 22 0 33 66 0 0 chr21 22591614 22591675 -22315895 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr21 22591881 22591912 -22315658 + AT_rich Low_complexity Low_complexity 1 31 0 4916 143 6 40 chr21 22592100 22592964 -22314606 - L1PA15 LINE L1 -21 6144 5311 26 0 0 0 chr21 22593566 22593592 -22313978 + AT_rich Low_complexity Low_complexity 1 26 0 251 340 57 47 chr21 22593817 22594029 -22313541 - L2 LINE L2 -275 3038 2825 370 260 81 70 chr21 22594174 22594432 -22313138 - L2 LINE L2 -58 3255 2995 195 325 8 40 chr21 22594399 22594525 -22313045 - L2 LINE L2 -453 2861 2740 * 247 320 99 59 chr21 22594566 22594684 -22312886 - L2 LINE L2 -827 2487 2375 2018 140 0 3 chr21 22594684 22594984 -22312586 - AluSx SINE Alu -11 301 3 247 320 99 59 chr21 22594984 22595137 -22312433 - L2 LINE L2 -939 2375 2205 914 251 110 19 chr21 22595208 22595527 -22312043 - L1ME3A LINE L1 0 6170 5823 204 125 0 0 chr21 22595808 22595840 -22311730 + (TATG)n Simple_repeat Simple_repeat 3 34 0 22 35 0 0 chr21 22596352 22596381 -22311189 + AT_rich Low_complexity Low_complexity 1 29 0 216 200 0 0 chr21 22596708 22596748 -22310822 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 2437 66 0 25 chr21 22597977 22598296 -22309274 + AluY SINE Alu 1 311 0 21 36 0 0 chr21 22598651 22598679 -22308891 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr21 22599500 22599552 -22308018 + AT_rich Low_complexity Low_complexity 1 52 0 37 52 0 0 chr21 22599598 22599656 -22307914 + AT_rich Low_complexity Low_complexity 1 58 0 694 212 0 0 chr21 22599708 22599845 -22307725 - MSTC LTR MaLR 0 428 292 3052 105 26 0 chr21 22601274 22601703 -22305867 + MLT2A2 LTR ERVL 1 440 -13 1732 200 0 0 chr21 22602352 22602647 -22304923 + AluJo SINE Alu 7 301 -11 3090 196 50 27 chr21 22603399 22604103 -22303467 + L1MB1 LINE L1 5424 6143 -25 1309 212 16 58 chr21 22604109 22604420 -22303150 - AluJo SINE Alu -14 298 1 9728 132 67 9 chr21 22604605 22607021 -22300549 - L1PBa LINE L1 -3535 3327 620 988 185 26 0 chr21 22607000 22607195 -22300375 - L1PBa LINE L1 -6663 200 1 * 32 67 0 0 chr21 22607887 22607947 -22299623 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr21 22608641 22608669 -22298901 + AT_rich Low_complexity Low_complexity 1 28 0 2782 195 92 18 chr21 22609156 22609819 -22297751 + L1MB3 LINE L1 5445 6156 -27 2092 81 4 4 chr21 22610011 22610283 -22297287 + AluSc SINE Alu 1 272 -37 2233 64 10 30 chr21 22610285 22610580 -22296990 + AluSp SINE Alu 13 301 -12 207 0 0 0 chr21 22610823 22610846 -22296724 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6749 66 0 9 chr21 22610847 22611741 -22295829 - L1PA8 LINE L1 -17 6155 5270 459 280 64 19 chr21 22611724 22612085 -22295485 - L1MDa LINE L1 -2877 3663 3287 * 1035 267 103 19 chr21 22612153 22612949 -22294621 - L1MDa LINE L1 -3376 3164 2332 1894 161 3 0 chr21 22613480 22613791 -22293779 + AluSq SINE Alu 1 312 -1 45 34 0 0 chr21 22614008 22614067 -22293503 + AT_rich Low_complexity Low_complexity 1 59 0 2631 107 0 3 chr21 22614139 22614504 -22293066 - THE1B LTR MaLR 0 364 1 780 119 0 0 chr21 22614504 22614622 -22292948 - THE1B-int LTR MaLR 0 1580 1463 235 242 0 53 chr21 22614699 22614794 -22292776 + L1MC4 LINE L1 6614 6703 -1339 274 275 75 26 chr21 22614915 22615076 -22292494 - L1MDa LINE L1 -917 1984 1788 1196 237 33 19 chr21 22615145 22615504 -22292066 - MLT1A1 LTR MaLR -1 364 1 1742 240 62 32 chr21 22615923 22616401 -22291169 + MLT2B1 LTR ERVL 1 427 -26 2681 226 46 8 chr21 22616423 22617052 -22290518 + MLT-int LTR MaLR 5 657 -1078 299 169 31 31 chr21 22617195 22617260 -22290310 + MLT-int LTR MaLR 677 741 -994 1579 144 63 18 chr21 22617288 22617572 -22289998 - MSTA LTR MaLR -131 297 1 311 292 56 0 chr21 22617745 22617834 -22289736 - MLT1H1 LTR MaLR 0 555 462 270 321 102 33 chr21 22618006 22618221 -22289349 - MLT1H LTR MaLR -276 319 89 811 130 0 0 chr21 22618267 22618398 -22289172 - L1PA13 LINE L1 -1 6162 6032 366 23 0 0 chr21 22618613 22618656 -22288914 + (TG)n Simple_repeat Simple_repeat 2 44 0 23 86 0 0 chr21 22618685 22618743 -22288827 + AT_rich Low_complexity Low_complexity 1 58 0 727 256 66 25 chr21 22619670 22619812 -22287758 + Charlie4a DNA MER1_type 15 150 -1811 1764 191 14 17 chr21 22619812 22620174 -22287396 - MER46B DNA MER2_type 0 236 1 727 256 66 25 chr21 22620174 22620348 -22287222 + Charlie4a DNA MER1_type 150 344 -164 429 343 45 30 chr21 22620829 22621097 -22286473 + L2 LINE L2 2544 2815 -499 965 275 136 7 chr21 22621116 22621418 -22286152 - MLT1E2 LTR MaLR -99 527 187 307 216 72 10 chr21 22621509 22621606 -22285964 - MLT1E2 LTR MaLR -458 196 94 1281 323 81 15 chr21 22621693 22622238 -22285332 - MLT1E LTR MaLR 0 593 13 217 115 82 0 chr21 22622735 22622796 -22284774 + (TA)n Simple_repeat Simple_repeat 2 67 0 25 31 0 0 chr21 22622811 22622843 -22284727 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr21 22622866 22622902 -22284668 + AT_rich Low_complexity Low_complexity 1 36 0 230 140 35 41 chr21 22622908 22623395 -22284175 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 353 57 95 25 chr21 22623046 22623062 -22284508 + (TA)n Simple_repeat Simple_repeat 2 15 -155 2884 6 0 0 chr21 22623062 22623379 -22284191 - AluYb8 SINE Alu -1 317 1 353 57 95 25 chr21 22623379 22623520 -22284050 + (TA)n Simple_repeat Simple_repeat 15 170 0 25 31 0 0 chr21 22623558 22623590 -22283980 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr21 22623784 22623806 -22283764 + AT_rich Low_complexity Low_complexity 1 22 0 689 269 38 94 chr21 22624690 22625084 -22282486 - MLT1A2 LTR MaLR 0 374 3 226 222 0 0 chr21 22625163 22625208 -22282362 + MER5A DNA MER1_type 10 54 -135 23 0 0 0 chr21 22626054 22626077 -22281493 + AT_rich Low_complexity Low_complexity 1 23 0 285 258 106 30 chr21 22626189 22626321 -22281249 - L2 LINE L2 -1 3312 3171 195 307 147 40 chr21 22626577 22626652 -22280918 - MER5A DNA MER1_type -78 111 29 21 57 0 0 chr21 22627552 22627587 -22279983 + AT_rich Low_complexity Low_complexity 1 35 0 235 27 270 0 chr21 22627621 22627658 -22279912 - L1M1 LINE L1 -390 5912 5866 1226 311 68 41 chr21 22628349 22629400 -22278170 + L1MC3 LINE L1 275 1257 -4862 393 326 8 0 chr21 22629756 22629888 -22277682 - MIR SINE MIR -19 243 111 1307 231 107 5 chr21 22630724 22631126 -22276444 + LTR47B LTR ERVL 1 443 0 22 35 0 0 chr21 22631237 22631266 -22276304 + AT_rich Low_complexity Low_complexity 1 29 0 1208 284 124 7 chr21 22631637 22632383 -22275187 + L1MC3 LINE L1 3365 4232 -1897 1210 226 103 31 chr21 22632448 22632861 -22274709 + MLT1C LTR MaLR 1 461 -6 2371 62 0 16 chr21 22632896 22633203 -22274367 + AluY SINE Alu 1 302 -9 2518 236 51 32 chr21 22633232 22633986 -22273584 + L1MC3 LINE L1 4402 5177 -952 664 241 0 0 chr21 22633986 22634119 -22273451 + FLAM_A SINE Alu 1 133 0 2518 236 51 32 chr21 22634119 22634261 -22273309 + L1MC3 LINE L1 5177 5315 -814 546 143 0 33 chr21 22634262 22634353 -22273217 + L1MC1 LINE L1 6223 6310 -23 8371 189 77 73 chr21 22634356 22635936 -22271634 + L1MC3 LINE L1 5296 6868 -900 252 77 0 0 chr21 22635936 22635975 -22271595 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8371 189 77 73 chr21 22635975 22636166 -22271404 + L1MC3 LINE L1 6868 7057 -711 418 229 0 48 chr21 22636166 22636271 -22271299 + MLT1F1 LTR MaLR 25 124 -443 8371 189 77 73 chr21 22636271 22636837 -22270733 + L1MC3 LINE L1 7057 7748 -20 264 77 0 0 chr21 22637796 22637835 -22269735 + (TG)n Simple_repeat Simple_repeat 1 39 0 26 50 0 0 chr21 22637896 22637936 -22269634 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr21 22638194 22638223 -22269347 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 22639010 22639033 -22268537 + AT_rich Low_complexity Low_complexity 1 23 0 682 299 131 57 chr21 22639678 22639883 -22267687 + MLT1E1 LTR MaLR 19 207 -447 1427 214 3 10 chr21 22639883 22640172 -22267398 + AluJb SINE Alu 1 287 -25 682 299 131 57 chr21 22640172 22640455 -22267115 + MLT1E1 LTR MaLR 207 543 -111 3482 125 0 4 chr21 22641745 22642250 -22265320 - MER9 LTR ERVK -8 503 1 196 197 16 16 chr21 22643568 22643629 -22263941 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1816 128 51 65 chr21 22643634 22643987 -22263583 + THE1C LTR MaLR 28 375 0 354 123 0 0 chr21 22643989 22644046 -22263524 + (TA)n Simple_repeat Simple_repeat 1 57 0 229 275 50 38 chr21 22644536 22644616 -22262954 + L2 LINE L2 3187 3267 -5 632 342 170 23 chr21 22644917 22645756 -22261814 - L2 LINE L2 -414 2900 1938 28 61 0 37 chr21 22645865 22645947 -22261623 + AT_rich Low_complexity Low_complexity 1 79 0 3947 87 22 0 chr21 22647265 22647807 -22259763 + MER41A LTR ERV1 1 554 0 3611 138 17 30 chr21 22647943 22648545 -22259025 + MER41A-int LTR ERV1 2 595 -5351 3255 173 55 22 chr21 22648538 22649296 -22258274 + MER51-int LTR ERV1 2277 2685 -2195 * 1050 145 95 0 chr21 22649297 22649476 -22258094 - THE1B LTR MaLR -166 198 3 10383 117 31 3 chr21 22649478 22651015 -22256555 - THE1B-int LTR MaLR 0 1580 1 2177 119 48 20 chr21 22651017 22651369 -22256201 - THE1B LTR MaLR -2 362 1 1433 79 40 5 chr21 22651369 22651571 -22255999 + MER41A LTR ERV1 281 489 -65 1142 253 85 46 chr21 22651779 22652238 -22255332 - MLT1D LTR MaLR -3 502 26 378 325 30 30 chr21 22653254 22653420 -22254150 - HERVL40 LTR ERVL -2743 2787 2622 33 0 0 0 chr21 22654615 22654648 -22252922 + AT_rich Low_complexity Low_complexity 1 33 0 394 349 146 19 chr21 22655207 22655617 -22251953 - L2 LINE L2 -4 3309 2848 22 0 0 0 chr21 22655648 22655670 -22251900 + AT_rich Low_complexity Low_complexity 1 22 0 262 281 34 0 chr21 22656058 22656147 -22251423 + CT-rich Low_complexity Low_complexity 4 95 0 242 291 50 71 chr21 22656160 22656301 -22251269 - L2 LINE L2 -5 3308 3171 181 286 0 63 chr21 22656728 22656791 -22250779 + MIR SINE MIR 200 258 -4 26 0 0 0 chr21 22657067 22657093 -22250477 + AT_rich Low_complexity Low_complexity 1 26 0 5920 157 24 4 chr21 22657158 22658166 -22249404 - HSMAR2 DNA Mariner -4 1298 271 381 328 33 0 chr21 22658174 22658357 -22249213 + L1M4 LINE L1 3593 3781 -2365 1183 163 28 113 chr21 22658366 22658567 -22249003 - HSMAR2 DNA Mariner -1008 294 128 2187 98 3 19 chr21 22658567 22658884 -22248686 + AluSx SINE Alu 1 312 0 1183 163 28 113 chr21 22658884 22659001 -22248569 - HSMAR2 DNA Mariner -1174 128 3 21 36 0 0 chr21 22659435 22659463 -22248107 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 22660073 22660102 -22247468 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr21 22661750 22661782 -22245788 + AT_rich Low_complexity Low_complexity 1 32 0 254 200 36 0 chr21 22662489 22662544 -22245026 + GA-rich Low_complexity Low_complexity 2 58 0 25 0 0 0 chr21 22662664 22662689 -22244881 + AT_rich Low_complexity Low_complexity 1 25 0 365 169 12 0 chr21 22662977 22663060 -22244510 + (TA)n Simple_repeat Simple_repeat 1 84 0 327 278 142 13 chr21 22663093 22663395 -22244175 + L1M4 LINE L1 2192 2532 -3614 26 30 0 0 chr21 22663414 22663447 -22244123 + AT_rich Low_complexity Low_complexity 1 33 0 614 316 59 21 chr21 22663447 22663868 -22243702 + L1M4 LINE L1 2797 3233 -2913 214 167 0 0 chr21 22663978 22664014 -22243556 + CT-rich Low_complexity Low_complexity 1 36 0 1324 200 46 25 chr21 22664820 22664934 -22242636 + AluJo SINE Alu 9 119 -193 216 67 0 0 chr21 22664934 22664964 -22242606 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1324 200 46 25 chr21 22664964 22665134 -22242436 + AluJo SINE Alu 119 299 -13 2601 80 11 0 chr21 22665563 22665926 -22241644 - L1PA14 LINE L1 0 6161 5795 2093 141 0 0 chr21 22666089 22666395 -22241175 + AluSx SINE Alu 1 306 -6 2163 97 50 42 chr21 22666399 22666760 -22240810 + THE1B LTR MaLR 1 364 0 496 141 0 0 chr21 22667253 22667331 -22240239 + MADE1 DNA Mariner 1 78 -2 1114 278 52 32 chr21 22667411 22667947 -22239623 - MLT1E2 LTR MaLR -6 620 79 738 211 0 0 chr21 22668084 22668217 -22239353 + FLAM_C SINE Alu 1 133 0 256 315 27 34 chr21 22669019 22669168 -22238402 - LTR16B LTR ERVL -19 445 298 594 346 50 19 chr21 22669243 22669564 -22238006 + LTR16B LTR ERVL 134 464 0 2147 121 0 0 chr21 22670166 22670456 -22237114 + AluSx SINE Alu 1 290 -22 1631 165 52 35 chr21 22670529 22670898 -22236672 - THE1C LTR MaLR 0 375 1 1094 345 53 20 chr21 22671065 22671572 -22235998 + HERV16 LTR ERVL 918 1441 -3555 616 84 116 0 chr21 22672059 22672174 -22235396 - AluSg/x SINE Alu 0 303 178 1838 205 8 20 chr21 22673440 22673835 -22233735 - MLT1B LTR MaLR 0 390 1 902 218 7 149 chr21 22673903 22673961 -22233609 + MLT1A1 LTR MaLR 1 66 -299 1868 163 3 3 chr21 22673961 22674262 -22233308 - AluSx SINE Alu -9 303 3 902 218 7 149 chr21 22674262 22674293 -22233277 + MLT1A1 LTR MaLR 66 100 -265 541 44 0 0 chr21 22674293 22674410 -22233160 + L1PA3 LINE L1 6082 6198 0 902 218 7 149 chr21 22674410 22674741 -22232829 + MLT1A1 LTR MaLR 100 363 -2 826 307 88 8 chr21 22675747 22676122 -22231448 - L2 LINE L2 -1964 1350 946 493 330 89 0 chr21 22676332 22676556 -22231014 - MIR SINE MIR 0 262 19 21 0 0 0 chr21 22676939 22676960 -22230610 + AT_rich Low_complexity Low_complexity 1 21 0 27 73 0 0 chr21 22677011 22677066 -22230504 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr21 22677711 22677734 -22229836 + AT_rich Low_complexity Low_complexity 1 23 0 1612 143 66 77 chr21 22678082 22678461 -22229109 - THE1C LTR MaLR 0 375 1 2448 84 14 14 chr21 22678461 22678816 -22228754 - THE1C-int LTR MaLR 0 1580 1226 1440 154 58 81 chr21 22678821 22679165 -22228405 - THE1C LTR MaLR -39 336 1 22 56 0 0 chr21 22679827 22679863 -22227707 + AT_rich Low_complexity Low_complexity 1 36 0 993 220 187 10 chr21 22680382 22680682 -22226888 - MLT1D LTR MaLR -131 374 22 1889 107 36 26 chr21 22682335 22682675 -22224895 - AluSx SINE Alu 0 343 1 25 0 0 0 chr21 22682969 22682994 -22224576 + AT_rich Low_complexity Low_complexity 1 25 0 237 65 0 0 chr21 22683413 22683444 -22224126 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr21 22683810 22683839 -22223731 + AT_rich Low_complexity Low_complexity 1 29 0 1914 270 75 53 chr21 22683896 22684975 -22222595 + L1ME2 LINE L1 5039 6139 -25 323 365 169 28 chr21 22685096 22685600 -22221970 - L3 LINE CR1 -5 1572 998 30 45 0 0 chr21 22686243 22686287 -22221283 + AT_rich Low_complexity Low_complexity 1 44 0 2154 208 41 0 chr21 22687593 22688006 -22219564 - MER52A LTR ERV1 0 1755 1326 212 164 64 0 chr21 22688018 22688128 -22219442 + (TA)n Simple_repeat Simple_repeat 1 117 0 419 362 63 0 chr21 22688538 22688759 -22218811 + MLT1I LTR MaLR 109 343 -66 24 53 0 0 chr21 22689911 22689949 -22217621 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr21 22690318 22690358 -22217212 + AT_rich Low_complexity Low_complexity 1 40 0 37 39 0 0 chr21 22691205 22691256 -22216314 + AT_rich Low_complexity Low_complexity 1 51 0 386 266 41 41 chr21 22691788 22692006 -22215564 + L1M4b LINE L1 1337 1554 -5305 1574 265 52 15 chr21 22692489 22693085 -22214485 - L1ME1 LINE L1 -5 6161 5544 647 280 64 21 chr21 22693171 22693407 -22214163 + HERVL40 LTR ERVL 5277 5522 -8 1494 264 31 37 chr21 22693430 22693941 -22213629 + LTR40a LTR ERVL 12 519 0 182 224 12 0 chr21 22695036 22695121 -22212449 + (TA)n Simple_repeat Simple_repeat 2 87 0 2105 113 0 0 chr21 22696167 22696458 -22211112 - AluSx SINE Alu -21 291 1 1699 148 86 17 chr21 22696483 22696834 -22210736 + THE1C LTR MaLR 1 375 0 2231 147 143 5 chr21 22696834 22697276 -22210294 + THE1C-int LTR MaLR 1 503 -1077 2270 90 0 0 chr21 22698801 22699100 -22208470 + AluY SINE Alu 1 299 -12 22 0 0 0 chr21 22699513 22699535 -22208035 + AT_rich Low_complexity Low_complexity 1 22 0 1819 140 72 3 chr21 22699829 22700121 -22207449 + AluSx SINE Alu 1 312 0 1381 238 44 59 chr21 22700195 22700761 -22206809 + L1M4 LINE L1 4902 5452 -732 536 113 0 0 chr21 22700761 22700841 -22206729 + MADE1 DNA Mariner 1 80 0 1381 238 44 59 chr21 22700841 22700970 -22206600 + L1M4 LINE L1 5452 5581 -603 237 308 65 57 chr21 22701492 22701846 -22205724 - L1MC/D LINE L1 -1903 5905 5549 915 217 106 47 chr21 22701917 22702239 -22205331 + MER88 LTR ERVL 1 341 -123 3737 148 59 4 chr21 22703399 22704077 -22203493 - L1PA16 LINE L1 -7 6159 5445 28 29 0 0 chr21 22704500 22704535 -22203035 + AT_rich Low_complexity Low_complexity 1 35 0 10435 56 0 1 chr21 22706723 22708824 -22198746 + L1PA6 LINE L1 4048 6153 -1 625 317 106 58 chr21 22708979 22709704 -22197866 + L2 LINE L2 2530 3298 -15 37 23 0 0 chr21 22710413 22710457 -22197113 + AT_rich Low_complexity Low_complexity 1 44 0 2428 169 22 2 chr21 22710671 22711116 -22196454 + L1MB1 LINE L1 5709 6162 -6 525 191 0 0 chr21 22711117 22711232 -22196338 + (CA)n Simple_repeat Simple_repeat 2 116 0 665 177 1 5 chr21 22711253 22711385 -22196185 + L1MA10 LINE L1 6166 6311 -19 1521 103 0 14 chr21 22711528 22711742 -22195828 - AluY SINE Alu -15 296 86 180 0 0 0 chr21 22712928 22712948 -22194622 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 276 185 206 33 chr21 22713016 22713108 -22194462 + MER5C DNA MER1_type 2 109 -215 270 0 0 0 chr21 22713569 22713599 -22193971 + (T)n Simple_repeat Simple_repeat 1 30 0 2060 130 7 3 chr21 22713765 22714065 -22193505 - AluSg SINE Alu -7 303 3 2058 126 0 10 chr21 22714405 22714786 -22192784 + AluSq SINE Alu 1 313 0 571 337 110 41 chr21 22714986 22715715 -22191855 + L1M4 LINE L1 2443 3221 -2925 1318 195 53 18 chr21 22715781 22716063 -22191507 + AluJo SINE Alu 1 292 -20 31 58 0 0 chr21 22716134 22716186 -22191384 + AT_rich Low_complexity Low_complexity 1 52 0 2711 236 35 5 chr21 22716263 22716890 -22190680 + MER82 DNA MER2_type 2 647 -6 225 188 0 0 chr21 22716936 22716984 -22190586 + (TA)n Simple_repeat Simple_repeat 2 49 0 1487 212 0 3 chr21 22717267 22717560 -22190010 + AluJo SINE Alu 1 292 -20 415 389 43 0 chr21 22719240 22719518 -22188052 - MLT1J LTR MaLR -219 292 3 6782 71 3 0 chr21 22719533 22721173 -22186397 + L1PA7 LINE L1 4515 6148 -6 1030 302 63 15 chr21 22723002 22723399 -22184171 - LTR52 LTR ERVL -5 416 1 866 247 14 53 chr21 22723399 22723553 -22184017 - LTR52-int LTR ERVL 0 3556 3398 875 258 106 68 chr21 22723553 22724010 -22183560 + MLT2B1 LTR ERVL 1 439 -81 222 37 0 0 chr21 22724010 22724037 -22183533 + (TC)n Simple_repeat Simple_repeat 2 28 0 875 258 106 68 chr21 22724037 22724054 -22183516 + MLT2B1 LTR ERVL 439 454 -66 210 37 0 0 chr21 22724054 22724081 -22183489 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 875 258 106 68 chr21 22724081 22724106 -22183464 + MLT2B1 LTR ERVL 454 520 0 866 247 14 53 chr21 22724106 22724341 -22183229 - LTR52-int LTR ERVL -158 3398 2958 683 311 0 0 chr21 22724399 22724592 -22182978 - LTR52-int LTR ERVL -2735 2950 2758 1971 127 7 0 chr21 22724601 22724893 -22182677 - THE1B LTR MaLR -70 294 1 1230 225 20 4 chr21 22724893 22725146 -22182424 - LTR52-int LTR ERVL -1052 2504 2248 2890 224 23 21 chr21 22725315 22725976 -22181594 - LTR52-int LTR ERVL -3594 2091 1430 668 269 39 69 chr21 22725982 22726317 -22181253 + LTR52 LTR ERVL 95 419 -2 265 314 38 52 chr21 22728737 22728947 -22178623 + LTR40b LTR ERVL 251 457 -5 268 114 45 38 chr21 22729015 22729147 -22178423 + (TA)n Simple_repeat Simple_repeat 1 133 0 513 266 86 0 chr21 22729154 22729293 -22178277 - FRAM SINE Alu -31 145 1 2435 57 0 0 chr21 22730006 22730302 -22177268 + AluY SINE Alu 1 296 -15 348 227 48 114 chr21 22730391 22730664 -22176906 + L1MD3 LINE L1 7730 7984 -11 3120 139 11 22 chr21 22730979 22731224 -22176346 - L1PA16 LINE L1 -9 6157 5911 2253 86 7 0 chr21 22731224 22731528 -22176042 + AluSc SINE Alu 1 306 -3 3120 139 11 22 chr21 22731528 22731816 -22175754 - L1PA16 LINE L1 -255 5911 5630 1545 163 46 16 chr21 22731822 22731922 -22175648 + L1P4 LINE L1 5068 5164 -1002 1570 140 68 8 chr21 22731922 22732186 -22175384 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr21 22732186 22732227 -22175343 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 1545 163 46 16 chr21 22732227 22732581 -22174989 + L1P4 LINE L1 5163 5537 -629 411 273 36 12 chr21 22732580 22732745 -22174825 - L1MDa LINE L1 -1552 4988 4820 * 2319 259 76 72 chr21 22732732 22733076 -22174494 - L1MDa LINE L1 -2211 4329 3988 2126 140 0 0 chr21 22733076 22733384 -22174186 - AluSx SINE Alu 0 312 5 2319 259 76 72 chr21 22733384 22736231 -22171339 - L1MDa LINE L1 -2552 3988 1129 2159 106 0 13 chr21 22736231 22736534 -22171036 - AluY SINE Alu -12 299 1 2319 259 76 72 chr21 22736534 22736656 -22170914 - L1MDa LINE L1 -5411 1129 1009 23 0 0 0 chr21 22736667 22736690 -22170880 + AT_rich Low_complexity Low_complexity 1 23 0 979 227 93 51 chr21 22736695 22737008 -22170562 - MLT1D LTR MaLR 0 505 180 1951 136 3 3 chr21 22737029 22737337 -22170233 - L1PA13 LINE L1 -5 6158 5851 5348 154 10 1 chr21 22737337 22738582 -22168988 - L1PA13 LINE L1 -548 5615 4362 806 243 5 16 chr21 22738582 22738771 -22168799 - MLT1D LTR MaLR -310 195 9 216 0 0 0 chr21 22738970 22738994 -22168576 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2194 80 3 3 chr21 22739001 22739288 -22168282 - AluY SINE Alu -24 287 1 22 0 0 0 chr21 22739437 22739459 -22168111 + AT_rich Low_complexity Low_complexity 1 22 0 821 80 12 12 chr21 22740719 22740890 -22166680 + LTR12 LTR ERV1 1 285 -429 250 211 0 0 chr21 22740891 22740943 -22166627 + LTR30 LTR ERV1 553 604 -118 1572 90 36 5 chr21 22741143 22741366 -22166204 - MER30 DNA MER1_type 0 230 1 635 290 11 27 chr21 22741942 22742128 -22165442 - MER5A DNA MER1_type 0 189 7 2280 103 0 0 chr21 22742911 22743212 -22164358 + AluSc SINE Alu 1 301 -8 734 55 38 77 chr21 22743947 22744130 -22163440 + (ATATG)n Simple_repeat Simple_repeat 1 176 0 379 261 87 31 chr21 22744428 22744623 -22162947 - L1ME4a LINE L1 -267 5854 5649 189 316 0 0 chr21 22746548 22746605 -22160965 - L2 LINE L2 0 3313 3257 186 189 0 0 chr21 22746658 22746695 -22160875 + CT-rich Low_complexity Low_complexity 4 40 0 2127 261 80 9 chr21 22746732 22747731 -22159839 - L1MEc LINE L1 -2948 3267 2198 1028 218 105 0 chr21 22747731 22747960 -22159610 - MLT1D LTR MaLR -1 504 252 9616 155 41 3 chr21 22747972 22750527 -22157043 + L1PA10 LINE L1 3563 6167 -1 267 79 0 0 chr21 22750562 22750600 -22156970 + (TC)n Simple_repeat Simple_repeat 1 38 0 1025 236 26 0 chr21 22750622 22750851 -22156719 - MLT1D LTR MaLR -268 237 3 668 246 124 42 chr21 22750851 22751434 -22156136 - L1MEc LINE L1 -4177 2219 1473 738 243 73 38 chr21 22751527 22751840 -22155730 - L1MEc LINE L1 -5476 920 597 692 276 68 50 chr21 22751865 22752303 -22155267 - L1MEc LINE L1 -5895 501 56 363 281 88 42 chr21 22752327 22752453 -22155117 - L1MC4 LINE L1 -4 8038 7899 2154 125 3 3 chr21 22752453 22752766 -22154804 + AluSp SINE Alu 1 313 0 363 281 88 42 chr21 22752766 22752831 -22154739 - L1MC4 LINE L1 -143 7899 7838 21 36 0 0 chr21 22753622 22753650 -22153920 + AT_rich Low_complexity Low_complexity 1 28 0 908 236 46 29 chr21 22753656 22753936 -22153634 - MLT1F LTR MaLR 0 542 258 186 43 0 0 chr21 22754334 22754357 -22153213 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1080 136 28 6 chr21 22754357 22754523 -22153047 - L1PA10 LINE L1 -17 6151 5979 27 0 0 0 chr21 22754799 22754826 -22152744 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr21 22754980 22755014 -22152556 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr21 22755306 22755330 -22152240 + AT_rich Low_complexity Low_complexity 1 24 0 1187 185 117 12 chr21 22755644 22755969 -22151601 - L1MB8 LINE L1 -16 6162 5804 1651 196 19 5 chr21 22755979 22756346 -22151224 + L1 LINE L1 4936 5307 -839 506 119 22 10 chr21 22756479 22756586 -22150984 + L1M LINE L1 5300 5408 -883 22 70 0 0 chr21 22757430 22757473 -22150097 + AT_rich Low_complexity Low_complexity 1 43 0 1515 199 10 10 chr21 22757473 22757779 -22149791 - AluJb SINE Alu 0 312 7 2395 63 0 3 chr21 22758187 22758489 -22149081 - AluY SINE Alu -10 301 1 1342 84 6 0 chr21 22758508 22758686 -22148884 - AluSg/x SINE Alu 0 312 134 26 74 0 0 chr21 22758956 22759010 -22148560 + AT_rich Low_complexity Low_complexity 1 54 0 33 56 0 0 chr21 22759747 22759801 -22147769 + AT_rich Low_complexity Low_complexity 1 54 0 2352 122 5 24 chr21 22759860 22760229 -22147341 - THE1B LTR MaLR -2 362 1 207 300 0 0 chr21 22760299 22760359 -22147211 + MIR SINE MIR 153 212 -50 985 217 14 0 chr21 22762678 22762899 -22144671 - AluJo SINE Alu 0 312 89 6661 182 28 3 chr21 22762915 22764077 -22143493 + L1M1 LINE L1 148 1339 -6226 315 0 0 0 chr21 22764554 22764589 -22142981 + (TG)n Simple_repeat Simple_repeat 2 36 0 5690 151 41 9 chr21 22764591 22765538 -22142032 - Tigger2 DNA MER2_type -3 2715 1734 7387 36 13 0 chr21 22765538 22767056 -22140514 - L1PA4 LINE L1 0 6155 4628 5690 151 41 9 chr21 22767056 22767089 -22140481 - Tigger2 DNA MER2_type -984 1734 1704 317 104 15 15 chr21 22767101 22767168 -22140402 - L1PB4 LINE L1 0 6156 6090 2277 120 28 14 chr21 22767168 22767527 -22140043 - THE1B LTR MaLR 0 364 1 339 308 142 0 chr21 22767536 22767656 -22139914 - MIR SINE MIR -123 139 3 2247 97 0 0 chr21 22768505 22768794 -22138776 + AluY SINE Alu 9 297 -14 1713 188 7 10 chr21 22768859 22769157 -22138413 + AluJo SINE Alu 12 308 -4 882 276 97 71 chr21 22769847 22770946 -22136624 + L1M4 LINE L1 14 1136 -5446 1250 192 23 99 chr21 22771000 22771395 -22136175 - MLT1A1 LTR MaLR 0 365 1 5444 269 77 21 chr21 22771401 22773038 -22134532 - MLT1A1-int LTR MaLR -6 1729 1 712 232 17 134 chr21 22773039 22773448 -22134122 - MLT1A1 LTR MaLR -2 363 3 2363 244 101 16 chr21 22773470 22774327 -22133243 + L1M4 LINE L1 1197 2106 -4540 198 0 0 0 chr21 22774379 22774401 -22133169 + (TG)n Simple_repeat Simple_repeat 1 22 0 616 336 112 26 chr21 22776212 22776722 -22130848 - L2 LINE L2 -1 3312 2769 331 87 0 0 chr21 22776748 22776794 -22130776 + MADE1 DNA Mariner 35 80 0 744 340 53 26 chr21 22778315 22778783 -22128787 + ERVL LTR ERVL 2042 2522 -3242 21 36 0 0 chr21 22779417 22779445 -22128125 + AT_rich Low_complexity Low_complexity 1 28 0 288 70 0 0 chr21 22779921 22779964 -22127606 + (TG)n Simple_repeat Simple_repeat 1 43 0 1669 196 0 6 chr21 22780415 22780726 -22126844 - AluJb SINE Alu -1 311 3 23 54 0 0 chr21 22781906 22781943 -22125627 + AT_rich Low_complexity Low_complexity 1 37 0 488 388 93 10 chr21 22782383 22782790 -22124780 + MLT1G1 LTR MaLR 107 547 -48 1484 167 37 14 chr21 22782866 22783160 -22124410 - AluJo SINE Alu -7 305 5 226 154 0 96 chr21 22783247 22783299 -22124271 - MLT1D LTR MaLR -458 47 1 1703 152 14 10 chr21 22783350 22783639 -22123931 + AluSx SINE Alu 1 290 -22 199 284 0 15 chr21 22785525 22785592 -22121978 - MIR SINE MIR -14 248 183 21608 115 20 14 chr21 22785757 22792120 -22115450 + L1PA7 LINE L1 6 6462 -7 376 291 34 0 chr21 22793775 22793923 -22113647 - L1MA10 LINE L1 -6 6328 6176 24 0 0 0 chr21 22793968 22793992 -22113578 + AT_rich Low_complexity Low_complexity 1 24 0 981 348 65 23 chr21 22794322 22795136 -22112434 - HERVL LTR ERVL -699 4955 4108 2019 94 35 38 chr21 22795676 22795964 -22111606 + AluSp SINE Alu 1 287 -26 296 303 8 33 chr21 22796282 22796404 -22111166 + MLT1G LTR MaLR 20 138 -452 858 376 37 11 chr21 22796411 22796844 -22110726 - LTR16A LTR ERVL -6 444 1 2422 68 7 3 chr21 22796884 22797193 -22110377 + AluY SINE Alu 1 310 -1 2315 234 11 32 chr21 22797247 22797720 -22109850 + MER74B LTR ERVL 70 531 -91 1960 133 7 10 chr21 22797720 22797907 -22109663 - AluSq SINE Alu -9 304 117 252 0 0 0 chr21 22797907 22797935 -22109635 + (TA)n Simple_repeat Simple_repeat 1 28 0 1960 133 7 10 chr21 22797935 22798049 -22109521 - AluSq SINE Alu -196 117 4 2315 234 11 32 chr21 22798049 22798140 -22109430 + MER74B LTR ERVL 531 622 0 2440 129 3 3 chr21 22799363 22799727 -22107843 + THE1B LTR MaLR 1 364 0 2377 234 7 48 chr21 22800417 22800995 -22106575 - MLT2B3 LTR ERVL 0 554 1 22 70 0 0 chr21 22802506 22802549 -22105021 + AT_rich Low_complexity Low_complexity 1 43 0 2068 173 16 10 chr21 22802938 22803326 -22104244 + MLT1B LTR MaLR 1 390 0 288 263 32 19 chr21 22803492 22803648 -22103922 + (TA)n Simple_repeat Simple_repeat 2 159 0 25 31 0 0 chr21 22804688 22804720 -22102850 + AT_rich Low_complexity Low_complexity 1 32 0 697 191 53 1 chr21 22807305 22807457 -22100113 + MSTC LTR MaLR 1 141 -287 1292 226 117 11 chr21 22807495 22807853 -22099717 + MSTD LTR MaLR 1 396 0 30 0 0 24 chr21 22809023 22809046 -22098524 + AT_rich Low_complexity Low_complexity 1 24 -16 2301 112 40 0 chr21 22809046 22809394 -22098176 + L1PA10 LINE L1 5802 6163 -5 30 0 0 24 chr21 22809394 22809411 -22098159 + AT_rich Low_complexity Low_complexity 24 40 0 290 315 24 47 chr21 22809663 22809790 -22097780 + MIR SINE MIR 29 152 -110 293 269 15 0 chr21 22810152 22810219 -22097351 + MIR SINE MIR 53 120 -142 2302 76 0 3 chr21 22811009 22811312 -22096258 + AluY SINE Alu 1 302 -9 569 251 105 6 chr21 22811434 22811605 -22095965 - MER5A DNA MER1_type 0 189 2 2215 172 52 0 chr21 22812040 22812447 -22095123 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr21 22812704 22812727 -22094843 + AT_rich Low_complexity Low_complexity 1 23 0 1455 171 10 63 chr21 22812820 22813119 -22094451 + AluJb SINE Alu 2 284 -28 2247 62 0 0 chr21 22815488 22815762 -22091808 - AluY SINE Alu -12 299 26 496 197 8 33 chr21 22815776 22815898 -22091672 - L1MB8 LINE L1 -6 6241 6123 433 145 0 0 chr21 22815914 22815983 -22091587 - MLT1A1 LTR MaLR -16 349 281 2635 237 77 45 chr21 22815983 22816036 -22091534 - L1MB8 LINE L1 -615 5628 5578 2238 137 15 101 chr21 22816036 22816277 -22091293 - MSTB LTR MaLR 0 426 166 2108 105 7 0 chr21 22816277 22816572 -22090998 - AluSp SINE Alu -15 298 2 2238 137 15 101 chr21 22816572 22816613 -22090957 - MSTB LTR MaLR -260 166 123 1777 149 27 3 chr21 22816613 22816914 -22090656 - AluSx SINE Alu -4 308 1 2238 137 15 101 chr21 22816914 22817096 -22090474 - MSTB LTR MaLR -303 123 1 2635 237 77 45 chr21 22817096 22817318 -22090252 - L1MB8 LINE L1 -665 5578 5364 1765 84 0 52 chr21 22817318 22817569 -22090001 - AluSc SINE Alu -2 307 70 2635 237 77 45 chr21 22817569 22818570 -22089000 - L1MB8 LINE L1 -879 5364 4292 430 235 67 20 chr21 22818570 22818719 -22088851 - L1MB8 LINE L1 -2335 3880 3725 1238 282 44 41 chr21 22818724 22819365 -22088205 - L1MB8 LINE L1 -3558 2657 2055 2283 69 0 10 chr21 22819365 22819656 -22087914 - AluY SINE Alu -23 288 1 1238 282 44 41 chr21 22819656 22819980 -22087590 - L1MB8 LINE L1 -4160 2055 1734 316 257 51 76 chr21 22819998 22820294 -22087276 - L1MCa LINE L1 -4441 2166 1780 590 322 17 0 chr21 22820295 22820469 -22087101 + HERVL40 LTR ERVL 2744 2920 -2610 631 251 57 0 chr21 22820680 22820855 -22086715 + HERVL40 LTR ERVL 3412 3596 -1934 1940 170 223 59 chr21 22822434 22822913 -22084657 + MER39 LTR ERV1 1 601 -106 1829 149 7 13 chr21 22822913 22823215 -22084355 + AluJb SINE Alu 1 300 -12 1940 170 223 59 chr21 22823215 22823341 -22084229 + MER39 LTR ERV1 601 705 -2 1832 48 0 4 chr21 22823585 22823813 -22083757 - AluY SINE Alu 0 311 85 356 342 101 46 chr21 22824020 22824257 -22083313 - MIR SINE MIR -1 261 12 2051 83 22 11 chr21 22824763 22825080 -22082490 - AluSg SINE Alu 0 320 1 421 287 167 0 chr21 22825316 22825466 -22082104 - MER5A DNA MER1_type -6 183 9 1894 161 107 13 chr21 22825789 22826180 -22081390 + MSTA LTR MaLR 1 428 0 1259 187 90 4 chr21 22826873 22827151 -22080419 + MER67C LTR ERV1 69 370 -340 2168 137 16 124 chr21 22827171 22827719 -22079851 - L1MA8 LINE L1 -5 6286 5798 253 132 0 0 chr21 22827729 22827767 -22079803 + MER67C LTR ERV1 361 398 -312 424 188 30 20 chr21 22827812 22827913 -22079657 + MER67D LTR ERV1 306 407 -107 931 232 131 20 chr21 22828302 22828470 -22079100 - L1M4 LINE L1 -1293 5664 5516 1954 148 0 0 chr21 22828470 22828768 -22078802 - AluSx SINE Alu -14 298 1 931 232 131 20 chr21 22828768 22828995 -22078575 - L1M4 LINE L1 -1441 5516 5225 440 216 79 29 chr21 22828991 22829130 -22078440 - L1M4 LINE L1 -6679 180 35 * 260 252 184 10 chr21 22829524 22829627 -22077943 - L1MC4 LINE L1 -132 7910 7790 1976 172 37 38 chr21 22830124 22830681 -22076889 + MLT2A2 LTR ERVL 1 552 -2 323 162 9 0 chr21 22830954 22831019 -22076551 - MLT1E1 LTR MaLR -9 645 473 2033 212 30 20 chr21 22831134 22831630 -22075940 - L1 LINE L1 -2207 3939 3439 2115 204 15 57 chr21 22831640 22832185 -22075385 + L1MB1 LINE L1 4569 5090 -1056 4532 172 24 9 chr21 22832201 22833084 -22074486 + L1MB1 LINE L1 5272 6167 -1 24 0 0 0 chr21 22833195 22833219 -22074351 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr21 22833406 22833443 -22074127 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 0 24 chr21 22833466 22833507 -22074063 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1540 195 51 54 chr21 22833553 22833883 -22073687 + MER65C LTR ERV1 12 381 -150 1774 116 62 11 chr21 22833883 22834158 -22073412 - AluSx SINE Alu -5 307 19 1540 195 51 54 chr21 22834158 22834309 -22073261 + MER65C LTR ERV1 381 531 0 1686 169 0 20 chr21 22835082 22835377 -22072193 + AluJb SINE Alu 1 289 -23 23 54 0 0 chr21 22835508 22835545 -22072025 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 22835566 22835587 -22071983 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 22835853 22835875 -22071695 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr21 22836228 22836259 -22071311 + AT_rich Low_complexity Low_complexity 1 31 0 241 316 51 40 chr21 22836752 22836929 -22070641 + L2 LINE L2 3135 3313 0 25 51 0 0 chr21 22838396 22838435 -22069135 + AT_rich Low_complexity Low_complexity 1 39 0 225 182 91 0 chr21 22838743 22838798 -22068772 - L1MC4 LINE L1 -1339 6703 6644 421 298 44 13 chr21 22839284 22839512 -22068058 - HAL1 LINE L1 -1171 1336 1102 37 18 0 18 chr21 22839512 22839531 -22068039 + AT_rich Low_complexity Low_complexity 1 19 -35 1711 155 25 0 chr21 22839531 22839809 -22067761 + AluJb SINE Alu 1 285 -27 37 18 0 18 chr21 22839809 22839844 -22067726 + AT_rich Low_complexity Low_complexity 19 54 0 1657 256 70 62 chr21 22839928 22840357 -22067213 - L1ME2 LINE L1 -15 6149 5710 1809 184 3 0 chr21 22840357 22840661 -22066909 + AluJb SINE Alu 1 305 -7 1657 256 70 62 chr21 22840661 22840990 -22066580 - L1ME2 LINE L1 -454 5710 5385 714 119 37 0 chr21 22841074 22841183 -22066387 - AluSg/x SINE Alu -55 257 145 1577 157 8 0 chr21 22841078 22841326 -22066244 - AluSx SINE Alu -62 250 1 328 250 33 43 chr21 22841326 22841418 -22066152 - L1M4b LINE L1 -6758 101 11 231 254 0 0 chr21 22841426 22841481 -22066089 - L1MDa LINE L1 -4615 1925 1871 180 125 0 0 chr21 22842190 22842222 -22065348 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 945 172 5 84 chr21 22842225 22842440 -22065130 - AluJo SINE Alu -29 283 86 194 108 54 0 chr21 22842522 22842559 -22065011 + (CATA)n Simple_repeat Simple_repeat 2 40 0 195 132 0 105 chr21 22842572 22842648 -22064922 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 720 269 16 0 chr21 22843177 22843363 -22064207 - MLT1D LTR MaLR 0 505 317 933 110 24 43 chr21 22843380 22843544 -22064026 - THE1B LTR MaLR -55 309 149 741 257 8 65 chr21 22843588 22843833 -22063737 - MLT1D LTR MaLR -262 243 13 21 0 0 0 chr21 22844210 22844231 -22063339 + AT_rich Low_complexity Low_complexity 1 21 0 672 152 7 46 chr21 22844536 22844687 -22062883 + L1 LINE L1 5221 5365 -781 3815 208 42 21 chr21 22844720 22844952 -22062618 + L1PB4 LINE L1 5272 5498 -658 2020 141 51 25 chr21 22844952 22845307 -22062263 + THE1B LTR MaLR 1 364 0 11054 108 6 1 chr21 22845307 22846879 -22060691 + THE1B-int LTR MaLR 1 1580 0 1907 151 54 26 chr21 22846881 22847233 -22060337 + THE1B LTR MaLR 3 364 0 3815 208 42 21 chr21 22847233 22847519 -22060051 + L1PB4 LINE L1 5498 5777 -379 321 26 0 0 chr21 22847519 22847557 -22060013 + (TG)n Simple_repeat Simple_repeat 1 38 0 3815 208 42 21 chr21 22847557 22847895 -22059675 + L1PB4 LINE L1 5777 6151 -5 345 294 21 80 chr21 22848683 22848870 -22058700 - L2 LINE L2 -5 3308 3133 26 30 0 0 chr21 22849084 22849117 -22058453 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr21 22849286 22849315 -22058255 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr21 22849470 22849509 -22058061 + AT_rich Low_complexity Low_complexity 1 39 0 2183 105 3 0 chr21 22850146 22850450 -22057120 - AluY SINE Alu -6 305 1 207 0 0 0 chr21 22850540 22850563 -22057007 + (TTA)n Simple_repeat Simple_repeat 2 24 0 310 276 60 52 chr21 22851380 22851514 -22056056 + L2 LINE L2 3176 3310 -3 9820 159 26 26 chr21 22852774 22853196 -22054374 + Tigger1 DNA MER2_type 2 423 -1995 2473 74 0 0 chr21 22853196 22853506 -22054064 + AluSg SINE Alu 1 310 0 9820 159 26 26 chr21 22853506 22854893 -22052677 + Tigger1 DNA MER2_type 422 1811 -607 2555 156 21 5 chr21 22854891 22855328 -22052242 + Tigger1 DNA MER2_type 1975 2418 0 * 1234 209 75 4 chr21 22855626 22855746 -22051824 + AluJo SINE Alu 3 113 -199 351 113 0 0 chr21 22855746 22855799 -22051771 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1234 209 75 4 chr21 22855799 22855956 -22051614 + AluJo SINE Alu 113 300 -12 210 250 13 92 chr21 22856076 22856152 -22051418 - L2 LINE L2 -2 3311 3242 249 222 0 0 chr21 22856268 22856322 -22051248 + (TA)n Simple_repeat Simple_repeat 2 55 0 225 333 30 20 chr21 22857081 22857180 -22050390 + MIR SINE MIR 30 129 -133 988 240 126 76 chr21 22858097 22858572 -22048998 + MLT1D LTR MaLR 1 499 -6 1696 239 48 39 chr21 22858638 22858833 -22048737 + MLT1D-int LTR MaLR 32 224 -1147 198 0 0 0 chr21 22858833 22858855 -22048715 + (TG)n Simple_repeat Simple_repeat 2 23 0 1696 239 48 39 chr21 22858855 22859283 -22048287 + MLT1D-int LTR MaLR 224 661 -710 1396 286 16 98 chr21 22859329 22860120 -22047450 + MLT1D-int LTR MaLR 654 1730 -5 1380 223 132 42 chr21 22860146 22860594 -22046976 + MLT1D LTR MaLR 18 505 0 243 233 33 40 chr21 22861000 22861150 -22046420 + (CATAA)n Simple_repeat Simple_repeat 5 153 0 287 221 52 23 chr21 22861173 22861392 -22046178 + (TTATA)n Simple_repeat Simple_repeat 1 225 0 329 207 71 0 chr21 22861491 22861631 -22045939 + (TA)n Simple_repeat Simple_repeat 1 150 0 272 269 199 0 chr21 22861951 22862092 -22045478 + L1MC/D LINE L1 5569 5737 -2071 282 29 0 0 chr21 22862151 22862186 -22045384 + (TG)n Simple_repeat Simple_repeat 2 36 0 611 260 72 31 chr21 22862187 22862410 -22045160 - MLT2D LTR ERVL -63 351 120 7900 226 58 28 chr21 22862411 22863983 -22043587 - ERVL-D LTR ERVL -3538 2226 586 1543 160 0 0 chr21 22863983 22864220 -22043350 - AluSg/x SINE Alu -2 308 72 7900 226 58 28 chr21 22864220 22864527 -22043043 - ERVL-D LTR ERVL -5178 586 290 1011 126 0 0 chr21 22864551 22864710 -22042860 + (TA)n Simple_repeat Simple_repeat 2 160 0 21 0 0 0 chr21 22864856 22864877 -22042693 + AT_rich Low_complexity Low_complexity 1 21 0 754 175 0 14 chr21 22864903 22865046 -22042524 + L1PB3 LINE L1 6005 6145 -9 26 30 0 0 chr21 22865046 22865079 -22042491 + AT_rich Low_complexity Low_complexity 1 33 0 669 184 59 0 chr21 22865079 22865215 -22042355 - L1MA4 LINE L1 -8 6292 6149 921 213 44 88 chr21 22865231 22865574 -22041996 - MLT2D LTR ERVL 0 414 87 257 288 154 42 chr21 22865616 22865777 -22041793 + L1MC4a LINE L1 7136 7278 -764 1717 149 0 44 chr21 22865777 22866135 -22041435 + AluSx SINE Alu 1 345 0 257 288 154 42 chr21 22866135 22866378 -22041192 + L1MC4a LINE L1 7278 7678 -364 3847 147 5 68 chr21 22866426 22866756 -22040814 + LTR8 LTR ERV1 1 262 -429 2043 85 0 41 chr21 22866756 22867086 -22040484 - AluY SINE Alu 0 319 2 3847 147 5 68 chr21 22867086 22867491 -22040079 + LTR8 LTR ERV1 262 691 0 331 244 97 29 chr21 22867686 22867822 -22039748 + L1MC4 LINE L1 1937 6985 -1337 934 234 79 15 chr21 22867823 22868088 -22039482 + MER67C LTR ERV1 123 404 -306 307 189 11 53 chr21 22868122 22868217 -22039353 + MER67D LTR ERV1 288 378 -136 2449 168 82 21 chr21 22868305 22868866 -22038704 - LTR49 LTR ERV1 0 595 1 3891 56 23 0 chr21 22870078 22870557 -22037013 + LTR2B LTR ERV1 1 490 0 27 29 0 0 chr21 22870724 22870758 -22036812 + AT_rich Low_complexity Low_complexity 1 34 0 4970 168 17 8 chr21 22871341 22872236 -22035334 + MER4D LTR ERV1 1 903 0 3740 118 4 2 chr21 22872589 22873142 -22034428 - MER41A LTR ERV1 0 554 1 707 263 117 22 chr21 22873157 22873602 -22033968 - L1M4 LINE L1 -1460 4686 4200 253 336 43 0 chr21 22873612 22873728 -22033842 + MLT1G1 LTR MaLR 38 158 -437 832 231 54 5 chr21 22873830 22874033 -22033537 - L1MC3 LINE L1 -597 7188 6976 1759 86 119 4 chr21 22874425 22874693 -22032877 + AluSg SINE Alu 1 299 -1 2274 107 3 0 chr21 22875266 22875574 -22031996 - AluSg SINE Alu -1 309 1 895 187 72 0 chr21 22876302 22876468 -22031102 + AluJo SINE Alu 86 263 -49 499 213 179 83 chr21 22876538 22876778 -22030792 - MLT1J LTR MaLR -5 506 244 1215 146 15 10 chr21 22876799 22877004 -22030566 + L1PB4 LINE L1 5943 6148 -8 180 0 0 0 chr21 22877070 22877090 -22030480 + (A)n Simple_repeat Simple_repeat 1 20 0 1987 80 66 7 chr21 22877090 22877376 -22030194 + AluYa5 SINE Alu 1 303 -8 2142 95 3 0 chr21 22877376 22877683 -22029887 + AluSq SINE Alu 1 308 0 372 221 16 16 chr21 22878510 22878632 -22028938 + L1ME4a LINE L1 5994 6115 -6 22 35 0 0 chr21 22878780 22878809 -22028761 + AT_rich Low_complexity Low_complexity 1 29 0 736 128 15 8 chr21 22879737 22879870 -22027700 + CT-rich Low_complexity Low_complexity 3 136 0 598 264 60 28 chr21 22880725 22880941 -22026629 - MIR SINE MIR 0 262 40 238 325 0 0 chr21 22881651 22881728 -22025842 - MER5C DNA MER1_type -223 101 25 1650 188 24 72 chr21 22881995 22882411 -22025159 + MSTD LTR MaLR 1 396 0 323 261 172 56 chr21 22883365 22883545 -22024025 - L1ME3A LINE L1 -2 6168 5968 310 239 116 14 chr21 22883585 22883723 -22023847 - L1MC5 LINE L1 -36 7925 7774 199 281 35 0 chr21 22883897 22883954 -22023616 - MER5A DNA MER1_type -76 113 55 1084 215 0 5 chr21 22885363 22885577 -22021993 - AluJo SINE Alu -90 222 10 2280 103 3 0 chr21 22885943 22886243 -22021327 - AluSg SINE Alu -9 301 1 1311 209 6 68 chr21 22886454 22886775 -22020795 - AluJo SINE Alu 0 302 2 2249 96 3 7 chr21 22887438 22887739 -22019831 - AluSx SINE Alu -12 300 1 1485 206 64 148 chr21 22888847 22889640 -22017930 + LTR8A LTR ERV1 1 727 0 25 31 0 0 chr21 22891721 22891753 -22015817 + AT_rich Low_complexity Low_complexity 1 32 0 1726 169 0 7 chr21 22891753 22892043 -22015527 - AluSx SINE Alu -24 288 1 3115 165 2 30 chr21 22893877 22894029 -22013541 - MER50 LTR ERV1 -23 711 556 2350 82 0 3 chr21 22894029 22894332 -22013238 + AluSg SINE Alu 5 306 -4 3115 165 2 30 chr21 22894332 22894736 -22012834 - MER50 LTR ERV1 -178 556 171 997 86 0 0 chr21 22894742 22894881 -22012689 - AluY SINE Alu 0 311 173 1070 129 58 0 chr21 22894881 22895052 -22012518 - MER50 LTR ERV1 -553 181 1 1313 205 66 90 chr21 22895637 22896212 -22011358 - MER34B LTR ERV1 0 565 5 21 0 0 0 chr21 22897188 22897209 -22010361 + AT_rich Low_complexity Low_complexity 1 21 0 1088 297 57 41 chr21 22897962 22898470 -22009100 - LTR40a LTR ERVL -2 517 2 227 101 14 43 chr21 22898616 22898685 -22008885 + (TA)n Simple_repeat Simple_repeat 1 67 0 975 34 0 0 chr21 22899833 22899952 -22007618 - L1PA4 LINE L1 -3 6152 6034 222 37 0 0 chr21 22900704 22900731 -22006839 + (TC)n Simple_repeat Simple_repeat 1 27 0 422 338 21 8 chr21 22900733 22900967 -22006603 - L1MC/D LINE L1 -2003 5805 5569 1350 94 0 0 chr21 22901160 22901340 -22006230 - THE1C LTR MaLR -195 180 1 218 179 18 0 chr21 22901977 22902033 -22005537 + (TA)n Simple_repeat Simple_repeat 1 57 0 25 31 0 0 chr21 22902142 22902174 -22005396 + AT_rich Low_complexity Low_complexity 1 32 0 771 93 0 25 chr21 22902187 22902305 -22005265 - AluSp/q SINE Alu -23 290 176 398 324 11 6 chr21 22902777 22902956 -22004614 + (TA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr21 22903016 22903046 -22004524 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2213 231 124 79 chr21 22903790 22904370 -22003200 - L1MC3 LINE L1 -1 7784 7063 234 342 0 0 chr21 22904370 22904446 -22003124 - MLT1F1 LTR MaLR -457 110 35 2213 231 124 79 chr21 22904446 22904831 -22002739 - L1MC3 LINE L1 -722 7063 6697 1264 199 82 61 chr21 22904946 22905323 -22002247 - MLT1B LTR MaLR 0 390 6 1372 219 121 91 chr21 22905326 22906091 -22001479 + LTR1B LTR ERV1 1 985 -35 28 0 0 0 chr21 22906365 22906393 -22001177 + AT_rich Low_complexity Low_complexity 1 28 0 340 304 55 70 chr21 22908233 22908490 -21999080 - LTR40b LTR ERVL -77 385 133 1714 172 0 44 chr21 22908823 22908958 -21998612 + AluJb SINE Alu 1 140 -172 6148 33 1 0 chr21 22908958 22909694 -21997876 + L1PA4 LINE L1 5419 6155 0 1714 172 0 44 chr21 22909694 22909877 -21997693 + AluJb SINE Alu 140 305 -7 1379 231 40 23 chr21 22909991 22910342 -21997228 + MLT1A1 LTR MaLR 1 357 -8 293 284 121 53 chr21 22910358 22911659 -21995911 + L1MEc LINE L1 546 2010 -4251 529 25 0 63 chr21 22911815 22911894 -21995676 + AluY SINE Alu 228 301 -11 2163 274 30 14 chr21 22911898 22912772 -21994798 + L1MEc LINE L1 2177 3064 -3016 407 165 0 117 chr21 22912842 22912945 -21994625 - MER76 LTR ERV -597 91 1 985 118 12 35 chr21 22913431 22913550 -21994020 - L1PB1 LINE L1 -1 6150 6035 2461 93 8 3 chr21 22913550 22913903 -21993667 - THE1A LTR MaLR 0 355 1 985 118 12 35 chr21 22913903 22913953 -21993617 - L1PB1 LINE L1 -116 6035 5985 886 107 0 158 chr21 22913953 22914111 -21993459 + L1P5 LINE L1 5656 5779 -372 291 93 0 0 chr21 22914111 22914154 -21993416 + (CA)n Simple_repeat Simple_repeat 2 44 0 886 107 0 158 chr21 22914154 22914191 -21993379 + L1P5 LINE L1 5779 5820 -331 414 310 107 31 chr21 22914223 22914707 -21992863 + L1MEc LINE L1 3533 4053 -2027 4486 202 40 52 chr21 22917251 22918377 -21989193 + MER89-int LTR ERV1 2841 3952 -2849 2286 237 8 16 chr21 22918383 22918894 -21988676 + MER89-int LTR ERV1 6290 6796 -5 1444 254 34 8 chr21 22918898 22919346 -21988224 + MER89 LTR ERV1 1 559 0 215 261 72 150 chr21 22919570 22919723 -21987847 + MIR SINE MIR 50 190 -72 2206 65 0 0 chr21 22920453 22920729 -21986841 - AluY SINE Alu 0 311 36 1972 123 29 16 chr21 22921319 22921628 -21985942 + AluSq SINE Alu 1 313 0 21 57 0 0 chr21 22922375 22922410 -21985160 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 22922598 22922619 -21984951 + AT_rich Low_complexity Low_complexity 1 21 0 984 233 100 48 chr21 22923101 22923431 -21984139 + MLT1A2 LTR MaLR 1 347 -27 24 0 0 0 chr21 22924647 22924671 -21982899 + AT_rich Low_complexity Low_complexity 1 24 0 222 345 0 12 chr21 22924718 22924802 -21982768 + MIR SINE MIR 180 262 0 2171 123 0 0 chr21 22926248 22926549 -21981021 - AluSx SINE Alu -11 301 1 880 167 41 72 chr21 22926888 22927274 -21980296 + L1MB3 LINE L1 5288 5793 -390 323 289 0 0 chr21 22927320 22927403 -21980167 + L1MC4 LINE L1 6614 6696 -1346 285 29 0 0 chr21 22927404 22927438 -21980132 + (CA)n Simple_repeat Simple_repeat 2 35 0 2178 107 3 0 chr21 22927441 22927732 -21979838 - AluSx SINE Alu -20 292 1 1839 162 36 8 chr21 22927742 22928101 -21979469 + L1MB3 LINE L1 5804 6172 -11 6781 70 6 0 chr21 22929940 22931216 -21976354 - L1PA7 LINE L1 0 6154 4877 2791 100 81 24 chr21 22931216 22931675 -21975895 + L1P LINE L1 2086 2570 -3576 406 181 12 0 chr21 22932585 22932668 -21974902 - L1MA6 LINE L1 0 6300 6217 1703 157 39 0 chr21 22932670 22932975 -21974595 + L1MA6 LINE L1 5621 5937 -363 2113 136 0 0 chr21 22933241 22933550 -21974020 + AluSc SINE Alu 1 309 0 22 70 0 0 chr21 22933894 22933937 -21973633 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr21 22934060 22934097 -21973473 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 22934538 22934559 -21973011 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 22934746 22934779 -21972791 + AT_rich Low_complexity Low_complexity 1 33 0 192 254 75 0 chr21 22935404 22935471 -21972099 - MIR SINE MIR -13 249 178 331 89 0 0 chr21 22935704 22935760 -21971810 + L1PA3 LINE L1 6100 6155 0 21 0 0 0 chr21 22936006 22936027 -21971543 + AT_rich Low_complexity Low_complexity 1 21 0 2198 225 19 6 chr21 22936235 22936747 -21970823 - LTR53 LTR ERVL 0 519 1 24 0 0 0 chr21 22937378 22937402 -21970168 + AT_rich Low_complexity Low_complexity 1 24 0 571 121 0 0 chr21 22937402 22937493 -21970077 - L1MA8 LINE L1 -6 6285 6195 216 0 0 0 chr21 22938649 22938673 -21968897 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1879 149 0 4 chr21 22938676 22938957 -21968613 - AluSg SINE Alu -30 280 1 22 0 0 0 chr21 22939447 22939469 -21968101 + AT_rich Low_complexity Low_complexity 1 22 0 366 154 0 0 chr21 22940287 22940365 -21967205 + GA-rich Low_complexity Low_complexity 2 79 0 4683 169 42 0 chr21 22940592 22941436 -21966134 - L1PA16 LINE L1 -3 6163 5285 6974 233 11 1 chr21 22941447 22943083 -21964487 + L1PA16 LINE L1 3607 5258 -888 419 274 101 30 chr21 22944088 22944256 -21963314 - MIR SINE MIR -21 241 62 1666 237 103 36 chr21 22945306 22945888 -21961682 + MER74B LTR ERVL 1 621 -1 1498 189 6 22 chr21 22946691 22947008 -21960562 + AluJb SINE Alu 1 312 0 261 57 0 0 chr21 22947017 22947052 -21960518 + (GA)n Simple_repeat Simple_repeat 2 36 0 230 412 25 8 chr21 22948279 22948398 -21959172 - MIR3 SINE MIR -73 135 15 1913 157 0 0 chr21 22948434 22948728 -21958842 + AluSx SINE Alu 1 294 -18 192 40 0 0 chr21 22948914 22948939 -21958631 + (TC)n Simple_repeat Simple_repeat 2 26 0 288 111 0 0 chr21 22949561 22949606 -21957964 + (TG)n Simple_repeat Simple_repeat 2 46 0 1627 200 79 9 chr21 22950904 22951234 -21956336 - MLT1A1 LTR MaLR -12 353 1 297 296 30 15 chr21 22952075 22952207 -21955363 - LTR33 LTR ERVL -4 517 384 258 192 0 0 chr21 22952341 22952393 -21955177 + (TG)n Simple_repeat Simple_repeat 2 53 0 1188 227 12 102 chr21 22952432 22952833 -21954737 + MLT1A1 LTR MaLR 1 365 0 237 98 0 0 chr21 22953035 22953076 -21954494 + (TG)n Simple_repeat Simple_repeat 2 42 0 625 69 0 0 chr21 22955189 22955276 -21952294 - L1PB4 LINE L1 -1 6155 6069 201 133 0 0 chr21 22956449 22956479 -21951091 + (CA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr21 22957055 22957076 -21950494 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 652 347 100 14 chr21 22957459 22957958 -21949612 - L2 LINE L2 0 3313 2776 23 78 0 0 chr21 22958677 22958728 -21948842 + AT_rich Low_complexity Low_complexity 1 51 0 225 0 0 0 chr21 22958761 22958786 -21948784 + (TG)n Simple_repeat Simple_repeat 2 26 0 988 323 58 8 chr21 22958862 22959262 -21948308 + LTR16C LTR ERVL 72 491 0 222 324 22 86 chr21 22959788 22960010 -21947560 + MIR SINE MIR 53 260 -2 330 67 0 0 chr21 22960706 22960751 -21946819 + (CA)n Simple_repeat Simple_repeat 1 45 0 243 281 0 61 chr21 22960772 22960854 -21946716 + MER5A DNA MER1_type 33 109 -80 23 54 0 0 chr21 22961125 22961162 -21946408 + AT_rich Low_complexity Low_complexity 1 37 0 719 225 12 0 chr21 22962683 22962843 -21944727 + MLT2B1 LTR ERVL 2 163 -357 311 321 105 38 chr21 22962893 22963102 -21944468 + MLT1H LTR MaLR 92 314 -235 27 29 0 0 chr21 22963781 22963815 -21943755 + AT_rich Low_complexity Low_complexity 1 34 0 465 254 0 0 chr21 22964085 22964195 -21943375 - LTR40a LTR ERVL -61 458 349 642 308 60 30 chr21 22964333 22964567 -21943003 - LTR40a LTR ERVL -175 344 96 2114 233 39 22 chr21 22964567 22965027 -21942543 + MER70A LTR ERVL 3 470 -2 642 308 60 30 chr21 22965027 22965123 -21942447 - LTR40a LTR ERVL -423 96 4 1298 215 7 22 chr21 22966774 22967048 -21940522 - AluJo SINE Alu -14 298 29 3680 32 0 1 chr21 22967102 22967732 -21939838 - L1PA4 LINE L1 -575 5580 4952 4801 29 0 9 chr21 22967732 22968313 -21939257 + L1PA4 LINE L1 5579 6155 0 1489 217 13 63 chr21 22968428 22968806 -21938764 + MLT1A1 LTR MaLR 7 365 0 22 0 0 0 chr21 22969487 22969509 -21938061 + AT_rich Low_complexity Low_complexity 1 22 0 336 335 26 26 chr21 22969537 22969731 -21937839 - LTR33 LTR ERVL -20 501 308 2460 33 3 0 chr21 22970701 22971002 -21936568 + L1PA5 LINE L1 5853 6154 0 1883 131 65 0 chr21 22971336 22971626 -21935944 + AluSp SINE Alu 3 311 -2 581 172 36 0 chr21 22971790 22971906 -21935664 - MLT1C LTR MaLR -51 452 317 3163 189 35 92 chr21 22971946 22972311 -21935259 - L1PB4 LINE L1 -4 6152 5768 306 0 0 0 chr21 22972311 22972345 -21935225 + (TG)n Simple_repeat Simple_repeat 2 35 0 3163 189 35 92 chr21 22972345 22972876 -21934694 - L1PB4 LINE L1 -388 5768 5355 1711 138 4 33 chr21 22972876 22973151 -21934419 - AluSx SINE Alu -45 267 1 3163 189 35 92 chr21 22973151 22973782 -21933788 - L1PB4 LINE L1 -801 5355 4690 21 0 0 0 chr21 22974361 22974382 -21933188 + AT_rich Low_complexity Low_complexity 1 21 0 698 207 117 6 chr21 22975067 22975246 -21932324 + MLT1D LTR MaLR 305 503 -2 2207 66 0 4 chr21 22976305 22976579 -21930991 + AluY SINE Alu 24 296 -15 1010 226 0 0 chr21 22976631 22976817 -21930753 + MLT1B LTR MaLR 203 388 -2 22 0 0 0 chr21 22977564 22977586 -21929984 + AT_rich Low_complexity Low_complexity 1 22 0 1465 196 73 3 chr21 22977838 22978179 -21929391 + MLT1A1 LTR MaLR 1 365 0 4042 158 23 5 chr21 22978379 22979685 -21927885 + L1MA1 LINE L1 4541 5873 -429 1380 91 0 35 chr21 22979691 22979888 -21927682 - AluY SINE Alu -5 306 117 2582 148 14 2 chr21 22979888 22980320 -21927250 + L1MA1 LINE L1 5858 6294 -8 27 49 0 0 chr21 22980601 22980642 -21926928 + AT_rich Low_complexity Low_complexity 1 41 0 252 130 0 0 chr21 22980995 22981041 -21926529 + (TG)n Simple_repeat Simple_repeat 2 47 0 31 26 0 0 chr21 22981324 22981362 -21926208 + AT_rich Low_complexity Low_complexity 1 38 0 49 76 0 0 chr21 22981724 22981829 -21925741 + AT_rich Low_complexity Low_complexity 1 105 0 22 56 0 0 chr21 22981911 22981947 -21925623 + AT_rich Low_complexity Low_complexity 1 36 0 552 192 48 0 chr21 22982873 22982998 -21924572 - MER34 LTR ERV1 0 542 412 180 373 0 0 chr21 22983074 22983133 -21924437 + L2 LINE L2 3137 3195 -77 33 43 0 0 chr21 22984434 22984481 -21923089 + AT_rich Low_complexity Low_complexity 1 47 0 343 321 12 56 chr21 22984502 22984664 -21922906 + MIR SINE MIR 3 157 -105 1912 240 92 109 chr21 22985414 22986071 -21921499 - L1MEc LINE L1 -3460 2755 2088 285 160 20 0 chr21 22986071 22986121 -21921449 - MER66B LTR ERV1 -141 345 295 1912 240 92 109 chr21 22986121 22987629 -21919941 - L1MEc LINE L1 -4127 2088 625 416 189 0 0 chr21 22987708 22987782 -21919788 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 540 279 24 12 chr21 22987882 22988047 -21919523 - L1MEc LINE L1 -6012 384 218 1829 121 6 62 chr21 22991673 22991996 -21915574 - AluSx SINE Alu -7 305 1 4193 95 2 3 chr21 22992230 22992822 -21914748 - L1PA13 LINE L1 -4 6159 5569 928 70 44 19 chr21 22992826 22992984 -21914586 + L1P LINE L1 5258 5419 -744 1441 214 28 42 chr21 22993486 22993841 -21913729 - MLT1D LTR MaLR -25 480 131 1374 186 12 4 chr21 22993844 22994096 -21913474 - AluJo SINE Alu -58 254 1 551 177 31 0 chr21 22994096 22994192 -21913378 - MLT1D LTR MaLR -385 120 22 2080 112 6 13 chr21 22994807 22995120 -21912450 + AluSp SINE Alu 1 311 -2 267 246 29 36 chr21 22995434 22995572 -21911998 + HERV16 LTR ERVL 4559 4695 -301 235 232 24 61 chr21 22995893 22995975 -21911595 + LTR16B LTR ERVL 1 79 -385 2076 93 6 55 chr21 22996689 22997001 -21910569 + AluSq SINE Alu 1 297 -16 31 58 0 0 chr21 22997035 22997087 -21910483 + AT_rich Low_complexity Low_complexity 1 52 0 224 244 0 70 chr21 22997855 22997941 -21909629 - L2 LINE L2 -4 3268 3189 275 269 115 8 chr21 22998069 22998199 -21909371 - MLT1J LTR MaLR -41 470 327 280 229 105 19 chr21 22998298 22998403 -21909167 - MLT1J LTR MaLR -312 199 86 2208 82 3 38 chr21 22998572 22998891 -21908679 - AluSg SINE Alu 0 310 3 202 414 141 0 chr21 22999572 22999700 -21907870 - MER91A DNA MER1_type -20 176 31 2022 140 0 0 chr21 23000124 23000431 -21907139 - AluSx SINE Alu -5 307 1 276 206 73 0 chr21 23000731 23000799 -21906771 - MLT1J LTR MaLR -290 221 149 242 315 55 0 chr21 23001854 23001927 -21905643 + MIR SINE MIR 183 259 -3 21 0 0 0 chr21 23002606 23002627 -21904943 + AT_rich Low_complexity Low_complexity 1 21 0 2083 106 0 3 chr21 23003021 23003332 -21904238 - AluSx SINE Alu 0 310 1 728 199 0 0 chr21 23003332 23003473 -21904097 + L1PB4 LINE L1 6015 6155 -1 2225 186 60 17 chr21 23003508 23003987 -21903583 + MLT1D LTR MaLR 1 500 -5 1666 288 79 39 chr21 23004194 23005224 -21902346 - L2 LINE L2 -3 3310 2238 22 56 0 0 chr21 23005405 23005441 -21902129 + AT_rich Low_complexity Low_complexity 1 36 0 6397 37 0 1 chr21 23005838 23006600 -21900970 - L1PA5 LINE L1 -1 6153 5393 24 0 0 0 chr21 23007018 23007042 -21900528 + AT_rich Low_complexity Low_complexity 1 24 0 189 336 17 67 chr21 23007410 23007529 -21900041 - L2 LINE L2 -47 3266 3154 834 201 0 31 chr21 23008085 23008244 -21899326 - FRAM SINE Alu -20 156 3 23 33 0 0 chr21 23008248 23008278 -21899292 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr21 23010466 23010502 -21897068 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr21 23011341 23011370 -21896200 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr21 23011532 23011568 -21896002 + AT_rich Low_complexity Low_complexity 1 36 0 2172 115 0 7 chr21 23011845 23012166 -21895404 + AluSx SINE Alu 1 312 0 2044 139 0 10 chr21 23012839 23013148 -21894422 + AluSq SINE Alu 1 306 -7 202 306 28 0 chr21 23013166 23013238 -21894332 - L2 LINE L2 -15 3257 3184 2241 99 0 7 chr21 23014473 23014777 -21892793 - AluSc SINE Alu -7 302 1 254 243 27 0 chr21 23015063 23015137 -21892433 + (TA)n Simple_repeat Simple_repeat 1 76 0 1364 228 90 6 chr21 23015137 23015470 -21892100 - MLT1A1 LTR MaLR -4 361 1 180 0 0 0 chr21 23015513 23015533 -21892037 + (TA)n Simple_repeat Simple_repeat 2 21 0 744 278 90 3 chr21 23015946 23016245 -21891325 - L1ME3A LINE L1 -221 5949 5625 234 300 128 21 chr21 23016683 23016973 -21890597 - L1P5 LINE L1 -576 5575 5255 261 256 131 31 chr21 23017143 23017303 -21890267 - L1ME3A LINE L1 -1076 5070 4895 305 21 21 21 chr21 23017537 23017584 -21889986 + MADE1 DNA Mariner 34 80 0 1429 168 18 46 chr21 23017783 23018068 -21889502 + AluJo SINE Alu 6 282 -30 1228 264 62 81 chr21 23018245 23019022 -21888548 - L1ME3A LINE L1 -72 6893 6132 455 240 74 39 chr21 23019201 23019346 -21888224 - L1ME3A LINE L1 -3551 3390 3233 590 202 0 8 chr21 23019346 23019470 -21888100 - L1PB4 LINE L1 0 6156 6034 455 240 74 39 chr21 23019470 23019553 -21888017 - L1ME3A LINE L1 -3708 3233 3154 201 231 39 0 chr21 23019602 23019680 -21887890 + (TTAA)n Simple_repeat Simple_repeat 1 81 0 389 325 52 24 chr21 23019959 23020421 -21887149 - L1ME3A LINE L1 -4703 2419 1945 235 248 40 20 chr21 23020575 23020676 -21886894 - L1ME3A LINE L1 -4940 1483 1381 1861 123 0 44 chr21 23021081 23021398 -21886172 - AluSq SINE Alu -9 304 2 305 328 25 45 chr21 23021424 23021622 -21885948 - L1ME3A LINE L1 -1823 4323 4130 21 0 0 0 chr21 23021630 23021651 -21885919 + AT_rich Low_complexity Low_complexity 1 21 0 230 278 183 31 chr21 23021687 23022004 -21885566 - L1ME3A LINE L1 -2089 4057 3693 1830 243 164 19 chr21 23022308 23023077 -21884493 - L1ME2 LINE L1 -19 6079 5200 372 43 0 0 chr21 23023147 23023193 -21884377 + (TG)n Simple_repeat Simple_repeat 2 47 0 608 238 150 33 chr21 23023351 23023771 -21883799 - L1ME2 LINE L1 -4998 1072 604 223 157 29 0 chr21 23023813 23023883 -21883687 + (TA)n Simple_repeat Simple_repeat 2 73 0 1027 164 33 70 chr21 23024429 23024699 -21882871 - L1MB2 LINE L1 0 6171 5914 5903 226 18 24 chr21 23024758 23027123 -21880447 - L1MC1 LINE L1 0 6333 3985 2393 97 39 0 chr21 23027123 23027483 -21880087 - L1MA1 LINE L1 0 6302 5929 5903 226 18 24 chr21 23027483 23027852 -21879718 - L1MC1 LINE L1 -2348 3985 3615 800 165 8 0 chr21 23027852 23027979 -21879591 - MER70A LTR ERVL 0 472 345 1845 138 10 0 chr21 23028343 23028806 -21878764 + AluSx SINE Alu 1 466 0 2168 110 3 0 chr21 23029124 23029423 -21878147 - AluSp SINE Alu -13 300 1 24 32 0 0 chr21 23031090 23031121 -21876449 + AT_rich Low_complexity Low_complexity 1 31 0 564 154 130 0 chr21 23031484 23031607 -21875963 - L1MA10 LINE L1 0 6334 6196 38 51 0 0 chr21 23032351 23032410 -21875160 + AT_rich Low_complexity Low_complexity 1 59 0 200 305 34 76 chr21 23033119 23033237 -21874333 + MER5B DNA MER1_type 65 177 -1 219 36 0 0 chr21 23033388 23033416 -21874154 + (TG)n Simple_repeat Simple_repeat 2 29 0 380 309 151 57 chr21 23033870 23034327 -21873243 + MLT1J LTR MaLR 1 500 -11 455 283 55 111 chr21 23034435 23034742 -21872828 - L2 LINE L2 0 3313 3027 2092 107 3 21 chr21 23034742 23035033 -21872537 + AluSp SINE Alu 7 292 -21 455 283 55 111 chr21 23035033 23035086 -21872484 - L2 LINE L2 -286 3027 2973 774 189 170 0 chr21 23035086 23035245 -21872325 + L1PA16 LINE L1 5972 6157 -9 202 393 68 12 chr21 23035275 23035438 -21872132 + L2 LINE L2 2911 3082 -190 1599 234 52 30 chr21 23035924 23036365 -21871205 - MLT1D LTR MaLR -51 454 4 778 257 16 11 chr21 23036990 23037173 -21870397 - MER5A DNA MER1_type -5 184 1 1511 266 150 6 chr21 23038450 23038976 -21868594 - MLT2E LTR ERVL -25 603 2 216 67 0 0 chr21 23039102 23039132 -21868438 + (TA)n Simple_repeat Simple_repeat 1 30 0 254 284 18 9 chr21 23039162 23039271 -21868299 + (TA)n Simple_repeat Simple_repeat 1 110 0 2307 94 0 0 chr21 23039856 23040165 -21867405 + AluY SINE Alu 1 309 -2 1131 108 25 0 chr21 23040165 23040322 -21867248 - THE1C LTR MaLR -214 161 1 1277 227 56 63 chr21 23041922 23042336 -21865234 + L1M4 LINE L1 13 423 -6119 1213 226 33 60 chr21 23042337 23042767 -21864803 + LTR52 LTR ERVL 2 419 -2 3577 259 51 33 chr21 23042773 23043045 -21864525 + LTR52-int LTR ERVL 8 274 -3295 1622 129 4 19 chr21 23043045 23043301 -21864269 - AluSc SINE Alu -13 296 45 3577 259 51 33 chr21 23043301 23044972 -21862598 + LTR52-int LTR ERVL 274 2089 -1480 3318 236 54 58 chr21 23045074 23045375 -21862195 + LTR52-int LTR ERVL 2099 2400 -3285 2229 103 3 0 chr21 23045375 23045677 -21861893 + AluSg SINE Alu 1 303 -7 3318 236 54 58 chr21 23045677 23046400 -21861170 + LTR52-int LTR ERVL 2400 3118 -2567 23 0 0 0 chr21 23046540 23046563 -21861007 + AT_rich Low_complexity Low_complexity 1 23 0 189 171 0 0 chr21 23047423 23047458 -21860112 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 1989 131 0 64 chr21 23048420 23048780 -21858790 + MER1B DNA MER1_type 1 337 0 1469 176 24 82 chr21 23048850 23049174 -21858396 + MLT1A2 LTR MaLR 6 307 -67 1824 68 0 4 chr21 23049174 23049442 -21858128 + L1PA7 LINE L1 5901 6167 0 1469 176 24 82 chr21 23049442 23049496 -21858074 + MLT1A2 LTR MaLR 307 363 -11 1132 243 74 84 chr21 23050028 23050527 -21857043 + MLT1D LTR MaLR 2 495 -10 569 245 77 81 chr21 23051173 23051434 -21856136 - MIR SINE MIR -1 261 2 33 80 0 0 chr21 23051830 23051905 -21855665 + AT_rich Low_complexity Low_complexity 1 75 0 1075 212 5 5 chr21 23053790 23054007 -21853563 + MER20 DNA MER1_type 1 217 -2 821 83 0 0 chr21 23054045 23054154 -21853416 - L1PA13 LINE L1 -251 5912 5804 28 29 0 0 chr21 23056859 23056894 -21850676 + AT_rich Low_complexity Low_complexity 1 35 0 210 208 0 0 chr21 23057182 23057230 -21850340 + (TG)n Simple_repeat Simple_repeat 1 48 0 195 188 0 0 chr21 23058207 23058255 -21849315 + (TG)n Simple_repeat Simple_repeat 1 48 0 457 231 26 51 chr21 23058485 23058641 -21848929 - MER119 DNA MER1_type 0 583 432 675 264 92 4 chr21 23058657 23058884 -21848686 - MER119 DNA MER1_type -266 317 71 1961 88 0 15 chr21 23059310 23059572 -21847998 + AluY SINE Alu 43 300 -11 26 0 0 0 chr21 23060284 23060310 -21847260 + AT_rich Low_complexity Low_complexity 1 26 0 1316 159 68 9 chr21 23061698 23062121 -21845449 - L1MA9 LINE L1 -2 6310 5780 251 95 0 0 chr21 23062134 23062176 -21845394 + MADE1 DNA Mariner 1 42 -38 212 196 0 18 chr21 23062177 23062233 -21845337 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 421 160 107 0 chr21 23062233 23062308 -21845262 - L1MA9 LINE L1 -519 5793 5711 357 327 33 26 chr21 23062337 23062490 -21845080 + MIR SINE MIR 64 217 -45 295 326 100 11 chr21 23062881 23063071 -21844499 + MIR SINE MIR 20 226 -36 556 184 44 132 chr21 23063632 23063858 -21843712 + MLT2D LTR ERVL 238 409 -5 1505 260 35 20 chr21 23064094 23064551 -21843019 + MLT1C LTR MaLR 1 464 -3 22 35 0 0 chr21 23064653 23064682 -21842888 + AT_rich Low_complexity Low_complexity 1 29 0 790 133 0 16 chr21 23064865 23064993 -21842577 + L1PA15 LINE L1 6034 6159 -6 418 264 111 0 chr21 23065333 23065477 -21842093 + L2 LINE L2 2444 2603 -711 350 180 0 0 chr21 23065479 23065540 -21842030 + MLT1C LTR MaLR 390 450 -17 378 367 44 20 chr21 23065540 23065788 -21841782 + L2 LINE L2 3033 3286 -27 921 251 50 0 chr21 23066339 23066618 -21840952 + L1MA4 LINE L1 6005 6297 -3 2446 47 7 3 chr21 23066847 23067144 -21840426 - AluY SINE Alu -13 298 1 510 43 0 149 chr21 23067255 23067308 -21840262 - MADE1 DNA Mariner 0 80 45 2257 84 10 0 chr21 23067308 23067604 -21839966 + AluY SINE Alu 1 299 -12 510 43 0 149 chr21 23067604 23067644 -21839926 - MADE1 DNA Mariner -35 45 1 32 0 0 0 chr21 23067790 23067822 -21839748 + AT_rich Low_complexity Low_complexity 1 32 0 1448 196 23 40 chr21 23067822 23068123 -21839447 - AluJo SINE Alu -16 296 1 4954 150 14 4 chr21 23068155 23068968 -21838602 - L1PA16 LINE L1 -9 6157 5337 2160 198 48 54 chr21 23068970 23069080 -21838490 + L1MA9 LINE L1 5635 5744 -568 2246 102 3 3 chr21 23069080 23069385 -21838185 + AluSx SINE Alu 1 305 -7 2160 198 48 54 chr21 23069385 23069429 -21838141 + L1MA9 LINE L1 5744 5787 -525 348 24 0 0 chr21 23069429 23069470 -21838100 + (TG)n Simple_repeat Simple_repeat 1 41 0 2160 198 48 54 chr21 23069470 23069957 -21837613 + L1MA9 LINE L1 5787 6273 -39 250 260 10 10 chr21 23070044 23070144 -21837426 + L1MEd LINE L1 968 1067 -5052 1127 203 18 101 chr21 23070146 23070472 -21837098 + AluSx SINE Alu 1 299 -3 345 301 70 39 chr21 23070537 23070766 -21836804 + L1MEd LINE L1 1146 1381 -4929 4235 103 72 2 chr21 23070789 23071432 -21836138 - LTR12 LTR ERV1 0 688 1 711 217 23 60 chr21 23071513 23071812 -21835758 - pTR5 LTR ERV1 -1410 1028 741 1672 198 83 95 chr21 23072378 23073000 -21834570 - LTR9B LTR ERV1 0 644 29 2635 48 0 0 chr21 23073000 23073311 -21834259 - AluY SINE Alu 0 311 1 1672 198 83 95 chr21 23073311 23073340 -21834230 - LTR9B LTR ERV1 -615 29 1 22 0 0 0 chr21 23073591 23073613 -21833957 + AT_rich Low_complexity Low_complexity 1 22 0 1013 264 77 19 chr21 23073614 23073978 -21833592 - L1MC4a LINE L1 -1 7807 7423 314 231 149 45 chr21 23074291 23074425 -21833145 - HsTC2 DNA Tc2 -1714 184 37 456 194 41 0 chr21 23075221 23075319 -21832251 - MER94 DNA DNA -23 111 10 509 251 74 83 chr21 23075577 23075813 -21831757 + MIR SINE MIR 13 241 -21 1873 201 71 13 chr21 23075827 23076221 -21831349 + MER47B DNA MER2_type 1 417 -1 755 314 92 12 chr21 23076519 23076857 -21830713 + L2 LINE L2 2442 2806 -508 21 0 0 0 chr21 23076893 23076914 -21830656 + AT_rich Low_complexity Low_complexity 1 21 0 3888 103 19 7 chr21 23076915 23077275 -21830295 - L1PB1 LINE L1 -1 6150 5779 468 0 0 0 chr21 23077275 23077327 -21830243 + (TA)n Simple_repeat Simple_repeat 2 53 0 3888 103 19 7 chr21 23077327 23077559 -21830011 - L1PB1 LINE L1 -372 5779 5551 4617 124 11 81 chr21 23077597 23078437 -21829133 - LTR25 LTR ERV1 -13 781 1 4979 187 33 3 chr21 23078437 23079560 -21828010 - L1PB1 LINE L1 -588 5563 4394 216 0 0 0 chr21 23079560 23079584 -21827986 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 4979 187 33 3 chr21 23079584 23079803 -21827767 - L1PB1 LINE L1 -1757 4394 4183 271 360 69 15 chr21 23079811 23080014 -21827556 + L2 LINE L2 2843 3056 -257 2109 117 13 0 chr21 23080302 23080601 -21826969 - AluSg SINE Alu -7 303 1 319 200 0 0 chr21 23082428 23082483 -21825087 + LTR40a LTR ERVL 465 519 0 679 279 133 9 chr21 23082498 23082814 -21824756 + HERVL40 LTR ERVL 19 373 -5157 4439 27 2 0 chr21 23082848 23083368 -21824202 + L1PA3 LINE L1 5632 6152 -3 378 225 0 0 chr21 23083514 23083585 -21823985 + HERVL40 LTR ERVL 476 546 -4984 989 303 75 32 chr21 23083638 23084325 -21823245 + HERVL40 LTR ERVL 564 1297 -4233 2775 20 0 0 chr21 23085853 23086158 -21821412 - AluY SINE Alu -6 305 1 671 307 66 23 chr21 23086914 23087041 -21820529 + MLT1G LTR MaLR 1 121 -469 1450 205 33 46 chr21 23087041 23087436 -21820134 - MLT1B LTR MaLR 0 390 1 671 307 66 23 chr21 23087436 23087565 -21820005 + MLT1G LTR MaLR 121 268 -322 212 286 107 0 chr21 23087785 23087841 -21819729 + L2 LINE L2 2108 2169 -1145 21 0 0 0 chr21 23087998 23088019 -21819551 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr21 23088273 23088302 -21819268 + AT_rich Low_complexity Low_complexity 1 29 0 2074 134 0 6 chr21 23088306 23088619 -21818951 + AluSx SINE Alu 1 311 -1 726 191 7 0 chr21 23089735 23089876 -21817694 + FLAM_C SINE Alu 2 143 0 26 30 0 0 chr21 23089980 23090013 -21817557 + AT_rich Low_complexity Low_complexity 1 33 0 1851 176 3 3 chr21 23090192 23090494 -21817076 - AluJb SINE Alu -10 302 1 288 204 10 20 chr21 23090775 23090873 -21816697 + (TA)n Simple_repeat Simple_repeat 2 98 0 2636 87 26 3 chr21 23091882 23092262 -21815308 + L1PA13 LINE L1 5770 6158 -5 235 300 92 46 chr21 23092639 23092769 -21814801 - MLT1L LTR MaLR -322 293 158 27 0 0 0 chr21 23093962 23093989 -21813581 + AT_rich Low_complexity Low_complexity 1 27 0 1629 236 17 6 chr21 23094060 23094421 -21813149 + MLT1A1 LTR MaLR 1 365 0 195 69 0 0 chr21 23094611 23094640 -21812930 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr21 23094768 23094798 -21812772 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 23095339 23095365 -21812205 + AT_rich Low_complexity Low_complexity 1 26 0 512 324 95 57 chr21 23095724 23096390 -21811180 + L1M4 LINE L1 3745 4435 -1711 927 314 55 39 chr21 23096480 23096865 -21810705 + LTR16A LTR ERVL 60 450 0 400 284 55 8 chr21 23096868 23096995 -21810575 + HERV16 LTR ERVL 4 136 -4860 422 320 0 16 chr21 23097120 23097248 -21810322 + MER5A DNA MER1_type 46 171 -18 363 313 18 0 chr21 23097441 23097526 -21810044 + HERV16 LTR ERVL 559 648 -4348 1231 123 27 27 chr21 23097526 23097745 -21809825 - L1PA13 LINE L1 -2 6161 5943 363 313 18 0 chr21 23097745 23097771 -21809799 + HERV16 LTR ERVL 648 672 -4324 1772 284 60 8 chr21 23097771 23098288 -21809282 - REP3 LTR ERV 0 562 19 294 350 10 0 chr21 23098453 23098556 -21809014 + LTR16A LTR ERVL 341 444 -6 2960 180 20 5 chr21 23098811 23099395 -21808175 + L1MA9 LINE L1 5720 6312 0 369 307 16 0 chr21 23099866 23099993 -21807577 + L1MC5 LINE L1 7785 7913 -48 330 257 138 50 chr21 23100059 23100378 -21807192 + L1M4 LINE L1 5023 5369 -777 51 92 0 0 chr21 23100486 23100628 -21806942 + AT_rich Low_complexity Low_complexity 1 142 0 259 317 17 8 chr21 23101013 23101133 -21806437 + L1M4 LINE L1 3725 3845 -2301 529 174 11 0 chr21 23101383 23101475 -21806095 - Tigger5 DNA MER2_type 0 2323 2231 381 277 11 0 chr21 23101853 23101947 -21805623 - LTR40b LTR ERVL 0 462 368 530 314 76 22 chr21 23101951 23102321 -21805249 - LTR40a LTR ERVL -122 397 8 529 250 17 0 chr21 23102344 23102460 -21805110 + MER58 DNA MER1_type 169 286 -2134 39 106 0 0 chr21 23102769 23102920 -21804650 + AT_rich Low_complexity Low_complexity 1 151 0 8322 193 33 8 chr21 23103148 23105946 -21801624 - L1PA16 LINE L1 -11 6155 3283 487 308 157 7 chr21 23106101 23106542 -21801028 - Charlie7 DNA MER1_type -369 2243 1737 1269 145 127 11 chr21 23106832 23107115 -21800455 - L1MA3 LINE L1 0 6305 5990 442 313 62 17 chr21 23107180 23107420 -21800150 - Charlie7 DNA MER1_type -2303 309 59 329 284 121 35 chr21 23107739 23107971 -21799599 - MERVL LTR ERVL -2933 2552 2301 225 314 43 0 chr21 23108585 23108655 -21798915 - MLT1J LTR MaLR -228 283 211 308 235 101 17 chr21 23108669 23108788 -21798782 - L1ME3A LINE L1 -7 6163 6035 1244 187 102 60 chr21 23108803 23109135 -21798435 - MLT1A1 LTR MaLR -19 346 1 790 327 43 12 chr21 23109248 23109664 -21797906 - L1ME3A LINE L1 -230 5932 5504 286 315 33 6 chr21 23109668 23109849 -21797721 + L1ME LINE L1 726 911 -5159 2056 140 7 0 chr21 23109884 23110192 -21797378 - AluSx SINE Alu 0 312 3 231 256 15 0 chr21 23110206 23110283 -21797287 + L1ME LINE L1 906 984 -5099 491 284 45 77 chr21 23110299 23110827 -21796743 + L1ME LINE L1 952 1509 -4615 748 150 0 0 chr21 23110827 23110940 -21796630 + AluSq/x SINE Alu 1 113 -200 27 0 0 0 chr21 23110953 23110980 -21796590 + AT_rich Low_complexity Low_complexity 1 27 0 539 121 10 0 chr21 23110983 23111082 -21796488 + (TA)n Simple_repeat Simple_repeat 1 100 0 1823 134 0 4 chr21 23111235 23111504 -21796066 - AluSx SINE Alu -44 268 1 22 88 0 0 chr21 23111965 23112022 -21795548 + AT_rich Low_complexity Low_complexity 1 57 0 27 62 0 0 chr21 23113565 23113613 -21793957 + AT_rich Low_complexity Low_complexity 1 48 0 2202 101 7 0 chr21 23113841 23114137 -21793433 + AluSp SINE Alu 1 298 -15 181 321 0 0 chr21 23114323 23114376 -21793194 + L2 LINE L2 3203 3255 -17 289 333 201 11 chr21 23114385 23114574 -21792996 + MIR SINE MIR 23 247 -15 27 29 0 0 chr21 23114623 23114657 -21792913 + AT_rich Low_complexity Low_complexity 1 34 0 1960 129 29 40 chr21 23114727 23115106 -21792464 + THE1C LTR MaLR 1 375 0 1878 164 21 9 chr21 23115400 23115730 -21791840 + MER47A DNA MER2_type 33 366 0 2731 102 0 0 chr21 23116271 23116635 -21790935 - THE1B LTR MaLR 0 364 1 261 255 106 0 chr21 23117581 23117675 -21789895 + L1MC4 LINE L1 7935 8038 -4 22 35 0 0 chr21 23117723 23117752 -21789818 + AT_rich Low_complexity Low_complexity 1 29 0 1711 153 68 34 chr21 23118722 23119107 -21788463 - L1MA8 LINE L1 0 6291 5894 257 301 12 0 chr21 23119271 23119354 -21788216 - MER103 DNA DNA -10 156 73 38 39 0 0 chr21 23119694 23119746 -21787824 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr21 23120013 23120035 -21787535 + AT_rich Low_complexity Low_complexity 1 22 0 272 264 48 32 chr21 23120331 23120456 -21787114 - MLT1G LTR MaLR 0 590 464 506 239 54 36 chr21 23120539 23120706 -21786864 + MER58C DNA MER1_type 31 200 -15 24 0 0 0 chr21 23120759 23120783 -21786787 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr21 23120905 23120940 -21786630 + AT_rich Low_complexity Low_complexity 1 35 0 276 100 0 0 chr21 23121064 23121104 -21786466 + (TA)n Simple_repeat Simple_repeat 2 41 0 530 256 20 98 chr21 23121575 23121778 -21785792 - MER5A DNA MER1_type -1 188 2 663 188 80 17 chr21 23122388 23122564 -21785006 - MER53 DNA DNA -1 188 2 523 279 203 47 chr21 23122676 23122848 -21784722 - MLT2E LTR ERVL 0 628 484 2101 139 7 0 chr21 23122848 23123158 -21784412 + AluSx SINE Alu 1 312 0 523 279 203 47 chr21 23123158 23123261 -21784309 - MLT2E LTR ERVL -144 484 310 1590 190 22 25 chr21 23123406 23123770 -21783800 - MLT1A1 LTR MaLR 0 365 3 30 0 0 0 chr21 23124484 23124514 -21783056 + AT_rich Low_complexity Low_complexity 1 30 0 3734 69 4 0 chr21 23124514 23125004 -21782566 - L1PA7 LINE L1 -3 6151 5660 1883 155 7 3 chr21 23125009 23125293 -21782277 - AluSx SINE Alu -27 285 1 24 19 9 0 chr21 23125346 23125423 -21782147 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr21 23125582 23125603 -21781967 + AT_rich Low_complexity Low_complexity 1 21 0 24 91 0 0 chr21 23125773 23125839 -21781731 + AT_rich Low_complexity Low_complexity 1 66 0 229 387 21 0 chr21 23126240 23126333 -21781237 - L2 LINE L2 -3 3269 3175 1965 160 0 0 chr21 23126518 23126825 -21780745 + AluSq SINE Alu 1 307 -6 309 356 67 0 chr21 23127026 23127175 -21780395 - L2 LINE L2 -602 2712 2554 1465 233 52 0 chr21 23127491 23127838 -21779732 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr21 23128310 23128338 -21779232 + AT_rich Low_complexity Low_complexity 1 28 0 189 236 169 22 chr21 23128725 23128814 -21778756 + MER5A DNA MER1_type 10 111 -78 25 0 0 0 chr21 23128952 23128977 -21778593 + AT_rich Low_complexity Low_complexity 1 25 0 236 335 146 16 chr21 23129718 23129903 -21777667 + MIR SINE MIR 5 213 -49 259 191 29 29 chr21 23129927 23129995 -21777575 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 870 165 89 18 chr21 23130200 23130384 -21777186 - THE1C LTR MaLR 0 375 177 * 915 198 6 31 chr21 23130376 23130634 -21776936 - THE1C LTR MaLR -116 248 1 24 0 0 0 chr21 23131737 23131761 -21775809 + AT_rich Low_complexity Low_complexity 1 24 0 1882 201 11 6 chr21 23132547 23132910 -21774660 + MLT1A1 LTR MaLR 1 365 0 382 39 19 0 chr21 23133177 23133229 -21774341 - MADE1 DNA Mariner 0 80 28 1162 146 68 0 chr21 23135806 23136025 -21771545 + L1MA9 LINE L1 6073 6306 -6 55 76 0 0 chr21 23136290 23136408 -21771162 + AT_rich Low_complexity Low_complexity 1 118 0 883 87 0 36 chr21 23136943 23137081 -21770489 + FLAM_C SINE Alu 1 133 0 1613 214 25 17 chr21 23137115 23137475 -21770095 + MLT2B1 LTR ERVL 158 520 0 31 0 0 0 chr21 23137764 23137795 -21769775 + AT_rich Low_complexity Low_complexity 1 31 0 199 321 19 0 chr21 23138211 23138264 -21769306 + MIR SINE MIR 36 89 -119 25 31 0 0 chr21 23138310 23138342 -21769228 + AT_rich Low_complexity Low_complexity 1 32 0 942 104 7 0 chr21 23138347 23138491 -21769079 + AluSc SINE Alu 160 304 -5 180 0 0 0 chr21 23138494 23138514 -21769056 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2829 24 0 3 chr21 23139430 23139768 -21767802 + L1PA2 LINE L1 5819 6155 0 2019 128 3 6 chr21 23140117 23140430 -21767140 + AluSx SINE Alu 1 312 0 1244 167 48 0 chr21 23141342 23141594 -21765976 - L1MA4A LINE L1 -12 6291 6028 1679 153 58 46 chr21 23141742 23142088 -21765482 + MLT2C1 LTR ERVL 6 355 -42 1554 78 10 0 chr21 23144126 23144332 -21763238 - L1PA11 LINE L1 -300 5874 5667 2076 78 27 7 chr21 23144332 23144625 -21762945 + L1PA11 LINE L1 5873 6172 -2 2132 237 64 42 chr21 23145005 23145772 -21761798 - L1ME1 LINE L1 0 6166 5383 * 30335 98 13 10 chr21 23145768 23150062 -21757508 - L1PA7 LINE L1 0 6154 1839 2011 138 3 3 chr21 23150062 23150352 -21757218 + AluSc SINE Alu 1 290 -19 30335 98 13 10 chr21 23150352 23151403 -21756167 - L1PA7 LINE L1 -4315 1839 793 3770 187 19 17 chr21 23151555 23152380 -21755190 + L1MA8 LINE L1 5461 6287 -4 2493 222 69 92 chr21 23152531 23153179 -21754391 - L1MCb LINE L1 -4090 2474 1812 189 74 0 0 chr21 23153179 23153206 -21754364 + (TG)n Simple_repeat Simple_repeat 2 28 0 2493 222 69 92 chr21 23153206 23154456 -21753114 - L1MCb LINE L1 -4752 1812 618 738 294 55 3 chr21 23154454 23154794 -21752776 - L1MEc LINE L1 -2832 3383 2991 * 525 25 38 13 chr21 23154800 23154879 -21752691 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 4539 102 25 9 chr21 23154879 23155550 -21752020 - L1PA11 LINE L1 -7 6167 5483 738 294 55 3 chr21 23155550 23155751 -21751819 - L1MEc LINE L1 -3224 2991 2802 2511 274 85 31 chr21 23155772 23156850 -21750720 - L1MEc LINE L1 -5226 1170 35 23 0 0 0 chr21 23157413 23157436 -21750134 + AT_rich Low_complexity Low_complexity 1 23 0 191 322 116 16 chr21 23157629 23157750 -21749820 + L2 LINE L2 2516 2648 -666 2283 158 62 2 chr21 23158010 23158414 -21749156 + MSTA LTR MaLR 1 428 0 8642 187 28 7 chr21 23158415 23160031 -21747539 + MSTA-int LTR MaLR 2 1651 0 2444 137 70 5 chr21 23160031 23160433 -21747137 + MSTA LTR MaLR 1 428 0 223 279 223 17 chr21 23160808 23161041 -21746529 + L2 LINE L2 1485 1765 -1549 215 326 36 94 chr21 23161041 23161372 -21746198 + L2 LINE L2 2266 2577 -737 621 286 118 20 chr21 23161399 23161688 -21745882 + L2 LINE L2 1830 2170 -1144 195 42 0 0 chr21 23161688 23161712 -21745858 + (TC)n Simple_repeat Simple_repeat 1 24 0 621 286 118 20 chr21 23161712 23161821 -21745749 + L2 LINE L2 2170 2267 -1047 477 144 89 0 chr21 23162218 23162308 -21745262 + MER4A LTR ERV1 1 98 -566 1072 147 17 186 chr21 23162308 23162724 -21744846 + MER4A LTR ERV1 261 664 0 2203 122 0 0 chr21 23163811 23164115 -21743455 - AluSg SINE Alu -6 304 1 36 0 0 0 chr21 23164286 23164322 -21743248 + AT_rich Low_complexity Low_complexity 1 36 0 44 70 0 0 chr21 23164454 23164540 -21743030 + AT_rich Low_complexity Low_complexity 1 86 0 2883 151 48 58 chr21 23164602 23165206 -21742364 + MER7C DNA MER2_type 1 598 -4 2030 104 11 0 chr21 23165538 23165807 -21741763 + AluSg SINE Alu 24 295 -15 1626 182 4 4 chr21 23166251 23166515 -21741055 - AluJo SINE Alu -45 267 4 2055 127 30 0 chr21 23168223 23168523 -21739047 + AluSx SINE Alu 1 309 -3 1799 205 66 58 chr21 23168738 23168775 -21738795 - MLT2B1 LTR ERVL -3 517 482 207 69 0 0 chr21 23168775 23168804 -21738766 + (TA)n Simple_repeat Simple_repeat 1 29 0 1799 205 66 58 chr21 23168804 23169279 -21738291 - MLT2B1 LTR ERVL -38 482 1 459 219 121 79 chr21 23169401 23169616 -21737954 + L2 LINE L2 3090 3313 0 2545 68 0 0 chr21 23171690 23171999 -21735571 - AluY SINE Alu -2 309 1 22 0 0 0 chr21 23172170 23172192 -21735378 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 23172310 23172334 -21735236 + AT_rich Low_complexity Low_complexity 1 24 0 318 151 14 58 chr21 23172593 23172732 -21734838 + (TTAA)n Simple_repeat Simple_repeat 3 135 0 1556 237 102 18 chr21 23172762 23173273 -21734297 - MER74A LTR ERVL 0 558 5 1426 102 0 0 chr21 23174591 23174778 -21732792 - AluSg/x SINE Alu -1 311 125 3346 136 17 11 chr21 23174908 23175432 -21732138 - MER1A DNA MER1_type 0 527 1 1530 198 17 0 chr21 23175494 23175787 -21731783 - AluJo SINE Alu -14 298 1 5244 156 33 9 chr21 23175840 23176769 -21730801 + L1MC1 LINE L1 5377 6328 -5 2242 113 3 3 chr21 23176771 23177081 -21730489 + AluSq SINE Alu 1 310 -3 341 312 63 90 chr21 23177368 23177459 -21730111 - L1ME3A LINE L1 -304 5866 5774 2137 119 10 7 chr21 23177459 23177762 -21729808 - AluSx SINE Alu -7 305 2 341 312 63 90 chr21 23177762 23178008 -21729562 - L1ME3A LINE L1 -396 5774 5538 556 39 39 0 chr21 23178008 23178085 -21729485 + MADE1 DNA Mariner 1 80 0 341 312 63 90 chr21 23178085 23178124 -21729446 - L1ME3A LINE L1 -632 5538 5499 954 170 0 0 chr21 23178185 23178332 -21729238 + FRAM SINE Alu 3 149 -27 373 270 91 108 chr21 23178615 23179218 -21728352 - L1ME3A LINE L1 -1049 5097 4505 594 273 101 40 chr21 23179581 23179878 -21727692 - MLT1H LTR MaLR -224 325 11 2016 135 3 7 chr21 23180128 23180432 -21727138 - AluSx SINE Alu -9 303 1 988 185 0 0 chr21 23181443 23181605 -21725965 + FRAM SINE Alu 1 159 -17 1289 189 41 59 chr21 23182001 23182339 -21725231 - MLT2B3 LTR ERVL 0 554 223 1269 171 40 18 chr21 23182340 23182568 -21725002 - MSTA LTR MaLR -195 233 1 22 0 0 0 chr21 23183781 23183803 -21723767 + AT_rich Low_complexity Low_complexity 1 22 0 647 259 23 88 chr21 23185446 23185715 -21721855 - L1ME1 LINE L1 -115 6051 5766 1570 207 34 8 chr21 23185715 23186068 -21721502 - MLT1A1 LTR MaLR -3 362 1 2098 84 3 74 chr21 23186074 23186397 -21721173 + AluSg SINE Alu 1 300 -10 647 259 23 88 chr21 23186397 23186471 -21721099 - L1ME1 LINE L1 -405 5761 5724 546 235 87 61 chr21 23186476 23186706 -21720864 + MER101B LTR ERV1 1 236 -334 1703 250 19 23 chr21 23186796 23187284 -21720286 + LTR51 LTR ERV1 222 923 0 258 194 0 90 chr21 23187740 23187807 -21719763 + LTR57-int LTR ERVL 291 351 -4992 311 256 62 39 chr21 23188117 23188246 -21719324 + MER34 LTR ERV1 121 252 -290 228 35 0 0 chr21 23188250 23188279 -21719291 + (TA)n Simple_repeat Simple_repeat 2 30 0 253 136 0 0 chr21 23188300 23188344 -21719226 + MER34 LTR ERV1 315 358 -184 1182 276 63 4 chr21 23188423 23188916 -21718654 - L1MEc LINE L1 -5205 1191 670 722 284 49 86 chr21 23189107 23189455 -21718115 - L1MEc LINE L1 -6026 370 36 25 31 0 0 chr21 23189457 23189489 -21718081 + AT_rich Low_complexity Low_complexity 1 32 0 424 255 93 118 chr21 23189566 23189638 -21717932 + MIR SINE MIR 39 111 -151 2060 133 0 13 chr21 23189638 23189939 -21717631 + AluSx SINE Alu 14 310 -2 424 255 93 118 chr21 23189939 23190070 -21717500 + MIR SINE MIR 111 237 -25 2302 93 3 0 chr21 23190128 23190428 -21717142 + AluSp SINE Alu 1 301 -12 341 392 16 5 chr21 23190608 23190802 -21716768 - MIR SINE MIR -57 205 10 264 259 38 46 chr21 23190831 23190962 -21716608 - MER94 DNA DNA 0 134 5 2342 90 3 0 chr21 23191423 23191722 -21715848 - AluSx SINE Alu -12 300 1 616 319 62 47 chr21 23192052 23192438 -21715132 + L2 LINE L2 2922 3313 0 1147 137 19 39 chr21 23193349 23193554 -21714016 - MSTA LTR MaLR -201 227 27 2392 138 36 17 chr21 23194130 23194522 -21713048 + MSTA LTR MaLR 1 403 -25 3634 112 22 9 chr21 23194522 23195076 -21712494 - L1PA10 LINE L1 0 6168 5608 2392 138 36 17 chr21 23195076 23195103 -21712467 + MSTA LTR MaLR 403 428 0 223 333 142 7 chr21 23195110 23195251 -21712319 - MIR SINE MIR -56 206 47 4543 258 47 19 chr21 23195284 23196985 -21710585 + L1M4 LINE L1 3202 4949 -1197 1360 197 0 14 chr21 23197055 23197345 -21710225 + L1MA10 LINE L1 6048 6333 -1 836 28 0 19 chr21 23197644 23197752 -21709818 - L1PA4 LINE L1 0 6155 6050 229 274 47 75 chr21 23198038 23198144 -21709426 - L2 LINE L2 -1 3271 3169 656 245 29 86 chr21 23198258 23198503 -21709067 + MIR SINE MIR 11 241 -21 1342 243 21 6 chr21 23199301 23199634 -21707936 - MER58B DNA MER1_type 0 341 4 186 205 0 0 chr21 23199993 23200032 -21707538 + MER5B DNA MER1_type 140 178 0 21 0 0 0 chr21 23200136 23200157 -21707413 + AT_rich Low_complexity Low_complexity 1 21 0 808 284 67 11 chr21 23200599 23200682 -21706888 - MER110 LTR ERV1 -2 489 412 288 120 0 0 chr21 23200682 23200732 -21706838 + (CA)n Simple_repeat Simple_repeat 2 51 0 808 284 67 11 chr21 23200732 23200933 -21706637 - MER110 LTR ERV1 -79 412 189 551 268 7 7 chr21 23201034 23201176 -21706394 - MER110 LTR ERV1 -333 158 17 2530 171 16 7 chr21 23201292 23201730 -21705840 - MSTB2 LTR MaLR -3 454 13 3956 244 115 45 chr21 23202020 23203693 -21703877 + L1MB8 LINE L1 50 1833 -5022 1115 255 35 88 chr21 23203706 23204299 -21703271 + L1MB8 LINE L1 2140 2701 -4437 326 299 56 73 chr21 23204331 23204446 -21703124 + L1MB8 LINE L1 2558 2673 -4284 1210 251 16 47 chr21 23204446 23204514 -21703056 - MLT1A2 LTR MaLR 0 374 305 2342 88 0 0 chr21 23204514 23204808 -21702762 + AluY SINE Alu 1 294 -17 1210 251 16 47 chr21 23204808 23205122 -21702448 - MLT1A2 LTR MaLR -69 305 4 326 299 56 73 chr21 23205122 23205361 -21702209 + L1MB8 LINE L1 2673 2906 -4051 3552 198 49 128 chr21 23205394 23205570 -21702000 + L1MB8 LINE L1 4529 4717 -2272 2227 117 0 0 chr21 23205570 23205869 -21701701 + AluSx SINE Alu 1 299 -13 3552 198 49 128 chr21 23205869 23208360 -21699210 + L1MB8 LINE L1 4717 6980 -9 1011 175 45 132 chr21 23208369 23208724 -21698846 + MLT1D LTR MaLR 177 500 -5 885 266 22 52 chr21 23208738 23209141 -21698429 + MLT2C1 LTR ERVL 3 393 -4 1136 268 73 64 chr21 23209145 23209723 -21697847 - MER110-int LTR ERV1 -20 4627 4045 21 0 0 0 chr21 23210015 23210036 -21697534 + AT_rich Low_complexity Low_complexity 1 21 0 241 170 0 0 chr21 23210094 23210141 -21697429 + L1MA8 LINE L1 6062 6108 -183 2340 209 103 7 chr21 23210144 23210783 -21696787 - Tigger7 DNA MER2_type -6 2581 10 946 110 21 63 chr21 23210794 23210985 -21696585 + L1MA8 LINE L1 6106 6288 -3 559 239 18 60 chr21 23211044 23211211 -21696359 - MER110-int LTR ERV1 -1017 3630 3471 4454 244 54 32 chr21 23211233 23212617 -21694953 - MER110-int LTR ERV1 -1520 3127 1714 767 255 34 14 chr21 23212826 23213034 -21694536 - MER110-int LTR ERV1 -4371 276 65 341 205 13 26 chr21 23214885 23214963 -21692607 - MER110-int LTR ERV1 -4570 77 1 1630 251 59 14 chr21 23215010 23215449 -21692121 - MER110 LTR ERV1 -30 461 3 251 360 41 14 chr21 23216394 23216541 -21691029 - MIR SINE MIR -59 203 53 297 151 0 0 chr21 23216612 23216665 -21690905 + (CAT)n Simple_repeat Simple_repeat 1 53 0 2658 178 14 87 chr21 23216937 23217035 -21690535 - L1MC2 LINE L1 -9 6335 6231 2458 72 13 0 chr21 23217035 23217340 -21690230 - AluY SINE Alu 0 311 3 2658 178 14 87 chr21 23217340 23217908 -21689662 - L1MC2 LINE L1 -113 6231 5718 21 0 0 0 chr21 23219514 23219535 -21688035 + AT_rich Low_complexity Low_complexity 1 21 0 2276 94 3 0 chr21 23219556 23219853 -21687717 - AluSx SINE Alu -14 298 1 375 243 0 0 chr21 23220175 23220348 -21687222 + (GAGTG)n Simple_repeat Simple_repeat 5 177 0 373 228 84 81 chr21 23220438 23220824 -21686746 + MLT1H LTR MaLR 117 549 0 2103 86 48 0 chr21 23221536 23221826 -21685744 + AluSq SINE Alu 1 304 -9 22 70 0 0 chr21 23222091 23222134 -21685436 + AT_rich Low_complexity Low_complexity 1 43 0 203 281 0 0 chr21 23222138 23222152 -21685418 + A-rich Low_complexity Low_complexity 5 18 -50 1913 104 111 0 chr21 23222152 23222431 -21685139 + AluSg SINE Alu 1 310 0 203 281 0 0 chr21 23222431 23222480 -21685090 + A-rich Low_complexity Low_complexity 17 68 0 1502 138 4 8 chr21 23222674 23222914 -21684656 - LTR19C LTR ERV1 0 779 541 7451 186 8 10 chr21 23222916 23224232 -21683338 + HUERS-P3 LTR ERV1 5621 6934 -1985 2243 112 0 7 chr21 23225371 23225675 -21681895 + AluSg SINE Alu 4 305 -5 1014 211 18 86 chr21 23225979 23226259 -21681311 + HUERS-P3 LTR ERV1 8659 8919 0 4917 116 25 12 chr21 23226261 23226725 -21680845 + LTR19C LTR ERV1 1 480 -299 207 0 0 0 chr21 23226725 23226748 -21680822 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4917 116 25 12 chr21 23226748 23227052 -21680518 + LTR19C LTR ERV1 480 779 0 4175 49 11 2 chr21 23227421 23227947 -21679623 - L1PA6 LINE L1 -1 6153 5623 2244 60 0 11 chr21 23228333 23228656 -21678914 + AluY SINE Alu 1 320 0 22 35 0 0 chr21 23229075 23229104 -21678466 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 23229753 23229779 -21677791 + AT_rich Low_complexity Low_complexity 1 26 0 1032 183 21 5 chr21 23229925 23230111 -21677459 + L1PB3 LINE L1 5959 6147 -7 26 30 0 0 chr21 23230128 23230161 -21677409 + AT_rich Low_complexity Low_complexity 1 33 0 243 88 0 0 chr21 23230560 23230594 -21676976 + (T)n Simple_repeat Simple_repeat 1 34 0 206 224 41 92 chr21 23230606 23230704 -21676866 + L2 LINE L2 3136 3228 -44 296 351 9 18 chr21 23230899 23231010 -21676560 - L2 LINE L2 0 3313 3204 204 245 0 0 chr21 23231017 23231066 -21676504 + T-rich Low_complexity Low_complexity 1 49 0 589 342 79 22 chr21 23231174 23231524 -21676046 - L2 LINE L2 -267 3046 2671 1981 143 30 46 chr21 23231524 23231894 -21675676 + THE1B LTR MaLR 1 364 0 589 342 79 22 chr21 23231894 23231933 -21675637 - L2 LINE L2 -642 2671 2636 455 92 15 0 chr21 23234149 23234214 -21673356 - THE1C LTR MaLR -2 373 308 1430 108 13 43 chr21 23235320 23235551 -21672019 + AluSx SINE Alu 1 224 -88 28 0 0 0 chr21 23235687 23235715 -21671855 + AT_rich Low_complexity Low_complexity 1 28 0 636 280 92 78 chr21 23235854 23236030 -21671540 - L2 LINE L2 0 3313 3141 1658 208 7 50 chr21 23236030 23236433 -21671137 + MLT1B LTR MaLR 5 390 0 636 280 92 78 chr21 23236433 23236828 -21670742 - L2 LINE L2 -172 3141 2731 1978 125 37 0 chr21 23237232 23237528 -21670042 - AluSx SINE Alu -5 307 1 490 234 21 35 chr21 23237932 23238077 -21669493 - LTR45 LTR ERV1 0 525 383 2360 109 0 0 chr21 23238111 23238423 -21669147 + AluSx SINE Alu 1 312 0 443 117 0 48 chr21 23238426 23238529 -21669041 + (GGGAA)n Simple_repeat Simple_repeat 4 101 0 2076 134 3 3 chr21 23238560 23238858 -21668712 + AluSp SINE Alu 3 300 -13 1667 121 99 13 chr21 23238858 23239175 -21668395 + MSTA LTR MaLR 67 428 0 5087 165 19 4 chr21 23239177 23240121 -21667449 + Tigger3b DNA MER2_type 244 1201 -30 2630 48 0 0 chr21 23240175 23240486 -21667084 + AluY SINE Alu 1 311 0 189 171 0 0 chr21 23241630 23241665 -21665905 + (CATA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr21 23241730 23241755 -21665815 + AT_rich Low_complexity Low_complexity 1 25 0 532 156 0 11 chr21 23242070 23242160 -21665410 - MLT1C LTR MaLR -8 459 371 944 158 63 109 chr21 23242324 23242609 -21664961 - MLT1C LTR MaLR -195 272 1 255 355 159 14 chr21 23242862 23243208 -21664362 - L2 LINE L2 -657 2657 2262 1240 195 4 12 chr21 23243364 23243615 -21663955 - L1MB5 LINE L1 -1 6173 5925 424 316 29 0 chr21 23243888 23244027 -21663543 - MIR SINE MIR -10 252 110 449 319 65 19 chr21 23244150 23244400 -21663170 + MLT1I LTR MaLR 58 286 -123 1992 152 44 64 chr21 23245135 23245589 -21661981 + MER65A LTR ERV1 1 445 0 2361 249 58 70 chr21 23245848 23246654 -21660916 - MER21B LTR ERV1 -48 815 19 325 240 0 62 chr21 23246676 23246772 -21660798 - MER21B LTR ERV1 -773 90 1 1377 79 0 6 chr21 23247440 23247618 -21659952 + AluY SINE Alu 84 260 -51 22 80 0 0 chr21 23247675 23247725 -21659845 + AT_rich Low_complexity Low_complexity 1 50 0 2972 138 11 40 chr21 23248048 23248575 -21658995 - MER41E LTR ERV1 0 512 1 533 312 72 36 chr21 23250963 23251617 -21655953 + L1ME LINE L1 1263 1919 -4727 2412 73 0 7 chr21 23251617 23251920 -21655650 + AluY SINE Alu 1 301 -10 533 312 72 36 chr21 23251920 23251983 -21655587 + L1ME LINE L1 1919 1978 -4668 2074 160 12 0 chr21 23252171 23252509 -21655061 + L1M2 LINE L1 1 342 -6507 2259 92 0 0 chr21 23252859 23253165 -21654405 - AluSp SINE Alu 0 308 3 201 74 0 0 chr21 23253512 23253539 -21654031 + (TAA)n Simple_repeat Simple_repeat 1 27 0 429 277 50 38 chr21 23253544 23253703 -21653867 - MIR SINE MIR -18 244 84 25 31 0 0 chr21 23254042 23254074 -21653496 + AT_rich Low_complexity Low_complexity 1 32 0 2234 189 53 14 chr21 23254151 23254644 -21652926 - MER50 LTR ERV1 -212 522 11 1762 148 43 57 chr21 23254750 23254986 -21652584 - L1MA4A LINE L1 -1 6302 6073 2166 88 28 0 chr21 23254986 23255271 -21652299 - AluY SINE Alu -18 293 1 1762 148 43 57 chr21 23255271 23255453 -21652117 - L1MA4A LINE L1 -230 6073 5890 3262 208 38 132 chr21 23255454 23256458 -21651112 - L1M2 LINE L1 -5583 1266 357 673 219 26 13 chr21 23256463 23256614 -21650956 - MLT1C LTR MaLR -2 465 313 11257 174 38 15 chr21 23256614 23257234 -21650336 + ERVL-D LTR ERVL 3343 3947 -1817 2746 22 0 3 chr21 23257234 23257546 -21650024 - AluY SINE Alu 0 311 1 11257 174 38 15 chr21 23257546 23258977 -21648593 + ERVL-D LTR ERVL 3947 5442 -322 249 196 0 0 chr21 23258990 23259041 -21648529 + (CA)n Simple_repeat Simple_repeat 2 52 0 1904 159 17 38 chr21 23259041 23259387 -21648183 + MER47A DNA MER2_type 1 339 -27 1519 139 19 57 chr21 23259391 23259708 -21647862 + ERVL-D LTR ERVL 5453 5757 -7 1822 193 14 19 chr21 23259708 23260076 -21647494 + MLT2D LTR ERVL 1 366 -48 236 109 22 22 chr21 23260117 23260163 -21647407 + MLT2D LTR ERVL 350 395 -2 734 198 85 49 chr21 23260165 23260300 -21647270 + L1ME2 LINE L1 5909 6059 -105 351 0 0 0 chr21 23260300 23260339 -21647231 + (TA)n Simple_repeat Simple_repeat 1 39 0 734 198 85 49 chr21 23260339 23260450 -21647120 + L1ME2 LINE L1 6059 6164 0 317 207 120 33 chr21 23260592 23260742 -21646828 + L1ME4a LINE L1 5954 6116 -5 1182 272 39 3 chr21 23260808 23261113 -21646457 - MLT1E2 LTR MaLR 0 626 311 24 53 0 0 chr21 23261203 23261241 -21646329 + AT_rich Low_complexity Low_complexity 1 38 0 592 115 19 0 chr21 23261249 23261353 -21646217 + CT-rich Low_complexity Low_complexity 3 108 0 606 306 41 15 chr21 23263266 23263537 -21644033 - MER110 LTR ERV1 -49 442 165 989 215 139 4 chr21 23264903 23265233 -21642337 + MSTD LTR MaLR 2 396 0 7624 25 0 0 chr21 23265410 23266742 -21640828 - L1PA3 LINE L1 -3 6152 4828 263 366 75 39 chr21 23267578 23267884 -21639686 - L3 LINE CR1 -2 1575 1259 275 203 16 0 chr21 23268582 23268646 -21638924 + MLT2C2 LTR ERVL 1 65 -399 447 311 110 0 chr21 23268809 23268973 -21638597 - LTR33 LTR ERVL -307 214 33 21 0 0 0 chr21 23269398 23269419 -21638151 + AT_rich Low_complexity Low_complexity 1 21 0 552 319 94 38 chr21 23269685 23269973 -21637597 - MLT1J2 LTR MaLR -129 321 18 350 315 74 20 chr21 23270683 23270832 -21636738 - MIR SINE MIR -56 206 50 338 159 14 0 chr21 23273520 23273589 -21633981 + CT-rich Low_complexity Low_complexity 1 70 0 1887 156 30 50 chr21 23274759 23275157 -21632413 - MLT1B LTR MaLR 0 390 1 30 27 0 0 chr21 23277772 23277809 -21629761 + AT_rich Low_complexity Low_complexity 1 37 0 350 329 232 30 chr21 23278908 23279279 -21628291 + L2 LINE L2 2826 3271 -1 31 0 0 0 chr21 23279324 23279355 -21628215 + AT_rich Low_complexity Low_complexity 1 31 0 357 257 10 30 chr21 23279915 23280016 -21627554 + L1MB1 LINE L1 2736 2834 -4015 981 280 34 3 chr21 23280023 23280380 -21627190 + L1MB1 LINE L1 2962 3329 -3519 1252 186 9 0 chr21 23280381 23280596 -21626974 + MER1B DNA MER1_type 1 217 -80 390 157 79 22 chr21 23280591 23280680 -21626890 + MER1B DNA MER1_type 235 328 -1 * 11018 200 28 15 chr21 23280691 23283078 -21624492 + L1MB1 LINE L1 3333 5781 -1089 2273 76 20 3 chr21 23283078 23283382 -21624188 + AluY SINE Alu 1 309 -2 11018 200 28 15 chr21 23283382 23284472 -21623098 + L1MB1 LINE L1 5781 6855 -15 287 330 43 29 chr21 23284496 23284705 -21622865 - MLT1K LTR MaLR -236 352 141 2241 61 11 0 chr21 23284810 23285124 -21622446 - AluY SINE Alu 0 317 1 22 56 0 0 chr21 23286421 23286457 -21621113 + AT_rich Low_complexity Low_complexity 1 36 0 314 279 106 34 chr21 23287437 23287616 -21619954 - MIR SINE MIR -24 238 47 1963 121 0 54 chr21 23287665 23287979 -21619591 - AluSx SINE Alu -15 297 1 194 0 39 0 chr21 23288256 23288282 -21619288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1084 166 14 93 chr21 23289075 23289364 -21618206 + THE1C LTR MaLR 72 337 -38 392 333 61 37 chr21 23289913 23290159 -21617411 + MIR SINE MIR 1 252 -10 2228 97 0 13 chr21 23290194 23290493 -21617077 + AluSq SINE Alu 3 297 -16 22 35 0 0 chr21 23290987 23291016 -21616554 + AT_rich Low_complexity Low_complexity 1 29 0 1168 254 88 38 chr21 23291233 23291710 -21615860 - LTR40a LTR ERVL -18 501 1 2137 122 0 0 chr21 23291996 23292290 -21615280 - AluSc SINE Alu -13 296 3 332 22 22 0 chr21 23292292 23292337 -21615233 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1764 133 25 7 chr21 23292337 23292615 -21614955 - AluSq SINE Alu -30 283 1 270 0 0 0 chr21 23292623 23292653 -21614917 + (T)n Simple_repeat Simple_repeat 1 30 0 811 117 0 8 chr21 23294329 23294449 -21613121 - AluSg/x SINE Alu -18 292 174 324 0 0 0 chr21 23295118 23295154 -21612416 + (CA)n Simple_repeat Simple_repeat 1 36 0 1797 315 116 12 chr21 23296196 23297119 -21610451 + L2 LINE L2 763 1781 -1533 242 319 64 21 chr21 23297116 23297257 -21610313 + MIR SINE MIR 60 206 -56 * 24 32 0 0 chr21 23297337 23297368 -21610202 + AT_rich Low_complexity Low_complexity 1 31 0 484 310 32 5 chr21 23297471 23297658 -21609912 - LTR33A LTR ERVL -7 516 325 312 310 58 32 chr21 23297803 23297958 -21609612 - LTR50 LTR ERVL -634 161 3 243 146 0 0 chr21 23298369 23298410 -21609160 + (TG)n Simple_repeat Simple_repeat 1 41 0 502 297 92 35 chr21 23298445 23298674 -21608896 + MIR SINE MIR 21 262 0 590 249 17 44 chr21 23299754 23299935 -21607635 - L1ME2 LINE L1 -34 6130 5955 551 276 17 0 chr21 23299957 23300131 -21607439 - L1ME2 LINE L1 -271 5891 5715 303 309 42 30 chr21 23300260 23300522 -21607048 - L1ME2 LINE L1 -975 5171 4907 1634 170 28 74 chr21 23300707 23301101 -21606469 + MLT1B LTR MaLR 1 376 -14 1371 167 174 9 chr21 23301110 23301427 -21606143 + MLT1B LTR MaLR 22 390 0 21 0 0 0 chr21 23301799 23301820 -21605750 + AT_rich Low_complexity Low_complexity 1 21 0 228 167 42 0 chr21 23302234 23302306 -21605264 + (TA)n Simple_repeat Simple_repeat 2 76 0 2237 109 6 3 chr21 23302712 23303023 -21604547 - AluSx SINE Alu 0 312 1 1000 208 60 5 chr21 23303512 23303791 -21603779 - MLT1A1 LTR MaLR 0 365 22 6582 196 19 6 chr21 23303791 23304992 -21602578 - MSTB-int LTR MaLR -434 1217 1 1893 190 47 38 chr21 23304992 23305414 -21602156 - MSTB LTR MaLR 0 426 1 5043 142 32 11 chr21 23306527 23307907 -21599663 + L1PA16 LINE L1 4762 6165 -1 1630 211 25 11 chr21 23308177 23308537 -21599033 - MLT1A1 LTR MaLR 0 365 1 1393 305 81 8 chr21 23310208 23310804 -21596766 - HERV16 LTR ERVL -4127 869 231 1020 321 90 8 chr21 23310993 23311395 -21596175 - LTR16A LTR ERVL 0 450 16 862 265 58 75 chr21 23311649 23312192 -21595378 - MER77 LTR ERV1 -23 582 214 2474 140 26 12 chr21 23312609 23313031 -21594539 - MSTA LTR MaLR 0 428 1 613 291 58 23 chr21 23313177 23313438 -21594132 + MER110 LTR ERV1 171 440 -51 310 278 31 10 chr21 23313581 23313678 -21593892 - LTR68 LTR ERV1 -334 406 308 424 286 65 18 chr21 23313748 23313916 -21593654 - LTR68 LTR ERV1 -561 179 4 1778 199 34 11 chr21 23313943 23314284 -21593286 - MLT1A1 LTR MaLR 0 365 14 646 128 28 0 chr21 23314284 23314393 -21593177 + L1MA3 LINE L1 6194 6305 0 1778 199 34 11 chr21 23314393 23314408 -21593162 - MLT1A1 LTR MaLR -351 14 1 225 193 239 23 chr21 23314817 23314905 -21592665 - MLT2E LTR ERVL -490 138 32 543 257 74 115 chr21 23315089 23315518 -21592052 - HAL1 LINE L1 -335 2172 1772 2144 96 0 7 chr21 23315518 23315809 -21591761 - AluSg1 SINE Alu -20 289 1 543 257 74 115 chr21 23315809 23315962 -21591608 - HAL1 LINE L1 -735 1772 1614 713 318 57 67 chr21 23316031 23316834 -21590736 - HAL1 LINE L1 -1407 1100 306 2157 116 3 0 chr21 23317062 23317372 -21590198 + AluY SINE Alu 1 311 0 894 242 69 25 chr21 23317768 23318045 -21589525 + MLT1B LTR MaLR 102 390 0 239 327 18 18 chr21 23319561 23319674 -21587896 + MIR SINE MIR 125 237 -25 340 281 32 22 chr21 23321304 23321408 -21586162 + MER5A DNA MER1_type 26 119 -59 358 235 0 0 chr21 23322105 23322186 -21585384 - MLT1D LTR MaLR 0 505 425 1647 240 156 54 chr21 23322187 23322232 -21585338 + L1MEc LINE L1 1026 1065 -5542 2480 121 6 3 chr21 23322232 23322595 -21584975 + THE1B LTR MaLR 1 364 0 1647 240 156 54 chr21 23322595 23323553 -21584017 + L1MEc LINE L1 1065 2239 -4368 494 212 8 59 chr21 23323560 23323678 -21583892 - MER52A LTR ERV1 -1588 167 56 433 261 42 6 chr21 23324167 23324332 -21583238 + L1MEc LINE L1 3747 3917 -2509 456 205 26 17 chr21 23324422 23324539 -21583031 + L1MC3 LINE L1 7652 7769 -16 279 356 31 21 chr21 23324915 23325106 -21582464 + L1ME LINE L1 116 308 -5762 1051 300 96 44 chr21 23325120 23326579 -21580991 + L1ME LINE L1 397 1962 -4299 2468 112 43 0 chr21 23326582 23326931 -21580639 + THE1B LTR MaLR 1 364 0 2325 71 7 32 chr21 23327941 23328249 -21579321 - AluY SINE Alu -11 300 1 255 215 0 0 chr21 23328738 23328803 -21578767 + GA-rich Low_complexity Low_complexity 4 68 0 1338 218 30 27 chr21 23328865 23329196 -21578374 + LTR52 LTR ERVL 87 418 -3 2327 103 0 0 chr21 23329628 23329930 -21577640 - AluSx SINE Alu -10 302 1 26 0 0 0 chr21 23330278 23330304 -21577266 + AT_rich Low_complexity Low_complexity 1 26 0 454 312 7 22 chr21 23330451 23330589 -21576981 - L2 LINE L2 -1 3312 3177 200 246 0 18 chr21 23332171 23332228 -21575342 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr21 23332265 23332294 -21575276 + AT_rich Low_complexity Low_complexity 1 29 0 837 119 0 182 chr21 23332295 23332531 -21575039 + 7SK RNA RNA 1 193 0 2310 102 7 0 chr21 23333233 23333538 -21574032 + AluSc SINE Alu 1 307 -2 1898 108 0 8 chr21 23334026 23334285 -21573285 - AluY SINE Alu -18 293 37 1648 198 69 3 chr21 23334545 23334879 -21572691 + MLT1A1 LTR MaLR 10 365 0 498 161 0 0 chr21 23335728 23335821 -21571749 + CT-rich Low_complexity Low_complexity 4 96 0 294 180 0 0 chr21 23335994 23336055 -21571515 + (CA)n Simple_repeat Simple_repeat 2 62 0 364 283 51 80 chr21 23336113 23336389 -21571181 + L1M4 LINE L1 4477 4744 -1402 1292 228 54 68 chr21 23336707 23337075 -21570495 + MLT1A1 LTR MaLR 1 354 -11 26 50 0 0 chr21 23337722 23337762 -21569808 + AT_rich Low_complexity Low_complexity 1 40 0 229 219 24 0 chr21 23337903 23337944 -21569626 + 5S rRNA rRNA 1 42 -79 180 0 0 0 chr21 23338674 23338694 -21568876 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4087 129 4 68 chr21 23338870 23339608 -21567962 - LTR8 LTR ERV1 0 691 1 855 291 19 30 chr21 23339724 23339995 -21567575 - MER21B LTR ERV1 -125 738 471 269 250 0 0 chr21 23341489 23341553 -21566017 + MIR SINE MIR 187 250 -12 194 352 24 24 chr21 23342930 23343055 -21564515 + L3 LINE CR1 1190 1314 -263 324 160 0 0 chr21 23343696 23343746 -21563824 - MSTC LTR MaLR -6 422 373 2625 77 8 17 chr21 23343789 23344151 -21563419 - L1PB1 LINE L1 -2 6149 5791 835 266 15 0 chr21 23345020 23345223 -21562347 + MER58A DNA MER1_type 7 212 -12 3067 164 16 11 chr21 23346135 23346702 -21560868 - Tigger3b DNA MER2_type 0 1232 663 1936 187 56 29 chr21 23346702 23347242 -21560328 + MLT2A2 LTR ERVL 1 554 0 * 3441 142 29 62 chr21 23347242 23347933 -21559637 - Tigger3b DNA MER2_type -563 668 1 4821 107 0 58 chr21 23349559 23350334 -21557236 + LTR17 LTR ERV1 2 731 -49 389 358 76 37 chr21 23350699 23351054 -21556516 - HAL1 LINE L1 -2115 392 24 294 340 103 12 chr21 23351067 23351320 -21556250 + L2 LINE L2 1817 2092 -1222 26 50 0 0 chr21 23351749 23351789 -21555781 + AT_rich Low_complexity Low_complexity 1 40 0 2326 103 0 0 chr21 23351927 23352229 -21555341 - AluSq SINE Alu -11 302 1 503 317 103 60 chr21 23352487 23352935 -21554635 - L2 LINE L2 -15 3298 2832 2682 137 7 18 chr21 23353011 23353450 -21554120 - MER57B LTR ERV1 0 434 1 509 218 0 0 chr21 23353503 23353613 -21553957 - FLAM_A SINE Alu -9 133 24 2270 269 51 39 chr21 23354189 23354716 -21552854 + L1ME1 LINE L1 5267 5811 -355 1232 184 58 4 chr21 23354716 23354993 -21552577 + L1MB7 LINE L1 5891 6182 -2 2270 269 51 39 chr21 23354993 23355342 -21552228 + L1ME1 LINE L1 5811 6154 -12 615 176 84 8 chr21 23357330 23357461 -21550109 + FRAM SINE Alu 21 161 -15 276 30 0 0 chr21 23359235 23359268 -21548302 + (TG)n Simple_repeat Simple_repeat 2 34 0 185 246 15 0 chr21 23360987 23361052 -21546518 + (TA)n Simple_repeat Simple_repeat 2 67 0 549 274 121 37 chr21 23361414 23362118 -21545452 + L1M4 LINE L1 3970 4732 -1414 191 322 0 23 chr21 23362288 23362375 -21545195 + L2 LINE L2 2995 3079 -234 242 217 0 0 chr21 23363118 23363164 -21544406 + L2 LINE L2 3227 3272 0 5373 89 12 4 chr21 23363194 23363954 -21543616 + L1PB1 LINE L1 5383 6148 -3 1893 85 4 0 chr21 23364471 23364718 -21542852 - AluSp SINE Alu 0 313 66 271 157 20 0 chr21 23365329 23365380 -21542190 + L2 LINE L2 3261 3312 -1 22 0 0 0 chr21 23365826 23365848 -21541722 + AT_rich Low_complexity Low_complexity 1 22 0 186 211 13 26 chr21 23366783 23366859 -21540711 + GA-rich Low_complexity Low_complexity 1 75 0 2080 133 122 8 chr21 23367980 23368364 -21539206 - MSTA LTR MaLR 0 428 1 29 60 0 0 chr21 23368998 23369048 -21538522 + AT_rich Low_complexity Low_complexity 1 50 0 1285 49 12 0 chr21 23370107 23370270 -21537300 - AluY SINE Alu 0 311 147 743 273 19 52 chr21 23371015 23371282 -21536288 - MIR SINE MIR -3 259 2 2148 111 0 40 chr21 23371794 23372119 -21535451 + AluSx SINE Alu 1 312 0 349 269 157 20 chr21 23372500 23372791 -21534779 + L1ME LINE L1 5549 5881 -289 213 163 23 0 chr21 23372841 23372884 -21534686 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 54 0 0 chr21 23373002 23373039 -21534531 + AT_rich Low_complexity Low_complexity 1 37 0 2157 103 0 39 chr21 23375016 23375327 -21532243 - AluSx SINE Alu -13 299 1 6236 136 31 15 chr21 23375337 23376279 -21531291 - L1MA2 LINE L1 0 7723 6737 1514 85 35 0 chr21 23376279 23376480 -21531090 + AluSp SINE Alu 93 300 -13 6236 136 31 15 chr21 23376480 23377029 -21530541 - L1MA2 LINE L1 -986 6737 6199 737 142 0 0 chr21 23377012 23377132 -21530438 - L1MA2 LINE L1 -4159 3406 3287 * 7570 119 4 22 chr21 23377142 23378271 -21529299 - THE1A-int LTR MaLR -471 1109 1 2403 99 29 0 chr21 23378273 23378616 -21528954 - THE1A LTR MaLR -2 353 1 12662 189 42 6 chr21 23378616 23380948 -21526622 - L1MA2 LINE L1 -5134 2431 18 21 0 0 0 chr21 23381164 23381185 -21526385 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 23381858 23381902 -21525668 + AT_rich Low_complexity Low_complexity 1 44 0 298 289 184 10 chr21 23383049 23383250 -21524320 + L1ME LINE L1 5502 5737 -384 212 125 42 0 chr21 23383357 23383405 -21524165 + (TA)n Simple_repeat Simple_repeat 1 50 0 263 301 0 81 chr21 23384221 23384344 -21523226 - MIR SINE MIR -120 142 30 2279 127 42 14 chr21 23384560 23384914 -21522656 + THE1B LTR MaLR 1 364 0 11063 99 3 11 chr21 23384915 23385284 -21522286 + THE1B-int LTR MaLR 2 373 -1207 2076 134 3 0 chr21 23385284 23385575 -21521995 - AluSg1 SINE Alu -13 296 5 11063 99 3 11 chr21 23385575 23386710 -21520860 + THE1B-int LTR MaLR 373 1493 -87 315 79 0 0 chr21 23389028 23389066 -21518504 - tRNA-Lys-AAG tRNA tRNA -38 38 1 205 177 16 32 chr21 23389143 23389205 -21518365 + (TA)n Simple_repeat Simple_repeat 2 62 0 212 232 0 14 chr21 23389602 23389671 -21517899 + GA-rich Low_complexity Low_complexity 3 70 0 859 359 47 11 chr21 23390764 23391212 -21516358 - L3 LINE CR1 -150 1427 964 304 268 41 10 chr21 23392353 23392450 -21515120 - MIR3 SINE MIR 0 208 109 344 352 62 42 chr21 23392624 23392775 -21514795 + L2 LINE L2 2936 3083 -230 2534 112 16 13 chr21 23392775 23393149 -21514421 + THE1C LTR MaLR 1 375 0 344 352 62 42 chr21 23393149 23393352 -21514218 + L2 LINE L2 3083 3297 -16 1837 113 28 7 chr21 23395023 23395314 -21512256 - L1PA13 LINE L1 -5 6158 5862 1655 64 13 30 chr21 23395314 23395547 -21512023 + L1PA13 LINE L1 5652 5880 -288 3143 132 7 63 chr21 23396003 23396149 -21511421 + L1PA15 LINE L1 5629 5782 -383 1878 144 4 0 chr21 23396149 23396419 -21511151 + AluSq SINE Alu 4 274 -39 3143 132 7 63 chr21 23396419 23396827 -21510743 + L1PA15 LINE L1 5782 6152 -13 21 0 0 0 chr21 23396899 23396920 -21510650 + AT_rich Low_complexity Low_complexity 1 21 0 2162 105 57 23 chr21 23396926 23397278 -21510292 - THE1B LTR MaLR 0 364 1 26 74 0 0 chr21 23397720 23397774 -21509796 + AT_rich Low_complexity Low_complexity 1 54 0 2105 160 28 25 chr21 23397898 23398261 -21509309 + THE1B LTR MaLR 1 364 0 10239 102 82 0 chr21 23398261 23399721 -21507849 + THE1B-int LTR MaLR 1 1580 0 2195 120 57 20 chr21 23399722 23400072 -21507498 + THE1B LTR MaLR 2 364 0 1356 222 25 52 chr21 23400132 23400533 -21507037 - MLT2C1 LTR ERVL -7 390 1 25 0 0 0 chr21 23400600 23400625 -21506945 + AT_rich Low_complexity Low_complexity 1 25 0 1280 272 48 6 chr21 23400735 23401048 -21506522 - MLT1H LTR MaLR -221 328 3 2411 77 7 0 chr21 23401353 23401652 -21505918 + AluY SINE Alu 1 301 -10 545 290 6 6 chr21 23401776 23401945 -21505625 - MER115 DNA AcHobo -3 690 522 182 294 169 65 chr21 23402571 23402755 -21504815 - L2 LINE L2 -2789 525 323 189 271 0 17 chr21 23402818 23402877 -21504693 + L2 LINE L2 3236 3293 -20 230 182 23 0 chr21 23403333 23403377 -21504193 - MER112 DNA MER1_type -6 254 210 334 381 126 20 chr21 23403509 23404160 -21503410 - L2 LINE L2 0 3272 2557 236 338 65 40 chr21 23404205 23404406 -21503164 - L2 LINE L2 -898 2416 2211 972 287 99 50 chr21 23404479 23405155 -21502415 - MER20B DNA MER1_type -48 735 27 2607 141 9 9 chr21 23405155 23405588 -21501982 + MER57B LTR ERV1 2 434 0 2090 97 4 0 chr21 23405710 23405979 -21501591 - AluSq SINE Alu -10 303 34 1983 162 3 0 chr21 23406946 23407255 -21500315 - AluSx SINE Alu 0 312 3 243 318 103 56 chr21 23407908 23408103 -21499467 + MIR SINE MIR 6 209 -53 236 199 7 164 chr21 23409561 23409669 -21497901 + L1ME3 LINE L1 5955 6036 -126 1521 194 48 3 chr21 23409669 23409843 -21497727 - AluJb SINE Alu -5 307 113 180 0 0 0 chr21 23409843 23409863 -21497707 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1521 194 48 3 chr21 23409863 23409982 -21497588 - AluJb SINE Alu -199 113 1 236 199 7 164 chr21 23409982 23410019 -21497551 + L1ME3 LINE L1 6036 6077 -85 304 282 12 0 chr21 23410144 23410229 -21497341 - MER94 DNA DNA -41 93 8 206 342 19 44 chr21 23410457 23410603 -21496967 - MIR SINE MIR -63 145 7 2017 120 0 0 chr21 23412731 23413007 -21494563 + AluSx SINE Alu 1 276 -36 486 0 0 0 chr21 23413009 23413063 -21494507 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 306 0 0 0 chr21 23414173 23414207 -21493363 + (TG)n Simple_repeat Simple_repeat 2 35 0 2060 116 7 3 chr21 23414970 23415262 -21492308 + AluSx SINE Alu 1 293 -19 2105 114 23 0 chr21 23417011 23417317 -21490253 + AluSq SINE Alu 1 313 0 189 0 0 0 chr21 23417609 23417630 -21489940 + (T)n Simple_repeat Simple_repeat 1 21 0 1636 157 3 60 chr21 23418332 23418632 -21488938 + AluJo SINE Alu 6 288 -24 995 237 82 84 chr21 23419102 23419566 -21488004 + MLT1C LTR MaLR 5 467 0 221 164 33 16 chr21 23420425 23420486 -21487084 + (TTATA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr21 23420562 23420590 -21486980 + AT_rich Low_complexity Low_complexity 1 28 0 761 283 27 14 chr21 23420799 23421022 -21486548 + MIR SINE MIR 10 235 -27 1926 114 0 0 chr21 23421861 23422124 -21485446 - AluSg SINE Alu -4 306 44 998 217 62 20 chr21 23422839 23422959 -21484611 - AluJo SINE Alu -58 254 140 186 43 0 0 chr21 23422959 23422982 -21484588 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 998 217 62 20 chr21 23422982 23423105 -21484465 - AluJo SINE Alu -172 140 1 1760 220 35 66 chr21 23423237 23423755 -21483815 + MLT1D LTR MaLR 3 504 -1 320 240 194 23 chr21 23424385 23424514 -21483056 - L2 LINE L2 -5 3308 3158 385 325 0 0 chr21 23425006 23425123 -21482447 + MIR3 SINE MIR 87 203 -5 333 47 0 0 chr21 23425567 23425610 -21481960 + (CA)n Simple_repeat Simple_repeat 2 44 0 2195 110 0 7 chr21 23425647 23425947 -21481623 + AluSx SINE Alu 1 298 -14 2284 95 0 0 chr21 23426066 23426361 -21481209 - AluSx SINE Alu -17 295 1 246 62 0 0 chr21 23427065 23427097 -21480473 + (T)n Simple_repeat Simple_repeat 1 32 0 291 191 0 0 chr21 23427233 23427296 -21480274 + CT-rich Low_complexity Low_complexity 2 64 0 2061 172 28 116 chr21 23428861 23429424 -21478146 - MLT2B2 LTR ERVL -1 514 1 2029 144 7 0 chr21 23429487 23429786 -21477784 - AluSx SINE Alu -11 301 1 1862 174 24 0 chr21 23431252 23431592 -21475978 - MER7A DNA MER2_type 0 346 1 521 278 186 21 chr21 23432089 23432380 -21475190 + MLT1L LTR MaLR 277 615 0 1219 142 0 0 chr21 23432643 23432819 -21474751 + AluSc SINE Alu 128 303 -6 668 122 0 0 chr21 23433370 23433460 -21474110 + 5S rRNA rRNA 1 90 -31 1482 174 83 67 chr21 23433595 23433981 -21473589 - MSTD LTR MaLR -1 395 4 236 339 61 48 chr21 23434626 23434791 -21472779 - MIR SINE MIR -47 215 49 686 302 114 25 chr21 23434842 23435157 -21472413 - L2 LINE L2 -2 3311 2969 1374 244 40 3 chr21 23435202 23435530 -21472040 + MER58B DNA MER1_type 1 340 -1 1420 326 85 30 chr21 23435534 23436407 -21471163 - L2 LINE L2 -421 2893 1973 22 0 0 0 chr21 23436521 23436543 -21471027 + AT_rich Low_complexity Low_complexity 1 22 0 257 328 52 30 chr21 23437689 23437823 -21469747 - L2 LINE L2 -8 3305 3169 202 267 67 67 chr21 23438039 23438129 -21469441 - MIR SINE MIR -123 139 50 2430 115 80 8 chr21 23438825 23439224 -21468346 + MSTA LTR MaLR 1 428 0 180 316 79 26 chr21 23439323 23439399 -21468171 + L2 LINE L2 3188 3267 -5 374 319 68 12 chr21 23439616 23439779 -21467791 - MIR SINE MIR -67 195 24 357 125 0 0 chr21 23440797 23440853 -21466717 + (CA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr21 23440896 23440918 -21466652 + AT_rich Low_complexity Low_complexity 1 22 0 2117 109 0 0 chr21 23441496 23441780 -21465790 - AluSg SINE Alu 0 310 27 489 305 30 39 chr21 23443761 23443994 -21463576 + MIR SINE MIR 32 262 0 322 274 28 9 chr21 23444435 23444541 -21463029 + MLT1G1 LTR MaLR 488 595 0 668 283 126 4 chr21 23444885 23445115 -21462455 + MIR SINE MIR 3 260 -2 2190 134 0 0 chr21 23445380 23445685 -21461885 - AluSx SINE Alu -7 305 1 256 265 13 0 chr21 23446631 23446715 -21460855 - MLT1G LTR MaLR 0 590 471 783 67 0 0 chr21 23447418 23447523 -21460047 + L1PA5 LINE L1 6049 6153 -1 267 383 47 9 chr21 23448188 23448295 -21459275 + MER91A DNA MER1_type 33 143 -53 21 36 0 0 chr21 23449545 23449573 -21457997 + AT_rich Low_complexity Low_complexity 1 28 0 324 48 0 0 chr21 23450610 23450652 -21456918 + (CA)n Simple_repeat Simple_repeat 1 42 0 4523 250 85 31 chr21 23451465 23453312 -21454258 - L1 LINE L1 -3865 2169 245 298 358 0 65 chr21 23453679 23453880 -21453690 - L1 LINE L1 -5546 409 222 360 271 129 6 chr21 23453911 23454081 -21453489 - L1M1 LINE L1 -4927 2638 2448 467 305 35 20 chr21 23454115 23454315 -21453255 - L1 LINE L1 -5738 217 15 2193 132 0 3 chr21 23454672 23454982 -21452588 - AluSx SINE Alu -3 309 1 239 202 22 45 chr21 23455372 23455461 -21452109 + L1MC4 LINE L1 6615 6701 -1341 361 235 45 15 chr21 23455606 23455738 -21451832 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 4904 218 75 29 chr21 23456020 23458095 -21449475 - L1MB8 LINE L1 -1 6177 3978 288 0 0 0 chr21 23459308 23459340 -21448230 + (TA)n Simple_repeat Simple_repeat 2 33 0 * 333 0 0 0 chr21 23459339 23459376 -21448194 + (TG)n Simple_repeat Simple_repeat 2 38 0 800 186 21 0 chr21 23459748 23459888 -21447682 + AluJb SINE Alu 104 246 -66 4942 165 37 37 chr21 23460683 23462090 -21445480 + L1MA8 LINE L1 4891 6285 -6 25 0 0 0 chr21 23462578 23462603 -21444967 + AT_rich Low_complexity Low_complexity 1 25 0 216 375 45 0 chr21 23462611 23462699 -21444871 + L2 LINE L2 3202 3293 -20 21 0 0 0 chr21 23463328 23463349 -21444221 + AT_rich Low_complexity Low_complexity 1 21 0 459 334 223 14 chr21 23464224 23464646 -21442924 - L2 LINE L2 0 3313 2804 1047 250 38 56 chr21 23464650 23465043 -21442527 - L1MB8 LINE L1 -2133 4013 3627 3875 95 11 4 chr21 23465043 23465599 -21441971 + L1PA12 LINE L1 5609 6168 0 1047 250 38 56 chr21 23465599 23465653 -21441917 - L1MB8 LINE L1 -2519 3627 3574 315 161 0 18 chr21 23465667 23465723 -21441847 + MLT1E1 LTR MaLR 600 654 0 766 267 41 28 chr21 23465724 23465986 -21441584 - L1MB8 LINE L1 -3364 2782 2514 1047 239 69 67 chr21 23465986 23466375 -21441195 - MLT1B LTR MaLR 0 390 1 766 267 41 28 chr21 23466375 23466430 -21441140 - L1MB8 LINE L1 -3632 2514 2461 383 320 58 77 chr21 23466461 23466839 -21440731 + L1MB2 LINE L1 414 784 -5519 9468 225 73 28 chr21 23467012 23472448 -21435122 + L1MB2 LINE L1 777 6372 -35 1593 267 142 33 chr21 23472464 23473483 -21434087 - L1MEc LINE L1 -3873 2523 1394 2215 105 3 0 chr21 23473908 23474212 -21433358 + AluSx SINE Alu 1 305 -7 260 250 87 22 chr21 23474384 23474476 -21433094 - MLT1I LTR MaLR -11 398 301 371 372 7 7 chr21 23474516 23474664 -21432906 - MLT1I LTR MaLR -190 219 72 23 0 0 0 chr21 23475910 23475933 -21431637 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr21 23475972 23476036 -21431534 + AT_rich Low_complexity Low_complexity 1 64 0 350 255 118 66 chr21 23476411 23476623 -21430947 + L2 LINE L2 2921 3143 -170 465 288 7 14 chr21 23476623 23476769 -21430801 - LTR16B LTR ERVL 0 464 320 1927 112 42 3 chr21 23476781 23477068 -21430502 + THE1C LTR MaLR 1 298 -77 215 284 182 23 chr21 23477182 23477270 -21430300 + L2 LINE L2 3153 3254 -18 1330 194 0 62 chr21 23478257 23478546 -21429024 + AluJo SINE Alu 3 273 -39 390 42 0 0 chr21 23478553 23478601 -21428969 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 2879 124 5 0 chr21 23478602 23479029 -21428541 - MER57B LTR ERV1 -3 431 3 318 26 0 0 chr21 23479029 23479068 -21428502 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr21 23479192 23479220 -21428350 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr21 23479599 23479631 -21427939 + AT_rich Low_complexity Low_complexity 1 32 0 206 143 20 0 chr21 23479718 23479767 -21427803 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 54 0 0 chr21 23480601 23480638 -21426932 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr21 23480817 23480847 -21426723 + AT_rich Low_complexity Low_complexity 1 30 0 468 246 96 37 chr21 23481133 23481320 -21426250 - MIR SINE MIR 0 262 65 1552 160 168 24 chr21 23481431 23481805 -21425765 + MSTA LTR MaLR 1 428 0 473 261 83 70 chr21 23483412 23483711 -21423859 + MLT1F1 LTR MaLR 1 313 -254 446 258 45 8 chr21 23483705 23483837 -21423733 + MLT1F1 LTR MaLR 429 565 -2 * 1890 189 11 19 chr21 23484328 23484698 -21422872 + MLT1A2 LTR MaLR 1 367 -7 279 344 74 0 chr21 23484787 23484909 -21422661 + L2 LINE L2 3142 3272 0 463 270 74 61 chr21 23484924 23485003 -21422567 + MER106A DNA MER1_type 4 80 -156 2010 108 3 14 chr21 23485003 23485326 -21422244 + AluY SINE Alu 1 320 0 463 270 74 61 chr21 23485326 23485475 -21422095 + MER106A DNA MER1_type 80 236 0 23 0 0 0 chr21 23486659 23486682 -21420888 + AT_rich Low_complexity Low_complexity 1 23 0 1837 143 36 7 chr21 23487354 23487655 -21419915 + AluSx SINE Alu 1 310 -2 1088 127 49 127 chr21 23487722 23487967 -21419603 - MLT1A1 LTR MaLR -139 226 1 2352 77 0 3 chr21 23488243 23488543 -21419027 + AluY SINE Alu 1 299 -12 736 232 141 14 chr21 23490291 23490511 -21417059 - MIR SINE MIR 0 262 15 610 89 18 0 chr21 23490607 23490719 -21416851 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 238 302 23 12 chr21 23490725 23490748 -21416822 + (TGGA)n Simple_repeat Simple_repeat 2 23 -65 198 0 0 0 chr21 23490748 23490770 -21416800 + (ATG)n Simple_repeat Simple_repeat 3 24 0 238 302 23 12 chr21 23490770 23490832 -21416738 + (TGGA)n Simple_repeat Simple_repeat 23 88 0 209 313 60 0 chr21 23490956 23491039 -21416531 - L2 LINE L2 -48 3224 3137 725 317 74 0 chr21 23491540 23491783 -21415787 - MIR SINE MIR 0 262 2 21 0 0 0 chr21 23492347 23492368 -21415202 + AT_rich Low_complexity Low_complexity 1 21 0 803 268 87 43 chr21 23492454 23492610 -21414960 + L1ME2 LINE L1 5745 5893 -271 255 61 0 0 chr21 23492610 23492643 -21414927 + (CA)n Simple_repeat Simple_repeat 2 34 0 803 268 87 43 chr21 23492643 23492856 -21414714 + L1ME2 LINE L1 5893 6130 -34 21 0 0 0 chr21 23492879 23492900 -21414670 + AT_rich Low_complexity Low_complexity 1 21 0 858 184 35 75 chr21 23492982 23493210 -21414360 - MER20 DNA MER1_type 0 219 1 22 56 0 0 chr21 23493394 23493430 -21414140 + AT_rich Low_complexity Low_complexity 1 36 0 1510 178 37 43 chr21 23493439 23493787 -21413783 + MER4A LTR ERV1 1 346 -318 251 62 25 188 chr21 23493771 23493851 -21413719 + MER4A LTR ERV1 288 354 -310 * 419 191 191 8 chr21 23493915 23494041 -21413529 + MER4C LTR ERV1 296 444 -21 2080 107 21 0 chr21 23494114 23494403 -21413167 - AluSq SINE Alu -18 295 1 2913 164 69 2 chr21 23495292 23495811 -21411759 + MER41C LTR ERV1 1 554 0 2202 124 19 35 chr21 23495814 23496184 -21411386 + THE1B LTR MaLR 1 364 0 349 231 106 10 chr21 23498084 23498188 -21409382 + L1MC5 LINE L1 7753 7866 -95 14197 179 13 7 chr21 23498302 23502363 -21405207 + L1PB1 LINE L1 2778 6865 -2 317 311 51 31 chr21 23502389 23502585 -21404985 - L1ME1 LINE L1 -4 6162 5963 22 0 0 0 chr21 23503593 23503615 -21403955 + AT_rich Low_complexity Low_complexity 1 22 0 2561 212 10 24 chr21 23503676 23504316 -21403254 + L1MA9 LINE L1 5215 5845 -467 1676 181 39 3 chr21 23504321 23504681 -21402889 + L1MA9 LINE L1 5940 6312 0 535 252 73 87 chr21 23504684 23504890 -21402680 + MIR SINE MIR 47 249 -13 22 0 0 0 chr21 23507187 23507209 -21400361 + AT_rich Low_complexity Low_complexity 1 22 0 1251 160 63 21 chr21 23507486 23507724 -21399846 - Tigger2 DNA MER2_type -10 2708 2461 3860 171 35 9 chr21 23507781 23508516 -21399054 - Tigger2 DNA MER2_type -1964 754 1 960 258 101 45 chr21 23508660 23509016 -21398554 + MLT2B1 LTR ERVL 7 382 -138 819 270 32 4 chr21 23509027 23509279 -21398291 + LTR40b LTR ERVL 204 462 0 313 309 32 8 chr21 23509543 23509666 -21397904 - MLT1I LTR MaLR -243 166 41 3788 146 8 18 chr21 23509806 23510464 -21397106 - L1MA9 LINE L1 -2 6310 5660 321 194 0 15 chr21 23510464 23510531 -21397039 + L1MA9 LINE L1 5594 5659 -641 21 36 0 0 chr21 23510627 23510655 -21396915 + AT_rich Low_complexity Low_complexity 1 28 0 464 203 23 55 chr21 23510962 23511090 -21396480 + MER103 DNA DNA 8 131 -35 707 203 5 74 chr21 23511810 23512012 -21395558 + L1MA10 LINE L1 6113 6300 -34 315 0 0 0 chr21 23512043 23512078 -21395492 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 264 154 27 chr21 23512827 23512937 -21394633 + MIR SINE MIR 70 193 -69 5328 132 6 13 chr21 23513411 23514270 -21393300 + L1PA13 LINE L1 5311 6163 0 1512 172 67 70 chr21 23514295 23514669 -21392901 - MER67C LTR ERV1 -243 271 1 2116 106 3 3 chr21 23515126 23515419 -21392151 - AluSc SINE Alu -16 293 1 25 31 0 0 chr21 23515486 23515518 -21392052 + AT_rich Low_complexity Low_complexity 1 32 0 749 165 0 0 chr21 23515724 23515839 -21391731 + MER57B LTR ERV1 1 115 -319 851 110 26 52 chr21 23515843 23515998 -21391572 + MER57B LTR ERV1 284 434 0 228 228 18 44 chr21 23516015 23516129 -21391441 + A-rich Low_complexity Low_complexity 4 114 0 383 275 0 0 chr21 23516321 23516412 -21391158 + L1MC5 LINE L1 6639 6729 -1232 1385 218 158 49 chr21 23516423 23516511 -21391059 + L1MC5 LINE L1 6782 6859 -1102 1643 126 4 0 chr21 23516511 23516741 -21390829 + AluSx SINE Alu 1 231 -81 1385 218 158 49 chr21 23516741 23517221 -21390349 + L1MC5 LINE L1 6859 7412 -549 276 247 44 93 chr21 23517366 23517548 -21390022 + L1ME3 LINE L1 5963 6135 -27 413 316 7 0 chr21 23517591 23517743 -21389827 + MER103 DNA DNA 13 165 -1 247 362 114 12 chr21 23519652 23519906 -21387664 - L2 LINE L2 -167 3105 2826 192 111 0 0 chr21 23521213 23521249 -21386321 + (A)n Simple_repeat Simple_repeat 1 36 0 297 232 96 45 chr21 23521377 23521554 -21386016 + MER113 DNA MER1_type? 20 205 -316 180 0 0 0 chr21 23521630 23521650 -21385920 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 180 308 11 66 chr21 23522318 23522409 -21385161 - L2 LINE L2 -1820 1494 1409 468 310 135 30 chr21 23522471 23522864 -21384706 - L1M4 LINE L1 -1536 4610 4177 435 329 182 9 chr21 23522920 23523145 -21384425 + L2 LINE L2 1164 1427 -1887 1475 288 194 26 chr21 23523207 23523266 -21384304 + L2 LINE L2 1768 1816 -1497 1980 84 47 44 chr21 23523266 23523448 -21384122 - AluSc SINE Alu -12 297 112 216 0 0 0 chr21 23523448 23523472 -21384098 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1980 84 47 44 chr21 23523472 23523585 -21383985 - AluSc SINE Alu -197 112 1 1475 288 194 26 chr21 23523585 23524844 -21382726 + L2 LINE L2 1816 3307 -6 302 326 60 16 chr21 23525015 23525199 -21382371 - L1M4 LINE L1 -2208 3938 3747 2850 90 0 3 chr21 23525255 23525631 -21381939 + THE1C LTR MaLR 1 375 0 183 186 0 0 chr21 23526775 23526818 -21380752 + GA-rich Low_complexity Low_complexity 3 45 0 2588 199 4 6 chr21 23527381 23527854 -21379716 + MER70A LTR ERVL 1 472 0 4875 89 13 6 chr21 23528577 23529260 -21378310 + L1PA10 LINE L1 5481 6168 0 202 114 0 29 chr21 23529758 23529793 -21377777 + (GAGTG)n Simple_repeat Simple_repeat 5 38 0 363 291 16 0 chr21 23530224 23530351 -21377219 + L1ME LINE L1 5526 5654 -467 235 220 34 0 chr21 23530404 23530463 -21377107 + L1ME LINE L1 5751 5811 -359 606 152 0 0 chr21 23531708 23531813 -21375757 - AluSg/x SINE Alu -4 305 201 1684 180 13 7 chr21 23534421 23534726 -21372844 - AluJo SINE Alu -3 309 3 350 171 40 0 chr21 23534861 23534937 -21372633 - MER116 DNA Mariner 0 80 2 1108 282 156 2 chr21 23536509 23536938 -21370632 - MLT1H LTR MaLR -2 547 53 347 162 15 0 chr21 23537271 23537339 -21370231 - MER116 DNA Mariner 0 80 12 1966 147 5 81 chr21 23539166 23539561 -21368009 + MLT1A1 LTR MaLR 1 365 0 317 180 11 0 chr21 23539696 23539785 -21367785 + (TA)n Simple_repeat Simple_repeat 2 91 0 3099 259 96 30 chr21 23539830 23541246 -21366324 + L1MA6 LINE L1 1158 2443 -4663 270 81 0 0 chr21 23541246 23541283 -21366287 + (TA)n Simple_repeat Simple_repeat 2 38 0 3099 259 96 30 chr21 23541283 23541803 -21365767 + L1MA6 LINE L1 2443 2927 -4179 * 7233 154 48 31 chr21 23541802 23544062 -21363508 + L1MA6 LINE L1 4954 7259 -1 260 317 48 81 chr21 23544087 23544273 -21363297 + MIR3 SINE MIR 19 198 -10 207 348 43 17 chr21 23545736 23545851 -21361719 - MIR SINE MIR -79 183 66 343 126 146 58 chr21 23545899 23546002 -21361568 - L1MC5 LINE L1 -159 7802 7691 1297 214 71 36 chr21 23546070 23546520 -21361050 + MER74A LTR ERVL 4 546 -12 617 185 68 25 chr21 23547604 23547766 -21359804 - MER53 DNA DNA -20 169 1 2459 84 0 0 chr21 23548088 23548399 -21359171 - AluSq SINE Alu -2 311 1 23 54 0 0 chr21 23548758 23548795 -21358775 + AT_rich Low_complexity Low_complexity 1 37 0 339 269 32 0 chr21 23549722 23549815 -21357755 - MLT1I LTR MaLR -56 353 258 312 274 0 14 chr21 23549821 23549894 -21357676 - MLT1I LTR MaLR -110 299 228 4944 208 46 31 chr21 23550274 23551654 -21355916 + Charlie1a DNA MER1_type 2 1406 -1355 2168 95 3 26 chr21 23551654 23551958 -21355612 - AluSx SINE Alu -15 297 1 4944 208 46 31 chr21 23551958 23552005 -21355565 + Charlie1a DNA MER1_type 1406 1451 -4 232 300 0 60 chr21 23552832 23552982 -21354588 + T-rich Low_complexity Low_complexity 5 145 0 215 42 21 62 chr21 23553138 23553186 -21354384 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1507 136 120 0 chr21 23553414 23553656 -21353914 + AluSx SINE Alu 3 273 -39 1935 133 48 0 chr21 23553816 23554109 -21353461 - AluSx SINE Alu -5 307 1 2050 135 3 0 chr21 23554175 23554478 -21353092 + AluSx SINE Alu 1 304 -8 2543 281 66 16 chr21 23554617 23555898 -21351672 + L1ME LINE L1 126 1461 -4619 2140 206 15 45 chr21 23555903 23556442 -21351128 + L1MA10 LINE L1 5811 6333 -1 813 283 82 19 chr21 23556440 23557270 -21350300 + L1ME LINE L1 1492 2556 -3524 * 419 325 25 19 chr21 23557519 23557679 -21349891 + MIR SINE MIR 13 173 -89 2081 109 17 3 chr21 23559012 23559306 -21348264 + AluSg SINE Alu 1 298 -12 32 43 0 0 chr21 23559799 23559845 -21347725 + AT_rich Low_complexity Low_complexity 1 46 0 707 262 94 9 chr21 23561092 23561325 -21346245 + MIR SINE MIR 10 262 0 25 0 0 0 chr21 23561824 23561849 -21345721 + AT_rich Low_complexity Low_complexity 1 25 0 376 130 0 0 chr21 23562013 23562067 -21345503 - FRAM/FAM SINE Alu -82 84 31 2232 78 0 27 chr21 23563162 23563455 -21344115 + AluY SINE Alu 1 285 -26 224 276 142 39 chr21 23564870 23564997 -21342573 + MIR SINE MIR 2 141 -121 1504 269 20 11 chr21 23565016 23565455 -21342115 - LTR47B LTR ERVL 0 443 1 657 281 132 41 chr21 23565489 23565905 -21341665 - L2 LINE L2 -21 3292 2839 233 191 176 0 chr21 23565978 23566046 -21341524 + LTR33 LTR ERVL 6 85 -436 2578 103 57 36 chr21 23566090 23566318 -21341252 - MSTA LTR MaLR 0 428 185 1965 152 0 7 chr21 23566318 23566615 -21340955 - AluSx SINE Alu -17 295 1 2578 103 57 36 chr21 23566615 23566805 -21340765 - MSTA LTR MaLR -243 185 1 438 282 29 52 chr21 23566912 23567086 -21340484 + LTR33 LTR ERVL 349 518 -3 21 0 0 0 chr21 23568013 23568034 -21339536 + AT_rich Low_complexity Low_complexity 1 21 0 191 281 0 18 chr21 23570044 23570101 -21337469 + MER5A DNA MER1_type 9 64 -125 198 229 292 21 chr21 23570168 23570264 -21337306 + MER5A DNA MER1_type 44 165 -24 * 453 253 50 0 chr21 23570192 23570291 -21337279 - MER5A DNA MER1_type -77 112 9 470 333 64 68 chr21 23570613 23571190 -21336380 + HAL1 LINE L1 1128 1702 -805 269 226 12 36 chr21 23571333 23571417 -21336153 + GA-rich Low_complexity Low_complexity 2 83 0 243 209 30 15 chr21 23572126 23572193 -21335377 + MLT1K LTR MaLR 487 554 -34 1569 225 34 0 chr21 23572861 23573186 -21334384 - MLT1A1 LTR MaLR -2 363 28 1791 124 34 48 chr21 23573205 23573496 -21334074 + THE1B LTR MaLR 1 287 -77 442 273 88 70 chr21 23574985 23575373 -21332197 - MLT1J2 LTR MaLR -48 402 8 194 235 44 44 chr21 23575442 23575510 -21332060 + MIR3 SINE MIR 138 205 -3 1520 73 0 0 chr21 23576084 23576290 -21331280 - L1P LINE L1 -1679 4467 4262 * 12480 99 7 79 chr21 23576283 23578469 -21329101 - L1P LINE L1 -2406 3740 1712 7003 54 6 2 chr21 23578471 23580051 -21327519 + L1PA7 LINE L1 4564 6151 -3 452 241 0 15 chr21 23580343 23580476 -21327094 + (TATATG)n Simple_repeat Simple_repeat 6 136 0 235 131 0 49 chr21 23580476 23580537 -21327033 + LTR66 LTR ERVL 394 451 -159 28 0 0 0 chr21 23580684 23580712 -21326858 + AT_rich Low_complexity Low_complexity 1 28 0 442 213 169 0 chr21 23580807 23580943 -21326627 - Charlie7 DNA MER1_type -265 2347 2189 791 269 121 52 chr21 23580961 23581475 -21326095 - Charlie7 DNA MER1_type -1952 660 112 2075 84 8 0 chr21 23581603 23581865 -21325705 + AluSq SINE Alu 1 264 -49 279 0 0 0 chr21 23581879 23581910 -21325660 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 288 183 0 70 chr21 23581913 23581984 -21325586 - MER5A DNA MER1_type -97 92 27 320 381 26 9 chr21 23583591 23583822 -21323748 - MIR SINE MIR -3 259 25 5652 166 26 7 chr21 23584057 23586062 -21321508 + L1PA16 LINE L1 4126 6166 0 303 349 78 16 chr21 23586217 23586409 -21321161 + MIR SINE MIR 47 250 -12 471 339 104 14 chr21 23588411 23588777 -21318793 + L2 LINE L2 1530 1928 -1386 398 319 63 87 chr21 23588923 23589464 -21318106 + L2 LINE L2 2787 3309 -4 25 83 0 0 chr21 23589593 23589653 -21317917 + AT_rich Low_complexity Low_complexity 1 60 0 34 42 0 0 chr21 23589669 23589717 -21317853 + AT_rich Low_complexity Low_complexity 1 48 0 242 324 119 28 chr21 23590499 23590675 -21316895 + MIR SINE MIR 42 233 -29 1761 57 0 9 chr21 23591412 23591640 -21315930 + L1PA8 LINE L1 5939 6164 -8 220 339 46 0 chr21 23592636 23592701 -21314869 - L2 LINE L2 -19 3253 3186 760 194 43 197 chr21 23594154 23594545 -21313025 + L1MD2 LINE L1 5912 6242 0 2330 75 0 0 chr21 23595783 23596078 -21311492 - AluY SINE Alu -16 295 1 1088 149 37 0 chr21 23596461 23596676 -21310894 - L1MA8 LINE L1 0 6291 6069 26 50 0 0 chr21 23596974 23597014 -21310556 + AT_rich Low_complexity Low_complexity 1 40 0 228 159 0 23 chr21 23598963 23599007 -21308563 - L2 LINE L2 -8 3305 3263 224 295 133 0 chr21 23598975 23599080 -21308490 - MIR SINE MIR -13 249 131 * 2160 112 3 10 chr21 23599158 23599461 -21308109 + AluSx SINE Alu 1 301 -11 5028 163 28 5 chr21 23599466 23600335 -21307235 + MER49 LTR ERV1 5 893 -30 282 228 96 108 chr21 23601870 23601936 -21305634 + MER5A DNA MER1_type 1 66 -123 1545 182 14 21 chr21 23601936 23602227 -21305343 + AluJb SINE Alu 3 291 -21 282 228 96 108 chr21 23602227 23602327 -21305243 + MER5A DNA MER1_type 66 165 -24 511 302 0 2 chr21 23603701 23603852 -21303718 - MIR SINE MIR -62 146 21 331 118 15 15 chr21 23604731 23604799 -21302771 + (TCC)n Simple_repeat Simple_repeat 2 69 0 868 154 0 16 chr21 23604807 23604989 -21302581 + CT-rich Low_complexity Low_complexity 1 179 0 206 206 0 0 chr21 23604989 23605023 -21302547 + C-rich Low_complexity Low_complexity 4 37 0 2600 200 34 4 chr21 23605327 23605861 -21301709 - MER44D DNA MER2_type 0 605 1 207 0 0 0 chr21 23606117 23606140 -21301430 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 1240 194 27 18 chr21 23606318 23606649 -21300921 - L1MA4 LINE L1 0 6303 5972 7941 204 27 13 chr21 23606652 23609241 -21298329 - L1 LINE L1 -2131 4197 1535 6060 112 4 3 chr21 23609241 23610793 -21296777 + L1PA14 LINE L1 4610 6159 -2 7941 204 27 13 chr21 23610793 23612350 -21295220 - L1 LINE L1 -4793 1535 1 227 308 77 39 chr21 23612401 23612531 -21295039 - LTR16C LTR ERVL 0 491 357 586 353 45 25 chr21 23613785 23614343 -21293227 - ERVL LTR ERVL -456 5308 4740 573 205 90 0 chr21 23614385 23614551 -21293019 - L1MB3 LINE L1 -115 6068 5888 470 148 215 15 chr21 23614548 23614683 -21292887 + L1 LINE L1 4104 4265 -1881 * 641 143 0 9 chr21 23614685 23614797 -21292773 + L1MB3 LINE L1 6071 6181 -2 2265 65 51 3 chr21 23615181 23615475 -21292095 - AluY SINE Alu -3 308 1 23 33 0 0 chr21 23616560 23616590 -21290980 + AT_rich Low_complexity Low_complexity 1 30 0 202 250 62 0 chr21 23616628 23616676 -21290894 - MIR SINE MIR -79 183 133 226 193 35 0 chr21 23617304 23617361 -21290209 + MLT1J2 LTR MaLR 76 134 -316 1154 244 85 51 chr21 23617564 23617998 -21289572 + L2 LINE L2 2864 3312 -1 351 264 38 28 chr21 23618231 23618443 -21289127 + L1ME LINE L1 5602 5815 -306 1936 152 30 9 chr21 23619419 23619755 -21287815 - MER61A LTR ERV1 0 343 1 296 353 47 16 chr21 23620039 23620229 -21287341 + MLT1I LTR MaLR 74 269 -140 186 106 30 45 chr21 23620258 23620324 -21287246 + A-rich Low_complexity Low_complexity 2 66 0 435 253 144 14 chr21 23620452 23620598 -21286972 + MIR SINE MIR 71 235 -27 2437 121 3 22 chr21 23620843 23621214 -21286356 + THE1B LTR MaLR 1 364 0 1127 162 59 50 chr21 23622252 23622573 -21284997 - MER33 DNA MER1_type 0 324 1 221 282 40 24 chr21 23622992 23623116 -21284454 + L2 LINE L2 2458 2583 -731 2075 121 11 0 chr21 23623740 23624054 -21283516 - AluSx SINE Alu 0 317 1 281 271 6 22 chr21 23624266 23624447 -21283123 + GA-rich Low_complexity Low_complexity 3 180 0 23 0 0 0 chr21 23624563 23624586 -21282984 + AT_rich Low_complexity Low_complexity 1 23 0 1661 113 65 0 chr21 23625381 23625628 -21281942 - AluSx SINE Alu -14 298 36 1446 139 11 18 chr21 23625649 23625922 -21281648 + L1MA5A LINE L1 6027 6297 0 2211 155 71 30 chr21 23626034 23626499 -21281071 + MER31A LTR ERV1 1 484 -1 2243 113 7 0 chr21 23626766 23627068 -21280502 - AluSx SINE Alu -8 304 1 28 0 0 0 chr21 23627148 23627176 -21280394 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 23629032 23629055 -21278515 + AT_rich Low_complexity Low_complexity 1 23 0 1953 137 66 3 chr21 23629179 23629559 -21278011 + L1MA8 LINE L1 5885 6288 -3 3861 244 21 9 chr21 23630261 23630733 -21276837 + L1M1 LINE L1 28 493 -7072 2518 50 0 0 chr21 23630733 23631034 -21276536 + AluY SINE Alu 1 301 -10 3861 244 21 9 chr21 23631034 23631927 -21275643 + L1M1 LINE L1 493 2086 -5479 7073 197 25 33 chr21 23631934 23632307 -21275263 + L1M1 LINE L1 4269 4643 -3081 3290 79 32 5 chr21 23632307 23632748 -21274822 + MLT2A2 LTR ERVL 1 453 0 11010 114 10 1 chr21 23632751 23634312 -21273258 + THE1A-int LTR MaLR 5 1580 0 1990 139 8 43 chr21 23634312 23634680 -21272890 + THE1A LTR MaLR 1 355 0 7073 197 25 33 chr21 23634680 23635776 -21271794 + L1M1 LINE L1 4644 5747 -1977 1587 133 126 11 chr21 23635776 23636046 -21271524 - AluSg1 SINE Alu -8 301 1 7073 197 25 33 chr21 23636046 23637413 -21270157 + L1M1 LINE L1 5747 7059 -665 1712 131 10 13 chr21 23637405 23637711 -21269859 - L1M1 LINE L1 -4460 3105 2801 * 2260 172 14 45 chr21 23637685 23638128 -21269442 - L1M1 LINE L1 -6018 1547 1119 2845 189 12 9 chr21 23638138 23638703 -21268867 - L1M1 LINE L1 -6560 1005 439 6688 117 12 9 chr21 23638720 23640023 -21267547 + L1MA1 LINE L1 4983 6292 -10 719 159 62 7 chr21 23640024 23640169 -21267401 + L1MA6 LINE L1 5495 5647 -644 1946 154 68 51 chr21 23640178 23640652 -21266918 + L1MA6 LINE L1 5817 6298 -2 261 83 0 0 chr21 23641136 23641172 -21266398 + (CA)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr21 23642276 23642306 -21265264 + AT_rich Low_complexity Low_complexity 1 30 0 203 273 18 0 chr21 23644038 23644093 -21263477 - MIR SINE MIR -109 153 98 1751 72 25 0 chr21 23644424 23644659 -21262911 + L1PA7 LINE L1 5910 6150 -4 417 336 50 18 chr21 23644675 23644895 -21262675 + L2 LINE L2 1728 1954 -1360 392 360 69 36 chr21 23645215 23645604 -21261966 + L2 LINE L2 2912 3313 0 1133 196 92 40 chr21 23645681 23645964 -21261606 - MLT1A1 LTR MaLR 0 365 59 2323 155 9 36 chr21 23645964 23646402 -21261168 - MSTB LTR MaLR 0 426 1 1133 196 92 40 chr21 23646402 23646465 -21261105 - MLT1A1 LTR MaLR -306 59 1 1189 108 97 56 chr21 23646582 23646851 -21260719 + L1MA7 LINE L1 6011 6290 -1 465 256 6 6 chr21 23646878 23647034 -21260536 + L1MC4 LINE L1 7707 7862 -180 254 171 29 29 chr21 23647178 23647248 -21260322 + L3 LINE CR1 1343 1412 -165 4036 223 129 41 chr21 23648723 23650182 -21257388 + L1MDa LINE L1 16 1494 -4944 2384 86 0 0 chr21 23650336 23650627 -21256943 + AluSx SINE Alu 1 291 -21 390 232 46 46 chr21 23652210 23652361 -21255209 - LTR16C LTR ERVL 0 491 341 197 360 88 37 chr21 23652908 23653044 -21254526 - L2 LINE L2 -93 3179 3037 705 102 9 0 chr21 23653180 23653395 -21254175 - L1MA8 LINE L1 -4 6287 6028 25 0 0 0 chr21 23654150 23654175 -21253395 + AT_rich Low_complexity Low_complexity 1 25 0 223 286 0 0 chr21 23654403 23654459 -21253111 - L2 LINE L2 -1 3312 3257 26 50 0 0 chr21 23657045 23657085 -21250485 + AT_rich Low_complexity Low_complexity 1 40 0 2552 110 102 0 chr21 23657090 23657491 -21250079 - L1PB1 LINE L1 -1 6150 5709 192 350 132 38 chr21 23659048 23659683 -21247887 - L2 LINE L2 -1084 2230 1536 455 332 79 9 chr21 23659701 23659930 -21247640 - MIR SINE MIR 0 262 18 749 335 120 35 chr21 23660594 23661387 -21246183 + L2 LINE L2 2069 2928 -386 338 305 24 80 chr21 23661621 23661870 -21245700 + MIR SINE MIR 2 236 -26 238 273 93 73 chr21 23664320 23664470 -21243100 + MIR SINE MIR 47 199 -63 328 329 110 37 chr21 23664474 23665034 -21242536 - L2 LINE L2 -19 3294 2581 30582 111 9 12 chr21 23665065 23666947 -21240623 + L1PA7 LINE L1 1067 2953 -4639 207 0 0 0 chr21 23666947 23666970 -21240600 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 30582 111 9 12 chr21 23666970 23670788 -21236782 + L1PA7 LINE L1 2953 7588 -4 2111 97 0 52 chr21 23670788 23671097 -21236473 + AluSc SINE Alu 1 293 -16 404 303 131 48 chr21 23671301 23671736 -21235834 - L2 LINE L2 -809 2505 2035 18283 183 16 17 chr21 23671764 23677356 -21230214 + L1PA14 LINE L1 2002 7594 -5 1100 244 20 0 chr21 23677792 23678144 -21229426 + L1 LINE L1 3080 3438 -2708 262 290 65 36 chr21 23678491 23678629 -21228941 + MIR SINE MIR 52 193 -69 977 225 55 18 chr21 23679330 23679572 -21227998 - MIR SINE MIR -10 252 4 616 147 0 66 chr21 23679659 23679795 -21227775 - Charlie5 DNA MER1_type -27 2585 2459 941 175 69 0 chr21 23679795 23679984 -21227586 + MLT2C2 LTR ERVL 1 202 -262 1767 154 17 30 chr21 23679997 23680296 -21227274 + AluJb SINE Alu 6 300 -12 1618 150 116 32 chr21 23680341 23680687 -21226883 - THE1C LTR MaLR 0 375 1 9539 125 22 36 chr21 23680687 23682287 -21225283 - THE1C-int LTR MaLR 0 1580 3 1872 143 63 33 chr21 23682289 23682653 -21224917 - THE1C LTR MaLR 0 375 1 955 239 133 48 chr21 23682653 23682983 -21224587 - MLT1A2 LTR MaLR -16 358 1 911 195 5 6 chr21 23682984 23683167 -21224403 + MLT2C2 LTR ERVL 243 393 -21 369 0 0 0 chr21 23683173 23683214 -21224356 + (TG)n Simple_repeat Simple_repeat 2 42 0 262 281 11 0 chr21 23683236 23683325 -21224245 - L1MC4 LINE L1 -1339 6703 6614 219 285 13 7 chr21 23683325 23683476 -21224094 + (TA)n Simple_repeat Simple_repeat 2 153 0 22 35 0 0 chr21 23683484 23683513 -21224057 + AT_rich Low_complexity Low_complexity 1 29 0 990 205 9 5 chr21 23683548 23683757 -21223813 - MER33 DNA MER1_type -251 73 1 363 295 123 0 chr21 23683874 23683996 -21223574 + MIR SINE MIR 106 242 -20 2199 0 0 0 chr21 23683996 23684240 -21223330 + L1HS LINE L1 5912 6155 0 198 247 182 13 chr21 23684337 23684414 -21223156 + L2 LINE L2 3183 3272 0 1405 232 106 49 chr21 23684890 23685382 -21222188 - MLT2B1 LTR ERVL 0 520 1 465 100 0 111 chr21 23685913 23686003 -21221567 - MADE1 DNA Mariner 0 80 1 1196 185 81 15 chr21 23686942 23687061 -21220509 + AluJo SINE Alu 2 112 -200 916 67 30 0 chr21 23687061 23687196 -21220374 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 1196 185 81 15 chr21 23687196 23687335 -21220235 + AluJo SINE Alu 112 277 -35 1807 155 3 23 chr21 23687456 23687760 -21219810 - AluJb SINE Alu -14 298 1 383 282 100 0 chr21 23688047 23688157 -21219413 - L2 LINE L2 0 3313 3193 240 111 0 0 chr21 23688202 23688238 -21219332 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 220 397 0 0 chr21 23688260 23688328 -21219242 + MIR SINE MIR 5 72 -190 221 0 35 0 chr21 23688352 23688381 -21219189 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 21 36 0 0 chr21 23688888 23688916 -21218654 + AT_rich Low_complexity Low_complexity 1 28 0 435 147 4 2 chr21 23689238 23689470 -21218100 + AluSx SINE Alu 1 289 -21 784 206 0 24 chr21 23690229 23690394 -21217176 + L1MC1 LINE L1 6171 6331 -2 341 274 37 65 chr21 23690590 23690805 -21216765 + L1P3 LINE L1 5316 5524 -648 1752 121 111 7 chr21 23692173 23692453 -21215117 - AluSg1 SINE Alu 0 309 1 462 342 55 60 chr21 23692591 23692994 -21214576 - L1MC/D LINE L1 -1987 5821 5421 258 32 0 0 chr21 23693554 23693585 -21213985 + (TA)n Simple_repeat Simple_repeat 1 31 0 1362 200 19 91 chr21 23693850 23694225 -21213345 + MLT1A2 LTR MaLR 27 374 0 180 176 0 0 chr21 23695106 23695140 -21212430 + T-rich Low_complexity Low_complexity 1 34 0 1502 281 60 25 chr21 23696210 23696723 -21210847 + L2 LINE L2 2447 2977 -337 235 299 10 31 chr21 23697890 23697987 -21209583 + HAL1 LINE L1 812 906 -1601 336 121 69 0 chr21 23698070 23698128 -21209442 + MLT1A1 LTR MaLR 304 365 0 2429 130 5 13 chr21 23698133 23698511 -21209059 + THE1C LTR MaLR 1 375 0 2062 191 62 5 chr21 23698755 23699204 -21208366 + L1MB7 LINE L1 5524 5998 -186 356 356 11 0 chr21 23699487 23699661 -21207909 - L1ME LINE L1 -481 5640 5465 1630 230 76 29 chr21 23700073 23700521 -21207049 - MLT1E2 LTR MaLR -12 614 146 2787 74 0 0 chr21 23700619 23700984 -21206586 - L1PA7 LINE L1 -5 6149 5785 333 261 97 92 chr21 23701016 23701254 -21206316 + L1ME4a LINE L1 5616 5854 -267 418 172 126 0 chr21 23701276 23701363 -21206207 - U13 snRNA snRNA -6 98 1 650 139 104 0 chr21 23702219 23702334 -21205236 - MLT1A2 LTR MaLR -244 130 4 594 239 161 0 chr21 23703226 23703381 -21204189 + MER5A DNA MER1_type 9 188 -1 394 288 99 21 chr21 23703509 23703700 -21203870 - MLT1J LTR MaLR -74 437 232 1629 175 48 40 chr21 23703710 23704082 -21203488 + THE1C LTR MaLR 1 375 0 9425 134 25 36 chr21 23704088 23705660 -21201910 + THE1C-int LTR MaLR 21 1574 -6 1772 155 82 25 chr21 23705665 23706020 -21201550 + THE1C LTR MaLR 1 375 0 285 254 14 0 chr21 23706037 23706108 -21201462 + MLT2E LTR ERVL 557 628 0 305 385 35 35 chr21 23706497 23706757 -21200813 + L2 LINE L2 2820 3079 -193 2541 126 26 35 chr21 23707023 23707413 -21200157 + MSTA LTR MaLR 1 388 -40 2132 128 7 0 chr21 23707413 23707710 -21199860 - AluSx SINE Alu -13 299 1 2541 126 26 35 chr21 23707710 23707747 -21199823 + MSTA LTR MaLR 388 424 -4 1646 170 29 0 chr21 23707887 23708163 -21199407 + AluJb SINE Alu 1 284 -28 1684 233 93 73 chr21 23708176 23709135 -21198435 + L1M4 LINE L1 3496 4473 -1673 6498 153 35 17 chr21 23709187 23711353 -21196217 - L1MA7 LINE L1 0 6291 4082 6330 206 31 22 chr21 23711350 23714015 -21193555 + L1M2 LINE L1 959 3649 -3139 * 925 153 0 25 chr21 23714015 23714172 -21193398 + AluSq SINE Alu 1 153 -160 993 85 0 0 chr21 23714196 23714326 -21193244 - THE1B LTR MaLR -28 336 207 1162 143 112 0 chr21 23714326 23714522 -21193048 + AluSg/x SINE Alu 88 305 -7 11287 164 38 15 chr21 23714531 23716963 -21190607 + L1M2 LINE L1 3649 6139 -743 203 175 25 0 chr21 23717011 23717051 -21190519 + GA-rich Low_complexity Low_complexity 2 42 0 254 278 120 38 chr21 23717112 23717245 -21190325 + L2 LINE L2 3104 3247 -25 225 184 20 20 chr21 23717245 23717294 -21190276 + GA-rich Low_complexity Low_complexity 4 52 0 1659 79 0 0 chr21 23717896 23718099 -21189471 - AluY SINE Alu -108 203 1 914 26 9 0 chr21 23718974 23719087 -21188483 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 223 297 14 14 chr21 23720020 23720094 -21187476 + L2 LINE L2 2939 3012 -260 764 291 134 34 chr21 23720347 23720894 -21186676 - L2 LINE L2 -2 3311 2698 270 329 0 14 chr21 23721835 23721908 -21185662 + MIR SINE MIR 34 105 -103 382 248 257 24 chr21 23721915 23722121 -21185449 - MIR SINE MIR -3 259 6 874 205 27 9 chr21 23723121 23723345 -21184225 - L1MA7 LINE L1 -7 6284 6057 1271 201 46 130 chr21 23723494 23723789 -21183781 + L1ME3A LINE L1 5665 5894 -276 2185 100 4 0 chr21 23723789 23724068 -21183502 + AluSp SINE Alu 1 280 -33 1271 201 46 130 chr21 23724068 23724319 -21183251 + L1ME3A LINE L1 5894 6165 -5 4791 118 20 1 chr21 23724335 23724448 -21183122 + L1PA16 LINE L1 5374 5483 -683 2330 88 3 10 chr21 23724448 23724755 -21182815 + AluSp SINE Alu 1 305 -8 4791 118 20 1 chr21 23724755 23725372 -21182198 + L1PA16 LINE L1 5483 6118 -48 259 291 0 35 chr21 23725372 23725458 -21182112 - MIR SINE MIR -2 260 178 583 284 7 0 chr21 23725601 23725749 -21181821 + MIR SINE MIR 104 252 -10 499 259 148 19 chr21 23726128 23726344 -21181226 + MIR SINE MIR 3 246 -16 2463 90 0 0 chr21 23726376 23726688 -21180882 + AluSx SINE Alu 1 312 0 1850 144 10 24 chr21 23727719 23728010 -21179560 + AluJo SINE Alu 11 297 -15 1971 311 30 5 chr21 23729129 23729734 -21177836 + MER115 DNA AcHobo 44 663 -30 6193 79 6 6 chr21 23729890 23730728 -21176842 + L1PA11 LINE L1 5334 6171 -3 1426 182 51 91 chr21 23731354 23731728 -21175842 - MLT1A1 LTR MaLR -6 359 1 793 304 107 31 chr21 23731736 23732183 -21175387 + MLT1H1 LTR MaLR 67 547 -8 1751 128 19 0 chr21 23733087 23733344 -21174226 - THE1C LTR MaLR 0 375 114 943 67 7 0 chr21 23733373 23733508 -21174062 - THE1C-int LTR MaLR 0 1580 1445 1987 124 32 39 chr21 23733511 23733849 -21173721 - THE1B LTR MaLR -28 336 1 302 253 0 13 chr21 23734709 23734784 -21172786 + LTR33 LTR ERVL 48 121 -400 1795 141 51 43 chr21 23734790 23735160 -21172410 + THE1C LTR MaLR 1 373 -2 1685 191 33 68 chr21 23735412 23735841 -21171729 + MLT2D LTR ERVL 1 414 0 237 308 165 0 chr21 23735972 23736063 -21171507 - MLT1J LTR MaLR -96 415 310 1611 163 4 4 chr21 23736162 23736420 -21171150 + AluJo SINE Alu 31 288 -24 225 261 31 0 chr21 23736472 23736537 -21171033 - MLT1J2 LTR MaLR -308 142 76 24 67 0 0 chr21 23737089 23737134 -21170436 + AT_rich Low_complexity Low_complexity 1 45 0 899 225 11 11 chr21 23738975 23739166 -21168404 - MIR SINE MIR -5 257 67 509 241 18 0 chr21 23739729 23739841 -21167729 - MER81 DNA DNA 0 114 1 471 309 49 34 chr21 23739864 23740114 -21167456 + MIR SINE MIR 3 259 -3 25 90 0 0 chr21 23740653 23740720 -21166850 + AT_rich Low_complexity Low_complexity 1 67 0 27 0 0 0 chr21 23741408 23741435 -21166135 + AT_rich Low_complexity Low_complexity 1 27 0 192 77 0 0 chr21 23742797 23742823 -21164747 + (A)n Simple_repeat Simple_repeat 1 26 0 1849 125 57 4 chr21 23742840 23743120 -21164450 + AluJo SINE Alu 6 300 -12 189 0 0 0 chr21 23743120 23743141 -21164429 + (TA)n Simple_repeat Simple_repeat 1 21 0 1978 185 39 59 chr21 23743793 23744301 -21163269 + MLT1D LTR MaLR 1 498 -7 39 50 0 0 chr21 23744563 23744623 -21162947 + AT_rich Low_complexity Low_complexity 1 60 0 2397 135 70 2 chr21 23744913 23745314 -21162256 - MSTA LTR MaLR 0 428 1 270 376 8 45 chr21 23745504 23745637 -21161933 + L2 LINE L2 3145 3272 0 2131 161 44 125 chr21 23745892 23745932 -21161638 - MLT2B1 LTR ERVL 0 520 478 441 0 0 0 chr21 23745932 23745981 -21161589 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2131 161 44 125 chr21 23745981 23746506 -21161064 - MLT2B1 LTR ERVL -42 478 1 2445 208 58 44 chr21 23746887 23747273 -21160297 - MLT1E2 LTR MaLR 0 626 226 180 0 0 0 chr21 23747273 23747293 -21160277 + (CTG)n Simple_repeat Simple_repeat 3 22 0 2445 208 58 44 chr21 23747293 23747523 -21160047 - MLT1E2 LTR MaLR -400 226 1 523 165 42 21 chr21 23748183 23748321 -21159249 + L1MA9 LINE L1 6161 6287 -4 334 276 155 51 chr21 23748685 23749175 -21158395 - L1M4 LINE L1 -2816 3330 2790 21 57 0 0 chr21 23749275 23749310 -21158260 + AT_rich Low_complexity Low_complexity 1 35 0 23582 149 34 9 chr21 23749463 23754416 -21153154 + L1M1 LINE L1 18 4844 -2880 465 84 0 158 chr21 23754416 23754511 -21153059 - MADE1 DNA Mariner 0 80 1 23582 149 34 9 chr21 23754511 23754859 -21152711 + L1M1 LINE L1 4844 5182 -2542 2215 113 7 0 chr21 23754859 23755161 -21152409 + AluSg1 SINE Alu 3 306 -3 23582 149 34 9 chr21 23755161 23756835 -21150735 + L1M1 LINE L1 5182 7177 -547 362 335 66 55 chr21 23756909 23757231 -21150339 + L2 LINE L2 1570 1900 -1414 2232 131 0 3 chr21 23757231 23757544 -21150026 - AluSx SINE Alu 0 312 1 362 335 66 55 chr21 23757544 23757674 -21149896 + L2 LINE L2 1900 2027 -1287 449 254 0 0 chr21 23757774 23757888 -21149682 - L1ME LINE L1 -450 5671 5558 530 362 129 28 chr21 23758006 23758087 -21149483 + L2 LINE L2 2033 2104 -1210 1820 131 60 0 chr21 23758087 23758369 -21149201 + AluSx SINE Alu 2 300 -12 530 362 129 28 chr21 23758369 23759132 -21148438 + L2 LINE L2 2104 2962 -352 22 56 0 0 chr21 23759288 23759324 -21148246 + AT_rich Low_complexity Low_complexity 1 36 0 184 271 85 0 chr21 23759353 23759412 -21148158 - L3 LINE CR1 -323 1254 1191 277 370 27 27 chr21 23759856 23760002 -21147568 - L2 LINE L2 0 3272 3127 1253 223 152 34 chr21 23760338 23760786 -21146784 - MLT1D LTR MaLR 0 505 5 834 237 93 22 chr21 23760794 23761064 -21146506 + L2 LINE L2 2626 2914 -400 1524 223 31 80 chr21 23761084 23761623 -21145947 + MLT2B1 LTR ERVL 1 513 -7 361 242 0 135 chr21 23761626 23761699 -21145871 + L2 LINE L2 3152 3189 -124 7049 41 17 46 chr21 23761699 23762664 -21144906 - L1PA7 LINE L1 0 6154 5198 3611 194 50 49 chr21 23762664 23763617 -21143953 - LTR13 LTR ERVK 0 954 1 7049 41 17 46 chr21 23763617 23763750 -21143820 - L1PA7 LINE L1 -956 5198 5063 361 242 0 135 chr21 23763750 23763854 -21143716 + L2 LINE L2 3189 3305 -8 2430 72 0 0 chr21 23764329 23764622 -21142948 + AluSp SINE Alu 1 293 -20 362 239 0 83 chr21 23765501 23765519 -21142051 + HAL1 LINE L1 766 784 -1723 2543 216 10 6 chr21 23765519 23765959 -21141611 + MLT2B2 LTR ERVL 4 448 -67 246 32 0 0 chr21 23765959 23765990 -21141580 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2543 216 10 6 chr21 23765990 23766059 -21141511 + MLT2B2 LTR ERVL 448 515 0 362 239 0 83 chr21 23766059 23766149 -21141421 + HAL1 LINE L1 784 865 -1642 369 256 75 62 chr21 23766584 23766744 -21140826 + HAL1 LINE L1 1032 1193 -1314 640 281 76 68 chr21 23766749 23767154 -21140416 + HAL1 LINE L1 1170 1583 -924 1062 222 18 14 chr21 23767154 23767375 -21140195 + MER58A DNA MER1_type 2 223 -1 640 281 76 68 chr21 23767375 23767571 -21139999 + HAL1 LINE L1 1583 1776 -731 312 278 0 65 chr21 23767843 23767951 -21139619 + HAL1b LINE L1 749 849 -499 1086 278 26 13 chr21 23768253 23768638 -21138932 - L1MEc LINE L1 -4576 2562 2173 520 97 0 0 chr21 23768660 23768732 -21138838 - Alu SINE Alu -8 301 230 970 129 0 14 chr21 23768732 23768871 -21138699 - AluSq/x SINE Alu -172 141 5 1371 217 70 63 chr21 23768885 23769539 -21138031 - L1MEc LINE L1 -4870 1985 1327 3453 187 90 76 chr21 23770066 23771121 -21136449 + LTR28 LTR ERV1 1 1709 -46 37 0 0 0 chr21 23771270 23771307 -21136263 + AT_rich Low_complexity Low_complexity 1 37 0 235 209 23 35 chr21 23771308 23771394 -21136176 - L1MEc LINE L1 -6663 196 112 426 274 186 28 chr21 23771552 23771727 -21135843 + L1MC/D LINE L1 2897 3043 -3103 189 74 0 0 chr21 23771727 23771754 -21135816 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 426 274 186 28 chr21 23771754 23771896 -21135674 + L1MC/D LINE L1 3043 3264 -2882 534 242 42 0 chr21 23771897 23772017 -21135553 + L2 LINE L2 3189 3313 0 959 256 50 5 chr21 23772616 23772903 -21134667 + L1MC/D LINE L1 5363 5666 -455 1570 186 45 45 chr21 23772903 23773300 -21134270 + MLT2C1 LTR ERVL 1 397 0 297 101 174 14 chr21 23773324 23773393 -21134177 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr21 23773424 23773445 -21134125 + AT_rich Low_complexity Low_complexity 1 21 0 195 242 0 0 chr21 23773624 23773686 -21133884 + (CATA)n Simple_repeat Simple_repeat 2 63 0 208 255 0 0 chr21 23773720 23773767 -21133803 + A-rich Low_complexity Low_complexity 4 50 0 991 159 37 7 chr21 23774167 23774452 -21133118 + L1MA9 LINE L1 5901 6290 -22 25 65 0 0 chr21 23774452 23774498 -21133072 + AT_rich Low_complexity Low_complexity 1 46 0 2460 144 38 17 chr21 23774564 23774981 -21132589 - MSTB LTR MaLR 0 426 1 8727 169 16 17 chr21 23774994 23776223 -21131347 - MSTB-int LTR MaLR -14 1637 408 2047 144 6 10 chr21 23776223 23776535 -21131035 - AluSx SINE Alu 0 312 2 8727 169 16 17 chr21 23776535 23776942 -21130628 - MSTB-int LTR MaLR -1243 408 2 2150 144 72 10 chr21 23776950 23777340 -21130230 - MSTB LTR MaLR -12 414 1 1665 181 97 50 chr21 23777464 23777939 -21129631 - MLT1D LTR MaLR -6 499 3 465 19 0 0 chr21 23778496 23778550 -21129020 + (CA)n Simple_repeat Simple_repeat 2 55 0 948 226 16 27 chr21 23779201 23779458 -21128112 - MLT2B1 LTR ERVL -266 254 1 189 0 0 0 chr21 23779785 23779806 -21127764 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 190 7 7 chr21 23779865 23780165 -21127405 + AluJb SINE Alu 1 300 -12 2293 149 22 19 chr21 23780920 23781336 -21126234 - MSTB LTR MaLR -9 417 1 932 313 131 14 chr21 23782132 23782627 -21124943 - L2 LINE L2 -407 2907 2355 2639 115 44 5 chr21 23782711 23783121 -21124449 - MSTA LTR MaLR 0 428 3 1602 203 3 32 chr21 23783487 23783797 -21123773 + AluJo SINE Alu 1 301 -11 1340 203 62 62 chr21 23784716 23785106 -21122464 + MLT1B LTR MaLR 1 390 0 3749 241 89 39 chr21 23785106 23786402 -21121168 + MLT1B-int LTR MaLR 1 1361 -10 814 124 23 4 chr21 23786438 23786583 -21120987 + L1PA16 LINE L1 5737 5879 -287 794 172 128 65 chr21 23786590 23786910 -21120660 + MLT1A2 LTR MaLR 43 467 0 5430 134 25 15 chr21 23787016 23787921 -21119649 + L1PA16 LINE L1 5021 5946 -220 1858 124 62 4 chr21 23787921 23788195 -21119375 + AluSx SINE Alu 1 290 -22 5430 134 25 15 chr21 23788195 23788414 -21119156 + L1PA16 LINE L1 5946 6161 -5 1392 155 5 112 chr21 23789971 23790346 -21117224 - MLT1B LTR MaLR -2 388 54 368 77 0 154 chr21 23790386 23790464 -21117106 - MLT1B LTR MaLR -324 66 1 2115 99 13 32 chr21 23790536 23790849 -21116721 - AluY SINE Alu -4 307 1 244 268 134 63 chr21 23790855 23790898 -21116672 - MIR SINE MIR -50 212 173 1339 217 36 56 chr21 23790898 23791289 -21116281 - MLT1B LTR MaLR -4 386 4 244 268 134 63 chr21 23791289 23791372 -21116198 - MIR SINE MIR -89 173 77 910 235 37 49 chr21 23791770 23792013 -21115557 + MIR SINE MIR 22 261 -1 286 258 0 0 chr21 23794194 23794256 -21113314 - MIR SINE MIR -66 142 81 225 83 0 0 chr21 23795093 23795129 -21112441 + (A)n Simple_repeat Simple_repeat 1 36 0 327 295 26 0 chr21 23795140 23795218 -21112352 - L2 LINE L2 -30 3242 3163 295 214 10 117 chr21 23795999 23796102 -21111468 + MIR3 SINE MIR 111 202 -6 661 302 28 12 chr21 23797076 23797324 -21110246 + MIR SINE MIR 11 262 0 687 257 51 14 chr21 23797797 23798011 -21109559 - MIR SINE MIR -1 261 40 370 332 63 10 chr21 23798017 23798222 -21109348 - L1MC4 LINE L1 -44 7998 7783 23 33 0 0 chr21 23799351 23799381 -21108189 + AT_rich Low_complexity Low_complexity 1 30 0 459 184 14 75 chr21 23801895 23802042 -21105528 + L1MB3 LINE L1 6044 6181 -2 2231 104 0 10 chr21 23802165 23802462 -21105108 - AluSg SINE Alu -16 294 1 198 0 0 0 chr21 23803268 23803290 -21104280 + (TA)n Simple_repeat Simple_repeat 2 23 0 332 257 125 37 chr21 23805896 23806032 -21101538 + MIR SINE MIR 48 195 -67 2174 132 0 0 chr21 23806654 23806950 -21100620 + AluSx SINE Alu 1 296 -16 403 267 89 14 chr21 23807202 23807348 -21100222 + MIR SINE MIR 90 246 -16 372 119 0 0 chr21 23807639 23807698 -21099872 + (TG)n Simple_repeat Simple_repeat 2 60 0 206 31 0 31 chr21 23808214 23808246 -21099324 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2326 84 0 7 chr21 23808253 23808550 -21099020 - AluSx SINE Alu -17 295 1 358 257 66 72 chr21 23809018 23809170 -21098400 - MER5A DNA MER1_type -32 157 7 39 50 0 0 chr21 23810211 23810271 -21097299 + AT_rich Low_complexity Low_complexity 1 60 0 301 276 133 10 chr21 23810456 23810652 -21096918 + L1MC/D LINE L1 5583 5802 -2006 536 298 19 72 chr21 23810749 23811179 -21096391 + L1M4 LINE L1 2137 2543 -3603 352 239 164 0 chr21 23811199 23811333 -21096237 + L1 LINE L1 2202 2357 -3789 2326 85 3 0 chr21 23811333 23811626 -21095944 - AluY SINE Alu -17 294 1 416 294 21 21 chr21 23811671 23811814 -21095756 + L1 LINE L1 4670 4812 -1334 2417 80 0 0 chr21 23811880 23812179 -21095391 + AluSq SINE Alu 1 299 -14 250 248 7 66 chr21 23812191 23812328 -21095242 + L1 LINE L1 4906 5034 -1112 2375 104 0 3 chr21 23812502 23812810 -21094760 - AluSx SINE Alu -5 307 1 1889 154 0 33 chr21 23812845 23813151 -21094419 + AluSx SINE Alu 1 296 -16 205 50 50 25 chr21 23813152 23813192 -21094378 + (TA)n Simple_repeat Simple_repeat 1 41 0 369 0 0 0 chr21 23813192 23813233 -21094337 + (CA)n Simple_repeat Simple_repeat 2 42 0 559 302 147 22 chr21 23813248 23813817 -21093753 + L1ME3 LINE L1 5302 5940 -222 462 287 151 25 chr21 23814179 23814496 -21093074 - LTR67 LTR ERVL -199 358 2 953 273 133 53 chr21 23815054 23816028 -21091542 + HAL1 LINE L1 735 1786 -721 239 225 38 25 chr21 23816147 23816227 -21091343 + L1ME LINE L1 5502 5582 -539 336 319 238 14 chr21 23816287 23816497 -21091073 + MIR SINE MIR 2 258 -4 30 45 0 0 chr21 23816814 23816858 -21090712 + AT_rich Low_complexity Low_complexity 1 44 0 434 343 85 33 chr21 23817916 23818187 -21089383 + L2 LINE L2 2987 3271 -1 23 0 0 0 chr21 23818405 23818428 -21089142 + AT_rich Low_complexity Low_complexity 1 23 0 2310 93 0 3 chr21 23819189 23819491 -21088079 + AluY SINE Alu 1 301 -10 267 54 0 0 chr21 23820236 23820273 -21087297 + AluSc SINE Alu 192 228 -71 1045 73 0 0 chr21 23820581 23820705 -21086865 - AluSg/x SINE Alu -16 294 171 1046 285 85 40 chr21 23820970 23821442 -21086128 - L2 LINE L2 -385 2929 2428 1580 95 41 0 chr21 23821442 23821663 -21085907 + MER30 DNA MER1_type 1 230 0 1046 285 85 40 chr21 23821663 23821734 -21085836 - L2 LINE L2 -886 2428 2362 4944 181 34 41 chr21 23821739 23823566 -21084004 + L1MD1 LINE L1 4432 6241 -1 435 294 129 68 chr21 23825164 23825399 -21082171 + L2 LINE L2 1783 2002 -1312 1902 166 19 3 chr21 23825399 23825706 -21081864 - AluJo SINE Alu 0 312 1 435 294 129 68 chr21 23825706 23826201 -21081369 + L2 LINE L2 2002 2557 -757 230 284 164 0 chr21 23826203 23826270 -21081300 + MIR SINE MIR 2 79 -183 864 184 82 4 chr21 23826739 23826994 -21080576 + MER33 DNA MER1_type 46 320 -4 2528 44 0 0 chr21 23827260 23827557 -21080013 - AluY SINE Alu -14 297 1 787 164 0 22 chr21 23829479 23829613 -21077957 + FLAM_A SINE Alu 1 131 -2 286 236 45 11 chr21 23829786 23829875 -21077695 + CT-rich Low_complexity Low_complexity 3 94 0 218 330 9 47 chr21 23829879 23829985 -21077585 - MIR SINE MIR -155 107 6 360 103 0 0 chr21 23830789 23830847 -21076723 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2010 119 0 0 chr21 23831308 23831577 -21075993 + AluSx SINE Alu 36 304 -8 21 0 0 0 chr21 23831732 23831753 -21075817 + AT_rich Low_complexity Low_complexity 1 21 0 2333 74 0 3 chr21 23831985 23832282 -21075288 + AluY SINE Alu 1 296 -15 26 30 0 0 chr21 23832631 23832664 -21074906 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 23832966 23832987 -21074583 + AT_rich Low_complexity Low_complexity 1 21 0 984 262 26 0 chr21 23833428 23833657 -21073913 + MIR SINE MIR 28 262 0 202 152 0 0 chr21 23833687 23833720 -21073850 - L2 LINE L2 -9 3304 3272 1544 150 133 26 chr21 23834016 23834355 -21073215 + THE1C LTR MaLR 1 375 0 221 360 93 50 chr21 23834360 23834682 -21072888 - L2 LINE L2 -419 2895 2560 1255 134 0 0 chr21 23835261 23835440 -21072130 + AluSg/x SINE Alu 126 304 -8 22 0 0 0 chr21 23835746 23835768 -21071802 + AT_rich Low_complexity Low_complexity 1 22 0 454 268 24 24 chr21 23835903 23836026 -21071544 + L2 LINE L2 3147 3269 -3 191 314 157 39 chr21 23836110 23836212 -21071358 + L2 LINE L2 3200 3313 0 1038 175 128 13 chr21 23836809 23837043 -21070527 + AluJo SINE Alu 27 287 -25 664 113 56 63 chr21 23837271 23837413 -21070157 - AluJo SINE Alu -145 167 27 203 312 0 13 chr21 23838318 23838395 -21069175 + C-rich Low_complexity Low_complexity 86 161 0 352 238 48 0 chr21 23839302 23839386 -21068184 + L2 LINE L2 3211 3298 -15 198 0 0 0 chr21 23839388 23839410 -21068160 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 198 291 181 16 chr21 23840126 23840253 -21067317 - MIR SINE MIR -27 235 88 2465 258 61 38 chr21 23840381 23841553 -21066017 + L1MC4 LINE L1 6843 8042 0 412 281 69 62 chr21 23841564 23841824 -21065746 - MLT1I LTR MaLR -50 359 98 1475 180 73 15 chr21 23841946 23842218 -21065352 + AluJb SINE Alu 13 300 -12 431 246 130 43 chr21 23842653 23843038 -21064532 - LTR16B LTR ERVL 0 464 18 240 111 0 0 chr21 23843277 23843313 -21064257 + (TA)n Simple_repeat Simple_repeat 1 36 0 6754 62 29 0 chr21 23843313 23844656 -21062914 - L1PA6 LINE L1 -19 6135 4773 279 0 0 0 chr21 23844711 23844742 -21062828 + (TG)n Simple_repeat Simple_repeat 1 31 0 320 272 61 54 chr21 23845081 23845228 -21062342 - MIR3 SINE MIR -7 201 54 2540 44 0 25 chr21 23845296 23845672 -21061898 + AluY SINE Alu 1 368 0 339 25 0 0 chr21 23846289 23846329 -21061241 + (TC)n Simple_repeat Simple_repeat 2 41 0 372 270 36 15 chr21 23846358 23846495 -21061075 - L1MC/D LINE L1 -2101 5707 5568 2511 198 94 29 chr21 23847671 23848568 -21059002 + L1MB8 LINE L1 3064 4018 -2128 1198 217 11 0 chr21 23848591 23848858 -21058712 + L1MB8 LINE L1 5388 5657 -527 944 120 0 0 chr21 23848869 23848994 -21058576 + FLAM_C SINE Alu 12 136 -7 2685 167 15 9 chr21 23848994 23849520 -21058050 + L1MB8 LINE L1 5650 6178 0 607 314 67 5 chr21 23849696 23849919 -21057651 + MIR SINE MIR 23 259 -3 2062 158 77 47 chr21 23850231 23850724 -21056846 - MLT2B1 LTR ERVL -12 508 1 2771 137 34 60 chr21 23850725 23851322 -21056248 - ERVL-B1 LTR ERVL -8 5756 5176 926 133 7 0 chr21 23851330 23851465 -21056105 - AluJo SINE Alu -176 136 1 12232 150 18 15 chr21 23851466 23852919 -21054651 - ERVL-B1 LTR ERVL -574 5190 3728 1924 132 7 0 chr21 23852919 23853200 -21054370 - AluJo SINE Alu 0 312 30 12232 150 18 15 chr21 23853200 23853849 -21053721 - ERVL-B1 LTR ERVL -2036 3728 3082 453 168 0 84 chr21 23853846 23853965 -21053605 - ERVL LTR ERVL -4879 885 777 * 557 213 69 23 chr21 23854409 23854637 -21052933 - MER106B DNA MER1_type 0 1059 1 453 221 250 0 chr21 23854786 23854926 -21052644 + MER5A DNA MER1_type 15 189 0 205 217 14 58 chr21 23854864 23854933 -21052637 - MER5A DNA MER1_type -116 73 8 * 2143 148 11 8 chr21 23855644 23856003 -21051567 + MLT1A1 LTR MaLR 1 360 -5 2219 101 0 7 chr21 23856688 23856976 -21050594 + AluSx SINE Alu 1 286 -26 2217 119 3 0 chr21 23857151 23857446 -21050124 + AluSx SINE Alu 1 296 -16 1935 153 0 10 chr21 23857466 23857754 -21049816 + AluSx SINE Alu 4 288 -24 332 324 152 12 chr21 23859112 23859368 -21048202 + L1ME4a LINE L1 5573 5864 -257 297 355 43 14 chr21 23859375 23859516 -21048054 + MIR3 SINE MIR 3 147 -61 400 375 27 48 chr21 23859668 23859961 -21047609 - L2 LINE L2 0 3272 2986 678 133 0 0 chr21 23860055 23860160 -21047410 - MLT1A2 LTR MaLR 0 374 270 1547 186 22 16 chr21 23860168 23860319 -21047251 - MLT1A1 LTR MaLR -26 339 190 1654 184 31 0 chr21 23860319 23860607 -21046963 - AluJb SINE Alu -14 298 2 1547 186 22 16 chr21 23860607 23860778 -21046792 - MLT1A1 LTR MaLR -175 190 15 571 280 31 31 chr21 23860779 23860972 -21046598 + MIR SINE MIR 70 262 0 292 300 213 23 chr21 23861132 23861485 -21046085 + L2 LINE L2 2828 3247 -25 1597 213 13 43 chr21 23862238 23862459 -21045111 - MLT1A1 LTR MaLR 0 365 158 2187 137 0 3 chr21 23862459 23862772 -21044798 - AluSx SINE Alu 0 312 1 1597 213 13 43 chr21 23862772 23862926 -21044644 - MLT1A1 LTR MaLR -207 158 1 458 307 138 5 chr21 23862926 23863144 -21044426 + MIR SINE MIR 14 260 -2 2203 136 0 0 chr21 23863158 23863459 -21044111 - AluSx SINE Alu -11 301 1 323 319 0 0 chr21 23863790 23863881 -21043689 + MIR SINE MIR 54 144 -64 2329 81 0 0 chr21 23864156 23864441 -21043129 + AluSx SINE Alu 20 304 -8 2326 91 3 0 chr21 23864817 23865113 -21042457 + AluSx SINE Alu 1 297 -15 1575 184 83 54 chr21 23865805 23866250 -21041320 + MER31B LTR ERV1 5 462 -4 4527 115 13 16 chr21 23866260 23866953 -21040617 + LTR8 LTR ERV1 1 691 0 644 132 46 46 chr21 23866953 23867094 -21040476 + L1MA4 LINE L1 6157 6300 0 23 0 0 0 chr21 23867094 23867117 -21040453 + AT_rich Low_complexity Low_complexity 1 23 0 180 288 12 38 chr21 23867197 23867277 -21040293 + L2 LINE L2 1882 1959 -1355 210 351 0 14 chr21 23867469 23867543 -21040027 + MER5A DNA MER1_type 7 79 -110 242 346 110 48 chr21 23867664 23868117 -21039453 + L2 LINE L2 2221 2735 -579 601 250 55 10 chr21 23868117 23868269 -21039301 + MER3 DNA MER1_type 1 166 -43 2144 113 3 23 chr21 23868269 23868579 -21038991 + AluSx SINE Alu 1 304 -8 601 250 55 10 chr21 23868579 23868626 -21038944 + MER3 DNA MER1_type 166 209 0 242 346 110 48 chr21 23868626 23868882 -21038688 + L2 LINE L2 2735 2974 -340 449 248 20 0 chr21 23868978 23869079 -21038491 + MIR SINE MIR 87 189 -73 258 277 72 0 chr21 23869193 23869276 -21038294 + L2 LINE L2 3137 3225 -47 252 111 0 0 chr21 23869789 23869834 -21037736 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 393 198 26 0 chr21 23871896 23872012 -21035558 + CT-rich Low_complexity Low_complexity 2 120 0 2075 190 104 45 chr21 23872778 23873337 -21034233 - L1MC3 LINE L1 -20 7765 7174 279 165 38 63 chr21 23873337 23873416 -21034154 - MLT1F1 LTR MaLR -456 111 35 821 116 7 14 chr21 23873418 23873565 -21034005 - L1MC3 LINE L1 -690 7095 6950 315 300 20 10 chr21 23873853 23873953 -21033617 + L2 LINE L2 3203 3303 -10 1686 156 90 0 chr21 23873961 23874282 -21033288 - MLT1A1 LTR MaLR 0 365 16 1746 176 77 57 chr21 23875394 23875889 -21031681 - MLT1D LTR MaLR 0 505 1 243 0 0 0 chr21 23876026 23876053 -21031517 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2150 116 0 0 chr21 23876055 23876340 -21031230 - AluSx SINE Alu -27 285 1 392 220 167 54 chr21 23876375 23876543 -21031027 + MIR SINE MIR 4 190 -72 345 307 42 30 chr21 23876549 23876715 -21030855 - L2 LINE L2 -544 2770 2603 3022 140 92 0 chr21 23876812 23877138 -21030432 - MER7C DNA MER2_type -2435 593 298 203 61 30 0 chr21 23877138 23877171 -21030399 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3022 140 92 0 chr21 23877171 23877387 -21030183 - MER7C DNA MER2_type -2730 298 1 285 98 0 0 chr21 23877731 23877772 -21029798 + (GA)n Simple_repeat Simple_repeat 1 41 0 2230 116 0 0 chr21 23879088 23879381 -21028189 + AluSx SINE Alu 1 293 -19 273 29 0 0 chr21 23879603 23879637 -21027933 + (TG)n Simple_repeat Simple_repeat 2 35 0 2545 119 3 13 chr21 23880371 23880749 -21026821 - THE1C LTR MaLR -1 374 1 1054 239 41 88 chr21 23880900 23881364 -21026206 - MSTB2 LTR MaLR 0 457 16 314 87 0 0 chr21 23881439 23881485 -21026085 + MADE1 DNA Mariner 2 47 -33 243 310 0 0 chr21 23881911 23881998 -21025572 + L1MC4a LINE L1 4743 4829 -1317 201 39 0 0 chr21 23882221 23882247 -21025323 + (A)n Simple_repeat Simple_repeat 1 26 0 788 241 96 100 chr21 23882386 23883065 -21024505 + L1MC4a LINE L1 5258 5933 -1875 317 216 82 82 chr21 23883113 23883263 -21024307 + L1MC4a LINE L1 6074 6226 -1582 1641 197 6 25 chr21 23883263 23883578 -21023992 + AluJo SINE Alu 1 309 -3 317 216 82 82 chr21 23883578 23883621 -21023949 + L1MC4a LINE L1 6225 6267 -1541 326 308 134 55 chr21 23883664 23884008 -21023562 + L1MC4a LINE L1 6306 6676 -1132 229 342 71 64 chr21 23884016 23884297 -21023273 - MLT1I LTR MaLR -32 377 95 599 332 4 24 chr21 23884419 23884560 -21023010 + L1MC4 LINE L1 6755 6890 -1152 2048 125 31 55 chr21 23884560 23884944 -21022626 - THE1C LTR MaLR 0 375 1 599 332 4 24 chr21 23884944 23885055 -21022515 + L1MC4 LINE L1 6890 7002 -1040 236 222 87 87 chr21 23885169 23885421 -21022149 + L1MC5 LINE L1 6972 7223 -738 2290 116 3 0 chr21 23885526 23885829 -21021741 + AluSx SINE Alu 1 304 -8 361 235 61 97 chr21 23885830 23886077 -21021493 + L1MC5 LINE L1 7259 7496 -465 323 245 144 8 chr21 23886184 23886441 -21021129 + L1MC5 LINE L1 7623 7914 -47 189 0 0 0 chr21 23886510 23886531 -21021039 + (T)n Simple_repeat Simple_repeat 1 21 0 2136 93 0 48 chr21 23886643 23886955 -21020615 - AluSx SINE Alu -15 297 1 414 159 0 0 chr21 23888259 23888328 -21019242 - AluJo SINE Alu -13 299 231 896 159 0 14 chr21 23888328 23888473 -21019097 - AluJo SINE Alu -169 143 1 224 357 19 24 chr21 23888762 23888931 -21018639 + MIR SINE MIR 34 202 -6 22 0 0 0 chr21 23889474 23889496 -21018074 + AT_rich Low_complexity Low_complexity 1 22 0 1981 110 23 17 chr21 23891079 23891379 -21016191 - AluSx SINE Alu -10 302 1 804 226 181 60 chr21 23891563 23891919 -21015651 + MER20B DNA MER1_type 1 313 -470 216 0 0 0 chr21 23891919 23891943 -21015627 + (TA)n Simple_repeat Simple_repeat 2 25 0 2286 108 16 3 chr21 23891943 23892250 -21015320 - AluSx SINE Alu -1 311 1 804 226 181 60 chr21 23892250 23892332 -21015238 + MER20B DNA MER1_type 313 384 -399 1647 188 3 35 chr21 23892332 23892646 -21014924 + AluJo SINE Alu 3 306 -6 804 226 181 60 chr21 23892646 23892901 -21014669 + MER20B DNA MER1_type 384 780 -3 1678 177 7 13 chr21 23893298 23893608 -21013962 - AluJo SINE Alu -4 308 1 1057 173 0 0 chr21 23893611 23893779 -21013791 - FRAM SINE Alu -10 166 1 22 56 0 0 chr21 23893863 23893899 -21013671 + AT_rich Low_complexity Low_complexity 1 36 0 205 190 30 110 chr21 23894368 23894468 -21013102 + L3b LINE CR1 1157 1248 -335 2861 131 0 18 chr21 23894578 23895014 -21012556 + MSTC LTR MaLR 1 428 0 523 330 132 36 chr21 23895022 23895371 -21012199 + L2 LINE L2 1527 1945 -1369 2058 120 0 0 chr21 23895371 23895693 -21011877 - AluSg SINE Alu 0 322 1 523 330 132 36 chr21 23895693 23895863 -21011707 + L2 LINE L2 1945 2097 -1217 365 225 36 45 chr21 23895907 23896018 -21011552 - MER103 DNA DNA -36 130 21 1322 186 138 75 chr21 23896612 23896919 -21010651 - MLT2D LTR ERVL 0 515 98 2042 142 3 0 chr21 23896919 23897221 -21010349 + AluSx SINE Alu 2 304 -8 1322 186 138 75 chr21 23897221 23897326 -21010244 - MLT2D LTR ERVL -417 98 1 1526 86 0 0 chr21 23897475 23897698 -21009872 - AluSg/x SINE Alu 0 307 85 1830 160 24 0 chr21 23897699 23897987 -21009583 - AluJb SINE Alu -15 297 3 3067 157 86 2 chr21 23898228 23898842 -21008728 + MER44D DNA MER2_type 4 705 0 2466 253 172 28 chr21 23898877 23900077 -21007493 - L2 LINE L2 -1 3312 1966 1992 154 6 3 chr21 23900250 23900561 -21007009 + AluJb SINE Alu 1 312 0 414 280 150 20 chr21 23900706 23900909 -21006661 - MIR SINE MIR -1 261 35 1846 145 3 20 chr21 23901361 23901665 -21005905 + AluJo SINE Alu 1 299 -13 333 200 107 100 chr21 23902465 23902605 -21004965 - MER69 DNA AcHobo -2379 147 7 2270 110 0 10 chr21 23902659 23902967 -21004603 - AluSx SINE Alu -6 306 2 801 189 0 0 chr21 23903275 23903407 -21004163 - FLAM_A SINE Alu 0 133 2 248 314 25 33 chr21 23904846 23904950 -21002620 + MIR SINE MIR 28 132 -130 2088 126 39 39 chr21 23904950 23905271 -21002299 + THE1B LTR MaLR 1 325 -39 2085 123 0 3 chr21 23905271 23905588 -21001982 + AluSx SINE Alu 1 316 0 2088 126 39 39 chr21 23905588 23905629 -21001941 + THE1B LTR MaLR 324 364 0 248 314 25 33 chr21 23905629 23905645 -21001925 + MIR SINE MIR 132 147 -115 1957 106 26 153 chr21 23906113 23906373 -21001197 - MSTA LTR MaLR 0 428 137 1845 178 0 0 chr21 23906373 23906666 -21000904 + AluSx SINE Alu 1 293 -19 1957 106 26 153 chr21 23906666 23906700 -21000870 - MSTA LTR MaLR -291 137 100 764 95 0 9 chr21 23906700 23906816 -21000754 + (GGAA)n Simple_repeat Simple_repeat 4 118 0 1957 106 26 153 chr21 23906816 23907010 -21000560 - MSTA LTR MaLR -328 100 1 2448 97 3 0 chr21 23907165 23907476 -21000094 + AluSx SINE Alu 1 312 0 22 0 0 0 chr21 23908077 23908099 -20999471 + AT_rich Low_complexity Low_complexity 1 22 0 716 137 26 0 chr21 23908243 23908360 -20999210 + L1PB4 LINE L1 6035 6154 -2 1968 98 95 11 chr21 23909130 23909415 -20998155 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr21 23909963 23909985 -20997585 + AT_rich Low_complexity Low_complexity 1 22 0 1605 133 0 17 chr21 23909988 23910228 -20997342 - AluJo SINE Alu -41 271 36 1183 179 18 40 chr21 23910575 23910798 -20996772 + MER20 DNA MER1_type 1 218 -1 689 284 129 9 chr21 23911025 23911257 -20996313 + MIR SINE MIR 3 262 0 532 317 141 36 chr21 23911570 23911928 -20995642 - L2 LINE L2 -804 2510 2191 371 19 0 38 chr21 23911928 23911981 -20995589 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 532 317 141 36 chr21 23911981 23912203 -20995367 - L2 LINE L2 -1123 2191 1869 2903 59 62 6 chr21 23912408 23912763 -20994807 - THE1C LTR MaLR 0 375 1 2412 77 0 0 chr21 23912860 23913160 -20994410 + AluY SINE Alu 1 300 -11 359 322 8 8 chr21 23913250 23913371 -20994199 - L2 LINE L2 -2 3311 3191 3832 156 42 20 chr21 23913590 23914339 -20993231 - LTR1B LTR ERV1 0 785 1 837 132 88 19 chr21 23915533 23915692 -20991878 + L1MB2 LINE L1 6001 6170 -1 1463 177 32 14 chr21 23915748 23916057 -20991513 - AluJb SINE Alu 0 314 1 271 258 0 0 chr21 23916312 23916374 -20991196 + MIR SINE MIR 174 235 -27 1402 149 106 21 chr21 23916426 23916708 -20990862 + AluJo SINE Alu 1 306 -6 901 177 0 0 chr21 23917164 23917311 -20990259 - L1MB5 LINE L1 -8 6166 6020 481 315 118 34 chr21 23918347 23918585 -20988985 - MIR SINE MIR 0 262 5 668 205 0 8 chr21 23918742 23918859 -20988711 - MLT1C LTR MaLR 0 467 352 813 296 47 42 chr21 23918859 23919241 -20988329 + L2 LINE L2 2926 3309 -4 321 26 0 0 chr21 23919403 23919441 -20988129 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr21 23920092 23920122 -20987448 + AT_rich Low_complexity Low_complexity 1 30 0 466 240 128 36 chr21 23920680 23920876 -20986694 - MIR SINE MIR 0 262 49 315 111 28 28 chr21 23921413 23921485 -20986085 + CT-rich Low_complexity Low_complexity 1 72 0 1482 164 19 65 chr21 23921496 23921806 -20985764 - AluJo SINE Alu -16 296 1 362 266 131 10 chr21 23922059 23922258 -20985312 + L1MC5 LINE L1 7705 7927 -34 649 257 14 7 chr21 23922531 23922679 -20984891 - AluJo SINE Alu -161 151 3 1936 109 84 0 chr21 23922907 23923182 -20984388 + AluSx SINE Alu 1 298 -14 30 27 0 0 chr21 23923750 23923787 -20983783 + AT_rich Low_complexity Low_complexity 1 37 0 188 311 108 0 chr21 23924042 23924116 -20983454 - MIR SINE MIR -108 154 73 2331 85 0 13 chr21 23924411 23924716 -20982854 - AluSg SINE Alu -9 301 1 308 333 92 8 chr21 23925573 23925693 -20981877 - MIR SINE MIR -122 140 11 1508 170 20 39 chr21 23925712 23926018 -20981552 + AluJo SINE Alu 6 305 -7 10405 55 10 61 chr21 23926135 23927594 -20979976 - SVA Other Other 0 1386 3 2011 220 23 63 chr21 23927733 23928033 -20979537 - MLT1E3 LTR MaLR -80 544 275 1299 218 103 4 chr21 23928033 23928304 -20979266 - AluJo SINE Alu -4 298 1 2011 220 23 63 chr21 23928304 23928561 -20979009 - MLT1E3 LTR MaLR -349 275 9 1844 157 3 23 chr21 23928779 23929079 -20978491 + AluJb SINE Alu 1 294 -18 225 0 0 0 chr21 23929087 23929112 -20978458 + (CA)n Simple_repeat Simple_repeat 1 25 0 300 152 0 0 chr21 23929112 23929178 -20978392 + CT-rich Low_complexity Low_complexity 1 66 0 1265 296 36 27 chr21 23929260 23929702 -20977868 - MLT1J1 LTR MaLR 0 446 1 2734 29 0 3 chr21 23930600 23930912 -20976658 + AluY SINE Alu 1 311 0 23 33 0 0 chr21 23931502 23931532 -20976038 + AT_rich Low_complexity Low_complexity 1 30 0 2071 122 3 0 chr21 23931533 23931819 -20975751 - AluSx SINE Alu -25 287 1 497 240 0 7 chr21 23932507 23932657 -20974913 + CT-rich Low_complexity Low_complexity 1 149 0 2258 105 3 0 chr21 23934006 23934311 -20973259 - AluSx SINE Alu -6 306 1 23 0 0 0 chr21 23935683 23935706 -20971864 + AT_rich Low_complexity Low_complexity 1 23 0 470 347 62 18 chr21 23935844 23936118 -20971452 + L3 LINE CR1 463 748 -829 213 269 0 30 chr21 23936275 23936342 -20971228 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1616 186 3 27 chr21 23936400 23936696 -20970874 - AluJo SINE Alu -22 290 2 1923 150 0 11 chr21 23937328 23937641 -20969929 - AluSx SINE Alu 0 310 1 2436 70 3 0 chr21 23937896 23938195 -20969375 - AluY SINE Alu -9 302 3 2226 125 0 0 chr21 23938359 23938664 -20968906 + AluSx SINE Alu 1 305 -7 21 57 0 0 chr21 23938907 23938942 -20968628 + AT_rich Low_complexity Low_complexity 1 35 0 1762 176 3 10 chr21 23939011 23939307 -20968263 - AluJb SINE Alu -18 294 1 1747 175 7 0 chr21 23939446 23939743 -20967827 + AluJo SINE Alu 1 299 -13 1595 173 152 6 chr21 23940085 23940292 -20967278 + MER58D DNA MER1_type 1 176 -2244 239 54 27 0 chr21 23940292 23940329 -20967241 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1595 173 152 6 chr21 23940329 23940457 -20967113 + MER58D DNA MER1_type 176 385 -1 26 0 0 0 chr21 23940489 23940515 -20967055 + AT_rich Low_complexity Low_complexity 1 26 0 2639 145 39 7 chr21 23940757 23941172 -20966398 - MSTA LTR MaLR 0 428 1 2011 261 73 37 chr21 23941403 23942451 -20965119 - L2 LINE L2 -17 3296 2219 376 254 44 0 chr21 23942850 23942964 -20964606 - L2 LINE L2 -518 2796 2678 25 31 0 0 chr21 23943178 23943210 -20964360 + AT_rich Low_complexity Low_complexity 1 32 0 217 200 350 0 chr21 23943833 23943913 -20963657 - MIR SINE MIR -109 153 46 2138 169 34 6 chr21 23944021 23944376 -20963194 - MLT1A1 LTR MaLR 0 365 1 706 183 15 0 chr21 23945118 23945249 -20962321 - MER20 DNA MER1_type 0 219 87 2102 104 25 0 chr21 23945384 23945686 -20961884 + AluSg SINE Alu 1 309 0 2184 111 6 35 chr21 23947138 23947454 -20960116 - AluSx SINE Alu -4 308 2 1104 191 56 14 chr21 23947700 23947915 -20959655 - MER58A DNA MER1_type 0 224 1 288 273 109 64 chr21 23948924 23949144 -20958426 - MIR SINE MIR 0 262 33 1319 191 15 22 chr21 23949212 23949485 -20958085 - AluJb SINE Alu -28 284 14 24 32 0 0 chr21 23949491 23949522 -20958048 + AT_rich Low_complexity Low_complexity 1 31 0 2249 87 21 0 chr21 23949525 23949812 -20957758 - AluSc SINE Alu -16 293 1 21 0 0 0 chr21 23951189 23951210 -20956360 + AT_rich Low_complexity Low_complexity 1 21 0 2087 113 24 0 chr21 23951615 23951907 -20955663 - AluSx SINE Alu -13 299 1 1918 160 16 3 chr21 23952151 23952458 -20955112 + AluJb SINE Alu 1 311 -1 1435 125 12 113 chr21 23952809 23953138 -20954432 + AluY SINE Alu 1 296 -15 833 120 114 54 chr21 23953630 23953797 -20953773 - MLT1B LTR MaLR -213 177 1 1724 97 0 0 chr21 23954720 23954936 -20952634 + AluSx SINE Alu 3 218 -94 22 0 0 0 chr21 23955122 23955144 -20952426 + AT_rich Low_complexity Low_complexity 1 22 0 553 263 116 13 chr21 23955977 23956201 -20951369 - MIR SINE MIR -10 252 6 2326 93 0 3 chr21 23956597 23956897 -20950673 - AluSc SINE Alu -10 299 1 367 309 159 20 chr21 23957112 23957313 -20950257 + MIR SINE MIR 17 245 -17 232 261 0 0 chr21 23957280 23957326 -20950244 + L2 LINE L2 3258 3303 -10 * 191 341 61 24 chr21 23957527 23957609 -20949961 - L2 LINE L2 -209 3104 3020 886 224 29 38 chr21 23958135 23958345 -20949225 + MER3 DNA MER1_type 2 209 0 315 339 138 0 chr21 23958450 23958559 -20949011 + L2 LINE L2 3137 3260 -12 658 213 72 52 chr21 23958576 23958777 -20948793 - MIR SINE MIR -48 214 14 279 246 175 24 chr21 23958927 23959053 -20948517 + MIR SINE MIR 41 185 -77 2511 93 0 0 chr21 23961610 23961923 -20945647 + AluSp SINE Alu 1 313 0 2008 138 14 0 chr21 23962121 23962418 -20945152 + AluSx SINE Alu 1 301 -11 1057 186 75 44 chr21 23962565 23962791 -20944779 - AluJb SINE Alu -19 293 61 195 257 114 0 chr21 23962891 23962961 -20944609 + MER5C DNA MER1_type 26 103 -221 882 114 0 0 chr21 23962961 23963084 -20944486 + FLAM_C SINE Alu 1 123 -10 352 163 156 64 chr21 23963084 23963225 -20944345 + MER5C DNA MER1_type 170 323 -1 765 204 42 16 chr21 23963294 23963485 -20944085 + MER20 DNA MER1_type 24 219 0 1984 162 3 0 chr21 23963523 23963831 -20943739 + AluJb SINE Alu 1 309 -3 2279 63 9 66 chr21 23963842 23964174 -20943396 + AluSp SINE Alu 1 313 0 193 252 9 135 chr21 23964319 23964406 -20943164 - MIR SINE MIR -86 176 104 2307 62 10 3 chr21 23964406 23964694 -20942876 + AluY SINE Alu 1 290 -21 193 252 9 135 chr21 23964694 23964717 -20942853 - MIR SINE MIR -158 104 80 311 329 90 18 chr21 23964823 23964990 -20942580 - MIR SINE MIR -8 254 76 211 270 22 11 chr21 23966897 23966986 -20940584 + (CGGGG)n Simple_repeat Simple_repeat 5 94 0 241 318 0 54 chr21 23967857 23968005 -20939565 - L1MC4 LINE L1 -15 8027 7888 241 314 86 0 chr21 23969121 23969261 -20938309 - L1ME LINE L1 -410 5752 5601 296 280 110 5 chr21 23969630 23969830 -20937740 - L1ME LINE L1 -964 5182 4962 228 327 112 0 chr21 23969835 23969942 -20937628 - L2 LINE L2 0 3313 3195 1089 182 57 18 chr21 23970458 23970742 -20936828 - MLT1D LTR MaLR -6 499 219 1580 176 20 30 chr21 23970775 23971076 -20936494 - AluJo SINE Alu -14 298 1 563 191 0 56 chr21 23971084 23971210 -20936360 - L2 LINE L2 -608 2706 2588 1903 145 10 20 chr21 23972288 23972592 -20934978 - AluJb SINE Alu -11 301 1 219 304 148 17 chr21 23973153 23973268 -20934302 - L2 LINE L2 -4 3309 3180 1285 241 109 47 chr21 23973741 23973790 -20933780 - MLT1F LTR MaLR -19 523 478 1732 158 3 63 chr21 23973790 23974106 -20933464 + AluJo SINE Alu 1 297 -15 1285 241 109 47 chr21 23974106 23974542 -20933028 - MLT1F LTR MaLR -64 478 8 249 179 89 18 chr21 23974556 23974612 -20932958 + MER58 DNA MER1_type 132 2396 -24 2282 89 24 0 chr21 23974929 23975222 -20932348 + AluSc SINE Alu 1 300 -9 32 20 0 20 chr21 23975343 23975369 -20932201 + AT_rich Low_complexity Low_complexity 1 27 -22 675 175 17 17 chr21 23975369 23975489 -20932081 + FLAM_A SINE Alu 1 120 -13 32 20 0 20 chr21 23975489 23975512 -20932058 + AT_rich Low_complexity Low_complexity 27 49 0 203 295 26 13 chr21 23976057 23976135 -20931435 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 1989 148 0 10 chr21 23977168 23977473 -20930097 - AluSx SINE Alu -10 302 1 349 303 128 32 chr21 23977867 23978085 -20929485 + L1ME LINE L1 5539 5777 -344 488 273 58 13 chr21 23978172 23978326 -20929244 - MIR SINE MIR -70 192 32 273 230 92 35 chr21 23978396 23978483 -20929087 + MIR3 SINE MIR 100 191 -17 1822 131 40 0 chr21 23979064 23979364 -20928206 - AluSx SINE Alu 0 311 1 1924 152 3 0 chr21 23980709 23980992 -20926578 + AluSq SINE Alu 2 285 -28 2997 140 100 2 chr21 23981028 23981508 -20926062 - MER1A DNA MER1_type 0 527 1 23 78 0 0 chr21 23982388 23982439 -20925131 + AT_rich Low_complexity Low_complexity 1 51 0 36 0 0 0 chr21 23982511 23982547 -20925023 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr21 23982828 23982862 -20924708 + AT_rich Low_complexity Low_complexity 1 34 0 614 116 45 0 chr21 23982929 23983041 -20924529 - L1MC4 LINE L1 0 8042 7926 213 327 18 0 chr21 23984236 23984291 -20923279 - L2 LINE L2 -10 3303 3248 219 349 123 43 chr21 23984462 23984877 -20922693 - L2 LINE L2 -1054 2260 1813 21 0 0 0 chr21 23984978 23984999 -20922571 + AT_rich Low_complexity Low_complexity 1 21 0 837 194 169 4 chr21 23985191 23985469 -20922101 + MER33 DNA MER1_type 1 324 0 229 259 204 50 chr21 23985485 23985925 -20921645 - HAL1 LINE L1 -1188 1319 812 2175 126 3 0 chr21 23985928 23986222 -20921348 + AluSx SINE Alu 1 295 -17 1485 192 52 0 chr21 23986325 23986612 -20920958 + AluJo SINE Alu 1 302 -10 255 297 72 27 chr21 23987193 23987304 -20920266 - HAL1 LINE L1 -2391 116 1 24 0 0 0 chr21 23987350 23987374 -20920196 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 23988053 23988074 -20919496 + AT_rich Low_complexity Low_complexity 1 21 0 212 321 123 9 chr21 23988544 23988650 -20918920 - L2 LINE L2 -36 3236 3119 207 0 0 0 chr21 23989008 23989031 -20918539 + (T)n Simple_repeat Simple_repeat 1 23 0 554 254 212 18 chr21 23989469 23989686 -20917884 - MIR SINE MIR 0 262 4 1475 161 20 16 chr21 23989994 23990248 -20917322 + AluSx SINE Alu 49 303 -9 489 165 0 0 chr21 23990582 23990661 -20916909 + AluS SINE Alu 1 79 -233 382 324 61 7 chr21 23992396 23992544 -20915026 - MIR SINE MIR -74 188 33 25 0 0 0 chr21 23993598 23993623 -20913947 + AT_rich Low_complexity Low_complexity 1 25 0 547 236 152 33 chr21 23996550 23996885 -20910685 - HAL1 LINE L1 -169 2338 1964 539 301 50 40 chr21 23996975 23997477 -20910093 + L1ME3A LINE L1 4528 5034 -1112 1426 227 113 88 chr21 23997623 23998515 -20909055 + L1ME3A LINE L1 5236 6170 0 22 35 0 0 chr21 23999584 23999613 -20907957 + AT_rich Low_complexity Low_complexity 1 29 0 476 260 122 25 chr21 23999649 23999845 -20907725 - MIR SINE MIR -29 233 19 23 0 0 0 chr21 24000895 24000918 -20906652 + AT_rich Low_complexity Low_complexity 1 23 0 350 163 174 0 chr21 24004295 24004387 -20903183 - MER5C DNA MER1_type 0 324 217 922 123 68 0 chr21 24004389 24004552 -20903018 + L1MB2 LINE L1 5991 6164 -7 2590 211 138 57 chr21 24004602 24005220 -20902350 + L1ME1 LINE L1 3856 4422 -1724 1966 126 10 20 chr21 24005220 24005522 -20902048 - AluSx SINE Alu -13 299 1 2590 211 138 57 chr21 24005522 24006057 -20901513 + L1ME1 LINE L1 4422 4912 -1234 1454 153 0 136 chr21 24006057 24006403 -20901167 + AluJo SINE Alu 1 299 -13 2590 211 138 57 chr21 24006403 24006477 -20901093 + L1ME1 LINE L1 4912 4979 -1167 1777 203 0 9 chr21 24006477 24006792 -20900778 + AluJo SINE Alu 1 312 0 2590 211 138 57 chr21 24006792 24006849 -20900721 + L1ME1 LINE L1 4979 5247 -899 1762 237 150 31 chr21 24006952 24007332 -20900238 + L1ME1 LINE L1 5239 5572 -594 2141 126 0 0 chr21 24007332 24007626 -20899944 - AluSq SINE Alu -19 294 1 1762 237 150 31 chr21 24007626 24008062 -20899508 + L1ME1 LINE L1 5572 6160 -6 538 181 176 33 chr21 24008065 24008247 -20899323 - MER5C DNA MER1_type -92 232 25 2245 113 0 7 chr21 24008331 24008633 -20898937 - AluSx SINE Alu -12 300 1 1898 122 15 0 chr21 24009080 24009343 -20898227 - AluSx SINE Alu -15 297 31 4372 119 29 26 chr21 24009344 24010864 -20896706 + pTR5 LTR ERV1 1 2438 0 464 106 0 0 chr21 24010867 24010933 -20896637 - AluS SINE Alu -246 67 2 219 365 113 0 chr21 24011070 24011185 -20896385 + MIR3 SINE MIR 4 131 -77 412 283 169 0 chr21 24011431 24011597 -20895973 - MIR SINE MIR -19 243 50 330 248 40 16 chr21 24011774 24011899 -20895671 + L1MC5 LINE L1 7107 7234 -727 2328 60 20 7 chr21 24011995 24012295 -20895275 + AluY SINE Alu 1 304 -7 994 210 122 100 chr21 24012343 24012952 -20894618 + L1MC5 LINE L1 7292 7913 -48 953 184 31 15 chr21 24013225 24013421 -20894149 - AluJo SINE Alu -113 199 1 233 259 37 37 chr21 24013837 24013918 -20893652 + L2 LINE L2 3138 3218 -54 2044 116 14 0 chr21 24013922 24014198 -20893372 + AluSx SINE Alu 1 280 -32 22 0 0 0 chr21 24014517 24014539 -20893031 + AT_rich Low_complexity Low_complexity 1 22 0 2234 108 3 25 chr21 24015676 24015991 -20891579 - AluSp SINE Alu -5 308 1 1815 148 14 3 chr21 24016362 24016653 -20890917 - AluSx SINE Alu -18 294 1 1837 247 91 37 chr21 24016723 24017530 -20890040 - L1M4 LINE L1 -2271 3875 3026 776 244 21 0 chr21 24017516 24017709 -20889861 + L1M4 LINE L1 2680 2876 -3270 * 538 242 22 11 chr21 24017718 24017900 -20889670 - L1M4 LINE L1 -3113 3033 2850 2077 115 14 3 chr21 24018119 24018407 -20889163 + AluSq SINE Alu 1 291 -22 2084 152 3 44 chr21 24018782 24018983 -20888587 - MLT1A1 LTR MaLR -19 346 165 2388 76 7 0 chr21 24018983 24019285 -20888285 - AluSp SINE Alu -9 304 1 2084 152 3 44 chr21 24019285 24019444 -20888126 - MLT1A1 LTR MaLR -200 165 1 923 211 87 19 chr21 24019872 24020137 -20887433 + L1MEc LINE L1 318 600 -5796 2086 94 19 36 chr21 24020199 24020506 -20887064 + AluSx SINE Alu 1 302 -10 533 134 0 31 chr21 24020576 24020673 -20886897 + L1MA4 LINE L1 6196 6289 -11 620 88 0 0 chr21 24020821 24020901 -20886669 + MADE1 DNA Mariner 1 80 0 5256 109 15 12 chr21 24022867 24023609 -20883961 - L1PA15 LINE L1 -4 6161 5418 1835 157 4 0 chr21 24023620 24023921 -20883649 - AluJb SINE Alu 0 302 1 1277 210 57 82 chr21 24024526 24024776 -20882794 - MLT1C LTR MaLR 0 467 233 2130 124 10 3 chr21 24024776 24025082 -20882488 - AluSx SINE Alu -4 308 1 1277 210 57 82 chr21 24025082 24025307 -20882263 - MLT1C LTR MaLR -234 233 4 1669 178 7 11 chr21 24025402 24025689 -20881881 + AluJo SINE Alu 1 286 -26 2221 84 37 0 chr21 24026182 24026480 -20881090 - AluSc SINE Alu 0 309 1 415 219 125 8 chr21 24027368 24027496 -20880074 - MER96B DNA MER1_type? -233 184 42 656 136 0 27 chr21 24027621 24027731 -20879839 + FLAM_C SINE Alu 35 141 -2 591 210 122 18 chr21 24027735 24027964 -20879606 + L1M4 LINE L1 2946 3198 -2948 * 745 197 71 10 chr21 24027946 24028144 -20879426 + L1MC3 LINE L1 7576 7785 0 199 184 53 0 chr21 24028744 24028782 -20878788 + MIR SINE MIR 119 158 -104 1996 111 18 0 chr21 24028822 24029134 -20878436 + AluSx SINE Alu 1 317 0 209 257 42 125 chr21 24029402 24029496 -20878074 + MIR SINE MIR 20 100 -108 1688 177 0 26 chr21 24029496 24029807 -20877763 - AluJb SINE Alu -9 303 1 209 257 42 125 chr21 24029807 24029856 -20877714 + MIR SINE MIR 100 151 -57 275 163 0 0 chr21 24030355 24030398 -20877172 - Alu SINE Alu -260 43 1 2097 111 10 7 chr21 24030947 24031235 -20876335 - AluSx SINE Alu -23 289 1 2308 99 3 0 chr21 24031747 24032049 -20875521 + AluSx SINE Alu 1 303 -9 2181 117 3 0 chr21 24032130 24032437 -20875133 - AluSx SINE Alu -4 308 1 883 174 0 52 chr21 24033524 24033696 -20873874 + FRAM SINE Alu 1 163 -13 2296 113 0 3 chr21 24033987 24034297 -20873273 + AluSg SINE Alu 1 309 -1 319 278 73 28 chr21 24034493 24034712 -20872858 + L1M4c LINE L1 2271 2499 -3883 257 315 43 35 chr21 24034837 24035091 -20872479 + L1M4c LINE L1 2516 2771 -3611 1693 168 7 26 chr21 24035373 24035682 -20871888 - AluJo SINE Alu -8 304 2 228 248 80 22 chr21 24035734 24035871 -20871699 + L1M4c LINE L1 3134 3278 -3104 1195 185 30 96 chr21 24035909 24036211 -20871359 + AluJo SINE Alu 1 282 -30 258 56 0 0 chr21 24036798 24036834 -20870736 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 932 195 0 0 chr21 24036838 24036987 -20870583 - FRAM SINE Alu -30 146 1 25 0 0 0 chr21 24036987 24037012 -20870558 + AT_rich Low_complexity Low_complexity 1 25 0 846 170 0 21 chr21 24037012 24037153 -20870417 - FLAM_C SINE Alu -4 139 2 2674 208 41 22 chr21 24037700 24038233 -20869337 + MLT2B3 LTR ERVL 12 554 0 264 332 24 115 chr21 24038235 24038488 -20869082 + L2 LINE L2 397 626 -2688 2088 132 7 0 chr21 24038593 24038896 -20868674 + AluSx SINE Alu 1 305 -7 275 218 42 63 chr21 24038896 24039038 -20868532 + L1MC5 LINE L1 7636 7774 -187 348 174 76 22 chr21 24039039 24039131 -20868439 + L1MC5 LINE L1 7809 7905 -56 919 314 107 55 chr21 24039186 24039381 -20868189 + L2 LINE L2 758 941 -2373 2002 115 27 10 chr21 24039381 24039677 -20867893 + AluSx SINE Alu 1 301 -11 919 314 107 55 chr21 24039677 24040344 -20867226 + L2 LINE L2 941 1665 -1649 411 259 204 14 chr21 24040363 24040510 -20867060 - MER5A DNA MER1_type -6 183 9 2234 187 33 9 chr21 24040837 24041246 -20866324 + MSTB LTR MaLR 3 428 0 353 284 147 10 chr21 24041295 24041446 -20866124 + L3 LINE CR1 1344 1532 -45 4279 100 9 0 chr21 24041446 24041994 -20865576 - MER41A LTR ERV1 -1 553 1 353 284 147 10 chr21 24041994 24042046 -20865524 + L3 LINE CR1 1532 1575 -2 21 0 0 0 chr21 24042170 24042191 -20865379 + AT_rich Low_complexity Low_complexity 1 21 0 3081 222 104 29 chr21 24042263 24042818 -20864752 + L1ME1 LINE L1 4270 4782 -1364 2174 104 3 3 chr21 24042818 24043117 -20864453 - AluSg SINE Alu -11 299 1 3081 222 104 29 chr21 24043117 24043588 -20863982 + L1ME1 LINE L1 4782 5373 -773 601 181 4 6 chr21 24043589 24043832 -20863738 + AluJ SINE Alu 2 293 -9 2442 50 0 0 chr21 24043834 24044115 -20863455 + AluY SINE Alu 1 281 -30 776 204 18 46 chr21 24044130 24044333 -20863237 + L1ME1 LINE L1 5362 5559 -605 4150 173 46 55 chr21 24044340 24044920 -20862650 + L1MB2 LINE L1 4746 5330 -841 2108 135 3 0 chr21 24044920 24045217 -20862353 - AluSq SINE Alu -15 298 1 4150 173 46 55 chr21 24045217 24045702 -20861868 + L1MB2 LINE L1 5330 5813 -358 2437 100 0 0 chr21 24045702 24046013 -20861557 - AluSx SINE Alu -1 311 1 4150 173 46 55 chr21 24046013 24046310 -20861260 + L1MB2 LINE L1 5813 6111 -60 1246 179 14 0 chr21 24046310 24046517 -20861053 + MER2 DNA MER2_type 1 210 -135 26 0 0 0 chr21 24046649 24046675 -20860895 + AT_rich Low_complexity Low_complexity 1 26 0 2018 194 84 40 chr21 24046682 24046727 -20860843 + L1ME1 LINE L1 5551 5593 -573 1721 112 120 11 chr21 24046727 24047003 -20860567 - AluSg1 SINE Alu -3 306 1 2018 194 84 40 chr21 24047003 24047457 -20860113 + L1ME1 LINE L1 5593 6072 -94 617 250 65 38 chr21 24048430 24048614 -20858956 + MIR SINE MIR 64 252 -10 385 238 66 7 chr21 24048631 24048782 -20858788 - L1M3 LINE L1 -725 5455 5296 2198 129 0 0 chr21 24050267 24050570 -20857000 - AluSx SINE Alu -5 307 5 1151 202 112 97 chr21 24050611 24050783 -20856787 + MLT1C LTR MaLR 6 174 -293 405 0 0 0 chr21 24050783 24050828 -20856742 + (CA)n Simple_repeat Simple_repeat 2 46 0 1151 202 112 97 chr21 24050828 24050926 -20856644 + MLT1C LTR MaLR 174 269 -198 2093 118 3 13 chr21 24050926 24051230 -20856340 - AluSx SINE Alu -11 301 1 1151 202 112 97 chr21 24051230 24051345 -20856225 + MLT1C LTR MaLR 269 403 -64 2321 107 0 0 chr21 24051345 24051654 -20855916 - AluSx SINE Alu -3 309 1 1151 202 112 97 chr21 24051654 24051721 -20855849 + MLT1C LTR MaLR 403 467 0 2217 118 0 7 chr21 24052639 24052935 -20854635 - AluSx SINE Alu -16 296 3 262 271 0 0 chr21 24052946 24053005 -20854565 + MIR SINE MIR 113 171 -91 1569 91 72 49 chr21 24053040 24053216 -20854354 + L1MA2 LINE L1 6035 6220 -84 2349 88 0 0 chr21 24053216 24053522 -20854048 - AluY SINE Alu -5 306 1 1569 91 72 49 chr21 24053522 24053609 -20853961 + L1MA2 LINE L1 6220 6304 0 333 322 0 11 chr21 24053690 24053780 -20853790 + L2 LINE L2 3170 3258 -14 2130 118 0 7 chr21 24054662 24054959 -20852611 + AluSx SINE Alu 1 295 -17 223 227 61 30 chr21 24055250 24055316 -20852254 + L2 LINE L2 3241 3308 -5 2738 42 0 0 chr21 24055737 24056047 -20851523 - AluY SINE Alu -1 310 1 1109 145 47 5 chr21 24056909 24057102 -20850468 - L1MC3 LINE L1 -2 7783 7599 972 107 0 18 chr21 24057102 24057271 -20850299 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 1667 188 0 7 chr21 24057271 24057553 -20850017 - AluJb SINE Alu -32 280 1 1109 145 47 5 chr21 24057553 24057572 -20849998 - L1MC3 LINE L1 -185 7600 6114 23 0 0 0 chr21 24057577 24057600 -20849970 + AT_rich Low_complexity Low_complexity 1 23 0 313 292 31 108 chr21 24057689 24057884 -20849686 - MER5A DNA MER1_type -3 186 7 2622 39 0 3 chr21 24059512 24059824 -20847746 - AluY SINE Alu 0 311 1 240 200 0 0 chr21 24059836 24059881 -20847689 - MLT1D LTR MaLR -431 74 30 1009 202 88 39 chr21 24060435 24060742 -20846828 - MER33 DNA MER1_type 0 324 3 235 172 16 125 chr21 24060928 24060992 -20846578 + LTR67 LTR ERVL 97 153 -404 * 328 243 24 0 chr21 24060954 24061042 -20846528 + MLT1J LTR MaLR 111 263 -333 981 200 239 0 chr21 24061199 24061296 -20846274 + AluJo SINE Alu 3 76 -226 243 0 0 0 chr21 24061296 24061323 -20846247 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 981 200 239 0 chr21 24061323 24061455 -20846115 + AluJo SINE Alu 76 287 -15 1788 129 38 0 chr21 24061465 24061729 -20845841 + AluSx SINE Alu 3 276 -36 228 67 0 0 chr21 24061737 24061767 -20845803 + (TAA)n Simple_repeat Simple_repeat 2 31 0 330 260 81 16 chr21 24061864 24061987 -20845583 + LTR50 LTR ERVL 73 203 -592 290 160 20 0 chr21 24062011 24062061 -20845509 + LTR33A LTR ERVL 473 523 0 629 314 129 38 chr21 24062062 24062107 -20845463 + L2 LINE L2 2658 2697 -616 2239 120 13 0 chr21 24062107 24062415 -20845155 + AluSx SINE Alu 1 312 0 629 314 129 38 chr21 24062415 24062550 -20845020 + L2 LINE L2 2697 2818 -495 3757 165 17 17 chr21 24062550 24063185 -20844385 + MER41B LTR ERV1 1 635 0 629 314 129 38 chr21 24063185 24063439 -20844131 + L2 LINE L2 2818 3161 -152 4269 115 45 68 chr21 24063439 24064146 -20843424 + LTR8 LTR ERV1 1 691 0 629 314 129 38 chr21 24064146 24064273 -20843297 + L2 LINE L2 3161 3275 -38 232 316 152 39 chr21 24064265 24064496 -20843074 - L2 LINE L2 -905 2409 2153 * 2161 201 154 125 chr21 24064547 24065316 -20842254 + LTR28 LTR ERV1 1 983 -37 517 296 12 10 chr21 24065312 24065457 -20842113 + LTR28 LTR ERV1 675 1020 0 * 4853 133 93 19 chr21 24065626 24066467 -20841103 + MER4D LTR ERV1 1 903 0 2535 77 0 0 chr21 24067014 24067324 -20840246 + AluY SINE Alu 1 310 -1 2108 193 34 34 chr21 24067955 24068422 -20839148 - MLT1C LTR MaLR 0 467 1 1533 201 134 43 chr21 24069603 24070066 -20837504 - MLT1D LTR MaLR 0 505 1 2049 162 162 15 chr21 24070241 24070410 -20837160 - LOR1b LTR ERV1 0 461 318 2144 120 143 49 chr21 24070410 24070449 -20837121 - MSTA LTR MaLR 0 428 394 1873 157 3 14 chr21 24070449 24070759 -20836811 + AluSx SINE Alu 1 307 0 2144 120 143 49 chr21 24070759 24071109 -20836461 - MSTA LTR MaLR -34 394 1 2049 162 162 15 chr21 24071109 24071341 -20836229 - LOR1b LTR ERV1 -143 318 1 1240 173 4 18 chr21 24071502 24071727 -20835843 - MLT1A1 LTR MaLR -143 222 1 642 208 39 0 chr21 24071732 24071862 -20835708 + L1MC2 LINE L1 6197 6331 -13 400 237 50 12 chr21 24072018 24072159 -20835411 - MER69A DNA AcHobo -27 150 4 192 311 76 42 chr21 24072451 24072570 -20835000 - MIR SINE MIR -65 143 21 836 244 6 0 chr21 24073584 24073744 -20833826 - AluJb SINE Alu -15 297 137 299 286 107 67 chr21 24075183 24075407 -20832163 + MIR SINE MIR 2 234 -28 405 187 112 112 chr21 24075605 24075711 -20831859 - L2 LINE L2 0 3313 3205 2034 109 51 10 chr21 24075711 24076005 -20831565 - AluSq SINE Alu -7 306 1 405 187 112 112 chr21 24076005 24076032 -20831538 - L2 LINE L2 -107 3206 3180 264 279 12 35 chr21 24076458 24076544 -20831026 + L2 LINE L2 3139 3222 -50 2142 133 55 33 chr21 24078613 24078980 -20828590 + THE1C LTR MaLR 1 375 0 10529 124 20 42 chr21 24078982 24080596 -20826974 + THE1C-int LTR MaLR 3 1580 0 1955 144 69 30 chr21 24080596 24080957 -20826613 + THE1C LTR MaLR 1 375 0 267 325 75 8 chr21 24080958 24081078 -20826492 + L2 LINE L2 3145 3272 0 2120 219 70 8 chr21 24082448 24082932 -20824638 + LTR40a LTR ERVL 1 514 -5 1670 215 65 0 chr21 24083439 24083811 -20823759 + L1MA4 LINE L1 5901 6296 -4 377 348 98 22 chr21 24083873 24084097 -20823473 + L2 LINE L2 2602 2842 -472 608 298 27 53 chr21 24084122 24084328 -20823242 + MIR SINE MIR 4 203 -59 2294 162 18 30 chr21 24084328 24084723 -20822847 - MSTD LTR MaLR -4 392 3 608 298 27 53 chr21 24084723 24084778 -20822792 + MIR SINE MIR 203 258 -4 229 352 11 11 chr21 24084878 24084969 -20822601 + MIR SINE MIR 2 92 -170 777 247 51 21 chr21 24085042 24085277 -20822293 + LTR50 LTR ERVL 1 242 -553 854 181 67 43 chr21 24085305 24085515 -20822055 - MER96B DNA MER1_type? -1 416 202 1550 202 7 3 chr21 24085740 24086037 -20821533 + AluJb SINE Alu 5 302 -10 1936 154 6 16 chr21 24086081 24086393 -20821177 - AluSx SINE Alu -3 309 1 2232 95 3 3 chr21 24086456 24086750 -20820820 + AluY SINE Alu 1 294 -17 294 29 0 0 chr21 24086761 24086796 -20820774 + (CA)n Simple_repeat Simple_repeat 2 36 0 1671 203 3 0 chr21 24086989 24087299 -20820271 + HERVH LTR ERV1 6804 7114 -599 767 161 36 52 chr21 24087286 24087479 -20820091 + HERVH LTR ERV1 7518 7707 -6 * 489 238 109 26 chr21 24087681 24087874 -20819696 + LTR7 LTR ERV1 242 450 0 336 260 100 0 chr21 24089604 24089704 -20817866 - L2 LINE L2 -2 3270 3161 1208 172 69 0 chr21 24089922 24090126 -20817444 + MER20 DNA MER1_type 2 219 0 874 204 73 34 chr21 24091695 24091901 -20815669 - AluJb SINE Alu -90 222 9 531 216 31 37 chr21 24092368 24092530 -20815040 + MLT1A1 LTR MaLR 1 161 -204 523 196 107 9 chr21 24092948 24093060 -20814510 + L2 LINE L2 3190 3312 -1 416 131 12 60 chr21 24093169 24093253 -20814317 - L1PA3 LINE L1 0 6155 6076 1657 159 27 70 chr21 24093299 24093671 -20813899 - MLT1A1 LTR MaLR 0 365 10 3908 150 80 17 chr21 24094702 24095363 -20812207 - MER44D DNA MER2_type 0 705 3 2104 136 0 0 chr21 24095533 24095827 -20811743 - AluSx SINE Alu -17 295 2 570 169 15 66 chr21 24095827 24095963 -20811607 - L1MD3 LINE L1 -18 7977 7849 459 0 0 0 chr21 24096665 24096716 -20810854 + (TG)n Simple_repeat Simple_repeat 2 52 0 2352 56 0 80 chr21 24097701 24098025 -20809545 - AluSp SINE Alu -15 298 1 614 88 0 0 chr21 24098143 24098223 -20809347 + MADE1 DNA Mariner 1 80 0 3355 116 0 16 chr21 24099640 24100125 -20807445 - MER1A DNA MER1_type 0 529 53 1976 138 17 3 chr21 24100197 24100487 -20807083 - AluJb SINE Alu -18 294 1 2192 76 33 30 chr21 24100496 24100800 -20806770 - AluY SINE Alu -6 305 1 3213 146 86 75 chr21 24101347 24102030 -20805540 - LTR8 LTR ERV1 0 691 1 695 273 51 84 chr21 24102135 24102469 -20805101 - L2 LINE L2 0 3313 2991 253 204 0 0 chr21 24102497 24102546 -20805024 - MLT1G1 LTR MaLR -92 503 455 1499 24 0 0 chr21 24102558 24102725 -20804845 + AluY SINE Alu 143 309 -2 654 208 208 31 chr21 24102774 24103000 -20804570 - MLT1G1 LTR MaLR -29 566 301 414 228 235 7 chr21 24103025 24103161 -20804409 - L2 LINE L2 -882 2432 2266 1491 238 97 28 chr21 24103305 24103750 -20803820 + MLT1G1 LTR MaLR 1 525 -70 2461 47 3 10 chr21 24103834 24104131 -20803439 - AluY SINE Alu -16 295 1 266 253 48 36 chr21 24104152 24104235 -20803335 + L2 LINE L2 3188 3271 -1 2182 120 10 0 chr21 24104354 24104654 -20802916 - AluSx SINE Alu -9 303 1 2098 122 3 7 chr21 24105132 24105435 -20802135 - AluSx SINE Alu -10 302 1 306 252 75 37 chr21 24105702 24105809 -20801761 - MER5A DNA MER1_type -43 146 36 237 266 86 55 chr21 24105703 24105831 -20801739 + MER5A DNA MER1_type 55 186 -3 * 272 294 0 15 chr21 24105972 24106040 -20801530 + MER5B DNA MER1_type 6 72 -106 2426 89 3 6 chr21 24106321 24106635 -20800935 + AluSq SINE Alu 1 313 0 677 281 159 36 chr21 24107293 24108039 -20799531 + HAL1b LINE L1 13 850 -498 2521 68 0 7 chr21 24108130 24108439 -20799131 + AluY SINE Alu 1 307 -4 2021 90 52 0 chr21 24108498 24108806 -20798764 + AluSx SINE Alu 1 322 0 305 309 50 40 chr21 24108889 24109167 -20798403 + L1P LINE L1 2110 2390 -3756 * 338 209 45 97 chr21 24109141 24109275 -20798295 + L1MC/D LINE L1 5339 5465 -2343 4132 113 5 0 chr21 24109514 24110065 -20797505 + MER41A LTR ERV1 1 554 0 885 209 59 0 chr21 24110561 24110748 -20796822 + MLT1A2 LTR MaLR 3 200 -174 2506 157 43 2 chr21 24110748 24111168 -20796402 + LTR36 LTR ERV1 1 437 -174 306 0 0 0 chr21 24111168 24111202 -20796368 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 579 87 65 11 chr21 24111226 24111318 -20796252 + AluSg/x SINE Alu 208 304 -5 372 253 0 0 chr21 24111319 24111402 -20796168 + MER20 DNA MER1_type 137 219 0 22 0 0 0 chr21 24111964 24111986 -20795584 + AT_rich Low_complexity Low_complexity 1 22 0 2162 119 0 0 chr21 24114279 24114573 -20792997 + AluSx SINE Alu 1 294 -18 1858 141 20 13 chr21 24114573 24114877 -20792693 + AluSg SINE Alu 1 306 -4 1945 92 70 11 chr21 24115062 24115333 -20792237 - AluSq SINE Alu -22 291 5 2203 105 7 3 chr21 24117559 24117854 -20789716 - AluSx SINE Alu -16 296 1 207 0 0 0 chr21 24118677 24118700 -20788870 + (A)n Simple_repeat Simple_repeat 1 23 0 1780 194 48 9 chr21 24118754 24119089 -20788481 + MER7A DNA MER2_type 1 346 0 187 224 69 17 chr21 24119557 24119615 -20787955 + L3b LINE CR1 1289 1349 -234 264 372 18 9 chr21 24120070 24120183 -20787387 - MER5A DNA MER1_type 0 189 76 2102 164 40 5 chr21 24120253 24120626 -20786944 + MLT1B LTR MaLR 1 386 -4 2177 123 0 19 chr21 24120718 24121034 -20786536 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr21 24121135 24121161 -20786409 + AT_rich Low_complexity Low_complexity 1 26 0 2121 85 64 0 chr21 24121618 24121899 -20785671 + AluSx SINE Alu 1 299 -13 277 233 120 57 chr21 24121920 24122057 -20785513 + MIR3 SINE MIR 57 201 -7 468 111 28 0 chr21 24122060 24122132 -20785438 - Tigger1 DNA MER2_type -54 2364 2291 186 43 0 0 chr21 24123206 24123229 -20784341 + (A)n Simple_repeat Simple_repeat 1 23 0 14496 112 45 28 chr21 24124120 24126336 -20781234 + Tigger1 DNA MER2_type 61 2320 -98 2103 104 28 3 chr21 24126336 24126623 -20780947 - AluSg SINE Alu -16 294 1 14496 112 45 28 chr21 24126623 24126724 -20780846 + Tigger1 DNA MER2_type 2320 2418 0 2036 107 48 10 chr21 24128283 24128573 -20778997 - AluSg SINE Alu -9 301 1 218 310 42 14 chr21 24129650 24129721 -20777849 - L3b LINE CR1 -5 1578 1506 484 282 74 56 chr21 24129765 24129981 -20777589 - L3 LINE CR1 -167 1410 1191 305 394 72 27 chr21 24130023 24130315 -20777255 - L3 LINE CR1 -1083 494 190 1722 238 61 8 chr21 24130461 24130974 -20776596 + MLT1F LTR MaLR 10 539 -3 2116 100 0 82 chr21 24131411 24131742 -20775828 + AluSx SINE Alu 2 305 -7 2269 62 49 3 chr21 24131879 24132167 -20775403 + AluY SINE Alu 1 301 -10 1700 205 7 0 chr21 24132176 24132483 -20775087 + AluSx SINE Alu 1 309 -3 24 38 0 38 chr21 24134217 24134245 -20773325 + AT_rich Low_complexity Low_complexity 1 28 -23 2227 110 3 7 chr21 24134245 24134554 -20773016 + AluSx SINE Alu 1 308 -4 24 38 0 38 chr21 24134554 24134578 -20772992 + AT_rich Low_complexity Low_complexity 28 51 0 213 295 88 62 chr21 24137486 24137679 -20769891 + MIR SINE MIR 54 251 -11 198 371 21 10 chr21 24138098 24138195 -20769375 + MIR SINE MIR 29 126 -82 639 272 89 10 chr21 24139871 24140073 -20767497 - MIR SINE MIR -17 245 28 2575 55 0 13 chr21 24140141 24140449 -20767121 + AluY SINE Alu 1 304 -7 2116 102 3 22 chr21 24141275 24141589 -20765981 - AluY SINE Alu -3 308 1 21 0 0 0 chr21 24141958 24141979 -20765591 + AT_rich Low_complexity Low_complexity 1 21 0 200 228 0 70 chr21 24142285 24142342 -20765228 + MIR SINE MIR 102 154 -108 201 222 0 0 chr21 24143151 24143187 -20764383 + (CAG)n Simple_repeat Simple_repeat 2 37 0 446 271 88 41 chr21 24143190 24143360 -20764210 - MIR SINE MIR -23 239 62 616 321 53 52 chr21 24144987 24145477 -20762093 + L2 LINE L2 2140 2633 -681 864 181 161 74 chr21 24145477 24145709 -20761861 + MLT1A1 LTR MaLR 1 272 -93 2701 30 0 0 chr21 24145709 24146012 -20761558 - AluY SINE Alu -8 303 1 864 181 161 74 chr21 24146012 24146115 -20761455 + MLT1A1 LTR MaLR 272 365 0 616 321 53 52 chr21 24146115 24146129 -20761441 + L2 LINE L2 2633 2645 -669 206 362 72 26 chr21 24146499 24146651 -20760919 - MIR SINE MIR -98 164 6 1496 116 23 0 chr21 24147243 24147459 -20760111 - AluSx SINE Alu -91 221 1 2268 110 3 0 chr21 24148141 24148441 -20759129 + AluSg SINE Alu 1 301 -9 4469 54 7 20 chr21 24148920 24149525 -20758045 + L1PA8 LINE L1 5232 5829 -343 43551 32 23 2 chr21 24149527 24155552 -20752018 + L1PA2 LINE L1 1 6155 0 2799 69 6 8 chr21 24155594 24155954 -20751616 + L1PA8 LINE L1 5814 6172 0 367 297 188 0 chr21 24156584 24156712 -20750858 + MER5A DNA MER1_type 32 183 -6 2124 110 3 25 chr21 24156812 24157131 -20750439 + AluSx SINE Alu 1 312 0 241 283 182 47 chr21 24157679 24157842 -20749728 - MIR SINE MIR -37 171 15 2122 62 65 7 chr21 24157913 24158188 -20749382 + AluY SINE Alu 17 307 -4 2240 71 7 0 chr21 24159222 24159538 -20748032 + AluY SINE Alu 1 318 0 210 37 0 0 chr21 24159591 24159618 -20747952 + (CA)n Simple_repeat Simple_repeat 2 28 0 431 184 0 0 chr21 24159619 24159695 -20747875 + L1MC4 LINE L1 7810 7885 -157 1545 128 132 11 chr21 24159913 24160179 -20747391 - AluJb SINE Alu -14 298 1 23 54 0 0 chr21 24160423 24160460 -20747110 + AT_rich Low_complexity Low_complexity 1 37 0 250 323 32 11 chr21 24161158 24161251 -20746319 - MER91A DNA MER1_type -54 142 48 268 324 93 0 chr21 24161292 24161400 -20746170 - MER91C DNA MER1_type 0 140 23 21 0 0 0 chr21 24161742 24161763 -20745807 + AT_rich Low_complexity Low_complexity 1 21 0 532 239 51 28 chr21 24162551 24162727 -20744843 + L1MC5 LINE L1 7346 7525 -436 189 0 0 0 chr21 24163487 24163508 -20744062 + (AAGTG)n Simple_repeat Simple_repeat 3 23 0 1018 209 47 18 chr21 24164136 24164256 -20743314 - L1MA4 LINE L1 0 6300 6185 1827 176 0 13 chr21 24164256 24164563 -20743007 - AluJo SINE Alu -9 303 1 1018 209 47 18 chr21 24164563 24164720 -20742850 - L1MA4 LINE L1 -115 6185 6015 21 36 0 0 chr21 24164943 24164971 -20742599 + AT_rich Low_complexity Low_complexity 1 28 0 1530 201 101 30 chr21 24165086 24165520 -20742050 + MLT1C LTR MaLR 3 467 0 2184 106 3 3 chr21 24165602 24165895 -20741675 - AluSg SINE Alu -17 293 1 2422 96 0 0 chr21 24166721 24167023 -20740547 + AluSg SINE Alu 1 302 -8 1515 183 46 53 chr21 24167270 24167434 -20740136 + MLT1B LTR MaLR 1 165 -225 2209 76 42 0 chr21 24167434 24167723 -20739847 + AluSp SINE Alu 1 301 -12 1515 183 46 53 chr21 24167723 24167951 -20739619 + MLT1B LTR MaLR 165 390 0 1707 172 3 19 chr21 24168927 24169235 -20738335 - AluJo SINE Alu -9 303 1 292 238 50 69 chr21 24169749 24169850 -20737720 - MER5A DNA MER1_type -90 99 1 905 198 0 51 chr21 24171951 24172148 -20735422 - MER5A DNA MER1_type 0 189 3 2160 111 3 0 chr21 24172638 24172936 -20734634 - AluSg SINE Alu -11 299 1 192 329 171 0 chr21 24173512 24173594 -20733976 + MIR3 SINE MIR 84 179 -29 1169 131 15 77 chr21 24173928 24174202 -20733368 - L1MB3 LINE L1 -8 6175 5919 585 158 20 10 chr21 24174210 24174311 -20733259 - U6 snRNA snRNA -4 103 2 2331 72 17 0 chr21 24174323 24174613 -20732957 - AluSp SINE Alu -18 295 1 1976 116 60 0 chr21 24174613 24174896 -20732674 - AluSg SINE Alu -9 301 1 2536 205 22 70 chr21 24176501 24176862 -20730708 + L1M4 LINE L1 4557 4934 -1212 1547 189 64 4 chr21 24176862 24177143 -20730427 - AluJb SINE Alu -13 299 2 2536 205 22 70 chr21 24177143 24177546 -20730024 + L1M4 LINE L1 4934 5280 -866 2181 141 0 0 chr21 24177546 24177858 -20729712 + AluSx SINE Alu 1 312 0 2536 205 22 70 chr21 24177858 24177922 -20729648 + L1M4 LINE L1 5280 5346 -800 2364 98 0 7 chr21 24178883 24179188 -20728382 + AluSx SINE Alu 1 303 -9 22 56 0 0 chr21 24180244 24180280 -20727290 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr21 24180302 24180349 -20727221 + AT_rich Low_complexity Low_complexity 1 47 0 278 235 68 98 chr21 24180996 24181128 -20726442 + MIR SINE MIR 20 147 -115 331 331 124 18 chr21 24181154 24181323 -20726247 - MER91A DNA MER1_type -9 187 1 1968 93 7 11 chr21 24181531 24181800 -20725770 - AluSq SINE Alu -2 311 44 270 220 68 42 chr21 24182897 24183015 -20724555 - L1MC5 LINE L1 -36 7925 7805 345 47 0 0 chr21 24183345 24183388 -20724182 + (CA)n Simple_repeat Simple_repeat 2 44 0 758 61 0 0 chr21 24183410 24183508 -20724062 - L1PA5 LINE L1 -1 6153 6056 216 0 0 0 chr21 24183905 24183929 -20723641 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 705 91 0 20 chr21 24184267 24184366 -20723204 - AluSq/x SINE Alu -187 125 29 530 224 20 0 chr21 24185003 24185150 -20722420 + L1MD2 LINE L1 6201 6350 -9 198 326 23 35 chr21 24185283 24185369 -20722201 + MIR SINE MIR 59 143 -119 337 22 0 0 chr21 24185916 24185962 -20721608 - AluSc SINE Alu -2 306 261 324 293 65 79 chr21 24187976 24188205 -20719365 + L2 LINE L2 3040 3265 -7 1359 216 0 21 chr21 24188897 24189179 -20718391 + AluJb SINE Alu 37 312 0 2085 91 7 14 chr21 24189450 24189737 -20717833 - AluSc SINE Alu -24 285 1 431 250 39 107 chr21 24189962 24190242 -20717328 - MIR SINE MIR 0 262 2 2289 92 0 0 chr21 24190314 24190617 -20716953 + AluSg SINE Alu 1 303 -7 4636 83 33 3 chr21 24191130 24191771 -20715799 - PABL_A LTR ERV1 0 660 1 424 114 0 14 chr21 24192183 24192253 -20715317 + MER4A LTR ERV1 1 69 -595 1529 151 9 84 chr21 24192271 24192603 -20714967 + MER4A LTR ERV1 358 664 0 216 296 14 0 chr21 24193532 24193603 -20713967 + L2 LINE L2 3242 3313 0 2035 110 3 24 chr21 24193982 24194273 -20713297 - AluSx SINE Alu -25 287 3 2336 82 33 0 chr21 24195757 24196060 -20711510 - AluSp SINE Alu 0 313 1 1603 151 19 68 chr21 24199310 24199621 -20707949 - AluJo SINE Alu -16 296 1 2280 76 0 30 chr21 24200234 24200537 -20707033 + AluY SINE Alu 17 310 -1 1639 179 24 7 chr21 24200728 24201110 -20706460 + AluJo SINE Alu 11 397 0 312 158 0 0 chr21 24201099 24201156 -20706414 + GA-rich Low_complexity Low_complexity 3 59 0 216 0 0 0 chr21 24201184 24201208 -20706362 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 184 318 28 47 chr21 24201864 24201971 -20705599 + MIR SINE MIR 56 160 -102 2409 255 66 29 chr21 24202123 24202211 -20705359 + L1MEc LINE L1 45 128 -6268 2381 75 3 3 chr21 24202211 24202505 -20705065 - AluSc SINE Alu -14 295 2 2409 255 66 29 chr21 24202505 24203309 -20704261 + L1MEc LINE L1 128 970 -5426 347 313 126 0 chr21 24203436 24203698 -20703872 + L1MEc LINE L1 1406 1700 -4696 832 192 13 19 chr21 24203703 24203859 -20703711 - FRAM SINE Alu -20 156 2 1597 223 101 67 chr21 24203864 24204812 -20702758 + L1MEc LINE L1 1703 2644 -3571 2266 104 10 10 chr21 24204821 24205128 -20702442 + AluSx SINE Alu 1 307 -5 297 291 39 101 chr21 24205312 24205477 -20702093 + MIR3 SINE MIR 18 173 -35 1681 162 2 121 chr21 24205477 24205891 -20701679 + MLT1A1 LTR MaLR 1 365 0 297 291 39 101 chr21 24205891 24205904 -20701666 + MIR3 SINE MIR 173 185 -23 1743 174 90 14 chr21 24207890 24208258 -20699312 + MSTD LTR MaLR 1 396 0 264 300 125 40 chr21 24209514 24209714 -20697856 - MIR SINE MIR -39 223 7 26 0 0 0 chr21 24209717 24209743 -20697827 + AT_rich Low_complexity Low_complexity 1 26 0 2251 113 0 0 chr21 24209832 24210133 -20697437 + AluSc SINE Alu 1 301 -8 231 0 50 25 chr21 24211821 24211861 -20695709 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1804 190 139 7 chr21 24211901 24212354 -20695216 - MER74A LTR ERVL 0 558 46 198 0 0 0 chr21 24212872 24212894 -20694676 + (T)n Simple_repeat Simple_repeat 1 22 0 332 310 61 51 chr21 24212896 24213093 -20694477 + MIR3 SINE MIR 4 202 -6 186 43 0 0 chr21 24215015 24215038 -20692532 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 377 341 56 19 chr21 24215047 24215267 -20692303 + MIR SINE MIR 30 255 -7 208 314 0 0 chr21 24215385 24215487 -20692083 + A-rich Low_complexity Low_complexity 1 102 0 2282 186 104 19 chr21 24216408 24216887 -20690683 + MLT2B1 LTR ERVL 1 520 0 1870 82 97 0 chr21 24217584 24217688 -20689882 + AluSp SINE Alu 1 93 -217 180 0 0 0 chr21 24217688 24217708 -20689862 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1870 82 97 0 chr21 24217708 24217888 -20689682 + AluSp SINE Alu 93 310 0 587 274 168 38 chr21 24218977 24219580 -20687990 - L2 LINE L2 -23 3290 2603 2484 86 0 0 chr21 24219580 24219884 -20687686 + AluSp SINE Alu 1 304 -9 587 274 168 38 chr21 24219884 24219936 -20687634 - L2 LINE L2 -710 2603 2559 2777 127 27 7 chr21 24222043 24222483 -20685087 + L1PB3 LINE L1 5704 6152 -2 2245 107 0 0 chr21 24222541 24222839 -20684731 - AluSq SINE Alu -15 298 1 840 250 11 0 chr21 24222839 24223019 -20684551 + MER58A DNA MER1_type 42 223 -1 1235 156 194 45 chr21 24223097 24223262 -20684308 + MER46B DNA MER2_type 1 112 -2619 2110 116 0 17 chr21 24223262 24223564 -20684006 + AluSx SINE Alu 1 297 -15 1235 156 194 45 chr21 24223564 24223712 -20683858 + MER46B DNA MER2_type 112 236 0 1031 196 73 0 chr21 24224907 24225111 -20682459 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr21 24225339 24225360 -20682210 + AT_rich Low_complexity Low_complexity 1 21 0 298 329 93 12 chr21 24226626 24226787 -20680783 + MIR SINE MIR 49 222 -40 689 227 119 101 chr21 24227652 24228198 -20679372 + LTR38 LTR ERV1 1 556 0 240 35 0 0 chr21 24229951 24229980 -20677590 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2194 121 0 3 chr21 24230171 24230476 -20677094 + AluSx SINE Alu 1 304 -8 35 54 0 0 chr21 24231994 24232050 -20675520 + AT_rich Low_complexity Low_complexity 1 56 0 23 78 0 0 chr21 24232094 24232145 -20675425 + AT_rich Low_complexity Low_complexity 1 51 0 1732 143 50 7 chr21 24232673 24232953 -20674617 - AluSx SINE Alu -12 300 9 411 133 19 114 chr21 24235399 24235435 -20672135 + L1MD2 LINE L1 6264 6302 -57 2285 72 6 38 chr21 24235435 24235754 -20671816 - AluY SINE Alu -2 309 1 411 133 19 114 chr21 24235754 24235815 -20671755 + L1MD2 LINE L1 6302 6353 -6 3811 41 2 2 chr21 24235815 24236253 -20671317 - L1PA6 LINE L1 0 6154 5717 2050 141 0 0 chr21 24236294 24236591 -20670979 + AluSx SINE Alu 1 297 -15 189 94 0 0 chr21 24238526 24238558 -20669012 + (TTATA)n Simple_repeat Simple_repeat 5 36 0 339 142 90 8 chr21 24238566 24238700 -20668870 + (TA)n Simple_repeat Simple_repeat 2 146 0 390 202 97 81 chr21 24239645 24239769 -20667801 + MER63 DNA MER1_type 1 751 -310 197 227 23 0 chr21 24240115 24240159 -20667411 + MER5A DNA MER1_type 9 53 -136 2349 91 10 0 chr21 24240742 24241050 -20666520 - AluSx SINE Alu -1 311 1 2225 115 0 34 chr21 24241690 24242013 -20665557 + AluSx SINE Alu 1 312 0 970 146 19 0 chr21 24242027 24242185 -20665385 + AluSg/x SINE Alu 121 281 -31 2141 140 0 3 chr21 24242229 24242536 -20665034 - AluSx SINE Alu -4 308 3 869 153 93 0 chr21 24242634 24242784 -20664786 + MER20 DNA MER1_type 56 219 0 1367 162 60 25 chr21 24243177 24243461 -20664109 - AluJo SINE Alu -18 294 1 1828 131 21 25 chr21 24243855 24244188 -20663382 + AluSx SINE Alu 1 332 0 2185 120 0 0 chr21 24244202 24244502 -20663068 + AluSx SINE Alu 6 305 -7 23 68 0 0 chr21 24244737 24244781 -20662789 + AT_rich Low_complexity Low_complexity 1 44 0 286 196 0 0 chr21 24244810 24244866 -20662704 - FLAM SINE Alu 0 133 78 212 338 12 25 chr21 24245808 24245888 -20661682 + L2 LINE L2 3190 3268 -4 565 299 32 32 chr21 24246449 24246666 -20660904 - MIR SINE MIR -6 256 40 247 297 174 0 chr21 24246675 24246813 -20660757 - MIR SINE MIR -17 245 84 759 256 56 14 chr21 24246945 24247160 -20660410 - MER58A DNA MER1_type 0 224 1 2236 90 3 10 chr21 24247191 24247490 -20660080 - AluSx SINE Alu -10 302 6 224 339 0 18 chr21 24247677 24247733 -20659837 + MIR SINE MIR 44 98 -164 2204 120 0 0 chr21 24247733 24248032 -20659538 - AluSg SINE Alu -11 299 1 27 0 0 0 chr21 24248093 24248120 -20659450 + GC_rich Low_complexity Low_complexity 1 27 0 1994 89 0 4 chr21 24248124 24248381 -20659189 + AluY SINE Alu 46 301 -10 606 164 106 0 chr21 24248487 24248591 -20658979 + FLAM_A SINE Alu 20 134 -8 195 273 57 34 chr21 24248687 24248775 -20658795 + L2 LINE L2 3223 3312 -1 433 102 0 0 chr21 24249107 24249166 -20658404 - Alu SINE Alu -12 300 242 273 326 68 76 chr21 24250555 24250819 -20656751 + L2 LINE L2 2996 3257 -15 1315 225 29 10 chr21 24251302 24251613 -20655957 + L1MB7 LINE L1 5853 6169 -15 2390 90 7 0 chr21 24252210 24252511 -20655059 - AluSx SINE Alu -9 303 1 284 206 183 32 chr21 24252546 24252672 -20654898 - L2 LINE L2 -4 3309 3165 219 114 0 0 chr21 24253029 24253064 -20654506 + (TGG)n Simple_repeat Simple_repeat 3 37 0 297 299 0 0 chr21 24253088 24253205 -20654365 + CT-rich Low_complexity Low_complexity 1 117 0 1937 180 53 27 chr21 24253423 24253834 -20653736 + L1MC2 LINE L1 5911 6332 -12 447 141 0 0 chr21 24254342 24254406 -20653164 - MER5A DNA MER1_type 0 189 126 1512 161 17 47 chr21 24254419 24254717 -20652853 + AluJo SINE Alu 9 297 -15 978 143 25 19 chr21 24254719 24254880 -20652690 + AluJo/FRAM SINE Alu 136 297 -15 582 177 44 0 chr21 24254919 24255032 -20652538 - MER5A DNA MER1_type -71 118 1 2276 165 25 8 chr21 24257790 24258189 -20649381 + L1MC1 LINE L1 5921 6326 -7 1927 127 65 3 chr21 24259076 24259368 -20648202 + AluSx SINE Alu 1 310 -2 373 317 123 55 chr21 24259879 24260333 -20647237 - L2 LINE L2 -4 3309 2825 511 265 7 37 chr21 24260884 24261020 -20646550 + MER58C DNA MER1_type 39 170 -45 269 302 57 13 chr21 24261497 24261656 -20645914 + L1MC5 LINE L1 7612 7777 -184 502 273 15 72 chr21 24262053 24262317 -20645253 - L2 LINE L2 -39 3274 3026 2668 88 5 59 chr21 24262575 24262950 -20644620 - THE1A LTR MaLR 0 355 1 573 296 78 22 chr21 24263581 24263811 -20643759 + MIR SINE MIR 4 246 -16 35 24 0 0 chr21 24263945 24263987 -20643583 + AT_rich Low_complexity Low_complexity 1 42 0 2720 117 5 5 chr21 24264287 24264662 -20642908 + THE1C LTR MaLR 1 375 0 2311 85 16 0 chr21 24265525 24265831 -20641739 + AluY SINE Alu 1 311 0 357 314 95 54 chr21 24265930 24266166 -20641404 - L2 LINE L2 -3 3310 3058 1529 167 82 11 chr21 24266166 24266436 -20641134 + AluJb SINE Alu 1 289 -23 357 314 95 54 chr21 24266436 24266495 -20641075 - L2 LINE L2 -255 3058 3003 335 287 216 76 chr21 24266773 24267337 -20640233 - L2 LINE L2 -535 2779 2137 4161 124 56 7 chr21 24267909 24268133 -20639437 + L1MA5A LINE L1 5554 5766 -531 246 105 0 0 chr21 24268133 24268171 -20639399 + (TG)n Simple_repeat Simple_repeat 1 38 0 4161 124 56 7 chr21 24268171 24268655 -20638915 + L1MA5A LINE L1 5766 6297 0 25 0 0 0 chr21 24269129 24269154 -20638416 + AT_rich Low_complexity Low_complexity 1 25 0 2156 100 34 0 chr21 24269649 24269940 -20637630 + AluSx SINE Alu 6 306 -6 38 75 0 0 chr21 24270979 24271059 -20636511 + AT_rich Low_complexity Low_complexity 1 80 0 1627 152 87 9 chr21 24271099 24271434 -20636136 - MER46B DNA MER2_type 0 236 1 2330 99 0 7 chr21 24271482 24271785 -20635785 + AluSx SINE Alu 1 301 -11 830 158 58 0 chr21 24271785 24271953 -20635617 + AluSg/x SINE Alu 135 310 0 1741 156 7 46 chr21 24273783 24274090 -20633480 + AluJo SINE Alu 1 295 -17 2055 108 18 0 chr21 24274387 24274694 -20632876 - AluSx SINE Alu 0 312 1 3494 164 88 124 chr21 24274924 24275694 -20631876 + Looper DNA T2_type 1 684 -874 2183 92 3 0 chr21 24275694 24276002 -20631568 - AluSp SINE Alu 0 309 1 3494 164 88 124 chr21 24276002 24276847 -20630723 + Looper DNA T2_type 684 1558 0 2186 118 51 28 chr21 24276990 24277346 -20630224 - THE1B LTR MaLR 0 364 1 1720 117 0 4 chr21 24277374 24277605 -20629965 + AluSq SINE Alu 84 313 0 23 78 0 0 chr21 24278772 24278823 -20628747 + AT_rich Low_complexity Low_complexity 1 51 0 1031 166 80 61 chr21 24278919 24279198 -20628372 + MER33 DNA MER1_type 1 288 -2297 2247 98 0 26 chr21 24279198 24279505 -20628065 + AluSg SINE Alu 1 299 -11 1031 166 80 61 chr21 24279505 24279538 -20628032 + MER33 DNA MER1_type 288 319 -5 587 73 0 0 chr21 24279580 24279662 -20627908 + MER30 DNA MER1_type 112 193 -37 255 274 0 0 chr21 24280490 24280541 -20627029 - L2 LINE L2 -5 3267 3217 244 169 68 34 chr21 24281188 24281247 -20626323 - MER94 DNA DNA -2 132 72 24 0 0 0 chr21 24281826 24281850 -20625720 + AT_rich Low_complexity Low_complexity 1 24 0 784 186 6 35 chr21 24283355 24283527 -20624043 - MER20 DNA MER1_type -3 216 50 604 143 41 0 chr21 24284160 24284258 -20623312 + L1MC1 LINE L1 6223 6324 -9 412 165 63 0 chr21 24285229 24285308 -20622262 + L2 LINE L2 3229 3312 -1 197 367 11 22 chr21 24285444 24285534 -20622036 + L2 LINE L2 3158 3246 -26 225 0 0 0 chr21 24285784 24285809 -20621761 + (T)n Simple_repeat Simple_repeat 1 25 0 187 390 0 0 chr21 24285829 24285911 -20621659 - L2 LINE L2 -636 2678 2597 221 0 0 33 chr21 24286577 24286607 -20620963 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1844 166 0 3 chr21 24287200 24287501 -20620069 - AluJo SINE Alu -12 300 1 259 170 80 59 chr21 24288219 24288314 -20619256 + L1MC1 LINE L1 6244 6344 0 266 0 29 0 chr21 24288630 24288664 -20618906 + (CA)n Simple_repeat Simple_repeat 1 35 0 371 252 93 53 chr21 24288810 24288961 -20618609 - MIR3 SINE MIR -44 164 8 292 299 75 33 chr21 24289159 24289373 -20618197 - MLT1J LTR MaLR -49 462 240 624 165 8 50 chr21 24289822 24289943 -20617627 + FLAM_A SINE Alu 10 125 -17 2690 7 0 0 chr21 24289963 24290255 -20617315 + AluY SINE Alu 1 292 -19 313 270 56 67 chr21 24290665 24290772 -20616798 - MIR SINE MIR -28 234 128 2479 80 0 6 chr21 24290772 24291084 -20616486 + AluSg SINE Alu 1 310 0 313 270 56 67 chr21 24291084 24291154 -20616416 - MIR SINE MIR -134 128 59 265 243 57 0 chr21 24291149 24291219 -20616351 + MIR SINE MIR 176 249 -13 * 1014 272 115 37 chr21 24291646 24292328 -20615242 - L2 LINE L2 -54 3259 2516 2116 103 14 0 chr21 24293097 24293378 -20614192 + AluSg SINE Alu 1 285 -25 273 89 0 0 chr21 24293378 24293423 -20614147 + (CA)n Simple_repeat Simple_repeat 2 46 0 2111 110 4 0 chr21 24293544 24293858 -20613712 + AluSx SINE Alu 1 315 0 2022 160 3 6 chr21 24293914 24294227 -20613343 - AluJb SINE Alu 0 312 1 4463 166 124 92 chr21 24294227 24294916 -20612654 + L1MC3 LINE L1 6376 7041 -744 274 259 12 12 chr21 24294916 24295001 -20612569 + MLT1F1 LTR MaLR 35 119 -448 4463 166 124 92 chr21 24295001 24295593 -20611977 + L1MC3 LINE L1 7041 7785 0 2191 174 6 60 chr21 24295629 24296000 -20611570 - LTR32 LTR ERVL 0 471 130 2113 123 0 16 chr21 24296000 24296317 -20611253 - AluSx SINE Alu 0 312 1 2191 174 6 60 chr21 24296317 24296428 -20611142 - LTR32 LTR ERVL -341 130 15 192 262 252 9 chr21 24296728 24296835 -20610735 - MIR3 SINE MIR -52 156 24 312 286 73 51 chr21 24297064 24297242 -20610328 - MER5A DNA MER1_type -1 188 7 502 204 197 0 chr21 24297255 24297392 -20610178 - MER5A DNA MER1_type 0 189 26 942 121 20 161 chr21 24297496 24297794 -20609776 - L1MB3 LINE L1 -45 6138 5883 1365 174 37 31 chr21 24298233 24298555 -20609015 - MER33 DNA MER1_type 0 324 1 1612 168 19 39 chr21 24299522 24299832 -20607738 - AluJo SINE Alu -8 304 1 191 314 153 16 chr21 24304216 24304340 -20603230 - L2 LINE L2 -1053 2261 2121 2105 100 24 0 chr21 24305637 24305927 -20601643 + AluSx SINE Alu 1 297 -15 363 265 51 17 chr21 24306328 24306445 -20601125 - L2 LINE L2 0 3313 3193 2377 83 0 10 chr21 24307046 24307358 -20600212 - AluSq SINE Alu -4 309 1 2409 90 0 0 chr21 24307945 24308256 -20599314 + AluY SINE Alu 1 311 0 319 289 215 35 chr21 24308381 24308720 -20598850 - HAL1 LINE L1 -130 2377 1978 440 206 30 46 chr21 24308765 24308896 -20598674 - HAL1 LINE L1 -570 1937 1809 21 57 0 0 chr21 24309576 24309611 -20597959 + AT_rich Low_complexity Low_complexity 1 35 0 2314 77 10 3 chr21 24309927 24310226 -20597344 + AluSp SINE Alu 1 301 -12 234 158 0 0 chr21 24310784 24310822 -20596748 - MER4D LTR ERV1 -74 798 761 2274 115 0 3 chr21 24311005 24311310 -20596260 + AluSx SINE Alu 1 304 -8 2213 107 0 16 chr21 24311650 24311958 -20595612 + AluSg1 SINE Alu 2 304 -5 337 269 46 19 chr21 24311964 24312072 -20595498 - L1MC5 LINE L1 -1210 6751 6641 2523 83 23 10 chr21 24312423 24312820 -20594750 - LTR7 LTR ERV1 -48 402 1 386 348 113 35 chr21 24312870 24313099 -20594471 - HAL1b LINE L1 -594 754 492 2177 105 0 3 chr21 24313099 24313416 -20594154 + AluSq SINE Alu 1 316 0 386 348 113 35 chr21 24313416 24313495 -20594075 - HAL1b LINE L1 -856 492 421 22 70 0 0 chr21 24313647 24313690 -20593880 + AT_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr21 24314109 24314156 -20593414 + AT_rich Low_complexity Low_complexity 1 47 0 321 235 95 68 chr21 24314372 24314593 -20592977 + L1ME4a LINE L1 5672 5898 -223 238 204 0 0 chr21 24314694 24314748 -20592822 + L1ME4a LINE L1 6065 6118 -3 2445 52 7 7 chr21 24315391 24315701 -20591869 - AluY SINE Alu -1 310 1 254 248 124 0 chr21 24316167 24316280 -20591290 - L1ME4a LINE L1 -3 6118 5992 298 324 29 29 chr21 24318015 24318120 -20589450 + MIR SINE MIR 21 125 -83 23 0 0 0 chr21 24319057 24319080 -20588490 + AT_rich Low_complexity Low_complexity 1 23 0 889 132 0 0 chr21 24319169 24319298 -20588272 - FLAM_C SINE Alu -2 131 3 194 171 0 73 chr21 24319580 24319621 -20587949 - L2 LINE L2 -89 3224 3187 234 0 0 0 chr21 24320666 24320692 -20586878 + (T)n Simple_repeat Simple_repeat 1 26 0 229 372 18 26 chr21 24320771 24320884 -20586686 - MER5A DNA MER1_type -21 168 57 201 338 22 72 chr21 24320774 24320913 -20586657 + MER5A DNA MER1_type 36 167 -22 * 1346 158 0 21 chr21 24321322 24321562 -20586008 - MER46A DNA MER2_type 0 236 2 1933 260 65 71 chr21 24322274 24323147 -20584423 - L2 LINE L2 -2180 1134 267 467 101 30 10 chr21 24323281 24323380 -20584190 + MER96B DNA MER1_type? 245 345 -72 3491 107 12 32 chr21 24323442 24324029 -20583541 + L1MC1 LINE L1 5759 6333 0 2289 83 0 7 chr21 24324998 24325298 -20582272 + AluSc SINE Alu 1 298 -11 321 212 9 18 chr21 24325704 24325817 -20581753 + (TA)n Simple_repeat Simple_repeat 1 112 0 2141 136 128 94 chr21 24325906 24326014 -20581556 + MER44D DNA MER2_type 2 105 -2382 2255 102 0 3 chr21 24326014 24326308 -20581262 - AluSc SINE Alu -16 293 1 2141 136 128 94 chr21 24326308 24326326 -20581244 + MER44D DNA MER2_type 105 121 -2366 760 162 0 0 chr21 24326326 24326443 -20581127 - FLAM_C SINE Alu -16 117 1 2141 136 128 94 chr21 24326443 24326846 -20580724 + MER44D DNA MER2_type 121 605 0 1042 138 6 0 chr21 24327800 24327960 -20579610 + FRAM SINE Alu 6 166 -10 205 339 71 27 chr21 24328433 24328545 -20579025 + L2 LINE L2 3180 3296 -17 2484 59 3 3 chr21 24328963 24329269 -20578301 + AluY SINE Alu 1 306 -5 48 0 0 0 chr21 24329334 24329382 -20578188 + AT_rich Low_complexity Low_complexity 1 48 0 279 252 10 39 chr21 24330142 24330245 -20577325 + L1MC5 LINE L1 7812 7911 -50 187 344 31 0 chr21 24330539 24330603 -20576967 - MIR SINE MIR -17 245 180 2373 88 3 0 chr21 24332253 24332561 -20575009 - AluSc SINE Alu 0 309 1 2527 42 0 7 chr21 24333247 24333553 -20574017 - AluY SINE Alu -7 304 1 2144 141 3 0 chr21 24333774 24334080 -20573490 + AluSx SINE Alu 2 308 -4 2029 128 30 3 chr21 24334491 24334789 -20572781 + AluSg SINE Alu 1 306 -4 1238 189 14 76 chr21 24335102 24335456 -20572114 - MLT1A2 LTR MaLR -42 332 1 207 100 0 0 chr21 24336233 24336263 -20571307 + (A)n Simple_repeat Simple_repeat 1 30 0 471 271 71 24 chr21 24336401 24336696 -20570874 + HAL1b LINE L1 620 928 -420 348 216 101 0 chr21 24337704 24337805 -20569765 - FRAM SINE Alu -67 99 1 411 198 60 9 chr21 24338515 24338631 -20568939 + LTR37B LTR ERV1 346 467 -1 883 215 36 72 chr21 24339299 24339634 -20567936 - MER33 DNA MER1_type 0 324 2 2268 91 13 3 chr21 24339768 24340076 -20567494 + AluSq SINE Alu 1 311 -2 235 294 59 24 chr21 24340096 24340181 -20567389 + L2 LINE L2 2743 2830 -484 2360 128 82 12 chr21 24340380 24340780 -20566790 + MSTA LTR MaLR 1 428 0 1930 134 0 11 chr21 24341333 24341633 -20565937 + AluSg SINE Alu 8 304 0 28 48 0 0 chr21 24341831 24341873 -20565697 + AT_rich Low_complexity Low_complexity 1 42 0 319 202 188 77 chr21 24342189 24342397 -20565173 + L1MC4a LINE L1 5811 6041 -1767 369 263 137 104 chr21 24342433 24342620 -20564950 + L1MC4a LINE L1 6155 6359 -1449 1626 163 43 7 chr21 24342620 24342902 -20564668 + AluJo SINE Alu 1 292 -20 369 263 137 104 chr21 24342902 24343049 -20564521 + L1MC4a LINE L1 6359 6500 -1308 523 174 43 29 chr21 24345457 24345595 -20561975 + MLT1F LTR MaLR 4 143 -399 427 215 19 28 chr21 24345673 24345780 -20561790 + MLT1F LTR MaLR 122 227 -315 23 54 0 0 chr21 24345996 24346033 -20561537 + AT_rich Low_complexity Low_complexity 1 37 0 2087 122 0 7 chr21 24348054 24348348 -20559222 - AluSx SINE Alu -20 292 1 248 88 0 0 chr21 24349190 24349224 -20558346 - HSMAR1 DNA Mariner -1253 34 1 1911 128 48 3 chr21 24349714 24350004 -20557566 - AluSx SINE Alu -9 303 1 23 33 0 0 chr21 24350049 24350079 -20557491 + AT_rich Low_complexity Low_complexity 1 30 0 202 240 20 0 chr21 24350763 24350813 -20556757 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 237 65 0 0 chr21 24350850 24350881 -20556689 + (CA)n Simple_repeat Simple_repeat 2 32 0 371 214 39 39 chr21 24351226 24351329 -20556241 + MLT1H LTR MaLR 431 533 -16 887 194 48 0 chr21 24351453 24351618 -20555952 - AluJo SINE Alu -139 173 1 1999 68 4 4 chr21 24352559 24352807 -20554763 - AluSg SINE Alu -19 291 44 62 36 0 0 chr21 24353874 24353957 -20553613 + AT_rich Low_complexity Low_complexity 1 83 0 563 172 64 69 chr21 24356420 24356624 -20550946 + ORSL DNA AcHobo 21 223 -52 629 124 35 142 chr21 24357767 24357936 -20549634 + MER20 DNA MER1_type 67 217 -2 369 347 74 11 chr21 24358803 24358979 -20548591 + MIR SINE MIR 23 209 -53 235 231 0 15 chr21 24359897 24359962 -20547608 - MER103 DNA DNA -98 68 5 2287 99 3 0 chr21 24360355 24360648 -20546922 + AluSg1 SINE Alu 1 294 -15 2230 91 3 10 chr21 24362112 24362444 -20545126 + AluSp SINE Alu 1 313 0 674 114 38 0 chr21 24363298 24363403 -20544167 + FAM SINE Alu 65 173 -12 1724 143 33 27 chr21 24364120 24364420 -20543150 + AluJb SINE Alu 1 302 -10 2149 77 45 3 chr21 24364668 24364955 -20542615 + AluSg SINE Alu 1 299 -11 688 130 96 0 chr21 24365239 24365354 -20542216 - AluJo SINE Alu -100 212 87 2781 187 121 14 chr21 24365383 24366051 -20541519 - MER21B LTR ERV1 -123 740 1 2283 108 3 0 chr21 24367017 24367403 -20540167 + AluSg SINE Alu 1 387 0 1431 99 56 170 chr21 24368094 24368418 -20539152 - AluSx SINE Alu -15 287 1 317 262 35 43 chr21 24369349 24369490 -20538080 + L1MC5 LINE L1 7742 7881 -80 1490 173 52 11 chr21 24369613 24369925 -20537645 + AluJo SINE Alu 1 323 0 324 224 53 0 chr21 24370610 24370686 -20536884 - MER5A DNA MER1_type -1 188 109 1986 88 53 0 chr21 24370809 24371113 -20536457 + AluSc SINE Alu 5 322 0 466 282 218 16 chr21 24372135 24372323 -20535247 + MIR SINE MIR 19 244 -18 305 223 174 25 chr21 24372849 24372970 -20534600 - MIR SINE MIR -1 261 123 1782 166 6 16 chr21 24373678 24373991 -20533579 + AluJo SINE Alu 1 310 -2 786 182 16 0 chr21 24374383 24374504 -20533066 + FLAM_C SINE Alu 1 123 -10 2513 112 65 23 chr21 24374602 24375030 -20532540 - L1MA9 LINE L1 0 6312 5867 2662 128 3 5 chr21 24375109 24375485 -20532085 - THE1C LTR MaLR 0 375 1 291 244 114 83 chr21 24376230 24376423 -20531147 + L3 LINE CR1 1346 1544 -33 1801 126 41 118 chr21 24376423 24376788 -20530782 - MER1B DNA MER1_type 0 337 1 1522 108 0 5 chr21 24377295 24377498 -20530072 + AluSx SINE Alu 52 253 -59 359 218 109 32 chr21 24377551 24377707 -20529863 - L1ME LINE L1 -678 5484 5317 430 209 149 85 chr21 24377726 24377927 -20529643 + L1MC5 LINE L1 7709 7922 -39 259 330 118 38 chr21 24379952 24380164 -20527406 - MIR SINE MIR -12 250 22 194 241 103 52 chr21 24380502 24380618 -20526952 + MIR SINE MIR 141 262 0 216 207 17 17 chr21 24381079 24381137 -20526433 + L2 LINE L2 2898 2955 -358 834 225 114 105 chr21 24381158 24381692 -20525878 - MER34 LTR ERV1 -3 539 1 385 289 100 37 chr21 24381730 24381789 -20525781 + L2 LINE L2 3111 3165 -148 474 101 0 0 chr21 24381789 24381858 -20525712 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 385 289 100 37 chr21 24381858 24381988 -20525582 + L2 LINE L2 3165 3312 -1 2052 139 59 19 chr21 24382754 24383078 -20524492 - MER1B DNA MER1_type 0 337 1 27 0 0 0 chr21 24383092 24383119 -20524451 + AT_rich Low_complexity Low_complexity 1 27 0 2620 41 0 28 chr21 24383208 24383526 -20524044 + AluY SINE Alu 3 311 0 291 135 0 0 chr21 24383529 24383581 -20523989 + L1M LINE L1 5317 5368 -932 207 0 0 0 chr21 24383582 24383605 -20523965 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 30 0 0 0 chr21 24383811 24383841 -20523729 + AT_rich Low_complexity Low_complexity 1 30 0 3661 155 15 10 chr21 24383922 24384527 -20523043 + L1PB3 LINE L1 5545 6152 -2 693 204 0 0 chr21 24384720 24384833 -20522737 - FLAM_C SINE Alu -25 118 6 241 330 126 39 chr21 24385886 24386068 -20521502 + MIR3 SINE MIR 4 201 -7 1025 208 112 43 chr21 24386107 24386200 -20521370 + MER33 DNA MER1_type 1 86 -2499 1943 134 3 47 chr21 24386200 24386521 -20521049 + AluSx SINE Alu 4 310 -2 1025 208 112 43 chr21 24386521 24386730 -20520840 + MER33 DNA MER1_type 86 324 0 2405 68 0 19 chr21 24386941 24387249 -20520321 + AluY SINE Alu 1 302 -9 25 51 0 0 chr21 24388021 24388060 -20519510 + AT_rich Low_complexity Low_complexity 1 39 0 2268 103 0 0 chr21 24388306 24388597 -20518973 - AluSx SINE Alu -21 291 1 21 0 0 0 chr21 24388937 24388958 -20518612 + AT_rich Low_complexity Low_complexity 1 21 0 291 211 128 45 chr21 24389614 24389770 -20517800 + MLT1J LTR MaLR 9 177 -334 244 297 167 57 chr21 24389917 24390271 -20517299 + L2 LINE L2 2878 3270 -2 2341 75 10 3 chr21 24390314 24390607 -20516963 - AluY SINE Alu -16 295 1 1693 163 35 7 chr21 24393274 24393562 -20514008 + AluJo SINE Alu 1 296 -16 2192 108 3 40 chr21 24394174 24394497 -20513073 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr21 24395089 24395121 -20512449 + AT_rich Low_complexity Low_complexity 1 32 0 2473 80 0 0 chr21 24395193 24395495 -20512075 + AluSg SINE Alu 1 302 -8 2129 76 0 8 chr21 24395836 24396100 -20511470 + AluSx SINE Alu 37 298 -14 449 270 163 20 chr21 24396553 24396749 -20510821 - MIR SINE MIR -37 225 2 908 137 27 0 chr21 24397685 24397831 -20509739 + LTR54 LTR ERV1 336 485 -25 420 55 0 0 chr21 24398100 24398155 -20509415 + (GA)n Simple_repeat Simple_repeat 1 55 0 243 79 0 0 chr21 24398156 24398194 -20509376 + (TG)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr21 24399325 24399346 -20508224 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 316 272 89 108 chr21 24401734 24402217 -20505353 + L1M2 LINE L1 973 1406 -5443 215 159 23 0 chr21 24402678 24402722 -20504848 + T-rich Low_complexity Low_complexity 3 47 0 287 234 234 12 chr21 24403352 24403519 -20504051 - MIR SINE MIR 0 262 59 770 177 11 97 chr21 24403671 24403742 -20503828 - MER45A DNA AcHobo -1411 170 94 2378 86 0 3 chr21 24403742 24404043 -20503527 + AluSx SINE Alu 1 300 -12 770 177 11 97 chr21 24404043 24404157 -20503413 - MER45A DNA AcHobo -1487 94 1 2278 31 0 0 chr21 24404193 24404451 -20503119 + AluY SINE Alu 37 294 -17 846 323 161 17 chr21 24404825 24405416 -20502154 - L3 LINE CR1 -52 1525 850 2271 125 22 17 chr21 24405476 24405837 -20501733 - MLT1B LTR MaLR -14 376 14 2068 162 55 39 chr21 24406146 24406529 -20501041 - MLT1B LTR MaLR 0 390 2 182 61 0 30 chr21 24408039 24408072 -20499498 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1480 182 12 0 chr21 24408075 24408317 -20499253 - AluJb SINE Alu -65 247 3 22 0 0 0 chr21 24408320 24408342 -20499228 + AT_rich Low_complexity Low_complexity 1 22 0 3970 143 62 3 chr21 24408962 24409596 -20497974 + LTR51 LTR ERV1 1 671 0 810 163 8 0 chr21 24409974 24410097 -20497473 + FLAM_C SINE Alu 4 127 -16 29 0 0 0 chr21 24410097 24410126 -20497444 + AT_rich Low_complexity Low_complexity 1 29 0 427 191 0 0 chr21 24410127 24410195 -20497375 + AluJ/FLAM SINE Alu 2 69 -243 1231 118 0 11 chr21 24410195 24410373 -20497197 + AluSg/x SINE Alu 135 310 0 2074 128 0 16 chr21 24410590 24410902 -20496668 - AluSx SINE Alu -5 307 1 1776 130 12 75 chr21 24411393 24411715 -20495855 - AluSq SINE Alu -11 302 1 2390 186 52 38 chr21 24412042 24412542 -20495028 - MLT2B2 LTR ERVL -8 507 1 374 308 0 28 chr21 24412733 24412876 -20494694 + MER103 DNA DNA 1 139 -27 1848 108 50 25 chr21 24412891 24413170 -20494400 - AluSx SINE Alu -2 310 25 994 102 44 0 chr21 24413177 24413314 -20494256 - AluSq/x SINE Alu -167 146 4 22 0 0 0 chr21 24413522 24413544 -20494026 + AT_rich Low_complexity Low_complexity 1 22 0 2829 138 23 21 chr21 24414390 24414456 -20493114 - MSTA LTR MaLR 0 428 364 1876 128 62 0 chr21 24414456 24414730 -20492840 + AluSx SINE Alu 1 291 -21 2829 138 23 21 chr21 24414730 24415090 -20492480 - MSTA LTR MaLR -64 364 1 10212 166 14 13 chr21 24415090 24416740 -20490830 - MSTA-int LTR MaLR 0 1651 1 2489 163 11 32 chr21 24416740 24417175 -20490395 - MSTB LTR MaLR 0 426 1 2390 82 0 13 chr21 24417384 24417699 -20489871 - AluY SINE Alu 0 311 1 180 0 0 0 chr21 24418289 24418309 -20489261 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1668 165 62 7 chr21 24418311 24418584 -20488986 - AluJb SINE Alu -24 288 1 393 279 91 30 chr21 24418648 24418813 -20488757 - MIR3 SINE MIR -1 207 33 620 356 78 30 chr21 24418950 24419385 -20488185 - L3 LINE CR1 -11 1566 1111 3094 257 75 44 chr21 24419444 24419819 -20487751 - L2 LINE L2 -123 3190 2828 2555 139 26 0 chr21 24419819 24420199 -20487371 + MLT1B LTR MaLR 1 390 0 3094 257 75 44 chr21 24420199 24420610 -20486960 - L2 LINE L2 -485 2828 2431 1193 73 33 0 chr21 24420610 24420761 -20486809 - L1PA11 LINE L1 0 6174 6019 3094 257 75 44 chr21 24420761 24420964 -20486606 - L2 LINE L2 -882 2431 2236 1851 150 4 0 chr21 24420964 24421237 -20486333 + AluSx SINE Alu 1 274 -38 3094 257 75 44 chr21 24421237 24421677 -20485893 - L2 LINE L2 -1077 2236 1728 1072 162 12 0 chr21 24421693 24421866 -20485704 - AluJb SINE Alu -13 299 125 515 122 0 14 chr21 24421869 24421943 -20485627 + AluJb SINE Alu 64 136 -176 721 168 0 0 chr21 24421943 24422050 -20485520 + U6 snRNA snRNA 1 107 0 1047 135 0 0 chr21 24422067 24422208 -20485362 + AluJb SINE Alu 120 260 -52 681 134 10 0 chr21 24422215 24422312 -20485258 - AluJ/FLAM SINE Alu -213 99 2 479 295 60 0 chr21 24422321 24422487 -20485083 - L2 LINE L2 -1611 1703 1528 756 217 29 17 chr21 24422518 24422578 -20484992 - MER3 DNA MER1_type -26 183 125 2018 117 13 36 chr21 24422578 24422887 -20484683 + AluSx SINE Alu 1 302 -10 756 217 29 17 chr21 24422887 24423001 -20484569 - MER3 DNA MER1_type -84 125 7 549 274 154 17 chr21 24423018 24423252 -20484318 - L2 LINE L2 -1814 1500 1235 1365 169 145 0 chr21 24423293 24423542 -20484028 - AluJb SINE Alu -27 285 1 1025 182 16 83 chr21 24423542 24423670 -20483900 + AluJo SINE Alu 19 154 -158 2466 83 0 0 chr21 24423670 24423972 -20483598 + AluY SINE Alu 1 302 -9 1025 182 16 83 chr21 24423972 24423987 -20483583 + AluJo SINE Alu 154 168 -144 1971 147 65 42 chr21 24423987 24424342 -20483228 - THE1B LTR MaLR 0 364 2 1025 182 16 83 chr21 24424342 24424450 -20483120 + AluJo SINE Alu 168 254 -58 21 0 0 0 chr21 24424464 24424485 -20483085 + AT_rich Low_complexity Low_complexity 1 21 0 388 259 45 27 chr21 24424485 24424597 -20482973 - L2 LINE L2 -2070 1244 1131 473 228 6 102 chr21 24424610 24424777 -20482793 - MER5B DNA MER1_type -1 177 27 1785 127 0 88 chr21 24424788 24425096 -20482474 - AluSx SINE Alu -11 301 21 712 267 92 4 chr21 24425110 24425372 -20482198 - L2 LINE L2 -2945 369 85 323 194 118 0 chr21 24425402 24425495 -20482075 - MER33 DNA MER1_type -39 285 182 552 183 0 107 chr21 24425537 24425668 -20481902 - FLAM_C SINE Alu -25 118 2 774 171 61 12 chr21 24425669 24425833 -20481737 - MER33 DNA MER1_type -131 193 22 272 292 199 32 chr21 24425959 24426175 -20481395 - L3 LINE CR1 -1059 518 267 288 300 87 61 chr21 24427034 24427264 -20480306 + MIR SINE MIR 21 256 -6 3012 161 50 19 chr21 24427532 24428072 -20479498 - L1MB8 LINE L1 -1 6177 5621 246 274 0 32 chr21 24428169 24428231 -20479339 - L2 LINE L2 -16 3297 3238 2278 98 0 0 chr21 24428451 24428736 -20478834 + AluSx SINE Alu 1 285 -27 474 75 0 0 chr21 24428736 24428803 -20478767 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1520 192 49 0 chr21 24428818 24428987 -20478583 - AluJo SINE Alu -9 303 113 180 0 0 0 chr21 24428987 24429007 -20478563 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1520 192 49 0 chr21 24429007 24429124 -20478446 - AluJo SINE Alu -199 113 3 272 250 12 24 chr21 24429532 24429616 -20477954 + MIR SINE MIR 67 149 -113 2355 93 0 0 chr21 24429698 24429998 -20477572 - AluY SINE Alu -9 302 3 608 218 14 14 chr21 24430092 24430234 -20477336 - LTR16A1 LTR ERVL -1 456 315 288 299 11 0 chr21 24430908 24430995 -20476575 - L2 LINE L2 0 3272 3185 645 220 0 0 chr21 24431876 24431994 -20475576 - FLAM_A SINE Alu -15 118 1 2021 153 10 0 chr21 24432029 24432337 -20475233 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr21 24432638 24432689 -20474881 + AT_rich Low_complexity Low_complexity 1 51 0 225 355 36 0 chr21 24433349 24433459 -20474111 - MIR3 SINE MIR -33 175 62 35 24 0 0 chr21 24433738 24433780 -20473790 + AT_rich Low_complexity Low_complexity 1 42 0 1706 252 135 5 chr21 24434356 24434932 -20472638 - L1MC4 LINE L1 -154 7888 7238 2358 116 0 0 chr21 24434973 24435284 -20472286 - AluSq SINE Alu -2 311 1 1907 251 87 9 chr21 24435286 24435851 -20471719 - L1MC4 LINE L1 -966 7076 6468 2268 84 0 39 chr21 24435995 24436303 -20471267 - AluY SINE Alu -15 296 1 2521 190 55 21 chr21 24436517 24437030 -20470540 + MLT2B3 LTR ERVL 1 412 -32 772 237 43 16 chr21 24437028 24437214 -20470356 + MER41C LTR ERV1 8 198 -356 * 1268 210 63 4 chr21 24437214 24437466 -20470104 + AluJb SINE Alu 1 267 -45 807 216 53 55 chr21 24437495 24437837 -20469733 + MER41D LTR ERV1 212 557 0 258 75 75 113 chr21 24437846 24437899 -20469671 + MLT2B3 LTR ERVL 504 554 0 262 279 0 0 chr21 24438505 24438566 -20469004 + MIR SINE MIR 34 94 -168 38 39 0 0 chr21 24439602 24439654 -20467916 + AT_rich Low_complexity Low_complexity 1 52 0 2238 120 0 7 chr21 24439654 24439955 -20467615 - AluSx SINE Alu -13 299 1 4043 175 16 44 chr21 24440257 24440451 -20467119 - MER72 LTR ERV1 0 722 524 1817 115 0 4 chr21 24440451 24440721 -20466849 - AluSx SINE Alu 0 308 40 1966 133 7 0 chr21 24440725 24441010 -20466560 - AluSx SINE Alu -21 291 5 4043 175 16 44 chr21 24441010 24441552 -20466018 - MER72 LTR ERV1 -201 521 1 681 283 95 54 chr21 24441626 24441994 -20465576 - LTR16C LTR ERVL 0 491 109 3179 123 47 56 chr21 24442222 24442656 -20464914 + MER34C LTR ERV1 37 466 -119 2801 72 12 0 chr21 24442656 24443002 -20464568 + L1PA6 LINE L1 5799 6148 -6 3179 123 47 56 chr21 24443002 24443121 -20464449 + MER34C LTR ERV1 466 585 0 2454 138 12 22 chr21 24443430 24443830 -20463740 - MER61B LTR ERV1 -29 396 1 1696 186 7 14 chr21 24444549 24444845 -20462725 - AluJo SINE Alu -18 294 1 1994 109 0 4 chr21 24444957 24445231 -20462339 + AluSx SINE Alu 1 273 -39 213 39 0 0 chr21 24445240 24445266 -20462304 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 180 0 0 0 chr21 24445270 24445290 -20462280 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 1815 116 3 69 chr21 24445949 24446276 -20461294 - AluSx SINE Alu 0 307 1 25 31 0 0 chr21 24446286 24446318 -20461252 + AT_rich Low_complexity Low_complexity 1 32 0 2567 60 0 0 chr21 24446412 24446713 -20460857 + AluY SINE Alu 1 301 -10 556 213 44 66 chr21 24446727 24446910 -20460660 - L1MC5 LINE L1 -48 7913 7735 911 164 6 30 chr21 24446912 24447077 -20460493 - FRAM SINE Alu -5 171 11 265 240 57 62 chr21 24447573 24447728 -20459842 + LTR31 LTR ERV1 463 610 -9 288 320 54 44 chr21 24448194 24448307 -20459263 + MIR SINE MIR 47 157 -105 2481 120 19 25 chr21 24448307 24448673 -20458897 + THE1B LTR MaLR 1 364 0 12625 89 6 1 chr21 24448673 24450244 -20457326 + THE1B-int LTR MaLR 1 1579 -1 2370 134 19 25 chr21 24450245 24450611 -20456959 + THE1B LTR MaLR 1 364 0 288 320 54 44 chr21 24450611 24450697 -20456873 + MIR SINE MIR 156 251 -11 1331 114 8 88 chr21 24450753 24451015 -20456555 - L1MC2 LINE L1 -20 6324 6084 1470 221 66 63 chr21 24451015 24451379 -20456191 + MER34 LTR ERV1 1 353 -189 2250 128 50 36 chr21 24451379 24451738 -20455832 - THE1B LTR MaLR 0 364 1 1470 221 66 63 chr21 24451738 24451929 -20455641 + MER34 LTR ERV1 353 542 0 1121 200 32 6 chr21 24451933 24452172 -20455398 - L1MC2 LINE L1 -110 6052 5825 205 316 206 22 chr21 24452380 24452516 -20455054 + MER5A DNA MER1_type 1 161 -28 552 309 37 34 chr21 24452597 24452895 -20454675 - L2 LINE L2 -1 3312 3014 221 341 12 0 chr21 24453344 24453429 -20454141 - MIR SINE MIR -70 192 107 1779 134 26 22 chr21 24453593 24453937 -20453633 - MER4A LTR ERV1 0 664 261 524 133 0 12 chr21 24453937 24454020 -20453550 - MER4A LTR ERV1 -566 98 17 2225 114 0 0 chr21 24454021 24454318 -20453252 - AluSx SINE Alu -2 310 14 1710 146 68 4 chr21 24455374 24455654 -20451916 + AluJb SINE Alu 1 298 -14 376 342 8 8 chr21 24456560 24456677 -20450893 + MER5A DNA MER1_type 57 173 -16 21 36 0 0 chr21 24457215 24457243 -20450327 + AT_rich Low_complexity Low_complexity 1 28 0 321 298 39 10 chr21 24457366 24457470 -20450100 + MIR SINE MIR 59 165 -97 2062 84 92 7 chr21 24457488 24457772 -20449798 + AluY SINE Alu 1 308 -3 837 215 0 0 chr21 24457793 24458008 -20449562 + FRAM SINE Alu 9 223 0 302 248 95 0 chr21 24458008 24458113 -20449457 + L1M4 LINE L1 3073 3187 -2959 2882 64 116 15 chr21 24459115 24459521 -20448049 - LTR7 LTR ERV1 -2 448 2 2251 91 81 24 chr21 24459522 24459894 -20447676 - HERVH LTR ERV1 0 7713 7321 1343 113 42 9 chr21 24459891 24460104 -20447466 - HERVH LTR ERV1 -1894 5819 5600 * 4087 143 42 2 chr21 24460105 24460741 -20446829 - HERVH LTR ERV1 -2564 5149 4488 5359 115 8 35 chr21 24460743 24461621 -20445949 - HERVH LTR ERV1 -3720 3993 3140 * 15190 97 14 24 chr21 24461607 24464315 -20443255 - HERVH LTR ERV1 -4721 2992 2 2811 74 119 10 chr21 24464324 24464728 -20442842 - LTR7 LTR ERV1 -2 448 1 184 256 26 0 chr21 24464882 24464921 -20442649 - L2 LINE L2 -20 3252 3213 188 186 286 0 chr21 24467885 24467955 -20439615 + MER5C DNA MER1_type 36 125 -199 204 329 0 13 chr21 24469509 24469585 -20437985 + (TG)n Simple_repeat Simple_repeat 1 75 0 790 204 0 0 chr21 24470305 24470437 -20437133 - FLAM_C SINE Alu -5 138 7 24 53 0 0 chr21 24470437 24470475 -20437095 + AT_rich Low_complexity Low_complexity 1 38 0 313 324 9 0 chr21 24471116 24471221 -20436349 + MIR3 SINE MIR 99 204 -4 213 262 167 0 chr21 24471673 24471767 -20435803 + MIR SINE MIR 15 115 -93 1399 164 44 60 chr21 24472179 24472341 -20435229 - L1MB8 LINE L1 -5 6173 6010 2329 46 16 29 chr21 24472341 24472647 -20434923 - AluY SINE Alu -9 302 1 1399 164 44 60 chr21 24472647 24472851 -20434719 - L1MB8 LINE L1 -168 6010 5813 3846 188 43 19 chr21 24472875 24473816 -20433754 - L1MB3 LINE L1 0 6183 5211 1994 179 49 0 chr21 24473821 24474251 -20433319 + L1 LINE L1 4573 5023 -1123 856 79 8 0 chr21 24474247 24474373 -20433197 - L1M4 LINE L1 -698 5486 5360 * 295 264 145 47 chr21 24474373 24474566 -20433004 + L1MC/D LINE L1 5525 5736 -2072 3261 129 4 17 chr21 24474685 24474874 -20432696 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2192 107 13 0 chr21 24474874 24475174 -20432396 - AluSx SINE Alu -8 304 1 3261 129 4 17 chr21 24475174 24475519 -20432051 - Tigger4(Zombi) DNA MER2_type -190 2541 2204 711 177 0 0 chr21 24475514 24475638 -20431932 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 1535 148 194 22 chr21 24476364 24476566 -20431004 + MSTA LTR MaLR 1 167 -261 4256 98 32 7 chr21 24476566 24477185 -20430385 + MER41B LTR ERV1 1 635 0 1535 148 194 22 chr21 24477185 24477347 -20430223 + MSTA LTR MaLR 167 428 0 289 214 0 0 chr21 24477534 24477590 -20429980 + L2 LINE L2 3217 3272 0 2284 101 0 3 chr21 24477679 24477975 -20429595 + AluSq SINE Alu 1 295 -18 240 213 33 0 chr21 24478105 24478166 -20429404 + (CA)n Simple_repeat Simple_repeat 2 64 0 301 301 90 24 chr21 24478238 24478404 -20429166 - L1ME4a LINE L1 -2 6119 5943 637 266 71 34 chr21 24478654 24479064 -20428506 - HAL1 LINE L1 -63 2444 2020 1151 236 23 81 chr21 24479462 24479708 -20427862 - HAL1 LINE L1 -494 2013 1754 726 194 69 63 chr21 24479708 24479807 -20427763 + MER45A DNA AcHobo 2 104 -1477 2244 113 0 7 chr21 24479807 24480116 -20427454 + AluSx SINE Alu 1 307 -5 726 194 69 63 chr21 24480116 24480191 -20427379 + MER45A DNA AcHobo 104 177 -1 1151 236 23 81 chr21 24480191 24480355 -20427215 - HAL1 LINE L1 -753 1754 1633 2293 72 7 0 chr21 24480355 24480660 -20426910 - L1PA8 LINE L1 0 6172 5866 1151 236 23 81 chr21 24480660 24480731 -20426839 - HAL1 LINE L1 -874 1633 1559 702 123 0 0 chr21 24480733 24480839 -20426731 - AluSg/x SINE Alu -4 308 203 464 184 18 18 chr21 24480849 24480963 -20426607 - HAL1 LINE L1 -952 1555 1442 323 276 123 25 chr21 24480949 24481112 -20426458 - HAL1 LINE L1 -2319 188 10 * 1119 149 0 0 chr21 24481238 24481399 -20426171 + AluSg/x SINE Alu 145 305 -7 411 239 38 69 chr21 24483465 24483624 -20423946 - LTR33 LTR ERVL -320 201 48 264 308 96 19 chr21 24483803 24483907 -20423663 + L2 LINE L2 3160 3271 -1 2256 88 0 0 chr21 24483967 24484252 -20423318 + AluSc SINE Alu 17 301 -8 236 295 22 56 chr21 24484530 24484713 -20422857 + MIR SINE MIR 40 215 -47 21 0 0 0 chr21 24486071 24486092 -20421478 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr21 24486223 24486250 -20421320 + AT_rich Low_complexity Low_complexity 1 27 0 1810 155 44 12 chr21 24486494 24486835 -20420735 - MLT1A1 LTR MaLR -13 352 1 355 246 117 71 chr21 24487004 24487285 -20420285 - L1ME4a LINE L1 -306 5815 5522 2328 93 6 19 chr21 24487287 24487600 -20419970 - AluSx SINE Alu -1 311 3 2373 100 0 0 chr21 24487708 24488008 -20419562 + AluSx SINE Alu 1 300 -12 749 226 68 0 chr21 24488086 24488263 -20419307 + MER5A DNA MER1_type 1 189 0 496 279 80 52 chr21 24488555 24489001 -20418569 - L1ME4a LINE L1 -710 5454 4999 376 252 165 61 chr21 24489056 24489401 -20418169 - L1ME4a LINE L1 -1534 4612 4232 1871 138 118 67 chr21 24489405 24489811 -20417759 + MSTA LTR MaLR 2 428 0 2113 78 57 3 chr21 24489942 24490225 -20417345 + AluY SINE Alu 1 298 -13 4340 221 53 60 chr21 24490235 24490728 -20416842 - L1ME1 LINE L1 -5 6161 5666 2423 77 3 0 chr21 24490728 24491026 -20416544 + AluSc SINE Alu 1 299 -10 4340 221 53 60 chr21 24491026 24491142 -20416428 - L1ME1 LINE L1 -500 5666 5551 1025 208 39 105 chr21 24491142 24491531 -20416039 + MLT1A1 LTR MaLR 1 363 -2 4340 221 53 60 chr21 24491531 24492793 -20414777 - L1ME1 LINE L1 -615 5551 4282 243 0 0 0 chr21 24492793 24492820 -20414750 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4340 221 53 60 chr21 24492820 24493050 -20414520 - L1ME1 LINE L1 -1884 4282 4052 2128 110 0 3 chr21 24493050 24493341 -20414229 - AluSg SINE Alu -20 290 1 4340 221 53 60 chr21 24493341 24493682 -20413888 - L1ME1 LINE L1 -2114 4052 3669 2293 236 58 34 chr21 24494750 24495884 -20411686 + L1MDb LINE L1 775 1922 -4484 285 245 50 63 chr21 24496021 24496180 -20411390 - HAL1b LINE L1 -599 749 593 435 272 81 51 chr21 24496203 24496587 -20410983 - HAL1b LINE L1 -900 448 48 2498 49 0 13 chr21 24496587 24496891 -20410679 - AluY SINE Alu -10 301 2 435 272 81 51 chr21 24496891 24496940 -20410630 - HAL1b LINE L1 -1300 48 2 239 190 89 0 chr21 24497921 24498000 -20409570 + (TATTG)n Simple_repeat Simple_repeat 3 88 0 359 351 96 0 chr21 24498051 24498302 -20409268 - L1MC/D LINE L1 -2099 5709 5435 307 238 191 16 chr21 24498783 24498909 -20408661 - L1MC/D LINE L1 -1328 4818 4671 236 329 74 16 chr21 24498924 24498980 -20408590 - L1MC/D LINE L1 -1537 4609 4558 3904 176 48 20 chr21 24498980 24499743 -20407827 - LTR1 LTR ERV1 0 785 1 236 329 74 16 chr21 24499743 24500118 -20407452 - L1MC/D LINE L1 -1588 4558 4153 319 269 92 88 chr21 24501049 24501309 -20406261 - L1ME4a LINE L1 -21 6100 5840 25 51 0 0 chr21 24501443 24501482 -20406088 + AT_rich Low_complexity Low_complexity 1 39 0 332 245 43 0 chr21 24501483 24501577 -20405993 - L1ME2 LINE L1 -27 6137 6040 207 0 0 0 chr21 24501590 24501613 -20405957 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1671 148 63 11 chr21 24501613 24501883 -20405687 - AluJo SINE Alu -28 284 1 287 240 40 0 chr21 24501993 24502068 -20405502 - L1ME2 LINE L1 -2213 5595 5518 201 74 0 0 chr21 24502192 24502219 -20405351 + (TG)n Simple_repeat Simple_repeat 2 28 0 753 307 66 31 chr21 24502678 24503341 -20404229 + L1M3d LINE L1 566 1073 -5580 320 299 9 28 chr21 24503451 24503558 -20404012 + L1MA7 LINE L1 266 370 -6283 279 273 0 15 chr21 24503676 24503742 -20403828 + L1MA7 LINE L1 280 344 -6309 5101 249 32 19 chr21 24503799 24506341 -20401229 + L1MA7 LINE L1 943 3205 -3527 1671 204 0 7 chr21 24506341 24506645 -20400925 - AluJb SINE Alu -10 302 1 5101 249 32 19 chr21 24506645 24507086 -20400484 + L1MA7 LINE L1 3205 3639 -3093 4401 171 47 12 chr21 24507080 24508418 -20399152 + L1MA7 LINE L1 5492 6873 -4 * 25 0 0 0 chr21 24508852 24508877 -20398693 + AT_rich Low_complexity Low_complexity 1 25 0 253 294 35 0 chr21 24510632 24510717 -20396853 - MIR SINE MIR -70 192 105 2148 110 0 17 chr21 24510742 24511043 -20396527 + AluSc SINE Alu 1 296 -13 189 0 0 0 chr21 24511801 24511822 -20395748 + (A)n Simple_repeat Simple_repeat 1 21 0 255 247 163 102 chr21 24512500 24512666 -20394904 + MIR3 SINE MIR 16 191 -17 445 206 127 16 chr21 24512693 24512819 -20394751 - Charlie2a DNA MER1_type -6 2856 2717 833 198 50 0 chr21 24512832 24513014 -20394556 - Charlie2a DNA MER1_type -1204 1658 1468 947 261 16 52 chr21 24513101 24513465 -20394105 - Charlie2a DNA MER1_type -2477 385 35 325 255 193 14 chr21 24513805 24513950 -20393620 + MIR SINE MIR 3 173 -89 388 326 7 0 chr21 24514275 24514410 -20393160 - HERV16 LTR ERVL -3161 1835 1700 727 263 4 46 chr21 24514526 24514788 -20392782 - HERV16 LTR ERVL -3862 1134 884 903 288 46 3 chr21 24514847 24515173 -20392397 - HERV16 LTR ERVL -4656 340 1 655 276 24 76 chr21 24515179 24515246 -20392324 - LTR16A LTR ERVL -6 444 375 2527 56 0 13 chr21 24515246 24515552 -20392018 + AluY SINE Alu 1 302 -9 655 276 24 76 chr21 24515552 24515853 -20391717 - LTR16A LTR ERVL -75 375 95 2540 46 7 0 chr21 24516326 24516630 -20390940 + AluY SINE Alu 1 306 -5 2183 81 0 65 chr21 24517863 24518184 -20389386 - AluY SINE Alu -11 300 1 2485 63 0 3 chr21 24518664 24518964 -20388606 - AluY SINE Alu -12 299 1 428 235 0 0 chr21 24519525 24519610 -20387960 + MER20 DNA MER1_type 2 86 -133 1057 257 72 0 chr21 24519661 24519926 -20387644 - MLT1G1 LTR MaLR -307 288 5 23 0 0 0 chr21 24520103 24520126 -20387444 + AT_rich Low_complexity Low_complexity 1 23 0 780 129 0 0 chr21 24520184 24520331 -20387239 + (TATG)n Simple_repeat Simple_repeat 2 148 0 2008 141 0 43 chr21 24520760 24521086 -20386484 - AluJb SINE Alu 0 312 1 1413 268 34 15 chr21 24521451 24521862 -20385708 - LTR16A LTR ERVL 0 450 32 468 201 129 82 chr21 24522464 24522658 -20384912 + MIR SINE MIR 1 203 -59 314 264 33 16 chr21 24522967 24523088 -20384482 - MIR SINE MIR -17 245 123 22 35 0 0 chr21 24524313 24524342 -20383228 + AT_rich Low_complexity Low_complexity 1 29 0 292 320 57 25 chr21 24525327 24525449 -20382121 + MLT1K LTR MaLR 123 248 -340 246 158 50 40 chr21 24525709 24525810 -20381760 + (TTATA)n Simple_repeat Simple_repeat 3 104 0 436 261 33 7 chr21 24526070 24526223 -20381347 - L1MD3 LINE L1 -10 7985 7829 563 39 13 0 chr21 24526232 24526310 -20381260 + (TTATA)n Simple_repeat Simple_repeat 2 80 0 2137 108 0 3 chr21 24526310 24526597 -20380973 - AluSx SINE Alu -26 286 1 232 130 0 101 chr21 24526706 24526775 -20380795 + L1MCa LINE L1 2006 2067 -4359 21 0 0 0 chr21 24526899 24526920 -20380650 + AT_rich Low_complexity Low_complexity 1 21 0 265 157 0 0 chr21 24526920 24526971 -20380599 - L1MA4 LINE L1 -3 6297 6247 * 1584 164 25 50 chr21 24526967 24527321 -20380249 - L1M2 LINE L1 -4692 2157 1813 2091 148 0 0 chr21 24527321 24527625 -20379945 - AluSx SINE Alu -6 306 3 1584 164 25 50 chr21 24527625 24527672 -20379898 - L1M2 LINE L1 -5036 1813 1766 * 2373 155 30 4 chr21 24527659 24528195 -20379375 - L1PA16 LINE L1 -501 5664 5104 3191 127 6 20 chr21 24528201 24528706 -20378864 + L1PA16 LINE L1 5660 6157 -9 34 24 0 0 chr21 24528744 24528785 -20378785 + AT_rich Low_complexity Low_complexity 1 41 0 3194 240 37 19 chr21 24528788 24530060 -20377510 - L1ME1 LINE L1 -27 6139 4847 * 3200 166 64 53 chr21 24530031 24530596 -20376974 + L1MC1 LINE L1 5164 5739 -594 2087 109 21 0 chr21 24530596 24530879 -20376691 - AluSx SINE Alu -19 293 5 3200 166 64 53 chr21 24530879 24531176 -20376394 + L1MC1 LINE L1 5739 6031 -302 301 186 20 118 chr21 24531179 24531246 -20376324 - L1ME1 LINE L1 -1286 4860 4805 2116 125 10 13 chr21 24531246 24531559 -20376011 - AluSx SINE Alu 0 312 1 301 186 20 118 chr21 24531559 24531593 -20375977 - L1ME1 LINE L1 -1341 4805 4769 2462 190 80 16 chr21 24531656 24531830 -20375740 - Tigger6a DNA MER2_type -927 670 509 2179 121 134 13 chr21 24531830 24532210 -20375360 - MSTA LTR MaLR 0 428 3 2462 190 80 16 chr21 24532210 24532582 -20374988 - Tigger6a DNA MER2_type -1088 509 89 2111 131 76 15 chr21 24532586 24532929 -20374641 + THE1B LTR MaLR 1 364 0 250 164 0 0 chr21 24532929 24532978 -20374592 + L1P LINE L1 2977 3025 -3121 632 209 8 0 chr21 24533024 24533153 -20374417 + Tigger6 DNA MER2_type 14 143 -1454 1037 87 20 0 chr21 24533155 24533304 -20374266 - THE1B-int LTR MaLR -1428 152 1 2019 125 36 16 chr21 24533304 24533607 -20373963 - THE1B LTR MaLR 0 364 56 2443 263 35 10 chr21 24533617 24534660 -20372910 - L1MDa LINE L1 -3164 3376 2305 421 322 42 0 chr21 24535295 24535438 -20372132 - MIR SINE MIR -112 150 2 228 224 17 0 chr21 24535522 24535580 -20371990 + (TG)n Simple_repeat Simple_repeat 2 60 0 3224 238 64 8 chr21 24536915 24537793 -20369777 + L1PB1 LINE L1 6 932 -5931 * 13906 198 28 8 chr21 24537789 24541253 -20366317 + L1PB1 LINE L1 1568 5183 -1684 219 36 0 0 chr21 24541253 24541281 -20366289 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 13906 198 28 8 chr21 24541281 24542618 -20364952 + L1PB1 LINE L1 5183 6491 -376 254 279 47 0 chr21 24542706 24542792 -20364778 - L1MC4 LINE L1 -1339 6703 6614 246 291 47 0 chr21 24542750 24542836 -20364734 + L1MC4 LINE L1 6614 6703 -1339 * 549 180 58 12 chr21 24542875 24543047 -20364523 + (CATA)n Simple_repeat Simple_repeat 1 180 0 274 233 47 0 chr21 24543048 24543134 -20364436 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr21 24543149 24543174 -20364396 + (TG)n Simple_repeat Simple_repeat 2 26 0 2251 148 0 5 chr21 24543187 24543558 -20364012 + L1PB1 LINE L1 6498 6866 -1 384 302 108 0 chr21 24543693 24543822 -20363748 - MLT1I LTR MaLR -6 403 261 398 310 46 35 chr21 24543949 24544123 -20363447 + MIR3 SINE MIR 23 198 -10 2081 136 24 63 chr21 24544210 24544636 -20362934 + L1MA3 LINE L1 5895 6303 -2 2114 118 0 7 chr21 24544755 24545051 -20362519 + AluSg SINE Alu 1 294 -16 2304 85 3 0 chr21 24546167 24546461 -20361109 - AluSp SINE Alu -18 295 1 2901 59 83 29 chr21 24548016 24548358 -20359212 - L1PA5 LINE L1 -1 6153 5782 2360 97 0 0 chr21 24548358 24548666 -20358904 - AluY SINE Alu -3 308 1 2901 59 83 29 chr21 24548666 24548744 -20358826 - L1PA5 LINE L1 -372 5782 5710 1216 104 27 32 chr21 24549244 24549465 -20358105 - L1MA7 LINE L1 -6 6285 6066 274 56 0 0 chr21 24549465 24549501 -20358069 + L1MA7 LINE L1 6032 6067 -224 2509 62 0 0 chr21 24550520 24550824 -20356746 + AluY SINE Alu 1 304 -7 527 244 106 84 chr21 24551050 24551562 -20356008 - L1ME4a LINE L1 -70 6051 5529 745 327 51 10 chr21 24552156 24552468 -20355102 + LTR16C LTR ERVL 167 491 0 2948 281 49 62 chr21 24552532 24553120 -20354450 - L2 LINE L2 -1 3312 2718 1319 94 65 37 chr21 24553120 24553142 -20354428 - L1MA4 LINE L1 -11 6289 6269 2204 97 3 0 chr21 24553142 24553431 -20354139 + AluSc SINE Alu 1 290 -19 1319 94 65 37 chr21 24553431 24553653 -20353917 - L1MA4 LINE L1 -31 6269 6038 2948 281 49 62 chr21 24553653 24554261 -20353309 - L2 LINE L2 -595 2718 2133 2032 170 8 20 chr21 24554261 24554656 -20352914 - MLT1B LTR MaLR 0 390 1 2948 281 49 62 chr21 24554656 24555014 -20352556 - L2 LINE L2 -1180 2133 1772 302 270 16 0 chr21 24555166 24555229 -20352341 + MLT1D LTR MaLR 1 64 -441 247 235 0 29 chr21 24555398 24555466 -20352104 + LTR67 LTR ERVL 457 522 -35 1897 230 75 25 chr21 24555584 24556101 -20351469 + MLT2B3 LTR ERVL 1 543 -11 1741 166 7 3 chr21 24556194 24556484 -20351086 + AluJo SINE Alu 4 294 -18 497 240 116 113 chr21 24556731 24557094 -20350476 - MLT1H LTR MaLR -18 531 168 333 283 66 0 chr21 24557099 24557205 -20350365 + LTR16A LTR ERVL 230 342 -108 435 237 64 35 chr21 24557823 24557996 -20349574 - L2 LINE L2 -109 3204 3027 546 326 37 12 chr21 24558209 24558451 -20349119 + L2 LINE L2 3023 3270 -43 1846 164 3 7 chr21 24558818 24559116 -20348454 + AluJo SINE Alu 6 302 -10 7199 53 0 0 chr21 24559315 24560403 -20347167 - L1PA6 LINE L1 -1 6153 5065 1760 158 11 49 chr21 24560717 24561066 -20346504 - MLT1B LTR MaLR -54 336 1 24 0 0 0 chr21 24561751 24561775 -20345795 + AT_rich Low_complexity Low_complexity 1 24 0 2135 105 7 0 chr21 24561775 24562060 -20345510 - AluSx SINE Alu -25 287 1 318 305 42 72 chr21 24562060 24562118 -20345452 - MIR SINE MIR -99 163 105 2023 189 8 8 chr21 24562118 24562483 -20345087 - MLT1A1 LTR MaLR 0 365 1 318 305 42 72 chr21 24562483 24562591 -20344979 - MIR SINE MIR -157 105 2 23 0 0 0 chr21 24562910 24562933 -20344637 + AT_rich Low_complexity Low_complexity 1 23 0 22419 151 28 18 chr21 24563470 24565727 -20341843 + L1MA3 LINE L1 10 2242 -5482 1980 145 0 0 chr21 24565727 24566037 -20341533 + AluSx SINE Alu 1 310 0 22419 151 28 18 chr21 24566037 24566102 -20341468 + L1MA3 LINE L1 2242 2305 -5419 1888 132 45 60 chr21 24566102 24566244 -20341326 - L1MA3 LINE L1 0 6305 6162 396 0 0 0 chr21 24566244 24566288 -20341282 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1928 104 0 70 chr21 24566288 24566587 -20340983 - AluY SINE Alu -31 280 3 1888 132 45 60 chr21 24566587 24566844 -20340726 - L1MA3 LINE L1 -141 6164 5911 22419 151 28 18 chr21 24566844 24567235 -20340335 + L1MA3 LINE L1 2305 2690 -5034 2340 115 0 3 chr21 24567235 24567548 -20340022 + AluSx SINE Alu 1 312 0 22419 151 28 18 chr21 24567548 24571860 -20335710 + L1MA3 LINE L1 2690 7118 -606 4948 159 0 2 chr21 24571877 24572738 -20334832 - L1PA15 LINE L1 -4 6161 5303 1227 131 0 19 chr21 24572738 24572950 -20334620 + L1MA3 LINE L1 7515 7724 0 28 79 0 0 chr21 24573009 24573072 -20334498 + AT_rich Low_complexity Low_complexity 1 63 0 1030 257 62 38 chr21 24573697 24574148 -20333422 + MLT1C LTR MaLR 6 467 0 248 250 28 56 chr21 24574416 24574524 -20333046 - L1ME3 LINE L1 -64 6098 5994 982 172 0 0 chr21 24574566 24574711 -20332859 + AluJb SINE Alu 124 268 -44 216 0 0 0 chr21 24574737 24574761 -20332809 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1637 241 35 16 chr21 24574781 24575417 -20332153 - L1ME3 LINE L1 -248 5922 5288 26 64 0 0 chr21 24576290 24576337 -20331233 + AT_rich Low_complexity Low_complexity 1 47 0 1570 160 47 4 chr21 24579914 24580170 -20327400 - AluJb SINE Alu -9 303 37 2219 123 22 25 chr21 24581570 24581935 -20325635 + THE1B LTR MaLR 1 364 0 511 273 106 15 chr21 24582327 24582525 -20325045 - MER20 DNA MER1_type -3 216 1 270 95 0 0 chr21 24583214 24583256 -20324314 + (GA)n Simple_repeat Simple_repeat 2 43 0 518 332 99 9 chr21 24583281 24583513 -20324057 - MLT1I LTR MaLR -62 347 95 26 0 0 0 chr21 24583797 24583823 -20323747 + AT_rich Low_complexity Low_complexity 1 26 0 400 93 58 70 chr21 24584014 24584100 -20323470 + THE1C LTR MaLR 208 292 -83 697 216 48 53 chr21 24584100 24584308 -20323262 - MLT1A2 LTR MaLR -78 296 90 744 225 43 21 chr21 24584846 24585033 -20322537 + MER20 DNA MER1_type 29 219 0 180 200 0 80 chr21 24585239 24585256 -20322314 - MIR3 SINE MIR -8 200 155 193 182 0 0 chr21 24585256 24585289 -20322281 - L3 LINE CR1 -17 1560 1528 2803 174 42 21 chr21 24585370 24586325 -20321245 + L1MC3 LINE L1 6654 7671 -114 1906 155 19 48 chr21 24586325 24586700 -20320870 - THE1B LTR MaLR 0 364 1 2803 174 42 21 chr21 24586700 24586791 -20320779 + L1MC3 LINE L1 7671 7759 -26 198 293 76 76 chr21 24586953 24587110 -20320460 - MIR3 SINE MIR -48 160 4 261 0 0 0 chr21 24587380 24587409 -20320161 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 311 198 36 54 chr21 24587979 24588090 -20319480 - MIR SINE MIR -45 217 109 404 322 79 20 chr21 24588308 24588510 -20319060 + L2 LINE L2 3100 3313 0 1522 184 88 59 chr21 24588921 24589362 -20318208 + MLT1C LTR MaLR 1 454 -13 5589 24 0 0 chr21 24590021 24590746 -20316824 - L1P LINE L1 -728 5427 4703 3148 29 0 18 chr21 24590746 24591128 -20316442 + L1PA3 LINE L1 5777 6154 -1 30 0 0 0 chr21 24591128 24591158 -20316412 + AT_rich Low_complexity Low_complexity 1 30 0 5445 90 0 1 chr21 24591406 24592158 -20315412 + L1PA13 LINE L1 5413 6163 0 484 301 16 44 chr21 24593169 24593352 -20314218 - MER5B DNA MER1_type 0 178 1 200 343 113 25 chr21 24593352 24593587 -20313983 - L2 LINE L2 -52 3261 3006 1987 112 42 7 chr21 24595224 24595510 -20312060 - AluSg SINE Alu -14 296 1 207 0 0 0 chr21 24595572 24595595 -20311975 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 238 255 0 0 chr21 24595991 24596042 -20311528 - Tigger4(Zombi) DNA MER2_type -2582 149 99 * 927 162 70 0 chr21 24596000 24596185 -20311385 + MER46B DNA MER2_type 5 77 -159 841 117 0 7 chr21 24596192 24596337 -20311233 + Tigger4(Zombi) DNA MER2_type 133 2646 -85 375 105 0 0 chr21 24596663 24596720 -20310850 - Alu SINE Alu -3 299 243 * 1498 181 24 7 chr21 24596719 24597017 -20310553 - MER7A DNA MER2_type -45 301 1 554 102 0 11 chr21 24597017 24597103 -20310467 + Tigger4(Zombi) DNA MER2_type 2645 2729 -2 216 312 134 35 chr21 24597232 24597463 -20310107 + L2 LINE L2 859 1112 -2202 * 563 229 46 39 chr21 24597426 24597579 -20309991 + MIR SINE MIR 108 261 -1 1612 246 50 18 chr21 24597857 24598362 -20309208 - MLT1F LTR MaLR 0 542 22 2112 132 24 0 chr21 24598650 24598939 -20308631 + AluSx SINE Alu 1 296 -16 187 234 0 21 chr21 24599616 24599663 -20307907 - L2 LINE L2 0 3313 3268 559 303 121 28 chr21 24599973 24600336 -20307234 + MLT1J LTR MaLR 115 511 0 213 150 0 25 chr21 24600438 24600478 -20307092 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 2258 101 0 3 chr21 24600941 24601229 -20306341 - AluSg SINE Alu -23 287 1 1240 158 75 2 chr21 24601951 24602347 -20305223 + MLT2B2 LTR ERVL 1 515 0 30 0 0 0 chr21 24602783 24602813 -20304757 + AT_rich Low_complexity Low_complexity 1 30 0 2543 68 0 0 chr21 24603021 24603329 -20304241 - AluY SINE Alu -3 308 1 1531 148 87 29 chr21 24603524 24603835 -20303735 - THE1B LTR MaLR -35 329 1 22 0 0 0 chr21 24604505 24604527 -20303043 + AT_rich Low_complexity Low_complexity 1 22 0 6973 62 2 3 chr21 24604565 24605877 -20301693 - L1PA7 LINE L1 -1 6153 4840 383 344 31 0 chr21 24606179 24606307 -20301263 - L2 LINE L2 -5 3267 3136 183 80 0 0 chr21 24607389 24607414 -20300156 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 395 287 18 18 chr21 24607428 24607595 -20299975 - L2 LINE L2 -2348 966 800 1128 252 205 16 chr21 24607760 24607965 -20299605 - L2 LINE L2 -2513 801 636 2402 137 16 10 chr21 24607965 24608353 -20299217 - MLT1B LTR MaLR 0 390 1 1128 252 205 16 chr21 24608353 24608572 -20298998 - L2 LINE L2 -2678 636 297 401 290 174 40 chr21 24609216 24609544 -20298026 + L2 LINE L2 2942 3313 0 1388 201 3 32 chr21 24610104 24610282 -20297288 - Tigger1 DNA MER2_type 0 2418 2251 2155 126 3 26 chr21 24610282 24610592 -20296978 + AluSx SINE Alu 1 303 -9 1388 201 3 32 chr21 24610592 24610722 -20296848 - Tigger1 DNA MER2_type -167 2251 2119 * 4237 146 30 5 chr21 24610701 24611436 -20296134 - Tigger1 DNA MER2_type -1665 753 1 21 0 0 0 chr21 24612610 24612631 -20294939 + AT_rich Low_complexity Low_complexity 1 21 0 2550 111 16 3 chr21 24613602 24613972 -20293598 + THE1C LTR MaLR 1 375 0 9751 116 36 42 chr21 24613972 24615560 -20292010 + THE1C-int LTR MaLR 1 1580 0 2536 124 14 0 chr21 24615560 24615930 -20291640 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr21 24616038 24616060 -20291510 + AT_rich Low_complexity Low_complexity 1 22 0 527 210 36 123 chr21 24616298 24616493 -20291077 - MER5B DNA MER1_type 0 178 1 1435 22 38 5 chr21 24616547 24616768 -20290802 + L1PA3 LINE L1 5951 6155 0 1725 265 71 2 chr21 24617375 24617885 -20289685 - MER90 LTR ERV1 0 614 70 1755 180 14 10 chr21 24617930 24618225 -20289345 - AluJb SINE Alu -16 296 1 1206 263 70 10 chr21 24618270 24618750 -20288820 - LTR27 LTR ERV1 -141 495 17 2125 138 3 0 chr21 24619109 24619407 -20288163 - AluSq SINE Alu -14 299 1 2395 92 0 0 chr21 24619694 24619997 -20287573 - AluY SINE Alu -8 303 1 198 292 15 62 chr21 24620259 24620324 -20287246 - MIR SINE MIR -116 146 85 2326 124 26 34 chr21 24623863 24624241 -20283329 - THE1C LTR MaLR 0 375 1 238 213 0 43 chr21 24627178 24627272 -20280298 + L1MC4 LINE L1 6614 6703 -1339 2169 129 0 3 chr21 24627281 24627591 -20279979 - AluSc SINE Alu 0 309 1 1961 150 69 30 chr21 24628409 24628770 -20278800 - THE1C LTR MaLR 0 375 1 689 309 69 48 chr21 24629039 24629372 -20278198 - LTR33 LTR ERVL -177 344 5 2563 150 2 8 chr21 24629953 24630352 -20277218 - MSTA LTR MaLR -31 397 1 811 280 91 49 chr21 24630468 24630818 -20276752 - LTR16A1 LTR ERVL -90 367 3 2398 138 120 5 chr21 24631177 24631561 -20276009 + MSTA LTR MaLR 1 428 0 6677 101 0 8 chr21 24632156 24633171 -20274399 - L1PA11 LINE L1 -3 6171 5151 867 201 28 0 chr21 24635086 24635265 -20272305 - MER5A DNA MER1_type -5 184 1 463 290 68 38 chr21 24635622 24635915 -20271655 + MER90 LTR ERV1 257 558 -17 256 230 122 0 chr21 24636240 24636314 -20271256 - MIR SINE MIR -70 192 110 186 259 56 112 chr21 24636281 24636424 -20271146 - MIR3 SINE MIR -65 143 9 * 207 296 80 34 chr21 24636540 24636628 -20270942 + L2 LINE L2 3180 3271 -1 1351 304 30 2 chr21 24636895 24637326 -20270244 + LTR16A LTR ERVL 1 443 -7 381 107 0 131 chr21 24638453 24638537 -20269033 - L1PA10 LINE L1 0 6168 6096 1909 27 0 0 chr21 24638537 24638756 -20268814 + L1PA5 LINE L1 5688 5906 -248 2056 140 0 0 chr21 24639164 24639464 -20268106 + AluSq SINE Alu 1 300 -13 1084 167 0 0 chr21 24639464 24639632 -20267938 + AluSg/x SINE Alu 134 301 -11 330 371 29 0 chr21 24640223 24640393 -20267177 + MIR3 SINE MIR 19 193 -15 294 29 0 0 chr21 24640910 24640945 -20266625 + (CA)n Simple_repeat Simple_repeat 2 36 0 782 178 0 37 chr21 24641529 24641664 -20265906 - FLAM_C SINE Alu -12 131 2 593 311 84 26 chr21 24642419 24642692 -20264878 + L2 LINE L2 2011 2299 -1015 747 269 20 59 chr21 24642716 24642846 -20264724 + MIR SINE MIR 20 137 -125 2400 91 0 0 chr21 24642846 24643153 -20264417 + AluY SINE Alu 1 307 -4 747 269 20 59 chr21 24643153 24643275 -20264295 + MIR SINE MIR 137 262 0 312 255 10 20 chr21 24643372 24643470 -20264100 + L2 LINE L2 1314 1410 -1904 558 248 16 8 chr21 24643578 24643707 -20263863 + FLAM_A SINE Alu 4 133 0 248 323 148 26 chr21 24643730 24643919 -20263651 + L2 LINE L2 2476 2687 -627 447 282 0 34 chr21 24643921 24644024 -20263546 + L2 LINE L2 3181 3281 -32 369 0 0 0 chr21 24644024 24644065 -20263505 + (CA)n Simple_repeat Simple_repeat 2 42 0 447 282 0 34 chr21 24644065 24644078 -20263492 + L2 LINE L2 3281 3293 -20 221 308 0 0 chr21 24644582 24644647 -20262923 + CT-rich Low_complexity Low_complexity 2 66 0 263 313 74 18 chr21 24644704 24644867 -20262703 + MIR SINE MIR 66 237 -25 2805 103 16 0 chr21 24644961 24645330 -20262240 + THE1C LTR MaLR 1 375 0 277 356 120 13 chr21 24645331 24645619 -20261951 + L2 LINE L2 2717 3029 -243 291 296 43 17 chr21 24646131 24646246 -20261324 - MIR SINE MIR -39 223 106 538 336 162 30 chr21 24646316 24647039 -20260531 - L2 LINE L2 -619 2695 1878 284 328 90 11 chr21 24648578 24648767 -20258803 - MIR SINE MIR -43 219 16 29 0 0 0 chr21 24649203 24649232 -20258338 + AT_rich Low_complexity Low_complexity 1 29 0 569 160 85 0 chr21 24649238 24649344 -20258226 + L1M1 LINE L1 10 124 -7441 1090 214 78 61 chr21 24649427 24649722 -20257848 - AluJb SINE Alu -2 300 1 180 0 0 0 chr21 24649822 24649842 -20257728 + (TG)n Simple_repeat Simple_repeat 1 20 0 5044 169 21 26 chr21 24649964 24650293 -20257277 + L1MB2 LINE L1 4904 5233 -938 2994 86 11 3 chr21 24650293 24650665 -20256905 - THE1C LTR MaLR 0 375 1 10635 125 46 3 chr21 24650665 24652180 -20255390 - THE1C-int LTR MaLR 0 1580 1 2784 118 3 0 chr21 24652180 24652554 -20255016 - THE1C LTR MaLR 0 375 1 5044 169 21 26 chr21 24652554 24653490 -20254080 + L1MB2 LINE L1 5230 6170 -1 257 326 148 42 chr21 24653490 24653849 -20253721 - LTR16A LTR ERVL -53 397 1 282 200 63 0 chr21 24653849 24653944 -20253626 + L1ME4a LINE L1 6021 6121 0 213 116 23 47 chr21 24655123 24655166 -20252404 + T-rich Low_complexity Low_complexity 3 44 0 2017 259 56 42 chr21 24655188 24655514 -20252056 - L2 LINE L2 -68 3245 2925 1162 290 63 30 chr21 24655514 24656018 -20251552 - LTR33 LTR ERVL 0 521 1 2017 259 56 42 chr21 24656018 24656669 -20250901 - L2 LINE L2 -388 2925 2257 1224 162 81 0 chr21 24656669 24656879 -20250691 - MER54A LTR ERVL 0 901 675 3987 171 16 24 chr21 24656995 24657545 -20250025 - MER54A LTR ERVL -226 675 122 1940 136 20 3 chr21 24657545 24657840 -20249730 + AluSq SINE Alu 4 303 -10 234 0 0 0 chr21 24657843 24657869 -20249701 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3987 171 16 24 chr21 24657869 24657962 -20249608 - MER54A LTR ERVL -781 120 31 405 0 0 0 chr21 24657962 24658007 -20249563 + (GA)n Simple_repeat Simple_repeat 2 46 0 3987 171 16 24 chr21 24658007 24658038 -20249532 - MER54A LTR ERVL -870 31 1 3867 241 97 129 chr21 24658146 24658983 -20248587 - L2 LINE L2 -1065 2249 1387 1820 177 0 0 chr21 24658983 24659266 -20248304 + AluJb SINE Alu 5 287 -25 3867 241 97 129 chr21 24659266 24660735 -20246835 - L2 LINE L2 -1927 1387 17 24 32 0 0 chr21 24661185 24661216 -20246354 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr21 24661449 24661477 -20246093 + AT_rich Low_complexity Low_complexity 1 28 0 2190 303 96 23 chr21 24661581 24662997 -20244573 + L2 LINE L2 1752 3274 -39 243 382 20 10 chr21 24663872 24663974 -20243596 + MIR SINE MIR 20 122 -86 397 195 5 0 chr21 24664450 24664540 -20243030 - L1ME2 LINE L1 -2 6182 6081 1964 207 94 16 chr21 24664546 24664972 -20242598 + MLT1C LTR MaLR 1 459 -8 1246 180 71 19 chr21 24664980 24665247 -20242323 - L1ME2 LINE L1 -87 6077 5797 244 246 0 0 chr21 24665262 24665323 -20242247 - L1 LINE L1 -1281 4865 4805 2491 48 0 7 chr21 24665723 24666018 -20241552 - AluY SINE Alu -18 293 1 192 351 0 0 chr21 24666301 24666375 -20241195 + L2 LINE L2 3198 3271 -1 2203 109 20 0 chr21 24666534 24666827 -20240743 - AluSx SINE Alu -13 299 1 2138 115 6 10 chr21 24667713 24668025 -20239545 - AluSx SINE Alu -1 311 1 192 345 58 0 chr21 24668291 24668378 -20239192 - MIR SINE MIR -102 160 69 234 62 0 0 chr21 24668430 24668462 -20239108 + (TG)n Simple_repeat Simple_repeat 2 33 0 442 279 9 0 chr21 24670595 24670706 -20236864 + MER81 DNA DNA 2 113 -1 203 362 64 0 chr21 24670877 24670971 -20236599 - MIR3 SINE MIR -1 207 108 5197 60 16 0 chr21 24671119 24671748 -20235822 - L1PA6 LINE L1 0 6154 5516 4144 119 14 11 chr21 24671888 24672008 -20235562 - MER61E LTR ERV1 -4 565 447 1970 110 3 63 chr21 24672008 24672325 -20235245 - AluSc SINE Alu -11 298 1 4144 119 14 11 chr21 24672325 24672767 -20234803 - MER61E LTR ERV1 -122 447 1 204 238 56 42 chr21 24674820 24674924 -20232646 + MIR SINE MIR 82 183 -65 1765 231 86 9 chr21 24675940 24676395 -20231175 + MLT1E2 LTR MaLR 137 626 0 958 270 68 9 chr21 24677657 24677952 -20229618 + MLT1E2 LTR MaLR 216 552 -102 563 137 0 10 chr21 24678414 24678516 -20229054 - L1MB4 LINE L1 0 6180 6080 663 251 101 5 chr21 24679838 24680037 -20227533 - MER20 DNA MER1_type 0 219 2 24 0 0 0 chr21 24680351 24680375 -20227195 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr21 24681040 24681065 -20226505 + AT_rich Low_complexity Low_complexity 1 25 0 263 299 74 37 chr21 24681325 24681628 -20225942 - L1MB4 LINE L1 -439 5682 5493 2011 173 20 23 chr21 24682547 24682593 -20224977 - MLT2C1 LTR ERVL 0 397 352 405 39 0 0 chr21 24682593 24682644 -20224926 + (TG)n Simple_repeat Simple_repeat 2 52 0 2011 173 20 23 chr21 24682644 24682995 -20224575 - MLT2C1 LTR ERVL -45 352 1 396 259 74 9 chr21 24683045 24683153 -20224417 - MIR SINE MIR -120 142 28 312 27 0 0 chr21 24683167 24683204 -20224366 + (CA)n Simple_repeat Simple_repeat 1 37 0 2343 164 4 122 chr21 24684374 24684909 -20222661 + MER70A LTR ERVL 1 472 0 202 116 47 0 chr21 24685949 24685992 -20221578 + (TA)n Simple_repeat Simple_repeat 1 45 0 735 142 8 15 chr21 24685994 24686053 -20221517 + Tigger5 DNA MER2_type 2190 2248 -75 596 138 69 39 chr21 24686053 24686183 -20221387 - L1PA11 LINE L1 0 6174 6041 735 142 8 15 chr21 24686183 24686257 -20221313 + Tigger5 DNA MER2_type 2248 2322 -1 1390 270 60 19 chr21 24686286 24686858 -20220712 + L2 LINE L2 2719 3312 -1 221 344 10 10 chr21 24687286 24687382 -20220188 + MIR3 SINE MIR 77 172 -36 342 286 67 9 chr21 24687486 24687591 -20219979 + L2 LINE L2 3203 3313 0 412 301 99 81 chr21 24688830 24689127 -20218443 - L2 LINE L2 -8 3305 2998 1584 196 0 10 chr21 24689127 24689423 -20218147 + AluJo SINE Alu 12 304 -8 412 301 99 81 chr21 24689423 24689510 -20218060 - L2 LINE L2 -315 2998 2914 580 248 192 5 chr21 24689546 24689760 -20217810 + MIR SINE MIR 4 257 -5 219 296 45 91 chr21 24689773 24689905 -20217665 + MIR3 SINE MIR 14 139 -69 5726 52 76 0 chr21 24690019 24690769 -20216801 - L1PA8 LINE L1 -7 6165 5359 1519 185 40 40 chr21 24690771 24691068 -20216502 - AluJo SINE Alu -15 297 1 311 116 0 0 chr21 24691118 24691161 -20216409 - MIR SINE MIR -125 83 41 548 246 103 11 chr21 24691267 24691442 -20216128 - LTR33 LTR ERVL 0 521 331 522 244 45 34 chr21 24691526 24691702 -20215868 - LTR33 LTR ERVL -324 197 20 21 89 0 0 chr21 24691917 24691973 -20215597 + AT_rich Low_complexity Low_complexity 1 56 0 536 152 58 43 chr21 24692349 24692487 -20215083 + MIR SINE MIR 121 260 -2 273 298 39 102 chr21 24693218 24693423 -20214147 - L2 LINE L2 -33 3239 3048 1812 177 3 10 chr21 24693892 24694203 -20213367 + AluJo SINE Alu 4 312 0 2097 112 14 3 chr21 24694264 24694559 -20213011 + AluSq SINE Alu 3 300 -13 1527 266 87 37 chr21 24695194 24695759 -20211811 + MLT1E LTR MaLR 1 593 0 184 343 102 7 chr21 24695870 24696007 -20211563 - MIR SINE MIR -54 208 59 680 244 0 24 chr21 24697011 24697175 -20210395 + MER3 DNA MER1_type 50 209 0 634 291 94 6 chr21 24697224 24697445 -20210125 - MIR SINE MIR -8 254 17 256 157 12 145 chr21 24699280 24699363 -20208207 + L2 LINE L2 3241 3312 -1 605 337 78 15 chr21 24699373 24699643 -20207927 - L3 LINE CR1 -250 1327 1041 23 0 0 0 chr21 24700769 24700792 -20206778 + AT_rich Low_complexity Low_complexity 1 23 0 2161 107 27 0 chr21 24700792 24701120 -20206450 - L1MA5A LINE L1 -2 6295 5959 520 76 13 25 chr21 24701478 24701557 -20206013 - MADE1 DNA Mariner 0 80 3 1923 137 159 8 chr21 24701656 24702028 -20205542 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr21 24703575 24703597 -20203973 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 24703627 24703658 -20203912 + AT_rich Low_complexity Low_complexity 1 31 0 379 320 14 34 chr21 24704949 24705096 -20202474 - L2 LINE L2 -1878 1436 1293 * 463 313 46 41 chr21 24705095 24705290 -20202280 + L2 LINE L2 327 522 -2792 2283 95 0 25 chr21 24705335 24705652 -20201918 - AluSg SINE Alu -1 309 1 358 204 102 31 chr21 24705711 24705809 -20201761 - FLAM_A SINE Alu 0 133 29 1952 291 128 59 chr21 24705816 24707000 -20200570 + L2 LINE L2 553 1817 -1497 668 262 177 29 chr21 24707449 24707861 -20199709 - L1MC4a LINE L1 -321 7487 7015 560 0 37 12 chr21 24707876 24707957 -20199613 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 28 71 0 0 chr21 24708925 24708981 -20198589 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr21 24709122 24709145 -20198425 + AT_rich Low_complexity Low_complexity 1 23 0 2141 244 96 87 chr21 24709328 24710547 -20197023 - L2 LINE L2 -2 3311 2067 900 144 0 0 chr21 24710979 24711111 -20196459 - AluSq/x SINE Alu -181 132 1 378 287 105 8 chr21 24712475 24712759 -20194811 + L1MC4a LINE L1 5563 5765 -356 1653 78 0 0 chr21 24712817 24713035 -20194535 - L1PA14 LINE L1 -295 5866 5649 431 308 53 6 chr21 24713268 24713437 -20194133 - HAL1 LINE L1 -87 2420 2244 290 225 113 0 chr21 24713455 24713535 -20194035 - HAL1 LINE L1 -337 2170 2082 1595 301 96 37 chr21 24713814 24714911 -20192659 - HAL1 LINE L1 -745 1762 602 516 191 164 0 chr21 24715063 24715173 -20192397 + MIR SINE MIR 19 146 -116 653 303 84 10 chr21 24715310 24715620 -20191950 - MER46C DNA MER2_type -5 333 1 3188 208 67 70 chr21 24716488 24717908 -20189662 - L1MD1 LINE L1 -8 6234 4817 23 0 0 0 chr21 24718156 24718179 -20189391 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr21 24718572 24718603 -20188967 + AT_rich Low_complexity Low_complexity 1 31 0 504 266 82 109 chr21 24719442 24719540 -20188030 + MLT1J LTR MaLR 3 102 -409 405 0 0 0 chr21 24719540 24719585 -20187985 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1587 158 53 0 chr21 24719585 24719851 -20187719 - AluJo SINE Alu -31 281 2 504 266 82 109 chr21 24719851 24719885 -20187685 + MLT1J LTR MaLR 101 134 -377 189 0 0 0 chr21 24719885 24719906 -20187664 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 504 266 82 109 chr21 24719906 24720294 -20187276 + MLT1J LTR MaLR 134 511 0 218 200 46 0 chr21 24720842 24720907 -20186663 + (TA)n Simple_repeat Simple_repeat 1 68 0 1773 146 14 10 chr21 24721321 24721616 -20185954 + AluSx SINE Alu 1 296 -16 227 350 77 0 chr21 24721619 24721736 -20185834 - L2 LINE L2 -17 3296 3171 261 353 26 58 chr21 24721915 24722071 -20185499 - MIR3 SINE MIR -24 184 34 288 309 12 0 chr21 24722117 24722198 -20185372 - L2 LINE L2 -2 3311 3230 201 375 116 38 chr21 24724355 24724779 -20182791 - L2 LINE L2 -341 2973 2517 362 172 0 0 chr21 24725982 24726046 -20181524 + L1MA7 LINE L1 6218 6281 -10 268 256 70 0 chr21 24726666 24726752 -20180818 + MLT1J1 LTR MaLR 66 157 -289 353 264 136 13 chr21 24726915 24727070 -20180500 + MLT1J2 LTR MaLR 255 428 -22 451 272 81 64 chr21 24727338 24727511 -20180059 + MER5B DNA MER1_type 3 178 0 189 310 99 0 chr21 24729387 24729458 -20178112 - L2 LINE L2 -1 3312 3235 2716 102 5 0 chr21 24729934 24730307 -20177263 - THE1C LTR MaLR 0 375 1 848 226 104 66 chr21 24730416 24730842 -20176728 + MLT1C LTR MaLR 16 467 0 1684 190 46 30 chr21 24731236 24731604 -20175966 - MLT1A2 LTR MaLR 0 374 1 2272 101 3 0 chr21 24732357 24732654 -20174916 + AluSc SINE Alu 1 298 -11 203 274 65 0 chr21 24732944 24733006 -20174564 + MIR SINE MIR 102 167 -95 21 0 0 0 chr21 24734743 24734764 -20172806 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 24735490 24735512 -20172058 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr21 24735524 24735549 -20172021 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1610 95 0 5 chr21 24735575 24735786 -20171784 - AluSg/x SINE Alu -17 293 84 34 0 0 0 chr21 24735786 24735820 -20171750 + AT_rich Low_complexity Low_complexity 1 34 0 3362 69 7 0 chr21 24735820 24736269 -20171301 - L1MA1 LINE L1 -6 6296 5845 364 333 94 11 chr21 24736736 24736916 -20170654 + MIR SINE MIR 66 260 -2 450 263 17 45 chr21 24737248 24737427 -20170143 - L1ME3 LINE L1 -7 6155 5982 198 265 88 15 chr21 24739190 24739258 -20168312 - L2 LINE L2 0 3313 3241 345 388 46 4 chr21 24739337 24739606 -20167964 - L2 LINE L2 -215 3057 2775 827 251 87 36 chr21 24740326 24740726 -20166844 + L2 LINE L2 2695 3132 -181 556 246 76 70 chr21 24740836 24741223 -20166347 - MLT1J2 LTR MaLR -7 428 20 276 30 0 0 chr21 24743280 24743313 -20164257 + (CA)n Simple_repeat Simple_repeat 1 33 0 2176 105 7 13 chr21 24743495 24743800 -20163770 - AluSx SINE Alu -9 303 1 1433 204 74 22 chr21 24743814 24744137 -20163433 + MER58B DNA MER1_type 1 340 -1 267 242 32 0 chr21 24744142 24744204 -20163366 + MER91 DNA MER1_type 77 140 0 2434 24 3 3 chr21 24745081 24745376 -20162194 + L1PA4 LINE L1 5861 6155 0 2290 152 60 12 chr21 24745514 24745915 -20161655 + MSTB1 LTR MaLR 1 420 -12 450 309 113 9 chr21 24745995 24746225 -20161345 - MIR SINE MIR -6 256 3 1569 174 0 11 chr21 24746646 24746921 -20160649 - AluJb SINE Alu 0 312 41 2894 3 0 0 chr21 24748133 24748444 -20159126 + AluY SINE Alu 1 311 0 2105 134 0 0 chr21 24748863 24749155 -20158415 - AluSx SINE Alu -20 292 1 1628 211 52 21 chr21 24749559 24749943 -20157627 + MSTD LTR MaLR 1 396 0 992 253 123 17 chr21 24750409 24750991 -20156579 - L2 LINE L2 0 3313 2665 2641 86 19 0 chr21 24751016 24751376 -20156194 + L1PA10 LINE L1 5472 5838 -330 * 5742 58 7 11 chr21 24751372 24751413 -20156157 - L1PA8A LINE L1 0 6131 6091 252 0 0 0 chr21 24751413 24751441 -20156129 + (TA)n Simple_repeat Simple_repeat 2 29 0 5742 58 7 11 chr21 24751441 24752144 -20155426 - L1PA8A LINE L1 -40 6091 5390 2437 92 14 32 chr21 24752144 24752513 -20155057 + L1PA10 LINE L1 5803 6165 -3 203 395 141 23 chr21 24753904 24754208 -20153362 - L2 LINE L2 -1 3271 2932 799 333 76 39 chr21 24754475 24755095 -20152475 + L2 LINE L2 2451 3095 -218 577 212 22 15 chr21 24756159 24756296 -20151274 - LTR41 LTR ERVL -631 142 5 214 231 0 86 chr21 24756433 24756550 -20151020 + CT-rich Low_complexity Low_complexity 1 107 0 21 0 0 0 chr21 24756578 24756599 -20150971 + AT_rich Low_complexity Low_complexity 1 21 0 1913 99 31 3 chr21 24757169 24757462 -20150108 + L1PA13 LINE L1 5844 6144 -19 2010 124 0 0 chr21 24757470 24757743 -20149827 + AluSx SINE Alu 6 278 -34 26 64 0 0 chr21 24757868 24757915 -20149655 + AT_rich Low_complexity Low_complexity 1 47 0 2306 169 26 9 chr21 24759561 24759980 -20147590 + MSTB LTR MaLR 1 426 0 479 232 85 40 chr21 24760367 24760544 -20147026 - MIR SINE MIR -55 207 23 31 44 0 0 chr21 24761535 24761580 -20145990 + AT_rich Low_complexity Low_complexity 1 45 0 3190 46 5 0 chr21 24761766 24762161 -20145409 - L1PA7 LINE L1 -2 6152 5756 3417 119 2 10 chr21 24762161 24762664 -20144906 + Tigger4(Zombi) DNA MER2_type 904 1402 -1329 1292 168 77 96 chr21 24762664 24763039 -20144531 + THE1C LTR MaLR 3 370 -5 9002 103 17 23 chr21 24763045 24764388 -20143182 + Tigger4(Zombi) DNA MER2_type 1397 2731 0 24 100 0 0 chr21 24764416 24764496 -20143074 + AT_rich Low_complexity Low_complexity 1 80 0 181 153 17 17 chr21 24764509 24764568 -20143002 + (TA)n Simple_repeat Simple_repeat 1 59 0 2596 170 18 16 chr21 24764572 24765019 -20142551 - MLT2B2 LTR ERVL -67 448 1 210 171 0 0 chr21 24765024 24765065 -20142505 + (TTG)n Simple_repeat Simple_repeat 3 43 0 254 277 87 76 chr21 24765408 24765592 -20141978 + L2 LINE L2 3128 3313 0 1319 299 76 10 chr21 24765678 24766167 -20141403 + LTR33 LTR ERVL 1 521 0 188 139 0 23 chr21 24766295 24766338 -20141232 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1116 171 5 0 chr21 24766371 24766564 -20141006 + L1PA16 LINE L1 5964 6157 -9 21 0 0 0 chr21 24766564 24766585 -20140985 + AT_rich Low_complexity Low_complexity 1 21 0 1804 155 152 11 chr21 24767213 24767588 -20139982 - MSTA LTR MaLR 0 428 1 304 149 0 0 chr21 24768175 24768222 -20139348 - L2 LINE L2 -1 3312 3266 291 298 107 36 chr21 24768854 24769022 -20138548 - MLT1I LTR MaLR -208 201 22 1288 212 146 9 chr21 24769023 24769344 -20138226 + MLT1A1 LTR MaLR 1 365 0 578 237 79 93 chr21 24769585 24770015 -20137555 - HAL1 LINE L1 -1336 1171 748 1499 226 118 2 chr21 24770074 24770498 -20137072 - Charlie4a DNA MER1_type 0 508 36 653 337 99 38 chr21 24770512 24771170 -20136400 - HAL1 LINE L1 -1807 700 3 2449 267 129 31 chr21 24771453 24773435 -20134135 + L1ME LINE L1 16 2190 -3890 195 42 0 0 chr21 24773550 24773574 -20133996 + (GA)n Simple_repeat Simple_repeat 1 24 0 420 20 0 0 chr21 24773577 24773626 -20133944 + (TG)n Simple_repeat Simple_repeat 2 50 0 1453 247 100 24 chr21 24773628 24774216 -20133354 + L1M4 LINE L1 3801 4433 -1713 1862 93 38 28 chr21 24774354 24774645 -20132925 + L1PA10 LINE L1 5870 6163 -5 281 213 16 16 chr21 24774859 24774920 -20132650 - MLT1J LTR MaLR -316 195 135 2213 87 3 3 chr21 24774923 24775211 -20132359 + AluSx SINE Alu 1 288 -24 39 0 0 0 chr21 24775205 24775244 -20132326 + AT_rich Low_complexity Low_complexity 1 39 0 363 291 75 8 chr21 24775244 24775378 -20132192 - MLT1J LTR MaLR -368 143 1 26 30 0 0 chr21 24775980 24776013 -20131557 + AT_rich Low_complexity Low_complexity 1 33 0 643 170 109 26 chr21 24776103 24776273 -20131297 + FRAM SINE Alu 1 173 -3 29 47 0 0 chr21 24776436 24776479 -20131091 + AT_rich Low_complexity Low_complexity 1 43 0 335 276 33 111 chr21 24776538 24776719 -20130851 + L2 LINE L2 2922 3088 -225 2224 27 27 54 chr21 24776864 24777160 -20130410 - AluY SINE Alu -1 310 23 837 261 21 0 chr21 24777333 24777574 -20129996 - MER69 DNA AcHobo -270 2256 2011 1184 287 101 36 chr21 24777578 24778111 -20129459 - MER69 DNA AcHobo -658 568 1 2052 221 94 12 chr21 24778425 24779018 -20128552 + LTR48B LTR ERV1 1 642 -2 398 263 11 0 chr21 24779233 24779328 -20128242 - MIR SINE MIR -33 229 134 1732 180 3 7 chr21 24779665 24779948 -20127622 - AluJo SINE Alu -30 282 1 342 344 6 49 chr21 24779967 24780150 -20127420 + MER5A DNA MER1_type 14 188 -1 14569 134 33 13 chr21 24781228 24783593 -20123977 + Tigger1 DNA MER2_type 1 2413 -5 2520 232 90 42 chr21 24783607 24784755 -20122815 - L1MDa LINE L1 -3953 2768 1513 33 0 0 0 chr21 24786048 24786081 -20121489 + AT_rich Low_complexity Low_complexity 1 33 0 554 240 0 0 chr21 24786093 24786197 -20121373 - FLAM_A SINE Alu -38 104 1 235 275 58 0 chr21 24786305 24786374 -20121196 - MIR SINE MIR -110 152 80 2209 128 128 8 chr21 24787753 24788135 -20119435 - MSTA LTR MaLR 0 428 1 255 328 169 11 chr21 24788323 24788512 -20119058 + MIR SINE MIR 38 256 -6 213 320 67 70 chr21 24788915 24789303 -20118267 + L2 LINE L2 2120 2506 -808 278 350 10 0 chr21 24789373 24789473 -20118097 + MER5A DNA MER1_type 6 106 -83 685 183 0 0 chr21 24789662 24789777 -20117793 - FLAM_A SINE Alu -21 121 7 424 273 0 0 chr21 24789827 24789926 -20117644 - MER81 DNA DNA 0 114 16 538 291 103 45 chr21 24790015 24790547 -20117023 - L1ME3A LINE L1 -241 5929 5367 398 149 0 0 chr21 24790723 24790790 -20116780 - L1MB7 LINE L1 -19 6165 6099 1119 278 92 49 chr21 24790891 24791965 -20115605 - L1ME3A LINE L1 -1120 5026 3912 265 399 39 29 chr21 24791965 24792173 -20115397 + L2 LINE L2 3007 3216 -56 22 70 0 0 chr21 24792585 24792628 -20114942 + AT_rich Low_complexity Low_complexity 1 43 0 245 360 60 60 chr21 24793791 24794027 -20113543 + L2 LINE L2 2831 3069 -203 678 78 0 0 chr21 24794027 24794129 -20113441 + (CA)n Simple_repeat Simple_repeat 2 103 0 245 360 60 60 chr21 24794129 24794311 -20113259 + L2 LINE L2 3068 3249 -23 1921 136 18 0 chr21 24794594 24794901 -20112669 + AluSx SINE Alu 1 312 0 35 0 0 0 chr21 24796148 24796183 -20111387 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 24797992 24798013 -20109557 + AT_rich Low_complexity Low_complexity 1 21 0 2212 120 3 0 chr21 24798027 24798328 -20109242 + AluSx SINE Alu 1 302 -10 31 0 0 0 chr21 24798967 24798998 -20108572 + AT_rich Low_complexity Low_complexity 1 31 0 5288 124 35 16 chr21 24799613 24800904 -20106666 + L1PA16 LINE L1 4842 6157 -9 200 118 176 0 chr21 24802282 24802316 -20105254 - L2 LINE L2 -76 3237 3198 213 39 0 0 chr21 24802814 24802840 -20104730 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 253 284 110 0 chr21 24804972 24805081 -20102489 + L1P LINE L1 4120 4240 -1906 252 243 83 55 chr21 24805168 24805349 -20102221 + L1 LINE L1 4474 4659 -1487 357 333 171 26 chr21 24805415 24805982 -20101588 + L1 LINE L1 4744 5392 -754 1650 134 84 28 chr21 24807293 24807577 -20099993 + AluSx SINE Alu 1 300 -12 360 345 90 30 chr21 24807582 24808049 -20099521 + HAL1 LINE L1 1117 1611 -896 555 254 30 30 chr21 24808927 24809096 -20098474 - MIR SINE MIR -16 246 78 4742 123 27 39 chr21 24809343 24809902 -20097668 - L1PA16 LINE L1 -9 6157 5610 2259 77 49 0 chr21 24809902 24810188 -20097382 - AluSq SINE Alu -13 300 1 4742 123 27 39 chr21 24810188 24810470 -20097100 - L1PA16 LINE L1 -556 5610 5326 * 8778 204 24 11 chr21 24810456 24811893 -20095677 - L1 LINE L1 -1194 4952 3482 2250 137 22 22 chr21 24811893 24812257 -20095313 + THE1B LTR MaLR 1 364 0 8778 204 24 11 chr21 24812257 24812811 -20094759 - L1 LINE L1 -2664 3482 2936 701 213 138 0 chr21 24813050 24813210 -20094360 - MER5A DNA MER1_type -7 182 1 375 23 0 0 chr21 24813292 24813336 -20094234 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr21 24813740 24813762 -20093808 + AT_rich Low_complexity Low_complexity 1 22 0 536 237 68 34 chr21 24813969 24814176 -20093394 - L1MC4 LINE L1 0 8042 7829 2213 232 97 143 chr21 24814206 24814858 -20092712 - L1MC4a LINE L1 -563 7245 6564 180 0 0 0 chr21 24814858 24814878 -20092692 + (CA)n Simple_repeat Simple_repeat 2 21 0 2213 232 97 143 chr21 24814878 24816314 -20091256 - L1MC4a LINE L1 -1244 6564 5254 305 301 53 0 chr21 24817122 24817235 -20090335 - L1ME4a LINE L1 -208 5913 5795 454 335 40 28 chr21 24817258 24817506 -20090064 + L2 LINE L2 2596 2846 -468 247 184 122 0 chr21 24817688 24817737 -20089833 + MER5A DNA MER1_type 134 188 -1 1001 164 22 177 chr21 24817750 24818034 -20089536 - Charlie5 DNA MER1_type -4 2620 2428 2383 90 0 0 chr21 24818034 24818335 -20089235 - AluY SINE Alu -10 301 1 1001 164 22 177 chr21 24818335 24818496 -20089074 - Charlie5 DNA MER1_type -196 2428 2244 520 147 0 125 chr21 24818507 24818643 -20088927 - Charlie5 DNA MER1_type -2491 121 3 232 310 35 26 chr21 24819040 24819156 -20088414 + L2 LINE L2 3197 3313 0 207 300 0 0 chr21 24819855 24819905 -20087665 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 299 299 35 118 chr21 24819905 24820086 -20087484 + L2 LINE L2 2939 3069 -244 1649 120 62 4 chr21 24820086 24820328 -20087242 - AluSq SINE Alu -57 256 1 299 299 35 118 chr21 24820328 24820551 -20087019 + L2 LINE L2 3069 3309 -4 912 208 89 5 chr21 24820925 24821127 -20086443 + MER20 DNA MER1_type 1 219 0 1096 212 12 133 chr21 24821290 24821446 -20086124 + MLT1A1 LTR MaLR 1 174 -191 1657 173 3 58 chr21 24821446 24821759 -20085811 + AluJo SINE Alu 1 296 -16 1096 212 12 133 chr21 24821759 24822017 -20085553 + MLT1A1 LTR MaLR 174 365 0 326 268 133 65 chr21 24822021 24822390 -20085180 + HAL1 LINE L1 2 395 -2112 230 376 96 6 chr21 24822524 24822681 -20084889 - L2 LINE L2 -429 2885 2715 1593 173 25 25 chr21 24822688 24823006 -20084564 + MSTA LTR MaLR 111 428 0 2002 130 0 7 chr21 24823706 24823999 -20083571 + AluSq SINE Alu 1 291 -22 1769 178 39 24 chr21 24826357 24826740 -20080830 - MLT1B LTR MaLR 0 390 2 34 0 0 0 chr21 24828114 24828148 -20079422 + AT_rich Low_complexity Low_complexity 1 34 0 639 295 92 41 chr21 24829229 24829619 -20077951 - HAL1 LINE L1 -2097 410 1 300 27 0 0 chr21 24830653 24830690 -20076880 + (TG)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr21 24830957 24830988 -20076582 + (CCA)n Simple_repeat Simple_repeat 1 31 0 706 233 21 37 chr21 24831304 24831493 -20076077 - MER63A DNA MER1_type -24 186 1 2167 132 8 39 chr21 24831754 24832141 -20075429 + THE1C LTR MaLR 1 375 0 522 317 78 24 chr21 24832509 24832969 -20074601 - L1ME3A LINE L1 -260 5910 5426 669 217 23 29 chr21 24833014 24833358 -20074212 + L1ME2 LINE L1 5725 6158 -6 2337 100 0 6 chr21 24833522 24833833 -20073737 - AluSg1 SINE Alu 0 309 1 13370 154 41 34 chr21 24833865 24837799 -20069771 - L1MA3 LINE L1 0 6305 2361 816 169 0 45 chr21 24838737 24838891 -20068679 + MER46B DNA MER2_type 1 22 -214 22 0 0 0 chr21 24839495 24839517 -20068053 + AT_rich Low_complexity Low_complexity 1 22 0 263 337 32 0 chr21 24839952 24840047 -20067523 + MIR SINE MIR 45 142 -66 557 244 39 57 chr21 24841465 24841694 -20065876 - MER112 DNA MER1_type 0 260 36 679 302 80 30 chr21 24841728 24842208 -20065362 + ERVL LTR ERVL 3238 3739 -1915 259 292 95 0 chr21 24842400 24842588 -20064982 + ERVL LTR ERVL 4067 4249 -1405 254 281 67 0 chr21 24842662 24842751 -20064819 + MLT1L LTR MaLR 300 394 -221 1960 209 70 21 chr21 24842878 24843346 -20064224 - MLT1D LTR MaLR 0 505 15 1508 235 66 9 chr21 24844871 24845326 -20062244 - Charlie4a DNA MER1_type 0 508 28 1240 51 6 0 chr21 24845437 24845594 -20061976 + L1PA5 LINE L1 5988 6145 -9 1761 159 29 0 chr21 24846597 24846874 -20060696 + AluJb SINE Alu 1 285 -27 700 74 19 0 chr21 24846874 24846982 -20060588 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 22 35 0 0 chr21 24847159 24847188 -20060382 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr21 24848222 24848253 -20059317 + AT_rich Low_complexity Low_complexity 1 31 0 207 343 41 41 chr21 24849501 24849673 -20057897 + L2 LINE L2 3078 3249 -23 2300 75 3 7 chr21 24849937 24850232 -20057338 + AluY SINE Alu 1 294 -17 714 136 0 0 chr21 24851458 24851576 -20055994 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 369 136 0 0 chr21 24851578 24851637 -20055933 - AluS SINE Alu -29 272 220 623 153 81 9 chr21 24851637 24851748 -20055822 - AluJb SINE Alu -124 188 70 240 143 0 0 chr21 24851750 24851785 -20055785 - Alu SINE Alu -141 162 128 198 270 195 31 chr21 24851967 24852126 -20055444 - MIR SINE MIR -34 228 44 294 143 0 0 chr21 24852209 24852258 -20055312 + (TG)n Simple_repeat Simple_repeat 1 49 0 25 31 0 0 chr21 24852626 24852658 -20054912 + AT_rich Low_complexity Low_complexity 1 32 0 613 299 57 50 chr21 24853270 24853926 -20053644 - L1MC/D LINE L1 -361 5801 5138 210 118 0 0 chr21 24854067 24854101 -20053469 + (TG)n Simple_repeat Simple_repeat 2 35 0 626 308 110 52 chr21 24854165 24854893 -20052677 - L1MC/D LINE L1 -1206 4940 4171 549 301 31 24 chr21 24855083 24855391 -20052179 + L1M3d LINE L1 111 399 -5492 450 242 8 106 chr21 24855388 24855520 -20052050 + L1M4c LINE L1 906 1024 -5745 * 471 230 74 9 chr21 24855493 24855936 -20051634 + L1M4c LINE L1 2354 2885 -3965 * 1274 259 34 8 chr21 24855925 24856277 -20051293 + L1M4c LINE L1 3134 3494 -3354 7963 182 69 22 chr21 24856282 24857881 -20049689 - MER52A LTR ERV1 -1 1754 8 543 239 48 24 chr21 24857914 24858123 -20049447 + L1M4c LINE L1 3504 3717 -3131 2448 77 3 0 chr21 24858254 24858564 -20049006 - AluY SINE Alu 0 311 1 302 323 66 9 chr21 24858646 24858912 -20048658 + L1MC/D LINE L1 5546 5824 -320 474 18 0 0 chr21 24860220 24860275 -20047295 + (CA)n Simple_repeat Simple_repeat 2 56 0 2917 162 50 78 chr21 24860473 24861239 -20046331 - L1MA9 LINE L1 0 6312 5569 1102 221 37 0 chr21 24861257 24861529 -20046041 - L1 LINE L1 -3583 3523 3242 1240 220 26 79 chr21 24861530 24861908 -20045662 - MLT1A1 LTR MaLR -7 358 1 222 37 0 0 chr21 24861978 24862005 -20045565 + (TG)n Simple_repeat Simple_repeat 2 28 0 46 33 0 0 chr21 24862005 24862065 -20045505 + AT_rich Low_complexity Low_complexity 1 60 0 2592 237 57 55 chr21 24862085 24863543 -20044027 - L1 LINE L1 -3932 3174 2027 2103 145 3 0 chr21 24863543 24863854 -20043716 - AluSx SINE Alu 0 312 1 2592 237 57 55 chr21 24863854 24864742 -20042828 - L1 LINE L1 -5079 2027 1142 1350 219 50 7 chr21 24864748 24865031 -20042539 - L1 LINE L1 -6735 295 1 943 267 80 17 chr21 24865038 24865450 -20042120 - L1ME2 LINE L1 0 6164 5727 518 190 0 17 chr21 24865654 24865770 -20041800 + L1MA10 LINE L1 6166 6279 -55 21 71 0 0 chr21 24868002 24868044 -20039526 + AT_rich Low_complexity Low_complexity 1 42 0 276 207 52 86 chr21 24868096 24868212 -20039358 - L1ME3A LINE L1 -123 6047 5936 1410 248 84 77 chr21 24868308 24869021 -20038549 - L1ME3A LINE L1 -133 6273 5556 6167 123 10 29 chr21 24869062 24869421 -20038149 - L1PB1 LINE L1 0 6151 5787 378 61 0 0 chr21 24869421 24869470 -20038100 + (TA)n Simple_repeat Simple_repeat 1 49 0 6167 123 10 29 chr21 24869470 24869580 -20037990 - L1PB1 LINE L1 -364 5787 5676 438 108 0 0 chr21 24869580 24869645 -20037925 + (TG)n Simple_repeat Simple_repeat 2 66 0 6167 123 10 29 chr21 24869645 24870572 -20036998 - L1PB1 LINE L1 -475 5676 4781 537 275 100 49 chr21 24870548 24870959 -20036611 - L1ME3A LINE L1 -831 5315 4884 * 273 75 0 0 chr21 24870989 24871029 -20036541 + (TG)n Simple_repeat Simple_repeat 2 41 0 369 10 122 0 chr21 24871029 24871127 -20036443 + (TA)n Simple_repeat Simple_repeat 2 111 0 473 256 36 63 chr21 24871127 24871459 -20036111 - L1ME3A LINE L1 -1602 4780 4458 236 307 92 27 chr21 24871483 24871854 -20035716 - L1ME3A LINE L1 -4756 1807 1413 366 281 100 48 chr21 24871871 24872081 -20035489 - L1ME3A LINE L1 -5071 1301 1020 23 33 0 0 chr21 24872097 24872127 -20035443 + AT_rich Low_complexity Low_complexity 1 30 0 6476 169 31 13 chr21 24873435 24873998 -20033572 - L1P LINE L1 -1170 4976 4425 321 26 0 0 chr21 24873998 24874036 -20033534 + (TG)n Simple_repeat Simple_repeat 1 38 0 6476 169 31 13 chr21 24874036 24874725 -20032845 - L1P LINE L1 -1721 4425 3701 5710 137 7 1 chr21 24874778 24875732 -20031838 + L1PA13 LINE L1 5190 6149 -14 1975 156 0 0 chr21 24876670 24876965 -20030605 - AluSx SINE Alu -17 295 1 469 231 119 68 chr21 24877150 24877444 -20030126 - L1ME4a LINE L1 -56 6065 5757 2383 137 0 3 chr21 24877446 24877797 -20029773 - THE1B LTR MaLR 0 364 15 728 169 14 0 chr21 24877824 24877972 -20029598 + CT-rich Low_complexity Low_complexity 3 152 0 1162 272 109 48 chr21 24878688 24879387 -20028183 + L1M4 LINE L1 3790 4584 -1562 2113 120 7 0 chr21 24879387 24879678 -20027892 - AluSq SINE Alu -19 294 2 1162 272 109 48 chr21 24879678 24880093 -20027477 + L1M4 LINE L1 4584 4972 -1174 750 303 66 56 chr21 24880320 24880597 -20026973 + L1MEc LINE L1 123 396 -6000 2241 95 0 0 chr21 24880597 24880908 -20026662 + AluSx SINE Alu 1 311 0 750 303 66 56 chr21 24880908 24881384 -20026186 + L1MEc LINE L1 396 885 -5511 292 279 31 0 chr21 24881436 24881660 -20025910 + L1MEc LINE L1 877 1147 -5249 4964 21 3 0 chr21 24882397 24882972 -20024598 - L1PA2 LINE L1 -171 5984 5408 1405 12 0 0 chr21 24882972 24883130 -20024440 + L1PA2 LINE L1 5993 6153 -2 2779 140 9 31 chr21 24883160 24883652 -20023918 + MLT1C LTR MaLR 1 390 0 371 130 0 87 chr21 24885531 24885600 -20021970 - MER8 DNA MER2_type 0 239 177 6726 36 5 0 chr21 24885612 24886418 -20021152 - L1PA5 LINE L1 -7 6147 5338 642 36 0 0 chr21 24886418 24886501 -20021069 + L1P LINE L1 5279 5361 -793 15616 142 37 8 chr21 24886501 24889097 -20018473 + Tigger2 DNA MER2_type 47 2718 0 859 228 119 20 chr21 24889097 24889399 -20018171 + LTR33 LTR ERVL 190 521 0 279 0 0 0 chr21 24889780 24889811 -20017759 + (TG)n Simple_repeat Simple_repeat 2 32 0 1206 121 44 14 chr21 24890565 24890800 -20016770 + MER61D LTR ERV1 1 223 -211 1997 140 30 15 chr21 24890808 24891144 -20016426 - THE1A LTR MaLR -14 341 1 1289 130 21 0 chr21 24891145 24891337 -20016233 + MER61D LTR ERV1 306 501 0 260 186 0 0 chr21 24891655 24891698 -20015872 + AluSp SINE Alu 145 187 -116 2997 156 8 14 chr21 24891701 24892201 -20015369 - LOR1a LTR ERV1 0 497 1 479 139 0 0 chr21 24892230 24892309 -20015261 - LOR1a-int LTR ERV1 -12 8108 8030 * 1827 98 0 4 chr21 24892308 24892563 -20015007 - LOR1a-int LTR ERV1 -2056 6064 5811 4224 127 63 18 chr21 24892565 24893187 -20014383 - LOR1a-int LTR ERV1 -2597 5523 4859 1486 199 17 10 chr21 24893187 24893478 -20014092 + AluJb SINE Alu 3 295 -17 4224 127 63 18 chr21 24893478 24893618 -20013952 - LOR1a-int LTR ERV1 -3261 4859 4727 1595 141 16 46 chr21 24893597 24893902 -20013668 - LOR1a-int LTR ERV1 -3873 4247 3952 * 13812 108 20 20 chr21 24893919 24896165 -20011405 - LOR1a-int LTR ERV1 -4431 3689 1444 22063 147 17 19 chr21 24896165 24897782 -20009788 - L1P3 LINE L1 -1299 5162 3543 185 0 40 0 chr21 24897782 24897807 -20009763 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 22063 147 17 19 chr21 24897807 24901298 -20006272 - L1P3 LINE L1 -2918 3543 3 6406 124 60 5 chr21 24901299 24902307 -20005263 - LOR1a-int LTR ERV1 -7057 1063 1 3176 154 6 0 chr21 24902308 24902801 -20004769 - LOR1a LTR ERV1 -1 496 1 763 160 17 0 chr21 24902801 24902920 -20004650 + FAM SINE Alu 51 171 -14 401 349 27 7 chr21 24904139 24904285 -20003285 + MIR3 SINE MIR 41 189 -19 27 29 0 0 chr21 24904411 24904445 -20003125 + AT_rich Low_complexity Low_complexity 1 34 0 682 219 0 7 chr21 24904445 24904582 -20002988 - AluSq/x SINE Alu -176 136 1 1564 189 39 4 chr21 24904617 24904898 -20002672 - AluJo SINE Alu -21 291 1 649 225 91 87 chr21 24905523 24905799 -20001771 + LTR16A1 LTR ERVL 45 321 -136 299 326 41 0 chr21 24905824 24905922 -20001648 + LTR33A LTR ERVL 59 160 -363 234 231 0 0 chr21 24905946 24905985 -20001585 - MER50 LTR ERV1 -23 711 673 1493 101 5 10 chr21 24905996 24906203 -20001367 + AluSg/x SINE Alu 89 294 -18 22 35 0 0 chr21 24908372 24908401 -19999169 + AT_rich Low_complexity Low_complexity 1 29 0 2001 100 22 0 chr21 24909242 24909539 -19998031 + AluSx SINE Alu 6 308 0 925 209 66 50 chr21 24909989 24910290 -19997280 + LTR56 LTR ERV1 140 445 0 192 262 95 36 chr21 24911903 24911987 -19995583 - MER5B DNA MER1_type -20 158 70 22 0 0 0 chr21 24912335 24912357 -19995213 + AT_rich Low_complexity Low_complexity 1 22 0 2442 39 0 0 chr21 24912766 24913048 -19994522 - AluY SINE Alu -10 301 20 182 373 80 0 chr21 24914377 24914452 -19993118 + L2 LINE L2 3151 3231 -41 454 244 22 103 chr21 24914841 24915112 -19992458 + LTR37B LTR ERV1 209 457 -11 400 286 124 21 chr21 24915667 24915908 -19991662 + L1ME4a LINE L1 5657 5922 -199 182 368 53 21 chr21 24915935 24916030 -19991540 + MER5A DNA MER1_type 91 188 -1 290 244 26 39 chr21 24916177 24916255 -19991315 - L2 LINE L2 -4 3309 3233 221 316 13 13 chr21 24916474 24916550 -19991020 - MIR SINE MIR -5 257 182 30 77 0 0 chr21 24917195 24917260 -19990310 + AT_rich Low_complexity Low_complexity 1 65 0 304 232 21 42 chr21 24917551 24917646 -19989924 - MLT1J LTR MaLR -43 468 376 302 248 124 75 chr21 24917748 24917909 -19989661 - MLT1J LTR MaLR -318 193 25 216 274 0 0 chr21 24918070 24918121 -19989449 + (TG)n Simple_repeat Simple_repeat 1 51 0 22 56 0 0 chr21 24918786 24918822 -19988748 + AT_rich Low_complexity Low_complexity 1 36 0 1894 144 7 14 chr21 24918822 24919113 -19988457 - AluSx SINE Alu -19 293 5 5779 111 8 6 chr21 24920105 24920946 -19986624 - MER4B-int LTR ERV1 -2055 4703 3861 2544 172 38 34 chr21 24921185 24921415 -19986155 + MER70A LTR ERVL 1 229 -243 2135 78 4 0 chr21 24921415 24921684 -19985886 + AluSq SINE Alu 2 271 -42 2544 172 38 34 chr21 24921684 24921822 -19985748 + MER70A LTR ERVL 229 374 -98 2172 119 23 14 chr21 24921822 24922174 -19985396 - THE1A LTR MaLR 0 355 1 2544 172 38 34 chr21 24922174 24922274 -19985296 + MER70A LTR ERVL 374 472 0 255 133 0 0 chr21 24923521 24923566 -19984004 + (CA)n Simple_repeat Simple_repeat 2 46 0 763 313 32 4 chr21 24923906 24924155 -19983415 + MIR SINE MIR 1 256 -6 185 259 118 12 chr21 24925690 24925775 -19981795 + MIR SINE MIR 51 144 -118 2263 126 0 0 chr21 24926070 24926380 -19981190 + AluSg SINE Alu 1 310 0 182 308 0 19 chr21 24927165 24927217 -19980353 + L2 LINE L2 3136 3186 -86 721 276 23 49 chr21 24927718 24927982 -19979588 - HERV16 LTR ERVL -1339 3657 3401 647 271 165 35 chr21 24928143 24928549 -19979021 - LTR16B LTR ERVL -3 461 3 352 339 16 0 chr21 24928886 24929010 -19978560 + L2 LINE L2 3188 3313 0 198 0 0 0 chr21 24929231 24929253 -19978317 + (A)n Simple_repeat Simple_repeat 1 22 0 869 231 4 2 chr21 24930111 24930362 -19977208 + MER2 DNA MER2_type 41 332 -13 2080 150 27 21 chr21 24931949 24932322 -19975248 + THE1C LTR MaLR 1 375 0 2406 129 17 0 chr21 24932622 24932978 -19974592 - THE1B LTR MaLR 0 364 3 10475 105 26 31 chr21 24932980 24934569 -19973001 - THE1B-int LTR MaLR 0 1580 1 2300 145 17 3 chr21 24934569 24934928 -19972642 - THE1B LTR MaLR 0 364 1 1748 171 133 81 chr21 24935403 24935883 -19971687 - MLT1D LTR MaLR 0 505 1 396 326 39 55 chr21 24936859 24937166 -19970404 + L2 LINE L2 1527 1828 -1486 2527 152 16 16 chr21 24937424 24937852 -19969718 - MSTA LTR MaLR 0 428 1 263 286 87 40 chr21 24937876 24937968 -19969602 - L1ME3 LINE L1 -223 5939 5853 369 0 0 0 chr21 24937968 24938009 -19969561 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 263 286 87 40 chr21 24938009 24938168 -19969402 - L1ME3 LINE L1 -309 5853 5676 288 242 21 11 chr21 24938312 24938407 -19969163 - L1MEd LINE L1 -5394 725 630 321 312 181 33 chr21 24938502 24938861 -19968709 - L1MEd LINE L1 -5639 480 69 1736 198 125 9 chr21 24939140 24939183 -19968387 - MLT2B2 LTR ERVL 0 554 517 579 85 0 0 chr21 24939183 24939265 -19968305 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1736 198 125 9 chr21 24939265 24939650 -19967920 - MLT2B2 LTR ERVL -37 517 20 721 286 100 0 chr21 24939917 24940228 -19967342 + LTR33A LTR ERVL 182 523 0 352 310 101 50 chr21 24940528 24940635 -19966935 + L2 LINE L2 2935 3035 -278 2124 114 30 0 chr21 24940635 24940809 -19966761 - AluSx SINE Alu -6 306 118 224 30 30 0 chr21 24940809 24940842 -19966728 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2124 114 30 0 chr21 24940842 24940964 -19966606 - AluSx SINE Alu -194 118 1 352 310 101 50 chr21 24940964 24941214 -19966356 + L2 LINE L2 3035 3310 -3 251 310 95 26 chr21 24942339 24942455 -19965115 - MIR3 SINE MIR -51 157 34 2288 104 3 0 chr21 24942572 24942879 -19964691 - AluSc SINE Alu -1 308 1 22 35 0 0 chr21 24942907 24942936 -19964634 + AT_rich Low_complexity Low_complexity 1 29 0 3464 86 0 24 chr21 24942937 24943428 -19964142 - L1PB1 LINE L1 -7 6144 5666 228 230 150 0 chr21 24944092 24944192 -19963378 - MIR SINE MIR 0 262 148 356 218 273 0 chr21 24944208 24944318 -19963252 - MLT1J2 LTR MaLR -26 424 285 526 269 29 6 chr21 24944352 24944523 -19963047 - MLT1J2 LTR MaLR -275 175 1 217 341 81 13 chr21 24944546 24944686 -19962884 - MIR SINE MIR -64 144 15 231 36 0 0 chr21 24945559 24945587 -19961983 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1557 222 37 24 chr21 24945843 24946152 -19961418 + MLT1C LTR MaLR 2 320 -147 3783 109 4 11 chr21 24946152 24946710 -19960860 - MER41A LTR ERV1 0 554 1 1557 222 37 24 chr21 24946710 24946860 -19960710 + MLT1C LTR MaLR 320 467 0 486 75 0 0 chr21 24949032 24949099 -19958471 + (TG)n Simple_repeat Simple_repeat 2 68 0 2652 115 24 0 chr21 24949522 24949931 -19957639 - MSTA LTR MaLR -9 419 1 2335 68 0 77 chr21 24950258 24950583 -19956987 + AluSg SINE Alu 1 300 -10 589 277 46 42 chr21 24950692 24950940 -19956630 - MIR SINE MIR -10 252 1 244 318 91 0 chr21 24950988 24951076 -19956494 - L2 LINE L2 -9 3263 3168 240 200 0 0 chr21 24951564 24951619 -19955951 + (CA)n Simple_repeat Simple_repeat 1 55 0 2340 104 0 0 chr21 24952337 24952635 -19954935 + AluSx SINE Alu 1 298 -14 405 0 0 0 chr21 24952982 24953027 -19954543 + (TG)n Simple_repeat Simple_repeat 2 46 0 1652 221 77 15 chr21 24953039 24953495 -19954075 + MLT1D LTR MaLR 20 503 -2 2179 103 0 7 chr21 24953639 24953941 -19953629 - AluSg SINE Alu -10 300 1 430 225 40 46 chr21 24954633 24954784 -19952786 - MER63A DNA MER1_type -21 189 40 806 175 10 127 chr21 24954938 24955246 -19952324 - ORSL DNA AcHobo 0 275 4 1637 152 106 29 chr21 24955563 24955911 -19951659 + THE1C LTR MaLR 1 375 0 309 198 0 0 chr21 24956032 24956123 -19951447 + T-rich Low_complexity Low_complexity 1 91 0 11880 217 45 16 chr21 24956154 24956794 -19950776 - L1PB3 LINE L1 -4 6207 5587 2360 109 0 0 chr21 24956794 24957105 -19950465 + AluY SINE Alu 1 311 0 11880 217 45 16 chr21 24957105 24959077 -19948493 - L1PB3 LINE L1 -624 5587 3675 2416 95 0 0 chr21 24959077 24959381 -19948189 - AluSx SINE Alu -8 304 1 11880 217 45 16 chr21 24959381 24961012 -19946558 - L1PB3 LINE L1 -2536 3675 2094 1107 149 21 0 chr21 24961012 24961200 -19946370 - L1PA15 LINE L1 -5 6160 5969 11880 217 45 16 chr21 24961200 24962823 -19944747 - L1PB3 LINE L1 -4117 2094 158 1810 182 35 27 chr21 24962827 24963375 -19944195 - MLT2A2 LTR ERVL -8 546 1 741 175 32 7 chr21 24963380 24963534 -19944036 - L1PB3 LINE L1 -6046 158 1 * 2370 304 57 38 chr21 24963508 24965060 -19942510 - L1PBa LINE L1 -5233 1630 49 1151 176 25 0 chr21 24965167 24965405 -19942165 - L1MA6 LINE L1 -4 6296 6053 2763 82 92 5 chr21 24965571 24965983 -19941587 - LTR7 LTR ERV1 -2 448 1 444 322 13 20 chr21 24966125 24966274 -19941296 - MER5A DNA MER1_type -7 182 35 382 328 92 11 chr21 24966437 24966611 -19940959 - MIR SINE MIR -54 208 21 180 0 0 0 chr21 24966732 24966752 -19940818 + (TTG)n Simple_repeat Simple_repeat 2 21 0 822 173 62 6 chr21 24966767 24966946 -19940624 + LTR64 LTR ERVK 1 189 -369 1799 123 0 0 chr21 24966946 24967198 -19940372 + AluSg SINE Alu 1 252 -58 2313 124 0 0 chr21 24967243 24967589 -19939981 - L1PA15 LINE L1 -5 6160 5815 230 86 0 0 chr21 24967609 24967644 -19939926 - L1PA15 LINE L1 -744 5421 5387 2088 252 45 46 chr21 24967699 24968416 -19939154 + MER72 LTR ERV1 7 722 0 252 286 154 51 chr21 24968573 24968748 -19938822 + L2 LINE L2 2553 2745 -569 278 337 114 42 chr21 24968937 24969165 -19938405 + L2 LINE L2 2929 3194 -119 2142 145 0 0 chr21 24969165 24969475 -19938095 - AluSx SINE Alu -2 310 1 278 337 114 42 chr21 24969475 24969605 -19937965 + L2 LINE L2 3194 3313 0 372 76 0 238 chr21 24969933 24970038 -19937532 + MADE1 DNA Mariner 1 80 0 1565 203 28 25 chr21 24971256 24971620 -19935950 - MLT1A1 LTR MaLR 0 365 1 1071 312 84 27 chr21 24971826 24972679 -19934891 - ERVL LTR ERVL -1118 4646 3397 406 294 46 17 chr21 24972863 24973230 -19934340 - LTR16B LTR ERVL -59 405 3 2069 117 31 0 chr21 24973308 24973598 -19933972 + AluSg SINE Alu 1 299 -11 416 204 1 53 chr21 24973648 24973780 -19933790 + MER45A DNA AcHobo 11 101 -1480 2521 60 0 0 chr21 24973780 24974079 -19933491 - AluY SINE Alu -12 299 1 416 204 1 53 chr21 24974079 24974154 -19933416 + MER45A DNA AcHobo 101 178 0 295 244 47 12 chr21 24974732 24974818 -19932752 + MER90-int LTR ERV1 4486 4574 -73 1674 231 40 29 chr21 24974955 24975521 -19932049 + MER90 LTR ERV1 1 614 0 200 341 143 0 chr21 24975599 24975690 -19931880 + L2 LINE L2 3207 3310 -3 1719 166 27 19 chr21 24975850 24976224 -19931346 + L1MB8 LINE L1 5781 6157 -21 217 268 24 0 chr21 24976227 24976309 -19931261 + (TA)n Simple_repeat Simple_repeat 1 84 0 422 325 170 3 chr21 24976337 24976620 -19930950 + L1ME4a LINE L1 5787 6116 -5 4311 65 2 2 chr21 24976840 24977397 -19930173 - L1PA5 LINE L1 -1 6153 5597 1633 157 4 4 chr21 24978224 24978472 -19929098 - AluJo SINE Alu -64 248 1 1281 195 56 12 chr21 24978580 24978936 -19928634 + MLT1A2 LTR MaLR 1 390 0 28 0 0 0 chr21 24979001 24979029 -19928541 + AT_rich Low_complexity Low_complexity 1 28 0 2022 140 0 3 chr21 24980419 24980712 -19926858 - AluSq SINE Alu -21 292 1 3302 133 6 8 chr21 24982168 24982701 -19924869 + L1PA13 LINE L1 5628 6159 -4 831 153 0 0 chr21 24982965 24983096 -19924474 - FLAM_C SINE Alu -2 131 1 851 272 67 30 chr21 24983165 24983882 -19923688 - HAL1 LINE L1 -697 1810 1032 496 252 231 28 chr21 24984346 24984783 -19922787 + L1MC4a LINE L1 5615 6140 -1668 607 277 136 8 chr21 24984826 24985209 -19922361 + L1M4 LINE L1 4399 4830 -1316 412 227 21 10 chr21 24985298 24985395 -19922175 + MLT1J2 LTR MaLR 82 179 -271 377 316 59 37 chr21 24985619 24985993 -19921577 - L1M4 LINE L1 -3655 2491 2110 218 205 0 0 chr21 24986139 24986178 -19921392 + (TATG)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr21 24987426 24987446 -19920124 + (CAA)n Simple_repeat Simple_repeat 2 21 0 27 62 0 0 chr21 24987683 24987731 -19919839 + AT_rich Low_complexity Low_complexity 1 48 0 1876 328 91 49 chr21 24987807 24990748 -19916822 - ERVL LTR ERVL -947 4580 1513 978 222 89 12 chr21 24991934 24992191 -19915379 - MLT1E LTR MaLR 0 593 317 1280 247 45 21 chr21 24992217 24992557 -19915013 + MLT2D LTR ERVL 53 410 -4 700 270 24 24 chr21 24992559 24992770 -19914800 - MLT1E LTR MaLR -382 211 1 1244 188 104 75 chr21 24993352 24993646 -19913924 - LTR8A LTR ERV1 0 727 366 2202 124 0 0 chr21 24993646 24993945 -19913625 + AluSc SINE Alu 1 299 -10 1244 188 104 75 chr21 24993945 24994134 -19913436 - LTR8A LTR ERV1 -361 366 184 505 152 20 30 chr21 24994166 24994265 -19913305 + MER4A LTR ERV1 1 98 -566 2018 109 3 22 chr21 24994267 24994617 -19912953 + MER4A LTR ERV1 263 664 0 752 163 82 0 chr21 24994622 24994757 -19912813 - LTR8 LTR ERV1 -545 146 1 630 234 34 57 chr21 24995629 24995687 -19911883 + MER45A DNA AcHobo 8 66 -1515 333 0 0 0 chr21 24995687 24995724 -19911846 + (CA)n Simple_repeat Simple_repeat 1 37 0 630 234 34 57 chr21 24995724 24995840 -19911730 + MER45A DNA AcHobo 66 178 0 285 29 0 0 chr21 24996405 24996439 -19911131 + (TG)n Simple_repeat Simple_repeat 1 34 0 2124 105 0 3 chr21 24996439 24996719 -19910851 - AluSg SINE Alu -31 279 1 1756 133 19 0 chr21 24996892 24997214 -19910356 - Tigger4(Zombi) DNA MER2_type 0 2731 8 1750 92 142 0 chr21 24997249 24997509 -19910061 + AluSx SINE Alu 1 297 -5 474 49 0 0 chr21 24997581 24997642 -19909928 + (CA)n Simple_repeat Simple_repeat 2 62 0 402 57 0 0 chr21 24999075 24999128 -19908442 + (CA)n Simple_repeat Simple_repeat 2 54 0 2058 129 0 0 chr21 24999145 24999432 -19908138 - AluY SINE Alu -24 287 1 1569 107 12 0 chr21 24999440 24999684 -19907886 - L1MA4 LINE L1 -5 6295 6049 23 33 0 0 chr21 24999746 24999776 -19907794 + AT_rich Low_complexity Low_complexity 1 30 0 275 153 66 7 chr21 24999848 24999985 -19907585 + (TA)n Simple_repeat Simple_repeat 1 145 0 21 57 0 0 chr21 25000036 25000071 -19907499 + AT_rich Low_complexity Low_complexity 1 35 0 1607 186 3 44 chr21 25000333 25000651 -19906919 + AluJo SINE Alu 1 305 -7 270 116 0 0 chr21 25001706 25001749 -19905821 + (TG)n Simple_repeat Simple_repeat 1 43 0 2631 42 0 0 chr21 25001857 25002165 -19905405 + AluY SINE Alu 1 308 -3 685 302 12 49 chr21 25002222 25002467 -19905103 - L2 LINE L2 -383 2931 2696 823 162 66 0 chr21 25002586 25002753 -19904817 - MER2 DNA MER2_type -135 210 33 1738 311 123 10 chr21 25002811 25003540 -19904030 - L2 LINE L2 -675 2639 1828 355 302 99 42 chr21 25003545 25003757 -19903813 + L1MEd LINE L1 3 226 -5893 917 114 0 0 chr21 25003765 25003897 -19903673 - AluSg/x SINE Alu 0 310 179 384 355 67 25 chr21 25003971 25004328 -19903242 + L1MEd LINE L1 2566 2943 -3186 478 320 30 9 chr21 25004474 25004684 -19902886 - MER20B DNA MER1_type -2 217 1 577 308 64 66 chr21 25004684 25005195 -19902375 + L1MEd LINE L1 3060 3570 -2559 2112 120 0 3 chr21 25005195 25005494 -19902076 - AluY SINE Alu -11 300 3 577 308 64 66 chr21 25005494 25006110 -19901460 + L1MEd LINE L1 3570 4185 -1944 183 0 135 0 chr21 25006293 25006330 -19901240 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 344 82 0 20 chr21 25008185 25008234 -19899336 - MLT2C2 LTR ERVL 0 464 417 297 0 0 0 chr21 25008263 25008296 -19899274 + (CA)n Simple_repeat Simple_repeat 2 34 0 565 146 0 0 chr21 25008296 25008378 -19899192 - Tigger7 DNA MER2_type -2 2485 2404 2743 208 10 8 chr21 25008387 25008906 -19898664 - Tigger7 DNA MER2_type -1967 520 1 600 241 109 96 chr21 25008984 25009361 -19898209 - MLT2B1 LTR ERVL -53 467 86 1903 152 10 7 chr21 25010140 25010443 -19897127 - AluJb SINE Alu -8 304 1 489 211 34 75 chr21 25011970 25012092 -19895478 - MLT1H LTR MaLR -3 546 429 2190 130 3 0 chr21 25012092 25012399 -19895171 - AluSx SINE Alu -4 308 1 489 211 34 75 chr21 25012399 25012423 -19895147 - MLT1H LTR MaLR -120 429 406 852 287 81 48 chr21 25012531 25012612 -19894958 - MLT1H LTR MaLR -201 348 271 3132 189 14 2 chr21 25012612 25013163 -19894407 - MER68 LTR ERV1 0 562 5 852 287 81 48 chr21 25013163 25013416 -19894154 - MLT1H LTR MaLR -278 271 3 22 0 0 0 chr21 25014727 25014749 -19892821 + AT_rich Low_complexity Low_complexity 1 22 0 322 290 78 60 chr21 25014760 25014977 -19892593 - MIR SINE MIR -18 244 24 365 272 128 43 chr21 25015980 25016215 -19891355 - MIR SINE MIR 0 262 8 204 225 0 0 chr21 25016600 25016640 -19890930 + T-rich Low_complexity Low_complexity 4 43 0 23 33 0 0 chr21 25017862 25017892 -19889678 + AT_rich Low_complexity Low_complexity 1 30 0 2056 130 33 0 chr21 25018124 25018423 -19889147 + AluSq SINE Alu 1 309 -4 208 389 8 8 chr21 25018549 25018675 -19888895 - L3 LINE CR1 -234 1343 1218 2294 60 0 0 chr21 25019725 25020008 -19887562 - AluY SINE Alu -7 304 22 999 111 7 0 chr21 25020853 25020988 -19886582 - AluSq/x SINE Alu -177 136 1 2522 62 0 7 chr21 25020996 25021302 -19886268 - AluSc SINE Alu -5 304 1 779 177 130 16 chr21 25021608 25021800 -19885770 + MER96B DNA MER1_type? 22 235 -182 272 315 80 42 chr21 25022244 25022482 -19885088 + L2 LINE L2 2017 2263 -1051 2141 100 3 17 chr21 25022621 25022921 -19884649 + AluSx SINE Alu 1 296 -16 2316 97 3 0 chr21 25023036 25023346 -19884224 - AluY SINE Alu 0 311 1 27 0 0 0 chr21 25023579 25023606 -19883964 + AT_rich Low_complexity Low_complexity 1 27 0 4929 45 0 0 chr21 25023606 25024206 -19883364 - L1PA4 LINE L1 -3 6152 5553 2076 280 97 52 chr21 25024275 25025155 -19882415 - L2 LINE L2 -7 3306 2383 188 0 74 0 chr21 25025155 25025182 -19882388 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2076 280 97 52 chr21 25025182 25025427 -19882143 - L2 LINE L2 -930 2383 2150 2065 106 35 0 chr21 25025432 25025715 -19881855 - AluSx SINE Alu -19 293 1 4937 135 4 14 chr21 25025742 25026549 -19881021 - L1PA16 LINE L1 -1 6165 5367 524 212 58 0 chr21 25026576 25026713 -19880857 - L2 LINE L2 -1232 2082 1938 1489 75 0 37 chr21 25028538 25028752 -19878818 + L1PA13 LINE L1 5939 6144 -19 1333 234 10 0 chr21 25028839 25029134 -19878436 - AluJb SINE Alu -10 302 5 214 339 141 5 chr21 25029490 25029682 -19877888 + MIR SINE MIR 2 219 -43 2116 194 55 26 chr21 25029720 25030211 -19877359 - MLT1D LTR MaLR 0 505 1 190 260 0 0 chr21 25030497 25030547 -19877023 - L2 LINE L2 -1 3312 3263 21 0 0 0 chr21 25031284 25031305 -19876265 + AT_rich Low_complexity Low_complexity 1 21 0 1961 152 21 0 chr21 25033906 25034196 -19873374 - AluSx SINE Alu -16 296 1 502 324 126 0 chr21 25035023 25035245 -19872325 - MIR SINE MIR 0 262 13 1957 124 154 3 chr21 25035338 25035702 -19871868 + MSTA LTR MaLR 1 419 -9 431 258 127 27 chr21 25037672 25037893 -19869677 - MLT1J LTR MaLR -22 489 247 234 0 0 0 chr21 25038492 25038518 -19869052 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr21 25041126 25041148 -19866422 + AT_rich Low_complexity Low_complexity 1 22 0 187 281 21 83 chr21 25041886 25041982 -19865588 + MIR SINE MIR 102 191 -71 2682 160 69 2 chr21 25043862 25044398 -19863172 - L1MB3 LINE L1 0 6183 5612 2025 150 25 74 chr21 25044831 25045264 -19862306 - MLT2D LTR ERVL 0 414 3 1563 189 26 0 chr21 25046119 25046421 -19861149 + AluJb SINE Alu 1 310 -2 29 70 0 0 chr21 25047292 25047349 -19860221 + AT_rich Low_complexity Low_complexity 1 57 0 507 118 0 0 chr21 25047515 25047600 -19859970 + (TG)n Simple_repeat Simple_repeat 2 86 0 192 254 0 0 chr21 25047600 25047659 -19859911 + (CATA)n Simple_repeat Simple_repeat 2 60 0 270 164 0 0 chr21 25047662 25047717 -19859853 - L1MC4 LINE L1 -1339 6703 6649 288 0 0 0 chr21 25047717 25047749 -19859821 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 67 0 0 chr21 25048106 25048151 -19859419 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr21 25048358 25048382 -19859188 + AT_rich Low_complexity Low_complexity 1 24 0 30 77 0 0 chr21 25048420 25048485 -19859085 + AT_rich Low_complexity Low_complexity 1 65 0 330 206 34 34 chr21 25048491 25048666 -19858904 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 38 22 0 0 chr21 25048669 25048714 -19858856 + AT_rich Low_complexity Low_complexity 1 45 0 336 162 58 16 chr21 25048745 25049066 -19858504 + (TA)n Simple_repeat Simple_repeat 1 334 0 258 350 5 16 chr21 25050166 25050289 -19857281 - MIR3 SINE MIR -35 173 49 588 284 92 23 chr21 25050987 25051205 -19856365 - MIR SINE MIR -20 242 10 907 281 49 18 chr21 25051218 25051606 -19855964 - MARNA DNA Mariner -31 555 156 228 196 11 54 chr21 25052264 25052356 -19855214 + CT-rich Low_complexity Low_complexity 3 90 0 189 147 0 0 chr21 25052525 25052559 -19855011 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2095 125 49 30 chr21 25054246 25054614 -19852956 + THE1C LTR MaLR 1 375 0 219 69 0 0 chr21 25055037 25055066 -19852504 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 269 214 139 65 chr21 25055285 25055486 -19852084 - L1MC5 LINE L1 -32 7929 7714 1955 152 88 42 chr21 25055697 25055995 -19851575 - MSTA LTR MaLR 0 428 104 2472 59 0 28 chr21 25055995 25056315 -19851255 + AluY SINE Alu 1 311 0 1955 152 88 42 chr21 25056315 25056425 -19851145 - MSTA LTR MaLR -324 104 1 1997 156 32 58 chr21 25057545 25058013 -19849557 - MSTB2 LTR MaLR 0 457 2 411 263 90 51 chr21 25058013 25058160 -19849410 + MIR SINE MIR 55 210 -52 1921 127 41 7 chr21 25058189 25058480 -19849090 + AluSx SINE Alu 1 301 -11 227 217 67 0 chr21 25058575 25058635 -19848935 - L1ME LINE L1 -428 5693 5630 180 250 62 0 chr21 25058697 25058745 -19848825 - L2 LINE L2 -43 3229 3179 229 286 189 85 chr21 25058896 25059101 -19848469 - L2 LINE L2 -360 2954 2772 614 126 0 0 chr21 25059101 25059196 -19848374 + L1PB4 LINE L1 6050 6144 -12 229 286 189 85 chr21 25059196 25059557 -19848013 - L2 LINE L2 -542 2772 2329 309 300 118 59 chr21 25059582 25059869 -19847701 - L1ME LINE L1 -593 5569 5266 203 125 25 0 chr21 25059989 25060029 -19847541 + (TG)n Simple_repeat Simple_repeat 2 42 0 1000 226 4 38 chr21 25060133 25060398 -19847172 + MLT2B1 LTR ERVL 1 256 -264 274 226 0 0 chr21 25060523 25060585 -19846985 + MLT2B1 LTR ERVL 375 436 -84 322 35 0 69 chr21 25060590 25060648 -19846922 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 181 330 148 26 chr21 25060735 25060850 -19846720 + L2 LINE L2 2446 2574 -740 269 162 29 29 chr21 25060851 25060919 -19846651 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 313 122 0 0 chr21 25060919 25060975 -19846595 + MLT2B1 LTR ERVL 398 520 0 22 35 0 0 chr21 25061622 25061651 -19845919 + AT_rich Low_complexity Low_complexity 1 29 0 358 311 117 22 chr21 25061740 25062013 -19845557 - L1MEc LINE L1 -3918 2478 2180 198 0 0 0 chr21 25062414 25062436 -19845134 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 466 280 165 54 chr21 25062456 25063021 -19844549 + L2 LINE L2 2450 3096 -217 3051 287 30 38 chr21 25063787 25065473 -19842097 + L1PBa LINE L1 3 1644 -5219 1970 100 45 24 chr21 25066293 25066624 -19840946 + THE1B LTR MaLR 1 338 -26 838 230 13 88 chr21 25067090 25067329 -19840241 + MER58A DNA MER1_type 4 224 0 25 83 0 0 chr21 25067662 25067722 -19839848 + AT_rich Low_complexity Low_complexity 1 60 0 555 252 43 79 chr21 25069997 25070275 -19837295 + L2 LINE L2 3046 3313 0 2186 104 30 0 chr21 25072505 25072802 -19834768 + AluSx SINE Alu 1 306 -6 259 302 101 22 chr21 25080596 25080735 -19826835 - MIR3 SINE MIR -22 186 37 195 162 0 0 chr21 25080966 25081003 -19826567 + T-rich Low_complexity Low_complexity 4 40 0 210 248 79 99 chr21 25081810 25081911 -19825659 + L3 LINE CR1 1411 1509 -68 340 303 84 19 chr21 25082404 25082559 -19825011 + MIR SINE MIR 8 172 -90 844 236 77 0 chr21 25082979 25083187 -19824383 + MER58A DNA MER1_type 1 224 0 2075 163 134 48 chr21 25083632 25084111 -19823459 - MLT2B1 LTR ERVL 0 520 1 432 267 186 6 chr21 25084687 25084859 -19822711 - MIR SINE MIR 0 262 60 253 275 200 25 chr21 25084938 25085058 -19822512 + MIR3 SINE MIR 15 155 -53 1453 165 56 0 chr21 25085469 25085736 -19821834 + MER7A DNA MER2_type 1 280 -66 5749 52 52 11 chr21 25085736 25086485 -19821085 + LTR17 LTR ERV1 1 780 0 13738 50 11 38 chr21 25086485 25088400 -19819170 + HERV17 LTR ERV1 1 1865 -6761 * 28749 49 7 2 chr21 25088396 25092023 -19815547 + HERV17 LTR ERV1 1679 5322 -3304 4240 65 5 2 chr21 25092014 25092571 -19814999 + HERV17 LTR ERV1 8068 8626 0 * 5623 57 1 1 chr21 25092571 25093306 -19814264 + LTR17 LTR ERV1 1 780 0 368 221 0 0 chr21 25093308 25093376 -19814194 + MER7A DNA MER2_type 269 336 0 196 259 35 0 chr21 25093557 25093615 -19813955 - MIR SINE MIR -8 254 195 21 0 0 0 chr21 25094454 25094475 -19813095 + AT_rich Low_complexity Low_complexity 1 21 0 2107 114 7 13 chr21 25094605 25094903 -19812667 - AluSc SINE Alu -11 298 3 230 263 13 13 chr21 25095002 25095078 -19812492 + T-rich Low_complexity Low_complexity 5 80 0 210 375 0 0 chr21 25095105 25095161 -19812409 - L2 LINE L2 -16 3256 3201 30 0 0 0 chr21 25095962 25095992 -19811578 + AT_rich Low_complexity Low_complexity 1 30 0 2486 87 0 0 chr21 25096028 25096339 -19811231 - AluY SINE Alu 0 311 1 351 283 169 12 chr21 25097080 25097246 -19810324 - MIR SINE MIR -1 261 70 765 194 59 125 chr21 25097251 25097555 -19810015 + MLT1I LTR MaLR 5 288 -121 926 219 5 9 chr21 25097580 25097787 -19809783 - MLT1A1 LTR MaLR -104 261 56 1874 139 44 40 chr21 25097787 25098311 -19809259 + MER51A LTR ERV1 1 618 -16 349 109 0 31 chr21 25098338 25098402 -19809168 - MLT1A1 LTR MaLR -303 62 1 582 283 195 10 chr21 25098822 25099130 -19808440 + L1MCc LINE L1 17 381 -6042 941 233 37 22 chr21 25099366 25099637 -19807933 - MLT2D LTR ERVL -138 276 2 303 71 0 0 chr21 25099647 25099689 -19807881 + (TG)n Simple_repeat Simple_repeat 1 42 0 863 160 0 0 chr21 25099689 25099814 -19807756 - AluJb SINE Alu -33 279 155 218 274 24 12 chr21 25100034 25100118 -19807452 + (TATG)n Simple_repeat Simple_repeat 4 88 0 183 381 60 12 chr21 25100754 25100838 -19806732 + L2 LINE L2 3117 3204 -68 294 271 42 30 chr21 25101160 25101326 -19806244 + L1MCc LINE L1 818 985 -5946 382 302 81 57 chr21 25101529 25101900 -19805670 + L1MCc LINE L1 1257 1636 -5295 328 259 29 0 chr21 25101961 25102100 -19805470 + L1MCc LINE L1 1771 1913 -5018 3088 122 15 66 chr21 25102190 25102732 -19804838 - MER75 DNA T2_type 0 514 1 405 237 56 2 chr21 25102795 25102963 -19804607 + L1MCc LINE L1 2199 2441 -861 6314 121 28 30 chr21 25102991 25104000 -19803570 - LTR13 LTR ERVK 0 1007 1 371 296 43 70 chr21 25104079 25104333 -19803237 + L1M4 LINE L1 3595 3841 -2305 754 161 0 29 chr21 25104333 25104470 -19803100 + FLAM_C SINE Alu 1 133 0 371 296 43 70 chr21 25104470 25104516 -19803054 + L1M4 LINE L1 3841 3887 -2259 491 128 12 12 chr21 25104787 25104873 -19802697 - MSTB LTR MaLR -1 425 340 715 87 0 19 chr21 25104873 25104977 -19802593 - AluY SINE Alu -11 300 199 1783 146 24 39 chr21 25104982 25105317 -19802253 - MSTB LTR MaLR -96 330 1 630 313 18 15 chr21 25105337 25105672 -19801898 - L1M4 LINE L1 -901 5245 4910 803 265 141 24 chr21 25105780 25106241 -19801329 - MLT1G LTR MaLR -57 533 19 1964 75 0 0 chr21 25106242 25106497 -19801073 - L1PA7 LINE L1 -2 6152 5898 1197 276 11 3 chr21 25106599 25106965 -19800605 + L1ME1 LINE L1 5583 5951 -215 2020 193 83 23 chr21 25106968 25107449 -19800121 - MLT2B2 LTR ERVL 0 515 6 324 272 30 19 chr21 25107453 25107628 -19799942 + L1ME1 LINE L1 5950 6128 -50 1571 229 25 82 chr21 25107637 25107892 -19799678 + L1MC4a LINE L1 6333 6547 -1293 342 67 0 0 chr21 25107892 25107937 -19799633 + (TG)n Simple_repeat Simple_repeat 1 45 0 1571 229 25 82 chr21 25107937 25108231 -19799339 + L1MC4a LINE L1 6547 6856 -984 222 293 144 46 chr21 25108437 25108700 -19798870 - L3b LINE CR1 -181 1402 1114 21 71 0 0 chr21 25109030 25109072 -19798498 + AT_rich Low_complexity Low_complexity 1 42 0 34 42 0 0 chr21 25109286 25109334 -19798236 + AT_rich Low_complexity Low_complexity 1 48 0 1015 183 89 0 chr21 25109374 25109620 -19797950 + L1MD3 LINE L1 7728 7995 0 23 33 0 0 chr21 25109743 25109773 -19797797 + AT_rich Low_complexity Low_complexity 1 30 0 2239 113 0 16 chr21 25110765 25111075 -19796495 - AluSx SINE Alu -7 305 1 30 0 0 0 chr21 25112103 25112133 -19795437 + AT_rich Low_complexity Low_complexity 1 30 0 1835 141 7 3 chr21 25114031 25114314 -19793256 + AluSx SINE Alu 21 304 -8 713 173 42 60 chr21 25114315 25114483 -19793087 + AluSg/x SINE Alu 135 299 -13 1934 159 14 32 chr21 25115368 25115738 -19791832 + MLT1A1 LTR MaLR 1 363 -2 310 332 71 37 chr21 25116198 25116466 -19791104 + MLT1I LTR MaLR 127 403 -6 1913 141 49 35 chr21 25117430 25117800 -19789770 + THE1C LTR MaLR 1 375 0 388 332 168 50 chr21 25118370 25118786 -19788784 - L2 LINE L2 -1 3271 2807 537 339 46 66 chr21 25118856 25119251 -19788319 - L2 LINE L2 -505 2809 2423 203 179 51 0 chr21 25121479 25121518 -19786052 + MIR SINE MIR 36 76 -186 318 254 8 34 chr21 25121674 25121792 -19785778 + (TATG)n Simple_repeat Simple_repeat 4 118 0 775 188 12 47 chr21 25121793 25121963 -19785607 - AluJb SINE Alu -29 283 120 1808 163 46 35 chr21 25122721 25123276 -19784294 + MLT2A2 LTR ERVL 1 554 0 208 139 0 0 chr21 25123476 25123512 -19784058 + (TA)n Simple_repeat Simple_repeat 2 37 0 971 189 38 38 chr21 25123917 25124235 -19783335 + MER33 DNA MER1_type 7 324 0 266 308 55 0 chr21 25124811 25124902 -19782668 - L2 LINE L2 -49 3264 3169 335 311 95 53 chr21 25124911 25125268 -19782302 + LTR16C LTR ERVL 111 482 -9 216 320 197 0 chr21 25125627 25125774 -19781796 - L2 LINE L2 -939 2375 2200 249 297 53 85 chr21 25125775 25126210 -19781360 - LTR67 LTR ERVL 0 557 137 510 186 0 18 chr21 25126245 25126358 -19781212 - L1ME2 LINE L1 -287 5946 5836 1355 260 68 28 chr21 25126398 25126587 -19780983 - L1ME2 LINE L1 -1086 5129 4949 333 174 0 0 chr21 25126587 25126656 -19780914 + L1MA7 LINE L1 6223 6291 0 1355 260 68 28 chr21 25126656 25127582 -19779988 - L1ME2 LINE L1 -1266 4949 3757 7537 21 11 0 chr21 25127582 25128676 -19778894 - L1PA3 LINE L1 0 6155 5049 7619 38 0 0 chr21 25128676 25129670 -19777900 + L1P LINE L1 2540 3533 -2613 506 203 52 33 chr21 25129673 25129826 -19777744 - L1ME2 LINE L1 -2456 3759 3604 929 292 121 39 chr21 25129848 25129953 -19777617 - L1ME2 LINE L1 -4818 1397 1302 1967 156 35 24 chr21 25129953 25130324 -19777246 - THE1C LTR MaLR 0 375 1 929 292 121 39 chr21 25130324 25131481 -19776089 - L1ME2 LINE L1 -4913 1302 64 2355 92 15 6 chr21 25133386 25133722 -19773848 + L1MA1 LINE L1 5960 6298 -4 223 246 16 16 chr21 25135484 25135545 -19772025 - MIR SINE MIR -114 148 88 2330 107 0 0 chr21 25135820 25136120 -19771450 + AluSx SINE Alu 1 300 -12 848 184 0 7 chr21 25136386 25136538 -19771032 + AluSx SINE Alu 5 155 -157 556 181 18 82 chr21 25136767 25136876 -19770694 - MER5B DNA MER1_type -18 160 46 185 0 40 0 chr21 25136876 25136901 -19770669 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4797 139 25 15 chr21 25136903 25137193 -19770377 - L1MC1 LINE L1 -6 6327 6041 2176 123 19 27 chr21 25137193 25137560 -19770010 + THE1B LTR MaLR 1 364 0 4797 139 25 15 chr21 25137560 25138080 -19769490 - L1MC1 LINE L1 -292 6041 5509 556 181 18 82 chr21 25138080 25138138 -19769432 - MER5B DNA MER1_type -133 45 1 22 0 0 0 chr21 25138388 25138410 -19769160 + AT_rich Low_complexity Low_complexity 1 22 0 232 299 31 55 chr21 25138573 25138700 -19768870 + MIR3 SINE MIR 84 207 -1 23 54 0 0 chr21 25138984 25139021 -19768549 + AT_rich Low_complexity Low_complexity 1 37 0 210 118 0 0 chr21 25139296 25139330 -19768240 + (TG)n Simple_repeat Simple_repeat 2 35 0 277 214 11 22 chr21 25140289 25140378 -19767192 + CT-rich Low_complexity Low_complexity 3 90 0 679 252 62 29 chr21 25141397 25141607 -19765963 - MER20 DNA MER1_type -2 217 1 336 338 144 19 chr21 25141865 25142128 -19765442 - L3 LINE CR1 -186 1391 1096 235 258 121 53 chr21 25142167 25142299 -19765271 - MLT1L LTR MaLR -4 611 471 21 0 0 0 chr21 25143050 25143071 -19764499 + AT_rich Low_complexity Low_complexity 1 21 0 322 73 0 0 chr21 25143963 25144004 -19763566 + U2 snRNA snRNA 1 41 -147 865 279 143 29 chr21 25144285 25144662 -19762908 + MLT1H1 LTR MaLR 136 555 0 2112 167 51 17 chr21 25145027 25145536 -19762034 + LTR27 LTR ERV1 2 501 0 1751 222 74 50 chr21 25145644 25146258 -19761312 - MLT1E2 LTR MaLR -3 623 2 820 290 168 34 chr21 25146519 25147225 -19760345 - L2 LINE L2 -2 3311 2517 23 86 0 0 chr21 25152352 25152410 -19755160 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr21 25152746 25152767 -19754803 + AT_rich Low_complexity Low_complexity 1 21 0 564 274 18 0 chr21 25156346 25156510 -19751060 + MER5B DNA MER1_type 7 173 -5 1048 211 46 5 chr21 25157341 25157559 -19750011 + AluJo SINE Alu 55 281 -31 301 292 7 95 chr21 25157588 25157690 -19749880 - MIR SINE MIR -65 143 54 1955 138 17 0 chr21 25157690 25157986 -19749584 + AluSx SINE Alu 1 301 -11 301 292 7 95 chr21 25157986 25158020 -19749550 - MIR SINE MIR -154 54 19 209 242 48 16 chr21 25158452 25158514 -19749056 + L2 LINE L2 3210 3273 -40 1449 287 104 22 chr21 25158578 25159336 -19748234 - L2 LINE L2 -145 3168 2360 270 380 6 48 chr21 25159366 25159532 -19748038 - MIR SINE MIR -50 212 54 592 108 81 0 chr21 25159901 25160049 -19747521 + CT-rich Low_complexity Low_complexity 2 161 0 229 310 88 9 chr21 25160098 25160211 -19747359 + MIR3 SINE MIR 66 187 -21 203 234 31 0 chr21 25162026 25162090 -19745480 + (TA)n Simple_repeat Simple_repeat 1 66 0 2359 90 0 0 chr21 25162355 25162644 -19744926 - AluSc SINE Alu -20 289 1 304 252 55 8 chr21 25163104 25163231 -19744339 - L1ME4a LINE L1 -3 6118 5986 2010 126 3 33 chr21 25163711 25164013 -19743557 + AluSg SINE Alu 1 293 -17 204 40 0 0 chr21 25166407 25166432 -19741138 + (TAA)n Simple_repeat Simple_repeat 1 25 0 221 357 0 0 chr21 25166596 25166666 -19740904 - L2 LINE L2 -3 3310 3241 597 256 0 26 chr21 25167202 25167358 -19740212 - MIR SINE MIR -32 230 79 195 338 0 0 chr21 25167536 25167607 -19739963 + MIR SINE MIR 72 142 -120 21 0 0 0 chr21 25168682 25168703 -19738867 + AT_rich Low_complexity Low_complexity 1 21 0 2459 67 0 16 chr21 25169257 25169569 -19738001 + AluSq SINE Alu 1 307 -6 2187 119 0 3 chr21 25169825 25170128 -19737442 - AluSx SINE Alu -8 304 3 21 36 0 0 chr21 25173021 25173049 -19734521 + AT_rich Low_complexity Low_complexity 1 28 0 223 410 19 9 chr21 25175228 25175333 -19732237 + L2 LINE L2 3160 3265 -7 2180 122 0 3 chr21 25178720 25179031 -19728539 - AluSq SINE Alu 0 313 4 643 286 21 34 chr21 25180136 25180374 -19727196 + MIR SINE MIR 28 262 0 322 97 0 32 chr21 25180436 25180498 -19727072 + (TA)n Simple_repeat Simple_repeat 2 61 0 225 0 0 0 chr21 25180499 25180524 -19727046 + (GA)n Simple_repeat Simple_repeat 1 25 0 861 204 87 10 chr21 25180524 25180657 -19726913 - AluJo SINE Alu -39 273 119 236 77 26 0 chr21 25180657 25180696 -19726874 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 861 204 87 10 chr21 25180696 25180758 -19726812 - AluJo SINE Alu -193 119 63 1249 156 0 24 chr21 25182164 25182375 -19725195 - AluJo SINE Alu -21 291 86 1648 102 0 0 chr21 25182794 25183009 -19724561 + AluSq SINE Alu 99 313 0 180 326 102 20 chr21 25184294 25184392 -19723178 - L2 LINE L2 -12 3301 3196 285 330 28 9 chr21 25184470 25184576 -19722994 - MIR SINE MIR -63 145 38 387 323 23 0 chr21 25185125 25185255 -19722315 - MIR SINE MIR -73 189 57 187 303 45 30 chr21 25187260 25187326 -19720244 + L2 LINE L2 3235 3301 -12 202 225 14 14 chr21 25188631 25188702 -19718868 + (TA)n Simple_repeat Simple_repeat 1 71 0 389 20 20 0 chr21 25188729 25188779 -19718791 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 248 289 82 44 chr21 25189934 25190069 -19717501 - L2 LINE L2 -5 3308 3169 308 275 11 11 chr21 25190551 25190642 -19716928 + MIR3 SINE MIR 93 183 -25 204 250 28 42 chr21 25191020 25191092 -19716478 + L2 LINE L2 2446 2516 -798 186 318 135 16 chr21 25191118 25191244 -19716326 + L2 LINE L2 2590 2730 -584 936 243 0 81 chr21 25191716 25192049 -19715521 + MLT1A2 LTR MaLR 69 374 0 351 297 103 5 chr21 25193125 25193320 -19714250 - LTR50 LTR ERVL -581 214 1 28 0 0 0 chr21 25194720 25194748 -19712822 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr21 25194941 25194987 -19712583 + (A)n Simple_repeat Simple_repeat 1 46 0 308 296 108 83 chr21 25197507 25197879 -19709691 - L1M2 LINE L1 -6119 730 350 382 339 65 12 chr21 25201211 25201379 -19706191 - MIR3 SINE MIR -15 193 17 191 344 70 47 chr21 25201392 25201520 -19706050 - L2 LINE L2 0 3272 3142 408 314 9 0 chr21 25204852 25204957 -19702613 + L2 LINE L2 3137 3242 -30 302 262 132 65 chr21 25205293 25205712 -19701858 - MLT1J2 LTR MaLR 0 446 5 524 321 50 14 chr21 25206643 25206861 -19700709 + MIR SINE MIR 37 262 0 234 188 0 0 chr21 25207393 25207457 -19700113 + L1MC4 LINE L1 6640 6703 -1339 1020 152 0 0 chr21 25207457 25207704 -19699866 + (TA)n Simple_repeat Simple_repeat 1 247 0 1814 122 42 68 chr21 25207832 25208217 -19699353 + THE1C LTR MaLR 1 375 0 234 344 19 7 chr21 25209104 25209258 -19698312 + Tigger2 DNA MER2_type 1176 1331 -1387 1074 224 118 9 chr21 25209528 25209876 -19697694 - Charlie1b DNA MER1_type -1 522 137 328 206 15 0 chr21 25209977 25210045 -19697525 + MER5A DNA MER1_type 33 101 -88 1728 181 7 10 chr21 25210641 25210940 -19696630 - AluJo SINE Alu -12 300 3 27 49 0 0 chr21 25211054 25211095 -19696475 + AT_rich Low_complexity Low_complexity 1 41 0 189 94 0 0 chr21 25211301 25211333 -19696237 + (A)n Simple_repeat Simple_repeat 1 32 0 407 299 156 29 chr21 25211829 25211892 -19695678 + L1MEd LINE L1 819 873 -5246 2596 62 0 0 chr21 25211892 25212198 -19695372 + AluY SINE Alu 1 306 -5 407 299 156 29 chr21 25212198 25212512 -19695058 + L1MEd LINE L1 873 1244 -4875 242 297 68 0 chr21 25212630 25212748 -19694822 + L1MEd LINE L1 1433 1558 -4752 1701 229 43 19 chr21 25212991 25213475 -19694095 + L1MC3 LINE L1 6891 7386 -399 549 318 17 31 chr21 25214556 25214688 -19692882 - MIR SINE MIR -3 259 132 2518 113 14 0 chr21 25214688 25215058 -19692512 + THE1C LTR MaLR 1 375 0 549 318 17 31 chr21 25215058 25215186 -19692384 - MIR SINE MIR -130 132 4 234 275 38 46 chr21 25216383 25216514 -19691056 - HAL1 LINE L1 -110 2397 2268 256 317 122 0 chr21 25216621 25216744 -19690826 - L2 LINE L2 -1899 1415 1278 550 356 114 42 chr21 25217868 25218418 -19689152 + L2 LINE L2 2387 2976 -338 818 244 92 68 chr21 25218646 25219060 -19688510 - MLT1D LTR MaLR 0 505 82 3826 203 112 90 chr21 25219136 25220478 -19687092 - MLT1D-int LTR MaLR 0 1371 1 760 55 28 0 chr21 25220533 25220642 -19686928 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 706 239 32 102 chr21 25220718 25220970 -19686600 - MLT2C1 LTR ERVL -51 346 127 1790 146 14 34 chr21 25220970 25221264 -19686306 - AluJb SINE Alu -24 288 1 706 239 32 102 chr21 25221264 25221383 -19686187 - MLT2C1 LTR ERVL -270 127 1 1903 134 8 0 chr21 25222247 25222515 -19685055 + AluSx SINE Alu 23 292 -20 1879 120 11 21 chr21 25222873 25223156 -19684414 - AluSq SINE Alu -33 280 1 29 60 0 0 chr21 25223859 25223909 -19683661 + AT_rich Low_complexity Low_complexity 1 50 0 341 264 24 16 chr21 25224871 25224996 -19682574 - LTR33 LTR ERVL -2 519 394 1919 184 22 17 chr21 25225246 25225648 -19681922 - MER47B DNA MER2_type 0 418 15 332 247 0 0 chr21 25225661 25225738 -19681832 - LTR33 LTR ERVL -431 90 14 709 203 10 78 chr21 25226049 25226241 -19681329 + MER8 DNA MER2_type 1 179 -60 338 194 0 42 chr21 25226208 25226280 -19681290 + MER2 DNA MER2_type 277 345 0 * 235 318 5 30 chr21 25226484 25226594 -19680976 - MER5B DNA MER1_type -59 130 19 25 65 0 0 chr21 25226856 25226902 -19680668 + AT_rich Low_complexity Low_complexity 1 46 0 347 216 14 14 chr21 25226912 25227051 -19680519 + (TA)n Simple_repeat Simple_repeat 2 140 0 27 87 0 0 chr21 25227222 25227291 -19680279 + AT_rich Low_complexity Low_complexity 1 69 0 84 20 0 0 chr21 25227700 25227798 -19679772 + AT_rich Low_complexity Low_complexity 1 98 0 401 286 146 37 chr21 25228621 25228915 -19678655 - LTR16A1 LTR ERVL -117 340 15 291 190 0 0 chr21 25229044 25229102 -19678468 + (TATG)n Simple_repeat Simple_repeat 2 59 0 206 200 0 0 chr21 25229116 25229151 -19678419 + (CA)n Simple_repeat Simple_repeat 2 36 0 2652 45 0 0 chr21 25229226 25229536 -19678034 - AluY SINE Alu -1 310 1 2076 124 13 61 chr21 25230924 25231318 -19676252 - THE1C LTR MaLR 0 375 1 3689 150 13 2 chr21 25231701 25232308 -19675262 + L1PA15 LINE L1 5550 6163 -2 1514 189 18 14 chr21 25232337 25232640 -19674930 + AluJo SINE Alu 1 304 0 400 309 112 0 chr21 25232727 25232905 -19674665 - MIR SINE MIR -3 259 62 2225 134 25 6 chr21 25233915 25234272 -19673298 - THE1B LTR MaLR 0 364 1 285 168 37 0 chr21 25234479 25234553 -19673017 - L1MC4 LINE L1 -4 8038 7723 2022 236 53 31 chr21 25234566 25235172 -19672398 - L1MC4 LINE L1 -178 7864 7246 332 339 139 35 chr21 25235363 25235815 -19671755 - L1 LINE L1 -1977 4169 3671 403 287 31 16 chr21 25235908 25236037 -19671533 + MER69A DNA AcHobo 39 169 -8 214 256 221 0 chr21 25236435 25236521 -19671049 + L2 LINE L2 3203 3307 -6 36 0 0 0 chr21 25236692 25236728 -19670842 + AT_rich Low_complexity Low_complexity 1 36 0 33 85 0 0 chr21 25236846 25236928 -19670642 + AT_rich Low_complexity Low_complexity 1 82 0 2182 100 19 3 chr21 25237125 25237444 -19670126 - L1PB2 LINE L1 -3 6148 5825 2037 136 27 6 chr21 25239290 25239621 -19667949 + THE1B LTR MaLR 1 338 -26 230 284 18 64 chr21 25240004 25240113 -19667457 + MIR SINE MIR 77 180 -82 614 281 147 43 chr21 25240220 25240662 -19666908 + LTR16C LTR ERVL 4 491 0 353 275 8 25 chr21 25241034 25241154 -19666416 + L1MC/D LINE L1 4962 5079 -1067 389 312 69 15 chr21 25241448 25241650 -19665920 - MLT1I LTR MaLR -2 407 195 241 345 0 35 chr21 25241778 25241894 -19665676 + L1MC/D LINE L1 5511 5622 -2186 296 296 0 45 chr21 25242879 25242967 -19664603 + L2 LINE L2 3189 3272 0 2212 188 49 11 chr21 25243132 25243580 -19663990 + MLT1C LTR MaLR 3 467 0 1759 162 54 0 chr21 25243618 25243914 -19663656 + AluJb SINE Alu 1 312 0 2417 115 0 52 chr21 25244425 25244809 -19662761 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr21 25246070 25246096 -19661474 + AT_rich Low_complexity Low_complexity 1 26 0 32 75 0 0 chr21 25246121 25246188 -19661382 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr21 25246450 25246482 -19661088 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr21 25246615 25246642 -19660928 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2295 56 0 14 chr21 25246644 25246928 -19660642 - AluY SINE Alu -31 280 1 23 33 0 0 chr21 25246970 25247000 -19660570 + AT_rich Low_complexity Low_complexity 1 30 0 1630 119 48 20 chr21 25247600 25247893 -19659677 + L1PA10 LINE L1 5852 6152 -16 218 299 41 31 chr21 25248688 25248785 -19658785 - L2 LINE L2 -33 3280 3183 2269 281 74 109 chr21 25248853 25249723 -19657847 + L2 LINE L2 60 959 -2355 358 275 0 0 chr21 25249723 25249803 -19657767 - MER94 DNA DNA 0 134 55 2269 281 74 109 chr21 25249803 25249909 -19657661 + L2 LINE L2 959 1067 -2247 2326 160 38 16 chr21 25249909 25250334 -19657236 - Tigger2a DNA MER2_type 0 434 1 2269 281 74 109 chr21 25250334 25250716 -19656854 + L2 LINE L2 1067 1447 -1867 856 309 77 9 chr21 25250783 25251119 -19656451 + L2 LINE L2 2464 2822 -492 2097 130 0 0 chr21 25251480 25251779 -19655791 + AluY SINE Alu 1 299 -12 351 0 0 0 chr21 25252322 25252361 -19655209 + (CA)n Simple_repeat Simple_repeat 2 40 0 213 229 21 0 chr21 25252978 25253026 -19654544 + (CA)n Simple_repeat Simple_repeat 2 50 0 2166 109 0 0 chr21 25254875 25255160 -19652410 + AluSx SINE Alu 1 285 -27 678 117 49 6 chr21 25255160 25255322 -19652248 + (TA)n Simple_repeat Simple_repeat 1 169 0 249 304 62 27 chr21 25255553 25255665 -19651905 + MIR3 SINE MIR 62 177 -31 8808 43 8 5 chr21 25256633 25257698 -19649872 + MER11C LTR ERVK 3 1071 0 321 85 0 0 chr21 25257712 25257759 -19649811 + MADE1 DNA Mariner 34 80 0 1818 246 56 10 chr21 25257813 25258310 -19649260 + MLT2B1 LTR ERVL 1 520 0 22 56 0 0 chr21 25258756 25258792 -19648778 + AT_rich Low_complexity Low_complexity 1 36 0 597 292 51 35 chr21 25258922 25259353 -19648217 + L1ME3A LINE L1 1233 1670 -4726 263 208 21 0 chr21 25259383 25259431 -19648139 + Tigger3(Golem) DNA MER2_type 29 77 -2952 231 189 0 0 chr21 25259454 25259491 -19648079 - Tigger3(Golem) DNA MER2_type -2953 76 40 1103 208 21 17 chr21 25259502 25259524 -19648046 + Tigger3(Golem) DNA MER2_type 2789 2809 -220 1130 203 8 37 chr21 25259524 25259770 -19647800 + MER8 DNA MER2_type 1 239 0 1103 208 21 17 chr21 25259770 25259987 -19647583 + Tigger3(Golem) DNA MER2_type 2809 3029 0 755 208 45 66 chr21 25259991 25260280 -19647290 + L1ME3A LINE L1 2719 3001 -3214 336 264 65 0 chr21 25260361 25260516 -19647054 + L1ME3A LINE L1 3912 4076 -2139 708 306 53 28 chr21 25260623 25260898 -19646672 + L1ME3A LINE L1 4412 4679 -1536 252 86 0 0 chr21 25260898 25260933 -19646637 + (TG)n Simple_repeat Simple_repeat 1 35 0 708 306 53 28 chr21 25260933 25261255 -19646315 + L1ME3A LINE L1 4679 5024 -1191 304 199 6 177 chr21 25261236 25261417 -19646153 + L1 LINE L1 4884 5033 -1113 * 264 281 79 44 chr21 25261457 25261534 -19646036 + L1ME3A LINE L1 5911 5984 -255 4787 155 25 15 chr21 25261534 25261769 -19645801 - MER6 DNA MER2_type 0 865 634 2490 62 0 3 chr21 25261769 25262075 -19645495 + AluY SINE Alu 1 305 -6 4787 155 25 15 chr21 25262075 25262695 -19644875 - MER6 DNA MER2_type -231 634 2 264 281 79 44 chr21 25262695 25262820 -19644750 + L1ME3A LINE L1 5984 6120 -119 299 269 63 54 chr21 25262820 25263043 -19644527 + L1M4 LINE L1 4377 4601 -1545 354 352 71 25 chr21 25263774 25263970 -19643600 - L3 LINE CR1 -90 1487 1283 2301 88 3 23 chr21 25263992 25264300 -19643270 - AluSp SINE Alu -11 302 1 298 317 130 29 chr21 25264441 25264649 -19642921 + L2 LINE L2 2346 2574 -740 1191 293 79 34 chr21 25264699 25265266 -19642304 + MLT1E LTR MaLR 1 593 0 198 349 47 34 chr21 25265335 25265484 -19642086 + L2 LINE L2 2821 2971 -343 2564 153 41 56 chr21 25265519 25266074 -19641496 - L1MA4 LINE L1 -29 6271 5725 198 160 0 0 chr21 25267992 25268042 -19639528 + (CA)n Simple_repeat Simple_repeat 1 50 0 209 238 12 95 chr21 25268552 25268636 -19638934 - MIR3 SINE MIR -5 203 127 216 143 0 0 chr21 25268770 25268812 -19638758 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 325 135 0 chr21 25269188 25269351 -19638219 + MIR3 SINE MIR 19 203 -5 232 202 0 85 chr21 25269600 25269694 -19637876 + L1MC4 LINE L1 6614 6699 -1343 228 279 23 12 chr21 25269758 25269844 -19637726 - L1MC4 LINE L1 -1339 6703 6617 * 239 206 82 14 chr21 25269784 25269857 -19637713 + L1MC4 LINE L1 6621 6698 -1344 292 169 0 22 chr21 25269863 25269952 -19637618 + (TA)n Simple_repeat Simple_repeat 1 87 0 23 0 0 0 chr21 25270022 25270045 -19637525 + AT_rich Low_complexity Low_complexity 1 23 0 1006 146 12 0 chr21 25270142 25270313 -19637257 + MER4B-int LTR ERV1 3780 3952 -2806 1545 175 11 18 chr21 25270633 25270918 -19636652 + MER4B-int LTR ERV1 4391 4673 -2085 2677 213 45 44 chr21 25270960 25271851 -19635719 + MER4B-int LTR ERV1 930 4711 -2047 239 222 185 56 chr21 25271902 25272010 -19635560 - HAL1 LINE L1 -1673 834 713 520 309 106 58 chr21 25272153 25272178 -19635392 - HAL1 LINE L1 -1970 537 515 4113 131 3 2 chr21 25272178 25272812 -19634758 + MER41B LTR ERV1 1 635 0 520 309 106 58 chr21 25272812 25273285 -19634285 - HAL1 LINE L1 -1992 515 15 2033 158 0 0 chr21 25273368 25273678 -19633892 + AluSx SINE Alu 1 310 -2 261 281 62 0 chr21 25273957 25274021 -19633549 - L2 LINE L2 -37 3235 3168 240 35 0 0 chr21 25274874 25274903 -19632667 - MLT2E LTR ERVL -562 66 38 21 0 0 0 chr21 25275174 25275195 -19632375 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr21 25276345 25276387 -19631183 + (TG)n Simple_repeat Simple_repeat 2 43 0 1321 221 70 19 chr21 25277269 25277640 -19629930 - MLT1B LTR MaLR 0 390 1 420 20 0 0 chr21 25277752 25277801 -19629769 + (CA)n Simple_repeat Simple_repeat 2 50 0 213 298 95 12 chr21 25278189 25278273 -19629297 + MIR3 SINE MIR 115 205 -3 * 224 388 20 31 chr21 25278270 25278368 -19629202 - MIR SINE MIR -85 123 27 26 50 0 0 chr21 25279746 25279786 -19627784 + AT_rich Low_complexity Low_complexity 1 40 0 1006 131 6 80 chr21 25279999 25280175 -19627395 - FRAM SINE Alu -17 159 1 203 152 0 0 chr21 25280327 25280360 -19627210 + T-rich Low_complexity Low_complexity 2 34 0 1313 208 9 47 chr21 25280616 25280957 -19626613 + LTR1 LTR ERV1 27 354 -431 8741 188 9 32 chr21 25281000 25282886 -19624684 - L1P3 LINE L1 -3438 3023 1181 1453 121 0 0 chr21 25282895 25283093 -19624477 - L1P3 LINE L1 -5673 202 5 3016 66 23 8 chr21 25283209 25283604 -19623966 + MLT2A1 LTR ERVL 3 403 -41 229 161 32 16 chr21 25283608 25283670 -19623900 - L1MCa LINE L1 -4358 2068 2006 302 151 38 0 chr21 25283687 25283740 -19623830 - L1MC4 LINE L1 -1339 6703 6649 309 221 0 63 chr21 25283756 25283851 -19623719 + L1MC4 LINE L1 6614 6702 -1340 262 0 53 0 chr21 25283899 25283937 -19623633 + (TA)n Simple_repeat Simple_repeat 2 41 0 847 227 12 25 chr21 25283937 25284179 -19623391 + L1P3 LINE L1 1230 1468 -4993 322 49 0 0 chr21 25284188 25284229 -19623341 - MLT2A2 LTR ERVL 0 453 413 41439 83 13 6 chr21 25284258 25289876 -19617694 + HERVL-A1 LTR ERVL 1 5654 0 2606 132 20 2 chr21 25289876 25290269 -19617301 + MLT2A1 LTR ERVL 1 400 -44 311 210 0 12 chr21 25290271 25290352 -19617218 + (TA)n Simple_repeat Simple_repeat 2 81 0 379 105 0 0 chr21 25290353 25290410 -19617160 + MLT2A1 LTR ERVL 397 453 0 532 286 165 4 chr21 25290787 25291042 -19616528 - HAL1 LINE L1 -618 1889 1594 497 291 134 20 chr21 25291059 25291351 -19616219 - MLT1I LTR MaLR -2 407 83 285 309 87 27 chr21 25291361 25291510 -19616060 - MLT1I LTR MaLR -218 191 34 716 264 110 13 chr21 25291564 25291863 -19615707 - HAL1 LINE L1 -950 1557 1230 2200 63 3 14 chr21 25292720 25293035 -19614535 + AluY SINE Alu 1 312 0 311 331 68 12 chr21 25293804 25293967 -19613603 + MIR3 SINE MIR 18 189 -19 12419 216 28 14 chr21 25294179 25299455 -19608115 + L1PA16 LINE L1 1390 6865 -4 1593 226 42 21 chr21 25300044 25300425 -19607145 + MLT1D LTR MaLR 113 501 -4 188 200 0 80 chr21 25300568 25300618 -19606952 + MIR SINE MIR 144 189 -73 554 188 13 0 chr21 25300675 25300916 -19606654 + (TA)n Simple_repeat Simple_repeat 1 244 0 977 314 92 14 chr21 25300918 25301354 -19606216 - LTR33A LTR ERVL 0 523 54 3318 18 0 0 chr21 25301355 25301741 -19605829 + L1PA2 LINE L1 5770 6155 0 225 119 0 0 chr21 25301765 25301807 -19605763 + (A)n Simple_repeat Simple_repeat 1 42 0 989 145 45 0 chr21 25301833 25302012 -19605558 + L1MB3 LINE L1 5994 6180 -3 248 283 75 25 chr21 25302073 25302193 -19605377 + MIR SINE MIR 137 262 0 193 307 91 93 chr21 25302789 25302949 -19604621 + L2 LINE L2 2215 2374 -940 538 103 0 0 chr21 25302949 25303027 -19604543 + L1PA8 LINE L1 6088 6165 -7 193 307 91 93 chr21 25303027 25303328 -19604242 + L2 LINE L2 2374 2675 -639 1084 179 114 7 chr21 25303737 25304010 -19603560 + MER33 DNA MER1_type 1 302 -22 2336 93 0 0 chr21 25304245 25304545 -19603025 - AluSq SINE Alu -9 304 5 265 272 19 0 chr21 25304720 25304823 -19602747 + HAL1 LINE L1 78 182 -2325 713 161 0 0 chr21 25304944 25305062 -19602508 + AluSg/x SINE Alu 190 307 -2 1244 266 126 28 chr21 25305062 25305316 -19602254 + HAL1 LINE L1 1061 1289 -1218 1674 199 0 7 chr21 25305316 25305618 -19601952 + AluJo SINE Alu 1 300 -12 1244 266 126 28 chr21 25305618 25306086 -19601484 + HAL1 LINE L1 1289 1854 -653 1512 173 16 50 chr21 25306090 25306408 -19601162 - MLT2B1 LTR ERVL -213 307 1 214 302 124 35 chr21 25306960 25307129 -19600441 - MIR SINE MIR 0 262 79 389 320 90 48 chr21 25307158 25307570 -19600000 - MARNA DNA Mariner -72 514 86 237 65 0 0 chr21 25307582 25307613 -19599957 + (TC)n Simple_repeat Simple_repeat 2 32 0 2970 89 33 5 chr21 25308174 25308603 -19598967 + MLT2A1 LTR ERVL 4 444 0 622 221 27 34 chr21 25310417 25310618 -19596952 + MLT2D LTR ERVL 227 395 -19 231 170 0 0 chr21 25310624 25310671 -19596899 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 191 21 0 chr21 25310671 25310718 -19596852 + MLT2D LTR ERVL 367 414 0 192 277 123 0 chr21 25311060 25311125 -19596445 - L2 LINE L2 -10 3262 3190 697 289 22 27 chr21 25311172 25311397 -19596173 - MIR SINE MIR -6 256 33 584 335 72 62 chr21 25311481 25311576 -19595994 - L2 LINE L2 -476 2838 2745 2310 95 0 7 chr21 25311576 25311881 -19595689 - AluY SINE Alu -8 303 1 584 335 72 62 chr21 25311881 25312562 -19595008 - L2 LINE L2 -569 2745 2054 298 268 99 0 chr21 25312622 25312693 -19594877 - MER2 DNA MER2_type 0 345 268 486 75 21 11 chr21 25312735 25312829 -19594741 + (TA)n Simple_repeat Simple_repeat 1 95 0 2241 116 0 16 chr21 25312829 25313139 -19594431 - AluSx SINE Alu -7 305 1 1048 175 0 0 chr21 25313182 25313353 -19594217 - MER2 DNA MER2_type -172 173 3 34 0 0 0 chr21 25314306 25314340 -19593230 + AT_rich Low_complexity Low_complexity 1 34 0 589 215 25 0 chr21 25314341 25314462 -19593108 - FRAM SINE Alu -12 164 41 197 315 68 103 chr21 25314939 25315085 -19592485 + MIR SINE MIR 7 147 -115 540 289 72 0 chr21 25315661 25315827 -19591743 + MER45A DNA AcHobo 1 178 0 644 171 45 131 chr21 25315886 25315981 -19591589 + MER20 DNA MER1_type 37 139 -80 2099 145 0 0 chr21 25315981 25316277 -19591293 + AluSx SINE Alu 3 298 -14 644 171 45 131 chr21 25316277 25316330 -19591240 + MER20 DNA MER1_type 139 166 -53 2495 63 7 0 chr21 25316330 25316632 -19590938 - AluY SINE Alu -7 304 1 644 171 45 131 chr21 25316632 25316681 -19590889 + MER20 DNA MER1_type 166 218 -1 552 57 0 102 chr21 25318033 25318082 -19589488 + MADE1 DNA Mariner 2 40 -40 210 37 0 0 chr21 25318082 25318109 -19589461 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 552 57 0 102 chr21 25318109 25318147 -19589423 + MADE1 DNA Mariner 40 80 0 2216 103 0 0 chr21 25318345 25318636 -19588934 + AluSg SINE Alu 1 291 -19 1800 159 25 69 chr21 25318748 25319156 -19588414 + MLT1B LTR MaLR 1 390 0 299 280 99 89 chr21 25319373 25319745 -19587825 + MLT1J1 LTR MaLR 63 438 -8 2144 117 7 0 chr21 25319862 25320162 -19587408 - AluSq SINE Alu -11 302 1 804 130 9 139 chr21 25320685 25320901 -19586669 + MER53 DNA DNA 1 188 -1 534 206 63 22 chr21 25321600 25321788 -19585782 - MER58 DNA MER1_type -1 2419 12 417 303 105 50 chr21 25321846 25322029 -19585541 + MLT1J1 LTR MaLR 71 242 -204 2440 51 0 7 chr21 25322029 25322324 -19585246 + AluY SINE Alu 3 295 -16 417 303 105 50 chr21 25322324 25322483 -19585087 + MLT1J1 LTR MaLR 242 432 -14 46 54 0 0 chr21 25323082 25323156 -19584414 + AT_rich Low_complexity Low_complexity 1 74 0 371 346 0 16 chr21 25323854 25324042 -19583528 - HAL1 LINE L1 -2287 220 36 21 0 0 0 chr21 25324408 25324429 -19583141 + AT_rich Low_complexity Low_complexity 1 21 0 430 281 70 0 chr21 25324457 25324585 -19582985 - MER58B DNA MER1_type -2 339 203 379 288 153 0 chr21 25324991 25325109 -19582461 - MER5A DNA MER1_type -9 180 45 2042 129 6 28 chr21 25325294 25325612 -19581958 + AluSx SINE Alu 1 311 -1 199 400 18 0 chr21 25326269 25326379 -19581191 - L3 LINE CR1 -1346 231 120 604 241 19 93 chr21 25326760 25326976 -19580594 - MIR SINE MIR -49 213 14 185 306 122 0 chr21 25327768 25327866 -19579704 - MIR SINE MIR -37 225 116 1517 158 62 11 chr21 25327973 25328797 -19578773 - L1MA9 LINE L1 -30 6282 5365 304 262 53 29 chr21 25329322 25329547 -19578023 - L1MEc LINE L1 -4784 1823 1400 693 272 54 40 chr21 25329610 25330033 -19577537 - L1MEc LINE L1 -4878 1446 1030 2169 199 78 25 chr21 25330033 25330562 -19577008 - MER74A LTR ERVL 0 558 2 1936 148 10 0 chr21 25330568 25330865 -19576705 - AluSq SINE Alu -13 300 1 693 272 54 40 chr21 25330865 25331160 -19576410 - L1MEc LINE L1 -5298 1026 815 328 272 44 61 chr21 25331491 25331605 -19575965 - L2 LINE L2 -25 3247 3136 1950 171 25 57 chr21 25332095 25332498 -19575072 - MLT1B LTR MaLR 0 390 1 2290 99 3 3 chr21 25333737 25334050 -19573520 + AluSp SINE Alu 1 313 0 610 310 62 34 chr21 25334140 25334498 -19573072 - L2 LINE L2 0 3313 2946 249 33 0 0 chr21 25334558 25334588 -19572982 + (TA)n Simple_repeat Simple_repeat 1 30 0 245 282 12 12 chr21 25336699 25336784 -19570786 + MLT1I LTR MaLR 317 401 -8 1447 270 56 18 chr21 25336907 25337303 -19570267 - LTR40a LTR ERVL -107 412 2 1113 103 7 0 chr21 25337997 25338143 -19569427 - AluSq/x SINE Alu -166 147 1 1015 213 6 0 chr21 25338148 25338331 -19569239 + Tigger5 DNA MER2_type 38 221 -2102 2976 131 16 14 chr21 25338335 25338823 -19568747 + Tigger5 DNA MER2_type 1835 2323 0 367 249 87 69 chr21 25338834 25339007 -19568563 - MIR SINE MIR -33 229 54 1073 181 36 29 chr21 25340285 25340561 -19567009 + L1MA8 LINE L1 6012 6289 -2 435 287 71 82 chr21 25340950 25341232 -19566338 - L2 LINE L2 0 3313 3035 414 284 209 0 chr21 25342218 25342352 -19565218 + MER45 DNA AcHobo 1 162 -878 26 50 0 0 chr21 25342568 25342608 -19564962 + AT_rich Low_complexity Low_complexity 1 40 0 808 249 44 0 chr21 25342904 25343085 -19564485 - MER5A DNA MER1_type 0 189 1 32 43 0 0 chr21 25344689 25344735 -19562835 + AT_rich Low_complexity Low_complexity 1 46 0 231 291 146 19 chr21 25344879 25344982 -19562588 + MIR SINE MIR 30 145 -63 223 246 49 0 chr21 25345035 25345096 -19562474 + MER91 DNA MER1_type 1 64 -76 182 293 0 0 chr21 25345843 25345884 -19561686 - MIR3 SINE MIR -11 197 157 282 204 0 0 chr21 25346483 25346537 -19561033 - MIR SINE MIR -123 139 86 184 276 92 26 chr21 25346770 25346846 -19560724 + L2 LINE L2 3186 3266 -47 2235 67 17 10 chr21 25347514 25347813 -19559757 - AluY SINE Alu -10 301 1 440 59 0 59 chr21 25349424 25349492 -19558078 + MADE1 DNA Mariner 17 80 0 225 132 0 0 chr21 25350959 25350997 -19556573 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1653 257 52 59 chr21 25351576 25352487 -19555083 - L1MC5 LINE L1 -370 7591 6688 192 349 16 0 chr21 25353461 25353524 -19554046 + L2 LINE L2 3209 3272 0 1236 215 66 64 chr21 25353690 25354146 -19553424 + LTR16A1 LTR ERVL 1 457 0 353 322 16 49 chr21 25354146 25354329 -19553241 + HERV16 LTR ERVL 1 177 -4819 2252 128 31 6 chr21 25354329 25354681 -19552889 - THE1B LTR MaLR 0 364 4 9577 112 54 41 chr21 25354684 25356244 -19551326 - THE1B-int LTR MaLR 0 1580 1 2215 146 22 0 chr21 25356244 25356600 -19550970 - THE1B LTR MaLR 0 364 1 949 215 51 17 chr21 25357114 25357351 -19550219 - MLT1A1 LTR MaLR 0 365 121 1748 59 5 23 chr21 25358652 25358873 -19548697 - AluY SINE Alu -9 302 86 1011 223 42 5 chr21 25359578 25359793 -19547777 + MER58A DNA MER1_type 1 223 -1 207 100 0 0 chr21 25359896 25359926 -19547644 + (TC)n Simple_repeat Simple_repeat 1 30 0 58 82 0 0 chr21 25360269 25360404 -19547166 + AT_rich Low_complexity Low_complexity 1 135 0 26 82 0 0 chr21 25362753 25362814 -19544756 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr21 25362908 25362939 -19544631 + AT_rich Low_complexity Low_complexity 1 31 0 462 287 179 36 chr21 25363975 25364198 -19543372 + MIR SINE MIR 2 256 -6 279 0 0 0 chr21 25365423 25365454 -19542116 + (GA)n Simple_repeat Simple_repeat 1 31 0 446 326 60 18 chr21 25365558 25365776 -19541794 + MIR SINE MIR 15 241 -21 196 420 23 0 chr21 25366479 25366567 -19541003 + MIR SINE MIR 37 126 -82 384 300 112 42 chr21 25367156 25367559 -19540011 + L1MB1 LINE L1 5469 5899 -290 * 1984 243 101 10 chr21 25367198 25367804 -19539766 + L1ME3A LINE L1 5508 6168 -2 2291 95 0 13 chr21 25367807 25368113 -19539457 + AluY SINE Alu 3 304 -7 22 35 0 0 chr21 25369032 25369061 -19538509 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr21 25369079 25369118 -19538452 + AT_rich Low_complexity Low_complexity 1 39 0 1000 47 78 0 chr21 25369285 25369414 -19538156 - MER85 DNA T2_type 0 139 1 310 308 55 27 chr21 25369953 25370099 -19537471 + L1ME4a LINE L1 5969 6118 -3 282 297 55 60 chr21 25370116 25370298 -19537272 + L2 LINE L2 3004 3184 -129 28 61 0 0 chr21 25370306 25370355 -19537215 + AT_rich Low_complexity Low_complexity 1 49 0 392 273 9 45 chr21 25370381 25370491 -19537079 + L2 LINE L2 3208 3313 0 227 256 22 22 chr21 25371124 25371214 -19536356 + A-rich Low_complexity Low_complexity 1 90 0 1577 131 30 0 chr21 25371798 25372066 -19535504 - L1MA5A LINE L1 -1 6296 6021 328 273 65 52 chr21 25372377 25372531 -19535039 - MLT1H LTR MaLR -274 200 21 2279 81 0 0 chr21 25372535 25372820 -19534750 - AluY SINE Alu -16 295 11 357 40 0 0 chr21 25372861 25372911 -19534659 + AluY SINE Alu 259 308 0 515 319 37 62 chr21 25372914 25373380 -19534190 - L2 LINE L2 -133 3180 2742 353 294 16 24 chr21 25373382 25373508 -19534062 - L2 LINE L2 -1051 2263 2139 31 44 0 0 chr21 25374391 25374436 -19533134 + AT_rich Low_complexity Low_complexity 1 45 0 349 312 93 34 chr21 25375327 25375564 -19532006 - MIR SINE MIR 0 262 12 229 348 80 9 chr21 25375681 25375793 -19531777 - L2 LINE L2 -2 3311 3192 292 345 65 7 chr21 25375818 25375957 -19531613 - MIR SINE MIR -37 225 79 180 0 0 0 chr21 25376204 25376224 -19531346 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr21 25376814 25376835 -19530735 + AT_rich Low_complexity Low_complexity 1 21 0 1980 92 0 15 chr21 25378131 25378404 -19529166 - AluY SINE Alu -8 303 35 1342 190 11 18 chr21 25378980 25379139 -19528431 - MER33 DNA MER1_type -2283 302 146 2313 146 11 11 chr21 25379139 25379333 -19528237 + THE1B LTR MaLR 1 197 -167 333 0 0 0 chr21 25379333 25379370 -19528200 + (TC)n Simple_repeat Simple_repeat 2 38 0 2313 146 11 11 chr21 25379370 25379539 -19528031 + THE1B LTR MaLR 196 364 0 1342 190 11 18 chr21 25379539 25379694 -19527876 - MER33 DNA MER1_type -2439 146 1 2478 127 6 3 chr21 25379822 25380185 -19527385 + THE1B LTR MaLR 1 364 0 1206 236 115 43 chr21 25381350 25381812 -19525758 - MLT1D LTR MaLR -7 498 4 204 40 0 0 chr21 25382953 25382978 -19524592 + (CA)n Simple_repeat Simple_repeat 2 26 0 492 277 15 0 chr21 25384118 25384248 -19523322 - LTR16C LTR ERVL 0 491 360 572 275 77 5 chr21 25384519 25384726 -19522844 + MLT2C1 LTR ERVL 1 222 -175 593 69 30 10 chr21 25384934 25385035 -19522535 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 676 242 16 54 chr21 25385111 25385418 -19522152 + MLT1-int LTR MaLR 2 413 -958 1000 247 168 52 chr21 25385432 25385525 -19522045 + MLT1E2 LTR MaLR 230 311 -313 1979 200 13 13 chr21 25385525 25385565 -19522005 - MLT1B LTR MaLR 0 390 351 2184 124 0 22 chr21 25385565 25385880 -19521690 + AluSq SINE Alu 1 308 -5 1979 200 13 13 chr21 25385880 25386229 -19521341 - MLT1B LTR MaLR -38 352 1 1000 247 168 52 chr21 25386229 25386501 -19521069 + MLT1E2 LTR MaLR 311 624 0 843 324 40 29 chr21 25386875 25387329 -19520241 - ERVL LTR ERVL -2307 3457 2999 327 367 42 17 chr21 25387904 25388144 -19519426 + HERV16 LTR ERVL 740 985 -4011 8228 115 44 7 chr21 25388149 25389388 -19518182 - HSMAR1 DNA Mariner -1 1286 1 1598 169 59 48 chr21 25389391 25389747 -19517823 - MLT1A1 LTR MaLR -3 362 3 192 77 0 0 chr21 25390252 25390278 -19517292 + (A)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr21 25390947 25390971 -19516599 + AT_rich Low_complexity Low_complexity 1 24 0 189 107 0 0 chr21 25391217 25391245 -19516325 + (A)n Simple_repeat Simple_repeat 1 28 0 21 89 0 0 chr21 25391948 25392004 -19515566 + AT_rich Low_complexity Low_complexity 1 56 0 796 250 27 73 chr21 25392111 25392434 -19515136 + MLT1A1 LTR MaLR 2 242 -123 1929 122 0 71 chr21 25392434 25392770 -19514800 - AluSx SINE Alu 0 312 1 796 250 27 73 chr21 25392770 25392889 -19514681 + MLT1A1 LTR MaLR 242 365 0 994 106 15 10 chr21 25393787 25393986 -19513584 - L1P4 LINE L1 -563 5603 5435 1813 117 4 0 chr21 25393989 25394238 -19513332 - AluSg SINE Alu -15 295 46 2880 165 25 9 chr21 25394248 25394774 -19512796 + L1PA16 LINE L1 5617 6150 -16 1935 120 42 0 chr21 25394802 25395086 -19512484 - AluSx SINE Alu -10 302 7 811 142 65 0 chr21 25396560 25396715 -19510855 + L1PA13 LINE L1 5999 6163 0 261 309 8 0 chr21 25396783 25396909 -19510661 - L1M4 LINE L1 -1078 5068 4942 314 250 53 0 chr21 25397285 25397361 -19510209 - L2 LINE L2 -9 3263 3184 29 28 0 0 chr21 25397719 25397755 -19509815 + AT_rich Low_complexity Low_complexity 1 36 0 2046 78 0 44 chr21 25398275 25398600 -19508970 + AluY SINE Alu 1 312 0 304 160 66 19 chr21 25398666 25398772 -19508798 + (TA)n Simple_repeat Simple_repeat 2 112 0 459 291 42 96 chr21 25399037 25399137 -19508433 + MIR SINE MIR 2 106 -156 370 0 0 0 chr21 25399137 25399184 -19508386 + L1PA4 LINE L1 6109 6155 0 459 291 42 96 chr21 25399184 25399344 -19508226 + MIR SINE MIR 106 248 -14 24 32 0 0 chr21 25399773 25399804 -19507766 + AT_rich Low_complexity Low_complexity 1 31 0 578 327 53 23 chr21 25399863 25400129 -19507441 + L2 LINE L2 2644 2917 -397 2520 106 25 3 chr21 25400160 25400527 -19507043 + THE1C LTR MaLR 1 375 0 2056 128 0 3 chr21 25400666 25400964 -19506606 + AluSg SINE Alu 1 297 -13 318 26 0 0 chr21 25401389 25401428 -19506142 + (TG)n Simple_repeat Simple_repeat 1 39 0 2713 23 0 0 chr21 25402020 25402323 -19505247 + AluY SINE Alu 1 303 -8 189 0 0 0 chr21 25403306 25403327 -19504243 + (CAGGG)n Simple_repeat Simple_repeat 2 22 0 1351 171 0 0 chr21 25404019 25404236 -19503334 - AluJb SINE Alu -9 303 87 406 288 54 27 chr21 25404838 25405022 -19502548 - MIR SINE MIR -72 190 2 1625 107 96 48 chr21 25405728 25406044 -19501526 - AluY SINE Alu 0 329 1 28 61 0 0 chr21 25406418 25406467 -19501103 + AT_rich Low_complexity Low_complexity 1 49 0 264 264 40 8 chr21 25406778 25406903 -19500667 - L1ME LINE L1 -394 5727 5599 7716 23 0 0 chr21 25406978 25408140 -19499430 - L1PA4 LINE L1 0 6155 4994 187 333 69 0 chr21 25408880 25408952 -19498618 + MIR SINE MIR 71 147 -115 3448 217 81 30 chr21 25409071 25410083 -19497487 - Charlie1 DNA MER1_type -38 2723 1660 227 200 240 0 chr21 25410362 25410437 -19497133 + MIR SINE MIR 158 250 -12 198 71 0 0 chr21 25410849 25410877 -19496693 + (T)n Simple_repeat Simple_repeat 1 28 0 249 271 0 0 chr21 25411108 25411167 -19496403 + (CAA)n Simple_repeat Simple_repeat 2 60 0 225 0 0 0 chr21 25411897 25411922 -19495648 + (T)n Simple_repeat Simple_repeat 1 25 0 519 343 91 33 chr21 25412760 25413189 -19494381 + L2 LINE L2 2280 2733 -581 296 196 0 0 chr21 25413206 25413262 -19494308 - MLT2B1 LTR ERVL 0 453 398 223 186 72 0 chr21 25413299 25413396 -19494174 + (TA)n Simple_repeat Simple_repeat 2 105 0 70 41 0 0 chr21 25413396 25413494 -19494076 + AT_rich Low_complexity Low_complexity 1 98 0 349 214 0 61 chr21 25413611 25413709 -19493861 - L1MC4 LINE L1 -1346 6696 6605 260 91 23 0 chr21 25413718 25413762 -19493808 + (TA)n Simple_repeat Simple_repeat 1 45 0 1837 197 17 5 chr21 25413770 25414117 -19493453 - MLT2B1 LTR ERVL -111 443 1 1166 171 9 42 chr21 25414238 25414454 -19493116 - AluJb SINE Alu -26 286 78 213 234 117 13 chr21 25414474 25414551 -19493019 + MIR SINE MIR 178 262 0 199 343 57 0 chr21 25414556 25414626 -19492944 + L2 LINE L2 3183 3256 -16 1838 117 65 0 chr21 25414824 25415114 -19492456 + AluSx SINE Alu 3 311 -1 257 285 168 28 chr21 25415755 25415934 -19491636 + MIR SINE MIR 59 262 0 1817 151 123 6 chr21 25416067 25416384 -19491186 - MLT1A1 LTR MaLR 0 365 12 21 0 0 0 chr21 25416862 25416883 -19490687 + AT_rich Low_complexity Low_complexity 1 21 0 2299 102 0 0 chr21 25417578 25417882 -19489688 + AluSc SINE Alu 1 304 -5 535 314 45 9 chr21 25417894 25418114 -19489456 - MIR SINE MIR -1 261 34 488 56 14 0 chr21 25418162 25418234 -19489336 + (TG)n Simple_repeat Simple_repeat 2 74 0 631 264 47 28 chr21 25418759 25418971 -19488599 - MIR SINE MIR -44 218 3 1313 263 191 48 chr21 25419102 25419441 -19488129 + L1M4 LINE L1 3280 3569 -2577 2269 95 0 0 chr21 25419441 25419736 -19487834 - AluSc SINE Alu -14 295 1 1313 263 191 48 chr21 25419736 25420784 -19486786 + L1M4 LINE L1 3569 4865 -1281 2520 42 0 13 chr21 25420784 25421092 -19486478 - AluY SINE Alu -7 304 1 331 259 35 0 chr21 25421125 25421210 -19486360 + MER58 DNA MER1_type 128 2420 0 1067 262 45 62 chr21 25421285 25421621 -19485949 - MER69 DNA AcHobo -877 349 20 345 333 0 0 chr21 25422262 25422358 -19485212 + MIR SINE MIR 40 135 -73 21 36 0 0 chr21 25423904 25423932 -19483638 + AT_rich Low_complexity Low_complexity 1 28 0 567 213 67 143 chr21 25424429 25424720 -19482850 + L1M4 LINE L1 2686 2945 -3201 1233 240 62 39 chr21 25424720 25425107 -19482463 - MSTD LTR MaLR 0 396 1 567 213 67 143 chr21 25425107 25425186 -19482384 + L1M4 LINE L1 2945 3028 -3118 5902 114 9 9 chr21 25425195 25425385 -19482185 + L1PA13 LINE L1 4609 4798 -1365 2198 131 0 0 chr21 25425385 25425697 -19481873 + AluSx SINE Alu 1 312 0 5902 114 9 9 chr21 25425697 25427089 -19480481 + L1PA13 LINE L1 4797 6159 -4 1817 231 88 25 chr21 25427092 25427750 -19479820 + L1M4 LINE L1 4228 4932 -1214 1860 207 8 10 chr21 25427750 25428141 -19479429 - MLT1B LTR MaLR 0 390 1 1817 231 88 25 chr21 25428141 25428161 -19479409 + L1M4 LINE L1 4932 4949 -1197 * 1987 234 22 10 chr21 25428150 25428659 -19478911 + L1MB7 LINE L1 5660 6174 -10 919 266 16 6 chr21 25428667 25428983 -19478587 + L1M4 LINE L1 4984 5302 -844 2144 126 0 3 chr21 25429007 25429317 -19478253 - AluSx SINE Alu -3 309 1 201 197 42 0 chr21 25429711 25429782 -19477788 + CT-rich Low_complexity Low_complexity 3 76 0 30 0 0 0 chr21 25429899 25429929 -19477641 + AT_rich Low_complexity Low_complexity 1 30 0 1489 107 19 0 chr21 25429939 25430144 -19477426 - AluSx SINE Alu -94 218 10 246 271 0 29 chr21 25430258 25430328 -19477242 - MLT1B LTR MaLR -322 68 1 1828 177 77 24 chr21 25430782 25430950 -19476620 + MSTA LTR MaLR 1 159 -269 4459 52 2 5 chr21 25430950 25431511 -19476059 + L1PA8 LINE L1 5614 6172 0 1828 177 77 24 chr21 25431511 25431721 -19475849 + MSTA LTR MaLR 159 399 -29 296 366 53 45 chr21 25432242 25432747 -19474823 - L2 LINE L2 -351 2963 2455 24 0 0 0 chr21 25432756 25432780 -19474790 + AT_rich Low_complexity Low_complexity 1 24 0 317 292 135 11 chr21 25433098 25433187 -19474383 + L2 LINE L2 3148 3247 -25 264 59 0 0 chr21 25433196 25433230 -19474340 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 23 0 0 0 chr21 25434903 25434926 -19472644 + AT_rich Low_complexity Low_complexity 1 23 0 485 281 8 0 chr21 25435274 25435395 -19472175 - MLT1L LTR MaLR -339 276 155 428 255 65 69 chr21 25435625 25435841 -19471729 + MER58C DNA MER1_type 1 215 0 185 306 0 16 chr21 25436285 25436347 -19471223 + MIR SINE MIR 94 154 -108 309 287 39 87 chr21 25437786 25438040 -19469530 - LTR16A1 LTR ERVL -163 294 53 3576 43 2 2 chr21 25438526 25438969 -19468601 - L1PA7 LINE L1 -2 6152 5710 187 214 95 0 chr21 25439181 25439223 -19468347 + MIR SINE MIR 169 214 -48 1979 122 21 0 chr21 25440344 25440630 -19466940 + AluSx SINE Alu 5 296 -16 454 121 46 17 chr21 25440698 25440872 -19466698 + (TA)n Simple_repeat Simple_repeat 2 180 0 1419 180 16 33 chr21 25441406 25441712 -19465858 + L1MC3 LINE L1 7479 7779 -6 24 0 0 0 chr21 25441769 25441793 -19465777 + AT_rich Low_complexity Low_complexity 1 24 0 364 345 64 20 chr21 25442068 25442271 -19465299 + MIR SINE MIR 51 262 0 345 364 19 0 chr21 25442569 25442731 -19464839 - MIR SINE MIR -48 214 50 1644 139 66 46 chr21 25442758 25443124 -19464446 + THE1C LTR MaLR 3 375 0 629 362 109 41 chr21 25448894 25450133 -19457437 + L2 LINE L2 1353 2675 -639 434 275 104 28 chr21 25450190 25450372 -19457198 - MER102b DNA MER1_type -1 340 145 219 294 283 0 chr21 25450432 25450524 -19457046 + L2 LINE L2 3143 3260 -12 830 222 0 0 chr21 25450633 25450795 -19456775 - FRAM SINE Alu -4 162 1 183 465 20 5 chr21 25450801 25451003 -19456567 - L2 LINE L2 -252 3020 2816 228 400 41 10 chr21 25451066 25451261 -19456309 - L2 LINE L2 -601 2713 2513 594 179 9 9 chr21 25451433 25451539 -19456031 + MER5A DNA MER1_type 4 109 -80 191 379 0 0 chr21 25451606 25451664 -19455906 + L2 LINE L2 3007 3064 -208 2060 135 10 10 chr21 25453232 25453544 -19454026 + AluSx SINE Alu 1 312 0 336 102 0 0 chr21 25453662 25453711 -19453859 + (T)n Simple_repeat Simple_repeat 1 49 0 1740 129 0 0 chr21 25453711 25453959 -19453611 - AluSq SINE Alu -65 248 1 334 277 99 60 chr21 25454078 25454381 -19453189 - L1MEc LINE L1 -4937 1322 1011 263 293 110 0 chr21 25457140 25457222 -19450348 - MIR SINE MIR -51 211 121 559 145 4 204 chr21 25457976 25458211 -19449359 - MER53 DNA DNA -1 188 1 195 0 56 28 chr21 25458330 25458366 -19449204 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 743 153 88 6 chr21 25460261 25460431 -19447139 - MER53 DNA DNA -3 186 3 301 248 133 76 chr21 25460624 25460729 -19446841 - MIR SINE MIR -121 141 31 308 265 49 22 chr21 25461471 25461612 -19445958 - MIR SINE MIR -53 155 16 191 35 0 35 chr21 25461824 25461853 -19445717 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 190 333 144 0 chr21 25462138 25462228 -19445342 + MIR SINE MIR 157 259 -3 306 47 0 0 chr21 25463362 25463405 -19444165 + MADE1 DNA Mariner 1 43 -37 291 28 0 0 chr21 25464580 25464616 -19442954 + (TG)n Simple_repeat Simple_repeat 1 36 0 486 326 31 36 chr21 25465699 25465892 -19441678 + MIR SINE MIR 2 193 -69 1212 206 15 101 chr21 25466259 25466666 -19440904 - MLT1A2 LTR MaLR -2 372 1 300 330 9 19 chr21 25468099 25468205 -19439365 - MER5A DNA MER1_type -45 144 40 2615 290 46 47 chr21 25468251 25469245 -19438325 + L2 LINE L2 1713 2705 -609 611 156 126 7 chr21 25469263 25469398 -19438172 + MLT1A1 LTR MaLR 2 152 -213 937 279 99 25 chr21 25469513 25470063 -19437507 + L2 LINE L2 2705 3313 0 190 267 17 33 chr21 25470168 25470228 -19437342 + L2 LINE L2 3255 3313 0 28 29 0 0 chr21 25470542 25470577 -19436993 + AT_rich Low_complexity Low_complexity 1 35 0 276 309 21 41 chr21 25471759 25471856 -19435714 + MIR SINE MIR 6 100 -162 35 54 0 0 chr21 25472581 25472637 -19434933 + AT_rich Low_complexity Low_complexity 1 56 0 2335 128 28 19 chr21 25472690 25473049 -19434521 - THE1B LTR MaLR -2 362 1 2357 210 14 51 chr21 25473783 25474350 -19433220 + MLT2B3 LTR ERVL 3 548 -6 36 53 0 0 chr21 25475979 25476036 -19431534 + AT_rich Low_complexity Low_complexity 1 57 0 247 340 10 21 chr21 25476510 25476607 -19430963 + MIR SINE MIR 63 158 -104 811 149 75 6 chr21 25476612 25476773 -19430797 - L1MB1 LINE L1 0 6168 5997 822 206 24 6 chr21 25477115 25477280 -19430290 - FAM SINE Alu -7 168 1 183 129 0 0 chr21 25477587 25477618 -19429952 + (CA)n Simple_repeat Simple_repeat 2 32 0 542 294 149 23 chr21 25477708 25477929 -19429641 + MIR SINE MIR 7 255 -7 3501 212 8 19 chr21 25478024 25478761 -19428809 + MER44D DNA MER2_type 5 605 0 234 264 0 0 chr21 25478812 25478865 -19428705 - MIR SINE MIR -58 150 98 401 169 0 28 chr21 25479339 25479410 -19428160 + Tigger2 DNA MER2_type 1 69 -2649 * 1366 120 40 32 chr21 25479400 25479650 -19427920 + Tigger2 DNA MER2_type 2273 2524 -194 284 350 50 8 chr21 25480172 25480292 -19427278 + L2 LINE L2 3138 3262 -10 2364 72 0 3 chr21 25480840 25481146 -19426424 + AluY SINE Alu 1 305 -6 1857 151 0 26 chr21 25481478 25481789 -19425781 + AluSx SINE Alu 1 303 -9 23 54 0 0 chr21 25482167 25482204 -19425366 + AT_rich Low_complexity Low_complexity 1 37 0 231 114 0 0 chr21 25482517 25482552 -19425018 + (A)n Simple_repeat Simple_repeat 1 35 0 529 271 75 37 chr21 25485274 25485569 -19422001 - L1ME3A LINE L1 -219 5951 5646 540 284 66 43 chr21 25486216 25486565 -19421005 - L1ME3A LINE L1 -550 5620 5264 257 263 59 46 chr21 25486871 25487023 -19420547 + L1M4 LINE L1 4793 4946 -1200 21 57 0 0 chr21 25487137 25487172 -19420398 + AT_rich Low_complexity Low_complexity 1 35 0 293 315 48 6 chr21 25487188 25487353 -19420217 - L1ME3A LINE L1 -1803 4343 4172 353 268 89 0 chr21 25487566 25487678 -19419892 - MIR SINE MIR -139 123 2 651 268 79 59 chr21 25488473 25488827 -19418743 + MLT1H LTR MaLR 30 390 -159 238 345 48 7 chr21 25489781 25489926 -19417644 - L3b LINE CR1 -117 1466 1316 264 339 34 17 chr21 25491100 25491277 -19416293 - MIR SINE MIR -81 181 2 213 241 133 36 chr21 25491562 25491645 -19415925 + MIR SINE MIR 57 147 -61 809 260 107 53 chr21 25491767 25492179 -19415391 + MLT1C LTR MaLR 2 435 -32 387 0 0 0 chr21 25492194 25492237 -19415333 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 283 316 102 53 chr21 25493515 25493759 -19413811 - L2 LINE L2 -18 3295 3040 357 297 22 0 chr21 25494491 25494582 -19412988 + MLT1F1 LTR MaLR 69 161 -406 202 289 0 0 chr21 25494776 25494821 -19412749 + (CA)n Simple_repeat Simple_repeat 1 45 0 279 382 74 33 chr21 25495917 25496075 -19411495 - L2 LINE L2 -660 2654 2504 1701 152 19 48 chr21 25496075 25496391 -19411179 - AluJb SINE Alu -5 307 1 279 382 74 33 chr21 25496391 25496651 -19410919 - L2 LINE L2 -810 2504 2219 217 381 93 22 chr21 25497563 25498014 -19409556 - L2 LINE L2 -2126 1188 706 234 105 0 0 chr21 25498092 25498130 -19409440 + (GA)n Simple_repeat Simple_repeat 2 39 0 238 365 10 10 chr21 25498335 25498439 -19409131 + L3 LINE CR1 1068 1171 -406 3013 165 12 8 chr21 25498441 25498951 -19408619 - MER41E LTR ERV1 0 512 1 372 310 69 17 chr21 25499042 25499216 -19408354 + L3 LINE CR1 1196 1378 -199 244 317 0 0 chr21 25499317 25499377 -19408193 + MER5A DNA MER1_type 37 96 -93 210 299 26 13 chr21 25499430 25499507 -19408063 + L3 LINE CR1 1494 1571 -6 1651 152 54 130 chr21 25501311 25501772 -19405798 - MSTA LTR MaLR -2 426 1 286 348 152 11 chr21 25502682 25502860 -19404710 - MIR SINE MIR -12 250 48 480 301 60 50 chr21 25504091 25504393 -19403177 - L2 LINE L2 -68 3245 2941 220 220 0 34 chr21 25504498 25504557 -19403013 + (CCA)n Simple_repeat Simple_repeat 1 57 0 21 36 0 0 chr21 25504808 25504836 -19402734 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 25505511 25505533 -19402037 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr21 25505760 25505802 -19401768 + AT_rich Low_complexity Low_complexity 1 42 0 267 250 68 23 chr21 25508169 25508257 -19399313 - L1MC/D LINE L1 -2194 5614 5523 233 172 16 0 chr21 25508342 25508406 -19399164 + GA-rich Low_complexity Low_complexity 1 65 0 224 149 21 0 chr21 25508428 25508475 -19399095 + GA-rich Low_complexity Low_complexity 1 48 0 442 280 115 37 chr21 25508499 25508959 -19398611 - L1M3 LINE L1 -775 5371 4953 279 0 0 0 chr21 25508959 25508990 -19398580 + (TG)n Simple_repeat Simple_repeat 2 32 0 442 280 115 37 chr21 25508990 25509092 -19398478 - L1M3 LINE L1 -1193 4953 4860 212 197 28 42 chr21 25509229 25509300 -19398270 + CT-rich Low_complexity Low_complexity 6 75 0 2130 104 7 17 chr21 25509641 25509939 -19397631 - AluSx SINE Alu -17 295 1 1919 191 8 3 chr21 25510134 25510495 -19397075 - MLT1A1 LTR MaLR -2 363 1 23 0 0 0 chr21 25510612 25510635 -19396935 + AT_rich Low_complexity Low_complexity 1 23 0 677 244 64 17 chr21 25510721 25510955 -19396615 - L1MC4a LINE L1 -287 7521 7277 817 250 5 18 chr21 25510967 25511191 -19396379 + L1MC4a LINE L1 7491 7711 -97 409 17 35 0 chr21 25511288 25511346 -19396224 + (TTA)n Simple_repeat Simple_repeat 2 61 0 2085 84 0 14 chr21 25511348 25511632 -19395938 - AluY SINE Alu -31 280 1 257 284 25 0 chr21 25511732 25511813 -19395757 - HAL1 LINE L1 -919 1588 1506 836 323 67 45 chr21 25511953 25512926 -19394644 - L1MEd LINE L1 -4880 1239 246 203 324 19 56 chr21 25512945 25513053 -19394517 - MIR SINE MIR -106 156 53 191 167 42 14 chr21 25513102 25513174 -19394396 + (TA)n Simple_repeat Simple_repeat 1 74 0 376 250 0 62 chr21 25513478 25513590 -19393980 - U6 snRNA snRNA -1 106 2 235 0 0 54 chr21 25513878 25513915 -19393655 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1084 290 40 40 chr21 25514530 25514607 -19392963 - MLT1E2 LTR MaLR -4 622 546 2251 68 41 3 chr21 25514607 25514901 -19392669 + AluY SINE Alu 3 307 -4 1084 290 40 40 chr21 25514901 25515227 -19392343 - MLT1E2 LTR MaLR -79 547 219 476 285 89 30 chr21 25515509 25515744 -19391826 - L1MC/D LINE L1 -2096 5712 5464 391 298 106 97 chr21 25516089 25516512 -19391058 + L2 LINE L2 2887 3313 0 497 357 19 47 chr21 25516934 25517105 -19390465 - MIR SINE MIR -42 220 55 2120 126 7 0 chr21 25517105 25517406 -19390164 - AluSx SINE Alu -9 303 1 497 357 19 47 chr21 25517406 25517447 -19390123 - MIR SINE MIR -207 55 14 319 175 10 21 chr21 25519044 25519141 -19388429 + GA-rich Low_complexity Low_complexity 3 98 0 292 326 50 33 chr21 25519371 25519492 -19388078 + MIR SINE MIR 73 199 -63 2618 77 40 6 chr21 25519492 25519844 -19387726 - THE1B LTR MaLR 0 364 1 292 326 50 33 chr21 25519844 25519903 -19387667 + MIR SINE MIR 199 256 -6 21 0 0 0 chr21 25520662 25520683 -19386887 + AT_rich Low_complexity Low_complexity 1 21 0 203 314 25 25 chr21 25521967 25522088 -19385482 + CT-rich Low_complexity Low_complexity 2 122 0 413 357 80 13 chr21 25523228 25523452 -19384118 + L2 LINE L2 2652 2890 -424 850 265 28 35 chr21 25524565 25524852 -19382718 + L1ME3A LINE L1 5834 6118 -52 1191 239 13 45 chr21 25525085 25525395 -19382175 - AluJo SINE Alu -2 300 1 2254 122 43 8 chr21 25525421 25525773 -19381797 - THE1B LTR MaLR 0 364 1 744 333 61 10 chr21 25526346 25526640 -19380930 + LTR16A LTR ERVL 113 421 -29 2003 144 16 31 chr21 25526641 25527022 -19380548 - THE1C LTR MaLR 0 375 1 1801 240 50 34 chr21 25527606 25528011 -19379559 - L1MDa LINE L1 -4482 2058 1638 2218 123 28 19 chr21 25528011 25528370 -19379200 + THE1B LTR MaLR 1 362 -2 1801 240 50 34 chr21 25528370 25528559 -19379011 - L1MDa LINE L1 -4902 1638 1454 22 35 0 0 chr21 25528559 25528588 -19378982 + AT_rich Low_complexity Low_complexity 1 29 0 1078 171 22 0 chr21 25528611 25528792 -19378778 - AluJb SINE Alu -118 194 10 1083 229 163 44 chr21 25528801 25529437 -19378133 - L1MDa LINE L1 -5074 1469 790 791 266 83 51 chr21 25529995 25530390 -19377180 - L1MDa LINE L1 -6071 469 62 308 363 93 0 chr21 25530468 25530650 -19376920 + LTR16A LTR ERVL 240 438 -12 1969 157 3 0 chr21 25531831 25532137 -19375433 - AluSx SINE Alu -2 310 4 390 279 66 22 chr21 25533068 25533251 -19374319 - MER95 LTR ERV 0 431 241 2164 63 87 0 chr21 25533825 25534168 -19373402 + AluY SINE Alu 1 368 0 525 252 86 82 chr21 25534431 25534803 -19372767 - LTR49-int LTR ERV1 -250 5895 3840 838 192 76 0 chr21 25534804 25534976 -19372594 + MLT1A1 LTR MaLR 181 365 0 292 303 152 18 chr21 25535146 25535423 -19372147 + MLT1J2 LTR MaLR 102 415 -35 23 33 0 0 chr21 25536175 25536205 -19371365 + AT_rich Low_complexity Low_complexity 1 30 0 2136 130 7 0 chr21 25536936 25537244 -19370326 + AluSg SINE Alu 1 310 0 481 162 181 0 chr21 25537428 25537533 -19370037 + MER63 DNA MER1_type 2 751 -85 1229 20 13 0 chr21 25539764 25539913 -19367657 - L1PA4 LINE L1 -2 6153 6003 12463 237 27 33 chr21 25540969 25542166 -19365404 - L1PB4 LINE L1 -1 6858 5655 2430 120 14 6 chr21 25542166 25542525 -19365045 + THE1B LTR MaLR 1 362 -2 12463 237 27 33 chr21 25542525 25544023 -19363547 - L1PB4 LINE L1 -1204 5655 4149 180 0 0 0 chr21 25544023 25544043 -19363527 + (TTG)n Simple_repeat Simple_repeat 1 20 0 12463 237 27 33 chr21 25544043 25545334 -19362236 - L1PB4 LINE L1 -2710 4149 2852 223 71 48 0 chr21 25545334 25545376 -19362194 + T-rich Low_complexity Low_complexity 2 45 0 12463 237 27 33 chr21 25545376 25547973 -19359597 - L1PB4 LINE L1 -4007 2852 716 26202 76 31 3 chr21 25547973 25551445 -19356125 - HERVL-A1 LTR ERVL -2085 3569 1 2958 79 44 7 chr21 25551445 25551873 -19355697 - MLT2A1 LTR ERVL 0 444 1 238 30 0 0 chr21 25552194 25552227 -19355343 - L1ME4a LINE L1 -12 6109 6077 447 42 28 14 chr21 25552709 25552780 -19354790 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 23 68 0 0 chr21 25553564 25553608 -19353962 + AT_rich Low_complexity Low_complexity 1 44 0 345 197 0 0 chr21 25553976 25554047 -19353523 + (TA)n Simple_repeat Simple_repeat 1 71 0 2196 111 0 0 chr21 25555164 25555452 -19352118 - AluSc SINE Alu -21 288 1 23 0 0 0 chr21 25555500 25555523 -19352047 + AT_rich Low_complexity Low_complexity 1 23 0 906 233 47 11 chr21 25555943 25556218 -19351352 - MER33 DNA MER1_type -35 289 5 218 304 152 18 chr21 25556517 25556629 -19350941 - L2 LINE L2 -1 3271 3145 233 406 56 21 chr21 25556653 25556939 -19350631 + L3 LINE CR1 1281 1576 -1 579 168 11 0 chr21 25558722 25558817 -19348753 - MLT1A1 LTR MaLR 0 365 270 * 645 123 9 19 chr21 25558816 25558922 -19348648 - MLT1A1 LTR MaLR -260 105 1 * 871 172 116 81 chr21 25558922 25559206 -19348364 + MLT1B LTR MaLR 51 344 -46 242 278 111 19 chr21 25560676 25560784 -19346786 + L2 LINE L2 3191 3308 -5 2388 65 10 3 chr21 25561541 25561848 -19345722 - AluY SINE Alu -2 309 1 224 123 18 35 chr21 25562044 25562101 -19345469 + (TTGTG)n Simple_repeat Simple_repeat 4 59 0 186 43 0 0 chr21 25562205 25562228 -19345342 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 204 67 0 0 chr21 25562350 25562380 -19345190 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1460 214 14 0 chr21 25563915 25564200 -19343370 + AluJo SINE Alu 3 291 -21 4387 208 12 4 chr21 25564737 25565697 -19341873 + L1PB1 LINE L1 2142 3109 -3037 1946 128 6 22 chr21 25565714 25565978 -19341592 - THE1B LTR MaLR -57 307 47 538 100 0 0 chr21 25565978 25566058 -19341512 + MADE1 DNA Mariner 1 80 0 1946 128 6 22 chr21 25566058 25566105 -19341465 - THE1B LTR MaLR -317 47 1 7247 207 12 47 chr21 25566106 25567063 -19340507 + L1PB1 LINE L1 3236 4225 -1967 671 107 0 0 chr21 25567063 25567166 -19340404 + AluY SINE Alu 199 301 -10 7247 207 12 47 chr21 25567166 25568760 -19338810 + L1PB1 LINE L1 4225 5778 -414 228 67 0 0 chr21 25568760 25568790 -19338780 + (TA)n Simple_repeat Simple_repeat 1 30 0 7247 207 12 47 chr21 25568790 25569192 -19338378 + L1PB1 LINE L1 5778 6192 0 27 29 0 0 chr21 25569255 25569289 -19338281 + AT_rich Low_complexity Low_complexity 1 34 0 2233 106 0 3 chr21 25569360 25569671 -19337899 + AluSq SINE Alu 1 310 -3 25 65 0 0 chr21 25569977 25570023 -19337547 + AT_rich Low_complexity Low_complexity 1 46 0 1428 119 14 5 chr21 25570023 25570242 -19337328 - AluSq SINE Alu -15 298 78 533 43 0 0 chr21 25570272 25570341 -19337229 - AluY SINE Alu -231 80 12 1351 127 0 5 chr21 25570341 25570546 -19337024 + AluY SINE Alu 78 281 -30 3606 169 22 26 chr21 25572013 25572730 -19334840 + L1MC1 LINE L1 5618 6331 -2 23 33 0 0 chr21 25572804 25572834 -19334736 + AT_rich Low_complexity Low_complexity 1 30 0 253 316 132 40 chr21 25573150 25573302 -19334268 - MIR SINE MIR -13 249 84 294 265 60 0 chr21 25573556 25573639 -19333931 + MIR SINE MIR 97 184 -78 2386 28 0 7 chr21 25574034 25574373 -19333197 - AluY SINE Alu 0 338 2 23 0 0 0 chr21 25574379 25574402 -19333168 + AT_rich Low_complexity Low_complexity 1 23 0 483 313 47 21 chr21 25574520 25574712 -19332858 - MIR SINE MIR -65 197 1 22 35 0 0 chr21 25575513 25575542 -19332028 + AT_rich Low_complexity Low_complexity 1 29 0 2008 122 0 10 chr21 25575549 25575845 -19331725 + AluSg SINE Alu 1 293 -17 43 40 0 13 chr21 25576191 25576222 -19331348 + AT_rich Low_complexity Low_complexity 1 31 -43 1803 160 54 11 chr21 25576222 25576572 -19330998 + MER47A DNA MER2_type 1 365 -1 43 40 0 13 chr21 25576572 25576615 -19330955 + AT_rich Low_complexity Low_complexity 31 74 0 631 178 0 9 chr21 25577912 25578019 -19329551 - AluJb SINE Alu -192 120 15 1722 140 91 26 chr21 25578432 25578782 -19328788 - THE1C LTR MaLR 0 375 3 657 66 50 8 chr21 25579167 25579288 -19328282 + GA-rich Low_complexity Low_complexity 1 126 0 2277 76 0 28 chr21 25579290 25579607 -19327963 + AluY SINE Alu 1 308 -3 788 99 0 8 chr21 25579636 25579757 -19327813 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 55 16 0 0 chr21 25579916 25579978 -19327592 + AT_rich Low_complexity Low_complexity 1 62 0 929 150 162 12 chr21 25580146 25580369 -19327201 - MLT2D LTR ERVL 0 414 67 297 300 30 10 chr21 25581582 25581682 -19325888 - L2 LINE L2 0 3313 3212 351 308 18 47 chr21 25581709 25581878 -19325692 - MLT1I LTR MaLR 0 409 246 285 297 42 51 chr21 25581912 25582030 -19325540 - MLT1I LTR MaLR -235 174 58 5174 110 18 12 chr21 25582551 25582685 -19324885 + L1PA13 LINE L1 5353 5485 -678 2166 119 0 0 chr21 25582685 25582988 -19324582 + AluSx SINE Alu 1 303 -9 5174 110 18 12 chr21 25582988 25583654 -19323916 + L1PA13 LINE L1 5485 6157 -6 250 281 0 0 chr21 25584216 25584280 -19323290 + MER5C DNA MER1_type 61 124 -200 22 56 0 0 chr21 25585806 25585842 -19321728 + AT_rich Low_complexity Low_complexity 1 36 0 279 270 70 0 chr21 25586785 25586885 -19320685 + MER5C DNA MER1_type 165 271 -53 808 209 263 18 chr21 25586917 25587256 -19320314 - L1MD2 LINE L1 -15 6344 5923 312 122 0 0 chr21 25587249 25587298 -19320272 - L1M1 LINE L1 -689 5611 5563 * 1725 204 56 40 chr21 25587316 25587917 -19319653 + L1MA7 LINE L1 5574 6273 -18 312 200 38 0 chr21 25587948 25588028 -19319542 - L1MD2 LINE L1 -426 5933 5851 304 217 33 0 chr21 25588030 25588090 -19319480 - MLT1C LTR MaLR -405 62 1 628 283 89 9 chr21 25588105 25588455 -19319115 - L1M4 LINE L1 -2437 3709 3332 191 330 198 9 chr21 25588570 25588676 -19318894 - L2 LINE L2 0 3272 3147 602 397 64 14 chr21 25588891 25589453 -19318117 - L2 LINE L2 -420 2894 2305 185 386 85 14 chr21 25589529 25589822 -19317748 - L2 LINE L2 -2139 1175 862 324 305 78 7 chr21 25592243 25592384 -19315186 - MLT1J2 LTR MaLR -12 438 288 702 281 94 38 chr21 25593447 25593714 -19313856 + MLT1G1 LTR MaLR 1 282 -313 595 251 143 45 chr21 25593966 25594253 -19313317 + MLT1G1 LTR MaLR 276 590 0 265 275 14 0 chr21 25594580 25594649 -19312921 + L2 LINE L2 3244 3313 0 214 303 53 0 chr21 25594929 25595005 -19312565 - MIR SINE MIR 0 262 183 2591 258 89 34 chr21 25595012 25596203 -19311367 - L1ME1 LINE L1 -7 6159 4908 318 89 0 177 chr21 25596287 25596314 -19311256 + L1MA9 LINE L1 6247 6277 -35 2161 117 3 0 chr21 25596314 25596614 -19310956 - AluSc SINE Alu -8 301 1 318 89 0 177 chr21 25596614 25596665 -19310905 + L1MA9 LINE L1 6277 6311 -1 689 346 57 23 chr21 25596932 25597897 -19309673 - HERV16 LTR ERVL -1386 4378 3358 1890 130 6 13 chr21 25598003 25598318 -19309252 - MER34B LTR ERV1 0 565 253 2050 111 13 27 chr21 25599242 25599540 -19308030 + AluSx SINE Alu 13 306 -6 1476 156 23 8 chr21 25599541 25599797 -19307773 - MER34B LTR ERV1 -305 260 1 580 342 0 0 chr21 25599828 25600012 -19307558 - HERV16 LTR ERVL -2508 3146 2963 728 307 87 53 chr21 25600112 25600548 -19307022 - HERV16 LTR ERVL -2588 2408 1958 644 244 6 26 chr21 25600560 25600716 -19306854 - MER58B DNA MER1_type 0 341 189 324 328 38 27 chr21 25600732 25600915 -19306655 - HERV16 LTR ERVL -4331 665 481 896 196 0 0 chr21 25600915 25601124 -19306446 - AluSg/x SINE Alu 0 346 138 646 270 24 28 chr21 25601128 25601339 -19306231 - HERV16 LTR ERVL -4512 484 275 340 224 15 0 chr21 25601410 25601477 -19306093 - HERV16 LTR ERVL -4828 168 101 489 264 62 39 chr21 25601583 25601761 -19305809 - LTR16A LTR ERVL -35 415 234 781 299 14 71 chr21 25601821 25602172 -19305398 - MLT1H LTR MaLR -217 332 2 193 241 0 35 chr21 25603813 25603871 -19303699 - MIR SINE MIR -83 179 124 776 324 174 29 chr21 25603956 25604884 -19302686 - L2 LINE L2 -112 3201 2132 716 194 0 0 chr21 25605577 25605701 -19301869 + FLAM_C SINE Alu 4 127 -16 360 321 32 20 chr21 25607922 25608171 -19299399 + L1MC4 LINE L1 7791 8042 0 1408 218 20 47 chr21 25608192 25608600 -19298970 + MLT2C1 LTR ERVL 1 397 0 1973 149 0 3 chr21 25608763 25609058 -19298512 - AluJb SINE Alu -18 294 1 22 0 0 0 chr21 25609064 25609086 -19298484 + AT_rich Low_complexity Low_complexity 1 22 0 373 313 30 0 chr21 25611306 25611437 -19296133 - MER20 DNA MER1_type -69 150 16 189 74 0 0 chr21 25612271 25612298 -19295272 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 234 91 0 0 chr21 25612297 25612330 -19295240 + (TA)n Simple_repeat Simple_repeat 1 33 0 346 297 87 0 chr21 25612702 25612840 -19294730 - MER20 DNA MER1_type -54 165 16 2193 101 0 3 chr21 25612909 25613205 -19294365 + AluY SINE Alu 1 295 -16 3792 164 30 6 chr21 25614221 25615060 -19292510 - L1MA8 LINE L1 -329 5962 5103 929 145 0 6 chr21 25615100 25615266 -19292304 + L1MA5 LINE L1 6135 6299 -1 313 328 73 56 chr21 25615464 25615766 -19291804 + L1ME4a LINE L1 5621 5927 -194 459 243 21 32 chr21 25616007 25616286 -19291284 - L1MEc LINE L1 -3774 2766 2444 209 83 28 0 chr21 25616300 25616336 -19291234 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1786 63 29 8 chr21 25616355 25616593 -19290977 - AluY SINE Alu -68 243 1 1933 118 22 0 chr21 25616611 25616881 -19290689 - AluSx SINE Alu -31 281 6 911 154 0 0 chr21 25616959 25617102 -19290468 - MER50 LTR ERV1 -24 710 568 1011 70 0 0 chr21 25617102 25617231 -19290339 + AluY SINE Alu 175 303 -8 2817 172 65 7 chr21 25617232 25617774 -19289796 - MER50 LTR ERV1 -161 573 1 732 259 94 86 chr21 25617818 25618088 -19289482 - L1MEc LINE L1 -4245 2295 2029 2140 101 0 3 chr21 25618088 25618374 -19289196 + AluSq SINE Alu 1 285 -28 732 259 94 86 chr21 25618374 25618550 -19289020 - L1MEc LINE L1 -4511 2029 1842 805 134 28 0 chr21 25618550 25618692 -19288878 + L1MA9 LINE L1 6167 6312 0 732 259 94 86 chr21 25618692 25618753 -19288817 - L1MEc LINE L1 -4698 1842 1783 320 253 0 0 chr21 25618759 25618838 -19288732 + L1MDb LINE L1 938 1016 -5393 30 0 0 0 chr21 25619004 25619034 -19288536 + AT_rich Low_complexity Low_complexity 1 30 0 269 140 40 50 chr21 25619324 25619424 -19288146 + (TTATA)n Simple_repeat Simple_repeat 3 101 0 186 264 42 42 chr21 25619721 25619793 -19287777 + MIR SINE MIR 11 82 -180 32 0 0 0 chr21 25620037 25620069 -19287501 + AT_rich Low_complexity Low_complexity 1 32 0 2342 77 10 0 chr21 25620883 25621181 -19286389 - AluSp SINE Alu -12 301 1 33 66 0 0 chr21 25622139 25622200 -19285370 + AT_rich Low_complexity Low_complexity 1 61 0 812 294 51 25 chr21 25622511 25622965 -19284605 + MLT1H LTR MaLR 13 529 -20 2217 119 3 0 chr21 25624500 25624858 -19282712 + AluSq SINE Alu 1 359 0 334 254 239 0 chr21 25626120 25626250 -19281320 - MIR SINE MIR -64 198 38 22 0 0 0 chr21 25626849 25626871 -19280699 + AT_rich Low_complexity Low_complexity 1 22 0 250 388 68 29 chr21 25627046 25627149 -19280421 + L2 LINE L2 3139 3245 -27 186 43 0 0 chr21 25629063 25629086 -19278484 + (ATG)n Simple_repeat Simple_repeat 1 23 0 337 305 102 37 chr21 25629674 25629861 -19277709 - MIR SINE MIR -62 200 2 21 0 0 0 chr21 25630578 25630599 -19276971 + AT_rich Low_complexity Low_complexity 1 21 0 285 98 0 0 chr21 25632281 25632322 -19275248 + (A)n Simple_repeat Simple_repeat 1 41 0 229 198 25 25 chr21 25632631 25632712 -19274858 + (CATA)n Simple_repeat Simple_repeat 2 82 0 1026 198 0 0 chr21 25633308 25633505 -19274065 - L1PA13 LINE L1 -6 6157 5961 1013 250 122 3 chr21 25633693 25634226 -19273344 + MLT1E1 LTR MaLR 1 654 0 32 67 0 0 chr21 25634325 25634385 -19273185 + AT_rich Low_complexity Low_complexity 1 60 0 1276 256 105 33 chr21 25634446 25634947 -19272623 + MLT1H LTR MaLR 1 567 0 460 355 18 12 chr21 25635314 25635483 -19272087 - L3 LINE CR1 -102 1475 1306 335 117 117 17 chr21 25635510 25635570 -19272000 + MLT1C LTR MaLR 402 467 0 258 275 63 56 chr21 25635705 25635847 -19271723 - ERVL-F LTR ERVL -5600 164 22 285 148 37 25 chr21 25635919 25636000 -19271570 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 1796 281 75 20 chr21 25636016 25636317 -19271253 - MLT2F LTR ERVL -43 620 337 252 0 0 0 chr21 25636317 25636345 -19271225 + (CA)n Simple_repeat Simple_repeat 2 29 0 1796 281 75 20 chr21 25636345 25636631 -19270939 - MLT2F LTR ERVL -326 337 1 233 250 64 116 chr21 25636632 25636804 -19270766 - MLT1G LTR MaLR -418 172 10 180 77 0 0 chr21 25636817 25636843 -19270727 + (TG)n Simple_repeat Simple_repeat 1 26 0 292 233 9 60 chr21 25636844 25636960 -19270610 + L1MC4 LINE L1 7902 8011 -31 303 290 32 0 chr21 25639007 25639100 -19268470 + L1MC4 LINE L1 6614 6709 -1333 339 136 51 34 chr21 25639128 25639305 -19268265 + (TA)n Simple_repeat Simple_repeat 1 180 0 218 422 9 28 chr21 25639488 25639597 -19267973 - L3 LINE CR1 -14 1563 1457 257 330 135 5 chr21 25639613 25639813 -19267757 + MIR SINE MIR 24 249 -13 433 311 96 26 chr21 25639831 25640101 -19267469 - L3 LINE CR1 -125 1452 1164 2433 151 11 16 chr21 25640123 25640559 -19267011 + MER57B LTR ERV1 1 434 0 2114 164 43 32 chr21 25640811 25641358 -19266212 - MLT2A2 LTR ERVL 0 554 1 4236 105 11 8 chr21 25641358 25641977 -19265593 - HERVL-A2 LTR ERVL 0 5654 5034 * 6606 83 11 1 chr21 25641966 25642836 -19264734 - HERVL LTR ERVL -2524 3130 2252 290 93 0 0 chr21 25642830 25642873 -19264697 + HERVL LTR ERVL 5430 5472 -182 * 2345 91 0 0 chr21 25643178 25643474 -19264096 - AluY SINE Alu -14 297 2 2198 103 0 13 chr21 25644165 25644467 -19263103 - AluSg SINE Alu -12 298 1 271 332 41 48 chr21 25644556 25644827 -19262743 + MLT1K LTR MaLR 152 420 -168 2317 249 39 58 chr21 25645187 25646764 -19260806 - L1 LINE L1 -3613 3493 1888 1214 235 82 6 chr21 25646764 25647104 -19260466 + MER47A DNA MER2_type 1 366 0 2317 249 39 58 chr21 25647104 25647464 -19260106 - L1 LINE L1 -5218 1888 1912 2433 77 0 10 chr21 25647464 25647774 -19259796 - AluY SINE Alu -4 307 1 2317 249 39 58 chr21 25647774 25648309 -19259261 - L1 LINE L1 -5193 1913 1369 1363 218 10 17 chr21 25648317 25648610 -19258960 - L1 LINE L1 -6738 292 2 28 29 0 0 chr21 25650788 25650823 -19256747 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr21 25651149 25651179 -19256391 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr21 25651588 25651609 -19255961 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 755 137 131 106 chr21 25652421 25652460 -19255110 - L1MA8 LINE L1 0 6291 6254 2400 69 0 35 chr21 25652460 25652777 -19254793 - AluY SINE Alu -5 306 1 755 137 131 106 chr21 25652777 25653010 -19254560 - L1MA8 LINE L1 -37 6254 6028 2048 134 0 10 chr21 25653353 25653651 -19253919 - AluSx SINE Alu -17 295 1 2008 141 132 8 chr21 25655447 25655903 -19251667 - LTR35 LTR ERV1 -42 576 2 1143 240 55 84 chr21 25655903 25656312 -19251258 - MLT1E2 LTR MaLR -127 499 103 745 111 42 0 chr21 25656391 25656535 -19251035 + CT-rich Low_complexity Low_complexity 3 152 0 256 177 0 48 chr21 25656545 25656607 -19250963 - MLT1E2 LTR MaLR -545 81 23 198 0 0 0 chr21 25658075 25658097 -19249473 + (TG)n Simple_repeat Simple_repeat 2 23 0 1207 131 25 47 chr21 25658861 25659097 -19248473 - L1MA8 LINE L1 -297 6003 5773 232 158 35 0 chr21 25659162 25659219 -19248351 + (TATG)n Simple_repeat Simple_repeat 3 61 0 238 217 0 0 chr21 25659659 25659705 -19247865 - L2 LINE L2 0 3313 3268 699 183 13 125 chr21 25659759 25659911 -19247659 + MLT1A1 LTR MaLR 225 396 0 195 184 0 0 chr21 25660635 25660673 -19246897 + (TA)n Simple_repeat Simple_repeat 2 39 0 2464 181 2 123 chr21 25660681 25661309 -19246261 + MLT2B3 LTR ERVL 1 552 -2 231 162 0 0 chr21 25661912 25661949 -19245621 - MLT1K LTR MaLR 0 588 552 1073 280 106 84 chr21 25662002 25662817 -19244753 - L2 LINE L2 -894 2420 1587 2398 59 0 36 chr21 25662817 25663124 -19244446 + AluY SINE Alu 1 296 -15 32806 68 5 18 chr21 25663213 25668481 -19239089 - L1PA6 LINE L1 -2 6152 952 1090 327 105 12 chr21 25668670 25669477 -19238093 + L2 LINE L2 2355 3221 -92 32 57 0 0 chr21 25669729 25669782 -19237788 + AT_rich Low_complexity Low_complexity 1 53 0 281 305 12 0 chr21 25671141 25671223 -19236347 + MIR SINE MIR 109 191 -71 23 97 0 0 chr21 25671363 25671435 -19236135 + AT_rich Low_complexity Low_complexity 1 72 0 2893 171 94 87 chr21 25671501 25672321 -19235249 + LTR1B LTR ERV1 1 826 0 21 0 0 0 chr21 25672448 25672469 -19235101 + AT_rich Low_complexity Low_complexity 1 21 0 744 160 28 108 chr21 25672810 25673023 -19234547 - L1MA9 LINE L1 -1 6311 6116 256 218 0 0 chr21 25673852 25673907 -19233663 - MLT1J LTR MaLR -317 194 140 1562 188 100 24 chr21 25673907 25674425 -19233145 - MLT2A2 LTR ERVL 0 554 1 1910 217 32 18 chr21 25674939 25675382 -19232188 + MLT1C LTR MaLR 1 449 -18 2389 73 0 29 chr21 25675466 25675781 -19231789 - AluY SINE Alu -5 306 1 22 0 0 0 chr21 25675984 25676006 -19231564 + AT_rich Low_complexity Low_complexity 1 22 0 693 286 34 81 chr21 25676351 25676882 -19230688 + L2 LINE L2 1487 1992 -1322 327 62 15 108 chr21 25677133 25677176 -19230394 - MLT2B1 LTR ERVL 0 520 483 396 88 0 0 chr21 25677176 25677233 -19230337 + (TAGG)n Simple_repeat Simple_repeat 3 59 0 327 62 15 108 chr21 25677233 25677254 -19230316 - MLT2B1 LTR ERVL -37 483 462 1467 163 19 16 chr21 25677266 25677563 -19230007 - MER61B LTR ERV1 -29 396 5 689 53 11 0 chr21 25677563 25677657 -19229913 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1621 247 25 71 chr21 25677667 25678189 -19229381 - MLT2B3 LTR ERVL -56 498 1 1305 325 127 11 chr21 25678197 25678857 -19228713 + L2 LINE L2 2404 3135 -178 315 0 0 0 chr21 25678954 25678989 -19228581 + (TG)n Simple_repeat Simple_repeat 2 36 0 291 322 22 0 chr21 25679566 25679656 -19227914 + L2 LINE L2 3197 3288 -25 22 0 0 0 chr21 25681139 25681161 -19226409 + AT_rich Low_complexity Low_complexity 1 22 0 1016 200 21 108 chr21 25682667 25683047 -19224523 + MLT2C1 LTR ERVL 30 376 -21 347 221 36 7 chr21 25683815 25683955 -19223615 + (TA)n Simple_repeat Simple_repeat 2 145 0 245 308 100 17 chr21 25683998 25684118 -19223452 - MLT1I LTR MaLR 0 409 280 24 0 0 0 chr21 25684591 25684615 -19222955 + AT_rich Low_complexity Low_complexity 1 24 0 2145 184 65 91 chr21 25685086 25685655 -19221915 - MLT2B3 LTR ERVL 0 554 1 185 250 13 0 chr21 25686746 25686822 -19220748 + (CATA)n Simple_repeat Simple_repeat 2 78 0 584 195 7 28 chr21 25687005 25687291 -19220279 + CT-rich Low_complexity Low_complexity 1 279 0 2618 37 0 3 chr21 25687508 25687806 -19219764 - AluY SINE Alu -14 297 1 547 227 81 27 chr21 25687870 25688055 -19219515 + L2 LINE L2 3114 3308 -5 649 196 39 34 chr21 25689466 25689645 -19217925 - Charlie1 DNA MER1_type -2534 227 48 228 167 121 30 chr21 25691742 25691808 -19215762 - MER116 DNA Mariner -2 78 7 273 240 54 54 chr21 25691928 25692057 -19215513 + MIR SINE MIR 133 261 -1 185 271 125 31 chr21 25692631 25692727 -19214843 + L2 LINE L2 3193 3297 -16 35 0 0 0 chr21 25692816 25692851 -19214719 + AT_rich Low_complexity Low_complexity 1 35 0 499 256 78 11 chr21 25693166 25693357 -19214213 - MER3 DNA MER1_type -4 205 2 198 0 0 0 chr21 25693543 25693565 -19214005 + (CA)n Simple_repeat Simple_repeat 2 23 0 207 100 0 0 chr21 25694789 25694819 -19212751 + (CA)n Simple_repeat Simple_repeat 1 30 0 232 213 21 0 chr21 25695168 25695215 -19212355 + CT-rich Low_complexity Low_complexity 1 48 0 180 231 29 0 chr21 25695361 25695465 -19212105 + (TA)n Simple_repeat Simple_repeat 2 108 0 255 364 0 0 chr21 25695814 25695902 -19211668 + MIR SINE MIR 154 241 -21 23 54 0 0 chr21 25696319 25696356 -19211214 + AT_rich Low_complexity Low_complexity 1 37 0 301 311 19 19 chr21 25696626 25696729 -19210841 - MIR SINE MIR 0 262 160 2517 32 0 29 chr21 25696784 25697092 -19210478 - AluY SINE Alu -12 299 1 197 390 0 0 chr21 25697244 25697303 -19210267 - L3 LINE CR1 -137 1440 1382 450 342 71 8 chr21 25697586 25697826 -19209744 + MIR SINE MIR 8 262 0 317 231 8 23 chr21 25697963 25698093 -19209477 + (TA)n Simple_repeat Simple_repeat 1 128 0 182 319 133 24 chr21 25698647 25698813 -19208757 + L2 LINE L2 2877 3060 -212 2313 60 3 17 chr21 25699724 25700024 -19207546 + AluY SINE Alu 1 296 -15 1145 221 5 5 chr21 25700026 25700239 -19207331 + MLT1A1 LTR MaLR 153 365 0 495 204 37 0 chr21 25700346 25700454 -19207116 + LTR57 LTR ERVL 299 410 -1 1939 164 26 3 chr21 25701014 25701361 -19206209 + THE1A LTR MaLR 1 355 0 2579 32 0 22 chr21 25702372 25702685 -19204885 + AluY SINE Alu 2 307 -4 430 261 52 144 chr21 25703045 25703371 -19204199 - L2 LINE L2 -2 3311 3016 193 352 49 25 chr21 25703375 25703537 -19204033 - L2 LINE L2 -27 3286 3121 682 280 48 5 chr21 25704215 25704404 -19203166 - MIR SINE MIR -50 212 16 21 36 0 0 chr21 25704647 25704675 -19202895 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr21 25705167 25705195 -19202375 + (CA)n Simple_repeat Simple_repeat 1 28 0 277 330 0 10 chr21 25706780 25706880 -19200690 - L2 LINE L2 0 3272 3174 335 320 26 33 chr21 25706895 25707048 -19200522 - MER5A DNA MER1_type -1 188 37 241 301 24 0 chr21 25707151 25707234 -19200336 + L2 LINE L2 3229 3313 0 291 366 32 80 chr21 25707238 25707489 -19200081 - L2 LINE L2 -100 3172 2934 213 274 0 0 chr21 25707585 25707636 -19199934 + L2 LINE L2 3262 3312 -1 334 258 12 68 chr21 25708711 25708874 -19198696 + L1 LINE L1 4883 5036 -1110 2443 151 21 31 chr21 25709466 25709891 -19197679 + Tigger2a DNA MER2_type 7 427 -7 727 211 93 120 chr21 25709929 25710336 -19197234 - MSTD LTR MaLR 0 396 1 3500 239 86 31 chr21 25710336 25711864 -19195706 - MSTD-int LTR MaLR 0 1651 1 269 118 20 0 chr21 25711963 25712014 -19195556 + (CA)n Simple_repeat Simple_repeat 1 52 0 388 75 0 0 chr21 25712896 25712949 -19194621 - L1PA6 LINE L1 -87 6067 6015 210 282 0 28 chr21 25714107 25714202 -19193368 + (CATATA)n Simple_repeat Simple_repeat 1 92 0 276 261 43 22 chr21 25714218 25714310 -19193260 - L2 LINE L2 -1639 1675 1582 2470 52 0 13 chr21 25714310 25714620 -19192950 + AluY SINE Alu 6 311 0 32 43 0 0 chr21 25715209 25715255 -19192315 + AT_rich Low_complexity Low_complexity 1 46 0 2547 134 25 7 chr21 25716220 25716660 -19190910 + L1MA9 LINE L1 5865 6312 0 26 74 0 0 chr21 25717130 25717184 -19190386 + AT_rich Low_complexity Low_complexity 1 54 0 234 91 0 0 chr21 25717839 25717872 -19189698 + (TA)n Simple_repeat Simple_repeat 2 34 0 210 158 35 18 chr21 25717923 25717980 -19189590 + (TA)n Simple_repeat Simple_repeat 2 59 0 949 207 0 0 chr21 25718054 25718223 -19189347 + FRAM SINE Alu 1 166 -10 23 0 0 0 chr21 25718233 25718256 -19189314 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr21 25718542 25718569 -19189001 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 25719281 25719302 -19188268 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr21 25721269 25721316 -19186254 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr21 25721646 25721671 -19185899 + AT_rich Low_complexity Low_complexity 1 25 0 266 238 0 16 chr21 25722141 25722204 -19185366 + MLT1A2 LTR MaLR 1 62 -312 301 329 76 63 chr21 25722331 25722632 -19184938 - L2 LINE L2 -1 3312 3008 221 342 40 47 chr21 25722958 25723107 -19184463 + MER5A DNA MER1_type 7 154 -35 23 68 0 0 chr21 25724170 25724214 -19183356 + AT_rich Low_complexity Low_complexity 1 44 0 282 29 0 0 chr21 25724268 25724303 -19183267 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr21 25726019 25726048 -19181522 + AT_rich Low_complexity Low_complexity 1 29 0 753 205 0 13 chr21 25726258 25726414 -19181156 + FAM SINE Alu 13 166 -19 414 316 53 8 chr21 25727005 25727138 -19180432 - MER91C DNA MER1_type -1 139 1 1700 166 27 3 chr21 25727924 25728396 -19179174 + AluSx SINE Alu 1 312 0 22 0 0 0 chr21 25728549 25728571 -19178999 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr21 25730326 25730377 -19177193 + AT_rich Low_complexity Low_complexity 1 51 0 295 373 16 8 chr21 25730754 25730880 -19176690 - MER5A DNA MER1_type 0 189 63 288 316 66 37 chr21 25730993 25731129 -19176441 + L2 LINE L2 3172 3311 -2 281 218 18 0 chr21 25731528 25731583 -19175987 - MER45 DNA AcHobo 0 1581 1526 909 311 65 57 chr21 25731629 25732169 -19175401 - MER45C DNA AcHobo -405 548 5 677 221 68 0 chr21 25732204 25732367 -19175203 - MSTD LTR MaLR 0 396 223 2239 109 0 3 chr21 25732495 25732806 -19174764 - AluSg SINE Alu 0 310 1 1660 254 26 73 chr21 25733088 25733269 -19174301 + L1M4 LINE L1 3133 3321 -2825 2418 63 0 31 chr21 25733269 25733586 -19173984 + AluY SINE Alu 5 311 0 1660 254 26 73 chr21 25733586 25734161 -19173409 + L1M4 LINE L1 3321 3854 -2292 1759 98 64 26 chr21 25735001 25735267 -19172303 + AluY SINE Alu 3 278 -33 387 0 0 0 chr21 25735270 25735313 -19172257 + (CA)n Simple_repeat Simple_repeat 2 44 0 324 336 84 0 chr21 25736041 25736184 -19171386 + MIR SINE MIR 88 242 -20 661 215 0 8 chr21 25736366 25736487 -19171083 + FLAM_A SINE Alu 1 120 -13 1177 133 39 12 chr21 25737376 25737670 -19169900 - THE1B LTR MaLR 0 364 1 871 211 67 0 chr21 25738335 25738544 -19169026 - L1MA8 LINE L1 -1 6290 6068 1407 173 119 0 chr21 25738946 25739223 -19168347 - AluSx SINE Alu -2 310 1 348 83 0 0 chr21 25740705 25740753 -19166817 + (CA)n Simple_repeat Simple_repeat 2 49 0 28 0 0 0 chr21 25741244 25741272 -19166298 + AT_rich Low_complexity Low_complexity 1 28 0 1452 195 0 15 chr21 25741457 25741729 -19165841 + AluJo SINE Alu 1 268 -44 1246 215 60 39 chr21 25741874 25742227 -19165343 - MLT1A2 LTR MaLR -7 498 1 1836 242 39 17 chr21 25742227 25742690 -19164880 - MLT1A2-int LTR MaLR 0 1735 1263 294 231 0 33 chr21 25742721 25742812 -19164758 - MLT1A2-int LTR MaLR -968 767 680 1508 204 88 65 chr21 25742947 25743379 -19164191 - MLT1A2-int LTR MaLR -639 732 291 580 182 9 0 chr21 25743383 25743493 -19164077 - MLT1A2-int LTR MaLR -1620 115 5 1224 230 80 28 chr21 25743499 25743851 -19163719 - MLT1A2 LTR MaLR -2 372 3 559 302 84 33 chr21 25744247 25744598 -19162972 + MLT1G1 LTR MaLR 1 418 -177 21 0 0 0 chr21 25744730 25744751 -19162819 + AT_rich Low_complexity Low_complexity 1 21 0 303 146 22 135 chr21 25744885 25744974 -19162596 - L1MA9 LINE L1 -67 6245 6167 183 293 10 91 chr21 25744982 25745081 -19162489 + L2 LINE L2 3208 3298 -15 210 171 0 0 chr21 25746071 25746112 -19161458 + (CA)n Simple_repeat Simple_repeat 1 41 0 193 93 0 47 chr21 25746550 25746593 -19160977 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 206 341 0 11 chr21 25747894 25747982 -19159588 - MIR SINE MIR -4 258 172 1666 139 49 85 chr21 25747983 25748146 -19159424 + THE1C LTR MaLR 1 168 -207 2289 74 0 0 chr21 25748146 25748429 -19159141 - AluY SINE Alu -2 309 27 1666 139 49 85 chr21 25748429 25748654 -19158916 + THE1C LTR MaLR 168 375 0 3992 131 107 9 chr21 25748654 25749347 -19158223 + THE1C-int LTR MaLR 1 761 -819 273 366 64 29 chr21 25749838 25750010 -19157560 - L2 LINE L2 -540 2774 2597 536 299 139 0 chr21 25751770 25751971 -19155599 + MIR SINE MIR 34 262 0 589 159 0 9 chr21 25752013 25752120 -19155450 + MLT2C2 LTR ERVL 1 106 -358 272 243 27 14 chr21 25752056 25752130 -19155440 + MLT1E3 LTR MaLR 65 139 -485 * 8089 67 4 0 chr21 25752130 25753407 -19154163 - L1PA6 LINE L1 -559 5595 4314 4143 78 0 0 chr21 25753407 25753943 -19153627 + L1PA6 LINE L1 5605 6141 -13 495 0 0 0 chr21 25753943 25753998 -19153572 + (TA)n Simple_repeat Simple_repeat 1 55 0 953 193 113 42 chr21 25753998 25754051 -19153519 + MLT2C2 LTR ERVL 97 145 -319 1893 111 41 4 chr21 25754051 25754343 -19153227 + AluSc SINE Alu 1 302 0 953 193 113 42 chr21 25754343 25754526 -19153044 + MLT2C2 LTR ERVL 145 351 -113 231 61 0 0 chr21 25754533 25754566 -19153004 + (TC)n Simple_repeat Simple_repeat 2 34 0 192 162 60 17 chr21 25754565 25754682 -19152888 + (TA)n Simple_repeat Simple_repeat 1 122 0 * 332 165 23 45 chr21 25754693 25754826 -19152744 + (TA)n Simple_repeat Simple_repeat 2 131 0 269 300 194 12 chr21 25754847 25755017 -19152553 - L2 LINE L2 0 3313 3113 34 24 0 0 chr21 25755265 25755306 -19152264 + AT_rich Low_complexity Low_complexity 1 41 0 271 189 57 66 chr21 25755747 25755853 -19151717 - HAL1b LINE L1 -479 869 765 251 354 62 0 chr21 25756967 25757063 -19150507 + L2 LINE L2 2941 3042 -271 486 284 49 22 chr21 25757152 25757377 -19150193 - HAL1 LINE L1 -863 1644 1414 379 297 99 45 chr21 25757654 25757800 -19149770 - HAL1 LINE L1 -1260 1247 1083 2226 104 27 30 chr21 25757800 25758165 -19149405 + THE1B LTR MaLR 1 364 0 379 297 99 45 chr21 25758165 25758240 -19149330 - HAL1 LINE L1 -1424 1083 1014 1379 257 58 2 chr21 25758277 25758670 -19148900 + MLT1C LTR MaLR 53 467 0 916 331 47 43 chr21 25760213 25760705 -19146865 + L2 LINE L2 2405 2898 -416 216 0 0 0 chr21 25760815 25760839 -19146731 + (T)n Simple_repeat Simple_repeat 1 24 0 1788 131 0 15 chr21 25760839 25761099 -19146471 - AluSx SINE Alu -56 256 1 662 323 62 19 chr21 25761099 25761359 -19146211 + L2 LINE L2 3037 3307 -6 316 300 100 0 chr21 25761453 25761593 -19145977 + MLT1L LTR MaLR 314 467 -148 386 225 110 88 chr21 25761847 25762029 -19145541 + MIR SINE MIR 1 186 -76 483 134 0 0 chr21 25763168 25763250 -19144320 - AluSp/q SINE Alu 0 313 232 23 24 0 24 chr21 25764217 25764237 -19143333 + AT_rich Low_complexity Low_complexity 1 20 -20 1683 182 0 17 chr21 25764237 25764528 -19143042 - AluJb SINE Alu -26 286 1 23 24 0 24 chr21 25764528 25764548 -19143022 + AT_rich Low_complexity Low_complexity 20 40 0 527 244 54 66 chr21 25764628 25764767 -19142803 - MER112 DNA MER1_type -20 240 104 243 61 0 0 chr21 25764767 25764800 -19142770 + (TG)n Simple_repeat Simple_repeat 1 33 0 527 244 54 66 chr21 25764800 25764902 -19142668 - MER112 DNA MER1_type -156 104 2 545 352 57 8 chr21 25765346 25765593 -19141977 + MIR SINE MIR 4 262 0 273 182 0 0 chr21 25765873 25765928 -19141642 + GA-rich Low_complexity Low_complexity 3 57 0 12803 218 27 24 chr21 25766492 25769472 -19138098 + L1PB3 LINE L1 350 3420 -2791 1564 181 0 14 chr21 25769472 25769749 -19137821 - AluJo SINE Alu -39 273 1 12803 218 27 24 chr21 25769749 25772234 -19135336 + L1PB3 LINE L1 3420 5895 -316 1600 193 21 32 chr21 25772237 25772513 -19135057 + L1PB3 LINE L1 5784 6056 -98 2112 102 3 51 chr21 25772513 25772828 -19134742 - AluSx SINE Alu -12 300 1 1600 193 21 32 chr21 25772828 25772924 -19134646 + L1PB3 LINE L1 6056 6152 -2 334 296 48 0 chr21 25773119 25773244 -19134326 + L1ME LINE L1 5505 5635 -535 6593 82 11 1 chr21 25773324 25774670 -19132900 + L1PA8 LINE L1 4812 6172 0 577 204 7 0 chr21 25774832 25774974 -19132596 - L1MA6 LINE L1 -4 6296 6154 1285 195 152 3 chr21 25774977 25775280 -19132290 + L1MA5 LINE L1 5796 6143 -157 7726 23 1 0 chr21 25775293 25776322 -19131248 + L1PA3 LINE L1 5126 6155 0 258 56 0 0 chr21 25776377 25776413 -19131157 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 245 345 76 48 chr21 25776868 25777117 -19130453 + MLT1L LTR MaLR 211 466 -149 267 268 0 12 chr21 25777259 25777341 -19130229 + L1 LINE L1 3843 3923 -2223 21 36 0 0 chr21 25781376 25781404 -19126166 + AT_rich Low_complexity Low_complexity 1 28 0 2502 124 3 0 chr21 25782511 25782874 -19124696 - THE1B LTR MaLR 0 364 1 9807 127 25 30 chr21 25782874 25784461 -19123109 - THE1B-int LTR MaLR 0 1580 1 2358 128 23 0 chr21 25784463 25784815 -19122755 - THE1B LTR MaLR -4 360 1 2308 245 57 36 chr21 25785686 25786512 -19121058 - L1MC4a LINE L1 0 7808 6966 516 281 38 12 chr21 25786522 25786741 -19120829 - L1MC4a LINE L1 -1083 6725 6544 * 2039 255 64 65 chr21 25786740 25787911 -19119659 - L1MC4a LINE L1 -19 6147 5773 1314 218 8 0 chr21 25787923 25788184 -19119386 - AluJo SINE Alu -49 263 1 23 0 0 0 chr21 25788192 25788215 -19119355 + AT_rich Low_complexity Low_complexity 1 23 0 580 249 122 51 chr21 25788537 25788734 -19118836 + MIR SINE MIR 48 258 -4 258 116 0 0 chr21 25789305 25789348 -19118222 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr21 25789569 25789604 -19117966 + AT_rich Low_complexity Low_complexity 1 35 0 307 352 116 4 chr21 25789709 25789942 -19117628 - L2 LINE L2 -189 3083 2825 303 28 0 0 chr21 25790413 25790449 -19117121 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1935 131 0 7 chr21 25790449 25790731 -19116839 - AluSx SINE Alu -32 280 1 311 323 119 23 chr21 25790769 25791113 -19116457 - L2 LINE L2 -1061 2253 1877 406 221 23 0 chr21 25791131 25791217 -19116353 + MLT1B LTR MaLR 1 88 -302 1273 144 0 51 chr21 25791221 25791384 -19116186 + L1MA4 LINE L1 6023 6170 -130 2027 125 3 10 chr21 25791384 25791681 -19115889 + AluSx SINE Alu 1 295 -17 1273 144 0 51 chr21 25791681 25791774 -19115796 + L1MA4 LINE L1 6170 6266 -34 994 176 79 93 chr21 25791790 25792007 -19115563 + MLT1B LTR MaLR 113 327 -63 2207 106 0 3 chr21 25792007 25792310 -19115260 + AluSc SINE Alu 1 302 -7 994 176 79 93 chr21 25792310 25792371 -19115199 + MLT1B LTR MaLR 327 387 -3 741 97 194 0 chr21 25792486 25792610 -19114960 - AluSx SINE Alu -8 301 154 610 112 0 0 chr21 25792610 25792699 -19114871 - AluSx SINE Alu -223 89 1 188 428 26 48 chr21 25792985 25793214 -19114356 - L2 LINE L2 -63 3209 2986 1388 250 157 14 chr21 25793554 25793994 -19113576 - MLT1D LTR MaLR 0 505 3 287 264 73 0 chr21 25794003 25794113 -19113457 - MLT1D-int LTR MaLR -7 1364 1247 23 33 0 0 chr21 25794170 25794200 -19113370 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr21 25794697 25794724 -19112846 + AT_rich Low_complexity Low_complexity 1 27 0 2152 172 113 28 chr21 25795335 25795841 -19111729 - L1MC3 LINE L1 -438 7347 6799 244 309 48 88 chr21 25796711 25797005 -19110565 - L2 LINE L2 -16 3297 3016 315 332 86 97 chr21 25797058 25797614 -19109956 + L2 LINE L2 2721 3272 0 752 293 0 11 chr21 25798111 25798285 -19109285 + MER5B DNA MER1_type 7 178 0 26 30 0 0 chr21 25798384 25798417 -19109153 + AT_rich Low_complexity Low_complexity 1 33 0 1940 125 24 3 chr21 25799495 25799790 -19107780 + AluSx SINE Alu 1 301 -11 663 186 64 41 chr21 25800521 25800693 -19106877 + MLT1A1 LTR MaLR 1 176 -189 714 120 0 0 chr21 25800694 25800819 -19106751 + (TC)n Simple_repeat Simple_repeat 2 126 0 383 291 46 46 chr21 25800822 25800997 -19106573 + MLT1A1 LTR MaLR 205 379 -11 977 247 112 47 chr21 25802360 25802759 -19104811 + MLT1C LTR MaLR 11 435 -32 528 111 0 12 chr21 25802759 25802840 -19104730 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr21 25803958 25803980 -19103590 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr21 25804468 25804517 -19103053 + AT_rich Low_complexity Low_complexity 1 49 0 382 314 5 0 chr21 25805058 25805274 -19102296 + (CAGAGA)n Simple_repeat Simple_repeat 1 217 0 296 333 0 7 chr21 25805276 25805429 -19102141 + GA-rich Low_complexity Low_complexity 2 153 0 220 238 66 0 chr21 25805433 25805555 -19102015 + (CAGAGA)n Simple_repeat Simple_repeat 4 133 0 194 286 29 6 chr21 25805587 25805762 -19101808 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 247 254 14 0 chr21 25806123 25806194 -19101376 + MER94 DNA DNA 1 72 -62 442 208 130 16 chr21 25806588 25806780 -19100790 + MER114 LTR ERV 120 333 -315 319 253 20 10 chr21 25807010 25807109 -19100461 + MER114 LTR ERV 310 409 -239 14079 23 0 1 chr21 25807111 25809536 -19098034 + L1PA2 LINE L1 3730 6155 0 1737 161 57 0 chr21 25809744 25810023 -19097547 - AluJb SINE Alu -17 295 1 368 269 102 62 chr21 25810274 25810549 -19097021 - LTR40b LTR ERVL -1 461 176 2240 164 10 8 chr21 25810594 25810996 -19096574 + MER57A LTR ERV1 1 403 0 362 169 0 0 chr21 25811606 25811708 -19095862 - AluJ/FRAM SINE Alu 0 330 229 481 43 0 14 chr21 25811989 25812058 -19095512 - L1PA2 LINE L1 0 6155 6088 3650 16 0 0 chr21 25812058 25812537 -19095033 + L1P1 LINE L1 4957 5435 -720 209 281 12 0 chr21 25813000 25813082 -19094488 + (TA)n Simple_repeat Simple_repeat 2 84 0 1674 187 0 0 chr21 25813253 25813520 -19094050 + AluJo SINE Alu 1 267 -45 467 250 23 58 chr21 25814227 25814399 -19093171 - MLT1H LTR MaLR -2 547 382 838 209 18 0 chr21 25815276 25815439 -19092131 + FAM SINE Alu 2 167 -8 2546 64 0 0 chr21 25816397 25816741 -19090829 - AluY SINE Alu 0 344 1 1521 213 0 24 chr21 25817271 25817567 -19090003 + AluJo SINE Alu 1 289 -23 25 51 0 0 chr21 25818161 25818200 -19089370 + AT_rich Low_complexity Low_complexity 1 39 0 281 147 53 35 chr21 25818931 25819101 -19088469 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 30 0 0 0 chr21 25819106 25819136 -19088434 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr21 25819223 25819262 -19088308 + AT_rich Low_complexity Low_complexity 1 39 0 290 297 51 36 chr21 25819313 25819508 -19088062 - L1MC/D LINE L1 -2032 5776 5579 452 193 0 53 chr21 25819707 25819894 -19087676 + GA-rich Low_complexity Low_complexity 3 179 0 22 35 0 0 chr21 25820416 25820445 -19087125 + AT_rich Low_complexity Low_complexity 1 29 0 317 265 61 10 chr21 25820767 25820865 -19086705 + L2 LINE L2 3192 3294 -19 393 203 51 51 chr21 25821838 25821956 -19085614 + MIR SINE MIR 35 152 -110 351 331 31 8 chr21 25822214 25822344 -19085226 + L2 LINE L2 3177 3309 -4 2045 138 0 0 chr21 25822632 25822922 -19084648 - AluSx SINE Alu -22 290 1 4547 51 0 130 chr21 25823521 25824250 -19083320 + L1PA7 LINE L1 5517 6150 -4 2336 242 57 8 chr21 25824630 25825224 -19082346 - MLT1E2 LTR MaLR -3 623 1 356 378 86 11 chr21 25825816 25826094 -19081476 + L2 LINE L2 2889 3187 -126 229 200 0 108 chr21 25828635 25828700 -19078870 + LTR33 LTR ERVL 460 517 -4 990 161 0 0 chr21 25828749 25828922 -19078648 - AluSg/x SINE Alu 0 307 135 978 289 38 31 chr21 25829259 25829650 -19077920 + MLT1I LTR MaLR 16 409 0 27 29 0 0 chr21 25830907 25830941 -19076629 + AT_rich Low_complexity Low_complexity 1 34 0 4521 94 22 12 chr21 25831040 25831719 -19075851 - L1PA14 LINE L1 0 6161 5476 24384 158 12 14 chr21 25831722 25838142 -19069428 - L1PA8 LINE L1 -14 6473 1 4296 182 23 24 chr21 25838142 25838193 -19069377 - L1PA14 LINE L1 -676 5485 5435 207 25 75 0 chr21 25838193 25838233 -19069337 + (TTG)n Simple_repeat Simple_repeat 3 45 0 1507 136 0 44 chr21 25838236 25838486 -19069084 - AluSx SINE Alu -36 276 38 4296 182 23 24 chr21 25838486 25838542 -19069028 - L1PA14 LINE L1 -728 5433 5378 3240 50 0 0 chr21 25838542 25838944 -19068626 - L1PA5 LINE L1 0 6154 5753 4296 182 23 24 chr21 25838944 25839921 -19067649 - L1PA14 LINE L1 -783 5378 4398 270 0 0 0 chr21 25840097 25840127 -19067443 + (TG)n Simple_repeat Simple_repeat 2 31 0 181 287 11 69 chr21 25840265 25840352 -19067218 + L2 LINE L2 2881 2962 -352 29 28 0 0 chr21 25840658 25840694 -19066876 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr21 25840825 25840853 -19066717 + AT_rich Low_complexity Low_complexity 1 28 0 285 336 61 0 chr21 25840955 25841086 -19066484 - MIR SINE MIR -8 254 116 209 317 129 10 chr21 25841754 25841855 -19065715 - MIR SINE MIR -118 144 32 189 175 0 0 chr21 25842914 25842954 -19064616 + (CCA)n Simple_repeat Simple_repeat 3 42 0 3850 191 101 106 chr21 25843776 25844342 -19063228 - L1MC3 LINE L1 -20 7765 7198 254 281 22 11 chr21 25844342 25844431 -19063139 - MLT1F1 LTR MaLR -436 131 42 3850 191 101 106 chr21 25844431 25845092 -19062478 - L1MC3 LINE L1 -587 7198 6456 5466 170 19 23 chr21 25845095 25846726 -19060844 - L1PA16 LINE L1 0 6166 4552 3804 274 49 33 chr21 25846725 25847478 -19060092 - L1MCb LINE L1 -2220 4344 3605 * 2419 63 7 0 chr21 25847478 25847780 -19059790 - AluY SINE Alu -7 304 1 3804 274 49 33 chr21 25847780 25848368 -19059202 - L1MCb LINE L1 -2959 3605 3028 1338 184 73 57 chr21 25848368 25848722 -19058848 + MLT1A1 LTR MaLR 3 362 -3 3804 274 49 33 chr21 25848722 25850048 -19057522 - L1MCb LINE L1 -3536 3028 1725 1348 186 136 9 chr21 25850048 25850371 -19057199 + THE1B LTR MaLR 1 364 0 3804 274 49 33 chr21 25850371 25851788 -19055782 - L1MCb LINE L1 -4839 1725 3 22 0 0 0 chr21 25851911 25851933 -19055637 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr21 25852152 25852182 -19055388 + AT_rich Low_complexity Low_complexity 1 30 0 641 278 32 9 chr21 25852414 25852630 -19054940 + MER58A DNA MER1_type 1 221 -3 344 293 0 9 chr21 25854229 25854335 -19053235 - MLT1K LTR MaLR 0 588 484 1742 228 88 26 chr21 25854711 25855167 -19052403 + MLT2B1 LTR ERVL 2 485 -35 227 209 0 0 chr21 25855216 25855259 -19052311 + MLT2C2 LTR ERVL 422 464 0 1793 85 40 0 chr21 25855768 25856015 -19051555 + AluY SINE Alu 42 298 -13 185 250 21 0 chr21 25856218 25856266 -19051304 - L2 LINE L2 -3 3269 3221 2464 59 7 0 chr21 25856371 25856675 -19050895 - AluY SINE Alu -5 306 1 729 364 107 25 chr21 25857356 25857952 -19049618 + L2 LINE L2 16 660 -2654 316 199 0 31 chr21 25857960 25858121 -19049449 + (TA)n Simple_repeat Simple_repeat 2 157 0 352 296 17 11 chr21 25858163 25858339 -19049231 + (TA)n Simple_repeat Simple_repeat 1 177 0 370 291 17 11 chr21 25858378 25858742 -19048828 + (TA)n Simple_repeat Simple_repeat 1 366 0 240 59 0 0 chr21 25858773 25858807 -19048763 + (TA)n Simple_repeat Simple_repeat 2 35 0 213 309 12 12 chr21 25858825 25858909 -19048661 + L2 LINE L2 695 778 -2536 3644 141 3 2 chr21 25859035 25859826 -19047744 + L1PB1 LINE L1 4990 5781 -370 263 162 0 59 chr21 25859811 25859879 -19047691 + L1MC4 LINE L1 6639 6702 -1340 * 300 154 0 0 chr21 25859898 25859950 -19047620 + (CA)n Simple_repeat Simple_repeat 2 53 0 2480 103 0 6 chr21 25859950 25860310 -19047260 + L1PB1 LINE L1 5791 6148 -3 2081 99 0 29 chr21 25860324 25860637 -19046933 + L1P LINE L1 2008 2311 -3835 2062 70 0 28 chr21 25860650 25860934 -19046636 + AluY SINE Alu 35 310 -1 261 266 25 0 chr21 25862103 25862182 -19045388 - MER115 DNA AcHobo 0 693 613 364 286 65 32 chr21 25862215 25862369 -19045201 - MER5B DNA MER1_type -7 171 13 4707 137 38 56 chr21 25863658 25864569 -19043001 + L1MA5A LINE L1 5398 6292 -5 229 167 0 0 chr21 25864921 25864963 -19042607 + L1MA4A LINE L1 6258 6299 -4 780 225 171 0 chr21 25865069 25865256 -19042314 - MER20 DNA MER1_type 0 219 1 421 292 145 27 chr21 25865845 25866177 -19041393 + HAL1 LINE L1 1439 1809 -698 504 82 0 0 chr21 25866397 25866470 -19041100 + L1PA2 LINE L1 6083 6155 0 2455 51 0 10 chr21 25866618 25866929 -19040641 - AluY SINE Alu -3 308 1 1142 261 85 10 chr21 25866990 25867392 -19040178 - L1ME1 LINE L1 -16 6150 5719 262 198 37 25 chr21 25867567 25867648 -19039922 + HAL1 LINE L1 1440 1521 -986 1951 185 15 61 chr21 25867696 25868156 -19039414 + MLT1D-int LTR MaLR 222 660 -711 1124 292 79 49 chr21 25868203 25868799 -19038771 + MLT1D-int LTR MaLR 651 1264 -107 1516 209 92 63 chr21 25868814 25869239 -19038331 + MLT1D LTR MaLR 35 471 -34 323 225 0 0 chr21 25869704 25869775 -19037795 + MLT1D LTR MaLR 435 505 0 444 273 80 27 chr21 25869776 25869963 -19037607 + HAL1 LINE L1 1596 1792 -715 204 209 0 0 chr21 25870174 25870217 -19037353 + (CAA)n Simple_repeat Simple_repeat 2 44 0 219 69 0 0 chr21 25870259 25870288 -19037282 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 261 42 0 chr21 25870310 25870374 -19037196 - MIR SINE MIR -70 138 86 315 307 126 21 chr21 25872026 25872264 -19035306 + L2 LINE L2 2070 2332 -982 500 329 86 39 chr21 25872702 25873033 -19034537 + L2 LINE L2 2938 3289 -24 1928 109 26 23 chr21 25873033 25873335 -19034235 - AluSp SINE Alu -10 303 1 500 329 86 39 chr21 25873335 25873362 -19034208 + L2 LINE L2 3289 3313 0 266 284 71 8 chr21 25873384 25873511 -19034059 + HAL1b LINE L1 794 928 -420 22 88 0 0 chr21 25873869 25873926 -19033644 + AT_rich Low_complexity Low_complexity 1 57 0 25 0 0 0 chr21 25874700 25874725 -19032845 + AT_rich Low_complexity Low_complexity 1 25 0 1495 142 93 79 chr21 25874988 25875354 -19032216 + THE1C LTR MaLR 5 375 0 25 31 0 0 chr21 25875544 25875576 -19031994 + AT_rich Low_complexity Low_complexity 1 32 0 2323 120 25 6 chr21 25876043 25876400 -19031170 - THE1B LTR MaLR 0 364 1 1705 266 70 40 chr21 25876678 25877057 -19030513 - MLT1G LTR MaLR 0 590 187 1644 190 89 6 chr21 25877057 25877394 -19030176 + MLT1A1 LTR MaLR 1 365 0 1705 266 70 40 chr21 25877394 25877585 -19029985 - MLT1G LTR MaLR -403 187 3 262 228 114 94 chr21 25877587 25877736 -19029834 - MLT1G-int LTR MaLR 0 1371 1220 459 0 0 0 chr21 25879284 25879335 -19028235 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 373 119 341 48 chr21 25880864 25880990 -19026580 - MSTA LTR MaLR -265 163 1 1994 115 24 3 chr21 25882049 25882336 -19025234 - THE1B LTR MaLR -9 355 63 768 213 30 0 chr21 25883585 25883749 -19023821 + L1PB4 LINE L1 5980 6148 -8 26 74 0 0 chr21 25883846 25883900 -19023670 + AT_rich Low_complexity Low_complexity 1 54 0 260 325 119 46 chr21 25884691 25884993 -19022577 - LTR16C LTR ERVL -72 419 96 1639 264 54 85 chr21 25885066 25885136 -19022434 - L1MDa LINE L1 -2741 3799 3728 986 132 0 6 chr21 25885136 25885295 -19022275 + L1PA14 LINE L1 5998 6155 -6 1639 264 54 85 chr21 25885295 25886543 -19021027 - L1MDa LINE L1 -2812 3728 2522 2237 101 7 3 chr21 25886613 25886920 -19020650 - AluSg SINE Alu -2 308 1 690 302 21 4 chr21 25886920 25887162 -19020408 - L1MDa LINE L1 -4566 2155 1910 256 75 19 57 chr21 25887172 25887225 -19020345 + (TA)n Simple_repeat Simple_repeat 1 51 0 411 21 0 0 chr21 25887297 25887345 -19020225 + (TA)n Simple_repeat Simple_repeat 1 48 0 345 312 82 39 chr21 25887507 25888020 -19019550 - L1MDa LINE L1 -4711 1829 1294 1102 139 53 0 chr21 25889201 25889410 -19018160 - L1MA8 LINE L1 -7 6284 6065 206 283 0 0 chr21 25889433 25889493 -19018077 + (CTTTA)n Simple_repeat Simple_repeat 5 64 0 24 67 0 0 chr21 25889563 25889608 -19017962 + AT_rich Low_complexity Low_complexity 1 45 0 31 26 0 0 chr21 25889802 25889840 -19017730 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr21 25890734 25890756 -19016814 + AT_rich Low_complexity Low_complexity 1 22 0 277 231 0 0 chr21 25890761 25890813 -19016757 - MLT1I LTR MaLR -7 402 351 214 299 0 11 chr21 25891159 25891246 -19016324 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 3435 220 38 32 chr21 25891538 25892347 -19015223 + L1 LINE L1 28 841 -6327 661 143 17 8 chr21 25892348 25892467 -19015103 + L1 LINE L1 4698 4817 -2350 * 19521 46 3 1 chr21 25892457 25894926 -19012644 + L1P LINE L1 2868 5342 -804 2165 155 40 5 chr21 25894926 25895342 -19012228 + L1MA5 LINE L1 5859 6298 -2 1971 145 0 16 chr21 25895353 25895670 -19011900 + AluSx SINE Alu 1 312 0 1551 184 14 20 chr21 25895887 25896181 -19011389 + AluJb SINE Alu 5 296 -16 23 0 0 0 chr21 25896232 25896255 -19011315 + AT_rich Low_complexity Low_complexity 1 23 0 741 257 0 0 chr21 25897005 25897157 -19010413 - FRAM SINE Alu -14 152 1 191 339 124 8 chr21 25897921 25898042 -19009528 + MIR3 SINE MIR 74 208 0 1620 160 108 15 chr21 25898222 25898565 -19009005 - THE1C LTR MaLR 0 375 1 636 300 4 25 chr21 25898632 25898872 -19008698 + L1ME1 LINE L1 5927 6161 -5 230 231 58 0 chr21 25899209 25899261 -19008309 + L2 LINE L2 3217 3271 -1 25 31 0 0 chr21 25899399 25899431 -19008139 + AT_rich Low_complexity Low_complexity 1 32 0 651 315 95 13 chr21 25900228 25900460 -19007110 - MIR SINE MIR -2 260 10 692 308 39 5 chr21 25903182 25903419 -19004151 - MIR SINE MIR -16 246 2 2456 144 51 21 chr21 25905101 25905574 -19001996 - LTR45B LTR ERV1 0 489 3 269 237 8 51 chr21 25905797 25905915 -19001655 + MLT2E LTR ERVL 514 626 -2 843 285 54 64 chr21 25906330 25907091 -19000479 - L1ME3 LINE L1 -260 6400 5650 2382 46 3 0 chr21 25907132 25907439 -19000131 + AluY SINE Alu 1 308 0 230 243 0 14 chr21 25910134 25910204 -18997366 + MLT1H LTR MaLR 249 317 -232 29 0 0 0 chr21 25910610 25910639 -18996931 + AT_rich Low_complexity Low_complexity 1 29 0 2605 198 229 33 chr21 25910787 25911639 -18995931 - LTR28 LTR ERV1 -1 1019 1 29 28 0 0 chr21 25912940 25912976 -18994594 + AT_rich Low_complexity Low_complexity 1 36 0 727 335 24 11 chr21 25913787 25914074 -18993496 - L2 LINE L2 -1080 2234 1944 847 191 21 63 chr21 25915334 25915523 -18992047 + AluJb SINE Alu 113 293 -19 2018 121 3 10 chr21 25915722 25916011 -18991559 - AluSx SINE Alu -25 287 1 4352 258 89 55 chr21 25916571 25918737 -18988833 - L1ME3 LINE L1 -2192 4452 2360 1893 60 48 8 chr21 25918737 25918985 -18988585 + AluY SINE Alu 38 295 -16 4352 258 89 55 chr21 25918985 25919722 -18987848 - L1ME3 LINE L1 -4284 2360 1649 186 43 0 0 chr21 25919722 25919745 -18987825 + (TC)n Simple_repeat Simple_repeat 2 24 0 4352 258 89 55 chr21 25919745 25920189 -18987381 - L1ME3 LINE L1 -4995 1649 796 36 40 0 0 chr21 25920200 25920250 -18987320 + AT_rich Low_complexity Low_complexity 1 50 0 213 115 0 58 chr21 25920257 25920309 -18987261 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 1194 218 65 141 chr21 25920309 25920774 -18986796 - L1ME3 LINE L1 -5945 597 191 207 0 0 0 chr21 25920774 25920797 -18986773 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1194 218 65 141 chr21 25920797 25920961 -18986609 - L1ME3 LINE L1 -6351 191 16 1727 190 102 11 chr21 25920986 25921350 -18986220 - MSTA LTR MaLR -2 426 30 2376 183 29 2 chr21 25921780 25922234 -18985336 - MER41B LTR ERV1 -38 597 132 25 31 0 0 chr21 25925327 25925359 -18982211 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr21 25925636 25925661 -18981909 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr21 25925733 25925763 -18981807 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr21 25926459 25926504 -18981066 + AT_rich Low_complexity Low_complexity 1 45 0 766 161 11 25 chr21 25926533 25926904 -18980666 + CT-rich Low_complexity Low_complexity 1 365 0 23 0 0 0 chr21 25927293 25927316 -18980254 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr21 25927335 25927367 -18980203 + AT_rich Low_complexity Low_complexity 1 32 0 246 310 95 0 chr21 25927367 25927483 -18980087 - L2 LINE L2 0 3313 3187 21 0 0 0 chr21 25927638 25927659 -18979911 + AT_rich Low_complexity Low_complexity 1 21 0 2945 108 32 0 chr21 25927666 25928109 -18979461 - L1PA11 LINE L1 -1 6173 5717 1748 312 95 28 chr21 25928270 25928661 -18978909 - L2 LINE L2 -2102 1212 848 874 220 108 20 chr21 25928661 25928845 -18978725 - MER33 DNA MER1_type -2261 324 103 239 53 0 26 chr21 25928845 25928883 -18978687 + (TTA)n Simple_repeat Simple_repeat 2 38 0 874 220 108 20 chr21 25928883 25928993 -18978577 - MER33 DNA MER1_type -2482 103 4 1748 312 95 28 chr21 25928993 25929447 -18978123 - L2 LINE L2 -2466 848 311 2582 201 50 31 chr21 25929640 25930281 -18977289 - L1MB7 LINE L1 -10 6174 5522 231 330 36 27 chr21 25930597 25930709 -18976861 - MIR SINE MIR -77 185 73 529 75 75 12 chr21 25931176 25931256 -18976314 + L1PB2 LINE L1 6030 6114 -37 2133 104 0 0 chr21 25931342 25931631 -18975939 + AluSc SINE Alu 1 289 -20 280 277 98 55 chr21 25931703 25932082 -18975488 + L1ME4a LINE L1 5723 6117 -4 1341 108 5 5 chr21 25932737 25932941 -18974629 + L1PB2 LINE L1 5946 6149 -2 1645 142 8 15 chr21 25933948 25934216 -18973354 + AluJb SINE Alu 27 292 -20 315 338 59 89 chr21 25934573 25935389 -18972181 + L2 LINE L2 1542 2332 -982 352 366 128 30 chr21 25935603 25935901 -18971669 + L2 LINE L2 2945 3271 -1 1028 205 9 2 chr21 25936197 25936411 -18971159 + L1M3 LINE L1 5465 5674 -510 628 227 136 6 chr21 25936472 25936648 -18970922 - L1MC4 LINE L1 -948 7094 6896 5458 106 294 1 chr21 25936721 25938514 -18969056 - L1PA8 LINE L1 -108 6064 3670 13785 178 23 7 chr21 25938520 25942055 -18965515 - L1 LINE L1 -1088 6477 2892 2703 6 0 13 chr21 25942376 25942694 -18964876 - L1PA3 LINE L1 0 6155 5842 4896 28 3 4 chr21 25942694 25943471 -18964099 + L1PA3 LINE L1 5077 5852 -303 1776 116 0 27 chr21 25945563 25945821 -18961749 + AluSq SINE Alu 28 278 -35 261 0 0 0 chr21 25945822 25945851 -18961719 + (TC)n Simple_repeat Simple_repeat 2 30 0 280 226 0 32 chr21 25945853 25945946 -18961624 - L1MC4 LINE L1 -1339 6703 6614 208 143 0 0 chr21 25945966 25946001 -18961569 + (TA)n Simple_repeat Simple_repeat 2 36 0 2743 183 8 63 chr21 25946098 25946147 -18961423 - MLT2B3 LTR ERVL 0 554 504 785 30 67 0 chr21 25946147 25946282 -18961288 + (TAGA)n Simple_repeat Simple_repeat 3 146 0 2743 183 8 63 chr21 25946282 25946818 -18960752 - MLT2B3 LTR ERVL -50 504 1 2423 91 0 0 chr21 25947408 25947715 -18959855 - AluSg SINE Alu -3 307 1 32 57 0 0 chr21 25949109 25949162 -18958408 + AT_rich Low_complexity Low_complexity 1 53 0 1365 105 0 21 chr21 25949164 25949354 -18958216 - AluSg/x SINE Alu -25 287 102 371 113 0 0 chr21 25949354 25949407 -18958163 + Alu SINE Alu 243 295 -5 2136 189 43 22 chr21 25949623 25950040 -18957530 + MSTB LTR MaLR 1 426 0 8157 201 19 20 chr21 25950040 25951678 -18955892 + MSTB-int LTR MaLR 1 1636 -15 2216 176 39 10 chr21 25951692 25952102 -18955468 + MSTB LTR MaLR 1 422 -4 211 150 25 0 chr21 25952321 25952361 -18955209 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 311 327 19 6 chr21 25952709 25952865 -18954705 + L1M4c LINE L1 1656 1813 -4571 241 237 52 21 chr21 25952873 25952970 -18954600 + L1M4c LINE L1 2004 2103 -4460 3793 183 29 4 chr21 25952978 25953660 -18953910 - MER50 LTR ERV1 -35 699 1 2496 123 11 8 chr21 25953662 25954050 -18953520 - MER50-int LTR ERV1 -10 7195 4933 * 2753 111 2 10 chr21 25954043 25954456 -18953114 - MER50-int LTR ERV1 -1053 6152 5743 * 6258 178 48 7 chr21 25954454 25955657 -18951913 - MER50-int LTR ERV1 -1636 5569 4317 3093 218 27 38 chr21 25955648 25956341 -18951229 - MER50-int LTR ERV1 -3732 3473 2788 * 6642 155 44 26 chr21 25956337 25958033 -18949537 - MER50-int LTR ERV1 -5355 1850 1 3911 169 23 11 chr21 25958151 25958859 -18948711 - MER50 LTR ERV1 -12 722 7 340 290 92 62 chr21 25958914 25959318 -18948252 + L1M4c LINE L1 2135 2550 -4013 240 295 58 6 chr21 25959384 25959557 -18948013 + L1M4c LINE L1 2457 2638 -3744 232 189 0 19 chr21 25959558 25959611 -18947959 + L1M4c LINE L1 2665 2716 -3666 620 225 199 0 chr21 25959611 25959762 -18947808 + Tigger3(Golem) DNA MER2_type 1 181 -2848 * 2824 163 32 0 chr21 25959761 25960263 -18947307 + Tigger3(Golem) DNA MER2_type 2509 3026 -3 1088 267 104 28 chr21 25960265 25960910 -18946660 + L1M4c LINE L1 2715 3408 -2974 508 253 184 7 chr21 25960917 25961210 -18946360 + L1M4c LINE L1 3451 3795 -2587 201 237 0 0 chr21 25961280 25961339 -18946231 + GA-rich Low_complexity Low_complexity 3 61 0 2014 117 3 3 chr21 25962066 25962380 -18945190 - AluSx SINE Alu 0 314 1 501 148 0 0 chr21 25962771 25962852 -18944718 - AluS SINE Alu -5 304 224 231 349 26 33 chr21 25963260 25963412 -18944158 - L3 LINE CR1 -82 1495 1345 3125 46 5 3 chr21 25963971 25964360 -18943210 + L1PA7 LINE L1 5758 6147 -7 249 320 70 15 chr21 25964747 25964947 -18942623 + L1ME LINE L1 5561 5771 -350 1971 178 21 16 chr21 25965253 25965641 -18941929 + MLT1B LTR MaLR 1 390 0 1634 189 3 31 chr21 25967415 25967732 -18939838 + MER54B LTR ERVL 486 793 0 2371 118 28 8 chr21 25968595 25968952 -18938618 - THE1B LTR MaLR 0 364 1 365 276 11 0 chr21 25968989 25969066 -18938504 + MER8 DNA MER2_type 2 79 -160 298 242 30 0 chr21 25969066 25969132 -18938438 - MER2 DNA MER2_type -1 344 277 2193 185 39 2 chr21 25969356 25969767 -18937803 - MSTB LTR MaLR 0 426 1 2624 162 26 15 chr21 25970422 25970878 -18936692 - MLT1C LTR MaLR 0 467 7 183 156 0 0 chr21 25971187 25971219 -18936351 + T-rich Low_complexity Low_complexity 1 32 0 182 301 38 90 chr21 25971797 25971930 -18935640 + MIR SINE MIR 99 224 -38 6659 157 11 8 chr21 25972038 25974304 -18933266 - L1MA2 LINE L1 0 6304 4030 226 372 37 49 chr21 25974638 25974802 -18932768 + MLT1K LTR MaLR 89 250 -338 4717 186 112 0 chr21 25975365 25976253 -18931317 - LTR28 LTR ERV1 -33 987 1 3139 141 6 4 chr21 25977572 25978068 -18929502 - LOR1a LTR ERV1 0 497 1 303 213 0 0 chr21 25979031 25979106 -18928464 + (TG)n Simple_repeat Simple_repeat 2 76 0 26 0 0 0 chr21 25979223 25979249 -18928321 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr21 25979742 25979767 -18927803 + AT_rich Low_complexity Low_complexity 1 25 0 2036 123 6 25 chr21 25979927 25980244 -18927326 - AluSq SINE Alu 0 313 3 285 250 0 0 chr21 25980739 25980799 -18926771 - LTR33 LTR ERVL -360 161 102 252 0 0 0 chr21 25980811 25980839 -18926731 + (T)n Simple_repeat Simple_repeat 1 28 0 514 252 83 32 chr21 25981233 25981451 -18926119 + L1MC4 LINE L1 7281 7509 -533 5691 116 30 2 chr21 25981496 25982385 -18925185 - L1PA12 LINE L1 -1 6167 5254 819 168 20 0 chr21 25982393 25982542 -18925028 + L1P LINE L1 4788 4939 -1207 711 121 0 0 chr21 25982542 25982641 -18924929 - LTR12 LTR ERV1 -133 581 483 246 243 14 0 chr21 25982644 25982718 -18924852 - LTR30 LTR ERV1 -79 643 569 1495 98 49 114 chr21 25982721 25983100 -18924470 - LTR12 LTR ERV1 -400 2038 57 257 250 0 0 chr21 25983104 25983156 -18924414 - LTR30 LTR ERV1 -670 52 1 1439 192 3 3 chr21 25983156 25983453 -18924117 + L1P LINE L1 4936 5232 -914 183 318 23 34 chr21 25983642 25983730 -18923840 + MIR SINE MIR 149 235 -27 998 168 0 25 chr21 25985548 25985751 -18921819 - L1MA4A LINE L1 -11 6292 6095 5502 217 17 8 chr21 25985768 25987111 -18920459 - L1 LINE L1 -2465 3681 2327 2361 128 13 11 chr21 25987111 25987485 -18920085 + THE1C LTR MaLR 1 375 0 189 231 39 39 chr21 25988114 25988166 -18919404 - L3 LINE CR1 -6 1571 1520 1866 220 6 0 chr21 25988614 25988973 -18918597 + MLT1A1 LTR MaLR 1 361 -4 636 293 33 6 chr21 25989777 25989958 -18917612 - MER5A DNA MER1_type -3 186 1 1326 232 76 116 chr21 25990001 25991003 -18916567 + LTR28 LTR ERV1 1 1020 0 235 183 33 0 chr21 25991014 25991074 -18916496 - LTR37B LTR ERV1 -398 70 9 648 267 135 21 chr21 25991190 25991601 -18915969 + LTR41 LTR ERVL 1 531 -242 1332 88 9 70 chr21 25991622 25991850 -18915720 - L1PA11 LINE L1 0 6174 5961 2901 81 0 3 chr21 25991851 25992233 -18915337 + L1PA11 LINE L1 5582 5962 -212 606 217 51 80 chr21 25992234 25992513 -18915057 + LTR41 LTR ERVL 526 795 0 642 13 0 0 chr21 25992684 25992759 -18914811 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1516 230 116 31 chr21 25992796 25993428 -18914142 + LTR48 LTR ERV1 1 780 -7 303 336 63 7 chr21 25993617 25993760 -18913810 - L1ME4a LINE L1 -2 6119 5969 1156 202 53 13 chr21 25994030 25994390 -18913180 + MSTB1 LTR MaLR 1 432 0 2893 184 132 45 chr21 25994973 25996034 -18911536 + L1MB2 LINE L1 5016 6164 -7 205 418 11 0 chr21 25996072 25996163 -18911407 - MIR3 SINE MIR -35 173 82 258 32 0 0 chr21 25996576 25996607 -18910963 + (CA)n Simple_repeat Simple_repeat 2 32 0 1327 204 20 62 chr21 25996972 25997329 -18910241 - MLT1A1 LTR MaLR -11 354 13 2286 207 78 1 chr21 25998208 25998697 -18908873 - MLT2B3 LTR ERVL -35 500 4 6669 77 10 6 chr21 25998977 26000041 -18907529 - L1PA7 LINE L1 0 6154 5091 5876 79 20 0 chr21 26000041 26000841 -18906729 + L1PA7 LINE L1 4278 5093 -1053 29 59 0 15 chr21 26000846 26000887 -18906683 + AT_rich Low_complexity Low_complexity 1 42 -25 393 108 0 15 chr21 26000887 26000952 -18906618 + L1PA7 LINE L1 6084 6147 -7 29 59 0 15 chr21 26000952 26000978 -18906592 + AT_rich Low_complexity Low_complexity 42 67 0 225 0 0 0 chr21 26001124 26001149 -18906421 + (A)n Simple_repeat Simple_repeat 1 25 0 202 323 57 91 chr21 26001153 26001450 -18906120 - L2 LINE L2 -86 3186 2900 198 103 0 0 chr21 26001591 26001620 -18905950 + (TC)n Simple_repeat Simple_repeat 2 30 0 243 0 0 0 chr21 26003377 26003404 -18904166 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr21 26006431 26006458 -18901112 + AT_rich Low_complexity Low_complexity 1 27 0 306 248 20 40 chr21 26006461 26006562 -18901008 - L1MC4 LINE L1 -1340 6702 6604 415 199 11 33 chr21 26006638 26006819 -18900751 + (TA)n Simple_repeat Simple_repeat 2 178 0 209 222 0 19 chr21 26006830 26006884 -18900686 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2009 175 14 41 chr21 26006884 26007301 -18900269 + Tigger2a DNA MER2_type 26 431 -3 1746 166 58 82 chr21 26007313 26007373 -18900197 - MSTB1 LTR MaLR -13 419 359 2143 111 0 13 chr21 26007373 26007688 -18899882 + AluY SINE Alu 1 311 0 1746 166 58 82 chr21 26007688 26008056 -18899514 - MSTB1 LTR MaLR -73 359 1 15308 181 53 42 chr21 26008095 26010134 -18897436 + L1M1 LINE L1 14 2028 -5537 351 102 0 0 chr21 26010134 26010183 -18897387 + Alu SINE Alu 1 49 -251 15308 181 53 42 chr21 26010183 26010210 -18897360 + L1M1 LINE L1 2028 2053 -5512 2137 141 0 0 chr21 26010210 26010514 -18897056 + AluY SINE Alu 1 304 -7 15308 181 53 42 chr21 26010514 26011413 -18896157 + L1M1 LINE L1 2053 2940 -4625 1905 147 6 13 chr21 26011413 26011727 -18895843 - AluSx SINE Alu 0 312 1 15308 181 53 42 chr21 26011727 26015350 -18892220 + L1M1 LINE L1 2940 6738 -827 235 336 119 7 chr21 26015515 26015658 -18891912 + L2 LINE L2 2737 2895 -419 1806 159 138 5 chr21 26015846 26016224 -18891346 - MSTA LTR MaLR 0 428 1 336 24 0 0 chr21 26016291 26016332 -18891238 + (CA)n Simple_repeat Simple_repeat 2 42 0 207 220 0 20 chr21 26016440 26016490 -18891080 + T-rich Low_complexity Low_complexity 5 53 0 864 319 153 19 chr21 26016556 26017284 -18890286 + L2 LINE L2 2501 3313 0 213 39 0 0 chr21 26017645 26017671 -18889899 + (TG)n Simple_repeat Simple_repeat 1 26 0 1914 209 39 5 chr21 26017872 26018284 -18889286 + MSTB LTR MaLR 1 426 0 223 329 126 34 chr21 26018535 26018742 -18888828 + MIR SINE MIR 25 250 -12 21649 177 26 16 chr21 26018754 26021052 -18886518 + L1PA11 LINE L1 986 3260 -3229 3308 102 4 0 chr21 26021052 26021502 -18886068 - MLT2A2 LTR ERVL 0 453 2 21649 177 26 16 chr21 26021502 26021631 -18885939 + L1PA11 LINE L1 3260 3386 -3103 2114 140 3 0 chr21 26021631 26021939 -18885631 + AluSq SINE Alu 3 311 -2 21649 177 26 16 chr21 26021939 26024951 -18882619 + L1PA11 LINE L1 3386 6482 -7 297 0 0 0 chr21 26024952 26024985 -18882585 + (TA)n Simple_repeat Simple_repeat 2 34 0 30 69 0 0 chr21 26026586 26026644 -18880926 + AT_rich Low_complexity Low_complexity 1 58 0 215 310 221 18 chr21 26026645 26026758 -18880812 + MER5B DNA MER1_type 43 178 0 301 336 80 22 chr21 26027693 26027830 -18879740 - L2 LINE L2 0 3313 3169 2073 115 10 3 chr21 26027985 26028304 -18879266 + AluSx SINE Alu 1 312 0 297 326 110 8 chr21 26028335 26028599 -18878971 - L2 LINE L2 -403 2911 2621 477 0 0 0 chr21 26028621 26028674 -18878896 + (TG)n Simple_repeat Simple_repeat 1 53 0 629 261 38 62 chr21 26028704 26029045 -18878525 - L1ME3A LINE L1 -17 6153 5821 331 288 107 25 chr21 26029076 26029357 -18878213 - L1ME3A LINE L1 -1816 4330 4027 2387 85 3 0 chr21 26029374 26029680 -18877890 - AluSg SINE Alu -1 309 3 1263 162 101 58 chr21 26029693 26029971 -18877599 - AluJo SINE Alu -22 290 1 203 306 42 0 chr21 26030303 26030375 -18877195 + MER91C DNA MER1_type 14 88 -52 1744 170 27 24 chr21 26031489 26031865 -18875705 + L1MC3 LINE L1 7408 7784 -1 1994 141 7 3 chr21 26032155 26032452 -18875118 - AluSx SINE Alu -14 298 1 487 329 51 40 chr21 26032601 26032907 -18874663 + HERV16 LTR ERVL 2845 3157 -1905 232 167 17 17 chr21 26033832 26033892 -18873678 - L1MA8 LINE L1 -6 6285 6226 737 231 122 66 chr21 26033897 26034490 -18873080 - LTR50 LTR ERVL -42 753 34 24 32 0 0 chr21 26034920 26034951 -18872619 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr21 26035373 26035408 -18872162 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 833 181 51 6 chr21 26035409 26035586 -18871984 - L1MB2 LINE L1 -7 6164 5980 269 314 23 69 chr21 26035755 26035930 -18871640 - LTR67 LTR ERVL -57 500 334 252 100 0 0 chr21 26036138 26036178 -18871392 + (TG)n Simple_repeat Simple_repeat 2 41 0 378 64 0 0 chr21 26036709 26036756 -18870814 - MLT2D LTR ERVL 0 414 368 567 135 0 0 chr21 26036778 26036874 -18870696 + (GA)n Simple_repeat Simple_repeat 1 96 0 1092 238 30 22 chr21 26036880 26037195 -18870375 - MLT2D LTR ERVL -53 344 3 1729 216 28 20 chr21 26038398 26038792 -18868778 + MLT2C1 LTR ERVL 1 397 0 299 344 8 8 chr21 26039012 26039134 -18868436 - MLT1H LTR MaLR -302 247 126 201 226 113 0 chr21 26039307 26039369 -18868201 + MIR SINE MIR 137 205 -57 2151 116 0 0 chr21 26039553 26039846 -18867724 + AluSg SINE Alu 1 293 -17 1365 202 174 22 chr21 26040144 26040547 -18867023 + MER31B LTR ERV1 1 541 -2 937 230 48 9 chr21 26041520 26041750 -18865820 + L1MD2 LINE L1 5804 6042 -317 827 209 165 20 chr21 26041761 26041828 -18865742 + L1MD2 LINE L1 6068 6124 -235 351 0 0 0 chr21 26041828 26041867 -18865703 + (CA)n Simple_repeat Simple_repeat 2 40 0 827 209 165 20 chr21 26041867 26042053 -18865517 + L1MD2 LINE L1 6124 6358 -1 2493 68 0 0 chr21 26042059 26042355 -18865215 + AluY SINE Alu 1 296 -15 244 282 24 12 chr21 26042392 26042477 -18865093 + L3 LINE CR1 611 696 -881 180 77 0 0 chr21 26042867 26042893 -18864677 + (CATG)n Simple_repeat Simple_repeat 1 26 0 199 327 93 37 chr21 26043053 26043160 -18864410 + L3 LINE CR1 1041 1153 -424 2458 127 0 19 chr21 26043296 26043666 -18863904 - THE1B LTR MaLR 0 364 2 748 275 10 5 chr21 26043678 26043885 -18863685 - MER58A DNA MER1_type -15 209 2 299 228 130 0 chr21 26044208 26044300 -18863270 - MER5A DNA MER1_type -76 113 10 181 229 257 0 chr21 26044746 26044816 -18862754 - MIR SINE MIR -120 142 55 861 120 0 0 chr21 26045642 26045650 -18861920 + (CA)n Simple_repeat Simple_repeat 1 141 0 861 120 0 0 chr21 26045650 26045783 -18861787 + (CA)n Simple_repeat Simple_repeat 2 134 0 433 176 54 0 chr21 26046399 26046473 -18861097 - MER2 DNA MER2_type -1 344 267 1113 182 5 5 chr21 26046571 26046769 -18860801 - AluJb SINE Alu -31 281 84 451 229 12 0 chr21 26046769 26046852 -18860718 - MER2 DNA MER2_type -260 85 2 284 331 14 29 chr21 26046854 26046993 -18860577 + (CATATA)n Simple_repeat Simple_repeat 2 138 0 313 153 0 17 chr21 26047228 26047287 -18860283 + LTR49-int LTR ERV1 3946 4003 -2328 486 304 208 5 chr21 26048243 26048450 -18859120 + MIR SINE MIR 12 260 -2 1332 89 0 0 chr21 26048952 26049120 -18858450 + AluY SINE Alu 131 298 -13 35 0 0 0 chr21 26049120 26049155 -18858415 + AT_rich Low_complexity Low_complexity 1 35 0 453 268 135 20 chr21 26050524 26050703 -18856867 + MIR SINE MIR 21 208 -54 2091 55 44 7 chr21 26051336 26051660 -18855910 - AluY SINE Alu 0 334 1 505 189 0 0 chr21 26052033 26052128 -18855442 - L1PA16 LINE L1 -2112 4034 3940 * 5127 193 23 7 chr21 26052123 26054217 -18853353 + L1PA16 LINE L1 4040 6166 0 189 344 11 0 chr21 26054706 26054796 -18852774 + MIR SINE MIR 138 228 -34 198 0 0 0 chr21 26054997 26055019 -18852551 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1830 180 65 43 chr21 26055154 26055531 -18852039 + MSTA LTR MaLR 1 389 -39 2128 107 27 13 chr21 26055531 26055831 -18851739 - AluSg SINE Alu -6 304 1 1830 180 65 43 chr21 26055831 26055869 -18851701 + MSTA LTR MaLR 389 425 -3 2045 126 37 0 chr21 26056141 26056435 -18851135 + AluSq SINE Alu 1 305 -8 29 28 0 0 chr21 26056950 26056986 -18850584 + AT_rich Low_complexity Low_complexity 1 36 0 277 179 64 51 chr21 26057407 26057485 -18850085 + MER5A DNA MER1_type 86 164 -25 203 286 114 14 chr21 26057437 26057507 -18850063 - MER5A DNA MER1_type -106 83 7 * 2076 68 93 0 chr21 26057614 26057894 -18849676 - AluY SINE Alu -5 306 1 2463 72 0 3 chr21 26057894 26058198 -18849372 - AluY SINE Alu -8 303 1 279 0 0 0 chr21 26058420 26058451 -18849119 + (TG)n Simple_repeat Simple_repeat 2 32 0 2333 99 0 6 chr21 26058678 26058990 -18848580 - AluSq SINE Alu -3 310 1 391 298 58 53 chr21 26059096 26059304 -18848266 + MER63A DNA MER1_type 2 210 0 248 270 68 0 chr21 26059967 26060041 -18847529 - MIR SINE MIR -118 144 66 2345 78 0 0 chr21 26060079 26060375 -18847195 + AluY SINE Alu 1 296 -15 1956 161 27 21 chr21 26060735 26061108 -18846462 - THE1C LTR MaLR 0 375 1 1452 254 154 6 chr21 26061191 26061672 -18845898 - MLT1E1 LTR MaLR -1 653 102 5432 148 24 2 chr21 26062033 26063012 -18844558 - L1PA15 LINE L1 -7 6158 5162 5402 163 17 17 chr21 26065326 26066436 -18841134 - L1MA4 LINE L1 -1 6299 5188 1974 229 52 9 chr21 26066448 26067130 -18840440 - L1MA4 LINE L1 -1079 5067 4316 203 0 0 36 chr21 26067422 26067450 -18840120 + (TTAAA)n Simple_repeat Simple_repeat 3 29 0 1749 125 0 46 chr21 26068012 26068292 -18839278 + AluSg SINE Alu 35 301 -9 2259 80 6 52 chr21 26068657 26068982 -18838588 + AluSg SINE Alu 1 310 0 35 0 0 0 chr21 26069711 26069746 -18837824 + AT_rich Low_complexity Low_complexity 1 35 0 222 379 53 0 chr21 26072647 26072742 -18834828 - MER5B DNA MER1_type -1 177 78 2797 84 8 0 chr21 26072972 26073354 -18834216 - L1PA7 LINE L1 -7 6147 5763 24 32 0 0 chr21 26073434 26073465 -18834105 + AT_rich Low_complexity Low_complexity 1 31 0 829 247 146 15 chr21 26073594 26073999 -18833571 + LTR37B LTR ERV1 9 466 -2 22 70 0 0 chr21 26074178 26074221 -18833349 + AT_rich Low_complexity Low_complexity 1 43 0 2050 79 8 0 chr21 26074589 26074872 -18832698 - AluY SINE Alu 0 319 35 21 0 0 0 chr21 26075101 26075122 -18832448 + AT_rich Low_complexity Low_complexity 1 21 0 397 313 147 12 chr21 26075307 26075470 -18832100 - MER5A DNA MER1_type -2 187 3 1939 233 40 71 chr21 26075623 26076245 -18831325 + MER77 LTR ERV1 1 603 -2 927 274 67 22 chr21 26077386 26078060 -18829510 - L1MEc LINE L1 -3483 2732 2047 3263 244 46 31 chr21 26078060 26078994 -18828576 + Tigger6a DNA MER2_type 2 955 -642 1651 197 10 3 chr21 26078994 26079298 -18828272 - AluJb SINE Alu -6 306 1 3263 244 46 31 chr21 26079298 26079429 -18828141 + Tigger6a DNA MER2_type 955 1083 0 927 274 67 22 chr21 26079429 26079507 -18828063 - L1MEc LINE L1 -4168 2047 1974 239 158 0 0 chr21 26079507 26079545 -18828025 + L1PA16 LINE L1 3636 3673 -2473 5352 166 5 24 chr21 26079555 26080736 -18826834 + L1PA16 LINE L1 5007 6165 -1 2380 100 0 0 chr21 26080916 26081226 -18826344 - AluSg SINE Alu 0 310 1 250 54 27 0 chr21 26081270 26081307 -18826263 - L1P LINE L1 -1219 4927 4890 3484 31 0 0 chr21 26081307 26081720 -18825850 + L1PA4 LINE L1 5740 6152 -3 325 318 61 46 chr21 26081746 26082207 -18825363 - L1MEc LINE L1 -4677 1719 1079 1203 328 53 18 chr21 26082219 26082957 -18824613 - L1MEc LINE L1 -5483 913 150 241 315 28 42 chr21 26083074 26083217 -18824353 - HAL1b LINE L1 -963 385 245 1402 197 23 75 chr21 26084953 26085338 -18822232 - MLT1A1 LTR MaLR 0 365 1 2083 126 61 3 chr21 26085472 26085814 -18821756 + THE1B LTR MaLR 1 362 -2 1581 94 3 206 chr21 26086052 26086425 -18821145 - AluSg SINE Alu -3 297 1 328 331 29 43 chr21 26086529 26086668 -18820902 + MER5A DNA MER1_type 52 188 -1 1303 51 0 0 chr21 26087470 26087626 -18819944 - AluY SINE Alu 0 311 156 261 0 0 0 chr21 26088760 26088789 -18818781 + (T)n Simple_repeat Simple_repeat 1 29 0 302 246 115 54 chr21 26089828 26089958 -18817612 + MIR SINE MIR 3 140 -122 2423 73 0 10 chr21 26090494 26090797 -18816773 + AluY SINE Alu 3 302 -9 202 337 45 22 chr21 26090925 26091014 -18816556 + MIR SINE MIR 157 247 -15 317 321 46 0 chr21 26091224 26091333 -18816237 + MIR SINE MIR 8 121 -141 2119 57 0 36 chr21 26092950 26093230 -18814340 - AluY SINE Alu -4 307 38 1190 235 90 59 chr21 26093863 26094306 -18813264 - MLT1C LTR MaLR -5 462 6 2058 190 8 2 chr21 26094719 26095119 -18812451 + L1PA16 LINE L1 5764 6165 -1 286 151 68 27 chr21 26095125 26095198 -18812372 + L1ME4a LINE L1 5968 6043 -78 201 147 0 0 chr21 26097414 26097448 -18810122 + (CA)n Simple_repeat Simple_repeat 1 34 0 4953 95 26 0 chr21 26097725 26098232 -18809338 - L1PA13 LINE L1 -2 6161 5628 2621 102 0 24 chr21 26098232 26098605 -18808965 + THE1B LTR MaLR 1 364 0 4953 95 26 0 chr21 26098605 26098826 -18808744 - L1PA13 LINE L1 -535 5628 5414 2398 199 25 14 chr21 26099206 26099884 -18807686 - L1M4 LINE L1 -405 6277 5594 732 247 30 30 chr21 26099905 26100172 -18807398 - L1M4 LINE L1 -2191 4453 4187 * 5051 185 25 16 chr21 26100165 26101706 -18805864 - L1PA16 LINE L1 -5 6864 5317 9747 112 18 31 chr21 26101721 26103186 -18804384 + THE1B-int LTR MaLR 133 1579 -1 2375 112 14 25 chr21 26103186 26103552 -18804018 + THE1B LTR MaLR 3 364 0 6552 214 18 14 chr21 26103553 26105035 -18802535 - L1PA16 LINE L1 -5592 1257 5 639 206 103 0 chr21 26105050 26105205 -18802365 - L1M4 LINE L1 -2448 4196 4026 5059 251 67 36 chr21 26105260 26108120 -18799450 - L1M4 LINE L1 -3653 2991 2 334 333 26 0 chr21 26109201 26109315 -18798255 + L2 LINE L2 3192 3308 -5 23 33 0 0 chr21 26109432 26109462 -18798108 + AT_rich Low_complexity Low_complexity 1 30 0 269 370 0 24 chr21 26109517 26109644 -18797926 - MIR SINE MIR -110 152 29 336 326 123 42 chr21 26109776 26110254 -18797316 - MLT1F LTR MaLR -8 534 18 209 235 191 61 chr21 26110327 26110442 -18797128 + MIR SINE MIR 46 175 -87 819 272 113 25 chr21 26111252 26111572 -18795998 - L2 LINE L2 -1646 1668 1321 652 306 46 18 chr21 26111667 26111948 -18795622 + MLT1K LTR MaLR 300 588 0 384 321 48 36 chr21 26112010 26112178 -18795392 + MIR SINE MIR 1 170 -92 * 389 295 54 30 chr21 26112174 26112340 -18795230 - MIR SINE MIR -30 232 63 313 266 22 79 chr21 26112362 26112501 -18795069 - MER94 DNA DNA 0 134 4 1131 289 99 19 chr21 26112501 26112917 -18794653 - LTR16A LTR ERVL -1 449 1 2407 77 0 0 chr21 26112991 26113291 -18794279 - AluY SINE Alu -11 300 1 21 36 0 0 chr21 26113447 26113475 -18794095 + AT_rich Low_complexity Low_complexity 1 28 0 2573 183 55 6 chr21 26114095 26114587 -18792983 + MLT2B1 LTR ERVL 1 516 -4 24 0 0 0 chr21 26115666 26115690 -18791880 + AT_rich Low_complexity Low_complexity 1 24 0 3700 125 77 34 chr21 26115769 26116573 -18790997 - LTR12 LTR ERV1 -24 690 1 648 230 38 47 chr21 26116785 26117020 -18790550 - pTR5 LTR ERV1 -1463 975 743 2221 71 0 46 chr21 26117069 26117392 -18790178 + AluY SINE Alu 1 308 -3 26 30 0 0 chr21 26118260 26118293 -18789277 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr21 26118674 26118700 -18788870 + AT_rich Low_complexity Low_complexity 1 26 0 192 77 0 0 chr21 26119698 26119724 -18787846 + (T)n Simple_repeat Simple_repeat 1 26 0 284 228 20 129 chr21 26119763 26119864 -18787706 + MER77 LTR ERV1 1 90 -515 2599 188 93 30 chr21 26120677 26121342 -18786228 + MER39 LTR ERV1 1 707 0 354 352 50 6 chr21 26121576 26121735 -18785835 - L2 LINE L2 -329 2984 2819 481 250 0 9 chr21 26121858 26121974 -18785596 + MER58A DNA MER1_type 1 115 0 * 509 169 0 0 chr21 26121974 26122046 -18785524 + MER58A DNA MER1_type 152 223 -1 1543 188 23 10 chr21 26122404 26122708 -18784862 - AluJb SINE Alu -4 308 1 33 43 0 0 chr21 26123349 26123396 -18784174 + AT_rich Low_complexity Low_complexity 1 47 0 180 0 0 0 chr21 26125603 26125623 -18781947 + (TG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr21 26126077 26126099 -18781471 + AT_rich Low_complexity Low_complexity 1 22 0 1017 273 51 14 chr21 26126118 26126547 -18781023 + L1MB4 LINE L1 3289 3733 -2413 * 2939 239 65 11 chr21 26126544 26127465 -18780105 + L1MB4 LINE L1 4358 5384 -796 2118 104 0 0 chr21 26127465 26127745 -18779825 + AluSq SINE Alu 3 282 -31 2939 239 65 11 chr21 26127745 26128397 -18779173 + L1MB4 LINE L1 5384 6000 -180 571 244 58 12 chr21 26128405 26128577 -18778993 + L1M4 LINE L1 4686 4865 -1281 537 265 54 0 chr21 26128597 26128763 -18778807 + L1MB4 LINE L1 6006 6180 0 9497 197 43 31 chr21 26128876 26130914 -18776656 + L1MA4 LINE L1 2131 4788 -1512 2032 108 18 4 chr21 26130914 26131215 -18776355 + AluSg SINE Alu 1 305 0 9497 197 43 31 chr21 26131215 26132005 -18775565 + L1MA4 LINE L1 4788 5567 -733 653 221 7 13 chr21 26132040 26132194 -18775376 - L1M4 LINE L1 -6384 158 6 2551 202 4 16 chr21 26132335 26132851 -18774719 + L1MA4 LINE L1 5620 6129 -171 5905 239 76 27 chr21 26132865 26135091 -18772479 + L1M4 LINE L1 2467 4800 -1346 222 358 58 17 chr21 26135448 26135568 -18772002 + L2 LINE L2 3142 3266 -6 1038 64 41 6 chr21 26135641 26135679 -18771891 + (GAAA)n Simple_repeat Simple_repeat 1 217 0 1038 64 41 6 chr21 26135679 26135851 -18771719 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2454 153 20 2 chr21 26135959 26136357 -18771213 + MSTA-int LTR MaLR 1247 1651 0 2074 145 89 8 chr21 26136382 26136754 -18770816 + MSTA LTR MaLR 27 428 0 24 53 0 0 chr21 26136852 26136890 -18770680 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr21 26137004 26137035 -18770535 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr21 26137366 26137401 -18770169 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 26137799 26137821 -18769749 + AT_rich Low_complexity Low_complexity 1 22 0 2206 50 82 3 chr21 26138873 26139155 -18768415 + AluY SINE Alu 1 304 -7 21 82 0 0 chr21 26139181 26139230 -18768340 + AT_rich Low_complexity Low_complexity 1 49 0 4034 190 34 32 chr21 26139281 26140856 -18766714 - L1MB1 LINE L1 -45 6123 4545 2151 104 0 3 chr21 26141426 26141713 -18765857 - AluSq SINE Alu -27 286 1 240 184 0 0 chr21 26141835 26141884 -18765686 + (CA)n Simple_repeat Simple_repeat 1 49 0 548 252 47 65 chr21 26141884 26142098 -18765472 - MIR SINE MIR -17 245 36 792 259 66 0 chr21 26142229 26142441 -18765129 - MER46A DNA MER2_type -10 226 1 2019 160 0 0 chr21 26142683 26142995 -18764575 + AluSx SINE Alu 1 312 0 2193 149 126 5 chr21 26144354 26144797 -18762773 - L1MA4 LINE L1 -3 6297 5801 * 2291 146 32 2 chr21 26144794 26145019 -18762551 + L1M1 LINE L1 5367 5584 -716 240 35 0 0 chr21 26145019 26145048 -18762522 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1972 138 7 0 chr21 26145051 26145341 -18762229 + AluSx SINE Alu 21 312 0 2291 146 32 2 chr21 26145341 26145522 -18762048 + L1M1 LINE L1 5585 5789 -511 1129 232 61 3 chr21 26145571 26145864 -18761706 - L1MC3 LINE L1 -23 7762 7453 417 41 0 0 chr21 26145864 26145913 -18761657 + THE1A LTR MaLR 1 49 -306 10373 101 15 48 chr21 26145913 26147532 -18760038 + THE1A-int LTR MaLR 14 1580 0 2445 107 6 3 chr21 26147532 26147886 -18759684 + THE1A LTR MaLR 1 355 0 832 217 27 5 chr21 26147886 26148070 -18759500 - L1MC3 LINE L1 -328 7457 7270 557 192 115 0 chr21 26148075 26148205 -18759365 - L1MA9 LINE L1 -38 6274 6130 * 6799 220 75 46 chr21 26148201 26150614 -18756956 - L1MC3 LINE L1 -508 7277 4773 189 0 0 0 chr21 26150614 26150635 -18756935 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6799 220 75 46 chr21 26150635 26150865 -18756705 - L1MC3 LINE L1 -3012 4773 4551 1393 272 35 14 chr21 26150884 26151435 -18756135 - L1MC3 LINE L1 -1772 4374 3813 2795 13 0 0 chr21 26151844 26152152 -18755418 + AluYa5 SINE Alu 1 308 -3 1829 173 30 19 chr21 26152238 26152609 -18754961 + THE1C LTR MaLR 1 375 0 512 222 48 41 chr21 26152746 26152956 -18754614 + MER58 DNA MER1_type 1 2418 -2 1104 155 31 0 chr21 26153216 26153409 -18754161 - L1PB1 LINE L1 -1 6150 5952 12645 194 14 9 chr21 26153412 26156887 -18750683 - L1PB1 LINE L1 -244 5907 2420 1339 61 0 0 chr21 26156902 26157065 -18750505 - AluY SINE Alu -13 298 136 626 133 9 19 chr21 26157065 26157170 -18750400 + LTR1B LTR ERV1 723 826 0 413 216 111 0 chr21 26157170 26157293 -18750277 + MER67B LTR ERV1 60 156 -358 3820 158 82 11 chr21 26157292 26157986 -18749584 - LTR1B LTR ERV1 -83 743 1 318 225 217 23 chr21 26157989 26158118 -18749452 - MER67B LTR ERV1 -507 154 1 2168 107 16 7 chr21 26158516 26158824 -18748746 - AluY SINE Alu 0 311 1 2079 147 0 0 chr21 26159179 26159491 -18748079 + AluSx SINE Alu 1 312 0 554 326 68 40 chr21 26161582 26161981 -18745589 - LTR33 LTR ERVL -111 410 1 2027 171 40 31 chr21 26162204 26162749 -18744821 + MLT2A2 LTR ERVL 1 551 -3 500 264 108 46 chr21 26162752 26163206 -18744364 - HAL1b LINE L1 -105 1243 762 693 242 73 43 chr21 26163316 26163643 -18743927 - HAL1b LINE L1 -779 569 233 2557 56 0 0 chr21 26163792 26164097 -18743473 + AluY SINE Alu 1 305 -6 249 392 78 16 chr21 26164287 26164542 -18743028 + L3 LINE CR1 327 597 -980 603 362 138 25 chr21 26164742 26165487 -18742083 + L3 LINE CR1 652 1480 -97 290 367 113 0 chr21 26165622 26165772 -18741798 + MIR SINE MIR 39 205 -57 329 127 0 36 chr21 26166246 26166301 -18741269 + MER39 LTR ERV1 655 707 0 212 68 0 114 chr21 26166482 26166526 -18741044 + (TC)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr21 26166526 26166549 -18741021 + (CA)n Simple_repeat Simple_repeat 1 23 0 359 297 128 27 chr21 26166574 26166793 -18740777 - HAL1 LINE L1 0 2507 2267 291 288 8 56 chr21 26166841 26166966 -18740604 + L2 LINE L2 3195 3313 0 839 254 4 50 chr21 26166981 26167261 -18740309 - HAL1 LINE L1 -713 1794 1528 771 314 75 10 chr21 26167260 26167779 -18739791 - HAL1 LINE L1 -869 1638 1086 * 363 276 119 11 chr21 26167815 26168083 -18739487 - HAL1 LINE L1 -1240 1267 971 2276 71 0 4 chr21 26169092 26169403 -18738167 + AluY SINE Alu 1 310 0 1080 273 64 58 chr21 26169446 26169929 -18737641 + MLT1E2 LTR MaLR 1 486 -140 304 186 29 0 chr21 26169928 26169998 -18737572 + MLT1D LTR MaLR 432 503 -2 * 2189 131 0 0 chr21 26170002 26170315 -18737255 + AluSq SINE Alu 1 313 0 396 40 0 0 chr21 26171824 26171874 -18735696 + (TG)n Simple_repeat Simple_repeat 1 50 0 24 85 0 0 chr21 26173336 26173395 -18734175 + AT_rich Low_complexity Low_complexity 1 59 0 189 0 0 0 chr21 26174447 26174468 -18733102 + (ATG)n Simple_repeat Simple_repeat 2 22 0 1863 135 7 11 chr21 26174487 26174768 -18732802 - AluSx SINE Alu -32 280 1 835 142 0 0 chr21 26174793 26174920 -18732650 - AluSg/x SINE Alu -5 307 181 324 268 0 0 chr21 26175271 26175353 -18732217 - L1MEc LINE L1 -3552 3389 3308 22 0 0 0 chr21 26175354 26175376 -18732194 + AT_rich Low_complexity Low_complexity 1 22 0 2317 99 6 6 chr21 26175377 26175722 -18731848 - L1PB1 LINE L1 -3 6148 5804 3678 173 65 9 chr21 26175788 26176522 -18731048 - L1MB3 LINE L1 -8 6175 5401 1864 234 26 28 chr21 26176527 26176872 -18730698 + L1 LINE L1 4806 5150 -996 2068 94 17 34 chr21 26176872 26177169 -18730401 - AluSc SINE Alu -12 297 6 2001 154 0 7 chr21 26177174 26177472 -18730098 - AluSx SINE Alu -16 296 1 1864 234 26 28 chr21 26177472 26177688 -18729882 + L1 LINE L1 5154 5372 -774 840 254 33 49 chr21 26177689 26178003 -18729567 - L1MEc LINE L1 -3649 3292 3027 2490 54 7 0 chr21 26178003 26178301 -18729269 - AluY SINE Alu -11 300 1 840 254 33 49 chr21 26178301 26178466 -18729104 - L1MEc LINE L1 -3914 3027 2861 1805 284 95 72 chr21 26178467 26179615 -18727955 - L1MEc LINE L1 -5231 1192 19 186 43 0 0 chr21 26179968 26179991 -18727579 + (T)n Simple_repeat Simple_repeat 1 23 0 2421 70 0 0 chr21 26180024 26180323 -18727247 + AluY SINE Alu 2 300 -11 2387 175 47 10 chr21 26180400 26180885 -18726685 - LTR22 LTR ERVK -4 505 3 222 227 109 36 chr21 26181347 26181457 -18726113 - MIR SINE MIR -56 206 89 245 271 181 8 chr21 26182386 26182519 -18725051 + MIR SINE MIR 51 206 -56 2391 84 0 0 chr21 26182713 26183012 -18724558 - AluY SINE Alu -12 299 1 21 0 0 0 chr21 26183032 26183053 -18724517 + AT_rich Low_complexity Low_complexity 1 21 0 200 269 65 108 chr21 26183110 26183203 -18724367 - L3 LINE CR1 -50 1527 1439 28 0 0 0 chr21 26183215 26183243 -18724327 + AT_rich Low_complexity Low_complexity 1 28 0 531 291 82 20 chr21 26183712 26183956 -18723614 - L3 LINE CR1 -411 1166 908 22 56 0 0 chr21 26184382 26184418 -18723152 + AT_rich Low_complexity Low_complexity 1 36 0 287 194 16 54 chr21 26184428 26184557 -18723013 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 256 193 0 0 chr21 26185130 26185187 -18722383 + A-rich Low_complexity Low_complexity 3 59 0 29 47 0 0 chr21 26185191 26185234 -18722336 + AT_rich Low_complexity Low_complexity 1 43 0 321 339 52 0 chr21 26185261 26185376 -18722194 - L1ME LINE L1 -489 5632 5512 1347 191 56 0 chr21 26185609 26185861 -18721709 + AluJo SINE Alu 32 297 -15 279 239 84 0 chr21 26187182 26187253 -18720317 - MER94 DNA DNA -5 129 53 24 0 0 0 chr21 26188875 26188899 -18718671 + AT_rich Low_complexity Low_complexity 1 24 0 239 266 113 8 chr21 26188950 26189074 -18718496 + L1MC5 LINE L1 7723 7859 -102 234 258 78 31 chr21 26189113 26189241 -18718329 + L1ME LINE L1 4625 4758 -1388 203 265 0 0 chr21 26189244 26189293 -18718277 - L2 LINE L2 0 3313 3265 459 275 157 35 chr21 26189312 26189512 -18718058 + L1ME LINE L1 4752 4926 -1220 330 26 0 0 chr21 26189512 26189551 -18718019 + (CA)n Simple_repeat Simple_repeat 2 40 0 459 275 157 35 chr21 26189551 26189866 -18717704 + L1ME LINE L1 4926 5330 -816 359 278 29 20 chr21 26189922 26190084 -18717486 + L1ME LINE L1 5512 5677 -525 5161 129 4 37 chr21 26190173 26191420 -18716150 - L1PA14 LINE L1 -1 6160 4924 4850 65 14 4 chr21 26191427 26192447 -18715123 + MER11A LTR ERVK 1 1266 0 6960 189 6 53 chr21 26192448 26193098 -18714472 - L1PA14 LINE L1 -1225 4921 4242 1835 186 3 0 chr21 26193098 26193409 -18714161 - AluJb SINE Alu 0 312 1 6960 189 6 53 chr21 26193409 26193890 -18713680 - L1PA14 LINE L1 -1904 4242 3884 2103 124 3 3 chr21 26193890 26194197 -18713373 - AluSc SINE Alu -2 307 1 6960 189 6 53 chr21 26194197 26194652 -18712918 - L1PA14 LINE L1 -2262 3884 3409 403 292 60 48 chr21 26194674 26194990 -18712580 - MLT1H1 LTR MaLR -204 351 63 2451 84 0 0 chr21 26195009 26195307 -18712263 - AluY SINE Alu -13 298 1 273 246 150 54 chr21 26195333 26195500 -18712070 + L1ME LINE L1 5692 5874 -288 4045 167 31 42 chr21 26195522 26196330 -18711240 - L1MA8 LINE L1 -172 6119 5322 2035 131 3 0 chr21 26196330 26196654 -18710916 - AluSp SINE Alu 0 325 1 4045 167 31 42 chr21 26196654 26196861 -18710709 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr21 26197404 26197460 -18710110 + AT_rich Low_complexity Low_complexity 1 56 0 267 31 0 0 chr21 26197945 26197977 -18709593 + (CA)n Simple_repeat Simple_repeat 1 32 0 183 129 0 0 chr21 26198568 26198599 -18708971 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2002 204 13 13 chr21 26198720 26199116 -18708454 - MSTD LTR MaLR 0 396 1 313 266 0 86 chr21 26199234 26199362 -18708208 + MER5B DNA MER1_type 19 135 -43 289 350 68 39 chr21 26199627 26199833 -18707737 - MIR SINE MIR -3 259 48 2402 57 0 0 chr21 26200934 26201216 -18706354 + AluY SINE Alu 1 282 -29 482 15 15 15 chr21 26201216 26201283 -18706287 + (TAAA)n Simple_repeat Simple_repeat 2 132 0 191 333 0 0 chr21 26201736 26201790 -18705780 - MIR SINE MIR -6 256 203 2399 57 3 3 chr21 26202054 26202353 -18705217 - AluY SINE Alu -12 299 1 433 306 88 0 chr21 26202615 26202775 -18704795 + MIR SINE MIR 86 259 -3 24 53 0 0 chr21 26203034 26203072 -18704498 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr21 26203272 26203300 -18704270 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 26203475 26203496 -18704074 + AT_rich Low_complexity Low_complexity 1 21 0 6036 98 22 16 chr21 26203656 26204501 -18703069 - L1PA10 LINE L1 -1 6167 5328 2226 106 0 0 chr21 26204501 26204794 -18702776 - AluSg1 SINE Alu -16 293 1 6036 98 22 16 chr21 26204794 26205637 -18701933 - L1PA10 LINE L1 -840 5328 4472 240 59 0 0 chr21 26205950 26205984 -18701586 + (GA)n Simple_repeat Simple_repeat 1 34 0 2372 141 6 0 chr21 26206155 26206517 -18701053 + THE1B LTR MaLR 1 364 0 1489 211 28 89 chr21 26206880 26207316 -18700254 + MLT2D LTR ERVL 1 409 -5 207 0 0 0 chr21 26208643 26208666 -18698904 + (CA)n Simple_repeat Simple_repeat 2 24 0 1749 112 4 0 chr21 26209202 26209444 -18698126 - AluSx SINE Alu -10 302 60 3191 76 5 2 chr21 26209444 26209879 -18697691 - L1PA8 LINE L1 -3 6169 5734 1735 134 7 34 chr21 26210264 26210556 -18697014 - AluSx SINE Alu -18 294 11 26 0 0 0 chr21 26210765 26210791 -18696779 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr21 26211625 26211666 -18695904 + AT_rich Low_complexity Low_complexity 1 41 0 2260 99 3 0 chr21 26211801 26212094 -18695476 + AluSq SINE Alu 6 299 -14 596 314 49 15 chr21 26212302 26212566 -18695004 - LTR16A1 LTR ERVL -12 445 173 231 221 0 29 chr21 26212787 26212855 -18694715 + (CCA)n Simple_repeat Simple_repeat 2 67 0 21 0 0 0 chr21 26213321 26213342 -18694228 + AT_rich Low_complexity Low_complexity 1 21 0 256 258 0 0 chr21 26213360 26213422 -18694148 - MIR SINE MIR -14 248 187 2059 148 0 0 chr21 26214381 26214701 -18692869 + AluSx SINE Alu 1 320 0 25 0 0 0 chr21 26215340 26215365 -18692205 + AT_rich Low_complexity Low_complexity 1 25 0 238 289 72 21 chr21 26215566 26215663 -18691907 - MIR SINE MIR -102 160 59 216 67 0 0 chr21 26215779 26215809 -18691761 + (CA)n Simple_repeat Simple_repeat 1 30 0 647 280 39 14 chr21 26216637 26216916 -18690654 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr21 26217113 26217154 -18690416 + AT_rich Low_complexity Low_complexity 1 41 0 231 297 0 0 chr21 26217573 26217637 -18689933 - L1ME LINE L1 -579 5542 5479 36 70 0 0 chr21 26217637 26217708 -18689862 + AT_rich Low_complexity Low_complexity 1 71 0 192 125 0 0 chr21 26217825 26217857 -18689713 + (GA)n Simple_repeat Simple_repeat 2 33 0 204 200 0 0 chr21 26218520 26218555 -18689015 + (TG)n Simple_repeat Simple_repeat 2 36 0 27 29 0 0 chr21 26218587 26218621 -18688949 + AT_rich Low_complexity Low_complexity 1 34 0 2072 112 35 0 chr21 26218631 26218918 -18688652 - AluSp SINE Alu -16 297 1 870 256 90 14 chr21 26218930 26219286 -18688284 + Charlie2 DNA MER1_type 2439 2821 -41 468 336 84 30 chr21 26219751 26220177 -18687393 - L2 LINE L2 -624 2690 2242 183 42 0 0 chr21 26220515 26220539 -18687031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4903 175 64 18 chr21 26221575 26221718 -18685852 + L1MA5 LINE L1 4553 4688 -1612 186 43 0 0 chr21 26221718 26221741 -18685829 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4903 175 64 18 chr21 26221741 26222312 -18685258 + L1MA5 LINE L1 4688 5231 -1069 243 61 0 0 chr21 26222312 26222345 -18685225 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4903 175 64 18 chr21 26222345 26223283 -18684287 + L1MA5 LINE L1 5231 6272 -28 8976 113 9 2 chr21 26223283 26224561 -18683009 - HSMAR1 DNA Mariner 0 1287 1 4903 175 64 18 chr21 26224561 26224590 -18682980 + L1MA5 LINE L1 6272 6298 -2 998 210 34 4 chr21 26225080 26225318 -18682252 - Zaphod DNA AcHobo -8 4023 3779 241 326 70 16 chr21 26226688 26226817 -18680753 - L2 LINE L2 -1 3271 3136 29 0 0 0 chr21 26227045 26227074 -18680496 + AT_rich Low_complexity Low_complexity 1 29 0 784 243 6 0 chr21 26228851 26229024 -18678546 - FRAM SINE Alu -5 171 1 999 259 24 43 chr21 26229240 26229739 -18677831 + MLT1H1 LTR MaLR 1 595 0 242 200 63 63 chr21 26229913 26230008 -18677562 - LTR66 LTR ERVL -172 438 344 225 154 0 0 chr21 26230330 26230369 -18677201 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 56 0 0 chr21 26230945 26230981 -18676589 + AT_rich Low_complexity Low_complexity 1 36 0 2073 121 3 16 chr21 26232196 26232501 -18675069 - AluSq SINE Alu -12 301 1 242 376 20 0 chr21 26233046 26233147 -18674423 + L2 LINE L2 3209 3311 -2 777 230 301 28 chr21 26233229 26233621 -18673949 + L2 LINE L2 2321 2819 -495 1200 321 59 22 chr21 26233776 26234237 -18673333 + L2 LINE L2 2815 3292 -21 2286 96 3 0 chr21 26234237 26234529 -18673041 + AluSc SINE Alu 1 293 -16 2224 138 5 37 chr21 26235650 26236026 -18671544 - THE1B LTR MaLR 0 364 1 219 243 86 0 chr21 26236086 26236156 -18671414 - MIR SINE MIR 0 262 187 457 254 83 47 chr21 26236425 26236594 -18670976 - MIR SINE MIR -4 258 84 26 0 0 0 chr21 26236714 26236740 -18670830 + AT_rich Low_complexity Low_complexity 1 26 0 234 150 0 0 chr21 26239143 26239183 -18668387 + (A)n Simple_repeat Simple_repeat 1 40 0 223 82 0 41 chr21 26239258 26239307 -18668263 + (TTG)n Simple_repeat Simple_repeat 1 47 0 192 152 0 0 chr21 26239524 26239557 -18668013 + T-rich Low_complexity Low_complexity 4 36 0 413 125 0 12 chr21 26241105 26241185 -18666385 + (CA)n Simple_repeat Simple_repeat 2 80 0 410 36 18 0 chr21 26241244 26241300 -18666270 + (TG)n Simple_repeat Simple_repeat 2 58 0 201 132 0 0 chr21 26242088 26242126 -18665444 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 2378 138 40 40 chr21 26242170 26242598 -18664972 + MSTA LTR MaLR 1 428 0 256 143 63 0 chr21 26243619 26243682 -18663888 + T-rich Low_complexity Low_complexity 3 69 0 251 285 160 35 chr21 26243745 26243945 -18663625 + MIR SINE MIR 8 232 -30 1498 208 0 0 chr21 26246042 26246316 -18661254 + AluJo SINE Alu 30 303 -9 613 95 0 0 chr21 26246316 26246400 -18661170 + MER72 LTR ERV1 639 722 0 193 355 24 77 chr21 26246829 26246998 -18660572 + MER5A DNA MER1_type 30 189 0 230 218 46 35 chr21 26247770 26247857 -18659713 - L1MC4 LINE L1 -1341 6701 6614 * 241 210 99 0 chr21 26247787 26247868 -18659702 + L1MC4 LINE L1 6614 6702 -1340 1448 173 123 62 chr21 26247894 26248235 -18659335 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr21 26248785 26248813 -18658757 + (CA)n Simple_repeat Simple_repeat 1 28 0 4978 186 134 35 chr21 26249402 26250253 -18657317 - MER52A LTR ERV1 0 1755 989 180 0 0 0 chr21 26250253 26250273 -18657297 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 4978 186 134 35 chr21 26250273 26250888 -18656682 - MER52A LTR ERV1 -766 989 12 2425 54 0 10 chr21 26251568 26251865 -18655705 - AluY SINE Alu -17 294 1 333 156 0 0 chr21 26251903 26251980 -18655590 + (CA)n Simple_repeat Simple_repeat 2 78 0 318 188 0 0 chr21 26251980 26252028 -18655542 - FAM SINE Alu -65 110 63 2131 95 0 3 chr21 26252154 26252438 -18655132 + AluSq SINE Alu 1 283 -30 2943 193 45 62 chr21 26252902 26252994 -18654576 + L1MA9 LINE L1 5519 5611 -701 1938 148 7 0 chr21 26252994 26253285 -18654285 + AluSx SINE Alu 1 293 -19 2943 193 45 62 chr21 26253285 26253963 -18653607 + L1MA9 LINE L1 5611 6276 -36 768 176 0 22 chr21 26254318 26254454 -18653116 + AluJo/FLAM SINE Alu 1 133 -179 408 164 0 0 chr21 26254455 26254522 -18653048 + AluJ/FRAM SINE Alu 228 294 -8 208 320 144 26 chr21 26256280 26256433 -18651137 - MIR SINE MIR 0 262 92 223 323 10 20 chr21 26256444 26256543 -18651027 + L2 LINE L2 923 1020 -2294 450 303 8 0 chr21 26256566 26256685 -18650885 - L2 LINE L2 0 3313 3194 * 2504 304 127 37 chr21 26256671 26258437 -18649133 + L2 LINE L2 1033 2957 -357 16997 91 14 3 chr21 26258563 26260838 -18646732 + HERVL-A2 LTR ERVL 3355 5654 0 2994 96 41 9 chr21 26260838 26261275 -18646295 + MLT2A2 LTR ERVL 1 451 -2 7734 131 36 50 chr21 26261277 26262609 -18644961 - THE1C-int LTR MaLR -266 1314 1 1749 149 73 25 chr21 26262612 26262967 -18644603 - THE1C LTR MaLR -3 372 1 453 277 19 19 chr21 26263040 26263253 -18644317 - L1M4 LINE L1 -2659 3487 3275 1252 278 57 27 chr21 26263523 26264117 -18643453 + HAL1b LINE L1 1 612 -736 297 232 172 40 chr21 26264193 26264344 -18643226 - MLT1A1 LTR MaLR -169 196 26 24 32 0 0 chr21 26265137 26265168 -18642402 + AT_rich Low_complexity Low_complexity 1 31 0 324 308 30 8 chr21 26265677 26265810 -18641760 - MLT1L LTR MaLR -68 547 412 913 231 120 78 chr21 26266398 26266883 -18640687 - MLT1D LTR MaLR 0 505 1 492 262 16 8 chr21 26266901 26267023 -18640547 - L2 LINE L2 -1 3312 3190 859 215 41 50 chr21 26267030 26267249 -18640321 - MER58A DNA MER1_type -6 218 2 199 290 9 37 chr21 26267259 26267366 -18640204 - L2 LINE L2 -125 3188 3085 419 325 103 50 chr21 26267376 26267755 -18639815 - MLT1J2 LTR MaLR -19 431 33 2263 95 0 0 chr21 26267759 26268044 -18639526 + AluSx SINE Alu 1 285 -27 320 315 39 24 chr21 26268231 26268358 -18639212 + MLT1J2 LTR MaLR 84 212 -238 24109 93 16 12 chr21 26268414 26271753 -18635817 - HERVL-A2 LTR ERVL -2303 3351 1 3172 105 16 7 chr21 26271753 26272202 -18635368 - MLT2A2 LTR ERVL 0 453 1 1716 119 15 4 chr21 26272202 26272470 -18635100 + THE1C-int LTR MaLR 1310 1580 0 1639 162 80 26 chr21 26272472 26272824 -18634746 + THE1C LTR MaLR 3 373 -2 181 0 69 0 chr21 26272855 26272884 -18634686 + (TA)n Simple_repeat Simple_repeat 2 32 0 1911 225 91 13 chr21 26272884 26273333 -18634237 - MLT2B1 LTR ERVL -36 484 1 4449 186 16 10 chr21 26273376 26274206 -18633364 - ERVL-B1 LTR ERVL -235 5529 4695 1737 285 92 7 chr21 26274202 26274743 -18632827 - ERVL-B1 LTR ERVL -5173 591 5 * 1001 252 103 30 chr21 26274747 26275158 -18632412 - MLT2B1 LTR ERVL 0 515 3 4562 218 67 84 chr21 26275198 26277214 -18630356 + L1MC3 LINE L1 3530 4649 -1497 1018 108 0 0 chr21 26277214 26277353 -18630217 - AluY SINE Alu -1 310 172 4562 218 67 84 chr21 26277353 26278096 -18629474 + L1MC3 LINE L1 4649 5403 -743 1384 216 19 41 chr21 26278100 26278420 -18629150 + MSTD LTR MaLR 84 396 0 604 88 10 10 chr21 26278420 26278522 -18629048 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 2330 126 5 27 chr21 26279568 26279940 -18627630 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr21 26281190 26281261 -18626309 + AT_rich Low_complexity Low_complexity 1 71 0 1345 68 0 31 chr21 26281352 26281543 -18626027 + L1PA8 LINE L1 5987 6171 -1 225 154 0 0 chr21 26281841 26281880 -18625690 + (TATG)n Simple_repeat Simple_repeat 2 40 0 547 26 26 0 chr21 26282491 26282568 -18625002 + (TA)n Simple_repeat Simple_repeat 1 79 0 251 332 30 10 chr21 26282609 26282719 -18624851 - MIR SINE MIR -63 145 38 21 0 0 0 chr21 26282824 26282845 -18624725 + AT_rich Low_complexity Low_complexity 1 21 0 231 340 142 0 chr21 26283827 26283933 -18623637 + MIR SINE MIR 17 137 -125 25 0 0 0 chr21 26284019 26284044 -18623526 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 26284157 26284186 -18623384 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr21 26284915 26284953 -18622617 + (TG)n Simple_repeat Simple_repeat 1 38 0 264 77 0 0 chr21 26286878 26286917 -18620653 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr21 26287868 26287893 -18619677 + AT_rich Low_complexity Low_complexity 1 25 0 2142 140 30 30 chr21 26288963 26289327 -18618243 + THE1B LTR MaLR 1 364 0 8904 105 120 37 chr21 26289327 26289633 -18617937 + THE1B-int LTR MaLR 1 280 -1300 2245 50 0 0 chr21 26289633 26289892 -18617678 - AluY SINE Alu -52 259 1 8904 105 120 37 chr21 26289892 26291044 -18616526 + THE1B-int LTR MaLR 280 1580 0 2112 154 28 25 chr21 26291044 26291407 -18616163 + THE1B LTR MaLR 1 364 0 294 250 24 0 chr21 26291407 26291491 -18616079 + L1M4 LINE L1 4228 4313 -1833 1747 233 64 8 chr21 26291549 26292046 -18615524 + L1M4 LINE L1 4559 5083 -1063 289 304 87 49 chr21 26292823 26293250 -18614320 - L1ME LINE L1 -327 5794 5352 474 214 139 69 chr21 26293506 26293610 -18613960 - MER5A DNA MER1_type -1 188 66 2412 58 0 10 chr21 26293610 26293904 -18613666 - AluY SINE Alu -11 300 10 474 214 139 69 chr21 26293904 26293972 -18613598 - MER5A DNA MER1_type -123 66 4 21 36 0 0 chr21 26293980 26294008 -18613562 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr21 26294083 26294135 -18613435 + AT_rich Low_complexity Low_complexity 1 52 0 343 290 82 62 chr21 26294152 26294488 -18613082 - L1ME LINE L1 -2050 4096 3754 260 123 88 0 chr21 26294538 26294595 -18612975 - L1MC4 LINE L1 -1328 6714 6653 901 216 9 59 chr21 26295576 26295798 -18611772 + AluJb SINE Alu 88 298 -14 22 0 0 0 chr21 26297848 26297870 -18609700 + AT_rich Low_complexity Low_complexity 1 22 0 195 357 82 52 chr21 26301943 26302271 -18605299 - L2 LINE L2 -676 2638 2301 2038 129 4 0 chr21 26302304 26302614 -18604956 + AluSx SINE Alu 3 313 0 2880 141 89 0 chr21 26302868 26303352 -18604218 - MER1A DNA MER1_type -2 527 1 5922 142 20 31 chr21 26303509 26304592 -18602978 + MER11C LTR ERVK 1 1071 0 1965 163 0 0 chr21 26305154 26305460 -18602110 - AluSx SINE Alu -6 306 1 467 286 99 31 chr21 26305502 26305694 -18601876 - MIR SINE MIR -18 244 40 539 190 0 0 chr21 26308109 26308209 -18599361 + FLAM_A SINE Alu 37 136 -6 233 226 48 12 chr21 26308656 26308740 -18598830 + L1MC4 LINE L1 6616 6702 -1340 519 45 0 0 chr21 26310352 26310418 -18597152 + (CA)n Simple_repeat Simple_repeat 1 66 0 279 253 27 13 chr21 26310528 26310603 -18596967 + L2 LINE L2 2977 3052 -220 23 0 0 0 chr21 26311153 26311176 -18596394 + AT_rich Low_complexity Low_complexity 1 23 0 466 288 25 0 chr21 26311353 26311471 -18596099 + L2 LINE L2 3193 3313 0 628 274 140 0 chr21 26311937 26312101 -18595469 + MER5A DNA MER1_type 3 189 0 203 355 77 24 chr21 26311952 26312121 -18595449 - MER5A DNA MER1_type -3 186 9 * 1800 148 3 23 chr21 26312231 26312535 -18595035 - AluSc SINE Alu -11 298 1 1699 100 0 0 chr21 26313239 26313459 -18594111 - AluSg SINE Alu -90 220 1 1245 27 6 27 chr21 26314026 26314209 -18593361 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 1110 64 0 0 chr21 26314211 26314367 -18593203 + (GGATG)n Simple_repeat Simple_repeat 1 156 0 904 223 120 58 chr21 26314610 26314919 -18592651 - MER63B DNA MER1_type -102 334 7 23 78 0 0 chr21 26315156 26315207 -18592363 + AT_rich Low_complexity Low_complexity 1 51 0 7569 140 12 25 chr21 26315207 26316486 -18591084 - HSMAR2 DNA Mariner -4 1298 36 7586 169 25 11 chr21 26316490 26318906 -18588664 - L1PB1 LINE L1 -21 6846 4401 * 11069 192 111 5 chr21 26318901 26322116 -18585454 - L1PB1 LINE L1 -3302 3560 6 261 137 20 20 chr21 26322133 26322184 -18585386 - HSMAR2 DNA Mariner -1247 55 5 266 272 52 76 chr21 26322439 26322722 -18584848 - L1ME LINE L1 -351 5813 5539 802 146 8 0 chr21 26324634 26324764 -18582806 + FLAM_C SINE Alu 1 131 -2 365 102 17 0 chr21 26326120 26326179 -18581391 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 190 271 98 74 chr21 26327091 26327213 -18580357 - MIR SINE MIR -26 236 112 2198 105 0 10 chr21 26327598 26327911 -18579659 - AluY SINE Alu -1 310 1 25 31 0 0 chr21 26327921 26327953 -18579617 + AT_rich Low_complexity Low_complexity 1 32 0 5014 72 0 0 chr21 26328165 26328816 -18578754 + L1PA8 LINE L1 5514 6164 -8 187 306 32 0 chr21 26329026 26329088 -18578482 - MER5A DNA MER1_type -114 75 12 310 239 69 50 chr21 26329138 26329297 -18578273 - L1ME4a LINE L1 -5 6116 5955 541 249 114 32 chr21 26329330 26329611 -18577959 - L1ME4a LINE L1 -238 5883 5580 35 0 0 0 chr21 26329850 26329885 -18577685 + AT_rich Low_complexity Low_complexity 1 35 0 2020 112 7 0 chr21 26329897 26330174 -18577396 - AluSp SINE Alu -32 281 3 652 227 236 0 chr21 26330708 26330911 -18576659 - MLT1E3 LTR MaLR -6 618 368 234 0 0 0 chr21 26330916 26330942 -18576628 + (T)n Simple_repeat Simple_repeat 1 26 0 209 194 0 0 chr21 26331051 26331087 -18576483 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 66 43 0 0 chr21 26331345 26331439 -18576131 + AT_rich Low_complexity Low_complexity 1 94 0 859 262 84 10 chr21 26331656 26332256 -18575314 - L1ME1 LINE L1 0 6164 5438 257 173 8 71 chr21 26332640 26332767 -18574803 + (TTATA)n Simple_repeat Simple_repeat 5 123 0 * 260 238 18 43 chr21 26332760 26332924 -18574646 + (TATAA)n Simple_repeat Simple_repeat 2 161 0 345 100 0 0 chr21 26333250 26333300 -18574270 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2170 66 63 0 chr21 26334618 26334904 -18572666 + AluSg SINE Alu 1 304 -6 1218 263 222 19 chr21 26337756 26338432 -18569138 - L1MDb LINE L1 -4827 1713 923 264 278 139 75 chr21 26338781 26339112 -18568458 - L1MDb LINE L1 -5888 652 301 25 31 0 0 chr21 26339432 26339464 -18568106 + AT_rich Low_complexity Low_complexity 1 32 0 1350 202 71 34 chr21 26339519 26339871 -18567699 + MLT1A1 LTR MaLR 1 365 0 469 278 178 42 chr21 26339943 26340375 -18567195 + MLT1J LTR MaLR 8 498 -13 853 264 153 37 chr21 26341350 26341835 -18565735 - MLT1H1 LTR MaLR -9 546 6 309 291 0 12 chr21 26342178 26342264 -18565306 - L2 LINE L2 0 3313 3229 219 69 0 0 chr21 26343204 26343233 -18564337 + (CA)n Simple_repeat Simple_repeat 2 30 0 2283 66 36 3 chr21 26343546 26343847 -18563723 + AluY SINE Alu 1 311 0 21 36 0 0 chr21 26345592 26345620 -18561950 + AT_rich Low_complexity Low_complexity 1 28 0 3369 76 7 18 chr21 26346038 26346089 -18561481 - MLT2A2 LTR ERVL 0 453 403 216 0 0 0 chr21 26346089 26346113 -18561457 + (TA)n Simple_repeat Simple_repeat 1 24 0 3369 76 7 18 chr21 26346113 26346519 -18561051 - MLT2A2 LTR ERVL -50 403 1 823 272 103 33 chr21 26346755 26347115 -18560455 + L1ME1 LINE L1 3983 4367 -1779 719 196 111 40 chr21 26347180 26347405 -18560165 + MLT1C LTR MaLR 65 305 -162 3500 121 25 3 chr21 26347427 26347998 -18559572 - L1MA3 LINE L1 0 6305 5723 973 254 99 12 chr21 26348010 26348194 -18559376 + L1ME1 LINE L1 4616 4782 -1364 2050 145 135 5 chr21 26348194 26348573 -18558997 - MSTA LTR MaLR 0 428 1 973 254 99 12 chr21 26348573 26348810 -18558760 + L1ME1 LINE L1 4782 5074 -1072 382 335 25 30 chr21 26348863 26348893 -18558677 + L1ME1 LINE L1 5256 5285 -2710 2159 66 40 7 chr21 26348893 26349194 -18558376 + AluY SINE Alu 1 311 0 382 335 25 30 chr21 26349194 26349363 -18558207 + L1ME1 LINE L1 5285 5454 -2541 1911 168 129 11 chr21 26349383 26349746 -18557824 + MER47B DNA MER2_type 12 417 -1 275 65 11 6 chr21 26349818 26349871 -18557699 - MSTA LTR MaLR -27 428 364 1073 276 44 18 chr21 26349919 26350306 -18557264 + L1ME1 LINE L1 5766 6162 -4 1220 244 58 43 chr21 26350325 26350857 -18556713 + L1ME1 LINE L1 5431 5970 -194 2686 183 20 77 chr21 26350864 26350910 -18556660 + L1MC1 LINE L1 5672 5719 -614 1555 160 43 0 chr21 26350910 26351192 -18556378 - AluJb SINE Alu -14 298 5 2686 183 20 77 chr21 26351192 26351846 -18555724 + L1MC1 LINE L1 5719 6332 -1 491 248 106 0 chr21 26351893 26352034 -18555536 + L1ME1 LINE L1 6006 6161 -5 1331 115 0 5 chr21 26352239 26352448 -18555122 - L1MA3 LINE L1 0 6305 6098 24 32 0 0 chr21 26354834 26354865 -18552705 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr21 26356318 26356363 -18551207 + AT_rich Low_complexity Low_complexity 1 45 0 271 302 87 16 chr21 26357227 26357353 -18550217 + MIR3 SINE MIR 72 206 -2 492 104 0 0 chr21 26357369 26357446 -18550124 - L1PB4 LINE L1 0 6156 6080 1867 152 9 12 chr21 26357695 26358031 -18549539 - L1MA3 LINE L1 -6 6299 5965 225 0 0 0 chr21 26358736 26358761 -18548809 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 407 261 54 0 chr21 26358787 26358898 -18548672 + MIR3 SINE MIR 89 205 -3 761 349 17 38 chr21 26359823 26360244 -18547326 + LTR16A LTR ERVL 13 424 -26 1975 103 4 0 chr21 26360322 26360585 -18546985 - AluSp SINE Alu -26 287 24 258 345 35 9 chr21 26360706 26360822 -18546748 + MIR SINE MIR 49 167 -95 2338 88 0 3 chr21 26360993 26361287 -18546283 - AluY SINE Alu -18 293 1 928 127 0 0 chr21 26361666 26361800 -18545770 - MSTA LTR MaLR -294 134 1 8410 188 20 18 chr21 26361800 26363448 -18544122 - MSTA-int LTR MaLR 0 1651 1 2437 149 28 14 chr21 26363448 26363870 -18543700 - MSTA LTR MaLR 0 428 1 1071 245 60 23 chr21 26364429 26364694 -18542876 + Charlie8 DNA MER1_type 2 276 -2141 3294 49 0 0 chr21 26364856 26365267 -18542303 + L1PA4 LINE L1 5743 6153 -2 2014 119 0 33 chr21 26365410 26365713 -18541857 - AluSg SINE Alu -17 293 1 306 0 0 0 chr21 26365774 26365808 -18541762 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 352 356 126 15 chr21 26366020 26366410 -18541160 + L3 LINE CR1 576 1008 -569 672 222 0 0 chr21 26366417 26366534 -18541036 + FLAM_C SINE Alu 1 117 -16 1935 241 50 56 chr21 26366555 26367111 -18540459 + MLT2B3 LTR ERVL 1 553 -1 834 188 75 0 chr21 26367111 26367271 -18540299 + AluJb SINE Alu 133 304 -8 198 71 0 0 chr21 26367379 26367407 -18540163 + (TGG)n Simple_repeat Simple_repeat 3 30 0 225 0 0 0 chr21 26367408 26367433 -18540137 + (TG)n Simple_repeat Simple_repeat 1 25 0 188 353 98 23 chr21 26367470 26367643 -18539927 + L3 LINE CR1 1157 1342 -235 203 292 31 15 chr21 26367761 26367826 -18539744 + L3 LINE CR1 1511 1576 -1 239 250 28 14 chr21 26367924 26367996 -18539574 + LTR67 LTR ERVL 3 75 -482 25 51 0 0 chr21 26369376 26369415 -18538155 + AT_rich Low_complexity Low_complexity 1 39 0 247 149 15 60 chr21 26369886 26369953 -18537617 + MLT1D LTR MaLR 442 505 0 2096 248 23 18 chr21 26369954 26370555 -18537015 + MLT1D-int LTR MaLR 2 605 -766 1250 281 31 112 chr21 26370768 26371500 -18536070 + MLT1D-int LTR MaLR 698 1370 -1 1197 249 51 44 chr21 26371579 26371989 -18535581 + MLT1D LTR MaLR 93 505 0 253 227 0 15 chr21 26372026 26372092 -18535478 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1096 184 13 4 chr21 26372128 26372362 -18535208 - Tigger6a DNA MER2_type -39 1044 809 883 231 77 55 chr21 26372367 26372679 -18534891 + L1MD2 LINE L1 5825 6143 -216 461 244 10 4 chr21 26372701 26372822 -18534748 + L1MD2 LINE L1 6232 6330 -14 3223 223 25 32 chr21 26372823 26373052 -18534518 - Tigger6a DNA MER2_type -803 794 565 393 22 0 0 chr21 26373052 26373098 -18534472 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2301 76 0 7 chr21 26373101 26373390 -18534180 - AluSg SINE Alu -23 287 1 3223 223 25 32 chr21 26373390 26373956 -18533614 - Tigger6a DNA MER2_type -1034 563 1 1288 171 184 40 chr21 26374102 26374476 -18533094 - MSTA LTR MaLR 0 428 1 1400 195 70 17 chr21 26376033 26376320 -18531250 - MLT1A1 LTR MaLR -51 314 13 2040 112 0 86 chr21 26378634 26378972 -18528598 + AluSx SINE Alu 1 309 -3 344 218 30 0 chr21 26378972 26379105 -18528465 + (TA)n Simple_repeat Simple_repeat 2 138 0 262 255 0 0 chr21 26379179 26379230 -18528340 - MER47B DNA MER2_type -366 52 2 1593 175 2 126 chr21 26379428 26379873 -18527697 + MLT1B LTR MaLR 1 390 0 276 30 0 0 chr21 26381255 26381288 -18526282 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 58 87 0 chr21 26381923 26381992 -18525578 - MADE1 DNA Mariner -5 75 1 6458 135 61 11 chr21 26382151 26383322 -18524248 + Tigger3b DNA MER2_type 1 1229 -2 660 287 16 11 chr21 26383534 26383722 -18523848 + MIR SINE MIR 74 262 0 1501 154 136 27 chr21 26383844 26384182 -18523388 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr21 26384478 26384506 -18523064 + AT_rich Low_complexity Low_complexity 1 28 0 1643 155 136 6 chr21 26385186 26385509 -18522061 + MLT1A1 LTR MaLR 1 365 0 23 78 0 0 chr21 26387305 26387356 -18520214 + AT_rich Low_complexity Low_complexity 1 51 0 2126 165 50 26 chr21 26387683 26388107 -18519463 + Tigger2a DNA MER2_type 1 434 0 232 295 93 16 chr21 26388495 26388624 -18518946 - MIR SINE MIR -2 260 122 291 308 22 0 chr21 26388902 26388993 -18518577 - MLT1J2 LTR MaLR -255 195 103 4016 197 61 45 chr21 26389599 26390296 -18517274 - MER21A LTR ERV1 0 931 215 2079 87 0 81 chr21 26390296 26390617 -18516953 - AluSc SINE Alu -10 299 5 4016 197 61 45 chr21 26390617 26390821 -18516749 - MER21A LTR ERV1 -716 215 16 1506 245 128 10 chr21 26391581 26392088 -18515482 + MLT1F1 LTR MaLR 1 567 0 489 330 127 9 chr21 26392192 26392413 -18515157 - MIR SINE MIR -10 252 6 24 32 0 0 chr21 26392594 26392625 -18514945 + AT_rich Low_complexity Low_complexity 1 31 0 2646 71 103 7 chr21 26392751 26393160 -18514410 + LTR7 LTR ERV1 1 448 -2 2933 114 6 21 chr21 26393162 26393628 -18513942 + HERVH LTR ERV1 1 459 -7254 14687 91 11 35 chr21 26393682 26395940 -18511630 + HERVH LTR ERV1 793 2995 -4718 910 129 27 0 chr21 26395919 26396066 -18511504 + HERVH LTR ERV1 3140 3290 -4423 * 3459 105 0 6 chr21 26396056 26396561 -18511009 + HERVH LTR ERV1 3492 3993 -3720 4414 121 8 3 chr21 26396565 26397219 -18510351 + HERVH LTR ERV1 4490 5146 -2567 1322 119 25 38 chr21 26397202 26397437 -18510133 + HERVH LTR ERV1 5588 5819 -1894 * 2424 95 45 13 chr21 26397437 26397815 -18509755 + HERVH LTR ERV1 7324 7713 0 2693 70 89 40 chr21 26397815 26398242 -18509328 + LTR7 LTR ERV1 1 448 -2 182 355 75 0 chr21 26399054 26399147 -18508423 - L2 LINE L2 -775 2539 2440 213 127 0 55 chr21 26399665 26399720 -18507850 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 288 53 0 0 chr21 26400110 26400148 -18507422 + (TG)n Simple_repeat Simple_repeat 2 39 0 2127 108 0 14 chr21 26400671 26400959 -18506611 + AluSq SINE Alu 1 284 -29 234 0 0 0 chr21 26400962 26400988 -18506582 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 466 288 147 51 chr21 26401376 26401668 -18505902 - MLT1J LTR MaLR -141 370 51 21 36 0 0 chr21 26402604 26402632 -18504938 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 26403068 26403091 -18504479 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 26403131 26403153 -18504417 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr21 26404354 26404378 -18503192 + (TA)n Simple_repeat Simple_repeat 1 24 0 662 158 13 20 chr21 26405581 26405733 -18501837 + CT-rich Low_complexity Low_complexity 3 153 0 665 203 43 0 chr21 26405736 26405874 -18501696 - FRAM SINE Alu 0 40 1 21 0 0 0 chr21 26406038 26406059 -18501511 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 26406282 26406305 -18501265 + AT_rich Low_complexity Low_complexity 1 23 0 412 341 96 19 chr21 26406507 26406768 -18500802 - L2 LINE L2 -35 3278 2998 580 356 78 13 chr21 26406799 26407173 -18500397 - L2 LINE L2 -390 2924 2527 404 174 0 0 chr21 26407206 26407275 -18500295 - MSTB LTR MaLR -2 424 356 2351 106 0 0 chr21 26407275 26407587 -18499983 + AluSx SINE Alu 1 312 0 565 154 35 14 chr21 26407594 26407737 -18499833 + GA-rich Low_complexity Low_complexity 1 146 0 1854 173 60 6 chr21 26407748 26408095 -18499475 - MSTB LTR MaLR -56 370 5 352 211 89 27 chr21 26408107 26408270 -18499300 - MER106B DNA MER1_type -43 1016 22 226 351 111 29 chr21 26408308 26408516 -18499054 - L2 LINE L2 -796 2518 2294 1389 17 23 0 chr21 26408757 26408929 -18498641 - L1P2 LINE L1 -693 5461 5286 1964 34 0 0 chr21 26408929 26409162 -18498408 + L1PA5 LINE L1 5919 6154 0 2292 171 24 30 chr21 26410829 26411297 -18496273 - L1MA8 LINE L1 -173 6118 5654 423 52 0 0 chr21 26411335 26411393 -18496177 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 21 0 0 0 chr21 26411424 26411445 -18496125 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr21 26411541 26411578 -18495992 + AT_rich Low_complexity Low_complexity 1 37 0 937 230 51 56 chr21 26412294 26412786 -18494784 + L1ME LINE L1 5079 5566 -598 1944 151 71 6 chr21 26412786 26413138 -18494432 + THE1C LTR MaLR 1 375 0 7401 140 147 28 chr21 26413141 26414552 -18493018 + THE1C-int LTR MaLR 3 1580 0 1807 179 78 6 chr21 26414554 26414901 -18492669 + THE1C LTR MaLR 3 374 -1 645 230 56 10 chr21 26415018 26415214 -18492356 + L1MA4 LINE L1 5996 6200 -100 523 128 59 59 chr21 26415214 26415316 -18492254 - MLT1D LTR MaLR -401 104 3 278 258 0 16 chr21 26415327 26415389 -18492181 + MLT1I LTR MaLR 347 407 -2 527 203 0 51 chr21 26415401 26415559 -18492011 + L1MA4 LINE L1 6151 6300 0 302 103 0 69 chr21 26415715 26415773 -18491797 - Alu SINE Alu -1 299 246 234 284 21 21 chr21 26415906 26416001 -18491569 + MIR SINE MIR 97 191 -71 24 32 0 0 chr21 26416636 26416667 -18490903 + AT_rich Low_complexity Low_complexity 1 31 0 194 310 0 0 chr21 26417158 26417216 -18490354 - MIR SINE MIR -45 217 160 302 89 0 0 chr21 26417371 26417416 -18490154 - MADE1 DNA Mariner -34 46 2 1426 219 11 3 chr21 26417541 26417824 -18489746 + AluJo SINE Alu 1 285 -27 201 133 0 44 chr21 26417824 26417869 -18489701 + (TTAAA)n Simple_repeat Simple_repeat 1 43 0 1821 190 77 65 chr21 26417931 26418426 -18489144 - MLT1D LTR MaLR 0 505 5 281 301 21 0 chr21 26419147 26419240 -18488330 - MLT1J2 LTR MaLR -2 448 354 744 220 32 61 chr21 26419266 26419492 -18488078 - MLT1B LTR MaLR 0 390 155 6604 102 19 5 chr21 26419518 26420520 -18487050 - L1MA1 LINE L1 -2 6300 5285 3411 193 19 2 chr21 26420518 26421367 -18486203 - L1 LINE L1 -2068 4078 3047 * 577 131 174 37 chr21 26421368 26421530 -18486040 - MLT1B LTR MaLR -212 162 3 367 330 82 41 chr21 26421531 26421849 -18485721 - MLT1J2 LTR MaLR -115 335 5 455 235 80 5 chr21 26421884 26422084 -18485486 + L1M4 LINE L1 4246 4460 -1686 * 2120 240 89 7 chr21 26422066 26422762 -18484808 + L1M4 LINE L1 4302 5054 -1092 262 212 24 12 chr21 26422780 26422865 -18484705 + L1M4 LINE L1 5116 5201 -945 619 208 11 22 chr21 26422951 26423109 -18484461 + L1M4 LINE L1 4676 4828 -1318 329 347 106 73 chr21 26423110 26423563 -18484007 + L1PBb LINE L1 62 529 -6320 396 292 43 43 chr21 26423691 26423737 -18483833 + L1PBb LINE L1 710 755 -6094 2455 111 19 8 chr21 26423737 26424097 -18483473 - THE1B LTR MaLR 0 364 1 396 292 43 43 chr21 26424097 26424259 -18483311 + L1PBb LINE L1 754 918 -5931 255 247 65 0 chr21 26424695 26424772 -18482798 + L1PBb LINE L1 1477 1558 -5290 * 2324 238 8 20 chr21 26424767 26425579 -18481991 + L1PB4 LINE L1 1341 2234 -4615 1505 246 11 34 chr21 26425573 26426020 -18481550 + L1PB4 LINE L1 3091 3527 -3322 * 1150 118 65 0 chr21 26426022 26426192 -18481378 + AluSg/x SINE Alu 130 310 0 3158 228 21 24 chr21 26426207 26427152 -18480418 + L1PB4 LINE L1 3518 4459 -2390 2163 114 11 49 chr21 26427152 26427520 -18480050 - THE1A LTR MaLR 0 355 2 11622 99 5 2 chr21 26427526 26429096 -18478474 - THE1A-int LTR MaLR -6 1574 1 2132 125 26 14 chr21 26429096 26429447 -18478123 - THE1A LTR MaLR 0 355 1 6692 192 17 14 chr21 26429447 26431827 -18475743 + L1PB4 LINE L1 4455 6845 -14 28 29 0 0 chr21 26431827 26431862 -18475708 + AT_rich Low_complexity Low_complexity 1 35 0 31 58 0 0 chr21 26431895 26431947 -18475623 + AT_rich Low_complexity Low_complexity 1 52 0 717 220 34 0 chr21 26431950 26432127 -18475443 + L1M4 LINE L1 3621 3803 -2343 * 754 222 12 12 chr21 26432117 26432284 -18475286 + L1M4 LINE L1 5454 5620 -564 6891 156 17 71 chr21 26432799 26435189 -18472381 + L1MA1 LINE L1 4053 6302 0 2499 102 16 0 chr21 26435263 26435635 -18471935 + L1PA13 LINE L1 5782 6159 -4 250 338 88 19 chr21 26435773 26435933 -18471637 - MIR SINE MIR -14 248 78 448 305 77 21 chr21 26435977 26436432 -18471138 + LTR33A LTR ERVL 11 521 -2 337 279 164 0 chr21 26436719 26436884 -18470686 + MIR SINE MIR 57 248 -14 2167 106 0 29 chr21 26436899 26437211 -18470359 + AluSg SINE Alu 1 303 -7 2387 79 3 0 chr21 26437543 26437835 -18469735 + AluY SINE Alu 1 293 -18 2382 77 7 3 chr21 26438041 26438351 -18469219 - AluSp SINE Alu 0 313 3 198 0 0 0 chr21 26438494 26438516 -18469054 + (CAA)n Simple_repeat Simple_repeat 2 23 0 301 296 0 0 chr21 26439694 26439765 -18467805 - MIR SINE MIR -174 88 18 270 360 48 20 chr21 26440286 26440433 -18467137 + MIR3 SINE MIR 33 183 -25 316 375 67 18 chr21 26440807 26441138 -18466432 - L2 LINE L2 -337 2977 2631 2588 116 14 30 chr21 26442518 26442958 -18464612 - L1PA12 LINE L1 -2 6166 5734 2374 97 6 0 chr21 26443977 26444288 -18463282 + AluSq SINE Alu 1 313 0 22 0 0 0 chr21 26446461 26446483 -18461087 + AT_rich Low_complexity Low_complexity 1 22 0 382 346 15 8 chr21 26446819 26446949 -18460621 + MIR SINE MIR 20 150 -112 300 299 36 29 chr21 26448819 26448956 -18458614 + HERVL LTR ERVL 4647 4784 -870 3007 81 22 46 chr21 26448971 26449426 -18458144 - MLT2A1 LTR ERVL 0 444 1 15858 73 18 0 chr21 26449428 26449634 -18457936 - HERVL-A1 LTR ERVL -2 5652 5451 189 0 0 0 chr21 26449634 26449655 -18457915 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 15858 73 18 0 chr21 26449655 26451481 -18456089 - HERVL-A1 LTR ERVL -203 5451 3583 2257 106 47 9 chr21 26451482 26451837 -18455733 - MLT2A1 LTR ERVL -125 319 1 311 356 0 8 chr21 26451966 26452084 -18455486 + MIR SINE MIR 146 262 0 611 273 90 42 chr21 26452100 26452500 -18455070 - HAL1b LINE L1 -804 544 126 24 0 0 0 chr21 26452906 26452930 -18454640 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr21 26453156 26453189 -18454381 + AT_rich Low_complexity Low_complexity 1 33 0 271 339 88 23 chr21 26453885 26454056 -18453514 + MLT1J LTR MaLR 238 419 -92 270 283 33 42 chr21 26455445 26455565 -18452005 - MIR SINE MIR -32 230 112 995 62 34 28 chr21 26456329 26456508 -18451062 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 265 174 29 14 chr21 26456508 26456577 -18450993 + GA-rich Low_complexity Low_complexity 4 73 0 1513 252 80 10 chr21 26456594 26457082 -18450488 - L1MC4 LINE L1 -238 7804 7283 1512 250 89 55 chr21 26457113 26457130 -18450440 - L1MC4 LINE L1 -950 7092 7077 1564 144 144 28 chr21 26457130 26457456 -18450114 - THE1B LTR MaLR 0 364 1 1512 250 89 55 chr21 26457456 26458043 -18449527 - L1MC4 LINE L1 -965 7077 6467 595 166 0 123 chr21 26458174 26458361 -18449209 - MER53 DNA DNA -3 186 23 266 238 16 0 chr21 26458979 26459101 -18448469 + GA-rich Low_complexity Low_complexity 1 123 0 240 271 75 28 chr21 26459348 26459455 -18448115 + MER20B DNA MER1_type 2 113 -670 477 236 153 0 chr21 26460219 26460376 -18447194 + MIR SINE MIR 71 251 -11 24 0 0 0 chr21 26460895 26460919 -18446651 + AT_rich Low_complexity Low_complexity 1 24 0 276 305 46 38 chr21 26461741 26461872 -18445698 + L2 LINE L2 3174 3305 -8 217 274 18 134 chr21 26461876 26462040 -18445530 - L3 LINE CR1 -242 1335 1191 558 318 85 19 chr21 26462385 26462643 -18444927 - L3 LINE CR1 -611 966 692 21 0 0 0 chr21 26462651 26462672 -18444898 + AT_rich Low_complexity Low_complexity 1 21 0 1302 234 90 9 chr21 26462718 26463064 -18444506 - MLT1A2 LTR MaLR 0 374 1 302 255 34 107 chr21 26463421 26463570 -18444000 - MER5A DNA MER1_type -51 138 1 244 347 24 30 chr21 26464227 26464394 -18443176 + L2 LINE L2 2694 2859 -455 184 366 12 24 chr21 26464572 26464654 -18442916 - MIR SINE MIR -169 93 13 233 333 145 22 chr21 26464836 26464974 -18442596 + L2 LINE L2 3111 3265 -7 9144 119 13 6 chr21 26465081 26466407 -18441163 + L1P3 LINE L1 6 1340 -5121 2850 194 32 0 chr21 26466411 26466937 -18440633 + L1M1 LINE L1 1012 1554 -6011 753 303 21 17 chr21 26467775 26468009 -18439561 + MIR SINE MIR 1 235 -27 29 60 0 0 chr21 26468108 26468158 -18439412 + AT_rich Low_complexity Low_complexity 1 50 0 1569 158 27 79 chr21 26468264 26468593 -18438977 + AluJo SINE Alu 1 312 0 333 0 0 0 chr21 26469321 26469358 -18438212 + (CA)n Simple_repeat Simple_repeat 1 37 0 26 0 0 0 chr21 26469859 26469885 -18437685 + AT_rich Low_complexity Low_complexity 1 26 0 335 322 104 0 chr21 26472303 26472418 -18435152 + L2 LINE L2 3123 3249 -23 1085 358 50 18 chr21 26472912 26473597 -18433973 + ERVL LTR ERVL 4525 5231 -533 940 296 105 39 chr21 26473931 26474418 -18433152 + LTR33 LTR ERVL 3 521 0 198 0 0 0 chr21 26474743 26474765 -18432805 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 269 256 0 0 chr21 26475421 26475507 -18432063 + HAL1 LINE L1 998 1083 -1424 368 263 101 34 chr21 26475575 26475754 -18431816 + HAL1 LINE L1 1112 1302 -1205 289 256 68 30 chr21 26475819 26475952 -18431618 + HAL1 LINE L1 1397 1534 -973 22 56 0 0 chr21 26475982 26476018 -18431552 + AT_rich Low_complexity Low_complexity 1 36 0 212 133 44 0 chr21 26476054 26476099 -18431471 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3701 175 7 1 chr21 26476379 26477054 -18430516 + L1 LINE L1 3586 4264 -1882 4144 117 18 12 chr21 26477054 26477725 -18429845 + L1MA3 LINE L1 5629 6305 0 311 353 21 27 chr21 26477805 26477992 -18429578 - MIR SINE MIR -21 241 56 1038 174 38 24 chr21 26478046 26478259 -18429311 - L1PA16 LINE L1 0 6166 5951 336 308 29 76 chr21 26479768 26479940 -18427630 - MIR SINE MIR -89 173 10 363 222 99 37 chr21 26480078 26480240 -18427330 + L1ME4a LINE L1 5936 6107 -14 267 67 22 22 chr21 26483913 26483958 -18423612 + L2 LINE L2 3269 3313 0 648 181 35 91 chr21 26484205 26484404 -18423166 - MER53 DNA DNA 0 189 2 21 0 0 0 chr21 26485322 26485343 -18422227 + AT_rich Low_complexity Low_complexity 1 21 0 690 165 0 0 chr21 26485784 26485899 -18421671 - MER2 DNA MER2_type -147 198 84 964 164 0 0 chr21 26485901 26486081 -18421489 - AluSg/x SINE Alu 0 319 140 606 177 21 0 chr21 26486081 26486177 -18421393 - MER2 DNA MER2_type -246 99 2 207 0 0 0 chr21 26486610 26486633 -18420937 + (CA)n Simple_repeat Simple_repeat 2 24 0 504 0 0 0 chr21 26487434 26487490 -18420080 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 273 275 28 46 chr21 26488951 26489169 -18418401 - L1MEd LINE L1 -3790 2339 2126 317 249 202 26 chr21 26489222 26489415 -18418155 - HAL1 LINE L1 -1293 1214 988 632 255 10 65 chr21 26489455 26489592 -18417978 + MER20 DNA MER1_type 31 155 -64 1586 211 59 6 chr21 26489592 26489948 -18417622 - THE1C LTR MaLR 0 375 1 632 255 10 65 chr21 26489948 26490010 -18417560 + MER20 DNA MER1_type 155 219 0 825 268 69 64 chr21 26490309 26490737 -18416833 - L1MEd LINE L1 -4864 1255 917 2128 111 0 20 chr21 26490737 26491034 -18416536 - AluSg SINE Alu -19 291 1 825 268 69 64 chr21 26491034 26491367 -18416203 - L1MEd LINE L1 -5202 917 587 529 260 119 17 chr21 26492155 26492332 -18415238 - MIR SINE MIR -58 204 10 30 36 0 18 chr21 26493635 26493654 -18413916 + AT_rich Low_complexity Low_complexity 1 19 -35 1469 76 212 8 chr21 26493654 26493904 -18413666 + AluY SINE Alu 1 301 0 30 36 0 18 chr21 26493904 26493939 -18413631 + AT_rich Low_complexity Low_complexity 19 54 0 3041 100 9 0 chr21 26494028 26494458 -18413112 + MER57B LTR ERV1 1 434 0 2014 95 13 33 chr21 26495107 26495412 -18412158 - AluSx SINE Alu -13 299 1 1972 186 43 2 chr21 26495420 26495813 -18411757 - MLT2C2 LTR ERVL -55 409 1 25 0 0 0 chr21 26495857 26495882 -18411688 + AT_rich Low_complexity Low_complexity 1 25 0 936 170 12 0 chr21 26496031 26496202 -18411368 + AluSq SINE Alu 136 308 -5 985 192 71 86 chr21 26496336 26496591 -18410979 + AluJo SINE Alu 37 287 -25 48 18 0 0 chr21 26496591 26496646 -18410924 + AT_rich Low_complexity Low_complexity 1 55 0 298 348 26 26 chr21 26497281 26497396 -18410174 + MIR SINE MIR 12 126 -136 1108 263 25 12 chr21 26497534 26497857 -18409713 - L1ME1 LINE L1 -26 6140 5814 1136 161 27 140 chr21 26497946 26498282 -18409288 - AluYb8 SINE Alu -10 298 1 1462 272 66 22 chr21 26498398 26499087 -18408483 + L1ME3 LINE L1 5138 5856 -306 1674 80 9 0 chr21 26499090 26499303 -18408267 - AluSc SINE Alu -9 300 86 644 277 22 0 chr21 26499303 26499487 -18408083 + L1ME3 LINE L1 5975 6162 0 25 51 0 0 chr21 26499753 26499792 -18407778 + AT_rich Low_complexity Low_complexity 1 39 0 2067 132 36 36 chr21 26501210 26501574 -18405996 - THE1B LTR MaLR 0 364 1 207 372 28 16 chr21 26502660 26502879 -18404691 - L2 LINE L2 -1880 1434 1166 571 255 120 14 chr21 26502920 26503136 -18404434 + MER46C DNA MER2_type 2 240 -98 384 156 228 78 chr21 26503554 26503721 -18403849 - MLT1G LTR MaLR 0 555 364 501 219 214 34 chr21 26503765 26503943 -18403627 - MLT1G LTR MaLR -291 299 90 379 302 52 17 chr21 26504036 26504208 -18403362 + L2 LINE L2 1900 2077 -1237 918 257 217 20 chr21 26504298 26504703 -18402867 - MLT1D LTR MaLR 0 505 21 298 298 135 62 chr21 26504719 26505105 -18402465 + L2 LINE L2 2168 2581 -733 349 350 62 21 chr21 26505187 26505559 -18402011 + L2 LINE L2 2480 2866 -448 823 241 80 60 chr21 26505855 26506220 -18401350 - HsTC2 DNA Tc2 -70 1828 1281 227 237 70 61 chr21 26506228 26506342 -18401228 - HsTC2 DNA Tc2 -1771 127 13 1382 202 34 41 chr21 26507300 26507654 -18399916 - MLT1A1 LTR MaLR -11 354 5 245 229 49 139 chr21 26507871 26507924 -18399646 - MIR SINE MIR -102 160 104 1825 221 63 45 chr21 26507924 26508417 -18399153 + MLT1D LTR MaLR 1 502 -3 245 229 49 139 chr21 26508417 26508507 -18399063 - MIR SINE MIR -158 104 30 2630 206 45 12 chr21 26509035 26509632 -18397938 + L1PB4 LINE L1 5537 6153 -3 22 0 0 0 chr21 26509729 26509751 -18397819 + AT_rich Low_complexity Low_complexity 1 22 0 553 232 13 13 chr21 26510401 26510552 -18397018 + MIR SINE MIR 112 262 0 3049 128 35 72 chr21 26510660 26511284 -18396286 + L1MA5A LINE L1 5693 6293 -4 1593 181 20 13 chr21 26511313 26511617 -18395953 + AluJo SINE Alu 7 312 0 620 237 14 0 chr21 26511805 26511944 -18395626 + MER82 DNA MER2_type 1 141 -512 1942 197 27 22 chr21 26512417 26512828 -18394742 + MER82 DNA MER2_type 199 611 -42 1241 34 0 0 chr21 26512828 26512976 -18394594 - L1PA5 LINE L1 -292 5862 5715 1262 62 0 0 chr21 26512976 26513128 -18394442 + L1PA5 LINE L1 5986 6145 -9 273 256 0 35 chr21 26514151 26514237 -18393333 + MIR SINE MIR 82 164 -98 282 95 0 0 chr21 26516075 26516117 -18391453 + (CA)n Simple_repeat Simple_repeat 2 43 0 312 299 130 43 chr21 26516434 26516618 -18390952 + L1ME3A LINE L1 5375 5574 -592 387 342 85 14 chr21 26516668 26516963 -18390607 + L1ME3A LINE L1 5622 5937 -233 3693 175 34 1 chr21 26517431 26518138 -18389432 + L1MA5 LINE L1 5548 6277 -23 243 0 0 0 chr21 26519823 26519850 -18387720 + (A)n Simple_repeat Simple_repeat 1 27 0 198 153 51 0 chr21 26519861 26519920 -18387650 + (TA)n Simple_repeat Simple_repeat 2 63 0 810 173 11 73 chr21 26519930 26520041 -18387529 + MLT1C LTR MaLR 34 130 -337 1962 130 0 52 chr21 26520041 26520371 -18387199 - AluSq SINE Alu 0 313 1 810 173 11 73 chr21 26520371 26520450 -18387120 + MLT1C LTR MaLR 130 212 -255 2248 144 19 14 chr21 26520451 26520813 -18386757 - THE1B LTR MaLR 0 364 1 10854 112 1 32 chr21 26520813 26522425 -18385145 - THE1B-int LTR MaLR 0 1580 19 2078 164 39 30 chr21 26522441 26522985 -18384585 - MLT2A2 LTR ERVL 0 554 2 1449 190 20 0 chr21 26522986 26523239 -18384331 + MLT1C LTR MaLR 209 466 -1 198 0 0 0 chr21 26523705 26523727 -18383843 + (GA)n Simple_repeat Simple_repeat 1 22 0 256 200 0 0 chr21 26523984 26524034 -18383536 - MIR SINE MIR -3 259 210 189 339 32 16 chr21 26525245 26525307 -18382263 - MIR SINE MIR -59 149 87 434 259 86 66 chr21 26526050 26526293 -18381277 - MER21B LTR ERV1 -193 670 423 419 246 74 59 chr21 26526298 26526501 -18381069 + LTR40a LTR ERVL 314 519 0 401 280 7 42 chr21 26526593 26526736 -18380834 + L2 LINE L2 1820 1957 -1357 883 155 55 3 chr21 26526766 26527030 -18380540 + Tigger2 DNA MER2_type 2360 2708 -10 255 238 16 16 chr21 26527036 26527099 -18380471 + MLT2E LTR ERVL 49 111 -517 656 288 150 28 chr21 26527171 26527525 -18380045 + MLT2E LTR ERVL 230 626 -2 442 223 84 24 chr21 26527759 26527925 -18379645 + MLT1B LTR MaLR 1 176 -214 291 93 0 0 chr21 26527925 26527968 -18379602 + (TC)n Simple_repeat Simple_repeat 1 43 0 230 350 62 58 chr21 26528377 26528603 -18378967 + L2 LINE L2 2857 3083 -189 189 395 101 0 chr21 26528728 26528837 -18378733 + L2 LINE L2 3151 3270 -2 194 328 0 0 chr21 26530875 26530933 -18376637 + MIR3 SINE MIR 150 207 -1 363 23 0 0 chr21 26531499 26531543 -18376027 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 255 351 21 0 chr21 26531561 26531655 -18375915 + MIR SINE MIR 20 115 -147 395 268 105 69 chr21 26531764 26532136 -18375434 + MLT1J2 LTR MaLR 9 399 -51 3452 81 13 0 chr21 26532273 26532720 -18374850 + MLT2A2 LTR ERVL 1 453 0 20217 88 10 6 chr21 26532720 26532844 -18374726 + HERVL-A2 LTR ERVL 1 123 -5531 2257 66 0 0 chr21 26532844 26533116 -18374454 - AluY SINE Alu -3 308 37 20217 88 10 6 chr21 26533116 26535679 -18371891 + HERVL-A2 LTR ERVL 123 2698 -2956 1027 76 0 0 chr21 26535678 26535810 -18371760 + HERVL-A2 LTR ERVL 3066 3197 -2457 * 792 70 0 0 chr21 26535805 26535905 -18371665 + HERVL-A2 LTR ERVL 3919 4018 -1636 * 15596 86 2 2 chr21 26535915 26537942 -18369628 + HERVL-A2 LTR ERVL 2691 4717 -937 1622 86 66 0 chr21 26537940 26538197 -18369373 + HERVL-A2 LTR ERVL 5379 5652 -2 * 2882 93 79 0 chr21 26538199 26538619 -18368951 + MLT2A2 LTR ERVL 1 453 0 290 300 76 35 chr21 26539826 26540130 -18367440 + MLT1J1 LTR MaLR 69 349 -60 294 164 0 0 chr21 26540400 26540455 -18367115 + (TA)n Simple_repeat Simple_repeat 1 55 0 294 235 12 25 chr21 26541050 26541131 -18366439 + LTR33A LTR ERVL 440 519 -4 227 268 0 0 chr21 26541256 26541327 -18366243 + A-rich Low_complexity Low_complexity 1 71 0 4946 236 98 27 chr21 26542504 26542633 -18364937 + L1M4 LINE L1 20 138 -6508 192 97 0 0 chr21 26542633 26542664 -18364906 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4946 236 98 27 chr21 26542664 26544449 -18363121 + L1M4 LINE L1 138 2036 -4610 2022 286 50 16 chr21 26544450 26545069 -18362501 + MER76 LTR ERV 24 663 -25 2156 115 0 50 chr21 26545093 26545414 -18362156 + AluSg SINE Alu 6 310 0 311 298 34 96 chr21 26545414 26545706 -18361864 + L1M4 LINE L1 2201 2474 -4351 237 241 59 12 chr21 26545711 26545881 -18361689 + L1M4 LINE L1 2399 2576 -4070 230 125 21 0 chr21 26545884 26545932 -18361638 + (TA)n Simple_repeat Simple_repeat 2 50 0 331 298 26 0 chr21 26545947 26546061 -18361509 + L1M4 LINE L1 1934 2050 -4596 360 167 0 0 chr21 26546063 26546123 -18361447 + MER76 LTR ERV 1 60 -628 222 118 0 0 chr21 26546128 26546162 -18361408 + (TA)n Simple_repeat Simple_repeat 2 35 0 291 93 0 0 chr21 26546214 26546257 -18361313 + (TA)n Simple_repeat Simple_repeat 2 44 0 2569 246 22 9 chr21 26546257 26547073 -18360497 + L1M4 LINE L1 2611 3437 -3207 309 254 45 36 chr21 26547086 26547196 -18360374 + LTR40b LTR ERVL 25 135 -327 1709 142 81 42 chr21 26548078 26548438 -18359132 + THE1C LTR MaLR 1 374 -1 9481 125 44 17 chr21 26548440 26549977 -18357593 + THE1C-int LTR MaLR 2 1580 0 2040 150 16 47 chr21 26549977 26550364 -18357206 + THE1C LTR MaLR 1 375 0 297 216 32 112 chr21 26550839 26550964 -18356606 - L2 LINE L2 -8 3305 3191 215 95 32 32 chr21 26551019 26551082 -18356488 + (TATAA)n Simple_repeat Simple_repeat 4 66 0 1142 231 85 67 chr21 26551347 26551736 -18355834 + MSTD LTR MaLR 1 396 0 1246 219 92 8 chr21 26551765 26552125 -18355445 - L1MD1 LINE L1 0 6242 5853 * 1524 247 47 3 chr21 26552118 26552656 -18354914 - L1M4c LINE L1 -4523 1780 978 5133 248 55 26 chr21 26552715 26553923 -18353647 - L1MDa LINE L1 -1902 4638 3466 1437 229 7 0 chr21 26553923 26554224 -18353346 + AluJb SINE Alu 1 303 -9 5133 248 55 26 chr21 26554224 26555583 -18351987 - L1MDa LINE L1 -3074 3466 2005 955 209 23 151 chr21 26555618 26555846 -18351724 + MLT1A2 LTR MaLR 9 166 -208 270 0 0 0 chr21 26555846 26555876 -18351694 + (CA)n Simple_repeat Simple_repeat 1 30 0 955 209 23 151 chr21 26555876 26556044 -18351526 + MLT1A2 LTR MaLR 166 354 -20 1508 256 108 13 chr21 26556059 26557769 -18349801 - L1MDa LINE L1 -4529 2011 21 213 303 141 28 chr21 26559201 26559343 -18348227 + MIR3 SINE MIR 24 181 -27 180 200 0 0 chr21 26559620 26559665 -18347905 + (CA)n Simple_repeat Simple_repeat 1 45 0 352 376 0 0 chr21 26559691 26559808 -18347762 - L2 LINE L2 -15 3257 3141 8009 78 4 4 chr21 26560035 26561106 -18346464 - MER11C LTR ERVK 0 1071 1 251 265 157 0 chr21 26561221 26561304 -18346266 + Ricksha DNA DNA 250 345 -1701 1287 294 144 35 chr21 26561304 26561902 -18345668 + MLT2F LTR ERVL 1 663 0 587 89 0 0 chr21 26561952 26562031 -18345539 + AluSc SINE Alu 219 297 -12 1491 219 43 19 chr21 26563090 26563465 -18344105 + MLT1B LTR MaLR 3 386 -4 330 273 47 16 chr21 26563747 26563875 -18343695 - L1MC4 LINE L1 -1 8041 7910 268 270 22 11 chr21 26563930 26564019 -18343551 - L1MC4 LINE L1 -148 7894 7805 423 141 0 0 chr21 26565668 26565746 -18341824 + (TA)n Simple_repeat Simple_repeat 1 78 0 1563 183 10 14 chr21 26565760 26566050 -18341520 + AluJo SINE Alu 11 299 -13 21 57 0 0 chr21 26567210 26567245 -18340325 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 26567331 26567353 -18340217 + AT_rich Low_complexity Low_complexity 1 22 0 282 29 0 0 chr21 26568074 26568109 -18339461 + (TA)n Simple_repeat Simple_repeat 2 36 0 2261 103 0 3 chr21 26572619 26572920 -18334650 - AluY SINE Alu -11 300 1 1747 126 73 65 chr21 26574347 26574554 -18333016 - THE1C LTR MaLR 0 375 162 2574 118 0 0 chr21 26574554 26574918 -18332652 + THE1B LTR MaLR 1 364 0 1747 126 73 65 chr21 26574918 26575082 -18332488 - THE1C LTR MaLR -213 162 1 1892 135 3 49 chr21 26575205 26575530 -18332040 + AluSx SINE Alu 1 310 -2 326 319 44 59 chr21 26576799 26577003 -18330567 + L3b LINE CR1 1201 1401 -182 1955 137 27 0 chr21 26578477 26578769 -18328801 + AluSx SINE Alu 1 300 -12 523 169 8 52 chr21 26578829 26579080 -18328490 + CT-rich Low_complexity Low_complexity 1 239 0 2068 117 0 0 chr21 26579380 26579663 -18327907 - AluY SINE Alu -28 283 1 369 289 94 50 chr21 26580410 26580590 -18326980 - L2 LINE L2 -956 2358 2171 591 290 71 95 chr21 26581769 26582116 -18325454 - MLT1G3 LTR MaLR -213 317 6 258 313 0 0 chr21 26582455 26582522 -18325048 + CT-rich Low_complexity Low_complexity 3 69 0 207 357 163 0 chr21 26583610 26583708 -18323862 - MIR SINE MIR -78 130 17 1540 37 0 0 chr21 26584702 26584892 -18322678 - L1P LINE L1 -1703 4443 4254 2998 27 40 11 chr21 26584892 26585250 -18322320 + L1PA3 LINE L1 5768 6151 -4 201 39 0 0 chr21 26585254 26585280 -18322290 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr21 26585913 26585945 -18321625 + AT_rich Low_complexity Low_complexity 1 32 0 238 226 34 34 chr21 26586135 26586281 -18321289 + (TA)n Simple_repeat Simple_repeat 1 146 0 852 88 0 0 chr21 26586725 26586838 -18320732 - L1PA13 LINE L1 -228 5935 5823 1368 111 5 0 chr21 26586838 26587053 -18320517 + L1PA13 LINE L1 5947 6163 0 297 0 0 0 chr21 26588211 26588244 -18319326 + (TG)n Simple_repeat Simple_repeat 2 34 0 686 269 6 6 chr21 26588925 26589092 -18318478 - MER5B DNA MER1_type -4 174 8 630 276 145 0 chr21 26589286 26589514 -18318056 + MIR SINE MIR 2 262 0 23 0 0 0 chr21 26589959 26589982 -18317588 + AT_rich Low_complexity Low_complexity 1 23 0 222 163 0 23 chr21 26590271 26590314 -18317256 + (TTTAA)n Simple_repeat Simple_repeat 5 46 0 434 248 132 0 chr21 26590389 26590518 -18317052 - MER58B DNA MER1_type -1 340 195 930 249 48 31 chr21 26590519 26590808 -18316762 + MLT1D LTR MaLR 1 294 -211 5792 187 52 26 chr21 26590809 26592151 -18315419 - L1MB1 LINE L1 -47 6357 4940 618 219 30 0 chr21 26592151 26592320 -18315250 - L1MA7 LINE L1 0 6291 6118 5792 187 52 26 chr21 26592320 26593152 -18314418 - L1MB1 LINE L1 -1464 4940 4131 516 229 18 0 chr21 26593176 26593285 -18314285 - MLT1A1 LTR MaLR -4 370 260 * 643 146 228 0 chr21 26593282 26593405 -18314165 - MLT1A1 LTR MaLR -212 153 3 1637 205 69 6 chr21 26593407 26593768 -18313802 - L1MB1 LINE L1 -2282 4100 3717 268 108 45 27 chr21 26593770 26593881 -18313689 + (TA)n Simple_repeat Simple_repeat 1 113 0 398 55 49 68 chr21 26593898 26594061 -18313509 + (TA)n Simple_repeat Simple_repeat 1 160 0 258 210 30 54 chr21 26594126 26594293 -18313277 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 267 181 11 21 chr21 26594310 26594404 -18313166 + (TA)n Simple_repeat Simple_repeat 1 93 0 3714 247 47 62 chr21 26594410 26595722 -18311848 - L1MB1 LINE L1 -2819 3563 2234 387 0 0 0 chr21 26595722 26595765 -18311805 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2028 97 0 7 chr21 26595775 26596053 -18311517 - AluSq SINE Alu -35 278 3 3714 247 47 62 chr21 26596053 26596424 -18311146 - L1MB1 LINE L1 -4157 2225 1850 2093 131 3 0 chr21 26596424 26596729 -18310841 - AluSx SINE Alu -6 306 1 3714 247 47 62 chr21 26596729 26597302 -18310268 - L1MB1 LINE L1 -4532 1850 1263 220 211 0 0 chr21 26597302 26597340 -18310230 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 324 322 0 0 chr21 26597340 26597430 -18310140 + L1MC4 LINE L1 6614 6703 -1339 * 345 292 0 0 chr21 26597364 26597453 -18310117 - L1MC4 LINE L1 -1339 6703 6615 1128 128 0 0 chr21 26597465 26597644 -18309926 + (TA)n Simple_repeat Simple_repeat 2 180 0 2661 255 69 27 chr21 26597645 26598428 -18309142 - L1M3d LINE L1 -4649 1242 427 12078 182 48 44 chr21 26598558 26600071 -18307499 - L1MA3 LINE L1 0 7724 6219 216 97 0 0 chr21 26600071 26600102 -18307468 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1563 191 3 11 chr21 26600105 26600387 -18307183 - AluSx SINE Alu -30 282 3 12078 182 48 44 chr21 26600387 26602916 -18304654 - L1MA3 LINE L1 -1506 6218 3656 1862 148 20 3 chr21 26602916 26603221 -18304349 - AluSx SINE Alu 0 312 3 12078 182 48 44 chr21 26603221 26603642 -18303928 - L1MA3 LINE L1 -4068 3656 3238 28 29 0 0 chr21 26603671 26603706 -18303864 + AT_rich Low_complexity Low_complexity 1 35 0 9670 199 23 15 chr21 26603730 26606899 -18300671 - L1PB2 LINE L1 0 6208 3017 908 221 11 6 chr21 26606898 26607079 -18300491 - L1PB2 LINE L1 -6013 191 10 * 896 219 114 0 chr21 26607048 26607249 -18300321 - L1MA3 LINE L1 -5219 985 762 * 2659 75 0 55 chr21 26608131 26608530 -18299040 + MER51B LTR ERV1 1 377 0 1881 139 0 4 chr21 26608531 26608797 -18298773 + AluSx SINE Alu 32 296 -16 311 346 120 24 chr21 26609260 26609468 -18298102 + MIR SINE MIR 25 252 -10 191 227 0 0 chr21 26609481 26609525 -18298045 - MIR SINE MIR -97 165 122 227 175 0 0 chr21 26609546 26609586 -18297984 - L2 LINE L2 -5 3267 3228 1182 330 126 33 chr21 26609647 26610847 -18296723 - L2 LINE L2 -141 3172 1851 310 339 68 10 chr21 26611209 26611401 -18296169 - L1MC4a LINE L1 -1880 5928 5726 381 275 68 30 chr21 26611454 26611690 -18295880 - L1ME LINE L1 -357 5764 5520 219 312 91 0 chr21 26613083 26613160 -18294410 - L2 LINE L2 -5 3267 3184 226 296 68 86 chr21 26613191 26613353 -18294217 - MIR SINE MIR -89 173 15 335 130 0 14 chr21 26613486 26613555 -18294015 + (TG)n Simple_repeat Simple_repeat 1 68 0 430 296 214 10 chr21 26613736 26613942 -18293628 + MIR SINE MIR 1 248 -14 1532 107 52 0 chr21 26614527 26614798 -18292772 + L1MA9 LINE L1 6028 6312 0 1894 290 68 31 chr21 26615645 26616421 -18291149 - L2 LINE L2 -896 2418 1614 329 329 98 20 chr21 26616433 26616728 -18290842 - L2 LINE L2 -820 2494 2177 287 244 146 41 chr21 26616893 26617016 -18290554 - MIR3 SINE MIR -64 144 9 204 186 0 47 chr21 26617171 26617214 -18290356 + MER5A DNA MER1_type 127 167 -22 195 304 0 43 chr21 26617172 26617241 -18290329 - MER5A DNA MER1_type -116 73 8 * 915 149 24 48 chr21 26618190 26618398 -18289172 - L1MA3 LINE L1 -180 6125 5923 779 177 0 0 chr21 26618398 26618527 -18289043 + L1MA3 LINE L1 6159 6305 0 306 0 0 0 chr21 26619348 26619382 -18288188 + (TG)n Simple_repeat Simple_repeat 1 34 0 292 179 12 12 chr21 26619713 26619797 -18287773 + CT-rich Low_complexity Low_complexity 2 85 0 1144 235 184 33 chr21 26620234 26620664 -18286906 - MLT1D LTR MaLR -8 497 3 2021 135 10 7 chr21 26620693 26620997 -18286573 - AluSx SINE Alu -7 305 1 248 290 43 0 chr21 26621299 26621368 -18286202 - MIR SINE MIR -32 230 159 535 216 32 16 chr21 26621484 26621609 -18285961 + MLT1L LTR MaLR 151 277 -338 1005 163 122 4 chr21 26621615 26621940 -18285630 - MLT1B LTR MaLR 0 390 1 2230 152 0 23 chr21 26622556 26622702 -18284868 + L1PA14 LINE L1 5766 5914 -247 2312 112 22 30 chr21 26622702 26623069 -18284501 + THE1B LTR MaLR 1 364 0 2230 152 0 23 chr21 26623069 26623317 -18284253 + L1PA14 LINE L1 5914 6151 -10 21 0 0 0 chr21 26623700 26623721 -18283849 + AT_rich Low_complexity Low_complexity 1 21 0 1051 276 110 36 chr21 26624261 26624678 -18282892 + MLT1H LTR MaLR 57 504 -45 2113 148 3 61 chr21 26624678 26625057 -18282513 + LTR18A LTR ERVL 1 357 0 2131 205 27 20 chr21 26625083 26625522 -18282048 + HERVL18 LTR ERVL 9 450 -5597 1974 176 44 30 chr21 26625520 26626107 -18281463 + HERVL18 LTR ERVL 1150 1809 -4238 * 1325 126 65 1 chr21 26626108 26626391 -18281179 + HERVL18 LTR ERVL 2120 2452 -3595 * 5287 169 20 2 chr21 26626390 26627235 -18280335 + HERVL18 LTR ERVL 2720 3579 -2468 2720 165 2 0 chr21 26627237 26627662 -18279908 + HERVL18 LTR ERVL 4394 4819 -1228 1444 197 0 16 chr21 26627749 26627998 -18279572 + LTR18A LTR ERVL 1 245 -112 750 206 12 8 chr21 26628020 26628181 -18279389 + LTR18A LTR ERVL 208 614 0 21 57 0 0 chr21 26629572 26629607 -18277963 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 26630491 26630519 -18277051 + AT_rich Low_complexity Low_complexity 1 28 0 1988 132 105 15 chr21 26630754 26631088 -18276482 + THE1B LTR MaLR 1 364 0 2587 95 20 0 chr21 26631101 26631458 -18276112 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr21 26632162 26632190 -18275380 + AT_rich Low_complexity Low_complexity 1 28 0 2394 57 3 13 chr21 26633586 26633900 -18273670 + AluY SINE Alu 1 311 0 27 29 0 0 chr21 26633937 26633971 -18273599 + AT_rich Low_complexity Low_complexity 1 34 0 1887 188 28 5 chr21 26634226 26634626 -18272944 + L1MA8 LINE L1 5880 6288 -3 33 25 0 0 chr21 26635062 26635102 -18272468 + AT_rich Low_complexity Low_complexity 1 40 0 2288 179 48 38 chr21 26635499 26635997 -18271573 - MLT1D LTR MaLR -2 503 1 1312 145 183 50 chr21 26636786 26637197 -18270373 - MLT1F1 LTR MaLR 0 567 212 2524 143 11 45 chr21 26637197 26637579 -18269991 + Tigger2a DNA MER2_type 1 394 -2314 2162 73 13 27 chr21 26637579 26637879 -18269691 + AluY SINE Alu 1 296 -15 189 0 0 0 chr21 26637879 26637900 -18269670 + (TA)n Simple_repeat Simple_repeat 1 21 0 2524 143 11 45 chr21 26637900 26637964 -18269606 + Tigger2a DNA MER2_type 392 433 -1 1312 145 183 50 chr21 26637964 26637986 -18269584 - MLT1F1 LTR MaLR -355 212 194 2046 153 40 8 chr21 26637986 26638339 -18269231 - THE1B LTR MaLR 0 364 1 1312 145 183 50 chr21 26638339 26638438 -18269132 - MLT1F1 LTR MaLR -373 194 5 2581 220 29 46 chr21 26638558 26639216 -18268354 - MER67B LTR ERV1 -4 657 11 354 247 0 54 chr21 26639210 26639303 -18268267 - MER67A LTR ERV1 -455 88 1 * 1363 191 21 56 chr21 26640315 26640514 -18267056 - L1MA9 LINE L1 -24 6288 6104 2200 93 34 0 chr21 26640514 26640805 -18266765 - AluSq SINE Alu -4 309 9 1363 191 21 56 chr21 26640805 26640945 -18266625 - L1MA9 LINE L1 -208 6104 5961 288 288 45 51 chr21 26640964 26641141 -18266429 + MIR SINE MIR 84 259 -3 201 376 141 24 chr21 26642478 26642776 -18264794 + L2 LINE L2 2935 3267 -5 22 0 0 0 chr21 26644004 26644026 -18263544 + AT_rich Low_complexity Low_complexity 1 22 0 2745 19 0 19 chr21 26645322 26645639 -18261931 - AluY SINE Alu 0 311 1 5688 121 39 18 chr21 26645684 26646013 -18261557 + L1MA3 LINE L1 5352 5673 -632 1579 214 0 7 chr21 26646013 26646308 -18261262 - AluJb SINE Alu -19 293 1 5688 121 39 18 chr21 26646308 26646913 -18260657 + L1MA3 LINE L1 5673 6305 0 183 42 0 0 chr21 26647636 26647660 -18259910 + (T)n Simple_repeat Simple_repeat 1 24 0 342 0 0 0 chr21 26648774 26648812 -18258758 + (TG)n Simple_repeat Simple_repeat 1 38 0 192 354 46 15 chr21 26649252 26649382 -18258188 - L2 LINE L2 -1000 2314 2181 207 372 111 14 chr21 26649565 26649925 -18257645 - L2 LINE L2 -1170 2144 1750 799 312 13 0 chr21 26650823 26651057 -18256513 - MIR SINE MIR -25 237 1 21 0 0 0 chr21 26651492 26651513 -18256057 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 26652122 26652155 -18255415 + AT_rich Low_complexity Low_complexity 1 33 0 262 272 184 39 chr21 26652410 26652513 -18255057 - L2 LINE L2 0 3313 3196 304 250 0 96 chr21 26652770 26652874 -18254696 - MER5B DNA MER1_type -82 96 3 230 388 41 8 chr21 26652876 26652997 -18254573 + L2 LINE L2 3148 3272 0 21 71 0 0 chr21 26653159 26653201 -18254369 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr21 26653815 26653847 -18253723 + AT_rich Low_complexity Low_complexity 1 32 0 1683 177 14 11 chr21 26656141 26656424 -18251146 - AluJo SINE Alu -24 288 5 2166 152 22 0 chr21 26659856 26660212 -18247358 + THE1B LTR MaLR 1 364 0 2307 91 0 0 chr21 26660999 26661286 -18246284 - AluSg SINE Alu -23 287 1 790 227 71 4 chr21 26661742 26661980 -18245590 - MER58 DNA MER1_type -8 2412 2159 225 354 49 0 chr21 26661973 26662055 -18245515 - MER58 DNA MER1_type -252 89 4 * 1125 244 192 20 chr21 26663131 26663574 -18243996 - LTR40a LTR ERVL 0 519 1 2772 13 0 0 chr21 26663718 26664021 -18243549 - AluYa5 SINE Alu -8 303 1 435 269 125 0 chr21 26664181 26664341 -18243229 - MLT1J LTR MaLR -331 180 1 323 324 62 39 chr21 26664750 26664929 -18242641 + L1MEd LINE L1 1043 1225 -4894 24 0 0 0 chr21 26664964 26664988 -18242582 + AT_rich Low_complexity Low_complexity 1 24 0 264 214 58 71 chr21 26665261 26665415 -18242155 + L1ME4a LINE L1 5874 6025 -96 807 225 58 34 chr21 26665434 26665730 -18241840 + MER33 DNA MER1_type 1 292 -32 236 284 55 18 chr21 26665854 26665963 -18241607 - MLT1K LTR MaLR -161 427 315 2062 112 0 14 chr21 26666002 26666307 -18241263 - AluSx SINE Alu 0 301 1 198 0 0 0 chr21 26667636 26667658 -18239912 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1541 195 60 24 chr21 26668647 26669027 -18238543 - MSTD LTR MaLR -2 394 1 192 200 0 0 chr21 26669124 26669169 -18238401 + (TATG)n Simple_repeat Simple_repeat 4 48 0 989 149 6 0 chr21 26669518 26669693 -18237877 + (TA)n Simple_repeat Simple_repeat 1 176 0 842 21 0 0 chr21 26669695 26669791 -18237779 - L1PA5 LINE L1 -16 6138 6043 248 383 52 0 chr21 26672020 26672135 -18235435 - L2 LINE L2 -2 3270 3150 262 283 65 65 chr21 26672242 26672380 -18235190 - L2 LINE L2 -2 3270 3133 256 375 16 52 chr21 26672471 26672663 -18234907 - L2 LINE L2 -164 3108 2924 983 227 209 15 chr21 26674668 26674998 -18232572 + MSTD LTR MaLR 3 396 0 187 245 20 0 chr21 26675910 26675959 -18231611 - MIR3 SINE MIR -4 204 155 1559 114 91 117 chr21 26677235 26677620 -18229950 + THE1C LTR MaLR 1 375 0 446 334 132 6 chr21 26677887 26678122 -18229448 - MIR SINE MIR 0 262 9 604 240 0 28 chr21 26680860 26681039 -18226531 + MER5B DNA MER1_type 3 176 -2 276 240 8 107 chr21 26681131 26681252 -18226318 + MIR SINE MIR 79 187 -75 28 29 0 0 chr21 26681484 26681519 -18226051 + AT_rich Low_complexity Low_complexity 1 35 0 2184 115 20 3 chr21 26682176 26682481 -18225089 - AluSx SINE Alu -2 310 1 242 342 33 66 chr21 26682973 26683086 -18224484 - L2 LINE L2 -7 3265 3157 989 193 13 53 chr21 26683086 26683314 -18224256 - MER20 DNA MER1_type 0 219 1 242 342 33 66 chr21 26683314 26683352 -18224218 - L2 LINE L2 -115 3157 3119 262 329 36 100 chr21 26684225 26684474 -18223096 - L2 LINE L2 -177 3095 2863 316 270 60 10 chr21 26684478 26684578 -18222992 - MIR SINE MIR -2 260 156 285 155 0 0 chr21 26685913 26685971 -18221599 + (TG)n Simple_repeat Simple_repeat 2 59 0 525 308 25 46 chr21 26687271 26687508 -18220062 - LTR16A LTR ERVL -40 410 179 350 339 44 48 chr21 26687836 26688355 -18219215 - MERVL LTR ERVL -205 5280 4764 1229 267 34 11 chr21 26688537 26688893 -18218677 - MERVL LTR ERVL -2855 2141 1778 1383 229 49 111 chr21 26689382 26689932 -18217638 + LTR40a LTR ERVL 4 519 0 358 307 47 47 chr21 26690384 26690576 -18216994 - LTR16C LTR ERVL 0 491 300 507 311 116 13 chr21 26691113 26691338 -18216232 + MIR SINE MIR 5 252 -10 2102 121 93 9 chr21 26691666 26691998 -18215572 + THE1B LTR MaLR 3 362 -2 493 289 121 80 chr21 26692004 26692391 -18215179 + L2 LINE L2 2869 3271 -1 228 233 44 33 chr21 26693227 26693317 -18214253 + MER5A DNA MER1_type 97 187 -2 21 36 0 0 chr21 26694636 26694664 -18212906 + AT_rich Low_complexity Low_complexity 1 28 0 1884 118 8 0 chr21 26694814 26695115 -18212455 + AluSx SINE Alu 17 319 0 2269 98 7 0 chr21 26696191 26696486 -18211084 - AluSg SINE Alu -13 297 1 321 250 85 115 chr21 26697065 26697405 -18210165 + L1MEc LINE L1 794 1123 -5273 400 264 48 106 chr21 26697422 26697649 -18209921 + L1ME3A LINE L1 5934 6147 -23 2147 160 17 3 chr21 26698413 26698763 -18208807 + MLT2D LTR ERVL 2 356 -58 745 203 33 52 chr21 26698781 26698993 -18208577 + L1MA9 LINE L1 6061 6268 -44 323 145 48 0 chr21 26699078 26699140 -18208430 + MLT2D LTR ERVL 456 520 0 510 280 64 33 chr21 26699283 26699561 -18208009 + MLT1H LTR MaLR 1 320 -229 445 193 68 0 chr21 26699677 26699765 -18207805 + LTR54 LTR ERV1 6 99 -411 480 260 97 66 chr21 26699821 26699896 -18207674 + MER57A LTR ERV1 132 203 -200 1727 176 17 7 chr21 26699896 26700198 -18207372 - AluJb SINE Alu -7 305 1 480 260 97 66 chr21 26700198 26700380 -18207190 + MER57A LTR ERV1 203 397 -6 7195 170 36 89 chr21 26701269 26703488 -18204082 + L1PA16 LINE L1 3116 5319 -847 2287 107 0 0 chr21 26703488 26703788 -18203782 + AluSq SINE Alu 1 300 -13 7195 170 36 89 chr21 26703788 26704585 -18202985 + L1PA16 LINE L1 5319 6156 -10 21 0 0 0 chr21 26704796 26704817 -18202753 + AT_rich Low_complexity Low_complexity 1 21 0 231 268 35 70 chr21 26705616 26705758 -18201812 + LTR50 LTR ERVL 51 187 -608 * 296 277 100 43 chr21 26705728 26706052 -18201518 + LTR33A LTR ERVL 130 507 -16 563 250 160 13 chr21 26706754 26706910 -18200660 + MER5A DNA MER1_type 10 188 -1 24 0 0 0 chr21 26707511 26707535 -18200035 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr21 26707904 26707953 -18199617 + AT_rich Low_complexity Low_complexity 1 49 0 205 200 0 22 chr21 26708120 26708165 -18199405 + GA-rich Low_complexity Low_complexity 2 45 0 1225 182 103 85 chr21 26708782 26709245 -18198325 + MER66A LTR ERV1 97 478 0 349 153 0 51 chr21 26709249 26709308 -18198262 + MER66A LTR ERV1 422 477 -1 649 278 0 54 chr21 26710125 26710348 -18197222 - L2 LINE L2 -2 3311 3101 1575 166 27 118 chr21 26711057 26711508 -18196062 + MLT2D LTR ERVL 1 410 -4 209 324 120 9 chr21 26711764 26711872 -18195698 + L2 LINE L2 3173 3292 -21 321 303 32 41 chr21 26713406 26713591 -18193979 - MIR SINE MIR -28 180 3 201 176 0 0 chr21 26713732 26713766 -18193804 + A-rich Low_complexity Low_complexity 1 34 0 1050 171 164 102 chr21 26713815 26714254 -18193316 + MLT1C LTR MaLR 2 467 0 212 212 333 8 chr21 26714295 26714427 -18193143 + MER5A DNA MER1_type 9 183 -6 2511 60 0 0 chr21 26716113 26716413 -18191157 + AluY SINE Alu 1 300 -11 201 329 12 24 chr21 26717408 26717493 -18190077 + L3 LINE CR1 1409 1492 -85 1768 156 0 0 chr21 26717678 26717947 -18189623 + AluSx SINE Alu 3 271 -41 243 0 0 0 chr21 26717947 26717974 -18189596 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 298 343 67 11 chr21 26718007 26718185 -18189385 - MIR3 SINE MIR -4 204 17 2059 130 13 10 chr21 26718408 26718715 -18188855 - AluSg SINE Alu -2 308 1 21 71 0 0 chr21 26719944 26719986 -18187584 + AT_rich Low_complexity Low_complexity 1 42 0 405 202 169 8 chr21 26720054 26720178 -18187392 - MER58B DNA MER1_type -2 339 196 261 180 213 0 chr21 26720926 26720987 -18186583 + L2 LINE L2 3240 3313 0 480 299 90 24 chr21 26721978 26722302 -18185268 - L1ME3A LINE L1 -12 6158 5809 397 224 24 46 chr21 26722302 26722471 -18185099 - MLT1C LTR MaLR 0 467 348 261 283 0 67 chr21 26722494 26722614 -18184956 + MIR SINE MIR 92 203 -59 2469 76 3 0 chr21 26722872 26723175 -18184395 + AluY SINE Alu 1 304 -7 265 276 20 63 chr21 26723187 26723338 -18184232 - MIR SINE MIR -67 141 50 1030 166 24 44 chr21 26723891 26724129 -18183441 + AluJo SINE Alu 85 318 0 194 267 0 0 chr21 26725424 26725469 -18182101 - L3b LINE CR1 -1 1582 1538 627 303 28 14 chr21 26726330 26726541 -18181029 + MER65C LTR ERV1 1 214 -247 1207 130 28 28 chr21 26726588 26726803 -18180767 - L1MA2 LINE L1 -4 6300 6086 963 201 31 24 chr21 26726819 26727073 -18180497 + MER65C LTR ERV1 200 455 -6 195 186 0 0 chr21 26727810 26727853 -18179717 + CT-rich Low_complexity Low_complexity 2 44 0 869 210 52 20 chr21 26727887 26728168 -18179402 + MER34 LTR ERV1 34 353 -189 2263 105 65 3 chr21 26728169 26728522 -18179048 - THE1C LTR MaLR 0 375 1 348 230 103 69 chr21 26728524 26728698 -18178872 + MER65C-int LTR ERV1 1590 1769 -3102 279 238 70 107 chr21 26728698 26728718 -18178852 + LTR57-int LTR ERVL 722 741 -4602 403 73 29 0 chr21 26728718 26728786 -18178784 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 279 238 70 107 chr21 26728786 26728861 -18178709 + LTR57-int LTR ERVL 741 1081 -4262 422 211 0 0 chr21 26728861 26728965 -18178605 + MER65C-int LTR ERV1 1906 2009 -2862 231 214 31 51 chr21 26728977 26729075 -18178495 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 209 217 29 36 chr21 26729086 26729224 -18178346 + (TATG)n Simple_repeat Simple_repeat 2 138 0 361 145 0 43 chr21 26729225 26729268 -18178302 + MER65C-int LTR ERV1 3161 3201 -3130 2084 46 0 0 chr21 26729268 26729530 -18178040 - L1PA4 LINE L1 -5 6150 5889 361 145 0 43 chr21 26729530 26729555 -18178015 + MER65C-int LTR ERV1 3201 3226 -3105 802 168 56 5 chr21 26729655 26729852 -18177718 + MER65C-int LTR ERV1 2288 2494 -2377 295 255 54 13 chr21 26730015 26730164 -18177406 + MER65C-int LTR ERV1 1591 1745 -6375 350 342 13 22 chr21 26730296 26730521 -18177049 + MER65C-int LTR ERV1 2351 2573 -2550 1441 227 86 50 chr21 26731098 26732490 -18175080 + MER65C-int LTR ERV1 2480 5573 -1025 2082 240 48 23 chr21 26732604 26733079 -18174491 + MER65C-int LTR ERV1 3647 4349 -587 2010 9 0 5 chr21 26733079 26733303 -18174267 + AluYb8 SINE Alu 92 314 -4 2082 240 48 23 chr21 26733303 26733348 -18174222 + MER65C-int LTR ERV1 4349 4391 -545 800 319 93 34 chr21 26733422 26733918 -18173652 + MER65C-int LTR ERV1 4347 4871 0 1719 203 24 43 chr21 26733918 26734386 -18173184 + MER65C LTR ERV1 1 459 -2 241 252 24 24 chr21 26734454 26734581 -18172989 + (TA)n Simple_repeat Simple_repeat 2 128 0 30 27 0 0 chr21 26734628 26734665 -18172905 + AT_rich Low_complexity Low_complexity 1 37 0 2063 218 14 40 chr21 26735009 26735528 -18172042 + MLT1D LTR MaLR 1 505 0 2219 143 65 31 chr21 26735680 26736094 -18171476 - MSTA LTR MaLR 0 428 1 8902 183 14 21 chr21 26736094 26736216 -18171354 - MSTA-int LTR MaLR 0 1651 1530 1844 144 49 0 chr21 26736216 26736501 -18171069 + AluSq SINE Alu 1 299 -14 8902 183 14 21 chr21 26736501 26738040 -18169530 - MSTA-int LTR MaLR -121 1530 2 2257 148 55 33 chr21 26738042 26738461 -18169109 - MSTA LTR MaLR 0 428 1 210 262 36 60 chr21 26739406 26739490 -18168080 - MIR SINE MIR -79 129 48 202 225 127 0 chr21 26740505 26740576 -18166994 + MIR SINE MIR 60 139 -69 501 264 129 19 chr21 26740975 26741130 -18166440 + MER5B DNA MER1_type 1 172 -6 930 189 22 66 chr21 26741397 26741625 -18165945 - MER20 DNA MER1_type 0 219 2 198 0 0 0 chr21 26743901 26743923 -18163647 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr21 26744487 26744509 -18163061 + AT_rich Low_complexity Low_complexity 1 22 0 673 314 142 21 chr21 26745814 26745952 -18161618 + L3 LINE CR1 1175 1295 -282 279 79 0 0 chr21 26745952 26745990 -18161580 + (CA)n Simple_repeat Simple_repeat 2 39 0 673 314 142 21 chr21 26745990 26746189 -18161381 + L3 LINE CR1 1295 1553 -24 189 0 0 0 chr21 26748131 26748152 -18159418 + (TA)n Simple_repeat Simple_repeat 2 22 0 4311 201 44 47 chr21 26748212 26749289 -18158281 + MER45R DNA AcHobo 1 1073 -508 802 194 89 8 chr21 26749276 26749523 -18158047 + MER45R DNA AcHobo 1219 1485 -96 * 298 237 15 130 chr21 26749610 26749741 -18157829 - MER5A DNA MER1_type -25 164 49 396 223 0 21 chr21 26749742 26749836 -18157734 + MER45 DNA AcHobo 1488 1579 -2 209 308 39 13 chr21 26749862 26749940 -18157630 - MIR SINE MIR -64 144 65 3037 198 69 2 chr21 26750278 26750916 -18156654 + L1MB4 LINE L1 5500 6180 0 23 0 0 0 chr21 26750930 26750953 -18156617 + AT_rich Low_complexity Low_complexity 1 23 0 210 310 52 0 chr21 26751166 26751224 -18156346 - L3b LINE CR1 -1 1582 1522 1253 129 0 5 chr21 26751309 26751495 -18156075 - AluJ SINE Alu 0 312 128 371 297 36 58 chr21 26751497 26751635 -18155935 + MIR3 SINE MIR 60 160 -48 371 203 0 0 chr21 26751730 26751799 -18155771 - AluJ SINE Alu -180 122 54 504 247 165 13 chr21 26751862 26752020 -18155550 - MER5A DNA MER1_type 0 189 8 2231 137 31 0 chr21 26752197 26752548 -18155022 + THE1B LTR MaLR 1 362 -2 436 354 0 0 chr21 26752803 26752930 -18154640 - MIR3 SINE MIR -48 160 34 351 237 0 102 chr21 26753186 26753304 -18154266 - MIR SINE MIR -86 122 17 25 90 0 0 chr21 26754438 26754505 -18153065 + AT_rich Low_complexity Low_complexity 1 67 0 1500 180 43 66 chr21 26755328 26755751 -18151819 + Charlie1 DNA MER1_type 2343 2755 -6 1382 298 99 26 chr21 26756395 26756899 -18150671 + MLT1H LTR MaLR 6 546 -3 260 150 17 67 chr21 26757923 26757983 -18149587 + MLT1J1 LTR MaLR 1 57 -389 318 332 139 5 chr21 26757991 26758178 -18149392 + MLT1J1 LTR MaLR 235 446 0 1002 250 5 18 chr21 26758247 26758467 -18149103 - MER58A DNA MER1_type -6 218 2 284 217 28 66 chr21 26758858 26758964 -18148606 + MER67B LTR ERV1 20 121 -540 316 238 66 80 chr21 26759157 26759308 -18148262 + MER67A LTR ERV1 395 543 0 748 278 136 38 chr21 26759439 26759939 -18147631 - MLT1H LTR MaLR 0 549 1 4329 157 89 6 chr21 26761132 26761480 -18146090 - L1MC1 LINE L1 0 6613 6295 1881 93 45 14 chr21 26761480 26761771 -18145799 - L1MA1 LINE L1 -7 6295 5996 4329 157 89 6 chr21 26761771 26762289 -18145281 - L1MC1 LINE L1 -318 6295 5675 974 81 0 0 chr21 26762293 26762417 -18145153 - AluSg/x SINE Alu -12 300 177 6469 238 31 17 chr21 26762419 26764282 -18143288 - L1MC1 LINE L1 -755 5671 3782 1121 181 58 0 chr21 26764282 26764487 -18143083 - MSTB LTR MaLR 0 426 210 266 197 0 26 chr21 26764508 26764584 -18142986 + (TA)n Simple_repeat Simple_repeat 2 75 0 22 0 0 0 chr21 26764609 26764631 -18142939 + AT_rich Low_complexity Low_complexity 1 22 0 3654 221 52 21 chr21 26764634 26765752 -18141818 - L1MC1 LINE L1 -2730 3696 2544 302 133 0 0 chr21 26765763 26765808 -18141762 - MLT1B LTR MaLR 0 390 346 498 198 45 36 chr21 26765808 26765919 -18141651 - L1MC1 LINE L1 -5831 595 484 1211 224 47 23 chr21 26766074 26766147 -18141423 - MLT1E LTR MaLR -3 590 520 5254 76 21 34 chr21 26766147 26766923 -18140647 - MER4E LTR ERV1 0 766 1 1211 224 47 23 chr21 26766923 26767148 -18140422 - MLT1E LTR MaLR -73 520 285 191 382 29 0 chr21 26768590 26768692 -18138878 - L2 LINE L2 -2493 821 717 2611 53 0 0 chr21 26769461 26769765 -18137805 - AluY SINE Alu -7 304 1 470 56 0 28 chr21 26769865 26769936 -18137634 - L1PA16 LINE L1 -1 6165 6097 * 707 193 2 0 chr21 26769913 26770058 -18137512 - L1PA16 LINE L1 -79 6086 5940 227 191 0 21 chr21 26770045 26770092 -18137478 + L1P4 LINE L1 5851 5896 -270 * 984 191 34 5 chr21 26770226 26770435 -18137135 - L1PA16 LINE L1 0 6166 5952 2613 173 15 2 chr21 26770739 26771196 -18136374 + MLT1C LTR MaLR 2 464 -3 407 270 27 0 chr21 26771280 26771391 -18136179 + LTR67 LTR ERVL 425 538 -19 431 329 12 0 chr21 26771555 26771725 -18135845 + L1ME LINE L1 5482 5653 -468 231 136 0 62 chr21 26771750 26771831 -18135739 + (TA)n Simple_repeat Simple_repeat 2 77 0 346 311 105 7 chr21 26772171 26772328 -18135242 + MIR SINE MIR 2 179 -29 1725 174 27 9 chr21 26772434 26772767 -18134803 - L1MC1 LINE L1 0 6333 5995 321 118 0 0 chr21 26773200 26773251 -18134319 + L1MA5A LINE L1 6169 6219 -78 2083 90 4 0 chr21 26773251 26773517 -18134053 - AluSc SINE Alu -40 269 3 24 67 0 0 chr21 26773519 26773564 -18134006 + AT_rich Low_complexity Low_complexity 1 45 0 2364 85 13 0 chr21 26773663 26773970 -18133600 - AluSp SINE Alu -2 311 1 425 211 39 10 chr21 26773983 26774087 -18133483 + MER21B LTR ERV1 1 107 -756 344 219 27 14 chr21 26774084 26774157 -18133413 + MER21B LTR ERV1 19 92 -771 * 3463 223 39 20 chr21 26774157 26774937 -18132633 + MER21B LTR ERV1 43 836 -27 227 191 0 0 chr21 26775166 26775213 -18132357 - L1ME LINE L1 -688 5482 5436 1089 142 34 34 chr21 26775729 26775824 -18131746 - L1MA7 LINE L1 -5 6295 6202 2502 72 3 0 chr21 26775824 26776130 -18131440 - AluY SINE Alu -2 309 3 1089 142 34 34 chr21 26776130 26776371 -18131199 - L1MA7 LINE L1 -98 6202 5980 341 286 71 9 chr21 26776417 26776529 -18131041 + MIR SINE MIR 73 191 -71 183 355 65 19 chr21 26777091 26777198 -18130372 - L2 LINE L2 -215 3057 2946 181 348 108 48 chr21 26777339 26777738 -18129832 - L2 LINE L2 -498 2816 2394 992 291 119 52 chr21 26777836 26778457 -18129113 + MLT2F LTR ERVL 1 663 0 748 237 55 36 chr21 26778664 26778883 -18128687 - MER58A DNA MER1_type 0 224 2 194 262 19 0 chr21 26778954 26779013 -18128557 + MIR SINE MIR 14 75 -133 1121 269 145 60 chr21 26779065 26779582 -18127988 + MLT1G1 LTR MaLR 8 595 0 300 326 97 27 chr21 26780563 26780757 -18126813 + MIR SINE MIR 16 223 -39 294 379 35 24 chr21 26780826 26780995 -18126575 + L2 LINE L2 2993 3163 -109 397 333 28 14 chr21 26781542 26781686 -18125884 - MIR SINE MIR -1 261 116 1852 158 21 63 chr21 26782407 26782570 -18125000 - MLT1A1 LTR MaLR 0 365 197 1535 157 93 39 chr21 26782570 26782926 -18124644 + THE1C LTR MaLR 1 375 0 1852 158 21 63 chr21 26782926 26783143 -18124427 - MLT1A1 LTR MaLR -168 197 1 201 396 85 18 chr21 26783672 26783836 -18123734 + MIR SINE MIR 14 188 -74 2050 259 94 25 chr21 26783881 26784916 -18122654 + L1M4 LINE L1 3144 4249 -1897 209 146 0 49 chr21 26785128 26785169 -18122401 - L2 LINE L2 -88 3225 3187 1834 219 55 34 chr21 26785455 26785980 -18121590 - MER65-int LTR ERV1 -3933 938 403 23912 154 32 29 chr21 26785986 26789042 -18118528 + L1PA10 LINE L1 203 3248 -3235 2467 68 0 10 chr21 26789042 26789349 -18118221 + AluY SINE Alu 1 304 -7 23912 154 32 29 chr21 26789349 26792479 -18115091 + L1PA10 LINE L1 3248 6478 -5 7889 220 16 22 chr21 26792491 26794515 -18113055 + L1PA16 LINE L1 2176 4188 -1958 10344 37 1 153 chr21 26794515 26796150 -18111420 + SVA Other Other 1 1386 0 201 139 0 0 chr21 26796177 26796220 -18111350 + (A)n Simple_repeat Simple_repeat 1 43 0 5035 151 26 6 chr21 26796336 26797935 -18109635 + L1PA16 LINE L1 4178 5838 -328 1939 61 8 4 chr21 26797935 26798181 -18109389 + AluY SINE Alu 60 306 -5 5035 151 26 6 chr21 26798181 26798517 -18109053 + L1PA16 LINE L1 5838 6166 0 2102 218 110 83 chr21 26798529 26799688 -18107882 + MER65A-int LTR ERV1 2497 5094 -1237 251 95 0 203 chr21 26799808 26799882 -18107688 + MER65A-int LTR ERV1 5339 5397 -934 1922 230 62 11 chr21 26799888 26800322 -18107248 + MER65A-int LTR ERV1 3605 4060 -811 1842 231 53 11 chr21 26800319 26800774 -18106796 + MER65A-int LTR ERV1 4397 4870 -1 * 1995 135 69 64 chr21 26800778 26800813 -18106757 + MER65A LTR ERV1 5 38 -407 390 42 0 0 chr21 26800813 26800861 -18106709 + (CA)n Simple_repeat Simple_repeat 2 49 0 1995 135 69 64 chr21 26800861 26801052 -18106518 + MER65A LTR ERV1 38 227 -218 1989 78 0 23 chr21 26801052 26801309 -18106261 - AluSg SINE Alu -25 285 35 1995 135 69 64 chr21 26801309 26801518 -18106052 + MER65A LTR ERV1 227 443 -2 259 219 33 46 chr21 26802320 26802471 -18105099 + (TTATA)n Simple_repeat Simple_repeat 4 152 0 27 0 0 0 chr21 26804046 26804073 -18103497 + AT_rich Low_complexity Low_complexity 1 27 0 233 236 18 18 chr21 26804116 26804171 -18103399 - L2 LINE L2 -14 3258 3204 342 0 0 0 chr21 26804174 26804212 -18103358 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr21 26804367 26804389 -18103181 + AT_rich Low_complexity Low_complexity 1 22 0 329 322 67 77 chr21 26804804 26805192 -18102378 + L1M4 LINE L1 3876 4259 -1887 21 36 0 0 chr21 26806108 26806136 -18101434 + AT_rich Low_complexity Low_complexity 1 28 0 207 308 0 15 chr21 26806358 26806423 -18101147 - MIR SINE MIR -3 259 196 1390 168 196 91 chr21 26806495 26806935 -18100635 - MLT2B1 LTR ERVL -34 486 1 3024 225 70 26 chr21 26806957 26808052 -18099518 - L1ME2 LINE L1 -1 6163 5016 2150 129 0 3 chr21 26808052 26808355 -18099215 - AluSx SINE Alu -10 302 1 3024 225 70 26 chr21 26808355 26808396 -18099174 - L1ME2 LINE L1 -1148 5016 4978 719 139 104 12 chr21 26808963 26809136 -18098434 - MER53 DNA DNA 0 189 1 314 363 107 4 chr21 26809138 26809408 -18098162 + L2 LINE L2 2488 2785 -529 2609 185 24 10 chr21 26809690 26810188 -18097382 - LTR53 LTR ERVL -1 518 14 551 202 46 88 chr21 26810455 26810830 -18096740 + LTR37B LTR ERV1 113 463 -5 36 40 0 0 chr21 26810913 26810963 -18096607 + AT_rich Low_complexity Low_complexity 1 50 0 527 212 0 10 chr21 26812447 26812546 -18095024 - MER70A LTR ERVL 0 472 375 1027 202 16 143 chr21 26812585 26813139 -18094431 - MER70A LTR ERVL -101 371 3 1776 260 101 8 chr21 26814068 26814684 -18092886 + HsTC2a DNA Tc2 70 742 -2 1319 220 120 7 chr21 26815156 26815565 -18092005 + MER110A LTR ERV1 14 468 0 1161 259 107 53 chr21 26816254 26816424 -18091146 + L1MEd LINE L1 537 696 -5331 1952 108 0 0 chr21 26816424 26816674 -18090896 + AluSx SINE Alu 31 280 -32 342 0 0 0 chr21 26816674 26816712 -18090858 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1161 259 107 53 chr21 26816712 26817243 -18090327 + L1MEd LINE L1 695 1166 -4861 244 328 53 49 chr21 26817274 26817518 -18090052 + HAL1 LINE L1 2246 2490 -17 528 238 60 22 chr21 26817849 26818034 -18089536 + MER95 LTR ERV 240 431 0 * 1429 202 75 16 chr21 26818034 26818340 -18089230 - MLT1A1 LTR MaLR -41 324 1 21 0 0 0 chr21 26819034 26819055 -18088515 + AT_rich Low_complexity Low_complexity 1 21 0 2291 71 0 42 chr21 26820035 26820343 -18087227 + AluY SINE Alu 3 297 -14 3422 205 45 8 chr21 26820343 26821111 -18086459 + L1MC3 LINE L1 5821 6620 -1165 11317 130 12 16 chr21 26821111 26822897 -18084673 + Tigger4(Zombi) DNA MER2_type 2 1780 -951 5066 124 3 0 chr21 26822897 26823653 -18083917 - L1PA13 LINE L1 -9 6154 5397 4095 128 97 3 chr21 26823653 26824104 -18083466 + Tigger4(Zombi) DNA MER2_type 1771 2315 -416 189 107 0 0 chr21 26824104 26824132 -18083438 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4095 128 97 3 chr21 26824132 26824390 -18083180 + Tigger4(Zombi) DNA MER2_type 2315 2547 -184 1158 138 0 6 chr21 26824390 26824549 -18083021 + AluSg/x SINE Alu 131 288 -22 1154 129 27 0 chr21 26824554 26824740 -18082830 + Tigger4(Zombi) DNA MER2_type 2541 2731 0 5594 180 48 5 chr21 26824740 26825860 -18081710 + L1MC3 LINE L1 6618 7785 0 218 178 22 0 chr21 26825861 26825906 -18081664 - MIR SINE MIR -215 47 2 4832 98 21 11 chr21 26826379 26827105 -18080465 - L1MA2 LINE L1 0 6304 5572 2029 78 0 0 chr21 26827118 26827390 -18080180 - AluY SINE Alu 0 310 39 2004 78 96 7 chr21 26827392 26827662 -18079908 - AluY SINE Alu -17 294 1 215 420 45 22 chr21 26828419 26828643 -18078927 - L2 LINE L2 -118 3154 2926 2131 250 19 52 chr21 26829439 26830059 -18077511 + MER77 LTR ERV1 1 600 -5 2072 134 36 38 chr21 26830564 26830929 -18076641 - THE1B LTR MaLR 0 364 1 9922 107 6 0 chr21 26830929 26832268 -18075302 - THE1B-int LTR MaLR 0 1580 234 839 282 164 34 chr21 26832294 26832949 -18074621 + L2 LINE L2 2403 3178 -135 384 22 0 0 chr21 26832949 26832994 -18074576 + (TC)n Simple_repeat Simple_repeat 2 46 0 839 282 164 34 chr21 26832994 26833136 -18074434 + L2 LINE L2 3178 3300 -13 228 67 0 0 chr21 26833136 26833166 -18074404 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 183 255 1 20 chr21 26833574 26833678 -18073892 - L2 LINE L2 -4 3309 3216 33 0 0 0 chr21 26833726 26833759 -18073811 + AT_rich Low_complexity Low_complexity 1 33 0 535 254 91 17 chr21 26834412 26834644 -18072926 + LTR16A1 LTR ERVL 209 457 0 405 0 0 0 chr21 26834894 26834939 -18072631 + (TG)n Simple_repeat Simple_repeat 2 46 0 324 313 177 7 chr21 26835371 26835518 -18072052 - MIR3 SINE MIR -6 202 31 1501 66 0 5 chr21 26835573 26835769 -18071801 + L1PA6 LINE L1 5959 6153 -1 238 340 22 17 chr21 26835964 26836070 -18071500 - MIR SINE MIR -60 148 41 235 324 10 10 chr21 26836999 26837101 -18070469 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 189 74 0 0 chr21 26837352 26837379 -18070191 + (CA)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr21 26837578 26837601 -18069969 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 180 111 0 0 chr21 26837990 26838017 -18069553 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 335 346 58 0 chr21 26838034 26838138 -18069432 - L2 LINE L2 -27 3245 3136 2007 130 3 3 chr21 26838473 26838765 -18068805 + AluSx SINE Alu 1 292 -20 205 86 29 0 chr21 26838769 26838804 -18068766 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 381 296 61 30 chr21 26838962 26839094 -18068476 + L2 LINE L2 3136 3271 -1 1209 142 5 0 chr21 26839766 26839963 -18067607 + L1P5 LINE L1 3 200 -6663 10124 194 91 15 chr21 26839965 26842984 -18064586 + L1P5 LINE L1 636 4285 -2577 2040 123 0 14 chr21 26842984 26843277 -18064293 + AluSx SINE Alu 15 303 -9 10124 194 91 15 chr21 26843277 26844396 -18063174 + L1P5 LINE L1 4285 5317 -1545 247 153 17 85 chr21 26844377 26844419 -18063151 + L1P5 LINE L1 6453 6491 -376 * 471 73 0 0 chr21 26844419 26844487 -18063083 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 247 153 17 85 chr21 26844487 26844503 -18063067 + L1P5 LINE L1 6491 6507 -360 258 32 0 0 chr21 26844961 26844992 -18062578 + (T)n Simple_repeat Simple_repeat 1 31 0 210 323 46 0 chr21 26846246 26846311 -18061259 + L2 LINE L2 3023 3090 -223 280 268 8 8 chr21 26846638 26846765 -18060805 + CT-rich Low_complexity Low_complexity 2 128 0 683 288 120 10 chr21 26847211 26847763 -18059807 + Charlie7 DNA MER1_type 1 657 -1955 237 313 12 12 chr21 26847941 26848021 -18059549 - L3 LINE CR1 -160 1417 1338 322 368 108 0 chr21 26848049 26848253 -18059317 - L3 LINE CR1 -358 1219 994 * 555 300 127 55 chr21 26848231 26848744 -18058826 - L2 LINE L2 -2 3311 2764 1894 168 3 3 chr21 26849136 26849433 -18058137 - AluJb SINE Alu -15 297 1 1539 198 18 73 chr21 26850232 26850617 -18056953 + MLT1B LTR MaLR 2 467 0 1325 101 0 0 chr21 26851271 26851450 -18056120 - L1P LINE L1 -1881 4265 4087 6478 95 23 11 chr21 26851461 26852007 -18055563 - L1P LINE L1 -2342 3804 3239 2298 104 3 3 chr21 26852007 26852316 -18055254 - AluSc SINE Alu 0 309 1 6478 95 23 11 chr21 26852316 26852755 -18054815 - L1P LINE L1 -2907 3239 2807 390 103 0 0 chr21 26852755 26852813 -18054757 - L1P LINE L1 -3667 2479 2422 1332 167 108 68 chr21 26852821 26853247 -18054323 - LTR7 LTR ERV1 -7 443 1 1281 102 0 0 chr21 26853247 26853433 -18054137 - L1P LINE L1 -3721 2425 2240 7832 85 16 1 chr21 26853433 26855335 -18052235 + L1PA7 LINE L1 4249 6153 -1 293 329 12 0 chr21 26856702 26856787 -18050783 - MIR3 SINE MIR -15 193 108 1776 117 33 37 chr21 26856794 26857094 -18050476 + AluSx SINE Alu 11 309 -3 372 231 11 0 chr21 26857135 26857226 -18050344 + L1MEc LINE L1 1724 1815 -4581 * 654 239 97 86 chr21 26857222 26857766 -18049804 + L1ME2 LINE L1 1604 2153 -4243 * 2227 187 52 69 chr21 26857764 26857909 -18049661 + L1ME2 LINE L1 5250 5396 -837 615 231 8 0 chr21 26857909 26858039 -18049531 + FLAM_C SINE Alu 2 132 -1 2227 187 52 69 chr21 26858039 26858716 -18048854 + L1ME2 LINE L1 5396 6224 -9 2074 108 97 9 chr21 26858996 26859511 -18048059 + MER51A LTR ERV1 1 634 0 253 206 16 16 chr21 26859516 26859579 -18047991 + (TA)n Simple_repeat Simple_repeat 1 63 0 2325 94 0 7 chr21 26859801 26860099 -18047471 - AluSq SINE Alu -17 296 1 6377 32 0 0 chr21 26861533 26862285 -18045285 + L1PA4 LINE L1 5401 6152 -3 232 227 160 27 chr21 26862770 26862845 -18044725 - MER5A DNA MER1_type -37 152 68 21 0 0 0 chr21 26863175 26863196 -18044374 + AT_rich Low_complexity Low_complexity 1 21 0 334 260 210 0 chr21 26863571 26863671 -18043899 - MER5A DNA MER1_type 0 189 69 707 277 41 45 chr21 26865950 26866192 -18041378 + MIR SINE MIR 1 241 -21 1951 111 0 7 chr21 26866447 26866726 -18040844 - AluSg SINE Alu -12 298 22 441 235 203 48 chr21 26866937 26867124 -18040446 - MIR SINE MIR -27 235 20 926 214 35 0 chr21 26867125 26867326 -18040244 + MER3 DNA MER1_type 1 208 -1 354 318 94 90 chr21 26869422 26869721 -18037849 - L2 LINE L2 -41 3231 2932 742 278 64 51 chr21 26869897 26870365 -18037205 - MLT1H LTR MaLR -1 548 75 447 202 0 11 chr21 26871053 26871142 -18036428 + MER105 DNA DNA 116 203 -1 293 221 65 0 chr21 26873549 26873617 -18033953 + MLT1A2 LTR MaLR 1 73 -301 528 243 143 80 chr21 26873617 26874367 -18033203 - LTR1 LTR ERV1 0 826 28 246 111 180 3 chr21 26874419 26874492 -18033078 + Charlie8 DNA MER1_type 196 276 -2141 1799 192 31 6 chr21 26874538 26874744 -18032826 + MLT1A1 LTR MaLR 3 223 -142 1458 190 19 8 chr21 26874744 26875012 -18032558 + AluJo SINE Alu 1 271 -41 1799 192 31 6 chr21 26875012 26875159 -18032411 + MLT1A1 LTR MaLR 223 365 0 510 251 131 15 chr21 26875195 26875394 -18032176 - MLT1J2 LTR MaLR -125 325 104 1926 153 32 27 chr21 26875404 26875777 -18031793 - THE1C LTR MaLR 0 375 1 339 309 16 73 chr21 26876855 26876938 -18030632 + MER5A DNA MER1_type 7 93 -96 1927 188 37 0 chr21 26876938 26877290 -18030280 + MLT1A1 LTR MaLR 1 365 0 339 309 16 73 chr21 26877290 26877397 -18030173 + MER5A DNA MER1_type 93 186 -3 1109 295 80 23 chr21 26877847 26878410 -18029160 - MLT1G1 LTR MaLR 0 595 1 2177 87 0 78 chr21 26878549 26878881 -18028689 + AluSc SINE Alu 1 306 -3 503 330 28 44 chr21 26879719 26879901 -18027669 + L2 LINE L2 3092 3270 -2 426 384 11 0 chr21 26879916 26880093 -18027477 - MIR3 SINE MIR 0 208 30 2733 34 0 3 chr21 26880130 26880458 -18027112 - L1PA4 LINE L1 -1 6154 5828 849 292 70 27 chr21 26880759 26881132 -18026438 - L2 LINE L2 -1 3312 2924 34 24 0 0 chr21 26881193 26881234 -18026336 + AT_rich Low_complexity Low_complexity 1 41 0 225 300 75 94 chr21 26881388 26881460 -18026110 - L2 LINE L2 -635 2679 2607 2301 93 0 0 chr21 26881460 26881751 -18025819 + AluSg SINE Alu 1 291 -19 225 300 75 94 chr21 26881751 26882425 -18025145 - L2 LINE L2 -707 2607 1947 349 163 0 25 chr21 26883732 26883812 -18023758 + CT-rich Low_complexity Low_complexity 3 80 0 260 277 45 70 chr21 26883812 26884017 -18023553 + MLT1L LTR MaLR 227 520 -95 1087 197 56 95 chr21 26884153 26884603 -18022967 + MER66A LTR ERV1 99 478 0 424 326 147 18 chr21 26884611 26885024 -18022546 + L2 LINE L2 2731 3197 -116 510 276 59 18 chr21 26886874 26887044 -18020526 + MIR SINE MIR 12 188 -74 298 357 0 14 chr21 26887697 26887840 -18019730 - MLT2E LTR ERVL -454 174 34 345 248 12 56 chr21 26887906 26888067 -18019503 - ERVL-E LTR ERVL -14 5750 5597 381 322 127 10 chr21 26888135 26888340 -18019230 + MIR SINE MIR 21 249 -13 632 365 128 19 chr21 26890023 26890718 -18016852 - L3 LINE CR1 -588 989 219 1903 277 109 32 chr21 26891085 26892710 -18014860 - L1M4 LINE L1 -1415 4731 2982 21 57 0 0 chr21 26892742 26892777 -18014793 + AT_rich Low_complexity Low_complexity 1 35 0 192 125 0 0 chr21 26892893 26892925 -18014645 + (TA)n Simple_repeat Simple_repeat 2 33 0 993 190 14 28 chr21 26893041 26893252 -18014318 + MER3 DNA MER1_type 1 208 -1 576 211 198 4 chr21 26893278 26893520 -18014050 - LTR50 LTR ERVL -4 791 503 473 275 79 6 chr21 26893664 26893842 -18013728 - LTR50 LTR ERVL -580 215 25 2730 98 3 11 chr21 26893855 26894233 -18013337 + THE1C LTR MaLR 1 375 0 969 238 71 18 chr21 26894562 26894844 -18012726 - MER102b DNA MER1_type -44 297 1 22 0 0 0 chr21 26895942 26895964 -18011606 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr21 26896217 26896242 -18011328 + AT_rich Low_complexity Low_complexity 1 25 0 1483 171 53 47 chr21 26896340 26896639 -18010931 + AluJb SINE Alu 1 301 -11 333 109 0 0 chr21 26896675 26896730 -18010840 + (T)n Simple_repeat Simple_repeat 1 55 0 235 26 0 0 chr21 26896734 26896773 -18010797 - L1HS LINE L1 0 6155 6117 * 1098 36 0 0 chr21 26896765 26896905 -18010665 + L1HS LINE L1 5965 6104 -51 * 2635 10 0 0 chr21 26896902 26897209 -18010361 + L1P1 LINE L1 5464 5770 -385 277 314 189 6 chr21 26898322 26898491 -18009079 + MIR SINE MIR 26 225 -37 554 77 10 77 chr21 26898902 26899006 -18008564 + L1MA2 LINE L1 6208 6304 0 562 267 81 0 chr21 26899124 26899296 -18008274 + MIR SINE MIR 77 262 0 440 302 33 89 chr21 26899625 26900019 -18007551 - MLT1I LTR MaLR -25 384 13 451 278 32 30 chr21 26900109 26900285 -18007285 - MER5B DNA MER1_type -3 186 1 1943 153 24 0 chr21 26900422 26900716 -18006854 + AluSx SINE Alu 1 301 -11 435 256 119 12 chr21 26900741 26900901 -18006669 + MLT1H LTR MaLR 23 199 -350 257 258 0 0 chr21 26901112 26901178 -18006392 + MLT1H LTR MaLR 482 547 -2 1983 158 32 29 chr21 26901975 26902349 -18005221 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr21 26904134 26904156 -18003414 + AT_rich Low_complexity Low_complexity 1 22 0 677 219 15 14 chr21 26904305 26904583 -18002987 + GA-rich Low_complexity Low_complexity 1 278 0 4016 84 16 2 chr21 26905252 26905798 -18001772 + MER41A LTR ERV1 1 554 0 1785 197 37 6 chr21 26906020 26906370 -18001200 - MLT1A1 LTR MaLR -4 361 1 1966 135 41 3 chr21 26907461 26907802 -17999768 - MLT1B LTR MaLR 0 390 37 512 105 61 70 chr21 26907808 26907883 -17999687 - Ricksha DNA DNA -7 2847 2772 2146 142 18 6 chr21 26907883 26908221 -17999349 + MER61A LTR ERV1 2 343 0 512 105 61 70 chr21 26908221 26908259 -17999311 - Ricksha DNA DNA -82 2772 2735 41493 45 2 2 chr21 26908262 26914407 -17993163 + L1PA4 LINE L1 7 6149 -6 7495 145 52 15 chr21 26914415 26915853 -17991717 - Ricksha DNA DNA -65 3181 1690 595 203 0 0 chr21 26915908 26916026 -17991544 - Ricksha DNA DNA -1135 119 2 1027 155 53 15 chr21 26916241 26916447 -17991123 - MER67A LTR ERV1 0 543 330 483 135 85 21 chr21 26916485 26916663 -17990907 + Ricksha DNA DNA 2310 2522 -724 2535 162 45 32 chr21 26916967 26917497 -17990073 - MER67A LTR ERV1 0 543 7 2195 117 7 0 chr21 26917540 26917877 -17989693 - AluSq SINE Alu 0 313 1 276 264 227 0 chr21 26918617 26918727 -17988843 + MIR3 SINE MIR 26 160 -48 461 195 124 0 chr21 26919845 26919958 -17987612 + L2 LINE L2 3187 3313 0 709 210 14 0 chr21 26920256 26920399 -17987171 + MER58B DNA MER1_type 195 339 -2 1922 221 53 37 chr21 26920934 26921257 -17986313 + MLT1E2 LTR MaLR 3 334 -292 2261 138 28 6 chr21 26921257 26921613 -17985957 - THE1B LTR MaLR 0 364 1 1922 221 53 37 chr21 26921613 26921911 -17985659 + MLT1E2 LTR MaLR 334 626 0 1976 218 50 76 chr21 26922152 26922993 -17984577 - L1MC5 LINE L1 -450 7511 6693 198 222 0 22 chr21 26923506 26923551 -17984019 + MIR3 SINE MIR 160 203 -5 23 54 0 0 chr21 26923919 26923956 -17983614 + AT_rich Low_complexity Low_complexity 1 37 0 2513 165 28 8 chr21 26924014 26924516 -17983054 + L1MB7 LINE L1 5657 6168 -16 199 362 92 31 chr21 26925787 26926016 -17981554 + L2 LINE L2 2733 2975 -339 2434 59 0 23 chr21 26926054 26926358 -17981212 + AluY SINE Alu 1 297 -14 237 158 0 0 chr21 26926544 26926582 -17980988 - MLT1A2 LTR MaLR 0 374 337 684 139 9 9 chr21 26926582 26926697 -17980873 + MSTB1 LTR MaLR 1 115 -317 2271 109 71 0 chr21 26926708 26927048 -17980522 - THE1B LTR MaLR 0 364 1 1508 56 0 37 chr21 26927048 26927263 -17980307 - THE1B-int LTR MaLR 0 1580 1374 1830 146 36 47 chr21 26927263 26927626 -17979944 - THE1B LTR MaLR 0 364 6 8009 126 40 9 chr21 26927626 26928917 -17978653 - THE1B-int LTR MaLR -197 1383 54 1285 155 61 65 chr21 26928923 26929201 -17978369 + MSTB1 LTR MaLR 143 419 -13 1487 214 33 6 chr21 26929203 26929534 -17978036 - MLT1A1 LTR MaLR -25 340 1 496 288 96 35 chr21 26929554 26929752 -17977818 + MIR SINE MIR 22 231 -31 23 33 0 0 chr21 26929864 26929894 -17977676 + AT_rich Low_complexity Low_complexity 1 30 0 270 301 0 0 chr21 26930413 26930496 -17977074 + MARNA DNA Mariner 133 215 -371 825 232 6 0 chr21 26930547 26930728 -17976842 - MLT1A1 LTR MaLR 0 365 184 9711 190 7 4 chr21 26931720 26932891 -17974679 + L1PA15 LINE L1 3223 4390 -1775 432 37 0 0 chr21 26932891 26932945 -17974625 + (CA)n Simple_repeat Simple_repeat 1 54 0 9711 190 7 4 chr21 26932945 26934676 -17972894 + L1PA15 LINE L1 4390 6162 -3 189 0 0 0 chr21 26935902 26935923 -17971647 + (A)n Simple_repeat Simple_repeat 1 21 0 1861 202 55 55 chr21 26936948 26937453 -17970117 - MLT1D LTR MaLR 0 505 1 861 205 94 30 chr21 26938359 26938601 -17968969 - Charlie1 DNA MER1_type -1 2760 2494 1995 152 0 0 chr21 26938601 26938897 -17968673 - AluSx SINE Alu -13 299 4 861 205 94 30 chr21 26938897 26938951 -17968619 - Charlie1 DNA MER1_type -267 2494 2445 375 95 16 0 chr21 26939166 26939229 -17968341 + L1MA9 LINE L1 6227 6290 -22 184 340 87 0 chr21 26940079 26940182 -17967388 + L3 LINE CR1 1054 1165 -412 1531 191 57 14 chr21 26940240 26940590 -17966980 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr21 26942468 26942490 -17965080 + AT_rich Low_complexity Low_complexity 1 22 0 382 333 14 0 chr21 26942670 26942811 -17964759 + LTR16C LTR ERVL 74 216 -275 1411 196 16 16 chr21 26943121 26943443 -17964127 - MLT1A1 LTR MaLR -43 322 1 517 253 23 7 chr21 26943454 26943667 -17963903 + LTR16C LTR ERVL 231 485 -6 198 395 73 0 chr21 26943832 26943956 -17963614 - L2 LINE L2 -213 3059 2927 651 285 164 48 chr21 26944475 26945127 -17962443 + L2 LINE L2 2454 3171 -101 234 306 141 8 chr21 26945266 26945387 -17962183 - MIR SINE MIR -125 137 1 10837 198 23 12 chr21 26945996 26948825 -17958745 - L1PA16 LINE L1 -9 6157 3277 2311 107 0 0 chr21 26948825 26949124 -17958446 - AluSx SINE Alu -13 299 1 10837 198 23 12 chr21 26949124 26949946 -17957624 - L1PA16 LINE L1 -2889 3277 2466 2289 132 25 6 chr21 26950609 26950966 -17956604 + THE1B LTR MaLR 1 364 0 2378 225 91 4 chr21 26951173 26951720 -17955850 - MER82 DNA MER2_type -58 595 1 2304 97 0 0 chr21 26951795 26952084 -17955486 + AluSq SINE Alu 1 289 -24 472 201 77 41 chr21 26952351 26952472 -17955098 + MER33 DNA MER1_type 6 121 -2503 1975 136 3 0 chr21 26952472 26952758 -17954812 - AluJb SINE Alu -24 288 2 472 201 77 41 chr21 26952758 26952921 -17954649 + MER33 DNA MER1_type 121 363 0 535 185 116 138 chr21 26953018 26953245 -17954325 - MIR SINE MIR -25 237 15 366 23 0 0 chr21 26953245 26953288 -17954282 + (CA)n Simple_repeat Simple_repeat 1 43 0 2290 67 0 7 chr21 26953944 26954256 -17953314 + AluSp SINE Alu 1 310 0 23 0 0 0 chr21 26954348 26954371 -17953199 + AT_rich Low_complexity Low_complexity 1 23 0 1609 170 3 28 chr21 26954371 26954660 -17952910 - AluJo SINE Alu -30 282 1 190 293 71 30 chr21 26954757 26954856 -17952714 + MIR3 SINE MIR 2 104 -104 420 286 73 26 chr21 26954938 26955130 -17952440 + MIR SINE MIR 50 250 -12 208 227 0 0 chr21 26955140 26955184 -17952386 + MIR3 SINE MIR 154 197 -11 204 40 0 0 chr21 26955889 26955914 -17951656 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1764 154 4 11 chr21 26956114 26956394 -17951176 - AluSx SINE Alu 0 312 35 612 251 25 25 chr21 26956623 26956826 -17950744 - LTR16C LTR ERVL -2 489 287 1961 240 69 50 chr21 26957093 26957970 -17949600 - Charlie2 DNA MER1_type -3 2859 1960 1595 130 141 0 chr21 26957970 26958232 -17949338 + AluJb SINE Alu 1 299 -13 1961 240 69 50 chr21 26958232 26958344 -17949226 - Charlie2 DNA MER1_type -902 1960 1852 255 317 19 50 chr21 26958428 26958589 -17948981 - Charlie2 DNA MER1_type -2658 204 49 800 114 8 0 chr21 26959387 26959510 -17948060 + MLT1D LTR MaLR 382 505 0 1582 118 9 0 chr21 26960877 26961105 -17946465 + MER30 DNA MER1_type 1 230 0 1854 217 60 38 chr21 26961374 26961441 -17946129 - MLT1E LTR MaLR 0 593 529 1675 137 43 22 chr21 26961441 26961718 -17945852 + AluJb SINE Alu 2 284 -28 372 22 0 0 chr21 26961718 26961763 -17945807 + (CA)n Simple_repeat Simple_repeat 2 46 0 1854 217 60 38 chr21 26961763 26962228 -17945342 - MLT1E LTR MaLR -63 530 48 375 259 112 0 chr21 26962550 26962666 -17944904 - MIR SINE MIR -76 186 58 1610 60 0 0 chr21 26962914 26963114 -17944456 + L1PA3 LINE L1 5956 6155 0 270 212 30 30 chr21 26963669 26963735 -17943835 - L2 LINE L2 -27 3245 3180 2386 67 0 0 chr21 26964342 26964649 -17942921 + AluY SINE Alu 1 307 0 934 155 53 11 chr21 26965072 26965259 -17942311 - L1PA5 LINE L1 0 6154 5960 28 0 0 0 chr21 26965752 26965780 -17941790 + AT_rich Low_complexity Low_complexity 1 28 0 1253 264 73 3 chr21 26966161 26966491 -17941079 - MLT1H LTR MaLR 0 549 197 1764 238 11 8 chr21 26966491 26966869 -17940701 - MLT1E2 LTR MaLR 0 626 248 815 243 64 0 chr21 26967050 26967252 -17940318 - MLT1E2 LTR MaLR -382 272 58 645 258 76 25 chr21 26967275 26967473 -17940097 - MLT1H LTR MaLR -341 208 1 1980 109 7 31 chr21 26967818 26968112 -17939458 + AluSx SINE Alu 1 287 -25 312 70 0 0 chr21 26968441 26968484 -17939086 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 1766 178 0 0 chr21 26968484 26968765 -17938805 - AluSx SINE Alu -27 285 5 552 206 83 69 chr21 26970960 26971164 -17936406 + MER3 DNA MER1_type 3 209 0 * 886 193 24 0 chr21 26971006 26971172 -17936398 - MER3 DNA MER1_type 0 209 40 4756 57 0 25 chr21 26972727 26973327 -17934243 - L1PA13 LINE L1 0 6163 5579 1223 181 27 18 chr21 26973370 26973591 -17933979 + MER58A DNA MER1_type 2 224 0 419 149 230 11 chr21 26974548 26974635 -17932935 + U6 snRNA snRNA 1 106 -1 755 153 8 0 chr21 26974674 26974792 -17932778 - MLT1B LTR MaLR -8 382 264 218 175 0 35 chr21 26974909 26974966 -17932604 + GA-rich Low_complexity Low_complexity 2 56 0 2267 162 20 18 chr21 26975200 26975596 -17931974 + L1PA13 LINE L1 5760 6156 -7 26 64 0 0 chr21 26975596 26975643 -17931927 + AT_rich Low_complexity Low_complexity 1 47 0 182 349 12 12 chr21 26975969 26976055 -17931515 - MIR SINE MIR 0 262 177 463 273 47 7 chr21 26976770 26976920 -17930650 + MER115 DNA AcHobo 4 159 -534 228 254 24 103 chr21 26977543 26977669 -17929901 - MIR SINE MIR 0 262 147 432 342 120 37 chr21 26977777 26978592 -17928978 - L2 LINE L2 -58 3255 2373 182 348 0 14 chr21 26978633 26978702 -17928868 + MIR SINE MIR 82 149 -59 504 187 60 12 chr21 26978998 26979115 -17928455 + L1PA11 LINE L1 5774 5894 -260 1951 158 19 0 chr21 26979311 26979622 -17927948 + L1PA16 LINE L1 5843 6159 -7 241 345 24 0 chr21 26980460 26980544 -17927026 + L3 LINE CR1 1491 1576 -1 566 191 89 48 chr21 26980623 26980791 -17926779 - MIR SINE MIR -2 260 86 2107 138 0 7 chr21 26981761 26982065 -17925505 + AluSx SINE Alu 1 302 -10 235 366 0 0 chr21 26982068 26982150 -17925420 - MIR SINE MIR -81 127 46 2497 63 0 3 chr21 26982293 26982595 -17924975 + AluY SINE Alu 1 301 -10 1936 113 92 7 chr21 26983017 26983300 -17924270 - AluSp SINE Alu -6 307 1 185 330 21 11 chr21 26983964 26984058 -17923512 + MIR SINE MIR 16 110 -98 1863 139 0 0 chr21 26984453 26984719 -17922851 + AluSx SINE Alu 35 300 -12 322 332 40 104 chr21 26986068 26986442 -17921128 - L2 LINE L2 -4 3268 2919 203 241 86 17 chr21 26987038 26987096 -17920474 - L2 LINE L2 -7 3265 3204 322 288 178 20 chr21 26987885 26988031 -17919539 - MIR SINE MIR -59 203 35 22 0 0 0 chr21 26988598 26988620 -17918950 + AT_rich Low_complexity Low_complexity 1 22 0 776 234 7 0 chr21 26990403 26990557 -17917013 + MER45A DNA AcHobo 1 155 -23 3023 80 3 0 chr21 26990557 26990946 -17916624 + THE1B-int LTR MaLR 1189 1578 -2 2040 126 42 33 chr21 26990946 26991279 -17916291 + THE1B LTR MaLR 29 364 0 495 252 143 0 chr21 26991668 26991815 -17915755 - MER58A DNA MER1_type -6 218 51 451 303 91 4 chr21 26991826 26992057 -17915513 - L1MC4 LINE L1 -267 7775 7525 455 237 0 0 chr21 26992531 26992628 -17914942 + L1MC4 LINE L1 7818 7914 -128 23 0 0 0 chr21 26992709 26992732 -17914838 + AT_rich Low_complexity Low_complexity 1 23 0 233 317 0 0 chr21 26992732 26992792 -17914778 - MER58A DNA MER1_type -161 63 4 1173 206 61 29 chr21 26993913 26994242 -17913328 + MSTD LTR MaLR 1 396 0 274 275 0 66 chr21 26994488 26994529 -17913041 + MIR SINE MIR 65 98 -164 2611 136 64 12 chr21 26994529 26994934 -17912636 - MSTB LTR MaLR 0 426 1 274 275 0 66 chr21 26994934 26994983 -17912587 + MIR SINE MIR 98 149 -113 1025 278 109 40 chr21 26995152 26995548 -17912022 + LTR16C LTR ERVL 69 491 0 211 250 0 21 chr21 26995549 26995597 -17911973 - L2 LINE L2 -999 2315 2269 1843 226 113 70 chr21 26996289 26996819 -17910751 + MLT1E LTR MaLR 40 592 -1 651 107 2 6 chr21 26997174 26997288 -17910282 + L1PB2 LINE L1 5364 5475 -676 3075 61 0 0 chr21 26997288 26997648 -17909922 + L1PA6 LINE L1 5782 6141 -13 4968 94 10 21 chr21 26997666 26998308 -17909262 + L1PB2 LINE L1 5460 6095 -56 2390 89 50 42 chr21 26998308 26998669 -17908901 + THE1B LTR MaLR 1 364 0 4968 94 10 21 chr21 26998669 26998726 -17908844 + L1PB2 LINE L1 6095 6151 0 1976 185 34 11 chr21 27000070 27000449 -17907121 + MLT1B LTR MaLR 1 388 -2 2379 156 46 0 chr21 27001823 27002195 -17905375 + MSTD LTR MaLR 1 389 -7 496 238 254 16 chr21 27002380 27002565 -17905005 - MIR SINE MIR -13 249 21 836 198 26 97 chr21 27002696 27002923 -17904647 + MER20 DNA MER1_type 6 216 -3 529 354 11 0 chr21 27005364 27005545 -17902025 + MIR3 SINE MIR 25 207 -1 1872 173 7 0 chr21 27005652 27005953 -17901617 + AluJo SINE Alu 1 303 -9 227 286 0 14 chr21 27006454 27006524 -17901046 - MIR3 SINE MIR -23 185 117 524 319 165 32 chr21 27006657 27007335 -17900235 - L2 LINE L2 -940 2374 1607 2226 142 37 37 chr21 27007832 27008382 -17899188 - MLT2A2 LTR ERVL 0 554 1 974 287 81 20 chr21 27008542 27008988 -17898582 - MLT1L LTR MaLR -132 483 11 418 120 93 0 chr21 27009365 27009440 -17898130 - L1MA8 LINE L1 -5 6286 6205 3007 204 81 29 chr21 27009442 27010310 -17897260 - L1MD2 LINE L1 -322 6037 5121 3373 151 14 12 chr21 27010400 27010990 -17896580 + L1MA7 LINE L1 5588 6178 -113 2234 105 0 0 chr21 27011527 27011821 -17895749 - AluY SINE Alu -17 294 1 1144 60 0 0 chr21 27011821 27011955 -17895615 - AluY SINE Alu -177 134 1 2862 186 68 17 chr21 27012779 27013355 -17894215 - MER77 LTR ERV1 0 605 1 1040 111 12 23 chr21 27014026 27014198 -17893372 + L1MB8 LINE L1 5996 6165 -13 1718 135 46 7 chr21 27014360 27014536 -17893034 - MER46B DNA MER2_type -2495 236 168 2270 100 0 0 chr21 27014536 27014825 -17892745 - AluSx SINE Alu -19 293 5 1718 135 46 7 chr21 27014825 27014929 -17892641 - MER46B DNA MER2_type -2563 168 70 7151 125 109 103 chr21 27014929 27016614 -17890956 + pTR5 LTR ERV1 745 2438 0 290 227 136 0 chr21 27016617 27016683 -17890887 - MER46B DNA MER2_type -286 75 1 288 266 53 0 chr21 27016684 27016778 -17890792 + L1ME LINE L1 5543 5641 -480 358 302 52 0 chr21 27016939 27017055 -17890515 + MLT1H LTR MaLR 195 316 -233 286 144 3 0 chr21 27017107 27017165 -17890405 + MLT1H LTR MaLR 415 478 -77 196 355 182 9 chr21 27017363 27017473 -17890097 + L2 LINE L2 3143 3271 -1 187 259 278 37 chr21 27017461 27017569 -17890001 + MIR3 SINE MIR 10 143 -65 * 2145 122 14 3 chr21 27017733 27018028 -17889542 + AluSx SINE Alu 1 298 -14 3397 161 54 0 chr21 27018203 27019352 -17888218 + L1P5 LINE L1 4572 5791 -360 434 172 0 11 chr21 27019364 27019451 -17888119 + L1 LINE L1 4730 4815 -1331 186 167 0 0 chr21 27019458 27019494 -17888076 + (TA)n Simple_repeat Simple_repeat 2 37 0 301 310 0 0 chr21 27019494 27019581 -17887989 + L1MC4 LINE L1 6614 6700 -1342 198 103 0 0 chr21 27019583 27019612 -17887958 + (TA)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr21 27019624 27019649 -17887921 + (CA)n Simple_repeat Simple_repeat 2 26 0 2035 141 13 21 chr21 27019654 27020030 -17887540 + L1PB1 LINE L1 5776 6148 -3 1570 186 51 9 chr21 27020104 27020454 -17887116 + MLT1C LTR MaLR 51 415 -52 293 205 0 39 chr21 27020460 27020538 -17887032 + MER53 DNA DNA 21 95 -94 * 345 233 0 0 chr21 27020475 27020561 -17887009 - MER53 DNA DNA -22 167 82 207 0 0 0 chr21 27021218 27021241 -17886329 + (CTCA)n Simple_repeat Simple_repeat 1 23 0 196 298 0 0 chr21 27021931 27021988 -17885582 + L2 LINE L2 3257 3313 0 1707 52 0 0 chr21 27022128 27022338 -17885232 + L1PA3 LINE L1 5944 6153 -2 754 232 54 6 chr21 27022444 27022612 -17884958 + MER5B DNA MER1_type 1 176 -2 3334 127 9 71 chr21 27023115 27023775 -17883795 + MER41B LTR ERV1 17 635 0 386 143 29 0 chr21 27024225 27024295 -17883275 + MER5B DNA MER1_type 107 178 0 1125 209 72 83 chr21 27024937 27025407 -17882163 + MLT1C LTR MaLR 1 465 -2 233 337 20 10 chr21 27026570 27026671 -17880899 - MIR SINE MIR -87 175 74 189 362 64 11 chr21 27026830 27026924 -17880646 + L2 LINE L2 3174 3272 0 2050 117 0 16 chr21 27027477 27027785 -17879785 - AluSx SINE Alu -9 303 1 1697 178 0 18 chr21 27027929 27028215 -17879355 - AluJo SINE Alu -31 281 1 1446 194 0 60 chr21 27028659 27028974 -17878596 + AluJb SINE Alu 1 296 -16 575 271 18 6 chr21 27029675 27029845 -17877725 + MIR SINE MIR 78 249 -13 2499 111 28 14 chr21 27030468 27030827 -17876743 - THE1B LTR MaLR 0 364 1 330 233 67 42 chr21 27031822 27031942 -17875628 + L1MC4 LINE L1 6581 6703 -1339 259 250 0 0 chr21 27031944 27032004 -17875566 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 242 299 26 26 chr21 27032578 27032732 -17874838 + L1P LINE L1 4886 5039 -1107 429 272 155 35 chr21 27032781 27033071 -17874499 + L1MC4a LINE L1 5064 5388 -758 1440 254 79 36 chr21 27033117 27033785 -17873785 + L1MC4a LINE L1 5361 6057 -1751 2111 134 0 16 chr21 27033791 27034104 -17873466 + AluSx SINE Alu 1 308 -4 569 238 6 43 chr21 27034269 27034433 -17873137 - MER45A DNA AcHobo -3 175 18 1034 104 0 0 chr21 27035798 27035932 -17871638 + AluJo SINE Alu 1 134 -178 22 0 0 0 chr21 27035932 27035954 -17871616 + AT_rich Low_complexity Low_complexity 1 22 0 182 305 32 42 chr21 27036175 27036270 -17871300 - MIR SINE MIR -6 256 163 439 231 39 10 chr21 27036283 27036387 -17871183 - MER5A DNA MER1_type -27 162 56 205 325 65 24 chr21 27036437 27036560 -17871010 - MIR SINE MIR -131 131 4 805 198 57 0 chr21 27037756 27037933 -17869637 + MLT1C LTR MaLR 1 187 -280 766 239 67 28 chr21 27038065 27038320 -17869250 + MLT1C LTR MaLR 203 467 0 702 333 51 3 chr21 27038382 27038718 -17868852 + L2 LINE L2 2174 2525 -789 874 310 134 19 chr21 27038721 27039120 -17868450 - LTR16A LTR ERVL -5 445 1 1968 218 46 32 chr21 27039557 27040189 -17867381 - L1M4 LINE L1 -1335 4811 4171 345 217 17 43 chr21 27041589 27041704 -17865866 - LTR33A LTR ERVL -4 519 408 703 195 41 0 chr21 27042445 27042568 -17865002 + FLAM_C SINE Alu 1 128 -5 194 188 0 21 chr21 27042590 27042638 -17864932 + A-rich Low_complexity Low_complexity 2 48 0 740 149 30 6 chr21 27042659 27042827 -17864743 + GA-rich Low_complexity Low_complexity 1 172 0 5209 93 10 0 chr21 27043584 27044368 -17863202 - L1PA4 LINE L1 -2090 4056 3265 9435 67 10 2 chr21 27044368 27045298 -17862272 + L1PA4 LINE L1 4061 4982 -1173 2173 110 0 10 chr21 27045298 27045590 -17861980 + AluY SINE Alu 1 289 -22 9435 67 10 2 chr21 27045590 27046735 -17860835 + L1PA4 LINE L1 4982 6155 0 1671 159 57 42 chr21 27047194 27047578 -17859992 + MLT1B LTR MaLR 1 390 0 26 0 0 0 chr21 27047700 27047726 -17859844 + AT_rich Low_complexity Low_complexity 1 26 0 1580 176 3 43 chr21 27047733 27048034 -17859536 + AluJo SINE Alu 1 289 -23 808 293 61 39 chr21 27048055 27048722 -17858848 + L1MEd LINE L1 979 1746 -744 316 353 65 0 chr21 27049150 27049289 -17858281 + MIR SINE MIR 49 196 -66 2103 151 60 39 chr21 27049327 27049850 -17857720 + MLT2A2 LTR ERVL 1 554 0 2420 80 0 16 chr21 27050878 27051192 -17856378 - AluSc SINE Alu 0 309 1 366 216 21 21 chr21 27051443 27051540 -17856030 + MER34 LTR ERV1 1 97 -445 1373 204 165 16 chr21 27051596 27052086 -17855484 + LTR48B LTR ERV1 82 644 0 326 264 114 14 chr21 27052681 27052821 -17854749 + MIR SINE MIR 103 256 -6 246 62 0 0 chr21 27053917 27053949 -17853621 + (TA)n Simple_repeat Simple_repeat 2 33 0 391 267 85 51 chr21 27055232 27055408 -17852162 + MER5A DNA MER1_type 7 188 -1 548 216 54 30 chr21 27055418 27055541 -17852029 + MER5B DNA MER1_type 5 135 -43 279 79 0 0 chr21 27055541 27055579 -17851991 + (TTG)n Simple_repeat Simple_repeat 2 39 0 548 216 54 30 chr21 27055579 27055622 -17851948 + MER5B DNA MER1_type 135 175 -3 354 276 51 0 chr21 27056240 27056338 -17851232 - MER81 DNA DNA 0 114 12 1205 150 5 0 chr21 27056527 27056714 -17850856 - MER5A DNA MER1_type -1 188 1 402 180 120 0 chr21 27057104 27057204 -17850366 - MER81 DNA DNA -2 112 1 217 329 0 0 chr21 27058420 27058490 -17849080 - L2 LINE L2 -2 3311 3242 575 318 81 13 chr21 27058797 27059033 -17848537 - MIR SINE MIR -3 259 8 217 250 18 0 chr21 27059301 27059357 -17848213 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 272 304 22 11 chr21 27059379 27059471 -17848099 + MER69 DNA AcHobo 27 119 -1107 373 333 32 19 chr21 27060348 27060504 -17847066 - MER5A DNA MER1_type -2 187 30 1616 196 85 35 chr21 27060614 27060991 -17846579 + MSTD LTR MaLR 1 396 0 1803 138 154 16 chr21 27061519 27061890 -17845680 + MSTA LTR MaLR 1 422 -6 2257 109 3 0 chr21 27061941 27062243 -17845327 + AluY SINE Alu 1 303 -8 2202 119 3 3 chr21 27062507 27062843 -17844727 + AluSx SINE Alu 1 518 -94 1326 78 0 0 chr21 27062843 27063023 -17844547 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2202 119 3 3 chr21 27063023 27063119 -17844451 + AluSx SINE Alu 517 612 0 502 296 72 9 chr21 27064263 27064476 -17843094 - MIR SINE MIR -15 247 19 379 306 41 41 chr21 27065053 27065200 -17842370 + MIR SINE MIR 17 163 -99 540 215 74 103 chr21 27065200 27065482 -17842088 + MER77 LTR ERV1 1 272 -290 13179 206 29 15 chr21 27065492 27069597 -17837973 + L1PB1 LINE L1 6 4052 -2815 2484 84 0 0 chr21 27069597 27069907 -17837663 + AluY SINE Alu 1 310 -1 13179 206 29 15 chr21 27069907 27070002 -17837568 + L1PB1 LINE L1 4052 4144 -2723 2394 79 3 25 chr21 27070002 27070317 -17837253 + AluSp SINE Alu 1 308 -5 330 26 0 0 chr21 27070317 27070356 -17837214 + (TA)n Simple_repeat Simple_repeat 1 39 0 13179 206 29 15 chr21 27070356 27072342 -17835228 + L1PB1 LINE L1 4143 6507 -360 694 36 105 4 chr21 27072342 27072789 -17834781 + (TA)n Simple_repeat Simple_repeat 1 491 0 2119 141 21 16 chr21 27072789 27073165 -17834405 + L1PB1 LINE L1 6489 6866 -1 1259 220 23 16 chr21 27073169 27073473 -17834097 + MER68 LTR ERV1 257 562 0 200 368 0 0 chr21 27073473 27073549 -17834021 + MIR SINE MIR 159 234 -28 221 167 33 17 chr21 27073572 27073632 -17833938 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 602 265 149 8 chr21 27073918 27074167 -17833403 + MLT1L LTR MaLR 1 284 -331 873 134 7 36 chr21 27074528 27074801 -17832769 - THE1C LTR MaLR 0 375 36 483 322 105 15 chr21 27075884 27076222 -17831348 - L1MC/D LINE L1 -510 5656 5303 253 320 19 19 chr21 27076400 27076556 -17831014 - L1P LINE L1 -1088 5058 4903 722 326 68 23 chr21 27076612 27077127 -17830443 - L1MC/D LINE L1 -1329 4817 4280 5308 128 2 8 chr21 27077130 27077975 -17829595 - L1PA15 LINE L1 -1 6164 5325 5456 141 7 4 chr21 27077977 27079662 -17827908 - L1PA15 LINE L1 -5 6160 4457 423 345 114 15 chr21 27079677 27080089 -17827481 - L1MC/D LINE L1 -1866 4280 3828 5082 214 34 24 chr21 27080144 27081559 -17826011 + L1PA13 LINE L1 1046 2486 -4311 2626 27 0 0 chr21 27081559 27081852 -17825718 - AluY SINE Alu -2 309 17 5082 214 34 24 chr21 27081852 27082073 -17825497 + L1PA13 LINE L1 2486 2703 -4094 521 80 0 0 chr21 27082074 27082149 -17825421 - MLT2A2 LTR ERVL 0 453 379 26061 88 7 4 chr21 27082151 27085789 -17821781 - HERVL-A1 LTR ERVL -2002 3652 1 3091 60 17 95 chr21 27085789 27086271 -17821299 - MLT2A1 LTR ERVL 0 444 1 3873 213 23 15 chr21 27086277 27087345 -17820225 + L1PA13 LINE L1 2706 3781 -3016 2159 127 0 3 chr21 27087477 27087776 -17819794 + AluSx SINE Alu 1 298 -14 2036 241 60 29 chr21 27087833 27088414 -17819156 + L1PA12 LINE L1 4 602 -6979 499 285 112 81 chr21 27088456 27089035 -17818535 - L1MC/D LINE L1 -3222 2924 2328 478 155 10 10 chr21 27089887 27089990 -17817580 + GA-rich Low_complexity Low_complexity 2 104 0 400 196 49 0 chr21 27090121 27090223 -17817347 + FRAM SINE Alu 70 176 0 380 320 61 40 chr21 27090422 27090669 -17816901 - HAL1 LINE L1 -1028 1479 1228 574 75 0 0 chr21 27091322 27091402 -17816168 + HERVL-A1 LTR ERVL 5575 5654 0 2743 89 8 2 chr21 27091402 27091797 -17815773 + MLT2A1 LTR ERVL 1 397 -47 1229 139 16 1 chr21 27091816 27092038 -17815532 + ERVL-A1 LTR ERVL 264 471 -5183 * 6625 72 39 0 chr21 27092035 27092941 -17814629 + ERVL-A1 LTR ERVL 943 1883 -3771 * 8324 68 11 6 chr21 27092939 27093703 -17813867 + HERVL-A1 LTR ERVL 4526 5298 -356 2722 23 0 0 chr21 27093703 27094007 -17813563 + AluYb8 SINE Alu 2 305 -13 8324 68 11 6 chr21 27094007 27094366 -17813204 + HERVL-A1 LTR ERVL 5298 5654 0 3080 78 31 0 chr21 27094366 27094755 -17812815 + MLT2A1 LTR ERVL 1 405 -39 540 0 0 0 chr21 27094755 27094815 -17812755 + (TA)n Simple_repeat Simple_repeat 1 60 0 3080 78 31 0 chr21 27094815 27094848 -17812722 + MLT2A1 LTR ERVL 405 436 -8 2140 120 0 10 chr21 27095176 27095475 -17812095 - AluSx SINE Alu -16 296 1 431 307 41 75 chr21 27095831 27096150 -17811420 + L2 LINE L2 2175 2482 -832 745 75 45 8 chr21 27096153 27096287 -17811283 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 392 353 77 44 chr21 27096303 27096498 -17811072 + L2 LINE L2 2493 2680 -592 2083 144 0 3 chr21 27096498 27096811 -17810759 - AluSx SINE Alu 0 312 1 392 353 77 44 chr21 27096811 27097167 -17810403 + L2 LINE L2 2680 3061 -211 1058 193 0 128 chr21 27097368 27097674 -17809896 + AluY SINE Alu 4 270 -41 841 173 0 0 chr21 27097674 27097807 -17809763 + AluJo/FRAM SINE Alu 164 296 -16 503 171 0 11 chr21 27097848 27097936 -17809634 + AluSc SINE Alu 95 181 -128 1062 167 6 0 chr21 27097937 27098105 -17809465 + AluSg/x SINE Alu 140 308 -2 1085 245 126 17 chr21 27098148 27098626 -17808944 + L1ME LINE L1 5257 5786 -376 21 57 0 0 chr21 27098704 27098739 -17808831 + AT_rich Low_complexity Low_complexity 1 35 0 972 189 36 40 chr21 27098837 27099059 -17808511 - LTR40b LTR ERVL 0 462 242 1072 297 112 23 chr21 27099110 27099744 -17807826 - L1M4 LINE L1 -951 5195 4619 1872 158 0 7 chr21 27099744 27100041 -17807529 + AluJb SINE Alu 1 295 -17 1072 297 112 23 chr21 27100041 27100803 -17806767 - L1M4 LINE L1 -1527 4619 3652 296 216 80 23 chr21 27100885 27100973 -17806597 + MLT1J2 LTR MaLR 102 194 -256 311 148 13 0 chr21 27101458 27101523 -17806047 - L1MC2 LINE L1 0 7995 6266 757 171 11 63 chr21 27101551 27101726 -17805844 - L1MC2 LINE L1 -62 6282 6117 1842 142 4 4 chr21 27101748 27102022 -17805548 - AluSq SINE Alu -16 297 24 461 314 23 10 chr21 27102046 27102349 -17805221 - L1M4 LINE L1 -3240 2906 2600 2140 102 156 8 chr21 27102519 27102892 -17804678 - MSTA LTR MaLR 0 428 1 1264 231 57 21 chr21 27103041 27103427 -17804143 - MLT1C LTR MaLR -62 405 6 1800 169 161 12 chr21 27103450 27103865 -17803705 - MER61D LTR ERV1 0 501 25 1708 206 83 12 chr21 27103936 27104359 -17803211 - MLT2B1 LTR ERVL -67 453 1 17575 148 41 13 chr21 27104365 27107465 -17800105 - ERVL-B1 LTR ERVL -14 5750 2565 23 54 0 0 chr21 27107490 27107527 -17800043 + AT_rich Low_complexity Low_complexity 1 37 0 630 83 9 28 chr21 27108328 27108437 -17799133 + (GGGA)n Simple_repeat Simple_repeat 2 108 0 * 781 181 5 40 chr21 27108414 27108975 -17798595 + GA-rich Low_complexity Low_complexity 1 541 0 326 284 9 37 chr21 27109811 27109920 -17797650 + MIR SINE MIR 54 159 -103 30 27 0 0 chr21 27109949 27109986 -17797584 + AT_rich Low_complexity Low_complexity 1 37 0 208 117 83 0 chr21 27110252 27110312 -17797258 + (TA)n Simple_repeat Simple_repeat 1 65 0 1143 171 0 0 chr21 27110421 27110596 -17796974 - AluJb SINE Alu -4 308 134 2029 118 10 0 chr21 27110596 27110884 -17796686 - AluSx SINE Alu -21 291 1 25 31 0 0 chr21 27111168 27111200 -17796370 + AT_rich Low_complexity Low_complexity 1 32 0 2157 111 0 35 chr21 27111794 27112110 -17795460 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr21 27112110 27112132 -17795438 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr21 27112273 27112297 -17795273 + (A)n Simple_repeat Simple_repeat 1 24 0 779 323 58 24 chr21 27112504 27112966 -17794604 + MLT1K LTR MaLR 2 479 -109 1874 168 0 19 chr21 27112970 27113280 -17794290 - AluJb SINE Alu -6 306 3 253 194 0 48 chr21 27113285 27113347 -17794223 + MLT1K LTR MaLR 522 580 -8 236 280 76 0 chr21 27113843 27113961 -17793609 + L1ME LINE L1 5771 5897 -224 22 0 0 0 chr21 27114420 27114442 -17793128 + AT_rich Low_complexity Low_complexity 1 22 0 933 154 0 26 chr21 27115087 27115243 -17792327 - FRAM SINE Alu -10 156 5 446 143 0 0 chr21 27115988 27116065 -17791505 - Charlie5 DNA MER1_type -2516 96 20 21 57 0 0 chr21 27116184 27116219 -17791351 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 27117530 27117551 -17790019 + AT_rich Low_complexity Low_complexity 1 21 0 2102 110 0 10 chr21 27117562 27117862 -17789708 - AluSx SINE Alu -15 297 1 25 51 0 0 chr21 27118250 27118289 -17789281 + AT_rich Low_complexity Low_complexity 1 39 0 407 105 0 0 chr21 27118301 27118358 -17789212 - FRAM/FAM SINE Alu -94 82 26 2476 82 0 0 chr21 27119692 27119998 -17787572 - AluY SINE Alu -5 306 1 1743 185 22 8 chr21 27120699 27121055 -17786515 - L1 LINE L1 -2064 4082 3722 308 200 0 52 chr21 27121055 27121127 -17786443 - MER65B LTR ERV1 -422 109 44 369 0 0 0 chr21 27121127 27121168 -17786402 + (TG)n Simple_repeat Simple_repeat 2 42 0 308 200 0 52 chr21 27121168 27121210 -17786360 - MER65B LTR ERV1 -487 44 1 1890 184 3 0 chr21 27121243 27121553 -17786017 - AluJo SINE Alu -1 311 1 5976 155 8 18 chr21 27121675 27122810 -17784760 + L1MC1 LINE L1 5209 6333 0 2822 16 0 0 chr21 27122817 27123128 -17784442 + AluY SINE Alu 1 311 0 1005 173 4 40 chr21 27123133 27123359 -17784211 + L1MC1 LINE L1 6116 6333 0 24 32 0 0 chr21 27123407 27123438 -17784132 + AT_rich Low_complexity Low_complexity 1 31 0 201 176 0 0 chr21 27123478 27123512 -17784058 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1308 175 99 32 chr21 27125064 27125407 -17782163 + MLT1A2 LTR MaLR 1 366 -8 2000 144 8 35 chr21 27125414 27125666 -17781904 + MER47A DNA MER2_type 2 242 -2081 2599 48 0 6 chr21 27125666 27125977 -17781593 + AluY SINE Alu 1 309 -2 2000 144 8 35 chr21 27125977 27126099 -17781471 + MER47A DNA MER2_type 242 366 0 2218 140 3 20 chr21 27126842 27127185 -17780385 + MER1B DNA MER1_type 1 337 0 2127 164 55 57 chr21 27127311 27127800 -17779770 + MLT1D LTR MaLR 18 505 0 858 205 68 22 chr21 27128036 27128146 -17779424 + MER33 DNA MER1_type 29 132 -2453 1997 138 20 7 chr21 27128146 27128444 -17779126 - AluSx SINE Alu -9 303 2 858 205 68 22 chr21 27128444 27128611 -17778959 + MER33 DNA MER1_type 132 319 -5 349 239 128 0 chr21 27130318 27130427 -17777143 - Charlie6 DNA MER1_type -2 3498 3376 7370 203 119 21 chr21 27130457 27131404 -17776166 - Charlie6 DNA MER1_type -1233 2267 1414 2318 82 3 0 chr21 27131404 27131696 -17775874 - AluSc SINE Alu -16 293 1 7370 203 119 21 chr21 27131696 27132320 -17775250 - Charlie6 DNA MER1_type -2086 1414 853 2290 42 11 18 chr21 27132320 27132629 -17774941 + AluY SINE Alu 1 307 0 204 40 0 0 chr21 27132630 27132655 -17774915 + (TA)n Simple_repeat Simple_repeat 1 25 0 7370 203 119 21 chr21 27132655 27133130 -17774440 - Charlie6 DNA MER1_type -2646 854 16 1816 120 36 45 chr21 27133427 27133736 -17773834 - AluSc SINE Alu -3 306 1 676 184 24 8 chr21 27133892 27134017 -17773553 - LTR12 LTR ERV1 -229 485 359 243 300 10 0 chr21 27134017 27134117 -17773453 - LTR30 LTR ERV1 -98 624 524 1045 92 72 139 chr21 27134205 27134456 -17773114 - LTR12 LTR ERV1 -480 234 1 1757 193 3 7 chr21 27135651 27135957 -17771613 + AluSg SINE Alu 1 305 -5 220 239 0 0 chr21 27137411 27137457 -17770113 + (TA)n Simple_repeat Simple_repeat 2 47 0 239 309 60 0 chr21 27138306 27138390 -17769180 + MIR SINE MIR 54 142 -120 1147 184 103 55 chr21 27138398 27138746 -17768824 + MLT1A1 LTR MaLR 1 365 0 357 231 91 33 chr21 27138852 27138973 -17768597 - MIR SINE MIR -61 147 20 2061 129 0 7 chr21 27139095 27139406 -17768164 - AluSx SINE Alu 0 309 1 2237 112 3 0 chr21 27139512 27139817 -17767753 - AluSp SINE Alu -6 307 2 487 261 17 8 chr21 27140393 27140512 -17767058 + L2 LINE L2 3194 3313 0 690 167 8 8 chr21 27140570 27140690 -17766880 - FLAM_A SINE Alu -16 126 7 2284 119 0 0 chr21 27140710 27141012 -17766558 - AluSx SINE Alu -10 302 1 663 272 84 10 chr21 27141022 27141224 -17766346 - MIR SINE MIR -44 218 2 247 245 0 0 chr21 27143148 27143201 -17764369 + (TAG)n Simple_repeat Simple_repeat 2 54 0 326 218 436 0 chr21 27143211 27143344 -17764226 - MIR SINE MIR -13 249 59 302 250 21 10 chr21 27143346 27143442 -17764128 - L1M4 LINE L1 -2572 3574 3478 662 157 0 0 chr21 27143484 27143592 -17763978 - AluSx SINE Alu -21 291 184 900 158 0 0 chr21 27143592 27143725 -17763845 - AluSx SINE Alu -180 133 1 239 230 162 14 chr21 27143962 27144036 -17763534 + MIR SINE MIR 60 144 -64 775 263 20 34 chr21 27144155 27144449 -17763121 - L1M4 LINE L1 -3528 2618 2328 1517 209 25 19 chr21 27144449 27144812 -17762758 - MLT1A1 LTR MaLR 0 365 1 775 263 20 34 chr21 27144812 27144875 -17762695 - L1M4 LINE L1 -3818 2328 2266 511 174 87 0 chr21 27144894 27145009 -17762561 + MLT1B LTR MaLR 1 125 -265 1037 147 95 9 chr21 27145662 27145894 -17761676 - L1MA9 LINE L1 -43 6269 6018 1834 167 0 35 chr21 27145912 27146229 -17761341 - AluJo SINE Alu -6 306 1 561 226 119 6 chr21 27146275 27146306 -17761264 + MIR SINE MIR 66 92 -170 1688 173 28 3 chr21 27146306 27146595 -17760975 - AluJo SINE Alu -16 296 1 561 226 119 6 chr21 27146595 27146731 -17760839 + MIR SINE MIR 92 252 -10 222 138 11 103 chr21 27147639 27147726 -17759844 + A-rich Low_complexity Low_complexity 6 84 0 633 201 139 74 chr21 27148079 27148402 -17759168 + MER7A DNA MER2_type 1 342 -4 1745 138 33 33 chr21 27148819 27149124 -17758446 - AluSx SINE Alu -7 305 1 185 222 0 0 chr21 27149143 27149179 -17758391 - MIR3 SINE MIR -23 185 150 185 222 0 0 chr21 27149187 27149223 -17758347 - MIR3 SINE MIR -23 185 150 197 268 0 0 chr21 27149231 27149272 -17758298 - MIR3 SINE MIR -23 185 145 1056 192 0 0 chr21 27149774 27149946 -17757624 - FAM SINE Alu -3 172 1 285 146 42 0 chr21 27149951 27149999 -17757571 - Alu SINE Alu -9 293 244 471 274 8 0 chr21 27150216 27150340 -17757230 + MLT1F1 LTR MaLR 1 125 -442 21 36 0 0 chr21 27150502 27150530 -17757040 + AT_rich Low_complexity Low_complexity 1 28 0 406 197 157 22 chr21 27150559 27150737 -17756833 + L1M4 LINE L1 3788 3989 -2157 1808 210 107 56 chr21 27151456 27152196 -17755374 - Charlie2 DNA MER1_type -6 2856 2055 3508 75 36 21 chr21 27152196 27152729 -17754841 - L1MA2 LINE L1 0 6304 5764 1808 210 107 56 chr21 27152729 27152940 -17754630 - Charlie2 DNA MER1_type -807 2055 1856 441 232 87 27 chr21 27153028 27153213 -17754357 - Charlie2 DNA MER1_type -2542 240 45 631 101 0 10 chr21 27153799 27153898 -17753672 + MER4A LTR ERV1 1 98 -566 2484 109 33 10 chr21 27153898 27154293 -17753277 + MER4A LTR ERV1 261 664 0 424 265 102 35 chr21 27155313 27155735 -17751835 + L1ME LINE L1 1084 1640 -4890 1984 145 0 0 chr21 27155998 27156281 -17751289 + AluSx SINE Alu 4 286 -26 1859 146 0 11 chr21 27156331 27156611 -17750959 - AluJb SINE Alu -18 294 18 446 240 150 9 chr21 27156728 27156888 -17750682 + L1ME LINE L1 2430 2640 -3938 6814 57 23 0 chr21 27156931 27158280 -17749290 + L1PA8 LINE L1 4801 6172 0 315 284 89 42 chr21 27158309 27158499 -17749071 + L1ME LINE L1 5416 5614 -926 374 320 78 59 chr21 27158526 27158848 -17748722 + L1ME LINE L1 5689 6003 -553 216 0 0 0 chr21 27158848 27158872 -17748698 + (TA)n Simple_repeat Simple_repeat 1 24 0 1774 93 133 25 chr21 27158875 27159154 -17748416 - AluSx SINE Alu -3 309 1 374 320 78 59 chr21 27159154 27159302 -17748268 + L1ME LINE L1 6004 6172 -384 23 86 0 0 chr21 27159597 27159655 -17747915 + AT_rich Low_complexity Low_complexity 1 58 0 333 82 0 0 chr21 27162432 27162481 -17745089 + (TG)n Simple_repeat Simple_repeat 2 50 0 2091 106 14 7 chr21 27163092 27163384 -17744186 + AluSq SINE Alu 1 294 -19 2437 77 3 0 chr21 27165050 27165348 -17742222 - AluSp SINE Alu -14 299 1 225 291 79 63 chr21 27165544 27165671 -17741899 + L2 LINE L2 3185 3313 0 1776 136 166 0 chr21 27165696 27165994 -17741576 + MSTA LTR MaLR 1 373 -55 897 133 0 15 chr21 27165994 27166129 -17741441 - FLAM_C SINE Alu 0 133 1 1776 136 166 0 chr21 27166129 27166197 -17741373 + MSTA LTR MaLR 373 428 0 621 111 11 0 chr21 27166279 27166369 -17741201 - AluJ/FLAM SINE Alu -221 91 1 2552 53 0 0 chr21 27166932 27167231 -17740339 + AluY SINE Alu 2 300 -11 324 203 0 14 chr21 27168502 27168576 -17738994 + Charlie8 DNA MER1_type 98 170 -2247 696 98 146 0 chr21 27168772 27168895 -17738675 - L1MA3 LINE L1 0 6305 6165 1194 234 102 44 chr21 27168997 27169020 -17738550 + L1MC4 LINE L1 7369 7389 -653 1434 132 35 0 chr21 27169020 27169247 -17738323 + MER46A DNA MER2_type 2 236 0 1194 234 102 44 chr21 27169247 27169860 -17737710 + L1MC4 LINE L1 7389 8042 0 2258 180 72 30 chr21 27169917 27170377 -17737193 + L1MB7 LINE L1 5616 6104 -80 1086 186 87 60 chr21 27170377 27170711 -17736859 - MER2 DNA MER2_type 0 344 2 2258 180 72 30 chr21 27170711 27170788 -17736782 + L1MB7 LINE L1 6104 6176 -8 21 0 0 0 chr21 27171393 27171414 -17736156 + AT_rich Low_complexity Low_complexity 1 21 0 639 140 0 0 chr21 27171562 27171662 -17735908 - AluJb SINE Alu -22 290 191 26 0 0 0 chr21 27172000 27172026 -17735544 + AT_rich Low_complexity Low_complexity 1 26 0 1894 140 38 0 chr21 27172178 27172470 -17735100 + AluJb SINE Alu 1 303 -9 230 224 15 45 chr21 27173877 27173944 -17733626 - L2 LINE L2 -78 3235 3171 319 325 76 25 chr21 27173963 27174120 -17733450 + L2 LINE L2 2887 3051 -221 23 54 0 0 chr21 27174591 27174628 -17732942 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 27174940 27174970 -17732600 + AT_rich Low_complexity Low_complexity 1 30 0 288 197 107 121 chr21 27176248 27176312 -17731258 - MIR SINE MIR -69 193 130 1949 151 3 0 chr21 27176312 27176596 -17730974 + AluSx SINE Alu 1 285 -27 222 37 0 0 chr21 27176601 27176628 -17730942 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 288 197 107 121 chr21 27176628 27176717 -17730853 - MIR SINE MIR -136 126 38 196 383 56 25 chr21 27178212 27178374 -17729196 + L2 LINE L2 2927 3093 -179 223 204 23 0 chr21 27178449 27178493 -17729077 + L2 LINE L2 3227 3271 -1 22 35 0 0 chr21 27178795 27178824 -17728746 + AT_rich Low_complexity Low_complexity 1 29 0 1910 144 3 7 chr21 27179284 27179583 -17727987 + AluSg SINE Alu 2 299 -11 1924 138 3 10 chr21 27179630 27179928 -17727642 - AluSq SINE Alu 0 313 18 673 293 110 26 chr21 27180102 27180484 -17727086 - L1ME LINE L1 -312 5809 5396 2147 140 58 14 chr21 27180720 27181135 -17726435 - L1MB2 LINE L1 -3 6168 5736 236 278 196 34 chr21 27181170 27181842 -17725728 - L1ME LINE L1 -1164 4982 4202 * 1569 174 107 75 chr21 27181826 27181890 -17725680 + L1MD2 LINE L1 5865 5926 -433 1962 139 10 3 chr21 27181890 27182185 -17725385 - AluJb SINE Alu -14 298 2 1569 174 107 75 chr21 27182185 27182597 -17724973 + L1MD2 LINE L1 5926 6356 -3 1677 178 7 0 chr21 27183062 27183363 -17724207 + AluJo SINE Alu 1 303 0 199 315 100 62 chr21 27185194 27185324 -17722246 + MIR SINE MIR 112 246 -16 4759 147 44 31 chr21 27185907 27186560 -17721010 + L1MA4 LINE L1 4746 5389 -911 710 169 24 0 chr21 27186560 27186684 -17720886 + FLAM_C SINE Alu 2 128 -5 4759 147 44 31 chr21 27186684 27187015 -17720555 + L1MA4 LINE L1 5389 5714 -586 2399 96 0 0 chr21 27187015 27187317 -17720253 + AluSg SINE Alu 1 302 -8 4759 147 44 31 chr21 27187317 27187779 -17719791 + L1MA4 LINE L1 5714 6289 -11 711 172 0 23 chr21 27189526 27189654 -17717916 - FLAM_A SINE Alu -5 137 13 268 115 0 49 chr21 27190274 27190335 -17717235 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 377 258 125 8 chr21 27190483 27190603 -17716967 - MIR SINE MIR -93 169 36 2020 130 33 0 chr21 27191457 27191757 -17715813 + AluSx SINE Alu 1 310 -2 229 372 59 75 chr21 27192164 27192535 -17715035 + L2 LINE L2 2818 3182 -90 468 329 27 7 chr21 27192989 27193135 -17714435 + MIR3 SINE MIR 44 192 -16 1432 129 0 31 chr21 27193171 27193396 -17714174 + AluSg/x SINE Alu 75 292 -20 14783 125 28 7 chr21 27193601 27195968 -17711602 + Tigger1 DNA MER2_type 1 2416 -2 1016 125 23 17 chr21 27196365 27196541 -17711029 + L1MB2 LINE L1 5995 6171 0 707 179 8 0 chr21 27197321 27197444 -17710126 - FLAM_A SINE Alu -9 124 1 4375 168 68 12 chr21 27198569 27199383 -17708187 + MER21B LTR ERV1 5 863 0 2256 96 24 0 chr21 27199986 27200279 -17707291 - AluSp SINE Alu -13 300 1 2377 75 0 3 chr21 27200311 27200605 -17706965 + AluSq SINE Alu 1 293 -20 24 0 0 0 chr21 27200715 27200739 -17706831 + AT_rich Low_complexity Low_complexity 1 24 0 739 173 47 0 chr21 27201223 27201350 -17706220 - FLAM_C SINE Alu 0 133 1 248 154 0 0 chr21 27201624 27201663 -17705907 + tRNA-Asn-AAC tRNA tRNA 1 39 -38 1703 205 15 9 chr21 27203356 27203687 -17703883 + MLT1A1 LTR MaLR 1 333 -32 289 175 0 184 chr21 27203694 27203808 -17703762 + MER2 DNA MER2_type 7 99 -246 225 176 0 59 chr21 27203808 27203859 -17703711 - MER2 DNA MER2_type -1 344 297 * 339 232 0 0 chr21 27203837 27203893 -17703677 + MER2 DNA MER2_type 290 345 0 230 143 0 0 chr21 27203893 27203927 -17703643 + MLT1A1 LTR MaLR 332 365 0 760 263 74 28 chr21 27203932 27204438 -17703132 + L1MEc LINE L1 974 1548 -4762 2050 150 3 0 chr21 27204438 27204744 -17702826 + AluSx SINE Alu 1 307 -5 760 263 74 28 chr21 27204744 27204773 -17702797 + L1MEc LINE L1 1548 1574 -4736 27 29 0 0 chr21 27204862 27204896 -17702674 + AT_rich Low_complexity Low_complexity 1 34 0 1231 205 128 82 chr21 27205066 27205739 -17701831 + L1M4 LINE L1 4634 5337 -809 626 294 30 67 chr21 27205786 27206147 -17701423 + L1MC/D LINE L1 76 423 -5647 492 214 0 10 chr21 27206147 27206245 -17701325 - AluJo SINE Alu -152 160 64 1027 234 60 33 chr21 27206246 27206695 -17700875 + L1MC/D LINE L1 436 896 -5174 763 134 0 0 chr21 27206687 27206821 -17700749 + L1ME2 LINE L1 5316 5449 -715 * 625 239 8 0 chr21 27206825 27206955 -17700615 - MER58B DNA MER1_type 0 341 211 1158 213 282 54 chr21 27207055 27207629 -17699941 + L1ME2 LINE L1 5450 6154 -10 2177 133 0 0 chr21 27207690 27207990 -17699580 + AluSx SINE Alu 1 300 -12 372 248 8 17 chr21 27208006 27208123 -17699447 + L1MC/D LINE L1 4454 4569 -1511 1549 194 14 17 chr21 27208133 27208427 -17699143 - AluJb SINE Alu -19 293 1 2345 103 0 0 chr21 27208464 27208766 -17698804 + AluSx SINE Alu 1 302 -10 1936 144 14 0 chr21 27208817 27209102 -17698468 + AluSx SINE Alu 1 289 -23 1498 109 5 9 chr21 27209102 27209313 -17698257 + AluSg/x SINE Alu 86 295 -17 378 305 132 81 chr21 27209334 27209411 -17698159 + L1MC/D LINE L1 4698 4770 -1310 1698 158 17 17 chr21 27209411 27209703 -17697867 - AluJb SINE Alu -19 293 2 378 305 132 81 chr21 27209703 27210232 -17697338 + L1MC/D LINE L1 4770 5335 -745 317 338 130 13 chr21 27210572 27210878 -17696692 + L1MC/D LINE L1 5459 5793 -305 2844 170 47 92 chr21 27210971 27211060 -17696510 - MER82 DNA MER2_type 0 653 562 2254 106 0 7 chr21 27211060 27211362 -17696208 + AluSq SINE Alu 1 300 -13 2844 170 47 92 chr21 27211362 27211764 -17695806 - MER82 DNA MER2_type -91 562 199 1362 30 0 12 chr21 27211764 27211931 -17695639 + L1PA3 LINE L1 5991 6155 0 2844 170 47 92 chr21 27211931 27212122 -17695448 - MER82 DNA MER2_type -454 199 1 26 30 0 0 chr21 27212676 27212709 -17694861 + AT_rich Low_complexity Low_complexity 1 33 0 2118 134 0 7 chr21 27213305 27213611 -17693959 + AluSx SINE Alu 1 304 -8 696 239 93 32 chr21 27214221 27214468 -17693102 - MIR SINE MIR 0 262 1 340 289 35 0 chr21 27214932 27215046 -17692524 - L2 LINE L2 -457 2857 2740 408 304 99 16 chr21 27215384 27215687 -17691883 + L1ME LINE L1 5492 5819 -302 21 0 0 0 chr21 27216465 27216486 -17691084 + AT_rich Low_complexity Low_complexity 1 21 0 2154 112 3 10 chr21 27216549 27216853 -17690717 + AluSx SINE Alu 1 302 -10 2272 113 0 3 chr21 27217030 27217332 -17690238 - AluSx SINE Alu -11 301 1 277 242 65 98 chr21 27218530 27218745 -17688825 - MER112 DNA MER1_type -7 253 46 1005 244 141 78 chr21 27218970 27219233 -17688337 + Charlie8 DNA MER1_type 1305 1550 -867 2397 84 3 3 chr21 27219233 27219541 -17688029 + AluSg SINE Alu 1 308 -2 1005 244 141 78 chr21 27219541 27219556 -17688014 + Charlie8 DNA MER1_type 1550 1563 -854 2063 144 0 0 chr21 27219556 27219854 -17687716 + AluSx SINE Alu 1 298 -14 1005 244 141 78 chr21 27219854 27220028 -17687542 + Charlie8 DNA MER1_type 1563 1725 -692 280 94 245 0 chr21 27220028 27220056 -17687514 - MER41A LTR ERV1 -88 466 446 2294 110 7 0 chr21 27220056 27220365 -17687205 + AluSq SINE Alu 1 311 -2 280 94 245 0 chr21 27220365 27220389 -17687181 - MER41A LTR ERV1 -108 446 401 1005 244 141 78 chr21 27220389 27220918 -17686652 + Charlie8 DNA MER1_type 1725 2414 -3 1591 136 0 33 chr21 27221097 27221340 -17686230 + AluSx SINE Alu 1 235 -77 187 291 35 23 chr21 27221393 27221479 -17686091 + L2 LINE L2 2931 3017 -255 355 255 57 43 chr21 27221681 27221822 -17685748 + MIR SINE MIR 52 194 -68 1137 240 114 41 chr21 27221826 27222289 -17685281 + L1MC4 LINE L1 7178 7674 -368 1148 184 43 0 chr21 27222319 27222526 -17685044 + AluSg/x SINE Alu 83 298 -12 779 185 13 25 chr21 27222531 27222688 -17684882 + AluJb SINE Alu 156 310 -2 772 235 68 51 chr21 27222688 27223024 -17684546 + L1MC4 LINE L1 7700 8041 -1 291 279 351 3 chr21 27223316 27223752 -17683818 - L2 LINE L2 -6 3307 2713 265 152 91 30 chr21 27224618 27224684 -17682886 + MER5A DNA MER1_type 36 105 -84 720 230 123 37 chr21 27224981 27225501 -17682069 + LTR50 LTR ERVL 123 650 -145 300 204 68 23 chr21 27225498 27225586 -17681984 + LTR33A LTR ERVL 426 517 -6 * 2066 111 10 3 chr21 27225602 27225890 -17681680 + AluSx SINE Alu 1 290 -22 339 294 108 9 chr21 27225895 27226126 -17681444 + L1MC4a LINE L1 5671 5924 -1884 248 91 23 0 chr21 27226148 27226192 -17681378 + (TA)n Simple_repeat Simple_repeat 1 45 0 2217 115 3 0 chr21 27226201 27226506 -17681064 + AluSx SINE Alu 1 306 -6 2215 127 0 0 chr21 27226685 27226985 -17680585 + AluSx SINE Alu 1 300 -12 2133 141 0 0 chr21 27227959 27228264 -17679306 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr21 27228364 27228386 -17679184 + AT_rich Low_complexity Low_complexity 1 22 0 2394 88 0 0 chr21 27228548 27228843 -17678727 + AluY SINE Alu 1 295 -16 349 118 0 0 chr21 27229628 27229679 -17677891 - MSTA LTR MaLR -377 51 1 2595 50 0 0 chr21 27229981 27230280 -17677290 + AluY SINE Alu 8 306 -5 529 353 109 30 chr21 27230411 27231370 -17676200 + L2 LINE L2 373 1407 -1907 4728 122 124 34 chr21 27231370 27232762 -17674808 + pTR5 LTR ERV1 748 2438 0 2306 88 0 3 chr21 27233185 27233479 -17674091 - AluSx SINE Alu -19 293 1 246 160 80 0 chr21 27233639 27233714 -17673856 + (TA)n Simple_repeat Simple_repeat 2 82 0 29 0 0 0 chr21 27234694 27234723 -17672847 + AT_rich Low_complexity Low_complexity 1 29 0 2007 92 11 25 chr21 27234723 27235007 -17672563 + AluSx SINE Alu 33 312 0 2164 124 3 3 chr21 27235267 27235573 -17671997 + AluSx SINE Alu 1 306 -6 2176 102 0 14 chr21 27236826 27237121 -17670449 + AluSx SINE Alu 1 291 -21 694 169 7 37 chr21 27238146 27238282 -17669288 - AluJo SINE Alu -176 136 5 766 258 157 23 chr21 27238768 27239074 -17668496 - MER7A DNA MER2_type -1 345 1 1673 179 14 3 chr21 27240470 27240755 -17666815 - AluJo SINE Alu -23 289 2 2519 66 0 3 chr21 27240764 27241065 -17666505 - AluY SINE Alu -11 300 1 676 296 33 29 chr21 27241303 27241610 -17665960 - L1MC4a LINE L1 -1940 6262 5955 1903 146 9 16 chr21 27241696 27242011 -17665559 + AluSq SINE Alu 1 313 0 5889 69 26 56 chr21 27242014 27242903 -17664667 + SVA Other Other 5 866 -520 1290 38 0 34 chr21 27242922 27243131 -17664439 + SVA Other Other 665 866 -520 6618 60 25 43 chr21 27243188 27244154 -17663416 + SVA Other Other 432 1379 -7 242 215 62 0 chr21 27244334 27244399 -17663171 - L1MC4a LINE L1 -1291 5249 5181 1260 114 0 6 chr21 27244419 27244586 -17662984 - FRAM SINE Alu -13 163 1 2631 46 0 0 chr21 27244779 27245082 -17662488 + AluY SINE Alu 1 303 -8 257 136 0 0 chr21 27245142 27245186 -17662384 - L1MB8 LINE L1 0 6178 6135 1457 190 3 31 chr21 27245388 27245677 -17661893 - MSTD LTR MaLR -4 392 112 267 213 53 0 chr21 27245691 27245766 -17661804 - L1MC4a LINE L1 -4964 1576 1498 517 152 30 0 chr21 27245771 27245870 -17661700 - MSTD LTR MaLR -294 102 1 2461 78 0 0 chr21 27245911 27246218 -17661352 + AluY SINE Alu 1 307 -4 1773 148 45 0 chr21 27246259 27246596 -17660974 - L1MDa LINE L1 -4505 2035 1684 2257 122 0 3 chr21 27246596 27246900 -17660670 - AluSg SINE Alu -7 303 1 2391 103 0 3 chr21 27246900 27247202 -17660368 - AluSq SINE Alu -12 301 1 25 51 0 0 chr21 27247488 27247527 -17660043 + AT_rich Low_complexity Low_complexity 1 39 0 2286 104 6 16 chr21 27247619 27247935 -17659635 - AluSp SINE Alu 0 313 1 600 251 109 6 chr21 27248117 27248292 -17659278 + MIR SINE MIR 28 220 -42 21 0 0 0 chr21 27248316 27248337 -17659233 + AT_rich Low_complexity Low_complexity 1 21 0 475 150 100 0 chr21 27248339 27248419 -17659151 - AluSg SINE Alu -21 291 204 962 89 0 0 chr21 27248419 27248542 -17659028 - AluSg SINE Alu -187 123 1 1030 291 203 18 chr21 27248573 27248700 -17658870 - L2 LINE L2 -9 3304 3202 2218 100 7 10 chr21 27248700 27249000 -17658570 + AluSx SINE Alu 3 301 -11 1030 291 203 18 chr21 27249000 27249964 -17657606 - L2 LINE L2 -111 3202 2025 817 144 0 0 chr21 27250080 27250198 -17657372 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr21 27250198 27250228 -17657342 + AT_rich Low_complexity Low_complexity 1 30 0 2481 74 0 3 chr21 27250890 27251202 -17656368 - AluSx SINE Alu -1 311 1 305 320 163 0 chr21 27251303 27251450 -17656120 - MER5A DNA MER1_type -1 188 18 937 191 29 0 chr21 27251952 27252125 -17655445 + MER20 DNA MER1_type 42 219 0 1568 206 97 21 chr21 27252280 27252725 -17654845 - L1ME2 LINE L1 -30 6134 5656 342 274 49 0 chr21 27252725 27252827 -17654743 - L2 LINE L2 -12 3301 3195 2516 88 0 0 chr21 27252890 27253196 -17654374 + AluSp SINE Alu 1 306 -7 1975 127 29 29 chr21 27253200 27253507 -17654063 + AluJb SINE Alu 1 307 -5 1381 166 40 43 chr21 27253630 27253931 -17653639 + AluJo SINE Alu 1 300 -12 1700 141 39 18 chr21 27254351 27254660 -17652910 + AluSx SINE Alu 1 312 0 2262 84 10 3 chr21 27254971 27255268 -17652302 - AluSq SINE Alu -12 301 3 1585 82 5 14 chr21 27255380 27255599 -17651971 + AluSg SINE Alu 1 217 -93 2458 64 3 0 chr21 27257548 27257846 -17649724 + AluSg SINE Alu 1 299 -11 881 128 0 15 chr21 27257918 27258051 -17649519 - FLAM_C SINE Alu 0 133 3 21 0 0 0 chr21 27258786 27258807 -17648763 + AT_rich Low_complexity Low_complexity 1 21 0 1960 139 3 20 chr21 27259495 27259798 -17647772 - AluSx SINE Alu -14 298 1 2284 107 3 0 chr21 27259807 27260106 -17647464 - AluSx SINE Alu -12 300 1 975 268 43 68 chr21 27260109 27260503 -17647067 - L1ME4a LINE L1 -295 5826 5445 2623 56 0 0 chr21 27260503 27260805 -17646765 + AluY SINE Alu 1 302 -9 975 268 43 68 chr21 27260805 27260898 -17646672 - L1ME4a LINE L1 -676 5445 5351 326 309 152 5 chr21 27261158 27261349 -17646221 + MIR SINE MIR 14 232 -30 284 248 135 50 chr21 27261479 27261620 -17645950 + L2 LINE L2 3160 3312 -1 924 260 136 20 chr21 27262259 27262605 -17644965 - LTR16A LTR ERVL -13 437 52 2071 144 3 3 chr21 27262811 27263110 -17644460 - AluSx SINE Alu -13 299 1 4031 186 29 47 chr21 27263131 27263601 -17643969 - L1MD2 LINE L1 -2 6357 5911 1915 166 0 0 chr21 27263601 27263903 -17643667 - AluJb SINE Alu -10 302 1 4031 186 29 47 chr21 27263903 27264376 -17643194 - L1MD2 LINE L1 -448 5911 5431 258 354 32 25 chr21 27265207 27265365 -17642205 - L2 LINE L2 -211 3061 2903 2328 88 0 28 chr21 27265669 27265987 -17641583 - AluSq SINE Alu -3 310 2 2354 69 7 36 chr21 27266751 27267054 -17640516 - AluSg SINE Alu -16 294 1 1577 88 4 22 chr21 27267093 27267321 -17640249 + AluY SINE Alu 88 311 0 2177 128 3 0 chr21 27268951 27269257 -17638313 - AluJb SINE Alu -5 307 1 235 286 164 37 chr21 27269345 27269534 -17638036 - L2 LINE L2 -97 3216 3004 36 23 0 0 chr21 27270577 27270620 -17636950 + AT_rich Low_complexity Low_complexity 1 43 0 635 339 32 8 chr21 27271432 27271680 -17635890 - MIR SINE MIR -1 261 8 28 29 0 0 chr21 27271927 27271962 -17635608 + AT_rich Low_complexity Low_complexity 1 35 0 763 221 74 0 chr21 27272420 27272610 -17634960 + MER3 DNA MER1_type 6 209 0 21 57 0 0 chr21 27274161 27274196 -17633374 + AT_rich Low_complexity Low_complexity 1 35 0 2099 113 0 27 chr21 27275305 27275605 -17631965 - AluSx SINE Alu -20 292 1 626 239 226 35 chr21 27275648 27275816 -17631754 - L1MC4a LINE L1 -1804 6004 5869 2178 123 3 3 chr21 27275816 27276118 -17631452 - AluSx SINE Alu -10 302 1 249 33 0 0 chr21 27276120 27276150 -17631420 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 626 239 226 35 chr21 27276150 27276354 -17631216 - L1MC4a LINE L1 -1939 5869 5557 483 254 17 22 chr21 27276367 27276548 -17631022 - L1MC4a LINE L1 -2312 5496 5317 2000 110 6 60 chr21 27277178 27277495 -17630075 - AluSx SINE Alu -12 300 1 1505 184 16 56 chr21 27277515 27277819 -17629751 - AluJo SINE Alu -20 292 1 222 322 0 0 chr21 27277955 27278014 -17629556 + CT-rich Low_complexity Low_complexity 2 60 0 296 186 0 14 chr21 27279283 27279353 -17628217 + (TATG)n Simple_repeat Simple_repeat 2 70 0 432 0 0 0 chr21 27279420 27279468 -17628102 + (TG)n Simple_repeat Simple_repeat 2 49 0 2000 127 7 0 chr21 27279468 27279751 -17627819 - AluSx SINE Alu -27 285 1 695 215 130 18 chr21 27279753 27280037 -17627533 + MER58D DNA MER1_type 71 386 0 1848 163 10 7 chr21 27280935 27281230 -17626340 - AluJb SINE Alu -16 296 1 878 317 66 76 chr21 27281880 27282887 -17624683 - L2 LINE L2 -198 3074 2079 2226 88 10 7 chr21 27282918 27283213 -17624357 + AluSx SINE Alu 1 296 -16 482 291 0 16 chr21 27283472 27283599 -17623971 - MER5A DNA MER1_type -64 125 1 2040 111 34 71 chr21 27283620 27283998 -17623572 - THE1B LTR MaLR 0 364 1 1500 145 13 0 chr21 27284136 27284363 -17623207 + AluJb SINE Alu 61 290 -22 2637 58 0 0 chr21 27285970 27286281 -17621289 - AluY SINE Alu 0 311 1 1408 201 36 4 chr21 27286767 27287041 -17620529 + AluJo SINE Alu 6 288 -24 26 0 0 0 chr21 27287126 27287152 -17620418 + AT_rich Low_complexity Low_complexity 1 26 0 820 177 30 61 chr21 27287369 27287567 -17620003 - MER58A DNA MER1_type 0 224 33 225 333 21 31 chr21 27287595 27287691 -17619879 - MIR SINE MIR -156 106 12 2259 92 0 13 chr21 27288536 27288841 -17618729 - AluSg SINE Alu -9 301 1 971 176 0 12 chr21 27288862 27289027 -17618543 - FRAM SINE Alu -3 163 1 370 183 70 0 chr21 27289028 27289099 -17618471 - MER5A DNA MER1_type -113 76 1 219 292 254 0 chr21 27289627 27289757 -17617813 - L3 LINE CR1 -92 1485 1323 882 172 92 2 chr21 27290736 27290987 -17616583 + MER2 DNA MER2_type 2 322 -23 354 338 97 26 chr21 27293015 27293169 -17614401 + L2 LINE L2 2904 3068 -204 2102 99 31 0 chr21 27293715 27294007 -17613563 - AluSg SINE Alu -9 301 1 669 114 20 2 chr21 27294132 27294388 -17613182 + AluSx SINE Alu 1 310 0 211 327 118 0 chr21 27295319 27295429 -17612141 - L2 LINE L2 -3 3310 3188 2294 97 3 7 chr21 27295750 27296050 -17611520 + AluSg SINE Alu 2 300 -10 2281 76 7 3 chr21 27296206 27296497 -17611073 + AluSp SINE Alu 1 292 -21 541 267 43 98 chr21 27297143 27297420 -17610150 + MIR SINE MIR 1 262 0 21 26 0 26 chr21 27298389 27298410 -17609160 + AT_rich Low_complexity Low_complexity 1 22 -16 2334 92 0 16 chr21 27298410 27298713 -17608857 - AluSx SINE Alu -14 298 1 21 26 0 26 chr21 27298713 27298730 -17608840 + AT_rich Low_complexity Low_complexity 22 38 0 383 250 144 25 chr21 27300407 27300567 -17607003 + MIR SINE MIR 32 210 -52 21 0 0 0 chr21 27300670 27300691 -17606879 + AT_rich Low_complexity Low_complexity 1 21 0 800 194 0 48 chr21 27301065 27301271 -17606299 - MER3 DNA MER1_type -2 207 12 1404 133 48 68 chr21 27301340 27301634 -17605936 - AluSx SINE Alu -24 288 1 543 291 89 64 chr21 27301677 27302035 -17605535 + L2 LINE L2 2611 2977 -337 211 292 67 34 chr21 27302219 27302308 -17605262 + L2 LINE L2 3167 3258 -55 507 288 22 14 chr21 27304247 27304410 -17603160 - MIR SINE MIR -39 169 3 310 184 20 20 chr21 27304465 27304563 -17603007 + (TA)n Simple_repeat Simple_repeat 2 99 0 1041 128 13 6 chr21 27304569 27304725 -17602845 + AluJb SINE Alu 141 297 -15 1599 107 82 7 chr21 27304834 27305104 -17602466 + MSTA LTR MaLR 139 428 0 757 171 106 14 chr21 27305111 27305328 -17602242 + Charlie1 DNA MER1_type 2525 2761 0 22 35 0 0 chr21 27305496 27305525 -17602045 + AT_rich Low_complexity Low_complexity 1 29 0 281 283 151 23 chr21 27305544 27305826 -17601744 + L2 LINE L2 2812 3139 -174 1605 190 27 6 chr21 27305999 27306336 -17601234 + MLT1A1 LTR MaLR 1 344 -21 3398 118 110 65 chr21 27306336 27307633 -17599937 - pTR5 LTR ERV1 0 2438 67 21 0 0 0 chr21 27308275 27308296 -17599274 + AT_rich Low_complexity Low_complexity 1 21 0 2047 210 75 2 chr21 27308794 27309236 -17598334 - REP3 LTR ERV 0 562 89 299 136 102 0 chr21 27309288 27309347 -17598223 + REP3 LTR ERV 44 108 -454 28 29 0 0 chr21 27310927 27310962 -17596608 + AT_rich Low_complexity Low_complexity 1 35 0 2358 70 0 13 chr21 27311216 27311514 -17596056 + AluY SINE Alu 1 294 -17 692 229 58 116 chr21 27312201 27312563 -17595007 - MLT1H LTR MaLR 0 549 209 267 103 0 0 chr21 27313781 27313820 -17593750 + (TG)n Simple_repeat Simple_repeat 2 40 0 364 148 55 8 chr21 27313903 27314031 -17593539 + (TA)n Simple_repeat Simple_repeat 2 135 0 1050 54 0 0 chr21 27315391 27315520 -17592050 + AluY SINE Alu 178 306 -5 186 273 117 13 chr21 27316809 27316886 -17590684 - MIR SINE MIR -14 248 164 * 986 314 82 7 chr21 27316879 27317419 -17590151 + L2 LINE L2 2730 3308 -5 323 314 43 29 chr21 27317419 27317528 -17590042 - MIR SINE MIR -117 145 32 2477 77 0 0 chr21 27317528 27317839 -17589731 - AluY SINE Alu 0 311 1 323 314 43 29 chr21 27317839 27317869 -17589701 - MIR SINE MIR -230 32 4 2464 91 3 0 chr21 27318836 27319145 -17588425 + AluSg SINE Alu 1 310 0 689 216 0 6 chr21 27319742 27319923 -17587647 + GA-rich Low_complexity Low_complexity 1 180 0 2509 68 3 0 chr21 27320315 27320624 -17586946 - AluY SINE Alu 0 311 2 1201 193 52 0 chr21 27320797 27321102 -17586468 - MER33 DNA MER1_type -2 322 2 1570 219 0 25 chr21 27321410 27321730 -17585840 - AluJo SINE Alu 0 312 1 712 297 12 35 chr21 27321750 27322009 -17585561 - MIR SINE MIR -1 261 9 306 329 136 7 chr21 27322066 27322221 -17585349 - MIR3 SINE MIR -14 194 20 2292 107 0 0 chr21 27322850 27323150 -17584420 - AluSx SINE Alu -12 300 1 219 36 0 0 chr21 27323411 27323439 -17584131 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2267 54 0 34 chr21 27323442 27323737 -17583833 - AluY SINE Alu -26 285 1 531 311 18 6 chr21 27323745 27323909 -17583661 + MIR SINE MIR 47 212 -50 1225 165 42 9 chr21 27324037 27324249 -17583321 + MER20 DNA MER1_type 1 219 0 981 238 0 5 chr21 27324257 27324446 -17583124 - MER5A DNA MER1_type 0 189 2 664 216 84 24 chr21 27324556 27324723 -17582847 + MER76 LTR ERV 1 177 -511 1868 132 4 7 chr21 27324736 27325009 -17582561 + AluJb SINE Alu 16 287 -25 330 153 0 0 chr21 27325013 27325072 -17582498 + G-rich Low_complexity Low_complexity 5 63 0 496 297 73 22 chr21 27325149 27325510 -17582060 + MER76 LTR ERV 199 648 -40 509 159 0 15 chr21 27325672 27325779 -17581791 - MER5A DNA MER1_type -81 108 4 713 278 142 67 chr21 27326181 27326598 -17580972 - L2 LINE L2 0 3272 2825 571 256 74 104 chr21 27326599 27327033 -17580537 - MLT1K LTR MaLR 0 588 168 31 0 0 0 chr21 27327394 27327425 -17580145 + AT_rich Low_complexity Low_complexity 1 31 0 849 220 6 6 chr21 27327941 27328118 -17579452 - MER3 DNA MER1_type -30 179 3 533 316 57 34 chr21 27328209 27328418 -17579152 + L2 LINE L2 2499 2712 -602 424 282 58 43 chr21 27328465 27328653 -17578917 - MIR SINE MIR -9 253 63 1637 173 3 44 chr21 27329032 27329350 -17578220 - AluJo SINE Alu 0 306 1 2700 36 0 0 chr21 27329747 27330054 -17577516 + AluY SINE Alu 1 307 -4 389 241 82 44 chr21 27330306 27330464 -17577106 - MIR SINE MIR -97 165 2 * 530 268 72 7 chr21 27330464 27330548 -17577022 + MIR SINE MIR 84 177 -85 351 159 16 0 chr21 27330582 27330645 -17576925 - MLT1F LTR MaLR 0 567 504 2561 58 0 10 chr21 27330645 27330956 -17576614 - AluY SINE Alu -3 308 1 233 118 0 0 chr21 27331011 27331045 -17576525 - Alu SINE Alu -268 34 1 429 253 0 0 chr21 27331047 27331138 -17576432 - MLT1F LTR MaLR -60 482 392 281 226 16 0 chr21 27331163 27331225 -17576345 - MLT1K LTR MaLR -479 63 1 267 216 167 39 chr21 27331292 27331351 -17576219 + L3 LINE CR1 563 613 -964 2308 83 3 0 chr21 27331351 27331652 -17575918 - AluY SINE Alu -9 302 1 267 216 167 39 chr21 27331652 27331694 -17575876 + L3 LINE CR1 613 677 -900 298 246 91 0 chr21 27331694 27331804 -17575766 - Charlie7 DNA MER1_type 0 2612 2493 * 465 173 83 30 chr21 27331784 27331917 -17575653 - Charlie7 DNA MER1_type -2448 164 25 345 294 71 91 chr21 27332029 27332226 -17575344 - MER91A DNA MER1_type 0 196 4 1050 91 0 0 chr21 27332425 27332557 -17575013 - FLAM_C SINE Alu 0 133 2 1925 210 123 14 chr21 27332607 27333031 -17574539 + MLT1F1 LTR MaLR 50 519 -48 1080 222 0 23 chr21 27333032 27333248 -17574322 + MER58A DNA MER1_type 2 212 -12 1805 130 3 47 chr21 27333251 27333390 -17574180 + AluJb SINE Alu 1 122 -190 2211 107 0 13 chr21 27333390 27333690 -17573880 + AluSx SINE Alu 1 296 -16 1805 130 3 47 chr21 27333690 27333849 -17573721 + AluJb SINE Alu 122 286 -26 214 128 0 26 chr21 27334124 27334163 -17573407 + MER5A DNA MER1_type 9 46 -143 1757 105 21 0 chr21 27336132 27336371 -17571199 - AluSx SINE Alu -16 296 53 400 388 20 7 chr21 27336390 27336542 -17571028 - MER91A DNA MER1_type -40 156 3 2309 105 0 0 chr21 27336977 27337283 -17570287 + AluSg1 SINE Alu 1 306 -3 390 246 148 11 chr21 27337419 27337759 -17569811 + MLT1L LTR MaLR 146 584 -31 270 261 162 18 chr21 27337788 27337899 -17569671 - MIR SINE MIR -26 236 110 473 321 47 28 chr21 27337900 27338023 -17569547 - L1MC/D LINE L1 -407 5714 5598 1704 224 21 50 chr21 27338023 27338406 -17569164 + MLT1A2 LTR MaLR 1 372 -2 473 321 47 28 chr21 27338406 27338497 -17569073 - L1MC/D LINE L1 -523 5598 5510 276 315 11 0 chr21 27338566 27338655 -17568915 + MIR SINE MIR 81 170 -92 527 273 117 28 chr21 27339760 27340042 -17567528 - L1MC/D LINE L1 -2150 5658 5352 2349 237 151 52 chr21 27340251 27340328 -17567242 - HAL1 LINE L1 -1253 1254 1186 1955 167 0 3 chr21 27340328 27340639 -17566931 - AluSx SINE Alu -2 310 1 2349 237 151 52 chr21 27340639 27340916 -17566654 - HAL1 LINE L1 -1321 1186 938 2220 111 0 0 chr21 27340916 27341241 -17566329 + AluY SINE Alu 1 311 0 2349 237 151 52 chr21 27341241 27341956 -17565614 - HAL1 LINE L1 -1569 938 65 2162 95 0 11 chr21 27341956 27342276 -17565294 + AluSc SINE Alu 1 317 0 2349 237 151 52 chr21 27342276 27342326 -17565244 - HAL1 LINE L1 -2442 65 21 215 243 14 0 chr21 27342441 27342511 -17565059 + T-rich Low_complexity Low_complexity 2 72 0 1881 94 98 4 chr21 27342760 27343036 -17564534 - AluSg SINE Alu -8 302 1 557 107 12 48 chr21 27343420 27343504 -17564066 - AluSg/x SINE Alu -40 269 189 1898 95 8 26 chr21 27343508 27343772 -17563798 - AluSx SINE Alu -53 259 1 30 27 0 0 chr21 27343982 27344019 -17563551 + AT_rich Low_complexity Low_complexity 1 37 0 1980 143 0 0 chr21 27344023 27344310 -17563260 - AluSx SINE Alu -25 287 1 2028 157 0 0 chr21 27344326 27344632 -17562938 - AluJb SINE Alu -6 306 1 550 285 5 6 chr21 27345432 27345591 -17561979 + MIR SINE MIR 13 170 -58 531 153 226 0 chr21 27345629 27345753 -17561817 - MER45A DNA AcHobo -26 152 1 254 314 0 0 chr21 27345753 27345823 -17561747 + MIR SINE MIR 163 232 -30 244 326 45 0 chr21 27345860 27345949 -17561621 - MIR SINE MIR -71 137 45 26 30 0 0 chr21 27346275 27346308 -17561262 + AT_rich Low_complexity Low_complexity 1 33 0 253 242 45 0 chr21 27346316 27346382 -17561188 + MIR3 SINE MIR 123 191 -17 24 32 0 0 chr21 27346712 27346743 -17560827 + AT_rich Low_complexity Low_complexity 1 31 0 192 40 0 0 chr21 27347067 27347092 -17560478 + (TTTAA)n Simple_repeat Simple_repeat 4 28 0 30 0 0 0 chr21 27348007 27348037 -17559533 + AT_rich Low_complexity Low_complexity 1 30 0 1915 110 4 0 chr21 27348037 27348292 -17559278 - AluSx SINE Alu -22 290 35 220 184 0 20 chr21 27348366 27348415 -17559155 - L2 LINE L2 -4 3268 3221 2188 258 97 47 chr21 27348774 27349604 -17557966 - HAL1 LINE L1 0 2507 1612 2329 106 0 7 chr21 27349604 27349906 -17557664 - AluSq SINE Alu -13 300 1 2188 258 97 47 chr21 27349906 27350124 -17557446 - HAL1 LINE L1 -895 1612 1406 447 306 12 17 chr21 27350320 27350493 -17557077 + MIR SINE MIR 64 235 -27 514 90 18 45 chr21 27350598 27350709 -17556861 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 1835 165 0 0 chr21 27350725 27350998 -17556572 + AluJb SINE Alu 1 273 -39 660 340 106 3 chr21 27351067 27351444 -17556126 + MLT1K LTR MaLR 160 575 -13 2432 217 124 57 chr21 27352052 27352826 -17554744 - LTR1B LTR ERV1 0 826 1 22 70 0 0 chr21 27352830 27352873 -17554697 + AT_rich Low_complexity Low_complexity 1 43 0 2275 120 0 3 chr21 27352997 27353305 -17554265 - AluSq SINE Alu -6 307 1 910 225 106 56 chr21 27353333 27353778 -17553792 + L1MC5 LINE L1 7278 7744 -217 2323 101 0 3 chr21 27354014 27354322 -17553248 + AluSg SINE Alu 1 307 -3 1285 196 24 121 chr21 27354542 27354915 -17552655 + MER58B DNA MER1_type 1 337 -4 283 357 10 0 chr21 27354916 27355014 -17552556 - MIR SINE MIR -73 135 37 617 271 43 14 chr21 27355074 27355281 -17552289 - MIR SINE MIR -13 249 37 761 164 7 227 chr21 27356157 27356385 -17551185 + MER58A DNA MER1_type 2 156 -2264 2360 108 0 6 chr21 27356385 27356700 -17550870 - AluSq SINE Alu 0 313 1 761 164 7 227 chr21 27356700 27356757 -17550813 + MER58A DNA MER1_type 156 224 0 23 0 0 0 chr21 27357228 27357251 -17550319 + AT_rich Low_complexity Low_complexity 1 23 0 2550 54 0 0 chr21 27358247 27358543 -17549027 - AluY SINE Alu -15 296 1 272 328 9 50 chr21 27358577 27358763 -17548807 + MIR SINE MIR 16 192 -62 5607 153 71 9 chr21 27358997 27360073 -17547497 - L1MC2 LINE L1 -27 6317 5174 203 0 0 36 chr21 27360633 27360661 -17546909 + (GGGAA)n Simple_repeat Simple_repeat 3 29 0 222 214 0 0 chr21 27361732 27361774 -17545796 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 2076 145 0 0 chr21 27362447 27362750 -17544820 - AluSx SINE Alu -8 304 2 854 115 0 39 chr21 27364177 27364307 -17543263 + FLAM_C SINE Alu 1 125 -8 264 224 17 0 chr21 27364550 27364608 -17542962 + ERVL LTR ERVL 3748 3806 -1958 209 274 192 48 chr21 27364665 27364709 -17542861 - MIR SINE MIR -49 213 177 2561 67 0 6 chr21 27364709 27365022 -17542548 + AluY SINE Alu 1 311 0 209 274 192 48 chr21 27365022 27365123 -17542447 - MIR SINE MIR -85 177 47 23 0 0 0 chr21 27365756 27365779 -17541791 + AT_rich Low_complexity Low_complexity 1 23 0 280 245 29 49 chr21 27365913 27366015 -17541555 - MER5A DNA MER1_type 0 189 90 2176 114 13 0 chr21 27366454 27366762 -17540808 - AluSx SINE Alu 0 312 1 444 318 133 5 chr21 27366842 27367053 -17540517 + MIR SINE MIR 7 244 -18 198 324 29 0 chr21 27367363 27367431 -17540139 - L2 LINE L2 -206 3066 2997 1525 167 69 7 chr21 27368641 27368916 -17538654 + AluJo SINE Alu 1 292 -20 802 80 0 0 chr21 27369226 27369326 -17538244 - HY3 scRNA scRNA -1 100 1 2232 95 3 3 chr21 27369531 27369826 -17537744 - AluSx SINE Alu -17 295 1 225 0 0 0 chr21 27369837 27369862 -17537708 + (T)n Simple_repeat Simple_repeat 1 25 0 270 294 82 67 chr21 27370290 27370484 -17537086 - MIR SINE MIR -19 243 47 1679 191 7 0 chr21 27370723 27371017 -17536553 - AluJo SINE Alu -16 296 1 2226 108 7 0 chr21 27371175 27371482 -17536088 + AluY SINE Alu 1 309 -2 30 27 0 0 chr21 27371895 27371932 -17535638 + AT_rich Low_complexity Low_complexity 1 37 0 1857 164 0 7 chr21 27372014 27372306 -17535264 - AluJb SINE Alu -20 292 3 433 340 65 0 chr21 27372648 27372848 -17534722 - MIR SINE MIR -15 247 35 817 204 42 6 chr21 27373046 27373213 -17534357 - MER45A DNA AcHobo -1 177 5 2385 89 0 0 chr21 27373361 27373664 -17533906 - AluSp SINE Alu -10 303 1 2067 105 0 54 chr21 27374092 27374406 -17533164 - AluSx SINE Alu -15 297 1 275 305 113 23 chr21 27374481 27374658 -17532912 + MIR3 SINE MIR 4 196 -12 21 0 0 0 chr21 27376002 27376023 -17531547 + AT_rich Low_complexity Low_complexity 1 21 0 451 144 43 32 chr21 27377106 27377460 -17530110 + (TATATG)n Simple_repeat Simple_repeat 1 358 0 516 123 32 52 chr21 27377474 27377759 -17529811 + (TATATG)n Simple_repeat Simple_repeat 1 279 0 489 147 51 6 chr21 27377817 27377974 -17529596 + (TATATG)n Simple_repeat Simple_repeat 5 168 0 349 155 35 49 chr21 27377988 27378248 -17529322 + (TATATG)n Simple_repeat Simple_repeat 1 256 0 2335 106 0 0 chr21 27380708 27381011 -17526559 - AluSx SINE Alu -9 303 1 1969 91 57 57 chr21 27381135 27381433 -17526137 + AluSg SINE Alu 1 298 -12 259 103 0 0 chr21 27381433 27381472 -17526098 - MADE1 DNA Mariner -41 39 1 275 274 150 9 chr21 27382607 27382720 -17524850 - MIR SINE MIR -17 245 117 2026 164 0 3 chr21 27383385 27383690 -17523880 - AluJb SINE Alu -8 304 1 542 310 120 5 chr21 27383944 27384160 -17523410 + MIR SINE MIR 11 251 -11 1177 122 0 0 chr21 27387053 27387234 -17520336 - L1MB2 LINE L1 0 6171 5991 1827 128 0 0 chr21 27388859 27389110 -17518460 - AluSx SINE Alu -9 303 53 261 358 49 0 chr21 27390726 27390849 -17516721 + L2 LINE L2 3143 3271 -1 2305 82 3 7 chr21 27390970 27391261 -17516309 + AluSx SINE Alu 1 290 -22 674 152 0 0 chr21 27391264 27391369 -17516201 - AluJo/FLAM SINE Alu -185 127 23 219 244 0 0 chr21 27391751 27391796 -17515774 + MIR SINE MIR 1 45 -217 2387 90 0 3 chr21 27392341 27392641 -17514929 + AluSq SINE Alu 1 299 -14 2135 112 10 19 chr21 27392765 27393078 -17514492 + AluSx SINE Alu 1 310 -2 1698 169 17 24 chr21 27393627 27393917 -17513653 - AluJo SINE Alu -2 310 23 720 147 0 0 chr21 27393947 27394056 -17513514 + AluSg/x SINE Alu 189 297 -15 21 36 0 0 chr21 27394996 27395024 -17512546 + AT_rich Low_complexity Low_complexity 1 28 0 24 22 0 43 chr21 27395254 27395279 -17512291 + AT_rich Low_complexity Low_complexity 1 25 -19 1496 91 10 0 chr21 27395279 27395488 -17512082 - L1PB1 LINE L1 0 6151 5941 24 22 0 43 chr21 27395488 27395508 -17512062 + AT_rich Low_complexity Low_complexity 25 44 0 180 0 0 0 chr21 27395510 27395530 -17512040 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1820 122 48 0 chr21 27395532 27395802 -17511768 - AluSx SINE Alu -29 283 1 3464 123 19 24 chr21 27395809 27396395 -17511175 - L1MA6 LINE L1 -1 6299 5717 3951 162 34 10 chr21 27396395 27397212 -17510358 - L1MB7 LINE L1 -66 6118 5279 2454 79 3 0 chr21 27397635 27397938 -17509632 - AluY SINE Alu -6 305 2 246 283 0 0 chr21 27398304 27398357 -17509213 + L2 LINE L2 3261 3313 0 934 32 95 8 chr21 27398620 27398746 -17508824 - MER85 DNA T2_type -2 137 1 713 206 55 60 chr21 27398939 27399157 -17508413 + MER20 DNA MER1_type 3 219 0 2239 115 3 0 chr21 27400573 27400877 -17506693 - AluSx SINE Alu -4 308 4 26 0 0 0 chr21 27400881 27400907 -17506663 + AT_rich Low_complexity Low_complexity 1 26 0 294 214 14 0 chr21 27401322 27401392 -17506178 + Charlie7 DNA MER1_type 27 97 -2515 285 228 24 102 chr21 27401420 27401477 -17506093 - L1MC4 LINE L1 -5 8037 7994 2199 99 31 0 chr21 27401477 27401771 -17505799 + AluSx SINE Alu 3 305 -7 285 228 24 102 chr21 27401771 27401840 -17505730 - L1MC4 LINE L1 -48 7994 7921 270 256 0 0 chr21 27401873 27401951 -17505619 + (TA)n Simple_repeat Simple_repeat 2 79 0 1573 202 153 26 chr21 27401957 27402532 -17505038 - L1MC4 LINE L1 -176 7866 7219 275 228 66 78 chr21 27402534 27402701 -17504869 + Charlie7 DNA MER1_type 2444 2608 -4 1789 180 7 0 chr21 27403646 27403941 -17503629 - AluJo SINE Alu -15 297 1 793 169 12 0 chr21 27405950 27406110 -17501460 + CT-rich Low_complexity Low_complexity 2 163 0 2164 129 7 0 chr21 27406110 27406420 -17501150 - AluSx SINE Alu 0 312 1 727 260 48 0 chr21 27406571 27406779 -17500791 + MER20 DNA MER1_type 2 219 0 184 219 0 0 chr21 27406897 27406929 -17500641 + MIR SINE MIR 115 146 -62 374 375 0 35 chr21 27408510 27408654 -17498916 - L2 LINE L2 0 3272 3134 1748 212 179 4 chr21 27408671 27409147 -17498423 + MLT1F1 LTR MaLR 1 559 -8 2195 81 46 0 chr21 27409217 27409501 -17498069 + AluSq SINE Alu 2 298 -15 348 320 116 34 chr21 27409519 27409847 -17497723 - L2 LINE L2 -212 3060 2718 2044 109 7 36 chr21 27409884 27410187 -17497383 + AluSx SINE Alu 1 294 -18 732 274 14 5 chr21 27410366 27410581 -17496989 - U3 snRNA snRNA 0 217 1 459 0 0 0 chr21 27410852 27410903 -17496667 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1440 163 58 18 chr21 27410903 27411175 -17496395 - AluJo SINE Alu -29 283 1 233 29 29 0 chr21 27411175 27411209 -17496361 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2119 102 3 3 chr21 27411219 27411502 -17496068 - AluSp SINE Alu -30 283 1 333 273 60 11 chr21 27412985 27413168 -17494402 - LTR33 LTR ERVL 0 521 330 589 276 11 16 chr21 27413242 27413427 -17494143 - LTR33 LTR ERVL -337 184 1 2213 104 0 16 chr21 27413492 27413801 -17493769 - AluSx SINE Alu -8 304 1 2172 159 41 25 chr21 27413922 27414362 -17493208 + MSTB2 LTR MaLR 11 457 0 582 145 138 25 chr21 27414365 27414524 -17493046 + MER53 DNA DNA 1 177 -12 289 286 19 9 chr21 27414683 27414788 -17492782 + MER103 DNA DNA 2 107 -59 551 268 138 31 chr21 27415411 27415665 -17491905 - MLT1J LTR MaLR -3 508 228 1537 221 85 37 chr21 27415734 27416169 -17491401 + MLT2B1 LTR ERVL 5 468 -52 396 0 0 0 chr21 27416169 27416213 -17491357 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1537 221 85 37 chr21 27416213 27416269 -17491301 + MLT2B1 LTR ERVL 468 520 0 216 0 0 0 chr21 27416639 27416663 -17490907 + (TG)n Simple_repeat Simple_repeat 1 24 0 739 250 17 6 chr21 27417199 27417375 -17490195 - MER45A DNA AcHobo 0 178 1 324 89 0 0 chr21 27417922 27417967 -17489603 - MLT2D LTR ERVL -7 513 469 1036 222 31 86 chr21 27418034 27418394 -17489176 - MLT2D LTR ERVL -66 348 9 2226 113 3 3 chr21 27418662 27418972 -17488598 - AluSq SINE Alu -2 311 2 389 306 27 128 chr21 27419611 27419816 -17487754 + L2 LINE L2 2945 3112 -160 2227 111 0 0 chr21 27419816 27420122 -17487448 + AluSg SINE Alu 5 310 0 389 306 27 128 chr21 27420122 27420213 -17487357 + L2 LINE L2 3112 3211 -61 800 166 80 0 chr21 27420486 27420661 -17486909 + MER53 DNA DNA 1 189 0 195 288 38 91 chr21 27421651 27421783 -17485787 - L2 LINE L2 -129 3143 3019 2505 75 3 0 chr21 27421972 27422278 -17485292 - AluSp SINE Alu -6 307 1 37 39 0 0 chr21 27422340 27422391 -17485179 + AT_rich Low_complexity Low_complexity 1 51 0 527 214 97 14 chr21 27422967 27423112 -17484458 + MER50 LTR ERV1 10 166 -568 1310 215 122 23 chr21 27423176 27423604 -17483966 + MER50 LTR ERV1 240 709 -25 187 71 0 0 chr21 27423657 27423685 -17483885 + (TTTG)n Simple_repeat Simple_repeat 1 96 0 1687 129 7 79 chr21 27423685 27423988 -17483582 - AluSx SINE Alu -1 308 1 663 214 154 53 chr21 27424224 27424580 -17482990 - LTR37A LTR ERV1 -2 424 33 2890 127 52 0 chr21 27424700 27425197 -17482373 - MER34C LTR ERV1 0 585 63 195 162 0 0 chr21 27425442 27425479 -17482091 + (TAA)n Simple_repeat Simple_repeat 3 39 0 213 350 10 20 chr21 27425498 27425598 -17481972 - MIR SINE MIR -15 247 149 25 0 0 0 chr21 27426661 27426686 -17480884 + AT_rich Low_complexity Low_complexity 1 25 0 3030 150 89 26 chr21 27427083 27427800 -17479770 + LTR1B LTR ERV1 1 785 0 4411 224 52 90 chr21 27427957 27428309 -17479261 - L1M4 LINE L1 -716 5960 5596 1862 157 29 64 chr21 27428309 27428351 -17479219 - THE1B LTR MaLR 0 364 322 2285 118 0 34 chr21 27428351 27428674 -17478896 + AluSx SINE Alu 1 312 0 1862 157 29 64 chr21 27428674 27429008 -17478562 - THE1B LTR MaLR -42 322 1 4222 89 3 36 chr21 27429011 27429642 -17477928 + MER4B LTR ERV1 1 610 0 4411 224 52 90 chr21 27429642 27429706 -17477864 - L1M4 LINE L1 -1082 5594 5529 2343 105 0 0 chr21 27429706 27430001 -17477569 - AluSx SINE Alu -17 295 1 4411 224 52 90 chr21 27430001 27431862 -17475708 - L1M4 LINE L1 -1147 5529 3785 5476 215 41 55 chr21 27431883 27432674 -17474896 - L1M4 LINE L1 -4657 1989 1188 1209 158 0 23 chr21 27432674 27432889 -17474681 + L1PA16 LINE L1 5941 6150 -16 5476 215 41 55 chr21 27432889 27434102 -17473468 - L1M4 LINE L1 -5458 1188 16 503 276 71 31 chr21 27434126 27434452 -17473118 - LTR37A LTR ERV1 0 426 88 248 300 29 0 chr21 27434688 27434758 -17472812 + MIR3 SINE MIR 109 180 -28 859 187 105 0 chr21 27434761 27434932 -17472638 + MER5A DNA MER1_type 1 189 0 2106 130 55 6 chr21 27434971 27435318 -17472252 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr21 27435434 27435457 -17472113 + AT_rich Low_complexity Low_complexity 1 23 0 2556 58 0 3 chr21 27435464 27435776 -17471794 + AluY SINE Alu 1 311 0 371 236 64 0 chr21 27436583 27436693 -17470877 - MER103 DNA DNA -48 118 2 442 270 204 13 chr21 27437006 27437158 -17470412 + MER5A DNA MER1_type 9 189 0 1285 202 89 52 chr21 27437447 27437829 -17469741 - MSTD LTR MaLR 0 396 1 256 143 0 0 chr21 27438007 27438049 -17469521 - 5S rRNA rRNA -79 42 1 2150 139 3 0 chr21 27439161 27439462 -17468108 + AluSx SINE Alu 1 302 -10 329 223 0 44 chr21 27439462 27439612 -17467958 + MER3 DNA MER1_type 19 208 -1 236 270 14 14 chr21 27439560 27439634 -17467936 - MER3 DNA MER1_type -108 101 28 * 230 233 12 70 chr21 27440225 27440311 -17467259 + MARNA DNA Mariner 154 234 -352 4417 180 48 15 chr21 27440472 27441701 -17465869 + L1MB3 LINE L1 4918 6183 0 752 160 52 39 chr21 27442608 27442925 -17464645 + MLT1A1 LTR MaLR 2 374 0 918 135 0 0 chr21 27443524 27443552 -17464018 + (CA)n Simple_repeat Simple_repeat 1 206 0 918 135 0 0 chr21 27443552 27443730 -17463840 + (CA)n Simple_repeat Simple_repeat 1 178 0 735 185 0 7 chr21 27443791 27444343 -17463227 + (CA)n Simple_repeat Simple_repeat 1 547 0 834 198 13 67 chr21 27445166 27445404 -17462166 - L1MA10 LINE L1 -18 6316 6092 325 256 93 0 chr21 27445599 27445685 -17461885 + L2 LINE L2 3171 3264 -8 1088 193 9 0 chr21 27445753 27445966 -17461604 - MER58A DNA MER1_type 0 224 10 200 299 60 0 chr21 27447330 27447397 -17460173 + MIR SINE MIR 122 192 -70 2184 126 0 3 chr21 27447407 27447709 -17459861 + AluSx SINE Alu 1 301 -11 342 363 48 56 chr21 27447938 27448189 -17459381 + L2 LINE L2 2998 3246 -26 374 375 58 11 chr21 27448340 27448601 -17458969 + L2 LINE L2 2604 2876 -438 752 327 119 52 chr21 27448802 27449450 -17458120 - L1MEd LINE L1 -5358 761 71 202 330 0 75 chr21 27449766 27449860 -17457710 + L2 LINE L2 3186 3272 0 858 191 38 0 chr21 27449928 27450085 -17457485 + FRAM SINE Alu 1 163 -13 784 255 130 0 chr21 27450221 27450429 -17457141 - MIR SINE MIR -21 241 7 220 358 67 30 chr21 27450527 27450692 -17456878 - L3b LINE CR1 -103 1480 1310 2006 153 0 0 chr21 27450834 27451135 -17456435 - AluSx SINE Alu -11 301 1 1994 171 11 21 chr21 27453820 27454199 -17453371 + THE1C LTR MaLR 1 375 0 746 187 105 5 chr21 27454683 27454892 -17452678 - MER33 DNA MER1_type -93 231 2 540 257 97 35 chr21 27454909 27455248 -17452322 - HAL1b LINE L1 -900 448 89 969 257 29 13 chr21 27455648 27456025 -17451545 - L1M4 LINE L1 -2481 3665 3283 364 386 96 6 chr21 27456163 27456518 -17451052 + L2 LINE L2 2327 2713 -601 2025 155 19 8 chr21 27456564 27456925 -17450645 - MLT1A1 LTR MaLR 0 365 1 240 35 0 0 chr21 27456988 27457017 -17450553 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 194 320 177 39 chr21 27457056 27457237 -17450333 + L2 LINE L2 2854 3059 -213 198 184 105 0 chr21 27457348 27457386 -17450184 + L2 LINE L2 3267 3308 -5 391 325 77 18 chr21 27457489 27457658 -17449912 - MIR SINE MIR -71 191 13 433 300 100 115 chr21 27458615 27459447 -17448123 + L3 LINE CR1 454 1271 -306 2932 9 0 0 chr21 27459447 27459765 -17447805 + AluYb8 SINE Alu 1 318 0 433 300 100 115 chr21 27459765 27459886 -17447684 + L3 LINE CR1 1271 1392 -185 1757 168 58 28 chr21 27459908 27460272 -17447298 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr21 27460397 27460423 -17447147 + AT_rich Low_complexity Low_complexity 1 26 0 4498 111 31 20 chr21 27461328 27461493 -17446077 - LTR8 LTR ERV1 0 691 529 2305 92 3 0 chr21 27461493 27461786 -17445784 - AluSc SINE Alu -15 294 1 4498 111 31 20 chr21 27461786 27462304 -17445266 - LTR8 LTR ERV1 -162 529 1 434 329 20 7 chr21 27462337 27462489 -17445081 + MIR SINE MIR 1 154 -108 1731 142 73 50 chr21 27462708 27462994 -17444576 - MLT1B LTR MaLR 0 390 91 2818 112 19 7 chr21 27462994 27463423 -17444147 + MER57B LTR ERV1 1 434 0 1731 142 73 50 chr21 27463423 27463517 -17444053 - MLT1B LTR MaLR -299 91 1 1066 126 10 39 chr21 27463846 27464052 -17443518 + LTR24C LTR ERV1 1 200 -435 * 3372 188 34 31 chr21 27464042 27464839 -17442731 - LTR1B LTR ERV1 -27 799 1 2241 153 45 2 chr21 27464842 27465266 -17442304 + LTR24C LTR ERV1 194 635 0 270 277 20 81 chr21 27466758 27466906 -17440664 + MIR3 SINE MIR 38 176 -32 228 296 15 67 chr21 27468065 27468200 -17439370 - MLT1I LTR MaLR -28 381 254 834 204 1 10 chr21 27468221 27468412 -17439158 - L1MA3 LINE L1 -131 6058 5885 284 269 64 57 chr21 27468412 27468553 -17439017 - MLT1I LTR MaLR -175 234 93 2154 129 0 0 chr21 27469819 27470128 -17437442 - AluSx SINE Alu -3 309 1 2133 112 40 69 chr21 27470609 27470984 -17436586 + THE1B LTR MaLR 1 364 0 2279 110 0 0 chr21 27471455 27471755 -17435815 + AluSq SINE Alu 1 300 -13 399 286 17 8 chr21 27472369 27472488 -17435082 - L2 LINE L2 -3 3310 3191 2117 136 0 0 chr21 27472570 27472864 -17434706 + AluSq SINE Alu 1 294 -19 2642 154 24 0 chr21 27473253 27473675 -17433895 - MSTB1 LTR MaLR 0 432 1 1629 132 0 0 chr21 27473722 27473950 -17433620 - AluSg/x SINE Alu -2 308 81 1094 138 8 107 chr21 27474106 27474359 -17433211 - L1M1 LINE L1 -568 5737 5510 1687 86 0 0 chr21 27474360 27474594 -17432976 + L1MA3 LINE L1 6062 6295 -10 23 0 0 0 chr21 27475919 27475942 -17431628 + AT_rich Low_complexity Low_complexity 1 23 0 1268 130 31 75 chr21 27476201 27476455 -17431115 - AluJo SINE Alu 0 312 70 277 284 148 0 chr21 27476792 27476880 -17430690 - MIR SINE MIR -66 142 42 3042 128 16 14 chr21 27476894 27477392 -17430178 - L1PB4 LINE L1 -2 6154 5656 207 82 41 61 chr21 27478041 27478090 -17429480 + T-rich Low_complexity Low_complexity 3 50 0 198 0 0 0 chr21 27478396 27478418 -17429152 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4643 133 21 3 chr21 27479133 27480070 -17427500 - L1PA16 LINE L1 -10 6156 5172 21 82 0 0 chr21 27480076 27480125 -17427445 + AT_rich Low_complexity Low_complexity 1 49 0 2172 228 46 41 chr21 27480401 27480990 -17426580 + MLT1E LTR MaLR 2 593 0 349 292 94 42 chr21 27481434 27481626 -17425944 - L1M4 LINE L1 -1922 4224 4023 748 212 58 26 chr21 27481943 27482087 -17425483 - MIR SINE MIR -29 233 95 2300 113 14 8 chr21 27482087 27482440 -17425130 - THE1A LTR MaLR 0 355 1 11623 105 4 1 chr21 27482440 27484014 -17423556 - THE1A-int LTR MaLR 0 1580 1 2364 116 8 8 chr21 27484014 27484369 -17423201 - THE1A LTR MaLR 0 355 1 748 212 58 26 chr21 27484369 27484411 -17423159 - MIR SINE MIR -166 96 39 1544 244 28 5 chr21 27484435 27484858 -17422712 - L1ME1 LINE L1 -94 6072 5640 465 196 29 29 chr21 27484963 27485101 -17422469 - L1MDa LINE L1 -5354 1186 1049 2130 172 69 38 chr21 27485104 27485270 -17422300 - L1ME1 LINE L1 -115 6051 5892 2253 101 20 0 chr21 27485270 27485566 -17422004 + AluSg SINE Alu 1 302 -8 2130 172 69 38 chr21 27485566 27485933 -17421637 - L1ME1 LINE L1 -274 5892 5501 232 231 85 77 chr21 27486838 27486968 -17420602 + MIR SINE MIR 84 214 -48 540 248 22 15 chr21 27487376 27487513 -17420057 + MLT1G LTR MaLR 25 162 -428 221 130 43 0 chr21 27487532 27487578 -17419992 + (TA)n Simple_repeat Simple_repeat 1 48 0 399 55 0 0 chr21 27487578 27487633 -17419937 + MLT2A2 LTR ERVL 399 453 0 370 340 53 0 chr21 27487692 27487842 -17419728 - MIR SINE MIR -15 247 90 185 172 47 78 chr21 27488048 27488112 -17419458 - MIR SINE MIR -41 221 160 292 333 58 78 chr21 27488167 27488277 -17419293 + MIR SINE MIR 3 114 -148 2091 117 4 0 chr21 27488277 27488558 -17419012 + AluSx SINE Alu 1 282 -30 292 333 58 78 chr21 27488558 27488705 -17418865 + MIR SINE MIR 114 255 -7 224 132 57 0 chr21 27489486 27489539 -17418031 + (TA)n Simple_repeat Simple_repeat 2 57 0 278 347 131 46 chr21 27489614 27490058 -17417512 + L2 LINE L2 2543 3014 -258 748 179 58 24 chr21 27490062 27490215 -17417355 - MSTC LTR MaLR -11 385 239 222 37 0 0 chr21 27490215 27490242 -17417328 + (GA)n Simple_repeat Simple_repeat 2 28 0 748 179 58 24 chr21 27490242 27490419 -17417151 - MSTC LTR MaLR -157 239 1 206 322 0 17 chr21 27490420 27490479 -17417091 + L2 LINE L2 3012 3069 -203 195 229 0 66 chr21 27490554 27490615 -17416955 + L2 LINE L2 3257 3313 0 608 281 134 4 chr21 27490641 27490872 -17416698 + MIR SINE MIR 2 262 0 345 159 0 0 chr21 27491411 27491474 -17416096 + GA-rich Low_complexity Low_complexity 2 64 0 13994 118 57 21 chr21 27492020 27494353 -17413217 - Tigger1 DNA MER2_type 0 2418 1 429 265 95 70 chr21 27494799 27495018 -17412552 - MIR SINE MIR -31 231 10 181 128 43 0 chr21 27495149 27495196 -17412374 + (TA)n Simple_repeat Simple_repeat 2 50 0 1958 118 39 0 chr21 27495369 27495649 -17411921 + AluSx SINE Alu 6 296 -16 2262 134 22 8 chr21 27495680 27496039 -17411531 + THE1B LTR MaLR 1 364 0 345 259 102 0 chr21 27496174 27496282 -17411288 - MER5B DNA MER1_type -59 119 1 2116 142 0 0 chr21 27496372 27496667 -17410903 + AluSx SINE Alu 1 295 -17 1253 179 118 14 chr21 27497347 27497626 -17409944 - AluSg1 SINE Alu -1 308 1 401 293 84 6 chr21 27497688 27497855 -17409715 - MIR SINE MIR -12 250 71 355 338 131 0 chr21 27498198 27498358 -17409212 + MER5A DNA MER1_type 9 189 0 2225 112 10 0 chr21 27498515 27498811 -17408759 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr21 27499232 27499260 -17408310 + AT_rich Low_complexity Low_complexity 1 28 0 2439 99 51 5 chr21 27499260 27499653 -17407917 - L1MA1 LINE L1 0 6302 5892 527 204 0 0 chr21 27500008 27500106 -17407464 - MER81 DNA DNA -16 98 1 2146 136 33 14 chr21 27500112 27500480 -17407090 + THE1C LTR MaLR 1 375 0 333 237 14 50 chr21 27500772 27500911 -17406659 + Charlie7 DNA MER1_type 54 187 -2425 812 235 156 57 chr21 27501075 27501138 -17406432 - MLT1H LTR MaLR 0 549 494 2409 85 0 3 chr21 27501138 27501445 -17406125 - AluSp SINE Alu -7 306 1 812 235 156 57 chr21 27501445 27501634 -17405936 - MLT1H LTR MaLR -55 494 325 2001 146 7 13 chr21 27501634 27501936 -17405634 - AluSx SINE Alu -12 300 1 812 235 156 57 chr21 27501936 27502175 -17405395 - MLT1H LTR MaLR -224 325 8 863 213 109 9 chr21 27502194 27502523 -17405047 + Charlie7 DNA MER1_type 1524 1885 -727 1512 171 4 15 chr21 27502527 27502791 -17404779 + AluJo SINE Alu 22 282 -30 2083 147 0 3 chr21 27502883 27503182 -17404388 - AluSx SINE Alu -14 298 1 23 0 0 0 chr21 27503639 27503662 -17403908 + AT_rich Low_complexity Low_complexity 1 23 0 520 253 28 16 chr21 27503789 27503971 -17403599 + L1ME3A LINE L1 5683 5866 -304 462 163 0 0 chr21 27503971 27504051 -17403519 - MADE1 DNA Mariner 0 80 1 2217 230 38 11 chr21 27504479 27505005 -17402565 + MLT1F LTR MaLR 3 542 0 183 343 61 0 chr21 27505494 27505593 -17401977 - MIR SINE MIR 0 262 158 1691 108 12 4 chr21 27505704 27505955 -17401615 - L1MC1 LINE L1 -10 6323 6071 21 36 0 0 chr21 27506112 27506140 -17401430 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 27506257 27506286 -17401284 + AT_rich Low_complexity Low_complexity 1 29 0 358 157 78 39 chr21 27506851 27506953 -17400617 + L1ME2 LINE L1 4330 4435 -1711 370 232 88 41 chr21 27506965 27507159 -17400411 - L1M4 LINE L1 -1825 4321 4119 2417 230 91 47 chr21 27507224 27508149 -17399421 + L1ME2 LINE L1 4493 5376 -788 1825 153 53 0 chr21 27508149 27508430 -17399140 - AluJb SINE Alu -16 296 1 2417 230 91 47 chr21 27508430 27508591 -17398979 + L1ME2 LINE L1 5376 5528 -636 2057 129 0 3 chr21 27508591 27508885 -17398685 + AluSx SINE Alu 1 293 -19 2417 230 91 47 chr21 27508885 27509382 -17398188 + L1ME2 LINE L1 5528 6149 -15 1944 274 59 37 chr21 27509474 27510341 -17397229 + L1ME3A LINE L1 5280 6165 -5 213 320 105 23 chr21 27510360 27510579 -17396991 - L2 LINE L2 -711 2603 2367 1978 146 7 3 chr21 27510680 27510975 -17396595 + AluJb SINE Alu 2 297 -15 2498 94 19 38 chr21 27511391 27511435 -17396135 - THE1B LTR MaLR 0 364 321 2379 81 0 10 chr21 27511435 27511744 -17395826 + AluY SINE Alu 1 306 -5 2498 94 19 38 chr21 27511744 27512070 -17395500 - THE1B LTR MaLR -43 321 1 545 277 75 8 chr21 27512073 27512326 -17395244 - L1MEc LINE L1 -5029 1367 1098 286 183 141 0 chr21 27512320 27512391 -17395179 + L1MC/D LINE L1 5777 5857 -385 * 2948 217 52 72 chr21 27512407 27513447 -17394123 - L1MEc LINE L1 -5293 1103 84 2148 123 152 8 chr21 27513447 27513821 -17393749 - MSTA LTR MaLR 0 428 1 2948 217 52 72 chr21 27513821 27513870 -17393700 - L1MEc LINE L1 -6312 84 36 185 333 0 29 chr21 27514184 27514253 -17393317 + MIR SINE MIR 8 74 -188 248 264 8 80 chr21 27514255 27514380 -17393190 - MIR SINE MIR -1 261 146 680 281 62 9 chr21 27514408 27514618 -17392952 + MIR SINE MIR 37 257 -5 816 302 55 52 chr21 27514707 27515164 -17392406 + LTR16B LTR ERVL 7 464 0 329 239 98 0 chr21 27515657 27515749 -17391821 + MIR SINE MIR 91 191 -71 192 250 191 0 chr21 27515911 27515979 -17391591 - MIR SINE MIR -170 92 12 1794 175 83 3 chr21 27516029 27516367 -17391203 - MLT1A1 LTR MaLR 0 365 1 530 211 142 73 chr21 27516369 27516601 -17390969 - LTR16A1 LTR ERVL -10 447 200 273 29 0 0 chr21 27516935 27516969 -17390601 + (CA)n Simple_repeat Simple_repeat 2 35 0 474 256 233 47 chr21 27517225 27517440 -17390130 - MIR SINE MIR 0 262 8 1523 215 34 3 chr21 27519641 27519994 -17387576 - MLT1A1 LTR MaLR -1 364 1 424 267 139 65 chr21 27520109 27520584 -17386986 - MLT1J LTR MaLR -1 510 1 329 266 58 39 chr21 27521328 27521482 -17386088 - LTR33 LTR ERVL -165 356 200 343 269 0 10 chr21 27521511 27521615 -17385955 - LTR33 LTR ERVL -393 128 26 237 226 16 0 chr21 27522141 27522203 -17385367 - MER20 DNA MER1_type 0 219 157 441 197 168 15 chr21 27522240 27522377 -17385193 - MER20 DNA MER1_type -57 162 5 204 231 0 0 chr21 27522916 27522968 -17384602 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 24 91 0 0 chr21 27522978 27523044 -17384526 + AT_rich Low_complexity Low_complexity 1 66 0 539 289 131 40 chr21 27523377 27523838 -17383732 - MLT1H1 LTR MaLR -7 542 1 2209 176 30 10 chr21 27525135 27525645 -17381925 + LTR27 LTR ERV1 2 490 -11 2217 116 0 3 chr21 27525709 27526011 -17381559 + AluSx SINE Alu 1 301 -11 452 239 14 84 chr21 27526694 27526773 -17380797 + MER5A DNA MER1_type 57 123 -66 2038 103 3 56 chr21 27526773 27527092 -17380478 - AluSc SINE Alu -7 302 1 452 239 14 84 chr21 27527092 27527154 -17380416 + MER5A DNA MER1_type 123 188 -1 264 229 29 29 chr21 27527573 27527643 -17379927 + L2 LINE L2 2995 3064 -208 23 0 0 0 chr21 27528994 27529017 -17378553 + GC_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr21 27529029 27529083 -17378487 + GC_rich Low_complexity Low_complexity 1 54 0 302 266 195 75 chr21 27529134 27529401 -17378169 + L1M2 LINE L1 841 1139 -5710 729 245 62 47 chr21 27532383 27532640 -17374930 + MIR SINE MIR 2 262 0 2240 105 7 3 chr21 27534061 27534367 -17373203 - AluSx SINE Alu -5 307 1 31 0 0 0 chr21 27534910 27534941 -17372629 + AT_rich Low_complexity Low_complexity 1 31 0 213 182 119 63 chr21 27535974 27536112 -17371458 - L2 LINE L2 -1457 1857 1711 378 0 0 0 chr21 27536112 27536154 -17371416 + (TG)n Simple_repeat Simple_repeat 2 43 0 507 268 54 92 chr21 27536223 27536615 -17370955 - MLT1L LTR MaLR -221 394 18 25 0 0 0 chr21 27536789 27536814 -17370756 + AT_rich Low_complexity Low_complexity 1 25 0 615 104 113 0 chr21 27537277 27537350 -17370220 - L1MA7 LINE L1 -54 6237 6174 180 0 0 0 chr21 27537350 27537370 -17370200 + (TG)n Simple_repeat Simple_repeat 1 20 0 615 104 113 0 chr21 27537370 27537411 -17370159 - L1MA7 LINE L1 -117 6174 6110 1007 99 202 34 chr21 27537411 27537690 -17369880 + Tigger7 DNA MER2_type 1 2479 -8 2330 107 0 0 chr21 27538920 27539220 -17368350 + AluSx SINE Alu 3 302 -10 235 323 0 0 chr21 27539458 27539523 -17368047 + MIR3 SINE MIR 98 162 -46 22 80 0 0 chr21 27539980 27540030 -17367540 + AT_rich Low_complexity Low_complexity 1 50 0 923 263 272 15 chr21 27540360 27540885 -17366685 - L2 LINE L2 -938 2376 1717 1285 253 92 19 chr21 27542257 27542845 -17364725 + L1ME1 LINE L1 4005 4635 -1511 766 191 52 5 chr21 27542845 27543039 -17364531 + L1ME1 LINE L1 5310 5512 -654 1077 124 16 21 chr21 27543039 27543225 -17364345 + MER30B DNA MER1_type 1 185 -5 1650 221 52 94 chr21 27543259 27543930 -17363640 + L1ME1 LINE L1 5515 6157 -9 21 36 0 0 chr21 27545051 27545079 -17362491 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 27545919 27545940 -17361630 + AT_rich Low_complexity Low_complexity 1 21 0 1636 150 33 0 chr21 27546937 27547211 -17360359 + MER1B DNA MER1_type 57 339 0 180 171 0 0 chr21 27547303 27547338 -17360232 - L2 LINE L2 -60 3253 3219 346 314 68 22 chr21 27547339 27547582 -17359988 - L2 LINE L2 -242 3030 2777 831 252 66 21 chr21 27547699 27547941 -17359629 - MIR SINE MIR 0 262 10 403 172 117 28 chr21 27547959 27548104 -17359466 - MER112 DNA MER1_type -8 252 95 348 351 52 16 chr21 27548150 27548341 -17359229 - L2 LINE L2 -684 2630 2433 500 306 45 5 chr21 27548926 27549125 -17358445 + MIR SINE MIR 41 247 -15 26 0 0 0 chr21 27550424 27550450 -17357120 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr21 27551588 27551633 -17355937 + AT_rich Low_complexity Low_complexity 1 45 0 2459 116 14 6 chr21 27551825 27552186 -17355384 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr21 27553071 27553112 -17354458 + AT_rich Low_complexity Low_complexity 1 41 0 1876 203 59 63 chr21 27553116 27553672 -17353898 - MLT2B3 LTR ERVL 0 554 1 3367 195 54 34 chr21 27553680 27553917 -17353653 - L1MD2 LINE L1 -40 6319 6088 2187 74 70 0 chr21 27553917 27554201 -17353369 + AluSx SINE Alu 1 304 -8 3367 195 54 34 chr21 27554201 27554505 -17353065 - L1MD2 LINE L1 -271 6088 5792 405 0 0 0 chr21 27554505 27554550 -17353020 + (TG)n Simple_repeat Simple_repeat 2 46 0 3367 195 54 34 chr21 27554550 27554844 -17352726 - L1MD2 LINE L1 -567 5792 5466 2450 47 0 7 chr21 27554895 27555191 -17352379 + AluY SINE Alu 1 294 -17 1830 125 39 11 chr21 27557493 27557773 -17349797 + AluSx SINE Alu 1 288 -24 40 49 0 0 chr21 27558323 27558384 -17349186 + AT_rich Low_complexity Low_complexity 1 61 0 2651 138 13 11 chr21 27558499 27558963 -17348607 - L1MB1 LINE L1 -11 6157 5693 1896 153 28 0 chr21 27558974 27559256 -17348314 + AluJb SINE Alu 1 290 -22 2129 81 16 52 chr21 27560114 27560423 -17347147 - AluY SINE Alu -13 298 1 28 0 0 0 chr21 27560760 27560788 -17346782 + AT_rich Low_complexity Low_complexity 1 28 0 673 238 33 42 chr21 27561592 27561806 -17345764 + MIR SINE MIR 51 262 0 182 36 0 36 chr21 27561838 27561866 -17345704 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1721 112 22 108 chr21 27561868 27562182 -17345388 - AluYb8 SINE Alu -31 287 1 216 0 0 0 chr21 27562443 27562467 -17345103 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 2204 82 26 7 chr21 27564042 27564346 -17343224 - AluY SINE Alu -1 310 1 22 0 0 0 chr21 27564770 27564792 -17342778 + AT_rich Low_complexity Low_complexity 1 22 0 447 298 76 13 chr21 27565074 27565312 -17342258 + MIR SINE MIR 6 258 -4 211 360 126 9 chr21 27565335 27565446 -17342124 - L2 LINE L2 -4 3268 3145 355 256 33 8 chr21 27565503 27565624 -17341946 - L1MC4 LINE L1 -5 8037 7914 298 276 141 35 chr21 27565832 27566202 -17341368 - L1MC4 LINE L1 -140 7902 7494 652 254 123 60 chr21 27566362 27566603 -17340967 - L1MC4 LINE L1 -694 7348 7124 2085 142 0 22 chr21 27566603 27566920 -17340650 - AluSx SINE Alu -2 310 1 652 254 123 60 chr21 27566920 27567329 -17340241 - L1MC4 LINE L1 -918 7124 6657 344 165 2 13 chr21 27567522 27567600 -17339970 - MER6B DNA MER2_type -46 164 87 653 63 11 0 chr21 27567600 27567695 -17339875 + L1PA6 LINE L1 5945 6040 -114 1298 94 0 22 chr21 27567725 27567906 -17339664 + AluSp SINE Alu 135 311 -2 862 29 0 0 chr21 27567909 27568011 -17339559 + L1PA5 LINE L1 6041 6142 -12 477 179 47 0 chr21 27568031 27568137 -17339433 - MER6B DNA MER2_type -165 111 1 1327 248 145 29 chr21 27568268 27568334 -17339236 - L1MC4a LINE L1 -1553 6255 6198 1742 166 25 7 chr21 27568334 27568617 -17338953 - AluJo SINE Alu -24 288 1 1327 248 145 29 chr21 27568617 27569384 -17338186 - L1MC4a LINE L1 -1610 6198 5325 22 35 0 0 chr21 27569510 27569539 -17338031 + AT_rich Low_complexity Low_complexity 1 29 0 2211 111 0 10 chr21 27569578 27569884 -17337686 - AluSx SINE Alu -9 303 1 22 0 0 0 chr21 27570914 27570936 -17336634 + AT_rich Low_complexity Low_complexity 1 22 0 282 240 31 62 chr21 27571707 27571803 -17335767 + MIR SINE MIR 168 260 -2 606 262 125 25 chr21 27571916 27572195 -17335375 + MER46C DNA MER2_type 31 337 -1 363 44 0 0 chr21 27574583 27574628 -17332942 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 195 115 35 chr21 27576491 27576604 -17330966 + MER20 DNA MER1_type 2 123 -96 2497 61 0 0 chr21 27578762 27579059 -17328511 + AluY SINE Alu 1 297 -14 239 320 8 86 chr21 27581973 27582005 -17325565 + MIR SINE MIR 20 53 -209 2282 100 3 0 chr21 27582005 27582306 -17325264 - AluSx SINE Alu -10 302 1 239 320 8 86 chr21 27582306 27582401 -17325169 + MIR SINE MIR 53 137 -125 1644 113 46 99 chr21 27582515 27582664 -17324906 - AluSg SINE Alu -41 269 141 2305 113 0 3 chr21 27582664 27582965 -17324605 - AluSx SINE Alu -12 300 1 1644 113 46 99 chr21 27582965 27583099 -17324471 - AluSg SINE Alu -169 141 1 811 325 100 50 chr21 27584012 27584940 -17322630 - L2 LINE L2 -256 3016 2036 343 167 14 0 chr21 27584955 27585027 -17322543 - LTR30 LTR ERV1 -98 624 552 1750 79 152 0 chr21 27585028 27585417 -17322153 - LTR12 LTR ERV1 -406 2032 1 5942 76 4 3 chr21 27585417 27586190 -17321380 - HERV9 LTR ERV1 0 8399 7626 2028 185 117 71 chr21 27586188 27586916 -17320654 - Harlequin LTR ERV1 -5156 1740 980 * 6426 85 12 8 chr21 27586899 27587761 -17319809 - Harlequin LTR ERV1 -3455 4944 4080 934 37 0 0 chr21 27587768 27587875 -17319695 - Harlequin LTR ERV1 -5260 3139 3033 2336 110 0 0 chr21 27588412 27588781 -17318789 + AluSg SINE Alu 1 369 0 229 288 50 56 chr21 27588849 27589009 -17318561 + L1ME LINE L1 5512 5670 -451 22 0 0 0 chr21 27589029 27589051 -17318519 + AT_rich Low_complexity Low_complexity 1 22 0 4241 93 5 113 chr21 27589537 27590280 -17317290 + MER4A LTR ERV1 2 664 0 551 243 40 134 chr21 27590449 27590515 -17317055 + L2 LINE L2 3009 3080 -233 2357 97 0 3 chr21 27590515 27590824 -17316746 + AluSx SINE Alu 1 308 -4 551 243 40 134 chr21 27590824 27591086 -17316484 + L2 LINE L2 3080 3306 -7 1357 139 69 56 chr21 27592201 27592504 -17315066 - MER33 DNA MER1_type 0 324 18 2550 168 35 17 chr21 27592538 27592997 -17314573 + MLT1C LTR MaLR 1 467 0 211 296 23 0 chr21 27593031 27593119 -17314451 + CT-rich Low_complexity Low_complexity 2 91 0 326 321 18 28 chr21 27593657 27593687 -17313883 - MER91C DNA MER1_type -30 110 81 2333 102 55 25 chr21 27593687 27594051 -17313519 + THE1C LTR MaLR 1 375 0 326 321 18 28 chr21 27594051 27594129 -17313441 - MER91C DNA MER1_type -59 81 3 372 259 126 17 chr21 27594392 27594566 -17313004 + MLT1K LTR MaLR 396 588 0 980 146 12 24 chr21 27595351 27595515 -17312055 + FRAM SINE Alu 1 156 -20 201 39 0 0 chr21 27595925 27595951 -17311619 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 350 259 54 9 chr21 27596663 27596775 -17310795 - MLT1H LTR MaLR 0 549 433 2119 164 96 37 chr21 27596880 27597288 -17310282 + MSTB1 LTR MaLR 1 432 0 401 308 186 8 chr21 27597288 27597535 -17310035 - MLT1H LTR MaLR -258 291 1 266 0 0 29 chr21 27597734 27597769 -17309801 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 395 303 115 45 chr21 27598131 27598418 -17309152 + L1ME4a LINE L1 5593 5899 -222 558 335 72 16 chr21 27599161 27599465 -17308105 + MLT1I LTR MaLR 1 321 -88 1989 180 102 64 chr21 27599465 27599889 -17307681 + MLT2B1 LTR ERVL 1 448 -72 2039 132 46 35 chr21 27599889 27600260 -17307310 - THE1C LTR MaLR 0 375 1 1989 180 102 64 chr21 27600260 27600336 -17307234 + MLT2B1 LTR ERVL 448 520 0 518 196 0 0 chr21 27600337 27600429 -17307141 + MLT1I LTR MaLR 318 409 0 296 270 230 0 chr21 27601651 27601751 -17305819 - MIR SINE MIR -92 170 48 214 230 68 27 chr21 27601791 27601865 -17305705 + MER5B DNA MER1_type 97 173 -5 1002 186 16 21 chr21 27601877 27602065 -17305505 - MER5A DNA MER1_type 0 189 3 2225 97 3 7 chr21 27602710 27603008 -17304562 - AluSc SINE Alu -12 297 1 222 294 0 0 chr21 27603526 27603577 -17303993 + MIR SINE MIR 42 92 -116 2313 116 59 34 chr21 27603842 27604197 -17303373 - THE1B LTR MaLR 0 364 1 657 237 103 22 chr21 27604406 27604638 -17302932 - MER112 DNA MER1_type -4 256 6 1442 181 62 81 chr21 27604750 27604924 -17302646 - MLT1A1 LTR MaLR -1 364 188 2146 129 0 7 chr21 27604924 27605227 -17302343 + AluSx SINE Alu 1 301 -11 1442 181 62 81 chr21 27605227 27605423 -17302147 - MLT1A1 LTR MaLR -177 188 1 2278 114 0 0 chr21 27605669 27605967 -17301603 - AluSx SINE Alu -14 298 1 1858 112 4 15 chr21 27607922 27608182 -17299388 + AluSx SINE Alu 36 292 -20 2645 167 76 13 chr21 27609357 27609883 -17297687 + MER89 LTR ERV1 1 559 0 2229 92 0 3 chr21 27610695 27611025 -17296545 - AluSg SINE Alu 0 329 1 759 206 0 19 chr21 27611527 27611682 -17295888 - MER5A DNA MER1_type -37 152 1 309 89 0 0 chr21 27611725 27611770 -17295800 + (TG)n Simple_repeat Simple_repeat 2 46 0 243 271 17 34 chr21 27612546 27612664 -17294906 - L1MC5 LINE L1 -35 7926 7811 760 196 111 36 chr21 27612904 27613129 -17294441 + MER89 LTR ERV1 1 242 -317 892 251 79 39 chr21 27613129 27613272 -17294298 - L1MC5 LINE L1 -216 7745 7609 2639 55 0 3 chr21 27613272 27613584 -17293986 - AluY SINE Alu 0 311 1 892 251 79 39 chr21 27613584 27613898 -17293672 - L1MC5 LINE L1 -352 7609 7270 804 225 65 66 chr21 27613966 27614320 -17293250 - L1MC4 LINE L1 -740 7221 6903 227 285 44 51 chr21 27614517 27614654 -17292916 - L1ME4a LINE L1 -27 6094 5959 1989 304 143 43 chr21 27614676 27616459 -17291111 + L2 LINE L2 1037 2641 -672 2317 104 0 0 chr21 27616459 27616758 -17290812 - AluSx SINE Alu 0 312 14 1989 304 143 43 chr21 27616758 27616881 -17290689 + L2 LINE L2 2641 2750 -563 1988 149 98 0 chr21 27616881 27617197 -17290373 - MER7A DNA MER2_type -1 345 1 1989 304 143 43 chr21 27617197 27617235 -17290335 + L2 LINE L2 2750 2783 -530 4419 83 24 0 chr21 27617235 27617776 -17289794 - MER41A LTR ERV1 0 554 1 1989 304 143 43 chr21 27617776 27617885 -17289685 + L2 LINE L2 2783 3313 0 260 379 38 8 chr21 27617910 27618042 -17289528 - L2 LINE L2 -14 3258 3123 373 319 148 23 chr21 27618222 27618607 -17288963 - L1ME4a LINE L1 -2116 5692 5260 616 319 48 26 chr21 27618973 27619324 -17288246 + MLT1J LTR MaLR 60 418 -93 482 140 40 40 chr21 27619338 27619438 -17288132 - U13 snRNA snRNA 0 104 5 1956 147 10 16 chr21 27619998 27620310 -17287260 - AluSx SINE Alu -2 310 1 7219 139 5 8 chr21 27621308 27622139 -17285431 - L1PA10 LINE L1 -5 6163 5331 4613 76 8 34 chr21 27622139 27622761 -17284809 - SVA Other Other -2 1384 779 7219 139 5 8 chr21 27622761 27623836 -17283734 - L1PA10 LINE L1 -837 5331 4250 1922 162 0 3 chr21 27624456 27624752 -17282818 + AluJo SINE Alu 1 295 -17 617 318 25 25 chr21 27624901 27625140 -17282430 - MIR SINE MIR -5 257 19 2285 122 3 0 chr21 27625185 27625496 -17282074 - AluSp SINE Alu 0 313 2 599 351 109 0 chr21 27626226 27626565 -17281005 - L3 LINE CR1 -4 1573 1198 435 162 0 0 chr21 27626839 27626907 -17280663 - MER116 DNA Mariner -7 73 6 269 339 18 18 chr21 27626921 27627033 -17280537 - MIR SINE MIR -121 141 30 2060 139 50 68 chr21 27627186 27627568 -17280002 + THE1C LTR MaLR 1 375 0 399 277 47 14 chr21 27627570 27627718 -17279852 + MIR SINE MIR 70 222 -40 357 199 39 105 chr21 27627786 27627967 -17279603 - MER58C DNA MER1_type 0 215 47 2452 267 118 42 chr21 27627971 27628135 -17279435 + L2 LINE L2 1345 1495 -1819 1667 170 14 0 chr21 27628135 27628417 -17279153 - AluJb SINE Alu -26 286 1 2452 267 118 42 chr21 27628417 27629294 -17278276 + L2 LINE L2 1495 2465 -849 282 258 75 0 chr21 27629337 27629348 -17278222 - L1MA10 LINE L1 -41 6293 6283 1891 239 84 12 chr21 27629348 27629930 -17277640 - L1ME1 LINE L1 -44 6122 5499 815 272 96 4 chr21 27629938 27630188 -17277382 + L2 LINE L2 2460 2732 -582 1398 171 45 16 chr21 27630188 27630434 -17277136 - AluJo SINE Alu -17 295 43 728 259 148 18 chr21 27630434 27630848 -17276722 + L2 LINE L2 2724 3187 -126 576 250 21 21 chr21 27630921 27631065 -17276505 + L2 LINE L2 3152 3295 -18 233 272 296 24 chr21 27631441 27631566 -17276004 + MER5A DNA MER1_type 1 159 -30 1796 168 77 60 chr21 27631754 27632206 -17275364 + MLT1C LTR MaLR 2 461 -6 226 321 19 6 chr21 27632346 27632508 -17275062 + L1ME3A LINE L1 4783 4946 -1200 571 214 114 14 chr21 27632654 27632794 -17274776 - MIR SINE MIR -107 155 2 790 301 85 21 chr21 27632835 27633659 -17273911 + L1ME3A LINE L1 5006 5886 -284 241 167 0 83 chr21 27633665 27633761 -17273809 + A-rich Low_complexity Low_complexity 5 92 0 2886 67 11 11 chr21 27633783 27634158 -17273412 + THE1C LTR MaLR 1 375 0 2544 116 12 8 chr21 27634158 27634245 -17273325 + THE1C-int LTR MaLR 1 86 -1494 4472 144 78 4 chr21 27634245 27635014 -17272556 - LTR1B LTR ERV1 0 826 1 2544 116 12 8 chr21 27635014 27635585 -17271985 + THE1C-int LTR MaLR 86 701 -879 748 146 18 23 chr21 27635595 27635766 -17271804 + CT-rich Low_complexity Low_complexity 4 173 0 1603 197 13 0 chr21 27635775 27636079 -17271491 - AluJo SINE Alu -4 308 1 407 89 0 0 chr21 27636079 27636135 -17271435 - MSTB LTR MaLR -370 56 1 3265 147 13 53 chr21 27636966 27637424 -17270146 - LTR26 LTR ERV1 0 603 175 3140 171 19 69 chr21 27637424 27638151 -17269419 - LTR8 LTR ERV1 0 691 1 3265 147 13 53 chr21 27638151 27638318 -17269252 - LTR26 LTR ERV1 -428 175 3 22 35 0 0 chr21 27638642 27638671 -17268899 + AT_rich Low_complexity Low_complexity 1 29 0 2112 140 7 3 chr21 27638691 27638998 -17268572 + AluSx SINE Alu 1 308 -4 205 311 33 0 chr21 27639460 27639521 -17268049 + L2 LINE L2 3223 3285 -28 1525 187 56 3 chr21 27640767 27640884 -17266686 + AluJo SINE Alu 1 110 -202 441 54 0 0 chr21 27640884 27640940 -17266630 + (TA)n Simple_repeat Simple_repeat 1 56 0 1525 187 56 3 chr21 27640940 27641106 -17266464 + AluJo SINE Alu 110 299 -13 1980 174 34 18 chr21 27642709 27643093 -17264477 + MLT1B LTR MaLR 1 390 0 2340 95 0 9 chr21 27643252 27643567 -17264003 - AluSx SINE Alu 0 312 1 372 316 29 6 chr21 27643885 27644056 -17263514 + LTR16C LTR ERVL 317 491 0 581 272 66 25 chr21 27644688 27644910 -17262660 + MIR SINE MIR 17 244 -18 5385 61 96 0 chr21 27645119 27645856 -17261714 + L1PA7 LINE L1 5347 6154 0 2647 102 3 0 chr21 27645886 27646268 -17261302 + L1PB1 LINE L1 5769 6151 0 2273 206 24 5 chr21 27646291 27646844 -17260726 - L1MC1 LINE L1 -291 6042 5480 261 293 57 49 chr21 27647075 27647198 -17260372 + MIR SINE MIR 45 168 -94 2422 78 3 0 chr21 27647717 27648025 -17259545 - AluY SINE Alu -2 309 1 21 82 0 0 chr21 27649310 27649359 -17258211 + AT_rich Low_complexity Low_complexity 1 49 0 239 217 0 0 chr21 27649384 27649430 -17258140 - L1MD2 LINE L1 -94 6265 6220 * 1338 184 142 101 chr21 27649426 27649970 -17257600 - L1MD1 LINE L1 -85 6157 5592 22 0 0 0 chr21 27649970 27649992 -17257578 + AT_rich Low_complexity Low_complexity 1 22 0 216 135 0 0 chr21 27650011 27650048 -17257522 + (T)n Simple_repeat Simple_repeat 1 37 0 7930 12 0 0 chr21 27650051 27651248 -17256322 - L1PA2 LINE L1 0 6155 4959 10301 21 0 0 chr21 27651248 27652497 -17255073 + L1PA2 LINE L1 3695 4943 -1203 664 190 6 25 chr21 27652533 27652691 -17254879 - L1MD1 LINE L1 -766 5593 5439 276 30 0 0 chr21 27652978 27653011 -17254559 + (GA)n Simple_repeat Simple_repeat 2 34 0 2398 169 41 16 chr21 27654170 27654684 -17252886 - L1MC2 LINE L1 0 6344 5818 217 373 63 28 chr21 27654687 27654829 -17252741 - L2 LINE L2 0 3272 3126 334 297 0 0 chr21 27655241 27655332 -17252238 - MIR3 SINE MIR -7 201 111 311 68 373 0 chr21 27655362 27655421 -17252149 - AluSg SINE Alu -174 126 46 237 77 19 19 chr21 27655410 27655462 -17252108 + Alu SINE Alu 257 308 0 * 2173 102 3 0 chr21 27655825 27656190 -17251380 - AluSq SINE Alu 0 366 1 283 119 24 48 chr21 27656599 27656683 -17250887 + CT-rich Low_complexity Low_complexity 4 85 0 1636 175 29 0 chr21 27656880 27657160 -17250410 - AluJb SINE Alu -14 298 11 2111 125 23 0 chr21 27657179 27657484 -17250086 - AluSx SINE Alu 0 312 1 1958 212 95 58 chr21 27658218 27658910 -17248660 - MER50 LTR ERV1 -7 727 10 757 156 24 107 chr21 27659346 27659551 -17248019 - MER5A DNA MER1_type -1 188 1 658 238 94 5 chr21 27660118 27660341 -17247229 - MLT2C1 LTR ERVL -154 243 1 1224 157 33 128 chr21 27660963 27661037 -17246533 + MER4C LTR ERV1 1 80 -385 426 20 0 0 chr21 27661037 27661088 -17246482 + (CA)n Simple_repeat Simple_repeat 2 52 0 1224 157 33 128 chr21 27661088 27661640 -17245930 + MER4C LTR ERV1 80 465 0 1929 121 8 0 chr21 27662239 27662516 -17245054 + AluSx SINE Alu 23 301 0 246 254 45 119 chr21 27663171 27663305 -17244265 + MIR3 SINE MIR 82 205 -3 2127 141 33 28 chr21 27664043 27664405 -17243165 + THE1B LTR MaLR 1 364 0 1699 138 140 22 chr21 27664818 27665323 -17242247 - MER51B LTR ERV1 0 377 1 794 260 11 0 chr21 27665399 27665580 -17241990 + MER63A DNA MER1_type 2 184 -26 449 250 9 0 chr21 27665854 27665966 -17241604 - MER70B LTR ERVL -12 566 454 1849 122 6 16 chr21 27666921 27667275 -17240295 - MER4A LTR ERV1 0 664 256 824 88 20 34 chr21 27667250 27667397 -17240173 - MER4A LTR ERV1 -519 145 1 * 253 279 10 10 chr21 27667413 27667517 -17240053 + L1ME LINE L1 5597 5700 -421 23 0 0 0 chr21 27668605 27668628 -17238942 + AT_rich Low_complexity Low_complexity 1 23 0 1779 189 7 0 chr21 27668783 27669084 -17238486 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr21 27669096 27669126 -17238444 + AT_rich Low_complexity Low_complexity 1 30 0 29 70 0 0 chr21 27669200 27669257 -17238313 + AT_rich Low_complexity Low_complexity 1 57 0 32 57 0 0 chr21 27669293 27669346 -17238224 + AT_rich Low_complexity Low_complexity 1 53 0 264 258 47 47 chr21 27669479 27669669 -17237901 + L1ME4a LINE L1 4860 5049 -1097 186 43 0 0 chr21 27669875 27669898 -17237672 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5095 50 0 0 chr21 27669898 27670514 -17237056 - L1PA5 LINE L1 -16 6138 5523 380 320 72 15 chr21 27670746 27671080 -17236490 + L1ME4a LINE L1 5541 5893 -228 305 254 162 14 chr21 27671184 27671326 -17236244 + HAL1b LINE L1 1184 1346 -2 1686 185 3 7 chr21 27672107 27672410 -17235160 - AluJb SINE Alu -10 302 1 1178 64 32 0 chr21 27672992 27673149 -17234421 + THE1C LTR MaLR 1 162 -213 2534 10 0 0 chr21 27673151 27673439 -17234131 - L1PA2 LINE L1 0 6155 5868 651 12 0 0 chr21 27673440 27673520 -17234050 + L1P1 LINE L1 5473 5552 -603 1188 152 37 0 chr21 27673520 27673737 -17233833 + THE1C LTR MaLR 151 375 0 4168 80 0 0 chr21 27674135 27674696 -17232874 + L1PB1 LINE L1 5586 6146 -5 326 324 64 48 chr21 27674773 27675119 -17232451 - L1ME LINE L1 -516 5605 5256 29 78 0 0 chr21 27675279 27675343 -17232227 + AT_rich Low_complexity Low_complexity 1 64 0 291 260 0 14 chr21 27676183 27676256 -17231314 + (CA)n Simple_repeat Simple_repeat 1 72 0 234 0 0 0 chr21 27676348 27676374 -17231196 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1865 161 3 7 chr21 27676375 27676661 -17230909 - AluJb SINE Alu -25 287 3 33 56 0 0 chr21 27676833 27676887 -17230683 + AT_rich Low_complexity Low_complexity 1 54 0 2541 77 0 0 chr21 27677138 27677449 -17230121 + AluY SINE Alu 1 311 0 1042 266 48 92 chr21 27677995 27678113 -17229457 - HAL1b LINE L1 -635 713 591 2066 111 13 38 chr21 27678113 27678428 -17229142 - AluSg SINE Alu -3 307 1 1042 266 48 92 chr21 27678428 27679013 -17228557 - HAL1b LINE L1 -757 591 41 197 276 38 129 chr21 27680077 27680287 -17227283 - MIR SINE MIR -23 239 49 2102 119 13 7 chr21 27680311 27680613 -17226957 - AluSx SINE Alu -8 304 1 525 166 41 0 chr21 27680677 27680822 -17226748 + (TA)n Simple_repeat Simple_repeat 2 152 0 2204 126 3 0 chr21 27680861 27681162 -17226408 + AluSp SINE Alu 1 302 -11 2184 117 0 7 chr21 27681423 27681721 -17225849 + AluSg SINE Alu 1 296 -14 2300 104 0 0 chr21 27681776 27682075 -17225495 - AluSx SINE Alu -13 299 1 420 317 44 11 chr21 27682225 27682408 -17225162 - MER5A DNA MER1_type 0 189 1 1379 150 0 0 chr21 27682715 27682915 -17224655 - MLT2B1 LTR ERVL -320 200 1 29 47 0 0 chr21 27686664 27686707 -17220863 + AT_rich Low_complexity Low_complexity 1 43 0 356 285 73 36 chr21 27686964 27687101 -17220469 + MIR3 SINE MIR 3 144 -64 531 263 27 0 chr21 27687117 27687267 -17220303 - MIR SINE MIR -49 213 57 570 15 0 0 chr21 27687469 27687536 -17220034 + (TC)n Simple_repeat Simple_repeat 1 67 0 1413 172 4 41 chr21 27687756 27688024 -17219546 - AluJo SINE Alu -32 280 23 27 0 0 0 chr21 27688132 27688159 -17219411 + AT_rich Low_complexity Low_complexity 1 27 0 834 192 36 87 chr21 27689076 27689295 -17218275 - MER3 DNA MER1_type -1 208 1 1288 259 143 21 chr21 27690171 27690599 -17216971 + MLT1D LTR MaLR 26 505 0 2257 105 0 0 chr21 27690886 27691180 -17216390 - AluSg1 SINE Alu -15 294 1 1068 268 84 38 chr21 27691523 27691617 -17215953 - L1MC4a LINE L1 -1878 5930 5842 2345 79 0 25 chr21 27691617 27691932 -17215638 - AluY SINE Alu -4 307 1 1068 268 84 38 chr21 27691932 27692207 -17215363 - L1MC4a LINE L1 -1966 5842 5544 1823 214 82 89 chr21 27692283 27692843 -17214727 - MLT1E LTR MaLR -5 588 33 262 246 105 18 chr21 27692889 27693003 -17214567 - L1MC4a LINE L1 -2392 5416 5293 236 297 102 43 chr21 27693050 27693444 -17214126 - L1MC4a LINE L1 -985 5161 4745 233 257 90 75 chr21 27693508 27693712 -17213858 - L1MC4a LINE L1 -1487 4659 4446 2400 107 0 0 chr21 27693712 27694021 -17213549 - AluSx SINE Alu -3 309 1 233 257 90 75 chr21 27694021 27694162 -17213408 - L1MC4a LINE L1 -1700 4446 4309 351 332 53 21 chr21 27694176 27694366 -17213204 - L2 LINE L2 0 3313 3118 254 299 146 22 chr21 27694389 27694526 -17213044 + L2 LINE L2 3118 3271 -1 21 71 0 0 chr21 27694603 27694645 -17212925 + AT_rich Low_complexity Low_complexity 1 42 0 432 283 36 14 chr21 27695275 27695413 -17212157 - MIR SINE MIR 0 262 122 682 130 14 192 chr21 27695573 27695719 -17211851 - MLT1E LTR MaLR -433 160 37 1948 146 19 13 chr21 27695878 27696187 -17211383 - AluJb SINE Alu -1 311 1 2059 118 7 7 chr21 27697170 27697466 -17210104 - AluSq SINE Alu -13 300 5 2216 101 3 0 chr21 27698140 27698428 -17209142 - AluSq SINE Alu -24 289 1 220 261 87 43 chr21 27698486 27698578 -17208992 + L3 LINE CR1 1477 1572 -5 2213 112 3 13 chr21 27699084 27699398 -17208172 - AluY SINE Alu 0 311 1 278 311 55 81 chr21 27699590 27699834 -17207736 - L3b LINE CR1 -94 1489 1250 2204 99 3 0 chr21 27699834 27700179 -17207391 - AluSq SINE Alu 0 346 1 278 311 55 81 chr21 27700179 27700206 -17207364 - L3b LINE CR1 -333 1250 1224 805 319 76 38 chr21 27701256 27701780 -17205790 - Tigger8 DNA MER2_type -116 550 7 328 289 78 76 chr21 27702303 27702506 -17205064 - MLT1L LTR MaLR -42 573 372 2415 50 3 10 chr21 27702506 27702804 -17204766 - AluY SINE Alu -15 296 1 328 289 78 76 chr21 27702804 27702998 -17204572 - MLT1L LTR MaLR -243 372 71 1034 192 54 16 chr21 27703615 27703927 -17203643 + LTR52 LTR ERVL 3 418 -3 252 54 54 0 chr21 27704354 27704391 -17203179 - MLT2D LTR ERVL -10 505 467 261 0 0 0 chr21 27704405 27704434 -17203136 + (CA)n Simple_repeat Simple_repeat 1 29 0 2112 171 9 3 chr21 27704443 27704789 -17202781 - MLT2D LTR ERVL -66 348 1 1516 201 17 94 chr21 27705191 27705595 -17201975 - MLT1A2 LTR MaLR 0 374 2 2429 57 0 10 chr21 27706243 27706541 -17201029 + AluSq SINE Alu 1 295 -18 2160 158 36 34 chr21 27707928 27708480 -17199090 - MLT2A2 LTR ERVL 0 554 1 229 167 42 0 chr21 27709027 27709075 -17198495 + CT-rich Low_complexity Low_complexity 2 51 0 27 0 0 0 chr21 27709247 27709274 -17198296 + AT_rich Low_complexity Low_complexity 1 27 0 378 241 121 78 chr21 27709337 27709503 -17198067 + MIR SINE MIR 83 255 -7 271 315 215 0 chr21 27709865 27710014 -17197556 - MIR SINE MIR -51 211 31 2191 107 3 0 chr21 27710220 27710509 -17197061 - AluSc SINE Alu -19 290 1 255 310 163 8 chr21 27710698 27710827 -17196743 - L2 LINE L2 -1 3312 3164 503 56 22 124 chr21 27711085 27711174 -17196396 - MADE1 DNA Mariner 0 80 1 2068 127 0 3 chr21 27711436 27711720 -17195850 - AluJb SINE Alu -19 293 11 2367 76 3 0 chr21 27712331 27712622 -17194948 - AluSc SINE Alu -17 292 1 2193 141 39 30 chr21 27714833 27715194 -17192376 - THE1B LTR MaLR 0 364 1 2429 57 3 3 chr21 27715287 27715584 -17191986 - AluY SINE Alu -14 297 1 3775 161 41 9 chr21 27718606 27719287 -17188283 + MER50 LTR ERV1 9 711 -23 294 231 135 10 chr21 27719327 27719431 -17188139 + MIR SINE MIR 146 262 0 614 175 140 75 chr21 27719532 27719760 -17187810 + ORSL DNA AcHobo 10 252 -23 627 272 31 36 chr21 27719848 27720072 -17187498 + MIR SINE MIR 29 251 -11 23 33 0 0 chr21 27720917 27720947 -17186623 + AT_rich Low_complexity Low_complexity 1 30 0 975 145 31 6 chr21 27721284 27721443 -17186127 + THE1C LTR MaLR 213 375 0 938 325 77 48 chr21 27721499 27722192 -17185378 + L2 LINE L2 2017 2729 -585 251 91 0 23 chr21 27722576 27722620 -17184950 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 236 224 112 14 chr21 27722802 27722919 -17184651 + MIR SINE MIR 39 166 -96 180 0 0 0 chr21 27722952 27722972 -17184598 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 364 335 84 12 chr21 27722979 27723230 -17184340 + L2 LINE L2 2372 2640 -674 1967 93 0 4 chr21 27723243 27723501 -17184069 - AluSq SINE Alu -54 259 3 187 370 32 32 chr21 27723635 27723789 -17183781 + L2 LINE L2 3139 3292 -21 1973 94 0 4 chr21 27724389 27724643 -17182927 + AluSq SINE Alu 37 289 -24 180 0 0 0 chr21 27724654 27724674 -17182896 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 183 139 0 0 chr21 27724751 27724787 -17182783 + (TG)n Simple_repeat Simple_repeat 2 37 0 1372 183 49 107 chr21 27727142 27727589 -17179981 - MLT1C LTR MaLR -13 454 34 3609 108 58 13 chr21 27727605 27727629 -17179941 - L1MA3 LINE L1 0 6305 6284 231 114 0 0 chr21 27727629 27727664 -17179906 + (TA)n Simple_repeat Simple_repeat 2 36 0 3609 108 58 13 chr21 27727664 27728186 -17179384 - L1MA3 LINE L1 -21 6284 5734 216 182 30 15 chr21 27729049 27729115 -17178455 + A-rich Low_complexity Low_complexity 2 68 0 207 69 0 0 chr21 27729551 27729580 -17177990 + (TC)n Simple_repeat Simple_repeat 2 30 0 288 278 0 0 chr21 27730267 27730339 -17177231 + L2 LINE L2 3242 3313 0 24 32 0 0 chr21 27730974 27731005 -17176565 + AT_rich Low_complexity Low_complexity 1 31 0 2257 81 0 0 chr21 27731068 27731352 -17176218 - AluSg SINE Alu 0 310 27 2057 107 10 30 chr21 27732291 27732590 -17174980 + AluSx SINE Alu 1 293 -19 958 231 66 0 chr21 27734433 27734689 -17172881 - MLT1H LTR MaLR -264 285 13 222 156 0 0 chr21 27735316 27735361 -17172209 + A-rich Low_complexity Low_complexity 1 45 0 2009 135 9 25 chr21 27735388 27735706 -17171864 + AluSq SINE Alu 1 313 0 261 255 214 48 chr21 27736767 27736912 -17170658 + MIR SINE MIR 94 262 0 1349 216 38 14 chr21 27737311 27737676 -17169894 - MER96B DNA MER1_type? -36 381 8 1724 97 0 4 chr21 27737702 27737929 -17169641 + AluSg SINE Alu 1 226 -84 1665 55 9 5 chr21 27737942 27738161 -17169409 - L1PA11 LINE L1 -19 6155 5936 932 210 52 48 chr21 27738180 27738470 -17169100 - MLT1D LTR MaLR -212 293 3 224 227 136 36 chr21 27738874 27738984 -17168586 - L3b LINE CR1 -188 1395 1275 800 203 75 56 chr21 27739198 27739464 -17168106 - MER58B DNA MER1_type -3 338 68 234 0 0 0 chr21 27741485 27741511 -17166059 + (T)n Simple_repeat Simple_repeat 1 26 0 2231 102 0 7 chr21 27741658 27741953 -17165617 + AluSx SINE Alu 1 293 -19 423 323 20 36 chr21 27742514 27742765 -17164805 + MLT1F LTR MaLR 1 247 -308 1945 232 107 29 chr21 27742773 27743317 -17164253 + MER77 LTR ERV1 9 594 -11 306 0 0 0 chr21 27743319 27743353 -17164217 + (CA)n Simple_repeat Simple_repeat 2 35 0 443 93 0 13 chr21 27743356 27743431 -17164139 + (GA)n Simple_repeat Simple_repeat 2 75 0 424 233 119 46 chr21 27743464 27743696 -17163874 + MLT1F LTR MaLR 313 590 0 266 363 132 0 chr21 27743801 27744005 -17163565 + MLT1F-int LTR MaLR 290 520 -1215 619 130 80 0 chr21 27744009 27744109 -17163461 + MER61E LTR ERV1 191 298 -271 256 260 36 152 chr21 27744768 27745130 -17162440 + MLT1F-int LTR MaLR 1028 1347 -24 1328 279 53 5 chr21 27745986 27746399 -17161171 - LTR16A LTR ERVL 0 450 18 219 294 59 12 chr21 27747085 27747170 -17160400 - MIR SINE MIR -54 208 120 294 303 34 0 chr21 27747247 27747336 -17160234 - MIR SINE MIR -121 141 50 1632 153 47 43 chr21 27747689 27747990 -17159580 - AluJb SINE Alu -10 302 1 298 315 9 18 chr21 27749612 27749723 -17157847 - MLT1J LTR MaLR -176 335 226 520 27 27 0 chr21 27749814 27749888 -17157682 + (TA)n Simple_repeat Simple_repeat 1 76 0 341 314 36 60 chr21 27750073 27750404 -17157166 - MLT1J2 LTR MaLR -127 323 1 560 301 49 30 chr21 27750460 27750886 -17156684 - L1ME LINE L1 -448 5714 5281 2130 99 0 48 chr21 27750993 27751305 -17156265 - AluSg SINE Alu -13 297 1 304 211 0 0 chr21 27751319 27751371 -17156199 - FLAM_A SINE Alu -21 112 61 503 175 51 7 chr21 27751479 27751616 -17155954 - L1MA8 LINE L1 -10 6281 6139 1209 339 59 41 chr21 27751621 27751858 -17155712 - L1ME LINE L1 -1229 4917 4686 1580 179 103 83 chr21 27751858 27752306 -17155264 + MSTB2 LTR MaLR 1 457 0 1209 339 59 41 chr21 27752306 27753184 -17154386 - L1ME LINE L1 -1460 4686 3782 29 28 0 0 chr21 27753366 27753402 -17154168 + AT_rich Low_complexity Low_complexity 1 36 0 242 187 13 67 chr21 27754154 27754229 -17153341 + LTR33 LTR ERVL 76 146 -375 462 155 62 16 chr21 27754438 27754567 -17153003 - L1MA8 LINE L1 -4 6287 6153 352 270 27 0 chr21 27754606 27754717 -17152853 + LTR33 LTR ERVL 399 512 -9 365 340 7 20 chr21 27755140 27755293 -17152277 - MIR SINE MIR -95 167 17 538 305 85 47 chr21 27755510 27755672 -17151898 + LTR33 LTR ERVL 12 166 -355 2097 118 139 13 chr21 27755672 27756052 -17151518 - MSTA LTR MaLR 0 428 1 9156 148 7 45 chr21 27756052 27757692 -17149878 - MSTA-int LTR MaLR 0 1580 3 1680 180 120 50 chr21 27757694 27757918 -17149652 - MSTA LTR MaLR 0 428 221 2059 144 0 0 chr21 27757918 27758203 -17149367 - AluSx SINE Alu -23 289 5 1680 180 120 50 chr21 27758203 27758378 -17149192 - MSTA LTR MaLR -207 221 1 538 305 85 47 chr21 27758378 27758575 -17148995 + LTR33 LTR ERVL 166 389 -132 236 367 122 11 chr21 27759899 27760079 -17147491 - L3b LINE CR1 -85 1498 1299 195 204 0 0 chr21 27760159 27760203 -17147367 + CT-rich Low_complexity Low_complexity 2 45 0 336 279 45 45 chr21 27762320 27762474 -17145096 + MIR SINE MIR 15 168 -94 435 213 134 49 chr21 27762609 27762753 -17144817 + MIR SINE MIR 59 215 -47 244 146 0 0 chr21 27763125 27763166 -17144404 + MER94 DNA DNA 12 52 -82 486 366 60 55 chr21 27765835 27766149 -17141421 + L2 LINE L2 2858 3176 -96 2176 114 47 36 chr21 27766149 27766509 -17141061 + THE1B LTR MaLR 1 364 0 486 366 60 55 chr21 27766509 27766579 -17140991 + L2 LINE L2 3176 3244 -28 1606 126 39 11 chr21 27768251 27768537 -17139033 + L1MB1 LINE L1 5875 6168 0 21 36 0 0 chr21 27768818 27768846 -17138724 + AT_rich Low_complexity Low_complexity 1 28 0 1536 187 48 12 chr21 27769159 27769496 -17138074 - MER47A DNA MER2_type 0 366 18 252 284 176 7 chr21 27769736 27769854 -17137716 - MIR SINE MIR -61 147 22 2223 102 7 0 chr21 27770923 27771218 -17136352 - AluSc SINE Alu -12 297 1 500 340 44 10 chr21 27771254 27771457 -17136113 + MIR SINE MIR 33 242 -20 189 0 0 0 chr21 27771528 27771549 -17136021 + (T)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chr21 27771985 27772008 -17135562 + (TG)n Simple_repeat Simple_repeat 1 23 0 547 314 81 0 chr21 27777394 27777579 -17129991 - MIR3 SINE MIR -6 202 3 21 82 0 0 chr21 27778827 27778876 -17128694 + AT_rich Low_complexity Low_complexity 1 49 0 412 111 0 32 chr21 27778997 27779060 -17128510 - AluJb SINE Alu -190 122 62 24 0 0 0 chr21 27779319 27779343 -17128227 + AT_rich Low_complexity Low_complexity 1 24 0 207 322 78 26 chr21 27779462 27779577 -17127993 - MER5A DNA MER1_type -32 157 37 * 318 333 68 8 chr21 27779482 27779599 -17127971 + MER5A DNA MER1_type 63 186 -3 2406 93 0 3 chr21 27779777 27780088 -17127482 + AluSx SINE Alu 1 310 -2 389 271 65 0 chr21 27780413 27780520 -17127050 + MER5B DNA MER1_type 2 115 -63 229 316 51 31 chr21 27780801 27780899 -17126671 - MIR SINE MIR -53 209 110 253 229 0 0 chr21 27780916 27780964 -17126606 - L2 LINE L2 -13 3300 3253 290 308 87 0 chr21 27781288 27781392 -17126178 - MIR SINE MIR -113 149 37 630 136 29 0 chr21 27784060 27784163 -17123407 - MER45A DNA AcHobo 0 178 73 3889 153 14 21 chr21 27785583 27786414 -17121156 + MER49 LTR ERV1 1 911 -12 346 227 36 0 chr21 27786477 27786605 -17120965 + MLT1J1 LTR MaLR 1 134 -312 348 292 89 51 chr21 27786612 27786848 -17120722 + MLT1J2 LTR MaLR 177 421 -29 246 325 50 81 chr21 27787240 27787400 -17120170 - MIR3 SINE MIR -18 190 36 307 315 56 43 chr21 27787893 27788055 -17119515 - L3b LINE CR1 -56 1527 1364 26 30 0 0 chr21 27788296 27788329 -17119241 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr21 27788329 27788351 -17119219 + (CA)n Simple_repeat Simple_repeat 1 22 0 229 128 64 0 chr21 27788650 27788697 -17118873 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 578 251 14 84 chr21 27789713 27789988 -17117582 + MER102a DNA MER1_type 75 330 0 1261 61 11 11 chr21 27790232 27790412 -17117158 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2187 96 0 4 chr21 27790412 27790852 -17116718 - AluSc SINE Alu 0 439 1 2220 102 10 10 chr21 27792325 27792628 -17114942 + AluSq SINE Alu 1 303 -10 442 335 31 21 chr21 27793696 27793890 -17113680 - MIR3 SINE MIR -8 200 5 2564 11 0 0 chr21 27794092 27794398 -17113172 - AluYa5 SINE Alu 0 306 1 297 252 48 19 chr21 27794781 27794884 -17112686 - MER5C DNA MER1_type -215 109 4 2223 116 0 3 chr21 27795384 27795685 -17111885 - AluSq SINE Alu -13 300 1 257 318 26 26 chr21 27795782 27795936 -17111634 - MIR3 SINE MIR -49 159 6 540 294 0 35 chr21 27796608 27796778 -17110792 - MIR SINE MIR 0 262 99 24 32 0 0 chr21 27797740 27797771 -17109799 + AT_rich Low_complexity Low_complexity 1 31 0 189 171 0 0 chr21 27798842 27798877 -17108693 + (AATTG)n Simple_repeat Simple_repeat 1 35 0 609 278 110 5 chr21 27799231 27799440 -17108130 - MIR SINE MIR 0 262 32 2224 109 0 3 chr21 27800174 27800468 -17107102 + AluSg SINE Alu 3 295 -15 1985 109 16 36 chr21 27801023 27801327 -17106243 + AluSg1 SINE Alu 3 300 -9 306 229 29 0 chr21 27802358 27802428 -17105142 + CT-rich Low_complexity Low_complexity 3 74 0 379 298 8 24 chr21 27802461 27802585 -17104985 - L2 LINE L2 -1 3312 3191 * 530 199 56 107 chr21 27802572 27802716 -17104854 + MIR SINE MIR 26 159 -103 2406 78 0 7 chr21 27802716 27803022 -17104548 - AluSp SINE Alu -7 306 3 530 199 56 107 chr21 27803022 27803073 -17104497 + MIR SINE MIR 159 211 -51 644 106 0 0 chr21 27803409 27803494 -17104076 + AluS SINE Alu 1 85 -227 2338 82 3 13 chr21 27803519 27803824 -17103746 + AluSx SINE Alu 1 302 -10 1710 158 91 0 chr21 27803862 27804191 -17103379 + MER46B DNA MER2_type 3 236 0 2645 19 0 22 chr21 27804632 27804945 -17102625 - AluY SINE Alu -5 306 1 789 133 139 6 chr21 27805243 27805401 -17102169 + L1PB4 LINE L1 5968 6146 -10 2267 115 0 0 chr21 27805503 27805807 -17101763 + AluSg SINE Alu 1 304 -6 277 380 9 0 chr21 27806010 27806123 -17101447 + MIR3 SINE MIR 55 168 -40 25 31 0 0 chr21 27806775 27806807 -17100763 + AT_rich Low_complexity Low_complexity 1 32 0 216 97 0 0 chr21 27806816 27806847 -17100723 + (T)n Simple_repeat Simple_repeat 1 31 0 1011 152 0 0 chr21 27809917 27810134 -17097436 + (TA)n Simple_repeat Simple_repeat 1 217 0 297 215 76 13 chr21 27812411 27812490 -17095080 + MIR3 SINE MIR 88 171 -37 26 30 0 0 chr21 27813340 27813373 -17094197 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr21 27815766 27815789 -17091781 + AT_rich Low_complexity Low_complexity 1 23 0 1166 186 18 23 chr21 27815821 27816041 -17091529 - MER20 DNA MER1_type 0 219 1 2270 73 0 0 chr21 27817916 27818191 -17089379 - AluY SINE Alu -2 309 35 1509 137 117 23 chr21 27818250 27818593 -17088977 + THE1C LTR MaLR 1 375 0 1957 111 10 20 chr21 27819376 27819673 -17087897 - AluY SINE Alu -15 296 3 273 238 12 25 chr21 27820730 27820810 -17086760 - LTR33 LTR ERVL -343 178 100 601 219 0 25 chr21 27821494 27821613 -17085957 - L2 LINE L2 -17 3296 3181 1718 171 14 7 chr21 27821722 27822008 -17085562 + AluJb SINE Alu 5 292 -20 213 250 16 47 chr21 27822542 27822606 -17084964 + MIR SINE MIR 80 141 -121 258 156 0 0 chr21 27824131 27824176 -17083394 + (TG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr21 27825292 27825315 -17082255 + (T)n Simple_repeat Simple_repeat 1 23 0 250 153 34 0 chr21 27825658 27825717 -17081853 + GA-rich Low_complexity Low_complexity 2 62 0 192 179 0 0 chr21 27826866 27826905 -17080665 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 321 47 0 0 chr21 27826905 27826948 -17080622 + (CA)n Simple_repeat Simple_repeat 2 44 0 787 261 101 4 chr21 27829370 27829638 -17077932 - MLT1D LTR MaLR -5 500 207 428 137 0 41 chr21 27829669 27829742 -17077828 + AluSg/x SINE Alu 209 278 -32 225 0 0 0 chr21 27829742 27829767 -17077803 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2104 97 48 3 chr21 27829770 27830059 -17077511 + AluSc SINE Alu 1 302 -7 637 229 42 36 chr21 27830061 27830253 -17077317 - MLT1D LTR MaLR -309 196 4 2242 186 98 11 chr21 27830942 27831420 -17076150 + MLT2B1 LTR ERVL 1 520 0 268 294 54 33 chr21 27831989 27832081 -17075489 + MIR SINE MIR 31 124 -84 188 254 99 56 chr21 27832320 27832391 -17075179 - L2 LINE L2 0 3313 3240 4960 88 6 0 chr21 27835003 27835684 -17071886 - L1PA11 LINE L1 0 6174 5490 516 231 28 122 chr21 27835940 27836226 -17071344 + LTR37B LTR ERV1 6 264 -204 225 0 0 0 chr21 27836228 27836253 -17071317 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 739 161 36 0 chr21 27836253 27836390 -17071180 - L1PA10 LINE L1 -21 6147 6006 368 67 17 0 chr21 27836618 27836678 -17070892 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 234 0 0 0 chr21 27836746 27836772 -17070798 + (TCTTG)n Simple_repeat Simple_repeat 5 30 0 44 70 0 0 chr21 27839034 27839120 -17068450 + AT_rich Low_complexity Low_complexity 1 86 0 300 269 30 10 chr21 27839233 27839366 -17068204 + MER31-int LTR ERV1 4980 5072 -1259 2015 167 98 66 chr21 27839376 27839878 -17067692 + MLT2B1 LTR ERVL 1 518 -2 261 258 81 86 chr21 27839947 27840145 -17067425 + MER31-int LTR ERV1 3818 4014 -922 1672 203 36 88 chr21 27840189 27840722 -17066848 + MLT1D LTR MaLR 1 505 0 1251 220 29 75 chr21 27841014 27841495 -17066075 + LTR37B LTR ERV1 10 468 0 465 311 142 0 chr21 27842900 27843090 -17064480 + MIR SINE MIR 3 219 -43 2450 90 3 0 chr21 27844355 27844665 -17062905 - AluSp SINE Alu -2 311 1 251 342 18 18 chr21 27844892 27845006 -17062564 + L2 LINE L2 3157 3270 -2 189 280 20 0 chr21 27845011 27845061 -17062509 + L2 LINE L2 3004 3054 -218 23 33 0 0 chr21 27845105 27845135 -17062435 + AT_rich Low_complexity Low_complexity 1 30 0 2221 118 10 0 chr21 27845255 27845561 -17062009 - AluSx SINE Alu -3 309 1 313 341 9 89 chr21 27848008 27848222 -17059348 + L2 LINE L2 2981 3177 -95 4619 101 4 45 chr21 27848237 27848798 -17058772 + L1PB1 LINE L1 5418 6000 -151 2450 60 10 0 chr21 27848798 27849099 -17058471 + AluY SINE Alu 1 304 -7 2052 120 14 3 chr21 27849109 27849401 -17058169 + AluSc SINE Alu 1 295 -14 4619 101 4 45 chr21 27849401 27849592 -17057978 + L1PB1 LINE L1 6009 6150 -1 217 325 143 13 chr21 27849742 27849896 -17057674 + MIR SINE MIR 23 196 -66 342 61 0 0 chr21 27850723 27850772 -17056798 + (TA)n Simple_repeat Simple_repeat 2 50 0 374 280 0 34 chr21 27851520 27851638 -17055932 - MER81 DNA DNA 0 114 1 2392 102 0 0 chr21 27851894 27852199 -17055371 - AluSq SINE Alu -8 305 1 714 230 133 12 chr21 27852542 27852790 -17054780 + LTR16A1 LTR ERVL 174 451 -6 2563 105 19 11 chr21 27852991 27853352 -17054218 - THE1B LTR MaLR 0 364 1 191 184 26 0 chr21 27855280 27855318 -17052252 + MER5A DNA MER1_type 151 189 0 230 317 42 111 chr21 27855437 27855771 -17051799 + L2 LINE L2 2959 3269 -3 1364 184 16 29 chr21 27855857 27856001 -17051569 + MLT1B LTR MaLR 2 146 -244 1610 164 108 40 chr21 27856001 27856372 -17051198 - MSTD LTR MaLR 0 396 1 1364 184 16 29 chr21 27856372 27856536 -17051034 + MLT1B LTR MaLR 146 306 -84 268 353 79 76 chr21 27858932 27859147 -17048423 - L2 LINE L2 0 3272 3054 360 0 0 0 chr21 27859147 27859187 -17048383 + (TG)n Simple_repeat Simple_repeat 1 40 0 268 353 79 76 chr21 27859187 27859314 -17048256 - L2 LINE L2 -218 3054 2929 2449 69 3 0 chr21 27859437 27859741 -17047829 - AluY SINE Alu -6 305 1 906 177 140 24 chr21 27860212 27860711 -17046859 + MLT1E1 LTR MaLR 1 620 -34 1738 150 15 64 chr21 27860734 27861060 -17046510 - AluJb SINE Alu -2 310 1 231 108 0 0 chr21 27861060 27861097 -17046473 + MLT1E1 LTR MaLR 583 619 -5 1601 223 27 11 chr21 27861170 27861538 -17046032 + MLT1A2 LTR MaLR 1 374 0 1400 149 78 0 chr21 27861538 27861833 -17045737 + MER33 DNA MER1_type 5 322 -2 424 354 138 9 chr21 27862005 27862338 -17045232 + L2 LINE L2 2938 3313 0 237 83 0 0 chr21 27862453 27862489 -17045081 + (CA)n Simple_repeat Simple_repeat 2 37 0 205 330 11 0 chr21 27862524 27862615 -17044955 + (TA)n Simple_repeat Simple_repeat 2 93 0 198 250 192 50 chr21 27862742 27862862 -17044708 - L3 LINE CR1 -2 1575 1439 1115 211 83 75 chr21 27862882 27863174 -17044396 + MLT1A1 LTR MaLR 1 289 -76 2138 113 10 0 chr21 27863174 27863465 -17044105 + AluSc SINE Alu 1 294 -15 216 0 0 0 chr21 27863468 27863492 -17044078 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1115 211 83 75 chr21 27863492 27863555 -17044015 + MLT1A1 LTR MaLR 290 363 -2 311 295 214 46 chr21 27864474 27864759 -17042811 - L2 LINE L2 -5 3267 2935 307 291 126 8 chr21 27864900 27865027 -17042543 - L2 LINE L2 -619 2695 2554 185 318 15 0 chr21 27866515 27866581 -17040989 - L2 LINE L2 -999 2315 2249 1574 194 77 9 chr21 27867403 27867743 -17039827 + MLT1A1 LTR MaLR 1 363 -2 195 232 0 0 chr21 27867957 27868013 -17039557 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1571 106 49 76 chr21 27868119 27868448 -17039122 - THE1C LTR MaLR -55 320 1 420 305 91 5 chr21 27868766 27868972 -17038598 - MIR SINE MIR -1 261 33 210 91 0 0 chr21 27869173 27869206 -17038364 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 200 306 20 0 chr21 27869219 27869268 -17038302 - L2 LINE L2 -18 3295 3246 189 0 0 0 chr21 27870881 27870902 -17036668 + (TTG)n Simple_repeat Simple_repeat 1 21 0 540 236 65 75 chr21 27870993 27871129 -17036441 - MIR SINE MIR -24 238 103 2463 102 34 8 chr21 27871129 27871482 -17036088 + THE1B LTR MaLR 1 362 -2 540 236 65 75 chr21 27871482 27871544 -17036026 - MIR SINE MIR -159 103 42 402 285 98 0 chr21 27871547 27871670 -17035900 + MER96 DNA MER1_type? 5 139 -36 302 123 18 0 chr21 27873854 27873911 -17033659 + (CA)n Simple_repeat Simple_repeat 1 58 0 358 314 51 22 chr21 27874569 27874706 -17032864 - MIR SINE MIR -119 143 3 442 303 240 0 chr21 27874773 27874981 -17032589 - MIR SINE MIR -3 259 2 546 314 98 33 chr21 27875032 27875277 -17032293 - MIR SINE MIR 0 262 2 2662 215 30 41 chr21 27875897 27876507 -17031063 + MER77 LTR ERV1 3 605 0 2344 102 7 0 chr21 27876792 27877097 -17030473 - AluSq SINE Alu -6 307 1 416 315 80 7 chr21 27877161 27877367 -17030203 - MIR SINE MIR -44 218 3 21 57 0 0 chr21 27877881 27877916 -17029654 + AT_rich Low_complexity Low_complexity 1 35 0 651 276 55 61 chr21 27878480 27878773 -17028797 - L2 LINE L2 0 3313 3023 1504 227 28 0 chr21 27881345 27881671 -17025899 + Tigger7 DNA MER2_type 10 344 -2143 723 204 7 0 chr21 27881666 27881813 -17025757 + Tigger7 DNA MER2_type 2343 2490 -1 * 310 229 0 0 chr21 27882097 27882158 -17025412 - MIR3 SINE MIR -47 161 101 353 40 40 0 chr21 27884555 27884605 -17022965 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 2280 95 3 0 chr21 27885080 27885375 -17022195 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr21 27885987 27886009 -17021561 + AT_rich Low_complexity Low_complexity 1 22 0 2412 53 26 0 chr21 27886035 27886338 -17021232 + AluY SINE Alu 1 311 0 196 351 0 27 chr21 27886451 27886525 -17021045 + MER5A DNA MER1_type 69 140 -49 21 36 0 0 chr21 27887316 27887344 -17020226 + AT_rich Low_complexity Low_complexity 1 28 0 2051 140 10 3 chr21 27888207 27888515 -17019055 - AluSx SINE Alu -2 310 1 339 255 81 20 chr21 27888673 27888822 -17018748 + MLT1I LTR MaLR 1 158 -251 2260 81 0 3 chr21 27889632 27889961 -17017609 + AluSp SINE Alu 1 328 0 1270 213 163 23 chr21 27891217 27891654 -17015916 + MLT1D LTR MaLR 8 505 0 681 287 4 9 chr21 27892741 27892914 -17014656 - MER5B DNA MER1_type 0 189 1 243 333 119 47 chr21 27893660 27894090 -17013480 - L2 LINE L2 -492 2822 2362 340 102 0 0 chr21 27896010 27896069 -17011501 + L1PA13 LINE L1 6103 6161 -2 2344 102 3 0 chr21 27896075 27896380 -17011190 + AluSp SINE Alu 1 306 -7 220 237 32 140 chr21 27896490 27896583 -17010987 + L2 LINE L2 3211 3293 -20 543 236 194 18 chr21 27896848 27897013 -17010557 + MIR SINE MIR 53 246 -16 447 318 38 0 chr21 27898063 27898195 -17009375 - L2 LINE L2 0 3272 3136 353 345 61 9 chr21 27899491 27899720 -17007850 + MIR SINE MIR 8 248 -14 1893 111 0 8 chr21 27901065 27901340 -17006230 - AluSx SINE Alu 0 311 39 22 35 0 0 chr21 27901347 27901376 -17006194 + AT_rich Low_complexity Low_complexity 1 29 0 455 246 112 0 chr21 27901843 27901977 -17005593 - MER20 DNA MER1_type -68 151 3 1991 103 4 4 chr21 27902010 27902273 -17005297 - AluSp SINE Alu -12 301 39 234 0 0 0 chr21 27904241 27904267 -17003303 + (TG)n Simple_repeat Simple_repeat 1 26 0 1862 143 51 38 chr21 27904425 27904795 -17002775 + THE1C LTR MaLR 1 375 0 342 289 33 0 chr21 27905013 27905103 -17002467 - MIR SINE MIR -75 187 95 280 278 155 0 chr21 27905544 27905641 -17001929 - L2 LINE L2 -15 3257 3146 444 232 40 79 chr21 27905644 27905821 -17001749 - MIR SINE MIR -73 189 20 1096 209 64 82 chr21 27906675 27907234 -17000336 + L1MC4 LINE L1 7494 8042 0 220 288 38 0 chr21 27907670 27907750 -16999820 - MIR SINE MIR -76 186 104 373 221 248 14 chr21 27907776 27907921 -16999649 - L3 LINE CR1 -7 1570 1392 327 174 152 0 chr21 27908999 27909091 -16998479 + MIR SINE MIR 157 262 0 902 264 100 41 chr21 27909361 27909702 -16997868 + L2 LINE L2 2160 2520 -794 339 311 108 24 chr21 27910283 27910450 -16997120 + L2 LINE L2 2490 2670 -644 1056 200 5 0 chr21 27910482 27910672 -16996898 + Tigger7 DNA MER2_type 2 192 -2295 745 75 0 268 chr21 27910676 27910806 -16996764 + Tigger7 DNA MER2_type 2321 2366 -121 2262 109 0 0 chr21 27910806 27911108 -16996462 + AluSg SINE Alu 1 302 -8 745 75 0 268 chr21 27911108 27911205 -16996365 + Tigger7 DNA MER2_type 2366 2487 0 1067 260 72 49 chr21 27911216 27911799 -16995771 + L2 LINE L2 2712 3307 -6 499 314 78 46 chr21 27911905 27912278 -16995292 - L3 LINE CR1 -18 1559 1175 5729 98 33 10 chr21 27912491 27913732 -16993838 + L1PA16 LINE L1 4897 6157 -9 774 279 71 45 chr21 27913836 27914173 -16993397 + L2 LINE L2 2928 3273 -40 604 114 46 17 chr21 27914206 27914381 -16993189 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 521 42 0 168 chr21 27914404 27914467 -16993103 + MADE1 DNA Mariner 1 44 -36 2346 68 0 14 chr21 27914467 27914763 -16992807 - AluY SINE Alu -19 292 1 521 42 0 168 chr21 27914763 27914794 -16992776 + MADE1 DNA Mariner 44 79 -1 417 170 38 25 chr21 27914853 27915012 -16992558 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 21 36 0 0 chr21 27915121 27915149 -16992421 + AT_rich Low_complexity Low_complexity 1 28 0 2042 165 98 18 chr21 27915639 27916240 -16991330 + MER39 LTR ERV1 1 688 -19 712 244 58 5 chr21 27916502 27916707 -16990863 + MER58A DNA MER1_type 9 224 0 209 321 0 0 chr21 27919948 27920004 -16987566 + GA-rich Low_complexity Low_complexity 6 61 0 298 284 0 0 chr21 27920496 27920570 -16987000 - MIR3 SINE MIR -9 199 126 718 296 21 56 chr21 27920818 27920993 -16986577 - L1ME4a LINE L1 -197 5924 5744 2000 139 0 0 chr21 27920993 27921281 -16986289 + AluSx SINE Alu 13 300 -12 718 296 21 56 chr21 27921281 27921531 -16986039 - L1ME4a LINE L1 -377 5744 5514 2114 111 7 7 chr21 27922527 27922825 -16984745 - AluY SINE Alu -13 298 1 2428 88 3 0 chr21 27924070 27924376 -16983194 - AluSx SINE Alu -5 307 1 258 176 0 0 chr21 27924906 27924957 -16982613 + T-rich Low_complexity Low_complexity 1 51 0 393 39 0 0 chr21 27925389 27925440 -16982130 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2184 116 0 0 chr21 27925441 27925725 -16981845 - AluSg SINE Alu -26 284 1 932 127 27 9 chr21 27927825 27928047 -16979523 + CT-rich Low_complexity Low_complexity 1 226 0 1711 174 8 47 chr21 27929158 27929538 -16978032 + MLT1B LTR MaLR 1 365 -25 2310 98 0 0 chr21 27929605 27929901 -16977669 - AluSx SINE Alu -16 296 1 2179 235 124 68 chr21 27931122 27931963 -16975607 - L2 LINE L2 -43 3229 2309 2054 98 3 20 chr21 27931963 27932269 -16975301 + L1PA13 LINE L1 5860 6160 -3 2179 235 124 68 chr21 27932269 27932425 -16975145 - L2 LINE L2 -963 2309 2163 1860 130 4 0 chr21 27932430 27932691 -16974879 + AluSx SINE Alu 49 310 -2 824 240 65 18 chr21 27932692 27932921 -16974649 + MLT1C LTR MaLR 228 467 0 258 292 58 42 chr21 27934080 27934200 -16973370 - L2 LINE L2 -5 3267 3146 527 236 64 13 chr21 27935252 27935409 -16972161 - MER103 DNA DNA 0 166 2 2235 119 0 0 chr21 27935816 27936126 -16971444 - AluSx SINE Alu -2 310 1 2335 69 0 0 chr21 27936824 27937114 -16970456 - AluY SINE Alu -19 292 3 24 32 0 0 chr21 27937162 27937193 -16970377 + AT_rich Low_complexity Low_complexity 1 31 0 500 254 129 58 chr21 27937227 27937377 -16970193 - L1ME4a LINE L1 -65 6056 5918 444 37 0 0 chr21 27937377 27937431 -16970139 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1898 125 50 3 chr21 27937437 27937734 -16969836 - AluSq SINE Alu -2 311 1 500 254 129 58 chr21 27937734 27938080 -16969490 - L1ME4a LINE L1 -207 5914 5517 500 242 183 40 chr21 27938456 27938708 -16968862 + MLT1I LTR MaLR 30 317 -92 31 0 0 0 chr21 27938742 27938773 -16968797 + AT_rich Low_complexity Low_complexity 1 31 0 1922 100 0 0 chr21 27939225 27939475 -16968095 - AluSx SINE Alu -4 308 59 378 280 237 25 chr21 27939494 27940008 -16967562 - L1ME4a LINE L1 -1535 4611 3989 24 0 0 0 chr21 27940025 27940049 -16967521 + AT_rich Low_complexity Low_complexity 1 24 0 314 316 51 13 chr21 27940141 27940378 -16967192 - L1ME4a LINE L1 -2310 3836 3591 28 99 0 0 chr21 27940544 27940635 -16966935 + AT_rich Low_complexity Low_complexity 1 91 0 663 159 13 19 chr21 27940705 27940862 -16966708 + CT-rich Low_complexity Low_complexity 1 156 0 1335 178 170 7 chr21 27941121 27941397 -16966173 + MER7A DNA MER2_type 1 319 -27 326 269 109 6 chr21 27941651 27941807 -16965763 - L1ME4a LINE L1 -3148 2998 2827 1041 264 58 58 chr21 27941876 27942028 -16965542 - L1ME4a LINE L1 -57 6064 5913 399 41 0 0 chr21 27942028 27942077 -16965493 + (CA)n Simple_repeat Simple_repeat 2 50 0 1041 264 58 58 chr21 27942077 27942489 -16965081 - L1ME4a LINE L1 -207 5914 5500 275 323 194 0 chr21 27943848 27943972 -16963598 + L2 LINE L2 3125 3272 0 217 242 16 32 chr21 27944748 27944810 -16962760 + MIR SINE MIR 97 157 -105 819 196 35 0 chr21 27945330 27945503 -16962067 + MER96B DNA MER1_type? 1 179 -238 623 299 0 56 chr21 27945765 27945847 -16961723 - MIR SINE MIR -34 228 143 2758 94 5 0 chr21 27945847 27946220 -16961350 + THE1C LTR MaLR 1 375 0 9158 136 43 41 chr21 27946220 27947796 -16959774 + THE1C-int LTR MaLR 1 1580 0 2573 116 11 0 chr21 27947796 27948167 -16959403 + THE1C LTR MaLR 1 375 0 623 299 0 56 chr21 27948167 27948313 -16959257 - MIR SINE MIR -116 146 11 222 37 0 0 chr21 27949027 27949054 -16958516 + (TA)n Simple_repeat Simple_repeat 2 28 0 280 51 26 0 chr21 27949054 27949093 -16958477 - MADE1 DNA Mariner -3 77 38 326 121 0 17 chr21 27950436 27950494 -16957076 + (TG)n Simple_repeat Simple_repeat 2 58 0 704 196 84 69 chr21 27950842 27951244 -16956326 + LTR48 LTR ERV1 213 780 -7 2122 80 0 28 chr21 27952259 27952546 -16955024 + AluY SINE Alu 33 311 0 711 112 43 26 chr21 27952994 27953110 -16954460 + FLAM_C SINE Alu 8 125 -18 186 43 0 0 chr21 27954963 27954986 -16952584 + (A)n Simple_repeat Simple_repeat 1 23 0 473 274 94 20 chr21 27956524 27956725 -16950845 - L1ME4a LINE L1 -181 5940 5725 30 0 0 0 chr21 27956858 27956888 -16950682 + AT_rich Low_complexity Low_complexity 1 30 0 1576 178 34 20 chr21 27956888 27957181 -16950389 - AluJb SINE Alu -15 297 1 1473 220 145 20 chr21 27957676 27958130 -16949440 - MLT2B2 LTR ERVL 0 515 5 652 273 33 58 chr21 27958596 27958871 -16948699 - L2 LINE L2 0 3313 3046 385 188 182 65 chr21 27959427 27959581 -16947989 - L2 LINE L2 -2 3311 3140 25 31 0 0 chr21 27960191 27960223 -16947347 + AT_rich Low_complexity Low_complexity 1 32 0 8745 115 8 4 chr21 27960778 27962069 -16945501 - HSMAR2 DNA Mariner -1 1301 6 1531 207 100 85 chr21 27963187 27964078 -16943492 + MER63C DNA MER1_type 10 930 0 643 337 100 27 chr21 27964131 27964301 -16943269 + L2 LINE L2 2550 2706 -607 1617 169 37 0 chr21 27964301 27964654 -16942916 - AluJb SINE Alu 0 363 1 643 337 100 27 chr21 27964654 27965191 -16942379 + L2 LINE L2 2706 3313 0 315 320 53 0 chr21 27965305 27965380 -16942190 + MER91A DNA MER1_type 117 195 -1 558 95 0 2 chr21 27965570 27965822 -16941748 + AluSx SINE Alu 1 301 -10 199 333 26 13 chr21 27966059 27966137 -16941433 + MIR SINE MIR 111 189 -73 1577 179 7 37 chr21 27966153 27966484 -16941086 - AluJo SINE Alu 0 322 1 2290 119 0 3 chr21 27966622 27966934 -16940636 - AluSx SINE Alu -1 311 1 945 260 127 15 chr21 27968936 27969267 -16938303 - L2 LINE L2 0 3313 2946 928 231 195 54 chr21 27969569 27970167 -16937403 - Charlie2 DNA MER1_type 0 2862 2105 2318 105 0 0 chr21 27970167 27970471 -16937099 - AluSc SINE Alu -5 304 1 928 231 195 54 chr21 27970471 27970729 -16936841 - Charlie2 DNA MER1_type -757 2105 1885 532 297 80 8 chr21 27970755 27971004 -16936566 - Charlie2 DNA MER1_type -2578 284 18 359 292 120 30 chr21 27972675 27972942 -16934628 - L1M4 LINE L1 -1099 5047 4757 502 235 93 22 chr21 27973057 27973240 -16934330 + L1MC4 LINE L1 7846 8041 -1 28 38 0 19 chr21 27973353 27973369 -16934201 + AT_rich Low_complexity Low_complexity 1 16 -36 2128 121 3 0 chr21 27973369 27973659 -16933911 + AluSx SINE Alu 1 291 -21 28 38 0 19 chr21 27973659 27973695 -16933875 + AT_rich Low_complexity Low_complexity 16 52 0 1359 112 0 0 chr21 27973854 27974050 -16933520 + L1PA13 LINE L1 5964 6159 -4 422 264 135 7 chr21 27974734 27974882 -16932688 - MIR SINE MIR 0 262 96 1646 242 107 45 chr21 27974883 27975412 -16932158 + MLT1E LTR MaLR 1 522 -33 2499 63 0 3 chr21 27975779 27976081 -16931489 + AluY SINE Alu 3 303 -8 2270 101 0 0 chr21 27977505 27977803 -16929767 + AluSc SINE Alu 1 298 -11 221 268 152 65 chr21 27979280 27979418 -16928152 + MIR3 SINE MIR 7 156 -52 290 320 56 32 chr21 27979679 27979804 -16927766 + MIR SINE MIR 14 141 -121 34 24 0 0 chr21 27979908 27979949 -16927621 + AT_rich Low_complexity Low_complexity 1 41 0 203 184 20 0 chr21 27979953 27980002 -16927568 + (TAG)n Simple_repeat Simple_repeat 2 51 0 424 83 0 28 chr21 27980153 27980225 -16927345 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 213 195 0 0 chr21 27980226 27980267 -16927303 + CT-rich Low_complexity Low_complexity 4 44 0 2231 81 23 10 chr21 27980794 27981190 -16926380 - LTR7 LTR ERV1 -2 448 1 1719 156 7 45 chr21 27982504 27982812 -16924758 + AluJo SINE Alu 1 296 -16 26 50 0 0 chr21 27983136 27983176 -16924394 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr21 27983819 27983841 -16923729 + AT_rich Low_complexity Low_complexity 1 22 0 248 356 107 7 chr21 27984373 27984522 -16923048 + MIR SINE MIR 26 189 -73 1395 206 3 41 chr21 27984550 27984895 -16922675 + MLT2C1 LTR ERVL 1 332 -65 241 100 17 33 chr21 27984899 27984959 -16922611 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 514 259 18 59 chr21 27985323 27985493 -16922077 - MIR SINE MIR -7 255 93 2358 68 0 0 chr21 27986060 27986354 -16921216 + AluY SINE Alu 1 294 -17 192 111 0 0 chr21 27986641 27986677 -16920893 + (A)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr21 27986712 27986735 -16920835 + AT_rich Low_complexity Low_complexity 1 23 0 2294 95 0 16 chr21 27986792 27987107 -16920463 + AluSq SINE Alu 1 310 -3 784 235 55 0 chr21 27987663 27987863 -16919707 - MER20 DNA MER1_type 0 219 9 515 226 23 15 chr21 27988055 27988188 -16919382 - MLT1J2 LTR MaLR -316 134 1 2650 100 14 0 chr21 27988191 27988550 -16919020 - THE1B LTR MaLR 0 364 1 2414 87 3 3 chr21 27989067 27989378 -16918192 - AluY SINE Alu 0 311 1 223 260 0 68 chr21 27989409 27989482 -16918088 + MIR SINE MIR 168 235 -27 2167 108 20 3 chr21 27991643 27992008 -16915562 - AluSq SINE Alu 0 371 2 1827 138 77 41 chr21 27993019 27993381 -16914189 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 27994776 27994797 -16912773 + AT_rich Low_complexity Low_complexity 1 21 0 2463 60 7 0 chr21 27995815 27996114 -16911456 - AluY SINE Alu -10 301 1 915 185 76 38 chr21 27996218 27996429 -16911141 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chr21 27997499 27997535 -16910035 + AT_rich Low_complexity Low_complexity 1 36 0 403 136 0 39 chr21 27997770 27997873 -16909697 + (TG)n Simple_repeat Simple_repeat 2 100 0 301 322 67 45 chr21 27998283 27998550 -16909020 - LTR16C LTR ERVL -15 476 204 273 314 0 25 chr21 27998868 27998989 -16908581 + MIR SINE MIR 145 262 0 211 294 165 18 chr21 27998992 27999101 -16908469 + L2 LINE L2 3162 3286 -27 782 185 21 32 chr21 27999146 27999335 -16908235 + MLT1C LTR MaLR 55 241 -149 2076 118 9 40 chr21 27999337 27999685 -16907885 - MER1B DNA MER1_type -2 337 1 1071 181 66 26 chr21 27999685 27999894 -16907676 + MLT1C LTR MaLR 250 467 0 2232 115 0 0 chr21 28004412 28004707 -16902863 - AluSg SINE Alu -7 303 9 912 190 11 6 chr21 28004760 28004934 -16902636 + MER45A DNA AcHobo 4 178 0 1744 85 159 0 chr21 28005003 28005261 -16902309 + AluSg SINE Alu 2 300 0 2039 137 21 49 chr21 28005839 28006225 -16901345 - THE1C LTR MaLR 0 375 1 192 317 100 33 chr21 28006800 28006920 -16900650 - L2 LINE L2 -9 3304 3177 403 205 0 116 chr21 28006996 28007108 -16900462 + MER5B DNA MER1_type 8 106 -72 706 266 21 21 chr21 28007185 28007373 -16900197 - MER5A DNA MER1_type -1 188 1 263 333 108 39 chr21 28007388 28007728 -16899842 - L2 LINE L2 -224 3048 2679 183 314 49 39 chr21 28007795 28007897 -16899673 - L2 LINE L2 -792 2522 2420 373 354 54 0 chr21 28007944 28008091 -16899479 + MIR SINE MIR 80 234 -28 333 125 0 0 chr21 28009293 28009349 -16898221 + (TG)n Simple_repeat Simple_repeat 2 57 0 225 0 0 0 chr21 28009460 28009485 -16898085 + (TG)n Simple_repeat Simple_repeat 1 25 0 420 206 33 0 chr21 28009966 28010058 -16897512 + MIR SINE MIR 74 168 -94 303 256 45 112 chr21 28010946 28011169 -16896401 - HAL1b LINE L1 -10 1338 1131 211 214 0 31 chr21 28011213 28011311 -16896259 + CT-rich Low_complexity Low_complexity 1 95 0 2895 9 0 0 chr21 28011619 28011936 -16895634 - AluYb8 SINE Alu -1 317 1 2377 50 0 0 chr21 28012053 28012332 -16895238 - AluY SINE Alu -12 299 21 277 243 29 0 chr21 28012346 28012416 -16895154 - L1ME LINE L1 -494 5668 5597 274 338 103 20 chr21 28012774 28013232 -16894338 - L1ME LINE L1 -346 5775 5280 232 258 172 32 chr21 28013234 28013327 -16894243 + L2 LINE L2 3203 3308 -5 1123 67 0 13 chr21 28013893 28014043 -16893527 - AluY SINE Alu -8 303 156 753 257 45 42 chr21 28014158 28014446 -16893124 - L1MC/D LINE L1 -2037 5771 5483 2086 116 13 7 chr21 28015248 28015551 -16892019 + AluSx SINE Alu 1 305 -7 715 255 28 105 chr21 28015664 28015971 -16891599 - MLT1C LTR MaLR -5 462 206 2068 96 7 3 chr21 28015971 28016253 -16891317 - AluSc SINE Alu -26 283 1 715 255 28 105 chr21 28016253 28016439 -16891131 - MLT1C LTR MaLR -261 206 7 361 194 19 46 chr21 28016444 28016552 -16891018 - L1ME3 LINE L1 -182 5980 5876 748 288 90 81 chr21 28017983 28018469 -16889101 - L2 LINE L2 0 3313 2833 3321 135 37 8 chr21 28018469 28018981 -16888589 - MER1A DNA MER1_type 0 527 1 748 288 90 81 chr21 28018981 28019038 -16888532 - L2 LINE L2 -480 2833 2778 2527 211 17 40 chr21 28019038 28019686 -16887884 + MER92B LTR ERV1 1 633 -3 748 288 90 81 chr21 28019686 28019814 -16887756 - L2 LINE L2 -535 2778 2631 276 30 0 0 chr21 28020002 28020035 -16887535 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2013 114 4 0 chr21 28020040 28020313 -16887257 - AluSc SINE Alu -35 274 1 1794 184 16 0 chr21 28020414 28020719 -16886851 - AluJo SINE Alu -2 310 1 467 267 231 33 chr21 28020734 28021208 -16886362 - L2 LINE L2 0 3313 2748 347 186 25 17 chr21 28022062 28022180 -16885390 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 192 283 0 0 chr21 28022501 28022547 -16885023 + L2 LINE L2 3267 3312 -1 226 264 19 0 chr21 28023411 28023517 -16884053 + CT-rich Low_complexity Low_complexity 6 113 0 231 238 277 10 chr21 28024852 28024953 -16882617 + MER94 DNA DNA 6 133 -1 2438 97 0 0 chr21 28025000 28025311 -16882259 - AluSx SINE Alu -1 311 1 186 349 12 0 chr21 28026223 28026306 -16881264 + L2 LINE L2 3188 3271 -1 23 86 0 0 chr21 28026415 28026473 -16881097 + AT_rich Low_complexity Low_complexity 1 58 0 2110 130 0 25 chr21 28026646 28026962 -16880608 + AluSx SINE Alu 5 312 0 329 304 52 22 chr21 28029322 28029457 -16878113 - MIR SINE MIR -96 166 28 2003 138 0 14 chr21 28029472 28029809 -16877761 - AluSx SINE Alu 0 333 1 22 0 0 0 chr21 28029936 28029958 -16877612 + AT_rich Low_complexity Low_complexity 1 22 0 341 333 23 31 chr21 28031002 28031131 -16876439 - MIR3 SINE MIR -44 164 37 627 62 0 0 chr21 28031210 28031290 -16876280 + MADE1 DNA Mariner 1 80 0 234 136 0 0 chr21 28032357 28032401 -16875169 + (TC)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr21 28033196 28033221 -16874349 + AT_rich Low_complexity Low_complexity 1 25 0 449 270 102 0 chr21 28034799 28034936 -16872634 - MIR SINE MIR -2 260 110 315 327 58 19 chr21 28035243 28035451 -16872119 + MLT1K LTR MaLR 326 541 -47 295 239 167 36 chr21 28035670 28035808 -16871762 - MER117 DNA MER1_type -29 168 13 224 358 0 30 chr21 28036684 28036751 -16870819 - L2 LINE L2 -50 3263 3199 25 31 0 0 chr21 28037584 28037616 -16869954 + AT_rich Low_complexity Low_complexity 1 32 0 1755 140 20 20 chr21 28039193 28039493 -16868077 - Tigger1 DNA MER2_type 0 2418 2119 * 4654 127 35 10 chr21 28039474 28039991 -16867579 - Tigger1 DNA MER2_type -1667 751 208 2135 125 3 0 chr21 28039991 28040288 -16867282 + AluSx SINE Alu 1 298 -14 4654 127 35 10 chr21 28040288 28040502 -16867068 - Tigger1 DNA MER2_type -2210 208 1 668 300 80 61 chr21 28041624 28042251 -16865319 + L2 LINE L2 2685 3313 0 283 266 35 8 chr21 28043779 28043882 -16863688 - MIR SINE MIR -57 151 47 2145 109 0 50 chr21 28043887 28044071 -16863499 - AluSq SINE Alu -9 304 141 189 0 0 0 chr21 28044071 28044092 -16863478 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2145 109 0 50 chr21 28044092 28044227 -16863343 - AluSq SINE Alu -172 141 1 598 302 102 38 chr21 28044822 28045057 -16862513 + MIR SINE MIR 9 258 -4 538 314 35 22 chr21 28045190 28045422 -16862148 + MIR SINE MIR 23 259 -3 6205 139 27 8 chr21 28045752 28047059 -16860511 + L1MA4A LINE L1 4967 6299 -4 658 230 66 17 chr21 28047055 28047282 -16860288 + L1MC4 LINE L1 6781 7062 -788 * 323 333 0 0 chr21 28047672 28047774 -16859796 + MLT1I LTR MaLR 282 383 -26 400 313 82 15 chr21 28047876 28048071 -16859499 - MIR SINE MIR -53 209 2 234 62 0 0 chr21 28049440 28049472 -16858098 + (TG)n Simple_repeat Simple_repeat 1 32 0 755 263 32 0 chr21 28050166 28050356 -16857214 + L2 LINE L2 1777 1972 -1342 594 286 89 10 chr21 28050696 28050899 -16856671 - MIR SINE MIR 0 262 44 999 164 65 60 chr21 28051003 28051235 -16856335 - Tigger2 DNA MER2_type -25 2693 2461 4128 143 44 10 chr21 28051298 28052007 -16855563 - Tigger2 DNA MER2_type -1985 733 1 943 253 14 5 chr21 28052090 28052311 -16855259 - MER58A DNA MER1_type -1 223 1 682 319 94 33 chr21 28052390 28052870 -16854700 + MLT1J LTR MaLR 3 511 0 274 290 154 40 chr21 28052938 28053121 -16854449 + MIR SINE MIR 8 206 -55 306 223 21 11 chr21 28053156 28053250 -16854320 + (TA)n Simple_repeat Simple_repeat 1 95 0 519 264 143 5 chr21 28053896 28054112 -16853458 - L2 LINE L2 -543 2771 2526 22 70 0 0 chr21 28054120 28054163 -16853407 + AT_rich Low_complexity Low_complexity 1 43 0 724 313 134 16 chr21 28054267 28054966 -16852604 - L2 LINE L2 0 3313 2523 1536 217 20 9 chr21 28056274 28056615 -16850955 + MLT2D LTR ERVL 1 345 -69 200 240 0 13 chr21 28056644 28056719 -16850851 + (TA)n Simple_repeat Simple_repeat 2 75 0 23 0 0 0 chr21 28057082 28057105 -16850465 + AT_rich Low_complexity Low_complexity 1 23 0 639 278 67 54 chr21 28057711 28057953 -16849617 - MLT1H LTR MaLR -4 545 308 336 24 0 0 chr21 28057953 28057994 -16849576 + (TC)n Simple_repeat Simple_repeat 2 42 0 228 35 0 0 chr21 28057993 28058022 -16849548 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 639 278 67 54 chr21 28057994 28058276 -16849294 - MLT1H LTR MaLR -241 308 1 1456 232 10 0 chr21 28058475 28058777 -16848793 - AluJo SINE Alu -7 305 1 390 243 143 14 chr21 28058787 28058927 -16848643 - MIR SINE MIR -74 188 31 238 286 105 38 chr21 28059396 28059501 -16848069 + L2 LINE L2 3158 3269 -3 224 143 18 0 chr21 28060174 28060230 -16847340 + (TG)n Simple_repeat Simple_repeat 2 58 0 477 47 0 0 chr21 28060286 28060350 -16847220 + (CA)n Simple_repeat Simple_repeat 1 64 0 371 296 26 26 chr21 28060454 28060569 -16847001 - L2 LINE L2 -5 3267 3153 273 400 79 0 chr21 28061178 28061368 -16846202 + L2 LINE L2 2767 2971 -343 1911 129 153 5 chr21 28061378 28061751 -16845819 - MSTA LTR MaLR 0 428 1 8897 185 27 2 chr21 28061751 28063363 -16844207 - MSTA-int LTR MaLR 0 1651 1 1738 163 182 3 chr21 28063363 28063726 -16843844 - MSTA LTR MaLR 0 428 1 244 111 37 0 chr21 28064291 28064345 -16843225 + (TA)n Simple_repeat Simple_repeat 1 56 0 476 270 124 18 chr21 28064532 28064758 -16842812 + MIR SINE MIR 13 262 0 62 63 0 0 chr21 28064763 28064874 -16842696 + AT_rich Low_complexity Low_complexity 1 111 0 242 344 115 0 chr21 28067174 28067296 -16840274 + L2 LINE L2 3137 3272 0 332 388 105 25 chr21 28068573 28069019 -16838551 + L3 LINE CR1 99 590 -987 2084 131 0 0 chr21 28069019 28069328 -16838242 - AluSx SINE Alu 0 309 1 332 388 105 25 chr21 28069328 28069367 -16838203 + L3 LINE CR1 590 624 -953 640 359 146 16 chr21 28069397 28070019 -16837551 + L3 LINE CR1 720 1422 -155 695 256 87 48 chr21 28074421 28074800 -16832770 - HAL1b LINE L1 -236 1112 719 2123 87 7 0 chr21 28076089 28076366 -16831204 + AluSp SINE Alu 3 281 -32 896 83 0 8 chr21 28076368 28076500 -16831070 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 251 157 20 0 chr21 28076854 28076905 -16830665 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 208 337 0 20 chr21 28077144 28077245 -16830325 + CT-rich Low_complexity Low_complexity 3 101 0 1917 128 24 3 chr21 28077293 28077591 -16829979 + AluSg SINE Alu 1 304 -6 321 26 0 0 chr21 28077872 28077910 -16829660 + (TC)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr21 28078028 28078049 -16829521 + (TTA)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chr21 28078737 28078764 -16828806 + (TA)n Simple_repeat Simple_repeat 2 28 0 360 261 67 52 chr21 28078949 28079083 -16828487 + L2 LINE L2 3137 3272 0 253 281 37 12 chr21 28079201 28079283 -16828287 + L2 LINE L2 3184 3267 -5 2176 126 0 0 chr21 28081039 28081341 -16826229 - AluSx SINE Alu -10 302 1 201 305 0 17 chr21 28081545 28081604 -16825966 + MIR SINE MIR 33 90 -172 525 190 30 0 chr21 28083251 28083351 -16824219 - MER20 DNA MER1_type 0 219 117 236 227 23 0 chr21 28083467 28083511 -16824059 - MER20 DNA MER1_type -173 46 2 730 250 14 64 chr21 28083725 28084005 -16823565 - L2 LINE L2 -58 3255 2990 1997 190 68 15 chr21 28084009 28084409 -16823161 - MSTB LTR MaLR -5 421 1 270 310 86 43 chr21 28084409 28084616 -16822954 - L2 LINE L2 -314 2999 2785 389 316 134 33 chr21 28085123 28085458 -16822112 - L2 LINE L2 -12 3301 2933 982 322 99 47 chr21 28085515 28086381 -16821189 - L2 LINE L2 -477 2837 1927 776 325 81 27 chr21 28086539 28087274 -16820296 - L2 LINE L2 -3 3310 2537 228 286 24 24 chr21 28087247 28087331 -16820239 - MIR SINE MIR -177 85 2 * 1897 151 7 3 chr21 28087888 28088186 -16819384 - AluSx SINE Alu -13 299 1 3159 25 0 0 chr21 28088989 28089355 -16818215 + L1PA5 LINE L1 5782 6147 -7 212 79 53 0 chr21 28089365 28089403 -16818167 + A-rich Low_complexity Low_complexity 5 44 0 511 341 31 4 chr21 28089763 28089992 -16817578 + MIR SINE MIR 28 262 0 34 0 0 0 chr21 28090695 28090729 -16816841 + AT_rich Low_complexity Low_complexity 1 34 0 991 158 90 38 chr21 28090759 28091049 -16816521 + MER33 DNA MER1_type 1 299 -25 1692 242 40 40 chr21 28091049 28091297 -16816273 - L1M4 LINE L1 -1886 4260 4013 1714 165 10 26 chr21 28091297 28091600 -16815970 - AluJo SINE Alu -14 298 1 1692 242 40 40 chr21 28091600 28091976 -16815594 - L1M4 LINE L1 -2132 4014 3636 1507 202 28 3 chr21 28091999 28092281 -16815289 - AluJo SINE Alu -23 289 1 358 317 8 25 chr21 28093170 28093290 -16814280 - MER5A DNA MER1_type -2 187 70 891 311 123 39 chr21 28093462 28094303 -16813267 - HAL1 LINE L1 -111 2396 1486 529 286 94 28 chr21 28094383 28094809 -16812761 - HAL1 LINE L1 -1286 1221 768 837 252 24 5 chr21 28094833 28095039 -16812531 + MER20 DNA MER1_type 9 218 -1 242 312 71 13 chr21 28095578 28095732 -16811838 + L1ME LINE L1 5725 5887 -234 291 274 84 70 chr21 28095752 28095967 -16811603 + L1MC/D LINE L1 5577 5794 -2014 1303 174 80 77 chr21 28096057 28096356 -16811214 - AluJb SINE Alu -7 305 6 204 280 10 50 chr21 28097320 28097420 -16810150 + GA-rich Low_complexity Low_complexity 5 100 0 2025 141 3 7 chr21 28097508 28097989 -16809581 + AluSp SINE Alu 1 313 0 359 175 25 0 chr21 28097992 28098072 -16809498 + GA-rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chr21 28099897 28099925 -16807645 + AT_rich Low_complexity Low_complexity 1 28 0 884 198 0 16 chr21 28099960 28100152 -16807418 + MER53 DNA DNA 1 189 0 49 76 0 0 chr21 28100477 28100582 -16806988 + AT_rich Low_complexity Low_complexity 1 105 0 213 310 76 76 chr21 28100735 28101051 -16806519 + L2 LINE L2 2662 2977 -337 204 311 87 29 chr21 28101157 28101260 -16806310 + L2 LINE L2 3182 3290 -23 573 276 9 63 chr21 28101273 28101494 -16806076 - MIR SINE MIR 0 262 54 2093 137 0 0 chr21 28101767 28102067 -16805503 - AluJb SINE Alu -7 305 6 664 132 0 0 chr21 28102084 28102198 -16805372 - L1MA8 LINE L1 -6 6285 6172 2123 53 4 4 chr21 28102198 28102460 -16805110 - AluY SINE Alu -8 303 42 2292 122 45 14 chr21 28102568 28102921 -16804649 - THE1B LTR MaLR 0 364 1 441 316 120 27 chr21 28103362 28103587 -16803983 + MIR SINE MIR 14 259 -3 1530 101 84 135 chr21 28103828 28104183 -16803387 - MER1B DNA MER1_type 0 337 1 198 281 35 0 chr21 28104184 28104241 -16803329 - L2 LINE L2 -515 2799 2741 1270 167 23 49 chr21 28104241 28104505 -16803065 + MER92B LTR ERV1 1 257 -379 940 145 7 0 chr21 28104500 28104638 -16802932 - Charlie3 DNA MER1_type -2571 139 1 * 317 316 37 7 chr21 28105644 28105780 -16801790 - MIR SINE MIR -13 249 110 333 0 0 0 chr21 28106123 28106160 -16801410 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr21 28106219 28106240 -16801330 + AT_rich Low_complexity Low_complexity 1 21 0 238 309 53 21 chr21 28106242 28106336 -16801234 + MIR SINE MIR 150 246 -16 211 264 113 0 chr21 28108322 28108375 -16799195 - L2 LINE L2 -11 3261 3203 1744 189 41 23 chr21 28108568 28108912 -16798658 + MLT1A1 LTR MaLR 1 350 -15 817 183 7 0 chr21 28108904 28109046 -16798524 + MLT1A1 LTR MaLR 223 365 0 * 338 331 38 34 chr21 28109073 28109336 -16798234 - L2 LINE L2 -835 2479 2216 224 278 0 0 chr21 28111099 28111153 -16796417 + L2 LINE L2 3255 3308 -5 186 43 0 0 chr21 28111388 28111411 -16796159 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 218 291 0 0 chr21 28111446 28111501 -16796069 - MIR SINE MIR -137 125 71 255 350 88 22 chr21 28111598 28111735 -16795835 - MIR3 SINE MIR -61 147 2 225 393 68 0 chr21 28111929 28112046 -16795524 - L2 LINE L2 -11 3261 3137 246 373 32 16 chr21 28112772 28112898 -16794672 + L2 LINE L2 2956 3083 -189 22 0 0 0 chr21 28113739 28113761 -16793809 + AT_rich Low_complexity Low_complexity 1 22 0 226 271 34 0 chr21 28114725 28114784 -16792786 - MIR SINE MIR -110 152 92 449 151 0 85 chr21 28115089 28115195 -16792375 - L1MA6 LINE L1 -5 6295 6199 462 287 27 20 chr21 28117621 28117771 -16789799 - MLT1L LTR MaLR -80 535 385 286 225 64 92 chr21 28117838 28118011 -16789559 - MLT1J LTR MaLR -336 175 8 198 0 0 0 chr21 28118149 28118171 -16789399 + (TCCC)n Simple_repeat Simple_repeat 2 23 0 * 1037 116 6 0 chr21 28118170 28118334 -16789236 + (TTTC)n Simple_repeat Simple_repeat 1 165 0 1673 167 3 24 chr21 28118337 28118630 -16788940 - AluJb SINE Alu -25 287 1 32 0 0 0 chr21 28119956 28119988 -16787582 + AT_rich Low_complexity Low_complexity 1 32 0 223 235 0 0 chr21 28120811 28120862 -16786708 + (CA)n Simple_repeat Simple_repeat 2 52 0 1050 152 18 6 chr21 28122952 28123117 -16784453 + AluSp SINE Alu 1 167 -146 350 327 0 9 chr21 28123132 28123239 -16784331 - MIR3 SINE MIR -5 203 98 457 308 62 15 chr21 28123264 28123394 -16784176 + MIR SINE MIR 23 158 -104 608 299 0 0 chr21 28123434 28123578 -16783992 + MIR SINE MIR 2 145 -117 242 340 116 27 chr21 28123725 28123872 -16783698 - L2 LINE L2 -29 3243 3084 2039 178 28 30 chr21 28124177 28124736 -16782834 - MLT2A2 LTR ERVL 0 554 1 191 308 22 44 chr21 28124736 28124827 -16782743 - L2 LINE L2 -510 2804 2716 204 312 159 29 chr21 28124901 28125039 -16782531 + L2 LINE L2 3158 3313 0 * 392 355 68 29 chr21 28125019 28125402 -16782168 - L2 LINE L2 -633 2681 2284 376 274 65 60 chr21 28125792 28125960 -16781610 + MIR SINE MIR 23 193 -15 279 306 85 23 chr21 28125986 28126117 -16781453 + L2 LINE L2 2851 3010 -303 753 299 55 11 chr21 28126336 28126610 -16780960 + L2 LINE L2 3028 3313 0 353 282 79 19 chr21 28127741 28127899 -16779671 + MIR SINE MIR 40 205 -57 231 149 75 60 chr21 28128028 28128095 -16779475 - MIR SINE MIR -66 142 75 186 259 19 0 chr21 28128280 28128334 -16779236 - L2 LINE L2 -70 3243 3189 1078 63 0 0 chr21 28128921 28129048 -16778522 + AluSp SINE Alu 172 298 -15 272 358 12 0 chr21 28129983 28130064 -16777506 - L2 LINE L2 0 3272 3191 24707 74 10 19 chr21 28130093 28134362 -16773208 + L1PA7 LINE L1 1929 6154 0 255 336 73 9 chr21 28134484 28134594 -16772976 + L2 LINE L2 3156 3272 0 55 0 0 0 chr21 28135476 28135531 -16772039 + AT_rich Low_complexity Low_complexity 1 55 0 987 181 0 0 chr21 28135531 28135691 -16771879 - AluSg/x SINE Alu -23 289 130 2430 68 0 7 chr21 28135694 28136002 -16771568 - AluYa5 SINE Alu -5 306 1 271 108 0 6 chr21 28135967 28136019 -16771551 - Alu SINE Alu -265 35 1 21 0 0 0 chr21 28137091 28137112 -16770458 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr21 28137212 28137235 -16770335 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 343 207 0 0 chr21 28138128 28138186 -16769384 - MIR SINE MIR 0 262 205 27 29 0 0 chr21 28139104 28139138 -16768432 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr21 28139516 28139567 -16768003 + AT_rich Low_complexity Low_complexity 1 51 0 966 104 28 0 chr21 28140116 28140260 -16767310 + L1MA1 LINE L1 6149 6296 -6 26 30 0 0 chr21 28140260 28140293 -16767277 + AT_rich Low_complexity Low_complexity 1 33 0 604 292 96 32 chr21 28141129 28141348 -16766222 - MIR SINE MIR -19 243 11 832 269 76 49 chr21 28141382 28141624 -16765946 + L1MC4 LINE L1 7514 7775 -267 1821 193 13 24 chr21 28141624 28142002 -16765568 + MLT1A2 LTR MaLR 1 374 0 832 269 76 49 chr21 28142002 28142209 -16765361 + L1MC4 LINE L1 7775 7975 -67 2927 80 85 2 chr21 28142209 28142646 -16764924 + LTR19A LTR ERV1 1 473 -13 502 287 120 5 chr21 28143233 28143449 -16764121 + MIR SINE MIR 20 260 -2 198 0 0 0 chr21 28143751 28143773 -16763797 + (TA)n Simple_repeat Simple_repeat 2 23 0 383 319 46 65 chr21 28144078 28144108 -16763462 + MLT1L LTR MaLR 126 155 -460 924 216 18 53 chr21 28144108 28144335 -16763235 - MER20 DNA MER1_type 0 219 1 383 319 46 65 chr21 28144335 28144564 -16763006 + MLT1L LTR MaLR 155 380 -235 253 230 56 79 chr21 28144643 28144769 -16762801 + MLT1J2 LTR MaLR 11 133 -317 294 210 0 0 chr21 28144900 28144962 -16762608 + MLT1I LTR MaLR 323 384 -25 219 36 0 0 chr21 28145264 28145292 -16762278 + (CA)n Simple_repeat Simple_repeat 2 29 0 265 200 0 0 chr21 28145488 28145538 -16762032 - L2 LINE L2 0 3313 3264 192 222 148 19 chr21 28145500 28145554 -16762016 - MIR SINE MIR -7 255 195 * 225 235 282 27 chr21 28145760 28145909 -16761661 + MIR SINE MIR 44 230 -32 301 297 14 21 chr21 28147742 28147887 -16759683 - Charlie2a DNA MER1_type 0 2862 2719 243 192 0 0 chr21 28147961 28148013 -16759557 - Charlie2a DNA MER1_type -1299 1563 1512 269 268 14 0 chr21 28148096 28148167 -16759403 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 221 358 24 24 chr21 28148171 28148294 -16759276 + MIR SINE MIR 63 185 -77 494 329 19 19 chr21 28148358 28148568 -16759002 - MIR SINE MIR 0 262 53 700 300 135 32 chr21 28148973 28149439 -16758131 - LTR33 LTR ERVL -7 514 1 223 362 66 46 chr21 28150448 28150600 -16756970 + L2 LINE L2 2904 3058 -214 180 338 208 0 chr21 28150728 28150805 -16756765 + L2 LINE L2 3155 3247 -25 998 189 5 26 chr21 28151123 28151314 -16756256 - MER20 DNA MER1_type -9 210 24 21 0 0 0 chr21 28151727 28151748 -16755822 + AT_rich Low_complexity Low_complexity 1 21 0 2319 88 10 0 chr21 28154157 28154463 -16753107 + AluSg SINE Alu 1 309 -1 280 329 0 0 chr21 28156608 28156687 -16750883 + MIR3 SINE MIR 101 179 -29 217 250 14 0 chr21 28156711 28156783 -16750787 + (TA)n Simple_repeat Simple_repeat 1 73 0 324 254 34 17 chr21 28157334 28157511 -16750059 + (TA)n Simple_repeat Simple_repeat 1 180 0 213 246 72 0 chr21 28157545 28157683 -16749887 + (TA)n Simple_repeat Simple_repeat 1 148 0 2397 93 0 0 chr21 28157690 28158000 -16749570 + AluSg SINE Alu 1 310 0 338 113 0 32 chr21 28158001 28158063 -16749507 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 1159 114 27 16 chr21 28158108 28158292 -16749278 + MER30B DNA MER1_type 1 186 -4 2683 112 5 39 chr21 28159703 28160142 -16747428 + L1MA6 LINE L1 5447 5870 -430 2285 200 29 15 chr21 28161082 28161695 -16745875 - L1MC3 LINE L1 0 7785 6998 686 236 207 20 chr21 28161695 28161898 -16745672 - L1MC4 LINE L1 -1129 6913 6673 26 50 0 0 chr21 28161975 28162015 -16745555 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr21 28162588 28162609 -16744961 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr21 28162648 28162706 -16744864 + AT_rich Low_complexity Low_complexity 1 58 0 385 100 22 56 chr21 28163224 28163314 -16744256 - L1PA11 LINE L1 0 6174 6088 310 225 9 108 chr21 28163529 28163640 -16743930 + MER103 DNA DNA 17 116 -50 195 42 0 0 chr21 28163716 28163740 -16743830 + (GA)n Simple_repeat Simple_repeat 2 25 0 289 335 66 7 chr21 28163770 28163922 -16743648 - MIR SINE MIR -52 210 50 190 268 80 89 chr21 28164744 28164856 -16742714 + MIR SINE MIR 1 111 -151 358 217 47 93 chr21 28165409 28165538 -16742032 + L2 LINE L2 3191 3313 0 201 317 69 59 chr21 28165861 28165962 -16741608 - MIR SINE MIR -57 205 104 224 174 22 0 chr21 28166019 28166065 -16741505 + (TAA)n Simple_repeat Simple_repeat 2 48 0 272 356 59 25 chr21 28166070 28166272 -16741298 - MIR SINE MIR -31 231 23 200 186 17 0 chr21 28167071 28167130 -16740440 + (TTGG)n Simple_repeat Simple_repeat 4 63 0 22 0 0 0 chr21 28168009 28168031 -16739539 + AT_rich Low_complexity Low_complexity 1 22 0 396 55 0 0 chr21 28170216 28170271 -16737299 + (CA)n Simple_repeat Simple_repeat 1 55 0 234 376 30 30 chr21 28171047 28171180 -16736390 - L2 LINE L2 0 3272 3140 * 474 313 119 45 chr21 28171149 28171501 -16736069 + L3 LINE CR1 1018 1395 -182 470 224 96 8 chr21 28171519 28171644 -16735926 + AluJo SINE Alu 1 136 -176 264 292 14 0 chr21 28171692 28171764 -16735806 - L2 LINE L2 0 3313 3241 258 218 54 75 chr21 28172195 28172355 -16735215 + MLT1L LTR MaLR 5 255 -268 283 224 15 0 chr21 28172555 28172622 -16734948 + MLT1I LTR MaLR 340 407 -2 417 206 76 0 chr21 28172624 28172716 -16734854 + MIR SINE MIR 109 207 -55 416 316 105 63 chr21 28173650 28174069 -16733501 + L2 LINE L2 2131 2578 -736 911 224 9 27 chr21 28174069 28174288 -16733282 - MER20 DNA MER1_type -2 217 3 416 316 105 63 chr21 28174288 28174390 -16733180 + L2 LINE L2 2578 2674 -640 345 368 15 0 chr21 28174476 28174609 -16732961 + L2 LINE L2 3179 3313 0 321 26 0 0 chr21 28174963 28175001 -16732569 + (A)n Simple_repeat Simple_repeat 1 38 0 322 369 11 21 chr21 28175130 28175317 -16732253 + MIR3 SINE MIR 11 195 -13 639 293 76 13 chr21 28175398 28175623 -16731947 - MIR SINE MIR -4 258 20 427 231 0 0 chr21 28175631 28175739 -16731831 - L1MB5 LINE L1 -6 6168 6061 494 309 39 6 chr21 28175742 28175920 -16731650 - L2 LINE L2 -431 2883 2700 1825 119 97 4 chr21 28176027 28176295 -16731275 + AluSx SINE Alu 1 293 -19 450 285 98 33 chr21 28176347 28176561 -16731009 - MIR SINE MIR 0 262 35 248 321 97 70 chr21 28176550 28176861 -16730709 - L2 LINE L2 -203 3069 2742 * 311 316 120 47 chr21 28176981 28177449 -16730121 + L2 LINE L2 2812 3313 0 381 242 113 56 chr21 28177915 28178146 -16729424 - HAL1 LINE L1 0 2507 2264 1832 188 3 0 chr21 28178203 28178511 -16729059 - AluJb SINE Alu -1 311 3 273 186 0 0 chr21 28178612 28178718 -16728852 + CT-rich Low_complexity Low_complexity 1 106 0 1011 278 143 43 chr21 28178809 28179346 -16728224 - HAL1 LINE L1 -1336 1171 581 247 197 212 0 chr21 28179644 28179710 -16727860 - HAL1 LINE L1 -2425 82 3 563 203 51 17 chr21 28179751 28179869 -16727701 + FLAM_A SINE Alu 3 124 -9 1022 223 30 21 chr21 28179882 28180115 -16727455 + AluJo SINE Alu 1 235 -77 39 0 0 0 chr21 28180140 28180179 -16727391 + AT_rich Low_complexity Low_complexity 1 39 0 752 179 6 0 chr21 28180286 28180442 -16727128 + CT-rich Low_complexity Low_complexity 3 159 0 927 246 32 0 chr21 28180503 28180723 -16726847 + LTR16C LTR ERVL 254 480 -11 941 108 0 0 chr21 28183360 28183490 -16724080 + AluSg/x SINE Alu 180 309 -1 205 363 12 0 chr21 28183571 28183651 -16723919 + MIR3 SINE MIR 115 195 -13 252 316 101 43 chr21 28183716 28183994 -16723576 - L2 LINE L2 -590 2724 2431 1819 42 0 5 chr21 28184626 28184838 -16722732 - AluY SINE Alu -15 296 86 318 26 0 0 chr21 28184838 28184877 -16722693 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr21 28186399 28186429 -16721141 + AT_rich Low_complexity Low_complexity 1 30 0 293 216 227 0 chr21 28186457 28186554 -16721016 - L1ME4a LINE L1 -38 6083 5965 1424 142 34 0 chr21 28186776 28187043 -16720527 - L1MA7 LINE L1 -5 6286 6011 562 326 73 9 chr21 28187531 28187764 -16719806 - MIR SINE MIR -14 248 1 209 271 14 43 chr21 28187972 28188042 -16719528 - MIR SINE MIR -181 81 14 288 256 45 90 chr21 28188045 28188126 -16719444 + MIR3 SINE MIR 81 155 -53 2227 125 19 27 chr21 28188126 28188493 -16719077 + THE1B LTR MaLR 1 364 0 288 256 45 90 chr21 28188493 28188544 -16719026 + MIR3 SINE MIR 155 207 -1 732 297 170 3 chr21 28188637 28188984 -16718586 - LTR16C LTR ERVL -1 490 86 23 54 0 0 chr21 28189780 28189817 -16717753 + AT_rich Low_complexity Low_complexity 1 37 0 28 48 0 0 chr21 28190156 28190198 -16717372 + AT_rich Low_complexity Low_complexity 1 42 0 500 326 65 20 chr21 28190364 28190712 -16716858 + MLT1J LTR MaLR 3 329 -121 895 227 82 26 chr21 28191591 28191855 -16715715 - MLT1C LTR MaLR 0 467 189 1564 153 82 7 chr21 28191855 28192362 -16715208 - LTR1B LTR ERV1 0 826 243 699 158 0 0 chr21 28192374 28192488 -16715082 - LTR1B LTR ERV1 -712 114 1 525 216 126 80 chr21 28192488 28192672 -16714898 - MLT1C LTR MaLR -274 193 1 23 68 0 0 chr21 28193134 28193178 -16714392 + AT_rich Low_complexity Low_complexity 1 44 0 197 250 146 0 chr21 28193982 28194030 -16713540 + L2 LINE L2 3245 3299 -14 1728 186 11 42 chr21 28194035 28194412 -16713158 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr21 28195824 28195846 -16711724 + AT_rich Low_complexity Low_complexity 1 22 0 201 413 73 0 chr21 28196494 28196603 -16710967 - MIR SINE MIR -75 187 71 308 274 12 0 chr21 28197310 28197394 -16710176 - L2 LINE L2 0 3313 3229 891 297 86 79 chr21 28198229 28199455 -16708115 + L1MEc LINE L1 202 1435 -4961 378 0 0 0 chr21 28199460 28199502 -16708068 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 288 276 110 3 chr21 28199590 28199732 -16707838 + L1ME3 LINE L1 5844 5995 -169 1972 139 14 58 chr21 28199771 28200257 -16707313 + MER4A LTR ERV1 1 422 -242 552 135 184 55 chr21 28200277 28200440 -16707130 + MER4C LTR ERV1 282 465 0 291 261 19 0 chr21 28200440 28200559 -16707011 + L1ME3 LINE L1 6030 6155 -7 192 135 0 0 chr21 28200715 28200752 -16706818 + (TA)n Simple_repeat Simple_repeat 1 37 0 24 53 0 0 chr21 28201523 28201561 -16706009 + AT_rich Low_complexity Low_complexity 1 38 0 907 179 31 0 chr21 28201569 28201764 -16705806 - L1MA7 LINE L1 -2 6289 6089 231 339 16 0 chr21 28201818 28201942 -16705628 + L1MDa LINE L1 34 159 -6381 284 261 35 26 chr21 28202449 28202564 -16705006 + L1MDa LINE L1 789 904 -5626 954 284 72 51 chr21 28202613 28202768 -16704802 + L1MDa LINE L1 854 1004 -5536 210 37 0 0 chr21 28202768 28202795 -16704775 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 954 284 72 51 chr21 28202795 28203520 -16704050 + L1MDa LINE L1 1004 1724 -4816 * 2231 261 37 16 chr21 28203515 28203609 -16703961 + L1ME1 LINE L1 5510 5600 -566 2137 180 14 25 chr21 28203609 28204047 -16703523 + Tigger2a DNA MER2_type 2 434 0 2231 261 37 16 chr21 28204047 28204595 -16702975 + L1ME1 LINE L1 5600 6166 0 351 285 128 84 chr21 28204812 28205430 -16702140 + L1M4 LINE L1 4385 5029 -1117 2006 114 3 14 chr21 28205435 28205732 -16701838 + AluSx SINE Alu 1 294 -18 246 292 0 0 chr21 28206318 28206383 -16701187 + MIR SINE MIR 194 258 -4 406 329 36 0 chr21 28206589 28206729 -16700841 + MIR SINE MIR 65 209 -53 821 315 92 12 chr21 28206993 28207494 -16700076 + L1MC4 LINE L1 7120 7660 -382 348 226 32 0 chr21 28207749 28207842 -16699728 + L1MC4 LINE L1 7914 8009 -33 252 200 0 0 chr21 28208563 28208618 -16698952 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr21 28209176 28209197 -16698373 + AT_rich Low_complexity Low_complexity 1 21 0 545 100 0 0 chr21 28210288 28210368 -16697202 + MADE1 DNA Mariner 1 80 0 1117 212 19 108 chr21 28210498 28210870 -16696700 + MLT1A1 LTR MaLR 1 339 -26 23 0 0 0 chr21 28211736 28211759 -16695811 + AT_rich Low_complexity Low_complexity 1 23 0 624 216 180 0 chr21 28212713 28212880 -16694690 - MER20 DNA MER1_type -19 200 4 908 313 13 10 chr21 28213175 28213497 -16694073 + L1MD2 LINE L1 44 340 -6200 189 0 0 0 chr21 28213556 28213577 -16693993 + (CAG)n Simple_repeat Simple_repeat 3 23 0 1914 222 53 100 chr21 28213701 28214979 -16692591 + L1MD2 LINE L1 783 1973 -4567 2150 124 50 14 chr21 28214979 28215341 -16692229 + THE1C LTR MaLR 1 375 0 1110 299 199 48 chr21 28215358 28216305 -16691265 + MER52A LTR ERV1 666 1755 0 3805 272 70 22 chr21 28216405 28218729 -16688841 + L1MD2 LINE L1 1981 4407 -2133 3858 248 42 16 chr21 28218737 28220482 -16687088 + L1MD2 LINE L1 4956 6731 -22 318 289 99 28 chr21 28220867 28221009 -16686561 - MLT1J LTR MaLR -29 482 331 293 73 0 0 chr21 28221134 28221175 -16686395 + L1MA9 LINE L1 5785 5825 -343 575 170 0 0 chr21 28221175 28221269 -16686301 + AluJb SINE Alu 205 298 -14 1449 194 41 23 chr21 28221269 28221706 -16685864 + L1MA9 LINE L1 5820 6312 0 921 280 75 44 chr21 28225653 28225946 -16681624 + MLT2E LTR ERVL 30 331 -297 228 274 133 9 chr21 28226049 28226162 -16681408 - MLT1A1 LTR MaLR -3 552 426 228 267 33 22 chr21 28226367 28226457 -16681113 + LTR16B LTR ERVL 359 449 -15 890 268 88 12 chr21 28226462 28226560 -16681010 + L1M4 LINE L1 3346 3435 -2711 3474 73 4 0 chr21 28226560 28227011 -16680559 + MLT2A2 LTR ERVL 1 453 0 890 268 88 12 chr21 28227011 28227322 -16680248 + L1M4 LINE L1 3435 3786 -2360 836 214 29 85 chr21 28227324 28227605 -16679965 + MLT2B1 LTR ERVL 1 265 -255 510 309 59 0 chr21 28228899 28229051 -16678519 - MER63A DNA MER1_type 0 210 50 189 0 0 0 chr21 28229398 28229419 -16678151 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 555 159 89 83 chr21 28232725 28232882 -16674688 + MER50 LTR ERV1 10 167 -567 1007 144 15 77 chr21 28232972 28233167 -16674403 + AluSx SINE Alu 1 183 -129 1253 174 103 53 chr21 28233169 28233508 -16674062 + MER50 LTR ERV1 358 713 -21 496 258 58 66 chr21 28234340 28234634 -16672936 - Charlie8 DNA MER1_type -990 1427 60 373 319 53 9 chr21 28234697 28234810 -16672760 - L2 LINE L2 -7 3265 3148 24 53 0 0 chr21 28235306 28235344 -16672226 + AT_rich Low_complexity Low_complexity 1 38 0 198 143 0 0 chr21 28235695 28235730 -16671840 + (TTC)n Simple_repeat Simple_repeat 2 36 0 2128 107 0 23 chr21 28236858 28237168 -16670402 + AluSq SINE Alu 1 303 -10 296 259 25 0 chr21 28237249 28237330 -16670240 - MIR SINE MIR -15 247 165 1755 198 11 23 chr21 28237414 28237767 -16669803 - MLT1A1 LTR MaLR -15 350 2 2284 94 3 3 chr21 28238646 28238955 -16668615 + AluSc SINE Alu 1 309 0 219 69 0 0 chr21 28240260 28240289 -16667281 + (A)n Simple_repeat Simple_repeat 1 29 0 639 256 84 92 chr21 28241400 28241583 -16665987 - MIR SINE MIR 0 262 79 1694 168 0 21 chr21 28241583 28241869 -16665701 + AluJb SINE Alu 3 282 -30 219 69 0 0 chr21 28241872 28241901 -16665669 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 639 256 84 92 chr21 28241901 28241963 -16665607 - MIR SINE MIR -185 77 15 464 300 83 55 chr21 28243383 28244168 -16663402 + L1MCc LINE L1 1350 2297 -4644 338 344 52 13 chr21 28244186 28244340 -16663230 + L1MCc LINE L1 2409 2568 -4554 225 227 34 67 chr21 28244408 28244527 -16663043 + L1MCc LINE L1 2679 2793 -4329 503 287 7 0 chr21 28244557 28244707 -16662863 + L1MCc LINE L1 2903 3053 -4069 233 191 43 0 chr21 28244819 28244866 -16662704 + L2 LINE L2 3224 3272 0 22 0 0 0 chr21 28245902 28245924 -16661646 + AT_rich Low_complexity Low_complexity 1 22 0 50 83 0 0 chr21 28246022 28246142 -16661428 + AT_rich Low_complexity Low_complexity 1 120 0 1668 271 49 10 chr21 28246829 28247323 -16660247 - ERVL LTR ERVL -2996 2768 2256 1106 83 7 0 chr21 28247323 28247468 -16660102 - AluSg/x SINE Alu -10 302 157 1610 281 44 44 chr21 28247470 28248012 -16659558 - ERVL LTR ERVL -3501 2263 1719 1535 158 92 4 chr21 28248012 28248284 -16659286 - AluSg SINE Alu -14 296 1 1610 281 44 44 chr21 28248284 28248406 -16659164 - ERVL LTR ERVL -4044 1720 1599 343 307 20 0 chr21 28248403 28248504 -16659066 - ERVL LTR ERVL -3598 2166 2064 * 549 325 20 52 chr21 28248520 28248868 -16658702 - ERVL LTR ERVL -4085 1569 1233 283 275 0 11 chr21 28248943 28249034 -16658536 + L1MC4 LINE L1 6614 6703 -1339 374 204 11 45 chr21 28249063 28249151 -16658419 + L1M4 LINE L1 5629 5713 -465 2053 196 42 53 chr21 28249155 28249700 -16657870 + L1MB8 LINE L1 5635 6173 -5 278 263 35 44 chr21 28249807 28249921 -16657649 - ERVL LTR ERVL -5076 688 576 1193 287 43 21 chr21 28250402 28250824 -16656746 - MLT2E LTR ERVL 0 628 198 1875 197 11 11 chr21 28251514 28251879 -16655691 + MLT1A1 LTR MaLR 1 365 0 1663 199 114 143 chr21 28252011 28252368 -16655202 - MER69 DNA AcHobo -8 2518 2152 782 142 21 14 chr21 28252368 28252509 -16655061 - FLAM_C SINE Alu -1 142 1 1663 199 114 143 chr21 28252509 28253111 -16654459 - MER69 DNA AcHobo -374 2152 1451 2173 123 3 0 chr21 28253302 28253631 -16653939 + AluSx SINE Alu 1 330 0 31 0 0 24 chr21 28254461 28254477 -16653093 + AT_rich Low_complexity Low_complexity 1 16 -25 1472 91 61 5 chr21 28254477 28254675 -16652895 + AluSg/x SINE Alu 84 292 -20 31 0 0 24 chr21 28254675 28254700 -16652870 + AT_rich Low_complexity Low_complexity 16 41 0 3856 276 31 41 chr21 28254961 28256064 -16651506 - MER69 DNA AcHobo -1115 1411 324 1598 202 52 6 chr21 28256064 28256391 -16651179 - MER61A LTR ERV1 0 343 2 3856 276 31 41 chr21 28256391 28256710 -16650860 - MER69 DNA AcHobo -2202 324 3 289 314 89 8 chr21 28259215 28259339 -16648231 - L2 LINE L2 0 3313 3180 1220 169 52 55 chr21 28259518 28259843 -16647727 - MER33 DNA MER1_type 0 324 1 444 283 58 8 chr21 28259938 28260058 -16647512 - L2 LINE L2 0 3313 3188 855 269 88 32 chr21 28260561 28260936 -16646634 - MSTD LTR MaLR 0 396 1 506 247 46 23 chr21 28261020 28261194 -16646376 + MER5B DNA MER1_type 1 178 0 530 261 150 0 chr21 28261561 28261714 -16645856 + MER5A DNA MER1_type 13 188 -1 2248 108 0 3 chr21 28262326 28262631 -16644939 - AluSx SINE Alu -8 304 1 291 54 0 0 chr21 28262844 28262862 -16644708 + (TG)n Simple_repeat Simple_repeat 1 55 0 291 54 0 0 chr21 28262862 28262899 -16644671 + (TG)n Simple_repeat Simple_repeat 2 38 0 267 290 0 10 chr21 28262928 28263028 -16644542 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 383 285 158 66 chr21 28263137 28263575 -16643995 + MLT1K LTR MaLR 108 585 -3 475 227 27 53 chr21 28263602 28263752 -16643818 - LTR27 LTR ERV1 0 636 491 2357 192 8 30 chr21 28263809 28264314 -16643256 - LTR27 LTR ERV1 -140 496 3 545 221 122 17 chr21 28264523 28264695 -16642875 + MLT1D LTR MaLR 313 502 -3 198 429 9 0 chr21 28265095 28265207 -16642363 + MIR SINE MIR 19 131 -77 863 87 5 60 chr21 28265208 28265393 -16642177 + (TCTCC)n Simple_repeat Simple_repeat 5 179 0 406 233 0 0 chr21 28265394 28265467 -16642103 + C-rich Low_complexity Low_complexity 5 77 0 1477 150 15 22 chr21 28265726 28265999 -16641571 + L1MC1 LINE L1 6063 6333 0 617 253 104 55 chr21 28266556 28266700 -16640870 - MER58A DNA MER1_type -2208 212 54 1567 38 0 0 chr21 28266700 28266883 -16640687 - AluY SINE Alu -2 309 127 617 253 104 55 chr21 28266883 28266940 -16640630 - MER58A DNA MER1_type -2366 54 1 241 118 39 0 chr21 28267265 28267316 -16640254 + (TA)n Simple_repeat Simple_repeat 1 53 0 2483 83 0 3 chr21 28268398 28268710 -16638860 - AluY SINE Alu 0 311 1 207 147 0 73 chr21 28269666 28269734 -16637836 + (TTC)n Simple_repeat Simple_repeat 1 63 0 429 232 20 33 chr21 28270267 28270418 -16637152 + L1MC4 LINE L1 6473 6621 -1421 592 220 19 11 chr21 28270447 28270626 -16636944 - L1M LINE L1 -837 5309 5143 1705 78 0 0 chr21 28270627 28270833 -16636737 + AluY SINE Alu 10 215 -96 1471 149 110 65 chr21 28270833 28271262 -16636308 + LTR7 LTR ERV1 1 448 -2 606 72 52 0 chr21 28271263 28271360 -16636210 + AluY SINE Alu 210 311 0 871 200 5 23 chr21 28271362 28271577 -16635993 - L1M4 LINE L1 -995 5649 5439 397 236 56 45 chr21 28271762 28272001 -16635569 - L1M1 LINE L1 -3938 3627 3412 3281 248 71 35 chr21 28272061 28274016 -16633554 - L1M4 LINE L1 -4543 2103 27 731 141 25 0 chr21 28275184 28275305 -16632265 + AluJb SINE Alu 1 124 -188 207 0 0 0 chr21 28275305 28275328 -16632242 + (CAT)n Simple_repeat Simple_repeat 2 24 0 348 164 0 0 chr21 28276940 28277007 -16630563 + (TG)n Simple_repeat Simple_repeat 2 68 0 4075 133 5 5 chr21 28278605 28279239 -16628331 + MER41B LTR ERV1 2 635 0 25 31 0 0 chr21 28279265 28279297 -16628273 + AT_rich Low_complexity Low_complexity 1 32 0 453 234 156 52 chr21 28279420 28279509 -16628061 - MER5A DNA MER1_type -7 182 104 2330 107 0 0 chr21 28279509 28279818 -16627752 - AluSg SINE Alu 0 310 2 453 234 156 52 chr21 28279818 28279882 -16627688 - MER5A DNA MER1_type -85 104 13 4790 93 11 0 chr21 28279915 28280568 -16627002 + PABL_A LTR ERV1 1 660 0 228 278 133 80 chr21 28280586 28280737 -16626833 + MER5B DNA MER1_type 17 175 -3 240 374 44 1 chr21 28281030 28281193 -16626377 - MIR SINE MIR -67 141 25 727 254 71 5 chr21 28281964 28282161 -16625409 + MIR SINE MIR 28 237 -25 288 266 38 82 chr21 28283483 28283641 -16623929 + MLT1L LTR MaLR 7 157 -458 824 169 91 12 chr21 28283643 28283885 -16623685 - Charlie1a DNA MER1_type -4 1451 1191 5505 120 12 1 chr21 28283892 28284719 -16622851 - L1PA13 LINE L1 -7 6156 5321 4453 217 34 46 chr21 28284719 28284947 -16622623 - Charlie1a DNA MER1_type -1552 1209 980 1981 107 7 28 chr21 28284947 28285238 -16622332 + AluSg SINE Alu 12 296 -14 4453 217 34 46 chr21 28285238 28286232 -16621338 - Charlie1a DNA MER1_type -1781 980 1 299 315 159 19 chr21 28286232 28286482 -16621088 + MLT1L LTR MaLR 145 432 -183 229 319 17 25 chr21 28286593 28286712 -16620858 + MLT1L LTR MaLR 440 557 -58 796 118 118 0 chr21 28286919 28287054 -16620516 - L1MA2 LINE L1 0 6304 6154 2738 99 0 21 chr21 28287140 28287523 -16620047 - THE1C LTR MaLR 0 375 1 180 0 0 0 chr21 28287711 28287731 -16619839 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2048 110 7 3 chr21 28288021 28288312 -16619258 + AluSg SINE Alu 1 292 -18 2331 119 0 0 chr21 28288391 28288701 -16618869 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr21 28289011 28289033 -16618537 + AT_rich Low_complexity Low_complexity 1 22 0 2185 121 30 3 chr21 28289034 28289373 -16618197 - L1PA14 LINE L1 -14 6147 5800 2442 74 7 0 chr21 28290653 28290962 -16616608 - AluY SINE Alu 0 311 1 218 385 101 22 chr21 28291399 28291677 -16615893 + L2 LINE L2 3005 3304 -9 492 236 146 55 chr21 28291993 28292137 -16615433 + MER5A DNA MER1_type 10 173 -16 2090 117 3 0 chr21 28292137 28292475 -16615095 + AluSp SINE Alu 1 339 0 492 236 146 55 chr21 28292475 28292494 -16615076 + MER5A DNA MER1_type 173 189 0 246 341 0 12 chr21 28293021 28293106 -16614464 - MIR SINE MIR -95 167 84 370 234 122 69 chr21 28293152 28293340 -16614230 - L2 LINE L2 0 3313 3116 223 240 20 0 chr21 28293708 28293758 -16613812 + L2 LINE L2 3263 3313 0 256 280 48 72 chr21 28296251 28296458 -16611112 + L1ME3A LINE L1 5963 6164 -6 648 295 72 13 chr21 28296729 28297271 -16610299 - L1M4 LINE L1 -2530 3616 3043 228 178 0 41 chr21 28297325 28297398 -16610172 - L1ME LINE L1 -5198 872 803 1038 135 0 26 chr21 28297400 28297579 -16609991 - AluSg/x SINE Alu 0 306 132 1726 286 28 38 chr21 28297580 28298342 -16609228 - L1ME LINE L1 -5269 801 48 523 279 64 91 chr21 28301600 28301765 -16605805 - MLT1L LTR MaLR -18 597 429 1670 45 10 0 chr21 28301765 28301963 -16605607 - AluY SINE Alu -16 295 96 523 279 64 91 chr21 28301963 28302237 -16605333 - MLT1L LTR MaLR -186 429 170 1720 218 11 6 chr21 28303652 28304015 -16603555 - MLT1A1 LTR MaLR 0 365 1 22 56 0 0 chr21 28304745 28304781 -16602789 + AT_rich Low_complexity Low_complexity 1 36 0 2103 144 52 0 chr21 28304857 28305203 -16602367 + THE1B LTR MaLR 1 364 0 11215 117 2 1 chr21 28305203 28306781 -16600789 + THE1B-int LTR MaLR 1 1580 0 2095 131 87 0 chr21 28306781 28307116 -16600454 + THE1B LTR MaLR 1 364 0 1828 198 104 45 chr21 28307179 28307650 -16599920 + MLT1D LTR MaLR 1 499 -6 257 151 19 0 chr21 28307776 28307829 -16599741 + GA-rich Low_complexity Low_complexity 2 55 0 1054 157 0 0 chr21 28308603 28308756 -16598814 - AluJo SINE Alu -75 237 85 21 0 0 0 chr21 28309200 28309221 -16598349 + AT_rich Low_complexity Low_complexity 1 21 0 1256 235 91 81 chr21 28309319 28309791 -16597779 - MLT1H LTR MaLR 0 549 73 189 0 0 0 chr21 28310819 28310840 -16596730 + (TG)n Simple_repeat Simple_repeat 2 22 0 1670 130 16 0 chr21 28310974 28311221 -16596349 - AluSg SINE Alu -21 289 39 467 174 39 97 chr21 28312292 28312447 -16595123 + MER53 DNA DNA 1 146 -43 235 176 20 0 chr21 28313238 28313289 -16594281 + T-rich Low_complexity Low_complexity 2 53 0 2731 157 10 30 chr21 28313322 28313818 -16593752 + MER66B LTR ERV1 1 486 0 26 30 0 0 chr21 28314779 28314812 -16592758 + AT_rich Low_complexity Low_complexity 1 33 0 341 286 5 43 chr21 28314942 28315101 -16592469 - L1MC/D LINE L1 -310 5811 5671 3028 244 155 61 chr21 28315406 28317288 -16590282 + L1MCc LINE L1 10 2073 -4868 1383 209 114 30 chr21 28317288 28317719 -16589851 - MLT1C LTR MaLR 0 467 1 225 0 0 0 chr21 28318174 28318199 -16589371 + (TG)n Simple_repeat Simple_repeat 1 25 0 240 59 0 0 chr21 28319589 28319623 -16587947 + (TC)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr21 28319623 28319643 -16587927 + (CA)n Simple_repeat Simple_repeat 1 20 0 917 261 65 55 chr21 28319682 28320172 -16587398 + MLT1F LTR MaLR 23 517 -25 333 118 0 0 chr21 28320713 28320764 -16586806 + (CATA)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr21 28322448 28322479 -16585091 + AT_rich Low_complexity Low_complexity 1 31 0 6503 63 45 0 chr21 28322696 28324076 -16583494 + L1PA7 LINE L1 4731 6152 -2 183 338 120 49 chr21 28324253 28324395 -16583175 + L2 LINE L2 3117 3268 -4 344 306 6 50 chr21 28325593 28325753 -16581817 - MER5A DNA MER1_type -1 188 36 333 119 0 0 chr21 28325915 28325974 -16581596 + L1 LINE L1 4126 4184 -1962 * 4095 144 17 9 chr21 28325946 28326707 -16580863 + L1PA16 LINE L1 5357 6158 -8 470 312 77 34 chr21 28326733 28327031 -16580539 - L2 LINE L2 -4 3309 2999 24 53 0 0 chr21 28328722 28328760 -16578810 + AT_rich Low_complexity Low_complexity 1 38 0 223 345 108 7 chr21 28328965 28329113 -16578457 + MER5A DNA MER1_type 26 188 -1 226 333 49 83 chr21 28329455 28329719 -16577851 + L2 LINE L2 3006 3260 -12 21 71 0 0 chr21 28330446 28330488 -16577082 + AT_rich Low_complexity Low_complexity 1 42 0 251 221 39 0 chr21 28330498 28330575 -16576995 + L1ME LINE L1 5517 5596 -525 180 77 0 0 chr21 28331363 28331389 -16576181 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 237 108 0 0 chr21 28332455 28332492 -16575078 + (CA)n Simple_repeat Simple_repeat 2 38 0 409 30 20 238 chr21 28332918 28333019 -16574551 + MADE1 DNA Mariner 2 80 0 184 130 76 120 chr21 28333423 28333515 -16574055 + MER5C DNA MER1_type 235 322 -2 1780 116 0 44 chr21 28335692 28335967 -16571603 - AluY SINE Alu -9 302 40 1553 182 9 61 chr21 28335983 28336110 -16571460 + AluJo SINE Alu 1 133 -179 2150 123 3 0 chr21 28336110 28336411 -16571159 - AluSg SINE Alu -8 302 1 1553 182 9 61 chr21 28336411 28336612 -16570958 + AluJo SINE Alu 133 312 0 22 35 0 0 chr21 28336782 28336811 -16570759 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr21 28337062 28337094 -16570476 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr21 28337363 28337387 -16570183 + (CA)n Simple_repeat Simple_repeat 2 25 0 304 285 77 38 chr21 28338113 28338348 -16569222 - L1M4 LINE L1 -1221 4925 4682 * 3666 176 45 45 chr21 28338347 28339484 -16568086 - L1MB7 LINE L1 -9 6175 5043 326 358 89 20 chr21 28340376 28340678 -16566892 + L3 LINE CR1 1077 1399 -178 221 267 0 17 chr21 28341334 28341394 -16566176 + T-rich Low_complexity Low_complexity 4 62 0 533 282 37 90 chr21 28341786 28342031 -16565539 + MIR SINE MIR 31 262 0 1745 188 79 16 chr21 28342205 28342572 -16564998 - MLT1B LTR MaLR 0 390 1 13753 158 25 6 chr21 28343043 28345410 -16562160 - Tigger1 DNA MER2_type -7 2411 1 195 42 0 0 chr21 28347489 28347513 -16560057 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 681 314 165 36 chr21 28348156 28348902 -16558668 + L2 LINE L2 1866 2757 -557 22 56 0 0 chr21 28348950 28348986 -16558584 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr21 28349037 28349061 -16558509 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1873 95 65 4 chr21 28349064 28349326 -16558244 - AluSc SINE Alu -31 278 1 454 347 48 71 chr21 28349444 28349839 -16557731 + L2 LINE L2 2886 3271 -1 207 322 33 22 chr21 28350760 28350850 -16556720 - L2 LINE L2 -14 3299 3209 1962 122 36 47 chr21 28353598 28353984 -16553586 - L1MA3 LINE L1 0 6305 5924 230 159 95 103 chr21 28354020 28354146 -16553424 - MER112 DNA MER1_type -93 167 43 2050 135 7 0 chr21 28354421 28354725 -16552845 + AluSg SINE Alu 1 306 -4 243 239 84 42 chr21 28354848 28354990 -16552580 + MER103 DNA DNA 18 165 -1 211 224 0 0 chr21 28355644 28355693 -16551877 + A-rich Low_complexity Low_complexity 1 49 0 180 299 78 39 chr21 28355698 28355775 -16551795 - MER5A DNA MER1_type -49 140 61 275 331 139 6 chr21 28356426 28356592 -16550978 - MIR SINE MIR -39 223 36 1018 274 40 29 chr21 28357636 28358085 -16549485 + L1M4 LINE L1 2282 2735 -3411 2241 106 3 3 chr21 28358283 28358586 -16548984 - AluSx SINE Alu -9 303 1 1936 137 18 0 chr21 28359088 28359392 -16548178 + AluSx SINE Alu 1 309 0 2087 208 150 43 chr21 28359476 28360222 -16547348 - LTR1B LTR ERV1 0 826 1 214 178 0 0 chr21 28360349 28360394 -16547176 + A-rich Low_complexity Low_complexity 1 45 0 297 276 46 58 chr21 28360580 28360667 -16546903 + MER5A DNA MER1_type 9 94 -95 21 0 0 0 chr21 28361399 28361420 -16546150 + AT_rich Low_complexity Low_complexity 1 21 0 417 104 0 0 chr21 28361987 28362054 -16545516 - L1PB3 LINE L1 -1 6153 6087 1566 190 50 28 chr21 28362055 28362419 -16545151 - THE1C LTR MaLR -1 374 3 8032 145 50 65 chr21 28362426 28364027 -16543543 - THE1C-int LTR MaLR -1 1579 3 1643 161 64 44 chr21 28364029 28364390 -16543180 - THE1C LTR MaLR 0 375 8 4348 128 56 10 chr21 28364397 28365129 -16542441 - L1PB2 LINE L1 -64 6087 5322 1796 189 27 93 chr21 28365127 28365729 -16541841 + L1PB2 LINE L1 4759 5320 -826 * 225 286 107 9 chr21 28367282 28367394 -16540176 - MLT1I LTR MaLR -6 403 281 3162 320 105 25 chr21 28369374 28370985 -16536585 - L2 LINE L2 -1574 1740 2 1512 193 0 11 chr21 28371081 28371361 -16536209 - AluJo SINE Alu -23 289 13 484 367 94 48 chr21 28371611 28372939 -16534631 - L2 LINE L2 -433 2881 1493 31 26 0 0 chr21 28373312 28373350 -16534220 + AT_rich Low_complexity Low_complexity 1 38 0 3854 82 18 35 chr21 28373917 28374107 -16533463 + MER41A LTR ERV1 1 193 -361 2269 96 0 3 chr21 28374107 28374398 -16533172 + AluSc SINE Alu 4 293 -16 3854 82 18 35 chr21 28374398 28374771 -16532799 + MER41A LTR ERV1 193 554 0 2977 117 23 20 chr21 28374969 28375561 -16532009 + MER4E LTR ERV1 1 766 0 2540 68 0 0 chr21 28376002 28376312 -16531258 - AluY SINE Alu -1 310 1 38 61 0 0 chr21 28376349 28376415 -16531155 + AT_rich Low_complexity Low_complexity 1 66 0 2209 155 32 58 chr21 28377075 28377572 -16529998 - LTR19A LTR ERV1 -2 484 1 237 286 16 16 chr21 28378551 28378614 -16528956 + MLT1K LTR MaLR 181 243 -345 655 340 93 18 chr21 28379038 28379426 -16528144 - L3 LINE CR1 -1 1576 1160 1684 171 0 39 chr21 28379568 28379873 -16527697 - AluJo SINE Alu -19 293 1 231 236 14 0 chr21 28379883 28379955 -16527615 - L1ME4a LINE L1 -4 6117 6045 1456 215 113 42 chr21 28380335 28380837 -16526733 - MLT1F LTR MaLR 0 542 5 827 173 0 0 chr21 28380889 28381022 -16526548 - FLAM_C SINE Alu 0 133 1 591 341 135 20 chr21 28381934 28382385 -16525185 - L2 LINE L2 0 3313 2811 254 343 137 6 chr21 28382559 28382734 -16524836 - L2 LINE L2 -200 3072 2875 530 211 24 16 chr21 28383062 28383185 -16524385 + L2 LINE L2 3186 3309 -4 372 277 21 0 chr21 28383227 28383321 -16524249 - L2 LINE L2 -1 3271 3176 879 101 30 12 chr21 28383330 28383499 -16524071 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 456 284 24 30 chr21 28384909 28385078 -16522492 - MER5A DNA MER1_type -1 188 21 1399 141 47 8 chr21 28385364 28385740 -16521830 - L1M2 LINE L1 -743 5403 5142 306 223 54 54 chr21 28386777 28386889 -16520681 - MLT1H LTR MaLR -48 537 396 2270 137 22 3 chr21 28386933 28387290 -16520280 - THE1B LTR MaLR 0 364 1 349 253 33 4 chr21 28387310 28387469 -16520101 - MLT1H LTR MaLR -244 305 90 907 0 0 0 chr21 28387469 28387567 -16520003 - AluYb8 SINE Alu -8 310 213 240 317 0 0 chr21 28387567 28387627 -16519943 - MLT1H LTR MaLR -493 62 3 364 209 44 11 chr21 28388127 28388218 -16519352 + MER94 DNA DNA 4 97 -37 222 271 37 56 chr21 28388476 28388583 -16518987 - MIR SINE MIR -50 212 108 278 267 0 46 chr21 28388632 28388730 -16518840 + MIR SINE MIR 77 167 -41 203 182 68 34 chr21 28388733 28388821 -16518749 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 507 302 86 19 chr21 28390538 28390806 -16516764 - LTR33A LTR ERVL 0 523 238 268 253 76 0 chr21 28390980 28391059 -16516511 + MER97a DNA MER1_type? 253 337 -557 391 146 126 29 chr21 28391121 28391224 -16516346 + MER97c DNA MER1_type? 508 620 -470 293 157 50 35 chr21 28391395 28391586 -16515984 + (TCTA)n Simple_repeat Simple_repeat 1 193 0 1567 172 37 91 chr21 28391586 28391994 -16515576 - MLT1B LTR MaLR -4 386 1 840 257 8 42 chr21 28392006 28392247 -16515323 - MER97a DNA MER1_type? -661 233 1 245 355 13 40 chr21 28393005 28393157 -16514413 + MIR SINE MIR 47 194 -68 323 246 0 0 chr21 28393669 28393730 -16513840 - MER5B DNA MER1_type -117 61 1 1697 187 7 0 chr21 28398732 28399005 -16508565 + AluJb SINE Alu 1 275 -37 182 335 45 26 chr21 28399147 28399302 -16508268 + L2 LINE L2 1544 1701 -1613 1982 149 6 0 chr21 28399310 28399625 -16507945 + L1PA16 LINE L1 5779 6095 -71 516 139 0 0 chr21 28399643 28399722 -16507848 - AluSc SINE Alu -87 222 144 194 62 31 0 chr21 28399763 28399795 -16507775 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 342 298 127 33 chr21 28400043 28400224 -16507346 + MIR SINE MIR 17 214 -48 1120 245 84 19 chr21 28400562 28400921 -16506649 + LTR16A LTR ERVL 62 443 -7 222 460 9 18 chr21 28400976 28401204 -16506366 + L2 LINE L2 2579 2804 -510 576 317 107 73 chr21 28401260 28401762 -16505808 - L2 LINE L2 -94 3219 2736 2177 126 7 0 chr21 28401762 28402064 -16505506 + AluSg SINE Alu 1 304 -6 576 317 107 73 chr21 28402064 28402521 -16505049 - L2 LINE L2 -577 2736 2241 2104 129 0 0 chr21 28402874 28403187 -16504383 - AluSx SINE Alu 0 313 1 213 39 0 0 chr21 28403323 28403349 -16504221 + (CA)n Simple_repeat Simple_repeat 1 26 0 319 313 73 70 chr21 28403464 28403714 -16503856 + L2 LINE L2 2995 3248 -65 311 64 0 21 chr21 28403714 28403761 -16503809 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 319 313 73 70 chr21 28403761 28403826 -16503744 + L2 LINE L2 3248 3311 -2 210 143 0 0 chr21 28404296 28404331 -16503239 + (T)n Simple_repeat Simple_repeat 1 35 0 615 194 16 16 chr21 28404754 28404883 -16502687 + MER5B DNA MER1_type 1 129 -49 196 279 16 0 chr21 28404914 28404975 -16502595 + MER5B DNA MER1_type 116 177 -1 402 277 40 57 chr21 28404992 28405169 -16502401 + MER5B DNA MER1_type 1 174 -4 21 0 0 0 chr21 28405661 28405682 -16501888 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr21 28406180 28406225 -16501345 + AT_rich Low_complexity Low_complexity 1 45 0 3148 187 56 24 chr21 28406797 28406852 -16500718 - L1MC3 LINE L1 -11 7774 7722 2218 114 0 0 chr21 28406852 28407149 -16500421 - AluSx SINE Alu -15 297 1 3148 187 56 24 chr21 28407149 28407918 -16499652 - L1MC3 LINE L1 -63 7722 6790 1859 153 3 3 chr21 28407918 28408219 -16499351 - AluJb SINE Alu -11 301 1 3148 187 56 24 chr21 28408219 28408405 -16499165 - L1MC3 LINE L1 -995 6790 6612 1137 251 97 33 chr21 28409548 28409910 -16497660 + MLT1D LTR MaLR 3 387 -118 456 317 40 45 chr21 28409920 28410144 -16497426 + L2 LINE L2 3083 3305 -8 25 51 0 0 chr21 28410288 28410327 -16497243 + AT_rich Low_complexity Low_complexity 1 39 0 193 122 24 49 chr21 28410727 28410768 -16496802 - MIR SINE MIR -113 149 110 725 223 40 23 chr21 28410917 28411092 -16496478 + MER20 DNA MER1_type 1 178 -41 339 323 58 58 chr21 28411094 28411320 -16496250 - MIR SINE MIR -8 254 29 406 305 81 17 chr21 28412356 28412530 -16495040 - MIR SINE MIR -73 189 5 1462 272 89 30 chr21 28412660 28412707 -16494863 + MER20B DNA MER1_type 1 44 -739 273 98 0 0 chr21 28412707 28412748 -16494822 + (TG)n Simple_repeat Simple_repeat 2 42 0 1462 272 89 30 chr21 28412748 28413409 -16494161 + MER20B DNA MER1_type 44 751 -32 390 272 56 24 chr21 28413491 28413616 -16493954 - L2 LINE L2 -1 3312 3184 1004 196 67 44 chr21 28413625 28413895 -16493675 + LTR37B LTR ERV1 23 298 -170 234 213 0 25 chr21 28413933 28414013 -16493557 + LTR37B LTR ERV1 391 468 0 23 33 0 0 chr21 28414183 28414213 -16493357 + AT_rich Low_complexity Low_complexity 1 30 0 2137 122 7 3 chr21 28414409 28414703 -16492867 + AluSq SINE Alu 2 296 -17 514 321 101 15 chr21 28415069 28415405 -16492165 + L1MCa LINE L1 485 849 -5270 330 267 78 96 chr21 28415521 28415791 -16491779 + L1MCa LINE L1 990 1254 -4865 271 269 51 51 chr21 28415817 28415992 -16491578 + L1MCa LINE L1 1145 1558 -932 2044 193 82 42 chr21 28416231 28416709 -16490861 + MLT1D LTR MaLR 6 502 -3 750 50 0 0 chr21 28417876 28417975 -16489595 + L1PA8 LINE L1 6072 6170 -2 25 0 0 0 chr21 28419182 28419207 -16488363 + AT_rich Low_complexity Low_complexity 1 25 0 842 141 0 0 chr21 28419545 28419680 -16487890 + L1PA15 LINE L1 6025 6159 -6 303 282 18 49 chr21 28419720 28419883 -16487687 - L1ME4a LINE L1 -199 5922 5765 361 296 17 47 chr21 28420010 28420182 -16487388 - MLT1J LTR MaLR -56 455 289 227 226 16 16 chr21 28420393 28420455 -16487115 - MLT1J LTR MaLR -449 62 1 938 317 21 77 chr21 28420910 28421468 -16486102 + L2 LINE L2 263 789 -2525 354 291 199 14 chr21 28421481 28421622 -16485948 - MER5B DNA MER1_type -11 167 1 967 133 207 11 chr21 28421673 28421861 -16485709 - MER4A LTR ERV1 -1 663 439 890 227 87 84 chr21 28421892 28422262 -16485308 - MLT1D LTR MaLR -8 497 127 565 192 75 0 chr21 28422342 28422462 -16485108 - MLT1D LTR MaLR -371 134 6 2241 313 127 19 chr21 28422468 28423702 -16483868 + L2 LINE L2 1660 3025 -288 2338 202 17 68 chr21 28423794 28424383 -16483187 - MER89 LTR ERV1 0 559 1 190 162 27 0 chr21 28424511 28424548 -16483022 + L2 LINE L2 3262 3299 -14 382 275 22 95 chr21 28425343 28425565 -16482005 - MIR SINE MIR -9 253 48 21 36 0 0 chr21 28425939 28425967 -16481603 + AT_rich Low_complexity Low_complexity 1 28 0 200 186 0 0 chr21 28426024 28426067 -16481503 + L2 LINE L2 3271 3313 0 180 0 0 0 chr21 28426125 28426145 -16481425 + (TG)n Simple_repeat Simple_repeat 1 20 0 253 360 27 9 chr21 28427408 28427519 -16480051 + MIR SINE MIR 28 140 -122 1917 137 99 6 chr21 28428177 28428541 -16479029 + L1MA5 LINE L1 5628 6025 -275 303 28 135 0 chr21 28428543 28428596 -16478974 - L1P LINE L1 -733 5398 5329 * 9453 66 8 9 chr21 28428594 28430106 -16477464 + L1PA7 LINE L1 3494 6147 -7 180 0 0 0 chr21 28430114 28430134 -16477436 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 5769 76 3 0 chr21 28430641 28432604 -16474966 - L1PA7 LINE L1 -11 6143 4105 189 281 31 31 chr21 28432705 28432769 -16474801 - MIR SINE MIR -123 139 76 1545 172 36 42 chr21 28433734 28434042 -16473528 + AluJo SINE Alu 1 306 -6 623 194 0 90 chr21 28434246 28434380 -16473190 - FLAM_C SINE Alu -21 122 1 545 209 54 23 chr21 28434420 28434549 -16473021 + FLAM_A SINE Alu 1 133 0 224 100 25 0 chr21 28434722 28434762 -16472808 + (GA)n Simple_repeat Simple_repeat 1 41 0 241 314 23 0 chr21 28434877 28434963 -16472607 - L1MC/D LINE L1 -2017 5791 5704 3001 143 20 35 chr21 28435078 28435169 -16472401 - MER67C LTR ERV1 -2 708 617 2197 110 0 13 chr21 28435169 28435477 -16472093 - AluSx SINE Alu -8 304 1 3001 143 20 35 chr21 28435477 28435929 -16471641 - MER67C LTR ERV1 -93 617 173 2242 109 3 0 chr21 28435935 28436237 -16471333 - AluSx SINE Alu -9 303 1 210 37 0 0 chr21 28436308 28436335 -16471235 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1514 20 0 41 chr21 28436340 28436535 -16471035 - L1PA4 LINE L1 -16 6139 5953 359 259 116 9 chr21 28436574 28436686 -16470884 + MLT1H1 LTR MaLR 8 131 -424 406 242 50 0 chr21 28436871 28436970 -16470600 + MLT1H1 LTR MaLR 437 540 -15 2444 164 36 51 chr21 28436981 28437506 -16470064 - LTR26B LTR ERV1 -3 528 12 1301 192 50 4 chr21 28438327 28438588 -16468982 + AluJo SINE Alu 1 273 -39 984 113 11 11 chr21 28438595 28438772 -16468798 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 249 33 0 0 chr21 28440357 28440387 -16467183 + (TA)n Simple_repeat Simple_repeat 1 30 0 312 229 10 83 chr21 28440420 28440516 -16467054 - L1MC4 LINE L1 -1340 6702 6614 267 31 0 0 chr21 28440550 28440582 -16466988 + (TA)n Simple_repeat Simple_repeat 1 32 0 249 33 0 0 chr21 28440605 28440635 -16466935 + (TA)n Simple_repeat Simple_repeat 1 30 0 288 0 0 0 chr21 28440703 28440735 -16466835 + (TA)n Simple_repeat Simple_repeat 1 32 0 816 288 17 4 chr21 28441192 28441425 -16466145 - MIR SINE MIR -26 236 1 25 0 0 0 chr21 28441571 28441596 -16465974 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr21 28441972 28441998 -16465572 + AT_rich Low_complexity Low_complexity 1 26 0 221 388 27 11 chr21 28442779 28442967 -16464603 - L2 LINE L2 -528 2786 2596 1128 134 0 17 chr21 28443299 28443471 -16464099 + AluSg/x SINE Alu 137 305 -7 2574 52 3 0 chr21 28447760 28448068 -16459502 + AluY SINE Alu 1 309 -2 2254 128 0 0 chr21 28449825 28450137 -16457433 - AluSx SINE Alu 0 312 1 1203 237 45 48 chr21 28450218 28450593 -16456977 - MLT1A2 LTR MaLR 0 374 1 214 345 95 60 chr21 28451106 28451274 -16456296 - MIR SINE MIR -69 193 20 22 35 0 0 chr21 28451915 28451944 -16455626 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr21 28452295 28452323 -16455247 + AT_rich Low_complexity Low_complexity 1 28 0 328 326 45 34 chr21 28452410 28452588 -16454982 - MIR SINE MIR -73 189 10 231 36 0 0 chr21 28452878 28452906 -16454664 + (CA)n Simple_repeat Simple_repeat 1 28 0 201 333 32 0 chr21 28453402 28453465 -16454105 - L2 LINE L2 -3 3269 3205 298 319 11 43 chr21 28454147 28454241 -16453329 + L2 LINE L2 3160 3250 -22 395 305 32 13 chr21 28454348 28454502 -16453068 + L2 LINE L2 3156 3312 -1 21 0 0 0 chr21 28455879 28455900 -16451670 + AT_rich Low_complexity Low_complexity 1 21 0 268 252 27 116 chr21 28456439 28456510 -16451060 - L2 LINE L2 -1 3271 3218 1976 90 9 87 chr21 28456510 28456832 -16450738 + AluSx SINE Alu 1 297 -15 268 252 27 116 chr21 28456832 28456907 -16450663 - L2 LINE L2 -54 3218 3138 468 319 185 4 chr21 28456981 28457257 -16450313 - MER102b DNA MER1_type -5 336 11 1746 194 0 0 chr21 28458654 28458948 -16448622 + AluJb SINE Alu 5 298 -14 252 0 0 0 chr21 28458979 28459007 -16448563 + (A)n Simple_repeat Simple_repeat 1 28 0 333 113 12 25 chr21 28459511 28459591 -16447979 + (TA)n Simple_repeat Simple_repeat 2 80 0 1882 155 31 0 chr21 28461548 28461838 -16445732 + AluSx SINE Alu 1 299 -13 2757 159 24 5 chr21 28462000 28463315 -16444255 + L1PA16 LINE L1 4710 6166 0 537 283 54 24 chr21 28464757 28464962 -16442608 - MIR SINE MIR -3 259 49 307 327 31 57 chr21 28465145 28465304 -16442266 - MIR SINE MIR -67 195 41 2295 117 13 89 chr21 28466244 28466408 -16441162 - LTR23 LTR ERV1 0 437 262 1783 163 21 0 chr21 28466408 28466691 -16440879 - AluSx SINE Alu -23 289 1 2295 117 13 89 chr21 28466691 28466733 -16440837 - LTR23 LTR ERV1 -175 262 218 2314 101 0 3 chr21 28466733 28467041 -16440529 - AluSc SINE Alu -2 307 1 2295 117 13 89 chr21 28467041 28467304 -16440266 - LTR23 LTR ERV1 -219 218 3 2094 68 0 84 chr21 28467691 28468067 -16439503 - AluY SINE Alu 0 350 1 21 57 0 0 chr21 28470115 28470150 -16437420 + AT_rich Low_complexity Low_complexity 1 35 0 1781 139 167 45 chr21 28470719 28470854 -16436716 + LTR47A LTR ERVL 1 118 -334 721 224 92 0 chr21 28470854 28471006 -16436564 - FRAM SINE Alu 0 166 1 1781 139 167 45 chr21 28471006 28471272 -16436298 + LTR47A LTR ERVL 118 451 -1 261 0 0 0 chr21 28471388 28471417 -16436153 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2017 90 22 7 chr21 28471422 28471700 -16435870 - AluSx SINE Alu -30 282 1 270 319 67 8 chr21 28471797 28471916 -16435654 - MIR SINE MIR -13 249 124 410 105 0 0 chr21 28473482 28473539 -16434031 - Alu SINE Alu -242 67 11 1660 81 14 0 chr21 28473540 28473751 -16433819 + AluSg/x SINE Alu 76 289 -23 896 206 237 72 chr21 28473884 28474301 -16433269 + LTR21A LTR ERV1 1 486 -19 311 335 24 57 chr21 28474907 28475119 -16432451 + L1ME3A LINE L1 7 211 -5859 455 207 25 83 chr21 28475872 28475993 -16431577 - FLAM_A SINE Alu -23 119 6 584 192 0 0 chr21 28476008 28476107 -16431463 - AluJb SINE Alu -15 297 199 1492 295 100 35 chr21 28476109 28476691 -16430879 + L1ME3A LINE L1 3657 4200 -1880 1532 193 10 29 chr21 28476691 28476997 -16430573 + AluJo SINE Alu 7 306 -6 1492 295 100 35 chr21 28476997 28477833 -16429737 + L1ME3A LINE L1 4200 5167 -913 22 35 0 0 chr21 28477835 28477864 -16429706 + AT_rich Low_complexity Low_complexity 1 29 0 360 254 30 13 chr21 28477864 28478035 -16429535 + L1ME3A LINE L1 5224 5400 -696 256 271 0 7 chr21 28478035 28478111 -16429459 + AluSc SINE Alu 126 188 -111 28 0 0 0 chr21 28478122 28478150 -16429420 + AT_rich Low_complexity Low_complexity 1 28 0 1520 247 112 36 chr21 28478150 28478460 -16429110 + L1ME3A LINE L1 5408 5693 -411 501 114 13 0 chr21 28478460 28478539 -16429031 - MADE1 DNA Mariner 0 80 1 1520 247 112 36 chr21 28478539 28478844 -16428726 + L1ME3A LINE L1 5693 6070 -34 719 176 44 4 chr21 28479024 28479197 -16428373 + MSTA LTR MaLR 2 193 -264 345 128 0 0 chr21 28479218 28479265 -16428305 + MSTA LTR MaLR 381 427 -1 2245 142 28 17 chr21 28480783 28481143 -16426427 + THE1B LTR MaLR 1 364 0 2178 145 5 38 chr21 28481563 28481935 -16425635 - MLT2D LTR ERVL -54 360 1 273 275 107 15 chr21 28482352 28482483 -16425087 - L1P1 LINE L1 -692 5463 5321 311 260 26 0 chr21 28482759 28482836 -16424734 - L1MC4 LINE L1 -1350 6692 6614 261 219 0 0 chr21 28482842 28482906 -16424664 - L1MC4 LINE L1 -1339 6703 6640 280 320 0 0 chr21 28483032 28483132 -16424438 + (TA)n Simple_repeat Simple_repeat 2 101 0 5959 123 13 53 chr21 28483169 28483619 -16423951 + L1MA3 LINE L1 5233 5699 -606 300 130 0 0 chr21 28483619 28483665 -16423905 + MADE1 DNA Mariner 35 80 0 5959 123 13 53 chr21 28483665 28484131 -16423439 + L1MA3 LINE L1 5699 6149 -156 2345 84 0 3 chr21 28484131 28484430 -16423140 + AluSq SINE Alu 1 298 -15 5959 123 13 53 chr21 28484430 28484547 -16423023 + L1MA3 LINE L1 6149 6269 -36 461 331 27 77 chr21 28484702 28485116 -16422454 + MLT1J LTR MaLR 119 511 0 2583 199 28 4 chr21 28485864 28486372 -16421198 - MLT2B1 LTR ERVL 0 520 1 299 230 0 36 chr21 28486624 28486763 -16420807 + CT-rich Low_complexity Low_complexity 4 137 0 1843 151 3 20 chr21 28486992 28487284 -16420286 - AluJo SINE Alu -25 287 1 525 139 0 0 chr21 28487804 28487883 -16419687 - AluJb SINE Alu -25 287 209 252 184 0 0 chr21 28488730 28488779 -16418791 + (TG)n Simple_repeat Simple_repeat 2 50 0 626 222 8 0 chr21 28488793 28488919 -16418651 + MER20 DNA MER1_type 93 219 0 340 233 63 69 chr21 28488979 28489138 -16418432 + MIR SINE MIR 104 261 -1 3684 128 14 0 chr21 28490816 28491386 -16416184 + L1PA14 LINE L1 5571 6148 -13 2211 114 3 0 chr21 28492457 28492754 -16414816 - AluSq SINE Alu -15 298 1 1939 141 7 3 chr21 28492860 28493157 -16414413 + AluSx SINE Alu 1 298 -14 1131 176 16 98 chr21 28494702 28494776 -16412794 + MER46A DNA MER2_type 2 80 -2651 614 102 0 0 chr21 28494776 28494864 -16412706 - L1PA10 LINE L1 -11 6157 6070 1131 176 16 98 chr21 28494864 28495045 -16412525 + MER46A DNA MER2_type 80 236 0 345 276 85 32 chr21 28495063 28495309 -16412261 - MIR SINE MIR -2 260 2 1246 122 109 0 chr21 28495429 28495658 -16411912 + L1MA2 LINE L1 6051 6304 0 29 0 0 0 chr21 28495658 28495687 -16411883 + AT_rich Low_complexity Low_complexity 1 29 0 1871 171 36 57 chr21 28495793 28496231 -16411339 + LTR3 LTR ERVK 1 429 0 478 97 0 0 chr21 28496232 28496294 -16411276 + LTR3b LTR ERVK 439 500 0 260 364 75 16 chr21 28496349 28496536 -16411034 - MIR3 SINE MIR -8 200 3 373 330 10 0 chr21 28496950 28497053 -16410517 - MIR SINE MIR -65 143 40 217 403 50 8 chr21 28497092 28497211 -16410359 - L2 LINE L2 -4 3268 3145 1803 178 22 22 chr21 28497492 28497857 -16409713 - MLT1A1 LTR MaLR 0 365 1 2333 92 0 3 chr21 28498212 28498515 -16409055 - AluSq SINE Alu -11 302 1 350 212 436 17 chr21 28498894 28499135 -16408435 + LTR50 LTR ERVL 122 463 -332 243 249 265 28 chr21 28499182 28499363 -16408207 + LTR33A LTR ERVL 292 515 -8 2235 107 3 16 chr21 28500897 28501214 -16406356 + AluSp SINE Alu 1 313 0 287 267 89 10 chr21 28501232 28501333 -16406237 - MIR3 SINE MIR 0 208 100 1296 196 19 70 chr21 28502129 28502445 -16405125 - AluJo SINE Alu -12 300 1 262 271 0 42 chr21 28503373 28503469 -16404101 + CT-rich Low_complexity Low_complexity 4 95 0 1236 210 75 4 chr21 28503810 28503924 -16403646 + AluJo SINE Alu 1 105 -207 213 94 0 0 chr21 28503924 28503956 -16403614 + (TAA)n Simple_repeat Simple_repeat 3 34 0 1236 210 75 4 chr21 28503956 28504122 -16403448 + AluJo SINE Alu 105 301 -11 210 395 126 8 chr21 28505094 28505213 -16402357 + MIR3 SINE MIR 47 179 -29 198 200 114 29 chr21 28505246 28505316 -16402254 - MIR SINE MIR -12 250 175 2001 129 14 0 chr21 28506611 28506906 -16400664 + AluSx SINE Alu 1 299 -13 4267 78 2 0 chr21 28507904 28508468 -16399102 + L1PA7 LINE L1 5589 6153 -1 276 354 48 0 chr21 28508706 28508853 -16398717 - L1MC/D LINE L1 -1961 5847 5694 424 280 189 12 chr21 28508863 28509173 -16398397 - L1MC/D LINE L1 -743 5403 5261 1838 88 0 0 chr21 28509173 28509401 -16398169 - AluSc SINE Alu -2 307 80 424 280 189 12 chr21 28509401 28509490 -16398080 - L1MC/D LINE L1 -885 5261 5189 261 260 49 57 chr21 28509518 28509641 -16397929 - L1MC2 LINE L1 -11 6333 6212 395 370 89 12 chr21 28510218 28510464 -16397106 + L3 LINE CR1 1203 1467 -110 2146 109 7 13 chr21 28511014 28511316 -16396254 - AluSq SINE Alu -13 300 1 210 159 0 23 chr21 28512701 28512745 -16394825 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 25 0 0 0 chr21 28514196 28514221 -16393349 + AT_rich Low_complexity Low_complexity 1 25 0 573 185 106 20 chr21 28515443 28515594 -16391976 + MLT1D LTR MaLR 1 164 -341 797 277 12 25 chr21 28515625 28515867 -16391703 + MLT1D LTR MaLR 267 505 0 372 291 70 17 chr21 28516746 28516918 -16390652 + MIR SINE MIR 72 252 -10 334 331 132 0 chr21 28517215 28517351 -16390219 + MIR SINE MIR 40 193 -69 22 0 0 0 chr21 28517393 28517415 -16390155 + AT_rich Low_complexity Low_complexity 1 22 0 623 162 20 7 chr21 28517634 28517782 -16389788 + GA-rich Low_complexity Low_complexity 3 152 0 284 241 196 7 chr21 28518158 28518310 -16389260 + MIR SINE MIR 75 254 -8 432 329 87 10 chr21 28518631 28518838 -16388732 + MLT1I LTR MaLR 183 405 -4 231 337 0 21 chr21 28521781 28521876 -16385694 - L3b LINE CR1 -222 1361 1269 2060 94 4 0 chr21 28522401 28522667 -16384903 + AluSp SINE Alu 35 301 -12 196 314 108 0 chr21 28523600 28523702 -16383868 + L2 LINE L2 3153 3265 -7 431 335 43 61 chr21 28523752 28524080 -16383490 + L2 LINE L2 2285 2606 -708 1414 197 85 33 chr21 28524113 28524323 -16383247 - L1MCa LINE L1 -4509 1917 1719 864 121 0 0 chr21 28524323 28524455 -16383115 - L1PB1 LINE L1 -4 6147 6016 1414 197 85 33 chr21 28524455 28524823 -16382747 - L1MCa LINE L1 -4707 1719 1220 1945 125 48 0 chr21 28524887 28525176 -16382394 - AluSq SINE Alu -10 303 1 324 333 75 13 chr21 28525727 28525886 -16381684 + MIR SINE MIR 49 217 -45 207 162 0 0 chr21 28526053 28526090 -16381480 + (TATG)n Simple_repeat Simple_repeat 4 40 0 193 223 214 10 chr21 28526131 28526234 -16381336 + MIR SINE MIR 112 235 -27 335 256 16 62 chr21 28526584 28526713 -16380857 + MLT1J1 LTR MaLR 1 123 -323 495 73 0 0 chr21 28527207 28527275 -16380295 + (TG)n Simple_repeat Simple_repeat 1 68 0 1792 219 46 67 chr21 28529521 28530086 -16377484 - MLT2B3 LTR ERVL -1 553 1 2092 259 64 11 chr21 28531633 28532383 -16375187 - L1MEc LINE L1 -5230 1166 377 358 241 43 17 chr21 28532429 28532545 -16375025 - L1MEc LINE L1 -6242 154 36 3855 223 50 7 chr21 28533323 28534266 -16373304 + L1MC3 LINE L1 6796 7778 -7 238 357 96 15 chr21 28534390 28534589 -16372981 - MIR SINE MIR 0 262 48 2507 57 0 3 chr21 28534612 28534913 -16372657 - AluY SINE Alu -11 300 1 1336 160 3 149 chr21 28536035 28536397 -16371173 + AluJo SINE Alu 1 309 -3 2195 133 0 0 chr21 28538031 28538339 -16369231 + AluSq SINE Alu 1 308 -5 308 311 117 36 chr21 28538570 28538792 -16368778 - L1ME LINE L1 -563 5558 5319 247 288 17 0 chr21 28539477 28539536 -16368034 + L2 LINE L2 3250 3309 -4 22 0 0 0 chr21 28540463 28540485 -16367085 + AT_rich Low_complexity Low_complexity 1 22 0 787 284 99 40 chr21 28542481 28542854 -16364716 + MSTD LTR MaLR 1 395 -1 210 347 69 0 chr21 28543529 28543601 -16363969 + L2 LINE L2 3231 3307 -6 3573 249 38 37 chr21 28543824 28545548 -16362022 - L1MCb LINE L1 -4835 1729 7 21 36 0 0 chr21 28546119 28546147 -16361423 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 28546408 28546436 -16361134 + AT_rich Low_complexity Low_complexity 1 28 0 1232 284 64 49 chr21 28546818 28547971 -16359599 + L1ME3A LINE L1 4782 5963 -207 205 211 184 40 chr21 28548559 28548635 -16358935 + L2 LINE L2 3185 3271 -1 284 308 120 34 chr21 28550413 28550647 -16356923 - MARNA DNA Mariner -22 564 311 213 333 80 33 chr21 28552021 28552171 -16355399 - MIR SINE MIR -6 256 100 251 210 31 148 chr21 28552282 28552444 -16355126 + MIR SINE MIR 78 220 -42 243 0 0 0 chr21 28552834 28552861 -16354709 + (T)n Simple_repeat Simple_repeat 1 27 0 340 367 58 7 chr21 28552985 28553124 -16354446 - L2 LINE L2 0 3272 3127 3006 190 20 29 chr21 28553800 28554463 -16353107 - L1 LINE L1 -1867 5698 5042 2843 234 93 32 chr21 28554519 28555805 -16351765 - L1 LINE L1 -2983 4582 3160 2488 206 19 27 chr21 28555805 28556324 -16351246 - MLT2B2 LTR ERVL 0 515 1 2843 234 93 32 chr21 28556324 28556745 -16350825 - L1 LINE L1 -4405 3160 2766 1493 286 33 40 chr21 28556854 28557403 -16350167 + HERVL40 LTR ERVL 940 1484 -4046 1684 213 15 0 chr21 28557403 28557741 -16349829 + MER2 DNA MER2_type 1 343 -1 325 242 42 32 chr21 28557854 28557949 -16349621 + HERVL40 LTR ERVL 2553 2648 -2882 1674 256 51 7 chr21 28558111 28558545 -16349025 + LTR40b LTR ERVL 5 457 -5 304 231 43 17 chr21 28559086 28559203 -16348367 + (TATATG)n Simple_repeat Simple_repeat 3 122 0 24 0 0 0 chr21 28560015 28560039 -16347531 + AT_rich Low_complexity Low_complexity 1 24 0 332 335 81 23 chr21 28560234 28560407 -16347163 + MIR3 SINE MIR 23 205 -3 22 0 0 0 chr21 28560996 28561018 -16346552 + AT_rich Low_complexity Low_complexity 1 22 0 204 246 98 0 chr21 28562494 28562555 -16345015 + MIR SINE MIR 41 107 -155 291 289 111 15 chr21 28562692 28562827 -16344743 + MIR SINE MIR 112 259 -3 487 307 19 47 chr21 28563221 28563380 -16344190 - MIR SINE MIR 0 262 109 1986 164 0 0 chr21 28563380 28563692 -16343878 + AluSx SINE Alu 1 312 0 487 307 19 47 chr21 28563692 28563747 -16343823 - MIR SINE MIR -153 109 54 240 158 18 18 chr21 28564588 28564628 -16342942 - MLT2B1 LTR ERVL 0 520 478 525 14 40 0 chr21 28564628 28564702 -16342868 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 240 158 18 18 chr21 28564702 28564718 -16342852 - MLT2B1 LTR ERVL -41 479 464 420 143 0 0 chr21 28564728 28564798 -16342772 + (TG)n Simple_repeat Simple_repeat 1 70 0 1823 211 93 2 chr21 28564815 28565233 -16342337 - MLT2B1 LTR ERVL -60 460 5 563 251 85 89 chr21 28565512 28565747 -16341823 - MIR SINE MIR -27 235 2 2440 71 3 0 chr21 28565770 28566067 -16341503 + AluY SINE Alu 1 298 -13 2292 103 7 3 chr21 28569298 28569641 -16337929 - AluSq SINE Alu 0 344 1 349 383 40 52 chr21 28569642 28570086 -16337484 + L2 LINE L2 2825 3263 -9 2257 112 0 3 chr21 28570341 28570645 -16336925 - AluSx SINE Alu -9 303 1 1731 178 17 7 chr21 28571877 28572170 -16335400 - AluJo SINE Alu -14 298 3 424 297 159 0 chr21 28572400 28572538 -16335032 + MIR3 SINE MIR 42 201 -7 24 32 0 0 chr21 28573724 28573755 -16333815 + AT_rich Low_complexity Low_complexity 1 31 0 1703 161 7 4 chr21 28573760 28574040 -16333530 + Tigger1 DNA MER2_type 1 281 -2137 3274 168 49 43 chr21 28574040 28574860 -16332710 - LTR1 LTR ERV1 0 785 1 * 7044 110 15 30 chr21 28574860 28575953 -16331617 + Tigger1 DNA MER2_type 282 1358 -1060 314 245 184 100 chr21 28576076 28576238 -16331332 - MLT1L LTR MaLR -23 592 445 1962 119 0 69 chr21 28576238 28576556 -16331014 + AluSx SINE Alu 4 299 -13 314 245 184 100 chr21 28576556 28576630 -16330940 - MLT1L LTR MaLR -170 445 379 2247 74 0 11 chr21 28576630 28576915 -16330655 + AluY SINE Alu 27 308 -3 314 245 184 100 chr21 28576915 28577046 -16330524 - MLT1L LTR MaLR -236 379 166 441 36 0 0 chr21 28578997 28579052 -16328518 + (TC)n Simple_repeat Simple_repeat 2 56 0 238 385 109 5 chr21 28579228 28579449 -16328121 - MIR SINE MIR -14 248 5 441 276 114 55 chr21 28580328 28580748 -16326822 + MER65A LTR ERV1 1 445 0 28 61 0 0 chr21 28581697 28581746 -16325824 + AT_rich Low_complexity Low_complexity 1 49 0 351 0 0 0 chr21 28581856 28581895 -16325675 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1263 188 47 32 chr21 28581898 28582175 -16325395 - AluJo SINE Alu -31 281 1 192 40 0 0 chr21 28582285 28582310 -16325260 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 186 357 29 0 chr21 28582513 28582583 -16324987 - MIR SINE MIR -118 90 19 473 127 0 0 chr21 28582588 28582659 -16324911 - MADE1 DNA Mariner -1 79 9 516 352 100 41 chr21 28582932 28583150 -16324420 + L2 LINE L2 1605 1809 -1505 2145 134 13 46 chr21 28583150 28583538 -16324032 + THE1C LTR MaLR 1 375 0 516 352 100 41 chr21 28583538 28584131 -16323439 + L2 LINE L2 1809 2464 -850 902 268 28 0 chr21 28584221 28584434 -16323136 - MER20 DNA MER1_type 0 219 1 765 101 34 28 chr21 28584558 28584736 -16322834 + CT-rich Low_complexity Low_complexity 2 180 0 326 368 101 25 chr21 28584763 28585081 -16322489 + L2 LINE L2 2636 2977 -337 2073 107 3 3 chr21 28587684 28587973 -16319597 + AluSx SINE Alu 5 293 -19 22 0 0 0 chr21 28588264 28588286 -16319284 + AT_rich Low_complexity Low_complexity 1 22 0 421 333 40 25 chr21 28588731 28588932 -16318638 - MIR SINE MIR 0 262 59 602 161 0 0 chr21 28589597 28589709 -16317861 + L1PB4 LINE L1 6045 6156 0 21 82 0 0 chr21 28590463 28590512 -16317058 + AT_rich Low_complexity Low_complexity 1 49 0 5240 163 27 3 chr21 28591928 28593697 -16313873 + L1PB4 LINE L1 4342 6153 -3 766 226 57 53 chr21 28593889 28594154 -16313416 - L1MD2 LINE L1 -31 6328 6063 913 153 27 7 chr21 28594172 28594322 -16313248 - FRAM SINE Alu -12 164 12 27 62 0 0 chr21 28594381 28594429 -16313141 + AT_rich Low_complexity Low_complexity 1 48 0 2047 162 29 62 chr21 28594609 28595090 -16312480 + L1MA9 LINE L1 5848 6312 0 987 249 45 9 chr21 28595340 28595670 -16311900 + LTR37A LTR ERV1 79 420 -6 245 320 10 0 chr21 28596747 28596844 -16310726 + GA-rich Low_complexity Low_complexity 5 102 0 2217 111 0 3 chr21 28597416 28597714 -16309856 - AluSg SINE Alu -13 297 1 279 0 0 0 chr21 28597725 28597756 -16309814 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 13428 40 1 1 chr21 28597759 28600157 -16307413 - L1PA5 LINE L1 -13 6141 3744 196 320 0 0 chr21 28600782 28600832 -16306738 - L3 LINE CR1 -30 1547 1498 215 31 31 0 chr21 28601027 28601059 -16306511 + (CA)n Simple_repeat Simple_repeat 1 33 0 230 399 88 0 chr21 28603244 28603392 -16304178 - MIR3 SINE MIR -17 191 31 553 229 13 0 chr21 28604464 28604692 -16302878 + CT-rich Low_complexity Low_complexity 1 231 0 2546 64 0 6 chr21 28604941 28605254 -16302316 - AluY SINE Alu 0 311 1 2173 100 0 0 chr21 28605669 28605968 -16301602 + AluSg SINE Alu 1 299 0 1939 139 12 9 chr21 28606157 28606494 -16301076 - L1MA4 LINE L1 -8 6292 5955 32 0 0 0 chr21 28606697 28606729 -16300841 + AT_rich Low_complexity Low_complexity 1 32 0 781 253 36 44 chr21 28606796 28607021 -16300549 - MIR SINE MIR -34 228 6 365 277 59 0 chr21 28607236 28607337 -16300233 + MIR SINE MIR 7 113 -149 1280 204 0 43 chr21 28607554 28607833 -16299737 - AluJo SINE Alu -6 306 40 2877 234 66 22 chr21 28607833 28608236 -16299334 - L1ME1 LINE L1 -57 6109 5725 1698 168 51 38 chr21 28608236 28608606 -16298964 + THE1C LTR MaLR 1 375 0 9504 133 17 35 chr21 28608609 28610215 -16297355 + THE1C-int LTR MaLR 4 1580 0 1793 158 55 33 chr21 28610215 28610582 -16296988 + THE1C LTR MaLR 1 375 0 2877 234 66 22 chr21 28610582 28611110 -16296460 - L1ME1 LINE L1 -441 5725 5136 2927 67 3 0 chr21 28611130 28611502 -16296068 + THE1-int LTR MaLR 1208 1580 0 1800 174 36 28 chr21 28611502 28611863 -16295707 + THE1B LTR MaLR 1 364 0 378 288 7 7 chr21 28611863 28612009 -16295561 - L1ME1 LINE L1 -2611 3535 3387 361 85 0 0 chr21 28613330 28613377 -16294193 - MLT2C2 LTR ERVL -1 413 367 224 135 0 19 chr21 28613377 28613429 -16294141 + (TG)n Simple_repeat Simple_repeat 1 51 0 2051 169 34 36 chr21 28613434 28613847 -16293723 - MLT2C2 LTR ERVL -48 416 5 195 241 161 62 chr21 28614729 28614841 -16292729 - MIR SINE MIR -12 250 128 21 0 0 0 chr21 28615085 28615106 -16292464 + AT_rich Low_complexity Low_complexity 1 21 0 271 344 104 6 chr21 28615684 28615847 -16291723 - MIR SINE MIR -58 204 26 245 227 45 0 chr21 28616620 28616686 -16290884 + GA-rich Low_complexity Low_complexity 2 70 0 1272 207 115 46 chr21 28617219 28617653 -16289917 - MLT1C LTR MaLR 0 467 4 192 97 0 0 chr21 28618784 28618815 -16288755 + (A)n Simple_repeat Simple_repeat 1 31 0 219 163 61 41 chr21 28619095 28619144 -16288426 - MER5A DNA MER1_type 0 189 140 2226 116 3 0 chr21 28620047 28620348 -16287222 + AluSq SINE Alu 6 307 -6 3792 163 29 29 chr21 28620753 28621471 -16286099 + LTR1 LTR ERV1 68 785 0 252 211 0 0 chr21 28621781 28621833 -16285737 - L2 LINE L2 -1 3312 3261 199 193 105 18 chr21 28621799 28621856 -16285714 - MIR SINE MIR -13 249 188 * 206 241 0 0 chr21 28622427 28622481 -16285089 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 701 293 118 50 chr21 28622679 28623120 -16284450 - Charlie8 DNA MER1_type -1872 545 75 269 236 97 0 chr21 28624101 28624173 -16283397 + MER69 DNA AcHobo 1 79 -2447 2538 68 0 0 chr21 28624336 28624647 -16282923 - AluY SINE Alu 0 311 1 688 232 153 30 chr21 28624901 28625267 -16282303 + MER69 DNA AcHobo 2115 2525 -1 231 224 17 0 chr21 28625561 28625619 -16281951 + T-rich Low_complexity Low_complexity 3 61 0 2302 96 3 6 chr21 28628200 28628512 -16279058 - AluSx SINE Alu -1 311 1 252 284 0 0 chr21 28629043 28629138 -16278432 + (TA)n Simple_repeat Simple_repeat 1 95 0 331 268 60 25 chr21 28629225 28629460 -16278110 + L1MEd LINE L1 847 1089 -5116 28 29 0 0 chr21 28629486 28629521 -16278049 + AT_rich Low_complexity Low_complexity 1 35 0 288 264 45 19 chr21 28629704 28629859 -16277711 + L1MEd LINE L1 1310 1468 -4928 25 31 0 0 chr21 28631056 28631088 -16276482 + AT_rich Low_complexity Low_complexity 1 32 0 221 260 0 0 chr21 28631373 28631432 -16276138 + (TATG)n Simple_repeat Simple_repeat 1 59 0 464 343 85 42 chr21 28631480 28631961 -16275609 + L1MEc LINE L1 802 1303 -5093 409 285 41 26 chr21 28632052 28632319 -16275251 + L1MEc LINE L1 1372 1642 -4754 23 68 0 0 chr21 28633029 28633073 -16274497 + AT_rich Low_complexity Low_complexity 1 44 0 563 249 62 44 chr21 28633127 28633513 -16274057 - L1M4 LINE L1 -2919 3227 2835 2156 126 3 0 chr21 28634115 28634425 -16273145 - AluSq SINE Alu -2 311 1 1006 166 12 0 chr21 28635088 28635251 -16272319 - AluJ SINE Alu -10 302 138 2239 133 30 25 chr21 28635251 28635613 -16271957 + THE1B LTR MaLR 1 364 0 203 0 0 36 chr21 28635633 28635661 -16271909 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 873 116 8 0 chr21 28635662 28635783 -16271787 - AluJ SINE Alu -178 134 13 23 0 0 0 chr21 28637172 28637195 -16270375 + AT_rich Low_complexity Low_complexity 1 23 0 203 355 27 45 chr21 28637402 28637512 -16270058 - L2 LINE L2 -215 3057 2950 180 0 0 0 chr21 28638260 28638280 -16269290 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 23 68 0 0 chr21 28638404 28638448 -16269122 + AT_rich Low_complexity Low_complexity 1 44 0 321 246 138 29 chr21 28638521 28638659 -16268911 + L1ME2 LINE L1 4564 4716 -1430 430 268 54 12 chr21 28638664 28638832 -16268738 + L1ME2 LINE L1 4759 4933 -1213 10742 212 45 27 chr21 28638834 28640821 -16266749 + L1PA16 LINE L1 1113 3063 -3806 393 128 27 32 chr21 28640821 28640915 -16266655 + AluS SINE Alu 1 57 -251 10742 212 45 27 chr21 28640915 28644040 -16263530 + L1PA16 LINE L1 3063 6383 -486 186 43 0 0 chr21 28644040 28644063 -16263507 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10742 212 45 27 chr21 28644063 28644135 -16263435 + L1PA16 LINE L1 6383 6452 -417 1057 152 0 0 chr21 28644149 28644314 -16263256 + MER41A LTR ERV1 390 554 0 4071 128 20 25 chr21 28644407 28645058 -16262512 + MER41A-int LTR ERV1 1 648 -5298 * 13470 128 22 19 chr21 28645048 28645460 -16262110 + MER41A-int LTR ERV1 1084 1493 -4453 2263 103 0 0 chr21 28645460 28645751 -16261819 - AluY SINE Alu -20 291 1 13470 128 22 19 chr21 28645751 28648856 -16258714 + MER41A-int LTR ERV1 1493 5946 0 3856 102 11 0 chr21 28648857 28649394 -16258176 + MER41A LTR ERV1 4 546 -8 2235 166 15 5 chr21 28649394 28649803 -16257767 + L1PA16 LINE L1 6446 6858 -11 2073 251 66 23 chr21 28649927 28650701 -16256869 + L1ME2 LINE L1 5338 6144 -20 22 0 0 0 chr21 28650709 28650731 -16256839 + AT_rich Low_complexity Low_complexity 1 22 0 228 356 55 49 chr21 28650753 28650916 -16256654 + L2 LINE L2 2727 2890 -424 2785 0 0 3 chr21 28650943 28651245 -16256325 - AluY SINE Alu -10 301 1 231 359 22 11 chr21 28651286 28651378 -16256192 + L2 LINE L2 2986 3078 -194 21 36 0 0 chr21 28651524 28651552 -16256018 + AT_rich Low_complexity Low_complexity 1 28 0 925 251 80 47 chr21 28652431 28652730 -16254840 + MLT1D LTR MaLR 3 311 -194 2884 140 100 8 chr21 28652736 28653214 -16254356 - MER1A DNA MER1_type -6 523 2 972 179 15 30 chr21 28653215 28653416 -16254154 + MLT1D LTR MaLR 304 501 -4 231 261 0 0 chr21 28653792 28653838 -16253732 + polypurine Low_complexity Low_complexity 1 46 0 286 355 21 7 chr21 28653917 28654058 -16253512 + MIR3 SINE MIR 53 195 -13 21 0 0 0 chr21 28656342 28656363 -16251207 + AT_rich Low_complexity Low_complexity 1 21 0 356 386 51 0 chr21 28656887 28657063 -16250507 + LTR16B LTR ERVL 1 185 -279 2117 138 135 0 chr21 28657282 28657659 -16249911 + MSTA LTR MaLR 1 428 0 371 258 3 18 chr21 28657913 28658038 -16249532 - L1MEc LINE L1 -5049 1558 1234 28 0 0 0 chr21 28658967 28658995 -16248575 + AT_rich Low_complexity Low_complexity 1 28 0 227 188 0 31 chr21 28659239 28659303 -16248267 + GA-rich Low_complexity Low_complexity 3 64 0 24 0 0 0 chr21 28661183 28661207 -16246363 + AT_rich Low_complexity Low_complexity 1 24 0 381 307 50 43 chr21 28661837 28662114 -16245456 - LTR16C LTR ERVL -17 474 196 799 201 18 18 chr21 28664558 28664727 -16242843 + AluJb SINE Alu 134 302 -10 23 78 0 0 chr21 28664888 28664939 -16242631 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr21 28665677 28665708 -16241862 + AT_rich Low_complexity Low_complexity 1 31 0 3158 122 4 4 chr21 28665708 28666193 -16241377 - L1PA14 LINE L1 -9 6152 5668 246 329 59 0 chr21 28668645 28668730 -16238840 - L3 LINE CR1 -2 1575 1486 264 91 0 0 chr21 28669817 28669861 -16237709 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2224 89 0 0 chr21 28669863 28670143 -16237427 - AluSg SINE Alu -30 280 1 1893 156 11 0 chr21 28671301 28671606 -16235964 + AluSx SINE Alu 1 308 0 239 227 261 0 chr21 28671816 28671904 -16235666 - L2 LINE L2 -2 3311 3201 834 283 75 84 chr21 28672080 28672287 -16235283 - LTR16B LTR ERVL 0 464 257 2529 59 0 0 chr21 28672287 28672593 -16234977 + AluY SINE Alu 4 309 -2 834 283 75 84 chr21 28672593 28672851 -16234719 - LTR16B LTR ERVL -207 257 3 181 158 53 70 chr21 28673328 28673385 -16234185 - MER5C DNA MER1_type -2 322 267 1535 203 34 39 chr21 28673959 28674314 -16233256 + MLT1A1 LTR MaLR 13 365 0 901 229 13 43 chr21 28675581 28675812 -16231758 + MER58A DNA MER1_type 1 224 0 508 284 151 14 chr21 28676115 28676333 -16231237 - MIR SINE MIR 0 262 15 474 333 37 42 chr21 28676747 28676936 -16230634 + MIR3 SINE MIR 4 191 -17 1556 219 103 49 chr21 28677642 28678135 -16229435 - MLT2B1 LTR ERVL 0 520 1 259 299 23 23 chr21 28678177 28678264 -16229306 + L2 LINE L2 3182 3268 -4 874 197 49 25 chr21 28679009 28679212 -16228358 + MER20 DNA MER1_type 1 208 -11 432 0 0 0 chr21 28679564 28679612 -16227958 + (TC)n Simple_repeat Simple_repeat 2 49 0 318 95 0 0 chr21 28679624 28679666 -16227904 + MLT2C2 LTR ERVL 423 464 0 191 36 36 0 chr21 28682033 28682061 -16225509 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 183 302 62 21 chr21 28682242 28682338 -16225232 + MIR SINE MIR 105 204 -58 331 123 71 0 chr21 28682338 28682492 -16225078 + (TA)n Simple_repeat Simple_repeat 2 166 0 244 313 20 95 chr21 28682605 28682693 -16224877 - L2 LINE L2 0 3272 3198 1903 119 35 0 chr21 28682693 28682979 -16224591 + AluSg SINE Alu 3 298 -12 244 313 20 95 chr21 28682979 28683037 -16224533 - L2 LINE L2 -74 3198 3137 233 211 19 0 chr21 28683288 28683340 -16224230 + MER112 DNA MER1_type 1 53 -207 227 255 0 0 chr21 28683396 28683443 -16224127 + (CATTC)n Simple_repeat Simple_repeat 3 49 0 1294 162 35 63 chr21 28683991 28684275 -16223295 - AluJo SINE Alu -14 298 23 1719 187 0 3 chr21 28684993 28685276 -16222294 + AluJb SINE Alu 1 282 -30 2007 144 83 44 chr21 28685734 28686144 -16221426 - MSTB LTR MaLR 0 426 1 2928 181 28 13 chr21 28686144 28686685 -16220885 - MSTB-int LTR MaLR 0 1651 1103 2012 149 70 43 chr21 28686687 28687102 -16220468 - MSTB LTR MaLR 0 426 1 211 238 158 50 chr21 28687246 28687347 -16220223 - L2 LINE L2 -4 3309 3198 2304 96 0 0 chr21 28687485 28687778 -16219792 - AluSg SINE Alu -17 293 1 2351 55 0 70 chr21 28688155 28688485 -16219085 + AluY SINE Alu 1 307 -4 249 244 116 23 chr21 28688490 28688576 -16218994 - MIR SINE MIR -32 230 137 2299 63 0 27 chr21 28690476 28690777 -16216793 - AluY SINE Alu -18 293 1 373 269 55 22 chr21 28691322 28691504 -16216066 + Charlie8 DNA MER1_type 351 538 -1879 196 354 12 12 chr21 28691652 28691734 -16215836 - MIR SINE MIR -161 101 20 185 336 15 95 chr21 28692017 28692154 -16215416 + L2 LINE L2 3180 3305 -8 2554 42 3 10 chr21 28693324 28693635 -16213935 - AluY SINE Alu -2 309 1 450 288 91 0 chr21 28695128 28695264 -16212306 + MIR SINE MIR 8 153 -63 351 0 0 0 chr21 28696622 28696661 -16210909 + (TG)n Simple_repeat Simple_repeat 2 40 0 591 266 142 35 chr21 28699436 28699662 -16207908 - MIR SINE MIR 0 262 13 439 365 24 39 chr21 28701417 28701672 -16205898 - MIR SINE MIR 0 262 12 491 239 78 28 chr21 28702076 28702256 -16205314 + MER53 DNA DNA 1 189 0 267 281 75 88 chr21 28702487 28702715 -16204855 + MLT1H LTR MaLR 163 387 -162 890 277 29 12 chr21 28702832 28703074 -16204496 - MIR SINE MIR -3 259 14 266 333 32 0 chr21 28703399 28703492 -16204078 + MIR SINE MIR 34 129 -133 238 358 55 0 chr21 28703975 28704084 -16203486 + MIR SINE MIR 72 186 -76 555 286 21 21 chr21 28704376 28704568 -16203002 - L2 LINE L2 -4 3309 3118 189 222 0 0 chr21 28704600 28704636 -16202934 - L2 LINE L2 -259 3054 3019 3859 72 4 6 chr21 28704694 28705222 -16202348 - L1PA8 LINE L1 -2 6170 5644 2892 62 7 3 chr21 28705222 28705638 -16201932 + L1PA8 LINE L1 5216 5633 -539 23 33 0 0 chr21 28706100 28706130 -16201440 + AT_rich Low_complexity Low_complexity 1 30 0 446 158 74 0 chr21 28707877 28707972 -16199598 + L1MA5A LINE L1 6196 6297 0 188 200 18 0 chr21 28708026 28708081 -16199489 + CT-rich Low_complexity Low_complexity 1 56 0 2626 130 20 2 chr21 28708696 28709134 -16198436 - L1MA2 LINE L1 0 6304 5859 891 191 0 0 chr21 28709134 28709307 -16198263 + L1 LINE L1 5065 5237 -909 26 0 0 0 chr21 28711927 28711953 -16195617 + AT_rich Low_complexity Low_complexity 1 26 0 1623 196 116 2 chr21 28711953 28712350 -16195220 - L1MA4 LINE L1 -5 6295 5854 279 133 0 0 chr21 28714075 28714120 -16193450 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 219 77 77 15 chr21 28714203 28714268 -16193302 + (TA)n Simple_repeat Simple_repeat 2 70 0 59 70 0 0 chr21 28714268 28714383 -16193187 + AT_rich Low_complexity Low_complexity 1 115 0 251 224 23 0 chr21 28714387 28714561 -16193009 + (TA)n Simple_repeat Simple_repeat 2 179 0 2397 212 36 2 chr21 28714958 28715435 -16192135 + MLT2B1 LTR ERVL 1 493 -27 1853 164 108 8 chr21 28715435 28715824 -16191746 + MSTA LTR MaLR 1 428 0 7875 159 9 45 chr21 28715826 28717289 -16190281 + MSTA-int LTR MaLR 3 1412 -168 2098 133 0 0 chr21 28717805 28718098 -16189472 - AluSq SINE Alu -20 293 1 1416 154 48 29 chr21 28718624 28718686 -16188884 + AluJb SINE Alu 5 64 -248 2727 85 3 0 chr21 28718686 28719040 -16188530 - THE1A LTR MaLR 0 355 1 1416 154 48 29 chr21 28719040 28719249 -16188321 + AluJb SINE Alu 64 281 -31 270 56 0 0 chr21 28719252 28719288 -16188282 + (CA)n Simple_repeat Simple_repeat 2 37 0 208 103 0 51 chr21 28719967 28720006 -16187564 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 37 23 0 0 chr21 28720460 28720504 -16187066 + AT_rich Low_complexity Low_complexity 1 44 0 2372 64 0 10 chr21 28722999 28723310 -16184260 - AluY SINE Alu -3 308 1 22 35 0 0 chr21 28723419 28723448 -16184122 + AT_rich Low_complexity Low_complexity 1 29 0 191 308 0 0 chr21 28723912 28723964 -16183606 + L2 LINE L2 3262 3313 0 360 312 142 37 chr21 28724126 28724507 -16183063 - L1ME3 LINE L1 -8 6154 5734 2439 71 0 0 chr21 28724568 28724879 -16182691 + AluY SINE Alu 1 311 0 1956 136 6 19 chr21 28724923 28725239 -16182331 - AluSx SINE Alu 0 312 1 29 70 0 0 chr21 28725322 28725379 -16182191 + AT_rich Low_complexity Low_complexity 1 57 0 784 264 52 11 chr21 28725434 28725802 -16181768 - L1ME3 LINE L1 -607 5555 5178 191 140 20 0 chr21 28727374 28727424 -16180146 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 553 162 10 0 chr21 28727709 28727808 -16179762 - AluJ/FLAM SINE Alu -212 100 1 456 19 0 0 chr21 28728352 28728405 -16179165 + (TG)n Simple_repeat Simple_repeat 1 53 0 864 300 30 11 chr21 28728592 28729074 -16178496 - L1ME LINE L1 -601 5561 5073 200 358 25 25 chr21 28729968 28730088 -16177482 + MIR3 SINE MIR 14 133 -75 2287 85 0 0 chr21 28730532 28730827 -16176743 + AluY SINE Alu 1 295 -16 2651 145 7 23 chr21 28731133 28731574 -16175996 + Tigger2a DNA MER2_type 1 434 0 246 298 11 0 chr21 28731590 28731684 -16175886 + (TA)n Simple_repeat Simple_repeat 1 95 0 2175 80 0 3 chr21 28733321 28733609 -16173961 - AluY SINE Alu -8 303 17 923 126 27 13 chr21 28733760 28733933 -16173637 + L1MA1 LINE L1 6040 6216 -87 26 74 0 0 chr21 28734817 28734871 -16172699 + AT_rich Low_complexity Low_complexity 1 54 0 245 275 104 47 chr21 28735830 28736003 -16171567 + MIR3 SINE MIR 8 193 -15 12456 117 2 2 chr21 28736030 28737924 -16169646 - L1P LINE L1 -1179 4967 3073 6670 86 2 5 chr21 28737925 28739054 -16168516 + L1PA8 LINE L1 5037 6171 -1 22 80 0 0 chr21 28739299 28739349 -16168221 + AT_rich Low_complexity Low_complexity 1 50 0 1790 145 10 14 chr21 28739764 28740054 -16167516 + AluSx SINE Alu 1 289 -23 295 256 70 79 chr21 28741707 28741829 -16165741 + L1M4 LINE L1 3386 3507 -2639 1683 156 12 41 chr21 28741829 28742149 -16165421 + AluSx SINE Alu 1 311 -1 295 256 70 79 chr21 28742149 28742241 -16165329 + L1M4 LINE L1 3507 3598 -2548 981 252 168 16 chr21 28742270 28742877 -16164693 + L1M4 LINE L1 4345 5043 -1103 289 114 68 114 chr21 28743071 28743159 -16164411 + L1M4 LINE L1 5353 5436 -738 1693 131 22 29 chr21 28743168 28743442 -16164128 + AluSg SINE Alu 3 274 -36 3018 189 9 6 chr21 28745675 28746210 -16161360 - MER44D DNA MER2_type -8 597 6 2113 122 72 17 chr21 28746267 28746612 -16160958 - THE1B LTR MaLR 0 364 1 2641 113 0 0 chr21 28746689 28747053 -16160517 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr21 28748186 28748207 -16159363 + AT_rich Low_complexity Low_complexity 1 21 0 261 196 0 0 chr21 28748978 28749034 -16158536 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 386 291 18 0 chr21 28749187 28749297 -16158273 - MER81 DNA DNA 0 114 3 885 260 14 5 chr21 28749608 28749827 -16157743 + MER58A DNA MER1_type 3 223 -1 2395 71 0 3 chr21 28750628 28750936 -16156634 + AluY SINE Alu 1 307 -4 392 211 125 8 chr21 28751335 28751463 -16156107 - L1MD3 LINE L1 -1657 6338 6196 4117 260 62 71 chr21 28751464 28752523 -16155047 - L1MEc LINE L1 -1743 4472 3406 2042 139 24 0 chr21 28752523 28752862 -16154708 + L1PA14 LINE L1 5815 6161 0 4117 260 62 71 chr21 28752862 28753587 -16153983 - L1MEc LINE L1 -2809 3406 2677 2511 125 0 5 chr21 28753587 28753964 -16153606 - THE1C LTR MaLR 0 375 1 4117 260 62 71 chr21 28753964 28755072 -16152498 - L1MEc LINE L1 -3538 2677 1633 1484 250 7 3 chr21 28755093 28755397 -16152173 + MER70A LTR ERVL 124 428 -44 784 246 53 0 chr21 28755579 28755750 -16151820 + MER63A DNA MER1_type 31 210 0 2422 66 16 0 chr21 28757029 28757332 -16150238 - AluY SINE Alu -3 308 1 21 0 0 0 chr21 28758159 28758180 -16149390 + AT_rich Low_complexity Low_complexity 1 21 0 1735 165 104 53 chr21 28759247 28759459 -16148111 - Tigger2a DNA MER2_type -2274 434 234 2318 53 0 13 chr21 28759459 28759759 -16147811 + AluY SINE Alu 16 311 0 1735 165 104 53 chr21 28759759 28759959 -16147611 - Tigger2a DNA MER2_type -2474 234 1 219 69 0 0 chr21 28760801 28760830 -16146740 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1867 72 4 19 chr21 28760842 28761104 -16146466 - AluY SINE Alu -17 294 37 402 372 93 25 chr21 28761229 28761687 -16145883 - L2 LINE L2 -402 2912 2355 359 182 30 121 chr21 28761687 28761819 -16145751 - L1MA9 LINE L1 -9 6303 6184 2887 188 112 31 chr21 28761824 28762589 -16144981 - L1MA9 LINE L1 -232 6080 5254 387 27 1 14 chr21 28762585 28762651 -16144919 - L1M3 LINE L1 -373 5808 5743 * 284 364 71 4 chr21 28762850 28763010 -16144560 - MIR3 SINE MIR -78 130 6 2098 115 0 0 chr21 28763177 28763511 -16144059 - AluSc SINE Alu 0 335 2 1480 227 45 45 chr21 28765688 28766155 -16141415 + MLT1C LTR MaLR 1 467 0 21 0 0 0 chr21 28766246 28766267 -16141303 + AT_rich Low_complexity Low_complexity 1 21 0 273 203 0 17 chr21 28766560 28766619 -16140951 - L2 LINE L2 -1 3312 3255 2415 75 0 0 chr21 28768105 28768400 -16139170 + AluY SINE Alu 1 295 -16 278 308 15 0 chr21 28769235 28769300 -16138270 - L2 LINE L2 -5 3267 3202 21 0 0 0 chr21 28769569 28769590 -16137980 + AT_rich Low_complexity Low_complexity 1 21 0 711 168 38 32 chr21 28769760 28769945 -16137625 + L1MA7 LINE L1 6106 6291 0 2159 139 0 0 chr21 28770520 28770830 -16136740 - AluSx SINE Alu -2 310 1 303 286 55 11 chr21 28771324 28771415 -16136155 + L2 LINE L2 3214 3308 -5 207 374 25 45 chr21 28772435 28772633 -16134937 + L2 LINE L2 1889 2082 -1232 3361 92 12 145 chr21 28772722 28773487 -16134083 - L1MA2 LINE L1 -1 7722 7060 814 132 0 0 chr21 28773567 28773688 -16133882 - L1MA2 LINE L1 -663 7060 6940 13098 199 52 5 chr21 28773689 28774975 -16132595 - L1MA2 LINE L1 -798 6767 5542 2231 92 3 0 chr21 28774975 28775268 -16132302 - AluSp SINE Alu -19 294 1 13098 199 52 5 chr21 28775268 28777413 -16130157 - L1MA2 LINE L1 -2023 5542 3169 15038 219 20 12 chr21 28777435 28781731 -16125839 - L1PA15 LINE L1 -11 6805 2544 2142 97 14 3 chr21 28781731 28782019 -16125551 + AluY SINE Alu 1 291 -20 15038 219 20 12 chr21 28782019 28782870 -16124700 - L1PA15 LINE L1 -4272 2544 1600 513 0 0 0 chr21 28782870 28782927 -16124643 + (TG)n Simple_repeat Simple_repeat 2 58 0 15038 219 20 12 chr21 28782927 28783293 -16124277 - L1PA15 LINE L1 -5216 1600 1238 21 57 0 0 chr21 28783375 28783410 -16124160 + AT_rich Low_complexity Low_complexity 1 35 0 266 130 19 19 chr21 28783711 28783765 -16123805 + L1MC3 LINE L1 5419 5472 -2570 2466 169 51 14 chr21 28783819 28784327 -16123243 + L1MC3 LINE L1 5420 5946 -1839 1224 298 62 39 chr21 28784591 28785602 -16121968 + L1MC4a LINE L1 3659 4693 -1453 199 70 23 23 chr21 28785834 28785877 -16121693 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1402 157 91 0 chr21 28785889 28786131 -16121439 - AluSq SINE Alu -49 264 1 1096 228 16 4 chr21 28786587 28786841 -16120729 + L1MC4a LINE L1 5317 5573 -2235 862 284 154 27 chr21 28786841 28787288 -16120282 + MLT1D LTR MaLR 2 505 0 1024 284 34 39 chr21 28787331 28787796 -16119774 + L1MC4a LINE L1 5621 6083 -1725 1347 271 35 78 chr21 28787798 28788213 -16119357 - L1ME3 LINE L1 -188 5974 5602 2175 117 3 3 chr21 28788213 28788522 -16119048 - AluSx SINE Alu -1 311 3 1347 271 35 78 chr21 28788522 28788827 -16118743 - L1ME3 LINE L1 -560 5602 5285 249 273 13 0 chr21 28788958 28789035 -16118535 - L1ME3 LINE L1 -1444 4702 4625 1369 157 111 32 chr21 28789036 28789353 -16118217 + THE1C LTR MaLR 3 429 -28 2061 129 3 6 chr21 28789353 28789679 -16117891 + MSTA-int LTR MaLR 1327 1651 0 2376 128 25 48 chr21 28789679 28790117 -16117453 + MSTA LTR MaLR 1 428 0 341 282 8 30 chr21 28790705 28790836 -16116734 + GA-rich Low_complexity Low_complexity 2 129 0 422 314 75 13 chr21 28792194 28792353 -16115217 - MIR3 SINE MIR -2 206 38 381 93 0 0 chr21 28792515 28792569 -16115001 + (TA)n Simple_repeat Simple_repeat 1 54 0 2913 64 3 0 chr21 28792570 28792943 -16114627 - L1PA7 LINE L1 -18 6136 5763 2013 90 0 14 chr21 28794306 28794583 -16112987 + AluSq SINE Alu 2 274 -39 255 281 83 31 chr21 28795541 28795769 -16111801 + L1M4 LINE L1 4416 4655 -1491 21 36 0 0 chr21 28795929 28795957 -16111613 + AT_rich Low_complexity Low_complexity 1 28 0 2738 216 105 31 chr21 28799002 28799771 -16107799 + LTR1B LTR ERV1 1 826 0 1781 148 0 72 chr21 28800574 28800905 -16106665 - AluSx SINE Alu -5 307 1 403 127 45 18 chr21 28800986 28801457 -16106113 + (TA)n Simple_repeat Simple_repeat 1 483 0 887 288 100 81 chr21 28801625 28802683 -16104887 - L2 LINE L2 -1 3312 2245 180 219 0 0 chr21 28803159 28803200 -16104370 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 365 24 40 chr21 28803394 28803520 -16104050 + L2 LINE L2 3144 3267 -5 432 221 64 58 chr21 28804213 28804385 -16103185 + L2 LINE L2 3134 3306 -7 1818 160 27 0 chr21 28804385 28804685 -16102885 + AluSx SINE Alu 1 308 -4 186 171 0 0 chr21 28804696 28804737 -16102833 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 32 67 0 0 chr21 28805523 28805583 -16101987 + AT_rich Low_complexity Low_complexity 1 60 0 355 316 58 7 chr21 28806261 28806400 -16101170 - MIR SINE MIR -71 191 46 26 0 0 0 chr21 28806996 28807022 -16100548 + AT_rich Low_complexity Low_complexity 1 26 0 1727 164 4 4 chr21 28807125 28807434 -16100136 - AluSx SINE Alu 0 309 1 1371 170 73 47 chr21 28808303 28808737 -16098833 + THE1C LTR MaLR 1 428 0 449 356 95 40 chr21 28808898 28809786 -16097784 - L2 LINE L2 -1293 2021 1086 427 294 17 50 chr21 28810607 28810787 -16096783 + MIR SINE MIR 67 240 -22 186 43 0 0 chr21 28810809 28810832 -16096738 + (CAT)n Simple_repeat Simple_repeat 2 24 0 294 306 94 65 chr21 28811242 28811487 -16096083 + MLT1I LTR MaLR 80 331 -78 1011 148 0 13 chr21 28811948 28812141 -16095429 - AluSg/x SINE Alu 0 325 135 420 188 0 0 chr21 28812524 28812604 -16094966 + MADE1 DNA Mariner 1 80 0 824 300 104 42 chr21 28813678 28813873 -16093697 + L1ME1 LINE L1 44 225 -6171 1312 240 91 8 chr21 28813873 28814236 -16093334 - MSTD LTR MaLR -3 393 1 824 300 104 42 chr21 28814236 28815161 -16092409 + L1ME1 LINE L1 225 1234 -5162 1940 229 19 41 chr21 28815257 28815725 -16091845 - MLT2B1 LTR ERVL -58 462 5 203 0 37 0 chr21 28815848 28815875 -16091695 + (CA)n Simple_repeat Simple_repeat 2 29 0 344 299 146 16 chr21 28815885 28816256 -16091314 + L1ME1 LINE L1 1792 2210 -4186 1049 254 72 9 chr21 28816301 28816636 -16090934 + L1ME1 LINE L1 5336 5691 -544 436 278 37 38 chr21 28816698 28817071 -16090499 + L1ME1 LINE L1 5820 6230 -5 316 200 50 10 chr21 28817113 28817213 -16090357 + (TA)n Simple_repeat Simple_repeat 2 105 0 754 229 30 0 chr21 28817254 28817450 -16090120 + AluJo SINE Alu 113 313 0 1246 124 31 0 chr21 28817711 28817904 -16089666 - L1PA13 LINE L1 -4 6159 5961 21 0 0 0 chr21 28817994 28818015 -16089555 + AT_rich Low_complexity Low_complexity 1 21 0 900 235 25 13 chr21 28818341 28818579 -16088991 - L1ME3 LINE L1 -1 6161 5921 243 125 0 0 chr21 28819981 28820021 -16087549 + (TC)n Simple_repeat Simple_repeat 2 41 0 306 50 0 0 chr21 28820023 28820063 -16087507 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 70 0 0 chr21 28821256 28821299 -16086271 + AT_rich Low_complexity Low_complexity 1 43 0 698 310 87 52 chr21 28821967 28822451 -16085119 - L2 LINE L2 -1 3312 2812 231 233 16 95 chr21 28822654 28822843 -16084727 + (CTGGGG)n Simple_repeat Simple_repeat 5 178 0 3911 195 46 32 chr21 28823293 28825028 -16082542 - L1PA16 LINE L1 -5 6161 4402 1206 255 47 90 chr21 28825107 28825597 -16081973 - MLT1E LTR MaLR -123 470 2 350 308 133 11 chr21 28825755 28826034 -16081536 - L1M4 LINE L1 -2713 3433 3121 834 211 0 52 chr21 28826034 28826266 -16081304 + L1MA10 LINE L1 6111 6330 -4 22 0 0 0 chr21 28826298 28826320 -16081250 + AT_rich Low_complexity Low_complexity 1 22 0 219 263 18 0 chr21 28827461 28827518 -16080052 + MIR SINE MIR 92 149 -113 2214 80 50 10 chr21 28827530 28827829 -16079741 - AluY SINE Alu 0 311 1 1898 116 33 18 chr21 28827831 28828107 -16079463 - AluSx SINE Alu -11 301 22 244 336 33 8 chr21 28828107 28828229 -16079341 + MIR SINE MIR 137 261 -1 181 86 0 114 chr21 28829094 28829129 -16078441 - L2 LINE L2 -1641 1673 1643 1158 202 73 127 chr21 28829728 28830248 -16077322 - L1MD3 LINE L1 -10 7985 7494 1601 113 58 35 chr21 28830612 28830897 -16076673 + AluSc SINE Alu 17 307 0 2683 288 39 19 chr21 28832868 28833615 -16073955 + L1M4b LINE L1 86 855 -6004 2208 122 36 30 chr21 28833615 28833977 -16073593 + THE1B LTR MaLR 1 364 0 2683 288 39 19 chr21 28833977 28834093 -16073477 + L1M4b LINE L1 855 967 -5892 781 196 16 16 chr21 28834119 28834313 -16073257 - L1MA9 LINE L1 0 6312 6119 657 212 50 6 chr21 28834322 28834501 -16073069 + L1MA9 LINE L1 5958 6144 -168 * 1754 257 77 7 chr21 28834484 28835029 -16072541 + L1M4b LINE L1 980 1562 -5297 * 12071 192 31 12 chr21 28835019 28837313 -16070257 + L1M1 LINE L1 9 2346 -5219 4614 166 2 0 chr21 28837321 28838117 -16069453 + L1P LINE L1 4230 5027 -1119 1688 187 3 0 chr21 28838132 28838438 -16069132 - AluSx SINE Alu 0 307 1 309 220 121 0 chr21 28838438 28838529 -16069041 - L1MDa LINE L1 -4789 1751 1650 195 100 0 0 chr21 28839022 28839052 -16068518 + (TATG)n Simple_repeat Simple_repeat 4 33 0 23 0 0 0 chr21 28839373 28839396 -16068174 + AT_rich Low_complexity Low_complexity 1 23 0 371 310 77 85 chr21 28839427 28840629 -16066941 + L1M1 LINE L1 3544 4736 -2829 5564 88 18 12 chr21 28840770 28841589 -16065981 + L1PA13 LINE L1 5328 6151 -12 299 22 0 44 chr21 28841592 28841637 -16065933 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2142 113 0 0 chr21 28841640 28841931 -16065639 - AluSc SINE Alu -18 291 1 311 270 47 20 chr21 28841982 28842130 -16065440 + L1M1 LINE L1 4911 5062 -2503 1334 197 17 38 chr21 28842137 28842482 -16065088 - MER44D DNA MER2_type -1 608 1 1255 249 46 82 chr21 28842517 28842978 -16064592 + MLT1E LTR MaLR 27 470 -123 29 28 0 0 chr21 28844746 28844782 -16062788 + AT_rich Low_complexity Low_complexity 1 36 0 508 341 74 14 chr21 28845067 28845284 -16062286 + MIR SINE MIR 8 237 -25 443 293 84 13 chr21 28847654 28847879 -16059691 + Charlie7 DNA MER1_type 1936 2176 -436 280 241 43 28 chr21 28847994 28848135 -16059435 + Charlie7 DNA MER1_type 2470 2612 0 1241 231 129 2 chr21 28848149 28848568 -16059002 + Charlie1b DNA MER1_type 7 478 -45 518 315 125 56 chr21 28849055 28849503 -16058067 - MLT1J LTR MaLR 0 511 33 21 0 0 0 chr21 28851183 28851204 -16056366 + AT_rich Low_complexity Low_complexity 1 21 0 2244 107 0 3 chr21 28851753 28852051 -16055519 - AluSq SINE Alu -16 297 1 2114 120 0 3 chr21 28853121 28853420 -16054150 + AluSx SINE Alu 1 298 -14 531 186 20 0 chr21 28853582 28853684 -16053886 - MER70B LTR ERVL -21 557 454 2012 116 10 32 chr21 28854027 28854338 -16053232 - AluSx SINE Alu -8 304 1 1949 179 77 15 chr21 28854483 28854886 -16052684 - MSTA LTR MaLR 0 428 1 9181 166 30 10 chr21 28854886 28856504 -16051066 - MSTA-int LTR MaLR 0 1651 1 477 158 12 0 chr21 28856505 28856587 -16050983 - MSTA LTR MaLR -2 424 342 1795 104 93 25 chr21 28856766 28857044 -16050526 - AluSg SINE Alu -13 297 1 23 68 0 0 chr21 28858486 28858530 -16049040 + AT_rich Low_complexity Low_complexity 1 44 0 961 309 48 39 chr21 28859393 28859826 -16047744 - MLT1H LTR MaLR -112 437 1 2087 133 0 7 chr21 28860295 28860595 -16046975 - AluSx SINE Alu -14 298 1 1509 181 14 40 chr21 28860888 28861242 -16046328 - L1MA4 LINE L1 -5 6295 5951 964 73 0 0 chr21 28861759 28861882 -16045688 + AluSg/x SINE Alu 176 298 -14 42 57 0 0 chr21 28862471 28862541 -16045029 + AT_rich Low_complexity Low_complexity 1 70 0 438 337 44 46 chr21 28862736 28863148 -16044422 + L1MC4 LINE L1 6528 7023 -870 1366 234 17 20 chr21 28863158 28863504 -16044066 + L1 LINE L1 4757 5101 -1045 269 176 0 0 chr21 28863499 28863550 -16044020 + L1MB1 LINE L1 6072 6122 -67 * 1937 114 16 36 chr21 28863577 28863885 -16043685 + AluSx SINE Alu 1 302 -10 232 221 63 21 chr21 28864017 28864112 -16043458 + L1MC5 LINE L1 7110 7208 -753 507 295 64 44 chr21 28864265 28864767 -16042803 + L1MC5 LINE L1 7275 7786 -175 292 219 16 0 chr21 28866516 28866580 -16040990 + L2 LINE L2 3249 3313 0 2021 114 0 66 chr21 28867505 28867839 -16039731 - AluSq SINE Alu -1 312 1 1863 152 37 56 chr21 28867898 28868274 -16039296 + THE1C LTR MaLR 1 369 -6 330 138 0 0 chr21 28868384 28868442 -16039128 + (GA)n Simple_repeat Simple_repeat 1 58 0 9248 32 6 0 chr21 28869218 28871102 -16036468 - L1PA4 LINE L1 -2 6153 4263 2322 43 0 0 chr21 28871102 28871381 -16036189 + L1PA4 LINE L1 3985 4263 -1883 1003 306 49 3 chr21 28871394 28871718 -16035852 + ERVL LTR ERVL 3456 3794 -1970 2456 152 16 30 chr21 28872121 28872561 -16035009 - Tigger2a DNA MER2_type 0 434 1 1879 128 7 0 chr21 28873316 28873589 -16033981 + AluSq SINE Alu 22 296 -17 21 0 0 0 chr21 28873805 28873826 -16033744 + AT_rich Low_complexity Low_complexity 1 21 0 2045 118 0 7 chr21 28874328 28874634 -16032936 + L1PB1 LINE L1 5845 6148 -3 2223 129 8 19 chr21 28875144 28875523 -16032047 - THE1C LTR MaLR 0 375 1 204 374 11 11 chr21 28875734 28875825 -16031745 - L2 LINE L2 -45 3227 3137 228 185 0 19 chr21 28876929 28876983 -16030587 + (TA)n Simple_repeat Simple_repeat 2 54 0 194 182 0 23 chr21 28878517 28878561 -16029009 - L2 LINE L2 0 3313 3271 33 25 0 0 chr21 28878687 28878727 -16028843 + AT_rich Low_complexity Low_complexity 1 40 0 450 269 84 30 chr21 28879107 28879405 -16028165 + L1MC5 LINE L1 7261 7574 -387 400 152 0 51 chr21 28879399 28879478 -16028092 + L1MC1 LINE L1 3968 4042 -2104 * 4798 214 45 16 chr21 28879615 28880445 -16027125 + L1MC1 LINE L1 4041 4846 -1487 2440 76 3 0 chr21 28880445 28880749 -16026821 - AluY SINE Alu -6 305 1 4798 214 45 16 chr21 28880749 28882129 -16025441 + L1MC1 LINE L1 4846 6317 -16 2104 72 4 0 chr21 28882219 28882498 -16025072 + L1PA5 LINE L1 5874 6153 -1 302 309 27 36 chr21 28882504 28882614 -16024956 + L1MC4 LINE L1 7790 7898 -144 186 354 15 0 chr21 28884773 28884838 -16022732 - L2 LINE L2 -568 2746 2681 209 342 40 0 chr21 28885045 28885121 -16022449 - L2 LINE L2 -947 2367 2289 245 242 76 0 chr21 28885125 28885191 -16022379 + L1MB7 LINE L1 2 72 -6470 * 564 219 20 90 chr21 28885176 28885377 -16022193 + L1MB7 LINE L1 1916 2102 -4544 2724 235 35 42 chr21 28885384 28886469 -16021101 + L1MB7 LINE L1 3408 4484 -2160 573 104 0 10 chr21 28886497 28886593 -16020977 + AluY SINE Alu 216 310 -1 1293 261 56 12 chr21 28886598 28887081 -16020489 + L1MB7 LINE L1 4488 4991 -1653 4021 145 29 4 chr21 28887085 28887776 -16019794 - L1MA5 LINE L1 -125 6175 5468 641 171 0 0 chr21 28887795 28887912 -16019658 + L1MA5 LINE L1 6181 6297 -3 751 222 26 0 chr21 28887927 28888121 -16019449 + L1MB7 LINE L1 4987 5185 -1459 3779 37 16 0 chr21 28888144 28888885 -16018685 - L1PA5 LINE L1 -423 5731 4982 3214 65 0 0 chr21 28888885 28889299 -16018271 + L1PA5 LINE L1 5740 6153 -1 3812 217 35 25 chr21 28889300 28889646 -16017924 + L1MB7 LINE L1 5191 5532 -1150 2271 110 48 20 chr21 28889646 28890000 -16017570 - THE1B LTR MaLR 0 364 1 3812 217 35 25 chr21 28890000 28891031 -16016539 + L1MB7 LINE L1 5532 6578 -104 1915 163 119 13 chr21 28891031 28891418 -16016152 - MSTA LTR MaLR 0 428 1 3812 217 35 25 chr21 28891418 28891500 -16016070 + L1MB7 LINE L1 6578 6658 -24 1000 216 30 10 chr21 28891639 28891838 -16015732 + MER20 DNA MER1_type 17 219 0 522 333 85 12 chr21 28892088 28892334 -16015236 + LTR33 LTR ERVL 1 264 -257 1122 219 108 44 chr21 28892477 28892820 -16014750 + MLT1A1 LTR MaLR 1 365 0 473 195 9 26 chr21 28893519 28893632 -16013938 - L1MC3 LINE L1 -3 7782 7672 508 224 68 20 chr21 28893636 28893783 -16013787 + MLT1D LTR MaLR 3 156 -349 661 275 58 27 chr21 28893808 28894066 -16013504 + MLT1G3 LTR MaLR 69 334 -196 236 208 26 26 chr21 28894121 28894198 -16013372 + MLT1G3 LTR MaLR 512 588 -2 466 309 125 0 chr21 28894200 28894352 -16013218 - MER91A DNA MER1_type -13 183 13 1680 220 47 18 chr21 28897099 28897549 -16010021 - MLT1C LTR MaLR -4 463 1 628 284 63 29 chr21 28897803 28898042 -16009528 + MIR SINE MIR 2 248 -14 1810 171 70 23 chr21 28898148 28898492 -16009078 + THE1B LTR MaLR 3 362 -2 11332 103 3 3 chr21 28898494 28900074 -16007496 + THE1B-int LTR MaLR 1 1580 0 2040 149 54 17 chr21 28900076 28900425 -16007145 + THE1B LTR MaLR 3 364 0 207 371 22 0 chr21 28900987 28901076 -16006494 - L2 LINE L2 -195 3077 2987 2303 111 25 22 chr21 28901079 28901440 -16006130 - THE1B LTR MaLR -2 362 1 1218 90 6 0 chr21 28901440 28901617 -16005953 - THE1B-int LTR MaLR 0 1580 1403 1152 262 134 32 chr21 28902247 28902785 -16004785 + MLT1E LTR MaLR 1 593 0 233 336 186 0 chr21 28902968 28903108 -16004462 + MIR SINE MIR 7 172 -90 435 311 37 49 chr21 28903524 28903688 -16003882 - MER5B DNA MER1_type -16 162 1 201 257 176 0 chr21 28903862 28903936 -16003634 - L2 LINE L2 -2 3270 3184 180 313 0 0 chr21 28904320 28904368 -16003202 - MIR SINE MIR -49 213 166 2628 169 119 38 chr21 28904945 28905670 -16001900 + LTR1B LTR ERV1 1 826 0 229 365 35 35 chr21 28906291 28906436 -16001134 - L2 LINE L2 -556 2758 2614 241 254 18 0 chr21 28909070 28909125 -15998445 + MLT1H LTR MaLR 138 193 -356 3145 166 27 72 chr21 28909125 28910065 -15997505 + L1MA9 LINE L1 5042 5938 -374 304 115 33 33 chr21 28910065 28910187 -15997383 + (TA)n Simple_repeat Simple_repeat 1 122 0 1915 186 28 3 chr21 28910755 28911109 -15996461 - MLT1A1 LTR MaLR -2 363 1 36 23 0 0 chr21 28911172 28911215 -15996355 + AT_rich Low_complexity Low_complexity 1 43 0 230 342 81 54 chr21 28911472 28911770 -15995800 - L2 LINE L2 -430 2884 2579 577 119 3 110 chr21 28912684 28912708 -15994862 - L1PA16 LINE L1 -331 5835 5810 1238 140 17 43 chr21 28912708 28912943 -15994627 - L1PA16 LINE L1 -7 6159 5931 577 119 3 110 chr21 28912943 28913051 -15994519 - L1PA16 LINE L1 -356 5810 5743 359 230 7 104 chr21 28913206 28913288 -15994282 - L2 LINE L2 -48 3265 3199 1473 246 72 37 chr21 28913288 28913775 -15993795 - MLT1D LTR MaLR 0 505 2 359 230 7 104 chr21 28913775 28913827 -15993743 - L2 LINE L2 -114 3199 3144 2114 129 0 3 chr21 28913827 28914137 -15993433 + AluSx SINE Alu 1 309 -3 672 117 0 0 chr21 28914145 28914239 -15993331 + AluSg/x SINE Alu 194 287 -22 202 300 58 50 chr21 28914374 28914494 -15993076 - L2 LINE L2 -289 3024 2904 695 303 40 34 chr21 28914498 28914878 -15992692 - L2 LINE L2 -1102 2212 1831 354 45 0 0 chr21 28915312 28915356 -15992214 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2152 110 7 0 chr21 28915368 28915667 -15991903 - AluSx SINE Alu -11 301 1 1546 189 54 47 chr21 28916050 28916437 -15991133 - MLT1B LTR MaLR 0 390 1 523 327 105 13 chr21 28916923 28917229 -15990341 - L1ME LINE L1 -519 5651 5318 386 284 117 46 chr21 28917305 28917587 -15989983 - L1ME LINE L1 -869 5277 4976 894 218 21 0 chr21 28917589 28917782 -15989788 - MER20 DNA MER1_type 0 219 23 848 182 0 26 chr21 28917796 28917950 -15989620 - AluJb SINE Alu -30 282 133 1160 129 0 11 chr21 28917950 28918128 -15989442 - AluSg/x SINE Alu 0 312 137 376 278 75 28 chr21 28918195 28918515 -15989055 - L1ME LINE L1 -1713 4433 4099 1799 201 16 69 chr21 28918562 28918994 -15988576 + MLT2D LTR ERVL 6 414 0 801 268 119 38 chr21 28919104 28919447 -15988123 + MLT1C LTR MaLR 97 467 0 1566 215 131 48 chr21 28919515 28920072 -15987498 + LTR1B LTR ERV1 1 603 -223 264 322 17 42 chr21 28920081 28920199 -15987371 + LTR28 LTR ERV1 869 983 -37 1102 260 88 15 chr21 28920293 28920624 -15986946 - Charlie1 DNA MER1_type -2406 355 1 4949 164 33 14 chr21 28922311 28923577 -15983993 - L1MB1 LINE L1 0 6168 4872 3643 200 31 22 chr21 28923584 28924430 -15983140 + L1 LINE L1 3949 4805 -1341 1808 167 10 0 chr21 28924430 28924730 -15982840 + AluSx SINE Alu 1 303 -9 3643 200 31 22 chr21 28924730 28924783 -15982787 + L1 LINE L1 4805 4856 -1290 2008 123 11 0 chr21 28925453 28925750 -15981820 + AluSg SINE Alu 1 300 0 5332 176 32 29 chr21 28925843 28926981 -15980589 - L1MC1 LINE L1 -6 6327 5186 22 0 0 0 chr21 28927470 28927492 -15980078 + AT_rich Low_complexity Low_complexity 1 22 0 242 270 36 54 chr21 28928650 28928761 -15978809 - L1MC/D LINE L1 -2002 5806 5698 2029 125 57 25 chr21 28928782 28929135 -15978435 - THE1B LTR MaLR 0 364 1 11105 110 8 8 chr21 28929135 28930714 -15976856 - THE1B-int LTR MaLR 0 1580 1 2174 121 73 9 chr21 28930716 28931056 -15976514 - THE1B LTR MaLR -2 362 1 292 302 75 21 chr21 28931122 28931421 -15976149 - L1MC/D LINE L1 -545 5625 5306 1626 176 3 15 chr21 28931421 28931751 -15975819 - L1MB3 LINE L1 -2 6181 5856 292 302 75 21 chr21 28931751 28931777 -15975793 - L1MC/D LINE L1 -864 5306 5283 318 26 0 0 chr21 28931909 28931948 -15975622 + (TG)n Simple_repeat Simple_repeat 2 40 0 1783 201 22 19 chr21 28932001 28932365 -15975205 + MLT1A1 LTR MaLR 1 365 0 734 224 77 6 chr21 28932893 28933063 -15974507 - L1MB5 LINE L1 -1 6173 5992 1779 142 18 48 chr21 28933933 28934264 -15973306 - MSTC LTR MaLR 0 428 108 294 313 110 25 chr21 28934307 28934753 -15972817 + L1ME LINE L1 3161 3660 -2486 5703 127 37 18 chr21 28934753 28936488 -15971082 - L1PA15 LINE L1 -2 6163 4414 294 313 110 25 chr21 28936488 28936568 -15971002 + L1ME LINE L1 3660 3732 -2414 375 283 66 56 chr21 28936657 28936961 -15970609 + L1ME LINE L1 5476 5782 -402 2334 80 3 0 chr21 28937171 28937472 -15970098 + AluSp SINE Alu 1 302 -11 2025 168 6 31 chr21 28937495 28937852 -15969718 + MER7A DNA MER2_type 1 346 0 23 0 0 0 chr21 28938014 28938037 -15969533 + AT_rich Low_complexity Low_complexity 1 23 0 2217 120 0 0 chr21 28938077 28938378 -15969192 - AluSx SINE Alu -11 301 1 23 33 0 0 chr21 28938529 28938559 -15969011 + AT_rich Low_complexity Low_complexity 1 30 0 334 295 3 7 chr21 28939292 28939434 -15968136 + L1MC/D LINE L1 5451 5591 -530 33 56 0 0 chr21 28939952 28940006 -15967564 + AT_rich Low_complexity Low_complexity 1 54 0 2257 122 42 11 chr21 28940666 28941019 -15966551 - THE1B LTR MaLR 0 364 1 277 212 0 24 chr21 28941027 28941112 -15966458 + GA-rich Low_complexity Low_complexity 3 85 0 1273 155 3 119 chr21 28942541 28942876 -15964694 - L1 LINE L1 -1239 4907 4612 1272 158 0 9 chr21 28942870 28943092 -15964478 + L1MA4 LINE L1 5545 5764 -536 * 1148 184 49 16 chr21 28943092 28943336 -15964234 + AluJo SINE Alu 58 309 -3 2283 184 23 6 chr21 28943343 28943816 -15963754 + L1MA4 LINE L1 5814 6294 -6 180 276 17 17 chr21 28944384 28944442 -15963128 - L3 LINE CR1 -311 1266 1209 2321 104 3 0 chr21 28945883 28946190 -15961380 - AluSg SINE Alu -2 308 1 26 30 0 0 chr21 28946509 28946542 -15961028 + AT_rich Low_complexity Low_complexity 1 33 0 2179 114 7 3 chr21 28946638 28946946 -15960624 + AluSx SINE Alu 1 309 -3 208 147 0 0 chr21 28947038 28947072 -15960498 + (A)n Simple_repeat Simple_repeat 1 34 0 228 375 72 29 chr21 28947190 28947398 -15960172 - MIR SINE MIR -26 236 20 225 122 24 0 chr21 28947541 28947582 -15959988 - Alu SINE Alu -7 292 251 258 176 0 0 chr21 28947672 28947723 -15959847 + GA-rich Low_complexity Low_complexity 2 52 0 261 57 0 0 chr21 28947895 28947930 -15959640 + (TG)n Simple_repeat Simple_repeat 2 36 0 2030 72 4 0 chr21 28947931 28948180 -15959390 + AluSg SINE Alu 46 295 -15 22 0 0 0 chr21 28948312 28948334 -15959236 + AT_rich Low_complexity Low_complexity 1 22 0 202 192 19 19 chr21 28949461 28949513 -15958057 + A-rich Low_complexity Low_complexity 1 52 0 502 294 91 50 chr21 28949618 28949938 -15957632 + L2 LINE L2 2900 3232 -81 261 378 16 0 chr21 28949973 28950100 -15957470 - L2 LINE L2 -488 2826 2698 2170 13 0 0 chr21 28950706 28950944 -15956626 - AluYb8 SINE Alu -4 314 77 1773 174 0 14 chr21 28951161 28951454 -15956116 + AluJo SINE Alu 3 291 -21 23 33 0 0 chr21 28951591 28951621 -15955949 + AT_rich Low_complexity Low_complexity 1 30 0 23 86 0 0 chr21 28952640 28952698 -15954872 + AT_rich Low_complexity Low_complexity 1 58 0 841 250 11 11 chr21 28954328 28954516 -15953054 + MER5A DNA MER1_type 2 189 0 255 61 0 0 chr21 28955265 28955298 -15952272 + (CA)n Simple_repeat Simple_repeat 2 34 0 519 153 37 18 chr21 28955298 28955461 -15952109 + GA-rich Low_complexity Low_complexity 1 166 0 223 219 12 12 chr21 28955525 28955607 -15951963 + GA-rich Low_complexity Low_complexity 1 82 0 1706 211 65 3 chr21 28955609 28955979 -15951591 - MLT2D LTR ERVL -19 395 3 389 296 86 18 chr21 28956205 28956357 -15951213 + MER5B DNA MER1_type 7 189 0 698 194 33 50 chr21 28956983 28957163 -15950407 + MER5A DNA MER1_type 10 186 -3 29 0 0 0 chr21 28957285 28957314 -15950256 + AT_rich Low_complexity Low_complexity 1 29 0 17578 101 17 0 chr21 28957572 28960947 -15946623 + L1PA7 LINE L1 2761 6150 -4 563 311 157 28 chr21 28961295 28961998 -15945572 - L1M4 LINE L1 -2608 3538 2746 225 350 0 8 chr21 28962734 28962851 -15944719 - HAL1b LINE L1 -627 721 606 373 347 82 28 chr21 28963056 28963347 -15944223 - HAL1b LINE L1 -917 431 125 287 269 42 17 chr21 28965101 28965220 -15942350 - L1M LINE L1 -2380 5428 5307 229 195 13 13 chr21 28965306 28965383 -15942187 + (TG)n Simple_repeat Simple_repeat 2 78 0 317 387 53 18 chr21 28965416 28965700 -15941870 - L1 LINE L1 -1086 5762 5469 327 300 145 51 chr21 28965793 28966420 -15941150 - L1 LINE L1 -1556 5292 4607 2042 115 4 0 chr21 28967319 28967598 -15939972 - AluSq SINE Alu -33 280 1 195 325 92 25 chr21 28967625 28967745 -15939825 + MIR SINE MIR 32 159 -103 224 313 71 18 chr21 28968345 28968457 -15939113 - MIR SINE MIR -80 182 65 1271 150 0 0 chr21 28969111 28969304 -15938266 - AluJb SINE Alu 0 312 120 227 273 50 61 chr21 28969336 28969435 -15938135 - L3 LINE CR1 -206 1371 1274 406 321 158 20 chr21 28969476 28969722 -15937848 + L1ME3A LINE L1 4793 5072 -1074 491 272 103 29 chr21 28969841 28970428 -15937142 + L1ME3A LINE L1 5244 5885 -285 21 0 0 0 chr21 28970464 28970485 -15937085 + AT_rich Low_complexity Low_complexity 1 21 0 226 364 0 0 chr21 28972549 28972725 -15934845 + (CCCCAG)n Simple_repeat Simple_repeat 5 180 0 2208 245 23 69 chr21 28972747 28973575 -15933995 - L1 LINE L1 -3147 3701 2912 273 151 0 0 chr21 28973579 28973632 -15933938 + (TA)n Simple_repeat Simple_repeat 2 54 0 291 270 0 0 chr21 28973636 28973725 -15933845 + L1MC4 LINE L1 6614 6702 -1340 237 241 46 0 chr21 28973669 28973756 -15933814 - L1MC4 LINE L1 -1338 6704 6614 * 242 221 0 42 chr21 28973749 28973844 -15933726 + L1MC4 LINE L1 6613 6703 -1339 304 267 0 23 chr21 28973844 28973930 -15933640 + L1MC4 LINE L1 6620 6703 -1339 300 218 45 91 chr21 28973952 28974062 -15933508 - L1 LINE L1 -4046 2803 2699 425 334 82 39 chr21 28974373 28974678 -15932892 - L3 LINE CR1 -1 1576 1259 262 310 68 16 chr21 28975029 28975298 -15932272 + L1ME LINE L1 5180 5469 -652 28 29 0 0 chr21 28975576 28975611 -15931959 + AT_rich Low_complexity Low_complexity 1 35 0 257 305 13 13 chr21 28977158 28977312 -15930258 + (CCCCAG)n Simple_repeat Simple_repeat 1 154 0 529 291 6 6 chr21 28978364 28978522 -15929048 - LTR41 LTR ERVL -615 158 1 304 344 41 8 chr21 28978564 28978686 -15928884 + MIR SINE MIR 31 156 -106 21 0 0 0 chr21 28978689 28978710 -15928860 + AT_rich Low_complexity Low_complexity 1 21 0 2753 198 8 11 chr21 28979112 28979719 -15927851 + L1 LINE L1 4759 5363 -783 4570 182 29 13 chr21 28979805 28980738 -15926832 - L1MA9 LINE L1 -1 6311 5364 252 217 43 14 chr21 28980752 28980821 -15926749 - MIR SINE MIR -72 136 66 1392 212 90 40 chr21 28981159 28981536 -15926034 + MSTD LTR MaLR 1 396 0 1049 190 58 16 chr21 28981767 28982078 -15925492 - MER33 DNA MER1_type 0 324 1 191 326 82 94 chr21 28982191 28982519 -15925051 + L2 LINE L2 2949 3272 0 387 0 0 0 chr21 28982754 28982797 -15924773 + (CA)n Simple_repeat Simple_repeat 2 44 0 190 325 74 61 chr21 28983592 28983730 -15923840 + L2 LINE L2 3019 3154 -159 230 0 0 32 chr21 28983730 28983761 -15923809 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2183 95 0 3 chr21 28983763 28984046 -15923524 - AluSq SINE Alu -31 282 1 190 325 74 61 chr21 28984046 28984135 -15923435 + L2 LINE L2 3154 3252 -61 1698 124 62 8 chr21 28984357 28984616 -15922954 - AluSx SINE Alu -16 296 24 201 154 77 0 chr21 28985649 28985688 -15921882 - L2 LINE L2 -11 3302 3261 230 155 52 35 chr21 28987545 28987603 -15919967 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 610 238 28 61 chr21 28988845 28989026 -15918544 + MER20 DNA MER1_type 1 175 -44 313 258 113 38 chr21 28989382 28989541 -15918029 - L3 LINE CR1 -98 1479 1309 220 291 114 0 chr21 28989808 28989887 -15917683 + L2 LINE L2 3204 3291 -22 245 50 0 25 chr21 28990534 28990574 -15916996 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 309 302 40 67 chr21 28990893 28991042 -15916528 - MIR SINE MIR -50 212 68 271 294 43 0 chr21 28991211 28991303 -15916267 + L2 LINE L2 2965 3060 -212 552 56 0 0 chr21 28991464 28991536 -15916034 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 265 320 60 10 chr21 28992006 28992106 -15915464 - L3 LINE CR1 -243 1334 1230 227 306 118 0 chr21 28993544 28993629 -15913941 - MIR SINE MIR -148 114 20 204 40 0 0 chr21 28994118 28994143 -15913427 + (A)n Simple_repeat Simple_repeat 1 25 0 719 280 106 32 chr21 28994341 28994652 -15912918 + MER45C DNA AcHobo 1 376 -577 426 245 7 6 chr21 28994657 28994800 -15912770 + MER45C DNA AcHobo 729 952 -1 252 401 43 11 chr21 28994912 28995189 -15912381 + L2 LINE L2 1715 2000 -1314 28 29 0 0 chr21 28995354 28995389 -15912181 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr21 28995804 28995831 -15911739 + AT_rich Low_complexity Low_complexity 1 27 0 275 54 89 27 chr21 28995903 28996015 -15911555 + (TA)n Simple_repeat Simple_repeat 2 120 0 247 276 28 90 chr21 28996024 28996169 -15911401 - MIR SINE MIR -58 204 69 203 307 23 45 chr21 28996212 28996300 -15911270 - L3 LINE CR1 -87 1490 1405 584 273 8 0 chr21 28996915 28997036 -15910534 + MER63A DNA MER1_type 89 210 0 858 237 116 0 chr21 28997050 28997265 -15910305 + MIR SINE MIR 2 241 -21 21 0 0 0 chr21 28997275 28997296 -15910274 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 28997398 28997419 -15910151 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr21 28997507 28997540 -15910030 + (CA)n Simple_repeat Simple_repeat 2 34 0 358 345 69 63 chr21 28997749 28997946 -15909624 - L3 LINE CR1 -1 1576 1374 2021 106 3 7 chr21 28997946 28998269 -15909301 - AluY SINE Alu 0 322 1 358 345 69 63 chr21 28998269 28998389 -15909181 - L3 LINE CR1 -203 1374 1256 2182 103 7 3 chr21 28998982 28999283 -15908287 - AluSp SINE Alu -11 302 1 597 274 0 25 chr21 28999378 28999535 -15908035 + MLT1E LTR MaLR 9 161 -432 186 43 0 0 chr21 28999874 28999897 -15907673 + (AATTG)n Simple_repeat Simple_repeat 3 25 0 2561 40 0 46 chr21 29000951 29001277 -15906293 - AluY SINE Alu 0 311 1 272 342 17 34 chr21 29002265 29002382 -15905188 - L2 LINE L2 -4 3268 3154 229 301 12 36 chr21 29003876 29003959 -15903611 - MIR SINE MIR -73 189 109 30 0 0 0 chr21 29004072 29004102 -15903468 + AT_rich Low_complexity Low_complexity 1 30 0 2583 197 54 13 chr21 29004328 29005232 -15902338 + L1MB8 LINE L1 4890 5837 -341 1150 224 141 0 chr21 29006939 29007194 -15900376 + AluJo SINE Alu 1 291 -11 561 222 142 23 chr21 29007635 29007811 -15899759 + MIR SINE MIR 29 225 -37 211 369 0 0 chr21 29009788 29009872 -15897698 - MIR SINE MIR -109 153 70 217 259 339 0 chr21 29010054 29010166 -15897404 - L2 LINE L2 0 3313 3164 1678 288 155 32 chr21 29010370 29010618 -15896952 + L2 LINE L2 2123 2339 -974 2032 108 42 3 chr21 29010618 29010906 -15896664 - AluSx SINE Alu -13 299 1 1678 288 155 32 chr21 29010906 29011710 -15895860 + L2 LINE L2 2339 3313 0 1949 93 12 0 chr21 29011878 29012135 -15895435 + AluSc SINE Alu 45 304 -5 377 273 141 15 chr21 29012751 29012949 -15894621 + Charlie2b DNA MER1_type 812 1034 -1748 4597 190 22 16 chr21 29012977 29014447 -15893123 - L1MA9 LINE L1 -39 6337 4852 621 232 77 52 chr21 29014446 29014640 -15892930 - L1MA9 LINE L1 -5938 203 5 * 345 292 22 15 chr21 29014646 29014783 -15892787 + Charlie2b DNA MER1_type 1035 1172 -1610 2636 196 36 24 chr21 29015148 29015605 -15891965 - MER74A LTR ERVL 0 558 91 2495 50 33 0 chr21 29015605 29015904 -15891666 + AluY SINE Alu 1 309 -2 2636 196 36 24 chr21 29015904 29015997 -15891573 - MER74A LTR ERVL -467 91 1 21 36 0 0 chr21 29016796 29016824 -15890746 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr21 29016927 29016962 -15890608 + AT_rich Low_complexity Low_complexity 1 35 0 297 318 139 0 chr21 29017003 29017132 -15890438 + MER5A DNA MER1_type 43 189 0 2517 43 0 10 chr21 29017323 29017626 -15889944 + AluY SINE Alu 3 302 -9 1394 258 129 48 chr21 29017866 29018364 -15889206 + Charlie2b DNA MER1_type 1215 1671 -1191 1653 223 8 16 chr21 29018364 29018732 -15888838 - MLT1A1 LTR MaLR 0 365 1 1394 258 129 48 chr21 29018732 29019187 -15888383 + Charlie2b DNA MER1_type 1671 2245 -537 226 206 44 29 chr21 29019202 29019270 -15888300 - HsTC2 DNA Tc2 0 1898 1830 677 232 26 10 chr21 29019382 29019576 -15887994 + L1MA9 LINE L1 6078 6274 -38 294 244 13 0 chr21 29019608 29019686 -15887884 - HsTC2 DNA Tc2 -1819 79 1 1289 195 83 56 chr21 29019702 29020076 -15887494 + MLT1B LTR MaLR 1 384 -6 519 216 119 31 chr21 29020132 29020451 -15887119 + Charlie2b DNA MER1_type 2288 2634 -148 535 154 22 0 chr21 29020451 29020542 -15887028 + MSTA LTR MaLR 1 93 -335 * 766 215 108 14 chr21 29020535 29020749 -15886821 + MSTA LTR MaLR 194 427 -1 288 283 10 0 chr21 29020749 29020844 -15886726 + Charlie2b DNA MER1_type 2629 2724 -58 346 294 77 74 chr21 29020912 29021238 -15886332 + MLT1I LTR MaLR 83 409 0 23 0 0 0 chr21 29021878 29021901 -15885669 + AT_rich Low_complexity Low_complexity 1 23 0 4793 156 8 27 chr21 29024716 29024964 -15882606 + L1PB3 LINE L1 4979 5230 -924 541 101 0 13 chr21 29024964 29025043 -15882527 - MADE1 DNA Mariner -2 78 1 4793 156 8 27 chr21 29025043 29025890 -15881680 + L1PB3 LINE L1 5230 6050 -104 475 188 0 0 chr21 29025896 29025981 -15881589 - L1P5 LINE L1 -357 5797 5713 689 127 8 8 chr21 29025986 29026104 -15881466 + L1PB3 LINE L1 6036 6153 -1 657 283 50 12 chr21 29026727 29026967 -15880603 + HAL1 LINE L1 1471 1719 -788 2052 113 3 3 chr21 29027033 29027342 -15880228 + AluSx SINE Alu 1 309 0 283 273 91 29 chr21 29027672 29027881 -15879689 + HAL1 LINE L1 2172 2393 -114 22 56 0 0 chr21 29027956 29027992 -15879578 + AT_rich Low_complexity Low_complexity 1 36 0 333 324 66 15 chr21 29028151 29028410 -15879160 + L1ME4a LINE L1 5595 5866 -255 24 53 0 0 chr21 29028429 29028467 -15879103 + AT_rich Low_complexity Low_complexity 1 38 0 1783 155 13 25 chr21 29029066 29029382 -15878188 + AluJo SINE Alu 1 312 0 377 328 21 47 chr21 29029422 29029614 -15877956 + MER5A DNA MER1_type 1 187 -2 271 261 0 0 chr21 29029798 29029863 -15877707 + L1MDa LINE L1 1621 1685 -4855 * 335 263 94 75 chr21 29029846 29030104 -15877466 + L1MD2 LINE L1 5883 6112 -52 21 36 0 0 chr21 29030675 29030703 -15876867 + AT_rich Low_complexity Low_complexity 1 28 0 1607 216 0 0 chr21 29030926 29031256 -15876314 - AluJo SINE Alu 0 331 2 1720 185 99 31 chr21 29031272 29031688 -15875882 - L1MA9 LINE L1 -39 6273 5830 25 51 0 0 chr21 29033098 29033137 -15874433 + AT_rich Low_complexity Low_complexity 1 39 0 2236 73 0 4 chr21 29033186 29033460 -15874110 - AluY SINE Alu -15 296 24 7030 53 5 1 chr21 29033985 29035151 -15872419 + L1PA6 LINE L1 4976 6144 -10 342 0 0 0 chr21 29035152 29035190 -15872380 + (CA)n Simple_repeat Simple_repeat 1 38 0 2185 111 0 0 chr21 29035211 29035509 -15872061 - AluY SINE Alu -13 298 1 323 242 48 97 chr21 29036235 29036400 -15871170 - MER5A DNA MER1_type -29 160 4 28 29 0 0 chr21 29036716 29036751 -15870819 + AT_rich Low_complexity Low_complexity 1 35 0 483 303 0 51 chr21 29038623 29038801 -15868769 + MIR SINE MIR 7 175 -87 202 351 43 11 chr21 29040863 29040957 -15866613 + MER5B DNA MER1_type 31 127 -51 23 33 0 0 chr21 29040975 29041005 -15866565 + AT_rich Low_complexity Low_complexity 1 30 0 605 337 5 16 chr21 29041433 29041623 -15865947 + MER5A DNA MER1_type 1 188 -1 23 54 0 0 chr21 29044202 29044239 -15863331 + AT_rich Low_complexity Low_complexity 1 37 0 25 23 0 23 chr21 29044771 29044800 -15862770 + AT_rich Low_complexity Low_complexity 1 30 -12 2234 103 0 0 chr21 29044800 29045091 -15862479 - AluSx SINE Alu -21 291 1 25 23 0 23 chr21 29045091 29045104 -15862466 + AT_rich Low_complexity Low_complexity 30 42 0 622 139 0 0 chr21 29045104 29045205 -15862365 - L1MA2 LINE L1 0 6304 6204 316 240 54 8 chr21 29045847 29045976 -15861594 - MER69 DNA AcHobo -8 2518 2384 5751 206 62 8 chr21 29045980 29046419 -15861151 + L1 LINE L1 2469 2883 -3263 432 0 0 0 chr21 29046419 29046467 -15861103 + (CA)n Simple_repeat Simple_repeat 1 48 0 5751 206 62 8 chr21 29046467 29047482 -15860088 + L1 LINE L1 2883 4001 -2145 435 321 43 89 chr21 29047627 29048022 -15859548 + L2 LINE L2 2896 3272 0 289 328 104 0 chr21 29048031 29048165 -15859405 + MIR3 SINE MIR 54 201 -7 513 306 11 22 chr21 29048383 29048563 -15859007 - MER5A DNA MER1_type -5 184 7 1259 128 5 29 chr21 29048720 29048924 -15858646 + MER20 DNA MER1_type 18 216 -3 24 0 0 0 chr21 29048970 29048994 -15858576 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr21 29049716 29049738 -15857832 + AT_rich Low_complexity Low_complexity 1 22 0 314 250 68 11 chr21 29050101 29050189 -15857381 - L3b LINE CR1 -197 1386 1294 324 295 216 0 chr21 29050376 29050515 -15857055 - MER5A DNA MER1_type -5 184 16 1854 157 0 17 chr21 29050515 29050691 -15856879 - AluJb SINE Alu -23 289 118 246 81 0 0 chr21 29050691 29050728 -15856842 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1854 157 0 17 chr21 29050728 29050845 -15856725 - AluJb SINE Alu -194 118 1 2151 126 0 0 chr21 29050930 29051224 -15856346 + AluSx SINE Alu 1 294 -18 604 274 106 21 chr21 29051412 29051649 -15855921 + MER90 LTR ERV1 87 343 -232 484 201 166 79 chr21 29051652 29051930 -15855640 + MLT1D LTR MaLR 1 302 -203 188 254 36 0 chr21 29051981 29052036 -15855534 - L2 LINE L2 -536 2778 2722 183 227 23 0 chr21 29052116 29052160 -15855410 - MIR SINE MIR -65 143 99 1249 180 0 0 chr21 29052173 29052384 -15855186 + MLT1D LTR MaLR 295 505 0 835 297 5 5 chr21 29052384 29052600 -15854970 + MER90 LTR ERV1 399 614 0 297 364 91 6 chr21 29052875 29053040 -15854530 - L2 LINE L2 -561 2753 2575 2179 148 85 10 chr21 29053178 29053576 -15853994 + MSTA LTR MaLR 1 428 0 646 298 14 9 chr21 29053689 29053907 -15853663 + MER90 LTR ERV1 396 614 0 3040 216 80 54 chr21 29055085 29055131 -15852439 + L1MC4 LINE L1 6735 6778 -1264 2398 78 3 0 chr21 29055131 29055425 -15852145 - AluSc SINE Alu -14 295 1 2479 60 0 10 chr21 29055431 29055733 -15851837 - AluY SINE Alu -12 299 1 3040 216 80 54 chr21 29055733 29056712 -15850858 + L1MC4 LINE L1 6782 7794 -248 314 265 48 69 chr21 29056732 29056768 -15850802 + L1MC4 LINE L1 7858 7893 -149 693 89 24 0 chr21 29056768 29056892 -15850678 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 314 265 48 69 chr21 29056892 29057044 -15850526 + L1MC4 LINE L1 7893 8042 0 243 272 142 59 chr21 29057105 29057274 -15850296 - L3 LINE CR1 0 1577 1395 184 336 49 49 chr21 29057515 29057637 -15849933 + L2 LINE L2 3192 3313 0 4813 23 0 0 chr21 29057962 29058522 -15849048 - L1PA3 LINE L1 0 6155 5596 23 54 0 0 chr21 29059003 29059040 -15848530 + AT_rich Low_complexity Low_complexity 1 37 0 619 200 66 36 chr21 29060363 29060532 -15847038 + L1MB5 LINE L1 6012 6184 0 261 324 122 43 chr21 29061564 29061703 -15845867 - MER5A DNA MER1_type -4 185 36 783 265 76 44 chr21 29062150 29062471 -15845099 - MIR SINE MIR 0 262 2 576 319 78 16 chr21 29062603 29062973 -15844597 - MLT1I LTR MaLR -15 394 2 853 140 56 34 chr21 29064062 29064240 -15843330 - L1MB7 LINE L1 -2 6182 6001 2213 74 0 7 chr21 29064345 29064663 -15842907 - AluSx SINE Alu 0 316 1 1251 201 36 0 chr21 29064722 29065011 -15842559 - L1MB7 LINE L1 -222 5962 5660 620 324 114 21 chr21 29065013 29065479 -15842091 + L2 LINE L2 2354 2862 -452 468 252 50 34 chr21 29065519 29065638 -15841932 + L2 LINE L2 3180 3300 -13 320 0 0 24 chr21 29065655 29065696 -15841874 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 949 106 30 0 chr21 29065974 29066106 -15841464 + AluSq/x SINE Alu 1 136 -176 2438 57 10 3 chr21 29067278 29067579 -15839991 - AluY SINE Alu -8 303 1 297 280 97 11 chr21 29067611 29067704 -15839866 - MIR3 SINE MIR -16 192 92 1492 253 102 55 chr21 29067831 29068397 -15839173 + MLT1E LTR MaLR 1 593 0 254 278 0 0 chr21 29068995 29069067 -15838503 + L1ME LINE L1 5800 5871 -250 251 307 11 0 chr21 29069246 29069334 -15838236 - L2 LINE L2 -189 3083 2995 8783 27 0 0 chr21 29070075 29071172 -15836398 - L1P LINE L1 -3214 2932 1836 6977 11 0 1 chr21 29071171 29072000 -15835570 + L1HS LINE L1 5328 6155 0 * 259 107 0 53 chr21 29072008 29072042 -15835528 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 -36 2055 128 0 0 chr21 29072042 29072324 -15835246 - AluSq SINE Alu -31 282 1 259 107 0 53 chr21 29072324 29072364 -15835206 + (CAAAAA)n Simple_repeat Simple_repeat 36 72 0 350 332 108 36 chr21 29072731 29073008 -15834562 + L1MC4a LINE L1 6167 6463 -1345 670 256 38 80 chr21 29073123 29073498 -15834072 + L1MC4 LINE L1 6658 7024 -974 29 0 0 0 chr21 29073499 29073528 -15834042 + AT_rich Low_complexity Low_complexity 1 29 0 476 95 0 14 chr21 29073663 29073737 -15833833 - MADE1 DNA Mariner -5 75 3 810 224 0 0 chr21 29073906 29074058 -15833512 + FRAM SINE Alu 1 151 -25 2138 110 7 0 chr21 29074469 29074759 -15832811 + AluSg SINE Alu 1 292 -18 2143 101 24 7 chr21 29077279 29077576 -15829994 + AluSp SINE Alu 1 302 -11 28 71 0 0 chr21 29078934 29078990 -15828580 + AT_rich Low_complexity Low_complexity 1 56 0 384 336 148 8 chr21 29079164 29079420 -15828150 + L3 LINE CR1 982 1273 -304 306 288 64 72 chr21 29079507 29079632 -15827938 + L3 LINE CR1 1453 1576 -1 282 116 0 0 chr21 29079838 29079881 -15827689 + (CA)n Simple_repeat Simple_repeat 1 43 0 874 142 6 18 chr21 29079987 29080156 -15827414 - L1 LINE L1 -1359 4787 4621 21 0 0 0 chr21 29081053 29081074 -15826496 + AT_rich Low_complexity Low_complexity 1 21 0 211 162 27 81 chr21 29081115 29081189 -15826381 + A-rich Low_complexity Low_complexity 5 74 0 231 88 0 0 chr21 29081271 29081305 -15826265 + (TA)n Simple_repeat Simple_repeat 2 35 0 2293 94 0 7 chr21 29081305 29081604 -15825966 - AluSc SINE Alu -12 297 1 2134 79 11 4 chr21 29082096 29082398 -15825172 - AluSc SINE Alu 0 304 1 210 208 19 19 chr21 29082439 29082492 -15825078 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 203 173 19 0 chr21 29082563 29082615 -15824955 + (TA)n Simple_repeat Simple_repeat 2 54 0 7158 51 1 1 chr21 29083269 29084512 -15823058 + L1PA5 LINE L1 4909 6152 -2 204 40 0 0 chr21 29085790 29085815 -15821755 + (TATG)n Simple_repeat Simple_repeat 3 27 0 2277 122 0 0 chr21 29085900 29086211 -15821359 + AluSx SINE Alu 1 311 -1 739 246 61 26 chr21 29086622 29086850 -15820720 + MIR SINE MIR 1 236 -26 275 140 0 0 chr21 29087048 29087098 -15820472 + L1PA15 LINE L1 6000 6049 -116 605 110 8 102 chr21 29087106 29087233 -15820337 + MLT2B1 LTR ERVL 401 515 -5 711 177 7 21 chr21 29087237 29087378 -15820192 + MLT-int LTR MaLR 1 139 -1596 2661 208 83 88 chr21 29087388 29088287 -15819283 - MER21A LTR ERV1 -36 895 1 2238 218 35 8 chr21 29088287 29088864 -15818706 + MLT-int LTR MaLR 127 728 -643 276 246 15 0 chr21 29088952 29089017 -15818553 + MLT-int LTR MaLR 679 744 -991 2166 230 57 13 chr21 29089135 29089679 -15817891 + MLT1A1-int LTR MaLR 1166 1733 -2 1972 166 11 8 chr21 29089694 29090049 -15817521 + MLT1A1 LTR MaLR 10 365 0 350 295 60 22 chr21 29090067 29090382 -15817188 + HAL1 LINE L1 995 1321 -1186 1917 237 34 56 chr21 29090471 29091065 -15816505 - MLT1G LTR MaLR 0 590 10 392 284 56 44 chr21 29091080 29091418 -15816152 + HAL1 LINE L1 1395 1736 -771 886 208 4 93 chr21 29091432 29091701 -15815869 - MSTD LTR MaLR 0 396 152 * 1098 110 40 6 chr21 29091698 29091871 -15815699 - MER30 DNA MER1_type -51 179 1 454 127 45 100 chr21 29091908 29092049 -15815521 + LTR45B LTR ERV1 344 518 -7 324 70 0 0 chr21 29092701 29092744 -15814826 + (TTC)n Simple_repeat Simple_repeat 1 43 0 2416 97 3 0 chr21 29094214 29094525 -15813045 - AluSp SINE Alu -1 312 1 1165 246 61 24 chr21 29094772 29095183 -15812387 + MLT1C LTR MaLR 42 467 0 369 240 16 23 chr21 29095382 29095511 -15812059 - L1MCa LINE L1 -1339 6983 1995 183 205 0 0 chr21 29095511 29095550 -15812020 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 340 277 27 54 chr21 29095607 29095755 -15811815 - MIR SINE MIR -50 212 69 369 0 0 0 chr21 29096303 29096344 -15811226 + (CA)n Simple_repeat Simple_repeat 2 42 0 244 83 42 0 chr21 29096620 29096668 -15810902 + LTR66 LTR ERVL 395 444 -166 25 31 0 0 chr21 29096675 29096707 -15810863 + AT_rich Low_complexity Low_complexity 1 32 0 260 290 20 0 chr21 29096709 29096809 -15810761 - MER103 DNA DNA -64 102 1 1538 116 9 9 chr21 29097669 29097894 -15809676 + AluSq SINE Alu 82 306 -7 227 347 27 44 chr21 29098526 29098751 -15808819 + L2 LINE L2 2285 2505 -809 1627 167 34 11 chr21 29098917 29099186 -15808384 + AluJb SINE Alu 5 279 -33 234 230 0 23 chr21 29099242 29099329 -15808241 - L1MC4 LINE L1 -1344 6698 6614 270 0 0 0 chr21 29099539 29099569 -15808001 + (TA)n Simple_repeat Simple_repeat 1 30 0 306 148 0 0 chr21 29101028 29101082 -15806488 + (CA)n Simple_repeat Simple_repeat 2 55 0 329 139 87 52 chr21 29101257 29101372 -15806198 + MER53 DNA DNA 9 127 -62 264 30 0 0 chr21 29101375 29101408 -15806162 + (A)n Simple_repeat Simple_repeat 1 33 0 6017 48 0 0 chr21 29101776 29102509 -15805061 - L1PA6 LINE L1 -5 6149 5417 22 0 0 0 chr21 29102585 29102607 -15804963 + AT_rich Low_complexity Low_complexity 1 22 0 2269 102 3 0 chr21 29102829 29103123 -15804447 - AluSg SINE Alu -15 295 1 334 246 0 0 chr21 29103163 29103232 -15804338 + MIR3 SINE MIR 126 194 -14 581 305 114 30 chr21 29103742 29104103 -15803467 + MLT1J1 LTR MaLR 3 393 -53 299 214 134 80 chr21 29104250 29104451 -15803119 - L1ME LINE L1 -303 5818 5607 231 289 117 16 chr21 29104570 29104698 -15802872 - MIR SINE MIR -102 160 20 462 97 0 0 chr21 29105066 29105128 -15802442 + MLT1B LTR MaLR 329 390 0 714 164 0 0 chr21 29105718 29105828 -15801742 + AluJb SINE Alu 190 299 -13 2257 93 10 29 chr21 29106083 29106393 -15801177 + AluSx SINE Alu 1 304 -8 309 344 0 11 chr21 29107019 29107112 -15800458 + L2 LINE L2 3132 3223 -49 2038 81 4 8 chr21 29107136 29107444 -15800126 - AluSc SINE Alu 0 328 22 194 217 0 17 chr21 29107538 29107598 -15799972 + GA-rich Low_complexity Low_complexity 3 61 0 637 152 99 20 chr21 29107642 29107793 -15799777 + L1MB4 LINE L1 6018 6180 0 295 207 163 74 chr21 29108190 29108325 -15799245 - MIR SINE MIR -57 205 59 2183 93 7 0 chr21 29110007 29110296 -15797274 + AluSx SINE Alu 21 311 -1 1555 137 4 22 chr21 29110490 29110768 -15796802 + L1PA16 LINE L1 5894 6166 0 324 300 85 80 chr21 29113645 29113695 -15793875 - MIR SINE MIR -18 244 196 2395 71 3 10 chr21 29113695 29114005 -15793565 + AluY SINE Alu 1 308 -3 324 300 85 80 chr21 29114005 29114154 -15793416 - MIR SINE MIR -66 196 44 2080 147 36 28 chr21 29116876 29117237 -15790333 + THE1B LTR MaLR 1 364 0 284 283 175 12 chr21 29117261 29117427 -15790143 + LTR16C LTR ERVL 299 491 0 21 36 0 0 chr21 29117899 29117927 -15789643 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr21 29118005 29118059 -15789511 + AT_rich Low_complexity Low_complexity 1 54 0 225 0 0 0 chr21 29118257 29118282 -15789288 + (CA)n Simple_repeat Simple_repeat 1 25 0 618 259 135 10 chr21 29118302 29118591 -15788979 - MLT1G LTR MaLR -2 588 151 271 131 8 57 chr21 29118598 29118720 -15788850 + (TA)n Simple_repeat Simple_repeat 2 117 0 198 169 34 0 chr21 29118749 29118838 -15788732 + (TA)n Simple_repeat Simple_repeat 2 93 0 536 243 119 17 chr21 29118841 29119018 -15788552 - MLT1G1 LTR MaLR -388 207 13 22 0 0 0 chr21 29120216 29120238 -15787332 + AT_rich Low_complexity Low_complexity 1 22 0 313 336 71 25 chr21 29121700 29121903 -15785667 + MIR SINE MIR 39 248 -14 1583 121 131 23 chr21 29122455 29122760 -15784810 - MER44D DNA MER2_type -1 608 1 2541 178 19 19 chr21 29123392 29123858 -15783712 + MER66B LTR ERV1 21 486 0 342 302 34 45 chr21 29125354 29125533 -15782037 - L1ME LINE L1 -691 5430 5254 22 35 0 0 chr21 29126301 29126330 -15781240 + AT_rich Low_complexity Low_complexity 1 29 0 2152 118 0 0 chr21 29126653 29126940 -15780630 - AluSq SINE Alu -13 300 14 2111 111 0 17 chr21 29127084 29127381 -15780189 + AluSx SINE Alu 1 292 -20 553 250 60 36 chr21 29127566 29127814 -15779756 + L1ME3A LINE L1 5709 5962 -208 2557 161 42 7 chr21 29130642 29131094 -15776476 - MER31A LTR ERV1 0 485 18 1041 295 109 22 chr21 29131268 29131773 -15775797 - MLT1H LTR MaLR 0 549 1 2580 156 60 114 chr21 29133745 29134475 -15773095 + LTR8 LTR ERV1 1 691 0 2745 274 83 62 chr21 29134579 29135791 -15771779 - L1ME1 LINE L1 -3 6232 5047 2451 77 0 0 chr21 29135791 29136091 -15771479 - AluY SINE Alu -6 305 6 2745 274 83 62 chr21 29136091 29138004 -15769566 - L1ME1 LINE L1 -1188 5047 2865 2923 125 47 9 chr21 29138004 29138541 -15769029 - L1MA7 LINE L1 -5 6286 5730 2745 274 83 62 chr21 29138541 29139413 -15768157 - L1ME1 LINE L1 -3370 2865 2013 591 300 45 47 chr21 29139613 29140079 -15767491 - L1ME1 LINE L1 -4666 1730 1266 230 266 18 97 chr21 29140848 29140961 -15766609 - L1ME1 LINE L1 -5954 251 148 200 401 15 0 chr21 29141273 29141405 -15766165 + L2 LINE L2 2214 2347 -967 2297 84 3 0 chr21 29141599 29141895 -15765675 - AluY SINE Alu -13 298 2 685 189 8 8 chr21 29142003 29142135 -15765435 - FLAM_A SINE Alu 0 133 2 2493 186 30 4 chr21 29142443 29142911 -15764659 + L1MCa LINE L1 47 526 -5900 489 286 24 51 chr21 29143359 29143614 -15763956 + L1MCa LINE L1 658 905 -5003 376 317 32 37 chr21 29143722 29144183 -15763387 + L1MCa LINE L1 1281 1739 -4868 358 217 136 27 chr21 29144183 29144356 -15763214 + L1M4 LINE L1 1603 1943 -4273 2066 142 24 19 chr21 29144496 29144869 -15762701 - THE1C LTR MaLR 0 375 1 245 254 0 0 chr21 29145469 29145528 -15762042 + L1M4 LINE L1 4618 4676 -1539 2300 86 13 0 chr21 29145604 29145906 -15761664 + AluSp SINE Alu 1 306 -7 1687 142 0 0 chr21 29146113 29146359 -15761211 + AluSc SINE Alu 1 246 -63 333 118 0 0 chr21 29146359 29146410 -15761160 + (A)n Simple_repeat Simple_repeat 1 51 0 200 196 20 20 chr21 29146454 29146505 -15761065 + L2 LINE L2 3263 3313 0 634 251 43 32 chr21 29147826 29148013 -15759557 + MER5A DNA MER1_type 1 189 0 1454 223 72 21 chr21 29148255 29148632 -15758938 - MSTD LTR MaLR 0 396 1 253 306 28 0 chr21 29148691 29148799 -15758771 + MLT1L LTR MaLR 472 582 -33 321 267 76 38 chr21 29149221 29149326 -15758244 + MER81 DNA DNA 2 110 -4 687 282 95 17 chr21 29150985 29151226 -15756344 - MIR SINE MIR -2 260 1 388 354 19 0 chr21 29152065 29152223 -15755347 + MIR3 SINE MIR 16 176 -32 742 200 79 0 chr21 29152731 29152871 -15754699 - MER96 DNA MER1_type? 0 175 25 376 263 101 0 chr21 29152869 29152968 -15754602 + MER96 DNA MER1_type? 66 174 -1 * 2105 154 39 3 chr21 29153436 29153799 -15753771 - MLT1B LTR MaLR -14 376 1 1403 303 10 36 chr21 29155560 29156055 -15751515 + L1M2a LINE L1 11 492 -6676 4367 233 68 17 chr21 29156350 29157629 -15749941 + L1M2a LINE L1 1629 2961 -4207 1388 257 61 15 chr21 29157633 29158093 -15749477 + L1M1 LINE L1 3102 3624 -3941 6667 75 49 3 chr21 29158093 29159059 -15748511 + L1PA11 LINE L1 5167 6172 -2 1388 257 61 15 chr21 29159059 29159411 -15748159 + L1M1 LINE L1 3624 3958 -3607 837 148 15 0 chr21 29159412 29159547 -15748023 + AluSq/x SINE Alu 1 137 -176 317 253 46 23 chr21 29159592 29159679 -15747891 - L1MC4 LINE L1 -1339 6703 6615 234 206 0 0 chr21 29159680 29159748 -15747822 + (TA)n Simple_repeat Simple_repeat 2 69 0 359 264 23 0 chr21 29159758 29159845 -15747725 - L1MC4 LINE L1 -1339 6703 6615 222 156 0 0 chr21 29159846 29159891 -15747679 + (TA)n Simple_repeat Simple_repeat 1 45 0 3663 130 95 2 chr21 29159891 29160490 -15747080 - HSMAR2 DNA Mariner -66 1236 582 1545 22 21 0 chr21 29160490 29160726 -15746844 - L1PA3 LINE L1 -704 5451 5212 6600 11 1 0 chr21 29160726 29161420 -15746150 + L1PA3 LINE L1 5455 6155 0 3480 146 52 0 chr21 29161425 29161988 -15745582 - HSMAR2 DNA Mariner -707 595 4 6042 170 21 44 chr21 29162001 29162496 -15745074 + L1MA6 LINE L1 4016 4521 -1779 1175 189 5 0 chr21 29162496 29162692 -15744878 + AluSx SINE Alu 1 197 -115 6042 170 21 44 chr21 29162692 29164328 -15743242 + L1MA6 LINE L1 4521 6158 -142 2357 98 49 26 chr21 29164328 29164675 -15742895 + THE1A LTR MaLR 1 355 0 6042 170 21 44 chr21 29164675 29164810 -15742760 + L1MA6 LINE L1 6158 6294 -6 385 302 47 52 chr21 29164833 29164983 -15742587 + MLT1L LTR MaLR 403 553 -62 1040 177 39 0 chr21 29164983 29165164 -15742406 + MER5A DNA MER1_type 1 188 -1 385 302 47 52 chr21 29165164 29165225 -15742345 + MLT1L LTR MaLR 553 613 -2 243 276 0 0 chr21 29165312 29165370 -15742200 + MER52A LTR ERV1 1 58 -1697 3356 198 84 86 chr21 29166303 29167319 -15740251 + MER52A LTR ERV1 183 1196 -559 359 195 13 13 chr21 29167305 29167382 -15740188 + MER52A LTR ERV1 1679 1755 0 * 1025 190 9 41 chr21 29168245 29168389 -15739181 + MER20 DNA MER1_type 6 142 -77 2450 188 89 87 chr21 29168389 29169042 -15738528 + MLT1E1 LTR MaLR 1 654 0 1025 190 9 41 chr21 29169042 29169118 -15738452 + MER20 DNA MER1_type 142 219 0 312 270 40 92 chr21 29169630 29169782 -15737788 - MIR SINE MIR -109 153 10 343 241 46 138 chr21 29169813 29170008 -15737562 - MER5B DNA MER1_type 0 178 2 2355 103 0 0 chr21 29170465 29170766 -15736804 - AluSx SINE Alu -3 309 9 2322 100 3 3 chr21 29171161 29171470 -15736100 - AluSx SINE Alu -2 310 2 344 235 71 12 chr21 29171887 29171972 -15735598 - L1MC4 LINE L1 -1339 6703 6614 303 239 0 0 chr21 29171981 29172069 -15735501 + (TA)n Simple_repeat Simple_repeat 1 88 0 333 298 172 7 chr21 29172094 29172245 -15735325 - MIR SINE MIR -59 203 28 210 171 0 0 chr21 29172254 29172295 -15735275 + A-rich Low_complexity Low_complexity 1 41 0 293 244 109 17 chr21 29172736 29172804 -15734766 - MER119 DNA MER1_type -3 580 520 183 42 0 0 chr21 29172804 29172828 -15734742 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 293 244 109 17 chr21 29172828 29172878 -15734692 - MER119 DNA MER1_type -63 520 451 * 543 261 76 0 chr21 29172873 29172992 -15734578 - MER119 DNA MER1_type -449 134 7 354 241 0 0 chr21 29173357 29173465 -15734105 + (TA)n Simple_repeat Simple_repeat 1 108 0 234 291 175 19 chr21 29173568 29173671 -15733899 + L2 LINE L2 3154 3272 0 454 232 89 79 chr21 29174452 29174642 -15732928 + MLT1H LTR MaLR 99 290 -259 1310 152 9 14 chr21 29175036 29175247 -15732323 + AluJo SINE Alu 87 296 -16 310 339 16 8 chr21 29175601 29175728 -15731842 - MER5B DNA MER1_type -49 129 2 1241 163 4 52 chr21 29176454 29176687 -15730883 - AluJb SINE Alu -6 306 85 252 184 0 0 chr21 29176893 29176942 -15730628 + (TG)n Simple_repeat Simple_repeat 2 50 0 2851 110 23 94 chr21 29178357 29178739 -15728831 - L1MA4 LINE L1 -5 6295 5958 2017 113 0 32 chr21 29178739 29179023 -15728547 - AluSx SINE Alu -33 279 5 2851 110 23 94 chr21 29179023 29179159 -15728411 - L1MA4 LINE L1 -342 5958 5814 2558 80 0 0 chr21 29179166 29179477 -15728093 - AluSx SINE Alu 0 312 2 580 121 0 10 chr21 29179477 29179576 -15727994 + L1 LINE L1 4213 4310 -1836 * 5614 215 50 10 chr21 29179563 29180931 -15726639 + L1M4 LINE L1 3657 5078 -1068 2759 198 131 81 chr21 29180961 29181804 -15725766 - MER21A LTR ERV1 -19 912 28 527 53 13 0 chr21 29181804 29181879 -15725691 + (TA)n Simple_repeat Simple_repeat 2 77 0 25 0 0 0 chr21 29182006 29182031 -15725539 + AT_rich Low_complexity Low_complexity 1 25 0 498 292 94 25 chr21 29182102 29182304 -15725266 + MLT1J LTR MaLR 2 217 -294 316 174 65 43 chr21 29182833 29182925 -15724645 + L1M4 LINE L1 4559 4652 -1494 525 293 140 47 chr21 29183279 29183730 -15723840 - L1MEd LINE L1 -5502 617 125 961 160 116 0 chr21 29183741 29183922 -15723648 - MER57A LTR ERV1 -25 378 177 224 284 44 88 chr21 29184721 29184925 -15722645 + L2 LINE L2 2888 3082 -190 2264 131 27 24 chr21 29184972 29185346 -15722224 + THE1C LTR MaLR 1 375 0 199 222 0 19 chr21 29185452 29185506 -15722064 + L2 LINE L2 3261 3313 0 259 279 16 0 chr21 29186236 29186297 -15721273 + MER5A DNA MER1_type 128 189 0 2435 118 134 11 chr21 29186313 29186694 -15720876 + MSTA LTR MaLR 1 428 0 1208 266 44 56 chr21 29186818 29187319 -15720251 - MLT1L LTR MaLR 0 615 121 2127 133 7 0 chr21 29187471 29187765 -15719805 + AluSx SINE Alu 1 296 -16 465 19 0 0 chr21 29188229 29188283 -15719287 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr21 29188624 29188653 -15718917 + (TG)n Simple_repeat Simple_repeat 1 29 0 476 296 19 19 chr21 29188717 29188876 -15718694 + MIR SINE MIR 48 206 -56 2314 99 0 7 chr21 29189202 29189506 -15718064 + AluSg SINE Alu 1 302 -8 1430 212 136 68 chr21 29190388 29190550 -15717020 + MLT1D LTR MaLR 3 153 -352 2304 89 3 0 chr21 29190550 29190842 -15716728 + AluSp SINE Alu 1 293 -20 1430 212 136 68 chr21 29190842 29191150 -15716420 + MLT1D LTR MaLR 153 505 0 27 0 0 0 chr21 29191862 29191889 -15715681 + AT_rich Low_complexity Low_complexity 1 27 0 331 262 129 64 chr21 29192088 29192290 -15715280 - L1ME3A LINE L1 -1 6169 5955 618 284 79 11 chr21 29192295 29192620 -15714950 + MLT1I LTR MaLR 3 409 0 340 284 129 0 chr21 29192792 29192908 -15714662 - L1ME3A LINE L1 -326 5844 5714 294 320 19 10 chr21 29194168 29194271 -15713299 - MIR SINE MIR -136 126 23 461 302 41 17 chr21 29195299 29195471 -15712099 + MLT1H LTR MaLR 124 299 -250 377 259 25 147 chr21 29195681 29195830 -15711740 + MER5B DNA MER1_type 1 122 -56 355 123 0 0 chr21 29195830 29195887 -15711683 - L1MA6 LINE L1 -2 6298 6242 377 259 25 147 chr21 29195887 29195934 -15711636 + MER5B DNA MER1_type 122 173 -5 347 285 241 15 chr21 29196322 29196459 -15711111 + MER5A DNA MER1_type 21 188 -1 26 0 0 0 chr21 29196615 29196641 -15710929 + AT_rich Low_complexity Low_complexity 1 26 0 317 266 64 21 chr21 29196660 29196754 -15710816 - MER5B DNA MER1_type -78 100 3 232 277 8 50 chr21 29196968 29197087 -15710483 - LTR33A LTR ERVL 0 523 410 1094 236 148 18 chr21 29197259 29197590 -15709980 - MLT1A2 LTR MaLR 0 374 1 6455 112 4 19 chr21 29197641 29198557 -15709013 - MER4D LTR ERV1 0 903 1 1624 172 29 48 chr21 29198785 29199099 -15708471 + AluJb SINE Alu 1 308 -4 387 127 0 0 chr21 29199107 29199170 -15708400 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 681 250 134 9 chr21 29199192 29199408 -15708162 + MIR SINE MIR 9 251 -11 1607 229 14 22 chr21 29199471 29199837 -15707733 + MLT1A2 LTR MaLR 1 363 -11 278 324 29 29 chr21 29200083 29200222 -15707348 + MIR SINE MIR 21 159 -103 706 250 0 0 chr21 29200570 29200698 -15706872 - FLAM_A SINE Alu -5 128 1 287 274 159 0 chr21 29200811 29200924 -15706646 - MER91C DNA MER1_type -6 134 4 710 131 163 62 chr21 29201086 29201175 -15706395 + MER45A DNA AcHobo 1 80 -1501 2352 96 0 13 chr21 29201175 29201478 -15706092 - AluSg SINE Alu -11 299 1 710 131 163 62 chr21 29201478 29201548 -15706022 + MER45A DNA AcHobo 80 176 -2 323 185 37 49 chr21 29201671 29201752 -15705818 - MER5A DNA MER1_type -22 167 88 200 220 0 121 chr21 29201675 29201766 -15705804 + MER5A DNA MER1_type 38 117 -72 * 2099 129 7 0 chr21 29202550 29202845 -15704725 - AluSg SINE Alu -9 301 5 201 147 0 0 chr21 29202856 29202890 -15704680 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2291 109 0 0 chr21 29204845 29205148 -15702422 + AluSg SINE Alu 1 303 -7 647 279 39 0 chr21 29205157 29205336 -15702234 + MIR SINE MIR 73 258 -4 28 29 0 0 chr21 29205333 29205368 -15702202 + AT_rich Low_complexity Low_complexity 1 35 0 * 970 202 38 12 chr21 29205528 29205745 -15701825 - MER20 DNA MER1_type 0 219 6 1949 135 7 16 chr21 29206012 29206316 -15701254 + AluSx SINE Alu 1 301 -11 2282 164 21 35 chr21 29207532 29207966 -15699604 + MSTC LTR MaLR 1 428 0 2218 120 3 3 chr21 29207987 29208288 -15699282 - AluSx SINE Alu -11 301 1 237 326 42 14 chr21 29208974 29209118 -15698452 - MIR SINE MIR -59 203 56 784 283 0 52 chr21 29209807 29210076 -15697494 + MIR SINE MIR 7 261 -1 1356 199 64 10 chr21 29210191 29210502 -15697068 + MER58B DNA MER1_type 1 328 -13 437 275 173 41 chr21 29211991 29212938 -15694632 - L1MC4a LINE L1 -817 5329 4963 2485 72 0 3 chr21 29213111 29213417 -15694153 - AluY SINE Alu -6 305 1 877 292 115 43 chr21 29213444 29214349 -15693221 - L1MC4a LINE L1 -1521 4625 3656 2324 112 0 3 chr21 29216552 29216864 -15690706 - AluSx SINE Alu -1 311 1 1423 201 51 16 chr21 29216962 29217275 -15690295 + MER58B DNA MER1_type 2 325 -16 2280 93 0 3 chr21 29217420 29217709 -15689861 - AluSg SINE Alu -22 288 1 189 0 0 0 chr21 29217805 29217826 -15689744 + (A)n Simple_repeat Simple_repeat 1 21 0 190 258 15 45 chr21 29218273 29218339 -15689231 + L2 LINE L2 3206 3269 -3 365 271 8 16 chr21 29219244 29219366 -15688204 - LTR67 LTR ERVL -9 548 428 22 0 0 0 chr21 29221633 29221655 -15685915 + AT_rich Low_complexity Low_complexity 1 22 0 2067 81 62 11 chr21 29221791 29222064 -15685506 - AluSx SINE Alu -25 287 1 240 219 17 84 chr21 29222645 29222764 -15684806 - L1ME4a LINE L1 -71 6050 5940 366 278 56 35 chr21 29222832 29223030 -15684540 - L1ME4a LINE L1 -189 5932 5731 404 190 0 30 chr21 29223363 29223463 -15684107 + (TG)n Simple_repeat Simple_repeat 2 98 0 210 37 0 0 chr21 29223475 29223502 -15684068 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr21 29223576 29223605 -15683965 + AT_rich Low_complexity Low_complexity 1 29 0 269 307 6 28 chr21 29223748 29223927 -15683643 + (TA)n Simple_repeat Simple_repeat 1 175 0 264 305 14 21 chr21 29223859 29224000 -15683570 + (TCTA)n Simple_repeat Simple_repeat 2 141 0 * 234 303 0 32 chr21 29224038 29224193 -15683377 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 * 255 310 5 27 chr21 29224093 29224277 -15683293 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 289 275 22 34 chr21 29224149 29224327 -15683243 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 321 259 129 34 chr21 29225280 29225427 -15682143 + MER5A DNA MER1_type 26 186 -3 628 220 89 24 chr21 29225441 29225609 -15681961 + MER5A DNA MER1_type 7 185 -4 621 197 0 0 chr21 29227185 29227302 -15680268 + L1MC3 LINE L1 6899 7015 -770 1317 234 139 26 chr21 29227302 29227754 -15679816 - MLT1D LTR MaLR 0 505 3 361 187 22 44 chr21 29227772 29227863 -15679707 + L1MC3 LINE L1 7010 7098 -687 286 284 11 11 chr21 29227864 29227952 -15679618 + MLT1F1 LTR MaLR 37 124 -443 1973 202 78 52 chr21 29227959 29228500 -15679070 + L1MC3 LINE L1 7192 7750 -35 2115 116 3 3 chr21 29228500 29228801 -15678769 + AluSq SINE Alu 1 301 -12 1973 202 78 52 chr21 29228801 29228837 -15678733 + L1MC3 LINE L1 7750 7784 -1 800 223 127 15 chr21 29228883 29229080 -15678490 - MER20 DNA MER1_type 0 219 1 506 230 77 71 chr21 29229120 29229212 -15678358 + MIR SINE MIR 40 130 -132 306 50 0 0 chr21 29229212 29229252 -15678318 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1936 139 0 0 chr21 29229252 29229532 -15678038 - AluSx SINE Alu -32 280 1 506 230 77 71 chr21 29229532 29229634 -15677936 + MIR SINE MIR 129 236 -26 1547 132 62 52 chr21 29231156 29231445 -15676125 + AluSx SINE Alu 1 292 -20 232 282 99 8 chr21 29232326 29232457 -15675113 - MER104 DNA Tc2 -4 176 34 22 0 0 0 chr21 29232799 29232821 -15674749 + AT_rich Low_complexity Low_complexity 1 22 0 217 325 127 26 chr21 29233026 29233235 -15674335 + MIR SINE MIR 11 237 -25 184 311 16 33 chr21 29234925 29234986 -15672584 + L3b LINE CR1 1489 1548 -35 728 249 42 46 chr21 29235543 29235804 -15671766 - MIR SINE MIR 0 262 3 305 291 23 12 chr21 29235983 29236069 -15671501 - MIR3 SINE MIR -31 177 91 269 300 12 0 chr21 29236178 29236258 -15671312 + MIR3 SINE MIR 122 202 -6 941 159 22 95 chr21 29237192 29237290 -15670280 - MER20 DNA MER1_type -4 215 111 2924 77 14 11 chr21 29237290 29237653 -15669917 - THE1B LTR MaLR 0 364 1 941 159 22 95 chr21 29237653 29237786 -15669784 - MER20 DNA MER1_type -108 111 1 2984 147 17 23 chr21 29238430 29238900 -15668670 + MLT1C LTR MaLR 1 467 0 2532 65 0 13 chr21 29239262 29239569 -15668001 - AluY SINE Alu -7 304 2 1657 163 17 17 chr21 29240188 29240476 -15667094 + AluJo SINE Alu 1 288 -24 474 146 0 0 chr21 29240476 29240558 -15667012 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 235 227 23 0 chr21 29241105 29241149 -15666421 + MER2 DNA MER2_type 1 45 -300 2110 101 10 14 chr21 29241209 29241506 -15666064 + AluSc SINE Alu 1 296 -13 932 101 7 7 chr21 29241507 29241645 -15665925 + MER2 DNA MER2_type 73 210 -135 1290 179 30 27 chr21 29241672 29241935 -15665635 - AluJo SINE Alu -6 306 43 546 272 88 53 chr21 29242093 29242545 -15665025 + L1MDa LINE L1 1262 1729 -4811 476 301 93 68 chr21 29242765 29243250 -15664320 + MLT1J LTR MaLR 1 497 -14 339 151 137 0 chr21 29243622 29243695 -15663875 - MER5C DNA MER1_type -18 306 224 2104 115 4 0 chr21 29243695 29243974 -15663596 + AluSq SINE Alu 1 280 -33 300 154 0 0 chr21 29243975 29244027 -15663543 + GA-rich Low_complexity Low_complexity 3 54 0 572 217 92 37 chr21 29244027 29244244 -15663326 - MER5C DNA MER1_type -93 231 3 1675 194 62 24 chr21 29244259 29244631 -15662939 - MLT1B LTR MaLR -4 386 1 270 0 0 0 chr21 29245714 29245744 -15661826 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1821 168 0 14 chr21 29245750 29246035 -15661535 - AluJo SINE Alu -30 282 2 2064 147 3 0 chr21 29246128 29246434 -15661136 + AluSx SINE Alu 1 307 -5 209 260 0 20 chr21 29246615 29246665 -15660905 + MIR3 SINE MIR 109 157 -51 201 237 17 85 chr21 29246767 29246826 -15660744 + L2 LINE L2 3180 3234 -79 867 219 121 94 chr21 29246832 29247247 -15660323 - MLT1A1 LTR MaLR -1 414 1 205 261 0 0 chr21 29247271 29247317 -15660253 + MER5C DNA MER1_type 31 76 -248 223 304 0 0 chr21 29247455 29247511 -15660059 - MER5C DNA MER1_type -268 56 1 450 260 141 42 chr21 29247934 29248126 -15659444 + MIR SINE MIR 41 251 -11 278 141 0 16 chr21 29248446 29248510 -15659060 + (TAA)n Simple_repeat Simple_repeat 3 65 0 2430 94 0 0 chr21 29248898 29249205 -15658365 - AluSc SINE Alu -2 307 1 1720 162 3 13 chr21 29251474 29251777 -15655793 - AluJo SINE Alu -12 300 1 207 114 0 0 chr21 29252402 29252437 -15655133 + (T)n Simple_repeat Simple_repeat 1 35 0 2509 182 9 85 chr21 29253193 29253770 -15653800 + MER74A LTR ERVL 26 558 0 2037 194 91 26 chr21 29254970 29255430 -15652140 + LTR2B LTR ERV1 1 490 0 310 185 0 0 chr21 29255779 29255833 -15651737 + L1MC4 LINE L1 6650 6703 -1339 209 215 0 15 chr21 29255876 29255941 -15651629 + (TA)n Simple_repeat Simple_repeat 1 64 0 607 286 76 43 chr21 29255988 29256527 -15651043 + L1ME3A LINE L1 2453 3009 -3137 345 307 127 36 chr21 29256653 29257148 -15650422 + L1ME3A LINE L1 3196 3735 -2411 22 0 0 0 chr21 29257189 29257211 -15650359 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr21 29257276 29257305 -15650265 + AT_rich Low_complexity Low_complexity 1 29 0 882 271 121 45 chr21 29257560 29258181 -15649389 + L1ME3A LINE L1 4410 4982 -1182 822 158 15 15 chr21 29258181 29258314 -15649256 - FLAM_C SINE Alu 0 133 1 882 271 121 45 chr21 29258314 29258782 -15648788 + L1ME3A LINE L1 4982 5581 -583 590 283 57 15 chr21 29258801 29259066 -15648504 + L1ME3A LINE L1 5676 5951 -219 2410 84 0 0 chr21 29259127 29259426 -15648144 + AluY SINE Alu 1 299 -12 2440 62 0 39 chr21 29259711 29260019 -15647551 + AluY SINE Alu 1 296 -15 2365 86 0 13 chr21 29261276 29261591 -15645979 - AluY SINE Alu 0 311 1 206 242 129 0 chr21 29261593 29261655 -15645915 + MIR SINE MIR 67 136 -72 2286 218 85 43 chr21 29261892 29262335 -15645235 - MLT1E2 LTR MaLR 0 626 150 2307 63 42 3 chr21 29262335 29262621 -15644949 + AluY SINE Alu 1 297 -14 2286 218 85 43 chr21 29262621 29262778 -15644792 - MLT1E2 LTR MaLR -476 150 1 182 302 16 95 chr21 29262785 29262911 -15644659 + MIR SINE MIR 12 127 -135 201 250 28 83 chr21 29262953 29263025 -15644545 + L2 LINE L2 3205 3272 0 * 227 330 75 0 chr21 29263010 29263104 -15644466 + L3 LINE CR1 563 663 -914 21 0 0 0 chr21 29263970 29263991 -15643579 + AT_rich Low_complexity Low_complexity 1 21 0 526 224 86 73 chr21 29264500 29264792 -15642778 + MLT1J2 LTR MaLR 118 449 -1 2021 146 20 0 chr21 29265082 29265383 -15642187 + AluSx SINE Alu 1 307 -5 1621 214 52 14 chr21 29266820 29267241 -15640329 - L1ME3A LINE L1 0 6170 5734 268 311 11 11 chr21 29267606 29267696 -15639874 - L2 LINE L2 -10 3262 3173 1508 219 0 3 chr21 29267740 29268037 -15639533 + L1MB1 LINE L1 5872 6167 -1 274 329 0 0 chr21 29268958 29269043 -15638527 - L2 LINE L2 0 3313 3229 318 303 148 8 chr21 29269797 29269919 -15637651 - MIR3 SINE MIR -50 158 20 3245 178 22 83 chr21 29270459 29270717 -15636853 + LTR8 LTR ERV1 1 273 -418 1726 100 66 4 chr21 29270717 29270958 -15636612 + AluSx SINE Alu 43 298 -14 3245 178 22 83 chr21 29270958 29271435 -15636135 + LTR8 LTR ERV1 273 691 0 25 0 0 0 chr21 29272646 29272671 -15634899 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr21 29272787 29272814 -15634756 + (TG)n Simple_repeat Simple_repeat 2 28 0 309 281 52 0 chr21 29272847 29272943 -15634627 - L1MC4 LINE L1 -1327 6715 6615 710 251 132 0 chr21 29273880 29274115 -15633455 - LTR16A LTR ERVL -184 266 1 2025 119 147 44 chr21 29274192 29274538 -15633032 + MSTA LTR MaLR 1 393 -35 2064 115 0 18 chr21 29274538 29274824 -15632746 - AluSg SINE Alu -13 297 17 2025 119 147 44 chr21 29274824 29274865 -15632705 + MSTA LTR MaLR 393 428 0 1181 254 38 30 chr21 29274880 29275277 -15632293 + LTR16C LTR ERVL 88 487 -4 1911 207 3 3 chr21 29275446 29275799 -15631771 - MLT1A1 LTR MaLR -12 353 1 2273 172 30 0 chr21 29275929 29276330 -15631240 - MER67C LTR ERV1 0 710 298 607 136 91 45 chr21 29276324 29276420 -15631150 - MER67C LTR ERV1 -572 138 33 * 2047 107 11 4 chr21 29276420 29276701 -15630869 - AluSq SINE Alu -10 303 21 607 136 91 45 chr21 29276701 29276736 -15630834 - MER67C LTR ERV1 -677 33 1 445 305 76 25 chr21 29276768 29276965 -15630605 - L2 LINE L2 -419 2895 2689 186 256 85 37 chr21 29276961 29277043 -15630527 - L2 LINE L2 0 3313 3228 * 1858 226 31 74 chr21 29277735 29278278 -15629292 + MLT2B1 LTR ERVL 1 520 0 380 308 30 8 chr21 29278687 29278820 -15628750 - MIR SINE MIR -9 253 118 2522 169 26 77 chr21 29278830 29279375 -15628195 - MLT2B1 LTR ERVL 0 520 4 1913 137 37 17 chr21 29279680 29279979 -15627591 + AluSg SINE Alu 1 305 -5 2500 84 3 0 chr21 29280094 29280405 -15627165 + AluSx SINE Alu 1 312 0 1888 152 10 0 chr21 29281338 29281634 -15625936 - AluSx SINE Alu -13 299 1 379 252 27 38 chr21 29281674 29281796 -15625774 - MIR SINE MIR -73 135 17 459 265 70 77 chr21 29282651 29282969 -15624601 + L2 LINE L2 2784 3099 -214 1870 162 14 0 chr21 29283236 29283532 -15624038 - AluJb SINE Alu -12 300 1 1773 191 10 77 chr21 29283683 29283862 -15623708 + MLT1B LTR MaLR 1 190 -200 2251 81 0 39 chr21 29283862 29284171 -15623399 + AluY SINE Alu 1 297 -14 1773 191 10 77 chr21 29284171 29284409 -15623161 + MLT1B LTR MaLR 190 390 0 212 222 181 0 chr21 29284530 29284602 -15622968 + MIR SINE MIR 58 142 -120 329 316 26 0 chr21 29285235 29285349 -15622221 - MER76 LTR ERV -30 658 542 * 1111 247 110 48 chr21 29285346 29285719 -15621851 - MER76 LTR ERV -292 396 1 414 0 0 0 chr21 29286114 29286160 -15621410 + (TG)n Simple_repeat Simple_repeat 2 47 0 1711 191 55 47 chr21 29286247 29286468 -15621102 - MLT1B LTR MaLR 0 390 163 1978 143 7 3 chr21 29286468 29286769 -15620801 - AluSx SINE Alu -10 302 1 1711 191 55 47 chr21 29286769 29286930 -15620640 - MLT1B LTR MaLR -227 163 5 2728 106 3 16 chr21 29287608 29287977 -15619593 - THE1B LTR MaLR 0 364 1 2620 121 6 6 chr21 29289210 29289574 -15617996 - THE1B LTR MaLR 0 364 1 1374 198 109 15 chr21 29289793 29290131 -15617439 - L1ME2 LINE L1 -9 6155 5786 21 0 0 0 chr21 29290514 29290535 -15617035 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr21 29290685 29290715 -15616855 + AT_rich Low_complexity Low_complexity 1 30 0 2430 91 3 0 chr21 29291553 29291862 -15615708 + AluY SINE Alu 1 310 -1 889 172 52 104 chr21 29293310 29293560 -15614010 - L1ME2 LINE L1 -371 5793 5557 2397 86 10 0 chr21 29294200 29294504 -15613066 - AluSq SINE Alu -6 307 1 497 217 69 63 chr21 29294872 29295061 -15612509 + MLT1G LTR MaLR 390 579 -11 2411 288 63 22 chr21 29295063 29296032 -15611538 + ERVL-E LTR ERVL 3625 4693 -1071 282 260 138 21 chr21 29296114 29296357 -15611213 + ERVL-E LTR ERVL 5268 5580 -184 5907 40 5 0 chr21 29296373 29297039 -15610531 + L1PA5 LINE L1 5485 6153 -1 261 214 71 36 chr21 29297148 29297232 -15610338 + Ricksha DNA DNA 287 373 -2873 723 273 23 17 chr21 29297268 29297444 -15610126 + MLT2E LTR ERVL 96 272 -356 1227 202 23 15 chr21 29297473 29297735 -15609835 + MLT2D LTR ERVL 83 346 -68 544 160 28 14 chr21 29297736 29297880 -15609690 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 870 280 64 14 chr21 29297948 29298230 -15609340 + MLT2E LTR ERVL 333 628 0 270 271 0 0 chr21 29298337 29298396 -15609174 - L2 LINE L2 0 3272 3214 * 422 287 160 11 chr21 29298395 29298583 -15608987 + L3 LINE CR1 1241 1456 -121 354 289 174 10 chr21 29298825 29299026 -15608544 - MIR SINE MIR -24 238 5 1680 115 119 11 chr21 29299067 29299336 -15608234 + AluSg1 SINE Alu 1 298 -11 477 299 48 39 chr21 29299473 29299680 -15607890 - MIR SINE MIR -1 261 53 255 224 0 93 chr21 29301240 29301347 -15606223 + LTR67 LTR ERVL 457 553 -4 1946 158 0 13 chr21 29301615 29301925 -15605645 + AluSx SINE Alu 1 306 -6 2491 153 82 47 chr21 29303867 29304352 -15603218 - MLT1D LTR MaLR -2 503 2 348 43 0 0 chr21 29304363 29304409 -15603161 + (CA)n Simple_repeat Simple_repeat 1 46 0 1007 138 0 0 chr21 29304765 29304910 -15602660 + FRAM SINE Alu 18 162 -14 210 173 40 13 chr21 29305060 29305135 -15602435 + GA-rich Low_complexity Low_complexity 3 79 0 231 353 43 26 chr21 29306226 29306342 -15601228 - MIR SINE MIR -32 230 113 1107 255 81 35 chr21 29307710 29307743 -15599827 + MLT1D LTR MaLR 1 31 -474 1743 195 0 7 chr21 29307743 29308051 -15599519 + AluJo SINE Alu 1 306 -6 1107 255 81 35 chr21 29308051 29308500 -15599070 + MLT1D LTR MaLR 31 505 0 885 114 0 43 chr21 29309460 29309600 -15597970 - FLAM_C SINE Alu -1 142 9 298 263 0 86 chr21 29309609 29309761 -15597809 - MIR SINE MIR -50 212 74 1277 231 123 29 chr21 29310520 29310862 -15596708 + MLT1E LTR MaLR 150 523 -70 2138 83 4 0 chr21 29311362 29311627 -15595943 + AluY SINE Alu 1 266 -45 463 183 331 0 chr21 29311681 29311823 -15595747 + MER5A DNA MER1_type 1 189 0 295 189 207 45 chr21 29311952 29312063 -15595507 + L1ME4a LINE L1 5990 6118 -3 2113 111 13 25 chr21 29312460 29312776 -15594794 + AluSx SINE Alu 1 312 0 398 278 45 57 chr21 29312801 29312977 -15594593 - MER5A DNA MER1_type -6 183 10 3794 83 313 0 chr21 29313184 29313813 -15593757 - LTR12 LTR ERV1 0 826 1 1284 165 52 22 chr21 29313974 29314204 -15593366 + AluJo SINE Alu 1 237 -75 22 0 0 0 chr21 29314213 29314235 -15593335 + AT_rich Low_complexity Low_complexity 1 22 0 2211 92 3 7 chr21 29314274 29314567 -15593003 - AluSc SINE Alu -17 292 1 476 231 39 45 chr21 29314593 29314749 -15592821 - MIR SINE MIR -79 183 29 342 234 23 8 chr21 29315688 29315816 -15591754 + GA-rich Low_complexity Low_complexity 3 132 0 2217 125 0 0 chr21 29316161 29316472 -15591098 + AluSx SINE Alu 1 311 -1 206 119 48 24 chr21 29316576 29316618 -15590952 + GA-rich Low_complexity Low_complexity 5 47 0 527 43 14 0 chr21 29316620 29316690 -15590880 + (GA)n Simple_repeat Simple_repeat 2 72 0 214 294 183 7 chr21 29317137 29317290 -15590280 + MIR SINE MIR 35 214 -48 1724 181 6 29 chr21 29317440 29317788 -15589782 - L1MB4 LINE L1 -2 6178 5839 4426 121 126 20 chr21 29317788 29318534 -15589036 - LTR12 LTR ERV1 0 826 2 757 198 42 49 chr21 29318612 29318900 -15588670 - pTR5 LTR ERV1 -1410 1028 743 997 186 30 144 chr21 29318900 29318928 -15588642 - L1MB4 LINE L1 -338 5842 5812 2041 94 72 0 chr21 29318928 29319204 -15588366 + AluSx SINE Alu 5 300 -12 997 186 30 144 chr21 29319204 29319407 -15588163 - L1MB4 LINE L1 -368 5812 5672 553 234 39 0 chr21 29319407 29319535 -15588035 - FLAM_A SINE Alu 0 133 1 997 186 30 144 chr21 29319535 29319699 -15587871 - L1MB4 LINE L1 -508 5672 5491 385 163 88 0 chr21 29319706 29319786 -15587784 - L1MB2 LINE L1 -117 6054 5968 * 4456 170 30 4 chr21 29319780 29320838 -15586732 - L1MB2 LINE L1 -115 6056 4980 27 49 0 0 chr21 29321334 29321375 -15586195 + AT_rich Low_complexity Low_complexity 1 41 0 9354 160 36 30 chr21 29321393 29322015 -15585555 - L1MA4 LINE L1 -5 6295 5678 2161 128 10 0 chr21 29322015 29322319 -15585251 - AluSx SINE Alu -5 307 1 9354 160 36 30 chr21 29322319 29323349 -15584221 - L1MA4 LINE L1 -622 5678 4655 1932 180 72 36 chr21 29323349 29323766 -15583804 + MSTB1 LTR MaLR 1 432 0 9354 160 36 30 chr21 29323766 29323822 -15583748 - L1MA4 LINE L1 -1645 4655 4601 2170 151 11 30 chr21 29323822 29324193 -15583377 + THE1B LTR MaLR 1 364 0 9354 160 36 30 chr21 29324193 29324430 -15583140 - L1MA4 LINE L1 -1699 4601 4367 1473 199 34 10 chr21 29324430 29324727 -15582843 + AluJb SINE Alu 1 304 -8 9354 160 36 30 chr21 29324727 29325711 -15581859 - L1MA4 LINE L1 -1933 4367 3749 924 121 0 0 chr21 29325711 29325852 -15581718 - L1PA15 LINE L1 -1 6164 6024 9354 160 36 30 chr21 29325852 29325958 -15581612 - L1MA4 LINE L1 -2551 3749 3645 216 200 0 0 chr21 29326452 29326492 -15581078 + (CATA)n Simple_repeat Simple_repeat 2 41 0 2401 73 0 7 chr21 29326767 29327069 -15580501 + AluY SINE Alu 1 300 -11 3408 97 2 2 chr21 29327117 29327570 -15580000 - MLT2A2 LTR ERVL 0 453 1 227 362 0 79 chr21 29327730 29327882 -15579688 - LTR67 LTR ERVL -338 219 80 377 255 152 22 chr21 29327986 29328020 -15579550 - L2 LINE L2 -744 2570 2542 2311 111 3 0 chr21 29328020 29328327 -15579243 - AluSx SINE Alu -4 308 1 377 255 152 22 chr21 29328327 29328523 -15579047 - L2 LINE L2 -772 2542 2310 463 233 50 0 chr21 29328717 29328837 -15578733 + MIR3 SINE MIR 77 202 -6 217 229 16 0 chr21 29329182 29329243 -15578327 + MER5B DNA MER1_type 22 83 -95 2296 138 56 29 chr21 29330024 29330063 -15577507 - MSTB LTR MaLR -1 425 389 2347 113 3 0 chr21 29330063 29330372 -15577198 + AluSg SINE Alu 1 310 0 2296 138 56 29 chr21 29330372 29330746 -15576824 - MSTB LTR MaLR -37 389 1 382 233 86 48 chr21 29330763 29330973 -15576597 + L1ME4a LINE L1 5793 6010 -111 1487 142 24 133 chr21 29331095 29331427 -15576143 + AluJo SINE Alu 1 296 -6 593 225 14 77 chr21 29331651 29331860 -15575710 - MER34 LTR ERV1 -15 527 332 1171 103 29 6 chr21 29331860 29332035 -15575535 - LTR1B LTR ERV1 -640 186 8 407 211 0 83 chr21 29332389 29332424 -15575146 - MER5B DNA MER1_type -21 157 121 2609 154 14 23 chr21 29332424 29332859 -15574711 - Tigger2a DNA MER2_type 0 434 4 407 211 0 83 chr21 29332859 29332956 -15574614 - MER5B DNA MER1_type -57 121 36 638 151 8 32 chr21 29333952 29334047 -15573523 - MSTD LTR MaLR 0 396 305 3199 139 12 8 chr21 29334047 29334500 -15573070 + MER84 LTR ERVI 1 458 -49 2381 124 17 11 chr21 29334500 29334862 -15572708 - THE1B LTR MaLR 0 364 1 3199 139 12 8 chr21 29334862 29334911 -15572659 + MER84 LTR ERVI 458 505 -2 506 225 75 17 chr21 29334911 29335022 -15572548 - MSTD LTR MaLR -85 311 194 3190 155 47 34 chr21 29335038 29335511 -15572059 - LTR29 LTR ERV1 0 622 138 2422 92 49 9 chr21 29335511 29335858 -15571712 - THE1B LTR MaLR -3 361 1 3190 155 47 34 chr21 29335858 29335998 -15571572 - LTR29 LTR ERV1 -484 138 1 519 180 0 0 chr21 29336014 29336103 -15571467 - MSTD LTR MaLR -307 89 1 255 111 44 22 chr21 29336165 29336210 -15571360 + MSTA LTR MaLR 1 46 -382 2536 129 3 3 chr21 29336210 29336574 -15570996 - THE1B LTR MaLR 0 364 1 10613 104 31 12 chr21 29336574 29338107 -15569463 - THE1B-int LTR MaLR 0 1580 64 857 122 18 14 chr21 29338162 29338350 -15569220 + MSTA LTR MaLR 178 428 0 2262 157 100 52 chr21 29338757 29338821 -15568749 + MER34B LTR ERV1 27 86 -499 2249 116 0 0 chr21 29338821 29339138 -15568432 - AluSx SINE Alu 0 312 1 2262 157 100 52 chr21 29339138 29339639 -15567931 + MER34B LTR ERV1 86 580 -5 2449 79 3 0 chr21 29340123 29340426 -15567144 + AluSg SINE Alu 1 304 -6 360 308 49 14 chr21 29340804 29340947 -15566623 - MIR SINE MIR -95 167 20 302 260 63 8 chr21 29341047 29341174 -15566396 - Charlie2 DNA MER1_type -16 2846 2713 654 185 154 107 chr21 29341325 29341644 -15565926 + MLT1H LTR MaLR 216 549 0 764 209 209 23 chr21 29341648 29342002 -15565568 - Charlie2 DNA MER1_type -138 2724 2305 1707 174 11 7 chr21 29342003 29342284 -15565286 + AluJo SINE Alu 1 282 -30 21 0 0 0 chr21 29342312 29342333 -15565237 + AT_rich Low_complexity Low_complexity 1 21 0 249 83 0 0 chr21 29342492 29342528 -15565042 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 333 0 0 0 chr21 29342527 29342564 -15565006 + (GA)n Simple_repeat Simple_repeat 2 38 0 1613 200 76 22 chr21 29342571 29342981 -15564589 - Charlie2 DNA MER1_type -571 2291 1860 732 272 91 25 chr21 29343000 29343243 -15564327 - Charlie2 DNA MER1_type -2557 305 47 2134 75 26 0 chr21 29343855 29344123 -15563447 + AluSc SINE Alu 21 295 -14 269 300 66 55 chr21 29344308 29344655 -15562915 + L1ME4a LINE L1 5574 5924 -197 1623 108 58 8 chr21 29345216 29345457 -15562113 + AluSx SINE Alu 21 273 -39 321 82 0 0 chr21 29345457 29345506 -15562064 + (GA)n Simple_repeat Simple_repeat 2 50 0 2126 111 7 17 chr21 29346019 29346316 -15561254 - AluSx SINE Alu -18 294 1 2327 90 0 7 chr21 29346616 29346917 -15560653 + AluSg SINE Alu 1 299 -11 1358 164 42 8 chr21 29347678 29347916 -15559654 - AluJo SINE Alu -18 294 49 249 235 15 15 chr21 29347923 29347991 -15559579 - MER5A DNA MER1_type -118 71 4 25 0 0 0 chr21 29349241 29349266 -15558304 + AT_rich Low_complexity Low_complexity 1 25 0 2261 121 0 0 chr21 29355707 29356014 -15551556 - AluSx SINE Alu -4 308 2 412 58 0 231 chr21 29356100 29356204 -15551366 - MADE1 DNA Mariner 0 80 1 2076 104 7 0 chr21 29356428 29356741 -15550829 + AluY SINE Alu 1 315 0 2425 92 3 0 chr21 29357553 29357856 -15549714 - AluSg SINE Alu -6 304 1 1608 190 43 4 chr21 29359537 29359816 -15547754 + AluJo SINE Alu 1 290 -22 274 77 0 39 chr21 29360115 29360167 -15547403 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 1073 152 16 5 chr21 29361853 29362169 -15545401 + MLT1A1 LTR MaLR 1 365 0 442 250 141 11 chr21 29363741 29363925 -15543645 + MER58A DNA MER1_type 1 208 -16 2319 101 0 10 chr21 29363928 29364236 -15543334 + AluSc SINE Alu 1 305 -4 2327 116 0 0 chr21 29364648 29364951 -15542619 - AluSx SINE Alu -9 303 1 702 80 35 0 chr21 29366312 29366425 -15541145 + L1MA8 LINE L1 6165 6281 -10 208 359 61 0 chr21 29367312 29367443 -15540127 - L3 LINE CR1 -423 1154 1016 700 238 176 24 chr21 29369893 29370263 -15537307 + LTR37A LTR ERV1 1 426 0 738 183 7 7 chr21 29370573 29370715 -15536855 - L1MA5A LINE L1 -4 6293 6152 276 300 0 0 chr21 29370859 29370939 -15536631 - L2 LINE L2 -1 3312 3233 28 0 0 0 chr21 29371175 29371203 -15536367 + AT_rich Low_complexity Low_complexity 1 28 0 931 202 104 9 chr21 29371936 29372402 -15535168 + MER74A LTR ERVL 3 555 -3 2041 118 3 43 chr21 29372477 29372799 -15534771 + AluSx SINE Alu 2 310 -2 372 187 56 74 chr21 29373179 29373350 -15534220 + MER21A LTR ERV1 331 575 -356 203 229 21 0 chr21 29373578 29373626 -15533944 + (TA)n Simple_repeat Simple_repeat 2 50 0 40 101 0 0 chr21 29373638 29373776 -15533794 + AT_rich Low_complexity Low_complexity 1 138 0 2112 131 3 22 chr21 29373860 29374174 -15533396 - AluSx SINE Alu -4 308 1 2409 99 0 3 chr21 29374686 29374998 -15532572 + AluSx SINE Alu 1 311 -1 1309 158 0 10 chr21 29375924 29376133 -15531437 - MER6B DNA MER2_type 0 210 4 1679 104 119 4 chr21 29376315 29376566 -15531004 + AluSx SINE Alu 25 304 -8 2523 81 0 0 chr21 29376569 29376876 -15530694 + AluSx SINE Alu 1 307 -5 420 81 69 35 chr21 29377773 29377946 -15529624 + (TA)n Simple_repeat Simple_repeat 2 180 0 216 0 0 0 chr21 29378145 29378169 -15529401 + (A)n Simple_repeat Simple_repeat 1 24 0 2177 109 106 6 chr21 29378348 29378679 -15528891 + THE1B LTR MaLR 1 364 0 236 290 0 0 chr21 29378924 29378986 -15528584 + MER103 DNA DNA 54 115 -51 1284 177 35 0 chr21 29379373 29379599 -15527971 - MER46A DNA MER2_type -2 234 1 247 79 26 0 chr21 29379967 29380005 -15527565 + L1MC4a LINE L1 6221 6259 -1549 271 236 11 45 chr21 29380040 29380129 -15527441 + L1MC4 LINE L1 7837 7922 -120 218 224 0 20 chr21 29380134 29380183 -15527387 + (CATA)n Simple_repeat Simple_repeat 1 48 0 770 143 0 8 chr21 29380197 29380323 -15527247 + L1MC4 LINE L1 7918 8042 0 2969 228 39 41 chr21 29380555 29381883 -15525687 + L1ME1 LINE L1 4831 6161 -5 2342 116 0 0 chr21 29382162 29382473 -15525097 - AluSq SINE Alu -2 311 1 965 181 112 19 chr21 29383446 29383651 -15523919 - MER58A DNA MER1_type 0 224 1 1834 153 7 17 chr21 29383917 29384218 -15523352 + AluJb SINE Alu 1 298 -14 559 213 8 16 chr21 29384822 29384944 -15522626 - MIR SINE MIR -129 133 13 644 191 20 14 chr21 29385412 29385559 -15522011 + MER5B DNA MER1_type 1 148 -30 2461 67 10 0 chr21 29385641 29385941 -15521629 - AluY SINE Alu -8 303 1 289 164 0 18 chr21 29386570 29386625 -15520945 + L1MB8 LINE L1 6125 6178 0 4976 161 27 4 chr21 29387140 29387983 -15519587 - MER6 DNA MER2_type 0 865 3 387 0 0 0 chr21 29391175 29391218 -15516352 + (TG)n Simple_repeat Simple_repeat 2 44 0 780 255 94 4 chr21 29392234 29392469 -15515101 + MIR SINE MIR 7 262 0 1062 83 0 0 chr21 29392782 29392914 -15514656 - AluSg/x SINE Alu -13 299 168 227 316 51 0 chr21 29393928 29394007 -15513563 - MIR SINE MIR -112 150 68 2666 43 0 0 chr21 29394248 29394547 -15513023 + AluY SINE Alu 1 299 -12 35 54 0 14 chr21 29395390 29395426 -15512144 + AT_rich Low_complexity Low_complexity 1 36 -37 1618 191 35 42 chr21 29395426 29395803 -15511767 + MLT1A2 LTR MaLR 1 374 0 35 54 0 14 chr21 29395803 29395840 -15511730 + AT_rich Low_complexity Low_complexity 36 73 0 228 253 0 13 chr21 29395846 29395921 -15511649 + (TTAA)n Simple_repeat Simple_repeat 1 74 0 334 252 10 39 chr21 29396223 29396326 -15511244 - MER5A DNA MER1_type -80 109 10 2167 110 23 3 chr21 29397223 29397522 -15510048 - AluSg SINE Alu -5 305 1 328 213 111 9 chr21 29397583 29397691 -15509879 + L1MEd LINE L1 465 583 -5947 322 215 153 74 chr21 29397799 29397962 -15509608 - MER20B DNA MER1_type -606 177 2 891 278 117 57 chr21 29397967 29398225 -15509345 + L1MEd LINE L1 654 895 -5635 2208 121 3 0 chr21 29398225 29398531 -15509039 - AluSx SINE Alu -5 307 1 891 278 117 57 chr21 29398531 29398543 -15509027 + L1MEd LINE L1 895 905 -5625 2346 95 0 0 chr21 29398543 29398839 -15508731 - AluY SINE Alu -15 296 1 891 278 117 57 chr21 29398839 29399131 -15508439 + L1MEd LINE L1 905 1251 -5279 2157 124 0 3 chr21 29399150 29399474 -15508096 + AluSx SINE Alu 1 312 0 253 303 114 6 chr21 29399637 29399812 -15507758 + L1MEd LINE L1 1849 2042 -4498 313 259 159 18 chr21 29400617 29400787 -15506783 + L1M4 LINE L1 4642 4835 -1311 419 176 0 14 chr21 29400798 29400872 -15506698 - Tigger5 DNA MER2_type 0 2323 2251 325 164 0 18 chr21 29400840 29400895 -15506675 - Tigger5 DNA MER2_type -2268 55 2 * 2459 94 0 0 chr21 29400895 29401202 -15506368 + AluSg SINE Alu 1 307 -3 861 303 43 8 chr21 29401258 29401657 -15505913 + L1M4 LINE L1 4883 5295 -851 818 229 184 70 chr21 29401835 29402236 -15505334 + MLT1H LTR MaLR 101 547 -2 783 194 12 41 chr21 29402861 29403031 -15504539 + FRAM SINE Alu 1 165 -1 366 195 0 0 chr21 29403635 29403717 -15503853 + GA-rich Low_complexity Low_complexity 3 84 0 2284 99 10 3 chr21 29404782 29405085 -15502485 - AluSq SINE Alu -8 305 1 1807 153 7 14 chr21 29405091 29405386 -15502184 - AluJb SINE Alu -19 293 1 2313 89 0 0 chr21 29405746 29406038 -15501532 - AluSx SINE Alu -20 292 1 867 222 41 5 chr21 29406157 29406351 -15501219 + MER20 DNA MER1_type 1 201 -18 234 262 74 25 chr21 29406948 29407070 -15500500 + MER5B DNA MER1_type 1 128 -50 695 207 52 23 chr21 29407268 29407442 -15500128 - MIR SINE MIR -10 252 74 2156 110 0 0 chr21 29407464 29407746 -15499824 + AluSx SINE Alu 1 282 -30 2477 69 7 0 chr21 29408440 29408745 -15498825 - AluY SINE Alu -4 307 1 2380 75 10 0 chr21 29408898 29409190 -15498380 - AluSp SINE Alu -18 295 1 2226 122 0 0 chr21 29409244 29409555 -15498015 + AluSq SINE Alu 1 311 -2 195 243 0 0 chr21 29409627 29409664 -15497906 + MIR SINE MIR 220 256 -6 296 296 53 40 chr21 29409703 29409855 -15497715 - MARNA DNA Mariner -399 187 34 2450 83 0 0 chr21 29410042 29410343 -15497227 - AluSx SINE Alu -9 303 3 1135 232 14 0 chr21 29410442 29410662 -15496908 - MER58A DNA MER1_type 0 224 2 212 296 82 25 chr21 29411501 29411660 -15495910 - L2 LINE L2 -155 3117 2950 219 139 0 0 chr21 29411877 29411913 -15495657 + (TTC)n Simple_repeat Simple_repeat 2 37 0 1922 140 23 7 chr21 29411915 29412222 -15495348 - AluJo SINE Alu 0 312 1 1903 68 25 0 chr21 29413836 29414071 -15493499 - AluSx SINE Alu -14 298 58 862 156 84 24 chr21 29414074 29414241 -15493329 - AluSg/x SINE Alu -2 310 134 2286 105 0 0 chr21 29414241 29414545 -15493025 - AluSq SINE Alu -9 304 1 225 184 0 0 chr21 29415415 29415453 -15492117 + MLT1C LTR MaLR 53 90 -377 244 196 29 43 chr21 29415474 29415612 -15491958 + (TAA)n Simple_repeat Simple_repeat 2 137 0 * 285 218 40 8 chr21 29415524 29415648 -15491922 + (TA)n Simple_repeat Simple_repeat 1 128 0 275 156 34 34 chr21 29415648 29415827 -15491743 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 1406 241 31 11 chr21 29415859 29416211 -15491359 + MLT1C LTR MaLR 108 466 -1 1473 151 0 40 chr21 29416666 29416944 -15490626 + AluJo SINE Alu 39 305 -7 1630 193 3 10 chr21 29418707 29419012 -15488558 - AluJo SINE Alu -9 303 1 2277 132 0 0 chr21 29419183 29419493 -15488077 - AluSx SINE Alu -2 310 1 1868 134 0 23 chr21 29420261 29420560 -15487010 + AluJo SINE Alu 1 292 -20 2150 118 20 0 chr21 29421295 29421592 -15485978 - AluSc SINE Alu -6 303 1 319 218 127 0 chr21 29421597 29421707 -15485863 + MER5C DNA MER1_type 1 124 -200 307 250 0 42 chr21 29421733 29421829 -15485741 + MER5C DNA MER1_type 233 324 0 2127 104 24 0 chr21 29422474 29422761 -15484809 + AluSx SINE Alu 1 294 -18 683 240 64 24 chr21 29422806 29423164 -15484406 + MLT1I LTR MaLR 1 409 0 2921 176 25 16 chr21 29423314 29423751 -15483819 + MER68 LTR ERV1 6 451 -111 3257 164 14 59 chr21 29423751 29424392 -15483178 + LTR9 LTR ERV1 1 612 0 2921 176 25 16 chr21 29424392 29424506 -15483064 + MER68 LTR ERV1 451 562 0 1816 146 148 29 chr21 29424658 29425103 -15482467 + LTR54B LTR ERV1 1 498 0 5927 130 27 14 chr21 29426004 29426438 -15481132 + L1PA16 LINE L1 5080 5507 -659 2203 113 3 28 chr21 29426438 29426758 -15480812 - AluSx SINE Alu 0 312 1 5927 130 27 14 chr21 29426758 29427389 -15480181 + L1PA16 LINE L1 5507 6157 -9 21 0 0 0 chr21 29427389 29427410 -15480160 + AT_rich Low_complexity Low_complexity 1 21 0 2320 53 40 20 chr21 29427506 29427807 -15479763 - AluY SINE Alu -4 307 1 372 264 102 30 chr21 29427882 29428052 -15479518 - MIR3 SINE MIR -65 143 3 2222 118 3 0 chr21 29429671 29429968 -15477602 - AluSx SINE Alu -14 298 1 210 150 0 0 chr21 29430049 29430089 -15477481 + (A)n Simple_repeat Simple_repeat 1 40 0 261 181 42 125 chr21 29430255 29430327 -15477243 + L2 LINE L2 3201 3266 -6 1128 123 6 0 chr21 29430327 29430489 -15477081 + AluSq SINE Alu 135 297 -16 1228 198 4 17 chr21 29430492 29430730 -15476840 + Charlie4a DNA MER1_type 71 305 -203 676 209 80 20 chr21 29430764 29430965 -15476605 + Charlie4a DNA MER1_type 292 504 -4 576 268 7 13 chr21 29431598 29431751 -15475819 + L1ME1 LINE L1 6010 6161 -5 1768 154 0 57 chr21 29432408 29432726 -15474844 + AluJo SINE Alu 1 300 -12 2326 81 0 0 chr21 29433253 29433561 -15474009 - AluSq SINE Alu 0 308 1 595 254 72 34 chr21 29434326 29434562 -15473008 + L1MC5 LINE L1 7685 7929 -32 1798 158 9 25 chr21 29435822 29436139 -15471431 + AluJb SINE Alu 1 312 0 230 247 12 35 chr21 29437007 29437092 -15470478 + (CATA)n Simple_repeat Simple_repeat 4 86 0 984 102 0 0 chr21 29437899 29438027 -15469543 - AluSq/x SINE Alu -183 129 2 291 289 48 0 chr21 29439248 29439352 -15468218 + MIR SINE MIR 35 143 -119 372 305 32 19 chr21 29439773 29439927 -15467643 + L1ME4a LINE L1 5946 6101 -20 1293 39 25 4 chr21 29440673 29440953 -15466617 + (GAAA)n Simple_repeat Simple_repeat 1 286 0 21 0 0 0 chr21 29441123 29441144 -15466426 + AT_rich Low_complexity Low_complexity 1 21 0 2171 76 40 27 chr21 29442745 29443046 -15464524 - AluY SINE Alu -6 305 1 1410 149 111 66 chr21 29443885 29444174 -15463396 + AluJo SINE Alu 1 302 -10 1810 197 0 0 chr21 29444181 29444531 -15463039 + AluJo SINE Alu 1 350 0 805 135 8 16 chr21 29444938 29445064 -15462506 - FLAM_C SINE Alu -18 125 1 1964 107 100 4 chr21 29445447 29445728 -15461842 + AluSg SINE Alu 1 308 -2 2124 114 3 31 chr21 29446017 29446334 -15461236 + AluSx SINE Alu 1 308 -4 2196 109 3 3 chr21 29447064 29447358 -15460212 + AluSg SINE Alu 1 294 -16 2162 119 0 3 chr21 29448424 29448717 -15458853 + AluSx SINE Alu 1 292 -20 457 273 103 66 chr21 29448780 29449099 -15458471 + MLT1J LTR MaLR 120 450 -61 542 77 26 0 chr21 29449163 29449241 -15458329 - Alu SINE Alu -3 307 228 192 40 0 0 chr21 29449873 29449898 -15457672 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 404 304 52 31 chr21 29450304 29450495 -15457075 + L2 LINE L2 3119 3313 0 840 59 0 0 chr21 29450548 29450650 -15456920 + L1PA5 LINE L1 6053 6154 0 253 206 0 0 chr21 29452780 29452843 -15454727 - L1MC4 LINE L1 -1340 6702 6640 2236 116 10 10 chr21 29452846 29453156 -15454414 - AluSx SINE Alu -2 310 1 259 298 107 8 chr21 29454239 29454370 -15453200 + MIR SINE MIR 110 253 -9 1790 194 131 14 chr21 29454419 29454872 -15452698 + L1MB5 LINE L1 5671 6174 0 189 192 0 0 chr21 29455115 29455177 -15452393 + (TA)n Simple_repeat Simple_repeat 2 66 -8 1378 164 88 11 chr21 29455177 29455439 -15452131 - AluJb SINE Alu -30 282 1 189 192 0 0 chr21 29455439 29455449 -15452121 + (TA)n Simple_repeat Simple_repeat 65 74 0 190 200 86 71 chr21 29456136 29456206 -15451364 + L3 LINE CR1 1099 1169 -408 2366 102 0 0 chr21 29457091 29457395 -15450175 - AluSx SINE Alu -8 304 1 2315 64 7 34 chr21 29458054 29458349 -15449221 - AluSc SINE Alu -22 287 1 390 91 0 0 chr21 29458359 29458414 -15449156 + (A)n Simple_repeat Simple_repeat 1 55 0 1973 233 57 74 chr21 29458417 29458860 -15448710 + L1ME3A LINE L1 5479 5907 -263 3136 71 0 8 chr21 29458860 29459238 -15448332 - THE1C LTR MaLR 0 375 1 1973 233 57 74 chr21 29459238 29459493 -15448077 + L1ME3A LINE L1 5907 6165 -5 2297 88 0 10 chr21 29459796 29460091 -15447479 - AluSx SINE Alu -20 292 1 21 0 0 0 chr21 29460412 29460433 -15447137 + AT_rich Low_complexity Low_complexity 1 21 0 1901 116 3 34 chr21 29460676 29460970 -15446600 - AluSx SINE Alu -25 287 3 910 92 8 0 chr21 29460971 29461090 -15446480 - AluSq/x SINE Alu -176 136 17 844 232 144 32 chr21 29461096 29461437 -15446133 + MLT1I LTR MaLR 28 406 -3 868 221 26 40 chr21 29461770 29461872 -15445698 + L1MB3 LINE L1 5961 6063 -120 2043 131 14 0 chr21 29461872 29462163 -15445407 + AluSx SINE Alu 1 295 -17 868 221 26 40 chr21 29462163 29462286 -15445284 + L1MB3 LINE L1 6063 6183 0 24 0 0 0 chr21 29462286 29462310 -15445260 + AT_rich Low_complexity Low_complexity 1 24 0 2141 115 11 0 chr21 29463564 29463851 -15443719 + AluSq SINE Alu 1 290 -23 588 251 55 47 chr21 29464173 29464448 -15443122 + HAL1 LINE L1 783 1059 -1448 471 194 0 0 chr21 29464453 29464556 -15443014 + GA-rich Low_complexity Low_complexity 2 104 0 1891 168 0 3 chr21 29464642 29464939 -15442631 + AluJb SINE Alu 6 301 -11 240 100 0 0 chr21 29464941 29464971 -15442599 + U6 snRNA snRNA 1 30 -77 365 269 245 14 chr21 29464976 29465188 -15442382 + HAL1 LINE L1 1411 1671 -836 882 239 105 50 chr21 29465398 29465854 -15441716 + HAL1 LINE L1 2023 2503 -4 407 333 71 24 chr21 29466590 29466887 -15440683 + L3 LINE CR1 662 972 -605 186 303 32 58 chr21 29467044 29467232 -15440338 + L3 LINE CR1 1224 1406 -171 1829 162 3 26 chr21 29469265 29469568 -15438002 - AluJb SINE Alu -16 296 1 789 276 102 27 chr21 29469588 29470221 -15437349 + L1ME LINE L1 5048 5747 -423 507 186 62 0 chr21 29470232 29470329 -15437241 - MER94 DNA DNA -3 131 29 1930 259 20 57 chr21 29470366 29470999 -15436571 + L1M4 LINE L1 19 628 -5914 2525 84 26 6 chr21 29470999 29471343 -15436227 + THE1B LTR MaLR 1 351 -13 2308 231 24 60 chr21 29471349 29471863 -15435707 + L1M4 LINE L1 599 1081 -5461 1680 200 7 17 chr21 29471863 29472153 -15435417 + AluJo SINE Alu 1 287 -25 2308 231 24 60 chr21 29472153 29472360 -15435210 + L1M4 LINE L1 1081 1294 -5248 1480 153 4 27 chr21 29472376 29472637 -15434933 + AluJo SINE Alu 1 255 -57 698 274 6 0 chr21 29472644 29472819 -15434751 + L1M4 LINE L1 715 890 -5652 464 124 0 34 chr21 29472940 29473029 -15434541 + AluS SINE Alu 225 310 0 1235 188 91 170 chr21 29473032 29473043 -15434527 + L1M4 LINE L1 1339 1349 -5297 2278 113 3 19 chr21 29473043 29473348 -15434222 + AluSp SINE Alu 1 302 -11 301 85 17 17 chr21 29473348 29473407 -15434163 + (TA)n Simple_repeat Simple_repeat 1 59 0 2278 113 3 19 chr21 29473407 29473419 -15434151 + AluSp SINE Alu 302 313 0 1235 188 91 170 chr21 29473419 29474067 -15433503 + L1M4 LINE L1 1349 1946 -4700 323 259 66 9 chr21 29474122 29474282 -15433288 + L1ME3A LINE L1 6000 6162 0 2089 131 0 3 chr21 29474581 29474871 -15432699 + AluSx SINE Alu 1 289 -23 225 0 0 0 chr21 29475511 29475536 -15432034 + (A)n Simple_repeat Simple_repeat 1 25 0 1707 168 35 3 chr21 29477177 29477462 -15430108 + AluJo SINE Alu 2 295 -17 1851 163 7 13 chr21 29477523 29477829 -15429741 - AluJo SINE Alu -3 309 6 969 169 40 0 chr21 29478095 29478272 -15429298 + MER20 DNA MER1_type 36 219 0 185 176 98 20 chr21 29479153 29479204 -15428366 - MER5A DNA MER1_type -5 184 130 2067 168 52 0 chr21 29479220 29479584 -15427986 + MLT1B LTR MaLR 8 390 0 201 255 20 0 chr21 29479584 29479635 -15427935 - MER5A DNA MER1_type -66 123 72 1843 141 0 0 chr21 29480045 29480314 -15427256 + AluJo SINE Alu 44 312 0 508 241 30 89 chr21 29480320 29480523 -15427047 + MLT1J LTR MaLR 320 510 -1 248 262 75 56 chr21 29481086 29481156 -15426414 - MARNA DNA Mariner -9 577 503 313 225 0 0 chr21 29481156 29481236 -15426334 + MER116 DNA Mariner 1 80 0 248 262 75 56 chr21 29481236 29481272 -15426298 - MARNA DNA Mariner -83 503 469 258 200 43 14 chr21 29481418 29481488 -15426082 + L1MB1 LINE L1 5990 6061 -107 759 135 48 8 chr21 29481500 29481626 -15425944 - FLAM_C SINE Alu -2 131 1 586 227 25 0 chr21 29481627 29481746 -15425824 + L1MB1 LINE L1 6045 6166 -2 21 0 0 0 chr21 29482797 29482818 -15424752 + AT_rich Low_complexity Low_complexity 1 21 0 1912 144 0 32 chr21 29484550 29484863 -15422707 + AluSx SINE Alu 1 303 -9 360 0 0 0 chr21 29486727 29486767 -15420803 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 260 40 73 chr21 29486854 29487031 -15420539 + MIR SINE MIR 92 262 0 244 287 89 10 chr21 29488313 29488414 -15419156 + L2 LINE L2 3159 3267 -5 2268 71 54 0 chr21 29488688 29488968 -15418602 + AluSc SINE Alu 1 295 -14 1820 179 3 13 chr21 29489262 29489575 -15417995 - AluJo SINE Alu -2 310 1 953 172 25 0 chr21 29489606 29489795 -15417775 + FAM SINE Alu 1 60 0 832 189 63 5 chr21 29489886 29490076 -15417494 + Charlie1 DNA MER1_type 2342 2542 -219 981 193 19 34 chr21 29490090 29490297 -15417273 - AluJo SINE Alu -26 286 83 200 176 15 0 chr21 29490313 29490381 -15417189 + (TA)n Simple_repeat Simple_repeat 2 70 0 2005 103 0 4 chr21 29490382 29490645 -15416925 - AluSx SINE Alu -18 294 33 276 280 0 0 chr21 29490814 29490889 -15416681 + A-rich Low_complexity Low_complexity 1 75 0 2286 102 0 3 chr21 29491568 29491862 -15415708 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr21 29493073 29493105 -15414465 + AT_rich Low_complexity Low_complexity 1 32 0 196 215 15 77 chr21 29493131 29493196 -15414374 + L2 LINE L2 3248 3308 -5 228 325 44 19 chr21 29493339 29493499 -15414071 - MIR SINE MIR -50 212 49 1005 186 45 0 chr21 29494264 29494463 -15413107 - L1PA16 LINE L1 -3 6163 5956 413 267 158 6 chr21 29494561 29494726 -15412844 - MIR SINE MIR -15 247 58 443 214 0 20 chr21 29495141 29495239 -15412331 - FLAM_A SINE Alu -6 136 41 415 92 0 0 chr21 29495338 29495403 -15412167 - AluSp/q SINE Alu -6 307 243 261 214 157 22 chr21 29495464 29495553 -15412017 - MIR SINE MIR -113 149 49 425 236 93 36 chr21 29498310 29498450 -15409120 - L2 LINE L2 -3 3310 3163 2612 62 0 0 chr21 29499802 29500109 -15407461 - AluY SINE Alu -4 307 1 1626 87 50 0 chr21 29500758 29500977 -15406593 - MER30 DNA MER1_type 0 230 1 706 243 81 42 chr21 29500999 29501357 -15406213 + L2 LINE L2 2922 3293 -20 1743 116 119 85 chr21 29502113 29502466 -15405104 - MER47A DNA MER2_type 0 366 2 509 220 106 0 chr21 29502655 29502796 -15404774 + L1MD2 LINE L1 6194 6349 -10 204 226 0 0 chr21 29503195 29503248 -15404322 + A-rich Low_complexity Low_complexity 1 53 0 315 343 28 6 chr21 29503424 29503602 -15403968 + L1ME LINE L1 641 822 -5574 710 260 58 85 chr21 29503612 29504012 -15403558 + L1ME LINE L1 748 1136 -5273 2017 115 21 7 chr21 29504076 29504363 -15403207 + AluSx SINE Alu 2 292 -20 2064 116 0 50 chr21 29504965 29505283 -15402287 + AluSx SINE Alu 1 302 -10 4240 72 14 14 chr21 29507173 29507502 -15400068 + MER41A LTR ERV1 1 332 -222 2002 104 4 0 chr21 29507502 29507761 -15399809 + AluSq SINE Alu 1 260 -53 4240 72 14 14 chr21 29507761 29507985 -15399585 + MER41A LTR ERV1 331 554 0 201 132 0 0 chr21 29509251 29509289 -15398281 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 298 283 83 62 chr21 29509630 29509870 -15397700 + MIR SINE MIR 8 252 -10 297 155 0 0 chr21 29510128 29510186 -15397384 + (CA)n Simple_repeat Simple_repeat 1 58 0 2316 124 8 24 chr21 29510302 29510672 -15396898 + THE1B LTR MaLR 1 364 0 1510 152 112 7 chr21 29510970 29511246 -15396324 + AluJo SINE Alu 1 305 -7 644 169 34 8 chr21 29511773 29511958 -15395612 + (TGGA)n Simple_repeat Simple_repeat 1 189 0 271 133 48 24 chr21 29511969 29512052 -15395518 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 2155 127 10 10 chr21 29513645 29513975 -15393595 - AluSx SINE Alu 0 312 5 1981 108 0 25 chr21 29514652 29514929 -15392641 - AluSx SINE Alu -8 304 35 2111 113 3 3 chr21 29515716 29515999 -15391571 + AluSx SINE Alu 2 284 -28 216 67 0 0 chr21 29516001 29516031 -15391539 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 727 140 0 0 chr21 29516430 29516537 -15391033 + AluJb SINE Alu 12 118 -194 21 0 0 0 chr21 29516541 29516562 -15391008 + AT_rich Low_complexity Low_complexity 1 21 0 1532 212 0 17 chr21 29516563 29516856 -15390714 + AluJo SINE Alu 1 288 -24 637 217 19 25 chr21 29517184 29517345 -15390225 + MER104 DNA Tc2 4 163 -17 1952 184 34 3 chr21 29518413 29518767 -15388803 - MLT1A1 LTR MaLR 0 365 1 2117 132 0 40 chr21 29520489 29520814 -15386756 + AluSx SINE Alu 1 312 0 2113 117 4 0 chr21 29521645 29521960 -15385610 - AluSx SINE Alu 0 316 1 415 319 92 6 chr21 29522151 29522382 -15385188 + MIR SINE MIR 3 256 -6 2392 99 0 0 chr21 29522504 29522806 -15384764 - AluSx SINE Alu -9 303 2 2001 126 0 63 chr21 29522808 29523126 -15384444 - AluSx SINE Alu -14 298 1 951 134 0 0 chr21 29523127 29523261 -15384309 - AluSq/x SINE Alu -178 134 1 1859 176 37 23 chr21 29523262 29523615 -15383955 - MLT2D LTR ERVL -54 360 3 213 246 16 16 chr21 29524651 29524712 -15382858 + MIR SINE MIR 81 141 -121 2509 76 0 0 chr21 29525326 29525627 -15381943 + AluY SINE Alu 1 301 -10 1984 104 56 3 chr21 29525948 29526236 -15381334 - AluSq SINE Alu -10 303 1 2331 105 0 0 chr21 29526804 29527100 -15380470 - AluY SINE Alu -15 296 1 1287 160 98 52 chr21 29527323 29527542 -15380028 + L1MB3 LINE L1 5857 6093 -90 2122 93 39 0 chr21 29527542 29527821 -15379749 - AluSx SINE Alu -22 290 1 1287 160 98 52 chr21 29527821 29527888 -15379682 + L1MB3 LINE L1 6093 6156 -27 297 0 0 0 chr21 29528873 29528906 -15378664 + (TG)n Simple_repeat Simple_repeat 1 33 0 321 174 0 0 chr21 29528912 29528981 -15378589 + GA-rich Low_complexity Low_complexity 2 70 0 347 341 8 0 chr21 29529837 29529969 -15377601 + MIR SINE MIR 26 158 -104 2323 129 91 5 chr21 29530110 29530496 -15377074 + MSTA LTR MaLR 1 419 -9 2180 116 0 0 chr21 29531695 29532014 -15375556 + AluSq SINE Alu 1 319 0 263 208 54 0 chr21 29532014 29532144 -15375426 + (TA)n Simple_repeat Simple_repeat 1 137 0 2457 103 0 0 chr21 29533833 29534145 -15373425 + AluSx SINE Alu 1 312 0 2162 98 0 42 chr21 29534824 29535131 -15372439 - AluSx SINE Alu -18 294 1 22 56 0 0 chr21 29535232 29535268 -15372302 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr21 29535550 29535576 -15371994 + AT_rich Low_complexity Low_complexity 1 26 0 390 216 11 0 chr21 29536132 29536220 -15371350 + L1MC4 LINE L1 6921 7009 -1033 1256 184 5 0 chr21 29536227 29536433 -15371137 + AluJo SINE Alu 88 294 -18 1299 240 16 56 chr21 29536435 29536963 -15370607 + L1MC4 LINE L1 7001 7666 -376 200 287 176 0 chr21 29537637 29537745 -15369825 + MIR SINE MIR 27 153 -55 1718 161 3 61 chr21 29538088 29538399 -15369171 + AluJb SINE Alu 1 293 -19 327 272 61 0 chr21 29538422 29538536 -15369034 + MIR SINE MIR 81 201 -61 39 92 0 0 chr21 29538546 29538655 -15368915 + AT_rich Low_complexity Low_complexity 1 109 0 180 292 92 0 chr21 29538694 29538759 -15368811 + L2 LINE L2 3232 3302 -11 2049 130 3 0 chr21 29539314 29539628 -15367942 + AluSx SINE Alu 1 315 0 804 262 111 53 chr21 29540197 29540613 -15366957 + MLT1J2 LTR MaLR 2 441 -9 2363 135 35 33 chr21 29541865 29542406 -15365164 + MLT2A2 LTR ERVL 1 546 -8 329 284 69 1 chr21 29542795 29542931 -15364639 - MIR SINE MIR -64 144 1 21 0 0 0 chr21 29543678 29543699 -15363871 + AT_rich Low_complexity Low_complexity 1 21 0 2008 130 7 7 chr21 29543720 29544013 -15363557 - AluSx SINE Alu -18 294 2 299 248 8 74 chr21 29544207 29544328 -15363242 - MIR SINE MIR -48 214 102 1996 101 16 57 chr21 29545229 29545370 -15362200 + AluSq SINE Alu 1 146 -167 2524 48 0 3 chr21 29545370 29545663 -15361907 + AluY SINE Alu 1 292 -19 1996 101 16 57 chr21 29545663 29545837 -15361733 + AluSq SINE Alu 146 303 -10 2204 87 11 0 chr21 29545837 29546124 -15361446 + AluSg SINE Alu 1 290 -20 2339 90 7 0 chr21 29547310 29547611 -15359959 + AluSp SINE Alu 1 303 -10 1966 158 0 13 chr21 29547635 29547951 -15359619 + AluSx SINE Alu 1 312 0 1926 142 7 23 chr21 29548239 29548542 -15359028 - AluSx SINE Alu -14 298 1 860 196 0 29 chr21 29548995 29549168 -15358402 - FRAM SINE Alu -11 165 1 1978 177 35 48 chr21 29549387 29549634 -15357936 - L1M3 LINE L1 -469 5711 5471 2494 75 0 7 chr21 29549634 29549940 -15357630 + AluY SINE Alu 1 304 -7 1978 177 35 48 chr21 29549940 29550127 -15357443 - L1M3 LINE L1 -709 5471 5283 1651 136 134 91 chr21 29550129 29550600 -15356970 + L1MB4 LINE L1 5690 6180 0 2104 117 14 0 chr21 29550849 29551139 -15356431 + AluSx SINE Alu 1 294 -18 873 169 0 0 chr21 29551144 29551274 -15356296 + FRAM SINE Alu 2 131 -45 2224 92 7 0 chr21 29551472 29551788 -15355782 - AluSq SINE Alu 0 318 1 1846 99 25 4 chr21 29551914 29552157 -15355413 + AluSq SINE Alu 1 248 -65 225 83 0 0 chr21 29552172 29552208 -15355362 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 262 327 34 24 chr21 29552526 29552731 -15354839 - MIR SINE MIR -40 222 16 2425 83 0 3 chr21 29553145 29553447 -15354123 + AluSc SINE Alu 1 301 -8 904 183 37 16 chr21 29553476 29553563 -15354007 + L1MC2 LINE L1 5883 5967 -377 1806 131 47 44 chr21 29553563 29553686 -15353884 + AluJo SINE Alu 1 122 -190 2282 113 0 0 chr21 29553686 29553988 -15353582 + AluSx SINE Alu 1 302 -10 1806 131 47 44 chr21 29553988 29554162 -15353408 + AluJo SINE Alu 122 299 -13 904 183 37 16 chr21 29554162 29554265 -15353305 + L1MC2 LINE L1 5967 6077 -267 805 96 0 0 chr21 29554396 29554500 -15353070 + AluSg/x SINE Alu 189 292 -20 504 287 144 6 chr21 29554560 29554741 -15352829 - MIR SINE MIR 0 262 57 2003 125 3 26 chr21 29555135 29555439 -15352131 + AluJb SINE Alu 1 297 -15 2260 113 0 0 chr21 29555523 29555823 -15351747 + AluSx SINE Alu 1 300 -12 2151 118 6 19 chr21 29557495 29557810 -15349760 + AluSx SINE Alu 1 311 -1 217 271 65 9 chr21 29558189 29558296 -15349274 + L2 LINE L2 2951 3063 -250 493 180 30 40 chr21 29558408 29558508 -15349062 - MER2 DNA MER2_type -10 335 237 1843 166 17 7 chr21 29558510 29558681 -15348889 - AluJb SINE Alu -14 298 121 2159 61 7 0 chr21 29558681 29558960 -15348610 - L1PA8 LINE L1 -1 6171 5891 1843 166 17 7 chr21 29558960 29559083 -15348487 - AluJb SINE Alu -191 121 1 1175 162 51 47 chr21 29559083 29559318 -15348252 - MER2 DNA MER2_type -107 238 3 2085 147 11 22 chr21 29560019 29560374 -15347196 - L1MC1 LINE L1 -16 6317 5967 1004 91 103 24 chr21 29560376 29560541 -15347029 - L1MC1 LINE L1 -478 5855 5678 1925 121 4 7 chr21 29560563 29560843 -15346727 - AluSx SINE Alu -1 311 33 725 192 0 0 chr21 29563091 29563211 -15344359 + FLAM_A SINE Alu 2 121 -12 25 31 0 0 chr21 29563213 29563245 -15344325 + AT_rich Low_complexity Low_complexity 1 32 0 245 289 77 10 chr21 29563369 29563473 -15344097 + MIR SINE MIR 80 190 -72 1840 169 0 7 chr21 29563576 29563877 -15343693 - AluJb SINE Alu -13 299 1 736 224 0 12 chr21 29564427 29564588 -15342982 - FRAM SINE Alu -7 159 1 2313 100 27 0 chr21 29565568 29565867 -15341703 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr21 29566626 29566647 -15340923 + (T)n Simple_repeat Simple_repeat 1 21 0 293 320 20 10 chr21 29567161 29567261 -15340309 + MIR SINE MIR 6 106 -156 2047 128 7 0 chr21 29567628 29567967 -15339603 - AluSx SINE Alu 0 341 1 768 165 0 0 chr21 29570680 29570801 -15336769 - FLAM_A SINE Alu -12 121 1 382 294 8 8 chr21 29571386 29571505 -15336065 - MIR SINE MIR -116 146 28 410 289 98 0 chr21 29572024 29572228 -15335342 + L1M4 LINE L1 3184 3407 -2739 754 189 0 0 chr21 29572310 29572442 -15335128 + FLAM_A SINE Alu 10 141 -1 278 214 11 0 chr21 29575562 29575651 -15331919 + (TA)n Simple_repeat Simple_repeat 2 91 0 2138 122 3 3 chr21 29575810 29576105 -15331465 + AluSx SINE Alu 5 299 -13 1173 172 33 14 chr21 29576139 29576354 -15331216 + MER20 DNA MER1_type 1 219 0 3046 113 5 0 chr21 29580543 29580969 -15326601 + MSTA LTR MaLR 1 428 0 193 351 26 0 chr21 29581378 29581455 -15326115 - MIR SINE MIR -84 124 46 2277 114 0 0 chr21 29581923 29582220 -15325350 + AluSx SINE Alu 1 297 -15 1357 159 21 8 chr21 29582258 29582497 -15325073 + L1MB4 LINE L1 5683 5924 -256 773 120 0 30 chr21 29582500 29582633 -15324937 + L1MB4 LINE L1 6052 6180 0 21 0 0 0 chr21 29582680 29582701 -15324869 + AT_rich Low_complexity Low_complexity 1 21 0 1849 163 31 0 chr21 29582707 29582830 -15324740 + AluSx SINE Alu 1 119 -193 276 30 0 0 chr21 29582830 29582863 -15324707 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1849 163 31 0 chr21 29582863 29583028 -15324542 + AluSx SINE Alu 119 298 -14 267 194 81 0 chr21 29583555 29583617 -15323953 + MIR SINE MIR 117 183 -79 594 284 19 24 chr21 29583639 29583847 -15323723 - MIR SINE MIR -8 254 48 2227 117 7 0 chr21 29583940 29584274 -15323296 - AluSx SINE Alu 0 336 1 509 244 65 69 chr21 29585534 29585647 -15321923 + L2 LINE L2 3008 3120 -193 2023 123 7 13 chr21 29585647 29585989 -15321581 - AluSx SINE Alu 0 312 1 509 244 65 69 chr21 29585989 29586166 -15321404 + L2 LINE L2 3120 3297 -16 1909 176 28 8 chr21 29586551 29586909 -15320661 + MLT1A1 LTR MaLR 1 365 0 752 158 0 16 chr21 29586973 29587100 -15320470 + AluJo SINE Alu 3 127 -175 2560 245 175 25 chr21 29587136 29588140 -15319430 + L2 LINE L2 1017 2171 -1143 322 328 123 16 chr21 29588150 29588403 -15319167 + LTR16A LTR ERVL 2 281 -169 1502 265 151 50 chr21 29588512 29589544 -15318026 + L2 LINE L2 2176 3313 0 1908 137 27 3 chr21 29589650 29589943 -15317627 + AluSg SINE Alu 1 300 -10 609 52 0 0 chr21 29589943 29590020 -15317550 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 704 240 85 41 chr21 29590041 29590383 -15317187 + L1ME3A LINE L1 1548 1904 -4636 200 33 0 33 chr21 29590408 29590438 -15317132 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1138 269 89 39 chr21 29590669 29591459 -15316111 + L1ME3A LINE L1 5524 6363 -201 253 263 145 62 chr21 29591506 29591685 -15315885 + L1ME3A LINE L1 6356 6549 -15 411 21 0 0 chr21 29591975 29592023 -15315547 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 262 195 24 24 chr21 29592044 29592126 -15315444 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 812 211 6 30 chr21 29592149 29592315 -15315255 + AluJo SINE Alu 134 295 -17 2105 126 0 0 chr21 29592583 29592904 -15314666 - AluSx SINE Alu 0 321 1 295 303 96 37 chr21 29593144 29593526 -15314044 + MLT1K LTR MaLR 128 570 -18 477 104 0 0 chr21 29594798 29594875 -15312695 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 1115 238 113 0 chr21 29594988 29595290 -15312280 - MER58B DNA MER1_type -3 338 3 310 262 14 76 chr21 29595455 29595517 -15312053 + L2 LINE L2 3173 3237 -76 2551 55 3 10 chr21 29595517 29595827 -15311743 - AluY SINE Alu -3 308 1 310 262 14 76 chr21 29595827 29595909 -15311661 + L2 LINE L2 3237 3308 -5 2141 87 52 3 chr21 29595958 29596247 -15311323 + AluSc SINE Alu 1 303 -6 2152 123 0 3 chr21 29596762 29597055 -15310515 - AluSx SINE Alu -20 292 1 198 118 0 0 chr21 29597220 29597254 -15310316 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 309 197 0 0 chr21 29597262 29597328 -15310242 + GA-rich Low_complexity Low_complexity 2 67 0 2108 74 48 0 chr21 29599095 29599389 -15308181 + AluY SINE Alu 1 307 0 1460 201 47 41 chr21 29599445 29599528 -15308042 + MLT1A1 LTR MaLR 1 82 -283 2118 126 0 3 chr21 29599528 29599853 -15307717 + L1MA5 LINE L1 5977 6300 0 1460 201 47 41 chr21 29599853 29599883 -15307687 + MLT1A1 LTR MaLR 82 110 -255 1811 69 14 0 chr21 29599883 29600100 -15307470 + AluSg SINE Alu 39 258 -52 1460 201 47 41 chr21 29600100 29600348 -15307222 + MLT1A1 LTR MaLR 110 365 0 276 217 57 28 chr21 29600348 29600454 -15307116 + L1MC5 LINE L1 7539 7647 -314 212 250 0 0 chr21 29600595 29600643 -15306927 + (TG)n Simple_repeat Simple_repeat 2 49 0 307 223 0 107 chr21 29600662 29600765 -15306805 + L1MC5 LINE L1 7818 7909 -52 546 253 18 35 chr21 29600841 29601011 -15306559 + Charlie8 DNA MER1_type 16 182 -2235 361 246 53 9 chr21 29601441 29601555 -15306015 - MIR3 SINE MIR -4 204 86 1322 156 50 100 chr21 29602826 29602916 -15304654 + AluJb SINE Alu 1 94 -218 2396 92 3 0 chr21 29602916 29603221 -15304349 + AluSp SINE Alu 6 311 -2 1322 156 50 100 chr21 29603221 29603431 -15304139 + AluJb SINE Alu 94 286 -26 1670 97 0 0 chr21 29603447 29603664 -15303906 - THE1A LTR MaLR 0 355 139 247 293 12 0 chr21 29603684 29603766 -15303804 - L2 LINE L2 -6 3307 3225 250 269 15 0 chr21 29605468 29605535 -15302035 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2327 105 0 10 chr21 29605883 29606196 -15301374 + AluSg SINE Alu 1 310 0 1893 125 0 66 chr21 29606987 29607315 -15300255 - AluSx SINE Alu 0 308 1 189 346 206 13 chr21 29607331 29607860 -15299710 - L3 LINE CR1 -199 1378 748 2398 102 3 0 chr21 29607991 29608294 -15299276 + AluSp SINE Alu 1 304 -9 1927 148 0 66 chr21 29608831 29609096 -15298474 - MER2 DNA MER2_type -1 343 107 2190 119 3 13 chr21 29609096 29609408 -15298162 - AluSx SINE Alu -3 309 1 1927 148 0 66 chr21 29609408 29609508 -15298062 - MER2 DNA MER2_type -237 107 2 1923 178 62 30 chr21 29609668 29610107 -15297463 + L1MB8 LINE L1 5652 6104 -74 1792 139 31 14 chr21 29610117 29610404 -15297166 + AluSx SINE Alu 1 292 -20 2192 96 7 0 chr21 29610410 29610691 -15296879 + AluSq SINE Alu 12 294 -19 21 57 0 0 chr21 29610692 29610727 -15296843 + AT_rich Low_complexity Low_complexity 1 35 0 285 195 0 49 chr21 29610727 29610809 -15296761 + L1MB8 LINE L1 6101 6178 0 309 350 109 7 chr21 29610982 29611119 -15296451 + MIR SINE MIR 16 166 -96 947 113 20 13 chr21 29611307 29611458 -15296112 + MLT1A1 LTR MaLR 1 152 -213 1382 143 0 48 chr21 29611461 29611522 -15296048 + AluJb SINE Alu 84 146 -166 2238 117 0 0 chr21 29611522 29611820 -15295750 + AluSx SINE Alu 1 298 -14 1382 143 0 48 chr21 29611820 29611989 -15295581 + AluJb SINE Alu 146 303 -9 779 221 113 10 chr21 29611990 29612185 -15295385 + MLT1A1 LTR MaLR 160 374 0 2233 106 0 0 chr21 29613093 29613385 -15294185 + AluSx SINE Alu 1 292 -20 182 341 56 40 chr21 29613982 29614108 -15293462 - MIR SINE MIR -65 143 16 1423 165 4 40 chr21 29614457 29614730 -15292840 + AluJo SINE Alu 40 302 -10 616 158 47 3 chr21 29615078 29615198 -15292372 + MSTA LTR MaLR 1 144 -313 1405 118 5 5 chr21 29615199 29615410 -15292160 - AluSq SINE Alu -15 298 88 66 14 0 0 chr21 29615916 29615989 -15291581 + AT_rich Low_complexity Low_complexity 1 73 0 197 86 0 69 chr21 29616003 29616061 -15291509 + (TTAA)n Simple_repeat Simple_repeat 4 57 0 35 24 0 0 chr21 29616086 29616128 -15291442 + AT_rich Low_complexity Low_complexity 1 42 0 1930 110 31 54 chr21 29617331 29617648 -15289922 - AluSq SINE Alu -3 310 1 1490 166 24 0 chr21 29618088 29618341 -15289229 + MSTA LTR MaLR 158 416 -12 423 0 0 0 chr21 29618348 29618395 -15289175 + (CA)n Simple_repeat Simple_repeat 2 48 0 1652 172 47 0 chr21 29618494 29618615 -15288955 + AluJo SINE Alu 1 115 -197 227 31 31 0 chr21 29618615 29618647 -15288923 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1652 172 47 0 chr21 29618647 29618821 -15288749 + AluJo SINE Alu 115 310 -2 484 227 15 38 chr21 29618860 29618993 -15288577 + MIR SINE MIR 106 234 -28 1255 224 26 45 chr21 29619085 29619329 -15288241 - MER58B DNA MER1_type -2079 341 102 1899 103 26 0 chr21 29619329 29619642 -15287928 - AluSx SINE Alu 0 322 3 1255 224 26 45 chr21 29619642 29619709 -15287861 - MER58B DNA MER1_type -2318 102 35 1432 241 93 36 chr21 29621165 29621478 -15286092 + MER115 DNA AcHobo 206 553 -140 2254 96 0 0 chr21 29621478 29621781 -15285789 + AluSx SINE Alu 1 303 -9 1432 241 93 36 chr21 29621781 29621906 -15285664 + MER115 DNA AcHobo 553 669 -24 2447 132 3 0 chr21 29621977 29622341 -15285229 + MER47A DNA MER2_type 2 366 0 2388 75 3 0 chr21 29622424 29622729 -15284841 + AluSq SINE Alu 1 306 -7 2061 166 69 15 chr21 29622751 29623091 -15284479 + MSTB LTR MaLR 1 368 -58 2027 133 0 0 chr21 29623091 29623391 -15284179 - AluSx SINE Alu -12 300 1 2061 166 69 15 chr21 29623391 29623454 -15284116 + MSTB LTR MaLR 368 426 0 312 133 167 56 chr21 29624027 29624117 -15283453 + L1ME4a LINE L1 6021 6120 -1 3391 197 8 5 chr21 29624161 29624822 -15282748 + L1MC1 LINE L1 5667 6329 -4 345 24 0 0 chr21 29624823 29624865 -15282705 + (TC)n Simple_repeat Simple_repeat 1 42 0 * 423 0 0 0 chr21 29624864 29624911 -15282659 + (CA)n Simple_repeat Simple_repeat 1 47 0 2068 126 0 0 chr21 29625091 29625385 -15282185 + AluSx SINE Alu 1 294 -18 544 250 70 40 chr21 29626429 29626629 -15280941 + L2 LINE L2 2911 3116 -197 269 227 31 16 chr21 29626672 29626800 -15280770 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 2047 105 7 3 chr21 29626803 29627098 -15280472 + AluSx SINE Alu 1 296 -16 193 349 142 12 chr21 29627303 29627472 -15280098 - MIR SINE MIR -6 256 66 198 0 0 0 chr21 29628294 29628316 -15279254 + (A)n Simple_repeat Simple_repeat 1 22 0 903 109 0 0 chr21 29629033 29629161 -15278409 + AluSq/x SINE Alu 5 132 -180 23 0 0 0 chr21 29629168 29629191 -15278379 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 29629382 29629403 -15278167 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 29629499 29629527 -15278043 + AT_rich Low_complexity Low_complexity 1 28 0 2196 104 3 10 chr21 29630256 29630565 -15277005 - AluSx SINE Alu -5 307 1 335 279 0 0 chr21 29630612 29630691 -15276879 + L2 LINE L2 3191 3269 -44 * 519 193 167 39 chr21 29630683 29630872 -15276698 - MIR SINE MIR -50 158 8 1458 69 5 0 chr21 29630944 29631132 -15276438 + AluSp SINE Alu 1 189 -124 269 56 28 0 chr21 29631161 29631232 -15276338 + AluSp/q SINE Alu 248 319 0 1629 150 51 7 chr21 29631789 29632063 -15275507 + AluJo SINE Alu 14 299 -13 2178 90 3 3 chr21 29632070 29632371 -15275199 + AluSc SINE Alu 3 303 -6 2194 74 0 23 chr21 29632799 29633098 -15274472 + AluY SINE Alu 1 292 -19 2250 75 0 7 chr21 29633287 29633582 -15273988 - AluSc SINE Alu -16 293 1 249 322 44 11 chr21 29633956 29634046 -15273524 - L2 LINE L2 -90 3182 3090 687 184 16 0 chr21 29634670 29634795 -15272775 - FLAM_A SINE Alu -8 134 8 700 181 55 24 chr21 29634810 29634990 -15272580 + L1MD2 LINE L1 6191 7995 0 1607 163 3 20 chr21 29635096 29635396 -15272174 + AluJo SINE Alu 1 295 -17 2255 117 25 33 chr21 29635605 29635972 -15271598 - THE1B LTR MaLR 0 364 1 395 238 143 119 chr21 29636426 29636678 -15270892 + MIR SINE MIR 5 262 0 2131 101 3 7 chr21 29637765 29638073 -15269497 - AluSx SINE Alu -5 307 1 734 193 80 6 chr21 29638912 29639088 -15268482 + MER5A DNA MER1_type 1 189 0 2257 90 3 0 chr21 29639243 29639543 -15268027 - AluSg SINE Alu -9 301 1 180 97 0 0 chr21 29640222 29640253 -15267317 + (TG)n Simple_repeat Simple_repeat 1 31 0 454 302 6 3 chr21 29640290 29640651 -15266919 + (TG)n Simple_repeat Simple_repeat 1 362 0 380 326 6 0 chr21 29640665 29640843 -15266727 + (TG)n Simple_repeat Simple_repeat 2 180 0 249 189 33 0 chr21 29640843 29640933 -15266637 + GA-rich Low_complexity Low_complexity 1 93 0 521 281 72 59 chr21 29641463 29641607 -15265963 - MER58A DNA MER1_type -2196 224 74 2128 128 0 0 chr21 29641607 29641911 -15265659 - AluSx SINE Alu -8 304 1 521 281 72 59 chr21 29641911 29641987 -15265583 - MER58A DNA MER1_type -2346 74 1 2403 193 22 26 chr21 29642073 29642494 -15265076 + L1PB4 LINE L1 5646 6066 -90 2224 116 17 46 chr21 29642494 29642635 -15264935 - MER1B DNA MER1_type -2373 337 193 2168 97 7 13 chr21 29642635 29642944 -15264626 + AluSx SINE Alu 1 307 -5 2224 116 17 46 chr21 29642944 29643148 -15264422 - MER1B DNA MER1_type -2517 193 2 2403 193 22 26 chr21 29643148 29643224 -15264346 + L1PB4 LINE L1 6066 6141 -15 2421 68 0 3 chr21 29643395 29643705 -15263865 - AluY SINE Alu -2 309 1 196 213 21 0 chr21 29644040 29644087 -15263483 - MIR SINE MIR -151 111 64 281 347 62 36 chr21 29646006 29646280 -15261290 + L2 LINE L2 2571 2851 -463 2828 93 23 2 chr21 29646461 29646860 -15260710 - L1PB2 LINE L1 0 6151 5745 2084 107 45 72 chr21 29647083 29647135 -15260435 - THE1B LTR MaLR 0 364 312 2033 109 7 3 chr21 29647135 29647457 -15260113 - AluSq SINE Alu 0 323 1 2084 107 45 72 chr21 29647457 29647777 -15259793 - THE1B LTR MaLR -52 312 1 402 293 180 44 chr21 29647889 29648209 -15259361 - L2 LINE L2 -244 3069 2689 2227 75 48 0 chr21 29648209 29648504 -15259066 + AluSx SINE Alu 1 309 -3 402 293 180 44 chr21 29648504 29648561 -15259009 - L2 LINE L2 -624 2689 2641 479 320 78 33 chr21 29649658 29649902 -15257668 + L1ME LINE L1 5534 5788 -333 2220 107 7 0 chr21 29649904 29650212 -15257358 + AluSq SINE Alu 1 310 -3 1016 183 129 57 chr21 29650872 29650975 -15256595 + MLT1C LTR MaLR 6 100 -367 2278 93 0 28 chr21 29650975 29651296 -15256274 + AluSx SINE Alu 1 312 0 1016 183 129 57 chr21 29651296 29651486 -15256084 + MLT1C LTR MaLR 100 326 -141 2214 112 33 15 chr21 29651486 29651817 -15255753 + MER1B DNA MER1_type 1 337 0 1016 183 129 57 chr21 29651817 29651839 -15255731 + MLT1C LTR MaLR 326 345 -122 1397 188 4 0 chr21 29651844 29652099 -15255471 + AluJo SINE Alu 1 256 -56 647 193 0 30 chr21 29652187 29652322 -15255248 + MLT1C LTR MaLR 337 467 0 252 320 41 21 chr21 29652516 29652613 -15254957 - MER5A DNA MER1_type 0 189 91 2535 52 0 0 chr21 29653226 29653533 -15254037 - AluY SINE Alu -4 307 1 326 286 24 0 chr21 29653683 29653767 -15253803 + L2 LINE L2 3134 3219 -53 243 0 0 0 chr21 29653836 29653863 -15253707 + (A)n Simple_repeat Simple_repeat 1 27 0 1620 138 44 35 chr21 29653863 29654182 -15253388 + L1MB8 LINE L1 5854 6175 -3 337 300 62 15 chr21 29654347 29654477 -15253093 - MIR3 SINE MIR -23 185 50 2183 144 41 47 chr21 29654512 29654909 -15252661 + L1MB2 LINE L1 5730 6126 -45 1925 122 0 7 chr21 29654909 29655220 -15252350 + AluSx SINE Alu 6 314 0 2183 144 41 47 chr21 29655220 29655264 -15252306 + L1MB2 LINE L1 6126 6169 -2 238 286 107 24 chr21 29655641 29655725 -15251845 - MER5A DNA MER1_type -87 102 12 396 167 0 0 chr21 29655751 29655823 -15251747 + CT-rich Low_complexity Low_complexity 1 72 0 1467 152 20 108 chr21 29655823 29656166 -15251404 - AluYb8 SINE Alu -3 315 3 1570 66 5 0 chr21 29656169 29656366 -15251204 - L1PB2 LINE L1 -7 6144 5947 1295 185 27 0 chr21 29657049 29657308 -15250262 - AluJo SINE Alu -1 311 46 2261 91 0 3 chr21 29657340 29657649 -15249921 + AluY SINE Alu 1 308 -3 1471 161 62 41 chr21 29657693 29657985 -15249585 + AluJo SINE Alu 1 298 -14 2076 114 23 0 chr21 29658115 29658414 -15249156 + AluSq SINE Alu 1 306 -7 1931 149 0 0 chr21 29658736 29659038 -15248532 + AluJb SINE Alu 1 302 -10 1545 146 0 8 chr21 29659130 29659414 -15248156 - AluJb SINE Alu 0 305 24 590 247 23 39 chr21 29659439 29659634 -15247936 + L1ME LINE L1 5553 5738 -383 248 321 28 0 chr21 29659670 29659779 -15247791 + MLT2E LTR ERVL 27 138 -490 308 244 58 0 chr21 29659974 29660060 -15247510 + MLT2F LTR ERVL 495 585 -78 2248 70 13 3 chr21 29660062 29660362 -15247208 + AluSq SINE Alu 1 303 -10 340 193 0 0 chr21 29660367 29660424 -15247146 - L1MC4 LINE L1 -1339 6703 6647 195 279 186 12 chr21 29661009 29661095 -15246475 + L2 LINE L2 2715 2815 -499 194 128 26 0 chr21 29661136 29661175 -15246395 + (TAA)n Simple_repeat Simple_repeat 1 40 0 205 400 19 31 chr21 29661180 29661340 -15246230 + L2 LINE L2 2898 3055 -217 846 172 0 43 chr21 29661438 29661601 -15245969 - MER5A DNA MER1_type -33 156 1 265 291 101 0 chr21 29661603 29661682 -15245888 + L2 LINE L2 3191 3277 -36 1242 176 128 43 chr21 29661741 29662063 -15245507 - MER7A DNA MER2_type -1 345 1 2374 85 0 0 chr21 29662227 29662534 -15245036 - AluSc SINE Alu -2 307 1 1840 136 24 0 chr21 29663939 29664226 -15243344 - AluJb SINE Alu -18 294 1 1049 264 41 10 chr21 29664278 29664573 -15242997 + L1MEc LINE L1 9 312 -6084 189 292 0 0 chr21 29665015 29665063 -15242507 + L2 LINE L2 3266 3313 0 2028 154 96 6 chr21 29665811 29666174 -15241396 + MSTD LTR MaLR 1 396 0 227 362 39 24 chr21 29666310 29666437 -15241133 + L2 LINE L2 3123 3251 -21 1811 133 31 20 chr21 29666491 29666785 -15240785 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr21 29666785 29666811 -15240759 + AT_rich Low_complexity Low_complexity 1 26 0 2040 141 0 0 chr21 29666811 29667117 -15240453 + AluSx SINE Alu 1 306 -6 239 231 176 28 chr21 29667273 29667382 -15240188 - L1ME4a LINE L1 -174 5947 5856 1460 156 100 4 chr21 29667382 29667652 -15239918 + AluJb SINE Alu 1 296 -16 239 231 176 28 chr21 29667652 29667669 -15239901 - L1ME4a LINE L1 -265 5856 5843 2182 133 138 5 chr21 29667669 29668046 -15239524 + MSTA LTR MaLR 1 427 -1 239 231 176 28 chr21 29668046 29668100 -15239470 - L1ME4a LINE L1 -278 5843 5739 2257 116 0 0 chr21 29668315 29668626 -15238944 - AluSx SINE Alu 0 312 2 946 210 0 59 chr21 29668853 29669072 -15238498 - MER20 DNA MER1_type -7 212 7 2010 141 0 0 chr21 29669415 29669721 -15237849 - AluSx SINE Alu -2 310 5 520 205 134 29 chr21 29670117 29670288 -15237282 + MIR SINE MIR 74 262 0 200 270 95 0 chr21 29670452 29670526 -15237044 - L3b LINE CR1 -220 1363 1283 2181 90 10 3 chr21 29670736 29671036 -15236534 + AluSc SINE Alu 1 302 -7 236 250 0 26 chr21 29671399 29671475 -15236095 + MER5A DNA MER1_type 1 74 -115 404 235 200 12 chr21 29671634 29671804 -15235766 + MLT1J LTR MaLR 310 511 0 1632 190 26 82 chr21 29671846 29671903 -15235667 - MER31B LTR ERV1 -3 463 404 1700 178 0 23 chr21 29671903 29672207 -15235363 + AluJb SINE Alu 2 298 -14 1632 190 26 82 chr21 29672207 29672368 -15235202 - MER31B LTR ERV1 -62 404 236 1959 147 0 0 chr21 29672368 29672668 -15234902 - AluSx SINE Alu -12 300 1 1632 190 26 82 chr21 29672668 29672938 -15234632 - MER31B LTR ERV1 -230 236 1 184 347 28 0 chr21 29673679 29673751 -15233819 + L2 LINE L2 2981 3054 -218 2042 122 3 0 chr21 29674852 29675156 -15232414 + AluSp SINE Alu 1 305 -8 194 339 16 57 chr21 29675333 29675457 -15232113 + MIR3 SINE MIR 87 205 -3 2209 109 0 0 chr21 29676063 29676376 -15231194 - AluSq SINE Alu 0 313 1 773 148 0 0 chr21 29677243 29677365 -15230205 + AluJb SINE Alu 2 123 -189 964 171 6 17 chr21 29677421 29677596 -15229974 + AluJb SINE Alu 132 304 -8 1229 206 162 55 chr21 29677873 29678343 -15229227 - MLT2B1 LTR ERVL 0 520 1 1977 139 3 7 chr21 29678458 29678768 -15228802 + AluSx SINE Alu 1 309 -3 390 261 18 67 chr21 29679018 29679101 -15228469 + MIR SINE MIR 92 165 -97 1907 144 10 0 chr21 29679101 29679400 -15228170 - AluJb SINE Alu -10 302 1 390 261 18 67 chr21 29679400 29679481 -15228089 + MIR SINE MIR 165 248 -14 2102 122 3 0 chr21 29679502 29679813 -15227757 - AluSx SINE Alu 0 312 1 2268 105 41 36 chr21 29680736 29681098 -15226472 - THE1B LTR MaLR 0 364 1 447 19 0 0 chr21 29681845 29681897 -15225673 + (TG)n Simple_repeat Simple_repeat 1 52 0 282 73 0 0 chr21 29681903 29681944 -15225626 + (GA)n Simple_repeat Simple_repeat 2 42 0 442 176 314 0 chr21 29682223 29682325 -15225245 + MLT1E1 LTR MaLR 50 183 -410 1341 151 35 4 chr21 29682356 29682588 -15224982 + AluSg SINE Alu 64 302 -8 280 192 33 0 chr21 29683491 29683555 -15224015 + MLT1E LTR MaLR 273 371 -253 1914 102 48 17 chr21 29683555 29683894 -15223676 + AluSx SINE Alu 1 312 0 935 255 153 23 chr21 29683975 29684418 -15223152 + L2 LINE L2 2806 3306 -7 1345 257 120 19 chr21 29684810 29685136 -15222434 + L1MC4a LINE L1 6445 6827 -981 2091 117 7 0 chr21 29685136 29685436 -15222134 + AluSp SINE Alu 3 304 -9 1345 257 120 19 chr21 29685436 29685541 -15222029 + L1MC4a LINE L1 6827 6920 -888 1276 121 0 0 chr21 29685552 29685734 -15221836 - AluSq SINE Alu -17 296 115 1294 280 86 15 chr21 29685786 29686261 -15221309 + L1MC4 LINE L1 7387 7895 -147 327 243 179 38 chr21 29686792 29687133 -15220437 - L1MC5 LINE L1 -95 7866 7478 707 197 58 76 chr21 29687895 29688118 -15219452 + MER20 DNA MER1_type 1 219 0 2307 87 3 3 chr21 29688273 29688585 -15218985 + AluSq SINE Alu 1 312 -1 559 302 107 25 chr21 29688760 29689247 -15218323 - L2 LINE L2 -86 3227 2710 204 40 0 0 chr21 29689250 29689275 -15218295 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1095 167 47 9 chr21 29689275 29689490 -15218080 - AluJo SINE Alu -32 280 58 278 301 24 0 chr21 29689491 29689574 -15217996 - L2 LINE L2 -618 2696 2612 2085 120 3 0 chr21 29690480 29690779 -15216791 + AluSx SINE Alu 1 300 -12 1956 128 3 13 chr21 29691337 29691641 -15215929 + AluSx SINE Alu 1 301 -11 1751 159 0 3 chr21 29691819 29692102 -15215468 - AluJb SINE Alu -30 282 1 959 179 116 34 chr21 29692247 29692454 -15215116 - MER58A DNA MER1_type 0 224 1 574 101 13 0 chr21 29692628 29692707 -15214863 - MADE1 DNA Mariner 0 80 1 2203 105 0 6 chr21 29692866 29693180 -15214390 - AluSx SINE Alu 0 312 1 352 293 83 28 chr21 29693455 29693636 -15213934 + L2 LINE L2 2474 2664 -650 2018 112 20 0 chr21 29693671 29693965 -15213605 + AluSx SINE Alu 1 300 -12 182 37 37 0 chr21 29694516 29694543 -15213027 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1425 204 3 10 chr21 29694564 29694696 -15212874 + AluSx SINE Alu 3 134 -178 2193 112 0 0 chr21 29694696 29694999 -15212571 + AluSx SINE Alu 1 303 -9 1425 204 3 10 chr21 29694999 29695175 -15212395 + AluSx SINE Alu 134 309 -3 811 181 0 47 chr21 29695179 29695350 -15212220 + AluJb SINE Alu 129 291 -21 220 133 0 22 chr21 29695371 29695416 -15212154 + (TTTTTA)n Simple_repeat Simple_repeat 1 44 0 623 193 83 0 chr21 29695421 29695530 -15212040 - FRAM SINE Alu -61 115 1 265 259 38 99 chr21 29695575 29695706 -15211864 + L3 LINE CR1 1312 1434 -143 2278 67 0 3 chr21 29695708 29696006 -15211564 - AluY SINE Alu -14 297 1 1054 45 0 0 chr21 29696009 29696141 -15211429 - AluY SINE Alu -179 132 1 216 321 0 0 chr21 29696166 29696219 -15211351 + L3 LINE CR1 1519 1571 -6 1934 166 44 75 chr21 29696225 29696706 -15210864 - MER31B LTR ERV1 0 466 1 1057 193 0 28 chr21 29697265 29697483 -15210087 + AluJo SINE Alu 85 296 -16 1995 119 18 0 chr21 29697486 29697810 -15209760 + AluSg SINE Alu 1 329 0 506 189 33 0 chr21 29697810 29697900 -15209670 + AluJo/F(R)AM SINE Alu 133 225 -87 1969 118 19 22 chr21 29697937 29698251 -15209319 + AluSq SINE Alu 1 313 0 1896 119 0 24 chr21 29698336 29698630 -15208940 + AluSx SINE Alu 8 294 -18 2133 80 3 3 chr21 29698630 29698919 -15208651 + AluY SINE Alu 1 289 -22 1778 134 3 59 chr21 29699215 29699536 -15208034 - AluJo SINE Alu -9 303 1 2341 68 0 13 chr21 29699682 29699992 -15207578 + AluY SINE Alu 1 306 -5 2068 125 0 3 chr21 29700137 29700440 -15207130 - AluSx SINE Alu -10 302 1 2155 97 3 0 chr21 29700454 29700768 -15206802 - AluSq SINE Alu 0 315 1 2113 106 3 0 chr21 29701723 29702038 -15205532 + AluSp SINE Alu 1 316 0 603 263 92 62 chr21 29702185 29702380 -15205190 + MIR SINE MIR 14 219 -43 1956 139 7 0 chr21 29702380 29702682 -15204888 + AluSx SINE Alu 1 304 -8 603 263 92 62 chr21 29702682 29702726 -15204844 + MIR SINE MIR 219 260 -2 478 258 32 0 chr21 29702898 29703022 -15204548 + MIR SINE MIR 124 251 -11 2400 64 3 3 chr21 29703284 29703595 -15203975 + AluY SINE Alu 1 311 0 2734 136 24 0 chr21 29703999 29704411 -15203159 - MSTB LTR MaLR -4 422 1 797 269 61 0 chr21 29704457 29704669 -15202901 + MIR SINE MIR 19 243 -19 2293 55 24 3 chr21 29704682 29704975 -15202595 - AluSp SINE Alu -14 299 1 342 0 0 0 chr21 29705161 29705199 -15202371 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1615 153 0 53 chr21 29705202 29705502 -15202068 - AluJb SINE Alu -27 285 2 270 149 194 0 chr21 29707248 29707315 -15200255 - MER116 DNA Mariner 0 80 1 1676 97 0 4 chr21 29707610 29707837 -15199733 - AluSg/x SINE Alu -12 298 73 340 255 38 38 chr21 29709368 29709474 -15198096 + MIR3 SINE MIR 98 203 -5 807 115 0 0 chr21 29709493 29709623 -15197947 + (TGGA)n Simple_repeat Simple_repeat 1 130 0 554 260 87 15 chr21 29709628 29709824 -15197746 - MER63A DNA MER1_type 0 210 1 200 408 0 25 chr21 29710547 29710667 -15196903 + MIR3 SINE MIR 43 159 -49 1037 187 4 53 chr21 29710804 29710861 -15196709 - MLT1B LTR MaLR 0 390 332 276 100 0 0 chr21 29710861 29710901 -15196669 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 1847 132 3 17 chr21 29710901 29711190 -15196380 - AluSx SINE Alu -27 285 1 1037 187 4 53 chr21 29711190 29711356 -15196214 - MLT1B LTR MaLR -56 334 177 2697 243 90 16 chr21 29711474 29712196 -15195374 - MER21B LTR ERV1 -58 805 27 324 0 0 0 chr21 29712196 29712232 -15195338 + (TG)n Simple_repeat Simple_repeat 2 37 0 2697 243 90 16 chr21 29712232 29712246 -15195324 - MER21B LTR ERV1 -836 27 15 2064 85 0 0 chr21 29712296 29712567 -15195003 - AluSx SINE Alu -21 291 21 537 257 162 5 chr21 29713004 29713214 -15194356 - MIR SINE MIR 0 262 20 1426 207 102 6 chr21 29714049 29714382 -15193188 + MLT1A1 LTR MaLR 1 365 0 1860 178 3 50 chr21 29714898 29715281 -15192289 + MLT1A1 LTR MaLR 1 365 0 577 298 18 0 chr21 29715875 29716043 -15191527 - MIR SINE MIR -7 255 85 337 145 14 0 chr21 29717372 29717441 -15190129 + MER20 DNA MER1_type 139 208 -11 2307 109 0 13 chr21 29717499 29717674 -15189896 - AluSx SINE Alu -5 307 136 2970 13 0 0 chr21 29717674 29717992 -15189578 - AluYb8 SINE Alu 0 318 1 2307 109 0 13 chr21 29717992 29718127 -15189443 - AluSx SINE Alu -176 136 1 483 69 0 0 chr21 29718180 29718238 -15189332 - AluS SINE Alu -233 79 22 334 226 236 0 chr21 29718390 29718496 -15189074 - MIR SINE MIR -107 155 25 2078 134 42 0 chr21 29718605 29718941 -15188629 - THE1B LTR MaLR 0 364 15 355 258 74 31 chr21 29718987 29719150 -15188420 + L1ME4a LINE L1 5952 6121 0 1548 187 8 8 chr21 29719223 29719490 -15188080 + AluJo SINE Alu 1 267 -45 293 191 36 18 chr21 29719505 29719615 -15187955 + GA-rich Low_complexity Low_complexity 2 113 0 356 86 0 17 chr21 29719623 29719681 -15187889 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 653 267 91 98 chr21 29720597 29720980 -15186590 + MLT1L LTR MaLR 16 395 -220 2105 117 0 19 chr21 29720980 29721287 -15186283 + AluSc SINE Alu 1 301 -8 653 267 91 98 chr21 29721287 29721505 -15186065 + MLT1L LTR MaLR 395 613 -2 326 250 0 26 chr21 29722161 29722237 -15185333 + L1MCa LINE L1 1994 2067 -4359 4278 85 54 34 chr21 29722268 29722912 -15184658 + MER4A LTR ERV1 4 660 -4 432 0 0 0 chr21 29722912 29722960 -15184610 + (CA)n Simple_repeat Simple_repeat 2 49 0 182 256 61 61 chr21 29723254 29723336 -15184234 - L2 LINE L2 -24 3248 3167 182 232 43 58 chr21 29723952 29724021 -15183549 + L2 LINE L2 3242 3309 -4 2132 121 3 24 chr21 29724051 29724349 -15183221 - AluSx SINE Alu -20 292 1 2256 104 0 0 chr21 29724698 29724985 -15182585 + AluSc SINE Alu 1 287 -22 348 231 9 37 chr21 29725085 29725193 -15182377 + L1MC4 LINE L1 7807 7911 -131 1362 169 37 144 chr21 29725332 29725741 -15181829 - MLT1A1 LTR MaLR 0 365 1 281 179 0 147 chr21 29725744 29725823 -15181747 + Tigger3(Golem) DNA MER2_type 1 65 -2964 2088 103 24 17 chr21 29725823 29726115 -15181455 + AluSx SINE Alu 1 294 -18 281 179 0 147 chr21 29726115 29726130 -15181440 + Tigger3(Golem) DNA MER2_type 65 81 -2948 2181 139 109 52 chr21 29726131 29726343 -15181227 + Tigger3(Golem) DNA MER2_type 2228 2427 -602 1786 145 109 0 chr21 29726343 29726619 -15180951 + AluSx SINE Alu 1 306 -6 2181 139 109 52 chr21 29726619 29726832 -15180738 + Tigger3(Golem) DNA MER2_type 2427 2691 -338 191 88 29 0 chr21 29726832 29726866 -15180704 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 2181 139 109 52 chr21 29726866 29726973 -15180597 + Tigger3(Golem) DNA MER2_type 2691 2791 -238 1782 115 27 41 chr21 29726975 29727270 -15180300 - MER1B DNA MER1_type -46 293 3 766 189 14 0 chr21 29727271 29727414 -15180156 + Tigger3(Golem) DNA MER2_type 2884 3028 -1 269 169 0 84 chr21 29727414 29727485 -15180085 + L1MC4 LINE L1 7976 8040 -2 333 270 78 9 chr21 29727678 29727793 -15179777 + L1MC4a LINE L1 6051 6173 -1635 2270 91 7 0 chr21 29728799 29729107 -15178463 + AluSx SINE Alu 1 310 0 264 122 0 0 chr21 29729109 29729150 -15178420 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 219 252 290 9 chr21 29729208 29729315 -15178255 - L2 LINE L2 0 3272 3136 1538 192 68 3 chr21 29729413 29729705 -15177865 + AluJb SINE Alu 1 311 -1 2293 123 0 0 chr21 29729706 29730015 -15177555 + AluSg SINE Alu 2 310 0 2313 104 10 0 chr21 29730021 29730330 -15177240 + AluSx SINE Alu 1 312 0 275 216 80 23 chr21 29730382 29730470 -15177100 + MIR SINE MIR 39 131 -77 1657 232 47 20 chr21 29730603 29731051 -15176519 + MLT1C LTR MaLR 1 460 -7 2347 74 3 0 chr21 29731722 29732037 -15175533 - AluSx SINE Alu 0 316 1 1026 162 0 6 chr21 29732405 29732572 -15174998 - FRAM SINE Alu 0 166 1 206 152 0 43 chr21 29732608 29732654 -15174916 + (CCA)n Simple_repeat Simple_repeat 2 45 0 2046 151 23 0 chr21 29733248 29733553 -15174017 + AluSx SINE Alu 1 312 0 579 214 12 18 chr21 29733567 29733735 -15173835 + GA-rich Low_complexity Low_complexity 4 170 0 430 264 94 44 chr21 29735264 29735423 -15172147 + MIR SINE MIR 48 214 -48 2073 94 0 21 chr21 29735881 29736167 -15171403 + AluSx SINE Alu 24 303 -9 274 284 34 11 chr21 29736195 29736283 -15171287 - MIR3 SINE MIR -107 101 12 231 125 0 0 chr21 29736378 29736418 -15171152 + (CA)n Simple_repeat Simple_repeat 1 40 0 2583 130 115 51 chr21 29736452 29736771 -15170799 - L1MB2 LINE L1 0 6171 5801 2152 130 3 0 chr21 29736771 29737070 -15170500 + AluSx SINE Alu 1 300 -12 2583 130 115 51 chr21 29737070 29737298 -15170272 - L1MB2 LINE L1 -370 5801 5589 21 0 0 0 chr21 29737308 29737329 -15170241 + AT_rich Low_complexity Low_complexity 1 21 0 2277 97 3 7 chr21 29737329 29737629 -15169941 - AluSx SINE Alu 0 312 14 472 284 22 37 chr21 29737713 29737847 -15169723 - L2 LINE L2 -5 3267 3136 1333 236 73 30 chr21 29737975 29738416 -15169154 + MLT1C LTR MaLR 1 460 -7 2359 89 7 10 chr21 29738519 29738823 -15168747 - AluSq SINE Alu -8 305 3 1244 224 32 96 chr21 29740166 29740238 -15167332 + MLT1C LTR MaLR 1 76 -391 1975 157 12 83 chr21 29740238 29740658 -15166912 - MLT1B LTR MaLR 0 390 1 1244 224 32 96 chr21 29740658 29740679 -15166891 + MLT1C LTR MaLR 76 97 -370 2321 99 0 3 chr21 29740679 29740972 -15166598 + AluSq SINE Alu 14 305 -8 1244 224 32 96 chr21 29740972 29741369 -15166201 + MLT1C LTR MaLR 97 461 -6 806 228 56 30 chr21 29741502 29741734 -15165836 + MIR SINE MIR 1 238 -24 2037 153 0 10 chr21 29742222 29742535 -15165035 - AluJb SINE Alu -2 310 1 2036 155 7 0 chr21 29742741 29742921 -15164649 - AluJb SINE Alu 0 312 128 228 35 0 0 chr21 29742921 29742950 -15164620 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2036 155 7 0 chr21 29742950 29743079 -15164491 - AluJb SINE Alu -184 128 1 804 132 262 11 chr21 29743319 29743505 -15164065 - MIR SINE MIR -23 239 21 2239 116 3 0 chr21 29743861 29744162 -15163408 + AluSq SINE Alu 1 302 -11 1656 136 0 59 chr21 29744566 29744839 -15162731 + AluSx SINE Alu 36 292 -20 617 219 179 0 chr21 29745440 29745591 -15161979 + MER5A DNA MER1_type 1 178 -11 2175 111 0 0 chr21 29745973 29746261 -15161309 + AluSx SINE Alu 13 300 -12 2304 119 0 0 chr21 29746265 29746576 -15160994 + AluSx SINE Alu 1 311 -1 206 255 0 0 chr21 29746807 29746858 -15160712 + A-rich Low_complexity Low_complexity 1 51 0 2307 96 16 0 chr21 29746909 29747212 -15160358 + AluSg SINE Alu 1 308 -2 765 139 9 9 chr21 29747399 29747514 -15160056 + AluJb SINE Alu 13 127 -185 2102 200 48 10 chr21 29747763 29748259 -15159311 + MER34 LTR ERV1 12 526 -16 425 195 77 95 chr21 29748276 29748409 -15159161 + MLT1D LTR MaLR 306 437 -68 2354 89 3 22 chr21 29748409 29748722 -15158848 - AluSp SINE Alu -6 307 1 425 195 77 95 chr21 29748722 29748757 -15158813 + MLT1D LTR MaLR 437 471 -34 2166 102 0 36 chr21 29749060 29749164 -15158406 + AluSx SINE Alu 13 119 -193 2552 59 20 0 chr21 29749164 29749468 -15158102 + AluSp SINE Alu 1 310 -3 2166 102 0 36 chr21 29749468 29749667 -15157903 + AluSx SINE Alu 119 305 -7 2739 146 62 37 chr21 29749669 29750185 -15157385 + L1MB3 LINE L1 5603 6136 -47 2387 86 3 0 chr21 29750185 29750486 -15157084 + AluSp SINE Alu 1 302 -11 2739 146 62 37 chr21 29750486 29750536 -15157034 + L1MB3 LINE L1 6136 6183 0 194 167 56 0 chr21 29751138 29751174 -15156396 + L2 LINE L2 3217 3254 -18 227 277 49 0 chr21 29751463 29751529 -15156041 + MIR SINE MIR 35 110 -102 1644 173 0 8 chr21 29751606 29751872 -15155698 + AluJo SINE Alu 18 281 -31 345 24 0 0 chr21 29751872 29751914 -15155656 + (CA)n Simple_repeat Simple_repeat 1 42 0 308 156 62 0 chr21 29751942 29752006 -15155564 - AluS SINE Alu -8 292 225 2400 72 0 0 chr21 29752013 29752306 -15155264 - AluY SINE Alu -18 293 1 33 46 0 15 chr21 29752311 29752361 -15155209 + AT_rich Low_complexity Low_complexity 1 51 -13 2428 92 0 9 chr21 29752361 29752676 -15154894 + AluSp SINE Alu 2 313 0 33 46 0 15 chr21 29752676 29752690 -15154880 + AT_rich Low_complexity Low_complexity 51 64 0 436 283 17 25 chr21 29753658 29753778 -15153792 + MIR SINE MIR 43 161 -101 2269 87 21 0 chr21 29753781 29754070 -15153500 + AluSx SINE Alu 5 299 -13 271 137 0 0 chr21 29754109 29754164 -15153406 + Alu SINE Alu 247 294 -8 1902 168 126 8 chr21 29754253 29754634 -15152936 - MSTB LTR MaLR 0 426 1 819 259 61 24 chr21 29754884 29754994 -15152576 - MIR SINE MIR 0 262 157 2167 173 49 22 chr21 29754994 29755233 -15152337 - MSTB LTR MaLR 0 426 170 2219 87 42 0 chr21 29755233 29755520 -15152050 + AluSx SINE Alu 1 299 -13 2167 173 49 22 chr21 29755520 29755691 -15151879 - MSTB LTR MaLR -256 170 5 819 259 61 24 chr21 29755691 29755827 -15151743 - MIR SINE MIR -105 157 7 2409 99 0 0 chr21 29755888 29756190 -15151380 + AluSx SINE Alu 2 303 -9 2150 126 0 0 chr21 29756824 29757137 -15150433 - AluSx SINE Alu 0 312 1 1569 163 7 19 chr21 29758368 29758638 -15148932 + AluJo SINE Alu 1 267 -45 2167 93 14 7 chr21 29758658 29758976 -15148594 + AluSg SINE Alu 1 310 0 2468 54 24 3 chr21 29759056 29759354 -15148216 - AluY SINE Alu -7 304 1 233 243 63 91 chr21 29760423 29760586 -15146984 - MIR SINE MIR -54 154 1 254 315 0 39 chr21 29761681 29761808 -15145762 + GA-rich Low_complexity Low_complexity 4 125 0 2092 154 0 0 chr21 29761970 29762269 -15145301 + AluJo SINE Alu 1 299 -13 904 201 56 0 chr21 29762893 29763072 -15144498 + AluJb SINE Alu 85 273 -39 2093 135 0 0 chr21 29763190 29763479 -15144091 + AluSx SINE Alu 17 305 -7 735 179 38 77 chr21 29763479 29763607 -15143963 - MER33 DNA MER1_type -2310 275 159 1409 186 82 4 chr21 29763607 29763887 -15143683 + AluJo SINE Alu 1 302 -10 735 179 38 77 chr21 29763887 29763993 -15143577 - MER33 DNA MER1_type -2426 159 50 2091 123 7 0 chr21 29764542 29764819 -15142751 + AluSx SINE Alu 14 292 -20 1554 151 65 0 chr21 29764991 29765236 -15142334 + AluJb SINE Alu 33 293 -19 2474 97 0 0 chr21 29765236 29765546 -15142024 + AluSg SINE Alu 1 310 0 252 346 59 0 chr21 29766132 29766233 -15141337 - L2 LINE L2 -216 3056 2950 681 242 98 5 chr21 29766252 29766446 -15141124 - MIR SINE MIR -19 243 32 315 67 0 0 chr21 29766691 29766736 -15140834 - MADE1 DNA Mariner -35 45 1 975 234 155 14 chr21 29767051 29767406 -15140164 - MLT1C LTR MaLR -57 410 6 1984 167 7 0 chr21 29767605 29767911 -15139659 + AluSx SINE Alu 1 308 -4 1109 201 109 7 chr21 29768080 29768363 -15139207 + L1ME3A LINE L1 5842 6153 -17 1190 195 0 0 chr21 29768396 29768591 -15138979 + AluJo SINE Alu 1 195 -117 27 49 0 0 chr21 29768602 29768643 -15138927 + AT_rich Low_complexity Low_complexity 1 41 0 202 86 57 0 chr21 29768653 29768688 -15138882 + MIR SINE MIR 115 151 -111 2641 37 0 0 chr21 29769406 29769700 -15137870 - AluY SINE Alu -17 294 1 270 234 172 55 chr21 29769923 29770051 -15137519 + MIR SINE MIR 80 222 -40 883 138 0 22 chr21 29770053 29770191 -15137379 + FLAM_A SINE Alu 8 142 0 2233 120 3 0 chr21 29770239 29770538 -15137032 + AluSq SINE Alu 1 300 -13 748 153 0 8 chr21 29770592 29770710 -15136860 + FLAM_C SINE Alu 1 117 -16 693 268 106 83 chr21 29770933 29771311 -15136259 + L1ME4a LINE L1 5316 5717 -404 2113 148 3 0 chr21 29771311 29771622 -15135948 + AluJb SINE Alu 1 312 0 693 268 106 83 chr21 29771622 29771882 -15135688 + L1ME4a LINE L1 5717 5969 -152 2393 73 0 7 chr21 29772279 29772582 -15134988 + AluY SINE Alu 1 301 -10 2045 139 16 7 chr21 29772824 29773133 -15134437 + AluSx SINE Alu 1 312 0 1784 150 18 0 chr21 29774070 29774370 -15133200 + AluSx SINE Alu 7 311 0 518 103 0 0 chr21 29774382 29774450 -15133120 + AluSx SINE Alu 9 76 -236 1615 131 4 0 chr21 29774554 29774791 -15132779 + AluSx SINE Alu 71 308 -2 1737 183 57 70 chr21 29774820 29774867 -15132703 + MLT1C LTR MaLR 2 48 -419 2452 72 0 0 chr21 29774867 29775158 -15132412 + AluY SINE Alu 1 291 -20 1737 183 57 70 chr21 29775158 29775580 -15131990 + MLT1C LTR MaLR 48 465 -2 38 39 0 0 chr21 29776185 29776237 -15131333 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr21 29776317 29776338 -15131232 + AT_rich Low_complexity Low_complexity 1 21 0 2356 110 0 0 chr21 29776405 29776715 -15130855 + AluSg SINE Alu 1 310 0 2250 107 10 7 chr21 29778268 29778576 -15128994 - AluSx SINE Alu -3 309 1 966 178 70 52 chr21 29778596 29778615 -15128955 - MER20 DNA MER1_type -2 217 200 2025 146 3 7 chr21 29778615 29778924 -15128646 - AluSx SINE Alu -4 308 1 966 178 70 52 chr21 29778924 29779117 -15128453 - MER20 DNA MER1_type -19 200 1 4207 180 40 17 chr21 29779488 29779977 -15127593 + L1MB7 LINE L1 5174 5650 -534 2349 112 0 10 chr21 29779977 29780291 -15127279 + AluSx SINE Alu 1 311 -1 4207 180 40 17 chr21 29780291 29780793 -15126777 + L1MB7 LINE L1 5650 6184 0 2262 111 0 16 chr21 29781064 29781379 -15126191 + AluSg SINE Alu 1 310 0 1136 158 0 11 chr21 29781397 29781574 -15125996 + AluSg/x SINE Alu 137 311 -1 1802 137 32 14 chr21 29781605 29781889 -15125681 + AluJb SINE Alu 13 301 -11 1735 65 0 0 chr21 29782184 29782384 -15125186 - AluSg/x SINE Alu -3 307 108 2251 123 13 0 chr21 29782628 29782936 -15124634 + AluSq SINE Alu 2 313 0 22 0 0 0 chr21 29785263 29785285 -15122285 + AT_rich Low_complexity Low_complexity 1 22 0 192 304 0 0 chr21 29787060 29787106 -15120464 + L2 LINE L2 3006 3051 -221 574 283 57 19 chr21 29787520 29787732 -15119838 - MIR SINE MIR -30 232 13 21 36 0 0 chr21 29788130 29788158 -15119412 + GC_rich Low_complexity Low_complexity 1 28 0 245 279 118 7 chr21 29790491 29790627 -15116943 + L2 LINE L2 2593 2743 -571 343 267 89 0 chr21 29790893 29790994 -15116576 + L2 LINE L2 3204 3313 0 848 178 49 97 chr21 29791358 29791546 -15116024 + MIR SINE MIR 18 193 -69 2259 115 0 6 chr21 29791546 29791858 -15115712 + AluSx SINE Alu 1 310 -2 848 178 49 97 chr21 29791858 29791916 -15115654 + MIR SINE MIR 193 252 -10 615 280 30 12 chr21 29792161 29792329 -15115241 + MIR SINE MIR 18 188 -74 1861 117 99 3 chr21 29792444 29792727 -15114843 + AluSx SINE Alu 1 310 -2 2299 93 0 3 chr21 29792971 29793293 -15114277 - AluSg SINE Alu 0 310 1 525 242 23 23 chr21 29793746 29793878 -15113692 + L2 LINE L2 3181 3312 -1 2081 114 7 0 chr21 29793998 29794279 -15113291 + AluSq SINE Alu 1 283 -30 312 304 0 22 chr21 29794286 29794378 -15113192 - L1MC4 LINE L1 -1339 6703 6614 2279 94 3 23 chr21 29794384 29794693 -15112877 + AluSq SINE Alu 2 304 -9 1912 177 177 7 chr21 29794697 29795120 -15112450 + LTR44 LTR ERV1 25 519 0 390 206 241 18 chr21 29795249 29795395 -15112175 + MER5A DNA MER1_type 4 187 -2 2017 128 3 3 chr21 29795413 29795717 -15111853 - AluSx SINE Alu 0 306 3 2141 128 0 16 chr21 29795728 29796041 -15111529 - AluSx SINE Alu -4 308 1 245 164 0 18 chr21 29797163 29797218 -15110352 + CT-rich Low_complexity Low_complexity 2 55 0 757 197 30 107 chr21 29797226 29797374 -15110196 + MIR SINE MIR 13 138 -124 2398 63 0 30 chr21 29797374 29797677 -15109893 + AluY SINE Alu 1 294 -17 757 197 30 107 chr21 29797677 29797761 -15109809 + MIR SINE MIR 138 227 -35 2030 139 17 3 chr21 29797832 29798126 -15109444 + AluSx SINE Alu 1 298 -14 182 297 123 45 chr21 29798300 29798455 -15109115 + L2 LINE L2 2435 2601 -713 1763 156 3 11 chr21 29798466 29798749 -15108821 - AluJb SINE Alu -27 285 5 22 0 0 0 chr21 29799209 29799231 -15108339 + AT_rich Low_complexity Low_complexity 1 22 0 1929 168 17 57 chr21 29799276 29799590 -15107980 - MLT1B LTR MaLR 0 390 94 2104 109 35 0 chr21 29799590 29799875 -15107695 + AluSc SINE Alu 1 295 -14 1929 168 17 57 chr21 29799875 29799966 -15107604 - MLT1B LTR MaLR -296 94 1 1942 157 3 3 chr21 29800021 29800321 -15107249 + AluJb SINE Alu 3 302 -10 2381 75 13 10 chr21 29800323 29800631 -15106939 + AluSp SINE Alu 1 309 -4 1930 162 3 10 chr21 29801452 29801761 -15105809 + AluJo SINE Alu 1 307 -5 2113 108 3 38 chr21 29801803 29802118 -15105452 - AluSx SINE Alu -8 304 1 691 178 46 13 chr21 29802327 29802479 -15105091 - MLT1D LTR MaLR 0 505 349 2302 115 0 0 chr21 29802579 29802883 -15104687 - AluSx SINE Alu 0 312 9 250 211 0 0 chr21 29803510 29803562 -15104008 + MLT1L LTR MaLR 125 176 -439 2079 152 3 3 chr21 29804024 29804334 -15103236 + AluSx SINE Alu 1 310 -2 1617 200 27 10 chr21 29804384 29804679 -15102891 + AluJb SINE Alu 1 300 -12 2455 97 0 0 chr21 29804737 29805046 -15102524 - AluSg SINE Alu -1 309 1 412 82 49 0 chr21 29805203 29805264 -15102306 - Alu SINE Alu -15 296 233 4016 109 8 71 chr21 29805305 29805866 -15101704 - LTR9 LTR ERV1 -1 611 16 2297 70 3 11 chr21 29805866 29806152 -15101418 + AluSp SINE Alu 2 285 -28 4016 109 8 71 chr21 29806152 29806214 -15101356 - LTR9 LTR ERV1 -596 16 27 2401 102 0 0 chr21 29806214 29806519 -15101051 - AluSx SINE Alu -7 305 1 4016 109 8 71 chr21 29806519 29806546 -15101024 - LTR9 LTR ERV1 -584 28 1 649 304 43 82 chr21 29806603 29807185 -15100385 + MLT1K LTR MaLR 7 565 -23 2345 91 0 3 chr21 29807992 29808289 -15099281 + AluSx SINE Alu 1 296 -16 2249 123 0 3 chr21 29808289 29808597 -15098973 + AluSx SINE Alu 1 308 -4 2287 92 7 0 chr21 29808597 29808880 -15098690 + AluSq SINE Alu 1 285 -28 710 244 106 0 chr21 29808930 29809090 -15098480 - MER45A DNA AcHobo 0 178 2 289 248 88 44 chr21 29809195 29809308 -15098262 - MER103 DNA DNA -44 122 5 2406 88 0 19 chr21 29809659 29809967 -15097603 + AluSc SINE Alu 1 302 -7 353 262 97 10 chr21 29810320 29810423 -15097147 + MIR SINE MIR 46 157 -105 2262 85 3 0 chr21 29810611 29810920 -15096650 + AluSg SINE Alu 1 310 0 266 246 87 0 chr21 29811223 29811292 -15096278 + MER5A DNA MER1_type 11 85 -104 833 118 0 0 chr21 29811293 29811403 -15096167 - FLAM_A SINE Alu -15 127 18 1905 172 0 3 chr21 29811530 29811827 -15095743 - AluJb SINE Alu -16 296 1 2158 108 7 0 chr21 29812190 29812503 -15095067 + AluSg SINE Alu 1 315 0 2042 124 48 3 chr21 29813030 29813320 -15094250 + AluSx SINE Alu 5 307 -5 4625 24 0 4 chr21 29814038 29814535 -15093035 - SVA Other Other 0 1386 892 2255 113 3 0 chr21 29814535 29814835 -15092735 - AluSx SINE Alu -11 301 1 2188 123 7 3 chr21 29815157 29815467 -15092103 - AluSq SINE Alu 0 313 3 218 316 60 30 chr21 29815568 29815701 -15091869 + MIR3 SINE MIR 13 149 -59 2084 112 26 49 chr21 29815783 29816088 -15091482 + AluSx SINE Alu 1 298 -14 324 260 113 134 chr21 29816369 29816846 -15090724 + L3 LINE CR1 600 1066 -511 2180 79 45 0 chr21 29817142 29817433 -15090137 + AluSq SINE Alu 1 304 -9 206 240 100 107 chr21 29817499 29817649 -15089921 + L3 LINE CR1 1140 1288 -289 205 205 0 0 chr21 29817672 29817711 -15089859 + (TA)n Simple_repeat Simple_repeat 2 40 0 1502 178 25 32 chr21 29817948 29818262 -15089308 + AluJb SINE Alu 1 312 0 320 136 0 30 chr21 29818273 29818339 -15089231 + (GGGAA)n Simple_repeat Simple_repeat 4 67 0 482 80 11 91 chr21 29818432 29818520 -15089050 + MLT1A1 LTR MaLR 1 81 -284 2275 93 0 0 chr21 29818520 29818831 -15088739 + AluY SINE Alu 1 311 0 866 119 9 152 chr21 29818857 29819067 -15088503 + MER65B LTR ERV1 6 185 -346 913 98 15 8 chr21 29819069 29819201 -15088369 + FLAM_C SINE Alu 1 133 -10 1737 117 26 4 chr21 29819202 29819467 -15088103 + MER65A LTR ERV1 175 445 0 311 130 22 0 chr21 29819467 29819513 -15088057 + MLT1A1 LTR MaLR 101 147 -218 2062 89 13 23 chr21 29819523 29819827 -15087743 + AluSx SINE Alu 1 301 -11 1075 190 20 95 chr21 29819855 29820150 -15087420 + AluJb SINE Alu 1 273 -39 276 30 0 0 chr21 29820155 29820188 -15087382 + (CA)n Simple_repeat Simple_repeat 2 34 0 549 235 44 73 chr21 29820188 29820392 -15087178 + L1ME3 LINE L1 5964 6161 -1 2100 123 0 10 chr21 29820803 29820938 -15086632 + AluSx SINE Alu 1 136 -176 1667 110 3 80 chr21 29820938 29821238 -15086332 + AluSc SINE Alu 22 298 -11 2100 123 0 10 chr21 29821238 29821411 -15086159 + AluSx SINE Alu 136 306 -6 2139 114 0 0 chr21 29821421 29821719 -15085851 + AluSx SINE Alu 1 298 -14 280 338 94 13 chr21 29821825 29822059 -15085511 - L2 LINE L2 -200 3072 2820 1391 159 0 0 chr21 29822206 29822438 -15085132 + AluJo SINE Alu 65 296 -16 315 252 234 0 chr21 29822486 29822593 -15084977 - MIR3 SINE MIR -43 165 34 798 192 41 6 chr21 29822664 29822836 -15084734 - Charlie1 DNA MER1_type -2517 244 67 210 228 70 18 chr21 29822863 29822920 -15084650 + MER91C DNA MER1_type 49 108 -32 859 131 22 128 chr21 29823593 29823930 -15083640 + MER33 DNA MER1_type 1 341 -22 2106 104 7 3 chr21 29824063 29824370 -15083200 - AluSx SINE Alu -4 308 1 590 224 162 22 chr21 29824484 29824663 -15082907 - MIR SINE MIR -48 214 11 1361 214 58 33 chr21 29824802 29825167 -15082403 + MLT1A2 LTR MaLR 1 374 0 1481 143 139 4 chr21 29825621 29825887 -15081683 - AluSx SINE Alu 0 302 1 3344 144 0 26 chr21 29826249 29826789 -15080781 + MER1A DNA MER1_type 1 526 -1 2167 84 0 7 chr21 29827012 29827322 -15080248 + AluSx SINE Alu 1 308 0 659 164 8 0 chr21 29827346 29827474 -15080096 + CT-rich Low_complexity Low_complexity 1 129 0 1312 170 43 0 chr21 29827474 29827709 -15079861 - AluJo SINE Alu -10 302 58 969 267 81 16 chr21 29827769 29828268 -15079302 + MLT1G1 LTR MaLR 18 594 -1 759 144 24 16 chr21 29828293 29828418 -15079152 + FLAM_C SINE Alu 2 127 -16 22 0 0 0 chr21 29828418 29828440 -15079130 + AT_rich Low_complexity Low_complexity 1 22 0 2028 104 0 0 chr21 29828913 29829183 -15078387 - AluSg SINE Alu -25 285 16 207 0 0 0 chr21 29829498 29829521 -15078049 + (T)n Simple_repeat Simple_repeat 1 23 0 517 354 45 5 chr21 29829874 29830072 -15077498 - MIR SINE MIR -9 253 48 2093 107 7 0 chr21 29830337 29830628 -15076942 + AluSx SINE Alu 5 297 -15 286 143 41 0 chr21 29830724 29830773 -15076797 + MLT1B LTR MaLR 1 51 -416 * 767 178 27 120 chr21 29830771 29830996 -15076574 + MLT1B LTR MaLR 187 390 0 415 174 0 82 chr21 29831009 29831107 -15076463 + MLT1C LTR MaLR 57 146 -321 1721 156 0 52 chr21 29831120 29831236 -15076334 + AluJb SINE Alu 1 121 -191 2016 129 0 16 chr21 29831236 29831553 -15076017 - AluSx SINE Alu 0 312 1 1721 156 0 52 chr21 29831553 29831763 -15075807 + AluJb SINE Alu 121 310 -2 330 252 9 116 chr21 29831822 29832047 -15075523 + MLT1J LTR MaLR 58 295 -216 2055 104 6 28 chr21 29832072 29832382 -15075188 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr21 29832382 29832402 -15075168 + (CAG)n Simple_repeat Simple_repeat 2 21 0 224 207 17 35 chr21 29832418 29832439 -15075131 + GA-rich Low_complexity Low_complexity 2 22 -36 2042 102 0 30 chr21 29832439 29832744 -15074826 + AluSg SINE Alu 1 296 -14 224 207 17 35 chr21 29832744 29832780 -15074790 + GA-rich Low_complexity Low_complexity 22 58 0 550 318 71 50 chr21 29832894 29832957 -15074613 + L3 LINE CR1 496 556 -1021 644 214 207 0 chr21 29832957 29833102 -15074468 + MER45A DNA AcHobo 1 175 -3 550 318 71 50 chr21 29833102 29833378 -15074192 + L3 LINE CR1 556 842 -735 207 349 116 14 chr21 29833397 29833543 -15074027 + MIR3 SINE MIR 3 163 -45 255 61 0 0 chr21 29833728 29833761 -15073809 + (CA)n Simple_repeat Simple_repeat 2 34 0 2133 116 0 0 chr21 29834281 29834582 -15072988 + AluSx SINE Alu 1 301 -11 212 309 149 0 chr21 29834584 29834678 -15072892 + MIR SINE MIR 154 261 -1 331 313 70 0 chr21 29835192 29835307 -15072263 + MIR SINE MIR 20 142 -120 310 225 0 28 chr21 29835365 29835436 -15072134 + Charlie2 DNA MER1_type 45 113 -2749 2052 133 45 11 chr21 29835445 29835797 -15071773 + MSTA LTR MaLR 1 364 -64 1039 153 0 0 chr21 29835797 29835960 -15071610 - AluSg/x SINE Alu -16 294 132 2262 97 0 0 chr21 29835960 29836259 -15071311 - AluSx SINE Alu -13 299 1 269 326 67 15 chr21 29836277 29836412 -15071158 + Charlie2 DNA MER1_type 187 328 -2534 734 251 78 16 chr21 29836412 29836667 -15070903 + Charlie2 DNA MER1_type 1857 2127 -735 1327 172 58 129 chr21 29836669 29836859 -15070711 - L1MD2 LINE L1 -8 6234 6032 1898 120 28 0 chr21 29836859 29837142 -15070428 + AluSx SINE Alu 6 296 -16 1327 172 58 129 chr21 29837142 29837312 -15070258 - L1MD2 LINE L1 -210 6032 5914 1798 141 3 0 chr21 29837312 29837596 -15069974 - AluJo SINE Alu -22 290 6 1327 172 58 129 chr21 29837596 29837717 -15069853 - L1MD2 LINE L1 -328 5914 5786 1671 155 54 0 chr21 29837744 29838191 -15069379 + AluJb SINE Alu 1 463 0 256 132 0 0 chr21 29838198 29838236 -15069334 - Alu SINE Alu -264 38 1 * 2209 96 0 88 chr21 29838236 29838267 -15069303 + MER4E LTR ERV1 424 456 -310 1938 121 0 0 chr21 29838267 29838586 -15068984 - AluSq SINE Alu 0 321 3 2209 96 0 88 chr21 29838586 29838929 -15068641 + MER4E LTR ERV1 456 766 0 26 50 0 0 chr21 29839042 29839082 -15068488 + AT_rich Low_complexity Low_complexity 1 40 0 348 138 172 0 chr21 29839082 29839140 -15068430 + AluS SINE Alu 1 68 -235 797 196 122 18 chr21 29839248 29839477 -15068093 - LTR16A1 LTR ERVL 0 457 205 2901 79 0 208 chr21 29839774 29840417 -15067153 - MER9 LTR ERVK -2 509 1 556 282 33 33 chr21 29840686 29840709 -15066861 - MIR SINE MIR -80 182 160 2072 116 7 0 chr21 29840709 29841010 -15066560 - AluSx SINE Alu -9 303 1 556 282 33 33 chr21 29841010 29841167 -15066403 - MIR SINE MIR -101 161 2 2231 153 16 11 chr21 29841561 29841933 -15065637 + THE1C LTR MaLR 1 374 -1 1955 171 11 0 chr21 29842078 29842429 -15065141 - L1MB3 LINE L1 0 6183 5829 2107 111 7 0 chr21 29842443 29842740 -15064830 + AluSx SINE Alu 1 299 -13 535 290 61 9 chr21 29843206 29843489 -15064081 + LTR33 LTR ERVL 1 267 -256 243 284 49 29 chr21 29843520 29843622 -15063948 + LTR33 LTR ERVL 386 489 -32 2195 103 0 0 chr21 29843786 29844098 -15063472 + AluSx SINE Alu 1 312 0 1975 141 6 6 chr21 29844480 29844792 -15062778 + AluSx SINE Alu 1 312 0 372 94 0 0 chr21 29844796 29844849 -15062721 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 589 84 0 84 chr21 29844849 29845003 -15062567 + (GGGGA)n Simple_repeat Simple_repeat 2 142 0 2292 97 0 0 chr21 29845397 29845707 -15061863 + AluSx SINE Alu 1 310 -2 1693 139 47 121 chr21 29846059 29846153 -15061417 + MLT2D LTR ERVL 1 100 -314 1861 123 0 55 chr21 29846153 29846463 -15061107 - AluSx SINE Alu -19 293 1 1693 139 47 121 chr21 29846463 29846489 -15061081 + MLT2D LTR ERVL 100 126 -288 1538 169 25 3 chr21 29846489 29846773 -15060797 + AluJo SINE Alu 1 290 -22 1693 139 47 121 chr21 29846773 29846992 -15060578 + MLT2D LTR ERVL 126 309 -105 2179 82 3 3 chr21 29846992 29847283 -15060287 - AluSx SINE Alu -8 304 14 1693 139 47 121 chr21 29847283 29847345 -15060225 + MLT2D LTR ERVL 309 374 -40 1806 151 3 3 chr21 29847487 29847772 -15059798 - AluJo SINE Alu -27 285 1 2168 112 10 0 chr21 29848459 29848764 -15058806 - AluSq SINE Alu -5 308 1 2231 203 36 61 chr21 29848812 29848952 -15058618 + MLT1F LTR MaLR 1 143 -399 1841 144 67 28 chr21 29848952 29849313 -15058257 + THE1C LTR MaLR 1 375 0 2231 203 36 61 chr21 29849313 29849728 -15057842 + MLT1F LTR MaLR 143 542 0 206 31 0 31 chr21 29849742 29849774 -15057796 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1462 124 0 14 chr21 29849776 29849994 -15057576 - AluSg/x SINE Alu -24 286 72 743 181 0 0 chr21 29849994 29850121 -15057449 - FRAM SINE Alu -55 121 1 798 105 0 0 chr21 29850123 29850237 -15057333 - L1MB3 LINE L1 -230 5953 5840 2184 189 52 74 chr21 29850237 29850837 -15056733 - LTR9 LTR ERV1 0 612 24 2169 99 0 13 chr21 29850837 29851140 -15056430 - AluSc SINE Alu -10 299 1 1823 128 39 4 chr21 29851152 29851433 -15056137 - AluSx SINE Alu -21 291 1 271 206 116 62 chr21 29851436 29851582 -15055988 - L1MC4 LINE L1 -894 7148 6995 * 448 243 20 11 chr21 29851551 29851830 -15055740 - L1ME4a LINE L1 -182 5939 5649 964 127 0 0 chr21 29851830 29851964 -15055606 + AluY SINE Alu 1 134 -177 2149 106 3 3 chr21 29851964 29852266 -15055304 + AluSg SINE Alu 1 302 -8 477 0 0 0 chr21 29852266 29852319 -15055251 + (TA)n Simple_repeat Simple_repeat 2 54 0 589 282 127 5 chr21 29852346 29852566 -15055004 - L1ME4a LINE L1 -2159 5649 5403 307 246 88 35 chr21 29852830 29852944 -15054626 - L1ME4a LINE L1 -2954 3192 3073 216 262 0 16 chr21 29852944 29853005 -15054565 + CT-rich Low_complexity Low_complexity 2 61 0 2018 220 92 31 chr21 29853073 29853607 -15053963 - MER77 LTR ERV1 -4 601 57 1935 129 3 3 chr21 29854908 29855202 -15052368 + AluSg SINE Alu 1 294 -16 607 80 11 0 chr21 29856187 29856275 -15051295 + L1PA7 LINE L1 6063 6151 -3 2427 65 0 0 chr21 29856325 29856631 -15050939 - AluY SINE Alu -5 306 1 757 114 11 131 chr21 29858796 29858937 -15048633 - THE1B LTR MaLR -83 281 163 2199 95 10 0 chr21 29858937 29859231 -15048339 + AluSx SINE Alu 3 299 -13 757 114 11 131 chr21 29859231 29859265 -15048305 - THE1B LTR MaLR -201 163 127 1162 135 0 21 chr21 29859278 29859470 -15048100 + AluSq SINE Alu 121 308 -5 202 220 0 102 chr21 29860020 29860079 -15047491 - L2 LINE L2 -580 2734 2682 344 273 34 0 chr21 29860322 29860410 -15047160 - L2 LINE L2 -4 3309 3219 1798 148 32 0 chr21 29860424 29860707 -15046863 + AluJo SINE Alu 1 292 -20 4927 176 16 24 chr21 29860960 29861128 -15046442 - L1MB1 LINE L1 -2 7585 7417 2115 120 3 0 chr21 29861128 29861429 -15046141 + AluSx SINE Alu 1 302 -10 4927 176 16 24 chr21 29861429 29861836 -15045734 - L1MB1 LINE L1 -170 7417 7008 198 0 0 0 chr21 29861836 29861858 -15045712 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1903 88 26 69 chr21 29861858 29862163 -15045407 - AluSq SINE Alu -21 292 1 4927 176 16 24 chr21 29862163 29862364 -15045206 - L1MB1 LINE L1 -578 7009 6808 2139 159 77 15 chr21 29862364 29862532 -15045038 + MSTA LTR MaLR 1 157 -271 1739 117 12 0 chr21 29862532 29862789 -15044781 + AluJb SINE Alu 37 296 -16 2139 159 77 15 chr21 29862789 29863023 -15044547 + MSTA LTR MaLR 157 428 0 4927 176 16 24 chr21 29863023 29864012 -15043558 - L1MB1 LINE L1 -779 6808 5828 730 59 0 170 chr21 29864014 29864149 -15043421 - FLAM_C SINE Alu -30 113 2 333 184 39 0 chr21 29864153 29864256 -15043314 - L1MB1 LINE L1 -2962 4603 4497 804 73 0 9 chr21 29864258 29864367 -15043203 - AluY SINE Alu -16 295 188 2539 228 79 57 chr21 29864367 29864491 -15043079 - L1MB1 LINE L1 -3066 4499 4379 1520 180 0 37 chr21 29864491 29864814 -15042756 - AluJo SINE Alu -1 311 1 2539 228 79 57 chr21 29864814 29864865 -15042705 - L1MB1 LINE L1 -3186 4379 4331 1722 139 12 74 chr21 29864865 29865189 -15042381 - AluJb SINE Alu -8 304 1 2539 228 79 57 chr21 29865189 29865298 -15042272 - L1MB1 LINE L1 -3234 4331 4226 1013 260 111 14 chr21 29865298 29865659 -15041911 + MSTD LTR MaLR 1 396 0 2539 228 79 57 chr21 29865659 29866320 -15041250 - L1MB1 LINE L1 -3339 4226 3581 1544 122 183 0 chr21 29866320 29866583 -15040987 - AluSx SINE Alu -1 311 1 2539 228 79 57 chr21 29866583 29867363 -15040207 - L1MB1 LINE L1 -3984 3581 2760 215 30 0 30 chr21 29867369 29867402 -15040168 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1610 190 4 0 chr21 29867405 29867684 -15039886 - AluJo SINE Alu -31 281 2 2330 185 26 70 chr21 29867687 29867943 -15039627 - L1MB3 LINE L1 -43 6140 5919 1655 176 15 7 chr21 29867943 29868215 -15039355 - AluJo SINE Alu -36 276 3 2330 185 26 70 chr21 29868215 29868498 -15039072 - L1MB3 LINE L1 -264 5919 5625 2177 139 0 0 chr21 29868507 29868810 -15038760 - AluSx SINE Alu -9 303 1 2044 135 3 7 chr21 29868948 29869244 -15038326 + AluSx SINE Alu 1 295 -17 2217 125 3 0 chr21 29869245 29869549 -15038021 + AluSg SINE Alu 1 305 -5 2023 115 10 24 chr21 29869562 29869858 -15037712 - AluSq SINE Alu -21 292 1 249 315 157 0 chr21 29870234 29870431 -15037139 + L1ME LINE L1 5343 5570 -600 1482 127 0 5 chr21 29870444 29870664 -15036906 - AluSg/x SINE Alu -8 302 84 552 187 16 24 chr21 29870842 29870957 -15036613 + MLT1C LTR MaLR 1 114 -353 259 139 0 0 chr21 29870957 29870993 -15036577 - MER1B DNA MER1_type 0 339 304 * 989 158 34 0 chr21 29870992 29871138 -15036432 - MER1B DNA MER1_type -146 151 1 1174 222 57 46 chr21 29871138 29871157 -15036413 + MLT1C LTR MaLR 108 125 -342 4220 95 28 40 chr21 29871157 29871258 -15036312 - LTR9B LTR ERV1 0 644 543 2668 23 7 3 chr21 29871258 29871563 -15036007 - AluY SINE Alu -5 306 1 4220 95 28 40 chr21 29871563 29872113 -15035457 - LTR9B LTR ERV1 -101 543 1 1174 222 57 46 chr21 29872113 29872444 -15035126 + MLT1C LTR MaLR 125 462 -5 2028 116 22 0 chr21 29872479 29872776 -15034794 + AluSx SINE Alu 1 303 0 1914 122 34 7 chr21 29872828 29873122 -15034448 - AluSx SINE Alu -10 302 1 1766 156 39 3 chr21 29873195 29873477 -15034093 + AluJb SINE Alu 1 292 -20 2103 107 0 0 chr21 29873487 29873757 -15033813 + AluSq SINE Alu 13 282 -31 186 43 0 0 chr21 29873760 29873783 -15033787 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1485 133 0 26 chr21 29873926 29874159 -15033411 + AluJb SINE Alu 82 308 -4 2302 70 0 17 chr21 29874458 29874766 -15032804 + AluY SINE Alu 1 303 0 257 292 22 0 chr21 29875188 29875277 -15032293 - MLT1L LTR MaLR -26 589 499 2170 122 0 3 chr21 29875427 29875731 -15031839 - AluSx SINE Alu -9 303 1 1227 125 0 0 chr21 29875741 29875909 -15031661 - AluSg/x SINE Alu -8 302 135 2086 97 54 4 chr21 29875909 29876188 -15031382 - AluSg SINE Alu -17 293 1 485 255 151 31 chr21 29876192 29876451 -15031119 - MLT1L LTR MaLR -321 294 5 651 269 60 19 chr21 29876549 29876765 -15030805 + L2 LINE L2 2311 2535 -779 1212 120 51 0 chr21 29877011 29877186 -15030384 + THE1B LTR MaLR 1 184 -180 2306 112 0 6 chr21 29877186 29877500 -15030070 + AluSq SINE Alu 1 312 -1 2451 82 0 3 chr21 29877500 29877805 -15029765 + AluY SINE Alu 1 304 -7 1193 119 21 16 chr21 29877805 29877998 -15029572 - MSTB LTR MaLR -34 392 199 293 200 0 0 chr21 29878025 29878080 -15029490 + MER5A DNA MER1_type 65 119 -70 339 283 30 17 chr21 29878105 29878305 -15029265 + L1MB7 LINE L1 29 498 -6357 1646 250 36 68 chr21 29878443 29878537 -15029033 + L1MB7 LINE L1 2428 2524 -4433 2445 84 3 3 chr21 29878537 29878845 -15028725 + AluSc SINE Alu 1 308 -1 1646 250 36 68 chr21 29878845 29879111 -15028459 + L1MB7 LINE L1 2524 2797 -4160 417 86 99 12 chr21 29879111 29879192 -15028378 + L1MA9 LINE L1 6225 6312 0 1646 250 36 68 chr21 29879192 29879371 -15028199 + L1MB7 LINE L1 2797 2980 -3977 1884 178 0 16 chr21 29879371 29879686 -15027884 + AluJo SINE Alu 1 310 -2 1646 250 36 68 chr21 29879686 29879925 -15027645 + L1MB7 LINE L1 2980 3107 -3850 1716 165 16 26 chr21 29879925 29880228 -15027342 + AluJb SINE Alu 1 300 -12 1646 250 36 68 chr21 29880228 29880570 -15027000 + L1MB7 LINE L1 3107 3459 -3498 1848 222 60 23 chr21 29880609 29881091 -15026479 + L1MB7 LINE L1 4482 4981 -1976 1558 223 86 8 chr21 29881075 29881469 -15026101 + L1MB7 LINE L1 6129 6553 -436 * 2558 152 55 35 chr21 29881477 29881512 -15026058 - MLT1C LTR MaLR 0 438 405 2071 137 3 3 chr21 29881512 29881818 -15025752 + AluSx SINE Alu 1 306 -6 2558 152 55 35 chr21 29881818 29882205 -15025365 - MLT1C LTR MaLR -33 405 45 2357 60 28 0 chr21 29882205 29882490 -15025080 + AluY SINE Alu 1 293 -18 2558 152 55 35 chr21 29882490 29882536 -15025034 - MLT1C LTR MaLR -393 45 1 1508 258 30 23 chr21 29882537 29882971 -15024599 + L1MB7 LINE L1 6550 6986 -9 2004 152 0 0 chr21 29883052 29883354 -15024216 - AluJb SINE Alu -10 302 1 1141 113 29 35 chr21 29883590 29883803 -15023767 - MER30 DNA MER1_type 0 230 18 1054 144 0 23 chr21 29883975 29884148 -15023422 + AluJ SINE Alu 1 169 -143 3853 140 88 31 chr21 29884148 29885053 -15022517 + pTR5 LTR ERV1 743 2025 -413 281 237 65 0 chr21 29885053 29885146 -15022424 + LTR30 LTR ERV1 544 642 -80 2505 83 0 0 chr21 29885146 29885473 -15022097 + pTR5 LTR ERV1 66 392 -2046 783 207 0 0 chr21 29885473 29885618 -15021952 + AluJ SINE Alu 166 310 -2 288 138 12 125 chr21 29886267 29886347 -15021223 + MER5B DNA MER1_type 108 178 0 767 197 0 0 chr21 29886402 29886539 -15021031 + AluSg/x SINE Alu 158 294 -18 345 252 22 0 chr21 29886729 29886864 -15020706 + CT-rich Low_complexity Low_complexity 2 139 0 1118 137 0 0 chr21 29886987 29887140 -15020430 - AluJb SINE Alu -28 284 132 673 219 55 27 chr21 29887186 29887369 -15020201 - MER115 DNA AcHobo -118 575 388 322 277 12 12 chr21 29887414 29887497 -15020073 - MER115 DNA AcHobo -453 240 158 2327 91 7 3 chr21 29887508 29887815 -15019755 + AluSx SINE Alu 1 308 -4 976 165 106 32 chr21 29887815 29888003 -15019567 + MER20 DNA MER1_type 1 202 -17 2051 120 0 14 chr21 29888656 29888947 -15018623 + AluJb SINE Alu 1 287 -25 218 202 9 64 chr21 29890113 29890222 -15017348 + G-rich Low_complexity Low_complexity 4 106 0 305 230 218 0 chr21 29890450 29890537 -15017033 + MER58C DNA MER1_type 49 154 -61 417 275 53 41 chr21 29890687 29890858 -15016712 + MER5B DNA MER1_type 1 173 -5 2335 52 3 7 chr21 29891457 29891747 -15015823 - AluSc SINE Alu -20 289 1 287 287 28 35 chr21 29891974 29892117 -15015453 + Charlie8 DNA MER1_type 41 182 -2235 2531 53 3 3 chr21 29892818 29893118 -15014452 + AluY SINE Alu 1 300 -11 974 43 0 9 chr21 29893321 29893437 -15014133 + AluY SINE Alu 178 292 -19 312 286 64 36 chr21 29893667 29893807 -15013763 - MIR SINE MIR -109 153 10 1822 137 17 20 chr21 29894064 29894356 -15013214 - AluJb SINE Alu -19 293 3 2479 66 7 0 chr21 29894700 29895001 -15012569 - AluY SINE Alu -8 303 1 25 31 0 0 chr21 29895245 29895277 -15012293 + AT_rich Low_complexity Low_complexity 1 32 0 249 150 25 0 chr21 29895277 29895317 -15012253 - MER57A LTR ERV1 -66 337 297 255 323 71 8 chr21 29895917 29896044 -15011526 - MIR3 SINE MIR 0 208 74 2270 116 0 7 chr21 29896056 29896359 -15011211 - AluSx SINE Alu -11 301 1 180 77 0 0 chr21 29900714 29900740 -15006830 + (CA)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr21 29901187 29901213 -15006357 + AT_rich Low_complexity Low_complexity 1 26 0 285 188 0 0 chr21 29902029 29902109 -15005461 + (CTG)n Simple_repeat Simple_repeat 3 82 0 195 300 96 48 chr21 29905272 29905542 -15002028 - L2 LINE L2 -472 2842 2560 530 272 278 21 chr21 29906249 29906716 -15000854 + L2 LINE L2 727 1313 -2001 1710 177 60 27 chr21 29906763 29907164 -15000406 - L1MB8 LINE L1 0 6178 5765 1018 230 95 149 chr21 29907195 29908739 -14998831 + L2 LINE L2 1420 2879 -435 368 268 47 47 chr21 29908960 29909087 -14998483 + L2 LINE L2 3187 3313 0 1883 88 8 4 chr21 29912227 29912476 -14995094 + AluSc SINE Alu 44 293 -16 240 351 46 0 chr21 29912615 29912746 -14994824 - MIR SINE MIR -8 254 118 196 214 226 12 chr21 29913278 29913362 -14994208 - L2 LINE L2 -88 3225 3124 21 57 0 0 chr21 29914079 29914114 -14993456 + AT_rich Low_complexity Low_complexity 1 35 0 207 88 29 0 chr21 29915066 29915100 -14992470 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 2506 84 0 3 chr21 29916006 29916317 -14991253 + AluSx SINE Alu 1 310 -2 541 234 239 5 chr21 29916481 29916686 -14990884 + MIR SINE MIR 10 262 0 1928 159 44 13 chr21 29916710 29917025 -14990545 + MER1B DNA MER1_type 14 338 -1 333 273 28 88 chr21 29917350 29917566 -14990004 - MIR SINE MIR -12 250 48 2122 119 6 28 chr21 29917911 29918231 -14989339 + AluSx SINE Alu 1 313 0 948 222 85 5 chr21 29918720 29918932 -14988638 - MIR SINE MIR -20 242 14 293 264 104 9 chr21 29919142 29919248 -14988322 + L2 LINE L2 3143 3258 -14 2033 130 0 44 chr21 29919380 29919695 -14987875 - AluSx SINE Alu -11 301 1 2042 104 13 29 chr21 29919737 29920045 -14987525 + AluSx SINE Alu 5 307 -5 2077 124 13 0 chr21 29920288 29920586 -14986984 + AluSx SINE Alu 1 302 -10 23 33 0 0 chr21 29921747 29921777 -14985793 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr21 29921862 29921887 -14985683 + AT_rich Low_complexity Low_complexity 1 25 0 346 312 32 40 chr21 29922785 29922910 -14984660 - MIR SINE MIR -69 139 16 311 239 92 31 chr21 29924665 29924795 -14982775 - MIR SINE MIR -38 224 87 24 0 0 0 chr21 29926428 29926452 -14981118 + AT_rich Low_complexity Low_complexity 1 24 0 500 304 35 23 chr21 29927505 29927676 -14979894 - MIR SINE MIR -62 200 28 1850 149 53 108 chr21 29928580 29929071 -14978499 + MLT2C2 LTR ERVL 1 464 0 637 219 123 0 chr21 29930064 29930210 -14977360 - FAM SINE Alu -11 164 1 210 37 0 0 chr21 29930257 29930284 -14977286 + (CA)n Simple_repeat Simple_repeat 2 28 0 204 211 42 0 chr21 29930288 29930359 -14977211 + (TA)n Simple_repeat Simple_repeat 2 75 0 782 140 0 0 chr21 29930376 29930490 -14977080 - FLAM_C SINE Alu -18 115 2 325 283 43 0 chr21 29930499 29930591 -14976979 + L1MC/D LINE L1 5711 5806 -2002 183 129 0 0 chr21 29930821 29930852 -14976718 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr21 29933383 29933405 -14974165 + AT_rich Low_complexity Low_complexity 1 22 0 1289 153 0 5 chr21 29933406 29933629 -14973941 - L1MB1 LINE L1 -2 6166 5945 26 74 0 0 chr21 29933795 29933849 -14973721 + AT_rich Low_complexity Low_complexity 1 54 0 373 244 130 7 chr21 29934468 29934626 -14972944 + L1ME LINE L1 5481 5659 -462 26 0 0 0 chr21 29935684 29935710 -14971860 + AT_rich Low_complexity Low_complexity 1 26 0 958 151 0 0 chr21 29936009 29936155 -14971415 + AluSg/x SINE Alu 135 280 -30 1302 143 0 0 chr21 29937267 29937456 -14970114 + AluSg/x SINE Alu 112 300 -12 2150 89 40 13 chr21 29938191 29938493 -14969077 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr21 29939436 29939470 -14968100 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 182 282 197 42 chr21 29940198 29940340 -14967230 - L2 LINE L2 -973 2341 2178 2349 98 0 0 chr21 29940357 29940663 -14966907 + AluSx SINE Alu 6 311 -1 199 182 68 0 chr21 29940944 29940988 -14966582 - L2 LINE L2 -1 3312 3266 446 228 0 0 chr21 29941111 29941190 -14966380 - FLAM_A SINE Alu -59 83 5 279 240 160 50 chr21 29941575 29941675 -14965895 - MIR SINE MIR -86 176 66 2015 143 7 0 chr21 29942296 29942603 -14964967 - AluSx SINE Alu -3 309 1 2379 83 0 3 chr21 29942613 29942915 -14964655 - AluSq SINE Alu -12 301 1 548 275 194 14 chr21 29943348 29943559 -14964011 + MIR SINE MIR 7 255 -7 396 315 75 39 chr21 29944105 29944315 -14963255 + MIR SINE MIR 35 248 -14 507 291 50 28 chr21 29944764 29944946 -14962624 + MIR SINE MIR 65 250 -12 1837 189 103 20 chr21 29945102 29945557 -14962013 - MLT1D LTR MaLR 0 505 13 305 319 146 38 chr21 29945671 29946071 -14961499 - L3 LINE CR1 -782 795 307 348 243 19 0 chr21 29947243 29947346 -14960224 + L1ME LINE L1 5563 5667 -454 33 25 0 0 chr21 29947771 29947811 -14959759 + AT_rich Low_complexity Low_complexity 1 40 0 714 105 0 0 chr21 29947928 29948033 -14959537 + (CA)n Simple_repeat Simple_repeat 2 106 0 2305 89 0 7 chr21 29948039 29948331 -14959239 - AluSp SINE Alu -23 290 1 756 189 0 0 chr21 29948550 29948677 -14958893 - AluSq/x SINE Alu -182 131 5 2236 117 3 0 chr21 29949098 29949406 -14958164 + AluSp SINE Alu 5 313 0 2392 88 3 0 chr21 29949584 29949889 -14957681 - AluSp SINE Alu -7 306 1 288 283 90 10 chr21 29950671 29950774 -14956796 + MIR SINE MIR 40 150 -65 1067 154 57 9 chr21 29951060 29951287 -14956283 - L1MB8 LINE L1 0 6178 5941 1246 245 59 51 chr21 29951682 29951808 -14955762 + MER97a DNA MER1_type? 6 129 -765 2105 121 24 0 chr21 29951808 29952105 -14955465 - AluSx SINE Alu -8 304 1 1246 245 59 51 chr21 29952105 29952452 -14955118 + MER97a DNA MER1_type? 129 483 -411 2174 104 3 0 chr21 29952746 29953033 -14954537 + AluSg SINE Alu 1 288 -22 1371 125 0 5 chr21 29953324 29953569 -14954001 + AluSg/x SINE Alu 83 326 0 503 211 268 45 chr21 29953573 29953683 -14953887 + MER97c DNA MER1_type? 767 851 -239 180 0 0 0 chr21 29953683 29953703 -14953867 + (TG)n Simple_repeat Simple_repeat 1 20 0 503 211 268 45 chr21 29953703 29953857 -14953713 + MER97c DNA MER1_type? 851 1090 0 319 275 28 21 chr21 29955517 29955659 -14951911 - Charlie7 DNA MER1_type -2437 175 33 1825 186 48 57 chr21 29955666 29956122 -14951448 + Charlie1b DNA MER1_type 3 462 -2299 2547 54 0 0 chr21 29956122 29956416 -14951154 - AluY SINE Alu -16 295 2 1825 186 48 57 chr21 29956416 29956451 -14951119 + Charlie1b DNA MER1_type 462 491 -2270 1575 193 0 13 chr21 29956451 29956751 -14950819 + AluJb SINE Alu 1 296 -16 1825 186 48 57 chr21 29956751 29956784 -14950786 + Charlie1b DNA MER1_type 491 523 0 270 159 0 0 chr21 29956906 29956950 -14950620 + AluJb SINE Alu 211 254 -48 2158 131 0 3 chr21 29957143 29957448 -14950122 - AluSg SINE Alu -4 306 3 2221 86 7 0 chr21 29957585 29957876 -14949694 + AluSc SINE Alu 1 293 -16 369 269 0 77 chr21 29958573 29958677 -14948893 + MIR SINE MIR 44 139 -69 260 283 111 10 chr21 29960164 29960263 -14947307 - L2 LINE L2 -3 3310 3202 370 308 123 86 chr21 29961718 29962483 -14945087 - L1M2 LINE L1 -5469 1380 684 287 238 194 31 chr21 29963553 29963713 -14943857 - MIR SINE MIR 0 262 77 341 292 29 7 chr21 29963723 29963860 -14943710 - L2 LINE L2 -963 2351 2212 1206 34 0 0 chr21 29964257 29964404 -14943166 - L1PA4 LINE L1 -3 6152 6006 2238 102 0 3 chr21 29964625 29964918 -14942652 + AluSx SINE Alu 7 298 -14 268 200 0 0 chr21 29965184 29965234 -14942336 - L2 LINE L2 -5 3267 3218 369 0 0 0 chr21 29965336 29965377 -14942193 + (A)n Simple_repeat Simple_repeat 1 41 0 1524 163 101 0 chr21 29966496 29966782 -14940788 - AluJo SINE Alu 0 312 1 680 161 15 51 chr21 29966785 29966922 -14940648 - AluJo/FLAM SINE Alu -180 132 1 439 154 0 0 chr21 29967039 29967117 -14940453 - L1M4 LINE L1 -882 5264 5187 229 218 69 50 chr21 29967386 29967469 -14940101 + L1ME4a LINE L1 6014 6101 -20 2088 113 0 42 chr21 29967469 29967780 -14939790 - AluSx SINE Alu -14 298 1 229 218 69 50 chr21 29967780 29967797 -14939773 + L1ME4a LINE L1 6101 6116 -5 360 261 36 27 chr21 29968059 29968170 -14939400 - L2 LINE L2 -1 3271 3160 2154 196 83 38 chr21 29968197 29968240 -14939330 - L1M4 LINE L1 -743 5683 5643 2334 93 0 0 chr21 29968240 29968540 -14939030 - AluSg SINE Alu -10 300 1 2154 196 83 38 chr21 29968540 29969253 -14938317 - L1M4 LINE L1 -783 5643 4893 2185 85 0 31 chr21 29969297 29969590 -14937980 + AluSg SINE Alu 1 284 -26 186 0 40 0 chr21 29969590 29969615 -14937955 + (CAA)n Simple_repeat Simple_repeat 2 180 0 3255 227 61 64 chr21 29969617 29969961 -14937609 - L1MCa LINE L1 -2196 4230 3886 2282 92 24 0 chr21 29969961 29970256 -14937314 - AluSq SINE Alu -11 302 1 3255 227 61 64 chr21 29970256 29970764 -14936806 - L1MCa LINE L1 -2540 3886 3378 2341 103 0 0 chr21 29970764 29971066 -14936504 - AluSg SINE Alu -8 302 1 3255 227 61 64 chr21 29971066 29971113 -14936457 - L1MCa LINE L1 -3048 3378 3332 1779 106 0 8 chr21 29971113 29971349 -14936221 - AluSx SINE Alu -15 297 64 3255 227 61 64 chr21 29971349 29971741 -14935829 - L1MCa LINE L1 -3094 3332 2941 2508 250 45 39 chr21 29971807 29971999 -14935571 - L1MCa LINE L1 -3453 2973 2784 2176 130 0 0 chr21 29971999 29972307 -14935263 - AluSx SINE Alu -4 308 1 2508 250 45 39 chr21 29972307 29972852 -14934718 - L1MCa LINE L1 -3642 2784 2244 2466 76 0 0 chr21 29972852 29973154 -14934416 - AluY SINE Alu -9 302 1 2508 250 45 39 chr21 29973154 29973487 -14934083 - L1MCa LINE L1 -4182 2244 1914 2130 122 3 3 chr21 29973487 29973783 -14933787 + AluSx SINE Alu 1 296 -16 2508 250 45 39 chr21 29973783 29974005 -14933565 - L1MCa LINE L1 -4512 1914 1518 233 226 24 73 chr21 29974013 29974137 -14933433 - L1MCa LINE L1 -6242 365 248 1497 194 117 13 chr21 29974151 29974528 -14933042 - L1M4 LINE L1 -1036 5110 4695 428 155 0 0 chr21 29974546 29974617 -14932953 + MER5B DNA MER1_type 108 178 0 2543 64 0 0 chr21 29975148 29975444 -14932126 + AluY SINE Alu 1 296 -15 705 279 57 24 chr21 29975528 29975894 -14931676 - MLT1J LTR MaLR -69 442 3 2571 109 28 14 chr21 29975918 29976275 -14931295 + THE1B LTR MaLR 3 364 0 532 266 117 36 chr21 29976501 29976749 -14930821 - MLT1L LTR MaLR 0 615 348 2288 99 0 32 chr21 29976751 29977063 -14930507 - AluSp SINE Alu -11 302 1 415 165 0 24 chr21 29977153 29977238 -14930332 + AluS SINE Alu 230 312 0 600 236 97 51 chr21 29977244 29977481 -14930089 - MLT1L LTR MaLR -331 284 37 723 219 30 73 chr21 29978826 29978951 -14928619 + MER58A DNA MER1_type 2 114 -2306 1883 151 40 0 chr21 29978951 29979249 -14928321 - AluSg SINE Alu 0 310 1 723 219 30 73 chr21 29979249 29979356 -14928214 + MER58A DNA MER1_type 114 224 0 2308 116 0 0 chr21 29979763 29980073 -14927497 + AluSx SINE Alu 1 310 -2 1609 153 0 63 chr21 29980387 29980551 -14927019 - AluJo SINE Alu -30 282 144 2374 88 7 0 chr21 29980551 29980858 -14926712 - AluSg SINE Alu -1 309 1 1609 153 0 63 chr21 29980858 29980994 -14926576 - AluJo SINE Alu -168 144 1 1768 157 21 103 chr21 29981223 29981445 -14926125 + MER46B DNA MER2_type 6 59 -2672 2235 118 0 10 chr21 29981445 29981759 -14925811 + AluSx SINE Alu 1 311 -1 1768 157 21 103 chr21 29981759 29981924 -14925646 + MER46B DNA MER2_type 59 236 0 422 281 114 35 chr21 29981926 29982063 -14925507 - MIR SINE MIR -15 247 83 1488 142 18 0 chr21 29982063 29982288 -14925282 - MER30 DNA MER1_type -1 229 1 422 281 114 35 chr21 29982288 29982378 -14925192 - MIR SINE MIR -179 83 2 1265 294 103 54 chr21 29982383 29983750 -14923820 - HERVL LTR ERVL -2330 3324 1885 1401 120 60 5 chr21 29983750 29983870 -14923700 + MER30 DNA MER1_type 1 113 -117 180 0 0 0 chr21 29983870 29983890 -14923680 + (TA)n Simple_repeat Simple_repeat 2 21 0 1401 120 60 5 chr21 29983890 29983986 -14923584 + MER30 DNA MER1_type 113 229 -1 1265 294 103 54 chr21 29983986 29984097 -14923473 - HERVL LTR ERVL -3769 1885 1781 251 180 0 66 chr21 29984496 29984557 -14923013 - LTR67 LTR ERVL -500 57 1 275 356 15 8 chr21 29984749 29984881 -14922689 + MLT1L LTR MaLR 192 324 -291 1505 150 29 77 chr21 29984987 29985300 -14922270 - AluJo SINE Alu -12 300 3 367 241 26 11 chr21 29985310 29985434 -14922136 + MLT1L LTR MaLR 455 609 -6 2351 104 0 3 chr21 29985668 29985976 -14921594 - AluSx SINE Alu -5 307 1 2124 136 3 3 chr21 29986415 29986725 -14920845 + AluSq SINE Alu 1 310 -3 695 163 136 0 chr21 29987032 29987179 -14920391 + MIR SINE MIR 75 241 -21 24 0 0 0 chr21 29987188 29987212 -14920358 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr21 29987272 29987300 -14920270 + AT_rich Low_complexity Low_complexity 1 28 0 949 161 126 15 chr21 29987461 29987660 -14919910 + MER58A DNA MER1_type 4 224 0 2249 110 7 3 chr21 29987677 29987977 -14919593 - AluSq SINE Alu -12 301 1 2188 121 0 0 chr21 29987990 29988279 -14919291 - AluSx SINE Alu -23 289 1 2432 78 3 0 chr21 29989583 29989878 -14917692 - AluSp SINE Alu -17 296 1 309 151 0 0 chr21 29989905 29989958 -14917612 + C-rich Low_complexity Low_complexity 1 53 0 340 50 0 0 chr21 29989958 29989998 -14917572 - AluSp/q SINE Alu -108 195 156 248 140 40 0 chr21 29990005 29990055 -14917515 + CT-rich Low_complexity Low_complexity 2 53 0 710 78 10 10 chr21 29990138 29990241 -14917329 + L1PA14 LINE L1 6052 6154 -7 2089 123 0 16 chr21 29990241 29990587 -14916983 + AluSx SINE Alu 1 312 0 744 195 0 0 chr21 29991127 29991281 -14916289 + CT-rich Low_complexity Low_complexity 3 156 0 2301 108 3 0 chr21 29991283 29991589 -14915981 - AluSx SINE Alu -5 307 1 182 340 160 0 chr21 29992028 29992128 -14915442 - L2 LINE L2 -223 3049 2934 2292 109 0 13 chr21 29992390 29992701 -14914869 - AluSx SINE Alu -5 307 1 291 54 0 0 chr21 29992908 29992945 -14914625 + (TG)n Simple_repeat Simple_repeat 2 38 0 1383 153 0 5 chr21 29993039 29993241 -14914329 - AluJb SINE Alu -27 285 85 759 254 28 18 chr21 29993340 29993557 -14914013 + MIR SINE MIR 13 231 -31 2864 46 6 0 chr21 29993846 29994194 -14913376 + L1PA5 LINE L1 5805 6154 0 208 146 62 21 chr21 29994260 29994308 -14913262 + MIR SINE MIR 118 167 -95 262 306 153 8 chr21 29994436 29994678 -14912892 - L1M4 LINE L1 -1989 4157 3881 2046 144 0 0 chr21 29994693 29994978 -14912592 - AluSx SINE Alu -27 285 1 220 211 0 66 chr21 29995095 29995144 -14912426 + (TA)n Simple_repeat Simple_repeat 2 46 -26 210 71 0 0 chr21 29995144 29995172 -14912398 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 211 0 66 chr21 29995172 29995198 -14912372 + (TA)n Simple_repeat Simple_repeat 46 72 0 2331 119 65 3 chr21 29995202 29995555 -14912015 + THE1C LTR MaLR 1 375 0 10651 94 53 3 chr21 29995556 29997060 -14910510 + THE1C-int LTR MaLR 2 1580 0 1869 126 34 19 chr21 29997062 29997384 -14910186 + THE1C LTR MaLR 3 355 0 1699 172 0 39 chr21 29997396 29997704 -14909866 - AluJo SINE Alu -16 296 1 247 378 0 10 chr21 29997796 29997997 -14909573 - L1M4 LINE L1 -2572 3574 3376 4999 71 21 1 chr21 29998104 29998762 -14908808 - L1PA13 LINE L1 0 6163 5493 685 286 63 67 chr21 29998781 29999575 -14907995 - L1M4 LINE L1 -2968 3178 2388 793 194 0 14 chr21 29999710 29999854 -14907716 - AluSg/x SINE Alu -45 267 126 2325 110 3 0 chr21 29999854 30000162 -14907408 - AluSp SINE Alu -4 309 1 2077 104 76 0 chr21 30000165 30000453 -14907117 - AluSx SINE Alu -2 310 1 308 175 67 52 chr21 30000643 30000733 -14906837 + MLT1J2 LTR MaLR 63 154 -292 206 339 121 0 chr21 30000921 30001045 -14906525 + L2 LINE L2 3134 3272 0 2566 60 3 0 chr21 30001082 30001384 -14906186 - AluY SINE Alu -8 303 1 475 316 31 1 chr21 30001602 30001819 -14905751 - MIR SINE MIR -19 243 21 311 272 16 104 chr21 30001867 30001992 -14905578 + MIR SINE MIR 79 192 -70 1862 141 0 30 chr21 30002108 30002405 -14905165 - AluJb SINE Alu -24 288 1 1630 139 34 74 chr21 30002409 30002733 -14904837 - AluJo SINE Alu -1 311 1 361 265 52 52 chr21 30003045 30003181 -14904389 + MIR SINE MIR 45 180 -28 1785 154 0 77 chr21 30003792 30004130 -14903440 + AluJo SINE Alu 1 312 0 1510 184 39 39 chr21 30004206 30004516 -14903054 + AluJb SINE Alu 3 312 0 394 327 30 0 chr21 30005621 30005789 -14901781 + L1ME3A LINE L1 5779 5951 -219 690 282 15 5 chr21 30006195 30006390 -14901180 - MIR SINE MIR -26 236 40 761 165 0 0 chr21 30006693 30006814 -14900756 + FRAM SINE Alu 56 176 0 423 0 0 0 chr21 30006830 30006877 -14900693 + (CA)n Simple_repeat Simple_repeat 2 48 0 3338 106 2 2 chr21 30006985 30007437 -14900133 + MLT2A2 LTR ERVL 2 453 0 2090 198 90 4 chr21 30007537 30008002 -14899568 - MLT1D LTR MaLR 0 505 1 2686 94 17 8 chr21 30008152 30008513 -14899057 + THE1B LTR MaLR 1 364 0 481 247 24 66 chr21 30009145 30009311 -14898259 - MER20B DNA MER1_type -610 173 15 2249 100 3 13 chr21 30010068 30010367 -14897203 - AluSc SINE Alu -13 296 1 1883 143 10 16 chr21 30010625 30010933 -14896637 - AluJo SINE Alu 0 312 7 23 0 0 0 chr21 30011453 30011476 -14896094 + AT_rich Low_complexity Low_complexity 1 23 0 590 185 0 70 chr21 30011476 30011633 -14895937 - AluJo SINE Alu -86 226 81 940 306 73 44 chr21 30011633 30012392 -14895178 + L2 LINE L2 2262 3092 -221 2328 106 3 3 chr21 30012685 30012987 -14894583 + AluSq SINE Alu 1 302 -11 695 207 86 0 chr21 30013853 30014027 -14893543 + MIR SINE MIR 74 262 0 1071 149 0 10 chr21 30014034 30014532 -14893038 + (CCA)n Simple_repeat Simple_repeat 1 671 0 309 95 0 0 chr21 30014536 30014578 -14892992 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1587 66 2 9 chr21 30014581 30015113 -14892457 + (CCA)n Simple_repeat Simple_repeat 1 528 0 1275 112 0 2 chr21 30015141 30015552 -14892018 + (CCA)n Simple_repeat Simple_repeat 1 409 0 2858 75 11 13 chr21 30015552 30015925 -14891645 - THE1C LTR MaLR 0 375 4 394 157 24 0 chr21 30015928 30016011 -14891559 + (CCA)n Simple_repeat Simple_repeat 1 85 0 245 359 5 57 chr21 30016389 30016495 -14891075 + L3 LINE CR1 931 1024 -553 510 325 43 5 chr21 30016495 30016683 -14890887 - MER117 DNA MER1_type -2 195 1 245 359 5 57 chr21 30016683 30016768 -14890802 + L3 LINE CR1 1024 1112 -465 1437 302 44 15 chr21 30016772 30017315 -14890255 + MER20B DNA MER1_type 1 559 -224 2400 97 0 3 chr21 30017417 30017725 -14889845 + AluSq SINE Alu 1 307 -6 2169 126 0 13 chr21 30017863 30018173 -14889397 - AluSx SINE Alu -6 306 1 23 0 0 0 chr21 30018179 30018202 -14889368 + AT_rich Low_complexity Low_complexity 1 23 0 1279 188 0 74 chr21 30018457 30018728 -14888842 + AluJo SINE Alu 1 251 -61 318 258 189 64 chr21 30018762 30018939 -14888631 + L1ME4a LINE L1 5588 5742 -379 423 56 0 0 chr21 30018939 30018993 -14888577 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2220 73 7 24 chr21 30018993 30019281 -14888289 - AluY SINE Alu -28 283 1 2220 116 0 0 chr21 30019289 30019582 -14887988 - AluSx SINE Alu -17 295 3 318 258 189 64 chr21 30019582 30019754 -14887816 + L1ME4a LINE L1 5748 5992 -129 1734 183 37 11 chr21 30019895 30020272 -14887298 - MLT1B LTR MaLR 0 390 4 3642 132 10 0 chr21 30020377 30020899 -14886671 - MER1A DNA MER1_type 0 527 1 1996 157 0 0 chr21 30021553 30021846 -14885724 - AluSx SINE Alu -18 294 2 258 315 0 0 chr21 30022298 30022390 -14885180 + (TG)n Simple_repeat Simple_repeat 1 92 0 206 81 27 0 chr21 30022417 30022454 -14885116 + (TG)n Simple_repeat Simple_repeat 1 38 0 1735 158 183 30 chr21 30022491 30022929 -14884641 - MLT1D LTR MaLR 0 505 1 281 250 62 18 chr21 30023148 30023260 -14884310 - MIR3 SINE MIR -30 178 62 1405 276 97 40 chr21 30023655 30024491 -14883079 - HERVL LTR ERVL -1414 4240 3357 2371 102 7 0 chr21 30024539 30024842 -14882728 - AluSx SINE Alu -7 305 1 362 286 7 91 chr21 30024959 30025113 -14882457 - LTR67 LTR ERVL -397 160 20 24 0 0 0 chr21 30025205 30025229 -14882341 + AT_rich Low_complexity Low_complexity 1 24 0 2110 126 13 3 chr21 30025556 30025865 -14881705 - AluSx SINE Alu 0 312 1 370 185 0 0 chr21 30026151 30026216 -14881354 - MIR SINE MIR -38 224 160 2215 64 7 11 chr21 30026411 30026727 -14880843 + AluSc SINE Alu 1 315 0 353 282 57 16 chr21 30027281 30027405 -14880165 - L2 LINE L2 -5 3308 3180 1504 186 46 29 chr21 30027849 30028156 -14879414 - AluJo SINE Alu 0 312 1 2130 120 33 0 chr21 30028465 30028765 -14878805 + AluSg SINE Alu 1 310 0 376 255 32 0 chr21 30028960 30029054 -14878516 + MER81 DNA DNA 15 111 -3 405 0 0 0 chr21 30029737 30029782 -14877788 + (CA)n Simple_repeat Simple_repeat 2 46 0 417 208 13 7 chr21 30030114 30030268 -14877302 + (TG)n Simple_repeat Simple_repeat 1 155 0 4173 183 36 36 chr21 30030890 30031289 -14876281 - MER21B LTR ERV1 -3 860 462 2244 112 3 3 chr21 30031289 30031601 -14875969 + AluSx SINE Alu 1 312 0 4173 183 36 36 chr21 30031601 30032058 -14875512 - MER21B LTR ERV1 -400 463 4 398 56 0 0 chr21 30032478 30032532 -14875038 - L1PA3 LINE L1 -3 6152 6099 2205 122 0 0 chr21 30032902 30033206 -14874364 + AluSx SINE Alu 3 306 -6 943 228 0 5 chr21 30033251 30033298 -14874272 + MER3 DNA MER1_type 1 46 -163 244 283 58 64 chr21 30033298 30033471 -14874099 - MER3 DNA MER1_type 0 209 38 2155 139 3 0 chr21 30034402 30034857 -14872713 - AluSg SINE Alu 0 456 1 2259 108 3 10 chr21 30034866 30035172 -14872398 - AluSx SINE Alu -4 308 5 1675 173 77 23 chr21 30035196 30035548 -14872022 - MLT1A2 LTR MaLR 0 374 4 262 103 0 0 chr21 30035557 30035596 -14871974 - L2 LINE L2 -8 3305 3267 947 165 32 78 chr21 30036076 30036119 -14871451 - MLT1B LTR MaLR 0 390 347 2249 88 0 11 chr21 30036119 30036447 -14871123 + AluY SINE Alu 1 325 0 947 165 32 78 chr21 30036447 30036619 -14870951 - MLT1B LTR MaLR -43 347 183 407 77 0 0 chr21 30036620 30036672 -14870898 - MLT1B LTR MaLR -331 59 8 1510 169 158 42 chr21 30038850 30039205 -14868365 + MSTD LTR MaLR 1 396 0 414 289 15 15 chr21 30039286 30039421 -14868149 - L2 LINE L2 -2 3311 3177 1143 189 47 8 chr21 30039668 30039922 -14867648 + L1MB7 LINE L1 5909 6172 -12 2249 93 33 0 chr21 30040898 30041198 -14866372 - AluSx SINE Alu -2 310 1 222 319 14 0 chr21 30041551 30041620 -14865950 - L2 LINE L2 -530 2784 2715 2338 94 0 0 chr21 30041697 30041985 -14865585 - AluSc SINE Alu -21 288 1 268 288 14 72 chr21 30042093 30042232 -14865338 - MIR SINE MIR -106 156 26 604 273 67 90 chr21 30042452 30042962 -14864608 + MLT1L LTR MaLR 38 535 -80 2152 113 0 22 chr21 30043103 30043414 -14864156 - AluSx SINE Alu -8 304 1 638 246 154 45 chr21 30043945 30044282 -14863288 + MLT1L LTR MaLR 1 374 -241 239 0 32 0 chr21 30044282 30044313 -14863257 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 43730 52 2 1 chr21 30044313 30050424 -14857146 - L1PA5 LINE L1 -24 6130 11 328 348 22 7 chr21 30050434 30050569 -14857001 + MLT1L LTR MaLR 364 500 -115 3541 182 83 12 chr21 30050581 30051307 -14856263 + L1MC3 LINE L1 7008 7784 -1 773 254 79 16 chr21 30051357 30051530 -14856040 + L1ME1 LINE L1 3310 3512 -2634 2427 67 7 20 chr21 30051530 30051830 -14855740 + AluY SINE Alu 2 297 -14 773 254 79 16 chr21 30051830 30051959 -14855611 + L1ME1 LINE L1 3512 3631 -2515 3082 128 14 12 chr21 30051967 30052475 -14855095 + L1MA4 LINE L1 5788 6296 -4 3408 151 68 17 chr21 30052475 30053127 -14854443 + L1MA7 LINE L1 5601 6291 0 4392 206 39 32 chr21 30053136 30054163 -14853407 + L1ME1 LINE L1 4264 5319 -847 2094 105 20 17 chr21 30054163 30054459 -14853111 - AluSx SINE Alu -4 308 12 4392 206 39 32 chr21 30054459 30055287 -14852283 + L1ME1 LINE L1 5319 6140 -26 405 301 111 33 chr21 30055309 30055707 -14851863 + L1ME4a LINE L1 5655 6083 -38 249 363 9 9 chr21 30055931 30056044 -14851526 + MLT1I LTR MaLR 98 210 -199 2235 119 0 7 chr21 30056098 30056408 -14851162 + AluSx SINE Alu 1 308 -4 4134 175 40 52 chr21 30056409 30057167 -14850403 - MER49 LTR ERV1 -12 911 164 1809 160 3 11 chr21 30057167 30057454 -14850116 + AluJo SINE Alu 1 285 -27 4134 175 40 52 chr21 30057454 30057617 -14849953 - MER49 LTR ERV1 -759 164 1 288 298 19 0 chr21 30057695 30057799 -14849771 + MLT1I LTR MaLR 278 383 -26 2397 119 11 24 chr21 30058391 30058760 -14848810 + THE1B LTR MaLR 1 364 0 1607 132 4 0 chr21 30059696 30059923 -14847647 + AluSg/x SINE Alu 68 295 -17 418 162 96 114 chr21 30059968 30060106 -14847464 - MER112 DNA MER1_type -1 259 123 2659 133 3 3 chr21 30060106 30060496 -14847074 + MLT1B LTR MaLR 1 390 0 418 162 96 114 chr21 30060496 30060524 -14847046 - MER112 DNA MER1_type -137 123 96 213 154 0 0 chr21 30060536 30060575 -14846995 + (CA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr21 30060835 30060857 -14846713 + (A)n Simple_repeat Simple_repeat 1 22 0 2120 125 0 0 chr21 30061312 30061600 -14845970 + AluSq SINE Alu 3 290 -23 2174 153 104 14 chr21 30062404 30062828 -14844742 + MER31B LTR ERV1 1 462 -4 534 263 78 22 chr21 30063346 30063525 -14844045 - MER5A DNA MER1_type 0 189 1 219 69 0 0 chr21 30063711 30063740 -14843830 + (TTC)n Simple_repeat Simple_repeat 3 31 0 846 199 13 6 chr21 30063742 30063898 -14843672 - FRAM SINE Alu -19 157 1 1937 157 16 3 chr21 30064404 30064723 -14842847 + Tigger2 DNA MER2_type 2394 2716 -2 1864 106 10 36 chr21 30064902 30065203 -14842367 + L1PA15 LINE L1 5867 6159 -6 225 0 0 0 chr21 30065213 30065238 -14842332 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 1826 154 54 23 chr21 30065648 30065998 -14841572 + THE1C LTR MaLR 15 375 0 696 137 137 26 chr21 30066092 30066245 -14841325 - L1MB4 LINE L1 -2 6178 6009 3866 188 10 9 chr21 30066254 30067591 -14839979 - L1MB4 LINE L1 -281 5899 4564 226 215 0 15 chr21 30068035 30068100 -14839470 + L1MC4 LINE L1 6640 6703 -1339 568 278 172 25 chr21 30068158 30068574 -14838996 - MLT1L LTR MaLR -68 547 42 342 268 65 22 chr21 30069519 30069657 -14837913 + MIR3 SINE MIR 27 170 -38 383 227 124 13 chr21 30069657 30069858 -14837712 + MIR SINE MIR 2 259 -3 216 0 0 0 chr21 30071250 30071274 -14836296 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1898 91 8 0 chr21 30071287 30071528 -14836042 - AluSc SINE Alu -10 299 57 1946 136 11 0 chr21 30071672 30071951 -14835619 + AluSx SINE Alu 16 297 -15 773 274 55 4 chr21 30072176 30072431 -14835139 + LTR33 LTR ERVL 12 279 -242 24 0 0 0 chr21 30072600 30072624 -14834946 + AT_rich Low_complexity Low_complexity 1 24 0 2057 123 3 0 chr21 30072631 30072923 -14834647 + AluSx SINE Alu 1 293 -19 32 67 0 0 chr21 30072948 30073008 -14834562 + AT_rich Low_complexity Low_complexity 1 60 0 1754 190 59 44 chr21 30073025 30073547 -14834023 - L1M4 LINE L1 -3200 3444 2915 404 192 0 0 chr21 30073535 30073613 -14833957 - L1M4 LINE L1 -6399 143 66 * 894 115 27 15 chr21 30073635 30073894 -14833676 + CT-rich Low_complexity Low_complexity 4 263 0 265 274 0 0 chr21 30073909 30073982 -14833588 - L1M4 LINE L1 -6462 80 8 1582 209 41 18 chr21 30075227 30075566 -14832004 + MLT1A1 LTR MaLR 11 357 -8 582 315 62 22 chr21 30075570 30075843 -14831727 - L1MEd LINE L1 -5745 374 91 1530 206 0 0 chr21 30076114 30076415 -14831155 + AluJo SINE Alu 1 301 -11 293 265 59 20 chr21 30076883 30076985 -14830585 - L2 LINE L2 -1 3271 3166 1082 297 45 13 chr21 30077213 30077587 -14829983 - MLT1I LTR MaLR -8 401 16 580 220 110 33 chr21 30078318 30078500 -14829070 - MLT1K LTR MaLR -24 564 369 400 323 60 38 chr21 30078644 30078991 -14828579 - HERV16 LTR ERVL -4581 415 61 340 235 35 12 chr21 30079057 30079142 -14828428 - LTR16B LTR ERVL -11 453 367 1770 124 3 62 chr21 30079163 30079470 -14828100 - AluSg SINE Alu -21 289 1 522 237 16 116 chr21 30079611 30079691 -14827879 - MER45A DNA AcHobo -1403 178 126 1800 172 27 0 chr21 30079691 30079988 -14827582 + AluJb SINE Alu 1 305 -7 522 237 16 116 chr21 30079988 30080097 -14827473 - MER45A DNA AcHobo -1455 126 8 277 240 58 53 chr21 30080319 30080490 -14827080 - L1M4 LINE L1 -1134 5012 4841 2185 103 0 7 chr21 30080630 30080931 -14826639 + AluSx SINE Alu 1 299 -13 306 264 39 51 chr21 30081042 30081393 -14826177 + LTR33 LTR ERVL 106 499 -22 1467 169 113 51 chr21 30081483 30081855 -14825715 - MSTD LTR MaLR -1 395 1 571 272 43 78 chr21 30081918 30082003 -14825567 + L2 LINE L2 2150 2236 -1078 2133 109 0 0 chr21 30082003 30082296 -14825274 + AluSc SINE Alu 1 293 -16 571 272 43 78 chr21 30082296 30082556 -14825014 + L2 LINE L2 2236 2483 -831 900 141 108 121 chr21 30082556 30082688 -14824882 + MLT1A1 LTR MaLR 1 130 -235 2518 94 32 27 chr21 30082688 30083061 -14824509 + THE1C LTR MaLR 1 375 0 900 141 108 121 chr21 30083061 30083177 -14824393 + MLT1A1 LTR MaLR 130 246 -119 219 186 0 0 chr21 30083177 30083220 -14824350 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 293 232 5 106 chr21 30083225 30083327 -14824243 + (TA)n Simple_repeat Simple_repeat 1 75 -103 279 0 0 0 chr21 30083327 30083358 -14824212 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 293 232 5 106 chr21 30083358 30083453 -14824117 + (TA)n Simple_repeat Simple_repeat 75 178 0 258 325 19 19 chr21 30083425 30083585 -14823985 + (TATATG)n Simple_repeat Simple_repeat 3 162 0 * 322 158 0 175 chr21 30083590 30083710 -14823860 - L1MC4 LINE L1 -1342 6700 6602 * 341 196 57 31 chr21 30083682 30083798 -14823772 + L1MC4 LINE L1 1976 6983 -1339 333 158 0 0 chr21 30083803 30083860 -14823710 + MLT2B1 LTR ERVL 464 520 0 182 296 56 0 chr21 30083863 30083917 -14823653 - L2 LINE L2 -128 3185 3129 1500 271 58 30 chr21 30084093 30084658 -14822912 - MLT1G LTR MaLR 0 590 10 263 299 15 0 chr21 30084667 30084734 -14822836 + L2 LINE L2 3204 3271 -1 1697 176 7 3 chr21 30085202 30085504 -14822066 - AluJo SINE Alu -9 303 1 350 241 0 25 chr21 30085512 30085591 -14821979 - L1ME LINE L1 -463 5658 5582 210 71 0 0 chr21 30086253 30086281 -14821289 + (CTATA)n Simple_repeat Simple_repeat 3 30 0 1854 135 0 14 chr21 30086397 30086711 -14820859 - AluJb SINE Alu 0 310 1 207 0 0 0 chr21 30086786 30086809 -14820761 + (TC)n Simple_repeat Simple_repeat 2 24 0 329 188 26 26 chr21 30086809 30086926 -14820644 + (TA)n Simple_repeat Simple_repeat 1 117 0 204 158 0 0 chr21 30086963 30087001 -14820569 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 2213 80 0 13 chr21 30087446 30087747 -14819823 - AluY SINE Alu -14 297 1 2074 99 3 3 chr21 30087876 30088192 -14819378 - AluSx SINE Alu 0 316 1 1159 125 0 0 chr21 30088986 30089154 -14818416 - AluSg/x SINE Alu -11 299 132 2193 105 20 0 chr21 30089154 30089460 -14818110 - AluSx SINE Alu 0 312 1 29 0 0 0 chr21 30089521 30089550 -14818020 + AT_rich Low_complexity Low_complexity 1 29 0 4050 97 0 5 chr21 30089550 30090108 -14817462 - L1PB1 LINE L1 -1 6150 5596 566 62 25 0 chr21 30090368 30090448 -14817122 - MSTB1 LTR MaLR 0 432 351 1818 143 55 15 chr21 30090590 30090918 -14816652 - MSTB1 LTR MaLR -91 341 1 4040 312 75 30 chr21 30090979 30092047 -14815523 + HERV16 LTR ERVL 736 1754 -3242 2230 194 48 48 chr21 30092047 30092412 -14815158 + MLT1F LTR MaLR 3 370 -172 1837 101 9 60 chr21 30092412 30092728 -14814842 - AluSc SINE Alu -9 300 1 2230 194 48 48 chr21 30092728 30092902 -14814668 + MLT1F LTR MaLR 369 542 0 4040 312 75 30 chr21 30092902 30093407 -14814163 + HERV16 LTR ERVL 1754 2235 -2761 2270 88 0 0 chr21 30093407 30093701 -14813869 - AluSg1 SINE Alu -15 294 1 4040 312 75 30 chr21 30093701 30095004 -14812566 + HERV16 LTR ERVL 2235 3091 -1905 291 161 25 25 chr21 30095017 30095098 -14812472 + CT-rich Low_complexity Low_complexity 2 82 0 189 151 62 34 chr21 30095167 30095313 -14812257 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 1685 140 0 34 chr21 30095348 30095640 -14811930 + AluJb SINE Alu 5 286 -26 505 0 31 0 chr21 30095640 30095705 -14811865 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 259 276 81 52 chr21 30095728 30095902 -14811668 + HERV16 LTR ERVL 3877 4055 -1709 187 354 0 44 chr21 30096080 30096193 -14811377 - MIR SINE MIR -70 192 85 886 240 113 87 chr21 30096795 30097346 -14810224 - L2 LINE L2 -11 3302 2746 214 267 171 19 chr21 30097855 30097885 -14809685 - L2 LINE L2 -88 3225 3201 324 0 0 0 chr21 30097885 30097921 -14809649 + (GA)n Simple_repeat Simple_repeat 1 36 0 214 267 171 19 chr21 30097921 30097995 -14809575 - L2 LINE L2 -112 3201 3105 1044 259 30 44 chr21 30098093 30098390 -14809180 + MLT1A2 LTR MaLR 1 293 -81 280 128 0 0 chr21 30098373 30098412 -14809158 + MLT2B3 LTR ERVL 455 493 -61 * 319 155 56 56 chr21 30098396 30098467 -14809103 + MLT2B1 LTR ERVL 401 476 -44 * 544 189 72 0 chr21 30098465 30098576 -14808994 + MLT1A2 LTR MaLR 256 374 0 2049 77 4 4 chr21 30098743 30099016 -14808554 - AluSx SINE Alu -15 297 25 355 248 261 13 chr21 30099104 30099216 -14808354 - L2 LINE L2 -798 2516 2433 381 22 0 0 chr21 30099216 30099262 -14808308 + (TG)n Simple_repeat Simple_repeat 2 47 0 355 248 261 13 chr21 30099262 30099383 -14808187 - L2 LINE L2 -881 2433 2225 381 277 139 7 chr21 30099479 30099616 -14807954 - MIR SINE MIR -6 256 102 402 312 102 24 chr21 30100408 30100613 -14806957 - L2 LINE L2 0 3313 3093 2387 70 0 0 chr21 30101401 30101699 -14805871 - AluSg1 SINE Alu -11 298 1 21 57 0 0 chr21 30103377 30103412 -14804158 + GC_rich Low_complexity Low_complexity 1 35 0 234 204 9 65 chr21 30103721 30103829 -14803741 + (CGG)n Simple_repeat Simple_repeat 2 103 0 205 288 0 14 chr21 30104638 30104711 -14802859 + C-rich Low_complexity Low_complexity 1 72 0 207 0 0 0 chr21 30105623 30105646 -14801924 + (ATTCG)n Simple_repeat Simple_repeat 1 23 0 836 149 0 8 chr21 30106876 30107010 -14800560 - FLAM_C SINE Alu -10 133 1 419 211 64 28 chr21 30107930 30108039 -14799531 - MER57A LTR ERV1 -78 325 213 2188 116 0 0 chr21 30108039 30108341 -14799229 + AluSx SINE Alu 1 302 -10 1505 119 0 0 chr21 30108515 30108725 -14798845 + AluSx SINE Alu 1 210 -102 1685 221 38 31 chr21 30110356 30110809 -14796761 - MLT1C LTR MaLR -2 465 10 962 265 114 8 chr21 30110837 30111214 -14796356 - LTR16A LTR ERVL -9 441 25 664 134 80 107 chr21 30111338 30111407 -14796163 - L1MA4A LINE L1 -117 6186 6117 1994 83 22 11 chr21 30111407 30111684 -14795886 + AluSq SINE Alu 1 280 -33 279 79 0 0 chr21 30111684 30111722 -14795848 + (CAA)n Simple_repeat Simple_repeat 2 39 0 664 134 80 107 chr21 30111722 30111838 -14795732 - L1MA4A LINE L1 -184 6119 6005 1517 140 70 3 chr21 30112593 30112879 -14794691 - L1MA4A LINE L1 0 6303 5999 1135 245 53 95 chr21 30112899 30113610 -14793960 - L1MC4a LINE L1 -748 5398 5229 234 281 31 21 chr21 30113751 30113847 -14793723 + Charlie4 DNA MER1_type 1865 1961 0 1538 128 29 161 chr21 30114192 30114373 -14793197 + MLT1A1 LTR MaLR 1 204 -161 2176 112 3 0 chr21 30114373 30114677 -14792893 + AluSq SINE Alu 1 305 -8 1538 128 29 161 chr21 30114677 30114837 -14792733 + MLT1A1 LTR MaLR 204 278 -87 2017 112 10 7 chr21 30114837 30115140 -14792430 - AluSx SINE Alu -8 304 1 1538 128 29 161 chr21 30115140 30115218 -14792352 + MLT1A1 LTR MaLR 278 365 0 1665 143 18 145 chr21 30115544 30115793 -14791777 - MLT1B LTR MaLR -5 385 106 1909 134 7 23 chr21 30115793 30116100 -14791470 - AluSg SINE Alu -8 302 1 1665 143 18 145 chr21 30116100 30116202 -14791368 - MLT1B LTR MaLR -284 106 99 1896 137 7 13 chr21 30116202 30116501 -14791069 + AluSx SINE Alu 1 297 -15 1665 143 18 145 chr21 30116501 30116589 -14790981 - MLT1B LTR MaLR -291 99 1 434 199 137 81 chr21 30116590 30116728 -14790842 + L2 LINE L2 3140 3290 -23 1891 74 96 0 chr21 30116728 30116998 -14790572 - AluSq SINE Alu -17 296 1 434 199 137 81 chr21 30116998 30117020 -14790550 + L2 LINE L2 3290 3309 -4 356 328 32 0 chr21 30118023 30118148 -14789422 - MIR SINE MIR -3 259 131 252 363 25 0 chr21 30118148 30118228 -14789342 - MER81 DNA DNA 0 114 33 2196 95 6 13 chr21 30118518 30118833 -14788737 + AluSp SINE Alu 1 313 0 203 217 17 0 chr21 30118870 30118930 -14788640 + (TA)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr21 30118932 30118954 -14788616 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr21 30120039 30120078 -14787492 + AT_rich Low_complexity Low_complexity 1 39 0 2147 102 0 3 chr21 30120297 30120592 -14786978 - AluSx SINE Alu -18 294 1 513 240 92 7 chr21 30120594 30120862 -14786708 - L1ME4a LINE L1 -280 5841 5513 317 289 81 76 chr21 30120895 30121037 -14786533 - L1ME4a LINE L1 -759 5387 5242 1115 103 208 156 chr21 30121037 30121157 -14786413 - MER57A LTR ERV1 -4 399 287 2162 117 0 0 chr21 30121157 30121465 -14786105 + AluSx SINE Alu 1 308 -4 1115 103 208 156 chr21 30121465 30121723 -14785847 - MER57A LTR ERV1 -116 287 1 317 289 81 76 chr21 30121723 30121791 -14785779 - L1ME4a LINE L1 -904 5242 5176 434 304 63 19 chr21 30122048 30122206 -14785364 + MIR SINE MIR 21 185 -77 34 0 0 0 chr21 30122209 30122243 -14785327 + AT_rich Low_complexity Low_complexity 1 34 0 270 0 0 0 chr21 30122243 30122273 -14785297 + (GA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr21 30122272 30122294 -14785276 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 2064 120 0 13 chr21 30122346 30122662 -14784908 + AluSx SINE Alu 1 312 0 814 247 170 52 chr21 30123072 30123595 -14783975 - MER34C LTR ERV1 0 585 1 265 343 10 10 chr21 30124842 30124944 -14782626 - MER91A DNA MER1_type -74 122 21 2207 163 5 28 chr21 30125911 30126310 -14781260 + MLT1B LTR MaLR 1 390 0 1635 143 117 90 chr21 30126971 30127025 -14780545 - MLT1C LTR MaLR 0 467 416 1818 138 7 7 chr21 30127025 30127329 -14780241 + AluJb SINE Alu 1 304 -8 1635 143 117 90 chr21 30127329 30127729 -14779841 - MLT1C LTR MaLR -51 416 1 2237 85 0 3 chr21 30128335 30128628 -14778942 - AluSq SINE Alu -21 292 1 2356 175 40 13 chr21 30129239 30129690 -14777880 - MLT1C LTR MaLR -2 465 3 1956 131 10 0 chr21 30129845 30130136 -14777434 - AluSq SINE Alu -19 294 1 297 0 0 0 chr21 30130508 30130541 -14777029 + (CA)n Simple_repeat Simple_repeat 2 34 0 1573 160 174 27 chr21 30130890 30131297 -14776273 - MLT1C LTR MaLR 0 467 1 374 253 87 27 chr21 30132139 30132289 -14775281 - MIR SINE MIR -12 250 92 2280 78 3 0 chr21 30132290 30132584 -14774986 + AluSp SINE Alu 1 295 -18 1631 140 48 154 chr21 30134763 30134871 -14772699 + MLT1B LTR MaLR 1 119 -271 1838 121 50 0 chr21 30134871 30135152 -14772418 + AluSx SINE Alu 1 295 -17 1631 140 48 154 chr21 30135152 30135479 -14772091 + MLT1B LTR MaLR 119 390 0 296 314 149 0 chr21 30136267 30136388 -14771182 - MIR SINE MIR -106 156 18 1864 140 18 0 chr21 30136506 30136791 -14770779 - AluJb SINE Alu -22 290 1 1325 179 37 55 chr21 30136892 30136954 -14770616 + MER33 DNA MER1_type 6 68 -2517 2140 109 7 0 chr21 30136954 30137257 -14770313 + AluSq SINE Alu 1 305 -8 1325 179 37 55 chr21 30137257 30137519 -14770051 + MER33 DNA MER1_type 68 324 0 411 162 52 96 chr21 30137683 30137769 -14769801 + L1MB2 LINE L1 6041 6120 -51 2223 87 0 3 chr21 30137769 30138067 -14769503 + AluSx SINE Alu 1 297 -15 411 162 52 96 chr21 30138067 30138116 -14769454 + L1MB2 LINE L1 6120 6170 -1 1335 193 21 31 chr21 30140196 30140509 -14767061 - MLT1B LTR MaLR -4 386 77 806 208 6 60 chr21 30140509 30140552 -14767018 + MER2 DNA MER2_type 1 45 -300 1970 112 0 0 chr21 30140552 30140821 -14766749 - AluSx SINE Alu -14 298 30 806 208 6 60 chr21 30140821 30140960 -14766610 + MER2 DNA MER2_type 45 173 -172 225 86 0 57 chr21 30141116 30141151 -14766419 - MLT1B LTR MaLR -357 33 1 454 262 117 57 chr21 30141197 30141548 -14766022 - L2 LINE L2 0 3313 2942 208 217 33 0 chr21 30142544 30142604 -14764966 - L2 LINE L2 -226 3087 3026 1312 163 0 13 chr21 30142604 30142843 -14764727 - AluJb SINE Alu -13 299 64 207 269 185 34 chr21 30143104 30143223 -14764347 - L2 LINE L2 0 3313 3177 2429 70 3 3 chr21 30144187 30144499 -14763071 + AluSp SINE Alu 1 312 -1 1791 132 55 66 chr21 30144600 30144964 -14762606 - MLT1B LTR MaLR -2 388 29 763 196 109 36 chr21 30145064 30145284 -14762286 - MER46A DNA MER2_type 0 236 1 226 246 18 0 chr21 30145296 30145353 -14762217 + L2 LINE L2 3255 3312 -1 250 172 0 52 chr21 30146043 30146101 -14761469 - MIR SINE MIR -1 261 207 2569 48 0 0 chr21 30146101 30146411 -14761159 - AluY SINE Alu -1 310 1 2077 129 3 0 chr21 30146726 30147037 -14760533 - AluSx SINE Alu 0 312 1 373 183 24 0 chr21 30147104 30147186 -14760384 - L1MEd LINE L1 -5965 154 71 1255 145 48 0 chr21 30147252 30147459 -14760111 - AluJo SINE Alu -10 302 86 573 15 0 0 chr21 30147753 30147819 -14759751 + (CA)n Simple_repeat Simple_repeat 2 67 0 1672 216 80 21 chr21 30148472 30148948 -14758622 - MLT1D LTR MaLR -1 504 1 1429 223 148 15 chr21 30149988 30150400 -14757170 - MLT1D LTR MaLR -2 503 37 2254 99 0 10 chr21 30150931 30151244 -14756326 + AluSx SINE Alu 1 310 -2 862 220 39 66 chr21 30151897 30152077 -14755493 - L1MA9 LINE L1 0 6312 6129 2266 103 0 0 chr21 30152077 30152378 -14755192 - AluSq SINE Alu -12 301 1 2171 113 0 0 chr21 30152387 30152688 -14754882 - AluSq SINE Alu -12 301 1 862 220 39 66 chr21 30152688 30152756 -14754814 - L1MA9 LINE L1 -191 6121 6061 1512 188 27 0 chr21 30153225 30153518 -14754052 + AluJo SINE Alu 2 302 0 688 163 0 14 chr21 30153531 30153672 -14753898 + GA-rich Low_complexity Low_complexity 2 140 0 252 274 0 0 chr21 30153753 30153815 -14753755 + CT-rich Low_complexity Low_complexity 3 64 0 201 39 0 0 chr21 30154328 30154354 -14753216 + (TG)n Simple_repeat Simple_repeat 1 26 0 1553 102 0 9 chr21 30154951 30155176 -14752394 - AluSq SINE Alu -6 307 85 1065 252 17 4 chr21 30155238 30155476 -14752094 + MIR SINE MIR 16 256 -6 198 154 19 77 chr21 30155587 30155639 -14751931 + L2 LINE L2 3265 3313 0 2110 89 14 0 chr21 30155986 30156278 -14751292 - AluSx SINE Alu -15 297 2 22 0 0 0 chr21 30156385 30156407 -14751163 + AT_rich Low_complexity Low_complexity 1 22 0 2550 171 106 10 chr21 30156407 30156926 -14750644 - L1MB7 LINE L1 -29 6155 5587 30 69 0 0 chr21 30156926 30156984 -14750586 + AT_rich Low_complexity Low_complexity 1 58 0 438 55 55 0 chr21 30157013 30157086 -14750484 + CT-rich Low_complexity Low_complexity 3 79 0 2140 118 0 6 chr21 30157091 30157404 -14750166 - AluSx SINE Alu -1 311 1 2148 85 7 3 chr21 30157424 30157718 -14749852 + AluY SINE Alu 1 295 -16 228 35 0 0 chr21 30159100 30159129 -14748441 + (TG)n Simple_repeat Simple_repeat 2 30 0 504 353 40 0 chr21 30160174 30160375 -14747195 + MIR SINE MIR 9 217 -45 194 227 23 0 chr21 30160423 30160467 -14747103 - MIR3 SINE MIR -52 156 112 309 270 301 15 chr21 30160486 30160745 -14746825 + L2 LINE L2 2939 3271 -1 207 0 0 0 chr21 30161130 30161153 -14746417 + (A)n Simple_repeat Simple_repeat 1 23 0 305 353 36 6 chr21 30161969 30162136 -14745434 + (CACG)n Simple_repeat Simple_repeat 2 173 0 * 329 386 6 0 chr21 30162085 30162261 -14745309 + (CA)n Simple_repeat Simple_repeat 1 177 0 1912 138 3 13 chr21 30162966 30163277 -14744293 - AluSx SINE Alu -4 308 1 1007 111 0 0 chr21 30163429 30163564 -14744006 + AluSq/x SINE Alu 1 135 -177 2293 91 0 0 chr21 30163564 30163862 -14743708 + AluSx SINE Alu 1 298 -14 2267 65 41 0 chr21 30164235 30164525 -14743045 + AluY SINE Alu 1 302 -9 3030 135 44 0 chr21 30164571 30165052 -14742518 - L1PA16 LINE L1 -9 6157 5656 2235 168 52 115 chr21 30165296 30165871 -14741699 - L1MC2 LINE L1 -1 6343 5816 1962 98 77 3 chr21 30165871 30166158 -14741412 - AluSx SINE Alu -4 308 1 2235 168 52 115 chr21 30166158 30166328 -14741242 - L1MC2 LINE L1 -528 5816 5637 842 243 196 70 chr21 30168393 30168794 -14738776 + Charlie8 DNA MER1_type 3 473 -1944 309 100 0 0 chr21 30168794 30168844 -14738726 + (TG)n Simple_repeat Simple_repeat 2 51 0 842 243 196 70 chr21 30168844 30168911 -14738659 + Charlie8 DNA MER1_type 473 530 -1887 331 259 170 9 chr21 30169016 30169128 -14738442 - L2 LINE L2 -4 3268 3139 299 234 9 90 chr21 30169235 30169346 -14738224 - MLT1D LTR MaLR -398 107 6 2296 91 3 0 chr21 30169461 30169769 -14737801 - AluSp SINE Alu -4 309 1 24 0 0 0 chr21 30169779 30169803 -14737767 + AT_rich Low_complexity Low_complexity 1 24 0 2287 100 0 0 chr21 30171358 30171668 -14735902 - AluSx SINE Alu -2 310 1 2094 82 14 3 chr21 30171994 30172276 -14735294 + AluSg SINE Alu 1 285 -25 1847 142 3 0 chr21 30174150 30174439 -14733131 - AluSx SINE Alu -21 291 2 258 274 0 36 chr21 30174648 30174732 -14732838 + G-rich Low_complexity Low_complexity 1 81 0 181 230 257 9 chr21 30176610 30176682 -14730888 + L2 LINE L2 2841 2894 -378 2080 109 3 0 chr21 30176682 30176975 -14730595 - AluSx SINE Alu -18 294 1 181 230 257 9 chr21 30176975 30177015 -14730555 + L2 LINE L2 2894 2981 -291 306 331 15 15 chr21 30177603 30177733 -14729837 + L2 LINE L2 3180 3309 -4 572 273 137 10 chr21 30178017 30178222 -14729348 - MIR SINE MIR -3 259 29 228 307 53 40 chr21 30178272 30178422 -14729148 + L2 LINE L2 2820 2971 -343 295 248 8 17 chr21 30178651 30178768 -14728802 + GA-rich Low_complexity Low_complexity 4 119 0 373 200 12 12 chr21 30179387 30179467 -14728103 - MER117 DNA MER1_type -106 91 12 246 220 0 0 chr21 30179501 30179551 -14728019 + L2 LINE L2 3264 3313 0 213 39 0 0 chr21 30179637 30179663 -14727907 + (CA)n Simple_repeat Simple_repeat 1 26 0 1650 121 24 0 chr21 30179707 30179956 -14727614 - MSTB1 LTR MaLR 0 432 178 563 275 63 5 chr21 30179956 30180145 -14727425 - MIR SINE MIR -61 201 2 364 183 80 44 chr21 30180448 30180585 -14726985 - L2 LINE L2 -211 3061 2920 198 71 0 0 chr21 30181242 30181270 -14726300 + (TA)n Simple_repeat Simple_repeat 1 28 0 1953 116 31 0 chr21 30183302 30183595 -14723975 - AluSp SINE Alu -11 302 1 395 314 26 7 chr21 30183677 30183830 -14723740 - MIR SINE MIR 0 262 107 600 176 106 100 chr21 30184725 30184830 -14722740 - MER5A DNA MER1_type -4 185 77 1939 138 0 22 chr21 30184830 30185148 -14722422 - AluJb SINE Alu -1 311 1 600 176 106 100 chr21 30185148 30185212 -14722358 - MER5A DNA MER1_type -112 77 15 2263 61 3 3 chr21 30185371 30185668 -14721902 + AluY SINE Alu 1 297 -14 379 302 39 34 chr21 30186091 30186270 -14721300 + L3 LINE CR1 1119 1298 -279 363 266 94 47 chr21 30187194 30187386 -14720184 + L2 LINE L2 3110 3310 -3 1414 76 28 228 chr21 30188347 30188731 -14718839 - AluSp SINE Alu 0 313 1 476 311 63 39 chr21 30190218 30190424 -14717146 - L2 LINE L2 0 3313 3103 4187 181 89 11 chr21 30190467 30190558 -14717012 - L1MD2 LINE L1 0 6359 6277 2473 108 37 0 chr21 30190558 30190909 -14716661 - THE1B LTR MaLR 0 364 1 4187 181 89 11 chr21 30190909 30191678 -14715892 - L1MD2 LINE L1 -82 6277 5431 226 308 131 0 chr21 30191697 30191804 -14715766 - MARNA DNA Mariner -72 514 394 960 244 85 65 chr21 30191941 30192342 -14715228 - MLT1I LTR MaLR 0 409 1 247 269 15 0 chr21 30192384 30192451 -14715119 + MARNA DNA Mariner 203 270 -316 315 327 26 13 chr21 30192536 30192689 -14714881 - MARNA DNA Mariner -391 195 41 225 274 211 0 chr21 30193239 30193334 -14714236 - MIR SINE MIR -46 216 102 1534 155 3 46 chr21 30193558 30193842 -14713728 - AluJo SINE Alu -11 301 30 2260 96 0 12 chr21 30195209 30195532 -14712038 + L1PA13 LINE L1 5843 6161 -2 2157 112 0 6 chr21 30195650 30195962 -14711608 - AluSx SINE Alu -1 311 2 3612 89 4 48 chr21 30195971 30196511 -14711059 - L1PB1 LINE L1 -1 6150 5635 1714 185 0 6 chr21 30197128 30197442 -14710128 + AluJb SINE Alu 1 312 0 191 200 67 22 chr21 30197564 30197609 -14709961 + L2 LINE L2 3221 3267 -5 405 91 0 0 chr21 30197642 30197697 -14709873 + Alu SINE Alu 2 56 -254 447 226 252 0 chr21 30198620 30198775 -14708795 + MER91A DNA MER1_type 1 194 -2 625 165 12 0 chr21 30198777 30198941 -14708629 + (TG)n Simple_repeat Simple_repeat 2 167 0 1955 118 7 0 chr21 30198942 30199238 -14708332 - AluSx SINE Alu -14 298 1 1704 168 23 3 chr21 30199619 30199922 -14707648 - AluJb SINE Alu -3 309 1 1991 90 25 11 chr21 30201121 30201436 -14706134 - AluSx SINE Alu 0 319 1 23 33 0 0 chr21 30201515 30201545 -14706025 + AT_rich Low_complexity Low_complexity 1 30 0 1187 210 7 15 chr21 30201892 30202164 -14705406 - AluJo SINE Alu -13 299 30 185 277 115 54 chr21 30202953 30203101 -14704469 + MIR3 SINE MIR 39 195 -13 23 33 0 0 chr21 30203192 30203222 -14704348 + AT_rich Low_complexity Low_complexity 1 30 0 2129 57 25 11 chr21 30203223 30203505 -14704065 - L1PA5 LINE L1 -1 6153 5868 357 82 0 0 chr21 30203623 30203672 -14703898 + (ATG)n Simple_repeat Simple_repeat 1 49 0 630 260 34 17 chr21 30203699 30203876 -14703694 + MIR SINE MIR 22 201 -61 498 271 141 17 chr21 30204203 30204502 -14703068 + L1MC4 LINE L1 7707 8042 0 195 42 0 0 chr21 30204512 30204536 -14703034 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 607 261 188 22 chr21 30205187 30205501 -14702069 + Charlie7 DNA MER1_type 73 438 -2174 1543 276 181 43 chr21 30205548 30206481 -14701089 + Charlie7 DNA MER1_type 546 1607 -1005 2185 117 0 0 chr21 30206521 30206828 -14700742 - AluSx SINE Alu -5 307 1 1920 163 0 0 chr21 30206831 30207132 -14700438 - AluSx SINE Alu -11 301 1 479 206 67 18 chr21 30207170 30207335 -14700235 + Charlie7 DNA MER1_type 2438 2610 -2 1333 173 11 32 chr21 30207777 30208060 -14699510 - AluJb SINE Alu -35 277 1 6752 134 26 38 chr21 30208254 30209167 -14698403 - L1MA8 LINE L1 -3 6288 5365 2265 67 0 51 chr21 30209167 30209479 -14698091 - AluSc SINE Alu -13 296 1 6752 134 26 38 chr21 30209479 30209578 -14697992 - L1MA8 LINE L1 -926 5365 5266 2266 80 33 0 chr21 30209578 30209877 -14697693 - AluY SINE Alu -2 309 1 6752 134 26 38 chr21 30209877 30210123 -14697447 - L1MA8 LINE L1 -1025 5266 5019 2111 129 0 0 chr21 30210123 30210432 -14697138 - AluSg SINE Alu -1 309 1 2115 74 0 68 chr21 30210436 30210759 -14696811 - AluSc SINE Alu -8 301 1 6752 134 26 38 chr21 30210759 30210771 -14696799 - L1MA8 LINE L1 -1275 5016 5005 2121 105 3 3 chr21 30210771 30211065 -14696505 - AluSp SINE Alu -17 296 3 6752 134 26 38 chr21 30211065 30211900 -14695670 - L1MA8 LINE L1 -1286 5005 4161 267 31 0 0 chr21 30211900 30211932 -14695638 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6752 134 26 38 chr21 30211932 30211964 -14695606 - L1MA8 LINE L1 -2130 4161 4130 1150 80 0 0 chr21 30211964 30212115 -14695455 - L1PA11 LINE L1 -3 6171 6021 6752 134 26 38 chr21 30212115 30212218 -14695352 - L1MA8 LINE L1 -2161 4130 4072 219 114 0 0 chr21 30212812 30212847 -14694723 + (TG)n Simple_repeat Simple_repeat 1 35 0 2142 112 3 6 chr21 30212852 30213165 -14694405 - AluSx SINE Alu 0 312 1 328 343 7 7 chr21 30213284 30213427 -14694143 - MIR3 SINE MIR -63 145 3 885 199 23 0 chr21 30213853 30214024 -14693546 + MER5B DNA MER1_type 4 178 0 2206 148 8 18 chr21 30214059 30214452 -14693118 + L1MA5 LINE L1 5912 6300 0 2368 119 38 0 chr21 30214898 30215242 -14692328 - THE1B LTR MaLR -2 362 6 621 329 87 26 chr21 30216149 30217139 -14690431 + L2 LINE L2 2252 3313 0 479 178 92 2 chr21 30218512 30218684 -14688886 - MLT1B LTR MaLR 0 390 171 455 169 47 14 chr21 30218706 30218854 -14688716 + CT-rich Low_complexity Low_complexity 4 156 0 266 104 0 21 chr21 30218860 30218908 -14688662 + (TCCCC)n Simple_repeat Simple_repeat 3 49 0 1344 192 36 0 chr21 30218934 30219184 -14688386 - AluJb SINE Alu -53 259 1 927 169 17 6 chr21 30219186 30219358 -14688212 - MLT1B LTR MaLR -213 177 4 530 269 23 96 chr21 30219435 30219495 -14688075 + L1ME3A LINE L1 5925 5988 -182 2231 100 3 0 chr21 30219495 30219796 -14687774 + AluSx SINE Alu 1 302 -10 530 269 23 96 chr21 30219796 30219995 -14687575 + L1ME3A LINE L1 5988 6165 -5 2197 129 39 83 chr21 30220259 30220580 -14686990 - MLT2D LTR ERVL 0 414 80 378 0 0 0 chr21 30220580 30220622 -14686948 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1964 123 0 0 chr21 30220622 30220898 -14686672 - AluSx SINE Alu -36 276 1 2197 129 39 83 chr21 30220898 30221008 -14686562 - MLT2D LTR ERVL -332 82 1 1963 137 0 3 chr21 30221288 30221581 -14685989 - AluSx SINE Alu -20 292 1 308 333 18 0 chr21 30222042 30222153 -14685417 - MIR SINE MIR -69 139 27 222 363 14 34 chr21 30224782 30224928 -14682642 - L2 LINE L2 -9 3304 3162 1784 162 3 19 chr21 30224935 30225244 -14682326 + AluJo SINE Alu 2 305 -7 1853 160 58 3 chr21 30227462 30227806 -14679764 + L1MB2 LINE L1 5808 6170 -1 1930 136 3 7 chr21 30227972 30228273 -14679297 - AluJb SINE Alu -4 308 9 1919 134 0 13 chr21 30231052 30231351 -14676219 + AluJb SINE Alu 1 295 -17 180 0 0 0 chr21 30231716 30231736 -14675834 + (TG)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr21 30231785 30231809 -14675761 + AT_rich Low_complexity Low_complexity 1 24 0 1915 140 7 13 chr21 30232151 30232451 -14675119 - AluJb SINE Alu -14 298 1 243 341 36 22 chr21 30232998 30233136 -14674434 - MIR3 SINE MIR -7 201 62 216 245 61 51 chr21 30234303 30234401 -14673169 - MIR3 SINE MIR -108 100 2 397 298 73 54 chr21 30234415 30234745 -14672825 - MLT1J2 LTR MaLR -15 419 68 2066 131 0 3 chr21 30234821 30235133 -14672437 - AluSx SINE Alu -1 311 1 1569 186 46 54 chr21 30235272 30235449 -14672121 + MLT1B LTR MaLR 1 178 -212 2326 80 0 6 chr21 30235449 30235761 -14671809 + AluSg SINE Alu 1 310 0 1569 186 46 54 chr21 30235761 30235975 -14671595 + MLT1B LTR MaLR 178 389 -1 1935 134 13 3 chr21 30236127 30236426 -14671144 - AluSx SINE Alu -10 302 1 258 281 83 10 chr21 30236470 30236508 -14671062 - MIR SINE MIR -32 230 196 674 197 13 90 chr21 30236508 30236741 -14670829 - MER58C DNA MER1_type 0 215 1 258 281 83 10 chr21 30236741 30236798 -14670772 - MIR SINE MIR -66 196 128 1949 145 3 7 chr21 30236819 30237129 -14670441 - AluJo SINE Alu -1 311 3 1990 108 49 0 chr21 30238000 30238286 -14669284 - AluSx SINE Alu -12 300 1 213 39 0 0 chr21 30238300 30238326 -14669244 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 211 339 45 45 chr21 30238420 30238532 -14669038 - MIR SINE MIR -64 144 33 654 187 21 0 chr21 30238876 30239162 -14668408 + (TGGA)n Simple_repeat Simple_repeat 1 292 0 2247 129 40 53 chr21 30239807 30240202 -14667368 + MLT1B LTR MaLR 1 390 0 1728 211 45 18 chr21 30240216 30240439 -14667131 - MER89 LTR ERV1 0 559 343 2531 150 57 5 chr21 30240439 30240846 -14666724 - MSTA LTR MaLR 0 428 1 1728 211 45 18 chr21 30240846 30241071 -14666499 - MER89 LTR ERV1 -216 343 1 1892 205 71 18 chr21 30241111 30241550 -14666020 - MLT1C LTR MaLR 0 467 6 212 317 199 34 chr21 30241972 30242234 -14665336 + L2 LINE L2 2223 2527 -787 2210 157 57 5 chr21 30242415 30242822 -14664748 + MSTC LTR MaLR 1 428 0 262 315 45 0 chr21 30242822 30242911 -14664659 + MIR SINE MIR 167 259 -3 195 42 0 0 chr21 30243058 30243082 -14664488 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3165 198 87 101 chr21 30243207 30243805 -14663765 - L1MC3 LINE L1 -6 7779 7100 328 273 20 40 chr21 30243805 30243904 -14663666 - MLT1F1 LTR MaLR -435 132 36 3165 198 87 101 chr21 30243904 30244251 -14663319 - L1MC3 LINE L1 -685 7100 6750 437 212 103 27 chr21 30244251 30244397 -14663173 - MARNA DNA Mariner -197 389 233 3085 105 2 25 chr21 30244399 30244876 -14662694 + L1PB2 LINE L1 5684 6149 -2 2213 82 0 3 chr21 30245007 30245300 -14662270 + AluY SINE Alu 1 292 -19 208 329 24 12 chr21 30246438 30246520 -14661050 + L2 LINE L2 1855 1937 -1377 1543 207 48 14 chr21 30246576 30246728 -14660842 + MLT1B LTR MaLR 21 166 -224 192 40 0 0 chr21 30246728 30246753 -14660817 + (GA)n Simple_repeat Simple_repeat 2 26 0 1543 207 48 14 chr21 30246753 30246958 -14660612 + MLT1B LTR MaLR 166 390 0 226 346 88 62 chr21 30247148 30247261 -14660309 + L2 LINE L2 2262 2371 -943 207 0 0 0 chr21 30247261 30247284 -14660286 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2375 64 3 0 chr21 30247286 30247581 -14659989 - AluSp SINE Alu -17 296 1 226 346 88 62 chr21 30247581 30247851 -14659719 + L2 LINE L2 2371 2658 -656 664 181 93 83 chr21 30248129 30248175 -14659395 - MLT1B LTR MaLR -195 195 151 2250 92 7 0 chr21 30248175 30248480 -14659090 + AluSp SINE Alu 1 307 -6 664 181 93 83 chr21 30248480 30248549 -14659021 - MLT1B LTR MaLR -239 151 84 1424 197 104 20 chr21 30248549 30248894 -14658676 - MLT1A2 LTR MaLR 0 374 1 664 181 93 83 chr21 30248894 30248970 -14658600 - MLT1B LTR MaLR -306 84 1 504 184 28 0 chr21 30249628 30249737 -14657833 - L1MD3 LINE L1 -2 7993 7882 1228 147 23 47 chr21 30249749 30249839 -14657731 - L1MB3 LINE L1 -2 6181 6090 2175 100 0 0 chr21 30249839 30250120 -14657450 + AluSx SINE Alu 1 284 -28 630 0 0 0 chr21 30250120 30250190 -14657380 + (CAATA)n Simple_repeat Simple_repeat 1 70 0 2175 100 0 0 chr21 30250190 30250208 -14657362 + AluSx SINE Alu 283 300 -12 1228 147 23 47 chr21 30250208 30250375 -14657195 - L1MB3 LINE L1 -93 6090 5930 507 208 9 9 chr21 30250886 30250992 -14656578 - MLT1C LTR MaLR -6 461 356 359 238 12 0 chr21 30251000 30251080 -14656490 + MIR SINE MIR 79 159 -103 235 257 62 69 chr21 30251084 30251228 -14656342 + LTR16A1 LTR ERVL 8 150 -307 350 153 17 0 chr21 30251378 30251437 -14656133 - MER81 DNA DNA -1 113 54 2257 94 0 3 chr21 30253137 30253444 -14654126 - AluSq SINE Alu -6 307 2 263 132 0 0 chr21 30253754 30253792 -14653778 - U2 snRNA snRNA -150 38 1 319 277 24 12 chr21 30254412 30254495 -14653075 + L1MC4 LINE L1 6611 6694 -1348 1221 108 5 0 chr21 30254495 30254717 -14652853 + (TA)n Simple_repeat Simple_repeat 1 223 0 3191 84 15 0 chr21 30254720 30255126 -14652444 - MLT2A2 LTR ERVL -41 412 1 3779 168 55 28 chr21 30255341 30256055 -14651515 + MER44D DNA MER2_type 1 605 0 1990 213 83 27 chr21 30256802 30257319 -14650251 + MER77 LTR ERV1 40 585 -20 756 210 62 0 chr21 30258037 30258083 -14649487 + MER5B DNA MER1_type 1 43 -135 200 35 35 0 chr21 30258083 30258112 -14649458 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 756 210 62 0 chr21 30258112 30258227 -14649343 + MER5B DNA MER1_type 43 172 -6 197 297 68 14 chr21 30258291 30258365 -14649205 - L2 LINE L2 -3 3269 3192 358 274 62 56 chr21 30258660 30258839 -14648731 + MER5A DNA MER1_type 7 186 -3 2532 161 11 16 chr21 30259095 30259530 -14648040 + Tigger2a DNA MER2_type 1 433 -1 212 292 0 0 chr21 30259569 30259617 -14647953 + C-rich Low_complexity Low_complexity 6 53 0 285 29 0 0 chr21 30259618 30259652 -14647918 + (CA)n Simple_repeat Simple_repeat 1 34 0 430 257 28 46 chr21 30259657 30259766 -14647804 - L2 LINE L2 -29 3284 3178 21 0 0 0 chr21 30259826 30259847 -14647723 + AT_rich Low_complexity Low_complexity 1 21 0 371 345 0 0 chr21 30260197 30260374 -14647196 + (CATTC)n Satellite Satellite 4 180 0 285 346 0 0 chr21 30260397 30260524 -14647046 + (CATTC)n Satellite Satellite 4 130 0 * 450 362 0 0 chr21 30260437 30260791 -14646779 + (CACTC)n Simple_repeat Simple_repeat 1 354 0 801 288 89 60 chr21 30260807 30260939 -14646631 - LTR33 LTR ERVL -32 489 362 2437 161 29 5 chr21 30260939 30261355 -14646215 + MSTB LTR MaLR 1 426 0 801 288 89 60 chr21 30261355 30261659 -14645911 - LTR33 LTR ERVL -159 362 40 1116 162 13 53 chr21 30263857 30264085 -14643485 - MER20 DNA MER1_type 0 219 1 2345 68 0 0 chr21 30264311 30264607 -14642963 - AluY SINE Alu -15 296 1 616 206 28 7 chr21 30264637 30264778 -14642792 - MLT1L LTR MaLR -347 268 125 434 314 128 0 chr21 30265392 30265564 -14642006 - MIR SINE MIR -6 256 63 2285 163 49 5 chr21 30265592 30265979 -14641591 + LTR57 LTR ERVL 1 404 -7 322 362 115 19 chr21 30266306 30266618 -14640952 + L2 LINE L2 2930 3271 -1 1305 239 40 3 chr21 30267923 30268290 -14639280 + LTR43 LTR ERV1 176 461 -51 220 247 339 16 chr21 30268435 30268621 -14638949 + L2 LINE L2 2540 2785 -529 9088 91 23 2 chr21 30268718 30270798 -14636772 - L1PA8 LINE L1 0 6172 4060 11044 104 11 0 chr21 30270798 30272417 -14635153 + L1PA8 LINE L1 2411 4046 -2100 375 299 19 0 chr21 30272476 30272583 -14634987 + L2 LINE L2 3203 3311 -2 432 327 6 0 chr21 30273135 30273331 -14634239 + (TG)n Simple_repeat Simple_repeat 1 197 0 461 368 6 0 chr21 30273360 30273534 -14634036 + (TG)n Simple_repeat Simple_repeat 1 175 0 428 356 0 5 chr21 30273564 30274011 -14633559 + (TG)n Simple_repeat Simple_repeat 1 444 0 213 328 0 0 chr21 30274025 30274089 -14633481 + (TG)n Simple_repeat Simple_repeat 1 64 0 207 0 0 0 chr21 30274936 30274959 -14632611 + (A)n Simple_repeat Simple_repeat 1 23 0 1356 177 50 22 chr21 30275126 30275545 -14632025 + L1MCa LINE L1 1420 1941 -4485 2232 77 7 3 chr21 30276627 30276924 -14630646 - AluSp SINE Alu -15 298 1 1616 182 7 0 chr21 30277025 30277327 -14630243 - AluSx SINE Alu 0 305 2 2313 61 0 7 chr21 30277476 30277769 -14629801 - AluY SINE Alu -19 292 2 1117 45 0 0 chr21 30278017 30278150 -14629420 + L1PA8 LINE L1 6038 6170 -2 312 48 0 0 chr21 30278178 30278220 -14629350 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 36 0 0 chr21 30278296 30278324 -14629246 + AT_rich Low_complexity Low_complexity 1 28 0 412 275 46 37 chr21 30278412 30278630 -14628940 - LTR33 LTR ERVL 0 521 302 318 301 32 49 chr21 30278867 30278990 -14628580 - L2 LINE L2 -8 3305 3185 806 246 24 19 chr21 30279473 30279680 -14627890 + MIR SINE MIR 50 257 -5 1914 136 3 7 chr21 30279734 30280029 -14627541 + AluSx SINE Alu 1 294 -18 2217 201 42 36 chr21 30280779 30281276 -14626294 + MER21B LTR ERV1 345 844 -19 1974 158 13 45 chr21 30281473 30281527 -14626043 - MLT1A1 LTR MaLR -3 362 308 2162 112 57 33 chr21 30281527 30281893 -14625677 + THE1C LTR MaLR 1 375 0 1974 158 13 45 chr21 30281893 30282212 -14625358 - MLT1A1 LTR MaLR -57 308 1 570 254 159 15 chr21 30282218 30282947 -14624623 - L1ME1 LINE L1 -48 6118 5267 582 133 0 0 chr21 30282993 30283076 -14624494 - FLAM SINE Alu -18 125 43 1635 267 52 55 chr21 30283077 30283406 -14624164 - L1ME1 LINE L1 -946 5200 4871 2024 100 35 0 chr21 30283406 30283695 -14623875 - AluSq SINE Alu -14 299 1 1635 267 52 55 chr21 30283695 30284294 -14623276 - L1ME1 LINE L1 -1275 4871 4275 1442 203 58 64 chr21 30284314 30284781 -14622789 - MLT1C LTR MaLR 0 467 4 744 53 0 0 chr21 30284891 30284985 -14622585 + AluY SINE Alu 203 296 -15 2176 102 3 3 chr21 30286590 30286894 -14620676 + AluSg SINE Alu 1 304 -6 900 210 62 0 chr21 30287098 30287274 -14620296 + MER20 DNA MER1_type 27 213 -6 2262 141 28 0 chr21 30287280 30287634 -14619936 - THE1B LTR MaLR 0 364 1 1772 197 30 0 chr21 30287801 30288131 -14619439 + MER58B DNA MER1_type 2 341 0 1792 166 0 0 chr21 30288317 30288606 -14618964 + AluJo SINE Alu 1 289 -23 345 335 73 22 chr21 30289333 30289691 -14617879 - L2 LINE L2 -1208 2106 1731 2289 120 11 37 chr21 30289789 30290163 -14617407 - THE1B LTR MaLR 0 364 1 496 263 88 75 chr21 30290875 30290963 -14616607 + MLT1G LTR MaLR 77 162 -428 1736 182 0 3 chr21 30290963 30291271 -14616299 - AluJb SINE Alu -5 307 1 496 263 88 75 chr21 30291271 30291658 -14615912 + MLT1G LTR MaLR 162 581 -9 797 188 0 0 chr21 30291773 30291906 -14615664 - FLAM_A SINE Alu 0 133 1 560 238 14 0 chr21 30292177 30292320 -14615250 - L1ME4a LINE L1 -18 6103 5959 518 295 125 18 chr21 30292328 30292693 -14614877 - L1ME4a LINE L1 -207 5914 5509 405 157 0 0 chr21 30292859 30292929 -14614641 - MER58 DNA MER1_type -35 2385 2316 217 300 0 0 chr21 30292944 30293004 -14614566 + L2 LINE L2 2309 2368 -946 243 319 42 0 chr21 30293017 30293089 -14614481 - MER58 DNA MER1_type -2345 75 1 276 111 0 0 chr21 30293566 30293611 -14613959 + (GA)n Simple_repeat Simple_repeat 2 46 0 391 265 100 80 chr21 30293684 30294537 -14613033 - L1ME4a LINE L1 -309 5812 4948 224 167 21 0 chr21 30294639 30294687 -14612883 + G-rich Low_complexity Low_complexity 2 50 0 21 36 0 0 chr21 30295452 30295480 -14612090 + AT_rich Low_complexity Low_complexity 1 28 0 240 283 38 57 chr21 30295542 30295648 -14611922 - MIR SINE MIR -139 123 20 1008 216 31 14 chr21 30296481 30296703 -14610867 - MIR SINE MIR -25 237 12 1998 129 7 0 chr21 30296854 30297148 -14610422 + AluSx SINE Alu 1 296 -16 181 191 70 139 chr21 30298107 30298222 -14609348 + MER5A DNA MER1_type 4 110 -79 * 761 249 69 23 chr21 30298203 30298420 -14609150 - MIR SINE MIR -8 254 28 1827 208 11 17 chr21 30299267 30299622 -14607948 + MLT2C1 LTR ERVL 1 467 -53 192 77 0 0 chr21 30299622 30299648 -14607922 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 1827 208 11 17 chr21 30299648 30299667 -14607903 + MLT2C1 LTR ERVL 467 485 -35 370 252 76 38 chr21 30299986 30300117 -14607453 + MER5A DNA MER1_type 52 187 -2 241 338 0 12 chr21 30300314 30300394 -14607176 + MIR SINE MIR 6 84 -178 289 232 17 89 chr21 30301537 30301592 -14605978 + MIR SINE MIR 30 87 -175 2520 97 28 22 chr21 30301592 30301954 -14605616 - THE1B LTR MaLR 0 364 1 289 232 17 89 chr21 30301954 30302080 -14605490 + MIR SINE MIR 87 259 -3 259 361 121 56 chr21 30302287 30302592 -14604978 + L2 LINE L2 2948 3272 0 233 219 14 0 chr21 30302592 30302665 -14604905 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 523 335 56 0 chr21 30303101 30303280 -14604290 + MIR3 SINE MIR 16 204 -4 761 288 10 0 chr21 30303428 30303633 -14603937 + MIR SINE MIR 55 261 -1 2531 173 15 22 chr21 30304262 30304725 -14602845 - MLT1C LTR MaLR -7 460 1 2149 104 0 0 chr21 30304757 30305054 -14602516 - AluSx SINE Alu -15 297 1 181 268 183 24 chr21 30305220 30305302 -14602268 - L3 LINE CR1 -116 1461 1367 2247 100 0 0 chr21 30305306 30305607 -14601963 - AluSx SINE Alu -1 311 11 233 274 16 13 chr21 30307075 30307185 -14600385 + MIR SINE MIR 37 150 -58 493 15 30 0 chr21 30307272 30307338 -14600232 + (CA)n Simple_repeat Simple_repeat 2 69 0 22 35 0 0 chr21 30307403 30307432 -14600138 + AT_rich Low_complexity Low_complexity 1 29 0 475 336 60 56 chr21 30307490 30307922 -14599648 - L1ME4a LINE L1 -1 6120 5687 446 309 78 53 chr21 30308181 30308439 -14599131 - L1ME4a LINE L1 -491 5630 5380 2047 109 0 3 chr21 30308439 30308749 -14598821 - AluSq SINE Alu 0 309 1 446 309 78 53 chr21 30308749 30309045 -14598525 - L1ME4a LINE L1 -741 5380 5024 597 340 94 38 chr21 30309096 30309625 -14597945 - L1ME4a LINE L1 -1191 4955 4397 346 199 108 167 chr21 30310129 30310315 -14597255 - MER5B DNA MER1_type -2 176 2 554 233 50 50 chr21 30310348 30310550 -14597020 - LTR67 LTR ERVL -16 541 340 272 172 52 142 chr21 30310566 30310799 -14596771 - MER69 DNA AcHobo -42 2484 2273 443 100 14 0 chr21 30310799 30310869 -14596701 + (TC)n Simple_repeat Simple_repeat 1 71 0 2160 114 0 0 chr21 30310869 30311166 -14596404 - AluSx SINE Alu -15 297 1 635 179 18 0 chr21 30311197 30311309 -14596261 - MLT1A2 LTR MaLR 0 374 261 290 272 140 0 chr21 30311325 30311439 -14596131 - MLT1A2 LTR MaLR -260 130 1 349 132 94 66 chr21 30311467 30311573 -14595997 - MER69 DNA AcHobo -299 2227 2119 2437 161 69 0 chr21 30311573 30312008 -14595562 - L1MC3 LINE L1 -35 7750 7286 617 200 26 19 chr21 30312010 30312165 -14595405 - MER69 DNA AcHobo -337 2189 2034 2208 240 47 16 chr21 30312173 30312732 -14594838 - MER69 DNA AcHobo -1950 576 1 664 288 44 15 chr21 30312769 30312974 -14594596 - LTR67 LTR ERVL -235 322 112 225 246 109 18 chr21 30313121 30313231 -14594339 + L1MC4a LINE L1 6055 6174 -1634 1839 125 44 7 chr21 30314111 30314476 -14593094 - AluSx SINE Alu 0 376 1 249 254 16 32 chr21 30315287 30315350 -14592220 + MER77 LTR ERV1 53 114 -491 862 120 0 0 chr21 30315352 30315477 -14592093 + AluY SINE Alu 181 305 -6 1834 238 94 12 chr21 30315477 30315933 -14591637 + MER77 LTR ERV1 130 601 -4 896 98 0 0 chr21 30316654 30316776 -14590794 + AluY SINE Alu 181 302 -9 569 231 0 8 chr21 30316776 30316897 -14590673 + MER77 LTR ERV1 130 249 -356 251 376 86 0 chr21 30317448 30317565 -14590005 - L2 LINE L2 0 3272 3146 447 243 48 49 chr21 30317640 30317803 -14589767 + MLT1J2 LTR MaLR 39 241 -270 474 205 26 0 chr21 30318327 30318444 -14589126 - L1ME2 LINE L1 -19 6145 6026 370 300 171 1 chr21 30318530 30318709 -14588861 - MIR SINE MIR -19 243 38 297 323 61 75 chr21 30318743 30319208 -14588362 - L2 LINE L2 -201 3071 2609 2221 104 0 0 chr21 30319345 30319644 -14587926 + AluSg SINE Alu 1 299 -11 1026 236 130 46 chr21 30319662 30320094 -14587476 + MLT1J LTR MaLR 2 469 -42 245 311 114 14 chr21 30320238 30320456 -14587114 + MIR SINE MIR 33 246 -16 2152 100 7 3 chr21 30320602 30320903 -14586667 - AluSc SINE Alu -7 302 1 346 318 14 40 chr21 30321424 30321572 -14585998 - MER5A DNA MER1_type 0 189 46 1842 196 79 43 chr21 30322660 30323076 -14584494 - MLT1C LTR MaLR -7 460 26 2271 113 51 25 chr21 30323076 30323431 -14584139 - THE1B LTR MaLR 0 364 1 1842 196 79 43 chr21 30323431 30323458 -14584112 - MLT1C LTR MaLR -441 26 1 494 183 11 40 chr21 30323540 30323715 -14583855 + CT-rich Low_complexity Low_complexity 1 170 0 594 254 130 72 chr21 30325007 30325353 -14582217 + MLT1J LTR MaLR 102 467 -44 2817 31 0 0 chr21 30325600 30325918 -14581652 + AluYb8 SINE Alu 1 318 0 210 71 0 0 chr21 30326397 30326425 -14581145 + (T)n Simple_repeat Simple_repeat 1 28 0 205 175 0 25 chr21 30326746 30326786 -14580784 + C-rich Low_complexity Low_complexity 2 40 0 1392 241 31 47 chr21 30326911 30327281 -14580289 + MLT1I LTR MaLR 70 403 -6 2125 112 50 34 chr21 30327513 30327871 -14579699 - THE1B LTR MaLR 0 364 1 589 259 41 0 chr21 30328066 30328213 -14579357 + MIR SINE MIR 26 178 -84 2182 108 23 3 chr21 30328495 30328801 -14578769 - AluSx SINE Alu 0 312 1 194 316 0 13 chr21 30329452 30329528 -14578042 - L3 LINE CR1 -606 971 897 268 345 80 0 chr21 30329583 30329696 -14577874 + MIR SINE MIR 23 144 -64 209 194 0 0 chr21 30329696 30329732 -14577838 + (CAT)n Simple_repeat Simple_repeat 3 38 0 438 320 60 0 chr21 30330048 30330198 -14577372 - MIR SINE MIR -68 194 36 817 228 27 23 chr21 30330206 30330425 -14577145 - MIR SINE MIR -10 252 33 706 303 134 75 chr21 30331235 30332215 -14575355 - L3 LINE CR1 -161 1416 365 2218 110 0 23 chr21 30332215 30332525 -14575045 + AluSx SINE Alu 1 303 -9 706 303 134 75 chr21 30332525 30332624 -14574946 - L3 LINE CR1 -1212 365 273 1043 261 77 23 chr21 30332635 30332984 -14574586 + MLT1K LTR MaLR 169 536 -52 761 224 33 0 chr21 30333050 30333233 -14574337 - L1M4 LINE L1 -3145 3001 2813 482 266 111 65 chr21 30333627 30333980 -14573590 + MLT1K LTR MaLR 210 578 -10 1529 210 88 34 chr21 30333988 30334430 -14573140 + MLT1C LTR MaLR 1 466 -1 3825 97 8 6 chr21 30334489 30334993 -14572577 + MER1A DNA MER1_type 25 529 0 197 339 37 28 chr21 30335237 30335346 -14572224 + MIR SINE MIR 37 146 -62 441 278 68 29 chr21 30335545 30335750 -14571820 + MLT1L LTR MaLR 179 391 -224 286 263 61 20 chr21 30335789 30335888 -14571682 + MLT1L LTR MaLR 466 568 -47 2266 119 36 28 chr21 30335979 30336340 -14571230 - THE1B LTR MaLR 0 364 1 2098 250 41 28 chr21 30337116 30337727 -14569843 - L1ME1 LINE L1 -5 6161 5543 881 204 49 83 chr21 30337725 30337853 -14569717 - L1ME1 LINE L1 -987 5159 5028 * 2006 113 3 33 chr21 30337853 30338153 -14569417 + AluSx SINE Alu 1 291 -21 881 204 49 83 chr21 30338153 30338348 -14569222 - L1ME1 LINE L1 -1118 5028 4847 1143 128 0 0 chr21 30338348 30338504 -14569066 + AluSg/x SINE Alu 148 303 -9 5967 174 55 26 chr21 30338514 30340221 -14567349 + L1MC1 LINE L1 4603 6326 -7 2789 237 75 40 chr21 30340227 30341063 -14566507 - L1ME1 LINE L1 -1287 4859 3982 2282 110 3 0 chr21 30341063 30341371 -14566199 + AluSg SINE Alu 1 309 -1 2789 237 75 40 chr21 30341371 30341524 -14566046 - L1ME1 LINE L1 -2164 3982 3836 696 150 0 8 chr21 30341678 30341798 -14565772 - L1PA15 LINE L1 0 6165 6047 538 284 30 0 chr21 30341803 30341972 -14565598 - L1ME1 LINE L1 -2329 3817 3644 534 243 7 29 chr21 30342022 30342158 -14565412 + L2 LINE L2 3181 3313 0 641 264 0 0 chr21 30342321 30342465 -14565105 + MIR SINE MIR 31 174 -88 2212 91 7 3 chr21 30344014 30344329 -14563241 + AluSq SINE Alu 1 316 0 185 242 0 65 chr21 30345292 30345354 -14562216 + MIR3 SINE MIR 99 156 -52 1805 169 26 20 chr21 30345514 30345858 -14561712 + MLT2C1 LTR ERVL 3 348 -49 267 79 0 0 chr21 30345861 30345899 -14561671 + (TC)n Simple_repeat Simple_repeat 2 39 0 34 42 0 0 chr21 30345899 30345947 -14561623 + AT_rich Low_complexity Low_complexity 1 48 0 331 89 0 25 chr21 30345947 30345964 -14561606 + MLT2C1 LTR ERVL 356 372 -25 884 88 41 0 chr21 30345964 30346135 -14561435 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 331 89 0 25 chr21 30346135 30346179 -14561391 + MLT2C1 LTR ERVL 372 397 0 378 249 45 85 chr21 30346380 30346581 -14560989 + MER112 DNA MER1_type 13 205 -55 372 339 176 3 chr21 30346780 30347081 -14560489 + LTR16C LTR ERVL 138 490 -1 229 250 81 32 chr21 30347081 30347205 -14560365 - L3 LINE CR1 -51 1526 1397 318 221 39 0 chr21 30347333 30347410 -14560160 - L1MB8 LINE L1 0 6178 6099 2094 132 10 0 chr21 30347468 30347763 -14559807 - AluSg SINE Alu -12 298 1 2023 138 24 18 chr21 30347763 30348104 -14559466 - L1MB8 LINE L1 -1 6177 5835 5417 124 17 10 chr21 30348117 30348936 -14558634 - Tigger1 DNA MER2_type -1463 955 131 2259 118 3 16 chr21 30349047 30349362 -14558208 - AluSx SINE Alu -1 311 1 294 348 10 30 chr21 30349988 30350157 -14557413 + MIR SINE MIR 9 170 -67 2286 101 3 3 chr21 30350800 30351098 -14556472 + AluSc SINE Alu 1 298 -11 5075 88 10 31 chr21 30351597 30352303 -14555267 + LTR8 LTR ERV1 1 691 0 3527 232 97 102 chr21 30353735 30354189 -14553381 + HAL1 LINE L1 378 833 -1674 884 125 22 0 chr21 30354189 30354325 -14553245 - L1MB5 LINE L1 -8 6166 6028 3527 232 97 102 chr21 30354325 30355227 -14552343 + HAL1 LINE L1 833 1738 -769 2604 56 0 3 chr21 30355227 30355531 -14552039 - AluY SINE Alu -8 303 1 3527 232 97 102 chr21 30355531 30355592 -14551978 + HAL1 LINE L1 1738 1798 -709 2242 130 0 0 chr21 30355592 30355893 -14551677 + AluSx SINE Alu 1 301 -11 3527 232 97 102 chr21 30355893 30356277 -14551293 + HAL1 LINE L1 1798 2182 -325 1733 101 31 0 chr21 30356277 30356535 -14551035 - L1MA2 LINE L1 0 6304 6039 3527 232 97 102 chr21 30356535 30356730 -14550840 + HAL1 LINE L1 2182 2369 -138 1982 137 20 10 chr21 30356730 30357030 -14550540 + AluJb SINE Alu 1 303 -9 3527 232 97 102 chr21 30357030 30357165 -14550405 + HAL1 LINE L1 2369 2503 -4 219 343 65 46 chr21 30357615 30357723 -14549847 + L2 LINE L2 3162 3271 -1 587 282 114 13 chr21 30357861 30358088 -14549482 - MIR SINE MIR 0 262 13 1986 171 43 0 chr21 30358588 30358938 -14548632 + MLT1A1 LTR MaLR 1 365 0 295 216 40 14 chr21 30359077 30359151 -14548419 + MLT1H LTR MaLR 7 82 -467 674 235 126 11 chr21 30359174 30359357 -14548213 + MLT1H LTR MaLR 346 549 0 509 254 66 56 chr21 30359573 30359786 -14547784 + MLT1J LTR MaLR 5 219 -292 2191 123 7 3 chr21 30359853 30360344 -14547226 + AluSx SINE Alu 1 492 0 218 281 18 0 chr21 30360566 30360623 -14546947 - MIR SINE MIR -112 150 93 558 232 137 92 chr21 30360727 30361128 -14546442 + MLT1H LTR MaLR 130 548 -1 223 359 0 13 chr21 30361132 30361210 -14546360 - MIR SINE MIR -180 82 6 303 271 115 10 chr21 30361977 30362073 -14545497 - MLT1G3 LTR MaLR -411 119 14 507 292 23 29 chr21 30362507 30362678 -14544892 - MIR SINE MIR -33 229 60 326 250 95 26 chr21 30362684 30362800 -14544770 - MIR SINE MIR -65 143 20 2026 113 0 0 chr21 30363253 30363519 -14544051 + AluSx SINE Alu 15 280 -32 312 27 0 0 chr21 30363521 30363558 -14544012 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2320 105 0 3 chr21 30364246 30364559 -14543011 + AluSx SINE Alu 1 312 0 249 164 45 30 chr21 30365575 30365642 -14541928 + L2 LINE L2 3205 3272 0 186 324 0 28 chr21 30366633 30366704 -14540866 - MIR SINE MIR -58 150 82 1524 200 131 49 chr21 30367018 30367484 -14540086 + MLT1D LTR MaLR 2 505 0 334 316 81 0 chr21 30367578 30367714 -14539856 - L2 LINE L2 -2 3311 3165 302 272 219 42 chr21 30367955 30368126 -14539444 - L2 LINE L2 -530 2784 2645 4206 153 33 39 chr21 30368126 30368916 -14538654 + LTR1 LTR ERV1 1 785 0 302 272 219 42 chr21 30368916 30369101 -14538469 - L2 LINE L2 -669 2645 2365 253 275 65 94 chr21 30369118 30369256 -14538314 - MER94 DNA DNA 0 134 1 268 227 45 15 chr21 30369472 30369538 -14538032 - MER58 DNA MER1_type -10 2410 2343 1194 122 11 11 chr21 30369538 30369718 -14537852 + THE1A LTR MaLR 1 180 -175 2019 139 19 44 chr21 30369726 30370086 -14537484 + THE1B LTR MaLR 14 364 0 515 262 103 0 chr21 30370081 30370226 -14537344 - MER58A DNA MER1_type 0 162 3 * 353 176 99 22 chr21 30371031 30371122 -14536448 - L1ME4a LINE L1 -50 6071 5974 459 299 7 0 chr21 30371236 30371380 -14536190 - L1ME4a LINE L1 -341 5780 5636 237 338 68 30 chr21 30372173 30372306 -14535264 - MER5B DNA MER1_type 0 178 41 313 196 10 108 chr21 30374463 30374565 -14533005 + MER39B LTR ERV1 2 93 -560 * 2088 160 17 98 chr21 30374540 30374869 -14532701 + MER39 LTR ERV1 260 541 -166 1545 171 51 25 chr21 30374869 30375144 -14532426 - AluJo SINE Alu -30 282 1 2088 160 17 98 chr21 30375144 30375283 -14532287 + MER39 LTR ERV1 541 690 -17 2153 112 14 0 chr21 30375285 30375580 -14531990 - AluSp SINE Alu -14 299 1 1412 218 80 49 chr21 30375728 30376218 -14531352 - MLT1D LTR MaLR 0 505 1 262 113 0 57 chr21 30376500 30376553 -14531017 - MER113 DNA MER1_type? -367 154 105 251 266 81 97 chr21 30376666 30376790 -14530780 + L2 LINE L2 3151 3272 0 1674 234 61 74 chr21 30377352 30377724 -14529846 + L1ME LINE L1 498 873 -5207 2195 108 3 16 chr21 30377724 30378038 -14529532 + AluSx SINE Alu 1 310 -2 1674 234 61 74 chr21 30378038 30378820 -14528750 + L1ME LINE L1 873 1606 -4474 434 289 82 7 chr21 30378861 30378996 -14528574 + MLT2E LTR ERVL 33 177 -451 6193 255 80 8 chr21 30378998 30380619 -14526951 + ERVL-E LTR ERVL 3661 5397 -367 422 223 93 22 chr21 30380685 30380824 -14526746 + ERVL-E LTR ERVL 5604 5752 -12 1587 113 40 5 chr21 30380825 30381047 -14526523 + MER30 DNA MER1_type 1 230 0 2469 228 32 41 chr21 30381055 30381180 -14526390 + MLT2E LTR ERVL 1 126 -502 2195 73 0 60 chr21 30381180 30381517 -14526053 + AluY SINE Alu 1 319 0 2469 228 32 41 chr21 30381517 30381968 -14525602 + MLT2E LTR ERVL 126 574 -54 502 60 0 200 chr21 30381968 30382068 -14525502 - MADE1 DNA Mariner 0 80 1 2469 228 32 41 chr21 30382068 30382117 -14525453 + MLT2E LTR ERVL 574 622 -6 2004 220 49 30 chr21 30382159 30382709 -14524861 - MLT2B3 LTR ERVL -10 520 2 534 281 35 18 chr21 30382712 30382883 -14524687 - MLT1I LTR MaLR -217 192 19 402 157 0 67 chr21 30383155 30383233 -14524337 - L1MC2 LINE L1 -11 6333 6260 5247 78 71 7 chr21 30383233 30383699 -14523871 - MER4E LTR ERV1 0 766 236 180 0 0 0 chr21 30383699 30383719 -14523851 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 5247 78 71 7 chr21 30383719 30383972 -14523598 - MER4E LTR ERV1 -530 236 1 6804 145 24 14 chr21 30384819 30386792 -14520778 - MER4E-int LTR ERV1 -107 6651 4452 3073 143 81 67 chr21 30386791 30387104 -14520466 - MER4E-int LTR ERV1 -2670 4088 3781 * 2022 117 0 55 chr21 30387104 30387430 -14520140 - AluSg SINE Alu -2 308 1 3073 143 81 67 chr21 30387430 30387757 -14519813 - MER4E-int LTR ERV1 -2977 3781 3439 7730 113 78 33 chr21 30387761 30388533 -14519037 - MER4E-int LTR ERV1 -3660 3098 2362 2257 116 0 0 chr21 30388533 30388836 -14518734 - AluSp SINE Alu -10 303 1 7730 113 78 33 chr21 30388836 30389590 -14517980 - MER4E-int LTR ERV1 -4396 2362 1504 5650 75 19 0 chr21 30389590 30390332 -14517238 - MER4E LTR ERV1 -10 756 1 447 19 0 0 chr21 30390347 30390399 -14517171 + (CA)n Simple_repeat Simple_repeat 2 53 0 230 139 0 0 chr21 30390401 30390437 -14517133 - L1MC3 LINE L1 -94 7691 7656 1711 154 8 44 chr21 30390437 30390708 -14516862 - MER4A LTR ERV1 0 664 348 2188 88 56 0 chr21 30390708 30390992 -14516578 - AluSp SINE Alu -13 300 1 1711 154 8 44 chr21 30390992 30391078 -14516492 - MER4A LTR ERV1 -316 348 261 623 128 20 10 chr21 30391075 30391177 -14516393 - MER4A LTR ERV1 -561 103 1 * 1562 169 22 29 chr21 30391177 30391491 -14516079 - L1MC3 LINE L1 -127 7658 7347 2080 115 0 3 chr21 30391532 30391853 -14515717 - AluSx SINE Alu 0 320 1 256 357 62 0 chr21 30391891 30392020 -14515550 - MIR SINE MIR -123 139 3 296 311 140 26 chr21 30392048 30392241 -14515329 - MIR SINE MIR -36 226 12 263 309 66 104 chr21 30392344 30392797 -14514773 + L2 LINE L2 2836 3271 -1 1802 150 147 27 chr21 30393901 30394275 -14513295 - MSTB1 LTR MaLR -13 419 1 186 118 0 0 chr21 30394693 30394727 -14512843 + (TA)n Simple_repeat Simple_repeat 1 34 0 2001 91 38 0 chr21 30395113 30395378 -14512192 + AluSp SINE Alu 1 275 -38 276 160 120 0 chr21 30395379 30395454 -14512116 + L1MC4a LINE L1 7414 7497 -311 180 77 0 0 chr21 30395460 30395486 -14512084 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 257 125 0 21 chr21 30395668 30395716 -14511854 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 727 278 58 8 chr21 30396097 30396393 -14511177 + L1MC3 LINE L1 5924 6146 -20 * 1837 160 52 34 chr21 30396392 30396644 -14510926 + L1MD3 LINE L1 6712 6975 -1020 180 77 0 0 chr21 30396644 30396670 -14510900 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1837 160 52 34 chr21 30396670 30396804 -14510766 + L1MD3 LINE L1 6975 7105 -890 376 162 33 70 chr21 30396804 30396911 -14510659 + MLT1F1 LTR MaLR 35 167 -382 335 206 0 0 chr21 30396911 30396974 -14510596 + L1MD3 LINE L1 7408 7470 -525 * 674 173 6 89 chr21 30396971 30397139 -14510431 + L1PA16 LINE L1 6008 6161 -5 625 292 160 30 chr21 30397261 30397989 -14509581 + L1M4b LINE L1 1312 1944 -5194 1421 222 37 60 chr21 30397989 30398372 -14509198 + MLT1A2 LTR MaLR 1 374 0 625 292 160 30 chr21 30398372 30398996 -14508574 + L1M4b LINE L1 1944 3041 -4097 5001 215 65 25 chr21 30399019 30400216 -14507354 + L1M4 LINE L1 29 1273 -5269 1063 110 55 0 chr21 30400214 30400377 -14507193 + L1P4 LINE L1 5634 5805 -361 * 412 229 184 0 chr21 30400378 30400487 -14507083 + L1MB7 LINE L1 373 501 -6041 897 233 20 8 chr21 30400501 30400750 -14506820 + L1MB7 LINE L1 1294 1545 -4997 3853 197 9 32 chr21 30400775 30401507 -14506063 + L1MB7 LINE L1 4220 4930 -1714 2258 154 12 3 chr21 30401507 30401852 -14505718 - MER7A DNA MER2_type 0 346 1 3853 197 9 32 chr21 30401852 30401999 -14505571 + L1MB7 LINE L1 4930 5079 -1565 2997 163 8 0 chr21 30401998 30402490 -14505080 + L1MA9 LINE L1 5285 5780 -532 * 387 127 99 0 chr21 30402503 30402574 -14504996 + L1MA9 LINE L1 6202 6279 -33 2406 193 48 64 chr21 30402578 30403248 -14504322 + L1MB7 LINE L1 5063 5721 -923 4075 167 59 7 chr21 30403252 30404012 -14503558 + L1MB7 LINE L1 5878 6677 -5 2194 93 0 0 chr21 30404017 30404296 -14503274 - AluSc SINE Alu -2 307 29 2140 252 103 23 chr21 30404333 30404503 -14503067 + L1M4 LINE L1 2720 2875 -3769 443 161 46 11 chr21 30404503 30404590 -14502980 + L1PA5 LINE L1 6048 6137 -17 2140 252 103 23 chr21 30404590 30405019 -14502551 + L1M4 LINE L1 2875 3269 -3375 7303 126 58 16 chr21 30405019 30405589 -14501981 - Tigger3b DNA MER2_type -1797 1231 687 1987 147 3 10 chr21 30405589 30405896 -14501674 + AluSg SINE Alu 1 305 -5 7303 126 58 16 chr21 30405896 30406505 -14501065 - Tigger3b DNA MER2_type -2341 687 2 2140 252 103 23 chr21 30406505 30406860 -14500710 + L1M4 LINE L1 3269 3713 -2931 2629 222 49 94 chr21 30406879 30407964 -14499606 + L1M4 LINE L1 4060 5088 -1556 1656 191 0 16 chr21 30407964 30408273 -14499297 - AluJo SINE Alu 0 312 9 2629 222 49 94 chr21 30408273 30408383 -14499187 + L1M4 LINE L1 5088 5201 -1443 914 246 108 49 chr21 30408583 30409221 -14498349 - L1MEd LINE L1 -4794 1516 784 219 188 0 0 chr21 30409493 30409541 -14498029 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 239 87 11 chr21 30409630 30409722 -14497848 - L1MEd LINE L1 -5973 146 48 528 278 127 15 chr21 30410542 30410801 -14496769 - L1ME LINE L1 -400 5770 5483 2720 176 45 27 chr21 30411003 30411514 -14496056 + MLT2B1 LTR ERVL 1 520 0 647 288 94 4 chr21 30411899 30412132 -14495438 + MIR SINE MIR 9 262 0 349 242 111 59 chr21 30412195 30412348 -14495222 + MER117 DNA MER1_type 9 169 -28 357 257 149 47 chr21 30412753 30412901 -14494669 + MIR3 SINE MIR 33 195 -13 483 264 33 101 chr21 30413660 30413967 -14493603 + MARNA DNA Mariner 152 437 -149 205 318 47 40 chr21 30415708 30415856 -14491714 + L2 LINE L2 2904 3052 -220 209 361 50 8 chr21 30416410 30416529 -14491041 + L2 LINE L2 3137 3260 -12 1487 227 17 32 chr21 30417830 30417893 -14489677 - LTR40b LTR ERVL 0 462 400 1747 172 28 89 chr21 30417893 30418288 -14489282 + MLT1A2 LTR MaLR 4 374 0 1487 227 17 32 chr21 30418288 30418572 -14488998 - LTR40b LTR ERVL -62 400 120 563 182 18 0 chr21 30418855 30418965 -14488605 - LTR40a LTR ERVL -404 115 4 1876 167 0 22 chr21 30419323 30419640 -14487930 - AluJb SINE Alu -2 310 1 274 299 104 0 chr21 30421155 30421232 -14486338 + L2 LINE L2 3229 3313 0 1722 166 29 16 chr21 30421369 30421676 -14485894 + AluJo SINE Alu 1 311 -1 2281 115 0 3 chr21 30421683 30421995 -14485575 + AluSq SINE Alu 1 311 -2 531 56 0 0 chr21 30423528 30423599 -14483971 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 818 194 107 25 chr21 30423914 30424110 -14483460 - MER20 DNA MER1_type -3 216 5 439 203 78 2 chr21 30424277 30424390 -14483180 + L1P5 LINE L1 5675 5791 -365 2082 175 16 10 chr21 30424415 30424439 -14483131 + L1PB4 LINE L1 5754 5776 -380 2270 97 3 7 chr21 30424439 30424737 -14482833 + AluSp SINE Alu 1 297 -16 2082 175 16 10 chr21 30424737 30425100 -14482470 + L1PB4 LINE L1 5776 6143 -13 189 0 0 0 chr21 30425111 30425132 -14482438 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 254 224 0 0 chr21 30425134 30425201 -14482369 - Charlie4 DNA MER1_type -84 1877 1811 910 269 16 8 chr21 30425220 30425473 -14482097 - Charlie4 DNA MER1_type -1677 284 30 257 319 50 14 chr21 30425512 30425653 -14481917 + MLT1K LTR MaLR 118 263 -325 2126 132 0 0 chr21 30425799 30426095 -14481475 + AluSx SINE Alu 1 296 -16 1688 208 102 33 chr21 30426107 30426521 -14481049 + MLT2B1 LTR ERVL 1 482 -72 2156 112 24 0 chr21 30426521 30426815 -14480755 - AluSx SINE Alu -11 301 1 1688 208 102 33 chr21 30426815 30426842 -14480728 + MLT2B1 LTR ERVL 482 506 -48 246 165 24 12 chr21 30426845 30426930 -14480640 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 231 139 0 0 chr21 30426931 30426967 -14480603 + MLT2C1 LTR ERVL 355 390 -7 33 0 0 0 chr21 30428369 30428402 -14479168 + AT_rich Low_complexity Low_complexity 1 33 0 298 140 0 0 chr21 30428939 30428989 -14478581 + Alu SINE Alu 259 308 0 2307 101 7 0 chr21 30429587 30429894 -14477676 + AluSx SINE Alu 1 309 -3 208 191 43 0 chr21 30429905 30429952 -14477618 + MER5A DNA MER1_type 61 109 -80 1261 204 5 0 chr21 30430126 30430347 -14477223 - MER58A DNA MER1_type -2 222 1 2420 78 0 16 chr21 30430491 30430799 -14476771 - AluY SINE Alu -8 303 1 1815 171 100 3 chr21 30431007 30431346 -14476224 - MSTB LTR MaLR -4 422 51 1459 249 90 86 chr21 30431466 30431600 -14475970 + HAL1 LINE L1 639 771 -1736 1984 140 26 13 chr21 30431600 30431907 -14475663 + AluJo SINE Alu 1 311 -1 1459 249 90 86 chr21 30431907 30432068 -14475502 + HAL1 LINE L1 771 930 -1577 1915 178 3 0 chr21 30432068 30432377 -14475193 + AluJb SINE Alu 1 310 -2 1459 249 90 86 chr21 30432377 30432534 -14475036 + HAL1 LINE L1 930 1085 -1422 3516 142 20 8 chr21 30432534 30433124 -14474446 - L1MB3 LINE L1 -16 6167 5571 1459 249 90 86 chr21 30433124 30433667 -14473903 + HAL1 LINE L1 1085 1640 -867 2143 131 10 7 chr21 30433675 30433980 -14473590 - AluJo SINE Alu -6 306 1 237 222 117 74 chr21 30434109 30434278 -14473292 + HAL1 LINE L1 1854 2037 -470 2120 138 0 0 chr21 30434278 30434583 -14472987 + AluSg SINE Alu 1 305 -5 237 222 117 74 chr21 30434583 30434643 -14472927 + HAL1 LINE L1 2037 2093 -414 1743 149 65 0 chr21 30434684 30434959 -14472611 + AluSx SINE Alu 1 293 -19 305 299 62 53 chr21 30434998 30435159 -14472411 + LTR16C LTR ERVL 196 361 -130 2438 52 3 0 chr21 30435159 30435445 -14472125 - AluY SINE Alu -5 306 20 305 299 62 53 chr21 30435445 30435527 -14472043 + LTR16C LTR ERVL 361 441 -50 497 194 8 40 chr21 30436615 30436739 -14470831 + HAL1 LINE L1 2091 2210 -297 453 321 142 30 chr21 30436768 30437260 -14470310 - LTR67 LTR ERVL -6 551 5 527 268 52 22 chr21 30437266 30437497 -14470073 + HAL1 LINE L1 2270 2507 0 210 167 0 0 chr21 30437723 30437759 -14469811 + T-rich Low_complexity Low_complexity 1 36 0 775 196 64 35 chr21 30437915 30438088 -14469482 + MER45A DNA AcHobo 1 178 0 3103 108 7 0 chr21 30438273 30438698 -14468872 + MSTA LTR MaLR 1 428 0 215 289 48 58 chr21 30439519 30439547 -14468023 - MIR SINE MIR -74 188 161 487 104 39 0 chr21 30439547 30439624 -14467946 - MADE1 DNA Mariner 0 80 1 215 289 48 58 chr21 30439624 30439656 -14467914 - MIR SINE MIR -101 161 130 2522 119 5 11 chr21 30439656 30440033 -14467537 + THE1C LTR MaLR 1 375 0 215 289 48 58 chr21 30440033 30440075 -14467495 - MIR SINE MIR -132 130 86 693 230 41 10 chr21 30440203 30440399 -14467171 + MIR SINE MIR 61 262 0 2187 130 0 0 chr21 30441102 30441402 -14466168 - AluSx SINE Alu -12 300 1 2350 134 22 3 chr21 30442698 30443055 -14464515 + THE1B LTR MaLR 1 364 0 1171 269 51 22 chr21 30443092 30443501 -14464069 + L1MC4a LINE L1 5501 5921 -1887 993 178 205 9 chr21 30443761 30444060 -14463510 - MLT1D LTR MaLR -79 426 1 7184 208 56 43 chr21 30446065 30447973 -14459597 + L1M4 LINE L1 5 1888 -4937 2525 87 0 0 chr21 30447973 30448283 -14459287 + AluY SINE Alu 1 310 -1 7184 208 56 43 chr21 30448283 30448878 -14458692 + L1M4 LINE L1 1888 2669 -4156 2020 112 0 11 chr21 30448878 30449146 -14458424 + AluSx SINE Alu 35 299 -13 7184 208 56 43 chr21 30449146 30449213 -14458357 + L1M4 LINE L1 2669 2734 -4091 34141 90 6 58 chr21 30449246 30451661 -14455909 + L1PA2 LINE L1 12 2553 -3602 1946 116 20 50 chr21 30451661 30451963 -14455607 + AluSg1 SINE Alu 3 295 -14 34141 90 6 58 chr21 30451963 30452711 -14454859 + L1PA2 LINE L1 2553 3339 -2816 2281 102 3 16 chr21 30452711 30453024 -14454546 + AluY SINE Alu 1 309 -2 34141 90 6 58 chr21 30453024 30456355 -14451215 + L1PA2 LINE L1 3339 6155 0 9000 198 46 21 chr21 30456394 30458141 -14449429 + L1M4 LINE L1 2714 4532 -2112 2243 117 0 0 chr21 30458141 30458448 -14449122 - AluSg SINE Alu -3 307 1 9000 198 46 21 chr21 30458448 30458983 -14448587 + L1M4 LINE L1 4532 5052 -1592 332 164 16 0 chr21 30460377 30460438 -14447132 + MIR SINE MIR 94 155 -107 2578 183 28 28 chr21 30460642 30461014 -14446556 + L1MA9 LINE L1 5331 5702 -976 2173 113 3 7 chr21 30461014 30461314 -14446256 + AluSx SINE Alu 1 299 -13 2578 183 28 28 chr21 30461314 30461718 -14445852 + L1MA9 LINE L1 5702 6106 -572 2101 71 4 0 chr21 30461718 30462001 -14445569 + AluY SINE Alu 26 309 0 2578 183 28 28 chr21 30462001 30462184 -14445386 + L1MA9 LINE L1 6105 6287 -391 224 220 0 0 chr21 30462185 30462244 -14445326 + (TA)n Simple_repeat Simple_repeat 1 59 0 221 284 28 14 chr21 30462261 30462402 -14445168 + (CATATA)n Simple_repeat Simple_repeat 2 144 0 * 426 225 11 53 chr21 30462299 30462486 -14445084 + (TA)n Simple_repeat Simple_repeat 2 180 0 251 96 19 58 chr21 30462503 30462555 -14445015 - L1M3 LINE L1 -343 5837 5788 1815 178 5 26 chr21 30462595 30462972 -14444598 + L1MA9 LINE L1 6279 6647 -163 1807 168 71 0 chr21 30463932 30464284 -14443286 + L1MC3 LINE L1 7400 7776 -9 2191 128 136 8 chr21 30464587 30464963 -14442607 + MSTB LTR MaLR 1 424 -2 308 210 32 0 chr21 30465102 30465164 -14442406 - MER117 DNA MER1_type -43 154 91 1521 210 121 17 chr21 30465167 30465571 -14441999 + LTR16A1 LTR ERVL 4 449 -8 388 127 13 51 chr21 30465565 30465644 -14441926 - MER117 DNA MER1_type -120 77 2 * 21 0 0 0 chr21 30466128 30466149 -14441421 + AT_rich Low_complexity Low_complexity 1 21 0 2309 81 0 29 chr21 30466154 30466461 -14441109 + AluY SINE Alu 1 298 -13 1067 256 84 53 chr21 30466502 30466955 -14440615 - MLT1J LTR MaLR -33 478 12 1092 235 44 30 chr21 30467140 30467438 -14440132 + MLT1I LTR MaLR 108 409 0 767 303 76 28 chr21 30467864 30468221 -14439349 - MLT1L LTR MaLR -5 610 237 512 192 0 19 chr21 30468310 30468414 -14439156 - MLT1I LTR MaLR -3 406 305 269 269 26 13 chr21 30469116 30469194 -14438376 + L1ME4a LINE L1 5973 6051 -70 1723 169 53 42 chr21 30470250 30470606 -14436964 + MLT1A1 LTR MaLR 5 364 -1 202 243 100 43 chr21 30470641 30470711 -14436859 + MIR SINE MIR 119 192 -70 21 0 0 0 chr21 30471427 30471448 -14436122 + AT_rich Low_complexity Low_complexity 1 21 0 2416 31 3 7 chr21 30471935 30472241 -14435329 - AluY SINE Alu 0 311 1 261 260 140 0 chr21 30472731 30472831 -14434739 - L2 LINE L2 -13 3259 3146 1861 231 140 14 chr21 30472968 30473791 -14433779 + L1ME1 LINE L1 4761 5716 -745 562 99 0 3 chr21 30473797 30474044 -14433526 + AluSx SINE Alu 1 309 -1 1886 182 30 20 chr21 30474045 30474451 -14433119 + L1ME1 LINE L1 5711 6120 -46 266 208 69 88 chr21 30474337 30474496 -14433074 + L1MA10 LINE L1 6169 6324 -10 * 1801 169 14 0 chr21 30474516 30474795 -14432775 + AluJb SINE Alu 1 283 -29 198 0 0 0 chr21 30474797 30474819 -14432751 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 269 248 76 98 chr21 30474827 30475194 -14432376 + L1M4 LINE L1 4664 5022 -1124 2606 146 26 0 chr21 30475899 30476316 -14431254 - MSTA LTR MaLR 0 428 1 1919 202 16 5 chr21 30477564 30477949 -14429621 + MLT1B LTR MaLR 1 467 0 304 115 82 16 chr21 30478221 30478282 -14429288 + MLT1K LTR MaLR 509 573 -15 313 282 88 28 chr21 30478337 30478462 -14429108 - MIR SINE MIR -58 150 22 239 265 0 44 chr21 30478483 30478551 -14429019 + L2 LINE L2 3203 3267 -5 1150 158 57 6 chr21 30479647 30479981 -14427589 - MSTB LTR MaLR 0 432 1 274 267 0 0 chr21 30479989 30480064 -14427506 - MIR SINE MIR -71 191 117 2517 107 16 16 chr21 30480906 30481281 -14426289 + THE1C LTR MaLR 1 375 0 231 167 0 0 chr21 30481397 30481439 -14426131 + CT-rich Low_complexity Low_complexity 1 42 0 1264 164 5 19 chr21 30482046 30482254 -14425316 + AluJo SINE Alu 85 289 -23 623 152 7 15 chr21 30482254 30482527 -14425043 + GA-rich Low_complexity Low_complexity 1 270 0 2114 93 22 0 chr21 30484018 30484287 -14423283 + AluSg SINE Alu 1 275 -35 2153 87 45 14 chr21 30484319 30484606 -14422964 + AluSq SINE Alu 1 296 -17 210 253 205 24 chr21 30484714 30484797 -14422773 - MIR SINE MIR -69 139 42 585 266 139 28 chr21 30484902 30485290 -14422280 + L1ME4a LINE L1 5673 6103 -18 2102 125 0 7 chr21 30485296 30485593 -14421977 - AluSx SINE Alu -16 296 2 2316 89 0 7 chr21 30485669 30485973 -14421597 + AluY SINE Alu 1 302 -9 332 282 94 0 chr21 30486550 30486667 -14420903 - MER94 DNA DNA 0 134 7 239 243 61 77 chr21 30487699 30487880 -14419690 - MIR3 SINE MIR -28 180 3 471 78 0 0 chr21 30488895 30488959 -14418611 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 1467 169 15 15 chr21 30488968 30489234 -14418336 - AluJo SINE Alu -46 266 1 307 282 0 0 chr21 30490364 30490435 -14417135 - L2 LINE L2 -211 3061 2991 2092 99 7 0 chr21 30490791 30491063 -14416507 + AluSx SINE Alu 1 274 -38 387 225 17 25 chr21 30491676 30491796 -14415774 - L2 LINE L2 -82 3231 3113 387 269 63 17 chr21 30492137 30492312 -14415258 + MIR SINE MIR 70 252 -10 2176 113 0 17 chr21 30493374 30493674 -14413896 + AluSx SINE Alu 1 295 -17 332 217 0 0 chr21 30493887 30493947 -14413623 + MER63 DNA MER1_type 692 751 -85 318 163 0 0 chr21 30493948 30493997 -14413573 + MER63 DNA MER1_type 979 1027 -35 280 252 304 0 chr21 30494172 30494386 -14413184 + L1ME4a LINE L1 5811 6089 -32 241 320 86 34 chr21 30494541 30494716 -14412854 - MIR SINE MIR -42 220 37 6995 120 135 114 chr21 30495209 30496883 -14410687 + pTR5 LTR ERV1 375 2438 0 234 0 0 0 chr21 30497028 30497054 -14410516 + (CA)n Simple_repeat Simple_repeat 2 27 0 252 194 167 28 chr21 30498346 30498454 -14409116 - L1ME4a LINE L1 -53 6068 5946 743 176 154 60 chr21 30498856 30499038 -14408532 - AluJb SINE Alu -20 292 94 23 0 0 0 chr21 30499184 30499207 -14408363 + AT_rich Low_complexity Low_complexity 1 23 0 1212 180 160 8 chr21 30499893 30500143 -14407427 + AluJo SINE Alu 2 289 -13 24 0 0 0 chr21 30500147 30500171 -14407399 + AT_rich Low_complexity Low_complexity 1 24 0 605 219 130 0 chr21 30500889 30501058 -14406512 - MER58A DNA MER1_type -33 191 1 680 158 47 0 chr21 30501675 30501802 -14405768 - AluJo SINE Alu -178 134 2 1135 189 99 30 chr21 30502543 30502908 -14404662 - MER113 DNA MER1_type? -119 402 13 281 237 79 72 chr21 30502916 30503055 -14404515 + MIR3 SINE MIR 6 145 -63 283 284 78 0 chr21 30503071 30503173 -14404397 + MER113 DNA MER1_type? 5 114 -407 1592 209 80 40 chr21 30503201 30503603 -14403967 - MER21B LTR ERV1 -427 436 19 402 216 10 20 chr21 30503672 30503774 -14403796 + MLT1A1 LTR MaLR 11 111 -254 2212 106 6 3 chr21 30504255 30504566 -14403004 - AluSx SINE Alu 0 312 1 780 169 0 0 chr21 30505154 30505278 -14402292 + FLAM_C SINE Alu 3 126 -7 26 30 0 0 chr21 30505278 30505311 -14402259 + AT_rich Low_complexity Low_complexity 1 33 0 375 298 164 16 chr21 30505698 30506003 -14401567 + L2 LINE L2 2326 2675 -639 2331 67 0 3 chr21 30506264 30506547 -14401023 + AluY SINE Alu 26 307 -4 1544 167 19 19 chr21 30506713 30506977 -14400593 + AluJo SINE Alu 5 268 -44 307 143 0 152 chr21 30507057 30507162 -14400408 + HAL1b LINE L1 748 836 -512 2120 78 0 99 chr21 30507510 30507844 -14399726 - AluSc SINE Alu -8 301 1 494 276 48 0 chr21 30509376 30509521 -14398049 - MER5A DNA MER1_type -10 179 28 546 190 60 0 chr21 30509556 30509656 -14397914 - FLAM_C SINE Alu -32 111 6 905 135 0 0 chr21 30510567 30510700 -14396870 - FLAM_A SINE Alu 0 142 10 904 228 67 8 chr21 30510926 30511180 -14396390 + ORSL DNA AcHobo 3 271 -4 1966 164 3 0 chr21 30511246 30511551 -14396019 + AluJb SINE Alu 1 306 -6 272 258 0 43 chr21 30511935 30512028 -14395542 + MLT1K LTR MaLR 483 571 -17 2243 102 18 0 chr21 30512194 30512479 -14395091 - AluSx SINE Alu -16 296 7 2040 96 71 41 chr21 30513062 30513426 -14394144 - THE1C LTR MaLR 0 375 1 630 320 108 23 chr21 30513761 30514151 -14393419 - LTR33 LTR ERVL -68 453 31 2061 127 14 0 chr21 30514548 30514839 -14392731 + AluSq SINE Alu 1 295 -18 2337 104 7 7 chr21 30514995 30515303 -14392267 - AluSx SINE Alu -4 308 1 253 223 120 29 chr21 30515639 30515814 -14391756 + HAL1 LINE L1 1106 1296 -1211 2006 135 35 3 chr21 30515817 30516106 -14391464 + AluSx SINE Alu 1 298 -14 197 132 26 0 chr21 30516119 30516157 -14391413 + A-rich Low_complexity Low_complexity 5 43 0 401 133 0 0 chr21 30516190 30516250 -14391320 + Alu SINE Alu 240 299 -3 750 283 121 23 chr21 30516286 30516682 -14390888 + HAL1 LINE L1 1244 1678 -829 2385 91 0 0 chr21 30516684 30516982 -14390588 - AluSx SINE Alu -14 298 1 1389 272 69 30 chr21 30517016 30517304 -14390266 + L1MC1 LINE L1 5327 5602 -2206 315 0 0 0 chr21 30517304 30517339 -14390231 + (CA)n Simple_repeat Simple_repeat 1 35 0 1389 272 69 30 chr21 30517339 30517586 -14389984 + L1MC1 LINE L1 5602 5883 -1925 1949 148 0 23 chr21 30517589 30517893 -14389677 + AluJb SINE Alu 1 297 -15 4739 148 18 10 chr21 30518381 30519782 -14387788 + L1PB1 LINE L1 4391 5795 -356 408 87 38 71 chr21 30519782 30519965 -14387605 + (TA)n Simple_repeat Simple_repeat 1 177 0 319 174 17 47 chr21 30519999 30520252 -14387318 + (TA)n Simple_repeat Simple_repeat 1 245 0 2415 79 41 41 chr21 30520257 30520625 -14386945 + L1PB1 LINE L1 5782 6149 -2 838 272 35 8 chr21 30520762 30521023 -14386547 + L1MC4a LINE L1 6497 6764 -1044 1458 114 35 0 chr21 30521025 30521227 -14386343 + MER30 DNA MER1_type 1 209 -21 1952 139 0 24 chr21 30521302 30521596 -14385974 - AluSx SINE Alu -25 287 1 1917 144 18 24 chr21 30521649 30521990 -14385580 + L1MC1 LINE L1 5994 6332 -1 1091 218 65 53 chr21 30521996 30522445 -14385125 + L1MC5 LINE L1 7473 7926 -35 1961 125 0 0 chr21 30522523 30522787 -14384783 - AluSx SINE Alu -18 294 31 1951 168 64 102 chr21 30522977 30523496 -14384074 + MLT1D LTR MaLR 7 505 0 863 202 42 30 chr21 30524124 30524164 -14383406 - L1ME LINE L1 -679 5483 5445 2349 100 0 3 chr21 30524164 30524473 -14383097 - AluY SINE Alu -1 310 3 863 202 42 30 chr21 30524473 30524783 -14382787 - L1ME LINE L1 -717 5445 5121 830 221 54 12 chr21 30524767 30525007 -14382563 - L1ME LINE L1 -1506 4640 4391 * 302 272 0 0 chr21 30525045 30525126 -14382444 - L1ME LINE L1 -3446 2700 2620 1926 168 9 9 chr21 30525126 30525447 -14382123 - MER50 LTR ERV1 -14 720 400 1580 124 16 8 chr21 30525447 30525689 -14381881 - MER50 LTR ERV1 -490 244 1 1937 150 38 51 chr21 30525689 30525754 -14381816 - MLT1B LTR MaLR -1 389 325 2209 119 0 0 chr21 30525754 30526070 -14381500 + AluSx SINE Alu 1 312 0 1937 150 38 51 chr21 30526070 30526398 -14381172 - MLT1B LTR MaLR -65 325 1 1073 226 59 129 chr21 30526503 30526532 -14381038 + MER21B LTR ERV1 1 30 -833 3208 151 21 53 chr21 30526532 30527153 -14380417 - MER7C DNA MER2_type -1 601 1 1073 226 59 129 chr21 30527153 30527698 -14379872 + MER21B LTR ERV1 30 535 -328 337 243 90 27 chr21 30527701 30527812 -14379758 + MER21B LTR ERV1 695 812 -51 196 42 0 0 chr21 30529388 30529412 -14378158 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1826 132 28 21 chr21 30529412 30529690 -14377880 - AluJo SINE Alu -6 306 2 751 180 117 26 chr21 30530178 30530352 -14377218 + AluJo SINE Alu 2 179 -133 225 80 68 57 chr21 30531090 30531178 -14376392 + (CATAT)n Simple_repeat Simple_repeat 2 90 0 1154 65 0 7 chr21 30531183 30531322 -14376248 - AluY SINE Alu -173 138 1 1057 163 60 0 chr21 30531361 30531576 -14375994 + MSTA LTR MaLR 103 330 -98 695 303 83 40 chr21 30532028 30532557 -14375013 - MARNA DNA Mariner -6 580 29 688 309 73 44 chr21 30532581 30533034 -14374536 - MLT1J LTR MaLR -45 466 1 2330 102 3 13 chr21 30533040 30533343 -14374227 - AluSx SINE Alu -12 300 1 278 175 21 41 chr21 30533603 30533700 -14373870 + GA-rich Low_complexity Low_complexity 1 95 0 2131 115 0 0 chr21 30534395 30534735 -14372835 + AluSc SINE Alu 1 340 0 1735 180 13 16 chr21 30535023 30535334 -14372236 - AluJo SINE Alu -2 310 1 1182 142 114 0 chr21 30536860 30537071 -14370499 - MER46A DNA MER2_type 0 236 2 1861 143 24 88 chr21 30537074 30537353 -14370217 + L1MB8 LINE L1 5786 6081 -97 2456 88 0 7 chr21 30537353 30537658 -14369912 + AluSx SINE Alu 1 303 -9 1861 143 24 88 chr21 30537658 30537670 -14369900 + L1MB8 LINE L1 6081 6092 -86 1748 129 82 18 chr21 30537670 30537950 -14369620 + AluJo SINE Alu 1 298 -14 1861 143 24 88 chr21 30537950 30538077 -14369493 + L1MB8 LINE L1 6092 6178 0 2178 123 3 16 chr21 30538151 30538468 -14369102 + AluSq SINE Alu 1 313 0 785 116 14 68 chr21 30539081 30539227 -14368343 - MSTB1 LTR MaLR -1 431 294 433 182 57 0 chr21 30539270 30539358 -14368212 - MSTB1 LTR MaLR -334 94 2 1808 103 4 4 chr21 30539510 30539752 -14367818 - AluSg SINE Alu -11 299 58 1649 108 0 0 chr21 30539753 30539967 -14367603 + AluSq SINE Alu 33 246 -67 215 196 134 82 chr21 30540501 30540598 -14366972 - MIR SINE MIR -32 230 129 2239 122 0 0 chr21 30540700 30541004 -14366566 - AluSc SINE Alu -4 305 2 2582 91 37 0 chr21 30541030 30541381 -14366189 - THE1B LTR MaLR 0 364 1 2333 111 0 0 chr21 30544244 30544542 -14363028 - AluSx SINE Alu -11 301 4 27 62 0 0 chr21 30545345 30545393 -14362177 + AT_rich Low_complexity Low_complexity 1 48 0 1727 140 89 0 chr21 30545393 30545650 -14361920 - AluJb SINE Alu -31 281 2 204 273 0 0 chr21 30546112 30546178 -14361392 + (CA)n Simple_repeat Simple_repeat 1 66 0 232 235 136 61 chr21 30547270 30547402 -14360168 - MIR SINE MIR -19 243 102 316 307 32 42 chr21 30547454 30547601 -14359969 - MIR SINE MIR -62 146 24 214 191 0 0 chr21 30547652 30547694 -14359876 + GA-rich Low_complexity Low_complexity 1 42 0 273 318 93 46 chr21 30553326 30553477 -14354093 + MIR3 SINE MIR 44 201 -7 259 210 70 112 chr21 30553699 30553750 -14353820 - MIR SINE MIR -19 243 191 2053 118 35 0 chr21 30553750 30554037 -14353533 + AluJb SINE Alu 1 297 -15 259 210 70 112 chr21 30554037 30554128 -14353442 - MIR SINE MIR -71 191 107 1608 232 88 86 chr21 30556442 30556565 -14351005 + L1MEc LINE L1 953 1074 -5322 1889 139 175 11 chr21 30556565 30556931 -14350639 + MSTA LTR MaLR 1 426 -2 1608 232 88 86 chr21 30556931 30558141 -14349429 + L1MEc LINE L1 1074 2398 -3998 2116 128 3 0 chr21 30558209 30558497 -14349073 - AluSx SINE Alu -23 289 1 1473 164 42 15 chr21 30559074 30559336 -14348234 + AluJo SINE Alu 23 291 -21 320 302 26 0 chr21 30559878 30559994 -14347576 + L1ME3A LINE L1 5824 5942 -228 207 0 0 0 chr21 30560257 30560280 -14347290 + (T)n Simple_repeat Simple_repeat 1 23 0 2240 250 50 22 chr21 30561431 30562115 -14345455 + L1ME4a LINE L1 17 719 -5821 1172 264 31 14 chr21 30562122 30562538 -14345032 + L1ME4a LINE L1 5281 5703 -837 192 97 0 0 chr21 30562566 30562597 -14344973 + (A)n Simple_repeat Simple_repeat 1 31 0 1002 131 25 40 chr21 30562627 30562855 -14344715 + L1MC/D LINE L1 5262 5487 -846 23 33 0 0 chr21 30563146 30563176 -14344394 + AT_rich Low_complexity Low_complexity 1 30 0 1541 159 131 3 chr21 30563531 30563851 -14343719 - MER46B DNA MER2_type 0 236 1 197 303 61 0 chr21 30564496 30564562 -14343008 - MIR SINE MIR -36 226 157 874 232 5 34 chr21 30564633 30564840 -14342730 - MIR SINE MIR -39 223 23 292 280 0 0 chr21 30566677 30566752 -14340818 + (CA)n Simple_repeat Simple_repeat 2 76 0 785 122 81 0 chr21 30567758 30567881 -14339689 - FLAM_C SINE Alu 0 133 1 2152 127 3 13 chr21 30569045 30569352 -14338218 - AluSx SINE Alu -8 304 1 2642 64 0 3 chr21 30569537 30569849 -14337721 - AluY SINE Alu 0 311 1 346 283 148 52 chr21 30570257 30570388 -14337182 + L1ME4a LINE L1 5805 5922 -636 2239 119 0 3 chr21 30570388 30570690 -14336880 + AluSq SINE Alu 1 301 -12 346 283 148 52 chr21 30570690 30570788 -14336782 + L1ME4a LINE L1 5922 6056 -502 243 190 0 0 chr21 30570811 30570869 -14336701 + GA-rich Low_complexity Low_complexity 1 58 0 259 340 0 0 chr21 30570895 30570995 -14336575 + L1ME4a LINE L1 6127 6226 -1976 254 280 40 56 chr21 30571646 30571771 -14335799 + MIR3 SINE MIR 78 200 -8 1223 128 0 43 chr21 30572524 30572711 -14334859 - 7SLRNA srpRNA srpRNA -1 319 141 311 127 56 70 chr21 30572758 30572829 -14334741 - AluSg/x SINE Alu -108 192 123 267 267 92 85 chr21 30572879 30573324 -14334246 + L1ME4a LINE L1 5671 6118 -3 843 215 100 48 chr21 30573342 30573725 -14333845 + L1ME2 LINE L1 5759 6164 0 465 314 60 9 chr21 30573802 30574117 -14333453 + L1MDa LINE L1 1571 1901 -4639 * 1041 192 60 57 chr21 30574116 30574449 -14333121 + L1M4 LINE L1 3621 3954 -2192 490 163 31 22 chr21 30575066 30575223 -14332347 - MER20 DNA MER1_type 0 219 4 2565 145 19 9 chr21 30575987 30576414 -14331156 + MSTB1 LTR MaLR 1 431 -1 241 203 17 0 chr21 30579241 30579300 -14328270 + L1ME4a LINE L1 6450 6509 -6 2044 95 0 86 chr21 30579871 30580198 -14327372 + AluSq SINE Alu 1 299 -14 1671 152 4 15 chr21 30580209 30580479 -14327091 + AluJb SINE Alu 1 267 -45 484 221 147 0 chr21 30581598 30581761 -14325809 + MER5A DNA MER1_type 3 189 0 603 221 100 95 chr21 30581903 30582134 -14325436 + MIR SINE MIR 28 259 -3 225 130 109 0 chr21 30583241 30583287 -14324283 + MLT1J2 LTR MaLR 10 60 -390 446 260 45 70 chr21 30583384 30583601 -14323969 + MLT1J2 LTR MaLR 238 406 -3 935 245 12 48 chr21 30584470 30584719 -14322851 + MIR SINE MIR 2 241 -21 1905 157 0 7 chr21 30585669 30585969 -14321601 - AluSx SINE Alu -14 298 1 1276 212 0 36 chr21 30586157 30586464 -14321106 + AluJb SINE Alu 1 296 -16 32 57 0 0 chr21 30587737 30587790 -14319780 + AT_rich Low_complexity Low_complexity 1 53 0 1997 133 0 3 chr21 30587804 30588105 -14319465 + AluSx SINE Alu 1 300 -12 427 289 16 0 chr21 30588228 30588349 -14319221 - MIR SINE MIR -32 230 108 183 308 86 8 chr21 30588861 30588978 -14318592 + MIR SINE MIR 13 138 -124 21 36 0 0 chr21 30589534 30589562 -14318008 + AT_rich Low_complexity Low_complexity 1 28 0 527 78 13 0 chr21 30591188 30591265 -14316305 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 354 292 88 62 chr21 30591430 30591622 -14315948 + MIR SINE MIR 46 242 -20 2109 108 0 7 chr21 30592269 30592566 -14315004 - AluSx SINE Alu -17 295 1 1494 182 25 3 chr21 30593728 30594014 -14313556 - AluJo SINE Alu -20 292 1 284 130 0 0 chr21 30594016 30594062 -14313508 - FLAM_A SINE Alu 0 133 88 213 238 48 67 chr21 30594313 30594418 -14313152 + MER5A DNA MER1_type 10 112 -77 1782 161 0 31 chr21 30595221 30595543 -14312027 + AluJo SINE Alu 1 312 0 402 278 21 62 chr21 30597196 30597340 -14310230 - MIR SINE MIR -79 183 46 2161 90 3 3 chr21 30598137 30598426 -14309144 - AluSx SINE Alu -23 289 1 1732 133 3 68 chr21 30599120 30599429 -14308141 + AluSx SINE Alu 1 289 -23 986 146 32 0 chr21 30599523 30599681 -14307889 - FRAM SINE Alu -12 164 2 614 182 0 0 chr21 30599952 30600062 -14307508 + FRAM SINE Alu 65 174 -2 399 294 222 0 chr21 30600556 30600736 -14306834 - MIR SINE MIR -7 255 36 570 238 143 16 chr21 30600740 30600929 -14306641 + MER58A DNA MER1_type 12 224 0 686 281 151 18 chr21 30600950 30601235 -14306335 - L2 LINE L2 -20 3293 2971 416 272 110 0 chr21 30602096 30602232 -14305338 + MIR SINE MIR 32 182 -80 188 35 35 0 chr21 30603297 30603326 -14304244 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr21 30603487 30603509 -14304061 + AT_rich Low_complexity Low_complexity 1 22 0 764 281 113 17 chr21 30603916 30604375 -14303195 - L1ME4a LINE L1 -2 6119 5617 244 297 55 44 chr21 30604375 30604489 -14303081 + MER5A DNA MER1_type 68 176 -2 265 335 65 41 chr21 30604504 30604696 -14302874 - L1ME4a LINE L1 -509 5612 5411 1097 188 48 0 chr21 30604696 30604903 -14302667 - MER20 DNA MER1_type -1 218 2 265 335 65 41 chr21 30604903 30604955 -14302615 - L1ME4a LINE L1 -710 5411 5362 1562 180 0 38 chr21 30605721 30606061 -14301509 + AluJo SINE Alu 1 312 0 358 279 164 32 chr21 30606457 30606700 -14300870 - L1ME4a LINE L1 -13 6108 5898 1607 174 14 7 chr21 30606700 30606870 -14300700 - AluJb SINE Alu -16 296 122 243 0 0 0 chr21 30606870 30606897 -14300673 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1607 174 14 7 chr21 30606897 30607020 -14300550 - AluJb SINE Alu -190 122 1 358 279 164 32 chr21 30607020 30607210 -14300360 - L1ME4a LINE L1 -223 5898 5618 700 260 52 31 chr21 30609619 30609766 -14297804 - MIR SINE MIR -9 253 100 2046 101 39 0 chr21 30609766 30610052 -14297518 + AluSx SINE Alu 1 297 -15 700 260 52 31 chr21 30610052 30610096 -14297474 - MIR SINE MIR -162 100 58 709 178 109 78 chr21 30611563 30611884 -14295686 + L1MC5 LINE L1 7473 7803 -158 412 260 16 24 chr21 30614008 30614135 -14293435 - L2 LINE L2 -20 3293 3168 2455 74 0 0 chr21 30614758 30615096 -14292474 + AluY SINE Alu 1 338 0 1413 224 23 40 chr21 30615876 30615928 -14291642 + MLT1B LTR MaLR 1 52 -338 2243 107 10 0 chr21 30615928 30616237 -14291333 + AluSx SINE Alu 1 312 0 1413 224 23 40 chr21 30616237 30616581 -14290989 + MLT1B LTR MaLR 52 390 0 183 269 58 0 chr21 30616704 30616756 -14290814 + MIR SINE MIR 117 171 -91 612 236 84 68 chr21 30616774 30616965 -14290605 - MIR SINE MIR -48 214 21 836 103 0 0 chr21 30617384 30617500 -14290070 + AluSc SINE Alu 188 303 -6 277 293 273 24 chr21 30617848 30618097 -14289473 - L3 LINE CR1 -258 1319 1009 623 317 27 9 chr21 30618190 30618411 -14289159 + MIR SINE MIR 20 244 -18 184 281 31 31 chr21 30618539 30618603 -14288967 - L2 LINE L2 -3 3269 3206 611 314 127 40 chr21 30618916 30619655 -14287915 - L2 LINE L2 -1 3312 2515 207 303 177 65 chr21 30619802 30620079 -14287491 - L3 LINE CR1 -892 685 378 2112 31 12 0 chr21 30620415 30620693 -14286877 - L1P LINE L1 -730 5421 5142 6455 25 3 1 chr21 30620693 30621438 -14286132 + L1PA4 LINE L1 5408 6155 0 279 271 67 134 chr21 30621444 30621713 -14285857 + L2 LINE L2 3022 3272 0 1640 170 0 42 chr21 30621789 30622095 -14285475 + AluJo SINE Alu 1 293 -19 241 321 0 29 chr21 30623064 30623201 -14284369 + G-rich Low_complexity Low_complexity 5 137 0 280 220 242 0 chr21 30624532 30624623 -14282947 + MIR SINE MIR 18 130 -78 288 272 37 12 chr21 30624635 30624716 -14282854 - MIR SINE MIR -148 114 32 219 242 97 0 chr21 30625001 30625063 -14282507 + L2 LINE L2 2925 2992 -321 712 147 32 51 chr21 30625120 30625277 -14282293 - MLT1A1 LTR MaLR -211 154 1 693 274 173 51 chr21 30625292 30626020 -14281550 + L1M4 LINE L1 3529 4167 -1979 1391 174 64 24 chr21 30626020 30626318 -14281252 + AluJo SINE Alu 1 310 -2 693 274 173 51 chr21 30626318 30626707 -14280863 + L1M4 LINE L1 4167 4803 -1343 2059 95 3 7 chr21 30626707 30627041 -14280529 + AluSc SINE Alu 1 333 0 693 274 173 51 chr21 30627041 30627080 -14280490 + L1M4 LINE L1 4803 4836 -1310 4045 196 74 112 chr21 30627084 30627478 -14280092 + L1MC3 LINE L1 6367 6775 -1010 2026 146 0 3 chr21 30627478 30627787 -14279783 + AluSx SINE Alu 5 312 0 4045 196 74 112 chr21 30627787 30628095 -14279475 + L1MC3 LINE L1 6775 7093 -692 770 167 0 24 chr21 30628095 30628221 -14279349 + AluJo SINE Alu 3 125 -177 4045 196 74 112 chr21 30628221 30628318 -14279252 + L1MC3 LINE L1 7093 7192 -593 314 182 50 111 chr21 30628318 30628417 -14279153 + MLT1F1 LTR MaLR 35 127 -440 4045 196 74 112 chr21 30628417 30628982 -14278588 + L1MC3 LINE L1 7192 7775 -10 2068 145 0 0 chr21 30628987 30629332 -14278238 + AluSx SINE Alu 1 345 0 614 179 125 0 chr21 30629341 30629382 -14278188 - L1MB1 LINE L1 -141 6039 6004 375 169 0 13 chr21 30629382 30629459 -14278111 - L1MA10 LINE L1 -2 6332 6257 614 179 125 0 chr21 30629459 30629570 -14278000 - L1MB1 LINE L1 -176 6004 5869 1177 170 4 22 chr21 30629571 30629800 -14277770 + L1MB1 LINE L1 5646 5870 -319 379 204 88 26 chr21 30629852 30629965 -14277605 + MLT1H LTR MaLR 1 120 -429 2049 178 80 8 chr21 30630419 30630806 -14276764 + MSTA LTR MaLR 14 428 0 337 274 242 0 chr21 30630836 30630993 -14276577 - L2 LINE L2 -340 2974 2780 666 233 60 112 chr21 30631019 30631181 -14276389 + MER119 DNA MER1_type 3 149 -434 2181 107 3 10 chr21 30631181 30631480 -14276090 + AluSx SINE Alu 1 297 -15 666 233 60 112 chr21 30631480 30631566 -14276004 + MER119 DNA MER1_type 149 238 -345 1047 171 11 0 chr21 30631566 30631742 -14275828 + AluJo SINE Alu 133 310 -2 1150 226 38 18 chr21 30631743 30631888 -14275682 + MER119 DNA MER1_type 236 377 -206 1937 127 47 7 chr21 30631888 30632187 -14275383 + AluSx SINE Alu 1 311 -1 1150 226 38 18 chr21 30632187 30632382 -14275188 + MER119 DNA MER1_type 377 583 0 240 35 0 0 chr21 30632442 30632471 -14275099 + (T)n Simple_repeat Simple_repeat 1 29 0 2851 123 50 15 chr21 30632521 30632785 -14274785 + L1MB3 LINE L1 5684 5974 -209 2410 97 3 0 chr21 30632785 30633095 -14274475 + AluSp SINE Alu 1 311 -2 2851 123 50 15 chr21 30633095 30633310 -14274260 + L1MB3 LINE L1 5974 6180 -3 2349 123 32 37 chr21 30633652 30634011 -14273559 + L1MB3 LINE L1 5775 6133 -50 2158 125 3 0 chr21 30634011 30634306 -14273264 + AluSx SINE Alu 1 296 -16 2349 123 32 37 chr21 30634306 30634354 -14273216 + L1MB3 LINE L1 6133 6180 -3 285 198 0 0 chr21 30634354 30634435 -14273135 + (TA)n Simple_repeat Simple_repeat 1 81 0 270 0 0 0 chr21 30634485 30634515 -14273055 + (TG)n Simple_repeat Simple_repeat 1 30 0 241 103 0 0 chr21 30634806 30634845 -14272725 - MER1A DNA MER1_type 0 533 495 1960 134 48 0 chr21 30634855 30635145 -14272425 - AluSx SINE Alu -3 309 6 2654 113 22 5 chr21 30635152 30635558 -14272012 - MER1A DNA MER1_type -27 502 90 1985 142 0 31 chr21 30635672 30635990 -14271580 + AluJb SINE Alu 3 310 -2 2405 119 0 0 chr21 30636117 30636429 -14271141 - AluSx SINE Alu 0 312 1 1892 135 7 30 chr21 30636959 30637262 -14270308 - AluSx SINE Alu -16 296 1 317 318 99 13 chr21 30637481 30637632 -14269938 - MIR3 SINE MIR -5 203 40 2316 103 3 0 chr21 30637746 30638047 -14269523 + AluSg SINE Alu 1 302 -8 1895 129 0 72 chr21 30638419 30638737 -14268833 + AluSx SINE Alu 1 295 -17 212 158 0 26 chr21 30639085 30639123 -14268447 + MIR SINE MIR 111 147 -115 738 196 38 12 chr21 30639136 30639304 -14268266 + MER45A DNA AcHobo 3 175 -3 242 86 0 0 chr21 30639308 30639343 -14268227 + MIR SINE MIR 153 187 -75 2162 109 3 7 chr21 30639976 30640270 -14267300 - AluSx SINE Alu -19 293 1 512 214 71 29 chr21 30640270 30640410 -14267160 - L1M3 LINE L1 -395 5785 5640 450 332 141 11 chr21 30640427 30640710 -14266860 + L2 LINE L2 2658 2977 -337 470 167 115 0 chr21 30640925 30641021 -14266549 - L1M3 LINE L1 -412 5768 5662 190 271 73 62 chr21 30641129 30641225 -14266345 + L2 LINE L2 3175 3271 -1 238 242 108 25 chr21 30642129 30642249 -14265321 + MIR SINE MIR 20 149 -113 23 0 0 0 chr21 30642350 30642373 -14265197 + GC_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr21 30646264 30646286 -14261284 + (TG)n Simple_repeat Simple_repeat 1 22 0 2417 103 3 0 chr21 30646348 30646686 -14260884 - AluSq SINE Alu 0 339 1 880 224 24 0 chr21 30647018 30647188 -14260382 - FAM SINE Alu -1 174 1 2185 174 8 0 chr21 30647256 30647636 -14259934 - MLT1B LTR MaLR 0 390 8 631 261 17 34 chr21 30647827 30648003 -14259567 - MER5B DNA MER1_type 0 178 6 461 266 89 13 chr21 30648589 30648747 -14258823 - MIR SINE MIR -63 199 30 361 206 140 44 chr21 30648943 30649079 -14258491 + Charlie7 DNA MER1_type 9 157 -2455 233 238 71 0 chr21 30649055 30649139 -14258431 + Charlie7 DNA MER1_type 2481 2570 -42 * 308 136 0 0 chr21 30649186 30649245 -14258325 - L1PA14 LINE L1 -1 6160 6102 2160 107 0 0 chr21 30649490 30649762 -14257808 + AluSx SINE Alu 1 272 -40 250 24 71 0 chr21 30649777 30649819 -14257751 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1585 117 5 0 chr21 30650231 30650445 -14257125 + AluSg/x SINE Alu 86 300 -12 1935 141 0 29 chr21 30650445 30650751 -14256819 - AluJb SINE Alu -15 297 1 450 221 97 41 chr21 30650760 30650905 -14256665 - MIR SINE MIR -13 249 97 1633 291 109 33 chr21 30651144 30651821 -14255749 + L1MEd LINE L1 39 663 -5647 2293 110 0 3 chr21 30651821 30652121 -14255449 + AluSx SINE Alu 3 301 -11 1633 291 109 33 chr21 30652121 30652810 -14254760 + L1MEd LINE L1 663 1560 -4750 2342 109 13 0 chr21 30652850 30653154 -14254416 + AluSx SINE Alu 1 308 -4 268 24 24 24 chr21 30654888 30654930 -14252640 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1546 148 49 67 chr21 30654935 30655090 -14252480 - AluJo SINE Alu -33 279 130 2257 106 0 10 chr21 30655090 30655208 -14252362 + AluSx SINE Alu 5 123 -189 198 0 0 0 chr21 30655208 30655230 -14252340 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2257 106 0 10 chr21 30655230 30655413 -14252157 + AluSx SINE Alu 123 303 -9 1546 148 49 67 chr21 30655413 30655541 -14252029 - AluJo SINE Alu -182 130 1 716 197 176 11 chr21 30655766 30655954 -14251616 + MER20 DNA MER1_type 1 219 0 200 268 14 14 chr21 30656499 30656570 -14251000 + CT-rich Low_complexity Low_complexity 2 72 0 2360 102 0 0 chr21 30657490 30657785 -14249785 + AluSc SINE Alu 1 295 -14 840 156 0 15 chr21 30657793 30657928 -14249642 + FLAM_C SINE Alu 1 133 0 1815 112 3 69 chr21 30659063 30659398 -14248172 - AluSx SINE Alu 0 315 1 2150 146 0 0 chr21 30659403 30659711 -14247859 - AluSq SINE Alu -5 308 1 22 0 0 0 chr21 30659715 30659737 -14247833 + AT_rich Low_complexity Low_complexity 1 22 0 1457 178 28 19 chr21 30659779 30660100 -14247470 - MER33 DNA MER1_type 0 324 1 2533 106 16 27 chr21 30660536 30660748 -14246822 - THE1B LTR MaLR 0 364 156 2123 130 0 0 chr21 30660748 30661041 -14246529 + AluSx SINE Alu 1 293 -19 2533 106 16 27 chr21 30661041 30661196 -14246374 - THE1B LTR MaLR -208 156 1 281 285 25 58 chr21 30661236 30661393 -14246177 - MIR SINE MIR -62 146 8 441 275 34 52 chr21 30661500 30661673 -14245897 - MER5B DNA MER1_type -16 165 1 26 50 0 0 chr21 30661684 30661724 -14245846 + AT_rich Low_complexity Low_complexity 1 40 0 2301 224 120 2 chr21 30661724 30662326 -14245244 - L1MC4 LINE L1 -17 8025 7353 1939 140 0 36 chr21 30662777 30663085 -14244485 - AluJo SINE Alu -11 301 5 1021 230 84 80 chr21 30663757 30663934 -14243636 + MLT1C LTR MaLR 1 176 -291 834 127 8 30 chr21 30663934 30664068 -14243502 + AluJo/FLAM SINE Alu 1 131 -171 2166 115 3 7 chr21 30664070 30664365 -14243205 + AluSx SINE Alu 1 294 -18 2534 42 0 0 chr21 30664367 30664690 -14242880 + AluY SINE Alu 1 323 0 1021 230 84 80 chr21 30664690 30664970 -14242600 + MLT1C LTR MaLR 176 467 0 370 218 24 121 chr21 30664970 30665135 -14242435 - MIR SINE MIR -40 222 74 730 179 0 50 chr21 30665270 30665410 -14242160 - FLAM_A SINE Alu 0 133 1 3977 208 57 36 chr21 30665729 30666097 -14241473 - MER45B DNA AcHobo -541 1040 681 2212 112 0 0 chr21 30666097 30666419 -14241151 - AluSg SINE Alu 0 322 1 3977 208 57 36 chr21 30666419 30666935 -14240635 - MER45B DNA AcHobo -900 681 128 2150 110 0 0 chr21 30666935 30667240 -14240330 + AluSx SINE Alu 1 305 0 3977 208 57 36 chr21 30667240 30667360 -14240210 - MER45B DNA AcHobo -1453 128 12 2375 97 33 0 chr21 30668272 30668572 -14238998 + AluSx SINE Alu 1 310 -2 749 261 58 13 chr21 30668573 30668799 -14238771 + MER82 DNA MER2_type 418 653 0 2197 105 0 14 chr21 30669011 30669306 -14238264 + AluSx SINE Alu 1 291 -21 2256 112 0 3 chr21 30670876 30671171 -14236399 + AluSp SINE Alu 1 294 -19 852 278 185 12 chr21 30671198 30671666 -14235904 - L2 LINE L2 -32 3281 2718 676 226 49 84 chr21 30671902 30672189 -14235381 - MLT1J2 LTR MaLR -132 318 42 21 0 0 0 chr21 30672717 30672738 -14234832 + AT_rich Low_complexity Low_complexity 1 21 0 505 102 0 23 chr21 30673021 30673109 -14234461 + (GGGA)n Simple_repeat Simple_repeat 2 87 0 2067 114 30 10 chr21 30673318 30673617 -14233953 + AluSq SINE Alu 1 305 -8 1879 175 6 9 chr21 30673771 30674102 -14233468 - MER21B-int LTR ERV1 -3861 330 1 351 0 0 0 chr21 30674111 30674150 -14233420 + (CA)n Simple_repeat Simple_repeat 2 40 0 4170 189 48 11 chr21 30674154 30674973 -14232597 - MER21B LTR ERV1 -14 849 1 2048 148 83 55 chr21 30675039 30675630 -14231940 - MER4A LTR ERV1 0 465 1 2218 82 35 0 chr21 30676019 30676301 -14231269 + AluSx SINE Alu 1 292 -20 384 311 138 13 chr21 30676821 30677126 -14230444 + L2 LINE L2 725 1067 -2247 1611 119 123 0 chr21 30677175 30677426 -14230144 + AluSx SINE Alu 1 282 -30 634 96 17 61 chr21 30677604 30677719 -14229851 - MLT1D LTR MaLR -395 110 1 311 311 24 30 chr21 30677733 30677753 -14229817 + L2 LINE L2 1802 1821 -1493 2276 120 3 0 chr21 30677753 30678062 -14229508 - AluSp SINE Alu -3 310 1 311 311 24 30 chr21 30678062 30678205 -14229365 + L2 LINE L2 1821 1964 -1350 315 205 83 70 chr21 30678442 30678598 -14228972 - L1ME3A LINE L1 -44 6126 5969 254 151 0 0 chr21 30678627 30678680 -14228890 - L1MC1 LINE L1 -1 6332 6280 2058 131 47 7 chr21 30678684 30679126 -14228444 + AluSg SINE Alu 1 454 0 2768 159 6 31 chr21 30679126 30679648 -14227922 - L1MC1 LINE L1 -42 6291 5783 2208 128 0 3 chr21 30679667 30679980 -14227590 - AluSx SINE Alu 0 312 1 241 278 148 17 chr21 30680308 30680423 -14227147 - MLT1J LTR MaLR -50 461 332 1371 203 119 11 chr21 30681604 30682009 -14225561 - MLT1C LTR MaLR -18 608 1 4173 167 28 40 chr21 30682371 30683166 -14224404 - LTR1 LTR ERV1 0 785 1 2473 82 0 0 chr21 30684006 30684299 -14223271 + AluSg SINE Alu 1 293 -17 1170 212 28 105 chr21 30685077 30685362 -14222208 - MSTD LTR MaLR 0 396 153 197 33 33 0 chr21 30685362 30685392 -14222178 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1170 212 28 105 chr21 30685392 30685535 -14222035 - MSTD LTR MaLR -243 153 1 2401 104 3 0 chr21 30685940 30686249 -14221321 - AluSq SINE Alu -3 310 1 255 133 0 0 chr21 30687924 30687969 -14219601 + (GA)n Simple_repeat Simple_repeat 2 46 0 2293 107 7 0 chr21 30688540 30688838 -14218732 - AluSp SINE Alu -13 300 1 272 314 0 0 chr21 30689194 30689312 -14218258 + (CA)n Simple_repeat Simple_repeat 1 118 0 2370 80 13 0 chr21 30689617 30689917 -14217653 + AluSp SINE Alu 1 304 -9 237 255 20 10 chr21 30689929 30690027 -14217543 + L1MC4 LINE L1 7941 8039 -3 537 311 86 54 chr21 30690252 30690603 -14216967 + L2 LINE L2 2916 3277 -36 210 307 93 0 chr21 30690598 30690673 -14216897 - L2 LINE L2 0 3272 3191 * 2217 118 3 0 chr21 30690814 30691103 -14216467 - AluSx SINE Alu -22 290 1 187 333 26 0 chr21 30691104 30691182 -14216388 - L2 LINE L2 -188 3084 3005 431 203 182 28 chr21 30691632 30691775 -14215795 - MER63A DNA MER1_type -2 208 44 246 290 117 47 chr21 30691908 30692122 -14215448 + MIR SINE MIR 34 262 0 1481 201 3 30 chr21 30692177 30692481 -14215089 + AluJo SINE Alu 17 312 0 321 197 0 0 chr21 30692488 30692549 -14215021 + MER97b DNA MER1_type? 115 175 -878 3595 119 0 6 chr21 30692599 30693113 -14214457 + MER9 LTR ERVK 1 511 0 596 75 0 12 chr21 30693178 30693258 -14214312 + MADE1 DNA Mariner 2 80 0 24 53 0 0 chr21 30693819 30693857 -14213713 + AT_rich Low_complexity Low_complexity 1 38 0 2199 122 0 3 chr21 30694597 30694892 -14212678 + AluSx SINE Alu 1 294 -18 631 249 36 51 chr21 30695036 30695289 -14212281 + MER112 DNA MER1_type 6 254 -6 1477 81 0 0 chr21 30695681 30695855 -14211715 - AluSq SINE Alu -139 174 1 934 261 35 3 chr21 30695871 30696158 -14211412 - L1MB7 LINE L1 -2 6182 5887 2531 64 3 0 chr21 30696196 30696494 -14211076 + AluY SINE Alu 1 299 -12 897 107 0 50 chr21 30696882 30697022 -14210548 - FLAM_C SINE Alu 0 133 1 880 200 14 57 chr21 30697030 30697240 -14210330 + AluJo SINE Alu 112 312 0 391 73 0 0 chr21 30697923 30697978 -14209592 - MLT2A1 LTR ERVL 0 444 390 308 175 0 0 chr21 30698028 30698085 -14209485 + MLT2A1 LTR ERVL 348 404 -40 2196 91 3 14 chr21 30698147 30698476 -14209094 + AluSg SINE Alu 1 326 0 2835 74 28 5 chr21 30698554 30698948 -14208622 - MLT2A1 LTR ERVL -41 403 1 726 262 103 73 chr21 30699117 30699514 -14208056 - L2 LINE L2 -1 3312 2904 2160 165 41 29 chr21 30699604 30700046 -14207524 - MLT2C2 LTR ERVL -17 447 1 2413 97 0 0 chr21 30700807 30701117 -14206453 - AluSx SINE Alu -2 310 1 2461 94 3 0 chr21 30701375 30701684 -14205886 - AluSx SINE Alu -2 310 1 2315 104 0 0 chr21 30701688 30701986 -14205584 - AluY SINE Alu -13 298 1 2216 105 0 3 chr21 30702205 30702518 -14205052 - AluSx SINE Alu 0 312 1 984 176 0 12 chr21 30702547 30702712 -14204858 + FRAM SINE Alu 2 164 -2 339 138 108 0 chr21 30703768 30703833 -14203737 - AluJ/FRAM SINE Alu -14 288 217 1456 149 58 17 chr21 30704031 30704272 -14203298 - AluJo SINE Alu -61 251 1 451 310 149 38 chr21 30704369 30704766 -14202804 + L2 LINE L2 2873 3313 0 377 281 152 23 chr21 30704833 30705004 -14202566 - Charlie8 DNA MER1_type -2224 193 1 261 0 0 0 chr21 30705399 30705428 -14202142 + (CAT)n Simple_repeat Simple_repeat 2 30 0 443 339 49 62 chr21 30705608 30705933 -14201637 - L1ME4a LINE L1 -225 5896 5576 459 0 0 0 chr21 30705938 30705989 -14201581 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 293 329 47 15 chr21 30705994 30706268 -14201302 - L1ME4a LINE L1 -2271 5537 5255 216 0 0 0 chr21 30706316 30706340 -14201230 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2175 99 3 0 chr21 30706418 30706722 -14200848 + AluSp SINE Alu 1 305 0 312 319 15 0 chr21 30707287 30707422 -14200148 - MLT1F-int LTR MaLR -1233 138 2 888 235 159 26 chr21 30707436 30707738 -14199832 - MLT1F LTR MaLR -23 519 178 247 50 0 174 chr21 30707791 30707952 -14199618 + (TCCCC)n Simple_repeat Simple_repeat 1 133 0 351 344 0 8 chr21 30708036 30708162 -14199408 - MLT1F LTR MaLR -406 136 12 756 134 0 0 chr21 30708162 30708274 -14199296 + MLT1B LTR MaLR 1 112 -278 2286 86 0 7 chr21 30708289 30708579 -14198991 - AluSx SINE Alu -24 288 1 2224 103 0 7 chr21 30709197 30709479 -14198091 + AluSx SINE Alu 1 280 -32 1139 133 0 23 chr21 30709733 30709906 -14197664 + AluJo SINE Alu 7 175 -137 458 308 53 12 chr21 30709988 30710235 -14197335 + L1ME4a LINE L1 5517 5773 -348 853 156 0 0 chr21 30710247 30710375 -14197195 + AluJo SINE Alu 171 298 -14 1217 139 0 113 chr21 30710502 30710732 -14196838 + AluJb SINE Alu 85 288 -24 2300 110 7 0 chr21 30710740 30711048 -14196522 + AluSq SINE Alu 2 311 -2 348 320 96 6 chr21 30711081 30711237 -14196333 + L1ME4a LINE L1 5952 6121 0 240 238 90 103 chr21 30712792 30712914 -14194656 + LTR33 LTR ERVL 244 363 -158 2045 141 10 10 chr21 30712914 30713218 -14194352 - AluJo SINE Alu -8 304 1 240 238 90 103 chr21 30713218 30713318 -14194252 + LTR33 LTR ERVL 363 463 -58 266 200 0 0 chr21 30713808 30713858 -14193712 - L2 LINE L2 0 3313 3264 311 109 0 0 chr21 30713919 30713965 -14193605 - 5S rRNA rRNA -75 46 1 333 0 0 0 chr21 30714022 30714059 -14193511 + (TG)n Simple_repeat Simple_repeat 2 38 0 2282 104 0 3 chr21 30714320 30714619 -14192951 + AluSx SINE Alu 1 298 -14 1931 103 78 4 chr21 30715251 30715522 -14192048 - AluSx SINE Alu -21 291 1 190 339 37 18 chr21 30715772 30715881 -14191689 + MIR SINE MIR 10 120 -142 568 179 127 64 chr21 30715883 30716056 -14191514 - MLT1J2 LTR MaLR 0 450 267 2367 105 0 3 chr21 30716179 30716484 -14191086 - AluSq SINE Alu -9 304 1 275 218 35 35 chr21 30717004 30717091 -14190479 + MER21B LTR ERV1 1 87 -776 1625 207 75 80 chr21 30717262 30717504 -14190066 + MER21B LTR ERV1 148 390 -473 1986 131 28 3 chr21 30717504 30717794 -14189776 + AluSx SINE Alu 1 297 -15 1625 207 75 80 chr21 30717794 30718111 -14189459 + MER21B LTR ERV1 390 704 -159 735 168 13 0 chr21 30718156 30718305 -14189265 + L1 LINE L1 5219 5369 -777 5055 152 20 21 chr21 30718353 30718647 -14188923 - L1M2 LINE L1 -650 5662 5369 2419 84 3 0 chr21 30718647 30718944 -14188626 - AluSx SINE Alu -14 298 1 5055 152 20 21 chr21 30718944 30719924 -14187646 - L1M2 LINE L1 -943 5369 4381 1868 105 0 8 chr21 30719924 30720163 -14187407 - AluSx SINE Alu -75 237 1 1917 114 17 0 chr21 30720163 30720462 -14187108 - L1MB2 LINE L1 -38 6133 5830 913 121 7 4 chr21 30720604 30720756 -14186814 - L1P5 LINE L1 -330 5821 5674 2324 83 23 0 chr21 30721466 30721766 -14185804 + AluSx SINE Alu 1 307 -5 397 95 16 16 chr21 30722088 30722151 -14185419 - MER45A DNA AcHobo -17 161 99 190 373 36 9 chr21 30722782 30722892 -14184678 + L2 LINE L2 2354 2466 -848 225 250 162 0 chr21 30722954 30723022 -14184548 + MIR SINE MIR 63 141 -121 207 269 194 0 chr21 30723093 30723160 -14184410 - L2 LINE L2 -19 3253 3174 2204 110 0 0 chr21 30723830 30724159 -14183411 - AluSx SINE Alu 0 329 1 202 347 0 28 chr21 30724164 30724236 -14183334 + L2 LINE L2 3234 3303 -10 428 284 119 11 chr21 30724296 30724472 -14183098 - L2 LINE L2 0 3313 3119 487 106 11 53 chr21 30724507 30724560 -14183010 - MER45A DNA AcHobo -1430 151 102 2287 105 3 0 chr21 30724560 30724856 -14182714 + AluSx SINE Alu 1 297 -15 487 106 11 53 chr21 30724856 30724896 -14182674 - MER45A DNA AcHobo -1479 102 62 2089 134 10 35 chr21 30726034 30726428 -14181142 - L1MB8 LINE L1 -6 6172 5789 21 36 0 0 chr21 30727510 30727538 -14180032 + AT_rich Low_complexity Low_complexity 1 28 0 1960 113 66 63 chr21 30727711 30728074 -14179496 - THE1B LTR MaLR 0 364 1 338 284 142 63 chr21 30728147 30728224 -14179346 - L2 LINE L2 -2 3311 3242 2130 106 31 3 chr21 30728224 30728517 -14179053 + AluSq SINE Alu 1 301 -12 338 284 142 63 chr21 30728517 30728678 -14178892 - L2 LINE L2 -71 3242 3054 1622 119 181 11 chr21 30730250 30730510 -14177060 - AluSg1 SINE Alu -5 304 1 1360 200 33 67 chr21 30730515 30730877 -14176693 - L1MB8 LINE L1 -4 6174 5826 2002 142 3 7 chr21 30730877 30731172 -14176398 - AluSx SINE Alu -18 294 1 1360 200 33 67 chr21 30731172 30731229 -14176341 - L1MB8 LINE L1 -352 5826 5769 960 126 11 6 chr21 30731986 30732161 -14175409 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 2284 92 20 0 chr21 30732163 30732458 -14175112 - AluSq SINE Alu -12 301 1 854 139 0 0 chr21 30732867 30732989 -14174581 - FLAM_C SINE Alu -21 122 1 2326 107 0 3 chr21 30733323 30733633 -14173937 + AluSq SINE Alu 1 309 -4 2846 83 3 0 chr21 30734872 30735233 -14172337 - THE1B LTR MaLR 0 364 3 958 234 30 54 chr21 30735620 30735915 -14171655 - MLT1A2 LTR MaLR 0 374 87 305 324 65 7 chr21 30735937 30736076 -14171494 - MIR SINE MIR -73 189 43 339 384 28 9 chr21 30736156 30736367 -14171203 + L2 LINE L2 3099 3313 0 672 242 1 0 chr21 30737412 30738113 -14169457 + (TG)n Simple_repeat Simple_repeat 1 702 0 190 258 61 45 chr21 30739224 30739290 -14168280 + MIR3 SINE MIR 137 203 -5 549 314 118 45 chr21 30739603 30740072 -14167498 - L2 LINE L2 -1 3271 2770 287 97 194 48 chr21 30740073 30740103 -14167467 + MADE1 DNA Mariner 10 34 -46 2130 103 0 26 chr21 30740103 30740414 -14167156 - AluSx SINE Alu -9 303 1 287 97 194 48 chr21 30740414 30740445 -14167125 + MADE1 DNA Mariner 34 80 0 560 219 8 17 chr21 30740547 30740666 -14166904 + MER58B DNA MER1_type 210 327 -14 1535 189 0 18 chr21 30740814 30741099 -14166471 + AluJo SINE Alu 3 282 -30 2214 84 6 19 chr21 30741198 30741509 -14166061 + AluSx SINE Alu 6 312 0 628 267 120 65 chr21 30741556 30742047 -14165523 + L1ME LINE L1 5297 5814 -348 276 260 47 0 chr21 30743048 30743217 -14164353 + (TAA)n Simple_repeat Simple_repeat 3 179 0 2239 78 3 13 chr21 30743119 30743538 -14164032 - AluY SINE Alu 0 416 1 1590 177 53 13 chr21 30743600 30743899 -14163671 - AluJb SINE Alu 0 312 2 1894 149 17 48 chr21 30743920 30744275 -14163295 - MER2 DNA MER2_type 0 344 1 1172 161 39 17 chr21 30744405 30744635 -14162935 - MIR SINE MIR 0 262 28 593 191 66 0 chr21 30745500 30745636 -14161934 - MIR SINE MIR 0 262 118 1106 156 37 67 chr21 30745726 30745761 -14161809 - MER58B DNA MER1_type -2083 337 302 2066 105 7 7 chr21 30745761 30746055 -14161515 + AluSx SINE Alu 1 294 -18 1106 156 37 67 chr21 30746055 30746288 -14161282 - MER58B DNA MER1_type -2118 302 77 387 155 0 42 chr21 30746285 30746356 -14161214 + FLAM SINE Alu 63 130 -3 * 346 203 0 14 chr21 30746376 30746445 -14161125 - MER58B DNA MER1_type -249 92 25 413 149 0 15 chr21 30746466 30746533 -14161037 + MER58B DNA MER1_type 276 341 0 229 214 22 90 chr21 30746916 30747005 -14160565 - MIR SINE MIR -109 153 71 2551 162 46 7 chr21 30747197 30747655 -14159915 - L1MB5 LINE L1 -10 6164 5689 3141 109 43 39 chr21 30747974 30748111 -14159459 - MER75 DNA T2_type 0 514 379 2485 61 0 3 chr21 30748111 30748422 -14159148 + AluY SINE Alu 1 310 -1 3141 109 43 39 chr21 30748422 30748796 -14158774 - MER75 DNA T2_type -135 379 1 1971 128 7 3 chr21 30748831 30749127 -14158443 - AluSx SINE Alu -15 297 1 489 17 0 0 chr21 30749514 30749572 -14157998 + (CA)n Simple_repeat Simple_repeat 2 59 0 319 220 180 10 chr21 30750234 30750334 -14157236 + LTR16A1 LTR ERVL 10 126 -331 * 336 227 0 27 chr21 30750333 30750408 -14157162 + LTR16A1 LTR ERVL 355 427 -30 483 134 92 59 chr21 30750943 30751062 -14156508 + MIR SINE MIR 59 181 -81 905 139 172 11 chr21 30751778 30751958 -14155612 - MER3 DNA MER1_type 0 209 1 1882 128 14 0 chr21 30752706 30752995 -14154575 + AluSx SINE Alu 1 293 -19 2171 105 0 13 chr21 30753006 30753311 -14154259 + AluSq SINE Alu 1 301 -12 2112 125 0 0 chr21 30754971 30755268 -14152302 + AluSg SINE Alu 1 297 -13 249 221 164 29 chr21 30756163 30756303 -14151267 + LTR33 LTR ERVL 1 159 -362 2160 99 0 0 chr21 30756371 30756665 -14150905 - AluSc SINE Alu -15 294 1 2040 133 3 0 chr21 30757091 30757400 -14150170 + AluSx SINE Alu 3 312 0 7360 99 8 3 chr21 30757420 30758464 -14149106 + L1MA1 LINE L1 5254 6302 0 1996 130 7 3 chr21 30758468 30758767 -14148803 + AluSx SINE Alu 1 300 -12 1460 112 14 5 chr21 30758767 30758990 -14148580 + L1PB2 LINE L1 5927 6151 0 670 80 35 53 chr21 30759020 30759133 -14148437 + AluSg/x SINE Alu 199 309 -1 1625 230 81 7 chr21 30759406 30759836 -14147734 + MLT1C LTR MaLR 6 467 0 189 167 28 0 chr21 30759969 30760005 -14147565 - L2 LINE L2 -24 3248 3212 1382 207 155 19 chr21 30760017 30760384 -14147186 + MER63B DNA MER1_type 9 425 -11 234 242 32 6 chr21 30760714 30760871 -14146699 + (CA)n Simple_repeat Simple_repeat 1 161 0 2348 104 48 20 chr21 30760874 30761228 -14146342 + THE1B LTR MaLR 1 364 0 204 343 9 19 chr21 30761257 30761362 -14146208 - L2 LINE L2 -1 3271 3168 1302 176 78 4 chr21 30761623 30761878 -14145692 + AluJb SINE Alu 1 274 -38 801 103 0 0 chr21 30761878 30761995 -14145575 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 180 216 0 0 chr21 30763123 30763174 -14144396 + (TG)n Simple_repeat Simple_repeat 2 52 0 456 236 0 16 chr21 30763191 30763373 -14144197 + (TG)n Simple_repeat Simple_repeat 2 180 0 469 236 0 16 chr21 30763410 30763592 -14143978 + (TG)n Simple_repeat Simple_repeat 2 180 0 255 268 0 0 chr21 30763607 30763704 -14143866 + (TG)n Simple_repeat Simple_repeat 2 98 0 536 302 89 22 chr21 30763829 30764054 -14143516 + MIR SINE MIR 23 262 0 468 0 0 0 chr21 30764544 30764596 -14142974 + (TA)n Simple_repeat Simple_repeat 1 52 0 2403 139 38 52 chr21 30764657 30764783 -14142787 + L1MB2 LINE L1 5700 5826 -345 1902 156 10 0 chr21 30764783 30765085 -14142485 + AluSx SINE Alu 1 305 -7 2403 139 38 52 chr21 30765085 30765171 -14142399 + L1MB2 LINE L1 5826 5912 -259 222 62 0 0 chr21 30765171 30765203 -14142367 + (TG)n Simple_repeat Simple_repeat 1 32 0 2403 139 38 52 chr21 30765203 30765421 -14142149 + L1MB2 LINE L1 5912 6126 -45 1786 169 0 0 chr21 30765421 30765716 -14141854 + AluJb SINE Alu 2 296 -16 2403 139 38 52 chr21 30765716 30765759 -14141811 + L1MB2 LINE L1 6126 6168 -3 506 137 53 91 chr21 30766168 30766252 -14141318 - L1M4 LINE L1 -768 5378 5300 2047 99 3 22 chr21 30766252 30766566 -14141004 - AluSc SINE Alu -1 308 1 506 137 53 91 chr21 30766566 30766626 -14140944 - L1M4 LINE L1 -846 5300 5239 1729 179 0 13 chr21 30766650 30767128 -14140442 + AluJo SINE Alu 1 474 0 382 325 45 0 chr21 30767207 30767361 -14140209 - L2 LINE L2 -227 3086 2926 295 116 0 0 chr21 30767448 30767491 -14140079 - MLT1D LTR MaLR 0 505 463 1164 95 89 0 chr21 30767491 30767660 -14139910 + AluSx SINE Alu 1 184 -128 458 259 100 107 chr21 30767662 30767932 -14139638 - L2 LINE L2 -1342 1972 1705 2026 107 7 3 chr21 30768145 30768434 -14139136 + AluSx SINE Alu 1 290 -22 219 36 0 0 chr21 30768513 30768541 -14139029 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1611 192 89 3 chr21 30768566 30768930 -14138640 + L1MA5 LINE L1 5899 6295 0 1124 187 21 13 chr21 30768930 30769165 -14138405 + L1MB3 LINE L1 5945 6181 -2 3246 216 132 76 chr21 30770090 30770300 -14137270 + L1MD3 LINE L1 6835 7032 -963 204 40 0 0 chr21 30770300 30770325 -14137245 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3246 216 132 76 chr21 30770325 30770557 -14137013 + L1MD3 LINE L1 7032 7250 -745 2283 73 0 22 chr21 30770557 30770872 -14136698 + AluY SINE Alu 1 308 -3 3246 216 132 76 chr21 30770872 30770885 -14136685 + L1MD3 LINE L1 7250 7261 -734 261 196 78 0 chr21 30770885 30770936 -14136634 + MLT1F1 LTR MaLR 76 130 -437 3246 216 132 76 chr21 30770936 30771330 -14136240 + L1MD3 LINE L1 7261 7810 -185 2295 58 0 3 chr21 30771330 30771621 -14135949 + AluY SINE Alu 1 290 -21 3246 216 132 76 chr21 30771621 30771809 -14135761 + L1MD3 LINE L1 7810 7986 -9 3685 16 28 0 chr21 30773227 30773654 -14133916 + L1PA4 LINE L1 5717 6155 0 284 268 114 49 chr21 30774149 30774272 -14133298 - MIR SINE MIR 0 262 132 256 98 0 39 chr21 30774735 30774786 -14132784 + (TTAA)n Simple_repeat Simple_repeat 1 49 0 2063 113 7 7 chr21 30775092 30775392 -14132178 - AluSx SINE Alu -12 300 1 416 310 97 26 chr21 30776041 30776196 -14131374 - L2 LINE L2 -9 3263 3098 473 345 14 0 chr21 30777083 30777231 -14130339 + MIR SINE MIR 24 173 -89 526 334 87 32 chr21 30777455 30777859 -14129711 + L2 LINE L2 2186 2611 -703 3883 156 17 8 chr21 30777988 30778851 -14128719 - L1PB4 LINE L1 -1 6155 5132 1942 106 3 30 chr21 30778851 30779153 -14128417 - AluSq SINE Alu -6 307 14 3883 156 17 8 chr21 30779153 30779165 -14128405 - L1PB4 LINE L1 -1024 5132 5122 204 340 105 37 chr21 30779268 30779562 -14128008 + L2 LINE L2 2995 3308 -5 26 30 0 0 chr21 30779567 30779600 -14127970 + AT_rich Low_complexity Low_complexity 1 33 0 309 255 69 20 chr21 30779637 30779739 -14127831 + MIR SINE MIR 39 145 -117 2370 72 3 0 chr21 30782101 30782405 -14125165 - AluSg SINE Alu -5 305 1 203 340 137 26 chr21 30782696 30782849 -14124721 - MIR3 SINE MIR -2 206 37 195 320 90 10 chr21 30783027 30783127 -14124443 - MIR SINE MIR -69 193 86 1567 174 44 55 chr21 30783222 30783521 -14124049 + MLT1A1 LTR MaLR 1 297 -68 2202 115 0 0 chr21 30783521 30783833 -14123737 + AluSx SINE Alu 1 312 0 1567 174 44 55 chr21 30783833 30783896 -14123674 + MLT1A1 LTR MaLR 297 359 -6 372 263 21 0 chr21 30783950 30784045 -14123525 - MIR3 SINE MIR -1 207 111 2332 91 0 0 chr21 30784247 30784556 -14123014 + AluSq SINE Alu 1 309 -4 686 125 18 9 chr21 30785136 30785248 -14122322 - AluJb SINE Alu -10 302 190 1957 105 49 0 chr21 30785933 30786218 -14121352 - AluSp SINE Alu -14 299 1 1928 114 12 35 chr21 30787039 30787383 -14120187 + PABL_A-int LTR ERV1 3137 3459 -1556 * 2094 98 19 3 chr21 30787380 30787698 -14119872 - MER41A-int LTR ERV1 -2357 3589 3267 454 46 0 0 chr21 30787698 30787763 -14119807 - AluSc SINE Alu -2 307 243 853 67 50 0 chr21 30787763 30787883 -14119687 - MER41A-int LTR ERV1 -2668 3278 3153 * 2334 120 36 15 chr21 30787865 30788285 -14119285 - MER41A-int LTR ERV1 -4227 3589 1074 * 4377 136 17 2 chr21 30788265 30788904 -14118666 - MER41A-int LTR ERV1 -5297 649 1 3957 107 7 0 chr21 30788990 30789540 -14118030 - MER41A LTR ERV1 0 554 1 449 187 29 35 chr21 30789545 30789716 -14117854 - MER57A-int LTR ERV1 -3028 2095 1926 312 143 18 27 chr21 30789781 30789868 -14117702 - MER57A-int LTR ERV1 -2378 2888 2416 2400 57 0 10 chr21 30789868 30790168 -14117402 + AluY SINE Alu 1 297 -14 336 247 0 11 chr21 30790283 30790372 -14117198 - MER57A-int LTR ERV1 -2890 3441 3354 522 236 0 0 chr21 30790420 30790526 -14117044 - MER57A-int LTR ERV1 -2990 3341 3236 365 226 72 46 chr21 30790538 30790771 -14116799 - MER57A-int LTR ERV1 -3643 1228 1096 267 216 0 0 chr21 30790761 30790812 -14116758 - MER57A-int LTR ERV1 -7398 139 89 * 447 98 0 0 chr21 30791023 30791084 -14116486 - MER34C LTR ERV1 -370 215 155 345 235 35 26 chr21 30791117 30791230 -14116340 - MER57A-int LTR ERV1 -3220 2726 2553 1978 107 10 17 chr21 30791327 30791626 -14115944 - MER57A-int LTR ERV1 -6695 842 546 697 84 0 11 chr21 30791629 30791724 -14115846 + MER4A LTR ERV1 2 95 -569 * 1888 136 206 0 chr21 30791723 30792062 -14115508 + MER4A LTR ERV1 256 664 0 1863 128 14 20 chr21 30792062 30792358 -14115212 - MER57A-int LTR ERV1 -6990 547 254 440 19 0 19 chr21 30792358 30792412 -14115158 - MER4E LTR ERV1 -713 53 1 466 241 11 0 chr21 30792412 30792499 -14115071 - MER57A-int LTR ERV1 -7449 88 1 2432 138 25 13 chr21 30792499 30792897 -14114673 - MER57A LTR ERV1 0 403 1 299 275 92 18 chr21 30792899 30793008 -14114562 - MIR SINE MIR -130 132 16 625 126 0 11 chr21 30793137 30793224 -14114346 + 5S rRNA rRNA 4 89 -32 238 278 99 7 chr21 30793295 30793446 -14114124 - L1M4 LINE L1 -2309 3837 3673 2337 71 0 22 chr21 30793543 30793854 -14113716 - AluY SINE Alu -7 304 1 5804 245 24 50 chr21 30794302 30797159 -14110411 - L1PA12 LINE L1 -2590 4994 2182 423 0 0 0 chr21 30797257 30797304 -14110266 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 319 269 0 0 chr21 30797439 30797517 -14110053 - L1PA12 LINE L1 -5399 2182 2105 787 338 126 26 chr21 30797691 30798224 -14109346 - L1PA12 LINE L1 -6200 1374 789 29 60 0 0 chr21 30798239 30798289 -14109281 + AT_rich Low_complexity Low_complexity 1 50 0 5123 150 47 2 chr21 30800100 30800938 -14106632 + Tigger1 DNA MER2_type 1 875 -1543 301 291 78 10 chr21 30800938 30801041 -14106529 + L2 LINE L2 3182 3291 -22 510 283 95 39 chr21 30801427 30801710 -14105860 + L1M4 LINE L1 2156 2454 -3692 2147 116 0 0 chr21 30801735 30802038 -14105532 - AluSx SINE Alu -9 303 1 2815 119 34 51 chr21 30802080 30802279 -14105291 - MER1A DNA MER1_type -2173 529 328 281 0 19 58 chr21 30802279 30802331 -14105239 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1705 138 0 32 chr21 30802336 30802618 -14104952 - AluSg SINE Alu -37 273 1 2815 119 34 51 chr21 30802618 30802906 -14104664 - MER1A DNA MER1_type -2378 324 44 192 319 43 21 chr21 30807628 30807722 -14099848 + L3 LINE CR1 650 745 -832 3484 116 12 6 chr21 30807768 30808276 -14099294 - MER9 LTR ERVK 0 511 1 2349 74 0 3 chr21 30810154 30810465 -14097105 - AluY SINE Alu -1 310 1 369 0 0 0 chr21 30810536 30810577 -14096993 + (TG)n Simple_repeat Simple_repeat 2 42 0 4515 137 37 25 chr21 30810969 30811744 -14095826 + LTR1 LTR ERV1 1 785 0 230 285 146 3 chr21 30811812 30811977 -14095593 + MIR SINE MIR 29 262 0 1786 173 13 0 chr21 30812646 30812952 -14094618 - AluJb SINE Alu -2 310 1 1582 129 0 0 chr21 30813084 30813317 -14094253 - AluSg/x SINE Alu -2 310 78 2745 7 0 0 chr21 30813367 30813675 -14093895 + AluYa5 SINE Alu 1 308 -3 187 91 23 23 chr21 30816266 30816310 -14091260 + (TG)n Simple_repeat Simple_repeat 2 45 0 254 285 17 6 chr21 30816404 30816576 -14090994 + (TG)n Simple_repeat Simple_repeat 2 175 0 2141 93 0 30 chr21 30818101 30818403 -14089167 + AluSc SINE Alu 1 293 -16 1683 170 3 0 chr21 30818526 30818808 -14088762 - AluJb SINE Alu -6 306 24 209 381 48 0 chr21 30819667 30819751 -14087819 + MIR SINE MIR 19 106 -102 686 212 0 0 chr21 30820183 30820329 -14087241 + AluJb SINE Alu 167 312 0 274 224 24 0 chr21 30820329 30820414 -14087156 + GA-rich Low_complexity Low_complexity 2 88 0 554 243 96 31 chr21 30820414 30820467 -14087103 + MLT1D LTR MaLR 180 228 -277 180 0 0 0 chr21 30820467 30820487 -14087083 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 554 243 96 31 chr21 30820487 30820725 -14086845 + MLT1D LTR MaLR 228 490 -15 391 271 93 16 chr21 30820727 30820856 -14086714 - MER5A DNA MER1_type -44 145 7 2286 77 10 13 chr21 30822697 30823007 -14084563 - AluY SINE Alu -2 309 1 2238 227 69 19 chr21 30823059 30823635 -14083935 + MER77 LTR ERV1 1 605 0 21 36 0 0 chr21 30823928 30823956 -14083614 + GC_rich Low_complexity Low_complexity 1 28 0 1964 71 0 4 chr21 30825840 30826094 -14081476 + AluY SINE Alu 53 305 -6 925 211 53 22 chr21 30826174 30826491 -14081079 - MER63D DNA MER1_type -634 427 2 2311 85 0 10 chr21 30826496 30826802 -14080768 + AluSg1 SINE Alu 1 303 -6 2491 144 31 54 chr21 30827062 30827546 -14080024 - L1MB3 LINE L1 -51 6132 5647 2051 132 7 0 chr21 30827704 30828014 -14079556 + AluSx SINE Alu 1 312 0 188 216 20 39 chr21 30828028 30828079 -14079491 - L2 LINE L2 -90 3182 3133 25 0 0 0 chr21 30828255 30828280 -14079290 + AT_rich Low_complexity Low_complexity 1 25 0 1009 212 55 9 chr21 30828387 30828604 -14078966 - MLT1B LTR MaLR 0 390 164 1913 117 25 0 chr21 30828605 30828886 -14078684 - AluSx SINE Alu -2 310 23 413 293 45 25 chr21 30828893 30829050 -14078520 + MIR SINE MIR 88 247 -15 2474 49 0 7 chr21 30831348 30831656 -14075914 - AluY SINE Alu -5 306 1 25 0 0 0 chr21 30831844 30831869 -14075701 + AT_rich Low_complexity Low_complexity 1 25 0 2099 128 0 10 chr21 30834953 30835249 -14072321 + AluSx SINE Alu 1 293 -19 870 241 59 123 chr21 30835303 30835727 -14071843 + MER21B LTR ERV1 1 397 -466 493 207 30 71 chr21 30835707 30835876 -14071694 + MER21B LTR ERV1 550 711 -152 * 349 207 11 58 chr21 30835882 30835969 -14071601 + MER21B LTR ERV1 657 739 -124 2512 70 3 0 chr21 30837371 30837671 -14069899 + AluSp SINE Alu 1 301 -12 909 223 62 19 chr21 30838035 30838246 -14069324 - MER58A DNA MER1_type -3 221 2 192 77 0 0 chr21 30838284 30838310 -14069260 + (A)n Simple_repeat Simple_repeat 1 26 0 2345 108 0 0 chr21 30838434 30838740 -14068830 + AluSx SINE Alu 1 306 -6 385 154 0 64 chr21 30839307 30839385 -14068185 + MER116 DNA Mariner 1 73 -7 2122 104 7 0 chr21 30839557 30839835 -14067735 + AluSx SINE Alu 16 295 -17 237 328 0 0 chr21 30840110 30840171 -14067399 + L2 LINE L2 3186 3246 -67 211 259 19 0 chr21 30840166 30840220 -14067350 - L2 LINE L2 -5 3267 3213 * 1827 106 33 60 chr21 30840262 30840564 -14067006 - AluJb SINE Alu -18 294 1 24 0 0 0 chr21 30841056 30841080 -14066490 + AT_rich Low_complexity Low_complexity 1 24 0 2075 101 11 0 chr21 30841083 30841361 -14066209 + AluSq SINE Alu 3 283 -30 337 110 27 0 chr21 30841378 30841451 -14066119 + (TA)n Simple_repeat Simple_repeat 1 75 0 541 225 24 47 chr21 30841455 30841624 -14065946 - MER3 DNA MER1_type -30 179 15 290 132 88 29 chr21 30843206 30843274 -14064296 - L2 LINE L2 -84 3229 3158 2217 103 0 0 chr21 30843279 30843581 -14063989 + AluSx SINE Alu 1 302 -10 2313 165 95 2 chr21 30843654 30844300 -14063270 - SATR1 Satellite Satellite -2 706 1 318 226 107 62 chr21 30844285 30844300 -14063270 - HsTC2 DNA Tc2 -102 1796 1783 * 2165 103 6 58 chr21 30844300 30844630 -14062940 - AluSp SINE Alu 0 313 1 318 226 107 62 chr21 30844630 30844791 -14062779 - HsTC2 DNA Tc2 -115 1783 1612 520 225 12 78 chr21 30844816 30845004 -14062566 + L1MA6 LINE L1 5767 5909 -391 1703 162 0 4 chr21 30845004 30845275 -14062295 + AluSx SINE Alu 11 280 -32 520 225 12 78 chr21 30845275 30845514 -14062056 + L1MA6 LINE L1 5909 6162 -138 2154 113 3 3 chr21 30845559 30845860 -14061710 - AluSp SINE Alu -12 301 1 3451 231 26 30 chr21 30845905 30846897 -14060673 + L1MB3 LINE L1 4818 5813 -370 1939 124 4 4 chr21 30846897 30847171 -14060399 + AluSx SINE Alu 6 279 -33 344 22 22 0 chr21 30847177 30847222 -14060348 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 3451 231 26 30 chr21 30847222 30847317 -14060253 + L1MB3 LINE L1 5818 5912 -271 2241 122 0 3 chr21 30847317 30847629 -14059941 + AluSx SINE Alu 1 311 -1 3451 231 26 30 chr21 30847629 30847874 -14059696 + L1MB3 LINE L1 5912 6153 -30 35 0 0 0 chr21 30847891 30847926 -14059644 + AT_rich Low_complexity Low_complexity 1 35 0 327 360 51 19 chr21 30848701 30848915 -14058655 - MIR SINE MIR -10 252 32 2193 116 0 7 chr21 30849309 30849611 -14057959 + AluSg SINE Alu 1 300 -10 2073 112 0 10 chr21 30850163 30850467 -14057103 - AluSc SINE Alu -8 301 1 1107 217 193 25 chr21 30852162 30852570 -14055000 - SATR1 Satellite Satellite -1 476 1 1092 209 229 21 chr21 30852617 30853133 -14054437 - SATR1 Satellite Satellite -2 623 1 1054 228 234 11 chr21 30853172 30853941 -14053629 - SATR1 Satellite Satellite -348 940 1 21 0 0 0 chr21 30854330 30854351 -14053219 + AT_rich Low_complexity Low_complexity 1 21 0 2131 95 65 0 chr21 30854540 30854834 -14052736 - AluSq SINE Alu 0 313 1 2132 100 30 10 chr21 30855404 30855705 -14051865 - AluSg SINE Alu -3 307 1 411 284 234 0 chr21 30855798 30856076 -14051494 - L1ME LINE L1 -344 5818 5476 4670 131 109 21 chr21 30856203 30856393 -14051177 + L1MD1 LINE L1 5191 5363 -879 2077 135 3 3 chr21 30856393 30856697 -14050873 + AluSx SINE Alu 1 304 -8 4670 131 109 21 chr21 30856697 30857463 -14050107 + L1MD1 LINE L1 5363 6223 -19 1740 168 16 16 chr21 30857584 30857893 -14049677 - AluJo SINE Alu -3 309 1 2304 89 7 0 chr21 30857906 30858198 -14049372 - AluSg SINE Alu -16 294 1 1564 101 0 23 chr21 30858385 30858603 -14048967 - AluSq SINE Alu -16 297 85 1965 149 3 3 chr21 30862448 30862744 -14044826 - AluSx SINE Alu -15 297 2 2179 107 10 3 chr21 30862797 30863096 -14044474 + AluSx SINE Alu 1 301 -11 1816 145 10 108 chr21 30865242 30865657 -14041913 + MLT1A2 LTR MaLR 1 374 0 35 0 0 0 chr21 30866661 30866696 -14040874 + AT_rich Low_complexity Low_complexity 1 35 0 2292 107 0 22 chr21 30867456 30867773 -14039797 - AluSx SINE Alu 0 312 3 1453 193 14 7 chr21 30868119 30868399 -14039171 - AluJo SINE Alu -4 308 27 2339 100 0 0 chr21 30868474 30868773 -14038797 + AluSx SINE Alu 1 299 -13 216 97 0 0 chr21 30868801 30868832 -14038738 + (TA)n Simple_repeat Simple_repeat 2 32 0 1627 148 4 26 chr21 30869457 30869721 -14037849 - AluJb SINE Alu -18 294 37 735 240 96 35 chr21 30870023 30870252 -14037318 - MIR SINE MIR -19 243 1 2160 112 7 0 chr21 30870350 30870654 -14036916 - AluY SINE Alu -5 306 1 721 219 0 8 chr21 30870658 30870786 -14036784 - FLAM_A SINE Alu -6 127 1 569 271 79 6 chr21 30871793 30871972 -14035598 - MIR3 SINE MIR -17 191 1 23 0 0 0 chr21 30875756 30875779 -14031791 + GC_rich Low_complexity Low_complexity 1 23 0 499 331 147 53 chr21 30876972 30878963 -14028607 + L2 LINE L2 235 2412 -902 504 324 108 67 chr21 30879000 30879343 -14028227 + L2 LINE L2 2915 3271 -1 216 0 0 0 chr21 30879806 30879830 -14027740 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2052 113 0 0 chr21 30879834 30880109 -14027461 - AluSx SINE Alu -37 275 1 353 268 70 13 chr21 30881780 30881937 -14025633 + L1ME4a LINE L1 5665 5830 -291 2319 97 0 0 chr21 30882262 30882560 -14025010 - AluSx SINE Alu -14 298 1 313 230 72 105 chr21 30883697 30883849 -14023721 - MIR3 SINE MIR -54 154 8 192 40 0 0 chr21 30884226 30884251 -14023319 + (CA)n Simple_repeat Simple_repeat 2 26 0 202 194 81 32 chr21 30885232 30885294 -14022276 - L3 LINE CR1 -697 880 816 1614 179 43 0 chr21 30886209 30886329 -14021241 + AluJb SINE Alu 1 114 -198 225 0 0 0 chr21 30886329 30886354 -14021216 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1614 179 43 0 chr21 30886354 30886512 -14021058 + AluJb SINE Alu 114 291 -21 1604 210 131 102 chr21 30888125 30888926 -14018644 + LTR1B LTR ERV1 3 826 0 221 278 78 22 chr21 30889008 30889098 -14018472 - MIR3 SINE MIR -24 184 90 27 0 0 0 chr21 30889153 30889180 -14018390 + AT_rich Low_complexity Low_complexity 1 27 0 1860 176 82 37 chr21 30889449 30889886 -14017684 + LTR2B LTR ERV1 34 490 0 1407 111 0 0 chr21 30889886 30890085 -14017485 + Harlequin LTR ERV1 1 199 -6697 * 24423 189 5 11 chr21 30890072 30894364 -14013206 + HERVE LTR ERV1 3543 7811 -2 1918 189 103 26 chr21 30894364 30894819 -14012751 + LTR2B LTR ERV1 1 490 0 4267 98 3 2 chr21 30895262 30895857 -14011713 + MER4A LTR ERV1 1 596 -4 1374 164 75 84 chr21 30896947 30897282 -14010288 + MER2 DNA MER2_type 14 345 0 314 227 55 37 chr21 30897475 30897638 -14009932 - L1MC5 LINE L1 -286 7675 7510 700 171 23 8 chr21 30897639 30897768 -14009802 - FRAM SINE Alu -20 156 26 455 264 140 60 chr21 30897774 30898039 -14009531 + L2 LINE L2 3028 3313 0 399 41 0 0 chr21 30898069 30898118 -14009452 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 74 0 0 chr21 30898118 30898139 -14009431 + (CATATA)n Simple_repeat Simple_repeat 2 22 0 2087 118 0 10 chr21 30898139 30898427 -14009143 - AluSx SINE Alu -27 285 1 5030 173 107 62 chr21 30898826 30900217 -14007353 + Charlie1a DNA MER1_type 1 1454 -1 1447 187 33 30 chr21 30901085 30901385 -14006185 + AluJo SINE Alu 1 301 -11 762 221 72 17 chr21 30901574 30901755 -14005815 + MIR SINE MIR 26 216 -46 2456 86 0 3 chr21 30901835 30902149 -14005421 + AluSq SINE Alu 1 313 0 2270 94 16 0 chr21 30902392 30902699 -14004871 - AluSq SINE Alu -1 312 1 35 24 0 0 chr21 30902967 30903009 -14004561 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 30903989 30904011 -14003559 + AT_rich Low_complexity Low_complexity 1 22 0 1397 234 97 14 chr21 30904137 30904650 -14002920 + L2 LINE L2 2750 3313 0 404 210 12 0 chr21 30904906 30904987 -14002583 - Charlie1 DNA MER1_type -2627 134 53 34 0 0 0 chr21 30905446 30905480 -14002090 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr21 30909970 30910006 -13997564 + AT_rich Low_complexity Low_complexity 1 36 0 1969 142 0 17 chr21 30910674 30910976 -13996594 - AluSx SINE Alu -15 297 1 243 252 96 22 chr21 30914285 30914420 -13993150 - L1MC4 LINE L1 0 8042 7898 24 53 0 0 chr21 30914483 30914521 -13993049 + AT_rich Low_complexity Low_complexity 1 38 0 257 229 313 34 chr21 30914820 30914957 -13992613 + MIR SINE MIR 19 117 -145 2511 40 0 10 chr21 30914957 30915259 -13992311 + AluY SINE Alu 1 299 -12 257 229 313 34 chr21 30915259 30915300 -13992270 + MIR SINE MIR 117 247 -15 1628 169 0 38 chr21 30915368 30915682 -13991888 + AluJo SINE Alu 5 306 -6 32 57 0 0 chr21 30915684 30915737 -13991833 + AT_rich Low_complexity Low_complexity 1 53 0 404 177 192 0 chr21 30917623 30917753 -13989817 - MER33 DNA MER1_type -14 349 195 1251 202 27 0 chr21 30917759 30917982 -13989588 - MER8 DNA MER2_type 0 239 11 882 173 0 26 chr21 30917990 30918146 -13989424 - MER33 DNA MER1_type -170 154 3 203 311 46 86 chr21 30918694 30918845 -13988725 - MIR SINE MIR -42 220 76 2329 72 0 0 chr21 30919363 30919653 -13987917 - AluSc SINE Alu -18 291 2 1435 162 19 30 chr21 30920266 30920532 -13987038 - AluJo SINE Alu -10 302 40 1839 113 9 98 chr21 30920668 30920994 -13986576 + AluSp SINE Alu 1 297 -16 2507 153 24 5 chr21 30921145 30921563 -13986007 + MSTA LTR MaLR 1 426 -2 2125 120 3 0 chr21 30922354 30922645 -13984925 + AluSx SINE Alu 1 292 -20 1600 157 81 0 chr21 30922829 30923144 -13984426 + AluJb SINE Alu 1 336 0 1070 237 60 12 chr21 30923708 30923957 -13983613 - MIR SINE MIR 0 262 2 21 36 0 0 chr21 30925076 30925104 -13982466 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr21 30925418 30925447 -13982123 + AT_rich Low_complexity Low_complexity 1 29 0 1109 128 0 0 chr21 30925693 30925894 -13981676 - AluSg/x SINE Alu 0 329 129 2322 83 0 19 chr21 30925896 30926208 -13981362 - AluY SINE Alu -2 309 4 445 109 0 0 chr21 30926251 30926315 -13981255 + MER3 DNA MER1_type 146 209 0 312 210 65 0 chr21 30926272 30926334 -13981236 - MER3 DNA MER1_type -119 90 25 * 1922 119 4 11 chr21 30927576 30927854 -13979716 + AluSx SINE Alu 1 276 -36 233 103 88 73 chr21 30929227 30929295 -13978275 - MER51D LTR ERV1 -75 582 514 1265 211 28 46 chr21 30929345 30929672 -13977898 - LTR60 LTR ERV1 -160 426 106 2186 113 0 25 chr21 30930432 30930752 -13976818 + AluSp SINE Alu 1 312 -1 288 299 101 46 chr21 30931050 30931267 -13976303 + MIR SINE MIR 22 250 -12 247 244 0 0 chr21 30931288 30931333 -13976237 + MER5C DNA MER1_type 1 45 -279 253 315 14 14 chr21 30931469 30931542 -13976028 - MER5C DNA MER1_type -248 76 4 1523 171 63 25 chr21 30933780 30934066 -13973504 - AluJb SINE Alu -1 311 15 2208 219 64 13 chr21 30934824 30934927 -13972643 + L1MC4 LINE L1 6482 6578 -1464 2268 104 0 3 chr21 30934927 30935225 -13972345 + AluSc SINE Alu 1 297 -12 2208 219 64 13 chr21 30935225 30935668 -13971902 + L1MC4 LINE L1 6578 7056 -986 281 198 74 12 chr21 30935681 30935762 -13971808 + L1MC4a LINE L1 7223 7308 -500 1863 154 0 3 chr21 30935763 30936048 -13971522 + AluJb SINE Alu 1 284 -28 1619 245 107 0 chr21 30936060 30936538 -13971032 + L1MC4 LINE L1 7369 7897 -145 222 404 40 14 chr21 30937056 30937279 -13970291 + L2 LINE L2 2854 3082 -190 1804 126 6 137 chr21 30937336 30937693 -13969877 - AluJo SINE Alu -2 310 1 22 0 0 0 chr21 30937827 30937849 -13969721 + AT_rich Low_complexity Low_complexity 1 22 0 1736 112 4 0 chr21 30937849 30938081 -13969489 + AluSx SINE Alu 56 288 -24 771 180 8 0 chr21 30938897 30939025 -13968545 + FLAM_C SINE Alu 2 130 -3 1957 126 33 7 chr21 30939263 30939565 -13968005 + AluSx SINE Alu 1 310 -2 2249 118 0 0 chr21 30939581 30939877 -13967693 - AluSq SINE Alu -17 296 1 1837 150 11 14 chr21 30939980 30940298 -13967272 + AluSx SINE Alu 5 321 0 853 241 0 0 chr21 30940588 30940754 -13966816 - FRAM SINE Alu -16 160 1 2427 69 3 0 chr21 30941397 30941688 -13965882 - AluSc SINE Alu -16 293 2 397 281 102 8 chr21 30942328 30942456 -13965114 - MIR3 SINE MIR -5 203 64 336 331 149 46 chr21 30942623 30942946 -13964624 - L2 LINE L2 -1 3312 2957 847 216 68 0 chr21 30942947 30943183 -13964387 + L1ME3A LINE L1 5603 5854 -308 799 219 71 83 chr21 30943841 30944166 -13963404 + L1ME3A LINE L1 5843 6163 -7 970 307 113 24 chr21 30944193 30944733 -13962837 - L2 LINE L2 -355 2959 2372 310 299 35 90 chr21 30944947 30945148 -13962422 - L3 LINE CR1 -774 803 614 2098 129 3 16 chr21 30945250 30945559 -13962011 + AluSx SINE Alu 1 305 -7 1114 248 100 31 chr21 30946422 30947023 -13960547 - L1MEc LINE L1 -4718 1678 1120 2257 105 3 0 chr21 30947023 30947318 -13960252 - AluSx SINE Alu -16 296 1 1114 248 100 31 chr21 30947318 30948171 -13959399 - L1MEc LINE L1 -5276 1120 43 196 242 113 0 chr21 30949085 30949147 -13958423 + MIR SINE MIR 81 149 -113 1976 203 69 53 chr21 30949194 30949491 -13958079 + MER119 DNA MER1_type 8 299 -284 2370 106 3 0 chr21 30949491 30949803 -13957767 + AluSq SINE Alu 1 313 0 1976 203 69 53 chr21 30949803 30950017 -13957553 + MER119 DNA MER1_type 299 531 -52 2331 88 3 7 chr21 30950017 30950324 -13957246 + AluSp SINE Alu 1 306 -7 1976 203 69 53 chr21 30950324 30950378 -13957192 + MER119 DNA MER1_type 531 583 0 2140 128 0 7 chr21 30951456 30951753 -13955817 + AluSg SINE Alu 1 295 -15 2378 106 3 0 chr21 30951963 30952266 -13955304 + AluSp SINE Alu 1 304 -9 269 109 22 0 chr21 30952266 30952312 -13955258 + (TA)n Simple_repeat Simple_repeat 2 48 0 2077 131 7 0 chr21 30952328 30952626 -13954944 + AluSx SINE Alu 1 300 -12 249 353 60 17 chr21 30952710 30952826 -13954744 - L2 LINE L2 -2 3270 3150 338 253 0 24 chr21 30953063 30953146 -13954424 + MER5B DNA MER1_type 72 152 -26 1712 156 3 38 chr21 30953595 30953910 -13953660 + AluJb SINE Alu 1 304 -8 2311 91 0 0 chr21 30954265 30954582 -13952988 + AluSx SINE Alu 1 317 0 1732 169 3 7 chr21 30955898 30956199 -13951371 - AluJb SINE Alu -11 301 2 180 125 0 0 chr21 30958005 30958037 -13949533 + (TCC)n Simple_repeat Simple_repeat 1 32 0 2510 31 3 3 chr21 30959315 30959607 -13947963 - AluY SINE Alu -19 292 1 633 221 101 82 chr21 30960310 30960682 -13946888 + MLT1C LTR MaLR 90 467 0 503 232 123 24 chr21 30962516 30962727 -13944843 + LTR16B LTR ERVL 233 464 0 1792 120 117 20 chr21 30963453 30963795 -13943775 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr21 30963958 30963981 -13943589 + AT_rich Low_complexity Low_complexity 1 23 0 832 218 16 16 chr21 30965655 30965843 -13941727 - MER5A DNA MER1_type -1 188 1 2257 114 0 0 chr21 30966249 30966547 -13941023 - AluSc SINE Alu -11 298 1 205 186 0 0 chr21 30967999 30968042 -13939528 + (TA)n Simple_repeat Simple_repeat 1 43 0 366 186 0 0 chr21 30968551 30968621 -13938949 + MER3 DNA MER1_type 140 209 0 * 470 176 0 11 chr21 30968621 30968669 -13938901 - MER3 DNA MER1_type -162 47 1 294 346 10 10 chr21 30968912 30969013 -13938557 + L2 LINE L2 2376 2476 -838 751 281 71 13 chr21 30969134 30969145 -13938425 + MIR SINE MIR 20 29 -233 902 179 40 35 chr21 30969145 30969346 -13938224 - MER105 DNA DNA 0 204 3 751 281 71 13 chr21 30969346 30969558 -13938012 + MIR SINE MIR 29 256 -6 1632 47 0 0 chr21 30969685 30969875 -13937695 + AluY SINE Alu 1 190 -121 868 129 23 15 chr21 30969883 30970015 -13937555 + FLAM_C SINE Alu 1 133 0 251 220 0 0 chr21 30970062 30970112 -13937458 + L1ME1 LINE L1 4838 4887 -1259 1646 137 11 49 chr21 30970188 30970547 -13937023 + MER4A LTR ERV1 261 664 0 1553 228 165 24 chr21 30970582 30971329 -13936241 + L1ME1 LINE L1 4895 5859 -307 3793 119 44 13 chr21 30971329 30971960 -13935610 - MER39B LTR ERV1 0 653 3 1553 228 165 24 chr21 30971960 30972305 -13935265 + L1ME1 LINE L1 5859 6154 -12 295 318 62 89 chr21 30972325 30972754 -13934816 + L2 LINE L2 2736 3240 -32 1564 96 40 8 chr21 30972785 30973035 -13934535 + Tigger7 DNA MER2_type 2230 2487 0 22 35 0 0 chr21 30973472 30973501 -13934069 + AT_rich Low_complexity Low_complexity 1 29 0 1277 91 37 100 chr21 30974227 30974468 -13933102 + MER30 DNA MER1_type 4 229 -1 364 257 6 53 chr21 30975823 30975899 -13931671 + L1MEc LINE L1 37 115 -6281 5684 89 61 8 chr21 30975899 30977294 -13930276 + L1PA10 LINE L1 4708 6152 -16 364 257 6 53 chr21 30977294 30977388 -13930182 + L1MEc LINE L1 115 199 -6197 336 359 93 25 chr21 30977397 30977634 -13929936 + L1MEc LINE L1 266 518 -5878 1808 152 27 20 chr21 30977851 30978147 -13929423 - AluJo SINE Alu -14 298 1 967 215 88 4 chr21 30978954 30979182 -13928388 + Tigger6 DNA MER2_type 1 247 -1350 2304 111 3 0 chr21 30979257 30979554 -13928016 - AluSx SINE Alu -14 298 1 353 269 19 6 chr21 30979748 30979915 -13927655 + L1MC5 LINE L1 7299 7571 -471 491 299 36 9 chr21 30980185 30980409 -13927161 + L1MC4 LINE L1 7782 8011 -31 537 279 123 60 chr21 30981914 30982395 -13925175 - HAL1 LINE L1 -1361 1146 636 1760 101 109 11 chr21 30982707 30982974 -13924596 - AluSq SINE Alu -20 293 1 1917 63 126 11 chr21 30983237 30983506 -13924064 + AluSg SINE Alu 1 300 0 388 306 68 14 chr21 30984308 30984455 -13923115 + MER5A DNA MER1_type 35 189 0 22 0 0 0 chr21 30988374 30988396 -13919174 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr21 30988705 30988727 -13918843 + (A)n Simple_repeat Simple_repeat 1 22 0 422 304 152 6 chr21 30990267 30990438 -13917132 - MIR3 SINE MIR -7 201 6 864 165 44 39 chr21 30990676 30990858 -13916712 - MER5A DNA MER1_type 0 189 7 360 64 0 0 chr21 30990948 30990995 -13916575 + (TG)n Simple_repeat Simple_repeat 2 48 0 294 319 121 19 chr21 30991439 30991596 -13915974 + MIR SINE MIR 88 260 -2 410 154 0 15 chr21 30991726 30991791 -13915779 + AluS SINE Alu 2 65 -253 225 204 0 0 chr21 30991791 30991814 -13915756 + Alu SINE Alu 22 47 -255 1479 172 30 43 chr21 30991814 30992116 -13915454 + AluJo SINE Alu 1 298 -14 225 204 0 0 chr21 30992116 30992136 -13915434 + Alu SINE Alu 46 65 -237 2427 68 27 0 chr21 30992697 30992992 -13914578 + AluSq SINE Alu 1 303 -10 251 254 143 0 chr21 30993113 30993239 -13914331 - L1ME4a LINE L1 -206 5915 5772 601 259 91 15 chr21 30993299 30993555 -13914015 - L1ME4a LINE L1 -462 5659 5526 2381 91 0 3 chr21 30993764 30994073 -13913497 + AluSp SINE Alu 1 308 -5 22 56 0 0 chr21 30994599 30994635 -13912935 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr21 30994663 30994689 -13912881 + AT_rich Low_complexity Low_complexity 1 26 0 2043 124 21 0 chr21 30995919 30996209 -13911361 + AluSx SINE Alu 1 296 -16 2983 73 3 3 chr21 30997548 30997903 -13909667 + THE1A LTR MaLR 1 355 0 907 224 77 35 chr21 30998102 30998443 -13909127 + MSTD LTR MaLR 3 396 0 256 206 157 29 chr21 31000851 31000953 -13906617 - MIR SINE MIR -75 133 19 1203 27 0 0 chr21 31001904 31002051 -13905519 + (GA)n Simple_repeat Simple_repeat 1 147 0 482 261 148 39 chr21 31003008 31003131 -13904439 - L1MC4a LINE L1 -1836 5972 5864 2048 96 33 17 chr21 31003131 31003433 -13904137 - AluSc SINE Alu -2 307 1 482 261 148 39 chr21 31003433 31003566 -13904004 - L1MC4a LINE L1 -1944 5864 5688 259 310 85 0 chr21 31003593 31003722 -13903848 - L1MC4a LINE L1 -481 5640 5501 1102 153 0 0 chr21 31003786 31003985 -13903585 - AluSg/x SINE Alu 0 312 125 216 0 0 0 chr21 31003985 31004009 -13903561 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2099 110 3 3 chr21 31004009 31004291 -13903279 - AluSg SINE Alu -28 282 1 21 0 0 0 chr21 31004291 31004312 -13903258 + AT_rich Low_complexity Low_complexity 1 21 0 3225 93 101 6 chr21 31004744 31005240 -13902330 - Tigger3b DNA MER2_type 0 1232 690 826 101 0 0 chr21 31005251 31005360 -13902210 - AluSg/x SINE Alu -8 304 196 1826 126 10 51 chr21 31005360 31005653 -13901917 - AluSx SINE Alu -29 283 3 2189 116 121 3 chr21 31005655 31005675 -13901895 - Tigger3b DNA MER2_type -2324 704 688 2161 130 3 0 chr21 31005675 31005974 -13901596 - AluSp SINE Alu -12 301 2 2189 116 121 3 chr21 31005974 31006332 -13901238 - Tigger3b DNA MER2_type -2340 688 281 1850 190 30 25 chr21 31006477 31006840 -13900730 - MLT1A1 LTR MaLR 0 365 1 4082 121 0 2 chr21 31006881 31007409 -13900161 + MER1A DNA MER1_type 1 527 0 1671 147 20 41 chr21 31007409 31007623 -13899947 - Tigger3b DNA MER2_type -945 286 78 1864 124 64 0 chr21 31007623 31007906 -13899664 - AluSx SINE Alu -11 301 1 1671 147 20 41 chr21 31007906 31007983 -13899587 - Tigger3b DNA MER2_type -1153 78 1 24 32 0 0 chr21 31008788 31008819 -13898751 + AT_rich Low_complexity Low_complexity 1 31 0 346 252 78 43 chr21 31009001 31009020 -13898550 + L2 LINE L2 3192 3209 -104 2189 168 25 30 chr21 31009020 31009418 -13898152 + MSTD LTR MaLR 1 396 0 346 252 78 43 chr21 31009418 31009513 -13898057 + L2 LINE L2 3209 3310 -3 2080 99 38 0 chr21 31009652 31009944 -13897626 - AluSx SINE Alu -9 303 1 2340 167 33 33 chr21 31010038 31010464 -13897106 + MSTB LTR MaLR 1 426 0 192 77 0 0 chr21 31010467 31010493 -13897077 + (A)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr21 31011287 31011314 -13896256 + AT_rich Low_complexity Low_complexity 1 27 0 266 114 0 0 chr21 31011488 31011523 -13896047 + MSTC LTR MaLR 295 329 -99 454 280 10 0 chr21 31011614 31011714 -13895856 - L2 LINE L2 -3 3269 3169 1542 196 86 11 chr21 31011869 31012446 -13895124 - LTR48 LTR ERV1 0 644 1 334 217 40 92 chr21 31013064 31013216 -13894354 - L1ME4a LINE L1 -2 6119 5976 2380 72 0 23 chr21 31013474 31013779 -13893791 + AluSg SINE Alu 1 298 -12 1415 181 55 26 chr21 31013794 31014065 -13893505 + AluJo SINE Alu 6 284 -28 4011 215 74 65 chr21 31014084 31014512 -13893058 - L1MC4 LINE L1 -38 8004 7581 2104 106 38 3 chr21 31014512 31014804 -13892766 - AluSx SINE Alu -10 302 1 4011 215 74 65 chr21 31014804 31014992 -13892578 - L1MC4 LINE L1 -461 7581 7396 1339 91 65 15 chr21 31014992 31015191 -13892379 - L1MA1 LINE L1 0 6302 6094 4011 215 74 65 chr21 31015191 31015892 -13891678 - L1MC4 LINE L1 -646 7396 6574 1815 150 37 14 chr21 31015892 31016186 -13891384 + AluJo SINE Alu 1 301 -11 4011 215 74 65 chr21 31016186 31016404 -13891166 - L1MC4 LINE L1 -1468 6574 6359 338 216 0 34 chr21 31016522 31016610 -13890960 - L1ME3A LINE L1 0 6170 6086 303 263 159 45 chr21 31016680 31016969 -13890601 - L1ME3A LINE L1 -2203 5605 5284 1720 179 7 10 chr21 31017072 31017373 -13890197 + AluJo SINE Alu 1 300 -12 853 194 0 0 chr21 31017437 31017581 -13889989 - L1PB4 LINE L1 -3 6153 6010 2825 97 11 0 chr21 31018031 31018391 -13889179 - THE1B LTR MaLR 0 364 1 3174 180 58 2 chr21 31018897 31019733 -13887837 - MER63 DNA MER1_type 0 1061 45 2902 80 46 98 chr21 31019735 31020233 -13887337 - MER41A LTR ERV1 -82 472 1 1343 123 54 0 chr21 31020233 31020437 -13887133 - MER41A-int LTR ERV1 -2 5944 5730 891 148 0 0 chr21 31020435 31020570 -13887000 - MER41A-int LTR ERV1 -1173 4773 4639 * 569 84 60 0 chr21 31020565 31020648 -13886922 - MER41A-int LTR ERV1 -5858 88 1 * 1111 90 7 0 chr21 31020648 31020803 -13886767 - MER41A LTR ERV1 0 554 399 408 271 57 70 chr21 31020966 31021210 -13886360 + Charlie8 DNA MER1_type 85 261 -2156 34 55 0 0 chr21 31021443 31021498 -13886072 + AT_rich Low_complexity Low_complexity 1 55 0 227 288 0 15 chr21 31021529 31021595 -13885975 + T-rich Low_complexity Low_complexity 3 67 0 2198 73 4 0 chr21 31021954 31022226 -13885344 - AluSp SINE Alu -2 311 39 525 90 0 0 chr21 31022962 31023040 -13884530 - AluSp/q SINE Alu -2 311 234 2076 72 11 25 chr21 31023040 31023317 -13884253 - AluSx SINE Alu -39 273 1 391 292 8 31 chr21 31025971 31025986 -13881584 - L2 LINE L2 0 3313 3299 936 95 0 0 chr21 31025986 31026123 -13881447 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 391 292 8 31 chr21 31026123 31026237 -13881333 - L2 LINE L2 -14 3299 3187 1873 155 35 3 chr21 31027318 31027608 -13879962 - AluSx SINE Alu -13 299 1 358 313 112 8 chr21 31027614 31027748 -13879822 + L2 LINE L2 3165 3312 -1 791 276 41 62 chr21 31027781 31028071 -13879499 - MLT1K LTR MaLR -13 575 292 1197 197 19 9 chr21 31028112 31028325 -13879245 + AluJo SINE Alu 2 216 -96 235 148 74 0 chr21 31028326 31028380 -13879190 + MLT1B LTR MaLR 331 388 -2 565 176 0 0 chr21 31028653 31028738 -13878832 + AluJo SINE Alu 213 297 -15 1833 158 17 0 chr21 31028741 31029033 -13878537 + AluSx SINE Alu 1 297 -15 222 91 0 0 chr21 31029047 31029080 -13878490 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 279 305 71 13 chr21 31029105 31029259 -13878311 - MLT1K LTR MaLR -425 163 1 2125 122 0 13 chr21 31029718 31030021 -13877549 + AluSx SINE Alu 1 299 -13 2294 87 40 7 chr21 31030594 31030894 -13876676 + AluSg SINE Alu 1 310 0 432 240 21 0 chr21 31031037 31031133 -13876437 + MLT1J2 LTR MaLR 37 134 -316 434 322 55 11 chr21 31031153 31031336 -13876234 + MLT1J2 LTR MaLR 251 441 -9 207 354 40 10 chr21 31031419 31031518 -13876052 - L2 LINE L2 -12 3301 3200 2325 96 3 7 chr21 31031617 31031918 -13875652 + AluSq SINE Alu 1 300 -13 401 244 33 28 chr21 31032195 31032375 -13875195 - Charlie7 DNA MER1_type -3 2609 2429 317 266 18 18 chr21 31032353 31032462 -13875108 - Charlie7 DNA MER1_type -2503 109 1 * 751 91 0 0 chr21 31032866 31032965 -13874605 - AluSg/x SINE Alu -38 274 176 189 0 0 0 chr21 31034334 31034355 -13873215 + (TA)n Simple_repeat Simple_repeat 2 22 0 922 173 0 0 chr21 31034371 31034504 -13873066 - FLAM_C SINE Alu 0 133 1 2188 191 118 34 chr21 31034997 31035419 -13872151 + MLT1D LTR MaLR 1 467 -38 2249 103 0 23 chr21 31035419 31035720 -13871850 - AluSx SINE Alu -18 294 1 2188 191 118 34 chr21 31035720 31035763 -13871807 + MLT1D LTR MaLR 467 505 0 2135 147 51 31 chr21 31036873 31037228 -13870342 - THE1B LTR MaLR -2 362 1 299 237 26 0 chr21 31037245 31037321 -13870249 + L2 LINE L2 3223 3300 -13 2394 69 28 0 chr21 31037393 31037683 -13869887 - AluSp SINE Alu -15 298 1 1370 119 99 16 chr21 31038678 31038931 -13868639 + L1MC3 LINE L1 7512 7785 0 384 22 0 0 chr21 31039237 31039282 -13868288 + (TG)n Simple_repeat Simple_repeat 1 45 0 989 103 13 0 chr21 31039304 31039460 -13868110 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1330 176 88 8 chr21 31039460 31039721 -13867849 - AluJo SINE Alu -1 437 1 1153 286 58 41 chr21 31040031 31040305 -13867265 + L2 LINE L2 1831 2099 -1215 2392 64 3 22 chr21 31040305 31040619 -13866951 - AluY SINE Alu -3 308 1 1153 286 58 41 chr21 31040619 31040876 -13866694 + L2 LINE L2 2099 2371 -943 648 218 39 103 chr21 31041079 31041198 -13866372 - MIR SINE MIR -2 260 162 2053 120 0 3 chr21 31041198 31041482 -13866088 - AluSx SINE Alu -21 291 9 648 218 39 103 chr21 31041482 31041596 -13865974 - MIR SINE MIR -100 162 42 1827 154 29 57 chr21 31041745 31042095 -13865475 + MSTD LTR MaLR 1 340 -56 22 35 0 0 chr21 31044206 31044235 -13863335 + AT_rich Low_complexity Low_complexity 1 29 0 1724 201 62 0 chr21 31044287 31044626 -13862944 - MLT1A1 LTR MaLR -5 360 1 3398 107 57 53 chr21 31044666 31045191 -13862379 + MER1A DNA MER1_type 1 527 0 231 415 46 33 chr21 31045313 31045617 -13861953 - L2 LINE L2 0 3272 2965 379 277 139 0 chr21 31045939 31046076 -13861494 + MIR SINE MIR 48 203 -59 344 274 62 9 chr21 31046634 31046747 -13860823 + LTR67 LTR ERVL 439 557 0 2732 115 78 5 chr21 31046776 31047175 -13860395 + MSTA LTR MaLR 1 428 0 2007 147 3 0 chr21 31047920 31048219 -13859351 + AluJo SINE Alu 1 300 -12 189 74 0 0 chr21 31050391 31050418 -13857152 + (TC)n Simple_repeat Simple_repeat 1 27 0 2264 116 0 3 chr21 31050430 31050741 -13856829 - AluSx SINE Alu -2 310 1 521 325 29 10 chr21 31050904 31051113 -13856457 - L3 LINE CR1 -102 1475 1263 1800 178 0 7 chr21 31051315 31051608 -13855962 - AluJo SINE Alu -21 291 1 1474 186 11 0 chr21 31051807 31052081 -13855489 + AluSx SINE Alu 36 312 0 533 216 128 0 chr21 31052166 31052268 -13855302 + FLAM_A SINE Alu 8 122 -20 5248 111 10 68 chr21 31052502 31052847 -13854723 - Tigger4(Zombi) DNA MER2_type 0 2731 2367 2137 88 0 47 chr21 31052847 31053178 -13854392 + AluSg SINE Alu 1 317 0 5248 111 10 68 chr21 31053178 31053238 -13854332 - Tigger4(Zombi) DNA MER2_type -364 2367 2305 7591 57 0 0 chr21 31053238 31054325 -13853245 + L1PA6 LINE L1 5055 6146 -8 5248 111 10 68 chr21 31054325 31054827 -13852743 - Tigger4(Zombi) DNA MER2_type -426 2305 1875 953 147 7 0 chr21 31054830 31054973 -13852597 - Tigger4(Zombi) DNA MER2_type -2587 144 1 3939 134 15 3 chr21 31054979 31055596 -13851974 + L1MB8 LINE L1 5554 6177 -1 1886 177 0 0 chr21 31055630 31055930 -13851640 - MLT2B1 LTR ERVL -20 500 201 2731 39 0 0 chr21 31056001 31056307 -13851263 + AluY SINE Alu 1 306 -5 2091 109 0 30 chr21 31057236 31057539 -13850031 + AluSg SINE Alu 1 294 -16 904 250 68 0 chr21 31058626 31058846 -13848724 - MIR SINE MIR 0 262 28 277 287 80 0 chr21 31058861 31059015 -13848555 - L1M4 LINE L1 -1077 5069 4904 1648 198 33 24 chr21 31059101 31059434 -13848136 + MLT1A1 LTR MaLR 30 365 0 1456 255 107 41 chr21 31059445 31059521 -13848049 - L1ME3A LINE L1 -344 5826 5756 1746 162 3 51 chr21 31059521 31059836 -13847734 - AluJo SINE Alu -12 300 1 1456 255 107 41 chr21 31059836 31060397 -13847173 - L1ME3A LINE L1 -414 5756 5233 2189 118 3 7 chr21 31060397 31060701 -13846869 - AluSp SINE Alu -10 303 1 1456 255 107 41 chr21 31060701 31060847 -13846723 - L1ME3A LINE L1 -937 5233 5098 307 159 159 0 chr21 31060847 31060916 -13846654 + MER116 DNA Mariner 1 80 0 1456 255 107 41 chr21 31060916 31061224 -13846346 - L1ME3A LINE L1 -1072 5098 4638 1481 116 30 17 chr21 31061254 31061487 -13846083 - L1MA5A LINE L1 -7 6290 6055 2148 88 7 14 chr21 31061733 31062029 -13845541 - AluSg SINE Alu -16 294 1 1722 99 5 0 chr21 31062053 31062276 -13845294 - AluSp SINE Alu -89 224 1 1639 179 0 10 chr21 31062434 31062730 -13844840 - AluJo SINE Alu -19 293 1 2528 55 0 3 chr21 31063056 31063364 -13844206 - AluY SINE Alu -4 307 1 360 328 87 28 chr21 31063971 31064328 -13843242 + L1ME LINE L1 5378 5755 -366 314 318 80 40 chr21 31064329 31064530 -13843040 - MIR SINE MIR -27 235 27 395 253 217 81 chr21 31065990 31066211 -13841359 + MIR SINE MIR 12 262 0 2082 126 10 3 chr21 31066325 31066627 -13840943 - AluSx SINE Alu -8 304 1 367 291 116 62 chr21 31066722 31067223 -13840347 + L1M4 LINE L1 3813 4340 -1806 1462 144 9 9 chr21 31068164 31068393 -13839177 + AluJb SINE Alu 75 303 -9 21 0 0 0 chr21 31068603 31068624 -13838946 + AT_rich Low_complexity Low_complexity 1 21 0 346 256 113 60 chr21 31068823 31068956 -13838614 - L2 LINE L2 0 3313 3174 404 305 107 6 chr21 31069260 31069437 -13838133 + MIR SINE MIR 20 214 -48 243 167 77 64 chr21 31069451 31069529 -13838041 - MIR SINE MIR -108 100 22 249 188 263 12 chr21 31069638 31069718 -13837852 + MIR3 SINE MIR 105 204 -4 595 200 27 0 chr21 31069719 31069829 -13837741 + MER81 DNA DNA 2 114 0 2373 136 20 30 chr21 31070799 31071159 -13836411 + MSTA LTR MaLR 1 358 -70 2255 106 3 0 chr21 31071159 31071451 -13836119 - AluSg SINE Alu -17 293 1 2373 136 20 30 chr21 31071451 31071494 -13836076 + MSTA LTR MaLR 358 400 -28 277 105 0 0 chr21 31072071 31072109 -13835461 + MSTA LTR MaLR 391 428 0 1439 165 30 15 chr21 31072548 31072814 -13834756 + MSTA LTR MaLR 51 320 -108 193 350 17 0 chr21 31072989 31073049 -13834521 + L3 LINE CR1 1492 1552 -25 198 0 0 0 chr21 31073191 31073213 -13834357 + (TAA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr21 31073215 31073237 -13834333 + AT_rich Low_complexity Low_complexity 1 22 0 1903 116 36 0 chr21 31073237 31073514 -13834056 - AluSx SINE Alu -25 287 1 1474 191 3 66 chr21 31074277 31074581 -13832989 - AluJo SINE Alu -13 289 5 430 223 87 0 chr21 31075362 31075465 -13832105 - MER5A DNA MER1_type -77 112 1 393 323 11 54 chr21 31075504 31075690 -13831880 - MIR SINE MIR -6 256 79 2469 70 0 0 chr21 31076602 31076901 -13830669 - AluY SINE Alu -12 299 1 246 195 7 62 chr21 31077264 31077347 -13830223 + MIR SINE MIR 74 149 -59 1774 141 38 3 chr21 31077552 31077842 -13829728 - AluJb SINE Alu -12 300 1 321 226 86 11 chr21 31077924 31078017 -13829553 - MIR SINE MIR -78 184 85 186 71 0 0 chr21 31078124 31078152 -13829418 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 30 0 0 0 chr21 31082010 31082040 -13825530 + AT_rich Low_complexity Low_complexity 1 30 0 247 25 50 0 chr21 31082040 31082080 -13825490 + (CAA)n Simple_repeat Simple_repeat 1 42 0 823 211 7 0 chr21 31082591 31082743 -13824827 - L1PB4 LINE L1 -3 6153 6001 496 302 19 53 chr21 31082744 31082834 -13824736 - L1ME4a LINE L1 -215 5906 5814 2264 110 0 3 chr21 31082834 31083133 -13824437 - AluSq SINE Alu -15 298 1 496 302 19 53 chr21 31083133 31083360 -13824210 - L1ME4a LINE L1 -307 5814 5600 2856 185 18 58 chr21 31083471 31084129 -13823441 - LTR27 LTR ERV1 -2 634 3 13250 164 39 49 chr21 31084131 31087400 -13820170 - HUERS-P3b LTR ERV1 -1 6995 2746 2354 101 0 0 chr21 31087400 31087708 -13819862 + AluY SINE Alu 4 311 0 13250 164 39 49 chr21 31087708 31088091 -13819479 - HUERS-P3b LTR ERV1 -4250 2746 2361 274 146 21 0 chr21 31088092 31088140 -13819430 - MER52C LTR ERV1 0 1278 1230 4937 217 115 28 chr21 31088150 31089487 -13818083 - MER52A LTR ERV1 -247 1508 55 2040 159 35 5 chr21 31089756 31090211 -13817359 - MER41-int LTR ERV1 -4384 1451 632 2426 147 133 15 chr21 31090211 31090686 -13816884 - LTR28 LTR ERV1 -489 531 1 2119 106 0 58 chr21 31091456 31091767 -13815803 - AluSg SINE Alu -17 293 1 426 222 111 9 chr21 31092576 31092684 -13814886 + L2 LINE L2 3194 3312 -1 220 340 75 0 chr21 31092796 31092902 -13814668 + MIR3 SINE MIR 85 198 -10 203 189 19 0 chr21 31093084 31093137 -13814433 + CT-rich Low_complexity Low_complexity 3 56 0 2204 125 0 0 chr21 31093990 31094286 -13813284 + AluSx SINE Alu 1 296 -16 1945 120 0 75 chr21 31094288 31094654 -13812916 + AluSc SINE Alu 1 309 0 303 300 35 110 chr21 31094914 31095204 -13812366 - L2 LINE L2 -31 3241 2974 354 184 0 0 chr21 31095205 31095281 -13812289 + (TG)n Simple_repeat Simple_repeat 2 77 0 546 253 27 27 chr21 31095613 31095799 -13811771 + MIR SINE MIR 35 220 -42 251 321 19 9 chr21 31096142 31096248 -13811322 - MLT1L LTR MaLR -6 609 503 1739 160 21 0 chr21 31096560 31096841 -13810729 - AluSx SINE Alu -21 291 5 28 0 0 0 chr21 31097020 31097048 -13810522 + AT_rich Low_complexity Low_complexity 1 28 0 2882 149 7 63 chr21 31097057 31097627 -13809943 - L1MB2 LINE L1 -7 6164 5627 270 309 24 12 chr21 31099524 31099608 -13807962 + C-rich Low_complexity Low_complexity 5 89 0 211 53 26 26 chr21 31099610 31099648 -13807922 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 632 93 49 44 chr21 31099716 31099766 -13807804 + (TCTA)n Simple_repeat Simple_repeat 1 49 -599 2074 146 21 29 chr21 31099766 31100144 -13807426 + THE1C LTR MaLR 1 375 0 632 93 49 44 chr21 31100144 31100362 -13807208 + (TCTA)n Simple_repeat Simple_repeat 49 648 0 634 274 42 9 chr21 31100977 31101189 -13806381 + MIR SINE MIR 27 245 -17 205 311 54 0 chr21 31101200 31101274 -13806296 + L2 LINE L2 3196 3273 -40 3029 211 62 70 chr21 31102888 31103105 -13804465 + L1ME2 LINE L1 3730 3947 -2199 2354 62 3 14 chr21 31103105 31103396 -13804174 + AluY SINE Alu 17 304 -7 3029 211 62 70 chr21 31103396 31104192 -13803378 + L1ME2 LINE L1 3947 4747 -1399 2689 87 3 11 chr21 31104192 31104550 -13803020 - THE1A LTR MaLR 0 355 1 11754 89 12 11 chr21 31104550 31106128 -13801442 - THE1A-int LTR MaLR 0 1580 1 2755 74 8 0 chr21 31106128 31106480 -13801090 - THE1A LTR MaLR 0 355 1 3029 211 62 70 chr21 31106480 31106524 -13801046 + L1ME2 LINE L1 4744 4782 -1364 1956 182 61 27 chr21 31106547 31106954 -13800616 - MER72 LTR ERV1 -22 700 280 405 307 50 34 chr21 31107102 31107281 -13800289 - MER72 LTR ERV1 -532 190 9 2178 83 50 23 chr21 31107302 31107603 -13799967 + AluSc SINE Alu 1 309 0 915 241 81 43 chr21 31107655 31107839 -13799731 + L1ME2 LINE L1 4844 5020 -1142 2037 131 0 0 chr21 31107839 31108113 -13799457 + AluSx SINE Alu 1 274 -38 617 0 14 0 chr21 31108120 31108193 -13799377 + (TAAAA)n Simple_repeat Simple_repeat 3 76 0 915 241 81 43 chr21 31108193 31108380 -13799190 + L1ME2 LINE L1 5025 5204 -958 297 51 0 0 chr21 31108380 31108419 -13799151 + (CA)n Simple_repeat Simple_repeat 2 40 0 915 241 81 43 chr21 31108419 31108668 -13798902 + L1ME2 LINE L1 5204 5502 -660 2903 137 138 44 chr21 31108668 31109231 -13798339 - LTR26E LTR ERV1 -6 616 1 1036 218 111 0 chr21 31109277 31109538 -13798032 + L1ME2 LINE L1 5597 5886 -278 993 190 9 65 chr21 31109543 31109775 -13797795 - MLT1B LTR MaLR -164 226 8 190 259 74 0 chr21 31110718 31110772 -13796798 - L3 LINE CR1 -3 1574 1517 273 57 0 0 chr21 31110774 31110809 -13796761 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 627 289 53 16 chr21 31111831 31112077 -13795493 + MIR SINE MIR 8 262 0 4514 122 3 0 chr21 31112174 31112807 -13794763 - MER41B LTR ERV1 0 635 1 635 305 157 31 chr21 31112844 31113329 -13794241 - LTR67 LTR ERVL -11 546 1 574 193 128 0 chr21 31113517 31113626 -13793944 + FLAM_C SINE Alu 1 123 -10 258 289 19 77 chr21 31113783 31113939 -13793631 - MARNA DNA Mariner -85 501 355 359 268 138 0 chr21 31113942 31114065 -13793505 + MIR SINE MIR 119 258 -4 480 266 48 0 chr21 31114075 31114199 -13793371 - MARNA DNA Mariner -282 304 175 241 197 42 14 chr21 31115011 31115082 -13792488 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 181 200 0 0 chr21 31115257 31115292 -13792278 - L2 LINE L2 -15 3257 3223 2821 45 0 0 chr21 31115638 31115972 -13791598 - L1PA5 LINE L1 -8 6146 5813 1096 204 22 0 chr21 31116331 31116561 -13791009 + LTR43 LTR ERV1 176 410 -192 333 217 54 43 chr21 31116586 31116678 -13790892 + MER41E LTR ERV1 361 453 -59 363 23 0 0 chr21 31117774 31117818 -13789752 + (CA)n Simple_repeat Simple_repeat 2 45 0 1065 174 139 27 chr21 31118305 31118564 -13789006 + MER58B DNA MER1_type 37 324 -17 468 321 85 69 chr21 31118887 31119348 -13788222 - L3 LINE CR1 -117 1460 993 3197 133 14 4 chr21 31119608 31120128 -13787442 + L1MB3 LINE L1 5659 6183 0 413 322 82 11 chr21 31120196 31120379 -13787191 + L1MC4a LINE L1 5446 5641 -2167 606 210 23 51 chr21 31120388 31120564 -13787006 + L1MC4a LINE L1 5715 5885 -1923 2024 121 14 3 chr21 31120691 31120981 -13786589 + AluJb SINE Alu 1 293 -19 1277 98 0 0 chr21 31120982 31121146 -13786424 + AluY SINE Alu 133 296 -15 231 167 0 0 chr21 31121255 31121297 -13786273 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1134 225 53 11 chr21 31121875 31122137 -13785433 + MLT1E LTR MaLR 1 273 -320 890 142 20 10 chr21 31122704 31123098 -13784472 + CT-rich Low_complexity Low_complexity 1 397 0 1799 165 36 7 chr21 31123098 31123401 -13784169 - AluJo SINE Alu 0 312 1 1976 146 0 3 chr21 31123927 31124214 -13783356 - AluSx SINE Alu -26 286 1 505 219 117 0 chr21 31124231 31124359 -13783211 + MIR SINE MIR 50 192 -70 2749 98 3 11 chr21 31124963 31125341 -13782229 - THE1C LTR MaLR 0 375 1 230 219 47 0 chr21 31125523 31125587 -13781983 + MLT1J1 LTR MaLR 65 131 -315 613 238 84 35 chr21 31125648 31125848 -13781722 + MLT1J2 LTR MaLR 243 450 0 216 0 0 0 chr21 31126224 31126248 -13781322 + (T)n Simple_repeat Simple_repeat 1 24 0 259 275 0 55 chr21 31127154 31127209 -13780361 - MIR SINE MIR -64 198 148 2280 95 0 7 chr21 31127209 31127504 -13780066 - AluSc SINE Alu -16 293 1 259 275 0 55 chr21 31127504 31127539 -13780031 - MIR SINE MIR -114 148 113 1386 197 15 34 chr21 31127805 31128134 -13779436 - L1MB4 LINE L1 -150 6030 5713 1886 242 167 5 chr21 31128392 31129033 -13778537 + LTR50 LTR ERVL 1 745 -50 2508 212 67 24 chr21 31129653 31130281 -13777289 + L1MC4 LINE L1 7202 7856 -186 5198 131 59 10 chr21 31130294 31131746 -13775824 + L1PA16 LINE L1 4675 6165 -1 204 217 0 0 chr21 31131834 31131880 -13775690 + GA-rich Low_complexity Low_complexity 1 46 0 241 256 11 67 chr21 31131881 31131971 -13775599 + L1MD3 LINE L1 7896 7980 -15 252 282 10 39 chr21 31132943 31133046 -13774524 + MIR SINE MIR 41 140 -68 2701 142 9 16 chr21 31133053 31133498 -13774072 + MER65A LTR ERV1 3 444 -1 885 276 183 9 chr21 31133601 31134043 -13773527 - LTR33 LTR ERVL -2 519 1 355 259 26 17 chr21 31134250 31134366 -13773204 - HERVL LTR ERVL -429 5335 5219 1805 302 66 39 chr21 31134587 31134610 -13772960 - HERVL LTR ERVL -840 4924 4903 1615 194 14 76 chr21 31134610 31135033 -13772537 - MLT2C1 LTR ERVL 0 397 1 1805 302 66 39 chr21 31135033 31135494 -13772076 - HERVL LTR ERVL -861 4903 4456 2261 149 56 17 chr21 31135494 31135702 -13771868 - MSTB LTR MaLR -2 424 226 249 33 0 0 chr21 31135702 31135732 -13771838 + (GA)n Simple_repeat Simple_repeat 1 30 0 2261 149 56 17 chr21 31135732 31135931 -13771639 - MSTB LTR MaLR -200 226 1 1805 302 66 39 chr21 31135931 31136011 -13771559 - HERVL LTR ERVL -1308 4456 4380 1728 192 175 0 chr21 31136011 31136406 -13771164 + MLT2C2 LTR ERVL 1 464 0 1805 302 66 39 chr21 31136406 31136661 -13770909 - HERVL LTR ERVL -1384 4380 4133 1763 180 30 62 chr21 31136661 31137061 -13770509 - MLT1B LTR MaLR -3 387 1 1805 302 66 39 chr21 31137061 31137272 -13770298 - HERVL LTR ERVL -1631 4133 3805 288 274 0 24 chr21 31137779 31137863 -13769707 + GA-rich Low_complexity Low_complexity 3 84 0 1003 176 6 12 chr21 31137863 31138033 -13769537 + MER63A DNA MER1_type 40 208 -2 406 207 0 11 chr21 31138102 31138189 -13769381 - LTR33 LTR ERVL 0 521 436 204 189 66 28 chr21 31138199 31138305 -13769265 + (TTAA)n Simple_repeat Simple_repeat 2 111 0 * 313 189 73 4 chr21 31138248 31138693 -13768877 + (TA)n Simple_repeat Simple_repeat 1 475 0 570 293 98 13 chr21 31138719 31138944 -13768626 - LTR33 LTR ERVL -74 447 204 416 200 13 0 chr21 31138993 31139068 -13768502 - MER81 DNA DNA 0 114 39 496 215 0 66 chr21 31140127 31140223 -13767347 + AluJ SINE Alu 17 105 -207 2426 96 73 14 chr21 31140223 31140567 -13767003 - THE1B LTR MaLR 0 364 1 496 215 0 66 chr21 31140567 31140591 -13766979 + AluJ SINE Alu 105 129 -183 29 47 0 0 chr21 31140581 31140624 -13766946 + AT_rich Low_complexity Low_complexity 1 43 0 * 2283 146 65 28 chr21 31141679 31141723 -13765847 - MLT2C2 LTR ERVL -14 450 409 323 44 22 0 chr21 31141723 31141768 -13765802 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 2283 146 65 28 chr21 31141768 31142155 -13765415 - MLT2C2 LTR ERVL -55 409 3 2202 128 0 0 chr21 31142273 31142570 -13765000 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr21 31143180 31143201 -13764369 + AT_rich Low_complexity Low_complexity 1 21 0 1074 84 0 123 chr21 31143201 31143404 -13764166 - L1PA11 LINE L1 -3 6171 5994 2128 144 0 10 chr21 31143417 31143723 -13763847 - AluSx SINE Alu -9 303 1 386 320 64 0 chr21 31143780 31143905 -13763665 - LTR33 LTR ERVL -376 145 13 552 239 25 92 chr21 31144399 31144637 -13762933 - MIR SINE MIR 0 262 41 236 271 12 0 chr21 31145294 31145379 -13762191 + A-rich Low_complexity Low_complexity 4 89 0 294 264 46 46 chr21 31145500 31145697 -13761873 + L1MEd LINE L1 860 1056 -5063 1391 212 134 44 chr21 31145881 31146358 -13761212 - MLT2B1 LTR ERVL 0 520 1 541 263 68 19 chr21 31146506 31146711 -13760859 + MIR SINE MIR 17 231 -31 1040 184 11 0 chr21 31146980 31147159 -13760411 + MER20 DNA MER1_type 39 219 0 967 144 26 0 chr21 31147273 31147426 -13760144 + AluJ SINE Alu 137 293 -9 1431 148 24 81 chr21 31148228 31148525 -13759045 + AluJo SINE Alu 14 293 -19 288 0 0 0 chr21 31149281 31149313 -13758257 + (A)n Simple_repeat Simple_repeat 1 32 0 1782 170 0 10 chr21 31150078 31150378 -13757192 - AluJo SINE Alu -15 297 1 202 289 144 19 chr21 31150968 31151072 -13756498 - L2 LINE L2 -6 3266 3150 235 328 104 8 chr21 31151072 31151197 -13756373 - L2 LINE L2 -2 3270 3134 1025 188 88 0 chr21 31151346 31151538 -13756032 + MER3 DNA MER1_type 1 209 0 1328 274 236 45 chr21 31152266 31152451 -13755119 + HAL1 LINE L1 1 149 -2358 2197 173 47 87 chr21 31152451 31153028 -13754542 + MLT2B3 LTR ERVL 1 554 0 1328 274 236 45 chr21 31153028 31153707 -13753863 + HAL1 LINE L1 149 1030 -1477 5414 139 42 30 chr21 31153708 31154877 -13752693 - L1MA7 LINE L1 0 6291 5111 1549 268 114 50 chr21 31154943 31155913 -13751657 + HAL1 LINE L1 1121 2153 -354 1678 159 21 24 chr21 31155943 31156232 -13751338 + AluJo SINE Alu 15 302 -10 975 268 42 38 chr21 31156241 31156424 -13751146 - MER93a LTR ERV1 -28 374 188 2554 134 41 12 chr21 31156424 31156835 -13750735 - MSTB LTR MaLR -3 423 1 975 268 42 38 chr21 31156835 31156964 -13750606 - MER93a LTR ERV1 -214 188 61 240 35 0 0 chr21 31157122 31157151 -13750419 + (TG)n Simple_repeat Simple_repeat 1 29 0 554 261 51 26 chr21 31157178 31157412 -13750158 + HAL1 LINE L1 2212 2451 -56 1596 181 7 36 chr21 31157424 31157728 -13749842 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr21 31157785 31157807 -13749763 + AT_rich Low_complexity Low_complexity 1 22 0 1775 126 50 4 chr21 31158321 31158582 -13748988 - AluJb SINE Alu 0 312 40 622 257 60 33 chr21 31158977 31159277 -13748293 + L1MC5 LINE L1 7620 7927 -34 235 218 39 0 chr21 31159278 31159356 -13748214 + (TA)n Simple_repeat Simple_repeat 2 82 0 2178 106 10 3 chr21 31159385 31159677 -13747893 + AluSq SINE Alu 1 294 -19 260 311 82 41 chr21 31159705 31159827 -13747743 - MIR3 SINE MIR -50 158 32 453 173 71 31 chr21 31160117 31160244 -13747326 + L1ME4a LINE L1 5979 6110 -11 1977 118 70 0 chr21 31160268 31160555 -13747015 - AluSq SINE Alu -4 309 3 3495 101 11 2 chr21 31160561 31161035 -13746535 - MER1A DNA MER1_type -7 522 45 210 71 0 0 chr21 31161814 31161842 -13745728 + (TC)n Simple_repeat Simple_repeat 1 28 0 2311 103 7 0 chr21 31162263 31162563 -13745007 + AluSx SINE Alu 1 302 -10 2453 4 0 0 chr21 31163200 31163460 -13744110 - AluYa5 SINE Alu -1 310 51 2165 168 24 3 chr21 31163600 31163982 -13743588 + MLT1B LTR MaLR 1 390 0 253 313 0 0 chr21 31163983 31164050 -13743520 - MIR SINE MIR -61 147 81 2453 78 0 19 chr21 31164053 31164372 -13743198 - AluSp SINE Alu 0 313 1 321 282 98 31 chr21 31164660 31164823 -13742747 + MER5B DNA MER1_type 2 175 -3 1827 180 19 26 chr21 31165503 31165569 -13742001 - MLT1F LTR MaLR -2 540 475 2173 128 3 0 chr21 31165569 31165867 -13741703 + AluSc SINE Alu 1 299 -10 1827 180 19 26 chr21 31165867 31166178 -13741392 - MLT1F LTR MaLR -67 475 166 673 96 0 0 chr21 31166186 31166280 -13741290 - AluSg/x SINE Alu -6 304 211 270 248 160 24 chr21 31166828 31167034 -13740536 - MIR SINE MIR -15 247 3 2761 77 22 0 chr21 31167119 31167484 -13740086 + THE1C LTR MaLR 1 373 -2 225 205 0 0 chr21 31167797 31167836 -13739734 - MLT1C LTR MaLR 0 467 429 1368 213 87 16 chr21 31167836 31168146 -13739424 + MER2 DNA MER2_type 1 332 -13 1520 171 56 115 chr21 31168148 31168610 -13738960 - MLT1C LTR MaLR -32 435 1 867 200 19 0 chr21 31169230 31169385 -13738185 + MLT1F LTR MaLR 1 158 -384 1844 140 41 0 chr21 31169395 31169666 -13737904 + AluJb SINE Alu 1 282 -30 192 77 0 0 chr21 31169667 31169693 -13737877 + (CA)n Simple_repeat Simple_repeat 1 26 0 2354 97 0 7 chr21 31169781 31170081 -13737489 + AluSg SINE Alu 1 298 -12 924 203 23 55 chr21 31170110 31170327 -13737243 + MER20 DNA MER1_type 10 219 0 2439 157 76 9 chr21 31171198 31171631 -13735939 - MLT1C LTR MaLR -5 462 1 246 195 0 0 chr21 31172336 31172377 -13735193 + Alu SINE Alu 129 169 -133 1051 106 0 14 chr21 31172464 31172599 -13734971 + AluJb SINE Alu 1 134 -173 1720 188 7 3 chr21 31172599 31172908 -13734662 + AluSx SINE Alu 1 310 -2 2166 114 4 0 chr21 31173329 31173654 -13733916 - AluJb SINE Alu 0 326 1 800 211 11 32 chr21 31173927 31174112 -13733458 - MER5A DNA MER1_type -4 185 5 1782 174 3 0 chr21 31174424 31174705 -13732865 + AluJo SINE Alu 1 283 -24 234 0 0 0 chr21 31174705 31174731 -13732839 + (CACAA)n Simple_repeat Simple_repeat 2 27 0 228 86 0 0 chr21 31175453 31175488 -13732082 + (TG)n Simple_repeat Simple_repeat 1 35 0 603 276 84 25 chr21 31175623 31175862 -13731708 + MIR SINE MIR 6 258 -4 648 311 104 18 chr21 31176308 31176691 -13730879 - LTR16C LTR ERVL 0 491 76 320 233 121 35 chr21 31176918 31177034 -13730536 + MIR SINE MIR 51 176 -86 989 167 6 0 chr21 31177035 31177191 -13730379 + FRAM SINE Alu 1 155 -21 383 195 12 0 chr21 31177194 31177276 -13730294 + MIR SINE MIR 168 250 -12 5303 168 24 5 chr21 31177618 31178860 -13728710 - L1MB8 LINE L1 -1 6177 4904 4007 110 4 9 chr21 31178868 31179423 -13728147 + MER41A LTR ERV1 3 554 0 1151 233 92 18 chr21 31180131 31180555 -13727015 - MLT1J LTR MaLR -7 504 25 180 0 0 0 chr21 31180962 31180982 -13726588 + (T)n Simple_repeat Simple_repeat 1 20 0 2215 107 0 19 chr21 31183342 31183650 -13723920 - AluSg SINE Alu -8 302 1 235 343 0 0 chr21 31185773 31185846 -13721724 + GA-rich Low_complexity Low_complexity 3 75 0 403 125 47 0 chr21 31186367 31186431 -13721139 + MER53 DNA DNA 5 71 -118 1820 182 3 10 chr21 31186859 31187161 -13720409 + AluJo SINE Alu 1 300 -12 529 262 149 6 chr21 31188420 31188588 -13718982 - MER91A DNA MER1_type -4 192 1 1990 138 3 3 chr21 31189306 31189589 -13717981 - AluJo SINE Alu -29 283 1 293 213 74 88 chr21 31190694 31190910 -13716660 - HAL1 LINE L1 0 2507 2295 * 430 242 100 55 chr21 31190879 31191209 -13716361 - HAL1 LINE L1 -1363 1144 800 475 240 46 46 chr21 31191278 31191453 -13716117 + L2 LINE L2 3134 3308 -5 530 247 124 21 chr21 31191669 31191863 -13715707 + MIR SINE MIR 2 215 -47 2241 119 0 0 chr21 31192060 31192354 -13715216 + AluSx SINE Alu 3 296 -16 846 145 13 33 chr21 31193174 31193348 -13714222 + FRAM SINE Alu 1 168 0 1655 151 50 17 chr21 31193766 31194065 -13713505 + AluJo SINE Alu 1 309 -3 552 223 180 34 chr21 31194096 31194110 -13713460 - L1ME4a LINE L1 -83 6038 6027 4307 73 7 0 chr21 31194110 31194659 -13712911 + MER41A LTR ERV1 2 554 0 552 223 180 34 chr21 31194659 31194948 -13712622 - L1ME4a LINE L1 -94 6027 5689 824 148 0 0 chr21 31195023 31195151 -13712419 + MER2 DNA MER2_type 46 173 -172 222 37 0 0 chr21 31195190 31195217 -13712353 + (CA)n Simple_repeat Simple_repeat 2 28 0 2215 230 83 17 chr21 31195992 31196592 -13710978 - L1MC4a LINE L1 -12 7796 7157 1830 169 14 20 chr21 31196953 31197301 -13710269 - MER31A LTR ERV1 0 485 140 3114 133 8 49 chr21 31197303 31197505 -13710065 + MER50 LTR ERV1 2 211 -523 2298 103 0 13 chr21 31197505 31197805 -13709765 - AluSx SINE Alu -14 298 3 3114 133 8 49 chr21 31197805 31198026 -13709544 + MER50 LTR ERV1 211 401 -333 2279 164 32 127 chr21 31198026 31198702 -13708868 - LTR9 LTR ERV1 0 612 1 3114 133 8 49 chr21 31198702 31198804 -13708766 + MER50 LTR ERV1 401 506 -228 619 73 34 7 chr21 31198812 31199046 -13708524 - AluY SINE Alu -15 296 1 1306 152 24 0 chr21 31199047 31199258 -13708312 + MER50 LTR ERV1 505 720 -14 771 195 13 25 chr21 31199253 31199412 -13708158 - MER31B LTR ERV1 -309 157 1 * 2355 92 23 0 chr21 31200889 31201192 -13706378 + AluSq SINE Alu 1 310 -3 227 171 0 0 chr21 31201211 31201252 -13706318 + C-rich Low_complexity Low_complexity 1 41 0 653 286 78 66 chr21 31202324 31202682 -13704888 - L1MC4a LINE L1 -298 5823 5471 1746 178 0 26 chr21 31203890 31204199 -13703371 + AluJb SINE Alu 4 304 -8 362 282 83 13 chr21 31204946 31205102 -13702468 + MIR SINE MIR 48 214 -48 2229 132 0 0 chr21 31205447 31205758 -13701812 - AluSx SINE Alu -1 311 1 1791 250 62 20 chr21 31206041 31206585 -13700985 + MER69 DNA AcHobo 1 567 -659 696 192 31 21 chr21 31206571 31206624 -13700946 + MER69 DNA AcHobo 2276 2327 -199 * 375 23 0 0 chr21 31206624 31206668 -13700902 + (CA)n Simple_repeat Simple_repeat 1 44 0 696 192 31 21 chr21 31206668 31206807 -13700763 + MER69 DNA AcHobo 2327 2470 -56 885 172 0 0 chr21 31207800 31207980 -13699590 + (TG)n Simple_repeat Simple_repeat 1 180 0 598 183 22 32 chr21 31209672 31209991 -13697579 + GA-rich Low_complexity Low_complexity 1 316 0 448 314 101 0 chr21 31210629 31210798 -13696772 + MIR SINE MIR 77 262 0 399 132 0 0 chr21 31211872 31211940 -13695630 + (TCCCC)n Simple_repeat Simple_repeat 1 68 0 435 258 71 7 chr21 31212084 31212239 -13695331 - L1MC4a LINE L1 -1963 5845 5681 263 214 0 18 chr21 31212340 31212396 -13695174 - L1MC4a LINE L1 -454 5667 5613 265 261 62 46 chr21 31212445 31212575 -13694995 - L1MC4a LINE L1 -611 5510 5379 27 0 0 0 chr21 31212777 31212804 -13694766 + AT_rich Low_complexity Low_complexity 1 27 0 770 98 0 49 chr21 31212804 31212927 -13694643 - AluJo SINE Alu -177 135 19 550 143 0 18 chr21 31213178 31213290 -13694280 + (TCCCC)n Simple_repeat Simple_repeat 2 111 0 1848 209 45 112 chr21 31213426 31213865 -13693705 + L1MC4 LINE L1 6465 6837 -1205 1946 185 53 22 chr21 31213865 31214282 -13693288 - MSTB1 LTR MaLR -2 430 1 1848 209 45 112 chr21 31214282 31214575 -13692995 + L1MC4 LINE L1 6837 7148 -894 822 126 67 22 chr21 31214597 31214732 -13692838 - FLAM_C SINE Alu -2 141 1 401 149 0 15 chr21 31214733 31214800 -13692770 + MLT1C LTR MaLR 402 467 0 4192 186 27 12 chr21 31214800 31215623 -13691947 + L1MB8 LINE L1 5343 6177 -1 1351 290 113 36 chr21 31215620 31216320 -13691250 + L1MC4 LINE L1 7135 7910 -132 * 342 0 0 0 chr21 31216320 31216358 -13691212 + (TG)n Simple_repeat Simple_repeat 2 39 0 1351 290 113 36 chr21 31216358 31216487 -13691083 + L1MC4 LINE L1 7910 8028 -14 2404 118 27 3 chr21 31217433 31217799 -13689771 - THE1C LTR MaLR 0 375 1 1832 179 31 8 chr21 31217960 31218317 -13689253 - MLT1A1 LTR MaLR 0 365 1 547 271 54 29 chr21 31218598 31218838 -13688732 - L1MEd LINE L1 -4974 1145 900 689 231 26 13 chr21 31219774 31219930 -13687640 - MLT1C LTR MaLR 0 467 310 186 325 39 0 chr21 31219954 31220031 -13687539 - MIR SINE MIR -69 139 60 2165 134 0 0 chr21 31220084 31220382 -13687188 + AluJb SINE Alu 1 298 -14 214 242 0 0 chr21 31221157 31221223 -13686347 + T-rich Low_complexity Low_complexity 6 71 0 6533 106 20 9 chr21 31222098 31223269 -13684301 - L1PB1 LINE L1 0 6151 4959 244 107 36 89 chr21 31223493 31223549 -13684021 - MER67D LTR ERV1 -313 201 149 1855 180 13 32 chr21 31223590 31223962 -13683608 - MLT1A1 LTR MaLR 0 365 1 1401 242 51 20 chr21 31225010 31225555 -13682015 + L1MC5 LINE L1 7356 7917 -44 535 208 16 32 chr21 31225778 31225903 -13681667 + L2 LINE L2 3191 3313 0 24 32 0 0 chr21 31226229 31226260 -13681310 + AT_rich Low_complexity Low_complexity 1 31 0 4121 186 22 39 chr21 31226270 31226369 -13681201 + MER21B LTR ERV1 2 101 -762 4085 189 30 50 chr21 31226369 31227357 -13680213 + LTR5 LTR ERVK 1 969 0 4121 186 22 39 chr21 31227357 31227683 -13679887 + MER21B LTR ERV1 101 431 -432 2306 89 10 119 chr21 31227683 31228087 -13679483 + THE1B LTR MaLR 5 364 0 4121 186 22 39 chr21 31228087 31228473 -13679097 + MER21B LTR ERV1 431 800 -63 215 313 62 9 chr21 31228632 31228744 -13678826 + MIR SINE MIR 37 154 -108 3116 225 79 21 chr21 31228748 31229644 -13677926 + L1M4 LINE L1 3696 4643 -1503 404 15 45 15 chr21 31229655 31229721 -13677849 + (CA)n Simple_repeat Simple_repeat 2 69 0 372 321 24 0 chr21 31229728 31229896 -13677674 + HAL1b LINE L1 1176 1347 -1 656 269 62 64 chr21 31230284 31230791 -13676779 - MLT1J LTR MaLR -6 505 1 26 0 0 0 chr21 31231125 31231151 -13676419 + AT_rich Low_complexity Low_complexity 1 26 0 203 313 50 0 chr21 31231431 31231511 -13676059 + L2 LINE L2 3185 3268 -4 635 128 120 0 chr21 31231514 31231631 -13675939 - L1MA4A LINE L1 -149 6154 6024 587 261 94 30 chr21 31231897 31232131 -13675439 + MIR SINE MIR 1 249 -13 308 297 146 21 chr21 31232139 31232331 -13675239 - MIR SINE MIR 0 262 47 2219 116 0 3 chr21 31232648 31232949 -13674621 - AluSg SINE Alu -10 300 1 334 298 127 29 chr21 31233002 31233247 -13674323 + MLT1K LTR MaLR 5 273 -315 960 155 0 0 chr21 31233293 31233435 -13674135 + FRAM SINE Alu 1 141 -35 1099 186 2 27 chr21 31233652 31233908 -13673662 - L1M2 LINE L1 -657 5514 5270 2486 213 77 16 chr21 31233971 31234248 -13673322 + MER76 LTR ERV 1 259 -429 2238 140 34 14 chr21 31234248 31234605 -13672965 + THE1B LTR MaLR 1 364 0 2486 213 77 16 chr21 31234605 31234974 -13672596 + MER76 LTR ERV 259 687 -1 1594 191 20 7 chr21 31235440 31235734 -13671836 + MLT1A1 LTR MaLR 1 298 -67 1897 113 38 0 chr21 31235734 31235999 -13671571 - AluSx SINE Alu -37 275 1 673 258 273 18 chr21 31236033 31236421 -13671149 + MLT1K LTR MaLR 79 565 -23 249 359 113 0 chr21 31236436 31236542 -13671028 - L2 LINE L2 -1 3271 3154 254 245 113 28 chr21 31236636 31236742 -13670828 + L2 LINE L2 3199 3313 0 382 230 50 86 chr21 31237092 31237231 -13670339 + MIR SINE MIR 36 169 -93 188 196 65 22 chr21 31237334 31237380 -13670190 + MER5A DNA MER1_type 142 189 0 558 206 224 29 chr21 31237440 31237610 -13669960 + MER63A DNA MER1_type 1 203 -7 392 198 25 0 chr21 31237876 31237957 -13669613 + MLT1G1 LTR MaLR 507 589 -6 672 291 77 9 chr21 31239710 31239930 -13667640 - MIR SINE MIR -13 249 15 2782 98 13 10 chr21 31240952 31241341 -13666229 - MLT1B LTR MaLR 0 390 1 283 155 0 17 chr21 31241411 31241469 -13666101 + L1ME4a LINE L1 6062 6118 -3 2404 129 49 33 chr21 31241776 31242201 -13665369 + MSTB1 LTR MaLR 1 432 0 551 292 115 31 chr21 31242696 31243018 -13664552 - LTR33 LTR ERVL 0 521 173 1406 265 78 15 chr21 31243191 31243655 -13663915 - MLT1D LTR MaLR -7 498 6 519 169 20 113 chr21 31243891 31244116 -13663454 - L1 LINE L1 -3570 2576 2400 1192 288 60 19 chr21 31244409 31244826 -13662744 + MLT1J LTR MaLR 1 434 -77 1089 276 77 33 chr21 31245624 31246076 -13661494 - MLT1J LTR MaLR -37 474 3 255 246 0 29 chr21 31246210 31246279 -13661291 + L2 LINE L2 3239 3305 -8 549 274 43 35 chr21 31246586 31246816 -13660754 + L1MC4a LINE L1 5522 5753 -2055 317 237 92 23 chr21 31246889 31247020 -13660550 + MLT1J LTR MaLR 326 465 -46 344 337 48 11 chr21 31247089 31247276 -13660294 + L1MC4a LINE L1 5819 6012 -1796 2163 99 7 0 chr21 31247802 31248094 -13659476 - AluSx SINE Alu -18 294 1 280 234 97 57 chr21 31248181 31248356 -13659214 + L1MC4a LINE L1 5868 6049 -1759 442 68 0 27 chr21 31248487 31248560 -13659010 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 212 254 34 0 chr21 31249662 31249721 -13657849 - MER5A DNA MER1_type -83 106 46 22 56 0 0 chr21 31250073 31250109 -13657461 + GC_rich Low_complexity Low_complexity 1 36 0 231 221 74 95 chr21 31251589 31251684 -13655886 + MIR SINE MIR 103 195 -67 351 296 74 7 chr21 31252272 31252407 -13655163 + MIR SINE MIR 87 230 -32 194 250 21 0 chr21 31252620 31252668 -13654902 - L2 LINE L2 -7 3265 3217 234 156 0 0 chr21 31255926 31255971 -13651599 + (CCG)n Simple_repeat Simple_repeat 1 45 0 311 160 13 0 chr21 31256788 31256863 -13650707 + CT-rich Low_complexity Low_complexity 1 76 0 227 184 0 20 chr21 31257595 31257644 -13649926 + (CCG)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr21 31257730 31257766 -13649804 + GC_rich Low_complexity Low_complexity 1 36 0 1905 135 3 25 chr21 31261420 31261738 -13645832 + AluSp SINE Alu 1 311 -2 624 259 12 18 chr21 31262924 31263090 -13644480 - MIR SINE MIR -51 211 47 24 32 0 0 chr21 31263299 31263330 -13644240 + GC_rich Low_complexity Low_complexity 1 31 0 253 204 75 43 chr21 31265177 31265270 -13642300 + MIR SINE MIR 96 191 -71 421 242 87 17 chr21 31265460 31265598 -13641972 + MIR SINE MIR 49 187 -21 2135 113 10 7 chr21 31265977 31266287 -13641283 - AluSx SINE Alu -1 311 1 2176 190 55 2 chr21 31266897 31267319 -13640251 - L1MB5 LINE L1 0 6174 5731 272 337 31 17 chr21 31267392 31267523 -13640047 + MIR3 SINE MIR 69 201 -7 2094 92 49 0 chr21 31268500 31268784 -13638786 - AluSq SINE Alu -15 298 1 487 270 133 24 chr21 31268808 31269019 -13638551 + L2 LINE L2 3079 3312 -1 3562 113 4 2 chr21 31270142 31270646 -13636924 - L1PA15 LINE L1 0 6165 5661 965 294 139 3 chr21 31271863 31272223 -13635347 - MLT1J LTR MaLR -102 409 1 263 292 193 23 chr21 31272378 31272549 -13635021 - MIR SINE MIR 0 262 63 1141 203 35 0 chr21 31273429 31273631 -13633939 + MER3 DNA MER1_type 1 209 0 1188 191 19 0 chr21 31274328 31274543 -13633027 - MER20 DNA MER1_type 0 219 1 271 256 375 12 chr21 31274896 31275056 -13632514 - MIR SINE MIR 0 262 45 867 164 0 0 chr21 31275131 31275290 -13632280 - L1MD3 LINE L1 0 7995 7837 1394 197 76 3 chr21 31275290 31275646 -13631924 + AluJb SINE Alu 1 377 0 603 182 13 62 chr21 31275646 31275822 -13631748 - L1MD3 LINE L1 -142 7853 7594 2326 46 0 3 chr21 31276843 31277149 -13630421 + AluY SINE Alu 1 305 0 204 256 24 37 chr21 31277736 31277818 -13629752 - L2 LINE L2 -215 3057 2977 269 298 50 1 chr21 31277952 31278046 -13629524 + MER5A DNA MER1_type 54 164 -25 242 291 13 38 chr21 31278040 31278119 -13629451 - MIR3 SINE MIR -49 159 83 * 234 274 65 0 chr21 31279122 31279184 -13628386 - L2 LINE L2 0 3313 3248 341 197 8 114 chr21 31279557 31279645 -13627925 + L1MB2 LINE L1 6047 6118 -53 2354 79 0 0 chr21 31279645 31279948 -13627622 + AluY SINE Alu 1 303 -8 341 197 8 114 chr21 31279948 31279991 -13627579 + L1MB2 LINE L1 6118 6164 -7 584 244 81 47 chr21 31280722 31280894 -13626676 + MER45A DNA AcHobo 1 178 0 472 51 64 90 chr21 31281177 31281223 -13626347 + MADE1 DNA Mariner 5 51 -29 2199 89 0 0 chr21 31281223 31281544 -13626026 - AluSx SINE Alu 0 321 1 472 51 64 90 chr21 31281544 31281574 -13625996 + MADE1 DNA Mariner 51 80 0 204 97 0 0 chr21 31281817 31281848 -13625722 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 1551 194 0 78 chr21 31282837 31283224 -13624346 - MLT1B LTR MaLR 0 390 34 303 243 179 2 chr21 31283484 31283624 -13623946 - MIR3 SINE MIR -11 197 35 236 278 219 33 chr21 31283909 31284060 -13623510 + MIR SINE MIR 26 204 -58 473 276 41 119 chr21 31285359 31285957 -13621613 - MLT1H LTR MaLR 0 590 4 834 129 7 50 chr21 31286575 31286714 -13620856 + AluJo SINE Alu 2 134 -178 309 232 0 0 chr21 31286772 31286841 -13620729 - L2 LINE L2 -1 3312 3244 320 366 43 7 chr21 31286868 31287147 -13620423 - L2 LINE L2 -205 3108 2820 189 0 0 0 chr21 31287208 31287229 -13620341 + (TC)n Simple_repeat Simple_repeat 1 21 0 358 226 52 0 chr21 31287637 31287752 -13619818 - MER115 DNA AcHobo -539 154 34 312 225 56 34 chr21 31289544 31289633 -13617937 + MIR SINE MIR 117 207 -55 456 235 144 13 chr21 31290179 31290332 -13617238 + MER5A DNA MER1_type 6 178 -11 536 256 146 57 chr21 31290603 31290986 -13616584 - L2 LINE L2 -1 3312 2896 432 189 212 38 chr21 31291336 31291394 -13616176 + MER5A DNA MER1_type 9 56 -133 945 236 0 0 chr21 31291394 31291568 -13616002 + FAM SINE Alu 2 175 0 432 189 212 38 chr21 31291568 31291641 -13615929 + MER5A DNA MER1_type 56 163 -26 424 315 27 0 chr21 31291759 31291905 -13615665 - MIR SINE MIR -92 170 21 2354 137 31 62 chr21 31291934 31292264 -13615306 - MLT1C LTR MaLR 0 467 155 2670 31 0 9 chr21 31292264 31292582 -13614988 + L1PA5 LINE L1 5840 6154 0 2354 137 31 62 chr21 31292582 31292733 -13614837 - MLT1C LTR MaLR -312 155 1 653 283 27 5 chr21 31292776 31292960 -13614610 - MIR SINE MIR -44 218 31 255 61 0 0 chr21 31293036 31293069 -13614501 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 2499 84 10 0 chr21 31293069 31293379 -13614191 - AluSq SINE Alu 0 313 1 247 244 0 0 chr21 31293689 31293734 -13613836 + MIR SINE MIR 218 262 0 182 125 0 0 chr21 31293740 31293772 -13613798 - L2 LINE L2 -20 3252 3221 459 224 20 88 chr21 31293772 31293796 -13613774 - MIR SINE MIR -14 248 224 1662 185 44 0 chr21 31293796 31294094 -13613476 - AluJb SINE Alu -1 311 1 459 224 20 88 chr21 31294094 31294184 -13613386 - MIR SINE MIR -38 224 112 2190 128 7 3 chr21 31295645 31295951 -13611619 + AluSx SINE Alu 1 307 -5 303 28 0 0 chr21 31296016 31296052 -13611518 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr21 31296115 31296136 -13611434 + AT_rich Low_complexity Low_complexity 1 21 0 2403 123 42 68 chr21 31299378 31299874 -13607696 + L1MB2 LINE L1 5689 6171 0 357 75 0 0 chr21 31300438 31300491 -13607079 + (TCC)n Simple_repeat Simple_repeat 1 53 0 21 82 0 0 chr21 31300554 31300603 -13606967 + GC_rich Low_complexity Low_complexity 1 49 0 261 210 17 50 chr21 31300846 31300965 -13606605 + (CCGCG)n Simple_repeat Simple_repeat 3 117 0 22 35 0 0 chr21 31301015 31301044 -13606526 + GC_rich Low_complexity Low_complexity 1 29 0 212 287 19 102 chr21 31305642 31305799 -13601771 - MIR3 SINE MIR -9 199 56 333 286 209 0 chr21 31306762 31306867 -13600703 - MIR SINE MIR -26 236 110 213 177 32 32 chr21 31307199 31307261 -13600309 + T-rich Low_complexity Low_complexity 4 65 0 369 75 0 0 chr21 31307577 31307630 -13599940 + (TGG)n Simple_repeat Simple_repeat 3 55 0 468 254 100 0 chr21 31308214 31308344 -13599226 + MIR SINE MIR 82 224 -38 1949 162 0 13 chr21 31308458 31308761 -13598809 + AluJb SINE Alu 1 299 -13 211 189 19 75 chr21 31309396 31309449 -13598121 - L2 LINE L2 0 3313 3264 378 107 0 0 chr21 31309577 31309633 -13597937 + (GGGAA)n Simple_repeat Simple_repeat 4 59 0 602 178 0 17 chr21 31309855 31309964 -13597606 + MER96B DNA MER1_type? 9 117 -300 2124 97 29 4 chr21 31309964 31310242 -13597328 + AluSq SINE Alu 1 285 -28 256 241 17 0 chr21 31310269 31310385 -13597185 + (TA)n Simple_repeat Simple_repeat 2 119 0 464 125 94 10 chr21 31310385 31310481 -13597089 + MER96B DNA MER1_type? 114 217 -200 380 281 96 7 chr21 31310684 31310830 -13596740 + MIR SINE MIR 15 173 -89 2303 110 0 0 chr21 31311887 31312179 -13595391 + AluSx SINE Alu 1 292 -20 1965 122 37 0 chr21 31312493 31312808 -13594762 - AluSc SINE Alu 0 325 1 328 316 64 53 chr21 31312811 31313143 -13594427 - L1ME4a LINE L1 0 6121 5781 1028 158 13 0 chr21 31313143 31313301 -13594269 - FRAM SINE Alu -6 160 1 328 316 64 53 chr21 31313301 31313404 -13594166 - L1ME4a LINE L1 -340 5781 5681 2130 130 7 3 chr21 31313563 31313864 -13593706 - AluSx SINE Alu -9 303 2 248 302 147 9 chr21 31314335 31314451 -13593119 - L1ME4a LINE L1 -2166 5642 5511 428 239 119 8 chr21 31314519 31314653 -13592917 - MER21B LTR ERV1 -371 492 344 1300 208 44 22 chr21 31315041 31315358 -13592212 + MER33 DNA MER1_type 1 324 0 306 50 0 0 chr21 31315421 31315461 -13592109 + (TC)n Simple_repeat Simple_repeat 2 41 0 751 234 101 0 chr21 31315551 31315739 -13591831 + MER63A DNA MER1_type 1 207 -3 290 318 96 9 chr21 31316020 31316240 -13591330 + LTR67 LTR ERVL 279 517 -40 2903 148 29 18 chr21 31316399 31316568 -13591002 + L1MB3 LINE L1 5655 5821 -362 2435 97 0 0 chr21 31316568 31316878 -13590692 + AluSg SINE Alu 1 310 0 2903 148 29 18 chr21 31316878 31317221 -13590349 + L1MB3 LINE L1 5821 6173 -10 1564 164 63 7 chr21 31317239 31317508 -13590062 + AluJo SINE Alu 3 286 -26 521 242 23 8 chr21 31317820 31317952 -13589618 + Charlie8 DNA MER1_type 75 208 -2209 1956 157 39 40 chr21 31319559 31320111 -13587459 - MLT2A2 LTR ERVL 0 554 1 2270 110 0 19 chr21 31320145 31320455 -13587115 - AluSx SINE Alu -8 304 1 184 271 49 74 chr21 31320941 31321063 -13586507 - L2 LINE L2 -1815 1499 1381 2304 96 0 0 chr21 31321512 31321822 -13585748 - AluSq SINE Alu 0 310 1 1669 152 38 4 chr21 31322003 31322266 -13585304 + AluJb SINE Alu 40 311 -1 2160 134 16 0 chr21 31322600 31322907 -13584663 - AluSx SINE Alu 0 312 1 331 321 41 5 chr21 31323373 31323569 -13584001 + L1ME4a LINE L1 5701 5903 -218 244 237 43 0 chr21 31323590 31323683 -13583887 + L1ME4a LINE L1 5995 6091 -30 317 225 125 0 chr21 31324041 31324121 -13583449 + L1ME4a LINE L1 5815 5904 -217 23 0 0 0 chr21 31324125 31324148 -13583422 + AT_rich Low_complexity Low_complexity 1 23 0 842 166 13 0 chr21 31324153 31324310 -13583260 + L1MD3 LINE L1 7837 7995 0 404 269 119 63 chr21 31324354 31324486 -13583084 + L1ME4a LINE L1 1091 1214 -4907 2296 64 11 4 chr21 31324486 31324790 -13582780 + AluSp SINE Alu 1 306 0 404 269 119 63 chr21 31324790 31324903 -13582667 + L1ME4a LINE L1 1214 6112 -9 32 0 0 0 chr21 31324930 31324962 -13582608 + AT_rich Low_complexity Low_complexity 1 32 0 195 186 0 0 chr21 31326243 31326286 -13581284 + T-rich Low_complexity Low_complexity 3 45 0 219 36 0 0 chr21 31326286 31326314 -13581256 + (TG)n Simple_repeat Simple_repeat 1 28 0 30 59 0 0 chr21 31326974 31327025 -13580545 + AT_rich Low_complexity Low_complexity 1 51 0 799 298 98 50 chr21 31327040 31327134 -13580436 + L1ME4a LINE L1 5615 5703 -418 1656 164 10 45 chr21 31327134 31327297 -13580273 - AluJo SINE Alu -13 299 151 2537 69 3 3 chr21 31327297 31327603 -13579967 - AluY SINE Alu -5 306 1 1656 164 10 45 chr21 31327603 31327749 -13579821 - AluJo SINE Alu -161 151 1 799 298 98 50 chr21 31327749 31328131 -13579439 + L1ME4a LINE L1 5703 6114 -7 27 0 0 0 chr21 31328135 31328162 -13579408 + AT_rich Low_complexity Low_complexity 1 27 0 911 129 8 0 chr21 31328853 31328985 -13578585 + AluSq/x SINE Alu 1 133 -180 2234 117 3 0 chr21 31328990 31329289 -13578281 + AluSx SINE Alu 1 300 -12 1888 86 63 8 chr21 31329682 31329950 -13577620 - AluSx SINE Alu -24 288 6 1402 123 123 4 chr21 31330150 31330418 -13577152 - L1MA3 LINE L1 0 6305 6006 371 234 76 25 chr21 31330446 31330604 -13576966 - L1ME4a LINE L1 -1 6120 5955 1942 151 3 13 chr21 31330910 31331222 -13576348 + AluJb SINE Alu 1 309 -3 446 297 39 47 chr21 31332419 31332541 -13575029 + MIR SINE MIR 32 153 -109 2419 97 3 0 chr21 31332541 31332850 -13574720 + AluY SINE Alu 1 310 -1 446 297 39 47 chr21 31332850 31332959 -13574611 + MIR SINE MIR 153 261 -1 319 233 58 0 chr21 31332991 31333094 -13574476 + L1ME4a LINE L1 6011 6119 -2 1821 154 0 14 chr21 31333565 31333857 -13573713 + AluJb SINE Alu 11 298 -14 218 191 24 0 chr21 31334289 31334331 -13573239 - MIR SINE MIR -161 101 59 1069 246 87 54 chr21 31334478 31334926 -13572644 - MLT1C LTR MaLR 0 467 5 730 300 152 55 chr21 31335049 31336210 -13571360 + L2 LINE L2 1246 2518 -796 2658 43 0 0 chr21 31337043 31337347 -13570223 + AluY SINE Alu 1 304 -7 234 0 0 0 chr21 31337388 31337414 -13570156 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 518 323 71 5 chr21 31337552 31337750 -13569820 + MIR SINE MIR 13 223 -39 720 172 55 16 chr21 31337833 31337961 -13569609 - FLAM_A SINE Alu 0 133 1 668 149 25 106 chr21 31338969 31339069 -13568501 + MER5B DNA MER1_type 25 110 -68 2205 82 7 0 chr21 31339069 31339379 -13568191 - AluSp SINE Alu 0 312 1 668 149 25 106 chr21 31339379 31339438 -13568132 + MER5B DNA MER1_type 110 172 -6 347 298 121 16 chr21 31340484 31340608 -13566962 + MIR3 SINE MIR 18 154 -54 835 245 16 0 chr21 31340981 31341165 -13566405 - MIR SINE MIR -26 236 50 180 111 0 0 chr21 31343671 31343698 -13563872 + (GA)n Simple_repeat Simple_repeat 2 28 0 1548 138 45 28 chr21 31344892 31345183 -13562387 - AluJo SINE Alu -16 296 1 185 0 40 0 chr21 31346694 31346719 -13560851 + (TTG)n Simple_repeat Simple_repeat 2 27 0 309 68 0 0 chr21 31347917 31347961 -13559609 + (CA)n Simple_repeat Simple_repeat 2 45 0 366 294 125 19 chr21 31348364 31348524 -13559046 + MIR SINE MIR 74 250 -12 2169 110 0 0 chr21 31348661 31348960 -13558610 + AluSx SINE Alu 1 299 -13 2139 115 0 0 chr21 31349433 31349728 -13557842 + AluSx SINE Alu 1 295 -17 749 300 52 29 chr21 31350190 31350500 -13557070 + L1MC/D LINE L1 5469 5785 -2023 1918 153 0 0 chr21 31350589 31350890 -13556680 + AluJb SINE Alu 1 301 -11 466 242 181 13 chr21 31351369 31351518 -13556052 + MIR SINE MIR 7 180 -82 29 47 0 0 chr21 31351588 31351631 -13555939 + AT_rich Low_complexity Low_complexity 1 43 0 550 234 48 7 chr21 31352733 31352878 -13554692 - MIR SINE MIR -95 167 17 1991 119 0 29 chr21 31354295 31354606 -13552964 + AluSx SINE Alu 2 303 -9 189 94 0 0 chr21 31356940 31356972 -13550598 + (T)n Simple_repeat Simple_repeat 1 32 0 201 74 0 0 chr21 31356984 31357011 -13550559 + (TA)n Simple_repeat Simple_repeat 1 27 0 265 207 52 0 chr21 31358481 31358539 -13549031 - MIR SINE MIR -32 230 170 466 210 222 6 chr21 31359147 31359314 -13548256 + LTR37B LTR ERV1 1 203 -265 2216 92 0 0 chr21 31359329 31359675 -13547895 - AluSg SINE Alu 0 310 1 317 196 0 0 chr21 31359679 31359735 -13547835 - L1MC4 LINE L1 0 8042 7987 3279 221 107 109 chr21 31359739 31360487 -13547083 - L1MC4 LINE L1 -143 7899 7030 833 128 8 8 chr21 31360487 31360612 -13546958 - FLAM_C SINE Alu -17 126 2 3279 221 107 109 chr21 31360612 31361148 -13546422 - L1MC4 LINE L1 -1012 7030 6494 24 0 0 0 chr21 31361192 31361216 -13546354 + AT_rich Low_complexity Low_complexity 1 24 0 3703 138 34 45 chr21 31362068 31362369 -13545201 + L1MB3 LINE L1 5475 5778 -405 1626 140 4 0 chr21 31362369 31362619 -13544951 + AluSx SINE Alu 56 306 -6 3703 138 34 45 chr21 31362619 31362924 -13544646 + L1MB3 LINE L1 5778 6085 -98 2121 108 10 0 chr21 31362924 31363229 -13544341 - AluSx SINE Alu -4 308 1 3703 138 34 45 chr21 31363229 31363289 -13544281 + L1MB3 LINE L1 6085 6136 -47 2153 114 0 0 chr21 31363289 31363596 -13543974 + AluSg SINE Alu 1 307 -3 3703 138 34 45 chr21 31363596 31363643 -13543927 + L1MB3 LINE L1 6136 6182 -1 302 302 207 0 chr21 31363654 31363770 -13543800 + MIR SINE MIR 123 262 0 262 338 115 7 chr21 31364375 31364514 -13543056 - MIR SINE MIR -74 188 35 600 259 25 19 chr21 31364605 31364763 -13542807 - MIR SINE MIR -31 231 73 2049 105 0 14 chr21 31365124 31365420 -13542150 + AluY SINE Alu 3 294 -17 25 0 0 0 chr21 31365705 31365730 -13541840 + AT_rich Low_complexity Low_complexity 1 25 0 2358 53 3 3 chr21 31366376 31366678 -13540892 - AluY SINE Alu -9 302 1 528 301 21 0 chr21 31367565 31367708 -13539862 - MIR SINE MIR -69 193 48 1699 169 3 22 chr21 31367716 31368029 -13539541 + AluJb SINE Alu 1 307 -5 2277 100 0 3 chr21 31368037 31368348 -13539222 + AluSq SINE Alu 1 310 -3 1373 243 70 7 chr21 31368429 31368841 -13538729 + Charlie4a DNA MER1_type 39 476 -32 390 275 18 9 chr21 31370287 31370396 -13537174 - MIR3 SINE MIR -54 154 45 377 305 51 0 chr21 31370476 31370594 -13536976 + L2 LINE L2 3149 3272 0 2173 77 3 7 chr21 31371437 31371744 -13535826 - AluY SINE Alu 0 311 1 2089 133 39 33 chr21 31372099 31372459 -13535111 + THE1B LTR MaLR 1 362 -2 201 246 88 0 chr21 31372558 31372615 -13534955 + MIR SINE MIR 190 251 -11 684 208 0 15 chr21 31373384 31373514 -13534056 + FLAM_A SINE Alu 1 128 -5 22 56 0 0 chr21 31373522 31373558 -13534012 + AT_rich Low_complexity Low_complexity 1 36 0 345 250 99 68 chr21 31373865 31374168 -13533402 - MLT1H LTR MaLR -4 545 120 377 257 133 0 chr21 31374301 31374406 -13533164 - MER5B DNA MER1_type 0 178 60 318 260 0 13 chr21 31374466 31374543 -13533027 + MER5B DNA MER1_type 8 83 -95 2071 117 16 0 chr21 31374570 31374877 -13532693 + AluSx SINE Alu 1 312 0 272 300 129 7 chr21 31374957 31375097 -13532473 - L2 LINE L2 -1 3312 3156 706 231 80 25 chr21 31375680 31375879 -13531691 - MER63A DNA MER1_type 0 210 1 1038 233 137 9 chr21 31376545 31376949 -13530621 + LTR16C LTR ERVL 1 491 0 197 229 0 14 chr21 31377269 31377339 -13530231 + GA-rich Low_complexity Low_complexity 4 72 0 2018 118 10 0 chr21 31377432 31377728 -13529842 + AluSx SINE Alu 1 299 -13 2057 122 0 22 chr21 31378425 31378744 -13528826 + AluSx SINE Alu 1 312 0 2224 96 0 0 chr21 31380387 31380689 -13526881 - AluY SINE Alu -9 302 1 1820 157 7 0 chr21 31381158 31381444 -13526126 - AluJo SINE Alu -24 288 1 2190 90 7 0 chr21 31381492 31381791 -13525779 - AluSq SINE Alu -12 301 1 567 78 0 0 chr21 31381852 31381929 -13525641 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 2114 114 0 0 chr21 31382996 31383294 -13524276 + AluSx SINE Alu 1 298 -14 844 192 0 0 chr21 31384334 31384480 -13523090 + FRAM SINE Alu 1 146 -30 29 0 0 25 chr21 31384483 31384506 -13523064 + AT_rich Low_complexity Low_complexity 1 24 -15 2081 123 0 16 chr21 31384506 31384815 -13522755 + AluSx SINE Alu 1 304 -8 29 0 0 25 chr21 31384815 31384831 -13522739 + AT_rich Low_complexity Low_complexity 24 39 0 1372 158 91 8 chr21 31384841 31385095 -13522475 + AluJo SINE Alu 2 276 -36 514 158 0 0 chr21 31385099 31385175 -13522395 + polypurine Low_complexity Low_complexity 1 76 0 688 171 29 5 chr21 31385175 31385394 -13522176 + GA-rich Low_complexity Low_complexity 1 224 0 303 245 29 29 chr21 31385395 31385497 -13522073 - L2 LINE L2 -165 3107 3006 183 305 119 0 chr21 31385568 31385627 -13521943 - L2 LINE L2 -2 3270 3205 914 196 0 6 chr21 31386085 31386264 -13521306 - AluSg/x SINE Alu -3 307 130 1815 147 31 0 chr21 31386275 31386568 -13521002 - AluSx SINE Alu -10 302 1 348 87 0 43 chr21 31387460 31387529 -13520041 + (TCC)n Simple_repeat Simple_repeat 3 68 0 205 67 33 0 chr21 31387531 31387561 -13520009 + (TC)n Simple_repeat Simple_repeat 1 31 0 45 34 0 0 chr21 31387822 31387881 -13519689 + AT_rich Low_complexity Low_complexity 1 59 0 1122 286 74 36 chr21 31388622 31389069 -13518501 + MLT1G1 LTR MaLR 14 477 -118 854 309 73 53 chr21 31389662 31390154 -13517416 - MLT1J LTR MaLR -6 505 4 1306 153 18 13 chr21 31391458 31391686 -13515884 + MSTB LTR MaLR 1 229 -197 1549 133 48 41 chr21 31391686 31391980 -13515590 - AluSx SINE Alu -16 296 1 213 65 0 0 chr21 31391982 31392013 -13515557 + (TC)n Simple_repeat Simple_repeat 2 32 0 1376 157 22 5 chr21 31392013 31392236 -13515334 + MSTB LTR MaLR 200 426 0 252 346 0 39 chr21 31393190 31393317 -13514253 - L2 LINE L2 -501 2813 2692 255 220 90 0 chr21 31393431 31393511 -13514059 + MIR SINE MIR 57 150 -60 344 165 60 30 chr21 31393778 31393911 -13513659 + (TA)n Simple_repeat Simple_repeat 1 137 0 225 0 0 0 chr21 31393932 31393957 -13513613 + (TG)n Simple_repeat Simple_repeat 1 25 0 869 266 142 58 chr21 31393961 31394495 -13513075 + MLT1G1 LTR MaLR 17 595 0 183 129 0 0 chr21 31395581 31395612 -13511958 + (T)n Simple_repeat Simple_repeat 1 31 0 1482 172 36 10 chr21 31395904 31396206 -13511364 - AluJb SINE Alu 0 312 3 2207 93 0 28 chr21 31396210 31396567 -13511003 - AluSq SINE Alu 0 348 1 386 373 0 0 chr21 31396595 31396748 -13510822 + MIR SINE MIR 108 260 -2 1047 235 47 13 chr21 31396748 31397046 -13510524 + MLT1C LTR MaLR 7 314 -153 795 169 53 6 chr21 31397167 31397340 -13510230 + MLT1C LTR MaLR 303 467 0 1958 127 0 0 chr21 31397620 31397903 -13509667 + AluSx SINE Alu 1 283 -29 227 200 0 0 chr21 31397928 31397978 -13509592 + (TA)n Simple_repeat Simple_repeat 2 51 0 370 361 55 48 chr21 31398180 31398579 -13508991 - L2 LINE L2 -359 2955 2554 281 299 34 8 chr21 31398604 31398721 -13508849 - LTR16C LTR ERVL 0 491 372 796 159 0 8 chr21 31398728 31398860 -13508710 + AluJo SINE Alu 6 136 -176 287 284 39 16 chr21 31398877 31399004 -13508566 - LTR16C LTR ERVL -114 377 248 1759 137 10 13 chr21 31399239 31399539 -13508031 + AluJo SINE Alu 1 299 -13 228 161 97 32 chr21 31400348 31400410 -13507160 - L1ME LINE L1 -510 5660 5595 369 246 54 109 chr21 31400488 31400764 -13506806 + L2 LINE L2 2925 3185 -87 353 275 51 3 chr21 31400821 31400970 -13506600 + HsTC2 DNA Tc2 26 1900 0 313 259 98 0 chr21 31401251 31401363 -13506207 + LTR16C LTR ERVL 367 489 -2 344 221 70 0 chr21 31402527 31402613 -13504957 + L2 LINE L2 3221 3312 -1 523 254 148 5 chr21 31402782 31402999 -13504571 + L1MC5 LINE L1 7680 7927 -34 2305 73 0 3 chr21 31403524 31403826 -13503744 + AluSc SINE Alu 1 301 -8 1687 157 0 11 chr21 31404443 31404730 -13502840 + AluJb SINE Alu 1 284 -28 279 215 0 0 chr21 31404733 31404798 -13502772 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 326 346 15 8 chr21 31404906 31405036 -13502534 - MIR SINE MIR -59 203 73 1045 173 12 6 chr21 31405256 31405454 -13502116 - L1MC/D LINE L1 -571 5741 5566 3063 119 35 20 chr21 31405457 31405968 -13501602 + L1MA9 LINE L1 5791 6309 -3 1359 239 95 57 chr21 31406150 31406783 -13500787 + L2 LINE L2 2393 3037 -276 2281 138 75 39 chr21 31406783 31406964 -13500606 + MSTA LTR MaLR 2 175 -253 2458 49 0 0 chr21 31406964 31407269 -13500301 + AluY SINE Alu 1 305 -6 2281 138 75 39 chr21 31407269 31407499 -13500071 + MSTA LTR MaLR 175 428 0 1359 239 95 57 chr21 31407499 31407615 -13499955 + L2 LINE L2 3037 3147 -166 757 262 44 76 chr21 31407675 31408239 -13499331 + L1MC5 LINE L1 7238 7783 -178 831 173 12 69 chr21 31408241 31408545 -13499025 + AluJo SINE Alu 1 312 0 690 179 91 1 chr21 31408561 31408707 -13498863 - L1ME1 LINE L1 -2 6332 6017 182 350 120 17 chr21 31408792 31408909 -13498661 - L2 LINE L2 -928 2386 2258 351 168 29 0 chr21 31408909 31408981 -13498589 - LTR16A1 LTR ERVL 0 473 390 2208 114 0 0 chr21 31409031 31409338 -13498232 + AluSx SINE Alu 1 307 -5 466 273 110 33 chr21 31409427 31409727 -13497843 + L2 LINE L2 2416 2738 -576 639 130 83 9 chr21 31409728 31409836 -13497734 + L1M4 LINE L1 5564 5679 -499 473 168 21 21 chr21 31409837 31409932 -13497638 - MSTC LTR MaLR -333 95 1 1129 118 0 0 chr21 31410016 31410185 -13497385 + L1PBa LINE L1 1 169 -6694 1495 167 68 15 chr21 31410188 31410512 -13497058 + MLT1A1 LTR MaLR 17 357 -8 382 248 41 48 chr21 31410976 31411121 -13496449 - Charlie8 DNA MER1_type -1926 491 348 555 75 0 97 chr21 31411131 31411224 -13496346 + L1PB1 LINE L1 5708 5791 -360 224 148 37 12 chr21 31411226 31411307 -13496263 + (TA)n Simple_repeat Simple_repeat 2 84 0 2289 93 0 0 chr21 31411323 31411625 -13495945 + L1PB1 LINE L1 5783 6084 -67 31 68 0 0 chr21 31411639 31411698 -13495872 + AT_rich Low_complexity Low_complexity 1 59 0 946 263 105 33 chr21 31411803 31412202 -13495368 + LTR16A LTR ERVL 16 443 -7 243 210 0 99 chr21 31412275 31412331 -13495239 - Charlie8 DNA MER1_type -2256 161 113 1641 155 0 51 chr21 31412331 31412655 -13494915 - AluJo SINE Alu 0 309 1 243 210 0 99 chr21 31412655 31412678 -13494892 - Charlie8 DNA MER1_type -2304 113 89 274 224 0 0 chr21 31413750 31413799 -13493771 + L2 LINE L2 3265 3313 0 355 284 111 87 chr21 31413969 31414427 -13493143 + L2 LINE L2 2804 3272 0 1705 124 7 29 chr21 31414563 31414837 -13492733 + AluSx SINE Alu 25 292 -20 237 226 20 108 chr21 31414838 31414940 -13492630 - LTR67 LTR ERVL -27 530 438 559 250 64 11 chr21 31414952 31415140 -13492430 + MLT1G1 LTR MaLR 1 198 -369 404 164 9 0 chr21 31415142 31415252 -13492318 + CT-rich Low_complexity Low_complexity 2 112 0 1255 259 102 3 chr21 31415252 31415596 -13491974 + MLT1G1 LTR MaLR 218 595 0 602 285 17 11 chr21 31415828 31416007 -13491563 + MIR SINE MIR 62 241 -21 367 193 31 180 chr21 31416118 31416279 -13491291 + L2 LINE L2 3136 3272 0 509 93 0 70 chr21 31417010 31417096 -13490474 + MADE1 DNA Mariner 1 80 0 218 56 28 0 chr21 31417164 31417200 -13490370 + (TA)n Simple_repeat Simple_repeat 1 37 0 330 279 58 0 chr21 31417203 31417289 -13490281 - L1MC4 LINE L1 -1338 6704 6614 * 403 275 22 0 chr21 31417224 31417315 -13490255 + L1MC4 LINE L1 6613 6705 -1337 216 204 0 0 chr21 31417315 31417359 -13490211 + (TA)n Simple_repeat Simple_repeat 2 45 0 443 114 0 91 chr21 31418080 31418168 -13489402 - MADE1 DNA Mariner 0 80 1 1951 121 0 7 chr21 31418437 31418727 -13488843 - AluJb SINE Alu -16 296 9 384 262 49 12 chr21 31420785 31420949 -13486621 + L1ME4a LINE L1 5952 6121 0 21 89 0 0 chr21 31421045 31421101 -13486469 + AT_rich Low_complexity Low_complexity 1 56 0 1161 112 0 0 chr21 31421211 31421778 -13485792 + (TTGG)n Simple_repeat Simple_repeat 1 567 0 1186 154 45 28 chr21 31422253 31422500 -13485070 + L1MA9 LINE L1 6057 6307 -5 2003 128 0 3 chr21 31422812 31423177 -13484393 + AluSx SINE Alu 1 364 0 1887 141 3 3 chr21 31423508 31423805 -13483765 + AluSx SINE Alu 1 297 -15 466 128 21 43 chr21 31424344 31424438 -13483132 + MER53 DNA DNA 24 115 -74 2284 90 3 0 chr21 31424526 31424836 -13482734 + AluSx SINE Alu 1 311 -1 373 198 49 0 chr21 31424853 31424934 -13482636 - MER53 DNA DNA -104 85 1 441 281 259 4 chr21 31424980 31425254 -13482316 + L2 LINE L2 2970 3313 0 359 225 0 0 chr21 31425410 31425481 -13482089 - MER5A DNA MER1_type -87 102 32 1958 144 3 3 chr21 31425501 31425813 -13481757 + AluSx SINE Alu 1 312 0 471 329 25 13 chr21 31426901 31427059 -13480511 + MIR3 SINE MIR 43 202 -6 341 259 32 57 chr21 31427596 31427754 -13479816 - MIR SINE MIR -10 252 99 2007 146 63 17 chr21 31430083 31430433 -13477137 - MLT1B LTR MaLR -1 389 24 2046 114 3 19 chr21 31431555 31431872 -13475698 - AluJo SINE Alu 0 312 1 840 253 37 33 chr21 31432638 31432883 -13474687 + MIR SINE MIR 9 254 -8 256 133 48 29 chr21 31433155 31433260 -13474310 + (CA)n Simple_repeat Simple_repeat 1 107 0 504 243 77 33 chr21 31433296 31433477 -13474093 + MER112 DNA MER1_type 67 255 -5 186 43 0 0 chr21 31433899 31433922 -13473648 + (ATAGG)n Simple_repeat Simple_repeat 3 25 0 288 70 0 0 chr21 31433955 31433998 -13473572 + (TG)n Simple_repeat Simple_repeat 2 44 0 237 250 60 24 chr21 31434379 31434463 -13473107 - MARNA DNA Mariner -118 468 382 315 0 0 0 chr21 31434526 31434561 -13473009 + (A)n Simple_repeat Simple_repeat 1 35 0 1753 146 0 4 chr21 31434721 31434996 -13472574 - AluJb SINE Alu -38 274 1 271 219 139 51 chr21 31435192 31435329 -13472241 + L2 LINE L2 1949 2097 -1217 1258 54 243 0 chr21 31435370 31435452 -13472118 - MER30 DNA MER1_type 0 230 169 441 0 0 0 chr21 31435452 31435501 -13472069 + (TG)n Simple_repeat Simple_repeat 2 50 0 1258 54 243 0 chr21 31435501 31435603 -13471967 - MER30 DNA MER1_type -61 169 1 320 263 224 22 chr21 31435901 31436080 -13471490 + L2 LINE L2 2248 2462 -852 464 149 27 0 chr21 31436094 31436167 -13471403 + MER2 DNA MER2_type 9 83 -262 477 111 12 25 chr21 31436167 31436248 -13471322 + MADE1 DNA Mariner 1 80 0 * 973 152 102 51 chr21 31436248 31436298 -13471272 + MER2 DNA MER2_type 82 128 -217 2299 92 0 0 chr21 31436298 31436592 -13470978 - AluSc SINE Alu -15 294 1 973 152 102 51 chr21 31436592 31436792 -13470778 + MER2 DNA MER2_type 128 345 0 613 297 74 66 chr21 31436799 31437592 -13469978 + L2 LINE L2 2481 3261 -11 552 264 82 73 chr21 31438326 31438973 -13468597 + HAL1 LINE L1 1009 1661 -846 1927 152 0 0 chr21 31439087 31439384 -13468186 + AluSx SINE Alu 1 297 -15 482 222 48 24 chr21 31439483 31439609 -13467961 + MER94 DNA DNA 1 129 -5 305 292 29 15 chr21 31439689 31439826 -13467744 + L1M4 LINE L1 2478 2616 -3530 2374 74 3 0 chr21 31439881 31440191 -13467379 + AluY SINE Alu 1 311 0 437 255 92 39 chr21 31440191 31440348 -13467222 + L1ME1 LINE L1 5605 5786 -380 1843 201 76 54 chr21 31440348 31440955 -13466615 - MLT1E3 LTR MaLR 0 624 5 437 255 92 39 chr21 31440955 31441075 -13466495 + L1ME1 LINE L1 5786 5898 -268 1844 140 3 22 chr21 31441375 31441690 -13465880 + AluJb SINE Alu 4 312 0 550 133 0 31 chr21 31442021 31442119 -13465451 + FLAM_C SINE Alu 34 128 -15 2059 139 50 90 chr21 31442768 31443191 -13464379 - MLT2D LTR ERVL -8 406 1 452 317 107 33 chr21 31443195 31443495 -13464075 + L2 LINE L2 2401 2722 -592 879 218 50 5 chr21 31443513 31443715 -13463855 - MER20B DNA MER1_type -273 510 300 1523 198 76 12 chr21 31443720 31444063 -13463507 - MLT1A2 LTR MaLR 0 374 10 781 246 27 77 chr21 31444076 31444336 -13463234 - MER20B DNA MER1_type -509 274 28 2054 133 13 3 chr21 31444560 31444869 -13462701 - AluSx SINE Alu 0 312 1 530 165 198 0 chr21 31445960 31446081 -13461489 + MER46A DNA MER2_type 2 146 -90 2591 90 12 71 chr21 31446670 31447277 -13460293 - MER4A LTR ERV1 0 664 25 2260 160 7 34 chr21 31447277 31447690 -13459880 - MER57A LTR ERV1 0 403 2 864 62 9 0 chr21 31447690 31447802 -13459768 + MER57-int LTR ERV1 7424 7536 -1 790 196 30 18 chr21 31447809 31447977 -13459593 + L1MC2 LINE L1 6167 6336 -8 182 231 77 46 chr21 31447985 31448115 -13459455 + L2 LINE L2 1699 1832 -1482 1552 171 66 25 chr21 31448115 31448555 -13459015 - MLT1D LTR MaLR 0 505 2 639 291 169 6 chr21 31448569 31448930 -13458640 + L2 LINE L2 1868 2287 -1027 1948 167 0 7 chr21 31448963 31449268 -13458302 - AluJb SINE Alu -9 303 1 1228 213 143 3 chr21 31449327 31449655 -13457915 - L1MC4 LINE L1 -142 7900 7527 232 301 14 63 chr21 31449711 31449804 -13457766 - L2 LINE L2 -1054 2260 2175 2382 104 0 0 chr21 31449804 31450111 -13457459 + AluSx SINE Alu 1 307 -5 232 301 14 63 chr21 31450111 31450160 -13457410 - L2 LINE L2 -1139 2175 2125 808 256 29 13 chr21 31450166 31450404 -13457166 - L1MC4 LINE L1 -562 7480 7239 6700 230 26 16 chr21 31450443 31452145 -13455425 - L1MEc LINE L1 -926 5638 3920 374 131 0 0 chr21 31452173 31452234 -13455336 - AluSp/q SINE Alu 0 303 243 1090 101 0 0 chr21 31452234 31452373 -13455197 - AluSq/x SINE Alu -173 139 1 1696 224 7 7 chr21 31452382 31452823 -13454747 - L1MEc LINE L1 -2666 3898 3458 3524 107 17 55 chr21 31452829 31452968 -13454602 - MER4B LTR ERV1 0 779 636 2986 9 0 0 chr21 31452968 31453284 -13454286 - AluYb8 SINE Alu -2 316 1 3524 107 17 55 chr21 31453284 31453782 -13453788 - MER4B LTR ERV1 -143 636 1 2576 246 26 12 chr21 31453786 31454526 -13453044 - L1MEc LINE L1 -3113 3451 2702 1172 161 37 37 chr21 31454526 31454743 -13452827 - AluJo SINE Alu -11 301 85 779 149 23 118 chr21 31454757 31455025 -13452545 - L1MEc LINE L1 -3947 2617 2461 2419 79 7 0 chr21 31455025 31455329 -13452241 - AluY SINE Alu -5 306 1 779 149 23 118 chr21 31455329 31455391 -13452179 - L1MEc LINE L1 -4103 2461 2395 2324 143 36 34 chr21 31455391 31455940 -13451630 - MLT2A2 LTR ERVL 0 554 1 868 185 67 16 chr21 31455940 31456170 -13451400 - L1MEc LINE L1 -4165 2423 2181 1851 201 81 59 chr21 31456216 31456630 -13450940 - MER21B LTR ERV1 -333 530 102 2358 67 3 38 chr21 31456630 31456943 -13450627 + AluY SINE Alu 2 303 -8 1851 201 81 59 chr21 31456943 31457036 -13450534 - MER21B LTR ERV1 -761 102 12 3981 216 69 27 chr21 31457047 31458093 -13449477 - L1MEc LINE L1 -4950 1095 6 1574 81 0 89 chr21 31458125 31458371 -13449199 - AluY SINE Alu -2 309 86 302 267 212 7 chr21 31458392 31458538 -13449032 - L1ME4a LINE L1 0 6121 5946 2316 110 0 3 chr21 31459051 31459360 -13448210 - AluSq SINE Alu -5 308 1 396 234 36 9 chr21 31459675 31459786 -13447784 - L2 LINE L2 0 3313 3200 293 206 9 0 chr21 31459869 31459976 -13447594 + C-rich Low_complexity Low_complexity 6 113 0 25 0 0 0 chr21 31459976 31460001 -13447569 + GC_rich Low_complexity Low_complexity 1 25 0 228 158 0 70 chr21 31460373 31460430 -13447140 + C-rich Low_complexity Low_complexity 1 53 0 285 51 0 0 chr21 31461788 31461827 -13445743 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 1787 136 12 4 chr21 31461829 31462087 -13445483 - AluSx SINE Alu -32 280 21 617 209 31 25 chr21 31462119 31462282 -13445288 - MER104 DNA Tc2 -13 167 4 26 0 0 0 chr21 31462619 31462645 -13444925 + AT_rich Low_complexity Low_complexity 1 26 0 626 244 83 67 chr21 31463229 31463709 -13443861 + HAL1b LINE L1 1 488 -860 1558 230 97 44 chr21 31463736 31464251 -13443319 + HAL1b LINE L1 564 1050 -5071 369 0 0 0 chr21 31464251 31464292 -13443278 + (TG)n Simple_repeat Simple_repeat 2 42 0 1558 230 97 44 chr21 31464292 31464519 -13443051 + HAL1b LINE L1 1050 6107 -14 3078 171 56 3 chr21 31464851 31465418 -13442152 - MER41B LTR ERV1 -38 597 1 1097 182 147 21 chr21 31465547 31465712 -13441858 - MER45B DNA AcHobo -543 1038 895 2432 84 0 3 chr21 31465712 31466023 -13441547 + AluY SINE Alu 1 310 -1 1097 182 147 21 chr21 31466023 31466143 -13441427 - MER45B DNA AcHobo -686 895 717 670 271 50 40 chr21 31466258 31466561 -13441009 - MER45C DNA AcHobo -175 778 473 430 263 0 0 chr21 31466815 31466910 -13440660 - MER45C DNA AcHobo -816 137 43 288 0 0 0 chr21 31467146 31467178 -13440392 + (TG)n Simple_repeat Simple_repeat 2 33 0 1987 148 0 10 chr21 31467317 31467615 -13439955 + AluJb SINE Alu 1 295 -17 750 110 9 0 chr21 31467936 31468045 -13439525 + MER83 LTR ERV1 1 110 -338 * 2200 150 20 36 chr21 31468044 31468437 -13439133 + MER83 LTR ERV1 50 436 -12 773 290 36 27 chr21 31468848 31469182 -13438388 + L1MC4a LINE L1 5270 5606 -2202 492 284 70 5 chr21 31469191 31469392 -13438178 + LTR33 LTR ERVL 3 216 -305 230 248 37 37 chr21 31470122 31470226 -13437344 + LTR33 LTR ERVL 341 444 -77 1776 168 40 0 chr21 31470226 31470530 -13437040 + MER7A DNA MER2_type 2 315 -31 2490 131 27 29 chr21 31470530 31470607 -13436963 + L1PB4 LINE L1 5703 5779 -377 1603 142 59 35 chr21 31470607 31470896 -13436674 + AluJb SINE Alu 1 296 -16 2490 131 27 29 chr21 31470896 31471260 -13436310 + L1PB4 LINE L1 5779 6143 -13 229 154 103 0 chr21 31471283 31471322 -13436248 + LTR33 LTR ERVL 477 519 -2 675 260 182 8 chr21 31471325 31471683 -13435887 + L1MC4a LINE L1 5612 6031 -1777 2504 47 14 3 chr21 31472520 31472816 -13434754 + AluY SINE Alu 3 301 -10 447 19 0 0 chr21 31472820 31472872 -13434698 + (TG)n Simple_repeat Simple_repeat 2 53 0 2000 127 11 0 chr21 31472872 31473155 -13434415 - AluSq SINE Alu -27 286 1 2089 119 7 3 chr21 31473156 31473450 -13434120 - AluSx SINE Alu -17 295 1 257 271 159 0 chr21 31474376 31474483 -13433087 + MIR SINE MIR 67 190 -72 210 208 0 0 chr21 31475212 31475265 -13432305 + CT-rich Low_complexity Low_complexity 2 54 0 2582 57 0 0 chr21 31476140 31476437 -13431133 - AluY SINE Alu -14 297 1 533 311 142 8 chr21 31476449 31476716 -13430854 - L2 LINE L2 -20 3293 2991 341 245 49 10 chr21 31477061 31477163 -13430407 + MIR SINE MIR 48 153 -109 2151 139 10 3 chr21 31477307 31477617 -13429953 - AluSx SINE Alu 0 312 1 813 142 0 16 chr21 31478292 31478419 -13429151 + AluJb SINE Alu 1 125 -187 268 210 25 0 chr21 31478419 31478500 -13429070 + GA-rich Low_complexity Low_complexity 2 84 0 446 243 29 0 chr21 31478667 31478770 -13428800 - MER58C DNA MER1_type 0 215 110 2410 102 0 0 chr21 31479129 31479432 -13428138 + AluSx SINE Alu 1 303 -9 585 257 105 17 chr21 31479834 31480150 -13427420 - L2 LINE L2 -281 2991 2626 1731 285 134 15 chr21 31480501 31480604 -13426966 - L2 LINE L2 -688 2626 2537 2251 109 0 3 chr21 31480604 31480906 -13426664 - AluSq SINE Alu -12 301 1 1731 285 134 15 chr21 31480906 31481605 -13425965 - L2 LINE L2 -777 2537 1728 2153 112 0 0 chr21 31481868 31482145 -13425425 + AluSx SINE Alu 1 277 -35 357 24 0 0 chr21 31482145 31482187 -13425383 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 439 297 48 7 chr21 31482232 31482377 -13425193 + MIR SINE MIR 62 212 -50 214 192 58 39 chr21 31482454 31482506 -13425064 + MIR3 SINE MIR 109 161 -47 3793 81 70 0 chr21 31483587 31484105 -13423465 - MER41A LTR ERV1 0 554 1 4486 146 109 18 chr21 31484180 31485008 -13422562 + MER4D LTR ERV1 1 903 0 2259 235 42 81 chr21 31485305 31486059 -13421511 - MER21B LTR ERV1 -124 739 15 709 280 27 35 chr21 31486748 31487009 -13420561 - L2 LINE L2 0 3313 3055 572 194 115 37 chr21 31487009 31487200 -13420370 - LTR16A1 LTR ERVL 0 457 252 584 130 0 11 chr21 31487289 31487381 -13420189 - LTR12 LTR ERV1 -132 582 492 337 181 65 91 chr21 31487381 31487492 -13420078 - LTR30 LTR ERV1 -79 643 375 703 133 22 22 chr21 31487598 31487733 -13419837 - LTR12 LTR ERV1 -480 234 100 226 269 0 0 chr21 31487756 31487808 -13419762 - LTR30 LTR ERV1 -670 52 1 284 229 46 18 chr21 31487811 31487920 -13419650 - LTR16A1 LTR ERVL -345 112 1 228 321 0 0 chr21 31487920 31487976 -13419594 - L2 LINE L2 -254 3059 3004 530 212 44 0 chr21 31487977 31488090 -13419480 + MLT1D LTR MaLR 1 118 -387 2149 129 0 0 chr21 31488090 31488385 -13419185 + AluSx SINE Alu 1 295 -17 1615 177 56 16 chr21 31488385 31488690 -13418880 + MLT1D LTR MaLR 189 505 0 309 284 212 20 chr21 31488690 31489063 -13418507 - L2 LINE L2 -308 3005 2563 523 265 45 0 chr21 31490298 31490430 -13417140 + MER3 DNA MER1_type 72 209 0 242 235 0 0 chr21 31490390 31490441 -13417129 - MER3 DNA MER1_type -122 87 37 * 214 182 0 0 chr21 31490803 31490847 -13416723 + T-rich Low_complexity Low_complexity 1 44 0 572 39 0 13 chr21 31490979 31491057 -13416513 - L1PA2 LINE L1 -2 6153 6077 2228 133 7 0 chr21 31491094 31491403 -13416167 - AluSx SINE Alu 0 312 2 189 0 0 0 chr21 31491405 31491426 -13416144 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 233 255 20 91 chr21 31491428 31491597 -13415973 - L1M4 LINE L1 -355 5829 5675 1855 156 3 7 chr21 31491660 31491949 -13415621 + AluJb SINE Alu 1 288 -24 664 259 31 66 chr21 31492004 31492153 -13415417 + MIR SINE MIR 13 151 -111 2336 80 7 3 chr21 31492153 31492453 -13415117 + AluSg SINE Alu 1 301 -9 664 259 31 66 chr21 31492453 31492562 -13415008 + MIR SINE MIR 151 262 0 871 210 43 0 chr21 31492612 31492774 -13414796 - FAM SINE Alu -3 172 4 2267 118 0 13 chr21 31493911 31494226 -13413344 - AluSx SINE Alu -1 311 1 1602 190 7 14 chr21 31494774 31495064 -13412506 + AluSx SINE Alu 1 288 -24 427 271 124 0 chr21 31495113 31495242 -13412328 + MIR3 SINE MIR 30 174 -34 183 100 0 0 chr21 31496404 31496434 -13411136 + (CCCCG)n Simple_repeat Simple_repeat 4 33 0 313 268 171 53 chr21 31497151 31497450 -13410120 + L2 LINE L2 1915 2248 -1066 208 219 0 0 chr21 31497524 31497565 -13410005 + T-rich Low_complexity Low_complexity 1 180 0 2097 110 0 19 chr21 31497565 31497883 -13409687 - AluSx SINE Alu 0 353 1 338 286 172 54 chr21 31497917 31498249 -13409321 + L2 LINE L2 2237 2607 -707 567 245 141 39 chr21 31499625 31499719 -13407851 - L1MC4 LINE L1 -1 8041 7958 2440 62 0 0 chr21 31499719 31500025 -13407545 - AluY SINE Alu -5 306 1 567 245 141 39 chr21 31500025 31500236 -13407334 - L1MC4 LINE L1 -84 7958 7705 2360 56 20 0 chr21 31500438 31500741 -13406829 - AluY SINE Alu -2 309 1 2054 139 0 0 chr21 31500741 31501042 -13406528 - AluSx SINE Alu -11 301 1 2149 115 3 0 chr21 31501514 31501809 -13405761 + AluSx SINE Alu 1 296 -16 620 148 10 10 chr21 31501897 31501998 -13405572 + FLAM_C SINE Alu 21 121 -22 236 191 21 0 chr21 31502028 31502075 -13405495 + GA-rich Low_complexity Low_complexity 1 48 0 1863 133 10 10 chr21 31502484 31502508 -13405062 - AluJb SINE Alu -4 308 285 198 0 0 0 chr21 31502508 31502530 -13405040 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 1863 133 10 10 chr21 31502530 31502813 -13404757 - AluJb SINE Alu -26 286 1 1419 154 61 0 chr21 31503085 31503306 -13404264 - Tigger3(Golem) DNA MER2_type 0 3029 2794 13372 127 18 15 chr21 31503306 31504236 -13403334 - Tigger1 DNA MER2_type 0 2853 1927 1708 125 62 18 chr21 31504236 31504541 -13403029 - AluSx SINE Alu 0 317 1 13372 127 18 15 chr21 31504541 31505215 -13402355 - Tigger1 DNA MER2_type -926 1927 1257 2245 107 0 7 chr21 31505215 31505523 -13402047 - AluSg SINE Alu -4 306 1 13372 127 18 15 chr21 31505523 31506339 -13401231 - Tigger1 DNA MER2_type -1596 1257 2 296 209 77 22 chr21 31506474 31506565 -13401005 - MER103 DNA DNA -47 119 24 667 96 0 21 chr21 31507322 31507416 -13400154 + AluSg/x SINE Alu 205 296 -16 1391 123 3 187 chr21 31507635 31507728 -13399842 + AluJb SINE Alu 1 109 -203 2043 124 7 10 chr21 31507728 31508034 -13399536 - AluSx SINE Alu -1 311 7 1391 123 3 187 chr21 31508034 31508298 -13399272 + AluJb SINE Alu 109 292 -20 421 235 70 35 chr21 31508650 31508765 -13398805 - MIR SINE MIR -142 120 2 959 281 83 26 chr21 31508995 31509344 -13398226 - L2 LINE L2 0 3313 2945 423 280 58 44 chr21 31509442 31509667 -13397903 + L1M4c LINE L1 2230 2457 -3927 324 234 117 140 chr21 31510403 31510617 -13396953 + MIR SINE MIR 18 226 -36 1506 175 74 37 chr21 31510981 31511306 -13396264 - MLT1A1 LTR MaLR 0 365 29 1047 137 0 12 chr21 31511658 31511826 -13395744 - AluSq SINE Alu -23 290 125 1972 116 7 14 chr21 31512318 31512611 -13394959 + AluSq SINE Alu 1 291 -22 1235 127 246 13 chr21 31512634 31512894 -13394676 - AluSg SINE Alu 0 313 1 279 346 87 34 chr21 31513379 31513700 -13393870 - L3 LINE CR1 -43 1534 1197 2155 127 0 0 chr21 31514082 31514390 -13393180 + AluSq SINE Alu 2 309 -4 1952 158 110 40 chr21 31514614 31514964 -13392606 + MSTA LTR MaLR 1 384 -44 1949 116 24 3 chr21 31514964 31515258 -13392312 - AluSx SINE Alu -12 300 1 1952 158 110 40 chr21 31515258 31515307 -13392263 + MSTA LTR MaLR 384 428 0 206 271 84 65 chr21 31515307 31515414 -13392156 - MIR SINE MIR -149 113 5 223 433 0 0 chr21 31515444 31515548 -13392022 + L3 LINE CR1 470 573 -1004 2765 158 85 60 chr21 31516558 31516680 -13390890 - MER67B LTR ERV1 0 661 544 1472 173 0 8 chr21 31516680 31516940 -13390630 + AluJo SINE Alu 45 302 -10 2765 158 85 60 chr21 31516940 31517410 -13390160 - MER67B LTR ERV1 -117 544 49 1770 151 0 43 chr21 31517410 31517734 -13389836 - AluJb SINE Alu -2 310 1 2765 158 85 60 chr21 31517734 31517785 -13389785 - MER67B LTR ERV1 -612 49 1 276 130 0 0 chr21 31518432 31518478 -13389092 + (CA)n Simple_repeat Simple_repeat 2 47 0 1161 252 28 3 chr21 31518972 31519262 -13388308 - LTR16A LTR ERVL -14 436 140 203 278 44 33 chr21 31519347 31519437 -13388133 + L3 LINE CR1 325 415 -1162 323 102 20 0 chr21 31519847 31519896 -13387674 - MER58 DNA MER1_type 0 2420 2371 2350 77 0 6 chr21 31519898 31520209 -13387361 + AluY SINE Alu 1 309 -2 1013 113 19 19 chr21 31520209 31520368 -13387202 + AluSg/x SINE Alu 134 292 -20 25 0 0 0 chr21 31520368 31520393 -13387177 + AT_rich Low_complexity Low_complexity 1 25 0 329 225 200 0 chr21 31520457 31520537 -13387033 - MER58 DNA MER1_type -242 99 4 277 387 23 13 chr21 31520539 31520849 -13386721 - ERVL LTR ERVL -869 4895 4583 2203 186 19 26 chr21 31520910 31521336 -13386234 - MLT1C LTR MaLR -2 465 41 2235 88 0 0 chr21 31521336 31521633 -13385937 - AluSx SINE Alu -15 297 1 2203 186 19 26 chr21 31521633 31521674 -13385896 - MLT1C LTR MaLR -426 41 1 1298 298 88 38 chr21 31521711 31522851 -13384719 - ERVL LTR ERVL -1232 4422 3162 930 305 60 18 chr21 31522964 31523298 -13384272 - ERVL LTR ERVL -1905 3091 2744 281 325 35 35 chr21 31523322 31523519 -13384051 - LTR16A LTR ERVL -236 214 18 2064 85 50 0 chr21 31523606 31523889 -13383681 + AluSx SINE Alu 1 297 -15 234 307 40 20 chr21 31524143 31524244 -13383326 + L3 LINE CR1 59 161 -1416 330 26 0 0 chr21 31524437 31524476 -13383094 + (TG)n Simple_repeat Simple_repeat 2 40 0 313 200 50 12 chr21 31525068 31525148 -13382422 - Charlie5 DNA MER1_type 0 2624 2542 2194 85 24 0 chr21 31525151 31525446 -13382124 + AluY SINE Alu 1 302 -9 2117 123 0 0 chr21 31525457 31525758 -13381812 + AluSx SINE Alu 1 301 -11 31 0 0 0 chr21 31525792 31525823 -13381747 + AT_rich Low_complexity Low_complexity 1 31 0 2189 102 3 13 chr21 31525831 31526144 -13381426 + AluSx SINE Alu 2 311 -1 2094 101 3 19 chr21 31526734 31527041 -13380529 + AluSx SINE Alu 1 302 -10 275 265 0 44 chr21 31527357 31527425 -13380145 - L2 LINE L2 -1 3271 3207 365 233 78 29 chr21 31527494 31527597 -13379973 + L1MEd LINE L1 891 998 -5121 1647 177 16 16 chr21 31527605 31527915 -13379655 + AluJb SINE Alu 3 312 0 2115 131 84 24 chr21 31527943 31528326 -13379244 - MLT2D LTR ERVL -8 406 1 307 211 87 67 chr21 31528343 31528399 -13379171 - L1M4 LINE L1 -1767 4379 4318 2168 96 0 0 chr21 31528399 31528709 -13378861 + AluSx SINE Alu 1 310 0 307 211 87 67 chr21 31528709 31528755 -13378815 - L1M4 LINE L1 -1828 4318 4274 1297 235 47 116 chr21 31528830 31529366 -13378204 + LTR9 LTR ERV1 114 612 0 640 234 29 6 chr21 31529698 31529869 -13377701 + MER5B DNA MER1_type 4 178 0 2357 84 0 3 chr21 31530225 31530535 -13377035 + AluSq SINE Alu 1 309 -4 711 144 428 0 chr21 31530687 31530867 -13376703 + MLT1A1 LTR MaLR 1 257 -108 635 74 0 0 chr21 31530871 31530952 -13376618 + MER41B LTR ERV1 3 83 -552 288 191 0 29 chr21 31530958 31531026 -13376544 + MLT1A1 LTR MaLR 402 467 0 1115 228 27 0 chr21 31531724 31531948 -13375622 - MIR SINE MIR -4 258 29 946 242 104 42 chr21 31531953 31532288 -13375282 + MLT1E LTR MaLR 15 370 -223 548 254 29 15 chr21 31532424 31532633 -13374937 + LTR16A LTR ERVL 180 453 -4 412 324 125 39 chr21 31532635 31532894 -13374676 - L2 LINE L2 -1415 1899 1664 1520 222 201 37 chr21 31532894 31533414 -13374156 + MER76 LTR ERV 1 631 -57 2148 103 0 0 chr21 31533414 31533704 -13373866 - AluSx SINE Alu -4 308 19 1520 222 201 37 chr21 31533704 31533774 -13373796 + MER76 LTR ERV 631 688 0 412 324 125 39 chr21 31533774 31534076 -13373494 - L2 LINE L2 -1650 1664 1290 1604 168 20 7 chr21 31535179 31535476 -13372094 - AluJb SINE Alu -11 301 1 558 256 100 11 chr21 31535557 31535737 -13371833 - LTR33 LTR ERVL -7 514 319 542 250 42 88 chr21 31535798 31535890 -13371680 - LTR33 LTR ERVL -337 184 104 1966 144 0 0 chr21 31535890 31536195 -13371375 - AluSx SINE Alu -3 309 5 542 250 42 88 chr21 31536195 31536294 -13371276 - LTR33 LTR ERVL -417 104 2 1388 139 49 16 chr21 31536647 31536892 -13370678 - AluJo SINE Alu -59 253 1 836 251 132 63 chr21 31537036 31537214 -13370356 + L2 LINE L2 2708 2872 -441 2083 182 13 52 chr21 31537214 31537675 -13369895 + LTR47B LTR ERVL 1 443 0 836 251 132 63 chr21 31537675 31538040 -13369530 + L2 LINE L2 2872 3300 -13 198 118 0 0 chr21 31538040 31538074 -13369496 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 732 254 26 26 chr21 31538776 31538965 -13368605 + MER5A DNA MER1_type 1 189 0 188 286 0 95 chr21 31539903 31539926 -13367644 + L2 LINE L2 3157 3181 -91 1855 192 24 14 chr21 31539926 31540296 -13367274 + MLT1A2 LTR MaLR 1 374 0 188 286 0 95 chr21 31540296 31540335 -13367235 + L2 LINE L2 3181 3213 -59 25 31 0 0 chr21 31540844 31540876 -13366694 + AT_rich Low_complexity Low_complexity 1 32 0 784 172 6 68 chr21 31540884 31540939 -13366631 + FRAM SINE Alu 1 58 -244 1971 131 0 0 chr21 31540939 31541222 -13366348 + AluSx SINE Alu 1 283 -29 784 172 6 68 chr21 31541222 31541329 -13366241 + FRAM SINE Alu 58 153 -13 375 267 23 58 chr21 31541364 31541536 -13366034 + Charlie7 DNA MER1_type 2447 2612 0 22 0 0 0 chr21 31541971 31541993 -13365577 + AT_rich Low_complexity Low_complexity 1 22 0 564 246 101 22 chr21 31542120 31542397 -13365173 + HAL1 LINE L1 1002 1300 -1207 4285 236 73 30 chr21 31542399 31543206 -13364364 + L1MEc LINE L1 35 920 -5476 2095 142 29 65 chr21 31543206 31543622 -13363948 - MER57A LTR ERV1 -2 401 1 4285 236 73 30 chr21 31543622 31544096 -13363474 + L1MEc LINE L1 920 1372 -5024 230 286 0 48 chr21 31544098 31544182 -13363388 + HAL1 LINE L1 1282 1361 -1146 259 270 162 9 chr21 31544202 31544313 -13363257 - MER76 LTR ERV -59 629 502 * 953 184 13 88 chr21 31544310 31544549 -13363021 - MER76 LTR ERV -467 221 1 526 364 123 22 chr21 31544595 31545476 -13362094 - L2 LINE L2 -1012 2302 1333 695 252 133 0 chr21 31545627 31545853 -13361717 - MIR SINE MIR 0 262 7 221 340 66 0 chr21 31545996 31546102 -13361468 + L2 LINE L2 2928 3040 -232 1585 171 11 7 chr21 31546183 31546463 -13361107 - AluJb SINE Alu -26 286 6 986 264 123 36 chr21 31546725 31547172 -13360398 + Charlie7 DNA MER1_type 1 486 -2126 * 1465 168 223 47 chr21 31547163 31547670 -13359900 + Charlie7 DNA MER1_type 663 1258 -1354 1211 159 56 9 chr21 31547670 31547703 -13359867 + L1MC4 LINE L1 6769 6799 -1243 204 111 0 0 chr21 31547703 31547739 -13359831 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1211 159 56 9 chr21 31547739 31547938 -13359632 + L1MC4 LINE L1 6799 7012 -1030 514 148 11 0 chr21 31547933 31548021 -13359549 + L1MC2 LINE L1 5998 6086 -258 * 2133 197 83 51 chr21 31548038 31548642 -13358928 + MER50 LTR ERV1 26 648 -86 1242 141 100 8 chr21 31548680 31548921 -13358649 + L1MC2 LINE L1 6082 6344 0 1130 226 124 102 chr21 31548923 31548998 -13358572 + L1MC4 LINE L1 7003 7075 -967 2253 96 3 7 chr21 31548998 31549324 -13358246 + AluSp SINE Alu 1 313 0 1130 226 124 102 chr21 31549324 31549859 -13357711 + L1MC4 LINE L1 7075 7627 -415 529 218 60 8 chr21 31549896 31550029 -13357541 + L1MC4 LINE L1 7903 8042 0 1979 145 0 0 chr21 31550039 31550321 -13357249 + AluSx SINE Alu 1 282 -30 978 218 37 61 chr21 31550351 31550645 -13356925 + Charlie7 DNA MER1_type 1251 1537 -1075 870 256 116 3 chr21 31550674 31551010 -13356560 + Charlie7 DNA MER1_type 1938 2311 -301 1864 141 0 4 chr21 31551123 31551400 -13356170 + AluSx SINE Alu 3 278 -34 365 241 30 62 chr21 31551419 31552040 -13355530 + (CATA)n Simple_repeat Simple_repeat 1 601 0 366 198 10 112 chr21 31552045 31552242 -13355328 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 507 99 40 84 chr21 31552303 31553171 -13354399 + (TA)n Simple_repeat Simple_repeat 1 830 0 234 145 16 65 chr21 31553177 31553239 -13354331 - L1MCa LINE L1 -4362 2064 2006 518 138 0 69 chr21 31553245 31553434 -13354136 + (TA)n Simple_repeat Simple_repeat 2 177 0 211 124 0 171 chr21 31553659 31553764 -13353806 + (GAATG)n Simple_repeat Simple_repeat 2 88 0 310 130 0 202 chr21 31553782 31554005 -13353565 + (GGATG)n Simple_repeat Simple_repeat 2 179 0 1612 130 248 3 chr21 31555663 31555986 -13351584 - LTR34 LTR ERV1 -13 686 285 753 80 0 0 chr21 31555986 31556086 -13351484 - MER4B LTR ERV1 -509 101 2 253 326 0 0 chr21 31556175 31556270 -13351300 + L1ME LINE L1 5590 5684 -437 2082 109 42 0 chr21 31556280 31556565 -13351005 - AluSx SINE Alu -12 300 4 1717 144 0 48 chr21 31556580 31556872 -13350698 - LTR34 LTR ERV1 -421 278 1 701 288 68 8 chr21 31557401 31557637 -13349933 - MIR SINE MIR -12 250 1 2384 172 74 48 chr21 31557718 31558567 -13349003 - MER4B LTR ERV1 0 610 2 261 62 0 0 chr21 31558611 31558643 -13348927 + L1M4c LINE L1 635 666 -5718 292 296 41 0 chr21 31558682 31558780 -13348790 + L1ME LINE L1 5590 5691 -430 25 108 0 0 chr21 31558940 31559042 -13348528 + AT_rich Low_complexity Low_complexity 1 102 0 3643 162 58 16 chr21 31559952 31560642 -13346928 + L1M4c LINE L1 20 738 -5646 * 11888 191 59 9 chr21 31560637 31563683 -13343887 + L1M2a LINE L1 1 3236 -3931 2522 18 0 0 chr21 31563683 31563958 -13343612 - AluY SINE Alu -3 308 34 11888 191 59 9 chr21 31563958 31564344 -13343226 + L1M2a LINE L1 3236 3602 -3565 1695 163 143 11 chr21 31564334 31564683 -13342887 + L1M4c LINE L1 1375 1769 -4615 * 272 150 0 0 chr21 31565168 31565208 -13342362 + Tigger5 DNA MER2_type 2283 2322 -1 6249 12 3 1 chr21 31565993 31566662 -13340908 - L1PA3 LINE L1 0 6155 5486 2168 133 3 0 chr21 31566816 31567118 -13340452 - AluSx SINE Alu -9 303 1 1088 161 11 0 chr21 31567142 31567316 -13340254 + AluSg/x SINE Alu 132 307 -3 455 185 22 34 chr21 31567687 31567865 -13339705 + (TA)n Simple_repeat Simple_repeat 1 176 0 1146 159 39 18 chr21 31568062 31568319 -13339251 + L1M1 LINE L1 5219 5489 -755 2256 95 10 7 chr21 31568319 31568615 -13338955 + AluSx SINE Alu 1 297 -15 1146 159 39 18 chr21 31568615 31568629 -13338941 + L1M1 LINE L1 5489 5501 -743 2353 88 7 0 chr21 31568802 31569110 -13338460 - AluSp SINE Alu -3 310 1 22 0 0 0 chr21 31569579 31569601 -13337969 + AT_rich Low_complexity Low_complexity 1 22 0 2313 111 0 19 chr21 31569708 31570023 -13337547 + AluSx SINE Alu 1 309 -3 929 196 5 71 chr21 31570425 31570649 -13336921 - AluJo SINE Alu -17 295 87 236 362 43 26 chr21 31570660 31570776 -13336794 - MIR SINE MIR -75 133 16 813 274 172 35 chr21 31571338 31571420 -13336150 + L2 LINE L2 1691 1760 -1554 1487 203 88 70 chr21 31571420 31571748 -13335822 + Charlie1b DNA MER1_type 2 323 -2438 2188 130 3 0 chr21 31571748 31572049 -13335521 - AluSp SINE Alu -11 302 1 1487 203 88 70 chr21 31572049 31572195 -13335375 + Charlie1b DNA MER1_type 323 488 -2273 1993 154 0 7 chr21 31572195 31572487 -13335083 + AluJb SINE Alu 1 290 -22 1487 203 88 70 chr21 31572487 31572524 -13335046 + Charlie1b DNA MER1_type 488 523 0 813 274 172 35 chr21 31572524 31572631 -13334939 + L2 LINE L2 1760 1851 -1463 2532 38 0 41 chr21 31572631 31572945 -13334625 + AluY SINE Alu 1 301 -10 813 274 172 35 chr21 31572945 31573236 -13334334 + L2 LINE L2 1851 2238 -1076 264 194 45 30 chr21 31573214 31573281 -13334289 + L2 LINE L2 3241 3308 -5 * 1813 140 17 30 chr21 31573942 31574242 -13333328 + AluSx SINE Alu 1 296 -16 2241 105 0 0 chr21 31574819 31575156 -13332414 - AluSx SINE Alu 0 312 1 550 298 45 39 chr21 31575518 31575696 -13331874 + MIR3 SINE MIR 5 183 -25 923 184 6 6 chr21 31576007 31576165 -13331405 + FAM SINE Alu 1 158 -17 794 216 190 9 chr21 31576941 31577173 -13330397 - MLT1E1 LTR MaLR -2 652 379 2367 101 0 0 chr21 31577201 31577499 -13330071 - AluSx SINE Alu -14 298 1 954 128 0 0 chr21 31577503 31577636 -13329934 - AluSq/x SINE Alu -179 133 1 1568 148 44 8 chr21 31577637 31577887 -13329683 - MLT1E1 LTR MaLR -389 265 7 197 212 136 15 chr21 31578152 31578218 -13329352 + MIR SINE MIR 48 121 -141 1879 197 62 31 chr21 31578279 31578622 -13328948 + MER63B DNA MER1_type 1 361 -701 1963 106 0 15 chr21 31578622 31578896 -13328674 + AluSx SINE Alu 34 303 -9 1879 197 62 31 chr21 31578896 31578973 -13328597 + MER63B DNA MER1_type 361 434 -2 324 310 115 0 chr21 31579024 31579137 -13328433 + L2 LINE L2 3180 3305 -8 1710 147 49 18 chr21 31579718 31580004 -13327566 + AluJb SINE Alu 1 295 -17 292 259 60 60 chr21 31580083 31580199 -13327371 + MER5A DNA MER1_type 45 160 -29 953 178 41 0 chr21 31580215 31580384 -13327186 - MER20 DNA MER1_type -14 205 30 522 196 36 107 chr21 31580386 31580611 -13326959 + MER106A DNA MER1_type 28 236 0 422 306 39 57 chr21 31580891 31581120 -13326450 + MIR SINE MIR 32 256 -6 297 256 37 0 chr21 31581168 31581250 -13326320 - MIR SINE MIR -10 252 168 1216 173 0 5 chr21 31581602 31581833 -13325737 - AluJb SINE Alu 0 316 87 1148 133 6 17 chr21 31581876 31582056 -13325514 - AluJo SINE Alu -125 187 10 415 271 90 14 chr21 31582094 31582238 -13325332 - MIR SINE MIR -98 164 10 1803 120 16 8 chr21 31582412 31582705 -13324865 + AluSx SINE Alu 23 317 0 22 56 0 0 chr21 31583241 31583277 -13324293 + AT_rich Low_complexity Low_complexity 1 36 0 2266 88 3 0 chr21 31584130 31584415 -13323155 + AluSx SINE Alu 1 286 -26 351 194 30 0 chr21 31584465 31584532 -13323038 + Tigger5 DNA MER2_type 2255 2323 0 23 0 0 0 chr21 31585331 31585354 -13322216 + AT_rich Low_complexity Low_complexity 1 23 0 2246 88 11 0 chr21 31585807 31586092 -13321478 + AluSc SINE Alu 3 290 -19 2098 91 14 20 chr21 31587600 31587897 -13319673 - AluSg SINE Alu -15 295 1 28 61 0 0 chr21 31588513 31588562 -13319008 + AT_rich Low_complexity Low_complexity 1 49 0 761 154 0 41 chr21 31588786 31588909 -13318661 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr21 31588909 31588930 -13318640 + AT_rich Low_complexity Low_complexity 1 21 0 336 221 201 60 chr21 31589048 31589197 -13318373 + L2 LINE L2 3143 3312 -1 1752 71 0 0 chr21 31590230 31590441 -13317129 + AluSg/x SINE Alu 85 295 -17 1547 91 0 0 chr21 31591704 31591902 -13315668 - AluSq SINE Alu -3 310 113 2628 171 84 16 chr21 31591902 31592214 -13315356 + MER21B LTR ERV1 331 691 -172 2292 210 37 64 chr21 31592214 31592843 -13314727 - LTR9 LTR ERV1 0 612 1 2628 171 84 16 chr21 31592843 31593028 -13314542 + MER21B LTR ERV1 691 862 -1 963 175 26 0 chr21 31593033 31593222 -13314348 + L1MB2 LINE L1 5045 5238 -908 1613 189 77 31 chr21 31593240 31593305 -13314265 + L1MB2 LINE L1 5769 5830 -341 2754 32 0 0 chr21 31593305 31593615 -13313955 + AluY SINE Alu 1 310 -1 1613 189 77 31 chr21 31593615 31593899 -13313671 + L1MB2 LINE L1 5830 6134 -37 841 178 8 0 chr21 31593899 31594028 -13313542 - FLAM_A SINE Alu -3 130 1 2051 129 0 0 chr21 31594230 31594510 -13313060 + AluSx SINE Alu 1 280 -32 1838 219 108 92 chr21 31594672 31594913 -13312657 - Charlie2 DNA MER1_type -16 2846 2610 1781 158 7 21 chr21 31594913 31595204 -13312366 + AluJo SINE Alu 1 287 -25 1838 219 108 92 chr21 31595204 31595440 -13312130 - Charlie2 DNA MER1_type -252 2610 2379 2292 105 3 0 chr21 31595440 31595744 -13311826 + AluSg SINE Alu 1 305 -5 1838 219 108 92 chr21 31595744 31595859 -13311711 - Charlie2 DNA MER1_type -483 2379 2267 2050 119 0 7 chr21 31595859 31596171 -13311399 - AluSx SINE Alu 0 310 1 1838 219 108 92 chr21 31596171 31596445 -13311125 - Charlie2 DNA MER1_type -595 2267 1963 2873 97 81 32 chr21 31596451 31596894 -13310676 + MER4C LTR ERV1 1 465 0 2010 142 6 3 chr21 31596913 31597224 -13310346 + AluJb SINE Alu 1 312 0 1641 183 49 74 chr21 31597314 31597782 -13309788 + LTR10B LTR ERV1 1 547 0 540 242 64 13 chr21 31597787 31597944 -13309626 + L1MC5 LINE L1 7320 7484 -477 2232 99 3 0 chr21 31597956 31598307 -13309263 - AluSx SINE Alu 0 352 1 180 0 0 0 chr21 31598326 31598346 -13309224 + (TG)n Simple_repeat Simple_repeat 1 20 0 2546 204 28 58 chr21 31598383 31599035 -13308535 + LTR27 LTR ERV1 3 634 -2 2245 123 3 0 chr21 31599068 31599368 -13308202 - AluSx SINE Alu -11 301 1 351 223 107 50 chr21 31599374 31599495 -13308075 - FLAM_C SINE Alu 0 133 6 380 258 121 30 chr21 31599515 31599647 -13307923 + L1MC5 LINE L1 7648 7791 -170 281 316 65 14 chr21 31599692 31599831 -13307739 + LTR16A LTR ERVL 43 188 -262 534 200 24 0 chr21 31599883 31600008 -13307562 + LTR16A LTR ERVL 320 447 -3 332 227 36 73 chr21 31600010 31600055 -13307515 + L1MC5 LINE L1 7808 7853 -108 1807 213 105 49 chr21 31600055 31600646 -13306924 + MLT1E3 LTR MaLR 1 624 0 332 227 36 73 chr21 31600646 31600710 -13306860 + L1MC5 LINE L1 7853 7913 -48 2577 154 101 28 chr21 31600714 31601192 -13306378 + LTR49 LTR ERV1 1 525 -70 2052 140 0 33 chr21 31601192 31601499 -13306071 - AluSx SINE Alu -15 297 1 2577 154 101 28 chr21 31601499 31601565 -13306005 + LTR49 LTR ERV1 525 585 -10 348 257 14 35 chr21 31601708 31601852 -13305718 - Charlie2 DNA MER1_type -868 1994 1854 551 273 77 18 chr21 31601852 31602072 -13305498 - Charlie2 DNA MER1_type -2553 309 77 687 146 174 51 chr21 31602075 31602253 -13305317 + MER20 DNA MER1_type 16 215 -4 2492 68 0 16 chr21 31602322 31602630 -13304940 - AluY SINE Alu -8 303 1 2445 50 0 0 chr21 31602943 31603222 -13304348 + AluY SINE Alu 21 299 -12 2336 82 14 0 chr21 31603229 31603521 -13304049 + AluSc SINE Alu 1 296 -13 393 261 22 11 chr21 31604863 31604955 -13302615 + MIR SINE MIR 28 120 -142 938 134 0 22 chr21 31605141 31605275 -13302295 - FLAM_C SINE Alu -2 131 1 705 251 39 17 chr21 31605337 31605568 -13302002 + L2 LINE L2 2361 2596 -718 548 186 0 0 chr21 31605582 31605684 -13301886 - MLT2C2 LTR ERVL -362 102 1 1816 107 149 0 chr21 31605796 31606058 -13301512 + AluSx SINE Alu 1 301 -11 326 277 23 0 chr21 31606142 31606272 -13301298 + L1MB7 LINE L1 6049 6181 -3 33 25 0 0 chr21 31606449 31606489 -13301081 + AT_rich Low_complexity Low_complexity 1 40 0 1991 141 0 0 chr21 31606489 31606812 -13300758 + AluSx SINE Alu 1 323 0 188 323 16 0 chr21 31606880 31606942 -13300628 - L2 LINE L2 -1366 1948 1886 1992 141 10 0 chr21 31608121 31608419 -13299151 - AluSx SINE Alu -11 301 1 736 212 49 35 chr21 31608482 31608685 -13298885 + Charlie1b DNA MER1_type 49 254 -269 2295 94 0 3 chr21 31608710 31608998 -13298572 + AluSq SINE Alu 1 287 -26 1501 199 16 6 chr21 31609089 31609410 -13298160 - L1MB7 LINE L1 -155 6029 5706 298 111 56 14 chr21 31609464 31609536 -13298034 + Charlie1b DNA MER1_type 284 358 -165 1795 85 0 99 chr21 31609537 31609819 -13297751 - AluSx SINE Alu -13 299 46 815 154 148 0 chr21 31609820 31609989 -13297581 + MER34C LTR ERV1 11 204 -381 1930 138 16 23 chr21 31610186 31610490 -13297080 + AluSx SINE Alu 1 302 -10 289 208 119 107 chr21 31610508 31610676 -13296894 + LTR48 LTR ERV1 613 782 -5 1440 215 16 6 chr21 31611094 31611415 -13296155 - L1MB7 LINE L1 -155 6029 5706 1929 134 9 47 chr21 31611427 31611747 -13295823 - AluJb SINE Alu -4 308 1 2346 104 13 7 chr21 31612034 31612342 -13295228 + AluSx SINE Alu 1 310 -2 415 146 11 11 chr21 31612364 31612453 -13295117 + A-rich Low_complexity Low_complexity 4 92 0 1773 163 33 13 chr21 31612776 31613082 -13294488 + AluJb SINE Alu 1 312 0 466 238 10 0 chr21 31613259 31613360 -13294210 - MER81 DNA DNA -1 113 12 1741 159 3 13 chr21 31613679 31613980 -13293590 - L1MB5 LINE L1 -8 6166 5869 1780 147 0 80 chr21 31613983 31614310 -13293260 - AluJb SINE Alu -11 301 1 2125 138 0 19 chr21 31614335 31614654 -13292916 - AluSq SINE Alu 0 313 1 1484 171 44 22 chr21 31615588 31615863 -13291707 + AluJo SINE Alu 11 291 -21 2029 81 60 28 chr21 31615930 31616213 -13291357 + AluSp SINE Alu 1 292 -21 358 292 54 0 chr21 31616379 31616509 -13291061 + LTR67 LTR ERVL 402 538 -19 241 196 0 20 chr21 31616657 31616708 -13290862 - MER46C DNA MER2_type -3 335 286 731 115 0 77 chr21 31616712 31616842 -13290728 - FLAM_C SINE Alu -9 134 15 570 252 156 5 chr21 31616860 31617078 -13290492 - MER46C DNA MER2_type -67 271 21 1938 143 11 0 chr21 31617132 31617441 -13290129 - AluSx SINE Alu 0 312 1 2500 62 0 0 chr21 31617699 31618006 -13289564 - AluY SINE Alu -4 307 1 446 219 95 7 chr21 31618234 31618371 -13289199 - L1MA10 LINE L1 -9 6325 6177 700 217 0 36 chr21 31618551 31618689 -13288881 + FLAM_A SINE Alu 1 133 0 395 244 12 0 chr21 31618746 31618828 -13288742 + L2 LINE L2 3230 3312 -1 1806 138 0 38 chr21 31618877 31619022 -13288548 - AluJo SINE Alu -34 278 148 2411 98 3 0 chr21 31619022 31619327 -13288243 - AluSp SINE Alu -7 306 1 1806 138 0 38 chr21 31619327 31619470 -13288100 - AluJo SINE Alu -164 148 1 419 239 120 76 chr21 31620134 31620318 -13287252 + L2 LINE L2 3121 3312 -1 213 121 0 0 chr21 31620324 31620357 -13287213 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 253 253 42 11 chr21 31620994 31621089 -13286481 + L1ME4a LINE L1 6004 6101 -20 2348 103 7 0 chr21 31621089 31621389 -13286181 - AluSx SINE Alu -10 302 1 1671 187 19 13 chr21 31621442 31621752 -13285818 + AluJo SINE Alu 1 312 0 2386 104 3 0 chr21 31621920 31622228 -13285342 - AluSq SINE Alu -4 309 1 240 35 0 0 chr21 31622771 31622800 -13284770 + (TG)n Simple_repeat Simple_repeat 1 29 0 1544 192 31 43 chr21 31622922 31623214 -13284356 + MLT1D LTR MaLR 1 288 -217 2039 110 0 45 chr21 31623214 31623524 -13284046 + AluSx SINE Alu 1 296 -16 1544 192 31 43 chr21 31623524 31623622 -13283948 + MLT1D LTR MaLR 288 386 -119 1146 207 0 4 chr21 31623627 31623854 -13283716 - AluJb SINE Alu 0 312 87 1885 122 22 7 chr21 31623883 31624154 -13283416 - AluJo SINE Alu -23 289 15 573 168 28 0 chr21 31624158 31624265 -13283305 + MLT1D LTR MaLR 396 505 0 2455 54 3 0 chr21 31624649 31624945 -13282625 - AluY SINE Alu -14 297 1 1776 143 66 0 chr21 31625090 31625376 -13282194 - AluSg SINE Alu -5 305 1 180 176 0 0 chr21 31625429 31625463 -13282107 + (CA)n Simple_repeat Simple_repeat 2 35 0 246 328 78 31 chr21 31625905 31626033 -13281537 - LTR67 LTR ERVL -421 136 3 2961 86 13 46 chr21 31626254 31626707 -13280863 + MER1A DNA MER1_type 92 529 0 1817 166 3 29 chr21 31626816 31627123 -13280447 - AluJo SINE Alu -13 299 1 2405 100 0 0 chr21 31627488 31627787 -13279783 + AluSx SINE Alu 1 299 -13 230 304 14 0 chr21 31628614 31628683 -13278887 + MIR SINE MIR 28 97 -165 618 285 195 28 chr21 31628686 31628731 -13278839 - MLT2F LTR ERVL -4 659 623 438 20 0 0 chr21 31628731 31628782 -13278788 + (TG)n Simple_repeat Simple_repeat 2 52 0 618 285 195 28 chr21 31628782 31629191 -13278379 - MLT2F LTR ERVL -40 623 91 2453 141 28 21 chr21 31629191 31629395 -13278175 + MSTC LTR MaLR 1 202 -226 2178 116 20 0 chr21 31629395 31629698 -13277872 + AluSq SINE Alu 5 313 0 2453 141 28 21 chr21 31629698 31629918 -13277652 + MSTC LTR MaLR 202 428 0 618 285 195 28 chr21 31629918 31630027 -13277543 - MLT2F LTR ERVL -572 91 1 409 180 49 49 chr21 31630261 31630361 -13277209 - MER69 DNA AcHobo -2 2524 2422 2343 119 3 0 chr21 31630361 31630672 -13276898 - AluSx SINE Alu 0 312 1 409 180 49 49 chr21 31630672 31630693 -13276877 - MER69 DNA AcHobo -103 2423 2403 2289 111 3 0 chr21 31630707 31631004 -13276566 - AluSx SINE Alu -14 298 1 2603 149 42 54 chr21 31631008 31631387 -13276183 + LTR38B LTR ERV1 66 438 -172 2241 69 14 0 chr21 31631387 31631719 -13275851 + AluY SINE Alu 1 336 0 2603 149 42 54 chr21 31631719 31631890 -13275680 + LTR38B LTR ERV1 438 610 0 2456 80 3 3 chr21 31632044 31632355 -13275215 - AluSx SINE Alu 0 312 2 544 28 141 0 chr21 31632972 31633043 -13274527 + AluSc SINE Alu 207 287 -22 213 57 38 57 chr21 31633395 31633448 -13274122 + (CGGGGG)n Simple_repeat Simple_repeat 6 57 0 216 246 15 15 chr21 31633619 31633684 -13273886 + (CCG)n Simple_repeat Simple_repeat 2 66 0 1658 153 37 7 chr21 31634503 31634798 -13272772 - AluJb SINE Alu -8 304 1 1959 99 89 3 chr21 31634917 31635199 -13272371 + AluSg SINE Alu 3 308 -2 225 286 33 55 chr21 31635458 31635549 -13272021 + MIR SINE MIR 34 122 -86 293 265 59 18 chr21 31635619 31635818 -13271752 + MER5C DNA MER1_type 27 297 -27 2147 116 10 7 chr21 31635818 31636128 -13271442 + AluSx SINE Alu 1 311 -1 293 265 59 18 chr21 31636128 31636155 -13271415 + MER5C DNA MER1_type 297 321 -3 2199 116 3 10 chr21 31636160 31636471 -13271099 + AluSx SINE Alu 1 309 -3 2045 147 0 3 chr21 31636718 31637018 -13270552 - AluJb SINE Alu -13 299 1 209 290 196 9 chr21 31637491 31637598 -13269972 - MIR SINE MIR -1 261 135 1996 120 0 83 chr21 31637666 31637992 -13269578 - AluSx SINE Alu -13 299 1 24 53 0 0 chr21 31638170 31638208 -13269362 + AT_rich Low_complexity Low_complexity 1 38 0 2216 123 7 0 chr21 31638264 31638565 -13269005 - AluSq SINE Alu -10 303 1 2295 94 7 0 chr21 31638966 31639254 -13268316 + AluSg SINE Alu 1 290 -20 2152 107 0 29 chr21 31639256 31639564 -13268006 + AluY SINE Alu 1 299 -12 244 175 0 0 chr21 31639700 31639740 -13267830 - MER58A DNA MER1_type 0 224 185 2303 107 0 3 chr21 31640236 31640534 -13267036 - AluSg1 SINE Alu -12 297 1 2204 110 3 3 chr21 31640542 31640833 -13266737 - AluSx SINE Alu -17 295 5 1645 188 70 84 chr21 31641537 31641979 -13265591 + MLT1D LTR MaLR 1 437 -68 1121 135 0 39 chr21 31641979 31642157 -13265413 - FAM SINE Alu -4 171 1 1645 188 70 84 chr21 31642157 31642226 -13265344 + MLT1D LTR MaLR 437 505 0 598 262 89 9 chr21 31642284 31642498 -13265072 - PABL_B LTR ERV1 0 667 437 2176 99 3 0 chr21 31642621 31642924 -13264646 - AluSx SINE Alu 0 304 1 2269 122 0 0 chr21 31643896 31644200 -13263370 - AluSx SINE Alu -6 306 3 290 245 280 35 chr21 31644205 31644348 -13263222 - MER5A DNA MER1_type -2 187 10 513 297 46 46 chr21 31644466 31644705 -13262865 - MIR SINE MIR -11 251 13 203 220 40 0 chr21 31644905 31644955 -13262615 + CT-rich Low_complexity Low_complexity 1 52 0 192 152 0 0 chr21 31645897 31645930 -13261640 + (TG)n Simple_repeat Simple_repeat 2 34 0 1866 154 20 20 chr21 31645933 31646232 -13261338 - AluSx SINE Alu -13 299 1 23 68 0 0 chr21 31646468 31646512 -13261058 + AT_rich Low_complexity Low_complexity 1 44 0 2577 68 0 0 chr21 31646611 31646918 -13260652 + AluY SINE Alu 1 307 -4 1106 152 29 0 chr21 31646984 31647155 -13260415 - AluSg/x SINE Alu -1 309 134 1987 155 7 0 chr21 31647163 31647454 -13260116 - AluJb SINE Alu -13 299 7 885 200 47 6 chr21 31647619 31647789 -13259781 - MER45A DNA AcHobo 0 178 2 2003 85 3 108 chr21 31648080 31648426 -13259144 - AluSx SINE Alu 0 313 1 318 263 70 0 chr21 31649034 31649148 -13258422 - L1ME4a LINE L1 -1 6120 5999 2187 115 0 7 chr21 31649151 31649478 -13258092 - AluSx SINE Alu 0 325 1 207 0 0 0 chr21 31649530 31649553 -13258017 + (TG)n Simple_repeat Simple_repeat 2 24 0 300 224 66 0 chr21 31649775 31649851 -13257719 - L1ME LINE L1 -450 5671 5591 760 91 0 0 chr21 31650721 31650831 -13256739 + L1M4 LINE L1 5212 5321 -825 792 141 7 15 chr21 31650835 31650970 -13256600 + AluJb SINE Alu 1 134 -178 1060 118 0 0 chr21 31650985 31651121 -13256449 + AluSq/x SINE Alu 1 136 -176 2260 120 0 0 chr21 31651122 31651421 -13256149 + AluSx SINE Alu 3 301 -11 225 139 0 47 chr21 31651425 31651468 -13256102 + L1MB8 LINE L1 6129 6169 -9 1108 175 62 9 chr21 31651937 31652148 -13255422 + MER58A DNA MER1_type 1 222 -2 331 210 0 0 chr21 31652226 31652288 -13255282 + L2 LINE L2 3252 3313 0 436 181 152 117 chr21 31652425 31652593 -13254977 + L1MC5 LINE L1 7538 7699 -262 327 80 0 0 chr21 31652593 31652643 -13254927 + L1MB4 LINE L1 6131 6180 0 436 181 152 117 chr21 31652643 31652666 -13254904 + L1MC5 LINE L1 7699 7720 -241 2509 91 0 0 chr21 31652666 31652973 -13254597 + AluSq SINE Alu 2 308 -5 436 181 152 117 chr21 31652973 31653107 -13254463 + L1MC5 LINE L1 7720 7881 -80 2652 50 0 0 chr21 31653107 31653409 -13254161 - AluY SINE Alu -9 302 1 436 181 152 117 chr21 31653409 31653456 -13254114 + L1MC5 LINE L1 7881 7925 -36 2073 104 0 41 chr21 31653457 31653774 -13253796 - AluSg SINE Alu -6 304 1 693 152 0 0 chr21 31653794 31653899 -13253671 + FLAM_C SINE Alu 14 118 -25 2146 125 0 7 chr21 31654089 31654384 -13253186 + AluSx SINE Alu 1 293 -19 485 252 14 14 chr21 31654660 31654799 -13252771 + MIR SINE MIR 11 149 -113 1148 117 17 6 chr21 31654804 31654983 -13252587 - AluSg/x SINE Alu -2 310 130 2130 96 7 40 chr21 31654985 31655286 -13252284 - AluSq SINE Alu -18 295 5 2276 104 3 3 chr21 31656206 31656505 -13251065 + AluSx SINE Alu 5 303 -9 2194 109 7 10 chr21 31656507 31656809 -13250761 + AluSg SINE Alu 1 301 -9 231 36 0 0 chr21 31656848 31656876 -13250694 + (TA)n Simple_repeat Simple_repeat 1 28 0 192 305 12 0 chr21 31657835 31657917 -13249653 - MIR SINE MIR 0 262 180 1121 103 0 7 chr21 31657955 31658101 -13249469 - AluSq/x SINE Alu -168 145 1 189 0 0 0 chr21 31658184 31658205 -13249365 + (CAGAG)n Simple_repeat Simple_repeat 5 25 0 1721 149 19 35 chr21 31658280 31658596 -13248974 - AluJb SINE Alu -1 311 1 258 279 0 0 chr21 31659124 31659185 -13248385 + MIR3 SINE MIR 97 157 -51 291 197 141 0 chr21 31659344 31659415 -13248155 - MER68 LTR ERV1 0 562 482 531 153 174 0 chr21 31659418 31659516 -13248054 - AluSg/x SINE Alu -21 289 175 2138 211 16 43 chr21 31659540 31659927 -13247643 - MER68 LTR ERV1 -89 473 100 2342 106 0 0 chr21 31659927 31660230 -13247340 + AluSx SINE Alu 1 303 -9 2138 211 16 43 chr21 31660230 31660326 -13247244 - MER68 LTR ERV1 -462 100 3 1700 148 22 59 chr21 31660499 31660823 -13246747 - AluJo SINE Alu 0 312 1 2203 122 3 0 chr21 31661358 31661661 -13245909 + AluSx SINE Alu 1 304 -8 1800 133 43 4 chr21 31661663 31661942 -13245628 - AluSx SINE Alu -22 290 1 2149 132 0 0 chr21 31662961 31663256 -13244314 - AluSx SINE Alu -17 295 1 2508 167 31 12 chr21 31663371 31663857 -13243713 + L1MB3 LINE L1 5682 6176 -7 2210 125 0 0 chr21 31664310 31664614 -13242956 + AluSx SINE Alu 1 304 -8 2471 82 0 3 chr21 31665673 31665978 -13241592 + AluSc SINE Alu 1 304 -5 1067 104 24 24 chr21 31665978 31666142 -13241428 + AluSg/x SINE Alu 132 295 -15 1933 72 114 0 chr21 31666147 31666411 -13241159 + AluSp SINE Alu 2 295 -18 2138 137 13 0 chr21 31666511 31666817 -13240753 + AluSq SINE Alu 1 310 -3 1925 161 3 0 chr21 31667772 31668070 -13239500 + AluJb SINE Alu 1 299 -13 1958 139 3 30 chr21 31668073 31668375 -13239195 + AluJo SINE Alu 1 294 -18 1446 99 0 0 chr21 31668586 31668768 -13238802 + AluSq SINE Alu 1 182 -131 2419 92 0 0 chr21 31668802 31669097 -13238473 - AluSg SINE Alu -14 296 2 2216 122 0 0 chr21 31669456 31669750 -13237820 - AluSx SINE Alu -18 294 1 2104 134 0 0 chr21 31669836 31670128 -13237442 + AluSg SINE Alu 1 292 -18 773 167 90 0 chr21 31670214 31670370 -13237200 + MER58 DNA MER1_type 28 197 -144 2076 126 17 0 chr21 31670376 31670669 -13236901 + AluSx SINE Alu 1 298 -14 2295 99 3 3 chr21 31670671 31670973 -13236597 + AluSg SINE Alu 1 302 -8 1976 150 0 0 chr21 31671018 31671311 -13236259 + AluSx SINE Alu 1 293 -19 2541 117 15 80 chr21 31671380 31671698 -13235872 - MER65A LTR ERV1 -14 431 150 1993 145 0 3 chr21 31671698 31672001 -13235569 - AluSx SINE Alu 0 302 1 2541 117 15 80 chr21 31672001 31672142 -13235428 - MER65A LTR ERV1 -295 150 1 2173 99 3 3 chr21 31672709 31673022 -13234548 + AluSx SINE Alu 1 313 0 750 237 80 37 chr21 31673580 31673824 -13233746 + L1MC4 LINE L1 6174 6264 -95 501 139 33 90 chr21 31673899 31673963 -13233607 + L1MC4 LINE L1 7928 7983 -59 2229 108 16 0 chr21 31673963 31674269 -13233301 - AluSx SINE Alu -1 311 1 501 139 33 90 chr21 31674269 31674326 -13233244 + L1MC4 LINE L1 7983 8042 0 2002 141 10 0 chr21 31674336 31674627 -13232943 + AluJb SINE Alu 1 294 -18 1016 145 6 18 chr21 31674734 31674900 -13232670 + FAM SINE Alu 1 49 0 1439 134 190 4 chr21 31674919 31675172 -13232398 + AluJb SINE Alu 1 300 -2 1928 111 62 14 chr21 31675590 31675878 -13231692 + AluSx SINE Alu 2 303 -9 2111 132 10 3 chr21 31676297 31676607 -13230963 - AluSx SINE Alu 0 312 1 189 0 0 0 chr21 31676706 31676727 -13230843 + (CA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr21 31676727 31676749 -13230821 + (A)n Simple_repeat Simple_repeat 1 22 0 827 146 8 0 chr21 31676798 31676921 -13230649 + FLAM_A SINE Alu 1 124 -9 2177 127 3 6 chr21 31676932 31677246 -13230324 + AluSq SINE Alu 1 313 0 242 192 0 19 chr21 31677247 31677299 -13230271 - MER103 DNA DNA -106 60 10 513 181 53 45 chr21 31677414 31677547 -13230023 + FRAM SINE Alu 43 176 0 351 0 0 0 chr21 31677752 31677791 -13229779 + (CA)n Simple_repeat Simple_repeat 2 40 0 2316 93 0 6 chr21 31678052 31678363 -13229207 - AluSg SINE Alu -1 309 1 1283 211 36 46 chr21 31678435 31678556 -13229014 + AluJo SINE Alu 1 122 -190 2004 81 0 12 chr21 31678556 31678814 -13228756 - AluY SINE Alu -19 292 38 1283 211 36 46 chr21 31678814 31678995 -13228575 + AluJo SINE Alu 122 300 -12 2134 113 10 0 chr21 31680275 31680566 -13227004 - AluSq SINE Alu -19 294 1 376 266 161 52 chr21 31681356 31681642 -13225928 - L2 LINE L2 -1 3312 2996 290 315 120 51 chr21 31681705 31681997 -13225573 - L2 LINE L2 -951 2363 2052 2284 230 119 72 chr21 31682336 31683159 -13224411 + L1MEc LINE L1 256 1151 -5245 2053 117 33 0 chr21 31683159 31683460 -13224110 - AluSx SINE Alu 0 310 1 2284 230 119 72 chr21 31683460 31683780 -13223790 + L1MEc LINE L1 1151 1454 -4942 21 0 0 0 chr21 31683831 31683852 -13223718 + AT_rich Low_complexity Low_complexity 1 21 0 2193 127 3 0 chr21 31683892 31684191 -13223379 + AluSx SINE Alu 1 300 -12 2111 125 0 7 chr21 31684383 31684671 -13222899 - AluSx SINE Alu -26 286 1 346 261 114 45 chr21 31684796 31684914 -13222656 + MIR SINE MIR 19 128 -134 1655 144 32 14 chr21 31684914 31685227 -13222343 + AluSx SINE Alu 3 320 0 346 261 114 45 chr21 31685227 31685272 -13222298 + MIR SINE MIR 128 198 -64 1658 176 46 3 chr21 31685272 31685556 -13222014 - AluJb SINE Alu -16 296 1 1022 175 6 17 chr21 31686256 31686433 -13221137 - FAM SINE Alu 0 175 1 889 262 57 0 chr21 31686684 31686932 -13220638 + MIR SINE MIR 1 262 0 2116 142 3 0 chr21 31687043 31687339 -13220231 + AluSx SINE Alu 1 297 -15 2278 110 0 3 chr21 31687438 31687739 -13219831 + AluSq SINE Alu 1 300 -13 259 240 41 83 chr21 31687854 31687975 -13219595 + MER93b LTR ERV1 1 116 -257 * 285 266 184 43 chr21 31687945 31688178 -13219392 + MER93a LTR ERV1 58 323 -79 2308 104 0 0 chr21 31688302 31688591 -13218979 + AluSx SINE Alu 1 289 -23 1234 127 127 20 chr21 31688599 31688844 -13218726 + L1MB8 LINE L1 5908 6178 0 2402 96 0 7 chr21 31689454 31689755 -13217815 + AluSx SINE Alu 1 299 -13 1090 243 79 19 chr21 31689835 31690152 -13217418 - MER46C DNA MER2_type -2 336 1 1945 143 10 3 chr21 31691592 31691886 -13215684 + AluSq SINE Alu 1 296 -17 940 181 0 0 chr21 31692596 31692751 -13214819 + FRAM SINE Alu 1 155 -11 2294 111 0 9 chr21 31693080 31693395 -13214175 + AluSx SINE Alu 1 312 0 1180 203 26 40 chr21 31693457 31693697 -13213873 + L1ME1 LINE L1 5898 6135 -45 1761 171 0 30 chr21 31693697 31693996 -13213574 + AluJb SINE Alu 1 290 -22 1180 203 26 40 chr21 31693996 31694040 -13213530 + L1ME1 LINE L1 6135 6178 -2 660 217 14 0 chr21 31694127 31694265 -13213305 + MIR SINE MIR 3 142 -120 2351 86 0 7 chr21 31694269 31694570 -13213000 - AluSp SINE Alu -14 299 1 2230 104 7 0 chr21 31694594 31694901 -13212669 + AluSp SINE Alu 1 309 -4 2049 139 0 3 chr21 31696050 31696344 -13211226 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr21 31696456 31696477 -13211093 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 31696554 31696576 -13210994 + AT_rich Low_complexity Low_complexity 1 22 0 651 215 28 23 chr21 31696647 31696824 -13210746 - MER104 DNA MER2_type -1 179 2 243 277 0 30 chr21 31696851 31696952 -13210618 + L1M4 LINE L1 3877 3974 -2172 1375 126 20 106 chr21 31697288 31697413 -13210157 + AluSx SINE Alu 1 94 -218 2156 119 3 0 chr21 31697413 31697699 -13209871 + AluSx SINE Alu 1 287 -25 1375 126 20 106 chr21 31697699 31697828 -13209742 + AluSx SINE Alu 94 233 -79 934 226 0 11 chr21 31697975 31698152 -13209418 + FAM SINE Alu 1 175 0 2001 138 13 3 chr21 31699245 31699543 -13208027 + AluSx SINE Alu 8 308 -4 1324 263 158 39 chr21 31699545 31700058 -13207512 + MLT1G LTR MaLR 15 588 -2 257 267 50 10 chr21 31700153 31700254 -13207316 + L1ME LINE L1 367 471 -5901 851 88 0 2 chr21 31700266 31700505 -13207065 + AluSx SINE Alu 7 292 -20 1066 171 0 16 chr21 31700505 31700520 -13207050 + AluSx SINE Alu 119 133 -177 2192 76 38 21 chr21 31700520 31700811 -13206759 + AluY SINE Alu 1 296 -15 1066 171 0 16 chr21 31700811 31700982 -13206588 + AluSx SINE Alu 133 302 -8 784 264 88 68 chr21 31701056 31701661 -13205909 + L1ME LINE L1 536 1152 -5220 723 170 0 37 chr21 31701670 31701805 -13205765 + FLAM_A SINE Alu 8 137 -5 687 268 123 51 chr21 31701807 31701824 -13205746 + L1ME LINE L1 1050 1064 -5471 2322 69 16 0 chr21 31701824 31702128 -13205442 + AluY SINE Alu 1 309 -2 687 268 123 51 chr21 31702128 31702172 -13205398 + L1ME LINE L1 1064 1103 -5432 1988 108 0 4 chr21 31702172 31702451 -13205119 + AluSc SINE Alu 1 278 -31 192 97 0 0 chr21 31702454 31702485 -13205085 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 687 268 123 51 chr21 31702485 31702665 -13204905 + L1ME LINE L1 1104 1270 -5265 2117 104 16 13 chr21 31702665 31702972 -13204598 + AluSq SINE Alu 1 308 -5 687 268 123 51 chr21 31702972 31703241 -13204329 + L1ME LINE L1 1270 1518 -5017 1898 149 3 3 chr21 31703241 31703549 -13204021 + AluSx SINE Alu 1 308 -4 687 268 123 51 chr21 31703549 31703574 -13203996 + L1ME LINE L1 1518 1780 -4755 816 145 122 58 chr21 31703574 31703746 -13203824 + AluJo SINE Alu 121 303 -9 2002 184 119 10 chr21 31703751 31704245 -13203325 + L1MB8 LINE L1 5624 6171 -7 745 194 0 0 chr21 31704282 31704406 -13203164 - AluSq/x SINE Alu -187 125 2 590 213 33 13 chr21 31704422 31704572 -13202998 + L1ME LINE L1 1797 1949 -4614 2064 113 30 0 chr21 31704572 31704873 -13202697 + AluSq SINE Alu 1 310 -3 276 53 0 0 chr21 31704882 31704920 -13202650 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1767 142 4 4 chr21 31705016 31705297 -13202273 - AluSx SINE Alu -31 281 1 2033 104 0 3 chr21 31705425 31705714 -13201856 - AluSg1 SINE Alu -19 290 3 1852 119 0 0 chr21 31705743 31706011 -13201559 + AluY SINE Alu 1 268 -43 1927 114 38 0 chr21 31706182 31706471 -13201099 + AluSp SINE Alu 1 300 -13 2369 70 0 0 chr21 31706553 31706853 -13200717 + AluY SINE Alu 4 303 -8 279 259 38 39 chr21 31706918 31707081 -13200489 + L1ME LINE L1 5654 5822 -299 1560 147 52 0 chr21 31707089 31707361 -13200209 + AluJb SINE Alu 1 286 -26 1727 88 111 11 chr21 31707625 31707887 -13199683 + AluSq SINE Alu 1 288 -25 21 53 0 35 chr21 31707887 31707924 -13199646 + AT_rich Low_complexity Low_complexity 1 38 -17 2290 63 0 0 chr21 31707924 31708228 -13199342 + AluY SINE Alu 1 304 0 21 53 0 35 chr21 31708228 31708246 -13199324 + AT_rich Low_complexity Low_complexity 38 55 0 1837 142 10 3 chr21 31708256 31708558 -13199012 + AluSq SINE Alu 1 304 -9 228 172 0 35 chr21 31710114 31710172 -13197398 + (CGGGG)n Simple_repeat Simple_repeat 4 59 0 321 295 54 60 chr21 31710531 31710697 -13196873 - MIR3 SINE MIR -30 178 14 1762 148 31 3 chr21 31710873 31711163 -13196407 - AluSx SINE Alu -14 298 1 450 247 83 40 chr21 31711362 31711570 -13196000 - MLT1J LTR MaLR -246 265 8 1807 191 10 39 chr21 31712519 31712927 -13194643 - MSTD LTR MaLR 0 396 1 2071 119 0 7 chr21 31713012 31713314 -13194256 + AluSx SINE Alu 1 300 -12 2227 91 0 0 chr21 31713435 31713733 -13193837 + AluSg SINE Alu 1 298 -12 281 267 1 47 chr21 31714443 31714551 -13193019 - MLT1K LTR MaLR -2 613 495 246 171 0 0 chr21 31714558 31714599 -13192971 + MLT1A1 LTR MaLR 1 41 -324 1821 117 0 0 chr21 31714649 31714906 -13192664 + AluSg SINE Alu 1 257 -53 1697 152 64 0 chr21 31714910 31715073 -13192497 - AluJb SINE Alu -11 301 111 210 37 0 0 chr21 31715073 31715100 -13192470 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1697 152 64 0 chr21 31715100 31715219 -13192351 - AluJb SINE Alu -201 111 1 2176 98 3 0 chr21 31715253 31715548 -13192022 + AluSp SINE Alu 1 296 -17 2273 74 0 7 chr21 31715780 31716078 -13191492 - AluY SINE Alu -15 296 1 353 94 0 0 chr21 31716430 31716483 -13191087 + AluSp/q SINE Alu 242 294 -9 2222 100 0 3 chr21 31716493 31716793 -13190777 + AluSq SINE Alu 1 299 -14 1099 67 0 0 chr21 31717368 31717502 -13190068 + AluSc SINE Alu 1 134 -175 2083 107 0 7 chr21 31717502 31717635 -13189935 + AluSg SINE Alu 1 133 -177 2517 55 0 0 chr21 31717635 31717943 -13189627 + AluY SINE Alu 1 308 -3 2083 107 0 7 chr21 31717943 31718100 -13189470 + AluSg SINE Alu 133 289 -21 510 73 0 0 chr21 31719631 31719699 -13187871 - AluSg SINE Alu -7 305 238 936 122 0 14 chr21 31719713 31719860 -13187710 - AluSg SINE Alu -165 145 1 1813 158 3 0 chr21 31719860 31720163 -13187407 - AluJb SINE Alu -8 304 1 2254 86 23 0 chr21 31720176 31720477 -13187093 - AluSc SINE Alu -1 308 1 2043 91 47 0 chr21 31720562 31720838 -13186732 + AluSx SINE Alu 1 289 -23 389 264 66 0 chr21 31720885 31720991 -13186579 - MIR3 SINE MIR -18 190 78 428 191 0 67 chr21 31722375 31722411 -13185159 - MIR SINE MIR -41 221 184 2161 78 0 7 chr21 31722411 31722695 -13184875 - AluSx SINE Alu -12 300 19 428 191 0 67 chr21 31722695 31722763 -13184807 - MIR SINE MIR -78 184 124 259 248 120 53 chr21 31722734 31722867 -13184703 + MIR SINE MIR 120 261 -1 * 2426 31 3 0 chr21 31723058 31723348 -13184222 + AluY SINE Alu 1 291 -20 2038 105 7 3 chr21 31723385 31723679 -13183891 + AluSx SINE Alu 1 295 -17 816 129 7 50 chr21 31723805 31723944 -13183626 + FLAM_C SINE Alu 1 133 0 2242 83 3 0 chr21 31724284 31724584 -13182986 + AluY SINE Alu 1 301 -10 2139 99 17 0 chr21 31724683 31724977 -13182593 - AluSx SINE Alu -13 299 1 873 148 43 19 chr21 31725138 31725300 -13182270 + FRAM SINE Alu 11 176 0 2138 109 13 0 chr21 31725304 31725608 -13181962 + L1PA14 LINE L1 5805 6112 -49 1903 174 36 51 chr21 31725710 31726101 -13181469 + MLT1B LTR MaLR 6 390 0 1544 199 7 0 chr21 31726942 31727233 -13180337 + AluJb SINE Alu 1 293 -19 2203 91 0 7 chr21 31727233 31727540 -13180030 + AluSx SINE Alu 1 305 -7 637 172 80 20 chr21 31727545 31727696 -13179874 + Charlie2 DNA MER1_type 1909 2068 -794 1140 83 0 0 chr21 31727759 31727904 -13179666 + AluSq/x SINE Alu 1 145 -168 2082 87 11 0 chr21 31727904 31728219 -13179351 + AluSx SINE Alu 3 320 0 2231 85 0 0 chr21 31728221 31728514 -13179056 + AluSg1 SINE Alu 3 295 -14 31 26 0 0 chr21 31728851 31728889 -13178681 + AT_rich Low_complexity Low_complexity 1 38 0 2044 128 3 0 chr21 31728889 31729185 -13178385 + AluSq SINE Alu 1 297 -16 1439 157 29 168 chr21 31729235 31729502 -13178068 - L1MB8 LINE L1 -6 6172 5869 2148 116 0 0 chr21 31729502 31729803 -13177767 - AluSx SINE Alu -11 301 1 1439 157 29 168 chr21 31729803 31729820 -13177750 - L1MB8 LINE L1 -309 5869 5851 1554 141 6 87 chr21 31729820 31729973 -13177597 - AluJo SINE Alu -25 287 123 2172 89 3 13 chr21 31729973 31730275 -13177295 - AluSx SINE Alu -13 299 1 1831 158 3 0 chr21 31730276 31730579 -13176991 - AluSx SINE Alu -2 310 7 1554 141 6 87 chr21 31730579 31730735 -13176835 - AluJo SINE Alu -188 124 1 1439 157 29 168 chr21 31730735 31730774 -13176796 - L1MB8 LINE L1 -327 5851 5808 2048 97 0 37 chr21 31730774 31730939 -13176631 - AluSc SINE Alu -20 289 138 2256 55 6 55 chr21 31730939 31731265 -13176305 - AluY SINE Alu -1 310 1 2048 97 0 37 chr21 31731265 31731399 -13176171 - AluSc SINE Alu -171 138 1 1586 159 51 3 chr21 31731403 31731698 -13175872 - AluJb SINE Alu -3 309 1 1439 157 29 168 chr21 31731698 31731721 -13175849 - L1MB8 LINE L1 -373 5805 3392 2164 95 17 0 chr21 31731721 31732016 -13175554 - AluSc SINE Alu -9 300 1 385 251 77 62 chr21 31732016 31732211 -13175359 - L1MC3 LINE L1 -1896 5889 5692 1843 118 14 0 chr21 31732392 31732671 -13174899 + AluSx SINE Alu 1 283 -29 2141 57 0 54 chr21 31733254 31733588 -13173982 - AluY SINE Alu 0 318 1 2099 93 3 14 chr21 31733596 31733885 -13173685 - AluSg SINE Alu -24 286 1 2149 88 7 3 chr21 31736215 31736512 -13171058 - AluSx SINE Alu -14 298 1 6787 103 32 10 chr21 31736653 31737609 -13169961 + L1MA3 LINE L1 5157 6143 -162 2068 112 0 34 chr21 31737609 31737932 -13169638 + AluSx SINE Alu 1 312 0 6787 103 32 10 chr21 31737932 31738099 -13169471 + L1MA3 LINE L1 6143 6305 0 316 116 0 0 chr21 31738165 31738208 -13169362 - L1PB4 LINE L1 -289 5867 5825 1646 210 6 20 chr21 31738411 31738586 -13168984 - L1PA16 LINE L1 -20 6146 5977 2289 87 3 0 chr21 31738586 31738885 -13168685 - AluSc SINE Alu -9 300 1 1646 210 6 20 chr21 31738885 31739057 -13168513 - L1PA16 LINE L1 -189 5977 5804 863 188 30 18 chr21 31739171 31739336 -13168234 + FAM SINE Alu 1 167 -8 2441 44 0 3 chr21 31740404 31740700 -13166870 - AluY SINE Alu -16 295 1 234 269 26 39 chr21 31740725 31740803 -13166767 + MLT1K LTR MaLR 333 409 -179 402 109 0 0 chr21 31740857 31740912 -13166658 - U6 snRNA snRNA -51 56 2 2086 92 0 14 chr21 31742091 31742385 -13165185 + AluSc SINE Alu 18 307 -2 1603 158 41 27 chr21 31742663 31742955 -13164615 - AluJb SINE Alu -16 296 1 1945 131 17 0 chr21 31742991 31743154 -13164416 - AluSx SINE Alu -17 295 123 429 36 0 0 chr21 31743154 31743209 -13164361 + (TG)n Simple_repeat Simple_repeat 2 56 0 1945 131 17 0 chr21 31743209 31743335 -13164235 - AluSx SINE Alu -189 123 1 2183 108 0 0 chr21 31743363 31743668 -13163902 + AluSg SINE Alu 4 308 -2 1659 187 0 7 chr21 31744054 31744359 -13163211 + AluJb SINE Alu 1 303 -9 374 224 13 0 chr21 31744600 31744676 -13162894 - MER63 DNA MER1_type -320 742 40 2244 81 0 43 chr21 31745430 31745753 -13161817 + AluSc SINE Alu 1 309 0 2396 87 0 0 chr21 31746036 31746348 -13161222 + AluSx SINE Alu 1 312 0 2109 119 10 0 chr21 31748271 31748573 -13158997 + AluSg SINE Alu 1 305 -5 2335 73 0 3 chr21 31749342 31749642 -13157928 + AluY SINE Alu 1 299 -12 1496 148 4 4 chr21 31749652 31749889 -13157681 + AluJb SINE Alu 37 273 -39 26 0 0 0 chr21 31749894 31749920 -13157650 + AT_rich Low_complexity Low_complexity 1 26 0 2461 69 0 3 chr21 31751420 31751723 -13155847 + AluY SINE Alu 1 302 -9 2082 123 34 3 chr21 31751748 31752041 -13155529 + AluSq SINE Alu 1 302 -11 25 31 0 0 chr21 31752392 31752424 -13155146 + AT_rich Low_complexity Low_complexity 1 32 0 375 263 25 34 chr21 31752485 31752603 -13154967 - MER5B DNA MER1_type -60 118 2 924 189 24 0 chr21 31752677 31752883 -13154687 - L1MB3 LINE L1 -2 6181 5971 2383 97 0 0 chr21 31753755 31754065 -13153505 + AluSq SINE Alu 1 310 -3 1355 142 19 9 chr21 31754338 31754549 -13153021 + AluJb SINE Alu 1 213 -99 207 191 0 0 chr21 31754560 31754607 -13152963 + A-rich Low_complexity Low_complexity 1 47 0 1221 177 165 8 chr21 31755175 31755292 -13152278 + AluJo SINE Alu 1 98 -204 216 0 0 0 chr21 31755292 31755316 -13152254 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1221 177 165 8 chr21 31755316 31755452 -13152118 + AluJo SINE Alu 98 294 -8 1673 120 50 0 chr21 31755509 31755751 -13151819 - AluSc SINE Alu -16 293 40 2411 71 7 0 chr21 31755939 31756236 -13151334 - AluY SINE Alu -12 299 1 2071 125 0 17 chr21 31756246 31756543 -13151027 - AluSx SINE Alu -20 292 1 2014 137 14 0 chr21 31757306 31757599 -13149971 + AluSx SINE Alu 1 297 -15 201 147 0 0 chr21 31758681 31758715 -13148855 + (A)n Simple_repeat Simple_repeat 1 34 0 191 268 0 0 chr21 31759153 31759194 -13148376 - MIR SINE MIR -68 194 154 245 179 0 0 chr21 31759436 31759475 -13148095 - Alu SINE Alu -94 39 1 2330 101 0 19 chr21 31759520 31759828 -13147742 - AluSp SINE Alu -11 302 1 2293 96 3 0 chr21 31759982 31760284 -13147286 + AluSc SINE Alu 1 303 -6 180 0 0 0 chr21 31761639 31761659 -13145911 + (T)n Simple_repeat Simple_repeat 1 20 0 2171 60 0 21 chr21 31763227 31763508 -13144062 + AluY SINE Alu 1 275 -36 330 91 0 0 chr21 31763510 31763565 -13144005 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1798 156 0 0 chr21 31763705 31763975 -13143595 + AluJb SINE Alu 14 283 -29 1869 144 7 14 chr21 31764293 31764584 -13142986 - AluJb SINE Alu -23 289 1 260 196 89 0 chr21 31765204 31765260 -13142310 + MIR3 SINE MIR 127 187 -21 345 303 152 58 chr21 31765740 31765815 -13141755 - L2 LINE L2 -6 3307 3240 2330 83 0 13 chr21 31765815 31766115 -13141455 + AluSq SINE Alu 1 296 -17 345 303 152 58 chr21 31766115 31766316 -13141254 - L2 LINE L2 -73 3240 3005 2520 153 114 10 chr21 31766539 31767037 -13140533 - MER44D DNA MER2_type 0 605 1 335 336 134 32 chr21 31767454 31767952 -13139618 - L2 LINE L2 -33 3280 2737 2262 106 7 3 chr21 31768030 31768332 -13139238 + AluSx SINE Alu 1 303 -9 1151 159 0 22 chr21 31768420 31768602 -13138968 - AluJo SINE Alu -134 178 1 2317 98 0 0 chr21 31768854 31769149 -13138421 - AluY SINE Alu -16 295 1 1999 135 10 3 chr21 31769480 31769776 -13137794 + AluSx SINE Alu 1 298 -14 386 276 15 15 chr21 31770178 31770312 -13137258 - MER58A DNA MER1_type 0 167 34 693 245 104 5 chr21 31770365 31770557 -13137013 - MER58 DNA MER1_type -2208 212 2 591 255 150 10 chr21 31770861 31771061 -13136509 - MIR SINE MIR -6 256 29 195 42 0 0 chr21 31771212 31771236 -13136334 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1834 95 4 8 chr21 31771239 31771492 -13136078 - AluSx SINE Alu -37 275 24 205 287 35 56 chr21 31771620 31771763 -13135807 + MIR SINE MIR 13 152 -110 486 191 367 0 chr21 31775161 31775349 -13132221 + MIR SINE MIR 5 261 -1 2267 99 0 3 chr21 31776567 31776860 -13130710 + AluSq SINE Alu 1 292 -21 2318 69 13 28 chr21 31777033 31777351 -13130219 - AluSq SINE Alu 0 313 1 2470 57 0 28 chr21 31777775 31778092 -13129478 - AluY SINE Alu -3 308 1 442 238 275 26 chr21 31778609 31778798 -13128772 - MIR SINE MIR -3 259 24 2111 138 14 0 chr21 31779151 31779442 -13128128 - AluSg SINE Alu -15 295 1 198 191 0 0 chr21 31779643 31779685 -13127885 + A-rich Low_complexity Low_complexity 1 42 0 324 308 136 76 chr21 31780440 31781255 -13126315 - L1M2 LINE L1 -5448 1401 538 344 263 0 0 chr21 31785161 31785294 -13122276 + (CCG)n Simple_repeat Simple_repeat 1 133 0 2329 84 7 3 chr21 31786500 31786798 -13120772 + AluSx SINE Alu 1 299 -13 462 152 13 152 chr21 31788978 31789129 -13118441 + L2 LINE L2 3182 3311 -2 189 74 0 0 chr21 31790638 31790665 -13116905 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr21 31791886 31791914 -13115656 + AT_rich Low_complexity Low_complexity 1 28 0 257 208 0 0 chr21 31794323 31794371 -13113199 - Charlie5 DNA MER1_type -2526 86 39 2316 89 3 3 chr21 31794648 31794951 -13112619 + AluSp SINE Alu 1 303 -10 24 0 0 0 chr21 31797348 31797372 -13110198 + AT_rich Low_complexity Low_complexity 1 24 0 421 207 164 17 chr21 31797505 31797621 -13109949 - L2 LINE L2 -2 3311 3179 649 224 12 77 chr21 31797631 31797705 -13109865 - MIR SINE MIR -87 175 98 1976 125 17 0 chr21 31797705 31797992 -13109578 + AluSg SINE Alu 1 292 -18 649 224 12 77 chr21 31797992 31798087 -13109483 - MIR SINE MIR -164 98 17 2209 88 3 14 chr21 31798280 31798575 -13108995 + AluSp SINE Alu 1 292 -21 251 28 28 0 chr21 31802238 31802274 -13105296 + (TA)n Simple_repeat Simple_repeat 1 37 0 1238 175 63 5 chr21 31804596 31804819 -13102751 + MER46A DNA MER2_type 1 236 0 2208 89 20 0 chr21 31805113 31805405 -13102165 - AluSx SINE Alu -14 298 1 22 0 0 0 chr21 31805471 31805493 -13102077 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 31805981 31806004 -13101566 + AT_rich Low_complexity Low_complexity 1 23 0 882 0 0 0 chr21 31807674 31807772 -13099798 + (CA)n Simple_repeat Simple_repeat 2 99 0 2128 111 7 7 chr21 31808924 31809221 -13098349 + AluSx SINE Alu 1 297 -15 1649 104 0 125 chr21 31810005 31810302 -13097268 + AluSg1 SINE Alu 24 283 -26 279 0 0 0 chr21 31810309 31810340 -13097230 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1123 79 18 61 chr21 31810346 31810511 -13097059 + AluSg SINE Alu 1 158 -152 234 0 0 0 chr21 31810533 31810559 -13097011 + (A)n Simple_repeat Simple_repeat 1 26 0 640 166 185 19 chr21 31810559 31810716 -13096854 + AluJb SINE Alu 120 302 -10 1661 123 8 0 chr21 31810735 31810979 -13096591 + AluSg/x SINE Alu 67 312 0 1041 150 0 53 chr21 31810981 31811168 -13096402 + AluSg/x SINE Alu 119 295 -14 399 259 115 0 chr21 31812493 31812632 -13094938 + MER112 DNA MER1_type 94 248 -12 1944 159 68 19 chr21 31812764 31812991 -13094579 + MER1B DNA MER1_type 1 250 -2460 2613 55 0 0 chr21 31812991 31813298 -13094272 + AluY SINE Alu 3 309 -2 1944 159 68 19 chr21 31813298 31813391 -13094179 + MER1B DNA MER1_type 250 337 0 288 0 0 0 chr21 31814084 31814116 -13093454 + (TA)n Simple_repeat Simple_repeat 1 32 0 2551 50 0 7 chr21 31814117 31814415 -13093155 - AluY SINE Alu -15 296 1 1576 165 61 25 chr21 31815303 31815582 -13091988 - AluJo SINE Alu -23 289 1 1900 115 3 30 chr21 31816704 31817009 -13090561 - AluSx SINE Alu -15 297 1 208 225 12 38 chr21 31818754 31818834 -13088736 + C-rich Low_complexity Low_complexity 5 82 0 2214 108 3 0 chr21 31820099 31820386 -13087184 - AluSx SINE Alu -24 288 1 2170 100 10 3 chr21 31820495 31820785 -13086785 - AluSq SINE Alu -21 292 1 588 115 0 0 chr21 31821033 31821111 -13086459 + MADE1 DNA Mariner 3 80 0 539 188 10 10 chr21 31821743 31821839 -13085731 + MER2 DNA MER2_type 1 96 -249 1200 139 65 14 chr21 31821839 31822055 -13085515 + AluJo SINE Alu 86 312 0 846 173 164 35 chr21 31822055 31822213 -13085357 + MER2 DNA MER2_type 88 285 -60 1775 147 27 7 chr21 31822213 31822506 -13085064 - AluJo SINE Alu -13 299 1 846 173 164 35 chr21 31822506 31822573 -13084997 + MER2 DNA MER2_type 285 342 -3 2293 126 0 0 chr21 31822839 31823149 -13084421 + AluSx SINE Alu 1 310 -2 2466 68 0 0 chr21 31823181 31823475 -13084095 - AluY SINE Alu -17 294 1 2340 97 7 7 chr21 31823770 31824080 -13083490 + AluSx SINE Alu 1 310 -2 2207 94 3 30 chr21 31824226 31824524 -13083046 - AluSc SINE Alu -14 295 6 21 36 0 0 chr21 31824536 31824564 -13083006 + AT_rich Low_complexity Low_complexity 1 28 0 1292 113 0 0 chr21 31824708 31824876 -13082694 - AluSc SINE Alu -7 302 135 663 225 82 11 chr21 31825255 31825437 -13082133 + MARNA DNA Mariner 290 484 -102 709 232 70 11 chr21 31825509 31825694 -13081876 + MIR SINE MIR 35 230 -32 2300 86 0 0 chr21 31826431 31826744 -13080826 + AluSq SINE Alu 7 319 0 2067 129 0 23 chr21 31826929 31827239 -13080331 - AluSx SINE Alu -9 303 1 729 169 76 0 chr21 31827555 31827673 -13079897 - FLAM_A SINE Alu -4 129 3 2516 43 3 10 chr21 31827684 31827983 -13079587 - AluY SINE Alu -14 297 1 1473 91 91 0 chr21 31828781 31828991 -13078579 - MER30 DNA MER1_type 0 230 2 1700 177 7 13 chr21 31829704 31830003 -13077567 - AluJo SINE Alu -15 297 1 273 167 56 0 chr21 31830078 31830132 -13077438 - Tigger5 DNA MER2_type -3 2320 2264 238 222 0 19 chr21 31830155 31830209 -13077361 - Tigger5 DNA MER2_type -2270 53 1 2277 81 7 14 chr21 31830699 31830996 -13076574 - AluY SINE Alu -16 295 1 2311 99 3 0 chr21 31831003 31831306 -13076264 - AluSq SINE Alu -9 304 1 263 320 62 47 chr21 31831415 31831543 -13076027 + MIR SINE MIR 1 130 -132 27 0 0 0 chr21 31831657 31831684 -13075886 + AT_rich Low_complexity Low_complexity 1 27 0 1894 154 7 7 chr21 31831704 31832002 -13075568 + AluJb SINE Alu 1 298 -14 838 142 7 64 chr21 31832068 31832209 -13075361 - FLAM_C SINE Alu 0 133 1 221 244 130 78 chr21 31833630 31833745 -13073825 + L2 LINE L2 2496 2616 -698 2139 84 56 0 chr21 31834040 31834155 -13073415 + AluY SINE Alu 1 108 -203 2298 65 41 3 chr21 31834155 31834449 -13073121 + AluY SINE Alu 1 305 -6 2139 84 56 0 chr21 31834449 31834617 -13072953 + AluY SINE Alu 108 300 -11 1345 244 82 38 chr21 31834634 31835374 -13072196 - L1ME3A LINE L1 -234 5936 5164 309 351 23 8 chr21 31835378 31835509 -13072061 + L2 LINE L2 2687 2819 -495 2322 84 3 7 chr21 31835597 31835893 -13071677 - AluSx SINE Alu -17 295 1 222 343 15 0 chr21 31836185 31836252 -13071318 - MIR SINE MIR -60 148 81 2315 103 0 0 chr21 31836413 31836705 -13070865 + AluSx SINE Alu 1 292 -20 2230 97 0 23 chr21 31836797 31837107 -13070463 + AluSp SINE Alu 1 303 -10 1849 161 23 0 chr21 31837431 31837730 -13069840 + AluJo SINE Alu 6 311 -1 23 54 0 0 chr21 31837740 31837777 -13069793 + AT_rich Low_complexity Low_complexity 1 37 0 196 321 116 18 chr21 31837867 31837979 -13069591 - MIR3 SINE MIR -11 197 75 5363 143 74 18 chr21 31837999 31838242 -13069328 - L1MA7 LINE L1 -4 6287 6059 2360 92 0 0 chr21 31838242 31838548 -13069022 + AluSq SINE Alu 1 306 -7 5363 143 74 18 chr21 31838548 31839385 -13068185 - L1MA7 LINE L1 -232 6059 5157 1422 185 4 48 chr21 31839411 31839681 -13067889 - AluJb SINE Alu -54 258 1 2376 72 0 31 chr21 31839753 31840073 -13067497 - AluY SINE Alu -1 310 1 835 124 48 76 chr21 31840073 31840218 -13067352 - FLAM_C SINE Alu -1 142 2 1821 142 39 4 chr21 31840241 31840522 -13067048 - AluSx SINE Alu -18 294 4 2392 82 10 0 chr21 31840797 31841100 -13066470 - AluSx SINE Alu -6 306 1 42 82 0 0 chr21 31841446 31841544 -13066026 + AT_rich Low_complexity Low_complexity 1 98 0 430 263 119 71 chr21 31841820 31841907 -13065663 - L1MA1 LINE L1 -257 6045 5959 1381 249 74 39 chr21 31841907 31842357 -13065213 - L1ME3A LINE L1 -208 5962 5486 2273 90 3 13 chr21 31842357 31842658 -13064912 - AluSx SINE Alu -14 298 1 1381 249 74 39 chr21 31842658 31842773 -13064797 - L1ME3A LINE L1 -684 5486 5377 1871 145 38 7 chr21 31842906 31843195 -13064375 - AluSx SINE Alu -14 298 1 2346 96 0 3 chr21 31843960 31844261 -13063309 + AluSg SINE Alu 1 300 -10 1777 187 3 16 chr21 31844273 31844583 -13062987 + AluJo SINE Alu 1 306 -6 2323 99 0 0 chr21 31844647 31844939 -13062631 - AluSg SINE Alu -18 292 1 242 244 39 13 chr21 31844950 31845028 -13062542 + MLT1K LTR MaLR 509 588 0 1943 139 10 7 chr21 31845212 31845515 -13062055 - AluJb SINE Alu 0 312 9 2407 15 19 0 chr21 31846007 31846273 -13061297 - L1PA2 LINE L1 -7 6148 5878 2357 102 3 0 chr21 31846356 31846661 -13060909 - AluSp SINE Alu -7 306 1 26 88 0 0 chr21 31846833 31846901 -13060669 + AT_rich Low_complexity Low_complexity 1 68 0 1899 155 7 0 chr21 31847094 31847385 -13060185 - AluSq SINE Alu -20 293 1 1947 178 76 35 chr21 31847537 31847970 -13059600 - LTR2B LTR ERV1 0 490 40 2615 56 0 0 chr21 31848077 31848382 -13059188 + AluY SINE Alu 1 305 -6 415 240 147 0 chr21 31848500 31848629 -13058941 - MIR SINE MIR -15 247 100 713 348 97 24 chr21 31848858 31849436 -13058134 + L2 LINE L2 2046 2665 -649 720 154 81 0 chr21 31849634 31849757 -13057813 - FLAM_C SINE Alu 0 133 1 272 358 204 12 chr21 31849959 31850121 -13057449 + L2 LINE L2 3028 3220 -52 1951 112 11 7 chr21 31850598 31850875 -13056695 + AluSx SINE Alu 1 278 -34 224 29 0 29 chr21 31850875 31850909 -13056661 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2642 17 10 3 chr21 31850972 31851274 -13056296 - AluY SINE Alu -7 304 1 1301 101 59 101 chr21 31851274 31851419 -13056151 + MER30 DNA MER1_type 3 136 -94 2462 52 0 3 chr21 31851419 31851710 -13055860 - AluY SINE Alu -21 290 1 1301 101 59 101 chr21 31851710 31851802 -13055768 + MER30 DNA MER1_type 136 230 0 686 152 152 0 chr21 31851802 31851934 -13055636 + FRAM SINE Alu 22 173 -3 2452 85 0 3 chr21 31853026 31853333 -13054237 - AluSc SINE Alu -3 306 1 302 338 93 13 chr21 31853386 31853537 -13054033 - L1ME4a LINE L1 -226 5895 5733 25 0 0 0 chr21 31854168 31854193 -13053377 + AT_rich Low_complexity Low_complexity 1 25 0 2143 114 3 16 chr21 31854334 31854640 -13052930 + AluSq SINE Alu 1 302 -11 2494 64 0 0 chr21 31855228 31855523 -13052047 - AluY SINE Alu -15 296 2 1911 169 0 0 chr21 31855545 31855853 -13051717 - AluJo SINE Alu -4 308 1 27 0 0 0 chr21 31855885 31855912 -13051658 + AT_rich Low_complexity Low_complexity 1 27 0 814 161 0 0 chr21 31855912 31856030 -13051540 - FLAM_C SINE Alu -15 118 1 2078 96 55 17 chr21 31856037 31856328 -13051242 - AluSx SINE Alu -10 302 1 2299 119 0 0 chr21 31856484 31856796 -13050774 + AluSx SINE Alu 1 312 0 568 159 0 0 chr21 31857222 31857310 -13050260 - AluJ SINE Alu -14 298 211 1004 135 39 6 chr21 31857312 31857468 -13050102 - AluJ SINE Alu -151 161 1 2362 95 0 3 chr21 31857809 31858114 -13049456 - AluY SINE Alu -7 304 1 5554 139 6 34 chr21 31858292 31858665 -13048905 - L1 LINE L1 -1402 4744 4362 1816 130 14 34 chr21 31858665 31858958 -13048612 - AluJb SINE Alu -5 307 21 5554 139 6 34 chr21 31858958 31859017 -13048553 - L1 LINE L1 -1784 4362 4303 1509 153 46 29 chr21 31859017 31859321 -13048249 + AluJb SINE Alu 1 309 0 5554 139 6 34 chr21 31859321 31859335 -13048235 - L1 LINE L1 -1843 4303 4290 2194 114 0 3 chr21 31859335 31859632 -13047938 - AluSx SINE Alu -16 296 1 5554 139 6 34 chr21 31859632 31860165 -13047405 - L1 LINE L1 -1856 4290 3789 5417 136 18 22 chr21 31860147 31860373 -13047197 + L1MA6 LINE L1 5397 5622 -678 * 2264 112 0 7 chr21 31860373 31860677 -13046893 + AluSx SINE Alu 1 302 -10 5417 136 18 22 chr21 31860677 31861358 -13046212 + L1MA6 LINE L1 5622 6300 0 26 30 0 0 chr21 31861628 31861661 -13045909 + AT_rich Low_complexity Low_complexity 1 33 0 2230 109 0 28 chr21 31862110 31862430 -13045140 + AluSp SINE Alu 1 311 -2 2308 94 0 0 chr21 31862449 31862747 -13044823 - AluSx SINE Alu -14 298 1 1705 232 104 13 chr21 31862837 31863290 -13044280 - L1ME3A LINE L1 -9 6161 5668 253 312 65 43 chr21 31863290 31863428 -13044142 - MIR SINE MIR -107 155 15 2196 106 20 0 chr21 31863489 31863782 -13043788 - AluSc SINE Alu -10 299 1 829 226 49 0 chr21 31863829 31863993 -13043577 - MER45A DNA AcHobo -5 173 2 24 0 0 0 chr21 31864661 31864685 -13042885 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr21 31864950 31864975 -13042595 + (TA)n Simple_repeat Simple_repeat 2 26 0 2533 46 0 13 chr21 31865416 31865723 -13041847 - AluY SINE Alu -8 303 1 31 26 0 0 chr21 31865730 31865768 -13041802 + AT_rich Low_complexity Low_complexity 1 38 0 2154 90 11 0 chr21 31865773 31866078 -13041492 + AluSc SINE Alu 1 308 0 367 166 19 44 chr21 31866183 31866446 -13041124 + AluJo SINE Alu 2 282 -20 1323 76 12 0 chr21 31866882 31867053 -13040517 - AluY SINE Alu -16 295 123 2563 50 0 0 chr21 31867234 31867531 -13040039 + AluY SINE Alu 2 298 -13 276 149 0 0 chr21 31867830 31867877 -13039693 + (TA)n Simple_repeat Simple_repeat 2 48 0 2360 89 0 7 chr21 31868280 31868582 -13038988 - AluSg SINE Alu -10 300 1 314 288 98 60 chr21 31868819 31869034 -13038536 + L3 LINE CR1 1349 1571 -6 2425 80 0 3 chr21 31869895 31870195 -13037375 - AluSx SINE Alu -13 299 1 698 233 119 19 chr21 31870448 31870658 -13036912 + MIR SINE MIR 29 259 -3 991 151 35 13 chr21 31870804 31871140 -13036430 + MER33 DNA MER1_type 18 358 -5 302 143 18 0 chr21 31871174 31871230 -13036340 + MER5A DNA MER1_type 39 95 -94 186 118 0 0 chr21 31872537 31872571 -13034999 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 345 260 204 72 chr21 31872792 31873368 -13034202 - L1M2 LINE L1 -5519 1330 600 1599 183 10 10 chr21 31874892 31875187 -13032383 - AluJo SINE Alu -11 301 7 357 234 23 184 chr21 31875364 31875434 -13032136 + MER5A DNA MER1_type 7 87 -102 1390 178 14 44 chr21 31875434 31875727 -13031843 + AluJo SINE Alu 5 288 -24 357 234 23 184 chr21 31875727 31875874 -13031696 + MER5A DNA MER1_type 87 189 0 373 174 186 12 chr21 31876020 31876106 -13031464 + L2 LINE L2 3209 3309 -4 240 254 263 0 chr21 31876611 31876725 -13030845 + MIR SINE MIR 14 157 -105 1185 126 0 0 chr21 31876917 31877076 -13030494 + FRAM SINE Alu 9 167 -9 1025 251 89 61 chr21 31877249 31877559 -13030011 - L1ME4a LINE L1 -2 6119 5819 1986 154 0 7 chr21 31877559 31877865 -13029705 - AluSx SINE Alu -8 304 1 1025 251 89 61 chr21 31877865 31878147 -13029423 - L1ME4a LINE L1 -302 5819 5510 1448 175 77 11 chr21 31878634 31878908 -13028662 + AluJo SINE Alu 1 292 -10 264 152 45 0 chr21 31878923 31878989 -13028581 + GA-rich Low_complexity Low_complexity 2 70 0 2262 96 0 43 chr21 31879804 31880128 -13027442 + AluSg SINE Alu 1 310 0 206 121 0 0 chr21 31880465 31880498 -13027072 + (TG)n Simple_repeat Simple_repeat 2 34 0 318 301 0 0 chr21 31881062 31881175 -13026395 + L2 LINE L2 3190 3302 -11 299 293 29 43 chr21 31881294 31881434 -13026136 - L2 LINE L2 -532 2782 2645 412 202 76 25 chr21 31882042 31882161 -13025409 - L1ME4a LINE L1 -2 6119 5995 341 284 119 20 chr21 31882281 31882482 -13025088 - Charlie8 DNA MER1_type -2194 223 3 236 139 0 0 chr21 31882484 31882520 -13025050 - L1ME4a LINE L1 -214 5907 5872 2211 117 7 0 chr21 31883064 31883364 -13024206 - AluSx SINE Alu -10 302 1 2513 69 0 0 chr21 31883587 31883891 -13023679 - AluY SINE Alu -7 304 1 719 203 0 0 chr21 31883897 31884015 -13023555 - FLAM_C SINE Alu -15 128 11 247 161 16 16 chr21 31884080 31884142 -13023428 + CT-rich Low_complexity Low_complexity 2 63 0 1371 188 11 39 chr21 31884143 31884425 -13023145 - AluJb SINE Alu -38 274 1 1770 142 13 59 chr21 31885492 31885795 -13021775 - AluSx SINE Alu -16 296 8 236 296 120 0 chr21 31886168 31886276 -13021294 - MLT1K LTR MaLR -326 262 142 826 129 0 16 chr21 31886612 31886736 -13020834 - AluSg/x SINE Alu -21 289 168 294 29 0 0 chr21 31886765 31886800 -13020770 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2129 87 0 35 chr21 31886802 31887090 -13020480 - AluSx SINE Alu -34 278 1 1414 161 65 15 chr21 31887090 31887351 -13020219 - L1PA16 LINE L1 0 6166 5893 1748 138 72 45 chr21 31887643 31887709 -13019861 - MER7A DNA MER2_type -2698 340 277 2710 136 25 32 chr21 31887709 31887773 -13019797 - Tigger2a DNA MER2_type -2276 432 369 1722 179 3 3 chr21 31887773 31888064 -13019506 + AluJo SINE Alu 1 291 -21 2710 136 25 32 chr21 31888064 31888433 -13019137 - Tigger2a DNA MER2_type -2339 369 2 1748 138 72 45 chr21 31888433 31888699 -13018871 - MER7A DNA MER2_type -2761 277 1 187 259 0 35 chr21 31888835 31888893 -13018677 - L2 LINE L2 -1 3312 3257 1591 222 106 100 chr21 31888907 31889624 -13017946 + MER21B LTR ERV1 29 749 -114 1677 168 46 33 chr21 31889775 31890078 -13017492 - AluJb SINE Alu -5 307 1 6043 186 62 21 chr21 31890355 31891672 -13015898 - Charlie1a DNA MER1_type -2 1453 83 1938 120 120 20 chr21 31891672 31892013 -13015557 + THE1C LTR MaLR 1 375 0 352 208 52 13 chr21 31892016 31892093 -13015477 - Charlie1a DNA MER1_type -1375 80 1 2350 78 10 3 chr21 31893675 31893970 -13013600 - AluSp SINE Alu -16 297 1 1182 140 90 190 chr21 31894161 31894641 -13012929 - MSTB1 LTR MaLR 0 457 19 782 176 114 23 chr21 31894646 31894822 -13012748 + MIR SINE MIR 71 262 0 2426 81 0 0 chr21 31895052 31895349 -13012221 + AluSg SINE Alu 1 297 -13 3489 162 75 83 chr21 31895362 31896001 -13011569 + L1MB5 LINE L1 5304 5936 -238 2152 124 0 7 chr21 31896001 31896300 -13011270 - AluSx SINE Alu -15 297 1 3489 162 75 83 chr21 31896300 31896538 -13011032 + L1MB5 LINE L1 5936 6174 0 603 204 18 149 chr21 31896760 31896870 -13010700 + Charlie1a DNA MER1_type 7 62 -2699 1356 134 26 108 chr21 31896870 31897197 -13010373 - AluJb SINE Alu 0 302 1 603 204 18 149 chr21 31897197 31897360 -13010210 + Charlie1a DNA MER1_type 62 245 -2516 507 103 0 0 chr21 31897359 31897427 -13010143 + Charlie1a DNA MER1_type 1383 1450 -5 * 511 286 105 0 chr21 31897673 31897844 -13009726 - MIR SINE MIR -68 194 6 2164 112 7 0 chr21 31899166 31899452 -13008118 - AluSx SINE Alu -24 288 1 2312 87 0 19 chr21 31899498 31899810 -13007760 - AluSg SINE Alu -4 306 1 1498 213 27 3 chr21 31900149 31900445 -13007125 + AluJo SINE Alu 1 303 -9 463 177 61 77 chr21 31900481 31900662 -13006908 - Charlie1a DNA MER1_type -143 1312 1135 1402 263 144 6 chr21 31900696 31901319 -13006251 - MER20B DNA MER1_type -7 776 1 1655 103 122 8 chr21 31901340 31901626 -13005944 - AluSq SINE Alu 0 313 1 1448 81 59 0 chr21 31901675 31901887 -13005683 + AluSg/x SINE Alu 84 306 0 1992 70 103 7 chr21 31902030 31902302 -13005268 + AluSp SINE Alu 1 298 -15 3640 173 86 23 chr21 31902467 31902784 -13004786 + L1MA9 LINE L1 5413 5709 -603 2267 85 3 0 chr21 31902784 31903077 -13004493 - AluSc SINE Alu -14 295 2 3640 173 86 23 chr21 31903077 31903570 -13004000 + L1MA9 LINE L1 5709 6274 -38 190 273 91 0 chr21 31903626 31903681 -13003889 + MIR SINE MIR 79 138 -124 218 315 182 24 chr21 31903696 31903861 -13003709 + L2 LINE L2 3082 3272 0 561 228 0 0 chr21 31904463 31904564 -13003006 - MER5A DNA MER1_type -88 101 1 23 33 0 0 chr21 31904782 31904812 -13002758 + AT_rich Low_complexity Low_complexity 1 30 0 227 232 0 0 chr21 31904814 31904870 -13002700 - L1ME4a LINE L1 -5 6116 6061 2206 110 0 13 chr21 31905351 31905660 -13001910 + AluY SINE Alu 1 305 -6 274 234 133 16 chr21 31905763 31905951 -13001619 - L1P5 LINE L1 -678 5478 5269 1621 111 199 0 chr21 31906091 31906352 -13001218 - AluSq SINE Alu 0 313 1 815 164 0 0 chr21 31906475 31906597 -13000973 - FLAM_C SINE Alu -11 122 1 975 69 0 0 chr21 31906843 31906974 -13000596 - L1PA5 LINE L1 -252 5902 5772 2088 50 0 4 chr21 31906974 31907236 -13000334 + L1PA5 LINE L1 5891 6151 -3 1435 302 73 41 chr21 31907291 31907409 -13000161 + L2 LINE L2 2243 2356 -957 2087 140 3 0 chr21 31907409 31907709 -12999861 - AluSx SINE Alu -11 301 1 1435 302 73 41 chr21 31907709 31908555 -12999015 + L2 LINE L2 2356 3276 -37 1438 86 0 0 chr21 31908806 31908981 -12998589 - AluSg/x SINE Alu -36 274 100 2382 63 20 3 chr21 31909767 31910066 -12997504 - AluY SINE Alu -7 304 1 2227 125 3 0 chr21 31910388 31910699 -12996871 - AluSx SINE Alu 0 312 1 308 241 51 0 chr21 31910981 31911060 -12996510 - MLT1I LTR MaLR -3 406 324 293 238 0 16 chr21 31911100 31911163 -12996407 - MLT1I LTR MaLR -250 159 98 242 299 43 77 chr21 31911375 31911492 -12996078 + L2 LINE L2 3200 3312 -1 864 96 9 0 chr21 31911517 31911632 -12995938 + AluSg/x SINE Alu 182 297 -15 396 0 0 0 chr21 31911685 31911729 -12995841 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2369 72 10 3 chr21 31911732 31912036 -12995534 - AluY SINE Alu -5 306 1 2392 80 3 6 chr21 31912274 31912585 -12994985 - AluSp SINE Alu -3 310 1 1838 141 24 10 chr21 31912587 31912877 -12994693 - AluSx SINE Alu -5 307 14 373 178 197 33 chr21 31915029 31915181 -12992389 - L1MC5 LINE L1 -44 7917 7741 198 0 0 0 chr21 31915685 31915707 -12991863 + (A)n Simple_repeat Simple_repeat 1 22 0 181 161 0 0 chr21 31916265 31916296 -12991274 + MIR SINE MIR 156 186 -76 1110 104 0 7 chr21 31917117 31917261 -12990309 + AluSq/x SINE Alu 1 143 -170 1426 157 0 4 chr21 31917267 31917497 -12990073 + AluSq SINE Alu 85 313 0 184 356 0 0 chr21 31918551 31918624 -12988946 - L2 LINE L2 0 3313 3241 2023 106 32 51 chr21 31918870 31919181 -12988389 - AluSq SINE Alu -8 305 1 1492 168 48 31 chr21 31919461 31919752 -12987818 + AluJo SINE Alu 1 296 -16 2330 109 0 6 chr21 31919754 31920067 -12987503 + AluSx SINE Alu 1 311 -1 2150 131 20 7 chr21 31920070 31920375 -12987195 + AluSx SINE Alu 1 309 -3 2371 61 3 3 chr21 31920387 31920680 -12986890 + AluY SINE Alu 1 293 -18 1114 144 0 53 chr21 31920680 31920844 -12986726 + AluSg/x SINE Alu 134 288 -24 531 45 0 0 chr21 31920844 31920910 -12986660 + (TA)n Simple_repeat Simple_repeat 1 66 0 1114 144 0 53 chr21 31920910 31920933 -12986637 + AluSg/x SINE Alu 288 311 -1 272 354 108 0 chr21 31921187 31921317 -12986253 + L2 LINE L2 3107 3250 -22 1586 163 105 67 chr21 31921474 31921670 -12985900 - MER31B LTR ERV1 0 466 279 1477 202 89 11 chr21 31921670 31922017 -12985553 - MLT1A2 LTR MaLR 0 374 1 1586 163 105 67 chr21 31922017 31922269 -12985301 - MER31B LTR ERV1 -187 279 1 283 261 61 35 chr21 31922277 31922392 -12985178 - MIR SINE MIR -89 173 56 1990 102 6 84 chr21 31922841 31923164 -12984406 - AluSx SINE Alu -14 298 1 266 0 29 0 chr21 31923396 31923430 -12984140 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2007 145 0 0 chr21 31923442 31923725 -12983845 - AluSq SINE Alu -30 283 1 428 260 36 49 chr21 31924055 31924093 -12983477 - L1ME LINE L1 -301 5820 5783 1515 158 33 82 chr21 31924093 31924397 -12983173 - AluJo SINE Alu -23 289 1 428 260 36 49 chr21 31924397 31924581 -12982989 - L1ME LINE L1 -338 5783 5601 2303 83 13 0 chr21 31924607 31924907 -12982663 + AluSx SINE Alu 1 304 -8 1407 160 58 36 chr21 31924908 31925183 -12982387 - AluJo SINE Alu -31 281 1 243 297 0 0 chr21 31925220 31925284 -12982286 - L1ME LINE L1 -2236 5572 5509 1859 122 51 48 chr21 31927155 31927450 -12980120 - AluSx SINE Alu -16 296 1 21 0 0 0 chr21 31927701 31927722 -12979848 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr21 31929359 31929395 -12978175 + AT_rich Low_complexity Low_complexity 1 36 0 1668 164 51 0 chr21 31929519 31929793 -12977777 + AluJb SINE Alu 1 288 -24 1505 159 27 27 chr21 31929833 31930129 -12977441 - AluJo SINE Alu -16 296 1 2278 108 0 6 chr21 31930138 31930453 -12977117 - AluSq SINE Alu 0 313 1 375 173 12 25 chr21 31931009 31931020 -12976550 - AluY SINE Alu -3 298 288 351 0 0 0 chr21 31931020 31931059 -12976511 + (TG)n Simple_repeat Simple_repeat 2 40 0 375 173 12 25 chr21 31931059 31931128 -12976442 - AluY SINE Alu -13 288 219 1138 169 0 110 chr21 31931257 31931493 -12976077 - AluJb SINE Alu -102 210 1 2110 129 0 7 chr21 31931579 31931874 -12975696 + AluSx SINE Alu 1 293 -19 2031 117 3 0 chr21 31931880 31932162 -12975408 + AluSq SINE Alu 27 309 -4 2369 99 0 3 chr21 31932172 31932485 -12975085 - AluSx SINE Alu 0 312 1 1968 106 3 32 chr21 31932864 31933148 -12974422 + AluSx SINE Alu 1 276 -36 282 29 0 0 chr21 31933148 31933183 -12974387 + (TG)n Simple_repeat Simple_repeat 2 36 0 219 183 37 0 chr21 31933183 31933265 -12974305 + (TA)n Simple_repeat Simple_repeat 2 86 0 299 259 92 30 chr21 31933710 31933841 -12973729 + L1ME4a LINE L1 5968 6106 -15 249 300 78 0 chr21 31934587 31934677 -12972893 + MIR SINE MIR 113 209 -53 2219 70 3 73 chr21 31934875 31935205 -12972365 + AluY SINE Alu 1 307 -4 2414 84 0 16 chr21 31935450 31935760 -12971810 - AluY SINE Alu -6 305 1 2005 90 4 4 chr21 31936122 31936377 -12971193 - AluSx SINE Alu -47 265 11 225 65 0 0 chr21 31936807 31936838 -12970732 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1967 108 0 4 chr21 31936838 31937091 -12970479 - AluSx SINE Alu -60 252 1 626 165 39 24 chr21 31937357 31937484 -12970086 - AluJo SINE Alu -177 135 7 4573 237 85 28 chr21 31937498 31938451 -12969119 - L1ME1 LINE L1 -43 6517 5620 2417 63 10 0 chr21 31938451 31938754 -12968816 - AluSp SINE Alu -7 306 1 4573 237 85 28 chr21 31938754 31939407 -12968163 - L1ME1 LINE L1 -940 5620 5006 1387 103 243 0 chr21 31939407 31939650 -12967920 - AluSp SINE Alu -1 302 1 4573 237 85 28 chr21 31939650 31940140 -12967430 - L1ME1 LINE L1 -1554 5006 4545 2416 60 27 0 chr21 31940140 31940438 -12967132 - AluY SINE Alu -5 306 1 4573 237 85 28 chr21 31940438 31940867 -12966703 - L1ME1 LINE L1 -2015 4545 4142 2079 69 105 0 chr21 31940867 31941143 -12966427 - AluSc SINE Alu -4 305 1 4573 237 85 28 chr21 31941143 31941517 -12966053 - L1ME1 LINE L1 -2418 4142 3467 584 258 104 50 chr21 31941527 31941714 -12965856 - L1ME1 LINE L1 -3981 2559 2384 379 0 39 0 chr21 31941714 31941765 -12965805 + (TG)n Simple_repeat Simple_repeat 2 54 0 584 258 104 50 chr21 31941765 31942078 -12965492 - L1ME1 LINE L1 -4156 2384 2032 * 900 268 42 96 chr21 31942075 31942908 -12964662 - L1ME1 LINE L1 -5205 1325 538 2101 132 0 0 chr21 31942942 31943246 -12964324 - AluSq SINE Alu -9 304 1 2334 73 3 10 chr21 31943307 31943609 -12963961 - AluY SINE Alu -11 300 1 2302 83 10 3 chr21 31943897 31944198 -12963372 - AluSc SINE Alu -6 303 1 281 286 77 19 chr21 31944891 31945150 -12962420 + L1M4 LINE L1 3728 4001 -2145 1039 133 12 23 chr21 31945835 31946008 -12961562 + AluSg/x SINE Alu 135 305 -7 363 335 70 61 chr21 31946029 31946372 -12961198 + HAL1 LINE L1 103 448 -2059 538 255 26 52 chr21 31946552 31946783 -12960787 + HAL1 LINE L1 663 887 -1620 1819 77 68 0 chr21 31946784 31947018 -12960552 + AluSg SINE Alu 45 294 -16 257 212 24 24 chr21 31947095 31947180 -12960390 + HAL1 LINE L1 1045 1129 -1378 25 31 0 0 chr21 31947201 31947233 -12960337 + AT_rich Low_complexity Low_complexity 1 32 0 1961 160 0 10 chr21 31947253 31947565 -12960005 - AluJb SINE Alu -3 309 1 2229 70 0 40 chr21 31947635 31947935 -12959635 - AluY SINE Alu -23 288 1 486 294 0 41 chr21 31948143 31948313 -12959257 + MIR SINE MIR 86 248 -14 1523 191 80 19 chr21 31948378 31948702 -12958868 - MER2 DNA MER2_type 0 344 1 849 181 88 103 chr21 31948980 31949227 -12958343 - L1MC5 LINE L1 -39 7922 7684 2309 89 0 0 chr21 31949227 31949529 -12958041 + AluSx SINE Alu 1 302 -10 849 181 88 103 chr21 31949529 31949756 -12957814 - L1MC5 LINE L1 -277 7684 7455 191 310 17 0 chr21 31950214 31950272 -12957298 + L2 LINE L2 3152 3210 -62 474 170 61 27 chr21 31950673 31950820 -12956750 - L1MB7 LINE L1 0 6184 6033 2187 85 7 0 chr21 31951594 31951875 -12955695 + AluSx SINE Alu 13 295 -17 1833 106 4 4 chr21 31951969 31952215 -12955355 - AluSq SINE Alu -6 307 62 2484 51 0 0 chr21 31953401 31953693 -12953877 + AluY SINE Alu 1 292 -19 407 280 101 24 chr21 31953693 31953900 -12953670 + MIR SINE MIR 22 244 -18 264 30 0 0 chr21 31954152 31954185 -12953385 + (TG)n Simple_repeat Simple_repeat 2 34 0 626 215 82 51 chr21 31954669 31954864 -12952706 - L2 LINE L2 0 3313 3113 816 168 7 0 chr21 31954884 31955021 -12952549 - FLAM_C SINE Alu -4 139 2 1638 165 19 65 chr21 31955056 31955191 -12952379 + AluJo SINE Alu 1 141 -171 2376 100 6 0 chr21 31955191 31955502 -12952068 - AluSq SINE Alu 0 313 1 1638 165 19 65 chr21 31955502 31955675 -12951895 + AluJo SINE Alu 141 295 -17 2163 127 0 10 chr21 31956048 31956362 -12951208 - AluSx SINE Alu -1 311 1 1877 155 0 56 chr21 31956566 31956889 -12950681 - AluJo SINE Alu -6 306 2 532 291 82 58 chr21 31957705 31958035 -12949535 + L2 LINE L2 2353 2690 -624 2217 118 10 0 chr21 31958036 31958333 -12949237 - AluSx SINE Alu -12 300 1 1920 85 12 0 chr21 31958349 31958596 -12948974 - AluSc SINE Alu -59 250 1 865 288 92 13 chr21 31958596 31958988 -12948582 + L2 LINE L2 2889 3311 -2 775 254 69 62 chr21 31959170 31959237 -12948333 - L1MC4a LINE L1 -1363 6445 6380 2013 133 19 10 chr21 31959237 31959546 -12948024 + AluJo SINE Alu 1 312 0 775 254 69 62 chr21 31959546 31959561 -12948009 - L1MC4a LINE L1 -1428 6380 6367 2650 127 62 29 chr21 31959561 31960011 -12947559 - MER4C LTR ERV1 0 465 1 775 254 69 62 chr21 31960011 31960317 -12947253 - L1MC4a LINE L1 -1441 6367 6053 2472 87 0 3 chr21 31960458 31960768 -12946802 - AluSg1 SINE Alu 0 309 1 2036 119 37 0 chr21 31960770 31961064 -12946506 - AluSx SINE Alu -7 305 1 504 288 65 40 chr21 31961491 31961842 -12945728 + L1 LINE L1 3593 3952 -2194 3346 131 4 63 chr21 31961881 31962525 -12945045 - MER4B LTR ERV1 -5 774 1 325 370 79 21 chr21 31962635 31963016 -12944554 + L1 LINE L1 4110 4512 -1634 233 349 79 14 chr21 31963216 31963431 -12944139 + L1 LINE L1 4733 4961 -1185 314 258 40 33 chr21 31963667 31963818 -12943752 + L1M LINE L1 5275 5426 -748 295 0 0 0 chr21 31964327 31964359 -12943211 - U2 snRNA snRNA -156 32 1 821 164 20 0 chr21 31964702 31964848 -12942722 - L1MB7 LINE L1 -9 6175 6027 2026 109 32 7 chr21 31965789 31966072 -12941498 + AluSx SINE Alu 1 290 -22 1715 200 3 0 chr21 31966772 31967072 -12940498 + AluJo SINE Alu 1 301 -11 2013 135 3 0 chr21 31967636 31967941 -12939629 - AluSx SINE Alu 0 306 1 2056 143 0 13 chr21 31967969 31968277 -12939293 + AluJb SINE Alu 1 304 -8 314 336 42 28 chr21 31968317 31968460 -12939110 - MIR SINE MIR -55 207 63 2178 86 0 0 chr21 31968488 31968766 -12938804 - AluSg SINE Alu -30 280 3 1720 192 3 0 chr21 31968870 31969162 -12938408 - AluJo SINE Alu -19 293 1 1338 311 147 18 chr21 31969470 31970706 -12936864 - L2 LINE L2 -8 3305 1805 775 171 0 0 chr21 31970852 31970969 -12936601 + FLAM_C SINE Alu 2 118 -25 2479 77 0 10 chr21 31971679 31971989 -12935581 + AluY SINE Alu 1 307 -4 2370 81 0 0 chr21 31972127 31972423 -12935147 - AluSg SINE Alu -14 296 1 819 306 108 41 chr21 31973173 31973252 -12934318 + HAL1b LINE L1 12 84 -1264 2121 130 0 0 chr21 31973252 31973553 -12934017 + AluSx SINE Alu 1 301 -11 819 306 108 41 chr21 31973553 31974152 -12933418 + HAL1b LINE L1 84 735 -613 2725 234 49 60 chr21 31974380 31975454 -12932116 + L1MC5 LINE L1 6488 7532 -429 428 266 30 24 chr21 31975506 31975675 -12931895 + L1M4 LINE L1 73 242 -6300 267 304 0 13 chr21 31976053 31976132 -12931438 + L1M4 LINE L1 798 875 -5667 2994 239 63 60 chr21 31976192 31976627 -12930943 + L1M4 LINE L1 870 1302 -5523 1992 143 0 3 chr21 31976627 31976927 -12930643 + AluSq SINE Alu 1 299 -14 2994 239 63 60 chr21 31976927 31976940 -12930630 + L1M4 LINE L1 1302 1313 -5512 2065 135 0 0 chr21 31976940 31977237 -12930333 + AluSx SINE Alu 1 297 -15 2994 239 63 60 chr21 31977237 31978237 -12929333 + L1M4 LINE L1 1313 2500 -4325 1522 169 75 4 chr21 31978262 31978540 -12929030 + AluJo SINE Alu 10 307 -5 1524 177 0 90 chr21 31978626 31978959 -12928611 + AluJo SINE Alu 1 303 -9 1638 201 0 7 chr21 31979050 31979358 -12928212 - AluJo SINE Alu -6 306 1 663 189 21 149 chr21 31979367 31979429 -12928141 - L1MC5 LINE L1 -795 7166 7098 2428 97 3 0 chr21 31979429 31979738 -12927832 + AluSx SINE Alu 1 310 -2 663 189 21 149 chr21 31979738 31980057 -12927513 - L1MC5 LINE L1 -863 7098 6834 531 141 51 2 chr21 31982672 31982908 -12924662 + AluJ SINE Alu 1 296 -16 490 280 161 0 chr21 31983065 31983251 -12924319 - MIR SINE MIR -38 224 9 227 308 185 18 chr21 31983334 31983527 -12924043 - MIR SINE MIR -9 253 30 2434 91 0 3 chr21 31983549 31983858 -12923712 + AluSg SINE Alu 1 308 -2 2058 79 76 21 chr21 31986090 31986380 -12921190 + AluSx SINE Alu 1 306 -6 187 283 22 0 chr21 31986639 31986685 -12920885 - L3 LINE CR1 -11 1566 1520 2285 103 3 0 chr21 31986842 31987134 -12920436 - AluSq SINE Alu -20 293 1 1653 157 14 35 chr21 31987944 31988231 -12919339 - AluJo SINE Alu -11 301 21 1511 174 36 0 chr21 31988231 31988483 -12919087 - AluJb SINE Alu -50 262 1 1066 260 14 0 chr21 31989129 31989348 -12918222 - MER58A DNA MER1_type -2 222 1 356 324 56 0 chr21 31989362 31989470 -12918100 - MIR SINE MIR -62 146 33 534 239 172 45 chr21 31989782 31989886 -12917684 + L1ME3A LINE L1 5650 5739 -431 2208 98 3 28 chr21 31989886 31990203 -12917367 + AluSx SINE Alu 1 309 -3 534 239 172 45 chr21 31990203 31990496 -12917074 + L1ME3A LINE L1 5739 6144 -26 190 288 153 18 chr21 31990651 31990762 -12916808 - MIR3 SINE MIR -73 135 10 1583 177 34 10 chr21 31991141 31991435 -12916135 - AluJb SINE Alu -11 301 1 405 250 75 114 chr21 31992221 31992328 -12915242 - L1MC5 LINE L1 -51 7910 7800 2408 89 7 0 chr21 31992328 31992632 -12914938 - AluSp SINE Alu -7 306 1 405 250 75 114 chr21 31992632 31992750 -12914820 - L1MC5 LINE L1 -161 7800 7679 1709 157 21 0 chr21 31992750 31993030 -12914540 - AluSx SINE Alu -26 286 1 405 250 75 114 chr21 31993030 31993259 -12914311 - L1MC5 LINE L1 -282 7679 7473 216 0 0 0 chr21 31993297 31993321 -12914249 + (A)n Simple_repeat Simple_repeat 1 24 0 357 226 104 9 chr21 31993343 31993449 -12914121 - L1MC5 LINE L1 -516 7445 7330 1187 167 5 41 chr21 31993449 31993670 -12913900 - MER20B DNA MER1_type 0 219 7 239 244 34 67 chr21 31993704 31993823 -12913747 - L1MC5 LINE L1 -650 7311 7197 21 36 0 0 chr21 31994225 31994253 -12913317 + AT_rich Low_complexity Low_complexity 1 28 0 546 205 179 15 chr21 31994542 31994737 -12912833 + L1ME1 LINE L1 5939 6165 -1 870 250 42 9 chr21 31995054 31995270 -12912300 + MER58A DNA MER1_type 2 224 0 1005 182 116 13 chr21 31995298 31995523 -12912047 + AluJo SINE Alu 1 248 -64 368 213 27 27 chr21 31995591 31995666 -12911904 + AluJ/FRAM SINE Alu 216 290 -12 2365 81 0 7 chr21 31996958 31997283 -12910287 + AluSq SINE Alu 6 313 0 220 258 0 0 chr21 31997477 31997539 -12910031 - MIR SINE MIR -21 241 180 2301 111 3 0 chr21 31998342 31998648 -12908922 - AluSx SINE Alu -5 307 1 253 345 0 11 chr21 31999363 31999450 -12908120 - L2 LINE L2 0 3272 3187 1529 174 135 18 chr21 31999458 31999510 -12908060 - L1MB5 LINE L1 0 6174 6129 850 238 134 53 chr21 31999510 31999767 -12907803 - MLT1C LTR MaLR 0 467 232 2152 101 3 14 chr21 31999767 32000064 -12907506 - AluSq SINE Alu -18 295 2 850 238 134 53 chr21 32000064 32000124 -12907446 - MLT1C LTR MaLR -235 232 178 2374 92 3 0 chr21 32000124 32000430 -12907140 - AluSp SINE Alu -6 307 1 850 238 134 53 chr21 32000430 32000543 -12907027 - MLT1C LTR MaLR -289 178 1 1529 174 135 18 chr21 32000543 32000817 -12906753 - L1MB5 LINE L1 -45 6129 5810 2233 100 7 7 chr21 32000832 32001133 -12906437 - AluSx SINE Alu -11 301 1 201 313 0 12 chr21 32002312 32002392 -12905178 + GA-rich Low_complexity Low_complexity 2 80 0 2143 152 93 5 chr21 32002485 32002892 -12904678 - L1MB7 LINE L1 -64 6120 5678 2451 81 0 10 chr21 32003065 32003375 -12904195 - AluSx SINE Alu -5 307 1 364 234 43 0 chr21 32003434 32003528 -12904042 - U6 snRNA snRNA -5 102 5 667 180 0 72 chr21 32003591 32003730 -12903840 + FLAM_C SINE Alu 3 131 -2 2351 88 0 0 chr21 32003752 32004047 -12903523 - AluSx SINE Alu -17 295 1 186 326 98 11 chr21 32005231 32005323 -12902247 - L2 LINE L2 0 3313 3214 974 260 83 31 chr21 32005351 32005822 -12901748 - L2 LINE L2 -8 3305 2765 5687 206 144 74 chr21 32006045 32006337 -12901233 - L1ME2 LINE L1 -263 5901 5631 1571 152 56 33 chr21 32006337 32006640 -12900930 + AluJo SINE Alu 1 310 -2 5687 206 144 74 chr21 32006640 32008634 -12898936 - L1ME2 LINE L1 -533 5631 3246 2822 13 0 0 chr21 32008634 32008945 -12898625 - AluYa5 SINE Alu 0 311 1 5687 206 144 74 chr21 32008945 32009784 -12897786 - L1ME2 LINE L1 -2918 3246 2467 1901 112 8 0 chr21 32009898 32010156 -12897414 - AluSx SINE Alu -9 303 44 2172 129 7 0 chr21 32011643 32011946 -12895624 - AluSx SINE Alu -7 305 1 2505 58 0 0 chr21 32012811 32013102 -12894468 + AluY SINE Alu 1 291 -20 1622 150 66 17 chr21 32014259 32014378 -12893192 + AluJb SINE Alu 1 113 -199 396 0 0 0 chr21 32014378 32014422 -12893148 + (CA)n Simple_repeat Simple_repeat 2 45 0 1622 150 66 17 chr21 32014422 32014589 -12892981 + AluJb SINE Alu 113 301 -11 2037 144 0 7 chr21 32018516 32018815 -12888755 + AluSx SINE Alu 1 297 -15 530 160 106 0 chr21 32018908 32019002 -12888568 + FAM SINE Alu 37 140 -45 32 43 0 0 chr21 32019010 32019056 -12888514 + AT_rich Low_complexity Low_complexity 1 46 0 43 20 0 0 chr21 32020315 32020365 -12887205 + AT_rich Low_complexity Low_complexity 1 50 0 223 273 0 36 chr21 32022208 32022263 -12885307 - MIR SINE MIR -126 82 30 1689 82 0 0 chr21 32022269 32022489 -12885081 - AluY SINE Alu -9 302 83 215 226 0 16 chr21 32022935 32022997 -12884573 + CT-rich Low_complexity Low_complexity 3 63 0 2222 91 3 3 chr21 32025236 32025521 -12882049 + AluSc SINE Alu 1 285 -24 2381 75 0 34 chr21 32026018 32026338 -12881232 - AluSg SINE Alu -1 309 1 630 234 96 16 chr21 32026613 32026801 -12880769 + MIR SINE MIR 6 208 -54 1923 185 0 6 chr21 32028154 32028467 -12879103 - AluJo SINE Alu -1 311 1 186 336 126 0 chr21 32028769 32028912 -12878658 - L2 LINE L2 -8 3264 3104 240 193 30 37 chr21 32030297 32030432 -12877138 + (TA)n Simple_repeat Simple_repeat 1 134 0 533 165 73 0 chr21 32030881 32030990 -12876580 - AluSg/x SINE Alu -11 298 182 1416 153 0 25 chr21 32031004 32031239 -12876331 - AluJb SINE Alu -83 229 1 1308 142 24 28 chr21 32031533 32031745 -12875825 - AluJb SINE Alu -15 297 87 576 304 57 51 chr21 32033043 32033550 -12874020 + L1ME4a LINE L1 5287 5796 -2012 232 289 89 30 chr21 32033594 32033729 -12873841 + L1ME4a LINE L1 5879 6021 -100 23 86 0 0 chr21 32033769 32033827 -12873743 + AT_rich Low_complexity Low_complexity 1 58 0 1339 122 47 0 chr21 32034830 32035043 -12872527 + MER30 DNA MER1_type 8 230 0 283 279 124 23 chr21 32035093 32035222 -12872348 - MER5B DNA MER1_type -36 142 1 522 153 136 34 chr21 32035571 32035689 -12871881 + MER58A DNA MER1_type 26 155 0 2032 45 0 4 chr21 32035729 32035975 -12871595 - AluY SINE Alu -2 309 65 2401 40 3 27 chr21 32035989 32036287 -12871283 + AluY SINE Alu 1 291 -20 1767 127 58 0 chr21 32037432 32037691 -12869879 - AluSx SINE Alu -38 274 1 2700 13 0 7 chr21 32037971 32038274 -12869296 + AluYb8 SINE Alu 1 301 -17 2376 91 0 0 chr21 32038370 32038667 -12868903 + AluSq SINE Alu 1 297 -16 643 310 102 19 chr21 32038670 32038886 -12868684 - MIR SINE MIR -21 241 8 21 0 0 0 chr21 32039627 32039648 -12867922 + AT_rich Low_complexity Low_complexity 1 21 0 2227 96 7 0 chr21 32039868 32040159 -12867411 - AluSp SINE Alu -20 293 1 2019 163 0 0 chr21 32042560 32042866 -12864704 - AluJb SINE Alu -6 306 1 241 159 130 14 chr21 32043148 32043217 -12864353 - MIR SINE MIR -62 200 124 1169 131 0 23 chr21 32043243 32043419 -12864151 - AluSg/x SINE Alu -7 305 134 2141 133 0 0 chr21 32043420 32043720 -12863850 - AluSx SINE Alu -12 300 1 195 188 0 0 chr21 32043797 32043845 -12863725 + T-rich Low_complexity Low_complexity 1 48 0 223 356 121 13 chr21 32044271 32044510 -12863060 - L2 LINE L2 -116 3156 2892 1898 112 23 40 chr21 32045974 32046277 -12861293 + AluSx SINE Alu 1 298 -14 508 244 35 0 chr21 32046513 32046628 -12860942 - MIR SINE MIR -111 151 33 343 309 43 21 chr21 32047299 32047532 -12860038 + L2 LINE L2 2832 3069 -203 2681 3 0 0 chr21 32049768 32050083 -12857487 + AluYb8 SINE Alu 1 315 0 318 316 172 29 chr21 32050966 32051140 -12856430 + MIR SINE MIR 33 231 -31 21 0 0 0 chr21 32051554 32051575 -12855995 + AT_rich Low_complexity Low_complexity 1 21 0 192 333 33 0 chr21 32053158 32053218 -12854352 + L2 LINE L2 3211 3272 0 1945 141 3 3 chr21 32057185 32057469 -12850101 + AluSx SINE Alu 1 284 -28 253 0 0 0 chr21 32057469 32057497 -12850073 + (TAAAA)n Simple_repeat Simple_repeat 2 140 0 267 241 0 0 chr21 32058659 32058742 -12848828 + CT-rich Low_complexity Low_complexity 1 83 0 367 343 71 0 chr21 32060336 32060575 -12846995 + L1MC4a LINE L1 7078 7333 -475 1010 236 53 91 chr21 32060616 32061135 -12846435 + L1MC4 LINE L1 7555 7995 0 189 171 0 0 chr21 32063073 32063108 -12844462 + (TG)n Simple_repeat Simple_repeat 1 35 0 262 249 309 18 chr21 32063487 32063652 -12843918 + MIR SINE MIR 35 247 -15 2499 59 0 16 chr21 32063653 32063960 -12843610 + AluY SINE Alu 1 302 -9 216 0 0 0 chr21 32063983 32064007 -12843563 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2287 89 0 0 chr21 32065716 32066025 -12841545 + AluSx SINE Alu 1 309 0 36 53 0 0 chr21 32067381 32067438 -12840132 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr21 32068466 32068487 -12839083 + AT_rich Low_complexity Low_complexity 1 21 0 316 296 40 120 chr21 32069146 32069571 -12837999 - L2 LINE L2 -1 3312 2922 668 197 8 0 chr21 32069919 32070046 -12837524 + MER20 DNA MER1_type 88 215 -4 2195 120 13 0 chr21 32070421 32070729 -12836841 - AluSx SINE Alu 0 312 1 1161 81 0 0 chr21 32070729 32070865 -12836705 - AluSq/x SINE Alu -177 136 1 226 169 215 0 chr21 32071354 32071419 -12836151 + MER116 DNA Mariner 1 79 -1 1882 66 163 0 chr21 32072005 32072262 -12835308 - AluY SINE Alu -12 299 1 315 0 0 0 chr21 32072563 32072598 -12834972 + (TG)n Simple_repeat Simple_repeat 1 35 0 206 345 0 23 chr21 32073140 32073227 -12834343 - MIR3 SINE MIR -33 175 91 622 200 32 13 chr21 32073782 32073934 -12833636 + MIR SINE MIR 8 168 -40 220 230 127 48 chr21 32075247 32075412 -12832158 - L2 LINE L2 -217 3096 2919 371 264 130 23 chr21 32075432 32075648 -12831922 + L2 LINE L2 2609 2847 -467 202 261 33 54 chr21 32075626 32075718 -12831852 + L2 LINE L2 2965 3054 -218 * 205 309 59 0 chr21 32076468 32076536 -12831034 + L2 LINE L2 3139 3210 -62 345 286 9 9 chr21 32076972 32077077 -12830493 + L2 LINE L2 3116 3220 -93 587 288 12 0 chr21 32077933 32078093 -12829477 - MER5B DNA MER1_type -14 164 3 1377 224 97 3 chr21 32078196 32078548 -12829022 + MLT1B LTR MaLR 1 385 -5 520 213 219 25 chr21 32078580 32078740 -12828830 + MIR SINE MIR 20 210 -52 2418 97 10 0 chr21 32079026 32079334 -12828236 + AluSx SINE Alu 1 311 -1 2344 116 0 0 chr21 32079351 32079652 -12827918 + AluSx SINE Alu 1 301 -11 1498 88 22 0 chr21 32079652 32079880 -12827690 + L1MA2 LINE L1 6072 6304 0 2613 83 0 0 chr21 32081454 32081766 -12825804 - AluSx SINE Alu 0 312 1 2067 143 0 13 chr21 32081797 32082155 -12825415 - AluJo SINE Alu 0 354 1 24 0 0 0 chr21 32082161 32082185 -12825385 + AT_rich Low_complexity Low_complexity 1 24 0 214 236 36 18 chr21 32082192 32082247 -12825323 + L2 LINE L2 3139 3194 -78 313 269 48 39 chr21 32084036 32084140 -12823430 + L2 LINE L2 3209 3313 0 549 217 155 19 chr21 32085266 32085427 -12822143 - MER5A DNA MER1_type -6 183 1 473 271 30 0 chr21 32086058 32086191 -12821379 + MIR SINE MIR 21 157 -105 1063 231 92 35 chr21 32086321 32086689 -12820881 - MLT1B LTR MaLR 0 390 2 189 280 24 72 chr21 32087197 32087322 -12820248 + MIR SINE MIR 30 148 -60 326 328 124 51 chr21 32087737 32087914 -12819656 - MER91B DNA MER1_type 0 190 1 494 210 196 14 chr21 32089365 32089508 -12818062 + MIR3 SINE MIR 17 185 -23 209 259 42 4 chr21 32089985 32090084 -12817486 + MIR SINE MIR 32 138 -70 2400 112 0 0 chr21 32090092 32090405 -12817165 + AluSq SINE Alu 1 313 0 266 315 43 0 chr21 32090707 32090799 -12816771 - MIR SINE MIR -69 139 44 2511 62 0 43 chr21 32091732 32092016 -12815554 + AluY SINE Alu 1 271 -40 207 0 0 0 chr21 32092016 32092039 -12815531 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2511 62 0 43 chr21 32092039 32092079 -12815491 + AluY SINE Alu 271 311 0 1143 139 0 12 chr21 32092083 32092256 -12815314 + AluSg/x SINE Alu 136 306 -6 522 270 29 0 chr21 32092760 32092897 -12814673 + MIR SINE MIR 14 154 -108 1897 114 103 0 chr21 32093441 32093713 -12813857 + AluSx SINE Alu 1 300 -12 906 111 0 15 chr21 32097586 32097721 -12809849 + FLAM_C SINE Alu 1 133 0 2279 87 19 0 chr21 32097736 32098057 -12809513 - pTR5 LTR ERV1 -2046 392 66 322 247 21 0 chr21 32098057 32098154 -12809416 - LTR30 LTR ERV1 -80 642 544 3560 140 48 32 chr21 32098154 32098951 -12808619 - pTR5 LTR ERV1 -413 2025 741 348 127 0 18 chr21 32099047 32099102 -12808468 - MER4C LTR ERV1 -72 393 340 2280 115 19 16 chr21 32099214 32099588 -12807982 - THE1C LTR MaLR 0 375 1 229 291 0 0 chr21 32099675 32099730 -12807840 + MIR3 SINE MIR 116 170 -38 1484 207 41 39 chr21 32099778 32100141 -12807429 - L1MC4 LINE L1 -1221 6821 6458 322 332 47 43 chr21 32100389 32100600 -12806970 + L1M4 LINE L1 4131 4342 -1804 1011 161 0 19 chr21 32100713 32100868 -12806702 + AluSx SINE Alu 3 154 -158 374 196 10 41 chr21 32100868 32100965 -12806605 - LTR18B LTR ERVL -14 600 507 301 255 53 32 chr21 32100969 32101063 -12806507 - LTR18B LTR ERVL -518 96 1 1099 146 0 0 chr21 32101063 32101221 -12806349 + AluSx SINE Alu 148 305 -7 241 209 126 65 chr21 32101237 32101441 -12806129 + L1MC4a LINE L1 5730 5899 -222 535 116 0 0 chr21 32101441 32101527 -12806043 + AluJ/FRAM SINE Alu 227 312 0 2415 96 3 0 chr21 32101529 32101832 -12805738 + AluSc SINE Alu 1 304 -5 747 199 181 5 chr21 32101864 32102085 -12805485 + MIR SINE MIR 2 261 -1 522 234 198 28 chr21 32102107 32102359 -12805211 + L1ME4a LINE L1 5378 5672 -449 1926 138 0 0 chr21 32102587 32102863 -12804707 - AluSx SINE Alu 0 312 37 265 202 75 0 chr21 32102884 32102978 -12804592 + L1ME4a LINE L1 6018 6118 -3 513 252 143 7 chr21 32103060 32103207 -12804363 - MER5B DNA MER1_type -1 177 11 485 287 45 106 chr21 32103504 32103656 -12803914 - MIR SINE MIR -2 260 100 2008 127 0 4 chr21 32103656 32103931 -12803639 + AluSx SINE Alu 1 274 -38 485 287 45 106 chr21 32103931 32103946 -12803624 - MIR SINE MIR -162 100 86 2455 63 23 7 chr21 32103946 32104249 -12803321 + AluSq SINE Alu 1 308 -5 485 287 45 106 chr21 32104249 32104345 -12803225 - MIR SINE MIR -176 86 12 2470 94 0 0 chr21 32104707 32105014 -12802556 - AluSc SINE Alu -2 307 1 266 196 27 125 chr21 32105703 32105751 -12801819 - L1MEd LINE L1 -5122 997 965 2328 98 3 0 chr21 32105751 32106047 -12801523 - AluSx SINE Alu -15 297 1 266 196 27 125 chr21 32106047 32106110 -12801460 - L1MEd LINE L1 -5154 965 897 1020 111 18 0 chr21 32106123 32106146 -12801424 + (TTTC)n Simple_repeat Simple_repeat 1 197 0 1020 111 18 0 chr21 32106146 32106317 -12801253 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 979 192 6 17 chr21 32106421 32106598 -12800972 - AluJb SINE Alu -3 309 135 571 330 124 66 chr21 32106601 32106686 -12800884 - L1MEd LINE L1 -5215 904 825 1218 179 129 15 chr21 32106686 32106949 -12800621 + AluJo SINE Alu 1 293 -19 571 330 124 66 chr21 32106949 32107127 -12800443 - L1MEd LINE L1 -5294 825 659 2229 116 3 0 chr21 32107127 32107420 -12800150 - AluSx SINE Alu -18 294 1 571 330 124 66 chr21 32107420 32107893 -12799677 - L1MEd LINE L1 -5460 659 108 324 0 0 0 chr21 32107893 32107929 -12799641 + (TG)n Simple_repeat Simple_repeat 1 36 0 571 330 124 66 chr21 32107929 32108042 -12799528 - L1MEd LINE L1 -6011 108 3 1857 169 17 7 chr21 32108056 32108076 -12799494 - AluJb SINE Alu -7 305 287 354 23 0 0 chr21 32108076 32108119 -12799451 + (TG)n Simple_repeat Simple_repeat 2 44 0 1857 169 17 7 chr21 32108119 32108400 -12799170 - AluJb SINE Alu -25 287 1 206 333 0 0 chr21 32108497 32108557 -12799013 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 380 333 54 18 chr21 32108840 32109008 -12798562 - L2 LINE L2 -2 3270 3097 2010 127 0 10 chr21 32109133 32109432 -12798138 + AluJo SINE Alu 1 296 -16 2043 122 0 0 chr21 32109753 32110047 -12797523 - AluSx SINE Alu -18 294 1 2426 66 0 0 chr21 32111193 32111496 -12796074 + AluY SINE Alu 1 303 -8 1293 191 126 0 chr21 32111766 32112043 -12795527 + AluJo SINE Alu 1 312 0 1826 147 0 32 chr21 32113962 32114276 -12793294 - AluJo SINE Alu -7 305 2 207 0 0 0 chr21 32114277 32114300 -12793270 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1965 128 0 16 chr21 32115992 32116296 -12791274 + AluSx SINE Alu 1 299 -13 1954 137 0 3 chr21 32117107 32117400 -12790170 + AluJb SINE Alu 5 296 -16 265 213 107 13 chr21 32117566 32117641 -12789929 - MIR SINE MIR -180 82 1 1867 143 23 7 chr21 32117668 32117975 -12789595 - AluJb SINE Alu 0 312 1 189 0 0 0 chr21 32122007 32122028 -12785542 + (ATTTG)n Simple_repeat Simple_repeat 2 22 0 2188 101 0 0 chr21 32123375 32123673 -12783897 + AluSx SINE Alu 1 298 -14 400 58 0 0 chr21 32124190 32124242 -12783328 + MADE1 DNA Mariner 1 52 -28 771 213 3 0 chr21 32125465 32125795 -12781775 + (TG)n Simple_repeat Simple_repeat 1 331 0 773 224 23 0 chr21 32125895 32126069 -12781501 - MER45A DNA AcHobo 0 178 1 216 0 0 0 chr21 32129834 32129858 -12777712 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1825 163 14 0 chr21 32130640 32130929 -12776641 + AluJo SINE Alu 1 293 -19 259 230 155 50 chr21 32131126 32131287 -12776283 - L1ME4a LINE L1 0 6121 5944 235 133 0 22 chr21 32131304 32131349 -12776221 - Alu SINE Alu -7 294 251 1431 182 20 17 chr21 32131464 32131760 -12775810 + AluJb SINE Alu 1 297 -15 328 279 66 0 chr21 32132247 32132369 -12775201 - MLT1J LTR MaLR -311 200 71 190 157 0 137 chr21 32133062 32133113 -12774457 + MIR SINE MIR 107 150 -58 24 32 0 0 chr21 32133860 32133891 -12773679 + AT_rich Low_complexity Low_complexity 1 31 0 2056 124 0 0 chr21 32134818 32135108 -12772462 - AluSx SINE Alu -22 290 1 584 300 25 42 chr21 32135327 32135564 -12772006 - MIR SINE MIR -17 245 13 2134 109 6 3 chr21 32135698 32136009 -12771561 + AluSx SINE Alu 1 312 0 559 246 155 35 chr21 32136445 32136677 -12770893 + MIR SINE MIR 2 261 -1 1647 160 10 14 chr21 32136773 32137067 -12770503 + AluJb SINE Alu 1 293 -19 1358 165 63 4 chr21 32137639 32137893 -12769677 + AluJo SINE Alu 14 282 -30 1424 157 15 71 chr21 32137937 32138261 -12769309 + AluJb SINE Alu 1 306 -6 1892 142 0 3 chr21 32138499 32138788 -12768782 + AluJb SINE Alu 7 294 -18 554 244 154 19 chr21 32138945 32139101 -12768469 - MER5A DNA MER1_type 0 189 13 1889 119 52 0 chr21 32139347 32139633 -12767937 - AluSx SINE Alu -11 301 1 1927 111 20 7 chr21 32141730 32142028 -12765542 - AluSg SINE Alu -6 304 3 26 0 0 0 chr21 32142538 32142564 -12765006 + AT_rich Low_complexity Low_complexity 1 26 0 474 227 45 0 chr21 32142633 32142743 -12764827 + MIR3 SINE MIR 76 190 -18 379 287 108 7 chr21 32143083 32143248 -12764322 + MIR3 SINE MIR 4 148 -60 2165 106 0 0 chr21 32143852 32144145 -12763425 - AluSg SINE Alu -17 293 1 299 297 40 40 chr21 32145296 32145397 -12762173 + MIR SINE MIR 42 142 -120 2858 132 24 2 chr21 32146340 32146803 -12760767 - MER31A LTR ERV1 0 485 13 1956 125 24 0 chr21 32147267 32147554 -12760016 - AluSx SINE Alu -18 294 1 598 217 53 7 chr21 32147710 32147862 -12759708 + MIR SINE MIR 89 247 -15 1508 183 7 23 chr21 32147869 32148170 -12759400 - AluJb SINE Alu -14 298 3 271 282 55 43 chr21 32148306 32148469 -12759101 - L1ME LINE L1 -252 5869 5705 233 49 0 0 chr21 32148505 32148546 -12759024 - AluSx SINE Alu -1 302 262 1500 106 0 10 chr21 32148546 32148753 -12758817 - AluSx SINE Alu -107 205 1 1656 136 18 86 chr21 32148753 32148863 -12758707 - 7SLRNA srpRNA srpRNA -4 316 200 2022 123 0 0 chr21 32148863 32149179 -12758391 - AluSx SINE Alu 0 316 1 1656 136 18 86 chr21 32149179 32149405 -12758165 - 7SLRNA srpRNA srpRNA -120 200 2 364 345 36 6 chr21 32149411 32149576 -12757994 - L1ME LINE L1 -440 5681 5512 377 254 95 8 chr21 32149637 32149763 -12757807 - L2 LINE L2 -3 3310 3174 1818 163 10 0 chr21 32149902 32150208 -12757362 - AluJb SINE Alu -2 310 2 566 160 0 11 chr21 32150448 32150542 -12757028 - AluY SINE Alu -223 95 3 1602 144 46 26 chr21 32151210 32151516 -12756054 + AluSx SINE Alu 1 312 0 2073 101 0 0 chr21 32151848 32152126 -12755444 + AluSx SINE Alu 16 293 -19 1578 175 0 14 chr21 32152141 32152438 -12755132 - AluJb SINE Alu -19 293 1 251 234 79 117 chr21 32152451 32152658 -12754912 + L1ME LINE L1 5615 5811 -310 1550 146 0 45 chr21 32152658 32152945 -12754625 + AluJb SINE Alu 21 294 -18 251 234 79 117 chr21 32152945 32153002 -12754568 + L1ME LINE L1 5811 5869 -252 196 306 0 0 chr21 32153232 32153281 -12754289 + L3 LINE CR1 1516 1564 -13 880 139 6 13 chr21 32153388 32153546 -12754024 - AluJb SINE Alu -19 293 137 596 268 121 0 chr21 32155000 32155198 -12752372 + MIR SINE MIR 27 248 -14 2055 103 0 20 chr21 32155305 32155605 -12751965 - AluSx SINE Alu -18 294 1 27870 30 19 1 chr21 32155641 32161675 -12745895 - L1PA2 LINE L1 0 6155 6 201 74 0 0 chr21 32162020 32162047 -12745523 + (A)n Simple_repeat Simple_repeat 1 27 0 1745 186 24 0 chr21 32162947 32163237 -12744333 - AluJb SINE Alu -15 297 1 204 218 18 18 chr21 32163778 32163833 -12743737 - MER5B DNA MER1_type -9 169 115 2182 109 3 0 chr21 32163862 32164168 -12743402 - AluSx SINE Alu 0 307 1 21 0 0 0 chr21 32164168 32164189 -12743381 + AT_rich Low_complexity Low_complexity 1 21 0 2202 124 3 3 chr21 32164486 32164793 -12742777 - AluSx SINE Alu -5 307 1 1372 150 12 20 chr21 32165103 32165356 -12742214 - L1MA9 LINE L1 -5 6307 6057 2105 111 11 0 chr21 32165432 32165743 -12741827 - AluSx SINE Alu 0 314 1 1969 157 3 13 chr21 32166087 32166393 -12741177 - AluJb SINE Alu -9 303 1 280 275 114 18 chr21 32166401 32166568 -12741002 - MER5A DNA MER1_type -2 187 5 564 232 20 20 chr21 32166887 32167038 -12740532 - MIR SINE MIR -40 222 72 2351 83 0 188 chr21 32167620 32167667 -12739903 + MER57B LTR ERV1 1 55 -379 2218 118 0 29 chr21 32167667 32167980 -12739590 - AluSx SINE Alu -8 304 1 2351 83 0 188 chr21 32167980 32168464 -12739106 + MER57B LTR ERV1 55 432 -2 1055 159 31 20 chr21 32168519 32168714 -12738856 - L1MB7 LINE L1 -12 6172 5976 183 176 0 0 chr21 32168783 32168817 -12738753 + L2 LINE L2 3227 3260 -12 2346 99 0 0 chr21 32168890 32169183 -12738387 + AluSx SINE Alu 3 295 -17 2084 140 45 62 chr21 32169889 32170028 -12737542 + L1MB7 LINE L1 5725 5865 -319 2009 110 0 60 chr21 32170028 32170345 -12737225 + AluSq SINE Alu 1 298 -15 2084 140 45 62 chr21 32170345 32170654 -12736916 + L1MB7 LINE L1 5865 6165 -19 280 300 27 9 chr21 32170861 32170971 -12736599 - MIR3 SINE MIR 0 208 97 2231 92 0 48 chr21 32171514 32171829 -12735741 + AluSc SINE Alu 1 300 -9 461 234 71 58 chr21 32172018 32172244 -12735326 - L1ME4a LINE L1 -12 6109 5881 21 36 0 0 chr21 32172244 32172272 -12735298 + AT_rich Low_complexity Low_complexity 1 28 0 387 220 80 0 chr21 32172604 32172704 -12734866 + L2 LINE L2 3206 3313 0 2028 135 36 0 chr21 32173090 32173371 -12734199 - AluSx SINE Alu -21 291 1 493 292 35 6 chr21 32173568 32173739 -12733831 - MIR SINE MIR -1 261 86 6316 128 31 19 chr21 32174035 32174072 -12733498 + L1MC1 LINE L1 5277 5312 -1021 1866 148 0 60 chr21 32174072 32174404 -12733166 + AluJb SINE Alu 1 312 0 6316 128 31 19 chr21 32174404 32175405 -12732165 + L1MC1 LINE L1 5312 6327 -6 765 198 33 145 chr21 32175442 32175492 -12732078 + L1MC5 LINE L1 7606 7660 -301 2350 113 0 3 chr21 32175492 32175803 -12731767 + AluSx SINE Alu 1 310 -2 765 198 33 145 chr21 32175803 32175877 -12731693 + L1MC5 LINE L1 7660 7741 -220 652 175 108 0 chr21 32175877 32175997 -12731573 + FLAM_A SINE Alu 1 133 0 765 198 33 145 chr21 32175997 32176230 -12731340 + L1MC5 LINE L1 7741 7924 -37 2136 107 31 0 chr21 32176540 32176958 -12730612 - AluSx SINE Alu 0 427 1 1652 141 7 45 chr21 32179795 32180085 -12727485 - AluJo SINE Alu -19 293 15 344 262 47 0 chr21 32180744 32180851 -12726719 + MIR SINE MIR 36 147 -115 184 143 36 0 chr21 32180853 32180909 -12726661 + (TA)n Simple_repeat Simple_repeat 1 58 0 44 20 0 0 chr21 32180938 32180989 -12726581 + AT_rich Low_complexity Low_complexity 1 51 0 248 203 34 0 chr21 32180989 32181048 -12726522 - L1MC4 LINE L1 -1338 6704 6644 304 200 0 0 chr21 32181051 32181116 -12726454 + MIR SINE MIR 169 233 -29 627 314 16 29 chr21 32181960 32182205 -12725365 + L1ME LINE L1 440 681 -5849 * 2125 227 56 75 chr21 32182203 32182414 -12725156 - L1ME4a LINE L1 -414 5750 5537 2089 145 0 0 chr21 32182414 32182718 -12724852 + AluJo SINE Alu 1 304 -8 2125 227 56 75 chr21 32182718 32182824 -12724746 - L1ME4a LINE L1 -627 5537 5431 2326 110 0 13 chr21 32182824 32183134 -12724436 - AluSc SINE Alu -3 306 1 2125 227 56 75 chr21 32183134 32183380 -12724190 - L1ME4a LINE L1 -733 5431 5182 2316 93 3 3 chr21 32183380 32183682 -12723888 - AluSx SINE Alu -10 302 1 2125 227 56 75 chr21 32183682 32184387 -12723183 - L1ME4a LINE L1 -982 5182 4507 1289 188 43 108 chr21 32184443 32184858 -12722712 - MLT1B LTR MaLR -2 388 1 2355 238 45 50 chr21 32184869 32185530 -12722040 + L1MEd LINE L1 900 1558 -4972 2162 125 3 10 chr21 32185530 32185835 -12721735 + AluSx SINE Alu 1 303 -9 2355 238 45 50 chr21 32185835 32185945 -12721625 + L1MEd LINE L1 1558 1667 -4863 227 279 67 18 chr21 32185996 32186141 -12721429 + L1MEd LINE L1 2428 2583 -3957 700 197 15 8 chr21 32186141 32186273 -12721297 + FLAM_A SINE Alu 1 133 0 227 279 67 18 chr21 32186273 32186292 -12721278 + L1MEd LINE L1 2583 2600 -3940 384 22 0 0 chr21 32186292 32186337 -12721233 + (CA)n Simple_repeat Simple_repeat 2 46 0 688 296 37 21 chr21 32186391 32186719 -12720851 + L1MEd LINE L1 2682 3014 -3526 2249 105 0 0 chr21 32186775 32187060 -12720510 + AluSx SINE Alu 1 285 -27 3274 137 29 4 chr21 32187684 32188194 -12719376 - MER1A DNA MER1_type 0 529 7 4442 244 57 27 chr21 32188205 32190051 -12717519 + L1ME LINE L1 820 2689 -3851 23 0 0 0 chr21 32190134 32190157 -12717413 + AT_rich Low_complexity Low_complexity 1 23 0 724 171 7 0 chr21 32190197 32190337 -12717233 + L1MA5 LINE L1 6003 6143 -157 814 153 0 0 chr21 32190337 32190455 -12717115 - AluSg/x SINE Alu -17 293 176 1947 114 9 57 chr21 32190480 32190795 -12716775 - AluSc SINE Alu -9 300 1 1169 107 0 0 chr21 32190795 32190963 -12716607 + L1MA5 LINE L1 6133 6300 0 317 322 78 26 chr21 32191059 32191289 -12716281 + MIR SINE MIR 21 262 0 2628 65 0 0 chr21 32191442 32191751 -12715819 + AluY SINE Alu 1 309 -2 183 218 0 0 chr21 32191770 32191825 -12715745 + (AATAG)n Simple_repeat Simple_repeat 1 55 0 224 330 124 5 chr21 32192069 32192287 -12715283 - L2 LINE L2 -559 2755 2512 463 238 98 109 chr21 32192537 32192987 -12714583 + MER65A LTR ERV1 1 445 0 920 258 41 27 chr21 32193007 32193375 -12714195 + L2 LINE L2 2222 2594 -720 729 247 50 108 chr21 32193422 32193859 -12713711 + L2 LINE L2 2850 3261 -52 361 283 20 0 chr21 32193881 32193980 -12713590 + MER45A DNA AcHobo 78 178 0 223 156 0 22 chr21 32193984 32194029 -12713541 + L2 LINE L2 3267 3310 -3 225 65 0 0 chr21 32194104 32194135 -12713435 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 330 229 128 0 chr21 32194247 32194356 -12713214 - MIR SINE MIR -83 179 57 1752 148 60 7 chr21 32195182 32195465 -12712105 - AluJo SINE Alu -14 298 1 186 104 39 52 chr21 32195485 32195562 -12712008 + (TAAA)n Simple_repeat Simple_repeat 3 78 0 259 265 7 46 chr21 32195586 32195737 -12711833 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 285 277 11 53 chr21 32195749 32195937 -12711633 + (TATTG)n Simple_repeat Simple_repeat 1 180 0 244 209 76 41 chr21 32195903 32196075 -12711495 + (TATG)n Simple_repeat Simple_repeat 3 180 0 * 308 246 6 55 chr21 32196015 32196280 -12711290 + (TTATA)n Simple_repeat Simple_repeat 1 251 0 313 335 81 24 chr21 32196970 32197179 -12710391 + MIR SINE MIR 11 231 -31 187 343 58 52 chr21 32197275 32197447 -12710123 + L2 LINE L2 3124 3296 -17 520 298 29 8 chr21 32197642 32197842 -12709728 + MIR SINE MIR 7 210 -52 2084 106 47 10 chr21 32197849 32198150 -12709420 + AluSx SINE Alu 1 312 0 592 258 148 51 chr21 32198258 32198678 -12708892 - MLT1J LTR MaLR -21 429 1 216 293 187 0 chr21 32199274 32199397 -12708173 + L2 LINE L2 3119 3264 -8 2240 125 0 3 chr21 32201011 32201323 -12706247 - AluSx SINE Alu -1 311 1 252 0 0 0 chr21 32201576 32201604 -12705966 + (CA)n Simple_repeat Simple_repeat 2 29 0 318 342 27 9 chr21 32201665 32201776 -12705794 + MIR3 SINE MIR 4 116 -92 1981 191 62 29 chr21 32201787 32202274 -12705296 - MLT1D LTR MaLR -2 503 1 2339 97 3 0 chr21 32202280 32202579 -12704991 - AluSx SINE Alu -12 300 1 961 168 19 0 chr21 32202886 32203041 -12704529 + FRAM SINE Alu 1 157 -19 561 68 0 0 chr21 32204110 32204184 -12703386 + (CA)n Simple_repeat Simple_repeat 1 74 0 525 221 6 12 chr21 32204702 32204865 -12702705 + CT-rich Low_complexity Low_complexity 3 164 0 2364 104 0 0 chr21 32204888 32205196 -12702374 - AluSq SINE Alu -5 308 1 354 371 89 16 chr21 32205217 32205645 -12701925 - L1MEd LINE L1 -4955 1164 706 198 0 0 0 chr21 32206403 32206425 -12701145 + (CTCA)n Simple_repeat Simple_repeat 1 22 0 321 138 64 53 chr21 32207215 32207309 -12700261 - MIR SINE MIR -78 130 36 473 268 258 25 chr21 32207654 32207768 -12699802 - L2 LINE L2 -18 3295 3209 1522 177 13 33 chr21 32207768 32208068 -12699502 + AluJo SINE Alu 1 294 -18 473 268 258 25 chr21 32208068 32208348 -12699222 - L2 LINE L2 -104 3209 2809 2748 193 35 2 chr21 32208428 32208968 -12698602 - L1MB2 LINE L1 -18 6153 5596 638 96 0 21 chr21 32208969 32209063 -12698507 - AluSg/x SINE Alu -12 300 209 1533 110 5 0 chr21 32209213 32209413 -12698157 - AluSq SINE Alu -112 201 1 329 271 106 48 chr21 32209469 32209657 -12697913 - L2 LINE L2 -923 2391 2193 1849 101 74 0 chr21 32209683 32209940 -12697630 - AluSq SINE Alu -37 276 1 299 146 0 21 chr21 32209941 32209989 -12697581 + MER58B DNA MER1_type 40 86 -255 2333 69 41 0 chr21 32209989 32210279 -12697291 - AluY SINE Alu -9 302 1 1340 219 49 3 chr21 32210280 32210568 -12697002 + MER58B DNA MER1_type 40 340 -1 1397 250 53 35 chr21 32210861 32211313 -12696257 - MLT1C LTR MaLR -2 465 6 2878 151 69 59 chr21 32212133 32212314 -12695256 - L1MB5 LINE L1 -33 6141 5963 201 39 0 0 chr21 32212314 32212340 -12695230 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 1840 111 0 57 chr21 32212345 32212643 -12694927 - AluSx SINE Alu -31 281 1 2878 151 69 59 chr21 32212643 32213079 -12694491 - L1MB5 LINE L1 -214 5960 5512 193 54 0 54 chr21 32214725 32214762 -12692808 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 644 73 47 44 chr21 32215142 32215487 -12692083 + (CACAC)n Simple_repeat Simple_repeat 1 346 0 437 80 80 14 chr21 32215508 32215646 -12691924 + (CACAC)n Simple_repeat Simple_repeat 5 151 0 2142 169 31 22 chr21 32215824 32216281 -12691289 - MLT1C LTR MaLR -6 461 1 214 291 163 23 chr21 32216546 32216632 -12690938 - MIR SINE MIR -91 117 20 1947 148 0 0 chr21 32216961 32217252 -12690318 - AluJb SINE Alu -21 291 1 200 327 51 15 chr21 32217777 32217911 -12689659 - MIR3 SINE MIR -104 104 3 2089 103 63 3 chr21 32218264 32218583 -12688987 - MSTA LTR MaLR -2 426 89 536 239 28 142 chr21 32218603 32218892 -12688678 - LTR67 LTR ERVL -298 259 4 374 317 56 12 chr21 32218936 32219097 -12688473 + MIR SINE MIR 8 175 -87 2056 92 48 3 chr21 32219318 32219611 -12687959 - AluSq SINE Alu -7 306 1 234 0 0 0 chr21 32220371 32220397 -12687173 + (T)n Simple_repeat Simple_repeat 1 26 0 2044 125 0 38 chr21 32220520 32220840 -12686730 + AluSx SINE Alu 1 308 -4 604 195 0 35 chr21 32220979 32221092 -12686478 - L2 LINE L2 0 3313 3205 387 349 83 42 chr21 32221201 32221513 -12686057 - L2 LINE L2 0 3272 2948 1984 108 97 62 chr21 32222547 32222899 -12684671 - THE1B LTR MaLR 0 364 1 1740 154 10 13 chr21 32222921 32223219 -12684351 - AluJb SINE Alu -15 297 1 700 293 201 15 chr21 32224396 32224724 -12682846 - MLT1J LTR MaLR -52 459 71 331 305 114 15 chr21 32224753 32225015 -12682555 - L1MDb LINE L1 -3431 2975 2688 606 248 109 30 chr21 32225019 32225358 -12682212 - L1MDb LINE L1 -3632 2774 2409 2015 104 0 20 chr21 32225360 32225688 -12681882 - AluSx SINE Alu 0 312 1 308 322 26 0 chr21 32225782 32225897 -12681673 - L1MDb LINE L1 -4684 1724 1607 1583 163 14 14 chr21 32225913 32226201 -12681369 - AluJb SINE Alu -24 288 1 22 0 0 0 chr21 32226391 32226413 -12681157 + AT_rich Low_complexity Low_complexity 1 22 0 701 319 53 42 chr21 32226428 32226859 -12680711 - L1MDb LINE L1 -1088 1679 1148 1679 155 25 147 chr21 32227475 32227946 -12679624 - MLT2D LTR ERVL 0 414 1 375 186 43 0 chr21 32227954 32228024 -12679546 + MER5A DNA MER1_type 10 82 -107 294 198 31 18 chr21 32228188 32228260 -12679310 + MER5B DNA MER1_type 61 139 -50 258 228 25 63 chr21 32228319 32228398 -12679172 + MER5A DNA MER1_type 7 82 -107 213 254 0 60 chr21 32228456 32228523 -12679047 + L3 LINE CR1 1511 1573 -4 665 271 104 85 chr21 32229074 32229355 -12678215 + L2 LINE L2 2637 2911 -402 2111 116 3 0 chr21 32229355 32229657 -12677913 - AluSx SINE Alu -8 304 2 665 271 104 85 chr21 32229657 32230033 -12677537 + L2 LINE L2 2911 3309 -4 484 263 23 15 chr21 32231143 32231276 -12676294 - L2 LINE L2 -5 3308 3175 1520 180 10 20 chr21 32231413 32231713 -12675857 - AluJo SINE Alu -15 297 1 904 112 15 0 chr21 32231720 32231854 -12675716 - AluJo SINE Alu -176 136 1 766 229 138 18 chr21 32232099 32232279 -12675291 + MER33 DNA MER1_type 15 241 -2344 1572 156 0 39 chr21 32232279 32232562 -12675008 - AluJb SINE Alu -18 294 23 766 229 138 18 chr21 32232562 32232656 -12674914 + MER33 DNA MER1_type 241 322 -2 182 279 108 63 chr21 32233186 32233297 -12674273 - MIR SINE MIR -111 151 36 329 109 0 0 chr21 32233490 32233536 -12674034 - MLT2B2 LTR ERVL 0 520 475 768 95 56 14 chr21 32233562 32233846 -12673724 + (TCTA)n Simple_repeat Simple_repeat 1 296 0 2636 147 23 21 chr21 32233866 32234302 -12673268 - MLT2B2 LTR ERVL -75 440 4 1636 68 40 9 chr21 32235508 32235730 -12671840 + AluSx SINE Alu 1 229 -83 812 151 54 36 chr21 32235731 32235897 -12671673 + AluSg/x SINE Alu 142 310 0 389 322 92 6 chr21 32236060 32236234 -12671336 + MER5A DNA MER1_type 1 189 0 2158 115 0 0 chr21 32236265 32236569 -12671001 - AluSx SINE Alu -8 304 1 264 30 0 0 chr21 32237876 32237909 -12669661 + (TG)n Simple_repeat Simple_repeat 2 34 0 2173 101 7 3 chr21 32237948 32238256 -12669314 + AluSx SINE Alu 1 309 -3 1596 172 7 4 chr21 32238381 32238654 -12668916 - AluJo SINE Alu -30 282 9 1070 231 117 14 chr21 32238661 32238676 -12668894 - LTR33A LTR ERVL -51 472 460 5171 102 0 10 chr21 32238676 32239374 -12668196 - LTR8 LTR ERV1 0 691 1 1070 231 117 14 chr21 32239374 32239709 -12667861 - LTR33A LTR ERVL -63 460 86 964 189 0 5 chr21 32239934 32240125 -12667445 + AluJo SINE Alu 122 311 -1 36 0 0 0 chr21 32240615 32240651 -12666919 + AT_rich Low_complexity Low_complexity 1 36 0 4431 169 54 81 chr21 32240651 32241318 -12666252 - L1MC3 LINE L1 -6 7779 7152 2114 113 0 0 chr21 32241318 32241609 -12665961 - AluSx SINE Alu -21 291 1 4431 169 54 81 chr21 32241609 32242051 -12665519 - L1MC3 LINE L1 -633 7152 6700 1676 176 0 7 chr21 32242067 32242356 -12665214 - AluJb SINE Alu -19 293 7 524 291 47 38 chr21 32242645 32242858 -12664712 + MIR SINE MIR 41 255 -7 1041 130 0 111 chr21 32243536 32243743 -12663827 + MER5A DNA MER1_type 1 184 -5 2265 108 41 36 chr21 32243743 32244105 -12663465 - THE1B LTR MaLR 0 364 1 1818 121 0 0 chr21 32244251 32244507 -12663063 + AluSx SINE Alu 42 297 -15 4900 151 36 7 chr21 32244509 32245024 -12662546 + L1MC2 LINE L1 5473 6022 -322 2769 132 12 25 chr21 32245024 32245259 -12662311 - MSTA LTR MaLR 0 428 200 2215 85 0 0 chr21 32245259 32245552 -12662018 - AluY SINE Alu -18 293 1 2769 132 12 25 chr21 32245552 32245747 -12661823 - MSTA LTR MaLR -228 200 4 4900 151 36 7 chr21 32245747 32246054 -12661516 + L1MC2 LINE L1 6022 6319 -25 2233 96 3 0 chr21 32246445 32246747 -12660823 - AluSx SINE Alu -9 303 1 2093 111 7 0 chr21 32246747 32247044 -12660526 - AluSq SINE Alu -14 299 1 333 250 54 29 chr21 32247336 32247456 -12660114 + MLT1J LTR MaLR 59 216 -289 718 248 54 61 chr21 32247519 32247797 -12659773 + MLT1J LTR MaLR 232 507 -4 568 259 132 18 chr21 32247811 32248039 -12659531 + MIR SINE MIR 2 255 -7 1963 147 0 3 chr21 32248120 32248426 -12659144 + AluSx SINE Alu 1 305 -7 1299 261 215 23 chr21 32248797 32249410 -12658160 + L2 LINE L2 1294 2024 -1290 467 274 53 0 chr21 32249453 32249566 -12658004 + L2 LINE L2 3195 3313 0 1131 214 18 0 chr21 32249572 32249792 -12657778 + MER58A DNA MER1_type 1 224 0 474 311 34 0 chr21 32250052 32250200 -12657370 - MIR SINE MIR -52 210 58 395 290 40 16 chr21 32250317 32250441 -12657129 - MIR SINE MIR -134 128 2 1342 184 46 116 chr21 32251134 32251547 -12656023 - MLT1B LTR MaLR 0 390 7 668 276 40 25 chr21 32251820 32252019 -12655551 - MIR SINE MIR -47 215 14 277 309 63 103 chr21 32254189 32254412 -12653158 - L2 LINE L2 -52 3220 3007 * 777 269 94 22 chr21 32254405 32254680 -12652890 + L2 LINE L2 3019 3313 0 310 351 253 6 chr21 32254717 32255512 -12652058 - L2 LINE L2 -339 2975 2377 1707 179 103 30 chr21 32255512 32255947 -12651623 + MLT1C LTR MaLR 1 467 0 310 351 253 6 chr21 32255947 32256149 -12651421 - L2 LINE L2 -937 2377 1732 586 0 27 0 chr21 32256184 32256258 -12651312 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2017 109 3 17 chr21 32256263 32256565 -12651005 - AluSx SINE Alu -14 298 1 1128 49 39 4 chr21 32256579 32256846 -12650724 + (TCTA)n Simple_repeat Simple_repeat 1 276 0 3692 142 24 61 chr21 32256853 32257125 -12650445 - L1MA9 LINE L1 -110 6202 5921 2007 86 25 0 chr21 32257125 32257405 -12650165 - AluSx SINE Alu -11 301 15 3692 142 24 61 chr21 32257405 32257849 -12649721 - L1MA9 LINE L1 -391 5921 5513 3526 116 24 0 chr21 32257856 32258347 -12649223 + MER1A DNA MER1_type 27 529 0 450 122 122 0 chr21 32258347 32258437 -12649133 - L1MA9 LINE L1 -854 5480 5380 2267 97 3 0 chr21 32258567 32258876 -12648694 - AluSx SINE Alu -2 310 1 3317 147 25 58 chr21 32258876 32259482 -12648088 - MER7C DNA MER2_type -16 586 1 1182 65 0 0 chr21 32259498 32259651 -12647919 + AluSg/x SINE Alu 157 309 -1 398 232 142 21 chr21 32260069 32260210 -12647360 - MLT1J2 LTR MaLR -8 541 268 508 225 61 13 chr21 32260254 32260404 -12647166 - MLT1J2 LTR MaLR -304 146 1 * 606 274 68 44 chr21 32260404 32260655 -12646915 + MLT1L LTR MaLR 347 603 -12 251 319 44 74 chr21 32261027 32261149 -12646421 + L2 LINE L2 3137 3257 -15 2143 115 0 0 chr21 32261149 32261433 -12646137 + AluSx SINE Alu 2 285 -27 181 0 0 0 chr21 32261433 32261453 -12646117 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 251 319 44 74 chr21 32261453 32261464 -12646106 + L2 LINE L2 3257 3267 -5 278 296 71 0 chr21 32261517 32261615 -12645955 + MIR SINE MIR 49 153 -109 376 257 40 23 chr21 32262199 32262374 -12645196 + MIR3 SINE MIR 21 198 -10 306 333 12 41 chr21 32262435 32262681 -12644889 + L1ME4a LINE L1 5657 5895 -226 216 275 0 29 chr21 32263035 32263104 -12644466 + CT-rich Low_complexity Low_complexity 1 67 0 1695 179 16 36 chr21 32263149 32263513 -12644057 - L1ME2 LINE L1 -9 6155 5799 1261 190 54 40 chr21 32263517 32263899 -12643671 + MLT1D LTR MaLR 10 449 -56 1944 120 45 14 chr21 32263899 32264191 -12643379 - AluSq SINE Alu -12 301 1 1261 190 54 40 chr21 32264191 32264249 -12643321 + MLT1D LTR MaLR 449 505 0 1136 177 58 8 chr21 32264257 32264500 -12643070 - L1ME2 LINE L1 -384 5780 5526 261 167 0 0 chr21 32265069 32265123 -12642447 + T-rich Low_complexity Low_complexity 1 54 0 706 283 104 26 chr21 32268964 32269233 -12638337 + LTR16A LTR ERVL 146 435 -15 264 226 16 0 chr21 32269443 32269505 -12638065 - MER33 DNA MER1_type 0 324 262 243 125 0 0 chr21 32269520 32269552 -12638018 - MLT1E3 LTR MaLR -592 32 1 828 135 16 8 chr21 32269604 32269730 -12637840 - FLAM_C SINE Alu -16 127 1 786 246 58 22 chr21 32269732 32269956 -12637614 - MER33 DNA MER1_type -91 233 2 5154 188 55 51 chr21 32270002 32271215 -12636355 + L1MB7 LINE L1 9 1226 -5316 4591 177 56 13 chr21 32271257 32271540 -12636030 + L1MB7 LINE L1 4791 5060 -1622 183 42 0 0 chr21 32271540 32271564 -12636006 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4591 177 56 13 chr21 32271564 32272188 -12635382 + L1MB7 LINE L1 5060 5655 -1027 3504 136 76 7 chr21 32272188 32272790 -12634780 + LTR48B LTR ERV1 1 644 0 4591 177 56 13 chr21 32272790 32273433 -12634137 + L1MB7 LINE L1 5655 6421 -261 507 148 102 0 chr21 32273433 32273521 -12634049 - Tigger7 DNA MER2_type 0 2487 2391 * 1510 180 47 4 chr21 32273520 32273776 -12633794 - Tigger7 DNA MER2_type -2220 267 1 1105 166 64 25 chr21 32273776 32274011 -12633559 + L1MB7 LINE L1 6420 6663 -19 23 33 0 0 chr21 32274024 32274054 -12633516 + AT_rich Low_complexity Low_complexity 1 30 0 1728 262 102 2 chr21 32274458 32275034 -12632536 + L2 LINE L2 1993 2626 -688 628 114 0 0 chr21 32275035 32275123 -12632447 - AluSp/q SINE Alu -12 301 214 232 318 26 14 chr21 32275123 32275340 -12632230 + L2 LINE L2 2608 2897 -417 2203 116 7 0 chr21 32275341 32275635 -12631935 - AluSx SINE Alu -16 296 1 496 230 7 34 chr21 32275650 32275798 -12631772 + MIR SINE MIR 119 262 0 181 237 0 0 chr21 32275938 32275976 -12631594 + MIR SINE MIR 220 257 -5 389 130 52 13 chr21 32275976 32276053 -12631517 - MADE1 DNA Mariner 0 80 1 260 241 126 0 chr21 32276277 32276364 -12631206 - HAL1 LINE L1 -856 1651 1554 294 260 34 91 chr21 32276390 32276598 -12630972 - HAL1 LINE L1 -1045 1462 1267 2383 101 0 0 chr21 32277256 32277553 -12630017 - AluSx SINE Alu -15 297 1 2226 89 7 23 chr21 32277564 32277866 -12629704 - AluY SINE Alu -14 297 1 951 288 104 16 chr21 32278485 32279364 -12628206 + L1ME3A LINE L1 3287 4254 -1892 933 291 120 3 chr21 32279366 32279479 -12628091 + L1ME3A LINE L1 4652 4750 -1396 192 77 0 0 chr21 32279479 32279505 -12628065 + (TA)n Simple_repeat Simple_repeat 1 26 0 933 291 120 3 chr21 32279505 32279881 -12627689 + L1ME3A LINE L1 4750 5205 -941 405 0 0 0 chr21 32279896 32279941 -12627629 + (CA)n Simple_repeat Simple_repeat 2 46 0 2050 259 26 6 chr21 32279956 32280444 -12627126 + L1ME3A LINE L1 5293 5817 -353 1947 93 31 4 chr21 32280444 32280703 -12626867 + AluSp SINE Alu 13 278 -35 2050 259 26 6 chr21 32280703 32280856 -12626714 + L1ME3A LINE L1 5817 5966 -204 447 223 102 41 chr21 32280909 32281089 -12626481 + L1ME3A LINE L1 5962 6156 -14 483 107 0 0 chr21 32281089 32281164 -12626406 + (CA)n Simple_repeat Simple_repeat 2 76 0 447 223 102 41 chr21 32281164 32281180 -12626390 + L1ME3A LINE L1 6156 6170 0 276 278 14 0 chr21 32281513 32281585 -12625985 + GA-rich Low_complexity Low_complexity 3 75 0 1768 178 0 20 chr21 32281952 32282245 -12625325 + AluJb SINE Alu 1 287 -25 2024 123 3 36 chr21 32282786 32283094 -12624476 + AluSx SINE Alu 1 298 -14 2329 91 0 7 chr21 32283141 32283437 -12624133 + AluSc SINE Alu 1 294 -15 497 71 0 119 chr21 32283593 32283677 -12623893 + AluS SINE Alu 2 75 -238 1968 120 0 4 chr21 32283677 32283952 -12623618 + AluSx SINE Alu 33 306 -6 610 240 71 43 chr21 32283952 32284206 -12623364 + L2 LINE L2 3039 3299 -14 222 37 0 0 chr21 32284450 32284477 -12623093 + (TG)n Simple_repeat Simple_repeat 2 28 0 282 282 13 0 chr21 32284874 32284952 -12622618 + L2 LINE L2 3179 3257 -15 183 80 0 0 chr21 32284954 32284979 -12622591 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 196 336 41 14 chr21 32285365 32285511 -12622059 - L2 LINE L2 -995 2319 2170 2302 113 3 3 chr21 32285928 32286239 -12621331 - AluSx SINE Alu -1 311 1 2197 110 3 7 chr21 32286578 32286877 -12620693 - AluSx SINE Alu -14 298 1 430 312 131 15 chr21 32286975 32287373 -12620197 + L1ME4a LINE L1 5625 6068 -53 2224 108 24 0 chr21 32287677 32287973 -12619597 - AluSx SINE Alu -5 307 5 1242 111 40 127 chr21 32288859 32289111 -12618459 + MER30 DNA MER1_type 1 230 0 333 274 77 0 chr21 32289131 32289248 -12618322 - L2 LINE L2 -2 3311 3186 439 284 171 10 chr21 32289508 32289746 -12617824 - MIR SINE MIR 0 262 2 499 181 0 0 chr21 32290787 32290870 -12616700 + HsTC2 DNA Tc2 2 84 -1814 1882 151 9 25 chr21 32290871 32291188 -12616382 + AluSq SINE Alu 1 312 -1 1793 156 82 85 chr21 32291334 32291738 -12615832 + MSTD LTR MaLR 3 396 0 828 286 80 43 chr21 32291946 32292383 -12615187 - MLT1J LTR MaLR -39 472 20 1146 141 75 144 chr21 32292557 32292904 -12614666 - MLT1A1 LTR MaLR -42 323 1 688 267 83 24 chr21 32293944 32294294 -12613276 + MLT1J LTR MaLR 99 494 -17 444 266 42 14 chr21 32294460 32294603 -12612967 + L3 LINE CR1 1189 1335 -242 415 179 127 30 chr21 32294640 32294774 -12612796 - LTR67 LTR ERVL -2 555 409 3468 217 60 1 chr21 32295898 32296677 -12610893 - L1ME1 LINE L1 -9 6157 5333 1412 109 0 0 chr21 32298674 32298857 -12608713 + AluSq SINE Alu 1 183 -130 246 62 0 0 chr21 32298864 32298896 -12608674 + (A)n Simple_repeat Simple_repeat 1 32 0 426 285 67 12 chr21 32299848 32300013 -12607557 + MIR SINE MIR 81 254 -8 22 35 0 0 chr21 32300441 32300470 -12607100 + AT_rich Low_complexity Low_complexity 1 29 0 2445 88 3 0 chr21 32300497 32300804 -12606766 - AluSp SINE Alu -5 308 1 2237 106 7 0 chr21 32301214 32301506 -12606064 - AluSx SINE Alu -18 294 1 288 229 56 0 chr21 32301905 32302000 -12605570 + MIR SINE MIR 66 165 -62 1940 136 204 2 chr21 32302006 32302403 -12605167 - MER31A LTR ERV1 -8 477 1 229 277 64 11 chr21 32302403 32302497 -12605073 + MIR SINE MIR 162 260 -2 372 148 54 54 chr21 32303443 32303592 -12603978 + (CGGGG)n Simple_repeat Simple_repeat 4 152 0 27 87 0 0 chr21 32303839 32303908 -12603662 + GC_rich Low_complexity Low_complexity 1 69 0 234 256 23 28 chr21 32303925 32304101 -12603469 + (CGGG)n Simple_repeat Simple_repeat 3 177 0 232 183 21 43 chr21 32304214 32304307 -12603263 + (CCG)n Simple_repeat Simple_repeat 2 92 0 646 295 55 18 chr21 32309156 32309373 -12598197 + MER58 DNA MER1_type 1 225 -116 292 178 0 0 chr21 32309359 32309404 -12598166 + MER58 DNA MER1_type 2376 2420 0 * 1928 104 10 61 chr21 32309496 32309793 -12597777 - AluSg SINE Alu -8 302 21 201 174 43 22 chr21 32311693 32311739 -12595831 + MIR SINE MIR 104 150 -112 192 232 58 43 chr21 32311798 32311867 -12595703 + MIR SINE MIR 64 133 -75 368 283 61 56 chr21 32312006 32312204 -12595366 - Charlie8 DNA MER1_type -2193 224 26 211 241 114 25 chr21 32314655 32314734 -12592836 - MIR SINE MIR -59 203 118 734 258 183 34 chr21 32315035 32315594 -12591976 - L1MC4 LINE L1 -213 7829 7188 287 210 152 62 chr21 32315595 32315664 -12591906 - L1MC5 LINE L1 -180 7781 7720 2256 70 7 13 chr21 32315664 32315965 -12591605 - AluY SINE Alu -12 299 1 287 210 152 62 chr21 32315965 32316171 -12591399 - L1MC5 LINE L1 -241 7720 7481 198 0 0 0 chr21 32316273 32316295 -12591275 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 300 27 0 0 chr21 32316575 32316612 -12590958 + (TG)n Simple_repeat Simple_repeat 2 38 0 554 216 54 20 chr21 32316691 32316839 -12590731 + MIR SINE MIR 108 260 -2 637 275 213 22 chr21 32317445 32317765 -12589805 - L2 LINE L2 0 3313 2933 999 247 92 13 chr21 32317783 32318099 -12589471 - L2 LINE L2 -612 2702 2362 685 250 66 9 chr21 32318693 32318905 -12588665 + MIR SINE MIR 3 226 -36 22 0 0 0 chr21 32318933 32318955 -12588615 + AT_rich Low_complexity Low_complexity 1 22 0 1959 112 42 3 chr21 32319095 32319381 -12588189 - AluSx SINE Alu -15 297 1 1141 154 81 14 chr21 32319982 32320203 -12587367 - MER46A DNA MER2_type 0 236 1 266 270 148 65 chr21 32320716 32320937 -12586633 - MIR SINE MIR -6 256 16 22 0 0 0 chr21 32321416 32321438 -12586132 + AT_rich Low_complexity Low_complexity 1 22 0 242 81 27 0 chr21 32321483 32321520 -12586050 - MER94 DNA DNA -94 40 3 2693 205 182 37 chr21 32336573 32336991 -12570579 - L1MC4 LINE L1 -5 8037 7681 2023 132 0 33 chr21 32336991 32337295 -12570275 - AluSx SINE Alu -18 294 1 2693 205 182 37 chr21 32337295 32338049 -12569521 - L1MC4 LINE L1 -361 7681 6695 2058 209 102 7 chr21 32338049 32338586 -12568984 + MER7C DNA MER2_type 1 588 -14 387 237 43 0 chr21 32338597 32338690 -12568880 - L1MC4a LINE L1 -1229 6579 6483 445 221 30 23 chr21 32338744 32338875 -12568695 - HAL1 LINE L1 -856 1651 1520 527 234 97 22 chr21 32338983 32339252 -12568318 - HAL1 LINE L1 -1244 1263 975 409 251 265 25 chr21 32339479 32339762 -12567808 - HAL1 LINE L1 -1868 639 289 451 155 0 0 chr21 32339891 32339975 -12567595 + L1MA9 LINE L1 6229 6312 0 1833 134 0 68 chr21 32340244 32340565 -12567005 + AluJb SINE Alu 1 299 -13 2084 226 37 51 chr21 32340679 32341322 -12566248 + MER82 DNA MER2_type 14 647 -6 245 128 64 0 chr21 32341342 32341389 -12566181 - L1ME3A LINE L1 -88 6082 6033 405 286 154 53 chr21 32341393 32341711 -12565859 - L3 LINE CR1 -142 1435 1086 661 179 112 54 chr21 32342501 32342725 -12564845 - L1MB8 LINE L1 -16 6162 5926 770 166 88 0 chr21 32342730 32342911 -12564659 - L1MA6 LINE L1 -238 6062 5866 870 139 8 0 chr21 32342943 32343072 -12564498 + AluSq/x SINE Alu 5 134 -179 2714 128 68 0 chr21 32343090 32343573 -12563997 + L1MA6 LINE L1 5428 5943 -357 476 248 90 41 chr21 32344520 32344665 -12562905 + MER5B DNA MER1_type 3 154 -24 22 35 0 0 chr21 32346027 32346056 -12561514 + AT_rich Low_complexity Low_complexity 1 29 0 1395 178 30 4 chr21 32346091 32346242 -12561328 - AluJb SINE Alu -32 280 119 402 21 0 0 chr21 32346242 32346289 -12561281 + (TG)n Simple_repeat Simple_repeat 2 48 0 1395 178 30 4 chr21 32346289 32346373 -12561197 - AluJb SINE Alu -193 119 39 535 68 0 11 chr21 32346393 32346481 -12561089 - L1PB1 LINE L1 0 6151 6065 396 259 129 26 chr21 32346526 32346653 -12560917 - L1MB8 LINE L1 -346 5775 5663 3464 75 16 0 chr21 32346653 32347104 -12560466 - LTR22A LTR ERVK 0 458 1 396 259 129 26 chr21 32347104 32347208 -12560362 - L1MB8 LINE L1 -458 5663 5520 24 0 0 0 chr21 32348108 32348132 -12559438 + AT_rich Low_complexity Low_complexity 1 24 0 751 116 249 17 chr21 32348226 32348399 -12559171 - Tigger2 DNA MER2_type 0 2718 2506 561 179 0 34 chr21 32348400 32348517 -12559053 - Tigger2 DNA MER2_type -2601 117 5 216 97 0 0 chr21 32348605 32348636 -12558934 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1534 156 17 0 chr21 32348647 32348878 -12558692 - AluSx SINE Alu -77 235 1 468 293 14 0 chr21 32350100 32350240 -12557330 + Charlie1 DNA MER1_type 1447 1588 -1173 995 282 82 15 chr21 32350275 32350605 -12556965 - L3 LINE CR1 -23 1554 1203 24 53 0 0 chr21 32350725 32350763 -12556807 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr21 32350790 32350811 -12556759 + AT_rich Low_complexity Low_complexity 1 21 0 399 290 24 24 chr21 32351066 32351190 -12556380 - L2 LINE L2 -13 3300 3177 292 281 0 141 chr21 32351404 32351539 -12556031 - MIR SINE MIR -63 145 30 810 216 43 0 chr21 32352192 32352377 -12555193 - MER58A DNA MER1_type -28 196 4 292 354 102 30 chr21 32353926 32354398 -12553172 + L2 LINE L2 1989 2494 -820 322 192 33 125 chr21 32354460 32354580 -12552990 + L1ME4a LINE L1 5947 6055 -66 226 265 41 0 chr21 32354854 32354903 -12552667 + L2 LINE L2 3137 3187 -85 291 230 9 71 chr21 32355170 32355283 -12552287 + LTR67 LTR ERVL 427 532 -25 246 280 53 13 chr21 32356903 32356978 -12550592 - MER5A DNA MER1_type -111 78 1 274 263 53 0 chr21 32357459 32357554 -12550016 - MER103 DNA DNA -7 159 60 440 266 76 27 chr21 32362685 32362869 -12544701 + MIR3 SINE MIR 13 205 -3 383 231 19 39 chr21 32362907 32363011 -12544559 + MIR SINE MIR 33 134 -128 597 212 40 33 chr21 32364545 32364570 -12543000 - L1MA10 LINE L1 -3 6331 6307 533 299 35 0 chr21 32364570 32364767 -12542803 - L1ME1 LINE L1 -16 6150 5947 1533 126 106 17 chr21 32364772 32365074 -12542496 + MER47A DNA MER2_type 37 365 -1 927 216 190 4 chr21 32365087 32365387 -12542183 - L1MD2 LINE L1 -471 5888 5575 234 0 0 0 chr21 32365411 32365437 -12542133 + (T)n Simple_repeat Simple_repeat 1 26 0 2396 104 0 0 chr21 32366201 32366508 -12541062 - AluSx SINE Alu -1 311 5 2169 185 107 20 chr21 32366511 32368488 -12539082 - L1MD2 LINE L1 -642 5524 3573 7746 22 10 0 chr21 32368488 32369410 -12538160 + L1PA3 LINE L1 5223 6155 0 3273 216 86 70 chr21 32369411 32369652 -12537918 - L1MD2 LINE L1 -2570 3576 3340 1898 159 0 0 chr21 32369652 32369942 -12537628 - AluJb SINE Alu -22 290 1 3273 216 86 70 chr21 32369942 32370984 -12536586 - L1MD2 LINE L1 -2806 3340 2273 608 317 89 40 chr21 32371212 32371641 -12535929 - L2 LINE L2 -14 3299 2850 189 74 0 0 chr21 32372343 32372370 -12535200 + (TG)n Simple_repeat Simple_repeat 2 28 0 3353 92 2 101 chr21 32375685 32376252 -12531318 - MER9 LTR ERVK 0 511 1 2385 60 3 0 chr21 32376891 32377205 -12530365 - AluY SINE Alu 0 317 3 209 311 9 28 chr21 32378282 32378388 -12529182 + MIR3 SINE MIR 90 193 -15 2903 205 62 10 chr21 32379342 32379951 -12527619 - MER82 DNA MER2_type -6 647 7 2590 146 21 12 chr21 32380989 32381413 -12526157 - MSTA LTR MaLR 0 428 1 450 283 117 43 chr21 32381502 32382053 -12525517 - L1MD2 LINE L1 -272 5898 5327 2451 85 0 3 chr21 32382178 32382483 -12525087 + AluSq SINE Alu 1 304 -9 2105 283 179 24 chr21 32382538 32383971 -12523599 + L2 LINE L2 36 1690 -1624 2048 112 30 10 chr21 32383984 32384279 -12523291 + AluSx SINE Alu 1 301 -11 1577 157 53 0 chr21 32384645 32384926 -12522644 + L1MA8 LINE L1 5992 6287 -4 2226 111 0 3 chr21 32385297 32385595 -12521975 + AluSq SINE Alu 1 297 -16 234 259 59 0 chr21 32385603 32385688 -12521882 + L1ME4a LINE L1 5965 6054 -67 409 251 128 5 chr21 32386021 32386208 -12521362 + L3b LINE CR1 1200 1409 -174 2311 73 0 54 chr21 32386548 32386865 -12520705 + AluY SINE Alu 1 300 -11 1565 202 80 51 chr21 32386982 32387237 -12520333 + LTR37B LTR ERV1 6 252 -216 270 0 0 0 chr21 32387237 32387267 -12520303 + (TG)n Simple_repeat Simple_repeat 1 30 0 1422 163 0 107 chr21 32387275 32387594 -12519976 - AluJb SINE Alu -17 285 1 1565 202 80 51 chr21 32387594 32387779 -12519791 + LTR37B LTR ERV1 258 468 0 2327 116 0 0 chr21 32388030 32388333 -12519237 - AluSx SINE Alu -9 303 1 1993 139 13 7 chr21 32388813 32389123 -12518447 - AluJb SINE Alu 0 312 1 2493 84 0 0 chr21 32390519 32390830 -12516740 - AluSx SINE Alu -1 311 1 34 0 0 0 chr21 32391060 32391094 -12516476 + AT_rich Low_complexity Low_complexity 1 34 0 2220 98 0 3 chr21 32391105 32391392 -12516178 + AluSc SINE Alu 1 286 -23 25780 89 40 20 chr21 32391395 32394447 -12513123 - MER61A-int LTR ERV1 -13 5204 2065 4585 72 8 18 chr21 32394447 32394958 -12512612 - LTR10C LTR ERV1 0 591 85 2387 86 0 7 chr21 32394958 32395259 -12512311 - AluY SINE Alu -12 299 1 4585 72 8 18 chr21 32395259 32395344 -12512226 - LTR10C LTR ERV1 -506 85 1 25780 89 40 20 chr21 32395344 32395969 -12511601 - MER61A-int LTR ERV1 -3152 2065 1454 303 93 0 0 chr21 32395994 32396037 -12511533 - MER61A-int LTR ERV1 -3855 1362 1320 2850 174 98 35 chr21 32396067 32396732 -12510838 - MER61A-int LTR ERV1 -4510 707 1 1712 138 101 22 chr21 32396732 32397050 -12510520 - MER61A LTR ERV1 0 343 1 238 311 44 0 chr21 32397241 32397344 -12510226 - MIR SINE MIR -57 205 98 1972 147 23 10 chr21 32398108 32398415 -12509155 - AluJb SINE Alu -1 311 1 219 270 157 69 chr21 32399122 32399227 -12508343 + L2 LINE L2 3084 3178 -94 1049 190 59 136 chr21 32399227 32399397 -12508173 - MLT1C LTR MaLR 0 467 285 252 0 0 0 chr21 32399397 32399425 -12508145 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1049 190 59 136 chr21 32399425 32399584 -12507986 - MLT1C LTR MaLR -182 285 188 2025 136 31 7 chr21 32399584 32399878 -12507692 - AluSx SINE Alu -11 301 1 1049 190 59 136 chr21 32399878 32400053 -12507517 - MLT1C LTR MaLR -279 188 1 219 270 157 69 chr21 32400053 32400106 -12507464 + L2 LINE L2 3178 3256 -16 1680 208 0 3 chr21 32400193 32400501 -12507069 - AluJb SINE Alu -5 307 1 2239 121 0 3 chr21 32401367 32401673 -12505897 - AluSx SINE Alu -5 307 3 453 194 87 10 chr21 32401902 32402005 -12505565 - Charlie4 DNA MER1_type -1 1960 1850 4191 218 111 43 chr21 32402786 32403514 -12504056 + L1MD2 LINE L1 384 1061 -5019 2040 124 0 7 chr21 32403514 32403841 -12503729 + AluSx SINE Alu 1 325 0 4191 218 111 43 chr21 32403841 32406258 -12501312 + L1MD2 LINE L1 1061 3709 -2371 827 222 5 53 chr21 32406254 32406461 -12501109 + L1MD2 LINE L1 5309 5505 -671 * 1178 165 21 5 chr21 32406461 32406655 -12500915 - AluJo SINE Alu -115 197 1 1620 210 73 16 chr21 32406659 32407040 -12500530 + L1MD2 LINE L1 5514 5916 -377 234 279 29 0 chr21 32407040 32407108 -12500462 - Charlie4 DNA MER1_type -1863 98 29 275 279 29 58 chr21 32407176 32407280 -12500290 + L2 LINE L2 3172 3272 0 1273 232 37 24 chr21 32408017 32408651 -12498919 - HsTC2c DNA Tc2 -3 726 4 230 271 139 30 chr21 32408707 32408873 -12498697 - L2 LINE L2 -17 3296 3113 361 250 27 18 chr21 32409001 32409113 -12498457 + MER81 DNA DNA 2 114 0 1042 139 18 0 chr21 32410005 32410171 -12497399 - L1PA10 LINE L1 -1 6167 5999 23 0 0 0 chr21 32411461 32411484 -12496086 + AT_rich Low_complexity Low_complexity 1 23 0 350 196 78 20 chr21 32411485 32411587 -12495983 + L1MC5 LINE L1 7817 7924 -37 22 35 0 0 chr21 32412389 32412418 -12495152 + AT_rich Low_complexity Low_complexity 1 29 0 288 254 32 32 chr21 32412823 32412949 -12494621 + LTR16C LTR ERVL 366 491 0 335 245 294 0 chr21 32413579 32413681 -12493889 + MER5A DNA MER1_type 58 189 0 2284 159 57 9 chr21 32415901 32416342 -12491228 + MLT1C LTR MaLR 2 463 -4 193 208 142 92 chr21 32416703 32416758 -12490812 - L2 LINE L2 -268 3045 2994 1876 156 0 13 chr21 32416758 32417072 -12490498 - AluJb SINE Alu -2 310 1 193 208 142 92 chr21 32417072 32417136 -12490434 - L2 LINE L2 -319 2994 2920 493 268 19 64 chr21 32418934 32419091 -12488479 - MIR SINE MIR -93 169 20 1965 204 47 75 chr21 32419121 32419643 -12487927 + MLT2B1 LTR ERVL 1 509 -11 2305 101 13 66 chr21 32419643 32420039 -12487531 + THE1C LTR MaLR 1 375 0 1965 204 47 75 chr21 32420039 32420051 -12487519 + MLT2B1 LTR ERVL 509 520 0 185 284 0 81 chr21 32420058 32420132 -12487438 - MIR SINE MIR -70 192 125 207 100 0 0 chr21 32420208 32420238 -12487332 + (CA)n Simple_repeat Simple_repeat 1 30 0 2003 118 3 0 chr21 32422364 32422652 -12484918 + AluSx SINE Alu 1 289 -23 305 235 101 25 chr21 32422695 32422814 -12484756 + MER5B DNA MER1_type 51 178 0 396 0 0 0 chr21 32423292 32423336 -12484234 + (TTA)n Simple_repeat Simple_repeat 2 45 0 309 215 62 85 chr21 32423380 32423510 -12484060 + L1M4 LINE L1 2234 2360 -3786 2185 116 59 34 chr21 32423643 32423998 -12483572 + THE1B LTR MaLR 1 364 0 498 242 172 25 chr21 32424739 32424896 -12482674 + MER5A DNA MER1_type 9 188 -1 1197 187 67 11 chr21 32425160 32425427 -12482143 - L1MA8 LINE L1 -3 6288 6007 278 259 241 0 chr21 32425544 32425660 -12481910 + MLT1J LTR MaLR 37 180 -331 28 0 0 0 chr21 32425835 32425863 -12481707 + AT_rich Low_complexity Low_complexity 1 28 0 225 300 11 0 chr21 32425922 32426012 -12481558 + L1ME4a LINE L1 5728 5818 -515 1601 145 7 0 chr21 32426124 32426393 -12481177 + AluSx SINE Alu 35 305 -7 23 54 0 0 chr21 32426610 32426647 -12480923 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 32426901 32426931 -12480639 + AT_rich Low_complexity Low_complexity 1 30 0 271 224 52 43 chr21 32427513 32427629 -12479941 + L1ME4a LINE L1 5991 6107 -14 928 193 21 56 chr21 32427641 32427874 -12479696 + AluJo SINE Alu 43 267 -45 378 267 190 26 chr21 32429227 32429422 -12478148 - MIR SINE MIR 0 262 36 682 136 122 48 chr21 32429566 32429713 -12477857 + AluJb SINE Alu 144 301 -11 1230 96 0 0 chr21 32430067 32430244 -12477326 - AluSg/x SINE Alu 0 312 136 2814 142 68 37 chr21 32430279 32430848 -12476722 - L1MB5 LINE L1 0 6174 5588 255 250 29 15 chr21 32430849 32430917 -12476653 - MIR SINE MIR -110 152 84 2094 110 3 16 chr21 32430933 32431242 -12476328 + AluSx SINE Alu 1 305 -7 405 0 0 0 chr21 32432454 32432499 -12475071 + (TG)n Simple_repeat Simple_repeat 1 45 0 186 43 0 0 chr21 32432498 32432521 -12475049 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 358 305 77 13 chr21 32433316 32433466 -12474104 + MIR3 SINE MIR 11 167 -61 1051 233 40 90 chr21 32433643 32434212 -12473358 - L2 LINE L2 0 3313 2761 1689 277 103 45 chr21 32435451 32435550 -12472020 - L1MC4a LINE L1 -777 5352 5260 2131 129 0 0 chr21 32435550 32435861 -12471709 - AluSx SINE Alu -1 311 1 1689 277 103 45 chr21 32435861 32437770 -12469800 - L1MC4a LINE L1 -869 5260 3945 402 21 0 0 chr21 32437770 32437817 -12469753 + (CA)n Simple_repeat Simple_repeat 2 48 0 1689 277 103 45 chr21 32437817 32438065 -12469505 - L1MC4a LINE L1 -2184 3945 3713 236 273 13 13 chr21 32438101 32438178 -12469392 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 830 293 45 8 chr21 32438186 32438736 -12468834 + L1MEc LINE L1 2081 2614 -3601 271 247 132 33 chr21 32438731 32438913 -12468657 - L1MC4a LINE L1 -4244 2066 1867 * 2650 121 38 10 chr21 32438924 32439321 -12468249 + MSTA LTR MaLR 18 425 -3 579 313 33 15 chr21 32439400 32439737 -12467833 - L1MCa LINE L1 -4566 1744 1218 1278 197 35 21 chr21 32439754 32439949 -12467621 - AluJo SINE Alu -16 296 94 2433 126 22 0 chr21 32439949 32440305 -12467265 - THE1B LTR MaLR 0 364 1 1278 197 35 21 chr21 32440305 32440399 -12467171 - AluJo SINE Alu -218 94 3 701 289 76 12 chr21 32440404 32440836 -12466734 - L1MCa LINE L1 -4920 1390 931 1983 113 3 14 chr21 32440903 32441194 -12466376 - AluSq SINE Alu -25 288 1 22 35 0 0 chr21 32442292 32442321 -12465249 + AT_rich Low_complexity Low_complexity 1 29 0 1707 134 11 11 chr21 32442376 32442660 -12464910 - MER47A DNA MER2_type -36 330 47 1036 196 51 17 chr21 32442668 32442964 -12464606 - MER33 DNA MER1_type -30 294 1 907 270 69 78 chr21 32443017 32443212 -12464358 - L1MCa LINE L1 -2797 3332 3137 1601 158 45 14 chr21 32443212 32443504 -12464066 - AluSx SINE Alu -7 305 5 907 270 69 78 chr21 32443504 32443949 -12463621 - L1MCa LINE L1 -2992 3137 2698 572 274 63 48 chr21 32444038 32444338 -12463232 - L1MCa LINE L1 -4862 1257 963 1728 194 0 0 chr21 32444338 32444642 -12462928 - AluSx SINE Alu -8 304 1 572 274 63 48 chr21 32444642 32444818 -12462752 - L1MCa LINE L1 -5156 963 838 2212 101 0 0 chr21 32444818 32445114 -12462456 - AluSg SINE Alu -14 296 1 572 274 63 48 chr21 32445114 32445130 -12462440 - L1MCa LINE L1 -5281 838 824 545 321 102 45 chr21 32445163 32445634 -12461936 - L1MCa LINE L1 -5255 864 367 283 279 119 45 chr21 32446630 32446831 -12460739 - L1MC/D LINE L1 -2054 5754 5539 2146 101 14 0 chr21 32447751 32448048 -12459522 - AluSp SINE Alu -12 301 1 403 220 40 0 chr21 32448156 32448256 -12459314 + L1M4 LINE L1 2215 2318 -3828 472 361 6 73 chr21 32448315 32448413 -12459157 - L1MC/D LINE L1 -1986 5822 5719 2172 106 3 0 chr21 32448413 32448715 -12458855 - AluSx SINE Alu -9 303 1 472 361 6 73 chr21 32448715 32448943 -12458627 - L1MC/D LINE L1 -2089 5719 5518 276 200 136 9 chr21 32449146 32449256 -12458314 - L1MC/D LINE L1 -854 5292 5169 382 311 53 8 chr21 32449872 32450059 -12457511 + MLT1L LTR MaLR 378 606 -9 246 285 189 67 chr21 32450577 32450952 -12456618 - MLT1L LTR MaLR -164 451 31 198 0 0 0 chr21 32451707 32451729 -12455841 + (CA)n Simple_repeat Simple_repeat 2 23 0 430 291 17 0 chr21 32452244 32452361 -12455209 + MIR3 SINE MIR 82 200 -8 1002 281 87 12 chr21 32453654 32453988 -12453582 + MLT1J LTR MaLR 1 359 -152 1126 318 132 70 chr21 32454055 32454507 -12453063 - L2 LINE L2 -1064 2250 1828 1669 164 7 23 chr21 32454507 32454811 -12452759 + AluJb SINE Alu 1 299 -13 1126 318 132 70 chr21 32454811 32454942 -12452628 - L2 LINE L2 -1486 1828 1707 252 0 0 0 chr21 32454942 32454970 -12452600 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1927 126 0 0 chr21 32454974 32455245 -12452325 - AluSx SINE Alu -37 275 5 1126 318 132 70 chr21 32455245 32455784 -12451786 - L2 LINE L2 -1609 1705 1201 2116 152 34 3 chr21 32455784 32456139 -12451431 + MER47A DNA MER2_type 1 366 0 1126 318 132 70 chr21 32456139 32456791 -12450779 - L2 LINE L2 -2113 1201 357 532 222 12 80 chr21 32456792 32456882 -12450688 + MER5B DNA MER1_type 27 103 -75 609 238 85 6 chr21 32456882 32457046 -12450524 + MER45A DNA AcHobo 1 177 -1 532 222 12 80 chr21 32457046 32457117 -12450453 + MER5B DNA MER1_type 103 177 -1 2908 78 69 17 chr21 32458504 32458547 -12449023 - MLT2A1 LTR ERVL 0 444 405 450 0 0 0 chr21 32458547 32458597 -12448973 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2908 78 69 17 chr21 32458597 32458975 -12448595 - MLT2A1 LTR ERVL -39 405 1 848 98 0 0 chr21 32459102 32459225 -12448345 + L1MB4 LINE L1 5360 5482 -689 687 147 0 0 chr21 32459231 32459347 -12448223 + (GGGA)n Simple_repeat Simple_repeat 4 119 0 689 154 78 35 chr21 32459347 32459845 -12447725 + L1MB4 LINE L1 5484 5959 -221 1709 171 28 40 chr21 32459845 32460197 -12447373 - MER7A DNA MER2_type 0 346 1 689 154 78 35 chr21 32460197 32460241 -12447329 + L1MB4 LINE L1 5959 6000 -180 2000 141 0 13 chr21 32460241 32460553 -12447017 + AluSx SINE Alu 1 308 -4 689 154 78 35 chr21 32460553 32460601 -12446969 + L1MB4 LINE L1 6000 6180 0 2244 78 3 0 chr21 32461907 32462200 -12445370 + AluY SINE Alu 1 294 -17 311 117 78 0 chr21 32462232 32462309 -12445261 - Charlie7 DNA MER1_type -112 2500 2418 * 714 233 11 17 chr21 32462303 32462483 -12445087 - Charlie7 DNA MER1_type -1891 721 543 1319 120 13 139 chr21 32462489 32462798 -12444772 - AluJo SINE Alu -9 303 34 624 307 129 27 chr21 32462836 32463147 -12444423 - Charlie7 DNA MER1_type -2117 495 123 1986 186 59 35 chr21 32463147 32463603 -12443967 - MLT1C LTR MaLR 0 467 1 624 307 129 27 chr21 32463603 32463740 -12443830 - Charlie7 DNA MER1_type -2489 123 1 2079 138 43 30 chr21 32463820 32464189 -12443381 + THE1C LTR MaLR 1 374 -1 1845 169 7 0 chr21 32464363 32464653 -12442917 - AluJb SINE Alu -20 292 1 3341 170 20 2 chr21 32464702 32465291 -12442279 + L1MB5 LINE L1 5573 6172 -2 189 0 0 0 chr21 32465476 32465497 -12442073 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2190 125 0 0 chr21 32466664 32466960 -12440610 + AluY SINE Alu 1 296 -15 6246 111 7 3 chr21 32466973 32468535 -12439035 + L1PA15 LINE L1 4594 6165 0 2259 92 3 3 chr21 32469096 32469388 -12438182 + AluSg SINE Alu 11 302 -8 867 155 27 7 chr21 32469395 32469543 -12438027 - AluSg/x SINE Alu -34 276 126 1118 229 45 40 chr21 32469543 32469919 -12437651 + L1MD2 LINE L1 4862 5239 -907 2200 168 21 16 chr21 32469919 32470295 -12437275 - MSTB LTR MaLR 0 426 49 267 103 0 0 chr21 32470296 32470335 -12437235 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 2065 91 7 18 chr21 32470344 32470620 -12436950 - AluSx SINE Alu -4 308 36 308 151 19 0 chr21 32470676 32470729 -12436841 + MER5B DNA MER1_type 1 54 -124 460 34 7 0 chr21 32470751 32470811 -12436759 - MSTB LTR MaLR -365 63 1 2812 161 55 16 chr21 32470812 32471351 -12436219 + L1MD2 LINE L1 5236 5794 -565 735 166 80 20 chr21 32471346 32471497 -12436073 + L1MD2 LINE L1 6198 6357 -2 * 2311 97 0 0 chr21 32471511 32471801 -12435769 + AluY SINE Alu 1 290 -21 4512 139 10 6 chr21 32471941 32472227 -12435343 + L1MC1 LINE L1 5618 5901 -432 1751 186 45 6 chr21 32472227 32472561 -12435009 + MER7A DNA MER2_type 1 345 -1 4512 139 10 6 chr21 32472561 32472984 -12434586 + L1MC1 LINE L1 5901 6330 -3 254 114 0 0 chr21 32472995 32473030 -12434540 + U2 snRNA snRNA 1 35 -153 873 255 67 24 chr21 32475031 32475372 -12432198 - L1MC4 LINE L1 0 8042 7687 373 295 8 23 chr21 32475754 32475883 -12431687 - MIR3 SINE MIR -5 203 77 900 217 68 17 chr21 32476874 32477109 -12430461 - MIR SINE MIR -11 251 5 1678 241 63 54 chr21 32477365 32477541 -12430029 + MLT1F LTR MaLR 2 175 -367 1488 116 0 0 chr21 32477541 32477731 -12429839 + AluSc SINE Alu 1 190 -119 1678 241 63 54 chr21 32477731 32478090 -12429480 + MLT1F LTR MaLR 175 542 0 260 360 24 8 chr21 32479011 32479136 -12428434 - L2 LINE L2 0 3313 3187 324 272 66 42 chr21 32479278 32479491 -12428079 - L1ME LINE L1 -342 5779 5562 2313 110 0 0 chr21 32479694 32479994 -12427576 + AluSx SINE Alu 1 300 -12 1152 275 60 3 chr21 32479998 32480332 -12427238 - MLT1I LTR MaLR -56 353 1 2172 106 0 0 chr21 32480872 32481191 -12426379 + AluY SINE Alu 1 319 0 604 246 0 8 chr21 32481809 32481939 -12425631 - MER5B DNA MER1_type 0 178 50 2577 100 8 22 chr21 32482119 32482488 -12425082 + THE1B LTR MaLR 1 364 0 1485 204 138 49 chr21 32482496 32482946 -12424624 + MLT1D LTR MaLR 12 501 -4 7040 143 74 83 chr21 32483854 32484455 -12423115 - L1MC3 LINE L1 0 7785 7180 277 282 26 0 chr21 32484455 32484533 -12423037 - MLT1F1 LTR MaLR -442 125 46 7040 143 74 83 chr21 32484533 32485402 -12422168 - L1MC3 LINE L1 -605 7180 6251 324 0 0 0 chr21 32486689 32486725 -12420845 + (CA)n Simple_repeat Simple_repeat 1 36 0 929 317 48 32 chr21 32487591 32488156 -12419414 + L2 LINE L2 1479 2052 -1262 2393 230 56 5 chr21 32488166 32488966 -12418604 + L1MEc LINE L1 2106 2898 -3317 409 294 138 77 chr21 32488988 32489584 -12417986 - L2 LINE L2 -1152 2162 1531 213 39 0 0 chr21 32490596 32490622 -12416948 + (TA)n Simple_repeat Simple_repeat 1 26 0 547 304 136 25 chr21 32493096 32493735 -12413835 + L2 LINE L2 2249 2958 -356 432 291 55 0 chr21 32493939 32494066 -12413504 + L2 LINE L2 3180 3313 0 1599 189 33 33 chr21 32494990 32495355 -12412215 + MLT1A1 LTR MaLR 1 365 0 2520 148 40 12 chr21 32495659 32496079 -12411491 + MSTB1 LTR MaLR 1 432 0 365 270 9 43 chr21 32496160 32496275 -12411295 - MIR SINE MIR -147 115 5 2111 163 2 56 chr21 32497927 32498339 -12409231 + MLT1B LTR MaLR 1 390 0 380 279 99 45 chr21 32498345 32498567 -12409003 + L2 LINE L2 3079 3312 -1 311 225 17 25 chr21 32498970 32499144 -12408426 + (TA)n Simple_repeat Simple_repeat 1 172 0 692 175 24 0 chr21 32499941 32500067 -12407503 + FRAM SINE Alu 39 167 -9 1812 165 63 79 chr21 32500278 32500721 -12406849 - MER63B DNA MER1_type 0 436 1 252 0 0 0 chr21 32501374 32501402 -12406168 + (CA)n Simple_repeat Simple_repeat 1 28 0 505 324 40 35 chr21 32501741 32502087 -12405483 - L1ME LINE L1 -299 5822 5475 450 208 69 20 chr21 32503249 32503350 -12404220 - MER63 DNA MER1_type -330 732 1 184 332 139 8 chr21 32503512 32503756 -12403814 + L2 LINE L2 2013 2288 -1026 1794 212 53 5 chr21 32504319 32504716 -12402854 - MER63B DNA MER1_type -20 416 1 357 336 9 0 chr21 32505856 32505972 -12401598 - MIR SINE MIR -99 163 47 207 217 22 76 chr21 32506163 32506255 -12401315 + MIR SINE MIR 130 216 -46 2376 92 7 0 chr21 32506468 32506761 -12400809 - AluSq SINE Alu -18 295 1 2186 100 0 30 chr21 32507805 32508105 -12399465 + AluSx SINE Alu 1 291 -21 2038 138 14 86 chr21 32511675 32512031 -12395539 + MLT1B LTR MaLR 1 324 -66 2275 109 0 6 chr21 32512031 32512343 -12395227 + AluSg SINE Alu 1 310 0 2038 138 14 86 chr21 32512343 32512406 -12395164 + MLT1B LTR MaLR 324 390 0 504 277 84 0 chr21 32514122 32514288 -12393282 - MER5A DNA MER1_type -3 186 7 1812 187 75 67 chr21 32514803 32515311 -12392259 + MLT2B1 LTR ERVL 1 512 -8 12220 183 52 33 chr21 32515316 32517290 -12390280 + ERVL LTR ERVL 2 1937 -3827 2573 119 6 0 chr21 32517290 32517650 -12389920 - THE1B LTR MaLR 0 364 3 11005 105 33 3 chr21 32517656 32519185 -12388385 - THE1B-int LTR MaLR -4 1576 1 2726 97 6 0 chr21 32519185 32519547 -12388023 - THE1B LTR MaLR 0 364 1 12220 183 52 33 chr21 32519547 32520002 -12387568 + ERVL LTR ERVL 1940 2485 -3279 5202 152 26 18 chr21 32520001 32520854 -12386716 + ERVL LTR ERVL 3067 3926 -1838 * 5168 154 52 16 chr21 32520851 32521656 -12385914 + ERVL LTR ERVL 4536 5363 -291 * 249 108 0 0 chr21 32521656 32521693 -12385877 + (TG)n Simple_repeat Simple_repeat 2 38 0 5168 154 52 16 chr21 32521693 32521994 -12385576 + ERVL LTR ERVL 5363 5652 -2 1674 246 64 2 chr21 32521996 32522448 -12385122 + MLT2B1 LTR ERVL 1 541 -13 197 306 115 38 chr21 32522478 32522635 -12384935 + MIR SINE MIR 20 188 -74 209 320 94 16 chr21 32523329 32523457 -12384113 + L2 LINE L2 2913 3050 -222 325 310 86 17 chr21 32523733 32523849 -12383721 + L2 LINE L2 3141 3264 -8 180 111 0 0 chr21 32523851 32523878 -12383692 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 816 309 94 22 chr21 32524571 32524975 -12382595 - MLT1J1 LTR MaLR 0 446 14 271 275 49 63 chr21 32525552 32525694 -12381876 + MIR SINE MIR 82 221 -41 283 210 74 12 chr21 32526014 32526094 -12381476 - MER20B DNA MER1_type 0 783 699 1847 163 14 81 chr21 32526094 32526149 -12381421 - MLT1B LTR MaLR 0 390 333 2082 144 12 24 chr21 32526149 32526490 -12381080 + MER1B DNA MER1_type 1 337 0 1847 163 14 81 chr21 32526490 32526852 -12380718 - MLT1B LTR MaLR -57 333 1 1831 261 108 8 chr21 32526896 32527490 -12380080 - MER20B DNA MER1_type -91 692 40 35 0 0 0 chr21 32529319 32529354 -12378216 + AT_rich Low_complexity Low_complexity 1 35 0 634 299 54 17 chr21 32530282 32530523 -12377047 - MIR SINE MIR -1 261 12 1770 226 78 7 chr21 32531042 32531450 -12376120 - MLT1J1 LTR MaLR 0 446 10 5478 265 78 44 chr21 32531518 32532363 -12375207 + Charlie7 DNA MER1_type 3 818 -1794 2198 114 0 13 chr21 32532363 32532678 -12374892 - AluSx SINE Alu -1 311 1 5478 265 78 44 chr21 32532678 32534130 -12373440 + Charlie7 DNA MER1_type 818 2378 -234 5556 137 33 55 chr21 32534317 32534940 -12372630 + L1MA7 LINE L1 5157 5751 -540 1937 116 0 0 chr21 32534940 32535198 -12372372 - AluSg1 SINE Alu -12 297 40 5556 137 33 55 chr21 32535198 32535726 -12371844 + L1MA7 LINE L1 5751 6289 -2 196 307 80 0 chr21 32536346 32536421 -12371149 - MIR SINE MIR -3 259 179 385 206 0 37 chr21 32536885 32536992 -12370578 + MER5B DNA MER1_type 64 166 -12 523 126 11 0 chr21 32538278 32538373 -12369197 + MER5A DNA MER1_type 9 104 -85 2028 139 0 10 chr21 32538834 32539128 -12368442 - AluJb SINE Alu -21 291 1 480 273 19 19 chr21 32539537 32539691 -12367879 + MER5B DNA MER1_type 1 154 -24 1905 118 0 7 chr21 32539815 32540086 -12367484 - AluJo SINE Alu -18 294 26 404 113 12 75 chr21 32540086 32540166 -12367404 - MER5A DNA MER1_type -114 75 1 189 338 26 13 chr21 32540166 32540243 -12367327 + MIR SINE MIR 39 116 -92 882 215 6 0 chr21 32540256 32540419 -12367151 - MER58B DNA MER1_type -2 339 176 527 240 44 45 chr21 32540463 32540713 -12366857 - L1MEd LINE L1 -4850 1239 1037 349 264 37 95 chr21 32540772 32541045 -12366525 - L1MEd LINE L1 -5219 900 644 4560 123 45 7 chr21 32542353 32543078 -12364492 + L1MC1 LINE L1 5575 6327 -6 2296 189 62 14 chr21 32544585 32544952 -12362618 + MLT1D LTR MaLR 1 399 -106 1944 143 7 0 chr21 32544952 32545281 -12362289 + AluSx SINE Alu 1 331 0 2296 189 62 14 chr21 32545281 32545394 -12362176 + MLT1D LTR MaLR 399 505 0 2072 161 20 40 chr21 32545644 32546042 -12361528 - MLT1B LTR MaLR 0 390 1 338 272 21 72 chr21 32546329 32546564 -12361006 + L1ME3A LINE L1 4946 5168 -978 712 332 83 15 chr21 32546671 32547213 -12360357 + L1ME3A LINE L1 5318 5896 -274 210 205 39 13 chr21 32547432 32547510 -12360060 + CT-rich Low_complexity Low_complexity 4 83 0 641 121 0 0 chr21 32547696 32547795 -12359775 + L1PA16 LINE L1 6068 6166 0 439 294 72 16 chr21 32548041 32548235 -12359335 - L3 LINE CR1 -128 1449 1245 1865 160 3 7 chr21 32549229 32549516 -12358054 + AluJb SINE Alu 3 288 -24 2417 76 0 13 chr21 32551954 32552258 -12355312 - AluY SINE Alu -11 300 1 1902 158 93 25 chr21 32553325 32553724 -12353846 + MSTB LTR MaLR 1 426 0 479 241 15 29 chr21 32553725 32553862 -12353708 + Charlie8 DNA MER1_type 83 217 -2200 1370 219 144 54 chr21 32553946 32554450 -12353120 + MLT1G3 LTR MaLR 1 590 0 387 0 0 0 chr21 32555018 32555059 -12352511 + (TG)n Simple_repeat Simple_repeat 1 84 0 387 0 0 0 chr21 32555059 32555102 -12352468 + (TG)n Simple_repeat Simple_repeat 2 44 0 1441 113 24 14 chr21 32555119 32555331 -12352239 - AluSg/x SINE Alu -22 290 77 23 0 0 0 chr21 32555399 32555422 -12352148 + AT_rich Low_complexity Low_complexity 1 23 0 1094 260 116 58 chr21 32555425 32555864 -12351706 - L1ME4a LINE L1 -9 6112 5627 1600 97 31 13 chr21 32555864 32556090 -12351480 - MER30 DNA MER1_type 0 230 1 1094 260 116 58 chr21 32556090 32556253 -12351317 - L1ME4a LINE L1 -494 5627 5475 22 0 0 0 chr21 32557132 32557154 -12350416 + AT_rich Low_complexity Low_complexity 1 22 0 222 279 59 0 chr21 32558268 32558336 -12349234 + L2 LINE L2 3211 3282 -31 2434 112 123 5 chr21 32559195 32559578 -12347992 - MSTA LTR MaLR 0 428 1 309 331 68 0 chr21 32559770 32559933 -12347637 + LTR33 LTR ERVL 3 176 -345 550 241 56 20 chr21 32561473 32561668 -12345902 - MIR SINE MIR -19 243 42 2894 101 25 0 chr21 32561709 32562116 -12345454 + HSMAR1 DNA Mariner 1 417 -870 242 275 99 49 chr21 32562370 32562512 -12345058 - MIR SINE MIR -5 257 109 1706 161 51 67 chr21 32562537 32562927 -12344643 - MLT1B LTR MaLR 0 390 7 189 0 0 0 chr21 32563567 32563588 -12343982 + (A)n Simple_repeat Simple_repeat 1 21 0 2135 139 0 13 chr21 32564452 32564761 -12342809 - AluJo SINE Alu -7 305 1 238 310 26 9 chr21 32564843 32564959 -12342611 - MIR3 SINE MIR -30 178 61 189 178 0 0 chr21 32565185 32565230 -12342340 + (TG)n Simple_repeat Simple_repeat 1 45 0 2297 123 0 0 chr21 32566109 32566418 -12341152 - AluSx SINE Alu -2 310 2 541 263 43 43 chr21 32568789 32569116 -12338454 - HAL1 LINE L1 -1073 1434 1108 24 0 0 0 chr21 32569166 32569190 -12338380 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr21 32570320 32570341 -12337229 + (GGA)n Simple_repeat Simple_repeat 3 23 0 3726 182 49 23 chr21 32570792 32570966 -12336604 + L1MB5 LINE L1 5328 5496 -678 2183 115 0 3 chr21 32570966 32571278 -12336292 + AluSx SINE Alu 1 311 -1 3726 182 49 23 chr21 32571278 32571901 -12335669 + L1MB5 LINE L1 5496 6146 -28 991 135 0 13 chr21 32571905 32572061 -12335509 + FRAM SINE Alu 12 165 -11 322 339 126 0 chr21 32572145 32572272 -12335298 - MIR SINE MIR 0 262 120 782 187 26 26 chr21 32573267 32573422 -12334148 - FRAM SINE Alu -11 155 1 413 296 78 7 chr21 32573492 32573634 -12333936 + MER117 DNA MER1_type 19 170 -27 1941 145 3 0 chr21 32576869 32577179 -12330391 + AluSx SINE Alu 1 311 -1 1974 90 83 0 chr21 32578241 32578529 -12329041 + AluJb SINE Alu 1 312 0 2452 126 0 3 chr21 32578745 32579111 -12328459 + L1PA13 LINE L1 5788 6152 -11 315 0 0 0 chr21 32579134 32579169 -12328401 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 209 200 0 0 chr21 32579174 32579214 -12328356 + L2 LINE L2 3215 3254 -18 2019 133 3 0 chr21 32579585 32579885 -12327685 - AluSx SINE Alu -11 301 1 304 312 0 32 chr21 32579925 32579991 -12327579 + MIR3 SINE MIR 116 180 -28 1651 171 7 7 chr21 32579991 32580290 -12327280 - AluJb SINE Alu -13 299 1 304 312 0 32 chr21 32580290 32580316 -12327254 + MIR3 SINE MIR 180 205 -3 2750 208 91 71 chr21 32580320 32580931 -12326639 + L1MD2 LINE L1 5464 6061 -298 1772 142 0 28 chr21 32580931 32581219 -12326351 + AluJo SINE Alu 1 280 -32 2750 208 91 71 chr21 32581219 32581244 -12326326 + L1MD2 LINE L1 6061 6084 -275 2035 121 3 0 chr21 32581244 32581533 -12326037 + AluSx SINE Alu 2 291 -21 2750 208 91 71 chr21 32581533 32581772 -12325798 + L1MD2 LINE L1 6084 6359 0 2862 92 16 35 chr21 32582626 32583059 -12324511 + MSTA LTR MaLR 4 428 0 814 127 24 8 chr21 32583235 32583361 -12324209 - FLAM_C SINE Alu -5 128 1 554 142 41 173 chr21 32583377 32583574 -12323996 - L1MA9 LINE L1 -38 6274 6104 280 261 23 11 chr21 32584899 32584987 -12322583 - L2 LINE L2 -66 3247 3159 242 254 191 0 chr21 32585013 32585123 -12322447 - MER91C DNA MER1_type -7 133 3 180 229 114 14 chr21 32585162 32585232 -12322338 - L2 LINE L2 -262 3010 2934 1281 164 13 21 chr21 32585236 32585474 -12322096 + MLT1D LTR MaLR 1 236 -269 1994 134 13 7 chr21 32585477 32585838 -12321732 + AluSx SINE Alu 1 363 0 1305 195 45 69 chr21 32585838 32586171 -12321399 + MLT1D LTR MaLR 181 505 0 439 326 62 22 chr21 32586197 32586473 -12321097 - L2 LINE L2 -440 2874 2588 23 33 0 0 chr21 32586497 32586527 -12321043 + AT_rich Low_complexity Low_complexity 1 30 0 2015 115 0 0 chr21 32586527 32586813 -12320757 - AluSx SINE Alu -26 286 1 951 244 54 60 chr21 32587190 32587505 -12320065 - L2 LINE L2 -789 2525 2213 238 205 122 96 chr21 32587506 32587522 -12320048 - L1MA10 LINE L1 -3 6331 6316 3109 212 99 27 chr21 32587522 32588181 -12319389 - L1ME1 LINE L1 -5 6230 5491 1890 133 14 3 chr21 32588181 32588475 -12319095 + AluSx SINE Alu 1 297 -15 3109 212 99 27 chr21 32588475 32588815 -12318755 - L1ME1 LINE L1 -744 5491 5177 522 282 84 18 chr21 32588821 32589201 -12318369 - L1ME1 LINE L1 -4920 1476 1072 225 299 0 0 chr21 32589239 32589316 -12318254 - L1MEc LINE L1 -2696 3519 3443 421 304 88 16 chr21 32589330 32589468 -12318102 - L1MEc LINE L1 -2945 3270 3143 1508 183 3 43 chr21 32589468 32589791 -12317779 - AluJo SINE Alu -2 310 1 421 304 88 16 chr21 32589791 32590161 -12317409 - L1MEc LINE L1 -3072 3143 2725 408 244 74 130 chr21 32590442 32590515 -12317055 - L1MEc LINE L1 -3976 2420 2344 1955 148 0 0 chr21 32590515 32590819 -12316751 - AluSx SINE Alu -8 304 1 408 244 74 130 chr21 32590819 32590939 -12316631 - L1MEc LINE L1 -4052 2344 2219 1873 209 8 6 chr21 32590939 32591303 -12316267 - MLT1A1 LTR MaLR 0 365 1 408 244 74 130 chr21 32591303 32591339 -12316231 - L1MEc LINE L1 -4177 2219 2183 2170 94 0 0 chr21 32591339 32591637 -12315933 - AluSx SINE Alu -14 298 1 408 244 74 130 chr21 32591637 32591704 -12315866 - L1MEc LINE L1 -4213 2183 2139 447 245 37 68 chr21 32591758 32591921 -12315649 - MIR SINE MIR -13 249 92 253 258 258 8 chr21 32592577 32592701 -12314869 + MIR SINE MIR 107 261 -1 1652 174 13 10 chr21 32592808 32593112 -12314458 + AluJo SINE Alu 1 305 -7 1994 139 0 3 chr21 32593384 32593780 -12313790 - AluSx SINE Alu 0 395 1 2351 70 0 13 chr21 32594551 32594864 -12312706 + AluY SINE Alu 1 309 -2 382 324 14 36 chr21 32595135 32595274 -12312296 + MIR3 SINE MIR 40 175 -33 350 183 14 0 chr21 32595325 32595396 -12312174 + MER116 DNA Mariner 2 73 -7 1743 139 25 0 chr21 32595508 32595788 -12311782 - AluJo SINE Alu -25 287 1 333 291 68 0 chr21 32596530 32596633 -12310937 - L2 LINE L2 -5 3267 3158 2424 53 13 0 chr21 32596761 32597065 -12310505 + AluY SINE Alu 1 308 -3 607 178 112 0 chr21 32597242 32597349 -12310221 + FLAM_C SINE Alu 1 119 -24 26 64 0 0 chr21 32597349 32597396 -12310174 + AT_rich Low_complexity Low_complexity 1 47 0 217 303 113 72 chr21 32597974 32598169 -12309401 + L2 LINE L2 3063 3265 -7 * 261 261 34 45 chr21 32598139 32598227 -12309343 - L2 LINE L2 -1 3271 3185 288 0 0 0 chr21 32598261 32598293 -12309277 + (CA)n Simple_repeat Simple_repeat 1 32 0 333 167 13 64 chr21 32598293 32598363 -12309207 + L1MCa LINE L1 1996 2063 -4363 329 289 24 0 chr21 32598294 32598377 -12309193 - L1MC4 LINE L1 -1350 6692 6608 * 2260 81 0 0 chr21 32598382 32598677 -12308893 + AluY SINE Alu 1 295 -16 388 303 123 77 chr21 32599005 32599331 -12308239 - L2 LINE L2 -217 3055 2696 2094 115 0 0 chr21 32599331 32599626 -12307944 + AluSx SINE Alu 1 295 -17 388 303 123 77 chr21 32599626 32599797 -12307773 - L2 LINE L2 -576 2696 2534 302 216 156 82 chr21 32600106 32600337 -12307233 - L1ME4a LINE L1 -14 6107 5860 1564 114 0 13 chr21 32601509 32601746 -12305824 - AluJb SINE Alu -2 310 77 181 149 184 115 chr21 32602082 32602169 -12305401 - MIR3 SINE MIR -10 198 106 1948 112 0 0 chr21 32602251 32602518 -12305052 + AluSx SINE Alu 1 267 -45 443 143 52 0 chr21 32603135 32603212 -12304358 + MER31B LTR ERV1 1 81 -385 969 208 223 88 chr21 32603213 32603795 -12303775 + MER67B LTR ERV1 1 661 0 2289 99 0 0 chr21 32603832 32604134 -12303436 + AluSx SINE Alu 1 302 -10 583 303 53 19 chr21 32604493 32604701 -12302869 + MIR SINE MIR 8 222 -40 397 291 13 46 chr21 32604787 32604938 -12302632 + MIR SINE MIR 1 146 -116 270 217 14 0 chr21 32606084 32606153 -12301417 - MIR SINE MIR -61 147 78 243 383 17 9 chr21 32607228 32607343 -12300227 - MIR SINE MIR -63 145 30 394 167 0 0 chr21 32607544 32607610 -12299960 - MIR SINE MIR -123 139 74 492 237 173 6 chr21 32608383 32608539 -12299031 + MIR SINE MIR 31 212 -50 254 290 56 28 chr21 32608594 32608701 -12298869 - MIR3 SINE MIR -9 199 90 823 170 0 35 chr21 32609867 32610008 -12297562 - FLAM_C SINE Alu -5 138 3 1181 230 48 25 chr21 32610033 32610390 -12297180 + MLT1A1 LTR MaLR 1 365 0 576 213 24 8 chr21 32611433 32611560 -12296010 - MER5A DNA MER1_type -39 150 22 2064 116 0 7 chr21 32611772 32612075 -12295495 + AluJb SINE Alu 1 301 -11 1546 165 0 8 chr21 32612300 32612561 -12295009 + AluJb SINE Alu 1 259 -53 2106 97 3 3 chr21 32613026 32613314 -12294256 + AluSg SINE Alu 1 288 -22 192 366 45 0 chr21 32614416 32614528 -12293042 + MIR3 SINE MIR 81 197 -11 335 311 78 56 chr21 32615023 32615203 -12292367 - MIR3 SINE MIR -7 201 18 446 279 8 8 chr21 32615352 32615474 -12292096 + L2 LINE L2 3149 3270 -2 1573 119 18 128 chr21 32616537 32616865 -12290705 + AluJb SINE Alu 2 293 -9 254 273 23 34 chr21 32616888 32616900 -12290670 + MER5A DNA MER1_type 5 15 -174 227 286 31 70 chr21 32616900 32617014 -12290556 - MER5A DNA MER1_type -2 187 61 1616 165 0 32 chr21 32617014 32617323 -12290247 - AluJo SINE Alu -13 299 1 227 286 31 70 chr21 32617323 32617355 -12290215 - MER5A DNA MER1_type -128 61 29 253 294 78 39 chr21 32617495 32617597 -12289973 - MIR SINE MIR 0 262 157 297 75 0 0 chr21 32617822 32617862 -12289708 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2182 102 7 0 chr21 32618190 32618493 -12289077 + AluSx SINE Alu 1 305 -7 2094 111 6 16 chr21 32618848 32619163 -12288407 + AluSx SINE Alu 1 312 0 1016 165 75 14 chr21 32620748 32620960 -12286610 - AluJo SINE Alu -3 309 85 219 36 0 0 chr21 32621092 32621120 -12286450 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 517 204 48 0 chr21 32621120 32621223 -12286347 - LTR8A LTR ERV1 -56 671 564 2031 99 19 25 chr21 32622264 32622578 -12284992 + AluSx SINE Alu 1 312 0 318 297 68 8 chr21 32622586 32622704 -12284866 + MER5A DNA MER1_type 63 187 -2 431 274 82 0 chr21 32622864 32622999 -12284571 - MIR SINE MIR -108 154 9 271 77 19 19 chr21 32623201 32623253 -12284317 + (CA)n Simple_repeat Simple_repeat 2 53 0 1420 153 220 38 chr21 32623264 32623682 -12283888 - LTR54B LTR ERV1 -2 496 3 192 242 147 21 chr21 32623924 32624019 -12283551 + L2 LINE L2 3205 3311 -2 1166 252 81 41 chr21 32624050 32624443 -12283127 + MLT1J LTR MaLR 1 409 -102 181 296 99 68 chr21 32624579 32624741 -12282829 + MIR SINE MIR 41 207 -55 2222 104 0 0 chr21 32625505 32625803 -12281767 - AluSx SINE Alu -14 298 1 229 375 12 8 chr21 32625823 32625944 -12281626 - MIR SINE MIR -59 149 28 228 0 0 0 chr21 32626456 32626482 -12281088 + MIR SINE MIR 115 140 -122 213 130 0 148 chr21 32626458 32626512 -12281058 + MIR3 SINE MIR 118 163 -45 * 1866 132 4 0 chr21 32626595 32626912 -12280658 - AluSx SINE Alu 0 319 2 897 198 36 10 chr21 32627226 32627418 -12280152 + MLT1D LTR MaLR 1 197 -308 524 207 18 0 chr21 32627447 32627558 -12280012 + MLT1D LTR MaLR 277 389 -116 1897 148 3 0 chr21 32627598 32627902 -12279668 - AluSx SINE Alu -2 310 6 466 181 7 34 chr21 32627920 32628069 -12279501 + C-rich Low_complexity Low_complexity 4 148 0 282 247 39 0 chr21 32628070 32628147 -12279423 + CT-rich Low_complexity Low_complexity 1 80 0 975 149 42 6 chr21 32628147 32628315 -12279255 - AluJo SINE Alu -12 300 127 329 190 0 0 chr21 32628315 32628373 -12279197 + MLT1D LTR MaLR 448 505 0 1546 191 30 3 chr21 32628661 32628964 -12278606 - AluSx SINE Alu -1 311 1 251 169 17 34 chr21 32628985 32629044 -12278526 - L1MC1 LINE L1 0 6333 6276 1708 166 10 3 chr21 32629102 32629398 -12278172 - AluJo SINE Alu -14 298 1 402 266 0 0 chr21 32631450 32631529 -12276041 - L2 LINE L2 0 3272 3194 2372 72 0 0 chr21 32631708 32632015 -12275555 - AluY SINE Alu 0 311 5 1321 123 45 221 chr21 32632864 32633078 -12274492 + L1PB4 LINE L1 5772 6022 -134 551 156 11 0 chr21 32633078 32633168 -12274402 + AluSq/x SINE Alu 41 131 -182 1725 121 99 7 chr21 32633174 32633447 -12274123 + AluSx SINE Alu 1 298 -14 1321 123 45 221 chr21 32633447 32633601 -12273969 + L1PB4 LINE L1 6027 6154 -2 412 256 136 72 chr21 32633611 32633861 -12273709 + L1MC4a LINE L1 6159 6424 -1384 2073 122 7 0 chr21 32633894 32634188 -12273382 - AluSx SINE Alu -16 296 1 198 112 10 71 chr21 32635413 32635511 -12272059 + (CAAAAA)n Simple_repeat Simple_repeat 6 97 0 226 194 40 48 chr21 32636135 32636259 -12271311 + (CAAA)n Simple_repeat Simple_repeat 3 125 0 187 362 55 16 chr21 32636462 32636589 -12270981 - MIR SINE MIR -3 259 128 2064 147 51 58 chr21 32636725 32637140 -12270430 + LOR1b LTR ERV1 1 412 -49 1878 134 0 24 chr21 32637147 32637445 -12270125 - AluSx SINE Alu -21 291 1 275 266 0 0 chr21 32637447 32637511 -12270059 + (TG)n Simple_repeat Simple_repeat 2 65 0 571 192 54 36 chr21 32637857 32638024 -12269546 - MER5B DNA MER1_type -8 170 1 713 268 88 23 chr21 32638309 32638693 -12268877 + MLT1I LTR MaLR 1 409 0 228 227 107 0 chr21 32638876 32638951 -12268619 - MIR SINE MIR -97 111 29 307 200 0 0 chr21 32639099 32639159 -12268411 + MIR SINE MIR 73 132 -130 216 0 0 0 chr21 32640240 32640264 -12267306 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 314 231 0 13 chr21 32641004 32641082 -12266488 + MER67B LTR ERV1 46 122 -539 1467 206 66 39 chr21 32641409 32641773 -12265797 - MLT1A2 LTR MaLR 0 374 1 262 255 20 49 chr21 32642132 32642234 -12265336 + LTR41 LTR ERVL 654 752 -21 2465 110 56 0 chr21 32642585 32642940 -12264630 - THE1C LTR MaLR 0 375 1 2258 104 0 0 chr21 32643619 32643926 -12263644 - AluSx SINE Alu -5 307 1 254 281 0 0 chr21 32643973 32644030 -12263540 + MLT1K LTR MaLR 142 198 -390 408 40 0 0 chr21 32644275 32644325 -12263245 + (CA)n Simple_repeat Simple_repeat 1 50 0 714 261 93 72 chr21 32645577 32645809 -12261761 - MLT1K LTR MaLR -1 587 341 3715 152 6 42 chr21 32645809 32646468 -12261102 + MER41B LTR ERV1 1 635 0 714 261 93 72 chr21 32646468 32646653 -12260917 - MLT1K LTR MaLR -247 341 161 31 0 0 0 chr21 32646676 32646707 -12260863 + AT_rich Low_complexity Low_complexity 1 31 0 240 163 0 0 chr21 32647072 32647115 -12260455 + (ATG)n Simple_repeat Simple_repeat 1 43 0 260 246 0 23 chr21 32647650 32647825 -12259745 + (CCA)n Simple_repeat Simple_repeat 3 173 0 329 319 79 53 chr21 32647861 32648051 -12259519 - MIR SINE MIR -42 220 36 1469 147 29 82 chr21 32648083 32648251 -12259319 - AluJb SINE Alu -22 290 143 1919 110 4 11 chr21 32648251 32648583 -12258987 + AluSg SINE Alu 1 330 0 1469 147 29 82 chr21 32648583 32648719 -12258851 - AluJb SINE Alu -169 143 1 1368 153 54 67 chr21 32649897 32650211 -12257359 - AluJo SINE Alu 0 312 3 1764 154 44 0 chr21 32650363 32650661 -12256909 + AluJo SINE Alu 1 311 -1 1872 133 23 3 chr21 32650904 32651205 -12256365 + AluSx SINE Alu 2 308 -4 1073 110 0 0 chr21 32651229 32651383 -12256187 + AluSg/x SINE Alu 156 309 -3 323 303 92 81 chr21 32651383 32651839 -12255731 + L1MC4a LINE L1 4751 5211 -935 513 237 46 12 chr21 32651874 32652047 -12255523 + L1MC4a LINE L1 5296 5474 -2334 890 278 131 30 chr21 32652297 32652732 -12254838 + L1MC4a LINE L1 5531 6009 -1799 563 257 136 53 chr21 32654815 32654845 -12252725 + L1MC4a LINE L1 5741 5767 -2041 2892 153 43 5 chr21 32654845 32655406 -12252164 + L1MB8 LINE L1 5596 6177 -1 563 257 136 53 chr21 32655406 32655418 -12252152 + L1MC4a LINE L1 5767 5777 -2031 2225 92 0 3 chr21 32655418 32655712 -12251858 + AluSp SINE Alu 1 293 -20 563 257 136 53 chr21 32655712 32656065 -12251505 + L1MC4a LINE L1 5777 6170 -1638 430 242 108 0 chr21 32656243 32656363 -12251207 + MIR3 SINE MIR 30 162 -46 432 221 86 21 chr21 32656727 32656867 -12250703 - MIR SINE MIR -80 182 34 652 205 149 10 chr21 32656996 32657191 -12250379 + L1ME3A LINE L1 5941 6162 -8 864 168 54 0 chr21 32657215 32657382 -12250188 - AluSg/x SINE Alu -1 311 136 240 420 0 9 chr21 32658372 32658484 -12249086 + MIR3 SINE MIR 6 116 -92 210 37 0 0 chr21 32658488 32658515 -12249055 + (A)n Simple_repeat Simple_repeat 1 27 0 2004 129 10 0 chr21 32658999 32659308 -12248262 - AluSx SINE Alu 0 312 1 481 314 46 16 chr21 32660118 32660312 -12247258 - L2 LINE L2 -607 2707 2508 1314 235 83 41 chr21 32660327 32660737 -12246833 + MLT1C LTR MaLR 6 438 -29 2831 180 19 2 chr21 32660737 32661215 -12246355 - MER66B LTR ERV1 0 486 1 1314 235 83 41 chr21 32661215 32661247 -12246323 + MLT1C LTR MaLR 438 467 0 458 269 36 73 chr21 32661350 32661625 -12245945 - L2 LINE L2 -4 3309 3045 860 183 98 64 chr21 32661761 32661996 -12245574 + L1MB5 LINE L1 5367 5609 -569 839 181 0 0 chr21 32662000 32662138 -12245432 + FLAM_C SINE Alu 3 140 -3 1982 190 55 21 chr21 32662153 32662589 -12244981 + L1MB5 LINE L1 5599 6049 -125 232 244 13 51 chr21 32662631 32662709 -12244861 - MIR SINE MIR -5 257 183 381 312 106 13 chr21 32662709 32662946 -12244624 + L1MC1 LINE L1 2265 2523 -3623 1463 99 9 5 chr21 32663000 32663211 -12244359 + AluSg SINE Alu 1 212 -98 2389 73 0 10 chr21 32663212 32663526 -12244044 + AluY SINE Alu 1 311 0 980 223 66 9 chr21 32663527 32664436 -12243134 + L1MB7 LINE L1 5202 6183 -1 1098 300 65 83 chr21 32664448 32664953 -12242617 + L1MC1 LINE L1 3067 3557 -2589 7270 53 12 6 chr21 32664953 32666550 -12241020 - L1PA5 LINE L1 -1 6153 4551 1098 300 65 83 chr21 32666550 32666770 -12240800 + L1MC1 LINE L1 3557 3779 -2367 442 301 107 42 chr21 32666839 32667390 -12240180 + L1MC1 LINE L1 4033 4619 -1527 1974 110 7 3 chr21 32667666 32667948 -12239622 + AluSx SINE Alu 1 304 0 190 0 0 0 chr21 32667948 32667969 -12239601 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 342 290 63 67 chr21 32668260 32668428 -12239142 + L1MC1 LINE L1 4630 4797 -1349 2070 112 0 0 chr21 32668428 32668714 -12238856 + AluSx SINE Alu 1 286 -26 216 97 0 0 chr21 32668717 32668748 -12238822 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 342 290 63 67 chr21 32668748 32669189 -12238381 + L1MC1 LINE L1 4799 5241 -905 873 116 0 68 chr21 32669263 32669409 -12238161 + AluSx SINE Alu 48 183 -129 602 121 0 0 chr21 32669409 32669492 -12238078 + MLT2A1 LTR ERVL 312 394 -50 303 93 0 0 chr21 32669494 32669537 -12238033 + (TG)n Simple_repeat Simple_repeat 2 44 0 404 251 10 0 chr21 32669552 32669651 -12237919 - L1MC4 LINE L1 -1336 6986 1995 333 240 93 0 chr21 32669656 32669731 -12237839 - L1MC4 LINE L1 -1340 6702 6621 407 91 0 0 chr21 32669731 32669786 -12237784 + MLT2A1 LTR ERVL 390 444 0 3931 141 14 6 chr21 32669791 32670422 -12237148 + L1MC1 LINE L1 5448 6083 -250 3091 152 19 24 chr21 32670422 32670785 -12236785 + MER6A DNA MER2_type 1 362 -503 2008 144 0 0 chr21 32670785 32671097 -12236473 - AluSx SINE Alu 0 312 1 3091 152 19 24 chr21 32671097 32671267 -12236303 + MER6A DNA MER2_type 362 531 -74 816 210 72 46 chr21 32671296 32671558 -12236012 + MLT1C LTR MaLR 191 459 -8 378 287 42 30 chr21 32672264 32672431 -12235139 - MER91A DNA MER1_type -13 183 15 2231 219 65 10 chr21 32672439 32672699 -12234871 + LTR53 LTR ERVL 2 246 -273 2708 102 8 3 chr21 32672699 32673072 -12234498 - THE1C LTR MaLR 0 375 1 2231 219 65 10 chr21 32673072 32673300 -12234270 + LTR53 LTR ERVL 246 517 -2 1617 121 0 161 chr21 32674004 32674138 -12233432 + AluJo SINE Alu 2 45 -257 1922 99 3 25 chr21 32674138 32674421 -12233149 + AluSq SINE Alu 1 277 -36 1617 121 0 161 chr21 32674421 32674641 -12232929 + AluJo SINE Alu 45 299 -3 497 127 17 42 chr21 32675036 32675154 -12232416 + T-rich Low_complexity Low_complexity 3 117 0 2195 117 0 0 chr21 32675156 32675464 -12232106 - AluSx SINE Alu 0 312 5 315 339 46 0 chr21 32675548 32675657 -12231913 + Charlie8 DNA MER1_type 12 125 -2292 1340 211 137 22 chr21 32677860 32678263 -12229307 - MLT1C LTR MaLR -16 451 3 235 204 0 0 chr21 32678475 32678519 -12229051 + (TG)n Simple_repeat Simple_repeat 2 45 0 816 241 175 32 chr21 32678687 32679127 -12228443 - MLT1J LTR MaLR 0 511 9 252 0 0 0 chr21 32680914 32680942 -12226628 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1705 173 0 3 chr21 32681081 32681376 -12226194 - AluJb SINE Alu -8 304 11 291 348 33 51 chr21 32682675 32682924 -12224646 + MIR SINE MIR 3 250 -12 713 214 51 67 chr21 32683667 32683710 -12223860 - MER5A DNA MER1_type -14 175 133 1964 107 0 0 chr21 32683710 32683980 -12223590 + AluSx SINE Alu 22 291 -21 713 214 51 67 chr21 32683980 32684114 -12223456 - MER5A DNA MER1_type -56 133 1 * 787 230 6 12 chr21 32684114 32684264 -12223306 - MER5B DNA MER1_type -29 149 1 204 301 68 0 chr21 32684873 32684946 -12222624 - MIR3 SINE MIR -42 166 89 2138 88 20 0 chr21 32684968 32685263 -12222307 + L1PA10 LINE L1 5868 6168 0 221 233 82 41 chr21 32687243 32687316 -12220254 + MIR SINE MIR 88 163 -99 1840 137 17 13 chr21 32687379 32687679 -12219891 - AluSx SINE Alu -11 301 1 213 125 25 75 chr21 32688112 32688192 -12219378 + (TTTA)n Simple_repeat Simple_repeat 3 78 0 237 65 0 0 chr21 32688213 32688244 -12219326 + (TG)n Simple_repeat Simple_repeat 2 32 0 601 274 38 52 chr21 32688315 32688527 -12219043 + L2 LINE L2 3098 3306 -7 227 200 36 18 chr21 32688909 32688964 -12218606 - L3 LINE CR1 -177 1400 1345 206 268 85 49 chr21 32690149 32690231 -12217339 - L2 LINE L2 -3 3269 3185 327 251 74 128 chr21 32690720 32690778 -12216792 + L1ME4a LINE L1 5593 5653 -468 2225 91 0 7 chr21 32690778 32691087 -12216483 - AluSx SINE Alu -3 309 3 327 251 74 128 chr21 32691087 32691303 -12216267 + L1ME4a LINE L1 5653 5830 -291 2120 112 3 3 chr21 32691303 32691608 -12215962 + AluSq SINE Alu 1 305 -8 327 251 74 128 chr21 32691608 32691831 -12215739 + L1ME4a LINE L1 5830 6064 -57 2502 112 16 16 chr21 32691857 32692232 -12215338 - THE1C LTR MaLR 0 375 1 203 273 18 0 chr21 32692735 32692790 -12214780 + CT-rich Low_complexity Low_complexity 3 58 0 1382 173 46 14 chr21 32693295 32693579 -12213991 - AluJo SINE Alu -19 293 1 4574 247 46 36 chr21 32697800 32699382 -12208188 + L1PA12 LINE L1 2 2658 -4926 * 4979 85 25 67 chr21 32699381 32700183 -12207387 + L1PA11 LINE L1 5313 6080 -94 26 83 0 28 chr21 32700442 32700550 -12207020 + AT_rich Low_complexity Low_complexity 1 105 0 861 290 73 52 chr21 32700874 32701945 -12205625 + L1M4 LINE L1 2110 3202 -2944 711 291 55 32 chr21 32702072 32702640 -12204930 + L1MC3 LINE L1 1069 1649 -4747 9419 244 37 14 chr21 32702847 32704520 -12203050 + L1MC3 LINE L1 2614 4380 -1835 2115 161 5 45 chr21 32704520 32704924 -12202646 - MLT1B LTR MaLR -2 388 1 9419 244 37 14 chr21 32704924 32706042 -12201528 + L1MC3 LINE L1 4380 5470 -745 721 195 8 0 chr21 32706066 32706194 -12201376 + FAM SINE Alu 30 158 -27 195 100 0 0 chr21 32706195 32706225 -12201345 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9104 171 76 95 chr21 32706225 32706768 -12200802 + L1MC3 LINE L1 5473 6025 -1829 2920 39 14 0 chr21 32706768 32707109 -12200461 + L1PA5 LINE L1 5786 6145 -9 9104 171 76 95 chr21 32707109 32708339 -12199231 + L1MC3 LINE L1 6025 7276 -578 284 286 11 11 chr21 32708339 32708430 -12199140 + MLT1F1 LTR MaLR 35 125 -442 9104 171 76 95 chr21 32708430 32708915 -12198655 + L1MC3 LINE L1 7276 7778 -76 1710 62 0 9 chr21 32708915 32709140 -12198430 + L1PA5 LINE L1 5931 6153 -1 9104 171 76 95 chr21 32709140 32709216 -12198354 + L1MC3 LINE L1 7778 7854 0 588 265 48 86 chr21 32709220 32709556 -12198014 + L1ME3A LINE L1 5817 6139 -31 21 0 0 0 chr21 32709638 32709659 -12197911 + AT_rich Low_complexity Low_complexity 1 21 0 1023 82 0 7 chr21 32709661 32709796 -12197774 + AluSq/x SINE Alu 3 136 -177 2083 70 0 18 chr21 32709796 32709917 -12197653 + AluSx SINE Alu 17 139 -175 2058 102 0 3 chr21 32709917 32710200 -12197370 + AluSg SINE Alu 17 298 -12 2083 70 0 18 chr21 32710200 32710381 -12197189 + AluSx SINE Alu 139 314 0 1887 139 38 0 chr21 32710600 32710887 -12196683 - AluSx SINE Alu -14 298 1 2427 25 0 0 chr21 32711289 32711567 -12196003 + AluYb8 SINE Alu 35 312 -6 808 283 62 81 chr21 32711716 32712037 -12195533 - L2 LINE L2 -703 2611 2302 1694 185 0 10 chr21 32712037 32712339 -12195231 + AluJo SINE Alu 1 299 -13 808 283 62 81 chr21 32712339 32712550 -12195020 - L2 LINE L2 -1012 2302 2089 603 185 69 8 chr21 32712552 32712682 -12194888 - MER89 LTR ERV1 -5 554 417 1279 185 27 182 chr21 32712687 32713379 -12194191 - LTR34 LTR ERV1 -4 695 1 * 2207 196 19 7 chr21 32713379 32713791 -12193779 - MER89 LTR ERV1 -140 419 3 443 276 32 6 chr21 32713794 32713950 -12193620 - L2 LINE L2 -1216 2098 1939 4646 108 13 14 chr21 32714547 32715253 -12192317 + L1MA2 LINE L1 5600 6304 0 2151 96 14 0 chr21 32715472 32715765 -12191805 + AluSq SINE Alu 1 297 -16 235 321 87 25 chr21 32715835 32716031 -12191539 + L2 LINE L2 2553 2760 -554 285 176 227 42 chr21 32716082 32716201 -12191369 + MER5B DNA MER1_type 3 143 -35 1492 158 156 66 chr21 32716502 32717001 -12190569 + MER34C LTR ERV1 12 542 0 2282 138 112 47 chr21 32717027 32717098 -12190472 - LTR39 LTR ERV1 -97 686 621 812 39 0 102 chr21 32717098 32717225 -12190345 - L1PA5 LINE L1 0 6154 6041 2136 122 0 0 chr21 32717231 32717543 -12190027 - AluSx SINE Alu 0 312 1 2282 138 112 47 chr21 32717543 32717893 -12189677 - LTR39 LTR ERV1 -166 617 230 687 265 119 54 chr21 32717893 32718153 -12189417 - LTR28 LTR ERV1 0 1755 1479 * 1421 232 221 65 chr21 32718133 32718918 -12188652 - LTR28 LTR ERV1 -291 729 2 1505 179 12 38 chr21 32718935 32719254 -12188316 + AluJb SINE Alu 1 311 -1 1395 113 40 9 chr21 32719254 32719476 -12188094 - LTR39 LTR ERV1 -554 229 1 1262 199 130 13 chr21 32719667 32720205 -12187365 + MER67C LTR ERV1 1 710 0 1111 201 173 31 chr21 32720380 32720768 -12186802 - LTR56 LTR ERV1 -2 443 1 2095 109 7 0 chr21 32720903 32721025 -12186545 + AluSg SINE Alu 1 121 -189 189 0 0 0 chr21 32721025 32721046 -12186524 + (CA)n Simple_repeat Simple_repeat 2 22 0 2095 109 7 0 chr21 32721046 32721227 -12186343 + AluSg SINE Alu 121 306 -4 313 277 27 0 chr21 32721544 32721656 -12185914 - L1MC5 LINE L1 -520 7441 7327 1851 256 74 29 chr21 32721677 32721688 -12185882 - L1MC4 LINE L1 -602 7440 7431 3172 77 29 25 chr21 32721688 32722130 -12185440 + MLT2A1 LTR ERVL 1 444 0 1851 256 74 29 chr21 32722130 32722805 -12184765 - L1MC4 LINE L1 -611 7431 6723 17815 158 23 17 chr21 32722873 32723722 -12183848 - L1PB1 LINE L1 0 6867 6025 198 0 0 0 chr21 32723722 32723744 -12183826 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 17815 158 23 17 chr21 32723744 32726139 -12181431 - L1PB1 LINE L1 -842 6025 3647 2216 84 3 0 chr21 32726139 32726435 -12181135 - AluY SINE Alu -14 297 1 17815 158 23 17 chr21 32726435 32730025 -12177545 - L1PB1 LINE L1 -3220 3647 1 518 111 12 25 chr21 32730033 32730114 -12177456 - AluJo SINE Alu -170 142 63 34 65 0 0 chr21 32730129 32730191 -12177379 + AT_rich Low_complexity Low_complexity 1 62 0 209 237 17 17 chr21 32730232 32730291 -12177279 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1039 261 118 58 chr21 32730292 32730967 -12176603 - L1MC4a LINE L1 -1349 6459 5744 247 274 32 0 chr21 32732336 32732398 -12175172 + L2 LINE L2 3193 3256 -16 192 77 0 0 chr21 32732402 32732428 -12175142 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 4447 194 38 10 chr21 32732969 32733792 -12173778 - MER21B LTR ERV1 -17 846 1 3875 177 40 24 chr21 32734360 32735158 -12172412 + L1MB8 LINE L1 5367 6177 -1 2206 97 0 3 chr21 32735198 32735497 -12172073 - AluSx SINE Alu -14 298 1 352 316 83 105 chr21 32736699 32737050 -12170520 - L2 LINE L2 -4 3268 2926 185 352 101 22 chr21 32737224 32737451 -12170119 - L2 LINE L2 -686 2628 2384 1698 165 0 3 chr21 32738093 32738384 -12169186 - AluJb SINE Alu -16 296 7 180 0 0 0 chr21 32738405 32738425 -12169145 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2041 108 0 0 chr21 32738425 32738703 -12168867 - AluSx SINE Alu -32 280 3 290 216 45 11 chr21 32738983 32739071 -12168499 - MLT1G LTR MaLR 0 590 500 1518 189 91 147 chr21 32739109 32739503 -12168067 - MLT1E1 LTR MaLR -44 610 196 2332 76 0 16 chr21 32739503 32739819 -12167751 - AluY SINE Alu 0 311 1 1229 109 16 6 chr21 32739821 32740004 -12167566 - L1PA13 LINE L1 -5 6158 5974 1518 189 91 147 chr21 32740004 32740252 -12167318 - MLT1E1 LTR MaLR -459 195 1 446 283 102 9 chr21 32740406 32740675 -12166895 + L2 LINE L2 2783 3068 -245 675 114 123 0 chr21 32741376 32741490 -12166080 + MSTD LTR MaLR 1 128 -268 602 212 53 0 chr21 32741557 32741689 -12165881 + MSTD LTR MaLR 234 372 -24 1165 216 70 33 chr21 32742546 32742875 -12164695 + MER2 DNA MER2_type 2 342 -2 450 161 21 177 chr21 32743225 32743417 -12164153 - L1ME1 LINE L1 -5 6161 6000 216 97 0 0 chr21 32743493 32743524 -12164046 + (TC)n Simple_repeat Simple_repeat 2 32 0 561 94 0 0 chr21 32743666 32743751 -12163819 + (TCCA)n Simple_repeat Simple_repeat 1 85 0 257 304 74 34 chr21 32749055 32749203 -12158367 + MIR SINE MIR 20 173 -89 2313 88 3 3 chr21 32749452 32749759 -12157811 - AluSc SINE Alu -2 307 1 241 278 0 14 chr21 32750833 32750905 -12156665 - MIR SINE MIR -17 245 175 2091 103 20 0 chr21 32753847 32754139 -12153431 - AluSx SINE Alu -14 298 1 1050 31 78 0 chr21 32757750 32757879 -12149691 + MER85 DNA T2_type 1 139 0 223 188 0 21 chr21 32757911 32757959 -12149611 + A-rich Low_complexity Low_complexity 2 48 0 2913 50 3 17 chr21 32759811 32760171 -12147399 + THE1A LTR MaLR 1 355 0 2153 59 15 0 chr21 32760679 32760951 -12146619 - AluSq SINE Alu -3 310 35 204 313 91 0 chr21 32761140 32761239 -12146331 + MIR SINE MIR 126 233 -29 2568 140 83 24 chr21 32761967 32762425 -12145145 - MER31A LTR ERV1 0 485 1 358 283 83 17 chr21 32762646 32762766 -12144804 - L3 LINE CR1 -214 1363 1236 2498 40 0 0 chr21 32763026 32763322 -12144248 - AluY SINE Alu -15 296 1 332 223 203 56 chr21 32763322 32763519 -12144051 - L1MC4a LINE L1 -1681 6127 5902 1098 228 102 48 chr21 32763585 32764239 -12143331 - L2 LINE L2 -3 3310 2623 207 167 0 0 chr21 32765961 32766003 -12141567 + A-rich Low_complexity Low_complexity 1 42 0 319 282 99 55 chr21 32767453 32767634 -12139936 + Charlie8 DNA MER1_type 88 276 -2141 190 347 14 0 chr21 32767714 32767786 -12139784 - L2 LINE L2 0 3272 3200 189 0 0 0 chr21 32767889 32767910 -12139660 + (TG)n Simple_repeat Simple_repeat 2 22 0 710 268 180 3 chr21 32768594 32768878 -12138692 - LTR16A LTR ERVL -26 424 91 435 271 64 43 chr21 32769202 32769483 -12138087 + L1ME4a LINE L1 5619 5905 -216 2362 92 0 0 chr21 32770767 32771061 -12136509 + AluSg SINE Alu 1 294 -16 2410 91 0 0 chr21 32771715 32772022 -12135548 + AluY SINE Alu 1 307 -4 2021 238 105 13 chr21 32772229 32772762 -12134808 + MLT1G1 LTR MaLR 14 595 0 713 228 29 0 chr21 32772948 32773119 -12134451 + MIR SINE MIR 4 179 -83 1998 190 125 7 chr21 32773223 32773670 -12133900 + MLT1D LTR MaLR 6 505 0 195 222 153 0 chr21 32774039 32774111 -12133459 + MIR SINE MIR 102 184 -78 191 280 120 0 chr21 32774123 32774198 -12133372 + MER5A DNA MER1_type 3 86 -103 236 164 273 0 chr21 32774201 32774256 -12133314 + MLT1E3 LTR MaLR 1 70 -584 1187 189 257 25 chr21 32774317 32774671 -12132899 + MLT1E3 LTR MaLR 189 624 0 302 183 2 2 chr21 32774689 32774753 -12132817 - FLAM_A SINE Alu -1 132 78 293 313 25 44 chr21 32775674 32775887 -12131683 - MER20 DNA MER1_type -4 215 7 653 188 23 38 chr21 32777529 32777595 -12129975 + MLT1A2 LTR MaLR 1 66 -308 1933 172 44 26 chr21 32777595 32777984 -12129586 + MSTD LTR MaLR 1 396 0 653 188 23 38 chr21 32777984 32778050 -12129520 + MLT1A2 LTR MaLR 66 131 -243 859 220 0 6 chr21 32778057 32778225 -12129345 + MLT1A2 LTR MaLR 208 374 0 21 0 0 0 chr21 32778553 32778574 -12128996 + AT_rich Low_complexity Low_complexity 1 21 0 239 0 32 0 chr21 32779858 32779889 -12127681 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 2090 167 23 10 chr21 32780379 32780763 -12126807 + MLT1B LTR MaLR 1 389 -1 329 307 175 0 chr21 32782286 32782423 -12125147 + MER5A DNA MER1_type 29 189 0 26 30 0 0 chr21 32783395 32783428 -12124142 + AT_rich Low_complexity Low_complexity 1 33 0 2413 115 19 19 chr21 32784755 32785119 -12122451 - THE1B LTR MaLR 0 364 1 721 223 173 16 chr21 32785168 32785486 -12122084 + L1MC5 LINE L1 7414 7781 -180 866 193 12 6 chr21 32785493 32785654 -12121916 + AluJb SINE Alu 141 302 -10 28 0 0 0 chr21 32785654 32785682 -12121888 + AT_rich Low_complexity Low_complexity 1 28 0 315 188 12 62 chr21 32785713 32785793 -12121777 + L1MC5 LINE L1 7825 7900 -61 2373 82 0 20 chr21 32785843 32786187 -12121383 + AluY SINE Alu 1 311 0 2003 139 0 7 chr21 32786204 32786523 -12121047 + AluJb SINE Alu 1 317 0 2397 88 3 0 chr21 32786994 32787291 -12120279 + AluSx SINE Alu 1 298 -14 268 298 77 0 chr21 32787889 32787993 -12119577 - MIR SINE MIR -34 228 117 273 315 11 0 chr21 32788778 32788867 -12118703 + MIR SINE MIR 33 122 -86 264 325 52 52 chr21 32789753 32789907 -12117663 - MIR SINE MIR -53 209 56 2053 122 26 34 chr21 32790950 32791328 -12116242 + THE1C LTR MaLR 1 375 0 469 278 91 34 chr21 32792711 32792887 -12114683 + MIR SINE MIR 28 213 -49 1891 109 73 54 chr21 32793647 32793689 -12113881 - THE1C LTR MaLR 0 375 335 2018 121 3 29 chr21 32793689 32793833 -12113737 + AluSx SINE Alu 1 147 -165 225 0 0 0 chr21 32793833 32793858 -12113712 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 234 0 0 0 chr21 32793857 32793883 -12113687 + (GA)n Simple_repeat Simple_repeat 2 27 0 2018 121 3 29 chr21 32793858 32794045 -12113525 + AluSx SINE Alu 147 299 -13 1891 109 73 54 chr21 32794045 32794370 -12113200 - THE1C LTR MaLR -40 335 1 22 35 0 0 chr21 32794784 32794813 -12112757 + AT_rich Low_complexity Low_complexity 1 29 0 559 253 98 9 chr21 32794900 32794980 -12112590 + MER5C DNA MER1_type 79 150 -174 1379 172 54 50 chr21 32794980 32795277 -12112293 + AluJb SINE Alu 1 298 -14 559 253 98 9 chr21 32795277 32795421 -12112149 + MER5C DNA MER1_type 150 323 -1 238 314 70 26 chr21 32796149 32796305 -12111265 + L3 LINE CR1 1390 1552 -25 627 254 23 17 chr21 32796390 32796567 -12111003 - MER115 DNA AcHobo -40 653 476 2390 166 29 2 chr21 32796695 32797110 -12110460 - MSTB LTR MaLR 0 426 1 1389 87 0 11 chr21 32797276 32797460 -12110110 + AluY SINE Alu 1 182 -129 904 91 0 0 chr21 32797520 32797641 -12109929 + AluSg/x SINE Alu 184 304 -6 2464 99 11 8 chr21 32798872 32799226 -12108344 - THE1A LTR MaLR 0 355 1 307 236 109 9 chr21 32799761 32799871 -12107699 - MIR SINE MIR -18 244 124 24 0 0 0 chr21 32800921 32800945 -12106625 + AT_rich Low_complexity Low_complexity 1 24 0 2398 84 3 0 chr21 32801074 32801370 -12106200 + AluSp SINE Alu 1 297 -16 21 36 0 0 chr21 32801530 32801558 -12106012 + AT_rich Low_complexity Low_complexity 1 28 0 1850 148 32 0 chr21 32801629 32801907 -12105663 - AluJb SINE Alu -22 290 4 180 167 56 0 chr21 32802425 32802461 -12105109 + MIR SINE MIR 110 147 -61 207 278 19 0 chr21 32802657 32802711 -12104859 + MIR3 SINE MIR 151 205 -3 2072 124 162 11 chr21 32802728 32803099 -12104471 - MSTA LTR MaLR 0 428 2 962 293 99 24 chr21 32803986 32804574 -12102996 + HAL1 LINE L1 1175 1806 -701 180 176 0 0 chr21 32805385 32805419 -12102151 + CT-rich Low_complexity Low_complexity 3 36 0 946 185 0 0 chr21 32805597 32805748 -12101822 - AluJb SINE Alu -24 288 138 246 186 229 0 chr21 32805918 32805988 -12101582 - MIR SINE MIR -71 191 106 185 154 58 58 chr21 32806197 32806249 -12101321 + MIR3 SINE MIR 156 207 -1 272 268 0 0 chr21 32806929 32807000 -12100570 - L2 LINE L2 0 3272 3202 194 319 122 60 chr21 32807115 32807378 -12100192 - L2 LINE L2 -344 2970 2725 1997 140 0 3 chr21 32807378 32807686 -12099884 + AluJb SINE Alu 1 307 0 194 319 122 60 chr21 32807686 32808101 -12099469 - L2 LINE L2 -589 2725 2249 182 258 34 45 chr21 32808934 32809023 -12098547 + MIR SINE MIR 49 136 -72 201 104 62 21 chr21 32809026 32809074 -12098496 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 1785 135 0 29 chr21 32809175 32809456 -12098114 + AluJb SINE Alu 1 273 -39 329 266 7 15 chr21 32809495 32809595 -12097975 - MER5B DNA MER1_type -76 113 1 234 222 0 0 chr21 32809595 32809647 -12097923 + MIR3 SINE MIR 153 204 -4 198 233 52 86 chr21 32809925 32810041 -12097529 + MIR SINE MIR 69 180 -82 203 208 0 21 chr21 32811567 32811615 -12095955 + GA-rich Low_complexity Low_complexity 2 48 0 665 306 114 36 chr21 32812225 32813000 -12094570 - L2 LINE L2 0 3313 2473 2015 134 2 113 chr21 32813136 32813241 -12094329 + MLT1B LTR MaLR 3 118 -272 1862 103 16 0 chr21 32813241 32813494 -12094076 - AluSq SINE Alu -11 302 46 2015 134 2 113 chr21 32813494 32813822 -12093748 + MLT1B LTR MaLR 118 388 -2 231 36 0 0 chr21 32813953 32813981 -12093589 + (CA)n Simple_repeat Simple_repeat 1 28 0 3106 266 87 26 chr21 32815409 32815524 -12092046 + L1ME3A LINE L1 2032 2139 -4076 2617 59 0 0 chr21 32815524 32815827 -12091743 + AluY SINE Alu 1 303 -8 3106 266 87 26 chr21 32815827 32816733 -12090837 + L1ME3A LINE L1 2139 2988 -3227 2261 124 0 3 chr21 32816733 32817047 -12090523 + AluSq SINE Alu 1 313 0 3106 266 87 26 chr21 32817047 32817658 -12089912 + L1ME3A LINE L1 2988 3868 -2347 247 259 218 0 chr21 32817648 32817795 -12089775 + L1ME3A LINE L1 5714 5892 -347 * 1893 190 40 40 chr21 32817807 32818212 -12089358 + MLT2D LTR ERVL 1 405 -9 1120 182 68 59 chr21 32818224 32818531 -12089039 + L1ME3A LINE L1 5924 6233 -6 3862 148 51 12 chr21 32818550 32819241 -12088329 + L1MB2 LINE L1 5447 6164 -7 1749 173 132 73 chr21 32819570 32820061 -12087509 + MLT2B1 LTR ERVL 1 520 0 392 284 234 24 chr21 32820091 32820471 -12087099 + L2 LINE L2 2854 3313 0 643 281 171 25 chr21 32821198 32821561 -12086009 - L2 LINE L2 -12 3301 2886 303 243 78 19 chr21 32821967 32822070 -12085500 + L1MA9 LINE L1 6199 6307 -5 246 159 0 0 chr21 32823306 32823350 -12084220 - MER116 DNA Mariner -36 44 1 285 215 50 28 chr21 32824179 32824288 -12083282 + L1M LINE L1 5299 5410 -744 2101 121 0 0 chr21 32824333 32824639 -12082931 + AluSc SINE Alu 1 306 -3 212 246 31 15 chr21 32824854 32824919 -12082651 + MIR SINE MIR 106 171 -91 880 256 8 34 chr21 32824960 32825194 -12082376 + MIR SINE MIR 2 229 -33 263 326 31 0 chr21 32826131 32826229 -12081341 - MIR SINE MIR -47 215 115 283 263 35 53 chr21 32827034 32827148 -12080422 + MIR3 SINE MIR 8 119 -89 390 223 170 0 chr21 32827214 32827326 -12080244 - MER3 DNA MER1_type 0 209 79 * 788 233 6 0 chr21 32827324 32827483 -12080087 - MER3 DNA MER1_type -82 127 15 311 273 88 48 chr21 32827802 32828211 -12079359 + L1M4 LINE L1 4194 4616 -1530 333 300 174 32 chr21 32828501 32828811 -12078759 + L1M4 LINE L1 4880 5233 -913 1002 289 59 34 chr21 32828827 32829380 -12078190 + L1M4 LINE L1 5254 5824 -360 1144 105 12 0 chr21 32829384 32829546 -12078024 + AluSg/x SINE Alu 131 294 -18 261 282 0 39 chr21 32830537 32830615 -12076955 + G-rich Low_complexity Low_complexity 2 76 0 363 250 0 5 chr21 32831193 32831284 -12076286 - L2 LINE L2 -13 3300 3172 939 251 5 9 chr21 32831294 32831509 -12076061 - MIR SINE MIR -3 259 46 2539 56 0 0 chr21 32831599 32831903 -12075667 + AluY SINE Alu 1 304 -7 182 328 69 38 chr21 32833521 32833652 -12073918 + MIR3 SINE MIR 14 148 -60 374 212 110 25 chr21 32833760 32833878 -12073692 + MIR SINE MIR 122 249 -13 332 231 128 0 chr21 32833944 32834022 -12073548 + MER94 DNA DNA 12 99 -35 2039 106 20 3 chr21 32834201 32834494 -12073076 - AluSq SINE Alu -15 298 1 208 234 43 0 chr21 32834764 32834811 -12072759 + L2 LINE L2 3151 3199 -73 183 80 0 0 chr21 32834933 32834958 -12072612 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 3289 81 22 31 chr21 32835083 32835540 -12072030 + MLT2A2 LTR ERVL 1 453 0 2280 93 0 0 chr21 32835702 32836003 -12071567 + AluSg SINE Alu 1 301 -9 605 259 65 24 chr21 32836005 32836175 -12071395 + MIR SINE MIR 15 191 -71 2123 106 149 0 chr21 32836182 32836511 -12071059 + MER83B LTR ERV1 1 378 0 1420 197 65 57 chr21 32836627 32837012 -12070558 + MLT1B LTR MaLR 1 388 -2 1734 118 82 4 chr21 32837460 32837730 -12069840 - AluSg SINE Alu -19 291 1 988 215 33 45 chr21 32837826 32837845 -12069725 + MLT1F LTR MaLR 1 19 -523 3429 121 62 4 chr21 32837845 32838343 -12069227 + MER1A DNA MER1_type 1 527 0 988 215 33 45 chr21 32838343 32838805 -12068765 + MLT1F LTR MaLR 19 542 0 345 309 36 0 chr21 32838868 32838978 -12068592 - MIR SINE MIR -100 162 49 617 184 133 6 chr21 32840678 32840836 -12066734 - MER5B DNA MER1_type 0 178 1 346 242 42 0 chr21 32842137 32842257 -12065313 + L2 LINE L2 2545 2669 -645 191 332 154 10 chr21 32842289 32842557 -12065013 + L2 LINE L2 2761 3073 -240 294 228 21 103 chr21 32842568 32842713 -12064857 + LTR33 LTR ERVL 12 144 -377 587 247 108 43 chr21 32842951 32843182 -12064388 + L2 LINE L2 3050 3295 -18 796 258 54 48 chr21 32843211 32843506 -12064064 + L2 LINE L2 3013 3309 -4 22 0 0 0 chr21 32844718 32844740 -12062830 + GC_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr21 32844993 32845046 -12062524 + GC_rich Low_complexity Low_complexity 1 53 0 201 267 209 23 chr21 32846007 32846093 -12061477 + MIR SINE MIR 47 148 -114 231 67 0 0 chr21 32846393 32846423 -12061147 + L1MB7 LINE L1 5504 5533 -641 407 182 114 0 chr21 32846423 32846511 -12061059 + MER4A LTR ERV1 1 98 -566 357 171 19 5 chr21 32846511 32846641 -12060929 + MER4A LTR ERV1 261 441 -223 1523 145 9 0 chr21 32846672 32846900 -12060670 + MER4B LTR ERV1 381 610 0 3684 140 23 20 chr21 32846900 32847037 -12060533 + L1MB7 LINE L1 5530 5665 -519 2100 111 3 3 chr21 32847037 32847344 -12060226 + AluSp SINE Alu 1 307 -6 3684 140 23 20 chr21 32847344 32847858 -12059712 + L1MB7 LINE L1 5665 6183 -1 2116 113 0 0 chr21 32848586 32848896 -12058674 + AluSx SINE Alu 1 310 -2 182 297 16 16 chr21 32850339 32850403 -12057167 - L3 LINE CR1 -158 1419 1356 309 246 101 36 chr21 32850425 32850563 -12057007 + MIR SINE MIR 24 170 -92 1368 138 64 9 chr21 32850978 32851196 -12056374 + MER30 DNA MER1_type 1 230 0 2258 136 3 51 chr21 32851484 32851859 -12055711 + THE1B LTR MaLR 8 364 0 2037 254 110 118 chr21 32851861 32852632 -12054938 - L2 LINE L2 -33 3280 2504 638 184 170 0 chr21 32852632 32852779 -12054791 - MLT1D LTR MaLR -1 504 333 2083 112 0 16 chr21 32852783 32853086 -12054484 - AluSx SINE Alu -14 298 1 2037 254 110 118 chr21 32853086 32854200 -12053370 - L2 LINE L2 -812 2501 1264 264 272 26 9 chr21 32854249 32854363 -12053207 + (TA)n Simple_repeat Simple_repeat 2 117 0 330 272 88 9 chr21 32854679 32854793 -12052777 + L2 LINE L2 3191 3313 0 1743 212 49 7 chr21 32855001 32855430 -12052140 - Charlie7 DNA MER1_type -455 2157 1711 264 342 60 13 chr21 32855409 32855558 -12052012 - Charlie7 DNA MER1_type -2029 583 428 * 260 139 0 0 chr21 32855558 32855594 -12051976 - L1PA5 LINE L1 -17 6137 6102 22 0 0 0 chr21 32855600 32855622 -12051948 + AT_rich Low_complexity Low_complexity 1 22 0 653 280 65 28 chr21 32855670 32856024 -12051546 - Charlie7 DNA MER1_type -2193 419 53 337 298 140 9 chr21 32856773 32856887 -12050683 + L2 LINE L2 3137 3265 -7 808 181 0 25 chr21 32856921 32857081 -12050489 - FRAM SINE Alu -20 156 1 222 128 0 0 chr21 32857137 32857176 -12050394 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1339 158 18 61 chr21 32857553 32857754 -12049816 - AluSx SINE Alu 0 322 114 240 35 0 0 chr21 32857754 32857783 -12049787 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1805 137 4 0 chr21 32857783 32858061 -12049509 - AluSc SINE Alu -30 279 1 1339 158 18 61 chr21 32858061 32858175 -12049395 - AluSx SINE Alu -206 116 18 238 226 65 0 chr21 32858212 32858274 -12049296 - L1MA9 LINE L1 -9 6303 6238 396 327 81 20 chr21 32858376 32858624 -12048946 - HAL1 LINE L1 -1401 1106 844 1159 105 0 0 chr21 32858792 32858945 -12048625 - THE1B LTR MaLR -21 343 191 244 252 14 21 chr21 32859038 32859181 -12048389 + (TATG)n Simple_repeat Simple_repeat 1 142 0 1677 126 28 16 chr21 32859198 32859445 -12048125 - THE1B LTR MaLR -114 250 1 3409 184 46 15 chr21 32859824 32860547 -12047023 + L1MC2 LINE L1 5600 6344 0 208 370 40 0 chr21 32861163 32861263 -12046307 - L2 LINE L2 -6 3307 3204 714 265 71 25 chr21 32861691 32861929 -12045641 - MLT1C LTR MaLR -3 464 216 201 169 119 17 chr21 32862286 32862345 -12045225 - MER5A DNA MER1_type -118 71 7 180 217 0 65 chr21 32862535 32862581 -12044989 + L3 LINE CR1 1392 1434 -143 206 237 79 26 chr21 32862791 32862867 -12044703 + L2 LINE L2 3077 3156 -157 1683 190 41 104 chr21 32862906 32863201 -12044369 - MLT1D LTR MaLR 0 505 254 2234 93 0 0 chr21 32863201 32863503 -12044067 - AluSx SINE Alu -10 302 1 1683 190 41 104 chr21 32863503 32863718 -12043852 - MLT1D LTR MaLR -251 254 27 2256 204 88 124 chr21 32863732 32863808 -12043762 - MER21A LTR ERV1 -7 924 847 1897 122 18 18 chr21 32863808 32864094 -12043476 + AluSx SINE Alu 6 291 -21 2256 204 88 124 chr21 32864094 32864699 -12042871 - MER21A LTR ERV1 -84 847 286 1998 106 0 0 chr21 32864699 32864972 -12042598 + AluSc SINE Alu 1 273 -36 2256 204 88 124 chr21 32864972 32865248 -12042322 - MER21A LTR ERV1 -645 286 1 591 260 176 20 chr21 32865413 32865709 -12041861 - LTR16C LTR ERVL -1 490 149 364 136 0 30 chr21 32865896 32865948 -12041622 - MADE1 DNA Mariner -4 76 25 1827 114 92 4 chr21 32865948 32866229 -12041341 - AluSx SINE Alu -6 306 1 364 136 0 30 chr21 32866229 32866242 -12041328 - MADE1 DNA Mariner -55 25 13 258 156 0 0 chr21 32866266 32866311 -12041259 + MADE1 DNA Mariner 36 80 0 375 185 12 37 chr21 32866313 32866394 -12041176 - MER81 DNA DNA -34 80 2 195 284 45 15 chr21 32866892 32866959 -12040611 + L2 LINE L2 2872 2940 -332 1277 213 54 54 chr21 32867112 32867502 -12040068 - MLT1B LTR MaLR 0 390 1 291 252 184 10 chr21 32867502 32867605 -12039965 + L2 LINE L2 3151 3271 -1 269 318 35 0 chr21 32867719 32867804 -12039766 + LTR67 LTR ERVL 100 187 -370 371 308 43 5 chr21 32868035 32868220 -12039350 + LTR67 LTR ERVL 366 557 0 200 318 131 0 chr21 32868226 32868333 -12039237 - MIR SINE MIR -109 153 33 755 142 47 24 chr21 32868455 32868582 -12038988 + AluJ SINE Alu 2 131 -181 743 138 41 41 chr21 32868586 32868731 -12038839 + L1M1 LINE L1 13 157 -7408 965 191 0 0 chr21 32868731 32868904 -12038666 + AluJ SINE Alu 120 292 -20 350 163 28 17 chr21 32869879 32869955 -12037615 + MLT1C LTR MaLR 299 417 -50 3193 190 22 8 chr21 32869956 32870577 -12036993 - L1MB4 LINE L1 -6 6174 5545 454 203 175 34 chr21 32870594 32870771 -12036799 - MLT1K LTR MaLR -54 534 333 286 248 33 66 chr21 32871262 32871383 -12036187 + LTR4 LTR ERV1 1 117 -479 670 236 14 32 chr21 32871655 32871871 -12035699 + LTR4 LTR ERV1 385 596 0 620 175 83 0 chr21 32873085 32873205 -12034365 - FLAM_A SINE Alu -3 130 1 966 265 39 33 chr21 32873685 32874017 -12033553 - L1MC4a LINE L1 -1906 5902 5569 2816 3 0 0 chr21 32874202 32874513 -12033057 - AluYa5 SINE Alu 0 311 1 2144 119 0 0 chr21 32875558 32875860 -12031710 + AluSc SINE Alu 1 302 -7 1991 131 6 6 chr21 32875936 32876248 -12031322 - AluSx SINE Alu 0 312 1 382 141 42 14 chr21 32876549 32876620 -12030950 - MER20 DNA MER1_type -114 105 33 1677 158 7 26 chr21 32877018 32877321 -12030249 + AluJo SINE Alu 1 297 -15 548 304 64 48 chr21 32877354 32877792 -12029778 + L2 LINE L2 2825 3269 -3 615 244 118 36 chr21 32877854 32878075 -12029495 + MIR SINE MIR 10 248 -14 327 350 119 0 chr21 32879090 32879250 -12028320 + MIR SINE MIR 40 218 -44 521 249 161 15 chr21 32879946 32880207 -12027363 - L1ME1 LINE L1 -237 5929 5728 1643 209 82 5 chr21 32880312 32880761 -12026809 - Charlie4a DNA MER1_type -1 507 24 264 355 43 43 chr21 32881816 32882002 -12025568 + MER5A DNA MER1_type 4 189 0 190 323 71 47 chr21 32882068 32882195 -12025375 - MIR SINE MIR -56 206 77 1536 181 14 0 chr21 32882251 32882538 -12025032 - AluJo SINE Alu -13 299 9 752 288 131 22 chr21 32883507 32884133 -12023437 - L2 LINE L2 0 3313 2565 1809 127 11 7 chr21 32884224 32884499 -12023071 + AluSq SINE Alu 1 276 -37 2316 102 0 0 chr21 32885384 32885688 -12021882 - AluSx SINE Alu -6 306 3 221 219 0 16 chr21 32885952 32886016 -12021554 + CT-rich Low_complexity Low_complexity 2 64 0 210 339 64 18 chr21 32886963 32887072 -12020498 + L2 LINE L2 3159 3272 0 734 103 29 0 chr21 32887072 32887208 -12020362 + (TGGA)n Simple_repeat Simple_repeat 2 141 0 328 249 4 4 chr21 32887841 32887928 -12019642 - MIR SINE MIR -102 106 20 998 184 47 5 chr21 32888132 32888322 -12019248 - MER20 DNA MER1_type -20 199 2 481 245 7 43 chr21 32888997 32889136 -12018434 + MER94 DNA DNA 1 134 0 16881 169 26 13 chr21 32889292 32892567 -12015003 + L1MA4A LINE L1 1 3319 -3529 6412 118 28 12 chr21 32892570 32893749 -12013821 + L1MA4A LINE L1 5799 7001 -4 2299 63 0 0 chr21 32894674 32894961 -12012609 + AluY SINE Alu 12 298 -13 1114 250 134 57 chr21 32895080 32895313 -12012257 - L2 LINE L2 0 3313 3099 1760 113 0 12 chr21 32895313 32895570 -12012000 + AluSc SINE Alu 1 254 -55 1114 250 134 57 chr21 32895570 32896027 -12011543 - L2 LINE L2 -214 3099 2679 276 53 0 0 chr21 32896027 32896065 -12011505 + (TG)n Simple_repeat Simple_repeat 2 39 0 714 157 16 16 chr21 32896067 32896188 -12011382 - FLAM_A SINE Alu -12 121 1 1114 250 134 57 chr21 32896188 32896285 -12011285 - L2 LINE L2 -634 2679 2435 205 191 0 0 chr21 32896347 32896389 -12011181 + T-rich Low_complexity Low_complexity 1 42 0 203 314 0 0 chr21 32896402 32896453 -12011117 + L2 LINE L2 3174 3224 -48 21 36 0 0 chr21 32896620 32896648 -12010922 + AT_rich Low_complexity Low_complexity 1 28 0 669 202 116 110 chr21 32897356 32897692 -12009878 + MER46C DNA MER2_type 1 338 0 237 132 0 0 chr21 32901185 32901223 -12006347 + (A)n Simple_repeat Simple_repeat 1 38 0 463 314 42 75 chr21 32902164 32902608 -12004962 + L2 LINE L2 2618 3039 -233 985 262 23 19 chr21 32902751 32903007 -12004563 + MIR SINE MIR 6 262 0 1854 145 3 7 chr21 32903350 32903654 -12003916 - AluSx SINE Alu -9 303 1 252 156 65 26 chr21 32903749 32903826 -12003744 + A-rich Low_complexity Low_complexity 2 81 0 1255 195 116 22 chr21 32904188 32904455 -12003115 - AluJo SINE Alu -10 292 1 502 345 0 0 chr21 32906386 32906525 -12001045 - L2 LINE L2 0 3272 3134 323 331 23 23 chr21 32906543 32906673 -12000897 + L2 LINE L2 3134 3263 -9 460 312 177 36 chr21 32907479 32907835 -11999735 - MLT1L LTR MaLR -8 607 202 1596 199 31 3 chr21 32907890 32908211 -11999359 + MER58B DNA MER1_type 1 330 -11 2063 67 33 37 chr21 32908213 32908513 -11999057 + AluY SINE Alu 1 299 -12 2041 181 23 109 chr21 32909024 32909149 -11998421 - MLT1F1 LTR MaLR -8 559 425 2280 142 31 0 chr21 32909149 32909509 -11998061 - THE1C LTR MaLR -4 371 1 10649 101 29 40 chr21 32909509 32911105 -11996465 - THE1C-int LTR MaLR 0 1580 1 2220 153 27 5 chr21 32911105 32911472 -11996098 - THE1C LTR MaLR 0 375 1 2041 181 23 109 chr21 32911472 32911956 -11995614 - MLT1F1 LTR MaLR -139 428 1 667 272 41 12 chr21 32911961 32912207 -11995363 - L1MC4a LINE L1 -1876 5932 5680 703 251 71 32 chr21 32912226 32912509 -11995061 - L1MC4a LINE L1 -2163 5645 5352 2568 48 0 0 chr21 32912865 32913174 -11994396 - AluY SINE Alu -2 309 1 1942 128 78 31 chr21 32913594 32913952 -11993618 + THE1C LTR MaLR 1 375 0 481 250 64 36 chr21 32914207 32914347 -11993223 - L2 LINE L2 -9 3304 3161 912 62 86 0 chr21 32915984 32916112 -11991458 - MER85 DNA T2_type 0 139 1 2103 114 3 0 chr21 32916185 32916483 -11991087 + AluSg SINE Alu 1 299 -11 1269 232 45 130 chr21 32916538 32917145 -11990425 + MLT1H1 LTR MaLR 1 555 0 180 0 0 0 chr21 32920925 32920945 -11986625 + (A)n Simple_repeat Simple_repeat 1 20 0 477 283 0 9 chr21 32923272 32923385 -11984185 - MER81 DNA DNA 0 114 3 617 178 199 0 chr21 32923862 32924008 -11983562 + MSTA LTR MaLR 1 175 -253 2193 75 23 39 chr21 32924008 32924342 -11983228 - AluY SINE Alu 0 329 1 1369 142 0 54 chr21 32924351 32924590 -11982980 - AluJb SINE Alu -1 311 86 1498 97 92 8 chr21 32924590 32924828 -11982742 + MSTA LTR MaLR 171 428 0 2029 234 24 24 chr21 32925054 32925559 -11982011 - MLT1D LTR MaLR 0 505 1 213 39 0 0 chr21 32926464 32926490 -11981080 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 824 201 154 19 chr21 32926560 32926774 -11980796 + MIR SINE MIR 19 261 -1 195 129 0 0 chr21 32927470 32927501 -11980069 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 580 181 57 9 chr21 32927691 32927796 -11979774 + MER81 DNA DNA 1 110 -4 677 125 34 23 chr21 32928420 32928596 -11978974 + GA-rich Low_complexity Low_complexity 3 180 0 598 278 59 6 chr21 32928660 32928829 -11978741 - MIR SINE MIR -32 230 53 485 302 23 23 chr21 32929134 32929306 -11978264 + MIR SINE MIR 89 260 -2 1722 159 0 44 chr21 32929306 32929628 -11977942 - AluJb SINE Alu 0 309 1 2261 184 37 96 chr21 32929764 32930273 -11977297 - LTR9 LTR ERV1 -33 579 111 2271 41 0 0 chr21 32930273 32930539 -11977031 + AluY SINE Alu 45 310 -1 2261 184 37 96 chr21 32930539 32930644 -11976926 - LTR9 LTR ERV1 -501 111 1 2558 7 0 0 chr21 32931126 32931398 -11976172 + AluYb8 SINE Alu 43 314 -4 198 71 0 0 chr21 32931516 32931544 -11976026 + (ATG)n Simple_repeat Simple_repeat 3 30 0 418 244 50 89 chr21 32931587 32931767 -11975803 - MIR SINE MIR -82 180 8 381 213 37 56 chr21 32935934 32936042 -11971528 + MER5A DNA MER1_type 7 112 -77 1068 265 89 23 chr21 32936077 32936100 -11971470 - L1ME3 LINE L1 -1 6161 6141 2705 126 21 21 chr21 32936100 32936528 -11971042 - MSTA LTR MaLR 0 428 1 1068 265 89 23 chr21 32936528 32936941 -11970629 - L1ME3 LINE L1 -21 6141 5696 297 0 0 0 chr21 32937500 32937533 -11970037 + (CA)n Simple_repeat Simple_repeat 1 33 0 203 343 90 18 chr21 32938431 32938597 -11968973 - MIR3 SINE MIR -7 201 24 1830 162 0 17 chr21 32940053 32940349 -11967221 + AluJo SINE Alu 1 291 -21 29 0 0 0 chr21 32940354 32940383 -11967187 + AT_rich Low_complexity Low_complexity 1 29 0 182 346 0 0 chr21 32940529 32940581 -11966989 - MER5A DNA MER1_type -2 187 136 2283 116 0 0 chr21 32940594 32940905 -11966665 + AluY SINE Alu 1 311 0 1891 124 49 0 chr21 32941312 32941579 -11965991 + AluSx SINE Alu 1 280 -32 462 36 0 0 chr21 32941579 32941635 -11965935 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 618 71 0 0 chr21 32942910 32942994 -11964576 + (CCCTAA)n Simple_repeat Simple_repeat 1 84 0 306 290 129 108 chr21 32943728 32944458 -11963112 + HAL1b LINE L1 165 909 -439 2353 95 10 0 chr21 32944468 32944773 -11962797 + AluSx SINE Alu 1 308 -4 1326 198 22 88 chr21 32945272 32945682 -11961888 + MLT1B LTR MaLR 8 390 0 206 278 0 19 chr21 32945810 32945864 -11961706 + L2 LINE L2 3203 3255 -58 261 0 0 0 chr21 32946894 32946923 -11960647 + (TC)n Simple_repeat Simple_repeat 2 30 0 342 0 0 0 chr21 32946925 32946963 -11960607 + (CA)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr21 32948301 32948329 -11959241 + AT_rich Low_complexity Low_complexity 1 28 0 2037 137 0 0 chr21 32948416 32948694 -11958876 + AluSx SINE Alu 6 283 -29 450 0 0 0 chr21 32948694 32948744 -11958826 + (AAATG)n Simple_repeat Simple_repeat 1 50 0 537 16 0 0 chr21 32948745 32948807 -11958763 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 2132 110 24 0 chr21 32949350 32949642 -11957928 - AluSx SINE Alu -13 299 1 250 294 8 17 chr21 32949867 32949986 -11957584 + (CA)n Simple_repeat Simple_repeat 2 119 0 1781 133 0 100 chr21 32950141 32950480 -11957090 - AluJb SINE Alu -6 306 2 21 0 0 0 chr21 32950484 32950505 -11957065 + AT_rich Low_complexity Low_complexity 1 21 0 758 203 0 15 chr21 32951697 32951830 -11955740 + AluJo/FLAM SINE Alu 2 132 -170 1372 191 0 4 chr21 32951832 32952067 -11955503 + AluJo SINE Alu 1 234 -78 1905 130 7 18 chr21 32952068 32952352 -11955218 - AluSx SINE Alu -31 281 1 226 188 42 0 chr21 32952376 32952424 -11955146 + MIR SINE MIR 102 151 -111 227 303 0 26 chr21 32954329 32954405 -11953165 + G-rich Low_complexity Low_complexity 5 78 0 2338 93 3 31 chr21 32955705 32956026 -11951544 - AluSq SINE Alu 0 313 2 511 301 48 0 chr21 32956034 32956200 -11951370 + MER5B DNA MER1_type 5 178 0 1612 218 51 21 chr21 32956395 32956827 -11950743 + MLT1C LTR MaLR 19 463 -4 486 282 41 35 chr21 32957082 32957252 -11950318 + MIR3 SINE MIR 24 194 -14 2509 198 32 84 chr21 32957779 32958455 -11949115 - MLT1E1 LTR MaLR -1 653 13 2215 138 3 0 chr21 32959322 32959633 -11947937 - AluSx SINE Alu 0 312 1 186 350 10 52 chr21 32959807 32959904 -11947666 + MIR3 SINE MIR 111 203 -5 30 0 0 0 chr21 32960108 32960138 -11947432 + AT_rich Low_complexity Low_complexity 1 30 0 271 340 87 25 chr21 32960413 32960654 -11946916 + L3b LINE CR1 1294 1549 -34 295 348 59 0 chr21 32961839 32961957 -11945613 + MIR SINE MIR 82 206 -56 497 138 0 0 chr21 32962666 32962746 -11944824 - MADE1 DNA Mariner 0 80 1 310 340 107 0 chr21 32963887 32964037 -11943533 - MIR3 SINE MIR -11 197 32 829 201 95 0 chr21 32964061 32964230 -11943340 + MER5A DNA MER1_type 5 189 0 475 282 64 50 chr21 32965440 32965642 -11941928 - MIR SINE MIR 0 262 58 1136 170 74 4 chr21 32966683 32966913 -11940657 - L1MB5 LINE L1 -8 6166 5921 1504 270 53 15 chr21 32967114 32967584 -11939986 - L1MC4a LINE L1 -1863 5945 5458 320 282 156 45 chr21 32968921 32969133 -11938437 + MIR SINE MIR 5 243 -19 1090 267 62 20 chr21 32969166 32969556 -11938014 + LTR16B LTR ERVL 59 464 0 23 0 0 0 chr21 32969657 32969680 -11937890 + AT_rich Low_complexity Low_complexity 1 23 0 279 296 17 35 chr21 32970131 32970246 -11937324 - MIR3 SINE MIR -2 206 94 761 164 0 6 chr21 32970294 32970459 -11937111 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 681 222 0 0 chr21 32970481 32970657 -11936913 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 735 142 8 37 chr21 32971990 32972124 -11935446 + FRAM SINE Alu 46 175 -1 191 321 50 43 chr21 32972625 32972765 -11934805 - MIR SINE MIR -32 230 90 527 260 104 0 chr21 32973637 32973810 -11933760 + MIR SINE MIR 36 226 -36 318 180 0 0 chr21 32974743 32974804 -11932766 + (TG)n Simple_repeat Simple_repeat 2 62 0 36 0 0 0 chr21 32974808 32974844 -11932726 + AT_rich Low_complexity Low_complexity 1 36 0 869 182 7 7 chr21 32974844 32974998 -11932572 - FRAM SINE Alu -12 154 1 2253 116 0 0 chr21 32976317 32976620 -11930950 + AluSx SINE Alu 1 303 -9 2346 103 3 6 chr21 32977201 32977513 -11930057 + AluSq SINE Alu 1 311 -2 1972 141 7 0 chr21 32977822 32978121 -11929449 - AluSx SINE Alu -11 301 1 378 0 0 0 chr21 32978619 32978661 -11928909 + (TG)n Simple_repeat Simple_repeat 1 42 0 706 286 99 40 chr21 32978905 32979408 -11928162 - L1ME4a LINE L1 -37 6084 5552 2210 105 0 3 chr21 32979496 32979790 -11927780 - AluSx SINE Alu -19 293 1 309 287 45 25 chr21 32979812 32979843 -11927727 - L1MA10 LINE L1 0 6334 6304 2524 257 71 14 chr21 32979843 32980672 -11926898 - L1ME3 LINE L1 -22 6140 5265 389 301 29 15 chr21 32980808 32980944 -11926626 - MIR SINE MIR -115 147 10 1670 142 151 37 chr21 32981499 32981824 -11925746 + THE1B LTR MaLR 1 362 -2 324 231 50 25 chr21 32981874 32981978 -11925592 - MIR SINE MIR -93 115 18 1571 229 44 41 chr21 32982179 32982638 -11924932 - MLT1C LTR MaLR 0 467 8 198 0 0 0 chr21 32983439 32983461 -11924109 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 549 0 0 0 chr21 32983460 32983521 -11924049 + (TC)n Simple_repeat Simple_repeat 1 61 0 253 279 0 0 chr21 32983879 32983940 -11923630 + (CATA)n Simple_repeat Simple_repeat 4 64 0 244 255 64 101 chr21 32983943 32984131 -11923439 + MER112 DNA MER1_type 65 245 -15 435 294 5 27 chr21 32985167 32985351 -11922219 + GA-rich Low_complexity Low_complexity 1 180 0 546 289 38 0 chr21 32985794 32985953 -11921617 + MER5B DNA MER1_type 6 170 -8 1769 146 24 17 chr21 32986223 32986510 -11921060 + AluJo SINE Alu 1 289 -23 926 126 66 0 chr21 32987122 32987289 -11920281 + L1MA7 LINE L1 6112 6289 -2 209 357 61 10 chr21 32987444 32987542 -11920028 + MIR SINE MIR 20 122 -86 2551 51 3 0 chr21 32987816 32988111 -11919459 - AluY SINE Alu -15 296 1 252 350 0 0 chr21 32988176 32988256 -11919314 + (TG)n Simple_repeat Simple_repeat 2 81 0 * 435 275 47 0 chr21 32988197 32988368 -11919202 + (TA)n Simple_repeat Simple_repeat 2 180 0 261 125 14 56 chr21 32988429 32988501 -11919069 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 277 245 21 32 chr21 32988508 32988602 -11918968 - MER5A DNA MER1_type -83 106 14 * 312 230 93 24 chr21 32988595 32988740 -11918830 - MIR SINE MIR -55 153 8 1066 232 42 76 chr21 32989275 32989555 -11918015 + MER58D DNA MER1_type 16 281 -2139 2138 133 0 0 chr21 32989555 32989848 -11917722 + AluSx SINE Alu 2 294 -18 1066 232 42 76 chr21 32989848 32989950 -11917620 + MER58D DNA MER1_type 281 385 -1 465 248 77 9 chr21 32991010 32991158 -11916412 + MIR SINE MIR 35 192 -65 895 273 184 15 chr21 32992498 32992890 -11914680 - L1MC4a LINE L1 -1856 5952 5495 210 186 0 23 chr21 32993182 32993225 -11914345 + CT-rich Low_complexity Low_complexity 3 44 0 25 31 0 0 chr21 32993304 32993336 -11914234 + AT_rich Low_complexity Low_complexity 1 32 0 2940 182 28 0 chr21 32993357 32993885 -11913685 - MER67A LTR ERV1 0 543 1 457 246 82 77 chr21 32994131 32994326 -11913244 + MER63A DNA MER1_type 4 199 -11 1272 151 82 115 chr21 32994550 32994667 -11912903 - AluJo SINE Alu -17 295 176 271 59 20 20 chr21 32994667 32994718 -11912852 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1272 151 82 115 chr21 32994718 32994905 -11912665 - AluJo SINE Alu -136 176 1 181 255 0 0 chr21 32995918 32995965 -11911605 + L2 LINE L2 3255 3301 -12 222 214 0 0 chr21 32995965 32996007 -11911563 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 513 298 40 0 chr21 32996036 32996187 -11911383 + MIR SINE MIR 4 160 -102 751 192 0 0 chr21 32996190 32996315 -11911255 + FLAM_C SINE Alu 1 125 -8 243 269 0 0 chr21 32996377 32996444 -11911126 + (TA)n Simple_repeat Simple_repeat 1 67 0 197 294 0 54 chr21 32996446 32996538 -11911032 + MIR SINE MIR 160 246 -16 342 269 56 56 chr21 32997222 32997382 -11910188 - MIR SINE MIR -17 245 86 186 347 0 13 chr21 32997636 32997711 -11909859 + MIR SINE MIR 75 148 -114 1072 208 20 58 chr21 32997887 32998181 -11909389 - L1ME3A LINE L1 -8 6162 5880 1805 123 0 0 chr21 32998228 32998472 -11909098 + AluSx SINE Alu 1 244 -68 47 44 0 0 chr21 32998527 32998595 -11908975 + AT_rich Low_complexity Low_complexity 1 68 0 2395 246 56 93 chr21 32998641 32999383 -11908187 - L1MCa LINE L1 -2283 4143 3375 2267 125 0 0 chr21 32999383 32999694 -11907876 - AluSx SINE Alu -1 311 1 2395 246 56 93 chr21 32999694 33000637 -11906933 - L1MCa LINE L1 -3051 3375 2520 983 241 35 13 chr21 33000661 33000868 -11906702 - MLT1F1 LTR MaLR 0 567 356 701 193 0 0 chr21 33000868 33000987 -11906583 + Tigger7 DNA MER2_type 1 119 -2368 387 278 113 26 chr21 33001027 33001221 -11906349 - L1MCa LINE L1 -4025 2582 2372 649 242 78 7 chr21 33001222 33001375 -11906195 + MLT1F1 LTR MaLR 8 171 -396 2674 177 55 21 chr21 33001399 33001956 -11905614 - Tigger7 DNA MER2_type -125 2462 10 920 210 26 10 chr21 33001987 33002182 -11905388 + MLT1F1 LTR MaLR 370 567 0 302 289 161 35 chr21 33002184 33002444 -11905126 - L1MCa LINE L1 -4228 2379 2087 961 283 46 60 chr21 33002453 33002819 -11904751 - L1MCa LINE L1 -4592 2015 1646 2598 64 0 0 chr21 33002819 33003130 -11904440 - AluY SINE Alu 0 311 1 961 283 46 60 chr21 33003130 33003189 -11904381 - L1MCa LINE L1 -4961 1646 1588 557 201 149 88 chr21 33003189 33003387 -11904183 + MER7A DNA MER2_type 1 226 -2812 189 0 0 0 chr21 33003387 33003408 -11904162 + (TG)n Simple_repeat Simple_repeat 2 22 0 557 201 149 88 chr21 33003408 33003537 -11904033 + MER7A DNA MER2_type 226 346 0 961 283 46 60 chr21 33003537 33004013 -11903557 - L1MCa LINE L1 -5019 1588 905 423 0 0 0 chr21 33004525 33004572 -11902998 + (CA)n Simple_repeat Simple_repeat 2 48 0 1065 241 81 60 chr21 33006479 33006588 -11900982 - L1ME3 LINE L1 -202 5960 5855 2458 95 0 0 chr21 33006588 33006892 -11900678 - AluSq SINE Alu -9 304 1 1065 241 81 60 chr21 33006892 33007263 -11900307 - L1ME3 LINE L1 -307 5855 5470 1736 216 17 8 chr21 33007645 33008007 -11899563 + MLT1A1 LTR MaLR 1 365 0 1004 269 121 26 chr21 33008487 33008951 -11898619 - MLT1J LTR MaLR 0 511 4 279 247 41 0 chr21 33009474 33009547 -11898023 + L2 LINE L2 2376 2451 -863 811 131 183 7 chr21 33009568 33009721 -11897849 + MSTA LTR MaLR 1 180 -248 954 148 23 120 chr21 33009721 33009979 -11897591 - AluJb SINE Alu 0 322 86 1380 152 97 8 chr21 33009979 33010216 -11897354 + MSTA LTR MaLR 171 428 0 435 179 0 0 chr21 33010216 33010300 -11897270 + L2 LINE L2 2489 2572 -742 463 300 17 0 chr21 33010321 33010441 -11897129 + MER91A DNA MER1_type 53 174 -22 271 225 485 0 chr21 33010469 33010638 -11896932 + L2 LINE L2 2714 2964 -350 1826 183 34 66 chr21 33010764 33011018 -11896552 + MLT1C LTR MaLR 13 247 -220 1115 201 50 104 chr21 33011018 33011402 -11896168 - MLT1A1 LTR MaLR -2 363 1 1826 183 34 66 chr21 33011402 33011616 -11895954 + MLT1C LTR MaLR 247 466 -1 359 287 134 19 chr21 33011617 33011774 -11895796 + L2 LINE L2 3139 3313 0 2226 115 39 39 chr21 33011972 33012336 -11895234 + THE1B LTR MaLR 1 364 0 398 300 83 10 chr21 33012528 33012763 -11894807 - MIR SINE MIR 0 262 11 2817 149 24 4 chr21 33013335 33013791 -11893779 - MLT1C LTR MaLR -2 465 1 453 240 7 75 chr21 33014565 33014651 -11892919 - MER45A DNA AcHobo -1404 177 103 2339 104 0 0 chr21 33014651 33014948 -11892622 + AluSg SINE Alu 1 297 -13 453 240 7 75 chr21 33014948 33015007 -11892563 - MER45A DNA AcHobo -1478 103 42 185 198 185 62 chr21 33015024 33015105 -11892465 + L2 LINE L2 3182 3272 0 788 172 17 46 chr21 33016096 33016270 -11891300 + L1MC3 LINE L1 7101 7269 -516 2954 128 7 0 chr21 33016588 33017019 -11890551 + MER57B LTR ERV1 1 434 0 2406 65 16 7 chr21 33017305 33017613 -11889957 - AluY SINE Alu 0 311 1 235 330 0 34 chr21 33019328 33019416 -11888154 + GA-rich Low_complexity Low_complexity 6 90 0 300 53 0 0 chr21 33019646 33019684 -11887886 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr21 33020380 33020401 -11887169 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 33021354 33021398 -11886172 + AT_rich Low_complexity Low_complexity 1 44 0 210 37 0 0 chr21 33021499 33021526 -11886044 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr21 33021618 33021658 -11885912 + AT_rich Low_complexity Low_complexity 1 40 0 23 78 0 0 chr21 33022133 33022184 -11885386 + GC_rich Low_complexity Low_complexity 1 51 0 266 204 8 38 chr21 33023320 33023452 -11884118 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 1327 212 55 25 chr21 33023485 33023761 -11883809 + MER58B DNA MER1_type 4 293 -2127 2265 118 0 0 chr21 33023761 33024065 -11883505 - AluSx SINE Alu -8 304 1 1327 212 55 25 chr21 33024065 33024113 -11883457 + MER58B DNA MER1_type 293 338 -3 228 265 0 15 chr21 33024292 33024360 -11883210 - MER116 DNA Mariner 0 80 14 1012 152 22 78 chr21 33024795 33025025 -11882545 - MER20 DNA MER1_type 0 219 3 201 211 18 18 chr21 33025390 33025447 -11882123 + CT-rich Low_complexity Low_complexity 2 58 0 1234 152 43 9 chr21 33027873 33028084 -11879486 + MER20 DNA MER1_type 1 218 -1 2026 139 42 0 chr21 33028605 33028935 -11878635 - MER2 DNA MER2_type 0 344 1 219 296 189 25 chr21 33031934 33032093 -11875477 + MIR3 SINE MIR 24 208 0 372 267 35 35 chr21 33032350 33032466 -11875104 - L2 LINE L2 -12 3260 3145 190 196 258 52 chr21 33032576 33032673 -11874897 - L2 LINE L2 0 3313 3197 412 295 146 25 chr21 33032808 33033027 -11874543 + MIR SINE MIR 6 249 -13 2457 71 0 0 chr21 33033327 33033638 -11873932 + AluY SINE Alu 1 311 0 1290 261 34 11 chr21 33034011 33034367 -11873203 + L1MCb LINE L1 5 368 -5677 * 3806 229 52 10 chr21 33034343 33034804 -11872766 + L1MCb LINE L1 669 1109 -5455 2138 87 3 35 chr21 33034804 33035114 -11872456 - AluSx SINE Alu -12 300 1 3806 229 52 10 chr21 33035114 33037255 -11870315 + L1MCb LINE L1 1109 3639 -2925 266 301 112 19 chr21 33038544 33038746 -11868824 + MIR SINE MIR 33 250 -12 299 344 61 6 chr21 33040613 33040776 -11866794 + MIR SINE MIR 19 190 -72 24 0 0 0 chr21 33042903 33042927 -11864643 + AT_rich Low_complexity Low_complexity 1 24 0 1130 167 20 5 chr21 33043140 33043338 -11864232 + MER20 DNA MER1_type 2 202 -17 244 291 124 34 chr21 33043854 33044036 -11863534 - MIR3 SINE MIR -11 197 7 217 225 0 0 chr21 33048422 33048462 -11859108 + polypurine Low_complexity Low_complexity 6 45 0 276 88 175 0 chr21 33049078 33049135 -11858435 + MIR SINE MIR 82 148 -60 1655 87 87 66 chr21 33050429 33050718 -11856852 + AluSq SINE Alu 1 295 -18 420 296 138 6 chr21 33050942 33051101 -11856469 + MIR3 SINE MIR 20 199 -9 385 308 45 15 chr21 33051457 33051590 -11855980 - MIR SINE MIR -21 241 105 2356 90 3 0 chr21 33053492 33053804 -11853766 - AluSq SINE Alu 0 313 1 1160 209 118 55 chr21 33055768 33056166 -11851404 + MLT1C LTR MaLR 45 467 0 1314 190 104 73 chr21 33056170 33056488 -11851082 + MSTD LTR MaLR 1 335 -61 2084 113 3 25 chr21 33056488 33056806 -11850764 - AluSx SINE Alu -1 311 1 1314 190 104 73 chr21 33056806 33056871 -11850699 + MSTD LTR MaLR 335 396 0 7164 221 30 46 chr21 33056873 33058636 -11848934 + MSTD-int LTR MaLR 2 1735 0 1565 210 99 9 chr21 33058636 33058970 -11848600 + MSTD LTR MaLR 1 364 -32 414 284 136 30 chr21 33059007 33059243 -11848327 - MIR SINE MIR -1 261 1 216 244 0 0 chr21 33059844 33059885 -11847685 + polypurine Low_complexity Low_complexity 6 46 0 308 310 187 7 chr21 33060680 33060835 -11846735 + MIR SINE MIR 24 206 -56 2200 70 0 3 chr21 33063157 33063465 -11844105 - AluY SINE Alu 0 307 1 216 67 0 0 chr21 33064080 33064110 -11843460 + (TG)n Simple_repeat Simple_repeat 2 31 0 385 174 82 41 chr21 33064267 33064365 -11843205 - MER5A DNA MER1_type -84 105 4 182 103 0 51 chr21 33064677 33064716 -11842854 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 180 0 0 0 chr21 33065253 33065273 -11842297 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 229 227 91 80 chr21 33068310 33068398 -11839172 + L3b LINE CR1 1302 1390 -193 22 56 0 0 chr21 33068963 33068999 -11838571 + AT_rich Low_complexity Low_complexity 1 36 0 299 250 95 43 chr21 33069153 33069269 -11838301 - MIR3 SINE MIR -21 187 66 200 289 28 14 chr21 33069282 33069424 -11838146 + (CA)n Simple_repeat Simple_repeat 2 145 0 445 182 0 61 chr21 33069735 33069834 -11837736 - MER5A DNA MER1_type -83 106 14 181 316 53 21 chr21 33070406 33070501 -11837069 + MIR SINE MIR 31 128 -80 931 294 118 15 chr21 33071676 33072081 -11835489 + L2 LINE L2 2867 3313 0 1867 119 41 7 chr21 33072283 33072577 -11834993 + AluSx SINE Alu 3 306 -6 221 248 0 9 chr21 33072722 33072831 -11834739 + (CA)n Simple_repeat Simple_repeat 1 108 0 1972 125 0 10 chr21 33072848 33073152 -11834418 + AluSg SINE Alu 1 301 -9 313 263 6 6 chr21 33073181 33073352 -11834218 + (CA)n Simple_repeat Simple_repeat 2 172 0 400 200 29 18 chr21 33073407 33073577 -11833993 + (CATA)n Simple_repeat Simple_repeat 4 175 0 264 122 0 0 chr21 33074638 33074679 -11832891 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 189 0 0 0 chr21 33076256 33076277 -11831293 + (T)n Simple_repeat Simple_repeat 1 21 0 329 338 58 32 chr21 33076536 33076690 -11830880 - MIR3 SINE MIR -1 207 50 26 30 0 0 chr21 33077550 33077583 -11829987 + AT_rich Low_complexity Low_complexity 1 33 0 320 274 37 52 chr21 33077604 33077739 -11829831 - MIR SINE MIR -50 212 80 415 296 53 7 chr21 33078120 33078272 -11829298 - MIR SINE MIR 0 262 104 273 236 73 45 chr21 33078330 33078440 -11829130 - MIR SINE MIR -37 225 113 2280 79 0 0 chr21 33078504 33078796 -11828774 - AluSx SINE Alu -20 292 1 678 13 54 51 chr21 33079312 33079558 -11828012 + (TA)n Simple_repeat Simple_repeat 1 246 0 249 33 0 0 chr21 33079975 33080005 -11827565 + (TTA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr21 33080823 33080871 -11826699 + AT_rich Low_complexity Low_complexity 1 48 0 236 331 73 16 chr21 33080973 33081097 -11826473 - MIR SINE MIR 0 262 132 329 318 30 15 chr21 33081456 33081588 -11825982 - MIR3 SINE MIR -39 169 36 2073 95 0 7 chr21 33081946 33082263 -11825307 + AluY SINE Alu 1 315 0 344 286 292 0 chr21 33083563 33083734 -11823836 + MIR SINE MIR 39 259 -3 2033 117 0 3 chr21 33083877 33084175 -11823395 - AluSx SINE Alu -15 297 1 1257 137 0 10 chr21 33084471 33084675 -11822895 + AluSg/x SINE Alu 110 311 -1 1958 110 0 14 chr21 33085491 33085795 -11821775 + AluSx SINE Alu 8 307 0 223 175 18 70 chr21 33086451 33086508 -11821062 - MIR3 SINE MIR -45 163 110 339 375 35 20 chr21 33086574 33086774 -11820796 + MIR3 SINE MIR 3 205 -3 206 291 117 82 chr21 33087600 33087806 -11819764 - L3b LINE CR1 -68 1515 1303 368 274 0 0 chr21 33088488 33088572 -11818998 - MIR SINE MIR -90 172 89 249 359 13 58 chr21 33088859 33089015 -11818555 - L3b LINE CR1 -325 1258 1110 454 288 6 31 chr21 33090408 33090571 -11816999 + MIR SINE MIR 77 235 -27 267 79 0 0 chr21 33090580 33090618 -11816952 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr21 33092079 33092102 -11815468 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr21 33092177 33092197 -11815373 + (GA)n Simple_repeat Simple_repeat 1 20 0 373 273 11 0 chr21 33092245 33092333 -11815237 + MIR3 SINE MIR 97 185 -23 1518 209 98 39 chr21 33092457 33092840 -11814730 - MLT1C LTR MaLR 0 467 53 484 300 27 40 chr21 33093082 33093282 -11814288 - MIR SINE MIR -46 216 16 1938 94 0 4 chr21 33093612 33093877 -11813693 - AluSg SINE Alu -8 302 39 906 233 63 18 chr21 33094996 33095219 -11812351 + MIR SINE MIR 23 255 -7 438 20 0 0 chr21 33095336 33095387 -11812183 + (TG)n Simple_repeat Simple_repeat 2 52 0 1679 152 40 0 chr21 33097176 33097297 -11810273 + AluJb SINE Alu 1 116 -196 309 36 55 0 chr21 33097297 33097352 -11810218 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 1679 152 40 0 chr21 33097352 33097507 -11810063 + AluJb SINE Alu 116 288 -24 353 304 109 55 chr21 33098505 33098926 -11808644 + L2 LINE L2 2829 3272 0 276 313 67 37 chr21 33100376 33100463 -11807107 - MIR3 SINE MIR -46 162 68 967 197 34 0 chr21 33100463 33100671 -11806899 + MER20 DNA MER1_type 1 215 -4 276 313 67 37 chr21 33100671 33100717 -11806853 - MIR3 SINE MIR -140 68 25 2167 111 0 0 chr21 33100739 33101045 -11806525 + AluSc SINE Alu 1 306 -3 2171 108 0 0 chr21 33101908 33102205 -11805365 - AluSx SINE Alu -15 297 1 21 57 0 0 chr21 33102608 33102643 -11804927 + AT_rich Low_complexity Low_complexity 1 35 0 956 182 74 5 chr21 33102762 33102965 -11804605 - MER20 DNA MER1_type -2 217 1 188 318 16 16 chr21 33103059 33103122 -11804448 - L2 LINE L2 -50 3263 3201 201 74 0 0 chr21 33104185 33104212 -11803358 + (TC)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chr21 33104214 33104243 -11803327 + (CA)n Simple_repeat Simple_repeat 1 29 0 2253 97 3 3 chr21 33104389 33104697 -11802873 + AluSq SINE Alu 1 308 -5 2311 78 0 7 chr21 33106912 33107218 -11800352 - AluSq SINE Alu -7 306 3 240 163 0 0 chr21 33108231 33108274 -11799296 + A-rich Low_complexity Low_complexity 1 43 0 234 150 0 0 chr21 33108422 33108462 -11799108 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr21 33109405 33109426 -11798144 + AT_rich Low_complexity Low_complexity 1 21 0 469 117 39 0 chr21 33110967 33111044 -11796526 + MADE1 DNA Mariner 1 80 0 27 29 0 0 chr21 33118708 33118742 -11788828 + GC_rich Low_complexity Low_complexity 1 34 0 32 0 0 0 chr21 33118907 33118939 -11788631 + GC_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr21 33120844 33120874 -11786696 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 33121763 33121785 -11785785 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 33122572 33122600 -11784970 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 33123832 33123854 -11783716 + AT_rich Low_complexity Low_complexity 1 22 0 545 261 98 7 chr21 33124773 33124926 -11782644 - MIR SINE MIR -17 245 79 441 0 0 0 chr21 33124942 33124991 -11782579 + (CA)n Simple_repeat Simple_repeat 2 50 0 201 277 53 53 chr21 33125360 33125454 -11782116 - L2 LINE L2 0 3313 3220 21 36 0 0 chr21 33125911 33125939 -11781631 + AT_rich Low_complexity Low_complexity 1 28 0 206 297 162 68 chr21 33126210 33126462 -11781108 - L2 LINE L2 -1040 2274 2047 2290 122 0 0 chr21 33126462 33126774 -11780796 + AluSx SINE Alu 1 312 0 206 297 162 68 chr21 33126774 33127022 -11780548 - L2 LINE L2 -1267 2047 1727 208 329 176 22 chr21 33127121 33127343 -11780227 + L2 LINE L2 2349 2604 -710 1776 193 129 97 chr21 33127826 33128432 -11779138 + MLT1E2 LTR MaLR 1 625 -1 334 317 10 0 chr21 33128844 33128948 -11778622 - MER5A DNA MER1_type -76 113 9 2087 138 0 0 chr21 33128976 33129273 -11778297 - AluSx SINE Alu -13 299 3 1495 175 127 21 chr21 33129296 33129634 -11777936 + MLT1A2 LTR MaLR 1 374 0 253 191 101 45 chr21 33129683 33129772 -11777798 - MIR SINE MIR -51 211 118 815 141 0 16 chr21 33129937 33130058 -11777512 + FLAM_C SINE Alu 14 132 -11 1787 139 38 16 chr21 33130088 33130405 -11777165 - MER33 DNA MER1_type 0 324 1 2098 94 3 11 chr21 33131291 33131605 -11775965 + AluSg SINE Alu 1 312 0 281 254 127 36 chr21 33132783 33132893 -11774677 + MIR3 SINE MIR 77 196 -12 21 0 0 0 chr21 33133252 33133273 -11774297 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 33134416 33134438 -11773132 + AT_rich Low_complexity Low_complexity 1 22 0 442 282 138 21 chr21 33136493 33136681 -11770889 - MIR SINE MIR -10 252 43 422 283 97 21 chr21 33137366 33137603 -11769967 - MER112 DNA MER1_type 0 256 2 402 339 88 0 chr21 33137927 33138098 -11769472 - MIR3 SINE MIR -21 187 2 282 73 0 0 chr21 33138990 33139031 -11768539 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr21 33139650 33139670 -11767900 + (A)n Simple_repeat Simple_repeat 1 20 0 260 168 0 59 chr21 33139914 33140015 -11767555 + CT-rich Low_complexity Low_complexity 3 97 0 1273 183 53 4 chr21 33140847 33141093 -11766477 - AluJo SINE Alu -16 296 39 197 156 0 0 chr21 33141284 33141316 -11766254 + L2 LINE L2 3277 3308 -5 484 270 192 47 chr21 33141580 33142226 -11765344 + L2 LINE L2 2563 3313 0 2046 122 3 7 chr21 33143010 33143298 -11764272 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr21 33143298 33143327 -11764243 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 259 291 70 12 chr21 33144353 33144453 -11763117 - MIR SINE MIR -75 133 35 299 256 132 33 chr21 33145028 33145149 -11762421 + MIR SINE MIR 63 195 -67 485 331 25 0 chr21 33146911 33147068 -11760502 - MIR SINE MIR -55 207 47 2186 123 3 0 chr21 33147910 33148211 -11759359 + AluSg SINE Alu 1 302 -8 2264 107 7 0 chr21 33148689 33148988 -11758582 + AluSc SINE Alu 1 301 -8 810 218 39 68 chr21 33149044 33149278 -11758292 - MIR SINE MIR -21 241 15 288 311 8 34 chr21 33149993 33150112 -11757458 - L2 LINE L2 -23 3290 3175 2750 140 32 36 chr21 33150860 33150915 -11756655 - L1MB3 LINE L1 -4 6179 6125 2103 141 0 0 chr21 33150915 33151220 -11756350 - AluSx SINE Alu -7 305 1 2750 140 32 36 chr21 33151220 33151665 -11755905 - L1MB3 LINE L1 -58 6125 5681 2004 134 3 7 chr21 33151697 33151995 -11755575 - AluSx SINE Alu -15 297 1 436 323 42 0 chr21 33152370 33152537 -11755033 - MIR SINE MIR -21 241 68 560 209 22 22 chr21 33152920 33153059 -11754511 - MIR SINE MIR 0 262 124 206 246 55 118 chr21 33153641 33153751 -11753819 + L2 LINE L2 2324 2426 -888 341 327 156 53 chr21 33154312 33154710 -11752860 - L2 LINE L2 -20 3252 2814 1853 169 47 33 chr21 33154783 33155143 -11752427 - MLT1A1 LTR MaLR 0 365 1 2115 184 58 22 chr21 33155342 33155793 -11751777 + MLT1C LTR MaLR 1 467 0 316 271 76 0 chr21 33156067 33156211 -11751359 + L1ME4a LINE L1 5961 6115 -6 1834 140 48 3 chr21 33156254 33156547 -11751023 + AluJo SINE Alu 1 306 -6 647 294 0 17 chr21 33157947 33158127 -11749443 + MER5B DNA MER1_type 1 177 -1 835 195 69 11 chr21 33158149 33158323 -11749247 - MER3 DNA MER1_type -18 191 8 2029 96 53 3 chr21 33158473 33158755 -11748815 + AluSx SINE Alu 1 296 -16 224 182 0 30 chr21 33160109 33160175 -11747395 + (TA)n Simple_repeat Simple_repeat 2 65 0 323 239 23 11 chr21 33160259 33160347 -11747223 - L1MC4 LINE L1 -1340 6702 6614 27 0 0 0 chr21 33160347 33160374 -11747196 + AT_rich Low_complexity Low_complexity 1 27 0 539 211 120 7 chr21 33160444 33160586 -11746984 + MER117 DNA MER1_type 2 159 -38 439 223 0 21 chr21 33160587 33160681 -11746889 - MER3 DNA MER1_type -110 99 8 225 0 0 0 chr21 33160781 33160806 -11746764 + (CA)n Simple_repeat Simple_repeat 1 25 0 657 126 48 6 chr21 33161380 33161547 -11746023 + (TA)n Simple_repeat Simple_repeat 1 174 0 338 107 80 13 chr21 33161547 33161622 -11745948 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 525 215 118 7 chr21 33161681 33161825 -11745745 + MER117 DNA MER1_type 2 161 -36 184 352 11 0 chr21 33162356 33162444 -11745126 - L2 LINE L2 -925 2389 2301 187 333 59 0 chr21 33162717 33162768 -11744802 - MIR SINE MIR -168 94 41 23 0 0 0 chr21 33164321 33164344 -11743226 + AT_rich Low_complexity Low_complexity 1 23 0 1239 194 5 0 chr21 33165671 33165888 -11741682 - MER20 DNA MER1_type -1 218 1 183 80 0 0 chr21 33167293 33167318 -11740252 + (TTA)n Simple_repeat Simple_repeat 1 25 0 449 139 0 12 chr21 33168559 33168645 -11738925 + (TCC)n Simple_repeat Simple_repeat 3 87 0 225 132 0 0 chr21 33171868 33171906 -11735664 + (T)n Simple_repeat Simple_repeat 1 38 0 1843 165 7 3 chr21 33174072 33174369 -11733201 - AluJo SINE Alu -14 298 1 240 287 183 47 chr21 33175500 33176051 -11731519 + L2 LINE L2 1775 2400 -914 196 275 125 33 chr21 33176442 33176562 -11731008 + L2 LINE L2 2919 3049 -223 23 0 0 0 chr21 33177234 33177257 -11730313 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr21 33178221 33178263 -11729307 + AT_rich Low_complexity Low_complexity 1 42 0 2254 100 6 31 chr21 33178796 33179115 -11728455 - AluSq SINE Alu -2 311 1 218 359 39 0 chr21 33179835 33179938 -11727632 - L2 LINE L2 -11 3261 3155 209 236 36 0 chr21 33180045 33180100 -11727470 - MIR3 SINE MIR -2 206 150 27 29 0 0 chr21 33180336 33180370 -11727200 + AT_rich Low_complexity Low_complexity 1 34 0 1984 129 21 0 chr21 33180518 33180804 -11726766 + AluSq SINE Alu 1 292 -21 832 56 24 48 chr21 33181386 33181512 -11726058 - L1PA7 LINE L1 -959 5187 5065 7132 60 4 6 chr21 33181512 33182454 -11725116 + L1PA7 LINE L1 5213 6153 -1 238 108 84 169 chr21 33183297 33183380 -11724190 + MLT1L LTR MaLR 24 99 -516 960 240 70 48 chr21 33183441 33183712 -11723858 + MLT1J LTR MaLR 183 459 -52 513 330 84 34 chr21 33184610 33184968 -11722602 + MLT1J2 LTR MaLR 69 444 -6 316 263 21 11 chr21 33185068 33185163 -11722407 + MIR SINE MIR 81 176 -86 270 362 11 22 chr21 33185169 33185354 -11722216 + MER5A DNA MER1_type 7 189 0 295 292 0 0 chr21 33185363 33185452 -11722118 + MIR SINE MIR 174 262 0 7626 29 0 0 chr21 33188396 33189274 -11718296 + L1PA3 LINE L1 5277 6154 -1 756 208 46 0 chr21 33189375 33189548 -11718022 + MIR SINE MIR 75 255 -7 700 222 111 74 chr21 33190229 33190526 -11717044 + MLT1J2 LTR MaLR 1 308 -142 1962 98 68 4 chr21 33191155 33191463 -11716107 + AluSc SINE Alu 1 325 0 1923 154 20 20 chr21 33191949 33192254 -11715316 - AluJo SINE Alu -7 305 1 253 176 0 0 chr21 33193068 33193119 -11714451 - MER5B DNA MER1_type -122 56 6 225 0 0 0 chr21 33194048 33194073 -11713497 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 2454 77 0 7 chr21 33194268 33194578 -11712992 + AluSc SINE Alu 1 308 -1 287 210 86 12 chr21 33194768 33194849 -11712721 + MIR SINE MIR 50 136 -72 390 369 0 0 chr21 33194942 33195118 -11712452 + (CA)n Simple_repeat Simple_repeat 1 176 0 410 299 0 37 chr21 33195141 33195328 -11712242 + (CA)n Simple_repeat Simple_repeat 1 180 0 183 186 0 0 chr21 33195563 33195606 -11711964 + A-rich Low_complexity Low_complexity 1 43 0 386 315 94 11 chr21 33196135 33196316 -11711254 - MIR SINE MIR -51 211 16 22 0 0 0 chr21 33196326 33196348 -11711222 + AT_rich Low_complexity Low_complexity 1 22 0 619 291 26 5 chr21 33196348 33196537 -11711033 - MIR SINE MIR 0 262 70 1948 111 0 4 chr21 33197141 33197411 -11710159 + AluSg SINE Alu 42 310 0 213 240 10 50 chr21 33199457 33199557 -11708013 + A-rich Low_complexity Low_complexity 3 98 0 262 214 0 0 chr21 33200728 33200784 -11706786 - MIR SINE MIR -55 207 152 608 162 9 4 chr21 33200833 33200952 -11706618 + L1MC4 LINE L1 7869 8042 0 180 333 0 14 chr21 33200953 33201022 -11706548 + MIR SINE MIR 20 87 -175 243 245 7 143 chr21 33201026 33201173 -11706397 - MIR SINE MIR -48 214 88 454 78 13 13 chr21 33201566 33201643 -11705927 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 318 292 45 45 chr21 33202975 33203129 -11704441 + L2 LINE L2 2211 2364 -950 189 227 57 91 chr21 33203413 33203501 -11704069 + MIR SINE MIR 52 136 -126 231 208 19 0 chr21 33205012 33205065 -11702505 - MIR SINE MIR -117 145 92 1830 149 25 28 chr21 33205343 33205666 -11701904 - MER2 DNA MER2_type -23 322 1 23 0 0 0 chr21 33206417 33206440 -11701130 + AT_rich Low_complexity Low_complexity 1 23 0 805 200 13 13 chr21 33206443 33206598 -11700972 - MER106B DNA MER1_type -904 155 1 2251 61 0 55 chr21 33207987 33208299 -11699271 - AluY SINE Alu -16 295 1 459 35 0 0 chr21 33208985 33209042 -11698528 + (CA)n Simple_repeat Simple_repeat 2 58 0 396 291 155 15 chr21 33209985 33210191 -11697379 + MIR SINE MIR 28 262 0 189 0 0 0 chr21 33212459 33212480 -11695090 + (TG)n Simple_repeat Simple_repeat 1 21 0 2321 107 0 0 chr21 33212629 33212929 -11694641 - AluSg SINE Alu -10 300 1 274 328 52 9 chr21 33212929 33213045 -11694525 - MIR SINE MIR -114 148 28 190 347 99 35 chr21 33213822 33214338 -11693232 - L2 LINE L2 -736 2578 2030 2081 130 17 3 chr21 33215929 33216230 -11691340 - AluJb SINE Alu -7 305 1 1648 255 51 5 chr21 33216527 33216959 -11690611 + MLT1C LTR MaLR 16 467 0 189 0 0 0 chr21 33219056 33219077 -11688493 + (TC)n Simple_repeat Simple_repeat 2 22 0 2254 106 3 0 chr21 33219077 33219370 -11688200 - AluSq SINE Alu -19 294 1 1837 65 5 0 chr21 33220735 33220952 -11686618 - AluSq SINE Alu -95 218 1 180 333 42 31 chr21 33221260 33221356 -11686214 + L2 LINE L2 2896 2992 -280 374 275 30 15 chr21 33221584 33221606 -11685964 - MIR SINE MIR -67 141 121 348 24 0 0 chr21 33221606 33221647 -11685923 + (ATG)n Simple_repeat Simple_repeat 3 43 0 374 275 30 15 chr21 33221647 33221756 -11685814 - MIR SINE MIR -87 121 45 1589 219 94 5 chr21 33221769 33222193 -11685377 + MLT1C LTR MaLR 6 467 0 326 290 31 43 chr21 33222519 33222681 -11684889 - L2 LINE L2 -37 3276 3117 213 39 0 0 chr21 33222736 33222762 -11684808 + (A)n Simple_repeat Simple_repeat 1 26 0 1032 115 0 0 chr21 33223560 33223911 -11683659 + (CA)n Simple_repeat Simple_repeat 1 351 0 23 33 0 0 chr21 33224280 33224310 -11683260 + AT_rich Low_complexity Low_complexity 1 30 0 1527 99 17 3 chr21 33224380 33224612 -11682958 + L1MA2 LINE L1 6060 6288 -15 2256 128 0 0 chr21 33225497 33225801 -11681769 - AluJb SINE Alu -7 305 2 180 200 0 0 chr21 33225943 33225983 -11681587 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 203 260 26 39 chr21 33226154 33226231 -11681339 - L3 LINE CR1 -2 1575 1500 354 304 0 8 chr21 33227733 33227858 -11679712 - L3b LINE CR1 -183 1400 1277 2538 74 0 0 chr21 33228591 33228902 -11678668 - AluY SINE Alu 0 311 1 2658 68 0 0 chr21 33230290 33230601 -11676969 - AluY SINE Alu 0 311 1 192 272 69 99 chr21 33230763 33230965 -11676605 - L3b LINE CR1 -181 1402 1207 300 326 87 22 chr21 33231003 33231187 -11676383 + L2 LINE L2 2340 2535 -779 407 143 0 82 chr21 33231251 33231349 -11676221 - L1MB7 LINE L1 0 6184 6095 261 83 0 0 chr21 33231370 33231406 -11676164 + (TA)n Simple_repeat Simple_repeat 1 36 0 408 234 29 22 chr21 33231406 33231543 -11676027 - L1MB4 LINE L1 -26 6154 6017 * 2485 231 46 8 chr21 33231539 33232169 -11675401 + L1 LINE L1 3966 4623 -1523 207 69 0 0 chr21 33232169 33232198 -11675372 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2485 231 46 8 chr21 33232198 33232225 -11675345 + L1 LINE L1 4623 4648 -1498 707 265 104 45 chr21 33232232 33232444 -11675126 + L2 LINE L2 2931 3175 -138 2219 103 0 0 chr21 33232444 33232789 -11674781 - AluSx SINE Alu 0 345 1 707 265 104 45 chr21 33232789 33232930 -11674640 + L2 LINE L2 3175 3306 -7 21 0 0 0 chr21 33235502 33235523 -11672047 + AT_rich Low_complexity Low_complexity 1 21 0 209 324 0 0 chr21 33236669 33236740 -11670830 + MIR SINE MIR 192 262 0 819 214 132 10 chr21 33237055 33237344 -11670226 + MER33 DNA MER1_type 1 324 0 225 132 0 0 chr21 33238960 33238998 -11668572 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 197 292 34 34 chr21 33239892 33239981 -11667589 + MIR3 SINE MIR 73 161 -47 321 26 0 0 chr21 33240676 33240714 -11666856 + (CA)n Simple_repeat Simple_repeat 2 39 0 3119 127 6 68 chr21 33240753 33241296 -11666274 - MER75 DNA T2_type -5 509 1 271 230 138 72 chr21 33241342 33241494 -11666076 - MER117 DNA MER1_type -35 162 1 1104 207 32 0 chr21 33242894 33243111 -11664459 - MER58A DNA MER1_type 0 224 1 1126 263 73 26 chr21 33243600 33244069 -11663501 + L1ME4a LINE L1 5456 5939 -182 197 303 50 10 chr21 33244454 33244553 -11663017 + MIR SINE MIR 31 133 -75 811 263 35 4 chr21 33245145 33245373 -11662197 + MIR SINE MIR 13 247 -15 578 282 41 27 chr21 33245745 33245965 -11661605 - MIR SINE MIR -10 252 30 207 0 0 0 chr21 33246943 33246966 -11660604 + (TG)n Simple_repeat Simple_repeat 2 24 0 280 259 117 25 chr21 33247588 33247750 -11659820 + MIR3 SINE MIR 31 207 -1 252 128 0 234 chr21 33248035 33248081 -11659489 + MLT1B LTR MaLR 1 16 -374 1969 160 0 0 chr21 33248081 33248387 -11659183 - AluSx SINE Alu -6 306 1 252 128 0 234 chr21 33248387 33248434 -11659136 + MLT1B LTR MaLR 16 72 -318 * 850 191 55 9 chr21 33248409 33248590 -11658980 + MLT1C LTR MaLR 300 467 0 221 197 182 0 chr21 33248687 33248753 -11658817 - MER91A DNA MER1_type -29 167 90 544 271 7 0 chr21 33248764 33248904 -11658666 - MER91A DNA MER1_type -38 158 18 184 242 143 22 chr21 33249245 33249336 -11658234 + L2 LINE L2 2898 2999 -273 567 219 8 8 chr21 33251262 33251390 -11656180 + MIR SINE MIR 112 239 -23 205 239 0 60 chr21 33251356 33251423 -11656147 + L2 LINE L2 3210 3272 0 * 229 299 75 0 chr21 33252480 33252547 -11655023 + MER63 DNA MER1_type 10 707 -355 499 221 126 56 chr21 33252578 33252674 -11654896 + MER63 DNA MER1_type 786 874 -188 2094 121 0 0 chr21 33252674 33252983 -11654587 + AluSq SINE Alu 1 309 0 499 221 126 56 chr21 33252983 33253013 -11654557 + MER63 DNA MER1_type 874 900 -162 1938 154 7 3 chr21 33253013 33253305 -11654265 - AluJb SINE Alu -19 293 1 499 221 126 56 chr21 33253305 33253406 -11654164 + MER63 DNA MER1_type 900 1032 -30 236 158 26 40 chr21 33253963 33254040 -11653530 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1398 264 42 16 chr21 33254096 33254520 -11653050 + MLT1J LTR MaLR 69 503 -8 1044 271 49 27 chr21 33254893 33255258 -11652312 - MARNA DNA Mariner -195 391 19 25 31 0 0 chr21 33256582 33256614 -11650956 + AT_rich Low_complexity Low_complexity 1 32 0 548 170 0 0 chr21 33257404 33257498 -11650072 - MER5A DNA MER1_type -86 103 10 311 323 47 0 chr21 33258268 33258395 -11649175 + MER5A DNA MER1_type 57 189 0 647 191 0 32 chr21 33259950 33260076 -11647494 - MER20 DNA MER1_type -62 157 36 2465 88 0 0 chr21 33260123 33260428 -11647142 + AluY SINE Alu 1 305 -6 3748 155 29 25 chr21 33260625 33261128 -11646442 + L1MA8 LINE L1 4982 5490 -801 2397 84 3 0 chr21 33261128 33261425 -11646145 + AluSp SINE Alu 1 298 -15 3748 155 29 25 chr21 33261425 33261885 -11645685 + L1MA8 LINE L1 5490 5947 -344 655 215 4 8 chr21 33263002 33263247 -11644323 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 408 311 43 12 chr21 33264133 33264294 -11643276 + MIR SINE MIR 4 169 -93 901 191 5 34 chr21 33264609 33264813 -11642757 + MER20 DNA MER1_type 22 219 0 449 287 89 15 chr21 33265225 33265427 -11642143 - MIR SINE MIR -28 234 18 195 302 54 47 chr21 33265494 33265643 -11641927 + MIR SINE MIR 48 197 -65 531 321 19 0 chr21 33267056 33267215 -11640355 + MER96 DNA MER1_type? 1 162 -13 416 317 21 42 chr21 33267653 33267893 -11639677 + MIR SINE MIR 28 262 0 397 296 56 7 chr21 33268141 33268283 -11639287 - MIR SINE MIR -54 208 60 378 0 0 0 chr21 33268634 33268676 -11638894 + (TC)n Simple_repeat Simple_repeat 2 43 0 306 0 0 0 chr21 33268675 33268709 -11638861 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 201 39 0 0 chr21 33268708 33268734 -11638836 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 305 215 51 13 chr21 33269337 33269416 -11638154 + MIR SINE MIR 36 117 -91 39 38 0 0 chr21 33269482 33269535 -11638035 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr21 33269948 33269970 -11637600 + AT_rich Low_complexity Low_complexity 1 22 0 2274 89 7 10 chr21 33270553 33270856 -11636714 + AluSc SINE Alu 1 302 -7 253 121 0 35 chr21 33271679 33271737 -11635833 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 377 232 86 60 chr21 33274455 33274606 -11632964 - MIR SINE MIR -2 260 106 1693 166 68 15 chr21 33275425 33275751 -11631819 + MLT1B LTR MaLR 1 343 -47 432 0 0 0 chr21 33277576 33277624 -11629946 + (CA)n Simple_repeat Simple_repeat 2 49 0 333 0 0 0 chr21 33277623 33277660 -11629910 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 369 0 0 0 chr21 33280047 33280088 -11627482 + (CA)n Simple_repeat Simple_repeat 2 42 0 2498 58 0 0 chr21 33282565 33282858 -11624712 - AluY SINE Alu -18 293 1 421 233 218 23 chr21 33283063 33283196 -11624374 + MER5A DNA MER1_type 31 189 0 287 133 61 41 chr21 33285045 33285125 -11622445 + (TATATG)n Simple_repeat Simple_repeat 3 80 -22 189 0 0 0 chr21 33285125 33285146 -11622424 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3539 153 30 25 chr21 33285146 33285775 -11621795 - L1MB1 LINE L1 -9 6159 5528 287 133 61 41 chr21 33285775 33285791 -11621779 + (TATATG)n Simple_repeat Simple_repeat 79 102 0 229 150 0 0 chr21 33285791 33285831 -11621739 + L1MC4 LINE L1 6662 6701 -1341 213 39 0 0 chr21 33286548 33286574 -11620996 + (CA)n Simple_repeat Simple_repeat 2 27 0 201 195 0 0 chr21 33286575 33286616 -11620954 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2198 119 3 3 chr21 33286802 33287105 -11620465 - AluSx SINE Alu -9 303 1 818 239 74 0 chr21 33287431 33287594 -11619976 - MER96 DNA MER1_type 0 175 1 292 361 0 19 chr21 33288097 33288205 -11619365 + L2 LINE L2 3208 3313 0 454 273 116 33 chr21 33288506 33288748 -11618822 + MLT1H LTR MaLR 263 524 -25 22 0 0 0 chr21 33289362 33289384 -11618186 + AT_rich Low_complexity Low_complexity 1 22 0 5694 197 45 7 chr21 33289385 33291329 -11616241 - L1PA15 LINE L1 0 6165 4124 2112 199 24 24 chr21 33292499 33292956 -11614614 + L1MB4 LINE L1 5724 6180 0 801 89 0 0 chr21 33293526 33293650 -11613920 + (CA)n Simple_repeat Simple_repeat 2 125 0 476 225 75 64 chr21 33294489 33294505 -11613065 - MER53 DNA DNA 0 189 175 217 27 81 0 chr21 33294505 33294542 -11613028 + A-rich Low_complexity Low_complexity 1 40 0 476 225 75 64 chr21 33294542 33294712 -11612858 - MER53 DNA DNA -14 175 1 214 304 0 0 chr21 33295814 33295870 -11611700 - L2 LINE L2 -1 3312 3257 861 201 24 144 chr21 33295879 33296177 -11611393 + MIR SINE MIR 1 262 0 1907 166 18 94 chr21 33296518 33296952 -11610618 + MER57A LTR ERV1 3 403 0 329 215 32 43 chr21 33297097 33297190 -11610380 + MLT1I LTR MaLR 318 409 0 2442 86 0 0 chr21 33297314 33297618 -11609952 + AluSg SINE Alu 1 304 -6 514 257 19 92 chr21 33298915 33299036 -11608534 - MIR SINE MIR -48 214 113 2292 94 7 3 chr21 33299036 33299333 -11608237 + AluSx SINE Alu 1 298 -14 514 257 19 92 chr21 33299333 33299417 -11608153 - MIR SINE MIR -149 113 24 2117 226 55 55 chr21 33300084 33300633 -11606937 - MLT1H LTR MaLR 0 549 1 1261 216 15 11 chr21 33302012 33302280 -11605290 + AluJo SINE Alu 14 282 -30 831 112 0 0 chr21 33302369 33302494 -11605076 + (TA)n Simple_repeat Simple_repeat 2 126 0 2180 193 43 23 chr21 33304226 33304667 -11602903 + MLT1D LTR MaLR 56 505 0 607 257 28 39 chr21 33306506 33306685 -11600885 - MER45A DNA AcHobo 0 178 2 423 0 0 0 chr21 33306804 33306851 -11600719 + (CA)n Simple_repeat Simple_repeat 2 48 0 362 294 91 32 chr21 33306974 33307283 -11600287 - L1ME4a LINE L1 0 6121 5795 305 284 28 46 chr21 33307372 33307481 -11600089 - MIR SINE MIR -57 151 45 1451 219 64 40 chr21 33308235 33308687 -11598883 - MLT1C LTR MaLR 0 467 5 2082 181 131 74 chr21 33309276 33309624 -11597946 + MER7C DNA MER2_type 12 405 -2623 1960 82 0 108 chr21 33309624 33309939 -11597631 - AluSc SINE Alu -3 306 26 2082 181 131 74 chr21 33309939 33310147 -11597423 + MER7C DNA MER2_type 405 600 -2 1936 161 33 25 chr21 33310190 33310557 -11597013 - MLT2C2 LTR ERVL -84 380 11 209 204 0 41 chr21 33310605 33310654 -11596916 - L2 LINE L2 -21 3251 3205 222 318 99 71 chr21 33310856 33310896 -11596674 - L2 LINE L2 -337 2977 2940 267 31 0 0 chr21 33310896 33310928 -11596642 + (CAA)n Simple_repeat Simple_repeat 2 33 0 222 318 99 71 chr21 33310928 33311170 -11596400 - L2 LINE L2 -374 2940 2687 2316 110 18 78 chr21 33312491 33312845 -11594725 - THE1C LTR MaLR 0 375 46 1928 128 39 0 chr21 33312845 33313126 -11594444 + AluSx SINE Alu 14 305 -7 2316 110 18 78 chr21 33313126 33313170 -11594400 - THE1C LTR MaLR -329 46 1 212 232 14 58 chr21 33313184 33313253 -11594317 + GA-rich Low_complexity Low_complexity 1 66 0 488 293 117 14 chr21 33313445 33313498 -11594072 + MLT1H1 LTR MaLR 1 47 -548 2336 144 50 26 chr21 33313498 33313920 -11593650 + MSTB1 LTR MaLR 1 432 0 488 293 117 14 chr21 33313920 33314157 -11593413 + MLT1H1 LTR MaLR 47 392 -203 259 167 136 0 chr21 33314125 33314191 -11593379 + MLT1F LTR MaLR 291 365 -177 * 251 203 16 0 chr21 33314582 33314646 -11592924 + (TA)n Simple_repeat Simple_repeat 1 65 0 595 265 59 10 chr21 33314879 33315083 -11592487 - MIR SINE MIR -1 261 48 798 271 129 32 chr21 33315356 33315581 -11591989 - MLT1I LTR MaLR 0 409 207 2678 109 70 5 chr21 33315581 33315983 -11591587 + MSTA LTR MaLR 1 428 0 798 271 129 32 chr21 33315983 33316130 -11591440 - MLT1I LTR MaLR -202 207 1 339 25 0 0 chr21 33316447 33316487 -11591083 + (CA)n Simple_repeat Simple_repeat 1 40 0 1775 201 15 12 chr21 33317023 33317366 -11590204 - MER2 DNA MER2_type 0 344 1 356 249 70 88 chr21 33317734 33318120 -11589450 + L1ME3A LINE L1 4442 4820 -1326 2109 263 89 18 chr21 33318152 33319278 -11588292 + L1ME3A LINE L1 4879 6099 -71 29 0 0 0 chr21 33319690 33319719 -11587851 + AT_rich Low_complexity Low_complexity 1 29 0 260 313 14 49 chr21 33319813 33319957 -11587613 - MIR SINE MIR -64 198 60 207 0 0 0 chr21 33320825 33320848 -11586722 + (T)n Simple_repeat Simple_repeat 1 23 0 596 287 128 44 chr21 33321147 33321530 -11586040 - MLT1L LTR MaLR -70 545 131 221 253 38 0 chr21 33321749 33321828 -11585742 + (TGAA)n Simple_repeat Simple_repeat 1 82 0 3540 228 53 12 chr21 33322124 33323066 -11584504 - L1ME1 LINE L1 -5 6161 5188 366 23 0 0 chr21 33323067 33323110 -11584460 + (TC)n Simple_repeat Simple_repeat 2 44 0 848 207 0 0 chr21 33323113 33323258 -11584312 - AluJo SINE Alu -30 282 138 303 28 0 0 chr21 33323395 33323431 -11584139 + (TTTAA)n Simple_repeat Simple_repeat 5 40 0 2710 81 14 76 chr21 33323432 33323866 -11583704 - L1PA10 LINE L1 -20 6148 5742 767 220 8 0 chr21 33323869 33324001 -11583569 - AluJo SINE Alu -170 142 10 235 209 0 0 chr21 33324912 33324955 -11582615 + (CA)n Simple_repeat Simple_repeat 2 44 0 1800 176 48 20 chr21 33324991 33325093 -11582477 + MLT1A1 LTR MaLR 1 99 -266 2769 138 49 0 chr21 33325093 33325499 -11582071 - MSTB LTR MaLR 0 426 1 1800 176 48 20 chr21 33325499 33325749 -11581821 + MLT1A1 LTR MaLR 99 363 -2 211 342 154 27 chr21 33325864 33326013 -11581557 + L2 LINE L2 3102 3269 -3 311 83 83 0 chr21 33326349 33326397 -11581173 + MER66B LTR ERV1 295 346 -140 606 282 46 29 chr21 33327655 33327900 -11579670 - MIR SINE MIR 0 262 6 21 0 0 0 chr21 33328607 33328628 -11578942 + AT_rich Low_complexity Low_complexity 1 21 0 205 191 24 0 chr21 33329388 33329430 -11578140 + CT-rich Low_complexity Low_complexity 1 43 0 192 322 98 5 chr21 33330984 33331198 -11576372 + L2 LINE L2 1469 1702 -1612 22 35 0 0 chr21 33333901 33333930 -11573640 + AT_rich Low_complexity Low_complexity 1 29 0 3402 99 2 0 chr21 33334019 33334464 -11573106 - L1PA13 LINE L1 -19 6144 5699 803 124 16 0 chr21 33334465 33334586 -11572984 + L1PA13 LINE L1 5554 5676 -487 186 224 0 0 chr21 33334703 33334752 -11572818 + (TAG)n Simple_repeat Simple_repeat 1 49 0 373 306 16 16 chr21 33334765 33334886 -11572684 - L2 LINE L2 -8 3305 3185 564 257 115 58 chr21 33335081 33335234 -11572336 - MIR SINE MIR -2 260 88 2108 131 0 0 chr21 33335234 33335525 -11572045 - AluSx SINE Alu -21 291 1 564 257 115 58 chr21 33335525 33335597 -11571973 - MIR SINE MIR -174 88 22 1694 153 3 51 chr21 33335729 33336042 -11571528 - AluSx SINE Alu -12 300 3 354 74 0 0 chr21 33336816 33336870 -11570700 + (CAGCC)n Simple_repeat Simple_repeat 5 58 0 2245 102 3 13 chr21 33337182 33337495 -11570075 - AluSx SINE Alu -2 310 1 211 162 162 117 chr21 33337860 33337971 -11569599 + MIR SINE MIR 25 140 -122 274 258 194 0 chr21 33337974 33338067 -11569503 - L2 LINE L2 0 3272 3162 239 287 30 10 chr21 33338067 33338168 -11569402 + L1MEd LINE L1 1070 1172 -5033 323 307 144 34 chr21 33338319 33338692 -11568878 + L1MEd LINE L1 1410 1648 -928 217 309 59 0 chr21 33338940 33339008 -11568562 + MIR3 SINE MIR 91 162 -46 278 293 14 13 chr21 33339544 33339673 -11567897 - L1ME LINE L1 -276 5845 5714 345 253 66 97 chr21 33340002 33340259 -11567311 - MLT1L LTR MaLR 0 615 263 1860 198 43 55 chr21 33340335 33340804 -11566766 - MLT1C LTR MaLR -4 463 1 276 174 82 0 chr21 33341042 33341140 -11566430 + (TA)n Simple_repeat Simple_repeat 2 107 0 251 203 85 97 chr21 33342275 33342387 -11565183 - MIR SINE MIR -34 174 61 182 364 59 8 chr21 33342912 33343030 -11564540 + MIR3 SINE MIR 60 183 -25 1966 207 42 8 chr21 33343038 33343415 -11564155 + MLT1B LTR MaLR 1 390 0 190 279 81 35 chr21 33343473 33343559 -11564011 - MIR SINE MIR -40 222 133 424 271 94 28 chr21 33344089 33344270 -11563300 + L1ME4a LINE L1 5508 5700 -421 304 291 5 96 chr21 33344559 33344701 -11562869 + L1ME4a LINE L1 5936 6057 -64 2318 95 23 0 chr21 33344701 33345005 -11562565 - AluY SINE Alu 0 311 1 304 291 5 96 chr21 33345005 33345061 -11562509 + L1ME4a LINE L1 6057 6116 -5 2414 210 5 63 chr21 33345429 33345981 -11561589 - MLT2B1 LTR ERVL 0 520 1 233 178 0 0 chr21 33346359 33346404 -11561166 - LTR66 LTR ERVL -172 438 394 294 143 0 0 chr21 33346404 33346453 -11561117 + (TA)n Simple_repeat Simple_repeat 1 49 0 245 282 0 0 chr21 33346456 33346534 -11561036 + L1MC4 LINE L1 6614 6691 -1351 602 201 195 7 chr21 33347080 33347234 -11560336 + MER20 DNA MER1_type 37 219 0 644 281 16 42 chr21 33347718 33347858 -11559712 + MIR SINE MIR 12 147 -115 2137 139 0 0 chr21 33347858 33348168 -11559402 + AluSg SINE Alu 1 310 0 644 281 16 42 chr21 33348168 33348219 -11559351 + MIR SINE MIR 147 198 -64 951 218 124 0 chr21 33348219 33348421 -11559149 - MER8 DNA MER2_type 0 239 13 27 0 0 0 chr21 33348452 33348479 -11559091 + AT_rich Low_complexity Low_complexity 1 27 0 192 382 46 8 chr21 33349761 33349892 -11557678 - MIR3 SINE MIR -62 146 11 969 189 11 5 chr21 33350336 33350526 -11557044 + L1PB1 LINE L1 3 193 -6670 * 14662 182 31 20 chr21 33350513 33354684 -11552886 + L1PB1 LINE L1 620 5051 -1816 2456 119 32 19 chr21 33354684 33355054 -11552516 - THE1C LTR MaLR 0 375 1 14662 182 31 20 chr21 33355054 33356889 -11550681 + L1PB1 LINE L1 5051 6864 -3 1802 186 28 28 chr21 33359243 33359604 -11547966 - MLT1A1 LTR MaLR 0 365 5 221 267 9 48 chr21 33361893 33361998 -11545572 + (TCCA)n Simple_repeat Simple_repeat 4 104 0 2288 102 0 7 chr21 33362224 33362527 -11545043 + AluSx SINE Alu 1 301 -11 974 116 7 13 chr21 33362810 33362965 -11544605 + AluSg/x SINE Alu 156 309 -3 348 248 29 29 chr21 33363304 33363409 -11544161 + MIR SINE MIR 45 149 -113 321 182 0 0 chr21 33363478 33363533 -11544037 + MER81 DNA DNA 4 58 -56 417 20 0 0 chr21 33364220 33364270 -11543300 + (TG)n Simple_repeat Simple_repeat 2 51 0 209 186 0 0 chr21 33364562 33364605 -11542965 + (TG)n Simple_repeat Simple_repeat 2 44 0 521 270 176 0 chr21 33364697 33364856 -11542714 + MIR SINE MIR 76 262 0 1199 210 89 95 chr21 33367064 33367612 -11539958 + MER77 LTR ERV1 55 599 -6 309 51 0 0 chr21 33367917 33367956 -11539614 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2265 174 48 41 chr21 33368011 33368444 -11539126 - MLT1C LTR MaLR -2 465 27 297 0 0 0 chr21 33368444 33368477 -11539093 + (TG)n Simple_repeat Simple_repeat 2 34 0 2265 174 48 41 chr21 33368477 33368504 -11539066 - MLT1C LTR MaLR -440 27 2 224 248 75 60 chr21 33368547 33368680 -11538890 + MIR SINE MIR 109 243 -19 2388 80 3 7 chr21 33370241 33370543 -11537027 - AluY SINE Alu -9 302 2 466 132 105 44 chr21 33370712 33370826 -11536744 + MER53 DNA DNA 63 183 -6 300 281 88 0 chr21 33371067 33371181 -11536389 + MIR SINE MIR 78 201 -61 2294 91 7 0 chr21 33371334 33371631 -11535939 - AluSx SINE Alu -13 299 1 224 299 21 90 chr21 33372159 33372303 -11535267 - MIR SINE MIR -22 240 107 304 333 164 6 chr21 33372306 33372471 -11535099 + MIR3 SINE MIR 8 198 -10 789 204 29 6 chr21 33372791 33372963 -11534607 - MER5B DNA MER1_type 0 178 3 33 0 0 58 chr21 33373176 33373228 -11534342 + AT_rich Low_complexity Low_complexity 1 49 0 825 287 83 51 chr21 33373506 33373695 -11533875 + L1ME4a LINE L1 5402 5583 -538 2244 117 7 0 chr21 33373695 33374002 -11533568 - AluSx SINE Alu -3 309 1 825 287 83 51 chr21 33374002 33374304 -11533266 + L1ME4a LINE L1 5583 5909 -212 367 246 8 82 chr21 33374384 33374506 -11533064 + MER81 DNA DNA 1 113 -1 203 211 0 77 chr21 33374511 33374563 -11533007 + MIR SINE MIR 69 116 -92 31 0 0 0 chr21 33374671 33374702 -11532868 + AT_rich Low_complexity Low_complexity 1 31 0 202 370 93 0 chr21 33376821 33376983 -11530587 + MIR SINE MIR 60 236 -26 183 42 0 0 chr21 33379668 33379692 -11527878 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1721 208 42 94 chr21 33380360 33380926 -11526644 + L1MD2 LINE L1 5813 6357 -2 548 271 106 76 chr21 33381998 33382869 -11524701 + L1MEc LINE L1 1166 2074 -4647 2265 128 0 0 chr21 33382971 33383275 -11524295 + AluSx SINE Alu 3 306 -6 324 239 52 52 chr21 33383477 33383611 -11523959 + L1MEc LINE L1 2400 2533 -4007 756 280 14 14 chr21 33383688 33383906 -11523664 - MIR SINE MIR -42 220 3 276 314 36 14 chr21 33384075 33384215 -11523355 + L1ME LINE L1 5586 5728 -393 201 182 0 0 chr21 33384301 33384334 -11523236 + (TA)n Simple_repeat Simple_repeat 1 33 0 2352 77 0 3 chr21 33384632 33384930 -11522640 + AluY SINE Alu 5 301 -10 868 195 35 102 chr21 33385702 33385846 -11521724 + Charlie4a DNA MER1_type 46 198 -1763 1731 171 28 3 chr21 33385846 33386133 -11521437 + AluJb SINE Alu 1 294 -18 868 195 35 102 chr21 33386133 33386362 -11521208 + Charlie4a DNA MER1_type 198 373 -135 1227 211 27 40 chr21 33386389 33386688 -11520882 - MLT2D LTR ERVL -119 295 1 8242 152 39 19 chr21 33386688 33387517 -11520053 - ERVL-D LTR ERVL -7 5757 4887 2370 91 34 88 chr21 33387517 33387901 -11519669 + THE1B LTR MaLR 1 363 -1 8242 152 39 19 chr21 33387901 33388472 -11519098 - ERVL-D LTR ERVL -877 4887 4329 340 162 126 63 chr21 33388490 33388601 -11518969 + Charlie4a DNA MER1_type 277 394 -114 2113 128 0 31 chr21 33388616 33388962 -11518608 + AluSx SINE Alu 3 312 0 190 343 134 23 chr21 33389673 33389889 -11517681 - L2 LINE L2 -389 2925 2686 289 321 55 57 chr21 33389934 33390317 -11517253 - L2 LINE L2 -898 2416 2035 2470 77 3 0 chr21 33390425 33390764 -11516806 + AluSp SINE Alu 1 340 0 482 278 114 65 chr21 33391394 33391572 -11515998 + L2 LINE L2 2638 2806 -507 1088 170 13 57 chr21 33391572 33391801 -11515769 + MER20 DNA MER1_type 1 219 0 482 278 114 65 chr21 33391801 33392187 -11515383 + L2 LINE L2 2806 3226 -87 203 138 0 0 chr21 33392969 33392998 -11514572 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 22 0 0 0 chr21 33393275 33393297 -11514273 + AT_rich Low_complexity Low_complexity 1 22 0 298 304 13 0 chr21 33393765 33393844 -11513726 - L2 LINE L2 -2 3311 3232 184 320 128 16 chr21 33393986 33394111 -11513459 + MIR SINE MIR 3 141 -121 3523 181 24 2 chr21 33394158 33394789 -11512781 + L1MB5 LINE L1 5530 6174 0 2873 167 121 3 chr21 33394930 33395510 -11512060 - L1MA9 LINE L1 -10 6302 5655 377 269 90 22 chr21 33395527 33395661 -11511909 - MLT1L LTR MaLR -333 282 140 219 255 58 138 chr21 33395919 33396107 -11511463 + MIR SINE MIR 14 186 -76 397 221 0 16 chr21 33396285 33396407 -11511163 + GA-rich Low_complexity Low_complexity 1 120 0 814 241 47 0 chr21 33396633 33396803 -11510767 - MER45A DNA AcHobo 0 178 1 1036 309 60 5 chr21 33397452 33397834 -11509736 - LTR16C LTR ERVL 0 491 89 1546 191 43 80 chr21 33397990 33398389 -11509181 - MLT1B LTR MaLR -2 388 5 430 308 102 41 chr21 33398717 33398983 -11508587 + L3b LINE CR1 1105 1386 -197 786 210 134 0 chr21 33399203 33399389 -11508181 - MER20 DNA MER1_type -6 213 3 214 293 0 37 chr21 33399397 33399479 -11508091 - L3b LINE CR1 -223 1360 1282 216 245 38 0 chr21 33399502 33399555 -11508015 - L2 LINE L2 -86 3186 3132 1187 203 28 5 chr21 33399768 33399985 -11507585 + MER58A DNA MER1_type 3 224 0 246 373 107 6 chr21 33400076 33400245 -11507325 - MIR SINE MIR -27 235 50 323 318 37 47 chr21 33400998 33401061 -11506509 - MIR SINE MIR -50 212 150 2671 141 69 0 chr21 33401061 33401481 -11506089 + LTR47A LTR ERVL 1 449 -3 323 318 37 47 chr21 33401481 33401596 -11505974 - MIR SINE MIR -112 150 31 385 247 22 0 chr21 33402250 33402339 -11505231 + MLT1C LTR MaLR 1 91 -376 1124 231 44 41 chr21 33402341 33402661 -11504909 + MLT1A2 LTR MaLR 3 323 -51 348 138 238 12 chr21 33402680 33402760 -11504810 - L2 LINE L2 -4 3309 3212 616 290 83 28 chr21 33403130 33403382 -11504188 - L3 LINE CR1 -316 1261 996 195 69 0 0 chr21 33403415 33403444 -11504126 + (T)n Simple_repeat Simple_repeat 1 29 0 719 207 62 0 chr21 33403810 33403989 -11503581 + L1MEd LINE L1 5 194 -5925 2695 54 16 0 chr21 33404154 33404470 -11503100 - L1PA3 LINE L1 0 6155 5835 5409 19 0 0 chr21 33404470 33405173 -11502397 + L1PA3 LINE L1 5163 5865 -290 321 213 0 0 chr21 33405173 33405234 -11502336 + MLT1A2 LTR MaLR 326 386 -4 1138 236 73 41 chr21 33405238 33405607 -11501963 + MLT1C LTR MaLR 87 467 0 1959 189 108 36 chr21 33406549 33406572 -11500998 - MLT1D LTR MaLR 0 505 485 2169 157 33 30 chr21 33406572 33406935 -11500635 - THE1B LTR MaLR 0 364 1 1959 189 108 36 chr21 33406935 33407382 -11500188 - MLT1D LTR MaLR -20 485 1 207 327 121 31 chr21 33407848 33408105 -11499465 + L2 LINE L2 2064 2343 -971 281 282 129 35 chr21 33408196 33408366 -11499204 + LTR33 LTR ERVL 292 477 -44 181 0 0 65 chr21 33408854 33408885 -11498685 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 426 293 19 25 chr21 33409602 33409759 -11497811 + L1ME2 LINE L1 5979 6134 -30 282 242 43 126 chr21 33409815 33410046 -11497524 + L1MC4 LINE L1 7826 8037 -5 1644 131 54 13 chr21 33410607 33410905 -11496665 - L1MA9 LINE L1 0 6312 6003 494 195 70 47 chr21 33411253 33411381 -11496189 + MIR SINE MIR 77 207 -55 22 0 0 0 chr21 33411794 33411816 -11495754 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr21 33412844 33412864 -11494706 + (TTA)n Simple_repeat Simple_repeat 3 22 0 14295 86 13 1 chr21 33412864 33415491 -11492079 - L1PA7 LINE L1 -18 6136 3486 253 224 24 71 chr21 33415837 33415922 -11491648 - MLT1I LTR MaLR -21 388 308 976 246 62 12 chr21 33416427 33416667 -11490903 - MIR SINE MIR -1 261 10 638 292 38 10 chr21 33416796 33416899 -11490671 - MER58C DNA MER1_type -2205 215 116 2092 126 7 0 chr21 33416899 33417192 -11490378 - AluSx SINE Alu -17 295 1 638 292 38 10 chr21 33417192 33417297 -11490273 - MER58C DNA MER1_type -2304 116 1 622 327 49 0 chr21 33417837 33418060 -11489510 - MIR SINE MIR -28 234 1 252 279 15 0 chr21 33418476 33418544 -11489026 + MIR3 SINE MIR 125 193 -15 1228 36 0 0 chr21 33418861 33419000 -11488570 + L1PA5 LINE L1 6016 6154 0 264 30 0 0 chr21 33419070 33419103 -11488467 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 219 27 0 chr21 33420119 33420192 -11487378 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 739 154 200 15 chr21 33420221 33420351 -11487219 - AluSg/x SINE Alu -17 293 140 231 154 26 0 chr21 33421383 33421422 -11486148 + MLT1L LTR MaLR 252 291 -324 298 276 49 92 chr21 33421576 33421739 -11485831 + MIR SINE MIR 86 241 -21 28 0 0 0 chr21 33422456 33422484 -11485086 + AT_rich Low_complexity Low_complexity 1 28 0 1829 140 41 89 chr21 33423960 33424354 -11483216 - THE1C LTR MaLR 0 375 1 264 170 0 0 chr21 33425723 33425776 -11481794 + (TA)n Simple_repeat Simple_repeat 1 53 0 2258 155 17 37 chr21 33426043 33426449 -11481121 + MSTB1 LTR MaLR 5 402 -30 309 284 32 11 chr21 33426452 33426547 -11481023 - L2 LINE L2 -26 3246 3150 305 293 26 17 chr21 33426618 33426734 -11480836 - L2 LINE L2 0 3313 3197 2552 221 19 56 chr21 33426938 33427509 -11480061 + MER68 LTR ERV1 13 562 0 215 344 30 69 chr21 33427904 33428035 -11479535 - L2 LINE L2 -6 3266 3141 315 0 0 0 chr21 33429095 33429130 -11478440 + (CA)n Simple_repeat Simple_repeat 2 36 0 822 223 0 0 chr21 33429933 33430063 -11477507 - AluJb SINE Alu -42 270 141 1629 169 7 27 chr21 33430070 33430371 -11477199 - AluJo SINE Alu -17 295 1 638 214 75 19 chr21 33431103 33431262 -11476308 - L2 LINE L2 0 3313 3146 207 174 0 43 chr21 33431283 33431329 -11476241 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 316 286 36 0 chr21 33431360 33431472 -11476098 - L2 LINE L2 -189 3124 3009 277 349 47 8 chr21 33431469 33431598 -11475972 + L2 LINE L2 2809 2942 -371 * 243 243 129 0 chr21 33431903 33431973 -11475597 - MIR SINE MIR -62 200 122 300 344 62 0 chr21 33432059 33432187 -11475383 + L2 LINE L2 3178 3313 0 951 233 45 5 chr21 33432281 33432504 -11475066 - MIR SINE MIR 0 262 31 537 193 59 64 chr21 33434553 33434740 -11472830 + MER53 DNA DNA 1 186 -3 214 167 0 0 chr21 33435100 33435136 -11472434 + GA-rich Low_complexity Low_complexity 2 37 0 414 0 0 0 chr21 33435735 33435781 -11471789 + (CA)n Simple_repeat Simple_repeat 2 47 0 810 173 14 9 chr21 33436673 33436890 -11470680 + CT-rich Low_complexity Low_complexity 1 218 0 325 318 59 59 chr21 33440189 33440409 -11467161 + MIR SINE MIR 42 261 -1 319 303 98 8 chr21 33440759 33440881 -11466689 + L2 LINE L2 3181 3313 0 508 259 101 19 chr21 33441056 33441133 -11466437 + MLT1J LTR MaLR 14 83 -428 297 0 0 0 chr21 33441133 33441166 -11466404 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 508 259 101 19 chr21 33441166 33441246 -11466324 + MLT1J LTR MaLR 83 184 -327 350 306 25 51 chr21 33441387 33441583 -11465987 + MLT1J LTR MaLR 229 419 -92 322 310 54 16 chr21 33442965 33443094 -11464476 - L3b LINE CR1 -223 1360 1227 541 266 159 79 chr21 33443592 33443995 -11463575 + L3 LINE CR1 942 1376 -201 186 331 30 68 chr21 33444245 33444378 -11463192 - L2 LINE L2 -219 3053 2926 207 0 0 0 chr21 33444871 33444894 -11462676 + (TA)n Simple_repeat Simple_repeat 2 24 0 1998 139 0 3 chr21 33446672 33446967 -11460603 - AluSq SINE Alu -19 294 1 255 241 76 13 chr21 33448746 33448825 -11458745 + L1MEd LINE L1 3 86 -6033 1479 278 65 71 chr21 33449003 33450044 -11457526 + L1MEd LINE L1 328 1411 -4870 2929 57 3 16 chr21 33450105 33450474 -11457096 + L1PA8 LINE L1 5808 6171 -1 395 291 87 12 chr21 33450746 33450918 -11456652 + L1MEd LINE L1 1514 1698 -4612 209 245 28 94 chr21 33451171 33451277 -11456293 - L2 LINE L2 -32 3281 3183 310 269 67 82 chr21 33452125 33452259 -11455311 + L2 LINE L2 3141 3272 0 225 0 0 0 chr21 33453444 33453469 -11454101 + (T)n Simple_repeat Simple_repeat 1 25 0 553 235 52 31 chr21 33453891 33454083 -11453487 - MIR SINE MIR -26 236 42 2235 113 0 28 chr21 33454609 33454927 -11452643 + AluSg SINE Alu 1 309 -1 390 332 86 39 chr21 33455243 33455650 -11451920 + L1MC4a LINE L1 5508 5933 -1875 624 286 25 45 chr21 33455866 33456111 -11451459 - MIR SINE MIR -3 259 20 335 295 0 13 chr21 33457457 33457535 -11450035 - MER91A DNA MER1_type -119 77 1 505 289 75 40 chr21 33457561 33457789 -11449781 - MIR SINE MIR -20 242 7 2326 105 3 0 chr21 33458246 33458552 -11449018 + AluSp SINE Alu 1 307 -6 280 227 25 25 chr21 33458558 33458721 -11448849 + (TA)n Simple_repeat Simple_repeat 2 164 0 202 210 16 48 chr21 33458685 33458809 -11448761 + (TTTA)n Simple_repeat Simple_repeat 3 122 0 * 188 364 41 0 chr21 33459107 33459228 -11448342 - L2 LINE L2 -1 3271 3146 526 209 236 0 chr21 33459236 33459384 -11448186 + MER97b DNA MER1_type? 2 184 -869 991 187 15 39 chr21 33459394 33459597 -11447973 + MER58A DNA MER1_type 27 224 0 * 1730 207 86 45 chr21 33459597 33460106 -11447464 + MER97a DNA MER1_type? 197 726 -168 225 154 15 138 chr21 33460119 33460152 -11447418 + MER97c DNA MER1_type? 990 1013 -77 2282 107 0 0 chr21 33460152 33460450 -11447120 + AluSx SINE Alu 1 298 -14 225 154 15 138 chr21 33460450 33460481 -11447089 + MER97c DNA MER1_type? 1013 1046 -44 443 304 65 12 chr21 33461178 33461346 -11446224 + MER5A DNA MER1_type 8 184 -5 373 238 70 63 chr21 33461665 33461808 -11445762 - MIR SINE MIR -118 144 1 206 273 36 0 chr21 33462367 33462422 -11445148 + CT-rich Low_complexity Low_complexity 3 59 0 202 380 0 0 chr21 33462424 33462495 -11445075 - L2 LINE L2 -1 3271 3201 345 82 0 0 chr21 33462520 33462569 -11445001 + (TG)n Simple_repeat Simple_repeat 2 50 0 242 262 24 12 chr21 33465543 33465627 -11441943 + L1ME LINE L1 5620 5704 -466 219 69 0 0 chr21 33466068 33466097 -11441473 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1108 219 50 99 chr21 33466118 33466492 -11441078 + MSTD LTR MaLR 1 357 -39 1874 114 20 61 chr21 33466492 33466676 -11440894 - AluSq SINE Alu 0 314 146 189 0 0 0 chr21 33466676 33466697 -11440873 + (TG)n Simple_repeat Simple_repeat 2 22 0 1874 114 20 61 chr21 33466697 33466838 -11440732 - AluSq SINE Alu -168 146 1 1108 219 50 99 chr21 33466838 33466877 -11440693 + MSTD LTR MaLR 357 396 0 1798 140 150 0 chr21 33467146 33467439 -11440131 + MER1B DNA MER1_type 1 337 0 187 383 42 47 chr21 33467688 33467902 -11439668 + L2 LINE L2 3096 3308 -5 23 0 0 0 chr21 33469094 33469117 -11438453 + AT_rich Low_complexity Low_complexity 1 23 0 1411 127 73 20 chr21 33470506 33470751 -11436819 - L1MB7 LINE L1 0 6184 5927 23 0 0 0 chr21 33471186 33471209 -11436361 + AT_rich Low_complexity Low_complexity 1 23 0 43 20 0 0 chr21 33471221 33471271 -11436299 + AT_rich Low_complexity Low_complexity 1 50 0 308 266 84 78 chr21 33471653 33471807 -11435763 - LTR16C LTR ERVL 0 491 337 731 257 80 35 chr21 33472525 33472926 -11434644 + L1ME4a LINE L1 5525 5943 -178 355 307 7 21 chr21 33474612 33474752 -11432818 - MER5B DNA MER1_type -40 138 1 496 235 71 93 chr21 33475877 33476060 -11431510 + MIR SINE MIR 65 243 -19 1925 180 27 121 chr21 33476801 33477357 -11430213 + MLT1D LTR MaLR 1 504 -1 324 0 0 0 chr21 33477422 33477458 -11430112 + (TAA)n Simple_repeat Simple_repeat 1 36 0 219 257 96 103 chr21 33477507 33477643 -11429927 - L2 LINE L2 -2 3270 3136 719 306 19 15 chr21 33477705 33477911 -11429659 - MIR SINE MIR -52 210 4 788 251 86 104 chr21 33478110 33478668 -11428902 - MLT1H LTR MaLR -1 548 1 434 239 0 11 chr21 33478728 33478820 -11428750 + MER2 DNA MER2_type 2 92 -253 426 240 41 92 chr21 33479332 33479528 -11428042 - L2 LINE L2 0 3313 3128 2758 104 28 3 chr21 33480299 33480654 -11426916 + THE1B LTR MaLR 1 364 0 1612 166 64 41 chr21 33480654 33480997 -11426573 + MLT1A1 LTR MaLR 14 364 -1 289 309 83 24 chr21 33481100 33481268 -11426302 + MER5B DNA MER1_type 1 178 0 441 293 116 0 chr21 33481462 33481609 -11425961 - MIR SINE MIR -70 192 29 228 331 39 35 chr21 33482132 33482302 -11425268 - MIR3 SINE MIR -27 181 10 412 318 28 40 chr21 33482796 33482972 -11424598 - MIR SINE MIR -1 261 88 755 178 115 52 chr21 33482974 33483148 -11424422 + MER5A DNA MER1_type 3 187 -2 245 235 49 0 chr21 33483207 33483284 -11424286 - MIR SINE MIR -109 99 18 285 75 0 0 chr21 33484595 33484635 -11422935 + (TG)n Simple_repeat Simple_repeat 2 41 0 215 267 219 29 chr21 33485592 33485697 -11421873 - L2 LINE L2 0 3272 3148 311 288 58 98 chr21 33488955 33489160 -11418410 - L2 LINE L2 -4 3309 3113 368 328 50 46 chr21 33489325 33489584 -11417986 - L2 LINE L2 -438 2876 2617 2256 257 95 45 chr21 33489773 33490914 -11416656 + L1ME LINE L1 4 1367 -4894 1816 170 33 13 chr21 33490914 33491220 -11416350 + AluJb SINE Alu 1 312 0 2256 257 95 45 chr21 33491220 33491859 -11415711 + L1ME LINE L1 1367 1972 -4289 702 331 58 19 chr21 33492414 33492773 -11414797 - L3 LINE CR1 -547 1030 658 341 290 103 9 chr21 33494591 33494718 -11412852 + MIR SINE MIR 51 188 -71 1203 191 57 87 chr21 33494869 33494950 -11412620 + MLT1B LTR MaLR 1 83 -307 2316 87 0 29 chr21 33494950 33495261 -11412309 - AluY SINE Alu -7 304 3 1203 191 57 87 chr21 33495261 33495581 -11411989 + MLT1B LTR MaLR 83 390 0 2096 135 0 0 chr21 33495714 33496017 -11411553 + AluSx SINE Alu 1 303 -9 362 186 62 53 chr21 33497010 33497123 -11410447 + MIR SINE MIR 132 245 -17 2283 93 7 0 chr21 33497355 33497655 -11409915 - AluSq SINE Alu -11 302 1 956 256 36 11 chr21 33498325 33498602 -11408968 - MLT2D LTR ERVL -48 366 83 13787 37 1 4 chr21 33499855 33502313 -11405257 + L1PA5 LINE L1 3687 6151 -3 274 292 27 0 chr21 33502332 33502428 -11405142 - MIR SINE MIR -93 115 15 237 347 7 32 chr21 33504487 33504678 -11402892 + MIR SINE MIR 10 194 -62 * 917 273 155 28 chr21 33504675 33505459 -11402111 + L2 LINE L2 2433 3312 -1 811 270 0 6 chr21 33505516 33505690 -11401880 + MER5B DNA MER1_type 6 178 0 184 347 0 0 chr21 33505917 33505966 -11401604 - L2 LINE L2 -23 3290 3242 5271 190 49 40 chr21 33506282 33507515 -11400055 - Charlie1a DNA MER1_type -1311 1450 201 2310 110 3 0 chr21 33507515 33507816 -11399754 - AluSx SINE Alu -10 302 1 5271 190 49 40 chr21 33507816 33508019 -11399551 - Charlie1a DNA MER1_type -2560 201 1 1570 171 4 19 chr21 33508198 33508462 -11399108 + AluJo SINE Alu 1 260 -52 2372 247 38 23 chr21 33508650 33509471 -11398099 + L1M4 LINE L1 4028 4860 -1286 2173 104 0 0 chr21 33509589 33509904 -11397666 + AluY SINE Alu 3 317 0 1188 193 29 4 chr21 33509912 33510186 -11397384 - L1MB7 LINE L1 -28 6156 5876 283 194 32 0 chr21 33510567 33510629 -11396941 - MIR SINE MIR -115 147 84 24 32 0 0 chr21 33510873 33510904 -11396666 + AT_rich Low_complexity Low_complexity 1 31 0 218 370 0 0 chr21 33510976 33511068 -11396502 - MIR SINE MIR -13 249 158 2347 96 7 0 chr21 33511149 33511452 -11396118 - AluSx SINE Alu -7 305 1 1549 202 94 25 chr21 33511727 33512162 -11395408 + MLT1C LTR MaLR 2 466 -1 399 41 0 0 chr21 33512495 33512544 -11395026 + (TG)n Simple_repeat Simple_repeat 2 50 0 2054 132 10 3 chr21 33512595 33512932 -11394638 + AluSx SINE Alu 1 339 0 195 307 189 42 chr21 33513921 33514159 -11393411 + L2 LINE L2 2147 2419 -895 477 300 71 44 chr21 33514282 33514678 -11392892 + L2 LINE L2 2638 3042 -230 1561 233 42 61 chr21 33514789 33515289 -11392281 - L1ME3 LINE L1 -2 6160 5671 2416 49 0 16 chr21 33515289 33515593 -11391977 + AluY SINE Alu 13 311 0 1561 233 42 61 chr21 33515593 33515663 -11391907 - L1ME3 LINE L1 -491 5671 5601 481 295 25 0 chr21 33515704 33515826 -11391744 + L2 LINE L2 3139 3263 -9 1897 119 8 0 chr21 33515855 33516123 -11391447 - AluSq SINE Alu -11 302 33 2155 219 41 64 chr21 33516843 33517019 -11390551 + MLT1E LTR MaLR 1 180 -413 2092 129 0 3 chr21 33517019 33517335 -11390235 + AluSc SINE Alu 1 309 0 2155 219 41 64 chr21 33517335 33517765 -11389805 + MLT1E LTR MaLR 180 593 0 2057 135 10 21 chr21 33517809 33518309 -11389261 - L1MA6 LINE L1 -663 5628 5135 3813 162 13 1 chr21 33518309 33518962 -11388608 + L1MA6 LINE L1 5619 6300 0 21 71 0 0 chr21 33519268 33519310 -11388260 + AT_rich Low_complexity Low_complexity 1 42 0 404 328 84 38 chr21 33520485 33520747 -11386823 + L1ME4a LINE L1 5574 5847 -274 465 209 194 0 chr21 33521240 33521379 -11386191 + MLT1I LTR MaLR 1 166 -243 324 223 97 0 chr21 33521466 33521569 -11386001 + MLT1I LTR MaLR 297 409 0 824 288 26 23 chr21 33521910 33522254 -11385316 + L1MD3 LINE L1 6772 7116 -879 251 214 10 82 chr21 33522254 33522352 -11385218 + MLT1F1 LTR MaLR 35 125 -442 1934 226 24 48 chr21 33522387 33522970 -11384600 + L1MD3 LINE L1 7422 7990 -5 421 295 87 11 chr21 33525414 33525597 -11381973 - MIR SINE MIR 0 262 66 1559 211 107 23 chr21 33525848 33526279 -11381291 + MLT2B1 LTR ERVL 8 474 -46 279 179 0 0 chr21 33526282 33526349 -11381221 + (CA)n Simple_repeat Simple_repeat 2 68 0 246 120 78 24 chr21 33526349 33526407 -11381163 + MLT2C2 LTR ERVL 412 464 0 2632 95 17 0 chr21 33526807 33527165 -11380405 + THE1B LTR MaLR 1 364 0 261 0 0 0 chr21 33527375 33527404 -11380166 + (CA)n Simple_repeat Simple_repeat 1 29 0 1216 186 150 43 chr21 33527408 33527735 -11379835 + MLT1A1 LTR MaLR 4 365 0 195 100 0 0 chr21 33527786 33527816 -11379754 + (CA)n Simple_repeat Simple_repeat 1 30 0 316 296 0 0 chr21 33527853 33527951 -11379619 + (CA)n Simple_repeat Simple_repeat 2 99 0 248 269 11 65 chr21 33528758 33528851 -11378719 + MIR SINE MIR 2 89 -173 1302 231 34 47 chr21 33528851 33529297 -11378273 + MLT1C LTR MaLR 1 440 -27 279 320 7 75 chr21 33529366 33529513 -11378057 + MIR SINE MIR 126 262 0 211 315 41 0 chr21 33530207 33530280 -11377290 + MIR SINE MIR 114 189 -73 939 273 71 18 chr21 33530450 33530962 -11376608 + MLT1F1 LTR MaLR 1 567 0 2525 75 0 0 chr21 33531500 33531808 -11375762 + AluY SINE Alu 1 308 -3 26 0 0 0 chr21 33531980 33532006 -11375564 + AT_rich Low_complexity Low_complexity 1 26 0 2171 123 41 16 chr21 33532402 33532768 -11374802 + THE1C LTR MaLR 1 375 0 2430 111 5 16 chr21 33533411 33533790 -11373780 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr21 33534658 33534685 -11372885 + AT_rich Low_complexity Low_complexity 1 27 0 238 218 30 20 chr21 33534750 33534851 -11372719 + (TA)n Simple_repeat Simple_repeat 2 103 0 254 417 29 7 chr21 33534922 33535061 -11372509 + L2 LINE L2 3117 3258 -14 267 31 0 0 chr21 33535190 33535222 -11372348 + (TG)n Simple_repeat Simple_repeat 1 32 0 1045 205 83 144 chr21 33535563 33536153 -11371417 - MLT1H1 LTR MaLR -1 554 1 2189 115 20 0 chr21 33537191 33537487 -11370083 + AluSx SINE Alu 1 302 -10 294 106 0 0 chr21 33538065 33538112 -11369458 + (TG)n Simple_repeat Simple_repeat 1 47 0 2018 217 32 34 chr21 33538448 33538946 -11368624 - MLT1D LTR MaLR -8 497 1 353 275 90 69 chr21 33538946 33539135 -11368435 + MLT1J2 LTR MaLR 253 445 -5 416 311 117 0 chr21 33539655 33539851 -11367719 + MIR SINE MIR 20 238 -24 2538 185 114 119 chr21 33540669 33541238 -11366332 - L1MD3 LINE L1 0 7990 7420 339 171 20 58 chr21 33541238 33541345 -11366225 - MLT1F1 LTR MaLR -442 125 47 2538 185 114 119 chr21 33541345 33541693 -11365877 - L1MD3 LINE L1 -570 7420 6767 646 225 14 7 chr21 33542080 33542218 -11365352 + MLT2B1 LTR ERVL 59 197 -323 419 216 18 27 chr21 33542198 33542309 -11365261 - MLT1H LTR MaLR -42 507 398 * 453 256 55 63 chr21 33542678 33542932 -11364638 - MLT1H LTR MaLR -42 507 256 196 324 73 0 chr21 33542991 33543059 -11364511 + MIR SINE MIR 48 120 -142 202 234 0 0 chr21 33543140 33543187 -11364383 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1058 259 54 51 chr21 33543200 33543570 -11364000 + MLT1J2 LTR MaLR 80 450 0 2291 68 37 10 chr21 33544006 33544301 -11363269 + AluY SINE Alu 1 303 -8 1254 182 4 13 chr21 33544513 33544738 -11362832 - L1MC1 LINE L1 0 6333 6111 2362 73 0 13 chr21 33545346 33545646 -11361924 + L1PA8 LINE L1 5870 6165 -7 235 279 0 0 chr21 33546369 33546430 -11361140 - MIR SINE MIR -106 156 96 1129 196 10 5 chr21 33548762 33548966 -11358604 - MER3 DNA MER1_type -4 205 1 249 302 23 12 chr21 33548968 33549054 -11358516 + L2 LINE L2 3191 3277 -36 540 308 123 14 chr21 33549142 33549418 -11358152 - L2 LINE L2 0 3313 3008 203 279 49 0 chr21 33549434 33549495 -11358075 + L2 LINE L2 3205 3268 -4 373 291 43 67 chr21 33549499 33549885 -11357685 - L2 LINE L2 -270 3002 2548 186 259 69 0 chr21 33550274 33550332 -11357238 + L2 LINE L2 3251 3312 -1 253 324 148 0 chr21 33550634 33550742 -11356828 + L2 LINE L2 3149 3272 0 275 304 10 20 chr21 33553098 33553200 -11354370 - L2 LINE L2 -239 3033 2933 582 263 26 42 chr21 33553300 33553490 -11354080 - MIR SINE MIR -55 207 21 728 227 13 76 chr21 33553641 33553866 -11353704 + MER20 DNA MER1_type 3 213 -6 1554 240 48 5 chr21 33558039 33558451 -11349119 + L1MB7 LINE L1 5739 6168 -16 479 188 0 0 chr21 33559066 33559151 -11348419 - L2 LINE L2 -2 3270 3186 370 278 42 78 chr21 33559432 33559623 -11347947 + MLT1J2 LTR MaLR 267 450 0 21 0 0 0 chr21 33560361 33560382 -11347188 + AT_rich Low_complexity Low_complexity 1 21 0 480 170 63 23 chr21 33561420 33561566 -11346004 - L1ME3A LINE L1 -199 5963 5813 2376 161 19 40 chr21 33561868 33562291 -11345279 + MLT2D LTR ERVL 1 414 0 301 265 83 23 chr21 33562294 33562426 -11345144 - MER117 DNA MER1_type -31 166 27 1266 164 5 27 chr21 33562448 33562668 -11344902 + MER20 DNA MER1_type 1 215 -4 573 255 162 15 chr21 33564977 33565181 -11342389 - MIR SINE MIR -10 252 19 499 294 69 63 chr21 33565334 33565667 -11341903 - L2 LINE L2 -8 3305 2971 26 30 0 0 chr21 33565668 33565701 -11341869 + AT_rich Low_complexity Low_complexity 1 33 0 1584 205 26 98 chr21 33566366 33566864 -11340706 + MLT1C LTR MaLR 6 467 0 1684 109 11 34 chr21 33566967 33567255 -11340315 - AluSg SINE Alu 0 310 26 331 264 75 23 chr21 33567455 33567629 -11339941 - MER20B DNA MER1_type -600 183 1 662 134 42 170 chr21 33569106 33569263 -11338307 - L1PA16 LINE L1 -275 5876 5794 186 43 0 0 chr21 33569263 33569286 -11338284 + (TG)n Simple_repeat Simple_repeat 2 24 0 662 134 42 170 chr21 33569286 33569399 -11338171 - L1PA16 LINE L1 -357 5794 5668 * 1146 187 109 42 chr21 33569396 33569680 -11337890 + L1PA16 LINE L1 5859 6161 -5 275 342 46 0 chr21 33570090 33570242 -11337328 + Charlie8 DNA MER1_type 35 193 -2224 233 290 30 20 chr21 33571039 33571139 -11336431 + L1ME LINE L1 5583 5683 -438 209 188 62 36 chr21 33571146 33571258 -11336312 + (TATAA)n Simple_repeat Simple_repeat 4 118 0 896 230 74 7 chr21 33571489 33571923 -11335647 - MLT1D LTR MaLR 0 505 13 1070 254 89 72 chr21 33572987 33573515 -11334055 - MER34 LTR ERV1 -5 537 1 1620 238 70 15 chr21 33574558 33575084 -11332486 - MLT1E3 LTR MaLR -5 619 1 335 296 38 65 chr21 33576031 33576217 -11331353 + MIR3 SINE MIR 13 193 -15 995 269 159 22 chr21 33576838 33577381 -11330189 + L2 LINE L2 2397 3068 -245 1144 137 10 54 chr21 33577381 33577586 -11329984 - L1PB4 LINE L1 -7 6149 5954 995 269 159 22 chr21 33577586 33577844 -11329726 + L2 LINE L2 3068 3289 -24 390 285 120 6 chr21 33578369 33578527 -11329043 - LTR33 LTR ERVL -344 177 2 855 0 0 0 chr21 33578705 33578800 -11328770 + (CTATT)n Simple_repeat Simple_repeat 3 97 0 285 128 0 0 chr21 33578810 33578849 -11328721 + MER112 DNA MER1_type 182 220 -40 197 354 0 0 chr21 33578869 33578934 -11328636 - MIR3 SINE MIR -52 156 92 1524 217 66 28 chr21 33580640 33581056 -11326514 - L1MD2 LINE L1 -1 7769 6196 1140 263 81 15 chr21 33581346 33581761 -11325809 - MLT1J2 LTR MaLR -4 507 2 1341 203 93 65 chr21 33583506 33583955 -11323615 + MLT1C LTR MaLR 6 467 0 2740 167 14 14 chr21 33584018 33584520 -11323050 - L1MB3 LINE L1 -3 6180 5679 2007 142 90 17 chr21 33584917 33585263 -11322307 + THE1C LTR MaLR 5 375 0 287 251 22 63 chr21 33585400 33585532 -11322038 + MER94 DNA DNA 2 131 -3 252 271 0 0 chr21 33587000 33587059 -11320511 - L2 LINE L2 -3 3310 3252 236 222 0 79 chr21 33587010 33587073 -11320497 - MIR SINE MIR -7 255 198 * 1665 202 11 25 chr21 33587555 33587917 -11319653 + MLT1A2 LTR MaLR 18 374 0 255 213 13 13 chr21 33588270 33588345 -11319225 - MER116 DNA Mariner 0 80 6 228 111 0 0 chr21 33588999 33589035 -11318535 + (CA)n Simple_repeat Simple_repeat 2 37 0 38 0 0 0 chr21 33589156 33589194 -11318376 + AT_rich Low_complexity Low_complexity 1 38 0 1003 196 80 0 chr21 33589399 33589675 -11317895 - MER33 DNA MER1_type -22 302 5 257 237 66 0 chr21 33589949 33590025 -11317545 + L1MA10 LINE L1 6246 6326 -8 566 28 14 0 chr21 33590213 33590285 -11317285 + (TC)n Simple_repeat Simple_repeat 2 74 0 951 196 240 0 chr21 33590953 33591228 -11316342 + MER58B DNA MER1_type 1 341 0 457 324 58 21 chr21 33591264 33591505 -11316065 - MIR SINE MIR 0 262 13 543 241 116 39 chr21 33592108 33592419 -11315151 + L1ME4a LINE L1 5611 5945 -176 219 238 24 24 chr21 33592555 33592639 -11314931 + T-rich Low_complexity Low_complexity 6 89 0 2310 190 22 2 chr21 33593272 33593730 -11313840 + MLT1C LTR MaLR 1 467 0 215 171 0 86 chr21 33593909 33593979 -11313591 + (CCCA)n Simple_repeat Simple_repeat 4 67 0 2288 92 44 0 chr21 33594024 33594318 -11313252 - AluSc SINE Alu -2 307 1 443 284 0 35 chr21 33594403 33594519 -11313051 + MER81 DNA DNA 1 112 -2 1842 100 0 4 chr21 33594724 33594963 -11312607 - AluSq SINE Alu -18 295 58 27 82 0 20 chr21 33595519 33595585 -11311985 + AT_rich Low_complexity Low_complexity 1 66 -30 2096 136 3 0 chr21 33595585 33595879 -11311691 - AluSx SINE Alu -17 295 1 27 82 0 20 chr21 33595879 33595910 -11311660 + AT_rich Low_complexity Low_complexity 66 96 0 262 309 83 30 chr21 33598377 33598545 -11309025 + L3 LINE CR1 1162 1338 -239 352 314 42 98 chr21 33598659 33599038 -11308532 - L2 LINE L2 0 3272 2915 624 199 0 8 chr21 33599112 33599243 -11308327 + MSTD LTR MaLR 1 130 -266 26 0 0 0 chr21 33600185 33600211 -11307359 + AT_rich Low_complexity Low_complexity 1 26 0 219 173 0 19 chr21 33600512 33600564 -11307006 + A-rich Low_complexity Low_complexity 6 56 0 249 317 55 62 chr21 33600820 33600965 -11306605 - L2 LINE L2 -2 3311 3168 397 172 108 0 chr21 33601081 33601174 -11306396 + MER20 DNA MER1_type 117 219 0 47 33 0 0 chr21 33602887 33602948 -11304622 + AT_rich Low_complexity Low_complexity 1 61 0 254 186 23 79 chr21 33602951 33603128 -11304442 + (TTATA)n Simple_repeat Simple_repeat 3 169 0 430 260 152 61 chr21 33604135 33604431 -11303139 + L1ME4a LINE L1 5682 6004 -117 181 347 28 0 chr21 33605703 33605775 -11301795 + MIR SINE MIR 66 139 -123 2994 153 32 18 chr21 33605902 33606288 -11301282 - L1MB1 LINE L1 -5 6163 5765 2195 136 0 3 chr21 33606288 33606590 -11300980 - AluSx SINE Alu -11 301 1 2994 153 32 18 chr21 33606590 33606766 -11300804 - L1MB1 LINE L1 -403 5765 5593 31 96 0 0 chr21 33607145 33607239 -11300331 + AT_rich Low_complexity Low_complexity 1 94 0 265 234 128 69 chr21 33607610 33607798 -11299772 + MIR3 SINE MIR 4 202 -6 1725 182 7 23 chr21 33609585 33609893 -11297677 - AluJo SINE Alu -9 303 1 287 313 50 0 chr21 33610077 33610176 -11297394 - MIR SINE MIR -12 250 147 818 176 33 16 chr21 33610178 33610360 -11297210 + MER53 DNA DNA 2 186 -3 2840 69 17 0 chr21 33610522 33610884 -11296686 + L1PA7 LINE L1 5771 6138 -16 28 0 0 0 chr21 33610884 33610912 -11296658 + AT_rich Low_complexity Low_complexity 1 28 0 644 111 41 0 chr21 33610912 33611083 -11296487 + (TA)n Simple_repeat Simple_repeat 1 178 0 1022 235 59 0 chr21 33611416 33611654 -11295916 - MIR SINE MIR -5 257 6 2194 101 3 7 chr21 33612323 33612621 -11294949 + AluSq SINE Alu 2 298 -15 257 289 94 31 chr21 33615663 33615735 -11291835 - MIR SINE MIR -70 192 126 2081 121 7 16 chr21 33615735 33616042 -11291528 + AluSg SINE Alu 1 304 -6 257 289 94 31 chr21 33616042 33616097 -11291473 - MIR SINE MIR -136 126 57 1923 61 0 4 chr21 33616181 33616426 -11291144 + AluY SINE Alu 65 308 -3 254 402 145 7 chr21 33616430 33616706 -11290864 + L3 LINE CR1 67 380 -1197 322 309 71 100 chr21 33616821 33617171 -11290399 - L3 LINE CR1 -85 1492 1153 1828 273 57 58 chr21 33617295 33618799 -11288771 - L1MEc LINE L1 -3927 2469 968 291 344 88 29 chr21 33618900 33619240 -11288330 - L1MEc LINE L1 -5926 470 111 24 0 0 0 chr21 33619746 33619770 -11287800 + AT_rich Low_complexity Low_complexity 1 24 0 213 380 0 33 chr21 33621495 33621587 -11285983 - L2 LINE L2 -177 3095 3007 2125 147 92 18 chr21 33622100 33622535 -11285035 + MLT1C LTR MaLR 1 467 0 303 291 73 9 chr21 33622695 33622805 -11284765 + MIR3 SINE MIR 14 130 -78 2419 94 0 0 chr21 33623260 33623568 -11284002 - AluSg SINE Alu -2 308 1 370 272 94 37 chr21 33623606 33623797 -11283773 + L2 LINE L2 3053 3254 -59 2721 113 21 37 chr21 33623806 33624241 -11283329 + MSTC LTR MaLR 1 428 0 202 385 0 0 chr21 33624294 33624359 -11283211 + L2 LINE L2 3206 3270 -2 1159 218 142 121 chr21 33624610 33625249 -11282321 + MLT1E1 LTR MaLR 1 653 -1 810 192 28 6 chr21 33625298 33625480 -11282090 + L1MB4 LINE L1 5967 6152 -28 450 53 0 0 chr21 33625482 33625539 -11282031 + (TA)n Simple_repeat Simple_repeat 1 57 0 1193 67 0 0 chr21 33625539 33625688 -11281882 - AluY SINE Alu -13 298 150 50 0 0 0 chr21 33625855 33625905 -11281665 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr21 33626760 33626782 -11280788 + AT_rich Low_complexity Low_complexity 1 22 0 336 232 64 64 chr21 33626901 33627026 -11280544 - MIR SINE MIR -77 131 7 2480 51 0 0 chr21 33627082 33627375 -11280195 - AluY SINE Alu -18 293 1 21 0 0 0 chr21 33627806 33627827 -11279743 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr21 33627883 33627908 -11279662 + AT_rich Low_complexity Low_complexity 1 25 0 1532 189 32 30 chr21 33629540 33629911 -11277659 + MER96B DNA MER1_type? 7 378 -39 1065 196 0 0 chr21 33631257 33631436 -11276134 - FRAM SINE Alu -1 175 1 1718 158 148 5 chr21 33632858 33633089 -11274481 - MLT1C LTR MaLR -10 457 260 405 0 0 0 chr21 33633089 33633134 -11274436 + (TG)n Simple_repeat Simple_repeat 1 45 0 1718 158 148 5 chr21 33633134 33633302 -11274268 - MLT1C LTR MaLR -207 260 1 273 165 101 13 chr21 33634124 33634203 -11273367 - MER81 DNA DNA -17 97 12 234 307 85 37 chr21 33635589 33635778 -11271792 + LTR67 LTR ERVL 352 549 -8 231 88 0 0 chr21 33636776 33636810 -11270760 + (TC)n Simple_repeat Simple_repeat 2 35 0 678 200 16 0 chr21 33638185 33638310 -11269260 - MER20 DNA MER1_type 0 219 93 183 129 0 0 chr21 33638895 33638926 -11268644 + (TTCTCC)n Simple_repeat Simple_repeat 3 33 0 4759 61 2 5 chr21 33639055 33639626 -11267944 - L1PA7 LINE L1 -1 6153 5585 237 224 0 0 chr21 33639742 33639800 -11267770 + (CA)n Simple_repeat Simple_repeat 1 58 0 250 306 10 10 chr21 33640185 33640283 -11267287 + MIR SINE MIR 155 252 -10 180 283 67 0 chr21 33640807 33640867 -11266703 - MIR SINE MIR -25 237 174 211 50 38 75 chr21 33640879 33640959 -11266611 + (TTAA)n Simple_repeat Simple_repeat 4 80 0 243 153 24 118 chr21 33641014 33641099 -11266471 - MIR SINE MIR -63 199 123 3254 38 5 0 chr21 33641125 33641496 -11266074 - L1PA4 LINE L1 0 6155 5783 2048 89 0 11 chr21 33642085 33642354 -11265216 + AluSx SINE Alu 1 266 -46 208 340 20 20 chr21 33643095 33643195 -11264375 - MIR SINE MIR -65 143 44 2186 123 7 0 chr21 33643265 33643567 -11264003 - AluSx SINE Alu -8 304 1 218 345 0 11 chr21 33643854 33643941 -11263629 + GA-rich Low_complexity Low_complexity 3 88 0 530 270 80 35 chr21 33644271 33644497 -11263073 + L1MC4 LINE L1 6500 6735 -1307 1069 177 160 105 chr21 33644499 33644931 -11262639 + MER4C LTR ERV1 1 654 -10 3155 243 65 41 chr21 33644934 33646093 -11261477 + L1MC4 LINE L1 6732 7918 -124 267 260 96 19 chr21 33646454 33646558 -11261012 - MER5A DNA MER1_type -22 167 56 376 164 90 0 chr21 33647797 33647864 -11259706 + MER5A DNA MER1_type 2 74 -115 2441 116 9 3 chr21 33647864 33648209 -11259361 - L1PA13 LINE L1 -200 5968 5622 1239 117 34 0 chr21 33648209 33648383 -11259187 + L1PA13 LINE L1 5979 6163 0 393 184 58 11 chr21 33648384 33648471 -11259099 + MER5A DNA MER1_type 61 151 -38 492 161 102 15 chr21 33648722 33648859 -11258711 - MER96B DNA MER1_type? -19 398 250 1644 160 0 35 chr21 33649437 33649719 -11257851 + AluJo SINE Alu 2 273 -39 228 146 91 18 chr21 33649765 33649820 -11257750 - L1MC/D LINE L1 -1896 5912 5854 2175 162 16 65 chr21 33649877 33649953 -11257617 - MLT2D LTR ERVL 0 414 336 751 93 17 0 chr21 33649953 33650071 -11257499 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 2175 162 16 65 chr21 33650071 33650427 -11257143 - MLT2D LTR ERVL -78 336 3 360 322 75 28 chr21 33650625 33650839 -11256731 - L1MC/D LINE L1 -2125 5683 5460 2506 161 26 12 chr21 33651176 33651592 -11255978 - MSTB LTR MaLR -4 422 1 422 331 136 0 chr21 33651647 33651831 -11255739 - MIR SINE MIR -29 233 25 2477 157 50 33 chr21 33652940 33653118 -11254452 + MLT1C LTR MaLR 1 174 -293 1668 192 0 17 chr21 33653118 33653415 -11254155 + AluJo SINE Alu 5 296 -16 2477 157 50 33 chr21 33653415 33653695 -11253875 + MLT1C LTR MaLR 174 467 0 2535 71 0 0 chr21 33654859 33655170 -11252400 + AluY SINE Alu 1 311 0 420 296 82 19 chr21 33655185 33655224 -11252346 + MLT1K LTR MaLR 3 38 -550 180 0 0 0 chr21 33655224 33655244 -11252326 + (TTG)n Simple_repeat Simple_repeat 2 21 0 420 296 82 19 chr21 33655244 33655410 -11252160 + MLT1K LTR MaLR 38 221 -367 25 0 0 0 chr21 33655898 33655923 -11251647 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr21 33656175 33656219 -11251351 + AT_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr21 33657787 33657815 -11249755 + AT_rich Low_complexity Low_complexity 1 28 0 1215 195 103 0 chr21 33658057 33658344 -11249226 - L1MD3 LINE L1 0 8042 7739 2198 145 0 0 chr21 33659493 33659797 -11247773 - AluSx SINE Alu -8 304 1 453 247 182 13 chr21 33659821 33659975 -11247595 + MER5A DNA MER1_type 9 188 -1 898 192 44 6 chr21 33660140 33660322 -11247248 + MER53 DNA DNA 1 189 0 423 145 38 38 chr21 33660458 33660589 -11246981 + CT-rich Low_complexity Low_complexity 3 133 0 784 260 18 59 chr21 33661906 33662179 -11245391 + MER34 LTR ERV1 1 262 -280 262 152 25 89 chr21 33662180 33662259 -11245311 - MLT2A1 LTR ERVL 0 444 371 16147 76 2 4 chr21 33662259 33664300 -11243270 - HERVL-A1 LTR ERVL -3617 2037 1 3628 75 9 0 chr21 33664313 33664752 -11242818 - MLT2A1 LTR ERVL -1 443 1 720 188 82 82 chr21 33664776 33665058 -11242512 + MER34 LTR ERV1 261 542 0 429 271 109 35 chr21 33666147 33666376 -11241194 - L1MC5 LINE L1 -408 7553 7308 233 321 46 0 chr21 33666405 33666514 -11241056 - L1MC4 LINE L1 -595 7447 7334 1049 181 48 72 chr21 33666516 33666874 -11240696 - L1MC4a LINE L1 -632 7228 6908 1383 169 0 25 chr21 33666874 33667111 -11240459 - AluJo SINE Alu -11 301 71 955 274 58 82 chr21 33667143 33667749 -11239821 - L1MC4a LINE L1 -903 6905 6315 1512 256 46 15 chr21 33668033 33668443 -11239127 - L1MC4a LINE L1 -1878 5930 5508 297 381 27 14 chr21 33668665 33668812 -11238758 + MIR3 SINE MIR 2 150 -58 340 302 47 0 chr21 33669140 33669226 -11238344 - MIR SINE MIR -67 141 52 416 359 43 21 chr21 33669541 33669775 -11237795 - MIR SINE MIR -6 256 18 366 281 79 94 chr21 33669978 33670444 -11237126 + L2 LINE L2 2814 3272 -41 2113 142 3 0 chr21 33670776 33671079 -11236491 - AluSx SINE Alu -8 304 1 290 314 151 17 chr21 33671389 33671561 -11236009 - MIR SINE MIR -41 221 27 878 158 82 18 chr21 33672209 33672380 -11235190 - MER5A DNA MER1_type -5 184 3 198 0 0 0 chr21 33673222 33673244 -11234326 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 249 222 21 28 chr21 33674560 33674704 -11232866 + CT-rich Low_complexity Low_complexity 2 144 0 1724 166 86 84 chr21 33675425 33675711 -11231859 - MLT1C LTR MaLR 0 467 178 1984 148 0 3 chr21 33675711 33676009 -11231561 - AluSx SINE Alu -15 297 1 1724 166 86 84 chr21 33676009 33676150 -11231420 - MLT1C LTR MaLR -289 178 39 270 0 0 0 chr21 33676150 33676180 -11231390 + (TA)n Simple_repeat Simple_repeat 2 31 0 1138 73 0 27 chr21 33676208 33676358 -11231212 - AluSp SINE Alu -167 146 1 1661 143 53 50 chr21 33677026 33677327 -11230243 - AluSx SINE Alu -10 302 1 182 256 224 32 chr21 33678522 33678647 -11228923 + MIR SINE MIR 111 259 -3 1520 192 13 23 chr21 33679405 33679707 -11227863 - MER21B LTR ERV1 -162 701 403 599 164 44 3 chr21 33679771 33679874 -11227696 - MLT1D LTR MaLR 0 577 416 2583 156 21 16 chr21 33679874 33680298 -11227272 - MSTB LTR MaLR 0 426 1 599 164 44 3 chr21 33680298 33680312 -11227258 - MLT1D LTR MaLR -161 416 404 8084 174 112 2 chr21 33680312 33681787 -11225783 - MSTB-int LTR MaLR -14 1637 1 2344 153 18 83 chr21 33681787 33682243 -11225327 - MSTB LTR MaLR 0 426 1 1109 217 139 59 chr21 33682243 33682616 -11224954 - MLT1D LTR MaLR -102 403 1 1703 172 10 3 chr21 33683257 33683554 -11224016 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr21 33683870 33683894 -11223676 + AT_rich Low_complexity Low_complexity 1 24 0 316 349 89 0 chr21 33684268 33684503 -11223067 + L1MC/D LINE L1 2315 2570 -3576 2223 113 3 0 chr21 33684756 33685057 -11222513 + AluSp SINE Alu 8 309 -4 562 302 57 13 chr21 33685083 33685467 -11222103 + L1MC/D LINE L1 2917 3317 -2829 234 314 51 34 chr21 33685590 33685826 -11221744 + L1MC/D LINE L1 3583 3822 -2324 24 53 0 0 chr21 33686259 33686297 -11221273 + AT_rich Low_complexity Low_complexity 1 38 0 345 217 104 9 chr21 33686844 33686950 -11220620 + L1ME4a LINE L1 6004 6119 -2 196 284 198 25 chr21 33687196 33687358 -11220212 - MIR SINE MIR -63 199 10 286 313 92 46 chr21 33687429 33687560 -11220010 + MIR SINE MIR 54 190 -72 22 56 0 0 chr21 33687909 33687945 -11219625 + AT_rich Low_complexity Low_complexity 1 36 0 223 333 14 0 chr21 33689135 33689207 -11218363 - MER5A DNA MER1_type -11 178 106 511 320 101 39 chr21 33689389 33689827 -11217743 + L1MC/D LINE L1 4769 5233 -913 612 271 130 7 chr21 33689891 33690183 -11217387 + L1MC/D LINE L1 5317 5644 -2164 2339 92 3 0 chr21 33690313 33690616 -11216954 + AluSc SINE Alu 1 304 -5 323 282 146 64 chr21 33692713 33692752 -11214818 + L1MC/D LINE L1 5571 5605 -2203 1591 195 14 10 chr21 33692752 33693049 -11214521 + AluJo SINE Alu 1 298 -14 323 282 146 64 chr21 33693049 33693229 -11214341 + L1MC/D LINE L1 5605 5808 -2000 306 194 0 0 chr21 33693346 33693408 -11214162 + (CATA)n Simple_repeat Simple_repeat 3 64 0 787 206 93 0 chr21 33693436 33693630 -11213940 + MER20 DNA MER1_type 1 212 -7 2255 118 25 27 chr21 33693843 33694208 -11213362 + THE1B LTR MaLR 1 364 0 203 333 40 13 chr21 33695959 33696034 -11211536 + L2 LINE L2 2955 3031 -282 961 153 15 45 chr21 33696034 33696236 -11211334 + MLT2A2 LTR ERVL 1 196 -257 985 96 14 0 chr21 33696236 33696382 -11211188 + MSTA-int LTR MaLR 1504 1651 0 2296 158 19 23 chr21 33696382 33696744 -11210826 + MSTA LTR MaLR 1 362 -66 2033 150 36 25 chr21 33696744 33697104 -11210466 + THE1B LTR MaLR 1 364 0 2296 158 19 23 chr21 33697104 33697171 -11210399 + MSTA LTR MaLR 362 428 0 198 243 0 0 chr21 33697171 33697208 -11210362 + L2 LINE L2 3027 3063 -250 307 308 9 28 chr21 33697499 33697606 -11209964 - MIR SINE MIR -70 138 34 290 130 0 19 chr21 33698032 33698086 -11209484 + (TCC)n Simple_repeat Simple_repeat 3 55 0 391 256 29 51 chr21 33698213 33698350 -11209220 - MIR SINE MIR -36 226 93 189 274 274 0 chr21 33698487 33698582 -11208988 + MIR SINE MIR 2 122 -140 2438 75 7 3 chr21 33698661 33698969 -11208601 + AluY SINE Alu 1 309 -2 349 250 0 0 chr21 33699446 33699530 -11208040 + MER53 DNA DNA 1 84 -105 1398 190 43 25 chr21 33699896 33700175 -11207395 - AluJo SINE Alu -28 284 1 503 117 0 0 chr21 33700334 33700411 -11207159 + MADE1 DNA Mariner 4 80 0 251 27 0 27 chr21 33700955 33700992 -11206578 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 1792 28 0 0 chr21 33700993 33701206 -11206364 - L1PA4 LINE L1 -4 6151 5939 274 293 73 8 chr21 33701981 33702104 -11205466 + MIR SINE MIR 2 132 -130 273 57 0 0 chr21 33702901 33702936 -11204634 + (TG)n Simple_repeat Simple_repeat 2 36 0 330 171 0 0 chr21 33703050 33703120 -11204450 + CT-rich Low_complexity Low_complexity 1 70 0 42 20 0 0 chr21 33703957 33704006 -11203564 + AT_rich Low_complexity Low_complexity 1 49 0 1789 171 20 7 chr21 33704261 33704560 -11203010 + AluJo SINE Alu 1 303 -9 207 273 0 45 chr21 33706598 33706664 -11200906 + L2 LINE L2 3165 3227 -86 315 293 40 53 chr21 33707544 33707713 -11199857 - MIR SINE MIR -54 208 34 479 226 61 43 chr21 33707879 33708043 -11199527 + MIR SINE MIR 94 260 -2 376 167 0 0 chr21 33708446 33708518 -11199052 - MER103 DNA DNA -87 79 8 1122 298 88 44 chr21 33708769 33710048 -11197522 + L1ME4a LINE L1 4 1374 -4892 313 194 20 31 chr21 33710806 33710904 -11196666 + (TA)n Simple_repeat Simple_repeat 1 97 0 282 226 55 34 chr21 33710922 33711068 -11196502 + L1ME4a LINE L1 5063 5211 -918 1079 285 83 37 chr21 33711077 33711646 -11195924 + MLT1G1 LTR MaLR 1 595 0 441 268 37 77 chr21 33711648 33711894 -11195676 + L1ME4a LINE L1 5269 5504 -2474 885 239 92 0 chr21 33711897 33712115 -11195455 + MIR SINE MIR 15 252 -10 260 315 33 45 chr21 33712120 33712415 -11195155 + L1MC/D LINE L1 5484 5783 -381 265 332 50 50 chr21 33712879 33713078 -11194492 + MIR SINE MIR 2 200 -62 396 246 29 51 chr21 33715885 33716023 -11191547 + L2 LINE L2 3173 3307 -6 367 298 15 23 chr21 33716090 33716221 -11191349 + MIR SINE MIR 102 231 -31 320 206 140 19 chr21 33716284 33716391 -11191179 + L1ME4a LINE L1 5525 5644 -460 348 311 67 59 chr21 33716540 33716810 -11190760 + L1ME4a LINE L1 5832 6103 -1 1184 113 0 6 chr21 33718758 33718918 -11188652 - AluSg/x SINE Alu -20 292 134 456 284 77 16 chr21 33719915 33720109 -11187461 - MIR SINE MIR -22 240 35 551 222 8 0 chr21 33720163 33720280 -11187290 + MER45A DNA AcHobo 39 156 -22 1338 206 44 32 chr21 33720288 33720627 -11186943 + MLT1A2 LTR MaLR 26 368 -6 233 242 220 0 chr21 33721033 33721124 -11186446 - LTR16C LTR ERVL -45 446 336 1196 282 130 15 chr21 33722876 33723330 -11184240 - L2 LINE L2 0 3313 2808 415 302 31 0 chr21 33723383 33723512 -11184058 + MER45A DNA AcHobo 2 134 -44 25 51 0 0 chr21 33723611 33723650 -11183920 + AT_rich Low_complexity Low_complexity 1 39 0 40965 31 21 1 chr21 33723832 33729857 -11177713 - L1PA2 LINE L1 -5 6150 1 240 149 30 15 chr21 33730932 33730999 -11176571 + CT-rich Low_complexity Low_complexity 2 69 0 1144 167 66 86 chr21 33731361 33731757 -11175813 + MLT1B LTR MaLR 1 388 -2 689 163 18 30 chr21 33731757 33731923 -11175647 - Charlie5 DNA MER1_type -46 2566 2403 2203 166 65 150 chr21 33732778 33733600 -11173970 - L1MC1 LINE L1 -6 6327 5576 213 39 0 0 chr21 33735085 33735111 -11172459 + (T)n Simple_repeat Simple_repeat 1 26 0 1779 168 19 13 chr21 33735910 33736220 -11171350 + AluJb SINE Alu 1 312 0 441 0 0 0 chr21 33737224 33737273 -11170297 + (CA)n Simple_repeat Simple_repeat 1 49 0 26 30 0 0 chr21 33738130 33738163 -11169407 + AT_rich Low_complexity Low_complexity 1 33 0 416 198 47 19 chr21 33738629 33738735 -11168835 + MER91C DNA MER1_type 32 140 0 499 284 35 52 chr21 33738792 33739024 -11168546 + L3 LINE CR1 1331 1558 -19 230 231 15 0 chr21 33739369 33739434 -11168136 + (TG)n Simple_repeat Simple_repeat 1 66 0 457 273 79 12 chr21 33739726 33739940 -11167630 + MIR SINE MIR 3 229 -33 314 195 106 44 chr21 33741598 33741711 -11165859 - L1ME4a LINE L1 -31 6090 5971 405 326 110 19 chr21 33742561 33742926 -11164644 - L1ME4a LINE L1 -307 5814 5417 2610 39 0 7 chr21 33742926 33743235 -11164335 - AluY SINE Alu -4 307 1 292 244 64 19 chr21 33744020 33744176 -11163394 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 1423 204 103 53 chr21 33744534 33744970 -11162600 + MLT1C LTR MaLR 1 458 -9 7784 28 23 0 chr21 33745865 33747211 -11160359 + L1PA4 LINE L1 4788 6155 0 368 343 88 24 chr21 33747211 33747417 -11160153 - L1ME4a LINE L1 -294 5827 5595 2173 122 3 0 chr21 33747417 33747713 -11159857 - AluSq SINE Alu -14 299 3 368 343 88 24 chr21 33747713 33747803 -11159767 - L1ME4a LINE L1 -526 5595 5512 311 309 131 0 chr21 33748018 33748193 -11159377 - L2 LINE L2 -254 3059 2862 274 279 114 21 chr21 33748388 33748528 -11159042 - L2 LINE L2 -639 2675 2523 838 189 40 0 chr21 33748770 33748945 -11158625 - MER53 DNA DNA -7 182 1 2128 186 9 54 chr21 33749041 33749428 -11158142 + MLT2D LTR ERVL 5 373 -41 378 0 0 0 chr21 33749428 33749470 -11158100 + (CA)n Simple_repeat Simple_repeat 1 42 0 2128 186 9 54 chr21 33749470 33749511 -11158059 + MLT2D LTR ERVL 373 414 0 22 0 0 0 chr21 33749626 33749648 -11157922 + AT_rich Low_complexity Low_complexity 1 22 0 525 270 153 18 chr21 33749796 33750018 -11157552 - L2 LINE L2 -147 3166 2915 323 335 54 30 chr21 33750061 33750228 -11157342 + MIR3 SINE MIR 21 191 -17 352 189 104 57 chr21 33751527 33751633 -11155937 + MER20 DNA MER1_type 75 185 -34 449 241 43 68 chr21 33752576 33752738 -11154832 - MER106A DNA MER1_type -13 223 66 2182 112 3 7 chr21 33752843 33753148 -11154422 + AluSx SINE Alu 3 306 -6 238 258 55 31 chr21 33753394 33753522 -11154048 - L1P4 LINE L1 -342 5821 5691 1774 226 5 16 chr21 33755028 33755405 -11152165 + MLT1A2 LTR MaLR 2 374 0 2726 121 89 9 chr21 33755571 33756010 -11151560 + LTR44 LTR ERV1 1 474 -45 655 195 0 92 chr21 33756010 33756174 -11151396 + MER83B LTR ERV1 1 149 -229 315 0 0 0 chr21 33756755 33756790 -11150780 + (TG)n Simple_repeat Simple_repeat 2 36 0 195 0 86 0 chr21 33756831 33756866 -11150704 + (TA)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chr21 33756910 33756936 -11150634 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 107 0 0 chr21 33756941 33756969 -11150601 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 189 11 11 chr21 33757012 33757107 -11150463 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 1940 159 13 82 chr21 33757124 33757514 -11150056 + MLT1A1 LTR MaLR 1 363 -2 1259 221 30 18 chr21 33757685 33758024 -11149546 - MLT1A1 LTR MaLR -13 352 10 252 200 0 0 chr21 33759654 33759709 -11147861 + U2 snRNA snRNA 1 55 -133 438 280 19 0 chr21 33759983 33760090 -11147480 - MER81 DNA DNA -2 112 4 687 193 14 35 chr21 33761128 33761273 -11146297 + MER63 DNA MER1_type 14 781 -281 757 234 41 0 chr21 33761353 33761524 -11146046 + MER5B DNA MER1_type 1 178 0 308 333 0 0 chr21 33761924 33762062 -11145508 - MER69 DNA AcHobo -102 2424 2287 * 318 239 9 97 chr21 33762059 33762172 -11145398 - MER69 DNA AcHobo -534 692 590 1531 195 36 0 chr21 33762194 33762471 -11145099 + AluJo SINE Alu 26 312 0 1673 240 71 16 chr21 33762502 33763005 -11144565 - L1ME3A LINE L1 -8 6162 5637 2820 111 14 0 chr21 33763263 33763633 -11143937 + THE1C LTR MaLR 1 375 0 432 254 109 29 chr21 33763648 33763786 -11143784 - MIR3 SINE MIR -28 180 32 197 359 118 12 chr21 33764004 33764174 -11143396 + L2 LINE L2 2646 2833 -481 332 204 112 10 chr21 33764642 33764740 -11142830 + L3 LINE CR1 650 757 -820 2362 117 58 17 chr21 33766029 33766389 -11141181 + THE1C LTR MaLR 1 375 0 996 155 5 91 chr21 33766911 33767130 -11140440 + AluJo SINE Alu 95 294 -18 416 233 131 34 chr21 33767774 33767950 -11139620 - MER106B DNA MER1_type -16 1043 28 237 307 112 50 chr21 33769664 33769843 -11137727 - MIR3 SINE MIR -12 196 7 388 321 0 0 chr21 33770257 33770369 -11137201 + MIR SINE MIR 102 213 -49 2179 93 4 0 chr21 33770539 33770861 -11136709 + AluY SINE Alu 1 323 0 216 111 0 0 chr21 33771242 33771278 -11136292 + (CAT)n Simple_repeat Simple_repeat 3 38 0 186 263 12 62 chr21 33771931 33772011 -11135559 + L2 LINE L2 3186 3261 -11 405 137 8 188 chr21 33772121 33772189 -11135381 + MER21B LTR ERV1 1 41 -822 1664 213 42 20 chr21 33772189 33772546 -11135024 - MLT1A1 LTR MaLR 0 365 1 405 137 8 188 chr21 33772546 33772594 -11134976 + MER21B LTR ERV1 41 96 -767 2632 253 55 36 chr21 33772601 33773348 -11134222 + MER21B LTR ERV1 19 779 -84 26 30 0 0 chr21 33773534 33773567 -11134003 + AT_rich Low_complexity Low_complexity 1 33 0 200 290 48 16 chr21 33774404 33774466 -11133104 + L2 LINE L2 3250 3313 0 21 0 0 0 chr21 33775168 33775189 -11132381 + AT_rich Low_complexity Low_complexity 1 21 0 1265 266 39 44 chr21 33775740 33775791 -11131779 - L1ME1 LINE L1 -9 6157 6107 1479 154 29 0 chr21 33775791 33776037 -11131533 - L1MA4A LINE L1 -6 6297 6045 1265 266 39 44 chr21 33776037 33776421 -11131149 - L1ME1 LINE L1 -59 6107 5724 246 286 39 0 chr21 33776823 33776900 -11130670 - L1MC4a LINE L1 -1655 6153 6074 1600 233 90 12 chr21 33776984 33777012 -11130558 - L1MC4a LINE L1 -1878 5930 5906 2296 122 65 11 chr21 33777012 33777366 -11130204 + THE1C LTR MaLR 3 375 0 1600 233 90 12 chr21 33777366 33777817 -11129753 - L1MC4a LINE L1 -1902 5906 5414 308 210 236 83 chr21 33779787 33779944 -11127626 - MER5A DNA MER1_type 0 189 9 183 42 0 0 chr21 33780408 33780432 -11127138 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 410 256 8 31 chr21 33780636 33780765 -11126805 - MIR SINE MIR -26 236 111 306 132 0 0 chr21 33781452 33781505 -11126065 + (TC)n Simple_repeat Simple_repeat 2 54 0 480 361 15 10 chr21 33781623 33781825 -11125745 - MIR SINE MIR -44 218 16 1578 152 52 26 chr21 33782015 33782285 -11125285 + AluJo SINE Alu 5 281 -31 216 186 0 23 chr21 33782297 33782340 -11125230 + (CA)n Simple_repeat Simple_repeat 2 43 0 481 133 26 80 chr21 33782340 33782453 -11125117 - MER53 DNA DNA -69 120 14 691 62 0 0 chr21 33782453 33782533 -11125037 + MADE1 DNA Mariner 1 80 0 3196 46 23 15 chr21 33782743 33783137 -11124433 + L1PA7 LINE L1 5758 6154 0 23 0 0 0 chr21 33783384 33783407 -11124163 + AT_rich Low_complexity Low_complexity 1 23 0 2820 10 0 10 chr21 33784330 33784643 -11122927 - AluYb8 SINE Alu -8 310 1 537 222 0 0 chr21 33785120 33785219 -11122351 - L1M4 LINE L1 -3562 2584 2486 443 235 106 41 chr21 33785600 33785770 -11121800 + MIR SINE MIR 76 256 -6 206 298 43 21 chr21 33786531 33786625 -11120945 + MIR SINE MIR 110 205 -57 192 167 0 0 chr21 33787804 33787834 -11119736 - MIR SINE MIR -114 148 119 1638 146 20 201 chr21 33787853 33788420 -11119150 - MER31A LTR ERV1 -3 482 23 2246 119 0 0 chr21 33788420 33788723 -11118847 + AluSg SINE Alu 1 303 -7 1638 146 20 201 chr21 33788723 33788743 -11118827 - MER31A LTR ERV1 -462 23 1 726 227 25 15 chr21 33788794 33788992 -11118578 - MIR SINE MIR -5 257 58 574 153 169 0 chr21 33788992 33789116 -11118454 - MER69 DNA AcHobo -2 2524 2380 1425 221 93 17 chr21 33789484 33789901 -11117669 + L1M4 LINE L1 2485 2933 -3213 24 0 0 0 chr21 33791185 33791209 -11116361 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr21 33791635 33791658 -11115912 + AT_rich Low_complexity Low_complexity 1 23 0 354 322 26 0 chr21 33791745 33791860 -11115710 + L2 LINE L2 3185 3302 -11 391 209 18 0 chr21 33791978 33792088 -11115482 + GA-rich Low_complexity Low_complexity 1 112 0 186 103 0 0 chr21 33793082 33793111 -11114459 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 282 316 51 23 chr21 33794968 33795145 -11112425 - L1MC4a LINE L1 -1878 5930 5749 2352 224 47 33 chr21 33795319 33795869 -11111701 - MER74A LTR ERVL 0 558 1 197 259 224 0 chr21 33796754 33796839 -11110731 - L2 LINE L2 -1 3271 3168 2577 202 7 13 chr21 33796885 33797346 -11110224 - LTR40b LTR ERVL 0 462 5 2678 105 27 14 chr21 33798697 33799067 -11108503 - THE1C LTR MaLR 0 375 1 2408 151 39 31 chr21 33799067 33799525 -11108045 + MLT1C LTR MaLR 6 467 0 1746 248 158 8 chr21 33799647 33799981 -11107589 - Zaphod DNA AcHobo -3 4028 3746 2318 77 10 0 chr21 33799981 33800279 -11107291 - AluSq SINE Alu -12 301 1 1746 248 158 8 chr21 33800279 33800582 -11106988 - Zaphod DNA AcHobo -285 3746 3295 1324 209 39 161 chr21 33800606 33801252 -11106318 - Zaphod DNA AcHobo -3369 662 96 2088 122 0 17 chr21 33801464 33801759 -11105811 + AluSx SINE Alu 3 292 -20 695 191 61 7 chr21 33803740 33803887 -11103683 + MER103 DNA DNA 6 160 -6 486 186 0 0 chr21 33804416 33804502 -11103068 - L1MB7 LINE L1 -14 6170 6085 723 69 20 0 chr21 33804610 33804712 -11102858 - L1PB1 LINE L1 0 6151 6048 239 291 0 0 chr21 33804739 33804794 -11102776 + (TA)n Simple_repeat Simple_repeat 1 55 0 573 135 52 0 chr21 33804875 33804971 -11102599 + L1PB1 LINE L1 5939 6039 -112 207 213 21 0 chr21 33805151 33805198 -11102372 + A-rich Low_complexity Low_complexity 2 49 0 269 158 0 18 chr21 33806550 33806607 -11100963 - MER5C DNA MER1_type -200 124 69 366 249 77 59 chr21 33806701 33806870 -11100700 + MLT1J LTR MaLR 222 393 -118 344 286 25 17 chr21 33807653 33807772 -11099798 + MER5C DNA MER1_type 5 124 -200 232 247 101 0 chr21 33807801 33807890 -11099680 + MER5C DNA MER1_type 213 310 -14 219 178 44 0 chr21 33808981 33809026 -11098544 + GA-rich Low_complexity Low_complexity 2 48 0 28 0 0 0 chr21 33813037 33813065 -11094505 + AT_rich Low_complexity Low_complexity 1 28 0 573 278 85 14 chr21 33814039 33814251 -11093319 + MIR SINE MIR 35 261 -1 21 0 0 0 chr21 33814900 33814921 -11092649 + AT_rich Low_complexity Low_complexity 1 21 0 201 176 0 0 chr21 33815280 33815314 -11092256 + A-rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 33815861 33815889 -11091681 + AT_rich Low_complexity Low_complexity 1 28 0 1229 123 54 20 chr21 33818446 33818567 -11089003 + MER2 DNA MER2_type 1 133 -212 1981 188 9 3 chr21 33818567 33818912 -11088658 - MER7A DNA MER2_type 0 346 2 1229 123 54 20 chr21 33818912 33818994 -11088576 + MER2 DNA MER2_type 133 211 -134 462 195 39 0 chr21 33819019 33819096 -11088474 + MER2 DNA MER2_type 266 345 0 2731 17 0 0 chr21 33819481 33819779 -11087791 + AluY SINE Alu 1 298 -13 558 216 117 0 chr21 33820451 33820562 -11087008 + FRAM SINE Alu 23 146 -30 3023 66 8 0 chr21 33820568 33820930 -11086640 + L1PA7 LINE L1 5781 6145 -9 869 242 52 20 chr21 33822477 33822725 -11084845 - MIR SINE MIR 0 262 7 301 335 74 25 chr21 33822962 33823165 -11084405 + MIR SINE MIR 2 214 -48 204 232 18 18 chr21 33823668 33823724 -11083846 + GA-rich Low_complexity Low_complexity 1 56 0 2162 133 0 0 chr21 33824270 33824578 -11082992 - AluSx SINE Alu 0 312 5 455 101 0 14 chr21 33825087 33825156 -11082414 - L1P LINE L1 -1740 4406 4339 2628 88 78 13 chr21 33825156 33825530 -11082040 + L1PA10 LINE L1 5771 6168 0 1709 183 7 0 chr21 33827830 33828119 -11079451 + AluJb SINE Alu 1 291 -21 345 298 35 58 chr21 33828129 33828300 -11079270 - MIR3 SINE MIR -3 205 39 761 244 28 11 chr21 33828302 33828478 -11079092 + LTR28 LTR ERV1 1 179 -841 295 113 109 0 chr21 33828459 33828534 -11079036 + LTR25 LTR ERV1 427 533 -261 * 1069 181 32 39 chr21 33829427 33829778 -11077792 - LTR45B LTR ERV1 -1 488 22 21 0 0 0 chr21 33830687 33830708 -11076862 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr21 33830827 33830852 -11076718 + AT_rich Low_complexity Low_complexity 1 25 0 723 317 70 0 chr21 33831045 33831316 -11076254 + MER46C DNA MER2_type 5 294 -44 22 0 0 0 chr21 33831852 33831874 -11075696 + AT_rich Low_complexity Low_complexity 1 22 0 206 323 81 10 chr21 33832582 33832681 -11074889 - L2 LINE L2 0 3313 3208 * 300 242 0 0 chr21 33832676 33832742 -11074828 + MIR SINE MIR 127 192 -70 247 234 0 16 chr21 33833816 33833880 -11073690 - L2 LINE L2 -24 3289 3227 260 330 106 22 chr21 33835658 33835837 -11071733 + MIR SINE MIR 28 221 -41 634 276 114 10 chr21 33836472 33836694 -11070876 - MIR SINE MIR -12 250 13 878 280 147 29 chr21 33836792 33837302 -11070268 + MLT1L LTR MaLR 46 615 0 1919 232 27 61 chr21 33837470 33838031 -11069539 - MER34 LTR ERV1 0 542 1 49 84 0 0 chr21 33838035 33838154 -11069416 + AT_rich Low_complexity Low_complexity 1 119 0 721 242 29 34 chr21 33838313 33838562 -11069008 - L1ME2 LINE L1 -298 5866 5650 584 257 168 5 chr21 33838547 33838761 -11068809 + L1ME2 LINE L1 5915 6163 -1 * 352 147 80 13 chr21 33838936 33839011 -11068559 - L1ME1 LINE L1 -307 5859 5780 317 277 0 0 chr21 33839314 33839408 -11068162 - L1MC4 LINE L1 -26 8016 7923 216 0 0 0 chr21 33840147 33840171 -11067399 + (TA)n Simple_repeat Simple_repeat 1 24 0 468 313 152 28 chr21 33840836 33841080 -11066490 - L1ME2 LINE L1 -833 5313 5101 1785 169 27 9 chr21 33841080 33841418 -11066152 + MER2 DNA MER2_type 1 344 0 468 313 152 28 chr21 33841418 33841674 -11065896 - L1ME2 LINE L1 -1045 5101 4751 1922 168 9 1 chr21 33841752 33842197 -11065373 - MER72 LTR ERV1 -105 617 136 2110 140 58 36 chr21 33842198 33842716 -11064854 - MLT2A2 LTR ERVL 0 554 1 775 182 0 8 chr21 33842716 33842848 -11064722 - MER72 LTR ERV1 -583 139 9 2290 151 44 12 chr21 33844112 33844523 -11063047 - MSTA LTR MaLR -4 424 1 417 286 38 8 chr21 33844745 33844878 -11062692 + LTR16C LTR ERVL 150 286 -205 1660 222 49 10 chr21 33844888 33845294 -11062276 + LTR40b LTR ERVL 40 461 -1 22 80 0 0 chr21 33845359 33845409 -11062161 + AT_rich Low_complexity Low_complexity 1 50 0 24 53 0 0 chr21 33845747 33845785 -11061785 + AT_rich Low_complexity Low_complexity 1 38 0 222 393 80 0 chr21 33846706 33846818 -11060752 - L2 LINE L2 -13 3259 3139 871 262 63 57 chr21 33847384 33847891 -11059679 + L1M4 LINE L1 3614 4123 -2023 420 228 0 22 chr21 33847893 33847985 -11059585 + FLAM SINE Alu 42 131 -12 424 298 0 0 chr21 33847992 33848133 -11059437 + L1M4 LINE L1 4115 4255 -1891 288 256 51 0 chr21 33848246 33848363 -11059207 + L1P LINE L1 4879 5001 -1145 1940 98 18 0 chr21 33848635 33848943 -11058627 + L1MA5A LINE L1 6000 6312 0 403 285 177 32 chr21 33849287 33849603 -11057967 + L2 LINE L2 2303 2664 -650 764 108 8 8 chr21 33850210 33850339 -11057231 + L1MA5A LINE L1 6169 6297 0 2453 89 58 17 chr21 33850836 33851196 -11056374 + THE1C LTR MaLR 1 375 0 186 315 22 45 chr21 33851575 33851664 -11055906 + L2 LINE L2 2896 2982 -290 1245 269 75 59 chr21 33851690 33852235 -11055335 + L1M4 LINE L1 3341 3876 -2270 207 0 0 0 chr21 33852235 33852258 -11055312 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 414 0 0 0 chr21 33852257 33852303 -11055267 + (GA)n Simple_repeat Simple_repeat 2 47 0 1245 269 75 59 chr21 33852258 33852571 -11054999 + L1M4 LINE L1 3876 4167 -1979 2794 201 11 7 chr21 33852745 33853301 -11054269 + MER74A LTR ERVL 1 558 0 330 264 70 23 chr21 33853469 33853598 -11053972 - L1M4 LINE L1 -3155 2991 2857 682 322 188 32 chr21 33853608 33854396 -11053174 + L2 LINE L2 2164 3136 -177 638 186 62 0 chr21 33854396 33854509 -11053061 - FLAM_A SINE Alu -13 120 1 682 322 188 32 chr21 33854509 33854720 -11052850 + L2 LINE L2 3136 3313 0 1551 127 0 22 chr21 33855562 33855790 -11051780 + AluJo SINE Alu 71 293 -19 239 345 150 0 chr21 33856044 33856157 -11051413 + L2 LINE L2 3134 3263 -9 23 54 0 0 chr21 33856992 33857029 -11050541 + AT_rich Low_complexity Low_complexity 1 37 0 21 82 0 0 chr21 33857041 33857090 -11050480 + AT_rich Low_complexity Low_complexity 1 49 0 271 227 41 49 chr21 33858526 33858646 -11048924 + MER5B DNA MER1_type 67 175 -3 1608 183 69 98 chr21 33859519 33860038 -11047532 - MLT1D LTR MaLR -1 504 1 24 0 0 0 chr21 33860457 33860481 -11047089 + AT_rich Low_complexity Low_complexity 1 24 0 441 54 0 0 chr21 33860574 33860630 -11046940 + (TG)n Simple_repeat Simple_repeat 2 57 0 540 250 0 0 chr21 33860630 33860774 -11046796 + (CATATA)n Simple_repeat Simple_repeat 4 147 0 300 250 0 0 chr21 33860774 33860862 -11046708 - L1MC4 LINE L1 -1339 6703 6616 247 136 0 0 chr21 33860890 33860934 -11046636 - L1MC4 LINE L1 -1339 6703 6660 441 311 131 33 chr21 33861260 33861809 -11045761 + L1ME4a LINE L1 5310 5912 -209 515 202 57 8 chr21 33862871 33862995 -11044575 + MER3 DNA MER1_type 2 131 -78 847 181 35 35 chr21 33863242 33863441 -11044129 - MER3 DNA MER1_type -9 200 2 23 0 0 0 chr21 33863564 33863587 -11043983 + AT_rich Low_complexity Low_complexity 1 23 0 1277 208 41 44 chr21 33864983 33865348 -11042222 - MLT1A2 LTR MaLR -7 367 4 273 303 106 14 chr21 33865378 33865520 -11042050 + MLT1I LTR MaLR 4 158 -251 1623 197 33 8 chr21 33865760 33866120 -11041450 + L1MB5 LINE L1 5797 6165 -9 217 303 0 34 chr21 33867412 33867531 -11040039 + GA-rich Low_complexity Low_complexity 4 118 0 180 0 0 0 chr21 33868051 33868071 -11039499 + (TTG)n Simple_repeat Simple_repeat 2 21 0 228 67 0 0 chr21 33868680 33868710 -11038860 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 44 20 0 0 chr21 33868820 33868871 -11038699 + AT_rich Low_complexity Low_complexity 1 51 0 316 236 67 11 chr21 33868893 33868982 -11038588 + MIR SINE MIR 36 129 -133 1894 219 65 12 chr21 33869341 33869887 -11037683 - L1MD2 LINE L1 -227 6132 5625 236 146 0 0 chr21 33870035 33870076 -11037494 + 5S rRNA rRNA 2 42 -79 192 77 0 0 chr21 33871293 33871319 -11036251 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 298 258 159 73 chr21 33872218 33872451 -11035119 - L2 LINE L2 -337 2977 2725 338 344 119 22 chr21 33872992 33873312 -11034258 + L2 LINE L2 2289 2639 -675 194 263 26 0 chr21 33873358 33873434 -11034136 + L2 LINE L2 2957 3034 -238 2293 119 0 0 chr21 33873576 33873886 -11033684 + AluSg SINE Alu 1 310 0 3675 88 0 0 chr21 33875249 33875785 -11031785 - L1P LINE L1 -958 5188 4653 1825 45 0 0 chr21 33875787 33876008 -11031562 + L1PA7 LINE L1 5929 6149 -5 1808 191 15 18 chr21 33876021 33876420 -11031150 + L1MB5 LINE L1 5776 6173 -1 357 169 36 125 chr21 33877276 33877377 -11030193 - LTR50 LTR ERVL -2 793 685 2282 131 5 52 chr21 33877377 33877716 -11029854 + THE1B LTR MaLR 1 322 -42 2361 110 0 0 chr21 33877716 33878026 -11029544 - AluSg SINE Alu 0 310 1 2282 131 5 52 chr21 33878026 33878068 -11029502 + THE1B LTR MaLR 322 364 0 357 169 36 125 chr21 33878068 33878212 -11029358 - LTR50 LTR ERVL -110 685 556 535 225 7 14 chr21 33878792 33878934 -11028636 - LTR41 LTR ERVL -632 141 1 572 269 122 35 chr21 33879194 33879480 -11028090 + MLT1J2 LTR MaLR 20 330 -120 749 185 161 12 chr21 33879549 33879711 -11027859 + MER5A DNA MER1_type 4 189 0 3221 68 0 0 chr21 33879850 33880276 -11027294 + LTR8 LTR ERV1 162 587 -104 225 0 0 0 chr21 33880277 33880302 -11027268 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2051 117 7 7 chr21 33880302 33880633 -11026937 + AluSq SINE Alu 1 331 0 777 240 16 70 chr21 33881765 33881963 -11025607 + MIR SINE MIR 12 194 -68 2399 78 3 0 chr21 33881963 33882258 -11025312 + AluSp SINE Alu 1 296 -17 777 240 16 70 chr21 33882258 33882317 -11025253 + MIR SINE MIR 194 255 -7 1171 213 137 72 chr21 33882849 33883338 -11024232 + LTR33A LTR ERVL 1 521 -2 516 178 75 9 chr21 33883388 33883495 -11024075 + MIR SINE MIR 23 136 -72 23 33 0 0 chr21 33883983 33884013 -11023557 + AT_rich Low_complexity Low_complexity 1 30 0 663 240 0 0 chr21 33884088 33884213 -11023357 - FLAM_A SINE Alu -17 125 1 381 22 0 0 chr21 33884311 33884357 -11023213 + (CA)n Simple_repeat Simple_repeat 1 46 0 931 213 148 0 chr21 33884542 33884819 -11022751 + MER33 DNA MER1_type 7 324 0 2158 87 0 51 chr21 33885529 33885841 -11021729 + AluY SINE Alu 1 296 -15 460 271 75 32 chr21 33886570 33886758 -11020812 + MLT1D LTR MaLR 1 196 -309 621 66 44 0 chr21 33886769 33886860 -11020710 + MSTB2 LTR MaLR 1 95 -362 879 159 20 60 chr21 33886871 33887072 -11020498 + MSTB2 LTR MaLR 263 455 -2 303 313 54 9 chr21 33887260 33887372 -11020198 + L2 LINE L2 3155 3271 -1 194 292 46 0 chr21 33887602 33887667 -11019903 + L2 LINE L2 2992 3059 -213 293 214 0 14 chr21 33888100 33888170 -11019400 + MER58 DNA MER1_type 2346 2414 -6 367 264 124 0 chr21 33889427 33889548 -11018022 + MIR3 SINE MIR 25 160 -48 2501 89 0 0 chr21 33889599 33889901 -11017669 + AluSc SINE Alu 1 302 -7 1753 140 0 62 chr21 33890087 33890203 -11017367 + AluJb SINE Alu 1 123 -189 2382 69 3 20 chr21 33890203 33890507 -11017063 - AluSg1 SINE Alu -10 299 1 1753 140 0 62 chr21 33890507 33890698 -11016872 + AluJb SINE Alu 123 289 -23 185 221 106 35 chr21 33891413 33891526 -11016044 - L2 LINE L2 -3037 277 157 * 2102 320 111 13 chr21 33891465 33892460 -11015110 + L3 LINE CR1 195 1286 -291 40 49 0 0 chr21 33892873 33892934 -11014636 + AT_rich Low_complexity Low_complexity 1 61 0 1780 178 0 29 chr21 33892942 33893257 -11014313 + AluJo SINE Alu 1 306 -6 240 254 0 0 chr21 33893638 33893693 -11013877 - MLT1E1 LTR MaLR -497 157 103 * 313 194 42 0 chr21 33893662 33893734 -11013836 - MLT1E LTR MaLR -432 161 87 1928 279 18 8 chr21 33894601 33895110 -11012460 + MLT1H LTR MaLR 20 533 -16 237 132 38 19 chr21 33896889 33896942 -11010628 + HSMAR1 DNA Mariner 1234 1287 0 1086 277 72 6 chr21 33898121 33898482 -11009088 - MLT1C LTR MaLR 0 467 83 4410 173 70 19 chr21 33899114 33899546 -11008024 - L1MA9 LINE L1 -38 6274 5866 2016 75 17 38 chr21 33899546 33899839 -11007731 - L1MA2 LINE L1 0 6304 6018 4410 173 70 19 chr21 33899839 33900374 -11007196 - L1MA9 LINE L1 -446 5866 5257 27 0 0 0 chr21 33900591 33900618 -11006952 + AT_rich Low_complexity Low_complexity 1 27 0 263 333 44 26 chr21 33900886 33901000 -11006570 + L2 LINE L2 3148 3263 -9 2180 103 3 23 chr21 33901307 33901617 -11005953 - AluSx SINE Alu 0 312 9 240 255 64 53 chr21 33902290 33902384 -11005186 - MIR SINE MIR -8 254 160 282 262 36 12 chr21 33902493 33902577 -11004993 + MLT1E1 LTR MaLR 1 86 -568 1472 200 35 32 chr21 33902609 33902949 -11004621 + MLT1E1 LTR MaLR 304 644 -10 1063 230 49 84 chr21 33903035 33903248 -11004322 + MER93a LTR ERV1 61 259 -143 1924 120 0 39 chr21 33903248 33903531 -11004039 + AluSx SINE Alu 3 274 -38 1063 230 49 84 chr21 33903531 33903661 -11003909 + MER93a LTR ERV1 259 392 -10 763 187 78 52 chr21 33904027 33904257 -11003313 + MER106A DNA MER1_type 1 236 0 379 297 70 0 chr21 33904290 33904418 -11003152 + L1ME3A LINE L1 6019 6155 -15 669 280 51 0 chr21 33904499 33904713 -11002857 + MIR SINE MIR 17 241 -21 281 26 0 26 chr21 33904744 33904783 -11002787 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1985 125 0 10 chr21 33904785 33905073 -11002497 - AluSx SINE Alu -27 285 1 409 316 0 51 chr21 33905374 33905551 -11002019 + MIR3 SINE MIR 11 178 -30 445 223 231 0 chr21 33905656 33905786 -11001784 - MIR SINE MIR -91 171 12 627 278 0 17 chr21 33906192 33906372 -11001198 + MER8 DNA MER2_type 1 177 -62 896 241 65 21 chr21 33907715 33908034 -10999536 + LTR16C LTR ERVL 52 485 -6 193 328 60 15 chr21 33908103 33908237 -10999333 - MIR SINE MIR -42 220 81 801 152 23 6 chr21 33908512 33908869 -10998701 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 776 346 169 10 chr21 33909451 33910026 -10997544 - L3 LINE CR1 -14 1563 898 246 313 107 9 chr21 33910026 33910138 -10997432 - L3 LINE CR1 -977 600 478 332 253 89 53 chr21 33910444 33910634 -10996936 - L1MEc LINE L1 -4092 2304 2108 250 236 0 42 chr21 33910635 33910707 -10996863 + T-rich Low_complexity Low_complexity 2 70 0 230 215 43 65 chr21 33911031 33911124 -10996446 - L1MEc LINE L1 -4676 1720 1630 265 347 90 5 chr21 33911255 33911477 -10996093 - HAL1 LINE L1 -886 1621 1381 1860 108 0 0 chr21 33911576 33911825 -10995745 + AluSc SINE Alu 30 278 -31 270 304 71 30 chr21 33911875 33912043 -10995527 - L1MEc LINE L1 -4976 1229 1055 2172 120 17 0 chr21 33912461 33912762 -10994808 - AluSx SINE Alu -6 306 1 27 29 0 0 chr21 33914762 33914796 -10992774 + AT_rich Low_complexity Low_complexity 1 34 0 7935 125 30 39 chr21 33915720 33917030 -10990540 + HSMAR2 DNA Mariner 2 1300 -2 316 293 139 15 chr21 33917078 33917337 -10990233 + L2 LINE L2 1632 1922 -1392 282 292 71 71 chr21 33918192 33918459 -10989111 + L2 LINE L2 2954 3220 -52 610 301 73 17 chr21 33919193 33919646 -10987924 + LTR33 LTR ERVL 5 512 -9 1734 162 198 10 chr21 33919794 33920177 -10987393 - MLT2C2 LTR ERVL -9 455 1 183 80 0 0 chr21 33920414 33920439 -10987131 + (T)n Simple_repeat Simple_repeat 1 25 0 2546 167 32 43 chr21 33921092 33921239 -10986331 + LOR1b LTR ERV1 1 148 -313 2039 150 7 0 chr21 33921239 33921539 -10986031 + AluSx SINE Alu 1 302 -10 2546 167 32 43 chr21 33921539 33921857 -10985713 + LOR1b LTR ERV1 148 461 0 225 65 0 0 chr21 33922083 33922114 -10985456 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 234 0 0 0 chr21 33922218 33922244 -10985326 + (TC)n Simple_repeat Simple_repeat 1 26 0 578 175 10 0 chr21 33922590 33922687 -10984883 + Tigger6 DNA MER2_type 1498 1595 -2 456 313 14 7 chr21 33924200 33924344 -10983226 + MIR SINE MIR 4 148 -114 600 289 82 72 chr21 33925239 33925640 -10981930 - MLT1L LTR MaLR -81 534 130 1095 160 0 11 chr21 33926306 33926493 -10981077 + L1MD2 LINE L1 6174 6358 -1 920 161 23 17 chr21 33926503 33926677 -10980893 - L1MA5A LINE L1 -80 6217 6043 609 111 40 10 chr21 33926677 33926770 -10980800 + L1MA5A LINE L1 6190 6291 -6 183 310 130 10 chr21 33928171 33928271 -10979299 - L2 LINE L2 -433 2881 2770 398 296 47 60 chr21 33928857 33929090 -10978480 + L1ME4a LINE L1 5545 5774 -347 375 236 63 8 chr21 33929199 33929326 -10978244 + L1ME4a LINE L1 5979 6112 -9 2150 77 0 7 chr21 33929331 33929605 -10977965 + L1PA7 LINE L1 5883 6154 0 342 0 0 0 chr21 33929865 33929903 -10977667 + (CA)n Simple_repeat Simple_repeat 2 39 0 2537 68 0 0 chr21 33930547 33930858 -10976712 - AluY SINE Alu 0 311 1 335 295 41 0 chr21 33931245 33931367 -10976203 + LTR16A LTR ERVL 2 128 -322 287 277 51 20 chr21 33931710 33931887 -10975683 - L1P5 LINE L1 -674 5482 5292 2087 81 0 54 chr21 33931923 33932244 -10975326 - AluY SINE Alu 0 305 1 227 211 0 0 chr21 33932256 33932308 -10975262 - L1MA9 LINE L1 -70 6242 6191 282 296 34 63 chr21 33932335 33932465 -10975105 - L1M4 LINE L1 -913 5233 5101 2004 124 0 0 chr21 33932465 33932738 -10974832 - AluSg SINE Alu -16 294 22 282 296 34 63 chr21 33932738 33932938 -10974632 - L1M4 LINE L1 -1045 5101 4915 364 226 167 54 chr21 33933741 33933909 -10973661 + MIR3 SINE MIR 21 207 -1 1512 185 34 20 chr21 33934354 33934652 -10972918 + AluJo SINE Alu 6 307 -5 684 161 17 28 chr21 33934669 33934849 -10972721 + GA-rich Low_complexity Low_complexity 3 180 0 569 194 0 25 chr21 33934880 33935040 -10972530 + GA-rich Low_complexity Low_complexity 4 159 0 632 181 24 18 chr21 33935057 33935223 -10972347 + GA-rich Low_complexity Low_complexity 3 169 0 696 141 47 6 chr21 33935249 33935419 -10972151 + GA-rich Low_complexity Low_complexity 4 180 0 248 289 87 39 chr21 33937182 33937286 -10970284 + L2 LINE L2 2538 2646 -668 292 264 12 10 chr21 33937476 33937581 -10969989 + L1ME LINE L1 5724 5804 -317 2235 118 0 0 chr21 33937613 33937910 -10969660 + AluY SINE Alu 1 297 -14 372 22 0 0 chr21 33938376 33938421 -10969149 + (TG)n Simple_repeat Simple_repeat 1 45 0 213 259 9 18 chr21 33939668 33939780 -10967790 + CT-rich Low_complexity Low_complexity 2 112 0 275 243 71 0 chr21 33939833 33939903 -10967667 - MIR SINE MIR -96 166 92 3399 82 7 0 chr21 33939978 33940405 -10967165 - L1PA7 LINE L1 -1 6153 5724 1672 178 12 94 chr21 33941973 33942389 -10965181 - MLT1B LTR MaLR -8 382 1 1864 127 65 0 chr21 33942761 33943036 -10964534 + AluSx SINE Alu 1 293 -19 1518 187 30 11 chr21 33943218 33943526 -10964044 - MLT1D LTR MaLR 0 505 212 265 152 62 179 chr21 33943544 33943656 -10963914 - MLT1D LTR MaLR -527 99 1 1599 140 0 0 chr21 33943775 33944011 -10963559 - AluJb SINE Alu -7 305 70 1092 281 95 11 chr21 33944387 33944831 -10962739 - HERV16 LTR ERVL -3952 1044 564 180 0 0 0 chr21 33944851 33944871 -10962699 + (AGGTG)n Simple_repeat Simple_repeat 3 22 0 447 204 0 0 chr21 33944909 33944997 -10962573 - MER96 DNA MER1_type? -87 88 1 1812 322 7 17 chr21 33945275 33945865 -10961705 + HERV16 LTR ERVL 2381 2964 -2032 1980 225 62 47 chr21 33946053 33946587 -10960983 - MLT1H LTR MaLR -3 546 5 206 258 0 48 chr21 33947358 33947420 -10960150 + CT-rich Low_complexity Low_complexity 1 59 0 316 169 108 15 chr21 33947930 33947995 -10959575 + MIR SINE MIR 2 72 -190 2574 129 38 22 chr21 33947996 33948444 -10959126 + MLT1C LTR MaLR 1 455 -12 284 275 113 56 chr21 33948456 33948616 -10958954 + MIR SINE MIR 69 237 -25 2819 73 3 21 chr21 33948627 33949009 -10958561 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr21 33949012 33949041 -10958529 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr21 33949678 33949706 -10957864 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 870 135 0 15 chr21 33951524 33951657 -10955913 - FLAM_C SINE Alu -2 131 1 2339 130 11 22 chr21 33952370 33952738 -10954832 - THE1B LTR MaLR 0 364 1 2252 114 0 0 chr21 33953078 33953377 -10954193 - AluSc SINE Alu -10 299 1 732 220 107 6 chr21 33954601 33954778 -10952792 - MLT1B LTR MaLR 0 390 196 2130 117 19 0 chr21 33955319 33955627 -10951943 - L1PB1 LINE L1 -41 6110 5797 393 233 123 20 chr21 33955631 33955777 -10951793 - MLT1B LTR MaLR -213 161 1 531 161 54 0 chr21 33957398 33957491 -10950079 - FLAM_A SINE Alu -26 116 19 356 221 15 0 chr21 33958130 33958198 -10949372 + Tigger2 DNA MER2_type 1 69 -2649 * 2628 126 22 55 chr21 33958196 33958649 -10948921 + Tigger2 DNA MER2_type 2280 2717 -1 2332 104 0 0 chr21 33959088 33959387 -10948183 + AluSx SINE Alu 1 299 -13 751 216 71 123 chr21 33959443 33959882 -10947688 + L1MC4 LINE L1 7617 8032 -10 209 176 39 0 chr21 33960274 33960325 -10947245 + T-rich Low_complexity Low_complexity 2 54 0 1905 128 35 0 chr21 33960328 33960610 -10946960 - AluSx SINE Alu -1 311 20 556 97 258 24 chr21 33960813 33960937 -10946633 - MER4C LTR ERV1 -22 443 291 285 115 0 195 chr21 33960997 33961084 -10946486 - MER4A LTR ERV1 -307 357 288 * 1706 148 35 46 chr21 33961073 33961418 -10946152 - MER4A LTR ERV1 -323 341 1 789 243 33 24 chr21 33961426 33961636 -10945934 - MIR SINE MIR -43 219 8 212 254 16 0 chr21 33962237 33962300 -10945270 + (TAG)n Simple_repeat Simple_repeat 3 66 0 316 210 49 0 chr21 33962330 33962411 -10945159 - MIR SINE MIR -66 196 112 451 313 94 10 chr21 33962459 33962651 -10944919 - MLT1J2 LTR MaLR 0 450 243 2416 83 0 0 chr21 33963474 33963776 -10943794 + AluSq SINE Alu 2 303 -10 182 118 29 0 chr21 33964032 33964066 -10943504 + CT-rich Low_complexity Low_complexity 6 40 0 3925 106 17 7 chr21 33964493 33965096 -10942474 + L1MA4A LINE L1 5692 6300 -3 1941 140 0 7 chr21 33965729 33966041 -10941529 + AluSx SINE Alu 1 310 0 2210 102 3 3 chr21 33966047 33966342 -10941228 + AluY SINE Alu 1 295 -16 281 276 31 71 chr21 33966594 33966682 -10940888 - L1ME4a LINE L1 -214 5907 5817 4979 81 11 0 chr21 33966682 33967350 -10940220 + L1PA14 LINE L1 5484 6158 -3 281 276 31 71 chr21 33967350 33967486 -10940084 - L1ME4a LINE L1 -304 5817 5692 888 196 0 18 chr21 33970097 33970260 -10937310 - FRAM SINE Alu -11 165 6 596 278 23 12 chr21 33970639 33970812 -10936758 - MLT1J LTR MaLR -332 179 5 24 77 0 0 chr21 33970966 33971018 -10936552 + AT_rich Low_complexity Low_complexity 1 52 0 1801 146 47 4 chr21 33971636 33971911 -10935659 + AluSx SINE Alu 1 287 -25 2338 86 3 10 chr21 33972114 33972416 -10935154 - AluSq SINE Alu -13 300 1 2475 76 0 3 chr21 33972926 33973228 -10934342 + AluSc SINE Alu 5 305 -4 401 341 135 17 chr21 33973427 33973841 -10933729 + L2 LINE L2 2228 2690 -624 332 356 17 9 chr21 33973862 33973977 -10933593 - L2 LINE L2 -2 3311 3196 919 206 98 9 chr21 33974052 33974266 -10933304 + MLT1D LTR MaLR 271 503 -2 459 0 0 0 chr21 33974914 33974965 -10932605 + (CA)n Simple_repeat Simple_repeat 2 52 0 1740 227 12 58 chr21 33975885 33976161 -10931409 - MER41E LTR ERV1 -38 474 187 183 42 0 0 chr21 33976161 33976185 -10931385 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1849 94 0 28 chr21 33976185 33976439 -10931131 - AluSx SINE Alu -61 251 5 1740 227 12 58 chr21 33976439 33976645 -10930925 - MER41E LTR ERV1 -323 189 13 200 355 66 0 chr21 33979052 33979173 -10928397 + MIR SINE MIR 1 129 -133 23 0 0 0 chr21 33979459 33979482 -10928088 + AT_rich Low_complexity Low_complexity 1 23 0 1048 253 68 66 chr21 33979793 33980298 -10927272 + MLT1H LTR MaLR 3 549 0 180 0 0 0 chr21 33980348 33980368 -10927202 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 435 227 25 59 chr21 33980368 33980487 -10927083 - FLAM_C SINE Alu -27 116 2 440 221 74 0 chr21 33980700 33980822 -10926748 - MIR SINE MIR -62 200 70 787 219 12 0 chr21 33981230 33981399 -10926171 + MER5A DNA MER1_type 3 173 -16 923 218 87 5 chr21 33981454 33981660 -10925910 + MER58A DNA MER1_type 2 224 0 650 223 268 21 chr21 33982021 33982357 -10925213 + LTR16A LTR ERVL 25 443 -7 364 260 5 10 chr21 33982916 33983118 -10924452 + GA-rich Low_complexity Low_complexity 1 200 0 289 146 12 98 chr21 33983178 33983260 -10924310 + L1ME3A LINE L1 6095 6169 -1 502 284 6 27 chr21 33983957 33984140 -10923430 - L2 LINE L2 -3 3310 3132 330 284 228 14 chr21 33984256 33984545 -10923025 - L2 LINE L2 -556 2758 2408 244 285 103 56 chr21 33985442 33985656 -10921914 - L2 LINE L2 -409 2905 2682 21 36 0 0 chr21 33987438 33987466 -10920104 + AT_rich Low_complexity Low_complexity 1 28 0 3830 136 68 0 chr21 33988391 33989052 -10918518 + L1MA4 LINE L1 5587 6292 -8 987 227 28 82 chr21 33989184 33989576 -10917994 + L1MC5 LINE L1 6702 7072 -889 1083 231 149 42 chr21 33989579 33990082 -10917488 + L1MC5 LINE L1 7235 7791 -170 2027 153 95 3 chr21 33990082 33990441 -10917129 + MSTA LTR MaLR 1 392 -36 323 248 75 45 chr21 33990476 33990609 -10916961 + L1MC5 LINE L1 7789 7925 -36 2452 173 117 2 chr21 33990707 33991169 -10916401 - MLT2B2 LTR ERVL 0 515 1 38 51 0 0 chr21 33991444 33991503 -10916067 + AT_rich Low_complexity Low_complexity 1 59 0 1618 146 0 87 chr21 33993595 33993786 -10913784 - AluJb SINE Alu 0 304 151 228 35 0 0 chr21 33993786 33993815 -10913755 + (TGG)n Simple_repeat Simple_repeat 3 31 0 1618 146 0 87 chr21 33993815 33993954 -10913616 - AluJb SINE Alu -153 151 1 280 297 102 34 chr21 33994134 33994252 -10913318 + L2 LINE L2 2927 3052 -220 214 281 16 16 chr21 33994464 33994528 -10913042 + L2 LINE L2 3207 3270 -2 1318 169 52 28 chr21 33994966 33995215 -10912355 + AluJo SINE Alu 1 255 -57 2059 129 3 13 chr21 33996312 33996615 -10910955 - AluSx SINE Alu -12 300 1 2073 126 23 62 chr21 33996856 33997245 -10910325 - THE1C LTR MaLR -1 374 1 428 274 105 25 chr21 33997373 33997735 -10909835 - Tigger8 DNA MER2_type -128 538 148 303 263 84 74 chr21 33997871 33998061 -10909509 + L2 LINE L2 2855 3046 -226 357 82 0 0 chr21 33998339 33998388 -10909182 + (GA)n Simple_repeat Simple_repeat 2 50 0 2248 114 24 27 chr21 33998807 33999183 -10908387 - THE1C LTR MaLR 0 375 1 312 209 47 108 chr21 33999280 33999428 -10908142 + L1MCa LINE L1 1927 2065 -4361 854 106 56 13 chr21 33999428 34000307 -10907263 + (TA)n Simple_repeat Simple_repeat 2 1096 0 24 32 0 0 chr21 34000311 34000342 -10907228 + AT_rich Low_complexity Low_complexity 1 31 0 1703 188 3 3 chr21 34000390 34000693 -10906877 + AluJo SINE Alu 3 305 -7 1670 214 24 76 chr21 34003332 34003869 -10903701 - MLT2B1 LTR ERVL 0 520 12 29 47 0 0 chr21 34004066 34004109 -10903461 + AT_rich Low_complexity Low_complexity 1 43 0 222 333 154 8 chr21 34004815 34004932 -10902638 - L2 LINE L2 -23 3249 3116 246 301 48 10 chr21 34005160 34005263 -10902307 - MER5B DNA MER1_type 0 178 72 401 319 136 45 chr21 34006596 34007170 -10900400 + L2 LINE L2 2132 2757 -557 319 290 105 82 chr21 34007205 34007563 -10900007 + L2 LINE L2 2826 3197 -75 3063 68 7 5 chr21 34007563 34007975 -10899595 - L1PA8 LINE L1 0 6172 5760 319 290 105 82 chr21 34007975 34008043 -10899527 + L2 LINE L2 3197 3262 -10 427 291 11 26 chr21 34008492 34008681 -10898889 + MER5A DNA MER1_type 4 189 0 492 266 102 119 chr21 34008807 34009285 -10898285 - MLT1J LTR MaLR -40 471 2 219 241 0 37 chr21 34009287 34009341 -10898229 + G-rich Low_complexity Low_complexity 4 55 0 299 248 152 19 chr21 34011928 34012033 -10895537 + L2 LINE L2 3183 3301 -12 561 267 77 32 chr21 34012210 34012431 -10895139 + MIR SINE MIR 4 234 -28 267 112 92 0 chr21 34012726 34012824 -10894746 + (TA)n Simple_repeat Simple_repeat 1 107 0 260 96 27 68 chr21 34012875 34012890 -10894680 + (TA)n Simple_repeat Simple_repeat 1 15 -55 725 193 0 0 chr21 34012890 34013076 -10894494 + FLAM_C SINE Alu 1 186 0 260 96 27 68 chr21 34013076 34013132 -10894438 + (TA)n Simple_repeat Simple_repeat 15 70 0 471 261 8 42 chr21 34013424 34013543 -10894027 - L2 LINE L2 -8 3305 3191 25 0 0 0 chr21 34014126 34014151 -10893419 + AT_rich Low_complexity Low_complexity 1 25 0 794 268 45 0 chr21 34014473 34014760 -10892810 + L1ME3A LINE L1 4981 5280 -866 1644 188 13 16 chr21 34014762 34015070 -10892500 + AluJo SINE Alu 1 307 -5 258 105 0 0 chr21 34015070 34015108 -10892462 + (GGA)n Simple_repeat Simple_repeat 2 39 0 2428 230 45 44 chr21 34015116 34015430 -10892140 + L1ME3A LINE L1 5273 5585 -585 998 197 5 0 chr21 34015430 34015618 -10891952 + MER5A DNA MER1_type 1 189 0 2428 230 45 44 chr21 34015618 34015767 -10891803 + L1ME3A LINE L1 5585 5732 -438 2497 94 37 3 chr21 34015767 34016119 -10891451 + THE1B LTR MaLR 1 364 0 2428 230 45 44 chr21 34016119 34016518 -10891052 + L1ME3A LINE L1 5732 6137 -33 198 0 0 0 chr21 34017011 34017033 -10890537 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 374 103 17 0 chr21 34017184 34017242 -10890328 - THE1C LTR MaLR 0 375 317 20520 28 3 4 chr21 34017242 34018793 -10888777 + L1P1 LINE L1 2780 4324 -1831 2704 26 0 3 chr21 34018793 34019104 -10888466 - AluY SINE Alu -1 310 1 20520 28 3 4 chr21 34019104 34020305 -10887265 + L1P1 LINE L1 4324 5525 -630 550 215 14 69 chr21 34020305 34020449 -10887121 - MER58A DNA MER1_type 0 145 10 954 98 0 0 chr21 34021517 34021649 -10885921 + Alu SINE Alu 173 304 -6 539 357 65 6 chr21 34022769 34023091 -10884479 + LTR67 LTR ERVL 38 378 -179 316 301 65 79 chr21 34023342 34023431 -10884139 - L1MEc LINE L1 -4260 2347 2258 2432 104 0 0 chr21 34023431 34023738 -10883832 - AluSq SINE Alu -6 307 1 316 301 65 79 chr21 34023738 34023940 -10883630 - L1MEc LINE L1 -4349 2258 2060 229 308 107 27 chr21 34023987 34024211 -10883359 - L1MEc LINE L1 -4643 1964 1723 2274 65 3 0 chr21 34024280 34024574 -10882996 - L1PA8 LINE L1 -14 6158 5864 2471 44 0 0 chr21 34024575 34024891 -10882679 + L1PA8 LINE L1 5543 5858 -314 448 286 99 42 chr21 34024898 34025004 -10882566 - L1MEc LINE L1 -4943 1483 1384 1775 148 28 3 chr21 34025004 34025288 -10882282 - AluJb SINE Alu -21 291 1 448 286 99 42 chr21 34025288 34025464 -10882106 - L1MEc LINE L1 -5042 1384 1185 287 274 71 14 chr21 34025474 34025686 -10881884 - L1MEc LINE L1 -5119 1297 1074 1264 179 5 9 chr21 34025686 34025910 -10881660 - AluJo SINE Alu -6 306 84 653 188 36 0 chr21 34025995 34026107 -10881463 + FRAM SINE Alu 36 151 -25 28 0 0 0 chr21 34028509 34028537 -10879033 + AT_rich Low_complexity Low_complexity 1 28 0 2104 86 26 23 chr21 34028622 34028924 -10878646 + AluY SINE Alu 1 303 -8 1777 180 3 0 chr21 34028935 34029224 -10878346 + AluJb SINE Alu 1 290 -22 451 283 12 48 chr21 34029773 34029939 -10877631 - MIR SINE MIR -40 222 63 363 84 56 0 chr21 34030353 34030424 -10877146 - MER96B DNA MER1_type? -238 179 105 444 167 0 0 chr21 34030431 34030497 -10877073 + AluJ/FLAM SINE Alu 1 66 -246 466 260 23 34 chr21 34030497 34030674 -10876896 + L1 LINE L1 2800 2974 -3172 9122 169 32 4 chr21 34030686 34034778 -10872792 + L1PBa LINE L1 6 4448 -2414 2894 53 3 3 chr21 34034778 34035133 -10872437 - THE1A LTR MaLR 0 355 1 9122 169 32 4 chr21 34035133 34035570 -10872000 + L1PBa LINE L1 4448 4871 -1991 959 241 23 9 chr21 34035823 34036043 -10871527 - MER58A DNA MER1_type 0 224 2 180 0 0 0 chr21 34036726 34036746 -10870824 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2318 91 3 0 chr21 34036752 34037039 -10870531 - AluSp SINE Alu -25 288 1 252 246 36 64 chr21 34037116 34037200 -10870370 + MIR SINE MIR 91 173 -89 1534 188 62 75 chr21 34037200 34037669 -10869901 + MLT1C LTR MaLR 1 463 -4 252 246 36 64 chr21 34037669 34037694 -10869876 + MIR SINE MIR 173 197 -65 505 277 27 43 chr21 34037785 34037811 -10869759 - MIR SINE MIR -12 250 225 2191 179 47 5 chr21 34037811 34038218 -10869352 - MSTB LTR MaLR -2 424 1 505 277 27 43 chr21 34038218 34038375 -10869195 - MIR SINE MIR -37 225 70 415 281 188 37 chr21 34038621 34038669 -10868901 + LTR16A LTR ERVL 7 46 -404 5109 89 14 3 chr21 34038669 34039403 -10868167 + L1PA14 LINE L1 5420 6161 0 415 281 188 37 chr21 34039403 34039731 -10867839 + LTR16A LTR ERVL 46 440 -10 2121 122 0 0 chr21 34041990 34042286 -10865284 + AluSx SINE Alu 1 296 -16 2307 105 0 0 chr21 34042592 34042886 -10864684 + AluSg SINE Alu 1 294 -16 603 151 0 0 chr21 34042803 34042896 -10864674 + AluSg/x SINE Alu 212 304 -6 21 0 0 0 chr21 34043053 34043074 -10864496 + AT_rich Low_complexity Low_complexity 1 21 0 396 137 41 0 chr21 34043126 34043199 -10864371 + L1MA3 LINE L1 6230 6305 0 21 36 0 0 chr21 34043324 34043352 -10864218 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 34043932 34043953 -10863617 + AT_rich Low_complexity Low_complexity 1 21 0 281 288 75 27 chr21 34044608 34044754 -10862816 + L1M4 LINE L1 3685 3837 -2309 1201 153 0 59 chr21 34046199 34046421 -10861149 - AluJo SINE Alu -17 295 87 2166 119 3 25 chr21 34046429 34046749 -10860821 - AluSq SINE Alu 0 313 1 2273 119 0 0 chr21 34049515 34049818 -10857752 - AluSx SINE Alu -7 305 3 1712 236 72 14 chr21 34050351 34050777 -10856793 + MLT2B1 LTR ERVL 1 460 -60 261 0 0 0 chr21 34050777 34050806 -10856764 + (TG)n Simple_repeat Simple_repeat 2 30 0 1712 236 72 14 chr21 34050806 34050863 -10856707 + MLT2B1 LTR ERVL 460 512 -8 29 0 0 0 chr21 34051008 34051037 -10856533 + AT_rich Low_complexity Low_complexity 1 29 0 193 213 0 21 chr21 34051662 34051709 -10855861 + MER5A DNA MER1_type 144 189 0 321 133 0 0 chr21 34051717 34051762 -10855808 + MLT1A1 LTR MaLR 1 45 -329 1710 174 3 3 chr21 34051764 34052046 -10855524 + AluJo SINE Alu 1 282 -30 1900 156 51 15 chr21 34052153 34052486 -10855084 + MLT1A1 LTR MaLR 21 365 0 36 62 0 0 chr21 34053245 34053309 -10854261 + AT_rich Low_complexity Low_complexity 1 64 0 459 338 72 27 chr21 34053408 34053896 -10853674 + L2 LINE L2 2381 2890 -424 2218 181 40 32 chr21 34054047 34054545 -10853025 + MLT1D LTR MaLR 4 505 0 558 288 26 30 chr21 34054603 34054836 -10852734 + MIR SINE MIR 15 246 -16 355 344 60 20 chr21 34054856 34055007 -10852563 + L2 LINE L2 3116 3272 0 3372 92 11 2 chr21 34055647 34056094 -10851476 + MLT2A2 LTR ERVL 1 451 -2 2244 101 7 3 chr21 34056569 34056867 -10850703 + AluSq SINE Alu 1 299 -14 191 146 24 0 chr21 34057480 34057521 -10850049 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr21 34058213 34058236 -10849334 + AT_rich Low_complexity Low_complexity 1 23 0 1300 154 5 0 chr21 34058238 34058439 -10849131 - AluJb SINE Alu -53 259 58 348 190 0 0 chr21 34058586 34058644 -10848926 - AluJb SINE Alu -244 58 1 2215 88 32 0 chr21 34060007 34060291 -10847279 - AluSx SINE Alu -15 297 5 1700 87 4 49 chr21 34060732 34060996 -10846574 - L1PA8A LINE L1 -181 5950 5699 1133 107 0 0 chr21 34060996 34061153 -10846417 + L1PA8 LINE L1 6014 6172 0 2344 114 0 0 chr21 34061182 34061489 -10846081 + AluSg SINE Alu 1 307 -3 3968 56 4 0 chr21 34062350 34062847 -10844723 + L1PB1 LINE L1 5294 5792 -359 309 169 0 0 chr21 34062858 34062917 -10844653 + (TG)n Simple_repeat Simple_repeat 2 60 0 2650 99 3 0 chr21 34062921 34063286 -10844284 + L1PB1 LINE L1 5783 6148 -3 22 0 0 0 chr21 34063287 34063309 -10844261 + AT_rich Low_complexity Low_complexity 1 22 0 588 284 50 25 chr21 34063493 34063732 -10843838 + LTR16A LTR ERVL 18 262 -188 1064 296 115 42 chr21 34063869 34063952 -10843618 + HERV16 LTR ERVL 43 119 -4877 1540 173 30 8 chr21 34063952 34064218 -10843352 + AluJo SINE Alu 35 306 -6 1064 296 115 42 chr21 34064218 34064769 -10842801 + HERV16 LTR ERVL 119 723 -4273 666 147 9 9 chr21 34065045 34065154 -10842416 - MLT1B LTR MaLR 0 467 359 290 133 3 17 chr21 34065154 34065214 -10842356 - MLT2B2 LTR ERVL -2 552 458 396 122 44 50 chr21 34065244 34065425 -10842145 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2665 162 24 22 chr21 34065454 34065948 -10841622 - MLT2B2 LTR ERVL -20 495 1 2141 98 16 23 chr21 34065967 34066274 -10841296 - AluSx SINE Alu -5 307 3 1410 142 20 20 chr21 34066275 34066522 -10841048 - MLT1B LTR MaLR -114 276 30 977 293 46 7 chr21 34066568 34066875 -10840695 + HERV16 LTR ERVL 1033 1351 -3645 301 293 12 0 chr21 34067113 34067195 -10840375 + HERV16 LTR ERVL 1688 1770 -3226 4702 63 3 0 chr21 34067308 34067878 -10839692 + THE1C-int LTR MaLR 1009 1580 0 2015 118 76 28 chr21 34067878 34068234 -10839336 + THE1C LTR MaLR 1 373 -2 2333 298 67 35 chr21 34068254 34069515 -10838055 + HERV16 LTR ERVL 2155 3087 -1909 394 257 76 0 chr21 34069534 34069639 -10837931 + HERV16 LTR ERVL 3231 3343 -1653 298 295 42 54 chr21 34069912 34070078 -10837492 - MER5A DNA MER1_type -6 183 20 650 251 92 5 chr21 34070164 34070359 -10837211 - MIR SINE MIR -49 213 2 1617 138 46 19 chr21 34070858 34071118 -10836452 - AluJb SINE Alu -15 297 31 2166 138 0 0 chr21 34071621 34071926 -10835644 - AluSx SINE Alu -7 305 1 2274 109 8 88 chr21 34071956 34072352 -10835218 + THE1B LTR MaLR 1 364 0 1624 201 29 3 chr21 34072392 34072706 -10834864 + L1MB5 LINE L1 5845 6166 -8 495 0 0 0 chr21 34072711 34072766 -10834804 + (TG)n Simple_repeat Simple_repeat 2 56 0 2276 196 36 48 chr21 34072863 34073384 -10834186 + MLT2B3 LTR ERVL 1 515 -39 495 166 13 32 chr21 34073389 34073546 -10834024 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 408 288 68 0 chr21 34073562 34073694 -10833876 - HERV16 LTR ERVL -2545 2451 2311 445 121 0 30 chr21 34073717 34073816 -10833754 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 274 308 77 0 chr21 34076039 34076156 -10831414 + L2 LINE L2 2918 3043 -229 421 249 147 89 chr21 34076264 34076646 -10830924 - MLT1L LTR MaLR -130 485 82 778 145 0 0 chr21 34076677 34076794 -10830776 + FLAM_C SINE Alu 13 129 -14 3204 104 16 11 chr21 34077242 34077693 -10829877 + MLT2A2 LTR ERVL 1 453 0 180 346 147 6 chr21 34077713 34077869 -10829701 + MIR3 SINE MIR 7 184 -24 1666 202 36 55 chr21 34077870 34078340 -10829230 - MLT1C LTR MaLR -1 466 6 1968 107 25 82 chr21 34078427 34078745 -10828825 - AluSx SINE Alu -9 303 4 198 103 0 0 chr21 34078745 34078774 -10828796 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr21 34079664 34079685 -10827885 + AT_rich Low_complexity Low_complexity 1 21 0 2406 93 3 0 chr21 34081554 34081854 -10825716 - AluSx SINE Alu -11 301 1 1909 202 37 22 chr21 34082131 34082587 -10824983 + MLT1C LTR MaLR 1 463 -4 866 241 138 0 chr21 34082597 34082829 -10824741 + ORSL DNA AcHobo 12 275 0 479 243 34 20 chr21 34083803 34083951 -10823619 + MER103 DNA DNA 15 164 -2 288 304 89 9 chr21 34084652 34084764 -10822806 + MIR3 SINE MIR 86 206 -2 258 32 0 0 chr21 34085963 34085994 -10821576 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 214 338 15 0 chr21 34085996 34086064 -10821506 - L2 LINE L2 -15 3298 3230 1674 125 88 6 chr21 34086740 34087118 -10820452 + L1MA2 LINE L1 5861 6305 0 23 0 0 0 chr21 34087118 34087141 -10820429 + AT_rich Low_complexity Low_complexity 1 23 0 310 351 14 7 chr21 34087198 34087346 -10820224 - L2 LINE L2 -941 2373 2225 1703 180 20 3 chr21 34087671 34087971 -10819599 + AluJo SINE Alu 3 307 -5 372 356 68 0 chr21 34087973 34088150 -10819420 - MER5A DNA MER1_type 0 189 1 191 311 49 33 chr21 34088369 34088491 -10819079 + MER5A DNA MER1_type 66 189 0 2649 119 30 2 chr21 34089325 34089752 -10817818 + L1MA2 LINE L1 5859 6297 -7 487 188 26 0 chr21 34090223 34090378 -10817192 + GA-rich Low_complexity Low_complexity 1 159 0 227 298 93 60 chr21 34090411 34090562 -10817008 - L2 LINE L2 0 3272 3117 462 326 7 0 chr21 34091035 34091170 -10816400 + L2 LINE L2 3134 3269 -3 303 355 26 7 chr21 34091258 34091413 -10816157 + MIR3 SINE MIR 42 199 -9 1906 143 3 7 chr21 34093665 34093965 -10813605 + AluJb SINE Alu 14 312 0 1243 250 56 62 chr21 34093982 34094669 -10812901 + L1MC5 LINE L1 6877 7528 -433 6791 58 7 0 chr21 34094902 34095747 -10811823 - L1PA6 LINE L1 0 6154 5304 1687 194 3 3 chr21 34096485 34096795 -10810775 + AluJo SINE Alu 1 310 -2 2344 80 0 20 chr21 34096899 34097200 -10810370 + AluSq SINE Alu 1 295 -18 465 238 44 44 chr21 34097374 34097534 -10810036 + MIR SINE MIR 99 258 -4 1037 212 56 58 chr21 34097584 34097926 -10809644 - MER74C LTR ERVL -30 528 111 2322 107 32 59 chr21 34097926 34098300 -10809270 - THE1B LTR MaLR 0 364 1 1037 212 56 58 chr21 34098300 34098408 -10809162 - MER74C LTR ERVL -447 111 4 3053 147 42 54 chr21 34098418 34098706 -10808864 - L1MB5 LINE L1 -12 6162 5872 1885 216 29 16 chr21 34098706 34099091 -10808479 + MLT1B LTR MaLR 1 390 0 3053 147 42 54 chr21 34099091 34099395 -10808175 - L1MB5 LINE L1 -302 5872 5577 241 68 45 0 chr21 34100324 34100368 -10807202 + CT-rich Low_complexity Low_complexity 1 46 0 229 254 15 30 chr21 34100877 34100944 -10806626 + MIR SINE MIR 17 82 -180 552 291 199 46 chr21 34101681 34102335 -10805235 + L2 LINE L2 2224 2977 -337 455 299 0 0 chr21 34102531 34102648 -10804922 + L2 LINE L2 3180 3296 -17 192 77 0 0 chr21 34102654 34102680 -10804890 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 756 218 30 30 chr21 34102755 34102920 -10804650 + FAM SINE Alu 1 165 -10 2069 117 0 3 chr21 34103217 34103523 -10804047 + AluSx SINE Alu 1 305 0 207 139 0 0 chr21 34104648 34104684 -10802886 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 248 274 32 0 chr21 34104914 34104976 -10802594 - L2 LINE L2 -3 3310 3247 7076 63 31 1 chr21 34105310 34106242 -10801328 + L1PA8 LINE L1 5213 6171 -1 185 282 61 111 chr21 34106386 34106666 -10800904 - L2 LINE L2 -163 3109 2844 188 295 108 65 chr21 34106746 34106885 -10800685 - L2 LINE L2 -604 2710 2566 688 254 109 38 chr21 34106894 34107241 -10800329 + MLT1J1 LTR MaLR 74 445 -1 260 371 61 10 chr21 34107250 34107544 -10800026 - L2 LINE L2 -735 2579 2271 23 0 0 0 chr21 34107674 34107697 -10799873 + AT_rich Low_complexity Low_complexity 1 23 0 224 272 140 37 chr21 34107747 34107883 -10799687 + MIR SINE MIR 48 197 -65 632 240 62 28 chr21 34107984 34108163 -10799407 - MIR SINE MIR -42 220 36 316 243 27 0 chr21 34109664 34109738 -10797832 - MIR3 SINE MIR -54 154 79 1591 226 73 23 chr21 34109833 34110356 -10797214 + L1M4 LINE L1 4185 4733 -1413 1630 127 31 65 chr21 34110379 34110625 -10796945 - L1MA7 LINE L1 0 6291 6059 2060 104 0 0 chr21 34110625 34110884 -10796686 - AluSx SINE Alu -11 301 43 1630 127 31 65 chr21 34110884 34110991 -10796579 - L1MA7 LINE L1 -232 6059 5950 363 331 7 7 chr21 34110999 34111147 -10796423 - L1M3d LINE L1 -5741 150 3 2361 167 27 75 chr21 34111478 34111958 -10795612 + LTR32 LTR ERVL 15 471 0 526 278 31 81 chr21 34112072 34112295 -10795275 + L3 LINE CR1 1360 1571 -6 789 233 71 14 chr21 34112313 34112523 -10795047 + MIR SINE MIR 41 262 0 22 0 0 0 chr21 34112764 34112786 -10794784 + AT_rich Low_complexity Low_complexity 1 22 0 184 357 24 24 chr21 34113421 34113505 -10794065 - L3 LINE CR1 -115 1462 1379 430 250 12 0 chr21 34113519 34113603 -10793967 + MER33 DNA MER1_type 1 85 -239 1909 157 15 9 chr21 34113603 34113941 -10793629 + L1PA8A LINE L1 2605 2944 -3202 7576 128 24 65 chr21 34113942 34115936 -10791634 + L1PA8A LINE L1 4127 6032 -99 699 177 177 5 chr21 34115953 34116162 -10791408 + MER33 DNA MER1_type 108 352 -11 220 205 84 36 chr21 34116195 34116278 -10791292 + MER5A DNA MER1_type 103 189 0 226 311 0 0 chr21 34116332 34116393 -10791177 + MIR3 SINE MIR 99 159 -49 21 0 0 0 chr21 34122181 34122202 -10785368 + AT_rich Low_complexity Low_complexity 1 21 0 2062 121 7 3 chr21 34124166 34124456 -10783114 + AluSc SINE Alu 6 296 -13 436 361 30 22 chr21 34124815 34125045 -10782525 + MIR SINE MIR 17 248 -14 455 193 59 8 chr21 34125323 34125442 -10782128 + MLT1C LTR MaLR 2 126 -264 662 62 0 0 chr21 34125443 34125524 -10782046 - L1PB1 LINE L1 -182 5969 5889 1083 140 0 0 chr21 34125527 34125691 -10781879 + L1PB1 LINE L1 5988 6151 0 736 213 14 18 chr21 34125702 34126015 -10781555 + MLT1C LTR MaLR 112 463 -4 683 267 11 0 chr21 34126091 34126267 -10781303 + MER63A DNA MER1_type 13 190 -20 1168 214 14 0 chr21 34127015 34127230 -10780340 + MER20 DNA MER1_type 1 218 -1 1989 176 60 79 chr21 34127368 34127591 -10779979 - MER97a DNA MER1_type? -57 837 611 6674 77 22 30 chr21 34127591 34127845 -10779725 + L1PA10 LINE L1 4879 5134 -1034 6782 52 16 37 chr21 34127845 34128768 -10778802 + SVA Other Other 483 1386 0 6674 77 22 30 chr21 34128768 34129333 -10778237 + L1PA10 LINE L1 5134 5683 -485 2444 80 0 0 chr21 34129333 34129635 -10777935 + AluY SINE Alu 2 303 -8 6674 77 22 30 chr21 34129635 34130115 -10777455 + L1PA10 LINE L1 5683 6166 -2 1989 176 60 79 chr21 34130115 34130437 -10777133 - MER97a DNA MER1_type? -283 611 302 650 219 20 20 chr21 34130450 34130596 -10776974 - MLT1F LTR MaLR -396 146 1 933 112 49 98 chr21 34131766 34131990 -10775580 + L1MA10 LINE L1 6115 6327 -7 8714 78 1 2 chr21 34132141 34134024 -10773546 + L1PA7 LINE L1 4265 6147 -7 21 36 0 0 chr21 34134024 34134052 -10773518 + AT_rich Low_complexity Low_complexity 1 28 0 180 200 0 0 chr21 34134266 34134311 -10773259 + (TG)n Simple_repeat Simple_repeat 2 46 0 182 301 135 58 chr21 34134681 34134993 -10772577 - L2 LINE L2 -1123 2191 1856 230 381 0 12 chr21 34136112 34136196 -10771374 + L3b LINE CR1 1370 1452 -131 2352 99 10 0 chr21 34137342 34137646 -10769924 + AluSx SINE Alu 1 307 -5 1911 146 25 0 chr21 34138151 34138431 -10769139 - AluSx SINE Alu -23 289 3 546 286 138 5 chr21 34139103 34139320 -10768250 - MIR SINE MIR -3 259 14 506 200 58 84 chr21 34140163 34140318 -10767252 + L2 LINE L2 3162 3312 -1 2710 123 0 3 chr21 34140470 34140835 -10766735 + THE1B LTR MaLR 1 364 0 260 298 168 46 chr21 34141459 34141721 -10765849 - L3 LINE CR1 -336 1241 948 667 283 95 32 chr21 34142282 34142494 -10765076 + MLT1J2 LTR MaLR 1 237 -213 2407 159 56 7 chr21 34142494 34142902 -10764668 - MSTA LTR MaLR 0 428 1 667 283 95 32 chr21 34142902 34142972 -10764598 + MLT1J2 LTR MaLR 237 301 -149 247 195 117 26 chr21 34142983 34143060 -10764510 + MLT1J2 LTR MaLR 365 448 -2 1199 296 72 10 chr21 34143133 34143620 -10763950 - LTR33 LTR ERVL -4 517 1 557 333 98 24 chr21 34144082 34144590 -10762980 + HAL1 LINE L1 1217 1762 -745 3346 121 26 46 chr21 34144977 34145592 -10761978 - MER4B LTR ERV1 0 779 1 2764 96 11 16 chr21 34145694 34146071 -10761499 - THE1C LTR MaLR 0 375 1 712 333 55 21 chr21 34146143 34146702 -10760868 + L1MC1 LINE L1 3631 4208 -1938 397 272 0 0 chr21 34146812 34146926 -10760644 - L1M4 LINE L1 -1090 5056 4943 260 208 0 0 chr21 34147085 34147133 -10760437 + MER5B DNA MER1_type 78 125 -53 808 281 108 26 chr21 34147207 34147926 -10759644 + L1MC1 LINE L1 4525 5302 -844 240 111 0 0 chr21 34147927 34147963 -10759607 + (TA)n Simple_repeat Simple_repeat 2 37 0 1384 193 87 4 chr21 34147963 34148227 -10759343 - AluJb SINE Alu -26 286 1 363 182 0 0 chr21 34148305 34148382 -10759188 + (CA)n Simple_repeat Simple_repeat 1 77 0 350 300 120 36 chr21 34148382 34148751 -10758819 + L1MC1 LINE L1 5360 5785 -2023 574 282 29 6 chr21 34149145 34149319 -10758251 + MIR SINE MIR 52 229 -33 611 266 108 14 chr21 34149333 34149704 -10757866 - MLT1F LTR MaLR -24 571 95 686 267 283 33 chr21 34150398 34150889 -10756681 + L3 LINE CR1 782 1395 -182 221 273 0 18 chr21 34150897 34150952 -10756618 - MER5B DNA MER1_type -8 170 117 4408 61 14 33 chr21 34150952 34151526 -10756044 + L1PA13 LINE L1 5590 6152 -11 306 294 25 25 chr21 34151565 34151684 -10755886 + MER5B DNA MER1_type 49 167 -11 1650 201 7 0 chr21 34153148 34153452 -10754118 + L1MC1 LINE L1 6022 6327 -6 428 261 6 115 chr21 34153616 34153720 -10753850 + L2 LINE L2 2919 3002 -311 2208 115 3 0 chr21 34153720 34154015 -10753555 - AluSx SINE Alu -12 300 5 428 261 6 115 chr21 34154015 34154067 -10753503 + L2 LINE L2 3002 3058 -255 360 248 126 56 chr21 34154125 34154474 -10753096 + MLT1H LTR MaLR 23 364 -45 343 165 38 26 chr21 34156118 34156415 -10751155 + (TTAA)n Simple_repeat Simple_repeat 1 300 0 24 0 0 0 chr21 34156415 34156439 -10751131 + AT_rich Low_complexity Low_complexity 1 24 0 1547 161 0 54 chr21 34156988 34157268 -10750302 + AluJo SINE Alu 1 265 -47 2228 116 0 3 chr21 34158455 34158757 -10748813 + AluSc SINE Alu 1 301 -8 360 281 61 18 chr21 34158857 34159021 -10748549 + LTR33 LTR ERVL 29 199 -322 448 225 78 68 chr21 34159148 34159339 -10748231 + LTR33A LTR ERVL 329 521 -2 1793 122 70 31 chr21 34159464 34159751 -10747819 + AluSg SINE Alu 5 302 -8 979 168 0 0 chr21 34159805 34159954 -10747616 + AluJb SINE Alu 140 288 -24 2363 71 3 7 chr21 34160946 34161241 -10746329 + AluSp SINE Alu 1 294 -19 343 314 76 11 chr21 34161298 34161483 -10746087 - MLT1J LTR MaLR 0 511 315 286 289 115 0 chr21 34161536 34161640 -10745930 - MLT1J LTR MaLR -321 190 75 181 222 0 0 chr21 34161722 34161767 -10745803 + L2 LINE L2 3269 3313 0 2248 113 0 7 chr21 34163019 34163321 -10744249 + AluSx SINE Alu 1 300 -12 212 361 108 19 chr21 34165002 34165215 -10742355 + L2 LINE L2 2887 3118 -154 638 259 69 16 chr21 34165356 34165545 -10742025 + L2 LINE L2 3108 3306 -7 2185 120 13 0 chr21 34166008 34166309 -10741261 + AluSq SINE Alu 1 305 -8 1651 174 103 41 chr21 34166313 34166680 -10740890 + MLT1B LTR MaLR 1 390 0 239 255 53 11 chr21 34166684 34166778 -10740792 - L1ME4a LINE L1 -32 6089 5992 22 0 0 0 chr21 34166891 34166913 -10740657 + AT_rich Low_complexity Low_complexity 1 22 0 2937 180 17 4 chr21 34167196 34167724 -10739846 + L1MD3 LINE L1 7449 7983 -12 486 244 67 15 chr21 34168201 34168336 -10739234 - MER58B DNA MER1_type -2 339 198 1080 218 12 24 chr21 34168632 34168884 -10738686 + MLT2D LTR ERVL 2 250 -164 404 251 212 33 chr21 34169517 34169936 -10737634 + L1ME4a LINE L1 5628 6121 0 266 307 68 0 chr21 34170753 34170841 -10736729 - L2 LINE L2 -5 3308 3215 320 0 25 0 chr21 34171361 34171401 -10736169 + (TG)n Simple_repeat Simple_repeat 2 42 0 284 261 12 43 chr21 34172543 34172704 -10734866 + (CA)n Simple_repeat Simple_repeat 1 156 0 356 213 0 86 chr21 34172735 34172987 -10734583 + (CA)n Simple_repeat Simple_repeat 1 230 0 182 179 0 77 chr21 34174115 34174154 -10733416 + L2 LINE L2 3226 3261 -11 394 275 133 14 chr21 34174202 34174420 -10733150 + MIR SINE MIR 2 245 -17 664 201 84 109 chr21 34174448 34174530 -10733040 - MIR SINE MIR -22 240 157 2160 134 0 0 chr21 34174530 34174822 -10732748 - AluSx SINE Alu -20 292 1 664 201 84 109 chr21 34174822 34174978 -10732592 - MIR SINE MIR -105 157 8 1211 211 63 66 chr21 34174982 34175346 -10732224 + MLT1A1 LTR MaLR 3 365 0 814 205 100 49 chr21 34175841 34176052 -10731518 + MLT1B LTR MaLR 1 239 -228 1929 162 0 3 chr21 34176052 34176361 -10731209 + AluJo SINE Alu 1 308 -4 814 205 100 49 chr21 34176361 34176484 -10731086 + MLT1B LTR MaLR 239 354 -113 734 168 8 8 chr21 34177122 34177241 -10730329 - FLAM_A SINE Alu -14 119 1 235 275 0 25 chr21 34177849 34177929 -10729641 + L1ME4a LINE L1 5828 5905 -216 293 164 0 0 chr21 34178041 34178102 -10729468 + L1ME4a LINE L1 6061 6121 0 1700 163 3 59 chr21 34179527 34179822 -10727748 + AluJo SINE Alu 5 284 -28 321 118 0 0 chr21 34179822 34179873 -10727697 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 1581 219 70 27 chr21 34180790 34181233 -10726337 - MLT1C LTR MaLR 0 467 6 1945 130 42 0 chr21 34182204 34182489 -10725081 + AluSq SINE Alu 1 297 -16 909 132 0 22 chr21 34184830 34184966 -10722604 - FLAM_C SINE Alu 0 133 1 706 278 107 45 chr21 34185085 34185441 -10722129 + L2 LINE L2 2919 3296 -17 773 157 182 19 chr21 34185766 34185925 -10721645 + MER45 DNA AcHobo 1 185 -855 652 172 9 9 chr21 34185935 34186051 -10721519 + MER45 DNA AcHobo 1466 1581 0 2272 83 23 3 chr21 34186760 34187060 -10720510 + MLT2A1 LTR ERVL 1 306 -138 229 65 0 0 chr21 34187073 34187119 -10720451 - LTR66 LTR ERVL -171 439 394 326 149 30 0 chr21 34187119 34187186 -10720384 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 315 98 78 0 chr21 34187186 34187237 -10720333 + MLT2A1 LTR ERVL 399 453 0 225 313 0 0 chr21 34187327 34187391 -10720179 - Charlie8 DNA MER1_type -10 2407 2344 2216 133 0 0 chr21 34187433 34187735 -10719835 - AluSx SINE Alu -10 302 1 1497 178 81 30 chr21 34187844 34188192 -10719378 - MLT1A1 LTR MaLR -2 503 1 892 238 122 15 chr21 34188203 34188531 -10719039 - LTR16B LTR ERVL -101 363 1 815 303 96 45 chr21 34189464 34189755 -10717815 + L2 LINE L2 2404 2679 -593 1990 103 11 4 chr21 34189755 34190027 -10717543 + AluSx SINE Alu 24 297 -15 815 303 96 45 chr21 34190027 34190385 -10717185 + L2 LINE L2 2679 3017 -255 225 0 0 0 chr21 34190385 34190410 -10717160 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 273 57 0 0 chr21 34190409 34190444 -10717126 + (TA)n Simple_repeat Simple_repeat 1 35 0 815 303 96 45 chr21 34190410 34190595 -10716975 + L2 LINE L2 3017 3237 -35 495 0 0 0 chr21 34190604 34190659 -10716911 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 599 222 82 56 chr21 34190881 34191183 -10716387 - L1MC4a LINE L1 -323 5798 5759 1924 130 30 4 chr21 34191207 34191476 -10716094 - AluSx SINE Alu -27 285 10 527 257 104 11 chr21 34191534 34191717 -10715853 + MIR SINE MIR 14 213 -49 206 347 99 53 chr21 34191720 34191866 -10715704 + L2 LINE L2 2175 2313 -1001 2072 101 45 3 chr21 34191866 34192153 -10715417 - AluSx SINE Alu -13 299 1 206 347 99 53 chr21 34192153 34192553 -10715017 + L2 LINE L2 2313 2746 -568 231 143 24 0 chr21 34192741 34192783 -10714787 - L2 LINE L2 -2 3311 3269 480 295 8 8 chr21 34192784 34192913 -10714657 - HERVL LTR ERVL -2805 2959 2831 1098 195 14 14 chr21 34192919 34193129 -10714441 - MER20 DNA MER1_type 0 219 10 1414 297 66 75 chr21 34193146 34193926 -10713644 - HERVL LTR ERVL -2943 2821 1973 3289 106 64 135 chr21 34193926 34194585 -10712985 - LTR9 LTR ERV1 0 612 1 1414 297 66 75 chr21 34194585 34194773 -10712797 - HERVL LTR ERVL -3791 1973 1785 563 92 13 0 chr21 34194832 34194908 -10712662 - MADE1 DNA Mariner -3 77 1 537 319 42 76 chr21 34194938 34195277 -10712293 - HERVL LTR ERVL -3952 1812 1497 2059 121 44 0 chr21 34195277 34195574 -10711996 + AluSx SINE Alu 1 310 -2 537 319 42 76 chr21 34195574 34195833 -10711737 - HERVL LTR ERVL -4267 1497 1231 2362 91 0 0 chr21 34196913 34197221 -10710349 - AluSq SINE Alu -5 308 1 1477 154 3 75 chr21 34197814 34198120 -10709450 - AluJo SINE Alu 0 312 29 855 123 7 34 chr21 34198149 34198295 -10709275 + AluSq/x SINE Alu 3 144 -168 1786 141 10 17 chr21 34198295 34198594 -10708976 + AluSx SINE Alu 9 305 -7 276 30 0 0 chr21 34198997 34199030 -10708540 + (GA)n Simple_repeat Simple_repeat 1 33 0 46 54 0 0 chr21 34200067 34200141 -10707429 + AT_rich Low_complexity Low_complexity 1 74 0 1792 138 3 28 chr21 34200217 34200536 -10707034 + AluJb SINE Alu 1 312 0 890 134 42 7 chr21 34200579 34200721 -10706849 + MLT2C2 LTR ERVL 175 321 -143 307 339 78 63 chr21 34200944 34201079 -10706491 - L2 LINE L2 -1 3271 3140 2211 126 0 0 chr21 34201079 34201388 -10706182 + AluSx SINE Alu 1 309 -3 307 339 78 63 chr21 34201388 34201571 -10705999 - L2 LINE L2 -132 3140 2948 435 255 44 117 chr21 34201795 34201916 -10705654 + MLT1I LTR MaLR 73 201 -249 794 200 26 7 chr21 34201916 34202071 -10705499 + FRAM SINE Alu 2 159 -7 435 255 44 117 chr21 34202071 34202313 -10705257 + MLT1I LTR MaLR 201 448 -2 463 324 49 16 chr21 34202796 34202981 -10704589 + MIR SINE MIR 47 237 -25 792 289 181 25 chr21 34204094 34204537 -10703033 + L3 LINE CR1 958 1469 -108 967 92 8 0 chr21 34204732 34204863 -10702707 + L1PA10 LINE L1 6037 6168 0 2305 88 0 7 chr21 34205357 34205663 -10701907 - AluSx SINE Alu -7 305 2 225 0 0 0 chr21 34206134 34206159 -10701411 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1826 151 32 67 chr21 34207898 34208003 -10699567 + L1MA10 LINE L1 5938 6045 -289 2151 134 45 28 chr21 34208003 34208361 -10699209 + THE1B LTR MaLR 1 364 0 1826 151 32 67 chr21 34208361 34208616 -10698954 + L1MA10 LINE L1 6045 6285 -49 1668 150 10 20 chr21 34208616 34208922 -10698648 - AluJo SINE Alu -9 303 1 1826 151 32 67 chr21 34208922 34208964 -10698606 + L1MA10 LINE L1 6285 6327 -7 3875 180 40 63 chr21 34209191 34209300 -10698270 + MER63C DNA MER1_type 1 111 -949 1129 130 65 26 chr21 34209300 34209502 -10698068 - L1MA9 LINE L1 0 6312 6098 2113 188 14 3 chr21 34209502 34209863 -10697707 + MLT1A1 LTR MaLR 1 365 0 1129 130 65 26 chr21 34209863 34209891 -10697679 - L1MA9 LINE L1 -214 6098 6073 3875 180 40 63 chr21 34209891 34210500 -10697070 + MER63C DNA MER1_type 111 694 -366 2173 117 0 0 chr21 34210500 34210800 -10696770 + AluSq SINE Alu 1 300 -13 3875 180 40 63 chr21 34210800 34211028 -10696542 + MER63C DNA MER1_type 694 926 -4 1155 124 134 0 chr21 34211409 34211611 -10695959 - AluSg/x SINE Alu -4 308 80 180 328 38 38 chr21 34212658 34212789 -10694781 + L2 LINE L2 2892 3022 -250 294 285 32 8 chr21 34212847 34212970 -10694600 - MER117 DNA MER1_type -33 164 39 206 250 28 0 chr21 34212992 34213064 -10694506 + (TCTCTG)n Simple_repeat Simple_repeat 2 75 0 2027 132 3 3 chr21 34213154 34213457 -10694113 - AluSx SINE Alu -9 303 1 23 0 0 0 chr21 34213715 34213738 -10693832 + AT_rich Low_complexity Low_complexity 1 23 0 1598 190 30 3 chr21 34213911 34214206 -10693364 + LTR40c LTR ERVL 158 460 -5 1140 157 69 20 chr21 34214395 34214612 -10692958 - MER20 DNA MER1_type 0 219 2 255 318 221 13 chr21 34214845 34214999 -10692571 - MIR SINE MIR -71 191 6 1981 107 31 0 chr21 34215815 34216105 -10691465 + AluSq SINE Alu 1 299 -14 285 29 0 0 chr21 34216105 34216139 -10691431 + (TA)n Simple_repeat Simple_repeat 2 35 0 565 172 155 0 chr21 34216417 34216533 -10691037 - L2 LINE L2 0 3313 3180 595 219 71 60 chr21 34216570 34216753 -10690817 - MIR SINE MIR -50 212 28 24 0 0 0 chr21 34216995 34217019 -10690551 + AT_rich Low_complexity Low_complexity 1 24 0 2167 103 7 0 chr21 34217028 34217330 -10690240 + AluSx SINE Alu 1 304 -8 267 346 90 15 chr21 34218571 34218704 -10688866 + L2 LINE L2 3118 3260 -12 458 185 109 8 chr21 34218802 34218921 -10688649 + L1MD2 LINE L1 6229 6359 0 2221 109 0 3 chr21 34219860 34220171 -10687399 + AluSq SINE Alu 1 310 -3 2083 104 10 0 chr21 34220619 34220916 -10686654 + AluSx SINE Alu 1 300 -12 240 163 0 0 chr21 34220944 34220987 -10686583 - MIR SINE MIR -111 151 109 2066 112 7 3 chr21 34221595 34221898 -10685672 + AluSx SINE Alu 1 304 -8 2473 176 31 10 chr21 34222291 34222779 -10684791 - L1MB3 LINE L1 -15 6168 5671 357 281 11 0 chr21 34223099 34223367 -10684203 + (CA)n Simple_repeat Simple_repeat 1 271 0 320 279 17 0 chr21 34223395 34223567 -10684003 + (CA)n Simple_repeat Simple_repeat 1 175 0 349 275 6 22 chr21 34223602 34223826 -10683744 + (CA)n Simple_repeat Simple_repeat 1 220 0 268 306 6 6 chr21 34223921 34224101 -10683469 + (CA)n Simple_repeat Simple_repeat 1 180 0 203 261 8 39 chr21 34224232 34224362 -10683208 + (CACCT)n Simple_repeat Simple_repeat 1 126 0 270 306 6 0 chr21 34224432 34224605 -10682965 + (CA)n Simple_repeat Simple_repeat 2 175 0 1762 49 5 5 chr21 34226185 34226408 -10681162 - L1PB1 LINE L1 0 6151 5929 1083 157 5 39 chr21 34226440 34226644 -10680926 - MER3 DNA MER1_type -1 208 12 30 27 0 0 chr21 34226871 34226908 -10680662 + AT_rich Low_complexity Low_complexity 1 37 0 206 351 26 0 chr21 34227767 34227844 -10679726 - MIR SINE MIR -119 143 65 1727 140 10 7 chr21 34229182 34229474 -10678096 + AluSx SINE Alu 1 293 -19 357 289 60 54 chr21 34229487 34229708 -10677862 - MIR SINE MIR -40 222 3 369 240 50 22 chr21 34229916 34230062 -10677508 - MER5A DNA MER1_type -24 165 1 1561 177 99 33 chr21 34231642 34231860 -10675710 - MLT1B LTR MaLR -4 386 133 2195 89 17 0 chr21 34231860 34232151 -10675419 - AluSg SINE Alu -14 296 1 1561 177 99 33 chr21 34232151 34232294 -10675276 - MLT1B LTR MaLR -257 133 1 1679 171 3 10 chr21 34232343 34232642 -10674928 + AluJb SINE Alu 1 297 -15 803 59 0 0 chr21 34232643 34232791 -10674779 + AluY SINE Alu 181 328 0 2109 91 7 0 chr21 34233812 34234108 -10673462 - AluSp SINE Alu -3 310 13 302 325 79 0 chr21 34234692 34234806 -10672764 - L2 LINE L2 0 3313 3191 522 247 0 0 chr21 34234923 34235101 -10672469 + G-rich Low_complexity Low_complexity 1 178 0 306 269 0 0 chr21 34235123 34235257 -10672313 + G-rich Low_complexity Low_complexity 1 134 0 2287 107 54 12 chr21 34235272 34235608 -10671962 + MER48 LTR ERV1 38 387 0 1645 171 7 19 chr21 34236154 34236463 -10671107 + AluJo SINE Alu 1 305 -7 1950 113 31 7 chr21 34236943 34237236 -10670334 + AluSx SINE Alu 6 305 -7 677 259 0 0 chr21 34237281 34237428 -10670142 + AluJb SINE Alu 135 281 -31 491 258 45 8 chr21 34237456 34237588 -10669982 - MIR SINE MIR -103 159 23 21 36 0 0 chr21 34238507 34238535 -10669035 + AT_rich Low_complexity Low_complexity 1 28 0 1985 224 101 45 chr21 34239160 34239767 -10667803 - MLT1E1 LTR MaLR 0 654 14 512 286 128 13 chr21 34240144 34240371 -10667199 - MLT1L LTR MaLR -13 602 350 1694 199 72 7 chr21 34240475 34240906 -10666664 + L1MB7 LINE L1 3573 4031 -2115 6358 123 22 19 chr21 34240909 34241825 -10665745 - L1MA7 LINE L1 0 6291 5359 1992 124 7 7 chr21 34241825 34242131 -10665439 - AluSx SINE Alu -6 306 1 6358 123 22 19 chr21 34242131 34242433 -10665137 - L1MA7 LINE L1 -932 5359 5060 3404 150 46 73 chr21 34242425 34242947 -10664623 + L1MB7 LINE L1 4948 5483 -701 * 2156 118 0 0 chr21 34242947 34243244 -10664326 - AluSx SINE Alu -15 297 1 3404 150 46 73 chr21 34243244 34243873 -10663697 + L1MB7 LINE L1 5483 6164 -20 2286 84 0 7 chr21 34243873 34244169 -10663401 - AluSc SINE Alu -15 294 1 3404 150 46 73 chr21 34244169 34244189 -10663381 + L1MB7 LINE L1 6164 6183 -1 2115 99 0 0 chr21 34244553 34244864 -10662706 + AluSx SINE Alu 1 311 0 1632 159 14 17 chr21 34245679 34245975 -10661595 - AluJo SINE Alu -13 299 5 1001 184 26 66 chr21 34246742 34246923 -10660647 - MER58A DNA MER1_type -2198 222 50 2276 93 3 16 chr21 34246923 34247233 -10660337 + AluSx SINE Alu 1 306 -6 1001 184 26 66 chr21 34247233 34247279 -10660291 - MER58A DNA MER1_type -2370 50 4 2390 105 0 0 chr21 34247615 34247920 -10659650 + AluSx SINE Alu 3 307 -5 2181 121 0 16 chr21 34248875 34249182 -10658388 - AluSx SINE Alu -10 302 1 1894 143 0 45 chr21 34249572 34249886 -10657684 - AluJo SINE Alu -4 308 9 2145 124 7 0 chr21 34249996 34250286 -10657284 + AluSx SINE Alu 13 304 -8 991 176 0 33 chr21 34250436 34250618 -10656952 + FRAM SINE Alu 1 169 -7 1509 221 25 53 chr21 34250727 34251201 -10656369 + MLT1C LTR MaLR 6 466 -1 558 205 84 54 chr21 34251486 34251652 -10655918 - MER58B DNA MER1_type 0 341 171 2815 155 33 11 chr21 34251664 34252186 -10655384 + L1MB4 LINE L1 5645 6177 -3 2042 130 18 3 chr21 34252208 34252493 -10655077 - AluSx SINE Alu -23 289 1 198 323 16 0 chr21 34252856 34252918 -10654652 + MIR SINE MIR 70 132 -76 2270 114 3 0 chr21 34254009 34254307 -10653263 - AluSx SINE Alu -13 299 1 1733 171 4 7 chr21 34254517 34254798 -10652772 + AluJo SINE Alu 3 282 -30 409 184 35 105 chr21 34255600 34255644 -10651926 - MER5A DNA MER1_type -80 109 63 1985 95 26 52 chr21 34255644 34255656 -10651914 - AluSx SINE Alu -15 297 286 198 91 0 0 chr21 34255656 34255689 -10651881 + (TG)n Simple_repeat Simple_repeat 2 34 0 1985 95 26 52 chr21 34255689 34255981 -10651589 - AluSx SINE Alu -26 286 1 409 184 35 105 chr21 34255981 34256050 -10651520 - MER5A DNA MER1_type -126 63 4 1970 118 3 45 chr21 34256370 34256683 -10650887 + AluSx SINE Alu 1 300 -12 2432 77 3 0 chr21 34256705 34257002 -10650568 - AluSp SINE Alu -15 298 1 2045 160 0 7 chr21 34257007 34257314 -10650256 - AluSx SINE Alu -7 305 1 1722 93 64 119 chr21 34258052 34258364 -10649206 + AluSp SINE Alu 1 295 -18 2246 118 3 10 chr21 34259123 34259437 -10648133 + AluSx SINE Alu 1 312 0 575 210 70 6 chr21 34259539 34259696 -10647874 + MER5B DNA MER1_type 12 178 0 466 242 144 20 chr21 34260422 34260575 -10646995 + MIR SINE MIR 21 192 -70 198 0 0 0 chr21 34260634 34260656 -10646914 + (T)n Simple_repeat Simple_repeat 1 22 0 2405 140 32 67 chr21 34260673 34261137 -10646433 - MER83 LTR ERV1 0 448 1 1494 121 0 47 chr21 34261139 34261371 -10646199 - AluJo SINE Alu -45 267 47 2216 105 0 7 chr21 34261450 34261745 -10645825 - AluSc SINE Alu -16 293 1 21 0 0 0 chr21 34261751 34261772 -10645798 + AT_rich Low_complexity Low_complexity 1 21 0 1323 167 25 81 chr21 34264330 34264653 -10642917 - AluJo SINE Alu -3 309 5 252 266 51 0 chr21 34264919 34264998 -10642572 + MER58B DNA MER1_type 256 338 -3 1373 199 15 33 chr21 34266437 34266773 -10640797 - L1MB4 LINE L1 -1 6179 5850 3165 145 23 7 chr21 34266925 34267485 -10640085 + L1MA8 LINE L1 5722 6290 -1 2562 87 0 0 chr21 34267487 34267798 -10639772 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr21 34267799 34267820 -10639750 + AT_rich Low_complexity Low_complexity 1 21 0 2394 85 10 0 chr21 34267881 34268175 -10639395 + AluSq SINE Alu 1 297 -16 299 311 122 31 chr21 34269314 34269510 -10638060 - MIR SINE MIR -28 234 21 220 195 0 0 chr21 34269703 34269744 -10637826 + (CAAGA)n Simple_repeat Simple_repeat 2 42 0 2663 64 0 0 chr21 34271043 34271354 -10636216 + AluY SINE Alu 1 311 0 29 47 0 0 chr21 34272540 34272583 -10634987 + AT_rich Low_complexity Low_complexity 1 43 0 753 168 15 29 chr21 34272987 34273124 -10634446 + AluJo SINE Alu 2 136 -176 1922 157 7 0 chr21 34273145 34273438 -10634132 + AluSx SINE Alu 1 295 -17 246 263 18 0 chr21 34273537 34273594 -10633976 + L2 LINE L2 3244 3301 -12 700 197 7 0 chr21 34274281 34274423 -10633147 - LTR53 LTR ERVL -11 508 366 522 234 216 0 chr21 34274427 34274594 -10632976 - MER58C DNA MER1_type -2 213 11 518 289 31 0 chr21 34275205 34275333 -10632237 - L2 LINE L2 -3 3269 3138 682 272 34 29 chr21 34276577 34276783 -10630787 - MER3 DNA MER1_type 0 209 3 2027 144 7 3 chr21 34277139 34277437 -10630133 + AluSx SINE Alu 2 300 -12 212 211 35 18 chr21 34277715 34277772 -10629798 - MIR SINE MIR -27 235 178 1991 118 6 54 chr21 34277873 34278186 -10629384 + AluSg SINE Alu 1 298 -12 585 139 0 0 chr21 34278202 34278310 -10629260 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 1529 118 0 9 chr21 34278873 34279084 -10628486 - AluSq SINE Alu -4 309 101 2364 104 0 0 chr21 34279437 34279736 -10627834 + AluSx SINE Alu 1 299 -13 353 259 37 0 chr21 34279770 34279851 -10627719 + MIR3 SINE MIR 124 207 -1 333 118 88 0 chr21 34279880 34279948 -10627622 + L1ME2 LINE L1 6091 6164 0 421 105 88 3 chr21 34280114 34280194 -10627376 + L1MB2 LINE L1 6069 6158 -16 23 78 0 0 chr21 34282160 34282211 -10625359 + AT_rich Low_complexity Low_complexity 1 51 0 2189 113 0 35 chr21 34282429 34282740 -10624830 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr21 34282824 34282853 -10624717 + AT_rich Low_complexity Low_complexity 1 29 0 239 268 84 42 chr21 34282917 34282988 -10624582 - MIR3 SINE MIR -23 185 112 587 264 162 33 chr21 34283157 34283608 -10623962 + MLT1J LTR MaLR 1 509 -2 2087 145 3 0 chr21 34286718 34287021 -10620549 - AluJb SINE Alu -7 305 2 403 206 96 59 chr21 34287468 34287528 -10620042 - MER7A DNA MER2_type -2898 140 84 792 160 8 0 chr21 34287528 34287659 -10619911 + FLAM_C SINE Alu 1 132 -1 403 206 96 59 chr21 34287659 34287734 -10619836 - MER7A DNA MER2_type -2954 84 2 1071 233 137 17 chr21 34287740 34288097 -10619473 + L1M4 LINE L1 4581 4980 -1166 1639 143 52 68 chr21 34288382 34288690 -10618880 + AluJb SINE Alu 1 303 -9 1219 123 0 0 chr21 34288736 34288907 -10618663 + AluSg/x SINE Alu 135 305 -5 1498 67 0 0 chr21 34289368 34289577 -10617993 + AluSg/x SINE Alu 115 312 0 2199 95 26 7 chr21 34289578 34289884 -10617686 + AluSx SINE Alu 1 312 0 687 226 72 68 chr21 34291045 34291280 -10616290 + L1MC3 LINE L1 7072 7307 -478 1226 104 21 26 chr21 34291368 34291455 -10616115 + MER2 DNA MER2_type 1 87 -258 2111 161 88 5 chr21 34291455 34291866 -10615704 - MER65A LTR ERV1 0 445 1 1226 104 21 26 chr21 34291866 34291970 -10615600 + MER2 DNA MER2_type 87 191 -154 816 152 14 0 chr21 34291970 34292108 -10615462 - LTR5 LTR ERVK 0 969 830 2309 151 55 5 chr21 34292209 34292627 -10614943 + MER49 LTR ERV1 1 439 -484 1893 165 16 81 chr21 34292634 34292695 -10614875 + LTR19A LTR ERV1 12 75 -411 2263 89 0 0 chr21 34292695 34292999 -10614571 + AluY SINE Alu 1 304 0 1893 165 16 81 chr21 34292999 34293444 -10614126 + LTR19A LTR ERV1 75 486 0 1026 107 0 0 chr21 34293444 34293593 -10613977 + LTR19A-int LTR ERV1 1 149 -5437 2766 74 23 3 chr21 34293599 34293989 -10613581 + LTR19A-int LTR ERV1 281 678 -7041 1625 178 23 6 chr21 34294032 34294375 -10613195 + LTR19A LTR ERV1 138 486 0 2737 123 20 43 chr21 34294375 34294832 -10612738 + MER49 LTR ERV1 437 884 -39 2442 48 41 0 chr21 34294832 34295122 -10612448 - AluY SINE Alu -9 302 1 2737 123 20 43 chr21 34295122 34295151 -10612419 + MER49 LTR ERV1 884 912 -11 2102 185 66 63 chr21 34295185 34295412 -10612158 + MER67B LTR ERV1 87 312 -349 2231 117 0 3 chr21 34295412 34295719 -10611851 + AluSq SINE Alu 1 306 -7 2102 185 66 63 chr21 34295719 34296064 -10611506 + MER67B LTR ERV1 312 661 0 1857 123 72 6 chr21 34296336 34296670 -10610900 - L1PA16 LINE L1 -1 6165 5810 677 108 0 10 chr21 34296709 34296811 -10610759 + U6 snRNA snRNA 1 101 -6 333 317 123 39 chr21 34297197 34297461 -10610109 - L1 LINE L1 -1014 5132 4813 23 0 0 0 chr21 34297461 34297484 -10610086 + AT_rich Low_complexity Low_complexity 1 23 0 333 317 123 39 chr21 34297484 34297531 -10610039 - L1 LINE L1 -1333 4813 4771 2141 209 39 10 chr21 34297802 34298284 -10609286 + L1MD2 LINE L1 5864 6359 0 988 203 35 0 chr21 34298375 34298577 -10608993 + MER3 DNA MER1_type 1 209 0 2546 147 60 29 chr21 34298636 34298679 -10608891 + LOR1a LTR ERV1 1 41 -456 2218 80 6 71 chr21 34298679 34299004 -10608566 - AluSg1 SINE Alu -5 304 1 2546 147 60 29 chr21 34299004 34299442 -10608128 + LOR1a LTR ERV1 41 497 0 429 169 12 69 chr21 34300818 34300996 -10606574 - L1MD2 LINE L1 -18 7977 6068 243 0 0 0 chr21 34301018 34301045 -10606525 + (T)n Simple_repeat Simple_repeat 1 27 0 253 313 31 0 chr21 34303910 34304006 -10603564 + MIR SINE MIR 59 157 -105 1368 95 0 0 chr21 34304039 34304208 -10603362 + AluSg/x SINE Alu 129 297 -13 25 31 0 0 chr21 34304433 34304465 -10603105 + AT_rich Low_complexity Low_complexity 1 32 0 309 109 0 0 chr21 34304494 34304540 -10603030 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1879 109 0 0 chr21 34304552 34304790 -10602780 - AluSq SINE Alu -75 238 1 808 204 151 38 chr21 34305130 34305448 -10602122 - LTR37A LTR ERV1 0 426 73 226 306 58 41 chr21 34305470 34305712 -10601858 + L2 LINE L2 1073 1318 -1996 269 308 103 9 chr21 34305805 34306029 -10601541 + L2 LINE L2 1462 1706 -1608 1489 224 45 82 chr21 34306042 34306635 -10600935 + L1M4 LINE L1 2778 3341 -2805 1969 126 21 0 chr21 34306635 34306921 -10600649 + AluSx SINE Alu 1 292 -20 1489 224 45 82 chr21 34306921 34307055 -10600515 + L1M4 LINE L1 3341 3478 -2668 285 300 108 22 chr21 34308368 34308591 -10598979 + MER89-int LTR ERV1 2825 3066 -3735 860 198 123 94 chr21 34308592 34308993 -10598577 + MLT1C LTR MaLR 2 433 -34 1992 104 68 0 chr21 34308993 34309272 -10598298 - AluSx SINE Alu -14 298 1 860 198 123 94 chr21 34309272 34309309 -10598261 + MLT1C LTR MaLR 433 467 0 220 290 0 0 chr21 34309736 34309805 -10597765 + T-rich Low_complexity Low_complexity 1 69 0 2301 131 88 10 chr21 34309959 34310356 -10597214 + MSTA LTR MaLR 1 428 0 884 305 43 54 chr21 34310439 34310976 -10596594 + MER89-int LTR ERV1 3388 3918 -729 1991 171 0 0 chr21 34311019 34311328 -10596242 + AluJo SINE Alu 3 311 -1 630 337 21 54 chr21 34311453 34311711 -10595859 + MER89-int LTR ERV1 4058 4300 -347 1731 121 3 115 chr21 34311711 34312051 -10595519 + AluSx SINE Alu 1 302 0 630 337 21 54 chr21 34312051 34312181 -10595389 + MER89-int LTR ERV1 4300 4433 -214 204 40 0 0 chr21 34312769 34312794 -10594776 + (T)n Simple_repeat Simple_repeat 1 25 0 2084 139 7 3 chr21 34313185 34313494 -10594076 + AluSx SINE Alu 1 310 -2 2225 122 0 3 chr21 34313898 34314202 -10593368 + AluSx SINE Alu 4 306 -6 1148 133 18 0 chr21 34314204 34314369 -10593201 + AluSg/x SINE Alu 136 303 -9 816 172 0 77 chr21 34315178 34315347 -10592223 + AluJo SINE Alu 12 167 -145 1152 136 0 0 chr21 34315665 34315820 -10591750 - AluSq SINE Alu -158 155 1 3217 201 49 27 chr21 34315824 34316738 -10590832 - L1 LINE L1 -3280 4285 3330 2216 125 0 0 chr21 34316738 34317041 -10590529 + AluSg SINE Alu 1 303 -7 3217 201 49 27 chr21 34317041 34317437 -10590133 - L1 LINE L1 -4235 3330 2944 1049 246 68 8 chr21 34318249 34318497 -10589073 + MLT1H1 LTR MaLR 292 554 -1 236 257 40 0 chr21 34318519 34318593 -10588977 + L1ME4a LINE L1 5316 5392 -772 2004 121 147 46 chr21 34318727 34318770 -10588800 + MSTC LTR MaLR 1 38 -390 1760 155 0 0 chr21 34318770 34319034 -10588536 + AluSx SINE Alu 47 310 -2 2004 121 147 46 chr21 34319034 34319379 -10588191 + MSTC LTR MaLR 38 428 0 1482 191 0 60 chr21 34319400 34319719 -10587851 - AluJo SINE Alu -12 300 1 416 263 84 28 chr21 34319789 34320002 -10587568 + L1ME4a LINE L1 5611 5835 -286 1543 192 10 16 chr21 34320073 34320385 -10587185 - AluJb SINE Alu 0 312 3 286 159 113 106 chr21 34320523 34320625 -10586945 + L1MC5 LINE L1 7537 7643 -318 2063 108 11 0 chr21 34320625 34320926 -10586644 - AluSq SINE Alu 0 308 5 286 159 113 106 chr21 34320926 34320973 -10586597 + L1MC5 LINE L1 7643 7688 -273 2279 98 0 10 chr21 34321128 34321423 -10586147 + AluSx SINE Alu 1 292 -20 3221 135 60 25 chr21 34321423 34321985 -10585585 + LTR59 LTR ERV1 8 589 -8 508 258 44 32 chr21 34322078 34322331 -10585239 + LTR59-int LTR ERV1 133 470 -6128 23 0 0 0 chr21 34322551 34322574 -10584996 + AT_rich Low_complexity Low_complexity 1 23 0 531 0 0 0 chr21 34322587 34322646 -10584924 + (TA)n Simple_repeat Simple_repeat 2 60 0 1080 167 4 70 chr21 34322646 34322874 -10584696 - AluJb SINE Alu -15 297 85 313 154 0 0 chr21 34322874 34322926 -10584644 + MER4D LTR ERV1 309 360 -512 730 153 30 23 chr21 34322953 34323084 -10584486 + LTR29 LTR ERV1 491 622 0 1462 190 30 106 chr21 34323087 34323257 -10584313 + LTR29-int LTR ERV1 3 184 -5762 1877 166 0 25 chr21 34323257 34323577 -10583993 - AluJb SINE Alu 0 312 1 1462 190 30 106 chr21 34323577 34323756 -10583814 + LTR29-int LTR ERV1 184 375 -5571 2708 165 28 42 chr21 34323756 34324260 -10583310 + LOR1a LTR ERV1 1 497 0 1462 190 30 106 chr21 34324260 34324658 -10582912 + LTR29-int LTR ERV1 375 1476 -4470 2257 104 10 0 chr21 34324676 34324985 -10582585 - AluSp SINE Alu -1 312 1 726 144 42 151 chr21 34324986 34325182 -10582388 + MER4B-int LTR ERV1 768 1629 -3251 1909 102 23 0 chr21 34325197 34325461 -10582109 + MER41A LTR ERV1 285 554 0 895 231 16 115 chr21 34325462 34325595 -10581975 + MER4B-int LTR ERV1 1004 1088 -3103 1961 154 0 3 chr21 34325595 34325887 -10581683 + AluSx SINE Alu 11 301 -11 895 231 16 115 chr21 34325887 34326074 -10581496 + MER4B-int LTR ERV1 1088 1292 -2899 2044 134 3 3 chr21 34326079 34326378 -10581192 + AluSp SINE Alu 1 299 -14 1144 136 17 11 chr21 34326378 34326554 -10581016 + AluSg/x SINE Alu 132 308 -1 3088 136 30 6 chr21 34326559 34327012 -10580558 + MER4B-int LTR ERV1 1281 1722 -5036 1708 187 94 85 chr21 34327012 34327509 -10580061 + MER4A LTR ERV1 1 507 -157 2010 152 3 0 chr21 34327509 34327806 -10579764 - AluSx SINE Alu -14 298 1 1708 187 94 85 chr21 34327806 34327966 -10579604 + MER4A LTR ERV1 507 664 0 3088 136 30 6 chr21 34327966 34328202 -10579368 + MER4B-int LTR ERV1 1722 4840 -1918 928 164 6 18 chr21 34328206 34328377 -10579193 - THE1C LTR MaLR 0 375 207 8613 78 10 2 chr21 34328377 34329485 -10578085 + HUERS-P3b LTR ERV1 1526 2642 -4776 2270 182 29 40 chr21 34329486 34329500 -10578070 - LTR8 LTR ERV1 -251 440 427 9187 40 3 1 chr21 34329500 34330569 -10577001 + MER11C LTR ERVK 1 1071 0 2270 182 29 40 chr21 34330569 34330824 -10576746 - LTR8 LTR ERV1 -264 427 175 1953 75 24 4 chr21 34330824 34331077 -10576493 + AluY SINE Alu 37 294 -17 2270 182 29 40 chr21 34331077 34331251 -10576319 - LTR8 LTR ERV1 -516 175 1 2116 89 40 60 chr21 34331251 34331598 -10575972 + HUERS-P3b LTR ERV1 3073 3412 -4006 * 14593 96 15 18 chr21 34331591 34332673 -10574897 + HUERS-P3b LTR ERV1 3973 5056 -2362 2168 116 0 10 chr21 34332673 34332966 -10574604 + AluSq SINE Alu 1 290 -23 14593 96 15 18 chr21 34332966 34334402 -10573168 + HUERS-P3b LTR ERV1 5056 6694 -724 1890 152 203 58 chr21 34334432 34334911 -10572659 + LTR10A LTR ERV1 1 548 -61 967 224 93 128 chr21 34334916 34335612 -10571958 + BaEV-int LTR ERV1 1 672 -5977 9313 169 71 63 chr21 34335711 34339413 -10568157 + BaEV-int LTR ERV1 840 7606 -179 1632 202 48 53 chr21 34339488 34339884 -10567686 + LTR2 LTR ERV1 41 434 -15 777 222 0 25 chr21 34339885 34340047 -10567523 + BaEV-int LTR ERV1 6487 6644 -5 302 167 56 0 chr21 34340051 34340105 -10567465 + LTR10A LTR ERV1 1 57 -552 1949 123 83 34 chr21 34340153 34340502 -10567068 + LTR10A LTR ERV1 183 548 -61 2815 147 0 0 chr21 34340514 34340936 -10566634 + LTR9B-int LTR ERV1 8497 8918 -1 1649 73 0 18 chr21 34340936 34341155 -10566415 + LTR9B LTR ERV1 1 215 -429 3412 170 39 23 chr21 34341226 34341891 -10565679 + MER50 LTR ERV1 1 676 -58 750 141 5 38 chr21 34341898 34342083 -10565487 + GA-rich Low_complexity Low_complexity 1 179 0 2327 103 0 3 chr21 34342205 34342506 -10565064 + AluSq SINE Alu 1 300 -13 252 246 67 52 chr21 34342867 34343001 -10564569 - MIR SINE MIR -4 258 123 347 153 0 0 chr21 34343213 34343272 -10564298 - AluSp/q SINE Alu -6 297 239 * 1014 192 15 0 chr21 34343265 34343463 -10564107 - MER50 LTR ERV1 -533 201 1 2205 108 0 10 chr21 34343516 34343822 -10563748 + AluSg SINE Alu 1 303 -7 213 39 0 0 chr21 34343840 34343866 -10563704 + (CA)n Simple_repeat Simple_repeat 1 26 0 2065 187 48 34 chr21 34343866 34344341 -10563229 + MER50 LTR ERV1 253 734 0 2043 140 27 0 chr21 34344404 34344704 -10562866 - AluSx SINE Alu -4 308 1 1190 215 153 31 chr21 34344906 34345352 -10562218 + MLT1D LTR MaLR 4 503 -2 1582 125 7 91 chr21 34345380 34345676 -10561894 - AluSx SINE Alu 0 312 42 1709 183 17 7 chr21 34345694 34345994 -10561576 - AluJo SINE Alu -5 307 5 243 283 50 25 chr21 34345994 34346114 -10561456 - L1MC/D LINE L1 -1918 5890 5768 22 0 0 0 chr21 34346209 34346231 -10561339 + AT_rich Low_complexity Low_complexity 1 22 0 1438 176 122 11 chr21 34346302 34346580 -10560990 - AluSx SINE Alu -3 309 1 1904 152 0 7 chr21 34346610 34346899 -10560671 - AluJb SINE Alu -24 288 2 1675 182 7 10 chr21 34346964 34347255 -10560315 - AluJo SINE Alu -22 290 1 26 0 0 0 chr21 34347321 34347347 -10560223 + AT_rich Low_complexity Low_complexity 1 26 0 768 209 22 0 chr21 34347366 34347505 -10560065 + MER82 DNA MER2_type 2 143 -510 2048 208 79 2 chr21 34347914 34348061 -10559509 + MER82 DNA MER2_type 199 333 -320 2214 115 0 3 chr21 34348061 34348356 -10559214 + AluSx SINE Alu 4 297 -15 2048 208 79 2 chr21 34348356 34348626 -10558944 + MER82 DNA MER2_type 333 648 -5 198 0 0 0 chr21 34348676 34348698 -10558872 + (T)n Simple_repeat Simple_repeat 1 22 0 2519 65 0 10 chr21 34348730 34349036 -10558534 + AluY SINE Alu 1 303 -8 517 224 107 55 chr21 34349317 34349589 -10557981 - MER33 DNA MER1_type -33 291 6 27 29 0 0 chr21 34349648 34349682 -10557888 + AT_rich Low_complexity Low_complexity 1 34 0 1846 177 0 19 chr21 34349825 34350176 -10557394 - AluJb SINE Alu 0 346 2 1715 144 0 97 chr21 34350195 34350515 -10557055 - AluJo SINE Alu -23 289 1 1443 207 214 7 chr21 34350599 34351048 -10556522 + MLT1F LTR MaLR 1 542 0 2134 128 3 0 chr21 34351074 34351371 -10556199 + AluSx SINE Alu 1 298 -14 1573 156 84 4 chr21 34351465 34351728 -10555842 + AluJb SINE Alu 1 284 -28 27 62 0 0 chr21 34351945 34351993 -10555577 + AT_rich Low_complexity Low_complexity 1 48 0 1438 174 49 34 chr21 34352043 34352079 -10555491 + L1MB8 LINE L1 5840 5874 -304 1958 153 0 10 chr21 34352079 34352387 -10555183 + AluJb SINE Alu 1 305 -7 1438 174 49 34 chr21 34352387 34352678 -10554892 + L1MB8 LINE L1 5874 6172 -6 192 318 0 16 chr21 34353014 34353077 -10554493 + MIR SINE MIR 201 262 0 1473 165 102 4 chr21 34353097 34353408 -10554162 + AluJb SINE Alu 3 338 0 2393 136 30 26 chr21 34353506 34353932 -10553638 - MSTC LTR MaLR 0 428 1 1633 167 26 95 chr21 34354005 34354395 -10553175 + MLT1A1 LTR MaLR 3 365 0 2029 122 0 67 chr21 34354416 34354728 -10552842 + AluSx SINE Alu 1 291 -21 1596 162 59 35 chr21 34354752 34355042 -10552528 + AluJo SINE Alu 3 299 -13 1302 189 134 57 chr21 34355125 34355255 -10552315 + MLT1C LTR MaLR 17 136 -331 2292 112 7 0 chr21 34355255 34355558 -10552012 + AluSx SINE Alu 1 305 -7 1302 189 134 57 chr21 34355558 34355846 -10551724 + MLT1C LTR MaLR 136 467 0 266 331 57 19 chr21 34356124 34356281 -10551289 - L1MC/D LINE L1 -2152 5656 5494 755 236 45 41 chr21 34357227 34357469 -10550101 - MIR SINE MIR 0 262 20 1618 147 118 0 chr21 34357739 34358011 -10549559 - AluSq SINE Alu -9 304 1 1843 111 32 4 chr21 34358020 34358273 -10549297 - AluSc SINE Alu -49 260 1 1579 216 127 9 chr21 34358398 34358838 -10548732 - MLT1D LTR MaLR -9 496 5 1174 152 0 0 chr21 34358867 34359038 -10548532 - AluSc SINE Alu -2 307 137 254 26 53 0 chr21 34359038 34359076 -10548494 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1970 99 0 46 chr21 34359076 34359360 -10548210 - AluY SINE Alu -29 282 12 395 304 199 26 chr21 34359372 34359724 -10547846 + L2 LINE L2 1290 1702 -1612 391 211 24 24 chr21 34359732 34359850 -10547720 + L1M4 LINE L1 2762 2880 -3262 2056 150 16 0 chr21 34359850 34360157 -10547413 + AluSx SINE Alu 1 312 0 189 74 0 0 chr21 34360187 34360214 -10547356 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr21 34360215 34360239 -10547331 + GC_rich Low_complexity Low_complexity 1 24 0 212 68 0 68 chr21 34360467 34360511 -10547059 + (TCC)n Simple_repeat Simple_repeat 3 43 0 252 77 0 0 chr21 34362076 34362115 -10545455 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 684 231 125 32 chr21 34362117 34362549 -10545021 + L1M4 LINE L1 2931 3402 -2744 23 0 0 0 chr21 34363267 34363290 -10544280 + AT_rich Low_complexity Low_complexity 1 23 0 1401 145 24 96 chr21 34363325 34363484 -10544086 + AluJo SINE Alu 1 125 -187 2504 73 3 0 chr21 34363484 34363785 -10543785 + AluSg SINE Alu 1 302 -8 1401 145 24 96 chr21 34363785 34363957 -10543613 + AluJo SINE Alu 125 308 -4 2322 89 10 3 chr21 34364012 34364303 -10543267 - AluSg SINE Alu -15 295 3 959 113 56 12 chr21 34366327 34366487 -10541083 + AluSg/x SINE Alu 130 296 -16 249 250 57 57 chr21 34366633 34366773 -10540797 + LTR16C LTR ERVL 103 242 -249 369 319 80 0 chr21 34366803 34366911 -10540659 + MER5A DNA MER1_type 8 135 -54 2259 110 0 0 chr21 34366911 34367219 -10540351 + AluSx SINE Alu 2 309 -3 369 319 80 0 chr21 34367219 34367273 -10540297 + MER5A DNA MER1_type 135 183 -6 296 169 77 15 chr21 34367292 34367357 -10540213 + MER5A DNA MER1_type 6 74 -115 2188 112 30 0 chr21 34367358 34367661 -10539909 + AluSx SINE Alu 1 312 0 549 44 0 0 chr21 34367661 34367729 -10539841 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 689 188 8 16 chr21 34367729 34367857 -10539713 + MER5A DNA MER1_type 63 189 0 321 47 0 0 chr21 34368268 34368311 -10539259 + (TTTAG)n Simple_repeat Simple_repeat 3 45 0 2116 122 0 7 chr21 34368328 34368614 -10538956 - AluSq SINE Alu -29 284 1 2368 114 3 0 chr21 34368898 34369206 -10538364 - AluSx SINE Alu 0 312 4 439 269 25 8 chr21 34369285 34369404 -10538166 - L2 LINE L2 -13 3259 3139 2338 115 7 0 chr21 34369541 34369846 -10537724 - AluSx SINE Alu -5 307 1 803 169 0 22 chr21 34369890 34370026 -10537544 + FLAM_C SINE Alu 1 133 0 2208 118 3 7 chr21 34370046 34370351 -10537219 - AluSx SINE Alu -6 306 3 2521 74 0 3 chr21 34370890 34371202 -10536368 + AluY SINE Alu 1 311 0 1271 135 43 34 chr21 34371234 34371441 -10536129 + AluJo SINE Alu 89 297 -15 1595 168 3 7 chr21 34371441 34371732 -10535838 - MER47A DNA MER2_type -75 291 2 1212 245 120 30 chr21 34372127 34372315 -10535255 + L1MC4 LINE L1 7435 7605 -437 2555 70 0 0 chr21 34372315 34372613 -10534957 + AluY SINE Alu 1 298 -13 1212 245 120 30 chr21 34372613 34372959 -10534611 + L1MC4 LINE L1 7605 8017 -25 2271 99 10 0 chr21 34373187 34373481 -10534089 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr21 34373697 34373733 -10533837 + AT_rich Low_complexity Low_complexity 1 36 0 2006 175 0 0 chr21 34373762 34374065 -10533505 + AluSx SINE Alu 1 303 -9 2068 123 10 13 chr21 34374337 34374638 -10532932 + AluSx SINE Alu 1 300 -12 1489 169 3 110 chr21 34374644 34374981 -10532589 + AluJb SINE Alu 1 301 -1 2265 120 0 0 chr21 34374986 34375286 -10532284 + AluSx SINE Alu 1 300 -12 1810 164 0 55 chr21 34375475 34375804 -10531766 - AluJb SINE Alu -1 311 1 2310 115 0 3 chr21 34375842 34376146 -10531424 + AluSx SINE Alu 1 303 -9 2322 104 0 3 chr21 34376748 34377055 -10530515 - AluSq SINE Alu -7 306 1 206 146 24 24 chr21 34377055 34377088 -10530482 + CT-rich Low_complexity Low_complexity 2 37 -5 2477 81 3 0 chr21 34377088 34377384 -10530186 - AluSp SINE Alu -16 297 1 608 176 236 7 chr21 34377510 34377658 -10529912 - MER5A DNA MER1_type -7 182 1 2326 114 0 9 chr21 34377804 34378119 -10529451 - AluSx SINE Alu 0 312 1 1740 151 9 72 chr21 34378370 34378688 -10528882 - AluJb SINE Alu -10 302 5 2124 100 3 17 chr21 34378702 34378991 -10528579 - AluSx SINE Alu -15 297 13 1711 168 0 33 chr21 34379222 34379526 -10528044 + AluJo SINE Alu 1 294 -18 1802 153 16 19 chr21 34379962 34380269 -10527301 + AluJo SINE Alu 1 306 -6 1836 171 9 22 chr21 34381000 34381316 -10526254 + AluJb SINE Alu 1 312 0 261 243 27 0 chr21 34381408 34381482 -10526088 + MLT1K LTR MaLR 511 586 -2 667 111 0 10 chr21 34381509 34381608 -10525962 + MER4A LTR ERV1 1 98 -566 1755 113 159 75 chr21 34381608 34381980 -10525590 + MER4A LTR ERV1 261 663 -1 1508 173 100 43 chr21 34382123 34382199 -10525371 - MSTD LTR MaLR 0 396 326 1574 195 20 24 chr21 34382199 34382497 -10525073 + AluJo SINE Alu 7 303 -9 1508 173 100 43 chr21 34382497 34382790 -10524780 - MSTD LTR MaLR -70 326 6 382 268 99 28 chr21 34382794 34382936 -10524634 - MIR SINE MIR -90 172 21 1172 145 0 32 chr21 34383173 34383359 -10524211 - AluSg/x SINE Alu 0 310 131 1248 99 0 0 chr21 34383427 34383588 -10523982 - AluSp SINE Alu -16 297 137 2419 99 0 3 chr21 34383958 34384270 -10523300 + AluSx SINE Alu 1 311 -1 2391 104 0 0 chr21 34384593 34384891 -10522679 - AluSx SINE Alu -14 298 1 205 123 88 18 chr21 34385262 34385319 -10522251 + T-rich Low_complexity Low_complexity 6 66 0 218 268 20 59 chr21 34386760 34386913 -10520657 + C-rich Low_complexity Low_complexity 3 149 0 22 35 0 0 chr21 34387263 34387292 -10520278 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr21 34387452 34387483 -10520087 + GC_rich Low_complexity Low_complexity 1 31 0 889 131 0 36 chr21 34388106 34388263 -10519307 - FLAM_C SINE Alu 0 133 1 303 246 131 16 chr21 34388544 34388666 -10518904 + MIR SINE MIR 43 178 -84 2373 94 3 3 chr21 34388688 34388995 -10518575 + AluSc SINE Alu 1 307 -2 2229 103 0 14 chr21 34389010 34389302 -10518268 + AluSq SINE Alu 1 288 -25 183 42 0 0 chr21 34389306 34389330 -10518240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2393 99 3 0 chr21 34389334 34389638 -10517932 + AluSp SINE Alu 1 305 -8 198 0 0 0 chr21 34390296 34390318 -10517252 + (TAA)n Simple_repeat Simple_repeat 2 23 0 300 334 175 25 chr21 34390590 34390637 -10516933 - L2 LINE L2 -506 2808 2769 2366 108 0 0 chr21 34390637 34390942 -10516628 - AluSx SINE Alu -7 305 1 300 334 175 25 chr21 34390942 34391295 -10516275 - L2 LINE L2 -545 2769 2348 2120 121 23 13 chr21 34391295 34391601 -10515969 - AluSg SINE Alu -1 309 1 1442 218 48 33 chr21 34391616 34391678 -10515892 - L1MB7 LINE L1 -9 6175 6115 643 203 0 51 chr21 34391678 34391816 -10515754 - FLAM_A SINE Alu -1 132 2 1442 218 48 33 chr21 34391816 34392152 -10515418 - L1MB7 LINE L1 -69 6115 5771 864 241 126 23 chr21 34392163 34392366 -10515204 - MLT1A1 LTR MaLR 0 365 128 1887 161 28 0 chr21 34392366 34392651 -10514919 - AluJb SINE Alu -19 293 1 864 241 126 23 chr21 34392651 34392709 -10514861 - MLT1A1 LTR MaLR -237 128 77 1881 143 10 27 chr21 34392709 34393010 -10514560 - AluSx SINE Alu -16 296 1 2369 101 3 3 chr21 34393230 34393536 -10514034 + AluSg SINE Alu 2 307 -3 626 266 118 73 chr21 34393842 34394308 -10513262 - MLT1J LTR MaLR 0 511 25 979 174 0 23 chr21 34394331 34394503 -10513067 + AluJb SINE Alu 131 298 -14 203 162 198 99 chr21 34394657 34394768 -10512802 + L2 LINE L2 3138 3259 -13 201 212 35 24 chr21 34395095 34395180 -10512390 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 281 244 78 35 chr21 34395224 34395339 -10512231 - L1ME4a LINE L1 -56 6065 5946 261 180 0 0 chr21 34395559 34395609 -10511961 + (TG)n Simple_repeat Simple_repeat 1 50 0 1916 95 5 168 chr21 34395668 34395883 -10511687 + MER1B DNA MER1_type 1 249 -2461 2381 87 7 3 chr21 34395883 34396181 -10511389 - AluSx SINE Alu -13 299 1 1916 95 5 168 chr21 34396181 34396316 -10511254 + MER1B DNA MER1_type 249 281 -2429 2372 77 0 13 chr21 34396316 34396614 -10510956 + AluY SINE Alu 1 294 -17 1916 95 5 168 chr21 34396614 34396662 -10510908 + MER1B DNA MER1_type 281 335 -2 2285 107 7 7 chr21 34397331 34397639 -10509931 - AluSx SINE Alu -4 308 1 3608 157 34 57 chr21 34397702 34398096 -10509474 - L1MB5 LINE L1 -8 6166 5765 2429 115 0 0 chr21 34398096 34398408 -10509162 - AluSx SINE Alu 0 312 1 3608 157 34 57 chr21 34398408 34398703 -10508867 - L1MB5 LINE L1 -409 5765 5493 1984 105 27 24 chr21 34398703 34398997 -10508573 - AluSx SINE Alu -17 295 1 3608 157 34 57 chr21 34398997 34399062 -10508508 - L1MB5 LINE L1 -681 5493 5428 31 26 0 0 chr21 34399062 34399100 -10508470 + AT_rich Low_complexity Low_complexity 1 38 0 631 123 0 0 chr21 34400372 34400478 -10507092 - L1MB5 LINE L1 -736 5442 5337 2252 105 0 3 chr21 34400480 34400774 -10506796 + AluSc SINE Alu 1 293 -16 34 0 0 0 chr21 34400774 34400808 -10506762 + AT_rich Low_complexity Low_complexity 1 34 0 1002 156 6 46 chr21 34400808 34400981 -10506589 + FRAM SINE Alu 1 161 -15 277 305 21 11 chr21 34401253 34401348 -10506222 - MIR SINE MIR -152 110 15 227 278 200 0 chr21 34401435 34401525 -10506045 - MIR SINE MIR -85 177 70 1870 215 54 7 chr21 34401526 34401967 -10505603 + MLT1C LTR MaLR 1 462 -5 454 274 127 51 chr21 34401997 34402289 -10505281 - L2 LINE L2 -54 3259 2946 1572 156 62 4 chr21 34402646 34402921 -10504649 + AluJb SINE Alu 3 293 -19 2179 107 0 3 chr21 34403001 34403290 -10504280 + AluSx SINE Alu 1 288 -24 206 214 155 24 chr21 34403400 34403484 -10504086 - MIR3 SINE MIR -6 202 108 2455 72 0 7 chr21 34403583 34403887 -10503683 - AluY SINE Alu -9 302 1 1966 117 0 32 chr21 34404370 34404653 -10502917 + AluSq SINE Alu 1 274 -39 22 0 0 0 chr21 34404653 34404675 -10502895 + AT_rich Low_complexity Low_complexity 1 22 0 1609 131 52 32 chr21 34404712 34404964 -10502606 - AluJb SINE Alu -55 257 1 1951 158 22 59 chr21 34405053 34405265 -10502305 - MLT1B LTR MaLR 0 390 172 2481 93 3 0 chr21 34405265 34405575 -10501995 - AluSq SINE Alu -2 311 1 1951 158 22 59 chr21 34405575 34405674 -10501896 - MLT1B LTR MaLR -218 172 95 2090 157 3 6 chr21 34405674 34405986 -10501584 + AluSx SINE Alu 1 311 -1 1951 158 22 59 chr21 34405986 34406078 -10501492 - MLT1B LTR MaLR -295 95 1 294 29 0 0 chr21 34406252 34406287 -10501283 + (TG)n Simple_repeat Simple_repeat 1 35 0 2173 103 31 10 chr21 34406986 34407277 -10500293 - AluSx SINE Alu -15 297 1 2375 157 53 19 chr21 34407662 34408076 -10499494 + MSTC LTR MaLR 1 428 0 597 164 88 70 chr21 34408200 34408371 -10499199 + MLT1B LTR MaLR 1 174 -216 1352 150 0 36 chr21 34408373 34408593 -10498977 + AluJb SINE Alu 1 212 -100 954 150 83 1 chr21 34408623 34408822 -10498748 + MLT1B LTR MaLR 157 390 0 293 218 68 53 chr21 34408963 34408982 -10498588 - L1MA9 LINE L1 0 6312 6294 1489 206 32 35 chr21 34408982 34409613 -10497957 - L1ME1 LINE L1 -24 6142 5397 229 288 119 34 chr21 34409668 34409845 -10497725 + L1ME LINE L1 5675 5866 -255 349 262 159 0 chr21 34409954 34410080 -10497490 - L1ME LINE L1 -357 5764 5619 411 282 50 96 chr21 34410246 34410452 -10497118 - L1ME LINE L1 -1470 4676 4462 2045 114 7 39 chr21 34410452 34410759 -10496811 + AluSx SINE Alu 2 298 -14 2256 106 0 17 chr21 34410763 34411064 -10496506 + AluSx SINE Alu 1 296 -16 411 282 50 96 chr21 34411064 34411175 -10496395 - L1ME LINE L1 -1687 4459 4369 429 302 53 57 chr21 34411276 34411444 -10496126 - MLT1J1 LTR MaLR 0 446 278 2463 84 0 0 chr21 34411444 34411743 -10495827 - AluSx SINE Alu -13 299 1 429 302 53 57 chr21 34411743 34411875 -10495695 - MLT1J1 LTR MaLR -168 278 147 723 261 76 28 chr21 34412383 34412674 -10494896 + MLT1L LTR MaLR 1 305 -310 1712 186 18 0 chr21 34412716 34413001 -10494569 + AluJo SINE Alu 1 290 -22 870 203 89 0 chr21 34413188 34413346 -10494224 - FAM SINE Alu -3 172 1 692 129 13 84 chr21 34413350 34413505 -10494065 - MER20 DNA MER1_type -75 144 1 2194 107 3 32 chr21 34414027 34414201 -10493369 - AluSx SINE Alu -11 301 138 2367 119 0 0 chr21 34414201 34414513 -10493057 - AluSx SINE Alu 0 312 1 2194 107 3 32 chr21 34414513 34414648 -10492922 - AluSx SINE Alu -174 138 1 2425 94 0 0 chr21 34416085 34416383 -10491187 + AluSx SINE Alu 1 298 -14 334 236 6 24 chr21 34416477 34416642 -10490928 + (TG)n Simple_repeat Simple_repeat 1 162 0 211 325 54 16 chr21 34416983 34417113 -10490457 - MIR SINE MIR -71 137 2 324 70 0 0 chr21 34417353 34417396 -10490174 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 2030 119 4 7 chr21 34417483 34417761 -10489809 - AluSq SINE Alu -36 277 1 2036 139 23 3 chr21 34417763 34418065 -10489505 - AluJo SINE Alu -4 308 1 395 70 0 0 chr21 34419131 34419188 -10488382 - L1MB2 LINE L1 -7 6164 6108 1946 98 87 0 chr21 34419617 34419883 -10487687 + AluSg SINE Alu 1 289 -21 2314 114 0 3 chr21 34419893 34420192 -10487378 + AluSg SINE Alu 1 298 -12 2178 109 0 26 chr21 34420200 34420502 -10487068 + AluSx SINE Alu 1 294 -18 2160 131 3 0 chr21 34420560 34420857 -10486713 - AluSx SINE Alu -10 302 5 183 100 0 0 chr21 34421420 34421450 -10486120 + (A)n Simple_repeat Simple_repeat 1 30 0 2415 91 3 0 chr21 34421668 34421964 -10485606 + AluSx SINE Alu 1 297 -15 849 116 58 0 chr21 34422038 34422176 -10485394 - L1MB3 LINE L1 -8 6175 6030 232 233 0 0 chr21 34422179 34422222 -10485348 - Alu SINE Alu -187 115 73 1934 171 7 0 chr21 34422241 34422533 -10485037 + AluJb SINE Alu 1 294 -18 1856 159 30 13 chr21 34422547 34422848 -10484722 - AluJb SINE Alu -6 306 1 2486 70 3 7 chr21 34422850 34423152 -10484418 - AluY SINE Alu -10 301 1 1205 219 64 23 chr21 34423286 34423621 -10483949 - MER39 LTR ERV1 0 690 357 341 228 187 11 chr21 34424078 34424221 -10483349 - MIR SINE MIR -20 242 76 336 274 42 21 chr21 34424508 34424603 -10482967 - L1MC/D LINE L1 -2341 5467 5371 2361 107 0 0 chr21 34424652 34424951 -10482619 - AluSx SINE Alu -13 299 1 1732 159 0 81 chr21 34425088 34425224 -10482346 + AluJb SINE Alu 1 146 -166 2177 135 3 3 chr21 34425224 34425527 -10482043 + AluSx SINE Alu 2 304 -8 1732 159 0 81 chr21 34425527 34425710 -10481860 + AluJb SINE Alu 146 294 -18 376 161 37 0 chr21 34425921 34426002 -10481568 - MLT1I LTR MaLR -2 407 324 250 335 51 19 chr21 34426084 34426242 -10481328 - MLT1I LTR MaLR -198 211 49 1395 192 17 52 chr21 34426791 34427078 -10480492 + AluJo SINE Alu 1 277 -35 2123 103 34 17 chr21 34427105 34427396 -10480174 - AluSg SINE Alu -14 296 1 306 247 62 0 chr21 34427650 34427731 -10479839 - L2 LINE L2 -21 3251 3166 2318 93 0 32 chr21 34427892 34428203 -10479367 + AluSx SINE Alu 1 301 -11 184 167 0 28 chr21 34428220 34428256 -10479314 + L2 LINE L2 3278 3312 -1 2376 108 0 0 chr21 34428312 34428617 -10478953 + AluY SINE Alu 1 305 -6 5483 52 8 0 chr21 34429603 34430274 -10477296 - L1PA5 LINE L1 -1 6153 5478 2427 68 14 0 chr21 34430726 34431018 -10476552 + AluY SINE Alu 1 296 -15 257 245 102 95 chr21 34431406 34431507 -10476063 - MIR SINE MIR -113 149 45 2355 112 0 0 chr21 34431507 34431812 -10475758 - AluSx SINE Alu -7 305 1 257 245 102 95 chr21 34431812 34431857 -10475713 - MIR SINE MIR -217 45 2 180 0 0 0 chr21 34431995 34432015 -10475555 + (TG)n Simple_repeat Simple_repeat 1 20 0 2311 113 0 6 chr21 34432067 34432378 -10475192 + AluSx SINE Alu 1 309 -3 242 310 23 0 chr21 34432912 34432999 -10474571 + L2 LINE L2 3184 3272 0 1205 136 0 0 chr21 34433584 34433746 -10473824 + AluSg/x SINE Alu 133 294 -16 1111 192 23 23 chr21 34434219 34434438 -10473132 + MER20 DNA MER1_type 1 219 0 750 229 7 0 chr21 34434671 34434815 -10472755 - AluJo/FRAM SINE Alu -34 278 134 2455 83 7 0 chr21 34434817 34435118 -10472452 - AluSx SINE Alu -8 304 2 2236 126 3 0 chr21 34435543 34435852 -10471718 - AluSx SINE Alu -2 310 1 2264 88 3 17 chr21 34435892 34436187 -10471383 + AluSq SINE Alu 5 295 -18 1823 173 10 0 chr21 34436415 34436710 -10470860 + AluJb SINE Alu 1 298 -14 2383 106 0 0 chr21 34437337 34437649 -10469921 - AluSx SINE Alu 0 312 1 228 35 0 0 chr21 34437655 34437684 -10469886 + (T)n Simple_repeat Simple_repeat 1 29 0 302 337 55 25 chr21 34437693 34437856 -10469714 - MIR SINE MIR -70 192 25 2019 91 4 11 chr21 34439279 34439554 -10468016 - AluSx SINE Alu -5 307 35 255 350 68 0 chr21 34440063 34440180 -10467390 + MIR SINE MIR 109 233 -29 1916 154 0 22 chr21 34440390 34440529 -10467041 + AluSx SINE Alu 1 142 -170 2265 117 0 0 chr21 34440529 34440827 -10466743 + AluSx SINE Alu 3 300 -12 1916 154 0 22 chr21 34440827 34440998 -10466572 + AluSx SINE Alu 142 304 -8 214 242 148 47 chr21 34441441 34441590 -10465980 - MIR3 SINE MIR -6 202 39 1953 151 21 0 chr21 34442949 34443240 -10464330 - AluSx SINE Alu -15 297 1 1016 88 0 0 chr21 34443673 34443798 -10463772 + AluSq/x SINE Alu 1 125 -188 1716 69 0 5 chr21 34443801 34444004 -10463566 - AluSx SINE Alu -110 202 1 1768 140 3 62 chr21 34444907 34445215 -10462355 + AluJb SINE Alu 1 290 -22 318 232 56 88 chr21 34445386 34445511 -10462059 + MIR3 SINE MIR 85 205 -3 258 32 0 0 chr21 34445555 34445586 -10461984 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2138 113 0 14 chr21 34445587 34445869 -10461701 - AluSx SINE Alu -34 278 1 2367 85 3 0 chr21 34445897 34446190 -10461380 + AluSg SINE Alu 1 294 -16 2277 122 0 0 chr21 34446195 34446489 -10461081 + AluSx SINE Alu 1 294 -18 2226 127 7 0 chr21 34446661 34446960 -10460610 + AluSx SINE Alu 1 301 -11 211 250 94 0 chr21 34447019 34447083 -10460487 - L2 LINE L2 -2 3270 3201 468 266 16 75 chr21 34447157 34447345 -10460225 - MIR SINE MIR 0 262 86 2191 113 31 0 chr21 34448115 34448407 -10459163 + AluSx SINE Alu 1 301 -11 758 204 47 21 chr21 34448860 34449051 -10458519 + MIR SINE MIR 64 259 -3 286 248 106 19 chr21 34450137 34450298 -10457272 - L1ME4a LINE L1 0 6121 5947 1793 162 32 26 chr21 34450360 34450668 -10456902 - AluJb SINE Alu 0 312 3 1805 171 0 0 chr21 34450696 34450976 -10456594 - AluJo SINE Alu -32 280 1 338 294 71 82 chr21 34451054 34451076 -10456494 - L1ME4a LINE L1 -330 5791 5770 2172 130 0 7 chr21 34451076 34451383 -10456187 + AluSx SINE Alu 1 305 -7 338 294 71 82 chr21 34451383 34451430 -10456140 - L1ME4a LINE L1 -351 5770 5724 2115 135 3 6 chr21 34451430 34451741 -10455829 - AluSg SINE Alu 0 310 1 2035 146 3 0 chr21 34451743 34452037 -10455533 - AluSx SINE Alu -17 295 1 338 294 71 82 chr21 34452037 34452162 -10455408 - L1ME4a LINE L1 -398 5723 5594 2223 110 7 23 chr21 34452162 34452470 -10455100 + AluSx SINE Alu 1 303 -9 338 294 71 82 chr21 34452470 34452539 -10455031 - L1ME4a LINE L1 -527 5594 5526 1897 129 80 0 chr21 34452590 34452876 -10454694 - AluSg SINE Alu -1 309 1 1808 126 3 92 chr21 34454019 34454345 -10453225 - AluSq SINE Alu -16 297 1 2111 141 0 3 chr21 34455097 34455396 -10452174 - AluSx SINE Alu -14 298 1 680 224 0 8 chr21 34455997 34456131 -10451439 + FLAM_A SINE Alu 1 133 0 2323 104 0 3 chr21 34456162 34456460 -10451110 - AluSq SINE Alu -12 301 5 1844 175 7 14 chr21 34456466 34456763 -10450807 - AluJb SINE Alu -17 295 1 2422 82 0 10 chr21 34456794 34457123 -10450447 + AluY SINE Alu 6 311 0 2347 72 0 0 chr21 34457131 34457410 -10450160 + AluY SINE Alu 1 279 -32 222 37 0 0 chr21 34457412 34457439 -10450131 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1741 168 14 3 chr21 34457917 34458046 -10449524 + AluJo SINE Alu 6 132 -180 2150 139 10 0 chr21 34458046 34458349 -10449221 + AluSx SINE Alu 1 306 -6 2287 85 0 0 chr21 34458350 34458693 -10448877 + AluY SINE Alu 1 343 0 1741 168 14 3 chr21 34458693 34458846 -10448724 + AluJo SINE Alu 131 294 -18 2226 179 39 22 chr21 34459042 34459500 -10448070 - MLT1C LTR MaLR 0 467 2 2368 96 0 3 chr21 34459527 34459828 -10447742 - AluSx SINE Alu -12 300 1 510 156 119 9 chr21 34459891 34460000 -10447570 - FLAM_C SINE Alu -21 122 2 1197 170 49 9 chr21 34461060 34461284 -10446286 - MER46A DNA MER2_type -2 234 2 2285 109 0 22 chr21 34461537 34461710 -10445860 - AluSx SINE Alu -6 306 142 2459 87 0 0 chr21 34461710 34462009 -10445561 - AluSc SINE Alu -10 299 1 2285 109 0 22 chr21 34462009 34462148 -10445422 - AluSx SINE Alu -170 142 1 1354 189 107 27 chr21 34462157 34462522 -10445048 - MLT1C LTR MaLR 0 467 74 2708 200 60 39 chr21 34462954 34463643 -10443927 - L1M4b LINE L1 -6134 725 23 2208 115 0 13 chr21 34463718 34464023 -10443547 - AluSx SINE Alu -11 301 1 2025 128 48 0 chr21 34464413 34464702 -10442868 - AluSx SINE Alu -9 303 1 1385 143 13 0 chr21 34464713 34464950 -10442620 - L1MA6 LINE L1 -5 6295 6056 1731 148 10 37 chr21 34465303 34465600 -10441970 + AluJb SINE Alu 1 289 -23 2300 106 0 28 chr21 34466631 34466951 -10440619 - AluSx SINE Alu -1 311 1 819 138 31 0 chr21 34467615 34467745 -10439825 + AluJo SINE Alu 1 134 -178 2362 109 3 0 chr21 34467751 34468062 -10439508 + AluSx SINE Alu 1 312 0 2296 102 0 0 chr21 34468686 34468981 -10438589 + AluSq SINE Alu 1 295 -18 208 213 98 16 chr21 34469306 34469367 -10438203 + MER5A DNA MER1_type 101 166 -23 * 505 197 26 26 chr21 34469357 34469474 -10438096 - MER5B DNA MER1_type -53 125 9 2256 91 0 0 chr21 34470063 34470338 -10437232 + AluSx SINE Alu 1 275 -37 192 40 0 0 chr21 34470345 34470370 -10437200 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1195 81 39 179 chr21 34470721 34470887 -10436683 + LTR61 LTR ERV1 1 106 -489 2321 100 0 0 chr21 34470887 34471187 -10436383 + AluY SINE Alu 10 309 -2 1195 81 39 179 chr21 34471187 34471327 -10436243 + LTR61 LTR ERV1 106 264 -331 2214 86 3 95 chr21 34471369 34471706 -10435864 - AluSp SINE Alu -7 306 1 351 0 0 0 chr21 34472017 34472056 -10435514 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1961 133 0 7 chr21 34472062 34472340 -10435230 - AluSx SINE Alu -36 276 1 950 146 0 7 chr21 34472341 34472478 -10435092 - AluSq/x SINE Alu -177 136 1 2353 119 0 0 chr21 34472835 34473145 -10434425 - AluSx SINE Alu -2 310 1 231 114 0 0 chr21 34473215 34473250 -10434320 + (T)n Simple_repeat Simple_repeat 1 35 0 1742 154 0 98 chr21 34473533 34473870 -10433700 - AluJo SINE Alu -8 304 1 2124 136 17 0 chr21 34473880 34474182 -10433388 - AluSx SINE Alu 0 312 6 2312 102 3 3 chr21 34474287 34474590 -10432980 - AluSq SINE Alu -10 303 1 486 0 0 0 chr21 34476709 34476763 -10430807 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 1885 117 29 11 chr21 34476763 34477044 -10430526 - AluSx SINE Alu -26 286 1 2342 112 0 6 chr21 34478688 34479002 -10428568 + AluSx SINE Alu 1 312 0 2069 131 0 3 chr21 34479010 34479301 -10428269 + AluJb SINE Alu 1 290 -22 259 292 10 21 chr21 34479863 34479959 -10427611 + MIR SINE MIR 102 196 -66 205 302 135 0 chr21 34480146 34480242 -10427328 - L2 LINE L2 0 3313 3205 2239 124 0 3 chr21 34481272 34481586 -10425984 - AluSq SINE Alu 0 313 1 1737 144 91 0 chr21 34481789 34482053 -10425517 + AluJb SINE Alu 6 293 -19 1001 216 0 0 chr21 34482174 34482345 -10425225 + FRAM SINE Alu 1 168 -8 1818 86 9 0 chr21 34482440 34482662 -10424908 - AluSg SINE Alu -73 237 14 498 96 0 16 chr21 34483294 34483528 -10424042 + AluSq SINE Alu 1 307 -5 2237 200 65 39 chr21 34484129 34484789 -10422781 - MER67B LTR ERV1 0 661 1 1205 142 0 0 chr21 34484813 34484982 -10422588 - AluSg/x SINE Alu -10 302 134 195 69 0 0 chr21 34484984 34485013 -10422557 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1779 118 54 39 chr21 34485013 34485292 -10422278 - AluSg SINE Alu -27 283 1 1815 140 55 20 chr21 34485305 34485597 -10421973 - AluJb SINE Alu -10 302 1 1789 127 105 0 chr21 34486051 34486318 -10421252 + AluJo SINE Alu 1 295 -17 993 196 8 85 chr21 34486359 34486619 -10420951 + L1MB3 LINE L1 5671 5910 -273 3659 158 55 59 chr21 34486644 34487404 -10420166 - MER21A LTR ERV1 -34 897 141 858 110 4 66 chr21 34487441 34487724 -10419846 + (TAGG)n Simple_repeat Simple_repeat 1 265 0 782 55 0 101 chr21 34487749 34487948 -10419622 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 204 91 61 0 chr21 34487948 34487981 -10419589 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1696 167 36 0 chr21 34488003 34488278 -10419292 + AluJb SINE Alu 11 295 -17 530 183 0 19 chr21 34488293 34488397 -10419173 - U13 snRNA snRNA -2 102 1 2474 48 35 0 chr21 34488838 34489128 -10418442 - AluY SINE Alu -9 302 3 2203 123 0 7 chr21 34489130 34489438 -10418132 - AluSx SINE Alu -6 306 1 912 139 15 0 chr21 34489908 34490045 -10417525 + AluSg/x SINE Alu 168 306 -4 417 215 0 0 chr21 34490071 34490164 -10417406 + GA-rich Low_complexity Low_complexity 1 93 0 2387 107 0 0 chr21 34490948 34491257 -10416313 + AluSx SINE Alu 1 309 -3 2057 130 0 13 chr21 34491490 34491791 -10415779 + AluSx SINE Alu 1 297 -15 260 248 27 50 chr21 34492200 34492293 -10415277 - MIR SINE MIR -113 95 4 2038 131 10 19 chr21 34492471 34492818 -10414752 + AluSx SINE Alu 1 344 0 2431 80 3 0 chr21 34492818 34493120 -10414450 + AluSq SINE Alu 1 303 -10 1798 163 36 0 chr21 34494006 34494283 -10413287 + AluJb SINE Alu 3 289 -23 2065 125 9 38 chr21 34494319 34494638 -10412932 - AluSx SINE Alu -2 310 1 404 187 95 15 chr21 34494718 34494841 -10412729 + L1MC4 LINE L1 6996 7203 -685 2427 97 0 0 chr21 34494979 34495288 -10412282 + AluSq SINE Alu 1 309 -4 3134 178 48 23 chr21 34495657 34496031 -10411539 - MER21B LTR ERV1 0 863 465 2404 91 10 0 chr21 34496031 34496339 -10411231 - AluSq SINE Alu -2 311 1 3134 178 48 23 chr21 34496339 34496606 -10410964 - MER21B LTR ERV1 -398 465 206 364 244 22 0 chr21 34496643 34496733 -10410837 - MER21B LTR ERV1 -771 92 1 402 191 0 0 chr21 34497281 34497349 -10410221 + MER3 DNA MER1_type 45 112 -97 919 131 51 0 chr21 34497352 34497489 -10410081 + AluJo SINE Alu 86 229 -83 4590 59 13 17 chr21 34497529 34498566 -10409004 - MER11A LTR ERVK 0 1266 3 2089 105 0 0 chr21 34498566 34498833 -10408737 - AluSc SINE Alu -42 267 1 428 136 0 0 chr21 34498833 34498892 -10408678 + AluJo SINE Alu 222 280 -32 1004 121 40 125 chr21 34498916 34499017 -10408553 + MER33 DNA MER1_type 53 161 -2424 2239 123 3 0 chr21 34499017 34499319 -10408251 - AluSq SINE Alu -9 304 2 1004 121 40 125 chr21 34499319 34499394 -10408176 + MER33 DNA MER1_type 161 241 -2344 2120 117 3 30 chr21 34499394 34499694 -10407876 - AluSx SINE Alu -20 292 1 1004 121 40 125 chr21 34499694 34499813 -10407757 + MER33 DNA MER1_type 241 324 0 226 113 75 19 chr21 34500083 34500136 -10407434 + L1MA8 LINE L1 6124 6179 -112 2322 107 0 7 chr21 34500136 34500444 -10407126 + AluSg SINE Alu 1 306 -4 2345 101 3 0 chr21 34500497 34500804 -10406766 + AluSx SINE Alu 1 308 -4 374 165 13 0 chr21 34500891 34500970 -10406600 + L1MA9 LINE L1 6231 6310 -2 365 103 0 0 chr21 34501073 34501131 -10406439 - AluSq SINE Alu 0 302 245 1959 105 8 0 chr21 34501179 34501437 -10406133 - AluSq SINE Alu -53 260 1 456 127 0 0 chr21 34501716 34501787 -10405783 + AluS SINE Alu 1 71 -241 355 284 56 6 chr21 34501807 34501987 -10405583 - MER110 LTR ERV1 -340 151 1 853 221 58 90 chr21 34502071 34502233 -10405337 + AluSx SINE Alu 1 167 -135 2213 110 10 10 chr21 34502233 34502533 -10405037 + AluSx SINE Alu 1 300 -12 853 221 58 90 chr21 34502533 34502568 -10405002 + AluSx SINE Alu 167 202 -100 2546 66 3 0 chr21 34502568 34502873 -10404697 + AluSp SINE Alu 1 306 -7 853 221 58 90 chr21 34502873 34502986 -10404584 + AluSx SINE Alu 202 302 0 2252 108 0 7 chr21 34502990 34503287 -10404283 + AluSq SINE Alu 1 295 -18 802 297 152 40 chr21 34503303 34503659 -10403911 - L2 LINE L2 -144 3169 2854 2369 64 14 10 chr21 34503659 34503954 -10403616 + AluY SINE Alu 1 296 -15 802 297 152 40 chr21 34503954 34504354 -10403216 - L2 LINE L2 -459 2854 2328 615 316 147 20 chr21 34504356 34504698 -10402872 - L2 LINE L2 -1210 2104 1807 2357 112 0 0 chr21 34504698 34505010 -10402560 - AluSx SINE Alu 0 312 1 615 316 147 20 chr21 34505010 34505205 -10402365 - L2 LINE L2 -1507 1807 1499 1801 154 38 10 chr21 34505210 34505503 -10402067 + AluJb SINE Alu 1 301 -11 616 311 231 12 chr21 34505503 34506066 -10401504 - L2 LINE L2 -2001 1313 628 1916 183 0 0 chr21 34506114 34506414 -10401156 + AluJb SINE Alu 1 300 -12 2378 114 0 0 chr21 34506424 34506731 -10400839 + AluSx SINE Alu 1 307 -5 2280 83 3 3 chr21 34507157 34507446 -10400124 - AluSc SINE Alu -20 289 1 2164 105 43 20 chr21 34507502 34507807 -10399763 - AluSx SINE Alu 0 312 1 2166 122 0 3 chr21 34508451 34508746 -10398824 + AluSq SINE Alu 1 294 -19 1878 149 3 44 chr21 34508995 34509316 -10398254 + AluJb SINE Alu 1 308 -4 2466 82 3 0 chr21 34509737 34510040 -10397530 - AluSp SINE Alu -9 304 1 2464 70 3 0 chr21 34510587 34510885 -10396685 + AluY SINE Alu 1 299 -12 2011 138 37 0 chr21 34510890 34511186 -10396384 + AluJb SINE Alu 1 307 -5 1156 162 100 19 chr21 34511487 34511817 -10395753 - MSTD LTR MaLR 0 396 1 2127 130 10 0 chr21 34512004 34512304 -10395266 + AluSq SINE Alu 1 303 -10 1943 141 31 0 chr21 34512559 34512849 -10394721 + AluSx SINE Alu 1 299 -13 2217 113 3 7 chr21 34512939 34513248 -10394322 - AluSx SINE Alu -4 308 1 2336 121 0 6 chr21 34513802 34514115 -10393455 - AluSx SINE Alu -1 311 1 2586 81 0 0 chr21 34514124 34514434 -10393136 - AluSg SINE Alu 0 310 1 274 185 12 80 chr21 34514683 34514845 -10392725 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 2324 99 0 20 chr21 34514921 34515225 -10392345 - AluSx SINE Alu -14 298 1 2152 99 20 17 chr21 34515596 34515889 -10391681 + AluSx SINE Alu 1 294 -18 676 216 24 0 chr21 34516045 34516212 -10391358 + L1MA9 LINE L1 5994 6164 -148 2165 113 0 3 chr21 34516221 34516505 -10391065 + AluSx SINE Alu 4 286 -26 315 0 0 0 chr21 34516505 34516540 -10391030 + (CA)n Simple_repeat Simple_repeat 2 36 0 2118 131 0 7 chr21 34516545 34516843 -10390727 + AluSx SINE Alu 1 296 -16 2477 94 0 0 chr21 34517442 34517750 -10389820 - AluSg SINE Alu -2 308 1 1163 187 178 12 chr21 34518276 34518517 -10389053 + AluSg SINE Alu 1 281 -19 23 33 0 0 chr21 34518540 34518570 -10389000 + AT_rich Low_complexity Low_complexity 1 30 0 459 0 0 0 chr21 34519290 34519341 -10388229 + (TG)n Simple_repeat Simple_repeat 1 51 0 2802 152 19 6 chr21 34519621 34520088 -10387482 + L1MC1 LINE L1 5857 6329 -4 1013 125 0 0 chr21 34520108 34520244 -10387326 + AluSq/x SINE Alu 1 136 -177 2182 104 0 20 chr21 34520244 34520382 -10387188 + AluSx SINE Alu 1 140 -172 2214 92 30 23 chr21 34520382 34520686 -10386884 + AluSp SINE Alu 1 306 -7 2182 104 0 20 chr21 34520686 34520845 -10386725 + AluSx SINE Alu 140 292 -20 2181 110 3 0 chr21 34520847 34521139 -10386431 + AluSg SINE Alu 1 293 -17 2285 89 7 7 chr21 34521144 34521437 -10386133 + AluSg1 SINE Alu 1 293 -16 1816 221 59 7 chr21 34521448 34521909 -10385661 + L1MB8 LINE L1 5686 6170 -8 1374 174 9 104 chr21 34522108 34522453 -10385117 - AluJo SINE Alu 0 312 1 2258 126 0 16 chr21 34522462 34522779 -10384791 - AluSx SINE Alu 0 312 1 2115 107 4 0 chr21 34522814 34523086 -10384484 + AluSx SINE Alu 25 297 -15 2258 99 14 0 chr21 34523566 34523859 -10383711 + AluSx SINE Alu 1 297 -15 2516 64 3 0 chr21 34524311 34524607 -10382963 + AluSp SINE Alu 2 298 -15 194 0 39 0 chr21 34524664 34524690 -10382880 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr21 34524918 34524947 -10382623 + AT_rich Low_complexity Low_complexity 1 29 0 997 148 0 6 chr21 34525660 34525822 -10381748 - AluSg/x SINE Alu -18 294 134 1336 40 0 0 chr21 34525822 34525974 -10381596 - AluSg/x SINE Alu -3 307 156 446 235 188 13 chr21 34526081 34526230 -10381340 + MIR SINE MIR 1 175 -87 271 257 125 33 chr21 34526256 34526408 -10381162 - Charlie7 DNA MER1_type -2 2610 2445 2252 113 0 0 chr21 34526414 34526714 -10380856 + AluSc SINE Alu 1 300 -9 1921 156 10 10 chr21 34526725 34527026 -10380544 + AluJb SINE Alu 1 301 -11 1685 152 20 37 chr21 34527048 34527244 -10380326 - AluJo SINE Alu -13 299 108 1723 126 112 35 chr21 34527244 34527592 -10379978 - THE1C LTR MaLR 0 375 1 1685 152 20 37 chr21 34527592 34527691 -10379879 - AluJo SINE Alu -204 108 9 2161 102 32 0 chr21 34528537 34528822 -10378748 + AluSg SINE Alu 1 294 -16 191 294 88 29 chr21 34529474 34529542 -10378028 + L2 LINE L2 3200 3271 -1 2195 129 3 0 chr21 34529767 34530070 -10377500 - AluSx SINE Alu -8 304 1 1775 132 61 44 chr21 34530075 34530234 -10377336 - AluJo SINE Alu -12 300 145 221 0 0 33 chr21 34530234 34530264 -10377306 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2088 121 7 0 chr21 34530264 34530545 -10377025 - AluSx SINE Alu -29 283 1 1775 132 61 44 chr21 34530545 34530679 -10376891 - AluJo SINE Alu -166 146 1 1866 140 44 4 chr21 34530981 34531281 -10376289 + AluSx SINE Alu 3 313 0 4594 29 45 28 chr21 34531364 34531644 -10375926 - LTR10C LTR ERV1 0 591 317 2228 77 0 7 chr21 34531644 34531918 -10375652 + AluY SINE Alu 1 272 -39 4594 29 45 28 chr21 34531918 34532218 -10375352 - LTR10C LTR ERV1 -274 317 1 1568 199 4 0 chr21 34532251 34532532 -10375038 + AluJo SINE Alu 18 299 -13 1241 252 109 23 chr21 34532612 34533016 -10374554 + L1MC4a LINE L1 5254 5716 -2092 2053 129 3 28 chr21 34533016 34533333 -10374237 + AluSx SINE Alu 1 309 -3 1241 252 109 23 chr21 34533333 34533460 -10374110 + L1MC4a LINE L1 5716 5831 -1977 2224 92 18 0 chr21 34533460 34533743 -10373827 - AluSx SINE Alu -10 302 15 750 82 10 0 chr21 34533860 34533958 -10373612 - AluSq/x SINE Alu -181 131 33 1870 144 0 14 chr21 34534004 34534360 -10373210 - AluJb SINE Alu 0 312 3 950 210 33 85 chr21 34534581 34534638 -10372932 - MLT1D LTR MaLR -9 496 438 2342 96 0 3 chr21 34534638 34534931 -10372639 + AluSg SINE Alu 3 294 -16 950 210 33 85 chr21 34534931 34535178 -10372392 - MLT1D LTR MaLR -67 438 208 2009 146 0 3 chr21 34535180 34535474 -10372096 + AluSx SINE Alu 13 305 -7 1097 141 37 0 chr21 34535474 34535637 -10371933 + AluSg/x SINE Alu 134 302 -10 647 163 35 35 chr21 34535638 34535779 -10371791 + LTR8 LTR ERV1 385 525 -166 617 119 0 0 chr21 34535791 34535875 -10371695 + AluSg/x SINE Alu 209 292 -18 800 153 54 44 chr21 34535877 34535898 -10371672 + LTR8 LTR ERV1 546 565 -126 4324 113 47 80 chr21 34535898 34536087 -10371483 - MER4E LTR ERV1 0 779 585 1553 109 194 0 chr21 34536087 34536334 -10371236 + AluSq SINE Alu 1 295 -18 4324 113 47 80 chr21 34536334 34536512 -10371058 - MER4E LTR ERV1 -194 585 403 2268 116 0 25 chr21 34536512 34536830 -10370740 + AluSx SINE Alu 1 310 -2 4324 113 47 80 chr21 34536830 34537248 -10370322 - MER4E LTR ERV1 -376 403 17 2096 105 49 3 chr21 34537248 34537534 -10370036 + AluSx SINE Alu 1 299 -13 4324 113 47 80 chr21 34537534 34537551 -10370019 - MER4E LTR ERV1 -762 17 1 800 153 54 44 chr21 34537551 34537701 -10369869 + LTR8 LTR ERV1 565 691 0 446 163 35 0 chr21 34537701 34537786 -10369784 - MLT1D LTR MaLR -415 90 3 1961 151 0 0 chr21 34537803 34538127 -10369443 + AluSx SINE Alu 5 328 0 1345 157 244 3 chr21 34538127 34538516 -10369054 + LTR54B LTR ERV1 12 494 -4 383 199 56 178 chr21 34538540 34538739 -10368831 - L1MC5 LINE L1 -1086 6875 6719 2221 98 0 3 chr21 34538739 34539060 -10368510 - AluSx SINE Alu 0 320 1 383 199 56 178 chr21 34539060 34539145 -10368425 - L1MC5 LINE L1 -1242 6719 6625 1532 176 0 43 chr21 34539151 34539181 -10368389 - AluJo SINE Alu -15 297 267 2537 47 0 3 chr21 34539181 34539482 -10368088 - AluY SINE Alu -11 300 1 1532 176 0 43 chr21 34539482 34539730 -10367840 - AluJo SINE Alu -45 267 31 1702 152 47 7 chr21 34539733 34539849 -10367721 + AluJb SINE Alu 5 115 -197 213 65 0 0 chr21 34539849 34539880 -10367690 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1702 152 47 7 chr21 34539880 34540039 -10367531 + AluJb SINE Alu 115 291 -21 1842 135 57 7 chr21 34540289 34540570 -10367000 - AluSx SINE Alu -17 295 1 522 301 78 33 chr21 34540701 34541007 -10366563 - HAL1b LINE L1 -746 602 283 748 180 0 43 chr21 34541026 34541165 -10366405 - FLAM_C SINE Alu 0 133 1 2322 94 0 3 chr21 34541176 34541484 -10366086 - AluSg SINE Alu -3 307 1 1935 141 31 3 chr21 34541484 34541774 -10365796 - AluSx SINE Alu -13 299 1 2283 103 3 13 chr21 34541776 34542077 -10365493 - AluSp SINE Alu -15 298 1 350 45 0 0 chr21 34542093 34542137 -10365433 - AluSq/x SINE Alu -176 127 84 1051 207 5 27 chr21 34542138 34542360 -10365210 - AluJo SINE Alu -95 217 1 1201 125 11 5 chr21 34542432 34542616 -10364954 - AluSg/x SINE Alu -1 311 127 2493 84 0 0 chr21 34542618 34542929 -10364641 - AluY SINE Alu 0 311 1 7043 55 14 0 chr21 34543189 34544705 -10362865 - L1PA7 LINE L1 0 6154 4630 12646 98 7 29 chr21 34544705 34547004 -10360566 - L1P3 LINE L1 -4166 2295 7 1316 132 209 39 chr21 34547096 34547354 -10360216 - AluJb SINE Alu 0 302 1 236 286 48 12 chr21 34547597 34547681 -10359889 + L2 LINE L2 2870 2956 -316 1768 163 35 14 chr21 34547767 34548056 -10359514 + AluJo SINE Alu 4 298 -14 2472 41 41 0 chr21 34548060 34548353 -10359217 + AluY SINE Alu 1 305 -6 1599 183 13 41 chr21 34548357 34548533 -10359037 - AluJb SINE Alu -4 308 143 2325 98 3 0 chr21 34548533 34548830 -10358740 - AluSp SINE Alu -15 298 1 1599 183 13 41 chr21 34548830 34548970 -10358600 - AluJb SINE Alu -169 143 1 1950 124 21 0 chr21 34548995 34549278 -10358292 - AluSx SINE Alu -23 289 1 2378 70 7 13 chr21 34549295 34549595 -10357975 - AluSp SINE Alu -15 298 1 254 248 0 30 chr21 34550207 34550308 -10357262 + G-rich Low_complexity Low_complexity 2 99 0 263 266 89 55 chr21 34551088 34551325 -10356245 - L1ME LINE L1 -662 5502 5258 195 100 0 0 chr21 34551398 34551428 -10356142 + (T)n Simple_repeat Simple_repeat 1 30 0 237 186 29 57 chr21 34551544 34551614 -10355956 + CT-rich Low_complexity Low_complexity 3 70 0 894 170 85 19 chr21 34551922 34552134 -10355436 + MER58 DNA MER1_type 1 224 -2196 538 144 30 106 chr21 34552171 34552232 -10355338 + L1MC3 LINE L1 6085 6132 -1653 2097 138 3 0 chr21 34552232 34552537 -10355033 - AluSx SINE Alu -6 306 1 538 144 30 106 chr21 34552537 34552607 -10354963 + L1MC3 LINE L1 6132 6206 -1579 422 268 147 23 chr21 34552722 34552987 -10354583 - HAL1 LINE L1 -289 2218 1921 233 239 30 15 chr21 34553009 34553076 -10354494 - HAL1 LINE L1 -665 1842 1775 611 254 88 14 chr21 34553123 34553340 -10354230 + MIR SINE MIR 30 262 0 454 214 94 50 chr21 34553400 34553559 -10354011 - HAL1 LINE L1 -810 1697 1532 462 257 97 58 chr21 34553580 34553745 -10353825 - HAL1 LINE L1 -1160 1347 1190 2328 81 3 0 chr21 34553745 34554040 -10353530 - AluSp SINE Alu -17 296 1 462 257 97 58 chr21 34554040 34554144 -10353426 - HAL1 LINE L1 -1317 1190 1092 2483 57 0 10 chr21 34554144 34554442 -10353128 - AluY SINE Alu -16 295 1 462 257 97 58 chr21 34554442 34554572 -10352998 - HAL1 LINE L1 -1415 1092 969 2286 96 0 7 chr21 34554572 34554873 -10352697 - AluSq SINE Alu -13 300 2 462 257 97 58 chr21 34554873 34555022 -10352548 - HAL1 LINE L1 -1538 969 695 23 68 0 0 chr21 34555054 34555098 -10352472 + AT_rich Low_complexity Low_complexity 1 44 0 867 186 102 23 chr21 34555310 34555525 -10352045 - L1MB2 LINE L1 0 6171 5940 1185 184 164 16 chr21 34555525 34555769 -10351801 + Tigger7 DNA MER2_type 1 280 -453 496 191 228 35 chr21 34555757 34555801 -10351769 + Tigger7 DNA MER2_type 2328 2362 -125 * 2274 85 24 0 chr21 34555801 34556094 -10351476 + AluSq SINE Alu 5 304 -9 496 191 228 35 chr21 34556094 34556107 -10351463 + Tigger7 DNA MER2_type 2362 2371 -116 1880 130 25 7 chr21 34556107 34556384 -10351186 + AluSx SINE Alu 1 282 -30 496 191 228 35 chr21 34556384 34556525 -10351045 + Tigger7 DNA MER2_type 2371 2487 0 580 153 102 15 chr21 34556527 34556654 -10350916 - L1MB2 LINE L1 -242 5929 5815 2280 133 88 94 chr21 34556654 34556684 -10350886 - LTR54 LTR ERV1 0 510 481 2206 87 3 10 chr21 34556684 34556983 -10350587 - AluSx SINE Alu -15 297 1 2280 133 88 94 chr21 34556983 34557018 -10350552 - LTR54 LTR ERV1 -29 481 447 1924 117 57 10 chr21 34557018 34557317 -10350253 - AluSq SINE Alu 0 313 1 2280 133 88 94 chr21 34557317 34557740 -10349830 - LTR54 LTR ERV1 -63 447 22 2195 126 0 0 chr21 34557740 34558042 -10349528 - AluSx SINE Alu -10 302 1 2280 133 88 94 chr21 34558042 34558064 -10349506 - LTR54 LTR ERV1 -488 22 1 282 241 13 38 chr21 34558076 34558155 -10349415 + MER21B LTR ERV1 3 79 -784 1835 117 37 30 chr21 34558208 34558506 -10349064 - AluSx SINE Alu -12 300 1 955 135 0 0 chr21 34558509 34558642 -10348928 - AluSq/x SINE Alu -180 133 1 987 77 0 266 chr21 34558662 34558876 -10348694 + MER30 DNA MER1_type 13 128 -102 2278 104 0 7 chr21 34558876 34559183 -10348387 + AluSx SINE Alu 1 305 -7 987 77 0 266 chr21 34559183 34559265 -10348305 + MER30 DNA MER1_type 128 230 0 346 229 57 28 chr21 34559265 34559382 -10348188 + MER21B LTR ERV1 499 682 -249 3248 130 20 19 chr21 34559424 34559716 -10347854 + MER4E LTR ERV1 1 291 -475 2129 142 3 0 chr21 34559716 34560027 -10347543 - AluSq SINE Alu -1 312 1 3248 130 20 19 chr21 34560027 34560536 -10347034 + MER4E LTR ERV1 291 766 0 448 276 91 26 chr21 34560543 34560775 -10346795 - Charlie2 DNA MER1_type -2579 283 37 2418 80 0 13 chr21 34561182 34561493 -10346077 + AluY SINE Alu 1 307 -4 770 211 169 81 chr21 34561659 34561727 -10345843 - MER57A LTR ERV1 -2 401 340 1812 150 3 7 chr21 34561727 34562013 -10345557 + AluJo SINE Alu 5 289 -23 2045 137 0 3 chr21 34562018 34562311 -10345259 + AluSx SINE Alu 1 292 -20 770 211 169 81 chr21 34562311 34562642 -10344928 - MER57A LTR ERV1 -66 337 1 2443 67 3 3 chr21 34562652 34562952 -10344618 - AluY SINE Alu -11 300 1 1530 183 114 69 chr21 34563061 34563454 -10344116 - MER110 LTR ERV1 -29 462 52 2444 73 0 16 chr21 34563636 34563952 -10343618 - AluY SINE Alu 0 311 1 909 156 0 44 chr21 34563955 34564115 -10343455 + AluJb SINE Alu 121 273 -39 28 29 0 0 chr21 34564274 34564309 -10343261 + AT_rich Low_complexity Low_complexity 1 35 0 778 199 0 0 chr21 34564333 34564464 -10343106 - FLAM_A SINE Alu -2 131 1 1576 162 43 10 chr21 34564712 34565014 -10342556 + AluJb SINE Alu 1 312 0 2245 98 10 10 chr21 34565176 34565481 -10342089 - AluSx SINE Alu -7 305 1 2171 119 0 16 chr21 34565784 34566096 -10341474 - AluSq SINE Alu -6 307 1 2179 118 0 3 chr21 34566096 34566401 -10341169 - AluSx SINE Alu 0 312 9 188 273 78 26 chr21 34567322 34567399 -10340171 - MIR SINE MIR -91 171 91 317 231 18 0 chr21 34567425 34567492 -10340078 - MIR SINE MIR -102 106 38 189 0 0 0 chr21 34567531 34567552 -10340018 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1259 189 169 8 chr21 34568271 34568525 -10339045 + AluJo SINE Alu 1 295 -7 2245 96 3 0 chr21 34568993 34569284 -10338286 - AluSq SINE Alu -21 292 1 264 59 0 0 chr21 34569367 34569401 -10338169 + (A)n Simple_repeat Simple_repeat 1 34 0 3008 161 75 80 chr21 34569739 34569862 -10337708 - L1MD1 LINE L1 0 6242 6120 2453 67 0 0 chr21 34569862 34570160 -10337410 + AluY SINE Alu 1 298 -13 3008 161 75 80 chr21 34570160 34570488 -10337082 - L1MD1 LINE L1 -122 6120 5791 2054 137 3 6 chr21 34570488 34570802 -10336768 - AluSq SINE Alu 0 313 1 3008 161 75 80 chr21 34570802 34571117 -10336453 - L1MD1 LINE L1 -451 5791 5476 1853 123 0 58 chr21 34571813 34572123 -10335447 + AluSg SINE Alu 3 294 -16 1856 151 0 28 chr21 34572252 34572569 -10335001 - AluJb SINE Alu -4 308 1 2184 122 0 0 chr21 34572602 34572906 -10334664 + AluSq SINE Alu 1 304 -9 2202 110 7 0 chr21 34572959 34573259 -10334311 - AluSp SINE Alu -11 302 1 2222 127 0 0 chr21 34573304 34573612 -10333958 - AluSg SINE Alu -2 308 1 528 115 0 35 chr21 34573998 34574085 -10333485 - AluSg/x SINE Alu -20 292 209 243 289 69 25 chr21 34574108 34574267 -10333303 - L1ME4a LINE L1 -158 5963 5798 318 115 0 0 chr21 34575062 34575114 -10332456 + (TCCCC)n Simple_repeat Simple_repeat 5 56 0 1891 119 14 27 chr21 34575123 34575279 -10332291 - AluSx SINE Alu -22 290 138 2138 124 0 3 chr21 34575279 34575585 -10331985 - AluSc SINE Alu -4 305 1 1891 119 14 27 chr21 34575585 34575722 -10331848 - AluSx SINE Alu -174 138 1 827 158 79 0 chr21 34575725 34575864 -10331706 - AluSc SINE Alu -18 291 142 1834 152 7 0 chr21 34575874 34576184 -10331386 - AluSx SINE Alu 0 312 1 257 196 36 159 chr21 34576187 34576275 -10331295 - MIR SINE MIR -62 200 133 1590 175 3 52 chr21 34576275 34576391 -10331179 + AluJo SINE Alu 1 121 -191 1560 199 3 7 chr21 34576391 34576693 -10330877 + AluJb SINE Alu 1 301 0 1590 175 3 52 chr21 34576693 34576900 -10330670 + AluJo SINE Alu 121 309 -3 257 196 36 159 chr21 34576900 34576949 -10330621 - MIR SINE MIR -129 133 80 306 269 88 88 chr21 34577536 34577785 -10329785 - L2 LINE L2 -210 3062 2814 2330 97 0 10 chr21 34578263 34578573 -10328997 - AluSq SINE Alu -5 308 2 1915 136 26 19 chr21 34578743 34579052 -10328518 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr21 34579499 34579529 -10328041 + AT_rich Low_complexity Low_complexity 1 30 0 249 189 0 81 chr21 34579797 34579871 -10327699 - LTR50 LTR ERVL -722 73 6 1537 197 3 10 chr21 34579888 34580183 -10327387 + AluJb SINE Alu 1 293 -19 772 171 32 2 chr21 34580185 34580428 -10327142 + AluJ SINE Alu 3 302 -10 406 223 14 65 chr21 34580430 34580569 -10327001 + L1M4 LINE L1 3201 3332 -2814 2247 178 82 53 chr21 34580723 34580923 -10326647 - L1MA4 LINE L1 -15 6285 6092 2128 120 3 13 chr21 34580923 34581231 -10326339 - AluSc SINE Alu -4 305 1 2247 178 82 53 chr21 34581231 34581557 -10326013 - L1MA4 LINE L1 -208 6092 5744 1490 162 0 19 chr21 34581546 34581805 -10325765 + L1MA4 LINE L1 5490 5743 -561 * 430 313 120 21 chr21 34581788 34582305 -10325265 + L1M4 LINE L1 3634 4207 -1939 * 1314 160 49 0 chr21 34582305 34582530 -10325040 - MER46A DNA MER2_type 0 236 1 430 313 120 21 chr21 34582530 34582545 -10325025 + L1M4 LINE L1 4207 4219 -1927 672 177 115 0 chr21 34582558 34582688 -10324882 - Tigger2 DNA MER2_type -13 2705 2561 1018 172 0 6 chr21 34582688 34582857 -10324713 + AluJo SINE Alu 136 303 -9 328 110 171 0 chr21 34582860 34582942 -10324628 - Tigger2 DNA MER2_type -141 2577 2482 2400 92 0 0 chr21 34582942 34583246 -10324324 + AluSc SINE Alu 1 304 -5 299 109 22 0 chr21 34583269 34583315 -10324255 + AluSx SINE Alu 1 47 -255 256 111 0 0 chr21 34583309 34583345 -10324225 - tRNA-Glu-GAG tRNA tRNA -39 36 1 * 1870 134 0 44 chr21 34583350 34583445 -10324125 + AluSx SINE Alu 27 125 -187 2058 113 0 57 chr21 34583445 34583763 -10323807 - AluSx SINE Alu -12 300 1 1870 134 0 44 chr21 34583763 34583965 -10323605 + AluSx SINE Alu 125 311 -1 7447 128 62 27 chr21 34583965 34584177 -10323393 - Tigger2 DNA MER2_type -232 2486 2283 2113 97 66 0 chr21 34584177 34584466 -10323104 - AluSg SINE Alu 0 310 3 7447 128 62 27 chr21 34584466 34585533 -10322037 - Tigger2 DNA MER2_type -435 2283 1162 1066 141 11 43 chr21 34585533 34585717 -10321853 + AluJo SINE Alu 1 178 -134 2574 149 84 4 chr21 34585719 34586350 -10321220 - Tigger2 DNA MER2_type -2002 716 2 440 318 62 11 chr21 34586870 34587049 -10320521 + MIR SINE MIR 4 191 -71 22 0 0 0 chr21 34587278 34587300 -10320270 + AT_rich Low_complexity Low_complexity 1 22 0 678 159 80 0 chr21 34587301 34587414 -10320156 - FLAM_C SINE Alu -10 123 2 2501 82 0 0 chr21 34587597 34587902 -10319668 - AluSx SINE Alu -3 309 5 2122 134 0 13 chr21 34587964 34588278 -10319292 + AluSp SINE Alu 1 310 -3 814 158 8 0 chr21 34588348 34588475 -10319095 + FLAM_C SINE Alu 10 137 -6 25 31 0 0 chr21 34588483 34588515 -10319055 + AT_rich Low_complexity Low_complexity 1 32 0 2354 99 0 0 chr21 34588541 34588844 -10318726 - AluY SINE Alu -8 303 1 806 165 8 0 chr21 34589178 34589299 -10318271 - FLAM_A SINE Alu -11 122 1 227 208 188 0 chr21 34589336 34589384 -10318186 - AluS SINE Alu -246 57 1 189 107 0 0 chr21 34589394 34589422 -10318148 + (TTTCC)n Simple_repeat Simple_repeat 1 28 0 1377 153 44 4 chr21 34589422 34589651 -10317919 - AluJb SINE Alu -5 307 70 202 281 35 0 chr21 34590556 34590613 -10316957 - L2 LINE L2 -219 3053 2995 2119 94 0 0 chr21 34590688 34590953 -10316617 + AluSq SINE Alu 34 298 -15 2342 99 10 0 chr21 34591132 34591434 -10316136 + AluSx SINE Alu 6 310 -2 2171 98 32 0 chr21 34591470 34591755 -10315815 + AluSq SINE Alu 1 294 -19 887 132 0 76 chr21 34592111 34592136 -10315434 - FLAM_C SINE Alu -169 133 108 1951 132 3 7 chr21 34592136 34592424 -10315146 + AluSx SINE Alu 11 297 -15 887 132 0 76 chr21 34592424 34592542 -10315028 - FLAM_C SINE Alu -194 108 1 1902 147 73 45 chr21 34592942 34593010 -10314560 - MER47A DNA MER2_type -1958 365 300 1862 154 20 0 chr21 34593010 34593302 -10314268 + AluSx SINE Alu 8 305 -7 1902 147 73 45 chr21 34593302 34593588 -10313982 - MER47A DNA MER2_type -2023 300 1 523 190 52 0 chr21 34593659 34593775 -10313795 - MER58C DNA MER1_type -30 185 64 859 136 216 17 chr21 34594347 34594523 -10313047 + AluJb SINE Alu 83 293 -19 2544 70 0 0 chr21 34594637 34594936 -10312634 + AluSx SINE Alu 3 301 -11 2068 124 3 3 chr21 34595449 34595747 -10311823 - AluSq SINE Alu -15 298 1 2440 84 17 22 chr21 34595897 34596252 -10311318 - L1PA16 LINE L1 -8 6158 5806 1836 154 14 3 chr21 34596328 34596620 -10310950 - AluSx SINE Alu -17 295 1 507 314 163 10 chr21 34596756 34597142 -10310428 + HAL1 LINE L1 166 610 -1897 759 291 137 35 chr21 34597363 34597940 -10309630 + HAL1 LINE L1 1146 1781 -726 213 258 159 18 chr21 34598168 34598331 -10309239 - L2 LINE L2 -874 2440 2255 2058 135 0 3 chr21 34598459 34598756 -10308814 + AluSx SINE Alu 1 296 -16 1810 100 89 19 chr21 34599810 34600081 -10307489 + AluSx SINE Alu 1 290 -22 292 244 53 23 chr21 34600153 34600284 -10307286 + MER20B DNA MER1_type 4 138 -645 315 71 0 0 chr21 34600464 34600506 -10307064 + (TA)n Simple_repeat Simple_repeat 2 43 0 2232 118 3 13 chr21 34600519 34600834 -10306736 - AluSx SINE Alu 0 312 1 236 140 193 18 chr21 34600857 34600914 -10306656 - MLT1J LTR MaLR -354 157 91 2053 178 11 8 chr21 34601186 34601551 -10306019 - MER47A DNA MER2_type 0 366 1 2187 102 3 0 chr21 34601661 34601978 -10305592 - AluSp SINE Alu 0 318 1 2346 84 0 0 chr21 34602923 34603209 -10304361 + AluSx SINE Alu 1 286 -26 2225 116 3 0 chr21 34603209 34603502 -10304068 + AluSq SINE Alu 3 296 -17 340 196 0 52 chr21 34603919 34603950 -10303620 - MER103 DNA DNA -73 93 62 2156 128 0 3 chr21 34603950 34604255 -10303315 - AluSx SINE Alu -7 305 2 340 196 0 52 chr21 34604255 34604320 -10303250 - MER103 DNA DNA -104 62 2 1119 199 19 19 chr21 34604378 34604584 -10302986 + AluJo SINE Alu 1 206 -106 1453 155 16 4 chr21 34604584 34604835 -10302735 - AluJb SINE Alu -58 254 1 30 27 0 0 chr21 34606452 34606489 -10301081 + AT_rich Low_complexity Low_complexity 1 37 0 2456 69 3 0 chr21 34606699 34606990 -10300580 + AluSp SINE Alu 1 292 -21 706 296 12 6 chr21 34607700 34607872 -10299698 + MER5B DNA MER1_type 6 178 0 2299 92 0 0 chr21 34608279 34608561 -10299009 + AluSc SINE Alu 1 282 -27 246 276 178 27 chr21 34608604 34608789 -10298781 - L1MC/D LINE L1 -2150 5658 5446 2082 139 10 7 chr21 34609001 34609311 -10298259 - AluJb SINE Alu -1 311 1 2071 136 13 3 chr21 34609740 34610049 -10297521 - AluJb SINE Alu 0 312 1 599 162 0 20 chr21 34610344 34610443 -10297127 - AluJ/FLAM SINE Alu -215 97 1 1648 170 0 28 chr21 34610458 34610741 -10296829 - AluJb SINE Alu -24 288 14 381 235 162 0 chr21 34610813 34610949 -10296621 - L1MC5 LINE L1 -1154 6807 6650 1979 157 3 6 chr21 34610976 34611288 -10296282 - AluJo SINE Alu -1 311 1 1070 254 124 9 chr21 34611498 34611566 -10296004 - L1ME2 LINE L1 -311 5853 5794 2505 174 56 28 chr21 34611566 34612067 -10295503 - MLT2B2 LTR ERVL 0 515 1 1070 254 124 9 chr21 34612067 34612392 -10295178 - L1ME2 LINE L1 -370 5794 5467 1030 109 67 0 chr21 34612394 34612559 -10295011 - AluSg/x SINE Alu -1 309 134 234 0 0 0 chr21 34612560 34612586 -10294984 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2152 108 3 3 chr21 34612586 34612872 -10294698 - AluSq SINE Alu -27 286 1 310 208 130 13 chr21 34612872 34612949 -10294621 - HAL1 LINE L1 -1341 1166 1081 1971 140 7 29 chr21 34612953 34613261 -10294309 - AluSx SINE Alu -11 301 1 2571 62 0 0 chr21 34613508 34613812 -10293758 - AluY SINE Alu -6 305 2 194 321 38 47 chr21 34614182 34614288 -10293282 - MER5A DNA MER1_type -25 164 60 223 246 14 58 chr21 34614938 34615007 -10292563 + L2 LINE L2 3207 3272 0 21 0 0 0 chr21 34615027 34615048 -10292522 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr21 34615435 34615475 -10292095 + GC_rich Low_complexity Low_complexity 1 40 0 1479 148 102 0 chr21 34616206 34616462 -10291108 + AluJo SINE Alu 1 282 -30 2362 107 0 0 chr21 34616579 34616879 -10290691 - AluSx SINE Alu -12 300 1 1866 163 10 3 chr21 34617085 34617386 -10290184 - AluJb SINE Alu -9 303 1 2490 70 0 13 chr21 34617686 34617988 -10289582 - AluSq SINE Alu -15 298 1 2338 88 17 0 chr21 34618334 34618630 -10288940 - AluSq SINE Alu -10 303 3 2151 134 3 10 chr21 34619186 34619492 -10288078 + AluSx SINE Alu 1 304 -8 378 0 0 0 chr21 34619625 34619667 -10287903 + (TG)n Simple_repeat Simple_repeat 1 42 0 2520 90 3 0 chr21 34619917 34620227 -10287343 + AluSp SINE Alu 1 311 -2 775 197 15 71 chr21 34620414 34620534 -10287036 - MIR SINE MIR -2 260 154 1801 160 3 3 chr21 34620534 34620821 -10286749 - AluJo SINE Alu -25 287 1 775 197 15 71 chr21 34620821 34620898 -10286672 - MIR SINE MIR -108 154 74 249 43 255 21 chr21 34621204 34621251 -10286319 - AluY SINE Alu -162 139 82 839 84 0 0 chr21 34621251 34621358 -10286212 + AluSg/x SINE Alu 205 311 -1 1175 137 34 94 chr21 34621605 34621786 -10285784 - AluJb SINE Alu -11 301 136 10348 67 40 5 chr21 34621786 34623120 -10284450 - SVA Other Other 0 1386 6 1175 137 34 94 chr21 34623120 34623172 -10284398 - AluJb SINE Alu -176 136 82 2572 68 0 7 chr21 34623312 34623619 -10283951 - AluSp SINE Alu -8 305 1 1859 173 3 7 chr21 34623763 34623930 -10283640 - AluSx SINE Alu -10 302 135 2283 87 3 23 chr21 34623930 34624240 -10283330 - AluSc SINE Alu -5 304 1 1859 173 3 7 chr21 34624240 34624373 -10283197 - AluSx SINE Alu -177 135 3 2378 107 3 0 chr21 34624596 34624896 -10282674 - AluSx SINE Alu -11 301 1 2164 113 20 0 chr21 34624911 34625213 -10282357 - AluSq SINE Alu -5 308 1 2072 128 3 0 chr21 34625869 34626165 -10281405 - AluSx SINE Alu -15 297 1 231 36 0 0 chr21 34626224 34626252 -10281318 + (A)n Simple_repeat Simple_repeat 1 28 0 1738 148 78 7 chr21 34626258 34626541 -10281029 + AluJb SINE Alu 2 304 -8 259 344 205 8 chr21 34626917 34627176 -10280394 + L2 LINE L2 2957 3266 -6 1961 132 20 26 chr21 34627585 34627889 -10279681 - AluSx SINE Alu -10 302 1 1904 160 0 4 chr21 34627921 34628202 -10279368 - AluJb SINE Alu -15 297 18 2204 134 0 10 chr21 34628211 34628525 -10279045 - AluSx SINE Alu -1 311 1 2430 74 7 3 chr21 34628902 34629201 -10278369 - AluSx SINE Alu -12 300 1 365 230 138 115 chr21 34629699 34629762 -10277808 - MER5B DNA MER1_type 0 178 118 2004 133 7 10 chr21 34629762 34630063 -10277507 + AluSx SINE Alu 1 300 -12 2108 135 30 0 chr21 34630063 34630367 -10277203 + AluSq SINE Alu 1 313 0 365 230 138 115 chr21 34630367 34630476 -10277094 - MER5B DNA MER1_type -59 119 1 2165 111 3 0 chr21 34630853 34631142 -10276428 + AluSq SINE Alu 3 292 -21 254 143 67 0 chr21 34631142 34631247 -10276323 + (TA)n Simple_repeat Simple_repeat 1 112 0 320 261 80 93 chr21 34631247 34631537 -10276033 - L1MC5 LINE L1 -151 7777 5669 2177 122 0 0 chr21 34631611 34631905 -10275665 - AluSx SINE Alu -17 295 2 920 145 55 7 chr21 34632036 34632181 -10275389 + FRAM SINE Alu 1 150 -26 25 0 0 0 chr21 34632587 34632612 -10274958 + AT_rich Low_complexity Low_complexity 1 25 0 711 219 24 35 chr21 34632822 34632991 -10274579 - MER5B DNA MER1_type -4 174 8 2212 126 7 3 chr21 34633041 34633350 -10274220 + AluSx SINE Alu 1 310 -2 2386 76 3 10 chr21 34633962 34634264 -10273306 - AluSg SINE Alu -10 300 1 2407 61 3 14 chr21 34634265 34634593 -10272977 - AluSp SINE Alu 0 313 7 2380 94 0 28 chr21 34634598 34634916 -10272654 - AluSx SINE Alu -3 309 1 272 332 122 35 chr21 34634947 34635287 -10272283 + L1MC/D LINE L1 4051 4360 -1786 1907 143 0 14 chr21 34635287 34635594 -10271976 - AluJo SINE Alu 0 305 3 272 332 122 35 chr21 34635594 34636000 -10271570 + L1MC/D LINE L1 4360 4863 -1283 2238 107 7 0 chr21 34636162 34636451 -10271119 - AluSq SINE Alu -22 291 1 995 157 56 0 chr21 34636454 34636670 -10270900 - L1MA8 LINE L1 0 6291 6064 350 293 67 6 chr21 34636677 34636841 -10270729 + L1P LINE L1 4881 5054 -1092 2334 107 0 0 chr21 34636885 34637183 -10270387 + AluSx SINE Alu 1 298 -14 281 282 99 15 chr21 34637185 34637316 -10270254 + L1MC/D LINE L1 5681 5822 -1986 2312 98 0 3 chr21 34637560 34637857 -10269713 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr21 34637877 34637899 -10269671 + AT_rich Low_complexity Low_complexity 1 22 0 2268 103 0 0 chr21 34638730 34639020 -10268550 - AluSq SINE Alu -23 290 1 989 98 0 0 chr21 34639033 34639166 -10268404 - AluSq/x SINE Alu -180 133 1 39 38 0 0 chr21 34639452 34639505 -10268065 + AT_rich Low_complexity Low_complexity 1 53 0 1077 112 0 0 chr21 34639520 34639663 -10267907 - AluJb SINE Alu -169 143 1 2341 111 3 0 chr21 34639822 34640128 -10267442 - AluSx SINE Alu -5 307 1 1045 251 112 27 chr21 34640130 34640536 -10267034 - L1MEc LINE L1 -5002 1394 919 1656 149 36 0 chr21 34640536 34640785 -10266785 - AluSx SINE Alu -13 299 42 1045 251 112 27 chr21 34640785 34640979 -10266591 - L1MEc LINE L1 -5477 919 743 2074 150 0 0 chr21 34640979 34641279 -10266291 - AluSx SINE Alu -12 300 1 2105 138 3 0 chr21 34641589 34641893 -10265677 - AluSx SINE Alu -7 305 1 2269 96 7 7 chr21 34642235 34642527 -10265043 - AluSx SINE Alu -20 292 1 1934 152 0 3 chr21 34644472 34644778 -10262792 - AluSx SINE Alu 0 305 1 940 209 75 5 chr21 34645491 34645611 -10261959 - MER20 DNA MER1_type -3 216 75 2370 97 0 3 chr21 34645611 34645919 -10261651 - AluSx SINE Alu -5 307 1 940 209 75 5 chr21 34645919 34645999 -10261571 - MER20 DNA MER1_type -144 75 2 250 272 140 0 chr21 34646699 34646835 -10260735 - L1ME4a LINE L1 0 6121 5967 1247 109 0 0 chr21 34646942 34647107 -10260463 - AluJb SINE Alu -17 295 131 227 200 0 17 chr21 34647134 34647194 -10260376 + (TA)n Simple_repeat Simple_repeat 1 59 0 2375 113 0 0 chr21 34647194 34647495 -10260075 - AluSx SINE Alu -11 301 1 958 124 0 7 chr21 34647495 34647632 -10259938 - AluJb SINE Alu -176 136 1 772 273 30 0 chr21 34647653 34647818 -10259752 - MER5B DNA MER1_type -2 176 7 2358 82 3 0 chr21 34647883 34648177 -10259393 - AluSg SINE Alu -15 295 1 2438 107 0 0 chr21 34648434 34648743 -10258827 + AluSx SINE Alu 3 311 -1 225 204 41 0 chr21 34649724 34649773 -10257797 + MIR SINE MIR 90 140 -122 324 0 0 0 chr21 34650202 34650238 -10257332 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 260 271 21 31 chr21 34650260 34650356 -10257214 - L2 LINE L2 -54 3259 3165 1366 160 49 38 chr21 34651080 34651343 -10256227 - AluJo SINE Alu -16 296 31 2316 84 30 0 chr21 34651345 34651641 -10255929 - AluSg SINE Alu -5 305 1 1794 205 114 2 chr21 34652706 34653170 -10254400 - LTR53 LTR ERVL -1 518 3 365 293 47 13 chr21 34653316 34653486 -10254084 + MIR3 SINE MIR 13 192 -62 2350 92 0 0 chr21 34653501 34653794 -10253776 - AluSg SINE Alu -17 293 1 995 244 32 22 chr21 34653883 34654183 -10253387 - MLT2D LTR ERVL -35 379 76 188 299 51 51 chr21 34654259 34654376 -10253194 + MIR SINE MIR 32 148 -114 569 276 44 11 chr21 34654538 34654719 -10252851 + MIR SINE MIR 6 192 -70 805 148 127 21 chr21 34654953 34655095 -10252475 + FRAM SINE Alu 4 160 -6 2149 112 0 20 chr21 34655545 34655841 -10251729 + AluSx SINE Alu 13 302 -10 1027 213 97 9 chr21 34655895 34656224 -10251346 - MLT1C LTR MaLR 0 467 110 2207 125 0 3 chr21 34656226 34656531 -10251039 - AluSx SINE Alu -8 304 1 2147 113 3 3 chr21 34656536 34656847 -10250723 + THE1B LTR MaLR 54 364 0 334 174 130 0 chr21 34656847 34656938 -10250632 - MLT1C LTR MaLR -358 109 7 374 276 86 0 chr21 34657236 34657352 -10250218 - MIR SINE MIR -130 132 7 695 148 0 0 chr21 34657522 34657630 -10249940 + FLAM_C SINE Alu 34 141 -2 2382 71 3 0 chr21 34657920 34658238 -10249332 - AluSx SINE Alu 0 321 3 2083 118 23 26 chr21 34658242 34658546 -10249024 - AluSx SINE Alu -9 303 1 413 220 150 65 chr21 34658574 34658774 -10248796 - L2 LINE L2 -225 3047 2831 260 320 122 30 chr21 34658810 34659007 -10248563 - L2 LINE L2 -599 2715 2501 285 353 50 25 chr21 34659248 34659449 -10248121 - L3 LINE CR1 -27 1550 1345 1818 147 4 4 chr21 34659449 34659722 -10247848 + AluJb SINE Alu 1 273 -39 1420 145 0 0 chr21 34660395 34660602 -10246968 - AluJb SINE Alu -12 300 94 1405 174 147 67 chr21 34660614 34660933 -10246637 + MLT1C LTR MaLR 1 364 -103 2111 136 0 3 chr21 34660933 34661234 -10246336 - AluSx SINE Alu -9 303 4 1405 174 147 67 chr21 34661234 34661344 -10246226 + MLT1C LTR MaLR 364 464 -3 867 222 66 33 chr21 34661346 34661461 -10246109 - L1M3 LINE L1 -575 5605 5495 2084 148 0 0 chr21 34661461 34661772 -10245798 - AluSx SINE Alu -1 311 1 867 222 66 33 chr21 34661772 34661899 -10245671 - L1M3 LINE L1 -685 5495 5355 2296 108 7 0 chr21 34661900 34662207 -10245363 - AluY SINE Alu -2 309 1 449 312 132 27 chr21 34662600 34663001 -10244569 + L2 LINE L2 2871 3313 0 210 71 0 0 chr21 34663307 34663335 -10244235 + (CCCA)n Simple_repeat Simple_repeat 3 30 0 2333 96 7 0 chr21 34663774 34664067 -10243503 - AluSg SINE Alu -15 295 1 189 291 101 13 chr21 34664113 34664192 -10243378 - MIR3 SINE MIR -6 202 117 2306 123 0 0 chr21 34664993 34665301 -10242269 + AluSx SINE Alu 1 308 -4 2156 90 0 75 chr21 34665597 34665919 -10241651 + AluSx SINE Alu 1 298 -14 2226 109 3 29 chr21 34665958 34666271 -10241299 + AluSx SINE Alu 1 305 -7 1480 138 93 12 chr21 34666376 34666622 -10240948 + AluSg SINE Alu 29 294 -16 300 236 0 0 chr21 34666763 34666818 -10240752 - L1MC4 LINE L1 -1339 6703 6649 298 222 62 62 chr21 34666979 34667123 -10240447 - MLT1J LTR MaLR -364 147 4 941 297 187 13 chr21 34667130 34667450 -10240120 - L2 LINE L2 -805 2509 2246 2027 106 95 0 chr21 34667450 34667723 -10239847 + AluSq SINE Alu 1 299 -14 941 297 187 13 chr21 34667723 34667938 -10239632 - L2 LINE L2 -1068 2246 1881 485 279 69 18 chr21 34668051 34668272 -10239298 - L1MC4 LINE L1 -458 5712 5508 287 298 94 49 chr21 34668346 34668397 -10239173 - L1MC4 LINE L1 -800 5346 5299 2504 84 0 0 chr21 34668397 34668706 -10238864 - AluSc SINE Alu 0 309 1 287 298 94 49 chr21 34668706 34669228 -10238342 - L1MC4 LINE L1 -847 5299 4747 308 264 27 18 chr21 34669229 34669339 -10238231 - MLT1K LTR MaLR 0 588 478 2399 97 3 0 chr21 34669744 34670043 -10237527 - AluSq SINE Alu -13 300 1 1499 100 0 0 chr21 34670211 34670401 -10237169 + AluSq SINE Alu 116 305 -8 3061 74 2 42 chr21 34670710 34671144 -10236426 - L1PA11 LINE L1 0 6174 5758 349 36 71 0 chr21 34671144 34671200 -10236370 + L1P LINE L1 5272 5331 -837 2043 128 4 0 chr21 34671200 34671502 -10236068 + AluSx SINE Alu 1 303 0 2273 123 0 0 chr21 34672009 34672317 -10235253 - AluSq SINE Alu -3 310 3 635 330 87 30 chr21 34672342 34672778 -10234792 - L1MC4 LINE L1 -3013 3133 2673 2402 91 3 0 chr21 34672863 34673171 -10234399 - AluY SINE Alu -2 309 1 1981 68 114 14 chr21 34673535 34673815 -10233755 + AluSg SINE Alu 1 308 -2 2193 101 18 21 chr21 34674017 34674343 -10233227 - L1PA8A LINE L1 0 6131 5807 1162 183 0 5 chr21 34674428 34674625 -10232945 + AluJo SINE Alu 113 308 -4 180 0 0 0 chr21 34674852 34674872 -10232698 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 681 205 0 0 chr21 34674879 34674996 -10232574 - FLAM_C SINE Alu -16 117 1 430 273 38 0 chr21 34675048 34675180 -10232390 - L1MA10 LINE L1 -1 6333 6197 338 289 53 53 chr21 34675199 34675351 -10232219 + HAL1b LINE L1 114 265 -1083 928 203 0 0 chr21 34675465 34675628 -10231942 - AluJb SINE Alu -3 309 147 396 268 56 14 chr21 34675814 34675956 -10231614 + L1M4 LINE L1 4019 4166 -1980 515 237 46 0 chr21 34676523 34676654 -10230916 - L2 LINE L2 -261 3052 2916 432 63 0 0 chr21 34677402 34677465 -10230105 - L1MB5 LINE L1 0 6174 6112 1334 139 19 5 chr21 34677469 34677677 -10229893 + AluSg/x SINE Alu 92 302 -8 600 157 17 105 chr21 34677677 34677849 -10229721 - L1MB5 LINE L1 -50 6124 5968 1811 174 7 7 chr21 34677934 34678239 -10229331 + AluJb SINE Alu 1 305 -7 2227 87 0 21 chr21 34678244 34678533 -10229037 - AluSx SINE Alu -25 287 5 263 238 25 12 chr21 34678536 34678616 -10228954 + L1M3 LINE L1 5817 5897 -286 * 1304 193 42 23 chr21 34678546 34678899 -10228671 - L1MB5 LINE L1 -190 5974 5618 2122 125 3 3 chr21 34679196 34679491 -10228079 - AluSx SINE Alu -17 295 1 2042 112 3 11 chr21 34680115 34680429 -10227141 + AluSx SINE Alu 3 314 0 184 364 52 0 chr21 34680453 34680530 -10227040 - L2 LINE L2 -49 3264 3184 417 277 61 105 chr21 34680664 34680758 -10226812 - HAL1 LINE L1 -1027 1480 1383 2549 51 3 3 chr21 34680758 34681054 -10226516 - AluY SINE Alu -15 296 1 417 277 61 105 chr21 34681054 34681170 -10226400 - HAL1 LINE L1 -1124 1383 1264 2523 88 0 0 chr21 34681170 34681475 -10226095 - AluSq SINE Alu -8 305 1 417 277 61 105 chr21 34681475 34681772 -10225798 - HAL1 LINE L1 -1243 1264 956 1637 101 0 0 chr21 34681772 34681979 -10225591 - AluSq SINE Alu -83 230 24 417 277 61 105 chr21 34681979 34682034 -10225536 - HAL1 LINE L1 -1551 956 900 1769 173 17 3 chr21 34682034 34682329 -10225241 - AluJo SINE Alu -13 299 1 417 277 61 105 chr21 34682329 34682528 -10225042 - HAL1 LINE L1 -1607 900 749 1267 181 20 109 chr21 34682655 34683003 -10224567 - AluYb8 SINE Alu -1 317 1 703 200 48 8 chr21 34683005 34683130 -10224440 - AluJo/FLAM SINE Alu -182 130 1 2342 95 7 0 chr21 34683238 34683533 -10224037 - AluSq SINE Alu -16 297 1 312 27 0 0 chr21 34684483 34684520 -10223050 + (CA)n Simple_repeat Simple_repeat 1 37 0 271 340 19 0 chr21 34685266 34685369 -10222201 + MIR SINE MIR 92 196 -66 1274 295 99 14 chr21 34685378 34685965 -10221605 + L2 LINE L2 1977 2613 -701 781 245 52 19 chr21 34687325 34687447 -10220123 + MIR SINE MIR 44 177 -85 1760 155 3 41 chr21 34687447 34687763 -10219807 + AluJo SINE Alu 7 310 -2 781 245 52 19 chr21 34687763 34687852 -10219718 + MIR SINE MIR 177 262 0 2099 134 0 0 chr21 34687939 34688229 -10219341 + AluSx SINE Alu 1 290 -22 2217 125 0 3 chr21 34688592 34688897 -10218673 + AluSx SINE Alu 1 304 -8 2265 119 3 0 chr21 34689811 34690114 -10217456 - AluSx SINE Alu -8 304 1 2334 70 40 7 chr21 34692504 34692806 -10214764 + AluSx SINE Alu 1 312 0 290 212 8 25 chr21 34692822 34692940 -10214630 + GA-rich Low_complexity Low_complexity 2 117 0 2048 112 4 4 chr21 34693290 34693567 -10214003 + AluSx SINE Alu 5 281 -31 227 31 31 0 chr21 34693570 34693602 -10213968 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2142 114 140 31 chr21 34693842 34694228 -10213342 + MSTA LTR MaLR 1 428 0 310 211 40 13 chr21 34694596 34694672 -10212898 - MIR SINE MIR -74 188 111 473 210 10 0 chr21 34694864 34694964 -10212606 + MER81 DNA DNA 2 102 -12 413 276 46 46 chr21 34695676 34695850 -10211720 + L3 LINE CR1 741 914 -663 304 260 42 21 chr21 34695946 34696042 -10211528 + MER103 DNA DNA 62 159 -7 2605 93 13 19 chr21 34696142 34696519 -10211051 - THE1C LTR MaLR 0 375 1 2141 103 6 12 chr21 34696519 34696839 -10210731 - THE1C-int LTR MaLR 0 1580 1263 2129 117 48 0 chr21 34698151 34698441 -10209129 + AluSx SINE Alu 1 304 -8 2392 112 0 0 chr21 34698602 34698914 -10208656 - AluSx SINE Alu 0 312 1 224 30 30 0 chr21 34699877 34699910 -10207660 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2009 185 32 57 chr21 34700023 34700498 -10207072 + MLT1C LTR MaLR 5 467 0 1750 193 0 7 chr21 34700544 34700850 -10206720 + AluSx SINE Alu 1 304 -8 793 184 7 7 chr21 34700940 34701081 -10206489 + FLAM_C SINE Alu 2 142 -1 448 318 68 0 chr21 34701865 34702013 -10205557 - MIR SINE MIR -20 242 85 699 284 83 15 chr21 34702017 34702281 -10205289 - L2 LINE L2 -662 2652 2371 845 192 94 64 chr21 34702282 34702473 -10205097 + MLT2D LTR ERVL 1 204 -210 1455 223 77 9 chr21 34702473 34702823 -10204747 - MLT1A2 LTR MaLR 0 374 1 845 192 94 64 chr21 34702823 34702897 -10204673 + MLT2D LTR ERVL 204 274 -140 254 263 26 13 chr21 34702907 34702983 -10204587 + MLT2C1 LTR ERVL 234 310 -104 1344 179 0 18 chr21 34703020 34703244 -10204326 - AluJo SINE Alu -92 220 1 661 134 0 79 chr21 34703246 34703373 -10204197 + MLT2C1 LTR ERVL 281 397 0 1331 274 98 34 chr21 34703378 34704001 -10203569 - L2 LINE L2 -938 2376 1714 1451 249 26 15 chr21 34704004 34704458 -10203112 + Charlie4a DNA MER1_type 28 486 -22 800 310 147 24 chr21 34704528 34705196 -10202374 - L2 LINE L2 -1580 1734 985 557 187 55 77 chr21 34705226 34705408 -10202162 - MER5B DNA MER1_type 0 178 1 905 166 5 55 chr21 34705434 34705597 -10201973 - AluJo SINE Alu -39 273 120 216 0 0 0 chr21 34705597 34705621 -10201949 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 905 166 5 55 chr21 34705621 34705656 -10201914 - AluJo SINE Alu -192 120 85 1164 125 18 18 chr21 34705663 34705831 -10201739 - AluSx SINE Alu -144 168 1 2320 102 0 0 chr21 34706312 34706607 -10200963 - AluSg SINE Alu -15 295 1 1029 209 6 0 chr21 34706908 34707085 -10200485 - MER45A DNA AcHobo 0 178 1 954 63 0 0 chr21 34712181 34712307 -10195263 + (TGGA)n Simple_repeat Simple_repeat 4 129 0 788 269 40 9 chr21 34712743 34712970 -10194600 - MIR SINE MIR -21 241 8 1389 215 40 60 chr21 34714219 34714555 -10193015 - MLT1C LTR MaLR -1 466 140 2262 97 7 3 chr21 34714555 34714854 -10192716 - AluSp SINE Alu -13 300 1 1389 215 40 60 chr21 34714854 34714987 -10192583 - MLT1C LTR MaLR -327 140 6 2137 133 7 3 chr21 34715049 34715351 -10192219 - AluSx SINE Alu -9 303 1 2377 105 0 0 chr21 34716819 34717125 -10190445 - AluSg SINE Alu -4 306 1 1240 195 42 0 chr21 34717806 34718067 -10189503 + L1MB3 LINE L1 5651 5922 -261 456 19 0 0 chr21 34718067 34718120 -10189450 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 2429 76 0 0 chr21 34718124 34718412 -10189158 - AluSc SINE Alu -21 288 1 1418 169 22 4 chr21 34718412 34718679 -10188891 + L1MB3 LINE L1 5910 6181 -2 1968 119 67 14 chr21 34718689 34718974 -10188596 + AluSx SINE Alu 1 300 -12 234 0 0 0 chr21 34718974 34719000 -10188570 + (TA)n Simple_repeat Simple_repeat 2 27 0 410 113 0 14 chr21 34719001 34719072 -10188498 + (GA)n Simple_repeat Simple_repeat 1 70 0 1372 152 0 68 chr21 34720058 34720217 -10187353 - AluJo SINE Alu -24 288 152 2375 108 0 6 chr21 34720217 34720531 -10187039 - AluSx SINE Alu 0 312 1 1372 152 0 68 chr21 34720531 34720634 -10186936 - AluJo SINE Alu -160 152 44 390 154 0 0 chr21 34720771 34720849 -10186721 + (CA)n Simple_repeat Simple_repeat 1 78 0 1031 234 121 35 chr21 34721762 34721864 -10185706 + MLT1C LTR MaLR 6 98 -369 2021 134 0 32 chr21 34721864 34721995 -10185575 + AluJb SINE Alu 1 135 -177 2973 9 0 0 chr21 34721995 34722311 -10185259 + AluYb8 SINE Alu 1 316 -2 2021 134 0 32 chr21 34722311 34722493 -10185077 + AluJb SINE Alu 135 304 -8 1031 234 121 35 chr21 34722493 34722761 -10184809 + MLT1C LTR MaLR 98 408 -59 2152 185 5 3 chr21 34724328 34724717 -10182853 + MLT1B LTR MaLR 1 390 0 2298 111 0 3 chr21 34724888 34725194 -10182376 + AluSq SINE Alu 1 305 -8 1262 242 91 15 chr21 34725570 34725967 -10181603 + MLT1C LTR MaLR 41 467 0 2084 140 0 19 chr21 34725992 34726300 -10181270 + AluJb SINE Alu 2 303 -9 258 114 0 23 chr21 34726503 34726547 -10181023 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 1398 79 0 4 chr21 34726547 34727267 -10180303 + (GGGA)n Simple_repeat Simple_repeat 1 717 0 2281 102 3 3 chr21 34727847 34728141 -10179429 - AluSq SINE Alu -17 296 3 827 105 32 0 chr21 34729097 34729221 -10178349 - AluSg/x SINE Alu -13 297 170 428 223 20 74 chr21 34729383 34729531 -10178039 + MER5A DNA MER1_type 50 189 0 2091 130 0 23 chr21 34730267 34730574 -10176996 - AluSx SINE Alu -12 300 1 362 252 119 25 chr21 34730709 34730868 -10176702 - MIR SINE MIR -14 248 75 324 0 0 0 chr21 34731175 34731211 -10176359 + (T)n Simple_repeat Simple_repeat 1 36 0 273 322 82 20 chr21 34731981 34732127 -10175443 - MIR SINE MIR -56 206 52 670 266 17 17 chr21 34732709 34732882 -10174688 + MER5B DNA MER1_type 6 178 0 2244 125 0 0 chr21 34732900 34733196 -10174374 - AluSx SINE Alu -16 296 1 1999 127 97 30 chr21 34733197 34733536 -10174034 + THE1B LTR MaLR 3 364 0 360 236 138 0 chr21 34733775 34733898 -10173672 - MER104 DNA Tc2 -2 178 39 1718 162 69 14 chr21 34733899 34734189 -10173381 + AluJo SINE Alu 1 306 -6 920 206 114 11 chr21 34734934 34735206 -10172364 + MER5C DNA MER1_type 25 324 0 769 293 44 23 chr21 34735783 34736157 -10171413 + L1MC4a LINE L1 5560 5950 -171 2207 139 0 0 chr21 34736157 34736466 -10171104 + AluSx SINE Alu 1 309 -3 769 293 44 23 chr21 34736466 34736552 -10171018 + L1MC4a LINE L1 5950 6033 -88 1921 157 3 23 chr21 34736679 34736979 -10170591 + AluJo SINE Alu 1 294 -18 2212 136 0 0 chr21 34737324 34737619 -10169951 + AluSx SINE Alu 1 295 -17 186 258 0 0 chr21 34737804 34737866 -10169704 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 2122 103 7 4 chr21 34739430 34739737 -10167833 - AluSg SINE Alu 0 308 1 211 353 0 0 chr21 34742510 34742578 -10164992 + (TG)n Simple_repeat Simple_repeat 1 68 0 919 266 50 31 chr21 34742959 34743383 -10164187 + MLT1L LTR MaLR 157 588 -27 1745 141 3 87 chr21 34743665 34743998 -10163572 - AluJb SINE Alu -7 305 1 360 0 0 0 chr21 34744465 34744505 -10163065 + (TG)n Simple_repeat Simple_repeat 2 41 0 180 133 50 33 chr21 34744513 34744573 -10162997 + GA-rich Low_complexity Low_complexity 5 65 0 1753 195 18 21 chr21 34744848 34745233 -10162337 + L1MB3 LINE L1 5445 5828 -355 2321 110 0 0 chr21 34745233 34745532 -10162038 + AluSx SINE Alu 1 299 -13 2523 77 0 3 chr21 34745620 34745930 -10161640 - AluSx SINE Alu -3 309 1 1305 144 46 53 chr21 34746643 34746668 -10160902 + MER58B DNA MER1_type 60 84 -2336 204 40 0 0 chr21 34746668 34746693 -10160877 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2200 101 3 0 chr21 34746696 34746982 -10160588 - AluSx SINE Alu -25 287 1 1305 144 46 53 chr21 34746982 34747236 -10160334 + MER58B DNA MER1_type 86 341 0 266 356 43 12 chr21 34747349 34747512 -10160058 + MER20B DNA MER1_type 1 168 -615 1486 243 33 8 chr21 34747554 34747910 -10159660 + MLT2D LTR ERVL 6 375 -39 315 71 0 0 chr21 34747910 34747952 -10159618 + (CA)n Simple_repeat Simple_repeat 2 43 0 1486 243 33 8 chr21 34747952 34747994 -10159576 + MLT2D LTR ERVL 375 414 0 2125 117 7 3 chr21 34748161 34748474 -10159096 + AluSx SINE Alu 1 312 0 693 86 65 0 chr21 34749176 34749269 -10158301 + AluSq/x SINE Alu 35 133 -179 2162 109 7 13 chr21 34749272 34749597 -10157973 + AluSx SINE Alu 1 312 0 1521 222 46 30 chr21 34749781 34750166 -10157404 - MLT1C LTR MaLR 0 467 72 2428 99 33 30 chr21 34750166 34750529 -10157041 + THE1B LTR MaLR 1 364 0 1521 222 46 30 chr21 34750529 34750603 -10156967 - MLT1C LTR MaLR -395 72 1 2017 138 0 3 chr21 34753307 34753686 -10153884 + AluSx SINE Alu 1 378 0 1840 143 3 26 chr21 34753957 34754264 -10153306 - AluJb SINE Alu -12 300 1 1204 199 0 5 chr21 34755976 34756187 -10151383 - MER58A DNA MER1_type 0 224 15 278 319 76 57 chr21 34756187 34756344 -10151226 - MIR3 SINE MIR -48 160 1 496 249 192 5 chr21 34758062 34758255 -10149315 - MIR SINE MIR 0 262 34 1827 106 46 14 chr21 34759135 34759419 -10148151 - AluSq SINE Alu -20 293 1 279 311 227 0 chr21 34760293 34760425 -10147145 - L2 LINE L2 -10 3262 3101 1878 109 18 4 chr21 34760802 34761078 -10146492 + AluSx SINE Alu 12 291 -21 1741 117 81 0 chr21 34761134 34761407 -10146163 - AluSx SINE Alu -17 295 1 213 243 0 0 chr21 34761744 34761781 -10145789 - MIR3 SINE MIR -46 162 126 212 217 165 43 chr21 34761982 34762097 -10145473 + MIR3 SINE MIR 6 134 -74 30 27 0 0 chr21 34762215 34762252 -10145318 + AT_rich Low_complexity Low_complexity 1 37 0 1593 37 0 0 chr21 34762261 34762449 -10145121 + L1PA4 LINE L1 5965 6152 -3 2810 89 11 0 chr21 34763468 34763850 -10143720 + L1PA13 LINE L1 5774 6159 -4 1178 49 0 0 chr21 34763944 34764086 -10143484 - AluSp/q SINE Alu -13 300 159 354 225 50 157 chr21 34764855 34764951 -10142619 + L1ME4a LINE L1 5731 5836 -285 1949 128 10 16 chr21 34764951 34765264 -10142306 + AluSx SINE Alu 1 311 -1 354 225 50 157 chr21 34765264 34765429 -10142141 + L1ME4a LINE L1 5836 5964 -157 2195 101 3 3 chr21 34766751 34767059 -10140511 + AluSp SINE Alu 1 308 -5 581 263 57 104 chr21 34767098 34767480 -10140090 + L1MC4 LINE L1 7512 7911 -131 2162 123 0 0 chr21 34767480 34767790 -10139780 - AluSg SINE Alu 0 310 1 581 263 57 104 chr21 34767790 34767832 -10139738 + L1MC4 LINE L1 7911 7953 -89 243 0 0 0 chr21 34767832 34767859 -10139711 + (TG)n Simple_repeat Simple_repeat 2 28 0 581 263 57 104 chr21 34767859 34767981 -10139589 + L1MC4 LINE L1 7953 8033 -9 1784 110 0 0 chr21 34768231 34768485 -10139085 + AluSc SINE Alu 56 309 0 510 245 52 52 chr21 34768980 34769172 -10138398 - L2 LINE L2 0 3313 3122 235 162 60 6 chr21 34769172 34769339 -10138231 + (TG)n Simple_repeat Simple_repeat 1 176 0 288 150 52 17 chr21 34769367 34769540 -10138030 + (TG)n Simple_repeat Simple_repeat 1 179 0 385 239 22 28 chr21 34769555 34769735 -10137835 + (TG)n Simple_repeat Simple_repeat 1 179 0 446 99 70 23 chr21 34769809 34769980 -10137590 + (TG)n Simple_repeat Simple_repeat 2 180 0 1238 168 14 0 chr21 34769985 34770193 -10137377 + MER2 DNA MER2_type 1 211 -134 231 250 0 0 chr21 34770242 34770282 -10137288 + MER2 DNA MER2_type 306 345 0 999 282 103 24 chr21 34770548 34771013 -10136557 - L2 LINE L2 -459 2855 2354 201 133 0 0 chr21 34771750 34771780 -10135790 + (TG)n Simple_repeat Simple_repeat 1 30 0 1999 96 0 26 chr21 34771803 34772105 -10135465 - AluSg SINE Alu -16 294 1 219 211 0 0 chr21 34772679 34772717 -10134853 + C-rich Low_complexity Low_complexity 3 40 0 534 227 151 52 chr21 34773073 34773324 -10134246 - L2 LINE L2 -1 3312 3037 557 333 82 9 chr21 34773380 34773611 -10133959 - MIR SINE MIR -10 252 5 224 273 36 0 chr21 34776079 34776134 -10131436 + MER5A DNA MER1_type 58 114 -75 301 260 58 10 chr21 34776486 34776590 -10130980 - L1MC5 LINE L1 -36 7925 7817 1027 177 14 64 chr21 34776695 34776915 -10130655 + MER20 DNA MER1_type 1 209 -10 233 249 22 127 chr21 34778685 34778866 -10128704 + L2 LINE L2 3022 3183 -89 189 0 0 0 chr21 34779119 34779140 -10128430 + (TC)n Simple_repeat Simple_repeat 1 21 0 446 304 64 48 chr21 34779598 34779911 -10127659 + L2 LINE L2 2995 3312 -1 1366 199 181 25 chr21 34780680 34781078 -10126492 + MLT1C LTR MaLR 8 467 0 290 25 0 25 chr21 34782516 34782556 -10125014 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 398 176 27 0 chr21 34783681 34783755 -10123815 + LTR47A LTR ERVL 1 76 -376 1324 162 17 8 chr21 34783816 34784057 -10123513 + LTR47B LTR ERVL 201 443 0 637 228 7 35 chr21 34784360 34784505 -10123065 - MIR SINE MIR -66 196 56 196 303 15 0 chr21 34784885 34784951 -10122619 + L2 LINE L2 3206 3272 0 441 84 0 0 chr21 34785649 34785720 -10121850 + (TG)n Simple_repeat Simple_repeat 1 71 0 297 361 58 19 chr21 34786295 34786500 -10121070 + MIR SINE MIR 20 232 -30 5517 178 20 93 chr21 34786636 34788375 -10119195 - L1MB1 LINE L1 -8 6160 4295 395 109 16 0 chr21 34788375 34788439 -10119131 - MER41B LTR ERV1 -90 545 481 5517 178 20 93 chr21 34788439 34789015 -10118555 - L1MB1 LINE L1 -1873 4295 3678 351 0 0 0 chr21 34789015 34789054 -10118516 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2049 85 19 0 chr21 34789058 34789329 -10118241 - AluSq SINE Alu -27 286 11 5517 178 20 93 chr21 34789329 34789456 -10118114 - L1MB1 LINE L1 -2199 3969 3834 232 79 0 0 chr21 34790066 34790104 -10117466 - Alu SINE Alu -6 297 260 420 247 7 72 chr21 34790319 34790458 -10117112 - L1 LINE L1 -2234 3912 3783 873 221 126 41 chr21 34790708 34791002 -10116568 - MER5C DNA MER1_type 0 324 6 23 0 0 0 chr21 34792453 34792476 -10115094 + AT_rich Low_complexity Low_complexity 1 23 0 271 216 153 54 chr21 34792663 34792774 -10114796 + MIR SINE MIR 36 157 -105 1875 185 75 47 chr21 34794460 34794951 -10112619 + MLT1D LTR MaLR 1 505 0 414 228 0 0 chr21 34795389 34795468 -10112102 + MER63A DNA MER1_type 93 171 -39 306 256 0 26 chr21 34796080 34796158 -10111412 + MIR SINE MIR 145 220 -42 413 316 162 22 chr21 34797721 34797999 -10109571 - L2 LINE L2 -5 3267 2951 998 176 0 0 chr21 34798421 34798586 -10108984 + FRAM SINE Alu 1 165 -1 2111 106 0 0 chr21 34798989 34799272 -10108298 + AluSg SINE Alu 12 294 -16 239 309 51 42 chr21 34799334 34799726 -10107844 + L1MC5 LINE L1 7098 7447 -595 4090 113 3 33 chr21 34799726 34800355 -10107215 - MER4B LTR ERV1 0 610 1 239 309 51 42 chr21 34800355 34800404 -10107166 + L1MC5 LINE L1 7447 7494 -548 353 270 42 60 chr21 34800405 34800629 -10106941 + L1ME4a LINE L1 5883 7932 -29 2224 80 0 0 chr21 34800696 34800982 -10106588 - AluSg SINE Alu -24 286 1 493 312 210 0 chr21 34802525 34802730 -10104840 + MIR SINE MIR 15 262 0 2452 60 0 0 chr21 34802862 34803162 -10104408 + AluY SINE Alu 1 300 -11 2192 252 37 7 chr21 34803495 34804177 -10103393 + L1ME3 LINE L1 4222 4923 -1223 1027 254 35 32 chr21 34804188 34804562 -10103008 + L1ME3 LINE L1 5784 6158 -4 803 269 60 20 chr21 34805127 34805376 -10102194 - MIR SINE MIR 0 262 4 209 219 0 0 chr21 34806080 34806121 -10101449 + CT-rich Low_complexity Low_complexity 2 42 0 2061 114 7 3 chr21 34806987 34807294 -10100276 + AluSx SINE Alu 5 312 0 220 226 11 108 chr21 34807639 34807732 -10099838 - L2 LINE L2 0 3272 3189 284 336 19 0 chr21 34807793 34807900 -10099670 + MIR SINE MIR 46 154 -108 685 209 69 112 chr21 34807957 34808436 -10099134 + MLT1H LTR MaLR 9 549 0 214 200 60 0 chr21 34808453 34808503 -10099067 - MIR SINE MIR -1 261 209 23 0 0 0 chr21 34808585 34808608 -10098962 + AT_rich Low_complexity Low_complexity 1 23 0 2283 156 21 8 chr21 34808771 34809150 -10098420 - MLT1B LTR MaLR 0 390 7 1451 178 26 8 chr21 34810084 34810348 -10097222 + L1M3 LINE L1 5446 5714 -469 331 128 0 0 chr21 34810348 34810395 -10097175 + MLT2D LTR ERVL 368 414 0 1517 178 40 7 chr21 34811274 34811572 -10095998 + AluJo SINE Alu 1 308 -4 1343 210 51 36 chr21 34812967 34813301 -10094269 - MLT1C LTR MaLR -118 349 11 247 33 16 66 chr21 34813805 34813866 -10093704 + (CACCC)n Simple_repeat Simple_repeat 4 61 0 2193 115 0 0 chr21 34813987 34814292 -10093278 + AluSx SINE Alu 1 305 -7 1401 167 69 130 chr21 34815133 34815594 -10091976 + MER63B DNA MER1_type 1 433 -3 543 31 0 0 chr21 34815705 34815770 -10091800 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2118 97 19 3 chr21 34815775 34816083 -10091487 - AluSq SINE Alu 0 313 1 262 182 18 18 chr21 34816092 34816147 -10091423 - MER5B DNA MER1_type -123 55 1 203 302 19 0 chr21 34816151 34816204 -10091366 - MIR3 SINE MIR -53 155 102 567 144 10 58 chr21 34816418 34816522 -10091048 - FLAM_A SINE Alu -26 116 18 715 197 0 0 chr21 34816820 34816937 -10090633 + FLAM_A SINE Alu 1 117 -16 2086 85 7 0 chr21 34817969 34818252 -10089318 - AluSp SINE Alu -2 311 27 2212 99 0 3 chr21 34818267 34818571 -10088999 + AluSx SINE Alu 1 303 -9 262 338 69 21 chr21 34818857 34819002 -10088568 + MIR SINE MIR 60 211 -51 555 149 11 0 chr21 34819134 34819228 -10088342 - MER53 DNA DNA 0 189 95 1129 239 203 69 chr21 34819379 34820045 -10087525 + MER20B DNA MER1_type 1 755 -28 354 250 12 0 chr21 34820049 34820133 -10087437 + L1MD2 LINE L1 6061 6145 -214 2031 129 6 3 chr21 34820286 34820597 -10086973 - AluSx SINE Alu 0 312 1 2174 132 9 0 chr21 34820608 34820949 -10086621 - L1PA13 LINE L1 -2 6161 5818 347 207 25 8 chr21 34822156 34822277 -10085293 + CT-rich Low_complexity Low_complexity 1 123 0 255 296 0 23 chr21 34822454 34822542 -10085028 + CT-rich Low_complexity Low_complexity 1 86 0 250 269 15 0 chr21 34822751 34822818 -10084752 + MLT1I LTR MaLR 334 401 -8 2148 168 74 2 chr21 34823353 34823746 -10083824 + MLT2C2 LTR ERVL 3 423 -41 207 0 0 0 chr21 34823760 34823783 -10083787 + (TTCCC)n Simple_repeat Simple_repeat 1 23 0 1658 124 30 124 chr21 34823784 34824165 -10083405 - AluSx SINE Alu 0 351 2 183 220 0 0 chr21 34824356 34824406 -10083164 + GA-rich Low_complexity Low_complexity 2 51 0 2065 81 0 65 chr21 34824810 34825119 -10082451 - AluY SINE Alu -22 289 1 518 246 79 75 chr21 34825561 34825789 -10081781 + MLT1J LTR MaLR 231 459 -52 363 180 101 0 chr21 34826881 34826970 -10080600 + MIR3 SINE MIR 104 201 -7 237 196 0 0 chr21 34827410 34827461 -10080109 + GA-rich Low_complexity Low_complexity 2 52 0 2394 66 0 3 chr21 34827748 34828049 -10079521 - AluY SINE Alu -11 300 1 1103 299 99 40 chr21 34828055 34828268 -10079302 + HAL1 LINE L1 817 1016 -1491 2041 111 3 7 chr21 34828268 34828565 -10079005 - AluSq SINE Alu -17 296 1 1103 299 99 40 chr21 34828565 34829107 -10078463 + HAL1 LINE L1 1016 1640 -867 2827 226 62 2 chr21 34829107 34829723 -10077847 + MER82 DNA MER2_type 1 653 0 1103 299 99 40 chr21 34829723 34829899 -10077671 + HAL1 LINE L1 1640 1804 -703 1762 181 3 0 chr21 34829953 34830251 -10077319 - AluJo SINE Alu -13 299 1 939 237 58 5 chr21 34830287 34830494 -10077076 + MIR SINE MIR 19 236 -26 746 239 18 0 chr21 34831265 34831428 -10076142 - MER58A DNA MER1_type 0 224 59 730 129 44 196 chr21 34831431 34831656 -10075914 + L1PB2 LINE L1 5957 6147 -7 689 184 32 0 chr21 34831864 34831989 -10075581 + FLAM_C SINE Alu 3 131 -12 303 242 61 0 chr21 34832034 34832100 -10075470 - MER58A DNA MER1_type -36 71 2 2048 109 0 0 chr21 34832120 34832404 -10075166 + AluSg SINE Alu 16 299 -11 987 133 12 30 chr21 34833388 34833554 -10074016 - AluJ SINE Alu -18 294 132 225 0 0 0 chr21 34833554 34833579 -10073991 + (TG)n Simple_repeat Simple_repeat 2 26 0 381 235 0 61 chr21 34833607 34833705 -10073865 - L1MC4 LINE L1 -1337 6705 6614 707 156 0 92 chr21 34833736 34833877 -10073693 - AluJ SINE Alu -172 130 3 30 27 0 0 chr21 34833917 34833954 -10073616 + AT_rich Low_complexity Low_complexity 1 37 0 206 350 100 7 chr21 34834323 34834463 -10073107 + MIR SINE MIR 52 204 -58 208 306 74 0 chr21 34835158 34835266 -10072304 + L2 LINE L2 3122 3237 -35 1179 164 45 0 chr21 34837416 34837617 -10069953 + MER20 DNA MER1_type 4 213 -6 794 235 103 117 chr21 34838443 34839017 -10068553 - MLT1L LTR MaLR -8 607 42 614 247 33 0 chr21 34839375 34839525 -10068045 + MIR SINE MIR 108 262 0 1498 231 205 53 chr21 34839533 34840045 -10067525 + MLT1H1 LTR MaLR 1 555 0 210 128 0 0 chr21 34840061 34840100 -10067470 + (TTA)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr21 34840352 34840375 -10067195 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chr21 34842296 34842329 -10065241 + (TTATA)n Simple_repeat Simple_repeat 2 34 0 1681 205 21 50 chr21 34843565 34843676 -10063894 - MLT1A1 LTR MaLR 0 365 252 1690 171 13 26 chr21 34843676 34843981 -10063589 + AluJb SINE Alu 1 301 -11 1681 205 21 50 chr21 34843981 34844105 -10063465 - MLT1A1 LTR MaLR -113 252 143 1861 184 70 16 chr21 34844105 34844479 -10063091 + MSTD LTR MaLR 1 394 -2 1681 205 21 50 chr21 34844479 34844618 -10062952 - MLT1A1 LTR MaLR -222 143 1 3511 207 99 8 chr21 34844618 34845377 -10062193 - MLT1A1-int LTR MaLR 0 1735 908 228 276 0 13 chr21 34845762 34845838 -10061732 + GA-rich Low_complexity Low_complexity 3 77 0 235 272 116 27 chr21 34845928 34846075 -10061495 - MIR SINE MIR -97 165 6 43628 48 6 3 chr21 34846387 34852516 -10055054 + L1PA5 LINE L1 11 6154 0 1731 151 0 46 chr21 34852904 34853229 -10054341 - AluJo SINE Alu 0 312 3 654 252 120 52 chr21 34854126 34854451 -10053119 - MLT1I LTR MaLR 0 409 63 396 248 18 18 chr21 34854534 34854643 -10052927 - MIR SINE MIR -77 131 23 2513 120 77 10 chr21 34854681 34855082 -10052488 + MSTA LTR MaLR 1 428 0 247 218 9 118 chr21 34855110 34855154 -10052416 + MER103 DNA DNA 57 104 -62 2042 130 7 0 chr21 34855154 34855454 -10052116 + AluSq SINE Alu 1 302 -11 247 218 9 118 chr21 34855454 34855519 -10052051 + MER103 DNA DNA 104 154 -12 451 283 152 11 chr21 34856689 34856873 -10050697 - L3 LINE CR1 -176 1401 1192 2017 157 34 0 chr21 34857369 34857694 -10049876 - MER7A DNA MER2_type -12 334 1 189 0 0 0 chr21 34857720 34857741 -10049829 + (CA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr21 34857874 34857899 -10049671 + AT_rich Low_complexity Low_complexity 1 25 0 2464 68 3 7 chr21 34859511 34859821 -10047749 + AluY SINE Alu 1 309 -2 1728 178 50 3 chr21 34859906 34860204 -10047366 + AluJo SINE Alu 1 312 0 277 326 31 0 chr21 34860542 34860671 -10046899 + MIR3 SINE MIR 55 187 -21 1792 182 10 0 chr21 34861625 34861922 -10045648 - AluJb SINE Alu -12 300 1 229 349 83 0 chr21 34863208 34863340 -10044230 + MIR SINE MIR 65 207 -55 296 214 119 32 chr21 34863606 34863732 -10043838 - MER90 LTR ERV1 -12 563 427 1607 150 14 145 chr21 34863908 34863978 -10043592 - MLT1A1 LTR MaLR -6 359 281 1987 133 0 0 chr21 34863978 34864248 -10043322 + AluSx SINE Alu 43 312 0 1607 150 14 145 chr21 34864248 34864590 -10042980 - MLT1A1 LTR MaLR -84 281 1 307 292 26 26 chr21 34864812 34864925 -10042645 - HAL1b LINE L1 -437 911 799 1991 139 13 7 chr21 34864927 34865236 -10042334 - AluY SINE Alu 0 311 1 1235 158 33 14 chr21 34865277 34865492 -10042078 + MER20 DNA MER1_type 1 219 0 980 260 16 39 chr21 34866216 34866474 -10041096 + MIR SINE MIR 10 261 -1 1478 256 52 50 chr21 34866479 34867207 -10040363 - HAL1 LINE L1 -785 1722 993 2433 81 0 10 chr21 34868329 34868638 -10038932 - AluSx SINE Alu -6 306 1 1271 238 101 26 chr21 34868990 34869418 -10038152 - MLT1C LTR MaLR -1 466 7 1132 174 28 28 chr21 34870790 34871008 -10036562 - MER20 DNA MER1_type 0 219 2 201 323 0 52 chr21 34871105 34871201 -10036369 + L2 LINE L2 3024 3114 -199 1816 172 3 19 chr21 34871258 34871566 -10036004 + AluJo SINE Alu 1 303 -9 461 251 139 43 chr21 34872279 34872602 -10034968 - MLT1J LTR MaLR -53 458 105 476 196 147 0 chr21 34873060 34873162 -10034408 - FLAM_A SINE Alu -16 126 10 1921 153 3 32 chr21 34873198 34873512 -10034058 - AluJb SINE Alu -7 305 1 27 0 0 0 chr21 34873671 34873698 -10033872 + AT_rich Low_complexity Low_complexity 1 27 0 2411 135 0 0 chr21 34874113 34874483 -10033087 - L1PB1 LINE L1 0 6151 5782 284 164 33 0 chr21 34874485 34874546 -10033024 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 2050 73 0 0 chr21 34874546 34874820 -10032750 - L1PB1 LINE L1 -359 5792 5519 1850 170 28 48 chr21 34874863 34875179 -10032391 + MLT2D LTR ERVL 1 322 -198 2134 121 0 0 chr21 34875179 34875460 -10032110 + AluSq SINE Alu 1 281 -32 207 0 0 0 chr21 34875460 34875483 -10032087 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1850 170 28 48 chr21 34875483 34875549 -10032021 + MLT2D LTR ERVL 320 480 -40 297 0 0 0 chr21 34875580 34875614 -10031956 + (GA)n Simple_repeat Simple_repeat 1 67 0 297 0 0 0 chr21 34875614 34875647 -10031923 + (GA)n Simple_repeat Simple_repeat 2 34 0 324 115 19 0 chr21 34875666 34875718 -10031852 + MLT2D LTR ERVL 466 518 -2 186 43 0 0 chr21 34876400 34876423 -10031147 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 299 250 152 11 chr21 34876735 34876827 -10030743 - L2 LINE L2 0 3272 3168 2242 120 0 13 chr21 34878020 34878329 -10029241 + AluSx SINE Alu 2 306 -6 246 125 0 0 chr21 34878341 34878381 -10029189 + L1P5 LINE L1 5782 5821 -330 2191 126 0 13 chr21 34878381 34878691 -10028879 + AluSx SINE Alu 1 306 -6 1954 179 62 0 chr21 34878708 34879076 -10028494 + L1MB5 LINE L1 5776 6166 -8 748 23 0 0 chr21 34879145 34879231 -10028339 - AluY SINE Alu -12 299 214 22 0 0 0 chr21 34879283 34879305 -10028265 + AT_rich Low_complexity Low_complexity 1 22 0 1657 100 0 0 chr21 34879987 34880197 -10027373 - AluSg/x SINE Alu -11 301 92 1029 187 77 99 chr21 34880203 34880338 -10027232 + MLT1A1 LTR MaLR 11 147 -218 1860 153 52 0 chr21 34880338 34880625 -10026945 + AluSx SINE Alu 1 302 -10 1029 187 77 99 chr21 34880625 34880852 -10026718 + MLT1A1 LTR MaLR 147 365 0 804 146 0 0 chr21 34880906 34881070 -10026500 + (TCCA)n Simple_repeat Simple_repeat 3 166 0 687 300 38 25 chr21 34881103 34881343 -10026227 + MIR SINE MIR 20 262 0 313 323 36 42 chr21 34881389 34881581 -10025989 - MLT1K LTR MaLR -230 358 168 413 87 0 14 chr21 34881588 34881657 -10025913 - MSTB2 LTR MaLR -313 144 77 444 37 0 0 chr21 34881664 34881718 -10025852 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 276 30 0 0 chr21 34881712 34881745 -10025825 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 1755 170 51 3 chr21 34881745 34882039 -10025531 - AluJb SINE Alu -4 308 1 395 93 0 0 chr21 34882042 34882096 -10025474 - MSTB2 LTR MaLR -378 54 1 320 313 153 37 chr21 34883601 34883981 -10023589 + L2 LINE L2 2890 3313 0 22 0 0 0 chr21 34884585 34884607 -10022963 + AT_rich Low_complexity Low_complexity 1 22 0 1043 208 77 9 chr21 34885589 34885810 -10021760 + AluJo SINE Alu 1 236 -76 630 299 32 0 chr21 34886245 34886432 -10021138 + MIR SINE MIR 57 249 -13 5818 100 7 15 chr21 34886501 34886712 -10020858 + L1PA13 LINE L1 5279 5490 -673 2357 98 10 0 chr21 34886712 34887017 -10020553 + AluSg SINE Alu 1 308 -2 5818 100 7 15 chr21 34887017 34887692 -10019878 + L1PA13 LINE L1 5490 6158 -5 1958 100 4 33 chr21 34887692 34887963 -10019607 + AluSg SINE Alu 17 279 -31 387 142 8 24 chr21 34887963 34888090 -10019480 + (TTTA)n Simple_repeat Simple_repeat 3 127 0 251 217 8 93 chr21 34888891 34889020 -10018550 + LTR16A1 LTR ERVL 340 457 0 2241 95 0 36 chr21 34889127 34889293 -10018277 - AluSg1 SINE Alu -15 294 124 405 0 0 0 chr21 34889293 34889338 -10018232 + (TG)n Simple_repeat Simple_repeat 2 46 0 2259 86 0 0 chr21 34889341 34889620 -10017950 - AluY SINE Alu -32 279 1 2241 95 0 36 chr21 34889620 34889754 -10017816 - AluSg1 SINE Alu -187 122 1 2202 112 6 13 chr21 34890679 34891124 -10016446 + AluSg SINE Alu 1 443 0 1695 81 0 5 chr21 34891134 34891343 -10016227 + AluY SINE Alu 34 241 -70 288 130 0 0 chr21 34891346 34891392 -10016178 + (A)n Simple_repeat Simple_repeat 1 46 0 2422 76 0 41 chr21 34892177 34892494 -10015076 + AluSx SINE Alu 9 312 0 1103 97 0 38 chr21 34892496 34892682 -10014888 + (TA)n Simple_repeat Simple_repeat 2 180 0 1970 152 3 10 chr21 34892686 34892989 -10014581 + AluJo SINE Alu 1 301 -11 272 301 136 19 chr21 34893976 34894285 -10013285 - L2 LINE L2 -97 3175 2831 387 0 0 0 chr21 34894352 34894395 -10013175 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr21 34894488 34894523 -10013047 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr21 34894941 34894964 -10012606 + (TC)n Simple_repeat Simple_repeat 2 24 0 2257 103 7 0 chr21 34894964 34895256 -10012314 - AluSg SINE Alu -16 294 1 561 268 44 124 chr21 34895257 34895544 -10012026 + HAL1 LINE L1 30 338 -2169 216 0 0 0 chr21 34895544 34895568 -10012002 + (TA)n Simple_repeat Simple_repeat 2 25 0 1896 154 0 33 chr21 34895568 34895873 -10011697 - AluJb SINE Alu -17 295 1 561 268 44 124 chr21 34895873 34896147 -10011423 + HAL1 LINE L1 336 547 -1960 2219 125 0 0 chr21 34897927 34898224 -10009346 + AluSx SINE Alu 1 297 -15 763 216 216 45 chr21 34899323 34899725 -10007845 - MLT1D LTR MaLR -34 471 1 2301 123 0 0 chr21 34900576 34900877 -10006693 - AluSx SINE Alu -1 311 11 297 250 70 30 chr21 34901034 34901134 -10006436 - MIR SINE MIR -6 256 153 607 286 62 55 chr21 34901735 34902248 -10005322 + L1MEd LINE L1 895 1411 -5005 764 191 62 48 chr21 34902252 34902297 -10005273 + MER58A DNA MER1_type 3 46 -2374 2830 82 77 12 chr21 34902297 34902676 -10004894 + MLT2A1 LTR ERVL 1 411 -33 291 54 0 0 chr21 34902676 34902713 -10004857 + (CA)n Simple_repeat Simple_repeat 2 38 0 2830 82 77 12 chr21 34902713 34902750 -10004820 + MLT2A1 LTR ERVL 411 444 0 764 191 62 48 chr21 34902750 34902913 -10004657 + MER58A DNA MER1_type 46 214 -10 1877 159 7 26 chr21 34902913 34903215 -10004355 + AluJb SINE Alu 1 296 -16 402 262 29 0 chr21 34903242 34903396 -10004174 + L1MEd LINE L1 1256 1464 -4964 1321 214 114 52 chr21 34903397 34903837 -10003733 + MLT1C LTR MaLR 1 467 0 556 265 66 52 chr21 34903851 34903983 -10003587 + MLT1H1 LTR MaLR 1 130 -460 2622 108 8 16 chr21 34903983 34904361 -10003209 - THE1C LTR MaLR 0 375 1 556 265 66 52 chr21 34904361 34904563 -10003007 + MLT1H1 LTR MaLR 130 336 -254 270 215 188 34 chr21 34904701 34904850 -10002720 + MLT1H1 LTR MaLR 312 483 -72 2009 137 0 38 chr21 34904968 34905282 -10002288 - AluJb SINE Alu -8 304 3 2171 113 10 0 chr21 34905434 34905726 -10001844 - AluSq SINE Alu -18 295 1 1669 251 112 75 chr21 34906321 34906559 -10001011 + HAL1 LINE L1 475 703 -1804 189 0 0 0 chr21 34906559 34906580 -10000990 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1669 251 112 75 chr21 34906580 34907613 -9999957 + HAL1 LINE L1 703 1793 -714 228 152 106 45 chr21 34907627 34907693 -9999877 + L1MC4 LINE L1 7240 7309 -733 1942 139 42 3 chr21 34907693 34907980 -9999590 - AluSx SINE Alu -14 298 1 192 77 0 0 chr21 34908022 34908048 -9999522 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1125 256 222 22 chr21 34908051 34908673 -9998897 + L1MC4 LINE L1 7291 8036 -6 2253 107 0 10 chr21 34908754 34909054 -9998516 + AluSq SINE Alu 2 298 -15 377 267 48 0 chr21 34909132 34909237 -9998333 + MIR SINE MIR 95 204 -58 1752 185 3 0 chr21 34909287 34909674 -9997896 + AluJb SINE Alu 1 293 -19 1128 228 138 12 chr21 34910568 34910968 -9996602 + MLT1C LTR MaLR 18 467 0 353 276 49 24 chr21 34911126 34911390 -9996180 + L1MEd LINE L1 1248 1621 -4862 655 204 15 88 chr21 34911393 34911470 -9996100 - L1MA9 LINE L1 -1 6311 6230 1850 119 47 73 chr21 34911470 34911855 -9995715 + THE1C LTR MaLR 1 375 0 655 204 15 88 chr21 34911855 34911915 -9995655 - L1MA9 LINE L1 -82 6230 6167 228 35 0 0 chr21 34911915 34911944 -9995626 + (TG)n Simple_repeat Simple_repeat 1 29 0 655 204 15 88 chr21 34911944 34911971 -9995599 - L1MA9 LINE L1 -145 6167 6140 1046 116 0 0 chr21 34911971 34912126 -9995444 + L1PB4 LINE L1 6000 6154 -2 655 204 15 88 chr21 34912126 34912219 -9995351 - L1MA9 LINE L1 -172 6140 6071 312 207 0 73 chr21 34912223 34912305 -9995265 + L1MCa LINE L1 1470 1545 -4881 801 197 36 10 chr21 34912394 34912587 -9994983 + L1M4 LINE L1 4017 4214 -1932 1902 256 19 39 chr21 34912590 34913105 -9994465 + MER45C DNA AcHobo 449 953 0 2302 118 3 0 chr21 34913528 34913832 -9993738 + AluSx SINE Alu 1 305 -7 920 263 81 36 chr21 34913846 34914265 -9993305 - L1MC5 LINE L1 -278 7683 7246 273 250 0 0 chr21 34914291 34914347 -9993223 + CT-rich Low_complexity Low_complexity 3 58 0 258 268 13 89 chr21 34914347 34914504 -9993066 - L1MC5 LINE L1 -731 7230 7086 225 174 22 0 chr21 34914508 34914554 -9993016 - Tigger8 DNA MER2_type -155 511 465 491 188 29 72 chr21 34915560 34915698 -9991872 - L1ME3 LINE L1 0 6162 6031 2199 135 3 3 chr21 34915939 34916251 -9991319 - AluSx SINE Alu 0 312 1 2175 172 11 33 chr21 34916424 34916883 -9990687 + L1MB8 LINE L1 5702 6150 -28 542 123 0 0 chr21 34916884 34916965 -9990605 + MSTC LTR MaLR 1 81 -347 1881 176 7 3 chr21 34916966 34917268 -9990302 + AluJb SINE Alu 1 303 -9 1905 127 6 62 chr21 34917268 34917591 -9989979 + AluSq SINE Alu 1 305 -8 444 243 82 20 chr21 34917595 34917786 -9989784 + MLT1D LTR MaLR 186 396 -71 552 161 0 0 chr21 34917797 34917904 -9989666 + AluSg/x SINE Alu 196 302 0 269 149 21 0 chr21 34917904 34917951 -9989619 + MSTB2 LTR MaLR 409 456 -1 242 343 14 0 chr21 34918592 34918665 -9988905 - LTR67 LTR ERVL -370 187 114 23 0 0 0 chr21 34918855 34918878 -9988692 + AT_rich Low_complexity Low_complexity 1 23 0 242 224 40 132 chr21 34918891 34919065 -9988505 - MIR SINE MIR 0 262 105 1984 130 6 44 chr21 34920011 34920327 -9987243 + AluSx SINE Alu 1 304 -8 222 191 0 0 chr21 34926621 34926668 -9980902 + (TG)n Simple_repeat Simple_repeat 2 48 0 226 184 41 0 chr21 34928869 34928918 -9978652 + C-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr21 34929374 34929395 -9978175 + GC_rich Low_complexity Low_complexity 1 21 0 439 138 0 32 chr21 34930124 34930218 -9977352 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 220 176 0 0 chr21 34930220 34930254 -9977316 + polypyrimidine Low_complexity Low_complexity 4 37 0 * 427 267 0 63 chr21 34930229 34930420 -9977150 + CT-rich Low_complexity Low_complexity 1 179 0 229 228 76 0 chr21 34933176 34933240 -9974330 + MIR SINE MIR 114 183 -79 196 177 129 16 chr21 34935631 34935693 -9971877 - MIR SINE MIR -64 198 130 201 39 0 0 chr21 34937787 34937813 -9969757 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 1973 101 59 11 chr21 34939645 34939956 -9967614 - AluSx SINE Alu 0 312 1 531 241 58 0 chr21 34939958 34940095 -9967475 - MIR SINE MIR -103 159 15 23 0 0 0 chr21 34940436 34940459 -9967111 + AT_rich Low_complexity Low_complexity 1 23 0 536 77 13 0 chr21 34943884 34943962 -9963608 + MADE1 DNA Mariner 1 79 -1 2048 102 4 0 chr21 34947283 34947558 -9960012 - AluSx SINE Alu -2 310 35 1388 233 52 32 chr21 34950106 34950549 -9957021 + Charlie4a DNA MER1_type 7 458 -50 2154 105 23 13 chr21 34951277 34951581 -9955989 - AluSq SINE Alu -6 307 1 1813 166 3 10 chr21 34954132 34954422 -9953148 - AluJo SINE Alu -22 290 3 310 318 20 47 chr21 34954424 34954572 -9952998 + MIR3 SINE MIR 44 187 -21 1899 161 10 14 chr21 34954909 34955200 -9952370 + AluJb SINE Alu 1 290 -22 1761 171 24 3 chr21 34955474 34955766 -9951804 - AluJb SINE Alu -14 298 1 312 232 80 54 chr21 34956340 34956452 -9951118 - L1MC4 LINE L1 -932 7110 6996 22 0 0 0 chr21 34956872 34956894 -9950676 + AT_rich Low_complexity Low_complexity 1 22 0 2256 94 14 0 chr21 34956894 34957180 -9950390 - AluSq SINE Alu -23 290 1 278 237 0 0 chr21 34957243 34957302 -9950268 - L1MA7 LINE L1 -33 6258 6200 294 73 0 36 chr21 34957633 34957688 -9949882 - L1MB3 LINE L1 -2 6181 6129 1741 216 37 11 chr21 34960048 34960502 -9947068 + L1MB4 LINE L1 5715 6180 0 556 249 99 40 chr21 34961325 34961526 -9946044 - MIR SINE MIR -15 247 35 2352 98 0 0 chr21 34961741 34962028 -9945542 - AluSx SINE Alu -25 287 1 1729 124 0 0 chr21 34963076 34963309 -9944261 - AluSx SINE Alu -18 294 62 2474 63 0 7 chr21 34963406 34963706 -9943864 - AluY SINE Alu -13 298 1 189 0 0 0 chr21 34963972 34963993 -9943577 + (CACAC)n Simple_repeat Simple_repeat 3 23 0 262 232 116 0 chr21 34964772 34964884 -9942686 - LTR16C LTR ERVL -17 474 350 1928 185 0 6 chr21 34966590 34967074 -9940496 - AluJo SINE Alu 0 482 1 2167 82 0 14 chr21 34967557 34967839 -9939731 + AluSx SINE Alu 35 312 0 2205 93 3 7 chr21 34968070 34968361 -9939209 + AluSg SINE Alu 1 290 -20 254 128 0 0 chr21 34968361 34968400 -9939170 - MADE1 DNA Mariner -41 39 1 625 267 57 0 chr21 34969002 34969178 -9938392 - MIR SINE MIR -1 261 76 542 256 73 54 chr21 34969212 34969525 -9938045 - L1ME4a LINE L1 -196 5925 5607 831 124 32 63 chr21 34969584 34969911 -9937659 + AluSx SINE Alu 2 380 0 872 179 120 22 chr21 34969972 34970210 -9937360 - L1MB7 LINE L1 -41 6143 5887 192 97 0 0 chr21 34971828 34971859 -9935711 + (T)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr21 34972246 34972276 -9935294 + AT_rich Low_complexity Low_complexity 1 30 0 973 87 0 16 chr21 34972277 34972403 -9935167 - FLAM_C SINE Alu -19 124 1 1946 107 65 0 chr21 34973812 34974075 -9933495 + AluSx SINE Alu 1 280 -32 707 165 23 17 chr21 34974159 34974335 -9933235 + GA-rich Low_complexity Low_complexity 2 178 0 269 229 114 0 chr21 34975462 34975532 -9932038 + MIR SINE MIR 68 145 -117 2256 112 10 0 chr21 34975879 34976182 -9931388 + AluSx SINE Alu 1 306 -6 505 235 105 8 chr21 34977078 34977333 -9930237 + MER33 DNA MER1_type 1 278 -46 33 97 0 0 chr21 34977611 34977714 -9929856 + GC_rich Low_complexity Low_complexity 1 103 0 35 107 0 0 chr21 34977751 34977891 -9929679 + GC_rich Low_complexity Low_complexity 1 140 0 180 200 0 0 chr21 34982996 34983036 -9924534 + (CA)n Simple_repeat Simple_repeat 1 40 0 223 221 29 0 chr21 34983920 34983988 -9923582 + A-rich Low_complexity Low_complexity 4 73 0 596 239 117 103 chr21 34984782 34984960 -9922610 - L1MC4 LINE L1 0 8042 7868 1835 155 23 26 chr21 34984960 34985270 -9922300 + AluJo SINE Alu 1 309 -3 596 239 117 103 chr21 34985270 34985597 -9921973 - L1MC4 LINE L1 -174 7868 7530 462 172 297 0 chr21 34985602 34985747 -9921823 - MER5A DNA MER1_type -1 188 1 430 249 121 23 chr21 34985764 34985937 -9921633 - L1MC4 LINE L1 -519 7523 7334 2605 47 0 40 chr21 34986002 34986324 -9921246 + AluY SINE Alu 1 309 -2 202 241 48 84 chr21 34987651 34987734 -9919836 - L2 LINE L2 0 3313 3234 1928 163 0 10 chr21 34987941 34988254 -9919316 - AluJo SINE Alu -2 310 1 1038 176 0 0 chr21 34988256 34988421 -9919149 - FRAM SINE Alu -11 165 1 229 279 72 72 chr21 34988521 34988547 -9919023 - MIR SINE MIR -63 145 120 2092 125 3 10 chr21 34988547 34988851 -9918719 + AluSg SINE Alu 1 302 -8 229 279 72 72 chr21 34988851 34988935 -9918635 - MIR SINE MIR -87 121 35 2376 97 0 3 chr21 34990174 34990474 -9917096 + AluSg SINE Alu 1 299 -11 415 377 11 0 chr21 34990921 34991096 -9916474 - MIR SINE MIR -35 227 51 551 245 61 0 chr21 34991391 34991554 -9916016 + MER20 DNA MER1_type 42 214 -5 2062 112 49 0 chr21 34992870 34993155 -9914415 - AluSg SINE Alu -11 299 1 2304 103 0 0 chr21 34993962 34994252 -9913318 + AluSc SINE Alu 1 290 -19 1875 171 0 9 chr21 34994267 34994582 -9912988 + AluJb SINE Alu 1 312 0 313 164 146 109 chr21 34995420 34995484 -9912086 + L1MB8 LINE L1 6065 6136 -42 2218 123 3 3 chr21 34995484 34995792 -9911778 - AluSx SINE Alu -4 308 1 313 164 146 109 chr21 34995792 34995837 -9911733 + L1MB8 LINE L1 6136 6178 0 1748 156 62 3 chr21 34995880 34996168 -9911402 - AluJo SINE Alu -7 305 1 375 277 119 21 chr21 34999787 34999987 -9907583 + L1ME4a LINE L1 5698 5936 -185 2336 115 0 3 chr21 34999987 35000292 -9907278 - AluSx SINE Alu -8 304 1 375 277 119 21 chr21 35000292 35000376 -9907194 + L1ME4a LINE L1 5936 6010 -111 1006 178 82 34 chr21 35000425 35000633 -9906937 - AluJb SINE Alu -10 302 85 2429 73 0 3 chr21 35000783 35001122 -9906448 + AluY SINE Alu 1 311 0 259 312 19 39 chr21 35001231 35001385 -9906185 + L1ME4a LINE L1 5595 5745 -376 2259 87 17 7 chr21 35001562 35001860 -9905710 + AluSq SINE Alu 1 301 -12 335 241 181 42 chr21 35002023 35002200 -9905370 + L1ME4a LINE L1 5780 5994 -127 2060 143 0 7 chr21 35002200 35002508 -9905062 + AluJb SINE Alu 1 306 -6 335 241 181 42 chr21 35002508 35002546 -9905024 + L1ME4a LINE L1 5994 6025 -96 2305 92 7 0 chr21 35002548 35002842 -9904728 + AluSc SINE Alu 1 296 -13 229 237 52 10 chr21 35002905 35003002 -9904568 + L1ME4a LINE L1 6009 6109 -12 232 248 154 60 chr21 35004155 35004272 -9903298 + MIR SINE MIR 16 143 -65 972 224 32 52 chr21 35005970 35006255 -9901315 - L1MC4 LINE L1 -1 8041 7761 2405 106 0 0 chr21 35006255 35006558 -9901012 - AluSg SINE Alu -7 303 1 972 224 32 52 chr21 35006558 35006580 -9900990 - L1MC4 LINE L1 -281 7761 7740 955 236 115 35 chr21 35006580 35006771 -9900799 - MER58B DNA MER1_type -2079 341 114 1897 179 42 25 chr21 35006771 35007178 -9900392 - L1MC2 LINE L1 -9 6335 5922 955 236 115 35 chr21 35007178 35007300 -9900270 - MER58B DNA MER1_type -2306 114 3 2989 200 82 50 chr21 35007302 35007804 -9899766 - L1MC4 LINE L1 -295 7747 7262 2524 71 0 3 chr21 35007804 35008114 -9899456 - AluY SINE Alu -2 309 1 2989 200 82 50 chr21 35008114 35008125 -9899445 - L1MC4 LINE L1 -780 7262 7253 2147 130 3 0 chr21 35008125 35008424 -9899146 - AluSx SINE Alu -12 300 1 2989 200 82 50 chr21 35008424 35008862 -9898708 - L1MC4 LINE L1 -789 7253 6765 770 197 182 5 chr21 35008912 35009115 -9898455 + MER8 DNA MER2_type 1 239 0 368 118 15 0 chr21 35009118 35009186 -9898384 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 1003 249 76 95 chr21 35009204 35009979 -9897591 - L1MC4 LINE L1 -1211 6597 5809 694 76 0 0 chr21 35009979 35010071 -9897499 + Charlie3 DNA MER1_type 231 322 -2388 1003 249 76 95 chr21 35010071 35010083 -9897487 - L1MC4 LINE L1 -1999 5809 5798 2126 86 86 0 chr21 35010083 35010363 -9897207 - AluY SINE Alu -7 304 1 1003 249 76 95 chr21 35010363 35010652 -9896918 - L1MC4 LINE L1 -2010 5798 5496 1487 109 25 67 chr21 35010791 35011029 -9896541 + Charlie3 DNA MER1_type 57 284 -2426 679 85 0 21 chr21 35011029 35011123 -9896447 + AluSp/q SINE Alu 210 301 -12 1230 291 109 20 chr21 35011130 35012049 -9895521 - L1MC4 LINE L1 -1538 4608 3608 1909 138 22 47 chr21 35012532 35012852 -9894718 + AluSx SINE Alu 1 312 0 348 164 0 0 chr21 35013643 35013710 -9893860 + (CA)n Simple_repeat Simple_repeat 1 67 0 2132 128 3 7 chr21 35014157 35014461 -9893109 - AluSx SINE Alu -9 303 1 422 287 55 52 chr21 35015374 35015663 -9891907 - L1 LINE L1 -1839 4307 4018 1442 153 0 9 chr21 35018888 35019117 -9888453 - AluJo SINE Alu -2 310 84 21 0 0 0 chr21 35019458 35019479 -9888091 + AT_rich Low_complexity Low_complexity 1 21 0 675 270 27 47 chr21 35019678 35019956 -9887614 - L1M2 LINE L1 -423 5698 5479 2138 118 0 0 chr21 35019969 35020278 -9887292 + AluSc SINE Alu 1 309 0 316 234 13 0 chr21 35022204 35022281 -9885289 + MER116 DNA Mariner 3 80 0 207 194 0 42 chr21 35022294 35022366 -9885204 + G-rich Low_complexity Low_complexity 1 69 0 257 250 53 0 chr21 35022461 35022537 -9885033 - MIR SINE MIR -115 147 68 2299 95 0 20 chr21 35023141 35023445 -9884125 - AluSg SINE Alu -12 298 1 181 111 0 0 chr21 35023695 35023722 -9883848 + MIR SINE MIR 87 113 -149 730 294 190 25 chr21 35023999 35024969 -9882601 - L2 LINE L2 -34 3279 2146 295 309 114 47 chr21 35025549 35025698 -9881872 + L2 LINE L2 3112 3270 -2 667 315 49 15 chr21 35025910 35026234 -9881336 + L1M4 LINE L1 3595 3929 -2217 2230 121 0 0 chr21 35026714 35027012 -9880558 - AluSx SINE Alu -14 298 1 61 27 0 0 chr21 35027205 35027280 -9880290 + AT_rich Low_complexity Low_complexity 1 75 0 439 286 239 22 chr21 35027687 35028043 -9879527 - L2 LINE L2 -20 3293 2861 2384 215 35 35 chr21 35028130 35029259 -9878311 - L1ME1 LINE L1 -288 5878 4755 215 350 75 0 chr21 35029331 35029491 -9878079 - L2 LINE L2 -1009 2305 2134 183 233 50 58 chr21 35029688 35029808 -9877762 + MIR SINE MIR 97 215 -47 182 262 0 0 chr21 35030145 35030187 -9877383 + L2 LINE L2 3267 3308 -5 293 241 32 114 chr21 35030362 35030520 -9877050 - MIR SINE MIR -90 172 28 804 155 0 40 chr21 35031630 35031778 -9875792 - FLAM_C SINE Alu 0 143 2 300 253 0 25 chr21 35032001 35032080 -9875490 - MLT1J2 LTR MaLR -121 329 253 281 242 219 8 chr21 35032089 35032239 -9875331 - MLT1J2 LTR MaLR -243 203 27 264 267 122 0 chr21 35032378 35032468 -9875102 - MIR SINE MIR -102 160 60 185 0 40 0 chr21 35033568 35033593 -9873977 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 776 277 87 61 chr21 35036573 35037100 -9870470 - MLT1F LTR MaLR -1 541 1 196 283 20 40 chr21 35037466 35037565 -9870005 - MIR SINE MIR 0 262 166 594 258 112 21 chr21 35037864 35038194 -9869376 - L1ME4a LINE L1 -21 6100 5741 1334 256 96 54 chr21 35038208 35038777 -9868793 - L1MEc LINE L1 -4064 2016 1473 2040 146 0 0 chr21 35038777 35039072 -9868498 + AluSx SINE Alu 1 295 -17 1334 256 96 54 chr21 35039072 35039583 -9867987 - L1MEc LINE L1 -4607 1473 985 1860 167 0 13 chr21 35039583 35039888 -9867682 - AluJo SINE Alu -11 301 1 1334 256 96 54 chr21 35039888 35040301 -9867269 - L1MEc LINE L1 -5095 985 328 387 209 7 157 chr21 35040396 35040549 -9867021 - L1MEc LINE L1 -5937 133 4 874 188 84 91 chr21 35040550 35040848 -9866722 + L1MC4 LINE L1 6772 7067 -975 541 208 32 0 chr21 35040880 35041005 -9866565 - L1MA8 LINE L1 -7 6284 6156 323 315 15 0 chr21 35041722 35041852 -9865718 + MIR3 SINE MIR 70 201 -7 1990 162 0 0 chr21 35042626 35042923 -9864647 + AluJo SINE Alu 6 302 -10 1034 161 33 0 chr21 35044188 35044368 -9863202 + MER53 DNA DNA 1 186 -3 362 222 174 49 chr21 35044532 35044676 -9862894 - MER5A DNA MER1_type -2 187 26 2214 113 7 7 chr21 35044872 35045173 -9862397 - AluSx SINE Alu -11 301 1 277 279 171 0 chr21 35045905 35046034 -9861536 + MIR SINE MIR 5 155 -107 1379 139 0 14 chr21 35046046 35046254 -9861316 + AluJb SINE Alu 92 296 -16 364 293 126 18 chr21 35049427 35049649 -9857921 - MIR SINE MIR -12 250 5 2070 171 99 53 chr21 35050068 35050677 -9856893 + MER52A LTR ERV1 42 757 -998 180 143 54 18 chr21 35051718 35051774 -9855796 + GA-rich Low_complexity Low_complexity 4 61 0 2127 111 0 33 chr21 35051984 35052290 -9855280 + AluSg SINE Alu 1 296 -14 292 243 135 0 chr21 35052929 35053003 -9854567 - HsTC2 DNA Tc2 -1811 87 4 342 0 0 0 chr21 35053455 35053493 -9854077 + (TG)n Simple_repeat Simple_repeat 2 39 0 1003 53 0 0 chr21 35053842 35053956 -9853614 + AluSq/x SINE Alu 1 114 -198 3226 114 22 10 chr21 35053956 35054454 -9853116 + L1PA8 LINE L1 5669 6172 0 1386 219 25 21 chr21 35054951 35055234 -9852336 + AluJo SINE Alu 1 284 -28 22 35 0 0 chr21 35055234 35055263 -9852307 + AT_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr21 35055303 35055329 -9852241 + (TG)n Simple_repeat Simple_repeat 2 27 0 220 273 41 2 chr21 35056572 35056680 -9850890 - MIR SINE MIR -95 167 32 2462 72 3 22 chr21 35057131 35057450 -9850120 + AluSq SINE Alu 1 313 0 2470 94 0 0 chr21 35057648 35057957 -9849613 - AluY SINE Alu -2 309 1 22 0 0 0 chr21 35058133 35058155 -9849415 + AT_rich Low_complexity Low_complexity 1 22 0 399 41 0 0 chr21 35058211 35058260 -9849310 + (TGAA)n Simple_repeat Simple_repeat 2 50 0 1963 168 7 63 chr21 35059762 35060174 -9847396 + MLT1B LTR MaLR 2 390 0 1717 143 68 27 chr21 35060396 35060690 -9846880 + AluJb SINE Alu 1 306 -6 2167 112 3 10 chr21 35061243 35061539 -9846031 + AluSx SINE Alu 1 294 -18 26 0 0 0 chr21 35061648 35061674 -9845896 + AT_rich Low_complexity Low_complexity 1 26 0 639 235 74 0 chr21 35062354 35062516 -9845054 - MIR SINE MIR -26 236 63 1423 164 46 30 chr21 35062884 35063147 -9844423 - AluJb SINE Alu -19 293 27 2072 124 7 7 chr21 35063147 35063437 -9844133 + AluSx SINE Alu 1 290 -22 189 0 0 0 chr21 35063438 35063459 -9844111 + (TA)n Simple_repeat Simple_repeat 2 22 0 1328 203 0 8 chr21 35063783 35064024 -9843546 - MER8 DNA MER2_type 0 239 1 2416 76 0 0 chr21 35064409 35064698 -9842872 - AluSc SINE Alu -20 289 1 1944 14 18 0 chr21 35066160 35066383 -9841187 - L1PA3 LINE L1 0 6155 5929 1960 32 0 0 chr21 35066383 35066637 -9840933 + L1M LINE L1 5167 5420 -743 2372 92 7 0 chr21 35066747 35067053 -9840517 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr21 35067460 35067489 -9840081 + AT_rich Low_complexity Low_complexity 1 29 0 259 265 88 0 chr21 35068125 35068143 -9839427 + MLT1C LTR MaLR 1 16 -489 279 0 0 0 chr21 35068143 35068174 -9839396 + (CA)n Simple_repeat Simple_repeat 1 31 0 259 265 88 0 chr21 35068174 35068257 -9839313 + MLT1C LTR MaLR 16 111 -394 2438 77 3 0 chr21 35068268 35068568 -9839002 + AluY SINE Alu 1 301 -10 893 243 90 11 chr21 35068579 35068847 -9838723 + MLT1C LTR MaLR 172 460 -7 33 0 0 0 chr21 35070128 35070161 -9837409 + AT_rich Low_complexity Low_complexity 1 33 0 2356 82 0 7 chr21 35070465 35070757 -9836813 - AluSq SINE Alu -23 290 1 234 122 0 0 chr21 35070870 35070911 -9836659 + L1ME3 LINE L1 6122 6162 0 248 259 267 0 chr21 35071403 35071519 -9836051 + MIR SINE MIR 4 150 -112 1930 231 118 4 chr21 35071752 35072285 -9835285 + L1ME3A LINE L1 5568 6161 -9 2074 138 0 10 chr21 35072302 35072613 -9834957 + AluSx SINE Alu 1 308 -4 1832 145 4 0 chr21 35073011 35073280 -9834290 + AluJo SINE Alu 11 280 -32 1672 177 0 17 chr21 35073565 35073864 -9833706 + AluJo SINE Alu 1 294 -18 1343 163 42 67 chr21 35073972 35074303 -9833267 + L1MC2 LINE L1 6013 6335 -9 180 0 0 0 chr21 35074308 35074328 -9833242 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 320 282 218 11 chr21 35075792 35075966 -9831604 + MIR SINE MIR 47 256 -6 201 103 0 0 chr21 35076144 35076173 -9831397 + MIR SINE MIR 228 256 -6 200 216 20 0 chr21 35076347 35076398 -9831172 + (TTG)n Simple_repeat Simple_repeat 1 52 0 270 301 100 15 chr21 35077581 35078107 -9829463 - L1ME4a LINE L1 0 6121 5494 2310 98 7 0 chr21 35078116 35078412 -9829158 - AluSx SINE Alu -14 298 1 377 257 35 42 chr21 35079537 35079681 -9827889 + LTR67 LTR ERVL 410 552 -5 4539 119 20 0 chr21 35080984 35081671 -9825899 + L1MA2 LINE L1 5604 6304 0 540 210 8 0 chr21 35081755 35081874 -9825696 + 5S rRNA rRNA 1 120 -1 527 279 28 64 chr21 35082988 35083271 -9824299 + Charlie2 DNA MER1_type 49 321 -2541 1592 229 40 20 chr21 35083279 35083733 -9823837 + Charlie2a DNA MER1_type 1617 2079 -783 1479 225 62 2 chr21 35083748 35084148 -9823422 + Charlie2a DNA MER1_type 2439 2862 0 938 298 64 6 chr21 35084475 35084804 -9822766 + MER20B DNA MER1_type 5 352 -431 523 214 163 72 chr21 35084902 35085093 -9822477 + MER20B DNA MER1_type 482 654 -129 2262 112 0 22 chr21 35085093 35085407 -9822163 + AluSx SINE Alu 1 307 -5 523 214 163 72 chr21 35085407 35085431 -9822139 + MER20B DNA MER1_type 654 674 -109 1780 168 14 7 chr21 35085431 35085722 -9821848 - AluJb SINE Alu -19 293 1 523 214 163 72 chr21 35085722 35085751 -9821819 + MER20B DNA MER1_type 674 699 -84 1649 150 25 42 chr21 35085751 35086105 -9821465 + L1MB7 LINE L1 5835 6182 -2 523 214 163 72 chr21 35086105 35086134 -9821436 + MER20B DNA MER1_type 699 782 -1 2329 117 0 0 chr21 35087623 35087932 -9819638 - AluSg SINE Alu -1 309 1 23 0 0 0 chr21 35087941 35087964 -9819606 + AT_rich Low_complexity Low_complexity 1 23 0 310 304 179 18 chr21 35088345 35088680 -9818890 - L2 LINE L2 0 3313 2925 2388 92 0 0 chr21 35088862 35089165 -9818405 - AluSg SINE Alu -7 303 1 472 233 47 27 chr21 35090018 35090168 -9817402 - MIR SINE MIR -88 174 22 217 252 72 72 chr21 35090884 35090995 -9816575 - L2 LINE L2 -1 3271 3161 1742 139 10 7 chr21 35091231 35091519 -9816051 - L1PA13 LINE L1 0 6163 5875 4316 175 35 27 chr21 35091596 35092457 -9815113 - L1MB7 LINE L1 0 6184 5317 649 105 184 18 chr21 35092789 35092903 -9814667 - FLAM_A SINE Alu 0 133 1 2623 205 99 19 chr21 35093708 35093959 -9813611 - Charlie2 DNA MER1_type -1 2861 2632 2312 99 14 0 chr21 35093959 35094251 -9813319 + AluSx SINE Alu 1 296 -16 2623 205 99 19 chr21 35094251 35094823 -9812747 - Charlie2 DNA MER1_type -230 2632 1972 371 276 62 70 chr21 35094831 35095074 -9812496 - Charlie2 DNA MER1_type -2451 331 91 276 264 22 22 chr21 35097117 35097208 -9810362 + L1M4 LINE L1 5768 5858 -320 559 202 131 99 chr21 35097265 35097547 -9810023 + MLT1J1 LTR MaLR 26 316 -130 1987 114 6 60 chr21 35097695 35098010 -9809560 + AluSx SINE Alu 1 298 -14 489 111 72 0 chr21 35098010 35098147 -9809423 + GA-rich Low_complexity Low_complexity 1 146 0 2355 52 0 28 chr21 35098942 35099276 -9808294 - AluY SINE Alu 0 326 1 21 0 0 0 chr21 35100319 35100340 -9807230 + AT_rich Low_complexity Low_complexity 1 21 0 1009 191 9 12 chr21 35101535 35101854 -9805716 + L1ME LINE L1 5200 5515 -647 1979 60 120 11 chr21 35101985 35102251 -9805319 + AluSc SINE Alu 1 295 -14 2730 230 54 26 chr21 35102365 35102958 -9804612 - L1ME2 LINE L1 -174 6059 5484 2446 89 0 0 chr21 35102958 35103260 -9804310 - AluSc SINE Alu -7 302 1 2730 230 54 26 chr21 35103260 35103467 -9804103 - L1ME2 LINE L1 -749 5484 5284 1544 194 61 4 chr21 35103467 35103745 -9803825 - AluJo SINE Alu -18 294 1 2730 230 54 26 chr21 35103745 35104056 -9803514 - L1ME2 LINE L1 -949 5284 4900 1717 52 0 0 chr21 35104056 35104292 -9803278 + AluY SINE Alu 92 327 0 2730 230 54 26 chr21 35104292 35104495 -9803075 - L1ME2 LINE L1 -1333 4900 4704 6872 180 67 59 chr21 35104501 35106163 -9801407 + MER52A LTR ERV1 9 1755 0 410 291 57 0 chr21 35106174 35106315 -9801255 - L1ME2 LINE L1 -1518 4697 4549 * 2580 272 69 25 chr21 35106311 35108146 -9799424 - L1ME2 LINE L1 -3211 3004 1118 242 380 8 8 chr21 35108563 35108684 -9798886 + L3 LINE CR1 340 460 -1117 396 327 19 28 chr21 35108734 35108945 -9798625 + MIR SINE MIR 54 262 0 232 122 20 61 chr21 35109268 35109317 -9798253 + L1ME4a LINE L1 5968 6014 -107 1627 153 85 14 chr21 35109494 35109776 -9797794 + AluJo SINE Alu 1 302 -10 208 175 25 0 chr21 35110139 35110179 -9797391 + GA-rich Low_complexity Low_complexity 5 45 0 216 0 0 0 chr21 35110223 35110247 -9797323 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2176 104 11 0 chr21 35110799 35111114 -9796456 - AluSx SINE Alu 0 318 1 934 140 22 0 chr21 35111704 35111840 -9795730 + AluSg/x SINE Alu 139 277 -35 2418 82 0 0 chr21 35111845 35112138 -9795432 + AluY SINE Alu 1 293 -18 302 213 43 94 chr21 35112149 35112245 -9795325 - MIR3 SINE MIR -48 160 67 217 0 0 0 chr21 35112278 35112302 -9795268 + (TTTTG)n Simple_repeat Simple_repeat 2 170 0 2002 99 0 76 chr21 35112302 35112605 -9794965 - AluSc SINE Alu -29 280 1 2315 200 60 10 chr21 35113653 35114138 -9793432 - LTR22 LTR ERVK 0 509 1 1955 144 0 3 chr21 35115071 35115369 -9792201 + AluJo SINE Alu 3 299 -13 320 264 113 0 chr21 35115693 35115799 -9791771 - MIR SINE MIR -98 164 47 387 167 12 24 chr21 35115908 35115992 -9791578 + MARNA DNA Mariner 311 393 -193 2301 82 0 7 chr21 35115994 35116300 -9791270 + AluY SINE Alu 1 304 -7 1221 204 57 75 chr21 35116474 35116689 -9790881 + MLT1A1 LTR MaLR 1 208 -157 2035 120 0 10 chr21 35116689 35116990 -9790580 + AluSx SINE Alu 1 298 -14 1221 204 57 75 chr21 35116990 35117146 -9790424 + MLT1A1 LTR MaLR 208 365 0 477 47 0 0 chr21 35118290 35118354 -9789216 + (TA)n Simple_repeat Simple_repeat 2 65 0 392 245 73 25 chr21 35118529 35118704 -9788866 - MIR3 SINE MIR -2 206 21 277 274 0 0 chr21 35118923 35118985 -9788585 + L2 LINE L2 3205 3266 -6 1978 118 39 60 chr21 35119721 35120104 -9787466 + THE1C LTR MaLR 1 375 0 728 259 93 44 chr21 35120791 35121260 -9786310 + MLT1J LTR MaLR 1 507 -4 365 187 27 13 chr21 35122503 35122578 -9784992 + MLT1J LTR MaLR 5 80 -431 692 134 0 0 chr21 35122811 35122908 -9784662 - FLAM_C SINE Alu -35 108 12 2133 103 0 7 chr21 35122924 35123216 -9784354 - AluSx SINE Alu -22 290 1 2028 119 72 13 chr21 35123351 35123669 -9783901 - MER1B DNA MER1_type 0 337 1 2300 97 156 5 chr21 35123805 35124177 -9783393 + MSTA LTR MaLR 1 428 0 1894 128 0 0 chr21 35125922 35126196 -9781374 + AluJb SINE Alu 11 284 -28 404 254 100 113 chr21 35127912 35128010 -9779560 + L1MC5 LINE L1 7311 7409 -552 2230 93 3 3 chr21 35128010 35128321 -9779249 + AluSq SINE Alu 3 313 0 404 254 100 113 chr21 35128321 35128623 -9778947 + L1MC5 LINE L1 7409 7703 -258 1853 151 0 0 chr21 35128623 35128915 -9778655 + AluJb SINE Alu 1 292 -20 404 254 100 113 chr21 35128915 35129142 -9778428 + L1MC5 LINE L1 7703 7931 -30 1944 130 3 0 chr21 35129186 35129470 -9778100 + AluSx SINE Alu 1 285 -27 1930 299 66 50 chr21 35129522 35129668 -9777902 - L2 LINE L2 -2 3311 3169 2034 132 0 3 chr21 35129668 35129979 -9777591 + AluSx SINE Alu 3 312 0 1930 299 66 50 chr21 35129979 35130823 -9776747 - L2 LINE L2 -144 3169 2313 1844 116 61 27 chr21 35130823 35131117 -9776453 + AluSx SINE Alu 1 304 -8 1930 299 66 50 chr21 35131117 35131282 -9776288 - L2 LINE L2 -1000 2313 2152 1618 206 66 30 chr21 35131289 35131727 -9775843 - MLT1C LTR MaLR -13 454 1 1167 267 80 106 chr21 35131727 35132752 -9774818 - L2 LINE L2 -1187 2127 1130 213 309 0 0 chr21 35133539 35133594 -9773976 - L2 LINE L2 -2 3311 3257 1226 218 100 38 chr21 35133624 35133995 -9773575 + MSTD LTR MaLR 1 394 -2 381 293 186 32 chr21 35134845 35135098 -9772472 + L2 LINE L2 3019 3310 -3 2178 190 45 67 chr21 35135525 35135613 -9771957 + L1ME1 LINE L1 4234 4322 -1824 2057 131 7 0 chr21 35135613 35135919 -9771651 + AluSx SINE Alu 1 308 -4 2178 190 45 67 chr21 35135919 35136104 -9771466 + L1ME1 LINE L1 4322 4510 -1636 1518 176 7 21 chr21 35136104 35136393 -9771177 + AluJo SINE Alu 16 300 -12 2178 190 45 67 chr21 35136393 35136743 -9770827 + L1ME1 LINE L1 4510 4844 -1302 668 182 0 16 chr21 35136754 35136875 -9770695 - FRAM SINE Alu -15 161 43 1801 205 30 43 chr21 35136880 35137217 -9770353 + L1ME1 LINE L1 4851 5168 -996 2062 121 14 0 chr21 35137217 35137514 -9770056 + AluSx SINE Alu 1 301 -11 1801 205 30 43 chr21 35137514 35137823 -9769747 + L1ME1 LINE L1 5168 5480 -684 665 171 0 0 chr21 35137829 35137940 -9769630 + FRAM SINE Alu 64 174 -2 1677 173 3 19 chr21 35137946 35138253 -9769317 + AluJo SINE Alu 1 302 -10 2397 181 119 58 chr21 35138270 35138764 -9768806 + L1ME1 LINE L1 5495 6193 -141 2124 80 0 10 chr21 35138764 35139052 -9768518 + AluY SINE Alu 9 293 -18 2397 181 119 58 chr21 35139052 35139203 -9768367 + L1ME1 LINE L1 6193 6333 -1 854 199 0 0 chr21 35139439 35139590 -9767980 - FRAM SINE Alu -15 161 11 2060 108 0 3 chr21 35140106 35140403 -9767167 + AluSx SINE Alu 1 296 -16 266 253 92 0 chr21 35140907 35140994 -9766576 + Charlie8 DNA MER1_type 72 166 -2251 227 37 0 0 chr21 35141276 35141303 -9766267 + L1MB4 LINE L1 5579 5605 -579 2392 65 0 16 chr21 35141306 35141615 -9765955 + AluY SINE Alu 1 304 -7 2233 99 0 7 chr21 35141629 35141932 -9765638 + AluSq SINE Alu 1 301 -12 2704 189 15 30 chr21 35141932 35142521 -9765049 + L1MB4 LINE L1 5598 6179 -1 328 257 34 68 chr21 35142946 35143094 -9764476 - MIR SINE MIR -109 153 11 1946 105 20 17 chr21 35143322 35143617 -9763953 + AluSq SINE Alu 1 296 -17 298 256 23 78 chr21 35143877 35144006 -9763564 - LTR33 LTR ERVL -307 214 93 275 167 0 0 chr21 35144265 35144307 -9763263 + L2 LINE L2 3262 3303 -10 181 246 115 85 chr21 35144975 35145105 -9762465 + MIR3 SINE MIR 34 167 -41 237 336 92 46 chr21 35145830 35145961 -9761609 - L2 LINE L2 -21 3251 3115 1335 164 35 90 chr21 35146204 35146514 -9761056 - AluJo SINE Alu -19 293 1 262 261 9 61 chr21 35146848 35146963 -9760607 + L1MC4 LINE L1 7933 8041 -1 904 252 31 22 chr21 35148779 35149096 -9758474 + L1MC5 LINE L1 7592 7911 -50 1608 191 7 10 chr21 35149893 35150197 -9757373 + AluJo SINE Alu 3 305 -7 1752 142 17 17 chr21 35150208 35150510 -9757060 + L1MA2 LINE L1 6003 6304 0 2271 88 7 0 chr21 35151006 35151303 -9756267 + AluSg SINE Alu 1 299 -11 213 217 29 14 chr21 35151818 35151887 -9755683 + (TA)n Simple_repeat Simple_repeat 2 71 0 391 213 0 0 chr21 35152086 35152166 -9755404 - L1MA8 LINE L1 -2 6289 6210 2184 119 0 0 chr21 35154119 35154429 -9753141 + AluSq SINE Alu 1 310 -3 309 180 0 0 chr21 35154758 35154819 -9752751 + L1MA9 LINE L1 6216 6276 -36 334 164 103 82 chr21 35156457 35156575 -9750995 - L1ME4a LINE L1 -23 6098 5975 2024 141 0 10 chr21 35156575 35156887 -9750683 - AluJb SINE Alu -3 309 1 334 164 103 82 chr21 35156887 35156914 -9750656 - L1ME4a LINE L1 -146 5975 5950 187 274 0 0 chr21 35157422 35157473 -9750097 + MIR SINE MIR 212 262 0 1866 143 17 3 chr21 35158133 35158427 -9749143 + AluJb SINE Alu 1 298 -14 956 118 0 22 chr21 35160350 35160486 -9747084 - FLAM_C SINE Alu 0 133 1 197 250 0 0 chr21 35160780 35160820 -9746750 + MIR SINE MIR 71 110 -152 2382 72 3 0 chr21 35160843 35161150 -9746420 + AluSp SINE Alu 1 308 -5 1815 132 18 4 chr21 35161322 35161603 -9745967 + AluJb SINE Alu 14 298 -14 3386 165 25 26 chr21 35161631 35162237 -9745333 + MER6A DNA MER2_type 1 605 0 2025 123 0 0 chr21 35162677 35162970 -9744600 + AluSx SINE Alu 1 293 -19 1731 97 8 12 chr21 35163169 35163417 -9744153 + AluSq SINE Alu 61 307 -6 690 238 7 0 chr21 35164099 35164246 -9743324 + MER20 DNA MER1_type 72 219 0 271 254 18 0 chr21 35167732 35167787 -9739783 - L2 LINE L2 -2 3270 3215 1593 158 14 28 chr21 35168360 35168645 -9738925 - AluJb SINE Alu -31 281 1 299 318 28 34 chr21 35169228 35169407 -9738163 + MER5A DNA MER1_type 7 184 -5 210 223 143 45 chr21 35169605 35169717 -9737853 + MIR SINE MIR 23 145 -63 1412 90 0 0 chr21 35169721 35169909 -9737661 + AluSg/x SINE Alu 114 301 -11 22 70 0 0 chr21 35170142 35170185 -9737385 + AT_rich Low_complexity Low_complexity 1 43 0 709 194 0 0 chr21 35170188 35170317 -9737253 - FLAM_A SINE Alu -4 129 1 677 221 22 39 chr21 35170582 35170607 -9736963 + L1ME2 LINE L1 4775 4799 -1347 1748 134 59 93 chr21 35170607 35170771 -9736799 + THE1C LTR MaLR 2 170 -205 1984 130 0 0 chr21 35170771 35171055 -9736515 + AluSx SINE Alu 1 284 -28 1748 134 59 93 chr21 35171055 35171277 -9736293 + THE1C LTR MaLR 170 375 0 677 221 22 39 chr21 35171277 35171432 -9736138 + L1ME2 LINE L1 4799 4952 -1194 1525 112 56 42 chr21 35171436 35171564 -9736006 + AluSq SINE Alu 1 126 -187 2083 103 7 7 chr21 35171564 35171865 -9735705 + AluSq SINE Alu 1 301 -12 1525 112 56 42 chr21 35171865 35172023 -9735547 + AluSq SINE Alu 126 291 -22 799 93 0 0 chr21 35172161 35172269 -9735301 + AluSg/x SINE Alu 201 308 -1 1158 177 60 34 chr21 35172270 35172630 -9734940 + L1ME2 LINE L1 4947 5340 -813 1140 84 0 0 chr21 35172641 35172796 -9734774 + AluY SINE Alu 152 306 -5 1397 182 63 13 chr21 35172796 35173098 -9734472 + L1ME2 LINE L1 5361 5677 -501 1733 132 34 30 chr21 35173379 35173675 -9733895 + AluJb SINE Alu 1 297 -15 1296 243 47 6 chr21 35174012 35174374 -9733196 + L1ME2 LINE L1 5787 6163 -1 221 253 0 13 chr21 35174405 35174480 -9733090 + T-rich Low_complexity Low_complexity 5 78 0 2250 86 7 0 chr21 35174682 35174974 -9732596 + AluY SINE Alu 1 294 -17 311 114 0 0 chr21 35175006 35175050 -9732520 + L1MA9 LINE L1 6047 6090 -222 2571 167 30 18 chr21 35175163 35175661 -9731909 + L1MB7 LINE L1 5662 6165 -19 539 321 43 0 chr21 35175716 35175900 -9731670 + MIR SINE MIR 23 214 -48 546 98 0 152 chr21 35176008 35176078 -9731492 + MER106B DNA MER1_type 57 105 -954 1981 141 16 0 chr21 35176078 35176383 -9731187 - AluJo SINE Alu -2 310 1 546 98 0 152 chr21 35176383 35176424 -9731146 + MER106B DNA MER1_type 105 151 -908 2120 109 0 3 chr21 35177851 35178154 -9729416 + AluSg SINE Alu 1 302 -8 2006 130 3 3 chr21 35178288 35178596 -9728974 + AluJb SINE Alu 1 308 -4 1699 262 78 19 chr21 35178982 35179467 -9728103 - MLT1G1 LTR MaLR 0 595 82 252 301 21 21 chr21 35179642 35179735 -9727835 + MLT1I LTR MaLR 291 383 -26 1105 156 0 62 chr21 35180309 35180533 -9727037 - AluJo SINE Alu -17 295 86 468 286 85 94 chr21 35181198 35181540 -9726030 + L2 LINE L2 2927 3265 -7 2238 95 3 0 chr21 35182353 35182657 -9724913 + AluSc SINE Alu 1 305 -4 627 246 75 123 chr21 35182730 35182947 -9724623 + MLT1J LTR MaLR 1 227 -284 698 166 106 46 chr21 35182947 35183098 -9724472 - FRAM SINE Alu -2 164 5 627 246 75 123 chr21 35183098 35183417 -9724153 + MLT1J LTR MaLR 227 511 0 23 33 0 0 chr21 35183601 35183631 -9723939 + AT_rich Low_complexity Low_complexity 1 30 0 2721 142 73 60 chr21 35183667 35183865 -9723705 + Tigger3b DNA MER2_type 1 195 -2833 2081 75 11 7 chr21 35183865 35184168 -9723402 + AluSc SINE Alu 1 304 0 2300 70 3 7 chr21 35184174 35184472 -9723098 + AluY SINE Alu 1 297 -14 2721 142 73 60 chr21 35184472 35184588 -9722982 + Tigger3b DNA MER2_type 199 312 -2716 275 0 29 0 chr21 35184588 35184623 -9722947 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1903 132 7 0 chr21 35184623 35184910 -9722660 + AluSx SINE Alu 2 290 -22 2721 142 73 60 chr21 35184910 35185149 -9722421 + Tigger3b DNA MER2_type 311 571 -660 506 238 0 9 chr21 35185152 35185257 -9722313 + FLAM_C SINE Alu 2 105 -38 3849 116 60 18 chr21 35185297 35185952 -9721618 + Tigger3b DNA MER2_type 545 1226 -5 2152 88 0 7 chr21 35186288 35186603 -9720967 + AluY SINE Alu 1 313 0 2061 96 3 7 chr21 35186621 35186913 -9720657 + AluSx SINE Alu 11 301 -11 1903 189 111 8 chr21 35186931 35187317 -9720253 + MSTB LTR MaLR 1 426 0 301 194 14 42 chr21 35187320 35187392 -9720178 - MER116 DNA Mariner -9 71 2 34 55 0 0 chr21 35187396 35187451 -9720119 + AT_rich Low_complexity Low_complexity 1 55 0 2088 93 21 0 chr21 35187495 35187785 -9719785 + AluY SINE Alu 1 296 -15 2118 78 48 0 chr21 35187787 35187907 -9719663 + AluY SINE Alu 1 114 -197 212 0 0 35 chr21 35187907 35187936 -9719634 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2118 78 48 0 chr21 35187936 35188110 -9719460 + AluY SINE Alu 114 309 -2 2070 109 3 3 chr21 35188348 35188650 -9718920 + AluSx SINE Alu 1 302 -10 249 272 48 80 chr21 35188655 35188780 -9718790 + MIR SINE MIR 66 186 -76 6163 167 244 26 chr21 35188795 35190202 -9717368 + MER52A LTR ERV1 43 1755 0 698 225 19 0 chr21 35191217 35191377 -9716193 + FRAM SINE Alu 2 164 -12 452 62 74 0 chr21 35191378 35191459 -9716111 - Charlie5 DNA MER1_type -37 2575 2489 2234 100 0 0 chr21 35191513 35191813 -9715757 + AluSx SINE Alu 1 300 -12 1916 126 3 19 chr21 35192348 35192657 -9714913 + AluJb SINE Alu 1 304 -8 2158 75 35 0 chr21 35193321 35193603 -9713967 + AluSp SINE Alu 1 292 -21 2062 95 3 11 chr21 35193782 35194067 -9713503 + AluSx SINE Alu 2 284 -28 362 169 88 163 chr21 35194765 35194925 -9712645 + MER105 DNA DNA 5 152 -52 220 167 143 60 chr21 35195272 35195356 -9712214 - MIR SINE MIR -111 151 61 1690 111 3 97 chr21 35195559 35195901 -9711669 - AluJo SINE Alu -2 310 1 22 56 0 0 chr21 35196247 35196283 -9711287 + GC_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr21 35196332 35196365 -9711205 + GC_rich Low_complexity Low_complexity 1 33 0 44 80 0 0 chr21 35196480 35196580 -9710990 + GC_rich Low_complexity Low_complexity 1 100 0 291 274 0 51 chr21 35196584 35196759 -9710811 + G-rich Low_complexity Low_complexity 3 168 0 2259 77 7 0 chr21 35197562 35197861 -9709709 - AluSx SINE Alu -11 301 1 1245 152 140 34 chr21 35197869 35198133 -9709437 - AluJo SINE Alu -20 292 1 479 255 183 0 chr21 35199173 35199326 -9708244 + MER5A DNA MER1_type 9 189 0 2124 93 24 0 chr21 35199423 35199714 -9707856 - AluSx SINE Alu -14 298 1 1744 174 0 0 chr21 35200075 35200374 -9707196 - AluJb SINE Alu -13 299 1 930 125 0 7 chr21 35200374 35200510 -9707060 - AluJo SINE Alu -177 135 1 2373 71 0 7 chr21 35200553 35200862 -9706708 + AluY SINE Alu 2 308 -3 768 222 127 24 chr21 35201027 35201353 -9706217 + L1MC4 LINE L1 6564 7008 -885 2008 134 0 0 chr21 35201388 35201687 -9705883 + AluSx SINE Alu 1 299 -13 617 235 23 0 chr21 35202155 35202287 -9705283 - FLAM_C SINE Alu -7 136 2 1559 159 0 48 chr21 35202775 35203070 -9704500 + AluJb SINE Alu 1 281 -31 216 0 0 0 chr21 35203070 35203094 -9704476 + (T)n Simple_repeat Simple_repeat 1 24 0 290 273 70 35 chr21 35203104 35203276 -9704294 + L1M4 LINE L1 5212 5389 -757 691 249 146 56 chr21 35203471 35203554 -9704016 - LTR33A LTR ERVL -15 508 434 2149 75 4 4 chr21 35203554 35203856 -9703714 + AluSq SINE Alu 5 306 0 691 249 146 56 chr21 35203856 35204235 -9703335 - LTR33A LTR ERVL -89 434 2 1645 186 70 20 chr21 35204315 35204753 -9702817 + MLT1B LTR MaLR 5 390 0 1261 165 5 0 chr21 35205418 35205630 -9701940 + AluJo SINE Alu 87 299 -13 436 316 102 28 chr21 35205689 35205904 -9701666 - MIR SINE MIR -11 251 21 228 67 0 0 chr21 35206234 35206264 -9701306 + (CA)n Simple_repeat Simple_repeat 1 30 0 1128 113 24 0 chr21 35206265 35206433 -9701137 + AluSg/x SINE Alu 119 290 -20 715 142 135 0 chr21 35206445 35206586 -9700984 + L1MD3 LINE L1 7825 7984 -11 402 280 35 42 chr21 35206637 35206780 -9700790 + MIR3 SINE MIR 60 201 -7 294 292 14 0 chr21 35206826 35206898 -9700672 + L2 LINE L2 3185 3257 -15 186 225 124 172 chr21 35207483 35207652 -9699918 + MIR3 SINE MIR 4 164 -98 2098 106 10 7 chr21 35208055 35208358 -9699212 + AluSx SINE Alu 1 304 -8 2363 70 0 13 chr21 35208829 35209144 -9698426 + AluY SINE Alu 1 311 0 1366 189 19 29 chr21 35209474 35209616 -9697954 + AluJo SINE Alu 1 143 -169 1627 128 110 4 chr21 35209616 35209897 -9697673 + AluJb SINE Alu 1 311 -1 1366 189 19 29 chr21 35209897 35210066 -9697504 + AluJo SINE Alu 143 309 -3 315 291 70 70 chr21 35210821 35211020 -9696550 + L2 LINE L2 2993 3191 -81 2222 105 3 0 chr21 35211238 35211542 -9696028 - AluSx SINE Alu -7 305 1 626 304 74 45 chr21 35211911 35212315 -9695255 - L1ME3A LINE L1 -222 5948 5533 2187 95 0 19 chr21 35212591 35212906 -9694664 + AluSg1 SINE Alu 1 309 0 2112 117 0 19 chr21 35213036 35213353 -9694217 - AluSx SINE Alu -1 311 1 2304 71 0 0 chr21 35213398 35213693 -9693877 + AluY SINE Alu 1 295 -16 1446 184 28 10 chr21 35213693 35213981 -9693589 - AluJo SINE Alu -19 293 1 1866 155 153 107 chr21 35214050 35214420 -9693150 - MER44D DNA MER2_type -1883 604 147 1372 143 42 17 chr21 35214420 35214657 -9692913 + L1PB4 LINE L1 5911 6153 -3 1866 155 153 107 chr21 35214657 35214810 -9692760 - MER44D DNA MER2_type -2340 147 2 1032 186 82 73 chr21 35214838 35215193 -9692377 - L1MC4 LINE L1 -139 7903 7546 1161 44 0 0 chr21 35215194 35215329 -9692241 + AluSq/x SINE Alu 1 135 -178 2169 101 0 3 chr21 35215330 35215628 -9691942 + AluSc SINE Alu 2 298 -11 422 201 205 3 chr21 35215631 35215841 -9691729 - L1MC4 LINE L1 -341 7467 7195 1910 142 159 14 chr21 35215857 35216203 -9691367 + MSTD LTR MaLR 1 396 0 2026 102 20 10 chr21 35216258 35216561 -9691009 - AluSp SINE Alu -7 306 1 797 119 0 0 chr21 35216586 35216695 -9690875 - HY1 scRNA scRNA -3 109 1 4486 220 103 72 chr21 35216698 35217174 -9690396 - L1MC4a LINE L1 -723 7085 6625 2173 108 0 0 chr21 35217174 35217470 -9690100 + AluSx SINE Alu 1 296 -16 4486 220 103 72 chr21 35217470 35218803 -9688767 - L1MC4a LINE L1 -1183 6625 5215 1237 165 93 21 chr21 35218837 35218870 -9688700 - AluJb SINE Alu 0 312 283 210 37 0 0 chr21 35218870 35218897 -9688673 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1237 165 93 21 chr21 35218897 35219154 -9688416 - AluJb SINE Alu -29 283 1 2158 96 3 16 chr21 35219158 35219472 -9688098 - AluSq SINE Alu -3 310 1 1423 227 133 83 chr21 35220428 35221092 -9686478 - MER21B LTR ERV1 -158 705 9 1967 143 59 22 chr21 35221097 35221197 -9686373 + L1MC3 LINE L1 7345 7440 -345 1935 172 52 47 chr21 35221197 35221640 -9685930 + MER65A LTR ERV1 1 445 0 1967 143 59 22 chr21 35221640 35221944 -9685626 + L1MC3 LINE L1 7440 7764 -21 1630 152 14 4 chr21 35221983 35222259 -9685311 + AluJb SINE Alu 18 296 -16 682 209 31 0 chr21 35222292 35222421 -9685149 + FLAM_A SINE Alu 1 133 0 1963 132 0 3 chr21 35222848 35223151 -9684419 + AluSx SINE Alu 1 302 -10 1393 219 133 24 chr21 35223211 35223632 -9683938 + MLT1C LTR MaLR 1 467 0 497 242 51 51 chr21 35223887 35224065 -9683505 + L1MC/D LINE L1 5632 5809 -1999 2152 88 3 7 chr21 35224066 35224372 -9683198 + AluSg SINE Alu 1 305 -5 1973 134 7 0 chr21 35225243 35225550 -9682020 + AluSx SINE Alu 1 309 -3 1840 158 13 7 chr21 35225978 35226288 -9681282 + AluJb SINE Alu 1 312 0 1992 85 21 21 chr21 35226357 35226663 -9680907 - AluSc SINE Alu 0 306 1 578 314 72 8 chr21 35226840 35227076 -9680494 + MIR SINE MIR 8 258 -4 263 311 78 19 chr21 35227105 35227208 -9680362 + MIR3 SINE MIR 93 201 -7 1955 118 7 0 chr21 35227355 35227644 -9679926 + AluSx SINE Alu 1 291 -21 1055 202 24 70 chr21 35227646 35227956 -9679614 - MLT1C LTR MaLR -33 434 140 1303 215 15 82 chr21 35227956 35228347 -9679223 - MLT1A1 LTR MaLR 0 365 1 1055 202 24 70 chr21 35228347 35228377 -9679193 - MLT1C LTR MaLR -327 140 110 300 111 0 0 chr21 35228391 35228436 -9679134 + (TCC)n Simple_repeat Simple_repeat 3 47 0 989 173 0 0 chr21 35228438 35228606 -9678964 - FRAM SINE Alu -10 166 1 449 210 20 30 chr21 35228610 35228710 -9678860 - MLT1C LTR MaLR -391 114 16 476 221 80 158 chr21 35228906 35229003 -9678567 - L2 LINE L2 -71 3242 3139 1797 158 0 3 chr21 35229003 35229294 -9678276 + AluJb SINE Alu 1 290 -22 476 221 80 158 chr21 35229294 35229644 -9677926 - L2 LINE L2 -174 3139 2830 1166 148 0 0 chr21 35229723 35229905 -9677665 - AluSp SINE Alu 0 313 132 2398 83 3 0 chr21 35229910 35230222 -9677348 - AluSp SINE Alu 0 313 1 2607 196 53 8 chr21 35230259 35230823 -9676747 + L1MB3 LINE L1 5593 6183 0 2060 139 0 0 chr21 35230842 35231152 -9676418 + AluSx SINE Alu 1 310 -2 1015 184 29 0 chr21 35231956 35232162 -9675408 - L1MC3 LINE L1 -655 7130 6919 1873 141 0 31 chr21 35232268 35232588 -9674982 - AluSx SINE Alu -2 310 1 2078 129 0 0 chr21 35232625 35232935 -9674635 - AluSg SINE Alu 0 310 1 353 274 39 48 chr21 35232947 35233094 -9674476 + MIR SINE MIR 54 202 -60 1538 138 35 0 chr21 35233110 35233371 -9674199 + L1MB4 LINE L1 5910 6179 -1 263 228 243 0 chr21 35233490 35233626 -9673944 - L1ME4a LINE L1 -208 5913 5745 868 173 0 46 chr21 35233741 35233914 -9673656 - FRAM SINE Alu -11 165 1 1155 142 0 0 chr21 35234014 35234183 -9673387 + AluJb SINE Alu 135 303 -9 31 0 0 0 chr21 35234240 35234271 -9673299 + AT_rich Low_complexity Low_complexity 1 31 0 1548 165 4 4 chr21 35234281 35234560 -9673010 - AluJb SINE Alu -33 279 1 2258 76 0 13 chr21 35234769 35235073 -9672497 - AluSq SINE Alu -8 305 6 2082 99 3 13 chr21 35235090 35235392 -9672178 - AluSx SINE Alu -13 299 1 21 0 0 0 chr21 35236495 35236516 -9671054 + GC_rich Low_complexity Low_complexity 1 21 0 2322 84 0 0 chr21 35237247 35237555 -9670015 - AluSx SINE Alu -4 308 1 2297 82 3 0 chr21 35238322 35238627 -9668943 + AluSx SINE Alu 1 306 -6 2022 105 7 13 chr21 35240058 35240364 -9667206 + AluSx SINE Alu 1 304 -8 1907 82 3 67 chr21 35240839 35241154 -9666416 - AluSq SINE Alu -18 295 1 2003 40 135 4 chr21 35241531 35241805 -9665765 + AluY SINE Alu 1 310 -1 1990 101 3 11 chr21 35242059 35242390 -9665180 - AluSx SINE Alu 0 329 1 186 278 93 41 chr21 35242501 35242598 -9664972 + L2 LINE L2 2692 2793 -521 1237 86 0 0 chr21 35242713 35242875 -9664695 - AluSx SINE Alu -11 299 138 398 156 31 0 chr21 35242891 35242955 -9664615 - AluSx SINE Alu -235 68 3 181 321 114 46 chr21 35243089 35243220 -9664350 + L2 LINE L2 3096 3235 -37 2277 75 0 7 chr21 35243887 35244180 -9663390 + AluSq SINE Alu 5 295 -18 213 139 0 0 chr21 35244354 35244397 -9663173 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 1512 191 14 7 chr21 35244583 35244877 -9662693 - AluJo SINE Alu -16 296 1 402 277 84 0 chr21 35244881 35245000 -9662570 - MER5B DNA MER1_type 0 178 50 2047 114 3 22 chr21 35245002 35245319 -9662251 - AluSx SINE Alu -1 311 1 411 243 40 88 chr21 35245408 35245557 -9662013 - L1MC5 LINE L1 -34 7927 7790 1511 161 37 18 chr21 35245557 35245859 -9661711 - AluJb SINE Alu 0 311 5 411 243 40 88 chr21 35245859 35245934 -9661636 - L1MC5 LINE L1 -171 7790 7713 1144 163 33 0 chr21 35246006 35246190 -9661380 - MER20 DNA MER1_type 0 219 30 1751 159 10 3 chr21 35246405 35246700 -9660870 + AluJo SINE Alu 6 302 -10 2017 125 10 0 chr21 35246723 35247020 -9660550 + AluSx SINE Alu 1 300 -12 2075 104 0 3 chr21 35248555 35248843 -9658727 - AluSq SINE Alu -26 287 1 30 27 0 0 chr21 35248843 35248880 -9658690 + AT_rich Low_complexity Low_complexity 1 37 0 1756 70 4 0 chr21 35248914 35249144 -9658426 + AluSp SINE Alu 83 313 0 24 0 0 0 chr21 35249304 35249328 -9658242 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr21 35249593 35249638 -9657932 + AT_rich Low_complexity Low_complexity 1 45 0 1298 167 16 79 chr21 35249648 35249816 -9657754 - AluJo SINE Alu -14 298 158 2091 108 3 0 chr21 35249816 35250104 -9657466 - AluSq SINE Alu -24 289 1 1298 167 16 79 chr21 35250104 35250253 -9657317 - AluJo SINE Alu -154 158 1 28 0 0 0 chr21 35250507 35250535 -9657035 + AT_rich Low_complexity Low_complexity 1 28 0 1745 133 14 7 chr21 35250851 35251136 -9656434 + AluJb SINE Alu 2 288 -24 401 200 51 74 chr21 35251377 35251411 -9656159 - Charlie7 DNA MER1_type -17 2595 2562 1568 182 7 3 chr21 35251411 35251713 -9655857 + AluJo SINE Alu 1 303 -9 401 200 51 74 chr21 35251713 35251756 -9655814 - Charlie7 DNA MER1_type -50 2562 2520 462 128 0 13 chr21 35251756 35251834 -9655736 + MER116 DNA Mariner 1 77 -3 401 200 51 74 chr21 35251834 35251911 -9655659 - Charlie7 DNA MER1_type -92 2520 2442 757 96 122 0 chr21 35251911 35252026 -9655544 + FLAM_C SINE Alu 5 133 0 401 200 51 74 chr21 35252026 35252044 -9655526 - Charlie7 DNA MER1_type -170 2442 2425 3474 107 6 12 chr21 35252052 35252564 -9655006 - L1PA13 LINE L1 -6 6157 5649 6532 155 41 46 chr21 35252568 35252865 -9654705 - L1PA8A LINE L1 -44 6087 5790 2304 61 10 7 chr21 35252865 35253162 -9654408 - AluY SINE Alu -13 298 1 6532 155 41 46 chr21 35253162 35253442 -9654128 - L1PA8A LINE L1 -341 5790 5510 252 0 0 0 chr21 35253442 35253470 -9654100 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6532 155 41 46 chr21 35253470 35253847 -9653723 - L1PA8A LINE L1 -621 5510 5132 2120 133 0 0 chr21 35253847 35254155 -9653415 - AluSx SINE Alu -4 308 1 6532 155 41 46 chr21 35254155 35254706 -9652864 - L1PA8A LINE L1 -999 5132 4589 2304 75 0 0 chr21 35254706 35255001 -9652569 + AluY SINE Alu 1 295 -16 6532 155 41 46 chr21 35255001 35255445 -9652125 - L1PA8A LINE L1 -1542 4589 4144 478 238 116 14 chr21 35255542 35255689 -9651881 - Charlie7 DNA MER1_type -405 2207 2046 1888 136 13 25 chr21 35255715 35256032 -9651538 - AluSq SINE Alu 0 313 1 1006 192 10 5 chr21 35256052 35256255 -9651315 - AluJo SINE Alu -76 236 33 356 295 81 0 chr21 35256396 35256545 -9651025 + Charlie8 DNA MER1_type 106 266 -2151 2688 230 147 26 chr21 35256556 35257453 -9650117 - Charlie7 DNA MER1_type -1201 1411 406 1487 168 53 11 chr21 35257453 35257630 -9649940 - AluJo SINE Alu -7 305 110 312 27 0 0 chr21 35257630 35257667 -9649903 + (TG)n Simple_repeat Simple_repeat 2 38 0 1487 168 53 11 chr21 35257667 35257774 -9649796 - AluJo SINE Alu -202 110 9 1203 143 58 88 chr21 35257802 35257836 -9649734 - L1MB7 LINE L1 -19 6165 6131 2109 103 3 0 chr21 35257836 35258126 -9649444 - AluSp SINE Alu -22 291 1 1203 143 58 88 chr21 35258126 35258156 -9649414 - L1MB7 LINE L1 -53 6131 6102 1897 144 0 13 chr21 35258156 35258461 -9649109 + AluJb SINE Alu 1 301 -11 1203 143 58 88 chr21 35258461 35258689 -9648881 - L1MB7 LINE L1 -82 6102 5881 23 68 0 0 chr21 35258689 35258733 -9648837 + AT_rich Low_complexity Low_complexity 1 44 0 225 60 20 40 chr21 35259464 35259514 -9648056 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2884 55 13 31 chr21 35259530 35259748 -9647822 - THE1C LTR MaLR -1 374 163 2161 89 4 0 chr21 35259748 35260054 -9647516 + AluSp SINE Alu 1 307 0 2884 55 13 31 chr21 35260054 35260215 -9647355 - THE1C LTR MaLR -212 163 1 700 231 7 0 chr21 35260215 35260358 -9647212 - AluJb SINE Alu -32 280 137 1332 258 131 4 chr21 35260366 35260816 -9646754 - L1ME3A LINE L1 -5 6165 5659 306 261 36 27 chr21 35260847 35260958 -9646612 - L1ME3A LINE L1 -2962 3184 3073 234 0 0 0 chr21 35260965 35260991 -9646579 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 2080 124 0 3 chr21 35260991 35261298 -9646272 - AluJb SINE Alu -6 306 1 1147 115 0 0 chr21 35261651 35261807 -9645763 - AluSg/x SINE Alu -23 289 134 1915 150 0 7 chr21 35261807 35262113 -9645457 - AluSx SINE Alu -8 304 1 1641 165 11 3 chr21 35262522 35262807 -9644763 - AluJo SINE Alu -24 288 2 348 177 98 1 chr21 35263156 35263248 -9644322 + L1ME1 LINE L1 5376 5474 -821 27 0 0 0 chr21 35263248 35263275 -9644295 + AT_rich Low_complexity Low_complexity 1 27 0 1869 152 28 22 chr21 35263275 35263638 -9643932 - L1MA7 LINE L1 -2 6289 5925 387 86 27 21 chr21 35263638 35263714 -9643856 - MLT2A2 LTR ERVL 0 453 397 383 127 66 12 chr21 35263745 35263911 -9643659 + (TA)n Simple_repeat Simple_repeat 1 175 0 389 211 22 22 chr21 35263915 35264005 -9643565 + L1MC4 LINE L1 6614 6703 -1339 3156 81 0 5 chr21 35264017 35264423 -9643147 - MLT2A1 LTR ERVL -40 404 1 1713 165 12 42 chr21 35264423 35264496 -9643074 - L1MA7 LINE L1 -362 5929 5855 1912 86 72 7 chr21 35264496 35264774 -9642796 - AluSq SINE Alu -17 296 1 1713 165 12 42 chr21 35264774 35265023 -9642547 - L1MA7 LINE L1 -436 5855 5600 249 53 26 0 chr21 35265023 35265061 -9642509 + (TTTTA)n Simple_repeat Simple_repeat 3 170 0 1960 127 7 38 chr21 35265061 35265352 -9642218 - AluSx SINE Alu -30 282 1 1713 165 12 42 chr21 35265352 35265366 -9642204 - L1MA7 LINE L1 -689 5602 5602 2784 229 4 41 chr21 35265367 35265493 -9642077 + L1ME1 LINE L1 5485 5614 -552 1527 154 67 32 chr21 35265493 35265612 -9641958 + AluJb SINE Alu 3 116 -196 2422 81 0 3 chr21 35265612 35265910 -9641660 - AluSc SINE Alu -12 297 1 1527 154 67 32 chr21 35265910 35266075 -9641495 + AluJb SINE Alu 116 297 -15 2784 229 4 41 chr21 35266075 35266395 -9641175 + L1ME1 LINE L1 5614 5898 -268 2276 98 0 22 chr21 35266395 35266712 -9640858 - AluSg SINE Alu 0 310 1 2784 229 4 41 chr21 35266712 35266966 -9640604 + L1ME1 LINE L1 5898 6160 -6 924 206 49 45 chr21 35267648 35267934 -9639636 - L1ME3A LINE L1 -8 6162 5876 800 212 19 24 chr21 35267953 35268165 -9639405 - L1ME3A LINE L1 -369 5801 5591 1872 131 21 7 chr21 35268562 35268844 -9638726 - AluJb SINE Alu 0 312 27 820 111 41 6 chr21 35269510 35269682 -9637888 + CT-rich Low_complexity Low_complexity 2 179 0 1556 151 14 58 chr21 35269703 35269995 -9637575 - AluJo SINE Alu -33 279 1 1881 148 40 0 chr21 35270411 35270689 -9636881 + AluJb SINE Alu 1 289 -23 975 177 23 14 chr21 35270913 35271128 -9636442 - L1MB8 LINE L1 0 6178 5962 1423 88 0 22 chr21 35271133 35271314 -9636256 + AluSq SINE Alu 1 177 -136 2197 101 11 11 chr21 35271968 35272255 -9635315 + AluSx SINE Alu 1 287 -25 256 243 54 0 chr21 35272715 35272789 -9634781 + MER116 DNA Mariner 1 78 -2 2085 141 0 7 chr21 35272799 35273133 -9634437 - AluJb SINE Alu 0 312 1 2420 95 0 0 chr21 35273306 35273610 -9633960 + AluSx SINE Alu 1 304 -8 459 276 0 16 chr21 35274662 35274785 -9632785 - L2 LINE L2 -6 3266 3146 548 257 82 5 chr21 35274802 35275008 -9632562 + MER5C DNA MER1_type 1 222 -102 510 113 0 0 chr21 35275008 35275088 -9632482 - AluS SINE Alu -5 304 225 689 155 0 0 chr21 35275381 35275484 -9632086 + U6 snRNA snRNA 2 104 -3 1187 156 4 44 chr21 35275941 35276166 -9631404 + AluJo SINE Alu 86 301 -11 10868 172 26 10 chr21 35276387 35279908 -9627662 + L1PBa LINE L1 6 3468 -3394 189 0 0 0 chr21 35279908 35279929 -9627641 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 10868 172 26 10 chr21 35279929 35280641 -9626929 + L1PBa LINE L1 3468 4167 -2695 2143 120 3 10 chr21 35280641 35280942 -9626628 + AluSq SINE Alu 1 299 -14 10868 172 26 10 chr21 35280942 35281230 -9626340 + L1PBa LINE L1 4167 4449 -2413 2319 102 16 0 chr21 35281230 35281534 -9626036 + AluSg SINE Alu 1 309 -1 10868 172 26 10 chr21 35281534 35281870 -9625700 + L1PBa LINE L1 4449 5200 -1662 2223 112 0 3 chr21 35281874 35282192 -9625378 + AluSx SINE Alu 1 317 0 3823 95 13 43 chr21 35282192 35282792 -9624778 + L1PB1 LINE L1 5256 5837 -314 2306 99 0 7 chr21 35282796 35283119 -9624451 + AluSg SINE Alu 1 310 0 790 179 62 31 chr21 35283199 35283361 -9624209 - FRAM SINE Alu 0 40 1 581 266 110 11 chr21 35283619 35284170 -9623400 + L1ME4a LINE L1 5470 6113 -8 22 35 0 0 chr21 35284176 35284205 -9623365 + AT_rich Low_complexity Low_complexity 1 29 0 1750 88 0 0 chr21 35284365 35284582 -9622988 - AluSq SINE Alu -14 299 83 2155 117 52 23 chr21 35286255 35286598 -9620972 + THE1B LTR MaLR 1 353 -11 21 0 0 0 chr21 35286808 35286829 -9620741 + AT_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr21 35287073 35287106 -9620464 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1565 89 0 0 chr21 35287241 35287432 -9620138 - AluSg SINE Alu -119 191 1 246 81 0 27 chr21 35287432 35287462 -9620108 + THE1B LTR MaLR 387 417 -11 698 263 60 9 chr21 35287553 35287770 -9619800 + MLT1D LTR MaLR 278 505 0 487 272 54 16 chr21 35287843 35288078 -9619492 - MIR3 SINE MIR 0 262 8 341 265 51 0 chr21 35288302 35288400 -9619170 - MLT1J LTR MaLR -408 103 1 1883 144 55 33 chr21 35288969 35289336 -9618234 - THE1C LTR MaLR 0 375 1 321 282 63 35 chr21 35289339 35289481 -9618089 + L1ME LINE L1 5608 5753 -368 2378 87 3 0 chr21 35289580 35289878 -9617692 - AluSp SINE Alu -14 299 1 236 162 29 88 chr21 35290297 35290365 -9617205 + L1P3 LINE L1 469 532 -5343 24 0 0 0 chr21 35290891 35290915 -9616655 + AT_rich Low_complexity Low_complexity 1 24 0 1132 160 61 38 chr21 35291708 35291921 -9615649 + AluJo SINE Alu 86 303 -9 232 304 29 0 chr21 35291923 35291992 -9615578 - LTR16A1 LTR ERVL -2 455 385 284 240 150 0 chr21 35292338 35292438 -9615132 + MER112 DNA MER1_type 88 202 -58 1648 146 92 16 chr21 35292439 35292755 -9614815 + Charlie1b DNA MER1_type 1 340 -183 350 171 238 43 chr21 35292845 35293009 -9614561 + Charlie1b DNA MER1_type 327 522 -1 412 273 23 16 chr21 35293431 35293559 -9614011 + MER5B DNA MER1_type 2 130 -48 1544 226 34 29 chr21 35293564 35293975 -9613595 - L1ME3 LINE L1 -2 6160 5748 2194 113 0 41 chr21 35293998 35294316 -9613254 - AluSx SINE Alu -7 305 1 515 268 85 73 chr21 35294461 35295036 -9612534 + L2 LINE L2 2657 3300 -13 1465 91 0 29 chr21 35295752 35295989 -9611581 + AluY SINE Alu 106 311 0 22 0 0 0 chr21 35296690 35296712 -9610858 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr21 35296823 35296867 -9610703 + (TG)n Simple_repeat Simple_repeat 2 45 0 1095 129 0 0 chr21 35296867 35297014 -9610556 - AluSq SINE Alu -22 291 145 821 258 140 34 chr21 35297322 35297857 -9609713 - HAL1 LINE L1 0 2507 1916 1005 191 77 0 chr21 35297862 35298056 -9609514 - AluJo SINE Alu -14 298 90 1978 271 105 39 chr21 35298139 35299243 -9608327 - HAL1 LINE L1 -1326 1181 5 386 278 97 14 chr21 35299986 35300130 -9607440 - MIR SINE MIR -19 243 88 197 407 0 0 chr21 35300213 35300299 -9607271 - L2 LINE L2 -50 3222 3137 413 224 108 65 chr21 35300377 35300591 -9606979 + L2 LINE L2 3077 3299 -14 2145 81 25 0 chr21 35300626 35300911 -9606659 - AluSp SINE Alu -21 292 1 336 267 10 10 chr21 35301013 35301114 -9606456 - MIR SINE MIR -3 259 159 354 275 92 23 chr21 35301126 35301257 -9606313 + MIR SINE MIR 37 176 -86 339 246 45 55 chr21 35301280 35301390 -9606180 - MIR SINE MIR -106 156 48 211 221 59 20 chr21 35301616 35301700 -9605870 + MIR SINE MIR 76 157 -51 233 275 111 58 chr21 35301835 35302042 -9605528 + L2 LINE L2 2962 3179 -93 198 71 0 0 chr21 35303141 35303169 -9604401 + (CGG)n Simple_repeat Simple_repeat 1 28 0 1130 280 36 40 chr21 35304949 35305449 -9602121 - L1ME3A LINE L1 -209 5961 5464 570 254 62 5 chr21 35306034 35306227 -9601343 - L1ME3A LINE L1 -254 5899 5696 795 250 65 60 chr21 35306265 35306546 -9601024 + Charlie2 DNA MER1_type 4 289 -2493 2322 77 30 0 chr21 35306546 35306846 -9600724 - AluSq SINE Alu -4 309 1 795 250 65 60 chr21 35306846 35306900 -9600670 + Charlie2 DNA MER1_type 289 341 -2441 297 196 216 29 chr21 35306910 35307012 -9600558 + Charlie2 DNA MER1_type 2230 2350 -512 * 623 200 53 32 chr21 35307009 35307199 -9600371 + Charlie2 DNA MER1_type 2667 2860 -2 906 232 39 86 chr21 35307275 35307637 -9599933 - L1ME3A LINE L1 -529 5624 5280 2531 273 139 42 chr21 35307655 35309369 -9598201 - L1ME3A LINE L1 -905 5224 3134 1983 93 16 39 chr21 35309369 35309680 -9597890 - AluSx SINE Alu 0 312 9 2531 273 139 42 chr21 35309680 35310767 -9596803 - L1ME3A LINE L1 -2995 3134 2153 847 261 66 72 chr21 35310822 35310970 -9596600 - L1MEd LINE L1 -4738 1572 1425 2448 92 0 0 chr21 35310970 35311276 -9596294 - AluSc SINE Alu -3 306 1 847 261 66 72 chr21 35311276 35311726 -9595844 - L1MEd LINE L1 -4885 1425 924 2523 53 0 3 chr21 35311726 35312025 -9595545 - AluY SINE Alu -13 298 1 847 261 66 72 chr21 35312025 35312335 -9595235 - L1MEd LINE L1 -5386 924 614 27 81 0 0 chr21 35312665 35312727 -9594843 + AT_rich Low_complexity Low_complexity 1 62 0 328 255 0 20 chr21 35312746 35312844 -9594726 - MER113 DNA MER1_type? -365 156 61 354 308 134 65 chr21 35313142 35313724 -9593846 - L2 LINE L2 -493 2821 2200 264 262 65 28 chr21 35313869 35313976 -9593594 - MER113 DNA MER1_type? -410 111 1 407 243 215 20 chr21 35313980 35314227 -9593343 - L2 LINE L2 -1108 2206 1912 960 207 89 29 chr21 35314297 35314543 -9593027 - MIR SINE MIR 0 262 2 2406 76 0 7 chr21 35314570 35314893 -9592677 + AluSg SINE Alu 1 310 0 238 339 0 0 chr21 35315248 35315313 -9592257 - L2 LINE L2 -1405 1909 1845 470 252 112 23 chr21 35315727 35315941 -9591629 + MIR SINE MIR 3 235 -27 264 180 0 20 chr21 35316743 35316793 -9590777 - L2 LINE L2 -1 3312 3264 21 36 0 0 chr21 35318021 35318049 -9589521 + AT_rich Low_complexity Low_complexity 1 28 0 2021 98 0 11 chr21 35319381 35319658 -9587912 - AluSx SINE Alu -25 287 14 1399 124 0 5 chr21 35319662 35319856 -9587714 + AluSg/x SINE Alu 104 296 -16 2167 105 0 7 chr21 35321414 35321739 -9585831 - AluY SINE Alu 0 311 1 236 312 41 72 chr21 35322359 35322544 -9585026 - MIR SINE MIR -62 146 3 24 32 0 0 chr21 35322760 35322791 -9584779 + AT_rich Low_complexity Low_complexity 1 31 0 1174 137 87 27 chr21 35322879 35322963 -9584607 + MER46A DNA MER2_type 4 82 -2649 2222 88 3 25 chr21 35322963 35323280 -9584290 + AluSq SINE Alu 2 311 -2 1174 137 87 27 chr21 35323280 35323414 -9584156 + MER46A DNA MER2_type 82 235 -1 21 0 0 0 chr21 35323972 35323993 -9583577 + AT_rich Low_complexity Low_complexity 1 21 0 1655 183 21 7 chr21 35324724 35325008 -9582562 + AluJo SINE Alu 1 288 -24 260 135 0 19 chr21 35325010 35325062 -9582508 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 263 152 29 chr21 35326161 35326332 -9581238 - MIR SINE MIR -51 211 20 415 303 35 27 chr21 35326703 35326904 -9580666 - MIR SINE MIR -17 245 7 435 199 23 23 chr21 35327770 35327901 -9579669 - L1ME4a LINE L1 -1 6120 5990 807 265 60 0 chr21 35329130 35329345 -9578225 - MIR SINE MIR -25 237 10 1009 224 198 34 chr21 35329407 35329908 -9577662 + L1ME4a LINE L1 5366 5948 -222 315 0 0 0 chr21 35331230 35331265 -9576305 + (TG)n Simple_repeat Simple_repeat 2 36 0 308 155 127 0 chr21 35331530 35331601 -9575969 - MER116 DNA Mariner 0 80 1 336 270 54 27 chr21 35331610 35331758 -9575812 - L1MC4a LINE L1 -1874 5934 5783 227 162 40 40 chr21 35331772 35331871 -9575699 + (TTATA)n Simple_repeat Simple_repeat 3 101 0 463 95 81 0 chr21 35332433 35332507 -9575063 - MADE1 DNA Mariner 0 80 1 2057 142 0 3 chr21 35332597 35332892 -9574678 + AluSx SINE Alu 1 294 -18 1064 310 114 33 chr21 35333608 35334190 -9573380 - L2 LINE L2 -346 2968 2312 1531 119 31 60 chr21 35334190 35334509 -9573061 + AluSx SINE Alu 1 310 -2 1064 310 114 33 chr21 35334509 35334659 -9572911 - L2 LINE L2 -1002 2312 2176 771 205 99 0 chr21 35334659 35334820 -9572750 - MER5B DNA MER1_type -1 177 1 476 293 210 11 chr21 35334825 35335187 -9572383 - L2 LINE L2 -1138 2176 1743 462 215 192 23 chr21 35335194 35335371 -9572199 - MLT1L LTR MaLR -56 559 353 1547 246 116 20 chr21 35335419 35336495 -9571075 - L1ME2 LINE L1 -18 6146 4917 1748 150 10 39 chr21 35336495 35336801 -9570769 + AluJb SINE Alu 1 297 -15 1547 246 116 20 chr21 35336801 35337048 -9570522 - L1ME2 LINE L1 -1247 4917 4695 191 273 133 80 chr21 35337129 35337378 -9570192 - L2 LINE L2 -2342 972 711 308 286 79 51 chr21 35337417 35337595 -9569975 - MIR SINE MIR -61 201 19 2241 104 0 3 chr21 35337706 35338003 -9569567 + AluSg SINE Alu 1 296 -14 391 167 40 71 chr21 35338034 35338160 -9569410 + L1ME4a LINE L1 5979 6100 -21 21 0 0 0 chr21 35338165 35338186 -9569384 + AT_rich Low_complexity Low_complexity 1 21 0 245 300 127 26 chr21 35338621 35338968 -9568602 + L1MC/D LINE L1 5007 5388 -758 41189 39 8 3 chr21 35338979 35345119 -9562451 + L1PA4 LINE L1 2 6168 0 336 283 86 35 chr21 35345169 35345367 -9562203 + L1MC/D LINE L1 5358 5565 -599 287 183 56 0 chr21 35345456 35345527 -9562043 + L1MC/D LINE L1 5681 5755 -2053 1097 283 46 47 chr21 35345560 35346100 -9561470 + L2 LINE L2 2777 3311 -2 27 0 0 0 chr21 35346403 35346430 -9561140 + AT_rich Low_complexity Low_complexity 1 27 0 1793 142 30 17 chr21 35346444 35346746 -9560824 + AluSx SINE Alu 2 307 -5 24 67 0 0 chr21 35346936 35346981 -9560589 + AT_rich Low_complexity Low_complexity 1 45 0 295 291 26 26 chr21 35347032 35347149 -9560421 - MER5A DNA MER1_type -28 161 45 395 294 28 0 chr21 35347163 35347272 -9560298 - MIR3 SINE MIR -35 173 62 194 234 188 16 chr21 35347347 35347411 -9560159 + L2 LINE L2 3239 3313 0 1252 174 73 5 chr21 35347536 35347755 -9559815 + AluJo SINE Alu 15 248 -64 246 62 0 0 chr21 35347755 35347787 -9559783 + (A)n Simple_repeat Simple_repeat 1 32 0 637 238 113 5 chr21 35348472 35348657 -9558913 - MLT1K LTR MaLR -8 580 376 3713 216 68 18 chr21 35348683 35349747 -9557823 - L1MEc LINE L1 -5243 1153 37 361 0 41 0 chr21 35352322 35352371 -9555199 + (TA)n Simple_repeat Simple_repeat 2 52 0 300 42 0 62 chr21 35353293 35353341 -9554229 - MADE1 DNA Mariner -35 45 1 2055 112 0 32 chr21 35353651 35353963 -9553607 - AluSx SINE Alu -10 302 1 2200 117 3 3 chr21 35354024 35354333 -9553237 - AluSx SINE Alu -3 309 1 33 43 0 0 chr21 35355526 35355573 -9551997 + AT_rich Low_complexity Low_complexity 1 47 0 220 300 50 0 chr21 35355724 35355784 -9551786 - L2 LINE L2 -14 3258 3196 328 190 155 34 chr21 35356391 35356557 -9551013 - MER106B DNA MER1_type -37 199 7 1707 183 6 42 chr21 35356562 35356765 -9550805 - MLT1A1 LTR MaLR -17 348 162 2189 136 0 0 chr21 35356765 35357075 -9550495 - AluSx SINE Alu -2 310 1 1707 183 6 42 chr21 35357075 35357232 -9550338 - MLT1A1 LTR MaLR -203 162 1 242 188 0 113 chr21 35357925 35358005 -9549565 - MIR3 SINE MIR -53 155 85 28 29 0 0 chr21 35358728 35358763 -9548807 + AT_rich Low_complexity Low_complexity 1 35 0 1494 173 3 50 chr21 35359554 35359854 -9547716 - AluJo SINE Alu -13 299 14 25 0 0 0 chr21 35360309 35360334 -9547236 + AT_rich Low_complexity Low_complexity 1 25 0 283 317 58 0 chr21 35360379 35360483 -9547087 + MIR SINE MIR 153 262 0 223 304 14 0 chr21 35360662 35360731 -9546839 + CT-rich Low_complexity Low_complexity 2 71 0 225 254 0 0 chr21 35360845 35360904 -9546666 - L1MC/D LINE L1 -2175 5633 5575 1753 229 73 72 chr21 35360975 35361714 -9545856 + MER21B LTR ERV1 15 754 -109 2139 101 63 0 chr21 35362248 35362534 -9545036 - AluSx SINE Alu -8 304 1 646 152 98 68 chr21 35362791 35362923 -9544647 - AluJo SINE Alu -176 136 1 491 192 96 0 chr21 35363687 35363791 -9543779 + FLAM_A SINE Alu 1 114 -19 2147 93 7 7 chr21 35364091 35364381 -9543189 + AluSc SINE Alu 1 290 -19 12600 111 44 5 chr21 35365735 35367834 -9539736 + Tigger1 DNA MER2_type 1 2176 -242 898 54 8 31 chr21 35367834 35367963 -9539607 + L1PA7 LINE L1 6026 6151 -3 12600 111 44 5 chr21 35367963 35368215 -9539355 + Tigger1 DNA MER2_type 2176 2417 -1 24 0 0 0 chr21 35370380 35370404 -9537166 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 35370923 35370954 -9536616 + AT_rich Low_complexity Low_complexity 1 31 0 2030 127 7 3 chr21 35371412 35371696 -9535874 + AluSx SINE Alu 3 287 -25 13390 39 9 7 chr21 35371707 35374178 -9533392 + L1PA5 LINE L1 3672 6141 -13 740 304 49 12 chr21 35374725 35374968 -9532602 - MIR SINE MIR -8 254 3 3203 143 97 116 chr21 35375210 35375534 -9532036 + L1MB7 LINE L1 5276 5605 -579 2168 150 102 2 chr21 35375534 35375927 -9531643 - MSTB1 LTR MaLR 0 432 1 3203 143 97 116 chr21 35375927 35376091 -9531479 + L1MB7 LINE L1 5605 5771 -413 571 156 0 0 chr21 35376091 35376181 -9531389 + AluJb SINE Alu 202 291 -21 1894 144 35 0 chr21 35376182 35376466 -9531104 + AluJb SINE Alu 1 294 -18 3203 143 97 116 chr21 35376466 35376804 -9530766 + L1MB7 LINE L1 5770 6176 -8 2260 89 10 3 chr21 35377667 35377960 -9529610 - AluSc SINE Alu -14 295 1 24 53 0 0 chr21 35378672 35378710 -9528860 + AT_rich Low_complexity Low_complexity 1 38 0 801 192 26 19 chr21 35378767 35378923 -9528647 - FRAM SINE Alu -9 157 1 365 288 38 95 chr21 35379501 35379817 -9527753 - MLT1I LTR MaLR -18 391 94 2473 47 27 3 chr21 35382316 35382615 -9524955 - AluY SINE Alu -5 306 1 544 161 18 54 chr21 35383356 35383468 -9524102 + FLAM_A SINE Alu 26 133 -9 2319 57 0 0 chr21 35384625 35384933 -9522637 - AluY SINE Alu 0 308 1 207 162 0 0 chr21 35385220 35385257 -9522313 + GA-rich Low_complexity Low_complexity 4 40 0 1790 174 3 3 chr21 35385977 35386275 -9521295 - AluJo SINE Alu -14 298 1 210 359 49 14 chr21 35387655 35387797 -9519773 + MIR3 SINE MIR 62 208 0 238 366 127 29 chr21 35388522 35388940 -9518630 + L2 LINE L2 2250 2708 -606 321 279 101 80 chr21 35389039 35389437 -9518133 + L2 LINE L2 2866 3271 -1 22 0 0 0 chr21 35390409 35390431 -9517139 + AT_rich Low_complexity Low_complexity 1 22 0 1659 165 57 4 chr21 35391216 35391495 -9516075 - AluJo SINE Alu -13 299 6 260 200 0 0 chr21 35392228 35392278 -9515292 - L2 LINE L2 -3 3310 3261 2237 138 34 3 chr21 35392664 35393018 -9514552 - MLT1A1 LTR MaLR 0 365 1 869 237 32 40 chr21 35393018 35393260 -9514310 - MIR SINE MIR -9 253 12 2188 111 3 0 chr21 35393300 35393589 -9513981 - AluSp SINE Alu -23 290 1 2139 121 3 0 chr21 35394280 35394577 -9512993 - AluSx SINE Alu -14 298 1 213 132 19 38 chr21 35397788 35397841 -9509729 + T-rich Low_complexity Low_complexity 2 53 0 390 296 66 19 chr21 35397976 35398189 -9509381 + L1ME LINE L1 3826 4048 -2098 390 296 216 14 chr21 35398191 35398607 -9508963 + L1ME LINE L1 4099 4598 -1548 1596 203 87 52 chr21 35398626 35399109 -9508461 - MLT1F LTR MaLR -3 539 40 1556 88 10 0 chr21 35399289 35399483 -9508087 + AluSg/x SINE Alu 88 283 -29 2221 105 7 3 chr21 35399507 35399811 -9507759 + AluSg SINE Alu 1 305 -5 256 314 8 7 chr21 35399859 35400009 -9507561 + L1P LINE L1 4918 5069 -1077 266 193 24 36 chr21 35400042 35400125 -9507445 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 352 253 42 30 chr21 35400180 35400346 -9507224 + L1ME LINE L1 5254 5421 -2387 364 225 42 0 chr21 35400469 35400574 -9506996 + L1ME LINE L1 5709 5819 -302 486 277 89 30 chr21 35400683 35401087 -9506483 - L1ME4a LINE L1 -2 6119 5692 266 287 169 0 chr21 35401293 35401429 -9506141 + MIR SINE MIR 49 207 -55 791 249 105 4 chr21 35403004 35403233 -9504337 + MIR SINE MIR 2 253 -9 260 346 120 0 chr21 35404631 35404764 -9502806 + MIR SINE MIR 34 182 -80 2415 73 0 29 chr21 35404913 35405226 -9502344 + AluY SINE Alu 1 304 -7 2281 102 0 29 chr21 35405245 35405560 -9502010 + AluSq SINE Alu 1 306 -7 1996 101 42 3 chr21 35405711 35405999 -9501571 - AluSx SINE Alu -13 299 1 728 166 0 66 chr21 35406141 35406322 -9501248 - L1MB7 LINE L1 -20 6164 5996 449 256 96 41 chr21 35406565 35406784 -9500786 - MIR SINE MIR -8 254 24 444 267 91 52 chr21 35407068 35407375 -9500195 - MLT1H LTR MaLR -196 353 35 3856 172 47 58 chr21 35407742 35408617 -9498953 - L1MB8 LINE L1 0 6178 5295 1878 175 0 13 chr21 35408617 35408926 -9498644 + AluJo SINE Alu 1 305 -7 1718 171 0 48 chr21 35408929 35409239 -9498331 + AluJb SINE Alu 1 295 -17 3856 172 47 58 chr21 35409239 35409485 -9498085 - L1MB8 LINE L1 -885 5293 5071 185 329 74 101 chr21 35409550 35409614 -9497956 + L2 LINE L2 3119 3183 -89 558 217 58 0 chr21 35409614 35409734 -9497836 - FLAM_A SINE Alu -3 130 4 185 329 74 101 chr21 35409734 35409818 -9497752 + L2 LINE L2 3183 3263 -9 194 275 0 29 chr21 35409963 35410032 -9497538 - L2 LINE L2 0 3313 3247 3235 11 0 0 chr21 35410345 35410709 -9496861 + L1PA2 LINE L1 5788 6151 -4 30 27 0 0 chr21 35410782 35410819 -9496751 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr21 35412875 35412900 -9494670 + AT_rich Low_complexity Low_complexity 1 25 0 286 265 41 51 chr21 35413140 35413238 -9494332 + MIR3 SINE MIR 111 207 -1 605 256 78 74 chr21 35413420 35413841 -9493729 - MLT1H LTR MaLR -12 537 115 2236 105 0 44 chr21 35414393 35414708 -9492862 - AluSq SINE Alu -12 301 1 207 255 0 0 chr21 35415192 35415239 -9492331 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr21 35415522 35415545 -9492025 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr21 35415595 35415625 -9491945 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr21 35415724 35415760 -9491810 + AT_rich Low_complexity Low_complexity 1 36 0 42 36 0 0 chr21 35415859 35415915 -9491655 + AT_rich Low_complexity Low_complexity 1 56 0 1799 157 52 0 chr21 35416378 35416665 -9490905 - AluJb SINE Alu -10 302 1 368 202 137 32 chr21 35418623 35418747 -9488823 - L1ME4a LINE L1 0 6121 5985 316 333 36 22 chr21 35418787 35419012 -9488558 - L1ME4a LINE L1 -239 5882 5655 2110 98 3 3 chr21 35419185 35419482 -9488088 - AluSg SINE Alu -13 297 1 1986 116 3 0 chr21 35419482 35419767 -9487803 - AluY SINE Alu -8 303 18 334 106 50 16 chr21 35419767 35419840 -9487730 - Alu SINE Alu -256 46 1 2189 86 20 0 chr21 35420069 35420372 -9487198 - AluSg SINE Alu -1 309 1 22 0 0 0 chr21 35421074 35421096 -9486474 + AT_rich Low_complexity Low_complexity 1 22 0 2065 93 3 35 chr21 35421517 35421827 -9485743 - AluSp SINE Alu -13 300 1 297 0 0 0 chr21 35422430 35422463 -9485107 + (TG)n Simple_repeat Simple_repeat 2 34 0 2821 182 25 6 chr21 35424127 35424638 -9482932 + Tigger7 DNA MER2_type 1 521 -1966 453 211 11 11 chr21 35424639 35424729 -9482841 + Tigger7 DNA MER2_type 2401 2490 -1 181 315 43 22 chr21 35424978 35425070 -9482500 - L2 LINE L2 -914 2400 2307 2118 129 0 0 chr21 35426165 35426475 -9481095 - AluSx SINE Alu -2 310 1 993 106 344 9 chr21 35427123 35427341 -9480229 + AluSg1 SINE Alu 4 294 -15 22 70 0 0 chr21 35427664 35427707 -9479863 + AT_rich Low_complexity Low_complexity 1 43 0 286 289 164 30 chr21 35429557 35429820 -9477750 - L1ME4a LINE L1 -54 6067 5770 22 56 0 0 chr21 35432023 35432059 -9475511 + AT_rich Low_complexity Low_complexity 1 36 0 2425 57 7 0 chr21 35433602 35433903 -9473667 + AluY SINE Alu 1 303 -8 1915 150 31 21 chr21 35434034 35434360 -9473210 + MER44D DNA MER2_type 1 599 -10 198 0 0 0 chr21 35434361 35434383 -9473187 + (TG)n Simple_repeat Simple_repeat 1 22 0 191 210 16 65 chr21 35434659 35434721 -9472849 + MIR SINE MIR 174 232 -30 2049 128 0 3 chr21 35435211 35435509 -9472061 - AluSx SINE Alu -15 297 1 1705 168 13 3 chr21 35435701 35435999 -9471571 + AluJb SINE Alu 1 301 -11 874 252 115 21 chr21 35435999 35436459 -9471111 + L1ME LINE L1 4929 5432 -738 1801 128 197 8 chr21 35436472 35436832 -9470738 + MSTA LTR MaLR 1 428 0 629 94 0 0 chr21 35436944 35437029 -9470541 + AluJ/FRAM SINE Alu 216 300 -12 766 170 111 0 chr21 35437083 35437236 -9470334 - MER63 DNA MER1_type -201 861 692 181 167 0 0 chr21 35439474 35439504 -9468066 + L2 LINE L2 3223 3252 -20 488 306 34 29 chr21 35439668 35439876 -9467694 - MIR SINE MIR -37 225 19 2655 138 0 7 chr21 35440040 35440446 -9467124 - MER66B LTR ERV1 0 486 84 608 153 25 94 chr21 35440454 35440656 -9466914 - L1M4 LINE L1 -871 5275 5088 661 193 9 0 chr21 35440666 35440775 -9466795 + FLAM_C SINE Alu 2 111 -32 398 136 48 19 chr21 35440796 35440899 -9466671 + GA-rich Low_complexity Low_complexity 4 109 0 425 228 102 36 chr21 35440910 35441077 -9466493 - L1M4 LINE L1 -1053 5093 4916 3373 205 62 36 chr21 35441081 35442056 -9465514 - L1M4 LINE L1 -1406 4740 3741 2692 123 27 33 chr21 35442065 35442473 -9465097 - L1MA7 LINE L1 -2 6289 5883 1529 102 189 19 chr21 35442473 35442737 -9464833 - AluSg1 SINE Alu 0 309 1 2692 123 27 33 chr21 35442737 35442807 -9464763 - L1MA7 LINE L1 -408 5883 5814 417 125 0 52 chr21 35442831 35442927 -9464643 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 2237 96 0 3 chr21 35442932 35443234 -9464336 - AluSg1 SINE Alu -8 301 1 901 139 1 28 chr21 35443234 35443398 -9464172 - L1MA7 LINE L1 -323 5828 5673 434 66 33 0 chr21 35443408 35443469 -9464101 - L1MA7 LINE L1 -816 5475 5413 850 150 0 15 chr21 35443469 35443602 -9463968 + FLAM_C SINE Alu 1 131 -2 1272 94 6 0 chr21 35443617 35443788 -9463782 + AluSp SINE Alu 1 172 -141 375 202 73 0 chr21 35443815 35443923 -9463647 - L1M4 LINE L1 -2400 3746 3631 474 188 0 0 chr21 35443933 35444029 -9463541 + C-rich Low_complexity Low_complexity 2 97 0 2147 106 0 7 chr21 35444041 35444342 -9463228 + AluSg SINE Alu 1 299 -11 1434 133 98 42 chr21 35444342 35444605 -9462965 - AluJb SINE Alu -31 281 3 397 238 10 0 chr21 35444609 35444710 -9462860 - L1M4 LINE L1 -2524 3622 3521 1115 205 47 22 chr21 35444712 35444990 -9462580 - L1M4 LINE L1 -3187 2959 2675 551 171 0 0 chr21 35444990 35445078 -9462492 + AluS SINE Alu 1 88 -225 2013 100 52 3 chr21 35445207 35445497 -9462073 - AluSx SINE Alu -8 304 1 1961 160 0 0 chr21 35445543 35445856 -9461714 + 7SLRNA srpRNA srpRNA 1 313 -7 464 154 192 112 chr21 35445867 35445969 -9461601 - MER33 DNA MER1_type -2330 255 163 2027 99 0 34 chr21 35445969 35446290 -9461280 - AluSq SINE Alu 0 311 1 464 154 192 112 chr21 35446290 35446399 -9461171 - MER33 DNA MER1_type -2422 163 25 935 229 29 87 chr21 35446433 35446813 -9460757 + MER20B DNA MER1_type 246 603 -180 1215 150 5 5 chr21 35446815 35447028 -9460542 - AluSg/x SINE Alu -16 294 82 2249 62 6 53 chr21 35447036 35447358 -9460212 - AluY SINE Alu -4 307 1 1971 133 0 19 chr21 35447502 35447811 -9459759 - AluSx SINE Alu -9 303 1 436 234 106 14 chr21 35449283 35449424 -9458146 + MIR SINE MIR 79 232 -30 4151 93 37 3 chr21 35449597 35450185 -9457385 + MER51A LTR ERV1 1 608 -26 221 250 204 0 chr21 35450476 35450564 -9457006 + MIR SINE MIR 147 252 -10 7785 23 35 5 chr21 35451722 35453040 -9454530 - L1PA3 LINE L1 0 6155 4820 1610 137 19 4 chr21 35454189 35454452 -9453118 + AluJb SINE Alu 2 268 -44 2019 101 35 0 chr21 35454642 35454930 -9452640 + AluSg SINE Alu 1 298 -12 263 185 31 0 chr21 35456907 35456972 -9450598 + L1ME LINE L1 5831 5897 -224 758 139 97 35 chr21 35457932 35458076 -9449494 - FRAM SINE Alu -13 153 1 1404 170 57 14 chr21 35458688 35458971 -9448599 + AluJo SINE Alu 1 295 -17 1346 91 115 14 chr21 35459135 35459344 -9448226 + MER30 DNA MER1_type 1 230 0 1041 186 141 45 chr21 35459426 35459717 -9447853 - MER33 DNA MER1_type -5 319 1 1550 145 56 30 chr21 35459802 35460105 -9447465 - AluJb SINE Alu -1 311 1 385 319 43 7 chr21 35461077 35461215 -9446355 + HAL1 LINE L1 810 952 -1555 375 294 171 18 chr21 35462478 35462648 -9444922 + MIR3 SINE MIR 3 198 -10 656 197 177 0 chr21 35463104 35463251 -9444319 + LTR40a LTR ERVL 331 503 -16 345 315 97 6 chr21 35463676 35463892 -9443678 + MIR SINE MIR 4 236 -26 263 218 0 0 chr21 35464097 35464152 -9443418 - L1MC5 LINE L1 -95 7866 7812 2069 102 0 16 chr21 35464782 35464949 -9442621 - AluSx SINE Alu -13 299 138 2127 91 31 0 chr21 35464949 35465236 -9442334 - AluSq SINE Alu -17 296 1 2069 102 0 16 chr21 35465236 35465372 -9442198 - AluSx SINE Alu -174 138 1 238 115 77 0 chr21 35465755 35465807 -9441763 + L1MC4 LINE L1 6648 6703 -1339 32 0 0 0 chr21 35465807 35465839 -9441731 + AT_rich Low_complexity Low_complexity 1 32 0 786 189 0 0 chr21 35465839 35465966 -9441604 - FLAM_A SINE Alu -6 127 1 199 228 53 0 chr21 35466203 35466260 -9441310 + MIR SINE MIR 82 141 -67 189 107 0 0 chr21 35466290 35466318 -9441252 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 323 275 28 18 chr21 35466451 35466560 -9441010 + L1MC4 LINE L1 7791 7900 -142 837 158 0 0 chr21 35466880 35467019 -9440551 - FLAM_C SINE Alu -4 139 1 2056 106 24 3 chr21 35469542 35469834 -9437736 - AluSq SINE Alu -13 300 3 1944 119 0 14 chr21 35470068 35470363 -9437207 - AluJo SINE Alu -21 291 1 1770 174 0 13 chr21 35471474 35471784 -9435786 + AluJo SINE Alu 1 306 -6 1580 127 69 25 chr21 35472266 35472541 -9435029 + AluJb SINE Alu 13 299 -13 1592 220 42 16 chr21 35473485 35473916 -9433654 + LTR56 LTR ERV1 4 445 0 1668 87 70 8 chr21 35474216 35474458 -9433112 - AluSx SINE Alu -41 271 15 326 287 201 50 chr21 35475166 35475645 -9431925 + L2 LINE L2 2709 3312 -1 350 263 140 58 chr21 35475692 35476000 -9431570 + L1M2a LINE L1 1897 2229 -4939 531 280 100 69 chr21 35476143 35476682 -9430888 + HAL1b LINE L1 336 891 -457 1886 135 18 0 chr21 35476712 35476993 -9430577 - AluJo SINE Alu -26 286 1 741 195 116 21 chr21 35476993 35477183 -9430387 - MER3 DNA MER1_type -1 208 1 262 233 14 82 chr21 35477217 35477363 -9430207 + HAL1b LINE L1 777 912 -436 638 310 108 44 chr21 35477514 35477827 -9429743 + L1MC/D LINE L1 2213 2504 -3711 987 121 0 0 chr21 35477827 35477959 -9429611 + AluJo SINE Alu 1 132 -170 638 310 108 44 chr21 35477959 35478261 -9429309 + L1MC/D LINE L1 2504 2824 -3391 421 311 156 61 chr21 35478300 35478724 -9428846 + L1MC/D LINE L1 3300 3763 -2452 1107 274 96 62 chr21 35478737 35479960 -9427610 + L1MC/D LINE L1 3757 5030 -1185 2108 121 0 3 chr21 35479960 35480258 -9427312 + AluSx SINE Alu 1 297 -15 1107 274 96 62 chr21 35480258 35480366 -9427204 + L1MC/D LINE L1 5030 5133 -1082 452 285 63 77 chr21 35480464 35480559 -9427011 + L1MC/D LINE L1 5278 5373 -860 2245 88 3 0 chr21 35480559 35480855 -9426715 + AluSg SINE Alu 1 297 -13 452 285 63 77 chr21 35480855 35481260 -9426310 + L1MC/D LINE L1 5373 5500 -733 216 0 0 0 chr21 35482472 35482496 -9425074 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1221 199 210 37 chr21 35482508 35482966 -9424604 + L1ME1 LINE L1 5618 6154 -12 384 295 54 0 chr21 35483171 35483283 -9424287 - L2 LINE L2 -6 3307 3190 1395 170 9 4 chr21 35483661 35483890 -9423680 + MER46A DNA MER2_type 3 232 -4 791 191 6 48 chr21 35484292 35484460 -9423110 + AluJo SINE Alu 141 301 -1 1977 125 26 0 chr21 35484467 35484772 -9422798 + AluSq SINE Alu 1 313 0 2013 99 67 0 chr21 35485790 35486074 -9421496 - AluSp SINE Alu -10 303 1 25 51 0 0 chr21 35486338 35486377 -9421193 + AT_rich Low_complexity Low_complexity 1 39 0 1731 124 15 11 chr21 35486830 35487103 -9420467 + AluJb SINE Alu 39 312 0 432 302 45 25 chr21 35488149 35488351 -9419219 + LTR51 LTR ERV1 228 433 -238 328 216 113 21 chr21 35489907 35490004 -9417566 - MIR SINE MIR -49 213 108 227 276 103 11 chr21 35490072 35490159 -9417411 + MIR SINE MIR 94 188 -74 774 144 0 50 chr21 35490338 35490477 -9417093 + FLAM_C SINE Alu 2 133 -10 270 263 75 0 chr21 35490950 35491030 -9416540 - L2 LINE L2 0 3313 3228 929 196 29 10 chr21 35491166 35491370 -9416200 - L1 LINE L1 -949 5197 4990 22 0 0 0 chr21 35491490 35491512 -9416058 + AT_rich Low_complexity Low_complexity 1 22 0 341 184 83 28 chr21 35491557 35491666 -9415904 + L1M4 LINE L1 2859 2973 -3173 327 296 111 25 chr21 35491877 35492039 -9415531 + L1M4 LINE L1 2943 3118 -3028 2148 108 10 0 chr21 35492707 35493003 -9414567 - AluSx SINE Alu -13 299 1 263 284 12 124 chr21 35493348 35493517 -9414053 + MIR SINE MIR 2 151 -111 283 163 93 12 chr21 35494124 35494210 -9413360 - MER113 DNA MER1_type? -323 198 106 365 285 129 43 chr21 35494554 35494607 -9412963 - L1MC4 LINE L1 0 8042 7995 3242 157 56 9 chr21 35494607 35495252 -9412318 + L1MB7 LINE L1 5510 6184 0 365 285 129 43 chr21 35495252 35495500 -9412070 - L1MC4 LINE L1 -47 7995 7715 1224 240 42 72 chr21 35495503 35495844 -9411726 - L1MC4 LINE L1 -387 7655 7330 2300 78 0 0 chr21 35495844 35496150 -9411420 - AluSx SINE Alu 0 312 7 1224 240 42 72 chr21 35496150 35496279 -9411291 - L1MC4 LINE L1 -712 7330 7199 324 213 25 62 chr21 35496393 35496473 -9411097 + MER5B DNA MER1_type 95 171 -7 418 227 154 0 chr21 35496479 35496589 -9410981 - MIR3 SINE MIR -24 184 58 200 83 0 28 chr21 35497137 35497173 -9410397 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 2200 90 10 0 chr21 35498901 35499201 -9408369 - AluSg SINE Alu -7 303 1 821 299 24 16 chr21 35500232 35500481 -9407089 + LTR16A LTR ERVL 22 272 -178 940 214 112 19 chr21 35500481 35500953 -9406617 - MLT1F1 LTR MaLR -1 566 2 366 198 33 50 chr21 35500964 35501085 -9406485 + LTR16A LTR ERVL 332 450 0 470 222 118 26 chr21 35501113 35501266 -9406304 - MIR SINE MIR -70 192 26 1713 199 75 29 chr21 35501506 35501731 -9405839 - MLT1C LTR MaLR -4 463 250 2063 117 3 7 chr21 35501731 35502030 -9405540 + AluJb SINE Alu 1 298 -14 1713 199 75 29 chr21 35502030 35502247 -9405323 - MLT1C LTR MaLR -217 250 1 244 241 17 0 chr21 35502251 35502309 -9405261 + MLT1A1 LTR MaLR 117 175 -190 845 211 81 5 chr21 35502347 35502532 -9405038 + MLT1A1 LTR MaLR 167 365 0 306 210 14 49 chr21 35502738 35502792 -9404778 + A-rich Low_complexity Low_complexity 6 60 -83 1918 143 0 13 chr21 35502792 35503107 -9404463 + AluSx SINE Alu 1 311 -1 306 210 14 49 chr21 35503107 35503195 -9404375 + A-rich Low_complexity Low_complexity 60 143 0 44 0 0 0 chr21 35503195 35503239 -9404331 + AT_rich Low_complexity Low_complexity 1 44 0 283 161 16 16 chr21 35503407 35503469 -9404101 + L1MC5 LINE L1 7742 7803 -158 429 174 28 14 chr21 35503469 35503613 -9403957 + GA-rich Low_complexity Low_complexity 2 147 0 243 271 17 8 chr21 35504429 35504547 -9403023 + L1 LINE L1 4311 4429 -1717 401 289 136 42 chr21 35504574 35504927 -9402643 + L1 LINE L1 4457 4842 -1304 2123 67 3 11 chr21 35504937 35505268 -9402302 - AluY SINE Alu 0 329 1 381 314 33 26 chr21 35505486 35505789 -9401781 + L1ME LINE L1 4400 4704 -1442 2040 113 7 0 chr21 35505897 35506189 -9401381 - AluSp SINE Alu -19 294 1 1585 159 13 36 chr21 35506222 35506523 -9401047 + AluJo SINE Alu 1 294 -18 605 233 116 39 chr21 35506708 35506940 -9400630 + MLT1H1 LTR MaLR 306 555 0 33 0 0 0 chr21 35507055 35507088 -9400482 + AT_rich Low_complexity Low_complexity 1 33 0 2244 97 0 3 chr21 35507184 35507495 -9400075 + AluSg SINE Alu 1 310 0 1860 136 51 0 chr21 35507532 35507827 -9399743 + AluJb SINE Alu 1 310 -2 2037 99 4 0 chr21 35507895 35508168 -9399402 + AluSp SINE Alu 2 275 -38 2068 204 121 27 chr21 35508267 35508869 -9398701 - MLT1E2 LTR MaLR 0 626 3 564 270 72 12 chr21 35508906 35509235 -9398335 + L1ME LINE L1 5324 5684 -437 2618 101 20 6 chr21 35509285 35509642 -9397928 + THE1B LTR MaLR 1 362 -2 245 268 98 8 chr21 35509652 35509775 -9397795 + L1ME LINE L1 5694 5827 -294 * 1704 193 123 47 chr21 35509764 35510293 -9397277 + L1M4 LINE L1 4465 5033 -1113 1627 118 104 35 chr21 35510295 35510584 -9396986 - AluSg1 SINE Alu 0 309 1 1494 186 3 49 chr21 35510763 35510994 -9396576 - AluJo SINE Alu 0 312 99 2256 79 3 0 chr21 35510994 35511286 -9396284 - AluY SINE Alu -18 293 1 1494 186 3 49 chr21 35511286 35511381 -9396189 - AluJo SINE Alu -213 99 1 1637 126 11 30 chr21 35512006 35512269 -9395301 + MER1A DNA MER1_type 44 301 -228 4647 119 161 80 chr21 35512272 35513683 -9393887 - pTR5 LTR ERV1 0 2438 753 1665 103 12 16 chr21 35513683 35513926 -9393644 + MER1A DNA MER1_type 288 529 0 2156 103 0 28 chr21 35514511 35514850 -9392720 - AluSx SINE Alu 0 330 1 1965 134 0 3 chr21 35515143 35515441 -9392129 + AluSx SINE Alu 1 297 -15 355 340 57 7 chr21 35515461 35515602 -9391968 - L2 LINE L2 -2 3311 3164 1283 249 36 47 chr21 35515876 35516168 -9391402 - MLT1C LTR MaLR 0 467 180 2150 105 0 3 chr21 35516168 35516473 -9391097 - AluSg SINE Alu -6 304 1 1283 249 36 47 chr21 35516473 35516646 -9390924 - MLT1C LTR MaLR -287 180 7 536 192 115 80 chr21 35516927 35517214 -9390356 + MSTD LTR MaLR 1 304 -61 1878 132 11 0 chr21 35517215 35517522 -9390048 - AluJo SINE Alu 0 310 1 969 237 71 101 chr21 35518353 35518412 -9389158 + MLT1J LTR MaLR 12 71 -440 2066 93 3 33 chr21 35518412 35518713 -9388857 - AluSq SINE Alu -21 292 1 969 237 71 101 chr21 35518713 35518866 -9388704 + MLT1J LTR MaLR 71 227 -284 2243 81 10 0 chr21 35518866 35519162 -9388408 + AluSx SINE Alu 3 301 -11 969 237 71 101 chr21 35519162 35519393 -9388177 + MLT1J LTR MaLR 227 438 -73 1864 212 29 62 chr21 35519393 35519912 -9387658 + MLT1D LTR MaLR 4 505 0 969 237 71 101 chr21 35519912 35519978 -9387592 + MLT1J LTR MaLR 438 504 -7 2429 71 0 0 chr21 35521007 35521302 -9386268 + AluY SINE Alu 1 295 -16 2041 231 81 17 chr21 35521302 35521435 -9386135 - MER77 LTR ERV1 -1 604 481 2427 94 0 0 chr21 35521435 35521742 -9385828 + AluSg SINE Alu 1 307 -3 2041 231 81 17 chr21 35521742 35522137 -9385433 - MER77 LTR ERV1 -124 481 42 574 225 143 4 chr21 35522272 35522587 -9384983 + MLT1J LTR MaLR 135 504 -7 2507 87 0 0 chr21 35523405 35523716 -9383854 - AluY SINE Alu 0 311 1 311 354 43 19 chr21 35524025 35524186 -9383384 - MIR3 SINE MIR -11 197 33 183 318 209 0 chr21 35524498 35524608 -9382962 + L2 LINE L2 3180 3312 -1 911 116 0 0 chr21 35525224 35525345 -9382225 + AluSq/x SINE Alu 1 121 -191 2352 109 0 0 chr21 35525419 35525731 -9381839 + AluSq SINE Alu 1 312 -1 952 230 35 96 chr21 35526057 35526462 -9381108 + L1MB7 LINE L1 5795 6174 -10 2389 103 0 6 chr21 35526470 35526781 -9380789 - AluSx SINE Alu -3 309 1 2387 93 6 0 chr21 35526816 35527127 -9380443 + AluSq SINE Alu 1 313 0 292 294 77 49 chr21 35527701 35527844 -9379726 - MER5A DNA MER1_type -1 188 42 1297 153 110 24 chr21 35528241 35528496 -9379074 + AluJo SINE Alu 11 287 -25 571 209 65 116 chr21 35529316 35529463 -9378107 + L1MC5 LINE L1 7633 7786 -175 2434 85 3 0 chr21 35529463 35529770 -9377800 + AluSc SINE Alu 1 308 -1 571 209 65 116 chr21 35529770 35529782 -9377788 + L1MC5 LINE L1 7786 7797 -164 2120 113 3 0 chr21 35529782 35530102 -9377468 + AluSx SINE Alu 1 321 0 571 209 65 116 chr21 35530102 35530232 -9377338 + L1MC5 LINE L1 7797 7909 -52 1972 142 3 19 chr21 35531180 35531498 -9376072 - AluSq SINE Alu 0 313 1 1690 169 43 4 chr21 35531805 35532083 -9375487 + AluJb SINE Alu 1 289 -23 2068 129 14 3 chr21 35532453 35532748 -9374822 - AluSx SINE Alu -14 298 1 2250 82 21 10 chr21 35533027 35533318 -9374252 + AluSc SINE Alu 1 294 -15 1498 176 7 54 chr21 35533336 35533660 -9373910 - AluJo SINE Alu 0 310 1 362 307 23 23 chr21 35533669 35533682 -9373888 - L1M1 LINE L1 -480 5822 5811 2199 101 0 0 chr21 35533682 35533959 -9373611 - AluSx SINE Alu -16 296 20 362 307 23 23 chr21 35533959 35534147 -9373423 - L1M1 LINE L1 -491 5811 5618 416 346 79 0 chr21 35534279 35534507 -9373063 - MERVL LTR ERVL -867 4618 4373 613 314 16 0 chr21 35534541 35534732 -9372838 - MERVL LTR ERVL -1399 4365 4172 1477 205 72 20 chr21 35534756 35535103 -9372467 + MLT1A1 LTR MaLR 1 365 0 654 222 31 13 chr21 35535218 35535390 -9372180 - L1MA10 LINE L1 -9 6155 5982 1800 131 0 4 chr21 35535557 35535816 -9371754 + AluJb SINE Alu 1 258 -54 3432 173 43 20 chr21 35535840 35536494 -9371076 - L1MB7 LINE L1 -26 6158 5490 1002 133 0 77 chr21 35536496 35536677 -9370893 - AluJb SINE Alu -5 307 141 2263 210 27 25 chr21 35536678 35538281 -9369289 - L1MB7 LINE L1 -671 5503 3713 896 144 0 0 chr21 35538293 35538418 -9369152 + FLAM_C SINE Alu 9 133 -10 528 16 0 0 chr21 35538418 35538479 -9369091 + (TA)n Simple_repeat Simple_repeat 1 61 0 336 278 83 59 chr21 35538913 35539201 -9368369 + L1MEd LINE L1 1251 1545 -5089 2263 103 0 3 chr21 35539228 35539551 -9368019 - AluSq SINE Alu 0 323 2 350 307 42 22 chr21 35539562 35539843 -9367727 + L1MEd LINE L1 1458 1889 -4834 7445 124 15 32 chr21 35539900 35540035 -9367535 - L1MA3 LINE L1 0 6305 6169 2379 96 0 0 chr21 35540035 35540336 -9367234 - AluSx SINE Alu -11 301 1 7445 124 15 32 chr21 35540336 35540423 -9367147 - L1MA3 LINE L1 -136 6169 6082 2344 85 3 0 chr21 35540423 35540716 -9366854 + AluSp SINE Alu 1 294 -19 7445 124 15 32 chr21 35540716 35541400 -9366170 - L1MA3 LINE L1 -223 6082 5387 2595 52 3 7 chr21 35541400 35541710 -9365860 + AluSc SINE Alu 1 309 0 7445 124 15 32 chr21 35541710 35543066 -9364504 - L1MA3 LINE L1 -918 5387 4083 2291 83 0 3 chr21 35543079 35543368 -9364202 - AluY SINE Alu -23 288 1 390 191 32 127 chr21 35543378 35543567 -9364003 + L1MEd LINE L1 1949 2119 -4706 2351 82 0 0 chr21 35543618 35543935 -9363635 + AluSg SINE Alu 1 317 0 313 273 70 42 chr21 35544140 35544283 -9363287 + L1MEd LINE L1 2461 2607 -4218 990 43 0 0 chr21 35544284 35544400 -9363170 + MER41A LTR ERV1 353 468 -86 534 264 80 22 chr21 35544403 35544710 -9362860 + L1MEd LINE L1 2608 2882 -3762 864 163 6 31 chr21 35544760 35544920 -9362650 + AluJb SINE Alu 137 292 -20 461 293 10 5 chr21 35544925 35545123 -9362447 + L1MEd LINE L1 2939 3137 -3507 * 5680 55 2 3 chr21 35545108 35546368 -9361202 + L1PA6 LINE L1 4697 5955 -199 1429 198 0 0 chr21 35546599 35546836 -9360734 - AluJo SINE Alu -75 237 1 323 262 56 16 chr21 35546837 35546963 -9360607 + L1MEd LINE L1 3536 3666 -2978 1343 218 36 0 chr21 35546968 35547248 -9360322 + AluJb SINE Alu 21 310 -2 561 279 89 53 chr21 35547251 35547549 -9360021 + L1MEd LINE L1 3664 3989 -2655 1508 211 0 42 chr21 35547549 35547862 -9359708 + AluJo SINE Alu 2 301 -11 561 279 89 53 chr21 35547862 35548069 -9359501 + L1MEd LINE L1 3989 4187 -2457 2856 22 0 0 chr21 35548078 35548390 -9359180 + AluYb8 SINE Alu 1 312 -6 665 146 10 0 chr21 35548453 35548549 -9359021 + FLAM_C SINE Alu 7 103 -40 3552 242 70 70 chr21 35548583 35548679 -9358891 + L1MEc LINE L1 2174 2268 -3947 1920 112 12 0 chr21 35548679 35548937 -9358633 + AluSx SINE Alu 37 297 -15 3552 242 70 70 chr21 35548937 35548972 -9358598 + L1MEc LINE L1 2268 2301 -3914 1583 173 58 0 chr21 35548972 35549260 -9358310 + AluJb SINE Alu 9 311 0 3552 242 70 70 chr21 35549260 35549300 -9358270 + L1MEc LINE L1 2301 2339 -3876 4328 166 10 6 chr21 35549300 35550019 -9357551 + L1MB2 LINE L1 5450 6171 0 3552 242 70 70 chr21 35550019 35551102 -9356468 + L1MEc LINE L1 2339 3433 -2782 1817 132 48 4 chr21 35551102 35551416 -9356154 + AluSx SINE Alu 1 326 0 3552 242 70 70 chr21 35551416 35551663 -9355907 + L1MEc LINE L1 3433 3678 -2537 22 0 0 0 chr21 35551685 35551707 -9355863 + AT_rich Low_complexity Low_complexity 1 22 0 559 286 24 19 chr21 35551759 35551925 -9355645 + L1MEc LINE L1 4526 4695 -1520 294 29 0 0 chr21 35551925 35551960 -9355610 + (TG)n Simple_repeat Simple_repeat 1 35 0 559 286 24 19 chr21 35551960 35552003 -9355567 + L1MEc LINE L1 4695 4736 -1479 606 219 67 71 chr21 35552358 35552568 -9355002 - MER3 DNA MER1_type 0 209 1 271 173 48 106 chr21 35553180 35553284 -9354286 + MLT1L LTR MaLR 173 270 -345 231 298 0 32 chr21 35553297 35553391 -9354179 - L1MEc LINE L1 -4429 2134 2044 285 221 32 42 chr21 35553519 35553614 -9353956 - L1MEc LINE L1 -4521 2042 1949 1848 153 3 29 chr21 35553624 35553937 -9353633 - AluJo SINE Alu -7 305 1 930 135 0 8 chr21 35553945 35554078 -9353492 - FLAM_C SINE Alu 0 133 2 2190 123 0 3 chr21 35554078 35554422 -9353148 - AluSc SINE Alu 0 309 1 979 276 7 18 chr21 35554428 35554707 -9352863 - L1MEc LINE L1 -4612 1951 1676 4715 157 20 29 chr21 35554709 35554964 -9352606 + L1PA16 LINE L1 5325 5581 -585 189 0 0 0 chr21 35554964 35554985 -9352585 + (TC)n Simple_repeat Simple_repeat 2 22 0 1720 156 55 0 chr21 35554985 35555260 -9352310 - AluJo SINE Alu -18 294 5 4715 157 20 29 chr21 35555260 35555449 -9352121 + L1PA16 LINE L1 5580 5769 -397 2154 107 21 0 chr21 35555449 35555739 -9351831 + AluSq SINE Alu 1 296 -17 4715 157 20 29 chr21 35555739 35556142 -9351428 + L1PA16 LINE L1 5769 6166 0 1665 202 3 3 chr21 35556148 35556455 -9351115 + AluJb SINE Alu 1 307 -5 342 296 94 36 chr21 35556479 35556786 -9350784 - L1MEc LINE L1 -4876 1508 1184 269 87 0 22 chr21 35556840 35556886 -9350684 - L1MA5 LINE L1 0 6300 6256 841 246 53 73 chr21 35556889 35557282 -9350288 - L1MEc LINE L1 -5254 1309 925 1788 151 72 4 chr21 35557282 35557561 -9350009 - AluJb SINE Alu -14 298 1 841 246 53 73 chr21 35557561 35557635 -9349935 - L1MEc LINE L1 -5638 925 851 2204 127 5 50 chr21 35557804 35558027 -9349543 - MER46B DNA MER2_type -2496 235 159 1930 110 92 0 chr21 35558027 35558299 -9349271 - AluSx SINE Alu -15 297 1 2204 127 5 50 chr21 35558299 35558452 -9349118 - MER46B DNA MER2_type -2572 159 1 279 158 53 11 chr21 35558745 35558840 -9348730 + (TA)n Simple_repeat Simple_repeat 2 100 0 693 42 21 85 chr21 35558841 35559030 -9348540 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 474 25 133 0 chr21 35559037 35559195 -9348375 + (TA)n Simple_repeat Simple_repeat 1 179 0 548 54 90 6 chr21 35559216 35559382 -9348188 + (TA)n Simple_repeat Simple_repeat 1 180 0 35 0 0 0 chr21 35559382 35559417 -9348153 + AT_rich Low_complexity Low_complexity 1 35 0 190 172 50 0 chr21 35559421 35559520 -9348050 + (TA)n Simple_repeat Simple_repeat 2 105 0 259 241 76 44 chr21 35559697 35559855 -9347715 + L1ME LINE L1 4323 4485 -1661 359 306 107 0 chr21 35559899 35560020 -9347550 - MIR SINE MIR -11 251 118 2253 116 0 0 chr21 35560139 35560441 -9347129 + AluSx SINE Alu 1 302 -10 1089 164 0 26 chr21 35560625 35560814 -9346756 + AluJb SINE Alu 129 312 0 333 258 87 84 chr21 35561069 35561192 -9346378 + L1ME LINE L1 5366 5485 -636 1764 186 3 0 chr21 35561192 35561488 -9346082 + AluJo SINE Alu 1 297 -15 333 258 87 84 chr21 35561488 35561599 -9345971 + L1ME LINE L1 5485 5594 -527 388 274 55 79 chr21 35561721 35561935 -9345635 - L1MDa LINE L1 -3651 2889 2671 1637 164 3 67 chr21 35561935 35562265 -9345305 - AluJb SINE Alu -3 309 1 2184 121 0 3 chr21 35562266 35562579 -9344991 - AluSq SINE Alu -1 312 1 388 274 55 79 chr21 35562579 35562654 -9344916 - L1MDa LINE L1 -3868 2672 2605 2856 171 12 4 chr21 35562662 35563153 -9344417 - L1MC1 LINE L1 -2 6331 5837 2070 101 41 16 chr21 35563170 35563488 -9344082 - L1MA1 LINE L1 -2 6300 5975 1589 143 4 0 chr21 35563488 35563733 -9343837 - L1MC1 LINE L1 -513 5820 5575 4345 103 5 27 chr21 35563733 35564370 -9343200 + L1PB1 LINE L1 5528 6151 0 1067 164 10 5 chr21 35564473 35564581 -9342989 - L1MC1 LINE L1 -2450 5592 5481 2039 161 104 42 chr21 35564581 35564820 -9342750 - MSTA LTR MaLR 0 428 151 2022 120 7 7 chr21 35564820 35565127 -9342443 + AluSx SINE Alu 1 307 0 2039 161 104 42 chr21 35565127 35565288 -9342282 - MSTA LTR MaLR -277 151 1 1067 164 10 5 chr21 35565288 35565374 -9342196 - L1MC1 LINE L1 -2561 5481 5397 3491 165 42 56 chr21 35565420 35565817 -9341753 - L1MB2 LINE L1 -1 6170 5769 2034 93 38 17 chr21 35565817 35566108 -9341462 - AluSx SINE Alu -15 297 1 1896 147 27 3 chr21 35566108 35566408 -9341162 - AluJo SINE Alu -2 310 4 3491 165 42 56 chr21 35566408 35566744 -9340826 - L1MB2 LINE L1 -400 5771 5446 1888 156 7 0 chr21 35566764 35567059 -9340511 + AluJb SINE Alu 1 297 -15 301 259 114 57 chr21 35567059 35567217 -9340353 - L1MDa LINE L1 -3974 2566 2400 825 159 0 8 chr21 35567253 35567385 -9340185 - FLAM_A SINE Alu -2 131 1 355 265 0 0 chr21 35567427 35567525 -9340045 - MIR SINE MIR -18 244 147 27 49 0 0 chr21 35567525 35567566 -9340004 + AT_rich Low_complexity Low_complexity 1 41 0 996 203 73 84 chr21 35567580 35567935 -9339635 - L1MC3 LINE L1 0 7785 7435 339 260 94 0 chr21 35568308 35568435 -9339135 + MIR SINE MIR 124 262 0 284 70 23 0 chr21 35569408 35569451 -9338119 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 982 234 77 27 chr21 35570301 35570524 -9337046 - L1MC5 LINE L1 -48 7913 7703 2047 82 0 4 chr21 35570524 35570780 -9336790 + AluSq SINE Alu 49 303 -10 1927 156 10 0 chr21 35570784 35571092 -9336478 + AluJb SINE Alu 1 311 -1 982 234 77 27 chr21 35571092 35571264 -9336306 - L1MC5 LINE L1 -260 7701 7493 206 203 0 17 chr21 35571271 35571330 -9336240 + C-rich Low_complexity Low_complexity 6 63 0 1728 154 20 24 chr21 35572035 35572198 -9335372 + AluJb SINE Alu 1 159 -153 2670 108 3 11 chr21 35572198 35572576 -9334994 - THE1C LTR MaLR 0 375 1 1728 154 20 24 chr21 35572576 35572730 -9334840 + AluJb SINE Alu 159 312 0 2116 78 71 11 chr21 35572734 35573017 -9334553 + AluY SINE Alu 1 300 -11 2319 115 0 0 chr21 35573076 35573388 -9334182 - AluSx SINE Alu 0 312 1 274 263 45 60 chr21 35573389 35573522 -9334048 - MIR SINE MIR -59 149 19 2145 85 33 0 chr21 35573744 35574044 -9333526 - AluSx SINE Alu 0 309 1 309 330 9 9 chr21 35574358 35574473 -9333097 - MIR3 SINE MIR -50 158 44 1806 177 7 3 chr21 35574853 35575147 -9332423 - AluJo SINE Alu -17 295 1 1632 194 16 19 chr21 35575173 35575505 -9332065 + AluJo SINE Alu 1 312 0 946 243 141 45 chr21 35575538 35576049 -9331521 + L1MC4 LINE L1 7480 8039 -3 898 276 57 57 chr21 35576056 35576134 -9331436 - HAL1 LINE L1 -36 2471 2394 2158 136 3 3 chr21 35576134 35576444 -9331126 - AluSx SINE Alu -2 310 1 898 276 57 57 chr21 35576444 35577657 -9329913 - HAL1 LINE L1 -113 2394 982 251 171 57 19 chr21 35577729 35577834 -9329736 + (TA)n Simple_repeat Simple_repeat 2 110 0 30 69 0 0 chr21 35577837 35577895 -9329675 + AT_rich Low_complexity Low_complexity 1 58 0 24 53 0 0 chr21 35577964 35578002 -9329568 + AT_rich Low_complexity Low_complexity 1 38 0 399 269 35 21 chr21 35578016 35578161 -9329409 - L1ME3 LINE L1 -79 6083 5937 1558 278 100 42 chr21 35578222 35579404 -9328166 - L1MEc LINE L1 -4357 2039 790 1380 114 0 2 chr21 35579548 35579798 -9327772 - AluY SINE Alu 0 309 1 1092 249 0 9 chr21 35580545 35580770 -9326800 + MER58A DNA MER1_type 1 223 -1 2403 69 0 20 chr21 35581202 35581506 -9326064 + AluY SINE Alu 1 298 -13 21 57 0 0 chr21 35582036 35582071 -9325499 + AT_rich Low_complexity Low_complexity 1 35 0 2086 103 12 62 chr21 35582372 35582500 -9325070 + AluJb SINE Alu 3 136 -176 2411 77 13 0 chr21 35582500 35582798 -9324772 + AluSp SINE Alu 1 302 -11 2086 103 12 62 chr21 35582798 35582990 -9324580 + AluJb SINE Alu 136 307 -5 316 286 44 55 chr21 35583003 35583185 -9324385 + L1MEc LINE L1 2066 2245 -4151 652 64 53 11 chr21 35583198 35583292 -9324278 - MER75 DNA T2_type 0 514 417 831 148 0 0 chr21 35583292 35583414 -9324156 - AluJb SINE Alu -16 296 175 2858 94 36 10 chr21 35583414 35583827 -9323743 - MER75 DNA T2_type -90 424 1 2512 261 41 25 chr21 35583852 35584591 -9322979 + L1MEc LINE L1 2240 2999 -3216 1786 78 0 0 chr21 35584591 35584810 -9322760 + AluSg/x SINE Alu 82 300 -10 2512 261 41 25 chr21 35584810 35585003 -9322567 + L1MEc LINE L1 2999 3187 -3028 290 368 43 22 chr21 35585127 35585312 -9322258 + L2 LINE L2 3084 3272 0 1674 189 0 3 chr21 35585828 35586114 -9321456 + AluJb SINE Alu 1 285 -27 21 0 0 0 chr21 35586114 35586135 -9321435 + AT_rich Low_complexity Low_complexity 1 21 0 198 205 0 0 chr21 35586272 35586311 -9321259 - L2 LINE L2 -12 3301 3263 232 229 198 0 chr21 35586434 35586530 -9321040 - L1ME4a LINE L1 0 6121 6007 21 57 0 0 chr21 35586537 35586572 -9320998 + AT_rich Low_complexity Low_complexity 1 35 0 509 305 96 20 chr21 35586751 35587053 -9320517 + L3 LINE CR1 1143 1467 -110 2324 96 0 0 chr21 35587142 35587435 -9320135 - AluSx SINE Alu -19 293 1 189 328 16 0 chr21 35588630 35588694 -9318876 - L2 LINE L2 -5 3267 3203 2108 118 7 0 chr21 35589160 35589471 -9318099 + AluSx SINE Alu 1 313 0 1915 171 0 13 chr21 35589477 35589793 -9317777 + AluJo SINE Alu 1 312 0 220 98 20 78 chr21 35589795 35589846 -9317724 + (CAAAC)n Simple_repeat Simple_repeat 3 50 0 2151 113 14 0 chr21 35590350 35590643 -9316927 - AluSx SINE Alu -15 297 1 180 0 0 0 chr21 35590814 35590834 -9316736 + (TC)n Simple_repeat Simple_repeat 2 21 0 2162 122 3 0 chr21 35590941 35591235 -9316335 + AluSq SINE Alu 1 295 -18 2268 94 0 7 chr21 35591447 35591755 -9315815 + AluSc SINE Alu 1 306 -3 257 310 10 20 chr21 35591911 35592011 -9315559 + L1ME4a LINE L1 5502 5600 -521 367 289 118 62 chr21 35592026 35592465 -9315105 + L1ME4a LINE L1 5645 6108 -13 1936 169 0 6 chr21 35592511 35592824 -9314746 + AluJb SINE Alu 1 311 -1 2264 118 0 0 chr21 35592951 35593255 -9314315 + AluSx SINE Alu 1 304 -8 1417 200 108 17 chr21 35593574 35593934 -9313636 - MLT1C LTR MaLR 0 467 75 400 238 159 40 chr21 35593959 35594110 -9313460 + MIR SINE MIR 20 188 -74 180 77 0 0 chr21 35596194 35596220 -9311350 + (CCCCCT)n Simple_repeat Simple_repeat 4 29 0 212 214 35 35 chr21 35596241 35596386 -9311184 + (CGCGG)n Simple_repeat Simple_repeat 4 148 0 223 197 0 61 chr21 35596409 35596475 -9311095 + C-rich Low_complexity Low_complexity 1 62 0 270 194 0 0 chr21 35596928 35596990 -9310580 + (CTG)n Simple_repeat Simple_repeat 3 64 0 286 280 0 0 chr21 35597009 35597102 -9310468 + (TG)n Simple_repeat Simple_repeat 1 93 0 28 0 0 0 chr21 35597143 35597171 -9310399 + GC_rich Low_complexity Low_complexity 1 28 0 27 87 0 0 chr21 35597250 35597319 -9310251 + GC_rich Low_complexity Low_complexity 1 69 0 202 255 31 20 chr21 35597420 35597518 -9310052 + G-rich Low_complexity Low_complexity 5 103 0 234 141 71 47 chr21 35597577 35597662 -9309908 + (CCCGG)n Simple_repeat Simple_repeat 5 91 0 25 31 0 0 chr21 35597691 35597723 -9309847 + GC_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr21 35597791 35597833 -9309737 + GC_rich Low_complexity Low_complexity 1 42 0 303 130 0 0 chr21 35597883 35597937 -9309633 + (TCC)n Simple_repeat Simple_repeat 1 54 0 205 102 41 41 chr21 35598016 35598065 -9309505 + (CCGGG)n Simple_repeat Simple_repeat 3 51 0 281 252 86 0 chr21 35598548 35598680 -9308890 - MIR SINE MIR -33 229 77 1680 143 68 4 chr21 35602104 35602222 -9305348 + AluJb SINE Alu 1 110 -202 183 42 0 0 chr21 35602222 35602246 -9305324 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1680 143 68 4 chr21 35602246 35602406 -9305164 + AluJb SINE Alu 110 297 -15 398 265 142 12 chr21 35602506 35602668 -9304902 + MIR SINE MIR 22 204 -58 22 80 0 0 chr21 35602877 35602927 -9304643 + AT_rich Low_complexity Low_complexity 1 50 0 225 316 13 0 chr21 35602927 35603006 -9304564 + L2 LINE L2 3184 3263 -50 217 331 56 25 chr21 35603043 35603203 -9304367 + MIR SINE MIR 47 211 -51 439 275 140 10 chr21 35603371 35603571 -9303999 - MLT1J LTR MaLR 0 511 286 739 257 105 5 chr21 35603602 35603812 -9303758 - MLT1J LTR MaLR -280 231 1 259 243 112 79 chr21 35604411 35604500 -9303070 - MER5A DNA MER1_type -30 159 61 2397 78 0 3 chr21 35604500 35604795 -9302775 - AluY SINE Alu -17 294 1 259 243 112 79 chr21 35604795 35604857 -9302713 - MER5A DNA MER1_type -128 61 3 2021 111 66 7 chr21 35605462 35605751 -9301819 - AluSq SINE Alu -7 306 1 993 217 113 8 chr21 35605816 35606056 -9301514 + LTR1B LTR ERV1 67 331 -495 1726 141 52 4 chr21 35606170 35606439 -9301131 + AluSg SINE Alu 1 282 -28 2311 77 0 0 chr21 35607075 35607360 -9300210 - AluY SINE Alu -25 286 2 995 303 80 9 chr21 35607363 35607418 -9300152 - L1MC4a LINE L1 -1926 5882 5832 1566 171 50 14 chr21 35607418 35607699 -9299871 - AluJo SINE Alu -21 291 1 995 303 80 9 chr21 35607699 35608108 -9299462 - L1MC4a LINE L1 -1976 5832 5385 2188 107 3 3 chr21 35608193 35608492 -9299078 + AluSp SINE Alu 1 299 -14 234 283 17 58 chr21 35609792 35609912 -9297658 - L2 LINE L2 -15 3257 3143 398 262 177 0 chr21 35610937 35611101 -9296469 + L2 LINE L2 3117 3309 -4 859 146 41 41 chr21 35611589 35611760 -9295810 + AluJb SINE Alu 135 305 -7 307 289 9 35 chr21 35612037 35612151 -9295419 - L2 LINE L2 -10 3303 3193 38 0 0 0 chr21 35612151 35612189 -9295381 + AT_rich Low_complexity Low_complexity 1 38 0 482 70 14 14 chr21 35612203 35612274 -9295296 - FLAM_A SINE Alu -30 112 42 944 241 103 97 chr21 35612912 35613426 -9294144 + LTR67 LTR ERVL 35 551 -6 505 238 55 28 chr21 35613580 35613761 -9293809 - L2 LINE L2 -24 3289 3104 231 36 0 0 chr21 35613775 35613803 -9293767 + (TG)n Simple_repeat Simple_repeat 2 29 0 2303 292 89 14 chr21 35613870 35614868 -9292702 + L1MEc LINE L1 71 1143 -5253 267 225 100 0 chr21 35614859 35614939 -9292631 + L1MEc LINE L1 856 943 -5453 * 1747 237 156 10 chr21 35615118 35615624 -9291946 - MLT1E LTR MaLR -8 585 6 235 186 0 0 chr21 35615849 35615892 -9291678 - MER103 DNA DNA -43 123 81 1263 79 0 79 chr21 35616121 35616323 -9291247 + Charlie3 DNA MER1_type 2521 2706 -4 252 184 53 66 chr21 35616477 35616553 -9291017 - HAL1 LINE L1 -111 2396 2322 311 282 196 14 chr21 35616553 35616773 -9290797 - MLT1L LTR MaLR 0 607 329 261 217 217 0 chr21 35616886 35616969 -9290601 - MLT1L LTR MaLR -427 188 88 226 177 32 32 chr21 35617048 35617110 -9290460 - MLT1L LTR MaLR -537 78 17 1167 268 128 16 chr21 35617201 35617825 -9289745 - HAL1 LINE L1 -291 2216 1523 1490 170 82 7 chr21 35618043 35618325 -9289245 - AluJo SINE Alu -9 303 1 406 236 118 38 chr21 35618346 35618583 -9288987 - L1MC5 LINE L1 -191 7770 7515 2355 86 13 0 chr21 35618583 35618886 -9288684 - AluY SINE Alu -4 307 1 332 105 0 70 chr21 35618904 35618961 -9288609 - Alu SINE Alu -10 290 238 838 171 0 8 chr21 35618992 35619121 -9288449 - FLAM_C SINE Alu -5 128 1 23 33 0 0 chr21 35619140 35619170 -9288400 + AT_rich Low_complexity Low_complexity 1 30 0 1400 161 0 14 chr21 35619179 35619402 -9288168 - AluJo SINE Alu -86 226 7 573 249 52 6 chr21 35619499 35619672 -9287898 - HAL1 LINE L1 -1570 937 757 919 183 11 21 chr21 35619856 35620042 -9287528 - AluJo SINE Alu -2 310 127 1086 266 65 25 chr21 35620252 35620516 -9287054 - L1MC4 LINE L1 -132 7910 7621 2199 105 7 3 chr21 35620516 35620812 -9286758 - AluSx SINE Alu -15 297 1 1086 266 65 25 chr21 35620812 35620980 -9286590 - L1MC4 LINE L1 -421 7621 7461 251 241 36 0 chr21 35620986 35621069 -9286501 - L1M4 LINE L1 -983 5163 5078 484 260 16 0 chr21 35621071 35621198 -9286372 - L1MD3 LINE L1 -1210 6785 6657 232 262 318 0 chr21 35621911 35622018 -9285552 - MIR SINE MIR -43 219 79 223 261 120 11 chr21 35622035 35622127 -9285443 - L2 LINE L2 -8 3305 3204 223 196 71 18 chr21 35622193 35622249 -9285321 + L2 LINE L2 3014 3072 -200 1249 208 52 16 chr21 35622355 35622667 -9284903 - MLT1A1 LTR MaLR 0 365 10 1133 193 41 114 chr21 35622671 35623064 -9284506 - MLT1A1 LTR MaLR -1 364 1 479 221 106 44 chr21 35623595 35624026 -9283544 - MLT1G1 LTR MaLR 0 588 20 454 50 0 0 chr21 35624195 35624255 -9283315 - L1PA4 LINE L1 -3 6152 6093 21 0 0 0 chr21 35624304 35624325 -9283245 + AT_rich Low_complexity Low_complexity 1 21 0 2236 133 9 6 chr21 35624412 35624744 -9282826 + MER1B DNA MER1_type 1 333 -6 289 81 0 0 chr21 35625320 35625357 -9282213 + LTR23 LTR ERV1 320 356 -81 549 168 0 37 chr21 35625372 35625479 -9282091 + MER106B DNA MER1_type 49 151 -908 27 29 0 0 chr21 35625490 35625524 -9282046 + AT_rich Low_complexity Low_complexity 1 34 0 375 222 121 22 chr21 35627034 35627169 -9280401 - MLT1J2 LTR MaLR -286 199 45 348 263 104 37 chr21 35627594 35627754 -9279816 - MER5A DNA MER1_type -8 181 4 730 131 66 16 chr21 35627898 35628020 -9279550 + AluJo SINE Alu 1 128 -174 311 132 15 0 chr21 35628020 35628088 -9279482 + (TA)n Simple_repeat Simple_repeat 1 69 0 204 40 0 0 chr21 35628106 35628131 -9279439 + (CA)n Simple_repeat Simple_repeat 2 26 0 815 168 36 36 chr21 35628137 35628304 -9279266 + AluJo SINE Alu 134 300 -12 198 227 136 0 chr21 35628357 35628423 -9279147 - MIR SINE MIR -84 178 104 261 365 37 9 chr21 35628580 35628687 -9278883 - L2 LINE L2 -35 3237 3128 22 0 0 0 chr21 35628847 35628869 -9278701 + AT_rich Low_complexity Low_complexity 1 22 0 241 353 0 24 chr21 35629425 35629510 -9278060 - L2 LINE L2 -36 3236 3154 1459 225 80 39 chr21 35629866 35630351 -9277219 - MLT1D LTR MaLR 0 505 1 2240 117 3 0 chr21 35630805 35631105 -9276465 + AluSx SINE Alu 1 301 -11 2224 113 0 0 chr21 35631425 35631725 -9275845 - AluSq SINE Alu -13 300 1 872 267 124 66 chr21 35632152 35632695 -9274875 - L1MEc LINE L1 -4624 1939 1429 2109 135 0 6 chr21 35632695 35633007 -9274563 - AluSx SINE Alu -2 310 1 872 267 124 66 chr21 35633007 35633401 -9274169 - L1MEc LINE L1 -5134 1429 790 859 217 47 79 chr21 35633410 35633606 -9273964 - AluJo SINE Alu -30 282 94 333 0 0 0 chr21 35633606 35633643 -9273927 + (TG)n Simple_repeat Simple_repeat 2 38 0 859 217 47 79 chr21 35633643 35633699 -9273871 - AluJo SINE Alu -218 94 38 330 127 28 203 chr21 35634033 35634176 -9273394 - MLT2B1 LTR ERVL 0 520 399 409 200 12 0 chr21 35634178 35634258 -9273312 - MLT2B2 LTR ERVL -434 81 1 225 300 177 44 chr21 35634427 35634744 -9272826 - L1MEc LINE L1 -5999 564 206 212 320 144 57 chr21 35635113 35635447 -9272123 - L3 LINE CR1 -26 1551 1189 1802 155 3 26 chr21 35636360 35636663 -9270907 + AluSx SINE Alu 5 300 -12 456 174 0 0 chr21 35636664 35636785 -9270785 + (TA)n Simple_repeat Simple_repeat 2 122 0 21 57 0 0 chr21 35636864 35636899 -9270671 + AT_rich Low_complexity Low_complexity 1 35 0 1603 160 108 0 chr21 35637063 35637388 -9270182 - MER46B DNA MER2_type -1 235 1 301 323 21 0 chr21 35637501 35637594 -9269976 + MIR3 SINE MIR 93 187 -21 247 261 0 15 chr21 35638286 35638351 -9269219 - L1MC5 LINE L1 -60 7901 7838 25 0 0 0 chr21 35638497 35638522 -9269048 + AT_rich Low_complexity Low_complexity 1 25 0 202 280 120 0 chr21 35639180 35639255 -9268315 - MIR SINE MIR -16 246 163 23 33 0 0 chr21 35639861 35639891 -9267679 + AT_rich Low_complexity Low_complexity 1 30 0 214 285 153 7 chr21 35640172 35640316 -9267254 + L3b LINE CR1 1204 1368 -215 853 188 13 19 chr21 35640487 35640641 -9266929 - FRAM SINE Alu -30 146 1 1968 168 0 3 chr21 35640708 35641018 -9266552 + AluSx SINE Alu 1 309 -3 2107 108 4 4 chr21 35641020 35641298 -9266272 + AluSg SINE Alu 3 280 -30 273 275 142 8 chr21 35641666 35641786 -9265784 - L1ME4a LINE L1 -22 6099 5964 295 280 93 51 chr21 35642335 35642453 -9265117 + MER5A DNA MER1_type 1 123 -66 246 303 25 0 chr21 35643257 35643376 -9264194 + (TA)n Simple_repeat Simple_repeat 2 123 0 180 125 0 0 chr21 35643999 35644031 -9263539 + (TA)n Simple_repeat Simple_repeat 2 33 0 545 278 72 10 chr21 35644225 35644434 -9263136 + MIR SINE MIR 2 223 -39 1808 161 3 10 chr21 35645411 35645709 -9261861 - AluJb SINE Alu -16 296 1 489 278 53 30 chr21 35646025 35646194 -9261376 + MIR SINE MIR 84 256 -6 180 0 0 0 chr21 35646260 35646280 -9261290 + (T)n Simple_repeat Simple_repeat 1 20 0 2128 94 17 11 chr21 35647144 35647431 -9260139 - AluSp SINE Alu -24 289 1 411 98 0 0 chr21 35647436 35647497 -9260073 + (T)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr21 35651361 35651383 -9256187 + AT_rich Low_complexity Low_complexity 1 22 0 867 113 0 7 chr21 35652608 35652749 -9254821 + L1MA9 LINE L1 6168 6307 -5 264 207 0 69 chr21 35652942 35653000 -9254570 - L2 LINE L2 -10 3262 3209 205 287 139 16 chr21 35653118 35653240 -9254330 + L2 LINE L2 2172 2308 -1006 2281 78 0 33 chr21 35656571 35656878 -9250692 + AluY SINE Alu 1 297 -14 1585 164 7 48 chr21 35657064 35657357 -9250213 - AluJo SINE Alu -22 290 10 428 268 83 12 chr21 35657539 35657707 -9249863 - L1ME LINE L1 -440 5681 5502 663 236 171 23 chr21 35657897 35658113 -9249457 - MIR SINE MIR -7 255 8 558 131 0 0 chr21 35658789 35658873 -9248697 - AluS SINE Alu -229 84 1 1870 166 127 5 chr21 35659268 35659647 -9247923 - MSTA LTR MaLR 0 428 4 23 0 0 0 chr21 35659989 35660012 -9247558 + AT_rich Low_complexity Low_complexity 1 23 0 1260 92 6 0 chr21 35662769 35662933 -9244637 + AluSp SINE Alu 134 298 -15 204 40 0 0 chr21 35662987 35663012 -9244558 + (TA)n Simple_repeat Simple_repeat 2 26 0 216 352 84 14 chr21 35663765 35663907 -9243663 + MIR3 SINE MIR 50 201 -7 21 0 0 0 chr21 35664636 35664657 -9242913 + AT_rich Low_complexity Low_complexity 1 21 0 214 290 0 58 chr21 35667263 35667332 -9240238 - L2 LINE L2 -874 2440 2376 451 225 36 7 chr21 35667394 35667532 -9240038 - L1MA10 LINE L1 -1 6333 6192 4481 216 78 39 chr21 35667564 35669396 -9238174 - L1ME1 LINE L1 -263 5972 4058 1403 145 176 14 chr21 35669396 35669686 -9237884 + MER1B DNA MER1_type 1 337 0 4481 216 78 39 chr21 35669686 35670005 -9237565 - L1ME1 LINE L1 -2177 4058 3753 2613 259 63 44 chr21 35669986 35670073 -9237497 - L1ME1 LINE L1 -2967 3248 3164 * 2365 98 0 3 chr21 35670073 35670379 -9237191 - AluSx SINE Alu -7 305 1 2613 259 63 44 chr21 35670379 35672519 -9235051 - L1ME1 LINE L1 -3051 3164 1021 593 174 0 104 chr21 35672534 35672678 -9234892 - FLAM_C SINE Alu -1 132 4 1544 165 50 11 chr21 35672778 35673057 -9234513 - AluJo SINE Alu -13 299 10 817 204 37 0 chr21 35673088 35673250 -9234320 - FRAM SINE Alu -8 168 1 1131 257 24 13 chr21 35673264 35673641 -9233929 - L1ME1 LINE L1 -5472 924 544 1380 162 38 17 chr21 35673646 35673936 -9233634 - MLT1C LTR MaLR -170 297 2 610 250 7 0 chr21 35674918 35675054 -9232516 - MIR SINE MIR -112 150 14 257 291 64 14 chr21 35675069 35675210 -9232360 + MER113 DNA MER1_type? 86 233 -288 447 234 71 50 chr21 35675332 35675473 -9232097 - L2 LINE L2 -11 3302 3159 712 131 39 39 chr21 35675804 35675934 -9231636 + AluJo SINE Alu 1 130 -182 199 170 377 19 chr21 35676597 35676703 -9230867 - MIR3 SINE MIR -11 197 54 211 253 13 13 chr21 35677249 35677324 -9230246 + (TA)n Simple_repeat Simple_repeat 1 75 0 849 192 6 22 chr21 35677399 35677581 -9229989 + MER58A DNA MER1_type 46 224 0 24 32 0 0 chr21 35678250 35678281 -9229289 + AT_rich Low_complexity Low_complexity 1 31 0 337 275 50 42 chr21 35678307 35678427 -9229143 + MER5A DNA MER1_type 37 157 -32 1781 179 0 26 chr21 35678632 35678934 -9228636 - AluJb SINE Alu -12 300 7 942 271 86 10 chr21 35679179 35679588 -9227982 - MLT1J1 LTR MaLR 0 446 7 262 291 30 30 chr21 35679774 35679908 -9227662 - LTR67 LTR ERVL -6 551 418 265 318 37 48 chr21 35680090 35680279 -9227291 - LTR67 LTR ERVL -368 189 3 189 260 0 0 chr21 35680367 35680417 -9227153 + MIR3 SINE MIR 112 161 -47 241 200 0 0 chr21 35680438 35680483 -9227087 - L2 LINE L2 0 3313 3269 482 188 69 0 chr21 35680835 35680936 -9226634 + Tigger3(Golem) DNA MER2_type 1 108 -2921 2092 142 131 68 chr21 35680940 35681544 -9226026 + Tigger3(Golem) DNA MER2_type 2290 2931 -98 501 250 0 28 chr21 35681583 35681727 -9225843 + Tigger3(Golem) DNA MER2_type 2880 3019 -10 370 286 6 29 chr21 35682409 35682580 -9224990 - MER117 DNA MER1_type -30 167 1 201 175 0 25 chr21 35682585 35682625 -9224945 + GA-rich Low_complexity Low_complexity 2 40 0 197 320 46 72 chr21 35682630 35682824 -9224746 + L2 LINE L2 3083 3271 -42 316 98 98 0 chr21 35682826 35682887 -9224683 - MER33 DNA MER1_type 0 363 297 858 174 11 28 chr21 35682891 35683069 -9224501 + AluJo SINE Alu 120 294 -18 656 222 97 0 chr21 35683069 35683307 -9224263 - MER33 DNA MER1_type -74 250 1 236 83 0 0 chr21 35683307 35683343 -9224227 + L2 LINE L2 3236 3271 -1 1978 155 3 3 chr21 35684028 35684332 -9223238 - AluJo SINE Alu -5 307 4 215 320 70 10 chr21 35685144 35685244 -9222326 - MIR3 SINE MIR -94 114 9 435 254 152 42 chr21 35685701 35685918 -9221652 - MIR SINE MIR -15 247 7 531 82 0 0 chr21 35686954 35687027 -9220543 + (TTTA)n Simple_repeat Simple_repeat 1 73 0 982 162 26 0 chr21 35687030 35687184 -9220386 - AluSg/x SINE Alu -30 280 123 1779 130 11 25 chr21 35687194 35687479 -9220091 - AluSx SINE Alu -31 281 1 351 0 0 0 chr21 35688211 35688250 -9219320 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr21 35688263 35688284 -9219286 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr21 35689849 35689880 -9217690 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr21 35690770 35690823 -9216747 + AT_rich Low_complexity Low_complexity 1 53 0 22 80 0 0 chr21 35691177 35691227 -9216343 + AT_rich Low_complexity Low_complexity 1 50 0 1122 283 80 39 chr21 35691252 35692919 -9214651 - L1MCa LINE L1 -4420 1976 35 356 129 0 14 chr21 35693106 35693176 -9214394 + (TG)n Simple_repeat Simple_repeat 2 70 0 303 256 0 35 chr21 35693303 35693389 -9214181 - L2 LINE L2 -5 3308 3226 416 244 0 0 chr21 35693556 35693642 -9213928 - L2 LINE L2 0 3313 3228 375 145 0 53 chr21 35694637 35694713 -9212857 - MER116 DNA Mariner -1 79 8 257 325 0 13 chr21 35695451 35695497 -9212073 + MER5A DNA MER1_type 31 77 -112 2118 141 0 0 chr21 35695497 35695796 -9211774 + AluSx SINE Alu 1 299 -13 257 325 0 13 chr21 35695796 35695826 -9211744 + MER5A DNA MER1_type 77 106 -83 525 266 57 13 chr21 35696437 35696666 -9210904 + L1ME LINE L1 2216 2454 -3692 341 271 85 0 chr21 35696868 35696986 -9210584 + L1ME LINE L1 3340 3467 -2679 210 91 0 0 chr21 35697044 35697077 -9210493 + (A)n Simple_repeat Simple_repeat 1 33 0 891 239 50 71 chr21 35697147 35697182 -9210388 + L1ME LINE L1 3788 3822 -2324 1551 183 38 7 chr21 35697182 35697472 -9210098 - AluJb SINE Alu -13 299 1 891 239 50 71 chr21 35697472 35697858 -9209712 + L1ME LINE L1 3822 4200 -1946 317 216 125 0 chr21 35697858 35697946 -9209624 - MER3 DNA MER1_type -108 101 3 457 280 112 50 chr21 35697949 35698057 -9209513 + L1ME LINE L1 4574 4674 -1496 1506 195 31 14 chr21 35698057 35698349 -9209221 - AluJo SINE Alu -15 297 1 457 280 112 50 chr21 35698349 35699166 -9208404 + L1ME LINE L1 4674 5558 -612 378 221 19 29 chr21 35699209 35699313 -9208257 + L1ME LINE L1 5670 5772 -398 2045 139 87 30 chr21 35699402 35699804 -9207766 - MSTA LTR MaLR -3 425 1 2401 59 3 0 chr21 35699822 35700109 -9207461 + AluY SINE Alu 17 304 -7 284 335 40 40 chr21 35700357 35700530 -9207040 - MIR SINE MIR -6 256 84 350 252 76 0 chr21 35700646 35700765 -9206805 - L1ME LINE L1 -360 5761 5634 537 254 169 11 chr21 35701456 35701663 -9205907 - MIR SINE MIR -17 245 9 26 0 0 0 chr21 35702973 35702999 -9204571 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr21 35704172 35704212 -9203358 + AT_rich Low_complexity Low_complexity 1 40 0 308 271 67 14 chr21 35706121 35706262 -9201308 + MIR SINE MIR 60 206 -56 25 31 0 0 chr21 35708490 35708522 -9199048 + AT_rich Low_complexity Low_complexity 1 32 0 2438 69 0 25 chr21 35709550 35709869 -9197701 - AluY SINE Alu 0 311 1 469 204 92 33 chr21 35710164 35710316 -9197254 + L1ME2 LINE L1 5997 6157 -7 2063 115 0 17 chr21 35711331 35711638 -9195932 - AluSx SINE Alu 0 302 1 793 153 0 51 chr21 35711666 35711803 -9195767 + FLAM_C SINE Alu 1 130 -3 7602 71 7 9 chr21 35712208 35713268 -9194302 - MER11C LTR ERVK -14 1057 1 264 30 0 0 chr21 35713506 35713539 -9194031 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1654 163 14 14 chr21 35713543 35713825 -9193745 - AluJo SINE Alu -30 282 1 1370 129 25 33 chr21 35713953 35714194 -9193376 + MER1B DNA MER1_type 57 295 -44 2143 126 0 7 chr21 35714272 35714573 -9192997 - AluSq SINE Alu -14 299 1 323 239 11 65 chr21 35714965 35715057 -9192513 - MER5B DNA MER1_type 0 178 92 377 187 75 9 chr21 35717375 35717482 -9190088 - MER104 DNA Tc2 -5 175 62 517 66 0 121 chr21 35720472 35720563 -9187007 + MADE1 DNA Mariner 1 80 0 229 284 69 49 chr21 35721834 35721936 -9185634 + MER5A DNA MER1_type 36 139 -50 21 0 0 0 chr21 35722496 35722517 -9185053 + AT_rich Low_complexity Low_complexity 1 21 0 196 354 25 0 chr21 35723764 35723843 -9183727 - MIR SINE MIR -123 139 59 463 131 0 48 chr21 35723870 35723954 -9183616 - AluSx SINE Alu -3 307 228 1301 128 0 0 chr21 35723954 35724134 -9183436 - AluSx SINE Alu -132 180 1 533 315 153 16 chr21 35724268 35724609 -9182961 + L2 LINE L2 2752 3176 -137 2128 122 7 0 chr21 35724609 35724903 -9182667 + AluSx SINE Alu 2 297 -15 533 315 153 16 chr21 35724903 35725031 -9182539 + L2 LINE L2 3176 3285 -28 450 0 0 0 chr21 35725095 35725145 -9182425 + (TG)n Simple_repeat Simple_repeat 1 50 0 1774 148 13 57 chr21 35725170 35725318 -9182252 + AluJb SINE Alu 1 129 -183 1858 113 102 4 chr21 35725318 35725583 -9181987 + AluSx SINE Alu 1 291 -21 1774 148 13 57 chr21 35725583 35725752 -9181818 + AluJb SINE Alu 129 304 -8 454 312 75 20 chr21 35725796 35725995 -9181575 + L2 LINE L2 3102 3311 -2 24 32 0 0 chr21 35727862 35727893 -9179677 + AT_rich Low_complexity Low_complexity 1 31 0 1960 224 141 20 chr21 35728168 35728947 -9178623 - L1ME2 LINE L1 -7 6958 6078 1055 218 53 53 chr21 35728958 35729334 -9178236 - L1ME2 LINE L1 -890 6051 5676 1514 178 72 25 chr21 35729336 35729741 -9177829 - L1ME2 LINE L1 -1460 5481 5058 479 139 0 14 chr21 35729742 35729814 -9177756 + Tigger2 DNA MER2_type 1 71 -2647 1002 181 17 17 chr21 35729849 35730026 -9177544 - MER8 DNA MER2_type -62 177 1 3882 243 75 33 chr21 35730134 35731110 -9176460 - L1ME2 LINE L1 -2195 4746 3676 2372 96 3 0 chr21 35731110 35731411 -9176159 - AluSc SINE Alu -7 302 1 3882 243 75 33 chr21 35731411 35732028 -9175542 - L1ME2 LINE L1 -3265 3676 3086 1826 247 105 57 chr21 35732088 35733360 -9174210 - L1ME2 LINE L1 -3999 3123 1791 1352 184 12 16 chr21 35733378 35733623 -9173947 - AluJo SINE Alu -25 287 44 426 260 47 68 chr21 35733647 35734059 -9173511 - L1ME2 LINE L1 -4887 1536 1165 504 247 199 0 chr21 35734835 35735001 -9172569 - MER58C DNA MER1_type -16 199 1 264 304 95 25 chr21 35736359 35736517 -9171053 - MIR SINE MIR -8 254 86 422 338 155 42 chr21 35736832 35738248 -9169322 + L2 LINE L2 1146 2787 -485 1971 131 3 0 chr21 35738248 35738530 -9169040 - AluSx SINE Alu -29 283 1 422 338 155 42 chr21 35738530 35738844 -9168726 + L2 LINE L2 2787 3064 -208 675 236 129 58 chr21 35738984 35739378 -9168192 - L1MC4a LINE L1 -1636 6172 5751 1281 191 86 0 chr21 35739398 35739655 -9167915 - AluJo SINE Alu -20 292 14 292 227 0 80 chr21 35739664 35739752 -9167818 - L1MC4a LINE L1 -2043 5765 5685 929 179 150 14 chr21 35739769 35739976 -9167594 + Tigger7 DNA MER2_type 32 266 -284 578 177 21 0 chr21 35739974 35740070 -9167500 + Tigger7 DNA MER2_type 2490 2587 0 * 394 286 34 8 chr21 35740070 35740189 -9167381 - L1MC4a LINE L1 -2121 5687 5566 662 307 110 47 chr21 35740364 35740503 -9167067 - L2 LINE L2 -86 3227 3098 835 253 191 31 chr21 35740503 35740891 -9166679 - MLT1J2 LTR MaLR 0 450 1 662 307 110 47 chr21 35740891 35741421 -9166149 - L2 LINE L2 -215 3098 2494 237 261 96 70 chr21 35741459 35741574 -9165996 + MER58C DNA MER1_type 98 215 0 297 75 0 0 chr21 35742000 35742040 -9165530 + (CACCAT)n Simple_repeat Simple_repeat 3 42 0 216 67 0 0 chr21 35742902 35742932 -9164638 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1034 215 54 15 chr21 35747826 35748086 -9159484 - AluJo SINE Alu -5 307 38 366 284 61 20 chr21 35748353 35748501 -9159069 - MER5B DNA MER1_type -10 168 15 1991 141 17 0 chr21 35748559 35748856 -9158714 - AluSx SINE Alu -10 302 1 380 352 52 10 chr21 35749244 35749437 -9158133 + MIR SINE MIR 51 251 -11 2390 55 0 14 chr21 35749680 35749973 -9157597 - AluY SINE Alu -7 304 16 272 271 0 0 chr21 35751393 35751452 -9156118 - L2 LINE L2 -10 3262 3204 216 304 9 27 chr21 35751712 35751824 -9155746 - L2 LINE L2 -759 2555 2446 526 221 188 7 chr21 35752121 35752270 -9155300 + MER5A DNA MER1_type 14 189 0 225 250 97 0 chr21 35752278 35752350 -9155220 - MIR SINE MIR -117 145 67 1483 183 39 4 chr21 35752994 35753273 -9154297 - AluJb SINE Alu -23 289 1 2160 182 124 35 chr21 35753605 35754089 -9153481 + Cheshire DNA MER1_type 43 569 -1851 810 188 0 15 chr21 35754090 35754223 -9153347 + FLAM_C SINE Alu 3 133 -10 8011 169 55 42 chr21 35754251 35754759 -9152811 + Cheshire DNA MER1_type 586 1086 -1334 2095 137 0 3 chr21 35754759 35755052 -9152518 + AluSx SINE Alu 1 292 -20 8011 169 55 42 chr21 35755052 35755132 -9152438 + Cheshire DNA MER1_type 1086 1164 -1256 2583 133 8 3 chr21 35755132 35755494 -9152076 - THE1B LTR MaLR 0 364 1 8011 169 55 42 chr21 35755494 35756316 -9151254 + Cheshire DNA MER1_type 1164 2026 -394 1946 147 0 26 chr21 35756316 35756622 -9150948 + AluJb SINE Alu 1 298 -14 8011 169 55 42 chr21 35756622 35757006 -9150564 + Cheshire DNA MER1_type 2026 2404 -16 364 272 65 54 chr21 35757328 35757512 -9150058 - MIR SINE MIR -70 192 7 1788 146 0 52 chr21 35757634 35757963 -9149607 - AluJo SINE Alu 0 312 1 506 258 45 8 chr21 35757973 35758105 -9149465 + MIR SINE MIR 53 189 -73 776 226 17 0 chr21 35758627 35758804 -9148766 + MIR SINE MIR 66 245 -17 226 320 41 10 chr21 35758845 35758942 -9148628 - MIR SINE MIR -151 111 12 279 113 0 0 chr21 35759394 35759447 -9148123 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 1678 142 0 82 chr21 35760183 35760499 -9147071 + AluJo SINE Alu 1 290 -22 2164 200 159 14 chr21 35760518 35761104 -9146466 - LTR51 LTR ERV1 0 671 1 209 237 0 40 chr21 35761573 35761649 -9145921 + CT-rich Low_complexity Low_complexity 4 76 0 451 279 51 25 chr21 35762094 35762331 -9145239 - L1MC5 LINE L1 -218 7743 7501 2223 82 0 0 chr21 35762373 35762643 -9144927 + AluSq SINE Alu 30 299 -14 441 294 0 25 chr21 35762654 35762817 -9144753 - L1 LINE L1 -1104 5042 4884 195 129 0 0 chr21 35763047 35763078 -9144492 + (CA)n Simple_repeat Simple_repeat 1 31 0 239 312 48 66 chr21 35763085 35763418 -9144152 - LTR41 LTR ERVL -61 712 386 1211 124 50 15 chr21 35763917 35764118 -9143452 - L1PA14 LINE L1 -3 6158 5951 388 263 50 56 chr21 35764124 35764284 -9143286 - L1ME1 LINE L1 -59 6107 5946 1358 189 138 25 chr21 35764767 35765164 -9142406 + MLT1D LTR MaLR 7 448 -57 379 117 118 35 chr21 35765201 35765286 -9142284 + MLT1D LTR MaLR 349 504 -1 230 317 40 0 chr21 35765293 35765394 -9142176 - L2 LINE L2 -420 2894 2790 1367 152 0 9 chr21 35766144 35766361 -9141209 - AluJb SINE Alu -11 301 87 2358 93 0 17 chr21 35766448 35766713 -9140857 - L1P LINE L1 -2985 3161 2902 2299 218 36 18 chr21 35766713 35767217 -9140353 - LTR10D LTR ERV1 0 513 1 2358 93 0 17 chr21 35767217 35767304 -9140266 - L1P LINE L1 -3244 2902 2815 356 103 0 35 chr21 35767305 35767363 -9140207 + L1PA8 LINE L1 6115 6170 -2 1691 158 58 7 chr21 35767679 35767848 -9139722 - AluJb SINE Alu -6 306 114 423 0 0 0 chr21 35767848 35767895 -9139675 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1691 158 58 7 chr21 35767895 35768016 -9139554 - AluJb SINE Alu -198 114 1 2245 107 0 16 chr21 35768276 35768585 -9138985 - AluSx SINE Alu -8 304 1 271 250 38 92 chr21 35768735 35768919 -9138651 - MER104 DNA Tc2 -1 179 6 788 33 0 0 chr21 35768986 35769076 -9138494 - MER85 DNA T2_type 0 139 50 2122 146 30 11 chr21 35769126 35769568 -9138002 - L1PB1 LINE L1 -120 6031 5511 416 289 88 56 chr21 35769825 35770167 -9137403 - L1M4 LINE L1 -849 5297 4945 2305 125 25 14 chr21 35770258 35770611 -9136959 + MER46B DNA MER2_type 5 236 0 1420 207 111 60 chr21 35770661 35770911 -9136659 - L1MC5 LINE L1 -45 7916 7680 5513 82 5 54 chr21 35770911 35771688 -9135882 - L1PA10 LINE L1 -5 6163 5425 1420 207 111 60 chr21 35771688 35772021 -9135549 - L1MC5 LINE L1 -281 7680 7303 248 298 41 8 chr21 35772070 35772191 -9135379 - L1MC4 LINE L1 -2 8040 7916 823 213 84 18 chr21 35772330 35772555 -9135015 - L1ME2 LINE L1 -10 6154 5915 * 1621 248 32 19 chr21 35772543 35773119 -9134451 + L1ME LINE L1 2324 2904 -3478 510 234 101 0 chr21 35773143 35773331 -9134239 + L1ME LINE L1 3194 3400 -2982 536 186 0 0 chr21 35773332 35773418 -9134152 - AluJ/FLAM SINE Alu -225 87 2 698 238 27 16 chr21 35773433 35773647 -9133923 + L1ME LINE L1 3674 3891 -2491 2774 204 15 45 chr21 35773687 35774358 -9133212 + L1ME LINE L1 4642 5292 -1090 1050 143 15 71 chr21 35774398 35774594 -9132976 + AluJo SINE Alu 126 310 -2 517 268 27 126 chr21 35774604 35775027 -9132543 + L1ME LINE L1 5509 5889 -511 2061 135 13 3 chr21 35775047 35775350 -9132220 + AluSx SINE Alu 1 306 -6 2004 136 0 0 chr21 35775480 35775759 -9131811 - AluJo SINE Alu -33 279 1 290 257 95 19 chr21 35776786 35776891 -9130679 - MIR3 SINE MIR -52 156 44 294 286 24 0 chr21 35777656 35777740 -9129830 + MIR3 SINE MIR 87 172 -36 269 284 108 20 chr21 35777919 35778021 -9129549 + L2 LINE L2 3142 3252 -20 3814 139 61 7 chr21 35778671 35779346 -9128224 - MER50 LTR ERV1 -22 712 2 3563 44 0 5 chr21 35779461 35779918 -9127652 - L1PA7 LINE L1 0 6154 5714 1966 147 0 0 chr21 35779918 35780197 -9127373 - AluSx SINE Alu -33 279 1 320 78 0 0 chr21 35780538 35780589 -9126981 - L1MB5 LINE L1 0 6174 6124 1455 192 126 17 chr21 35781236 35781657 -9125913 + Charlie1b DNA MER1_type 16 482 -41 475 240 109 19 chr21 35781963 35782300 -9125270 + MER89 LTR ERV1 1 469 -90 1517 194 145 10 chr21 35782300 35782701 -9124869 + MLT1C LTR MaLR 1 455 -12 1679 167 17 14 chr21 35783711 35784004 -9123566 - AluJo SINE Alu -18 294 1 1084 145 32 77 chr21 35784020 35784184 -9123386 - AluJo SINE Alu -12 300 147 2528 61 0 0 chr21 35784184 35784479 -9123091 - AluY SINE Alu -16 295 1 1084 145 32 77 chr21 35784479 35784535 -9123035 - AluJo SINE Alu -165 147 90 186 43 0 0 chr21 35785185 35785208 -9122362 + (CAA)n Simple_repeat Simple_repeat 2 24 0 369 326 32 37 chr21 35785455 35785645 -9121925 + MER5A DNA MER1_type 1 189 0 2261 115 14 6 chr21 35786373 35786720 -9120850 - THE1C LTR MaLR 0 375 26 2124 91 6 91 chr21 35786720 35787106 -9120464 + AluSq SINE Alu 1 357 0 279 35 0 0 chr21 35787106 35787145 -9120425 - THE1A LTR MaLR -321 34 1 2209 108 0 7 chr21 35787886 35788181 -9119389 + AluSc SINE Alu 1 293 -16 884 150 94 6 chr21 35788492 35788672 -9118898 - MLT1D LTR MaLR -308 197 2 232 257 0 0 chr21 35788801 35788871 -9118699 - HAL1 LINE L1 -365 2142 2073 461 304 40 15 chr21 35789105 35789306 -9118264 - MLT1G1 LTR MaLR -386 209 4 2234 116 0 16 chr21 35789322 35789632 -9117938 - AluSx SINE Alu -7 305 1 403 292 139 0 chr21 35790508 35790652 -9116918 + MER91B DNA MER1_type 4 167 -23 1531 123 65 4 chr21 35790736 35790997 -9116573 - MLT1B LTR MaLR 0 390 114 1065 162 26 16 chr21 35791004 35791195 -9116375 - AluJo SINE Alu -9 303 111 493 136 0 0 chr21 35791202 35791283 -9116287 - MLT1B LTR MaLR -309 81 1 200 289 58 29 chr21 35793336 35793440 -9114130 + MIR SINE MIR 77 183 -79 21 36 0 0 chr21 35793684 35793712 -9113858 + GC_rich Low_complexity Low_complexity 1 28 0 464 295 57 9 chr21 35794738 35794903 -9112667 - MIR SINE MIR -67 141 4 187 351 45 18 chr21 35795128 35795239 -9112331 + L2 LINE L2 2277 2390 -924 264 164 0 18 chr21 35795345 35795400 -9112170 - MER49 LTR ERV1 0 923 870 1520 87 14 10 chr21 35795415 35795623 -9111947 - AluSg/x SINE Alu -2 310 102 3210 116 138 4 chr21 35795647 35796206 -9111364 - MER51A LTR ERV1 0 634 1 734 164 0 0 chr21 35796206 35796316 -9111254 - FLAM_C SINE Alu -30 113 4 4289 162 34 62 chr21 35796317 35796929 -9110641 - MER49 LTR ERV1 -35 888 309 2746 132 172 35 chr21 35796929 35797469 -9110101 + LTR18B LTR ERVL 1 614 0 4289 162 34 62 chr21 35797469 35797770 -9109800 - MER49 LTR ERV1 -614 309 1 2008 112 3 81 chr21 35797915 35798237 -9109333 - AluSx SINE Alu -15 297 1 2153 144 3 0 chr21 35799675 35799980 -9107590 - AluJb SINE Alu -6 306 1 934 282 40 50 chr21 35800008 35800405 -9107165 - L2 LINE L2 0 3313 2921 978 178 107 71 chr21 35800410 35800473 -9107097 - L1M4 LINE L1 -4998 1544 1485 1925 169 3 0 chr21 35800473 35800769 -9106801 - AluJo SINE Alu -6 306 10 978 178 107 71 chr21 35800769 35800807 -9106763 - L1M4 LINE L1 -5057 1485 1450 1296 242 61 30 chr21 35800807 35801170 -9106400 + MLT1A2 LTR MaLR 1 374 0 978 178 107 71 chr21 35801170 35801405 -9106165 - L1M4 LINE L1 -5092 1450 1195 441 167 14 0 chr21 35801405 35801477 -9106093 + MER2 DNA MER2_type 1 73 -272 235 184 0 0 chr21 35801490 35801528 -9106042 - MER2 DNA MER2_type -25 320 283 951 226 96 17 chr21 35801567 35801859 -9105711 - L1M4 LINE L1 -5346 1196 882 * 1068 250 81 0 chr21 35801849 35802145 -9105425 - L1M4 LINE L1 -6160 382 63 2307 80 3 45 chr21 35802241 35802554 -9105016 - AluSg SINE Alu -10 300 1 2931 134 5 5 chr21 35802779 35803213 -9104357 + MER57B LTR ERV1 1 434 0 2106 84 0 91 chr21 35803269 35803609 -9103961 + AluSc SINE Alu 1 312 0 1009 113 0 0 chr21 35804035 35804168 -9103402 + FLAM_C SINE Alu 1 133 -10 800 184 84 45 chr21 35804713 35804892 -9102678 - MER5A DNA MER1_type 0 189 4 334 267 273 0 chr21 35804956 35805128 -9102442 + MIR SINE MIR 13 231 -31 331 304 59 7 chr21 35805471 35805606 -9101964 + MIR SINE MIR 107 248 -14 2859 199 112 33 chr21 35806259 35806912 -9100658 - MER69 DNA AcHobo -4 2522 1763 1964 152 3 10 chr21 35806912 35807214 -9100356 - AluJb SINE Alu -12 300 1 2859 199 112 33 chr21 35807214 35807554 -9100016 - MER69 DNA AcHobo -763 1763 1451 1244 241 11 15 chr21 35807608 35807882 -9099688 - AluJo SINE Alu -39 273 1 955 266 59 0 chr21 35808169 35808425 -9099145 - MER69 DNA AcHobo -793 433 163 820 293 32 50 chr21 35808425 35808969 -9098601 - L1MCc LINE L1 -4890 1533 1343 2152 119 14 0 chr21 35808969 35809264 -9098306 - AluSc SINE Alu -10 299 1 820 293 32 50 chr21 35809264 35809485 -9098085 - L1MCc LINE L1 -5080 1343 1119 271 317 43 12 chr21 35809821 35809982 -9097588 - L1MCc LINE L1 -6239 184 19 1839 150 9 32 chr21 35811268 35811608 -9095962 + MLT1B LTR MaLR 1 332 -58 2437 76 3 25 chr21 35811608 35811925 -9095645 + AluY SINE Alu 1 310 -1 391 333 104 0 chr21 35812194 35812386 -9095184 + MIR SINE MIR 51 262 0 321 250 152 0 chr21 35812979 35813071 -9094499 - L1MC4 LINE L1 -9 8033 7928 395 251 120 52 chr21 35813218 35813409 -9094161 - L1M4 LINE L1 -374 5804 5601 399 257 66 26 chr21 35813411 35813649 -9093921 - L1M4 LINE L1 -590 5574 5318 1889 158 27 3 chr21 35813649 35813947 -9093623 - AluJb SINE Alu -7 305 1 399 257 66 26 chr21 35813947 35814075 -9093495 - L1M4 LINE L1 -846 5318 5197 990 254 86 48 chr21 35814103 35814482 -9093088 - L1ME3A LINE L1 -24 6146 5745 2014 141 0 0 chr21 35814482 35814799 -9092771 + AluSx SINE Alu 5 321 0 990 254 86 48 chr21 35814799 35814874 -9092696 - L1ME3A LINE L1 -425 5745 5674 432 321 50 14 chr21 35814942 35815160 -9092410 + LTR16A LTR ERVL 66 291 -159 2342 243 122 19 chr21 35815228 35816259 -9091311 - L1M4 LINE L1 -2316 3830 2694 2040 87 87 14 chr21 35816464 35816753 -9090817 - AluSg SINE Alu 0 310 1 1420 184 19 0 chr21 35816774 35817040 -9090530 - L1PB4 LINE L1 -2 6154 5884 531 268 30 12 chr21 35817504 35817672 -9089898 - L2 LINE L2 0 3313 3143 630 238 24 0 chr21 35817673 35817837 -9089733 - MLT1C LTR MaLR -6 461 294 3342 119 23 12 chr21 35817868 35818866 -9088704 - HERVH LTR ERV1 -2228 4426 3492 865 122 27 0 chr21 35818856 35819003 -9088567 - HERVH LTR ERV1 -4423 3290 3140 * 15275 94 9 19 chr21 35818997 35819355 -9088215 - HERVH LTR ERV1 -4726 2987 2627 2550 7 0 0 chr21 35819355 35819627 -9087943 + AluYa5 SINE Alu 39 310 -1 15275 94 9 19 chr21 35819627 35822036 -9085534 - HERVH LTR ERV1 -5086 2627 1 2775 87 92 5 chr21 35822039 35822451 -9085119 - LTR7 LTR ERV1 -2 448 1 460 133 133 0 chr21 35822465 35822563 -9085007 - MLT1C LTR MaLR -356 111 1 1358 182 89 32 chr21 35822933 35823066 -9084504 - AluJo SINE Alu -11 301 177 2380 132 22 0 chr21 35823066 35823431 -9084139 + MER83C LTR ERV1 1 373 0 1358 182 89 32 chr21 35823431 35823577 -9083993 - AluJo SINE Alu -135 177 6 2632 144 42 62 chr21 35824874 35825423 -9082147 + MER4B LTR ERV1 2 539 -71 4963 40 2 18 chr21 35826456 35827011 -9080559 + LTR10C LTR ERV1 1 547 -44 2351 91 3 3 chr21 35827011 35827320 -9080250 - AluY SINE Alu -2 309 1 4963 40 2 18 chr21 35827320 35827365 -9080205 + LTR10C LTR ERV1 547 591 0 2556 116 11 6 chr21 35827663 35828025 -9079545 - THE1B LTR MaLR 0 364 1 4390 136 45 9 chr21 35828827 35829562 -9078008 + Tigger2 DNA MER2_type 1 761 -1957 1010 138 134 71 chr21 35829616 35829855 -9077715 + Tigger2 DNA MER2_type 2455 2708 -10 705 231 73 18 chr21 35829863 35830276 -9077294 - MLT1D LTR MaLR -40 465 2 360 234 37 19 chr21 35830754 35830861 -9076709 - MLT2E LTR ERVL -488 140 32 278 268 21 31 chr21 35831121 35831218 -9076352 + CT-rich Low_complexity Low_complexity 2 97 0 1665 313 81 38 chr21 35831380 35832453 -9075117 - HERVL LTR ERVL -749 4905 3787 2200 190 14 16 chr21 35832526 35832957 -9074613 + MER63B DNA MER1_type 7 436 0 552 239 75 79 chr21 35832957 35833275 -9074295 - HERVL LTR ERVL -1946 3708 3392 340 316 89 0 chr21 35833589 35833747 -9073823 + MIR SINE MIR 84 255 -7 768 200 0 0 chr21 35834786 35834961 -9072609 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 807 192 0 0 chr21 35834986 35835163 -9072407 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 792 210 0 0 chr21 35835182 35835616 -9071954 + (TCCA)n Simple_repeat Simple_repeat 1 434 0 241 369 62 8 chr21 35835616 35835746 -9071824 - L2 LINE L2 0 3272 3136 259 250 17 0 chr21 35837036 35837152 -9070418 + GA-rich Low_complexity Low_complexity 1 118 0 180 0 0 0 chr21 35837406 35837426 -9070144 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr21 35837426 35837450 -9070120 + AT_rich Low_complexity Low_complexity 1 24 0 805 161 0 0 chr21 35838282 35838394 -9069176 - FLAM_C SINE Alu -25 118 7 9215 202 52 28 chr21 35840204 35840315 -9067255 + L1MC1 LINE L1 2667 2774 -3559 1894 113 0 0 chr21 35840315 35840563 -9067007 + AluSx SINE Alu 57 304 -8 9215 202 52 28 chr21 35840563 35844024 -9063546 + L1MC1 LINE L1 2774 6326 -7 692 211 0 4 chr21 35844302 35844773 -9062797 + (TG)n Simple_repeat Simple_repeat 1 468 0 1343 14 0 0 chr21 35845184 35845332 -9062238 - AluYb8 SINE Alu -1 317 170 246 62 0 0 chr21 35846527 35846559 -9061011 + (TA)n Simple_repeat Simple_repeat 2 33 0 952 107 17 17 chr21 35846928 35847105 -9060465 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 435 38 0 0 chr21 35847107 35847160 -9060410 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 2012 139 3 7 chr21 35847160 35847462 -9060108 - AluSx SINE Alu -11 301 1 1727 181 19 13 chr21 35850178 35850487 -9057083 - MER58B DNA MER1_type 0 341 31 198 295 128 20 chr21 35850559 35850708 -9056862 + MIR SINE MIR 47 211 -51 348 83 0 0 chr21 35853543 35853591 -9053979 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 192 125 0 0 chr21 35854404 35854436 -9053134 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 209 210 48 0 chr21 35854997 35855059 -9052511 + GA-rich Low_complexity Low_complexity 2 66 0 2064 134 3 13 chr21 35856070 35856376 -9051194 - AluSx SINE Alu -9 303 1 267 323 0 0 chr21 35856388 35856453 -9051117 + MER91B DNA MER1_type 126 190 0 707 147 35 0 chr21 35856657 35856773 -9050797 - ORSL DNA AcHobo 0 275 156 5692 203 34 11 chr21 35857523 35859022 -9048548 + L1M4 LINE L1 503 2035 -4611 289 143 0 0 chr21 35859022 35859064 -9048506 - 5S rRNA rRNA -79 42 1 275 205 71 71 chr21 35859064 35859176 -9048394 + L1M4 LINE L1 2025 2136 -4510 2356 133 29 16 chr21 35859320 35859705 -9047865 + MLT1B LTR MaLR 1 390 0 216 0 0 0 chr21 35860077 35860101 -9047469 + (TG)n Simple_repeat Simple_repeat 1 24 0 266 355 73 8 chr21 35860258 35860382 -9047188 + L2 LINE L2 3136 3267 -5 1062 155 41 0 chr21 35860601 35860795 -9046775 - L1MA8 LINE L1 -12 6279 6078 279 314 89 24 chr21 35861020 35861144 -9046426 + L2 LINE L2 3136 3267 -5 327 304 66 78 chr21 35861375 35861707 -9045863 + L1ME3 LINE L1 2 329 -6211 272 238 0 16 chr21 35862067 35862130 -9045440 + L1ME3 LINE L1 789 850 -5680 2787 277 88 35 chr21 35862162 35863973 -9043597 + L1ME3 LINE L1 3209 5115 -1425 333 289 121 23 chr21 35864008 35864050 -9043520 + L1ME3 LINE L1 6061 6097 -459 2219 146 82 15 chr21 35864050 35864455 -9043115 + MSTB1 LTR MaLR 1 432 0 333 289 121 23 chr21 35864455 35864668 -9042902 + L1ME3 LINE L1 6097 6341 -215 2037 129 10 0 chr21 35864704 35864998 -9042572 - AluSx SINE Alu -15 297 1 2158 125 3 0 chr21 35865155 35865460 -9042110 - AluSx SINE Alu -6 306 1 1860 167 3 3 chr21 35865465 35865759 -9041811 - AluJb SINE Alu -18 294 1 1779 178 25 9 chr21 35865966 35866281 -9041289 - MLT2B2 LTR ERVL -190 325 6 520 342 60 17 chr21 35867445 35867600 -9039970 - MIR SINE MIR -13 249 79 1198 204 114 57 chr21 35867600 35867967 -9039603 + MLT1B LTR MaLR 1 388 -2 520 342 60 17 chr21 35867967 35868045 -9039525 - MIR SINE MIR -183 79 6 2228 121 0 0 chr21 35868092 35868389 -9039181 - AluSx SINE Alu -15 297 1 336 274 72 20 chr21 35868716 35868869 -9038701 - L1MC4a LINE L1 -1233 6575 6415 295 234 124 41 chr21 35869092 35869237 -9038333 + MER89 LTR ERV1 374 530 -29 727 226 146 64 chr21 35869329 35869629 -9037941 - L1MC4a LINE L1 -1473 6335 5996 2021 123 181 8 chr21 35869629 35869994 -9037576 + MSTA LTR MaLR 1 428 0 727 226 146 64 chr21 35869994 35870070 -9037500 - L1MC4a LINE L1 -1812 5996 5928 349 240 105 29 chr21 35870212 35870383 -9037187 + MIR SINE MIR 35 218 -44 316 192 27 41 chr21 35870724 35870797 -9036773 - Charlie4 DNA MER1_type -4 1957 1886 230 300 73 67 chr21 35871069 35871219 -9036351 + L2 LINE L2 3121 3271 -1 416 296 138 46 chr21 35871242 35871678 -9035892 - L2 LINE L2 0 3313 2838 * 693 360 67 21 chr21 35871675 35872442 -9035128 - L2 LINE L2 -612 2702 1901 4216 89 2 0 chr21 35873769 35874333 -9033237 + L1PA13 LINE L1 5595 6159 -4 1523 177 57 23 chr21 35875035 35875335 -9032235 + AluJb SINE Alu 1 310 -2 22 56 0 0 chr21 35876156 35876192 -9031378 + AT_rich Low_complexity Low_complexity 1 36 0 2403 55 3 19 chr21 35876603 35876915 -9030655 - AluY SINE Alu -4 307 1 1814 208 83 35 chr21 35877341 35877798 -9029772 + MER74A LTR ERVL 1 479 -79 2229 109 0 3 chr21 35878792 35879105 -9028465 + AluSx SINE Alu 1 312 0 2040 67 0 39 chr21 35879721 35880005 -9027565 - AluY SINE Alu -38 273 1 430 319 71 31 chr21 35880203 35880429 -9027141 + MIR SINE MIR 14 248 -14 1582 297 89 101 chr21 35881202 35882551 -9025019 - L2 LINE L2 -456 2858 1539 456 288 27 0 chr21 35882551 35882662 -9024908 + MER81 DNA DNA 1 114 0 1582 297 89 101 chr21 35882662 35883252 -9024318 - L2 LINE L2 -1775 1539 943 189 0 0 0 chr21 35884048 35884069 -9023501 + (T)n Simple_repeat Simple_repeat 1 21 0 225 309 59 59 chr21 35884627 35884763 -9022807 - MIR3 SINE MIR -65 143 8 303 298 26 0 chr21 35884963 35885077 -9022493 + MLT1K LTR MaLR 364 480 -108 414 0 0 0 chr21 35885122 35885168 -9022402 + (TG)n Simple_repeat Simple_repeat 1 46 0 * 549 0 0 0 chr21 35885167 35885228 -9022342 + (GA)n Simple_repeat Simple_repeat 1 61 0 479 270 59 7 chr21 35887008 35887160 -9020410 + MER115 DNA AcHobo 80 239 -454 251 182 36 0 chr21 35887299 35887354 -9020216 + Zaphod DNA AcHobo 3975 4031 0 353 302 114 7 chr21 35888663 35888812 -9018758 - MIR3 SINE MIR -28 180 16 202 325 0 13 chr21 35889433 35889510 -9018060 + GA-rich Low_complexity Low_complexity 5 80 0 228 307 109 35 chr21 35889803 35890005 -9017565 + L1MEd LINE L1 4 220 -5899 967 253 138 110 chr21 35890109 35891008 -9016562 + Charlie2b DNA MER1_type 122 1045 -1737 * 1707 225 68 66 chr21 35891006 35891557 -9016013 + Charlie2a DNA MER1_type 1698 2252 -610 2264 61 3 22 chr21 35891557 35891870 -9015700 - AluY SINE Alu -4 307 1 1707 225 68 66 chr21 35891870 35892029 -9015541 + Charlie2a DNA MER1_type 2252 2409 -453 6468 74 7 13 chr21 35892034 35892910 -9014660 - L1PA10 LINE L1 0 6168 5298 1667 202 42 9 chr21 35892920 35893351 -9014219 + Charlie2a DNA MER1_type 2418 2862 0 1699 289 87 24 chr21 35893372 35894702 -9012868 + L1M4 LINE L1 2168 3580 -2566 2366 70 3 3 chr21 35894735 35895037 -9012533 - AluY SINE Alu -8 303 2 315 306 12 82 chr21 35895042 35895212 -9012358 + MIR SINE MIR 105 262 0 396 307 7 22 chr21 35896351 35896488 -9011082 + MIR SINE MIR 61 195 -67 4022 80 43 48 chr21 35896488 35897114 -9010456 + SVA Other Other 764 1386 0 674 207 13 27 chr21 35897635 35897785 -9009785 - MER20 DNA MER1_type -71 148 1 215 301 138 16 chr21 35897898 35898021 -9009549 - MER5B DNA MER1_type -40 138 1 1487 140 12 23 chr21 35898308 35898565 -9009005 - MLT1B LTR MaLR -136 254 1 3530 159 25 35 chr21 35898740 35899389 -9008181 + MER4E LTR ERV1 138 779 0 275 0 29 0 chr21 35899511 35899546 -9008024 + (TG)n Simple_repeat Simple_repeat 1 36 0 3243 231 22 28 chr21 35899727 35900425 -9007145 - L1M4 LINE L1 -908 5238 4545 1839 174 0 0 chr21 35900425 35900735 -9006835 + AluJb SINE Alu 1 310 -2 3243 231 22 28 chr21 35900735 35900945 -9006625 - L1M4 LINE L1 -1601 4545 4335 4572 179 10 17 chr21 35900945 35901765 -9005805 + MER21B LTR ERV1 1 814 -49 764 230 20 0 chr21 35901812 35902012 -9005558 - L1M4 LINE L1 -1807 4339 4136 426 305 57 92 chr21 35902012 35902501 -9005069 + MLT1K LTR MaLR 75 546 -42 182 36 0 36 chr21 35902679 35902707 -9004863 + (TTCCC)n Simple_repeat Simple_repeat 3 29 0 1151 209 0 0 chr21 35902709 35902934 -9004636 - AluJo SINE Alu 0 312 88 189 167 21 21 chr21 35903788 35903836 -9003734 - MER5B DNA MER1_type 0 178 131 671 287 149 10 chr21 35904063 35904177 -9003393 + L2 LINE L2 2540 2637 -676 563 208 9 0 chr21 35904177 35904283 -9003287 - MER81 DNA DNA -4 110 4 671 287 149 10 chr21 35904283 35904818 -9002752 + L2 LINE L2 2637 3293 -20 323 60 20 0 chr21 35904822 35904872 -9002698 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr21 35905808 35905836 -9001734 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 211 241 205 0 chr21 35905889 35905972 -9001598 + MER5A DNA MER1_type 6 105 -84 877 204 50 0 chr21 35906607 35906808 -9000762 + MER20 DNA MER1_type 6 216 -3 216 200 0 0 chr21 35907421 35907466 -9000104 + CT-rich Low_complexity Low_complexity 3 47 0 490 251 0 8 chr21 35907632 35907883 -8999687 + (TCCA)n Simple_repeat Simple_repeat 1 248 0 234 333 21 73 chr21 35907932 35908124 -8999446 - L2 LINE L2 -92 3180 2999 507 187 0 0 chr21 35908549 35908656 -8998914 + (TGGA)n Simple_repeat Simple_repeat 3 109 0 194 339 15 0 chr21 35908730 35908795 -8998775 + MIR SINE MIR 12 77 -185 2653 174 130 0 chr21 35908799 35909293 -8998277 + MLT1F1 LTR MaLR 10 567 0 818 242 6 16 chr21 35909295 35909477 -8998093 + MIR SINE MIR 79 258 -4 1272 184 197 83 chr21 35910379 35910846 -8996724 + MLT2B1 LTR ERVL 1 520 0 723 233 125 0 chr21 35912059 35912235 -8995335 - MLT1D LTR MaLR 0 505 308 676 207 107 77 chr21 35912431 35912692 -8994878 - MLT1D LTR MaLR -198 269 1 217 328 0 0 chr21 35913375 35913436 -8994134 + CT-rich Low_complexity Low_complexity 3 63 0 2366 160 38 33 chr21 35914011 35914462 -8993108 - MLT1C LTR MaLR 0 467 15 579 282 135 35 chr21 35914728 35915343 -8992227 + L1ME LINE L1 4997 5686 -435 2288 78 3 3 chr21 35915343 35915652 -8991918 + AluY SINE Alu 1 309 -2 579 282 135 35 chr21 35915652 35915801 -8991769 + L1ME LINE L1 5686 5819 -302 2377 75 3 0 chr21 35916404 35916710 -8990860 - AluSx SINE Alu -5 307 1 198 118 0 0 chr21 35916953 35916987 -8990583 - MIR SINE MIR -76 132 99 263 381 102 5 chr21 35918332 35918529 -8989041 - MIR SINE MIR -27 235 20 2065 122 0 13 chr21 35920713 35921024 -8986546 - AluSg1 SINE Alu -2 307 1 1165 70 0 6 chr21 35922014 35922170 -8985400 + L1PA8 LINE L1 6018 6172 0 878 222 112 70 chr21 35924631 35925005 -8982565 + MLT1B LTR MaLR 1 390 0 4127 206 97 22 chr21 35925691 35926769 -8980801 + L1MC4 LINE L1 6760 7918 -124 982 149 0 12 chr21 35928474 35928642 -8978928 - AluJo/FRAM SINE Alu -13 299 134 1907 143 0 7 chr21 35928642 35928942 -8978628 - AluSx SINE Alu -14 298 1 437 137 125 16 chr21 35928944 35929112 -8978458 + MER58B DNA MER1_type 79 325 -16 222 263 253 0 chr21 35929112 35929207 -8978363 + L2 LINE L2 3168 3286 -27 344 341 136 31 chr21 35929996 35930319 -8977251 - L2 LINE L2 -20 3252 2896 575 343 75 38 chr21 35930421 35930670 -8976900 - L2 LINE L2 -560 2754 2516 642 220 92 6 chr21 35930670 35930843 -8976727 + MER91B DNA MER1_type 1 188 -2 575 343 75 38 chr21 35930843 35931260 -8976310 - L2 LINE L2 -798 2516 2063 541 304 175 0 chr21 35931448 35931688 -8975882 - L2 LINE L2 -1 3312 3031 1956 303 140 47 chr21 35931706 35931893 -8975677 - L2 LINE L2 -422 2892 2724 2379 86 0 0 chr21 35931893 35932197 -8975373 + AluSx SINE Alu 1 304 -8 1956 303 140 47 chr21 35932197 35933483 -8974087 - L2 LINE L2 -590 2724 1282 246 62 0 0 chr21 35934597 35934629 -8972941 + (CAT)n Simple_repeat Simple_repeat 3 34 0 581 296 19 75 chr21 35935193 35935433 -8972137 + MIR SINE MIR 24 258 -4 409 330 82 29 chr21 35935474 35935680 -8971890 - MIR SINE MIR -13 249 33 641 276 99 34 chr21 35935818 35936202 -8971368 - MLT1I LTR MaLR 0 409 1 558 269 240 14 chr21 35936323 35936606 -8970964 + MLT1I LTR MaLR 63 409 0 358 200 14 0 chr21 35937360 35937430 -8970140 - MIR SINE MIR -92 170 100 2083 88 3 11 chr21 35939172 35939484 -8968086 + AluSp SINE Alu 1 310 0 305 299 205 0 chr21 35939600 35939727 -8967843 + MIR3 SINE MIR 54 206 -2 1327 206 76 44 chr21 35939982 35940418 -8967152 + L1MC5 LINE L1 7451 7900 -61 238 167 60 0 chr21 35942384 35942468 -8965102 + CT-rich Low_complexity Low_complexity 1 89 0 500 175 53 6 chr21 35942482 35942653 -8964917 + CT-rich Low_complexity Low_complexity 1 179 0 215 187 11 55 chr21 35942633 35942724 -8964846 + C-rich Low_complexity Low_complexity 4 90 0 * 1877 159 47 31 chr21 35945503 35945887 -8961683 + MLT1B LTR MaLR 1 390 0 351 287 139 0 chr21 35945905 35946027 -8961543 + MIR SINE MIR 114 252 -10 1601 157 7 17 chr21 35946323 35946616 -8960954 - AluJo SINE Alu -12 300 11 289 235 97 18 chr21 35947995 35948146 -8959424 + MLT1J2 LTR MaLR 44 249 -262 1974 71 16 0 chr21 35948517 35948772 -8958798 + L1PA6 LINE L1 5896 6154 0 409 206 61 55 chr21 35949977 35950142 -8957428 + L1ME4a LINE L1 5956 6121 0 3711 149 23 14 chr21 35950612 35950636 -8956934 + L1MB4 LINE L1 5203 5225 -955 2804 10 0 0 chr21 35950636 35950950 -8956620 - AluYb8 SINE Alu -4 314 1 3711 149 23 14 chr21 35950950 35951625 -8955945 + L1MB4 LINE L1 5225 5906 -274 265 31 0 0 chr21 35951627 35951659 -8955911 + L1M3 LINE L1 5818 5849 -331 5811 162 32 6 chr21 35951869 35953862 -8953708 + L1PA16 LINE L1 4119 6155 -11 288 146 42 156 chr21 35954168 35954264 -8953306 - MER58 DNA MER1_type 0 2420 131 276 309 65 29 chr21 35954567 35954706 -8952864 - L2 LINE L2 -925 2389 2246 319 324 107 20 chr21 35954753 35954997 -8952573 + L1ME4a LINE L1 4918 5182 -964 593 282 84 40 chr21 35955063 35955113 -8952457 + L1ME4a LINE L1 5315 5361 -760 1702 113 0 0 chr21 35955113 35955343 -8952227 + AluSg SINE Alu 58 287 -23 593 282 84 40 chr21 35955343 35955787 -8951783 + L1ME4a LINE L1 5361 5831 -290 516 312 35 61 chr21 35955799 35955840 -8951730 + L2 LINE L2 3008 3049 -264 2194 113 0 0 chr21 35955840 35956149 -8951421 - AluSq SINE Alu -4 309 1 516 312 35 61 chr21 35956149 35956418 -8951152 + L2 LINE L2 3049 3310 -3 337 299 76 64 chr21 35956423 35956674 -8950896 + L1ME4a LINE L1 5835 6088 -33 313 242 166 40 chr21 35956738 35956798 -8950772 - L2 LINE L2 -1343 1971 1920 1330 216 101 34 chr21 35956798 35957234 -8950336 + MLT1C LTR MaLR 1 465 -2 313 242 166 40 chr21 35957234 35957396 -8950174 - L2 LINE L2 -1394 1920 1721 213 154 0 0 chr21 35957402 35957441 -8950129 + (TG)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr21 35957838 35957859 -8949711 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2790 142 44 2 chr21 35957935 35958414 -8949156 + L1MB3 LINE L1 5682 6180 -3 228 205 0 0 chr21 35958621 35958660 -8948910 + (TG)n Simple_repeat Simple_repeat 1 39 0 1828 151 0 0 chr21 35959289 35959567 -8948003 - AluJo SINE Alu -34 278 1 636 295 26 10 chr21 35959638 35959831 -8947739 + MER91A DNA MER1_type 1 196 0 314 236 128 81 chr21 35959833 35959981 -8947589 - MIR3 SINE MIR -36 172 18 307 299 174 22 chr21 35960089 35960273 -8947297 + MIR SINE MIR 23 234 -28 378 326 112 10 chr21 35960282 35960478 -8947092 + MIR SINE MIR 46 261 -1 307 326 227 6 chr21 35960804 35960976 -8946594 - MIR SINE MIR -3 259 50 303 104 0 0 chr21 35961044 35961092 -8946478 + (TG)n Simple_repeat Simple_repeat 2 49 0 408 208 201 50 chr21 35961395 35961554 -8946016 - MIR SINE MIR -10 252 70 475 248 68 43 chr21 35964428 35964589 -8942981 + MER63A DNA MER1_type 46 210 0 365 279 62 0 chr21 35964691 35964820 -8942750 - MER103 DNA DNA -19 147 11 339 280 50 0 chr21 35966097 35966197 -8941373 - L2 LINE L2 -16 3256 3152 763 193 0 0 chr21 35966297 35966442 -8941128 + L1MB5 LINE L1 5999 6143 -31 226 364 91 0 chr21 35967660 35967759 -8939811 + MER91A DNA MER1_type 89 196 0 1082 206 98 3 chr21 35968966 35969262 -8938308 + MER33 DNA MER1_type 1 324 0 28 29 0 0 chr21 35969796 35969831 -8937739 + AT_rich Low_complexity Low_complexity 1 35 0 2835 115 42 40 chr21 35970076 35970671 -8936899 + MER4B LTR ERV1 1 779 0 537 311 40 43 chr21 35970825 35971150 -8936420 + L2 LINE L2 2033 2356 -958 583 303 29 0 chr21 35971171 35971346 -8936224 + LTR33 LTR ERVL 1 180 -341 2568 187 67 4 chr21 35971830 35972353 -8935217 - MER89 LTR ERV1 0 559 4 361 261 76 20 chr21 35972387 35972559 -8935011 - HAL1b LINE L1 0 6121 1198 253 344 49 31 chr21 35972595 35972758 -8934812 + L2 LINE L2 2594 2759 -555 276 334 80 60 chr21 35972869 35973219 -8934351 + L2 LINE L2 2914 3270 -2 264 167 0 0 chr21 35973242 35973290 -8934280 + (TG)n Simple_repeat Simple_repeat 1 48 0 1675 186 73 37 chr21 35973345 35973727 -8933843 + MSTD LTR MaLR 1 396 0 2387 19 0 0 chr21 35973995 35974266 -8933304 + L1PA4 LINE L1 5882 6152 -3 1394 210 97 64 chr21 35974793 35975024 -8932546 + MLT1D LTR MaLR 1 223 -282 1520 175 16 22 chr21 35975024 35975217 -8932353 - AluJb SINE Alu 0 312 120 195 69 0 0 chr21 35975217 35975246 -8932324 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1520 175 16 22 chr21 35975246 35975366 -8932204 - AluJb SINE Alu -192 120 1 1394 210 97 64 chr21 35975366 35975619 -8931951 + MLT1D LTR MaLR 223 501 -4 498 244 74 15 chr21 35975638 35975773 -8931797 - L2 LINE L2 -3 3269 3127 1438 223 75 12 chr21 35975815 35976160 -8931410 - MLT1A2 LTR MaLR -7 367 1 197 366 20 10 chr21 35976424 35976525 -8931045 - MIR SINE MIR -73 189 88 347 185 15 0 chr21 35976638 35976703 -8930867 + L2 LINE L2 3207 3272 0 1729 200 44 42 chr21 35977421 35977876 -8929694 + MLT1D LTR MaLR 50 505 0 206 207 17 0 chr21 35978947 35979005 -8928565 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 6625 45 2 2 chr21 35980030 35980831 -8926739 + L1PA7 LINE L1 5350 6150 -4 298 309 29 86 chr21 35981734 35981873 -8925697 + L2 LINE L2 3142 3272 0 196 246 138 0 chr21 35987735 35987800 -8919770 - MIR SINE MIR -105 103 30 371 268 156 17 chr21 35988362 35988541 -8919029 + MER63A DNA MER1_type 1 204 -6 1582 146 32 7 chr21 35988589 35988869 -8918701 - AluJo SINE Alu -20 292 6 219 293 179 9 chr21 35988884 35988990 -8918580 - MIR SINE MIR -121 141 18 191 329 85 29 chr21 35989382 35989628 -8917942 + L2 LINE L2 2858 3117 -196 1791 234 64 22 chr21 35989675 35990219 -8917351 + MLT1F1 LTR MaLR 1 567 0 506 300 114 0 chr21 35990226 35990366 -8917204 - MIR SINE MIR -102 160 5 560 116 46 29 chr21 35991044 35991217 -8916353 + (TG)n Simple_repeat Simple_repeat 1 176 0 644 122 39 24 chr21 35991239 35991737 -8915833 + (TG)n Simple_repeat Simple_repeat 1 505 0 531 316 6 11 chr21 35992686 35992860 -8914710 + MER5B DNA MER1_type 3 175 -3 907 54 0 0 chr21 35993636 35993748 -8913822 - L1PA5 LINE L1 -175 5979 5868 1220 56 0 12 chr21 35993748 35993908 -8913662 + L1PA5 LINE L1 5996 6154 0 2077 116 10 0 chr21 35994327 35994621 -8912949 - AluSx SINE Alu -15 297 1 2815 182 125 66 chr21 35994899 35995302 -8912268 - MER63C DNA MER1_type -130 930 552 1083 159 13 69 chr21 35995302 35995534 -8912036 + MER20 DNA MER1_type 1 219 0 2815 182 125 66 chr21 35995534 35996007 -8911563 - MER63C DNA MER1_type -508 552 2 2087 150 9 35 chr21 35996649 35996995 -8910575 + MER1B DNA MER1_type 1 337 0 305 306 56 9 chr21 35997309 35997417 -8910153 - MIR3 SINE MIR -6 202 90 239 200 0 0 chr21 35997532 35997572 -8909998 + MER20 DNA MER1_type 180 219 0 550 158 87 16 chr21 35997573 35997700 -8909870 - MER63 DNA MER1_type -406 654 519 21 0 0 0 chr21 35997985 35998006 -8909564 + AT_rich Low_complexity Low_complexity 1 21 0 312 27 0 0 chr21 35999356 35999393 -8908177 + (TTA)n Simple_repeat Simple_repeat 3 39 0 259 170 0 0 chr21 35999571 35999624 -8907946 + ERVL-C1 LTR ERVL 562 614 -5150 1294 184 46 115 chr21 35999624 36000016 -8907554 + MLT1A1 LTR MaLR 1 365 0 850 237 98 21 chr21 36000099 36000335 -8907235 + ERVL-C1 LTR ERVL 767 1020 -4744 2747 214 58 36 chr21 36000338 36001090 -8906480 + ERVL-C1 LTR ERVL 4990 5758 -6 1291 238 41 56 chr21 36001098 36001489 -8906081 + MLT2C1 LTR ERVL 13 397 0 312 284 101 0 chr21 36001766 36001914 -8905656 + MER103 DNA DNA 3 165 -1 288 227 67 0 chr21 36003224 36003299 -8904271 + MIR SINE MIR 49 128 -80 202 311 82 0 chr21 36003298 36003359 -8904211 + L2 LINE L2 3167 3232 -40 * 619 250 163 0 chr21 36004065 36004225 -8903345 + MIR SINE MIR 6 191 -71 18295 31 2 1 chr21 36004292 36007224 -8900346 - L1PA4 LINE L1 0 6155 3220 305 133 0 67 chr21 36008378 36008438 -8899132 + L1ME4a LINE L1 6050 6105 -16 305 80 0 20 chr21 36008616 36008666 -8898904 + (TG)n Simple_repeat Simple_repeat 2 50 0 616 219 49 6 chr21 36008990 36009154 -8898416 - MER96B DNA MER1_type? -238 179 9 203 229 0 0 chr21 36009234 36009269 -8898301 + L2 LINE L2 3141 3175 -97 3009 133 9 57 chr21 36010048 36010614 -8896956 + L1MC2 LINE L1 5791 6329 -15 1351 79 0 11 chr21 36010633 36010823 -8896747 + L1MA2 LINE L1 6117 6304 0 24 32 0 0 chr21 36010823 36010854 -8896716 + AT_rich Low_complexity Low_complexity 1 31 0 543 281 64 6 chr21 36011508 36011679 -8895891 - MIR SINE MIR -1 261 81 2108 209 45 12 chr21 36011841 36012324 -8895246 + MLT1D LTR MaLR 4 502 -3 508 190 9 52 chr21 36012746 36012862 -8894708 - MER94 DNA DNA -23 111 1 342 313 112 22 chr21 36012984 36013118 -8894452 - MIR3 SINE MIR -41 167 22 2388 126 9 3 chr21 36013199 36013549 -8894021 + THE1A LTR MaLR 4 355 0 1209 228 58 68 chr21 36013633 36014027 -8893543 + MLT1B LTR MaLR 1 390 0 383 169 135 0 chr21 36014379 36014468 -8893102 + MLT1C LTR MaLR 6 106 -361 341 300 114 0 chr21 36015523 36015663 -8891907 - MIR SINE MIR 0 262 107 1615 217 38 6 chr21 36015665 36016006 -8891564 + MLT1A1 LTR MaLR 1 352 -13 256 296 0 56 chr21 36016022 36016130 -8891440 - MER117 DNA MER1_type -92 105 4 403 307 144 19 chr21 36016601 36016816 -8890754 + MIR SINE MIR 7 248 -14 1159 203 194 40 chr21 36018408 36018845 -8888725 + MLT1H LTR MaLR 12 547 -2 232 217 0 22 chr21 36018999 36019045 -8888525 + MLT1J LTR MaLR 109 153 -358 1555 223 62 8 chr21 36019161 36019529 -8888041 + MLT1B LTR MaLR 3 390 0 326 333 61 24 chr21 36019534 36019747 -8887823 + MLT1L LTR MaLR 387 607 -8 803 262 9 24 chr21 36020326 36020557 -8887013 - MIR SINE MIR 0 262 37 838 194 0 0 chr21 36021731 36021901 -8885669 - L1MA4 LINE L1 -2 6298 6129 326 286 69 34 chr21 36022512 36022688 -8884882 - MIR SINE MIR -13 249 55 538 116 0 0 chr21 36023431 36023517 -8884053 + AluS SINE Alu 222 307 -2 313 328 139 20 chr21 36023540 36023741 -8883829 - MIR SINE MIR -24 238 14 376 208 0 0 chr21 36023921 36023998 -8883572 + MER112 DNA MER1_type 8 84 -176 189 195 0 0 chr21 36023998 36024039 -8883531 + (TG)n Simple_repeat Simple_repeat 1 41 0 234 224 112 52 chr21 36024045 36024161 -8883409 + MER112 DNA MER1_type 90 212 -48 895 245 23 31 chr21 36024196 36024453 -8883117 + MIR SINE MIR 6 260 -2 2394 56 17 3 chr21 36024544 36024846 -8882724 + L1PA8 LINE L1 5867 6172 0 2130 92 37 0 chr21 36025406 36025701 -8881869 + AluSq SINE Alu 1 306 -7 362 136 62 37 chr21 36025791 36025872 -8881698 - MIR SINE MIR -96 166 84 194 322 56 0 chr21 36026450 36026540 -8881030 + MIR3 SINE MIR 106 200 -8 2545 17 0 0 chr21 36026719 36027010 -8880560 - AluYb8 SINE Alu -1 317 27 1710 143 45 11 chr21 36027010 36027295 -8880275 - AluSx SINE Alu -15 297 1 269 281 24 0 chr21 36027721 36027803 -8879767 + MLT1L LTR MaLR 328 411 -204 440 341 44 19 chr21 36027996 36028201 -8879369 - MIR SINE MIR -29 233 24 2212 189 81 4 chr21 36028384 36028866 -8878704 + L1MB8 LINE L1 5649 6167 -11 2376 104 15 6 chr21 36028867 36029202 -8878368 - L1PA13 LINE L1 -7 6156 5819 234 262 49 16 chr21 36031909 36031970 -8875600 - MIR SINE MIR -89 119 57 1634 214 97 31 chr21 36032210 36032622 -8874948 + MLT1D LTR MaLR 1 440 -65 407 170 0 75 chr21 36032622 36032716 -8874854 - MLT1D LTR MaLR 0 505 419 3998 156 86 37 chr21 36033964 36034364 -8873206 + L1MB7 LINE L1 5310 5689 -495 3302 77 16 0 chr21 36034364 36034808 -8872762 - L1PA13 LINE L1 -3 6160 5710 3998 156 86 37 chr21 36034808 36035226 -8872344 + L1MB7 LINE L1 5689 6168 -16 1339 232 21 75 chr21 36035552 36035979 -8871591 + MLT1C LTR MaLR 64 467 0 297 256 117 67 chr21 36036257 36036437 -8871133 - MIR SINE MIR -18 244 56 1544 178 88 9 chr21 36037400 36037720 -8869850 + MER7A DNA MER2_type 1 343 -3 5819 24 0 5 chr21 36038814 36039479 -8868091 + L1PA4 LINE L1 5491 6152 -3 463 281 167 37 chr21 36039617 36039994 -8867576 + MLT1J1 LTR MaLR 19 444 -2 651 309 94 46 chr21 36039998 36040687 -8866883 - L1MC4a LINE L1 -95 6026 5301 347 221 0 95 chr21 36040689 36040784 -8866786 + MER21B LTR ERV1 1 86 -777 2489 239 124 25 chr21 36040811 36041536 -8866034 + MER21B LTR ERV1 19 815 -48 23 33 0 0 chr21 36042060 36042090 -8865480 + AT_rich Low_complexity Low_complexity 1 30 0 9854 127 8 23 chr21 36042394 36044560 -8863010 + L1MA2 LINE L1 3674 5798 -506 2396 89 3 0 chr21 36044560 36044863 -8862707 + AluY SINE Alu 1 304 -7 9854 127 8 23 chr21 36044863 36045363 -8862207 + L1MA2 LINE L1 5798 6304 0 575 253 63 11 chr21 36046941 36047115 -8860455 + MIR SINE MIR 36 218 -44 581 299 107 13 chr21 36047145 36047379 -8860191 + MIR SINE MIR 5 260 -2 287 186 101 112 chr21 36047374 36047472 -8860098 - MIR SINE MIR -67 141 58 * 441 54 0 0 chr21 36048132 36048188 -8859382 + (TG)n Simple_repeat Simple_repeat 2 57 0 2856 104 116 14 chr21 36049505 36049742 -8857828 + LTR24C LTR ERV1 83 294 -341 1977 122 38 14 chr21 36049742 36050030 -8857540 - AluSq SINE Alu -18 295 1 2856 104 116 14 chr21 36050030 36050292 -8857278 + LTR24C LTR ERV1 294 633 -2 374 206 82 0 chr21 36050319 36050392 -8857178 - MER21A LTR ERV1 -129 802 724 342 223 48 58 chr21 36050504 36050607 -8856963 - MER21B LTR ERV1 -258 605 504 586 185 86 31 chr21 36051138 36051300 -8856270 - L1MB5 LINE L1 0 6174 6004 1388 130 32 0 chr21 36051328 36051544 -8856026 - L1PA10 LINE L1 -1 6167 5945 299 139 0 0 chr21 36052221 36052264 -8855306 + 5S rRNA rRNA 1 43 -78 1314 173 25 8 chr21 36052824 36053061 -8854509 + L1M3e LINE L1 1 241 -6789 2309 143 86 23 chr21 36053205 36053346 -8854224 + L1MA7 LINE L1 5812 5943 -348 2256 135 13 24 chr21 36053346 36053725 -8853845 + THE1C LTR MaLR 1 375 0 2309 143 86 23 chr21 36053725 36054024 -8853546 + L1MA7 LINE L1 5943 6280 -11 321 219 78 2 chr21 36054317 36054415 -8853155 - MLT1D LTR MaLR -18 487 345 1875 96 74 66 chr21 36054446 36054809 -8852761 + THE1C LTR MaLR 1 366 -9 701 249 65 56 chr21 36054842 36055180 -8852390 - MLT1D LTR MaLR -164 341 1 251 247 12 49 chr21 36055182 36055263 -8852307 + MER103 DNA DNA 44 121 -45 2248 139 11 19 chr21 36055591 36055958 -8851612 - THE1B LTR MaLR 0 364 1 237 245 0 0 chr21 36057766 36057819 -8849751 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 240 311 29 10 chr21 36057876 36057979 -8849591 - MIR SINE MIR -135 127 23 539 223 82 17 chr21 36060346 36060495 -8847075 + MER20 DNA MER1_type 1 151 -68 426 295 101 25 chr21 36062595 36062832 -8844738 + LTR33A LTR ERVL 2 256 -267 2300 92 0 0 chr21 36062951 36063257 -8844313 - AluSq SINE Alu 0 306 1 871 221 67 88 chr21 36063314 36063690 -8843880 + MLT1I LTR MaLR 42 409 0 315 0 0 0 chr21 36065747 36065782 -8841788 + (CCCTAA)n Simple_repeat Simple_repeat 6 40 0 7312 53 1 2 chr21 36065918 36066844 -8840726 + L1PA7 LINE L1 5229 6153 -1 2562 139 65 2 chr21 36068703 36069106 -8838464 + MSTA LTR MaLR 1 428 0 1881 150 36 20 chr21 36069735 36070041 -8837529 - AluSx SINE Alu -1 311 1 1009 244 129 50 chr21 36071416 36071997 -8835573 - L1ME4a LINE L1 0 6121 5495 310 273 9 27 chr21 36073592 36073702 -8833868 - MIR3 SINE MIR -6 202 95 2180 110 3 3 chr21 36074007 36074299 -8833271 - AluSc SINE Alu -17 292 1 269 240 10 73 chr21 36075444 36075540 -8832030 + MIR SINE MIR 117 206 -56 468 0 0 0 chr21 36076296 36076348 -8831222 + (TG)n Simple_repeat Simple_repeat 1 52 0 32 43 0 0 chr21 36077068 36077114 -8830456 + AT_rich Low_complexity Low_complexity 1 46 0 548 320 44 20 chr21 36077114 36077364 -8830206 - MIR SINE MIR 0 262 7 350 186 18 18 chr21 36077650 36077763 -8829807 + GA-rich Low_complexity Low_complexity 2 114 0 188 333 124 20 chr21 36079884 36080037 -8827533 + L3 LINE CR1 1386 1554 -23 2157 128 14 35 chr21 36080240 36080584 -8826986 + MER1B DNA MER1_type 1 337 0 6177 220 68 43 chr21 36081653 36084307 -8823263 + L1MDa LINE L1 19 2851 -3689 2212 162 38 7 chr21 36084307 36084734 -8822836 + L1MA4 LINE L1 5858 6297 -3 6177 220 68 43 chr21 36084734 36085106 -8822464 + L1MDa LINE L1 2851 3212 -3328 441 300 86 9 chr21 36086480 36086700 -8820870 + L1MC4 LINE L1 7806 8042 0 786 311 55 40 chr21 36087835 36088052 -8819518 + HAL1b LINE L1 16 228 -1120 2621 55 0 6 chr21 36088052 36088364 -8819206 + AluY SINE Alu 1 310 -1 786 311 55 40 chr21 36088364 36088729 -8818841 + HAL1b LINE L1 228 607 -741 272 236 11 22 chr21 36089137 36089226 -8818344 + L1MC4a LINE L1 5844 5931 -1877 25 0 0 0 chr21 36089231 36089256 -8818314 + AT_rich Low_complexity Low_complexity 1 25 0 396 0 0 0 chr21 36089430 36089474 -8818096 + (TA)n Simple_repeat Simple_repeat 1 44 0 495 285 156 26 chr21 36090249 36090795 -8816775 + L2 LINE L2 2518 3119 -194 686 280 18 18 chr21 36090839 36091064 -8816506 + MIR SINE MIR 32 256 -6 2456 152 5 0 chr21 36091116 36091504 -8816066 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr21 36093552 36093574 -8813996 + AT_rich Low_complexity Low_complexity 1 22 0 228 35 0 0 chr21 36093789 36093818 -8813752 + (T)n Simple_repeat Simple_repeat 1 29 0 1842 179 3 0 chr21 36094056 36094353 -8813217 - AluSx SINE Alu -14 298 1 842 158 0 0 chr21 36094814 36094947 -8812623 - FLAM_C SINE Alu 0 133 1 1048 215 33 21 chr21 36095692 36095934 -8811636 + L1 LINE L1 2539 2783 -3363 1006 241 35 72 chr21 36095948 36096296 -8811274 + MLT2C1 LTR ERVL 63 397 0 1327 193 80 55 chr21 36096798 36097197 -8810373 + LTR37A LTR ERV1 18 426 0 207 216 0 0 chr21 36099239 36099276 -8808294 - MIR SINE MIR -8 254 218 2065 117 61 22 chr21 36102660 36103019 -8804551 + THE1C LTR MaLR 1 373 -2 414 268 105 38 chr21 36103215 36103424 -8804146 - MIR SINE MIR -24 238 16 982 211 207 132 chr21 36103617 36104948 -8802622 + L2 LINE L2 1311 2741 -573 24 53 0 0 chr21 36105167 36105205 -8802365 + AT_rich Low_complexity Low_complexity 1 38 0 997 200 6 0 chr21 36105957 36106122 -8801448 - MER45A DNA AcHobo 0 178 13 565 278 6 17 chr21 36106172 36106345 -8801225 - MIR SINE MIR -70 192 22 30 77 0 0 chr21 36106532 36106597 -8800973 + AT_rich Low_complexity Low_complexity 1 65 0 282 305 49 0 chr21 36108860 36108942 -8798628 + L2 LINE L2 3116 3201 -71 387 0 0 0 chr21 36109658 36109701 -8797869 + (TG)n Simple_repeat Simple_repeat 1 43 0 210 37 0 0 chr21 36109703 36109730 -8797840 + (GA)n Simple_repeat Simple_repeat 2 28 0 1661 107 63 74 chr21 36109921 36110220 -8797350 + AluSx SINE Alu 1 296 -16 900 207 11 21 chr21 36111210 36111398 -8796172 - MLT1A2 LTR MaLR 0 374 189 222 37 0 0 chr21 36111414 36111441 -8796129 + (GA)n Simple_repeat Simple_repeat 1 27 0 521 271 60 0 chr21 36111460 36111616 -8795954 - FRAM SINE Alu 0 171 8 792 194 0 42 chr21 36111629 36111794 -8795776 - MLT1A2 LTR MaLR -216 158 1 347 331 61 22 chr21 36111902 36112083 -8795487 + L3 LINE CR1 1382 1569 -8 465 323 6 0 chr21 36112831 36112989 -8794581 + (TG)n Simple_repeat Simple_repeat 2 160 0 319 235 41 51 chr21 36113027 36113125 -8794445 + MIR SINE MIR 31 127 -81 603 231 151 5 chr21 36113156 36113342 -8794228 - MER58C DNA MER1_type -1 214 2 223 333 11 22 chr21 36113585 36113675 -8793895 + MIR SINE MIR 27 115 -147 2010 222 114 5 chr21 36115279 36115842 -8791728 + MLT1E3 LTR MaLR 1 624 0 226 275 66 0 chr21 36116741 36116832 -8790738 + L2 LINE L2 3168 3264 -8 830 293 66 36 chr21 36117339 36117731 -8789839 - L2 LINE L2 0 3313 2910 1762 220 51 14 chr21 36119480 36119912 -8787658 - MLT1C LTR MaLR -14 453 6 2812 100 5 0 chr21 36120002 36120373 -8787197 - THE1C LTR MaLR -2 373 1 300 246 0 0 chr21 36121183 36121321 -8786249 + (CA)n Simple_repeat Simple_repeat 1 138 0 371 291 95 25 chr21 36122013 36122171 -8785399 - MER5B DNA MER1_type 0 178 10 2399 77 0 7 chr21 36122798 36123097 -8784473 - AluY SINE Alu -14 297 1 2121 132 0 0 chr21 36123153 36123449 -8784121 - AluSg SINE Alu -14 296 1 467 200 178 15 chr21 36124165 36124300 -8783270 + MER5A DNA MER1_type 32 188 -1 2306 94 7 7 chr21 36124326 36124624 -8782946 + AluSg1 SINE Alu 1 298 -11 723 239 0 0 chr21 36124885 36125015 -8782555 - FLAM_A SINE Alu -3 130 1 2507 154 21 5 chr21 36125870 36126291 -8781279 - MSTA LTR MaLR 0 428 1 1832 138 11 3 chr21 36128274 36128556 -8779014 + AluSg SINE Alu 27 310 0 271 227 13 13 chr21 36129345 36129420 -8778150 + CT-rich Low_complexity Low_complexity 1 75 0 569 278 9 35 chr21 36130023 36130250 -8777320 + L1ME LINE L1 5542 5762 -359 534 309 61 52 chr21 36130330 36130792 -8776778 - L2 LINE L2 -22 3291 2826 198 333 0 0 chr21 36131896 36131956 -8775614 - MIR SINE MIR -112 150 91 2536 125 28 0 chr21 36133083 36133435 -8774135 + THE1B LTR MaLR 1 362 -2 243 61 0 0 chr21 36133667 36133700 -8773870 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 308 0 27 0 chr21 36135405 36135442 -8772128 - MADE1 DNA Mariner -41 39 2 778 209 68 0 chr21 36136395 36136572 -8770998 - MER5A DNA MER1_type 0 189 1 744 321 45 43 chr21 36137468 36137842 -8769728 - L3 LINE CR1 -108 1469 1095 949 272 193 3 chr21 36138836 36139189 -8768381 + MLT1J1 LTR MaLR 6 425 -21 367 221 84 137 chr21 36139270 36139313 -8768257 - MIR SINE MIR -13 249 205 1975 137 7 13 chr21 36139313 36139613 -8767957 - AluSx SINE Alu -14 298 1 367 221 84 137 chr21 36139613 36139759 -8767811 - MIR SINE MIR -57 205 70 719 289 68 0 chr21 36139888 36140168 -8767402 + MLT1I LTR MaLR 94 392 -17 2325 99 0 0 chr21 36143481 36143785 -8763785 + AluSg SINE Alu 1 304 -6 390 21 0 0 chr21 36143952 36143999 -8763571 + (TG)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr21 36148979 36149002 -8758568 + AT_rich Low_complexity Low_complexity 1 23 0 3193 162 67 22 chr21 36149088 36149674 -8757896 + LTR9 LTR ERV1 1 612 0 4474 136 20 3 chr21 36149964 36150663 -8756907 + MER50 LTR ERV1 1 711 -23 645 228 168 68 chr21 36151499 36151749 -8755821 - LTR16A LTR ERVL 0 450 176 264 273 61 10 chr21 36151797 36151896 -8755674 - LTR16A LTR ERVL -346 104 1 239 191 0 0 chr21 36151896 36151938 -8755632 + MIR SINE MIR 139 180 -82 2469 189 43 21 chr21 36151985 36152451 -8755119 - MER70B LTR ERVL -102 476 1 3498 65 0 7 chr21 36152647 36153075 -8754495 - L1PA8 LINE L1 -6 6166 5742 365 276 10 10 chr21 36153090 36153188 -8754382 - MLT1K LTR MaLR -314 274 177 213 39 0 0 chr21 36153801 36153827 -8753743 + (A)n Simple_repeat Simple_repeat 1 26 0 258 236 0 0 chr21 36153834 36153889 -8753681 - MIR3 SINE MIR -2 206 152 248 200 191 67 chr21 36154315 36154378 -8753192 + MIR SINE MIR 85 139 -123 2754 198 50 45 chr21 36154378 36154998 -8752572 - MLT1E3 LTR MaLR -1 623 1 248 200 191 67 chr21 36154998 36155039 -8752531 + MIR SINE MIR 139 202 -60 1062 214 113 22 chr21 36155092 36155321 -8752249 + MLT2F LTR ERVL 204 453 -210 812 314 94 18 chr21 36155397 36155843 -8751727 - ERVL LTR ERVL -436 5328 4849 315 0 0 0 chr21 36156121 36156156 -8751414 + (T)n Simple_repeat Simple_repeat 1 35 0 264 237 0 0 chr21 36156161 36156220 -8751350 + MLT1I LTR MaLR 537 595 0 292 279 12 0 chr21 36156227 36156313 -8751257 + MLT1D-int LTR MaLR 8 94 -1277 * 306 333 61 19 chr21 36156312 36156525 -8751045 + MLT1D-int LTR MaLR 286 507 -1228 276 250 23 139 chr21 36157171 36157343 -8750227 + MLT1D-int LTR MaLR 1033 1184 -187 1737 150 7 34 chr21 36157352 36157645 -8749925 + AluJo SINE Alu 18 302 -10 332 153 0 14 chr21 36157645 36157717 -8749853 + GA-rich Low_complexity Low_complexity 1 71 0 228 233 17 0 chr21 36157798 36157858 -8749712 + MLT1D-int LTR MaLR 1654 1714 -21 892 331 7 17 chr21 36158124 36158426 -8749144 - ERVL LTR ERVL -2258 3506 3208 24 0 0 0 chr21 36159201 36159225 -8748345 + AT_rich Low_complexity Low_complexity 1 24 0 1153 205 56 7 chr21 36159402 36159704 -8747866 + L1ME1 LINE L1 4957 5273 -873 529 97 29 19 chr21 36159778 36159881 -8747689 + L1MA7 LINE L1 6187 6290 -1 2572 261 41 18 chr21 36159887 36160708 -8746862 + L1ME1 LINE L1 5317 6156 -10 4353 267 90 17 chr21 36160728 36160899 -8746671 + L1MEc LINE L1 1631 1788 -4427 351 96 0 0 chr21 36160899 36160951 -8746619 + (TG)n Simple_repeat Simple_repeat 2 53 0 4353 267 90 17 chr21 36160951 36162077 -8745493 + L1MEc LINE L1 1788 2831 -3384 957 188 6 29 chr21 36162077 36162247 -8745323 - FRAM SINE Alu 0 166 1 4353 267 90 17 chr21 36162247 36163109 -8744461 + L1MEc LINE L1 2831 3934 -2281 1137 203 47 8 chr21 36163109 36163345 -8744225 + MLT1D LTR MaLR 1 245 -260 1905 152 63 30 chr21 36163370 36163733 -8743837 + THE1C LTR MaLR 1 375 0 2684 119 12 17 chr21 36163733 36163896 -8743674 + THE1C-int LTR MaLR 1 163 -1417 1093 83 122 6 chr21 36163896 36164052 -8743518 - L1PA11 LINE L1 -3 6171 5998 2684 119 12 17 chr21 36164052 36164348 -8743222 + THE1C-int LTR MaLR 163 405 -1175 2385 221 30 13 chr21 36164335 36164869 -8742701 + L1ME1 LINE L1 5615 6157 -9 * 273 128 0 0 chr21 36164893 36164940 -8742630 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 987 218 106 50 chr21 36164964 36165304 -8742266 + MLT2C1 LTR ERVL 13 371 -26 301 207 161 23 chr21 36165418 36165505 -8742065 + L2 LINE L2 3214 3312 -1 707 234 38 85 chr21 36165588 36165776 -8741794 - MER58A DNA MER1_type -2196 224 48 1688 165 9 37 chr21 36165776 36166097 -8741473 + AluJb SINE Alu 1 312 0 707 234 38 85 chr21 36166097 36166143 -8741427 - MER58A DNA MER1_type -2372 48 1 21 36 0 0 chr21 36167056 36167084 -8740486 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 36168003 36168026 -8739544 + AT_rich Low_complexity Low_complexity 1 23 0 2255 110 3 0 chr21 36168094 36168402 -8739168 + AluSc SINE Alu 1 309 0 2555 115 5 23 chr21 36168485 36168877 -8738693 + L1PB2 LINE L1 5767 6151 0 491 269 20 41 chr21 36168925 36169122 -8738448 + MIR SINE MIR 54 246 -16 2911 209 51 52 chr21 36169301 36170271 -8737299 - L1ME1 LINE L1 -7 6159 5197 3860 168 76 8 chr21 36170282 36171020 -8736550 - L1MC2 LINE L1 -15 6329 5542 * 6286 218 55 23 chr21 36171006 36171826 -8735744 - L1ME1 LINE L1 -920 5226 4434 1915 154 116 43 chr21 36171826 36172223 -8735347 - MSTC LTR MaLR -2 426 1 1875 107 72 38 chr21 36172228 36172519 -8735051 + AluSx SINE Alu 1 301 -11 6286 218 55 23 chr21 36172519 36173284 -8734286 - L1ME1 LINE L1 -1715 4431 3572 2579 40 10 0 chr21 36173284 36173583 -8733987 - AluY SINE Alu -9 302 1 6286 218 55 23 chr21 36173583 36173708 -8733862 - L1ME1 LINE L1 -2574 3572 3453 593 252 0 0 chr21 36174355 36174470 -8733100 - MER5A DNA MER1_type -3 186 72 574 320 71 54 chr21 36175452 36175802 -8731768 - L2 LINE L2 -3 3269 2914 498 326 6 0 chr21 36175804 36175979 -8731591 + (TG)n Simple_repeat Simple_repeat 1 176 0 769 138 16 0 chr21 36175983 36176106 -8731464 + MSTB LTR MaLR 1 125 -301 2209 120 3 39 chr21 36176108 36176441 -8731129 + MER1B DNA MER1_type 19 339 0 1799 137 68 0 chr21 36176441 36176731 -8730839 + MSTB LTR MaLR 117 426 0 474 244 0 0 chr21 36176734 36176890 -8730680 + (TG)n Simple_repeat Simple_repeat 1 156 0 560 271 164 5 chr21 36177170 36177543 -8730027 - LTR16A1 LTR ERVL -20 437 6 234 0 0 0 chr21 36177682 36177708 -8729862 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1363 160 218 35 chr21 36178033 36178427 -8729143 - MER31B LTR ERV1 0 466 1 1442 186 0 0 chr21 36179239 36179487 -8728083 + L1MC1 LINE L1 5862 6109 -224 330 26 0 0 chr21 36179798 36179837 -8727733 + (TG)n Simple_repeat Simple_repeat 1 39 0 998 175 6 12 chr21 36179852 36180023 -8727547 + L1MC1 LINE L1 6164 6333 0 3113 219 9 37 chr21 36180169 36180462 -8727108 + MER82 DNA MER2_type 1 301 -352 2158 32 4 8 chr21 36180462 36180713 -8726857 - L1PA4 LINE L1 0 6155 5906 3113 219 9 37 chr21 36180713 36181091 -8726479 + MER82 DNA MER2_type 301 653 0 607 207 36 21 chr21 36181716 36181856 -8725714 - MER53 DNA DNA -46 143 2 382 221 150 0 chr21 36181921 36182034 -8725536 + MIR3 SINE MIR 67 196 -12 1094 275 36 0 chr21 36183171 36183451 -8724119 - L1M4 LINE L1 -1150 4996 4707 423 332 40 5 chr21 36183692 36183891 -8723679 - MIR SINE MIR -34 228 23 366 203 14 0 chr21 36183901 36183975 -8723595 + MER5A DNA MER1_type 1 75 -114 193 206 127 16 chr21 36183936 36183999 -8723571 - MER5A DNA MER1_type -24 165 96 * 187 244 0 0 chr21 36183977 36184018 -8723552 + MER5A DNA MER1_type 147 187 -2 * 338 322 14 7 chr21 36184264 36184407 -8723163 + MIR SINE MIR 89 232 -30 6493 172 13 31 chr21 36184460 36185217 -8722353 + MER21-int LTR ERV1 2488 3218 -973 3186 143 62 4 chr21 36185217 36185715 -8721855 - MER1A DNA MER1_type 0 527 1 6493 172 13 31 chr21 36185715 36186158 -8721412 + MER21-int LTR ERV1 3218 3667 -524 1192 74 0 0 chr21 36186158 36186306 -8721264 - L1P4 LINE L1 -468 5706 5559 1995 85 14 17 chr21 36186306 36186597 -8720973 + L1PA11 LINE L1 5881 6174 0 1948 191 2 49 chr21 36186598 36187006 -8720564 + MER21-int LTR ERV1 3662 4050 -141 502 119 114 0 chr21 36187015 36187115 -8720455 + MER21A LTR ERV1 373 576 -355 720 147 100 12 chr21 36187201 36187371 -8720199 - MER53 DNA DNA -4 185 1 808 175 75 96 chr21 36189014 36189262 -8718308 + L1ME2 LINE L1 5621 5864 -300 2165 125 3 0 chr21 36189262 36189566 -8718004 + AluSp SINE Alu 1 305 -8 808 175 75 96 chr21 36189566 36189597 -8717973 + L1ME2 LINE L1 5864 5894 -270 1011 213 73 18 chr21 36189597 36190128 -8717442 - MER92B LTR ERV1 -2 634 1 815 220 7 113 chr21 36190134 36190328 -8717242 + L1ME2 LINE L1 5897 6051 -113 1997 179 28 6 chr21 36190328 36190685 -8716885 - MLT1A1 LTR MaLR 0 365 1 815 220 7 113 chr21 36190685 36190781 -8716789 + L1ME2 LINE L1 6051 6156 -8 190 348 7 52 chr21 36190808 36190943 -8716627 + MIR SINE MIR 4 132 -130 189 107 0 0 chr21 36191291 36191319 -8716251 + (T)n Simple_repeat Simple_repeat 1 28 0 321 291 24 16 chr21 36191470 36191597 -8715973 + MER94 DNA DNA 4 131 -3 1669 149 10 3 chr21 36191675 36191970 -8715600 + L1MA4 LINE L1 5999 6295 -5 1053 269 87 43 chr21 36192313 36192433 -8715137 + L1MC4 LINE L1 7157 7270 -772 2417 67 23 7 chr21 36192433 36192732 -8714838 + AluSg SINE Alu 1 304 -6 1053 269 87 43 chr21 36192732 36193209 -8714361 + L1MC4 LINE L1 7270 7780 -262 205 186 0 0 chr21 36193220 36193263 -8714307 + T-rich Low_complexity Low_complexity 1 43 0 2269 59 10 0 chr21 36193266 36193556 -8714014 - L1PA7 LINE L1 0 6154 5862 1378 78 0 0 chr21 36193559 36193739 -8713831 + L1P LINE L1 4875 5054 -1092 479 198 0 18 chr21 36193750 36193861 -8713709 + L1MC4 LINE L1 7804 7912 -130 397 221 16 31 chr21 36193908 36194035 -8713535 + L1MC4 LINE L1 7918 8042 0 2286 102 10 0 chr21 36194128 36194421 -8713149 + AluSx SINE Alu 1 296 -16 465 283 92 52 chr21 36194817 36195089 -8712481 - MER76 LTR ERV -30 658 376 1123 201 13 4 chr21 36195127 36195356 -8712214 - MER76 LTR ERV -457 231 1 319 320 58 12 chr21 36196080 36196252 -8711318 + MIR SINE MIR 68 247 -15 285 146 0 0 chr21 36196295 36196343 -8711227 + (CA)n Simple_repeat Simple_repeat 1 48 0 570 319 25 5 chr21 36199434 36199638 -8707932 - MIR SINE MIR -41 221 14 442 0 35 0 chr21 36200140 36200198 -8707372 + (TG)n Simple_repeat Simple_repeat 1 60 0 396 298 35 41 chr21 36201649 36201820 -8705750 - LTR16B LTR ERVL -2 462 293 331 315 14 20 chr21 36201911 36202057 -8705513 - LTR16B LTR ERVL -319 145 1 446 279 23 41 chr21 36202648 36202820 -8704750 + MIR SINE MIR 67 235 -27 307 228 25 13 chr21 36202827 36202906 -8704664 - MER116 DNA Mariner 0 80 1 318 127 0 84 chr21 36203262 36203333 -8704237 - MLT2B1 LTR ERVL 0 520 456 207 220 0 0 chr21 36203333 36203383 -8704187 + (CA)n Simple_repeat Simple_repeat 1 50 0 2129 193 25 74 chr21 36203398 36203886 -8703684 - MLT2B1 LTR ERVL -56 464 1 705 198 61 114 chr21 36204390 36204660 -8702910 - MLT2B1 LTR ERVL -83 471 165 2585 121 3 0 chr21 36204709 36205072 -8702498 + THE1B LTR MaLR 1 364 0 264 284 51 62 chr21 36205709 36205786 -8701784 - MIR3 SINE MIR -19 189 113 736 197 8 0 chr21 36205786 36205918 -8701652 + FLAM_C SINE Alu 1 133 0 264 284 51 62 chr21 36205918 36206016 -8701554 - MIR3 SINE MIR -95 113 16 2664 52 0 3 chr21 36206155 36206465 -8701105 - AluY SINE Alu -2 309 1 211 189 0 0 chr21 36207077 36207114 -8700456 + (CAAAG)n Simple_repeat Simple_repeat 3 39 0 222 265 199 49 chr21 36207152 36207439 -8700131 - L2 LINE L2 -2 3311 2982 2938 215 35 52 chr21 36207820 36208304 -8699266 + L1ME2 LINE L1 5151 5642 -522 1847 169 0 25 chr21 36208304 36208624 -8698946 - AluJb SINE Alu 0 312 1 2938 215 35 52 chr21 36208624 36209173 -8698397 + L1ME2 LINE L1 5642 6162 -2 700 266 38 60 chr21 36209184 36209552 -8698018 - L2 LINE L2 -1488 1826 1467 1412 310 91 27 chr21 36209566 36210354 -8697216 - L2 LINE L2 -2093 1221 383 316 308 101 6 chr21 36210598 36210767 -8696803 + MIR SINE MIR 22 206 -56 2750 23 0 7 chr21 36211302 36211606 -8695964 - AluY SINE Alu -9 302 1 193 180 16 33 chr21 36212932 36212993 -8694577 + CT-rich Low_complexity Low_complexity 3 62 0 901 105 0 53 chr21 36212993 36213183 -8694387 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 848 214 79 92 chr21 36213908 36214099 -8693471 + MER110A LTR ERV1 35 227 -248 737 148 25 0 chr21 36214099 36214221 -8693349 - FLAM_A SINE Alu -7 126 2 848 214 79 92 chr21 36214221 36214495 -8693075 + MER110A LTR ERV1 227 472 -3 1296 233 50 43 chr21 36214542 36214958 -8692612 - LTR52 LTR ERVL -2 419 1 547 157 172 90 chr21 36215105 36215377 -8692193 - MER4C LTR ERV1 -20 445 149 * 1610 164 25 48 chr21 36215361 36215715 -8691855 - MER4A LTR ERV1 -318 346 1 1803 221 85 83 chr21 36215808 36216445 -8691125 + MLT1E1 LTR MaLR 17 654 0 603 153 0 0 chr21 36217356 36217487 -8690083 + (TATG)n Simple_repeat Simple_repeat 2 132 0 1482 139 11 68 chr21 36217651 36217874 -8689696 - MLT1B LTR MaLR -2 388 183 2195 100 10 3 chr21 36217874 36218164 -8689406 - AluSg SINE Alu -18 292 1 1482 139 11 68 chr21 36218164 36218221 -8689349 - MLT1B LTR MaLR -207 183 124 2101 121 53 5 chr21 36218221 36218597 -8688973 + LTR7 LTR ERV1 1 450 0 649 155 93 8 chr21 36218597 36218711 -8688859 - MLT1B LTR MaLR -261 129 5 1194 231 15 47 chr21 36219232 36219570 -8688000 + MLT1B LTR MaLR 64 390 0 362 194 28 0 chr21 36219662 36219734 -8687836 + MER110 LTR ERV1 404 477 -14 256 113 57 0 chr21 36220374 36220427 -8687143 + GA-rich Low_complexity Low_complexity 4 59 0 482 224 187 28 chr21 36220452 36220666 -8686904 - MLT1L LTR MaLR 0 615 368 1029 205 5 36 chr21 36220772 36220996 -8686574 - LTR68 LTR ERV1 -127 613 397 3906 62 0 10 chr21 36221001 36221503 -8686067 + L1PA7 LINE L1 5655 6151 -3 282 115 0 0 chr21 36221504 36221556 -8686014 + L1MC3 LINE L1 7580 7631 -154 236 159 0 16 chr21 36221654 36221717 -8685853 + (CA)n Simple_repeat Simple_repeat 2 63 0 192 200 0 0 chr21 36223347 36223387 -8684183 + (TA)n Simple_repeat Simple_repeat 1 40 0 656 203 39 0 chr21 36223846 36223974 -8683596 + MER58B DNA MER1_type 209 341 0 1830 198 37 27 chr21 36225170 36225579 -8681991 - MLT1C LTR MaLR -2 465 53 275 302 52 17 chr21 36226411 36226527 -8681043 + MIR SINE MIR 124 243 -19 23 33 0 0 chr21 36226762 36226792 -8680778 + AT_rich Low_complexity Low_complexity 1 30 0 915 185 54 0 chr21 36226885 36227069 -8680501 + MLT1C LTR MaLR 199 392 -75 1205 163 39 39 chr21 36227229 36227487 -8680083 - THE1C LTR MaLR 0 375 118 839 222 75 86 chr21 36227494 36227855 -8679715 - MLT1E2 LTR MaLR -265 361 5 705 344 105 23 chr21 36228694 36229644 -8677926 - L1M4 LINE L1 -841 5305 4278 775 246 28 17 chr21 36229870 36230049 -8677521 + MLT1D LTR MaLR 1 181 -324 3912 214 51 24 chr21 36230917 36232254 -8675316 - L1MD1 LINE L1 -15 6227 4856 210 337 34 0 chr21 36233705 36233794 -8673776 + MIR SINE MIR 84 175 -87 1499 182 0 0 chr21 36235211 36235469 -8672101 + L1M4 LINE L1 5413 5670 -514 933 229 213 51 chr21 36235553 36236194 -8671376 - L2 LINE L2 0 3313 2557 916 255 147 34 chr21 36236968 36237384 -8670186 - L2 LINE L2 -35 3278 2816 2026 136 3 3 chr21 36237503 36237797 -8669773 + AluSx SINE Alu 1 294 -18 4300 184 24 42 chr21 36237800 36238787 -8668783 + L1MB8 LINE L1 5209 6178 0 475 271 151 0 chr21 36238787 36238979 -8668591 - L2 LINE L2 -618 2696 2476 507 294 136 43 chr21 36239980 36240215 -8667355 + MIR SINE MIR 2 258 -4 1809 30 0 0 chr21 36240563 36240764 -8666806 + L1PA4 LINE L1 5952 6152 -3 245 299 29 7 chr21 36240915 36241052 -8666518 + (TTATA)n Simple_repeat Simple_repeat 3 142 0 509 239 28 45 chr21 36241285 36241461 -8666109 - L1MD3 LINE L1 -4 7991 7819 2191 76 0 0 chr21 36241534 36241798 -8665772 - AluSx SINE Alu -15 297 34 1802 67 0 0 chr21 36241808 36242032 -8665538 - AluY SINE Alu -11 300 77 536 253 65 24 chr21 36242348 36242518 -8665052 - LTR33 LTR ERVL -8 513 337 323 326 135 22 chr21 36243658 36243888 -8663682 - MIR SINE MIR -4 258 3 189 332 53 53 chr21 36243980 36244170 -8663400 + L3 LINE CR1 786 975 -602 1108 196 70 67 chr21 36244768 36245140 -8662430 - LTR52 LTR ERVL -3 418 46 1041 172 0 24 chr21 36245908 36246077 -8661493 - FRAM SINE Alu 0 166 2 312 243 22 103 chr21 36246103 36246239 -8661331 - MER5B DNA MER1_type -49 129 5 2353 132 22 19 chr21 36246548 36246911 -8660659 + THE1B LTR MaLR 1 364 0 12979 81 10 0 chr21 36246911 36248476 -8659094 + THE1B-int LTR MaLR 1 1580 0 2239 118 88 18 chr21 36248476 36248816 -8658754 + THE1B LTR MaLR 1 364 0 260 346 189 9 chr21 36249553 36249781 -8657789 - L2 LINE L2 -19 3253 2985 272 254 42 68 chr21 36250308 36250405 -8657165 + MIR SINE MIR 40 135 -127 1921 175 10 34 chr21 36250405 36250788 -8656782 - MLT1A2 LTR MaLR 0 374 1 272 254 42 68 chr21 36250788 36250808 -8656762 + MIR SINE MIR 135 154 -108 415 276 0 19 chr21 36251507 36251612 -8655958 + MER5A DNA MER1_type 4 106 -83 4807 171 57 3 chr21 36251673 36252005 -8655565 + L1MB2 LINE L1 5099 5412 -759 306 0 0 0 chr21 36252005 36252039 -8655531 + (CA)n Simple_repeat Simple_repeat 2 35 0 4807 171 57 3 chr21 36252039 36252708 -8654862 + L1MB2 LINE L1 5412 6171 0 2359 113 0 0 chr21 36252717 36253028 -8654542 + AluY SINE Alu 1 311 0 1269 190 160 83 chr21 36254094 36254563 -8653007 + MLT1D LTR MaLR 1 505 0 2772 19 7 0 chr21 36255680 36255989 -8651581 + AluY SINE Alu 1 311 0 2070 138 10 0 chr21 36258408 36258712 -8648858 + AluSq SINE Alu 1 307 -6 312 83 0 0 chr21 36258712 36258760 -8648810 + (GGA)n Simple_repeat Simple_repeat 1 48 0 182 206 0 0 chr21 36259159 36259193 -8648377 - L2 LINE L2 -16 3297 3264 234 293 136 19 chr21 36259201 36259339 -8648231 - MIR SINE MIR -56 152 3 188 0 0 69 chr21 36259793 36259822 -8647748 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 597 322 126 13 chr21 36259945 36260343 -8647227 + MLT1K LTR MaLR 79 521 -67 2639 34 0 0 chr21 36260615 36260910 -8646660 - AluY SINE Alu -16 295 1 4690 177 20 12 chr21 36262845 36263749 -8643821 - L1MB4 LINE L1 0 6180 5270 800 222 0 75 chr21 36264083 36264153 -8643417 - MER3 DNA MER1_type -7 202 128 1752 147 25 66 chr21 36264153 36264472 -8643098 + AluSx SINE Alu 1 306 -6 2190 96 3 0 chr21 36264472 36264778 -8642792 + AluY SINE Alu 1 307 0 800 222 0 75 chr21 36264778 36264917 -8642653 - MER3 DNA MER1_type -79 130 7 526 0 0 0 chr21 36264981 36265039 -8642531 - L1PA5 LINE L1 -181 5973 5916 1529 35 0 0 chr21 36265039 36265256 -8642314 + L1PA5 LINE L1 5981 6154 0 665 184 141 0 chr21 36265261 36265424 -8642146 + L1MEc LINE L1 2171 2356 -4040 * 1057 250 115 6 chr21 36265418 36265774 -8641796 - L1MB4 LINE L1 -1574 4572 4178 23 0 0 0 chr21 36265774 36265797 -8641773 + AT_rich Low_complexity Low_complexity 1 23 0 1052 302 139 2 chr21 36266048 36266452 -8641118 + LTR16B LTR ERVL 2 460 -4 226 329 129 0 chr21 36267234 36267319 -8640251 + LTR16C LTR ERVL 65 160 -331 524 281 98 0 chr21 36267384 36267537 -8640033 + LTR16C LTR ERVL 324 491 0 426 307 33 0 chr21 36267559 36267712 -8639858 + MER103 DNA DNA 4 161 -5 327 25 0 0 chr21 36267742 36267782 -8639788 + (TG)n Simple_repeat Simple_repeat 1 40 0 225 163 0 0 chr21 36268663 36268712 -8638858 + GA-rich Low_complexity Low_complexity 2 50 0 832 207 163 88 chr21 36268770 36268829 -8638741 - Charlie7 DNA MER1_type -602 2010 1957 2132 133 10 0 chr21 36268829 36269138 -8638432 + AluSx SINE Alu 1 312 0 832 207 163 88 chr21 36269138 36269279 -8638291 - Charlie7 DNA MER1_type -655 1957 1828 1408 246 22 33 chr21 36269279 36269645 -8637925 + MLT1A1 LTR MaLR 4 365 0 832 207 163 88 chr21 36269645 36269945 -8637625 - Charlie7 DNA MER1_type -784 1828 1471 1764 236 87 21 chr21 36269945 36270419 -8637151 + MLT1E LTR MaLR 1 505 -88 202 209 339 9 chr21 36270435 36270550 -8637020 + L2 LINE L2 3106 3258 -55 2084 234 114 24 chr21 36270602 36271345 -8636225 - Charlie7 DNA MER1_type -1202 1410 601 537 265 134 80 chr21 36271358 36271943 -8635627 + L2 LINE L2 2633 3296 -17 342 307 0 9 chr21 36271943 36272057 -8635513 - Charlie7 DNA MER1_type -1985 627 515 384 275 0 0 chr21 36272390 36272481 -8635089 - MLT1I LTR MaLR 0 409 319 300 219 0 16 chr21 36272581 36272645 -8634925 - MLT1J LTR MaLR -343 168 106 333 200 230 30 chr21 36272684 36272819 -8634751 - Charlie7 DNA MER1_type -2448 164 3 2366 149 22 0 chr21 36273963 36274319 -8633251 - THE1B LTR MaLR 0 364 1 320 288 13 24 chr21 36274748 36274904 -8632666 + MIR SINE MIR 42 194 -68 2251 137 34 17 chr21 36275975 36276333 -8631237 + THE1B LTR MaLR 1 364 0 1549 199 20 7 chr21 36277036 36277342 -8630228 - L1MA3 LINE L1 0 6305 5996 420 313 104 33 chr21 36278786 36279085 -8628485 + MLT1H1 LTR MaLR 224 587 -3 295 250 20 20 chr21 36279209 36279280 -8628290 + (TA)n Simple_repeat Simple_repeat 2 76 -25 1876 106 3 70 chr21 36279280 36279606 -8627964 + AluSg SINE Alu 1 306 0 295 250 20 20 chr21 36279606 36279633 -8627937 + (TA)n Simple_repeat Simple_repeat 75 101 0 396 340 99 33 chr21 36279711 36280317 -8627253 + L1MC4 LINE L1 5266 5911 -1897 530 196 31 0 chr21 36281444 36281541 -8626029 + MLT2C1 LTR ERVL 3 102 -295 282 81 12 58 chr21 36281541 36281627 -8625943 + (TA)n Simple_repeat Simple_repeat 1 82 0 226 183 39 87 chr21 36281641 36281745 -8625825 + L1MC4 LINE L1 6605 6703 -1339 235 155 0 35 chr21 36281756 36281814 -8625756 + (TA)n Simple_repeat Simple_repeat 2 57 0 1189 197 28 35 chr21 36281827 36282111 -8625459 + MLT2C1 LTR ERVL 116 397 0 2199 108 0 0 chr21 36282489 36282775 -8624795 + AluSc SINE Alu 17 302 -7 261 282 12 0 chr21 36283045 36283130 -8624440 + (CA)n Simple_repeat Simple_repeat 1 86 0 297 0 0 0 chr21 36283149 36283182 -8624388 + (CA)n Simple_repeat Simple_repeat 1 33 0 1100 253 58 17 chr21 36285426 36285786 -8621784 - MLT1I LTR MaLR -32 377 3 356 239 98 0 chr21 36286868 36286960 -8620610 + MER5B DNA MER1_type 7 107 -71 2224 148 22 12 chr21 36286960 36287335 -8620235 + MLT2D LTR ERVL 1 474 -46 443 219 52 4 chr21 36287351 36287791 -8619779 + (TCTCTG)n Simple_repeat Simple_repeat 1 460 0 297 262 43 0 chr21 36287822 36287986 -8619584 + (TCTCTG)n Simple_repeat Simple_repeat 2 172 0 289 119 30 45 chr21 36287994 36288061 -8619509 + MLT2D LTR ERVL 450 515 0 255 246 15 0 chr21 36288076 36288141 -8619429 + MER5B DNA MER1_type 112 177 -1 1521 132 12 44 chr21 36288653 36288903 -8618667 + AluJo SINE Alu 48 289 -23 354 318 28 11 chr21 36289346 36289522 -8618048 + (TGG)n Simple_repeat Simple_repeat 2 180 0 651 150 12 31 chr21 36289527 36289687 -8617883 + (ATGGTG)n Simple_repeat Simple_repeat 3 159 0 207 216 20 0 chr21 36290672 36290723 -8616847 - L2 LINE L2 0 3313 3262 2072 92 11 0 chr21 36290865 36291138 -8616432 + AluSq SINE Alu 37 312 -1 184 29 29 29 chr21 36292255 36292289 -8615281 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 731 180 56 25 chr21 36292295 36292456 -8615114 - AluJo SINE Alu -61 251 86 1292 185 0 0 chr21 36292456 36292661 -8614909 - AluJo SINE Alu -92 220 16 22 0 0 0 chr21 36293248 36293270 -8614300 + AT_rich Low_complexity Low_complexity 1 22 0 2176 107 68 41 chr21 36293302 36293667 -8613903 - THE1C LTR MaLR 0 375 1 2079 206 74 2 chr21 36293695 36294126 -8613444 - MLT1C LTR MaLR -1 466 5 1061 175 13 81 chr21 36295889 36296123 -8611447 + MER20 DNA MER1_type 1 218 -1 1313 250 75 42 chr21 36296471 36296536 -8611034 - MLT1C LTR MaLR 0 467 406 2316 85 0 10 chr21 36296536 36296852 -8610718 + AluSc SINE Alu 1 309 0 1313 250 75 42 chr21 36296852 36297238 -8610332 - MLT1C LTR MaLR -61 406 1 401 220 220 6 chr21 36297773 36297932 -8609638 - MLT1C LTR MaLR -181 286 94 2185 118 7 0 chr21 36298056 36298345 -8609225 - AluSg SINE Alu -19 291 1 449 305 20 40 chr21 36298853 36299053 -8608517 + L2 LINE L2 3055 3250 -63 200 231 169 0 chr21 36299184 36299249 -8608321 + MIR SINE MIR 131 206 -56 189 314 198 16 chr21 36300314 36300566 -8607004 - L2 LINE L2 -1072 2242 1945 899 205 47 28 chr21 36300816 36301031 -8606539 - MER20 DNA MER1_type 0 219 1 1450 256 128 20 chr21 36301966 36302419 -8605151 + MLT1E2 LTR MaLR 125 626 0 539 288 96 16 chr21 36302421 36302671 -8604899 - L2 LINE L2 -801 2513 2244 604 103 0 0 chr21 36302698 36302776 -8604794 + AluJb SINE Alu 47 124 -188 436 31 0 31 chr21 36302793 36302857 -8604713 + (GAA)n Simple_repeat Simple_repeat 3 64 0 326 155 0 27 chr21 36302874 36302948 -8604622 + AluJb SINE Alu 62 124 -178 397 48 0 32 chr21 36302956 36303018 -8604552 + (GAA)n Simple_repeat Simple_repeat 3 62 0 888 189 38 0 chr21 36303018 36303177 -8604393 + FRAM SINE Alu 1 164 -12 264 308 176 31 chr21 36303196 36303644 -8603926 - L2 LINE L2 -1112 2202 1690 3423 183 14 49 chr21 36303647 36304430 -8603140 + L1MA7 LINE L1 4698 5421 -870 1191 84 0 7 chr21 36304430 36304584 -8602986 + L1PA10 LINE L1 6016 6168 0 3423 183 14 49 chr21 36304584 36305148 -8602422 + L1MA7 LINE L1 5421 6003 -288 269 79 34 157 chr21 36305178 36305216 -8602354 + L1MB3 LINE L1 6105 6127 -56 2022 95 54 20 chr21 36305216 36305511 -8602059 + AluSg SINE Alu 1 305 -5 269 79 34 157 chr21 36305511 36305561 -8602009 + L1MB3 LINE L1 6127 6182 -1 202 235 59 15 chr21 36305568 36305636 -8601934 - L2 LINE L2 -1637 1677 1607 659 144 29 11 chr21 36305636 36305810 -8601760 + GA-rich Low_complexity Low_complexity 1 177 0 247 211 158 53 chr21 36306646 36306779 -8600791 + Charlie7 DNA MER1_type 2440 2586 -26 363 23 0 0 chr21 36306792 36306836 -8600734 + (CA)n Simple_repeat Simple_repeat 2 45 0 318 282 73 25 chr21 36307291 36307481 -8600089 - MIR SINE MIR -3 259 15 2376 88 0 0 chr21 36308407 36308702 -8598868 - AluSg SINE Alu -15 295 1 2011 121 3 14 chr21 36311287 36311584 -8595986 + AluSx SINE Alu 1 294 -18 6365 226 56 77 chr21 36313781 36314094 -8593476 - L1MC4 LINE L1 -5 7990 7672 2071 122 3 0 chr21 36314094 36314389 -8593181 - AluSq SINE Alu -17 296 1 6365 226 56 77 chr21 36314389 36317007 -8590563 - L1MC4 LINE L1 -323 7672 5188 2195 145 0 0 chr21 36317007 36317317 -8590253 - AluSx SINE Alu -2 310 1 6365 226 56 77 chr21 36317317 36318716 -8588854 - L1MC4 LINE L1 -2807 5188 3761 1651 208 137 55 chr21 36318945 36319532 -8588038 + MLT1E2 LTR MaLR 1 625 -1 238 359 51 0 chr21 36319538 36319655 -8587915 - L2 LINE L2 -10 3262 3140 840 149 0 15 chr21 36320032 36320166 -8587404 - MSTB1 LTR MaLR -300 132 1 645 179 150 14 chr21 36320166 36320291 -8587279 - MLT2D LTR ERVL -270 144 1 5113 34 0 0 chr21 36320729 36321314 -8586256 + L1PA3 LINE L1 5577 6161 0 25 0 0 0 chr21 36321324 36321349 -8586221 + AT_rich Low_complexity Low_complexity 1 25 0 215 283 168 73 chr21 36323809 36324000 -8583570 - L2 LINE L2 -177 3095 2887 22 35 0 0 chr21 36325390 36325419 -8582151 + AT_rich Low_complexity Low_complexity 1 29 0 1504 198 98 18 chr21 36325930 36326268 -8581302 + MLT1A1 LTR MaLR 1 365 0 241 262 0 83 chr21 36326270 36326354 -8581216 + MIR SINE MIR 33 109 -99 3256 209 67 53 chr21 36327405 36329017 -8578553 - L1MCb LINE L1 -4851 1194 1 222 118 0 0 chr21 36329480 36329514 -8578056 + (T)n Simple_repeat Simple_repeat 1 34 0 268 254 119 0 chr21 36329514 36329581 -8577989 - MIR SINE MIR -67 141 67 180 111 0 0 chr21 36329813 36329840 -8577730 + (A)n Simple_repeat Simple_repeat 1 27 0 278 320 91 43 chr21 36330282 36330513 -8577057 - L3 LINE CR1 -17 1560 1319 21 36 0 0 chr21 36333165 36333193 -8574377 + AT_rich Low_complexity Low_complexity 1 28 0 1977 140 7 0 chr21 36333198 36333490 -8574080 + AluSg SINE Alu 1 294 -16 437 284 66 54 chr21 36333581 36333930 -8573640 + L1M4 LINE L1 4516 4868 -1278 264 311 43 12 chr21 36334033 36334197 -8573373 + L1M4 LINE L1 4879 5047 -1099 21 57 0 0 chr21 36334237 36334272 -8573298 + AT_rich Low_complexity Low_complexity 1 35 0 301 296 94 50 chr21 36334455 36334694 -8572876 + HAL1b LINE L1 354 631 -717 21 0 0 0 chr21 36334694 36334715 -8572855 + AT_rich Low_complexity Low_complexity 1 21 0 301 296 94 50 chr21 36334715 36334773 -8572797 + HAL1b LINE L1 631 685 -663 370 291 37 0 chr21 36335262 36335396 -8572174 + MIR SINE MIR 124 262 0 24 0 0 0 chr21 36335446 36335470 -8572100 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr21 36335675 36335719 -8571851 + AT_rich Low_complexity Low_complexity 1 44 0 491 141 0 24 chr21 36335791 36335876 -8571694 + MER61E LTR ERV1 372 454 -115 219 139 0 0 chr21 36335876 36335912 -8571658 + (A)n Simple_repeat Simple_repeat 1 36 0 1243 221 75 3 chr21 36336278 36336636 -8570934 + L1MB8 LINE L1 4868 5251 -895 1539 149 13 69 chr21 36336636 36336821 -8570749 + MER1B DNA MER1_type 1 149 -2557 2033 91 21 129 chr21 36336821 36337241 -8570329 - THE1C LTR MaLR 0 375 1 1539 149 13 69 chr21 36337241 36337417 -8570153 + MER1B DNA MER1_type 149 333 0 3823 194 55 20 chr21 36337427 36338321 -8569249 + L1MB8 LINE L1 5254 6178 0 2440 68 0 34 chr21 36338338 36338660 -8568910 + AluY SINE Alu 1 311 0 263 246 10 121 chr21 36339724 36339923 -8567647 + L1M4c LINE L1 1271 1447 -4937 339 277 86 36 chr21 36339952 36340172 -8567398 + L1M4c LINE L1 3232 3462 -2920 26 50 0 0 chr21 36340204 36340244 -8567326 + AT_rich Low_complexity Low_complexity 1 40 0 228 246 82 47 chr21 36340256 36340427 -8567143 + L1M4c LINE L1 3527 3703 -2679 315 330 29 0 chr21 36340662 36340868 -8566702 + L1M4c LINE L1 3948 4159 -2223 5480 174 34 9 chr21 36340886 36342159 -8565411 - L1MC2 LINE L1 -6 6338 5030 2353 62 0 26 chr21 36342480 36342788 -8564782 + AluY SINE Alu 1 300 -11 1655 172 10 0 chr21 36342859 36343167 -8564403 + MER83C LTR ERV1 63 373 0 3972 205 57 14 chr21 36343176 36344120 -8563450 + MER83C-int LTR ERV1 40 1008 -3872 268 257 10 10 chr21 36344270 36344371 -8563199 + HERV17 LTR ERV1 8278 8378 -248 * 1438 198 48 21 chr21 36344351 36344685 -8562885 + HERV17 LTR ERV1 4527 4869 -11 1061 199 113 102 chr21 36344687 36345059 -8562511 + MER83B LTR ERV1 3 378 0 369 288 27 7 chr21 36345064 36345210 -8562360 - LTR33 LTR ERVL -319 202 54 743 233 0 2 chr21 36345480 36345939 -8561631 + (CTA)n Simple_repeat Simple_repeat 1 457 0 323 355 123 18 chr21 36346026 36346417 -8561153 + L1M4c LINE L1 4221 4652 -1730 894 217 5 11 chr21 36346499 36346688 -8560882 + AluJo SINE Alu 3 190 -122 205 176 0 0 chr21 36346697 36346731 -8560839 + (TAG)n Simple_repeat Simple_repeat 2 35 0 405 331 43 49 chr21 36346737 36347283 -8560287 + L1M4c LINE L1 4777 5418 -964 224 94 0 0 chr21 36347610 36347642 -8559928 - MIR SINE MIR -106 156 125 204 415 0 0 chr21 36348068 36348162 -8559408 + MIR3 SINE MIR 3 96 -112 400 311 77 81 chr21 36348633 36348833 -8558737 - MIR SINE MIR -1 261 61 2409 73 0 0 chr21 36348833 36349135 -8558435 - AluY SINE Alu -9 302 1 400 311 77 81 chr21 36349135 36349194 -8558376 - MIR SINE MIR -201 61 3 308 233 121 50 chr21 36349438 36349802 -8557768 + L1MEc LINE L1 2021 2375 -3840 1847 170 22 61 chr21 36349949 36350313 -8557257 - MLT2C1 LTR ERVL 0 397 49 2398 80 19 13 chr21 36350313 36350624 -8556946 + AluSq SINE Alu 1 313 0 1847 170 22 61 chr21 36350624 36350670 -8556900 - MLT2C1 LTR ERVL -348 49 3 587 175 36 15 chr21 36350781 36350918 -8556652 - LTR16A LTR ERVL -8 442 303 1851 196 39 7 chr21 36350921 36351334 -8556236 - LTR9 LTR ERV1 0 612 187 183 80 0 0 chr21 36351346 36351371 -8556199 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1115 95 0 0 chr21 36351374 36351522 -8556048 - AluSp SINE Alu -25 288 141 1144 103 5 32 chr21 36351553 36351738 -8555832 - LTR9 LTR ERV1 -432 180 1 454 273 44 22 chr21 36351746 36351929 -8555641 - LTR16A LTR ERVL -152 298 112 190 200 0 25 chr21 36352109 36352149 -8555421 - L2 LINE L2 -1 3312 3274 2123 192 122 11 chr21 36352608 36353076 -8554494 - MLT2B1 LTR ERVL 0 520 1 415 274 84 17 chr21 36353188 36353367 -8554203 + LTR33 LTR ERVL 1 191 -330 778 210 32 18 chr21 36353445 36353664 -8553906 + LTR33 LTR ERVL 298 519 -2 1121 79 0 0 chr21 36354341 36354481 -8553089 + AluY SINE Alu 162 301 -10 21 110 0 0 chr21 36354485 36354576 -8552994 + AT_rich Low_complexity Low_complexity 1 91 0 3632 167 17 20 chr21 36354586 36355286 -8552284 - L1MB3 LINE L1 -9 6174 5477 273 256 23 23 chr21 36355551 36355637 -8551933 - L2 LINE L2 0 3313 3228 300 211 63 11 chr21 36356062 36356157 -8551413 + MER88 LTR ERVL 79 178 -286 * 886 209 83 20 chr21 36356075 36356329 -8551241 - MER74B LTR ERVL -77 545 276 28 29 0 0 chr21 36356329 36356364 -8551206 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr21 36356425 36356451 -8551119 + (CA)n Simple_repeat Simple_repeat 2 27 0 1855 186 70 25 chr21 36357425 36357475 -8550095 - MLT2B2 LTR ERVL 0 515 469 1190 216 52 52 chr21 36357475 36357840 -8549730 + MLT1A1 LTR MaLR 1 365 0 1855 186 70 25 chr21 36357840 36358187 -8549383 - MLT2B2 LTR ERVL -46 469 100 1926 157 103 9 chr21 36358608 36359035 -8548535 + MLT1C LTR MaLR 1 467 0 245 300 65 47 chr21 36359357 36359527 -8548043 - MIR SINE MIR -70 192 20 241 404 34 7 chr21 36359553 36359699 -8547871 + L2 LINE L2 2904 3053 -219 203 244 103 64 chr21 36359858 36359936 -8547634 + L2 LINE L2 3197 3277 -36 190 279 51 0 chr21 36360027 36360106 -8547464 + MIR3 SINE MIR 104 186 -22 183 129 0 0 chr21 36360537 36360568 -8547002 + (TG)n Simple_repeat Simple_repeat 2 32 0 790 242 5 0 chr21 36361506 36361696 -8545874 + MER20 DNA MER1_type 29 219 0 334 160 13 13 chr21 36363410 36363485 -8544085 + (TA)n Simple_repeat Simple_repeat 2 76 0 23 0 0 0 chr21 36363489 36363512 -8544058 + AT_rich Low_complexity Low_complexity 1 23 0 1494 153 44 93 chr21 36363512 36363877 -8543693 - MLT2C1 LTR ERVL -50 347 1 1958 146 3 0 chr21 36364368 36364656 -8542914 - AluSx SINE Alu -23 289 1 258 125 0 0 chr21 36364720 36364768 -8542802 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 2042 124 3 3 chr21 36365305 36365615 -8541955 + AluSg SINE Alu 1 310 0 181 308 15 15 chr21 36366087 36366152 -8541418 + MIR SINE MIR 3 67 -195 324 293 143 8 chr21 36366220 36366353 -8541217 + MIR SINE MIR 88 238 -24 657 158 0 0 chr21 36366585 36366680 -8540890 + FLAM_A SINE Alu 30 124 -18 2192 59 48 0 chr21 36366866 36367137 -8540433 + AluY SINE Alu 15 298 -13 365 266 182 19 chr21 36367194 36367408 -8540162 + L2 LINE L2 3062 3310 -3 303 261 108 23 chr21 36367726 36367856 -8539714 + L1M4 LINE L1 3122 3262 -2884 404 318 30 0 chr21 36368237 36368438 -8539132 + L1M4 LINE L1 3812 4018 -2128 725 249 91 30 chr21 36368704 36369033 -8538537 - LTR37A LTR ERV1 -3 423 75 389 203 290 7 chr21 36370481 36370619 -8536951 - MER45A DNA AcHobo -1 177 1 2029 153 138 5 chr21 36370790 36371168 -8536402 + MSTA LTR MaLR 1 428 0 454 259 51 25 chr21 36371796 36371954 -8535616 - MIR SINE MIR -88 174 13 2755 190 26 6 chr21 36372056 36372603 -8534967 - MER74A LTR ERVL 0 558 1 3321 234 63 24 chr21 36374191 36376457 -8531113 - L1MC1 LINE L1 0 6333 3839 942 150 12 12 chr21 36376474 36376641 -8530929 - L1PA15 LINE L1 -3 6162 5996 1392 136 8 13 chr21 36376641 36376876 -8530694 + L1PA15 LINE L1 5757 5990 -175 877 218 0 71 chr21 36377300 36377525 -8530045 + MER58A DNA MER1_type 1 209 -15 1108 214 62 19 chr21 36378589 36378861 -8528709 + MLT2D LTR ERVL 91 379 -35 312 27 0 0 chr21 36378861 36378898 -8528672 + (CA)n Simple_repeat Simple_repeat 2 38 0 1108 214 62 19 chr21 36378898 36378933 -8528637 + MLT2D LTR ERVL 379 411 -3 1059 256 9 0 chr21 36379119 36379346 -8528224 + MIR SINE MIR 13 241 -21 411 341 81 23 chr21 36380844 36381017 -8526553 + MIR3 SINE MIR 19 201 -7 292 244 128 0 chr21 36381198 36381276 -8526294 + MIR SINE MIR 125 212 -50 1042 307 104 26 chr21 36381949 36382778 -8524792 - L2 LINE L2 -20 3293 2399 270 250 0 12 chr21 36382781 36382861 -8524709 - LTR33A LTR ERVL 0 523 445 878 256 35 28 chr21 36383331 36383585 -8523985 - L2 LINE L2 -970 2344 2089 2191 117 3 0 chr21 36383607 36383906 -8523664 + AluSq SINE Alu 1 300 -13 250 301 151 0 chr21 36383978 36384071 -8523499 - L2 LINE L2 -1197 2117 2011 914 188 18 0 chr21 36384104 36384274 -8523296 - AluSg/x SINE Alu -3 309 137 198 0 0 0 chr21 36384294 36384316 -8523254 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 5519 77 4 4 chr21 36384316 36385074 -8522496 - L1PA10 LINE L1 -18 6150 5390 451 310 78 21 chr21 36385077 36385358 -8522212 - L2 LINE L2 -1366 1948 1652 247 271 165 0 chr21 36388917 36389050 -8518520 + MIR SINE MIR 90 244 -18 863 204 5 73 chr21 36391114 36391216 -8516354 + MER45A DNA AcHobo 1 86 -1495 2174 131 0 0 chr21 36391216 36391521 -8516049 - AluSx SINE Alu -7 305 1 863 204 5 73 chr21 36391521 36391609 -8515961 + MER45A DNA AcHobo 86 178 0 416 293 59 67 chr21 36391617 36391870 -8515700 + MIR SINE MIR 9 259 -3 186 357 71 0 chr21 36392278 36392348 -8515222 + MIR SINE MIR 39 113 -95 1546 176 11 4 chr21 36392415 36392676 -8514894 - AluJb SINE Alu -49 263 1 226 153 194 0 chr21 36392750 36392822 -8514748 + Tigger3(Golem) DNA MER2_type 2552 2637 -392 360 221 21 32 chr21 36392933 36393028 -8514542 + MER103 DNA DNA 66 159 -7 435 246 0 0 chr21 36393371 36393513 -8514057 + CT-rich Low_complexity Low_complexity 3 144 0 232 346 40 20 chr21 36393905 36394006 -8513564 - MIR SINE MIR -85 123 21 2805 157 32 6 chr21 36394382 36394848 -8512722 + L1PA16 LINE L1 5684 6161 -5 787 248 59 14 chr21 36396816 36397038 -8510532 - MIR SINE MIR -25 237 6 888 194 28 60 chr21 36397064 36397280 -8510290 + MER20 DNA MER1_type 6 214 -5 265 245 16 69 chr21 36397749 36397937 -8509633 + (CATTA)n Simple_repeat Simple_repeat 3 180 0 262 287 81 0 chr21 36399489 36399576 -8507994 - MIR3 SINE MIR -48 160 67 351 207 73 12 chr21 36399988 36400070 -8507500 + MER94 DNA DNA 2 88 -46 730 261 5 21 chr21 36400958 36401146 -8506424 - MIR SINE MIR -5 257 73 397 144 221 29 chr21 36401900 36402004 -8505566 - MER20 DNA MER1_type 0 219 96 3280 121 6 56 chr21 36402009 36402360 -8505210 - LTR26B LTR ERV1 0 531 215 2515 67 0 0 chr21 36402360 36402659 -8504911 - AluY SINE Alu -12 299 1 3280 121 6 56 chr21 36402659 36402846 -8504724 - LTR26B LTR ERV1 -316 215 20 1473 185 161 61 chr21 36403732 36404248 -8503322 + MLT1E1 LTR MaLR 3 505 0 2474 216 50 29 chr21 36404277 36404822 -8502748 + MER74A LTR ERVL 3 558 0 24 32 0 0 chr21 36405496 36405527 -8502043 + AT_rich Low_complexity Low_complexity 1 31 0 460 331 121 21 chr21 36406286 36406618 -8500952 + L2 LINE L2 2948 3312 -1 313 327 10 0 chr21 36406618 36406722 -8500848 + GA-rich Low_complexity Low_complexity 1 105 0 320 269 51 40 chr21 36406797 36406972 -8500598 + MIR SINE MIR 84 260 -2 569 183 0 0 chr21 36407112 36407194 -8500376 - AluJ/FLAM SINE Alu -229 83 2 859 150 0 11 chr21 36408213 36408393 -8499177 + (GGA)n Simple_repeat Simple_repeat 3 180 0 508 28 0 75 chr21 36408385 36408492 -8499078 + (GAA)n Simple_repeat Simple_repeat 1 99 0 * 252 271 82 53 chr21 36409172 36409342 -8498228 - L2 LINE L2 -192 3080 2906 225 263 114 51 chr21 36409575 36409750 -8497820 - L2 LINE L2 -576 2738 2553 328 309 94 22 chr21 36410149 36410330 -8497240 - MIR SINE MIR -59 203 10 561 231 120 83 chr21 36410517 36410759 -8496811 - MIR SINE MIR -6 256 6 934 294 85 62 chr21 36411134 36412042 -8495528 + L1ME LINE L1 141 1069 -5136 417 299 24 0 chr21 36412032 36412199 -8495371 + L1ME LINE L1 2170 2340 -4056 * 286 139 0 0 chr21 36412202 36412245 -8495325 - MLT2D LTR ERVL -4 393 351 198 0 0 0 chr21 36412260 36412282 -8495288 + (GA)n Simple_repeat Simple_repeat 1 22 0 2045 185 15 26 chr21 36412285 36412674 -8494896 - MLT2D LTR ERVL -20 394 10 382 200 33 33 chr21 36414134 36414224 -8493346 + L1MB7 LINE L1 4903 4992 -1154 * 1689 16 0 0 chr21 36414219 36414407 -8493163 - L1PA4 LINE L1 -209 5946 5759 1604 28 0 0 chr21 36414407 36414583 -8492987 + L1PA4 LINE L1 5976 6152 -3 4908 169 66 7 chr21 36414586 36414718 -8492852 + L1MB7 LINE L1 4989 5112 -1072 261 0 0 0 chr21 36414718 36414747 -8492823 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4908 169 66 7 chr21 36414747 36415711 -8491859 + L1MB7 LINE L1 5112 6175 -9 588 276 102 9 chr21 36415801 36416240 -8491330 + L1ME LINE L1 2998 3477 -2738 250 250 197 0 chr21 36416267 36416343 -8491227 + L1MC4 LINE L1 7808 7898 -144 738 113 0 19 chr21 36417180 36417286 -8490284 - U13 snRNA snRNA 0 104 1 309 288 38 57 chr21 36417563 36417733 -8489837 + MIR3 SINE MIR 29 197 -11 267 300 55 13 chr21 36417744 36417893 -8489677 + MIR SINE MIR 2 162 -46 5099 26 2 0 chr21 36418500 36419157 -8488413 - L1P1 LINE L1 -690 5465 4803 3594 3 0 0 chr21 36419157 36419530 -8488040 + L1PA2 LINE L1 5779 6152 -3 958 179 15 35 chr21 36419682 36419883 -8487687 + MER58A DNA MER1_type 28 224 0 2723 253 48 14 chr21 36419884 36420627 -8486943 + L1ME3 LINE L1 5352 6120 -42 328 221 115 0 chr21 36422044 36422166 -8485404 + Charlie4 DNA MER1_type 1762 1897 -64 2193 146 12 0 chr21 36422168 36422510 -8485060 - MLT1B LTR MaLR -1 389 44 2021 122 0 61 chr21 36422518 36422870 -8484700 - AluSx SINE Alu 0 312 1 6309 113 25 0 chr21 36422874 36423804 -8483766 - L1PA15 LINE L1 0 6165 5237 2678 153 22 0 chr21 36423804 36424204 -8483366 + MSTA LTR MaLR 20 428 0 4399 180 22 6 chr21 36424204 36425083 -8482487 - L1PA15 LINE L1 -903 5243 4351 327 155 95 24 chr21 36425611 36425695 -8481875 - MIR SINE MIR -13 249 160 391 263 53 26 chr21 36425918 36426108 -8481462 + LTR33 LTR ERVL 306 500 -21 248 155 31 52 chr21 36426412 36426509 -8481061 + (TTTA)n Simple_repeat Simple_repeat 2 96 0 15426 165 31 11 chr21 36426531 36430885 -8476685 - L1PB1 LINE L1 0 6867 2429 2954 111 15 0 chr21 36430885 36431292 -8476278 + MLT2A2 LTR ERVL 1 413 -40 984 109 4 0 chr21 36431293 36431561 -8476009 + (TCTA)n Simple_repeat Simple_repeat 1 269 0 350 25 0 0 chr21 36431561 36431601 -8475969 + MLT2A2 LTR ERVL 414 453 0 6380 157 62 9 chr21 36431601 36433734 -8473836 - L1PB1 LINE L1 -4453 2410 6 682 150 0 53 chr21 36437138 36437325 -8470245 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 596 204 17 12 chr21 36437355 36437527 -8470043 + CT-rich Low_complexity Low_complexity 1 173 0 * 774 137 11 38 chr21 36437514 36437697 -8469873 + C-rich Low_complexity Low_complexity 3 180 0 287 231 0 39 chr21 36437697 36437775 -8469795 + CT-rich Low_complexity Low_complexity 4 78 0 25 65 0 0 chr21 36438631 36438677 -8468893 + AT_rich Low_complexity Low_complexity 1 46 0 1762 241 40 30 chr21 36439209 36439711 -8467859 + L1MC4 LINE L1 7308 7814 -228 1340 226 84 31 chr21 36440130 36440546 -8467024 - MLT1C LTR MaLR -29 438 1 485 258 8 23 chr21 36441579 36441711 -8465859 + MIR SINE MIR 6 135 -127 2014 131 51 46 chr21 36441711 36442084 -8465486 + THE1C LTR MaLR 1 375 0 280 196 59 29 chr21 36443463 36443565 -8464005 - L1ME4a LINE L1 0 6121 6017 306 297 102 8 chr21 36444999 36445117 -8462453 - MER5A DNA MER1_type -57 132 4 1839 221 84 7 chr21 36445569 36445999 -8461571 - MLT1C LTR MaLR 0 467 5 417 340 36 32 chr21 36447295 36447548 -8460022 - L1MEd LINE L1 -5499 620 367 1408 174 57 8 chr21 36447683 36447948 -8459622 + AluJo SINE Alu 25 302 -10 2904 0 0 6 chr21 36448167 36448503 -8459067 - AluYa5 SINE Alu 0 334 1 2599 111 18 8 chr21 36449421 36449816 -8457754 + L1PA14 LINE L1 5660 6058 -103 3917 104 7 21 chr21 36449829 36450408 -8457162 + LTR4 LTR ERV1 26 596 0 760 95 0 0 chr21 36450408 36450513 -8457057 + L1PA14 LINE L1 6055 6159 -2 480 226 40 52 chr21 36452052 36452341 -8455229 - MER4A-int LTR ERV1 -6123 475 110 1688 143 6 31 chr21 36452443 36452781 -8454789 - MER4A LTR ERV1 -17 647 261 279 154 346 13 chr21 36452776 36452854 -8454716 - MER4A LTR ERV1 -560 104 1 * 890 234 37 32 chr21 36452916 36453134 -8454436 + MER20 DNA MER1_type 1 219 0 1562 174 55 27 chr21 36453210 36453577 -8453993 - L1MB8 LINE L1 -1 6413 6037 1164 206 14 52 chr21 36453594 36453885 -8453685 - LTR4 LTR ERV1 0 596 317 285 238 16 0 chr21 36453901 36453964 -8453606 - LTR4 LTR ERV1 -239 357 294 7227 90 1 3 chr21 36454115 36455035 -8452535 - HERV3 LTR ERV1 0 8426 7509 * 18836 106 5 6 chr21 36455028 36457559 -8450011 - HERV3 LTR ERV1 -2126 6300 3774 9711 135 17 8 chr21 36457530 36458955 -8448615 - HERV3 LTR ERV1 -6987 1439 2 * 1197 158 38 76 chr21 36458955 36459246 -8448324 - LTR4 LTR ERV1 0 596 317 272 254 16 0 chr21 36459262 36459325 -8448245 - LTR4 LTR ERV1 -239 357 294 10048 225 64 30 chr21 36459461 36463168 -8444402 - L1MB8 LINE L1 -400 6020 2180 350 271 8 8 chr21 36463174 36463303 -8444267 + L1M4 LINE L1 3244 3372 -2774 311 285 63 85 chr21 36463298 36463614 -8443956 - L1MEc LINE L1 -4356 2040 1732 * 1543 86 101 0 chr21 36463721 36463930 -8443640 - MER30 DNA MER1_type 0 230 1 2163 128 0 0 chr21 36464823 36465128 -8442442 + AluSx SINE Alu 1 305 -7 353 283 86 52 chr21 36466465 36466698 -8440872 - MLT1J LTR MaLR -79 432 192 * 1140 184 39 29 chr21 36466692 36467051 -8440519 - LTR52 LTR ERVL -19 402 1 209 189 0 0 chr21 36467473 36467535 -8440035 + (CAA)n Simple_repeat Simple_repeat 1 62 0 2091 131 3 10 chr21 36471236 36471541 -8436029 + AluSx SINE Alu 1 303 -9 301 298 48 0 chr21 36472391 36472495 -8435075 + L2 LINE L2 3198 3306 -7 231 303 57 14 chr21 36472554 36472659 -8434911 + MIR SINE MIR 50 157 -51 1089 219 5 31 chr21 36472931 36472994 -8434576 - MER58A DNA MER1_type -2199 221 158 2171 90 32 0 chr21 36472994 36473273 -8434297 - AluSq SINE Alu -25 288 1 1089 219 5 31 chr21 36473273 36473433 -8434137 - MER58A DNA MER1_type -2262 158 4 547 253 72 18 chr21 36474790 36474956 -8432614 + MER5B DNA MER1_type 4 178 0 713 183 11 17 chr21 36475112 36475292 -8432278 + GA-rich Low_complexity Low_complexity 2 180 0 410 351 66 0 chr21 36475455 36475606 -8431964 + MIR SINE MIR 8 168 -94 1224 129 0 8 chr21 36476539 36477187 -8430383 + (TGGA)n Simple_repeat Simple_repeat 1 642 0 272 377 55 0 chr21 36478441 36478587 -8428983 - MIR SINE MIR -60 202 49 482 254 9 9 chr21 36481266 36481380 -8426190 + MER81 DNA DNA 1 114 0 212 328 75 83 chr21 36481767 36482008 -8425562 + L2 LINE L2 2943 3181 -91 393 315 138 35 chr21 36482577 36482831 -8424739 + LTR16A1 LTR ERVL 178 457 0 335 285 103 12 chr21 36484198 36484337 -8423233 + MIR SINE MIR 20 162 -66 379 326 99 43 chr21 36484533 36484837 -8422733 - L2 LINE L2 -17 3255 2935 180 0 0 0 chr21 36485912 36485932 -8421638 + (TA)n Simple_repeat Simple_repeat 1 20 0 348 240 0 0 chr21 36486402 36486502 -8421068 + CT-rich Low_complexity Low_complexity 1 100 0 260 53 26 0 chr21 36488556 36488594 -8418976 + (TG)n Simple_repeat Simple_repeat 1 39 0 797 236 11 6 chr21 36490780 36490954 -8416616 - MER69A DNA AcHobo -2 175 1 2184 119 3 0 chr21 36492235 36492529 -8415041 - AluSx SINE Alu -17 295 1 337 250 58 17 chr21 36492979 36493099 -8414471 - MER103 DNA DNA -10 156 32 380 291 73 65 chr21 36495629 36495691 -8411879 - MIR SINE MIR -6 256 196 4569 55 2 36 chr21 36495691 36496271 -8411299 - L1PA7 LINE L1 -2 6152 5593 380 291 73 65 chr21 36496271 36496455 -8411115 - MIR SINE MIR -66 196 8 258 32 0 0 chr21 36498102 36498133 -8409437 + (A)n Simple_repeat Simple_repeat 1 31 0 202 336 10 29 chr21 36498239 36498343 -8409227 + MIR SINE MIR 28 129 -133 180 0 0 0 chr21 36498783 36498803 -8408767 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 180 138 0 0 chr21 36499718 36499747 -8407823 - L3 LINE CR1 -345 1232 1204 351 217 0 14 chr21 36499962 36500031 -8407539 - MIR SINE MIR -61 147 85 216 258 30 15 chr21 36500131 36500197 -8407373 - MIR SINE MIR -194 68 2 317 345 17 17 chr21 36500763 36500879 -8406691 - MIR3 SINE MIR -11 197 82 363 172 0 0 chr21 36503364 36503422 -8404148 - MIR3 SINE MIR -26 182 125 359 282 94 0 chr21 36504029 36504146 -8403424 + L2 LINE L2 3182 3309 -4 1116 80 13 0 chr21 36504950 36505100 -8402470 + AluSg/x SINE Alu 158 309 -1 398 288 17 8 chr21 36505174 36505292 -8402278 - MER5B DNA MER1_type -59 119 1 209 343 55 0 chr21 36505523 36505596 -8401974 - L2 LINE L2 -43 3229 3153 1316 118 14 45 chr21 36506061 36506281 -8401289 + L1PA14 LINE L1 5947 6159 -2 189 0 0 0 chr21 36506579 36506600 -8400970 + (TG)n Simple_repeat Simple_repeat 2 22 0 277 287 148 0 chr21 36507454 36507562 -8400008 - L2 LINE L2 -15 3257 3134 319 342 43 0 chr21 36507848 36507965 -8399605 + MIR SINE MIR 16 137 -125 181 312 251 28 chr21 36508777 36509168 -8398402 - L2 LINE L2 -976 2338 1861 808 215 24 49 chr21 36510349 36510554 -8397016 + MER105 DNA DNA 4 203 -1 428 268 188 0 chr21 36510563 36510701 -8396869 + MER5A DNA MER1_type 11 174 -15 5348 134 28 7 chr21 36510828 36511711 -8395859 - L1PA16 LINE L1 -1 6165 5264 309 319 43 9 chr21 36512457 36512573 -8394997 - L2 LINE L2 -233 3039 2920 539 298 81 62 chr21 36513031 36513400 -8394170 - L1ME LINE L1 -297 5824 5449 252 323 109 32 chr21 36513430 36513715 -8393855 + L2 LINE L2 2058 2364 -950 452 344 66 53 chr21 36513894 36514382 -8393188 + L2 LINE L2 2439 2932 -382 248 413 33 0 chr21 36514489 36514610 -8392960 + L2 LINE L2 3134 3258 -14 568 223 207 16 chr21 36514885 36515073 -8392497 - MIR SINE MIR -37 225 2 181 324 101 43 chr21 36515107 36515246 -8392324 - L2 LINE L2 -236 3036 2890 2376 68 0 0 chr21 36515513 36515833 -8391737 + AluY SINE Alu 1 320 0 1273 236 146 16 chr21 36516293 36516733 -8390837 + Charlie4a DNA MER1_type 12 508 0 830 137 36 0 chr21 36517066 36517205 -8390365 + MER53 DNA DNA 46 189 0 2608 58 0 3 chr21 36517582 36517892 -8389678 - AluY SINE Alu -2 309 1 2227 96 17 7 chr21 36518469 36518770 -8388800 + AluSx SINE Alu 1 304 -8 2275 116 0 0 chr21 36519002 36519303 -8388267 + AluSx SINE Alu 1 301 -11 355 271 77 52 chr21 36520118 36520273 -8387297 - MER5A DNA MER1_type -10 179 21 334 385 31 8 chr21 36520377 36520507 -8387063 + MIR3 SINE MIR 28 160 -48 270 0 0 0 chr21 36520547 36520577 -8386993 + (CA)n Simple_repeat Simple_repeat 2 31 0 363 214 0 12 chr21 36520591 36520675 -8386895 + MER103 DNA DNA 44 126 -40 858 244 6 6 chr21 36521187 36521367 -8386203 + MER5A DNA MER1_type 3 182 -7 386 268 87 8 chr21 36521417 36521544 -8386026 + MIR SINE MIR 113 249 -13 412 270 66 43 chr21 36521647 36521858 -8385712 + MIR SINE MIR 11 226 -36 2205 119 0 0 chr21 36522242 36522537 -8385033 + AluSx SINE Alu 5 299 -13 385 319 98 27 chr21 36522644 36522982 -8384588 - MLT1I LTR MaLR -7 402 41 3796 121 6 0 chr21 36524611 36525122 -8382448 + MER75 DNA T2_type 1 514 0 335 154 69 8 chr21 36525607 36525860 -8381710 + (TAGA)n Simple_repeat Simple_repeat 1 268 0 523 289 103 10 chr21 36528438 36528642 -8378928 - MIR SINE MIR -38 224 2 21 0 0 0 chr21 36530598 36530619 -8376951 + AT_rich Low_complexity Low_complexity 1 21 0 508 261 157 13 chr21 36530655 36530808 -8376762 + MER5A DNA MER1_type 10 184 -5 258 116 0 0 chr21 36531498 36531541 -8376029 + (CA)n Simple_repeat Simple_repeat 1 43 0 266 140 0 0 chr21 36531546 36531596 -8375974 - MER4-int LTR ERV1 -5437 1161 1112 204 179 0 0 chr21 36531596 36531635 -8375935 + (CA)n Simple_repeat Simple_repeat 1 39 0 2791 23 0 0 chr21 36533654 36533959 -8373611 - L1PA4 LINE L1 -3 6152 5848 1975 49 11 26 chr21 36534215 36534481 -8373089 - AluY SINE Alu 0 311 50 1370 96 0 0 chr21 36534484 36534661 -8372909 + AluSq SINE Alu 136 312 -1 1950 139 38 0 chr21 36537165 36537453 -8370117 - AluSx SINE Alu -13 299 1 488 268 27 45 chr21 36537713 36537933 -8369637 - MARNA DNA Mariner -68 518 303 2228 120 0 0 chr21 36538581 36538889 -8368681 - AluSq SINE Alu -5 308 1 742 161 62 0 chr21 36538895 36539056 -8368514 - L1MA7 LINE L1 -3 6288 6118 1734 173 13 7 chr21 36539552 36539859 -8367711 - AluJb SINE Alu -3 309 1 293 289 33 24 chr21 36540319 36540426 -8367144 - MIR SINE MIR -85 123 17 1653 148 142 58 chr21 36541706 36542137 -8365433 - MLT1C LTR MaLR 0 467 1 603 305 90 59 chr21 36542848 36543419 -8364151 + L2 LINE L2 2417 3007 -265 2376 155 74 67 chr21 36543517 36544041 -8363529 + LTR1 LTR ERV1 1 528 -257 808 227 38 11 chr21 36544043 36544228 -8363342 + LTR1B LTR ERV1 637 826 0 330 177 52 83 chr21 36544379 36544475 -8363095 - MER96B DNA MER1_type? -9 408 316 304 222 63 0 chr21 36544548 36544611 -8362959 + L1 LINE L1 3069 3135 -3011 2306 281 56 38 chr21 36544656 36546043 -8361527 + L1ME1 LINE L1 47 1436 -4644 316 230 46 35 chr21 36546045 36546132 -8361438 - L1MC4 LINE L1 -1339 6703 6616 624 271 63 57 chr21 36546132 36546557 -8361013 + L1ME1 LINE L1 1483 1910 -4351 3161 220 69 72 chr21 36546573 36547648 -8359922 + L1ME1 LINE L1 4189 5266 -834 1899 44 0 0 chr21 36547648 36547876 -8359694 - AluY SINE Alu -12 299 72 3161 220 69 72 chr21 36547876 36548231 -8359339 + L1ME1 LINE L1 5266 5621 -479 1071 213 138 10 chr21 36548231 36548536 -8359034 + MER2 DNA MER2_type 1 344 0 3161 220 69 72 chr21 36548536 36548611 -8358959 + L1ME1 LINE L1 5621 5695 -405 2091 108 0 7 chr21 36548611 36548916 -8358654 + AluSg SINE Alu 1 303 -7 3161 220 69 72 chr21 36548916 36549308 -8358262 + L1ME1 LINE L1 5695 6095 -5 318 286 175 7 chr21 36549309 36549463 -8358107 - MER5A DNA MER1_type -3 186 7 730 250 92 29 chr21 36549623 36549863 -8357707 - MIR SINE MIR 0 262 8 202 257 0 86 chr21 36549939 36550009 -8357561 - L2 LINE L2 -1 3271 3208 2180 137 126 5 chr21 36550395 36550776 -8356794 - MSTA LTR MaLR -1 427 1 226 308 11 33 chr21 36550983 36551074 -8356496 + L3b LINE CR1 1340 1428 -155 327 214 44 60 chr21 36552722 36552855 -8354715 + MLT1J2 LTR MaLR 66 197 -249 286 172 8 180 chr21 36552898 36553020 -8354550 + MLT1J2 LTR MaLR 350 450 0 1915 246 97 0 chr21 36553141 36553658 -8353912 - MLT1F1 LTR MaLR 0 567 1 233 235 112 31 chr21 36555298 36555396 -8352174 + MIR SINE MIR 17 122 -86 641 275 49 45 chr21 36555648 36555707 -8351863 - MIR SINE MIR -5 257 200 2571 201 24 0 chr21 36555707 36556214 -8351356 - LTR53 LTR ERVL 0 519 1 641 275 49 45 chr21 36556214 36556401 -8351169 - MIR SINE MIR -62 200 10 355 258 165 0 chr21 36556844 36556941 -8350629 - MIR3 SINE MIR -31 177 65 239 219 68 41 chr21 36556995 36557068 -8350502 + LTR67 LTR ERVL 80 154 -403 2327 78 0 3 chr21 36557148 36557481 -8350089 + AluY SINE Alu 1 332 0 231 36 0 0 chr21 36557486 36557514 -8350056 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 379 292 139 23 chr21 36557772 36557917 -8349653 + MIR SINE MIR 22 201 -61 3299 118 17 43 chr21 36557917 36558457 -8349113 - MER1A DNA MER1_type -1 526 1 379 292 139 23 chr21 36558457 36558527 -8349043 + MIR SINE MIR 201 262 0 379 265 39 0 chr21 36558631 36558733 -8348837 - MER5A DNA MER1_type -80 109 4 1726 190 68 42 chr21 36559491 36559849 -8347721 - MSTD LTR MaLR -2 394 24 1937 167 100 0 chr21 36559849 36560238 -8347332 + MSTC LTR MaLR 1 428 0 1726 190 68 42 chr21 36560238 36560263 -8347307 - MSTD LTR MaLR -372 24 1 6398 236 80 26 chr21 36560268 36561910 -8345660 - MSTD-int LTR MaLR -4 1731 2 1700 194 89 14 chr21 36561915 36562275 -8345295 - MSTD LTR MaLR -9 387 1 473 294 19 50 chr21 36562603 36562836 -8344734 - MIR SINE MIR 0 262 33 1250 221 125 55 chr21 36564889 36565306 -8342264 - MLT1C LTR MaLR -16 451 6 2005 129 156 5 chr21 36566082 36566454 -8341116 - MSTA LTR MaLR 0 428 1 1991 171 35 3 chr21 36566825 36567199 -8340371 - MLT1B LTR MaLR -4 386 1 190 333 0 15 chr21 36567498 36567564 -8340006 - L2 LINE L2 -2 3270 3206 557 263 40 25 chr21 36567943 36568141 -8339429 - LTR16C LTR ERVL 0 491 291 1476 291 109 36 chr21 36568144 36568587 -8338983 + HERVL LTR ERVL 1872 2384 -2612 3526 141 37 6 chr21 36568587 36569127 -8338443 + MER41D LTR ERV1 1 557 0 1476 291 109 36 chr21 36569127 36569368 -8338202 + HERVL LTR ERVL 2384 2606 -2390 1144 202 45 45 chr21 36569370 36569637 -8337933 - MLT1B LTR MaLR -121 269 3 603 277 22 38 chr21 36569666 36569850 -8337720 + HERVL LTR ERVL 4068 4248 -1406 836 285 56 14 chr21 36569853 36570162 -8337408 + LTR16A LTR ERVL 130 491 0 561 306 69 9 chr21 36570236 36570468 -8337102 + Charlie2a DNA MER1_type 229 474 -2388 * 767 255 81 0 chr21 36570466 36570701 -8336869 + Charlie2a DNA MER1_type 733 986 -1876 23 68 0 0 chr21 36571975 36572019 -8335551 + AT_rich Low_complexity Low_complexity 1 44 0 207 176 0 0 chr21 36573852 36573886 -8333684 + (ATG)n Simple_repeat Simple_repeat 3 36 0 622 264 142 74 chr21 36574769 36575163 -8332407 + LTR16A LTR ERVL 22 442 -8 328 321 90 12 chr21 36575300 36575471 -8332099 + MIR SINE MIR 4 184 -78 285 229 0 0 chr21 36575840 36575901 -8331669 - L2 LINE L2 -258 3055 2995 331 227 130 84 chr21 36576218 36576311 -8331259 - MIR SINE MIR -2 260 156 2080 110 3 0 chr21 36576311 36576603 -8330967 + AluSx SINE Alu 1 293 -19 331 227 130 84 chr21 36576603 36576663 -8330907 - MIR SINE MIR -106 156 100 184 268 268 0 chr21 36576725 36576807 -8330763 - L2 LINE L2 -670 2644 2541 332 259 92 80 chr21 36577283 36577461 -8330109 + MIR SINE MIR 2 170 -38 229 298 0 85 chr21 36579638 36579732 -8327838 - L2 LINE L2 0 3313 3228 183 299 156 0 chr21 36580507 36580584 -8326986 - MER5B DNA MER1_type -2 176 88 218 222 63 0 chr21 36581027 36581090 -8326480 + MER5A DNA MER1_type 39 105 -84 487 191 32 19 chr21 36581208 36581365 -8326205 + GA-rich Low_complexity Low_complexity 3 161 0 247 208 0 19 chr21 36581378 36581431 -8326139 + GA-rich Low_complexity Low_complexity 1 52 0 207 325 56 56 chr21 36581900 36582026 -8325544 + MIR3 SINE MIR 3 128 -80 724 246 79 17 chr21 36582720 36582960 -8324610 + MIR SINE MIR 7 261 -1 182 284 40 54 chr21 36583100 36583174 -8324396 - MER5A DNA MER1_type -116 73 1 180 0 0 0 chr21 36584201 36584221 -8323349 + (CA)n Simple_repeat Simple_repeat 2 21 0 207 204 0 0 chr21 36584520 36584574 -8322996 + GA-rich Low_complexity Low_complexity 1 54 0 286 225 14 0 chr21 36586029 36586171 -8321399 + (CA)n Simple_repeat Simple_repeat 2 145 0 204 200 0 0 chr21 36586252 36586307 -8321263 + (CA)n Simple_repeat Simple_repeat 2 56 0 371 377 13 7 chr21 36587025 36587179 -8320391 + MIR SINE MIR 49 203 -59 232 297 76 56 chr21 36587484 36587620 -8319950 - MER5A DNA MER1_type -13 169 2 783 245 53 12 chr21 36587706 36587951 -8319619 + L1MC4a LINE L1 5679 5933 -1875 705 264 118 56 chr21 36588907 36589286 -8318284 - L2 LINE L2 -309 3004 2626 405 311 61 26 chr21 36589409 36589673 -8317897 + MLT1I LTR MaLR 98 370 -39 414 243 183 94 chr21 36589812 36590047 -8317523 - L2 LINE L2 -957 2357 2102 2091 132 81 35 chr21 36590139 36590487 -8317083 + THE1B LTR MaLR 1 364 0 2134 120 0 0 chr21 36592507 36592814 -8314756 - AluSx SINE Alu 0 307 1 869 323 50 30 chr21 36592970 36593192 -8314378 + MLT1K LTR MaLR 95 330 -258 1204 192 23 5 chr21 36593192 36593406 -8314164 + MER20 DNA MER1_type 1 218 -1 869 323 50 30 chr21 36593406 36593579 -8313991 + MLT1K LTR MaLR 330 498 -90 5627 69 0 6 chr21 36594102 36594785 -8312785 + L1PA8 LINE L1 5494 6172 0 21 0 0 0 chr21 36594785 36594806 -8312764 + AT_rich Low_complexity Low_complexity 1 21 0 304 344 26 26 chr21 36594856 36595007 -8312563 + MER91A DNA MER1_type 20 170 -26 209 231 62 15 chr21 36595011 36595076 -8312494 + MER91A DNA MER1_type 127 194 -2 286 295 30 75 chr21 36595125 36595325 -8312245 + MLT1J LTR MaLR 84 274 -237 1082 193 156 40 chr21 36595784 36596111 -8311459 + MLT2C1 LTR ERVL 25 389 -8 414 270 113 19 chr21 36596201 36596360 -8311210 + MLT1J LTR MaLR 335 508 -3 297 275 55 11 chr21 36596370 36596461 -8311109 - MIR SINE MIR -101 161 67 1211 200 90 8 chr21 36596817 36597256 -8310314 - MLT1F1 LTR MaLR -5 562 31 231 50 0 75 chr21 36597512 36597552 -8310018 - MST-int LTR MaLR -936 715 679 279 307 181 10 chr21 36597817 36598022 -8309548 - L1ME3A LINE L1 -190 5980 5741 695 108 9 5 chr21 36598061 36598160 -8309410 - MSTA LTR MaLR -332 96 6 6860 86 11 14 chr21 36598160 36599661 -8307909 - L1PA13 LINE L1 0 6163 4664 3137 279 86 36 chr21 36599670 36602134 -8305436 - L1ME3A LINE L1 -683 5481 2894 247 296 64 32 chr21 36603134 36603259 -8304311 + MIR SINE MIR 45 173 -35 204 276 152 19 chr21 36603247 36603352 -8304218 + L2 LINE L2 3153 3271 -1 * 3869 100 2 0 chr21 36603743 36604234 -8303336 - LTR22B LTR ERVK 0 492 1 187 377 140 0 chr21 36604933 36605047 -8302523 + L2 LINE L2 3141 3270 -2 252 234 190 58 chr21 36606632 36606769 -8300801 + MIR SINE MIR 84 238 -24 228 248 83 91 chr21 36608026 36608147 -8299423 - L2 LINE L2 -1 3271 3152 249 344 10 0 chr21 36608152 36608248 -8299322 - L3 LINE CR1 -402 1175 1079 352 351 100 13 chr21 36608690 36608929 -8298641 - L3 LINE CR1 -794 783 524 569 118 82 0 chr21 36609295 36609380 -8298190 - AluJo SINE Alu -16 296 205 * 827 116 77 65 chr21 36609375 36609530 -8298040 - AluJo SINE Alu -143 169 13 22 0 0 0 chr21 36611764 36611786 -8295784 + AT_rich Low_complexity Low_complexity 1 22 0 215 205 0 0 chr21 36612218 36612257 -8295313 + CT-rich Low_complexity Low_complexity 2 40 0 891 272 81 37 chr21 36613551 36613985 -8293585 + LTR16A1 LTR ERVL 4 456 -1 570 253 54 21 chr21 36616961 36617147 -8290423 + MIR SINE MIR 2 193 -69 509 276 191 5 chr21 36617306 36617516 -8290054 - MIR SINE MIR -5 257 9 463 268 95 10 chr21 36618726 36618896 -8288674 + MIR SINE MIR 2 181 -62 235 160 0 40 chr21 36619320 36619370 -8288200 - L2 LINE L2 0 3313 3266 1857 158 17 96 chr21 36619919 36620338 -8287232 + MLT1B LTR MaLR 5 390 0 180 292 104 49 chr21 36620689 36620833 -8286737 - MIR3 SINE MIR -18 190 39 718 185 123 12 chr21 36623792 36623894 -8283676 + MER5A DNA MER1_type 4 93 -96 2391 87 0 0 chr21 36623894 36624203 -8283367 - AluY SINE Alu -2 309 1 718 185 123 12 chr21 36624203 36624262 -8283308 + MER5A DNA MER1_type 93 183 -6 34 24 0 0 chr21 36626450 36626491 -8281079 + AT_rich Low_complexity Low_complexity 1 41 0 2436 104 0 0 chr21 36626869 36627178 -8280392 + AluSc SINE Alu 1 309 0 22 35 0 0 chr21 36628466 36628495 -8279075 + AT_rich Low_complexity Low_complexity 1 29 0 188 170 226 0 chr21 36629444 36629497 -8278073 + L2 LINE L2 3190 3254 -18 342 298 25 50 chr21 36629516 36629637 -8277933 + L2 LINE L2 3193 3310 -3 22 0 0 0 chr21 36631111 36631133 -8276437 + AT_rich Low_complexity Low_complexity 1 22 0 273 119 0 0 chr21 36632264 36632306 -8275264 + (A)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr21 36633571 36633595 -8273975 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 36633639 36633660 -8273910 + AT_rich Low_complexity Low_complexity 1 21 0 306 238 98 49 chr21 36634149 36634271 -8273299 + MIR SINE MIR 20 147 -61 208 151 19 19 chr21 36634526 36634579 -8272991 + CT-rich Low_complexity Low_complexity 1 53 0 608 211 21 7 chr21 36634997 36635139 -8272431 - MER5B DNA MER1_type -27 151 8 517 158 10 20 chr21 36635162 36635263 -8272307 + MER5A DNA MER1_type 10 109 -80 2562 59 0 10 chr21 36635422 36635727 -8271843 + AluY SINE Alu 1 302 -9 985 245 88 73 chr21 36636562 36637097 -8270473 + L1ME4a LINE L1 5532 6074 -47 239 171 40 26 chr21 36637185 36637261 -8270309 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 214 241 0 0 chr21 36637295 36637349 -8270221 + A-rich Low_complexity Low_complexity 2 55 0 41 58 0 0 chr21 36637360 36637429 -8270141 + AT_rich Low_complexity Low_complexity 1 69 0 193 104 30 45 chr21 36637429 36637496 -8270074 + (TA)n Simple_repeat Simple_repeat 2 67 0 2435 84 3 10 chr21 36638753 36639063 -8268507 + AluSp SINE Alu 1 308 -5 218 408 8 0 chr21 36639233 36639363 -8268207 - L2 LINE L2 -386 2928 2798 572 271 120 53 chr21 36640764 36640864 -8266706 - L1MDa LINE L1 -3279 3261 3169 1986 113 36 0 chr21 36640864 36641159 -8266411 - AluSx SINE Alu 0 305 1 572 271 120 53 chr21 36641159 36641782 -8265788 - L1MDa LINE L1 -3371 3169 2484 708 283 66 33 chr21 36642229 36642561 -8265009 - L1MDa LINE L1 -5253 1277 935 729 301 74 19 chr21 36642600 36642869 -8264701 - L1MDa LINE L1 -5799 731 448 207 374 14 33 chr21 36643364 36643509 -8264061 + L2 LINE L2 2077 2218 -1096 2071 147 48 67 chr21 36643509 36643985 -8263585 - MLT1C LTR MaLR 0 467 1 207 374 14 33 chr21 36643985 36644053 -8263517 + L2 LINE L2 2218 2286 -1028 628 283 56 0 chr21 36644066 36644264 -8263306 - MIR SINE MIR -22 240 32 620 289 23 30 chr21 36644660 36644923 -8262647 + MIR SINE MIR 2 262 0 264 336 45 0 chr21 36645245 36645355 -8262215 + MIR3 SINE MIR 86 200 -8 2250 110 0 7 chr21 36647058 36647391 -8260179 + AluSx SINE Alu 1 312 0 288 0 0 0 chr21 36647822 36647854 -8259716 + (TG)n Simple_repeat Simple_repeat 2 33 0 1485 174 93 0 chr21 36647855 36648113 -8259457 - AluJo SINE Alu -29 283 2 222 260 26 52 chr21 36648114 36648191 -8259379 - MER5A DNA MER1_type -113 76 2 2533 86 0 0 chr21 36648196 36648509 -8259061 + AluSq SINE Alu 1 313 0 285 135 0 0 chr21 36649840 36649892 -8257678 + (TG)n Simple_repeat Simple_repeat 1 52 0 209 278 0 0 chr21 36651289 36651343 -8256227 - L2 LINE L2 -16 3256 3203 1157 132 0 6 chr21 36651394 36651568 -8256002 - AluSg/x SINE Alu -3 309 137 336 297 71 25 chr21 36651586 36651825 -8255745 - L2 LINE L2 -146 3167 2918 304 280 25 34 chr21 36651912 36652030 -8255540 + MIR SINE MIR 26 142 -66 360 0 0 0 chr21 36652636 36652676 -8254894 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 33 0 0 chr21 36652729 36652759 -8254811 + AT_rich Low_complexity Low_complexity 1 30 0 2140 92 37 0 chr21 36653257 36653530 -8254040 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr21 36653533 36653556 -8254014 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1367 215 57 48 chr21 36653576 36653739 -8253831 + MLT1A2 LTR MaLR 18 178 -196 342 0 0 0 chr21 36653739 36653777 -8253793 + (TC)n Simple_repeat Simple_repeat 2 39 0 1367 215 57 48 chr21 36653777 36653967 -8253603 + MLT1A2 LTR MaLR 178 374 0 2201 115 10 6 chr21 36654653 36654965 -8252605 + AluSp SINE Alu 1 313 0 221 83 28 0 chr21 36654965 36655001 -8252569 + (GA)n Simple_repeat Simple_repeat 2 38 0 2351 84 3 0 chr21 36656200 36656496 -8251074 + AluSp SINE Alu 1 297 -16 594 165 0 0 chr21 36656653 36656744 -8250826 + AluS SINE Alu 2 92 -220 1449 89 0 0 chr21 36656744 36656924 -8250646 - AluSq SINE Alu -131 182 3 185 336 37 30 chr21 36657032 36657166 -8250404 - MIR SINE MIR -112 150 16 1788 174 23 3 chr21 36657457 36657762 -8249808 + AluJb SINE Alu 2 312 0 2432 107 13 19 chr21 36658446 36658820 -8248750 - L1PB1 LINE L1 -3 6148 5777 226 146 0 0 chr21 36658851 36658892 -8248678 - LTR66 LTR ERVL -171 439 399 404 270 7 0 chr21 36658901 36659038 -8248532 + (TA)n Simple_repeat Simple_repeat 2 139 0 227 333 0 0 chr21 36659048 36659138 -8248432 - L1MC4 LINE L1 -1339 6703 6614 * 243 322 0 0 chr21 36659086 36659176 -8248394 + L1MC4 LINE L1 6614 6703 -1339 * 259 273 23 0 chr21 36659168 36659256 -8248314 - L1MC4 LINE L1 -1339 6703 6614 * 268 194 0 82 chr21 36659182 36659280 -8248290 + L1MC4 LINE L1 6614 6703 -1339 3254 112 36 60 chr21 36659306 36660010 -8247560 - L1P5 LINE L1 -361 5790 5104 441 84 0 56 chr21 36660316 36660387 -8247183 - FRAM/FAM SINE Alu -90 86 20 1932 144 3 7 chr21 36661648 36661939 -8245631 - AluJo SINE Alu -16 296 7 495 213 19 9 chr21 36662270 36662378 -8245192 - MIR SINE MIR -140 122 14 277 312 13 0 chr21 36663692 36663769 -8243801 - L2 LINE L2 0 3313 3236 217 301 97 18 chr21 36664206 36664319 -8243251 + MIR SINE MIR 86 207 -55 1580 60 90 51 chr21 36665489 36665723 -8241847 - AluSq SINE Alu -2 311 69 209 235 98 53 chr21 36666002 36666134 -8241436 + MIR SINE MIR 46 183 -79 2214 110 19 7 chr21 36666362 36666670 -8240900 - AluSx SINE Alu 0 312 1 536 186 107 88 chr21 36666756 36666971 -8240599 - MER20 DNA MER1_type 0 219 1 885 280 155 13 chr21 36667163 36667916 -8239654 + L2 LINE L2 2447 3313 0 620 215 62 6 chr21 36668312 36668489 -8239081 - MER5A DNA MER1_type 0 189 3 1835 87 124 14 chr21 36670019 36670294 -8237276 + AluSg1 SINE Alu 1 305 -4 1542 212 105 11 chr21 36670688 36671051 -8236519 + MLT2C1 LTR ERVL 1 397 0 1996 121 40 7 chr21 36671604 36671902 -8235668 + AluSq SINE Alu 1 308 -5 2675 52 0 0 chr21 36672278 36672587 -8234983 - AluY SINE Alu -2 309 1 244 312 120 30 chr21 36673693 36673927 -8233643 + MIR SINE MIR 8 262 0 1172 94 0 12 chr21 36674609 36674769 -8232801 - AluSg/x SINE Alu -1 309 152 243 0 0 0 chr21 36675707 36675734 -8231836 + (A)n Simple_repeat Simple_repeat 1 27 0 223 235 20 0 chr21 36676237 36676288 -8231282 - MIR3 SINE MIR -49 159 108 195 129 0 0 chr21 36678488 36678519 -8229051 + (CCTA)n Simple_repeat Simple_repeat 3 33 0 1650 136 64 20 chr21 36679593 36679888 -8227682 + AluY SINE Alu 4 311 0 500 249 73 6 chr21 36680178 36680343 -8227227 + MER104 DNA MER2_type 4 179 -1 203 220 34 0 chr21 36680597 36680656 -8226914 + GA-rich Low_complexity Low_complexity 2 62 0 409 244 8 19 chr21 36681723 36681982 -8225588 + (CATA)n Simple_repeat Simple_repeat 1 256 0 2181 116 7 3 chr21 36683081 36683391 -8224179 + AluSq SINE Alu 1 311 -2 249 193 88 0 chr21 36683871 36683928 -8223642 + MER5A DNA MER1_type 48 109 -80 288 77 0 0 chr21 36684575 36684614 -8222956 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 39 0 0 0 chr21 36685902 36685941 -8221629 + AT_rich Low_complexity Low_complexity 1 39 0 2220 102 0 7 chr21 36686637 36686932 -8220638 + AluSc SINE Alu 3 295 -14 2390 99 0 0 chr21 36687624 36687927 -8219643 + AluSg SINE Alu 1 303 -7 182 305 74 30 chr21 36688407 36688610 -8218960 + L2 LINE L2 1954 2165 -1149 204 319 17 35 chr21 36689225 36689341 -8218229 - L2 LINE L2 -9 3304 3191 2118 184 13 15 chr21 36690553 36690944 -8216626 - MLT1B LTR MaLR 0 390 1 352 211 14 0 chr21 36690946 36691017 -8216553 + L2 LINE L2 3162 3233 -39 283 224 17 0 chr21 36691062 36691120 -8216450 + Charlie1 DNA MER1_type 1 59 -2702 896 110 52 13 chr21 36691123 36691278 -8216292 + Charlie1 DNA MER1_type 2429 2589 -172 1267 119 0 26 chr21 36691278 36691452 -8216118 - AluSp SINE Alu -6 307 137 2250 109 3 6 chr21 36691452 36691763 -8215807 - AluSx SINE Alu -2 310 1 1267 119 0 26 chr21 36691763 36691781 -8215789 - AluSp SINE Alu -176 137 120 474 200 103 28 chr21 36691781 36691926 -8215644 + Charlie1 DNA MER1_type 2606 2761 0 263 219 114 29 chr21 36692902 36693007 -8214563 + L2 LINE L2 3194 3307 -6 3435 59 2 0 chr21 36694061 36694467 -8213103 - L1PA7 LINE L1 -15 6139 5733 2789 149 23 42 chr21 36694698 36695222 -8212348 + L1MC1 LINE L1 5820 6333 0 23 0 0 0 chr21 36695553 36695576 -8211994 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr21 36695781 36695814 -8211756 + (TG)n Simple_repeat Simple_repeat 1 33 0 195 80 0 60 chr21 36695814 36695864 -8211706 + (TA)n Simple_repeat Simple_repeat 1 47 0 2610 52 7 0 chr21 36698185 36698493 -8209077 + AluY SINE Alu 2 311 0 316 205 64 39 chr21 36699497 36699575 -8207995 + L2 LINE L2 3147 3226 -46 468 238 112 28 chr21 36699592 36699735 -8207835 + MIR SINE MIR 98 252 -10 270 56 0 0 chr21 36699738 36699774 -8207796 + (TTA)n Simple_repeat Simple_repeat 3 38 0 257 232 253 0 chr21 36701576 36701675 -8205895 + L2 LINE L2 3189 3312 -1 198 143 0 0 chr21 36701675 36701710 -8205860 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 180 0 0 0 chr21 36702640 36702660 -8204910 + (A)n Simple_repeat Simple_repeat 1 20 0 213 39 0 0 chr21 36702896 36702922 -8204648 + (TA)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr21 36702942 36702973 -8204597 + AT_rich Low_complexity Low_complexity 1 31 0 515 229 7 0 chr21 36703275 36703419 -8204151 + (TG)n Simple_repeat Simple_repeat 2 146 0 443 267 129 27 chr21 36704377 36704602 -8202968 - MIR SINE MIR -1 261 14 1889 147 33 3 chr21 36706483 36706782 -8200788 - AluJb SINE Alu -2 310 3 1499 249 66 20 chr21 36708860 36709088 -8198482 + MLT1C LTR MaLR 8 224 -243 4134 190 29 4 chr21 36709088 36709803 -8197767 - MER44D DNA MER2_type 0 605 1 1499 249 66 20 chr21 36709803 36710012 -8197558 + MLT1C LTR MaLR 224 465 -2 207 0 0 0 chr21 36710072 36710095 -8197475 + (T)n Simple_repeat Simple_repeat 1 23 0 189 74 0 0 chr21 36710773 36710800 -8196770 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4634 173 43 20 chr21 36711672 36712164 -8195406 + L1MA9 LINE L1 5318 5842 -470 2035 140 3 0 chr21 36712164 36712457 -8195113 - AluSx SINE Alu -18 294 1 4634 173 43 20 chr21 36712457 36712900 -8194670 + L1MA9 LINE L1 5842 6274 -38 2100 95 14 17 chr21 36713047 36713171 -8194399 + AluSc SINE Alu 1 124 -185 189 0 0 0 chr21 36713171 36713192 -8194378 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2100 95 14 17 chr21 36713192 36713361 -8194209 + AluSc SINE Alu 124 293 -16 201 260 0 0 chr21 36713461 36713511 -8194059 - L2 LINE L2 0 3272 3223 961 131 7 7 chr21 36713600 36713745 -8193825 - AluSq/x SINE Alu -167 145 1 6669 132 48 53 chr21 36714164 36714942 -8192628 + Tigger3b DNA MER2_type 1 781 -2247 2376 84 0 0 chr21 36714942 36715238 -8192332 - AluSc SINE Alu -13 296 1 6669 132 48 53 chr21 36715238 36715428 -8192142 + Tigger3b DNA MER2_type 781 970 -2058 2205 102 0 0 chr21 36715428 36715713 -8191857 - AluY SINE Alu -26 285 1 6669 132 48 53 chr21 36715713 36715980 -8191590 + Tigger3b DNA MER2_type 970 1231 0 454 252 17 26 chr21 36716186 36716327 -8191243 - FLAM_A SINE Alu 0 141 2 429 231 16 50 chr21 36716363 36716484 -8191086 - MIR SINE MIR -42 220 104 28 29 0 0 chr21 36716782 36716817 -8190753 + AT_rich Low_complexity Low_complexity 1 35 0 506 299 61 5 chr21 36719824 36720021 -8187549 - MIR SINE MIR -5 257 50 23 0 0 0 chr21 36720681 36720704 -8186866 + AT_rich Low_complexity Low_complexity 1 23 0 417 224 139 48 chr21 36721638 36721803 -8185767 + MIR SINE MIR 82 261 -1 247 222 125 42 chr21 36722002 36722074 -8185496 - L2 LINE L2 -9 3304 3227 699 248 99 75 chr21 36722356 36722860 -8184710 + L1ME4a LINE L1 5374 5889 -232 349 181 21 32 chr21 36723507 36723601 -8183969 - MIR SINE MIR -97 165 73 451 245 9 0 chr21 36725114 36725220 -8182350 + Charlie4 DNA MER1_type 1840 1946 -15 24 0 0 0 chr21 36728116 36728140 -8179430 + AT_rich Low_complexity Low_complexity 1 24 0 380 224 21 15 chr21 36729178 36729374 -8178196 + GA-rich Low_complexity Low_complexity 1 197 0 307 229 26 0 chr21 36729942 36730031 -8177539 - L1MC4 LINE L1 0 8042 7893 180 97 0 0 chr21 36730081 36730112 -8177458 + (TC)n Simple_repeat Simple_repeat 1 31 0 2518 59 7 7 chr21 36730543 36730848 -8176722 - AluY SINE Alu -6 305 1 2378 65 24 0 chr21 36732214 36732506 -8175064 - AluY SINE Alu -12 299 1 23 0 0 0 chr21 36732526 36732549 -8175021 + AT_rich Low_complexity Low_complexity 1 23 0 240 154 0 0 chr21 36733470 36733522 -8174048 + (TG)n Simple_repeat Simple_repeat 1 52 0 303 28 0 0 chr21 36737008 36737044 -8170526 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 693 184 0 0 chr21 36737431 36737599 -8169971 + (CA)n Simple_repeat Simple_repeat 1 168 0 201 147 0 0 chr21 36737902 36737936 -8169634 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 1061 281 142 21 chr21 36738175 36738691 -8168879 + MLT1G1 LTR MaLR 3 580 -15 237 294 47 12 chr21 36738777 36738862 -8168708 - L2 LINE L2 0 3313 3226 370 157 20 157 chr21 36740987 36741134 -8166436 - MER104 DNA Tc2 -1 179 53 1236 170 14 31 chr21 36741221 36741444 -8166126 - MER20 DNA MER1_type 0 219 1 24 0 0 0 chr21 36742302 36742326 -8165244 + AT_rich Low_complexity Low_complexity 1 24 0 2281 93 0 0 chr21 36742332 36742622 -8164948 + AluSc SINE Alu 1 290 -19 2006 255 103 46 chr21 36743239 36744756 -8162814 + L1ME LINE L1 3100 4702 -1444 9527 147 24 23 chr21 36744759 36747709 -8159861 + L1MA4A LINE L1 3324 6273 -30 510 17 0 0 chr21 36747718 36747777 -8159793 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 789 264 85 54 chr21 36747827 36748677 -8158893 + L1ME LINE L1 4725 5609 -553 1364 283 61 4 chr21 36748677 36749168 -8158402 - LTR33 LTR ERVL -2 519 1 789 264 85 54 chr21 36749168 36749279 -8158291 + L1ME LINE L1 5609 5715 -447 321 68 0 0 chr21 36749471 36749515 -8158055 + (CA)n Simple_repeat Simple_repeat 1 44 0 219 359 19 9 chr21 36749747 36749853 -8157717 - L2 LINE L2 -262 3051 2945 531 302 126 59 chr21 36750172 36750593 -8156977 - L2 LINE L2 -781 2533 2085 304 290 20 10 chr21 36750617 36750717 -8156853 - L2 LINE L2 -2047 1267 1167 365 279 89 6 chr21 36750765 36750923 -8156647 - MIR SINE MIR -82 180 10 186 43 0 0 chr21 36754221 36754244 -8153326 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 244 317 168 15 chr21 36754857 36755125 -8152445 + L2 LINE L2 2226 2534 -780 22 0 0 0 chr21 36755433 36755455 -8152115 + AT_rich Low_complexity Low_complexity 1 22 0 483 255 57 0 chr21 36756744 36756885 -8150685 + MER5A DNA MER1_type 1 149 -40 1897 157 84 8 chr21 36757374 36757756 -8149814 - MLT1C LTR MaLR 0 467 57 453 107 173 13 chr21 36757761 36757836 -8149734 + AluSq SINE Alu 123 209 -104 2781 19 0 3 chr21 36757917 36758229 -8149341 - AluYa5 SINE Alu 0 311 1 23 54 0 0 chr21 36758254 36758291 -8149279 + AT_rich Low_complexity Low_complexity 1 37 0 1068 297 85 28 chr21 36758481 36759047 -8148523 - L2 LINE L2 -361 2953 2356 2316 102 0 3 chr21 36759164 36759469 -8148101 + AluSq SINE Alu 1 304 -9 475 166 24 181 chr21 36759477 36759535 -8148035 + L3 LINE CR1 1180 1245 -332 2065 154 0 0 chr21 36759535 36759840 -8147730 - AluSx SINE Alu -6 306 2 475 166 24 181 chr21 36759840 36759986 -8147584 + L3 LINE CR1 1245 1352 -225 2343 145 17 17 chr21 36763998 36764412 -8143158 + L1MB2 LINE L1 5446 5859 -312 1309 70 21 16 chr21 36764429 36764616 -8142954 - L1PA10 LINE L1 -1 6167 5980 1443 167 67 13 chr21 36764616 36764921 -8142649 + L1MB2 LINE L1 5841 6169 -2 21 36 0 0 chr21 36764926 36764954 -8142616 + AT_rich Low_complexity Low_complexity 1 28 0 382 355 143 7 chr21 36765863 36766142 -8141428 + L2 LINE L2 2956 3272 0 4315 180 34 33 chr21 36766431 36767834 -8139736 + L1MB3 LINE L1 4789 6180 -3 258 327 20 30 chr21 36768264 36768365 -8139205 + MIR SINE MIR 52 151 -57 184 263 0 0 chr21 36768485 36768523 -8139047 + MIR SINE MIR 106 143 -65 795 205 63 0 chr21 36768699 36768889 -8138681 + MER33 DNA MER1_type 1 202 -122 2316 98 7 0 chr21 36769375 36769671 -8137899 - AluSx SINE Alu -9 303 6 1003 146 34 0 chr21 36769711 36769889 -8137681 - L1MB5 LINE L1 -8 6166 5983 963 117 7 0 chr21 36771262 36771407 -8136163 + L1PA10 LINE L1 6018 6163 -5 1835 108 91 17 chr21 36771482 36771769 -8135801 - AluSg SINE Alu -2 308 1 418 333 58 25 chr21 36772565 36772805 -8134765 - L3 LINE CR1 -226 1351 1104 229 286 51 22 chr21 36772815 36772993 -8134577 + L1ME4a LINE L1 5931 6113 -8 943 281 177 24 chr21 36773003 36773219 -8134351 - L2 LINE L2 0 3313 3131 2096 136 0 10 chr21 36773219 36773521 -8134049 - AluSx SINE Alu -13 299 1 943 281 177 24 chr21 36773521 36774043 -8133527 - L2 LINE L2 -182 3131 2455 197 400 18 9 chr21 36774013 36774123 -8133447 - L3 LINE CR1 -478 1099 989 * 2221 83 0 54 chr21 36777932 36778245 -8129325 - AluY SINE Alu -15 296 1 2283 66 0 11 chr21 36778310 36778633 -8128937 + AluY SINE Alu 1 320 0 328 194 122 31 chr21 36778638 36778736 -8128834 + MER5B DNA MER1_type 60 166 -12 1559 213 17 14 chr21 36779845 36780197 -8127373 + MLT1A1 LTR MaLR 13 365 0 3883 223 19 14 chr21 36780535 36781617 -8125953 - L1PA15 LINE L1 -2705 3441 2355 8360 206 22 11 chr21 36781617 36784326 -8123244 + L1PA15 LINE L1 3442 6165 0 346 279 72 0 chr21 36784329 36784440 -8123130 + L1MC1 LINE L1 4951 5069 -1077 2283 105 0 0 chr21 36784526 36784820 -8122750 + AluSx SINE Alu 1 294 -18 22 70 0 0 chr21 36784898 36784941 -8122629 + AT_rich Low_complexity Low_complexity 1 43 0 243 364 9 18 chr21 36785042 36785152 -8122418 - L2 LINE L2 -1 3312 3204 473 302 72 16 chr21 36785207 36785525 -8122045 + L1MC1 LINE L1 5402 5737 -384 774 212 153 62 chr21 36786019 36786392 -8121178 + MLT1J2 LTR MaLR 40 446 -4 207 0 0 0 chr21 36788865 36788888 -8118682 + (T)n Simple_repeat Simple_repeat 1 23 0 2246 95 3 7 chr21 36789168 36789464 -8118106 - AluSq SINE Alu -18 295 1 394 269 28 49 chr21 36789837 36790139 -8117431 + LTR16B LTR ERVL 97 464 0 21 0 0 0 chr21 36790206 36790227 -8117343 + AT_rich Low_complexity Low_complexity 1 21 0 522 266 101 0 chr21 36791709 36791878 -8115692 + MER112 DNA MER1_type 66 251 -9 400 250 173 19 chr21 36791891 36792047 -8115523 + MER5A DNA MER1_type 4 183 -6 2468 173 8 44 chr21 36792429 36792956 -8114614 + L1MC1 LINE L1 5817 6324 -9 1992 181 5 55 chr21 36792537 36792958 -8114612 + L1MC1 LINE L1 5927 6326 -7 1803 264 137 43 chr21 36794019 36795361 -8112209 + L2 LINE L2 1780 3249 -64 290 304 65 0 chr21 36796299 36796391 -8111179 + MER5A DNA MER1_type 57 154 -35 21 36 0 0 chr21 36797727 36797755 -8109815 + AT_rich Low_complexity Low_complexity 1 28 0 487 193 24 36 chr21 36797808 36797945 -8109625 - MIR SINE MIR -25 237 104 213 289 48 10 chr21 36798607 36798711 -8108859 + L2 LINE L2 3164 3271 -1 475 204 76 34 chr21 36799286 36799515 -8108055 - L1ME3 LINE L1 -211 5951 5710 365 259 26 26 chr21 36799535 36799651 -8107919 - L1ME3 LINE L1 -519 5651 5536 428 296 142 0 chr21 36800060 36800229 -8107341 - MIR SINE MIR -56 206 14 2028 143 3 0 chr21 36800727 36801021 -8106549 + AluJb SINE Alu 17 311 -1 2372 70 6 38 chr21 36801556 36801871 -8105699 + AluY SINE Alu 1 305 -6 3473 194 23 79 chr21 36802338 36803364 -8104206 + LTR5 LTR ERVK 1 969 0 1511 164 29 11 chr21 36804770 36805044 -8102526 - MER58B DNA MER1_type -6 335 57 460 317 62 31 chr21 36805684 36805908 -8101662 - MIR SINE MIR -4 258 28 241 260 119 40 chr21 36806100 36806277 -8101293 + LTR33 LTR ERVL 23 213 -308 408 264 115 29 chr21 36807346 36807769 -8099801 + MLT1H1 LTR MaLR 83 590 0 1067 287 107 19 chr21 36807840 36808317 -8099253 + MLT1H LTR MaLR 15 533 -16 2497 61 0 0 chr21 36809307 36809601 -8097969 - AluY SINE Alu -17 294 1 1103 68 8 0 chr21 36809601 36809734 -8097836 - AluY SINE Alu -177 134 1 304 345 113 0 chr21 36810387 36810529 -8097041 - MER115 DNA AcHobo -253 440 283 207 295 70 16 chr21 36810723 36810852 -8096718 + MIR SINE MIR 19 154 -108 2455 225 69 51 chr21 36810873 36811243 -8096327 + MER21B LTR ERV1 21 383 -480 2576 59 0 0 chr21 36811243 36811548 -8096022 + AluY SINE Alu 1 305 -6 2455 225 69 51 chr21 36811548 36811900 -8095670 + MER21B LTR ERV1 383 756 -107 181 295 38 57 chr21 36812069 36812174 -8095396 + MIR SINE MIR 159 261 -1 1284 92 0 0 chr21 36812234 36812397 -8095173 - AluSg/x SINE Alu -18 294 132 400 261 108 6 chr21 36812747 36812904 -8094666 + MER96 DNA MER1_type 3 175 0 1411 232 28 56 chr21 36813051 36813443 -8094127 + MLT1B LTR MaLR 2 382 -8 240 35 0 0 chr21 36815011 36815040 -8092530 + (T)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr21 36815571 36815598 -8091972 + AT_rich Low_complexity Low_complexity 1 27 0 1470 114 54 60 chr21 36815598 36815658 -8091912 - L1MA8 LINE L1 -3 6288 6229 537 16 0 0 chr21 36815658 36815720 -8091850 + (TA)n Simple_repeat Simple_repeat 2 63 0 1470 114 54 60 chr21 36815720 36815957 -8091613 - L1MA8 LINE L1 -62 6229 5993 1350 92 57 53 chr21 36815957 36816184 -8091386 + L1MA8 LINE L1 5393 5620 -671 1868 142 25 33 chr21 36816218 36816577 -8090993 + L1MA8 LINE L1 5598 5953 -338 250 205 64 13 chr21 36816575 36816653 -8090917 + L1ME4a LINE L1 6040 6121 0 * 2479 41 21 0 chr21 36816842 36817133 -8090437 - AluY SINE Alu -14 297 1 209 253 60 12 chr21 36818070 36818153 -8089417 + MIR SINE MIR 106 192 -70 1394 191 9 48 chr21 36818196 36818511 -8089059 - AluJo SINE Alu -8 304 2 505 292 135 61 chr21 36818991 36819398 -8088172 + MLT1L LTR MaLR 170 606 -9 893 153 6 0 chr21 36820028 36820204 -8087366 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 188 340 208 0 chr21 36820208 36820314 -8087256 - L2 LINE L2 -23 3249 3122 187 200 0 0 chr21 36820369 36820409 -8087161 + MER5B DNA MER1_type 15 54 -124 1755 115 98 28 chr21 36820922 36821208 -8086362 + AluSg SINE Alu 5 310 0 313 310 62 0 chr21 36821241 36821354 -8086216 - L2 LINE L2 -5 3267 3148 681 227 39 53 chr21 36821577 36821784 -8085786 + MER63A DNA MER1_type 2 205 -5 324 0 0 0 chr21 36822053 36822089 -8085481 + (TG)n Simple_repeat Simple_repeat 1 36 0 417 187 27 2 chr21 36826596 36826684 -8080886 + MLT2C2 LTR ERVL 271 411 -38 369 320 0 6 chr21 36826701 36826882 -8080688 + (TA)n Simple_repeat Simple_repeat 1 180 0 294 29 0 0 chr21 36826954 36826989 -8080581 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 180 80 0 chr21 36827013 36827063 -8080507 + MLT2C1 LTR ERVL 343 396 -1 * 689 269 27 5 chr21 36827063 36827245 -8080325 - LTR16A LTR ERVL -249 201 16 25 65 0 0 chr21 36827316 36827362 -8080208 + AT_rich Low_complexity Low_complexity 1 46 0 237 119 119 0 chr21 36827372 36827414 -8080156 + MLT2C2 LTR ERVL 97 143 -321 197 281 78 0 chr21 36827885 36827949 -8079621 + MIR SINE MIR 86 154 -108 22 56 0 0 chr21 36831269 36831305 -8076265 + AT_rich Low_complexity Low_complexity 1 36 0 760 137 0 0 chr21 36831355 36831472 -8076098 - AluSg/x SINE Alu -4 308 192 2115 116 0 3 chr21 36831644 36831959 -8075611 + AluY SINE Alu 1 314 0 1379 73 0 6 chr21 36832820 36832984 -8074586 + AluSc SINE Alu 1 163 -146 2461 43 7 20 chr21 36833448 36833751 -8073819 + AluY SINE Alu 1 299 -12 669 127 54 6 chr21 36835304 36835620 -8071950 + (TAGA)n Simple_repeat Simple_repeat 1 331 0 508 135 54 0 chr21 36835666 36835814 -8071756 + (TAGA)n Simple_repeat Simple_repeat 3 158 0 383 276 50 107 chr21 36835843 36836227 -8071343 + L1MEd LINE L1 586 947 -5172 650 309 49 29 chr21 36836321 36836832 -8070738 + HAL1 LINE L1 1249 1769 -738 2224 68 20 24 chr21 36836838 36837130 -8070440 + AluY SINE Alu 1 291 -20 593 265 22 79 chr21 36837591 36837998 -8069572 + L1MEd LINE L1 2136 2519 -3610 313 180 0 207 chr21 36838369 36838519 -8069051 - L1MA9 LINE L1 -35 6277 6159 294 312 59 0 chr21 36838719 36838905 -8068665 + L1MEd LINE L1 2589 2785 -3344 216 0 0 0 chr21 36840008 36840032 -8067538 + (TG)n Simple_repeat Simple_repeat 2 25 0 796 268 139 20 chr21 36840534 36841329 -8066241 + L2 LINE L2 2426 3309 -4 2404 86 7 0 chr21 36842140 36842442 -8065128 - AluY SINE Alu -7 304 1 212 330 44 0 chr21 36843456 36843547 -8064023 - MIR3 SINE MIR 0 208 114 344 254 78 14 chr21 36843758 36843900 -8063670 + MLT1J LTR MaLR 27 177 -334 244 221 83 55 chr21 36844015 36844160 -8063410 + MLT1J LTR MaLR 254 402 -109 839 250 30 25 chr21 36845185 36845385 -8062185 + MER63A DNA MER1_type 1 201 -9 1994 119 50 61 chr21 36845419 36845798 -8061772 + THE1C LTR MaLR 1 375 0 366 80 0 0 chr21 36846086 36846136 -8061434 + (GACTG)n Simple_repeat Simple_repeat 3 52 0 447 224 120 22 chr21 36848250 36848433 -8059137 + MIR SINE MIR 49 249 -13 200 167 0 19 chr21 36848808 36848862 -8058708 + CT-rich Low_complexity Low_complexity 2 54 0 205 246 33 0 chr21 36849678 36849739 -8057831 + (GTTTG)n Simple_repeat Simple_repeat 3 65 0 411 291 53 0 chr21 36850505 36850656 -8056914 - L2 LINE L2 -982 2332 2174 601 266 44 86 chr21 36850798 36851149 -8056421 + MLT1I LTR MaLR 91 409 0 490 123 50 29 chr21 36851844 36852191 -8055379 + (CA)n Simple_repeat Simple_repeat 1 354 0 313 122 65 9 chr21 36852208 36852315 -8055255 + (CA)n Simple_repeat Simple_repeat 1 113 0 493 79 49 49 chr21 36852408 36852572 -8054998 + (CA)n Simple_repeat Simple_repeat 1 164 0 250 138 25 38 chr21 36852584 36852664 -8054906 + (CA)n Simple_repeat Simple_repeat 1 79 0 458 101 57 25 chr21 36852691 36852849 -8054721 + (CA)n Simple_repeat Simple_repeat 2 164 0 1657 52 0 14 chr21 36853744 36853955 -8053615 + L1PA8 LINE L1 5965 6172 0 659 319 46 0 chr21 36854075 36854291 -8053279 + MIR SINE MIR 6 231 -31 321 331 66 30 chr21 36854297 36854463 -8053107 + L2 LINE L2 3101 3272 0 29 0 0 0 chr21 36854468 36854497 -8053073 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 36854748 36854771 -8052799 + AT_rich Low_complexity Low_complexity 1 23 0 488 124 22 11 chr21 36854830 36854919 -8052651 - L1PA8 LINE L1 0 6172 6083 2273 102 3 0 chr21 36855397 36855692 -8051878 - AluSx SINE Alu -5 307 12 390 226 78 0 chr21 36855792 36855907 -8051663 + MER5C DNA MER1_type 1 124 -200 28 0 0 0 chr21 36856144 36856172 -8051398 + AT_rich Low_complexity Low_complexity 1 28 0 1780 180 0 25 chr21 36857415 36857731 -8049839 - AluJb SINE Alu -4 308 1 3833 185 30 12 chr21 36858931 36859769 -8047801 + L1MB4 LINE L1 5298 6177 -3 1143 230 106 55 chr21 36859828 36860176 -8047394 - MLT1J LTR MaLR -141 370 5 495 290 31 19 chr21 36861557 36861719 -8045851 + MIR SINE MIR 4 167 -95 4102 165 32 25 chr21 36861724 36861906 -8045664 + L1MB2 LINE L1 5366 5545 -626 2686 85 19 22 chr21 36861906 36862271 -8045299 + THE1B LTR MaLR 1 364 0 4102 165 32 25 chr21 36862271 36862888 -8044682 + L1MB2 LINE L1 5545 6171 0 243 286 31 20 chr21 36862907 36863005 -8044565 + MIR SINE MIR 162 260 -2 244 350 213 0 chr21 36863320 36863654 -8043916 + L3 LINE CR1 861 1265 -312 365 330 45 22 chr21 36863813 36864037 -8043533 + L3 LINE CR1 1347 1575 -2 1936 162 40 3 chr21 36864355 36864701 -8042869 + L1MC2 LINE L1 5716 6074 -270 746 162 10 0 chr21 36864768 36864908 -8042662 + L1MC1 LINE L1 6059 6202 -131 2575 105 11 5 chr21 36865424 36865797 -8041773 + THE1C LTR MaLR 1 375 0 342 195 26 0 chr21 36866947 36867024 -8040546 + MIR SINE MIR 75 153 -109 22 56 0 0 chr21 36867088 36867124 -8040446 + AT_rich Low_complexity Low_complexity 1 36 0 216 216 0 0 chr21 36867295 36867346 -8040224 + (TG)n Simple_repeat Simple_repeat 2 52 0 470 286 49 0 chr21 36867621 36867806 -8039764 + MIR SINE MIR 46 239 -23 1449 239 164 91 chr21 36867996 36869887 -8037683 + HAL1 LINE L1 94 2312 -195 2191 133 36 25 chr21 36869887 36870247 -8037323 + THE1B LTR MaLR 1 364 0 1449 239 164 91 chr21 36870247 36870430 -8037140 + HAL1 LINE L1 2312 2480 -27 2108 160 11 11 chr21 36870611 36870961 -8036609 + MLT1A1 LTR MaLR 16 365 0 298 247 47 0 chr21 36871226 36871311 -8036259 + L1MC4a LINE L1 5562 5650 -471 406 250 0 0 chr21 36871351 36871447 -8036123 - MER5B DNA MER1_type -32 146 51 308 227 32 142 chr21 36871470 36871717 -8035853 + L1MC4a LINE L1 5710 5929 -1879 1697 174 3 11 chr21 36874366 36874653 -8032917 + AluJo SINE Alu 11 295 -17 2009 149 0 13 chr21 36875478 36875794 -8031776 + AluSx SINE Alu 1 312 0 520 182 18 129 chr21 36876896 36877066 -8030504 + MER106B DNA MER1_type 896 1046 -13 2073 124 3 10 chr21 36879836 36880142 -8027428 + AluSx SINE Alu 1 304 -8 1371 218 32 6 chr21 36880862 36881178 -8026392 + MER33 DNA MER1_type 1 324 0 283 326 37 0 chr21 36881305 36881440 -8026130 + MIR SINE MIR 44 183 -79 1972 123 22 0 chr21 36883677 36883977 -8023593 + AluSx SINE Alu 1 306 0 326 338 7 0 chr21 36890265 36890419 -8017151 + (CG)n Simple_repeat Simple_repeat 1 155 0 407 77 0 15 chr21 36890472 36890537 -8017033 + (GGA)n Simple_repeat Simple_repeat 1 64 0 239 176 14 81 chr21 36890604 36890678 -8016892 + G-rich Low_complexity Low_complexity 3 71 0 198 103 0 0 chr21 36892828 36892857 -8014713 + (GA)n Simple_repeat Simple_repeat 2 30 0 2673 62 50 0 chr21 36894882 36895220 -8012350 + THE1A LTR MaLR 1 355 0 234 274 20 48 chr21 36895400 36895500 -8012070 + MIR3 SINE MIR 71 169 -39 270 294 0 90 chr21 36895758 36895935 -8011635 + MER5B DNA MER1_type 6 166 -12 1261 178 58 68 chr21 36896037 36896167 -8011403 + AluJo SINE Alu 1 131 -181 2842 7 3 0 chr21 36896167 36896470 -8011100 + AluY SINE Alu 1 304 -7 1261 178 58 68 chr21 36896470 36896632 -8010938 + AluJo SINE Alu 131 290 -22 856 234 145 3 chr21 36898391 36898637 -8008933 + MER5C DNA MER1_type 3 295 -29 207 0 0 0 chr21 36898637 36898660 -8008910 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 856 234 145 3 chr21 36898660 36898695 -8008875 + MER5C DNA MER1_type 295 324 0 733 302 83 42 chr21 36899352 36899736 -8007834 + LTR16C LTR ERVL 92 491 0 220 336 173 0 chr21 36900510 36900620 -8006950 + L2 LINE L2 3136 3264 -8 213 246 15 0 chr21 36900728 36900793 -8006777 + (TA)n Simple_repeat Simple_repeat 1 66 0 231 385 108 0 chr21 36902352 36902482 -8005088 - L2 LINE L2 0 3272 3129 2074 117 4 0 chr21 36903249 36903579 -8003991 - AluY SINE Alu 0 331 1 207 0 0 0 chr21 36904839 36904862 -8002708 + (A)n Simple_repeat Simple_repeat 1 23 0 261 279 66 41 chr21 36906505 36906627 -8000943 + L1ME2 LINE L1 6037 6161 -3 453 305 7 7 chr21 36906725 36906876 -8000694 - MIR SINE MIR -3 259 109 2288 73 6 19 chr21 36907005 36907320 -8000250 + AluY SINE Alu 1 311 0 225 266 71 44 chr21 36907439 36907552 -8000018 - L3b LINE CR1 -366 1217 1102 419 271 62 8 chr21 36908040 36908169 -7999401 + MIR SINE MIR 79 214 -48 734 44 0 75 chr21 36908298 36908457 -7999113 + (GGGGA)n Simple_repeat Simple_repeat 5 151 0 2135 113 5 109 chr21 36909831 36910254 -7997316 - MLT1B LTR MaLR -11 379 1 1264 179 23 23 chr21 36910645 36910664 -7996906 - MER58B DNA MER1_type -2079 341 323 2464 129 83 5 chr21 36910664 36911059 -7996511 + MSTA LTR MaLR 1 426 -2 1264 179 23 23 chr21 36911059 36911301 -7996269 - MER58B DNA MER1_type -2096 324 80 353 248 60 8 chr21 36911307 36911424 -7996146 - MER58B DNA MER1_type -218 123 1 1915 153 46 22 chr21 36912213 36912579 -7994991 + THE1C LTR MaLR 1 375 0 180 77 0 0 chr21 36913943 36913969 -7993601 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1050 232 48 73 chr21 36914209 36914486 -7993084 - MLT1A2 LTR MaLR 0 374 106 2207 106 0 0 chr21 36914486 36914803 -7992767 + AluSx SINE Alu 1 317 0 1050 232 48 73 chr21 36914803 36914895 -7992675 - MLT1A2 LTR MaLR -268 106 13 742 202 0 0 chr21 36915291 36915415 -7992155 - FLAM_A SINE Alu -9 124 1 1657 171 31 17 chr21 36915692 36915979 -7991591 + AluJo SINE Alu 1 291 -21 22 0 0 0 chr21 36916430 36916452 -7991118 + AT_rich Low_complexity Low_complexity 1 22 0 2822 86 6 0 chr21 36916936 36917298 -7990272 - THE1B LTR MaLR 0 364 1 352 306 36 0 chr21 36917812 36917923 -7989647 + L2 LINE L2 3199 3313 0 453 154 26 0 chr21 36917943 36918021 -7989549 + MER116 DNA Mariner 1 80 0 712 131 8 8 chr21 36919474 36919604 -7987966 + (TTCC)n Simple_repeat Simple_repeat 2 131 0 257 220 0 0 chr21 36919604 36919654 -7987916 + CT-rich Low_complexity Low_complexity 1 50 0 2362 240 22 37 chr21 36919880 36920006 -7987564 - L1ME3A LINE L1 0 6170 6044 1095 208 11 23 chr21 36920006 36920266 -7987304 + L1PA16 LINE L1 5910 6166 0 2362 240 22 37 chr21 36920266 36920592 -7986978 - L1ME3A LINE L1 -126 6044 5728 2477 25 0 0 chr21 36920592 36920878 -7986692 + L1PA4 LINE L1 5867 6152 -3 2362 240 22 37 chr21 36920878 36921071 -7986499 - L1ME3A LINE L1 -442 5728 5534 977 114 15 0 chr21 36921784 36921915 -7985655 + AluSq/x SINE Alu 1 133 -179 2398 85 20 0 chr21 36922031 36922336 -7985234 + AluY SINE Alu 1 311 0 971 198 121 12 chr21 36922578 36922826 -7984744 + LTR16A1 LTR ERVL 181 455 -2 931 291 103 22 chr21 36922827 36923243 -7984327 + L2 LINE L2 2325 2774 -540 222 219 0 0 chr21 36924777 36924818 -7982752 + (TG)n Simple_repeat Simple_repeat 1 41 0 2551 111 28 14 chr21 36926609 36926968 -7980602 - THE1B LTR MaLR 0 364 1 212 326 34 0 chr21 36927075 36927164 -7980406 + MIR SINE MIR 8 99 -163 856 215 5 16 chr21 36929339 36929525 -7978045 - MLT2F LTR ERVL 0 663 480 203 162 0 0 chr21 36929943 36929980 -7977590 - MIR SINE MIR -110 152 116 1299 221 21 68 chr21 36930298 36930679 -7976891 - MLT1A1 LTR MaLR -2 363 1 180 111 0 0 chr21 36931156 36931183 -7976387 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2423 69 0 31 chr21 36932480 36932797 -7974773 - AluY SINE Alu -4 307 1 2169 123 7 0 chr21 36932894 36933195 -7974375 + AluSx SINE Alu 1 303 -9 202 200 0 0 chr21 36933870 36933910 -7973660 + CT-rich Low_complexity Low_complexity 5 44 0 564 302 18 22 chr21 36934366 36934591 -7972979 - L1ME LINE L1 -433 5688 5465 458 281 198 16 chr21 36934673 36935018 -7972552 - MLT1J LTR MaLR 0 615 110 21 0 0 0 chr21 36935717 36935738 -7971832 + AT_rich Low_complexity Low_complexity 1 21 0 522 293 20 40 chr21 36935761 36936014 -7971556 + MIR SINE MIR 15 262 0 252 0 0 0 chr21 36936790 36936818 -7970752 + (TA)n Simple_repeat Simple_repeat 2 29 0 2197 128 3 0 chr21 36937153 36937457 -7970113 + AluSx SINE Alu 1 305 -7 862 291 64 48 chr21 36937519 36938098 -7969472 + L1ME4a LINE L1 5272 5858 -263 2058 146 16 30 chr21 36938566 36938746 -7968824 - MLT1A1 LTR MaLR 0 365 184 2216 158 14 68 chr21 36938746 36939066 -7968504 + LOR1b LTR ERV1 1 288 -173 2406 65 0 44 chr21 36939066 36939387 -7968183 + AluY SINE Alu 1 307 -4 2216 158 14 68 chr21 36939387 36939553 -7968017 + LOR1b LTR ERV1 288 461 0 2058 146 16 30 chr21 36939553 36939742 -7967828 - MLT1A1 LTR MaLR -181 184 1 299 326 0 0 chr21 36939760 36939849 -7967721 + GA-rich Low_complexity Low_complexity 3 91 0 2148 99 3 3 chr21 36940079 36940394 -7967176 - AluSq SINE Alu 0 315 1 323 222 59 33 chr21 36940584 36940737 -7966833 + L1ME4a LINE L1 5964 6120 -1 659 221 8 0 chr21 36941393 36941520 -7966050 + MER58B DNA MER1_type 214 341 0 263 135 77 19 chr21 36941650 36941702 -7965868 - MLT1L LTR MaLR -4 611 557 180 77 0 0 chr21 36942559 36942585 -7964985 + (G)n Simple_repeat Simple_repeat 1 26 0 211 348 22 11 chr21 36943187 36943279 -7964291 - MIR3 SINE MIR -7 201 109 203 86 0 29 chr21 36943794 36943829 -7963741 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 1933 227 66 16 chr21 36944809 36945250 -7962320 + MLT1F LTR MaLR 26 488 -54 219 336 17 42 chr21 36945469 36945588 -7961982 - MIR SINE MIR -73 135 20 270 273 55 36 chr21 36946029 36946139 -7961431 + MIR3 SINE MIR 85 196 -12 707 305 139 45 chr21 36946219 36946622 -7960948 + MLT1K LTR MaLR 1 441 -147 1401 240 66 34 chr21 36946674 36946816 -7960754 - LTR16C LTR ERVL 0 491 355 1758 200 93 32 chr21 36946816 36947290 -7960280 + MLT1D LTR MaLR 1 503 -2 1401 240 66 34 chr21 36947290 36947555 -7960015 - LTR16C LTR ERVL -136 355 71 2474 61 0 7 chr21 36947561 36947858 -7959712 + AluY SINE Alu 1 295 -16 1373 207 32 81 chr21 36948898 36948965 -7958605 - MLT1C LTR MaLR 0 467 398 2290 123 0 0 chr21 36948965 36949275 -7958295 + AluSg SINE Alu 1 310 0 1373 207 32 81 chr21 36949275 36949290 -7958280 - MLT1C LTR MaLR -69 398 384 1683 136 140 0 chr21 36949290 36949562 -7958008 + AluSx SINE Alu 1 310 -2 1373 207 32 81 chr21 36949562 36949888 -7957682 - MLT1C LTR MaLR -83 384 78 312 246 0 0 chr21 36950042 36950107 -7957463 + LTR33 LTR ERVL 99 163 -358 233 217 58 14 chr21 36950115 36950184 -7957386 + MER116 DNA Mariner 1 72 -8 1561 189 10 26 chr21 36950498 36950805 -7956765 - MER61B LTR ERV1 0 425 124 1230 134 0 0 chr21 36951635 36951806 -7955764 - AluSp SINE Alu -13 300 130 808 55 128 0 chr21 36951809 36951918 -7955652 + AluSp SINE Alu 17 139 -174 492 188 9 54 chr21 36952171 36952283 -7955287 - MLT2E LTR ERVL -20 608 502 518 307 147 25 chr21 36952323 36952642 -7954928 - MLT2E LTR ERVL -208 420 63 833 260 112 71 chr21 36952756 36953194 -7954376 + MLT1H LTR MaLR 81 536 -13 296 206 15 15 chr21 36953218 36953286 -7954284 + MLT1H-int LTR MaLR 1 68 -1667 1792 170 108 49 chr21 36953993 36954019 -7953551 - MLT2D LTR ERVL -11 453 430 567 112 0 0 chr21 36954019 36954108 -7953462 + (TAGA)n Simple_repeat Simple_repeat 3 91 0 1792 170 108 49 chr21 36954108 36954208 -7953362 - MLT2D LTR ERVL -34 430 337 511 51 25 0 chr21 36954208 36954287 -7953283 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1792 170 108 49 chr21 36954287 36954636 -7952934 - MLT2D LTR ERVL -127 337 1 391 310 96 27 chr21 36955217 36955230 -7952340 + MLT1H LTR MaLR 80 91 -458 189 0 0 0 chr21 36955230 36955251 -7952319 + (CA)n Simple_repeat Simple_repeat 2 22 0 391 310 96 27 chr21 36955251 36955424 -7952146 + MLT1H LTR MaLR 91 279 -270 319 269 113 69 chr21 36955465 36955625 -7951945 + MLT1H LTR MaLR 346 512 -37 1977 184 40 3 chr21 36955632 36956006 -7951564 - MSTB1 LTR MaLR -4 428 41 230 81 27 0 chr21 36956006 36956043 -7951527 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 294 203 0 0 chr21 36956043 36956102 -7951468 - MSTB1 LTR MaLR -333 99 41 846 136 11 33 chr21 36956127 36956311 -7951259 + CT-rich Low_complexity Low_complexity 1 180 0 656 219 67 0 chr21 36956311 36956475 -7951095 - FRAM SINE Alu -3 173 1 374 115 0 0 chr21 36956476 36956528 -7951042 - MSTB1 LTR MaLR -380 52 1 1264 264 54 39 chr21 36956748 36957268 -7950302 + L2 LINE L2 2357 2884 -430 1212 253 103 8 chr21 36957343 36957722 -7949848 + LTR16C LTR ERVL 73 487 -4 1034 239 144 26 chr21 36957724 36957919 -7949651 + L2 LINE L2 2884 3055 -258 216 0 0 0 chr21 36957919 36957943 -7949627 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1781 116 52 8 chr21 36957946 36958214 -7949356 - AluSc SINE Alu -29 280 1 1034 239 144 26 chr21 36958214 36958395 -7949175 + L2 LINE L2 3056 3309 -4 394 259 9 0 chr21 36958399 36958511 -7949059 + L2 LINE L2 2461 2573 -741 542 228 85 85 chr21 36958592 36958803 -7948767 - MIR SINE MIR -39 223 13 296 200 14 0 chr21 36958903 36958973 -7948597 - L1ME4a LINE L1 0 6121 6051 498 303 90 26 chr21 36958992 36959457 -7948113 - L1ME4a LINE L1 -118 6003 5509 29 60 0 0 chr21 36960285 36960335 -7947235 + AT_rich Low_complexity Low_complexity 1 50 0 1547 192 38 38 chr21 36960343 36960708 -7946862 - MLT1A1 LTR MaLR 0 365 1 2361 85 0 13 chr21 36960795 36961100 -7946470 - AluSp SINE Alu -12 301 1 206 311 57 28 chr21 36961425 36961531 -7946039 - MIR3 SINE MIR -87 121 13 222 37 0 0 chr21 36961594 36961621 -7945949 + (T)n Simple_repeat Simple_repeat 1 27 0 279 167 0 19 chr21 36962288 36962342 -7945228 - Charlie7 DNA MER1_type -2503 109 57 1609 190 30 10 chr21 36962717 36963012 -7944558 - AluJo SINE Alu -11 301 1 2366 61 0 0 chr21 36963023 36963347 -7944223 - AluSg SINE Alu 0 324 1 611 76 11 22 chr21 36964539 36964631 -7942939 + MER4A LTR ERV1 1 91 -573 * 1740 152 6 39 chr21 36964628 36964709 -7942861 + MER4A LTR ERV1 266 348 -316 2220 104 7 0 chr21 36964709 36965006 -7942564 - AluSq SINE Alu -11 302 4 1740 152 6 39 chr21 36965006 36965276 -7942294 + MER4A LTR ERV1 348 664 0 605 283 47 14 chr21 36966266 36966478 -7941092 + MIR SINE MIR 1 219 -43 320 297 124 58 chr21 36966741 36966818 -7940752 + L1ME4a LINE L1 5730 5800 -321 2191 136 0 0 chr21 36966818 36967126 -7940444 + AluSx SINE Alu 5 312 0 320 297 124 58 chr21 36967126 36967378 -7940192 + L1ME4a LINE L1 5800 6081 -40 229 245 0 0 chr21 36967381 36967434 -7940136 - MIR SINE MIR -9 253 201 992 215 40 100 chr21 36967434 36967755 -7939815 - MLT1A1 LTR MaLR 0 365 64 1971 130 57 39 chr21 36967755 36968165 -7939405 + THE1B LTR MaLR 1 364 0 298 157 39 0 chr21 36968176 36968227 -7939343 - MLT1A1 LTR MaLR -375 53 1 446 337 31 0 chr21 36968227 36968423 -7939147 - MIR SINE MIR -59 203 2 32 0 0 0 chr21 36968961 36968993 -7938577 + AT_rich Low_complexity Low_complexity 1 32 0 224 236 0 18 chr21 36969121 36969176 -7938394 - L2 LINE L2 -5 3308 3255 702 149 10 0 chr21 36969938 36970243 -7937327 + (TA)n Simple_repeat Simple_repeat 1 308 0 300 200 0 0 chr21 36970274 36970339 -7937231 + CT-rich Low_complexity Low_complexity 2 66 0 241 271 29 0 chr21 36971871 36971941 -7935629 + MER103 DNA DNA 17 88 -78 1059 105 0 0 chr21 36972449 36972774 -7934796 + (TC)n Simple_repeat Simple_repeat 1 325 0 279 154 0 0 chr21 36972775 36972840 -7934730 + CT-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr21 36972875 36972896 -7934674 + AT_rich Low_complexity Low_complexity 1 21 0 2209 115 0 0 chr21 36973008 36973304 -7934266 - AluSg SINE Alu -14 296 1 2624 55 0 10 chr21 36974002 36974312 -7933258 - AluY SINE Alu -4 307 1 2054 130 7 13 chr21 36974987 36975294 -7932276 + AluSx SINE Alu 1 305 -7 339 303 173 14 chr21 36975388 36975596 -7931974 + MIR SINE MIR 3 243 -19 1984 164 3 3 chr21 36975623 36975933 -7931637 + AluJb SINE Alu 1 310 -2 521 281 15 50 chr21 36975952 36976101 -7931469 - MIR SINE MIR -21 241 99 2015 139 49 30 chr21 36976101 36976469 -7931101 + THE1C LTR MaLR 1 375 0 521 281 15 50 chr21 36976469 36976518 -7931052 - MIR SINE MIR -163 99 50 1485 204 34 39 chr21 36976723 36976800 -7930770 + Tigger6 DNA MER2_type 1199 1275 -322 2518 134 46 12 chr21 36976800 36977210 -7930360 - MSTA LTR MaLR -4 424 1 1485 204 34 39 chr21 36977210 36977519 -7930051 + Tigger6 DNA MER2_type 1275 1583 -14 2325 110 7 0 chr21 36977803 36978113 -7929457 - AluSx SINE Alu 0 312 1 402 263 79 26 chr21 36978199 36978351 -7929219 - MIR SINE MIR -78 184 25 2338 108 0 3 chr21 36978694 36979008 -7928562 - AluSq SINE Alu 0 313 1 196 362 21 11 chr21 36979319 36979413 -7928157 + MIR SINE MIR 29 123 -139 2405 144 35 5 chr21 36979468 36979892 -7927678 - LTR56 LTR ERV1 0 445 9 1507 181 14 35 chr21 36979983 36980292 -7927278 + AluJo SINE Alu 9 311 0 359 202 117 0 chr21 36980299 36980393 -7927177 - L2 LINE L2 -27 3286 3182 1552 141 170 67 chr21 36980508 36980665 -7926905 + MSTA LTR MaLR 8 147 -281 2273 83 10 0 chr21 36980665 36980955 -7926615 + AluSc SINE Alu 1 293 -16 1552 141 170 67 chr21 36980955 36981173 -7926397 + MSTA LTR MaLR 147 422 -6 430 247 17 4 chr21 36981175 36981328 -7926242 - L2 LINE L2 -257 3015 2859 371 230 20 0 chr21 36981331 36981431 -7926139 - MLT1B LTR MaLR 0 390 289 192 40 0 0 chr21 36982934 36982959 -7924611 + (TC)n Simple_repeat Simple_repeat 2 26 0 1548 170 24 21 chr21 36983688 36983976 -7923594 + AluJo SINE Alu 2 290 -22 234 200 0 0 chr21 36984073 36984118 -7923452 - L1M4 LINE L1 -2195 3951 3907 472 239 51 0 chr21 36984257 36984374 -7923196 + L2 LINE L2 3178 3300 -13 1296 175 35 0 chr21 36984625 36984853 -7922717 - MER46A DNA MER2_type 0 236 1 212 355 0 32 chr21 36984853 36984946 -7922624 + MIR SINE MIR 75 164 -98 228 247 0 52 chr21 36985713 36985790 -7921780 - L1ME3A LINE L1 0 6170 6098 2439 35 0 17 chr21 36985870 36986188 -7921382 - AluY SINE Alu 0 313 1 1453 291 47 14 chr21 36986190 36986785 -7920785 - L1ME3A LINE L1 -226 5944 5330 1048 196 127 27 chr21 36986796 36987056 -7920514 - AluJo SINE Alu -6 306 21 1112 114 0 0 chr21 36987087 36987278 -7920292 - AluY SINE Alu 0 323 133 956 172 0 0 chr21 36987396 36987541 -7920029 - AluJ SINE Alu -11 301 157 619 162 0 19 chr21 36987683 36987788 -7919782 - AluJ SINE Alu -149 163 61 234 294 136 42 chr21 36988428 36988642 -7918928 - L2 LINE L2 0 3313 3080 207 100 0 0 chr21 36988733 36988763 -7918807 + (CA)n Simple_repeat Simple_repeat 1 30 0 192 304 14 0 chr21 36989823 36989892 -7917678 - MIR SINE MIR -70 192 123 2076 165 58 0 chr21 36989929 36990292 -7917278 + MLT1B LTR MaLR 7 390 0 2011 135 0 10 chr21 36990661 36990957 -7916613 - AluJo SINE Alu -19 293 1 1579 268 71 41 chr21 36990963 36991580 -7915990 - HAL1 LINE L1 -839 1668 1028 2000 31 9 0 chr21 36991580 36991808 -7915762 - AluY SINE Alu -12 299 70 1579 268 71 41 chr21 36991808 36991868 -7915702 - HAL1 LINE L1 -1479 1028 971 2089 204 50 32 chr21 36991915 36992164 -7915406 - L1MB7 LINE L1 -16 6168 5904 2337 104 0 3 chr21 36992164 36992463 -7915107 - AluSq SINE Alu -15 298 1 2089 204 50 32 chr21 36992463 36992688 -7914882 - L1MB7 LINE L1 -280 5904 5685 267 212 0 111 chr21 36992689 36992788 -7914782 - L1MB7 LINE L1 -743 5441 5354 2039 70 0 0 chr21 36992906 36993164 -7914406 - L1PA7 LINE L1 -4 6150 5893 1887 167 0 3 chr21 36993190 36993490 -7914080 - AluSx SINE Alu -13 299 1 1062 282 180 30 chr21 36993490 36993888 -7913682 - HAL1 LINE L1 -1667 840 503 2450 74 0 3 chr21 36993888 36994185 -7913385 - AluY SINE Alu -15 296 1 1062 282 180 30 chr21 36994185 36994453 -7913117 - HAL1 LINE L1 -2004 503 74 215 341 67 28 chr21 36994533 36994712 -7912858 - MIR SINE MIR -54 208 23 221 321 109 0 chr21 36995206 36995343 -7912227 - MIR3 SINE MIR 0 208 57 1532 207 41 73 chr21 36995559 36995999 -7911571 + MLT1C LTR MaLR 34 459 -8 1839 141 0 50 chr21 36996116 36996414 -7911156 + AluJb SINE Alu 1 283 -29 1099 129 0 78 chr21 36996221 36996414 -7911156 + AluJb SINE Alu 106 312 0 229 35 0 0 chr21 36996414 36996443 -7911127 + (CAAAA)n Simple_repeat Simple_repeat 2 155 0 1216 134 9 69 chr21 36997913 36998145 -7909425 + MER20 DNA MER1_type 1 218 -1 302 78 0 20 chr21 36998584 36998635 -7908935 + (CA)n Simple_repeat Simple_repeat 2 51 0 1712 79 24 4 chr21 37001018 37001271 -7906299 - L1M1 LINE L1 -5291 2274 2017 466 321 90 19 chr21 37001274 37001486 -7906084 + MIR SINE MIR 25 251 -11 2073 112 0 0 chr21 37001887 37002173 -7905397 + AluSx SINE Alu 1 286 -26 230 210 0 32 chr21 37002479 37002541 -7905029 + GA-rich Low_complexity Low_complexity 1 60 0 638 296 157 14 chr21 37004741 37005085 -7902485 + MLT1J2 LTR MaLR 43 435 -15 261 374 95 38 chr21 37005291 37005660 -7901910 - L3b LINE CR1 -10 1573 1184 2264 201 49 22 chr21 37006056 37006548 -7901022 + MLT1D LTR MaLR 1 505 0 203 319 126 7 chr21 37006811 37006946 -7900624 + L2 LINE L2 2578 2728 -586 740 166 86 1 chr21 37006988 37007165 -7900405 + MER30 DNA MER1_type 16 230 0 1300 197 76 69 chr21 37007199 37007661 -7899909 + MER110A LTR ERV1 4 468 0 2024 192 36 59 chr21 37007743 37007885 -7899685 + MLT1D LTR MaLR 7 151 -354 2426 141 70 7 chr21 37007885 37008288 -7899282 + MSTA LTR MaLR 1 428 0 2024 192 36 59 chr21 37008288 37008651 -7898919 + MLT1D LTR MaLR 151 500 -5 2075 122 0 3 chr21 37008833 37009137 -7898433 - AluSp SINE Alu -10 303 1 2132 112 0 0 chr21 37010079 37010375 -7897195 + AluY SINE Alu 1 296 -15 1802 178 42 6 chr21 37010376 37010797 -7896773 - L1MB5 LINE L1 -9 6165 5666 1968 142 3 7 chr21 37010797 37011106 -7896464 - AluJo SINE Alu -4 308 1 1802 178 42 6 chr21 37011106 37011189 -7896381 - L1MB5 LINE L1 -508 5666 5587 220 319 58 51 chr21 37011194 37011332 -7896238 - MIR3 SINE MIR -60 148 10 300 197 8 177 chr21 37012003 37012179 -7895391 - L1M4 LINE L1 -3044 3102 2980 1973 74 4 4 chr21 37012179 37012435 -7895135 - AluY SINE Alu -55 256 1 300 197 8 177 chr21 37012435 37012512 -7895058 - L1M4 LINE L1 -3166 2980 2892 1621 241 87 12 chr21 37012515 37013019 -7894551 - MLT1H1 LTR MaLR 0 555 14 1959 158 66 6 chr21 37013019 37013385 -7894185 + MLT1B LTR MaLR 3 390 0 2105 133 0 0 chr21 37013426 37013728 -7893842 - AluSg SINE Alu -8 302 1 238 308 13 32 chr21 37013757 37013913 -7893657 - L1M4 LINE L1 -3323 2823 2671 701 171 8 0 chr21 37013970 37014087 -7893483 - MER89 LTR ERV1 0 559 442 1653 181 7 0 chr21 37014229 37014528 -7893042 + AluJb SINE Alu 3 303 -9 436 219 134 17 chr21 37015106 37015225 -7892345 - MIR SINE MIR -76 186 54 24 0 0 0 chr21 37015361 37015385 -7892185 + AT_rich Low_complexity Low_complexity 1 24 0 305 299 58 15 chr21 37017870 37018007 -7889563 + MIR3 SINE MIR 12 154 -54 2167 204 52 14 chr21 37018022 37018521 -7889049 + Charlie1b DNA MER1_type 5 522 -1 402 307 33 57 chr21 37018579 37018791 -7888779 + L2 LINE L2 3080 3286 -27 386 295 50 58 chr21 37019039 37019297 -7888273 - HERVL LTR ERVL -3666 1988 1733 14808 132 36 12 chr21 37019991 37022351 -7885219 - Tigger1 DNA MER2_type 0 2418 3 638 271 148 49 chr21 37022675 37022993 -7884577 + MLT1J LTR MaLR 81 441 -70 1821 163 0 7 chr21 37022993 37023300 -7884270 - AluSx SINE Alu -7 305 1 638 271 148 49 chr21 37023300 37023347 -7884223 + MLT1J LTR MaLR 441 482 -29 368 311 197 6 chr21 37023782 37023965 -7883605 + L3 LINE CR1 575 792 -785 793 295 157 31 chr21 37023994 37024133 -7883437 - L2 LINE L2 -1 3312 3192 1779 120 8 0 chr21 37024133 37024400 -7883170 + AluSx SINE Alu 44 312 0 793 295 157 31 chr21 37024400 37025074 -7882496 - L2 LINE L2 -121 3192 2398 189 364 0 0 chr21 37025077 37025176 -7882394 + L2 LINE L2 2553 2651 -663 1321 139 53 0 chr21 37025611 37025820 -7881750 - AluJb SINE Alu -6 306 87 846 234 188 11 chr21 37026382 37026733 -7880837 - MLT1D LTR MaLR -7 498 86 1743 131 51 0 chr21 37026733 37027008 -7880562 - AluSq SINE Alu -24 289 1 183 194 0 0 chr21 37027414 37027445 -7880125 + MIR SINE MIR 80 110 -152 738 290 94 24 chr21 37027703 37028044 -7879526 - L2 LINE L2 -4 3309 2945 436 230 35 0 chr21 37028156 37028269 -7879301 - L2 LINE L2 -530 2784 2668 1215 183 12 84 chr21 37028793 37029135 -7878435 + L1MB8 LINE L1 5771 6096 -82 1991 118 0 23 chr21 37029135 37029439 -7878131 - AluSx SINE Alu -2 310 14 304 161 46 69 chr21 37029485 37029530 -7878040 + L1MB7 LINE L1 6090 6134 -50 1896 165 73 0 chr21 37029530 37029870 -7877700 + MLT1A1 LTR MaLR 1 365 0 304 161 46 69 chr21 37029870 37029911 -7877659 + L1MB7 LINE L1 6134 6174 -10 616 184 28 0 chr21 37030218 37030327 -7877243 - MER45A DNA AcHobo 0 178 67 530 270 17 35 chr21 37031226 37031400 -7876170 + MIR3 SINE MIR 30 200 -8 228 241 30 21 chr21 37031581 37031732 -7875838 - MIR SINE MIR -13 249 20 189 294 49 98 chr21 37033333 37033496 -7874074 - MIR SINE MIR -2 260 106 185 366 116 9 chr21 37034447 37034559 -7873011 + MIR SINE MIR 24 147 -61 237 197 0 45 chr21 37035132 37035198 -7872372 + C-rich Low_complexity Low_complexity 1 63 0 385 209 6 37 chr21 37035213 37035376 -7872194 + C-rich Low_complexity Low_complexity 2 159 0 181 271 34 17 chr21 37037647 37037706 -7869864 + MIR SINE MIR 79 138 -70 347 41 20 0 chr21 37038061 37038110 -7869460 + (TG)n Simple_repeat Simple_repeat 2 51 0 614 223 199 6 chr21 37038558 37038799 -7868771 - MER33 DNA MER1_type -51 273 1 344 331 23 15 chr21 37039640 37039770 -7867800 + MIR3 SINE MIR 15 145 -63 857 211 0 22 chr21 37041316 37041496 -7866074 - FRAM SINE Alu 0 176 1 2068 88 3 7 chr21 37041980 37042265 -7865305 + AluSg SINE Alu 1 284 -26 264 30 0 0 chr21 37044652 37044685 -7862885 + (TG)n Simple_repeat Simple_repeat 2 34 0 1881 109 14 32 chr21 37045130 37045414 -7862156 + AluSx SINE Alu 1 279 -33 1067 121 0 6 chr21 37045417 37045590 -7861980 + (GGAA)n Simple_repeat Simple_repeat 3 174 0 309 282 86 17 chr21 37046088 37046205 -7861365 + L2 LINE L2 3189 3313 0 1190 190 40 43 chr21 37046687 37046987 -7860583 + MER33 DNA MER1_type 26 324 0 218 310 35 26 chr21 37047483 37047599 -7859971 + MIR3 SINE MIR 15 131 -77 240 268 99 0 chr21 37048279 37048350 -7859220 - L2 LINE L2 -31 3282 3205 1401 226 82 18 chr21 37048405 37048795 -7858775 - L1ME3 LINE L1 0 6162 5748 21 0 0 0 chr21 37052896 37052917 -7854653 + AT_rich Low_complexity Low_complexity 1 21 0 228 35 0 0 chr21 37053097 37053126 -7854444 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 356 221 13 0 chr21 37054241 37054318 -7853252 + MER116 DNA Mariner 3 80 0 2906 173 139 6 chr21 37054887 37054934 -7852636 - Charlie1a DNA MER1_type -1337 1424 1385 827 192 104 16 chr21 37054934 37055127 -7852443 - MER63A DNA MER1_type 0 210 1 2906 173 139 6 chr21 37055127 37055806 -7851764 - Charlie1a DNA MER1_type -1376 1385 601 1719 200 98 77 chr21 37056086 37056378 -7851192 - Charlie1a DNA MER1_type -2178 583 299 1740 148 93 0 chr21 37056378 37056648 -7850922 + AluSx SINE Alu 1 295 -17 1719 200 98 77 chr21 37056648 37056925 -7850645 - Charlie1a DNA MER1_type -2462 299 2 1810 193 0 0 chr21 37057252 37057542 -7850028 - AluJo SINE Alu -22 290 1 321 26 0 0 chr21 37057778 37057816 -7849754 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7941 12 4 0 chr21 37057816 37059114 -7848456 - L1PA3 LINE L1 -16 6139 4841 9877 30 0 0 chr21 37059114 37060262 -7847308 + L1PA3 LINE L1 3688 4835 -1311 269 237 40 0 chr21 37060508 37060584 -7846986 + MIR SINE MIR 61 139 -123 358 225 33 33 chr21 37061736 37061856 -7845714 - MIR SINE MIR -39 223 104 272 311 11 0 chr21 37062564 37062654 -7844916 + (CA)n Simple_repeat Simple_repeat 2 92 0 237 260 0 0 chr21 37062678 37062755 -7844815 + (CA)n Simple_repeat Simple_repeat 1 77 0 1829 168 2 88 chr21 37062830 37063253 -7844317 - MLT1B LTR MaLR 0 390 4 500 171 0 0 chr21 37063278 37063366 -7844204 - L1M1 LINE L1 -686 5617 5530 3930 191 43 21 chr21 37063369 37064285 -7843285 - L1M1 LINE L1 -753 5393 4458 1940 128 53 4 chr21 37065429 37065710 -7841860 + AluSx SINE Alu 1 295 -17 2424 58 6 16 chr21 37065964 37066277 -7841293 + AluY SINE Alu 1 310 -1 402 21 0 0 chr21 37067192 37067239 -7840331 + (CA)n Simple_repeat Simple_repeat 2 48 0 309 281 42 113 chr21 37067428 37067666 -7839904 - LTR33 LTR ERVL 0 521 301 299 229 0 14 chr21 37067775 37067845 -7839725 - L2 LINE L2 -212 3060 2992 258 276 123 52 chr21 37068360 37068628 -7838942 + L2 LINE L2 2416 2702 -612 388 228 29 81 chr21 37068738 37068874 -7838696 - MER94 DNA DNA -1 133 5 360 276 0 9 chr21 37069416 37069532 -7838038 - MER5B DNA MER1_type -63 115 1 1925 131 3 36 chr21 37069815 37070120 -7837450 - AluSx SINE Alu -13 299 5 1538 195 157 38 chr21 37070302 37070753 -7836817 - MLT1D LTR MaLR 0 505 1 2257 244 29 16 chr21 37071273 37071887 -7835683 + MLT1E2 LTR MaLR 1 622 -4 384 208 50 88 chr21 37071958 37072076 -7835494 - L1ME4a LINE L1 -1 6120 6008 1405 195 12 102 chr21 37072076 37072487 -7835083 + MLT1A2 LTR MaLR 1 374 0 384 208 50 88 chr21 37072487 37072527 -7835043 - L1ME4a LINE L1 -113 6008 5968 3197 206 72 18 chr21 37072690 37072760 -7834810 - L1ME2 LINE L1 0 6164 6099 2244 152 105 5 chr21 37072760 37073149 -7834421 - MSTA LTR MaLR 0 428 1 3197 206 72 18 chr21 37073149 37073924 -7833646 - L1ME2 LINE L1 -65 6099 5273 415 235 59 0 chr21 37073935 37074020 -7833550 - Tigger5 DNA MER2_type 0 2323 2234 459 122 12 12 chr21 37074061 37074143 -7833427 - L1ME2 LINE L1 -922 5224 5143 1616 151 104 38 chr21 37074150 37074495 -7833075 + THE1C LTR MaLR 8 375 0 2223 235 43 24 chr21 37074587 37074895 -7832675 - L1ME2 LINE L1 -1070 5076 4775 1775 136 178 0 chr21 37074895 37075204 -7832366 - THE1B LTR MaLR 0 364 1 2223 235 43 24 chr21 37075204 37075632 -7831938 - L1ME2 LINE L1 -1371 4775 4326 203 326 0 0 chr21 37075632 37075721 -7831849 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 563 283 36 55 chr21 37075976 37076284 -7831286 - L1ME4a LINE L1 -344 5777 5476 549 165 6 40 chr21 37076487 37076620 -7830950 - MSTD LTR MaLR -290 106 1 1151 157 105 0 chr21 37078082 37078311 -7829259 - L1MA9 LINE L1 -8 6304 6052 1640 185 20 0 chr21 37078365 37078668 -7828902 - AluJb SINE Alu -3 309 1 270 305 74 35 chr21 37078673 37078876 -7828694 - HAL1 LINE L1 0 2507 2297 967 164 0 45 chr21 37078919 37079096 -7828474 + MLT1D LTR MaLR 21 189 -316 1632 181 72 16 chr21 37079124 37079500 -7828070 + MLT1D LTR MaLR 109 505 0 2453 272 160 42 chr21 37079535 37081521 -7826049 - HAL1 LINE L1 -279 2228 10 2127 110 0 3 chr21 37081535 37081817 -7825753 + AluSq SINE Alu 1 281 -32 252 0 0 0 chr21 37081819 37081847 -7825723 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 965 283 100 15 chr21 37081963 37082492 -7825078 + L2 LINE L2 2470 3053 -260 361 316 161 0 chr21 37082691 37082846 -7824724 - MER5A DNA MER1_type 0 189 10 534 292 69 9 chr21 37083281 37083497 -7824073 - MIR SINE MIR -8 254 26 668 263 8 42 chr21 37083631 37083867 -7823703 + L1MCb LINE L1 346 573 -5334 2547 227 54 42 chr21 37083881 37085248 -7822322 + L1MCb LINE L1 1130 2714 -3893 1441 191 48 31 chr21 37085234 37085585 -7821985 + L1MC2 LINE L1 5988 6344 0 * 1800 181 7 0 chr21 37085589 37085893 -7821677 + AluJo SINE Alu 1 306 -6 186 43 0 0 chr21 37085901 37085924 -7821646 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 228 235 106 24 chr21 37086316 37086401 -7821169 + MLT1J2 LTR MaLR 272 363 -87 260 276 124 27 chr21 37087908 37088093 -7819477 - LTR33 LTR ERVL -13 508 306 339 276 200 56 chr21 37088310 37088705 -7818865 - L2 LINE L2 0 3313 2862 300 200 0 14 chr21 37089458 37089528 -7818042 - L2 LINE L2 -212 3060 2992 244 221 311 0 chr21 37089533 37089655 -7817915 - MER5A DNA MER1_type 0 189 30 228 115 0 77 chr21 37089701 37089753 -7817817 + (GGAAA)n Simple_repeat Simple_repeat 4 51 0 273 167 0 0 chr21 37090286 37090340 -7817230 + (TA)n Simple_repeat Simple_repeat 1 54 0 488 225 18 0 chr21 37090527 37090638 -7816932 - L2 LINE L2 0 3313 3201 293 179 0 0 chr21 37091069 37091125 -7816445 + MIR SINE MIR 83 138 -124 686 155 52 13 chr21 37091221 37091376 -7816194 - MER96B DNA MER1_type? -176 241 81 507 204 0 0 chr21 37091376 37091469 -7816101 + AluJ/FLAM SINE Alu 2 94 -218 529 247 96 0 chr21 37091490 37091636 -7815934 - MIR SINE MIR -91 171 12 283 301 41 7 chr21 37094053 37094199 -7813371 + CT-rich Low_complexity Low_complexity 1 151 0 2149 145 38 8 chr21 37094201 37094566 -7813004 + MSTD LTR MaLR 1 376 -20 247 211 0 19 chr21 37094928 37094980 -7812590 + GA-rich Low_complexity Low_complexity 5 55 0 7886 164 14 32 chr21 37095183 37095916 -7811654 + L1MA8 LINE L1 3801 4545 -1767 2028 124 3 7 chr21 37095916 37096215 -7811355 + AluSg SINE Alu 1 298 -12 7886 164 14 32 chr21 37096215 37096818 -7810752 + L1MA8 LINE L1 4545 5157 -1155 2188 89 4 0 chr21 37096818 37097154 -7810416 + AluSg SINE Alu 1 337 0 7886 164 14 32 chr21 37097154 37097816 -7809754 + L1MA8 LINE L1 5157 5777 -535 746 161 47 13 chr21 37097846 37097995 -7809575 - MSTD LTR MaLR -47 349 196 2787 145 17 0 chr21 37098001 37098469 -7809101 + L1MA8 LINE L1 5816 6291 0 487 238 116 17 chr21 37098996 37099168 -7808402 + MIR SINE MIR 48 236 -26 264 270 16 0 chr21 37099168 37099231 -7808339 - Charlie4a DNA MER1_type -21 487 424 5660 147 29 62 chr21 37099233 37099751 -7807819 - L1MA9 LINE L1 0 6312 5778 291 93 0 0 chr21 37099751 37099794 -7807776 + (TG)n Simple_repeat Simple_repeat 2 44 0 5660 147 29 62 chr21 37099794 37100750 -7806820 - L1MA9 LINE L1 -534 5778 4876 1366 227 65 13 chr21 37100754 37101141 -7806429 - Charlie4a DNA MER1_type -68 440 34 804 146 132 21 chr21 37101622 37101766 -7805804 - AluJo SINE Alu -3 309 150 1922 147 147 11 chr21 37101768 37102129 -7805441 + MSTA LTR MaLR 1 410 -18 991 139 0 25 chr21 37102139 37102297 -7805273 - AluJo SINE Alu -158 154 1 518 278 120 26 chr21 37102552 37102786 -7804784 + MLT1K LTR MaLR 323 578 -10 2488 18 7 4 chr21 37103822 37104142 -7803428 + AluY SINE Alu 1 321 0 1624 222 83 7 chr21 37104974 37105397 -7802173 + MLT1C LTR MaLR 6 460 -7 2564 258 52 12 chr21 37106806 37107563 -7800007 - L1ME3 LINE L1 -35 6196 5410 910 211 10 29 chr21 37107574 37107783 -7799787 - MER58A DNA MER1_type -19 205 1 260 283 65 0 chr21 37107790 37107882 -7799688 - L1ME3 LINE L1 -993 5420 5323 289 298 106 14 chr21 37108487 37108628 -7798942 - MIR SINE MIR -108 154 1 380 285 32 39 chr21 37108642 37108808 -7798762 - MIR3 SINE MIR -13 195 29 3120 254 94 43 chr21 37110203 37111244 -7796326 - L1ME3 LINE L1 -2754 3461 2474 2091 161 5 53 chr21 37111244 37111660 -7795910 + L1PA16 LINE L1 5764 6159 -7 3120 254 94 43 chr21 37111660 37112152 -7795418 - L1ME3 LINE L1 -3741 2474 2009 2152 136 7 0 chr21 37112152 37112462 -7795108 + AluSx SINE Alu 1 312 0 3120 254 94 43 chr21 37112462 37113205 -7794365 - L1ME3 LINE L1 -4206 2009 1110 226 143 167 0 chr21 37113208 37113250 -7794320 + MER34B LTR ERV1 5 53 -512 * 3299 130 90 12 chr21 37113225 37113803 -7793767 + LTR48B LTR ERV1 22 644 0 3954 178 46 74 chr21 37113805 37115156 -7792414 + LTR48B-int LTR ERV1 1 1209 -5122 259 247 0 82 chr21 37115161 37115234 -7792336 + tRNA-Glu-GAG tRNA tRNA 8 74 -1 299 138 81 172 chr21 37115541 37115715 -7791855 + LTR48B-int LTR ERV1 1372 1529 -4802 299 140 40 0 chr21 37115950 37116000 -7791570 + LTR48B-int LTR ERV1 1602 1653 -4678 * 432 228 30 23 chr21 37115996 37116196 -7791374 + LTR48B-int LTR ERV1 297 560 -4376 776 262 32 5 chr21 37116266 37116453 -7791117 + LTR48B-int LTR ERV1 1909 2100 -4231 * 1497 143 31 69 chr21 37116445 37116823 -7790747 + LTR48B-int LTR ERV1 1347 3272 -169 540 129 24 0 chr21 37116877 37116962 -7790608 + LTR48B-int LTR ERV1 3264 3350 -2981 615 179 0 0 chr21 37117009 37117115 -7790455 + LTR48B-int LTR ERV1 3348 3453 -2878 1553 181 3 83 chr21 37117288 37117625 -7789945 + AluJb SINE Alu 1 310 -2 339 203 56 42 chr21 37117630 37117773 -7789797 + LTR48B-int LTR ERV1 1722 1866 -3257 * 6691 179 69 52 chr21 37117769 37119450 -7788120 + LTR48B-int LTR ERV1 4614 6323 -8 1795 119 68 37 chr21 37119453 37120000 -7787570 + LTR48B LTR ERV1 5 610 -34 1221 297 88 44 chr21 37120008 37120219 -7787351 - L1MEc LINE L1 -5280 1116 916 2787 80 11 16 chr21 37120219 37120596 -7786974 - THE1C LTR MaLR 0 375 1 1221 297 88 44 chr21 37120596 37121431 -7786139 - L1MEc LINE L1 -5480 916 24 424 280 108 15 chr21 37121455 37121723 -7785847 - L1M4 LINE L1 -2848 3298 3006 3896 162 76 5 chr21 37121809 37122582 -7784988 - L1MB7 LINE L1 0 6184 5357 679 149 0 0 chr21 37122647 37122754 -7784816 - L1MB7 LINE L1 -1140 5006 4900 318 287 29 86 chr21 37123646 37123855 -7783715 + LTR67 LTR ERVL 354 550 -7 750 234 113 47 chr21 37125122 37125545 -7782025 + L1MC5 LINE L1 7473 7923 -38 21 36 0 0 chr21 37125592 37125620 -7781950 + AT_rich Low_complexity Low_complexity 1 28 0 366 318 50 50 chr21 37125763 37126046 -7781524 + L1M4 LINE L1 3590 3872 -2274 25 0 0 0 chr21 37126658 37126683 -7780887 + AT_rich Low_complexity Low_complexity 1 25 0 291 267 0 0 chr21 37127734 37127794 -7779776 - L2 LINE L2 -8 3264 3205 3803 191 40 50 chr21 37127853 37128761 -7778809 + L1ME2 LINE L1 5263 6161 -3 1956 166 60 17 chr21 37129464 37129520 -7778050 + MLT1A1 LTR MaLR 1 53 -312 2296 125 33 25 chr21 37129520 37129881 -7777689 + THE1B LTR MaLR 1 364 0 1956 166 60 17 chr21 37129881 37130174 -7777396 + MLT1A1 LTR MaLR 53 365 0 818 284 26 36 chr21 37130530 37130914 -7776656 + L2 LINE L2 2805 3184 -129 390 253 42 48 chr21 37130935 37131101 -7776469 + L2 LINE L2 3149 3313 0 2664 145 21 23 chr21 37131132 37131567 -7776003 - Tigger2a DNA MER2_type 0 434 1 185 231 0 0 chr21 37133136 37133175 -7774395 - L2 LINE L2 -9 3304 3266 315 0 0 0 chr21 37133629 37133664 -7773906 + (TG)n Simple_repeat Simple_repeat 2 36 0 1488 189 12 81 chr21 37134248 37134581 -7772989 + MLT2B1 LTR ERVL 155 464 -56 399 73 0 0 chr21 37134586 37134641 -7772929 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 2747 123 12 10 chr21 37134736 37135141 -7772429 - LTR9B LTR ERV1 0 644 239 183 225 0 0 chr21 37135151 37135222 -7772348 + C-rich Low_complexity Low_complexity 1 71 0 181 229 148 0 chr21 37135403 37135464 -7772106 + MIR SINE MIR 65 134 -128 2706 30 3 0 chr21 37135865 37136165 -7771405 - AluY SINE Alu -6 305 5 219 285 115 23 chr21 37136398 37136528 -7771042 - MIR3 SINE MIR -61 147 6 3198 152 91 3 chr21 37137542 37138114 -7769456 + LTR29 LTR ERV1 1 622 0 282 222 111 19 chr21 37138121 37138229 -7769341 + L2 LINE L2 3146 3263 -9 353 320 85 15 chr21 37138256 37138456 -7769114 - MIR SINE MIR -34 228 15 292 125 0 0 chr21 37138678 37138718 -7768852 - MER81 DNA DNA -32 82 43 439 297 62 27 chr21 37141094 37141353 -7766217 - L3 LINE CR1 -546 1031 764 204 381 21 21 chr21 37141436 37141533 -7766037 - L3 LINE CR1 -1044 533 437 448 286 13 39 chr21 37141534 37141688 -7765882 - MIR3 SINE MIR -10 198 49 2064 173 7 31 chr21 37141838 37142259 -7765311 + L1MB7 LINE L1 5751 6161 -23 333 57 63 88 chr21 37143196 37143355 -7764215 + (CACAA)n Simple_repeat Simple_repeat 5 159 0 216 178 44 50 chr21 37143389 37143569 -7764001 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 * 266 106 113 6 chr21 37143541 37143701 -7763869 + (CA)n Simple_repeat Simple_repeat 2 178 0 405 86 63 40 chr21 37143745 37143920 -7763650 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 143 0 0 chr21 37143947 37144010 -7763560 + (TC)n Simple_repeat Simple_repeat 1 63 0 324 253 0 0 chr21 37144849 37144940 -7762630 + (TA)n Simple_repeat Simple_repeat 1 91 0 341 329 44 0 chr21 37145789 37145926 -7761644 + MIR SINE MIR 50 192 -70 1039 89 6 22 chr21 37146145 37146225 -7761345 + (GGAA)n Simple_repeat Simple_repeat 1 254 0 1039 89 6 22 chr21 37146225 37146404 -7761166 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 226 109 0 87 chr21 37146717 37146763 -7760807 + L2 LINE L2 3272 3313 0 2440 88 3 0 chr21 37147156 37147453 -7760117 - AluSp SINE Alu -15 298 1 365 250 94 16 chr21 37149700 37149828 -7757742 - MER103 DNA DNA -6 160 23 1510 155 0 0 chr21 37149843 37150069 -7757501 - AluJo SINE Alu 0 312 87 422 188 143 9 chr21 37151144 37151256 -7756314 + L1MB3 LINE L1 5739 5865 -318 5262 113 19 2 chr21 37151824 37152629 -7754941 - L1PA13 LINE L1 0 6163 5346 2481 54 3 3 chr21 37153693 37153989 -7753581 + AluY SINE Alu 1 296 -15 430 328 183 23 chr21 37154308 37154701 -7752869 - L2 LINE L2 -1 3312 2857 639 225 16 0 chr21 37154877 37155006 -7752564 + FLAM_A SINE Alu 1 131 -2 747 168 53 26 chr21 37155207 37155397 -7752173 + MER20 DNA MER1_type 1 195 -24 866 131 8 0 chr21 37155870 37155992 -7751578 + FLAM_C SINE Alu 1 123 -20 1973 144 26 49 chr21 37156087 37156477 -7751093 + MLT1B LTR MaLR 7 387 -3 561 341 113 16 chr21 37156485 37156630 -7750940 - L3 LINE CR1 -16 1561 1431 1674 216 78 47 chr21 37156630 37157120 -7750450 - MLT1D LTR MaLR 0 505 1 561 341 113 16 chr21 37157120 37157469 -7750101 - L3 LINE CR1 -146 1431 1019 214 340 50 10 chr21 37157565 37157665 -7749905 + L2 LINE L2 3164 3267 -5 564 284 7 0 chr21 37158307 37158455 -7749115 + MER106B DNA MER1_type 5 153 -906 337 147 15 15 chr21 37158934 37159002 -7748568 - MLT1D LTR MaLR 0 505 438 1898 183 61 71 chr21 37159011 37159081 -7748489 - MER34B LTR ERV1 -2 540 471 1330 184 122 49 chr21 37159081 37159450 -7748120 + MSTD LTR MaLR 1 396 0 1898 183 61 71 chr21 37159450 37159940 -7747630 - MER34B LTR ERV1 -71 471 14 418 162 169 70 chr21 37159956 37160098 -7747472 - MLT1D LTR MaLR -349 156 1 1500 202 77 53 chr21 37161200 37161587 -7745983 + MLT1C LTR MaLR 1 402 -65 1952 161 3 16 chr21 37161587 37161903 -7745667 - AluJb SINE Alu 0 312 1 1500 202 77 53 chr21 37161903 37161971 -7745599 + MLT1C LTR MaLR 402 467 0 2090 116 26 22 chr21 37162042 37162353 -7745217 - AluSx SINE Alu 0 312 1 754 239 33 0 chr21 37162923 37163103 -7744467 - MER5A DNA MER1_type 0 189 4 616 124 0 102 chr21 37163493 37163534 -7744036 + MLT1D LTR MaLR 1 45 -345 2199 123 3 3 chr21 37163534 37163835 -7743735 + AluSx SINE Alu 1 301 -11 616 124 0 102 chr21 37163835 37163930 -7743640 + MLT1D LTR MaLR 45 123 -267 2130 116 14 0 chr21 37163970 37164263 -7743307 - AluSx SINE Alu -15 297 1 1161 232 70 31 chr21 37164267 37164650 -7742920 + MLT1D LTR MaLR 108 505 0 220 269 0 19 chr21 37164656 37164708 -7742862 - MIR SINE MIR -194 68 18 611 232 38 43 chr21 37164753 37164964 -7742606 - L1ME2 LINE L1 -47 6117 5908 873 218 63 32 chr21 37164990 37165275 -7742295 - L1ME2 LINE L1 -367 5797 5504 259 117 67 0 chr21 37165766 37165826 -7741744 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 212 291 94 51 chr21 37166394 37166511 -7741059 - MIR SINE MIR -62 146 25 246 116 0 0 chr21 37166875 37166918 -7740652 + (CA)n Simple_repeat Simple_repeat 1 43 0 315 306 42 28 chr21 37166926 37167070 -7740500 - MIR SINE MIR -61 201 56 410 280 108 19 chr21 37167347 37167504 -7740066 - MER91A DNA MER1_type -25 171 1 241 255 14 0 chr21 37167714 37167855 -7739715 + CT-rich Low_complexity Low_complexity 2 144 0 1844 182 51 14 chr21 37168398 37168750 -7738820 - MLT1A1 LTR MaLR 0 365 1 1269 212 86 37 chr21 37168928 37169358 -7738212 + Charlie4a DNA MER1_type 40 490 -18 2371 103 10 0 chr21 37169717 37170027 -7737543 + AluSp SINE Alu 1 313 0 678 259 10 35 chr21 37170266 37170329 -7737241 - MIR SINE MIR -21 241 178 2271 127 21 26 chr21 37170329 37170706 -7736864 + THE1C LTR MaLR 1 375 0 678 259 10 35 chr21 37170706 37170839 -7736731 - MIR SINE MIR -84 178 50 1956 120 77 40 chr21 37170960 37171311 -7736259 + THE1B LTR MaLR 1 364 0 448 243 167 24 chr21 37171890 37172100 -7735470 - L1ME1 LINE L1 -18 6148 5909 1586 208 0 10 chr21 37172935 37173238 -7734332 + AluJb SINE Alu 9 308 -4 419 148 46 74 chr21 37173293 37173401 -7734169 + MLT1D LTR MaLR 3 107 -398 644 280 29 12 chr21 37173448 37173691 -7733879 + MLT1E2 LTR MaLR 310 556 -70 32 0 0 0 chr21 37173896 37173928 -7733642 + AT_rich Low_complexity Low_complexity 1 32 0 764 218 40 45 chr21 37174065 37174267 -7733303 + MER20 DNA MER1_type 2 202 -17 266 296 113 0 chr21 37174277 37174392 -7733178 + L2 LINE L2 3139 3266 -6 2274 96 3 0 chr21 37174698 37175003 -7732567 + AluSx SINE Alu 1 306 0 195 162 0 0 chr21 37176004 37176041 -7731529 + GA-rich Low_complexity Low_complexity 2 38 0 240 250 167 15 chr21 37176041 37176173 -7731397 + MIR3 SINE MIR 21 172 -36 289 304 109 30 chr21 37176524 37176754 -7730816 - MLT1J LTR MaLR -2 509 262 444 218 10 10 chr21 37176782 37176883 -7730687 - MLT1J LTR MaLR -342 169 69 829 175 48 0 chr21 37177313 37177479 -7730091 - MER20 DNA MER1_type -26 193 20 384 274 103 0 chr21 37177835 37177952 -7729618 + L2 LINE L2 3144 3272 0 860 255 20 44 chr21 37178045 37178296 -7729274 - MIR SINE MIR -16 246 2 508 276 173 5 chr21 37178598 37178812 -7728758 + MLT1K LTR MaLR 332 581 -7 2477 86 77 3 chr21 37179688 37180037 -7727533 + THE1C LTR MaLR 1 375 0 2102 184 93 14 chr21 37181574 37182070 -7725500 - L1MB5 LINE L1 0 6174 5640 272 302 103 0 chr21 37182084 37182200 -7725370 - MIR3 SINE MIR -70 138 11 2198 125 0 3 chr21 37182856 37183161 -7724409 + AluSx SINE Alu 1 304 -8 282 265 27 95 chr21 37183806 37183953 -7723617 - MIR SINE MIR -73 189 53 202 328 16 0 chr21 37184405 37184466 -7723104 + MIR SINE MIR 92 153 -109 2215 180 54 5 chr21 37184500 37184944 -7722626 + L1MB3 LINE L1 5715 6180 -3 239 250 17 17 chr21 37185025 37185085 -7722485 + MER5B DNA MER1_type 75 134 -44 774 189 51 34 chr21 37185284 37185459 -7722111 + MER45A DNA AcHobo 1 178 0 468 356 36 13 chr21 37185924 37186149 -7721421 - MIR SINE MIR -7 255 26 456 290 195 45 chr21 37187089 37187745 -7719825 - L2 LINE L2 0 3313 2561 189 0 0 0 chr21 37188553 37188574 -7718996 + (CAGAA)n Simple_repeat Simple_repeat 5 25 0 1314 196 106 42 chr21 37188733 37189167 -7718403 + MLT1C LTR MaLR 6 467 0 438 182 149 0 chr21 37189169 37189290 -7718280 + MLT1E3 LTR MaLR 443 581 -43 1839 204 37 35 chr21 37190771 37190820 -7716750 - MLT1D LTR MaLR -2 503 456 2496 80 0 0 chr21 37190820 37191122 -7716448 + AluSg SINE Alu 1 302 -8 1839 204 37 35 chr21 37191122 37191529 -7716041 - MLT1D LTR MaLR -49 456 46 461 353 68 7 chr21 37191770 37192212 -7715358 + L2 LINE L2 2506 2974 -340 2167 163 49 51 chr21 37192317 37192699 -7714871 + MLT1C LTR MaLR 18 399 -68 243 0 0 0 chr21 37192699 37192726 -7714844 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2104 101 4 11 chr21 37192734 37193011 -7714559 - AluSc SINE Alu -32 277 3 2167 163 49 51 chr21 37193011 37193068 -7714502 + MLT1C LTR MaLR 406 465 -2 288 0 0 0 chr21 37193357 37193389 -7714181 + (TG)n Simple_repeat Simple_repeat 2 33 0 789 113 8 65 chr21 37193389 37193513 -7714057 - FLAM_C SINE Alu -16 117 1 2478 73 0 0 chr21 37193521 37193809 -7713761 - AluSc SINE Alu -21 288 1 270 239 28 0 chr21 37193933 37194004 -7713566 + LTR67 LTR ERVL 443 515 -42 260 326 102 20 chr21 37194077 37194273 -7713297 + L2 LINE L2 3075 3286 -27 216 0 0 0 chr21 37194531 37194555 -7713015 + (A)n Simple_repeat Simple_repeat 1 24 0 3610 112 68 31 chr21 37194623 37195210 -7712360 + MER4B LTR ERV1 1 609 -1 772 198 84 0 chr21 37195396 37195563 -7712007 + MER58A DNA MER1_type 43 223 -1 593 270 80 31 chr21 37195717 37196006 -7711564 + MLT1I LTR MaLR 101 403 -6 21 0 0 0 chr21 37196069 37196090 -7711480 + GC_rich Low_complexity Low_complexity 1 21 0 741 267 5 11 chr21 37196301 37196488 -7711082 - MIR SINE MIR -31 231 46 2768 98 30 41 chr21 37196838 37196882 -7710688 + MER57B LTR ERV1 1 44 -390 2349 109 3 3 chr21 37196882 37197194 -7710376 - AluSx SINE Alu 0 312 1 2768 98 30 41 chr21 37197194 37197588 -7709982 + MER57B LTR ERV1 44 434 0 184 369 64 45 chr21 37198743 37198900 -7708670 - MIR SINE MIR -71 191 32 221 0 35 0 chr21 37200396 37200425 -7707145 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 949 187 25 0 chr21 37200866 37201064 -7706506 - L1MCb LINE L1 -4935 1110 908 * 993 210 77 13 chr21 37201063 37201296 -7706274 - L1MCb LINE L1 -6167 397 150 2942 16 0 0 chr21 37201874 37202191 -7705379 + AluYb8 SINE Alu 1 317 -1 1957 173 0 3 chr21 37202202 37202515 -7705055 + AluJo SINE Alu 1 312 0 273 119 0 0 chr21 37203476 37203518 -7704052 + (TC)n Simple_repeat Simple_repeat 1 42 0 328 327 19 9 chr21 37204205 37204312 -7703258 - MIR3 SINE MIR 0 208 101 407 396 11 0 chr21 37205685 37205872 -7701698 + MIR SINE MIR 24 212 -50 234 283 133 9 chr21 37207142 37207255 -7700315 + L2 LINE L2 3145 3271 -1 1454 107 11 19 chr21 37207459 37207702 -7699868 - L1PA6 LINE L1 -232 5922 5680 246 244 167 11 chr21 37207802 37207892 -7699678 - MER5A DNA MER1_type -32 157 54 3387 145 11 5 chr21 37207894 37208465 -7699105 - L1PA16 LINE L1 -9 6157 5584 1094 95 35 0 chr21 37208472 37208641 -7698929 - L1MA2 LINE L1 0 6304 6130 984 133 100 2 chr21 37208646 37208679 -7698891 - L1MC/D LINE L1 -574 5592 5564 833 75 38 23 chr21 37208679 37208812 -7698758 - L1PA13 LINE L1 -1 6162 6028 984 133 100 2 chr21 37208812 37208969 -7698601 - L1MC/D LINE L1 -602 5564 5420 1140 83 7 0 chr21 37211572 37211716 -7695854 - AluSc SINE Alu -12 297 153 284 279 63 19 chr21 37212006 37212098 -7695472 + MER3 DNA MER1_type 45 148 -61 2069 104 0 43 chr21 37212098 37212397 -7695173 - AluSx SINE Alu -25 287 2 284 279 63 19 chr21 37212397 37212462 -7695108 + MER3 DNA MER1_type 148 209 0 659 168 25 68 chr21 37212744 37212905 -7694665 + MLT1C LTR MaLR 8 161 -306 4172 108 14 0 chr21 37212908 37213527 -7694043 - L1PA13 LINE L1 -13 6150 5523 447 213 83 0 chr21 37213729 37213837 -7693733 + Charlie4 DNA MER1_type 1 117 -1844 1510 241 50 46 chr21 37213846 37214345 -7693225 + Charlie4a DNA MER1_type 8 508 0 1590 216 119 9 chr21 37216998 37217419 -7690151 - MLT1C LTR MaLR 0 467 1 827 148 97 23 chr21 37217705 37217881 -7689689 + MER53 DNA DNA 1 189 0 4404 181 45 5 chr21 37218035 37218910 -7688660 - MER49 LTR ERV1 -9 914 5 210 292 0 0 chr21 37219415 37219463 -7688107 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 1264 197 118 22 chr21 37220687 37221043 -7686527 + MLT1B LTR MaLR 1 390 0 202 148 25 66 chr21 37224009 37224131 -7683439 + (TCTCTG)n Simple_repeat Simple_repeat 4 120 0 465 97 32 81 chr21 37224154 37224340 -7683230 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 199 305 0 84 chr21 37224625 37224720 -7682850 - L2 LINE L2 -1 3312 3226 2131 150 34 8 chr21 37224874 37225254 -7682316 - MLT1B LTR MaLR 0 390 1 677 214 112 43 chr21 37225409 37225712 -7681858 + LTR33 LTR ERVL 171 494 -27 249 333 85 7 chr21 37225712 37225853 -7681717 - L2 LINE L2 -1224 2090 1939 182 171 24 0 chr21 37226085 37226126 -7681444 + (TG)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr21 37226225 37226255 -7681315 + AT_rich Low_complexity Low_complexity 1 30 0 616 187 29 43 chr21 37226377 37226516 -7681054 - L1MC1 LINE L1 0 6333 6197 743 226 0 1 chr21 37227077 37227249 -7680321 + L1MB3 LINE L1 5298 5470 -713 6132 77 12 0 chr21 37227292 37228410 -7679160 - L1PA14 LINE L1 -9 6152 5057 3403 176 38 4 chr21 37228428 37229106 -7678464 + L1MB3 LINE L1 5476 6176 -7 234 324 74 0 chr21 37230036 37230144 -7677426 - L3b LINE CR1 -222 1361 1246 609 225 44 0 chr21 37230361 37230521 -7677049 - MER5A DNA MER1_type 0 189 23 715 174 150 0 chr21 37231071 37231238 -7676332 + AluJo SINE Alu 121 312 0 222 250 0 36 chr21 37231481 37231497 -7676073 + (TG)n Simple_repeat Simple_repeat 1 16 -38 1232 194 153 67 chr21 37231497 37231962 -7675608 + MLT1D LTR MaLR 1 505 0 222 250 0 36 chr21 37231962 37232001 -7675569 + (TG)n Simple_repeat Simple_repeat 16 54 0 284 241 114 14 chr21 37234111 37234255 -7673315 - MIR SINE MIR -63 145 30 252 268 0 0 chr21 37234536 37234607 -7672963 + G-rich Low_complexity Low_complexity 1 71 0 1361 203 128 35 chr21 37234698 37235121 -7672449 - MLT1C LTR MaLR 0 467 6 818 186 99 0 chr21 37237053 37237225 -7670345 + MER5A DNA MER1_type 1 189 0 189 203 186 0 chr21 37237465 37237524 -7670046 - MIR SINE MIR -23 239 170 577 232 9 0 chr21 37237584 37237696 -7669874 - MIR SINE MIR -62 146 34 313 278 45 30 chr21 37237775 37237925 -7669645 - MIR3 SINE MIR -32 176 17 194 336 22 29 chr21 37240716 37240853 -7666717 - L2 LINE L2 -616 2698 2563 1605 239 26 70 chr21 37240909 37241440 -7666130 - MLT2B1 LTR ERVL -8 512 5 276 248 0 0 chr21 37242142 37242275 -7665295 + (CA)n Simple_repeat Simple_repeat 1 133 0 219 283 0 0 chr21 37242319 37242418 -7665152 + (CA)n Simple_repeat Simple_repeat 2 100 0 405 225 11 6 chr21 37242476 37242654 -7664916 + (CA)n Simple_repeat Simple_repeat 1 179 0 196 169 17 17 chr21 37242684 37242743 -7664827 + (CA)n Simple_repeat Simple_repeat 1 59 0 2061 123 48 31 chr21 37243048 37243225 -7664345 - THE1B LTR MaLR 0 364 191 2344 92 0 28 chr21 37243225 37243542 -7664028 - AluY SINE Alu -3 308 1 2061 123 48 31 chr21 37243542 37243722 -7663848 - THE1B LTR MaLR -173 191 1 2433 96 0 0 chr21 37245093 37245396 -7662174 + AluSg SINE Alu 1 303 -7 2268 94 3 0 chr21 37245916 37246202 -7661368 + AluSg1 SINE Alu 6 292 -17 1292 245 23 29 chr21 37246266 37246415 -7661155 - MER58B DNA MER1_type -2079 341 193 2132 148 9 92 chr21 37246415 37246880 -7660690 - MSTC LTR MaLR 0 428 3 1292 245 23 29 chr21 37246880 37247073 -7660497 - MER58B DNA MER1_type -2227 193 1 2047 152 0 13 chr21 37247911 37248227 -7659343 + AluSx SINE Alu 1 312 0 2013 153 0 10 chr21 37248652 37248953 -7658617 + AluJo SINE Alu 1 298 -14 291 292 137 24 chr21 37249633 37249962 -7657608 + L1ME4a LINE L1 5755 6120 -1 207 317 169 14 chr21 37251942 37252084 -7655486 + MIR3 SINE MIR 27 190 -18 1088 216 101 23 chr21 37253275 37253622 -7653948 - MLT1C LTR MaLR -12 455 82 833 211 91 22 chr21 37253623 37253855 -7653715 - MLT1C LTR MaLR -219 248 1 62 36 0 0 chr21 37254196 37254279 -7653291 + AT_rich Low_complexity Low_complexity 1 83 0 1951 108 0 18 chr21 37254354 37254677 -7652893 - AluSx SINE Alu 0 318 1 2462 157 19 24 chr21 37254766 37255187 -7652383 - MSTB LTR MaLR 0 426 8 518 269 44 40 chr21 37255928 37256109 -7651461 - L2 LINE L2 -407 2907 2723 1848 138 11 0 chr21 37256109 37256392 -7651178 - AluSx SINE Alu -17 295 10 518 269 44 40 chr21 37256392 37256485 -7651085 - L2 LINE L2 -591 2723 2632 721 225 11 6 chr21 37256712 37256890 -7650680 - MER53 DNA DNA 0 189 11 285 212 45 15 chr21 37256891 37256957 -7650613 - MLT2E LTR ERVL -536 92 25 380 210 159 45 chr21 37256997 37257154 -7650416 - MIR SINE MIR -7 255 81 656 235 217 18 chr21 37257162 37257379 -7650191 - MIR SINE MIR 0 262 3 1163 180 5 5 chr21 37257703 37257914 -7649656 + AluJo SINE Alu 85 295 -17 358 294 40 24 chr21 37257950 37258076 -7649494 - MIR SINE MIR -111 151 24 22 35 0 0 chr21 37259292 37259321 -7648249 + AT_rich Low_complexity Low_complexity 1 29 0 1710 186 54 63 chr21 37260203 37260644 -7646926 + L1MB7 LINE L1 5728 6164 -20 1563 160 0 0 chr21 37260645 37260908 -7646662 - AluJo SINE Alu -15 297 35 793 284 89 45 chr21 37260955 37261526 -7646044 + L2 LINE L2 2695 3294 -19 2243 100 0 0 chr21 37261569 37261878 -7645692 + AluSx SINE Alu 1 309 -3 252 255 60 57 chr21 37262168 37262358 -7645212 - L1MC/D LINE L1 -685 5436 5270 437 237 61 15 chr21 37263053 37263184 -7644386 + L1ME LINE L1 5662 5798 -323 198 0 0 0 chr21 37264116 37264138 -7643432 + (A)n Simple_repeat Simple_repeat 1 22 0 462 306 78 24 chr21 37264549 37264755 -7642815 + MIR SINE MIR 46 262 0 200 200 0 0 chr21 37264775 37264815 -7642755 + (CAT)n Simple_repeat Simple_repeat 3 42 0 798 267 123 27 chr21 37265048 37265422 -7642148 + L2 LINE L2 2231 2640 -674 1536 203 91 37 chr21 37265730 37266159 -7641411 + MLT1C LTR MaLR 6 457 -10 726 126 0 0 chr21 37266694 37266797 -7640773 + AluSg/x SINE Alu 201 303 -9 348 214 9 80 chr21 37267987 37268099 -7639471 - L1MD3 LINE L1 -1 7994 7891 1446 148 44 134 chr21 37268127 37268492 -7639078 + MER44D DNA MER2_type 1 602 -7 281 322 69 15 chr21 37269476 37269678 -7637892 - L1MC4a LINE L1 -1885 5923 5711 2043 198 52 41 chr21 37270455 37270970 -7636600 + Charlie1b DNA MER1_type 3 523 0 227 289 93 41 chr21 37271688 37271882 -7635688 - L1MC4a LINE L1 -708 5462 5259 242 289 19 10 chr21 37272013 37272117 -7635453 - L1P LINE L1 -1057 5089 4985 968 205 88 112 chr21 37272254 37272666 -7634904 + MLT2D LTR ERVL 1 432 -32 309 89 0 0 chr21 37272666 37272711 -7634859 + (CA)n Simple_repeat Simple_repeat 2 46 0 968 205 88 112 chr21 37272711 37272744 -7634826 + MLT2D LTR ERVL 432 464 0 210 160 0 0 chr21 37273561 37273611 -7633959 + (TA)n Simple_repeat Simple_repeat 1 50 0 663 174 158 6 chr21 37273618 37273777 -7633793 + L1MA9 LINE L1 5763 5858 -306 261 0 0 0 chr21 37273777 37273806 -7633764 + (TA)n Simple_repeat Simple_repeat 2 30 0 389 154 0 0 chr21 37273809 37273874 -7633696 - L1M2 LINE L1 -516 5775 5711 482 207 112 41 chr21 37273878 37274047 -7633523 - MLT1B LTR MaLR -209 181 1 325 277 26 59 chr21 37274288 37274441 -7633129 - L1MC4a LINE L1 -856 5290 5143 1891 118 0 0 chr21 37274839 37275110 -7632460 - AluSg SINE Alu -6 304 34 2660 143 42 2 chr21 37275574 37276030 -7631540 - L1MB3 LINE L1 -2 6181 5708 360 0 0 0 chr21 37276517 37276557 -7631013 + (TG)n Simple_repeat Simple_repeat 2 41 0 1616 134 159 29 chr21 37277044 37277358 -7630212 - THE1A LTR MaLR 0 355 1 709 150 11 78 chr21 37277931 37278111 -7629459 - MER53 DNA DNA -1 188 21 4514 162 20 54 chr21 37278112 37278750 -7628820 - L1MB8 LINE L1 -9 6169 5511 1886 73 92 4 chr21 37278750 37279011 -7628559 + AluY SINE Alu 1 284 -27 4514 162 20 54 chr21 37279011 37279026 -7628544 - L1MB8 LINE L1 -667 5511 5497 297 0 0 0 chr21 37279026 37279059 -7628511 + (CA)n Simple_repeat Simple_repeat 2 34 0 4514 162 20 54 chr21 37279059 37279240 -7628330 - L1MB8 LINE L1 -681 5497 5311 2057 131 0 6 chr21 37279240 37279554 -7628016 - AluSx SINE Alu 0 312 1 4514 162 20 54 chr21 37279554 37279798 -7627772 - L1MB8 LINE L1 -867 5311 5124 1823 124 36 0 chr21 37279798 37280110 -7627460 - AluSx SINE Alu 0 322 1 4514 162 20 54 chr21 37280110 37280322 -7627248 - L1MB8 LINE L1 -1054 5124 4906 289 221 37 12 chr21 37281653 37281816 -7625754 + (TA)n Simple_repeat Simple_repeat 2 168 0 354 240 14 63 chr21 37281831 37281953 -7625617 - L1MCa LINE L1 -1339 6983 1966 363 217 133 0 chr21 37281987 37282070 -7625500 - L1MC4 LINE L1 -1339 6703 6610 257 258 50 0 chr21 37282070 37282190 -7625380 + (TA)n Simple_repeat Simple_repeat 1 126 0 1824 185 3 26 chr21 37282200 37282552 -7625018 - MLT2C1 LTR ERVL -48 349 6 1127 212 37 5 chr21 37283343 37283560 -7624010 + MER58A DNA MER1_type 1 224 0 1376 175 32 17 chr21 37286887 37287148 -7620422 - MLT1D LTR MaLR 0 505 250 2241 90 3 3 chr21 37287341 37287641 -7619929 + AluSx SINE Alu 1 300 -12 367 239 33 33 chr21 37287676 37287768 -7619802 - L2 LINE L2 -1 3312 3221 669 126 68 0 chr21 37287769 37287872 -7619698 + LTR40b LTR ERVL 353 462 0 1108 258 63 45 chr21 37288167 37288310 -7619260 + MLT1J2 LTR MaLR 41 180 -270 2283 52 14 7 chr21 37288310 37288601 -7618969 + AluSp SINE Alu 1 293 -20 1108 258 63 45 chr21 37288601 37288856 -7618714 + MLT1J2 LTR MaLR 180 446 -4 22 70 0 0 chr21 37289074 37289117 -7618453 + AT_rich Low_complexity Low_complexity 1 43 0 393 315 30 25 chr21 37289699 37289868 -7617702 - MIR3 SINE MIR -62 146 15 351 150 0 0 chr21 37290014 37290074 -7617496 + (CA)n Simple_repeat Simple_repeat 2 61 0 426 121 0 0 chr21 37290159 37290225 -7617345 + (CA)n Simple_repeat Simple_repeat 2 67 0 1309 189 4 8 chr21 37293275 37293529 -7614041 + AluJo SINE Alu 11 263 -49 21 0 0 0 chr21 37293560 37293581 -7613989 + AT_rich Low_complexity Low_complexity 1 21 0 1309 194 90 11 chr21 37293596 37293874 -7613696 + AluJo SINE Alu 2 301 -1 692 266 34 21 chr21 37293889 37294209 -7613361 + MLT1H1 LTR MaLR 124 476 -79 2335 236 115 57 chr21 37294273 37294541 -7613029 + L1MC5 LINE L1 6633 6884 -1077 1986 143 0 0 chr21 37294541 37294835 -7612735 + AluSx SINE Alu 1 294 -18 2335 236 115 57 chr21 37294835 37295788 -7611782 + L1MC5 LINE L1 6884 7925 -36 283 270 36 9 chr21 37295781 37295892 -7611678 + L1ME4a LINE L1 5813 5926 -195 * 261 234 121 65 chr21 37295910 37296034 -7611536 + L1ME4a LINE L1 5989 6119 -2 404 178 59 20 chr21 37297610 37297711 -7609859 - MER5A DNA MER1_type -76 113 9 856 185 38 155 chr21 37297727 37297831 -7609739 + MER33 DNA MER1_type 1 116 -2469 13493 76 8 1 chr21 37297831 37300378 -7607192 + L1PA7 LINE L1 3584 6141 -13 856 185 38 155 chr21 37300378 37300526 -7607044 + MER33 DNA MER1_type 116 199 -2386 2102 72 25 0 chr21 37300526 37300805 -7606765 - L1PA8 LINE L1 -7 6165 5880 856 185 38 155 chr21 37300805 37300918 -7606652 + MER33 DNA MER1_type 199 324 0 1520 196 122 30 chr21 37301872 37302300 -7605270 + MLT1C LTR MaLR 1 467 0 774 111 4 177 chr21 37302446 37302672 -7604898 + MER53 DNA DNA 2 188 -1 850 224 18 0 chr21 37303041 37303206 -7604364 + MER45A DNA AcHobo 9 176 -2 330 313 117 0 chr21 37304031 37304159 -7603411 + MIR3 SINE MIR 21 163 -45 269 167 69 78 chr21 37304258 37304360 -7603210 - MLT1I LTR MaLR 0 409 322 8847 59 5 0 chr21 37304496 37305562 -7602008 - MER11C LTR ERVK 0 1071 1 296 308 84 9 chr21 37305968 37306075 -7601495 - MER91C DNA MER1_type 0 140 26 3128 166 9 18 chr21 37306695 37307249 -7600321 - L1MB5 LINE L1 0 6174 5626 1072 181 39 0 chr21 37307315 37307520 -7600050 - MER58A DNA MER1_type -9 215 3 199 327 128 68 chr21 37307589 37307855 -7599715 + L3b LINE CR1 1289 1570 -13 323 247 13 26 chr21 37307890 37307967 -7599603 - L2 LINE L2 -2 3270 3195 323 239 0 14 chr21 37307996 37308067 -7599503 - L3 LINE CR1 -116 1461 1392 180 77 0 0 chr21 37308193 37308219 -7599351 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1732 173 0 26 chr21 37308408 37308721 -7598849 + AluJo SINE Alu 1 305 -7 446 310 32 11 chr21 37308750 37308937 -7598633 + MIR SINE MIR 2 192 -70 226 295 135 13 chr21 37309309 37309465 -7598105 - MER112 DNA MER1_type -21 239 65 776 188 0 0 chr21 37309565 37309698 -7597872 + FLAM_C SINE Alu 1 133 0 358 234 39 47 chr21 37309725 37309910 -7597660 - L1MC4 LINE L1 -1339 6983 1977 24 32 0 0 chr21 37310501 37310532 -7597038 + AT_rich Low_complexity Low_complexity 1 31 0 2390 106 0 0 chr21 37310897 37311199 -7596371 + AluSc SINE Alu 1 302 -7 735 173 0 0 chr21 37311199 37311338 -7596232 + GA-rich Low_complexity Low_complexity 1 139 0 1438 226 76 21 chr21 37311416 37311850 -7595720 + Charlie4a DNA MER1_type 20 477 -31 292 299 43 60 chr21 37312157 37312274 -7595296 - MIR SINE MIR -64 144 30 181 273 0 23 chr21 37313961 37314005 -7593565 + MER5A DNA MER1_type 33 75 -114 2465 54 0 0 chr21 37314010 37314290 -7593280 + AluY SINE Alu 23 302 -9 208 268 246 22 chr21 37314376 37314514 -7593056 + MER5B DNA MER1_type 3 185 -4 674 162 51 0 chr21 37314525 37314642 -7592928 + MER5A DNA MER1_type 2 124 -65 249 302 44 110 chr21 37315231 37315549 -7592021 + L2 LINE L2 2965 3261 -11 2353 100 0 3 chr21 37315796 37316097 -7591473 + AluSx SINE Alu 1 300 -12 294 309 108 7 chr21 37316672 37316811 -7590759 - MIR SINE MIR -97 165 13 341 313 30 8 chr21 37317640 37317774 -7589796 - MER5B DNA MER1_type -6 172 36 939 232 111 50 chr21 37317774 37317872 -7589698 + MLT1C LTR MaLR 1 92 -375 3439 95 42 6 chr21 37317872 37318368 -7589202 + MER75 DNA T2_type 1 514 0 939 232 111 50 chr21 37318368 37318664 -7588906 + MLT1C LTR MaLR 92 419 -48 2501 125 35 0 chr21 37318664 37319070 -7588500 - MER1A DNA MER1_type 0 529 70 262 211 0 0 chr21 37319111 37319163 -7588407 + MLT1C LTR MaLR 416 467 0 1594 126 19 0 chr21 37319171 37319433 -7588137 + MLT1B LTR MaLR 124 390 0 445 296 10 96 chr21 37319433 37319494 -7588076 - MIR SINE MIR -48 214 149 1470 161 109 11 chr21 37319494 37319761 -7587809 + AluJo SINE Alu 1 293 -19 445 296 10 96 chr21 37319761 37319898 -7587672 - MIR SINE MIR -113 149 33 1983 80 0 4 chr21 37320420 37320669 -7586901 + AluSq SINE Alu 1 248 -65 219 333 78 8 chr21 37320681 37320810 -7586760 + MIR SINE MIR 111 248 -14 185 302 128 47 chr21 37320831 37320917 -7586653 - MIR3 SINE MIR -110 98 6 2424 97 0 0 chr21 37321406 37321717 -7585853 + AluY SINE Alu 1 311 0 1820 153 9 50 chr21 37321983 37322303 -7585267 + AluJo SINE Alu 6 312 0 1789 79 9 149 chr21 37322318 37322647 -7584923 + AluSx SINE Alu 7 289 -23 1043 225 95 56 chr21 37322663 37323107 -7584463 - Charlie4a DNA MER1_type -42 466 6 189 275 99 44 chr21 37325335 37325426 -7582144 + MIR SINE MIR 163 258 -4 586 229 62 0 chr21 37329157 37329301 -7578269 - L2 LINE L2 0 3313 3161 2523 128 141 0 chr21 37329301 37329740 -7577830 + Charlie3 DNA MER1_type 1 501 -2209 * 3182 94 20 4 chr21 37329734 37330191 -7577379 + Charlie3 DNA MER1_type 2243 2706 -4 480 325 126 29 chr21 37330214 37330534 -7577036 - L2 LINE L2 -196 3117 2772 400 282 141 12 chr21 37330572 37331000 -7576570 - L1ME LINE L1 -4843 1257 812 318 295 99 11 chr21 37331457 37331608 -7575962 - L1ME LINE L1 -5868 251 93 387 0 0 0 chr21 37331674 37331717 -7575853 + (CA)n Simple_repeat Simple_repeat 2 44 0 3026 181 67 59 chr21 37331725 37331961 -7575609 + LTR48 LTR ERV1 1 234 -553 2164 120 17 0 chr21 37331961 37332253 -7575317 + AluSx SINE Alu 1 297 -15 3026 181 67 59 chr21 37332253 37332797 -7574773 + LTR48 LTR ERV1 234 787 0 608 201 32 39 chr21 37333008 37333162 -7574408 - L2 LINE L2 -746 2568 2416 223 61 0 30 chr21 37333529 37333562 -7574008 + (GGAGAA)n Simple_repeat Simple_repeat 6 37 0 964 136 6 11 chr21 37333572 37333593 -7573977 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 964 136 6 11 chr21 37333593 37333770 -7573800 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 453 243 7 56 chr21 37334017 37334161 -7573409 + MER103 DNA DNA 17 153 -13 1592 196 18 15 chr21 37334238 37334424 -7573146 + MER58B DNA MER1_type 5 194 -2226 1243 204 182 31 chr21 37334424 37334748 -7572822 - MLT1A2 LTR MaLR -1 373 1 1592 196 18 15 chr21 37334748 37334897 -7572673 + MER58B DNA MER1_type 194 341 0 1456 242 82 76 chr21 37335522 37336116 -7571454 - MER115 DNA AcHobo 0 693 96 337 255 163 25 chr21 37338305 37338544 -7569026 + MLT1J2 LTR MaLR 40 311 -139 312 284 0 20 chr21 37339305 37339407 -7568163 + MLT1I LTR MaLR 83 182 -227 278 289 0 2 chr21 37339626 37339727 -7567843 + MLT1L LTR MaLR 489 615 0 400 284 11 0 chr21 37339728 37339823 -7567747 - MIR SINE MIR -111 151 56 450 295 49 16 chr21 37339834 37340017 -7567553 + MER5A DNA MER1_type 1 189 0 232 217 85 54 chr21 37340838 37340967 -7566603 + L1M4 LINE L1 4396 4528 -1618 * 364 240 40 7 chr21 37340964 37341114 -7566456 + L1M4 LINE L1 5175 5329 -817 1337 188 79 0 chr21 37341116 37341252 -7566318 + L1MA10 LINE L1 6017 6141 -193 201 74 0 0 chr21 37341252 37341279 -7566291 + (CA)n Simple_repeat Simple_repeat 2 28 0 1337 188 79 0 chr21 37341279 37341434 -7566136 + L1MA10 LINE L1 6141 6331 -3 22 0 0 0 chr21 37342136 37342158 -7565412 + AT_rich Low_complexity Low_complexity 1 22 0 563 184 92 0 chr21 37342571 37342680 -7564890 + MER63 DNA MER1_type 1 745 -91 303 327 55 23 chr21 37343057 37343226 -7564344 + L3 LINE CR1 1207 1386 -191 2154 130 3 0 chr21 37343226 37343525 -7564045 - AluSx SINE Alu -12 300 1 303 327 55 23 chr21 37343525 37343572 -7563998 + L3 LINE CR1 1386 1430 -147 342 246 110 52 chr21 37343628 37343784 -7563786 - MIR SINE MIR -57 205 37 1955 163 52 38 chr21 37345848 37346248 -7561322 + MLT2D LTR ERVL 1 406 -8 301 336 32 24 chr21 37346268 37346393 -7561177 + L2 LINE L2 3142 3267 -5 2529 149 26 5 chr21 37347591 37348006 -7559564 - MSTA LTR MaLR 0 428 5 2450 78 0 0 chr21 37348911 37349206 -7558364 + AluSx SINE Alu 5 299 -13 1310 225 108 37 chr21 37349539 37349975 -7557595 - MLT1C LTR MaLR 0 467 1 355 404 40 13 chr21 37349975 37350200 -7557370 + HAL1b LINE L1 387 617 -731 14835 170 47 6 chr21 37350330 37352318 -7555252 + L1M2 LINE L1 6 2169 -4679 2166 117 0 17 chr21 37352318 37352618 -7554952 + AluSg1 SINE Alu 1 295 -14 14835 170 47 6 chr21 37352618 37353739 -7553831 + L1M2 LINE L1 2169 3243 -3605 201 121 0 0 chr21 37354571 37354604 -7552966 + (TG)n Simple_repeat Simple_repeat 1 33 0 256 193 37 28 chr21 37354808 37354917 -7552653 + (TA)n Simple_repeat Simple_repeat 2 111 0 285 212 22 22 chr21 37355178 37355315 -7552255 + (CA)n Simple_repeat Simple_repeat 2 138 0 336 179 30 15 chr21 37355334 37355468 -7552102 + (CA)n Simple_repeat Simple_repeat 1 136 0 366 262 33 8 chr21 37355868 37355990 -7551580 + L1ME LINE L1 5545 5669 -493 896 238 29 0 chr21 37356178 37356384 -7551186 + MER20 DNA MER1_type 1 212 -7 188 35 35 0 chr21 37356983 37357012 -7550558 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5384 162 23 4 chr21 37358096 37359373 -7548197 - L1MB3 LINE L1 -2 6181 4882 255 358 24 29 chr21 37359371 37359617 -7547953 - L1MC/D LINE L1 -1944 5864 5620 * 699 284 57 64 chr21 37360317 37360722 -7546848 - MLT1J LTR MaLR -6 505 104 1398 239 141 49 chr21 37360734 37361266 -7546304 - MLT1E LTR MaLR 0 593 13 254 308 16 39 chr21 37361442 37361624 -7545946 - L1MC/D LINE L1 -933 5213 5036 189 0 0 0 chr21 37362196 37362217 -7545353 + (A)n Simple_repeat Simple_repeat 1 21 0 360 248 0 0 chr21 37363907 37364056 -7543514 + (CA)n Simple_repeat Simple_repeat 2 150 0 229 276 0 17 chr21 37364099 37364280 -7543290 + (CA)n Simple_repeat Simple_repeat 2 179 0 1942 165 61 65 chr21 37364316 37364777 -7542793 - LTR2B LTR ERV1 0 490 32 219 146 0 0 chr21 37364796 37364837 -7542733 + (CA)n Simple_repeat Simple_repeat 2 42 0 399 297 143 42 chr21 37364837 37365271 -7542299 + MLT1L LTR MaLR 46 523 -92 2127 147 12 3 chr21 37365290 37365636 -7541934 + L1MC1 LINE L1 5801 6149 -184 477 165 24 0 chr21 37365633 37365718 -7541852 + L1MC1 LINE L1 6063 6149 -184 * 1636 131 48 0 chr21 37365718 37365967 -7541603 + L1MC1 LINE L1 6063 6326 -7 243 88 0 0 chr21 37365976 37366010 -7541560 + (TA)n Simple_repeat Simple_repeat 2 35 0 859 150 0 0 chr21 37366555 37366688 -7540882 - FLAM_C SINE Alu 0 133 1 2593 49 3 0 chr21 37368270 37368576 -7538994 + AluY SINE Alu 1 307 -4 2005 118 29 0 chr21 37368686 37368985 -7538585 - AluSx SINE Alu 0 312 5 255 297 99 0 chr21 37370015 37370106 -7537464 + MIR SINE MIR 52 151 -111 635 260 108 52 chr21 37370161 37370411 -7537159 + MLT1J2 LTR MaLR 168 431 -19 677 184 113 43 chr21 37370659 37370844 -7536726 + MER3 DNA MER1_type 12 209 0 246 191 0 0 chr21 37371752 37371799 -7535771 - MLT1B LTR MaLR -99 291 245 2029 129 164 13 chr21 37371800 37372172 -7535398 + MSTA LTR MaLR 1 428 0 1364 94 0 11 chr21 37372175 37372366 -7535204 + MSTA-int LTR MaLR 3 191 -1389 1997 121 142 18 chr21 37372366 37372746 -7534824 + MSTA LTR MaLR 1 427 -1 1006 167 80 46 chr21 37372746 37372985 -7534585 - MLT1B LTR MaLR -143 247 1 367 303 33 0 chr21 37373774 37373932 -7533638 + MLT1J2 LTR MaLR 1 166 -281 411 247 214 42 chr21 37373998 37374353 -7533217 + MLT1H LTR MaLR 124 540 -15 710 246 115 49 chr21 37374358 37374602 -7532968 + MLT1J2 LTR MaLR 168 427 -23 204 232 148 92 chr21 37374769 37374911 -7532659 - L2 LINE L2 0 3313 3164 271 372 0 18 chr21 37374915 37375028 -7532542 + L2 LINE L2 3154 3264 -8 358 275 43 80 chr21 37375106 37375392 -7532178 - L2 LINE L2 -247 3066 2791 6041 217 62 31 chr21 37375415 37376407 -7531163 - L1ME1 LINE L1 -5 6161 5201 2041 166 8 3 chr21 37376407 37376762 -7530808 - L1PA16 LINE L1 -6 6160 5804 6041 217 62 31 chr21 37376762 37376863 -7530707 - L1ME1 LINE L1 -965 5201 5105 2177 97 4 0 chr21 37376863 37377184 -7530386 - AluSx SINE Alu 0 326 5 6041 217 62 31 chr21 37377184 37378446 -7529124 - L1ME1 LINE L1 -1061 5105 3715 1768 141 103 29 chr21 37378446 37378786 -7528784 - MLT1A1 LTR MaLR 0 365 1 6041 217 62 31 chr21 37378786 37379078 -7528492 - L1ME1 LINE L1 -2451 3715 3433 2286 89 10 0 chr21 37379082 37379374 -7528196 - AluSg SINE Alu -15 295 1 1858 158 42 24 chr21 37379393 37379729 -7527841 + MLT-int LTR MaLR 1382 1723 -12 2692 219 80 13 chr21 37379729 37380358 -7527212 - MER21B LTR ERV1 -172 691 21 412 238 0 12 chr21 37380382 37380462 -7527108 - MER21B LTR ERV1 -773 90 12 318 302 101 65 chr21 37380958 37381236 -7526334 - MLT1K LTR MaLR -177 411 124 1236 181 111 59 chr21 37381339 37381710 -7525860 - MLT1B LTR MaLR 0 390 1 1688 176 33 3 chr21 37382077 37382378 -7525192 + AluJb SINE Alu 1 310 -2 323 261 23 0 chr21 37382769 37382857 -7524713 + MER82 DNA MER2_type 3 92 -561 277 305 86 33 chr21 37382906 37383057 -7524513 - MIR SINE MIR -73 189 31 852 230 21 16 chr21 37383096 37383287 -7524283 + MER82 DNA MER2_type 444 635 -18 2378 124 103 0 chr21 37383437 37383824 -7523746 + MSTC LTR MaLR 1 427 -1 2108 138 117 25 chr21 37384093 37384485 -7523085 - MSTA LTR MaLR 0 428 1 1093 156 17 0 chr21 37385840 37386019 -7521551 - AluJo SINE Alu -9 303 122 864 28 0 49 chr21 37386034 37386176 -7521394 + (TCTCCC)n Simple_repeat Simple_repeat 3 137 0 6131 76 17 53 chr21 37386176 37387703 -7519867 + SVA Other Other 72 1386 0 219 69 0 0 chr21 37387900 37387929 -7519641 + (A)n Simple_repeat Simple_repeat 1 29 0 2186 114 0 14 chr21 37387934 37388060 -7519510 + AluSx SINE Alu 11 137 -175 2446 75 3 7 chr21 37388060 37388366 -7519204 + AluSp SINE Alu 1 305 -8 2186 114 0 14 chr21 37388366 37388536 -7519034 + AluSx SINE Alu 137 303 -9 1551 229 109 42 chr21 37390600 37391106 -7516464 + MER34 LTR ERV1 3 542 0 214 259 17 0 chr21 37391963 37392021 -7515549 + CT-rich Low_complexity Low_complexity 1 59 0 1388 169 48 8 chr21 37392057 37392305 -7515265 + AluJo SINE Alu 11 268 -44 21 0 0 0 chr21 37392314 37392335 -7515235 + AT_rich Low_complexity Low_complexity 1 21 0 1070 169 154 125 chr21 37392404 37392748 -7514822 - MLT1A1 LTR MaLR -40 356 3 1000 265 185 2 chr21 37392924 37393438 -7514132 + L2 LINE L2 1913 2520 -794 1181 189 187 84 chr21 37393489 37393907 -7513663 + LTR40b LTR ERVL 1 461 -1 287 264 163 92 chr21 37394177 37394503 -7513067 + MLT1-int LTR MaLR 1023 1371 0 449 302 103 67 chr21 37394606 37394947 -7512623 + MLT1H LTR MaLR 195 547 -2 13162 168 53 19 chr21 37394990 37398833 -7508737 - L1MA4A LINE L1 0 6303 2321 2430 172 28 35 chr21 37398854 37399318 -7508252 + MLT2B3 LTR ERVL 38 498 -56 2384 141 132 7 chr21 37399332 37399771 -7507799 - Tigger3b DNA MER2_type 0 1232 739 1846 182 0 0 chr21 37399956 37400247 -7507323 + AluJb SINE Alu 2 292 -20 853 132 0 52 chr21 37400362 37400498 -7507072 + FLAM_C SINE Alu 6 134 -9 4008 127 78 3 chr21 37401874 37402569 -7505001 - Tigger3b DNA MER2_type -483 748 2 536 190 0 10 chr21 37403054 37403154 -7504416 - FLAM_A SINE Alu -43 99 1 361 310 53 18 chr21 37403666 37403837 -7503733 - MIR SINE MIR -84 178 2 814 189 7 0 chr21 37404661 37404837 -7502733 + FRAM SINE Alu 1 41 0 218 213 176 65 chr21 37405841 37405949 -7501621 - L2 LINE L2 -14 3258 3139 235 273 73 27 chr21 37406103 37406213 -7501357 - L2 LINE L2 -9 3304 3190 22 0 0 0 chr21 37406560 37406582 -7500988 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr21 37406613 37406641 -7500929 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr21 37408157 37408195 -7499375 + AT_rich Low_complexity Low_complexity 1 38 0 180 281 195 31 chr21 37408305 37408383 -7499187 + MIR SINE MIR 43 107 -155 2481 145 31 7 chr21 37408383 37408798 -7498772 + MSTB LTR MaLR 1 425 -1 180 281 195 31 chr21 37408798 37408847 -7498723 + MIR SINE MIR 107 191 -71 246 304 33 22 chr21 37408995 37409087 -7498483 + MIR3 SINE MIR 93 185 -23 335 243 79 53 chr21 37410024 37410176 -7497394 - MIR3 SINE MIR -14 194 39 1735 163 3 17 chr21 37410646 37410940 -7496630 - AluJo SINE Alu -22 290 1 750 163 0 15 chr21 37410978 37411113 -7496457 + FLAM_C SINE Alu 1 133 0 402 260 45 17 chr21 37411669 37411846 -7495724 + L1MC5 LINE L1 7261 7442 -519 355 301 80 50 chr21 37411902 37412164 -7495406 + L1MC5 LINE L1 7532 7801 -160 303 333 78 72 chr21 37412671 37413157 -7494413 + L1M4c LINE L1 526 1014 -5835 708 138 0 0 chr21 37413191 37413307 -7494263 - FLAM_C SINE Alu -17 116 1 243 0 0 0 chr21 37414800 37414827 -7492743 + (A)n Simple_repeat Simple_repeat 1 27 0 211 361 75 23 chr21 37417339 37417472 -7490098 - L2 LINE L2 -155 3117 2978 1453 150 40 0 chr21 37427060 37427307 -7480263 - Tigger3(Golem) DNA MER2_type -2 3027 2771 496 202 10 29 chr21 37427304 37427408 -7480162 - Tigger3(Golem) DNA MER2_type -2887 142 41 * 442 286 60 32 chr21 37427673 37427858 -7479712 + MIR SINE MIR 70 259 -3 2202 91 0 7 chr21 37429272 37429557 -7478013 - AluSq SINE Alu -30 283 1 1996 125 7 0 chr21 37430208 37430497 -7477073 + AluSx SINE Alu 1 291 -21 220 407 53 0 chr21 37431689 37431802 -7475768 + L2 LINE L2 3134 3252 -20 1234 209 56 8 chr21 37432690 37432939 -7474631 + AluJo SINE Alu 18 278 -34 222 37 0 0 chr21 37432940 37432967 -7474603 + (T)n Simple_repeat Simple_repeat 1 27 0 1997 47 0 4 chr21 37432976 37433211 -7474359 - AluY SINE Alu -77 234 1 1012 229 13 17 chr21 37433374 37433676 -7473894 + AluSq SINE Alu 1 301 -2 273 294 14 34 chr21 37433688 37433834 -7473736 + L1M4c LINE L1 2525 2667 -4183 1677 161 29 32 chr21 37434142 37434453 -7473117 - MER1B DNA MER1_type -1 338 29 1607 180 10 20 chr21 37434696 37434991 -7472579 + AluJo SINE Alu 1 292 -20 2017 137 7 3 chr21 37434994 37435300 -7472270 + AluSx SINE Alu 1 307 -5 1864 115 67 0 chr21 37435302 37435571 -7471999 + AluSx SINE Alu 1 287 -25 2031 131 27 0 chr21 37436658 37436956 -7470614 + AluSx SINE Alu 2 307 -5 300 27 0 0 chr21 37436956 37436993 -7470577 + (CA)n Simple_repeat Simple_repeat 2 38 0 2732 198 79 14 chr21 37437001 37437646 -7469924 + L1MB4 LINE L1 5486 6172 -8 308 162 14 40 chr21 37437649 37437723 -7469847 + L1MB8 LINE L1 6078 6149 -29 1547 117 15 73 chr21 37438080 37438353 -7469217 - AluSx SINE Alu -35 277 21 27 0 0 0 chr21 37438793 37438820 -7468750 + AT_rich Low_complexity Low_complexity 1 27 0 257 182 114 34 chr21 37438831 37438919 -7468651 + LTR45B LTR ERV1 343 437 -52 192 77 0 0 chr21 37438941 37438967 -7468603 + (A)n Simple_repeat Simple_repeat 1 26 0 1537 214 128 13 chr21 37440761 37441214 -7466356 + MLT1D LTR MaLR 1 505 0 672 188 174 0 chr21 37442571 37442709 -7464861 - AluJo SINE Alu -150 162 1 204 40 0 0 chr21 37443418 37443443 -7464127 + (TA)n Simple_repeat Simple_repeat 2 26 0 904 230 111 45 chr21 37443878 37444257 -7463313 + L1MD3 LINE L1 7582 7985 -10 1678 120 83 47 chr21 37444374 37444674 -7462896 - AluSq SINE Alu -1 312 2 1684 167 7 20 chr21 37445229 37445529 -7462041 + AluJb SINE Alu 14 309 -3 22 0 0 0 chr21 37445812 37445834 -7461736 + AT_rich Low_complexity Low_complexity 1 22 0 198 324 68 27 chr21 37446045 37446119 -7461451 + L3 LINE CR1 1443 1519 -58 1444 104 54 0 chr21 37446291 37446513 -7461057 - L1PA13 LINE L1 -3 6160 5927 600 27 0 0 chr21 37446515 37446589 -7460981 + (TA)n Simple_repeat Simple_repeat 2 75 0 2169 112 0 19 chr21 37446589 37446901 -7460669 - AluSx SINE Alu -6 306 1 30 0 0 0 chr21 37448507 37448537 -7459033 + AT_rich Low_complexity Low_complexity 1 30 0 2123 124 3 0 chr21 37448646 37448945 -7458625 + AluSx SINE Alu 4 303 -9 204 310 46 46 chr21 37449529 37449616 -7457954 + MIR SINE MIR 13 99 -163 248 135 0 0 chr21 37449660 37449697 -7457873 - Alu SINE Alu -17 116 80 1303 260 117 22 chr21 37449697 37450277 -7457293 + L1MEc LINE L1 410 1044 -5352 26 30 0 0 chr21 37450340 37450373 -7457197 + AT_rich Low_complexity Low_complexity 1 33 0 2045 143 10 0 chr21 37450382 37450682 -7456888 + AluSx SINE Alu 3 305 -7 182 410 42 0 chr21 37450735 37450830 -7456740 + L2 LINE L2 3170 3268 -4 1682 178 136 26 chr21 37451128 37451158 -7456412 + L1M4 LINE L1 5318 5343 -835 1323 159 126 11 chr21 37451158 37451435 -7456135 + AluSg1 SINE Alu 1 309 0 1682 178 136 26 chr21 37451435 37451860 -7455710 + L1M4 LINE L1 5343 5823 -355 1666 225 327 15 chr21 37451860 37452814 -7454756 + L1MD3 LINE L1 6742 7993 -2 2209 100 7 7 chr21 37453353 37453654 -7453916 - AluSx SINE Alu -11 301 1 24 67 0 0 chr21 37453866 37453911 -7453659 + AT_rich Low_complexity Low_complexity 1 45 0 1455 175 0 96 chr21 37456345 37456688 -7450882 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr21 37457111 37457133 -7450437 + AT_rich Low_complexity Low_complexity 1 22 0 2025 118 0 0 chr21 37457512 37457783 -7449787 + AluSg SINE Alu 1 271 -39 593 165 101 155 chr21 37458147 37458502 -7449068 - MER33 DNA MER1_type 0 324 1 1589 184 7 24 chr21 37459247 37459541 -7448029 - AluJo SINE Alu -21 291 3 358 289 41 25 chr21 37459649 37459770 -7447800 - L2 LINE L2 -4 3309 3187 2815 198 68 8 chr21 37459900 37460507 -7447063 + MER82 DNA MER2_type 11 653 0 25 0 0 0 chr21 37460685 37460710 -7446860 + AT_rich Low_complexity Low_complexity 1 25 0 273 322 82 41 chr21 37460908 37461178 -7446392 - L1ME LINE L1 -310 5811 5531 233 181 0 149 chr21 37461396 37461490 -7446080 - L1ME LINE L1 -509 5612 5533 1410 224 146 47 chr21 37462392 37462905 -7444665 + MLT1F1 LTR MaLR 4 567 0 2121 113 0 0 chr21 37463242 37463544 -7444026 + AluSx SINE Alu 1 302 0 261 394 10 0 chr21 37463685 37463789 -7443781 - L2 LINE L2 -52 3220 3116 1917 122 25 0 chr21 37464473 37464778 -7442792 + AluSx SINE Alu 1 312 0 932 188 50 5 chr21 37467129 37467331 -7440239 + L1MB2 LINE L1 5957 6167 -4 219 301 27 14 chr21 37467354 37467427 -7440143 - L2 LINE L2 -604 2710 2637 185 349 48 16 chr21 37467672 37467798 -7439772 - L3 LINE CR1 -532 1045 916 2489 204 71 16 chr21 37468380 37469268 -7438302 - L1MC/D LINE L1 -756 5390 4544 * 3296 140 40 21 chr21 37469265 37469842 -7437728 + L1MC1 LINE L1 5503 6090 -243 1085 176 0 0 chr21 37469844 37470014 -7437556 + FRAM SINE Alu 1 162 -14 781 249 95 0 chr21 37470037 37470290 -7437280 + L1MC4a LINE L1 5656 5932 -1876 372 109 0 0 chr21 37470405 37470460 -7437110 - Alu SINE Alu -2 298 244 342 0 0 0 chr21 37470470 37470508 -7437062 + (A)n Simple_repeat Simple_repeat 1 38 0 7833 141 60 16 chr21 37470665 37472059 -7435511 + Tigger1 DNA MER2_type 1 1456 -962 787 155 71 30 chr21 37472059 37472227 -7435343 + L1MC4 LINE L1 7322 7496 -546 724 222 178 26 chr21 37472252 37472441 -7435129 + L1MC4 LINE L1 7560 7719 -323 1659 162 7 30 chr21 37472441 37472744 -7434826 - AluJb SINE Alu -16 296 1 724 222 178 26 chr21 37472744 37472945 -7434625 + L1MC4 LINE L1 7719 8042 0 183 211 0 0 chr21 37472952 37472990 -7434580 + L2 LINE L2 3267 3304 -9 2198 80 38 3 chr21 37473067 37473356 -7434214 - AluY SINE Alu -12 299 1 551 228 49 43 chr21 37473358 37473542 -7434028 + MIR SINE MIR 68 252 -10 216 0 0 0 chr21 37473914 37473938 -7433632 + (TA)n Simple_repeat Simple_repeat 2 25 0 259 98 0 0 chr21 37474012 37474053 -7433517 + Alu SINE Alu 255 295 -7 992 148 6 6 chr21 37474086 37474248 -7433322 + FRAM SINE Alu 1 159 -17 342 329 35 7 chr21 37474288 37474431 -7433139 - MIR SINE MIR -26 236 90 2088 125 0 10 chr21 37474582 37474894 -7432676 - AluSx SINE Alu -3 309 1 3253 156 88 54 chr21 37474993 37475793 -7431777 + L1MB7 LINE L1 5077 5848 -336 2147 87 14 3 chr21 37475793 37476082 -7431488 + AluSc SINE Alu 1 292 -17 3253 156 88 54 chr21 37476082 37476272 -7431298 + L1MB7 LINE L1 5848 6104 -80 882 213 97 5 chr21 37476272 37476488 -7431082 - MER46A DNA MER2_type 0 236 1 3253 156 88 54 chr21 37476488 37476508 -7431062 + L1MB7 LINE L1 6104 6122 -62 4730 130 17 31 chr21 37477222 37477993 -7429577 + L1PA15 LINE L1 5385 6144 -21 378 0 0 0 chr21 37478555 37478597 -7428973 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr21 37479670 37479699 -7427871 + AT_rich Low_complexity Low_complexity 1 29 0 1990 99 67 3 chr21 37480624 37480906 -7426664 + AluSq SINE Alu 1 300 -13 563 296 60 82 chr21 37481310 37481628 -7425942 + MLT1J LTR MaLR 1 311 -200 2219 99 13 0 chr21 37481648 37481952 -7425618 + AluSq SINE Alu 1 308 -5 296 56 0 0 chr21 37482571 37482607 -7424963 - U2 snRNA snRNA -152 36 1 2313 75 17 0 chr21 37482625 37482919 -7424651 + AluSp SINE Alu 1 299 -14 1008 225 87 96 chr21 37482919 37483515 -7424055 + L1MC5 LINE L1 6713 7303 -658 600 231 15 39 chr21 37483539 37483742 -7423828 + L1MC5 LINE L1 7603 7800 -161 2348 82 0 3 chr21 37483769 37484073 -7423497 + AluSq SINE Alu 1 303 -10 745 180 0 8 chr21 37484631 37484759 -7422811 - FLAM_C SINE Alu -16 127 1 469 212 92 78 chr21 37485722 37485939 -7421631 + L1MC4 LINE L1 5681 5900 -1908 1255 245 87 72 chr21 37485948 37486547 -7421023 + L1MC4 LINE L1 7406 8013 -29 2057 83 0 32 chr21 37487941 37488219 -7419351 - AluY SINE Alu -23 288 20 1719 134 83 21 chr21 37488219 37488509 -7419061 + AluSq SINE Alu 5 312 -1 852 161 0 28 chr21 37488937 37489080 -7418490 - FLAM_C SINE Alu -4 139 1 1218 274 20 11 chr21 37489224 37489575 -7417995 + L1MEc LINE L1 81 434 -5962 2041 126 0 14 chr21 37489579 37489873 -7417697 + AluSx SINE Alu 1 290 -22 900 242 45 19 chr21 37490011 37490314 -7417256 - Charlie1a DNA MER1_type -1061 394 1 932 243 97 24 chr21 37490314 37490870 -7416700 + L1MEc LINE L1 2057 2618 -3597 1318 221 33 46 chr21 37490875 37491075 -7416495 + L1ME1 LINE L1 5713 5907 -259 2208 95 0 0 chr21 37491075 37491359 -7416211 + AluSc SINE Alu 1 284 -25 1318 221 33 46 chr21 37491359 37491551 -7416019 + L1ME1 LINE L1 5907 6100 -66 1214 138 56 0 chr21 37491559 37491755 -7415815 + AluJb SINE Alu 86 292 -20 266 164 52 0 chr21 37491766 37491833 -7415737 + L1ME1 LINE L1 6104 6178 0 1942 231 155 46 chr21 37492004 37493047 -7414523 + L1MC4 LINE L1 6846 8002 -40 22 0 0 0 chr21 37493066 37493088 -7414482 + AT_rich Low_complexity Low_complexity 1 22 0 1810 152 10 35 chr21 37493782 37494092 -7413478 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr21 37494943 37494966 -7412604 + AT_rich Low_complexity Low_complexity 1 23 0 2328 76 0 13 chr21 37495954 37496257 -7411313 + AluY SINE Alu 1 299 -12 302 221 88 62 chr21 37496284 37496397 -7411173 + L1ME LINE L1 5565 5680 -441 314 126 0 116 chr21 37496581 37496676 -7410894 + L1PA11 LINE L1 6088 6171 -3 353 166 19 14 chr21 37496717 37496803 -7410767 + L1MC4a LINE L1 7127 7198 -610 1892 102 4 8 chr21 37496836 37497101 -7410469 + AluSq SINE Alu 39 302 -11 801 216 54 76 chr21 37497103 37497345 -7410225 + L1MC4 LINE L1 7301 7542 -266 2411 89 0 6 chr21 37497345 37497658 -7409912 + AluY SINE Alu 1 311 0 801 216 54 76 chr21 37497658 37497823 -7409747 + L1MC4 LINE L1 7542 7709 -99 25 0 0 0 chr21 37497881 37497906 -7409664 + AT_rich Low_complexity Low_complexity 1 25 0 713 156 57 0 chr21 37497981 37498103 -7409467 - FLAM_C SINE Alu -4 129 1 28 102 0 0 chr21 37498146 37498244 -7409326 + AT_rich Low_complexity Low_complexity 1 98 0 24 0 0 0 chr21 37498778 37498802 -7408768 + AT_rich Low_complexity Low_complexity 1 24 0 2027 130 3 3 chr21 37499653 37499946 -7407624 + AluSg SINE Alu 1 293 -17 2390 80 0 26 chr21 37500048 37500360 -7407210 + AluY SINE Alu 1 304 -7 1742 146 0 4 chr21 37500396 37500650 -7406920 + AluSq SINE Alu 1 253 -60 1951 65 4 23 chr21 37500793 37500874 -7406696 + AluY SINE Alu 1 82 -229 446 112 22 34 chr21 37500874 37500963 -7406607 + L1PA8 LINE L1 6085 6172 0 1951 65 4 23 chr21 37500963 37501142 -7406428 + AluY SINE Alu 82 256 -55 1088 125 0 25 chr21 37501152 37501312 -7406258 - AluSx SINE Alu -156 156 1 24 32 0 0 chr21 37501704 37501735 -7405835 + AT_rich Low_complexity Low_complexity 1 31 0 1083 165 51 90 chr21 37501894 37502149 -7405421 + AluJb SINE Alu 33 277 -35 22 0 0 0 chr21 37502154 37502176 -7405394 + AT_rich Low_complexity Low_complexity 1 22 0 278 128 43 0 chr21 37502285 37502332 -7405238 - Alu SINE Alu -11 289 241 246 95 0 0 chr21 37502689 37502731 -7404839 + (GA)n Simple_repeat Simple_repeat 1 42 0 2185 94 0 18 chr21 37503168 37503454 -7404116 + AluSg SINE Alu 9 289 -21 891 136 86 20 chr21 37503947 37504145 -7403425 + L1MA7 LINE L1 6081 6291 0 2097 112 3 0 chr21 37504151 37504458 -7403112 + AluSp SINE Alu 1 308 0 2068 114 0 7 chr21 37505974 37506254 -7401316 - AluSx SINE Alu -22 290 13 1673 150 14 18 chr21 37506270 37506550 -7401020 - AluJo SINE Alu -33 279 1 622 174 0 9 chr21 37507311 37507426 -7400144 - FLAM_A SINE Alu -19 123 10 648 201 186 11 chr21 37507493 37507757 -7399813 - Charlie5 DNA MER1_type -53 2559 2250 2513 93 0 0 chr21 37507757 37508069 -7399501 + AluSx SINE Alu 1 312 0 623 180 0 31 chr21 37508096 37508234 -7399336 - MER3 DNA MER1_type -51 158 38 811 176 0 0 chr21 37509815 37509946 -7397624 + FLAM_C SINE Alu 3 133 0 1633 121 0 130 chr21 37509950 37510281 -7397289 + AluSx SINE Alu 3 290 -12 238 180 0 0 chr21 37510281 37510331 -7397239 + L1MC4 LINE L1 6653 6702 -1340 600 240 0 0 chr21 37510332 37510511 -7397059 + (TA)n Simple_repeat Simple_repeat 1 179 0 372 82 20 0 chr21 37510515 37510564 -7397006 + AluSp SINE Alu 122 171 -132 585 161 0 0 chr21 37510564 37510657 -7396913 + AluSg/x SINE Alu 201 293 -16 319 22 0 0 chr21 37510917 37510962 -7396608 + MER41A LTR ERV1 424 468 -86 24 0 0 0 chr21 37511004 37511028 -7396542 + AT_rich Low_complexity Low_complexity 1 24 0 2377 96 0 3 chr21 37511076 37511377 -7396193 + AluSq SINE Alu 1 300 -13 395 302 13 62 chr21 37511637 37511945 -7395625 - L1M4 LINE L1 -1520 4626 4334 1544 199 7 4 chr21 37512597 37512878 -7394692 + AluJo SINE Alu 1 282 -30 2224 123 34 4 chr21 37512892 37513384 -7394186 - L1M2 LINE L1 -711 5589 5090 3128 175 38 29 chr21 37513384 37514024 -7393546 + L1MA6 LINE L1 5639 6300 0 1072 164 9 84 chr21 37514041 37514267 -7393303 + AluJo SINE Alu 1 209 -103 204 40 0 0 chr21 37514272 37514297 -7393273 + (A)n Simple_repeat Simple_repeat 1 25 0 509 89 0 170 chr21 37514384 37514417 -7393153 - L1MB5 LINE L1 -17 6157 6120 2391 66 0 17 chr21 37514417 37514718 -7392852 - AluY SINE Alu -15 296 1 509 89 0 170 chr21 37514718 37514796 -7392774 - L1MB5 LINE L1 -54 6120 6065 2202 106 0 3 chr21 37514921 37515214 -7392356 - AluSg SINE Alu -18 292 1 867 262 107 30 chr21 37515289 37515793 -7391777 - L1MC4 LINE L1 -2 8040 7498 489 260 146 18 chr21 37515944 37516286 -7391284 - L1M4 LINE L1 -2780 3366 2981 1790 235 63 44 chr21 37516291 37516815 -7390755 - MLT1F LTR MaLR -6 536 3 614 201 77 64 chr21 37516824 37516934 -7390636 - L1M4 LINE L1 -3171 2975 2868 2432 118 72 36 chr21 37516934 37517351 -7390219 - Tigger2a DNA MER2_type -1 433 2 614 201 77 64 chr21 37517351 37517474 -7390096 - L1M4 LINE L1 -3278 2868 2739 262 329 28 7 chr21 37517990 37518133 -7389437 - HAL1 LINE L1 -858 1649 1504 2582 50 0 3 chr21 37518143 37518443 -7389127 + AluY SINE Alu 1 299 -12 2336 90 0 7 chr21 37518608 37518909 -7388661 + AluY SINE Alu 1 299 -12 1156 213 106 4 chr21 37519255 37519528 -7388042 + AluJo SINE Alu 6 306 -6 240 278 83 69 chr21 37519847 37519991 -7387579 + LTR35 LTR ERV1 1 146 -472 324 253 46 0 chr21 37520090 37520177 -7387393 + LTR58 LTR ERV1 350 440 -239 1417 171 24 37 chr21 37520347 37520645 -7386925 - AluJb SINE Alu -10 302 9 316 279 25 0 chr21 37520669 37520748 -7386822 + LTR35 LTR ERV1 524 604 -14 326 172 54 43 chr21 37520766 37520859 -7386711 + L1MC5 LINE L1 7171 7264 -697 518 181 71 24 chr21 37520887 37521014 -7386556 + MER5A DNA MER1_type 57 189 0 563 254 143 82 chr21 37521014 37521565 -7386005 + L1MC5 LINE L1 7330 7914 -47 2276 97 7 0 chr21 37521618 37521908 -7385662 + AluSx SINE Alu 6 297 -15 2278 91 10 3 chr21 37522776 37523072 -7384498 + AluY SINE Alu 1 298 -13 2666 48 0 3 chr21 37523576 37523887 -7383683 - AluY SINE Alu -1 310 1 418 234 81 8 chr21 37523978 37524102 -7383468 + MER5A DNA MER1_type 44 176 -13 33 56 0 0 chr21 37524475 37524529 -7383041 + AT_rich Low_complexity Low_complexity 1 54 0 526 257 96 18 chr21 37524960 37525178 -7382392 - MIR SINE MIR 0 262 28 414 200 45 0 chr21 37527017 37527127 -7380443 + L1M4 LINE L1 4389 4503 -1643 454 211 106 37 chr21 37527147 37527308 -7380262 + L1M4 LINE L1 4570 4741 -1405 2016 124 4 0 chr21 37527342 37527609 -7379961 + AluSq SINE Alu 1 268 -45 24 0 0 0 chr21 37527648 37527672 -7379898 + AT_rich Low_complexity Low_complexity 1 24 0 600 241 84 68 chr21 37527942 37528093 -7379477 + L1MCc LINE L1 -467 4294966976 -6228 1973 127 3 41 chr21 37528093 37528407 -7379163 + AluSq SINE Alu 1 302 -11 600 241 84 68 chr21 37528407 37528636 -7378934 + L1MCc LINE L1 -320 4294967215 -5989 479 283 108 21 chr21 37528905 37529184 -7378386 + L1MCc LINE L1 600 902 -5006 228 227 13 27 chr21 37529254 37529329 -7378241 + L1MCc LINE L1 1333 1406 -5020 2079 79 8 4 chr21 37529331 37529598 -7377972 + AluY SINE Alu 35 302 -9 1210 243 67 37 chr21 37529613 37530141 -7377429 + MLT1E LTR MaLR 1 593 0 262 247 68 25 chr21 37530143 37530332 -7377238 + L1MCc LINE L1 1436 1667 -4761 2366 92 7 3 chr21 37530379 37530684 -7376886 - AluSx SINE Alu -6 306 1 2074 138 7 16 chr21 37530870 37531174 -7376396 + AluSx SINE Alu 1 301 -11 1966 140 18 0 chr21 37531178 37531464 -7376106 + AluSx SINE Alu 1 291 -21 2092 130 0 22 chr21 37531637 37531952 -7375618 + AluSg SINE Alu 1 308 -2 1727 144 38 0 chr21 37531985 37532249 -7375321 + AluJb SINE Alu 35 308 -4 2362 94 3 0 chr21 37532261 37532569 -7375001 + AluSq SINE Alu 2 310 -3 696 260 130 39 chr21 37532637 37532734 -7374836 + L1MCc LINE L1 2377 2464 -3962 1638 169 17 27 chr21 37532734 37533030 -7374540 + AluJo SINE Alu 6 298 -14 696 260 130 39 chr21 37533030 37533358 -7374212 + L1MCc LINE L1 2464 2822 -3604 2233 123 3 0 chr21 37533358 37533659 -7373911 - AluSx SINE Alu -10 302 1 696 260 130 39 chr21 37533659 37533741 -7373829 + L1MCc LINE L1 2822 2895 -3531 1498 178 10 40 chr21 37533845 37533983 -7373587 + AluJb SINE Alu 1 142 -170 2305 97 7 3 chr21 37533983 37534283 -7373287 + AluSc SINE Alu 1 301 -8 1498 178 10 40 chr21 37534283 37534448 -7373122 + AluJb SINE Alu 142 295 -17 2446 74 0 3 chr21 37534473 37534769 -7372801 - AluSc SINE Alu -14 295 1 2270 108 0 0 chr21 37535255 37535552 -7372018 - AluSq SINE Alu -14 299 3 21 57 0 0 chr21 37535552 37535587 -7371983 + AT_rich Low_complexity Low_complexity 1 35 0 210 169 46 0 chr21 37535835 37535900 -7371670 + (TA)n Simple_repeat Simple_repeat 1 68 0 480 187 0 11 chr21 37536453 37536544 -7371026 - FLAM_A SINE Alu -17 125 36 2101 149 0 0 chr21 37536600 37536908 -7370662 + AluSx SINE Alu 1 308 -4 221 296 89 41 chr21 37536972 37537141 -7370429 + MER5A DNA MER1_type 12 188 -1 2229 110 0 0 chr21 37537294 37537593 -7369977 + AluSc SINE Alu 1 299 -10 1221 159 119 40 chr21 37537601 37537852 -7369718 + AluJo SINE Alu 6 276 -36 2666 33 0 3 chr21 37537943 37538245 -7369325 + AluY SINE Alu 1 301 -10 342 264 45 0 chr21 37538284 37538394 -7369176 + L1MC5 LINE L1 7668 7782 -179 1141 92 0 0 chr21 37538634 37538776 -7368794 + AluSq/x SINE Alu 1 142 -170 1573 84 147 0 chr21 37538777 37539015 -7368555 + AluSx SINE Alu 21 293 -19 503 169 52 78 chr21 37539086 37539240 -7368330 - AluJb SINE Alu -8 304 155 1372 171 66 49 chr21 37539568 37539855 -7367715 - AluJo SINE Alu -20 292 1 21 0 0 0 chr21 37540157 37540178 -7367392 + AT_rich Low_complexity Low_complexity 1 21 0 207 62 78 16 chr21 37541346 37541410 -7366160 + (CGGG)n Simple_repeat Simple_repeat 2 69 0 225 0 0 0 chr21 37541990 37542015 -7365555 + (CCG)n Simple_repeat Simple_repeat 2 26 0 259 236 167 99 chr21 37543156 37543389 -7364181 + MIR SINE MIR 14 262 0 2067 88 24 30 chr21 37543408 37543705 -7363865 - AluSx SINE Alu -17 295 1 2237 85 0 10 chr21 37543753 37544046 -7363524 + AluSc SINE Alu 2 291 -18 1728 167 7 7 chr21 37545059 37545347 -7362223 + AluJb SINE Alu 3 290 -22 231 240 107 0 chr21 37545864 37545939 -7361631 - MIR SINE MIR -136 126 44 191 323 31 21 chr21 37545992 37546088 -7361482 - MIR SINE MIR -117 145 49 215 167 114 114 chr21 37546097 37546171 -7361399 - MIR SINE MIR -58 204 128 1507 201 10 7 chr21 37546171 37546459 -7361111 + AluJo SINE Alu 3 291 -21 215 167 114 114 chr21 37546459 37546498 -7361072 - MIR SINE MIR -133 129 91 1121 184 111 8 chr21 37547036 37547280 -7360290 - AluJo SINE Alu -3 309 41 602 164 173 0 chr21 37547343 37547453 -7360117 - FLAM_C SINE Alu -2 131 3 180 328 17 0 chr21 37547980 37548038 -7359532 - MIR SINE MIR -10 252 194 204 279 0 0 chr21 37548248 37548309 -7359261 + T-rich Low_complexity Low_complexity 3 63 0 524 345 102 0 chr21 37548500 37548726 -7358844 + LTR33 LTR ERVL 101 349 -172 1738 179 7 0 chr21 37548739 37549029 -7358541 - AluJb SINE Alu -16 296 5 1053 230 162 41 chr21 37549047 37549068 -7358502 + L2 LINE L2 2444 2461 -852 2306 104 13 0 chr21 37549068 37549367 -7358203 - AluSx SINE Alu -9 303 1 1053 230 162 41 chr21 37549367 37549563 -7358007 + L2 LINE L2 2461 2632 -681 2421 99 0 0 chr21 37549563 37549866 -7357704 + AluSq SINE Alu 1 303 -10 1053 230 162 41 chr21 37549866 37550439 -7357131 + L2 LINE L2 2632 3312 -1 2175 83 10 17 chr21 37550539 37550829 -7356741 + AluSx SINE Alu 3 290 -22 687 158 0 17 chr21 37551628 37551748 -7355822 - FLAM_C SINE Alu -2 141 24 1803 162 0 13 chr21 37551779 37552082 -7355488 + AluJb SINE Alu 1 299 -13 980 138 26 37 chr21 37552187 37552336 -7355234 - L1PA16 LINE L1 -4 6162 6014 2294 92 13 25 chr21 37552336 37552653 -7354917 - AluSq SINE Alu 0 313 1 980 138 26 37 chr21 37552653 37552692 -7354878 - L1PA16 LINE L1 -152 6014 5976 260 109 0 22 chr21 37552692 37552738 -7354832 + MSTA LTR MaLR 61 105 -323 1456 78 72 0 chr21 37552753 37552946 -7354624 - AluSg/x SINE Alu -4 308 102 1978 246 47 17 chr21 37552993 37553522 -7354048 + L1ME1 LINE L1 5617 6161 -5 2080 87 106 0 chr21 37553677 37553952 -7353618 - AluSx SINE Alu -6 306 3 225 234 21 21 chr21 37554003 37554097 -7353473 + (TATTG)n Simple_repeat Simple_repeat 4 97 0 1791 163 7 13 chr21 37554097 37554403 -7353167 - AluJo SINE Alu -8 304 1 2387 92 3 0 chr21 37554526 37554829 -7352741 - AluSx SINE Alu -8 304 1 1273 167 4 57 chr21 37555003 37555267 -7352303 + AluJo SINE Alu 1 250 -62 379 305 171 21 chr21 37555330 37555717 -7351853 - LTR33 LTR ERVL -54 467 23 400 272 25 25 chr21 37555739 37555901 -7351669 - L1ME3 LINE L1 -278 5884 5723 1536 184 0 11 chr21 37556037 37556358 -7351212 + AluJo SINE Alu 19 336 0 516 111 11 11 chr21 37556451 37556541 -7351029 - L1MB4 LINE L1 0 6180 6091 2289 116 0 0 chr21 37556592 37556886 -7350684 - AluSx SINE Alu -18 294 1 444 309 58 0 chr21 37557127 37557318 -7350252 - L1ME3 LINE L1 -2038 5770 5569 428 250 21 0 chr21 37557481 37557577 -7349993 - L2 LINE L2 -1 3312 3215 1524 193 104 67 chr21 37557828 37558254 -7349316 + L1ME2 LINE L1 5643 6091 -73 2094 109 14 0 chr21 37558254 37558548 -7349022 - AluSx SINE Alu -14 298 1 1524 193 104 67 chr21 37558548 37558613 -7348957 + L1ME2 LINE L1 6091 6152 -12 2072 129 0 3 chr21 37558732 37559043 -7348527 + AluSx SINE Alu 1 310 -2 2151 88 11 0 chr21 37559050 37559333 -7348237 + AluSg SINE Alu 1 286 -24 1959 153 0 10 chr21 37559458 37559766 -7347804 + AluSq SINE Alu 1 305 -8 2211 79 0 20 chr21 37559827 37560132 -7347438 - AluSg SINE Alu -11 299 1 2321 126 38 59 chr21 37560514 37560958 -7346612 + LTR36 LTR ERV1 1 435 -176 946 171 145 43 chr21 37560962 37561109 -7346461 - AluJb SINE Alu 0 317 186 688 75 7 137 chr21 37561109 37561208 -7346362 + L1MB3 LINE L1 6056 6132 -51 1760 154 7 0 chr21 37561208 37561500 -7346070 - AluSx SINE Alu -18 294 1 688 75 7 137 chr21 37561500 37561546 -7346024 + L1MB3 LINE L1 6132 6182 -1 946 171 145 43 chr21 37561546 37561665 -7345905 - AluJb SINE Alu -131 186 27 343 222 80 89 chr21 37561668 37561787 -7345783 - L1ME3 LINE L1 -746 5400 5284 2282 82 0 7 chr21 37561787 37562092 -7345478 - AluSp SINE Alu -10 303 1 343 222 80 89 chr21 37562092 37562166 -7345404 - L1ME3 LINE L1 -862 5284 5211 651 192 13 26 chr21 37562209 37562360 -7345210 + FRAM SINE Alu 13 161 -15 329 309 40 20 chr21 37562366 37562609 -7344961 - L1ME3 LINE L1 -979 5167 4923 180 0 0 0 chr21 37562618 37562638 -7344932 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2087 106 0 0 chr21 37562642 37562924 -7344646 - AluSq SINE Alu -31 282 1 2037 174 126 5 chr21 37563103 37563499 -7344071 + L1PB4 LINE L1 5713 6156 0 2076 112 3 13 chr21 37563507 37563820 -7343750 + AluSg SINE Alu 1 310 0 2411 60 0 0 chr21 37563927 37564228 -7343342 - AluY SINE Alu -10 301 1 26 30 0 0 chr21 37564742 37564775 -7342795 + AT_rich Low_complexity Low_complexity 1 33 0 2442 53 0 0 chr21 37565430 37565730 -7341840 - AluY SINE Alu 0 311 12 194 0 39 0 chr21 37565770 37565796 -7341774 + (TA)n Simple_repeat Simple_repeat 1 27 0 1905 119 20 7 chr21 37565797 37566090 -7341480 - AluSx SINE Alu -15 297 1 2152 61 7 14 chr21 37566368 37566661 -7340909 - AluY SINE Alu -20 291 1 1680 138 27 20 chr21 37566820 37567118 -7340452 - AluSx SINE Alu -12 300 1 1300 174 40 4 chr21 37568113 37568360 -7339210 - AluJo SINE Alu -26 286 31 2111 96 0 7 chr21 37568464 37568757 -7338813 + AluSg SINE Alu 6 296 -14 1639 153 43 0 chr21 37569675 37569956 -7337614 - AluSq SINE Alu -20 293 1 1259 194 148 0 chr21 37570099 37570383 -7337187 + MER7A DNA MER2_type 23 346 0 1476 99 0 19 chr21 37570445 37570656 -7336914 - AluSg/x SINE Alu -19 291 85 2112 212 60 38 chr21 37571657 37572186 -7335384 - MER82 DNA MER2_type -29 624 84 2130 109 0 3 chr21 37572373 37572676 -7334894 + AluSq SINE Alu 1 302 -11 528 138 0 0 chr21 37572944 37573024 -7334546 + HY3 scRNA scRNA 10 89 -12 261 0 0 0 chr21 37573510 37573539 -7334031 + (CA)n Simple_repeat Simple_repeat 1 29 0 339 196 10 108 chr21 37573751 37573853 -7333717 - U13 snRNA snRNA 0 104 13 207 0 0 0 chr21 37575458 37575481 -7332089 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr21 37575735 37575756 -7331814 + AT_rich Low_complexity Low_complexity 1 21 0 202 116 0 70 chr21 37577137 37577180 -7330390 + (CCCG)n Simple_repeat Simple_repeat 3 42 0 34 65 0 0 chr21 37577237 37577299 -7330271 + GC_rich Low_complexity Low_complexity 1 62 0 214 260 26 0 chr21 37577505 37577582 -7329988 + C-rich Low_complexity Low_complexity 4 82 0 33 0 0 0 chr21 37577656 37577689 -7329881 + GC_rich Low_complexity Low_complexity 1 33 0 1646 128 12 0 chr21 37578131 37578389 -7329181 - AluJb SINE Alu -22 290 30 237 189 19 0 chr21 37578762 37578815 -7328755 - L2 LINE L2 -13 3259 3206 1017 179 106 9 chr21 37579293 37579511 -7328059 - 7SLRNA srpRNA srpRNA -78 242 4 1801 239 66 33 chr21 37579513 37580062 -7327508 + L1ME3A LINE L1 5580 6146 -24 2195 81 0 0 chr21 37580064 37580373 -7327197 - AluY SINE Alu 0 309 1 252 281 22 11 chr21 37580511 37580600 -7326970 + MER102b DNA MER1_type 252 341 0 1053 176 4 54 chr21 37580690 37580929 -7326641 + AluJo SINE Alu 85 311 -1 250 259 98 18 chr21 37581074 37581186 -7326384 - L1MC/D LINE L1 -1906 5902 5782 5731 222 68 43 chr21 37581253 37581527 -7326043 + L1M1 LINE L1 2446 2712 -4853 2099 136 0 0 chr21 37581527 37581828 -7325742 + AluSx SINE Alu 1 301 -11 5731 222 68 43 chr21 37581828 37582351 -7325219 + L1M1 LINE L1 2712 3221 -4344 2197 82 3 13 chr21 37582351 37582656 -7324914 - AluY SINE Alu -9 302 1 5731 222 68 43 chr21 37582656 37582850 -7324720 + L1M1 LINE L1 3221 3409 -4156 2061 134 0 0 chr21 37582850 37583156 -7324414 + AluSx SINE Alu 1 306 -6 5731 222 68 43 chr21 37583156 37583268 -7324302 + L1M1 LINE L1 3409 3517 -4048 836 232 0 40 chr21 37583268 37583445 -7324125 + FAM SINE Alu 1 170 -5 5731 222 68 43 chr21 37583445 37584000 -7323570 + L1M1 LINE L1 3517 4057 -3508 1934 131 0 7 chr21 37584000 37584290 -7323280 - AluSx SINE Alu -24 288 1 5731 222 68 43 chr21 37584290 37584566 -7323004 + L1M1 LINE L1 4057 4325 -3240 2260 76 0 10 chr21 37584566 37584868 -7322702 + AluY SINE Alu 1 299 -12 5731 222 68 43 chr21 37584868 37585015 -7322555 + L1M1 LINE L1 4325 4467 -3098 2145 92 0 3 chr21 37585015 37585309 -7322261 + AluSc SINE Alu 1 293 -16 5731 222 68 43 chr21 37585309 37585846 -7321724 + L1M1 LINE L1 4467 5150 -2415 2730 95 3 3 chr21 37585853 37586219 -7321351 - HSMAR1 DNA Mariner -1 1286 921 1064 62 0 0 chr21 37586219 37586347 -7321223 - THE1A LTR MaLR 0 355 228 1822 114 3 81 chr21 37586347 37586681 -7320889 - AluSq SINE Alu -5 308 1 361 134 194 0 chr21 37586687 37586754 -7320816 + MER41C-int LTR ERV1 6583 6662 -1094 1126 138 0 0 chr21 37586754 37586921 -7320649 + AluSx SINE Alu 23 189 -123 8432 75 25 0 chr21 37586922 37587993 -7319577 + MER41C-int LTR ERV1 6659 7756 0 2444 119 46 3 chr21 37587993 37588362 -7319208 + MER41C LTR ERV1 1 385 -169 1363 193 4 8 chr21 37588372 37588636 -7318934 - AluJo SINE Alu -10 302 40 2066 103 0 0 chr21 37588662 37588943 -7318627 - AluSx SINE Alu -31 281 1 371 174 0 98 chr21 37588976 37589068 -7318502 + AluJb SINE Alu 41 117 -185 752 219 16 69 chr21 37589068 37589314 -7318256 + L1MA10 LINE L1 6102 6334 0 1590 164 0 34 chr21 37589320 37589618 -7317952 + AluJo SINE Alu 1 288 -24 241 299 149 9 chr21 37589619 37589726 -7317844 - L2 LINE L2 -86 3227 3106 2285 94 0 0 chr21 37590080 37590379 -7317191 - AluSq SINE Alu -14 299 1 209 255 0 0 chr21 37591000 37591051 -7316519 + GA-rich Low_complexity Low_complexity 3 53 0 2556 49 0 0 chr21 37591537 37591844 -7315726 + AluY SINE Alu 5 311 0 808 237 75 0 chr21 37592306 37592492 -7315078 - AluJo SINE Alu -11 301 102 2052 111 17 10 chr21 37593076 37593373 -7314197 - AluSx SINE Alu -13 299 1 1595 137 115 22 chr21 37593721 37594035 -7313535 - L1MB2 LINE L1 -6 6165 5823 1302 158 39 124 chr21 37594035 37594365 -7313205 - AluJo SINE Alu 0 302 1 2200 109 0 0 chr21 37594375 37594677 -7312893 - AluSx SINE Alu -10 302 1 704 220 0 0 chr21 37594685 37594817 -7312753 - FLAM_C SINE Alu -1 132 1 29 0 0 0 chr21 37594819 37594848 -7312722 + AT_rich Low_complexity Low_complexity 1 29 0 1778 126 0 4 chr21 37594858 37595120 -7312450 - AluSx SINE Alu -51 261 1 561 216 31 0 chr21 37595208 37595370 -7312200 + C-rich Low_complexity Low_complexity 3 169 0 1170 191 4 43 chr21 37595377 37595633 -7311937 - AluJb SINE Alu -20 292 47 526 229 28 42 chr21 37595635 37595811 -7311759 - L1MB8 LINE L1 -65 6107 5940 1059 225 0 0 chr21 37595813 37596031 -7311539 + AluJb SINE Alu 83 300 -12 1097 165 62 45 chr21 37596032 37596384 -7311186 + L1M3 LINE L1 5163 5524 -642 2113 100 3 7 chr21 37596398 37596698 -7310872 - AluSx SINE Alu -13 299 1 240 136 0 169 chr21 37596698 37596757 -7310813 + L1M3 LINE L1 5515 5563 -771 2165 70 11 3 chr21 37596758 37597044 -7310526 + AluSc SINE Alu 1 288 -21 814 119 0 0 chr21 37597054 37597163 -7310407 + AluSg/x SINE Alu 183 291 -21 315 0 0 0 chr21 37597184 37597219 -7310351 + (CA)n Simple_repeat Simple_repeat 2 36 0 248 158 18 0 chr21 37597219 37597276 -7310294 + GA-rich Low_complexity Low_complexity 1 58 0 1539 210 90 37 chr21 37597281 37597691 -7309879 + MER70B LTR ERVL 4 435 -143 233 69 0 0 chr21 37597762 37597791 -7309779 + MER70B LTR ERVL 539 567 -11 378 250 29 107 chr21 37597851 37597909 -7309661 + L1MC4 LINE L1 7914 7975 -67 823 167 8 0 chr21 37597909 37598041 -7309529 - FLAM_C SINE Alu 0 133 1 378 250 29 107 chr21 37598041 37598081 -7309489 + L1MC4 LINE L1 7975 8000 -42 1670 175 0 32 chr21 37598081 37598396 -7309174 - AluJo SINE Alu -7 305 1 378 250 29 107 chr21 37598396 37598436 -7309134 + L1MC4 LINE L1 8000 8042 0 22 0 0 0 chr21 37598441 37598463 -7309107 + AT_rich Low_complexity Low_complexity 1 22 0 2206 108 0 7 chr21 37598689 37598994 -7308576 + AluSx SINE Alu 1 303 -9 341 185 0 0 chr21 37599015 37599080 -7308490 - L1MB5 LINE L1 0 6174 6110 2186 112 3 0 chr21 37599181 37599493 -7308077 - AluSq SINE Alu 0 313 1 2352 55 13 3 chr21 37599633 37599941 -7307629 - AluY SINE Alu 0 311 1 579 200 0 0 chr21 37599947 37600057 -7307513 - FLAM_C SINE Alu -32 111 2 569 173 16 0 chr21 37600063 37600190 -7307380 - L1MA4 LINE L1 -3 6297 6169 962 163 0 0 chr21 37600215 37600368 -7307202 + FRAM SINE Alu 1 146 -30 2291 96 3 0 chr21 37601185 37601497 -7306073 + AluSq SINE Alu 1 313 0 251 133 0 33 chr21 37601654 37601714 -7305856 + (TCCCC)n Simple_repeat Simple_repeat 3 60 0 1778 159 7 3 chr21 37601714 37602004 -7305566 - AluJb SINE Alu -21 291 1 1736 168 17 0 chr21 37602304 37602601 -7304969 - AluJb SINE Alu -10 302 1 2198 107 3 0 chr21 37602862 37603171 -7304399 - AluSx SINE Alu -2 310 1 565 171 143 0 chr21 37603250 37603355 -7304215 - FLAM_C SINE Alu -22 121 2 2085 211 67 17 chr21 37603810 37604285 -7303285 + MLT1D LTR MaLR 5 503 -2 2060 118 6 22 chr21 37604703 37605016 -7302554 - AluSx SINE Alu -4 308 1 2077 120 7 0 chr21 37605286 37605767 -7301803 - AluSq SINE Alu 0 313 1 1625 157 7 11 chr21 37605796 37606077 -7301493 - AluJb SINE Alu -29 283 4 2264 52 14 3 chr21 37606180 37606470 -7301100 - AluSc SINE Alu -16 293 1 3753 129 38 49 chr21 37608403 37608529 -7299041 - L1MB3 LINE L1 -2 6181 6055 1701 162 55 4 chr21 37608529 37608801 -7298769 - AluSx SINE Alu -26 286 1 3753 129 38 49 chr21 37608801 37608815 -7298755 - L1MB3 LINE L1 -128 6055 6042 2132 136 0 0 chr21 37608815 37609117 -7298453 - AluSx SINE Alu -10 302 1 3753 129 38 49 chr21 37609117 37609689 -7297881 - L1MB3 LINE L1 -141 6042 5476 2430 79 0 13 chr21 37609701 37610016 -7297554 - AluY SINE Alu 0 311 1 1201 132 0 20 chr21 37610018 37610033 -7297537 - AluSg/x SINE Alu -3 307 293 2452 97 0 0 chr21 37610033 37610344 -7297226 - AluSq SINE Alu -2 311 1 1201 132 0 20 chr21 37610344 37610508 -7297062 - AluSg/x SINE Alu -17 293 130 2311 98 0 0 chr21 37610508 37610803 -7296767 - AluSx SINE Alu -17 295 1 1201 132 0 20 chr21 37610803 37610819 -7296751 - AluSg/x SINE Alu -180 130 115 895 144 69 0 chr21 37610823 37610997 -7296573 - L1MB3 LINE L1 -710 5470 5285 2143 111 0 10 chr21 37611001 37611322 -7296248 - AluSx SINE Alu 0 318 1 1178 81 29 23 chr21 37611333 37611507 -7296063 - L1PA13 LINE L1 0 6163 5989 1666 136 30 53 chr21 37613612 37613914 -7293656 - AluJo SINE Alu -17 295 1 1393 139 39 9 chr21 37614855 37615085 -7292485 + AluJb SINE Alu 1 237 -75 492 254 144 5 chr21 37615101 37615302 -7292268 - L1MC4 LINE L1 -283 7759 7531 381 123 0 0 chr21 37615813 37615878 -7291692 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1013 114 0 7 chr21 37615894 37616034 -7291536 - AluJb SINE Alu -173 139 1 820 214 12 0 chr21 37616034 37616207 -7291363 - FRAM SINE Alu -2 174 1 256 295 1 0 chr21 37616211 37616296 -7291274 - L1MC4 LINE L1 -1471 6524 6443 180 0 0 0 chr21 37616805 37616825 -7290745 + (T)n Simple_repeat Simple_repeat 1 20 0 1836 178 86 57 chr21 37616934 37617411 -7290159 - LTR42 LTR ERVL -1 494 4 340 333 28 0 chr21 37620188 37620296 -7287274 - MIR SINE MIR -130 132 22 2127 131 3 10 chr21 37620407 37620712 -7286858 - AluSx SINE Alu -9 303 1 2064 127 23 3 chr21 37620810 37621110 -7286460 + AluSx SINE Alu 1 306 -6 2176 162 25 6 chr21 37621250 37621608 -7285962 - MLT1A1 LTR MaLR 0 365 1 1649 168 36 32 chr21 37621625 37621934 -7285636 - AluJo SINE Alu -1 311 2 2253 105 3 0 chr21 37622131 37622426 -7285144 - AluSx SINE Alu -16 296 1 2220 95 3 41 chr21 37622876 37623021 -7284549 + AluSx SINE Alu 1 150 -162 2242 72 43 0 chr21 37623021 37623300 -7284270 + AluY SINE Alu 1 291 -20 2220 95 3 41 chr21 37623300 37623471 -7284099 + AluSx SINE Alu 150 305 -7 2129 106 31 3 chr21 37625374 37625667 -7281903 - AluSx SINE Alu -11 301 1 1169 59 0 0 chr21 37625667 37625802 -7281768 - AluSq/x SINE Alu -177 135 1 2125 109 20 10 chr21 37626195 37626499 -7281071 - AluSx SINE Alu -3 309 3 666 73 248 28 chr21 37626675 37626784 -7280786 - FLAM_C SINE Alu 0 133 1 1663 155 10 24 chr21 37627676 37627966 -7279604 - AluJo SINE Alu -15 297 12 906 146 15 0 chr21 37627973 37628110 -7279460 - AluJo SINE Alu -173 139 1 22 35 0 0 chr21 37628124 37628153 -7279417 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr21 37628159 37628201 -7279369 + AT_rich Low_complexity Low_complexity 1 42 0 2471 162 32 34 chr21 37628372 37628842 -7278728 + Tigger1 DNA MER2_type 1 469 -1949 26 0 0 0 chr21 37628850 37628876 -7278694 + AT_rich Low_complexity Low_complexity 1 26 0 2208 89 0 4 chr21 37628877 37629157 -7278413 - AluSx SINE Alu -23 289 11 252 255 51 57 chr21 37629513 37629670 -7277900 - L1ME4a LINE L1 0 6121 5966 23 0 0 0 chr21 37630080 37630103 -7277467 + AT_rich Low_complexity Low_complexity 1 23 0 2139 41 52 4 chr21 37630104 37630375 -7277195 - AluY SINE Alu -27 284 1 2392 86 3 0 chr21 37630380 37630683 -7276887 - AluSx SINE Alu -8 304 1 971 113 21 0 chr21 37630686 37630828 -7276742 - AluSg/x SINE Alu -10 300 156 2019 116 7 29 chr21 37631224 37631534 -7276036 + AluSx SINE Alu 1 303 -9 203 138 0 0 chr21 37631564 37631593 -7275977 + (CATA)n Simple_repeat Simple_repeat 3 31 0 2131 124 0 7 chr21 37631596 37631895 -7275675 - AluSx SINE Alu -15 297 1 1953 149 14 3 chr21 37631960 37632256 -7275314 - AluJb SINE Alu -13 299 1 23 0 0 0 chr21 37632637 37632660 -7274910 + AT_rich Low_complexity Low_complexity 1 23 0 1968 157 10 3 chr21 37633707 37634006 -7273564 + AluJb SINE Alu 1 301 -11 230 29 59 0 chr21 37634006 37634040 -7273530 + (CAGAA)n Simple_repeat Simple_repeat 1 36 0 586 316 121 20 chr21 37634040 37634436 -7273134 + L1MC4a LINE L1 5431 5824 -297 443 240 39 0 chr21 37634440 37634544 -7273026 + L2 LINE L2 3206 3313 0 1219 245 32 7 chr21 37634931 37635241 -7272329 + HAL1 LINE L1 1530 1847 -660 1384 201 17 102 chr21 37635738 37636142 -7271428 + MLT1A2 LTR MaLR 1 370 -4 2227 120 0 10 chr21 37636348 37636656 -7270914 - AluSx SINE Alu -7 305 1 1440 221 14 29 chr21 37637790 37638163 -7269407 + L1ME2 LINE L1 5805 6332 -2 704 235 70 30 chr21 37638859 37639059 -7268511 - MER3 DNA MER1_type 0 209 2 634 221 128 5 chr21 37641266 37641469 -7266101 + MLT1G1 LTR MaLR 1 206 -389 312 27 0 0 chr21 37641469 37641506 -7266064 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 345 24 0 0 chr21 37641505 37641547 -7266023 + (TG)n Simple_repeat Simple_repeat 1 42 0 1336 180 75 7 chr21 37641676 37641954 -7265616 - AluJo SINE Alu -15 297 1 236 250 62 38 chr21 37641964 37642044 -7265526 - HAL1 LINE L1 -2413 94 13 3237 217 79 56 chr21 37642118 37643347 -7264223 - L1MC5 LINE L1 -44 7917 6661 2316 95 0 23 chr21 37643797 37644102 -7263468 - AluSx SINE Alu -14 298 1 517 246 59 32 chr21 37644222 37644312 -7263258 - L1MC5 LINE L1 -1804 6004 5918 2436 108 0 83 chr21 37644312 37644522 -7263048 - THE1B LTR MaLR 0 364 201 2394 66 0 16 chr21 37644522 37644827 -7262743 - AluY SINE Alu -10 301 2 2436 108 0 83 chr21 37644827 37645013 -7262557 - THE1B LTR MaLR -163 201 1 517 246 59 32 chr21 37645013 37645142 -7262428 - L1MC5 LINE L1 -1890 5918 5779 21 36 0 0 chr21 37645142 37645170 -7262400 + AT_rich Low_complexity Low_complexity 1 28 0 2347 103 3 10 chr21 37645252 37645562 -7262008 - AluSx SINE Alu -4 308 1 2188 142 3 0 chr21 37646005 37646316 -7261254 + AluJo SINE Alu 1 312 0 737 219 0 7 chr21 37646340 37646491 -7261079 + MLT1A1 LTR MaLR 28 177 -188 22 35 0 0 chr21 37646643 37646672 -7260898 + AT_rich Low_complexity Low_complexity 1 29 0 2177 136 0 3 chr21 37647002 37647310 -7260260 + AluSx SINE Alu 1 307 -5 1924 125 45 3 chr21 37647864 37648151 -7259419 - AluSg SINE Alu -11 299 1 289 299 203 15 chr21 37650396 37650593 -7256977 - MIR SINE MIR -6 256 23 1668 175 0 42 chr21 37650635 37650762 -7256808 + AluJo SINE Alu 1 132 -180 2250 108 0 13 chr21 37650762 37651076 -7256494 - AluSx SINE Alu -2 310 1 1668 175 0 42 chr21 37651076 37651256 -7256314 + AluJo SINE Alu 132 295 -17 300 311 29 0 chr21 37651267 37651370 -7256200 - MIR SINE MIR -1 261 156 235 228 98 54 chr21 37651657 37651749 -7255821 - MIR SINE MIR -104 158 63 279 245 10 31 chr21 37651782 37651880 -7255690 + (TATATG)n Simple_repeat Simple_repeat 2 97 0 1005 225 84 19 chr21 37653205 37653516 -7254054 - MER46C DNA MER2_type -1 337 7 2663 37 0 3 chr21 37654143 37654443 -7253127 + AluY SINE Alu 1 299 -12 189 0 0 0 chr21 37655341 37655362 -7252208 + (TA)n Simple_repeat Simple_repeat 2 22 0 2009 150 3 6 chr21 37655363 37655676 -7251894 - AluJb SINE Alu 0 312 1 1734 159 20 7 chr21 37656498 37656823 -7250747 + AluJb SINE Alu 1 312 0 1134 185 38 71 chr21 37657338 37657678 -7249892 + LTR56 LTR ERV1 1 329 -116 2482 74 0 0 chr21 37658280 37658578 -7248992 - AluSc SINE Alu -11 298 1 344 219 146 36 chr21 37659264 37659303 -7248267 - L1MA10 LINE L1 -2 6332 6294 2070 194 67 50 chr21 37659303 37659897 -7247673 - L1ME2 LINE L1 -48 6116 5534 2288 99 13 3 chr21 37659897 37660200 -7247370 + AluSq SINE Alu 1 306 -7 2070 194 67 50 chr21 37660200 37660528 -7247042 - L1ME2 LINE L1 -630 5534 4750 1160 157 5 25 chr21 37660528 37660732 -7246838 - AluJb SINE Alu -13 299 100 1886 178 0 0 chr21 37661287 37661580 -7245990 - AluJo SINE Alu -19 293 1 22 0 0 0 chr21 37662417 37662439 -7245131 + AT_rich Low_complexity Low_complexity 1 22 0 1930 94 0 8 chr21 37662455 37662700 -7244870 - AluSq SINE Alu -70 243 1 1934 140 3 17 chr21 37663256 37663548 -7244022 - AluJb SINE Alu -24 288 1 487 325 22 18 chr21 37663631 37663859 -7243711 + L2 LINE L2 3085 3313 0 298 240 107 40 chr21 37663954 37664104 -7243466 + L1MC4 LINE L1 3976 4135 -2011 1809 147 30 0 chr21 37664232 37664497 -7243073 - AluJb SINE Alu -22 290 18 523 312 111 50 chr21 37664602 37665144 -7242426 + L1MC4 LINE L1 4460 5034 -1112 22 0 0 0 chr21 37665232 37665254 -7242316 + AT_rich Low_complexity Low_complexity 1 22 0 490 229 170 46 chr21 37665309 37665527 -7242043 + L1MC4 LINE L1 5254 5498 -2310 2798 159 36 36 chr21 37665697 37666201 -7241369 + MLT1D LTR MaLR 2 505 0 1147 224 184 92 chr21 37666633 37667116 -7240454 + L1MC4 LINE L1 6461 6978 -1017 845 146 182 47 chr21 37667125 37667317 -7240253 + AluJo SINE Alu 84 301 -11 788 239 69 42 chr21 37667331 37667637 -7239933 + L1MC4 LINE L1 7274 7587 -455 1392 143 143 30 chr21 37667816 37668082 -7239488 + AluJb SINE Alu 1 296 -16 953 314 165 36 chr21 37668666 37670339 -7237231 - L2 LINE L2 0 3272 1388 2326 96 13 0 chr21 37670514 37670817 -7236753 + AluSx SINE Alu 1 307 -5 180 216 157 0 chr21 37670838 37670889 -7236681 + L2 LINE L2 3160 3218 -54 1446 278 42 8 chr21 37671342 37671838 -7235732 - L2 LINE L2 -648 2666 2154 502 292 120 15 chr21 37673153 37673484 -7234086 - L1ME LINE L1 -420 5701 5318 2094 130 10 10 chr21 37674173 37674481 -7233089 - AluSx SINE Alu -4 308 1 1540 207 97 35 chr21 37674618 37675053 -7232517 - MLT1C LTR MaLR -5 462 1 233 222 69 14 chr21 37675263 37675335 -7232235 + MER101B LTR ERV1 1 76 -494 678 143 111 0 chr21 37675339 37675465 -7232105 + AluSc SINE Alu 168 307 -2 1820 231 39 19 chr21 37675675 37676107 -7231463 + LTR51 LTR ERV1 218 658 -13 341 329 34 0 chr21 37676534 37676680 -7230890 + MIR SINE MIR 112 262 0 21 0 0 0 chr21 37676996 37677017 -7230553 + AT_rich Low_complexity Low_complexity 1 21 0 1383 168 6 75 chr21 37677547 37677880 -7229690 - AluJo SINE Alu 0 312 3 708 276 22 0 chr21 37680461 37680642 -7226928 + MIR SINE MIR 68 252 -10 231 198 9 54 chr21 37680680 37680791 -7226779 + (TTA)n Simple_repeat Simple_repeat 2 107 0 314 293 133 33 chr21 37681658 37681839 -7225731 - MIR SINE MIR -50 212 14 47 86 0 0 chr21 37683760 37683877 -7223693 + AT_rich Low_complexity Low_complexity 1 117 0 358 195 35 29 chr21 37683934 37684108 -7223462 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 214 134 85 0 chr21 37684141 37684305 -7223265 + (TA)n Simple_repeat Simple_repeat 1 178 0 23 33 0 0 chr21 37684307 37684337 -7223233 + AT_rich Low_complexity Low_complexity 1 30 0 1942 142 26 3 chr21 37684412 37684714 -7222856 + AluJb SINE Alu 1 309 -3 2254 118 3 13 chr21 37685087 37685400 -7222170 - AluSx SINE Alu -2 310 1 2220 120 0 0 chr21 37685410 37685709 -7221861 - AluSx SINE Alu -13 299 1 197 316 0 0 chr21 37685849 37685906 -7221664 + L2 LINE L2 3251 3307 -6 213 178 0 0 chr21 37685933 37685978 -7221592 + CT-rich Low_complexity Low_complexity 2 46 0 2299 112 0 0 chr21 37685978 37686283 -7221287 - AluSc SINE Alu -2 307 3 1482 148 17 122 chr21 37686286 37686631 -7220939 - AluJb SINE Alu -3 309 1 28 61 0 0 chr21 37687205 37687254 -7220316 + AT_rich Low_complexity Low_complexity 1 49 0 2178 80 43 0 chr21 37687254 37687530 -7220040 - AluSg SINE Alu -22 288 1 922 158 13 13 chr21 37687552 37687704 -7219866 - FRAM SINE Alu -14 162 11 304 128 47 128 chr21 37687859 37687898 -7219672 - LTR54 LTR ERV1 0 510 480 2282 93 10 3 chr21 37687898 37688199 -7219371 - AluSp SINE Alu -10 303 1 304 128 47 128 chr21 37688199 37688245 -7219325 - LTR54 LTR ERV1 -30 480 432 * 970 211 56 20 chr21 37688225 37688580 -7218990 - MER57B LTR ERV1 -58 345 1 2205 135 0 0 chr21 37688607 37688911 -7218659 - AluSx SINE Alu -8 304 1 1741 157 0 0 chr21 37689678 37689945 -7217625 - AluJo SINE Alu -44 268 2 221 250 54 43 chr21 37690183 37690275 -7217295 - MIR3 SINE MIR -15 193 101 728 231 64 0 chr21 37690396 37690569 -7217001 + MER58A DNA MER1_type 40 223 -1 1971 196 48 31 chr21 37690604 37690993 -7216577 - MLT1C LTR MaLR 0 467 67 2179 123 0 0 chr21 37690993 37691285 -7216285 - AluSq SINE Alu -21 292 1 1971 196 48 31 chr21 37691285 37691349 -7216221 - MLT1C LTR MaLR -400 67 6 27 73 0 0 chr21 37691624 37691679 -7215891 + AT_rich Low_complexity Low_complexity 1 55 0 339 164 0 0 chr21 37691743 37691804 -7215766 - FAM SINE Alu -2 177 117 792 147 39 70 chr21 37691804 37691960 -7215610 - AluJo SINE Alu -159 153 3 738 283 6 0 chr21 37692012 37692185 -7215385 + MER45A DNA AcHobo 4 177 -1 1245 301 43 40 chr21 37692291 37692352 -7215218 - L1MC4a LINE L1 -748 5467 5408 1774 166 3 10 chr21 37692352 37692653 -7214917 - AluJo SINE Alu -13 299 1 1245 301 43 40 chr21 37692653 37693230 -7214340 - L1MC4a LINE L1 -807 5408 5316 2838 105 13 5 chr21 37693230 37693602 -7213968 - THE1C LTR MaLR 0 375 1 1245 301 43 40 chr21 37693602 37693732 -7213838 - L1MC4a LINE L1 -899 5316 5188 1803 167 0 0 chr21 37695220 37695496 -7212074 - AluJo SINE Alu -31 281 6 947 89 7 0 chr21 37695500 37695635 -7211935 + MER65A LTR ERV1 293 428 -17 273 303 151 0 chr21 37695642 37695761 -7211809 - L1MC4a LINE L1 -2609 3606 3470 537 159 0 0 chr21 37695774 37695862 -7211708 - AluJb SINE Alu -14 298 211 588 107 0 0 chr21 37695900 37695984 -7211586 - L1MC1 LINE L1 -44 6289 6206 628 256 75 83 chr21 37696025 37696409 -7211161 - L1MC4a LINE L1 -2832 3383 3001 2108 107 13 19 chr21 37696409 37696718 -7210852 - AluSq SINE Alu -6 307 1 628 256 75 83 chr21 37696718 37696731 -7210839 - L1MC4a LINE L1 -3214 3001 2989 2156 120 0 10 chr21 37697025 37697324 -7210246 - AluSx SINE Alu -16 296 1 554 256 45 80 chr21 37697475 37697847 -7209723 - L1MC4a LINE L1 -4246 1970 1512 212 83 17 67 chr21 37697854 37697914 -7209656 + (TTC)n Simple_repeat Simple_repeat 1 57 0 859 127 0 63 chr21 37698062 37698204 -7209366 + FLAM_C SINE Alu 1 133 0 867 150 0 34 chr21 37698377 37698524 -7209046 - FLAM_C SINE Alu -1 142 1 958 292 95 52 chr21 37698524 37698900 -7208670 - L1MC4a LINE L1 -5084 1121 763 1705 175 130 11 chr21 37698900 37699254 -7208316 - MSTD LTR MaLR 0 396 1 958 292 95 52 chr21 37699254 37699613 -7207957 - L1MC4a LINE L1 -5442 763 354 2448 90 0 0 chr21 37700365 37700665 -7206905 + AluSx SINE Alu 1 300 -12 1991 142 7 0 chr21 37700739 37701028 -7206542 - AluJb SINE Alu -21 291 1 942 285 156 34 chr21 37702589 37703273 -7204297 - L2 LINE L2 -800 2514 1747 854 192 0 0 chr21 37704067 37704197 -7203373 - FLAM_A SINE Alu -3 130 1 330 328 61 26 chr21 37704197 37704426 -7203144 - L1ME LINE L1 -342 5779 5543 1254 169 57 0 chr21 37704629 37704877 -7202693 - L1MA8 LINE L1 -3 6288 6027 1856 251 44 55 chr21 37704994 37705850 -7201720 - HAL1 LINE L1 -851 1656 810 551 222 0 9 chr21 37705850 37705958 -7201612 + FLAM_A SINE Alu 1 107 -35 971 132 3 16 chr21 37705961 37706270 -7201300 + (TGG)n Simple_repeat Simple_repeat 3 306 0 513 293 100 4 chr21 37706276 37706525 -7201045 - HAL1 LINE L1 -1873 634 362 254 348 18 9 chr21 37706668 37706780 -7200790 - HAL1 LINE L1 -2391 116 4 2372 211 14 10 chr21 37706930 37707436 -7200134 - L1MB7 LINE L1 0 6184 5677 499 342 0 7 chr21 37707472 37707627 -7199943 + MER5A DNA MER1_type 35 188 -1 777 191 8 0 chr21 37707946 37708077 -7199493 + FLAM_C SINE Alu 2 133 0 222 378 8 31 chr21 37708192 37708319 -7199251 - MIR3 SINE MIR -70 138 15 839 254 39 134 chr21 37708536 37709329 -7198241 + L1MC4 LINE L1 7135 7852 -190 2203 107 3 0 chr21 37709440 37709731 -7197839 - AluSx SINE Alu -20 292 1 184 228 0 53 chr21 37710377 37710434 -7197136 + MIR SINE MIR 123 176 -86 203 313 90 0 chr21 37711002 37711069 -7196501 + L2 LINE L2 3175 3247 -25 23 0 0 0 chr21 37711189 37711212 -7196358 + AT_rich Low_complexity Low_complexity 1 23 0 298 342 34 7 chr21 37711380 37711529 -7196041 - MIR3 SINE MIR -4 204 52 1797 202 21 110 chr21 37711822 37712442 -7195128 - MER31-int LTR ERV1 -1042 3894 3330 2713 29 0 3 chr21 37712444 37712750 -7194820 - AluY SINE Alu -6 305 1 404 219 9 61 chr21 37712842 37712956 -7194614 - MER31-int LTR ERV1 -1648 3288 3181 2147 125 16 7 chr21 37713476 37713779 -7193791 - AluSx SINE Alu -5 307 2 2063 141 0 13 chr21 37713903 37714209 -7193361 - AluJb SINE Alu -10 302 1 236 299 31 31 chr21 37714267 37714364 -7193206 - MARNA DNA Mariner -56 530 434 226 331 25 41 chr21 37714269 37714390 -7193180 + MARNA DNA Mariner 59 177 -409 * 256 275 11 22 chr21 37714440 37714531 -7193039 - MARNA DNA Mariner -288 298 209 555 242 6 65 chr21 37714820 37714990 -7192580 - MER31-int LTR ERV1 -1473 4757 3337 270 136 0 0 chr21 37716413 37716457 -7191113 + MER5B DNA MER1_type 9 52 -126 350 65 0 0 chr21 37716461 37716507 -7191063 - MADE1 DNA Mariner 0 80 35 717 267 95 41 chr21 37717191 37717502 -7190068 - L1ME LINE L1 -3603 2477 2137 1762 151 38 14 chr21 37717502 37717794 -7189776 - AluJb SINE Alu -13 299 1 717 267 95 41 chr21 37717794 37717894 -7189676 - L1ME LINE L1 -3943 2137 2044 226 0 29 29 chr21 37717921 37717956 -7189614 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1761 106 4 16 chr21 37717970 37718215 -7189355 - AluSx SINE Alu -70 242 1 21 0 0 0 chr21 37718222 37718243 -7189327 + AT_rich Low_complexity Low_complexity 1 21 0 304 252 33 20 chr21 37718692 37718843 -7188727 - L1ME LINE L1 -4065 2015 1863 6503 138 13 12 chr21 37718851 37719206 -7188364 - L1PB1 LINE L1 -1 6150 5797 216 0 0 0 chr21 37719206 37719230 -7188340 + (TG)n Simple_repeat Simple_repeat 2 25 0 6503 138 13 12 chr21 37719230 37720807 -7186763 - L1PB1 LINE L1 -354 5797 4222 2112 249 54 35 chr21 37720779 37722177 -7185393 - L1ME LINE L1 -4320 1941 484 * 1617 193 17 24 chr21 37722248 37722543 -7185027 - AluJo SINE Alu -15 297 5 519 309 50 62 chr21 37722569 37722984 -7184586 + L1M4 LINE L1 3798 4216 -1930 2898 16 0 0 chr21 37722984 37723295 -7184275 + AluYb8 SINE Alu 1 311 -7 519 309 50 62 chr21 37723295 37723789 -7183781 + L1M4 LINE L1 4216 4697 -1449 245 250 20 26 chr21 37723876 37724028 -7183542 + (TA)n Simple_repeat Simple_repeat 1 151 0 370 210 156 32 chr21 37724205 37724391 -7183179 + L1M4 LINE L1 5127 5335 -811 369 287 69 45 chr21 37724393 37724682 -7182888 + L1MC/D LINE L1 5281 5576 -545 246 290 72 52 chr21 37724708 37724901 -7182669 + L1MC/D LINE L1 5696 5892 -1916 371 189 17 22 chr21 37725522 37725611 -7181959 + (TCTA)n Simple_repeat Simple_repeat 4 92 -138 2336 112 21 47 chr21 37725611 37725996 -7181574 - THE1C LTR MaLR 0 375 1 371 189 17 22 chr21 37725996 37726111 -7181459 + (TCTA)n Simple_repeat Simple_repeat 92 230 0 459 100 0 0 chr21 37726120 37726190 -7181380 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 24 32 0 0 chr21 37728287 37728318 -7179252 + AT_rich Low_complexity Low_complexity 1 31 0 2142 122 10 0 chr21 37728657 37728945 -7178625 + AluSx SINE Alu 1 291 -21 551 231 97 16 chr21 37729997 37730183 -7177387 - L1MD3 LINE L1 -8 7987 7787 1734 157 75 0 chr21 37731597 37731878 -7175692 - AluJo SINE Alu -10 302 1 290 280 50 0 chr21 37731980 37732080 -7175490 - L2 LINE L2 -23 3290 3186 2198 109 0 7 chr21 37732246 37732540 -7175030 + AluSq SINE Alu 1 292 -21 199 313 166 69 chr21 37732838 37733055 -7174515 - L2 LINE L2 0 3272 3035 201 292 135 42 chr21 37733104 37733193 -7174377 - L2 LINE L2 -431 2883 2804 2443 102 34 0 chr21 37733193 37733545 -7174025 - THE1B LTR MaLR 0 364 1 201 292 135 42 chr21 37733545 37733767 -7173803 - L2 LINE L2 -510 2804 2543 2317 89 4 0 chr21 37734095 37734398 -7173172 - AluSp SINE Alu 0 304 1 1394 172 109 15 chr21 37734419 37734686 -7172884 - AluJo SINE Alu -10 292 1 267 250 43 98 chr21 37734756 37734940 -7172630 + MIR3 SINE MIR 32 205 -3 2453 103 0 0 chr21 37736230 37736541 -7171029 - AluSx SINE Alu -1 311 1 2591 41 0 0 chr21 37736713 37737008 -7170562 - AluY SINE Alu -16 295 1 314 226 86 11 chr21 37737031 37737124 -7170446 - L1ME4a LINE L1 -22 6099 6000 516 134 0 25 chr21 37737128 37737247 -7170323 + (CA)n Simple_repeat Simple_repeat 2 117 0 342 0 0 0 chr21 37737676 37737714 -7169856 + (TA)n Simple_repeat Simple_repeat 1 38 0 465 114 56 30 chr21 37737873 37738331 -7169239 + (TG)n Simple_repeat Simple_repeat 1 469 0 1183 157 32 18 chr21 37739370 37739587 -7167983 + AluSg/x SINE Alu 90 309 -1 21 0 0 0 chr21 37739765 37739786 -7167784 + AT_rich Low_complexity Low_complexity 1 21 0 1971 150 20 3 chr21 37741128 37741428 -7166142 - AluJb SINE Alu -7 305 1 1946 101 0 0 chr21 37743455 37743702 -7163868 - AluSx SINE Alu -18 294 48 189 107 0 0 chr21 37744275 37744303 -7163267 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1906 145 30 0 chr21 37744530 37744826 -7162744 - AluSx SINE Alu -7 305 1 1692 159 25 4 chr21 37744859 37745160 -7162410 + AluJo SINE Alu 1 307 0 307 252 185 0 chr21 37746142 37746261 -7161309 - MIR SINE MIR -7 255 115 35 0 0 0 chr21 37747001 37747036 -7160534 + AT_rich Low_complexity Low_complexity 1 35 0 411 79 48 0 chr21 37747036 37747099 -7160471 - L1MA1 LINE L1 -7 6295 6230 3147 103 59 0 chr21 37747099 37747594 -7159976 - L1M1 LINE L1 -4624 2941 2418 5581 102 26 15 chr21 37747609 37748477 -7159093 - L1PB2 LINE L1 -2 6149 5272 6434 208 27 20 chr21 37748477 37751554 -7156016 - L1PBa LINE L1 -4704 2159 3 771 66 0 82 chr21 37751564 37751652 -7155918 - L1M1 LINE L1 -5132 2433 2356 2313 107 0 0 chr21 37751652 37751950 -7155620 + AluY SINE Alu 1 298 -13 771 66 0 82 chr21 37751950 37751983 -7155587 - L1M1 LINE L1 -5209 2356 2322 * 1059 188 68 5 chr21 37751981 37752173 -7155397 - L1M1 LINE L1 -6102 1463 1260 2069 106 21 0 chr21 37752832 37753116 -7154454 + AluSq SINE Alu 1 290 -23 37 17 0 34 chr21 37756868 37756901 -7150669 + AT_rich Low_complexity Low_complexity 1 33 -24 2133 139 0 0 chr21 37756901 37757189 -7150381 - AluSx SINE Alu -24 288 1 37 17 0 34 chr21 37757189 37757214 -7150356 + AT_rich Low_complexity Low_complexity 33 57 0 616 156 64 0 chr21 37757214 37757323 -7150247 - FLAM_C SINE Alu -27 116 1 1103 93 0 3 chr21 37757582 37757808 -7149762 + AluSx SINE Alu 2 297 -13 1041 227 44 23 chr21 37757808 37758151 -7149419 + MLT1C LTR MaLR 114 463 -4 228 320 131 11 chr21 37758172 37758347 -7149223 + L2 LINE L2 2044 2239 -1075 2841 174 85 14 chr21 37758424 37758998 -7148572 + L1MB2 LINE L1 5451 6065 -106 1540 82 5 0 chr21 37759161 37759355 -7148215 + AluSg/x SINE Alu 110 304 -6 244 260 103 27 chr21 37759459 37759605 -7147965 - L1ME4a LINE L1 -2 6119 5963 2485 60 7 7 chr21 37759873 37760175 -7147395 - AluSx SINE Alu -10 302 1 847 266 57 33 chr21 37760356 37760690 -7146880 - L1ME2 LINE L1 -9 6155 5814 331 141 32 90 chr21 37760695 37760851 -7146719 + T-rich Low_complexity Low_complexity 2 148 0 512 230 162 0 chr21 37760861 37761050 -7146520 - L1ME2 LINE L1 -336 5828 5601 491 316 13 51 chr21 37761142 37761254 -7146316 - MIR SINE MIR -10 252 152 1806 176 6 13 chr21 37761254 37761566 -7146004 - AluJo SINE Alu -2 310 1 491 316 13 51 chr21 37761566 37761687 -7145883 - MIR SINE MIR -110 152 28 1245 128 0 0 chr21 37761911 37762090 -7145480 + AluSg/x SINE Alu 134 312 0 5415 78 3 10 chr21 37762771 37763467 -7144103 - LTR8 LTR ERV1 0 691 1 1794 165 21 12 chr21 37763505 37763611 -7143959 + MER44D DNA MER2_type 2 106 -2385 1626 172 14 34 chr21 37763611 37763907 -7143663 + AluJo SINE Alu 5 294 -18 180 0 0 0 chr21 37763915 37763935 -7143635 + (GA)n Simple_repeat Simple_repeat 1 20 0 1794 165 21 12 chr21 37763935 37764146 -7143424 + MER44D DNA MER2_type 112 601 -8 1588 137 51 26 chr21 37764258 37764758 -7142812 - MER34C LTR ERV1 0 585 32 471 230 22 79 chr21 37764774 37764952 -7142618 + MIR SINE MIR 1 168 -94 4250 142 32 3 chr21 37764965 37765650 -7141920 - MER50 LTR ERV1 -23 711 7 2378 92 0 25 chr21 37766126 37766451 -7141119 - THE1A LTR MaLR -38 317 1 12265 85 4 3 chr21 37766461 37768034 -7139536 - THE1A-int LTR MaLR -6 1574 1 2799 79 3 0 chr21 37768034 37768388 -7139182 - THE1A LTR MaLR 0 355 1 2083 133 0 37 chr21 37768478 37768802 -7138768 - AluSx SINE Alu 0 312 1 2316 141 25 20 chr21 37769178 37769574 -7137996 - MER39B LTR ERV1 0 653 256 25 0 0 0 chr21 37769574 37769599 -7137971 + AT_rich Low_complexity Low_complexity 1 25 0 769 162 0 0 chr21 37769599 37769716 -7137854 - AluJb SINE Alu -194 118 2 854 149 49 0 chr21 37769719 37769935 -7137635 - MER39B LTR ERV1 -387 266 1 6752 163 38 35 chr21 37770057 37770112 -7137458 - MER39B-int LTR ERV1 -212 5938 5885 2380 91 3 0 chr21 37770112 37770409 -7137161 + AluSx SINE Alu 1 298 -14 6752 163 38 35 chr21 37770409 37770855 -7136715 - MER39B-int LTR ERV1 -265 5885 5442 2036 161 3 0 chr21 37770855 37771166 -7136404 + AluSx SINE Alu 1 312 0 6752 163 38 35 chr21 37771166 37771982 -7135588 - MER39B-int LTR ERV1 -708 5442 3495 2838 56 3 0 chr21 37771982 37772324 -7135246 + THE1A LTR MaLR 1 343 -12 2476 191 55 25 chr21 37772370 37772884 -7134686 - MER39B-int LTR ERV1 -3408 2923 2395 1308 130 36 22 chr21 37772884 37773107 -7134463 - MLT1A1 LTR MaLR -137 228 3 182 292 0 0 chr21 37773378 37773426 -7134144 - MIR SINE MIR -129 79 32 367 310 73 64 chr21 37773538 37773628 -7133942 + L2 LINE L2 2705 2793 -479 2309 107 107 20 chr21 37773628 37774022 -7133548 - MSTA LTR MaLR 0 428 1 367 310 73 64 chr21 37774022 37774280 -7133290 + L2 LINE L2 2793 3057 -215 514 271 79 35 chr21 37774983 37775186 -7132384 + L2 LINE L2 2873 3084 -229 439 223 0 0 chr21 37775200 37775294 -7132276 + AluJ/FRAM SINE Alu 218 311 -1 2738 178 25 21 chr21 37775312 37775731 -7131839 + L1MB7 LINE L1 5603 6026 -158 186 103 0 0 chr21 37775731 37775760 -7131810 + (TA)n Simple_repeat Simple_repeat 2 30 0 2738 178 25 21 chr21 37775760 37775912 -7131658 + L1MB7 LINE L1 6026 6176 -8 296 284 120 27 chr21 37775916 37776141 -7131429 + L2 LINE L2 3066 3311 -2 7293 62 5 3 chr21 37776250 37777410 -7130160 - L1PA8 LINE L1 0 6172 5012 796 181 8 0 chr21 37777668 37777801 -7129769 - MER74A LTR ERVL -38 520 387 1038 139 88 46 chr21 37777831 37777933 -7129637 - MER74A LTR ERVL -333 225 129 2350 164 57 7 chr21 37777933 37778372 -7129198 - LOR1b LTR ERV1 0 461 1 1038 139 88 46 chr21 37778372 37778485 -7129085 - MER74A LTR ERVL -429 129 1 407 222 0 0 chr21 37778692 37778764 -7128806 - MER45 DNA AcHobo -1 1580 1509 413 161 0 0 chr21 37778764 37778826 -7128744 + FRAM/FAM SINE Alu 1 61 -115 180 97 0 0 chr21 37779287 37779318 -7128252 + (CA)n Simple_repeat Simple_repeat 2 32 0 321 208 12 40 chr21 37780091 37780264 -7127306 + CT-rich Low_complexity Low_complexity 6 173 0 342 338 91 13 chr21 37780290 37780521 -7127049 - MIR SINE MIR -1 261 13 275 118 19 51 chr21 37780892 37780970 -7126600 + AluJb SINE Alu 73 133 -169 537 36 36 0 chr21 37780980 37781064 -7126506 + (TA)n Simple_repeat Simple_repeat 2 88 0 2497 69 0 28 chr21 37781188 37781508 -7126062 - AluY SINE Alu 0 311 1 1848 181 0 13 chr21 37781508 37781816 -7125754 - AluJb SINE Alu -7 305 1 7486 28 7 0 chr21 37782906 37783775 -7123795 - L1PA4 LINE L1 0 6155 5281 324 298 56 37 chr21 37784044 37784076 -7123494 + MIR SINE MIR 58 88 -174 2234 100 47 36 chr21 37784076 37784436 -7123134 + THE1B LTR MaLR 1 364 0 324 298 56 37 chr21 37784436 37784564 -7123006 + MIR SINE MIR 88 221 -41 3834 113 60 20 chr21 37784773 37785358 -7122212 - LTR9 LTR ERV1 0 612 5 271 344 89 0 chr21 37785814 37785870 -7121700 + MIR SINE MIR 50 100 -162 2587 107 25 67 chr21 37785870 37786317 -7121253 + MSTA LTR MaLR 1 428 0 271 344 89 0 chr21 37786317 37786440 -7121130 + MIR SINE MIR 100 245 -17 224 172 35 0 chr21 37786775 37786833 -7120737 + CT-rich Low_complexity Low_complexity 1 60 0 1101 232 110 55 chr21 37787367 37787803 -7119767 - MLT1C LTR MaLR 0 467 8 346 320 31 0 chr21 37788129 37788257 -7119313 + MIR SINE MIR 117 248 -14 292 267 89 39 chr21 37788429 37788609 -7118961 - LTR33 LTR ERVL -6 515 327 307 318 24 24 chr21 37788667 37788793 -7118777 - LTR33 LTR ERVL -294 227 102 510 202 11 38 chr21 37789481 37789664 -7117906 + CT-rich Low_complexity Low_complexity 3 180 0 469 198 119 28 chr21 37790384 37790551 -7117019 - L1MC/D LINE L1 -623 5543 5382 1823 161 6 19 chr21 37791209 37791388 -7116182 - AluJb SINE Alu -5 307 132 519 60 0 0 chr21 37791388 37791455 -7116115 + (TG)n Simple_repeat Simple_repeat 2 68 0 1823 161 6 19 chr21 37791455 37791586 -7115984 - AluJb SINE Alu -180 132 1 2335 106 3 0 chr21 37791622 37791924 -7115646 - AluSx SINE Alu -9 303 1 298 362 34 8 chr21 37792300 37792535 -7115035 + L2 LINE L2 37 277 -3037 728 229 123 63 chr21 37792541 37792891 -7114679 + L2 LINE L2 439 809 -2505 1047 184 58 0 chr21 37792891 37793081 -7114489 - MER3 DNA MER1_type 0 209 9 2922 282 101 59 chr21 37793093 37794963 -7112607 + L2 LINE L2 800 2790 -523 2130 129 0 0 chr21 37794963 37795258 -7112312 - AluSx SINE Alu -14 298 4 2922 282 101 59 chr21 37795258 37795694 -7111876 + L2 LINE L2 2790 3206 -107 1533 164 0 4 chr21 37795853 37796091 -7111479 + AluJb SINE Alu 1 237 -75 341 272 37 37 chr21 37796115 37796277 -7111293 + L2 LINE L2 3152 3313 0 1915 170 0 3 chr21 37796451 37796763 -7110807 - AluJb SINE Alu -1 311 1 539 282 107 71 chr21 37796858 37797336 -7110234 - L1M4 LINE L1 -1941 4205 3688 351 0 0 0 chr21 37797336 37797375 -7110195 + (TG)n Simple_repeat Simple_repeat 2 40 0 539 282 107 71 chr21 37797375 37797666 -7109904 - L1M4 LINE L1 -2458 3688 3409 420 186 9 44 chr21 37797740 37797853 -7109717 + L1P LINE L1 5105 5213 -933 34 0 0 0 chr21 37797944 37797978 -7109592 + AT_rich Low_complexity Low_complexity 1 34 0 640 294 89 45 chr21 37798059 37798372 -7109198 - LTR16A LTR ERVL -18 432 106 546 232 55 30 chr21 37798501 37798665 -7108905 - MER63A DNA MER1_type -4 206 39 2025 318 66 32 chr21 37798775 37799647 -7107923 - ERVL LTR ERVL -387 5377 4441 360 0 0 0 chr21 37799647 37799687 -7107883 + (TG)n Simple_repeat Simple_repeat 2 41 0 2025 318 66 32 chr21 37799687 37800156 -7107414 - ERVL LTR ERVL -1323 4441 3990 2003 171 3 32 chr21 37800852 37801227 -7106343 - MLT1A1 LTR MaLR 0 365 2 320 356 50 6 chr21 37801315 37801475 -7106095 + L3 LINE CR1 1385 1551 -26 * 331 211 221 0 chr21 37801472 37801576 -7105994 - L2 LINE L2 -1 3312 3186 279 0 0 0 chr21 37801794 37801825 -7105745 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr21 37801825 37801848 -7105722 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr21 37802331 37802353 -7105217 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1654 293 98 24 chr21 37802353 37803187 -7104383 + L1MEd LINE L1 65 960 -5159 745 267 61 36 chr21 37803189 37803622 -7103948 + L1MEd LINE L1 991 1529 -961 737 288 5 5 chr21 37803657 37803869 -7103701 - MIR SINE MIR -44 218 7 1293 224 16 4 chr21 37804236 37804481 -7103089 - LTR10B LTR ERV1 0 547 300 529 286 87 13 chr21 37804780 37805011 -7102559 - MIR SINE MIR -8 254 7 2455 126 61 22 chr21 37805453 37805558 -7102012 + MSTA LTR MaLR 1 100 -328 3110 156 62 72 chr21 37805558 37806256 -7101314 + LTR8 LTR ERV1 1 691 0 2455 126 61 22 chr21 37806256 37806562 -7101008 + MSTA LTR MaLR 100 428 0 2165 189 37 43 chr21 37807953 37808461 -7099109 + MLT1D LTR MaLR 1 505 0 298 326 11 11 chr21 37808462 37808554 -7099016 + MIR SINE MIR 7 98 -164 1683 130 47 89 chr21 37808697 37809058 -7098512 + MER7A DNA MER2_type 3 346 0 1620 0 0 0 chr21 37809830 37810128 -7097442 + (TTCCC)n Simple_repeat Simple_repeat 1 298 0 2278 83 7 3 chr21 37810133 37810422 -7097148 - AluSc SINE Alu -19 290 1 5683 152 11 33 chr21 37810954 37812736 -7094834 + L1MA5 LINE L1 4558 6300 0 2216 112 6 13 chr21 37812846 37813158 -7094412 - AluSg SINE Alu 0 310 1 1209 249 49 40 chr21 37813620 37814188 -7093382 + L1ME LINE L1 465 1023 -5047 1577 174 40 101 chr21 37814192 37814432 -7093138 - MLT1A2 LTR MaLR -2 372 164 1026 167 6 0 chr21 37814432 37814606 -7092964 - L1PB4 LINE L1 -12 6144 5970 1577 174 40 101 chr21 37814606 37814761 -7092809 - MLT1A2 LTR MaLR -210 164 1 2888 230 60 54 chr21 37814761 37815337 -7092233 + L1ME LINE L1 1018 1589 -4491 2275 107 0 28 chr21 37815337 37815655 -7091915 + AluSc SINE Alu 1 309 0 2888 230 60 54 chr21 37815655 37817097 -7090473 + L1ME LINE L1 1589 3054 -3026 2041 226 5 83 chr21 37817105 37817174 -7090396 + L1M4 LINE L1 4639 4712 -1434 1631 140 110 4 chr21 37817174 37817446 -7090124 + AluJb SINE Alu 1 301 -11 2041 226 5 83 chr21 37817446 37817597 -7089973 + L1M4 LINE L1 4712 4873 -1273 2656 72 35 16 chr21 37817597 37817973 -7089597 - L1PA13 LINE L1 0 6163 5781 2041 226 5 83 chr21 37817973 37818425 -7089145 + L1M4 LINE L1 4873 5259 -887 1282 191 114 3 chr21 37818477 37818782 -7088788 + L1PB1 LINE L1 5267 5598 -568 1881 158 0 30 chr21 37818812 37819109 -7088461 - AluJb SINE Alu -24 288 1 1596 186 43 0 chr21 37819330 37819609 -7087961 - AluJo SINE Alu -21 291 1 797 153 0 0 chr21 37820250 37820381 -7087189 + L1PB1 LINE L1 6020 6150 -1 1792 173 74 23 chr21 37820756 37820978 -7086592 + MLT2D LTR ERVL 1 254 -160 1955 142 0 10 chr21 37820978 37821297 -7086273 - AluJo SINE Alu 0 316 1 1792 173 74 23 chr21 37821297 37821467 -7086103 + MLT2D LTR ERVL 254 414 0 1501 210 36 46 chr21 37822090 37822480 -7085090 + MLT1B LTR MaLR 1 386 -4 2043 139 3 7 chr21 37822729 37823024 -7084546 + AluSx SINE Alu 1 294 -18 2338 112 35 19 chr21 37823107 37823474 -7084096 - THE1C LTR MaLR 0 375 3 2090 244 67 27 chr21 37823483 37824078 -7083492 + MLT1E2 LTR MaLR 1 619 -7 371 236 27 27 chr21 37824881 37824991 -7082579 - MER93b LTR ERV1 -133 240 131 264 273 91 0 chr21 37825113 37825212 -7082358 + MER93a LTR ERV1 295 402 0 * 719 191 29 0 chr21 37825212 37825347 -7082223 + MLT1B LTR MaLR 252 390 0 294 215 103 19 chr21 37828922 37829029 -7078541 - MER103 DNA DNA -1 165 50 1888 167 0 7 chr21 37829580 37829885 -7077685 + AluJb SINE Alu 1 303 -9 502 240 104 0 chr21 37830001 37830126 -7077444 + MIR SINE MIR 93 230 -32 197 62 0 31 chr21 37830132 37830164 -7077406 + (TAA)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr21 37830299 37830325 -7077245 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2347 78 0 0 chr21 37830325 37830609 -7076961 - AluY SINE Alu -24 287 1 1538 169 10 49 chr21 37831610 37831918 -7075652 - AluJo SINE Alu -6 306 11 619 168 106 9 chr21 37832611 37832724 -7074846 + FLAM_C SINE Alu 3 126 -7 283 146 0 0 chr21 37832736 37832777 -7074793 + FLAM SINE Alu 82 122 -11 2139 124 14 0 chr21 37832795 37833085 -7074485 - AluSx SINE Alu -18 294 1 726 165 0 0 chr21 37833085 37833206 -7074364 - FLAM_A SINE Alu -12 130 10 269 294 24 12 chr21 37833567 37833652 -7073918 - L2 LINE L2 -1 3271 3186 2263 100 0 3 chr21 37833717 37834017 -7073553 + AluSx SINE Alu 2 300 -12 186 211 0 0 chr21 37834115 37834153 -7073417 - MIR SINE MIR -107 155 118 195 318 107 22 chr21 37835673 37835991 -7071579 - L2 LINE L2 -115 3198 2854 935 181 78 29 chr21 37836177 37836381 -7071189 + MER20 DNA MER1_type 6 219 0 239 217 0 43 chr21 37836839 37836908 -7070662 + L2 LINE L2 2912 2977 -336 375 204 23 23 chr21 37838058 37838146 -7069424 - MER5B DNA MER1_type -90 88 1 310 316 0 0 chr21 37838322 37838420 -7069150 + MIR SINE MIR 78 175 -87 29 60 0 0 chr21 37838819 37838869 -7068701 + GC_rich Low_complexity Low_complexity 1 50 0 43 88 0 0 chr21 37839083 37839196 -7068374 + GC_rich Low_complexity Low_complexity 1 113 0 294 194 0 0 chr21 37839671 37839733 -7067837 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr21 37840353 37840375 -7067195 + AT_rich Low_complexity Low_complexity 1 22 0 825 240 9 14 chr21 37841596 37841817 -7065753 + MIR SINE MIR 13 232 -30 267 306 6 64 chr21 37841879 37842036 -7065534 - MARNA DNA Mariner -310 276 129 533 150 0 0 chr21 37842126 37842206 -7065364 + FLAM_A SINE Alu 49 128 -14 27 29 0 0 chr21 37842824 37842858 -7064712 + AT_rich Low_complexity Low_complexity 1 34 0 1843 134 78 33 chr21 37843310 37843669 -7063901 - THE1C LTR MaLR 0 375 1 1174 79 211 0 chr21 37843680 37843870 -7063700 - MER30 DNA MER1_type 0 230 1 1426 148 4 74 chr21 37843906 37844176 -7063394 + AluJo SINE Alu 40 290 -22 962 263 85 39 chr21 37844180 37845128 -7062442 - L1ME LINE L1 -367 6189 5198 1496 193 101 25 chr21 37845128 37845486 -7062084 - MLT1B LTR MaLR -5 385 1 310 283 35 21 chr21 37845652 37845797 -7061773 - L1ME LINE L1 -1303 5237 5091 2007 113 12 55 chr21 37845807 37846133 -7061437 - AluSx SINE Alu 0 312 1 1127 229 78 0 chr21 37846133 37846417 -7061153 - L1MC4 LINE L1 -287 7755 7450 380 279 91 7 chr21 37846517 37846671 -7060899 + MLT1I LTR MaLR 44 210 -199 310 171 134 0 chr21 37846788 37846870 -7060700 + MLT1I LTR MaLR 317 409 0 653 293 95 29 chr21 37846872 37846994 -7060576 - L1ME LINE L1 -1922 4618 4505 812 195 0 0 chr21 37846994 37847122 -7060448 + FLAM_C SINE Alu 1 128 -5 653 293 95 29 chr21 37847122 37847347 -7060223 - L1ME LINE L1 -2035 4505 4248 563 292 116 45 chr21 37847352 37847903 -7059667 - L1ME LINE L1 -2392 4148 3559 237 245 149 43 chr21 37847940 37848222 -7059348 - L1ME LINE L1 -3024 3516 3205 411 304 39 30 chr21 37848648 37848932 -7058638 - L1MEc LINE L1 -3918 2622 2327 225 0 0 0 chr21 37849058 37849083 -7058487 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 240 143 0 0 chr21 37849084 37849126 -7058444 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 892 158 6 6 chr21 37849127 37849304 -7058266 + CT-rich Low_complexity Low_complexity 4 180 0 438 339 95 21 chr21 37849510 37849932 -7057638 - HAL1 LINE L1 -825 1682 1230 476 203 45 30 chr21 37851551 37851684 -7055886 - MER103 DNA DNA -10 156 22 4433 179 29 18 chr21 37851933 37852818 -7054752 - L1MB3 LINE L1 -1 6182 5288 290 323 124 5 chr21 37853298 37853499 -7054071 + MIR SINE MIR 17 241 -21 200 122 73 0 chr21 37853703 37853744 -7053826 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 842 214 71 31 chr21 37854265 37854489 -7053081 - L1PB4 LINE L1 0 6156 5924 238 299 32 86 chr21 37854828 37855015 -7052555 - MIR SINE MIR -69 193 17 2205 108 0 10 chr21 37855030 37855326 -7052244 - AluSx SINE Alu -19 293 1 2661 166 9 0 chr21 37857140 37857603 -7049967 - MLT1C LTR MaLR 0 467 1 379 234 98 11 chr21 37860013 37860223 -7047347 + MER112 DNA MER1_type 1 249 -11 2296 107 0 3 chr21 37861491 37861791 -7045779 - AluSp SINE Alu -14 299 1 481 276 67 0 chr21 37862115 37862249 -7045321 + MIR SINE MIR 91 233 -29 226 265 94 86 chr21 37862351 37862596 -7044974 - LTR33 LTR ERVL -215 306 60 4199 113 44 58 chr21 37864124 37864899 -7042671 + LTR1 LTR ERV1 22 785 0 1277 68 11 0 chr21 37865300 37865476 -7042094 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2362 94 7 0 chr21 37865490 37865789 -7041781 - AluSg SINE Alu -9 301 1 381 270 18 9 chr21 37866105 37866216 -7041354 - MIR SINE MIR -111 151 40 376 209 78 35 chr21 37866719 37866759 -7040811 - L1M4 LINE L1 -1938 4208 4171 1867 155 27 17 chr21 37866759 37867056 -7040514 - AluJo SINE Alu -12 300 1 376 209 78 35 chr21 37867056 37867130 -7040440 - L1M4 LINE L1 -1975 4171 4089 27 0 0 0 chr21 37867365 37867392 -7040178 + AT_rich Low_complexity Low_complexity 1 27 0 180 320 136 0 chr21 37868377 37868480 -7039090 - L2 LINE L2 -222 3050 2934 1695 151 0 51 chr21 37868765 37869076 -7038494 + AluJo SINE Alu 1 295 -17 1257 144 0 0 chr21 37869268 37869456 -7038114 + AluSg/x SINE Alu 120 307 -3 440 168 215 40 chr21 37869944 37870093 -7037477 - MER4A LTR ERV1 0 465 291 1997 135 4 65 chr21 37870122 37870529 -7037041 - MER4A LTR ERV1 -235 357 1 322 291 221 24 chr21 37870693 37870906 -7036664 - MIR SINE MIR -6 256 2 1960 174 0 0 chr21 37872830 37873140 -7034430 + AluJb SINE Alu 1 310 -2 1111 157 5 51 chr21 37873462 37873659 -7033911 - AluJb SINE Alu -124 188 1 1298 233 50 14 chr21 37874702 37875063 -7032507 + MLT1A2 LTR MaLR 1 374 0 1000 174 53 156 chr21 37875478 37875969 -7031601 - MER31B LTR ERV1 -1 660 24 247 120 200 0 chr21 37876260 37876310 -7031260 + MLT1C LTR MaLR 22 81 -386 23 68 0 0 chr21 37876836 37876880 -7030690 + AT_rich Low_complexity Low_complexity 1 44 0 369 181 0 0 chr21 37877159 37877231 -7030339 + Charlie4a DNA MER1_type 63 134 -374 1679 210 64 5 chr21 37877232 37877655 -7029915 - MLT1C LTR MaLR 0 467 20 893 277 51 27 chr21 37877664 37878000 -7029570 + Charlie4a DNA MER1_type 140 483 -25 249 381 54 0 chr21 37878420 37878567 -7029003 - MIR SINE MIR -80 182 28 28 29 0 0 chr21 37878936 37878971 -7028599 + AT_rich Low_complexity Low_complexity 1 35 0 1341 206 136 3 chr21 37878974 37879334 -7028236 - L1ME3 LINE L1 -12 6150 5743 876 203 22 0 chr21 37879349 37879531 -7028039 + LTR41 LTR ERVL 8 193 -580 1232 241 30 56 chr21 37879567 37879998 -7027572 + LTR41 LTR ERVL 347 766 -7 659 228 52 33 chr21 37880008 37880219 -7027351 - L1ME3 LINE L1 -431 5731 5517 1098 167 46 0 chr21 37880219 37880393 -7027177 - AluSx SINE Alu -130 182 1 3753 148 19 3 chr21 37880393 37881028 -7026542 + Tigger1 DNA MER2_type 1774 2418 0 943 222 30 60 chr21 37881028 37881330 -7026240 - MLT2B1 LTR ERVL -51 469 177 424 99 0 86 chr21 37881591 37881672 -7025898 - MER69 DNA AcHobo 0 2526 2453 386 255 128 43 chr21 37882060 37882201 -7025369 - MER5A DNA MER1_type -18 171 19 197 347 32 0 chr21 37882379 37882474 -7025096 + L2 LINE L2 2947 3044 -228 2826 167 31 8 chr21 37883164 37883686 -7023884 + MLT2B3 LTR ERVL 1 534 -20 234 174 0 0 chr21 37883688 37883734 -7023836 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 300 172 0 31 chr21 37883750 37883814 -7023756 + MLT2C2 LTR ERVL 403 464 0 370 163 0 23 chr21 37884593 37884679 -7022891 + GA-rich Low_complexity Low_complexity 1 84 0 1687 181 7 29 chr21 37884971 37885280 -7022290 + AluJo SINE Alu 1 302 -10 265 237 13 40 chr21 37885595 37885671 -7021899 - MIR SINE MIR -112 150 77 196 198 135 62 chr21 37886228 37886324 -7021246 - MIR3 SINE MIR -2 206 104 331 295 24 60 chr21 37887760 37887926 -7019644 - MIR SINE MIR -90 172 13 261 57 0 0 chr21 37889450 37889485 -7018085 + (TCCCC)n Simple_repeat Simple_repeat 1 35 0 718 196 40 14 chr21 37889485 37889633 -7017937 - FRAM SINE Alu -8 168 17 458 294 19 38 chr21 37889683 37889843 -7017727 - MIR3 SINE MIR -11 197 41 416 330 11 38 chr21 37890017 37890202 -7017368 - MIR SINE MIR -37 225 46 2063 277 134 38 chr21 37890284 37892011 -7015559 + L2 LINE L2 1431 3313 0 2024 137 38 0 chr21 37892312 37892605 -7014965 - AluSx SINE Alu -8 304 1 293 319 44 30 chr21 37892919 37893054 -7014516 + L2 LINE L2 2624 2760 -554 568 267 55 51 chr21 37893859 37894076 -7013494 + MIR SINE MIR 44 261 -1 917 236 26 21 chr21 37894154 37894387 -7013183 + L1M3e LINE L1 1183 1416 -5614 686 270 88 14 chr21 37894742 37894957 -7012613 + MIR SINE MIR 31 261 -1 343 272 48 95 chr21 37895239 37895386 -7012184 - MIR3 SINE MIR -15 193 54 238 232 45 80 chr21 37895647 37895759 -7011811 - MIR SINE MIR -71 191 84 225 0 0 0 chr21 37896223 37896248 -7011322 + (TG)n Simple_repeat Simple_repeat 2 26 0 1011 171 41 6 chr21 37896917 37897270 -7010300 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr21 37897293 37897315 -7010255 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 37897982 37898013 -7009557 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr21 37898557 37898604 -7008966 + AT_rich Low_complexity Low_complexity 1 47 0 1360 189 65 28 chr21 37900080 37900403 -7007167 - MLT1B LTR MaLR -55 335 1 741 314 169 18 chr21 37900403 37901017 -7006553 + L2 LINE L2 2198 2904 -410 1777 195 19 0 chr21 37901088 37901452 -7006118 - MLT1B LTR MaLR -19 371 1 223 309 88 52 chr21 37901558 37901694 -7005876 + L2 LINE L2 3132 3272 0 271 276 13 0 chr21 37902535 37902611 -7004959 - MIR3 SINE MIR -7 201 125 2428 89 3 0 chr21 37902753 37903056 -7004514 + AluSx SINE Alu 1 304 -8 200 216 39 0 chr21 37903146 37903197 -7004373 - MIR SINE MIR -141 121 69 2227 122 0 0 chr21 37903494 37903790 -7003780 - AluSx SINE Alu -6 306 11 247 313 92 37 chr21 37903811 37904028 -7003542 - L2 LINE L2 -210 3062 2834 811 223 31 61 chr21 37904028 37904257 -7003313 + MLT1A1 LTR MaLR 1 222 -143 193 310 141 0 chr21 37904345 37904416 -7003154 + MIR SINE MIR 52 132 -76 753 241 83 18 chr21 37904594 37904822 -7002748 - MLT1E LTR MaLR 0 593 351 1227 254 14 35 chr21 37904914 37905261 -7002309 - MLT2C1 LTR ERVL -57 340 1 484 296 165 27 chr21 37905261 37905558 -7002012 - MLT1E LTR MaLR -233 360 23 561 30 0 0 chr21 37905820 37905887 -7001683 + (GA)n Simple_repeat Simple_repeat 1 67 0 882 66 79 21 chr21 37905948 37906277 -7001293 + (TCTA)n Simple_repeat Simple_repeat 1 348 0 4049 123 73 7 chr21 37906321 37906862 -7000708 + Tigger3b DNA MER2_type 1 607 -2421 2218 78 0 0 chr21 37906862 37907133 -7000437 + AluY SINE Alu 38 308 -3 4049 123 73 7 chr21 37907133 37907344 -7000226 + Tigger3b DNA MER2_type 607 803 -428 444 182 57 0 chr21 37907339 37907427 -7000143 + Tigger3b DNA MER2_type 1138 1230 -1 * 308 276 118 59 chr21 37907576 37907746 -6999824 + L1MC4a LINE L1 6058 6237 -1571 553 289 44 76 chr21 37907788 37908430 -6999140 + L1MC5 LINE L1 6293 6915 -1046 1661 199 0 7 chr21 37908430 37908745 -6998825 + AluJb SINE Alu 1 313 0 553 289 44 76 chr21 37908745 37908904 -6998666 + L1MC5 LINE L1 6915 7078 -883 749 235 87 6 chr21 37908911 37909094 -6998476 + MER58A DNA MER1_type 1 198 -26 21 0 0 0 chr21 37909150 37909171 -6998399 + AT_rich Low_complexity Low_complexity 1 21 0 458 76 0 0 chr21 37909171 37909237 -6998333 - L1MA3 LINE L1 0 6305 6240 1892 233 52 71 chr21 37909238 37909422 -6998148 + L1MC5 LINE L1 7103 7289 -672 2342 102 51 23 chr21 37909422 37909776 -6997794 - THE1B LTR MaLR 0 364 1 1892 233 52 71 chr21 37909776 37910405 -6997165 + L1MC5 LINE L1 7289 7900 -61 1734 196 54 52 chr21 37910405 37910542 -6997028 - MLT1D LTR MaLR 0 505 370 1544 196 125 3 chr21 37910542 37910894 -6996676 - MSTD LTR MaLR 0 396 2 1734 196 54 52 chr21 37910894 37911260 -6996310 - MLT1D LTR MaLR -135 370 1 193 345 41 64 chr21 37911678 37911849 -6995721 - MIR SINE MIR -62 200 34 300 259 36 49 chr21 37912120 37912305 -6995265 + MLT1J1 LTR MaLR 24 205 -204 283 244 0 23 chr21 37913463 37913549 -6994021 + MLT1I LTR MaLR 324 407 -2 1174 244 226 33 chr21 37913718 37914448 -6993122 - HAL1 LINE L1 -5 2502 1632 3202 135 8 2 chr21 37915307 37915812 -6991758 - L1MA4A LINE L1 -4 6299 5792 324 0 0 0 chr21 37915812 37915848 -6991722 + (TA)n Simple_repeat Simple_repeat 1 36 0 1180 50 19 19 chr21 37915958 37916279 -6991291 + (TCTA)n Simple_repeat Simple_repeat 1 321 0 872 198 29 0 chr21 37916477 37916649 -6990921 - MER5B DNA MER1_type -1 177 1 5267 140 32 13 chr21 37916785 37917654 -6989916 - L1MC1 LINE L1 -6 6327 5442 4088 121 5 31 chr21 37917680 37917773 -6989797 - L1PA15 LINE L1 -6 6159 6065 2113 63 80 31 chr21 37917773 37918060 -6989510 + AluSg SINE Alu 1 301 -9 4088 121 5 31 chr21 37918060 37918620 -6988950 - L1PA15 LINE L1 -100 6065 5523 871 299 65 10 chr21 37918959 37919373 -6988197 - L1ME3 LINE L1 -325 5906 5470 374 317 12 0 chr21 37919440 37919601 -6987969 - L1ME3 LINE L1 -3039 3176 3014 737 280 123 18 chr21 37919691 37920211 -6987359 - L1ME3 LINE L1 -3546 2669 2133 422 255 164 17 chr21 37920485 37920761 -6986809 - L1MEc LINE L1 -851 1725 1349 229 266 101 19 chr21 37920826 37920984 -6986586 - L1MEc LINE L1 -5326 879 709 929 202 56 0 chr21 37921550 37921748 -6985822 + MER3 DNA MER1_type 1 209 0 33 43 0 0 chr21 37921921 37921968 -6985602 + AT_rich Low_complexity Low_complexity 1 47 0 772 183 0 0 chr21 37921973 37922099 -6985471 - FRAM SINE Alu -22 154 29 297 226 36 80 chr21 37923074 37923211 -6984359 + LTR67 LTR ERVL 410 540 -17 2284 112 0 10 chr21 37923562 37923874 -6983696 - AluSg SINE Alu -1 309 1 1078 251 77 50 chr21 37923983 37924461 -6983109 + L1ME3A LINE L1 5669 6162 -8 1801 158 10 7 chr21 37925028 37925320 -6982250 + AluJb SINE Alu 1 293 -19 1651 199 8 20 chr21 37925424 37925780 -6981790 - MLT1A1 LTR MaLR -7 358 7 339 216 196 27 chr21 37926042 37926190 -6981380 - MER5B DNA MER1_type -1 177 5 748 117 44 73 chr21 37926613 37926750 -6980820 - FLAM_C SINE Alu 0 133 1 512 213 63 16 chr21 37926822 37926949 -6980621 + MER105 DNA DNA 54 186 -18 1217 143 11 0 chr21 37926949 37927138 -6980432 - AluSg/x SINE Alu -12 300 110 275 232 32 15 chr21 37927284 37927392 -6980178 + MLT1J LTR MaLR 87 261 -331 240 111 0 0 chr21 37927626 37927662 -6979908 + (A)n Simple_repeat Simple_repeat 1 36 0 619 208 164 16 chr21 37927921 37928104 -6979466 + MER63A DNA MER1_type 1 210 0 2052 128 9 50 chr21 37929152 37929167 -6978403 + MSTD LTR MaLR 3 17 -379 2187 127 140 8 chr21 37929167 37929545 -6978025 + MSTA LTR MaLR 1 428 0 2052 128 9 50 chr21 37929545 37929872 -6977698 + MSTD LTR MaLR 17 331 -65 5722 50 3 0 chr21 37929923 37930621 -6976949 - L1PA7 LINE L1 0 6154 5455 3128 87 48 0 chr21 37930623 37931162 -6976408 + L1P3 LINE L1 704 1307 -5154 377 176 14 0 chr21 37931162 37931246 -6976324 + MSTB2 LTR MaLR 301 446 -11 964 230 49 11 chr21 37931509 37931774 -6975796 + L1ME2 LINE L1 5667 5941 -223 180 0 0 0 chr21 37931836 37931856 -6975714 + (A)n Simple_repeat Simple_repeat 1 20 0 441 148 0 25 chr21 37932284 37932365 -6975205 - L1P4 LINE L1 -443 5723 5645 294 146 0 0 chr21 37932354 37932402 -6975168 + L1PA16 LINE L1 5939 5986 -180 * 290 163 0 0 chr21 37932402 37932445 -6975125 - LTR8A LTR ERV1 0 727 685 4516 136 16 14 chr21 37932446 37933154 -6974416 - MER50 LTR ERV1 -23 711 3 926 87 47 0 chr21 37933154 37933281 -6974289 - MER50-int LTR ERV1 -4 7201 7069 2583 133 64 16 chr21 37933281 37933732 -6973838 - LTR8A LTR ERV1 -254 473 1 966 129 74 0 chr21 37933732 37933895 -6973675 + L1PA16 LINE L1 5983 6157 -9 495 313 29 21 chr21 37933908 37934148 -6973422 + MIR SINE MIR 20 261 -1 31 0 0 0 chr21 37934238 37934269 -6973301 + AT_rich Low_complexity Low_complexity 1 31 0 2947 86 2 1 chr21 37935534 37936025 -6971545 - MER41A LTR ERV1 0 554 1 383 294 74 12 chr21 37936411 37936574 -6970996 - MIR SINE MIR -31 231 59 870 281 29 18 chr21 37936773 37937051 -6970519 - LTR16A LTR ERVL -7 443 163 2247 96 3 7 chr21 37937548 37937840 -6969730 - AluSc SINE Alu -14 295 5 2172 304 100 34 chr21 37938124 37940474 -6967096 - ERVL LTR ERVL -1003 4761 2150 1919 187 80 16 chr21 37940474 37940912 -6966658 - MLT1C LTR MaLR 0 467 2 2172 304 100 34 chr21 37940912 37941014 -6966556 - ERVL LTR ERVL -3614 2150 2056 348 113 0 50 chr21 37941019 37941099 -6966471 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1948 168 0 3 chr21 37941121 37941430 -6966140 - AluJb SINE Alu -4 308 1 253 267 17 50 chr21 37941580 37941700 -6965870 - L2 LINE L2 -1 3312 3197 11292 171 6 4 chr21 37942350 37945153 -6962417 - L1PA14 LINE L1 0 6161 3359 714 180 0 0 chr21 37945171 37945299 -6962271 - FLAM_A SINE Alu -1 141 14 382 221 107 46 chr21 37945301 37945432 -6962138 + L2 LINE L2 3175 3313 0 719 127 0 63 chr21 37945992 37946062 -6961508 - L1MC3 LINE L1 0 7785 7727 1948 137 0 111 chr21 37946062 37946441 -6961129 - MER1B DNA MER1_type 0 337 1 719 127 0 63 chr21 37946441 37946512 -6961058 - L1MC3 LINE L1 -58 7727 7653 1979 161 25 18 chr21 37946512 37946909 -6960661 + L1MC3 LINE L1 7379 7778 -7 257 246 84 42 chr21 37947228 37947370 -6960200 + MIR SINE MIR 83 230 -32 1067 193 65 35 chr21 37947391 37947681 -6959889 - MLT2C1 LTR ERVL -95 302 4 540 158 0 0 chr21 37947685 37947799 -6959771 + CT-rich Low_complexity Low_complexity 1 114 0 192 77 0 0 chr21 37947801 37947827 -6959743 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 730 290 28 0 chr21 37947919 37948133 -6959437 - MER58A DNA MER1_type -4 220 1 854 266 173 0 chr21 37948313 37948655 -6958915 + MLT1I LTR MaLR 9 409 0 380 285 41 0 chr21 37948732 37948855 -6958715 + L2 LINE L2 3095 3222 -91 203 224 20 0 chr21 37948944 37948993 -6958577 - MIR SINE MIR -76 186 137 1795 239 102 29 chr21 37949031 37949578 -6957992 - MLT1E LTR MaLR 0 593 7 566 162 0 3 chr21 37949880 37950148 -6957422 + AluSx SINE Alu 1 349 0 361 214 191 95 chr21 37950268 37950379 -6957191 + MLT1J LTR MaLR 91 190 -321 2288 96 53 31 chr21 37950379 37950735 -6956835 + THE1B LTR MaLR 1 364 0 361 214 191 95 chr21 37950735 37950875 -6956695 + MLT1J LTR MaLR 190 366 -145 1222 326 102 36 chr21 37952500 37953361 -6954209 + ERVL LTR ERVL 4073 5029 -664 1883 214 59 14 chr21 37954157 37954596 -6952974 + MLT1C LTR MaLR 1 459 -8 321 250 147 0 chr21 37954817 37954953 -6952617 - MIR SINE MIR -12 250 95 746 239 215 48 chr21 37955059 37955477 -6952093 - MLT1J LTR MaLR 0 511 24 1102 204 44 101 chr21 37955994 37956489 -6951081 - MLT1C LTR MaLR 0 467 1 1044 233 117 69 chr21 37957411 37957921 -6949649 + MLT1E1 LTR MaLR 51 652 -2 1122 220 63 73 chr21 37957956 37958285 -6949285 + MLT1G1 LTR MaLR 154 568 -27 274 306 57 8 chr21 37958568 37958692 -6948878 + L1ME4a LINE L1 5474 5603 -518 2138 136 0 13 chr21 37958759 37959075 -6948495 + AluJb SINE Alu 1 312 0 288 252 36 91 chr21 37959151 37959425 -6948145 + L1ME4a LINE L1 5684 5942 -179 1500 189 58 104 chr21 37959602 37960084 -6947486 - MLT1C LTR MaLR -2 465 6 2361 98 0 0 chr21 37960158 37960454 -6947116 + AluSg SINE Alu 1 296 -14 324 0 0 0 chr21 37960455 37960491 -6947079 + (CA)n Simple_repeat Simple_repeat 2 37 0 669 167 27 53 chr21 37960499 37960672 -6946898 - L1MC1 LINE L1 -269 6064 5894 2080 145 0 10 chr21 37960886 37961182 -6946388 - AluSx SINE Alu -19 293 1 317 274 24 24 chr21 37961221 37961345 -6946225 + L1ME4a LINE L1 5995 6118 -3 844 221 111 10 chr21 37961590 37961888 -6945682 - LTR37A LTR ERV1 0 426 99 225 0 0 0 chr21 37962448 37962473 -6945097 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 408 18 0 35 chr21 37962529 37962586 -6944984 + L1PA6 LINE L1 6097 6151 -3 1704 191 80 74 chr21 37963223 37963725 -6943845 - MER21B LTR ERV1 -14 849 345 1328 170 167 48 chr21 37963726 37964061 -6943509 - MER21A LTR ERV1 -545 386 12 720 235 38 102 chr21 37964096 37964125 -6943445 - MER34 LTR ERV1 -20 522 493 2065 145 14 22 chr21 37964125 37964483 -6943087 - THE1A LTR MaLR 0 355 1 720 235 38 102 chr21 37964483 37964904 -6942666 - MER34 LTR ERV1 -49 493 101 1815 118 0 121 chr21 37964907 37965245 -6942325 - AluSq SINE Alu -6 297 1 2497 67 15 30 chr21 37965279 37965610 -6941960 - LTR17 LTR ERV1 -454 326 1 2380 67 3 3 chr21 37965610 37965908 -6941662 - HERV17 LTR ERV1 0 8626 8329 50302 50 7 5 chr21 37965918 37971923 -6935647 - HERV17 LTR ERV1 -2610 6016 1 3905 56 42 31 chr21 37971923 37972441 -6935129 - LTR17 LTR ERV1 0 780 257 441 206 10 10 chr21 37972451 37972553 -6935017 - MER34C LTR ERV1 -453 132 31 222 196 0 36 chr21 37972797 37972853 -6934717 + (TTA)n Simple_repeat Simple_repeat 2 55 0 2007 133 32 6 chr21 37973097 37973443 -6934127 - THE1A LTR MaLR 0 355 1 1256 214 50 84 chr21 37974094 37974324 -6933246 - MLT1A2 LTR MaLR -2 372 159 2058 110 0 0 chr21 37974324 37974596 -6932974 - AluSg SINE Alu 0 310 39 1256 214 50 84 chr21 37974596 37974748 -6932822 - MLT1A2 LTR MaLR -215 159 3 2367 100 0 0 chr21 37975247 37975546 -6932024 - AluSx SINE Alu -13 299 1 4156 89 30 83 chr21 37975546 37976222 -6931348 - MER4A LTR ERV1 -24 640 1 1120 151 0 0 chr21 37976396 37976562 -6931008 + FRAM SINE Alu 2 167 -9 478 154 0 0 chr21 37977704 37977782 -6929788 - L1PB4 LINE L1 -7 6149 6072 6108 134 25 6 chr21 37978066 37979484 -6928086 - L1PB2 LINE L1 -7 6860 5414 2788 155 72 25 chr21 37979473 37980391 -6927179 - L1PB2 LINE L1 -3460 3402 2436 * 2490 74 0 3 chr21 37981340 37981639 -6925931 + AluY SINE Alu 1 298 -13 2021 86 60 11 chr21 37981857 37982161 -6925409 + AluSx SINE Alu 1 317 0 582 302 85 37 chr21 37982956 37983357 -6924213 + L2 LINE L2 2808 3227 -86 612 192 19 51 chr21 37983490 37983612 -6923958 - MER5A DNA MER1_type 0 189 72 2275 107 13 0 chr21 37983612 37983910 -6923660 - AluSx SINE Alu -8 304 3 612 192 19 51 chr21 37983910 37983943 -6923627 - MER5A DNA MER1_type -117 72 39 188 269 7 101 chr21 37984429 37984578 -6922992 + L2 LINE L2 2933 3067 -205 665 239 132 19 chr21 37984912 37985125 -6922445 - L1ME3A LINE L1 -10 6160 5924 254 315 74 0 chr21 37985174 37985282 -6922288 - MER112 DNA MER1_type -64 196 81 2236 110 0 3 chr21 37985620 37985920 -6921650 + AluY SINE Alu 1 299 -12 345 360 22 7 chr21 37986248 37986384 -6921186 - L2 LINE L2 -1 3271 3134 2286 93 0 3 chr21 37986614 37986905 -6920665 - AluSc SINE Alu -19 290 1 3274 187 17 22 chr21 37986985 37987688 -6919882 + L1M LINE L1 4685 5379 -786 1711 205 3 0 chr21 37987700 37988003 -6919567 - AluJo SINE Alu -8 304 1 3335 143 141 29 chr21 37988208 37988908 -6918662 - MER4E LTR ERV1 0 779 1 2130 115 3 0 chr21 37990388 37990675 -6916895 - AluSx SINE Alu -24 288 1 1267 189 73 55 chr21 37990996 37991340 -6916230 - MLT1C LTR MaLR -112 355 6 259 273 15 0 chr21 37992054 37992120 -6915450 + CT-rich Low_complexity Low_complexity 4 70 0 275 272 12 12 chr21 37992199 37992280 -6915290 + CT-rich Low_complexity Low_complexity 2 82 0 222 231 26 51 chr21 37993269 37993347 -6914223 + MIR SINE MIR 116 191 -71 389 306 196 5 chr21 37993420 37993639 -6913931 + MIR SINE MIR 2 262 0 607 208 14 56 chr21 37994901 37995045 -6912525 + Charlie1 DNA MER1_type 16 153 -2608 2878 171 89 9 chr21 37995049 37995229 -6912341 + Charlie1 DNA MER1_type 2080 2244 -517 2036 125 30 0 chr21 37995229 37995533 -6912037 + AluSq SINE Alu 1 313 0 2878 171 89 9 chr21 37995533 37995984 -6911586 + Charlie1 DNA MER1_type 2244 2761 0 229 381 36 22 chr21 37995984 37996123 -6911447 - MIR3 SINE MIR -48 160 20 210 71 0 0 chr21 37996866 37996894 -6910676 + (A)n Simple_repeat Simple_repeat 1 28 0 306 241 35 0 chr21 37997924 37998011 -6909559 - MIR SINE MIR -65 143 54 333 321 58 16 chr21 37998129 37998319 -6909251 - MIR SINE MIR -1 261 64 1184 168 91 0 chr21 37998429 37998661 -6908909 - MLT1C LTR MaLR -10 457 205 257 253 48 12 chr21 37998662 37998745 -6908825 - L1MC4 LINE L1 -450 7592 7507 1581 251 108 45 chr21 37998757 37999016 -6908554 - L1MC4 LINE L1 -518 7524 7283 2442 109 0 0 chr21 37999016 37999355 -6908215 - L1PA13 LINE L1 -11 6152 5814 1581 251 108 45 chr21 37999355 37999760 -6907810 - L1MC4 LINE L1 -759 7283 6818 267 240 43 53 chr21 38000890 38000992 -6906578 + MIR SINE MIR 58 155 -59 364 314 23 34 chr21 38000996 38001171 -6906399 - MER5B DNA MER1_type -5 173 1 461 175 10 19 chr21 38001234 38001337 -6906233 + MIR SINE MIR 25 126 -136 215 214 36 0 chr21 38002209 38002265 -6905305 + (TA)n Simple_repeat Simple_repeat 2 59 0 203 274 0 0 chr21 38003344 38003395 -6904175 + MER5A DNA MER1_type 2 52 -137 185 289 22 33 chr21 38003410 38003500 -6904070 - MER5A DNA MER1_type -83 106 18 502 143 286 17 chr21 38004228 38004347 -6903223 + MER3 DNA MER1_type 19 122 -87 225 234 0 0 chr21 38005263 38005327 -6902243 + (CTG)n Simple_repeat Simple_repeat 1 64 0 4281 166 11 4 chr21 38005475 38006220 -6901350 + L1MA7 LINE L1 5528 6277 -14 229 265 0 48 chr21 38007024 38007107 -6900463 - MIR SINE MIR 0 262 184 3064 209 25 34 chr21 38007211 38007918 -6899652 - L1MC4 LINE L1 -1846 5962 5262 619 295 43 62 chr21 38007947 38008320 -6899250 - L1MC4 LINE L1 -1076 5070 4705 1647 132 46 4 chr21 38008382 38008662 -6898908 - L1MB3 LINE L1 -7 6176 5885 5661 152 23 28 chr21 38008663 38010122 -6897448 - L1MA5 LINE L1 -44 6256 4803 217 250 88 0 chr21 38010489 38010557 -6897013 + MIR SINE MIR 120 193 -69 1301 47 0 23 chr21 38011072 38011243 -6896327 - L1PA4 LINE L1 0 6155 5989 741 34 0 0 chr21 38011243 38011331 -6896239 + L1P LINE L1 5034 5121 -1025 * 5062 27 0 0 chr21 38011326 38011916 -6895654 - L1PA3 LINE L1 -1227 4919 4330 7788 27 6 0 chr21 38011916 38013152 -6894418 + L1PA3 LINE L1 4915 6155 0 368 23 0 0 chr21 38013153 38013197 -6894373 + L1P LINE L1 5110 5153 -993 180 0 0 0 chr21 38013588 38013608 -6893962 + (T)n Simple_repeat Simple_repeat 1 20 0 215 252 70 52 chr21 38013715 38013830 -6893740 + MIR SINE MIR 132 248 -14 22 0 0 0 chr21 38015622 38015644 -6891926 + AT_rich Low_complexity Low_complexity 1 22 0 320 316 82 55 chr21 38015672 38015963 -6891607 - L1ME4a LINE L1 -16 6105 5807 1278 255 78 75 chr21 38015992 38016414 -6891156 - L1ME3A LINE L1 -31 6139 5720 1714 171 7 13 chr21 38016414 38016723 -6890847 + AluJb SINE Alu 1 307 -5 1278 255 78 75 chr21 38016723 38016800 -6890770 - L1ME3A LINE L1 -450 5720 5645 1476 175 106 31 chr21 38016800 38017120 -6890450 - MER2 DNA MER2_type 0 344 1 1278 255 78 75 chr21 38017120 38017234 -6890336 - L1ME3A LINE L1 -525 5645 5523 463 298 89 8 chr21 38017248 38017483 -6890087 - L1ME4a LINE L1 -303 5818 5565 1146 225 0 67 chr21 38017524 38017764 -6889806 - MER58A DNA MER1_type 0 224 1 1514 67 0 0 chr21 38018393 38018573 -6888997 + L1PA5 LINE L1 5970 6149 -5 729 285 25 8 chr21 38020199 38020434 -6887136 - L2 LINE L2 -833 2481 2243 2293 110 0 0 chr21 38023257 38023558 -6884012 - AluSx SINE Alu -11 301 1 1698 174 3 17 chr21 38023566 38023860 -6883710 - AluJo SINE Alu -22 290 1 451 243 101 7 chr21 38025384 38025532 -6882038 + MER5A DNA MER1_type 1 162 -27 2519 127 34 6 chr21 38028736 38029090 -6878480 - THE1B LTR MaLR 0 364 1 932 194 71 10 chr21 38030108 38030304 -6877266 - MER3 DNA MER1_type 0 209 2 1845 139 38 7 chr21 38030955 38031243 -6876327 + AluSx SINE Alu 1 297 -15 429 297 51 15 chr21 38031620 38031815 -6875755 - LTR33 LTR ERVL -305 216 15 3588 129 87 31 chr21 38031967 38032314 -6875256 - MER39B LTR ERV1 0 653 327 5623 43 0 0 chr21 38032314 38032945 -6874625 - L1PA5 LINE L1 0 6154 5524 3588 129 87 31 chr21 38032945 38033215 -6874355 - MER39B LTR ERV1 -326 327 1 402 21 0 0 chr21 38033359 38033406 -6874164 + (CA)n Simple_repeat Simple_repeat 1 47 0 1421 121 52 9 chr21 38033965 38034197 -6873373 + MSTB-int LTR MaLR 1410 1651 0 2428 156 23 44 chr21 38034197 38034632 -6872938 + MSTB LTR MaLR 1 426 0 240 238 12 24 chr21 38034703 38034871 -6872699 + (TG)n Simple_repeat Simple_repeat 1 166 0 265 273 0 13 chr21 38034884 38034961 -6872609 + (TG)n Simple_repeat Simple_repeat 1 76 0 306 242 13 6 chr21 38034977 38035134 -6872436 + (TG)n Simple_repeat Simple_repeat 1 158 0 1793 204 27 6 chr21 38035176 38035510 -6872060 + MER58B DNA MER1_type 1 341 0 2356 101 3 0 chr21 38035735 38036041 -6871529 + AluSq SINE Alu 1 307 -6 387 243 58 43 chr21 38036229 38036362 -6871208 + MLT2E LTR ERVL 520 628 0 180 97 0 0 chr21 38036829 38036860 -6870710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 282 222 48 0 chr21 38036963 38037026 -6870544 + MIR SINE MIR 76 141 -67 351 305 23 23 chr21 38037144 38037321 -6870249 + MER20B DNA MER1_type 182 358 -425 991 240 108 36 chr21 38037378 38037765 -6869805 + MER20B DNA MER1_type 345 759 -24 474 268 78 22 chr21 38038131 38038310 -6869260 + L1MCc LINE L1 18 206 -6217 331 316 84 7 chr21 38038316 38038471 -6869099 + L1MCc LINE L1 337 503 -5920 2434 158 59 5 chr21 38038674 38039078 -6868492 - MSTB LTR MaLR 0 426 1 1458 198 90 88 chr21 38039203 38039739 -6867831 + MER34C LTR ERV1 36 572 -13 797 276 73 42 chr21 38039754 38040050 -6867520 + L1MCc LINE L1 847 1157 -5266 2087 136 84 27 chr21 38040050 38040419 -6867151 - MLT1B LTR MaLR 0 390 1 797 276 73 42 chr21 38040419 38040480 -6867090 + L1MCc LINE L1 1157 1215 -5208 328 306 92 10 chr21 38040554 38040750 -6866820 - L1ME LINE L1 -301 5820 5609 1525 238 18 27 chr21 38040754 38041126 -6866444 + MLT1A2 LTR MaLR 1 464 -3 1032 208 50 92 chr21 38042248 38042488 -6865082 - MSTD LTR MaLR 0 396 196 862 204 93 35 chr21 38042497 38042723 -6864847 - MSTD LTR MaLR -157 239 1 1565 99 107 4 chr21 38043210 38043443 -6864127 + THE1B LTR MaLR 1 257 -107 984 336 66 16 chr21 38045067 38045508 -6862062 + L2 LINE L2 73 535 -2779 1817 205 29 79 chr21 38045531 38045567 -6862003 - MLT2B1 LTR ERVL -4 516 480 1109 20 26 0 chr21 38045567 38045719 -6861851 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 1817 205 29 79 chr21 38045719 38046164 -6861406 - MLT2B1 LTR ERVL -40 480 59 317 155 0 43 chr21 38046211 38046284 -6861286 - MLT2D LTR ERVL -353 61 2 309 264 31 62 chr21 38046501 38046630 -6860940 - LTR68 LTR ERV1 -286 454 330 329 296 47 59 chr21 38046786 38046872 -6860698 - LTR68 LTR ERV1 -567 173 88 2243 89 0 10 chr21 38046872 38047174 -6860396 - AluY SINE Alu -11 300 2 329 296 47 59 chr21 38047174 38047256 -6860314 - LTR68 LTR ERV1 -652 88 7 1076 284 114 53 chr21 38047284 38047968 -6859602 + L2 LINE L2 641 1366 -1948 352 307 36 7 chr21 38048155 38048295 -6859275 - MLT1I LTR MaLR -263 146 3 2780 283 116 41 chr21 38048297 38049361 -6858209 + L2 LINE L2 1379 2361 -952 2247 236 112 16 chr21 38049361 38049932 -6857638 + MLT1E2 LTR MaLR 1 626 0 2780 283 116 41 chr21 38049932 38050022 -6857548 + L2 LINE L2 2361 2443 -870 432 0 0 0 chr21 38050022 38050070 -6857500 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1932 150 0 0 chr21 38050072 38050352 -6857218 - AluSx SINE Alu -32 280 1 2780 283 116 41 chr21 38050352 38050990 -6856580 + L2 LINE L2 2443 3309 -4 205 225 225 0 chr21 38051889 38051960 -6855610 - L2 LINE L2 -17 3255 3169 * 430 250 72 22 chr21 38051947 38052127 -6855443 + L2 LINE L2 1809 1997 -1317 2272 140 9 0 chr21 38052137 38052487 -6855083 - L1PB1 LINE L1 0 6151 5799 269 173 12 25 chr21 38052487 38052568 -6855002 + LTR66 LTR ERVL 383 462 -148 11621 189 12 69 chr21 38052568 38056561 -6851009 - L1P5 LINE L1 -361 6506 2765 239 100 100 0 chr21 38056567 38056607 -6850963 - L1P5 LINE L1 -4251 2612 2569 * 1506 121 34 0 chr21 38056602 38056867 -6850703 - L1P5 LINE L1 -4743 2120 1847 1254 320 154 18 chr21 38056867 38057803 -6849767 + L2 LINE L2 1979 3052 -261 429 290 23 8 chr21 38057812 38057943 -6849627 - MIR SINE MIR -129 133 1 1671 193 72 28 chr21 38058690 38059121 -6848449 + MLT1C LTR MaLR 18 467 0 724 282 8 23 chr21 38059414 38059680 -6847890 - L1MC4a LINE L1 -1866 5942 5681 367 194 30 0 chr21 38059680 38059747 -6847823 - Tigger5 DNA MER2_type -1 2322 2254 305 182 18 0 chr21 38059719 38059774 -6847796 - Tigger5 DNA MER2_type -2267 56 1 * 4758 162 28 22 chr21 38059875 38060609 -6846961 - L1MB3 LINE L1 -4 6179 5436 1505 204 63 14 chr21 38060609 38060802 -6846768 - MLT1A1 LTR MaLR 0 365 146 549 55 0 0 chr21 38060802 38060875 -6846695 + (GA)n Simple_repeat Simple_repeat 1 73 0 1505 204 63 14 chr21 38060875 38061029 -6846541 - MLT1A1 LTR MaLR -219 146 1 4758 162 28 22 chr21 38061029 38061213 -6846357 - L1MB3 LINE L1 -747 5436 5255 241 279 135 0 chr21 38061984 38062088 -6845482 - MER117 DNA MER1_type -49 148 31 273 374 0 0 chr21 38062410 38062501 -6845069 + L2 LINE L2 3180 3270 -2 215 285 100 100 chr21 38062639 38062839 -6844731 - L2 LINE L2 0 3272 3073 21 36 0 0 chr21 38063391 38063419 -6844151 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr21 38064609 38064636 -6842934 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1227 260 110 73 chr21 38064651 38065515 -6842055 + L1MC4 LINE L1 7140 8035 -7 1222 176 5 0 chr21 38068064 38068274 -6839296 - AluJb SINE Alu -15 297 87 447 214 202 117 chr21 38068284 38068625 -6838945 - L1MC4a LINE L1 -1862 5946 5577 213 284 15 0 chr21 38069742 38069809 -6837761 + GA-rich Low_complexity Low_complexity 4 71 0 1440 158 147 8 chr21 38070057 38070322 -6837248 + AluJo SINE Alu 1 302 0 249 260 82 14 chr21 38070482 38070555 -6837015 - L2 LINE L2 -20 3252 3175 2119 130 0 9 chr21 38070683 38070998 -6836572 + AluSq SINE Alu 1 312 -1 184 182 0 91 chr21 38073331 38073375 -6834195 - L2 LINE L2 -17 3255 3216 252 229 57 0 chr21 38073377 38073447 -6834123 + MER116 DNA Mariner 7 80 0 283 296 56 40 chr21 38073456 38073581 -6833989 - MIR SINE MIR -71 191 65 187 224 20 41 chr21 38073624 38073673 -6833897 + MIR3 SINE MIR 112 159 -49 599 120 9 0 chr21 38075535 38075643 -6831927 + (TG)n Simple_repeat Simple_repeat 1 109 0 962 217 81 16 chr21 38075831 38076239 -6831331 + MLT1D LTR MaLR 20 505 0 358 235 25 0 chr21 38078125 38078198 -6829372 + MER67A LTR ERV1 6 80 -463 1289 228 105 25 chr21 38078198 38078705 -6828865 + MER67B LTR ERV1 1 418 -243 586 242 65 30 chr21 38078674 38078905 -6828665 + MER67A LTR ERV1 273 539 0 * 325 197 16 0 chr21 38079138 38079199 -6828371 + AluSg SINE Alu 58 119 -181 1921 153 0 6 chr21 38079843 38080157 -6827413 - AluJb SINE Alu 0 312 1 357 183 16 8 chr21 38081520 38081604 -6825966 - Alu SINE Alu -2 300 245 825 272 122 40 chr21 38081621 38082177 -6825393 - L1MEc LINE L1 -5478 918 317 315 364 49 0 chr21 38082351 38082513 -6825057 - HERV16 LTR ERVL -1240 4414 4245 317 343 0 0 chr21 38082515 38082620 -6824950 - HERV16 LTR ERVL -2416 2580 2476 * 854 327 26 17 chr21 38082615 38082964 -6824606 - HERV16 LTR ERVL -3258 2506 2155 1100 283 38 4 chr21 38082997 38083328 -6824242 - HERV16 LTR ERVL -3055 1941 1666 738 165 9 178 chr21 38083370 38083451 -6824119 - MER20 DNA MER1_type 0 219 126 2412 110 41 8 chr21 38083451 38083814 -6823756 - THE1C LTR MaLR 0 375 1 10560 122 31 5 chr21 38083816 38085353 -6822217 - THE1C-int LTR MaLR -2 1578 1 2409 110 44 14 chr21 38085353 38085717 -6821853 - THE1C LTR MaLR 0 375 1 738 165 9 178 chr21 38085717 38085861 -6821709 - MER20 DNA MER1_type -92 127 29 2062 315 79 47 chr21 38085919 38087441 -6820129 - HERV16 LTR ERVL -3420 1576 7 568 286 51 26 chr21 38087449 38087683 -6819887 - LTR16A LTR ERVL -5 445 206 1535 208 80 6 chr21 38087880 38088241 -6819329 - MLT1B LTR MaLR -1 389 2 248 224 0 0 chr21 38088869 38088918 -6818652 + GA-rich Low_complexity Low_complexity 2 50 0 198 277 78 139 chr21 38089360 38089526 -6818044 - L2 LINE L2 0 3313 3158 209 360 18 18 chr21 38090340 38090454 -6817116 - MIR SINE MIR -121 141 28 2167 165 13 10 chr21 38091144 38091532 -6816038 - MLT1B LTR MaLR 0 390 2 21 36 0 0 chr21 38092180 38092208 -6815362 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 38092226 38092249 -6815321 + AT_rich Low_complexity Low_complexity 1 23 0 344 94 0 62 chr21 38093264 38093328 -6814242 - FAM SINE Alu -1 174 120 646 303 41 14 chr21 38094696 38094914 -6812656 - MIR SINE MIR 0 262 39 203 310 0 0 chr21 38094970 38095028 -6812542 + GA-rich Low_complexity Low_complexity 2 59 0 2117 116 0 0 chr21 38098100 38098401 -6809169 - AluSx SINE Alu -11 301 1 43 47 0 0 chr21 38099506 38099570 -6808000 + AT_rich Low_complexity Low_complexity 1 64 0 384 182 172 10 chr21 38100884 38100983 -6806587 - Tigger7 DNA MER2_type 0 2487 2373 * 1250 193 58 27 chr21 38100966 38101225 -6806345 - Tigger7 DNA MER2_type -466 267 1 301 288 106 40 chr21 38101949 38102175 -6805395 - Charlie7 DNA MER1_type -1971 641 401 25 31 0 0 chr21 38102187 38102219 -6805351 + AT_rich Low_complexity Low_complexity 1 32 0 1718 185 19 0 chr21 38102219 38102543 -6805027 - L1MB2 LINE L1 -10 6161 5832 593 239 32 37 chr21 38102560 38102849 -6804721 - Charlie7 DNA MER1_type -2214 398 67 351 341 39 0 chr21 38102849 38102978 -6804592 + MER91C DNA MER1_type 7 140 0 206 244 215 22 chr21 38103053 38103188 -6804382 - MIR3 SINE MIR -6 202 42 1890 135 0 31 chr21 38103511 38103829 -6803741 + AluJb SINE Alu 5 312 0 1977 138 3 3 chr21 38105080 38105392 -6802178 - AluSq SINE Alu -1 312 1 672 221 41 6 chr21 38105923 38106095 -6801475 - MER45A DNA AcHobo 0 178 1 355 287 23 0 chr21 38106203 38106290 -6801280 - L1MC4 LINE L1 -1340 6702 6614 351 212 0 0 chr21 38106530 38106615 -6800955 + (TG)n Simple_repeat Simple_repeat 2 86 0 347 270 7 61 chr21 38107982 38108130 -6799440 + MIR SINE MIR 37 176 -86 578 280 45 0 chr21 38110023 38110180 -6797390 - MIR SINE MIR -66 196 33 480 262 66 66 chr21 38110202 38110280 -6797290 - L1ME1 LINE L1 -5 6161 6084 2163 106 3 0 chr21 38110280 38110581 -6796989 - AluSp SINE Alu -11 302 1 480 262 66 66 chr21 38110581 38110617 -6796953 - L1ME1 LINE L1 -82 6084 6049 2015 112 3 3 chr21 38110617 38110903 -6796667 + AluSx SINE Alu 1 286 -26 228 35 0 0 chr21 38110903 38110932 -6796638 + (GA)n Simple_repeat Simple_repeat 2 30 0 480 262 66 66 chr21 38110932 38110998 -6796572 - L1ME1 LINE L1 -115 6051 5979 1392 192 31 78 chr21 38111954 38112313 -6795257 - MLT1B LTR MaLR -43 347 6 1289 111 6 0 chr21 38112539 38112719 -6794851 + AluSq SINE Alu 115 295 -18 180 97 0 0 chr21 38113440 38113471 -6794099 + (T)n Simple_repeat Simple_repeat 1 31 0 2466 65 0 0 chr21 38115510 38115817 -6791753 - AluY SINE Alu -4 307 1 983 163 4 107 chr21 38116378 38116460 -6791110 - MER96B DNA MER1_type? -194 223 134 1973 104 7 42 chr21 38116460 38116768 -6790802 - AluSq SINE Alu -14 299 3 983 163 4 107 chr21 38116768 38116918 -6790652 - MER96B DNA MER1_type? -283 134 15 2969 178 38 50 chr21 38117583 38118546 -6789024 - LTR13 LTR ERVK 0 1007 4 1995 79 29 0 chr21 38118670 38118947 -6788623 - L1MA1 LINE L1 0 6302 6018 1366 114 0 15 chr21 38118947 38119148 -6788422 + L1MA1 LINE L1 5803 6000 -302 996 165 0 7 chr21 38121088 38121357 -6786213 + (TCCA)n Simple_repeat Simple_repeat 1 443 0 574 254 42 57 chr21 38121620 38121813 -6785757 + MIR SINE MIR 8 197 -65 440 259 49 66 chr21 38123069 38123209 -6784361 + MIR3 SINE MIR 11 147 -61 2292 77 7 0 chr21 38123209 38123506 -6784064 + AluSg SINE Alu 1 299 -11 440 259 49 66 chr21 38123506 38123544 -6784026 + MIR3 SINE MIR 147 184 -24 2257 101 0 0 chr21 38123866 38124172 -6783398 + AluY SINE Alu 1 306 -5 542 195 0 34 chr21 38126133 38126145 -6781425 - Charlie1b DNA MER1_type -2240 521 510 2238 89 0 0 chr21 38126145 38126436 -6781134 - AluSq SINE Alu -22 291 1 542 195 0 34 chr21 38126436 38126528 -6781042 - Charlie1b DNA MER1_type -2251 510 421 2495 163 54 27 chr21 38126528 38126975 -6780595 - LTR32 LTR ERVL 0 471 13 1507 178 26 117 chr21 38126980 38127440 -6780130 - Charlie1b DNA MER1_type -105 418 1 2574 42 0 0 chr21 38129688 38129998 -6777572 + AluY SINE Alu 1 310 -1 2245 70 0 7 chr21 38131868 38132155 -6775415 + AluY SINE Alu 1 285 -26 408 181 0 26 chr21 38132635 38132751 -6774819 + CT-rich Low_complexity Low_complexity 3 115 0 1930 101 0 4 chr21 38133643 38133910 -6773660 + AluSx SINE Alu 29 294 -18 2092 74 0 0 chr21 38135888 38136159 -6771411 - AluSp SINE Alu -4 309 39 1533 153 19 0 chr21 38138811 38139073 -6768497 - AluJo SINE Alu -11 301 35 2065 89 46 23 chr21 38140400 38140703 -6766867 + AluSx SINE Alu 1 310 -2 1103 278 100 38 chr21 38141555 38142027 -6765543 - MLT1J LTR MaLR -10 501 1 314 146 0 0 chr21 38142568 38142616 -6764954 - L1P LINE L1 -3843 2303 2256 4278 87 61 2 chr21 38142626 38143213 -6764357 + L1PA11 LINE L1 5553 6174 0 2074 168 21 18 chr21 38143862 38144250 -6763320 + MLT1B LTR MaLR 2 390 0 648 101 49 27 chr21 38145735 38146535 -6761035 + (TG)n Simple_repeat Simple_repeat 1 817 0 214 73 49 0 chr21 38146559 38146600 -6760970 + (TG)n Simple_repeat Simple_repeat 2 44 0 483 191 45 55 chr21 38147662 38147772 -6759798 + MLT1B LTR MaLR 1 109 -281 907 168 14 1 chr21 38147803 38147967 -6759603 + MLT1B LTR MaLR 194 389 -1 903 119 0 0 chr21 38148135 38148253 -6759317 - FLAM_C SINE Alu -15 118 1 708 269 154 22 chr21 38149275 38149667 -6757903 - MER57A LTR ERV1 -2 401 3 299 266 22 11 chr21 38150408 38150501 -6757069 - MIR SINE MIR -61 147 53 1269 150 70 57 chr21 38150636 38150936 -6756634 - AluJo SINE Alu -8 304 1 369 301 55 33 chr21 38151511 38151694 -6755876 - L2 LINE L2 -7 3306 3120 992 67 22 28 chr21 38153315 38153494 -6754076 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 843 103 0 0 chr21 38154147 38154263 -6753307 - L1PB1 LINE L1 -1 6150 6035 273 122 0 0 chr21 38154265 38154306 -6753264 + 5S rRNA rRNA 2 42 -79 214 333 94 42 chr21 38158027 38158219 -6749351 + MIR SINE MIR 61 262 0 263 309 65 23 chr21 38158853 38159152 -6748418 - L1 LINE L1 -1677 4469 4157 1713 192 25 25 chr21 38159542 38159738 -6747832 - MLT1A2 LTR MaLR -15 359 161 2114 112 0 3 chr21 38159738 38160041 -6747529 - AluSx SINE Alu -10 302 1 1713 192 25 25 chr21 38160041 38160203 -6747367 - MLT1A2 LTR MaLR -212 162 1 275 259 23 2 chr21 38161668 38161762 -6745808 - MLT1J1 LTR MaLR -5 441 352 476 268 65 6 chr21 38161813 38161981 -6745589 - MLT1J1 LTR MaLR -268 178 1 1452 156 0 0 chr21 38162633 38162858 -6744712 - AluSq SINE Alu -88 225 1 984 118 0 0 chr21 38162858 38162993 -6744577 - AluSq/x SINE Alu -177 135 1 205 296 151 26 chr21 38163054 38163206 -6744364 + MIR SINE MIR 42 212 -50 * 518 294 104 32 chr21 38163184 38163405 -6744165 - MIR SINE MIR -6 256 20 1906 184 119 14 chr21 38163581 38164010 -6743560 + MLT1D LTR MaLR 5 478 -27 271 330 70 17 chr21 38164977 38165092 -6742478 - MIR3 SINE MIR -3 205 85 992 306 44 3 chr21 38165843 38166183 -6741387 + LTR16C LTR ERVL 138 491 0 189 274 178 20 chr21 38166425 38166571 -6740999 - L2 LINE L2 -29 3284 3116 464 253 39 19 chr21 38168268 38168422 -6739148 - MLT1J2 LTR MaLR -15 435 279 1796 189 52 58 chr21 38168480 38168945 -6738625 - MLT1C LTR MaLR 0 467 6 424 250 73 18 chr21 38168962 38169126 -6738444 - MLT1J1 LTR MaLR -272 174 2 477 308 48 13 chr21 38169130 38169357 -6738213 - MIR SINE MIR -8 254 20 298 214 0 62 chr21 38170167 38170279 -6737291 + GA-rich Low_complexity Low_complexity 1 105 0 578 263 24 42 chr21 38170997 38171210 -6736360 + MLT1J2 LTR MaLR 1 209 -241 1791 199 31 17 chr21 38171310 38171662 -6735908 + MLT1A1 LTR MaLR 9 365 0 374 339 33 22 chr21 38171662 38171842 -6735728 + MLT1J2 LTR MaLR 267 448 -2 231 263 40 40 chr21 38172532 38172631 -6734939 - MIR SINE MIR -34 228 130 618 267 104 30 chr21 38173334 38173604 -6733966 - HAL1 LINE L1 -36 2471 2182 912 263 131 46 chr21 38173609 38174153 -6733417 - HAL1 LINE L1 -352 2155 1566 2531 224 67 11 chr21 38174180 38174823 -6732747 - L1ME1 LINE L1 -5 6161 5483 1234 267 62 34 chr21 38174817 38175498 -6732072 - HAL1 LINE L1 -936 1571 872 * 762 184 24 65 chr21 38175500 38175668 -6731902 + MER20 DNA MER1_type 2 162 -57 2259 166 36 31 chr21 38175668 38176216 -6731354 + MLT2A2 LTR ERVL 1 554 0 298 224 0 0 chr21 38176221 38176279 -6731291 + MER20 DNA MER1_type 162 219 0 343 188 289 0 chr21 38176580 38176708 -6730862 - HAL1 LINE L1 -2030 477 313 204 348 107 22 chr21 38176855 38177079 -6730491 + L2 LINE L2 1372 1614 -1700 1688 226 97 25 chr21 38177626 38178068 -6729502 + MER74B LTR ERVL 56 529 -93 180 0 0 0 chr21 38178302 38178322 -6729248 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 389 299 123 13 chr21 38178553 38178707 -6728863 + MER5B DNA MER1_type 5 175 -3 1044 159 28 11 chr21 38178776 38178958 -6728612 - MER5A DNA MER1_type -4 185 1 378 240 0 0 chr21 38179023 38179098 -6728472 - MER81 DNA DNA -36 78 4 * 1367 206 120 77 chr21 38179098 38179365 -6728205 + MLT1D LTR MaLR 25 322 -183 4915 78 19 18 chr21 38179365 38179930 -6727640 - PABL_B LTR ERV1 0 667 99 2327 117 0 0 chr21 38179930 38180237 -6727333 - AluSg SINE Alu -3 307 1 4915 78 19 18 chr21 38180237 38180337 -6727233 - PABL_B LTR ERV1 -568 99 1 1367 206 120 77 chr21 38180337 38180529 -6727041 + MLT1D LTR MaLR 322 504 -1 1325 194 7 41 chr21 38181454 38181798 -6725772 - AluJo SINE Alu 0 334 1 1373 232 83 11 chr21 38181799 38182174 -6725396 - MER95 LTR ERV -29 402 1 1225 237 98 35 chr21 38182179 38182609 -6724961 - L1MA8 LINE L1 -25 6266 5810 203 192 39 19 chr21 38182883 38182935 -6724635 + L2 LINE L2 3217 3269 -3 2252 92 0 0 chr21 38184618 38184890 -6722680 - AluSp SINE Alu -19 294 23 2098 134 3 0 chr21 38185759 38186058 -6721512 - AluSx SINE Alu -12 300 1 612 248 71 59 chr21 38186408 38186912 -6720658 - L1MEd LINE L1 -4908 1297 821 1904 249 40 22 chr21 38187207 38187762 -6719808 - MLT1F1 LTR MaLR 0 567 3 2147 141 0 10 chr21 38188430 38188777 -6718793 - AluJb SINE Alu 0 344 1 859 229 48 19 chr21 38189491 38189701 -6717869 + MER20 DNA MER1_type 1 216 -3 193 292 0 0 chr21 38189752 38189800 -6717770 + L2 LINE L2 3223 3270 -2 265 256 134 0 chr21 38190597 38190679 -6716891 - MARNA DNA Mariner -180 406 314 258 116 0 0 chr21 38191656 38191699 -6715871 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 0 0 0 chr21 38191806 38191833 -6715737 + AT_rich Low_complexity Low_complexity 1 27 0 2464 108 8 30 chr21 38192268 38192640 -6714930 - THE1B LTR MaLR 0 364 1 318 128 0 0 chr21 38193269 38193316 -6714254 - MLT2C2 LTR ERVL -2 518 472 1929 186 31 45 chr21 38193389 38193809 -6713761 - MLT2C2 LTR ERVL -50 414 1 1853 151 57 26 chr21 38194503 38194853 -6712717 - MLT1A1 LTR MaLR 0 365 5 195 62 31 0 chr21 38195390 38195422 -6712148 + L2 LINE L2 3281 3313 0 1665 151 199 8 chr21 38196172 38196524 -6711046 + LOR1a LTR ERV1 79 497 0 283 227 6 147 chr21 38197000 38197163 -6710407 - MIR SINE MIR -5 257 118 1909 169 0 7 chr21 38197341 38197649 -6709921 + AluJo SINE Alu 1 306 -6 213 301 43 0 chr21 38197892 38197985 -6709585 + MIR SINE MIR 97 193 -69 405 0 0 0 chr21 38199898 38199943 -6707627 + (TG)n Simple_repeat Simple_repeat 1 45 0 722 277 73 11 chr21 38200272 38200532 -6707038 - MLT1C LTR MaLR -1 466 191 572 232 98 12 chr21 38201485 38201649 -6705921 - MLT1C LTR MaLR -308 197 20 462 231 19 44 chr21 38202587 38202747 -6704823 + L2 LINE L2 3158 3313 0 1726 154 8 0 chr21 38202847 38203113 -6704457 - AluJb SINE Alu -3 309 42 2559 179 55 2 chr21 38203118 38203610 -6703960 - LTR53 LTR ERVL -1 518 1 293 302 101 8 chr21 38203658 38203787 -6703783 + MIR SINE MIR 72 212 -50 1986 121 43 0 chr21 38203792 38204072 -6703498 + AluSc SINE Alu 1 292 -17 244 235 0 0 chr21 38204197 38204248 -6703322 + MIR SINE MIR 102 152 -110 200 291 142 28 chr21 38206129 38206270 -6701300 + MIR SINE MIR 86 242 -20 199 234 188 0 chr21 38208471 38208535 -6699035 + L2 LINE L2 3231 3306 -7 531 239 52 70 chr21 38209666 38210005 -6697565 + LTR35 LTR ERV1 350 618 0 333 100 0 0 chr21 38210129 38210179 -6697391 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 291 114 0 0 chr21 38210220 38210264 -6697306 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 189 393 50 0 chr21 38210864 38211004 -6696566 + L2 LINE L2 2170 2316 -998 248 91 23 0 chr21 38211100 38211144 -6696426 + (TG)n Simple_repeat Simple_repeat 1 45 0 293 348 77 11 chr21 38211281 38211462 -6696108 - MIR SINE MIR -20 242 50 442 119 25 17 chr21 38211869 38211987 -6695583 + (CA)n Simple_repeat Simple_repeat 1 119 0 329 138 41 28 chr21 38212012 38212157 -6695413 + (CA)n Simple_repeat Simple_repeat 1 147 0 237 127 55 27 chr21 38212168 38212278 -6695292 + (CA)n Simple_repeat Simple_repeat 1 113 0 306 153 59 12 chr21 38212304 38212474 -6695096 + (CA)n Simple_repeat Simple_repeat 1 178 0 333 0 0 0 chr21 38212595 38212632 -6694938 + (CA)n Simple_repeat Simple_repeat 1 37 0 759 250 31 10 chr21 38212684 38212876 -6694694 + MLT1A1 LTR MaLR 170 365 0 894 227 0 37 chr21 38212876 38213092 -6694478 - MLT1B LTR MaLR -182 208 1 2169 100 0 0 chr21 38213255 38213534 -6694036 + AluSc SINE Alu 1 279 -30 21 0 0 0 chr21 38213641 38213662 -6693908 + AT_rich Low_complexity Low_complexity 1 21 0 415 217 0 12 chr21 38214670 38214753 -6692817 - MLT1C LTR MaLR -32 435 354 1406 232 31 14 chr21 38215154 38215512 -6692058 - MLT1C LTR MaLR -98 369 6 315 130 0 0 chr21 38217325 38217379 -6690191 + (TCC)n Simple_repeat Simple_repeat 1 54 0 278 287 87 43 chr21 38219358 38219473 -6688097 + MIR3 SINE MIR 14 133 -75 500 261 92 51 chr21 38220900 38221095 -6686475 + MIR SINE MIR 60 262 0 373 326 126 36 chr21 38221106 38221440 -6686130 - L2 LINE L2 -5 3267 2904 357 302 83 24 chr21 38221891 38222060 -6685510 + MIR SINE MIR 48 226 -36 200 329 86 26 chr21 38222373 38222525 -6685045 + MIR SINE MIR 40 200 -62 574 256 97 89 chr21 38222721 38223112 -6684458 + MLT2F LTR ERVL 1 394 -269 1573 221 172 5 chr21 38223114 38223544 -6684026 + LTR53 LTR ERVL 4 505 -14 889 220 70 0 chr21 38223574 38223760 -6683810 + MLT2F LTR ERVL 401 599 -64 328 197 0 30 chr21 38223784 38223850 -6683720 - MLT2F LTR ERVL -47 616 553 253 262 36 24 chr21 38225309 38225393 -6682177 + MIR SINE MIR 56 140 -122 605 197 89 120 chr21 38225498 38225757 -6681813 - MIR SINE MIR -11 251 1 369 285 35 49 chr21 38225961 38226105 -6681465 + MLT1K LTR MaLR 445 586 -2 932 238 45 20 chr21 38226192 38226600 -6680970 - MLT1C LTR MaLR 0 467 21 2357 131 28 17 chr21 38226958 38227318 -6680252 + THE1B LTR MaLR 1 364 0 1895 134 3 0 chr21 38228063 38228347 -6679223 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr21 38228347 38228368 -6679202 + AT_rich Low_complexity Low_complexity 1 21 0 786 253 45 29 chr21 38228996 38229241 -6678329 - MIR SINE MIR -1 261 13 2199 116 0 0 chr21 38230285 38230588 -6676982 - AluSq SINE Alu -10 303 1 219 272 136 0 chr21 38230670 38230751 -6676819 - L2 LINE L2 0 3313 3222 256 283 40 28 chr21 38230760 38230940 -6676630 - LTR16A1 LTR ERVL -4 453 187 429 303 55 42 chr21 38230948 38231186 -6676384 - L2 LINE L2 -889 2425 2185 2382 65 7 7 chr21 38231284 38231593 -6675977 + AluY SINE Alu 2 310 -1 2009 116 0 20 chr21 38231618 38231921 -6675649 + AluSc SINE Alu 13 309 0 1069 184 22 0 chr21 38231937 38232116 -6675454 + MSTC LTR MaLR 245 427 -1 897 308 48 4 chr21 38234929 38235202 -6672368 - LTR40a LTR ERVL 0 519 235 701 277 70 59 chr21 38235203 38235560 -6672010 - L2 LINE L2 -1 3312 2952 991 225 14 22 chr21 38235617 38235839 -6671731 - LTR40a LTR ERVL -299 220 1 227 149 0 21 chr21 38237692 38237739 -6669831 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 1103 213 18 5 chr21 38238267 38238488 -6669082 - MER58A DNA MER1_type 0 224 1 22 0 0 0 chr21 38239265 38239287 -6668283 + AT_rich Low_complexity Low_complexity 1 22 0 1837 116 4 7 chr21 38240464 38240741 -6666829 + AluSx SINE Alu 1 276 -36 325 54 36 0 chr21 38240741 38240797 -6666773 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 1037 301 30 0 chr21 38240834 38241173 -6666397 + LTR16B LTR ERVL 116 464 0 462 317 165 45 chr21 38241197 38241775 -6665795 + L2 LINE L2 1890 2550 -764 1563 175 0 52 chr21 38241775 38242084 -6665486 - AluJo SINE Alu -9 303 11 462 317 165 45 chr21 38242084 38242130 -6665440 + L2 LINE L2 2550 2589 -725 294 340 51 43 chr21 38242438 38242829 -6664741 - L2 LINE L2 -632 2682 2289 1570 138 52 8 chr21 38243210 38243478 -6664092 + AluSp SINE Alu 21 300 -13 2110 87 35 0 chr21 38243922 38244209 -6663361 - AluSp SINE Alu -16 297 1 203 183 49 24 chr21 38244679 38244761 -6662809 + T-rich Low_complexity Low_complexity 2 85 0 415 242 20 0 chr21 38245753 38245852 -6661718 + MIR SINE MIR 112 212 -50 318 308 10 19 chr21 38246248 38246352 -6661218 + CT-rich Low_complexity Low_complexity 4 106 0 1983 123 49 37 chr21 38246364 38246689 -6660881 + THE1B LTR MaLR 1 329 -35 186 43 0 0 chr21 38246702 38246725 -6660845 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 185 0 40 0 chr21 38246888 38246913 -6660657 + (GA)n Simple_repeat Simple_repeat 1 26 0 287 279 0 7 chr21 38247415 38247522 -6660048 + GA-rich Low_complexity Low_complexity 1 106 0 455 75 0 0 chr21 38247526 38247593 -6659977 + Alu SINE Alu 244 310 0 958 240 14 5 chr21 38248534 38248751 -6658819 + MER20 DNA MER1_type 1 219 0 42658 36 29 2 chr21 38249232 38255200 -6652370 - L1PA2 LINE L1 -1 6154 21 405 361 0 0 chr21 38256339 38256497 -6651073 + (CATA)n Simple_repeat Simple_repeat 2 159 0 368 318 222 12 chr21 38256592 38256925 -6650645 - L2 LINE L2 -22 3291 2889 186 103 0 0 chr21 38257987 38258016 -6649554 + (CA)n Simple_repeat Simple_repeat 2 30 0 43194 36 24 2 chr21 38259519 38265538 -6642032 + L1PA2 LINE L1 1 6155 0 239 208 19 19 chr21 38265824 38265877 -6641693 - L2 LINE L2 0 3313 3261 210 312 32 48 chr21 38265975 38266100 -6641470 - L2 LINE L2 0 3313 3191 236 268 0 0 chr21 38267112 38267168 -6640402 - MIR SINE MIR -115 147 92 426 292 101 10 chr21 38267702 38267911 -6639659 + Charlie8 DNA MER1_type 15 242 -2175 779 245 51 40 chr21 38268172 38268624 -6638946 + MLT1G1 LTR MaLR 1 595 0 1191 192 52 8 chr21 38271230 38271480 -6636090 + MLT1C LTR MaLR 1 261 -206 353 207 12 24 chr21 38271467 38271549 -6636021 + MLT1C LTR MaLR 387 467 0 * 260 378 27 21 chr21 38274364 38274552 -6633018 + MIR SINE MIR 9 197 -65 372 237 186 6 chr21 38276439 38276595 -6630975 + MER5A DNA MER1_type 1 184 -5 2271 74 32 0 chr21 38276845 38277130 -6630440 - AluY SINE Alu -17 294 1 309 330 17 80 chr21 38277789 38277965 -6629605 + MIR SINE MIR 20 184 -78 188 262 234 0 chr21 38280300 38280407 -6627163 + MIR SINE MIR 85 216 -46 268 340 134 10 chr21 38281150 38281344 -6626226 + MIR SINE MIR 45 262 0 25 0 0 0 chr21 38282363 38282388 -6625182 + AT_rich Low_complexity Low_complexity 1 25 0 537 122 0 0 chr21 38284157 38284231 -6623339 - AluJ/FRAM SINE Alu -21 291 218 2411 77 10 0 chr21 38284231 38284529 -6623041 - AluY SINE Alu -10 301 1 583 297 80 50 chr21 38284550 38284914 -6622656 + L2 LINE L2 2935 3309 -4 23 54 0 0 chr21 38285704 38285741 -6621829 + AT_rich Low_complexity Low_complexity 1 37 0 232 363 140 0 chr21 38286006 38286185 -6621385 - MIR3 SINE MIR -4 204 1 495 208 142 33 chr21 38286938 38287121 -6620449 - Charlie8 DNA MER1_type -2152 265 63 271 295 54 16 chr21 38287406 38287535 -6620035 + L2 LINE L2 2258 2391 -923 2311 109 0 0 chr21 38287651 38287955 -6619615 + AluSq SINE Alu 8 311 -2 255 119 0 0 chr21 38290508 38290550 -6617020 - L1MC4 LINE L1 -1343 6699 6658 186 396 86 0 chr21 38291818 38291957 -6615613 - L3 LINE CR1 -4 1573 1423 276 328 27 48 chr21 38292695 38292881 -6614689 - L3 LINE CR1 -304 1273 1092 317 276 85 40 chr21 38292941 38293140 -6614430 - L3 LINE CR1 -713 864 657 1801 164 54 23 chr21 38293318 38293672 -6613898 - MER47A DNA MER2_type -1 365 1 433 141 0 22 chr21 38294053 38294145 -6613425 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 25 31 0 0 chr21 38294795 38294827 -6612743 + AT_rich Low_complexity Low_complexity 1 32 0 2402 106 3 0 chr21 38295161 38295473 -6612097 + AluSp SINE Alu 1 313 0 744 175 0 27 chr21 38296549 38296732 -6610838 + GA-rich Low_complexity Low_complexity 3 180 0 360 156 33 11 chr21 38296727 38296817 -6610753 + A-rich Low_complexity Low_complexity 4 95 0 * 2559 53 0 7 chr21 38298705 38299005 -6608565 - AluY SINE Alu -13 298 1 192 311 189 0 chr21 38307323 38307519 -6600051 - MIR SINE MIR -20 242 10 2197 112 0 7 chr21 38308536 38308840 -6598730 + AluSc SINE Alu 1 302 -7 624 222 127 16 chr21 38309088 38309277 -6598293 + MER63A DNA MER1_type 1 210 0 2230 125 0 0 chr21 38309504 38309808 -6597762 + AluSx SINE Alu 1 304 -8 495 0 0 0 chr21 38310859 38310914 -6596656 + (CA)n Simple_repeat Simple_repeat 2 56 0 232 151 47 81 chr21 38314196 38314282 -6593288 + L1P3 LINE L1 987 1069 -4806 302 258 49 61 chr21 38315171 38315334 -6592236 + MER112 DNA MER1_type 2 162 -98 299 239 112 45 chr21 38315607 38315741 -6591829 + MER5A DNA MER1_type 23 165 -24 208 371 44 44 chr21 38316216 38316421 -6591149 + L2 LINE L2 1166 1370 -1944 699 149 37 0 chr21 38317425 38317559 -6590011 + L1MC3 LINE L1 7638 7776 -9 260 333 28 21 chr21 38317592 38317736 -6589834 + L2 LINE L2 2714 2858 -456 213 198 27 117 chr21 38317906 38317972 -6589598 + L2 LINE L2 3119 3173 -140 2792 93 0 3 chr21 38317972 38318337 -6589233 - THE1B LTR MaLR 0 364 1 213 198 27 117 chr21 38318337 38318381 -6589189 + L2 LINE L2 3173 3219 -94 856 272 154 26 chr21 38318449 38318761 -6588809 + MLT1J2 LTR MaLR 95 446 -4 214 246 29 43 chr21 38318761 38318830 -6588740 + L2 LINE L2 3204 3271 -1 2391 254 46 51 chr21 38320481 38321269 -6586301 + L1MEc LINE L1 37 820 -5576 2106 180 62 23 chr21 38321274 38321342 -6586228 + L1MB7 LINE L1 5734 5798 -386 2291 129 36 38 chr21 38321342 38321707 -6585863 - THE1B LTR MaLR 0 364 1 2106 180 62 23 chr21 38321707 38322072 -6585498 + L1MB7 LINE L1 5798 6184 0 525 256 99 22 chr21 38322076 38322349 -6585221 + L1MEc LINE L1 835 1128 -5268 689 101 0 10 chr21 38322350 38322449 -6585121 + MER4A LTR ERV1 1 98 -566 1616 116 179 113 chr21 38322449 38322828 -6584742 + MER4A LTR ERV1 261 664 0 3067 251 49 41 chr21 38322840 38324017 -6583553 + L1MEc LINE L1 1151 2313 -3902 2266 92 0 0 chr21 38324017 38324375 -6583195 + AluY SINE Alu 1 358 0 3067 251 49 41 chr21 38324375 38324598 -6582972 + L1MEc LINE L1 2313 2533 -3682 393 322 37 7 chr21 38324722 38324893 -6582677 - MIR3 SINE MIR -65 143 6 21 0 0 0 chr21 38326993 38327014 -6580556 + AT_rich Low_complexity Low_complexity 1 21 0 900 137 0 86 chr21 38327764 38327939 -6579631 - MER1B DNA MER1_type 0 339 180 21 71 0 0 chr21 38329827 38329869 -6577701 + AT_rich Low_complexity Low_complexity 1 42 0 214 211 0 18 chr21 38330039 38330096 -6577474 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr21 38330125 38330147 -6577423 + AT_rich Low_complexity Low_complexity 1 22 0 213 174 12 23 chr21 38330151 38330237 -6577333 + (TA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr21 38330266 38330288 -6577282 + AT_rich Low_complexity Low_complexity 1 22 0 2354 122 61 0 chr21 38330869 38331229 -6576341 + L1MC1 LINE L1 5942 6323 -10 2711 101 8 3 chr21 38331682 38332048 -6575522 + THE1C LTR MaLR 1 368 -7 8744 169 6 41 chr21 38332199 38332333 -6575237 - L1P LINE L1 -2231 3915 3778 2607 129 6 3 chr21 38332333 38332696 -6574874 - THE1B LTR MaLR 0 364 1 8744 169 6 41 chr21 38332696 38334282 -6573288 - L1P LINE L1 -2368 3778 2255 * 8766 147 16 2 chr21 38334272 38335789 -6571781 + L1PA13 LINE L1 3893 5428 -733 44801 43 1 0 chr21 38335796 38341935 -6565635 + L1PA4 LINE L1 7 6154 -1 5280 111 11 16 chr21 38341935 38342682 -6564888 + L1PA13 LINE L1 5413 6158 -5 285 333 25 8 chr21 38342707 38342827 -6564743 + L3b LINE CR1 1394 1515 -68 2637 62 0 0 chr21 38343079 38343387 -6564183 + AluY SINE Alu 1 308 -3 244 282 94 47 chr21 38343778 38343927 -6563643 + MIR SINE MIR 36 191 -71 338 205 16 126 chr21 38343950 38344077 -6563493 - MER112 DNA MER1_type -40 220 108 267 31 0 0 chr21 38344307 38344339 -6563231 + (CA)n Simple_repeat Simple_repeat 2 33 0 208 385 90 25 chr21 38344402 38344680 -6562890 - L2 LINE L2 -466 2848 2553 1875 109 4 4 chr21 38344700 38344966 -6562604 + AluSx SINE Alu 39 304 -8 351 260 18 101 chr21 38345393 38345562 -6562008 + MLT1I LTR MaLR 252 406 -3 234 152 43 0 chr21 38346528 38346574 -6560996 - L2 LINE L2 -4 3309 3262 2156 118 3 7 chr21 38348040 38348344 -6559226 - AluSx SINE Alu -4 308 6 2054 172 33 0 chr21 38349305 38349672 -6557898 + L1MB3 LINE L1 5796 6174 -9 359 261 11 11 chr21 38349694 38349782 -6557788 - L2 LINE L2 -4 3268 3181 436 138 11 21 chr21 38350095 38350189 -6557381 + GA-rich Low_complexity Low_complexity 3 95 0 1939 130 42 88 chr21 38350800 38351208 -6556362 + MLT1B LTR MaLR 2 390 0 714 173 6 28 chr21 38352557 38352736 -6554834 + GA-rich Low_complexity Low_complexity 3 177 0 499 329 52 16 chr21 38353317 38353569 -6554001 + MIR SINE MIR 1 261 -1 314 328 90 30 chr21 38353925 38354126 -6553444 + L2 LINE L2 2252 2464 -850 538 261 73 109 chr21 38354187 38354609 -6552961 + L2 LINE L2 2851 3257 -15 2407 232 45 32 chr21 38354643 38355289 -6552281 + MLT1E1 LTR MaLR 1 654 0 1792 105 4 0 chr21 38357790 38358029 -6549541 - AluSx SINE Alu -18 294 55 231 312 32 11 chr21 38358640 38358733 -6548837 - MIR SINE MIR -131 131 37 21 0 0 0 chr21 38358738 38358759 -6548811 + AT_rich Low_complexity Low_complexity 1 21 0 213 159 0 0 chr21 38359960 38360004 -6547566 + A-rich Low_complexity Low_complexity 1 44 0 799 116 0 8 chr21 38360880 38361001 -6546569 - L1MA9 LINE L1 -175 6137 6018 831 164 20 20 chr21 38361011 38361163 -6546407 + L1MA9 LINE L1 6159 6310 -2 251 206 249 29 chr21 38361701 38361889 -6545681 - MIR SINE MIR -29 233 5 839 222 0 12 chr21 38362685 38362847 -6544723 + FRAM SINE Alu 1 154 -22 2460 75 0 3 chr21 38363251 38363557 -6544013 + AluY SINE Alu 1 305 -6 459 0 0 0 chr21 38363953 38364004 -6543566 + (CA)n Simple_repeat Simple_repeat 2 52 0 36 70 0 0 chr21 38364041 38364112 -6543458 + AT_rich Low_complexity Low_complexity 1 71 0 274 143 54 18 chr21 38364587 38364699 -6542871 + (TG)n Simple_repeat Simple_repeat 1 116 0 369 119 77 7 chr21 38364777 38364920 -6542650 + (TG)n Simple_repeat Simple_repeat 1 153 0 379 98 98 6 chr21 38364931 38365095 -6542475 + (TG)n Simple_repeat Simple_repeat 1 179 0 453 110 83 0 chr21 38365142 38365287 -6542283 + (TG)n Simple_repeat Simple_repeat 1 157 0 537 87 60 20 chr21 38365354 38365503 -6542067 + (TG)n Simple_repeat Simple_repeat 1 155 0 1733 138 5 72 chr21 38365538 38365908 -6541662 - MER4A LTR ERV1 0 664 261 534 109 76 11 chr21 38365908 38366000 -6541570 - MER4A LTR ERV1 -566 98 1 283 171 65 32 chr21 38366001 38366124 -6541446 + (TG)n Simple_repeat Simple_repeat 1 127 0 428 96 84 12 chr21 38366136 38366302 -6541268 + (TG)n Simple_repeat Simple_repeat 1 178 0 223 149 68 0 chr21 38366320 38366394 -6541176 + (TG)n Simple_repeat Simple_repeat 1 79 0 2135 110 0 10 chr21 38367691 38367992 -6539578 + AluSx SINE Alu 1 298 -14 216 0 0 0 chr21 38368334 38368358 -6539212 + (CA)n Simple_repeat Simple_repeat 2 25 0 213 175 0 0 chr21 38368375 38368415 -6539155 + GA-rich Low_complexity Low_complexity 3 42 0 2429 48 0 0 chr21 38369868 38370158 -6537412 + AluY SINE Alu 1 290 -21 24 0 0 0 chr21 38370459 38370483 -6537087 + AT_rich Low_complexity Low_complexity 1 24 0 184 254 70 42 chr21 38371339 38371410 -6536160 - MIR SINE MIR -171 91 19 320 204 35 133 chr21 38371556 38371669 -6535901 - L2 LINE L2 -32 3281 3180 2268 112 0 0 chr21 38371921 38372217 -6535353 + AluSx SINE Alu 1 296 -16 226 227 0 0 chr21 38372286 38372330 -6535240 + L1MC4 LINE L1 6660 6703 -1339 * 229 293 73 0 chr21 38372297 38372379 -6535191 - L1MC4 LINE L1 -1340 6702 6615 26 0 0 0 chr21 38373411 38373437 -6534133 + AT_rich Low_complexity Low_complexity 1 26 0 371 281 127 43 chr21 38374074 38374327 -6533243 - L1ME4a LINE L1 -217 5904 5631 716 220 66 0 chr21 38374717 38374899 -6532671 + L1MB7 LINE L1 5991 6184 0 204 200 0 0 chr21 38375067 38375112 -6532458 + (CCA)n Simple_repeat Simple_repeat 1 45 0 282 286 0 0 chr21 38375140 38375217 -6532353 + (CCA)n Simple_repeat Simple_repeat 1 77 0 346 157 43 70 chr21 38375391 38375718 -6531852 + (CACCAT)n Simple_repeat Simple_repeat 1 318 0 463 273 35 0 chr21 38375736 38375908 -6531662 + (CCA)n Simple_repeat Simple_repeat 3 180 0 343 119 35 77 chr21 38375921 38376064 -6531506 + (CACCAT)n Simple_repeat Simple_repeat 3 139 0 462 265 20 20 chr21 38376128 38376393 -6531177 + (CCA)n Simple_repeat Simple_repeat 1 265 0 645 227 17 23 chr21 38379977 38380153 -6527417 + MER5A DNA MER1_type 15 189 0 493 88 10 39 chr21 38380503 38380605 -6526965 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 1711 175 16 13 chr21 38380605 38380913 -6526657 - AluJb SINE Alu -3 309 1 44 0 0 0 chr21 38382412 38382456 -6525114 + AT_rich Low_complexity Low_complexity 1 44 0 486 33 0 0 chr21 38382642 38382702 -6524868 + (GA)n Simple_repeat Simple_repeat 2 61 0 2108 144 3 0 chr21 38382914 38383253 -6524317 + MST-int LTR MaLR 17 356 -1295 254 91 0 68 chr21 38383254 38383298 -6524272 + THE1-int LTR MaLR 1423 1463 -117 1171 245 39 33 chr21 38383347 38383682 -6523888 + MER58B DNA MER1_type 2 338 -3 1821 185 10 0 chr21 38384044 38384352 -6523218 - AluJb SINE Alu -1 311 1 1799 166 3 31 chr21 38384461 38384781 -6522789 + AluJb SINE Alu 1 311 -1 25 0 0 0 chr21 38385929 38385954 -6521616 + AT_rich Low_complexity Low_complexity 1 25 0 1815 171 3 3 chr21 38385954 38386241 -6521329 - AluSx SINE Alu -25 287 1 186 311 49 0 chr21 38387875 38387936 -6519634 - L2 LINE L2 -60 3212 3149 254 282 190 12 chr21 38388513 38388676 -6518894 + MIR SINE MIR 36 227 -35 345 82 0 0 chr21 38389429 38389478 -6518092 + (CA)n Simple_repeat Simple_repeat 2 50 0 2079 116 0 14 chr21 38390875 38391192 -6516378 + AluSx SINE Alu 2 314 0 228 35 0 0 chr21 38392522 38392551 -6515019 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2214 94 16 10 chr21 38394143 38394451 -6513119 + AluY SINE Alu 1 310 -1 384 329 38 13 chr21 38395180 38395338 -6512232 + MIR SINE MIR 44 205 -57 2197 127 0 0 chr21 38397437 38397736 -6509834 - AluSx SINE Alu -13 299 1 30 0 0 0 chr21 38398090 38398120 -6509450 + AT_rich Low_complexity Low_complexity 1 30 0 1734 147 12 0 chr21 38398376 38398635 -6508935 + AluSx SINE Alu 29 290 -22 182 209 15 75 chr21 38399105 38399172 -6508398 - L2 LINE L2 -30 3283 3221 447 294 116 67 chr21 38399385 38399790 -6507780 - L2 LINE L2 -4 3309 2885 290 260 113 1 chr21 38400819 38400980 -6506590 - MER58 DNA MER1_type 0 2420 2 407 287 187 48 chr21 38400992 38401222 -6506348 - Charlie8 DNA MER1_type -2263 154 4 1487 196 37 71 chr21 38401395 38401461 -6506109 - MLT1A1 LTR MaLR 0 365 298 2226 116 0 13 chr21 38401461 38401772 -6505798 - AluSx SINE Alu -5 307 1 1487 196 37 71 chr21 38401772 38402083 -6505487 - MLT1A1 LTR MaLR -67 298 1 528 59 0 0 chr21 38402129 38402197 -6505373 + (CA)n Simple_repeat Simple_repeat 2 69 0 396 323 36 38 chr21 38403826 38404112 -6503458 + L1ME LINE L1 5510 5794 -345 249 139 0 0 chr21 38405543 38405586 -6501984 + (A)n Simple_repeat Simple_repeat 1 43 0 452 313 8 0 chr21 38406395 38406529 -6501041 + L2 LINE L2 3137 3271 -1 346 247 100 53 chr21 38407652 38407802 -6499768 + MER5B DNA MER1_type 3 159 -19 425 298 141 23 chr21 38409819 38410124 -6497446 + L3 LINE CR1 1141 1481 -96 182 294 71 71 chr21 38410265 38410391 -6497179 - L2 LINE L2 -8 3264 3139 289 162 0 88 chr21 38410475 38410543 -6497027 - L2 LINE L2 -212 3060 2999 302 296 64 16 chr21 38411047 38411172 -6496398 - L2 LINE L2 -4 3268 3138 216 143 0 0 chr21 38414449 38414491 -6493079 + (CA)n Simple_repeat Simple_repeat 1 42 0 2308 128 8 35 chr21 38415887 38416261 -6491309 + THE1B LTR MaLR 1 364 0 357 268 81 38 chr21 38416570 38416779 -6490791 + L1MEd LINE L1 3 220 -5899 921 270 172 38 chr21 38416791 38417325 -6490245 + L1MEd LINE L1 317 922 -5197 364 176 0 0 chr21 38417875 38417949 -6489621 - L1MB8 LINE L1 0 6178 6105 1615 205 81 29 chr21 38417960 38418404 -6489166 - MLT1C LTR MaLR 0 467 1 2255 212 27 34 chr21 38418460 38418598 -6488972 - L1MB8 LINE L1 -81 6097 5960 2389 119 24 32 chr21 38418598 38418976 -6488594 + THE1C LTR MaLR 1 375 0 2255 212 27 34 chr21 38418976 38419394 -6488176 - L1MB8 LINE L1 -218 5960 5545 784 229 5 46 chr21 38421098 38421316 -6486254 - MER63A DNA MER1_type 0 210 2 28 0 0 0 chr21 38421436 38421464 -6486106 + AT_rich Low_complexity Low_complexity 1 28 0 208 180 0 20 chr21 38421689 38421739 -6485831 + A-rich Low_complexity Low_complexity 1 49 0 298 284 25 0 chr21 38421921 38422002 -6485568 - MER81 DNA DNA -3 111 29 525 262 48 18 chr21 38422713 38422881 -6484689 + MER5B DNA MER1_type 5 177 -1 419 325 18 12 chr21 38422925 38423091 -6484479 + CT-rich Low_complexity Low_complexity 2 168 0 195 328 15 0 chr21 38423107 38423174 -6484396 - MIR SINE MIR 0 262 195 2541 71 0 0 chr21 38423465 38423776 -6483794 - AluY SINE Alu 0 311 1 219 200 44 0 chr21 38423968 38424013 -6483557 + CT-rich Low_complexity Low_complexity 1 47 0 363 308 2 0 chr21 38424177 38424279 -6483291 - MIR SINE MIR -102 106 19 1433 220 68 9 chr21 38424510 38424847 -6482723 - MER45C DNA AcHobo -3 950 594 1146 276 96 0 chr21 38424941 38425242 -6482328 - MER45C DNA AcHobo -540 413 84 3244 69 14 0 chr21 38425634 38426054 -6481516 - L1PA8 LINE L1 -290 5882 5457 2115 73 8 0 chr21 38426054 38426312 -6481258 + L1PA8 LINE L1 5912 6172 0 277 187 187 0 chr21 38426378 38426453 -6481117 - L1MB4 LINE L1 0 6180 6095 2100 168 45 26 chr21 38426567 38426985 -6480585 - L1MB3 LINE L1 -88 6095 5670 260 183 110 73 chr21 38427083 38427165 -6480405 + MIR SINE MIR 108 192 -70 2067 143 3 0 chr21 38427798 38428098 -6479472 - AluSp SINE Alu -11 302 2 402 212 159 97 chr21 38428347 38428573 -6478997 + MLT1F1 LTR MaLR 147 386 -181 330 250 146 0 chr21 38428858 38428954 -6478616 + MIR SINE MIR 89 198 -64 517 253 89 32 chr21 38429360 38429518 -6478052 - MIR SINE MIR -61 201 35 297 221 0 12 chr21 38429555 38429641 -6477929 - L1ME3A LINE L1 -225 5945 5861 320 141 62 16 chr21 38429714 38429778 -6477792 + MER5A DNA MER1_type 37 103 -86 204 324 132 39 chr21 38429867 38430049 -6477521 + MIR SINE MIR 9 207 -55 24 0 0 0 chr21 38430224 38430248 -6477322 + AT_rich Low_complexity Low_complexity 1 24 0 275 385 0 0 chr21 38430550 38430685 -6476885 + (TG)n Simple_repeat Simple_repeat 2 136 0 2323 113 0 0 chr21 38431679 38431981 -6475589 + AluSx SINE Alu 1 302 -10 335 238 49 67 chr21 38432718 38432882 -6474688 - MER5A DNA MER1_type -28 161 1 1124 207 0 21 chr21 38433061 38433298 -6474272 + AluJo SINE Alu 77 308 -4 575 265 93 52 chr21 38433686 38434010 -6473560 + L1ME LINE L1 5482 5818 -303 1807 205 51 11 chr21 38434048 38434423 -6473147 - MLT1B LTR MaLR 0 390 1 1880 135 0 4 chr21 38434529 38434795 -6472775 + AluSq SINE Alu 1 265 -48 2681 238 55 61 chr21 38436730 38436898 -6470672 - L1MD2 LINE L1 -22 6337 6169 2193 131 0 0 chr21 38436898 38437203 -6470367 - AluSx SINE Alu -7 305 1 2681 238 55 61 chr21 38437203 38437641 -6469929 - L1MD2 LINE L1 -190 6169 5736 186 43 0 0 chr21 38437641 38437664 -6469906 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2681 238 55 61 chr21 38437664 38437952 -6469618 - L1MD2 LINE L1 -623 5736 5448 2059 112 0 36 chr21 38438322 38438626 -6468944 - AluSg SINE Alu -17 293 1 1350 224 79 48 chr21 38439043 38439484 -6468086 + MLT1C LTR MaLR 6 460 -7 485 231 8 17 chr21 38440786 38440903 -6466667 + L1PA15-16 LINE L1 1 116 -6733 850 206 20 108 chr21 38440933 38441229 -6466341 + L1 LINE L1 2210 2479 -3667 643 130 43 136 chr21 38441234 38441311 -6466259 + L1PB3 LINE L1 5659 5742 -412 2817 10 0 0 chr21 38441311 38441614 -6465956 + AluYb8 SINE Alu 16 318 0 643 130 43 136 chr21 38441614 38441685 -6465885 + L1PB3 LINE L1 5742 5789 -365 409 181 0 0 chr21 38441685 38441757 -6465813 + L1PA16 LINE L1 6095 6166 0 643 130 43 136 chr21 38441757 38441791 -6465779 + L1PB3 LINE L1 5789 5825 -329 2490 118 40 8 chr21 38441791 38442165 -6465405 + L1PB3 LINE L1 5769 6154 0 1527 174 26 45 chr21 38442462 38442772 -6464798 - AluJo SINE Alu -8 304 1 316 259 65 29 chr21 38443553 38443692 -6463878 - L1ME4a LINE L1 -3 6118 5975 1287 112 5 5 chr21 38443769 38443956 -6463614 - L1PA14 LINE L1 -2 6159 5973 8346 155 24 11 chr21 38443956 38445718 -6461852 - L1P4 LINE L1 -609 5559 3773 474 314 44 7 chr21 38445744 38446018 -6461552 - L1ME4a LINE L1 -269 5852 5569 533 276 25 7 chr21 38447301 38447462 -6460108 - MIR SINE MIR -62 146 38 227 137 83 30 chr21 38447703 38447871 -6459699 + (TA)n Simple_repeat Simple_repeat 2 178 0 5176 209 111 14 chr21 38447894 38449215 -6458355 + Charlie1a DNA MER1_type 1 1449 -6 548 267 125 11 chr21 38452382 38452558 -6455012 - MIR SINE MIR -50 212 17 2884 97 8 5 chr21 38453103 38453493 -6454077 - L1PA13 LINE L1 -5 6158 5768 10275 188 42 55 chr21 38454050 38456485 -6451085 - L1MC3 LINE L1 -20 8183 5780 844 278 76 18 chr21 38456475 38456817 -6450753 - L1MC3 LINE L1 -2419 4145 3784 * 1006 259 10 7 chr21 38456865 38457162 -6450408 - L1MC3 LINE L1 -3056 3508 3211 374 218 40 0 chr21 38457154 38457255 -6450315 - L1MC3 LINE L1 -5369 676 572 * 25 0 0 0 chr21 38457483 38457508 -6450062 + AT_rich Low_complexity Low_complexity 1 25 0 1052 263 27 46 chr21 38457543 38457856 -6449714 - L1MC3 LINE L1 -5680 365 59 1941 164 0 0 chr21 38457856 38458161 -6449409 - AluJb SINE Alu -7 305 1 1052 263 27 46 chr21 38458161 38458219 -6449351 - L1MC3 LINE L1 -5986 59 1 22 70 0 0 chr21 38459294 38459337 -6448233 + AT_rich Low_complexity Low_complexity 1 43 0 948 127 7 7 chr21 38459394 38459536 -6448034 + L1PA15 LINE L1 6003 6144 -21 23 0 0 0 chr21 38459673 38459696 -6447874 + AT_rich Low_complexity Low_complexity 1 23 0 491 311 17 11 chr21 38460634 38460811 -6446759 + MIR SINE MIR 60 237 -25 196 391 0 0 chr21 38462562 38462649 -6444921 + L2 LINE L2 3186 3272 0 532 315 71 0 chr21 38462944 38463141 -6444429 + MIR SINE MIR 35 245 -17 940 211 143 8 chr21 38463442 38463574 -6443996 - MLT1D LTR MaLR -8 497 384 5125 50 0 0 chr21 38463574 38464159 -6443411 - L1PA7 LINE L1 -1 6153 5569 940 211 143 8 chr21 38464159 38464371 -6443199 - MLT1D LTR MaLR -121 384 21 256 336 47 0 chr21 38464517 38464624 -6442946 - MER5A DNA MER1_type -28 161 50 242 239 220 82 chr21 38466368 38466527 -6441043 - MER5A DNA MER1_type -8 181 1 216 0 0 0 chr21 38466708 38466732 -6440838 + (T)n Simple_repeat Simple_repeat 1 24 0 6537 104 2 10 chr21 38467265 38468507 -6439063 + L1PA14 LINE L1 4910 6144 -17 610 239 13 7 chr21 38468627 38468782 -6438788 + MLT1I LTR MaLR 1 156 -253 227 243 29 71 chr21 38468766 38468836 -6438734 + MLT1J LTR MaLR 139 205 -306 * 228 250 44 29 chr21 38468850 38468918 -6438652 + MLT1J LTR MaLR 135 203 -308 469 301 86 27 chr21 38468936 38469228 -6438342 + MLT1I LTR MaLR 101 409 0 24 53 0 0 chr21 38469616 38469654 -6437916 + AT_rich Low_complexity Low_complexity 1 38 0 668 259 20 0 chr21 38469846 38469993 -6437577 - MER45A DNA AcHobo -28 150 1 2265 115 0 0 chr21 38470527 38470831 -6436739 + AluSx SINE Alu 1 304 -8 1066 193 25 1 chr21 38472227 38472498 -6435072 + LTR54 LTR ERV1 174 480 -30 1777 142 0 76 chr21 38472598 38472914 -6434656 + AluSx SINE Alu 6 297 -15 322 250 26 0 chr21 38473112 38473188 -6434382 + MER81 DNA DNA 34 111 -3 2627 121 0 3 chr21 38473225 38473581 -6433989 - THE1A LTR MaLR 0 355 1 12424 90 18 0 chr21 38473581 38475133 -6432437 - THE1A-int LTR MaLR 0 1580 1 2825 101 0 0 chr21 38475133 38475488 -6432082 - THE1A LTR MaLR 0 355 1 2460 119 14 11 chr21 38475558 38475912 -6431658 + THE1A LTR MaLR 1 355 0 1548 230 58 110 chr21 38477982 38478599 -6428971 + MLT1E LTR MaLR 1 585 -8 24 0 0 0 chr21 38478919 38478943 -6428627 + AT_rich Low_complexity Low_complexity 1 24 0 1857 260 41 89 chr21 38479700 38480474 -6427096 + MER21B LTR ERV1 3 739 -124 471 258 96 10 chr21 38480946 38481155 -6426415 + LTR16A LTR ERVL 184 410 -40 271 350 91 14 chr21 38481296 38481439 -6426131 + L2 LINE L2 3155 3308 -5 1841 256 15 68 chr21 38481779 38482436 -6425134 + MLT1E2 LTR MaLR 5 626 0 310 150 0 0 chr21 38482707 38482772 -6424798 - MLT2D LTR ERVL 0 554 456 201 39 0 0 chr21 38482772 38482798 -6424772 + (GA)n Simple_repeat Simple_repeat 1 26 0 1901 181 49 6 chr21 38482831 38483180 -6424390 - MLT2D LTR ERVL -50 364 1 1700 180 3 16 chr21 38483180 38483487 -6424083 - ERVL-D LTR ERVL -7 5757 5453 992 251 78 39 chr21 38483487 38483818 -6423752 + MER2 DNA MER2_type 1 344 0 261 0 0 0 chr21 38483828 38483857 -6423713 + (CA)n Simple_repeat Simple_repeat 2 30 0 5038 61 3 0 chr21 38484833 38485421 -6422149 + LTR10C LTR ERV1 1 590 -1 256 281 0 6 chr21 38485669 38485751 -6421819 + L2 LINE L2 2903 2982 -290 1446 63 0 0 chr21 38486020 38486194 -6421376 - AluY SINE Alu 0 311 138 337 25 0 0 chr21 38486194 38486234 -6421336 + LTR10C LTR ERV1 431 470 -121 1217 44 0 0 chr21 38486249 38486385 -6421185 - AluY SINE Alu -175 136 1 1534 207 16 12 chr21 38487237 38487556 -6420014 + MER90 LTR ERV1 10 329 -246 382 107 18 0 chr21 38487556 38487612 -6419958 + MSTC LTR MaLR 1 57 -371 1053 221 175 51 chr21 38487616 38488005 -6419565 + MLT2B1 LTR ERVL 28 464 -56 315 0 0 0 chr21 38488011 38488046 -6419524 + (CA)n Simple_repeat Simple_repeat 2 36 0 202 224 0 0 chr21 38488050 38488099 -6419471 + (TA)n Simple_repeat Simple_repeat 2 50 0 345 136 0 11 chr21 38488102 38488167 -6419403 + MLT2B2 LTR ERVL 402 513 -2 638 222 38 65 chr21 38488176 38488361 -6419209 + MLT1B LTR MaLR 1 180 -194 345 159 0 0 chr21 38488366 38488429 -6419141 + CT-rich Low_complexity Low_complexity 2 64 0 711 212 13 13 chr21 38488439 38488590 -6418980 + MLT1B LTR MaLR 193 343 -47 962 207 15 5 chr21 38488671 38488869 -6418701 + MSTC LTR MaLR 229 428 0 1147 229 29 0 chr21 38488869 38489113 -6418457 + MER90 LTR ERV1 364 614 0 346 213 0 0 chr21 38489169 38489230 -6418340 + L2 LINE L2 3211 3271 -1 11223 173 30 22 chr21 38489692 38491275 -6416295 + L1PB3 LINE L1 2761 4378 -1776 1883 132 36 26 chr21 38491275 38491578 -6415992 + AluSx SINE Alu 1 306 -6 11223 173 30 22 chr21 38491578 38493004 -6414566 + L1PB3 LINE L1 4378 5791 -363 269 187 39 7 chr21 38493004 38493159 -6414411 + (TA)n Simple_repeat Simple_repeat 1 160 0 2576 126 6 3 chr21 38493180 38493545 -6414025 + L1PB3 LINE L1 5789 6154 0 1616 162 75 37 chr21 38493573 38493949 -6413621 - Tigger3b DNA MER2_type -840 391 2 2211 120 3 0 chr21 38493973 38494272 -6413298 + AluSq SINE Alu 1 300 -13 269 315 0 11 chr21 38494279 38494368 -6413202 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 255 302 78 16 chr21 38494368 38494497 -6413073 + L2 LINE L2 2870 3006 -307 1351 115 0 26 chr21 38495033 38495225 -6412345 + AluSq SINE Alu 9 195 -118 1562 211 97 44 chr21 38495879 38496314 -6411256 - MLT1C LTR MaLR 0 467 10 343 284 10 10 chr21 38496593 38496695 -6410875 - MLT1C LTR MaLR -58 409 308 637 136 12 2 chr21 38496939 38497060 -6410510 + MSTA LTR MaLR 1 122 -304 1300 168 117 82 chr21 38497919 38498409 -6409161 + MER4A LTR ERV1 1 447 -18 192 339 101 0 chr21 38499540 38499649 -6407921 - MIR SINE MIR -10 252 133 1532 236 43 11 chr21 38499999 38500347 -6407223 - MLT1A1 LTR MaLR -2 363 5 1591 196 0 17 chr21 38501401 38501697 -6405873 + AluJo SINE Alu 1 291 -21 851 90 0 0 chr21 38503991 38504102 -6403468 - AluSg/x SINE Alu -11 298 188 * 1077 115 0 6 chr21 38504101 38504257 -6403313 + AluSg/x SINE Alu 155 309 0 1180 217 47 31 chr21 38504259 38504646 -6402924 + L1M4 LINE L1 4160 4552 -1594 753 228 25 0 chr21 38504647 38504809 -6402761 - MER58B DNA MER1_type -1 340 175 1104 221 124 38 chr21 38504809 38505076 -6402494 + AluJo SINE Alu 1 290 -12 357 82 0 0 chr21 38505078 38505127 -6402443 + (GGA)n Simple_repeat Simple_repeat 1 49 0 273 231 26 77 chr21 38505216 38505294 -6402276 - MER58 DNA MER1_type -150 191 1 6341 76 18 2 chr21 38505699 38506501 -6401069 + L1PA8 LINE L1 5358 6171 -1 1560 195 3 26 chr21 38506540 38506847 -6400723 - AluJo SINE Alu -12 300 1 183 306 0 0 chr21 38507098 38507147 -6400423 - L2 LINE L2 -21 3251 3203 1133 252 82 22 chr21 38507174 38507539 -6400031 + MLT1F1 LTR MaLR 177 563 -4 282 271 94 0 chr21 38507540 38507625 -6399945 + MIR SINE MIR 83 175 -87 25 31 0 0 chr21 38507705 38507737 -6399833 + AT_rich Low_complexity Low_complexity 1 32 0 319 246 80 0 chr21 38508082 38508211 -6399359 - L1MC/D LINE L1 -766 5404 5293 229 188 58 14 chr21 38508294 38508363 -6399207 - L1 LINE L1 -2196 3950 3879 2620 41 0 13 chr21 38508664 38508979 -6398591 + AluY SINE Alu 1 311 0 280 309 81 37 chr21 38509972 38510202 -6397368 + MIR SINE MIR 17 250 -12 237 261 94 82 chr21 38514619 38514864 -6392706 + L1ME LINE L1 4467 4714 -1432 292 338 74 46 chr21 38515091 38515307 -6392263 - MIR SINE MIR 0 262 41 190 223 58 107 chr21 38515375 38515478 -6392092 + L3b LINE CR1 1237 1334 -249 1722 165 7 16 chr21 38515829 38516138 -6391432 + MER44D DNA MER2_type 1 576 -33 397 312 88 62 chr21 38516434 38516699 -6390871 + HAL1b LINE L1 61 338 -1010 2226 119 0 0 chr21 38516699 38517001 -6390569 + AluSg SINE Alu 1 302 -8 397 312 88 62 chr21 38517001 38517075 -6390495 + HAL1b LINE L1 338 409 -939 388 260 251 21 chr21 38517388 38517726 -6389844 + L2 LINE L2 2345 2760 -554 234 298 64 0 chr21 38517855 38517949 -6389621 + L2 LINE L2 2838 2937 -377 189 0 0 0 chr21 38518544 38518565 -6389005 + (T)n Simple_repeat Simple_repeat 1 21 0 474 277 74 35 chr21 38518806 38519062 -6388508 + L1ME LINE L1 5417 5682 -439 2252 88 24 3 chr21 38519099 38519394 -6388176 - AluY SINE Alu -10 301 1 376 264 51 92 chr21 38519574 38519866 -6387704 + MLT1J LTR MaLR 159 438 -73 1724 90 0 26 chr21 38519962 38520196 -6387374 + AluSg/x SINE Alu 66 293 -17 310 313 65 42 chr21 38520620 38520837 -6386733 + L1ME LINE L1 5320 5541 -580 2336 105 3 0 chr21 38522908 38523214 -6384356 + AluSp SINE Alu 1 307 -6 442 377 34 0 chr21 38524172 38524411 -6383159 + MIR SINE MIR 11 257 -5 2210 109 3 7 chr21 38524437 38524739 -6382831 - AluSg1 SINE Alu -8 301 1 183 312 170 7 chr21 38526632 38526773 -6380797 + L2 LINE L2 2422 2585 -729 993 227 0 0 chr21 38527081 38527266 -6380304 - MER5A DNA MER1_type -2 187 3 521 327 14 9 chr21 38527266 38527483 -6380087 + LTR16C LTR ERVL 274 491 0 462 408 77 10 chr21 38527483 38528118 -6379452 + L2 LINE L2 2587 3263 -9 2187 98 95 18 chr21 38528542 38528880 -6378690 + THE1B LTR MaLR 1 364 0 1062 282 100 44 chr21 38529572 38530054 -6377516 + L2 LINE L2 2805 3313 0 3924 157 18 59 chr21 38530639 38531465 -6376105 - Tigger1 DNA MER2_type -1605 813 22 2083 148 0 0 chr21 38531466 38531776 -6375794 + AluSx SINE Alu 1 310 -2 13420 28 1 1 chr21 38531781 38533442 -6374128 - L1PA3 LINE L1 -975 5171 3511 7619 27 1 2 chr21 38533442 38534454 -6373116 + L1PA3 LINE L1 5142 6152 -3 318 359 23 23 chr21 38534813 38535069 -6372501 - L1MEc LINE L1 -5951 445 190 1201 316 31 42 chr21 38535305 38535976 -6371594 + L2 LINE L2 1543 2206 -1108 663 343 59 0 chr21 38536045 38536348 -6371222 + L2 LINE L2 2474 2794 -520 685 250 6 12 chr21 38536384 38536548 -6371022 - MER5B DNA MER1_type -14 164 2 390 274 8 51 chr21 38536597 38536714 -6370856 - MER5B DNA MER1_type -64 114 3 231 274 75 19 chr21 38537665 38537771 -6369799 - MIR3 SINE MIR 0 208 97 243 0 0 0 chr21 38538292 38538319 -6369251 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr21 38538949 38538970 -6368600 + AT_rich Low_complexity Low_complexity 1 21 0 1720 170 10 13 chr21 38539189 38539501 -6368069 + AluJo SINE Alu 1 311 -1 205 317 69 20 chr21 38539948 38540049 -6367521 - MIR SINE MIR -81 181 76 323 244 34 42 chr21 38540378 38540497 -6367073 - L2 LINE L2 0 3313 3196 432 209 173 18 chr21 38541112 38541222 -6366348 + MIR SINE MIR 19 145 -117 190 229 0 0 chr21 38541251 38541286 -6366284 - MER5A DNA MER1_type 0 189 155 2147 115 0 16 chr21 38541475 38541780 -6365790 + AluSx SINE Alu 1 300 -12 23 54 0 0 chr21 38542437 38542474 -6365096 + AT_rich Low_complexity Low_complexity 1 37 0 203 293 40 13 chr21 38543334 38543409 -6364161 + MIR SINE MIR 76 152 -110 2350 92 0 13 chr21 38543874 38544189 -6363381 - AluSq SINE Alu 0 313 3 1119 15 0 0 chr21 38544304 38544438 -6363132 - L1PA3 LINE L1 -272 5883 5750 2121 66 7 0 chr21 38544438 38544705 -6362865 + L1PA3 LINE L1 5880 6155 0 252 86 0 0 chr21 38545787 38545822 -6361748 + (TG)n Simple_repeat Simple_repeat 1 35 0 1481 184 48 7 chr21 38545822 38546132 -6361438 - L1M2 LINE L1 -533 5779 5457 2591 99 32 0 chr21 38546189 38546561 -6361009 + L1PA10 LINE L1 5774 6157 -11 21 36 0 0 chr21 38546849 38546877 -6360693 + AT_rich Low_complexity Low_complexity 1 28 0 2024 122 27 43 chr21 38546882 38547252 -6360318 - THE1B LTR MaLR 0 364 1 282 342 118 29 chr21 38547500 38547772 -6359798 + L2 LINE L2 2124 2419 -895 2257 89 0 20 chr21 38548880 38549183 -6358387 - AluSq SINE Alu -16 297 1 909 277 140 3 chr21 38549270 38549649 -6357921 + LTR16A LTR ERVL 13 443 -7 2431 103 3 0 chr21 38550180 38550539 -6357031 + AluSq SINE Alu 1 360 0 370 284 140 9 chr21 38552029 38552258 -6355312 + L1ME LINE L1 5383 5641 -521 27 0 0 0 chr21 38552414 38552441 -6355129 + AT_rich Low_complexity Low_complexity 1 27 0 350 282 112 84 chr21 38552829 38553212 -6354358 + L3 LINE CR1 1183 1576 -1 331 209 33 33 chr21 38553231 38553322 -6354248 - L1MC4 LINE L1 -1339 6703 6613 2197 141 32 28 chr21 38553735 38554168 -6353402 - L1MA9 LINE L1 -1825 4321 3887 4842 157 34 60 chr21 38554180 38555714 -6351856 + L1MA9 LINE L1 4315 5800 -512 2036 93 0 0 chr21 38555714 38556035 -6351535 + AluSc SINE Alu 23 343 0 4842 157 34 60 chr21 38556035 38556506 -6351064 + L1MA9 LINE L1 5800 6282 -30 508 119 65 0 chr21 38556611 38556779 -6350791 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chr21 38558835 38558857 -6348713 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr21 38559676 38559713 -6347857 + AT_rich Low_complexity Low_complexity 1 37 0 1750 143 4 0 chr21 38559740 38559998 -6347572 - AluSx SINE Alu -28 284 26 478 216 0 21 chr21 38560114 38560211 -6347359 - AluJo/FRAM SINE Alu -80 232 138 230 213 0 0 chr21 38560211 38560258 -6347312 - Alu SINE Alu -120 182 136 1825 285 60 40 chr21 38560499 38560995 -6346575 + L2 LINE L2 2175 2698 -615 832 211 0 34 chr21 38560995 38561170 -6346400 - FAM SINE Alu -6 169 1 1825 285 60 40 chr21 38561170 38561586 -6345984 + L2 LINE L2 2698 3104 -209 266 189 81 14 chr21 38561763 38561837 -6345733 + MLT1K LTR MaLR 510 588 0 356 345 7 14 chr21 38561927 38562072 -6345498 + L1ME LINE L1 5602 5745 -376 3081 259 30 18 chr21 38562092 38563068 -6344502 + Charlie1a DNA MER1_type 6 992 -463 471 276 12 49 chr21 38563093 38563256 -6344314 + L2 LINE L2 3156 3312 -1 194 286 36 36 chr21 38563763 38563847 -6343723 + MIR SINE MIR 28 111 -97 457 44 176 0 chr21 38566159 38566227 -6341343 - MADE1 DNA Mariner 0 80 1 534 212 8 0 chr21 38566510 38566628 -6340942 + MER94 DNA DNA 1 119 -15 806 221 48 16 chr21 38567809 38568058 -6339512 - L1ME2 LINE L1 -13 6962 6706 732 260 75 12 chr21 38568077 38568408 -6339162 - L1MC4 LINE L1 -240 7802 7451 336 211 19 0 chr21 38568415 38568519 -6339051 - L1ME2 LINE L1 -776 6199 6094 249 132 19 0 chr21 38568670 38568723 -6338847 - L1ME2 LINE L1 -917 6040 5987 381 278 38 33 chr21 38568737 38568949 -6338621 - L1ME2 LINE L1 -1034 5923 5711 243 188 0 0 chr21 38568958 38569006 -6338564 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 831 192 78 6 chr21 38569063 38569230 -6338340 - AluJb SINE Alu -128 184 6 1593 268 56 9 chr21 38569254 38570000 -6337570 - L1ME2 LINE L1 -1572 5385 4605 432 271 158 35 chr21 38570045 38570172 -6337398 - L1ME2 LINE L1 -4346 2792 2682 637 28 66 9 chr21 38570172 38570278 -6337292 + T-rich Low_complexity Low_complexity 2 113 0 1956 130 18 0 chr21 38570280 38570557 -6337013 - AluSx SINE Alu -30 282 1 432 271 158 35 chr21 38570557 38570710 -6336860 - L1ME2 LINE L1 -4456 2682 2474 880 269 50 44 chr21 38570759 38571671 -6335899 - L1ME2 LINE L1 -4672 2466 1373 651 193 24 72 chr21 38573227 38573393 -6334177 + MER20 DNA MER1_type 7 164 -55 2190 92 11 0 chr21 38573395 38573676 -6333894 + AluSp SINE Alu 19 302 -11 2260 97 13 0 chr21 38575218 38575518 -6332052 + AluY SINE Alu 1 304 -7 212 188 0 0 chr21 38575825 38575857 -6331713 - L2 LINE L2 -15 3257 3226 204 317 24 24 chr21 38575985 38576067 -6331503 - MIR SINE MIR -111 151 70 192 40 0 0 chr21 38576067 38576092 -6331478 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 395 291 36 9 chr21 38576095 38576315 -6331255 + L1MEc LINE L1 1325 1550 -4846 315 67 0 117 chr21 38576412 38576472 -6331098 - L1PA7 LINE L1 -8 6146 6094 2300 80 8 14 chr21 38576472 38576837 -6330733 + L1P LINE L1 4968 5330 -816 861 163 58 41 chr21 38577236 38577408 -6330162 - FRAM SINE Alu -1 175 1 944 53 76 15 chr21 38578386 38578517 -6329053 + MER85 DNA T2_type 1 139 0 184 200 105 95 chr21 38579080 38579175 -6328395 + MIR3 SINE MIR 65 160 -48 325 267 92 50 chr21 38579572 38579692 -6327878 + MIR SINE MIR 22 146 -62 962 224 11 0 chr21 38580449 38580713 -6326857 + L1MA4 LINE L1 6027 6293 -7 21 0 0 0 chr21 38580717 38580738 -6326832 + AT_rich Low_complexity Low_complexity 1 21 0 887 191 0 0 chr21 38580738 38580890 -6326680 - FRAM SINE Alu -24 152 1 2512 69 0 0 chr21 38580926 38581232 -6326338 + AluY SINE Alu 1 306 -5 426 279 59 99 chr21 38581323 38581646 -6325924 - L2 LINE L2 0 3313 3004 1684 166 37 11 chr21 38582183 38582532 -6325038 - L1MA9 LINE L1 -344 5968 5611 1104 154 89 72 chr21 38582528 38582747 -6324823 + L1MA9 LINE L1 6012 6239 -73 * 180 0 0 0 chr21 38582747 38582767 -6324803 + (TA)n Simple_repeat Simple_repeat 2 21 0 1104 154 89 72 chr21 38582767 38582839 -6324731 + L1MA9 LINE L1 6239 6308 -4 331 261 100 100 chr21 38582846 38583145 -6324425 + MLT1J LTR MaLR 149 447 -64 1664 47 14 0 chr21 38584022 38584233 -6323337 + L1PA4 LINE L1 5942 6155 0 1415 195 85 28 chr21 38584633 38584883 -6322687 + L1MB7 LINE L1 4901 5135 -1031 2176 105 17 0 chr21 38584883 38585178 -6322392 + AluSx SINE Alu 1 300 -12 1415 195 85 28 chr21 38585178 38585539 -6322031 + L1MB7 LINE L1 5135 5549 -617 1581 248 94 4 chr21 38585768 38586321 -6321249 + L1MB7 LINE L1 5572 6174 -10 3928 137 13 23 chr21 38586346 38586482 -6321088 - L1PA16 LINE L1 -1 6165 6029 2417 77 0 10 chr21 38586482 38586792 -6320778 - AluY SINE Alu -4 307 1 3928 137 13 23 chr21 38586792 38587342 -6320228 - L1PA16 LINE L1 -137 6029 5486 30 27 0 0 chr21 38587485 38587522 -6320048 + AT_rich Low_complexity Low_complexity 1 37 0 2109 114 3 10 chr21 38587697 38588021 -6319549 + AluSc SINE Alu 1 309 0 2597 19 3 0 chr21 38588304 38588619 -6318951 - L1PA3 LINE L1 -173 5982 5667 302 23 0 0 chr21 38588619 38588658 -6318912 + L1PA3 LINE L1 6113 6155 0 314 274 45 54 chr21 38588918 38589141 -6318429 - L1MC5 LINE L1 -779 7182 6962 234 266 0 0 chr21 38589160 38589239 -6318331 + (TA)n Simple_repeat Simple_repeat 2 80 0 764 250 59 21 chr21 38589247 38589582 -6317988 - L1MC5 LINE L1 -981 7061 6611 2271 121 3 0 chr21 38589599 38589905 -6317665 - AluSq SINE Alu 0 313 7 7511 29 5 0 chr21 38589975 38591046 -6316524 + L1PA4 LINE L1 5079 6153 -2 311 271 0 4 chr21 38591050 38591141 -6316429 + L1MC3 LINE L1 6571 6646 -1139 26 30 0 0 chr21 38591415 38591448 -6316122 + AT_rich Low_complexity Low_complexity 1 33 0 2204 143 62 30 chr21 38591448 38591961 -6315609 + MLT2A2 LTR ERVL 1 554 0 268 266 68 62 chr21 38592379 38592718 -6314852 - HAL1b LINE L1 -948 400 60 354 80 0 0 chr21 38595730 38595780 -6311790 + (TG)n Simple_repeat Simple_repeat 2 51 0 1743 154 0 79 chr21 38596986 38597304 -6310266 - AluJb SINE Alu -19 293 1 937 70 78 0 chr21 38598153 38598282 -6309288 - MER85 DNA T2_type 0 139 1 229 325 91 0 chr21 38599703 38599780 -6307790 - L2 LINE L2 -38 3234 3151 351 341 50 17 chr21 38600135 38600314 -6307256 + MIR SINE MIR 20 204 -58 720 109 83 113 chr21 38600337 38600567 -6307003 + L1MA7 LINE L1 6064 6286 -5 27 0 0 0 chr21 38600567 38600594 -6306976 + AT_rich Low_complexity Low_complexity 1 27 0 1529 214 116 3 chr21 38600977 38601313 -6306257 + MLT1A2 LTR MaLR 1 374 0 263 364 224 0 chr21 38601470 38601819 -6305751 + L2 LINE L2 2478 2904 -410 311 284 63 0 chr21 38602022 38602117 -6305453 + L2 LINE L2 3172 3272 0 405 129 35 21 chr21 38602750 38603099 -6304471 + (TA)n Simple_repeat Simple_repeat 1 354 0 959 132 25 59 chr21 38603234 38603438 -6304132 + MLT1C LTR MaLR 2 198 -269 676 271 28 0 chr21 38603489 38603670 -6303900 - MIR SINE MIR -41 221 36 388 276 115 112 chr21 38604606 38604938 -6302632 + L1ME4a LINE L1 5409 5745 -376 2840 6 0 6 chr21 38604938 38605251 -6302319 - AluY SINE Alu 0 311 1 388 276 115 112 chr21 38605251 38605542 -6302028 + L1ME4a LINE L1 5745 6034 -87 2692 26 0 0 chr21 38607140 38607448 -6300122 + AluY SINE Alu 1 308 -3 347 191 24 187 chr21 38608115 38608409 -6299161 - MER112 DNA MER1_type -10 250 5 184 307 39 39 chr21 38608601 38608728 -6298842 + L2 LINE L2 2420 2546 -768 2092 119 6 10 chr21 38609406 38609718 -6297852 + AluSx SINE Alu 1 311 -1 623 266 100 14 chr21 38609997 38610286 -6297284 - MER113 DNA MER1_type? -207 314 1 2159 105 3 0 chr21 38610684 38610970 -6296600 + AluSp SINE Alu 1 287 -26 22 35 0 0 chr21 38611302 38611331 -6296239 + AT_rich Low_complexity Low_complexity 1 29 0 310 289 61 72 chr21 38611489 38611669 -6295901 - L1MC4a LINE L1 -1851 5957 5780 439 191 61 26 chr21 38611687 38611802 -6295768 + L2 LINE L2 3195 3313 0 24 0 0 0 chr21 38613161 38613185 -6294385 + AT_rich Low_complexity Low_complexity 1 24 0 268 316 59 7 chr21 38613386 38613538 -6294032 + L1MEd LINE L1 4 163 -5956 669 258 125 72 chr21 38613794 38614507 -6293063 + L1MEd LINE L1 474 1224 -4895 1548 207 101 19 chr21 38616853 38617278 -6290292 - MLT1C LTR MaLR -3 464 5 276 223 115 131 chr21 38619892 38620404 -6287166 - L1ME4a LINE L1 -1 6120 5617 27 0 0 0 chr21 38621590 38621617 -6285953 + AT_rich Low_complexity Low_complexity 1 27 0 527 187 0 8 chr21 38622989 38623112 -6284458 + (CTA)n Simple_repeat Simple_repeat 3 124 0 2672 130 9 13 chr21 38623115 38623548 -6284022 + LOR1a LTR ERV1 1 431 -66 2564 130 14 9 chr21 38623548 38623972 -6283598 + MSTB LTR MaLR 1 426 0 424 136 15 0 chr21 38623972 38624038 -6283532 + LOR1a LTR ERV1 431 497 0 716 220 3 0 chr21 38624038 38624344 -6283226 + (CTA)n Simple_repeat Simple_repeat 1 307 0 226 304 0 89 chr21 38624817 38624929 -6282641 - MIR3 SINE MIR -102 106 5 1596 107 0 0 chr21 38624982 38625187 -6282383 - AluSc SINE Alu 0 309 105 359 136 0 0 chr21 38625187 38625246 -6282324 - AluSc SINE Alu -243 59 1 1633 203 4 0 chr21 38625347 38625671 -6281899 + AluJo SINE Alu 1 325 0 270 302 35 9 chr21 38626094 38626210 -6281360 - MIR SINE MIR -5 257 139 1047 183 63 16 chr21 38626479 38626852 -6280718 - Charlie1a DNA MER1_type -20 1435 996 299 209 0 0 chr21 38626861 38626928 -6280642 - AluJo SINE Alu 0 302 236 856 192 0 14 chr21 38626929 38627075 -6280495 - AluJo SINE Alu -168 144 1 3221 197 94 47 chr21 38627081 38628005 -6279565 - Charlie1a DNA MER1_type -487 968 1 2457 56 0 31 chr21 38628408 38628727 -6278843 - AluY SINE Alu -2 309 1 25 31 0 0 chr21 38629024 38629056 -6278514 + AT_rich Low_complexity Low_complexity 1 32 0 986 143 0 0 chr21 38629659 38629799 -6277771 - AluJb SINE Alu -15 297 158 202 194 0 0 chr21 38629950 38629986 -6277584 + (CATG)n Simple_repeat Simple_repeat 1 36 0 308 24 24 0 chr21 38629988 38630029 -6277541 + (CA)n Simple_repeat Simple_repeat 1 42 0 235 313 89 27 chr21 38631019 38631131 -6276439 - L2 LINE L2 -5 3267 3149 4944 156 21 49 chr21 38631771 38632073 -6275497 + L1MA8 LINE L1 5052 5361 -930 2054 148 0 0 chr21 38632073 38632371 -6275199 + AluSx SINE Alu 1 298 -14 4944 156 21 49 chr21 38632371 38632944 -6274626 + L1MA8 LINE L1 5361 5891 -400 1816 141 3 87 chr21 38632944 38633277 -6274293 - AluSx SINE Alu -7 305 1 4944 156 21 49 chr21 38633277 38633662 -6273908 + L1MA8 LINE L1 5891 6285 -6 399 330 38 26 chr21 38633699 38633963 -6273607 + MLT1H LTR MaLR 39 305 -244 287 289 29 46 chr21 38634088 38634261 -6273309 + MLT1H LTR MaLR 417 586 -4 259 217 33 0 chr21 38634834 38634894 -6272676 + L3 LINE CR1 1062 1123 -454 343 316 103 7 chr21 38635609 38635764 -6271806 + L1ME4a LINE L1 37 206 -6190 2443 276 69 58 chr21 38635770 38637534 -6270036 + L1ME4a LINE L1 251 2045 -4351 432 0 0 0 chr21 38637534 38637582 -6269988 + (CA)n Simple_repeat Simple_repeat 2 49 0 2443 276 69 58 chr21 38637582 38637945 -6269625 + L1ME4a LINE L1 2045 2402 -3994 343 225 105 29 chr21 38638009 38638218 -6269352 + L1ME4a LINE L1 3279 3503 -2712 1924 137 21 46 chr21 38638218 38638590 -6268980 + THE1B LTR MaLR 1 363 -1 9166 99 17 1 chr21 38638591 38639914 -6267656 + THE1B-int LTR MaLR 1 1345 -235 2055 258 46 40 chr21 38639913 38640885 -6266685 + L1ME4a LINE L1 4643 5621 -614 * 276 252 54 48 chr21 38640896 38641043 -6266527 + MER112 DNA MER1_type 113 260 0 922 27 0 0 chr21 38643592 38643704 -6263866 - L1PA4 LINE L1 -3 6152 6041 204 327 75 9 chr21 38644204 38644311 -6263259 - MIR SINE MIR -56 206 93 332 306 111 95 chr21 38644960 38645343 -6262227 + HAL1 LINE L1 939 1314 -1193 2215 81 0 37 chr21 38645343 38645639 -6261931 - AluY SINE Alu -26 285 1 332 306 111 95 chr21 38645639 38646003 -6261567 + HAL1 LINE L1 1314 1698 -809 28 0 0 0 chr21 38646195 38646223 -6261347 + AT_rich Low_complexity Low_complexity 1 28 0 317 315 115 12 chr21 38646469 38646634 -6260936 + L1ME4a LINE L1 5874 6055 -135 2272 176 36 5 chr21 38646903 38647352 -6260218 + MLT1C LTR MaLR 1 463 -4 743 258 16 5 chr21 38648410 38648604 -6258966 - MER117 DNA MER1_type -1 196 1 2071 128 0 39 chr21 38648706 38649018 -6258552 + AluSx SINE Alu 1 300 -12 1709 203 21 10 chr21 38649748 38650137 -6257433 + MER50 LTR ERV1 342 734 0 948 252 46 55 chr21 38650548 38650964 -6256606 + MLT1C LTR MaLR 2 413 -54 262 262 10 19 chr21 38651137 38651186 -6256384 - MLT1C LTR MaLR 0 467 419 1771 145 18 14 chr21 38651186 38651468 -6256102 + AluSq SINE Alu 17 299 -14 262 262 10 19 chr21 38651468 38651521 -6256049 - MLT1C LTR MaLR -48 419 366 1142 66 0 7 chr21 38651602 38651739 -6255831 + AluSq SINE Alu 1 136 -176 631 168 59 0 chr21 38651749 38651868 -6255702 + L1PA8 LINE L1 6040 6165 -7 258 100 0 10 chr21 38651907 38652047 -6255523 + AluSq SINE Alu 121 303 0 360 266 23 8 chr21 38652165 38652293 -6255277 + (TA)n Simple_repeat Simple_repeat 2 131 0 504 0 0 0 chr21 38654593 38654649 -6252921 + (TG)n Simple_repeat Simple_repeat 1 56 0 2043 118 4 0 chr21 38654649 38654928 -6252642 - AluSp SINE Alu -33 280 1 216 0 0 0 chr21 38655192 38655216 -6252354 + (CA)n Simple_repeat Simple_repeat 2 25 0 248 276 51 61 chr21 38655358 38655456 -6252114 - L2 LINE L2 -22 3250 3154 2348 104 0 3 chr21 38655619 38655926 -6251644 - AluSp SINE Alu -7 306 1 499 279 231 10 chr21 38655927 38656135 -6251435 + MIR SINE MIR 9 262 0 3126 88 20 16 chr21 38656597 38657039 -6250531 + MLT2A1 LTR ERVL 1 444 0 193 254 48 16 chr21 38657099 38657162 -6250408 + MIR SINE MIR 82 146 -62 507 248 34 13 chr21 38657563 38657712 -6249858 + Tigger2a DNA MER2_type 1 152 -282 439 91 45 0 chr21 38657714 38657780 -6249790 + Tigger2a DNA MER2_type 116 184 -260 304 75 0 0 chr21 38657780 38657820 -6249750 + Tigger2a DNA MER2_type 123 162 -282 371 82 0 0 chr21 38657820 38657869 -6249701 + Tigger2a DNA MER2_type 114 162 -282 1548 168 48 3 chr21 38657869 38658184 -6249386 + Tigger2a DNA MER2_type 114 442 -2 1439 212 100 54 chr21 38658185 38658276 -6249294 - MLT1D LTR MaLR -1 504 419 1944 130 21 11 chr21 38658276 38658560 -6249010 + AluSx SINE Alu 1 287 -25 242 29 29 0 chr21 38658564 38658599 -6248971 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1439 212 100 54 chr21 38658599 38658984 -6248586 - MLT1D LTR MaLR -88 417 1 479 286 84 6 chr21 38659098 38659276 -6248294 - MIR SINE MIR -56 206 15 2144 103 34 0 chr21 38659435 38659726 -6247844 + AluY SINE Alu 1 301 -10 272 183 0 0 chr21 38661718 38661778 -6245792 - L1M4 LINE L1 -1109 5037 4978 486 132 11 11 chr21 38661778 38661869 -6245701 + L1PA15 LINE L1 6068 6158 -7 836 209 0 15 chr21 38661921 38662122 -6245448 - L1M4 LINE L1 -1175 4971 4774 2140 162 52 27 chr21 38662122 38662530 -6245040 + MER47B DNA MER2_type 1 418 0 536 253 47 24 chr21 38663015 38663185 -6244385 - MER45A DNA AcHobo 0 178 5 526 321 42 13 chr21 38663740 38663927 -6243643 - MIR SINE MIR 0 262 65 2220 114 3 0 chr21 38663927 38664235 -6243335 + AluSq SINE Alu 1 309 -4 526 321 42 13 chr21 38664235 38664284 -6243286 - MIR SINE MIR -197 65 19 322 277 232 7 chr21 38664426 38664581 -6242989 + MIR3 SINE MIR 1 190 -18 381 286 16 40 chr21 38664650 38664776 -6242794 + L2 LINE L2 3191 3313 0 217 216 62 124 chr21 38665203 38665300 -6242270 + MER91B DNA MER1_type 35 125 -65 311 320 80 0 chr21 38665319 38665419 -6242151 + MER91B DNA MER1_type 83 190 0 * 704 265 40 15 chr21 38665419 38665612 -6241958 + MIR SINE MIR 65 262 0 2048 122 71 37 chr21 38665964 38666316 -6241254 - THE1B LTR MaLR 0 364 1 187 278 202 69 chr21 38666827 38667000 -6240570 + MIR SINE MIR 29 224 -38 233 266 202 69 chr21 38667050 38667223 -6240347 + MIR SINE MIR 29 224 -38 187 280 77 77 chr21 38668259 38668402 -6239168 + L2 LINE L2 3082 3224 -89 200 241 35 0 chr21 38668581 38668639 -6238931 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 57 28 0 0 chr21 38668706 38668777 -6238793 + AT_rich Low_complexity Low_complexity 1 71 0 2221 102 26 7 chr21 38668865 38669168 -6238402 - AluSg SINE Alu -1 309 1 334 281 156 36 chr21 38670981 38671148 -6236422 - MIR3 SINE MIR -4 204 18 1382 217 3 3 chr21 38671352 38671638 -6235932 - MLT1A1 LTR MaLR -79 286 1 2108 234 19 11 chr21 38674457 38674928 -6232642 + MLT2B3 LTR ERVL 1 475 -79 203 195 52 13 chr21 38674935 38675012 -6232558 + (CAAT)n Simple_repeat Simple_repeat 2 81 0 1657 210 46 52 chr21 38675198 38675698 -6231872 - MLT1D LTR MaLR -8 497 1 937 76 0 8 chr21 38678143 38678274 -6229296 - MER85 DNA T2_type -9 130 1 279 0 0 0 chr21 38678596 38678627 -6228943 + (CA)n Simple_repeat Simple_repeat 2 32 0 468 0 0 0 chr21 38679399 38679451 -6228119 + (TG)n Simple_repeat Simple_repeat 1 52 0 239 345 84 21 chr21 38680617 38680759 -6226811 + MIR SINE MIR 56 206 -56 2128 135 0 6 chr21 38681843 38682155 -6225415 + AluSx SINE Alu 1 310 -2 322 85 34 0 chr21 38682165 38682224 -6225346 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1042 37 30 0 chr21 38682325 38682460 -6225110 + L1PA4 LINE L1 6017 6155 0 27 0 0 0 chr21 38682476 38682503 -6225067 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr21 38682632 38682662 -6224908 + AT_rich Low_complexity Low_complexity 1 30 0 243 378 78 0 chr21 38682687 38682880 -6224690 + HAL1b LINE L1 400 607 -741 1904 161 3 3 chr21 38683588 38683920 -6223650 + AluJb SINE Alu 1 332 0 300 316 72 68 chr21 38684213 38684741 -6222829 + L1M4 LINE L1 2315 2844 -3302 421 336 33 30 chr21 38684755 38685071 -6222499 + L1M4 LINE L1 2963 3291 -2855 598 306 82 28 chr21 38685241 38685633 -6221937 + L1MC4a LINE L1 2885 3297 -2849 418 326 17 28 chr21 38685655 38685833 -6221737 + L1MC4a LINE L1 4135 4310 -1836 2523 73 15 0 chr21 38686317 38686646 -6220924 + L1PA10 LINE L1 5824 6157 -11 26 0 0 0 chr21 38686675 38686701 -6220869 + AT_rich Low_complexity Low_complexity 1 26 0 683 333 44 10 chr21 38686971 38687490 -6220080 + L1MC4a LINE L1 5291 5827 -1981 390 267 133 0 chr21 38687771 38687906 -6219664 - MIR SINE MIR -83 179 27 1293 212 77 62 chr21 38687918 38688414 -6219156 + MLT1D LTR MaLR 1 503 -2 513 310 38 11 chr21 38688612 38688796 -6218774 + MER5A DNA MER1_type 1 189 0 384 290 103 7 chr21 38688844 38688989 -6218581 + MER5B DNA MER1_type 20 178 0 575 261 99 12 chr21 38688997 38689158 -6218412 - MER5B DNA MER1_type 0 178 4 329 182 26 0 chr21 38689410 38689487 -6218083 + MER116 DNA Mariner 2 80 0 264 324 165 26 chr21 38689697 38690037 -6217533 + L2 LINE L2 112 498 -2816 337 280 163 42 chr21 38690209 38690541 -6217029 + L2 LINE L2 1940 2311 -1003 191 262 107 41 chr21 38690524 38690646 -6216924 - L2 LINE L2 -1 3312 3183 * 235 245 32 43 chr21 38690675 38690769 -6216801 - L2 LINE L2 -126 3187 3095 500 340 119 23 chr21 38690908 38691102 -6216468 + L2 LINE L2 2454 2628 -685 2149 136 0 0 chr21 38691102 38691397 -6216173 - AluSc SINE Alu -14 295 1 500 340 119 23 chr21 38691397 38691767 -6215803 + L2 LINE L2 2628 3074 -239 188 222 0 44 chr21 38691787 38691832 -6215738 - MIR SINE MIR -129 133 91 1235 114 95 0 chr21 38691909 38692119 -6215451 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr21 38692238 38692259 -6215311 + AT_rich Low_complexity Low_complexity 1 21 0 519 342 92 36 chr21 38692742 38693099 -6214471 - L3 LINE CR1 -10 1567 1191 2056 115 1 88 chr21 38694162 38694700 -6212870 + MER4A LTR ERV1 1 462 -3 221 196 39 0 chr21 38694728 38694779 -6212791 + GA-rich Low_complexity Low_complexity 2 54 0 327 290 108 43 chr21 38695161 38695533 -6212037 + HAL1 LINE L1 1151 1546 -961 490 289 36 0 chr21 38695593 38695759 -6211811 + HAL1 LINE L1 1637 1808 -699 282 178 220 34 chr21 38695905 38696023 -6211547 + HAL1 LINE L1 2075 2214 -293 21 0 0 0 chr21 38696485 38696506 -6211064 + AT_rich Low_complexity Low_complexity 1 21 0 1748 167 3 11 chr21 38696923 38697210 -6210360 - AluJb SINE Alu -25 287 3 546 298 16 11 chr21 38697856 38698047 -6209523 - MIR SINE MIR -43 219 28 2186 38 0 0 chr21 38698155 38698417 -6209153 - L1PA5 LINE L1 -3 6151 5890 1621 204 63 0 chr21 38699978 38700345 -6207225 + MLT1B LTR MaLR 1 390 0 2221 97 0 3 chr21 38700369 38700657 -6206913 + AluSx SINE Alu 1 287 -25 26 0 0 0 chr21 38700657 38700683 -6206887 + AT_rich Low_complexity Low_complexity 1 26 0 2027 88 0 15 chr21 38701942 38702225 -6205345 + AluSg SINE Alu 34 310 0 322 260 126 96 chr21 38702599 38702817 -6204753 + MIR SINE MIR 20 236 -26 1580 256 41 48 chr21 38704208 38704818 -6202752 - L1ME3A LINE L1 -5 6165 5560 207 189 0 0 chr21 38705023 38705060 -6202510 + (CTA)n Simple_repeat Simple_repeat 1 37 0 1813 159 21 3 chr21 38705090 38705417 -6202153 - MER44D DNA MER2_type 0 609 7 360 306 68 7 chr21 38705442 38705589 -6201981 - MIR SINE MIR -29 233 78 2600 98 14 0 chr21 38705770 38706129 -6201441 - THE1B LTR MaLR 0 364 1 506 167 135 24 chr21 38707331 38707457 -6200113 + MSTD LTR MaLR 224 332 -64 1803 76 0 4 chr21 38707566 38707791 -6199779 + AluY SINE Alu 1 224 -87 831 75 0 50 chr21 38707791 38707911 -6199659 + AluY SINE Alu 191 304 -7 25 0 0 0 chr21 38708808 38708833 -6198737 + AT_rich Low_complexity Low_complexity 1 25 0 490 198 0 9 chr21 38710833 38710949 -6196621 + LTR37A LTR ERV1 288 402 -24 2646 19 6 13 chr21 38711588 38711900 -6195670 - AluY SINE Alu -1 310 1 38 39 0 0 chr21 38711978 38712030 -6195540 + AT_rich Low_complexity Low_complexity 1 52 0 194 108 54 0 chr21 38712169 38712206 -6195364 + (CATA)n Simple_repeat Simple_repeat 3 41 0 253 259 0 0 chr21 38712785 38712843 -6194727 + GA-rich Low_complexity Low_complexity 3 60 0 264 200 0 0 chr21 38712844 38712904 -6194666 + G-rich Low_complexity Low_complexity 4 63 0 336 48 0 0 chr21 38713591 38713633 -6193937 + (TC)n Simple_repeat Simple_repeat 2 43 0 * 381 93 0 0 chr21 38713632 38713686 -6193884 + (TG)n Simple_repeat Simple_repeat 1 54 0 288 0 0 0 chr21 38713685 38713717 -6193853 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 428 342 146 7 chr21 38713812 38714230 -6193340 - L2 LINE L2 -462 2852 2377 319 250 250 7 chr21 38714315 38714455 -6193115 - MER5A DNA MER1_type -6 183 10 1435 209 59 57 chr21 38715434 38715851 -6191719 + MLT2C2 LTR ERVL 1 421 -43 2779 10 0 3 chr21 38715851 38716160 -6191410 + AluYa5 SINE Alu 1 308 -3 1435 209 59 57 chr21 38716160 38716197 -6191373 + MLT2C2 LTR ERVL 421 456 -8 2589 112 0 6 chr21 38716284 38716650 -6190920 - THE1B LTR MaLR 0 364 1 994 315 44 67 chr21 38717553 38718476 -6189094 + L2 LINE L2 2411 3312 -1 1955 245 79 65 chr21 38718730 38719938 -6187632 + L1MA8 LINE L1 1042 2231 -4153 2408 93 0 3 chr21 38719938 38720238 -6187332 + AluSq SINE Alu 1 299 -14 219 69 0 0 chr21 38720238 38720267 -6187303 + (TA)n Simple_repeat Simple_repeat 2 30 0 1955 245 79 65 chr21 38720267 38720690 -6186880 + L1MA8 LINE L1 2230 2496 -3888 10574 173 53 13 chr21 38720703 38724121 -6183449 + L1MA8 LINE L1 2969 6527 0 334 252 289 7 chr21 38724368 38724503 -6183067 + MIR SINE MIR 4 176 -86 379 348 31 12 chr21 38724609 38724770 -6182800 + MIR SINE MIR 70 233 -29 309 106 15 30 chr21 38724939 38725005 -6182565 + (TA)n Simple_repeat Simple_repeat 1 65 0 321 245 0 43 chr21 38725015 38725109 -6182461 - L1MC4 LINE L1 -1339 6703 6614 * 362 204 0 82 chr21 38725031 38725129 -6182441 + L1MC4 LINE L1 6614 6703 -1339 342 0 0 0 chr21 38725140 38725178 -6182392 + (TA)n Simple_repeat Simple_repeat 1 38 0 2210 114 0 25 chr21 38726129 38726444 -6181126 - AluSc SINE Alu -2 307 1 237 308 0 0 chr21 38727019 38727097 -6180473 - LTR33 LTR ERVL -122 399 322 460 267 75 6 chr21 38727158 38727319 -6180251 - LTR33 LTR ERVL -348 173 2 671 168 67 17 chr21 38727447 38727626 -6179944 + MER53 DNA DNA 1 188 -1 2331 86 3 7 chr21 38727948 38728251 -6179319 - AluSp SINE Alu -11 302 1 1437 208 70 58 chr21 38728360 38728715 -6178855 + Charlie4a DNA MER1_type 1 365 -1596 2035 223 38 40 chr21 38728715 38729221 -6178349 - MLT1D LTR MaLR 0 505 1 1437 208 70 58 chr21 38729221 38729366 -6178204 + Charlie4a DNA MER1_type 365 507 -1 298 317 76 21 chr21 38729436 38729581 -6177989 - MIR SINE MIR -57 205 53 305 194 0 14 chr21 38730503 38730575 -6176995 + GA-rich Low_complexity Low_complexity 3 73 0 270 231 65 28 chr21 38731110 38731218 -6176352 + L1ME4a LINE L1 6009 6120 -1 2143 121 0 10 chr21 38733355 38733668 -6173902 + AluSg SINE Alu 1 310 0 1907 128 28 17 chr21 38733867 38734157 -6173413 + AluJb SINE Alu 1 293 -19 214 205 0 0 chr21 38734904 38734943 -6172627 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1476 170 7 70 chr21 38734946 38735093 -6172477 - AluJo SINE Alu -31 281 161 450 0 0 0 chr21 38735093 38735143 -6172427 + (TA)n Simple_repeat Simple_repeat 2 51 0 1476 170 7 70 chr21 38735143 38735295 -6172275 - AluJo SINE Alu -151 161 1 2116 109 0 7 chr21 38736201 38736494 -6171076 + AluSc SINE Alu 1 291 -18 324 206 0 27 chr21 38736789 38736862 -6170708 - LTR44 LTR ERV1 0 519 449 2175 176 131 2 chr21 38736862 38737289 -6170281 - LTR44 LTR ERV1 -37 482 1 212 282 39 26 chr21 38737872 38737950 -6169620 + MIR3 SINE MIR 124 202 -6 2624 47 0 0 chr21 38738068 38738369 -6169201 + AluY SINE Alu 1 301 -10 2217 80 0 3 chr21 38739245 38739533 -6168037 - AluSp SINE Alu 0 313 27 2373 184 39 2 chr21 38739718 38740131 -6167439 - MSTB1 LTR MaLR 0 432 5 201 39 0 0 chr21 38740215 38740241 -6167329 + (CAA)n Simple_repeat Simple_repeat 2 27 0 626 272 8 60 chr21 38741652 38741917 -6165653 - L1MC4 LINE L1 -30 8012 7762 24 0 0 0 chr21 38742540 38742564 -6165006 + AT_rich Low_complexity Low_complexity 1 24 0 257 169 17 0 chr21 38743247 38743306 -6164264 + (TA)n Simple_repeat Simple_repeat 2 61 0 344 268 7 65 chr21 38743314 38743467 -6164103 - L1MC4 LINE L1 -1316 6726 6583 218 227 15 15 chr21 38743477 38743543 -6164027 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 272 263 17 6 chr21 38743554 38743729 -6163841 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 473 167 10 0 chr21 38743702 38743804 -6163766 + (CA)n Simple_repeat Simple_repeat 2 104 0 214 289 72 12 chr21 38743859 38743942 -6163628 + MIR3 SINE MIR 116 203 -5 673 19 106 0 chr21 38744717 38744877 -6162693 + (TA)n Simple_repeat Simple_repeat 2 178 0 242 136 0 0 chr21 38744887 38744931 -6162639 - L1MC4 LINE L1 -1340 6702 6659 303 322 0 0 chr21 38744932 38745022 -6162548 - L1MC4 LINE L1 -1339 6703 6614 239 152 43 0 chr21 38745028 38745074 -6162496 - LTR66 LTR ERVL -171 439 392 1872 198 15 3 chr21 38745140 38745478 -6162092 - MER7A DNA MER2_type -6 340 1 750 183 47 48 chr21 38745552 38745708 -6161862 + MLT2C1 LTR ERVL 1 156 -241 1866 168 79 6 chr21 38745708 38746048 -6161522 + MLT1A1 LTR MaLR 1 365 0 750 183 47 48 chr21 38746048 38746188 -6161382 + MLT2C1 LTR ERVL 156 349 -48 219 69 0 0 chr21 38746209 38746238 -6161332 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr21 38746796 38746819 -6160751 + AT_rich Low_complexity Low_complexity 1 23 0 2373 91 0 10 chr21 38746885 38747192 -6160378 + AluSg SINE Alu 1 304 -6 342 98 0 49 chr21 38747293 38747354 -6160216 + L1MA4A LINE L1 6245 6302 -1 929 155 0 31 chr21 38747450 38747611 -6159959 + MER20 DNA MER1_type 1 156 -63 1971 147 94 8 chr21 38747611 38747985 -6159585 - L1M1 LINE L1 -641 5659 5254 1886 164 77 3 chr21 38747990 38748356 -6159214 + L1MA6 LINE L1 5901 6293 -7 21 0 0 0 chr21 38748357 38748378 -6159192 + AT_rich Low_complexity Low_complexity 1 21 0 364 151 12 128 chr21 38748378 38748464 -6159106 + MER20 DNA MER1_type 144 219 0 4369 153 31 69 chr21 38749512 38750151 -6157419 + LTR1 LTR ERV1 1 604 -181 219 36 0 0 chr21 38750151 38750179 -6157391 + (CA)n Simple_repeat Simple_repeat 2 29 0 4369 153 31 69 chr21 38750179 38750355 -6157215 + LTR1 LTR ERV1 604 785 0 180 0 0 0 chr21 38750478 38750498 -6157072 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2344 102 0 3 chr21 38751087 38751390 -6156180 + AluSg SINE Alu 1 302 -8 529 214 0 0 chr21 38753055 38753158 -6154412 + L1MA9 LINE L1 6185 6287 -25 1431 279 88 18 chr21 38753570 38754083 -6153487 + MLT1H LTR MaLR 1 549 0 2228 91 27 3 chr21 38755257 38755554 -6152016 - AluY SINE Alu -7 304 1 756 42 0 0 chr21 38757238 38757334 -6150236 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 185 230 163 96 chr21 38758714 38758892 -6148678 - L2 LINE L2 -32 3281 3092 378 0 0 0 chr21 38759227 38759269 -6148301 + (TG)n Simple_repeat Simple_repeat 1 42 0 1248 110 3 0 chr21 38759770 38760136 -6147434 + (TCCA)n Simple_repeat Simple_repeat 1 367 0 585 286 42 34 chr21 38761387 38761625 -6145945 + MIR SINE MIR 17 256 -6 434 281 33 46 chr21 38761938 38762091 -6145479 - L2 LINE L2 0 3272 3122 596 159 9 19 chr21 38762575 38762682 -6144888 + MLT1C LTR MaLR 1 106 -361 2517 46 0 16 chr21 38762759 38763064 -6144506 - AluY SINE Alu -11 300 1 1799 192 135 0 chr21 38763860 38764245 -6143325 + MLT1C LTR MaLR 27 463 -4 2300 63 40 13 chr21 38765581 38765884 -6141686 + AluY SINE Alu 1 311 0 220 349 70 0 chr21 38766638 38766724 -6140846 + L2 LINE L2 3010 3101 -171 591 189 0 47 chr21 38767243 38767370 -6140200 - FLAM_A SINE Alu -4 138 18 1672 200 11 32 chr21 38768756 38769126 -6138444 + MLT1A1 LTR MaLR 1 362 -3 31 68 0 0 chr21 38770190 38770249 -6137321 + AT_rich Low_complexity Low_complexity 1 59 0 1789 204 71 30 chr21 38770675 38771111 -6136459 + MLT1C LTR MaLR 6 459 -8 1450 193 34 59 chr21 38771327 38771684 -6135886 + MLT1A1 LTR MaLR 15 362 -3 197 186 34 51 chr21 38771923 38771982 -6135588 + MIR SINE MIR 84 141 -67 188 359 78 6 chr21 38772228 38772395 -6135175 + MIR SINE MIR 13 191 -71 344 273 67 47 chr21 38772742 38772892 -6134678 + MIR SINE MIR 9 161 -101 29 47 0 0 chr21 38774861 38774904 -6132666 + AT_rich Low_complexity Low_complexity 1 43 0 1678 147 66 4 chr21 38775281 38775554 -6132016 + AluJb SINE Alu 1 290 -22 2166 117 0 0 chr21 38776601 38776892 -6130678 + AluSx SINE Alu 1 291 -21 1761 147 43 78 chr21 38777031 38777411 -6130159 - MER57A LTR ERV1 0 403 36 4936 149 34 54 chr21 38777411 38778333 -6129237 - MER4D LTR ERV1 0 903 1 1761 147 43 78 chr21 38778333 38778347 -6129223 - MER57A LTR ERV1 -367 36 23 2277 110 0 0 chr21 38778392 38778683 -6128887 + AluSg SINE Alu 1 291 -19 390 256 8 58 chr21 38780159 38780280 -6127290 - MIR3 SINE MIR 0 208 94 819 168 25 56 chr21 38780375 38780536 -6127034 - FAM SINE Alu -19 156 1 22 0 0 0 chr21 38781023 38781045 -6126525 + AT_rich Low_complexity Low_complexity 1 22 0 372 385 62 0 chr21 38781221 38781382 -6126188 + L2 LINE L2 3102 3272 0 249 305 116 0 chr21 38781488 38781583 -6125987 - MIR SINE MIR -109 153 48 1478 201 0 26 chr21 38781984 38782287 -6125283 - AluJo SINE Alu -7 305 11 2491 132 41 16 chr21 38782556 38782807 -6124763 - Tigger2 DNA MER2_type -1 2717 2449 2112 184 41 9 chr21 38782807 38783226 -6124344 - MSTB1 LTR MaLR 0 432 1 2491 132 41 16 chr21 38783226 38783414 -6124156 - Tigger2 DNA MER2_type -269 2449 2267 446 145 0 0 chr21 38783398 38783467 -6124103 - Tigger2 DNA MER2_type -2649 69 1 * 1409 194 77 70 chr21 38783482 38783702 -6123868 + MSTB1 LTR MaLR 1 227 -205 2054 103 65 0 chr21 38783702 38783993 -6123577 - AluY SINE Alu -1 310 1 1409 194 77 70 chr21 38783993 38784199 -6123371 + MSTB1 LTR MaLR 227 430 -2 2074 69 0 8 chr21 38784565 38784825 -6122745 + AluY SINE Alu 43 300 -11 2255 83 0 3 chr21 38785535 38785835 -6121735 + AluY SINE Alu 1 299 -12 2580 46 0 3 chr21 38786145 38786451 -6121119 - AluY SINE Alu -6 305 1 224 323 99 52 chr21 38786531 38786763 -6120807 + L3 LINE CR1 1322 1564 -13 2164 168 7 44 chr21 38786891 38787319 -6120251 - MER47B DNA MER2_type -6 412 1 1499 161 54 40 chr21 38788475 38788828 -6118742 + THE1C LTR MaLR 1 358 -17 289 109 0 2 chr21 38789318 38789372 -6118198 - L1PA16 LINE L1 0 6166 6119 307 312 18 0 chr21 38789528 38789637 -6117933 - MER81 DNA DNA -1 113 3 207 196 0 0 chr21 38789804 38789850 -6117720 + (TA)n Simple_repeat Simple_repeat 1 46 0 510 227 3 0 chr21 38789877 38790231 -6117339 + (TA)n Simple_repeat Simple_repeat 1 355 0 202 269 134 0 chr21 38793164 38793231 -6114339 - L2 LINE L2 0 3313 3238 491 189 19 9 chr21 38793503 38793609 -6113961 + ORSL DNA AcHobo 169 275 0 315 305 17 59 chr21 38794032 38794150 -6113420 + L2 LINE L2 3134 3246 -26 624 135 0 0 chr21 38794291 38794395 -6113175 - AluSg/x SINE Alu -7 303 200 21 0 0 0 chr21 38795052 38795073 -6112497 + AT_rich Low_complexity Low_complexity 1 21 0 1344 191 2 112 chr21 38795616 38796062 -6111508 + MLT2C1 LTR ERVL 1 397 0 34 0 0 0 chr21 38796212 38796246 -6111324 + AT_rich Low_complexity Low_complexity 1 34 0 611 293 82 50 chr21 38796701 38797647 -6109923 + L1ME2 LINE L1 1167 2374 -4748 564 236 0 12 chr21 38797647 38797812 -6109758 + L1MA4 LINE L1 6134 6296 -4 611 293 82 50 chr21 38797812 38798015 -6109555 + L1ME2 LINE L1 2374 2569 -4553 264 178 0 0 chr21 38798077 38798122 -6109448 + MER46A DNA MER2_type 2 46 -190 977 105 0 0 chr21 38798124 38798248 -6109322 - AluSq/x SINE Alu -188 124 1 836 154 66 33 chr21 38798248 38798430 -6109140 + MER46A DNA MER2_type 46 233 -3 411 38 0 0 chr21 38798431 38798484 -6109086 + (TG)n Simple_repeat Simple_repeat 2 54 0 3277 267 67 29 chr21 38798772 38799441 -6108129 + L1ME2 LINE L1 2912 3554 -3387 2206 66 0 4 chr21 38799441 38799715 -6107855 + AluY SINE Alu 28 300 -11 3277 267 67 29 chr21 38799715 38801012 -6106558 + L1ME2 LINE L1 3554 4952 -1989 1176 119 6 0 chr21 38801065 38801233 -6106337 - AluSg/x SINE Alu -10 302 134 3303 67 11 5 chr21 38801322 38801767 -6105803 + LTR7 LTR ERV1 1 448 -2 385 273 96 32 chr21 38801775 38801995 -6105575 + L1ME2 LINE L1 5552 5785 -1156 1763 239 132 31 chr21 38801998 38802927 -6104643 + L1ME2 LINE L1 5921 6949 -10 21 36 0 0 chr21 38803033 38803061 -6104509 + AT_rich Low_complexity Low_complexity 1 28 0 336 169 78 0 chr21 38803281 38803358 -6104212 + L1PA7 LINE L1 6069 6151 -3 24 32 0 0 chr21 38803424 38803455 -6104115 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 38803594 38803616 -6103954 + AT_rich Low_complexity Low_complexity 1 22 0 1841 71 11 19 chr21 38803640 38803906 -6103664 - HERVS71 LTR ERV1 -8714 264 1 4054 51 59 0 chr21 38803906 38804433 -6103137 - LTR6B LTR ERV1 0 558 1 2843 118 4 48 chr21 38804639 38805136 -6102434 + LTR12 LTR ERV1 4 714 0 26 0 0 0 chr21 38805588 38805614 -6101956 + AT_rich Low_complexity Low_complexity 1 26 0 485 262 64 39 chr21 38805648 38805930 -6101640 + L1MEd LINE L1 1051 1339 -4866 265 275 58 29 chr21 38806056 38806194 -6101376 + L1MEd LINE L1 1567 1708 -4688 1196 63 0 0 chr21 38806439 38806582 -6100988 - AluY SINE Alu -11 300 158 2140 99 0 23 chr21 38806608 38806911 -6100659 + AluSx SINE Alu 1 296 -16 340 302 73 36 chr21 38807196 38807388 -6100182 + L1MEd LINE L1 3036 3234 -2981 446 332 19 8 chr21 38807739 38807904 -6099666 - MIR SINE MIR -62 146 2 1228 168 18 0 chr21 38810051 38810271 -6097299 + L1MC1 LINE L1 6110 6333 0 187 277 0 31 chr21 38811083 38811148 -6096422 + MER5A DNA MER1_type 104 166 -23 2160 181 11 45 chr21 38811167 38811608 -6095962 + MSTB LTR MaLR 1 426 0 1019 24 0 16 chr21 38811682 38811808 -6095762 + AluYa5/8 SINE Alu 188 311 0 2082 178 16 53 chr21 38811984 38812212 -6095358 + MSTB1 LTR MaLR 1 205 -227 2168 142 0 0 chr21 38812212 38812515 -6095055 - AluSq SINE Alu -10 303 1 2082 178 16 53 chr21 38812515 38812735 -6094835 + MSTB1 LTR MaLR 205 432 0 453 232 216 0 chr21 38812867 38812992 -6094578 - MER5A DNA MER1_type 0 189 38 24 67 0 0 chr21 38813388 38813433 -6094137 + AT_rich Low_complexity Low_complexity 1 45 0 406 130 52 13 chr21 38814598 38814675 -6092895 - MADE1 DNA Mariner 0 80 1 2350 111 0 0 chr21 38815657 38815964 -6091606 + AluSg SINE Alu 4 310 0 597 278 35 10 chr21 38816759 38816957 -6090613 + MIR SINE MIR 48 250 -12 258 150 0 0 chr21 38817248 38817288 -6090282 - MLT1A1 LTR MaLR 0 365 326 1586 133 32 64 chr21 38817293 38817638 -6089932 + THE1C LTR MaLR 1 334 -41 354 137 39 12 chr21 38817641 38817727 -6089843 - MLT1A1 LTR MaLR -26 370 258 251 364 0 25 chr21 38818203 38818324 -6089246 - MIR SINE MIR -101 161 44 530 281 196 41 chr21 38818788 38819285 -6088285 + L2 LINE L2 2745 3313 0 23 0 0 0 chr21 38819528 38819551 -6088019 + AT_rich Low_complexity Low_complexity 1 23 0 1930 142 0 60 chr21 38819673 38820004 -6087566 - AluSx SINE Alu -1 311 1 471 340 47 22 chr21 38820718 38820950 -6086620 + MIR SINE MIR 11 248 -14 2028 141 0 0 chr21 38821471 38821755 -6085815 + AluJb SINE Alu 18 301 -11 235 161 36 0 chr21 38821762 38821818 -6085752 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr21 38823301 38823322 -6084248 + AT_rich Low_complexity Low_complexity 1 21 0 2101 129 0 16 chr21 38823859 38824170 -6083400 - AluSx SINE Alu -6 306 1 3303 218 84 25 chr21 38824170 38824856 -6082714 - L1MC2 LINE L1 -22 6740 5952 2387 92 0 3 chr21 38824856 38825161 -6082409 - AluSc SINE Alu -5 304 1 3303 218 84 25 chr21 38825161 38825557 -6082013 - L1MC2 LINE L1 -810 5952 5581 1675 91 0 17 chr21 38825559 38825800 -6081770 - L1PA8 LINE L1 0 6172 5936 4531 98 11 3 chr21 38825800 38826517 -6081053 + L1P LINE L1 2971 3693 -2453 * 7265 251 27 31 chr21 38826512 38826547 -6081023 - L1MC2 LINE L1 -973 5591 5557 1863 178 64 0 chr21 38826547 38826890 -6080680 - MLT1A1 LTR MaLR 0 365 1 7265 251 27 31 chr21 38826890 38828412 -6079158 - L1MC2 LINE L1 -1007 5557 4046 1735 180 3 3 chr21 38828412 38828707 -6078863 - AluJb SINE Alu -5 307 13 7265 251 27 31 chr21 38828707 38829820 -6077750 - L1MC2 LINE L1 -2518 4046 2930 3939 232 50 22 chr21 38829830 38830068 -6077502 - L1MC2 LINE L1 -4499 2137 1907 198 103 0 0 chr21 38830068 38830097 -6077473 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3939 232 50 22 chr21 38830097 38831780 -6075790 - L1MC2 LINE L1 -4729 1907 12 996 259 5 9 chr21 38831806 38832026 -6075544 - MER58A DNA MER1_type -5 219 1 2315 113 7 0 chr21 38832149 38832458 -6075112 - AluSx SINE Alu -1 311 1 512 222 46 26 chr21 38832690 38832843 -6074727 - Charlie8 DNA MER1_type -2215 202 47 186 291 0 0 chr21 38832941 38832996 -6074574 - MIR SINE MIR -143 119 65 2244 110 49 23 chr21 38833111 38833456 -6074114 + THE1B LTR MaLR 1 354 -10 180 0 0 0 chr21 38833756 38833776 -6073794 + (T)n Simple_repeat Simple_repeat 1 20 0 2332 104 35 41 chr21 38833858 38834224 -6073346 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr21 38834633 38834662 -6072908 + AT_rich Low_complexity Low_complexity 1 29 0 339 309 67 0 chr21 38834851 38835000 -6072570 + MER103 DNA DNA 2 160 -6 1779 168 0 0 chr21 38835324 38835610 -6071960 - AluJb SINE Alu -26 286 1 347 208 121 47 chr21 38837136 38837285 -6070285 + MER103 DNA DNA 6 165 -1 992 227 45 62 chr21 38837325 38837413 -6070157 - MER33 DNA MER1_type -2275 310 222 2177 110 0 3 chr21 38837413 38837712 -6069858 - AluSc SINE Alu -11 298 1 992 227 45 62 chr21 38837712 38837975 -6069595 - MER33 DNA MER1_type -2363 222 1 399 285 62 7 chr21 38838031 38838175 -6069395 - L2 LINE L2 -1 3312 3161 220 162 59 59 chr21 38838446 38838514 -6069056 - L2 LINE L2 -536 2778 2711 761 291 72 16 chr21 38838526 38838777 -6068793 + MLT1H1 LTR MaLR 7 271 -284 247 279 15 0 chr21 38838902 38838970 -6068600 + MLT1H1 LTR MaLR 424 492 -98 371 327 68 4 chr21 38840856 38841107 -6066463 + L1ME4a LINE L1 5548 5814 -307 267 274 29 10 chr21 38841256 38841358 -6066212 + (TA)n Simple_repeat Simple_repeat 1 104 0 2045 104 76 0 chr21 38841377 38841665 -6065905 + AluSx SINE Alu 1 310 -2 242 237 0 53 chr21 38841684 38841760 -6065810 + L1ME4a LINE L1 5984 6055 -66 21 36 0 0 chr21 38842184 38842212 -6065358 + AT_rich Low_complexity Low_complexity 1 28 0 264 246 18 53 chr21 38842425 38842539 -6065031 - LTR67 LTR ERVL 0 557 448 243 219 106 100 chr21 38842555 38842715 -6064855 + MER77 LTR ERV1 1 161 -444 756 276 81 40 chr21 38842790 38843087 -6064483 + MER68 LTR ERV1 235 543 -19 2688 23 0 0 chr21 38843091 38843392 -6064178 + AluYa5 SINE Alu 1 301 -10 2627 43 0 3 chr21 38843475 38843779 -6063791 - AluY SINE Alu -8 303 1 797 275 38 5 chr21 38843915 38844126 -6063444 - MER20 DNA MER1_type -1 218 1 26 93 0 0 chr21 38845602 38845677 -6061893 + AT_rich Low_complexity Low_complexity 1 75 0 321 238 79 32 chr21 38845727 38845853 -6061717 - L3 LINE CR1 -975 602 471 364 220 57 14 chr21 38846149 38846290 -6061280 + L1ME1 LINE L1 5324 5470 -696 313 193 0 24 chr21 38846290 38846373 -6061197 + GA-rich Low_complexity Low_complexity 4 84 0 793 115 0 58 chr21 38846375 38846566 -6061004 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 814 173 32 7 chr21 38846582 38846864 -6060706 + GA-rich Low_complexity Low_complexity 1 289 0 243 61 0 0 chr21 38846864 38846897 -6060673 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 1760 248 124 27 chr21 38846964 38847593 -6059977 + L1ME1 LINE L1 5477 6166 0 311 196 10 29 chr21 38848230 38848332 -6059238 + GA-rich Low_complexity Low_complexity 3 102 0 996 206 130 37 chr21 38848637 38848991 -6058579 + LTR37A LTR ERV1 1 387 -39 281 280 35 56 chr21 38851986 38852129 -6055441 + L2 LINE L2 1566 1705 -1609 618 293 82 69 chr21 38852543 38852994 -6054576 + L2 LINE L2 2448 2904 -410 236 330 97 19 chr21 38853071 38853174 -6054396 + L2 LINE L2 3192 3302 -11 286 303 42 42 chr21 38853421 38853540 -6054030 + L2 LINE L2 3153 3271 -1 392 232 72 159 chr21 38854594 38854801 -6052769 + MIR SINE MIR 12 200 -62 1000 244 5 0 chr21 38854803 38855000 -6052570 + MER58A DNA MER1_type 27 224 0 522 0 0 0 chr21 38855048 38855106 -6052464 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1459 168 12 8 chr21 38855106 38855362 -6052208 - AluJb SINE Alu -15 297 41 571 26 13 13 chr21 38855397 38855475 -6052095 + (TG)n Simple_repeat Simple_repeat 1 78 0 834 260 109 30 chr21 38855801 38856105 -6051465 + MLT1I LTR MaLR 82 409 0 397 103 0 0 chr21 38856675 38856733 -6050837 + L1MB4 LINE L1 6120 6177 -3 1642 118 0 0 chr21 38856733 38856954 -6050616 - AluSx SINE Alu -91 221 1 24 32 0 0 chr21 38856958 38856989 -6050581 + AT_rich Low_complexity Low_complexity 1 31 0 229 344 22 0 chr21 38858049 38858139 -6049431 - L3 LINE CR1 -4 1573 1482 293 197 26 40 chr21 38858852 38858928 -6048642 + MIR SINE MIR 187 261 -1 203 304 63 0 chr21 38860792 38860871 -6046699 + L2 LINE L2 2934 3017 -296 582 284 72 41 chr21 38861154 38861446 -6046124 + L2 LINE L2 3013 3313 0 219 188 0 0 chr21 38861910 38861958 -6045612 + (TG)n Simple_repeat Simple_repeat 2 49 0 249 108 0 0 chr21 38862722 38862759 -6044811 + (GA)n Simple_repeat Simple_repeat 2 38 0 1059 94 0 0 chr21 38863465 38863645 -6043925 + (TA)n Simple_repeat Simple_repeat 1 180 0 963 112 0 0 chr21 38863656 38863835 -6043735 + (TA)n Simple_repeat Simple_repeat 2 180 0 1059 102 0 0 chr21 38863846 38864023 -6043547 + (TA)n Simple_repeat Simple_repeat 2 178 0 2180 118 0 35 chr21 38864025 38864339 -6043231 - AluSx SINE Alu -9 303 1 303 93 0 0 chr21 38866023 38866066 -6041504 + (TG)n Simple_repeat Simple_repeat 2 44 0 190 106 43 0 chr21 38867176 38867223 -6040347 + (CA)n Simple_repeat Simple_repeat 1 49 0 2126 85 18 4 chr21 38868138 38868419 -6039151 + AluSg SINE Alu 17 301 -9 327 258 93 0 chr21 38868451 38868548 -6039022 - MIR SINE MIR -129 133 28 185 138 0 0 chr21 38868804 38868833 -6038737 + MER5B DNA MER1_type 26 54 -124 * 343 317 8 16 chr21 38868807 38868930 -6038640 - MER5A DNA MER1_type -28 161 40 1385 174 26 26 chr21 38868952 38869216 -6038354 - AluJb SINE Alu -26 286 23 1469 171 127 52 chr21 38869947 38870310 -6037260 + MLT1B LTR MaLR 1 390 0 200 277 8 84 chr21 38870341 38870460 -6037110 + MER5A DNA MER1_type 27 136 -53 239 220 60 0 chr21 38870509 38870559 -6037011 + L2 LINE L2 3217 3269 -3 874 202 19 34 chr21 38871003 38871211 -6036359 + MER51C LTR ERV1 429 633 -7 2003 109 21 11 chr21 38872501 38872784 -6034786 + AluSc SINE Alu 12 297 -12 327 25 0 0 chr21 38874606 38874646 -6032924 + (CA)n Simple_repeat Simple_repeat 2 41 0 2689 203 29 54 chr21 38874773 38875423 -6032147 + LTR27 LTR ERV1 3 636 0 1674 136 4 19 chr21 38876712 38876970 -6030600 + MLT2B2 LTR ERVL 1 254 -261 2160 105 3 3 chr21 38876989 38877283 -6030287 + AluSg SINE Alu 1 294 -16 253 312 102 57 chr21 38878125 38878282 -6029288 + MLT1L LTR MaLR 120 283 -332 1659 114 4 0 chr21 38878455 38878682 -6028888 + L1PA11 LINE L1 5939 6166 -8 3212 176 24 48 chr21 38878991 38879611 -6027959 + MER77 LTR ERV1 1 605 0 2319 113 0 0 chr21 38880170 38880480 -6027090 + AluSg SINE Alu 1 310 0 2194 213 60 16 chr21 38880792 38881276 -6026294 - MLT1D LTR MaLR 0 505 1 1307 235 0 97 chr21 38881570 38881802 -6025768 - MLT1A1 LTR MaLR 0 365 112 1809 159 0 34 chr21 38881802 38882097 -6025473 - AluJb SINE Alu -16 296 12 1307 235 0 97 chr21 38882097 38882129 -6025441 - MLT1A1 LTR MaLR -253 112 79 1894 155 7 0 chr21 38882129 38882426 -6025144 + AluJo SINE Alu 3 301 -11 1307 235 0 97 chr21 38882426 38882564 -6025006 - MLT1A1 LTR MaLR -286 79 1 644 86 37 25 chr21 38885709 38885871 -6021699 + (TCTA)n Simple_repeat Simple_repeat 3 166 0 567 164 35 0 chr21 38885911 38886082 -6021488 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 398 346 103 14 chr21 38886371 38886585 -6020985 - MIR SINE MIR -12 250 18 207 250 0 0 chr21 38886631 38886699 -6020871 + GA-rich Low_complexity Low_complexity 4 71 0 517 248 122 61 chr21 38886788 38887082 -6020488 + MER46C DNA MER2_type 5 316 -22 23 54 0 0 chr21 38887894 38887931 -6019639 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr21 38888479 38888502 -6019068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 886 225 168 22 chr21 38888952 38889268 -6018302 + MLT1A1 LTR MaLR 1 362 -3 429 201 24 12 chr21 38889379 38889543 -6018027 + (TG)n Simple_repeat Simple_repeat 1 166 0 241 188 25 0 chr21 38889613 38889693 -6017877 + (TG)n Simple_repeat Simple_repeat 2 83 0 436 210 153 0 chr21 38890152 38890276 -6017294 + MLT1K LTR MaLR 446 588 0 2176 132 62 6 chr21 38891145 38891501 -6016069 + MSTB LTR MaLR 1 376 -50 222 318 99 52 chr21 38891535 38891727 -6015843 - L2 LINE L2 -194 3119 2919 752 258 26 11 chr21 38892612 38892802 -6014768 - MIR SINE MIR -28 234 42 2737 111 16 5 chr21 38893887 38894258 -6013312 + THE1C LTR MaLR 1 375 0 500 296 74 6 chr21 38894708 38894870 -6012700 + MER5B DNA MER1_type 2 174 -4 516 221 166 14 chr21 38894896 38895041 -6012529 + MER5A DNA MER1_type 22 188 -1 340 330 8 17 chr21 38895351 38895469 -6012101 + L2 LINE L2 3148 3264 -8 300 262 175 10 chr21 38895755 38895858 -6011712 - L2 LINE L2 -4 3309 3190 2008 114 61 0 chr21 38895946 38896226 -6011344 - AluSx SINE Alu -15 297 1 431 119 12 60 chr21 38896508 38896592 -6010978 - L1MB2 LINE L1 -1 6170 6091 1782 198 24 40 chr21 38896592 38896686 -6010884 - L1MB3 LINE L1 -152 6031 5937 1788 68 0 9 chr21 38896686 38896906 -6010664 + AluSc SINE Alu 76 293 -16 1782 198 24 40 chr21 38896906 38897190 -6010380 - L1MB3 LINE L1 -246 5937 5659 1997 119 6 53 chr21 38897749 38898067 -6009503 + AluSg SINE Alu 1 303 -7 1534 211 29 48 chr21 38898231 38898610 -6008960 - MLT1A2 LTR MaLR 0 374 3 278 275 182 43 chr21 38899118 38899492 -6008078 + L2 LINE L2 2449 2874 -440 2514 164 47 0 chr21 38899912 38900321 -6007249 + MSTA LTR MaLR 1 428 0 180 0 0 0 chr21 38900332 38900352 -6007218 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 318 179 42 32 chr21 38900812 38900907 -6006663 - L1MC5 LINE L1 -44 7917 7822 2450 53 30 0 chr21 38900976 38901278 -6006292 - AluY SINE Alu 0 311 1 234 150 0 0 chr21 38901370 38901410 -6006160 + (CA)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr21 38902921 38902947 -6004623 + AT_rich Low_complexity Low_complexity 1 26 0 2152 155 11 25 chr21 38903960 38904327 -6003243 + MLT1A1 LTR MaLR 4 365 0 182 231 231 13 chr21 38904728 38904806 -6002764 + MIR SINE MIR 47 141 -121 205 233 0 0 chr21 38905612 38905655 -6001915 - L2 LINE L2 -4 3309 3267 434 253 0 0 chr21 38905784 38905883 -6001687 + MIR SINE MIR 87 185 -77 757 269 19 29 chr21 38906403 38906611 -6000959 - MIR SINE MIR -34 228 23 1512 214 46 85 chr21 38907977 38908458 -5999112 + MLT1C LTR MaLR 6 467 0 235 143 89 18 chr21 38908801 38908857 -5998713 + MLT1B LTR MaLR 1 60 -314 625 135 28 14 chr21 38908857 38908998 -5998572 + GA-rich Low_complexity Low_complexity 4 146 0 * 1122 122 0 0 chr21 38908995 38909038 -5998532 + (GGGAA)n Simple_repeat Simple_repeat 1 223 0 1122 122 0 0 chr21 38909038 38909218 -5998352 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 975 241 82 4 chr21 38909284 38909554 -5998016 + MLT1B LTR MaLR 100 390 0 241 328 24 16 chr21 38909564 38909689 -5997881 - L2 LINE L2 -1323 1991 1866 248 82 66 16 chr21 38909780 38909841 -5997729 + GA-rich Low_complexity Low_complexity 4 67 0 2147 105 13 3 chr21 38910300 38910605 -5996965 + AluY SINE Alu 1 308 -3 2549 206 54 20 chr21 38911583 38912121 -5995449 + MER68 LTR ERV1 5 560 -2 261 0 0 0 chr21 38912288 38912317 -5995253 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 252 120 11 54 chr21 38912455 38912547 -5995023 + (CA)n Simple_repeat Simple_repeat 2 89 0 532 120 35 42 chr21 38912563 38912832 -5994738 + (CA)n Simple_repeat Simple_repeat 1 267 0 202 164 60 15 chr21 38913461 38913528 -5994042 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2086 64 0 0 chr21 38917204 38917454 -5990116 + L1PA13 LINE L1 5910 6159 -4 691 225 121 22 chr21 38917479 38917661 -5989909 + MLT1I LTR MaLR 22 221 -188 1532 161 19 8 chr21 38919508 38919768 -5987802 + AluJb SINE Alu 1 263 -49 21 57 0 0 chr21 38920022 38920057 -5987513 + AT_rich Low_complexity Low_complexity 1 35 0 381 264 178 25 chr21 38920247 38920410 -5987160 + MIR SINE MIR 38 225 -37 211 287 117 11 chr21 38920532 38920626 -5986944 + MIR3 SINE MIR 104 207 -1 291 210 0 0 chr21 38921670 38921732 -5985838 - MER81 DNA DNA -26 88 27 204 222 93 0 chr21 38922029 38922083 -5985487 + L2 LINE L2 3255 3313 0 244 158 13 66 chr21 38922719 38922795 -5984775 - LTR16A1 LTR ERVL -101 356 285 2397 168 27 11 chr21 38923135 38923576 -5983994 - L1MA4 LINE L1 -6 7713 7266 3755 181 16 24 chr21 38923585 38924385 -5983185 - L1MA4 LINE L1 -896 6669 5876 359 219 7 89 chr21 38924354 38924500 -5983070 - L1MA4 LINE L1 -4135 3430 3297 * 2512 81 0 0 chr21 38924943 38925250 -5982320 + AluSx SINE Alu 1 307 -5 7009 177 14 12 chr21 38925332 38926553 -5981017 + Tigger1 DNA MER2_type 26 1248 -1170 4452 245 85 31 chr21 38926556 38927076 -5980494 - L1MEc LINE L1 -2000 4644 4154 2043 155 0 16 chr21 38927076 38927393 -5980177 - AluSx SINE Alu 0 312 1 4452 245 85 31 chr21 38927393 38928548 -5979022 - L1MEc LINE L1 -2490 4154 2878 1040 121 115 0 chr21 38928548 38928730 -5978840 + L1MC2 LINE L1 6017 6219 -125 2619 214 55 45 chr21 38928754 38929589 -5977981 - L1MEc LINE L1 -3926 2899 2057 1584 178 0 11 chr21 38929604 38929879 -5977691 + AluJo SINE Alu 16 287 -25 210 118 0 0 chr21 38929879 38929913 -5977657 + (CA)n Simple_repeat Simple_repeat 2 35 0 328 265 57 16 chr21 38929936 38930188 -5977382 - L1MEc LINE L1 -4741 1903 1586 2993 166 68 23 chr21 38930229 38930771 -5976799 - L1MC3 LINE L1 0 7785 7269 1687 196 59 46 chr21 38930771 38930788 -5976782 - MER31B LTR ERV1 0 466 451 1397 179 29 45 chr21 38930788 38931096 -5976474 + AluJo SINE Alu 1 303 -9 1687 196 59 46 chr21 38931096 38931537 -5976033 - MER31B LTR ERV1 -15 451 2 2993 166 68 23 chr21 38931537 38931629 -5975941 - L1MC3 LINE L1 -516 7269 5680 465 237 92 8 chr21 38931638 38931769 -5975801 - L1MEc LINE L1 -6163 662 521 2134 126 55 27 chr21 38931782 38932147 -5975423 - THE1C LTR MaLR 0 375 1 340 243 0 0 chr21 38932163 38932233 -5975337 - L1MEc LINE L1 -6293 532 463 2347 65 16 7 chr21 38932258 38932564 -5975006 + AluY SINE Alu 1 309 -2 300 324 106 11 chr21 38935406 38935585 -5971985 + L2 LINE L2 3118 3313 0 7102 47 16 0 chr21 38935698 38936570 -5971000 - L1PA7 LINE L1 -2 6152 5267 2026 18 0 0 chr21 38938632 38938855 -5968715 + AluYb8 SINE Alu 96 318 0 237 33 0 0 chr21 38939160 38939190 -5968380 + (GA)n Simple_repeat Simple_repeat 1 30 0 3373 253 50 26 chr21 38940300 38941169 -5966401 + MSTD-int LTR MaLR 841 1729 -6 1201 226 152 17 chr21 38941174 38941523 -5966047 + MSTD LTR MaLR 1 396 0 180 0 0 0 chr21 38942736 38942756 -5964814 + (TG)n Simple_repeat Simple_repeat 1 20 0 285 261 96 43 chr21 38943089 38943204 -5964366 - L2 LINE L2 0 3313 3193 232 353 12 0 chr21 38943506 38943591 -5963979 - L2 LINE L2 0 3272 3187 2096 205 82 8 chr21 38943685 38944187 -5963383 + L1MB8 LINE L1 5639 6177 -1 2164 115 78 32 chr21 38944690 38945038 -5962532 - THE1B LTR MaLR 0 364 1 2326 246 45 50 chr21 38945128 38945200 -5962370 + L1ME3A LINE L1 5255 5326 -844 1767 155 35 0 chr21 38945200 38945484 -5962086 + AluJo SINE Alu 2 295 -17 2326 246 45 50 chr21 38945484 38946248 -5961322 + L1ME3A LINE L1 5326 6087 -83 205 318 77 41 chr21 38946290 38946485 -5961085 - L2 LINE L2 -1201 2113 1912 4530 268 71 29 chr21 38947042 38949416 -5958154 + L1MEc LINE L1 173 2599 -3616 317 339 60 0 chr21 38949585 38949768 -5957802 + L2 LINE L2 2864 3057 -215 1661 261 133 20 chr21 38952188 38952897 -5954673 + HAL1 LINE L1 1579 2367 -140 2461 125 86 34 chr21 38953056 38953463 -5954107 + MSTC LTR MaLR 1 428 0 1118 283 81 31 chr21 38953832 38954672 -5952898 + L2 LINE L2 2423 3298 -15 2355 92 3 3 chr21 38954772 38955075 -5952495 - AluSq SINE Alu -10 303 1 281 341 15 15 chr21 38955446 38955581 -5951989 - MIR SINE MIR -3 259 125 197 359 60 26 chr21 38957492 38957609 -5949961 + L3 LINE CR1 544 664 -913 188 329 24 0 chr21 38957686 38957768 -5949802 - MIR SINE MIR -62 200 117 1586 189 31 0 chr21 38957789 38958075 -5949495 - MLT1B LTR MaLR 0 390 96 21 0 0 0 chr21 38958084 38958105 -5949465 + GC_rich Low_complexity Low_complexity 1 21 0 1965 121 11 4 chr21 38958108 38958380 -5949190 - AluSg SINE Alu -36 274 1 580 162 48 0 chr21 38958382 38958487 -5949083 - MLT1B LTR MaLR -280 110 1 333 216 0 0 chr21 38958629 38958703 -5948867 + L3 LINE CR1 1337 1410 -167 961 208 19 24 chr21 38959736 38959948 -5947622 + MER20 DNA MER1_type 9 219 0 191 309 114 24 chr21 38961510 38961633 -5945937 + L2 LINE L2 3179 3312 -1 267 289 22 22 chr21 38961785 38961875 -5945695 + L1ME LINE L1 5563 5652 -469 374 255 88 98 chr21 38961883 38962127 -5945443 - MIR SINE MIR -3 259 19 1779 248 54 59 chr21 38962132 38962744 -5944826 - MER21B LTR ERV1 -53 810 202 851 181 22 0 chr21 38962761 38962899 -5944671 - MLT1B LTR MaLR 0 390 250 784 193 52 57 chr21 38962908 38963100 -5944470 - MER21B LTR ERV1 -672 191 1 2083 108 10 10 chr21 38963713 38964001 -5943569 + AluSq SINE Alu 1 288 -25 373 282 29 77 chr21 38964758 38964928 -5942642 - MLT1J2 LTR MaLR -10 440 279 859 219 16 0 chr21 38964951 38965134 -5942436 - MER5A DNA MER1_type 0 189 4 2016 169 70 0 chr21 38965725 38966080 -5941490 - MLT1B LTR MaLR -9 381 2 288 0 0 0 chr21 38966310 38966342 -5941228 + (T)n Simple_repeat Simple_repeat 1 32 0 540 253 118 18 chr21 38967817 38967987 -5939583 + MER5A DNA MER1_type 2 188 -1 501 250 12 60 chr21 38968001 38968169 -5939401 + MER5B DNA MER1_type 5 164 -14 237 365 118 0 chr21 38968266 38968351 -5939219 - L2 LINE L2 -32 3240 3146 240 313 0 0 chr21 38968360 38968424 -5939146 + MER91B DNA MER1_type 2 65 -125 488 146 0 58 chr21 38968618 38968721 -5938849 - L1 LINE L1 -1772 4374 4278 1229 217 8 16 chr21 38968721 38968970 -5938600 + MLT1D LTR MaLR 259 505 0 341 312 0 0 chr21 38969122 38969215 -5938355 + (CAT)n Simple_repeat Simple_repeat 2 94 0 287 330 68 17 chr21 38969233 38969351 -5938219 - MIR SINE MIR -109 153 30 23 0 0 0 chr21 38969961 38969984 -5937586 + AT_rich Low_complexity Low_complexity 1 23 0 639 347 86 10 chr21 38970238 38970656 -5936914 + L1M2 LINE L1 1226 1675 -5821 14798 202 28 29 chr21 38971011 38976208 -5931362 + L1M2 LINE L1 2088 7191 -528 1516 271 188 32 chr21 38976255 38976283 -5931287 + L2 LINE L2 1758 1780 -1533 2065 133 40 0 chr21 38976283 38976583 -5930987 - AluSq SINE Alu -1 312 1 1516 271 188 32 chr21 38976583 38977822 -5929748 + L2 LINE L2 1780 3301 -12 437 224 40 8 chr21 38977822 38977947 -5929623 + L1ME3A LINE L1 5816 5944 -226 750 259 6 0 chr21 38978899 38979057 -5928513 + FRAM SINE Alu 4 162 -4 251 275 14 0 chr21 38979136 38979205 -5928365 + GA-rich Low_complexity Low_complexity 1 70 0 254 200 229 0 chr21 38979209 38979279 -5928291 + L2 LINE L2 3227 3312 -1 265 253 35 23 chr21 38980254 38980341 -5927229 + MIR SINE MIR 65 152 -56 918 268 54 10 chr21 38980695 38981008 -5926562 - LTR16C LTR ERVL -15 476 150 2077 129 0 20 chr21 38981530 38981833 -5925737 + AluSg SINE Alu 10 306 -4 436 224 137 50 chr21 38982143 38982304 -5925266 + MLT1H LTR MaLR 1 175 -374 575 267 62 44 chr21 38982334 38982372 -5925198 - MIR SINE MIR -10 252 216 2953 133 21 5 chr21 38982372 38982752 -5924818 + MSTA LTR MaLR 1 390 -38 2061 146 0 0 chr21 38982752 38983047 -5924523 - AluSx SINE Alu -17 295 1 2953 133 21 5 chr21 38983047 38983087 -5924483 + MSTA LTR MaLR 390 428 0 575 267 62 44 chr21 38983087 38983273 -5924297 - MIR SINE MIR -46 216 24 303 28 0 0 chr21 38983332 38983368 -5924202 + (TG)n Simple_repeat Simple_repeat 2 37 0 2465 80 3 6 chr21 38983369 38983680 -5923890 - AluY SINE Alu -1 310 1 464 211 137 50 chr21 38983736 38983897 -5923673 + MLT1C LTR MaLR 1 175 -374 288 196 18 0 chr21 38984094 38984150 -5923420 + MLT1H1 LTR MaLR 464 520 -35 1469 193 109 58 chr21 38984232 38984663 -5922907 + MLT1C LTR MaLR 12 464 -3 1317 52 0 0 chr21 38984736 38984889 -5922681 + AluY SINE Alu 146 298 -13 1848 119 0 79 chr21 38986314 38986671 -5920899 - AluSc SINE Alu 0 333 1 431 275 18 23 chr21 38987625 38987796 -5919774 - MLT1D LTR MaLR -159 346 177 * 910 169 30 53 chr21 38987795 38988034 -5919536 + MLT1C LTR MaLR 175 467 0 477 82 0 0 chr21 38988104 38988165 -5919405 + U3 snRNA snRNA 8 68 -149 17521 98 12 6 chr21 38988165 38991471 -5916099 + L1PA8 LINE L1 2838 6168 -4 2278 106 14 0 chr21 38993048 38993341 -5914229 - AluSx SINE Alu -15 297 1 1769 163 92 48 chr21 38995977 38996436 -5911134 + MER31A LTR ERV1 7 485 0 511 280 21 37 chr21 38996994 38997183 -5910387 - MIR SINE MIR -35 227 42 2156 141 0 0 chr21 38998518 38998824 -5908746 - AluSq SINE Alu -7 306 1 526 272 120 25 chr21 38999243 38999559 -5908011 + LTR16A1 LTR ERVL 104 449 -8 1195 181 68 77 chr21 38999573 38999971 -5907599 - MLT1C LTR MaLR -14 376 1 36 53 0 0 chr21 39001308 39001365 -5906205 + AT_rich Low_complexity Low_complexity 1 57 0 3532 190 67 91 chr21 39001397 39002723 -5904847 + Ricksha_b DNA DNA 1 1647 -13 240 367 75 22 chr21 39002906 39003184 -5904386 - L2 LINE L2 -338 2976 2684 1998 176 28 6 chr21 39003351 39003708 -5903862 - MLT1A1 LTR MaLR 0 365 1 269 291 63 44 chr21 39003773 39003979 -5903591 + HAL1 LINE L1 817 1026 -1481 328 300 150 12 chr21 39003982 39004142 -5903428 + L1MEd LINE L1 1059 1240 -4879 462 319 24 23 chr21 39004158 39004528 -5903042 + L1MEd LINE L1 1286 1586 -904 21 0 0 0 chr21 39004647 39004668 -5902902 + AT_rich Low_complexity Low_complexity 1 21 0 263 139 0 0 chr21 39004708 39004751 -5902819 - Alu SINE Alu -4 296 254 2393 103 3 0 chr21 39005098 39005410 -5902160 + AluSp SINE Alu 1 313 0 322 281 237 44 chr21 39005830 39006239 -5901331 - L2 LINE L2 -15 3298 2811 234 0 0 0 chr21 39006754 39006780 -5900790 + (TG)n Simple_repeat Simple_repeat 2 27 0 225 0 0 0 chr21 39006779 39006804 -5900766 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1857 183 78 0 chr21 39006868 39007229 -5900341 + MLT1B LTR MaLR 1 389 -1 2110 114 0 36 chr21 39007368 39007675 -5899895 - AluSx SINE Alu -16 296 1 1028 244 30 8 chr21 39007787 39008021 -5899549 - MER8 DNA MER2_type 0 239 1 2453 51 0 70 chr21 39008222 39008553 -5899017 + AluY SINE Alu 1 308 -3 1873 164 0 16 chr21 39008801 39009118 -5898452 + AluJb SINE Alu 1 312 0 264 200 0 0 chr21 39009783 39009838 -5897732 + (TG)n Simple_repeat Simple_repeat 2 56 0 27 62 0 0 chr21 39010337 39010385 -5897185 + AT_rich Low_complexity Low_complexity 1 48 0 222 211 0 0 chr21 39010402 39010459 -5897111 + (TA)n Simple_repeat Simple_repeat 2 58 0 2082 128 56 39 chr21 39010492 39010850 -5896720 + THE1B LTR MaLR 1 364 0 1477 242 25 11 chr21 39010917 39011277 -5896293 + MLT1A1 LTR MaLR 1 365 0 258 81 0 0 chr21 39012028 39012065 -5895505 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 199 257 69 40 chr21 39012086 39012187 -5895383 - L2 LINE L2 -33 3239 3136 2382 93 3 0 chr21 39012310 39012709 -5894861 + AluSp SINE Alu 1 400 0 382 220 206 0 chr21 39012775 39012916 -5894654 + MER5A DNA MER1_type 14 183 -6 358 260 57 24 chr21 39013234 39013357 -5894213 - MIR SINE MIR -108 154 28 193 213 0 0 chr21 39013938 39013985 -5893585 - L2 LINE L2 0 3313 3267 2574 53 0 0 chr21 39015909 39016210 -5891360 - AluY SINE Alu -10 301 1 1748 93 0 0 chr21 39016525 39016750 -5890820 - AluSg/x SINE Alu 0 310 86 1884 114 93 24 chr21 39017250 39017540 -5890030 + AluSx SINE Alu 1 310 -2 2468 47 7 3 chr21 39017728 39018024 -5889546 + AluY SINE Alu 1 297 -14 1558 172 83 40 chr21 39018276 39018484 -5889086 - MLT1B LTR MaLR 0 390 158 2100 105 61 3 chr21 39018484 39018779 -5888791 - AluSx SINE Alu 0 312 1 1558 172 83 40 chr21 39018779 39018942 -5888628 - MLT1B LTR MaLR -232 158 3 333 276 112 13 chr21 39019559 39019711 -5887859 + MER117 DNA MER1_type 5 171 -26 2088 135 3 0 chr21 39019840 39020144 -5887426 - AluSx SINE Alu -5 307 3 28 61 0 0 chr21 39020612 39020661 -5886909 + AT_rich Low_complexity Low_complexity 1 49 0 246 284 32 0 chr21 39022331 39022426 -5885144 - MIR SINE MIR -1 261 164 395 330 121 7 chr21 39022537 39022810 -5884760 + MLT1I LTR MaLR 63 366 -43 374 158 0 42 chr21 39022979 39023075 -5884495 + MER5A DNA MER1_type 1 91 -98 1658 246 29 69 chr21 39025781 39026253 -5881317 - MLT1D LTR MaLR -1 504 15 2043 171 99 8 chr21 39026253 39026645 -5880925 + MSTC LTR MaLR 1 428 0 5081 236 86 66 chr21 39026647 39027059 -5880511 + MSTC-int LTR MaLR 2 404 -1331 1812 117 0 0 chr21 39027059 39027299 -5880271 - AluSg/x SINE Alu 0 312 73 1694 137 15 4 chr21 39027300 39027563 -5880007 - AluSg SINE Alu -1 309 44 5081 236 86 66 chr21 39027563 39028848 -5878722 + MSTC-int LTR MaLR 403 1735 0 2237 169 49 5 chr21 39028850 39029258 -5878312 + MSTC LTR MaLR 3 428 0 1658 246 29 69 chr21 39029258 39029304 -5878266 - MLT1D LTR MaLR -492 13 1 218 363 135 16 chr21 39030145 39030338 -5877232 + L2 LINE L2 1146 1361 -1953 245 352 82 13 chr21 39030986 39031301 -5876269 + L2 LINE L2 2038 2374 -940 473 279 109 11 chr21 39031669 39031852 -5875718 + LTR33 LTR ERVL 13 213 -308 378 240 70 80 chr21 39031903 39032054 -5875516 + LTR33 LTR ERVL 309 459 -62 2375 87 10 3 chr21 39032054 39032363 -5875207 - AluY SINE Alu 0 311 1 378 240 70 80 chr21 39032363 39032411 -5875159 + LTR33 LTR ERVL 459 506 -15 3711 52 2 0 chr21 39033015 39033461 -5874109 + L1PA7 LINE L1 5692 6138 -16 318 26 0 0 chr21 39033461 39033500 -5874070 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 424 246 97 8 chr21 39034407 39034541 -5873029 + LTR16A LTR ERVL 139 284 -166 1784 163 3 10 chr21 39034830 39035131 -5872439 - AluJb SINE Alu -13 299 1 644 269 70 13 chr21 39035663 39035890 -5871680 + L1MB8 LINE L1 5936 6175 -3 274 294 159 8 chr21 39036836 39036962 -5870608 + MIR SINE MIR 9 153 -109 1647 197 0 14 chr21 39036974 39037269 -5870301 + AluJo SINE Alu 1 291 -21 325 324 194 13 chr21 39038931 39039462 -5868108 - L2 LINE L2 -939 2375 1749 1067 239 3 25 chr21 39039702 39039987 -5867583 - L1 LINE L1 -3038 3108 2830 2377 97 0 7 chr21 39039990 39040300 -5867270 - AluSg1 SINE Alu -1 308 1 339 213 199 7 chr21 39042146 39042282 -5865288 + MIR SINE MIR 85 246 -16 1864 114 11 4 chr21 39042689 39042952 -5864618 + AluSg SINE Alu 36 300 -10 2972 9 0 0 chr21 39044170 39044487 -5863083 + AluYb8 SINE Alu 1 317 -1 2562 68 0 0 chr21 39044620 39044931 -5862639 + AluY SINE Alu 1 311 0 323 350 17 22 chr21 39046092 39046272 -5861298 + MIR3 SINE MIR 30 208 0 4307 65 2 0 chr21 39046446 39046987 -5860583 + L1PA8 LINE L1 5622 6163 -9 387 208 0 0 chr21 39047382 39047507 -5860063 + (TA)n Simple_repeat Simple_repeat 2 126 0 327 85 0 0 chr21 39047728 39047775 -5859795 + (CA)n Simple_repeat Simple_repeat 1 47 0 980 124 9 7 chr21 39047906 39048075 -5859495 - L1PA13 LINE L1 -312 5862 5723 2431 70 0 13 chr21 39048075 39048389 -5859181 + L1PA13 LINE L1 5852 6163 0 2385 116 0 0 chr21 39048393 39048703 -5858867 + AluSx SINE Alu 1 310 -2 2017 126 0 0 chr21 39049224 39049501 -5858069 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr21 39049560 39049585 -5857985 + (TG)n Simple_repeat Simple_repeat 2 26 0 1657 156 16 42 chr21 39050760 39051068 -5856502 - AluJb SINE Alu -12 300 1 404 277 50 0 chr21 39051473 39051592 -5855978 - L2 LINE L2 0 3313 3189 462 36 0 0 chr21 39051615 39051671 -5855899 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2324 106 3 0 chr21 39051671 39051973 -5855597 - AluSx SINE Alu -9 303 1 1265 285 123 45 chr21 39052324 39053589 -5853981 - L2 LINE L2 -2 3311 1939 1243 166 5 9 chr21 39053638 39053855 -5853715 + AluJo SINE Alu 97 312 0 334 255 29 20 chr21 39053879 39053981 -5853589 - L2 LINE L2 -1397 1917 1815 218 247 233 0 chr21 39053998 39054071 -5853499 + MER5C DNA MER1_type 1 90 -234 283 169 138 0 chr21 39054214 39054279 -5853291 + MER5C DNA MER1_type 250 323 -1 190 201 47 148 chr21 39054279 39054433 -5853137 - L2 LINE L2 -1516 1798 1662 864 157 0 0 chr21 39054485 39054619 -5852951 + FLAM_C SINE Alu 9 142 -1 691 272 53 72 chr21 39054624 39054746 -5852824 - L2 LINE L2 -1715 1599 1476 1783 189 113 53 chr21 39054746 39055015 -5852555 + LTR53 LTR ERVL 3 255 -264 2184 96 7 7 chr21 39055015 39055297 -5852273 - AluSx SINE Alu -13 299 18 1783 189 113 53 chr21 39055297 39055515 -5852055 + LTR53 LTR ERVL 255 519 0 691 272 53 72 chr21 39055515 39055881 -5851689 - L2 LINE L2 -1838 1476 1120 2154 174 23 30 chr21 39056406 39056837 -5850733 - MSTA LTR MaLR 0 428 1 663 315 16 16 chr21 39056902 39057159 -5850411 + MIR SINE MIR 6 262 0 1049 196 9 14 chr21 39060186 39060400 -5847170 - MER20 DNA MER1_type -6 213 1 2063 52 16 0 chr21 39060515 39060763 -5846807 + AluY SINE Alu 30 281 -30 500 0 17 0 chr21 39060766 39060826 -5846744 + (TAA)n Simple_repeat Simple_repeat 2 62 0 31 0 0 0 chr21 39064470 39064501 -5843069 + AT_rich Low_complexity Low_complexity 1 31 0 476 156 31 4 chr21 39065388 39065496 -5842074 + L1MA7 LINE L1 5853 5959 -332 369 0 0 0 chr21 39069725 39069766 -5837804 + (TG)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr21 39070141 39070166 -5837404 + (T)n Simple_repeat Simple_repeat 1 25 0 528 98 29 0 chr21 39071885 39071987 -5835583 + CT-rich Low_complexity Low_complexity 2 106 0 28 29 0 0 chr21 39072806 39072841 -5834729 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr21 39073050 39073088 -5834482 + GC_rich Low_complexity Low_complexity 1 38 0 210 24 0 71 chr21 39073117 39073159 -5834411 + (CCG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr21 39073161 39073189 -5834381 + GC_rich Low_complexity Low_complexity 1 28 0 261 322 87 7 chr21 39074773 39074922 -5832648 + MIR SINE MIR 24 184 -78 1853 272 78 60 chr21 39074995 39075904 -5831666 - MER45C DNA AcHobo 0 953 29 274 283 150 9 chr21 39076034 39076147 -5831423 + L2 LINE L2 3143 3271 -1 1597 243 32 43 chr21 39076868 39077334 -5830236 - MLT1C LTR MaLR 0 467 7 204 238 12 71 chr21 39077500 39077584 -5829986 + MIR SINE MIR 117 195 -67 341 322 16 0 chr21 39077922 39078043 -5829527 + L1ME3 LINE L1 6011 6133 -29 352 194 23 6 chr21 39078199 39078374 -5829196 + (TG)n Simple_repeat Simple_repeat 2 179 0 237 296 10 7 chr21 39079023 39079146 -5828424 - MIR SINE MIR -72 136 45 339 25 0 0 chr21 39079393 39079433 -5828137 + (CA)n Simple_repeat Simple_repeat 1 40 0 411 304 163 23 chr21 39079635 39079941 -5827629 + L2 LINE L2 2964 3312 -1 266 274 0 53 chr21 39081040 39081153 -5826417 + MIR SINE MIR 156 262 0 2344 81 0 7 chr21 39081557 39081855 -5825715 - AluSc SINE Alu -13 296 1 351 287 92 40 chr21 39082013 39082412 -5825158 + L1MC4a LINE L1 5255 5662 -459 212 310 17 0 chr21 39082475 39082533 -5825037 + GA-rich Low_complexity Low_complexity 6 64 0 294 29 0 0 chr21 39082680 39082715 -5824855 + (TG)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr21 39082714 39082734 -5824836 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 188 33 0 33 chr21 39082827 39082857 -5824713 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 248 145 0 48 chr21 39083439 39083501 -5824069 - MLT2B1 LTR ERVL 0 520 462 267 31 0 0 chr21 39083530 39083562 -5824008 + (CA)n Simple_repeat Simple_repeat 2 33 0 2315 188 53 26 chr21 39083566 39084033 -5823537 - MLT2B1 LTR ERVL -40 480 1 364 274 35 9 chr21 39084750 39084863 -5822707 - L2 LINE L2 -4 3309 3194 361 296 69 11 chr21 39085075 39085264 -5822306 + L1MC4a LINE L1 5717 5916 -1892 964 150 39 53 chr21 39085536 39085743 -5821827 - MER3 DNA MER1_type -5 204 1 24 32 0 0 chr21 39086062 39086093 -5821477 + AT_rich Low_complexity Low_complexity 1 31 0 184 111 0 0 chr21 39086184 39086211 -5821359 + L3 LINE CR1 1536 1562 -15 604 277 39 24 chr21 39087525 39087731 -5819839 + MIR SINE MIR 51 259 -3 1806 216 77 16 chr21 39088638 39089078 -5818492 - MLT1C LTR MaLR 0 467 1 1158 280 102 40 chr21 39089365 39089667 -5817903 + HAL1 LINE L1 409 691 -1816 851 207 32 27 chr21 39089667 39089855 -5817715 - MER5A DNA MER1_type 0 189 1 1158 280 102 40 chr21 39089855 39090220 -5817350 + HAL1 LINE L1 691 1117 -1390 2683 260 96 37 chr21 39091701 39092778 -5814792 + HAL1 LINE L1 1143 2308 -199 2115 112 3 11 chr21 39092778 39093084 -5814486 - AluSx SINE Alu 0 305 2 2683 260 96 37 chr21 39093084 39093261 -5814309 + HAL1 LINE L1 2308 2473 -34 448 214 67 0 chr21 39093346 39093435 -5814135 + L1MB8 LINE L1 1 95 -6764 189 0 0 0 chr21 39093435 39093456 -5814114 + (TA)n Simple_repeat Simple_repeat 2 22 0 293 117 17 0 chr21 39093502 39093562 -5814008 + (TA)n Simple_repeat Simple_repeat 1 61 0 2179 286 27 14 chr21 39093562 39094118 -5813452 + L1MB8 LINE L1 109 671 -6188 * 3998 200 14 13 chr21 39094117 39094203 -5813367 - L1 LINE L1 -1312 4834 4750 2001 161 0 3 chr21 39094203 39094508 -5813062 - AluSx SINE Alu -8 304 1 3998 200 14 13 chr21 39094508 39095266 -5812304 - L1 LINE L1 -1396 4750 3989 5785 121 49 0 chr21 39095268 39096549 -5811021 + L1PA16 LINE L1 4833 6157 -9 2750 222 47 33 chr21 39096566 39097241 -5810329 + L1MB8 LINE L1 688 1372 -5487 360 167 0 0 chr21 39097244 39097316 -5810254 + GA-rich Low_complexity Low_complexity 1 72 0 10441 223 50 58 chr21 39097328 39099405 -5808165 + L1MB8 LINE L1 1400 3492 -3497 3665 140 4 22 chr21 39099405 39099942 -5807628 - MER1A DNA MER1_type 0 527 1 10441 223 50 58 chr21 39099942 39100774 -5806796 + L1MB8 LINE L1 3492 4329 -2660 4971 54 2 21 chr21 39100774 39101382 -5806188 + L1PA8 LINE L1 5575 6170 -2 10441 223 50 58 chr21 39101382 39103942 -5803628 + L1MB8 LINE L1 4329 6823 -166 1391 147 23 40 chr21 39103984 39104326 -5803244 - MSTA LTR MaLR 0 428 1 760 172 7 14 chr21 39104326 39104471 -5803099 + L1MB8 LINE L1 6840 6983 -6 289 208 14 14 chr21 39104759 39104831 -5802739 + LTR33 LTR ERVL 37 108 -413 1339 194 28 68 chr21 39105002 39105326 -5802244 + MLT1A1 LTR MaLR 55 365 0 31 0 0 0 chr21 39106256 39106287 -5801283 + AT_rich Low_complexity Low_complexity 1 31 0 1998 81 4 7 chr21 39106315 39106586 -5800984 + AluY SINE Alu 42 311 0 1764 183 0 20 chr21 39107238 39107544 -5800026 + AluJo SINE Alu 1 300 -12 277 353 7 33 chr21 39107902 39108052 -5799518 - MIR SINE MIR -80 182 37 185 343 93 19 chr21 39108086 39108194 -5799376 + L2 LINE L2 3156 3271 -1 3271 201 54 22 chr21 39108525 39109246 -5798324 - MER49 LTR ERV1 0 923 180 2370 90 0 3 chr21 39109735 39110046 -5797524 + AluY SINE Alu 1 310 -1 2225 123 0 0 chr21 39110132 39110434 -5797136 + AluSc SINE Alu 3 304 -5 2307 102 3 0 chr21 39110848 39111152 -5796418 + AluSp SINE Alu 1 305 -8 3056 172 59 19 chr21 39111724 39111786 -5795784 - L1MB8 LINE L1 -5 6173 6115 2075 115 0 7 chr21 39111786 39112115 -5795455 + AluSx SINE Alu 1 327 0 3056 172 59 19 chr21 39112115 39112674 -5794896 - L1MB8 LINE L1 -63 6115 5526 2622 144 49 5 chr21 39112812 39113222 -5794348 - MSTA LTR MaLR 0 428 1 1730 163 11 11 chr21 39113809 39114091 -5793479 + AluJo SINE Alu 1 282 -30 296 233 186 23 chr21 39115216 39115345 -5792225 + HAL1 LINE L1 1539 1688 -819 21 57 0 0 chr21 39115468 39115503 -5792067 + AT_rich Low_complexity Low_complexity 1 35 0 237 269 75 11 chr21 39115550 39115643 -5791927 - L3b LINE CR1 -271 1312 1214 1251 114 5 5 chr21 39116008 39116192 -5791378 - L1PA13 LINE L1 0 6163 5980 24 32 0 0 chr21 39116353 39116384 -5791186 + AT_rich Low_complexity Low_complexity 1 31 0 197 341 134 12 chr21 39116467 39116631 -5790939 - MIR3 SINE MIR -7 201 18 461 267 13 60 chr21 39116715 39116865 -5790705 + MIR SINE MIR 20 162 -100 180 0 0 0 chr21 39117133 39117153 -5790417 + (CAG)n Simple_repeat Simple_repeat 2 21 0 2199 92 0 3 chr21 39117306 39117616 -5789954 + AluSx SINE Alu 1 309 0 1961 134 0 0 chr21 39118471 39118755 -5788815 + L1PA13 LINE L1 5876 6159 -4 1107 210 59 0 chr21 39118755 39119045 -5788525 + Charlie5 DNA MER1_type 726 1032 -1580 186 189 0 0 chr21 39119599 39119636 -5787934 + (ATGGTG)n Simple_repeat Simple_repeat 6 42 0 245 208 99 59 chr21 39120437 39120538 -5787032 + MIR SINE MIR 79 183 -79 546 289 13 45 chr21 39121400 39121556 -5786014 + MIR SINE MIR 10 160 -102 371 299 0 9 chr21 39121881 39121988 -5785582 + MIR SINE MIR 156 261 -1 2530 128 5 25 chr21 39122106 39122473 -5785097 - THE1B LTR MaLR 0 364 5 2602 159 17 2 chr21 39122509 39122918 -5784652 + MSTA LTR MaLR 3 417 -11 8961 198 14 14 chr21 39122929 39124580 -5782990 + MSTA-int LTR MaLR 1 1651 0 2568 177 21 0 chr21 39124580 39124999 -5782571 + MSTA LTR MaLR 1 428 0 1254 208 22 110 chr21 39125683 39126083 -5781487 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr21 39126219 39126240 -5781330 + AT_rich Low_complexity Low_complexity 1 21 0 3393 158 22 5 chr21 39126684 39127236 -5780334 - MER34B LTR ERV1 -4 561 1 216 269 42 76 chr21 39127629 39127748 -5779822 - L2 LINE L2 -38 3275 3161 865 169 0 0 chr21 39129077 39129207 -5778363 + AluJ SINE Alu 4 133 -169 759 182 34 40 chr21 39129207 39129221 -5778349 + AluJ SINE Alu 134 147 -165 2264 142 44 19 chr21 39129221 39129587 -5777983 - THE1C LTR MaLR 0 375 1 759 182 34 40 chr21 39129587 39129720 -5777850 + AluJ SINE Alu 147 280 -32 216 0 0 0 chr21 39129734 39129758 -5777812 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 299 228 51 13 chr21 39130637 39130716 -5776854 + MIR SINE MIR 111 192 -70 197 294 15 0 chr21 39131365 39131433 -5776137 - MIR SINE MIR -84 178 110 366 239 186 18 chr21 39131907 39132074 -5775496 + MIR SINE MIR 17 211 -51 385 43 0 0 chr21 39132156 39132203 -5775367 - L1PA3 LINE L1 -253 5902 5856 201 74 0 0 chr21 39132238 39132265 -5775305 + (A)n Simple_repeat Simple_repeat 1 27 0 455 366 52 27 chr21 39132679 39133122 -5774448 + L3 LINE CR1 303 756 -821 764 151 92 0 chr21 39133132 39133284 -5774286 + L1MB3 LINE L1 6018 6183 0 21 36 0 0 chr21 39133657 39133685 -5773885 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 39133751 39133772 -5773798 + AT_rich Low_complexity Low_complexity 1 21 0 428 253 163 45 chr21 39134138 39134340 -5773230 + MIR SINE MIR 10 235 -27 319 272 40 16 chr21 39134632 39134757 -5772813 - LTR33 LTR ERVL -340 181 54 222 105 0 0 chr21 39136183 39136221 -5771349 + (TA)n Simple_repeat Simple_repeat 2 39 0 557 294 155 22 chr21 39137445 39137812 -5769758 + LTR16B LTR ERVL 37 452 -12 300 250 31 70 chr21 39139223 39139309 -5768261 + L1ME LINE L1 5735 5816 -305 2357 82 3 13 chr21 39139309 39139612 -5767958 - AluY SINE Alu -11 300 1 300 250 31 70 chr21 39139612 39139653 -5767917 + L1ME LINE L1 5816 5857 -264 369 0 0 0 chr21 39139733 39139774 -5767796 + (CA)n Simple_repeat Simple_repeat 2 42 0 844 171 35 12 chr21 39139877 39140047 -5767523 + MIR SINE MIR 10 183 -79 23 33 0 0 chr21 39140155 39140185 -5767385 + AT_rich Low_complexity Low_complexity 1 30 0 366 289 76 72 chr21 39140565 39140745 -5766825 - L2 LINE L2 0 3313 3135 2521 110 13 11 chr21 39140745 39141118 -5766452 - THE1C LTR MaLR -1 374 1 366 289 76 72 chr21 39141118 39141436 -5766134 - L2 LINE L2 -178 3135 2813 2021 223 40 40 chr21 39141538 39142063 -5765507 + MLT2B3 LTR ERVL 1 525 -29 11279 29 0 1 chr21 39142142 39144224 -5763346 + L1PA2 LINE L1 4074 6154 -1 311 296 0 0 chr21 39144224 39144312 -5763258 + ERVL-B3 LTR ERVL 26 113 -5651 20207 181 32 8 chr21 39144347 39147893 -5759677 + ERVL-B3 LTR ERVL 172 3802 -1962 1844 162 3 6 chr21 39147894 39148222 -5759348 + L1MA4 LINE L1 5968 6294 -6 22 35 0 0 chr21 39148327 39148356 -5759214 + AT_rich Low_complexity Low_complexity 1 29 0 760 160 42 168 chr21 39148408 39148484 -5759086 - Charlie1a DNA MER1_type -2532 229 145 1794 171 18 114 chr21 39148484 39148604 -5758966 + MLT2D LTR ERVL 2 132 -282 2083 104 0 4 chr21 39148604 39148874 -5758696 + AluSq SINE Alu 14 282 -31 216 0 0 0 chr21 39148874 39148898 -5758672 + (CA)n Simple_repeat Simple_repeat 1 24 0 1794 171 18 114 chr21 39148898 39149158 -5758412 + MLT2D LTR ERVL 131 334 -80 396 0 0 0 chr21 39149158 39149202 -5758368 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1794 171 18 114 chr21 39149202 39149276 -5758294 + MLT2D LTR ERVL 334 414 0 760 160 42 168 chr21 39149276 39149461 -5758109 - Charlie1a DNA MER1_type -2616 145 1 207 304 0 0 chr21 39152504 39152573 -5754997 + (TG)n Simple_repeat Simple_repeat 1 69 0 214 327 75 37 chr21 39153138 39153245 -5754325 - L2 LINE L2 0 3272 3162 243 289 21 41 chr21 39153621 39153718 -5753852 - L3 LINE CR1 -148 1429 1335 299 179 0 0 chr21 39154233 39154289 -5753281 - L1M4 LINE L1 -3127 3019 2964 2727 97 8 0 chr21 39154459 39154820 -5752750 - THE1B LTR MaLR 0 364 1 10376 101 41 37 chr21 39154820 39156392 -5751178 - THE1B-int LTR MaLR 0 1580 2 2388 106 65 0 chr21 39156393 39156734 -5750836 - THE1B LTR MaLR 0 364 2 281 306 9 37 chr21 39156966 39157074 -5750496 + MIR3 SINE MIR 89 193 -15 223 404 48 0 chr21 39157763 39157929 -5749641 - L2 LINE L2 -547 2767 2594 420 174 40 141 chr21 39158495 39158644 -5748926 + MLT1C LTR MaLR 4 137 -330 724 255 73 41 chr21 39158840 39159091 -5748479 + MLT1C LTR MaLR 138 402 -65 2210 74 0 7 chr21 39159091 39159410 -5748160 - AluY SINE Alu 0 311 27 724 255 73 41 chr21 39159410 39159472 -5748098 + MLT1C LTR MaLR 402 461 -6 376 221 146 50 chr21 39159848 39160047 -5747523 - LTR33A LTR ERVL -8 515 298 1624 225 97 13 chr21 39160409 39160872 -5746698 + MLT1D LTR MaLR 1 502 -3 330 87 0 0 chr21 39161375 39161421 -5746149 + (T)n Simple_repeat Simple_repeat 1 46 0 254 167 0 0 chr21 39162407 39162455 -5745115 + L2 LINE L2 3266 3313 0 626 111 0 0 chr21 39163056 39163146 -5744424 - AluSp/q SINE Alu -11 302 213 185 163 20 0 chr21 39163768 39163817 -5743753 + (TA)n Simple_repeat Simple_repeat 2 51 0 492 215 6 13 chr21 39163838 39163849 -5743721 + (TA)n Simple_repeat Simple_repeat 1 11 -146 2473 76 15 48 chr21 39163849 39164246 -5743324 - L1PA13 LINE L1 -4 6159 5776 492 215 6 13 chr21 39164246 39164392 -5743178 + (TA)n Simple_repeat Simple_repeat 11 157 0 271 178 0 0 chr21 39164396 39164441 -5743129 - L1PA13 LINE L1 -365 5796 5752 234 196 18 18 chr21 39164480 39164536 -5743034 + CT-rich Low_complexity Low_complexity 2 57 0 1192 258 93 16 chr21 39164582 39165013 -5742557 - MLT1C LTR MaLR -3 464 1 240 163 0 0 chr21 39165626 39165669 -5741901 + (TG)n Simple_repeat Simple_repeat 2 44 0 1772 142 55 20 chr21 39166459 39166796 -5740774 - THE1C LTR MaLR -2 373 5 786 294 17 51 chr21 39167143 39167436 -5740134 + MLT1E2-int LTR MaLR 961 1243 -128 1209 189 161 0 chr21 39167460 39167709 -5739861 - AluJo SINE Alu -13 289 1 268 213 0 13 chr21 39167733 39167808 -5739762 + MLT1E2-int LTR MaLR 1237 1310 -61 2205 207 91 60 chr21 39167851 39168453 -5739117 + MLT1E2 LTR MaLR 1 622 -4 248 299 68 34 chr21 39169054 39169171 -5738399 + L2 LINE L2 3184 3304 -9 3360 230 24 21 chr21 39169430 39170300 -5737270 + MER63C DNA MER1_type 57 929 -1 535 301 17 54 chr21 39170305 39170657 -5736913 - L2 LINE L2 -834 2480 2142 5881 113 14 30 chr21 39170746 39172404 -5735166 + L1PA12 LINE L1 4444 6092 -76 7642 30 5 0 chr21 39172404 39173476 -5734094 + L1PA4 LINE L1 5080 6155 0 512 161 0 0 chr21 39173476 39173561 -5734009 + L1PA12 LINE L1 6080 6166 -2 250 347 156 15 chr21 39173570 39173896 -5733674 - L2 LINE L2 -1262 2052 1681 1805 236 42 86 chr21 39173929 39174463 -5733107 + LTR9 LTR ERV1 1 504 -108 2173 137 0 3 chr21 39174463 39174776 -5732794 - AluSx SINE Alu 0 312 1 1805 236 42 86 chr21 39174776 39174881 -5732689 + LTR9 LTR ERV1 504 612 0 202 316 130 14 chr21 39174958 39175173 -5732397 - L2 LINE L2 -1745 1569 1330 298 297 80 19 chr21 39175267 39175479 -5732091 + L1MB8 LINE L1 3784 4008 -2138 226 291 18 0 chr21 39175521 39175576 -5731994 + L1MB8 LINE L1 5598 5653 -2155 296 216 92 59 chr21 39175587 39175740 -5731830 + MER104 DNA Tc2 19 176 -4 284 276 13 0 chr21 39176772 39176848 -5730722 + L2 LINE L2 3195 3271 -1 1212 164 18 36 chr21 39177582 39177723 -5729847 - L1MB8 LINE L1 -6 6172 6037 2013 159 13 47 chr21 39177723 39178107 -5729463 + MLT1A2 LTR MaLR 4 374 0 1212 164 18 36 chr21 39178107 39178240 -5729330 - L1MB8 LINE L1 -141 6037 5903 308 169 28 56 chr21 39178240 39178311 -5729259 + L1MB8 LINE L1 5861 5929 -249 * 882 220 91 8 chr21 39178303 39178544 -5729026 - L1MB8 LINE L1 -499 5679 5419 625 223 18 12 chr21 39178645 39178811 -5728759 - L1MA10 LINE L1 -7 6327 6161 2497 174 10 5 chr21 39178814 39179228 -5728342 + Tigger1 DNA MER2_type 2 417 -2001 3436 156 33 15 chr21 39179275 39179620 -5727950 + Tigger1 DNA MER2_type 1826 2187 -231 1773 137 108 15 chr21 39179620 39179963 -5727607 - THE1C LTR MaLR 0 375 1 3436 156 33 15 chr21 39179963 39180200 -5727370 + Tigger1 DNA MER2_type 2187 2418 0 303 245 184 0 chr21 39180473 39180571 -5726999 + MIR SINE MIR 146 261 -1 334 284 110 44 chr21 39180785 39181102 -5726468 - L1MC4a LINE L1 -1879 5929 5592 3411 64 0 4 chr21 39181125 39181575 -5725995 + LTR7 LTR ERV1 1 448 -2 20012 96 58 53 chr21 39181577 39184851 -5722719 + HERVH LTR ERV1 1 3290 -4423 3503 107 0 4 chr21 39184850 39185346 -5722224 + HERVH LTR ERV1 3500 3993 -3720 * 4345 150 3 1 chr21 39185348 39186009 -5721561 + HERVH LTR ERV1 4488 5149 -2564 1381 125 23 5 chr21 39186010 39186226 -5721344 + HERVH LTR ERV1 5600 5819 -1894 * 2509 84 48 13 chr21 39186224 39186603 -5720967 + HERVH LTR ERV1 7322 7713 0 3665 60 0 4 chr21 39186603 39187053 -5720517 + LTR7 LTR ERV1 1 448 -2 29 28 0 0 chr21 39187136 39187172 -5720398 + AT_rich Low_complexity Low_complexity 1 36 0 2488 223 23 46 chr21 39187212 39187531 -5720039 + MER73 LTR ERVL 1 299 -345 6103 32 0 1 chr21 39187531 39188217 -5719353 - L1PA4 LINE L1 0 6155 5471 2488 223 23 46 chr21 39188217 39188543 -5719027 + MER73 LTR ERVL 299 631 -13 495 302 41 6 chr21 39188558 39188730 -5718840 - L1MC4a LINE L1 -2270 5538 5361 252 0 0 0 chr21 39188774 39188802 -5718768 + (TA)n Simple_repeat Simple_repeat 2 29 0 1866 180 17 11 chr21 39189318 39189668 -5717902 + L1PA16 LINE L1 5814 6165 -1 1642 85 9 0 chr21 39189713 39189924 -5717646 + L1PB1 LINE L1 5936 6148 -3 493 312 130 36 chr21 39189974 39190480 -5717090 - L1MC4a LINE L1 -1542 4604 4051 21 0 0 0 chr21 39190525 39190546 -5717024 + AT_rich Low_complexity Low_complexity 1 21 0 205 191 24 0 chr21 39190558 39190600 -5716970 + (CATA)n Simple_repeat Simple_repeat 4 46 0 332 291 56 31 chr21 39190638 39190834 -5716736 - L1MC5 LINE L1 -241 7720 7520 232 266 115 36 chr21 39190878 39191070 -5716500 - L1MC4a LINE L1 -2191 3955 3749 936 191 48 48 chr21 39191314 39191440 -5716130 - MER6B DNA MER2_type -655 210 82 4769 75 7 2 chr21 39191440 39192027 -5715543 - L1PA8 LINE L1 0 6172 5583 936 191 48 48 chr21 39192027 39192110 -5715460 - MER6B DNA MER2_type -782 83 1 450 284 86 53 chr21 39192764 39193007 -5714563 - MIR SINE MIR -6 256 6 21 0 0 0 chr21 39193280 39193301 -5714269 + AT_rich Low_complexity Low_complexity 1 21 0 678 198 18 17 chr21 39196059 39196416 -5711154 + GA-rich Low_complexity Low_complexity 1 357 0 291 313 152 0 chr21 39196751 39196863 -5710707 + L2 LINE L2 3183 3311 -2 2574 140 22 50 chr21 39196981 39197425 -5710145 + MSTB1 LTR MaLR 1 432 0 1033 212 40 130 chr21 39199134 39199497 -5708073 - LTR68 LTR ERV1 -286 454 147 6127 46 0 0 chr21 39199497 39200197 -5707373 + L1PA4 LINE L1 5455 6154 -1 1033 212 40 130 chr21 39200197 39200332 -5707238 - LTR68 LTR ERV1 -593 147 1 935 147 16 147 chr21 39200522 39200774 -5706796 - MER20 DNA MER1_type 0 219 1 200 286 61 41 chr21 39201551 39201649 -5705921 + L2 LINE L2 3141 3240 -32 2425 211 61 36 chr21 39201894 39202471 -5705099 - MLT1E LTR MaLR 0 593 3 23 0 0 0 chr21 39202477 39202500 -5705070 + AT_rich Low_complexity Low_complexity 1 23 0 191 279 115 0 chr21 39203638 39203699 -5703871 - MIR3 SINE MIR -12 196 129 629 279 56 52 chr21 39204234 39204467 -5703103 - MIR SINE MIR -8 254 21 1923 164 7 0 chr21 39204614 39204912 -5702658 + AluSx SINE Alu 1 300 -12 210 37 0 0 chr21 39205268 39205295 -5702275 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 357 158 0 0 chr21 39206006 39206063 -5701507 + MSTD LTR MaLR 1 57 -339 821 208 44 6 chr21 39206102 39206285 -5701285 + MSTD LTR MaLR 207 396 0 23 0 0 0 chr21 39207161 39207184 -5700386 + AT_rich Low_complexity Low_complexity 1 23 0 1375 281 73 25 chr21 39207250 39207822 -5699748 + L1MCb LINE L1 1 600 -5445 2546 216 29 23 chr21 39207867 39208674 -5698896 + L1MCb LINE L1 555 1365 -4857 3999 207 21 38 chr21 39208715 39209542 -5698028 - MER21B LTR ERV1 -50 813 1 2045 276 42 42 chr21 39209542 39211136 -5696434 + L1MCb LINE L1 1563 3113 -3451 488 263 21 16 chr21 39211153 39211343 -5696227 + L1MCb LINE L1 3349 3539 -3025 3455 202 66 3 chr21 39211393 39212259 -5695311 + L1MC3 LINE L1 5895 6894 -1101 863 147 58 26 chr21 39212259 39212415 -5695155 + FRAM SINE Alu 1 160 -16 715 151 0 9 chr21 39212418 39212524 -5695046 + AluSq/x SINE Alu 25 129 -183 1140 171 252 115 chr21 39212548 39212758 -5694812 + L1MC3 LINE L1 6879 7059 -726 245 293 0 0 chr21 39212758 39212816 -5694754 + MLT1F1 LTR MaLR 33 90 -477 1140 171 252 115 chr21 39212816 39213052 -5694518 + L1MC3 LINE L1 7059 7432 -353 2704 273 84 36 chr21 39213066 39213618 -5693952 + L1MEc LINE L1 994 1518 -4697 2176 93 0 0 chr21 39213618 39213896 -5693674 + AluSc SINE Alu 28 305 -4 2704 273 84 36 chr21 39213896 39215129 -5692441 + L1MEc LINE L1 1518 2916 -3299 2259 95 3 10 chr21 39215129 39215424 -5692146 + AluSx SINE Alu 3 295 -17 2704 273 84 36 chr21 39215424 39216319 -5691251 + L1MEc LINE L1 2916 3766 -2449 996 159 14 56 chr21 39216317 39216531 -5691039 - L1M3e LINE L1 -5055 1975 1771 * 2052 235 132 37 chr21 39216531 39217421 -5690149 - L1M3e LINE L1 -6051 979 6 596 232 127 29 chr21 39217432 39217747 -5689823 + L1MEc LINE L1 4401 4746 -1469 552 256 40 27 chr21 39217753 39218157 -5689413 + L1MEc LINE L1 5128 5536 -695 21 57 0 0 chr21 39218280 39218315 -5689255 + AT_rich Low_complexity Low_complexity 1 35 0 690 105 51 12 chr21 39219056 39219390 -5688180 + (CA)n Simple_repeat Simple_repeat 1 347 0 522 129 59 12 chr21 39219419 39219834 -5687736 + (CA)n Simple_repeat Simple_repeat 1 434 0 543 115 52 17 chr21 39219905 39220079 -5687491 + (CA)n Simple_repeat Simple_repeat 1 180 0 528 104 54 24 chr21 39220109 39220455 -5687115 + (CA)n Simple_repeat Simple_repeat 1 356 0 516 149 23 29 chr21 39220506 39220681 -5686889 + (CA)n Simple_repeat Simple_repeat 1 174 0 2678 122 46 18 chr21 39222480 39222914 -5684656 - Tigger2 DNA MER2_type 0 2718 2273 2072 114 3 3 chr21 39222924 39223243 -5684327 + AluSc SINE Alu 3 321 0 783 198 12 38 chr21 39223468 39223669 -5683901 - L1MCc LINE L1 -745 6196 6003 2190 128 0 3 chr21 39223669 39223982 -5683588 - AluSq SINE Alu -1 312 1 783 198 12 38 chr21 39223982 39224013 -5683557 - L1MCc LINE L1 -938 6003 5973 * 1343 229 47 80 chr21 39224010 39224237 -5683333 - L1MCc LINE L1 -1565 5376 5143 2035 205 58 18 chr21 39224237 39224685 -5682885 - MLT1C LTR MaLR 0 467 2 1343 229 47 80 chr21 39224685 39225091 -5682479 - L1MCc LINE L1 -1798 5143 4764 * 3697 221 75 32 chr21 39225079 39226494 -5681076 - L1MCc LINE L1 -2694 4247 2895 2093 97 0 11 chr21 39226494 39226820 -5680750 - AluSc SINE Alu 0 328 6 3697 221 75 32 chr21 39226820 39227875 -5679695 - L1MCc LINE L1 -4046 2895 1887 1928 139 3 36 chr21 39227875 39228206 -5679364 - AluSx SINE Alu 0 312 1 3697 221 75 32 chr21 39228206 39229338 -5678232 - L1MCc LINE L1 -5054 1887 19 1374 138 150 8 chr21 39230038 39230285 -5677285 - AluJb SINE Alu -30 282 1 1646 197 73 35 chr21 39230447 39230874 -5676696 + LTR47B LTR ERVL 1 443 0 284 277 48 24 chr21 39231094 39231177 -5676393 - L2 LINE L2 -46 3267 3183 1231 210 87 13 chr21 39231418 39231728 -5675842 - MER58B DNA MER1_type -8 333 1 228 214 11 22 chr21 39232575 39232664 -5674906 + (TG)n Simple_repeat Simple_repeat 2 89 0 331 330 39 72 chr21 39232706 39233008 -5674562 - L2 LINE L2 -281 2991 2696 22 0 0 0 chr21 39233982 39234004 -5673566 + AT_rich Low_complexity Low_complexity 1 22 0 1947 179 55 0 chr21 39234093 39234457 -5673113 - MLT1B LTR MaLR -6 384 1 326 300 147 5 chr21 39235190 39235380 -5672190 - MIR SINE MIR -41 221 5 274 326 14 35 chr21 39235449 39235593 -5671977 + MIR SINE MIR 95 235 -27 23 33 0 0 chr21 39236408 39236438 -5671132 + AT_rich Low_complexity Low_complexity 1 30 0 269 321 0 0 chr21 39236807 39236888 -5670682 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 251 229 71 0 chr21 39237236 39237306 -5670264 - Charlie8 DNA MER1_type -2247 170 96 361 289 48 45 chr21 39237962 39238273 -5669297 - L1M4 LINE L1 -1099 5047 4736 518 223 0 4 chr21 39238742 39239022 -5668548 + (CA)n Simple_repeat Simple_repeat 1 278 0 180 200 0 0 chr21 39239035 39239095 -5668475 + (CA)n Simple_repeat Simple_repeat 2 61 0 452 192 6 16 chr21 39239126 39239308 -5668262 + (CA)n Simple_repeat Simple_repeat 1 180 0 322 227 16 0 chr21 39239368 39239633 -5667937 + (CA)n Simple_repeat Simple_repeat 1 269 0 485 245 40 27 chr21 39240015 39240212 -5667358 - MER58 DNA MER1_type -17 2403 1 264 192 39 123 chr21 39240927 39241057 -5666513 + L1MC4a LINE L1 6414 6532 -1276 389 219 0 12 chr21 39241134 39241216 -5666354 + Tigger1 DNA MER2_type 3 83 -2335 1556 179 3 35 chr21 39241306 39241596 -5665974 + AluJo SINE Alu 1 281 -31 198 0 0 0 chr21 39241599 39241621 -5665949 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 775 217 7 7 chr21 39241872 39242024 -5665546 - AluJo SINE Alu -111 201 50 1875 156 7 0 chr21 39242341 39242617 -5664953 + AluSx SINE Alu 3 280 -32 189 0 0 0 chr21 39242617 39242638 -5664932 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 182 263 0 144 chr21 39243675 39243793 -5663777 - L3 LINE CR1 -16 1561 1461 370 303 25 8 chr21 39243975 39244097 -5663473 + L3 LINE CR1 1376 1499 -78 229 208 0 0 chr21 39244183 39244231 -5663339 - L2 LINE L2 -8 3305 3258 199 359 86 31 chr21 39244229 39244357 -5663213 + L2 LINE L2 3138 3272 0 * 218 267 47 0 chr21 39244403 39244489 -5663081 + MIR SINE MIR 96 185 -77 3210 265 59 63 chr21 39244489 39245855 -5661715 + L1ME2 LINE L1 12 1369 -5027 1521 189 25 4 chr21 39245855 39246135 -5661435 + AluJo SINE Alu 1 286 -26 3210 265 59 63 chr21 39246135 39246873 -5660697 + L1ME2 LINE L1 1369 2108 -4288 1631 215 25 3 chr21 39246875 39247229 -5660341 + L1ME2 LINE L1 5527 5888 -347 934 106 17 22 chr21 39247236 39247342 -5660228 + (GAAA)n Simple_repeat Simple_repeat 1 283 0 934 106 17 22 chr21 39247342 39247521 -5660049 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 419 281 41 0 chr21 39247549 39247695 -5659875 + L1ME2 LINE L1 5884 6035 -198 936 185 0 38 chr21 39247938 39248122 -5659448 - FRAM SINE Alu 0 176 1 2034 166 58 85 chr21 39249006 39249454 -5658116 + MLT1D LTR MaLR 1 460 -45 378 61 0 0 chr21 39249454 39249503 -5658067 + (TA)n Simple_repeat Simple_repeat 1 49 0 369 0 0 0 chr21 39249502 39249543 -5658027 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 2034 166 58 85 chr21 39249503 39249544 -5658026 + MLT1D LTR MaLR 460 438 -67 2121 116 0 0 chr21 39249544 39249821 -5657749 - AluSx SINE Alu -35 277 1 2034 166 58 85 chr21 39249821 39249889 -5657681 + MLT1D LTR MaLR 437 505 0 333 143 19 9 chr21 39251967 39252072 -5655498 + (TA)n Simple_repeat Simple_repeat 1 106 0 226 189 34 108 chr21 39252148 39252296 -5655274 - L1MCa LINE L1 -4296 2130 1994 252 138 46 0 chr21 39252297 39252362 -5655208 + (TA)n Simple_repeat Simple_repeat 1 68 0 1750 236 128 19 chr21 39252375 39252858 -5654712 - MLT1H LTR MaLR 0 549 14 2200 159 5 13 chr21 39253162 39253540 -5654030 - THE1C LTR MaLR 0 375 1 356 306 104 60 chr21 39253660 39253977 -5653593 - HAL1 LINE L1 -2 2505 2175 292 307 90 5 chr21 39254019 39254208 -5653362 - HAL1b LINE L1 -437 911 707 188 0 74 0 chr21 39254275 39254302 -5653268 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 4190 79 20 0 chr21 39254471 39255014 -5652556 - MER41A LTR ERV1 0 554 1 1710 297 66 32 chr21 39255017 39255974 -5651596 - HAL1 LINE L1 -745 1762 774 5495 145 14 0 chr21 39256208 39257173 -5650397 - L1PA15 LINE L1 0 6165 5185 2902 6 0 3 chr21 39257336 39257648 -5649922 + AluYa5 SINE Alu 1 311 0 290 309 144 25 chr21 39258639 39258875 -5648695 + MLT1J2 LTR MaLR 67 330 -120 719 246 105 37 chr21 39258939 39259632 -5647938 + L1ME3A LINE L1 5296 6091 -79 383 191 0 0 chr21 39259786 39259854 -5647716 + L2 LINE L2 3232 3299 -14 898 103 14 0 chr21 39259866 39260011 -5647559 + (GGAA)n Simple_repeat Simple_repeat 2 148 0 234 239 30 15 chr21 39260021 39260088 -5647482 + MLT1I LTR MaLR 340 407 -2 14499 145 13 17 chr21 39260147 39261184 -5646386 - Tigger1 DNA MER2_type 0 2418 1378 2245 121 3 3 chr21 39261184 39261491 -5646079 + AluSc SINE Alu 1 307 -2 14499 145 13 17 chr21 39261491 39262423 -5645147 - Tigger1 DNA MER2_type -1040 1378 458 2308 93 0 34 chr21 39262423 39262745 -5644825 + AluY SINE Alu 1 311 0 14499 145 13 17 chr21 39262745 39263202 -5644368 - Tigger1 DNA MER2_type -1960 458 1 309 151 0 0 chr21 39264052 39264105 -5643465 + T-rich Low_complexity Low_complexity 1 53 0 209 274 186 16 chr21 39264453 39264577 -5642993 - MIR SINE MIR -4 258 114 6834 206 3 7 chr21 39265582 39266828 -5640742 + L1 LINE L1 334 1574 -5991 4601 92 20 21 chr21 39266827 39267012 -5640558 + L1 LINE L1 2506 2690 -4875 * 2490 76 0 0 chr21 39267012 39267313 -5640257 + AluY SINE Alu 1 301 -10 4601 92 20 21 chr21 39267313 39267830 -5639740 + L1 LINE L1 2690 3207 -4358 922 101 8 0 chr21 39267833 39267952 -5639618 + AluY SINE Alu 1 120 -191 4998 155 17 2 chr21 39267954 39268121 -5639449 + L1 LINE L1 4930 5093 -2472 1178 41 29 6 chr21 39268121 39268293 -5639277 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 4998 155 17 2 chr21 39268293 39268970 -5638600 + L1 LINE L1 5093 5786 -1779 558 113 15 165 chr21 39268977 39269110 -5638460 + AluJb SINE Alu 181 293 -19 285 202 10 20 chr21 39269123 39269222 -5638348 + CT-rich Low_complexity Low_complexity 3 100 0 393 178 11 11 chr21 39269242 39269332 -5638238 - MIR SINE MIR -4 258 169 2360 126 85 10 chr21 39269674 39270072 -5637498 - MSTA LTR MaLR 0 428 1 566 240 34 29 chr21 39273287 39273462 -5634108 + MER5A DNA MER1_type 1 176 -13 331 281 18 26 chr21 39273694 39273808 -5633762 - MIR SINE MIR -30 232 120 291 54 0 0 chr21 39273968 39274005 -5633565 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 4626 155 5 14 chr21 39275929 39276711 -5630859 - L1PB3 LINE L1 -5 6149 5375 943 173 6 12 chr21 39276752 39276914 -5630656 + FRAM SINE Alu 1 161 -15 408 308 28 73 chr21 39278067 39278135 -5629435 - L3 LINE CR1 -547 1030 960 993 45 8 15 chr21 39278135 39278268 -5629302 - L1PA4 LINE L1 0 6155 6024 408 308 28 73 chr21 39278268 39278485 -5629085 - L3 LINE CR1 -617 960 758 328 266 125 0 chr21 39278499 39278683 -5628887 + L1ME4a LINE L1 5915 6121 0 23 0 0 0 chr21 39281475 39281498 -5626072 + AT_rich Low_complexity Low_complexity 1 23 0 432 0 0 0 chr21 39282196 39282244 -5625326 + (TG)n Simple_repeat Simple_repeat 1 48 0 671 170 61 34 chr21 39282271 39282418 -5625152 - MER20 DNA MER1_type -66 153 3 930 215 88 0 chr21 39283141 39283346 -5624224 - MER58A DNA MER1_type -1 223 1 195 348 146 6 chr21 39283372 39283536 -5624034 - L2 LINE L2 -7 3265 3079 383 251 44 60 chr21 39283570 39283753 -5623817 + L2 LINE L2 1713 1892 -1422 189 0 0 0 chr21 39283969 39283990 -5623580 + (A)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr21 39283990 39284011 -5623559 + (GA)n Simple_repeat Simple_repeat 2 22 0 2135 209 38 32 chr21 39285227 39285729 -5621841 - MLT1D LTR MaLR 0 505 1 1705 298 100 37 chr21 39286064 39286757 -5620813 + L2 LINE L2 1491 2139 -1174 2381 123 40 3 chr21 39286757 39287108 -5620462 - THE1B LTR MaLR 0 364 1 1705 298 100 37 chr21 39287108 39287473 -5620097 + L2 LINE L2 2139 2480 -833 2430 208 72 6 chr21 39287473 39287988 -5619582 + MER44D DNA MER2_type 2 605 0 1705 298 100 37 chr21 39287988 39288610 -5618960 + L2 LINE L2 2480 3306 -7 2345 94 3 0 chr21 39288993 39289290 -5618280 + AluSc SINE Alu 1 298 -11 21 0 0 0 chr21 39289732 39289753 -5617817 + AT_rich Low_complexity Low_complexity 1 21 0 294 152 30 45 chr21 39291422 39291488 -5616082 + AluS SINE Alu 6 70 -231 1821 116 24 0 chr21 39291677 39291927 -5615643 + AluSx SINE Alu 46 301 -11 206 352 11 0 chr21 39292925 39293016 -5614554 + MIR SINE MIR 113 204 -58 823 103 34 11 chr21 39293341 39293516 -5614054 + (CA)n Simple_repeat Simple_repeat 2 180 0 639 74 33 107 chr21 39295792 39295877 -5611693 + L1MB3 LINE L1 6066 6141 -42 2189 128 0 0 chr21 39295877 39296174 -5611396 + AluSx SINE Alu 1 297 -15 639 74 33 107 chr21 39296174 39296209 -5611361 + L1MB3 LINE L1 6141 6177 -6 1625 162 16 53 chr21 39296564 39296867 -5610703 + AluJo SINE Alu 2 293 -19 83 21 0 0 chr21 39298575 39298672 -5608898 + AT_rich Low_complexity Low_complexity 1 97 0 206 191 247 11 chr21 39298726 39298815 -5608755 - L2 LINE L2 -1 3312 3203 193 328 31 0 chr21 39298906 39298970 -5608600 - L2 LINE L2 -244 3069 3004 307 230 0 46 chr21 39299206 39299293 -5608277 - L2 LINE L2 -51 3262 3180 420 221 41 23 chr21 39299371 39299480 -5608090 + (TCTA)n Simple_repeat Simple_repeat 4 120 -58 1949 156 0 0 chr21 39299480 39299788 -5607782 - AluSx SINE Alu 0 308 1 420 221 41 23 chr21 39299788 39299849 -5607721 + (TCTA)n Simple_repeat Simple_repeat 120 178 0 1457 222 143 118 chr21 39301739 39302808 -5604762 + MER52A LTR ERV1 660 1755 0 2332 99 0 0 chr21 39303007 39303311 -5604259 + AluSx SINE Alu 1 304 -8 1885 99 8 19 chr21 39303382 39303644 -5603926 - AluSx SINE Alu -17 295 37 1699 174 47 36 chr21 39303684 39304070 -5603500 - MLT1B LTR MaLR 0 390 1 2167 126 0 7 chr21 39304102 39304412 -5603158 + AluSc SINE Alu 1 308 -1 433 309 111 32 chr21 39305311 39306021 -5601549 + L1M4 LINE L1 4537 5302 -844 1074 220 40 101 chr21 39306139 39306517 -5601053 - MLT1A1 LTR MaLR -5 360 6 414 226 97 62 chr21 39306877 39307003 -5600567 + MLT1J2 LTR MaLR 6 143 -307 4157 110 55 0 chr21 39307003 39307605 -5599965 + MER41B LTR ERV1 1 635 0 414 226 97 62 chr21 39307605 39307673 -5599897 + MLT1J2 LTR MaLR 143 207 -243 3603 137 51 2 chr21 39307730 39308308 -5599262 - MER4B LTR ERV1 0 601 5 5517 176 39 4 chr21 39308847 39310763 -5596807 - L1PA16 LINE L1 -16 6150 4170 601 150 0 53 chr21 39311407 39311480 -5596090 + MLT1A1 LTR MaLR 259 325 -40 2235 106 0 3 chr21 39311480 39311822 -5595748 - AluSx SINE Alu 0 312 1 601 150 0 53 chr21 39311822 39311861 -5595709 + MLT1A1 LTR MaLR 325 365 0 2193 60 14 32 chr21 39312197 39312659 -5594911 + AluY SINE Alu 11 467 0 843 294 79 23 chr21 39314025 39314416 -5593154 - MLT1C LTR MaLR 0 467 55 973 126 0 0 chr21 39314835 39314978 -5592592 + AluSg/x SINE Alu 166 308 -2 427 320 118 37 chr21 39314998 39315623 -5591947 + L1MC4a LINE L1 5255 5930 -1878 599 0 0 14 chr21 39317774 39317846 -5589724 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 21 0 0 0 chr21 39319132 39319153 -5588417 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr21 39319242 39319277 -5588293 + AT_rich Low_complexity Low_complexity 1 35 0 724 172 75 11 chr21 39319302 39319476 -5588094 + MER33 DNA MER1_type 38 222 -102 739 44 0 0 chr21 39319494 39319584 -5587986 + AluYb8 SINE Alu 217 306 -12 639 204 15 29 chr21 39319706 39319843 -5587727 + AluJo SINE Alu 3 137 -175 261 0 0 0 chr21 39319953 39319982 -5587588 + (CA)n Simple_repeat Simple_repeat 2 30 0 994 115 34 0 chr21 39320226 39320374 -5587196 - AluSg/x SINE Alu -3 309 157 256 328 70 16 chr21 39321178 39321306 -5586264 + MIR SINE MIR 51 185 -77 1810 175 78 6 chr21 39321550 39321898 -5585672 - MLT1B LTR MaLR 0 390 18 231 373 16 16 chr21 39321966 39322092 -5585478 + L3 LINE CR1 201 326 -1251 213 304 0 0 chr21 39322154 39322200 -5585370 - L2 LINE L2 -10 3262 3217 289 253 73 40 chr21 39323296 39323446 -5584124 - L2 LINE L2 -856 2458 2304 3089 207 37 170 chr21 39324239 39325700 -5581870 - MLT1D-int LTR MaLR -41 1330 64 2488 87 3 0 chr21 39325711 39326023 -5581547 - AluSp SINE Alu 0 313 1 2218 195 25 48 chr21 39326108 39326610 -5580960 - MLT1D LTR MaLR 0 505 14 2780 118 21 12 chr21 39326610 39327034 -5580536 + MSTA LTR MaLR 1 428 0 2218 195 25 48 chr21 39327034 39327048 -5580522 - MLT1D LTR MaLR -491 14 1 195 299 142 0 chr21 39327841 39327968 -5579602 - MIR SINE MIR -52 210 66 23 54 0 0 chr21 39328016 39328053 -5579517 + AT_rich Low_complexity Low_complexity 1 37 0 729 148 14 21 chr21 39329331 39329473 -5578097 - L1MB1 LINE L1 0 6168 6028 1108 59 0 0 chr21 39329473 39329604 -5577966 - AluSp/q SINE Alu -14 299 169 2109 231 127 16 chr21 39329604 39329854 -5577716 - L1MB4 LINE L1 -141 6039 5818 378 0 0 0 chr21 39329854 39329896 -5577674 + (TG)n Simple_repeat Simple_repeat 2 43 0 2109 231 127 16 chr21 39329896 39330569 -5577001 - L1MB4 LINE L1 -362 5818 5015 1412 107 31 41 chr21 39331019 39331297 -5576273 + THE1B LTR MaLR 1 364 0 337 308 129 61 chr21 39332099 39332541 -5575029 + L1MEd LINE L1 67 538 -5581 548 243 20 14 chr21 39332575 39332723 -5574847 - MER3 DNA MER1_type -47 162 14 2193 104 0 0 chr21 39333306 39333584 -5573986 + AluSg SINE Alu 23 300 -10 218 282 96 39 chr21 39333645 39333801 -5573769 - MIR SINE MIR -52 210 46 2198 106 3 31 chr21 39334599 39334919 -5572651 + AluSx SINE Alu 1 311 -1 507 251 131 10 chr21 39335213 39335412 -5572158 - MLT2E LTR ERVL -388 240 18 355 313 35 35 chr21 39335453 39335680 -5571890 + L1MC/D LINE L1 5410 5636 -2172 23 97 0 0 chr21 39336110 39336182 -5571388 + AT_rich Low_complexity Low_complexity 1 72 0 285 284 156 0 chr21 39337057 39337166 -5570404 - L2 LINE L2 -1 3271 3146 625 322 81 25 chr21 39337551 39338184 -5569386 - L2 LINE L2 -557 2757 2090 2010 132 15 4 chr21 39338566 39338862 -5568708 + AluSx SINE Alu 2 298 -14 1082 69 17 17 chr21 39338862 39339037 -5568533 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 269 158 35 0 chr21 39339037 39339094 -5568476 + GA-rich Low_complexity Low_complexity 2 60 0 191 161 48 32 chr21 39339376 39339438 -5568132 - L2 LINE L2 -2910 404 342 766 195 70 35 chr21 39339740 39339940 -5567630 - MLT1C LTR MaLR 0 467 261 186 321 21 84 chr21 39340616 39340727 -5566843 + L2 LINE L2 2602 2698 -616 2355 72 14 0 chr21 39340727 39341045 -5566525 + AluSc SINE Alu 1 309 0 186 321 21 84 chr21 39341045 39341123 -5566447 + L2 LINE L2 2698 2779 -535 2297 116 0 0 chr21 39341494 39341795 -5565775 - AluSx SINE Alu -10 302 2 1922 51 0 21 chr21 39341869 39342103 -5565467 - AluY SINE Alu -1 310 82 365 266 95 12 chr21 39342238 39342407 -5565163 - LTR67 LTR ERVL 0 557 375 2248 128 3 0 chr21 39342421 39342727 -5564843 + AluSx SINE Alu 1 307 -5 6003 34 2 1 chr21 39342986 39343008 -5564562 + L1P LINE L1 2680 2700 -3446 5419 23 0 0 chr21 39343008 39343623 -5563947 - L1PA3 LINE L1 0 6155 5541 6003 34 2 1 chr21 39343623 39344385 -5563185 + L1P LINE L1 2700 3465 -2681 2163 83 35 14 chr21 39344927 39345217 -5562353 - AluY SINE Alu -15 296 1 2198 149 24 5 chr21 39345876 39346286 -5561284 - L1MB3 LINE L1 -11 6172 5755 2323 106 0 7 chr21 39346823 39347124 -5560446 + AluJb SINE Alu 1 299 -13 334 315 102 51 chr21 39347462 39347795 -5559775 + L2 LINE L2 2948 3297 -16 2397 94 7 0 chr21 39347856 39348163 -5559407 - AluSc SINE Alu 0 309 1 293 247 82 57 chr21 39348236 39348394 -5559176 + LTR41 LTR ERVL 2 163 -610 3520 105 5 84 chr21 39348706 39349278 -5558292 - MER1A DNA MER1_type 0 527 1 705 299 33 17 chr21 39349596 39349837 -5557733 - MIR SINE MIR -2 260 16 244 181 422 0 chr21 39350284 39350367 -5557203 + L2 LINE L2 3193 3310 -3 2390 82 7 0 chr21 39352024 39352316 -5555254 + AluSp SINE Alu 1 294 -19 2238 94 19 43 chr21 39352582 39352644 -5554926 - L1MA5A LINE L1 -2 6295 6233 2411 90 0 10 chr21 39352644 39352944 -5554626 - AluSx SINE Alu -14 298 2 2238 94 19 43 chr21 39352944 39353255 -5554315 - L1MA5A LINE L1 -64 6233 5931 1893 224 75 4 chr21 39353381 39353850 -5553720 - MLT1D LTR MaLR -3 502 1 439 316 42 5 chr21 39353951 39354163 -5553407 + L1MEc LINE L1 51 270 -6126 2421 97 0 3 chr21 39354284 39354595 -5552975 + AluSg SINE Alu 1 310 0 323 388 24 34 chr21 39354628 39354837 -5552733 + L1MEc LINE L1 269 475 -5921 358 312 13 39 chr21 39354990 39355144 -5552426 + L1MEc LINE L1 589 738 -5658 1972 176 0 10 chr21 39355144 39355457 -5552113 + AluJo SINE Alu 1 310 -2 958 294 41 34 chr21 39355493 39356105 -5551465 + L1MEc LINE L1 731 1346 -5050 638 195 0 17 chr21 39356105 39356223 -5551347 - MLT1A1 LTR MaLR 0 374 259 738 144 23 15 chr21 39356230 39356362 -5551208 - MLT1A1 LTR MaLR -220 145 13 1015 255 58 84 chr21 39356394 39357071 -5550499 + L1MEc LINE L1 1389 2049 -4347 1244 181 152 39 chr21 39357071 39357380 -5550190 + MER2 DNA MER2_type 1 344 0 1015 255 58 84 chr21 39357380 39357405 -5550165 + L1MEc LINE L1 2049 2073 -4323 216 97 0 0 chr21 39357793 39357824 -5549746 + (TG)n Simple_repeat Simple_repeat 2 32 0 339 362 9 0 chr21 39357994 39358110 -5549460 - MIR SINE MIR -143 119 3 244 268 46 92 chr21 39358252 39358405 -5549165 - L2 LINE L2 -229 3043 2898 204 373 0 51 chr21 39358702 39358820 -5548750 - L2 LINE L2 -77 3195 3084 617 263 102 15 chr21 39358836 39359102 -5548468 - LTR16C LTR ERVL -15 476 188 180 284 69 52 chr21 39359224 39359340 -5548230 - L2 LINE L2 -212 3060 2943 1967 133 10 27 chr21 39359494 39359813 -5547757 + AluSx SINE Alu 1 312 0 271 220 66 33 chr21 39361218 39361309 -5546261 + MIR SINE MIR 48 141 -121 506 293 156 4 chr21 39361822 39362085 -5545485 + L2 LINE L2 2016 2318 -996 361 262 118 27 chr21 39362376 39362563 -5545007 + LTR16C LTR ERVL 287 490 -1 338 299 31 0 chr21 39362642 39362739 -5544831 + MER52A LTR ERV1 1 100 -1655 6512 178 121 23 chr21 39362739 39364125 -5543445 + MER52A LTR ERV1 235 1755 0 441 301 66 63 chr21 39364150 39364452 -5543118 + L2 LINE L2 2457 2759 -555 2079 153 119 18 chr21 39364762 39365148 -5542422 + MSTB LTR MaLR 2 426 0 265 268 66 20 chr21 39365512 39365648 -5541922 - MIR3 SINE MIR -63 145 15 290 185 62 7 chr21 39365789 39365935 -5541635 + (CA)n Simple_repeat Simple_repeat 1 154 0 273 219 0 31 chr21 39365947 39366011 -5541559 + (CA)n Simple_repeat Simple_repeat 2 63 0 240 275 58 0 chr21 39366200 39366269 -5541301 + MIR SINE MIR 84 156 -106 189 0 0 0 chr21 39367183 39367204 -5540366 + (TGG)n Simple_repeat Simple_repeat 3 23 0 187 273 55 0 chr21 39367271 39367326 -5540244 + L2 LINE L2 3178 3235 -37 260 345 26 17 chr21 39367836 39367952 -5539618 + L2 LINE L2 3193 3309 -4 225 65 0 0 chr21 39368076 39368107 -5539463 + (TC)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr21 39368258 39368280 -5539290 + AT_rich Low_complexity Low_complexity 1 22 0 655 283 81 0 chr21 39368795 39368993 -5538577 - MIR SINE MIR -16 246 33 417 258 94 8 chr21 39370231 39370359 -5537211 - MLT1B LTR MaLR -2 388 250 342 283 123 43 chr21 39370587 39370725 -5536845 - MIR3 SINE MIR -58 150 2 1612 227 0 3 chr21 39371765 39372078 -5535492 - AluJo SINE Alu 0 312 1 1610 164 87 0 chr21 39372080 39372367 -5535203 - AluJo SINE Alu 0 312 1 323 287 36 75 chr21 39372738 39372972 -5534598 + MIR SINE MIR 34 259 -3 343 257 57 9 chr21 39374157 39374262 -5533308 + MER91C DNA MER1_type 14 123 -17 401 223 41 50 chr21 39375534 39375655 -5531915 + MIR SINE MIR 114 233 -29 186 191 63 48 chr21 39375655 39375718 -5531852 + MIR SINE MIR 170 233 -29 243 191 44 29 chr21 39375777 39375845 -5531725 + MIR SINE MIR 165 233 -29 358 146 40 54 chr21 39376678 39377201 -5530369 + (TG)n Simple_repeat Simple_repeat 1 516 0 239 191 16 16 chr21 39377233 39377296 -5530274 + (TG)n Simple_repeat Simple_repeat 1 63 0 427 217 248 0 chr21 39377886 39378015 -5529555 + MIR SINE MIR 94 254 -8 371 119 15 0 chr21 39378166 39378233 -5529337 + (GA)n Simple_repeat Simple_repeat 1 68 0 2348 109 41 19 chr21 39378550 39378917 -5528653 - THE1C LTR MaLR 0 375 1 563 275 0 36 chr21 39379602 39379740 -5527830 - L2 LINE L2 -1 3312 3180 330 200 0 0 chr21 39379835 39379890 -5527680 + polypurine Low_complexity Low_complexity 2 56 0 575 209 8 25 chr21 39379896 39380136 -5527434 + GA-rich Low_complexity Low_complexity 1 236 0 1811 260 118 33 chr21 39380276 39381237 -5526333 - L2 LINE L2 -345 2969 1928 2223 108 10 3 chr21 39381303 39381598 -5525972 - AluSc SINE Alu -12 297 1 181 339 0 0 chr21 39382101 39382157 -5525413 + MIR SINE MIR 93 148 -114 207 0 0 0 chr21 39382763 39382786 -5524784 + (CAACC)n Simple_repeat Simple_repeat 2 24 0 331 363 77 6 chr21 39382933 39383174 -5524396 - MIR SINE MIR 0 262 2 2018 141 3 38 chr21 39383305 39383625 -5523945 + AluSq SINE Alu 1 309 -4 5222 142 46 29 chr21 39383627 39384642 -5522928 + Tigger3b DNA MER2_type 199 1231 0 276 221 126 24 chr21 39384822 39384949 -5522621 - HAL1 LINE L1 -874 1633 1494 249 200 163 44 chr21 39385042 39385202 -5522368 - HAL1 LINE L1 -1181 1326 1148 209 293 13 0 chr21 39386211 39386286 -5521284 + MER5B DNA MER1_type 1 76 -102 223 250 0 18 chr21 39386313 39386369 -5521201 + CT-rich Low_complexity Low_complexity 4 58 0 301 146 0 0 chr21 39386717 39386772 -5520798 + L1PB3 LINE L1 6078 6132 -22 449 47 16 0 chr21 39386797 39386861 -5520709 + (TA)n Simple_repeat Simple_repeat 2 66 0 239 231 15 0 chr21 39386867 39386932 -5520638 + L1ME1 LINE L1 6096 6161 -5 2456 81 3 0 chr21 39386955 39387265 -5520305 + AluY SINE Alu 1 311 0 1035 265 143 22 chr21 39387529 39387845 -5519725 - HsTC2 DNA Tc2 -19 1879 1603 1378 242 66 35 chr21 39387845 39388333 -5519237 - MLT1D LTR MaLR -2 503 1 1035 265 143 22 chr21 39388333 39388526 -5519044 - HsTC2 DNA Tc2 -295 1603 1132 261 250 169 15 chr21 39389217 39389353 -5518217 + MIR SINE MIR 28 184 -78 204 315 63 8 chr21 39389635 39389762 -5517808 + L2 LINE L2 2572 2705 -609 269 301 65 8 chr21 39389782 39389905 -5517665 + L2 LINE L2 3136 3265 -7 451 242 161 7 chr21 39390059 39390208 -5517362 + MIR SINE MIR 20 191 -71 737 217 130 16 chr21 39390242 39390495 -5517075 - L1MC5 LINE L1 -182 7779 7498 321 210 0 0 chr21 39390495 39390557 -5517013 - MER58A DNA MER1_type 0 224 163 484 147 0 0 chr21 39390577 39390652 -5516918 - MER58A DNA MER1_type -7 100 26 1768 207 81 85 chr21 39390676 39391382 -5516188 - L1MC5 LINE L1 -623 7338 6636 200 200 22 0 chr21 39393542 39393587 -5513983 + G-rich Low_complexity Low_complexity 3 48 0 276 288 27 20 chr21 39394400 39394546 -5513024 + C-rich Low_complexity Low_complexity 6 152 0 24 0 0 0 chr21 39394601 39394625 -5512945 + GC_rich Low_complexity Low_complexity 1 24 0 205 162 0 0 chr21 39395345 39395382 -5512188 + C-rich Low_complexity Low_complexity 1 37 0 430 328 52 48 chr21 39397175 39397425 -5510145 - MIR SINE MIR 0 262 12 362 311 51 38 chr21 39398755 39398952 -5508618 - MIR SINE MIR -50 212 17 1115 240 115 8 chr21 39399175 39399550 -5508020 - MLT1C LTR MaLR -52 415 1 2289 98 0 14 chr21 39399826 39400123 -5507447 + AluSx SINE Alu 1 293 -19 2321 90 13 0 chr21 39400506 39400805 -5506765 - AluSc SINE Alu -6 303 1 549 273 17 34 chr21 39402327 39402503 -5505067 + MIR3 SINE MIR 26 198 -10 196 294 0 0 chr21 39402774 39402825 -5504745 - MER5A DNA MER1_type -76 113 63 484 260 130 13 chr21 39403102 39403333 -5504237 - MER5C DNA MER1_type 0 324 67 181 326 11 67 chr21 39403977 39404066 -5503504 + MIR SINE MIR 173 256 -6 973 224 28 19 chr21 39404309 39404523 -5503047 + MER20 DNA MER1_type 4 219 0 1777 149 31 38 chr21 39404819 39405107 -5502463 + AluJo SINE Alu 1 286 -26 513 306 147 29 chr21 39405109 39405517 -5502053 - L2 LINE L2 -22 3291 2836 258 149 26 129 chr21 39405608 39405802 -5501768 + (TGAG)n Simple_repeat Simple_repeat 2 175 0 249 246 31 0 chr21 39406185 39406250 -5501320 - LTR16C LTR ERVL -14 477 411 2591 150 101 11 chr21 39406250 39406696 -5500874 - MER66B LTR ERV1 0 486 1 11955 112 48 75 chr21 39406696 39407829 -5499741 - MER66B-int LTR ERV1 0 6676 5549 194 338 12 38 chr21 39407829 39407909 -5499661 - L3 LINE CR1 -1392 185 108 11955 112 48 75 chr21 39407909 39408894 -5498676 - MER66B-int LTR ERV1 -1127 5549 4539 414 255 102 25 chr21 39408905 39409062 -5498508 + MER4B-int LTR ERV1 6395 6563 -195 9317 238 86 66 chr21 39409080 39412967 -5494603 - MER66B-int LTR ERV1 -2709 3967 1 3080 151 10 4 chr21 39412967 39413450 -5494120 - MER66B LTR ERV1 0 486 1 325 361 52 5 chr21 39413466 39413660 -5493910 - LTR16C LTR ERVL -134 357 155 2238 144 72 19 chr21 39414749 39415178 -5492392 - LTR47A LTR ERVL 0 452 1 784 234 82 48 chr21 39415381 39416058 -5491512 - HAL1 LINE L1 -941 1566 793 3139 74 19 61 chr21 39416102 39416563 -5491007 - MLT2A1 LTR ERVL -2 442 1 32614 57 8 2 chr21 39416563 39420681 -5486889 - HERVL-A1 LTR ERVL 0 5654 1511 1154 198 18 9 chr21 39421419 39421641 -5485929 + MER58A DNA MER1_type 1 224 0 666 247 115 74 chr21 39422289 39422369 -5485201 + L1MC4a LINE L1 5555 5630 -2178 2211 117 0 46 chr21 39422369 39422695 -5484875 + AluSx SINE Alu 1 311 -1 666 247 115 74 chr21 39422695 39422979 -5484591 + L1MC4a LINE L1 5630 5934 -1874 1622 192 11 0 chr21 39423321 39423626 -5483944 - AluJb SINE Alu 0 308 1 183 42 0 0 chr21 39423633 39423657 -5483913 + (T)n Simple_repeat Simple_repeat 1 24 0 1125 218 137 23 chr21 39423673 39424105 -5483465 + Charlie7 DNA MER1_type 1600 2080 -532 520 279 43 0 chr21 39424111 39424251 -5483319 - MIR SINE MIR -115 147 2 2129 142 3 0 chr21 39424355 39424657 -5482913 - AluSx SINE Alu -9 303 1 342 0 0 0 chr21 39425216 39425254 -5482316 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2302 50 0 0 chr21 39425254 39425531 -5482039 - L1PA5 LINE L1 -16 6138 5862 202 214 0 36 chr21 39425642 39425698 -5481872 + CT-rich Low_complexity Low_complexity 3 56 0 917 28 0 0 chr21 39426245 39426353 -5481217 - L1PA4 LINE L1 -222 5933 5826 1804 41 9 0 chr21 39426353 39426567 -5481003 + L1PA4 LINE L1 5935 6155 0 1681 160 57 43 chr21 39426919 39427288 -5480282 + MLT1B LTR MaLR 1 374 -16 222 288 0 41 chr21 39428646 39428719 -5478851 + L3 LINE CR1 1143 1212 -365 223 258 125 29 chr21 39429132 39429266 -5478304 + MER5A DNA MER1_type 1 164 -14 859 281 45 45 chr21 39429393 39429862 -5477708 - L2 LINE L2 -17 3296 2828 * 884 285 190 25 chr21 39429851 39430422 -5477148 - L2 LINE L2 -908 2406 1676 1884 95 0 84 chr21 39430422 39430707 -5476863 - AluSq SINE Alu -52 261 1 884 285 190 25 chr21 39430707 39430899 -5476671 - L2 LINE L2 -1638 1676 1517 190 246 87 29 chr21 39432211 39432280 -5475290 + L2 LINE L2 3241 3313 0 2637 174 25 15 chr21 39432302 39432445 -5475125 + L1MB3 LINE L1 5649 5789 -394 1588 210 48 14 chr21 39432445 39432798 -5474772 - MLT1A1 LTR MaLR 0 365 1 2637 174 25 15 chr21 39432798 39433184 -5474386 + L1MB3 LINE L1 5789 6183 0 332 289 133 7 chr21 39436008 39436143 -5471427 - MIR SINE MIR -110 152 1 4499 171 40 16 chr21 39436553 39437445 -5470125 + MER49 LTR ERV1 1 914 -9 1824 197 19 14 chr21 39438443 39438804 -5468766 - MLT1A1 LTR MaLR -2 363 1 592 335 43 4 chr21 39438856 39439110 -5468460 - LTR16C LTR ERVL -81 410 147 2267 92 0 3 chr21 39439859 39440151 -5467419 + AluSg SINE Alu 1 291 -19 223 328 137 8 chr21 39440397 39440528 -5467042 - MIR SINE MIR -8 254 107 385 232 0 12 chr21 39441065 39441147 -5466423 - L2 LINE L2 0 3313 3233 2297 86 3 0 chr21 39443292 39443595 -5463975 - AluSg SINE Alu -6 304 1 643 237 32 16 chr21 39444256 39444442 -5463128 + MLT1C LTR MaLR 276 464 -3 716 294 108 32 chr21 39444546 39444981 -5462589 + HAL1b LINE L1 328 795 -553 2347 69 0 0 chr21 39445236 39445527 -5462043 - AluSc SINE Alu -18 291 1 4443 193 57 4 chr21 39446127 39446941 -5460629 - MER21B LTR ERV1 0 863 7 212 133 44 0 chr21 39447061 39447106 -5460464 + (TA)n Simple_repeat Simple_repeat 2 48 0 899 114 0 50 chr21 39447279 39447419 -5460151 + FLAM_C SINE Alu 1 133 0 2405 49 0 10 chr21 39447910 39448218 -5459352 + AluY SINE Alu 1 305 -6 197 280 56 56 chr21 39448223 39448330 -5459240 - L2 LINE L2 -27 3286 3180 621 301 51 9 chr21 39448393 39448609 -5458961 + MIR SINE MIR 15 239 -23 538 294 127 38 chr21 39448710 39449363 -5458207 - L2 LINE L2 -252 3061 2328 1123 225 80 58 chr21 39449380 39449438 -5458132 - MLT1C LTR MaLR -7 460 405 1969 132 7 7 chr21 39449438 39449734 -5457836 + AluJo SINE Alu 1 296 -16 1123 225 80 58 chr21 39449734 39450123 -5457447 - MLT1C LTR MaLR -62 405 3 936 268 89 6 chr21 39450124 39450482 -5457088 - L2 LINE L2 -982 2332 1945 1964 84 91 0 chr21 39450576 39450851 -5456719 - AluY SINE Alu -7 304 5 248 250 179 0 chr21 39450948 39451032 -5456538 - L2 LINE L2 -5 3267 3169 1949 254 83 46 chr21 39451033 39451319 -5456251 + L1ME3 LINE L1 5341 5615 -547 2248 88 0 0 chr21 39451319 39451616 -5455954 + AluY SINE Alu 1 297 -14 1949 254 83 46 chr21 39451616 39452115 -5455455 + L1ME3 LINE L1 5615 6158 -4 201 241 0 0 chr21 39452836 39452890 -5454680 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 239 273 80 11 chr21 39454318 39454406 -5453164 - MIR3 SINE MIR -28 180 87 1099 251 120 17 chr21 39454417 39454741 -5452829 - MER20B DNA MER1_type 0 783 494 2222 151 66 12 chr21 39454741 39455151 -5452419 - MSTB1 LTR MaLR 0 432 1 1099 251 120 17 chr21 39455151 39455509 -5452061 - MER20B DNA MER1_type -289 494 2 743 191 153 11 chr21 39458418 39458601 -5448969 - MER3 DNA MER1_type 0 209 1 2324 157 47 10 chr21 39458818 39459227 -5448343 + MSTB LTR MaLR 1 424 -2 2265 51 4 0 chr21 39459235 39459509 -5448061 - AluY SINE Alu -12 299 25 890 256 13 22 chr21 39459570 39459820 -5447750 - MIR SINE MIR 0 262 18 2098 112 0 0 chr21 39460045 39460339 -5447231 + AluSx SINE Alu 1 294 -18 2198 122 36 33 chr21 39460363 39460723 -5446847 + THE1B LTR MaLR 4 364 0 995 230 9 35 chr21 39460724 39460954 -5446616 + MER58A DNA MER1_type 1 224 0 709 279 18 33 chr21 39461621 39461897 -5445673 - L1ME4a LINE L1 -266 5855 5584 1544 193 3 17 chr21 39461921 39462216 -5445354 + AluJo SINE Alu 1 291 -21 306 73 0 0 chr21 39462217 39462258 -5445312 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 223 291 70 0 chr21 39462583 39462669 -5444901 + L2 LINE L2 2926 3017 -296 2260 60 0 4 chr21 39463536 39463854 -5443716 + AluSc SINE Alu 1 317 0 4157 23 0 0 chr21 39464863 39465337 -5442233 + L1PA2 LINE L1 5682 6155 0 1855 166 3 6 chr21 39465734 39466047 -5441523 - AluSx SINE Alu 0 312 1 240 345 68 14 chr21 39466629 39466777 -5440793 + MER5B DNA MER1_type 18 173 -5 449 237 209 0 chr21 39466812 39466951 -5440619 - MIR SINE MIR -32 230 63 252 43 43 21 chr21 39469258 39469305 -5438265 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 2100 79 4 0 chr21 39469305 39469582 -5437988 - AluSg SINE Alu -32 278 1 2954 102 11 33 chr21 39470634 39471094 -5436476 - LTR7 LTR ERV1 0 450 1 351 44 0 0 chr21 39471234 39471279 -5436291 + (TG)n Simple_repeat Simple_repeat 2 46 0 232 296 102 9 chr21 39472076 39472184 -5435386 + MIR3 SINE MIR 70 187 -21 24 53 0 0 chr21 39472599 39472637 -5434933 + AT_rich Low_complexity Low_complexity 1 38 0 385 327 155 11 chr21 39476341 39476619 -5430951 - L2 LINE L2 0 3313 2996 568 191 104 33 chr21 39476693 39476908 -5430662 + MIR SINE MIR 3 235 -27 757 299 80 42 chr21 39477442 39477844 -5429726 - MLT1H LTR MaLR -132 417 1 2338 87 3 0 chr21 39477889 39478199 -5429371 + AluSx SINE Alu 1 311 -1 246 326 77 4 chr21 39479299 39479418 -5428152 + MIR SINE MIR 40 163 -68 2186 93 0 7 chr21 39479530 39479830 -5427740 + AluSg SINE Alu 1 298 -12 762 284 140 40 chr21 39481292 39481891 -5425679 - L2 LINE L2 -677 2637 1979 292 350 50 0 chr21 39481949 39482069 -5425501 + L2 LINE L2 3136 3261 -11 4298 117 37 70 chr21 39482071 39482458 -5425112 + MER4E LTR ERV1 1 331 -435 2836 80 0 8 chr21 39482458 39482832 -5424738 - L1PA7 LINE L1 0 6154 5784 4298 117 37 70 chr21 39482832 39483254 -5424316 + MER4E LTR ERV1 331 766 0 344 244 70 0 chr21 39483850 39483936 -5423634 + MIR SINE MIR 164 255 -7 23 54 0 0 chr21 39485812 39485849 -5421721 + AT_rich Low_complexity Low_complexity 1 37 0 237 128 0 0 chr21 39486094 39486133 -5421437 - MLT1F LTR MaLR -2 565 527 1509 161 12 46 chr21 39486186 39486509 -5421061 - AluJb SINE Alu 0 312 1 1622 179 7 3 chr21 39486513 39486815 -5420755 - AluJb SINE Alu -9 303 1 690 252 226 41 chr21 39486824 39487213 -5420357 - MLT1F LTR MaLR -78 464 4 294 329 109 5 chr21 39487271 39487636 -5419934 - L1MC4a LINE L1 -233 5937 5512 351 287 101 16 chr21 39487934 39488063 -5419507 - L1MC4a LINE L1 -984 5162 5023 801 262 66 21 chr21 39488174 39488506 -5419064 - L1MC4 LINE L1 0 8042 7696 929 317 117 23 chr21 39488685 39489549 -5418021 - L1MC4a LINE L1 -1263 4883 3939 462 252 25 8 chr21 39489608 39489727 -5417843 + L1ME LINE L1 5599 5719 -443 236 238 36 0 chr21 39489788 39489872 -5417698 + L1ME LINE L1 5727 5813 -349 674 288 47 52 chr21 39489933 39490569 -5417001 - L1MEd LINE L1 -875 1615 889 308 220 34 0 chr21 39490599 39490658 -5416912 - L1MEd LINE L1 -5164 955 895 1587 172 7 20 chr21 39490671 39490769 -5416801 + AluJo SINE Alu 1 99 -213 2217 146 85 10 chr21 39490769 39491167 -5416403 - MSTA LTR MaLR 0 428 1 1587 172 7 20 chr21 39491167 39491370 -5416200 + AluJo SINE Alu 99 298 -14 1351 259 98 18 chr21 39491520 39492069 -5415501 - L1MC4a LINE L1 -1961 5847 5255 427 246 37 52 chr21 39492671 39492862 -5414708 - L1MEd LINE L1 -5341 778 591 327 25 0 0 chr21 39493312 39493352 -5414218 + (TG)n Simple_repeat Simple_repeat 2 41 0 189 275 21 92 chr21 39493429 39493571 -5413999 + MER5B DNA MER1_type 26 157 -21 201 274 16 66 chr21 39494040 39494162 -5413408 - MIR3 SINE MIR -6 202 84 864 244 41 8 chr21 39494458 39494700 -5412870 - MIR SINE MIR 0 262 13 671 174 76 23 chr21 39495000 39495132 -5412438 + FAM SINE Alu 34 172 -13 2265 116 3 0 chr21 39495313 39495624 -5411946 - AluSp SINE Alu -1 312 1 3037 221 60 32 chr21 39495719 39496792 -5410778 - L1ME1 LINE L1 -5 6230 5126 705 227 7 20 chr21 39496806 39496956 -5410614 - FRAM SINE Alu -30 146 1 2207 253 36 1 chr21 39496957 39497649 -5409921 - L1ME1 LINE L1 -3269 2946 2231 580 222 26 8 chr21 39497652 39497769 -5409801 + MER58 DNA MER1_type 1 119 -2301 381 82 0 0 chr21 39497778 39497827 -5409743 + MER58 DNA MER1_type 2366 2414 -6 3535 236 88 26 chr21 39497833 39499200 -5408370 - L1ME1 LINE L1 -4121 2275 824 1219 170 0 58 chr21 39499206 39499255 -5408315 + MLT1A1 LTR MaLR 1 51 -314 6827 107 34 27 chr21 39499255 39500319 -5407251 - MER11C LTR ERVK 0 1071 1 1219 170 0 58 chr21 39500319 39500510 -5407060 + MLT1A1 LTR MaLR 51 227 -138 2300 100 0 3 chr21 39505684 39505983 -5401587 + AluSx SINE Alu 1 298 -14 182 156 47 62 chr21 39506885 39506949 -5400621 - MER5A DNA MER1_type -88 101 39 264 293 0 0 chr21 39509981 39510063 -5397507 + L2 LINE L2 2234 2315 -999 205 237 114 26 chr21 39510075 39510189 -5397381 - MIR SINE MIR -133 129 6 2180 204 38 15 chr21 39510572 39511106 -5396464 + MER74A LTR ERVL 4 549 -9 345 192 0 26 chr21 39511667 39511744 -5395826 + MLT2B1 LTR ERVL 1 75 -339 1300 213 77 40 chr21 39511744 39512120 -5395450 - MLT1B LTR MaLR 0 390 1 1480 191 100 65 chr21 39512120 39512490 -5395080 + MLT2B1 LTR ERVL 76 465 -55 404 37 19 0 chr21 39512490 39512544 -5395026 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1480 191 100 65 chr21 39512544 39512603 -5394967 + MLT2B1 LTR ERVL 465 520 0 317 281 35 0 chr21 39513070 39513184 -5394386 - L1M4 LINE L1 -1537 4609 4492 575 250 26 0 chr21 39513304 39513460 -5394110 + MIR SINE MIR 71 230 -32 22 35 0 0 chr21 39513479 39513508 -5394062 + AT_rich Low_complexity Low_complexity 1 29 0 299 327 110 31 chr21 39513662 39515462 -5392108 - L1M4 LINE L1 -1065 5081 3139 252 256 64 0 chr21 39515511 39515589 -5391981 - L1P LINE L1 -3123 3023 2941 2079 100 11 84 chr21 39515735 39516094 -5391476 - MER1B DNA MER1_type 0 339 7 269 247 68 0 chr21 39516115 39516188 -5391382 - L1M4 LINE L1 -3393 2753 2676 446 271 110 8 chr21 39517297 39517533 -5390037 + L1ME4a LINE L1 5666 5925 -196 197 362 43 0 chr21 39517762 39517900 -5389670 + L2 LINE L2 2398 2541 -773 2931 144 10 32 chr21 39518468 39518961 -5388609 - MER66B LTR ERV1 0 486 5 3684 83 174 35 chr21 39518961 39519565 -5388005 + LTR12 LTR ERV1 1 688 0 245 231 321 0 chr21 39520401 39520535 -5387035 - MER5A DNA MER1_type 0 189 13 183 278 0 100 chr21 39520725 39520815 -5386755 + L2 LINE L2 3192 3272 0 227 191 0 0 chr21 39520894 39520936 -5386634 + (TG)n Simple_repeat Simple_repeat 1 42 0 294 222 37 25 chr21 39521394 39521475 -5386095 + L2 LINE L2 3228 3309 -4 416 236 70 87 chr21 39521789 39522030 -5385540 - L2 LINE L2 -14 3299 3063 180 204 93 37 chr21 39522680 39522734 -5384836 + L3 LINE CR1 1518 1574 -3 195 191 191 0 chr21 39522913 39522960 -5384610 - MER5A DNA MER1_type -125 64 9 725 181 170 11 chr21 39523008 39523196 -5384374 + MER20 DNA MER1_type 1 218 -1 475 267 35 17 chr21 39523207 39523379 -5384191 + MER5B DNA MER1_type 1 175 -3 2594 155 52 4 chr21 39523886 39524347 -5383223 + L1MA8 LINE L1 5153 5590 -701 725 149 16 0 chr21 39524347 39524466 -5383104 + L1MA8 LINE L1 6158 6280 -11 2594 155 52 4 chr21 39524466 39524720 -5382850 + L1MA8 LINE L1 5590 6280 -11 * 5789 128 9 11 chr21 39524572 39525484 -5382086 + L1PA16 LINE L1 5254 6163 -3 11230 33 5 1 chr21 39525489 39527575 -5379995 + L1PA5 LINE L1 4066 6154 0 183 80 0 0 chr21 39527670 39527695 -5379875 + (TG)n Simple_repeat Simple_repeat 1 25 0 515 141 0 30 chr21 39528521 39528620 -5378950 - L1P LINE L1 -763 5403 5308 5181 144 63 3 chr21 39528624 39529512 -5378058 - Tigger1 DNA MER2_type -31 2387 1447 1739 149 26 23 chr21 39529519 39529828 -5377742 + MER101 LTR ERV1 165 474 0 435 194 43 0 chr21 39529828 39529910 -5377660 - Tigger1 DNA MER2_type -2330 88 3 279 0 0 0 chr21 39530229 39530260 -5377310 + (TG)n Simple_repeat Simple_repeat 1 31 0 14458 138 36 10 chr21 39531901 39533127 -5374443 - Tigger1 DNA MER2_type 0 2418 1226 887 143 19 19 chr21 39533127 39533288 -5374282 - L1PB4 LINE L1 0 6156 5996 14458 138 36 10 chr21 39533288 39534416 -5373154 - Tigger1 DNA MER2_type -1192 1226 1 468 282 95 37 chr21 39534593 39534804 -5372766 - MIR SINE MIR -36 226 5 1985 121 4 0 chr21 39534901 39535174 -5372396 - AluSp SINE Alu 0 313 40 187 274 32 0 chr21 39535434 39535496 -5372074 + MIR SINE MIR 77 140 -122 276 325 8 16 chr21 39536807 39536933 -5370637 + L2 LINE L2 3189 3313 0 682 195 0 0 chr21 39537455 39537583 -5369987 - Charlie1 DNA MER1_type 0 2761 2634 1226 161 0 51 chr21 39537583 39537626 -5369944 + AluJb SINE Alu 92 136 -176 474 18 0 0 chr21 39537626 39537681 -5369889 + (TA)n Simple_repeat Simple_repeat 1 55 0 1226 161 0 51 chr21 39537681 39537854 -5369716 + AluJb SINE Alu 136 297 -15 2034 159 121 65 chr21 39537854 39538173 -5369397 - Charlie1 DNA MER1_type -124 2637 2275 2315 121 22 25 chr21 39538173 39538538 -5369032 - THE1B LTR MaLR 0 364 1 2034 159 121 65 chr21 39538538 39538745 -5368825 - Charlie1 DNA MER1_type -486 2275 2081 472 288 86 0 chr21 39538752 39538891 -5368679 - Charlie1 DNA MER1_type -2610 151 1 327 65 0 0 chr21 39539084 39539130 -5368440 + (TG)n Simple_repeat Simple_repeat 1 46 0 667 250 75 48 chr21 39539588 39539840 -5367730 - L1ME3 LINE L1 -3 6159 5901 486 186 52 100 chr21 39540060 39540175 -5367395 - L1ME3 LINE L1 -249 5915 5813 180 0 0 0 chr21 39540175 39540195 -5367375 + (TTG)n Simple_repeat Simple_repeat 2 21 0 486 186 52 100 chr21 39540195 39540289 -5367281 - L1ME3 LINE L1 -351 5813 5716 180 0 0 0 chr21 39540372 39540392 -5367178 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1665 152 25 65 chr21 39540392 39540748 -5366822 + MLT1A2 LTR MaLR 30 371 -3 4889 148 25 17 chr21 39540984 39541824 -5365746 + L1MB2 LINE L1 5323 6169 -2 206 217 42 50 chr21 39543050 39543170 -5364400 + (CCCG)n Simple_repeat Simple_repeat 2 120 0 240 309 96 0 chr21 39544064 39544158 -5363412 + MIR3 SINE MIR 91 193 -15 1512 173 14 25 chr21 39545286 39545570 -5362000 - AluJo SINE Alu -31 281 1 1871 104 75 99 chr21 39546168 39546492 -5361078 + MLT1B LTR MaLR 7 322 -68 1667 174 0 10 chr21 39546492 39546786 -5360784 - AluJo SINE Alu -21 291 1 1871 104 75 99 chr21 39546786 39546846 -5360724 + MLT1B LTR MaLR 322 382 -8 254 185 33 22 chr21 39548264 39548356 -5359214 + CT-rich Low_complexity Low_complexity 2 94 0 286 371 24 8 chr21 39548782 39548906 -5358664 - L2 LINE L2 -5 3308 3183 320 255 38 68 chr21 39549970 39550229 -5357341 - L2 LINE L2 -20 3293 2953 1505 174 158 6 chr21 39550229 39550546 -5357024 - MLT1A1 LTR MaLR 0 365 1 320 255 38 68 chr21 39550546 39550577 -5356993 - L2 LINE L2 -360 2953 2923 367 293 32 0 chr21 39550631 39550754 -5356816 + Charlie8 DNA MER1_type 91 217 -2200 2064 120 13 0 chr21 39551194 39551502 -5356068 + AluSx SINE Alu 1 312 0 352 274 32 11 chr21 39551887 39551982 -5355588 - MER5A DNA MER1_type -30 159 63 180 268 0 54 chr21 39552036 39552092 -5355478 + L3 LINE CR1 1525 1577 0 658 235 7 0 chr21 39553880 39554033 -5353537 - L1 LINE L1 -3190 2956 2803 799 111 0 0 chr21 39554909 39555017 -5352553 - AluSq/x SINE Alu -204 108 1 815 149 15 0 chr21 39555408 39555542 -5352028 - L1MA8 LINE L1 -53 6238 6103 2511 193 25 61 chr21 39555542 39555932 -5351638 + Tigger7 DNA MER2_type 1 403 -2084 2169 122 0 0 chr21 39555932 39556244 -5351326 - AluSx SINE Alu 0 312 1 2511 193 25 61 chr21 39556244 39556533 -5351037 + Tigger7 DNA MER2_type 403 701 -1786 1327 167 26 4 chr21 39556533 39556761 -5350809 + MER46A DNA MER2_type 1 233 -3 2511 193 25 61 chr21 39556761 39556852 -5350718 + Tigger7 DNA MER2_type 701 2487 0 4614 156 14 21 chr21 39556852 39558079 -5349491 - L1MA8 LINE L1 -187 6104 4884 892 144 115 99 chr21 39558095 39558338 -5349232 - L1MA8 LINE L1 -2111 4035 3789 2384 136 69 27 chr21 39558345 39558749 -5348821 + MSTA LTR MaLR 8 428 0 4246 202 92 21 chr21 39558750 39559631 -5347939 - L1MA8 LINE L1 -2354 3792 2975 3008 125 7 0 chr21 39559631 39560056 -5347514 + MSTA LTR MaLR 1 428 0 10131 144 27 6 chr21 39560056 39561672 -5345898 + MSTA-int LTR MaLR 1 1651 0 2673 127 36 12 chr21 39561672 39562090 -5345480 + MSTA LTR MaLR 1 428 0 4246 202 92 21 chr21 39562090 39562312 -5345258 - L1MA8 LINE L1 -3170 2976 2608 1505 209 13 67 chr21 39562322 39562614 -5344956 + MLT1A1 LTR MaLR 13 282 -83 2082 128 0 0 chr21 39562614 39562910 -5344660 + AluSx SINE Alu 1 296 -16 1505 209 13 67 chr21 39562910 39562990 -5344580 + MLT1A1 LTR MaLR 282 365 0 1328 229 145 18 chr21 39563007 39563500 -5344070 - L1 LINE L1 -3554 2592 2028 185 313 0 21 chr21 39563541 39563589 -5343981 - L2 LINE L2 -56 3257 3211 348 158 63 21 chr21 39564034 39564327 -5343243 + (TG)n Simple_repeat Simple_repeat 1 305 0 439 268 71 40 chr21 39565469 39565693 -5341877 - L1M4 LINE L1 -2533 3613 3383 * 579 287 123 11 chr21 39565683 39566010 -5341560 - L1MC4 LINE L1 -1048 6760 6473 1544 184 20 79 chr21 39566144 39566497 -5341073 - MLT2B3 LTR ERVL 0 554 223 668 176 191 80 chr21 39566489 39566527 -5341043 - MSTD LTR MaLR -175 221 189 * 2363 80 0 0 chr21 39566527 39566826 -5340744 - AluSc SINE Alu -10 299 1 668 176 191 80 chr21 39566826 39566986 -5340584 - MSTD LTR MaLR -207 189 1 230 237 157 107 chr21 39567038 39567300 -5340270 - L1MC4a LINE L1 -1585 6223 5949 306 322 0 22 chr21 39567319 39567409 -5340161 + L1MC4 LINE L1 6615 6702 -1340 1103 227 19 4 chr21 39567450 39567710 -5339860 - L1MC4a LINE L1 -1875 5933 5670 294 237 30 96 chr21 39567710 39567845 -5339725 - L1ME3A LINE L1 -67 6103 5978 864 232 193 0 chr21 39567943 39568197 -5339373 - L1ME3A LINE L1 -219 5951 5649 298 306 27 9 chr21 39568212 39568323 -5339247 - MER77 LTR ERV1 -8 597 485 294 247 14 0 chr21 39568336 39568409 -5339161 - L1MEd LINE L1 -4704 1606 1533 826 277 100 43 chr21 39568413 39569345 -5338225 - L1MEd LINE L1 -4702 1608 592 231 301 12 12 chr21 39569963 39570046 -5337524 + L1 LINE L1 3592 3674 -2472 1700 175 0 7 chr21 39570213 39570504 -5337066 + AluJb SINE Alu 4 292 -20 23 0 0 0 chr21 39572389 39572412 -5335158 + AT_rich Low_complexity Low_complexity 1 23 0 2246 92 10 0 chr21 39573849 39574155 -5333415 + AluSc SINE Alu 1 309 0 334 289 10 0 chr21 39574246 39574350 -5333220 + MER103 DNA DNA 48 152 -14 221 358 9 0 chr21 39575395 39575504 -5332066 + MIR SINE MIR 140 249 -13 292 176 0 20 chr21 39576517 39576568 -5331002 + MIR SINE MIR 81 130 -78 376 241 56 9 chr21 39576714 39576822 -5330748 + MIR SINE MIR 59 171 -91 263 286 13 26 chr21 39578160 39578237 -5329333 - MIR3 SINE MIR -13 195 120 300 200 0 0 chr21 39578793 39578858 -5328712 + GA-rich Low_complexity Low_complexity 3 67 0 2062 92 7 3 chr21 39578891 39579206 -5328364 + AluSq SINE Alu 1 316 0 6186 152 28 43 chr21 39579206 39581232 -5326338 + L1PA12 LINE L1 4185 6168 0 4890 145 43 15 chr21 39581211 39581936 -5325634 + L1MB8 LINE L1 5141 5905 -273 * 225 0 0 0 chr21 39581936 39581961 -5325609 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4890 145 43 15 chr21 39581961 39582243 -5325327 + L1MB8 LINE L1 5905 6178 0 420 20 0 0 chr21 39582416 39582465 -5325105 + (CA)n Simple_repeat Simple_repeat 2 50 0 858 207 10 20 chr21 39582502 39582617 -5324953 - MER3 DNA MER1_type 0 209 95 1828 153 85 9 chr21 39582617 39582957 -5324613 - MER47A DNA MER2_type 0 366 1 858 207 10 20 chr21 39582957 39583039 -5324531 - MER3 DNA MER1_type -114 95 14 1028 190 43 8 chr21 39583080 39583333 -5324237 + L1MA4 LINE L1 6033 6294 -6 271 262 12 36 chr21 39584389 39584473 -5323097 + MIR3 SINE MIR 81 162 -46 272 209 105 23 chr21 39584552 39584638 -5322932 - MLT1I LTR MaLR -31 378 286 1688 209 112 9 chr21 39585081 39585502 -5322068 + MLT1C LTR MaLR 4 467 0 1868 154 0 10 chr21 39586076 39586381 -5321189 + AluSx SINE Alu 3 304 -8 279 253 30 50 chr21 39587579 39587678 -5319892 - MIR3 SINE MIR -22 186 90 330 218 154 0 chr21 39587951 39588029 -5319541 - MER3 DNA MER1_type -22 187 98 434 223 40 27 chr21 39588108 39588256 -5319314 + MER5A DNA MER1_type 39 188 -1 266 147 0 133 chr21 39588924 39588999 -5318571 + MER63 DNA MER1_type 682 746 -316 1935 154 0 0 chr21 39589126 39589438 -5318132 - AluJo SINE Alu 0 312 1 900 181 0 18 chr21 39589619 39589790 -5317780 - FRAM SINE Alu -8 168 1 236 250 259 35 chr21 39589806 39589922 -5317648 + L2 LINE L2 3171 3312 -1 1096 108 24 84 chr21 39590948 39590972 -5316598 + MLT1C LTR MaLR 1 25 -442 3222 79 7 31 chr21 39590972 39591427 -5316143 - MLT2A1 LTR ERVL 0 444 1 1096 108 24 84 chr21 39591427 39591583 -5315987 + MLT1C LTR MaLR 25 189 -278 279 0 0 0 chr21 39591583 39591614 -5315956 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4132 128 10 0 chr21 39591614 39592241 -5315329 - L1PA15 LINE L1 -13 6152 5520 1096 108 24 84 chr21 39592241 39592271 -5315299 + MLT1C LTR MaLR 187 200 -267 504 285 0 0 chr21 39592394 39592524 -5315046 - MER119 DNA MER1_type 0 583 454 343 234 180 27 chr21 39592524 39592635 -5314935 - MER119 DNA MER1_type -449 134 7 375 174 14 0 chr21 39592707 39592776 -5314794 - MSTB1 LTR MaLR 0 432 363 1324 96 5 5 chr21 39592776 39592963 -5314607 + AluSp SINE Alu 1 187 -126 231 36 0 0 chr21 39596210 39596238 -5311332 + (CCCCCG)n Simple_repeat Simple_repeat 3 30 0 196 222 0 0 chr21 39599310 39599346 -5308224 - MIR SINE MIR -9 253 218 * 473 240 58 39 chr21 39599315 39599469 -5308101 - L2 LINE L2 -20 3293 3137 293 196 0 0 chr21 39599549 39599600 -5307970 + L2 LINE L2 3221 3271 -1 192 300 67 0 chr21 39599716 39599776 -5307794 + MIR SINE MIR 58 121 -87 321 304 47 0 chr21 39599906 39600054 -5307516 + L2 LINE L2 2420 2574 -740 189 0 0 0 chr21 39600185 39600206 -5307364 + (A)n Simple_repeat Simple_repeat 1 21 0 220 308 88 0 chr21 39600523 39600614 -5306956 - MIR SINE MIR -77 185 87 427 297 199 20 chr21 39601267 39601711 -5305859 + L2 LINE L2 2716 3235 -37 1512 196 58 56 chr21 39601726 39602174 -5305396 - MLT1C LTR MaLR 0 467 19 231 280 97 11 chr21 39602292 39602385 -5305185 + MIR SINE MIR 90 190 -72 1736 149 0 48 chr21 39602631 39602950 -5304620 + AluJb SINE Alu 1 305 0 24 0 0 0 chr21 39605031 39605055 -5302515 + AT_rich Low_complexity Low_complexity 1 24 0 2600 68 0 0 chr21 39607783 39608090 -5299480 + AluY SINE Alu 1 307 -4 373 105 18 0 chr21 39608135 39608192 -5299378 + L1M4 LINE L1 5519 5576 -608 1097 208 123 2 chr21 39608195 39608481 -5299089 - MLT1F1 LTR MaLR -243 352 1 1902 171 0 3 chr21 39609456 39609760 -5297810 + AluJb SINE Alu 1 303 -9 1848 107 55 76 chr21 39610294 39610677 -5296893 + THE1C LTR MaLR 1 375 0 952 104 75 0 chr21 39611110 39611244 -5296326 + AluSg/x SINE Alu 162 305 -4 2755 158 82 37 chr21 39611450 39611667 -5295903 - Tigger1 DNA MER2_type -1764 654 448 2607 93 14 3 chr21 39611667 39612023 -5295547 + THE1B LTR MaLR 5 364 0 2755 158 82 37 chr21 39612023 39612379 -5295191 - Tigger1 DNA MER2_type -1970 448 55 1119 83 35 3 chr21 39612399 39612629 -5294941 + AluSx SINE Alu 2 312 0 302 125 0 0 chr21 39612632 39612680 -5294890 - Tigger1 DNA MER2_type -2370 48 1 1541 76 0 5 chr21 39613218 39613415 -5294155 + MER107 DNA MER1_type 1 196 -1 1946 273 96 38 chr21 39613849 39614873 -5292697 + L2 LINE L2 1975 3055 -258 640 208 29 117 chr21 39615164 39615404 -5292166 + MER20 DNA MER1_type 1 219 0 1783 173 0 21 chr21 39615612 39615901 -5291669 + AluJo SINE Alu 1 283 -29 393 22 0 0 chr21 39615906 39615952 -5291618 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2481 70 0 3 chr21 39617103 39617402 -5290168 + AluY SINE Alu 1 298 -13 2078 134 17 0 chr21 39617769 39618061 -5289509 - AluSx SINE Alu -15 297 1 183 80 0 0 chr21 39618158 39618183 -5289387 + (T)n Simple_repeat Simple_repeat 1 25 0 2281 87 26 0 chr21 39618204 39618514 -5289056 - L1PA12 LINE L1 -2 6166 5849 2489 180 32 2 chr21 39618592 39619064 -5288506 + L1MB3 LINE L1 5691 6176 -7 2360 94 10 3 chr21 39619202 39619511 -5288059 + AluSx SINE Alu 1 311 -1 1447 290 121 40 chr21 39619742 39620931 -5286639 + L2 LINE L2 1872 3161 -152 2202 90 39 0 chr21 39621040 39621319 -5286251 + AluSg SINE Alu 1 290 -20 447 92 0 0 chr21 39621336 39621401 -5286169 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 218 261 0 0 chr21 39621698 39621744 -5285826 + L2 LINE L2 3263 3308 -5 239 363 58 35 chr21 39622888 39623059 -5284511 + MIR SINE MIR 66 240 -22 406 257 97 40 chr21 39623197 39623372 -5284198 - MER5A DNA MER1_type -3 186 2 418 186 254 17 chr21 39623551 39623669 -5283901 + MIR SINE MIR 95 240 -22 205 238 163 0 chr21 39623706 39623786 -5283784 + MIR SINE MIR 92 184 -78 2287 110 3 0 chr21 39624410 39624702 -5282868 + AluSp SINE Alu 2 294 -19 296 246 16 0 chr21 39625042 39625103 -5282467 - MER5A DNA MER1_type 0 189 128 348 192 110 0 chr21 39625114 39625187 -5282383 + AluSc SINE Alu 11 91 -208 2008 156 0 7 chr21 39625948 39626249 -5281321 - AluJb SINE Alu -13 299 1 1552 166 58 58 chr21 39626891 39627085 -5280485 - THE1C LTR MaLR -7 368 172 2259 119 0 0 chr21 39627085 39627388 -5280182 - AluSq SINE Alu -10 303 1 1552 166 58 58 chr21 39627388 39627554 -5280016 - THE1C LTR MaLR -202 173 8 257 122 0 0 chr21 39627554 39627595 -5279975 - MSTA LTR MaLR -380 48 8 303 125 0 0 chr21 39627595 39627643 -5279927 - MSTA LTR MaLR -380 48 1 339 179 30 0 chr21 39627809 39627876 -5279694 - AluJo SINE Alu -2 300 232 1107 171 0 11 chr21 39627876 39628052 -5279518 - AluJo SINE Alu -133 179 6 229 311 0 0 chr21 39628649 39628710 -5278860 + MER5A DNA MER1_type 15 75 -114 2639 134 129 25 chr21 39628907 39629386 -5278184 - MER1A DNA MER1_type 0 529 1 929 204 138 120 chr21 39630784 39631241 -5276329 - MER4C LTR ERV1 0 465 1 297 135 0 0 chr21 39631257 39631309 -5276261 + (A)n Simple_repeat Simple_repeat 1 52 0 1393 135 200 11 chr21 39631410 39631670 -5275900 + AluYa5 SINE Alu 1 309 -2 1301 212 72 29 chr21 39631690 39632039 -5275531 - MLT1A1 LTR MaLR -1 364 1 2346 112 3 3 chr21 39632076 39632388 -5275182 - AluSx SINE Alu 0 312 1 2180 106 14 0 chr21 39632388 39632672 -5274898 - AluSq SINE Alu -25 288 1 295 351 54 42 chr21 39634886 39635054 -5272516 + L2 LINE L2 3103 3272 0 1566 170 10 35 chr21 39635327 39635616 -5271954 + AluJo SINE Alu 1 282 -30 240 35 0 0 chr21 39635621 39635650 -5271920 + (CA)n Simple_repeat Simple_repeat 2 30 0 1527 200 100 17 chr21 39636001 39636361 -5271209 - MLT1B LTR MaLR 0 390 1 453 183 161 22 chr21 39636541 39636678 -5270892 - MLT1H LTR MaLR 0 549 394 18017 148 43 8 chr21 39636837 39643118 -5264452 + L1PB1 LINE L1 1 6506 -361 350 180 9 86 chr21 39643122 39643230 -5264340 + L1MC4 LINE L1 1995 6983 -1339 321 212 10 81 chr21 39643231 39643320 -5264250 + L1MC4 LINE L1 6612 6695 -1347 2461 107 31 8 chr21 39643320 39643356 -5264214 + L1PB1 LINE L1 6476 6510 -357 273 29 0 0 chr21 39643356 39643390 -5264180 + (CTA)n Simple_repeat Simple_repeat 2 35 0 2461 107 31 8 chr21 39643390 39643735 -5263835 + L1PB1 LINE L1 6510 6866 -1 2575 119 14 34 chr21 39643753 39643968 -5263602 - LTR56 LTR ERV1 0 445 227 2348 120 19 30 chr21 39643968 39644334 -5263236 - THE1B LTR MaLR -2 362 1 2575 119 14 34 chr21 39644334 39644564 -5263006 - LTR56 LTR ERV1 -218 227 9 920 169 0 0 chr21 39645117 39645265 -5262305 - FRAM SINE Alu -1 175 28 247 296 165 0 chr21 39645511 39645626 -5261944 + L2 LINE L2 3138 3271 -1 213 268 0 18 chr21 39645626 39645682 -5261888 + GA-rich Low_complexity Low_complexity 4 58 0 324 0 0 0 chr21 39645682 39645718 -5261852 + (CATGT)n Simple_repeat Simple_repeat 2 37 0 799 161 15 84 chr21 39645724 39645889 -5261681 - LTR49 LTR ERV1 -402 342 53 2407 96 0 3 chr21 39645889 39646192 -5261378 + AluSx SINE Alu 1 302 -10 799 161 15 84 chr21 39646192 39646242 -5261328 - LTR49 LTR ERV1 -691 53 1 419 212 20 0 chr21 39646477 39646576 -5260994 - MER5A DNA MER1_type -86 103 3 225 163 0 0 chr21 39646660 39646709 -5260861 + G-rich Low_complexity Low_complexity 4 52 0 8732 47 1 0 chr21 39647265 39648233 -5259337 - LTR5 LTR ERVK 0 969 1 321 167 69 39 chr21 39648269 39648371 -5259199 + MER4A LTR ERV1 1 105 -559 2995 71 16 14 chr21 39648421 39648846 -5258724 + MER41A LTR ERV1 18 443 -111 199 342 155 19 chr21 39649150 39649311 -5258259 + MIR SINE MIR 2 184 -78 4003 95 37 25 chr21 39649341 39650054 -5257516 - LTR17 LTR ERV1 0 780 1 241 167 33 17 chr21 39650206 39650266 -5257304 - MER96 DNA MER1_type? 0 175 115 324 0 0 0 chr21 39650624 39650660 -5256910 + (TG)n Simple_repeat Simple_repeat 2 37 0 1785 130 87 68 chr21 39651531 39651970 -5255600 - LTR7 LTR ERV1 -2 448 2 185 0 40 0 chr21 39652020 39652045 -5255525 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 316 230 23 0 chr21 39652424 39652511 -5255059 - MER5A DNA MER1_type -79 110 22 22 35 0 0 chr21 39652579 39652608 -5254962 + GC_rich Low_complexity Low_complexity 1 29 0 539 86 0 0 chr21 39653855 39653936 -5253634 + L1PA6 LINE L1 6074 6154 0 2214 148 0 0 chr21 39654295 39654605 -5252965 - AluSx SINE Alu -2 310 1 1508 308 77 25 chr21 39655945 39656073 -5251497 + Charlie2b DNA MER1_type 30 150 -2632 1900 100 8 12 chr21 39656073 39656332 -5251238 + AluSc SINE Alu 49 306 -3 1508 308 77 25 chr21 39656332 39657118 -5250452 + Charlie2b DNA MER1_type 150 1039 -1743 538 251 81 78 chr21 39657103 39657422 -5250148 + Charlie2b DNA MER1_type 2291 2613 -249 * 2219 128 0 10 chr21 39657422 39657728 -5249842 - AluSx SINE Alu -9 303 1 538 251 81 78 chr21 39657728 39657867 -5249703 + Charlie2b DNA MER1_type 2613 2750 -32 2083 128 3 7 chr21 39657879 39658176 -5249394 - AluSg1 SINE Alu -13 296 1 371 318 8 0 chr21 39658260 39658386 -5249184 - L2 LINE L2 -2 3311 3185 316 301 63 14 chr21 39659012 39659155 -5248415 + MIR SINE MIR 25 174 -88 627 317 51 12 chr21 39659457 39659541 -5248029 + L1ME3A LINE L1 5565 5644 -526 738 207 16 37 chr21 39659541 39659729 -5247841 + MER5A DNA MER1_type 3 186 -3 627 317 51 12 chr21 39659729 39660004 -5247566 + L1ME3A LINE L1 5644 5944 -226 641 244 116 0 chr21 39660329 39660501 -5247069 + MER20 DNA MER1_type 7 198 -21 465 221 0 36 chr21 39660703 39660843 -5246727 - L1M4 LINE L1 -1355 4791 4657 * 2872 248 82 17 chr21 39660810 39661818 -5245752 - L1MEc LINE L1 -4108 2288 1215 1945 123 70 22 chr21 39661831 39662189 -5245381 - THE1C LTR MaLR 0 375 1 1755 176 73 22 chr21 39662448 39662818 -5244752 - MLT1B LTR MaLR 0 390 2 1798 170 3 7 chr21 39663759 39664047 -5243523 + AluJb SINE Alu 1 287 -25 266 182 18 0 chr21 39664646 39664701 -5242869 - MLT1J LTR MaLR 0 511 456 579 228 273 47 chr21 39664705 39665130 -5242440 - MLT1H LTR MaLR -8 541 21 445 239 97 22 chr21 39665311 39665445 -5242125 - MLT1J LTR MaLR -233 278 135 1526 157 91 21 chr21 39666619 39666905 -5240665 + AluJb SINE Alu 1 306 -6 414 57 0 0 chr21 39668438 39668491 -5239079 + (TG)n Simple_repeat Simple_repeat 1 53 0 459 316 109 56 chr21 39668603 39668999 -5238571 + L1M4 LINE L1 4745 5161 -985 2268 160 35 2 chr21 39669116 39669573 -5237997 + L1MB3 LINE L1 5712 6183 0 452 262 166 7 chr21 39670374 39670519 -5237051 - MER5A DNA MER1_type -6 183 16 1880 91 0 0 chr21 39670734 39670985 -5236585 - AluSg/x SINE Alu 0 330 80 316 341 8 8 chr21 39671320 39671452 -5236118 - L1MEc LINE L1 -5985 220 89 905 264 4 25 chr21 39672586 39672825 -5234745 - MLT1A1 LTR MaLR 0 365 132 1005 162 71 0 chr21 39672825 39673022 -5234548 - Tigger1 DNA MER2_type 0 2418 2208 585 181 151 54 chr21 39672994 39673160 -5234410 - Tigger1 DNA MER2_type -2236 182 1 * 646 200 15 0 chr21 39673161 39673291 -5234279 - MLT1A1 LTR MaLR -233 132 1 2044 156 34 21 chr21 39673479 39673858 -5233712 - MLT1B LTR MaLR -6 384 1 1266 226 63 41 chr21 39673866 39674173 -5233397 + L1MB7 LINE L1 5795 6113 -71 2008 108 44 20 chr21 39674173 39674469 -5233101 - AluSx SINE Alu -9 303 1 1266 226 63 41 chr21 39674469 39674524 -5233046 + L1MB7 LINE L1 6113 6165 -19 2550 66 0 3 chr21 39674964 39675267 -5232303 + AluY SINE Alu 1 302 -9 423 0 0 0 chr21 39675371 39675418 -5232152 + (TG)n Simple_repeat Simple_repeat 2 48 0 1263 276 86 13 chr21 39675825 39676536 -5231034 - MER21B LTR ERV1 -81 782 1 1492 213 121 38 chr21 39676824 39677453 -5230117 + Charlie2 DNA MER1_type 2166 2846 -16 1953 154 0 3 chr21 39678010 39678302 -5229268 + AluSx SINE Alu 21 311 -1 241 327 55 9 chr21 39678417 39678527 -5229043 + MIR SINE MIR 60 174 -88 2025 125 35 46 chr21 39679438 39679805 -5227765 - THE1B LTR MaLR 0 364 2 327 194 45 0 chr21 39679870 39679937 -5227633 + MIR SINE MIR 74 143 -119 3006 183 39 128 chr21 39679997 39680988 -5226582 - MER4D LTR ERV1 0 903 1 237 252 56 65 chr21 39681304 39681344 -5226226 - MER5A DNA MER1_type -80 109 70 2260 118 0 10 chr21 39681344 39681649 -5225921 - AluSx SINE Alu -10 302 1 237 252 56 65 chr21 39681649 39681715 -5225855 - MER5A DNA MER1_type -119 70 4 553 294 129 18 chr21 39682059 39682338 -5225232 - L1MC4a LINE L1 -1879 5929 5620 1742 190 10 61 chr21 39682342 39682399 -5225171 - MLT2C1 LTR ERVL -8 389 331 2136 142 0 16 chr21 39682399 39682741 -5224829 + AluSx SINE Alu 1 312 0 1742 190 10 61 chr21 39682741 39683093 -5224477 - MLT2C1 LTR ERVL -66 331 1 2294 117 0 0 chr21 39683191 39683499 -5224071 - AluSg SINE Alu -2 308 1 354 279 36 10 chr21 39683499 39683640 -5223930 - L1MC4a LINE L1 -860 5484 5335 1374 202 118 0 chr21 39684117 39684439 -5223131 - L1MB3 LINE L1 0 6183 5824 1259 137 83 5 chr21 39684446 39684650 -5222920 - AluSg/x SINE Alu -15 297 78 2316 102 3 0 chr21 39685955 39686249 -5221321 + AluSx SINE Alu 1 295 -17 229 271 64 57 chr21 39686639 39686779 -5220791 + L3 LINE CR1 1346 1486 -91 2413 104 30 0 chr21 39687784 39688150 -5219420 + MER51B LTR ERV1 1 377 0 1015 138 12 6 chr21 39688386 39688546 -5219024 + THE1B LTR MaLR 204 364 0 11453 90 4 8 chr21 39688546 39688711 -5218859 + THE1B-int LTR MaLR 1 165 -1415 1950 151 3 16 chr21 39688711 39689015 -5218555 - AluSx SINE Alu -12 300 1 11453 90 4 8 chr21 39689015 39690435 -5217135 + THE1B-int LTR MaLR 165 1580 0 2237 111 25 25 chr21 39690435 39690797 -5216773 + THE1B LTR MaLR 1 362 -2 194 222 127 16 chr21 39690900 39690963 -5216607 + MER5A DNA MER1_type 18 87 -102 2406 97 0 0 chr21 39693547 39693846 -5213724 + AluSx SINE Alu 1 299 -13 346 333 133 38 chr21 39695447 39695973 -5211597 + L2 LINE L2 2265 2840 -474 413 267 99 79 chr21 39696028 39696320 -5211250 + L2 LINE L2 3006 3303 -10 380 333 16 8 chr21 39696921 39697050 -5210520 - MIR SINE MIR -61 147 18 820 230 73 0 chr21 39697801 39698005 -5209565 + MER20 DNA MER1_type 1 219 0 212 241 37 0 chr21 39698764 39698818 -5208752 + L2 LINE L2 3253 3308 -5 282 360 53 7 chr21 39699050 39699200 -5208370 - MIR SINE MIR -75 187 31 267 284 73 9 chr21 39699614 39699723 -5207847 - MIR SINE MIR -63 199 84 353 250 6 0 chr21 39700349 39700505 -5207065 + (TGAG)n Simple_repeat Simple_repeat 4 160 0 540 244 10 0 chr21 39700517 39700922 -5206648 + (TGAG)n Simple_repeat Simple_repeat 1 409 0 623 218 6 0 chr21 39700954 39701606 -5205964 + (TGAG)n Simple_repeat Simple_repeat 1 656 0 335 229 18 6 chr21 39701620 39701786 -5205784 + (TGAG)n Simple_repeat Simple_repeat 4 171 0 401 244 6 0 chr21 39701841 39702017 -5205553 + (TGAG)n Simple_repeat Simple_repeat 4 180 0 339 249 18 0 chr21 39702040 39702209 -5205361 + (TGAG)n Simple_repeat Simple_repeat 1 172 0 328 215 32 0 chr21 39702246 39702404 -5205166 + (TGAG)n Simple_repeat Simple_repeat 2 164 0 267 0 0 0 chr21 39703480 39703512 -5204058 + MIR SINE MIR 83 114 -148 1640 228 110 19 chr21 39703805 39704332 -5203238 + MER90 LTR ERV1 1 575 0 266 254 0 0 chr21 39705382 39705441 -5202129 + MER81 DNA DNA 55 113 -1 187 289 0 53 chr21 39706606 39706682 -5200888 + L2 LINE L2 2684 2755 -559 2266 117 3 0 chr21 39707274 39707581 -5199989 - AluSx SINE Alu -4 308 1 1546 192 52 112 chr21 39707730 39708302 -5199268 + L1MB7 LINE L1 5647 6184 0 275 107 187 0 chr21 39708338 39708413 -5199157 + L1MB7 LINE L1 6096 6184 0 2056 125 7 0 chr21 39708424 39708725 -5198845 + AluSx SINE Alu 1 303 0 2146 198 65 42 chr21 39709347 39709918 -5197652 + L1MC2 LINE L1 5760 6343 -1 2008 83 60 46 chr21 39709937 39710239 -5197331 - AluSp SINE Alu -7 306 1 25 0 0 0 chr21 39710410 39710435 -5197135 + AT_rich Low_complexity Low_complexity 1 25 0 980 166 24 97 chr21 39710442 39710492 -5197078 - L1MA9 LINE L1 0 6312 6260 1571 148 72 32 chr21 39710492 39710770 -5196800 + AluJb SINE Alu 1 289 -23 980 166 24 97 chr21 39710770 39710966 -5196604 - L1MA9 LINE L1 -52 6260 6084 418 304 185 4 chr21 39711322 39711549 -5196021 + L1MC4a LINE L1 5596 5863 -1945 330 26 0 0 chr21 39711723 39711762 -5195808 + (TG)n Simple_repeat Simple_repeat 2 40 0 2082 157 0 3 chr21 39712010 39712323 -5195247 + AluJb SINE Alu 1 312 0 2515 64 0 0 chr21 39712947 39713242 -5194328 - AluSg SINE Alu -15 295 1 4158 187 17 11 chr21 39713454 39714322 -5193248 + L1MA8 LINE L1 5417 6289 -2 2155 116 25 0 chr21 39714450 39714735 -5192835 - AluSx SINE Alu -20 292 1 2119 126 0 11 chr21 39715276 39715583 -5191987 - AluSx SINE Alu 0 304 1 2323 98 7 3 chr21 39716509 39716804 -5190766 + AluSx SINE Alu 2 297 -15 480 214 185 51 chr21 39716999 39717177 -5190393 - MER3 DNA MER1_type -5 204 3 366 251 117 86 chr21 39717693 39717794 -5189776 - MER5A DNA MER1_type -7 182 73 2064 129 37 0 chr21 39717794 39718089 -5189481 - AluJb SINE Alu -6 306 1 366 251 117 86 chr21 39718089 39718150 -5189420 - MER5A DNA MER1_type -116 73 15 2046 101 8 8 chr21 39718582 39718870 -5188700 + AluSx SINE Alu 28 312 0 776 206 57 10 chr21 39719601 39719810 -5187760 - MER20 DNA MER1_type 0 219 1 2342 111 0 0 chr21 39721432 39721739 -5185831 + AluSc SINE Alu 1 307 -2 2217 117 0 7 chr21 39721983 39722283 -5185287 + AluSq SINE Alu 1 298 -15 23 0 0 0 chr21 39722547 39722570 -5185000 + AT_rich Low_complexity Low_complexity 1 23 0 293 326 48 40 chr21 39722943 39723170 -5184400 - L1MC/D LINE L1 -2001 5807 5579 2478 87 3 0 chr21 39723470 39723780 -5183790 - AluSp SINE Alu -2 311 1 2678 133 21 19 chr21 39725978 39726461 -5181109 + MER31A LTR ERV1 2 485 0 652 278 99 0 chr21 39726723 39726946 -5180624 + MIR SINE MIR 13 257 -5 2428 107 0 0 chr21 39727967 39728277 -5179293 + AluSx SINE Alu 1 310 -2 365 259 22 36 chr21 39729607 39729746 -5177824 + L1 LINE L1 4253 4389 -1757 334 208 158 0 chr21 39730010 39730111 -5177459 + MIR SINE MIR 131 247 -15 530 397 13 16 chr21 39730136 39730448 -5177122 + L3 LINE CR1 1247 1557 -20 207 130 65 22 chr21 39731872 39731918 -5175652 - MER5B DNA MER1_type -47 131 84 342 250 21 35 chr21 39732511 39732700 -5174870 + MIR SINE MIR 23 262 0 209 213 25 50 chr21 39734733 39734813 -5172757 + C-rich Low_complexity Low_complexity 6 83 0 26 0 0 0 chr21 39734879 39734905 -5172665 + GC_rich Low_complexity Low_complexity 1 26 0 920 204 80 40 chr21 39735503 39735753 -5171817 + MER34C LTR ERV1 7 266 -319 1870 149 17 7 chr21 39735899 39736201 -5171369 - AluJo SINE Alu -1 311 7 346 243 81 92 chr21 39736207 39736380 -5171190 + MER34 LTR ERV1 380 542 0 295 127 0 0 chr21 39736845 39736900 -5170670 - MLT2B1 LTR ERVL -2 518 464 328 264 66 11 chr21 39736901 39736992 -5170578 - L1MC4 LINE L1 -1339 6703 6608 242 163 54 43 chr21 39736992 39737084 -5170486 + (TA)n Simple_repeat Simple_repeat 1 93 0 2035 186 73 20 chr21 39737084 39737535 -5170035 - MLT2B1 LTR ERVL -41 479 5 1652 194 4 11 chr21 39737535 39737814 -5169756 + AluJo SINE Alu 1 277 -35 28319 157 25 9 chr21 39737842 39739491 -5168079 - ERVL-B1 LTR ERVL 0 5764 4142 1767 122 4 4 chr21 39739491 39739738 -5167832 - AluSx SINE Alu -12 300 54 28319 157 25 9 chr21 39739738 39739769 -5167801 - ERVL-B1 LTR ERVL -1622 4142 4113 2333 112 0 0 chr21 39739769 39740064 -5167506 + AluSg SINE Alu 1 295 -15 28319 157 25 9 chr21 39740064 39743228 -5164342 - ERVL-B1 LTR ERVL -1651 4113 845 499 292 31 33 chr21 39743300 39743659 -5163911 + L1MEd LINE L1 1280 1672 -4864 1089 161 6 0 chr21 39743665 39743839 -5163731 + AluSq SINE Alu 137 311 -2 255 265 87 52 chr21 39743870 39743934 -5163636 + L1MEd LINE L1 1560 1620 -4987 2052 125 3 3 chr21 39743934 39744230 -5163340 - AluSg SINE Alu -14 296 1 255 265 87 52 chr21 39744230 39744429 -5163141 + L1MEd LINE L1 1620 2027 -4580 348 264 55 0 chr21 39744626 39744717 -5162853 - L1MC4 LINE L1 -1339 6703 6608 872 232 174 26 chr21 39744790 39745100 -5162470 + MLT2F LTR ERVL 254 609 -54 342 45 0 0 chr21 39745104 39745148 -5162422 + (CA)n Simple_repeat Simple_repeat 2 45 0 1771 122 29 44 chr21 39745186 39745530 -5162040 + L1MB3 LINE L1 5838 6176 -7 482 309 80 63 chr21 39745535 39746059 -5161511 + L1ME3A LINE L1 5436 5968 -202 2210 121 0 7 chr21 39746229 39746527 -5161043 + AluSq SINE Alu 1 296 -17 1663 157 126 14 chr21 39746875 39747231 -5160339 - MSTD LTR MaLR 0 396 1 252 287 19 62 chr21 39747469 39747599 -5159971 - MIR SINE MIR -60 148 41 2258 148 89 7 chr21 39748722 39749160 -5158410 - MER31A LTR ERV1 -7 478 5 4271 71 6 0 chr21 39749169 39749715 -5157855 - L1PA10 LINE L1 -4 6164 5616 2608 49 16 0 chr21 39750750 39751056 -5156514 - AluY SINE Alu 0 311 1 2516 63 0 3 chr21 39751159 39751462 -5156108 + AluY SINE Alu 1 302 -9 225 240 0 0 chr21 39752070 39752120 -5155450 + L1MC4 LINE L1 6653 6702 -1340 218 167 0 15 chr21 39752129 39752195 -5155375 + (TA)n Simple_repeat Simple_repeat 2 66 0 2151 120 10 3 chr21 39752291 39752590 -5154980 + AluSx SINE Alu 1 301 -11 561 274 85 36 chr21 39752597 39752904 -5154666 + MER110A LTR ERV1 1 322 -146 239 352 72 16 chr21 39753785 39753910 -5153660 + MIR SINE MIR 76 207 -55 541 320 17 6 chr21 39754030 39754211 -5153359 + MER91B DNA MER1_type 2 184 -6 364 252 94 0 chr21 39754446 39754573 -5152997 + Charlie8 DNA MER1_type 45 183 -2234 2477 100 0 0 chr21 39754841 39755152 -5152418 + AluSx SINE Alu 2 312 0 230 314 165 25 chr21 39755492 39755613 -5151957 - L2 LINE L2 -501 2813 2676 1091 69 23 0 chr21 39755615 39755746 -5151824 - AluSq/x SINE Alu -178 134 1 586 294 179 10 chr21 39755857 39756242 -5151328 - L2 LINE L2 -800 2514 2065 22 35 0 0 chr21 39756997 39757026 -5150544 + AT_rich Low_complexity Low_complexity 1 29 0 339 85 0 0 chr21 39757461 39757508 -5150062 + (TG)n Simple_repeat Simple_repeat 2 48 0 181 308 0 110 chr21 39757531 39757622 -5149948 + MER5B DNA MER1_type 1 81 -97 4803 123 25 47 chr21 39757984 39758265 -5149305 - MER4E LTR ERV1 0 779 494 2407 87 3 0 chr21 39758265 39758563 -5149007 - AluSp SINE Alu -14 299 1 4803 123 25 47 chr21 39758563 39759077 -5148493 - MER4E LTR ERV1 -285 494 1 207 0 0 0 chr21 39759637 39759660 -5147910 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1928 156 3 0 chr21 39759700 39760016 -5147554 - AluSx SINE Alu 0 317 1 25 0 0 0 chr21 39760038 39760063 -5147507 + AT_rich Low_complexity Low_complexity 1 25 0 301 386 24 0 chr21 39760799 39760926 -5146644 + MIR SINE MIR 15 144 -118 2084 122 3 38 chr21 39761274 39761593 -5145977 - AluJo SINE Alu -4 308 1 2019 122 22 0 chr21 39761617 39761915 -5145655 + AluSx SINE Alu 1 304 0 907 250 82 12 chr21 39763673 39764013 -5143557 - MER69 DNA AcHobo -1 2525 2162 474 288 113 35 chr21 39764012 39764412 -5143158 - MER69 DNA AcHobo -679 547 117 * 571 290 98 42 chr21 39764827 39765162 -5142408 - L2 LINE L2 -883 2431 2078 1826 167 33 0 chr21 39765167 39765527 -5142043 + MLT1B LTR MaLR 6 377 -13 187 329 57 29 chr21 39765826 39765896 -5141674 + L3 LINE CR1 423 494 -1083 1256 101 6 0 chr21 39766597 39766765 -5140805 + AluSc SINE Alu 132 300 -9 403 188 0 0 chr21 39766767 39766836 -5140734 - FLAM_A SINE Alu -27 115 47 1117 75 0 0 chr21 39766847 39766980 -5140590 - AluSc SINE Alu -176 133 1 846 188 0 0 chr21 39766982 39767115 -5140455 - AluJo/FLAM SINE Alu -179 133 1 611 252 13 0 chr21 39767853 39768004 -5139566 - MER69A DNA AcHobo -17 160 8 439 336 92 53 chr21 39768171 39768547 -5139023 + HAL1 LINE L1 1339 1738 -769 2341 105 3 0 chr21 39768547 39768852 -5138718 + AluSx SINE Alu 1 306 -6 439 336 92 53 chr21 39768852 39768945 -5138625 + HAL1 LINE L1 1738 1826 -681 1853 213 93 32 chr21 39768959 39769434 -5138136 + MLT1D LTR MaLR 2 505 0 2516 90 3 0 chr21 39769665 39769977 -5137593 - AluSq SINE Alu 0 313 1 315 288 129 46 chr21 39769986 39770226 -5137344 + L1MEc LINE L1 2007 2266 -4130 277 222 0 0 chr21 39770232 39770295 -5137275 + L1MEc LINE L1 2244 2306 -3909 1159 201 57 113 chr21 39770378 39770735 -5136835 + MER39 LTR ERV1 6 524 -183 1603 177 13 39 chr21 39770735 39771046 -5136524 + AluJo SINE Alu 1 303 -9 1159 201 57 113 chr21 39771046 39771219 -5136351 + MER39 LTR ERV1 524 705 -2 365 279 123 67 chr21 39771362 39772031 -5135539 + L1MEc LINE L1 3186 3891 -2324 237 33 0 0 chr21 39772106 39772136 -5135434 + (CAAG)n Simple_repeat Simple_repeat 3 32 0 378 117 33 0 chr21 39772146 39772206 -5135364 + GA-rich Low_complexity Low_complexity 1 62 0 749 102 16 53 chr21 39772206 39772393 -5135177 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 608 161 29 29 chr21 39772405 39772579 -5134991 + GA-rich Low_complexity Low_complexity 5 178 0 2397 138 15 13 chr21 39772589 39772986 -5134584 + MER57A LTR ERV1 2 399 -4 626 300 171 15 chr21 39772990 39773576 -5133994 + L1MEc LINE L1 4226 4902 -1313 224 265 88 39 chr21 39774138 39774191 -5133379 - MIR SINE MIR -115 147 98 1802 174 10 3 chr21 39774191 39774485 -5133085 - AluSx SINE Alu -16 296 1 224 265 88 39 chr21 39774485 39774533 -5133037 - MIR SINE MIR -164 98 41 258 282 48 10 chr21 39775094 39775197 -5132373 + Charlie2 DNA MER1_type 1877 1983 -879 445 250 103 7 chr21 39775230 39775366 -5132204 - MIR SINE MIR -77 185 37 316 275 159 26 chr21 39775372 39775561 -5132009 + Charlie2 DNA MER1_type 2009 2222 -640 350 268 93 57 chr21 39775708 39775954 -5131616 - MER110A LTR ERV1 -67 401 147 360 200 0 0 chr21 39776051 39776171 -5131399 + (TG)n Simple_repeat Simple_repeat 1 120 0 242 237 79 0 chr21 39776426 39776502 -5131068 - MER92B LTR ERV1 -10 626 545 234 178 22 0 chr21 39776657 39776702 -5130868 - MER92B LTR ERV1 -46 590 545 234 178 22 0 chr21 39776725 39776770 -5130800 - MER92B LTR ERV1 -46 590 545 2384 90 0 10 chr21 39777123 39777435 -5130135 - AluY SINE Alu -2 309 1 1641 217 149 4 chr21 39777575 39778046 -5129524 - MER92B LTR ERV1 -97 539 1 828 281 73 0 chr21 39778052 39778394 -5129176 + Charlie2 DNA MER1_type 2496 2862 0 215 185 148 0 chr21 39778610 39778664 -5128906 + MER5B DNA MER1_type 94 155 -23 2947 120 9 0 chr21 39778746 39779172 -5128398 - L1PA15 LINE L1 -2 6163 5734 2393 87 71 8 chr21 39779172 39779538 -5128032 + L1PA15 LINE L1 5338 5726 -439 2244 85 0 26 chr21 39779915 39780220 -5127350 + AluSc SINE Alu 1 297 -12 2995 9 0 0 chr21 39780789 39781107 -5126463 - AluYb8 SINE Alu 0 318 1 608 96 0 0 chr21 39781166 39781249 -5126321 - AluSg/x SINE Alu -15 297 215 2021 134 4 4 chr21 39782756 39783062 -5124508 + AluSx SINE Alu 8 313 0 301 252 34 17 chr21 39783617 39783736 -5123834 + MLT1L LTR MaLR 147 267 -348 298 294 39 10 chr21 39784153 39784255 -5123315 - LTR33 LTR ERVL -300 221 117 357 294 88 31 chr21 39785080 39785562 -5122008 + L1MEd LINE L1 913 1509 -981 555 121 0 12 chr21 39785565 39785691 -5121879 + FLAM_A SINE Alu 33 157 0 257 263 53 0 chr21 39785714 39785828 -5121742 + HAL1 LINE L1 1550 1669 -838 393 206 262 7 chr21 39785857 39785998 -5121572 + MER5B DNA MER1_type 2 178 0 213 333 125 0 chr21 39786298 39786394 -5121176 - MER5B DNA MER1_type -70 108 1 453 322 40 11 chr21 39787301 39787475 -5120095 - MER5A DNA MER1_type 0 189 11 353 197 145 92 chr21 39787819 39787971 -5119599 - MIR3 SINE MIR -34 174 15 462 18 0 0 chr21 39788264 39788319 -5119251 + (CA)n Simple_repeat Simple_repeat 1 55 0 2015 147 0 10 chr21 39790697 39791019 -5116551 + AluSx SINE Alu 1 312 0 233 284 71 55 chr21 39791078 39791205 -5116365 + MIR SINE MIR 2 130 -132 2026 120 7 13 chr21 39791227 39791527 -5116043 + AluJb SINE Alu 1 298 -14 1535 159 60 33 chr21 39792353 39792654 -5114916 + AluSx SINE Alu 1 309 -3 2026 82 4 50 chr21 39792654 39792934 -5114636 + AluSp SINE Alu 32 298 -15 274 295 36 29 chr21 39793129 39793268 -5114302 + L2 LINE L2 2920 3059 -213 359 375 13 7 chr21 39793443 39793595 -5113975 - MIR SINE MIR -43 219 67 1335 72 0 0 chr21 39794009 39794189 -5113381 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 202 342 137 19 chr21 39795540 39795701 -5111869 - MIR SINE MIR -33 229 50 512 217 194 0 chr21 39796007 39796182 -5111388 + L1M4 LINE L1 4908 5116 -1030 1332 149 63 22 chr21 39796214 39796436 -5111134 + AluJo SINE Alu 1 231 -81 272 26 0 26 chr21 39826627 39826665 -5080905 + (CATCC)n Simple_repeat Simple_repeat 1 37 0 7494 126 49 3 chr21 39826668 39828590 -5078980 - L1PBa LINE L1 -3160 3702 1689 1848 205 63 29 chr21 39828607 39829051 -5078519 + LTR2B LTR ERV1 32 490 0 2645 122 15 13 chr21 39829051 39829974 -5077596 - L1PBa LINE L1 -5169 1694 621 1143 158 5 0 chr21 39829962 39830158 -5077412 - L1PBa LINE L1 -6663 200 4 * 2129 139 21 17 chr21 39830180 39830582 -5076988 - MLT2A2 LTR ERVL -144 309 1 569 253 32 51 chr21 39830613 39830725 -5076845 + L1MC5 LINE L1 6966 7079 -906 2451 90 0 0 chr21 39830725 39831025 -5076545 + AluY SINE Alu 1 300 -11 569 253 32 51 chr21 39831025 39831206 -5076364 + L1MC5 LINE L1 7079 7252 -733 529 321 48 8 chr21 39831245 39831513 -5076057 + L1MC5 LINE L1 7251 7529 -432 1095 159 10 35 chr21 39831513 39831714 -5075856 - AluJb SINE Alu -116 196 1 2197 118 7 0 chr21 39831719 39832015 -5075555 - AluY SINE Alu -13 298 1 229 289 83 56 chr21 39832266 39832446 -5075124 - L1ME LINE L1 -302 5819 5635 2322 112 3 0 chr21 39832461 39832766 -5074804 - AluSq SINE Alu -7 306 1 1495 224 21 17 chr21 39834501 39834864 -5072706 - MER39 LTR ERV1 -2 690 340 484 244 71 16 chr21 39834864 39834991 -5072579 - MER39 LTR ERV1 -573 134 1 1884 89 4 0 chr21 39835058 39835328 -5072242 + L1PA8 LINE L1 5895 6165 -7 2411 90 3 0 chr21 39835331 39835630 -5071940 + AluSp SINE Alu 2 301 -12 2863 23 0 3 chr21 39835773 39836121 -5071449 + L1PA2 LINE L1 5809 6155 0 1151 265 99 19 chr21 39836529 39836955 -5070615 + MLT1C LTR MaLR 7 466 -1 2208 116 18 6 chr21 39837033 39837360 -5070210 - THE1B LTR MaLR -9 355 25 301 282 9 18 chr21 39837872 39837982 -5069588 + (TG)n Simple_repeat Simple_repeat 2 110 0 1504 242 77 35 chr21 39838525 39839004 -5068566 + MLT1D LTR MaLR 7 505 0 2215 110 22 25 chr21 39839532 39839897 -5067673 + THE1B LTR MaLR 1 364 0 748 306 124 37 chr21 39840415 39840849 -5066721 + MLT1E LTR MaLR 11 482 -111 1014 135 112 12 chr21 39840852 39841022 -5066548 + AluJo SINE Alu 1 187 -125 246 265 36 0 chr21 39841052 39841135 -5066435 - MER45A DNA AcHobo -48 130 45 273 340 20 33 chr21 39841787 39841937 -5065633 + MIR3 SINE MIR 34 181 -27 734 212 31 28 chr21 39842289 39842505 -5065065 + MIR SINE MIR 34 251 -11 2366 113 0 0 chr21 39844130 39844440 -5063130 - AluSx SINE Alu -2 310 1 1165 11 11 58 chr21 39844447 39844636 -5062934 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 240 314 47 0 chr21 39844663 39844749 -5062821 - U13 snRNA snRNA 0 104 15 314 291 8 43 chr21 39844912 39845029 -5062541 - MER45A DNA AcHobo 0 178 66 246 130 93 0 chr21 39845278 39845332 -5062238 - MADE1 DNA Mariner 0 80 22 290 244 176 23 chr21 39845377 39845508 -5062062 - MIR SINE MIR -87 175 25 616 250 108 8 chr21 39846195 39846435 -5061135 + MLT1C LTR MaLR 1 264 -203 2195 135 0 0 chr21 39846491 39846803 -5060767 + AluSx SINE Alu 1 312 0 1188 261 69 35 chr21 39847208 39847660 -5059910 + MLT1C LTR MaLR 1 467 0 2196 92 3 34 chr21 39847819 39848114 -5059456 + AluY SINE Alu 13 298 -13 2514 106 42 0 chr21 39848361 39848765 -5058805 - MSTA LTR MaLR -7 421 1 1023 243 18 4 chr21 39849139 39849374 -5058196 + MER33 DNA MER1_type 1 242 -2343 2179 128 0 10 chr21 39849374 39849679 -5057891 - AluSx SINE Alu -10 302 1 1023 243 18 4 chr21 39849679 39849715 -5057855 + MER33 DNA MER1_type 242 276 -48 2268 97 10 7 chr21 39850956 39851266 -5056304 + AluSq SINE Alu 1 311 -2 244 294 83 28 chr21 39853495 39853604 -5053966 - L2 LINE L2 0 3272 3158 866 260 136 50 chr21 39854256 39854721 -5052849 + MLT1D LTR MaLR 1 505 0 481 259 18 0 chr21 39855010 39855122 -5052448 - MLT1D LTR MaLR -388 117 4 853 275 57 75 chr21 39855125 39855233 -5052337 - L1MC4a LINE L1 -1972 5836 5728 1494 172 7 70 chr21 39855233 39855535 -5052035 + AluJo SINE Alu 14 296 -16 853 275 57 75 chr21 39855535 39855811 -5051759 - L1MC4a LINE L1 -2080 5728 5459 858 181 19 12 chr21 39857168 39857350 -5050220 - FRAM SINE Alu 0 40 1 276 137 0 0 chr21 39858070 39858121 -5049449 + (CA)n Simple_repeat Simple_repeat 2 52 0 2146 121 16 10 chr21 39858160 39858466 -5049104 + AluSx SINE Alu 1 308 -4 1399 197 10 68 chr21 39858613 39858792 -5048778 + MLT1A2 LTR MaLR 12 159 -215 204 40 0 0 chr21 39858792 39858817 -5048753 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1399 197 10 68 chr21 39858817 39859022 -5048548 + MLT1A2 LTR MaLR 159 374 0 305 347 69 34 chr21 39859022 39859162 -5048408 + L1MC4a LINE L1 5542 5676 -2132 297 0 0 0 chr21 39859162 39859195 -5048375 + (TG)n Simple_repeat Simple_repeat 2 34 0 305 347 69 34 chr21 39859195 39859374 -5048196 + L1MC4a LINE L1 5676 5872 -1936 2257 123 34 17 chr21 39859535 39859893 -5047677 + THE1B LTR MaLR 1 364 0 278 301 21 0 chr21 39859943 39860036 -5047534 - L2 LINE L2 -39 3274 3180 314 254 59 17 chr21 39860303 39860421 -5047149 - L2 LINE L2 -251 3062 2940 2044 133 20 3 chr21 39861313 39861606 -5045964 + AluSx SINE Alu 1 298 -14 980 222 66 122 chr21 39862296 39862764 -5044806 - MLT1C LTR MaLR -18 449 8 331 340 48 39 chr21 39863337 39863543 -5044027 + MIR SINE MIR 40 247 -15 904 209 55 41 chr21 39864165 39864385 -5043185 + MER58A DNA MER1_type 2 224 0 937 178 55 43 chr21 39864422 39864463 -5043107 - L1MC2 LINE L1 0 6344 6305 2779 59 3 0 chr21 39864463 39864817 -5042753 - THE1A LTR MaLR 0 355 1 937 178 55 43 chr21 39864817 39865028 -5042542 - L1MC2 LINE L1 -39 6305 6089 408 221 0 0 chr21 39865324 39865410 -5042160 - AluSp/q SINE Alu 0 303 218 194 228 140 35 chr21 39865678 39865792 -5041778 - L2 LINE L2 -213 3059 2934 343 322 0 0 chr21 39866070 39866157 -5041413 + polypurine Low_complexity Low_complexity 2 88 0 1559 216 74 11 chr21 39866840 39867205 -5040365 + MER6A DNA MER2_type 1 388 -217 388 153 0 0 chr21 39867205 39867277 -5040293 - L1MA5A LINE L1 -5 6292 6221 2149 128 0 0 chr21 39867329 39867617 -5039953 - AluSx SINE Alu -24 288 1 2662 135 8 102 chr21 39867683 39867940 -5039630 - L1MA5A LINE L1 -74 6223 6052 2447 99 0 0 chr21 39867940 39868243 -5039327 - AluSp SINE Alu -10 303 1 2662 135 8 102 chr21 39868243 39868585 -5038985 - L1MA5A LINE L1 -245 6052 5680 1948 197 4 19 chr21 39868564 39869041 -5038529 + L1 LINE L1 4922 5391 -755 * 2083 105 51 35 chr21 39869068 39869440 -5038130 - MER83B LTR ERV1 0 378 1 1726 156 44 0 chr21 39869440 39869760 -5037810 - L1MA5A LINE L1 -1253 4893 4560 457 128 32 0 chr21 39869761 39869855 -5037715 + MER6A DNA MER2_type 359 455 -150 1643 174 68 3 chr21 39869855 39870148 -5037422 + AluJb SINE Alu 1 312 0 923 176 6 0 chr21 39870170 39870329 -5037241 + MER6A DNA MER2_type 446 605 0 1438 236 50 23 chr21 39871235 39871676 -5035894 - MLT1C LTR MaLR -7 460 8 400 231 75 8 chr21 39872593 39872727 -5034843 - MER69 DNA AcHobo 0 2526 2384 373 168 46 29 chr21 39873733 39873906 -5033664 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 416 167 58 0 chr21 39873956 39874094 -5033476 + (TCCA)n Simple_repeat Simple_repeat 3 148 0 212 348 65 0 chr21 39875028 39875120 -5032450 + MIR SINE MIR 54 151 -57 671 159 19 6 chr21 39875776 39875933 -5031637 + (TCCA)n Simple_repeat Simple_repeat 2 160 0 495 206 19 0 chr21 39875944 39876099 -5031471 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 783 152 18 13 chr21 39876111 39876338 -5031232 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 313 273 91 55 chr21 39876874 39877039 -5030531 + MER5A DNA MER1_type 14 184 -5 243 212 35 18 chr21 39877585 39877634 -5029936 + CT-rich Low_complexity Low_complexity 2 49 -67 2240 125 3 0 chr21 39877634 39877945 -5029625 - AluSx SINE Alu 0 312 1 243 212 35 18 chr21 39877945 39878008 -5029562 + CT-rich Low_complexity Low_complexity 49 116 0 692 269 178 26 chr21 39878008 39878391 -5029179 - L2 LINE L2 -1 3312 2872 659 243 60 97 chr21 39878410 39878863 -5028707 - MLT1H LTR MaLR -23 526 50 763 94 9 0 chr21 39878876 39878982 -5028588 - LTR47A LTR ERVL 0 452 346 985 145 0 0 chr21 39878994 39879139 -5028431 - FRAM SINE Alu -22 154 10 1290 172 95 60 chr21 39879148 39879496 -5028074 - LTR47A LTR ERVL -91 361 2 252 239 23 23 chr21 39879538 39879626 -5027944 + MER5A DNA MER1_type 26 113 -76 411 271 203 21 chr21 39879687 39879968 -5027602 - L2 LINE L2 -504 2810 2479 236 298 93 52 chr21 39880130 39880378 -5027192 - L2 LINE L2 -868 2446 2189 2427 108 0 3 chr21 39880386 39880700 -5026870 - AluSq SINE Alu 0 313 1 307 252 113 0 chr21 39880805 39880920 -5026650 - LTR37B LTR ERV1 -11 457 330 682 220 0 0 chr21 39882984 39883116 -5024454 + FLAM_C SINE Alu 1 132 -1 1435 181 4 26 chr21 39883154 39883420 -5024150 + AluJb SINE Alu 21 280 -32 1301 218 29 4 chr21 39883429 39883770 -5023800 + L1ME1 LINE L1 5451 5799 -365 402 290 22 0 chr21 39883765 39883903 -5023667 + L1MA10 LINE L1 6190 6330 -4 * 440 228 125 4 chr21 39883920 39884086 -5023484 + L1ME1 LINE L1 5969 6161 -5 424 234 8 44 chr21 39884213 39884348 -5023222 - L1MC/D LINE L1 -499 5665 5543 1839 166 36 7 chr21 39884420 39884721 -5022849 - AluJb SINE Alu -2 310 1 1316 258 78 10 chr21 39884976 39885488 -5022082 + MER114 LTR ERV 101 647 -1 2226 103 3 0 chr21 39885846 39886137 -5021433 - AluSx SINE Alu -20 292 1 2133 119 34 0 chr21 39886325 39886620 -5020950 - AluSp SINE Alu -8 305 1 26 30 0 0 chr21 39886628 39886661 -5020909 + AT_rich Low_complexity Low_complexity 1 33 0 1870 160 3 7 chr21 39887347 39887640 -5019930 + AluJb SINE Alu 1 292 -20 1898 149 10 17 chr21 39889093 39889395 -5018175 + AluJb SINE Alu 1 300 -12 304 321 18 27 chr21 39889452 39889564 -5018006 + L1MC/D LINE L1 5719 5829 -1979 2388 96 0 7 chr21 39889883 39890186 -5017384 - AluSq SINE Alu -12 301 1 604 200 22 12 chr21 39890958 39891113 -5016457 + MER45A DNA AcHobo 13 167 -11 253 231 3 77 chr21 39891895 39892034 -5015536 - MIR SINE MIR -1 207 77 566 207 0 9 chr21 39892353 39892469 -5015101 - L1MB8 LINE L1 -6 6172 6058 2980 161 4 2 chr21 39892488 39892997 -5014573 - L1PA15 LINE L1 -2 6163 5654 2482 96 0 3 chr21 39893014 39893328 -5014242 - AluSq SINE Alu 0 313 1 1320 192 38 21 chr21 39893356 39893647 -5013923 - L1MB7 LINE L1 -110 6074 5779 1556 345 33 13 chr21 39893658 39894454 -5013116 - HERV16 LTR ERVL -1900 3096 2550 1975 138 39 33 chr21 39894602 39894964 -5012606 - THE1B LTR MaLR 0 364 1 2161 92 3 7 chr21 39895059 39895381 -5012189 + AluY SINE Alu 1 321 0 1687 199 25 5 chr21 39895624 39896017 -5011553 - L1MB3 LINE L1 -2 6181 5781 279 0 0 0 chr21 39896017 39896048 -5011522 + (CA)n Simple_repeat Simple_repeat 1 31 0 24 77 0 0 chr21 39896510 39896562 -5011008 + AT_rich Low_complexity Low_complexity 1 52 0 737 143 54 0 chr21 39896562 39896674 -5010896 - FLAM_C SINE Alu -15 118 1 953 301 44 16 chr21 39896700 39897086 -5010484 - MLT2C1 LTR ERVL 0 397 1 589 353 69 4 chr21 39897091 39897647 -5009923 - HERV16 LTR ERVL -3436 1560 945 365 215 11 21 chr21 39897651 39897744 -5009826 - MER34 LTR ERV1 -2 540 449 2269 98 3 10 chr21 39897777 39898082 -5009488 + AluSc SINE Alu 5 307 -2 1419 217 13 19 chr21 39898182 39898238 -5009332 - MLT1A1 LTR MaLR -54 311 256 2165 180 72 7 chr21 39898238 39898693 -5008877 - MER66B LTR ERV1 0 486 2 1419 217 13 19 chr21 39898693 39898949 -5008621 - MLT1A1 LTR MaLR -109 256 1 261 371 16 0 chr21 39899567 39899691 -5007879 - HERV16 LTR ERVL -4327 669 544 848 108 0 8 chr21 39901333 39901453 -5006117 - AluJb SINE Alu -193 119 1 894 179 21 5 chr21 39901581 39901771 -5005799 + L1MB2 LINE L1 5971 6163 -8 414 0 0 0 chr21 39901771 39901817 -5005753 + (TG)n Simple_repeat Simple_repeat 1 46 0 1865 102 0 0 chr21 39901820 39902055 -5005515 - AluSx SINE Alu -36 276 42 415 321 72 36 chr21 39902815 39903120 -5004450 - L2 LINE L2 -1 3312 2997 1869 139 62 34 chr21 39903229 39903581 -5003989 + THE1B LTR MaLR 3 364 0 2200 125 0 0 chr21 39903662 39903959 -5003611 + AluSx SINE Alu 3 299 -13 399 314 43 11 chr21 39905167 39905352 -5002218 - MER58A DNA MER1_type 0 224 34 837 299 43 20 chr21 39907579 39907930 -4999640 - Charlie4a DNA MER1_type -92 416 58 242 164 55 68 chr21 39908919 39908992 -4998578 + MIR SINE MIR 128 199 -63 1451 207 40 17 chr21 39909816 39910164 -4997406 - MLT1B LTR MaLR -34 356 1 917 71 7 32 chr21 39910999 39911154 -4996416 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 209 200 89 100 chr21 39911806 39911896 -4995674 - MIR SINE MIR -131 131 43 211 111 56 14 chr21 39912685 39912757 -4994813 + (CA)n Simple_repeat Simple_repeat 1 75 0 611 96 45 28 chr21 39912772 39912949 -4994621 + (CA)n Simple_repeat Simple_repeat 1 180 0 265 277 121 22 chr21 39913561 39913833 -4993737 + L1MC4 LINE L1 6968 7217 -744 1103 271 72 15 chr21 39914883 39915407 -4992163 - MER114 LTR ERV -4 644 91 1879 166 3 16 chr21 39915660 39915967 -4991603 + AluJb SINE Alu 1 303 -9 342 203 159 7 chr21 39916188 39916264 -4991306 - L1MA10 LINE L1 0 6334 6259 816 239 80 59 chr21 39916264 39916759 -4990811 - L1ME1 LINE L1 -88 6078 5568 1168 73 0 0 chr21 39916759 39916910 -4990660 - AluY SINE Alu 0 311 161 1025 229 43 40 chr21 39916910 39917141 -4990429 - L1ME1 LINE L1 -593 5573 5344 2399 113 0 0 chr21 39917141 39917451 -4990119 - AluSx SINE Alu -2 310 1 1025 229 43 40 chr21 39917451 39917711 -4989859 - L1ME1 LINE L1 -822 5344 5081 936 134 34 20 chr21 39917712 39917861 -4989709 + AluJo SINE Alu 1 151 -161 248 262 133 16 chr21 39918915 39919046 -4988524 + MIR SINE MIR 21 161 -47 704 190 30 60 chr21 39919058 39919258 -4988312 + MLT1H LTR MaLR 1 194 -355 799 128 24 0 chr21 39919776 39919901 -4987669 - FLAM_A SINE Alu -3 130 3 1946 114 0 0 chr21 39919902 39920156 -4987414 - AluY SINE Alu -12 299 46 180 0 0 0 chr21 39920751 39920771 -4986799 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 206 309 118 15 chr21 39920954 39921090 -4986480 + MER5A DNA MER1_type 22 171 -18 * 610 209 74 0 chr21 39920969 39921117 -4986453 - MER5A DNA MER1_type -28 161 3 250 325 17 25 chr21 39921182 39921302 -4986268 + MIR SINE MIR 101 219 -43 337 299 103 0 chr21 39922532 39922649 -4984921 + MIR SINE MIR 21 149 -113 306 214 0 0 chr21 39923477 39923561 -4984009 + (CA)n Simple_repeat Simple_repeat 2 85 0 204 229 14 43 chr21 39924509 39924579 -4982991 + GA-rich Low_complexity Low_complexity 5 72 0 * 237 313 0 0 chr21 39924527 39924594 -4982976 + G-rich Low_complexity Low_complexity 6 72 0 1157 215 115 56 chr21 39924933 39925394 -4982176 - MLT1D LTR MaLR -17 488 1 217 313 75 0 chr21 39926544 39926624 -4980946 + L2 LINE L2 3152 3237 -35 1679 183 36 22 chr21 39926688 39927048 -4980522 + MLT1A1 LTR MaLR 1 365 0 502 262 92 6 chr21 39927462 39927626 -4979944 + MIR SINE MIR 10 187 -75 302 267 117 110 chr21 39927721 39928021 -4979549 - MER46C DNA MER2_type -27 311 10 2138 74 0 0 chr21 39928572 39928829 -4978741 + AluY SINE Alu 44 300 -11 2269 177 33 9 chr21 39929608 39930059 -4977511 - L1MA9 LINE L1 -317 5995 5534 2730 145 40 9 chr21 39930400 39931042 -4976528 - L1MA9 LINE L1 -725 5566 4909 304 227 0 0 chr21 39931043 39931109 -4976461 + MLT1D LTR MaLR 439 504 -1 1392 233 55 0 chr21 39932492 39932836 -4974734 - MER89 LTR ERV1 0 559 197 257 194 178 39 chr21 39932854 39932983 -4974587 - MER34 LTR ERV1 0 542 396 2345 114 0 0 chr21 39932991 39933297 -4974273 + AluSx SINE Alu 1 306 -6 242 234 9 84 chr21 39933551 39933658 -4973912 - MER34B LTR ERV1 -450 115 17 290 273 26 0 chr21 39933703 39933780 -4973790 - MIR SINE MIR -65 143 65 1260 111 0 1 chr21 39933884 39934554 -4973016 + (TCCA)n Simple_repeat Simple_repeat 1 849 0 1034 276 97 7 chr21 39935194 39935625 -4971945 - L1ME4a LINE L1 -265 5856 5387 185 368 46 0 chr21 39935657 39935744 -4971826 + MIR SINE MIR 5 95 -167 328 288 81 31 chr21 39935857 39936017 -4971553 - L1ME4a LINE L1 -788 5358 5191 508 195 237 24 chr21 39936333 39936502 -4971068 - MIR SINE MIR 0 262 58 657 129 0 36 chr21 39936919 39937059 -4970511 + Ricksha DNA DNA 2434 2568 -683 1280 163 60 0 chr21 39937059 39937274 -4970296 - AluJb SINE Alu -1 311 84 3109 138 39 93 chr21 39937274 39937976 -4969594 + Ricksha DNA DNA 2566 3229 -25 279 318 75 50 chr21 39938491 39938692 -4968878 + MIR SINE MIR 49 254 -8 2451 105 60 5 chr21 39938706 39939106 -4968464 - MSTA LTR MaLR 0 428 7 1773 208 62 44 chr21 39940144 39940428 -4967142 - MLT2B2 LTR ERVL -5 510 212 2596 85 3 0 chr21 39940428 39940782 -4966788 + THE1A LTR MaLR 1 355 0 1773 208 62 44 chr21 39940782 39940997 -4966573 - MLT2B2 LTR ERVL -303 212 2 343 318 45 8 chr21 39941226 39941358 -4966212 + MIR SINE MIR 47 183 -79 235 290 16 0 chr21 39941766 39941828 -4965742 - MIR SINE MIR -39 223 161 251 352 57 28 chr21 39941831 39942007 -4965563 - L2 LINE L2 -3 3310 3130 398 204 34 88 chr21 39942086 39942142 -4965428 - MIR SINE MIR -109 153 96 2211 132 56 3 chr21 39942142 39942498 -4965072 - THE1C LTR MaLR 0 375 1 398 204 34 88 chr21 39942498 39942588 -4964982 - MIR SINE MIR -166 96 15 464 228 136 8 chr21 39942593 39942742 -4964828 - MER58C DNA MER1_type -10 205 40 320 258 81 40 chr21 39942775 39942899 -4964671 - MIR SINE MIR -48 214 86 1734 173 7 30 chr21 39943007 39943308 -4964262 + AluJo SINE Alu 1 294 -18 3073 172 21 0 chr21 39943319 39943899 -4963671 + L1MB3 LINE L1 5584 6175 -8 563 283 44 6 chr21 39944633 39944813 -4962757 - MIR SINE MIR 0 262 76 228 100 0 0 chr21 39945166 39945206 -4962364 + (CA)n Simple_repeat Simple_repeat 1 40 0 1206 231 41 62 chr21 39945570 39946037 -4961533 + MLT1C LTR MaLR 11 467 0 1759 274 70 52 chr21 39946721 39947578 -4959992 - HAL1 LINE L1 -27 2480 1609 304 315 54 27 chr21 39947703 39947925 -4959645 - HAL1 LINE L1 -2021 486 259 391 260 98 53 chr21 39948009 39948255 -4959315 - MLT1J LTR MaLR -11 500 244 189 0 0 0 chr21 39948362 39948383 -4959187 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1509 130 4 26 chr21 39948387 39948617 -4958953 - AluJb SINE Alu -30 282 58 2373 228 11 70 chr21 39948619 39948795 -4958775 + L1ME1 LINE L1 5495 5680 -486 2209 136 0 0 chr21 39948795 39949103 -4958467 + AluSx SINE Alu 1 308 -4 2373 228 11 70 chr21 39949103 39949624 -4957946 + L1ME1 LINE L1 5680 6151 -15 1265 170 5 5 chr21 39949675 39949875 -4957695 - AluJo SINE Alu -107 205 6 1147 192 9 22 chr21 39949933 39950162 -4957408 + AluJo SINE Alu 80 305 -7 1262 207 30 101 chr21 39951747 39952250 -4955320 - MLT1C LTR MaLR 0 467 1 216 250 0 0 chr21 39952265 39952332 -4955238 + G-rich Low_complexity Low_complexity 1 67 0 334 289 176 0 chr21 39952797 39952939 -4954631 + MER53 DNA DNA 22 188 -1 349 259 8 53 chr21 39953078 39953147 -4954423 + L1ME4a LINE L1 5974 6036 -85 2170 144 0 0 chr21 39953147 39953459 -4954111 - AluSx SINE Alu 0 312 1 349 259 8 53 chr21 39953459 39953520 -4954050 + L1ME4a LINE L1 6036 6098 -23 3504 67 94 0 chr21 39954561 39955071 -4952499 + LTR6B LTR ERV1 1 558 0 235 343 60 45 chr21 39955192 39955326 -4952244 + MLT1K LTR MaLR 91 226 -362 280 238 88 0 chr21 39955463 39955543 -4952027 + MLT1L LTR MaLR 325 411 -204 915 178 101 141 chr21 39956605 39957003 -4950567 + MLT1D LTR MaLR 123 504 -1 263 313 0 0 chr21 39957176 39957256 -4950314 - MIR3 SINE MIR -23 185 106 970 262 37 55 chr21 39958139 39958407 -4949163 - MLT1C LTR MaLR -92 375 115 2200 139 0 0 chr21 39958407 39958716 -4948854 - AluSx SINE Alu -3 309 1 970 262 37 55 chr21 39958716 39958829 -4948741 - MLT1C LTR MaLR -352 115 1 194 247 78 0 chr21 39958845 39958922 -4948648 - MIR3 SINE MIR -45 163 81 432 220 11 0 chr21 39959182 39959284 -4948286 - MLT1C LTR MaLR -92 384 285 2120 96 0 59 chr21 39959530 39959854 -4947716 + AluSx SINE Alu 7 311 -1 3666 193 45 10 chr21 39960163 39960945 -4946625 - L1MB8 LINE L1 0 6178 5370 586 268 110 0 chr21 39961338 39961502 -4946068 - MLT1E3 LTR MaLR 0 624 443 1427 182 52 23 chr21 39961519 39961817 -4945753 + THE1C LTR MaLR 1 310 -65 2191 102 7 0 chr21 39961817 39962112 -4945458 - AluSx SINE Alu -15 297 1 2216 116 32 71 chr21 39963527 39963600 -4943970 - THE1B LTR MaLR 0 364 290 1818 153 19 25 chr21 39963600 39963914 -4943656 + AluSx SINE Alu 1 312 0 2216 116 32 71 chr21 39963914 39964219 -4943351 - THE1B LTR MaLR -74 290 1 26 0 0 0 chr21 39964948 39964974 -4942596 + AT_rich Low_complexity Low_complexity 1 26 0 355 230 20 40 chr21 39965013 39965086 -4942484 - MER53 DNA DNA 0 189 116 980 130 0 0 chr21 39965086 39965217 -4942353 + FLAM_C SINE Alu 1 131 -2 322 39 39 0 chr21 39965217 39965269 -4942301 + (TA)n Simple_repeat Simple_repeat 2 55 0 355 230 20 40 chr21 39965269 39965342 -4942228 - MER53 DNA DNA -71 118 45 475 178 41 107 chr21 39965362 39965531 -4942039 - MER53 DNA DNA -27 162 5 23 0 0 0 chr21 39966440 39966463 -4941107 + GC_rich Low_complexity Low_complexity 1 23 0 602 194 6 18 chr21 39966521 39966686 -4940884 + CT-rich Low_complexity Low_complexity 3 165 0 225 0 0 0 chr21 39968984 39969009 -4938561 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1630 246 82 13 chr21 39969262 39969738 -4937832 - L1MB5 LINE L1 -8 6166 5658 197 200 46 46 chr21 39969816 39969881 -4937689 - MIR SINE MIR -105 103 39 210 362 0 0 chr21 39970514 39970583 -4936987 + L2 LINE L2 3204 3272 0 331 231 13 0 chr21 39970962 39971040 -4936530 - HAL1 LINE L1 -918 1589 1511 509 259 111 64 chr21 39971045 39971404 -4936166 - HAL1 LINE L1 -6 2501 2126 1532 271 95 74 chr21 39971483 39972551 -4935019 + L1MEd LINE L1 26 1115 -5004 887 252 125 72 chr21 39972541 39973091 -4934479 - HAL1 LINE L1 -917 1590 976 * 252 0 0 0 chr21 39973091 39973119 -4934451 + (CA)n Simple_repeat Simple_repeat 2 29 0 887 252 125 72 chr21 39973119 39973432 -4934138 - HAL1 LINE L1 -1531 976 681 340 266 137 0 chr21 39973737 39973861 -4933709 - MER5C DNA MER1_type -164 160 20 354 247 96 48 chr21 39975724 39975890 -4931680 - MER104 DNA Tc2 0 180 7 324 0 0 0 chr21 39976100 39976136 -4931434 + (TTC)n Simple_repeat Simple_repeat 2 37 0 291 28 0 0 chr21 39976136 39976172 -4931398 + (TTA)n Simple_repeat Simple_repeat 2 37 0 230 300 14 0 chr21 39976392 39976462 -4931108 + GA-rich Low_complexity Low_complexity 2 72 0 1564 238 105 48 chr21 39977988 39978531 -4929039 + L1MC4a LINE L1 6462 7035 -773 1586 217 54 102 chr21 39978534 39979174 -4928396 + L1MC4 LINE L1 6259 8038 -4 865 73 81 0 chr21 39987920 39988044 -4919526 + MER85 DNA T2_type 1 134 -5 344 296 28 0 chr21 39988638 39988746 -4918824 + L1MB2 LINE L1 6054 6164 -7 958 218 17 38 chr21 39988778 39989017 -4918553 + L1MB5 LINE L1 5927 6160 -14 226 227 0 45 chr21 39989042 39989108 -4918462 + L1ME3 LINE L1 6091 6153 -9 196 269 102 46 chr21 39989565 39989673 -4917897 + L2 LINE L2 3157 3270 -2 237 65 0 0 chr21 39989967 39989998 -4917572 + (A)n Simple_repeat Simple_repeat 1 31 0 2108 114 7 0 chr21 39990756 39991055 -4916515 - AluJb SINE Alu -11 301 1 1623 116 8 31 chr21 39992829 39993088 -4914482 + L1PA8 LINE L1 5919 6171 -1 484 252 70 7 chr21 39993190 39993333 -4914237 + MIR SINE MIR 40 191 -71 207 0 0 0 chr21 39993350 39993373 -4914197 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2257 90 3 3 chr21 39997316 39997616 -4909954 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr21 39997774 39997796 -4909774 + AT_rich Low_complexity Low_complexity 1 22 0 2300 92 0 0 chr21 39997796 39998099 -4909471 + AluSg SINE Alu 1 303 -7 189 0 0 0 chr21 39998099 39998120 -4909450 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 315 0 0 0 chr21 39998119 39998154 -4909416 + (GA)n Simple_repeat Simple_repeat 2 36 0 2253 225 96 11 chr21 39998157 39998718 -4908852 - L1MB4 LINE L1 -8 6172 5564 749 270 5 5 chr21 39998720 39998905 -4908665 + MER58A DNA MER1_type 40 224 0 183 353 82 49 chr21 39999066 39999170 -4908400 - MER5A DNA MER1_type -8 181 71 1819 151 27 3 chr21 39999170 39999469 -4908101 - AluSx SINE Alu -6 306 1 183 353 82 49 chr21 39999469 39999486 -4908084 - MER5A DNA MER1_type -118 71 56 695 216 244 0 chr21 40000057 40000233 -4907337 + MER20 DNA MER1_type 1 219 0 349 213 32 0 chr21 40005849 40005943 -4901627 - MER97b DNA MER1_type? -734 319 223 220 167 56 19 chr21 40006877 40006931 -4900639 + (CCCCAG)n Simple_repeat Simple_repeat 1 56 0 761 195 45 155 chr21 40007378 40007803 -4899767 - L1MD1 LINE L1 -13 6229 5852 189 259 86 0 chr21 40008787 40008845 -4898725 - L2 LINE L2 -5 3308 3246 219 319 0 0 chr21 40009460 40009532 -4898038 + G-rich Low_complexity Low_complexity 3 74 0 272 350 100 29 chr21 40010716 40011056 -4896514 + L2 LINE L2 2065 2428 -886 245 318 53 0 chr21 40011115 40011247 -4896323 + MER115 DNA AcHobo 1 139 -554 437 346 33 14 chr21 40011324 40011538 -4896032 + MER115 DNA AcHobo 251 468 -225 396 231 22 0 chr21 40011552 40011643 -4895927 + Zaphod DNA AcHobo 3880 3972 -59 705 291 44 38 chr21 40011822 40012162 -4895408 - MER41E LTR ERV1 -5 507 166 191 233 131 35 chr21 40012710 40012981 -4894589 + L2 LINE L2 2800 3104 -209 502 279 8 0 chr21 40013159 40013281 -4894289 - MER119 DNA MER1_type -16 567 445 1559 187 123 77 chr21 40013281 40013811 -4893759 + L1MB5 LINE L1 5570 6123 -51 559 200 48 16 chr21 40013811 40013936 -4893634 - FLAM_A SINE Alu -4 138 10 230 180 0 0 chr21 40013945 40013995 -4893575 + L1MB5 LINE L1 6113 6162 -12 1349 236 123 14 chr21 40013995 40014411 -4893159 - MER119 DNA MER1_type -119 464 4 893 195 25 85 chr21 40016053 40016173 -4891397 + MLT1C LTR MaLR 5 131 -336 2301 62 0 24 chr21 40016173 40016484 -4891086 + AluY SINE Alu 1 304 0 893 195 25 85 chr21 40016484 40016644 -4890926 + MLT1C LTR MaLR 131 269 -198 546 224 41 31 chr21 40016920 40017111 -4890459 + MLT1C LTR MaLR 295 467 0 903 262 125 42 chr21 40017240 40017648 -4889922 + MLT2B1 LTR ERVL 1 442 -78 488 199 0 6 chr21 40017651 40017812 -4889758 + (CA)n Simple_repeat Simple_repeat 2 161 0 315 104 0 0 chr21 40017812 40017860 -4889710 + MLT2D LTR ERVL 367 414 0 31 44 0 0 chr21 40018242 40018287 -4889283 + GC_rich Low_complexity Low_complexity 1 45 0 370 255 50 81 chr21 40018757 40018918 -4888652 - L1M4 LINE L1 -2915 3231 3076 3006 134 96 51 chr21 40019253 40019844 -4887726 + MER51A LTR ERV1 1 618 -16 22 56 0 0 chr21 40020100 40020136 -4887434 + AT_rich Low_complexity Low_complexity 1 36 0 321 337 43 5 chr21 40020186 40020370 -4887200 + L1MC4a LINE L1 5707 5897 -1911 229 193 59 0 chr21 40020413 40020548 -4887022 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 394 326 82 53 chr21 40020598 40020880 -4886690 + L1MC4a LINE L1 6063 6352 -1456 289 82 0 41 chr21 40020880 40020929 -4886641 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 617 212 0 27 chr21 40020929 40021113 -4886457 + GA-rich Low_complexity Low_complexity 2 180 0 1696 188 23 16 chr21 40021304 40021613 -4885957 + AluJo SINE Alu 1 311 -1 841 257 35 23 chr21 40022057 40022304 -4885266 + L1MA9 LINE L1 6019 6271 -41 2513 79 7 0 chr21 40022304 40022609 -4884961 - AluSq SINE Alu -6 307 1 841 257 35 23 chr21 40022609 40022622 -4884948 + L1MA9 LINE L1 6271 6282 -30 2441 82 0 22 chr21 40023153 40023468 -4884102 - AluSx SINE Alu -4 308 1 25 0 0 0 chr21 40023468 40023493 -4884077 + AT_rich Low_complexity Low_complexity 1 25 0 2551 90 67 38 chr21 40023604 40024025 -4883545 + LTR3b LTR ERVK 1 433 -4 476 263 227 22 chr21 40024330 40024580 -4882990 + HAL1 LINE L1 853 1167 -1340 2211 96 0 57 chr21 40024580 40024912 -4882658 + AluSq SINE Alu 1 313 0 476 263 227 22 chr21 40024912 40024939 -4882631 + HAL1 LINE L1 1167 1187 -1320 330 125 31 0 chr21 40025083 40025147 -4882423 - L1ME LINE L1 -452 5712 5647 595 69 0 0 chr21 40025204 40025291 -4882279 + Alu SINE Alu 226 312 0 307 213 12 12 chr21 40025343 40025423 -4882147 - L1MC2 LINE L1 -132 6212 6133 2228 104 0 43 chr21 40025426 40025772 -4881798 + AluSx SINE Alu 1 332 0 2141 142 3 3 chr21 40025951 40026261 -4881309 + AluJb SINE Alu 1 310 -2 202 345 205 22 chr21 40026472 40026701 -4880869 + L3b LINE CR1 1261 1531 -52 25 0 0 0 chr21 40027069 40027094 -4880476 + AT_rich Low_complexity Low_complexity 1 25 0 2302 88 3 0 chr21 40027095 40027380 -4880190 + AluSp SINE Alu 1 286 -27 423 0 0 0 chr21 40027380 40027427 -4880143 + (CA)n Simple_repeat Simple_repeat 2 48 0 1708 182 0 30 chr21 40027756 40028053 -4879517 + AluJb SINE Alu 1 288 -24 1178 268 120 12 chr21 40029308 40029617 -4877953 + L1MD1 LINE L1 5568 5842 -400 1852 103 0 4 chr21 40029617 40029869 -4877701 + AluSg SINE Alu 60 310 0 1178 268 120 12 chr21 40029869 40030154 -4877416 + L1MD1 LINE L1 5842 6227 -15 1928 117 11 0 chr21 40030209 40030473 -4877097 + AluSx SINE Alu 38 304 -8 580 156 8 16 chr21 40030528 40030650 -4876920 + L1MD2 LINE L1 5896 6016 -343 360 183 0 76 chr21 40030682 40030987 -4876583 + G-rich Low_complexity Low_complexity 1 281 0 1474 180 8 45 chr21 40030987 40031254 -4876316 - AluJb SINE Alu -55 257 1 624 307 62 11 chr21 40031257 40031531 -4876039 - L1MEc LINE L1 -4469 1927 1640 2552 129 61 68 chr21 40031539 40031840 -4875730 - Ricksha DNA DNA -7 3239 2942 2415 95 0 0 chr21 40031840 40032136 -4875434 - AluSq SINE Alu -17 296 1 2552 129 61 68 chr21 40032136 40032407 -4875163 - Ricksha DNA DNA -304 2942 2671 2320 164 56 12 chr21 40032405 40032888 -4874682 - Ricksha DNA DNA -1144 110 1 * 3241 264 105 25 chr21 40032888 40033222 -4874348 - L1MEc LINE L1 -4749 1647 1341 2533 60 0 3 chr21 40033222 40033520 -4874050 - AluSc SINE Alu -12 297 1 3241 264 105 25 chr21 40033520 40034599 -4872971 - L1MEc LINE L1 -5055 1341 105 2285 103 7 0 chr21 40034599 40034899 -4872671 - AluSx SINE Alu -10 302 1 3241 264 105 25 chr21 40034899 40034978 -4872592 - L1MEc LINE L1 -6291 105 34 720 204 8 0 chr21 40035347 40035479 -4872091 - FLAM_C SINE Alu 0 133 1 2311 118 0 0 chr21 40037590 40037895 -4869675 + AluSx SINE Alu 1 305 -7 2355 103 3 0 chr21 40044023 40044323 -4863247 - AluSx SINE Alu -11 301 1 306 149 65 6 chr21 40079118 40079286 -4828284 + (CA)n Simple_repeat Simple_repeat 1 178 0 560 193 199 12 chr21 40079816 40079987 -4827583 - MER20 DNA MER1_type -1 218 16 300 238 12 12 chr21 40080033 40080117 -4827453 + MER5B DNA MER1_type 87 170 -8 216 332 0 0 chr21 40084453 40084567 -4823003 + C-rich Low_complexity Low_complexity 2 187 0 212 182 0 23 chr21 40084957 40085001 -4822569 + (CCCCAG)n Simple_repeat Simple_repeat 2 44 0 2042 172 77 22 chr21 40085810 40086263 -4821307 + L1MB3 LINE L1 5701 6178 -5 378 276 34 20 chr21 40087873 40088026 -4819544 + L1ME1 LINE L1 6018 6334 0 2062 110 10 3 chr21 40088715 40089016 -4818554 + AluSx SINE Alu 3 305 -7 564 286 46 27 chr21 40089388 40089717 -4817853 + L1MEd LINE L1 895 1229 -4890 636 326 77 52 chr21 40089725 40090164 -4817406 + L1MEd LINE L1 1240 1689 -4440 323 318 77 4 chr21 40090241 40090474 -4817096 - L1M4 LINE L1 -3453 2693 2444 * 459 266 150 12 chr21 40090441 40090787 -4816783 + L1MEd LINE L1 2900 3293 -2836 977 280 51 42 chr21 40090813 40091037 -4816533 - HAL1 LINE L1 -188 2319 2099 2297 89 3 0 chr21 40091037 40091339 -4816231 - AluSc SINE Alu -6 303 1 2109 122 0 0 chr21 40091339 40091635 -4815935 - AluSx SINE Alu -16 296 1 288 70 0 0 chr21 40091638 40091681 -4815889 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 977 280 51 42 chr21 40091681 40092004 -4815566 - HAL1 LINE L1 -409 2098 1762 863 209 0 0 chr21 40092371 40092529 -4815041 + FRAM SINE Alu 1 40 0 405 0 0 0 chr21 40092965 40093010 -4814560 + (CA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr21 40093092 40093123 -4814447 + (CA)n Simple_repeat Simple_repeat 2 32 0 297 0 0 0 chr21 40093260 40093293 -4814277 + (CA)n Simple_repeat Simple_repeat 2 34 0 1785 136 31 7 chr21 40094972 40095259 -4812311 + AluJb SINE Alu 1 294 -18 237 181 213 12 chr21 40095929 40096015 -4811555 - MIR SINE MIR -60 148 60 377 253 196 6 chr21 40096200 40096358 -4811212 + MER3 DNA MER1_type 1 188 -21 259 289 10 31 chr21 40097722 40097819 -4809751 + L1MD2 LINE L1 6016 6110 -249 1795 127 33 4 chr21 40097848 40098124 -4809446 + AluSx SINE Alu 13 296 -16 238 196 0 0 chr21 40098130 40098181 -4809389 + L1ME1 LINE L1 6106 6156 -10 1974 143 3 0 chr21 40098215 40098516 -4809054 + AluSx SINE Alu 11 312 0 1615 161 30 23 chr21 40099002 40099307 -4808263 + AluJo SINE Alu 1 307 -5 1083 228 156 15 chr21 40101339 40101729 -4805841 + MLT1C LTR MaLR 6 450 -17 250 220 17 0 chr21 40102046 40102105 -4805465 - MER116 DNA Mariner -12 68 9 189 229 0 0 chr21 40102307 40102355 -4805215 + (CA)n Simple_repeat Simple_repeat 2 49 0 366 297 97 11 chr21 40102389 40102574 -4804996 + MIR SINE MIR 22 222 -40 1433 216 91 0 chr21 40102578 40102897 -4804673 + MER7A DNA MER2_type 1 346 0 885 79 0 62 chr21 40104463 40104692 -4802878 + (TCCC)n Simple_repeat Simple_repeat 1 214 0 758 112 59 12 chr21 40104692 40104862 -4802708 + CT-rich Low_complexity Low_complexity 3 180 0 1848 154 3 16 chr21 40106024 40106335 -4801235 + AluJb SINE Alu 1 307 -5 189 184 122 0 chr21 40107532 40107581 -4799989 - MIR SINE MIR -68 140 86 2032 111 3 13 chr21 40108973 40109271 -4798299 - AluSg SINE Alu -15 295 1 915 161 7 0 chr21 40109531 40109686 -4797884 - AluJb SINE Alu -22 290 135 226 217 60 48 chr21 40109970 40110053 -4797517 + MIR SINE MIR 117 200 -62 2152 96 3 0 chr21 40111449 40111740 -4795830 + AluSx SINE Alu 12 303 -9 751 187 48 43 chr21 40111793 40111980 -4795590 + MER5A DNA MER1_type 2 189 0 928 245 50 66 chr21 40112228 40112398 -4795172 + L1M4 LINE L1 4681 4852 -1294 2352 65 0 3 chr21 40112398 40112692 -4794878 - AluSc SINE Alu -16 293 1 928 245 50 66 chr21 40112692 40112978 -4794592 + L1M4 LINE L1 4852 5130 -1016 406 300 153 11 chr21 40113162 40113535 -4794035 + L2 LINE L2 2550 2975 -339 267 256 0 61 chr21 40113569 40113749 -4793821 + C-rich Low_complexity Low_complexity 6 174 0 1584 184 20 0 chr21 40114292 40114591 -4792979 - AluJo SINE Alu -7 305 1 906 133 7 0 chr21 40115996 40116139 -4791431 - FAM SINE Alu -23 162 19 3044 197 13 78 chr21 40116280 40116330 -4791240 - L1MD1 LINE L1 -273 5969 5917 1936 101 72 0 chr21 40116330 40116608 -4790962 + AluSq SINE Alu 6 303 -10 3044 197 13 78 chr21 40116608 40117233 -4790337 - L1MD1 LINE L1 -325 5917 5359 2288 88 10 0 chr21 40117233 40117538 -4790032 - AluSg SINE Alu -2 308 1 3044 197 13 78 chr21 40117538 40117844 -4789726 - L1MD1 LINE L1 -883 5359 5035 929 129 7 0 chr21 40117846 40117985 -4789585 - AluSg/x SINE Alu -27 283 144 2005 118 7 16 chr21 40117990 40118295 -4789275 - AluSp SINE Alu -11 302 1 750 307 82 38 chr21 40118297 40118688 -4788882 - L1MD1 LINE L1 -1107 5039 4632 561 174 56 66 chr21 40118726 40118922 -4788648 - MER33 DNA MER1_type -95 229 36 315 338 53 7 chr21 40119133 40119284 -4788286 - MER103 DNA DNA -7 159 2 317 341 34 22 chr21 40119356 40119535 -4788035 + MIR3 SINE MIR 3 183 -25 278 256 142 24 chr21 40120708 40120919 -4786651 - HAL1 LINE L1 -66 2441 2206 839 125 53 33 chr21 40121078 40121230 -4786340 - L1MA5A LINE L1 -1 6296 6142 929 287 147 23 chr21 40121657 40122215 -4785355 - HAL1 LINE L1 -648 1859 1233 1699 161 0 70 chr21 40122314 40122644 -4784926 + AluJb SINE Alu 2 308 -4 216 0 0 0 chr21 40123053 40123077 -4784493 + (TA)n Simple_repeat Simple_repeat 2 25 0 358 115 0 0 chr21 40123519 40123571 -4783999 + AluJ/FLAM SINE Alu 14 65 -237 1153 255 101 7 chr21 40123938 40124366 -4783204 - Charlie2 DNA MER1_type -17 2845 2378 1598 171 53 3 chr21 40124391 40124695 -4782875 - MER7A DNA MER2_type 0 346 30 394 299 43 24 chr21 40124860 40125024 -4782546 - Charlie2 DNA MER1_type -711 2151 1985 229 277 174 54 chr21 40125558 40125966 -4781604 + L2 LINE L2 2857 3313 0 53 69 0 0 chr21 40127360 40127462 -4780108 + GC_rich Low_complexity Low_complexity 1 102 0 210 265 0 20 chr21 40127463 40127561 -4780009 + G-rich Low_complexity Low_complexity 4 99 0 243 189 38 45 chr21 40127676 40127808 -4779762 + (CGGGG)n Simple_repeat Simple_repeat 5 135 0 21 0 0 0 chr21 40127899 40127920 -4779650 + GC_rich Low_complexity Low_complexity 1 21 0 215 207 27 45 chr21 40127939 40128050 -4779520 + (CGGG)n Simple_repeat Simple_repeat 4 112 0 389 231 126 32 chr21 40128586 40128793 -4778777 + L1MC/D LINE L1 5260 5485 -2323 1422 129 48 5 chr21 40128793 40129003 -4778567 + AluJo SINE Alu 86 304 -8 302 277 186 24 chr21 40130049 40130302 -4777268 + L1MC4 LINE L1 7690 7983 -59 2304 96 0 0 chr21 40131151 40131453 -4776117 + AluSq SINE Alu 1 302 0 804 280 65 0 chr21 40131514 40131746 -4775824 + MIR SINE MIR 16 262 0 2338 82 21 0 chr21 40131769 40132060 -4775510 - AluSx SINE Alu -15 297 1 2033 105 51 20 chr21 40135254 40135550 -4772020 + AluSx SINE Alu 1 305 -7 2297 79 3 41 chr21 40138179 40138494 -4769076 - AluSx SINE Alu -9 303 1 1814 174 38 82 chr21 40140509 40140987 -4766583 + MLT1C LTR MaLR 1 457 -10 278 279 67 29 chr21 40141160 40141264 -4766306 - MER5B DNA MER1_type -70 108 1 907 121 0 35 chr21 40141575 40141716 -4765854 + AluJo SINE Alu 1 136 -176 809 169 0 14 chr21 40141806 40141948 -4765622 + FRAM SINE Alu 36 175 -1 2442 86 3 0 chr21 40142245 40142549 -4765021 - AluSg SINE Alu -5 305 1 199 323 110 39 chr21 40142912 40143039 -4764531 - MIR3 SINE MIR -71 137 2 1543 201 92 0 chr21 40143522 40143870 -4763700 + MLT2C1 LTR ERVL 18 397 0 338 203 89 0 chr21 40145001 40145080 -4762490 - L1MB2 LINE L1 -5 6166 6081 198 0 0 0 chr21 40145258 40145280 -4762290 + (A)n Simple_repeat Simple_repeat 1 22 0 697 214 28 70 chr21 40146369 40146584 -4760986 - MER20 DNA MER1_type -13 206 1 1489 60 0 16 chr21 40148645 40148850 -4758720 + AluY SINE Alu 106 307 0 1021 135 0 0 chr21 40149365 40149506 -4758064 + AluJb SINE Alu 1 141 -171 31 68 0 0 chr21 40149530 40149589 -4757981 + AT_rich Low_complexity Low_complexity 1 59 0 252 256 90 60 chr21 40150353 40150392 -4757178 + L1ME3 LINE L1 6019 6055 -107 928 239 22 31 chr21 40150392 40150614 -4756956 - MER58A DNA MER1_type -4 220 1 252 256 90 60 chr21 40150614 40150707 -4756863 + L1ME3 LINE L1 6055 6155 -7 269 291 22 45 chr21 40150907 40151041 -4756529 - MIR SINE MIR -6 256 126 2048 243 68 63 chr21 40151300 40152099 -4755471 + MER21B LTR ERV1 13 815 -48 3901 161 6 0 chr21 40152490 40153118 -4754452 + MER41B LTR ERV1 3 634 -1 2451 101 0 0 chr21 40153861 40154168 -4753402 - AluSx SINE Alu -5 307 1 189 0 0 0 chr21 40154905 40154926 -4752644 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2033 126 25 0 chr21 40154929 40155215 -4752355 - AluSq SINE Alu -20 293 1 400 299 41 79 chr21 40156477 40156945 -4750625 + L1MC4 LINE L1 7557 8006 -36 791 142 15 8 chr21 40157538 40157672 -4749898 + L1MB3 LINE L1 6046 6180 -3 189 0 0 0 chr21 40157674 40157695 -4749875 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 355 287 70 49 chr21 40158142 40158285 -4749285 - L1ME4a LINE L1 -2 6119 5974 494 176 162 10 chr21 40158325 40158463 -4749107 + MER3 DNA MER1_type 52 209 0 864 118 0 0 chr21 40158565 40158684 -4748886 - FLAM_C SINE Alu -24 119 1 474 335 77 39 chr21 40158684 40159240 -4748330 - L1ME4a LINE L1 -227 5894 5276 842 293 112 85 chr21 40159264 40159909 -4747661 - L1ME4a LINE L1 -1771 4375 3714 1997 133 20 20 chr21 40159936 40160236 -4747334 - AluSg SINE Alu -8 302 3 1882 141 0 35 chr21 40160238 40160551 -4747019 - AluJo SINE Alu -9 303 2 2649 58 0 0 chr21 40161029 40161338 -4746232 - AluSg SINE Alu 0 310 2 21 0 0 0 chr21 40161338 40161359 -4746211 + AT_rich Low_complexity Low_complexity 1 21 0 2222 63 8 4 chr21 40162521 40162789 -4744781 + AluSp SINE Alu 27 295 -18 207 139 0 0 chr21 40162845 40162881 -4744689 + (A)n Simple_repeat Simple_repeat 1 36 0 2337 93 0 10 chr21 40163990 40164290 -4743280 - AluSx SINE Alu -15 297 1 390 89 0 0 chr21 40164347 40164403 -4743167 - L1PA4 LINE L1 -1 6154 6099 1605 248 83 30 chr21 40164764 40165215 -4742355 + MLT2B1 LTR ERVL 2 483 -37 378 0 0 0 chr21 40165215 40165257 -4742313 + (CA)n Simple_repeat Simple_repeat 2 43 0 1605 248 83 30 chr21 40165257 40165298 -4742272 + MLT2B1 LTR ERVL 483 520 0 273 170 80 70 chr21 40167090 40167190 -4740380 + MER5B DNA MER1_type 74 174 -4 327 294 0 0 chr21 40167568 40167854 -4739716 + (TG)n Simple_repeat Simple_repeat 1 286 0 676 290 150 12 chr21 40168313 40168859 -4738711 + MLT1E2 LTR MaLR 3 591 -2 234 43 0 64 chr21 40170301 40170348 -4737222 + (TG)n Simple_repeat Simple_repeat 1 44 0 1847 176 0 19 chr21 40170702 40171015 -4736555 - AluJo SINE Alu -5 307 1 2371 104 0 0 chr21 40171027 40171325 -4736245 - AluSx SINE Alu -14 298 1 2219 113 7 0 chr21 40171543 40171843 -4735727 - AluY SINE Alu -9 302 1 32 0 0 0 chr21 40173244 40173276 -4734294 + AT_rich Low_complexity Low_complexity 1 32 0 1721 162 8 0 chr21 40173754 40174007 -4733563 + AluJo SINE Alu 1 255 -57 2061 133 20 0 chr21 40175715 40176008 -4731562 - AluSg SINE Alu -11 299 1 2275 120 0 0 chr21 40176018 40176319 -4731251 - AluSg SINE Alu -9 301 1 216 0 0 0 chr21 40177095 40177119 -4730451 + (A)n Simple_repeat Simple_repeat 1 24 0 760 159 0 38 chr21 40177534 40177666 -4729904 + FLAM_C SINE Alu 17 143 0 362 228 87 8 chr21 40177717 40177844 -4729726 + MIR SINE MIR 14 150 -112 3296 152 25 26 chr21 40178364 40178971 -4728599 - LTR36 LTR ERV1 0 611 6 2336 107 0 7 chr21 40178971 40179281 -4728289 + AluSc SINE Alu 1 308 -1 614 183 11 145 chr21 40179874 40179977 -4727593 + MER21B LTR ERV1 9 78 -785 2419 78 3 3 chr21 40179977 40180271 -4727299 - AluSc SINE Alu -15 294 1 614 183 11 145 chr21 40180271 40180353 -4727217 + MER21B LTR ERV1 78 169 -694 224 141 87 0 chr21 40180375 40180524 -4727046 + (CCA)n Simple_repeat Simple_repeat 1 162 0 2074 226 51 36 chr21 40180605 40181216 -4726354 + MER21B LTR ERV1 193 812 -51 1823 163 3 7 chr21 40182698 40182992 -4724578 + AluJb SINE Alu 3 295 -17 325 303 61 8 chr21 40183202 40183334 -4724236 - MIR SINE MIR -16 246 108 2274 101 3 0 chr21 40183408 40183734 -4723836 - AluSg SINE Alu 0 333 7 226 267 107 15 chr21 40183853 40183984 -4723586 + L1ME4a LINE L1 5968 6110 -11 2019 90 78 0 chr21 40184135 40184403 -4723167 + AluSg SINE Alu 1 289 -21 2484 147 26 4 chr21 40184415 40185145 -4722425 + L1MA8 LINE L1 4908 5646 -645 2553 135 19 26 chr21 40185147 40185360 -4722210 + Tigger2a DNA MER2_type 3 216 -2492 2323 110 3 7 chr21 40185360 40185668 -4721902 - AluSg SINE Alu -2 308 2 2310 83 3 7 chr21 40185669 40185957 -4721613 - AluSg SINE Alu -13 297 11 2553 135 19 26 chr21 40185957 40186171 -4721399 + Tigger2a DNA MER2_type 215 429 -5 3143 132 65 11 chr21 40186174 40186788 -4720782 + L1MA8 LINE L1 5643 6289 -2 2311 174 18 37 chr21 40186929 40187287 -4720283 - L1MB3 LINE L1 -2 6181 5834 2392 98 0 7 chr21 40187287 40187592 -4719978 - AluSg SINE Alu -7 303 1 2311 174 18 37 chr21 40187592 40187743 -4719827 - L1MB3 LINE L1 -349 5834 5682 1186 164 67 18 chr21 40188508 40188733 -4718837 + MER46A DNA MER2_type 1 236 0 329 301 48 70 chr21 40188741 40188927 -4718643 + L1ME2 LINE L1 5725 5906 -258 293 118 20 0 chr21 40189533 40189584 -4717986 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1688 172 19 32 chr21 40189620 40189934 -4717636 + AluJo SINE Alu 1 310 -2 231 169 56 14 chr21 40190044 40190115 -4717455 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 1706 237 16 28 chr21 40190167 40190602 -4716968 - L1MB7 LINE L1 -41 6143 5714 1862 156 35 0 chr21 40191569 40191857 -4715713 + AluSx SINE Alu 1 298 -14 2447 78 0 31 chr21 40192781 40193102 -4714468 + AluY SINE Alu 1 311 0 1342 226 121 93 chr21 40193481 40194144 -4713426 + L1MC4a LINE L1 6233 6913 -895 1336 184 82 13 chr21 40194191 40194495 -4713075 + THE1C LTR MaLR 51 375 0 1605 281 73 28 chr21 40194496 40194827 -4712743 + L1MC4a LINE L1 6910 7225 -583 2002 137 79 17 chr21 40194827 40195230 -4712340 + MSTA LTR MaLR 1 428 0 1605 281 73 28 chr21 40195230 40195637 -4711933 + L1MC4a LINE L1 7225 7681 -127 394 132 26 0 chr21 40195639 40195715 -4711855 + CT-rich Low_complexity Low_complexity 1 78 0 2469 72 3 0 chr21 40195716 40196007 -4711563 - AluSp SINE Alu -21 292 1 366 236 221 0 chr21 40196056 40196196 -4711374 + L1MD3 LINE L1 7825 7995 0 267 239 190 88 chr21 40196214 40196419 -4711151 - MIR SINE MIR -6 256 31 218 319 97 28 chr21 40196928 40197144 -4710426 - L2 LINE L2 -177 3095 2865 267 31 0 0 chr21 40197421 40197453 -4710117 + (T)n Simple_repeat Simple_repeat 1 32 0 4907 53 5 2 chr21 40198059 40198700 -4708870 + L1PA6 LINE L1 5512 6154 0 253 235 82 0 chr21 40199229 40199314 -4708256 + MIR3 SINE MIR 88 179 -29 500 264 57 0 chr21 40201240 40201380 -4706190 + MIR SINE MIR 38 185 -77 23 0 0 0 chr21 40202377 40202400 -4705170 + GC_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 40202513 40202547 -4705023 + GC_rich Low_complexity Low_complexity 1 34 0 189 0 0 0 chr21 40202573 40202594 -4704976 + (CGGGG)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr21 40202609 40202638 -4704932 + GC_rich Low_complexity Low_complexity 1 29 0 23 86 0 0 chr21 40202695 40202753 -4704817 + GC_rich Low_complexity Low_complexity 1 58 0 207 315 0 0 chr21 40202822 40202876 -4704694 + (CGTG)n Simple_repeat Simple_repeat 4 57 0 266 109 36 104 chr21 40203133 40203325 -4704245 + (GTGTG)n Simple_repeat Simple_repeat 1 179 0 421 168 61 24 chr21 40203328 40203793 -4703777 + (TG)n Simple_repeat Simple_repeat 1 482 0 217 190 35 17 chr21 40203805 40203863 -4703707 + (TG)n Simple_repeat Simple_repeat 1 59 0 256 69 28 69 chr21 40203868 40203940 -4703630 + (GTGTG)n Simple_repeat Simple_repeat 1 69 0 1815 44 0 40 chr21 40204394 40204619 -4702951 + AluY SINE Alu 83 298 -13 2354 112 3 6 chr21 40205100 40205413 -4702157 - AluSx SINE Alu 0 312 1 441 335 64 0 chr21 40207274 40207462 -4700108 - MIR SINE MIR -16 246 47 538 70 0 0 chr21 40208151 40208222 -4699348 - FLAM SINE Alu -18 125 55 2260 102 3 3 chr21 40208230 40208525 -4699045 - AluSc SINE Alu -14 295 1 1803 139 0 35 chr21 40208695 40208982 -4698588 + AluJo SINE Alu 22 298 -14 224 322 68 20 chr21 40209732 40209878 -4697692 - MIR SINE MIR -77 185 33 254 146 83 0 chr21 40210323 40210371 -4697199 + MADE1 DNA Mariner 28 79 -1 1399 172 95 21 chr21 40210971 40211296 -4696274 - MLT1A1 LTR MaLR 0 365 17 223 228 0 101 chr21 40211616 40211634 -4695936 - MIR SINE MIR -74 188 170 2144 74 0 0 chr21 40211634 40211890 -4695680 + AluSg SINE Alu 46 301 -9 223 228 0 101 chr21 40211890 40211950 -4695620 - MIR SINE MIR -92 170 118 1344 191 16 157 chr21 40213114 40213618 -4693952 + L1MB5 LINE L1 5740 6172 -2 382 292 108 0 chr21 40213687 40213807 -4693763 - L2 LINE L2 -1 3312 3180 346 288 65 13 chr21 40215556 40215709 -4691861 + MIR SINE MIR 28 188 -74 2156 108 3 7 chr21 40216774 40217070 -4690500 - AluSx SINE Alu -14 298 4 548 282 115 24 chr21 40217639 40217848 -4689722 + MIR SINE MIR 3 230 -32 294 95 0 0 chr21 40218000 40218042 -4689528 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 2442 79 0 7 chr21 40218067 40218371 -4689199 - AluY SINE Alu -9 302 1 201 39 0 0 chr21 40218663 40218689 -4688881 + (CA)n Simple_repeat Simple_repeat 1 26 0 449 225 225 0 chr21 40219305 40219456 -4688114 + MER91A DNA MER1_type 12 196 0 2418 82 0 0 chr21 40220236 40220529 -4687041 + AluY SINE Alu 1 293 -18 2053 157 3 0 chr21 40220731 40221036 -4686534 - AluSx SINE Alu -6 306 1 386 255 181 0 chr21 40223161 40223310 -4684260 + MER5A DNA MER1_type 8 183 -6 377 281 79 14 chr21 40223619 40223758 -4683812 - L3 LINE CR1 -1229 348 201 25 0 0 50 chr21 40224761 40224778 -4682792 + AT_rich Low_complexity Low_complexity 1 17 -21 2467 84 3 0 chr21 40224778 40225087 -4682483 - AluY SINE Alu -1 310 1 25 0 0 50 chr21 40225087 40225109 -4682461 + AT_rich Low_complexity Low_complexity 17 38 0 273 238 12 0 chr21 40225317 40225397 -4682173 + MER5A DNA MER1_type 14 94 -95 333 219 65 106 chr21 40225476 40225599 -4681971 - MER5B DNA MER1_type 0 178 61 858 276 120 17 chr21 40225629 40226038 -4681532 - L1ME3A LINE L1 -9 6161 5711 776 183 69 10 chr21 40226461 40226663 -4680907 - MER96B DNA MER1_type? -14 403 190 2248 122 0 0 chr21 40226897 40227193 -4680377 - AluSx SINE Alu -1 311 16 31 44 0 0 chr21 40227399 40227444 -4680126 + AT_rich Low_complexity Low_complexity 1 45 0 672 241 0 0 chr21 40227476 40227620 -4679950 + FAM SINE Alu 1 44 -5 522 230 8 16 chr21 40227634 40227760 -4679810 - L1MEc LINE L1 -6236 160 36 500 302 93 60 chr21 40227757 40228208 -4679362 - L1MEd LINE L1 -5021 1098 633 * 2488 210 33 8 chr21 40228270 40228761 -4678809 - MER68 LTR ERV1 0 562 60 922 178 59 98 chr21 40229296 40229582 -4677988 - ORSL DNA AcHobo 0 275 1 21 0 0 0 chr21 40229591 40229612 -4677958 + AT_rich Low_complexity Low_complexity 1 21 0 238 305 24 0 chr21 40230487 40230569 -4677001 - MER112 DNA MER1_type -22 238 155 491 317 21 0 chr21 40230714 40230856 -4676714 + MER69 DNA AcHobo 169 313 -913 2730 227 154 60 chr21 40231010 40232121 -4675449 + L1MEc LINE L1 25 1239 -5157 1268 251 69 20 chr21 40232130 40232624 -4674946 + L1MEc LINE L1 1411 1928 -4468 * 2333 223 48 56 chr21 40232614 40233414 -4674156 + L1MC4 LINE L1 6830 7622 -420 184 273 45 45 chr21 40233456 40233522 -4674048 + L2 LINE L2 3183 3248 -24 184 209 93 0 chr21 40233493 40233536 -4674034 + MIR SINE MIR 216 262 0 224 125 0 54 chr21 40234557 40234613 -4672957 + (A)n Simple_repeat Simple_repeat 1 53 0 24 0 0 0 chr21 40234663 40234687 -4672883 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr21 40237304 40237352 -4670218 + AT_rich Low_complexity Low_complexity 1 48 0 1001 147 6 0 chr21 40243151 40243308 -4664262 - AluJo SINE Alu -7 295 138 2388 128 22 6 chr21 40243308 40243666 -4663904 + THE1B LTR MaLR 1 364 0 11712 93 5 15 chr21 40243666 40245262 -4662308 + THE1B-int LTR MaLR 1 1580 0 2111 162 14 8 chr21 40245262 40245621 -4661949 + THE1B LTR MaLR 1 361 -3 877 150 0 0 chr21 40245639 40245772 -4661798 - AluJo SINE Alu -169 133 1 2189 122 0 0 chr21 40245845 40246156 -4661414 + AluSx SINE Alu 2 312 0 398 298 47 23 chr21 40246362 40246533 -4661037 + MIR SINE MIR 9 183 -79 2087 118 3 0 chr21 40246737 40247041 -4660529 - AluSx SINE Alu -7 305 1 704 228 22 69 chr21 40247799 40248031 -4659539 - MER112 DNA MER1_type -39 221 1 451 204 11 11 chr21 40248044 40248137 -4659433 + MIR SINE MIR 106 198 -64 1059 275 170 22 chr21 40248312 40248806 -4658764 - L2 LINE L2 -424 2890 2324 661 233 38 6 chr21 40248812 40248971 -4658599 + LTR16C LTR ERVL 328 491 0 986 230 52 16 chr21 40249517 40249769 -4657801 - MIR SINE MIR 0 262 2 418 257 48 14 chr21 40249780 40249925 -4657645 - MIR SINE MIR -70 192 45 229 308 99 0 chr21 40249921 40250012 -4657558 - L2 LINE L2 -30 3283 3184 * 864 246 45 0 chr21 40250252 40250472 -4657098 - MIR SINE MIR 0 262 33 469 308 52 17 chr21 40251583 40251755 -4655815 + MIR SINE MIR 31 208 -54 200 397 81 11 chr21 40251835 40252009 -4655561 - L2 LINE L2 -30 3242 3057 1096 143 37 21 chr21 40252132 40252321 -4655249 + MER46A DNA MER2_type 44 235 -1 2108 84 10 51 chr21 40252555 40252866 -4654704 - AluSx SINE Alu -14 298 1 339 320 174 21 chr21 40254280 40254561 -4653009 - L2 LINE L2 -2 3311 2988 22 0 0 0 chr21 40254573 40254595 -4652975 + AT_rich Low_complexity Low_complexity 1 22 0 2230 77 0 42 chr21 40254683 40254995 -4652575 + AluSq SINE Alu 1 299 -14 1929 174 39 29 chr21 40255205 40255589 -4651981 + MLT1B LTR MaLR 3 390 0 257 351 73 47 chr21 40255857 40256307 -4651263 + L2 LINE L2 2708 3232 -40 198 288 147 47 chr21 40256438 40256629 -4650941 + L2 LINE L2 2197 2406 -908 1738 95 11 109 chr21 40256774 40257121 -4650449 + AluSq SINE Alu 1 313 0 181 200 29 0 chr21 40257244 40257279 -4650291 + L2 LINE L2 3156 3191 -81 26 0 0 0 chr21 40258354 40258380 -4649190 + GC_rich Low_complexity Low_complexity 1 26 0 40 79 0 0 chr21 40258972 40259061 -4648509 + GC_rich Low_complexity Low_complexity 1 89 0 1632 166 14 0 chr21 40260257 40260553 -4647017 - AluJb SINE Alu -12 300 1 425 300 181 29 chr21 40261266 40261576 -4645994 + L2 LINE L2 2621 2977 -337 375 186 221 0 chr21 40261848 40261961 -4645609 - MLT1C LTR MaLR -153 314 177 1047 231 153 7 chr21 40263155 40263436 -4644134 - MLT1D LTR MaLR -3 502 181 257 0 0 29 chr21 40263449 40263483 -4644087 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 801 188 7 0 chr21 40263491 40263629 -4643941 - FRAM SINE Alu -37 139 1 842 206 32 16 chr21 40263634 40263823 -4643747 - MLT1D LTR MaLR -313 192 1 2060 135 3 0 chr21 40266020 40266331 -4641239 - AluJo SINE Alu 0 312 1 236 333 14 0 chr21 40268238 40268310 -4639260 + L2 LINE L2 1884 1956 -1358 281 238 48 0 chr21 40268358 40268421 -4639149 - L2 LINE L2 -61 3252 3187 324 183 56 28 chr21 40268747 40268818 -4638752 + L2 LINE L2 3197 3269 -3 2062 218 103 0 chr21 40269399 40269885 -4637685 + L1MB1 LINE L1 5633 6168 0 305 179 0 15 chr21 40270553 40270620 -4636950 + MER54A LTR ERVL 1 66 -835 1370 260 71 5 chr21 40270951 40271389 -4636181 + MLT1C LTR MaLR 1 467 0 392 316 11 6 chr21 40271391 40271425 -4636145 + MIR SINE MIR 2 34 -174 1835 125 17 3 chr21 40271425 40271713 -4635857 + AluJo SINE Alu 3 294 -18 392 316 11 6 chr21 40271713 40271835 -4635735 + MIR SINE MIR 34 162 -46 1286 230 68 42 chr21 40272112 40272565 -4635005 - MLT1C LTR MaLR -2 465 1 1824 204 27 27 chr21 40273482 40273517 -4634053 - MLT2D LTR ERVL -2 412 378 378 0 0 0 chr21 40273517 40273559 -4634011 + (TG)n Simple_repeat Simple_repeat 1 42 0 1824 204 27 27 chr21 40273559 40273934 -4633636 - MLT2D LTR ERVL -35 379 2 2043 194 127 6 chr21 40274380 40274901 -4632669 - MER54A LTR ERVL -35 866 283 378 115 49 0 chr21 40274891 40274952 -4632618 - MER54A LTR ERVL -831 70 7 * 351 147 52 0 chr21 40274971 40275087 -4632483 + (TG)n Simple_repeat Simple_repeat 1 122 0 619 78 52 26 chr21 40275383 40275660 -4631910 + (TG)n Simple_repeat Simple_repeat 1 284 0 665 75 52 23 chr21 40275695 40275869 -4631701 + (TG)n Simple_repeat Simple_repeat 2 180 0 482 107 71 6 chr21 40275891 40276060 -4631510 + (TG)n Simple_repeat Simple_repeat 1 180 0 224 67 67 27 chr21 40276078 40276153 -4631417 + (TG)n Simple_repeat Simple_repeat 1 78 0 282 134 67 8 chr21 40276184 40276303 -4631267 + (TG)n Simple_repeat Simple_repeat 1 126 0 234 324 0 0 chr21 40277274 40277345 -4630225 - MIR3 SINE MIR -11 197 127 185 373 0 0 chr21 40278223 40278290 -4629280 - MIR3 SINE MIR -15 193 127 2254 160 26 5 chr21 40278544 40278926 -4628644 + MLT1B LTR MaLR 1 390 0 938 275 70 64 chr21 40279252 40279753 -4627817 + MLT1J LTR MaLR 1 504 -7 2285 101 0 3 chr21 40281081 40281389 -4626181 - AluSq SINE Alu -6 307 1 24 0 0 0 chr21 40281400 40281424 -4626146 + AT_rich Low_complexity Low_complexity 1 24 0 286 283 30 0 chr21 40281523 40281622 -4625948 + MER5B DNA MER1_type 8 109 -69 2146 125 0 0 chr21 40282141 40282452 -4625118 + AluSx SINE Alu 1 311 -1 2333 75 3 3 chr21 40282586 40282892 -4624678 - AluY SINE Alu -5 306 1 1128 156 14 38 chr21 40283713 40283925 -4623645 - THE1B LTR MaLR 0 364 158 1911 147 0 0 chr21 40283925 40284211 -4623359 + AluSx SINE Alu 1 286 -26 1430 133 0 9 chr21 40284211 40284436 -4623134 + AluSg/x SINE Alu 75 297 -13 1150 81 31 12 chr21 40284436 40284597 -4622973 - THE1B LTR MaLR -200 164 1 1717 178 30 95 chr21 40284970 40285130 -4622440 + L1MB8 LINE L1 5715 5884 -294 7298 65 2 0 chr21 40285130 40286126 -4621444 + L1PA8 LINE L1 5170 6167 -5 1717 178 30 95 chr21 40286126 40286459 -4621111 + L1MB8 LINE L1 5884 6176 -2 1680 187 91 51 chr21 40287289 40287702 -4619868 + MLT1D LTR MaLR 1 437 -68 2235 170 14 8 chr21 40287702 40288061 -4619509 - MLT1A1 LTR MaLR -4 361 1 1680 187 91 51 chr21 40288061 40288133 -4619437 + MLT1D LTR MaLR 437 505 0 404 268 127 49 chr21 40290458 40290663 -4616907 + LTR16C LTR ERVL 89 309 -182 306 195 0 39 chr21 40290708 40290785 -4616785 + LTR16C LTR ERVL 391 464 -27 1745 139 26 0 chr21 40290880 40291173 -4616397 - AluJb SINE Alu 0 311 12 361 303 56 31 chr21 40292372 40292534 -4615036 - MIR SINE MIR -37 225 60 198 242 32 16 chr21 40292950 40293012 -4614558 + L3 LINE CR1 1409 1471 -106 1872 124 0 4 chr21 40293200 40293499 -4614071 - AluSx SINE Alu 0 309 12 298 226 0 0 chr21 40294001 40294063 -4613507 - AluJo SINE Alu -6 296 235 204 111 0 0 chr21 40294063 40294099 -4613471 + (T)n Simple_repeat Simple_repeat 1 36 0 892 124 0 0 chr21 40294103 40294232 -4613338 - AluSq/x SINE Alu -179 133 5 204 217 0 0 chr21 40294984 40295030 -4612540 + (TA)n Simple_repeat Simple_repeat 1 46 0 1515 213 35 3 chr21 40295030 40295345 -4612225 - MSTB1 LTR MaLR -66 366 42 1376 158 4 4 chr21 40295367 40295595 -4611975 - AluJo SINE Alu -84 228 1 341 98 20 0 chr21 40295597 40295648 -4611922 - MSTB1 LTR MaLR -378 54 3 1902 104 70 0 chr21 40296093 40296363 -4611207 + AluSg SINE Alu 1 289 -21 1586 143 21 73 chr21 40297383 40297712 -4609858 + AluJo SINE Alu 1 312 0 463 231 218 0 chr21 40297758 40297905 -4609665 - MER5A DNA MER1_type -1 188 10 386 196 13 72 chr21 40299336 40299489 -4608081 - L1MC4 LINE L1 -5 8037 7894 256 287 0 0 chr21 40299520 40299621 -4607949 + L1MC4 LINE L1 6603 6703 -1339 353 348 36 0 chr21 40299656 40299768 -4607802 + L1MC4 LINE L1 6595 6710 -1332 232 261 80 0 chr21 40299773 40299861 -4607709 - L1MC4 LINE L1 -151 7891 7797 2269 155 0 0 chr21 40300763 40301117 -4606453 - L1PB1 LINE L1 -4 6147 5794 2113 218 96 23 chr21 40301367 40302013 -4605557 - L1ME2 LINE L1 -10 6154 5462 1647 169 0 51 chr21 40302248 40302562 -4605008 - AluJb SINE Alu -14 298 1 184 244 186 58 chr21 40302716 40302802 -4604768 - MIR3 SINE MIR -46 162 66 199 364 127 9 chr21 40303465 40303685 -4603885 - L3 LINE CR1 -78 1499 1254 488 240 99 13 chr21 40305146 40305428 -4602142 - MLT1C LTR MaLR -120 347 10 287 265 29 0 chr21 40306767 40306835 -4600735 - L2 LINE L2 -7 3265 3196 1778 156 0 25 chr21 40306856 40307176 -4600394 - AluJb SINE Alu 0 312 1 263 260 40 40 chr21 40308665 40308765 -4598805 - L3b LINE CR1 -210 1373 1274 894 138 26 0 chr21 40309121 40309273 -4598297 + AluJb SINE Alu 149 304 -8 469 113 0 0 chr21 40309309 40309371 -4598199 + AluJ/FLAM SINE Alu 2 63 -249 1120 208 42 101 chr21 40309406 40309814 -4597756 - MLT1B LTR MaLR 0 390 7 1280 231 75 33 chr21 40311401 40311825 -4595745 - MLT1C LTR MaLR -10 457 16 238 250 0 42 chr21 40311966 40312038 -4595532 + MER5B DNA MER1_type 74 142 -36 789 209 118 103 chr21 40312758 40313095 -4594475 + MLT2B1 LTR ERVL 104 449 -71 2160 119 3 0 chr21 40313095 40313406 -4594164 - AluSq SINE Alu -1 312 1 789 209 118 103 chr21 40313406 40313475 -4594095 + MLT2B1 LTR ERVL 449 516 -4 2020 125 13 0 chr21 40314077 40314382 -4593188 - AluSg SINE Alu -1 309 1 192 304 0 0 chr21 40314649 40314695 -4592875 - L3 LINE CR1 -14 1563 1518 366 159 45 23 chr21 40314737 40314825 -4592745 + MER67C LTR ERV1 4 93 -617 1938 109 0 11 chr21 40314827 40315102 -4592468 - AluSx SINE Alu -6 306 35 2065 182 35 21 chr21 40315118 40315515 -4592055 + MER67C LTR ERV1 273 678 -32 2264 98 3 0 chr21 40315515 40315821 -4591749 - AluSg1 SINE Alu -2 307 1 2065 182 35 21 chr21 40315821 40315852 -4591718 + MER67C LTR ERV1 678 707 -3 193 320 19 117 chr21 40315910 40316132 -4591438 - MIR SINE MIR -45 217 20 182 306 120 0 chr21 40316836 40316944 -4590626 - MER5A DNA MER1_type -65 124 4 205 316 32 21 chr21 40316953 40317048 -4590522 + L3 LINE CR1 1481 1576 -1 203 258 0 20 chr21 40317281 40317432 -4590138 + (TG)n Simple_repeat Simple_repeat 1 148 0 363 73 0 0 chr21 40317768 40317823 -4589747 + (CA)n Simple_repeat Simple_repeat 2 56 0 311 279 221 7 chr21 40318055 40318209 -4589361 + MIR SINE MIR 2 188 -74 380 387 63 9 chr21 40319069 40319291 -4588279 - L1ME4a LINE L1 -181 5940 5707 301 211 116 21 chr21 40320216 40320311 -4587259 - MER5A DNA MER1_type -80 109 6 1070 184 0 22 chr21 40320393 40320648 -4586922 + AluJb SINE Alu 81 312 0 197 360 140 5 chr21 40321153 40321339 -4586231 - MIR SINE MIR -29 233 23 288 170 0 0 chr21 40321558 40321611 -4585959 + (TG)n Simple_repeat Simple_repeat 1 53 0 1768 196 92 5 chr21 40322594 40323008 -4584562 - MLT1C LTR MaLR -12 455 6 1966 92 0 76 chr21 40323283 40323441 -4584129 - AluSx SINE Alu -20 292 168 2214 77 10 16 chr21 40323441 40323752 -4583818 - AluY SINE Alu -2 309 1 1966 92 0 76 chr21 40323752 40323909 -4583661 - AluSx SINE Alu -144 168 1 635 238 101 0 chr21 40324912 40325080 -4582490 - MER5A DNA MER1_type -4 185 1 479 302 7 0 chr21 40325096 40325235 -4582335 - MER5B DNA MER1_type -35 143 4 585 0 0 0 chr21 40325553 40325618 -4581952 + (TG)n Simple_repeat Simple_repeat 1 65 0 4325 40 55 0 chr21 40325844 40326373 -4581197 - LTR6B LTR ERV1 0 558 1 353 261 0 0 chr21 40328583 40328671 -4578899 - MER63 DNA MER1_type -277 785 698 22 35 0 0 chr21 40329152 40329181 -4578389 + AT_rich Low_complexity Low_complexity 1 29 0 434 359 27 8 chr21 40329339 40329601 -4577969 - L1ME4a LINE L1 -225 5896 5630 814 239 98 0 chr21 40330173 40330428 -4577142 - L1MD3 LINE L1 -2 7993 7714 495 304 87 11 chr21 40331735 40332021 -4575549 + L2 LINE L2 2303 2610 -704 307 280 232 19 chr21 40332071 40332282 -4575288 + L2 LINE L2 3041 3296 -17 243 0 0 0 chr21 40332282 40332309 -4575261 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 282 241 17 46 chr21 40333266 40333440 -4574130 + (TATAA)n Simple_repeat Simple_repeat 1 169 0 315 234 26 0 chr21 40334135 40334212 -4573358 - L1ME3 LINE L1 -10 6152 6074 373 189 94 0 chr21 40334421 40334527 -4573043 - MER20 DNA MER1_type -80 139 24 493 206 19 0 chr21 40334736 40334843 -4572727 + MER45A DNA AcHobo 39 147 -31 656 249 76 25 chr21 40335110 40335235 -4572335 + MIR SINE MIR 19 159 -103 2208 109 0 3 chr21 40335235 40335547 -4572023 + AluSx SINE Alu 1 311 -1 656 249 76 25 chr21 40335547 40335618 -4571952 + MIR SINE MIR 159 225 -37 2110 148 49 39 chr21 40336252 40336638 -4570932 - MLT1B LTR MaLR 0 390 1 231 180 115 0 chr21 40336745 40336806 -4570764 + MIR SINE MIR 83 150 -58 554 227 62 8 chr21 40337589 40337717 -4569853 - MER58B DNA MER1_type 0 341 207 1367 268 24 12 chr21 40337980 40338402 -4569168 - MER90 LTR ERV1 0 614 188 3241 114 6 2 chr21 40339031 40339538 -4568032 + MER75 DNA T2_type 6 514 0 190 349 0 0 chr21 40339702 40339768 -4567802 - L2 LINE L2 -36 3236 3171 182 380 166 19 chr21 40340098 40340868 -4566702 - L2 LINE L2 -747 2567 1685 393 327 6 39 chr21 40341322 40341478 -4566092 - MIR SINE MIR -36 226 76 21 0 0 0 chr21 40341740 40341761 -4565809 + AT_rich Low_complexity Low_complexity 1 21 0 1392 175 36 55 chr21 40341761 40342070 -4565500 - AluJb SINE Alu -9 303 1 181 339 102 17 chr21 40342196 40342314 -4565256 + L2 LINE L2 3182 3309 -4 266 302 140 44 chr21 40343099 40343383 -4564187 + L3 LINE CR1 1083 1426 -151 1697 212 32 95 chr21 40343392 40343641 -4563929 - MLT1D LTR MaLR 0 505 307 2021 157 0 0 chr21 40343641 40343946 -4563624 - AluJo SINE Alu -7 305 1 1697 212 32 95 chr21 40343946 40344234 -4563336 - MLT1D LTR MaLR -198 307 2 443 329 35 29 chr21 40344269 40344439 -4563131 + MIR SINE MIR 65 235 -27 210 398 19 9 chr21 40344552 40344660 -4562910 + L2 LINE L2 3185 3293 -20 274 274 0 0 chr21 40344663 40344736 -4562834 - MER116 DNA Mariner -2 78 6 183 42 0 0 chr21 40346067 40346091 -4561479 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 2336 70 3 3 chr21 40347038 40347336 -4560234 + AluSg SINE Alu 1 298 -12 1575 157 0 0 chr21 40348238 40348474 -4559096 - AluJb SINE Alu -18 294 59 428 169 51 51 chr21 40349294 40349472 -4558098 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 319 318 19 0 chr21 40350230 40350337 -4557233 + MER81 DNA DNA 5 113 -1 2684 195 35 12 chr21 40351309 40351816 -4555754 - LTR40a LTR ERVL 0 519 1 2453 86 0 0 chr21 40352988 40353301 -4554269 - AluSq SINE Alu 0 313 1 791 228 139 57 chr21 40353995 40354420 -4553150 + MLT1C LTR MaLR 1 460 -7 554 323 21 5 chr21 40355297 40355486 -4552084 + MIR SINE MIR 34 225 -37 685 195 31 74 chr21 40358330 40358587 -4548983 - ORSL DNA AcHobo -27 248 3 324 260 154 0 chr21 40363648 40363752 -4543818 + L2 LINE L2 3151 3270 -2 249 263 13 13 chr21 40364003 40364079 -4543491 - MER94 DNA DNA -6 128 53 1742 151 0 60 chr21 40364604 40364921 -4542649 + AluSx SINE Alu 1 298 -14 1816 188 63 22 chr21 40365194 40365345 -4542225 - L1MB7 LINE L1 -21 6163 6020 2192 117 0 0 chr21 40365345 40365645 -4541925 + AluSx SINE Alu 1 300 -12 1816 188 63 22 chr21 40365645 40365939 -4541631 - L1MB7 LINE L1 -164 6020 5700 512 344 84 21 chr21 40368532 40369017 -4538553 + L1ME LINE L1 5257 5772 -349 295 164 0 27 chr21 40369900 40369973 -4537597 + (TG)n Simple_repeat Simple_repeat 2 72 0 202 307 36 64 chr21 40370324 40370464 -4537106 - L2 LINE L2 -170 3102 2967 663 217 0 0 chr21 40371085 40371242 -4536328 + (TG)n Simple_repeat Simple_repeat 2 158 0 474 253 3 0 chr21 40372032 40372362 -4535208 + (TG)n Simple_repeat Simple_repeat 1 331 0 189 374 48 0 chr21 40373396 40373479 -4534091 - MIR SINE MIR -48 214 128 238 284 31 71 chr21 40375330 40375457 -4532113 + MER89 LTR ERV1 437 558 -1 29 0 0 0 chr21 40376711 40376740 -4530830 + AT_rich Low_complexity Low_complexity 1 29 0 1642 200 135 19 chr21 40377399 40377814 -4529756 - MLT1C LTR MaLR 0 467 5 496 321 54 0 chr21 40378490 40378658 -4528912 - MIR SINE MIR -4 258 82 240 35 0 0 chr21 40378773 40378802 -4528768 + (TG)n Simple_repeat Simple_repeat 1 29 0 826 244 46 29 chr21 40379033 40379271 -4528299 + MLT1J LTR MaLR 7 248 -263 2187 86 7 20 chr21 40379361 40379662 -4527908 - AluY SINE Alu -12 299 3 392 237 0 21 chr21 40379672 40379769 -4527801 + MLT1J LTR MaLR 414 508 -3 288 226 78 61 chr21 40380220 40380335 -4527235 + MER5B DNA MER1_type 1 117 -61 219 306 14 14 chr21 40380568 40380640 -4526930 + MIR SINE MIR 16 87 -175 826 147 25 17 chr21 40380641 40380879 -4526691 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 756 135 25 14 chr21 40380892 40381178 -4526392 + (TCCA)n Simple_repeat Simple_repeat 1 289 0 194 152 0 0 chr21 40381244 40381277 -4526293 + MIR SINE MIR 158 190 -72 498 287 15 0 chr21 40381316 40381452 -4526118 + MIR SINE MIR 34 171 -91 239 270 42 77 chr21 40381844 40381989 -4525581 - MIR SINE MIR -55 153 18 913 225 44 121 chr21 40382071 40382435 -4525135 - MLT1C LTR MaLR -21 446 34 1727 121 0 12 chr21 40382440 40382736 -4524834 - AluSc SINE Alu 0 327 35 30 27 0 0 chr21 40383134 40383171 -4524399 + AT_rich Low_complexity Low_complexity 1 37 0 1970 99 0 40 chr21 40383171 40383474 -4524096 - AluSc SINE Alu -17 292 2 1060 54 8 0 chr21 40383476 40383605 -4523965 - L1PA8 LINE L1 -7 6165 6036 1553 264 77 26 chr21 40384756 40385253 -4522317 - L1MB5 LINE L1 -4 6170 5649 2231 107 0 0 chr21 40385298 40385607 -4521963 - AluSc SINE Alu 0 309 1 295 241 21 48 chr21 40386192 40386337 -4521233 + (GGGTG)n Simple_repeat Simple_repeat 4 144 0 411 279 37 22 chr21 40386642 40386778 -4520792 + MIR SINE MIR 55 192 -70 2289 84 3 0 chr21 40387130 40387426 -4520144 - AluSp SINE Alu -16 297 1 1582 173 42 0 chr21 40387454 40387737 -4519833 + AluJb SINE Alu 18 312 0 1763 134 76 6 chr21 40387790 40388104 -4519466 - MSTA LTR MaLR -92 336 1 208 306 98 11 chr21 40388500 40388665 -4518905 + MIR3 SINE MIR 8 184 -66 266 262 78 19 chr21 40388774 40388877 -4518693 - MIR SINE MIR -82 180 72 201 296 34 45 chr21 40388990 40389078 -4518492 - MIR SINE MIR -168 94 8 208 306 98 11 chr21 40389634 40389799 -4517771 - MIR3 SINE MIR -66 142 8 198 341 127 17 chr21 40391298 40391471 -4516099 - MIR SINE MIR -41 221 30 2250 98 0 0 chr21 40392096 40392392 -4515178 - AluSq SINE Alu -17 296 1 506 306 13 6 chr21 40392487 40392644 -4514926 - L2 LINE L2 -1 3271 3114 654 234 0 0 chr21 40392729 40392904 -4514666 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 914 148 0 11 chr21 40392920 40393102 -4514468 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 218 259 37 0 chr21 40393528 40393582 -4513988 + MER91C DNA MER1_type 64 119 -21 271 359 111 0 chr21 40393722 40393839 -4513731 - MIR SINE MIR -109 153 24 670 207 24 151 chr21 40396512 40396850 -4510720 - MER51C LTR ERV1 0 640 346 229 296 148 19 chr21 40397080 40397188 -4510382 + MIR SINE MIR 16 137 -125 454 308 64 58 chr21 40397216 40397536 -4510034 - MLT1K LTR MaLR -1 587 262 2070 82 3 27 chr21 40397536 40397880 -4509690 + AluSg SINE Alu 1 310 0 454 308 64 58 chr21 40397880 40397994 -4509576 - MLT1K LTR MaLR -326 262 150 200 245 20 0 chr21 40398625 40398674 -4508896 - MIR SINE MIR -136 126 77 277 335 19 45 chr21 40401604 40401759 -4505811 - MIR SINE MIR -16 246 96 264 368 92 0 chr21 40402229 40402381 -4505189 - MIR SINE MIR -10 252 87 2193 229 69 26 chr21 40402819 40403399 -4504171 - MER77 LTR ERV1 0 605 1 709 249 140 0 chr21 40404231 40404424 -4503146 + MER77 LTR ERV1 355 574 -31 2181 110 0 0 chr21 40404839 40405140 -4502430 + AluSx SINE Alu 2 302 -10 269 290 80 30 chr21 40405917 40406017 -4501553 - MIR SINE MIR -43 219 115 1453 230 49 47 chr21 40406143 40406609 -4500961 - MLT1D LTR MaLR -5 500 34 233 170 75 28 chr21 40406775 40406881 -4500689 + MER63 DNA MER1_type 860 970 -90 * 1080 250 40 25 chr21 40406865 40407189 -4500381 - MER63 DNA MER1_type -179 882 554 1148 200 47 0 chr21 40407203 40407438 -4500132 - MER63 DNA MER1_type -815 246 1 238 288 64 100 chr21 40407438 40407889 -4499681 + L2 LINE L2 2837 3271 -1 602 196 3 3 chr21 40409635 40409692 -4497878 + (CA)n Simple_repeat Simple_repeat 1 57 -614 2171 121 3 0 chr21 40409692 40409997 -4497573 + AluSx SINE Alu 1 306 -6 602 196 3 3 chr21 40409997 40410306 -4497264 + (CA)n Simple_repeat Simple_repeat 56 671 0 465 71 0 0 chr21 40412495 40412565 -4495005 + Alu SINE Alu 240 309 -1 262 236 83 0 chr21 40412579 40412651 -4494919 - L1MD2 LINE L1 -47 6312 6235 2220 97 0 0 chr21 40413881 40414180 -4493390 + AluSx SINE Alu 1 299 -13 1999 76 0 0 chr21 40414332 40414595 -4492975 + AluSq SINE Alu 1 263 -50 346 390 34 31 chr21 40414976 40415268 -4492302 + L1M4 LINE L1 2257 2549 -3597 402 252 26 104 chr21 40415319 40415399 -4492171 - L1MC4 LINE L1 -1 8041 7956 1278 251 32 41 chr21 40415399 40415742 -4491828 + MER58B DNA MER1_type 1 340 -1 402 252 26 104 chr21 40415742 40415891 -4491679 - L1MC4 LINE L1 -86 7956 7830 22 35 0 0 chr21 40415917 40415946 -4491624 + AT_rich Low_complexity Low_complexity 1 29 0 1002 255 135 8 chr21 40415983 40416599 -4490971 - L1ME2 LINE L1 -100 6133 5414 2170 81 28 0 chr21 40416612 40416896 -4490674 + AluSx SINE Alu 14 305 -7 283 197 0 66 chr21 40417095 40417171 -4490399 - L1MB8 LINE L1 -1 6177 6107 * 1291 203 83 31 chr21 40417169 40417518 -4490052 - L1ME2 LINE L1 -1166 5049 4683 4484 249 16 27 chr21 40417529 40419120 -4488450 - L1ME2 LINE L1 -2544 3671 2137 638 213 27 101 chr21 40419167 40419463 -4488107 - L1ME2 LINE L1 -4249 2147 1874 258 354 131 0 chr21 40419610 40419740 -4487830 + L2 LINE L2 3110 3256 -16 2186 107 3 0 chr21 40420680 40420988 -4486582 - AluSq SINE Alu -4 309 1 605 310 138 22 chr21 40422618 40423024 -4484546 - MLT1K LTR MaLR -34 554 102 2159 129 7 0 chr21 40423382 40423736 -4483834 + AluSx SINE Alu 1 356 0 2454 93 0 0 chr21 40425109 40425411 -4482159 - AluSq SINE Alu -11 302 1 180 0 0 0 chr21 40425688 40425708 -4481862 + (T)n Simple_repeat Simple_repeat 1 20 0 501 300 140 31 chr21 40426094 40426357 -4481213 - L1M2 LINE L1 -592 5572 5278 1691 173 14 0 chr21 40426357 40426664 -4480906 - AluJo SINE Alu 0 311 1 501 300 140 31 chr21 40426664 40426692 -4480878 - L1M2 LINE L1 -886 5278 5254 230 273 0 11 chr21 40426941 40427029 -4480541 - L1M2 LINE L1 -2637 3509 3423 376 258 31 0 chr21 40427200 40427297 -4480273 - L1MDa LINE L1 -2866 3540 3441 477 289 113 38 chr21 40427406 40427449 -4480121 - L1M4 LINE L1 -3235 2911 2873 2183 92 55 0 chr21 40427449 40427741 -4479829 - AluSp SINE Alu -5 308 1 477 289 113 38 chr21 40427741 40427936 -4479634 - L1M4 LINE L1 -3273 2873 2655 427 306 49 30 chr21 40428155 40428396 -4479174 - L1M4 LINE L1 -2981 3165 2930 7614 40 12 0 chr21 40428396 40429590 -4477980 - L1PA8 LINE L1 -2 6170 4976 427 306 49 30 chr21 40429590 40429815 -4477755 - L1M4 LINE L1 -3216 2930 2690 261 260 27 0 chr21 40429957 40430030 -4477540 + LTR16C LTR ERVL 146 220 -271 325 262 37 77 chr21 40430364 40430598 -4476972 - L1MDa LINE L1 -2931 3475 1107 2287 107 0 3 chr21 40430785 40431076 -4476494 + AluSx SINE Alu 1 290 -22 184 284 28 64 chr21 40431702 40431811 -4475759 - MIR SINE MIR -86 122 18 386 109 63 29 chr21 40431935 40432109 -4475461 + (TG)n Simple_repeat Simple_repeat 1 180 0 420 88 86 17 chr21 40432170 40432469 -4475101 + (TG)n Simple_repeat Simple_repeat 1 319 0 573 128 67 12 chr21 40432491 40432917 -4474653 + (TG)n Simple_repeat Simple_repeat 1 449 0 687 252 94 35 chr21 40433255 40433551 -4474019 - MER63 DNA MER1_type -124 936 1 2616 61 0 3 chr21 40433677 40433988 -4473582 + AluY SINE Alu 1 310 -1 236 329 14 7 chr21 40434256 40434399 -4473171 + L1MC/D LINE L1 5722 5865 -1943 186 71 0 0 chr21 40434467 40434495 -4473075 + (CA)n Simple_repeat Simple_repeat 1 28 0 500 128 0 64 chr21 40434537 40434558 -4473012 - MLT1A2 LTR MaLR 0 374 353 2272 107 92 15 chr21 40434558 40434896 -4472674 + THE1B LTR MaLR 1 364 0 500 128 0 64 chr21 40434896 40434968 -4472602 - MLT1A2 LTR MaLR -21 353 287 2760 222 14 6 chr21 40434968 40435589 -4471981 - MLT1A1-int LTR MaLR -1109 626 1 901 231 82 46 chr21 40435589 40435918 -4471652 - MLT1A1 LTR MaLR 0 365 25 371 303 50 0 chr21 40436449 40436568 -4471002 + MIR SINE MIR 23 147 -115 274 132 15 15 chr21 40437118 40437186 -4470384 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 2218 125 0 7 chr21 40437686 40437989 -4469581 + AluSx SINE Alu 1 301 -11 227 200 143 0 chr21 40438508 40438578 -4468992 - MER117 DNA MER1_type 0 197 118 246 234 328 0 chr21 40442302 40442430 -4465140 - MER5B DNA MER1_type -3 175 6 198 296 183 9 chr21 40442609 40442639 -4464931 + MER5A DNA MER1_type 47 70 -119 2335 113 0 0 chr21 40442639 40442950 -4464620 + AluY SINE Alu 1 311 0 198 296 183 9 chr21 40442950 40443031 -4464539 + MER5A DNA MER1_type 70 178 -11 221 207 345 0 chr21 40443031 40443118 -4464452 + MER5B DNA MER1_type 1 117 -61 348 278 65 67 chr21 40444461 40444806 -4462764 + L1ME3 LINE L1 1081 1276 -4941 1083 221 29 13 chr21 40444846 40445153 -4462417 + L1ME3 LINE L1 2906 3217 -2998 * 1799 261 60 70 chr21 40445151 40445354 -4462216 + L1ME3 LINE L1 4341 4544 -1671 1969 126 27 7 chr21 40445354 40445647 -4461923 + AluJb SINE Alu 1 299 -13 1799 261 60 70 chr21 40445647 40446373 -4461197 + L1ME3 LINE L1 4544 5261 -954 2360 112 0 0 chr21 40446373 40446685 -4460885 + AluSx SINE Alu 1 312 0 1799 261 60 70 chr21 40446685 40446817 -4460753 + L1ME3 LINE L1 5261 5393 -822 1200 273 22 11 chr21 40446824 40447190 -4460380 + L1ME3 LINE L1 5467 5836 -395 993 257 39 0 chr21 40447207 40447514 -4460056 + L1ME3 LINE L1 5885 6203 -28 561 271 113 10 chr21 40447541 40447744 -4459826 + MIR SINE MIR 20 243 -19 694 138 0 32 chr21 40449025 40449148 -4458422 - Charlie3 DNA MER1_type -8 2702 2584 2191 116 14 0 chr21 40449148 40449440 -4458130 - AluSx SINE Alu -16 296 1 955 90 28 7 chr21 40449477 40449621 -4457949 - L1PA10 LINE L1 0 6168 6022 2594 99 108 24 chr21 40449621 40450047 -4457523 - Charlie3 DNA MER1_type -2243 467 6 386 245 21 0 chr21 40450180 40450274 -4457296 - L2 LINE L2 -10 3303 3208 2060 141 0 3 chr21 40451165 40451462 -4456108 - AluJb SINE Alu -14 298 3 574 240 129 18 chr21 40451492 40451717 -4455853 + L1M4 LINE L1 4763 5012 -1134 6672 237 46 78 chr21 40451725 40453253 -4454317 - L1M4 LINE L1 -857 5289 3714 704 160 0 0 chr21 40453253 40453359 -4454211 - FAM SINE Alu -36 149 44 6672 237 46 78 chr21 40453359 40453868 -4453702 - L1M4 LINE L1 -2432 3714 3190 2287 129 3 0 chr21 40453868 40454179 -4453391 + AluSx SINE Alu 1 312 0 6672 237 46 78 chr21 40454179 40454629 -4452941 - L1M4 LINE L1 -2956 3190 2787 1954 131 33 0 chr21 40454629 40454954 -4452616 + AluSx SINE Alu 2 335 0 6672 237 46 78 chr21 40454954 40455138 -4452432 - L1M4 LINE L1 -3359 2787 2599 861 173 0 7 chr21 40455138 40455277 -4452293 - AluJo SINE Alu -143 169 32 2403 219 82 21 chr21 40455277 40456134 -4451436 - L1MDa LINE L1 -4481 2059 1120 2634 235 53 48 chr21 40456145 40457042 -4450528 - L1MDa LINE L1 -5541 999 25 264 286 12 0 chr21 40458183 40458267 -4449303 - MLT1K LTR MaLR -5 583 499 339 304 70 53 chr21 40458274 40458445 -4449125 - MIR SINE MIR 0 262 89 320 256 68 8 chr21 40458694 40458811 -4448759 - MLT1K LTR MaLR -291 297 174 2283 110 0 3 chr21 40459500 40459809 -4447761 - AluSc SINE Alu -1 308 1 183 266 0 0 chr21 40459998 40460062 -4447508 + CT-rich Low_complexity Low_complexity 1 64 0 1325 184 79 89 chr21 40460062 40460149 -4447421 + MLT1A1 LTR MaLR 1 87 -278 2138 119 0 30 chr21 40460149 40460451 -4447119 + AluSx SINE Alu 1 293 -19 221 0 0 33 chr21 40460455 40460485 -4447085 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1325 184 79 89 chr21 40460485 40460761 -4446809 + MLT1A1 LTR MaLR 90 365 0 6221 219 108 16 chr21 40460761 40461257 -4446313 + MLT1A1-int LTR MaLR 1 450 -1285 2373 63 45 0 chr21 40461257 40461544 -4446026 - AluY SINE Alu -11 300 1 6221 219 108 16 chr21 40461544 40462636 -4444934 + MLT1A1-int LTR MaLR 450 1735 0 1497 204 47 41 chr21 40462636 40462999 -4444571 + MLT1A1 LTR MaLR 1 365 0 422 320 171 47 chr21 40463931 40464465 -4443105 + L3 LINE CR1 842 1463 -114 2613 112 28 11 chr21 40464465 40464823 -4442747 + THE1B LTR MaLR 1 364 0 422 320 171 47 chr21 40464823 40464901 -4442669 + L3 LINE CR1 1463 1530 -47 313 265 184 29 chr21 40465082 40465327 -4442243 + MLT1K LTR MaLR 298 580 -8 2297 66 76 0 chr21 40466231 40466520 -4441050 - AluY SINE Alu 0 311 1 187 197 40 92 chr21 40467049 40467125 -4440445 + L2 LINE L2 3168 3239 -33 291 28 0 0 chr21 40467774 40467810 -4439760 + (CCG)n Simple_repeat Simple_repeat 1 36 0 475 225 54 9 chr21 40469728 40469839 -4437731 + 5S rRNA rRNA 5 120 -1 27 0 0 0 chr21 40469844 40469871 -4437699 + AT_rich Low_complexity Low_complexity 1 27 0 256 321 33 93 chr21 40471125 40471340 -4436230 + MIR SINE MIR 60 261 -1 185 296 37 0 chr21 40471459 40471540 -4436030 + L2 LINE L2 2546 2629 -685 181 258 65 0 chr21 40472198 40472260 -4435310 + L2 LINE L2 3151 3216 -56 219 88 0 0 chr21 40472281 40472315 -4435255 + (TGAG)n Simple_repeat Simple_repeat 3 36 0 276 329 0 89 chr21 40473512 40473658 -4433912 + MIR SINE MIR 51 183 -79 377 339 91 5 chr21 40474522 40474708 -4432862 + MIR3 SINE MIR 5 206 -2 1909 126 53 66 chr21 40476212 40476592 -4430978 - THE1C LTR MaLR 0 375 1 249 237 62 21 chr21 40477072 40477169 -4430401 - MIR SINE MIR -126 136 36 2149 110 0 7 chr21 40477989 40478311 -4429259 + AluSg SINE Alu 1 320 0 221 270 32 0 chr21 40478380 40478443 -4429127 - MIR3 SINE MIR -136 72 8 777 338 36 0 chr21 40481852 40482133 -4425437 - L3 LINE CR1 -2 1575 1285 2575 149 93 13 chr21 40483943 40484500 -4423070 - MER4B LTR ERV1 0 779 1 187 194 179 15 chr21 40486108 40486175 -4421395 + L2 LINE L2 3194 3271 -1 435 293 185 0 chr21 40486408 40486613 -4420957 + MIR SINE MIR 13 255 -7 386 299 172 10 chr21 40487681 40487885 -4419685 + MIR SINE MIR 2 238 -24 306 305 200 5 chr21 40488042 40488232 -4419338 - MIR SINE MIR -8 254 28 217 320 23 62 chr21 40488768 40488896 -4418674 - MIR SINE MIR -65 143 21 2162 106 10 0 chr21 40488998 40489299 -4418271 - AluSx SINE Alu -8 304 1 2123 111 0 0 chr21 40489898 40490186 -4417384 + AluSx SINE Alu 25 312 0 1731 157 31 0 chr21 40490257 40490551 -4417019 + AluJo SINE Alu 2 304 -8 1593 182 13 7 chr21 40490773 40491075 -4416495 + AluJo SINE Alu 1 304 -8 519 281 42 0 chr21 40491372 40491539 -4416031 - MER5A DNA MER1_type -15 174 1 453 36 0 0 chr21 40491987 40492042 -4415528 + (TG)n Simple_repeat Simple_repeat 1 55 0 2579 36 0 3 chr21 40492366 40492670 -4414900 - AluY SINE Alu -8 303 1 270 239 0 15 chr21 40495237 40495304 -4412266 - MIR3 SINE MIR -29 179 114 723 263 112 75 chr21 40496132 40496569 -4411001 + MLT1D LTR MaLR 1 453 -52 503 302 18 67 chr21 40497079 40497160 -4410410 + L1ME3A LINE L1 5697 5780 -390 1674 143 13 60 chr21 40497160 40497474 -4410096 + AluJb SINE Alu 4 302 -10 503 302 18 67 chr21 40497474 40497677 -4409893 + L1ME3A LINE L1 5780 5967 -203 472 224 46 151 chr21 40497923 40498182 -4409388 + MIR SINE MIR 28 259 -3 2257 91 3 0 chr21 40498275 40498571 -4408999 + AluSx SINE Alu 1 297 -15 333 307 12 31 chr21 40499849 40500013 -4407557 - MIR SINE MIR -50 212 53 472 307 17 11 chr21 40503871 40504047 -4403523 + (TG)n Simple_repeat Simple_repeat 1 177 0 200 324 69 28 chr21 40504596 40504741 -4402829 + MIR SINE MIR 35 185 -77 526 348 15 5 chr21 40505543 40505744 -4401826 - MIR SINE MIR -6 256 54 353 244 0 16 chr21 40506387 40506849 -4400721 + (TCCA)n Simple_repeat Simple_repeat 1 454 0 495 189 6 18 chr21 40506851 40507020 -4400550 + CT-rich Low_complexity Low_complexity 3 169 0 195 69 0 0 chr21 40507185 40507214 -4400356 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 2232 68 14 10 chr21 40509376 40509672 -4397898 - AluY SINE Alu -14 297 1 324 358 84 11 chr21 40511276 40511455 -4396115 + MIR SINE MIR 50 241 -21 394 289 96 6 chr21 40511946 40512112 -4395458 + L1ME3A LINE L1 5975 6155 -15 1017 150 0 0 chr21 40512919 40513099 -4394471 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 303 161 25 12 chr21 40513210 40513291 -4394279 + GA-rich Low_complexity Low_complexity 2 83 0 1357 247 51 18 chr21 40513823 40514212 -4393358 + MLT1C LTR MaLR 1 402 -65 2113 100 0 0 chr21 40514571 40514889 -4392681 + AluY SINE Alu 1 318 0 274 352 56 7 chr21 40515323 40515465 -4392105 - MIR3 SINE MIR -40 168 20 418 78 33 115 chr21 40515803 40516573 -4390997 + (GTCTG)n Simple_repeat Simple_repeat 1 707 0 243 0 0 0 chr21 40516914 40516941 -4390629 + (TG)n Simple_repeat Simple_repeat 1 27 0 2372 60 17 0 chr21 40518535 40518833 -4388737 + AluY SINE Alu 1 303 -8 35 95 0 0 chr21 40519054 40519159 -4388411 + AT_rich Low_complexity Low_complexity 1 105 0 2104 113 3 25 chr21 40520151 40520471 -4387099 + AluSq SINE Alu 1 313 0 186 133 0 0 chr21 40521991 40522021 -4385549 + (CCCCG)n Simple_repeat Simple_repeat 5 34 0 234 292 197 36 chr21 40522677 40522814 -4384756 + MIR SINE MIR 104 262 0 2309 91 0 0 chr21 40523027 40523323 -4384247 - AluSg SINE Alu -13 297 2 203 236 113 94 chr21 40524583 40524689 -4382881 - MIR SINE MIR -70 192 85 1475 188 52 11 chr21 40526907 40527275 -4380295 + MLT1B LTR MaLR 1 383 -7 238 307 80 0 chr21 40530426 40530501 -4377069 - L2 LINE L2 0 3272 3192 1928 144 0 25 chr21 40533767 40534087 -4373483 + AluJb SINE Alu 1 312 0 303 93 0 0 chr21 40534325 40534368 -4373202 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 437 205 40 37 chr21 40534765 40534911 -4372659 - MLT1C LTR MaLR -270 197 48 220 319 83 65 chr21 40535994 40536163 -4371407 + L2 LINE L2 3095 3266 -6 2042 136 3 7 chr21 40536977 40537286 -4370284 + AluSx SINE Alu 1 308 -4 230 146 42 0 chr21 40537287 40537335 -4370235 + GA-rich Low_complexity Low_complexity 1 50 0 874 155 185 39 chr21 40537344 40537651 -4369919 - MSTA LTR MaLR -25 350 1 554 307 66 31 chr21 40537700 40537987 -4369583 - MLT1I LTR MaLR -22 387 91 270 194 0 0 chr21 40538370 40538432 -4369138 + (TG)n Simple_repeat Simple_repeat 1 62 0 479 308 60 22 chr21 40540411 40540593 -4366977 - MIR SINE MIR -22 240 52 453 51 51 67 chr21 40541117 40541295 -4366275 + (CA)n Simple_repeat Simple_repeat 1 175 0 274 157 29 29 chr21 40541295 40541365 -4366205 + (CACAC)n Simple_repeat Simple_repeat 1 70 0 539 25 52 80 chr21 40541368 40541733 -4365837 + (CA)n Simple_repeat Simple_repeat 1 354 0 482 54 59 62 chr21 40541761 40542549 -4365021 + (CA)n Simple_repeat Simple_repeat 1 785 0 2259 93 0 31 chr21 40543590 40543912 -4363658 + AluSx SINE Alu 1 312 0 241 330 59 8 chr21 40546429 40546547 -4361023 + MIR3 SINE MIR 81 204 -4 314 340 31 11 chr21 40548394 40548558 -4359012 - MIR SINE MIR -28 180 16 204 121 30 0 chr21 40548827 40548860 -4358710 + (TG)n Simple_repeat Simple_repeat 2 35 0 618 223 0 0 chr21 40548866 40549023 -4358547 + (CA)n Simple_repeat Simple_repeat 2 158 0 22 0 0 0 chr21 40549332 40549354 -4358216 + AT_rich Low_complexity Low_complexity 1 22 0 204 158 0 0 chr21 40552646 40552684 -4354886 + (TA)n Simple_repeat Simple_repeat 2 39 0 343 284 49 71 chr21 40553148 40553369 -4354201 - MIR SINE MIR -28 234 13 2083 105 0 0 chr21 40553917 40554232 -4353338 - AluSg SINE Alu 0 319 5 191 333 37 0 chr21 40555474 40555555 -4352015 + MIR SINE MIR 56 139 -123 324 206 0 0 chr21 40556117 40556190 -4351380 - L1MB7 LINE L1 -14 6170 6098 1260 154 31 23 chr21 40556198 40556457 -4351113 - L1MB7 LINE L1 -57 6127 5867 180 316 18 0 chr21 40556614 40556671 -4350899 - MIR SINE MIR -88 174 117 466 319 103 42 chr21 40557823 40558252 -4349318 - MER20B DNA MER1_type -324 459 5 352 250 122 6 chr21 40558297 40558453 -4349117 - MER90 LTR ERV1 -219 395 222 253 298 123 35 chr21 40559573 40559687 -4347883 + MIR SINE MIR 58 181 -81 597 220 57 68 chr21 40562863 40562923 -4344647 - MER5B DNA MER1_type -3 175 116 1876 142 14 7 chr21 40562923 40563212 -4344358 + AluSx SINE Alu 1 291 -21 597 220 57 68 chr21 40563212 40563328 -4344242 - MER5B DNA MER1_type -62 116 1 461 316 59 7 chr21 40563594 40563746 -4343824 + MIR SINE MIR 46 205 -57 203 53 53 26 chr21 40564671 40564709 -4342861 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1719 148 36 13 chr21 40564711 40565016 -4342554 - AluJb SINE Alu 0 312 1 216 333 56 8 chr21 40565107 40565258 -4342312 - MIR SINE MIR -65 143 22 223 244 85 37 chr21 40566058 40566140 -4341430 - MER5B DNA MER1_type -2 176 91 200 390 89 0 chr21 40566193 40566316 -4341254 - L2 LINE L2 -1 3271 3138 265 226 32 0 chr21 40566360 40566422 -4341148 + MIR SINE MIR 80 143 -119 213 372 90 51 chr21 40567174 40567408 -4340162 - L2 LINE L2 -3 3269 3027 1809 173 0 0 chr21 40567423 40567781 -4339789 - AluSq SINE Alu 0 358 1 806 98 0 0 chr21 40567781 40567883 -4339687 - AluSq/x SINE Alu -177 135 34 1017 186 52 167 chr21 40569047 40569160 -4338410 + MLT1C LTR MaLR 6 130 -337 1460 143 22 5 chr21 40569160 40569383 -4338187 - MER30 DNA MER1_type 0 230 4 1017 186 52 167 chr21 40569383 40569791 -4337779 + MLT1C LTR MaLR 130 467 0 337 238 0 30 chr21 40570334 40570435 -4337135 + MER94 DNA DNA 23 120 -14 576 191 106 26 chr21 40571033 40571222 -4336348 + L1MC5 LINE L1 7707 7910 -51 4380 80 4 0 chr21 40572160 40572712 -4334858 - MER41A LTR ERV1 0 554 1 428 304 62 66 chr21 40572916 40573399 -4334171 + L1M4 LINE L1 4487 4967 -1179 1979 236 53 71 chr21 40573851 40574709 -4332861 + L1MC4a LINE L1 333 1165 -5207 2120 129 0 29 chr21 40574709 40575019 -4332551 + AluSx SINE Alu 1 301 -11 1979 236 53 71 chr21 40575019 40575172 -4332398 + L1MC4a LINE L1 1165 1319 -5053 368 215 33 25 chr21 40575144 40575265 -4332305 + L1MC4a LINE L1 1120 1241 -5143 * 2262 265 66 22 chr21 40575281 40575309 -4332261 + L1MC4a LINE L1 3396 3421 -2961 1948 150 13 16 chr21 40575309 40575622 -4331948 + AluSx SINE Alu 1 312 0 2262 265 66 22 chr21 40575622 40576619 -4330951 + L1MC4a LINE L1 3421 4466 -1916 306 210 89 40 chr21 40576605 40576729 -4330841 - L1M4 LINE L1 -1779 4367 4238 * 507 278 86 26 chr21 40576704 40577181 -4330389 + L1MC4a LINE L1 5322 5821 -577 355 310 168 35 chr21 40577205 40577437 -4330133 + L1MC4a LINE L1 5941 6203 -1841 21 0 0 0 chr21 40577673 40577694 -4329876 + AT_rich Low_complexity Low_complexity 1 21 0 3059 79 107 5 chr21 40577884 40578325 -4329245 + LTR19A LTR ERV1 1 486 0 186 341 47 39 chr21 40579622 40579751 -4327819 - L2 LINE L2 -10 3303 3174 838 248 56 77 chr21 40580244 40580776 -4326794 - MER34 LTR ERV1 -21 521 1 2276 113 0 0 chr21 40581789 40582081 -4325489 - AluSx SINE Alu -20 292 1 224 219 0 0 chr21 40582432 40582473 -4325097 + CT-rich Low_complexity Low_complexity 2 42 0 1165 44 25 0 chr21 40582473 40582631 -4324939 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 2061 120 18 0 chr21 40582633 40582917 -4324653 - AluSq SINE Alu -24 289 1 1121 326 94 65 chr21 40583065 40583543 -4324027 + L1ME1 LINE L1 2322 2784 -3362 2013 142 0 26 chr21 40583543 40583852 -4323718 + AluSx SINE Alu 1 301 -11 1121 326 94 65 chr21 40583852 40584530 -4323040 + L1ME1 LINE L1 2784 3512 -2634 1618 204 15 68 chr21 40584564 40585020 -4322550 - MER101 LTR ERV1 -32 442 11 2719 235 32 37 chr21 40585154 40586366 -4321204 + L1ME1 LINE L1 4975 6334 0 404 273 35 21 chr21 40587814 40587957 -4319613 - MIR SINE MIR -37 225 81 1881 256 71 8 chr21 40588220 40588393 -4319177 - MER82 DNA MER2_type 0 653 492 1894 141 3 23 chr21 40588393 40588692 -4318878 - AluY SINE Alu -18 293 1 1881 256 71 8 chr21 40588692 40589112 -4318458 - MER82 DNA MER2_type -161 492 23 5939 169 58 15 chr21 40589177 40589424 -4318146 - Tigger3b DNA MER2_type -1797 1231 996 2266 115 7 3 chr21 40589424 40589728 -4317842 + AluSx SINE Alu 1 305 -7 5939 169 58 15 chr21 40589728 40589985 -4317585 - Tigger3b DNA MER2_type -2032 996 751 2274 123 3 0 chr21 40589985 40590294 -4317276 - AluSg SINE Alu 0 310 1 5939 169 58 15 chr21 40590294 40590969 -4316601 - Tigger3b DNA MER2_type -2277 751 1 849 83 0 0 chr21 40591081 40591189 -4316381 - AluSc SINE Alu -15 294 187 294 290 83 53 chr21 40591260 40591303 -4316267 - MIR SINE MIR -12 250 210 1918 128 36 4 chr21 40591303 40591628 -4315942 - AluJb SINE Alu 0 334 1 294 290 83 53 chr21 40591628 40591752 -4315818 - MIR SINE MIR -52 210 77 218 304 0 52 chr21 40592036 40592171 -4315399 + GA-rich Low_complexity Low_complexity 4 131 0 2775 178 24 13 chr21 40593398 40593950 -4313620 + L1PB4 LINE L1 5597 6154 -2 2122 114 3 32 chr21 40594448 40594756 -4312814 + AluSx SINE Alu 2 300 -12 186 308 0 0 chr21 40594761 40594868 -4312702 + (CA)n Simple_repeat Simple_repeat 1 107 0 231 242 30 0 chr21 40595834 40595900 -4311670 - MARNA DNA Mariner -110 476 409 237 179 89 0 chr21 40596480 40596536 -4311034 + MIR SINE MIR 90 150 -58 21 0 0 0 chr21 40596984 40597005 -4310565 + AT_rich Low_complexity Low_complexity 1 21 0 201 251 53 35 chr21 40597278 40597449 -4310121 + (CCTAG)n Simple_repeat Simple_repeat 4 177 0 304 219 58 35 chr21 40597487 40597844 -4309726 + (CCTAG)n Simple_repeat Simple_repeat 1 365 0 332 203 45 40 chr21 40597878 40598055 -4309515 + (CCTAG)n Simple_repeat Simple_repeat 2 179 0 319 227 40 34 chr21 40598099 40598275 -4309295 + (CCTAG)n Simple_repeat Simple_repeat 1 177 0 1880 169 0 19 chr21 40598795 40599103 -4308467 + AluJb SINE Alu 1 302 -10 214 209 0 0 chr21 40601417 40601460 -4306110 + MER91 DNA MER1_type 95 137 -3 194 357 85 45 chr21 40601591 40602014 -4305556 + L2 LINE L2 578 1017 -2297 1080 302 112 59 chr21 40602273 40602897 -4304673 + L1MEc LINE L1 36 626 -5770 1849 192 39 16 chr21 40602897 40603278 -4304292 - MLT1B LTR MaLR 0 390 1 1080 302 112 59 chr21 40603278 40604019 -4303551 + L1MEc LINE L1 626 1473 -4923 2357 124 57 38 chr21 40604024 40604442 -4303128 + MSTC LTR MaLR 3 428 0 416 215 21 0 chr21 40604612 40604705 -4302865 + MER58B DNA MER1_type 230 324 -17 1373 147 62 0 chr21 40604709 40604920 -4302650 + AluSx SINE Alu 1 224 -88 22 0 0 0 chr21 40604950 40604972 -4302598 + AT_rich Low_complexity Low_complexity 1 22 0 1909 228 8 32 chr21 40605099 40605169 -4302401 + LTR40b LTR ERVL 1 71 -391 2635 214 22 2 chr21 40605169 40605678 -4301892 + LTR53 LTR ERVL 1 519 0 1909 228 8 32 chr21 40605678 40606080 -4301490 + LTR40b LTR ERVL 71 462 0 378 213 0 0 chr21 40607437 40607512 -4300058 + MLT1B LTR MaLR 35 109 -281 1001 191 45 0 chr21 40607515 40607714 -4299856 + MER57A LTR ERV1 1 208 -195 * 1408 190 14 21 chr21 40607687 40607952 -4299618 + MER57A LTR ERV1 122 387 -16 2061 110 14 0 chr21 40607952 40608297 -4299273 - AluSp SINE Alu 0 349 1 1408 190 14 21 chr21 40608297 40608314 -4299256 + MER57A LTR ERV1 387 403 0 621 181 30 48 chr21 40608314 40608476 -4299094 + MLT1B LTR MaLR 109 267 -123 1356 170 5 0 chr21 40608527 40608739 -4298831 - AluJb SINE Alu -13 299 87 227 364 0 0 chr21 40610547 40610679 -4296891 + (CACAC)n Simple_repeat Simple_repeat 1 132 0 2065 108 44 20 chr21 40611176 40611473 -4296097 + AluSx SINE Alu 1 304 -8 2219 108 0 3 chr21 40612387 40612673 -4294897 + AluSx SINE Alu 14 298 -14 213 200 0 67 chr21 40613808 40613868 -4293702 + G-rich Low_complexity Low_complexity 2 57 0 228 234 47 0 chr21 40614819 40614883 -4292687 + MIR SINE MIR 185 251 -11 * 245 204 20 0 chr21 40614838 40614887 -4292683 + L2 LINE L2 3251 3300 -13 2062 118 0 21 chr21 40615584 40615871 -4291699 + AluSx SINE Alu 1 281 -31 317 304 26 98 chr21 40615990 40616296 -4291274 + L2 LINE L2 3029 3312 -1 390 345 15 54 chr21 40616717 40616920 -4290650 + L1ME LINE L1 5542 5736 -434 895 170 29 23 chr21 40617005 40617176 -4290394 + MER2 DNA MER2_type 1 172 -173 2420 92 0 0 chr21 40617276 40617569 -4290001 - AluSx SINE Alu -19 293 1 233 333 0 0 chr21 40617578 40617644 -4289926 + MER2 DNA MER2_type 280 345 0 282 345 9 0 chr21 40618360 40618470 -4289100 + MIR3 SINE MIR 83 193 -15 2221 126 0 0 chr21 40620828 40621130 -4286440 + AluSx SINE Alu 1 302 -10 236 318 45 18 chr21 40622096 40622206 -4285364 + MER5A DNA MER1_type 77 189 0 863 192 23 23 chr21 40623085 40623304 -4284266 + L1MB5 LINE L1 5949 6167 -7 924 214 10 19 chr21 40623317 40623523 -4284047 - MER6B DNA MER2_type -6 204 1 1251 231 64 52 chr21 40625649 40626146 -4281424 + MLT1D LTR MaLR 3 505 0 644 194 130 81 chr21 40626886 40627231 -4280339 + MLT1C LTR MaLR 1 362 -105 183 42 0 0 chr21 40627258 40627282 -4280288 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1621 164 29 18 chr21 40627290 40627421 -4280149 - AluJo SINE Alu -34 278 150 2147 127 0 3 chr21 40627421 40627736 -4279834 - AluSx SINE Alu 0 314 1 1621 164 29 18 chr21 40627736 40627878 -4279692 - AluJo SINE Alu -162 150 1 860 156 0 0 chr21 40627878 40628013 -4279557 - AluJo SINE Alu -177 135 1 275 266 0 0 chr21 40628013 40628077 -4279493 + MLT1C LTR MaLR 439 502 -3 676 274 88 5 chr21 40629003 40629207 -4278363 - MER58A DNA MER1_type -3 221 1 1944 202 87 81 chr21 40629992 40630587 -4276983 + L1MDb LINE L1 535 1133 -5276 204 334 79 25 chr21 40633335 40633520 -4274050 + MIR SINE MIR 20 212 -50 441 145 0 0 chr21 40633573 40633649 -4273921 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 189 284 0 95 chr21 40634703 40634798 -4272772 + L3b LINE CR1 1252 1337 -246 341 305 161 0 chr21 40635205 40635323 -4272247 - MIR SINE MIR -98 164 28 270 0 0 0 chr21 40635328 40635358 -4272212 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 236 29 0 29 chr21 40635914 40635948 -4271622 + (TG)n Simple_repeat Simple_repeat 2 34 0 392 261 111 13 chr21 40636734 40636887 -4270683 + MIR SINE MIR 68 235 -27 1652 173 41 100 chr21 40638815 40638996 -4268574 + MLT1C LTR MaLR 1 191 -276 2310 123 0 0 chr21 40638996 40639305 -4268265 + AluSq SINE Alu 1 309 -4 1652 173 41 100 chr21 40639305 40639615 -4267955 + MLT1C LTR MaLR 191 463 -4 773 171 0 8 chr21 40639767 40639896 -4267674 - FLAM_C SINE Alu -5 128 1 2047 248 15 8 chr21 40639919 40640398 -4267172 + LTR40a LTR ERVL 35 516 -3 243 294 88 20 chr21 40640586 40640688 -4266882 - MIR SINE MIR -69 139 31 245 318 24 0 chr21 40641036 40641121 -4266449 + L2 LINE L2 3227 3313 0 264 197 42 0 chr21 40641522 40641593 -4265977 + L1P LINE L1 5329 5402 -752 1638 100 5 5 chr21 40641595 40641815 -4265755 + AluSg/x SINE Alu 81 300 -10 377 331 16 11 chr21 40641996 40642180 -4265390 + L1ME4a LINE L1 5617 5801 -320 1130 196 10 19 chr21 40642221 40642430 -4265140 - MER58A DNA MER1_type -16 208 2 495 234 138 58 chr21 40642444 40642705 -4264865 + L1ME4a LINE L1 5836 6117 -4 363 363 72 0 chr21 40642730 40642923 -4264647 + L1ME4a LINE L1 5649 5855 -266 189 0 0 0 chr21 40644220 40644241 -4263329 + (A)n Simple_repeat Simple_repeat 1 21 0 288 271 167 0 chr21 40646040 40646136 -4261434 - L2 LINE L2 0 3313 3202 541 97 0 0 chr21 40647819 40647910 -4259660 + L1MA9 LINE L1 5851 5941 -229 324 0 0 0 chr21 40647910 40647946 -4259624 + (A)n Simple_repeat Simple_repeat 1 36 0 956 234 51 33 chr21 40647946 40648279 -4259291 + L1MA9 LINE L1 5936 6274 -38 2193 82 18 4 chr21 40648287 40648604 -4258966 - AluY SINE Alu 0 321 1 2138 129 17 0 chr21 40648629 40648924 -4258646 + AluSx SINE Alu 1 300 -12 426 279 29 7 chr21 40648950 40649086 -4258484 + L1ME3A LINE L1 4031 4169 -1977 1709 225 100 28 chr21 40649088 40649818 -4257752 - L1ME LINE L1 -442 5722 4912 1610 170 43 0 chr21 40649818 40650094 -4257476 - AluJo SINE Alu -11 301 14 1709 225 100 28 chr21 40650094 40650188 -4257382 - L1ME LINE L1 -1252 4912 4826 1248 264 109 30 chr21 40650279 40651072 -4256498 + L1ME3A LINE L1 4751 5800 -370 2145 105 6 35 chr21 40651072 40651385 -4256185 - AluSx SINE Alu -8 304 1 1248 264 109 30 chr21 40651385 40651656 -4255914 + L1ME3A LINE L1 5800 6048 -122 505 121 160 146 chr21 40651661 40651867 -4255703 - MER20 DNA MER1_type 0 219 11 271 225 14 28 chr21 40651899 40651970 -4255600 + L1ME3A LINE L1 6077 6146 -24 229 125 50 0 chr21 40652832 40652872 -4254698 - Alu SINE Alu -103 72 31 610 88 167 0 chr21 40652891 40652993 -4254577 - MER30 DNA MER1_type -56 174 56 194 270 79 0 chr21 40654282 40654345 -4253225 - L2 LINE L2 -64 3208 3141 268 287 57 60 chr21 40656301 40656566 -4251004 + L1ME3 LINE L1 5638 5901 -261 398 321 93 45 chr21 40656773 40657256 -4250314 - L1ME4a LINE L1 -226 5895 5390 948 125 0 0 chr21 40657306 40657503 -4250067 + AluSg/x SINE Alu 156 352 0 376 318 63 63 chr21 40658311 40658610 -4248960 + L2 LINE L2 2969 3267 -5 275 138 0 15 chr21 40659329 40659394 -4248176 + (CA)n Simple_repeat Simple_repeat 1 64 0 446 235 0 6 chr21 40659411 40659577 -4247993 + (CA)n Simple_repeat Simple_repeat 2 166 0 566 233 2 6 chr21 40659594 40660134 -4247436 + (CA)n Simple_repeat Simple_repeat 1 537 0 242 381 45 8 chr21 40662461 40662595 -4244975 + MIR3 SINE MIR 11 149 -59 205 218 36 18 chr21 40662973 40663028 -4244542 - MIR SINE MIR -65 143 88 748 244 97 9 chr21 40663029 40663400 -4244170 + MLT1C LTR MaLR 1 356 -40 2269 77 14 0 chr21 40665203 40665490 -4242080 + AluY SINE Alu 1 291 -20 2218 109 13 3 chr21 40665691 40665994 -4241576 + AluSx SINE Alu 1 306 -6 28 29 0 0 chr21 40666042 40666077 -4241493 + AT_rich Low_complexity Low_complexity 1 35 0 475 90 0 15 chr21 40666077 40666144 -4241426 - U6 snRNA snRNA -41 66 1 2378 106 0 3 chr21 40666421 40666732 -4240838 - AluSg SINE Alu 0 310 1 864 264 74 0 chr21 40667520 40667751 -4239819 - MLT1E1 LTR MaLR -2 652 405 1217 254 27 30 chr21 40667797 40668240 -4239330 - MLT1-int LTR MaLR -765 606 42 1836 174 71 0 chr21 40668240 40668580 -4238990 + MER47A DNA MER2_type 1 364 -2 1217 254 27 30 chr21 40668580 40668619 -4238951 - MLT1-int LTR MaLR -1329 42 4 205 212 26 18 chr21 40668666 40668692 -4238878 + (TA)n Simple_repeat Simple_repeat 2 26 -89 1256 214 73 25 chr21 40668692 40669019 -4238551 + MER2 DNA MER2_type 1 343 -1 205 212 26 18 chr21 40669019 40669105 -4238465 + (TA)n Simple_repeat Simple_repeat 26 115 0 550 252 7 48 chr21 40669339 40669486 -4238084 - MLT1E3 LTR MaLR -432 192 52 635 252 14 0 chr21 40669496 40669635 -4237935 - MLT2F LTR ERVL -522 141 1 572 238 44 12 chr21 40670916 40671118 -4236452 - MIR SINE MIR -32 230 22 499 262 64 73 chr21 40671178 40671586 -4235984 + L1MC4a LINE L1 5770 6173 -1635 286 327 9 9 chr21 40671852 40671962 -4235608 - MIR3 SINE MIR -7 201 92 1893 194 18 3 chr21 40673263 40673645 -4233925 + MLT1B LTR MaLR 3 390 0 1244 167 16 25 chr21 40674519 40674764 -4232806 - MLT2D LTR ERVL -19 395 153 782 175 12 25 chr21 40674878 40675038 -4232532 - MLT2D LTR ERVL -256 158 1 277 253 0 8 chr21 40676108 40676188 -4231382 - MIR SINE MIR -50 158 81 1750 193 6 8 chr21 40676434 40676786 -4230784 + MLT1B LTR MaLR 1 351 -39 533 173 19 19 chr21 40677138 40677242 -4230328 - MLT2D LTR ERVL -275 139 36 1177 261 152 20 chr21 40677440 40677880 -4229690 + MLT1D LTR MaLR 8 505 0 380 242 87 40 chr21 40681559 40681708 -4225862 + HAL1b LINE L1 245 400 -948 500 242 38 8 chr21 40683585 40683717 -4223853 - MIR SINE MIR -80 182 47 182 296 113 0 chr21 40683933 40684004 -4223566 - MIR3 SINE MIR -30 178 100 813 190 65 91 chr21 40684966 40685229 -4222341 - MLT1B LTR MaLR -132 258 3 1499 218 84 51 chr21 40685389 40685963 -4221607 - MLT1E3 LTR MaLR -26 598 1 807 292 111 40 chr21 40686698 40687304 -4220266 - L2 LINE L2 -1736 1578 930 771 55 59 9 chr21 40688195 40688419 -4219151 + (CA)n Simple_repeat Simple_repeat 1 235 0 707 55 73 6 chr21 40688437 40688602 -4218968 + (CA)n Simple_repeat Simple_repeat 2 177 0 264 59 0 0 chr21 40689605 40689639 -4217931 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1870 143 128 21 chr21 40691193 40691614 -4215956 - MER31B LTR ERV1 0 466 1 223 196 22 0 chr21 40695054 40695100 -4212470 + A-rich Low_complexity Low_complexity 5 51 0 588 206 45 19 chr21 40695287 40695442 -4212128 - MER20 DNA MER1_type -47 172 14 228 265 0 29 chr21 40696270 40696338 -4211232 - MLT1D LTR MaLR -2 503 438 630 233 0 0 chr21 40696340 40696520 -4211050 + (CA)n Simple_repeat Simple_repeat 1 180 0 416 235 7 0 chr21 40696532 40696668 -4210902 + (CA)n Simple_repeat Simple_repeat 1 137 0 1355 184 112 37 chr21 40696704 40697052 -4210518 - MLT1D LTR MaLR -131 374 1 2358 94 3 3 chr21 40698783 40699091 -4208479 + AluSc SINE Alu 1 308 -1 225 128 26 0 chr21 40699660 40699699 -4207871 + MLT1B LTR MaLR 5 44 -346 571 55 0 0 chr21 40699701 40699774 -4207796 + MSTA LTR MaLR 1 73 -355 520 110 24 0 chr21 40699838 40699920 -4207650 - LTR47A LTR ERVL -319 133 50 581 196 196 0 chr21 40699924 40700072 -4207498 - LTR47A LTR ERVL -163 289 113 327 227 86 62 chr21 40700105 40700233 -4207337 + L1 LINE L1 4882 5012 -1134 2436 97 3 0 chr21 40700248 40700557 -4207013 + AluSx SINE Alu 1 310 -2 974 197 22 40 chr21 40700871 40701094 -4206476 - MER20 DNA MER1_type 0 219 1 354 273 65 29 chr21 40701995 40702134 -4205436 + MER63A DNA MER1_type 67 210 0 300 277 0 0 chr21 40703739 40703822 -4203748 + MER5A DNA MER1_type 4 86 -103 746 226 32 119 chr21 40704239 40704624 -4202946 - MLT2B1 LTR ERVL -73 447 1 3243 101 12 30 chr21 40704730 40705223 -4202347 - MER1A DNA MER1_type 0 529 46 315 311 87 41 chr21 40705426 40705622 -4201948 - L2 LINE L2 -2 3311 3107 897 225 32 46 chr21 40705704 40705895 -4201675 + L1ME2 LINE L1 5879 6066 -98 2184 113 33 30 chr21 40705895 40706258 -4201312 - THE1B LTR MaLR 0 364 1 897 225 32 46 chr21 40706258 40706346 -4201224 + L1ME2 LINE L1 6066 6154 -10 2344 82 0 0 chr21 40706771 40707087 -4200483 - AluY SINE Alu 0 316 1 4883 76 6 1 chr21 40707466 40708123 -4199447 - PABL_A LTR ERV1 0 660 1 660 217 114 0 chr21 40708470 40708636 -4198934 + MER5A DNA MER1_type 4 188 -1 180 152 0 0 chr21 40708791 40708824 -4198746 + (TG)n Simple_repeat Simple_repeat 2 34 0 2120 100 153 6 chr21 40709781 40710153 -4197417 + MSTA LTR MaLR 12 428 0 260 295 0 0 chr21 40710260 40710321 -4197249 + C-rich Low_complexity Low_complexity 1 61 0 243 65 0 0 chr21 40711237 40711268 -4196302 + LTR33 LTR ERVL 487 517 -4 203 347 53 0 chr21 40711276 40711351 -4196219 - L2 LINE L2 -98 3174 3096 273 254 0 0 chr21 40712240 40712307 -4195263 + L2 LINE L2 3247 3313 0 1876 163 60 13 chr21 40712340 40712721 -4194849 - MER57A LTR ERV1 -4 399 1 1883 170 6 3 chr21 40713177 40713488 -4194082 + AluJo SINE Alu 1 312 0 2960 164 9 8 chr21 40713520 40714050 -4193520 - LTR26B LTR ERV1 0 531 1 1965 200 77 109 chr21 40714442 40714725 -4192845 + LTR8A LTR ERV1 1 292 -435 2845 19 10 0 chr21 40714725 40715036 -4192534 + AluYb8 SINE Alu 1 314 -4 1965 200 77 109 chr21 40715036 40715503 -4192067 + LTR8A LTR ERV1 292 727 0 906 266 81 36 chr21 40715727 40716084 -4191486 + L1ME LINE L1 28 400 -5670 440 236 69 7 chr21 40716394 40716538 -4191032 + L1M LINE L1 5262 5414 -764 * 474 246 60 100 chr21 40716534 40716904 -4190666 + L1MC4 LINE L1 7686 8040 -2 386 322 18 0 chr21 40716923 40717094 -4190476 + L1MC4 LINE L1 6893 7066 -976 278 271 135 31 chr21 40717126 40717318 -4190252 + L1MC5 LINE L1 6975 7186 -775 2811 269 84 25 chr21 40717653 40718293 -4189277 + MER69B DNA AcHobo 8 609 -1917 1782 126 79 7 chr21 40718293 40718570 -4189000 - AluJo SINE Alu -15 297 1 2811 269 84 25 chr21 40718570 40718582 -4188988 + MER69B DNA AcHobo 609 619 -1907 2343 101 0 0 chr21 40718582 40718879 -4188691 - AluSx SINE Alu -15 297 1 2811 269 84 25 chr21 40718879 40719320 -4188250 + MER69B DNA AcHobo 619 1167 -59 2438 79 0 0 chr21 40719350 40719642 -4187928 + AluSq SINE Alu 1 292 -21 721 189 8 0 chr21 40719646 40719768 -4187802 - FLAM_A SINE Alu -10 123 1 1588 230 59 24 chr21 40719794 40720220 -4187350 - LTR47B LTR ERVL 0 443 3 1041 182 0 0 chr21 40721152 40721322 -4186248 - AluJb SINE Alu -9 303 134 2317 114 3 0 chr21 40721760 40722067 -4185503 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr21 40722120 40722141 -4185429 + AT_rich Low_complexity Low_complexity 1 21 0 552 206 81 6 chr21 40722298 40722458 -4185112 - MER20 DNA MER1_type -17 202 31 1968 92 18 22 chr21 40723862 40724135 -4183435 + AluSx SINE Alu 27 298 -14 235 256 25 91 chr21 40725331 40725452 -4182118 + LTR16A LTR ERVL 331 443 -7 30 27 0 0 chr21 40726441 40726478 -4181092 + AT_rich Low_complexity Low_complexity 1 37 0 863 222 24 0 chr21 40726934 40727101 -4180469 - MER5A DNA MER1_type -4 185 15 1325 190 18 2 chr21 40727127 40727673 -4179897 + L1MB4 LINE L1 5520 6152 -28 315 0 0 0 chr21 40728278 40728313 -4179257 + (CA)n Simple_repeat Simple_repeat 2 36 0 2523 78 7 0 chr21 40728911 40729218 -4178352 + AluSp SINE Alu 1 309 -4 187 337 45 0 chr21 40729259 40729348 -4178222 - L2 LINE L2 -2754 560 468 2551 144 23 30 chr21 40729569 40729998 -4177572 + MSTB LTR MaLR 1 426 0 2246 114 3 16 chr21 40730618 40730934 -4176636 - AluSx SINE Alu 0 312 1 566 343 131 26 chr21 40731518 40731900 -4175670 - L1ME4a LINE L1 -88 6033 5612 335 306 75 27 chr21 40732122 40732269 -4175301 - L1ME4a LINE L1 -885 5261 5108 244 333 67 10 chr21 40732302 40732602 -4174968 - L1ME4a LINE L1 -1088 5058 4740 450 295 67 28 chr21 40732617 40732972 -4174598 + L1ME LINE L1 5328 5578 -584 370 320 76 10 chr21 40735164 40735361 -4172209 + MER69 DNA AcHobo 129 338 -2188 1806 217 131 15 chr21 40735681 40736290 -4171280 + MER69 DNA AcHobo 1845 2524 -2 196 296 122 0 chr21 40736408 40736506 -4171064 - L2 LINE L2 -2 3311 3202 628 214 121 0 chr21 40736854 40736994 -4170576 + MER63A DNA MER1_type 54 210 0 1029 156 0 2 chr21 40737543 40737984 -4169586 + (TTGG)n Simple_repeat Simple_repeat 1 619 0 347 314 51 22 chr21 40738269 40738406 -4169164 - MIR SINE MIR -67 141 1 1814 244 110 55 chr21 40739186 40739895 -4167675 + MER21B LTR ERV1 1 748 -115 317 270 239 5 chr21 40740410 40740580 -4166990 - MIR SINE MIR -12 250 42 197 274 20 0 chr21 40741652 40741703 -4165867 - MIR SINE MIR 0 262 211 1777 174 24 3 chr21 40742305 40742593 -4164977 - AluJb SINE Alu -15 297 4 33 25 0 0 chr21 40742787 40742827 -4164743 + AT_rich Low_complexity Low_complexity 1 40 0 535 225 89 24 chr21 40743212 40743256 -4164314 - LTR16A1 LTR ERVL 0 457 417 2398 58 14 3 chr21 40743256 40743551 -4164019 - AluSq SINE Alu -15 298 1 535 225 89 24 chr21 40743551 40743719 -4163851 - LTR16A1 LTR ERVL -40 417 231 316 219 94 94 chr21 40746023 40746183 -4161387 + L1ME4a LINE L1 5955 6114 -7 279 262 36 24 chr21 40746302 40746386 -4161184 - MIR SINE MIR -1 261 177 1909 112 33 27 chr21 40746432 40746763 -4160807 + MER49 LTR ERV1 1 333 -590 * 2472 148 63 9 chr21 40746741 40747199 -4160371 + LTR44 LTR ERV1 37 519 0 253 276 161 0 chr21 40747202 40747289 -4160281 - MIR SINE MIR -154 108 8 305 240 264 8 chr21 40748949 40749078 -4158492 + MIR SINE MIR 101 262 0 241 250 0 0 chr21 40749649 40749701 -4157869 + MIR SINE MIR 205 256 -6 2375 89 0 25 chr21 40749980 40750294 -4157276 + AluSq SINE Alu 1 306 -7 324 307 136 31 chr21 40750790 40751077 -4156493 - L1ME LINE L1 -422 5699 5383 208 403 16 8 chr21 40751153 40751282 -4156288 + L2 LINE L2 2935 3064 -208 321 252 202 4 chr21 40751445 40751707 -4155863 - L1ME4a LINE L1 -34 6087 5774 1954 140 13 10 chr21 40751800 40752100 -4155470 - AluJb SINE Alu -11 301 1 956 314 95 30 chr21 40753337 40753989 -4153581 + L2 LINE L2 2328 3032 -240 222 310 28 0 chr21 40754499 40754570 -4153000 - MIR SINE MIR -117 145 73 443 263 0 44 chr21 40755064 40755178 -4152392 - L2 LINE L2 -13 3300 3192 264 302 48 71 chr21 40755227 40755353 -4152217 - MIR3 SINE MIR -76 132 10 2102 135 3 3 chr21 40755437 40755734 -4151836 - AluSx SINE Alu -15 297 1 2372 158 45 12 chr21 40756082 40756500 -4151070 - MSTB1 LTR MaLR 0 432 1 2463 92 0 0 chr21 40756674 40756980 -4150590 - AluSx SINE Alu -6 306 1 385 217 104 50 chr21 40757591 40757812 -4149758 - HAL1 LINE L1 -3 2504 2272 210 208 56 69 chr21 40758138 40758210 -4149360 + L2 LINE L2 3181 3251 -21 1944 103 4 4 chr21 40758625 40758877 -4148693 - AluSc SINE Alu -57 252 1 3403 185 69 16 chr21 40758884 40759905 -4147665 + L1M1 LINE L1 3351 4425 -3140 2792 153 20 33 chr21 40759905 40760055 -4147515 + L1MA9 LINE L1 5767 5917 -395 1742 174 6 34 chr21 40760055 40760376 -4147194 + AluJo SINE Alu 1 312 0 2792 153 20 33 chr21 40760376 40760773 -4146797 + L1MA9 LINE L1 5917 6307 -5 231 295 111 32 chr21 40760877 40761067 -4146503 - L2 LINE L2 -555 2759 2555 46 92 0 0 chr21 40762229 40762359 -4145211 + GC_rich Low_complexity Low_complexity 1 130 0 44 88 0 0 chr21 40762420 40762534 -4145036 + GC_rich Low_complexity Low_complexity 1 114 0 183 42 0 0 chr21 40763437 40763461 -4144109 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 250 83 104 0 chr21 40764223 40764271 -4143299 - L1PA12 LINE L1 0 6168 6116 2151 135 0 0 chr21 40764313 40764610 -4142960 - AluSx SINE Alu -15 297 1 189 339 0 0 chr21 40765555 40765620 -4141950 - L2 LINE L2 -5 3267 3203 515 262 87 23 chr21 40765672 40765844 -4141726 - MIR SINE MIR 0 262 80 429 218 113 50 chr21 40767645 40767913 -4139657 - MER34 LTR ERV1 -2 738 387 1458 218 38 95 chr21 40768386 40768509 -4139061 - L1MC4 LINE L1 -2 8040 7911 249 83 0 0 chr21 40768509 40768545 -4139025 + (TG)n Simple_repeat Simple_repeat 2 37 0 1458 218 38 95 chr21 40768545 40769069 -4138501 - L1MC4 LINE L1 -131 7911 7429 909 254 39 20 chr21 40769045 40769186 -4138384 + L1MC4a LINE L1 6474 6611 -1300 * 252 59 0 0 chr21 40769186 40769220 -4138350 + (TG)n Simple_repeat Simple_repeat 2 35 0 909 254 39 20 chr21 40769220 40769448 -4138122 + L1MC4a LINE L1 6611 6936 -975 854 285 150 9 chr21 40769428 40769867 -4137703 + L1MC4 LINE L1 6958 7458 -584 * 1451 241 89 7 chr21 40770389 40770816 -4136754 - MLT1C LTR MaLR 0 467 6 2785 226 90 10 chr21 40773316 40774113 -4133457 + MER21B LTR ERV1 2 862 -1 2224 108 3 10 chr21 40777095 40777401 -4130169 + AluSq SINE Alu 1 304 -9 312 344 107 41 chr21 40777444 40777735 -4129835 + L1 LINE L1 4518 4827 -1319 228 194 142 52 chr21 40777760 40777841 -4129729 + L1 LINE L1 4903 4975 -1171 1982 126 56 0 chr21 40777841 40778127 -4129443 + AluSq SINE Alu 3 304 -9 228 194 142 52 chr21 40778127 40778179 -4129391 + L1 LINE L1 4975 5048 -1098 555 336 106 58 chr21 40778213 40778799 -4128771 + L1MC4a LINE L1 5306 5919 -1889 540 0 0 0 chr21 40779147 40779207 -4128363 + (CA)n Simple_repeat Simple_repeat 2 61 0 208 381 100 6 chr21 40780569 40780729 -4126841 - MIR SINE MIR -78 184 10 1052 294 60 42 chr21 40782509 40783039 -4124531 - L1ME3 LINE L1 0 6162 5623 788 233 48 10 chr21 40784693 40784899 -4122671 + MIR SINE MIR 14 227 -35 741 222 67 110 chr21 40785051 40785497 -4122073 - MSTC LTR MaLR 0 428 2 1203 178 14 0 chr21 40786029 40786242 -4121328 + MER20 DNA MER1_type 4 219 0 218 301 24 12 chr21 40786724 40786807 -4120763 + MIR3 SINE MIR 85 168 -40 2239 178 24 7 chr21 40788549 40788966 -4118604 - LTR42 LTR ERVL 0 495 72 2102 120 9 29 chr21 40789539 40789880 -4117690 - MER1B DNA MER1_type 0 337 4 1881 185 3 3 chr21 40790291 40790593 -4116977 - AluJb SINE Alu -10 302 1 198 314 35 0 chr21 40791260 40791346 -4116224 + MER5A DNA MER1_type 21 109 -80 247 349 12 0 chr21 40794287 40794373 -4113197 + L2 LINE L2 1200 1286 -2028 411 285 17 34 chr21 40795370 40795549 -4112021 - L1MA9 LINE L1 -38 6274 6099 564 306 111 39 chr21 40796515 40797311 -4110259 + L2 LINE L2 1925 2777 -537 577 208 50 85 chr21 40798422 40798682 -4108888 - L1MC5 LINE L1 -51 7910 7660 * 4394 239 54 0 chr21 40798677 40799869 -4107701 + L1M4 LINE L1 3144 4399 -1747 1557 144 49 10 chr21 40799869 40800174 -4107396 + L1MB8 LINE L1 5861 6177 -1 582 258 73 56 chr21 40800179 40800350 -4107220 - L1MC5 LINE L1 -298 7663 7496 311 0 26 0 chr21 40800350 40800389 -4107181 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 582 258 73 56 chr21 40800389 40800574 -4106996 - L1MC5 LINE L1 -465 7496 7301 487 292 41 31 chr21 40800852 40801047 -4106523 - MLT1J LTR MaLR -3 508 312 346 227 0 0 chr21 40801057 40801132 -4106438 + L2 LINE L2 3239 3313 0 700 249 144 0 chr21 40801146 40801347 -4106223 - MLT1J LTR MaLR -217 294 65 198 217 117 17 chr21 40802895 40802955 -4104615 - L2 LINE L2 -1 3271 3206 207 264 0 19 chr21 40803249 40803302 -4104268 - MIR SINE MIR -117 145 94 2343 104 0 7 chr21 40803531 40803839 -4103731 - AluSx SINE Alu -6 306 1 205 259 0 19 chr21 40805870 40805924 -4101646 + MER5B DNA MER1_type 126 178 0 996 186 116 0 chr21 40806493 40806692 -4100878 - AluJo SINE Alu -4 308 87 358 243 123 85 chr21 40806878 40807195 -4100375 - L1ME4a LINE L1 -20 6101 5773 2432 88 0 10 chr21 40808145 40808450 -4099120 + AluSx SINE Alu 1 302 -10 270 292 96 40 chr21 40809422 40809648 -4097922 + MIR SINE MIR 8 249 -13 304 269 92 17 chr21 40810258 40810377 -4097193 + Charlie8 DNA MER1_type 101 228 -2189 1470 181 30 40 chr21 40812655 40812958 -4094612 + AluJo SINE Alu 1 300 -12 243 211 42 0 chr21 40813711 40813782 -4093788 + MIR SINE MIR 71 144 -118 252 186 0 0 chr21 40817228 40817271 -4090299 + MER58C DNA MER1_type 1 43 -172 220 288 40 0 chr21 40817929 40818054 -4089516 + L2 LINE L2 2872 3001 -312 278 320 72 41 chr21 40818063 40818354 -4089216 + L2 LINE L2 2950 3249 -64 325 287 196 5 chr21 40819993 40820202 -4087368 - HAL1 LINE L1 0 2507 2259 758 298 191 17 chr21 40820487 40821179 -4086391 - HAL1 LINE L1 -688 1819 1008 857 244 70 23 chr21 40822469 40822847 -4084723 - L1MD3 LINE L1 -2 8037 7657 1148 162 88 0 chr21 40822981 40823197 -4084373 - MER46A DNA MER2_type 0 236 2 537 271 102 0 chr21 40823686 40823863 -4083707 + MIR SINE MIR 6 200 -62 932 295 168 8 chr21 40824529 40824898 -4082672 + L1MEd LINE L1 66 493 -5626 21 0 0 0 chr21 40824918 40824939 -4082631 + AT_rich Low_complexity Low_complexity 1 21 0 1231 246 46 62 chr21 40824978 40825604 -4081966 + L1MEd LINE L1 627 1242 -4877 256 281 0 22 chr21 40825603 40825692 -4081878 + HAL1 LINE L1 1579 1665 -842 * 576 203 111 7 chr21 40825836 40825989 -4081581 + MER58C DNA MER1_type 44 212 -3 329 332 49 15 chr21 40826249 40826454 -4081116 + L1MEd LINE L1 2106 2317 -3812 278 236 34 22 chr21 40828614 40828703 -4078867 + CT-rich Low_complexity Low_complexity 2 91 0 264 233 190 17 chr21 40831868 40831984 -4075586 - MER5C DNA MER1_type -79 245 110 606 294 81 8 chr21 40832283 40832518 -4075052 - MER45C DNA AcHobo -686 267 16 2933 194 91 13 chr21 40833245 40833880 -4073690 - LTR34 LTR ERV1 0 699 15 2249 90 3 0 chr21 40833894 40834193 -4073377 - AluSg SINE Alu -10 300 1 22 0 0 0 chr21 40834571 40834593 -4072977 + AT_rich Low_complexity Low_complexity 1 22 0 639 260 40 6 chr21 40834593 40834770 -4072800 - L1MB5 LINE L1 0 6174 5992 180 0 0 0 chr21 40835816 40835836 -4071734 + (GGGAA)n Simple_repeat Simple_repeat 1 20 0 1582 215 14 25 chr21 40839761 40840119 -4067451 + MLT2C1 LTR ERVL 1 354 -43 666 227 0 0 chr21 40840119 40840349 -4067221 + (TG)n Simple_repeat Simple_repeat 1 230 0 245 289 81 27 chr21 40840773 40840922 -4066648 - L2 LINE L2 -3 3310 3154 2099 105 3 43 chr21 40842834 40843158 -4064412 - AluSx SINE Alu -1 311 1 270 266 43 21 chr21 40844373 40844467 -4063103 + MLT1I LTR MaLR 200 295 -114 3757 161 60 44 chr21 40844918 40845763 -4061807 - MER21A LTR ERV1 -6 925 13 337 330 0 0 chr21 40845763 40845851 -4061719 - L1MC4 LINE L1 -1341 6701 6614 24 53 0 0 chr21 40845865 40845903 -4061667 + AT_rich Low_complexity Low_complexity 1 38 0 1078 217 81 14 chr21 40846112 40846653 -4060917 + MER82 DNA MER2_type 7 622 -31 321 242 81 16 chr21 40847284 40847408 -4060162 - LTR16A LTR ERVL 0 450 319 2235 112 52 30 chr21 40847753 40848120 -4059450 - THE1C LTR MaLR 0 375 1 1583 353 56 26 chr21 40848314 40849470 -4058100 - HERVL LTR ERVL -1978 3507 2302 427 151 21 21 chr21 40849460 40849553 -4058017 - MER83B-int LTR ERV1 -2138 4620 4528 * 2082 229 127 30 chr21 40849592 40849772 -4057798 - MER50 LTR ERV1 0 734 573 2511 52 3 0 chr21 40849772 40850081 -4057489 + AluY SINE Alu 1 310 -1 2082 229 127 30 chr21 40850081 40850569 -4057001 - MER50 LTR ERV1 -161 573 1 1585 144 23 73 chr21 40850572 40850886 -4056684 - MER83B-int LTR ERV1 -2228 4530 4234 1790 137 17 20 chr21 40850886 40851185 -4056385 + AluSx SINE Alu 2 299 -13 1585 144 23 73 chr21 40851185 40851224 -4056346 - MER83B-int LTR ERV1 -2524 4234 4195 5446 57 11 12 chr21 40851228 40851972 -4055598 - MER4E LTR ERV1 -22 744 2 641 202 40 111 chr21 40851973 40852090 -4055480 - MER83B-int LTR ERV1 -2898 1293 1202 2200 80 3 43 chr21 40852090 40852416 -4055154 - AluSq SINE Alu 0 313 1 641 202 40 111 chr21 40852416 40852551 -4055019 - MER83B-int LTR ERV1 -2989 1202 1059 * 3099 156 15 41 chr21 40852540 40853123 -4054447 - MER83B-int LTR ERV1 -2867 3891 3324 727 206 105 14 chr21 40853209 40853428 -4054142 - MER83B-int LTR ERV1 -3831 2927 2689 3091 83 121 48 chr21 40853437 40853480 -4054090 - LTR10E LTR ERV1 -28 605 567 2426 73 0 0 chr21 40853480 40853783 -4053787 + AluY SINE Alu 1 303 -8 3091 83 121 48 chr21 40853783 40854303 -4053267 - LTR10E LTR ERV1 -66 567 1 377 206 76 77 chr21 40854303 40854542 -4053028 - MER83B-int LTR ERV1 -3724 1399 1197 623 166 144 7 chr21 40854542 40854681 -4052889 - MER34C LTR ERV1 -268 317 160 550 165 18 0 chr21 40854686 40854811 -4052759 - MER83B-int LTR ERV1 -3220 2726 851 * 1041 279 52 42 chr21 40854809 40855236 -4052334 - MER83B-int LTR ERV1 -4050 2281 1851 260 154 77 51 chr21 40855211 40855289 -4052281 - MER83B-int LTR ERV1 -2594 2286 2207 * 2016 106 7 23 chr21 40855293 40855595 -4051975 + AluSx SINE Alu 1 297 -15 1709 164 150 0 chr21 40856001 40856355 -4051215 - LTR47A LTR ERVL -1 451 45 1111 121 0 0 chr21 40856355 40856512 -4051058 + MER4B LTR ERV1 1 157 -453 2788 124 63 58 chr21 40856555 40856721 -4050849 - MER4B LTR ERV1 -36 574 410 2282 94 0 31 chr21 40856721 40857041 -4050529 + AluSx SINE Alu 1 310 -2 2788 124 63 58 chr21 40857041 40857445 -4050125 - MER4B LTR ERV1 -200 410 1 2027 120 110 32 chr21 40857454 40857855 -4049715 + MER4E LTR ERV1 348 779 0 1969 144 67 25 chr21 40857859 40858219 -4049351 - THE1C LTR MaLR 0 375 1 303 149 0 0 chr21 40858221 40858268 -4049302 - LTR47A LTR ERVL -405 47 1 * 359 269 57 103 chr21 40858268 40858566 -4049004 - MLT1I LTR MaLR -43 366 83 388 243 133 40 chr21 40858657 40858883 -4048687 - L1MEd LINE L1 -2005 4124 3878 302 303 0 22 chr21 40858927 40859016 -4048554 - L1MEd LINE L1 -2945 3184 3098 710 173 0 24 chr21 40859017 40859144 -4048426 - AluJb SINE Alu -2 310 187 533 323 56 15 chr21 40859191 40859389 -4048181 - L1MEd LINE L1 -3698 2431 2226 231 196 39 0 chr21 40859390 40859441 -4048129 + L1M4 LINE L1 2968 3020 -3126 * 346 328 62 42 chr21 40859440 40859631 -4047939 - L1MEd LINE L1 -4904 1215 1029 2112 114 7 19 chr21 40859631 40859939 -4047631 - AluSx SINE Alu -8 304 1 346 328 62 42 chr21 40859939 40860139 -4047431 - L1MEd LINE L1 -5090 1029 809 1943 130 0 55 chr21 40860139 40860469 -4047101 + AluSx SINE Alu 1 312 0 346 328 62 42 chr21 40860469 40860594 -4046976 - L1MEd LINE L1 -5310 809 688 232 222 93 74 chr21 40861030 40861192 -4046378 - L1MEd LINE L1 -5901 218 54 2206 127 89 27 chr21 40861668 40862071 -4045499 - MSTA LTR MaLR 0 428 1 688 53 68 31 chr21 40863807 40864420 -4043150 + (CA)n Simple_repeat Simple_repeat 1 635 0 608 170 21 29 chr21 40864443 40864847 -4042723 + (CA)n Simple_repeat Simple_repeat 1 400 0 554 298 24 65 chr21 40866728 40866797 -4040773 - MLT1L LTR MaLR -175 440 370 2109 121 0 0 chr21 40866797 40867095 -4040475 + AluSc SINE Alu 1 298 -11 554 298 24 65 chr21 40867095 40867364 -4040206 - MLT1L LTR MaLR -245 370 116 3057 157 42 77 chr21 40868813 40869117 -4038453 - MER72 LTR ERV1 0 722 409 1957 123 0 11 chr21 40869117 40869394 -4038176 + AluSq SINE Alu 1 274 -39 2204 107 7 0 chr21 40869398 40869706 -4037864 + AluSg SINE Alu 1 310 0 3057 157 42 77 chr21 40869706 40870136 -4037434 - MER72 LTR ERV1 -316 406 9 2206 118 0 0 chr21 40871862 40872168 -4035402 + AluSx SINE Alu 1 306 -6 195 343 113 42 chr21 40872379 40872592 -4034978 + L2 LINE L2 3045 3272 0 319 280 76 25 chr21 40872915 40873033 -4034537 - L2 LINE L2 -5 3267 3144 3077 158 61 50 chr21 40873052 40873655 -4033915 + MER4B LTR ERV1 1 610 0 423 250 39 16 chr21 40874288 40874416 -4033154 - MER5B DNA MER1_type -35 143 13 820 248 127 22 chr21 40875028 40875350 -4032220 + MLT1A2 LTR MaLR 18 373 -1 216 329 14 0 chr21 40876773 40876843 -4030727 - MIR SINE MIR -101 107 37 325 199 32 39 chr21 40876885 40877041 -4030529 - L1MEc LINE L1 -4122 2274 2120 1135 57 17 11 chr21 40877041 40877216 -4030354 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 381 351 53 54 chr21 40877241 40877495 -4030075 + L1MEd LINE L1 832 1085 -5311 1034 63 29 11 chr21 40877495 40877670 -4029900 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 381 351 53 54 chr21 40877670 40878339 -4029231 + L1MEd LINE L1 1085 1386 -5010 215 22 67 22 chr21 40878339 40878384 -4029186 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 381 351 53 54 chr21 40878384 40878563 -4029007 + L1MEd LINE L1 1386 1564 -4832 235 196 0 0 chr21 40878569 40878615 -4028955 + MLT2B3 LTR ERVL 509 554 0 333 317 120 18 chr21 40879329 40879496 -4028074 - ERVL LTR ERVL -1362 4402 4219 1020 180 0 0 chr21 40879560 40879732 -4027838 - FRAM SINE Alu -11 165 1 707 334 22 16 chr21 40879732 40880046 -4027524 - ERVL LTR ERVL -3157 2607 2292 565 240 11 69 chr21 40880436 40880501 -4027069 + MER5B DNA MER1_type 1 68 -110 2304 98 0 0 chr21 40880501 40880807 -4026763 + AluSx SINE Alu 1 306 -6 565 240 11 69 chr21 40880807 40880916 -4026654 + MER5B DNA MER1_type 68 165 -13 637 237 71 0 chr21 40881579 40881748 -4025822 - MER20 DNA MER1_type -33 186 6 644 265 116 39 chr21 40882218 40882659 -4024911 - LTR33 LTR ERVL -25 496 22 192 380 190 0 chr21 40882851 40882951 -4024619 + L2 LINE L2 3182 3300 -13 372 314 24 0 chr21 40883024 40883193 -4024377 + (TCCA)n Simple_repeat Simple_repeat 1 173 0 247 202 24 0 chr21 40883229 40883313 -4024257 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 262 184 26 0 chr21 40883351 40883427 -4024143 + (TCCA)n Simple_repeat Simple_repeat 1 78 0 383 214 17 17 chr21 40883465 40883643 -4023927 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 362 219 17 17 chr21 40883681 40883859 -4023711 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 286 147 29 0 chr21 40883909 40883977 -4023593 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 392 198 11 33 chr21 40884015 40884197 -4023373 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 232 302 7 36 chr21 40884199 40884338 -4023232 + (CATA)n Simple_repeat Simple_repeat 1 135 0 * 261 289 24 0 chr21 40884316 40884399 -4023171 + (TCCA)n Simple_repeat Simple_repeat 1 85 0 206 414 7 0 chr21 40884365 40884510 -4023060 + (CCCA)n Simple_repeat Simple_repeat 3 148 0 * 493 273 6 33 chr21 40884437 40884620 -4022950 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 762 215 0 0 chr21 40885783 40886059 -4021511 + (CA)n Simple_repeat Simple_repeat 1 276 0 5192 195 38 59 chr21 40887331 40887507 -4020063 + L1MC3 LINE L1 6402 6580 -1205 2160 97 0 3 chr21 40887507 40887797 -4019773 + AluSg SINE Alu 1 289 -21 5192 195 38 59 chr21 40887797 40889033 -4018537 + L1MC3 LINE L1 6580 7784 -1 236 331 38 23 chr21 40889318 40889451 -4018119 + MLT1K LTR MaLR 447 581 -7 29 0 0 0 chr21 40889774 40889803 -4017767 + GC_rich Low_complexity Low_complexity 1 29 0 340 288 50 29 chr21 40890403 40890542 -4017028 - MIR3 SINE MIR -53 155 14 491 274 80 30 chr21 40890721 40890958 -4016612 + L2 LINE L2 2995 3243 -70 2209 112 0 0 chr21 40891858 40892154 -4015416 - AluSx SINE Alu -12 300 5 2022 127 6 19 chr21 40892428 40892742 -4014828 + AluSg SINE Alu 1 310 0 297 285 91 55 chr21 40894407 40894572 -4012998 - MIR SINE MIR -70 192 22 359 295 62 50 chr21 40895882 40896312 -4011258 + L1MC/D LINE L1 5184 5620 -939 2129 108 0 3 chr21 40896312 40896608 -4010962 + AluSx SINE Alu 1 295 -17 359 295 62 50 chr21 40896608 40896743 -4010827 + L1MC/D LINE L1 5620 5752 -807 2309 90 0 7 chr21 40896827 40897137 -4010433 - AluSc SINE Alu -1 308 1 187 177 0 113 chr21 40897633 40897695 -4009875 + L2 LINE L2 3213 3267 -5 439 146 47 115 chr21 40898574 40898766 -4008804 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 1142 233 125 30 chr21 40899121 40899562 -4008008 + MLT2B1 LTR ERVL 6 411 -3 538 296 84 58 chr21 40899566 40900251 -4007319 + L2 LINE L2 2572 3280 -33 236 224 35 0 chr21 40902027 40902112 -4005458 + G-rich Low_complexity Low_complexity 1 88 0 30 59 0 0 chr21 40902188 40902239 -4005331 + GC_rich Low_complexity Low_complexity 1 51 0 214 114 23 23 chr21 40902262 40902306 -4005264 + C-rich Low_complexity Low_complexity 2 45 0 28 0 0 0 chr21 40902481 40902509 -4005061 + GC_rich Low_complexity Low_complexity 1 28 0 341 246 8 0 chr21 40903650 40903784 -4003786 + (CA)n Simple_repeat Simple_repeat 1 135 0 182 297 0 47 chr21 40903840 40903904 -4003666 + MER5A DNA MER1_type 7 67 -122 306 341 116 12 chr21 40904118 40904291 -4003279 + MIR SINE MIR 51 241 -21 923 133 14 0 chr21 40909040 40909183 -3998387 + L1PB1 LINE L1 6007 6151 0 2310 71 3 0 chr21 40909586 40909880 -3997690 - AluSg SINE Alu -15 295 1 1022 214 31 27 chr21 40909889 40910183 -3997387 - L1MB3 LINE L1 -129 6054 5760 490 264 189 19 chr21 40910488 40910700 -3996870 + MIR SINE MIR 15 262 0 661 133 44 20 chr21 40910999 40911504 -3996066 + (CA)n Simple_repeat Simple_repeat 1 517 0 526 150 11 48 chr21 40911546 40911733 -3995837 + (CA)n Simple_repeat Simple_repeat 1 180 0 461 144 38 25 chr21 40911744 40911904 -3995666 + (CA)n Simple_repeat Simple_repeat 1 162 0 227 163 47 0 chr21 40913193 40913236 -3994334 + GA-rich Low_complexity Low_complexity 4 48 0 1074 247 72 63 chr21 40913442 40913899 -3993671 + MLT1C LTR MaLR 1 461 -6 442 254 77 2 chr21 40915071 40915364 -3992206 - MLT1B LTR MaLR -26 364 1 802 267 9 4 chr21 40917659 40917884 -3989686 - MLT1D LTR MaLR -17 488 263 202 286 235 0 chr21 40918167 40918265 -3989305 + MIR SINE MIR 28 148 -114 222 271 43 0 chr21 40918357 40918427 -3989143 - MIR SINE MIR -143 119 47 585 238 0 0 chr21 40918593 40919010 -3988560 + (CA)n Simple_repeat Simple_repeat 1 417 0 417 211 6 12 chr21 40919027 40919188 -3988382 + (CA)n Simple_repeat Simple_repeat 2 161 0 555 220 0 0 chr21 40919203 40919376 -3988194 + (CA)n Simple_repeat Simple_repeat 1 173 0 307 346 46 53 chr21 40919554 40919837 -3987733 + L1MC5 LINE L1 7636 7916 -45 335 313 123 0 chr21 40921649 40921812 -3985758 - MIR SINE MIR -63 145 3 404 119 0 0 chr21 40922865 40922932 -3984638 - Alu SINE Alu 0 302 236 655 276 75 36 chr21 40923490 40923874 -3983696 - L1ME4a LINE L1 -1 6120 5722 255 292 10 31 chr21 40923958 40924054 -3983516 + MIR SINE MIR 169 262 0 1913 237 56 45 chr21 40924215 40924388 -3983182 - L1MD2 LINE L1 -27 6332 6162 2001 171 35 33 chr21 40924388 40924815 -3982755 + MSTA LTR MaLR 1 428 0 1913 237 56 45 chr21 40924815 40925255 -3982315 - L1MD2 LINE L1 -197 6162 5722 2127 152 0 0 chr21 40926192 40926494 -3981076 - AluSx SINE Alu -10 302 1 182 328 17 50 chr21 40929642 40929761 -3977809 - MIR SINE MIR -56 206 92 650 228 45 20 chr21 40930664 40930866 -3976704 - LTR37A LTR ERV1 -20 406 200 1008 298 77 63 chr21 40930906 40931820 -3975750 - MER31-int LTR ERV1 -685 4251 3326 184 238 0 0 chr21 40932019 40932061 -3975509 - MIR SINE MIR -119 143 102 2569 53 0 3 chr21 40934019 40934319 -3973251 - AluSq SINE Alu -14 299 1 2426 95 0 0 chr21 40935085 40935389 -3972181 + AluSx SINE Alu 2 305 -7 187 135 27 0 chr21 40936792 40936829 -3970741 - MIR SINE MIR -65 143 106 244 156 9 37 chr21 40939517 40939626 -3967944 + (CACCAT)n Simple_repeat Simple_repeat 3 108 0 181 182 0 26 chr21 40939675 40939752 -3967818 + (CACCAT)n Simple_repeat Simple_repeat 5 79 0 368 193 6 57 chr21 40939767 40939943 -3967627 + (CACCAT)n Simple_repeat Simple_repeat 3 169 0 201 159 0 0 chr21 40939959 40940003 -3967567 + (CACCAT)n Simple_repeat Simple_repeat 6 49 0 253 208 0 47 chr21 40940017 40940123 -3967447 + (CACCAT)n Simple_repeat Simple_repeat 3 103 0 224 188 6 38 chr21 40940139 40940299 -3967271 + (CACCAT)n Simple_repeat Simple_repeat 4 158 0 341 229 0 46 chr21 40940348 40940523 -3967047 + (CACCAT)n Simple_repeat Simple_repeat 3 169 0 593 287 32 0 chr21 40940795 40940983 -3966587 + MER20 DNA MER1_type 18 211 -8 251 190 129 110 chr21 40941051 40941214 -3966356 - MER5A DNA MER1_type -1 188 23 309 228 123 136 chr21 40941807 40941851 -3965719 + MER5B DNA MER1_type 2 45 -133 2439 49 28 0 chr21 40941851 40942137 -3965433 - AluY SINE Alu -13 298 5 2424 99 3 0 chr21 40942140 40942443 -3965127 - AluSp SINE Alu -9 304 1 309 228 123 136 chr21 40942443 40942556 -3965014 + MER5B DNA MER1_type 47 161 -17 264 30 0 0 chr21 40942741 40942774 -3964796 + (TTGG)n Simple_repeat Simple_repeat 4 36 0 1216 219 27 30 chr21 40946111 40946439 -3961131 - MLT1A2 LTR MaLR -47 327 1 28 0 0 0 chr21 40947381 40947409 -3960161 + AT_rich Low_complexity Low_complexity 1 28 0 2231 114 0 29 chr21 40948094 40948410 -3959160 - AluSx SINE Alu -5 307 1 1469 228 83 26 chr21 40948445 40948937 -3958633 - L1ME2 LINE L1 -9 6224 5705 355 183 12 24 chr21 40949012 40949094 -3958476 - L1MD3 LINE L1 -364 7631 7551 408 243 27 36 chr21 40949126 40949237 -3958333 - L1MD3 LINE L1 -558 7437 7328 * 1905 267 81 13 chr21 40949211 40949904 -3957666 - L1ME2 LINE L1 -1178 5037 4298 1792 299 66 30 chr21 40949907 40949964 -3957606 - L1ME2 LINE L1 -4688 1708 1654 1621 182 52 39 chr21 40949964 40950272 -3957298 - AluJo SINE Alu 0 312 1 1792 299 66 30 chr21 40950272 40951336 -3956234 - L1ME2 LINE L1 -4742 1654 547 712 297 64 13 chr21 40951375 40951688 -3955882 - L2 LINE L2 -508 2806 2478 333 0 0 0 chr21 40952985 40953022 -3954548 + (CA)n Simple_repeat Simple_repeat 2 38 0 497 168 56 0 chr21 40954748 40954855 -3952715 + Charlie5 DNA MER1_type 2324 2436 -176 1541 189 56 104 chr21 40954861 40954914 -3952656 - L1MB7 LINE L1 -20 6164 6110 2355 102 3 0 chr21 40954914 40955208 -3952362 + AluSx SINE Alu 1 295 -17 1541 189 56 104 chr21 40955208 40955672 -3951898 - L1MB7 LINE L1 -74 6110 5672 399 257 29 0 chr21 40956083 40956223 -3951347 + LTR16C LTR ERVL 346 489 -2 611 249 53 6 chr21 40956282 40956451 -3951119 + MIR SINE MIR 86 262 0 2435 87 10 3 chr21 40957096 40957407 -3950163 - AluSq SINE Alu 0 313 1 4017 76 14 0 chr21 40957466 40958019 -3949551 + L1PA10 LINE L1 5603 6163 -5 566 243 185 0 chr21 40958025 40958214 -3949356 - L1ME2 LINE L1 -75 6023 5800 694 110 14 10 chr21 40958215 40958412 -3949158 - AluJb SINE Alu 0 320 58 1245 202 83 104 chr21 40958413 40958677 -3948893 - L1ME2 LINE L1 -290 5808 5540 2486 84 0 3 chr21 40958677 40958988 -3948582 + AluSx SINE Alu 1 310 -2 1245 202 83 104 chr21 40958988 40959257 -3948313 - L1ME2 LINE L1 -558 5540 5284 2174 114 3 3 chr21 40959257 40959547 -3948023 + AluSx SINE Alu 1 290 -22 1245 202 83 104 chr21 40959547 40959804 -3947766 - L1ME2 LINE L1 -814 5284 5023 2035 85 78 7 chr21 40959805 40960088 -3947482 - AluSq SINE Alu -10 303 1 288 145 0 20 chr21 40960089 40960144 -3947426 - Alu SINE Alu -256 43 1 3518 240 53 20 chr21 40960241 40961334 -3946236 - L1ME2 LINE L1 -1121 4959 3831 569 233 16 36 chr21 40961336 40961529 -3946041 - L1ME2 LINE L1 -2154 3926 3738 2348 89 10 0 chr21 40961681 40961985 -3945585 - AluSx SINE Alu -5 307 1 539 312 9 0 chr21 40961986 40962201 -3945369 - L1ME2 LINE L1 -2367 3713 3497 774 118 70 37 chr21 40962250 40962437 -3945133 + L1MA8 LINE L1 6087 6279 -12 348 84 6 0 chr21 40962457 40962515 -3945055 - Alu SINE Alu -7 294 244 2441 85 3 25 chr21 40962551 40962868 -3944702 - AluY SINE Alu -1 310 1 357 318 14 5 chr21 40963529 40963743 -3943827 - L1ME2 LINE L1 -4147 2114 1899 1092 209 51 64 chr21 40963767 40963896 -3943674 - L1MC1 LINE L1 -7 6326 6197 2126 116 34 0 chr21 40963896 40964188 -3943382 + AluSx SINE Alu 1 302 -10 1092 209 51 64 chr21 40964188 40964354 -3943216 - L1MC1 LINE L1 -136 6197 6035 * 4099 164 53 1 chr21 40964346 40965120 -3942450 - L1MC2 LINE L1 -214 6130 5317 791 287 29 58 chr21 40965121 40965294 -3942276 - L1ME2 LINE L1 -4351 1910 1733 2426 89 0 22 chr21 40965294 40965609 -3941961 - AluSx SINE Alu -4 308 1 791 287 29 58 chr21 40965609 40965846 -3941724 - L1ME2 LINE L1 -4528 1733 1512 1091 115 51 0 chr21 40965846 40966003 -3941567 - AluSx SINE Alu -8 304 140 671 120 0 0 chr21 40966016 40966108 -3941462 + AluSg/x SINE Alu 204 295 -17 1188 53 0 0 chr21 40966110 40966241 -3941329 - AluSx SINE Alu -179 133 3 1166 259 63 56 chr21 40966246 40966452 -3941118 - L1ME2 LINE L1 -4601 1479 1276 216 0 0 0 chr21 40966452 40966476 -3941094 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1909 81 73 4 chr21 40966478 40966750 -3940820 - AluSq SINE Alu -20 293 3 1166 259 63 56 chr21 40966750 40967481 -3940089 - L1ME2 LINE L1 -4804 1276 531 368 297 97 11 chr21 40967680 40967855 -3939715 - L1ME2 LINE L1 -5643 427 238 2089 115 3 19 chr21 40967904 40968217 -3939353 + AluSx SINE Alu 1 308 -4 285 230 150 0 chr21 40968220 40968320 -3939250 - L1MC1 LINE L1 -1981 5827 5713 2430 63 0 0 chr21 40968764 40969063 -3938507 + AluSp SINE Alu 2 300 -13 194 283 0 98 chr21 40969254 40969275 -3938295 + MIR SINE MIR 170 191 -71 2252 88 3 0 chr21 40969275 40969571 -3937999 + AluSp SINE Alu 1 297 -16 194 283 0 98 chr21 40969571 40969641 -3937929 + MIR SINE MIR 191 252 -10 2214 105 0 7 chr21 40970523 40970827 -3936743 - AluSc SINE Alu -7 302 1 3037 247 59 20 chr21 40973508 40973777 -3933793 - L1MD1 LINE L1 -9 6233 5976 2232 96 3 6 chr21 40973777 40974090 -3933480 - AluSp SINE Alu -1 312 1 3037 247 59 20 chr21 40974090 40975110 -3932460 - L1MD1 LINE L1 -266 5976 4894 288 0 0 0 chr21 40975145 40975177 -3932393 + (TA)n Simple_repeat Simple_repeat 2 33 0 804 133 7 7 chr21 40975177 40975312 -3932258 - FLAM_C SINE Alu -8 135 1 2488 234 24 71 chr21 40975356 40975880 -3931690 - L1MD1 LINE L1 -1248 4898 4432 1646 146 14 34 chr21 40975880 40976174 -3931396 - AluJo SINE Alu -13 299 12 2488 234 24 71 chr21 40976174 40976556 -3931014 - L1MD1 LINE L1 -1714 4432 4034 1402 150 0 35 chr21 40976556 40976865 -3930705 - MER2 DNA MER2_type 0 345 1 4445 257 21 22 chr21 40976865 40977271 -3930299 - L1MD1 LINE L1 -2111 4035 3630 2045 120 3 3 chr21 40977271 40977572 -3929998 + AluSx SINE Alu 3 303 -9 4445 257 21 22 chr21 40977572 40978564 -3929006 - L1MD1 LINE L1 -2516 3630 2639 262 317 39 10 chr21 40978874 40978978 -3928592 - MIR3 SINE MIR -3 205 99 406 250 11 131 chr21 40978980 40979156 -3928414 - L1ME4a LINE L1 -2 6119 5965 342 326 73 43 chr21 40979156 40979389 -3928181 - L1MC4a LINE L1 -1889 5919 5680 288 267 35 0 chr21 40979392 40979478 -3928092 - L1MC4a LINE L1 -471 5650 5562 2385 66 3 3 chr21 40979504 40979808 -3927762 - AluSp SINE Alu -8 305 2 2328 66 13 0 chr21 40981184 40981487 -3926083 + AluSp SINE Alu 1 307 -6 1959 160 154 0 chr21 40982391 40982760 -3924810 + MSTB LTR MaLR 1 426 0 783 148 0 0 chr21 40983122 40983237 -3924333 - AluSg/x SINE Alu -10 302 188 296 223 95 54 chr21 40983309 40983436 -3924134 - MIR SINE MIR -34 174 39 761 218 15 34 chr21 40983555 40983761 -3923809 - LTR67 LTR ERVL -19 538 337 1363 263 21 50 chr21 40983935 40984410 -3923160 - MLT1C LTR MaLR -6 461 1 310 388 0 6 chr21 40985782 40985960 -3921610 + (CA)n Simple_repeat Simple_repeat 2 178 0 192 77 0 0 chr21 40985992 40986018 -3921552 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1954 121 10 0 chr21 40986020 40986309 -3921261 - AluSq SINE Alu -21 292 1 1983 116 16 16 chr21 40987232 40987542 -3920028 - AluSq SINE Alu -3 310 1 376 233 33 11 chr21 40988361 40988451 -3919119 + MER46C DNA MER2_type 64 155 -183 21 57 0 0 chr21 40988566 40988601 -3918969 + AT_rich Low_complexity Low_complexity 1 35 0 467 169 17 23 chr21 40988620 40988708 -3918862 + (TAGA)n Simple_repeat Simple_repeat 3 90 -88 1845 171 0 16 chr21 40988708 40989024 -3918546 + AluJb SINE Alu 1 311 -1 467 169 17 23 chr21 40989024 40989112 -3918458 + (TAGA)n Simple_repeat Simple_repeat 90 178 0 480 62 0 0 chr21 40989113 40989177 -3918393 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 974 104 17 6 chr21 40989178 40989351 -3918219 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 361 252 52 71 chr21 40989385 40989540 -3918030 + L1ME4a LINE L1 5967 6118 -3 462 313 62 48 chr21 40990396 40990732 -3916838 - MARNA DNA Mariner -231 355 15 4783 98 35 25 chr21 40990746 40991009 -3916561 - LTR8 LTR ERV1 0 691 432 2386 75 0 3 chr21 40991009 40991316 -3916254 - AluSg SINE Alu -4 306 1 4783 98 35 25 chr21 40991316 40991736 -3915834 - LTR8 LTR ERV1 -259 432 1 2190 91 0 7 chr21 40992622 40992918 -3914652 + AluSx SINE Alu 1 294 -18 1195 219 36 99 chr21 40994820 40995236 -3912334 - MLT1B LTR MaLR 0 390 1 509 346 15 42 chr21 40997523 40997783 -3909787 - L1ME LINE L1 -306 5815 5563 302 294 93 23 chr21 40998184 40998398 -3909172 + L1MC4a LINE L1 5700 5928 -1880 2166 125 0 0 chr21 40998407 40998712 -3908858 + AluSx SINE Alu 1 305 -7 898 142 15 0 chr21 40998730 40998864 -3908706 + AluJo SINE Alu 1 136 -176 2099 81 0 69 chr21 40999116 40999436 -3908134 - AluSc SINE Alu -11 298 1 2036 89 48 14 chr21 41000296 41000588 -3906982 - AluSq SINE Alu -11 302 1 2050 109 24 0 chr21 41000823 41001116 -3906454 - AluSx SINE Alu -12 300 1 2082 120 3 0 chr21 41001557 41001857 -3905713 - AluSx SINE Alu -11 301 1 576 241 61 1 chr21 41001879 41002059 -3905511 - L1ME1 LINE L1 -6 6160 5960 2203 100 10 3 chr21 41002132 41002443 -3905127 + AluSq SINE Alu 1 313 0 338 113 0 113 chr21 41003119 41003151 -3904419 + FLAM SINE Alu 63 84 -218 2144 115 71 3 chr21 41003151 41003490 -3904080 + THE1B LTR MaLR 1 362 -2 338 113 0 113 chr21 41003490 41003528 -3904042 + FLAM SINE Alu 84 125 -177 717 198 31 7 chr21 41006038 41006208 -3901362 - MLT1B LTR MaLR 0 390 196 566 281 84 40 chr21 41006253 41006502 -3901068 - MLT1B LTR MaLR -130 260 1 543 223 12 0 chr21 41007922 41008423 -3899147 + (TG)n Simple_repeat Simple_repeat 1 507 0 213 189 0 0 chr21 41009294 41009331 -3898239 + (CACCC)n Simple_repeat Simple_repeat 4 40 0 270 296 88 24 chr21 41011000 41011125 -3896445 - MIR SINE MIR -41 221 89 2292 94 3 3 chr21 41011235 41011544 -3896026 - AluSx SINE Alu -3 309 1 1022 226 108 55 chr21 41011773 41012206 -3895364 + MLT1C LTR MaLR 6 461 -6 1071 150 7 0 chr21 41013531 41013807 -3893763 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 1294 167 63 44 chr21 41014612 41014882 -3892688 + AluJo SINE Alu 14 288 -24 369 230 105 46 chr21 41015696 41015935 -3891635 - MER76 LTR ERV -389 299 47 585 222 0 4 chr21 41017759 41018016 -3889554 + (CA)n Simple_repeat Simple_repeat 1 255 0 570 248 0 0 chr21 41018080 41018345 -3889225 + (CA)n Simple_repeat Simple_repeat 1 265 0 205 188 0 42 chr21 41020311 41020359 -3887211 + L2 LINE L2 3212 3257 -15 2238 119 7 0 chr21 41021189 41021483 -3886087 - AluSq SINE Alu -17 296 1 2277 96 7 3 chr21 41021540 41021831 -3885739 + AluSx SINE Alu 11 302 -10 2364 70 20 0 chr21 41022077 41022374 -3885196 + AluY SINE Alu 1 303 -8 2087 57 102 8 chr21 41022374 41022666 -3884904 + AluY SINE Alu 1 317 0 182 37 37 0 chr21 41022690 41022717 -3884853 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 342 319 67 33 chr21 41022798 41023023 -3884547 + MIR SINE MIR 10 253 -9 2390 97 0 0 chr21 41023151 41023449 -3884121 + AluSx SINE Alu 1 298 -14 2437 88 0 0 chr21 41023490 41023787 -3883783 - AluSg SINE Alu -9 301 5 2389 43 72 0 chr21 41025400 41025677 -3881893 - AluY SINE Alu -14 297 1 6373 36 1 7 chr21 41027067 41027817 -3879753 + SVA Other Other 665 1386 0 897 237 157 0 chr21 41028110 41028410 -3879160 + MLT1B LTR MaLR 1 347 -43 210 37 0 0 chr21 41028577 41028604 -3878966 + (TC)n Simple_repeat Simple_repeat 2 28 0 195 129 0 0 chr21 41028648 41028679 -3878891 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 365 121 0 0 chr21 41028679 41028737 -3878833 + Alu SINE Alu 244 301 0 * 2784 144 44 37 chr21 41028732 41028847 -3878723 - LTR38B LTR ERV1 -65 545 432 2189 126 0 3 chr21 41028847 41029149 -3878421 + AluSx SINE Alu 1 301 -11 2784 144 44 37 chr21 41029149 41029574 -3877996 - LTR38B LTR ERV1 -178 432 1 414 165 5 58 chr21 41030501 41030689 -3876881 + CT-rich Low_complexity Low_complexity 1 178 0 315 247 47 82 chr21 41031654 41031791 -3875779 - L1P LINE L1 -709 5422 5291 2436 93 0 3 chr21 41031791 41032103 -3875467 - AluSx SINE Alu 0 312 2 315 247 47 82 chr21 41032103 41032135 -3875435 - L1P LINE L1 -840 5291 5259 664 215 125 17 chr21 41032208 41032475 -3875095 + MLT1A1 LTR MaLR 8 304 -70 781 261 95 58 chr21 41032578 41033041 -3874529 - MLT1D LTR MaLR -5 500 21 845 114 0 43 chr21 41033128 41033480 -3874090 + (CACCC)n Simple_repeat Simple_repeat 1 336 0 234 186 68 17 chr21 41035030 41035089 -3872481 - MLT1D LTR MaLR -405 62 1 449 230 63 115 chr21 41035609 41035998 -3871572 - MLT1H LTR MaLR 0 549 100 2229 102 30 13 chr21 41035998 41036301 -3871269 + AluSx SINE Alu 1 308 -4 449 230 63 115 chr21 41036301 41036329 -3871241 - MLT1H LTR MaLR -449 100 72 387 0 0 0 chr21 41036352 41036395 -3871175 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2047 122 53 26 chr21 41036583 41036886 -3870684 + AluSx SINE Alu 1 311 -1 703 194 106 0 chr21 41037457 41037617 -3869953 + AluSg/x SINE Alu 134 310 0 34 0 0 0 chr21 41037641 41037675 -3869895 + AT_rich Low_complexity Low_complexity 1 34 0 1479 118 10 0 chr21 41037677 41037880 -3869690 + AluSx SINE Alu 1 205 -107 1418 170 44 0 chr21 41037880 41038151 -3869419 + L1PA16 LINE L1 5808 6090 -76 818 75 34 54 chr21 41038151 41038297 -3869273 + L1PA16 LINE L1 6023 6166 0 2323 82 3 7 chr21 41038408 41038699 -3868871 + AluSq SINE Alu 1 290 -23 302 200 0 0 chr21 41038928 41038988 -3868582 - L1M4 LINE L1 -878 5268 5209 926 238 68 0 chr21 41039162 41039397 -3868173 - L1MC/D LINE L1 -583 5845 5595 685 276 11 42 chr21 41039401 41039558 -3868012 - L1MC/D LINE L1 -3311 2904 2757 1923 160 19 3 chr21 41039558 41039865 -3867705 + AluJb SINE Alu 1 312 0 685 276 11 42 chr21 41039865 41039972 -3867598 - L1MC/D LINE L1 -3458 2757 2648 336 261 9 18 chr21 41040133 41040244 -3867326 + LTR33 LTR ERVL 410 519 -2 715 240 118 0 chr21 41040358 41040562 -3867008 + L1MCc LINE L1 19 246 -6177 1144 163 4 48 chr21 41040597 41040824 -3866746 - AluJo SINE Alu -2 310 94 740 93 0 0 chr21 41040824 41040931 -3866639 + AluSg/x SINE Alu 200 306 -6 739 93 9 0 chr21 41040931 41041039 -3866531 - MER31A LTR ERV1 -371 114 6 776 281 91 33 chr21 41041043 41041112 -3866458 + L1MCc LINE L1 226 290 -6133 2439 73 10 0 chr21 41041112 41041413 -3866157 + AluSg SINE Alu 1 304 -6 776 281 91 33 chr21 41041413 41041527 -3866043 + L1MCc LINE L1 290 396 -6027 2361 107 0 0 chr21 41041527 41041826 -3865744 + AluSg SINE Alu 1 299 -11 776 281 91 33 chr21 41041826 41042004 -3865566 + L1MCc LINE L1 396 609 -5814 526 97 0 0 chr21 41042048 41042120 -3865450 - MER4B LTR ERV1 -28 582 511 1258 100 0 6 chr21 41042139 41042299 -3865271 + AluSx SINE Alu 1 159 -153 1071 102 28 121 chr21 41042300 41042515 -3865055 - MER4A LTR ERV1 -98 566 372 385 162 0 0 chr21 41042573 41042641 -3864929 - MER4A LTR ERV1 -566 98 31 2225 100 3 3 chr21 41042655 41042944 -3864626 - AluSx SINE Alu -22 290 2 334 73 18 18 chr21 41042945 41043000 -3864570 - MER4A LTR ERV1 -609 55 1 661 241 104 58 chr21 41043225 41043503 -3864067 + L1MCc LINE L1 974 1264 -5159 501 256 26 6 chr21 41043507 41043663 -3863907 - L1MC/D LINE L1 -3559 2656 2498 353 135 0 0 chr21 41043676 41043728 -3863842 - MER83C LTR ERV1 -2 371 320 2317 94 0 16 chr21 41043728 41043904 -3863666 + AluSx SINE Alu 1 171 -141 3679 65 20 10 chr21 41043904 41044412 -3863158 + LTR10D LTR ERV1 1 513 0 2317 94 0 16 chr21 41044412 41044544 -3863026 + AluSx SINE Alu 171 304 -8 1593 107 159 35 chr21 41044544 41044581 -3862989 - MER83C LTR ERV1 -48 325 294 2282 114 0 3 chr21 41044581 41044879 -3862691 + AluSx SINE Alu 1 297 -15 1593 107 159 35 chr21 41044879 41045130 -3862440 - MER83C LTR ERV1 -79 294 1 440 237 39 39 chr21 41045133 41045175 -3862395 - L1MC/D LINE L1 -3727 2488 2447 1816 189 40 64 chr21 41045175 41045561 -3862009 - MER65A LTR ERV1 0 445 70 2109 107 42 0 chr21 41045561 41045850 -3861720 - AluSp SINE Alu -12 301 1 1816 189 40 64 chr21 41045850 41045919 -3861651 - MER65A LTR ERV1 -375 70 1 440 237 39 39 chr21 41045919 41046032 -3861538 - L1MC/D LINE L1 -3767 2448 2333 624 121 0 10 chr21 41046032 41046131 -3861439 + MER4A LTR ERV1 1 98 -566 1573 147 158 78 chr21 41046131 41046505 -3861065 + MER4A LTR ERV1 261 664 0 236 188 0 0 chr21 41046505 41046553 -3861017 - L1MC/D LINE L1 -4020 2376 2329 393 293 118 56 chr21 41046565 41046752 -3860818 + HAL1 LINE L1 1003 1216 -1291 4200 127 37 54 chr21 41046752 41047072 -3860498 - MER4E LTR ERV1 0 779 455 2437 68 3 3 chr21 41047072 41047368 -3860202 + AluY SINE Alu 1 296 -15 4200 127 37 54 chr21 41047368 41047840 -3859730 - MER4E LTR ERV1 -324 455 1 393 293 118 56 chr21 41047840 41047939 -3859631 + HAL1 LINE L1 1216 1307 -1200 333 222 0 0 chr21 41047940 41047994 -3859576 + AluJo SINE Alu 1 54 -247 1393 228 179 11 chr21 41048005 41048474 -3859096 - LTR10A LTR ERV1 -61 548 1 1473 177 8 8 chr21 41048475 41048724 -3858846 + AluJo SINE Alu 50 298 -14 230 254 191 0 chr21 41048889 41048952 -3858618 + MER67C LTR ERV1 157 231 -479 261 0 0 0 chr21 41048952 41048981 -3858589 + (TGG)n Simple_repeat Simple_repeat 1 29 0 2099 120 3 7 chr21 41048981 41049265 -3858305 - AluSp SINE Alu -27 286 4 3084 69 22 22 chr21 41049398 41049846 -3857724 - LTR7 LTR ERV1 -2 448 1 2373 88 48 13 chr21 41049846 41050223 -3857347 - HERVH LTR ERV1 0 7713 7324 1383 117 0 0 chr21 41050223 41050428 -3857142 - HERVH LTR ERV1 -1894 5819 5615 2919 131 10 2 chr21 41050463 41051072 -3856498 - HERVH LTR ERV1 -2564 5149 4488 5698 107 2 2 chr21 41051074 41051928 -3855642 - HERVH LTR ERV1 -3720 3993 3140 * 14845 97 13 23 chr21 41051907 41054681 -3852889 - HERVH LTR ERV1 -4718 2995 1 2991 83 22 20 chr21 41054683 41055130 -3852440 - LTR7 LTR ERV1 -2 448 1 805 193 21 11 chr21 41055137 41055324 -3852246 + MER67C LTR ERV1 519 707 -3 359 212 28 156 chr21 41055324 41055414 -3852156 - MLT1J LTR MaLR -111 400 300 1636 251 74 11 chr21 41055414 41055940 -3851630 - MER89 LTR ERV1 0 559 1 359 212 28 156 chr21 41055940 41055973 -3851597 - MLT1J LTR MaLR -211 300 264 2766 126 50 23 chr21 41055973 41056450 -3851120 - LTR2B LTR ERV1 0 490 1 3700 117 75 3 chr21 41056454 41057055 -3850515 + LTR9B LTR ERV1 1 644 0 359 212 28 156 chr21 41057055 41057135 -3850435 - MLT1J LTR MaLR -250 261 218 279 241 0 0 chr21 41058180 41058263 -3849307 + (CA)n Simple_repeat Simple_repeat 1 83 0 546 241 0 0 chr21 41058289 41058455 -3849115 + (CA)n Simple_repeat Simple_repeat 1 166 0 2171 115 0 30 chr21 41059298 41059603 -3847967 + AluSx SINE Alu 1 296 -16 284 204 129 11 chr21 41059611 41059704 -3847866 + MIR SINE MIR 100 203 -59 2061 126 27 0 chr21 41059815 41060116 -3847454 - AluJo SINE Alu -3 309 1 2355 118 92 45 chr21 41060293 41060758 -3846812 + LTR21A LTR ERV1 3 489 -16 1215 118 27 11 chr21 41060789 41060976 -3846594 - MER4B LTR ERV1 -19 591 402 3139 53 19 5 chr21 41060985 41061500 -3846070 + LTR10C LTR ERV1 1 589 -2 395 143 8 5 chr21 41061500 41061619 -3845951 - MER4A LTR ERV1 -226 438 261 473 131 30 40 chr21 41061619 41061718 -3845852 - MER4A LTR ERV1 -566 98 1 2690 106 45 14 chr21 41061719 41062161 -3845409 - MER4A-int LTR ERV1 0 6598 6143 8712 87 55 18 chr21 41062175 41062929 -3844641 - MER4A-int LTR ERV1 -1185 5413 4688 2056 152 3 0 chr21 41062929 41063225 -3844345 + AluSx SINE Alu 2 298 -14 8712 87 55 18 chr21 41063225 41063915 -3843655 - MER4A-int LTR ERV1 -1910 4688 3916 1490 134 144 19 chr21 41063901 41064311 -3843259 - MER4A-int LTR ERV1 -3267 3331 2871 * 1133 130 12 0 chr21 41064311 41064472 -3843098 - AluSp SINE Alu -23 290 128 1912 144 14 3 chr21 41064484 41064769 -3842801 - AluSx SINE Alu -17 295 8 290 160 0 0 chr21 41064770 41064820 -3842750 + MSTB LTR MaLR 377 426 0 304 253 11 44 chr21 41064830 41064921 -3842649 + MIR SINE MIR 145 232 -30 352 213 149 0 chr21 41064947 41065041 -3842529 - MLT1J LTR MaLR -163 348 241 2204 148 81 27 chr21 41065164 41065486 -3842084 - MSTC LTR MaLR 0 428 78 2374 93 0 0 chr21 41065486 41065798 -3841772 - AluSx SINE Alu 0 312 1 2204 148 81 27 chr21 41065798 41065881 -3841689 - MSTC LTR MaLR -350 78 1 484 304 46 15 chr21 41066537 41066863 -3840707 + L1M4 LINE L1 2171 2506 -3640 222 315 0 0 chr21 41066874 41066928 -3840642 + polypyrimidine Low_complexity Low_complexity 4 57 0 888 239 110 29 chr21 41067113 41067385 -3840185 + MLT1A2 LTR MaLR 3 296 -78 1793 191 138 7 chr21 41067582 41068016 -3839554 + L1MC4 LINE L1 6459 6949 -1093 16930 134 64 16 chr21 41068017 41068120 -3839450 + L1M1 LINE L1 14 111 -7454 1941 154 0 0 chr21 41068120 41068437 -3839133 + AluSx SINE Alu 1 312 0 16930 134 64 16 chr21 41068437 41071140 -3836430 + L1M1 LINE L1 111 2955 -4610 926 107 107 0 chr21 41071236 41071405 -3836165 + L1M1 LINE L1 2460 2646 -4919 8274 189 30 65 chr21 41071409 41072722 -3834848 + L1M1 LINE L1 2960 4317 -3248 788 112 0 32 chr21 41072722 41072847 -3834723 + AluSg/x SINE Alu 192 312 0 8274 189 30 65 chr21 41072847 41073047 -3834523 + L1M1 LINE L1 4317 4522 -3043 1990 100 14 7 chr21 41073047 41073337 -3834233 + AluSx SINE Alu 21 312 0 8274 189 30 65 chr21 41073337 41074903 -3832667 + L1M1 LINE L1 4522 5925 -1640 2083 120 0 0 chr21 41074903 41075194 -3832376 + AluSx SINE Alu 7 297 -15 8274 189 30 65 chr21 41075194 41075440 -3832130 + L1M1 LINE L1 5925 6178 -1387 259 200 0 0 chr21 41075440 41075480 -3832090 - Alu SINE Alu -261 42 3 6894 113 15 14 chr21 41075519 41075704 -3831866 - L1MA2 LINE L1 0 6304 6121 2196 93 3 0 chr21 41075704 41075993 -3831577 + AluSp SINE Alu 1 290 -23 198 0 0 0 chr21 41075997 41076019 -3831551 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 6894 113 15 14 chr21 41076019 41077076 -3830494 - L1MA2 LINE L1 -185 6119 5054 1936 122 20 3 chr21 41077076 41077246 -3830324 - AluSx SINE Alu -11 301 122 207 0 0 0 chr21 41077246 41077269 -3830301 + (TG)n Simple_repeat Simple_repeat 2 24 0 1936 122 20 3 chr21 41077269 41077394 -3830176 - AluSx SINE Alu -190 122 1 6894 113 15 14 chr21 41077394 41077435 -3830135 - L1MA2 LINE L1 -1250 5054 5015 1377 133 0 35 chr21 41077437 41077663 -3829907 - AluJb SINE Alu -2 310 93 1774 147 0 7 chr21 41077670 41077977 -3829593 - L1MA2 LINE L1 -1133 5013 4709 1440 275 37 58 chr21 41077978 41078546 -3829024 + L1MC4 LINE L1 7346 7901 -141 231 350 60 0 chr21 41078729 41078846 -3828724 - L2 LINE L2 0 3313 3190 2095 128 0 3 chr21 41078863 41079175 -3828395 - AluSx SINE Alu -1 311 1 1922 149 0 0 chr21 41079177 41079478 -3828092 - AluSx SINE Alu -9 303 3 2197 86 10 7 chr21 41079953 41080255 -3827315 - AluSq SINE Alu -10 303 1 743 239 44 55 chr21 41080260 41080497 -3827073 - L1ME LINE L1 -341 5823 5588 771 220 50 6 chr21 41080497 41080656 -3826914 - FRAM SINE Alu 0 166 1 743 239 44 55 chr21 41080656 41080690 -3826880 - L1ME LINE L1 -576 5588 5555 1716 128 62 14 chr21 41080722 41081010 -3826560 - AluSq SINE Alu -11 302 1 1458 115 10 5 chr21 41081048 41081257 -3826313 - AluSx SINE Alu -102 210 1 294 280 40 32 chr21 41081979 41082104 -3825466 - L1ME3A LINE L1 -146 6024 5899 1211 135 0 0 chr21 41082216 41082401 -3825169 + AluSc SINE Alu 125 309 0 715 292 106 6 chr21 41082403 41082715 -3824855 + L1MC4a LINE L1 7259 7601 -207 539 279 50 12 chr21 41082911 41083072 -3824498 - L1ME2 LINE L1 -12 6152 5986 207 162 0 0 chr21 41083314 41083351 -3824219 + (TG)n Simple_repeat Simple_repeat 1 37 0 455 148 178 20 chr21 41083761 41083862 -3823708 - FLAM_C SINE Alu -16 127 11 2603 257 99 66 chr21 41083870 41084491 -3823079 - L1MC4a LINE L1 -809 6999 6400 1538 101 55 0 chr21 41084491 41084709 -3822861 + MER30 DNA MER1_type 1 230 0 2603 257 99 66 chr21 41084709 41084788 -3822782 - L1MC4a LINE L1 -1408 6400 6325 1713 119 76 7 chr21 41084788 41085065 -3822505 - AluSx SINE Alu -16 296 1 2603 257 99 66 chr21 41085065 41085535 -3822035 - L1MC4a LINE L1 -1483 6325 5789 1872 113 17 31 chr21 41086967 41087258 -3820312 - AluSx SINE Alu -21 291 5 2051 97 17 3 chr21 41087290 41087578 -3819992 + AluSq SINE Alu 1 292 -21 439 175 50 0 chr21 41087578 41087658 -3819912 + FLAM_C SINE Alu 37 120 -23 270 191 26 33 chr21 41088742 41088894 -3818676 + (TG)n Simple_repeat Simple_repeat 1 151 0 454 263 34 6 chr21 41088950 41089125 -3818445 + (TG)n Simple_repeat Simple_repeat 1 180 0 484 216 45 23 chr21 41089143 41089366 -3818204 + (TG)n Simple_repeat Simple_repeat 1 228 0 466 246 40 11 chr21 41089381 41089556 -3818014 + (TG)n Simple_repeat Simple_repeat 1 180 0 351 249 61 18 chr21 41089571 41089736 -3817834 + (TG)n Simple_repeat Simple_repeat 1 172 0 425 302 84 60 chr21 41091179 41091715 -3815855 + L1ME3A LINE L1 321 869 -5527 321 163 0 0 chr21 41091715 41091764 -3815806 - Tigger5 DNA MER2_type 0 2323 2275 364 254 86 106 chr21 41091815 41091958 -3815612 + L1ME3A LINE L1 868 1012 -5384 1889 153 14 0 chr21 41091958 41092129 -3815441 - AluJo SINE Alu -4 308 130 1924 114 50 4 chr21 41092129 41092410 -3815160 - AluSg SINE Alu -16 294 1 1889 153 14 0 chr21 41092410 41092532 -3815038 - AluJo SINE Alu -182 130 11 364 254 86 106 chr21 41092532 41092691 -3814879 + L1ME3A LINE L1 1012 1164 -5232 502 213 24 87 chr21 41093414 41093637 -3813933 - LTR41 LTR ERVL -548 247 5 567 249 79 17 chr21 41093655 41093926 -3813644 + L1ME3A LINE L1 2750 3054 -3161 523 297 36 0 chr21 41093932 41094097 -3813473 - MLT1F LTR MaLR -200 342 172 962 214 60 54 chr21 41094300 41094402 -3813168 + L1ME3A LINE L1 5651 5751 -488 1696 164 27 0 chr21 41094402 41094700 -3812870 + AluJo SINE Alu 1 306 -6 962 214 60 54 chr21 41094700 41094914 -3812656 + L1ME3A LINE L1 5751 5969 -270 263 222 91 61 chr21 41094945 41095044 -3812526 + L1ME3A LINE L1 6065 6166 -73 802 172 20 7 chr21 41095118 41095269 -3812301 + AluJb SINE Alu 137 289 -23 2034 79 3 56 chr21 41095295 41095600 -3811970 + AluSx SINE Alu 5 293 -19 788 225 104 16 chr21 41096137 41096386 -3811184 - MER58 DNA MER1_type -67 274 4 225 188 39 72 chr21 41097143 41097324 -3810246 + (CACG)n Simple_repeat Simple_repeat 1 175 0 311 208 33 49 chr21 41097580 41097763 -3809807 + (CA)n Simple_repeat Simple_repeat 1 180 0 319 293 107 37 chr21 41098970 41099212 -3808358 + MLT1E LTR MaLR 86 344 -223 403 284 9 0 chr21 41099249 41099365 -3808205 + MLT1E LTR MaLR 469 585 -8 2401 61 3 0 chr21 41101185 41101482 -3806088 + AluSp SINE Alu 1 298 -15 388 307 102 0 chr21 41102363 41102539 -3805031 + MLT1F LTR MaLR 348 541 -1 787 150 189 0 chr21 41103542 41103695 -3803875 + AluSg/x SINE Alu 117 298 -14 836 196 17 17 chr21 41104946 41105119 -3802451 - FAM SINE Alu -2 173 1 264 122 0 0 chr21 41105317 41105358 -3802212 + (CA)n Simple_repeat Simple_repeat 1 41 0 253 235 43 112 chr21 41105374 41105561 -3802009 + HAL1 LINE L1 7 180 -2327 877 308 124 49 chr21 41105772 41106368 -3801202 + HAL1 LINE L1 557 1107 -1400 1619 156 31 7 chr21 41106368 41106657 -3800913 + AluSx SINE Alu 1 296 -16 877 308 124 49 chr21 41106657 41107182 -3800388 + HAL1 LINE L1 1107 1762 -745 724 177 15 0 chr21 41107685 41107815 -3799755 + FLAM_A SINE Alu 2 133 0 223 277 15 31 chr21 41109320 41109385 -3798185 - L2 LINE L2 0 3272 3209 2020 74 0 15 chr21 41109581 41109852 -3797718 + AluSg SINE Alu 1 267 -43 246 207 0 0 chr21 41109869 41109927 -3797643 + GA-rich Low_complexity Low_complexity 4 61 0 2551 42 0 6 chr21 41112376 41112689 -3794881 + AluY SINE Alu 1 311 0 2301 118 0 0 chr21 41115660 41115965 -3791605 + AluSx SINE Alu 1 305 -7 1081 204 40 0 chr21 41116026 41116252 -3791318 - MER46A DNA MER2_type 0 236 2 809 161 0 15 chr21 41116281 41116411 -3791159 - FLAM_C SINE Alu -10 133 6 543 231 195 0 chr21 41117190 41117385 -3790185 + MER77 LTR ERV1 145 377 -228 335 244 171 32 chr21 41118151 41118274 -3789296 + L1M LINE L1 5254 5393 -2415 2298 93 0 13 chr21 41118278 41118580 -3788990 + AluSq SINE Alu 1 298 -15 2225 126 0 0 chr21 41118620 41118922 -3788648 + AluSx SINE Alu 1 302 -10 2231 110 3 7 chr21 41119057 41119357 -3788213 + AluSq SINE Alu 1 299 -14 1593 178 67 29 chr21 41119480 41119856 -3787714 + MLT1B LTR MaLR 1 390 0 230 267 35 60 chr21 41120246 41120362 -3787208 + HAL1 LINE L1 2386 2498 -9 2177 111 3 17 chr21 41120542 41120840 -3786730 - AluSq SINE Alu -19 294 1 2142 134 3 10 chr21 41120879 41121193 -3786377 + AluSx SINE Alu 1 312 0 2235 110 0 7 chr21 41121204 41121503 -3786067 + AluSq SINE Alu 1 297 -16 222 368 0 0 chr21 41121909 41121977 -3785593 + MIR SINE MIR 162 229 -33 258 214 0 0 chr21 41122585 41122627 -3784943 + AluJo SINE Alu 1 42 -260 7923 71 8 1 chr21 41122627 41123677 -3783893 + MER11C LTR ERVK 1 1057 -14 1592 162 11 25 chr21 41123709 41123823 -3783747 + AluJo SINE Alu 30 144 -168 2282 86 0 17 chr21 41123823 41124114 -3783456 + AluSc SINE Alu 3 288 -21 1592 162 11 25 chr21 41124114 41124283 -3783287 + AluJo SINE Alu 144 309 -3 1868 139 52 7 chr21 41124468 41124755 -3782815 - AluSx SINE Alu -11 301 2 2145 132 0 0 chr21 41124770 41125065 -3782505 - AluSx SINE Alu -17 295 1 2066 122 24 0 chr21 41125375 41125663 -3781907 - AluSp SINE Alu -18 295 1 2228 128 3 0 chr21 41125690 41125994 -3781576 - AluSx SINE Alu -7 305 1 2566 55 10 3 chr21 41126314 41126621 -3780949 + AluY SINE Alu 1 309 -2 1750 120 0 4 chr21 41128454 41128696 -3778874 + AluSx SINE Alu 56 296 -16 2169 52 89 4 chr21 41129486 41129757 -3777813 - AluY SINE Alu -17 294 1 180 0 0 0 chr21 41129950 41129970 -3777600 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2175 104 14 0 chr21 41130352 41130640 -3776930 - AluSq SINE Alu -9 304 13 890 68 0 0 chr21 41130643 41130746 -3776824 - AluSp SINE Alu -210 103 1 2347 106 3 0 chr21 41130832 41131133 -3776437 + AluSq SINE Alu 1 302 -11 2207 126 0 13 chr21 41131232 41131368 -3776202 + AluSx SINE Alu 1 137 -175 2458 97 0 0 chr21 41131368 41131677 -3775893 + AluSx SINE Alu 1 309 -3 2207 126 0 13 chr21 41131677 41131849 -3775721 + AluSx SINE Alu 137 305 -7 1186 243 105 32 chr21 41131986 41132397 -3775173 + MLT1C LTR MaLR 1 441 -26 1840 154 205 24 chr21 41132397 41132851 -3774719 - L1MB7 LINE L1 -65 6119 5584 453 100 0 0 chr21 41132866 41132926 -3774644 + AluSp/q SINE Alu 200 259 -54 2274 102 0 0 chr21 41132926 41133210 -3774360 + AluSg SINE Alu 9 292 -18 570 206 24 11 chr21 41133212 41133328 -3774242 - L1MB7 LINE L1 -576 5598 5473 2078 141 3 0 chr21 41133328 41133625 -3773945 - AluSx SINE Alu -12 300 3 570 206 24 11 chr21 41133625 41133665 -3773905 - L1MB7 LINE L1 -701 5473 5435 2230 90 14 0 chr21 41133880 41134168 -3773402 + AluSq SINE Alu 1 292 -21 1071 247 0 9 chr21 41134280 41134503 -3773067 - AluJo SINE Alu -46 266 46 2363 97 7 0 chr21 41134508 41134808 -3772762 - AluSx SINE Alu -10 302 1 22 0 0 0 chr21 41134920 41134942 -3772628 + AT_rich Low_complexity Low_complexity 1 22 0 274 287 86 0 chr21 41134961 41135115 -3772455 - L1M4 LINE L1 -1751 4395 4232 393 174 10 41 chr21 41135249 41135347 -3772223 - Tigger2 DNA MER2_type -2379 339 245 2347 101 3 0 chr21 41135536 41135843 -3771727 - AluSp SINE Alu -5 308 1 864 148 14 28 chr21 41135846 41135988 -3771582 - FLAM_C SINE Alu -1 142 3 2318 165 39 38 chr21 41135999 41136270 -3771300 - Tigger2 DNA MER2_type -2183 535 261 1731 99 0 17 chr21 41136270 41136503 -3771067 + AluSg/x SINE Alu 84 312 0 2318 165 39 38 chr21 41136503 41136765 -3770805 - Tigger2 DNA MER2_type -2457 261 1 1958 145 0 3 chr21 41136828 41137136 -3770434 + AluJb SINE Alu 1 307 0 2294 109 0 10 chr21 41137251 41137555 -3770015 - AluSx SINE Alu -11 301 1 1681 93 0 0 chr21 41137629 41137834 -3769736 - AluSx SINE Alu -107 205 1 247 323 122 9 chr21 41137922 41138151 -3769419 - L1MEd LINE L1 -5659 460 206 263 274 86 17 chr21 41138176 41138293 -3769277 - L1MEd LINE L1 -5954 165 41 570 160 0 0 chr21 41138299 41138399 -3769171 - AluSg/x SINE Alu -12 297 198 721 224 41 0 chr21 41138493 41138640 -3768930 + FRAM SINE Alu 6 158 -18 2289 85 3 10 chr21 41138805 41139098 -3768472 + AluSg SINE Alu 1 291 -19 2195 112 3 20 chr21 41139592 41139895 -3767675 + AluSx SINE Alu 1 298 -14 2342 92 3 0 chr21 41140227 41140519 -3767051 + AluSx SINE Alu 1 293 -19 2526 63 0 13 chr21 41140523 41140838 -3766732 + AluY SINE Alu 1 311 0 1806 114 7 29 chr21 41142478 41142751 -3764819 + AluSx SINE Alu 1 267 -45 21 0 0 0 chr21 41142751 41142772 -3764798 + AT_rich Low_complexity Low_complexity 1 21 0 323 236 56 22 chr21 41142866 41142955 -3764615 + L1MC4 LINE L1 6614 6705 -1337 * 340 250 87 19 chr21 41142943 41143047 -3764523 + L1MCa LINE L1 1942 2052 -4374 281 15 90 15 chr21 41143047 41143114 -3764456 + (TA)n Simple_repeat Simple_repeat 2 73 0 652 178 0 47 chr21 41143114 41143243 -3764327 - AluSg/x SINE Alu -22 290 168 229 225 42 70 chr21 41143415 41143486 -3764084 + L2 LINE L2 3241 3309 -4 2104 121 33 13 chr21 41143628 41143752 -3763818 + AluSx SINE Alu 1 121 -191 2065 143 7 3 chr21 41143752 41144052 -3763518 + AluSx SINE Alu 1 301 -11 2104 121 33 13 chr21 41144052 41144233 -3763337 + AluSx SINE Alu 121 312 0 2055 118 40 20 chr21 41144527 41144703 -3762867 - AluSx SINE Alu -2 310 124 2525 63 17 0 chr21 41144703 41145002 -3762568 - AluY SINE Alu -7 304 1 2055 118 40 20 chr21 41145002 41145129 -3762441 - AluSx SINE Alu -188 124 1 1347 146 48 71 chr21 41145129 41145397 -3762173 + AluJo SINE Alu 27 288 -24 333 0 0 0 chr21 41145958 41145995 -3761575 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1424 92 0 0 chr21 41146050 41146224 -3761346 - AluY SINE Alu -137 174 1 2288 106 0 0 chr21 41146235 41146527 -3761043 - AluY SINE Alu -19 292 1 1061 153 0 44 chr21 41146815 41146998 -3760572 - FRAM SINE Alu -1 175 1 1704 219 0 3 chr21 41147012 41147322 -3760248 - AluJo SINE Alu -3 309 1 2200 99 0 26 chr21 41147826 41147990 -3759580 - AluSp SINE Alu -18 295 141 2363 95 0 0 chr21 41147990 41148294 -3759276 - AluSc SINE Alu -5 304 1 2200 99 0 26 chr21 41148294 41148432 -3759138 - AluSp SINE Alu -172 141 1 1808 181 0 13 chr21 41148467 41148765 -3758805 + AluJb SINE Alu 1 294 -18 2118 133 0 3 chr21 41148773 41149073 -3758497 + AluSx SINE Alu 3 301 -11 2199 107 0 14 chr21 41149712 41150003 -3757567 + AluSq SINE Alu 6 292 -21 1150 135 0 22 chr21 41150003 41150177 -3757393 + AluSg/x SINE Alu 133 304 -6 657 269 40 53 chr21 41150203 41150430 -3757140 - MIR SINE MIR -33 229 6 23 42 0 21 chr21 41150461 41150479 -3757091 + AT_rich Low_complexity Low_complexity 1 18 -29 2436 89 3 6 chr21 41150479 41150792 -3756778 + AluSp SINE Alu 2 313 0 23 42 0 21 chr21 41150792 41150821 -3756749 + AT_rich Low_complexity Low_complexity 18 47 0 1622 135 44 20 chr21 41151290 41151587 -3755983 + MER2 DNA MER2_type 1 304 -41 2118 108 30 10 chr21 41153040 41153337 -3754233 - AluSx SINE Alu -9 303 1 2314 99 0 0 chr21 41153348 41153640 -3753930 - AluSc SINE Alu -17 292 1 2233 99 3 0 chr21 41154056 41154366 -3753204 - AluSq SINE Alu 0 312 2 2088 137 0 0 chr21 41154415 41154715 -3752855 - AluSx SINE Alu -12 300 1 1700 146 24 34 chr21 41155846 41156000 -3751570 - AluJb SINE Alu -20 292 141 1984 156 7 3 chr21 41156000 41156302 -3751268 - AluSx SINE Alu -9 303 1 1700 146 24 34 chr21 41156302 41156442 -3751128 - AluJb SINE Alu -171 141 1 2311 99 0 3 chr21 41156576 41156870 -3750700 + AluSx SINE Alu 1 293 -19 2452 103 0 0 chr21 41157681 41157993 -3749577 - AluSx SINE Alu 0 312 1 2010 127 13 23 chr21 41158237 41158536 -3749034 - AluSg SINE Alu -14 296 1 2057 122 14 0 chr21 41158595 41158882 -3748688 + AluSq SINE Alu 1 291 -22 2230 110 3 3 chr21 41159511 41159802 -3747768 + AluSx SINE Alu 1 291 -21 1080 170 194 0 chr21 41160002 41160255 -3747315 - AluJb SINE Alu 0 302 1 2163 123 3 0 chr21 41160510 41160803 -3746767 + AluSp SINE Alu 1 294 -19 2519 54 0 10 chr21 41161028 41161162 -3746408 + AluY SINE Alu 1 135 -176 2593 62 0 0 chr21 41161162 41161466 -3746104 + AluY SINE Alu 1 304 -7 2519 54 0 10 chr21 41161466 41161625 -3745945 + AluY SINE Alu 135 291 -20 21 0 0 0 chr21 41161625 41161646 -3745924 + AT_rich Low_complexity Low_complexity 1 21 0 258 281 116 82 chr21 41161829 41162096 -3745474 - L2 LINE L2 -12 3260 2985 852 178 17 0 chr21 41162277 41162427 -3745143 - AluSq/x SINE Alu -160 152 7 613 303 50 35 chr21 41162454 41162555 -3745015 + HAL1b LINE L1 570 668 -680 2370 105 3 0 chr21 41162555 41162859 -3744711 + AluSq SINE Alu 1 305 -8 613 303 50 35 chr21 41162859 41163100 -3744470 + HAL1b LINE L1 668 917 -431 2140 148 0 0 chr21 41163138 41163448 -3744122 + AluSx SINE Alu 1 310 -2 755 177 15 0 chr21 41163457 41163587 -3743983 + FLAM_C SINE Alu 1 132 -1 286 114 0 0 chr21 41163753 41163797 -3743773 + Alu SINE Alu 1 44 -259 2317 104 0 0 chr21 41163797 41164095 -3743475 + AluY SINE Alu 1 298 -13 483 227 17 17 chr21 41164101 41164220 -3743350 - LTR23 LTR ERV1 -26 411 293 268 125 54 0 chr21 41164225 41164281 -3743289 - Alu SINE Alu -2 300 242 1839 158 10 10 chr21 41164284 41164587 -3742983 - AluSx SINE Alu -9 303 1 664 83 0 10 chr21 41164607 41164703 -3742867 - AluSg SINE Alu -14 295 201 1061 108 0 0 chr21 41164704 41164834 -3742736 - AluSg SINE Alu -180 130 1 293 185 293 0 chr21 41164837 41164919 -3742651 - FRAM SINE Alu -56 110 53 506 101 101 0 chr21 41164929 41165018 -3742552 + MER4A LTR ERV1 1 98 -566 928 153 7 97 chr21 41165018 41165293 -3742277 + MER4A LTR ERV1 261 569 -95 2392 126 75 5 chr21 41165293 41165665 -3741905 - MER48 LTR ERV1 0 398 1 5697 107 59 4 chr21 41165665 41166554 -3741016 - HERVH48 LTR ERV1 0 6667 5794 34842 112 33 29 chr21 41167659 41171010 -3736560 - HERVH48 LTR ERV1 -831 5823 2490 2664 46 0 0 chr21 41171010 41171317 -3736253 + AluY SINE Alu 1 307 -4 34842 112 33 29 chr21 41171317 41173500 -3734070 - HERVH48 LTR ERV1 -4164 2490 257 2382 84 0 3 chr21 41173500 41173796 -3733774 - AluSg SINE Alu -15 295 1 34842 112 33 29 chr21 41173796 41174054 -3733516 - HERVH48 LTR ERV1 -6397 257 2 2282 146 73 5 chr21 41174058 41174428 -3733142 - MER48 LTR ERV1 -3 395 1 474 146 0 12 chr21 41174429 41174511 -3733059 + MER4A LTR ERV1 566 646 -18 2457 58 0 0 chr21 41174511 41174803 -3732767 + AluY SINE Alu 1 292 -19 580 196 0 0 chr21 41174830 41174922 -3732648 - AluS SINE Alu -220 93 2 1732 130 0 118 chr21 41174933 41175272 -3732298 - AluSx SINE Alu -13 299 1 2624 33 3 3 chr21 41175303 41175607 -3731963 - AluY SINE Alu -7 304 1 921 171 138 34 chr21 41175608 41175877 -3731693 - LTR23 LTR ERV1 -132 305 9 1710 109 176 15 chr21 41175970 41176147 -3731423 - MER4A LTR ERV1 0 664 517 2354 93 3 0 chr21 41176147 41176458 -3731112 + AluSx SINE Alu 1 312 0 1710 109 176 15 chr21 41176458 41176791 -3730779 - MER4A LTR ERV1 -147 517 1 691 249 23 57 chr21 41176798 41176828 -3730742 + LTR8 LTR ERV1 1 30 -661 2641 55 3 0 chr21 41176828 41177138 -3730432 + AluY SINE Alu 1 311 0 691 249 23 57 chr21 41177138 41177372 -3730198 + LTR8 LTR ERV1 30 256 -435 2086 126 0 0 chr21 41177399 41177707 -3729863 - AluSg SINE Alu 0 313 6 192 111 0 0 chr21 41177720 41177756 -3729814 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2048 149 0 9 chr21 41177758 41178073 -3729497 - AluJb SINE Alu 0 312 1 487 164 29 39 chr21 41178104 41178180 -3729390 + LTR8A LTR ERV1 287 363 -364 2091 115 28 0 chr21 41178180 41178466 -3729104 - AluSq SINE Alu -17 296 3 487 164 29 39 chr21 41178466 41178493 -3729077 + LTR8A LTR ERV1 363 389 -338 1665 168 168 17 chr21 41178507 41178858 -3728712 - MER4A LTR ERV1 0 664 261 541 82 59 0 chr21 41178866 41178951 -3728619 - MER4A LTR ERV1 -574 90 1 329 167 20 118 chr21 41178961 41179063 -3728507 + LTR8A LTR ERV1 404 495 -232 735 186 0 16 chr21 41179079 41179203 -3728367 - AluJ SINE Alu -64 248 127 2036 108 47 0 chr21 41179220 41179497 -3728073 - AluSp SINE Alu -22 291 2 206 81 27 0 chr21 41179497 41179534 -3728036 + (TTG)n Simple_repeat Simple_repeat 1 38 0 2127 109 0 0 chr21 41179534 41179810 -3727760 - AluSx SINE Alu -31 281 6 943 121 7 14 chr21 41179814 41179955 -3727615 - AluJ SINE Alu -170 142 3 697 217 85 72 chr21 41179958 41180193 -3727377 + LTR8A LTR ERV1 482 719 -8 345 222 0 0 chr21 41180442 41180514 -3727056 - AluJ/FRAM SINE Alu 0 302 231 2614 146 73 24 chr21 41180515 41180982 -3726588 + LTR2B LTR ERV1 1 490 0 2745 94 8 0 chr21 41180982 41181366 -3726204 + Harlequin LTR ERV1 1 387 -6509 * 4395 72 3 3 chr21 41181359 41181946 -3725624 + Harlequin LTR ERV1 263 849 -6047 2305 44 3 28 chr21 41181931 41182251 -3725319 + Harlequin LTR ERV1 1036 1347 -5549 * 13067 131 10 1 chr21 41182243 41184253 -3723317 + Harlequin LTR ERV1 4247 6274 -622 1400 50 0 0 chr21 41184253 41184413 -3723157 + AluY SINE Alu 142 301 -10 3942 112 14 52 chr21 41184413 41184996 -3722574 + Harlequin LTR ERV1 6263 6820 -76 4771 34 4 0 chr21 41184996 41185552 -3722018 + LTR6B LTR ERV1 1 558 0 3942 112 14 52 chr21 41185552 41185627 -3721943 + Harlequin LTR ERV1 6820 6896 0 2738 138 62 23 chr21 41185627 41186097 -3721473 + LTR2B LTR ERV1 1 488 -2 287 184 0 0 chr21 41186099 41186147 -3721423 - FRAM SINE Alu -69 97 50 513 112 0 84 chr21 41186147 41186254 -3721316 + MER4A LTR ERV1 1 98 -566 1628 124 6 75 chr21 41186254 41186610 -3720960 + MER4A LTR ERV1 261 650 -14 481 144 22 44 chr21 41186611 41186680 -3720890 - AluSc SINE Alu -107 202 134 823 155 0 0 chr21 41186680 41186809 -3720761 - AluJo/FLAM SINE Alu -173 129 1 481 144 22 44 chr21 41186809 41186829 -3720741 - AluSc SINE Alu -175 134 115 2074 132 0 3 chr21 41187342 41187637 -3719933 - AluJb SINE Alu -13 299 6 2508 86 0 6 chr21 41187820 41188134 -3719436 - AluSp SINE Alu -1 312 1 933 122 34 0 chr21 41188407 41188555 -3719015 - MER41A LTR ERV1 0 554 402 2264 97 10 0 chr21 41189032 41189330 -3718240 - AluSp SINE Alu -12 301 1 2060 143 0 0 chr21 41189333 41189627 -3717943 - AluSx SINE Alu -18 294 1 1363 89 0 5 chr21 41189793 41189984 -3717586 + MER41A LTR ERV1 1 190 -364 2212 98 10 3 chr21 41189985 41190281 -3717289 + AluSp SINE Alu 1 298 -15 363 216 29 29 chr21 41190281 41190448 -3717122 - MER92B LTR ERV1 -141 413 151 1842 178 3 0 chr21 41190460 41190753 -3716817 + AluJo SINE Alu 5 298 -14 2752 125 121 0 chr21 41190798 41191286 -3716284 + LTR10A LTR ERV1 1 547 -62 2062 141 0 0 chr21 41191708 41192007 -3715563 - AluY SINE Alu -12 299 1 36049 73 6 8 chr21 41192008 41196865 -3710705 - Harlequin LTR ERV1 -243 6653 1807 8462 63 15 99 chr21 41196852 41198247 -3709323 - Harlequin LTR ERV1 -5474 1422 145 * 989 227 251 20 chr21 41198249 41200110 -3707460 + SATR1 Satellite Satellite 1 2291 -96 1126 208 259 2 chr21 41200217 41201015 -3706555 + SATR1 Satellite Satellite 1 1003 -3 1197 189 243 24 chr21 41201057 41201432 -3706138 + SATR1 Satellite Satellite 12 468 -2 727 227 241 50 chr21 41201473 41201834 -3705736 + SATR1 Satellite Satellite 14 443 -27 2203 168 112 8 chr21 41201907 41203302 -3704268 + SATR1 Satellite Satellite 1 1539 0 1887 194 113 18 chr21 41203331 41203960 -3703610 + SATR1 Satellite Satellite 1 688 -32 3573 91 4 2 chr21 41203960 41204457 -3703113 - HERVE LTR ERV1 -2636 5177 4680 2290 99 0 7 chr21 41204648 41204952 -3702618 + AluSg SINE Alu 1 302 -8 1227 121 0 0 chr21 41204954 41205128 -3702442 + AluSg/x SINE Alu 132 305 -7 189 0 0 0 chr21 41205292 41205313 -3702257 + (T)n Simple_repeat Simple_repeat 1 21 0 357 154 31 0 chr21 41205326 41205391 -3702179 + LTR26E LTR ERV1 1 67 -555 1495 109 4 47 chr21 41205422 41205698 -3701872 + MER4A LTR ERV1 66 329 -335 1141 94 7 198 chr21 41205735 41205873 -3701697 + MER4A LTR ERV1 312 475 -397 2002 140 3 0 chr21 41205873 41206166 -3701404 + AluSx SINE Alu 1 294 -18 1141 94 7 198 chr21 41206166 41206439 -3701131 + MER4A LTR ERV1 475 802 -70 1615 104 0 9 chr21 41206439 41206660 -3700910 + AluSg/x SINE Alu 83 301 -9 1141 94 7 198 chr21 41206660 41206717 -3700853 + MER4A LTR ERV1 802 868 -4 1912 204 136 12 chr21 41206718 41206878 -3700692 + LTR26E LTR ERV1 60 199 -423 2246 110 3 0 chr21 41206878 41207169 -3700401 + AluSq SINE Alu 1 292 -21 1912 204 136 12 chr21 41207169 41207182 -3700388 + LTR26E LTR ERV1 199 209 -413 2292 50 57 0 chr21 41207182 41207464 -3700106 + AluY SINE Alu 1 298 -13 1912 204 136 12 chr21 41207464 41207790 -3699780 + LTR26E LTR ERV1 209 622 0 1407 168 111 43 chr21 41207907 41207955 -3699615 + MER34C LTR ERV1 36 79 -506 2285 84 11 3 chr21 41207955 41208272 -3699298 - AluSp SINE Alu 0 319 1 1407 168 111 43 chr21 41208272 41208568 -3699002 + MER34C LTR ERV1 79 405 -180 2246 121 3 3 chr21 41208568 41208873 -3698697 - AluSx SINE Alu -7 305 1 1681 137 23 19 chr21 41208879 41209135 -3698435 - AluJb SINE Alu -20 292 36 885 163 18 30 chr21 41209136 41209302 -3698268 - LTR8 LTR ERV1 -2 689 526 221 0 35 0 chr21 41209303 41209332 -3698238 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2005 107 33 4 chr21 41209333 41209605 -3697965 - AluSx SINE Alu -32 280 1 1565 117 5 0 chr21 41209605 41209819 -3697751 - AluSg/x SINE Alu -14 298 84 1102 96 0 0 chr21 41209819 41209954 -3697616 - AluSq/x SINE Alu -178 135 1 2459 92 0 0 chr21 41209965 41210271 -3697299 - AluY SINE Alu -5 306 1 2888 132 11 52 chr21 41210271 41210824 -3696746 - LTR8 LTR ERV1 -161 530 1 632 212 81 15 chr21 41210824 41211016 -3696554 + MER34C LTR ERV1 381 585 0 1044 141 85 0 chr21 41211380 41211410 -3696160 - AluSg/x SINE Alu -1 308 282 828 80 0 0 chr21 41211410 41211523 -3696047 + (TCCCC)n Simple_repeat Simple_repeat 4 116 0 1044 141 85 0 chr21 41211523 41211669 -3695901 - AluSg/x SINE Alu -27 282 125 2183 144 0 0 chr21 41211718 41212031 -3695539 + AluSq SINE Alu 1 313 0 774 178 8 0 chr21 41212060 41212189 -3695381 + AluSq/x SINE Alu 2 131 -181 2383 113 0 0 chr21 41212195 41212506 -3695064 + AluSx SINE Alu 1 311 -1 1594 158 69 90 chr21 41213122 41213545 -3694025 - MLT2D LTR ERVL 0 414 1 850 158 15 0 chr21 41213826 41213959 -3693611 - AluJo SINE Alu -177 135 1 1946 160 0 7 chr21 41214011 41214311 -3693259 + AluJb SINE Alu 1 298 -14 2072 154 0 3 chr21 41214343 41214642 -3692928 + AluSx SINE Alu 1 298 -14 2400 48 0 38 chr21 41214676 41214968 -3692602 - AluY SINE Alu -30 281 1 797 182 0 53 chr21 41214972 41215142 -3692428 - AluJo/FRAM SINE Alu -5 297 137 1038 152 0 19 chr21 41215144 41215326 -3692244 - AluSg/x SINE Alu 0 312 134 2418 96 0 10 chr21 41215326 41215493 -3692077 - AluSx SINE Alu -12 300 136 1968 116 94 0 chr21 41215493 41215769 -3691801 - AluSg SINE Alu -8 302 1 2418 96 0 10 chr21 41215769 41215904 -3691666 - AluSx SINE Alu -176 136 1 2325 105 3 0 chr21 41215989 41216285 -3691285 + AluSp SINE Alu 1 297 -16 1838 101 0 20 chr21 41216370 41216617 -3690953 + AluSq SINE Alu 1 242 -71 1444 78 21 21 chr21 41216779 41216972 -3690598 - AluSg1 SINE Alu -116 193 1 1173 85 0 28 chr21 41216972 41217149 -3690421 - MER41A LTR ERV1 -377 177 6 647 140 224 168 chr21 41217166 41217305 -3690265 - AluJb SINE Alu 0 302 172 2502 48 0 10 chr21 41217305 41217600 -3689970 + AluY SINE Alu 1 292 -19 647 140 224 168 chr21 41217600 41217746 -3689824 - AluJb SINE Alu -130 172 1 1462 111 0 37 chr21 41217756 41217872 -3689698 - AluSg/x SINE Alu -13 299 180 2259 175 103 29 chr21 41217872 41218397 -3689173 + LTR6A LTR ERV1 1 564 0 1462 111 0 37 chr21 41218397 41218451 -3689119 - AluSg/x SINE Alu -132 180 136 2255 114 7 7 chr21 41218451 41218759 -3688811 - AluSq SINE Alu -4 309 2 1462 111 0 37 chr21 41218759 41218803 -3688767 - AluSg/x SINE Alu -176 136 92 1626 145 0 0 chr21 41218803 41219031 -3688539 + AluSg/x SINE Alu 66 293 -17 2654 49 0 0 chr21 41219102 41219408 -3688162 - AluY SINE Alu -5 306 1 2826 112 44 0 chr21 41219650 41220086 -3687484 + MER41B LTR ERV1 1 455 -180 998 147 30 20 chr21 41220130 41220328 -3687242 + MER41B LTR ERV1 436 635 0 398 179 9 75 chr21 41220674 41220778 -3686792 + MER45A DNA AcHobo 38 134 -44 1203 151 0 0 chr21 41220778 41220970 -3686600 - MER41B LTR ERV1 -2 633 442 2455 153 18 11 chr21 41221000 41221098 -3686472 - MER41B LTR ERV1 -182 453 357 2173 109 7 10 chr21 41221098 41221400 -3686170 - AluSx SINE Alu -11 301 1 2455 153 18 11 chr21 41221400 41221751 -3685819 - MER41B LTR ERV1 -278 357 1 31 44 0 0 chr21 41222990 41223035 -3684535 + GC_rich Low_complexity Low_complexity 1 45 0 244 186 0 35 chr21 41223237 41223323 -3684247 + (CCG)n Simple_repeat Simple_repeat 2 84 0 244 215 15 0 chr21 41223376 41223441 -3684129 + G-rich Low_complexity Low_complexity 3 68 0 328 177 35 26 chr21 41223593 41223706 -3683864 + (CGGGG)n Simple_repeat Simple_repeat 2 115 0 8754 132 109 25 chr21 41224641 41226089 -3681481 - Tigger1 DNA MER2_type 0 2418 1093 2147 111 19 10 chr21 41226089 41226396 -3681174 - AluSq SINE Alu -3 310 1 8754 132 109 25 chr21 41226396 41226580 -3680990 - Tigger1 DNA MER2_type -1325 1093 926 1917 138 47 0 chr21 41226580 41226856 -3680714 - AluSx SINE Alu -23 289 1 8754 132 109 25 chr21 41226856 41226917 -3680653 - Tigger1 DNA MER2_type -1492 926 582 2449 103 7 0 chr21 41227025 41227335 -3680235 - AluSx SINE Alu 0 312 1 532 155 0 19 chr21 41227335 41227429 -3680141 - FLAM_A SINE Alu -176 135 42 1200 238 0 59 chr21 41227462 41227769 -3679801 - AluJo SINE Alu -23 289 1 1172 153 27 18 chr21 41227771 41227993 -3679577 - Tigger1 DNA MER2_type -2181 237 14 2500 76 0 0 chr21 41228012 41228315 -3679255 + AluY SINE Alu 1 303 -8 2099 120 7 3 chr21 41228642 41228943 -3678627 + AluSx SINE Alu 1 302 -10 312 230 145 13 chr21 41229163 41229315 -3678255 - Charlie4a DNA MER1_type -93 415 244 300 206 29 0 chr21 41229361 41229429 -3678141 - Charlie4a DNA MER1_type -351 157 88 961 186 19 0 chr21 41230079 41230290 -3677280 - AluJb SINE Alu 0 332 119 2539 73 0 3 chr21 41230999 41231299 -3676271 + AluSp SINE Alu 1 299 -14 2025 138 0 24 chr21 41231364 41231661 -3675909 - AluSx SINE Alu -22 290 1 3241 176 22 0 chr21 41231673 41232297 -3675273 - L1MB3 LINE L1 -2 6181 5544 1238 185 57 30 chr21 41232305 41232603 -3674967 - L1M3 LINE L1 -570 5613 5308 354 45 0 0 chr21 41232617 41232661 -3674909 + (TG)n Simple_repeat Simple_repeat 2 45 0 627 160 0 69 chr21 41232661 41232792 -3674778 - AluJb SINE Alu -190 122 1 2410 102 3 0 chr21 41232934 41233239 -3674331 - AluSp SINE Alu -7 306 1 2455 82 3 13 chr21 41233523 41233838 -3673732 - AluSx SINE Alu 0 312 1 2035 152 0 10 chr21 41233840 41234186 -3673384 - AluSx SINE Alu 0 312 1 2271 128 0 6 chr21 41234268 41234581 -3672989 + AluSx SINE Alu 1 311 -1 2130 136 0 0 chr21 41234772 41235067 -3672503 + AluSg SINE Alu 1 295 -15 2491 79 3 3 chr21 41235651 41235956 -3671614 + AluSp SINE Alu 1 305 -8 240 35 0 0 chr21 41235956 41235985 -3671585 + (TA)n Simple_repeat Simple_repeat 2 30 0 685 196 147 16 chr21 41236086 41236163 -3671407 + MER58C DNA MER1_type 1 67 -2353 2570 65 0 3 chr21 41236163 41236469 -3671101 - AluY SINE Alu -6 305 1 685 196 147 16 chr21 41236469 41236575 -3670995 + MER58C DNA MER1_type 67 208 -7 2346 102 10 0 chr21 41236597 41236900 -3670670 - AluSg SINE Alu -4 306 1 700 156 49 0 chr21 41237708 41237830 -3669740 - FLAM_C SINE Alu -5 128 1 2124 117 7 10 chr21 41237972 41238270 -3669300 - AluSx SINE Alu -15 297 1 1974 157 7 0 chr21 41238368 41238673 -3668897 + AluJb SINE Alu 1 307 -5 945 103 24 0 chr21 41238682 41238808 -3668762 + AluSg/x SINE Alu 150 278 -32 233 57 29 0 chr21 41238808 41238843 -3668727 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 231 250 26 40 chr21 41238918 41238994 -3668576 + L1MC/D LINE L1 5857 5931 -1877 1132 238 59 59 chr21 41239130 41239674 -3667896 - MER39 LTR ERV1 -2 705 1 706 169 15 0 chr21 41239757 41239887 -3667683 + FLAM_C SINE Alu 2 133 0 2403 82 0 25 chr21 41239996 41240315 -3667255 + AluY SINE Alu 1 311 0 200 176 0 0 chr21 41240415 41240449 -3667121 + (CTTA)n Simple_repeat Simple_repeat 4 37 0 239 184 0 0 chr21 41240455 41240493 -3667077 - AluSq/x SINE Alu -15 151 114 747 230 177 0 chr21 41241004 41241252 -3666318 - MLT1G LTR MaLR -42 548 257 529 253 48 38 chr21 41241529 41241739 -3665831 - MLT1H1 LTR MaLR -315 280 25 186 71 0 0 chr21 41242198 41242226 -3665344 + (T)n Simple_repeat Simple_repeat 1 28 0 2295 111 3 0 chr21 41242277 41242583 -3664987 - AluSx SINE Alu -5 307 1 2214 126 0 19 chr21 41242583 41242893 -3664677 - AluJb SINE Alu -8 304 1 950 156 0 0 chr21 41242893 41243028 -3664542 - AluSq/x SINE Alu -177 135 1 401 287 152 42 chr21 41243141 41243451 -3664119 - L1MC5 LINE L1 -100 7861 7518 2391 116 0 0 chr21 41243463 41243773 -3663797 - AluSx SINE Alu -2 310 1 389 197 39 47 chr21 41243789 41243916 -3663654 - L1MC4 LINE L1 -494 7548 7423 815 160 84 52 chr21 41243918 41243947 -3663623 - L1MC4a LINE L1 -570 7238 7211 1745 187 7 3 chr21 41243947 41244247 -3663323 + AluJb SINE Alu 1 301 -11 815 160 84 52 chr21 41244247 41244467 -3663103 - L1MC4a LINE L1 -597 7211 6981 745 126 256 58 chr21 41244469 41244516 -3663054 - MER31A LTR ERV1 -2 483 447 1524 171 35 4 chr21 41244516 41244774 -3662796 + AluJo SINE Alu 33 298 -14 745 126 256 58 chr21 41244774 41244949 -3662621 - MER31A LTR ERV1 -38 447 217 1045 136 0 26 chr21 41245264 41245419 -3662151 - AluJo SINE Alu -161 151 1 2048 142 20 0 chr21 41245430 41245732 -3661838 - AluSx SINE Alu -4 308 1 245 334 136 30 chr21 41246079 41246411 -3661159 - L2 LINE L2 -9 3263 2897 229 294 18 136 chr21 41246509 41246588 -3660982 - L2 LINE L2 -575 2739 2652 2080 118 53 31 chr21 41246588 41246944 -3660626 - THE1B LTR MaLR 0 364 1 11411 86 10 5 chr21 41246948 41248026 -3659544 - THE1B-int LTR MaLR -4 1576 484 2187 114 0 0 chr21 41248026 41248330 -3659240 - AluSg SINE Alu 0 304 1 11411 86 10 5 chr21 41248330 41248817 -3658753 - THE1B-int LTR MaLR -1096 484 1 2205 101 48 34 chr21 41248818 41249173 -3658397 - THE1B LTR MaLR -1 363 4 1631 194 18 0 chr21 41249173 41249457 -3658113 + AluJo SINE Alu 17 305 -7 229 294 18 136 chr21 41249457 41249590 -3657980 - L2 LINE L2 -663 2651 2545 277 299 197 0 chr21 41249973 41250207 -3657363 + L2 LINE L2 1934 2213 -1101 2310 78 0 3 chr21 41250230 41250551 -3657019 + AluY SINE Alu 1 320 0 701 208 35 7 chr21 41250562 41250706 -3656864 - AluJo SINE Alu -162 150 3 240 243 250 28 chr21 41250747 41250891 -3656679 + L2 LINE L2 2211 2386 -928 2339 99 7 0 chr21 41251261 41251564 -3656006 - AluSg SINE Alu -5 305 1 417 310 116 33 chr21 41252011 41252340 -3655230 + L2 LINE L2 2915 3270 -2 2427 71 3 0 chr21 41252507 41252801 -3654769 + AluSp SINE Alu 1 295 -18 2285 104 0 13 chr21 41254649 41254977 -3652593 - AluSx SINE Alu 0 312 1 237 254 0 0 chr21 41254977 41255036 -3652534 - L1ME LINE L1 -516 5605 5547 2247 107 0 0 chr21 41256333 41256613 -3650957 + AluSq SINE Alu 1 280 -33 324 0 0 0 chr21 41256613 41256649 -3650921 + (CA)n Simple_repeat Simple_repeat 1 36 0 1143 282 21 3 chr21 41256714 41257047 -3650523 + L1MB8 LINE L1 3507 3845 -2301 2165 122 0 10 chr21 41257048 41257344 -3650226 + AluSx SINE Alu 2 294 -18 1985 241 44 21 chr21 41257353 41257587 -3649983 + L1MB8 LINE L1 5596 5823 -355 2007 123 13 19 chr21 41257587 41257717 -3649853 + AluSx SINE Alu 4 133 -179 2312 92 14 3 chr21 41257717 41258012 -3649558 + AluSp SINE Alu 1 298 -15 2007 123 13 19 chr21 41258012 41258190 -3649380 + AluSx SINE Alu 133 310 -2 1985 241 44 21 chr21 41258190 41258520 -3649050 + L1MB8 LINE L1 5823 6173 -5 400 217 36 1 chr21 41258989 41259084 -3648486 - FLAM_C SINE Alu -9 124 37 2127 91 3 51 chr21 41259121 41259450 -3648120 + AluSg SINE Alu 1 315 0 2596 57 0 7 chr21 41259618 41259919 -3647651 - AluY SINE Alu -11 300 2 330 158 2 0 chr21 41260757 41260821 -3646749 - MLT1F LTR MaLR -1 548 484 2379 97 0 22 chr21 41260829 41261140 -3646430 + AluSq SINE Alu 1 304 -9 204 298 32 32 chr21 41261254 41261348 -3646222 - MIR SINE MIR -114 148 55 1863 169 11 23 chr21 41262068 41262418 -3645152 - L1MB3 LINE L1 0 6183 5838 1076 180 50 48 chr21 41262421 41262562 -3645008 - L1MB3 LINE L1 -764 5478 5339 2459 77 0 0 chr21 41262562 41262872 -3644698 - AluY SINE Alu -1 310 1 1076 180 50 48 chr21 41262872 41263174 -3644396 - L1MB3 LINE L1 -903 5339 5035 446 130 22 54 chr21 41263174 41263266 -3644304 - FLAM_C SINE Alu -19 124 36 239 220 0 0 chr21 41263266 41263325 -3644245 - L1MB3 LINE L1 -1113 5033 4975 * 1120 268 13 4 chr21 41263318 41263668 -3643902 - L1MB3 LINE L1 -1396 4750 4400 1881 234 54 11 chr21 41263670 41264592 -3642978 - L1MB3 LINE L1 -2020 4126 3021 189 328 0 0 chr21 41264853 41264914 -3642656 - MIR SINE MIR -10 252 192 237 235 25 37 chr21 41265073 41265154 -3642416 - MARNA DNA Mariner -242 344 265 856 142 0 8 chr21 41266479 41266613 -3640957 + FLAM_C SINE Alu 1 133 0 320 221 42 21 chr21 41266949 41267022 -3640548 - L1ME4a LINE L1 -32 6089 6012 453 19 0 0 chr21 41267022 41267076 -3640494 + (CA)n Simple_repeat Simple_repeat 1 54 0 320 221 42 21 chr21 41267076 41267097 -3640473 - L1ME4a LINE L1 -109 6012 5993 287 84 11 16 chr21 41267258 41267316 -3640254 - Alu SINE Alu -34 267 228 2169 87 24 0 chr21 41267363 41267652 -3639918 + AluSg SINE Alu 1 296 -14 2070 129 7 0 chr21 41267662 41267971 -3639599 + AluSq SINE Alu 1 311 -2 399 295 0 0 chr21 41267978 41268100 -3639470 - HAL1 LINE L1 -844 1663 1542 2094 119 3 0 chr21 41268100 41268393 -3639177 - AluSx SINE Alu -18 294 1 1944 151 3 3 chr21 41268477 41268782 -3638788 - AluJb SINE Alu -5 307 3 1352 152 0 5 chr21 41269461 41269672 -3637898 + AluJo SINE Alu 85 294 -18 1997 92 49 0 chr21 41272181 41272465 -3635105 - AluY SINE Alu -13 298 1 745 105 9 0 chr21 41272479 41272584 -3634986 - AluSq/x SINE Alu -206 107 2 441 298 38 13 chr21 41272796 41272954 -3634616 + MIR SINE MIR 39 200 -62 838 164 0 22 chr21 41273603 41273737 -3633833 - FLAM_C SINE Alu -1 132 2 2187 104 0 0 chr21 41275028 41275325 -3632245 + AluSg SINE Alu 1 297 -13 1978 119 7 3 chr21 41276189 41276483 -3631087 + AluSc SINE Alu 1 295 -14 2331 79 0 13 chr21 41277967 41278282 -3629288 - AluY SINE Alu 0 311 1 417 39 0 0 chr21 41278812 41278863 -3628707 + (TG)n Simple_repeat Simple_repeat 1 51 0 2217 86 7 0 chr21 41280420 41280711 -3626859 - AluSp SINE Alu -20 293 1 940 169 12 6 chr21 41281023 41281189 -3626381 + FAM SINE Alu 1 167 -8 190 321 165 18 chr21 41282792 41282901 -3624669 + MIR3 SINE MIR 83 207 -1 2254 91 0 0 chr21 41283101 41283397 -3624173 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr21 41284016 41284045 -3623525 + AT_rich Low_complexity Low_complexity 1 29 0 1940 127 0 0 chr21 41284144 41284465 -3623105 + AluSx SINE Alu 1 321 0 2164 116 0 3 chr21 41284506 41284816 -3622754 + AluSg SINE Alu 1 309 -1 1274 241 196 12 chr21 41285775 41285999 -3621571 - MER7C DNA MER2_type -2426 602 421 1502 206 3 3 chr21 41285999 41286290 -3621280 + AluJb SINE Alu 1 291 -21 1274 241 196 12 chr21 41286290 41286559 -3621011 - MER7C DNA MER2_type -2607 421 18 496 283 117 0 chr21 41286763 41286993 -3620577 - L1MCc LINE L1 -5083 1340 1084 254 263 246 0 chr21 41287483 41287601 -3619969 - HAL1 LINE L1 -928 1579 1433 229 245 266 28 chr21 41287734 41287877 -3619693 + MLT1G1 LTR MaLR 161 337 -193 * 479 229 33 16 chr21 41287860 41287982 -3619588 + MLT1G1 LTR MaLR 439 562 -33 2115 97 7 7 chr21 41288530 41288818 -3618752 - AluSx SINE Alu -15 297 10 1772 163 3 0 chr21 41289319 41289607 -3617963 + AluJb SINE Alu 1 289 -23 225 247 65 13 chr21 41290387 41290464 -3617106 - MLT1L LTR MaLR -403 212 132 6795 179 37 45 chr21 41290861 41292181 -3615389 + MER52A LTR ERV1 446 1755 0 1863 99 25 62 chr21 41292451 41292773 -3614797 + AluSg SINE Alu 1 310 0 189 0 0 0 chr21 41294770 41294791 -3612779 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 251 170 0 0 chr21 41294900 41294947 -3612623 - MER91 DNA MER1_type 0 140 94 196 299 87 13 chr21 41295094 41295325 -3612245 + L2 LINE L2 2809 3056 -257 1125 217 80 13 chr21 41295330 41295358 -3612212 - L1MB3 LINE L1 -8 6175 6150 2365 51 0 3 chr21 41295358 41295653 -3611917 - AluY SINE Alu -17 294 1 1125 217 80 13 chr21 41295653 41296012 -3611558 - L1MB3 LINE L1 -33 6150 5742 421 264 124 8 chr21 41296029 41296150 -3611420 - MIR SINE MIR -113 149 15 794 70 10 0 chr21 41296199 41296299 -3611271 - AluS SINE Alu -211 102 2 1268 210 88 6 chr21 41296345 41296664 -3610906 + MLT1C LTR MaLR 1 345 -122 1491 144 110 0 chr21 41296688 41296952 -3610618 + AluJb SINE Alu 2 294 -18 964 192 28 14 chr21 41296952 41297166 -3610404 + LTR24 LTR ERV1 249 465 -2 556 213 57 0 chr21 41297166 41297286 -3610284 + MLT1C LTR MaLR 340 466 -1 556 260 55 0 chr21 41297330 41297476 -3610094 - MLT1D LTR MaLR -349 156 3 1836 180 3 0 chr21 41297624 41297935 -3609635 - AluJb SINE Alu 0 312 1 456 305 49 18 chr21 41297937 41298163 -3609407 - HAL1 LINE L1 -196 2311 2079 1350 133 109 89 chr21 41298177 41298470 -3609100 - AluJb SINE Alu -13 299 1 1206 159 120 0 chr21 41298592 41298825 -3608745 - AluJo SINE Alu -10 302 42 561 248 83 35 chr21 41299046 41299336 -3608234 - HAL1 LINE L1 -973 1534 1231 1346 237 129 16 chr21 41299393 41299882 -3607688 + L1MB5 LINE L1 4657 5200 -946 1198 161 0 10 chr21 41299882 41300087 -3607483 + AluSx SINE Alu 1 203 -109 555 68 0 14 chr21 41300087 41300160 -3607410 + AluSq/x SINE Alu 69 140 -172 2069 115 0 32 chr21 41300161 41300298 -3607272 + AluSx SINE Alu 6 146 -166 2162 115 0 0 chr21 41300298 41300602 -3606968 + AluSg SINE Alu 6 309 -1 2069 115 0 32 chr21 41300602 41300776 -3606794 + AluSx SINE Alu 146 307 -5 3362 189 100 33 chr21 41300777 41301153 -3606417 + L1MB5 LINE L1 5207 5556 -618 2287 90 7 0 chr21 41301153 41301453 -3606117 + AluSx SINE Alu 2 303 -9 3362 189 100 33 chr21 41301453 41302001 -3605569 + L1MB5 LINE L1 5556 6173 -1 2046 131 3 0 chr21 41302677 41302975 -3604595 - AluSx SINE Alu -13 299 1 1729 162 7 20 chr21 41303170 41303472 -3604098 + AluJo SINE Alu 1 298 -14 623 262 135 66 chr21 41303611 41303973 -3603597 + MLT2C1 LTR ERVL 1 387 -10 514 276 63 6 chr21 41304275 41304449 -3603121 - MER58B DNA MER1_type -17 324 141 2142 97 3 41 chr21 41309792 41310111 -3597459 - AluSp SINE Alu -6 307 1 231 319 67 30 chr21 41313560 41313695 -3593875 - L2 LINE L2 -167 3105 2966 227 296 57 0 chr21 41315801 41315889 -3591681 + MIR SINE MIR 79 171 -91 938 216 46 3 chr21 41316405 41316675 -3590895 + MER92B LTR ERV1 1 354 -200 231 36 0 0 chr21 41317265 41317293 -3590277 + (A)n Simple_repeat Simple_repeat 1 28 0 458 274 32 70 chr21 41317306 41317591 -3589979 + L1MD2 LINE L1 6086 6359 0 2013 94 18 0 chr21 41319224 41319501 -3588069 + AluSx SINE Alu 26 307 -5 294 256 32 88 chr21 41319594 41319719 -3587851 + L2 LINE L2 3196 3313 0 1549 155 99 3 chr21 41319910 41320194 -3587376 + AluJb SINE Alu 1 311 -1 287 239 0 15 chr21 41320280 41320347 -3587223 - L2 LINE L2 0 3313 3248 727 152 51 22 chr21 41320972 41321110 -3586460 + FLAM_C SINE Alu 2 143 0 1776 183 98 52 chr21 41321110 41321592 -3585978 + L1MB3 LINE L1 5678 6181 -2 264 159 135 127 chr21 41321858 41322011 -3585559 + L1MC2 LINE L1 6188 6338 -1417 2486 49 7 0 chr21 41322011 41322317 -3585253 + AluSc SINE Alu 1 308 -1 264 159 135 127 chr21 41322317 41322424 -3585146 + L1MC2 LINE L1 6338 6443 -1312 2143 72 24 10 chr21 41322424 41322716 -3584854 - AluSq SINE Alu -17 296 1 264 159 135 127 chr21 41322716 41322739 -3584831 + L1MC2 LINE L1 6443 7755 0 326 263 13 32 chr21 41324496 41324652 -3582918 + (CCCCG)n Simple_repeat Simple_repeat 2 154 0 28 29 0 0 chr21 41324917 41324952 -3582618 + GC_rich Low_complexity Low_complexity 1 35 0 569 112 20 20 chr21 41325564 41325662 -3581908 + AluSg/x SINE Alu 215 312 0 453 240 169 28 chr21 41325677 41325877 -3581693 + MLT1C LTR MaLR 163 408 -59 2054 110 13 3 chr21 41325877 41326177 -3581393 - AluSx SINE Alu -9 303 1 453 240 169 28 chr21 41326177 41326230 -3581340 + MLT1C LTR MaLR 408 452 -15 263 199 130 13 chr21 41326241 41326355 -3581215 - L1MC4 LINE L1 -5 8037 7882 315 0 0 0 chr21 41326417 41326452 -3581118 + (CA)n Simple_repeat Simple_repeat 1 35 0 576 163 0 0 chr21 41326502 41326600 -3580970 - AluSg/x SINE Alu 0 310 213 1882 94 0 19 chr21 41326602 41326867 -3580703 - AluSq SINE Alu -53 260 1 596 217 54 59 chr21 41326867 41326933 -3580637 - L1MC4 LINE L1 -803 7239 7174 2250 92 0 0 chr21 41326933 41327252 -3580318 + AluSc SINE Alu 9 327 0 596 217 54 59 chr21 41327252 41327386 -3580184 - L1MC4 LINE L1 -868 7174 7038 926 116 0 48 chr21 41327426 41327572 -3579998 + AluSq/x SINE Alu 1 139 -173 1746 112 21 103 chr21 41327573 41327913 -3579657 + AluYb8 SINE Alu 7 318 0 196 335 93 31 chr21 41328028 41328189 -3579381 - L2 LINE L2 -1803 1511 1341 253 232 18 0 chr21 41328200 41328256 -3579314 - L1ME3A LINE L1 -6 6164 6108 459 152 0 0 chr21 41328360 41328439 -3579131 + GA-rich Low_complexity Low_complexity 1 79 0 260 311 37 0 chr21 41328922 41329057 -3578513 - L2 LINE L2 -2286 1028 889 328 307 0 0 chr21 41329197 41329272 -3578298 - L1 LINE L1 -1656 4490 4416 2207 112 3 3 chr21 41329513 41329825 -3577745 - AluSx SINE Alu 0 312 1 1023 164 0 0 chr21 41329825 41329992 -3577578 - AluJb SINE Alu -8 304 135 275 294 50 25 chr21 41330053 41330172 -3577398 - MIR SINE MIR -31 231 110 411 135 27 27 chr21 41330267 41330341 -3577229 + MER116 DNA Mariner 3 76 -4 1715 70 0 0 chr21 41330341 41330556 -3577014 - AluSg/x SINE Alu -13 299 85 2296 74 0 7 chr21 41330556 41330853 -3576717 - AluY SINE Alu -16 295 1 2031 103 34 0 chr21 41330861 41331152 -3576418 - AluSx SINE Alu -7 305 5 291 195 53 115 chr21 41332442 41332522 -3575048 + L2 LINE L2 2435 2508 -806 1660 166 21 7 chr21 41332522 41332812 -3574758 - AluJb SINE Alu -18 294 1 291 195 53 115 chr21 41332812 41332844 -3574726 + L2 LINE L2 2508 2540 -774 248 314 116 41 chr21 41332846 41333049 -3574521 + L1ME LINE L1 4778 5003 -1143 1703 171 7 3 chr21 41333049 41333348 -3574222 + AluJo SINE Alu 12 311 -1 248 314 116 41 chr21 41333348 41333386 -3574184 + L1ME LINE L1 5003 5037 -1109 1700 147 0 55 chr21 41333394 41333701 -3573869 + AluJb SINE Alu 1 290 -22 906 120 0 4 chr21 41333709 41333917 -3573653 + AluSx SINE Alu 2 295 -17 219 69 0 0 chr21 41333917 41333946 -3573624 + (CA)n Simple_repeat Simple_repeat 2 30 0 2131 113 0 0 chr21 41333949 41334262 -3573308 + AluSq SINE Alu 1 313 0 1988 130 23 0 chr21 41334270 41334570 -3573000 + AluSx SINE Alu 1 307 -5 561 250 54 37 chr21 41334591 41334870 -3572700 + L1ME LINE L1 5028 5321 -841 2297 91 0 7 chr21 41334870 41335178 -3572392 - AluSq SINE Alu -7 306 1 561 250 54 37 chr21 41335178 41335330 -3572240 + L1ME LINE L1 5321 5469 -693 366 319 80 35 chr21 41335349 41335553 -3572017 + L2 LINE L2 2559 2781 -533 806 180 0 0 chr21 41335553 41335681 -3571889 + FLAM_C SINE Alu 2 129 -4 366 319 80 35 chr21 41335681 41335764 -3571806 + L2 LINE L2 2781 2859 -455 259 344 84 8 chr21 41335941 41336072 -3571498 + MLT1I LTR MaLR 196 336 -73 1785 160 54 0 chr21 41336705 41336999 -3570571 + AluSx SINE Alu 1 310 -2 241 306 56 19 chr21 41337029 41337137 -3570433 - L1 LINE L1 -2319 3827 3716 2257 83 0 17 chr21 41337395 41337696 -3569874 - AluSc SINE Alu -13 296 1 1984 113 7 3 chr21 41339008 41339300 -3568270 + AluSx SINE Alu 1 293 -19 1484 152 19 19 chr21 41339834 41340091 -3567479 - AluJb SINE Alu -20 292 36 550 128 0 0 chr21 41340510 41340588 -3566982 - AluJ/FRAM SINE Alu -19 293 216 216 163 0 0 chr21 41341708 41341751 -3565819 + (CCA)n Simple_repeat Simple_repeat 3 45 0 659 134 113 7 chr21 41342519 41342661 -3564909 - MER30 DNA MER1_type -55 175 19 1884 97 3 62 chr21 41344611 41344919 -3562651 - AluSx SINE Alu -20 292 3 2352 77 0 0 chr21 41345225 41345525 -3562045 - AluSg1 SINE Alu -8 301 2 2093 102 14 7 chr21 41345675 41345969 -3561601 - AluSx SINE Alu -16 296 1 452 85 9 4 chr21 41346163 41346376 -3561194 - AluSc SINE Alu -2 307 1 2341 71 3 0 chr21 41348476 41348773 -3558797 - AluSg SINE Alu -12 298 1 261 209 174 0 chr21 41353355 41353441 -3554129 + MIR SINE MIR 50 150 -112 236 50 25 50 chr21 41355271 41355311 -3552259 + Tigger5 DNA MER2_type 2253 2291 -32 371 183 0 0 chr21 41355322 41355382 -3552188 + Tigger5 DNA MER2_type 2264 2323 0 29 47 0 0 chr21 41355875 41355918 -3551652 + GC_rich Low_complexity Low_complexity 1 43 0 213 196 0 0 chr21 41356053 41356109 -3551461 + (CCG)n Simple_repeat Simple_repeat 2 57 0 2047 167 68 14 chr21 41356514 41356928 -3550642 - LTR23 LTR ERV1 -1 436 1 2660 116 88 14 chr21 41357461 41357892 -3549678 - MER4C LTR ERV1 -2 463 1 1949 176 39 25 chr21 41358194 41358625 -3548945 + LTR23 LTR ERV1 1 437 0 721 237 58 57 chr21 41358625 41359065 -3548505 + LTR23-int LTR ERV1 1 629 -4494 2223 100 0 3 chr21 41359065 41359374 -3548196 - AluSg1 SINE Alu -1 308 1 721 237 58 57 chr21 41359374 41359463 -3548107 + LTR23-int LTR ERV1 629 716 -4407 897 143 109 0 chr21 41359755 41359902 -3547668 - AluSg/x SINE Alu -9 301 139 2420 89 3 3 chr21 41359908 41360210 -3547360 - AluSq SINE Alu -11 302 1 2401 97 0 3 chr21 41360246 41360556 -3547014 + AluSg1 SINE Alu 1 309 0 2160 117 0 16 chr21 41360744 41361061 -3546509 + AluSq SINE Alu 1 312 -1 1984 115 54 0 chr21 41361103 41361381 -3546189 + AluSx SINE Alu 13 305 -7 486 205 14 31 chr21 41361595 41361608 -3545962 + LTR23-int LTR ERV1 1370 1382 -4564 2415 83 0 3 chr21 41361608 41361909 -3545661 - AluSx SINE Alu -12 300 1 2290 112 0 0 chr21 41361909 41362203 -3545367 - AluSq SINE Alu -5 308 15 486 205 14 31 chr21 41362203 41362333 -3545237 + LTR23-int LTR ERV1 1380 1864 -4082 1237 118 0 0 chr21 41362338 41362499 -3545071 - AluSg/x SINE Alu -21 291 131 2291 114 3 0 chr21 41362546 41362845 -3544725 - AluSq SINE Alu -13 300 1 497 181 12 5 chr21 41362944 41363056 -3544514 + LTR23-int LTR ERV1 841 2726 -3220 1092 186 22 22 chr21 41363057 41363288 -3544282 + MLT2A1 LTR ERVL 1 231 -213 1560 195 49 92 chr21 41363289 41363755 -3543815 - LTR8 LTR ERV1 0 691 246 1264 171 8 49 chr21 41364400 41364663 -3542907 - LTR8 LTR ERV1 -439 252 1 1225 232 25 42 chr21 41364663 41365006 -3542564 + MLT2B3 LTR ERVL 218 554 0 331 70 0 0 chr21 41365027 41365070 -3542500 + LTR23-int LTR ERV1 948 990 -4133 563 259 45 50 chr21 41365072 41365256 -3542314 + MER34C LTR ERV1 160 344 -241 7629 62 15 1 chr21 41365256 41366249 -3541321 - LTR13 LTR ERVK 0 1007 1 563 259 45 50 chr21 41366249 41366284 -3541286 + MER34C LTR ERV1 344 378 -207 346 216 43 108 chr21 41366290 41366429 -3541141 + LTR23-int LTR ERV1 1203 1332 -3791 459 175 88 0 chr21 41366429 41366543 -3541027 + LTR23-int LTR ERV1 5469 5592 -739 * 591 111 30 9 chr21 41366531 41366657 -3540913 + LTR23-int LTR ERV1 1096 2745 -3762 2329 85 0 10 chr21 41366657 41366950 -3540620 + AluY SINE Alu 1 290 -21 573 128 11 0 chr21 41366950 41367044 -3540526 + LTR23-int LTR ERV1 4087 4181 -3939 330 199 81 85 chr21 41367047 41367165 -3540405 + AluSg SINE Alu 1 135 -165 928 164 58 39 chr21 41367165 41367316 -3540254 + LTR23-int LTR ERV1 2669 2746 -2377 2240 134 0 0 chr21 41367316 41367615 -3539955 + AluSx SINE Alu 1 299 -13 928 164 58 39 chr21 41367615 41367752 -3539818 + LTR23-int LTR ERV1 2746 2879 -2244 14581 34 3 16 chr21 41367754 41370391 -3537179 - L1PA5 LINE L1 -1 6153 3536 1333 93 0 0 chr21 41370392 41370554 -3537016 - AluSq SINE Alu -151 162 1 2268 114 22 116 chr21 41370554 41370978 -3536592 - LTR49-int LTR ERV1 -1786 4545 4083 1670 195 17 10 chr21 41370978 41371275 -3536295 + AluJb SINE Alu 1 299 -13 2268 114 22 116 chr21 41371275 41371332 -3536238 - LTR49-int LTR ERV1 -2248 4083 4117 2221 142 0 0 chr21 41371332 41371641 -3535929 + AluSx SINE Alu 1 309 -3 2268 114 22 116 chr21 41371641 41371703 -3535867 - LTR49-int LTR ERV1 -2213 4118 4052 3938 63 0 0 chr21 41371703 41372210 -3535360 + L1P LINE L1 629 1135 -5011 3865 56 0 0 chr21 41372206 41372741 -3534829 + L1P LINE L1 3007 3541 -2605 * 1129 118 0 0 chr21 41372741 41372894 -3534676 + AluSg/x SINE Alu 156 308 -2 5927 167 44 24 chr21 41372902 41373197 -3534373 + LTR23-int LTR ERV1 4411 4699 -424 2252 78 60 0 chr21 41373197 41373481 -3534089 - AluSq SINE Alu -12 301 1 5927 167 44 24 chr21 41373481 41374457 -3533113 + LTR23-int LTR ERV1 4699 5654 531 2462 86 0 3 chr21 41374457 41374758 -3532812 - AluSq SINE Alu -13 300 1 5927 167 44 24 chr21 41374758 41374950 -3532620 + LTR23-int LTR ERV1 5654 5841 718 2386 127 13 77 chr21 41374950 41375359 -3532211 + MSTA LTR MaLR 1 434 6 294 29 0 0 chr21 41375359 41375394 -3532176 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1699 183 0 14 chr21 41375401 41375686 -3531884 - AluJb SINE Alu -31 281 1 2386 127 13 77 chr21 41375686 41375725 -3531845 + MSTA LTR MaLR 388 428 0 5927 167 44 24 chr21 41375725 41375871 -3531699 + LTR23-int LTR ERV1 5840 5123 0 510 101 0 0 chr21 41375878 41375957 -3531613 + LTR23 LTR ERV1 10 88 -349 1282 177 0 14 chr21 41375977 41376192 -3531378 + AluJb SINE Alu 93 304 -8 580 121 3 7 chr21 41376195 41376324 -3531246 + LTR24 LTR ERV1 336 465 -2 791 224 0 4 chr21 41376326 41376578 -3530992 + (TCCA)n Simple_repeat Simple_repeat 1 250 0 197 288 14 27 chr21 41376649 41376722 -3530848 + L2 LINE L2 2304 2375 -939 280 188 62 98 chr21 41377497 41377609 -3529961 + MER46C DNA MER2_type 1 108 -230 876 172 0 0 chr21 41377863 41377997 -3529573 + FLAM_C SINE Alu 1 134 -9 508 319 136 41 chr21 41377999 41378337 -3529233 + Tigger4(Zombi) DNA MER2_type 603 908 -1823 1995 147 3 3 chr21 41378337 41378637 -3528933 + AluJb SINE Alu 3 302 -10 508 319 136 41 chr21 41378637 41379026 -3528544 + Tigger4(Zombi) DNA MER2_type 908 1399 -1332 1793 118 3 66 chr21 41379204 41379577 -3527993 - MER4A LTR ERV1 0 664 257 526 146 21 10 chr21 41379574 41379670 -3527900 - MER4A LTR ERV1 -567 97 1 * 2367 110 45 38 chr21 41380243 41380502 -3527068 - LTR24B LTR ERV1 -7 569 304 2427 109 0 0 chr21 41380502 41380814 -3526756 + AluSx SINE Alu 1 312 0 2367 110 45 38 chr21 41380814 41380954 -3526616 - LTR24B LTR ERV1 -272 304 167 429 171 0 114 chr21 41380954 41380995 -3526575 + AluJo/FLAM SINE Alu 37 81 -231 2266 106 3 0 chr21 41380995 41381288 -3526282 - AluSx SINE Alu -18 294 1 429 171 0 114 chr21 41381288 41381351 -3526219 + AluJo/FLAM SINE Alu 81 129 -183 1079 106 0 6 chr21 41381407 41381567 -3526003 - LTR24B LTR ERV1 -415 161 3 343 266 83 9 chr21 41381752 41381861 -3525709 + MER46C DNA MER2_type 135 251 -87 2960 13 0 0 chr21 41381899 41382215 -3525355 - AluYb8 SINE Alu -2 316 1 226 224 45 15 chr21 41382227 41382294 -3525276 + MLT1H LTR MaLR 10 78 -471 655 204 0 36 chr21 41382294 41382351 -3525219 + FLAM_A SINE Alu 1 59 -252 4524 105 8 1 chr21 41382351 41383007 -3524563 + PABL_A LTR ERV1 1 660 0 655 204 0 36 chr21 41383007 41383086 -3524484 + FLAM_A SINE Alu 59 132 -179 522 254 94 28 chr21 41383103 41383316 -3524254 + MLT1H LTR MaLR 55 281 -268 2284 128 0 0 chr21 41383898 41384196 -3523374 + AluSx SINE Alu 1 298 -14 453 318 37 5 chr21 41384441 41384630 -3522940 - L2 LINE L2 -1 3312 3118 326 276 29 19 chr21 41384941 41385046 -3522524 + MIR3 SINE MIR 100 205 -3 2440 103 3 0 chr21 41385182 41385492 -3522078 - AluSx SINE Alu -1 311 1 1293 205 92 30 chr21 41385684 41386021 -3521549 - MLT1A2 LTR MaLR -16 358 1 2389 152 24 91 chr21 41386507 41386800 -3520770 - L1MB3 LINE L1 -1 6182 5871 1587 113 9 35 chr21 41386800 41387030 -3520540 - AluSg/x SINE Alu -14 298 75 243 32 0 0 chr21 41387030 41387061 -3520509 - AluY SINE Alu -271 31 1 2389 152 24 91 chr21 41387061 41387275 -3520295 - L1MB3 LINE L1 -310 5873 5680 438 277 44 13 chr21 41387336 41387495 -3520075 - L1MC/D LINE L1 -2057 5751 5588 3405 168 48 52 chr21 41388000 41388123 -3519447 - MER6 DNA MER2_type 0 865 743 2235 91 35 0 chr21 41388123 41388408 -3519162 + AluSp SINE Alu 1 295 -18 3405 168 48 52 chr21 41388408 41388442 -3519128 - MER6 DNA MER2_type -122 743 710 1810 175 3 23 chr21 41388442 41388751 -3518819 + AluJb SINE Alu 4 306 -6 3405 168 48 52 chr21 41388751 41389350 -3518220 - MER6 DNA MER2_type -155 710 111 256 161 48 16 chr21 41389459 41389521 -3518049 - MLT1J LTR MaLR -322 189 126 198 239 0 0 chr21 41390214 41390285 -3517285 + C-rich Low_complexity Low_complexity 1 71 0 281 262 104 12 chr21 41390690 41390854 -3516716 - MIR3 SINE MIR -24 184 6 221 0 35 0 chr21 41390887 41390916 -3516654 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 1870 130 69 33 chr21 41390924 41391247 -3516323 + THE1C LTR MaLR 1 340 -35 2418 84 0 0 chr21 41391247 41391546 -3516024 - AluSx SINE Alu -13 299 1 1870 130 69 33 chr21 41391546 41391584 -3515986 + THE1C LTR MaLR 340 375 0 1515 242 52 7 chr21 41391588 41392030 -3515540 - MLT1C LTR MaLR 0 467 6 238 167 0 0 chr21 41392448 41392494 -3515076 - MIR SINE MIR -62 146 105 744 243 0 32 chr21 41393181 41393230 -3514340 - AluJb SINE Alu -8 304 255 1659 116 118 40 chr21 41393230 41393267 -3514303 + THE1A LTR MaLR 1 34 -321 2383 95 0 10 chr21 41393267 41393572 -3513998 - AluSq SINE Alu -11 302 1 1659 116 118 40 chr21 41393572 41393863 -3513707 + THE1A LTR MaLR 34 355 0 744 243 0 32 chr21 41393863 41394002 -3513568 - AluJb SINE Alu -57 255 122 2431 87 0 3 chr21 41394637 41394936 -3512634 - AluSx SINE Alu -14 298 1 1562 209 48 3 chr21 41395195 41395587 -3511983 + L1MB3 LINE L1 5774 6183 0 8456 51 9 0 chr21 41395681 41396641 -3510929 - LTR5 LTR ERVK 0 969 1 2001 133 36 7 chr21 41397127 41397428 -3510142 + AluJo SINE Alu 1 310 -2 1368 233 72 30 chr21 41397534 41397967 -3509603 - MLT1D LTR MaLR -54 451 1 1983 155 0 14 chr21 41398279 41398415 -3509155 + AluSx SINE Alu 1 137 -175 2173 120 0 0 chr21 41398415 41398718 -3508852 + AluSx SINE Alu 1 303 0 1983 155 0 14 chr21 41398718 41398877 -3508693 + AluSx SINE Alu 137 293 -19 643 126 10 0 chr21 41398877 41398980 -3508590 - L1MB3 LINE L1 -11 6172 6069 1390 236 43 25 chr21 41398981 41399349 -3508221 + MLT2C1 LTR ERVL 2 376 -21 336 219 149 26 chr21 41399364 41399478 -3508092 + L2 LINE L2 3166 3293 -20 372 43 0 0 chr21 41399844 41399890 -3507680 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 504 267 12 41 chr21 41399921 41400093 -3507477 - L2 LINE L2 -58 3255 3089 381 280 78 48 chr21 41400133 41400447 -3507123 - MLT1I LTR MaLR -21 388 95 1319 199 105 43 chr21 41400484 41400856 -3506714 + MSTD LTR MaLR 2 396 0 951 301 115 8 chr21 41400871 41401354 -3506216 - L2 LINE L2 -297 3016 2485 1499 186 40 25 chr21 41401354 41401681 -3505889 - MLT1B LTR MaLR 0 390 59 665 172 0 16 chr21 41401683 41401811 -3505759 + FLAM_A SINE Alu 4 129 -13 2343 103 0 3 chr21 41401822 41402133 -3505437 - AluSx SINE Alu -2 310 1 441 274 91 21 chr21 41402922 41403163 -3504407 - MER90 LTR ERV1 -316 259 2 885 152 0 14 chr21 41403257 41403402 -3504168 + FLAM_C SINE Alu 1 143 0 1767 205 31 12 chr21 41403584 41404000 -3503570 + MLT2C2 LTR ERVL 1 359 -38 243 315 39 0 chr21 41404269 41404396 -3503174 + LTR16C LTR ERVL 297 428 -63 531 301 166 10 chr21 41405488 41405641 -3501929 + L1 LINE L1 2964 3092 -3054 1717 104 0 0 chr21 41405641 41405862 -3501708 + AluSg/x SINE Alu 78 298 -14 531 301 166 10 chr21 41405862 41406004 -3501566 + L1 LINE L1 3092 3305 -2841 418 266 101 92 chr21 41406112 41406297 -3501273 + L1 LINE L1 3446 3637 -2509 1841 177 0 3 chr21 41406297 41406602 -3500968 - AluJb SINE Alu -8 304 1 418 266 101 92 chr21 41406602 41406732 -3500838 + L1 LINE L1 3637 3764 -2382 411 334 52 37 chr21 41407223 41407624 -3499946 + L1MC5 LINE L1 7523 7929 -32 279 127 75 15 chr21 41408362 41408496 -3499074 + (CA)n Simple_repeat Simple_repeat 2 143 0 514 72 44 50 chr21 41408537 41408717 -3498853 + (CA)n Simple_repeat Simple_repeat 2 180 0 463 77 65 35 chr21 41408779 41408949 -3498621 + (CA)n Simple_repeat Simple_repeat 1 175 0 357 96 70 26 chr21 41408970 41409126 -3498444 + (CA)n Simple_repeat Simple_repeat 1 163 0 285 132 66 22 chr21 41409139 41409230 -3498340 + (CA)n Simple_repeat Simple_repeat 1 95 0 1190 234 110 17 chr21 41410867 41411285 -3496285 - MER97a DNA MER1_type? 0 894 438 386 256 80 0 chr21 41411323 41411460 -3496110 - MER97c DNA MER1_type? -700 390 243 1462 161 49 74 chr21 41411523 41411716 -3495854 - MLT1B LTR MaLR -33 357 176 2166 104 7 3 chr21 41411716 41412023 -3495547 - AluSg SINE Alu -2 308 1 1462 161 49 74 chr21 41412023 41412195 -3495375 - MLT1B LTR MaLR -214 176 1 929 86 0 43 chr21 41412219 41412358 -3495212 + FLAM_C SINE Alu 1 133 -10 1075 236 26 0 chr21 41412358 41412625 -3494945 - MER82 DNA MER2_type -54 599 326 556 236 35 0 chr21 41412638 41412812 -3494758 + L1M4 LINE L1 2146 2325 -3821 333 194 0 0 chr21 41412832 41412899 -3494671 + MER82 DNA MER2_type 335 401 -252 1047 222 13 69 chr21 41412902 41413027 -3494543 - MER82 DNA MER2_type -342 311 181 2274 112 0 0 chr21 41413027 41413332 -3494238 - AluSx SINE Alu -7 305 1 1047 222 13 69 chr21 41413332 41413512 -3494058 - MER82 DNA MER2_type -472 181 23 316 271 125 0 chr21 41413535 41413679 -3493891 - MER97a DNA MER1_type? -674 220 59 302 224 0 15 chr21 41413856 41413923 -3493647 + L2 LINE L2 3162 3227 -86 1115 178 46 0 chr21 41414129 41414370 -3493200 + MLT1D LTR MaLR 254 505 0 523 261 59 0 chr21 41414855 41414895 -3492675 + MER96B DNA MER1_type? 86 122 -295 2223 109 0 7 chr21 41414895 41415226 -3492344 + AluSx SINE Alu 1 312 0 523 261 59 0 chr21 41415226 41415338 -3492232 + MER96B DNA MER1_type? 122 247 -170 398 328 30 0 chr21 41415505 41415636 -3491934 + MIR SINE MIR 49 183 -79 1887 137 10 29 chr21 41416256 41416386 -3491184 + AluSx SINE Alu 1 132 -180 270 0 0 0 chr21 41416386 41416416 -3491154 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1887 137 10 29 chr21 41416416 41416591 -3490979 + AluSx SINE Alu 132 300 -12 274 270 55 31 chr21 41418667 41418830 -3488740 + (CCAA)n Simple_repeat Simple_repeat 4 170 0 235 377 109 0 chr21 41419622 41419760 -3487810 - MIR SINE MIR -43 219 67 326 49 85 0 chr21 41422261 41422343 -3485227 + (CA)n Simple_repeat Simple_repeat 1 89 0 1203 233 63 0 chr21 41422786 41423121 -3484449 + MLT1B LTR MaLR 1 356 -34 195 276 171 19 chr21 41423765 41423870 -3483700 - MIR SINE MIR -113 149 29 263 342 64 18 chr21 41424480 41424645 -3482925 + MER5A DNA MER1_type 1 182 -7 344 342 98 13 chr21 41424873 41425098 -3482472 - MIR SINE MIR -10 252 9 214 327 9 55 chr21 41425132 41425242 -3482328 + MIR SINE MIR 32 136 -72 236 281 35 10 chr21 41426334 41426651 -3480919 + (CA)n Simple_repeat Simple_repeat 1 325 0 732 216 70 108 chr21 41427641 41428040 -3479530 - MLT1B LTR MaLR -6 384 1 441 298 0 17 chr21 41428179 41428360 -3479210 + (TG)n Simple_repeat Simple_repeat 2 179 0 323 244 6 0 chr21 41428403 41428571 -3478999 + (TG)n Simple_repeat Simple_repeat 2 170 0 287 220 8 0 chr21 41428662 41428794 -3478776 + (TG)n Simple_repeat Simple_repeat 2 134 0 301 226 11 0 chr21 41428837 41429014 -3478556 + (TG)n Simple_repeat Simple_repeat 2 180 0 470 202 6 0 chr21 41429029 41429197 -3478373 + (TG)n Simple_repeat Simple_repeat 2 170 0 239 181 14 0 chr21 41429210 41429282 -3478288 + (TG)n Simple_repeat Simple_repeat 2 74 0 2097 136 0 3 chr21 41432079 41432389 -3475181 - AluSx SINE Alu -3 309 1 377 294 133 57 chr21 41432731 41433136 -3474434 + L1ME LINE L1 179 614 -5591 343 245 77 0 chr21 41433281 41433424 -3474146 + L1ME LINE L1 1540 1693 -4703 1027 181 48 0 chr21 41433720 41433908 -3473662 - AluSg/x SINE Alu -2 308 112 230 273 234 39 chr21 41436054 41436182 -3471388 + MIR3 SINE MIR 26 178 -30 218 233 14 41 chr21 41436219 41436292 -3471278 + (CATA)n Simple_repeat Simple_repeat 1 71 0 261 226 10 20 chr21 41436294 41436396 -3471174 + (CA)n Simple_repeat Simple_repeat 2 102 0 180 222 11 33 chr21 41436412 41436502 -3471068 + (CATA)n Simple_repeat Simple_repeat 4 91 0 376 277 147 58 chr21 41436619 41436843 -3470727 - MER112 DNA MER1_type -11 249 6 2074 103 0 4 chr21 41436979 41437260 -3470310 - AluSx SINE Alu -17 295 16 373 267 127 40 chr21 41437879 41437960 -3469610 - L1ME3A LINE L1 -1 6169 6096 2054 125 10 14 chr21 41437960 41438256 -3469314 + AluJb SINE Alu 2 296 -16 373 267 127 40 chr21 41438256 41438324 -3469246 - L1ME3A LINE L1 -74 6096 6007 213 94 0 0 chr21 41438336 41438368 -3469202 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 447 264 8 54 chr21 41438369 41438498 -3469072 - L2 LINE L2 -11 3302 3180 581 329 128 14 chr21 41438572 41438931 -3468639 - L1ME3A LINE L1 -208 5962 5563 487 200 127 53 chr21 41438966 41439010 -3468560 - L1ME3A LINE L1 -736 5428 5389 767 204 0 0 chr21 41439010 41439142 -3468428 - FLAM_C SINE Alu -1 132 1 487 200 127 53 chr21 41439142 41439247 -3468323 - L1ME3A LINE L1 -775 5389 5268 592 103 0 48 chr21 41441659 41441824 -3465746 + (CA)n Simple_repeat Simple_repeat 1 157 0 741 100 8 48 chr21 41441835 41442090 -3465480 + (CA)n Simple_repeat Simple_repeat 1 244 0 259 250 22 11 chr21 41444283 41444375 -3463195 - MER92B LTR ERV1 0 636 544 1974 161 0 0 chr21 41444864 41445175 -3462395 - AluSx SINE Alu -1 311 1 2544 311 52 30 chr21 41445706 41446292 -3461278 + L1MEc LINE L1 5 576 -5820 2223 94 0 3 chr21 41446292 41446591 -3460979 + AluSp SINE Alu 14 311 -2 2544 311 52 30 chr21 41446591 41447703 -3459867 + L1MEc LINE L1 576 1741 -4655 2003 236 61 13 chr21 41447693 41448460 -3459110 + L1MEc LINE L1 2120 2882 -3333 * 371 315 23 43 chr21 41448629 41448931 -3458639 - L1MC5 LINE L1 -34 7927 7632 1301 160 131 63 chr21 41448938 41449080 -3458490 - MER31B LTR ERV1 -59 407 276 2066 137 33 51 chr21 41449080 41449365 -3458205 - MLT1B LTR MaLR -2 388 110 1458 174 75 17 chr21 41449365 41449659 -3457911 - AluJo SINE Alu -1 311 1 2066 137 33 51 chr21 41449659 41449768 -3457802 - MLT1B LTR MaLR -280 110 1 1301 160 131 63 chr21 41449768 41450006 -3457564 - MER31B LTR ERV1 -190 276 1 237 198 28 66 chr21 41450020 41450126 -3457444 - HAL1 LINE L1 -2152 355 254 1114 275 92 83 chr21 41450158 41450795 -3456775 - L1MEd LINE L1 -4687 1697 1041 1699 162 0 58 chr21 41450795 41450986 -3456584 - AluJo SINE Alu -3 309 143 2416 72 0 0 chr21 41450986 41451292 -3456278 - AluY SINE Alu -5 306 1 1699 162 0 58 chr21 41451292 41451428 -3456142 - AluJo SINE Alu -169 143 1 1114 275 92 83 chr21 41451428 41451623 -3455947 - L1MEd LINE L1 -5343 1041 849 1833 155 53 66 chr21 41454252 41454293 -3453277 - THE1C LTR MaLR 0 375 335 2129 90 4 0 chr21 41454293 41454602 -3452968 + AluY SINE Alu 1 310 0 1833 155 53 66 chr21 41454602 41454939 -3452631 - THE1C LTR MaLR -40 335 1 2184 123 0 3 chr21 41455816 41456125 -3451445 - AluSc SINE Alu -1 308 1 213 39 0 0 chr21 41479571 41479597 -3427973 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 183 272 53 88 chr21 41481091 41481205 -3426365 + L3 LINE CR1 1368 1477 -100 503 275 76 6 chr21 41481643 41481814 -3425756 - MER5A DNA MER1_type 0 189 7 492 348 40 7 chr21 41482151 41482424 -3425146 - L2 LINE L2 -751 2563 2282 1677 121 0 0 chr21 41482525 41482756 -3424814 + AluSx SINE Alu 1 231 -81 1247 246 39 20 chr21 41483460 41483817 -3423753 - MLT1A1 LTR MaLR 0 365 2 318 331 38 8 chr21 41488978 41489111 -3418459 - MIR SINE MIR -15 247 111 * 462 247 133 0 chr21 41489104 41489254 -3418316 - MIR SINE MIR -72 190 21 1159 224 91 35 chr21 41489608 41489947 -3417623 - MLT1A1 LTR MaLR -7 358 1 346 282 73 42 chr21 41490049 41490308 -3417262 - L2 LINE L2 -228 3085 2819 855 45 0 91 chr21 41490308 41491100 -3416470 + (GGGGA)n Simple_repeat Simple_repeat 1 719 0 814 56 0 64 chr21 41491134 41491378 -3416192 + (GGGGA)n Simple_repeat Simple_repeat 1 228 0 356 338 20 0 chr21 41491481 41491629 -3415941 + L1ME1 LINE L1 6015 6165 -1 200 275 108 75 chr21 41493144 41493264 -3414306 - MIR3 SINE MIR -43 165 42 241 300 0 89 chr21 41493716 41493806 -3413764 + L2 LINE L2 3175 3256 -16 983 104 23 0 chr21 41493944 41494117 -3413453 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 811 131 23 17 chr21 41494140 41494315 -3413255 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 1108 189 14 1 chr21 41494315 41494575 -3412995 + L1MB7 LINE L1 5621 5882 -289 803 156 19 0 chr21 41494575 41494796 -3412774 + (TCCA)n Simple_repeat Simple_repeat 1 225 0 429 156 0 0 chr21 41494812 41494889 -3412681 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 1512 209 46 0 chr21 41494889 41495265 -3412305 - L1MB5 LINE L1 -205 5969 5623 1375 179 15 0 chr21 41495794 41496067 -3411503 + MLT1B LTR MaLR 3 279 -111 537 143 9 0 chr21 41496067 41496172 -3411398 + MLT1B LTR MaLR 174 279 -111 545 143 9 0 chr21 41496172 41496277 -3411293 + MLT1B LTR MaLR 174 279 -111 540 143 9 0 chr21 41496277 41496382 -3411188 + MLT1B LTR MaLR 174 279 -111 504 162 9 0 chr21 41496382 41496487 -3411083 + MLT1B LTR MaLR 174 279 -111 533 152 9 0 chr21 41496487 41496592 -3410978 + MLT1B LTR MaLR 174 279 -111 1053 174 9 18 chr21 41496592 41496811 -3410759 + MLT1B LTR MaLR 174 390 0 882 165 0 0 chr21 41497099 41497232 -3410338 - FLAM_C SINE Alu 0 133 1 379 230 20 0 chr21 41497242 41497342 -3410228 - L1MD3 LINE L1 -12 7983 7882 385 333 21 0 chr21 41497344 41497488 -3410082 - L1ME4a LINE L1 -1 6120 5974 320 259 33 12 chr21 41497490 41497651 -3409919 - L1MD3 LINE L1 0 7981 6194 * 1589 227 91 50 chr21 41497650 41498244 -3409326 - L1MD2 LINE L1 -216 6143 5526 315 320 136 7 chr21 41498247 41498394 -3409176 - L1ME4a LINE L1 -154 5967 5802 509 303 135 4 chr21 41499811 41500124 -3407446 + MLT1G1 LTR MaLR 20 330 -212 194 397 59 15 chr21 41501308 41501444 -3406126 - MIR SINE MIR -63 199 58 336 229 6 38 chr21 41503363 41503546 -3404024 + CT-rich Low_complexity Low_complexity 4 180 0 1061 241 95 3 chr21 41503577 41503893 -3403677 - L1MC1 LINE L1 0 6333 5989 189 0 0 0 chr21 41503999 41504020 -3403550 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1894 127 21 7 chr21 41504024 41504308 -3403262 - AluSg SINE Alu -22 288 1 255 31 0 0 chr21 41504487 41504519 -3403051 + (TG)n Simple_repeat Simple_repeat 2 33 0 1242 318 66 19 chr21 41504528 41505747 -3401823 - L1ME3A LINE L1 -220 5950 4673 232 281 0 24 chr21 41505748 41505830 -3401740 - L1ME2 LINE L1 -1 6163 6084 1595 246 60 37 chr21 41505852 41506416 -3401154 - MLT1G1 LTR MaLR -16 579 3 914 319 79 30 chr21 41506433 41506928 -3400642 - L1ME3 LINE L1 -99 6063 5545 457 291 30 15 chr21 41506962 41507165 -3400405 - L1ME3 LINE L1 -719 5459 5254 646 289 60 93 chr21 41507180 41507792 -3399778 - MER21B LTR ERV1 -170 693 102 188 238 0 10 chr21 41508999 41509100 -3398470 + (CA)n Simple_repeat Simple_repeat 2 101 0 348 260 40 28 chr21 41509178 41509355 -3398215 + (CACG)n Simple_repeat Simple_repeat 1 179 0 223 388 0 0 chr21 41509464 41509629 -3397941 + (CA)n Simple_repeat Simple_repeat 1 165 0 252 322 41 35 chr21 41510657 41510828 -3396742 - MLT1J LTR MaLR -66 445 274 1766 126 40 18 chr21 41510910 41511210 -3396360 - AluSx SINE Alu 0 306 1 1614 205 78 14 chr21 41514025 41514450 -3393120 - MER66A LTR ERV1 0 478 27 1514 226 69 0 chr21 41514538 41514900 -3392670 + MLT1B LTR MaLR 4 390 0 685 228 72 42 chr21 41515963 41516200 -3391370 - MLT1C LTR MaLR -208 259 16 286 200 27 13 chr21 41519259 41519279 -3388291 - L1MB2 LINE L1 -272 5899 5881 1809 226 17 0 chr21 41519279 41519633 -3387937 - L1MB3 LINE L1 0 6183 5824 286 200 27 13 chr21 41519633 41519687 -3387883 - L1MB2 LINE L1 -290 5881 5824 * 1375 220 10 3 chr21 41519682 41519986 -3387584 - L1MB3 LINE L1 -301 5882 5577 261 335 70 5 chr21 41520453 41520668 -3386902 + L1MC4a LINE L1 3506 3734 -2412 511 352 95 55 chr21 41520769 41521241 -3386329 + L1MC4a LINE L1 4743 5233 -913 620 272 126 32 chr21 41521272 41521797 -3385773 + L1MC4a LINE L1 5266 5839 -1969 644 235 64 96 chr21 41521890 41522259 -3385311 - MLT1B LTR MaLR -12 378 13 2152 153 48 0 chr21 41522281 41522698 -3384872 - LTR56 LTR ERV1 -1 444 8 24 0 0 0 chr21 41523016 41523040 -3384530 + AT_rich Low_complexity Low_complexity 1 24 0 306 267 24 2 chr21 41523785 41523941 -3383629 + MER20 DNA MER1_type 1 192 -27 235 29 29 0 chr21 41525268 41525303 -3382267 + AluY SINE Alu 1 36 -266 2442 74 3 0 chr21 41525303 41525615 -3381955 + AluSp SINE Alu 1 313 0 230 263 110 17 chr21 41526477 41526595 -3380975 - MIR SINE MIR -78 184 56 802 226 107 102 chr21 41527258 41527678 -3379892 + MLT1D LTR MaLR 19 443 -62 1770 170 0 25 chr21 41527678 41527995 -3379575 - AluJo SINE Alu -3 309 1 802 226 107 102 chr21 41527995 41528052 -3379518 + MLT1D LTR MaLR 443 498 -7 1026 236 71 26 chr21 41528364 41528715 -3378855 - MLT1A2 LTR MaLR -7 367 1 542 202 24 24 chr21 41528716 41528840 -3378730 - MLT1J LTR MaLR -282 229 106 311 227 0 0 chr21 41528954 41529020 -3378550 - MLT1J LTR MaLR -196 315 250 271 339 40 0 chr21 41529025 41529149 -3378421 - MLT1J LTR MaLR -371 140 12 1334 241 133 7 chr21 41530743 41531157 -3376413 + MLT1C LTR MaLR 2 467 0 201 361 41 0 chr21 41532985 41533082 -3374488 - MIR3 SINE MIR -106 102 2 456 227 36 9 chr21 41533344 41533454 -3374116 + L2 LINE L2 3201 3313 0 409 216 10 10 chr21 41534761 41534863 -3372707 - MLT1C LTR MaLR -6 461 360 281 236 182 27 chr21 41536435 41536545 -3371025 + MIR SINE MIR 40 166 -96 311 259 69 52 chr21 41536718 41536834 -3370736 - L1ME4a LINE L1 -188 5933 5816 287 100 0 0 chr21 41537640 41537680 -3369890 + Alu SINE Alu 1 40 -259 1594 155 14 7 chr21 41537689 41537967 -3369603 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr21 41537967 41537990 -3369580 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 1140 302 135 62 chr21 41538002 41538714 -3368856 - L1MC4a LINE L1 -1215 6593 5830 1230 268 70 7 chr21 41538976 41539405 -3368165 + MLT1C LTR MaLR 6 461 -6 366 308 15 15 chr21 41540970 41541100 -3366470 + MIR SINE MIR 25 154 -108 679 297 113 18 chr21 41542166 41542563 -3365007 - MLT1K LTR MaLR -11 577 143 506 207 0 7 chr21 41542964 41543114 -3364456 + (TG)n Simple_repeat Simple_repeat 1 149 0 293 242 13 157 chr21 41543856 41544009 -3363561 - L2 LINE L2 0 3313 3183 358 311 276 16 chr21 41544169 41544542 -3363028 - L2 LINE L2 -618 2696 2227 202 246 28 7 chr21 41544952 41545094 -3362476 + (TG)n Simple_repeat Simple_repeat 1 145 0 283 225 22 11 chr21 41545105 41545290 -3362280 + (TG)n Simple_repeat Simple_repeat 1 187 0 2022 117 28 0 chr21 41545306 41545597 -3361973 + AluSx SINE Alu 1 299 -13 1209 117 1 0 chr21 41546317 41547107 -3360463 + (CCA)n Simple_repeat Simple_repeat 1 791 0 1221 115 0 2 chr21 41547125 41547462 -3360108 + (CCA)n Simple_repeat Simple_repeat 1 337 -748 1023 139 0 0 chr21 41547462 41547642 -3359928 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 1221 115 0 2 chr21 41547642 41548033 -3359537 + (CCA)n Simple_repeat Simple_repeat 337 1085 0 330 297 21 62 chr21 41548058 41548250 -3359320 + LTR33 LTR ERVL 5 188 -333 392 239 0 18 chr21 41548395 41548508 -3359062 + LTR33 LTR ERVL 403 513 -8 207 0 0 0 chr21 41548897 41548920 -3358650 + (CACGT)n Simple_repeat Simple_repeat 5 27 0 297 138 15 31 chr21 41550033 41550098 -3357472 + MLT1D LTR MaLR 20 83 -543 634 257 44 4 chr21 41550232 41550458 -3357112 + MLT1D LTR MaLR 253 487 -18 861 217 3 0 chr21 41552718 41553061 -3354509 + (CA)n Simple_repeat Simple_repeat 1 344 0 286 304 30 44 chr21 41555307 41555442 -3352128 + MIR3 SINE MIR 15 147 -61 426 257 19 0 chr21 41555529 41555634 -3351936 - MER63 DNA MER1_type -276 785 679 567 259 129 0 chr21 41558385 41558586 -3348984 - MER58 DNA MER1_type -88 253 27 186 326 163 0 chr21 41560042 41560140 -3347430 - MIR SINE MIR -76 132 19 223 275 0 43 chr21 41560498 41560567 -3347003 + C-rich Low_complexity Low_complexity 3 68 0 400 172 103 0 chr21 41560930 41561017 -3346553 + MER81 DNA DNA 4 99 -15 435 249 12 30 chr21 41561525 41561690 -3345880 - L1ME4a LINE L1 -1 6120 5959 444 19 0 0 chr21 41561712 41561765 -3345805 + (TG)n Simple_repeat Simple_repeat 2 54 0 1210 240 133 8 chr21 41561774 41562149 -3345421 + MER74B LTR ERVL 2 423 -199 359 358 89 33 chr21 41562400 41562671 -3344899 - L1ME4a LINE L1 -295 5826 5541 566 244 17 17 chr21 41562858 41563030 -3344540 - MER93b LTR ERV1 -4 369 198 469 298 46 0 chr21 41563235 41563386 -3344184 - MER93a LTR ERV1 -153 249 92 1527 224 57 27 chr21 41563553 41563991 -3343579 + MLT1C LTR MaLR 1 451 -16 296 294 28 0 chr21 41565017 41565126 -3342444 + LTR33A LTR ERVL 407 518 -5 203 244 0 0 chr21 41565372 41565417 -3342153 + (CA)n Simple_repeat Simple_repeat 1 45 0 341 396 112 18 chr21 41565484 41565769 -3341801 + L1MC1 LINE L1 5587 5898 -1910 1372 116 5 0 chr21 41567362 41567560 -3340010 - AluSg/x SINE Alu -14 296 98 949 50 50 0 chr21 41567592 41567713 -3339857 + AluSq/x SINE Alu 1 127 -185 369 0 0 0 chr21 41567755 41567796 -3339774 + (TAA)n Simple_repeat Simple_repeat 2 42 0 193 360 110 0 chr21 41568162 41568262 -3339308 - MIR SINE MIR -117 145 35 314 240 116 8 chr21 41568734 41568814 -3338756 - LTR16A1 LTR ERVL -2 455 385 1267 213 48 80 chr21 41568814 41569214 -3338356 + MLT1B LTR MaLR 3 389 -1 314 240 116 8 chr21 41569214 41569262 -3338308 - LTR16A1 LTR ERVL -72 385 313 221 0 35 0 chr21 41570034 41570063 -3337507 + (CA)n Simple_repeat Simple_repeat 2 31 0 282 93 0 0 chr21 41570201 41570244 -3337326 - MER57B LTR ERV1 -66 368 326 240 191 0 0 chr21 41571112 41571154 -3336416 + MIR SINE MIR 104 145 -117 385 320 23 8 chr21 41573312 41573440 -3334130 + MER94 DNA DNA 2 131 -3 207 171 0 0 chr21 41575978 41576013 -3331557 + GA-rich Low_complexity Low_complexity 1 35 0 605 226 69 0 chr21 41576524 41576683 -3330887 + L1MC1 LINE L1 5945 6114 -219 1059 112 30 12 chr21 41576699 41576868 -3330702 + L1MC1 LINE L1 6162 6333 0 995 244 54 67 chr21 41577471 41577931 -3329639 + MLT1C LTR MaLR 8 461 -6 448 246 18 0 chr21 41578961 41579075 -3328495 + L1MD2 LINE L1 6231 6346 -13 576 200 0 21 chr21 41579106 41579434 -3328136 + (TG)n Simple_repeat Simple_repeat 1 320 0 420 231 8 60 chr21 41581106 41581223 -3326347 + MER103 DNA DNA 4 114 -52 6076 97 19 22 chr21 41581286 41582160 -3325410 + MER4D LTR ERV1 1 872 0 250 407 39 11 chr21 41582284 41582466 -3325104 + L2 LINE L2 3060 3246 -26 249 260 0 27 chr21 41584287 41584360 -3323210 + MER53 DNA DNA 119 189 0 368 328 46 76 chr21 41584555 41584857 -3322713 - HAL1 LINE L1 -1596 911 619 1001 211 0 5 chr21 41585989 41586198 -3321372 - MSTB2 LTR MaLR 0 457 250 2342 79 7 0 chr21 41587673 41587977 -3319593 - AluSc SINE Alu -3 306 1 182 265 239 26 chr21 41588994 41589111 -3318459 - L2 LINE L2 -161 3152 3011 333 202 9 18 chr21 41590793 41590902 -3316668 + (TG)n Simple_repeat Simple_repeat 2 109 0 181 301 21 54 chr21 41591145 41591238 -3316332 - MER5A DNA MER1_type -73 116 27 2235 82 14 0 chr21 41594481 41594774 -3312796 - AluSp SINE Alu -16 297 1 269 250 0 0 chr21 41595196 41595268 -3312302 + (TG)n Simple_repeat Simple_repeat 1 72 0 195 139 39 44 chr21 41595461 41595641 -3311929 + (TG)n Simple_repeat Simple_repeat 1 179 0 214 171 56 8 chr21 41595733 41595993 -3311577 + (TG)n Simple_repeat Simple_repeat 1 272 0 314 209 67 0 chr21 41596008 41596142 -3311428 + (TG)n Simple_repeat Simple_repeat 1 143 0 232 175 60 6 chr21 41596154 41596320 -3311250 + (TG)n Simple_repeat Simple_repeat 1 175 0 511 174 51 29 chr21 41597734 41597872 -3309698 + MER96B DNA MER1_type? 29 169 -248 389 70 18 0 chr21 41598241 41598298 -3309272 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 353 283 117 9 chr21 41598606 41598836 -3308734 - LTR33 LTR ERVL -6 515 261 925 255 88 3 chr21 41599540 41599858 -3307712 - MLT2C1 LTR ERVL -38 359 15 228 257 0 14 chr21 41600899 41600969 -3306601 - MLT1I LTR MaLR -259 150 82 1527 216 45 69 chr21 41601168 41601616 -3305954 - MLT1F1 LTR MaLR 0 567 131 1608 248 133 2 chr21 41601650 41602110 -3305460 + MLT2B1 LTR ERVL 1 520 0 1944 126 41 3 chr21 41602605 41602899 -3304671 + AluSg SINE Alu 1 305 -5 2219 115 0 19 chr21 41603968 41604282 -3303288 + AluSc SINE Alu 1 308 -1 770 128 13 19 chr21 41604288 41604444 -3303126 + GA-rich Low_complexity Low_complexity 4 158 0 2010 136 44 20 chr21 41604445 41604835 -3302735 - MSTA LTR MaLR -29 399 1 183 200 127 18 chr21 41605789 41605844 -3301726 - L2 LINE L2 -10 3303 3243 675 282 118 34 chr21 41606011 41606366 -3301204 + MLT1K LTR MaLR 194 578 -10 310 347 22 19 chr21 41608961 41609114 -3298456 + MIR SINE MIR 46 198 -62 208 244 0 0 chr21 41609153 41609198 -3298372 + (TG)n Simple_repeat Simple_repeat 1 45 0 201 191 16 48 chr21 41610996 41611059 -3296511 + (CCCTG)n Simple_repeat Simple_repeat 1 61 0 981 240 76 48 chr21 41612005 41612401 -3295169 - MLT1C LTR MaLR -60 407 1 190 212 0 0 chr21 41613236 41613269 -3294301 + MIR SINE MIR 114 146 -116 320 285 99 60 chr21 41615451 41615602 -3291968 + L1ME1 LINE L1 2115 2271 -4125 2808 108 10 2 chr21 41615603 41615641 -3291929 + L1PB1 LINE L1 5750 5786 -365 243 0 0 0 chr21 41615641 41615668 -3291902 + (TA)n Simple_repeat Simple_repeat 2 28 0 2808 108 10 2 chr21 41615668 41616026 -3291544 + L1PB1 LINE L1 5786 6149 -2 647 353 65 6 chr21 41616044 41616566 -3291004 + L1ME1 LINE L1 2222 2774 -3441 1223 287 47 48 chr21 41616588 41616710 -3290860 + L1ME1 LINE L1 2877 2998 -3217 2373 80 0 0 chr21 41616710 41617009 -3290561 - AluSx SINE Alu -13 299 1 1223 287 47 48 chr21 41617009 41617421 -3290149 + L1ME1 LINE L1 2998 3412 -2803 1909 148 10 13 chr21 41617421 41617731 -3289839 + AluSx SINE Alu 1 309 -3 1223 287 47 48 chr21 41617731 41617979 -3289591 + L1ME1 LINE L1 3412 3659 -2556 1917 255 49 50 chr21 41617998 41618160 -3289410 + L1ME1 LINE L1 4689 4850 -1385 2507 62 0 0 chr21 41618160 41618468 -3289102 + AluY SINE Alu 1 308 -3 1917 255 49 50 chr21 41618468 41619050 -3288520 + L1ME1 LINE L1 4850 5431 -804 1857 136 20 17 chr21 41619050 41619345 -3288225 + AluJb SINE Alu 5 300 -12 1917 255 49 50 chr21 41619345 41620058 -3287512 + L1ME1 LINE L1 5431 6145 -90 201 74 0 0 chr21 41620450 41620477 -3287093 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 668 87 27 54 chr21 41620576 41620760 -3286810 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 374 182 36 0 chr21 41620774 41620884 -3286686 + CT-rich Low_complexity Low_complexity 3 116 0 202 337 11 22 chr21 41621665 41621754 -3285816 - MIR SINE MIR -173 89 2 206 231 0 0 chr21 41622250 41622289 -3285281 + (CACCAT)n Simple_repeat Simple_repeat 3 41 0 1957 127 19 13 chr21 41623164 41623471 -3284099 + AluSx SINE Alu 3 311 -1 1787 258 73 7 chr21 41623471 41623826 -3283744 - L1MB3 LINE L1 -24 6159 5746 2171 89 7 3 chr21 41623826 41624117 -3283453 - AluSp SINE Alu -10 303 12 1787 258 73 7 chr21 41624117 41624365 -3283205 - L1MB3 LINE L1 -437 5746 5516 31 0 0 0 chr21 41624914 41624945 -3282625 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr21 41625510 41625533 -3282037 + (CAG)n Simple_repeat Simple_repeat 2 24 0 264 59 0 0 chr21 41626720 41626754 -3280816 + (CA)n Simple_repeat Simple_repeat 1 34 0 1834 131 28 7 chr21 41632755 41633037 -3274533 + AluSx SINE Alu 1 288 -24 2150 95 20 16 chr21 41633495 41633799 -3273771 + AluSx SINE Alu 2 306 -6 2379 79 0 0 chr21 41634072 41634376 -3273194 + AluY SINE Alu 1 304 -7 266 328 6 22 chr21 41636891 41637074 -3270496 + C-rich Low_complexity Low_complexity 1 180 0 27 73 0 0 chr21 41637300 41637355 -3270215 + GC_rich Low_complexity Low_complexity 1 55 0 278 132 19 0 chr21 41637358 41637411 -3270159 + (CCG)n Simple_repeat Simple_repeat 1 54 0 211 259 26 26 chr21 41637429 41637545 -3270025 + (CCG)n Simple_repeat Simple_repeat 3 118 0 235 109 0 47 chr21 41637551 41637615 -3269955 + (CCCCG)n Simple_repeat Simple_repeat 4 64 0 23 0 0 0 chr21 41637615 41637638 -3269932 + GC_rich Low_complexity Low_complexity 1 23 0 43 85 0 0 chr21 41637784 41637890 -3269680 + GC_rich Low_complexity Low_complexity 1 106 0 21 82 0 0 chr21 41638025 41638074 -3269496 + GC_rich Low_complexity Low_complexity 1 49 0 27 29 0 0 chr21 41638207 41638241 -3269329 + GC_rich Low_complexity Low_complexity 1 34 0 369 0 0 0 chr21 41638711 41638752 -3268818 + (CA)n Simple_repeat Simple_repeat 1 41 0 1671 205 0 0 chr21 41638978 41639280 -3268290 + AluJb SINE Alu 1 302 -10 248 282 68 10 chr21 41641799 41641902 -3265668 - L2 LINE L2 -26 3246 3138 2322 57 27 0 chr21 41643336 41643632 -3263938 + AluY SINE Alu 5 308 -3 2372 100 0 0 chr21 41644769 41645079 -3262491 - AluSx SINE Alu -2 310 1 285 246 0 0 chr21 41645175 41645293 -3262277 + (CTG)n Simple_repeat Simple_repeat 3 120 0 1460 252 123 14 chr21 41645452 41645873 -3261697 - MLT1C LTR MaLR 0 467 1 820 183 12 12 chr21 41647205 41647374 -3260196 + L1MB3 LINE L1 5427 5595 -576 2406 182 59 0 chr21 41647397 41647841 -3259729 + L1MB3 LINE L1 5713 6182 -1 2152 106 10 0 chr21 41648401 41648704 -3258866 - AluSq SINE Alu -7 306 1 36 0 0 0 chr21 41648731 41648767 -3258803 + AT_rich Low_complexity Low_complexity 1 36 0 603 273 7 0 chr21 41648787 41648930 -3258640 + MSTD LTR MaLR 1 144 -252 229 229 86 29 chr21 41649054 41649194 -3258376 - L1ME4a LINE L1 -1 6120 5973 22 0 0 0 chr21 41649204 41649226 -3258344 + AT_rich Low_complexity Low_complexity 1 22 0 431 288 67 15 chr21 41649279 41649546 -3258024 - L1ME4a LINE L1 -269 5852 5572 334 257 89 75 chr21 41649571 41649635 -3257935 - L1ME4a LINE L1 -659 5503 5441 1711 221 62 20 chr21 41649635 41650083 -3257487 - MLT1C LTR MaLR 0 467 1 334 257 89 75 chr21 41650083 41650205 -3257365 - L1ME4a LINE L1 -721 5441 5310 805 286 62 35 chr21 41650208 41650455 -3257115 - MLT1K LTR MaLR -1 587 325 1792 165 83 81 chr21 41650455 41650671 -3256899 + MSTD LTR MaLR 1 220 -176 414 0 0 0 chr21 41650671 41650717 -3256853 + (TG)n Simple_repeat Simple_repeat 1 46 0 1792 165 83 81 chr21 41650717 41650895 -3256675 + MSTD LTR MaLR 220 396 0 805 286 62 35 chr21 41650895 41651017 -3256553 - MLT1K LTR MaLR -263 325 208 212 343 0 0 chr21 41652324 41652397 -3255173 + (TG)n Simple_repeat Simple_repeat 1 73 0 349 344 0 17 chr21 41653416 41653596 -3253974 + (TG)n Simple_repeat Simple_repeat 2 178 0 219 224 0 0 chr21 41653637 41653713 -3253857 + (TG)n Simple_repeat Simple_repeat 1 76 0 246 279 16 16 chr21 41655139 41655268 -3252302 + (TG)n Simple_repeat Simple_repeat 1 129 0 865 210 25 0 chr21 41657608 41657770 -3249800 - FRAM SINE Alu 0 166 1 751 281 64 57 chr21 41658062 41658482 -3249088 - MLT1C LTR MaLR -36 431 9 233 409 11 0 chr21 41658552 41658645 -3248925 + MIR SINE MIR 126 219 -43 271 256 35 12 chr21 41659256 41659342 -3248228 + MLT1I LTR MaLR 321 408 -1 1439 226 62 14 chr21 41659456 41659827 -3247743 - MLT1B LTR MaLR -1 389 1 412 213 94 8 chr21 41664204 41664331 -3243239 - MER5C DNA MER1_type -66 258 121 966 274 106 7 chr21 41664725 41665141 -3242429 + MLT1C LTR MaLR 1 457 -10 310 288 73 93 chr21 41665894 41666099 -3241471 + L1ME2 LINE L1 5963 6163 -1 215 263 35 0 chr21 41666660 41666717 -3240853 + MIR SINE MIR 88 146 -62 1826 197 108 5 chr21 41669440 41669877 -3237693 + MER31A LTR ERV1 1 482 -3 201 314 43 0 chr21 41671495 41671565 -3236005 - L2 LINE L2 -175 3097 3025 292 330 0 0 chr21 41672103 41672215 -3235355 - MLT1C LTR MaLR -8 459 348 2235 110 0 0 chr21 41672955 41673264 -3234306 + AluSg SINE Alu 1 309 -1 313 204 34 23 chr21 41673777 41673880 -3233690 + L1MC2 LINE L1 6230 6336 -3 583 256 94 74 chr21 41675359 41675793 -3231777 + L1MC5 LINE L1 7352 7794 -167 2232 100 7 3 chr21 41676177 41676478 -3231092 + AluSx SINE Alu 1 302 -10 355 42 117 0 chr21 41678067 41678187 -3229383 + (CA)n Simple_repeat Simple_repeat 1 134 0 698 42 100 12 chr21 41678200 41678530 -3229040 + (CA)n Simple_repeat Simple_repeat 1 359 0 325 162 69 35 chr21 41678575 41678748 -3228822 + (CA)n Simple_repeat Simple_repeat 1 179 0 360 162 52 45 chr21 41678779 41678933 -3228637 + (CA)n Simple_repeat Simple_repeat 1 155 0 413 164 50 0 chr21 41678962 41679102 -3228468 + (TG)n Simple_repeat Simple_repeat 2 148 0 1627 182 40 137 chr21 41682120 41682696 -3224874 + MLT2B1 LTR ERVL 1 520 0 1638 255 82 42 chr21 41683141 41683345 -3224225 + L1ME LINE L1 444 638 -5442 2376 75 0 0 chr21 41683345 41683640 -3223930 + AluSg SINE Alu 1 295 -15 1638 255 82 42 chr21 41683640 41683997 -3223573 + L1ME LINE L1 638 979 -5101 2366 97 3 0 chr21 41683997 41684308 -3223262 + AluSx SINE Alu 1 312 0 1638 255 82 42 chr21 41684308 41684664 -3222906 + L1ME LINE L1 979 1366 -4714 * 1876 220 23 20 chr21 41684657 41685144 -3222426 + L1MC2 LINE L1 5832 6319 -25 2079 134 0 0 chr21 41685188 41685487 -3222083 - AluSx SINE Alu -9 303 5 454 294 114 47 chr21 41685537 41685582 -3221988 + L1ME LINE L1 1351 1392 -4869 681 113 0 0 chr21 41685582 41685679 -3221891 - L1PA5 LINE L1 0 6154 6058 454 294 114 47 chr21 41685679 41685956 -3221614 + L1ME LINE L1 1392 1649 -4612 2277 86 0 0 chr21 41685956 41686246 -3221324 + AluSx SINE Alu 1 290 -22 435 52 0 0 chr21 41686247 41686305 -3221265 + (CA)n Simple_repeat Simple_repeat 2 59 0 454 294 114 47 chr21 41686305 41686596 -3220974 + L1ME LINE L1 1648 2070 -4191 742 262 112 37 chr21 41687640 41688041 -3219529 + MLT1C LTR MaLR 22 452 -15 1386 184 24 0 chr21 41691104 41691354 -3216216 + AluJo SINE Alu 30 285 -27 183 327 93 28 chr21 41691427 41691534 -3216036 + L2 LINE L2 1383 1496 -1818 2131 104 4 0 chr21 41692332 41692636 -3214934 + AluSg SINE Alu 1 305 0 331 155 0 0 chr21 41693251 41693309 -3214261 - AluS SINE Alu -250 58 1 1961 145 3 10 chr21 41693381 41693684 -3213886 + AluSx SINE Alu 1 301 -11 232 261 64 25 chr21 41693684 41693841 -3213729 - L1MEd LINE L1 -5053 1066 904 425 219 10 0 chr21 41694020 41694116 -3213454 - L1MB5 LINE L1 0 6174 6078 338 193 10 91 chr21 41694629 41694760 -3212810 + MIR SINE MIR 56 172 -36 1596 197 54 11 chr21 41695815 41696165 -3211405 - MLT1A1 LTR MaLR 0 365 1 399 259 112 22 chr21 41697531 41697671 -3209899 + L1MC4a LINE L1 5683 5852 -1956 2166 121 0 0 chr21 41697671 41697976 -3209594 + AluSx SINE Alu 1 305 -7 399 259 112 22 chr21 41697976 41698059 -3209511 + L1MC4a LINE L1 5852 5926 -1882 302 248 31 31 chr21 41698261 41698390 -3209180 + LTR16C LTR ERVL 363 491 0 764 327 154 0 chr21 41698618 41699098 -3208472 + L1MB7 LINE L1 5631 6184 0 1725 168 96 8 chr21 41699710 41700097 -3207473 - MSTA LTR MaLR -5 423 3 225 293 23 11 chr21 41700193 41700367 -3207203 + A-rich Low_complexity Low_complexity 4 179 0 2113 120 0 22 chr21 41700469 41700786 -3206784 + AluSx SINE Alu 1 310 -2 1678 181 18 0 chr21 41701203 41701485 -3206085 - AluJo SINE Alu -25 287 1 407 288 91 84 chr21 41701488 41701963 -3205607 - L1MC5 LINE L1 -30 7931 7454 581 206 161 40 chr21 41702239 41702330 -3205240 - L1MC5 LINE L1 -736 7225 7146 2537 50 0 0 chr21 41702330 41702630 -3204940 - AluY SINE Alu -11 300 1 581 206 161 40 chr21 41702630 41702761 -3204809 - L1MC5 LINE L1 -815 7146 6976 233 285 159 0 chr21 41703100 41703251 -3204319 - L2 LINE L2 -2145 1169 995 227 265 73 0 chr21 41703689 41703757 -3203813 - MIR SINE MIR -107 155 83 181 320 40 0 chr21 41705634 41705684 -3201886 - MIR SINE MIR -72 190 139 285 98 0 0 chr21 41706396 41706437 -3201133 + (CA)n Simple_repeat Simple_repeat 2 42 0 2359 226 60 52 chr21 41706480 41706987 -3200583 + L1MB3 LINE L1 4165 4682 -1464 1382 154 150 23 chr21 41706987 41707114 -3200456 - AluJo SINE Alu -1 301 192 1543 112 90 0 chr21 41707114 41707337 -3200233 - AluSc SINE Alu -66 243 1 1382 154 150 23 chr21 41707337 41707475 -3200095 - AluJo SINE Alu -110 192 2 2359 226 60 52 chr21 41707475 41707789 -3199781 + L1MB3 LINE L1 4682 4992 -1154 847 147 0 0 chr21 41707789 41707905 -3199665 + FLAM_C SINE Alu 2 117 -16 484 171 0 0 chr21 41707935 41708023 -3199547 + L1MB3 LINE L1 5776 5863 -320 1927 149 0 3 chr21 41708038 41708334 -3199236 - AluSx SINE Alu -17 295 1 247 288 96 0 chr21 41709137 41709210 -3198360 + Charlie7 DNA MER1_type 610 689 -1923 255 149 51 34 chr21 41710115 41710290 -3197280 + (CA)n Simple_repeat Simple_repeat 1 178 0 334 153 52 24 chr21 41710353 41710607 -3196963 + (CA)n Simple_repeat Simple_repeat 1 261 0 2638 171 14 41 chr21 41711539 41711783 -3195787 + MER44D DNA MER2_type 6 255 -2232 2277 92 3 25 chr21 41711783 41712098 -3195472 - AluSx SINE Alu -4 308 1 2638 171 14 41 chr21 41712098 41712413 -3195157 + MER44D DNA MER2_type 255 605 0 480 184 70 9 chr21 41712470 41712584 -3194986 - MLT1C LTR MaLR -344 123 3 868 253 93 3 chr21 41714026 41714350 -3193220 - L1M4 LINE L1 -1055 5091 4739 457 332 96 8 chr21 41715924 41716301 -3191269 - L1ME LINE L1 -494 5676 5267 2871 107 36 11 chr21 41717532 41718007 -3189563 + LTR15 LTR ERV1 1 487 -6 412 349 61 0 chr21 41719540 41719738 -3187832 + L3 LINE CR1 1220 1429 -148 425 252 54 0 chr21 41720072 41720183 -3187387 + MER103 DNA DNA 7 123 -43 2703 132 59 2 chr21 41720244 41720668 -3186902 - MER83 LTR ERV1 0 448 1 265 311 19 28 chr21 41721373 41721479 -3186091 - L2 LINE L2 -557 2757 2653 853 225 75 39 chr21 41721528 41721835 -3185735 + MLT2C1 LTR ERVL 14 331 -66 251 321 90 50 chr21 41722225 41722568 -3185002 - L2 LINE L2 -2130 1184 828 331 353 0 0 chr21 41722901 41723034 -3184536 + (CA)n Simple_repeat Simple_repeat 2 134 0 1575 156 65 7 chr21 41724164 41724440 -3183130 + AluJo SINE Alu 21 312 0 248 229 0 14 chr21 41728372 41728442 -3179128 + (CAGAGA)n Simple_repeat Simple_repeat 6 74 0 462 191 0 0 chr21 41728459 41728585 -3178985 + (CA)n Simple_repeat Simple_repeat 1 126 0 445 16 0 16 chr21 41729001 41729064 -3178506 + MER4A LTR ERV1 1 62 -602 2683 109 88 20 chr21 41729064 41729641 -3177929 + MER4B LTR ERV1 1 779 0 3164 70 47 128 chr21 41729641 41729911 -3177659 + MER4A LTR ERV1 59 349 -315 2235 90 0 17 chr21 41729911 41730212 -3177358 + AluSq SINE Alu 1 296 -17 3164 70 47 128 chr21 41730212 41730600 -3176970 + MER4A LTR ERV1 349 664 0 2107 145 0 0 chr21 41731713 41732024 -3175546 - AluSx SINE Alu -1 311 1 180 0 0 0 chr21 41733253 41733273 -3174297 + (T)n Simple_repeat Simple_repeat 1 20 0 1923 141 30 7 chr21 41733685 41733990 -3173580 + AluJb SINE Alu 1 312 0 4434 198 34 12 chr21 41734108 41735340 -3172230 + L1MB4 LINE L1 4903 6168 -12 4924 124 61 61 chr21 41735859 41736762 -3170808 + MER4D LTR ERV1 1 903 0 2160 109 3 3 chr21 41737241 41737534 -3170036 + AluSx SINE Alu 2 294 -18 2063 116 0 7 chr21 41737538 41737843 -3169727 + AluSq SINE Alu 1 303 0 1992 138 43 27 chr21 41738813 41739182 -3168388 + THE1C LTR MaLR 1 375 0 2139 109 0 77 chr21 41740387 41740725 -3166845 - AluSx SINE Alu 0 312 1 4253 113 120 7 chr21 41740969 41741669 -3165901 + MER4E LTR ERV1 1 779 0 22 0 0 0 chr21 41742071 41742093 -3165477 + AT_rich Low_complexity Low_complexity 1 22 0 509 225 197 6 chr21 41742386 41742564 -3165006 + L1ME LINE L1 1065 1276 -5147 396 216 14 0 chr21 41742595 41742669 -3164901 + MER58C DNA MER1_type 17 91 -124 446 125 12 0 chr21 41742690 41742770 -3164800 + (TCC)n Simple_repeat Simple_repeat 1 81 0 1479 208 3 7 chr21 41742770 41743058 -3164512 - AluJo SINE Alu -25 287 1 530 175 79 32 chr21 41743061 41743187 -3164383 + MER58C DNA MER1_type 80 211 -4 329 195 49 103 chr21 41743191 41743252 -3164318 + L1ME LINE L1 1284 1347 -5076 2312 89 0 0 chr21 41743252 41743569 -3164001 + AluSg SINE Alu 1 317 0 329 195 49 103 chr21 41743569 41743691 -3163879 + L1ME LINE L1 1347 1458 -4965 275 276 0 0 chr21 41743690 41743766 -3163804 + L1ME LINE L1 2684 2759 -4363 * 6364 213 50 27 chr21 41743782 41745768 -3161802 + L1ME LINE L1 4322 6350 -611 2305 95 0 0 chr21 41745768 41746184 -3161386 + AluSx SINE Alu 1 416 0 6364 213 50 27 chr21 41746184 41746257 -3161313 + L1ME LINE L1 6350 6420 -541 271 209 45 0 chr21 41746284 41746351 -3161219 + L1ME1 LINE L1 6092 6161 -5 2177 125 0 3 chr21 41746379 41746683 -3160887 + AluSx SINE Alu 1 303 -9 1542 267 105 42 chr21 41746686 41746766 -3160804 + HAL1 LINE L1 361 435 -2072 2138 113 3 0 chr21 41746766 41747072 -3160498 - AluSx SINE Alu 0 307 1 1542 267 105 42 chr21 41747072 41747722 -3159848 + HAL1 LINE L1 435 1139 -1368 592 270 227 44 chr21 41748008 41748849 -3158721 + L2 LINE L2 1698 2692 -622 1208 119 0 0 chr21 41748854 41749044 -3158526 - AluSg/x SINE Alu 0 311 122 209 394 79 4 chr21 41749047 41749288 -3158282 + L2 LINE L2 2697 2955 -359 5451 90 13 13 chr21 41749328 41750094 -3157476 + MER4E LTR ERV1 1 766 0 3266 217 104 33 chr21 41750094 41751090 -3156480 + L1MCa LINE L1 153 1101 -4944 1863 155 29 82 chr21 41751090 41751502 -3156068 - MLT1B LTR MaLR 0 390 1 3266 217 104 33 chr21 41751502 41751579 -3155991 + L1MCa LINE L1 1101 1171 -4874 247 269 384 0 chr21 41751581 41751797 -3155773 + L2 LINE L2 3014 3312 -1 602 196 189 75 chr21 41752251 41752557 -3155013 + L1MCa LINE L1 1125 1465 -5099 * 11669 191 31 23 chr21 41752556 41756684 -3150886 + L1MB7 LINE L1 3 4220 -2947 1407 219 7 20 chr21 41756684 41756985 -3150585 + AluJo SINE Alu 1 297 -15 11669 191 31 23 chr21 41756985 41758503 -3149067 + L1MB7 LINE L1 4220 5724 -1443 2389 182 85 23 chr21 41758556 41759206 -3148364 + L1MB7 LINE L1 6694 7179 -26 2054 100 54 0 chr21 41759206 41759485 -3148085 + AluSx SINE Alu 1 294 -18 2389 182 85 23 chr21 41759485 41759514 -3148056 + L1MB7 LINE L1 7179 7205 0 590 272 39 51 chr21 41759495 41759749 -3147821 - L1ME2 LINE L1 -7 6157 5907 * 240 302 89 50 chr21 41761234 41761413 -3146157 + MIR SINE MIR 63 248 -14 358 218 73 18 chr21 41762219 41762329 -3145241 + L2 LINE L2 3138 3253 -19 1465 275 118 16 chr21 41762366 41763632 -3143938 + L1ME3A LINE L1 4391 5801 -369 1944 173 15 0 chr21 41763632 41763956 -3143614 + Tigger4(Zombi) DNA MER2_type 1 329 -2402 2538 129 11 0 chr21 41763961 41764341 -3143229 + Tigger4(Zombi) DNA MER2_type 2348 2731 0 871 172 86 43 chr21 41764351 41764560 -3143010 + MER20 DNA MER1_type 1 218 -1 433 263 88 6 chr21 41764560 41764857 -3142713 + L1ME3A LINE L1 5798 6162 -8 2123 141 0 0 chr21 41764865 41765164 -3142406 + AluSx SINE Alu 1 299 -13 15127 168 43 26 chr21 41765171 41767010 -3140560 + L1MA4A LINE L1 5 1812 -5193 2651 96 8 39 chr21 41767010 41767397 -3140173 - THE1C LTR MaLR 0 375 1 15127 168 43 26 chr21 41767397 41769872 -3137698 + L1MA4A LINE L1 1812 4244 -2761 2416 107 0 0 chr21 41769872 41770182 -3137388 + AluSg SINE Alu 1 310 0 15127 168 43 26 chr21 41770182 41772744 -3134826 + L1MA4A LINE L1 4244 7000 -5 249 289 0 24 chr21 41772749 41772832 -3134738 + GA-rich Low_complexity Low_complexity 4 84 0 201 274 0 0 chr21 41773056 41773107 -3134463 + MIR SINE MIR 191 241 -21 2314 117 42 25 chr21 41774058 41774416 -3133154 - THE1B LTR MaLR 0 364 1 8766 97 12 0 chr21 41774416 41775568 -3132002 - THE1B-int LTR MaLR 0 1580 415 333 247 120 25 chr21 41776092 41776250 -3131320 + L1ME LINE L1 5127 5299 -847 260 231 90 75 chr21 41776352 41776486 -3131084 + L1ME LINE L1 5505 5640 -481 3268 63 7 12 chr21 41776590 41777021 -3130549 - THE1B-int LTR MaLR -1151 429 1 2236 104 41 44 chr21 41777021 41777386 -3130184 - THE1B LTR MaLR 0 364 1 204 40 0 0 chr21 41778032 41778057 -3129513 + (A)n Simple_repeat Simple_repeat 1 25 0 330 264 14 86 chr21 41778374 41778514 -3129056 - MARNA DNA Mariner -56 530 401 * 361 218 103 0 chr21 41778463 41778541 -3129029 + MARNA DNA Mariner 133 218 -368 2079 112 47 7 chr21 41778616 41778912 -3128658 + AluSg SINE Alu 1 308 -2 278 297 157 34 chr21 41779074 41779310 -3128260 + L2 LINE L2 1998 2262 -1052 * 419 280 191 9 chr21 41779293 41779643 -3127927 + L2 LINE L2 2830 3243 -70 2470 87 3 0 chr21 41779957 41780267 -3127303 - AluSx SINE Alu 0 312 2 279 264 97 45 chr21 41781048 41781203 -3126367 + MIR SINE MIR 46 208 -54 219 250 12 62 chr21 41783512 41783592 -3123978 + MIR SINE MIR 15 90 -172 2473 65 0 0 chr21 41784739 41785045 -3122525 - AluY SINE Alu -5 306 1 2114 120 3 0 chr21 41786225 41786526 -3121044 + AluSx SINE Alu 1 302 -10 405 211 0 0 chr21 41787268 41787344 -3120226 - MER116 DNA Mariner -4 76 1 286 288 176 13 chr21 41787772 41787925 -3119645 - MLT1L LTR MaLR -18 597 420 1197 171 87 128 chr21 41788039 41788508 -3119062 + LTR7 LTR ERV1 1 450 0 373 254 36 64 chr21 41788620 41788730 -3118840 + MER5B DNA MER1_type 7 113 -65 352 313 71 16 chr21 41790524 41790706 -3116864 + L2 LINE L2 2227 2418 -896 2374 84 0 0 chr21 41791493 41791803 -3115767 + AluY SINE Alu 1 310 -1 279 310 46 75 chr21 41791910 41792149 -3115421 - MLT1K LTR MaLR -165 423 192 1250 243 23 39 chr21 41794620 41795007 -3112563 - MLT2B1 LTR ERVL -90 430 4 247 351 134 21 chr21 41795011 41795250 -3112320 - L1MEd LINE L1 -5586 533 268 282 29 0 0 chr21 41795375 41795410 -3112160 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1541 181 3 14 chr21 41795413 41795701 -3111869 + AluJo SINE Alu 1 285 -27 198 217 174 14 chr21 41795811 41795880 -3111690 - L2 LINE L2 -660 2654 2575 1135 108 6 6 chr21 41795881 41796048 -3111522 + AluSg/x SINE Alu 130 296 -16 1185 246 58 36 chr21 41796055 41796384 -3111186 - L2 LINE L2 -745 2569 2234 326 271 153 64 chr21 41796607 41796843 -3110727 + L3b LINE CR1 1102 1358 -225 324 343 207 5 chr21 41796908 41797106 -3110464 - MIR SINE MIR -6 256 19 748 154 16 0 chr21 41797178 41797301 -3110269 - AluSp/q SINE Alu 0 313 189 180 353 29 72 chr21 41797308 41797447 -3110123 + L3b LINE CR1 1451 1583 0 2290 94 3 0 chr21 41797772 41798080 -3109490 + AluSp SINE Alu 1 309 -4 243 196 89 0 chr21 41798306 41798362 -3109208 - MIR3 SINE MIR -22 186 126 2136 102 0 0 chr21 41798484 41798791 -3108779 + AluSq SINE Alu 1 307 0 655 291 126 4 chr21 41798847 41799077 -3108493 + MIR SINE MIR 5 262 0 1344 199 111 72 chr21 41799309 41799741 -3107829 - LTR40b LTR ERVL -7 455 7 2951 216 58 49 chr21 41799744 41801410 -3106160 + L1ME1 LINE L1 4490 6161 -5 2905 165 45 13 chr21 41802037 41802570 -3105000 + MER44D DNA MER2_type 1 605 0 495 276 94 46 chr21 41803747 41804352 -3103218 + L1MEd LINE L1 624 1257 -4862 662 281 185 21 chr21 41804353 41804724 -3102846 + L1MEd LINE L1 1301 1633 -4496 212 224 15 0 chr21 41805061 41805128 -3102442 + GA-rich Low_complexity Low_complexity 4 71 0 425 215 31 119 chr21 41805128 41805367 -3102203 + L1M1 LINE L1 3463 3660 -3905 1625 181 17 3 chr21 41805367 41805655 -3101915 + AluSx SINE Alu 1 292 -20 425 215 31 119 chr21 41805655 41805764 -3101806 + L1M1 LINE L1 3660 3777 -3788 1638 184 3 0 chr21 41805765 41806064 -3101506 + AluJo SINE Alu 1 300 -12 2013 87 84 0 chr21 41806120 41806407 -3101163 - AluSx SINE Alu 0 312 2 387 267 64 23 chr21 41806415 41806587 -3100983 + L1M1 LINE L1 3813 3991 -3574 242 189 172 41 chr21 41806598 41806767 -3100803 + L1M1 LINE L1 4207 4397 -3168 225 0 0 0 chr21 41806776 41806801 -3100769 + (CA)n Simple_repeat Simple_repeat 2 26 0 489 286 41 0 chr21 41806834 41806981 -3100589 + L1ME LINE L1 15 167 -5903 1368 170 9 76 chr21 41806982 41807299 -3100271 + AluJo SINE Alu 11 306 -6 268 312 68 47 chr21 41807366 41807706 -3099864 + L1ME LINE L1 252 598 -5472 686 214 100 18 chr21 41807762 41807907 -3099663 - MER96B DNA MER1_type? -4 413 243 1637 191 13 0 chr21 41807907 41808205 -3099365 - AluJo SINE Alu -10 302 1 686 214 100 18 chr21 41808205 41808279 -3099291 - MER96B DNA MER1_type? -174 243 176 191 340 135 21 chr21 41808351 41808492 -3099078 + L2 LINE L2 3116 3272 0 2071 91 0 85 chr21 41808569 41808910 -3098660 - AluSx SINE Alu 0 312 1 630 227 0 30 chr21 41809267 41809399 -3098171 + MER58B DNA MER1_type 214 341 0 2213 112 0 0 chr21 41809900 41810205 -3097365 + AluSx SINE Alu 1 305 -7 609 301 86 38 chr21 41811338 41811886 -3095684 - L1ME3A LINE L1 -309 5861 5288 704 50 70 27 chr21 41814586 41814884 -3092686 + (CA)n Simple_repeat Simple_repeat 1 311 0 492 57 68 51 chr21 41814911 41815087 -3092483 + (CA)n Simple_repeat Simple_repeat 1 179 0 527 72 69 34 chr21 41815111 41815552 -3092018 + (CA)n Simple_repeat Simple_repeat 1 456 0 275 69 69 30 chr21 41815594 41815695 -3091875 + (CA)n Simple_repeat Simple_repeat 1 105 0 390 139 39 8 chr21 41815763 41815892 -3091678 + (CA)n Simple_repeat Simple_repeat 2 134 0 394 244 34 11 chr21 41815937 41816113 -3091457 + (CA)n Simple_repeat Simple_repeat 1 180 0 455 243 28 17 chr21 41816137 41816314 -3091256 + (CA)n Simple_repeat Simple_repeat 2 180 0 335 188 8 35 chr21 41817302 41817393 -3090177 + L1 LINE L1 4039 4127 -2019 1962 130 0 10 chr21 41817393 41817693 -3089877 + AluJb SINE Alu 1 297 -15 4559 173 11 12 chr21 41817697 41819075 -3088495 + L1PA16 LINE L1 4351 5730 -436 1350 189 0 39 chr21 41819076 41819386 -3088184 + AluJo SINE Alu 9 307 0 2588 161 0 18 chr21 41819386 41819833 -3087737 + L1PA16 LINE L1 5719 6157 -9 277 207 114 36 chr21 41820479 41820619 -3086951 + L1P LINE L1 5255 5405 -749 1595 144 3 57 chr21 41820696 41820994 -3086576 + AluJb SINE Alu 1 282 -30 380 271 130 39 chr21 41821063 41821390 -3086180 + L1ME LINE L1 5485 5839 -327 1116 179 0 46 chr21 41821426 41821644 -3085926 + AluJb SINE Alu 85 292 -20 294 352 27 19 chr21 41821737 41822050 -3085520 + L1MDa LINE L1 27 624 -5906 663 241 74 80 chr21 41822446 41822757 -3084813 + L1MDa LINE L1 917 1225 -5318 2561 43 0 0 chr21 41822758 41823061 -3084509 + AluY SINE Alu 1 303 -8 647 157 14 71 chr21 41823071 41823211 -3084359 + FLAM_A SINE Alu 1 132 -1 1597 217 53 98 chr21 41823284 41823920 -3083650 + MLT1E2 LTR MaLR 19 626 0 1868 161 3 0 chr21 41824471 41824769 -3082801 + AluJo SINE Alu 2 300 -12 1130 168 91 5 chr21 41825016 41825225 -3082345 + MER46A DNA MER2_type 9 235 -1 353 322 41 0 chr21 41825590 41825791 -3081779 - L1M4 LINE L1 -2026 4120 3910 415 264 119 4 chr21 41826266 41826410 -3081160 + MLT1G1 LTR MaLR 429 595 0 29 0 0 0 chr21 41826430 41826459 -3081111 + AT_rich Low_complexity Low_complexity 1 29 0 620 265 110 75 chr21 41826483 41826750 -3080820 + MLT1H1 LTR MaLR 3 259 -296 1926 152 3 0 chr21 41826750 41827047 -3080523 + AluSx SINE Alu 1 298 -14 2207 97 7 0 chr21 41827047 41827345 -3080225 + AluY SINE Alu 8 307 -4 620 265 110 75 chr21 41827345 41827599 -3079971 + MLT1H1 LTR MaLR 258 555 0 2100 123 0 0 chr21 41828060 41828361 -3079209 + AluSx SINE Alu 1 301 -11 1567 192 10 17 chr21 41828365 41828662 -3078908 + AluJo SINE Alu 1 295 -17 1320 178 7 30 chr21 41828773 41829043 -3078527 + L1ME1 LINE L1 4765 5028 -1118 2249 82 3 31 chr21 41829043 41829360 -3078210 + AluY SINE Alu 1 308 -3 516 183 302 0 chr21 41829374 41829500 -3078070 - AluJo SINE Alu -2 300 137 927 181 0 0 chr21 41829502 41829651 -3077919 + Tigger1 DNA MER2_type 2270 2418 0 429 167 56 19 chr21 41829651 41829759 -3077811 + L1ME1 LINE L1 5225 5336 -810 * 7690 174 34 23 chr21 41829758 41830805 -3076765 + L1M3f LINE L1 6 1040 -5288 1426 208 14 3 chr21 41830805 41831089 -3076481 + AluJo SINE Alu 2 288 -24 426 69 0 0 chr21 41831089 41831147 -3076423 + (CAT)n Simple_repeat Simple_repeat 2 59 0 7690 174 34 23 chr21 41831147 41831633 -3075937 + L1M3f LINE L1 1040 1519 -4809 2119 152 0 0 chr21 41831633 41831942 -3075628 + AluSx SINE Alu 1 309 -3 7690 174 34 23 chr21 41831942 41833360 -3074210 + L1M3f LINE L1 1519 2976 -3352 722 206 8 0 chr21 41833360 41833491 -3074079 - AluJo SINE Alu -169 133 2 7690 174 34 23 chr21 41833491 41833897 -3073673 + L1M3f LINE L1 2976 3376 -2952 1086 176 29 0 chr21 41834434 41834638 -3072932 + L1ME1 LINE L1 5550 5759 -425 267 250 105 41 chr21 41835570 41835742 -3071828 + L1MCc LINE L1 91 273 -6150 421 199 46 102 chr21 41835785 41835981 -3071589 + L1ME1 LINE L1 5962 6146 -20 2053 154 174 0 chr21 41836768 41837164 -3070406 + LTR24 LTR ERV1 3 467 0 2126 104 3 23 chr21 41837256 41837555 -3070015 - AluSx SINE Alu -14 298 6 240 287 20 10 chr21 41837911 41838012 -3069558 + MER5B DNA MER1_type 26 127 -51 14977 122 45 10 chr21 41838100 41839672 -3067898 + Tigger1 DNA MER2_type 1 1683 -735 2098 104 4 0 chr21 41839672 41839940 -3067630 + AluSp SINE Alu 1 269 -44 14977 122 45 10 chr21 41839940 41840703 -3066867 + Tigger1 DNA MER2_type 1683 2418 0 441 202 76 22 chr21 41841408 41841555 -3066015 + L1MB7 LINE L1 6007 6171 -5 343 221 12 0 chr21 41842272 41842435 -3065135 + (CA)n Simple_repeat Simple_repeat 1 165 0 459 189 0 27 chr21 41842457 41842642 -3064928 + (CA)n Simple_repeat Simple_repeat 1 180 0 524 198 5 0 chr21 41842665 41842886 -3064684 + (CA)n Simple_repeat Simple_repeat 1 222 0 940 127 59 189 chr21 41842886 41843252 -3064318 + Tigger2 DNA MER2_type 1 2703 -15 180 111 0 0 chr21 41843260 41843287 -3064283 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2839 180 169 23 chr21 41845490 41846023 -3061547 + L1MB8 LINE L1 4369 4823 -1323 2234 105 0 38 chr21 41846023 41846336 -3061234 + AluSx SINE Alu 1 301 -11 926 155 246 52 chr21 41846346 41846678 -3060892 + AluJb SINE Alu 1 302 0 2839 180 169 23 chr21 41846678 41847007 -3060563 + L1MB8 LINE L1 4830 5370 -776 2185 104 40 0 chr21 41847010 41847307 -3060263 + AluSx SINE Alu 3 311 -1 503 155 0 0 chr21 41847309 41847393 -3060177 + L1MB8 LINE L1 5652 5735 -443 882 131 15 0 chr21 41847395 41847525 -3060045 + AluSq/x SINE Alu 1 132 -181 1215 201 105 10 chr21 41847534 41847847 -3059723 + L1MB8 LINE L1 5726 6068 -110 * 4794 214 50 46 chr21 41847835 41847875 -3059695 + L1MD2 LINE L1 3915 3953 -2406 243 0 0 0 chr21 41847875 41847902 -3059668 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1513 174 42 48 chr21 41847909 41848219 -3059351 + AluJo SINE Alu 1 308 -4 4794 214 50 46 chr21 41848219 41848566 -3059004 + L1MD2 LINE L1 3958 4302 -2057 1905 129 8 0 chr21 41848566 41848829 -3058741 + AluSx SINE Alu 1 265 -47 4794 214 50 46 chr21 41848829 41850408 -3057162 + L1MD2 LINE L1 4302 5899 -460 1578 189 7 14 chr21 41850408 41850699 -3056871 + AluJb SINE Alu 2 290 -22 4794 214 50 46 chr21 41850699 41851146 -3056424 + L1MD2 LINE L1 5899 6343 -16 2030 42 0 29 chr21 41851446 41851687 -3055883 - AluY SINE Alu -77 234 1 1854 104 116 8 chr21 41852054 41852322 -3055248 + AluSg1 SINE Alu 1 297 -12 916 138 0 22 chr21 41852402 41852540 -3055030 + AluJo SINE Alu 1 135 -177 27 0 0 0 chr21 41852572 41852599 -3054971 + AT_rich Low_complexity Low_complexity 1 27 0 898 185 17 0 chr21 41852599 41852772 -3054798 + AluJo SINE Alu 130 305 -7 1092 68 0 0 chr21 41853176 41853309 -3054261 - AluSx SINE Alu 0 310 178 597 133 0 0 chr21 41853309 41853399 -3054171 - AluSx SINE Alu -221 91 2 21 0 0 0 chr21 41853546 41853567 -3054003 + AT_rich Low_complexity Low_complexity 1 21 0 1886 119 62 108 chr21 41853684 41854066 -3053504 + MSTB1 LTR MaLR 16 377 -55 2406 73 10 0 chr21 41854066 41854366 -3053204 + AluY SINE Alu 2 304 -7 1886 119 62 108 chr21 41854366 41854420 -3053150 + MSTB1 LTR MaLR 377 432 0 997 190 22 0 chr21 41855609 41855793 -3051777 - MER5A DNA MER1_type 0 189 2 733 125 62 23 chr21 41856422 41856550 -3051020 + FLAM_C SINE Alu 1 133 0 228 221 115 58 chr21 41857317 41857421 -3050149 + L2 LINE L2 3200 3309 -4 1933 118 45 14 chr21 41857632 41857919 -3049651 - AluSx SINE Alu -16 296 1 1757 120 0 0 chr21 41858100 41858341 -3049229 + AluSg/x SINE Alu 66 306 -6 549 268 155 36 chr21 41858575 41858963 -3048607 + LTR33 LTR ERVL 48 481 -40 327 183 75 58 chr21 41859315 41859435 -3048135 - L1MC4 LINE L1 0 8042 7921 995 158 7 0 chr21 41859454 41859606 -3047964 - AluSg/x SINE Alu -23 289 137 23 33 0 0 chr21 41859631 41859661 -3047909 + AT_rich Low_complexity Low_complexity 1 30 0 1216 134 0 0 chr21 41859661 41859840 -3047730 + AluSg/x SINE Alu 121 299 -11 21 36 0 0 chr21 41859969 41859997 -3047573 + AT_rich Low_complexity Low_complexity 1 28 0 2498 52 3 0 chr21 41860603 41860893 -3046677 - AluY SINE Alu -20 291 1 24 0 0 0 chr21 41860894 41860918 -3046652 + AT_rich Low_complexity Low_complexity 1 24 0 2351 112 0 0 chr21 41861091 41861396 -3046174 - AluSx SINE Alu -7 305 1 245 293 40 10 chr21 41861586 41861685 -3045885 - MIR SINE MIR -29 233 132 2226 93 7 0 chr21 41862519 41862809 -3044761 + AluSx SINE Alu 11 302 -10 225 262 0 0 chr21 41863226 41863242 -3044328 + GA-rich Low_complexity Low_complexity 4 19 -45 1982 102 7 32 chr21 41863242 41863525 -3044045 + AluSx SINE Alu 1 276 -36 225 262 0 0 chr21 41863525 41863569 -3044001 + GA-rich Low_complexity Low_complexity 18 64 0 581 51 0 41 chr21 41863570 41863668 -3043902 + (GGGAA)n Simple_repeat Simple_repeat 4 97 0 360 322 58 62 chr21 41864021 41864427 -3043143 - L2 LINE L2 -529 2785 2343 2837 187 96 11 chr21 41864427 41865043 -3042527 + LTR65 LTR ERV1 2 669 0 360 322 58 62 chr21 41865043 41865343 -3042227 - L2 LINE L2 -971 2343 2043 445 239 80 0 chr21 41865728 41865866 -3041704 - LTR33 LTR ERVL 0 521 373 552 249 124 21 chr21 41865894 41866135 -3041435 - LTR33 LTR ERVL -216 305 40 507 159 234 0 chr21 41867359 41867466 -3040104 + FLAM_C SINE Alu 2 133 -10 1737 134 54 0 chr21 41867477 41867754 -3039816 + AluSx SINE Alu 1 292 -20 1860 126 3 39 chr21 41869404 41869713 -3037857 + AluJo SINE Alu 1 298 -14 23 0 0 0 chr21 41869923 41869946 -3037624 + GC_rich Low_complexity Low_complexity 1 23 0 205 171 0 0 chr21 41870219 41870254 -3037316 + (CTGGGG)n Simple_repeat Simple_repeat 6 40 0 275 304 229 27 chr21 41870540 41870670 -3036900 - L2 LINE L2 -63 3250 3148 2454 68 7 0 chr21 41870670 41870980 -3036590 + AluSp SINE Alu 1 312 -1 275 304 229 27 chr21 41870980 41871221 -3036349 - L2 LINE L2 -165 3148 2804 254 330 113 21 chr21 41871561 41871755 -3035815 + L2 LINE L2 2174 2385 -929 227 283 30 30 chr21 41871992 41872091 -3035479 + L2 LINE L2 2627 2725 -589 451 191 19 48 chr21 41873146 41873251 -3034319 - L2 LINE L2 0 3313 3212 356 322 16 0 chr21 41873285 41873406 -3034164 + MER104 DNA Tc2 50 172 -8 1984 121 30 7 chr21 41873647 41873945 -3033625 - AluSg SINE Alu -5 305 1 2249 108 0 13 chr21 41873945 41874250 -3033320 - AluSx SINE Alu -11 301 1 869 106 43 155 chr21 41874539 41874746 -3032824 + AluSp SINE Alu 130 313 0 2537 100 22 14 chr21 41875037 41875398 -3032172 - THE1B LTR MaLR 0 364 1 235 108 0 27 chr21 41875866 41875903 -3031667 - MLT1K LTR MaLR -2 586 551 751 114 0 0 chr21 41875925 41876039 -3031531 - AluSg/x SINE Alu -2 310 197 1038 171 217 0 chr21 41876045 41876303 -3031267 + MSTB1 LTR MaLR 119 432 0 252 300 154 49 chr21 41876536 41876783 -3030787 + MLT1K LTR MaLR 185 457 -131 2091 111 7 7 chr21 41876826 41877123 -3030447 + AluSc SINE Alu 2 298 -11 820 214 104 39 chr21 41877123 41877478 -3030092 - L1MC5 LINE L1 -312 7649 7272 986 162 9 102 chr21 41877605 41877851 -3029719 - AluJo SINE Alu 0 312 87 446 145 0 13 chr21 41877866 41877942 -3029628 - FLAM SINE Alu -22 121 47 247 224 0 0 chr21 41877964 41878013 -3029557 - L1MC5 LINE L1 -733 7228 7180 2343 93 0 3 chr21 41878314 41878614 -3028956 + AluSx SINE Alu 1 299 -13 2265 84 0 36 chr21 41878749 41879057 -3028513 - AluY SINE Alu -14 297 1 1207 120 150 0 chr21 41880974 41881174 -3026396 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr21 41881305 41881326 -3026244 + AT_rich Low_complexity Low_complexity 1 21 0 1855 145 10 26 chr21 41881751 41882062 -3025508 - AluJb SINE Alu -6 306 1 1885 145 13 3 chr21 41882072 41882375 -3025195 - AluSx SINE Alu -6 306 1 2366 93 0 0 chr21 41883740 41884051 -3023519 + AluSx SINE Alu 1 311 -1 1934 137 0 14 chr21 41884553 41884845 -3022725 - AluSx SINE Alu -24 288 1 237 65 0 0 chr21 41884970 41885001 -3022569 + (T)n Simple_repeat Simple_repeat 1 31 0 1131 172 101 0 chr21 41886125 41886232 -3021338 - MER30 DNA MER1_type 0 230 135 495 0 0 0 chr21 41886232 41886287 -3021283 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 1131 172 101 0 chr21 41886287 41886388 -3021182 - MER30 DNA MER1_type -95 135 1 4013 175 38 69 chr21 41888118 41888552 -3019018 - L1PB1 LINE L1 -217 5934 5488 2027 108 7 7 chr21 41888552 41888847 -3018723 - AluSq SINE Alu -18 295 1 4013 175 38 69 chr21 41888847 41889675 -3017895 - L1PB1 LINE L1 -663 5488 4783 2032 108 0 14 chr21 41889675 41889961 -3017609 - AluSx SINE Alu -30 282 1 4013 175 38 69 chr21 41889961 41890598 -3016972 - L1PB1 LINE L1 -1368 4783 4128 352 173 151 50 chr21 41890610 41890638 -3016932 + L1ME4a LINE L1 5967 5991 -130 1483 172 58 31 chr21 41890638 41890666 -3016904 - AluJo SINE Alu -13 299 273 2128 95 0 20 chr21 41890666 41890971 -3016599 + AluSg SINE Alu 1 299 -11 1483 172 58 31 chr21 41890971 41891233 -3016337 - AluJo SINE Alu -39 273 1 352 173 151 50 chr21 41891233 41891343 -3016227 + L1ME4a LINE L1 5991 6119 -2 1891 121 3 10 chr21 41891346 41891636 -3015934 + AluSq SINE Alu 1 288 -25 429 70 0 0 chr21 41891636 41891693 -3015877 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1835 100 75 14 chr21 41891746 41892027 -3015543 - AluSp SINE Alu -15 298 1 1699 182 3 16 chr21 41892058 41892366 -3015204 + AluJb SINE Alu 1 304 -8 824 164 0 22 chr21 41892375 41892509 -3015061 + FLAM_C SINE Alu 3 133 0 2200 109 10 0 chr21 41893257 41893561 -3014009 - AluSq SINE Alu -6 307 1 21 0 0 0 chr21 41894076 41894097 -3013473 + AT_rich Low_complexity Low_complexity 1 21 0 2105 79 25 0 chr21 41894100 41894379 -3013191 + AluSx SINE Alu 15 300 -12 2381 61 0 0 chr21 41894464 41894759 -3012811 - AluY SINE Alu -16 295 1 312 356 50 6 chr21 41895524 41895684 -3011886 - MIR SINE MIR -9 253 87 183 114 0 0 chr21 41896121 41896156 -3011414 + (T)n Simple_repeat Simple_repeat 1 35 0 1084 188 0 0 chr21 41896311 41896503 -3011067 + AluJo SINE Alu 85 276 -36 1541 139 54 4 chr21 41899204 41899463 -3008107 - AluSg SINE Alu -38 272 1 498 262 81 0 chr21 41899517 41899666 -3007904 + MER58B DNA MER1_type 172 332 -9 2149 99 0 34 chr21 41902012 41902335 -3005235 - AluSx SINE Alu 0 312 1 2193 100 0 13 chr21 41902707 41903006 -3004564 + AluSg SINE Alu 1 295 -15 330 309 0 0 chr21 41903060 41903144 -3004426 + (TG)n Simple_repeat Simple_repeat 2 85 0 1155 236 116 91 chr21 41907011 41907080 -3000490 + L1M4c LINE L1 659 725 -5659 1791 156 0 29 chr21 41907080 41907387 -3000183 + AluJb SINE Alu 1 298 -14 1155 236 116 91 chr21 41907387 41907623 -2999947 + L1M4c LINE L1 725 954 -5430 1673 76 127 22 chr21 41907623 41907898 -2999672 + AluSg1 SINE Alu 1 304 -5 1155 236 116 91 chr21 41907898 41908527 -2999043 + L1M4c LINE L1 954 1603 -4781 821 188 117 47 chr21 41908536 41908566 -2999004 - L1MB5 LINE L1 -1 6173 6147 1806 135 20 14 chr21 41908566 41908862 -2998708 - AluSx SINE Alu -9 303 6 821 188 117 47 chr21 41908862 41908908 -2998662 - L1MB5 LINE L1 -27 6147 6106 4014 101 9 20 chr21 41908908 41909462 -2998108 + LTR14 LTR ERVK 1 548 0 821 188 117 47 chr21 41909462 41909640 -2997930 - L1MB5 LINE L1 -68 6106 5900 1954 129 3 13 chr21 41909757 41910059 -2997511 + AluSc SINE Alu 1 299 -10 1964 139 0 7 chr21 41911200 41911509 -2996061 + AluJb SINE Alu 1 307 -5 215 300 100 15 chr21 41911610 41911740 -2995830 - L2 LINE L2 0 3272 3132 412 199 143 58 chr21 41911746 41911785 -2995785 - Charlie5 DNA MER1_type -23 2601 2567 2072 94 10 17 chr21 41911785 41912082 -2995488 - AluSc SINE Alu -14 295 1 412 199 143 58 chr21 41912082 41912300 -2995270 - Charlie5 DNA MER1_type -57 2567 7 364 264 23 0 chr21 41913949 41914051 -2993519 + MLT1A1 LTR MaLR 1 102 -263 936 266 66 35 chr21 41914073 41914331 -2993239 - MER7A DNA MER2_type -2692 346 79 2250 71 14 0 chr21 41914331 41914628 -2992942 + AluSx SINE Alu 1 301 -11 936 266 66 35 chr21 41914628 41914655 -2992915 - MER7A DNA MER2_type -2959 79 54 808 152 59 2 chr21 41914680 41914939 -2992631 - MLT1A1 LTR MaLR -33 332 1 2158 105 0 3 chr21 41915065 41915360 -2992210 + AluSx SINE Alu 1 294 -18 978 157 6 0 chr21 41915416 41915575 -2991995 + L1PA16 LINE L1 5804 5963 -203 1399 169 19 4 chr21 41915575 41915831 -2991739 + L1PA16 LINE L1 5902 6166 0 2128 128 0 0 chr21 41915834 41916146 -2991424 + AluSx SINE Alu 1 312 0 320 285 63 51 chr21 41916161 41916319 -2991251 + HAL1 LINE L1 2347 2506 -1 2363 97 0 0 chr21 41916366 41916677 -2990893 + AluSx SINE Alu 1 311 -1 2162 118 0 3 chr21 41916698 41917004 -2990566 + AluSx SINE Alu 1 305 -7 887 121 7 7 chr21 41917186 41917327 -2990243 - FLAM_C SINE Alu -2 141 1 2136 55 3 97 chr21 41917337 41917666 -2989904 - AluY SINE Alu -13 298 1 439 155 186 0 chr21 41917870 41917967 -2989603 + FLAM_C SINE Alu 1 115 -18 2392 165 26 9 chr21 41917967 41918385 -2989185 + MSTB LTR MaLR 1 426 0 943 191 6 0 chr21 41918414 41918576 -2988994 + FRAM SINE Alu 1 163 -3 337 265 90 24 chr21 41918692 41918858 -2988712 - L1MC2 LINE L1 -174 6170 5994 318 308 10 0 chr21 41918860 41918964 -2988606 - L1MC2 LINE L1 -274 6070 5966 1424 170 38 24 chr21 41918965 41919140 -2988430 - AluJo SINE Alu -17 295 113 212 0 36 0 chr21 41919140 41919168 -2988402 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1424 170 38 24 chr21 41919168 41919280 -2988290 - AluJo SINE Alu -199 113 4 246 111 0 0 chr21 41919368 41919404 -2988166 - Alu SINE Alu -266 36 1 3225 188 42 16 chr21 41919406 41919773 -2987797 - L1MC2 LINE L1 -373 5971 5576 2124 80 57 13 chr21 41919773 41920073 -2987497 - AluSq SINE Alu 0 313 1 3225 188 42 16 chr21 41920073 41920387 -2987183 - L1MC2 LINE L1 -768 5576 5272 1683 156 6 48 chr21 41920388 41920702 -2986868 + AluJb SINE Alu 2 302 -10 2109 79 0 0 chr21 41920702 41920967 -2986603 + AluSq SINE Alu 1 265 -48 460 122 0 52 chr21 41920979 41921094 -2986476 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 473 183 0 0 chr21 41921128 41921210 -2986360 - MER74C LTR ERVL 0 460 379 794 196 7 0 chr21 41921215 41921358 -2986212 - MER74C LTR ERVL 0 460 317 1840 194 64 5 chr21 41921361 41921798 -2985772 + L1MCa LINE L1 1096 1558 -4868 2215 57 14 17 chr21 41921839 41922136 -2985434 + AluY SINE Alu 15 310 -1 343 160 84 122 chr21 41922138 41922269 -2985301 + MER51C LTR ERV1 453 578 -62 2173 104 6 22 chr21 41922299 41922617 -2984953 + AluSp SINE Alu 1 313 0 3468 152 23 24 chr21 41922808 41923427 -2984143 + LTR35 LTR ERV1 1 618 0 1800 158 0 16 chr21 41923461 41923765 -2983805 - AluJo SINE Alu -2 310 12 2123 107 0 7 chr21 41923786 41924086 -2983484 - AluSg SINE Alu -11 299 2 2146 132 56 129 chr21 41924147 41924446 -2983124 + MER4B LTR ERV1 1 320 -290 2443 53 7 0 chr21 41924446 41924747 -2982823 - AluY SINE Alu -8 303 1 2146 132 56 129 chr21 41924747 41924791 -2982779 + MER4B LTR ERV1 320 366 -244 2137 53 53 3 chr21 41924791 41925076 -2982494 - AluY SINE Alu -7 304 6 2146 132 56 129 chr21 41925076 41925173 -2982397 + MER4B LTR ERV1 366 469 -141 2147 107 0 0 chr21 41925173 41925462 -2982108 - AluSg SINE Alu -20 290 2 2124 126 0 0 chr21 41925470 41925764 -2981806 - AluSx SINE Alu -18 294 1 2146 132 56 129 chr21 41925764 41925886 -2981684 + MER4B LTR ERV1 476 532 -78 2872 135 56 4 chr21 41925886 41926635 -2980935 + LTR1B LTR ERV1 1 826 0 507 133 0 0 chr21 41926635 41926718 -2980852 + MER4E LTR ERV1 697 779 0 250 295 181 0 chr21 41927218 41927367 -2980203 + MER5B DNA MER1_type 1 176 -2 321 104 104 78 chr21 41927841 41927918 -2979652 - MER49 LTR ERV1 0 923 845 742 270 17 0 chr21 41927919 41928093 -2979477 - LTR1B LTR ERV1 0 826 650 2181 113 0 3 chr21 41928102 41928412 -2979158 - AluSg SINE Alu -1 309 1 33 0 0 0 chr21 41929214 41929247 -2978323 + GC_rich Low_complexity Low_complexity 1 33 0 210 71 0 0 chr21 41929271 41929299 -2978271 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 29 47 0 0 chr21 41929445 41929488 -2978082 + GC_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr21 41929643 41929683 -2977887 + GC_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr21 41930086 41930107 -2977463 + GC_rich Low_complexity Low_complexity 1 21 0 494 288 152 16 chr21 41932887 41933222 -2974348 - MLT1C LTR MaLR 0 467 179 2390 69 0 7 chr21 41933222 41933527 -2974043 - AluY SINE Alu -8 303 1 2243 100 0 22 chr21 41933530 41933849 -2973721 - AluSx SINE Alu 0 312 1 494 288 152 16 chr21 41933849 41933927 -2973643 - MLT1C LTR MaLR -289 178 7 1756 180 3 0 chr21 41934950 41935255 -2972315 + AluJo SINE Alu 3 308 -4 2279 81 0 3 chr21 41935430 41935726 -2971844 + AluY SINE Alu 1 295 -16 2143 119 3 3 chr21 41935916 41936228 -2971342 + AluSx SINE Alu 1 312 0 243 0 0 0 chr21 41936401 41936428 -2971142 + (TC)n Simple_repeat Simple_repeat 2 28 0 2314 67 6 13 chr21 41936649 41936962 -2970608 - AluY SINE Alu 0 311 1 1046 90 8 0 chr21 41936962 41937096 -2970474 - AluSq/x SINE Alu -177 135 1 435 236 21 13 chr21 41937154 41937399 -2970171 + (TG)n Simple_repeat Simple_repeat 1 247 0 1743 154 9 31 chr21 41940045 41940364 -2967206 + AluJo SINE Alu 1 312 0 261 0 0 0 chr21 41940491 41940520 -2967050 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2062 89 32 0 chr21 41940534 41940814 -2966756 - AluSx SINE Alu -23 289 1 693 228 93 30 chr21 41940821 41941062 -2966508 + MER63 DNA MER1_type 682 943 -118 1898 160 0 3 chr21 41941062 41941355 -2966215 + AluJo SINE Alu 3 294 -18 693 228 93 30 chr21 41941355 41941381 -2966189 + MER63 DNA MER1_type 943 966 -95 831 126 0 52 chr21 41941389 41941524 -2966046 - FLAM_C SINE Alu -5 128 1 519 221 133 12 chr21 41941586 41941843 -2965727 - MLT1E2 LTR MaLR -326 300 8 2041 135 3 3 chr21 41943124 41943436 -2964134 - AluJb SINE Alu 0 312 1 313 341 115 22 chr21 41943543 41943725 -2963845 - L1ME3A LINE L1 -44 6126 5928 206 232 0 29 chr21 41944550 41944619 -2962951 + G-rich Low_complexity Low_complexity 6 72 0 501 329 35 12 chr21 41944728 41944898 -2962672 + MIR SINE MIR 60 233 -29 283 186 17 0 chr21 41946824 41946883 -2960687 - L1ME3A LINE L1 -434 5750 5691 940 162 12 17 chr21 41946998 41947010 -2960560 - AluJb SINE Alu -1 311 300 1913 164 0 3 chr21 41947010 41947322 -2960248 - AluJo SINE Alu -1 311 1 940 162 12 17 chr21 41947322 41947482 -2960088 - AluJb SINE Alu -12 300 140 431 243 18 0 chr21 41947488 41947599 -2959971 - MER68 LTR ERV1 -289 273 161 183 271 51 0 chr21 41948215 41948274 -2959296 + MIR3 SINE MIR 118 179 -29 1273 209 28 22 chr21 41948450 41948771 -2958799 + MLT1B LTR MaLR 1 323 -67 3064 97 6 23 chr21 41948836 41949311 -2958259 + LTR14 LTR ERVK 1 467 -81 1836 85 0 4 chr21 41949311 41949558 -2958012 - AluY SINE Alu -1 310 65 1136 87 0 7 chr21 41949561 41949711 -2957859 - AluSq/x SINE Alu -164 149 1 612 105 11 0 chr21 41949711 41949806 -2957764 + LTR14 LTR ERVK 453 548 0 2062 110 17 28 chr21 41949806 41950162 -2957408 - THE1C LTR MaLR -23 352 1 466 211 35 0 chr21 41951538 41951822 -2955748 + (CGGG)n Simple_repeat Simple_repeat 1 293 0 1870 157 0 7 chr21 41952565 41952870 -2954700 - AluJb SINE Alu -9 303 1 341 137 0 0 chr21 41952904 41952955 -2954615 - Alu SINE Alu -257 51 1 1502 164 56 25 chr21 41952983 41953269 -2954301 + AluJo SINE Alu 1 295 -17 2305 222 33 81 chr21 41954951 41955526 -2952044 + L1MB4 LINE L1 5429 5957 -223 2298 99 0 0 chr21 41955526 41955829 -2951741 + AluSx SINE Alu 1 303 -9 2305 222 33 81 chr21 41955829 41956042 -2951528 + L1MB4 LINE L1 5957 6179 -1 1795 193 0 0 chr21 41956103 41956403 -2951167 + AluJb SINE Alu 1 300 -12 866 210 31 58 chr21 41956675 41956799 -2950771 - MER58B DNA MER1_type -2095 325 210 1905 162 7 3 chr21 41956799 41957107 -2950463 - AluSx SINE Alu -3 309 1 866 210 31 58 chr21 41957107 41957239 -2950331 - MER58B DNA MER1_type -2210 210 76 1688 161 20 17 chr21 41957239 41957537 -2950033 + AluJb SINE Alu 1 299 -13 2223 84 24 0 chr21 41958599 41958897 -2948673 + AluSq SINE Alu 2 306 -7 213 65 22 43 chr21 41959073 41959119 -2948451 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 196 30 61 0 chr21 41959476 41959509 -2948061 + T-rich Low_complexity Low_complexity 2 36 0 2119 89 4 4 chr21 41959512 41959792 -2947778 - AluSx SINE Alu -31 281 2 584 243 0 6 chr21 41961088 41961269 -2946301 + (TG)n Simple_repeat Simple_repeat 1 180 0 330 225 0 0 chr21 41961301 41961381 -2946189 + (TG)n Simple_repeat Simple_repeat 1 80 0 1100 248 67 56 chr21 41961587 41961655 -2945915 - MLT1A1 LTR MaLR -2 363 297 2187 90 0 14 chr21 41961655 41961973 -2945597 + AluSx SINE Alu 1 314 0 1100 248 67 56 chr21 41961973 41962262 -2945308 - MLT1A1 LTR MaLR -68 297 1 240 111 0 0 chr21 41962490 41962526 -2945044 + (TG)n Simple_repeat Simple_repeat 1 36 0 342 268 0 0 chr21 41963551 41963674 -2943896 + (CA)n Simple_repeat Simple_repeat 1 123 0 201 74 0 0 chr21 41968364 41968391 -2939179 + (T)n Simple_repeat Simple_repeat 1 27 0 192 301 126 10 chr21 41968693 41968796 -2938774 - L2 LINE L2 -1878 1436 1322 2337 103 0 0 chr21 41970553 41970864 -2936706 - AluSx SINE Alu 0 312 2 1661 185 131 9 chr21 41973444 41973888 -2933682 - MLT1D LTR MaLR -6 499 2 1633 174 125 34 chr21 41973911 41973991 -2933579 - LTR47A LTR ERVL 0 452 381 2272 100 0 3 chr21 41973991 41974301 -2933269 + AluSg SINE Alu 1 309 -1 1633 174 125 34 chr21 41974301 41974628 -2932942 - LTR47A LTR ERVL -71 381 8 1697 152 19 29 chr21 41975395 41975710 -2931860 - AluJo SINE Alu 0 312 1 326 208 28 0 chr21 41975721 41975793 -2931777 - L1MB7 LINE L1 0 6184 6111 324 197 38 148 chr21 41975897 41975969 -2931601 + MLT1C LTR MaLR 17 95 -372 1666 138 0 127 chr21 41975969 41976118 -2931452 + AluJb SINE Alu 1 81 -231 2345 70 0 7 chr21 41976118 41976417 -2931153 + AluSp SINE Alu 2 298 -15 1666 138 0 127 chr21 41976417 41976622 -2930948 + AluJb SINE Alu 81 310 -2 324 197 38 148 chr21 41976622 41976732 -2930838 + MLT1C LTR MaLR 95 179 -288 2085 124 0 0 chr21 41976848 41977139 -2930431 + AluSx SINE Alu 1 291 -21 367 265 0 9 chr21 41977681 41977917 -2929653 + (CA)n Simple_repeat Simple_repeat 1 233 0 1758 154 0 10 chr21 41979915 41980208 -2927362 + AluJb SINE Alu 5 294 -18 2225 118 0 0 chr21 41980212 41980525 -2927045 + AluSq SINE Alu 1 313 0 1583 154 7 21 chr21 41981049 41981328 -2926242 - AluJb SINE Alu -1 311 37 180 373 74 30 chr21 41981674 41981972 -2925598 + L2 LINE L2 2898 3208 -64 2839 81 16 3 chr21 41981990 41982360 -2925210 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr21 41982539 41982561 -2925009 + AT_rich Low_complexity Low_complexity 1 22 0 1742 86 29 65 chr21 41982573 41982852 -2924718 - AluSx SINE Alu -30 282 14 2013 130 0 16 chr21 41983238 41983546 -2924024 - AluSx SINE Alu -9 303 1 254 308 103 0 chr21 41984164 41984271 -2923299 + MIR SINE MIR 4 121 -141 2093 108 14 0 chr21 41985330 41985627 -2921943 + AluSq SINE Alu 1 301 -12 260 300 0 33 chr21 41985749 41985839 -2921731 - MIR SINE MIR -70 192 106 1204 177 115 9 chr21 41986054 41986393 -2921177 + MER31A LTR ERV1 1 375 -110 205 0 171 0 chr21 41986833 41986868 -2920702 + (CGGGG)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 41986980 41987002 -2920568 + GC_rich Low_complexity Low_complexity 1 22 0 2608 39 3 0 chr21 41987367 41987677 -2919893 - AluY SINE Alu 0 311 1 2266 88 0 0 chr21 41987677 41987974 -2919596 - AluSg SINE Alu -13 297 1 1476 179 84 7 chr21 41987974 41988259 -2919311 - AluJb SINE Alu -1 311 5 694 125 78 55 chr21 41988259 41988387 -2919183 - AluJo SINE Alu -175 137 7 502 202 87 29 chr21 41988992 41989200 -2918370 - MER89 LTR ERV1 0 559 340 1812 190 78 39 chr21 41989200 41989664 -2917906 - LTR26B LTR ERV1 0 531 50 257 128 21 0 chr21 41989664 41989711 -2917859 + CT-rich Low_complexity Low_complexity 4 51 0 1996 110 36 23 chr21 41989718 41990026 -2917544 - AluSx SINE Alu 0 312 1 45 0 0 0 chr21 41990054 41990099 -2917471 + AT_rich Low_complexity Low_complexity 1 45 0 240 212 0 0 chr21 41990164 41990230 -2917340 - MER89 LTR ERV1 -492 67 2 495 297 83 31 chr21 41990294 41990523 -2917047 + MIR SINE MIR 22 262 0 1574 153 4 8 chr21 41990583 41990845 -2916725 - AluJb SINE Alu -3 309 49 3656 181 45 25 chr21 41990845 41991487 -2916083 + LTR8A LTR ERV1 1 660 -67 2208 102 0 3 chr21 41991487 41991782 -2915788 - AluSx SINE Alu -17 295 2 3656 181 45 25 chr21 41991782 41991848 -2915722 + LTR8A LTR ERV1 660 723 -4 367 125 0 0 chr21 41991848 41991904 -2915666 - AluJb SINE Alu -243 56 1 1558 183 71 80 chr21 41992000 41992049 -2915521 + LTR56 LTR ERV1 1 49 -396 2170 85 3 10 chr21 41992049 41992343 -2915227 - AluY SINE Alu -19 292 1 1558 183 71 80 chr21 41992343 41992630 -2914940 + LTR56 LTR ERV1 49 337 -108 1985 123 0 7 chr21 41992630 41992946 -2914624 + AluSq SINE Alu 1 314 0 1558 183 71 80 chr21 41992946 41993055 -2914515 + LTR56 LTR ERV1 337 445 0 4471 68 7 0 chr21 41994302 41994850 -2912720 - MER41A LTR ERV1 0 554 3 743 184 0 0 chr21 41994954 41995068 -2912502 + AluJ SINE Alu 2 115 -187 2908 62 2 5 chr21 41995068 41995468 -2912102 + MLT2A1 LTR ERVL 2 400 -44 356 54 27 27 chr21 41995475 41995549 -2912021 + (TA)n Simple_repeat Simple_repeat 1 74 0 324 78 0 0 chr21 41995557 41995608 -2911962 + MLT2A1 LTR ERVL 399 449 -4 1090 171 6 0 chr21 41995609 41995784 -2911786 + AluJ SINE Alu 107 282 -30 212 0 36 0 chr21 41995789 41995817 -2911753 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2046 111 14 0 chr21 41996011 41996299 -2911271 + AluSx SINE Alu 1 292 -20 2147 74 35 0 chr21 41996366 41996650 -2910920 - AluY SINE Alu -17 294 1 496 248 14 14 chr21 41997857 41997998 -2909572 + MLT1C LTR MaLR 42 182 -285 636 97 10 6 chr21 41998002 41998256 -2909314 + AluSx SINE Alu 1 303 0 2105 107 0 19 chr21 41998287 41998595 -2908975 - AluSx SINE Alu -10 302 1 447 242 73 101 chr21 41998603 41998689 -2908881 - L1MC4 LINE L1 0 8042 7955 2501 31 0 0 chr21 41998689 41998977 -2908593 - AluY SINE Alu -23 288 1 447 242 73 101 chr21 41998977 41999138 -2908432 - L1MC4 LINE L1 -87 7955 7802 2475 69 0 0 chr21 41999185 41999488 -2908082 - AluSg SINE Alu -6 304 2 895 126 48 18 chr21 41999502 41999669 -2907901 + AluJb SINE Alu 121 292 -20 486 213 138 63 chr21 42000600 42000671 -2906899 + MER5A DNA MER1_type 3 67 -122 634 191 46 30 chr21 42000671 42000802 -2906768 + FLAM_A SINE Alu 1 133 0 486 213 138 63 chr21 42000802 42000904 -2906666 + MER5A DNA MER1_type 67 189 0 1465 150 23 42 chr21 42000973 42001279 -2906291 - AluJb SINE Alu -12 300 1 322 292 17 33 chr21 42001318 42001438 -2906132 - L1ME3A LINE L1 -3 6167 6050 2240 97 0 3 chr21 42001892 42002192 -2905378 - AluSq SINE Alu -14 299 1 199 314 87 64 chr21 42002474 42002646 -2904924 + MER5A DNA MER1_type 1 176 -13 228 67 0 0 chr21 42002960 42002990 -2904580 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 209 296 78 61 chr21 42003258 42003373 -2904197 - MIR SINE MIR -19 243 127 447 287 66 0 chr21 42003483 42003605 -2903965 + MER5B DNA MER1_type 2 131 -47 1382 167 16 19 chr21 42005944 42006202 -2901368 - AluJb SINE Alu -17 295 39 1259 216 30 4 chr21 42006248 42006516 -2901054 + AluSc SINE Alu 1 275 -34 193 288 91 0 chr21 42011457 42011523 -2896047 - MER5A DNA MER1_type -1 188 117 1401 101 18 0 chr21 42011860 42012077 -2895493 - AluJo SINE Alu -9 303 83 801 266 55 0 chr21 42012204 42012422 -2895148 + MER46A DNA MER2_type 1 230 -6 2287 92 7 0 chr21 42015384 42015687 -2891883 + AluSp SINE Alu 1 305 -8 329 132 0 0 chr21 42016245 42016298 -2891272 + FRAM/FAM SINE Alu 24 76 -99 533 189 63 8 chr21 42016304 42016431 -2891139 - L1MB8 LINE L1 -15 6163 6030 634 289 101 20 chr21 42016523 42016821 -2890749 - L1MB8 LINE L1 -299 5879 5558 269 310 62 62 chr21 42017065 42017208 -2890362 - L1MC4 LINE L1 -128 7914 7769 674 179 41 0 chr21 42017208 42017331 -2890239 + FLAM_A SINE Alu 1 128 -5 269 310 62 62 chr21 42017331 42017413 -2890157 - L1MC4 LINE L1 -272 7770 7689 * 328 273 67 37 chr21 42017405 42017569 -2890001 - L1MC4 LINE L1 -1033 6834 6621 656 252 180 22 chr21 42017677 42017837 -2889733 - MLT1B LTR MaLR -17 373 240 2206 96 3 0 chr21 42017837 42018130 -2889440 - AluSg SINE Alu -16 294 1 656 252 180 22 chr21 42018130 42018291 -2889279 - MLT1B LTR MaLR -150 240 1 310 238 300 18 chr21 42018331 42018554 -2889016 - MLT2D LTR ERVL -57 357 72 236 250 83 0 chr21 42018689 42018773 -2888797 - L1MC4a LINE L1 -1254 6554 6464 239 250 17 0 chr21 42022353 42022413 -2885157 + MIR SINE MIR 90 150 -58 274 246 268 0 chr21 42023308 42023446 -2884124 - MLT1E1 LTR MaLR -254 400 226 2343 77 7 0 chr21 42024322 42024619 -2882951 - AluSg SINE Alu -11 299 1 236 293 173 16 chr21 42025385 42025634 -2881936 - L2 LINE L2 -178 3135 2848 291 338 0 0 chr21 42025660 42025808 -2881762 + G-rich Low_complexity Low_complexity 1 148 0 942 246 53 0 chr21 42025836 42026117 -2881453 - MLT1B LTR MaLR 0 390 95 528 219 8 16 chr21 42026205 42026328 -2881242 - MLT1B LTR MaLR -268 122 1 1681 155 0 43 chr21 42028583 42028887 -2878683 - AluJb SINE Alu -2 310 20 312 250 0 0 chr21 42028887 42028999 -2878571 + (CA)n Simple_repeat Simple_repeat 1 112 0 473 256 30 30 chr21 42029211 42029414 -2878156 - HAL1 LINE L1 -1322 1185 983 214 268 0 28 chr21 42029860 42029931 -2877639 + G-rich Low_complexity Low_complexity 6 74 0 356 276 38 0 chr21 42030439 42030544 -2877026 + MIR3 SINE MIR 78 186 -22 1099 233 68 24 chr21 42030835 42031217 -2876353 + MLT1C LTR MaLR 60 458 -9 2182 94 3 0 chr21 42031228 42031527 -2876043 - AluSc SINE Alu -9 300 1 363 277 128 18 chr21 42031548 42031830 -2875740 + L1M4 LINE L1 3626 3938 -2208 23 33 0 0 chr21 42031890 42031920 -2875650 + AT_rich Low_complexity Low_complexity 1 30 0 514 14 0 41 chr21 42031930 42032003 -2875567 + (TCTCCC)n Simple_repeat Simple_repeat 5 74 0 9968 50 5 79 chr21 42032003 42033439 -2874131 + SVA Other Other 57 1386 0 1090 207 0 0 chr21 42033448 42033646 -2873924 + MLT1D LTR MaLR 262 459 -46 2450 60 0 0 chr21 42033673 42033973 -2873597 + AluY SINE Alu 2 301 -10 727 128 9 0 chr21 42033974 42034083 -2873487 - FLAM_A SINE Alu -32 110 1 1045 125 6 0 chr21 42034240 42034400 -2873170 - AluJb SINE Alu -5 307 147 251 244 138 106 chr21 42035571 42035694 -2871876 + MIR SINE MIR 119 245 -17 600 273 98 7 chr21 42035966 42036411 -2871159 - MER115 DNA AcHobo -62 631 89 855 109 0 43 chr21 42037634 42037772 -2869798 + AluSg/x SINE Alu 164 295 -14 1719 143 0 64 chr21 42037785 42038114 -2869456 + AluJo SINE Alu 1 308 -4 1529 120 0 0 chr21 42038123 42038332 -2869238 + AluSx SINE Alu 1 209 -103 418 160 13 13 chr21 42038334 42038409 -2869161 + AluJo SINE Alu 77 151 -161 1901 131 34 0 chr21 42038410 42038701 -2868869 + AluSx SINE Alu 1 301 -11 1119 236 135 11 chr21 42038707 42039193 -2868377 + L1ME LINE L1 5109 5661 -503 826 143 136 0 chr21 42039193 42039340 -2868230 + AluSg/x SINE Alu 138 304 -6 501 238 231 0 chr21 42039357 42039504 -2868066 - Charlie1a DNA MER1_type -1114 341 161 908 230 157 0 chr21 42039512 42039786 -2867784 - L1MB3 LINE L1 -8 6175 5859 417 262 0 56 chr21 42039801 42039927 -2867643 - Charlie1a DNA MER1_type -1281 174 56 2237 71 0 0 chr21 42040526 42040834 -2866736 + AluY SINE Alu 2 309 0 568 172 40 33 chr21 42041188 42041339 -2866231 + Charlie4 DNA MER1_type 1804 1955 -6 349 161 0 0 chr21 42041340 42041396 -2866174 + U6 snRNA snRNA 1 56 -51 1976 132 7 0 chr21 42041429 42041725 -2865845 + AluJo SINE Alu 6 303 -9 269 341 15 8 chr21 42041971 42042103 -2865467 - L1MC4 LINE L1 -812 7230 7098 369 294 109 34 chr21 42042204 42042257 -2865313 - L1MC4 LINE L1 -938 7104 7056 2108 108 0 0 chr21 42042257 42042543 -2865027 - AluSx SINE Alu -14 298 13 369 294 109 34 chr21 42042543 42042754 -2864816 - L1MC4 LINE L1 -986 7056 6820 181 230 97 71 chr21 42043023 42043136 -2864434 + L2 LINE L2 2470 2585 -729 2174 108 0 0 chr21 42043669 42043966 -2863604 - AluSc SINE Alu -12 297 1 630 228 39 53 chr21 42043985 42044191 -2863379 + L1M3 LINE L1 5569 5771 -409 313 111 0 114 chr21 42044271 42044372 -2863198 + Alu SINE Alu 237 301 0 234 245 0 0 chr21 42046560 42046609 -2860961 + GA-rich Low_complexity Low_complexity 3 51 0 602 217 16 8 chr21 42046671 42046800 -2860770 + L1M4 LINE L1 14 143 -6399 1240 82 29 6 chr21 42046800 42047002 -2860568 + AluY SINE Alu 109 314 0 1450 217 75 55 chr21 42047003 42047454 -2860116 + L1M4 LINE L1 163 622 -5920 836 211 31 4 chr21 42047452 42047680 -2859890 + L1M4 LINE L1 3307 3540 -3104 * 3823 152 10 45 chr21 42047679 42047944 -2859626 + L1MC1 LINE L1 5430 5703 -630 1916 162 0 3 chr21 42047944 42048253 -2859317 + AluJo SINE Alu 1 308 -4 3823 152 10 45 chr21 42048253 42048501 -2859069 + L1MC1 LINE L1 5703 5958 -375 1865 247 76 23 chr21 42048501 42048597 -2858973 - MER34 LTR ERV1 0 542 452 1891 102 69 0 chr21 42048597 42048866 -2858704 + AluSx SINE Alu 1 289 -19 219 36 0 0 chr21 42048866 42048894 -2858676 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1865 247 76 23 chr21 42048898 42049316 -2858254 - MER34 LTR ERV1 -90 452 1 3823 152 10 45 chr21 42049316 42049514 -2858056 + L1MC1 LINE L1 5958 6117 -216 1860 122 18 4 chr21 42049516 42049828 -2857742 + AluSx SINE Alu 1 316 0 4510 194 73 88 chr21 42049828 42049874 -2857696 - L1M4 LINE L1 -476 5708 5663 2495 49 13 0 chr21 42049874 42050180 -2857390 - AluY SINE Alu -1 310 1 4510 194 73 88 chr21 42050180 42050620 -2856950 - L1M4 LINE L1 -521 5663 5218 1751 172 3 10 chr21 42050620 42050934 -2856636 - AluJo SINE Alu 0 312 1 1847 103 96 0 chr21 42050941 42051213 -2856357 - AluSx SINE Alu -14 298 1 4510 194 73 88 chr21 42051213 42051279 -2856291 - L1M4 LINE L1 -972 5212 5147 1829 143 0 0 chr21 42051279 42051552 -2856018 + AluSx SINE Alu 1 273 -39 4510 194 73 88 chr21 42051552 42051833 -2855737 - L1M4 LINE L1 -1037 5147 4863 2192 74 0 0 chr21 42051833 42052149 -2855421 - AluY SINE Alu 0 316 1 4510 194 73 88 chr21 42052149 42052545 -2855025 - L1M4 LINE L1 -1321 4863 4462 2190 114 0 0 chr21 42052545 42052843 -2854727 + AluSx SINE Alu 1 298 -14 4510 194 73 88 chr21 42052843 42053075 -2854495 - L1M4 LINE L1 -1722 4462 4228 306 0 0 0 chr21 42053075 42053109 -2854461 + (TG)n Simple_repeat Simple_repeat 1 34 0 4510 194 73 88 chr21 42053109 42053451 -2854119 - L1M4 LINE L1 -1956 4228 3919 2252 81 0 3 chr21 42053451 42053762 -2853808 - AluSp SINE Alu 0 312 3 1866 118 0 77 chr21 42053764 42054087 -2853483 - AluSx SINE Alu -14 298 1 796 158 15 8 chr21 42054087 42054220 -2853350 - AluJo SINE Alu -177 135 2 2517 235 11 43 chr21 42054224 42054782 -2852788 - L1M4 LINE L1 -2301 3845 3322 2298 88 0 0 chr21 42054782 42055076 -2852494 + AluSx SINE Alu 1 294 -18 2517 235 11 43 chr21 42055076 42055359 -2852211 - L1M4 LINE L1 -2824 3322 3031 741 174 38 76 chr21 42055364 42055548 -2852022 - L1MC1 LINE L1 -5 6328 6152 1442 106 0 0 chr21 42055549 42055748 -2851822 - AluSg/x SINE Alu -10 300 102 903 226 69 23 chr21 42055888 42056149 -2851421 + MLT1F1 LTR MaLR 295 567 0 1842 157 7 10 chr21 42056514 42056813 -2850757 + AluJb SINE Alu 1 298 -14 1053 187 23 19 chr21 42056865 42057079 -2850491 - AluJb SINE Alu -89 223 9 1975 113 0 0 chr21 42057321 42057632 -2849938 + AluSx SINE Alu 2 312 0 2050 101 11 0 chr21 42058644 42058962 -2848608 - AluSx SINE Alu 0 321 1 640 230 98 109 chr21 42059149 42059506 -2848064 - MLT1H LTR MaLR 0 549 197 1132 101 0 0 chr21 42059538 42059696 -2847874 - AluSq SINE Alu -3 310 153 2622 133 4 58 chr21 42059696 42060177 -2847393 - MER41B LTR ERV1 -180 455 1 567 120 0 93 chr21 42060605 42060713 -2846857 + MER4A LTR ERV1 1 98 -566 470 101 21 141 chr21 42060709 42060805 -2846765 + MER4A LTR ERV1 257 363 -301 * 2181 98 7 0 chr21 42060805 42061101 -2846469 + AluSx SINE Alu 6 303 -9 470 101 21 141 chr21 42061101 42061190 -2846380 + MER4A LTR ERV1 363 479 -185 1855 179 39 19 chr21 42061194 42061558 -2846012 - THE1C LTR MaLR 0 375 5 260 93 0 47 chr21 42061558 42061601 -2845969 - THE1B LTR MaLR -323 41 1 1098 136 22 16 chr21 42061601 42061785 -2845785 + MER4A LTR ERV1 480 664 0 184 281 18 0 chr21 42062837 42062894 -2844676 - MIR SINE MIR -37 225 168 2263 66 14 0 chr21 42063238 42063526 -2844044 - AluSp SINE Alu -21 292 1 1738 188 0 3 chr21 42063528 42063837 -2843733 - AluJb SINE Alu -4 308 1 1460 219 35 28 chr21 42064450 42064837 -2842733 + MLT1B LTR MaLR 1 467 0 1890 137 20 0 chr21 42065799 42066092 -2841478 - AluSx SINE Alu -13 299 1 288 0 0 0 chr21 42066782 42066814 -2840756 + (TA)n Simple_repeat Simple_repeat 2 33 0 2446 52 16 7 chr21 42066815 42067123 -2840447 - AluY SINE Alu 0 311 1 2220 114 0 0 chr21 42067365 42067697 -2839873 + AluSq SINE Alu 2 333 0 2182 99 3 0 chr21 42067707 42068001 -2839569 + AluSx SINE Alu 5 299 -13 1833 136 7 18 chr21 42068004 42068326 -2839244 + AluSq SINE Alu 2 320 0 1555 155 4 4 chr21 42068330 42068582 -2838988 + AluJb SINE Alu 39 290 -22 2061 95 10 3 chr21 42068603 42068898 -2838672 - AluSx SINE Alu -15 297 1 4056 79 22 7 chr21 42070019 42070565 -2837005 - MER41A LTR ERV1 0 554 1 243 261 31 0 chr21 42070995 42071060 -2836510 - MIR SINE MIR -57 151 85 2034 114 3 13 chr21 42071449 42071757 -2835813 + AluSx SINE Alu 1 305 -7 471 176 0 55 chr21 42071869 42071960 -2835610 - AluY SINE Alu -8 303 218 261 309 270 0 chr21 42072028 42072206 -2835364 + MIR SINE MIR 33 258 -4 712 141 289 6 chr21 42072367 42072523 -2835047 - AluJb SINE Alu -31 281 82 1096 201 108 4 chr21 42072661 42072769 -2834801 + AluJo SINE Alu 11 106 -206 185 0 40 0 chr21 42072769 42072794 -2834776 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1096 201 108 4 chr21 42072794 42072934 -2834636 + AluJo SINE Alu 106 285 -27 35 0 0 0 chr21 42072937 42072972 -2834598 + AT_rich Low_complexity Low_complexity 1 35 0 1966 133 26 13 chr21 42073114 42073422 -2834148 - AluSx SINE Alu 0 312 1 2107 97 3 29 chr21 42073422 42073730 -2833840 - AluSg1 SINE Alu -7 302 1 452 363 60 45 chr21 42073731 42074062 -2833508 - L1MC4a LINE L1 -1861 5930 5595 1856 143 13 25 chr21 42074214 42074529 -2833041 + AluJo SINE Alu 1 311 -1 297 224 22 71 chr21 42075131 42075314 -2832256 + (CCCCG)n Simple_repeat Simple_repeat 5 178 0 285 243 11 74 chr21 42075277 42075466 -2832104 + C-rich Low_complexity Low_complexity 2 178 0 * 24 0 0 0 chr21 42075488 42075512 -2832058 + GC_rich Low_complexity Low_complexity 1 24 0 271 232 12 77 chr21 42075534 42075702 -2831868 + G-rich Low_complexity Low_complexity 2 158 0 33 17 0 51 chr21 42075851 42075910 -2831660 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr21 42076063 42076095 -2831475 + GC_rich Low_complexity Low_complexity 1 32 0 242 233 41 0 chr21 42079973 42080046 -2827524 - LTR16B LTR ERVL -123 341 266 744 168 8 0 chr21 42080273 42080392 -2827178 - FLAM_A SINE Alu -13 120 1 1730 127 3 39 chr21 42080826 42081133 -2826437 + AluSx SINE Alu 9 305 0 330 320 25 0 chr21 42081326 42081448 -2826122 - Charlie8 DNA MER1_type -2200 217 93 452 301 61 75 chr21 42081927 42082193 -2825377 - L1MC4a LINE L1 -647 5500 5239 350 291 108 13 chr21 42082220 42082378 -2825192 - L1MC4a LINE L1 -919 5210 5038 563 300 78 36 chr21 42082515 42082567 -2825003 - L1MC4a LINE L1 -1717 4412 4364 2347 90 3 0 chr21 42082567 42082868 -2824702 - AluSx SINE Alu -10 302 1 563 300 78 36 chr21 42082868 42083175 -2824395 - L1MC4a LINE L1 -1765 4364 4038 313 300 18 65 chr21 42083269 42083439 -2824131 + L1M4 LINE L1 5354 5515 -659 1939 62 0 0 chr21 42083841 42084066 -2823504 - AluSx SINE Alu -87 225 1 358 283 103 61 chr21 42084067 42084425 -2823145 - L1MC4a LINE L1 -2760 3369 2973 2155 107 35 0 chr21 42084425 42084714 -2822856 - AluSx SINE Alu -13 299 1 358 283 103 61 chr21 42084714 42084978 -2822592 - L1MC4a LINE L1 -3156 2973 2721 * 731 233 74 117 chr21 42084955 42085235 -2822335 - L1MEd LINE L1 -4814 1496 1205 1042 197 92 72 chr21 42085235 42085370 -2822200 + MER2 DNA MER2_type 1 132 -212 1948 101 4 4 chr21 42085370 42085627 -2821943 - AluSg SINE Alu -13 297 41 1042 197 92 72 chr21 42085627 42085826 -2821744 + MER2 DNA MER2_type 132 342 -2 731 233 74 117 chr21 42085826 42086006 -2821564 - L1MEd LINE L1 -5105 1205 1019 2271 93 3 3 chr21 42086006 42086296 -2821274 - AluSx SINE Alu -22 290 1 731 233 74 117 chr21 42086296 42086339 -2821231 - L1MEd LINE L1 -5291 1019 976 703 131 62 39 chr21 42086339 42086469 -2821101 - FLAM_C SINE Alu 0 133 1 731 233 74 117 chr21 42086469 42086912 -2820658 - L1MEd LINE L1 -5334 976 547 1969 142 4 4 chr21 42087216 42087547 -2820023 - AluSx SINE Alu 0 331 1 2155 111 20 3 chr21 42087835 42088132 -2819438 - AluSp SINE Alu -11 302 1 351 326 106 9 chr21 42088861 42089079 -2818491 - L1ME LINE L1 -361 5760 5522 1932 156 3 28 chr21 42089108 42089428 -2818142 - AluSx SINE Alu 0 312 1 2194 131 7 0 chr21 42089464 42089762 -2817808 + AluSx SINE Alu 9 308 -4 928 183 31 43 chr21 42091878 42092052 -2815518 + MER33 DNA MER1_type 49 221 -2364 2340 99 0 3 chr21 42092052 42092345 -2815225 - AluSx SINE Alu -20 292 1 928 183 31 43 chr21 42092345 42092427 -2815143 + MER33 DNA MER1_type 221 302 -22 2231 135 3 0 chr21 42093970 42094282 -2813288 - AluSq SINE Alu 0 313 1 1051 90 0 15 chr21 42094284 42094418 -2813152 - AluSp SINE Alu -181 132 1 257 150 12 38 chr21 42094605 42094685 -2812885 + CT-rich Low_complexity Low_complexity 2 79 0 245 64 40 112 chr21 42095042 42095167 -2812403 + (GGCTG)n Simple_repeat Simple_repeat 4 119 0 2154 139 16 0 chr21 42095767 42096070 -2811500 - AluSx SINE Alu -2 310 3 248 88 0 0 chr21 42096589 42096623 -2810947 - L1MA2 LINE L1 -201 6103 6070 2144 128 7 0 chr21 42096651 42096940 -2810630 - AluSx SINE Alu -21 291 1 3231 109 64 0 chr21 42096940 42097455 -2810115 - L1MA3 LINE L1 -225 6080 5533 560 265 90 78 chr21 42097675 42098041 -2809529 + L1MC4 LINE L1 7601 7975 -67 1991 132 7 0 chr21 42098041 42098341 -2809229 - AluSx SINE Alu 0 302 1 560 265 90 78 chr21 42098341 42098384 -2809186 + L1MC4 LINE L1 7975 8016 -26 1851 192 3 0 chr21 42098421 42098728 -2808842 - AluJb SINE Alu -4 308 1 1070 77 0 0 chr21 42098804 42098947 -2808623 + L1PA11 LINE L1 6032 6174 0 289 241 121 21 chr21 42098955 42099096 -2808474 + L1M4 LINE L1 4283 4437 -1709 2214 126 0 0 chr21 42099097 42099391 -2808179 + AluSg SINE Alu 1 294 -16 292 337 66 42 chr21 42099460 42099748 -2807822 - L1MDa LINE L1 -1901 4481 4187 262 212 81 50 chr21 42099816 42099915 -2807655 - L1MDa LINE L1 -2299 4083 3982 13554 124 7 87 chr21 42099915 42100435 -2807135 - Tigger1 DNA MER2_type 0 2418 1858 1976 146 54 47 chr21 42100435 42100809 -2806761 + MSTA LTR MaLR 1 371 -57 1985 154 0 0 chr21 42100809 42101101 -2806469 - AluJb SINE Alu -20 292 1 2132 133 0 0 chr21 42101106 42101426 -2806144 - AluSx SINE Alu 0 320 1 1976 146 54 47 chr21 42101426 42101468 -2806102 + MSTA LTR MaLR 374 427 -1 13554 124 7 87 chr21 42101468 42101740 -2805830 - Tigger1 DNA MER2_type -560 1858 1566 2473 84 0 0 chr21 42101740 42102037 -2805533 + AluY SINE Alu 1 297 -14 13554 124 7 87 chr21 42102037 42102413 -2805157 - Tigger1 DNA MER2_type -852 1566 1162 2376 113 0 0 chr21 42102413 42102722 -2804848 + AluSq SINE Alu 1 309 -4 13554 124 7 87 chr21 42102722 42103205 -2804365 - Tigger1 DNA MER2_type -1256 1162 642 1467 221 0 20 chr21 42103205 42103499 -2804071 + AluJb SINE Alu 11 298 -14 13554 124 7 87 chr21 42103499 42104455 -2803115 - Tigger1 DNA MER2_type -1776 642 15 323 336 30 55 chr21 42104468 42104791 -2802779 - L1MDa LINE L1 -2410 3972 3675 845 227 11 51 chr21 42104791 42105122 -2802448 - L1MB8 LINE L1 0 6261 6003 417 306 67 64 chr21 42105258 42105481 -2802089 - L1MDa LINE L1 -2843 3539 3318 2169 123 0 13 chr21 42105481 42105797 -2801773 - AluSx SINE Alu 0 312 1 417 306 67 64 chr21 42105797 42105991 -2801579 - L1MDa LINE L1 -3064 3318 3126 2075 101 28 14 chr21 42105991 42106141 -2801429 - AluSx SINE Alu -21 291 134 2253 124 0 13 chr21 42106141 42106456 -2801114 - AluSx SINE Alu -1 311 1 2075 101 28 14 chr21 42106456 42106592 -2800978 - AluSx SINE Alu -178 134 1 417 306 67 64 chr21 42106592 42106873 -2800697 - L1MDa LINE L1 -3256 3126 2838 552 254 42 0 chr21 42106876 42106994 -2800576 + MER58A DNA MER1_type 2 124 0 793 283 26 6 chr21 42106994 42107340 -2800230 - L1MDa LINE L1 -3618 2764 2412 8360 83 142 6 chr21 42107340 42108544 -2799026 - SVA Other Other 0 1386 19 388 331 92 32 chr21 42108544 42108828 -2798742 - L1MDa LINE L1 -4076 2487 2187 2322 107 0 0 chr21 42108917 42109215 -2798355 - AluSx SINE Alu -14 298 1 835 154 23 0 chr21 42109274 42109404 -2798166 - AluJb SINE Alu -179 133 1 286 303 80 18 chr21 42109472 42109765 -2797805 - L1MDa LINE L1 -4614 1768 1562 * 454 259 53 0 chr21 42109763 42109894 -2797676 + L1ME3A LINE L1 5149 5286 -860 1134 277 176 46 chr21 42110674 42111408 -2796162 + L1MEc LINE L1 38 676 -5539 1650 166 12 72 chr21 42111408 42111740 -2795830 + AluJo SINE Alu 1 312 0 1134 277 176 46 chr21 42111740 42111889 -2795681 + L1MEc LINE L1 676 804 -5411 1794 151 42 7 chr21 42111889 42112173 -2795397 + AluJo SINE Alu 1 294 -18 1134 277 176 46 chr21 42112173 42112653 -2794917 + L1MEc LINE L1 804 1542 -4673 419 224 19 9 chr21 42112654 42112761 -2794809 + L1MB3 LINE L1 4925 5032 -1114 1808 175 47 15 chr21 42112761 42112793 -2794777 + L1MB3 LINE L1 5758 5788 -395 1203 158 96 71 chr21 42112793 42113105 -2794465 - MLT1A1 LTR MaLR 0 365 41 1896 168 0 7 chr21 42113105 42113397 -2794173 + AluJb SINE Alu 1 290 -22 1203 158 96 71 chr21 42113397 42113438 -2794132 - MLT1A1 LTR MaLR -324 41 3 1808 175 47 15 chr21 42113438 42113810 -2793760 + L1MB3 LINE L1 5788 6175 -8 399 56 0 0 chr21 42114444 42114498 -2793072 + (TG)n Simple_repeat Simple_repeat 2 55 0 2252 75 7 4 chr21 42115544 42115876 -2791694 - AluSc SINE Alu 0 333 1 549 314 44 41 chr21 42116775 42117094 -2790476 + L1ME3A LINE L1 5333 5652 -510 420 248 57 45 chr21 42117366 42117409 -2790161 + L1ME3A LINE L1 6007 6048 -122 1687 130 18 14 chr21 42117409 42117693 -2789877 - AluJo SINE Alu -1 311 27 420 248 57 45 chr21 42117693 42117806 -2789764 + L1ME3A LINE L1 6048 6165 -5 2592 57 0 0 chr21 42117826 42118127 -2789443 + AluY SINE Alu 3 303 -8 2526 69 0 3 chr21 42119681 42119984 -2787586 - AluY SINE Alu -9 302 1 328 224 50 99 chr21 42121293 42121454 -2786116 - L1ME4a LINE L1 0 6121 5969 240 314 44 29 chr21 42123025 42123229 -2784341 - L1 LINE L1 -2225 3921 3715 307 256 32 32 chr21 42123498 42123651 -2783919 - L1M4 LINE L1 -2284 3862 3710 820 225 65 94 chr21 42123654 42123704 -2783866 - Charlie1 DNA MER1_type 0 2761 2711 1985 119 47 4 chr21 42123704 42123982 -2783588 + AluJb SINE Alu 1 290 -22 820 225 65 94 chr21 42123982 42124027 -2783543 - Charlie1 DNA MER1_type -50 2711 2666 589 240 62 34 chr21 42124027 42124235 -2783335 + MER20 DNA MER1_type 3 216 -3 820 225 65 94 chr21 42124235 42124551 -2783019 - Charlie1 DNA MER1_type -95 2666 2361 753 306 97 98 chr21 42124677 42124917 -2782653 - L1M4 LINE L1 -2469 3677 3438 311 0 26 0 chr21 42124917 42124956 -2782614 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1615 148 38 4 chr21 42124965 42125228 -2782342 - AluJo SINE Alu -38 274 3 753 306 97 98 chr21 42125228 42125443 -2782127 - L1M4 LINE L1 -2716 3430 3216 2194 121 24 0 chr21 42125443 42125740 -2781830 - AluSx SINE Alu -8 304 1 753 306 97 98 chr21 42125740 42125794 -2781776 - L1M4 LINE L1 -2930 3216 3163 2393 92 7 0 chr21 42125794 42126100 -2781470 - AluSx SINE Alu -4 308 1 753 306 97 98 chr21 42126100 42127045 -2780525 - L1M4 LINE L1 -2983 3163 2205 1508 143 96 4 chr21 42127882 42128162 -2779408 - LTR36 LTR ERV1 0 611 306 343 272 12 0 chr21 42128165 42128334 -2779236 + (TTG)n Simple_repeat Simple_repeat 3 173 0 214 278 17 28 chr21 42128281 42128461 -2779109 + (TTGGGG)n Simple_repeat Simple_repeat 1 178 0 * 500 233 11 0 chr21 42128389 42128565 -2779005 + (TTG)n Simple_repeat Simple_repeat 3 180 0 1353 171 47 13 chr21 42128628 42128927 -2778643 - LTR36 LTR ERV1 -302 309 1 2032 125 35 0 chr21 42128977 42129265 -2778305 - AluSx SINE Alu -14 298 1 3522 129 49 6 chr21 42129555 42130182 -2777388 - L1PB2 LINE L1 0 6151 5498 651 170 0 0 chr21 42130183 42130289 -2777281 - U6 snRNA snRNA 0 107 2 328 172 8 25 chr21 42130596 42130718 -2776852 + (TG)n Simple_repeat Simple_repeat 1 120 0 2156 216 77 19 chr21 42130774 42131232 -2776338 + MER21B LTR ERV1 1 500 -363 2288 76 41 0 chr21 42131232 42131523 -2776047 + AluY SINE Alu 1 303 -8 2156 216 77 19 chr21 42131523 42131634 -2775936 + MER21B LTR ERV1 500 603 -260 904 201 63 0 chr21 42131651 42131840 -2775730 + MER21B LTR ERV1 410 610 -253 1193 250 139 10 chr21 42133758 42134174 -2773396 - MER21B LTR ERV1 -11 852 383 2231 62 10 39 chr21 42134405 42134713 -2772857 - AluY SINE Alu -12 299 1 296 177 21 94 chr21 42134754 42134850 -2772720 - MER21B LTR ERV1 -759 104 16 238 218 129 50 chr21 42135058 42135159 -2772411 - MLT1J LTR MaLR -207 304 196 343 231 66 0 chr21 42136422 42136513 -2771057 + Charlie5 DNA MER1_type 2483 2579 -33 723 107 76 61 chr21 42137028 42137066 -2770504 - FLAM_C SINE Alu -169 143 107 2103 110 0 58 chr21 42137066 42137394 -2770176 + AluSx SINE Alu 1 309 -3 723 107 76 61 chr21 42137394 42137486 -2770084 - FLAM_C SINE Alu -205 107 11 243 24 0 0 chr21 42137645 42137686 -2769884 - L1MA3 LINE L1 0 6305 6265 596 224 0 8 chr21 42138062 42138187 -2769383 + MIR SINE MIR 19 142 -120 396 0 0 0 chr21 42142311 42142355 -2765215 + (TG)n Simple_repeat Simple_repeat 2 45 0 3127 268 60 17 chr21 42142380 42143041 -2764529 - L1MA7 LINE L1 -1 6290 5566 2209 98 3 0 chr21 42143041 42143338 -2764232 - AluSx SINE Alu -14 298 1 3127 268 60 17 chr21 42143338 42143820 -2763750 - L1MA7 LINE L1 -725 5566 5106 195 358 98 0 chr21 42143894 42144017 -2763553 - MIR SINE MIR -15 247 113 394 159 54 35 chr21 42145125 42145445 -2762125 + (CACGT)n Simple_repeat Simple_repeat 1 326 0 216 250 36 0 chr21 42146497 42146553 -2761017 - MIR SINE MIR -56 152 95 902 169 36 0 chr21 42147943 42148109 -2759461 - FRAM SINE Alu -3 173 2 210 118 0 0 chr21 42148459 42148493 -2759077 + (TC)n Simple_repeat Simple_repeat 2 35 0 324 64 0 0 chr21 42148493 42148540 -2759030 + (CA)n Simple_repeat Simple_repeat 1 47 0 2003 68 115 4 chr21 42148703 42148982 -2758588 - AluSq SINE Alu -3 310 1 698 205 50 30 chr21 42149088 42149288 -2758282 - MLT1F1 LTR MaLR -1 566 363 817 133 0 0 chr21 42151831 42151951 -2755619 + AluJb SINE Alu 179 298 -14 2377 58 0 32 chr21 42153450 42153758 -2753812 - AluY SINE Alu -9 302 5 324 267 93 0 chr21 42153825 42153911 -2753659 - L2 LINE L2 -20 3252 3159 300 269 117 18 chr21 42156397 42156656 -2750914 - L1MCa LINE L1 -5786 325 5 2168 124 0 0 chr21 42156706 42157004 -2750566 + AluSx SINE Alu 1 298 -14 201 213 0 0 chr21 42157146 42157193 -2750377 + (TG)n Simple_repeat Simple_repeat 2 48 0 1590 94 166 43 chr21 42158067 42158344 -2749226 - AluSq SINE Alu -2 311 1 289 308 173 39 chr21 42158617 42158981 -2748589 - MLT1L LTR MaLR -196 419 7 21 36 0 0 chr21 42159116 42159144 -2748426 + AT_rich Low_complexity Low_complexity 1 28 0 557 339 53 33 chr21 42159336 42159581 -2747989 - L1M4 LINE L1 -1324 4822 4573 845 277 140 34 chr21 42159584 42160049 -2747521 - MLT1H LTR MaLR 0 549 36 330 353 52 0 chr21 42160070 42160186 -2747384 - L1M4 LINE L1 -1635 4511 4390 324 221 39 0 chr21 42160417 42160494 -2747076 + MLT1J1 LTR MaLR 242 321 -125 604 213 8 0 chr21 42162656 42162783 -2744787 - MLT1B LTR MaLR -215 175 48 313 314 72 14 chr21 42163354 42163561 -2744009 + L1MC4 LINE L1 7353 7571 -471 312 343 44 33 chr21 42163590 42163771 -2743799 + L1MC4a LINE L1 7534 7716 -92 820 249 57 62 chr21 42163813 42164219 -2743351 + Charlie2 DNA MER1_type 2355 2758 -104 838 210 10 26 chr21 42164225 42164420 -2743150 + AluJo SINE Alu 121 312 0 420 365 134 13 chr21 42165395 42165702 -2741868 + L1ME1 LINE L1 5669 6012 -154 1034 158 0 0 chr21 42165820 42165984 -2741586 - AluSq SINE Alu -16 297 134 1952 137 20 0 chr21 42166012 42166305 -2741265 + AluSx SINE Alu 1 299 -13 211 306 102 0 chr21 42166306 42166404 -2741166 - MER5A DNA MER1_type -56 133 26 489 347 54 4 chr21 42166675 42166908 -2740662 + MIR SINE MIR 4 252 -10 586 271 95 5 chr21 42166947 42167157 -2740413 - MLT1F LTR MaLR -1 541 313 382 284 74 17 chr21 42167234 42167410 -2740160 - MLT1F LTR MaLR -376 191 6 229 221 65 0 chr21 42168516 42168593 -2738977 - L1ME4a LINE L1 -72 6049 5968 336 229 47 18 chr21 42168622 42168881 -2738689 + (TG)n Simple_repeat Simple_repeat 1 266 0 284 70 39 93 chr21 42168915 42169044 -2738526 + (GTGTG)n Simple_repeat Simple_repeat 4 125 0 383 102 84 21 chr21 42169054 42169346 -2738224 + (TG)n Simple_repeat Simple_repeat 1 310 0 345 117 33 83 chr21 42169350 42169470 -2738100 + (GTGTG)n Simple_repeat Simple_repeat 1 114 0 309 102 78 30 chr21 42169472 42169639 -2737931 + (TG)n Simple_repeat Simple_repeat 1 175 0 364 93 76 35 chr21 42169703 42169875 -2737695 + (TG)n Simple_repeat Simple_repeat 1 179 0 340 314 136 66 chr21 42170732 42171203 -2736367 + L1MC4a LINE L1 5430 5933 -1875 2220 110 3 10 chr21 42171247 42171556 -2736014 + AluSx SINE Alu 1 307 -5 2493 55 0 6 chr21 42172379 42172690 -2734880 - AluY SINE Alu -2 309 1 309 289 62 0 chr21 42173126 42173254 -2734316 + L1MEd LINE L1 660 795 -5410 307 343 20 0 chr21 42173303 42173402 -2734168 + L1MEd LINE L1 981 1081 -5124 565 282 85 35 chr21 42173410 42173750 -2733820 + L1MEd LINE L1 984 1340 -4865 488 378 99 22 chr21 42173753 42173816 -2733754 + L1MEd LINE L1 1382 1439 -4957 2174 120 7 0 chr21 42173816 42174124 -2733446 + AluSx SINE Alu 1 310 -2 488 378 99 22 chr21 42174124 42174465 -2733105 + L1MEd LINE L1 1439 1817 -4579 1854 94 0 0 chr21 42174491 42174735 -2732835 + AluSq SINE Alu 1 244 -69 984 67 0 44 chr21 42174735 42174870 -2732700 - AluSq/x SINE Alu -170 143 15 1928 143 3 3 chr21 42175312 42175612 -2731958 - AluJb SINE Alu -7 305 6 316 294 204 24 chr21 42175768 42175979 -2731591 + MIR SINE MIR 14 262 0 1777 156 7 10 chr21 42175993 42176301 -2731269 - AluSx SINE Alu -5 307 1 223 258 0 72 chr21 42178548 42178715 -2728855 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 2180 107 0 3 chr21 42180047 42180073 -2727497 - AluSx SINE Alu -1 311 286 195 69 0 0 chr21 42180073 42180102 -2727468 + (TG)n Simple_repeat Simple_repeat 2 30 0 2180 107 0 3 chr21 42180102 42180375 -2727195 - AluSx SINE Alu -26 286 13 2166 108 3 0 chr21 42180397 42180694 -2726876 - AluSg SINE Alu -12 298 1 354 336 89 0 chr21 42181374 42181520 -2726050 + L1MEd LINE L1 2051 2209 -4187 2047 128 0 3 chr21 42182536 42182834 -2724736 - AluSx SINE Alu -15 297 1 307 214 39 58 chr21 42184268 42184371 -2723199 + Charlie7 DNA MER1_type 5 105 -2507 243 185 44 22 chr21 42184444 42184579 -2722991 + (TG)n Simple_repeat Simple_repeat 1 138 0 264 279 28 34 chr21 42184594 42184773 -2722797 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 * 392 218 67 12 chr21 42184701 42184866 -2722704 + (TG)n Simple_repeat Simple_repeat 1 174 0 308 186 53 27 chr21 42184883 42185153 -2722417 + (TG)n Simple_repeat Simple_repeat 1 277 0 227 311 22 22 chr21 42185375 42185555 -2722015 + (TG)n Simple_repeat Simple_repeat 1 180 0 408 251 17 17 chr21 42185584 42185759 -2721811 + (GTGTG)n Simple_repeat Simple_repeat 1 175 0 194 31 0 62 chr21 42186115 42186147 -2721423 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2067 138 3 0 chr21 42186456 42186753 -2720817 - AluSg SINE Alu -12 298 1 994 104 0 15 chr21 42186753 42186888 -2720682 - AluSg SINE Alu -177 133 1 523 229 42 117 chr21 42186890 42187130 -2720440 - LOR1-int LTR ERV1 -2374 4242 3668 2459 69 0 35 chr21 42187984 42188302 -2719268 + AluSc SINE Alu 1 307 -2 1861 147 6 35 chr21 42188647 42188997 -2718573 - AluJo SINE Alu 0 312 1 831 322 78 54 chr21 42189294 42189404 -2718166 + L1MEd LINE L1 3 109 -6010 2404 89 3 6 chr21 42189404 42189717 -2717853 + AluSx SINE Alu 1 312 0 831 322 78 54 chr21 42189717 42190143 -2717427 + L1MEd LINE L1 109 552 -5567 2410 90 17 0 chr21 42190389 42190690 -2716880 + AluSg SINE Alu 1 306 -4 288 296 20 10 chr21 42190889 42191008 -2716562 - MIR SINE MIR -62 146 34 227 314 29 0 chr21 42195685 42195755 -2711815 - L2 LINE L2 -90 3223 3152 2204 111 7 7 chr21 42198770 42199076 -2708494 - AluSp SINE Alu -7 306 1 228 244 0 0 chr21 42199396 42199441 -2708129 + (CA)n Simple_repeat Simple_repeat 1 45 0 190 286 12 48 chr21 42199843 42199927 -2707643 + MIR SINE MIR 73 153 -109 2688 58 0 0 chr21 42200153 42200461 -2707109 - AluY SINE Alu -3 308 1 861 138 8 0 chr21 42200488 42200618 -2706952 + FLAM_C SINE Alu 3 133 0 1325 154 18 48 chr21 42200633 42200860 -2706710 + AluJo SINE Alu 1 220 -92 277 159 0 0 chr21 42200860 42200904 -2706666 + AluJb SINE Alu 86 129 -173 266 120 20 0 chr21 42200904 42200911 -2706659 + (TA)n Simple_repeat Simple_repeat 1 6 -45 2133 129 3 0 chr21 42200911 42201205 -2706365 + AluSx SINE Alu 1 295 -17 266 120 20 0 chr21 42201205 42201247 -2706323 + (TA)n Simple_repeat Simple_repeat 6 51 0 277 289 0 0 chr21 42201247 42201337 -2706233 - L1MC4 LINE L1 -1339 6703 6614 273 214 71 0 chr21 42201269 42201353 -2706217 + L1MC4 LINE L1 6614 6703 -1339 * 180 0 0 0 chr21 42201353 42201373 -2706197 + (TA)n Simple_repeat Simple_repeat 2 21 0 710 222 0 0 chr21 42201373 42201499 -2706071 + AluSc SINE Alu 123 248 -61 1303 167 25 0 chr21 42201500 42201704 -2705866 + AluJo SINE Alu 86 294 -18 2276 89 10 10 chr21 42202887 42203191 -2704379 - AluSx SINE Alu -8 304 1 2528 58 0 0 chr21 42203302 42203596 -2703974 + AluY SINE Alu 1 294 -17 1754 186 6 10 chr21 42205308 42205442 -2702128 + AluJb SINE Alu 1 134 -178 2400 96 3 0 chr21 42205442 42205743 -2701827 + AluSp SINE Alu 1 302 -11 1754 186 6 10 chr21 42205743 42205919 -2701651 + AluJb SINE Alu 134 310 -2 516 76 0 0 chr21 42206484 42206550 -2701020 - AluS SINE Alu -236 77 12 483 215 25 14 chr21 42206568 42206709 -2700861 - L1M4 LINE L1 -3106 3742 3610 433 145 60 0 chr21 42206710 42206793 -2700777 - U6 snRNA snRNA 0 107 20 2682 114 7 36 chr21 42206793 42207231 -2700339 - LTR3b LTR ERVK 0 437 13 3215 192 20 45 chr21 42207310 42208036 -2699534 - L1M4 LINE L1 -3222 3626 2925 1682 189 0 7 chr21 42208036 42208322 -2699248 + AluJo SINE Alu 2 285 -27 3215 192 20 45 chr21 42208322 42208466 -2699104 - L1M4 LINE L1 -3923 2925 2779 2436 159 30 16 chr21 42208477 42208911 -2698659 - L1M4 LINE L1 -6348 501 62 2291 146 71 42 chr21 42208911 42209050 -2698520 - L1M2 LINE L1 -746 5400 5266 2209 123 0 16 chr21 42209050 42209076 -2698494 - AluSx SINE Alu 0 312 287 224 77 26 0 chr21 42209076 42209115 -2698455 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 123 0 16 chr21 42209115 42209405 -2698165 - AluSx SINE Alu -25 287 1 2291 146 71 42 chr21 42209405 42209789 -2697781 - L1M2 LINE L1 -880 5266 4887 1788 163 20 7 chr21 42210053 42210347 -2697223 - AluJo SINE Alu -14 298 1 2616 38 0 35 chr21 42212453 42212766 -2694804 + AluY SINE Alu 1 302 -9 2388 88 0 3 chr21 42213223 42213517 -2694053 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr21 42213517 42213547 -2694023 + AT_rich Low_complexity Low_complexity 1 30 0 870 213 12 0 chr21 42213745 42213914 -2693656 + FRAM SINE Alu 1 171 -5 2101 124 10 0 chr21 42214069 42214360 -2693210 - AluJb SINE Alu -18 294 1 550 258 8 0 chr21 42214432 42214556 -2693014 - L1PB4 LINE L1 -10 6146 6022 319 284 44 98 chr21 42214576 42214801 -2692769 - L1ME LINE L1 -294 5827 5615 2151 107 28 0 chr21 42214839 42215130 -2692440 + AluSx SINE Alu 1 299 -13 1724 151 25 4 chr21 42215279 42215557 -2692013 + AluSx SINE Alu 14 297 -15 2273 105 0 3 chr21 42215727 42216022 -2691548 + AluSx SINE Alu 1 294 -18 1778 231 55 23 chr21 42216022 42216356 -2691214 - L1MD1 LINE L1 -20 6222 5865 1822 168 3 3 chr21 42216356 42216654 -2690916 - AluJo SINE Alu -14 298 1 1778 231 55 23 chr21 42216654 42216833 -2690737 - L1MD1 LINE L1 -377 5865 5693 2332 92 10 3 chr21 42217506 42217812 -2689758 - AluSg SINE Alu -2 308 1 440 206 0 15 chr21 42217821 42217968 -2689602 - L1P5 LINE L1 -663 5488 5350 247 299 35 35 chr21 42217943 42218144 -2689426 - L1ME LINE L1 -4199 2626 2426 * 1611 164 29 11 chr21 42218353 42218628 -2688942 + AluJb SINE Alu 1 280 -32 1038 265 60 51 chr21 42218661 42219134 -2688436 - L1ME LINE L1 -4833 1709 1302 2303 114 0 0 chr21 42219134 42219433 -2688137 - AluSx SINE Alu -13 299 1 1038 265 60 51 chr21 42219433 42219679 -2687891 - L1ME LINE L1 -5240 1302 1060 827 217 43 10 chr21 42219875 42220082 -2687488 + MER58C DNA MER1_type 2 215 0 1804 169 7 3 chr21 42220149 42220444 -2687126 + AluJo SINE Alu 1 296 -16 2471 132 105 70 chr21 42220774 42220942 -2686628 + LTR24B LTR ERV1 8 169 -407 2820 149 67 2 chr21 42220942 42221437 -2686133 + MER1A DNA MER1_type 1 527 0 2471 132 105 70 chr21 42221437 42221813 -2685757 + LTR24B LTR ERV1 169 571 -5 1612 130 22 84 chr21 42221827 42222150 -2685420 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr21 42222601 42222623 -2684947 + GC_rich Low_complexity Low_complexity 1 22 0 32 95 0 0 chr21 42222772 42222867 -2684703 + GC_rich Low_complexity Low_complexity 1 95 0 184 235 20 20 chr21 42223494 42223545 -2684025 - MIR SINE MIR -119 143 93 219 271 0 17 chr21 42224066 42224125 -2683445 + T-rich Low_complexity Low_complexity 2 59 0 1886 111 3 102 chr21 42224772 42225116 -2682454 - AluSx SINE Alu -2 310 1 756 208 44 0 chr21 42225804 42225963 -2681607 - FRAM SINE Alu 0 166 1 2316 102 3 0 chr21 42225999 42226302 -2681268 - AluSx SINE Alu -8 304 1 2513 72 10 0 chr21 42227038 42227343 -2680227 - AluY SINE Alu -3 308 1 224 262 223 0 chr21 42227713 42227816 -2679754 + MIR SINE MIR 127 252 -10 1552 235 87 19 chr21 42227823 42228364 -2679206 - MER119 DNA MER1_type -1 582 5 180 111 0 0 chr21 42228527 42228554 -2679016 + (T)n Simple_repeat Simple_repeat 1 27 0 1235 181 5 23 chr21 42228591 42228807 -2678763 + AluJb SINE Alu 86 297 -15 2414 79 21 0 chr21 42228807 42229098 -2678472 + AluSc SINE Alu 1 297 -12 1799 159 28 3 chr21 42229453 42229736 -2677834 - AluJb SINE Alu -20 292 3 218 197 382 0 chr21 42229939 42230015 -2677555 + L2 LINE L2 2448 2552 -762 561 231 50 0 chr21 42230015 42230162 -2677408 - MLT1D LTR MaLR -343 162 1 2458 70 6 22 chr21 42230498 42230813 -2676757 - AluY SINE Alu -1 310 1 1210 139 12 0 chr21 42230875 42231048 -2676522 + FRAM SINE Alu 1 172 -4 189 306 37 28 chr21 42231210 42231318 -2676252 - MIR SINE MIR -64 144 36 464 251 133 15 chr21 42231621 42231816 -2675754 - L2 LINE L2 -1 3312 3095 432 224 87 22 chr21 42231836 42232019 -2675551 - L1MC5 LINE L1 -34 7927 7733 872 258 50 38 chr21 42232022 42232415 -2675155 + MLT1A2 LTR MaLR 1 365 -25 1339 122 0 0 chr21 42232484 42232664 -2674906 - AluSq SINE Alu 0 313 134 2259 78 0 90 chr21 42232665 42233000 -2674570 - AluSp SINE Alu -6 307 3 314 213 128 37 chr21 42233010 42233404 -2674166 - L1MC5 LINE L1 -311 7650 7157 2601 52 0 10 chr21 42233414 42233723 -2673847 - AluY SINE Alu -5 306 1 777 234 42 81 chr21 42233723 42234134 -2673436 - L1MC5 LINE L1 -931 7039 6695 1964 138 0 25 chr21 42234145 42234469 -2673101 - AluSx SINE Alu 0 322 6 781 182 42 0 chr21 42234644 42234809 -2672761 - MER5A DNA MER1_type -1 188 17 408 275 214 56 chr21 42234924 42235353 -2672217 - L1MC4a LINE L1 -1432 6376 5880 251 250 38 0 chr21 42235398 42235478 -2672092 - L1MC4a LINE L1 -2010 5798 5716 540 0 0 0 chr21 42236210 42236270 -2671300 + (TG)n Simple_repeat Simple_repeat 2 61 0 245 328 108 56 chr21 42237086 42237409 -2670161 - L3 LINE CR1 -1 1576 1237 337 336 28 0 chr21 42237913 42238020 -2669550 + MIR SINE MIR 23 132 -130 1461 148 134 7 chr21 42238140 42238417 -2669153 + MLT1A1 LTR MaLR 54 365 0 2343 78 0 0 chr21 42239473 42239782 -2667788 - AluY SINE Alu -2 309 1 347 228 65 0 chr21 42239985 42240077 -2667493 - MLT1B LTR MaLR 0 467 370 898 176 63 59 chr21 42240096 42240317 -2667253 - MLT1B LTR MaLR -168 222 1 2338 81 3 3 chr21 42240848 42241156 -2666414 - AluSp SINE Alu -5 308 1 504 312 45 9 chr21 42241268 42241489 -2666081 - MIR SINE MIR -28 234 6 255 353 50 10 chr21 42241846 42242047 -2665523 + MIR SINE MIR 48 256 -6 269 291 119 8 chr21 42242151 42242285 -2665285 + MIR SINE MIR 37 185 -77 2256 98 3 0 chr21 42242763 42243068 -2664502 - AluSx SINE Alu -4 308 3 1749 162 0 7 chr21 42243967 42244270 -2663300 + AluJo SINE Alu 1 301 -11 231 370 11 0 chr21 42244871 42244963 -2662607 + HAL1 LINE L1 598 690 -1817 1239 226 68 43 chr21 42245038 42245437 -2662133 + MLT1C LTR MaLR 59 467 0 1435 202 24 14 chr21 42245470 42245804 -2661766 + MSTD LTR MaLR 1 396 0 1844 127 38 3 chr21 42245902 42246194 -2661376 + AluSg SINE Alu 7 308 -2 440 312 126 57 chr21 42246206 42246555 -2661015 + L1M4c LINE L1 1029 1509 -4863 279 267 30 20 chr21 42249273 42249374 -2658196 - MER68 LTR ERV1 -237 325 224 748 296 230 16 chr21 42249707 42249973 -2657597 - L1MC4a LINE L1 -894 6914 6706 2240 91 3 0 chr21 42249973 42250269 -2657301 + AluSg SINE Alu 1 297 -13 748 296 230 16 chr21 42250269 42250445 -2657125 - L1MC4a LINE L1 -1102 6706 6377 1483 190 27 10 chr21 42250726 42251021 -2656549 - AluJb SINE Alu -7 305 6 1318 142 57 64 chr21 42251023 42251304 -2656266 - AluJb SINE Alu -33 279 1 353 306 107 40 chr21 42251311 42251762 -2655808 - L1MEc LINE L1 -2306 3909 3490 2098 97 17 0 chr21 42251762 42252060 -2655510 - AluSp SINE Alu -10 303 1 353 306 107 40 chr21 42252060 42252107 -2655463 - L1MEc LINE L1 -2725 3490 3448 1891 116 51 0 chr21 42252107 42252400 -2655170 - AluSx SINE Alu -4 308 1 353 306 107 40 chr21 42252400 42253213 -2654357 - L1MEc LINE L1 -2767 3448 2508 470 331 97 33 chr21 42253265 42253594 -2653976 - L1M4 LINE L1 -1042 5104 4755 2198 106 0 0 chr21 42253598 42253900 -2653670 - AluSg SINE Alu -8 302 1 961 235 136 12 chr21 42253988 42254457 -2653113 + MLT1G1 LTR MaLR 6 595 0 371 246 142 57 chr21 42254481 42254723 -2652847 - L1M4 LINE L1 -1539 4607 4361 1409 244 67 71 chr21 42254789 42255049 -2652521 - L1MEc LINE L1 -4313 2083 1823 2095 97 10 7 chr21 42255049 42255348 -2652222 - AluSq SINE Alu -7 306 7 1409 244 67 71 chr21 42255348 42255404 -2652166 - L1MEc LINE L1 -4573 1823 1768 1745 65 0 0 chr21 42255404 42255621 -2651949 - AluSg SINE Alu -93 217 1 1409 244 67 71 chr21 42255621 42255935 -2651635 - L1MEc LINE L1 -4628 1768 1453 2188 78 7 19 chr21 42255935 42256244 -2651326 - AluSg SINE Alu -5 305 1 1409 244 67 71 chr21 42256244 42256332 -2651238 - L1MEc LINE L1 -4943 1453 1366 2170 80 13 20 chr21 42256895 42257196 -2650374 - AluSp SINE Alu -14 299 1 1631 158 63 0 chr21 42257568 42257853 -2649717 - AluSx SINE Alu -9 303 1 312 27 0 0 chr21 42257918 42257955 -2649615 + (TG)n Simple_repeat Simple_repeat 1 37 0 752 234 106 82 chr21 42257964 42258871 -2648699 - L1MEc LINE L1 -5165 1231 125 2109 134 0 0 chr21 42258871 42259178 -2648392 - AluSx SINE Alu -1 311 5 752 234 106 82 chr21 42259178 42259266 -2648304 - L1MEc LINE L1 -6271 125 41 677 253 246 30 chr21 42259269 42259740 -2647830 - L1MC4 LINE L1 -985 7057 6485 1475 119 9 0 chr21 42260256 42260482 -2647088 - AluSg/x SINE Alu 0 312 85 2042 120 3 0 chr21 42261300 42261592 -2645978 - AluSx SINE Alu -19 293 1 248 271 57 41 chr21 42262294 42262416 -2645154 + MIR SINE MIR 12 136 -72 521 304 61 7 chr21 42263738 42264031 -2643539 - L1ME4a LINE L1 -225 5896 5588 192 268 0 0 chr21 42265148 42265189 -2642381 - L2 LINE L2 -95 3177 3137 1816 136 45 3 chr21 42265696 42265982 -2641588 + AluJo SINE Alu 1 298 -14 195 235 0 0 chr21 42266310 42266361 -2641209 + CT-rich Low_complexity Low_complexity 2 52 0 2187 305 68 13 chr21 42266404 42267382 -2640188 + L1MC4a LINE L1 6773 7803 -5 1458 185 70 42 chr21 42267393 42267677 -2639893 + L1MB3 LINE L1 5817 6114 -69 1838 128 51 3 chr21 42267677 42267973 -2639597 - AluSx SINE Alu -2 310 1 1458 185 70 42 chr21 42267973 42268045 -2639525 + L1MB3 LINE L1 6114 6183 0 624 268 176 31 chr21 42268383 42269305 -2638265 - L2 LINE L2 0 3313 1917 24 0 0 0 chr21 42269818 42269842 -2637728 + AT_rich Low_complexity Low_complexity 1 24 0 310 362 128 9 chr21 42270150 42270368 -2637202 - L1MC4 LINE L1 -1892 5916 5673 21 0 0 0 chr21 42270615 42270636 -2636934 + AT_rich Low_complexity Low_complexity 1 21 0 2063 70 33 37 chr21 42270664 42270964 -2636606 - AluY SINE Alu -12 299 1 2000 132 0 0 chr21 42270994 42271289 -2636281 - AluSx SINE Alu -17 295 1 333 68 0 0 chr21 42271292 42271336 -2636234 + (CA)n Simple_repeat Simple_repeat 2 45 0 2094 97 0 3 chr21 42271336 42271490 -2636080 - AluSc SINE Alu -21 288 135 222 60 40 20 chr21 42271490 42271540 -2636030 + (TTTAA)n Simple_repeat Simple_repeat 3 53 0 2197 46 18 11 chr21 42271540 42271822 -2635748 - AluY SINE Alu -27 284 1 2094 97 0 3 chr21 42271822 42271955 -2635615 - AluSc SINE Alu -172 137 1 24 67 0 0 chr21 42271957 42272002 -2635568 + AT_rich Low_complexity Low_complexity 1 45 0 682 252 144 44 chr21 42272623 42272964 -2634606 - L2 LINE L2 -1 3312 2938 345 24 0 0 chr21 42274692 42274734 -2632836 + (TG)n Simple_repeat Simple_repeat 1 42 0 716 143 16 24 chr21 42276252 42276378 -2631192 - AluJo SINE Alu -177 135 11 299 289 234 13 chr21 42277061 42277300 -2630270 - L1MC/D LINE L1 -2017 5791 5500 183 169 169 51 chr21 42277937 42277996 -2629574 - L2 LINE L2 -6 3266 3201 2220 92 3 0 chr21 42278228 42278523 -2629047 + AluSg SINE Alu 1 296 -14 460 307 31 0 chr21 42278525 42278652 -2628918 - L2 LINE L2 0 3313 3183 1747 161 27 3 chr21 42278991 42279290 -2628280 - AluSx SINE Alu -6 306 1 818 300 88 40 chr21 42279334 42280285 -2627285 + L1ME3A LINE L1 4911 5907 -263 769 87 0 0 chr21 42280285 42280388 -2627182 - AluSg/x SINE Alu -15 295 193 1228 244 90 17 chr21 42281332 42281734 -2625836 + L1ME3 LINE L1 5703 6133 -29 189 0 0 0 chr21 42282853 42282874 -2624696 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2152 84 0 0 chr21 42282877 42283152 -2624418 - AluSp SINE Alu -38 275 1 299 229 14 39 chr21 42283747 42283879 -2623691 - HsTC2 DNA Tc2 -34 1864 18 285 302 96 47 chr21 42283918 42284219 -2623351 - L1MC5 LINE L1 -30 7931 7616 24 53 0 0 chr21 42284365 42284403 -2623167 + AT_rich Low_complexity Low_complexity 1 38 0 1708 143 0 0 chr21 42285876 42286135 -2621435 - AluJo SINE Alu -14 298 40 2289 78 10 0 chr21 42286156 42286451 -2621119 + AluSp SINE Alu 1 298 -15 1933 125 17 3 chr21 42287695 42287983 -2619587 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr21 42288393 42288414 -2619156 + AT_rich Low_complexity Low_complexity 1 21 0 218 346 154 7 chr21 42288937 42289073 -2618497 - MIR3 SINE MIR -26 182 27 947 160 0 19 chr21 42289187 42289343 -2618227 + FRAM SINE Alu 3 155 -11 213 346 53 38 chr21 42289509 42289642 -2617928 + MIR SINE MIR 23 157 -105 225 284 152 37 chr21 42290706 42290915 -2616655 - L1MC4 LINE L1 -212 7830 7588 2087 131 0 3 chr21 42290915 42291227 -2616343 - AluSx SINE Alu -1 311 1 225 284 152 37 chr21 42291227 42291260 -2616310 - L1MC4 LINE L1 -454 7588 7560 543 184 28 9 chr21 42291273 42291382 -2616188 - L1MB8 LINE L1 -5 6173 6063 1053 235 98 7 chr21 42291406 42291581 -2615989 - AluJb SINE Alu 0 302 91 1469 196 8 0 chr21 42291581 42291847 -2615723 - AluJo SINE Alu -44 268 1 1053 235 98 7 chr21 42291847 42291948 -2615622 - AluJb SINE Alu -211 91 1 1576 128 33 0 chr21 42292032 42292274 -2615296 + AluJb SINE Alu 40 289 -23 4099 199 93 11 chr21 42294914 42295712 -2611858 - MER21B LTR ERV1 0 863 1 861 174 64 106 chr21 42295828 42296110 -2611460 + AluJo SINE Alu 28 297 -15 306 358 33 20 chr21 42300415 42300566 -2607004 - L1MC5 LINE L1 -254 7707 7555 929 219 33 14 chr21 42300741 42300956 -2606614 - MER20 DNA MER1_type 0 219 1 2312 63 0 3 chr21 42301299 42301586 -2605984 + AluSg SINE Alu 1 286 -24 2321 100 0 0 chr21 42301817 42302126 -2605444 - AluSc SINE Alu 0 309 1 26 0 0 0 chr21 42303118 42303144 -2604426 + AT_rich Low_complexity Low_complexity 1 26 0 2051 136 0 9 chr21 42303169 42303485 -2604085 - AluSq SINE Alu 0 313 1 1823 154 17 0 chr21 42303569 42303862 -2603708 + AluJb SINE Alu 5 302 -10 2038 121 3 3 chr21 42303864 42304161 -2603409 + AluSx SINE Alu 1 297 -15 209 143 0 63 chr21 42305344 42305407 -2602163 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 30 0 0 0 chr21 42305410 42305440 -2602130 + AT_rich Low_complexity Low_complexity 1 30 0 995 151 13 0 chr21 42305444 42305603 -2601967 - AluJo/FRAM SINE Alu -18 294 134 2053 106 27 0 chr21 42305603 42305926 -2601644 - AluSp SINE Alu 0 313 1 2092 104 0 22 chr21 42305940 42306256 -2601314 - AluSg1 SINE Alu 0 309 1 1530 225 114 36 chr21 42306260 42307075 -2600495 - L1M4 LINE L1 -494 5690 4805 305 305 38 41 chr21 42307892 42308049 -2599521 + L1MC5 LINE L1 7632 7788 -254 2077 123 3 3 chr21 42308049 42308359 -2599211 - AluSx SINE Alu -2 310 1 305 305 38 41 chr21 42308359 42308519 -2599051 + L1MC5 LINE L1 7788 8037 -5 584 151 0 0 chr21 42308928 42309014 -2598556 - AluJ/FLAM SINE Alu -225 87 2 1849 215 65 17 chr21 42309014 42309489 -2598081 - Charlie1 DNA MER1_type -574 2187 1690 923 247 185 14 chr21 42309519 42309871 -2597699 + L1MD2 LINE L1 5724 6135 -224 333 280 166 13 chr21 42310244 42310401 -2597169 + L1MD3 LINE L1 7793 7973 -22 327 259 70 42 chr21 42310403 42310546 -2597024 - Charlie1 DNA MER1_type -1110 1651 1505 286 232 27 80 chr21 42310998 42311062 -2596508 - MIR SINE MIR 0 262 205 8130 135 29 23 chr21 42311062 42311262 -2596308 + HSMAR2 DNA Mariner 1 198 -1104 2143 89 7 0 chr21 42311262 42311569 -2596001 + AluSq SINE Alu 1 309 0 8130 135 29 23 chr21 42311569 42312660 -2594910 + HSMAR2 DNA Mariner 198 1301 -1 286 232 27 80 chr21 42312660 42312707 -2594863 - MIR SINE MIR -57 205 157 1754 97 115 0 chr21 42317079 42317358 -2590212 - AluSx SINE Alu -1 311 1 196 234 108 54 chr21 42318810 42318921 -2588649 + L2 LINE L2 2988 3104 -209 12574 146 35 19 chr21 42320006 42321004 -2586566 + Tigger1 DNA MER2_type 13 993 -1425 2062 148 0 0 chr21 42321004 42321315 -2586255 + AluSx SINE Alu 1 311 -1 12574 146 35 19 chr21 42321315 42322097 -2585473 + Tigger1 DNA MER2_type 993 1840 -578 2126 105 0 20 chr21 42322097 42322403 -2585167 - AluSq SINE Alu -13 300 1 12574 146 35 19 chr21 42322403 42322868 -2584702 + Tigger1 DNA MER2_type 1840 2296 -122 229 274 82 0 chr21 42323251 42323324 -2584246 - L1ME LINE L1 -478 5643 5565 2065 109 0 35 chr21 42323335 42323505 -2584065 - AluSg SINE Alu -9 301 145 2185 86 0 10 chr21 42323505 42323819 -2583751 - AluY SINE Alu 0 311 1 2065 109 0 35 chr21 42323819 42323960 -2583610 - AluSg SINE Alu -165 145 1 228 86 0 0 chr21 42326189 42326224 -2581346 + (GGA)n Simple_repeat Simple_repeat 1 35 0 210 250 18 0 chr21 42327085 42327141 -2580429 - L2 LINE L2 -18 3254 3198 191 284 32 84 chr21 42328558 42328653 -2578917 + MIR SINE MIR 86 175 -87 1613 169 14 3 chr21 42328701 42328991 -2578579 - AluJb SINE Alu -19 293 1 1633 171 16 16 chr21 42333048 42333357 -2574213 + AluJb SINE Alu 1 309 -3 858 255 115 18 chr21 42333682 42334118 -2573452 - L1M4 LINE L1 -496 5678 5183 271 267 22 0 chr21 42334121 42334211 -2573359 - L1M4 LINE L1 -985 5161 5070 1781 159 17 3 chr21 42334585 42334887 -2572683 - AluJo SINE Alu 0 312 7 1672 118 26 21 chr21 42335319 42335690 -2571880 - Charlie3 DNA MER1_type -1 2709 1 338 324 16 28 chr21 42337839 42338021 -2569549 + MER58A DNA MER1_type 1 180 -44 195 42 0 0 chr21 42338244 42338268 -2569302 + (A)n Simple_repeat Simple_repeat 1 24 0 2069 130 0 13 chr21 42339992 42340327 -2567243 - AluSx SINE Alu 0 312 1 2326 70 3 0 chr21 42343143 42343442 -2564128 + AluSp SINE Alu 3 302 -11 2082 114 44 0 chr21 42344646 42344944 -2562626 - AluSx SINE Alu -1 311 1 180 226 113 0 chr21 42345684 42345737 -2561833 + MIR SINE MIR 90 148 -60 1431 194 50 7 chr21 42348074 42348373 -2559197 - AluJo SINE Alu 0 312 1 1099 200 154 0 chr21 42349833 42350138 -2557432 - MER21A LTR ERV1 0 931 580 674 182 147 0 chr21 42350144 42350342 -2557228 - MER21A LTR ERV1 -667 264 38 1765 114 70 0 chr21 42352375 42352647 -2554923 - AluSq SINE Alu -22 291 1 240 116 23 0 chr21 42353174 42353217 -2554353 - MLT1G1 LTR MaLR -7 588 545 214 281 48 18 chr21 42358007 42358174 -2549396 + (CCCCAG)n Simple_repeat Simple_repeat 1 172 0 * 378 204 0 87 chr21 42358053 42358249 -2549321 + C-rich Low_complexity Low_complexity 1 179 0 186 330 85 51 chr21 42358648 42358942 -2548628 + L2 LINE L2 2869 3172 -100 4794 177 38 26 chr21 42359160 42360367 -2547203 - L1MC1 LINE L1 -1 6401 5180 186 43 0 0 chr21 42360385 42360408 -2547162 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 706 173 0 0 chr21 42360408 42360518 -2547052 - FLAM_C SINE Alu -31 112 3 892 264 78 0 chr21 42360526 42360859 -2546711 - L1MC1 LINE L1 -1050 5165 4807 389 226 128 0 chr21 42361529 42361631 -2545939 + L1M4 LINE L1 4404 4518 -1628 2305 195 130 33 chr21 42361637 42361783 -2545787 - L1MC1 LINE L1 -3879 2517 2387 1855 119 18 0 chr21 42361783 42362090 -2545480 - AluSx SINE Alu 0 312 1 2305 195 130 33 chr21 42362090 42362465 -2545105 - L1MC1 LINE L1 -4009 2387 2050 1739 140 72 0 chr21 42362465 42362744 -2544826 - AluJo SINE Alu -9 303 5 2305 195 130 33 chr21 42362744 42362898 -2544672 - L1MC1 LINE L1 -4346 2050 1912 1630 176 69 0 chr21 42362898 42363188 -2544382 + AluJo SINE Alu 1 310 -2 2305 195 130 33 chr21 42363188 42363599 -2543971 - L1MC1 LINE L1 -4484 1912 1399 227 203 78 16 chr21 42364140 42364204 -2543366 + MLT1H LTR MaLR 440 507 -42 1429 234 80 12 chr21 42364216 42364627 -2542943 - L1MB3 LINE L1 -301 5882 5444 198 302 0 63 chr21 42365447 42365510 -2542060 + MIR SINE MIR 45 103 -105 368 351 7 13 chr21 42365578 42365732 -2541838 + (CGTG)n Simple_repeat Simple_repeat 2 154 0 557 231 69 107 chr21 42366924 42367270 -2540300 - MLT1B LTR MaLR -52 338 6 741 272 120 0 chr21 42368178 42368520 -2539050 - MLT1B LTR MaLR -6 384 2 189 0 0 0 chr21 42368529 42368550 -2539020 + (TG)n Simple_repeat Simple_repeat 2 22 0 2037 124 13 3 chr21 42368797 42368980 -2538590 - AluSq SINE Alu -3 310 121 306 0 0 0 chr21 42368980 42369014 -2538556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2037 124 13 3 chr21 42369014 42369137 -2538433 - AluSq SINE Alu -192 121 1 235 150 33 33 chr21 42369146 42369206 -2538364 - L1MB3 LINE L1 0 6183 6124 194 202 258 0 chr21 42369418 42369507 -2538063 + MIR3 SINE MIR 47 158 -50 318 110 16 110 chr21 42370525 42370716 -2536854 + (CCCTG)n Simple_repeat Simple_repeat 3 175 0 303 108 0 124 chr21 42370788 42370974 -2536596 + (CCCTG)n Simple_repeat Simple_repeat 3 165 0 2429 87 0 0 chr21 42372356 42372668 -2534902 - AluSq SINE Alu -1 312 1 238 277 54 1 chr21 42373408 42373599 -2533971 + MER31B LTR ERV1 243 466 0 271 260 0 52 chr21 42374961 42375038 -2532532 + MLT1D LTR MaLR 84 156 -349 226 323 52 0 chr21 42375171 42375267 -2532303 + MLT1D LTR MaLR 405 505 0 397 338 20 0 chr21 42375519 42375667 -2531903 - MER5B DNA MER1_type -18 160 10 261 179 15 30 chr21 42378120 42378187 -2529383 - L1M3 LINE L1 -531 5652 5587 2254 102 0 0 chr21 42379090 42379395 -2528175 - AluSx SINE Alu -7 305 1 1297 209 4 0 chr21 42379933 42380187 -2527383 - AluJo SINE Alu -57 255 1 679 221 39 11 chr21 42380187 42380368 -2527202 - L1M3 LINE L1 -555 5616 5431 192 246 159 44 chr21 42381529 42381740 -2525830 + L2 LINE L2 2766 3001 -312 208 231 19 0 chr21 42381855 42381907 -2525663 + L2 LINE L2 3215 3267 -5 3911 132 29 19 chr21 42382452 42383081 -2524489 - MER41B LTR ERV1 0 635 1 216 369 15 15 chr21 42383483 42383613 -2523957 - MIR SINE MIR -126 136 7 861 141 0 22 chr21 42384214 42384349 -2523221 - FLAM_C SINE Alu -1 132 1 978 180 69 69 chr21 42384710 42384819 -2522751 - Ricksha DNA DNA -25 3229 3121 2287 69 7 0 chr21 42384819 42385130 -2522440 + AluY SINE Alu 1 313 0 978 180 69 69 chr21 42385130 42385324 -2522246 - Ricksha DNA DNA -132 3122 2925 267 243 27 0 chr21 42385334 42385408 -2522162 - Ricksha DNA DNA -1098 83 8 429 81 0 0 chr21 42385942 42386004 -2521566 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 2142 129 7 0 chr21 42386016 42386325 -2521245 - AluSx SINE Alu -1 311 1 419 258 210 36 chr21 42386932 42387261 -2520309 - MLT1C LTR MaLR -31 436 51 201 204 0 47 chr21 42387564 42387693 -2519877 + (CTGGGG)n Simple_repeat Simple_repeat 1 122 0 1863 267 65 18 chr21 42387905 42388522 -2519048 + L1MB5 LINE L1 5529 6174 0 603 241 110 61 chr21 42388575 42388960 -2518610 - MLT1E2 LTR MaLR -158 461 63 21 0 0 0 chr21 42389776 42389797 -2517773 + AT_rich Low_complexity Low_complexity 1 21 0 519 230 72 29 chr21 42390187 42390326 -2517244 + MLT1G1 LTR MaLR 439 588 -7 1927 130 14 7 chr21 42390329 42390622 -2516948 + AluSx SINE Alu 1 295 -17 406 281 65 0 chr21 42390836 42390981 -2516589 - MER63 DNA MER1_type -31 1657 27 223 143 0 0 chr21 42391415 42391450 -2516120 + MIR SINE MIR 113 147 -115 349 297 116 62 chr21 42392354 42392613 -2514957 - HAL1b LINE L1 -539 809 537 294 228 44 50 chr21 42394122 42394302 -2513268 + (CATCT)n Simple_repeat Simple_repeat 2 180 0 236 238 30 67 chr21 42394335 42394499 -2513071 + (CATCT)n Simple_repeat Simple_repeat 2 159 0 210 274 16 70 chr21 42394962 42395148 -2512422 + (CATCT)n Simple_repeat Simple_repeat 2 177 0 197 326 146 0 chr21 42396713 42396802 -2510768 + MIR SINE MIR 86 187 -75 2384 80 0 0 chr21 42397713 42398014 -2509556 - AluSx SINE Alu -6 306 6 257 349 106 23 chr21 42398057 42398220 -2509350 - L1M4 LINE L1 -2314 3832 3684 2156 105 3 0 chr21 42398220 42398514 -2509056 - AluSp SINE Alu -18 295 1 257 349 106 23 chr21 42398514 42398737 -2508833 - L1M4 LINE L1 -2462 3684 3414 1272 151 120 4 chr21 42399567 42399824 -2507746 + AluJb SINE Alu 34 316 0 2162 111 0 13 chr21 42399940 42400238 -2507332 + AluSx SINE Alu 1 294 -18 847 137 0 30 chr21 42400248 42400379 -2507191 + FLAM_C SINE Alu 1 127 -16 2035 140 17 0 chr21 42400390 42400690 -2506880 + AluSx SINE Alu 1 305 -7 879 277 69 0 chr21 42400692 42401010 -2506560 - L1 LINE L1 -877 5269 4930 953 108 0 0 chr21 42401794 42401942 -2505628 - L1P LINE L1 -4231 1915 1768 1804 151 79 19 chr21 42402130 42402448 -2505122 + MER1B DNA MER1_type 1 337 0 950 209 45 126 chr21 42403041 42403227 -2504343 - MER89 LTR ERV1 -90 469 270 2104 118 0 7 chr21 42403227 42403531 -2504039 + AluSx SINE Alu 1 302 -10 950 209 45 126 chr21 42403531 42403852 -2503718 - MER89 LTR ERV1 -289 270 3 584 204 80 0 chr21 42403852 42404013 -2503557 - Charlie2 DNA MER1_type -82 2780 2607 1709 159 3 21 chr21 42404017 42404306 -2503264 + AluJb SINE Alu 1 284 -28 932 204 164 13 chr21 42404413 42404731 -2502839 + MLT1D LTR MaLR 135 500 -5 705 200 36 0 chr21 42406440 42406605 -2500965 + MER20 DNA MER1_type 3 173 -46 439 304 112 47 chr21 42408339 42408453 -2499117 - HAL1 LINE L1 -197 2310 2205 2561 55 0 3 chr21 42408453 42408765 -2498805 - AluY SINE Alu 0 311 1 1959 133 3 3 chr21 42408769 42409062 -2498508 - AluSx SINE Alu -19 293 1 439 304 112 47 chr21 42409062 42409156 -2498414 - HAL1 LINE L1 -304 2203 2083 1364 209 54 0 chr21 42409156 42409472 -2498098 - MER65A LTR ERV1 0 445 113 2407 81 0 0 chr21 42409503 42409810 -2497760 + AluSq SINE Alu 2 308 -5 2606 167 50 2 chr21 42409850 42410365 -2497205 + LTR9B LTR ERV1 105 644 0 424 143 0 204 chr21 42410365 42410442 -2497128 - MER65B LTR ERV1 -414 117 82 1834 116 15 0 chr21 42410442 42410701 -2496869 - AluSg SINE Alu -47 263 1 424 143 0 204 chr21 42410701 42410770 -2496800 - MER65B LTR ERV1 -449 82 1 1826 228 23 13 chr21 42410770 42411240 -2496330 - MER65B-int LTR ERV1 0 4871 4397 1472 240 50 25 chr21 42411267 42411631 -2495939 - MER65B-int LTR ERV1 -855 4016 3640 849 104 0 76 chr21 42411631 42411775 -2495795 - FLAM_C SINE Alu 0 133 1 1472 240 50 25 chr21 42411775 42411814 -2495756 - MER65B-int LTR ERV1 -1231 3640 3603 269 104 146 0 chr21 42411825 42411873 -2495697 - MER31-int LTR ERV1 -940 5391 5337 280 144 0 70 chr21 42411891 42411962 -2495608 - MER31-int LTR ERV1 -852 5746 3899 2081 109 0 17 chr21 42411962 42412264 -2495306 - AluSq SINE Alu -16 297 1 310 248 41 20 chr21 42412285 42412383 -2495187 - MER31-int LTR ERV1 -1010 5588 3723 26 0 0 0 chr21 42412413 42412439 -2495131 + AT_rich Low_complexity Low_complexity 1 26 0 360 274 11 0 chr21 42412456 42412551 -2495019 + MLT1A2 LTR MaLR 276 371 -3 208 312 195 0 chr21 42413312 42413389 -2494181 + L2 LINE L2 3208 3299 -14 1262 117 174 133 chr21 42413846 42414283 -2493287 - LTR8A LTR ERV1 0 727 273 202 53 0 53 chr21 42415135 42415173 -2492397 + (AGGGGG)n Simple_repeat Simple_repeat 6 41 0 2186 83 3 10 chr21 42415503 42415803 -2491767 + AluSg1 SINE Alu 4 301 -8 452 194 29 0 chr21 42415915 42416018 -2491552 + LTR37A LTR ERV1 52 157 -269 604 255 68 116 chr21 42416023 42416155 -2491415 + MLT1C LTR MaLR 1 138 -329 2368 100 0 0 chr21 42416155 42416465 -2491105 - AluSq SINE Alu -1 312 3 604 255 68 116 chr21 42416465 42416806 -2490764 + MLT1C LTR MaLR 138 451 -16 476 211 28 21 chr21 42416950 42417092 -2490478 + LTR37A LTR ERV1 284 426 0 277 260 0 0 chr21 42418220 42418293 -2489277 + MER20 DNA MER1_type 1 73 -146 787 245 126 47 chr21 42420369 42420687 -2486883 - MER2 DNA MER2_type 0 344 2 818 167 8 0 chr21 42420695 42420827 -2486743 - FLAM_A SINE Alu 0 133 1 546 179 11 6 chr21 42421163 42421342 -2486228 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 786 148 0 7 chr21 42421376 42421641 -2485929 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 629 146 6 17 chr21 42421654 42421832 -2485738 + (TGGA)n Simple_repeat Simple_repeat 2 177 0 329 230 52 22 chr21 42422042 42422177 -2485393 + (TGAA)n Simple_repeat Simple_repeat 4 142 0 330 166 18 55 chr21 42422183 42422346 -2485224 + (TGAG)n Simple_repeat Simple_repeat 2 158 0 557 138 0 87 chr21 42422374 42422569 -2485001 + (TGAA)n Simple_repeat Simple_repeat 1 178 0 520 135 22 65 chr21 42422616 42422801 -2484769 + (TGAA)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr21 42422926 42422947 -2484623 + AT_rich Low_complexity Low_complexity 1 21 0 2195 92 0 0 chr21 42423360 42423663 -2483907 + AluSx SINE Alu 1 303 0 4196 116 14 33 chr21 42424267 42424513 -2483057 + MER41B LTR ERV1 1 250 -385 2303 60 0 17 chr21 42424513 42424811 -2482759 - AluY SINE Alu -18 293 1 1454 92 0 14 chr21 42424811 42425018 -2482552 - AluSg/x SINE Alu -12 298 95 4196 116 14 33 chr21 42425018 42425146 -2482424 + MER41B LTR ERV1 249 378 -257 1932 160 3 6 chr21 42425146 42425458 -2482112 + AluSx SINE Alu 1 311 -1 4196 116 14 33 chr21 42425458 42425726 -2481844 + MER41B LTR ERV1 378 633 -2 375 294 15 22 chr21 42425746 42425882 -2481688 - MER4D LTR ERV1 0 903 769 2829 202 13 50 chr21 42425997 42426154 -2481416 - MER4D LTR ERV1 -110 793 632 2275 94 0 0 chr21 42426154 42426452 -2481118 - AluSx SINE Alu -9 303 6 2829 202 13 50 chr21 42426452 42426973 -2480597 - MER4D LTR ERV1 -271 632 140 291 194 14 125 chr21 42426981 42427065 -2480505 - LTR38B LTR ERV1 0 610 547 2560 52 0 0 chr21 42427065 42427375 -2480195 + AluY SINE Alu 2 311 0 291 194 14 125 chr21 42427375 42427434 -2480136 - LTR38B LTR ERV1 -63 547 483 3667 145 55 3 chr21 42427554 42428230 -2479340 + MER50 LTR ERV1 1 711 -23 382 244 8 42 chr21 42428582 42428701 -2478869 - LTR38B LTR ERV1 -495 115 1 379 193 37 0 chr21 42428701 42428818 -2478752 - MER49 LTR ERV1 -770 133 1 558 108 0 0 chr21 42430155 42430238 -2477332 + (GGA)n Simple_repeat Simple_repeat 1 83 0 1536 84 25 199 chr21 42431180 42431537 -2476033 - AluSq SINE Alu -8 295 1 1994 121 28 0 chr21 42432019 42432308 -2475262 - AluSx SINE Alu -15 297 1 2493 61 3 0 chr21 42432318 42432628 -2474942 - AluY SINE Alu 0 311 1 1835 164 0 3 chr21 42432630 42432946 -2474624 - AluJo SINE Alu 0 312 1 1334 166 0 14 chr21 42433088 42433311 -2474259 - AluJb SINE Alu -7 305 86 23 0 0 0 chr21 42433313 42433336 -2474234 + AT_rich Low_complexity Low_complexity 1 23 0 2243 96 0 10 chr21 42434104 42434273 -2473297 - AluSg SINE Alu -10 300 134 2257 101 7 0 chr21 42434273 42434579 -2472991 - AluSp SINE Alu -5 308 1 2243 96 0 10 chr21 42434579 42434712 -2472858 - AluSg SINE Alu -176 134 1 195 100 0 0 chr21 42434755 42434785 -2472785 + (A)n Simple_repeat Simple_repeat 1 30 0 1924 122 49 0 chr21 42434812 42435100 -2472470 + AluSx SINE Alu 1 302 -10 354 346 6 0 chr21 42435936 42436165 -2471405 + G-rich Low_complexity Low_complexity 1 230 0 217 349 0 0 chr21 42436594 42436680 -2470890 - MIR3 SINE MIR -16 192 107 402 234 76 38 chr21 42436913 42437097 -2470473 - MER20 DNA MER1_type 0 219 29 2356 57 3 13 chr21 42441260 42441559 -2466011 - AluY SINE Alu -15 296 1 2349 82 0 7 chr21 42442130 42442433 -2465137 - AluY SINE Alu -10 301 1 2284 93 13 0 chr21 42442461 42442762 -2464808 + AluSp SINE Alu 1 305 -8 395 222 139 20 chr21 42442762 42442792 -2464778 - L1MB5 LINE L1 -11 6169 6144 1527 193 34 14 chr21 42442792 42443088 -2464482 - AluJo SINE Alu -10 302 1 395 222 139 20 chr21 42443088 42443107 -2464463 - L1MB5 LINE L1 -36 6144 6129 1999 135 7 0 chr21 42443107 42443410 -2464160 - AluSx SINE Alu -7 305 1 395 222 139 20 chr21 42443410 42443541 -2464029 - L1MB5 LINE L1 -51 6129 5990 1172 161 16 0 chr21 42443746 42443939 -2463631 + AluJo SINE Alu 5 200 -112 1090 295 61 14 chr21 42443955 42444399 -2463171 - L1MB5 LINE L1 -197 5977 5513 348 248 206 21 chr21 42444524 42444665 -2462905 - MER5B DNA MER1_type -4 174 8 372 299 48 0 chr21 42444868 42445015 -2462555 + MER45A DNA AcHobo 1 154 -24 1878 122 32 0 chr21 42446423 42446702 -2460868 + AluJo SINE Alu 5 292 -20 2320 80 13 0 chr21 42446708 42447007 -2460563 + AluSg SINE Alu 1 303 -7 2070 113 0 3 chr21 42448096 42448389 -2459181 - AluSx SINE Alu -19 293 2 180 0 0 0 chr21 42449250 42449270 -2458300 + (A)n Simple_repeat Simple_repeat 1 20 0 199 321 27 9 chr21 42449968 42450080 -2457490 + L2 LINE L2 2563 2676 -638 212 240 16 50 chr21 42450943 42451064 -2456506 + C-rich Low_complexity Low_complexity 3 119 0 23 33 0 0 chr21 42451394 42451424 -2456146 + GC_rich Low_complexity Low_complexity 1 30 0 208 143 0 0 chr21 42451840 42451875 -2455695 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 246 305 110 0 chr21 42453686 42453768 -2453802 + MIR SINE MIR 51 141 -121 1539 213 70 12 chr21 42454277 42454606 -2452964 - MER7A DNA MER2_type 0 346 1 320 310 0 0 chr21 42454606 42454706 -2452864 - MLT1D LTR MaLR 0 505 406 622 201 73 30 chr21 42454835 42454999 -2452571 - MLT1D LTR MaLR -314 191 21 1937 127 3 16 chr21 42455060 42455367 -2452203 + AluJo SINE Alu 1 303 -9 186 43 0 0 chr21 42457617 42457640 -2449930 + (TCC)n Simple_repeat Simple_repeat 2 24 0 276 364 6 0 chr21 42458797 42458970 -2448600 + (TG)n Simple_repeat Simple_repeat 1 174 0 2886 180 35 35 chr21 42459682 42460397 -2447173 + MER49 LTR ERV1 199 913 -10 219 195 27 34 chr21 42460759 42460908 -2446662 + (TG)n Simple_repeat Simple_repeat 1 148 0 341 296 24 48 chr21 42461743 42461910 -2445660 + L1MA10 LINE L1 6010 6334 0 498 264 115 6 chr21 42462332 42462506 -2445064 + MER4E LTR ERV1 1 193 -586 * 1259 189 21 107 chr21 42462488 42462674 -2444896 + MER4D LTR ERV1 547 747 -156 1510 136 124 8 chr21 42462674 42462932 -2444638 - AluJb SINE Alu -24 288 1 1259 189 21 107 chr21 42462932 42462995 -2444575 + MER4D LTR ERV1 747 814 -89 2287 53 0 3 chr21 42462995 42463324 -2444246 + AluY SINE Alu 2 329 0 1259 189 21 107 chr21 42463324 42463454 -2444116 + MER4D LTR ERV1 814 895 -8 2187 102 0 7 chr21 42463825 42464128 -2443442 + AluSx SINE Alu 1 301 -11 230 189 111 33 chr21 42464140 42464230 -2443340 + MER90 LTR ERV1 359 455 -159 2138 109 0 7 chr21 42465215 42465518 -2442052 - AluSx SINE Alu -11 301 1 1958 97 54 0 chr21 42465629 42465907 -2441663 + AluSx SINE Alu 1 293 -19 1719 71 9 5 chr21 42466810 42467034 -2440536 - AluSg/x SINE Alu -8 302 78 2137 109 10 0 chr21 42467488 42467791 -2439779 + AluSq SINE Alu 1 306 -7 2498 11 4 0 chr21 42467791 42468115 -2439455 + AluYa5 SINE Alu 1 325 0 1033 238 83 42 chr21 42468117 42468524 -2439046 - MLT1C LTR MaLR -36 431 8 539 216 0 0 chr21 42470161 42470286 -2437284 + L1MB8 LINE L1 4414 4538 -1608 1054 171 6 0 chr21 42470287 42470468 -2437102 + AluSg/x SINE Alu 130 311 -1 564 234 71 0 chr21 42470468 42470622 -2436948 + L1MB8 LINE L1 4535 4699 -1447 * 737 206 5 62 chr21 42470591 42470800 -2436770 + L1MB8 LINE L1 5933 6129 -49 1812 141 7 18 chr21 42470867 42471144 -2436426 - AluJb SINE Alu -34 278 5 25 31 0 0 chr21 42472339 42472371 -2435199 + GC_rich Low_complexity Low_complexity 1 32 0 243 216 0 88 chr21 42472498 42472623 -2434947 + G-rich Low_complexity Low_complexity 6 119 0 425 260 11 33 chr21 42472657 42472838 -2434732 + G-rich Low_complexity Low_complexity 3 179 0 369 272 18 64 chr21 42472858 42473270 -2434300 + G-rich Low_complexity Low_complexity 1 393 0 253 275 18 42 chr21 42473399 42473566 -2434004 + (GGGTG)n Simple_repeat Simple_repeat 3 165 0 409 300 146 35 chr21 42473943 42474230 -2433340 + L1MC3 LINE L1 7467 7785 0 2489 53 0 34 chr21 42474513 42474835 -2432735 - AluY SINE Alu 0 311 1 1723 99 110 58 chr21 42474837 42474978 -2432592 - AluSc SINE Alu -2 307 175 261 0 0 0 chr21 42474978 42475007 -2432563 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1888 112 22 0 chr21 42475011 42475278 -2432292 - AluSg SINE Alu -35 275 3 1723 99 110 58 chr21 42475278 42475423 -2432147 - AluSc SINE Alu -136 173 1 1240 86 145 68 chr21 42475425 42475568 -2432002 - AluSx SINE Alu -3 309 140 2070 106 0 3 chr21 42475568 42475851 -2431719 - AluSg SINE Alu -24 286 5 1240 86 145 68 chr21 42475851 42475941 -2431629 - AluSx SINE Alu -172 140 58 2227 100 10 0 chr21 42475970 42476279 -2431291 - AluSx SINE Alu 0 312 1 1947 69 102 4 chr21 42476854 42477128 -2430442 - AluY SINE Alu -10 301 1 568 300 40 4 chr21 42478215 42478442 -2429128 + MER90 LTR ERV1 30 264 -311 893 332 93 59 chr21 42478868 42479077 -2428493 - L1M4 LINE L1 -803 5343 5143 2081 113 0 17 chr21 42479077 42479379 -2428191 - AluSg SINE Alu -13 297 1 893 332 93 59 chr21 42479379 42479961 -2427609 - L1M4 LINE L1 -1003 5143 4525 2307 100 0 0 chr21 42479961 42480260 -2427310 + AluSq SINE Alu 1 299 -14 779 147 17 2 chr21 42480275 42480506 -2427064 + AluJo SINE Alu 8 299 -13 2339 80 13 10 chr21 42480539 42480851 -2426719 - AluSp SINE Alu 0 313 1 2364 86 0 3 chr21 42480851 42481154 -2426416 - AluSp SINE Alu -11 302 1 1782 147 42 0 chr21 42481188 42481474 -2426096 + AluSx SINE Alu 1 298 -14 2395 87 0 3 chr21 42481533 42481845 -2425725 - AluSx SINE Alu -1 311 1 424 352 100 18 chr21 42483842 42484183 -2423387 + L1M4 LINE L1 4622 4990 -1156 2179 93 7 7 chr21 42484186 42484486 -2423084 + AluSx SINE Alu 1 300 -12 1455 161 59 22 chr21 42484612 42484648 -2422922 - MER34B LTR ERV1 0 565 532 1950 125 14 0 chr21 42484648 42484959 -2422611 - AluSx SINE Alu 0 315 1 1455 161 59 22 chr21 42484959 42485243 -2422327 - MER34B LTR ERV1 -33 532 232 1800 146 58 48 chr21 42485244 42485622 -2421948 - MSTB LTR MaLR -1 425 44 533 138 0 0 chr21 42485736 42485823 -2421747 - MSTB LTR MaLR -339 87 1 521 194 46 0 chr21 42485823 42485931 -2421639 - MER34B LTR ERV1 -329 236 124 2730 234 57 34 chr21 42485931 42486630 -2420940 + L1M4 LINE L1 3877 4559 -1587 2201 99 7 0 chr21 42486630 42486922 -2420648 - AluSc SINE Alu -15 294 1 2730 234 57 34 chr21 42486922 42487032 -2420538 + L1M4 LINE L1 4559 4665 -1481 2164 113 23 0 chr21 42487032 42487332 -2420238 + AluSx SINE Alu 1 307 -5 2730 234 57 34 chr21 42487332 42487489 -2420081 + L1M4 LINE L1 4665 4866 -1280 4286 171 47 37 chr21 42487503 42487803 -2419767 - L1MB5 LINE L1 -17 6157 5861 2368 57 7 0 chr21 42487803 42488100 -2419470 - AluY SINE Alu -10 301 3 4286 171 47 37 chr21 42488100 42488460 -2419110 - L1MB5 LINE L1 -313 5861 5506 2415 68 13 0 chr21 42488460 42488767 -2418803 - AluY SINE Alu 0 311 1 4286 171 47 37 chr21 42488767 42489102 -2418468 - L1MB5 LINE L1 -668 5506 5153 2072 112 0 3 chr21 42489102 42489454 -2418116 - AluSq SINE Alu 0 351 1 4286 171 47 37 chr21 42489454 42489624 -2417946 - L1MB5 LINE L1 -1021 5153 4986 864 244 52 36 chr21 42489629 42489936 -2417634 + L1M4 LINE L1 4849 5160 -986 1010 114 14 123 chr21 42490479 42490690 -2416880 + AluSg/x SINE Alu 115 302 -8 1050 185 42 75 chr21 42490690 42490842 -2416728 - MLT1A1 LTR MaLR -66 299 161 2131 91 14 0 chr21 42490842 42491128 -2416442 - AluSx SINE Alu -22 290 1 1050 185 42 75 chr21 42491128 42491283 -2416287 - MLT1A1 LTR MaLR -204 161 2 2426 44 7 3 chr21 42491415 42491712 -2415858 + AluY SINE Alu 3 300 -11 223 122 73 0 chr21 42491985 42492026 -2415544 - MIR SINE MIR -56 152 109 390 349 48 26 chr21 42492490 42492679 -2414891 + MIR SINE MIR 51 243 -19 6229 93 12 3 chr21 42493250 42494098 -2413472 - LTR5 LTR ERVK 0 969 115 454 86 43 0 chr21 42494098 42494168 -2413402 - LTR5 LTR ERVK -896 73 1 347 228 11 33 chr21 42495625 42495717 -2411853 - MIR SINE MIR -114 148 59 182 335 52 29 chr21 42498180 42498353 -2409217 + L2 LINE L2 2932 3108 -164 753 241 201 25 chr21 42499480 42499833 -2407737 - MLT1C LTR MaLR 0 467 53 248 57 5 153 chr21 42504395 42504604 -2402966 + (CACCC)n Simple_repeat Simple_repeat 1 178 0 * 320 116 6 81 chr21 42504556 42504728 -2402842 + (CCCCCA)n Simple_repeat Simple_repeat 3 161 0 1357 120 0 0 chr21 42508355 42508546 -2399024 + AluSq SINE Alu 116 306 -7 3143 169 90 15 chr21 42508548 42509168 -2398402 - L1MB3 LINE L1 -23 6160 5483 2096 95 0 74 chr21 42509168 42509506 -2398064 - AluSq SINE Alu 0 313 1 3143 169 90 15 chr21 42509506 42509565 -2398005 - L1MB3 LINE L1 -700 5483 5430 288 0 0 0 chr21 42509588 42509620 -2397950 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 242 15 0 chr21 42509815 42509881 -2397689 - L1ME3A LINE L1 -26 6144 6078 203 105 53 0 chr21 42509969 42510007 -2397563 + GA-rich Low_complexity Low_complexity 3 42 0 191 39 19 77 chr21 42510386 42510438 -2397132 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 28 86 0 0 chr21 42510649 42510719 -2396851 + GC_rich Low_complexity Low_complexity 1 70 0 327 89 30 0 chr21 42511912 42511980 -2395590 + Alu SINE Alu 1 48 -255 242 208 52 78 chr21 42513119 42513196 -2394374 + MIR3 SINE MIR 108 182 -26 2259 89 3 3 chr21 42513341 42513643 -2393927 + AluSx SINE Alu 1 302 -10 1313 77 0 56 chr21 42513646 42513842 -2393728 + AluSg/x SINE Alu 126 310 0 246 284 14 0 chr21 42518260 42518334 -2389236 - MER34B LTR ERV1 -3 562 488 240 280 56 9 chr21 42518630 42518737 -2388833 - MER34B LTR ERV1 -443 122 11 380 225 0 0 chr21 42518753 42518833 -2388737 - LTR49 LTR ERV1 0 595 516 2274 99 0 0 chr21 42518950 42519252 -2388318 - AluSx SINE Alu -10 302 1 494 246 66 66 chr21 42519337 42519565 -2388005 - LTR48B LTR ERV1 -390 232 5 486 260 0 0 chr21 42521541 42521932 -2385638 + (CA)n Simple_repeat Simple_repeat 1 391 0 301 285 15 15 chr21 42526937 42527067 -2380503 + (TG)n Simple_repeat Simple_repeat 1 130 0 284 163 12 0 chr21 42527083 42527169 -2380401 + (TG)n Simple_repeat Simple_repeat 2 88 0 2002 97 14 11 chr21 42530847 42531125 -2376445 + AluSq SINE Alu 14 292 -21 270 365 52 4 chr21 42531503 42531736 -2375834 + MER33 DNA MER1_type 32 275 -49 206 244 26 13 chr21 42533723 42533801 -2373769 + GA-rich Low_complexity Low_complexity 2 80 0 220 200 0 0 chr21 42535838 42535878 -2371692 + (CTGGGG)n Simple_repeat Simple_repeat 6 45 0 553 269 34 0 chr21 42544982 42545149 -2362421 - MIR SINE MIR -57 151 12 2014 140 3 7 chr21 42547193 42547501 -2360069 + AluSx SINE Alu 2 308 -4 327 235 26 0 chr21 42549071 42549312 -2358258 + C-rich Low_complexity Low_complexity 1 247 0 307 227 32 0 chr21 42549325 42549479 -2358091 + C-rich Low_complexity Low_complexity 3 161 0 24 53 0 0 chr21 42549585 42549623 -2357947 + GC_rich Low_complexity Low_complexity 1 38 0 2051 172 112 27 chr21 42550253 42550457 -2357113 + LTR8A LTR ERV1 1 186 -541 3311 173 22 68 chr21 42550457 42551181 -2356389 + LTR8 LTR ERV1 1 691 0 2051 172 112 27 chr21 42551181 42551523 -2356047 + LTR8A LTR ERV1 186 593 -134 1283 81 0 5 chr21 42551547 42551732 -2355838 - MER4A LTR ERV1 0 664 481 2259 81 0 29 chr21 42551770 42551927 -2355643 + AluSq SINE Alu 1 146 -167 2791 95 95 5 chr21 42551927 42552338 -2355232 - LTR7 LTR ERV1 -2 448 1 2259 81 0 29 chr21 42552338 42552488 -2355082 + AluSq SINE Alu 146 299 -14 2779 96 26 62 chr21 42552488 42552988 -2354582 - MER4A LTR ERV1 -182 482 1 236 310 0 14 chr21 42553197 42553268 -2354302 + LTR38 LTR ERV1 125 194 -362 754 66 33 25 chr21 42553330 42553452 -2354118 + MER4E LTR ERV1 1 123 -656 4854 115 28 51 chr21 42553453 42553798 -2353772 - MER4E LTR ERV1 0 779 427 1963 46 0 46 chr21 42553798 42554057 -2353513 + AluY SINE Alu 2 248 -63 4854 115 28 51 chr21 42554057 42554491 -2353079 - MER4E LTR ERV1 -352 427 17 2403 70 0 3 chr21 42554491 42554793 -2352777 + AluY SINE Alu 1 301 -10 4854 115 28 51 chr21 42554793 42554810 -2352760 - MER4E LTR ERV1 -762 17 1 395 242 58 0 chr21 42555522 42555642 -2351928 - MLT1F1 LTR MaLR -5 562 436 217 286 16 0 chr21 42555763 42555826 -2351744 + GA-rich Low_complexity Low_complexity 4 67 0 313 200 31 0 chr21 42556484 42556549 -2351021 + MER58A DNA MER1_type 1 67 -40 1801 141 3 24 chr21 42556549 42556700 -2350870 - AluSx SINE Alu 0 307 154 2729 92 102 7 chr21 42556700 42557111 -2350459 + LTR7 LTR ERV1 1 450 0 1801 141 3 24 chr21 42557111 42557272 -2350298 - AluSx SINE Alu -153 154 1 1845 156 78 13 chr21 42557307 42557653 -2349917 - MSTA LTR MaLR 0 428 51 2188 91 7 0 chr21 42557653 42557940 -2349630 - AluSx SINE Alu -23 289 1 1845 156 78 13 chr21 42557940 42557990 -2349580 - MSTA LTR MaLR -377 51 6 449 268 21 14 chr21 42557995 42558014 -2349556 + MER58A DNA MER1_type 82 99 -2321 2094 175 73 19 chr21 42558014 42558425 -2349145 - Tigger2a DNA MER2_type -1 433 1 449 268 21 14 chr21 42558425 42558547 -2349023 + MER58A DNA MER1_type 99 224 0 252 235 5 102 chr21 42560624 42560820 -2346750 + G-rich Low_complexity Low_complexity 1 177 0 379 293 0 17 chr21 42560854 42561028 -2346542 + G-rich Low_complexity Low_complexity 6 176 0 185 0 40 0 chr21 42561527 42561552 -2346018 + (GGCTG)n Simple_repeat Simple_repeat 4 29 0 1906 151 0 3 chr21 42563263 42563568 -2344002 + AluSx SINE Alu 1 304 -8 265 325 30 91 chr21 42565812 42566043 -2341527 + L2 LINE L2 2963 3179 -93 871 139 22 99 chr21 42566211 42566434 -2341136 + MER2 DNA MER2_type 1 206 -139 461 18 0 0 chr21 42566453 42566509 -2341061 + AluY SINE Alu 1 56 -256 * 539 75 0 0 chr21 42566505 42566572 -2340998 - AluS SINE Alu -245 67 1 362 243 0 0 chr21 42566590 42566664 -2340906 + MER2 DNA MER2_type 268 341 -4 1097 109 6 0 chr21 42566747 42566922 -2340648 - MER41B LTR ERV1 0 635 460 805 99 0 0 chr21 42566922 42567033 -2340537 - AluSx SINE Alu -12 298 188 756 100 0 0 chr21 42567033 42567133 -2340437 - AluSx SINE Alu -213 100 1 2573 135 24 2 chr21 42567133 42567591 -2339979 - MER41B LTR ERV1 -167 468 1 296 301 147 7 chr21 42567761 42567897 -2339673 - MER68 LTR ERV1 -6 556 402 779 261 74 0 chr21 42567968 42568251 -2339319 - MER68 LTR ERV1 -258 304 1 266 273 82 18 chr21 42568614 42568724 -2338846 + MIR3 SINE MIR 45 161 -47 628 100 9 10 chr21 42569157 42569271 -2338299 - LTR12 LTR ERV1 0 714 301 253 286 10 0 chr21 42569272 42569370 -2338200 - LTR30 LTR ERV1 -80 642 544 1047 94 6 225 chr21 42569376 42569727 -2337843 - LTR12 LTR ERV1 -440 274 1 213 263 213 8 chr21 42569827 42569953 -2337617 - MIR SINE MIR -65 143 5 662 65 0 0 chr21 42569996 42570089 -2337481 - LTR12 LTR ERV1 -451 263 171 2125 132 0 7 chr21 42570090 42570112 -2337458 - AluSg SINE Alu -2 308 287 270 81 0 0 chr21 42570112 42570149 -2337421 + (TA)n Simple_repeat Simple_repeat 2 38 0 2125 132 0 7 chr21 42570149 42570436 -2337134 - AluSg SINE Alu -23 287 1 331 304 89 0 chr21 42570497 42570609 -2336961 + HAL1 LINE L1 1 122 -2385 1025 240 219 2 chr21 42570799 42570950 -2336620 - L1MD2 LINE L1 -10 6349 6232 2159 127 0 0 chr21 42570950 42571257 -2336313 - AluSx SINE Alu -5 307 1 1025 240 219 2 chr21 42571257 42571534 -2336036 - L1MD2 LINE L1 -127 6232 5828 1564 138 123 0 chr21 42571534 42571802 -2335768 - AluSx SINE Alu -10 302 2 2481 176 90 29 chr21 42571833 42572103 -2335467 - L1MDa LINE L1 -3863 2677 2425 1910 156 0 3 chr21 42572103 42572391 -2335179 - AluSx SINE Alu -17 295 9 2481 176 90 29 chr21 42572391 42572613 -2334957 - L1MDa LINE L1 -4115 2425 2218 2123 110 0 28 chr21 42572613 42572931 -2334639 + AluY SINE Alu 1 309 -2 2481 176 90 29 chr21 42572931 42573166 -2334404 - L1MDa LINE L1 -4322 2218 1907 1904 133 10 0 chr21 42573168 42573462 -2334108 - AluSg SINE Alu -13 297 1 2764 233 62 35 chr21 42573473 42574483 -2333087 - L1MDa LINE L1 -4815 1725 419 265 302 163 0 chr21 42575306 42575392 -2332178 + MER5A DNA MER1_type 71 170 -19 237 135 126 54 chr21 42576601 42576712 -2330858 + (CAGGA)n Simple_repeat Simple_repeat 1 119 0 * 278 284 0 25 chr21 42576634 42576715 -2330855 + G-rich Low_complexity Low_complexity 6 84 0 244 342 43 17 chr21 42577795 42577912 -2329658 - MIR SINE MIR -95 167 48 222 163 47 0 chr21 42578476 42578519 -2329051 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 1806 133 47 0 chr21 42578519 42578797 -2328773 - AluJb SINE Alu -21 291 1 2394 73 0 19 chr21 42578806 42579122 -2328448 - AluSx SINE Alu -2 310 1 204 258 0 74 chr21 42579887 42580077 -2327493 + (GGGTG)n Simple_repeat Simple_repeat 1 176 0 220 269 0 67 chr21 42580174 42580367 -2327203 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 213 296 36 0 chr21 42581161 42581226 -2326344 - MIR SINE MIR -63 145 85 424 268 79 20 chr21 42581383 42581654 -2325916 - MLT1D LTR MaLR -7 488 186 367 255 57 80 chr21 42581886 42582166 -2325404 - MLT1D LTR MaLR -190 277 5 300 250 14 57 chr21 42582170 42582241 -2325329 - MLT1D-int LTR MaLR 0 1371 1299 1763 141 44 4 chr21 42582241 42582511 -2325059 + AluSx SINE Alu 1 281 -31 198 71 0 0 chr21 42582511 42582539 -2325031 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 300 250 14 57 chr21 42582539 42582606 -2324964 - MLT1D-int LTR MaLR -70 1301 1238 1976 123 30 0 chr21 42582612 42582912 -2324658 + AluSx SINE Alu 1 309 -3 1642 269 44 66 chr21 42582915 42583568 -2324002 - MLT1D-int LTR MaLR -97 1274 635 2345 91 7 0 chr21 42583568 42583877 -2323693 - AluSx SINE Alu -1 311 1 1642 269 44 66 chr21 42583877 42583904 -2323666 - MLT1D-int LTR MaLR -736 635 609 2290 205 5 60 chr21 42584020 42584391 -2323179 - MLT1D-int LTR MaLR -772 599 209 2263 116 0 0 chr21 42584391 42584701 -2322869 - AluSx SINE Alu -2 310 1 2290 205 5 60 chr21 42584701 42584721 -2322849 - MLT1D-int LTR MaLR -1162 209 189 3495 133 11 26 chr21 42584721 42585256 -2322314 - MER1A DNA MER1_type 0 527 1 2290 205 5 60 chr21 42585256 42585318 -2322252 - MLT1D-int LTR MaLR -1182 189 125 1774 125 47 0 chr21 42585318 42585597 -2321973 - AluJb SINE Alu -17 295 4 2290 205 5 60 chr21 42585597 42585761 -2321809 - MLT1D-int LTR MaLR -1246 125 14 535 261 85 46 chr21 42585773 42586164 -2321406 - MLT1D LTR MaLR 0 467 5 686 187 149 0 chr21 42586801 42586935 -2320635 - FRAM SINE Alu -12 154 1 538 213 62 38 chr21 42587177 42587337 -2320233 - MER5A DNA MER1_type -21 168 5 254 145 0 97 chr21 42587353 42587415 -2320155 - MER5A DNA MER1_type -129 60 5 * 311 169 13 78 chr21 42587408 42587485 -2320085 - MER5A DNA MER1_type -113 76 5 431 352 10 10 chr21 42590580 42590779 -2316791 - MER90 LTR ERV1 -414 200 2 224 358 25 0 chr21 42591164 42591245 -2316325 + MIR SINE MIR 84 166 -96 771 112 35 18 chr21 42591770 42591940 -2315630 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 207 100 0 0 chr21 42591963 42591993 -2315577 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 2080 126 0 3 chr21 42592015 42592316 -2315254 + AluSx SINE Alu 1 300 -12 301 291 99 71 chr21 42592319 42592629 -2314941 + L1MD2 LINE L1 5949 6646 -154 631 166 0 14 chr21 42592640 42592785 -2314785 + (TAGA)n Simple_repeat Simple_repeat 1 143 0 1683 254 52 19 chr21 42593983 42594633 -2312937 + L1MB3 LINE L1 2718 3389 -2757 355 225 12 127 chr21 42594633 42594806 -2312764 - MSTD LTR MaLR 0 396 244 1096 159 16 68 chr21 42594835 42595087 -2312483 - MSTD LTR MaLR -157 239 1 7131 177 21 60 chr21 42595088 42596014 -2311556 + L1MB3 LINE L1 3386 4347 -1836 2247 144 21 21 chr21 42596014 42596388 -2311182 - THE1C LTR MaLR -1 374 1 7131 177 21 60 chr21 42596388 42596495 -2311075 + L1MB3 LINE L1 4347 4457 -1726 2048 82 6 82 chr21 42596495 42596814 -2310756 + AluY SINE Alu 2 296 -15 7131 177 21 60 chr21 42596814 42597298 -2310272 + L1MB3 LINE L1 4457 4959 -1224 1843 165 14 0 chr21 42597298 42597583 -2309987 + AluJb SINE Alu 1 289 -23 7131 177 21 60 chr21 42597583 42598937 -2308633 + L1MB3 LINE L1 4959 6133 -50 1464 165 48 67 chr21 42598937 42599253 -2308317 + AluJb SINE Alu 1 310 -2 7131 177 21 60 chr21 42599253 42599302 -2308268 + L1MB3 LINE L1 6133 6182 -1 2878 237 76 9 chr21 42599329 42600264 -2307306 - L1ME2 LINE L1 -9 6155 5125 2338 81 3 0 chr21 42600264 42600561 -2307009 - AluY SINE Alu -13 298 1 2878 237 76 9 chr21 42600561 42600758 -2306812 - L1ME2 LINE L1 -1039 5125 4942 21 0 0 0 chr21 42601867 42601888 -2305682 + GC_rich Low_complexity Low_complexity 1 21 0 1319 206 56 64 chr21 42602131 42602344 -2305226 - MLT1B LTR MaLR 0 390 177 1752 148 13 7 chr21 42602344 42602648 -2304922 - AluJb SINE Alu -1 311 6 1730 163 0 27 chr21 42602655 42602956 -2304614 - AluJb SINE Alu -19 293 1 1319 206 56 64 chr21 42602956 42603127 -2304443 - MLT1B LTR MaLR -219 171 1 955 388 42 17 chr21 42603610 42604200 -2303370 - L1ME2 LINE L1 -2167 3979 3375 2032 120 17 3 chr21 42604260 42604559 -2303011 - AluSq SINE Alu -10 303 1 2319 88 0 0 chr21 42604704 42605009 -2302561 - AluY SINE Alu -6 305 1 363 316 40 20 chr21 42605622 42605774 -2301796 - MER5A DNA MER1_type -11 178 24 460 210 21 29 chr21 42606056 42606605 -2300965 + (GAGTG)n Simple_repeat Simple_repeat 1 544 0 193 231 12 0 chr21 42606607 42606780 -2300790 + (GTGTG)n Simple_repeat Simple_repeat 5 179 0 471 237 27 0 chr21 42606806 42607142 -2300428 + (GAGTG)n Simple_repeat Simple_repeat 1 345 0 256 218 11 0 chr21 42607144 42607318 -2300252 + (GTGTG)n Simple_repeat Simple_repeat 5 180 0 2224 92 3 3 chr21 42607433 42607727 -2299843 - AluSg SINE Alu -16 294 1 1115 172 22 70 chr21 42608435 42608597 -2298973 - LTR8 LTR ERV1 0 691 546 2200 106 3 0 chr21 42608597 42608889 -2298681 - AluSq SINE Alu -18 295 3 1115 172 22 70 chr21 42608889 42608999 -2298571 - LTR8 LTR ERV1 -145 546 432 1567 208 19 67 chr21 42609017 42609497 -2298073 - LTR8 LTR ERV1 -234 457 1 1318 256 93 6 chr21 42612617 42613109 -2294461 - MER77 LTR ERV1 -7 598 64 374 232 0 0 chr21 42613848 42613917 -2293653 + (CA)n Simple_repeat Simple_repeat 2 70 0 591 194 7 36 chr21 42613921 42614233 -2293337 + (CATA)n Simple_repeat Simple_repeat 1 302 0 649 225 6 6 chr21 42614243 42614421 -2293149 + (CA)n Simple_repeat Simple_repeat 1 178 0 317 206 0 68 chr21 42614447 42614520 -2293050 - L1MCa LINE L1 -4363 2063 1996 441 224 0 0 chr21 42614529 42614654 -2292916 + (CA)n Simple_repeat Simple_repeat 2 126 0 303 260 0 41 chr21 42614669 42614742 -2292828 - L1MCa LINE L1 -4362 2064 1995 255 239 28 9 chr21 42614748 42614857 -2292713 + (CATA)n Simple_repeat Simple_repeat 4 114 0 387 261 24 6 chr21 42614989 42615154 -2292416 + (ATGGTG)n Simple_repeat Simple_repeat 4 171 0 189 242 42 11 chr21 42615170 42615265 -2292305 + (ATGGTG)n Simple_repeat Simple_repeat 4 101 0 313 242 17 39 chr21 42615286 42615464 -2292106 + (ATGGTG)n Simple_repeat Simple_repeat 4 177 0 191 167 0 0 chr21 42616599 42616635 -2290935 + L2 LINE L2 3024 3059 -213 213 94 0 0 chr21 42617518 42617550 -2290020 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 1519 134 92 4 chr21 42617551 42617813 -2289757 - AluJb SINE Alu -24 288 4 225 0 0 0 chr21 42617841 42617866 -2289704 + (T)n Simple_repeat Simple_repeat 1 25 0 1967 207 89 116 chr21 42617866 42618355 -2289215 - L1MB7 LINE L1 -9 6175 5674 1968 106 53 3 chr21 42618355 42618637 -2288933 - AluSq SINE Alu -17 296 1 1967 207 89 116 chr21 42618637 42619045 -2288525 - L1MB7 LINE L1 -510 5674 5256 2327 86 0 0 chr21 42619045 42619346 -2288224 - AluSg SINE Alu -9 301 1 1967 207 89 116 chr21 42619346 42619889 -2287681 - L1MB7 LINE L1 -928 5256 4733 238 146 0 0 chr21 42619889 42619930 -2287640 - L1MB7 LINE L1 -1373 4773 4733 231 167 0 0 chr21 42619970 42620012 -2287558 - L1MB7 LINE L1 -1372 4774 4733 244 143 0 0 chr21 42620085 42620127 -2287443 - L1MB7 LINE L1 -1372 4774 4733 229 54 108 0 chr21 42620127 42620164 -2287406 - L1M4 LINE L1 -1373 4773 4733 249 143 0 0 chr21 42620204 42620246 -2287324 - L1MB7 LINE L1 -1372 4774 4733 240 143 0 0 chr21 42620401 42620443 -2287127 - L1MB7 LINE L1 -1372 4774 4733 266 119 0 0 chr21 42620483 42620525 -2287045 - L1MB7 LINE L1 -1372 4774 4733 238 146 0 0 chr21 42620525 42620566 -2287004 - L1MB7 LINE L1 -1373 4773 4733 231 167 0 0 chr21 42620606 42620648 -2286922 - L1MB7 LINE L1 -1372 4774 4733 276 95 0 0 chr21 42620721 42620763 -2286807 - L1MB7 LINE L1 -1372 4774 4733 240 53 105 0 chr21 42620762 42620800 -2286770 - L1MB7 LINE L1 -1372 4774 4733 * 249 143 0 0 chr21 42620840 42620882 -2286688 - L1M4 LINE L1 -1372 4774 4733 257 170 0 0 chr21 42620996 42621043 -2286527 - L1M4 LINE L1 -1372 4774 4728 262 145 0 81 chr21 42621058 42621120 -2286450 - L1M4 LINE L1 -1357 4789 4733 235 125 0 0 chr21 42621120 42621160 -2286410 - L1M4 LINE L1 -1373 4773 4734 266 119 0 0 chr21 42621160 42621202 -2286368 - L1M4 LINE L1 -1372 4774 4733 238 146 0 0 chr21 42621202 42621243 -2286327 - L1M4 LINE L1 -1373 4773 4733 242 191 0 0 chr21 42621283 42621330 -2286240 - L1M4 LINE L1 -1372 4774 4728 262 145 0 81 chr21 42621345 42621407 -2286163 - L1M4 LINE L1 -1357 4789 4733 238 146 0 0 chr21 42621407 42621448 -2286122 - L1M4 LINE L1 -1373 4773 4733 * 4807 235 30 17 chr21 42621447 42623032 -2284538 - L1M4 LINE L1 -1372 4774 3100 480 233 47 0 chr21 42623033 42623162 -2284408 - L1M4 LINE L1 -2075 4071 3937 298 248 37 18 chr21 42623141 42623250 -2284320 - L1M4 LINE L1 -3029 3117 3007 * 264 268 70 21 chr21 42623297 42623439 -2284131 - L1ME4a LINE L1 -7 6114 5966 2369 82 0 19 chr21 42623615 42623933 -2283637 - AluSq SINE Alu -1 312 1 577 236 22 21 chr21 42624920 42625103 -2282467 - LTR45 LTR ERV1 0 525 355 1132 246 172 0 chr21 42625612 42626043 -2281527 + MLT1D LTR MaLR 1 505 0 25 0 0 0 chr21 42628395 42628420 -2279150 + GC_rich Low_complexity Low_complexity 1 25 0 313 361 14 14 chr21 42629726 42629870 -2277700 + MIR SINE MIR 108 251 -11 236 162 0 0 chr21 42629903 42629940 -2277630 + (TGG)n Simple_repeat Simple_repeat 3 39 0 815 179 6 0 chr21 42629945 42630124 -2277446 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 * 939 174 0 0 chr21 42630101 42630389 -2277181 + (TGG)n Simple_repeat Simple_repeat 1 288 0 261 345 225 10 chr21 42630537 42630830 -2276740 + L2 LINE L2 2939 3294 -19 309 381 114 5 chr21 42631177 42631379 -2276191 - MIR SINE MIR -1 261 38 2327 85 0 0 chr21 42631428 42631721 -2275849 + AluSg SINE Alu 1 293 -17 1432 175 108 18 chr21 42631879 42632165 -2275405 + AluJo SINE Alu 1 312 0 699 147 133 35 chr21 42632167 42632310 -2275260 + AluJo/FRAM SINE Alu 129 285 -27 290 247 71 8 chr21 42636354 42636457 -2271113 - MIR SINE MIR -61 147 43 1264 292 83 37 chr21 42639357 42639665 -2267905 - L1M4 LINE L1 -1453 4693 4400 2329 107 3 0 chr21 42639665 42639975 -2267595 - AluSq SINE Alu 0 313 3 1264 292 83 37 chr21 42639975 42640804 -2266766 - L1M4 LINE L1 -1746 4400 3610 2831 13 0 0 chr21 42640804 42641119 -2266451 - AluYb8 SINE Alu -3 315 1 1264 292 83 37 chr21 42641119 42641695 -2265875 - L1M4 LINE L1 -2536 3610 3062 824 165 0 8 chr21 42641695 42641828 -2265742 - FLAM_C SINE Alu 0 133 2 1264 292 83 37 chr21 42641828 42641866 -2265704 - L1M4 LINE L1 -3084 3062 3027 1951 117 3 30 chr21 42641866 42642166 -2265404 - AluSg SINE Alu -18 292 1 1264 292 83 37 chr21 42642166 42642232 -2265338 - L1M4 LINE L1 -3119 3027 2790 392 53 13 40 chr21 42642316 42642391 -2265179 + (CCCTAA)n Simple_repeat Simple_repeat 4 76 0 207 314 29 0 chr21 42642443 42642513 -2265057 + L2 LINE L2 1481 1552 -1762 1452 195 122 0 chr21 42642513 42642883 -2264687 - MLT1C LTR MaLR 0 467 53 242 321 52 37 chr21 42642910 42643044 -2264526 + L2 LINE L2 1543 1678 -1636 248 371 15 8 chr21 42643057 42643189 -2264381 + L2 LINE L2 1821 1953 -1361 495 282 0 33 chr21 42644632 42644813 -2262757 + G-rich Low_complexity Low_complexity 5 179 0 233 297 69 0 chr21 42647160 42647261 -2260309 - L1ME LINE L1 -494 5627 5520 197 211 18 70 chr21 42647782 42647839 -2259731 - L2 LINE L2 -13 3259 3206 208 327 0 0 chr21 42647970 42648022 -2259548 + G-rich Low_complexity Low_complexity 97 148 0 209 282 64 55 chr21 42649742 42649852 -2257718 + MIR3 SINE MIR 79 189 -19 1814 162 10 3 chr21 42650107 42650410 -2257160 - AluJb SINE Alu -7 305 1 1933 91 116 0 chr21 42650445 42650720 -2256850 + AluSx SINE Alu 1 307 -5 600 230 190 0 chr21 42650720 42650946 -2256624 - L1MB5 LINE L1 -50 6124 5856 229 364 91 0 chr21 42653540 42653650 -2253920 - MER5A DNA MER1_type -7 182 63 255 278 41 0 chr21 42654251 42654348 -2253222 - L1MB3 LINE L1 -15 6168 6068 303 230 253 17 chr21 42655181 42655359 -2252211 + MLT1J LTR MaLR 252 471 -40 374 311 60 115 chr21 42655423 42655927 -2251643 + L1MEd LINE L1 1104 1579 -4951 218 280 86 11 chr21 42655942 42656035 -2251535 + L2 LINE L2 3155 3254 -18 2347 92 0 0 chr21 42656111 42656414 -2251156 + AluSq SINE Alu 1 303 -10 525 221 23 15 chr21 42656798 42656929 -2250641 - MLT1A2 LTR MaLR -6 368 237 889 181 33 74 chr21 42656935 42657033 -2250537 + L1MA9 LINE L1 6080 6180 -132 1609 133 57 66 chr21 42657033 42657334 -2250236 + AluSx SINE Alu 6 303 -9 302 109 234 16 chr21 42657338 42657402 -2250168 + MADE1 DNA Mariner 1 78 -2 889 181 33 74 chr21 42657402 42657541 -2250029 + L1MA9 LINE L1 6183 6312 0 492 360 66 40 chr21 42657704 42658286 -2249284 + L1MEd LINE L1 2244 2943 -3597 2042 137 0 7 chr21 42658348 42658654 -2248916 + AluSx SINE Alu 1 304 -8 258 333 80 4 chr21 42659635 42659860 -2247710 + L1MEd LINE L1 3387 3628 -2912 419 303 84 0 chr21 42661388 42661543 -2246027 + L1ME1 LINE L1 1832 1999 -4397 662 306 152 7 chr21 42661814 42662225 -2245345 - L1MD3 LINE L1 -170 7825 7178 641 220 190 14 chr21 42662221 42662508 -2245062 + L1ME1 LINE L1 2315 2635 -3580 * 1287 178 0 0 chr21 42662508 42662721 -2244849 - AluJb SINE Alu -19 293 81 1872 274 90 5 chr21 42662721 42663227 -2244343 + L1ME1 LINE L1 2629 3090 -3125 2192 114 0 9 chr21 42663227 42663542 -2244028 + AluSx SINE Alu 1 312 0 1872 274 90 5 chr21 42663542 42663901 -2243669 + L1ME1 LINE L1 3090 3568 -2647 628 207 101 24 chr21 42663881 42664089 -2243481 + L1ME1 LINE L1 3828 4051 -2164 * 1685 224 96 13 chr21 42664080 42665247 -2242323 + L1ME1 LINE L1 4956 6401 -2 203 224 0 45 chr21 42665520 42665587 -2241983 + C-rich Low_complexity Low_complexity 2 65 0 225 264 45 39 chr21 42665663 42665893 -2241677 + C-rich Low_complexity Low_complexity 1 231 0 26 74 0 0 chr21 42666198 42666252 -2241318 + GC_rich Low_complexity Low_complexity 1 54 0 250 422 17 17 chr21 42667936 42668109 -2239461 - MIR SINE MIR -83 179 7 1800 92 0 0 chr21 42668615 42668854 -2238716 - AluSx SINE Alu -73 239 1 225 196 0 0 chr21 42670533 42670589 -2236981 + C-rich Low_complexity Low_complexity 2 57 0 441 154 29 36 chr21 42671127 42671376 -2236194 + (CCCTAA)n Simple_repeat Simple_repeat 1 247 0 238 279 0 0 chr21 42672854 42672915 -2234655 - MER63 DNA MER1_type -308 753 693 368 245 101 75 chr21 42673904 42673952 -2233618 - L1MC5 LINE L1 -160 7801 7756 185 0 0 39 chr21 42673952 42673978 -2233592 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 368 245 101 75 chr21 42673978 42674117 -2233453 - L1MC5 LINE L1 -205 7756 7609 578 226 8 0 chr21 42675103 42675227 -2232343 + MLT1D LTR MaLR 2 126 -379 777 190 45 0 chr21 42675336 42675515 -2232055 + MLT1D LTR MaLR 314 500 -5 184 228 0 20 chr21 42675768 42675869 -2231701 + (CA)n Simple_repeat Simple_repeat 1 99 0 338 273 0 38 chr21 42675903 42676086 -2231484 + (CA)n Simple_repeat Simple_repeat 2 177 0 352 215 0 82 chr21 42676125 42676320 -2231250 + (CA)n Simple_repeat Simple_repeat 2 180 0 431 239 0 48 chr21 42676447 42676635 -2230935 + (CA)n Simple_repeat Simple_repeat 2 180 0 349 248 57 65 chr21 42676794 42676965 -2230605 - MIR SINE MIR -66 142 19 180 261 102 11 chr21 42677446 42677534 -2230036 - MIR SINE MIR -129 133 38 891 145 48 0 chr21 42678756 42678945 -2228625 - AluSg/x SINE Alu 0 328 133 25 31 0 0 chr21 42679248 42679280 -2228290 + AT_rich Low_complexity Low_complexity 1 32 0 801 167 28 94 chr21 42679294 42679474 -2228096 + AluSg/x SINE Alu 137 304 -8 240 35 0 0 chr21 42679474 42679503 -2228067 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 2511 43 0 3 chr21 42680756 42681058 -2226512 - AluY SINE Alu -10 301 1 1651 149 165 24 chr21 42681332 42681591 -2225979 - MSTA LTR MaLR 0 428 98 4829 115 32 35 chr21 42681591 42682372 -2225198 + MER4E LTR ERV1 1 779 0 1651 149 165 24 chr21 42682372 42682487 -2225083 - MSTA LTR MaLR -330 98 1 1547 207 20 3 chr21 42682905 42683209 -2224361 - AluJb SINE Alu -3 309 1 2379 90 3 0 chr21 42683649 42683961 -2223609 + AluSp SINE Alu 1 313 0 3209 163 12 12 chr21 42685597 42686187 -2221383 + MER50 LTR ERV1 122 711 -23 390 113 32 0 chr21 42686204 42686266 -2221304 + MER50-int LTR ERV1 1 64 -7141 * 1515 113 4 0 chr21 42686263 42686492 -2221078 + MER50-int LTR ERV1 1005 1234 -5971 1413 174 72 30 chr21 42686518 42686851 -2220719 + THE1C LTR MaLR 29 375 0 3324 145 24 40 chr21 42686851 42687873 -2219697 + MER50-int LTR ERV1 896 1409 -3471 706 128 50 28 chr21 42687867 42688008 -2219562 + HUERS-P1 LTR ERV1 4538 4681 -1582 * 738 214 166 48 chr21 42689262 42689487 -2218083 - MLT2D LTR ERVL 0 414 146 8095 68 4 19 chr21 42689487 42690509 -2217061 - LTR13 LTR ERVK 0 1007 1 738 214 166 48 chr21 42690509 42690573 -2216997 - MLT2D LTR ERVL -268 146 91 859 226 21 11 chr21 42690911 42691097 -2216473 + MER53 DNA DNA 1 188 -1 1239 176 69 29 chr21 42691580 42691886 -2215684 - THE1C LTR MaLR 0 375 58 243 200 86 0 chr21 42691878 42691948 -2215622 - THE1C LTR MaLR -242 133 58 * 243 200 86 0 chr21 42692002 42692072 -2215498 - THE1C LTR MaLR -242 133 58 254 186 43 0 chr21 42692115 42692185 -2215385 - THE1C LTR MaLR -231 144 72 246 153 51 0 chr21 42692188 42692247 -2215323 - THE1C LTR MaLR -242 133 72 258 186 86 0 chr21 42692250 42692320 -2215250 - THE1C LTR MaLR -242 133 58 431 156 28 83 chr21 42692436 42692545 -2215025 - THE1C LTR MaLR -242 133 31 302 309 12 0 chr21 42692861 42692942 -2214628 - MIR SINE MIR -64 144 63 1955 134 3 16 chr21 42693412 42693717 -2213853 + AluSx SINE Alu 6 306 -6 429 303 56 0 chr21 42694009 42694151 -2213419 - MIR3 SINE MIR -12 196 47 1224 162 47 10 chr21 42694896 42695192 -2212378 - MER101 LTR ERV1 -7 467 222 316 317 0 0 chr21 42695214 42695394 -2212176 + G-rich Low_complexity Low_complexity 1 180 0 983 201 29 0 chr21 42695400 42695609 -2211961 - MER101B LTR ERV1 -355 215 1 200 289 145 12 chr21 42695646 42695729 -2211841 + L2 LINE L2 3187 3280 -33 3636 123 97 83 chr21 42695774 42696548 -2211022 + LTR1 LTR ERV1 1 785 0 14618 126 55 39 chr21 42696647 42697154 -2210416 + HUERS-P2 LTR ERV1 241 738 -2350 7807 14 9 2 chr21 42697154 42698326 -2209244 - L1PA3 LINE L1 0 6155 4976 14618 126 55 39 chr21 42698326 42698878 -2208692 + HUERS-P2 LTR ERV1 738 1280 -1808 180 340 29 39 chr21 42698878 42698981 -2208589 + L2 LINE L2 9 110 -3204 14618 126 55 39 chr21 42698981 42700621 -2206949 + HUERS-P2 LTR ERV1 1280 3088 0 3834 109 56 119 chr21 42700664 42701502 -2206068 + LTR1 LTR ERV1 1 785 0 732 147 9 0 chr21 42701736 42701852 -2205718 - FLAM_C SINE Alu -26 117 1 1331 92 5 60 chr21 42701879 42702096 -2205474 - L1PA10 LINE L1 -4 6164 5960 204 311 131 31 chr21 42702607 42702749 -2204821 - MIR SINE MIR -65 197 36 3624 127 38 10 chr21 42702900 42703475 -2204095 + LTR10C LTR ERV1 1 591 0 910 250 115 3 chr21 42704038 42704334 -2203236 + LTR56 LTR ERV1 8 336 -109 262 238 36 12 chr21 42704398 42704482 -2203088 + LTR23 LTR ERV1 352 437 0 2031 118 27 0 chr21 42704695 42704991 -2202579 - AluSg SINE Alu -6 304 1 603 247 0 20 chr21 42705698 42705844 -2201726 + MIR SINE MIR 8 150 -112 248 340 0 75 chr21 42706317 42706423 -2201147 + MIR3 SINE MIR 109 206 -2 303 211 4 54 chr21 42707250 42707375 -2200195 + MER4A LTR ERV1 1 116 -349 553 267 28 30 chr21 42707657 42708019 -2199551 + MER4C LTR ERV1 149 462 -3 2353 164 88 14 chr21 42708253 42708686 -2198884 - MER4C LTR ERV1 0 465 1 210 260 0 120 chr21 42710471 42710571 -2196999 - MIR3 SINE MIR -42 166 79 21 57 0 0 chr21 42710916 42710951 -2196619 + AT_rich Low_complexity Low_complexity 1 35 0 376 333 133 72 chr21 42711108 42711538 -2196032 - L1M4 LINE L1 -809 5337 4882 1730 155 0 60 chr21 42711558 42711704 -2195866 + AluSx SINE Alu 1 119 -193 2271 86 0 7 chr21 42711704 42712005 -2195565 + AluY SINE Alu 1 299 -12 1730 155 0 60 chr21 42712005 42712175 -2195395 + AluSx SINE Alu 119 298 -14 491 349 67 58 chr21 42712182 42712543 -2195027 + L1 LINE L1 3505 3868 -2278 204 315 33 11 chr21 42715317 42715409 -2192161 - MIR3 SINE MIR -32 176 83 2204 92 0 0 chr21 42715466 42715769 -2191801 - AluSx SINE Alu 0 303 1 2443 202 24 20 chr21 42715774 42716270 -2191300 - L1MB3 LINE L1 -2 6181 5684 501 300 87 10 chr21 42717397 42717697 -2189873 + L1MB7 LINE L1 5794 6116 -68 335 254 58 46 chr21 42719811 42719984 -2187586 + G-rich Low_complexity Low_complexity 2 176 0 22 0 0 0 chr21 42721264 42721286 -2186284 + GC_rich Low_complexity Low_complexity 1 22 0 200 356 0 0 chr21 42721602 42721675 -2185895 + (CA)n Simple_repeat Simple_repeat 2 74 0 * 486 285 31 29 chr21 42721635 42722018 -2185552 + (CATG)n Simple_repeat Simple_repeat 1 383 0 350 250 58 0 chr21 42723380 42723500 -2184070 - MER53 DNA DNA -13 176 50 256 245 64 0 chr21 42726395 42726491 -2181079 + MIR SINE MIR 43 145 -63 259 323 131 35 chr21 42728376 42728689 -2178881 - HAL1 LINE L1 -1326 1181 839 306 309 64 0 chr21 42729104 42729214 -2178356 - L3 LINE CR1 -346 1231 1115 2345 83 0 10 chr21 42729408 42729721 -2177849 - AluY SINE Alu -1 310 1 301 363 132 5 chr21 42730113 42730303 -2177267 + MIR SINE MIR 38 251 -11 200 339 45 0 chr21 42730817 42730929 -2176641 + L2 LINE L2 3142 3258 -14 750 189 6 0 chr21 42733352 42733712 -2173858 + (CAGT)n Simple_repeat Simple_repeat 1 362 0 497 223 6 0 chr21 42733748 42733914 -2173656 + (CAGT)n Simple_repeat Simple_repeat 3 169 0 709 168 17 3 chr21 42733938 42734243 -2173327 + (CAGT)n Simple_repeat Simple_repeat 1 309 0 672 193 10 2 chr21 42734289 42734782 -2172788 + (CAGT)n Simple_repeat Simple_repeat 1 497 0 687 197 0 0 chr21 42734803 42734981 -2172589 + (CAGT)n Simple_repeat Simple_repeat 2 179 0 798 190 8 0 chr21 42735005 42735635 -2171935 + (CAGT)n Simple_repeat Simple_repeat 1 635 0 322 196 21 0 chr21 42735675 42735772 -2171798 + (CAGT)n Simple_repeat Simple_repeat 2 100 0 229 239 23 115 chr21 42736414 42736544 -2171026 + L1ME LINE L1 5583 5700 -421 232 230 35 124 chr21 42736953 42737066 -2170504 + L2 LINE L2 3197 3299 -14 899 151 0 22 chr21 42740639 42740958 -2166612 + (TCCA)n Simple_repeat Simple_repeat 1 311 0 305 275 211 39 chr21 42740966 42741297 -2166273 - L2 LINE L2 -3 3310 2923 536 222 113 64 chr21 42741673 42741987 -2165583 - MLT1C LTR MaLR -74 316 6 26 30 0 0 chr21 42743016 42743049 -2164521 + AT_rich Low_complexity Low_complexity 1 33 0 213 333 0 29 chr21 42744337 42744475 -2163095 + G-rich Low_complexity Low_complexity 4 137 0 364 183 33 44 chr21 42744546 42744785 -2162785 + (GGGTG)n Simple_repeat Simple_repeat 1 236 0 2167 199 79 13 chr21 42744971 42745657 -2161913 + L1MB3 LINE L1 5428 6173 -118 447 245 95 27 chr21 42745871 42746018 -2161552 + MER7A DNA MER2_type 23 177 -169 1716 82 5 0 chr21 42746027 42746234 -2161336 - AluSx SINE Alu -82 230 23 246 220 0 0 chr21 42746245 42746295 -2161275 - LOR1b LTR ERV1 -371 90 41 444 336 45 12 chr21 42746895 42747225 -2160345 + L1M4 LINE L1 3949 4289 -1857 502 287 147 59 chr21 42747651 42748094 -2159476 + L1M4 LINE L1 4573 5054 -1092 212 216 62 10 chr21 42750199 42750296 -2157274 + (CAGG)n Simple_repeat Simple_repeat 4 105 0 321 123 0 0 chr21 42750574 42750639 -2156931 + (TGAG)n Simple_repeat Simple_repeat 4 68 0 24 0 0 0 chr21 42751360 42751384 -2156186 + AT_rich Low_complexity Low_complexity 1 24 0 350 134 74 15 chr21 42751397 42751477 -2156093 - AluJ/FLAM SINE Alu -233 69 1 355 353 0 8 chr21 42751524 42751657 -2155913 + L2 LINE L2 3181 3312 -1 579 303 72 59 chr21 42752301 42752856 -2154714 + L1MEc LINE L1 787 1362 -5034 1628 198 16 3 chr21 42752856 42753164 -2154406 + AluJb SINE Alu 1 312 0 579 303 72 59 chr21 42753164 42753629 -2153941 + L1MEc LINE L1 1362 1820 -4576 379 330 71 22 chr21 42753646 42753828 -2153742 + L1MEc LINE L1 1893 2083 -4313 1125 244 75 42 chr21 42753866 42754301 -2153269 + MLT1C LTR MaLR 8 467 0 476 289 21 0 chr21 42754470 42754612 -2152958 - L1MC/D LINE L1 -883 5476 5332 670 269 14 5 chr21 42754625 42754837 -2152733 + L1ME1 LINE L1 5890 6103 -63 301 378 52 15 chr21 42754843 42754978 -2152592 + L1MEc LINE L1 3509 3648 -2567 2352 238 28 67 chr21 42755236 42755428 -2152142 + L1M4 LINE L1 2392 2590 -3556 2492 62 3 0 chr21 42755428 42755718 -2151852 + AluY SINE Alu 1 291 -20 2352 238 28 67 chr21 42755718 42756603 -2150967 + L1M4 LINE L1 2590 3427 -2719 3689 246 80 55 chr21 42756614 42756747 -2150823 - L1M4c LINE L1 -4592 2054 1926 2186 74 22 0 chr21 42756747 42757018 -2150552 - AluY SINE Alu -34 277 1 3689 246 80 55 chr21 42757018 42758815 -2148755 - L1M4c LINE L1 -4720 1926 90 278 231 76 27 chr21 42759162 42759272 -2148298 + L1MC/D LINE L1 5549 5661 -473 1849 197 170 7 chr21 42759310 42759751 -2147819 - LTR10D LTR ERV1 0 513 1 279 113 0 0 chr21 42761880 42761933 -2145637 + (TGAG)n Simple_repeat Simple_repeat 4 56 0 514 340 80 0 chr21 42763517 42763717 -2143853 - MIR SINE MIR -32 230 15 292 289 12 46 chr21 42764330 42764445 -2143125 + HAL1b LINE L1 527 636 -712 1488 189 42 25 chr21 42764445 42764804 -2142766 + MLT1A1 LTR MaLR 1 365 0 292 289 12 46 chr21 42764804 42764861 -2142709 + HAL1b LINE L1 636 693 -655 296 197 0 16 chr21 42765040 42765101 -2142469 + Charlie5 DNA MER1_type 21 80 -2532 * 540 240 48 0 chr21 42765091 42765237 -2142333 + Charlie5 DNA MER1_type 2472 2624 0 2141 136 3 0 chr21 42766487 42766795 -2140775 + AluSg SINE Alu 2 310 0 2219 102 3 7 chr21 42766801 42767095 -2140475 + AluSg SINE Alu 1 293 -17 386 339 80 8 chr21 42767330 42767581 -2139989 - Charlie4a DNA MER1_type -114 394 126 280 304 26 9 chr21 42767690 42767805 -2139765 + L1MEd LINE L1 962 1078 -5294 22 0 0 0 chr21 42767837 42767859 -2139711 + AT_rich Low_complexity Low_complexity 1 22 0 256 268 56 0 chr21 42768719 42768861 -2138709 + (CAGG)n Simple_repeat Simple_repeat 4 153 0 297 68 0 0 chr21 42769139 42769183 -2138387 + (TGAG)n Simple_repeat Simple_repeat 4 47 0 16084 111 3 0 chr21 42770417 42772865 -2134705 + L1P LINE L1 2180 4633 -1513 1390 288 34 6 chr21 42772863 42773484 -2134086 + L1MEd LINE L1 1331 2112 -4451 * 3241 265 27 35 chr21 42773513 42774058 -2133512 + L1MEc LINE L1 1733 2281 -3934 2583 208 72 5 chr21 42774058 42774670 -2132900 + MER82 DNA MER2_type 1 653 0 3241 265 27 35 chr21 42774670 42775683 -2131887 + L1MEc LINE L1 2281 3225 -2990 * 5585 207 106 30 chr21 42775675 42776320 -2131250 + L1MEc LINE L1 3630 4224 -2014 1702 148 111 4 chr21 42776320 42776590 -2130980 + AluSc SINE Alu 1 299 -10 5585 207 106 30 chr21 42776590 42777672 -2129898 + L1MEc LINE L1 4224 5495 -743 323 262 47 0 chr21 42777941 42778048 -2129522 - L3 LINE CR1 -57 1520 1409 216 308 0 0 chr21 42778512 42778577 -2128993 - MIR SINE MIR -91 171 107 763 284 160 9 chr21 42780992 42781619 -2125951 + L1MEd LINE L1 3266 4023 -2359 907 141 0 0 chr21 42781620 42781741 -2125829 - FLAM_C SINE Alu -22 121 1 1330 319 62 6 chr21 42781858 42782407 -2125163 + L1MD3 LINE L1 6670 7249 -746 454 317 91 0 chr21 42782479 42782687 -2124883 + L1MD3 LINE L1 7535 7761 -234 1526 192 94 25 chr21 42783052 42783226 -2124344 + MLT1C LTR MaLR 1 162 -305 468 0 0 0 chr21 42783226 42783278 -2124292 + (CA)n Simple_repeat Simple_repeat 2 53 0 1526 192 94 25 chr21 42783278 42783540 -2124030 + MLT1C LTR MaLR 162 467 0 2333 297 29 20 chr21 42787147 42787684 -2119886 + L1M4 LINE L1 2602 3133 -3013 2059 162 46 14 chr21 42787684 42788097 -2119473 - MSTB LTR MaLR 0 426 1 2333 297 29 20 chr21 42788097 42788234 -2119336 + L1M4 LINE L1 3133 3267 -2879 2263 99 73 14 chr21 42788234 42788578 -2118992 + THE1B LTR MaLR 1 364 0 2333 297 29 20 chr21 42788578 42788896 -2118674 + L1M4 LINE L1 3267 3604 -2542 224 215 65 9 chr21 42790661 42790768 -2116802 + (CAGG)n Simple_repeat Simple_repeat 4 116 0 321 82 0 0 chr21 42791010 42791059 -2116511 + (TGAG)n Simple_repeat Simple_repeat 4 52 0 253 249 94 106 chr21 42791638 42792052 -2115518 - HAL1 LINE L1 -776 1731 1323 1825 150 54 3 chr21 42793182 42793389 -2114181 - AluSx SINE Alu 0 352 122 186 43 0 0 chr21 42793389 42793412 -2114158 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1825 150 54 3 chr21 42793412 42793541 -2114029 - AluSx SINE Alu -230 122 1 249 339 66 16 chr21 42793678 42793935 -2113635 - L1M4 LINE L1 -1925 4221 3952 206 214 0 0 chr21 42793957 42793999 -2113571 + (TG)n Simple_repeat Simple_repeat 2 43 0 1172 168 86 41 chr21 42794118 42794409 -2113161 - L1MA9 LINE L1 0 6312 6009 2195 175 30 2 chr21 42794493 42794922 -2112648 - L1MA9 LINE L1 -314 5998 5558 186 43 0 0 chr21 42795001 42795024 -2112546 + (TC)n Simple_repeat Simple_repeat 1 23 0 556 353 56 34 chr21 42795032 42795446 -2112124 - L1M4 LINE L1 -2472 3674 3252 385 281 66 99 chr21 42795819 42796299 -2111271 - HAL1 LINE L1 -1187 1320 798 871 250 42 0 chr21 42796852 42797112 -2110458 - L1MB7 LINE L1 -1 6252 5982 7216 162 18 2 chr21 42797118 42799077 -2108493 + L1P5 LINE L1 3802 5795 -356 377 323 10 0 chr21 42799081 42799180 -2108390 + L1MC4 LINE L1 6604 6703 -1339 2357 111 0 8 chr21 42799183 42799560 -2108010 + L1PB1 LINE L1 5777 6150 -1 641 249 39 52 chr21 42799607 42799983 -2107587 - L1MB7 LINE L1 -302 5950 5624 2882 185 43 11 chr21 42803873 42804483 -2103087 + MER49 LTR ERV1 1 629 -294 1179 154 99 55 chr21 42804960 42805232 -2102338 + MER49 LTR ERV1 626 909 -14 2334 110 3 3 chr21 42805232 42805533 -2102037 - AluSx SINE Alu -11 301 1 183 170 0 0 chr21 42805610 42805657 -2101913 + CT-rich Low_complexity Low_complexity 2 48 0 1659 266 48 7 chr21 42805687 42806146 -2101424 + MER82 DNA MER2_type 7 484 -169 232 234 62 0 chr21 42806265 42806329 -2101241 - L1MC/D LINE L1 -1949 5859 5792 1756 231 133 11 chr21 42806337 42806865 -2100705 - MLT1E LTR MaLR 0 593 2 419 276 99 37 chr21 42807026 42807298 -2100272 - L1MB7 LINE L1 -2266 5611 5323 696 250 104 106 chr21 42807488 42807841 -2099729 - L1MB7 LINE L1 -3571 2644 2292 2335 110 10 0 chr21 42807841 42808151 -2099419 - AluSq SINE Alu 0 313 1 696 250 104 106 chr21 42808151 42808419 -2099151 - L1MB7 LINE L1 -3923 2292 2025 1949 234 26 18 chr21 42808419 42808927 -2098643 + LTR10D LTR ERV1 2 513 0 696 250 104 106 chr21 42808927 42809413 -2098157 - L1MB7 LINE L1 -4190 2025 1545 342 0 0 0 chr21 42809554 42809592 -2097978 + (TC)n Simple_repeat Simple_repeat 1 38 0 184 333 80 13 chr21 42809997 42810072 -2097498 + L2 LINE L2 3234 3313 0 282 56 0 0 chr21 42810985 42811021 -2096549 + (CTCA)n Simple_repeat Simple_repeat 2 37 0 1208 228 143 10 chr21 42812906 42813402 -2094168 + MER68 LTR ERV1 1 562 0 286 261 78 17 chr21 42814426 42814541 -2093029 + MLT1J2 LTR MaLR 42 163 -287 307 312 35 46 chr21 42814733 42814906 -2092664 + L1M3 LINE L1 5259 5429 -741 3050 167 16 0 chr21 42814952 42815497 -2092073 - L1 LINE L1 -1911 4235 3682 5089 187 21 5 chr21 42815520 42816576 -2090994 + L1MA7 LINE L1 4258 5330 -816 273 100 0 0 chr21 42816576 42816626 -2090944 + AluSc SINE Alu 250 299 0 4747 162 21 40 chr21 42816640 42817515 -2090055 + L1MA7 LINE L1 5318 6173 -118 2124 116 11 0 chr21 42817515 42817799 -2089771 - AluSc SINE Alu -1 308 22 4747 162 21 40 chr21 42817799 42817912 -2089658 + L1MA7 LINE L1 6173 6287 -4 327 314 82 0 chr21 42817906 42818100 -2089470 + L1ME3 LINE L1 4980 5189 -957 * 860 237 42 30 chr21 42818099 42818399 -2089171 + L1M3 LINE L1 5439 5761 -410 855 234 35 19 chr21 42818408 42818664 -2088906 + L1ME1 LINE L1 5902 6161 -5 633 306 5 56 chr21 42818730 42818946 -2088624 - MER63A DNA MER1_type 0 210 6 1287 287 116 19 chr21 42818959 42819690 -2087880 + L1ME3 LINE L1 5254 6055 -107 1926 251 82 22 chr21 42819693 42820469 -2087101 + HAL1 LINE L1 1552 2374 -133 8254 88 39 2 chr21 42820509 42821644 -2085926 + THE1A-int LTR MaLR 404 1580 0 2548 93 3 3 chr21 42821644 42821999 -2085571 + THE1A LTR MaLR 1 355 0 258 197 84 14 chr21 42823178 42823320 -2084250 + (CCTG)n Simple_repeat Simple_repeat 4 155 0 266 287 0 2 chr21 42825596 42825674 -2081896 + L1MC/D LINE L1 5688 5764 -402 208 139 0 0 chr21 42825992 42826028 -2081542 + (T)n Simple_repeat Simple_repeat 1 36 0 278 49 0 24 chr21 42827503 42827544 -2080026 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 3540 252 63 65 chr21 42828440 42828518 -2079052 + L1M4 LINE L1 5 82 -6564 1766 149 61 30 chr21 42828518 42828881 -2078689 + THE1C LTR MaLR 2 375 0 3540 252 63 65 chr21 42828881 42830850 -2076720 + L1M4 LINE L1 82 2089 -4557 2741 258 25 22 chr21 42830841 42831874 -2075696 - L1M4 LINE L1 -2719 3427 2392 * 298 345 14 0 chr21 42832124 42832269 -2075301 - L1MEc LINE L1 -2562 3653 3507 730 264 19 5 chr21 42832276 42832492 -2075078 - L1ME1 LINE L1 -58 6108 5890 521 275 21 1 chr21 42832500 42832686 -2074884 + L1MC/D LINE L1 5327 5516 -828 1448 255 50 24 chr21 42832827 42833228 -2074342 - MLT1C LTR MaLR 0 467 51 2110 152 64 15 chr21 42833228 42833636 -2073934 + MSTA LTR MaLR 1 428 0 1448 255 50 24 chr21 42833636 42833689 -2073881 - MLT1C LTR MaLR -416 51 1 698 311 84 34 chr21 42833865 42834904 -2072666 - L1MEc LINE L1 -4509 1887 797 367 317 0 8 chr21 42835557 42835677 -2071893 - L2 LINE L2 0 3313 3195 833 110 8 8 chr21 42835754 42835881 -2071689 + FLAM_C SINE Alu 1 127 -6 222 143 0 0 chr21 42837533 42837582 -2069988 + (CTCA)n Simple_repeat Simple_repeat 4 52 0 211 245 71 7 chr21 42837895 42838050 -2069520 + (CCTG)n Simple_repeat Simple_repeat 4 168 0 1049 195 52 2 chr21 42839704 42840008 -2067562 - MLT1B LTR MaLR -11 379 1 3601 201 46 75 chr21 42840703 42841878 -2065692 + L1M4 LINE L1 361 1569 -5077 2129 125 0 29 chr21 42841878 42842191 -2065379 + AluSx SINE Alu 1 304 -8 3601 201 46 75 chr21 42842191 42842313 -2065257 + L1M4 LINE L1 1569 1693 -4953 1090 150 64 14 chr21 42842313 42842533 -2065037 + L1MB3 LINE L1 5945 6175 -8 3601 201 46 75 chr21 42842533 42842997 -2064573 + L1M4 LINE L1 1693 2061 -4585 2154 125 0 31 chr21 42842997 42843317 -2064253 + AluSg SINE Alu 1 310 0 3601 201 46 75 chr21 42843317 42843331 -2064239 + L1M4 LINE L1 2061 2074 -4572 274 181 0 0 chr21 42843331 42843402 -2064168 - L1 LINE L1 -2713 3433 3363 2700 237 34 36 chr21 42843448 42844388 -2063182 - L1 LINE L1 -2770 3376 2439 1514 182 18 46 chr21 42844416 42844696 -2062874 + AluJo SINE Alu 11 282 -30 3812 191 38 36 chr21 42844702 42845506 -2062064 + L1MB5 LINE L1 4910 5718 -456 2546 68 0 3 chr21 42845506 42845813 -2061757 + AluSx SINE Alu 1 306 -6 3812 191 38 36 chr21 42845813 42846271 -2061299 + L1MB5 LINE L1 5718 6174 0 237 98 0 0 chr21 42847789 42847830 -2059740 + (CTCA)n Simple_repeat Simple_repeat 4 44 0 212 217 43 33 chr21 42848126 42848218 -2059352 + (CCTG)n Simple_repeat Simple_repeat 4 96 0 2011 224 65 38 chr21 42850402 42851005 -2056565 + L1MB7 LINE L1 5557 6175 -9 235 250 53 13 chr21 42851577 42851653 -2055917 + HAL1 LINE L1 809 887 -1620 339 274 29 143 chr21 42851688 42852067 -2055503 + HAL1 LINE L1 985 1320 -1187 687 336 80 42 chr21 42852412 42852953 -2054617 + L1M4 LINE L1 3223 3799 -2347 3757 168 28 21 chr21 42852953 42853005 -2054565 + L1MA9 LINE L1 5557 5607 -705 2530 64 3 16 chr21 42853005 42853319 -2054251 + AluY SINE Alu 1 310 -1 3757 168 28 21 chr21 42853319 42854017 -2053553 + L1MA9 LINE L1 5607 6312 0 687 336 80 42 chr21 42854017 42854184 -2053386 + L1M4 LINE L1 3799 3958 -2188 275 316 47 10 chr21 42854272 42854465 -2053105 + L1M4 LINE L1 4022 4221 -1925 570 254 113 30 chr21 42855182 42855580 -2051990 + HAL1 LINE L1 1231 1661 -846 2201 113 14 3 chr21 42855802 42856095 -2051475 - AluSg SINE Alu -14 296 1 2462 57 44 0 chr21 42856301 42856598 -2050972 + AluSg SINE Alu 1 310 0 249 98 0 0 chr21 42856828 42856869 -2050701 + (CTCA)n Simple_repeat Simple_repeat 4 44 0 266 237 52 29 chr21 42857182 42857355 -2050215 + (CCTG)n Simple_repeat Simple_repeat 4 180 0 1731 147 35 11 chr21 42860394 42860679 -2046891 + AluJb SINE Alu 12 303 -9 871 211 45 150 chr21 42860682 42861150 -2046420 + MLT1C LTR MaLR 34 452 -15 1343 209 85 59 chr21 42861812 42862271 -2045299 - MLT1D LTR MaLR -34 471 1 573 117 58 19 chr21 42862288 42862391 -2045179 - LTR64 LTR ERVK -5 553 447 283 154 108 0 chr21 42862385 42862419 -2045151 + LTR64 LTR ERVK 475 504 -54 * 2549 62 0 0 chr21 42862419 42862726 -2044844 - AluY SINE Alu -4 307 1 283 154 108 0 chr21 42862726 42862756 -2044814 + LTR64 LTR ERVK 504 546 -12 468 273 50 8 chr21 42863155 42863276 -2044294 + MER65-int LTR ERV1 719 844 -4027 * 722 169 47 27 chr21 42863170 42863318 -2044252 + LTR57-int LTR ERVL 310 460 -4883 2370 86 3 7 chr21 42863318 42863619 -2043951 + AluY SINE Alu 1 300 -11 1137 170 92 109 chr21 42863619 42863978 -2043592 + LTR64 LTR ERVK 188 540 -18 244 326 78 50 chr21 42865623 42865764 -2041806 - MIR SINE MIR -117 145 1 715 323 64 27 chr21 42866667 42867370 -2040200 - L1M4c LINE L1 -4569 1994 1118 209 184 0 0 chr21 42867644 42867682 -2039888 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 976 220 38 0 chr21 42867787 42867996 -2039574 - MER58A DNA MER1_type -3 221 5 8022 251 58 51 chr21 42869301 42870086 -2037484 + L1M4 LINE L1 658 1437 -5504 807 210 25 6 chr21 42870086 42870248 -2037322 + FRAM SINE Alu 1 165 -1 8022 251 58 51 chr21 42870248 42871128 -2036442 + L1M4 LINE L1 1437 2310 -4631 2102 101 4 0 chr21 42871128 42871395 -2036175 + AluSq SINE Alu 1 268 -45 8022 251 58 51 chr21 42871395 42871453 -2036117 + L1M4 LINE L1 2310 2366 -4575 2322 31 58 27 chr21 42871453 42871747 -2035823 + AluY SINE Alu 1 303 -8 8022 251 58 51 chr21 42871747 42871986 -2035584 + L1M4 LINE L1 2366 2602 -4339 3120 96 0 27 chr21 42871986 42872425 -2035145 - MSTA LTR MaLR -1 427 1 8022 251 58 51 chr21 42872425 42875153 -2032417 + L1M4 LINE L1 2602 5584 -1357 457 163 0 58 chr21 42875144 42875247 -2032323 + L1M4 LINE L1 6393 6492 -479 * 4489 199 49 18 chr21 42878229 42879342 -2028228 + L1 LINE L1 3859 5006 -1140 427 281 84 4 chr21 42879337 42879586 -2027984 + L1ME LINE L1 804 1072 -4998 * 2293 96 3 0 chr21 42879596 42879889 -2027681 + AluSc SINE Alu 11 304 -5 252 284 63 39 chr21 42880205 42880332 -2027238 + L1ME2 LINE L1 5611 5740 -381 11239 173 98 24 chr21 42880754 42882732 -2024838 + L1MA4A LINE L1 11 1841 -5008 2517 70 0 0 chr21 42882732 42883033 -2024537 + AluY SINE Alu 1 301 -10 11239 173 98 24 chr21 42883033 42883115 -2024455 + L1MA4A LINE L1 1841 1916 -4933 2111 145 132 5 chr21 42883115 42883495 -2024075 + MSTA LTR MaLR 1 428 0 11239 173 98 24 chr21 42883495 42883855 -2023715 + L1MA4A LINE L1 1916 2611 -4238 6640 181 14 77 chr21 42883841 42884458 -2023112 + L1MA4A LINE L1 3128 3783 -3065 * 728 198 8 0 chr21 42884458 42884584 -2022986 + FLAM_A SINE Alu 11 137 -5 6640 181 14 77 chr21 42884584 42884878 -2022692 + L1MA4A LINE L1 3783 4094 -2754 1748 175 0 37 chr21 42884878 42885175 -2022395 + AluJb SINE Alu 1 286 -26 486 0 0 0 chr21 42885175 42885229 -2022341 + (TG)n Simple_repeat Simple_repeat 2 55 0 6640 181 14 77 chr21 42885229 42885970 -2021600 + L1MA4A LINE L1 4092 4794 -2054 7412 136 33 10 chr21 42888609 42888637 -2018933 + L1MA4A LINE L1 4786 4812 -2193 2416 123 78 5 chr21 42888637 42889036 -2018534 + MSTA LTR MaLR 1 428 0 7412 136 33 10 chr21 42889036 42889312 -2018258 + L1MA4A LINE L1 4812 5080 -1925 2720 111 89 2 chr21 42889312 42889726 -2017844 + LTR47A LTR ERVL 3 452 0 7412 136 33 10 chr21 42889726 42891576 -2015994 + L1MA4A LINE L1 5080 6994 -11 657 262 85 98 chr21 42893726 42893825 -2013745 + L1ME LINE L1 530 629 -5632 1712 176 0 10 chr21 42893825 42894120 -2013450 + AluJo SINE Alu 1 292 -20 657 262 85 98 chr21 42894120 42894695 -2012875 + L1ME LINE L1 629 1486 -4775 1647 168 11 0 chr21 42894695 42894980 -2012590 + AluJo SINE Alu 1 288 -24 657 262 85 98 chr21 42894980 42895092 -2012478 + L1ME LINE L1 1486 1598 -4663 227 330 121 39 chr21 42896181 42896363 -2011207 + MIR SINE MIR 1 197 -65 312 353 161 0 chr21 42897510 42897765 -2009805 + L3 LINE CR1 1157 1452 -125 724 296 47 26 chr21 42897797 42898141 -2009429 + L1ME2 LINE L1 5714 6064 -100 2175 84 37 0 chr21 42898880 42899179 -2008391 + AluY SINE Alu 1 310 -1 613 308 57 60 chr21 42899561 42899662 -2007908 + HAL1 LINE L1 862 962 -1545 2539 40 0 0 chr21 42899662 42899960 -2007610 + AluY SINE Alu 1 298 -13 613 308 57 60 chr21 42899960 42900117 -2007453 + HAL1 LINE L1 962 1118 -1389 3061 66 59 12 chr21 42900117 42900154 -2007416 - MLT2A1 LTR ERVL 0 444 410 252 0 0 0 chr21 42900154 42900182 -2007388 + (TA)n Simple_repeat Simple_repeat 2 29 0 3061 66 59 12 chr21 42900182 42900567 -2007003 - MLT2A1 LTR ERVL -34 410 2 613 308 57 60 chr21 42900567 42900977 -2006593 + HAL1 LINE L1 1118 1529 -978 691 207 7 22 chr21 42901218 42901353 -2006217 - FLAM_A SINE Alu 0 133 1 279 175 0 0 chr21 42901494 42901551 -2006019 + C-rich Low_complexity Low_complexity 1 57 0 903 226 52 0 chr21 42901930 42902200 -2005370 + L1ME LINE L1 2326 2609 -3471 * 7563 199 33 16 chr21 42902179 42904401 -2003169 + L1MB4 LINE L1 3448 5704 -410 993 264 23 39 chr21 42904402 42904626 -2002944 + L1M4 LINE L1 4714 4933 -1213 2315 174 2 5 chr21 42904626 42905034 -2002536 + L1MB4 LINE L1 5768 6174 -6 993 264 23 39 chr21 42905034 42905120 -2002450 + L1M4 LINE L1 4933 5019 -1127 304 278 39 32 chr21 42906013 42906165 -2001405 - MER63 DNA MER1_type -6 1682 677 617 308 67 13 chr21 42906768 42906992 -2000578 + MIR SINE MIR 2 237 -25 306 265 11 33 chr21 42907421 42907602 -1999968 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 1199 119 8 111 chr21 42909314 42909361 -1998209 + AluJb SINE Alu 85 135 -177 1725 148 18 0 chr21 42909361 42909644 -1997926 + AluJb SINE Alu 1 288 -24 1199 119 8 111 chr21 42909644 42909840 -1997730 + AluJb SINE Alu 135 303 -9 261 301 116 20 chr21 42911266 42911412 -1996158 - MIR SINE MIR -59 203 44 380 263 51 8 chr21 42911437 42911555 -1996015 + MLT1D LTR MaLR 1 123 -382 1209 266 32 35 chr21 42911564 42911782 -1995788 - L1MA5A LINE L1 -3 6294 6076 2941 147 51 18 chr21 42911782 42912292 -1995278 - MER1A DNA MER1_type 0 527 1 1209 266 32 35 chr21 42912292 42912449 -1995121 - L1MA5A LINE L1 -221 6076 5920 299 278 11 22 chr21 42912451 42912541 -1995029 + MLT1D LTR MaLR 105 193 -312 9303 41 2 1 chr21 42915462 42916532 -1991038 + MER11C LTR ERVK 1 1071 0 351 294 0 0 chr21 42916747 42916927 -1990643 + (CA)n Simple_repeat Simple_repeat 1 180 0 221 269 22 52 chr21 42917720 42917854 -1989716 + G-rich Low_complexity Low_complexity 2 131 0 365 0 22 0 chr21 42918449 42918494 -1989076 + (CA)n Simple_repeat Simple_repeat 1 46 0 219 180 0 20 chr21 42918503 42918553 -1989017 + GA-rich Low_complexity Low_complexity 1 49 0 216 0 0 0 chr21 42920854 42920878 -1986692 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr21 42922044 42922069 -1985501 + GC_rich Low_complexity Low_complexity 1 25 0 279 255 9 38 chr21 42923259 42923365 -1984205 + GA-rich Low_complexity Low_complexity 1 103 0 335 307 47 0 chr21 42924158 42924310 -1983260 + MIR SINE MIR 58 219 -43 1441 219 6 3 chr21 42924468 42924779 -1982791 + AluJo SINE Alu 1 312 0 264 149 0 0 chr21 42924791 42924838 -1982732 + (GGGGA)n Simple_repeat Simple_repeat 2 48 0 1876 172 88 13 chr21 42924839 42925216 -1982354 + MSTA LTR MaLR 20 424 -4 1205 178 13 9 chr21 42925941 42926171 -1981399 - AluJo SINE Alu 0 312 82 2153 135 140 11 chr21 42926362 42926741 -1980829 + MSTA LTR MaLR 1 428 0 513 0 0 0 chr21 42927177 42927234 -1980336 + (TG)n Simple_repeat Simple_repeat 2 58 0 852 105 0 0 chr21 42927235 42927349 -1980221 - AluJb SINE Alu -194 118 5 332 91 0 0 chr21 42927349 42927393 -1980177 - Alu SINE Alu -256 44 1 440 316 144 42 chr21 42927587 42928732 -1978838 - L1M4 LINE L1 -1133 5013 3752 272 302 244 37 chr21 42928861 42929345 -1978225 + L2 LINE L2 2393 2976 -338 296 308 39 50 chr21 42929771 42930050 -1977520 - L1MC4 LINE L1 -48 7994 7719 510 388 48 26 chr21 42930091 42930470 -1977100 - L1M4 LINE L1 -2664 3482 3096 251 306 0 0 chr21 42930601 42930686 -1976884 - L1M4 LINE L1 -3627 2519 2435 2185 145 14 3 chr21 42931299 42931658 -1975912 + MLT2D LTR ERVL 1 363 -51 351 0 0 0 chr21 42931668 42931707 -1975863 + (CA)n Simple_repeat Simple_repeat 2 40 0 383 0 21 0 chr21 42931740 42931787 -1975783 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2213 111 0 0 chr21 42931787 42932094 -1975476 + AluSx SINE Alu 1 307 -5 2374 86 0 0 chr21 42932345 42932648 -1974922 - AluSg SINE Alu -7 303 1 2022 101 0 64 chr21 42932690 42933016 -1974554 - AluSc SINE Alu -4 305 1 2365 76 3 0 chr21 42935096 42935397 -1972173 + AluSp SINE Alu 1 302 -11 3797 145 68 12 chr21 42935822 42935946 -1971624 + L1MA4 LINE L1 5189 5305 -995 1864 142 0 35 chr21 42935946 42936262 -1971308 + AluJb SINE Alu 1 305 -7 3797 145 68 12 chr21 42936262 42936925 -1970645 + L1MA4 LINE L1 5305 6022 -278 325 233 33 0 chr21 42936927 42937017 -1970553 + L1MB3 LINE L1 6090 6182 -1 2197 62 4 0 chr21 42938799 42939072 -1968498 + AluSp SINE Alu 37 310 -3 1172 251 92 26 chr21 42940491 42940838 -1966732 - MLT1A2 LTR MaLR -4 370 1 3100 234 63 68 chr21 42940838 42942192 -1965378 - MLT1A1-int LTR MaLR 0 1735 12 1516 213 12 10 chr21 42942214 42942561 -1965009 - MLT1A1 LTR MaLR -16 451 1 1526 271 73 30 chr21 42943100 42943769 -1963801 - MER21B LTR ERV1 -58 805 108 232 159 16 48 chr21 42943756 42943819 -1963751 - MER21B LTR ERV1 -677 186 126 * 292 143 43 14 chr21 42943823 42943893 -1963677 - MER21B LTR ERV1 -684 179 108 237 180 0 49 chr21 42943880 42943941 -1963629 - MER21B LTR ERV1 -677 186 129 * 405 215 50 16 chr21 42943958 42944079 -1963491 - MER21B LTR ERV1 -687 176 52 242 250 0 0 chr21 42944115 42944163 -1963407 - MER21B LTR ERV1 -776 87 40 259 250 0 0 chr21 42944829 42944881 -1962689 + MIR SINE MIR 94 145 -63 934 251 124 10 chr21 42946342 42946736 -1960834 - MLT1C LTR MaLR -6 461 23 186 346 83 0 chr21 42946745 42946878 -1960692 - MIR3 SINE MIR -7 201 58 256 207 0 58 chr21 42947614 42947701 -1959869 + G-rich Low_complexity Low_complexity 3 84 0 190 349 54 8 chr21 42948314 42948443 -1959127 - L2 LINE L2 -192 3080 2946 261 329 74 34 chr21 42948665 42948963 -1958607 + L1MC/D LINE L1 5579 5888 -1920 256 269 192 5 chr21 42949608 42949801 -1957769 + Charlie2b DNA MER1_type 407 635 -2147 207 265 0 0 chr21 42949846 42949895 -1957675 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 339 308 19 0 chr21 42950013 42950117 -1957453 + Charlie2b DNA MER1_type 828 933 -1849 198 103 0 0 chr21 42950118 42950147 -1957423 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 787 230 124 14 chr21 42950161 42950452 -1957118 + MLT1F LTR MaLR 209 531 -11 432 343 36 20 chr21 42950458 42950706 -1956864 + Charlie2b DNA MER1_type 1017 1268 -1514 2540 137 68 7 chr21 42950735 42951144 -1956426 + MER61C LTR ERV1 1 434 0 641 224 14 20 chr21 42951144 42951291 -1956279 + MER61C-int LTR ERV1 2 147 -5070 1515 185 11 95 chr21 42951319 42951762 -1955808 + MER61C-int LTR ERV1 154 559 -4658 2030 116 0 4 chr21 42951763 42952038 -1955532 + AluSq SINE Alu 1 274 -39 996 127 6 11 chr21 42952043 42952224 -1955346 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 762 148 7 13 chr21 42952224 42952379 -1955191 + GA-rich Low_complexity Low_complexity 1 154 0 1816 110 7 14 chr21 42952379 42952671 -1954899 + MER61C-int LTR ERV1 550 839 -4378 3682 98 40 7 chr21 42952671 42953276 -1954294 + MER61C-int LTR ERV1 957 1581 -3636 * 18400 105 25 12 chr21 42953267 42956321 -1951249 + MER61C-int LTR ERV1 2125 5216 -1 1545 150 94 3 chr21 42956337 42956657 -1950913 + MER61C LTR ERV1 85 433 -1 935 140 26 66 chr21 42956796 42956930 -1950640 - MER4D LTR ERV1 0 903 780 2135 121 0 0 chr21 42956930 42957228 -1950342 - AluSx SINE Alu -14 298 1 935 140 26 66 chr21 42957228 42957321 -1950249 - MER4D LTR ERV1 -123 780 685 603 81 10 20 chr21 42957325 42957424 -1950146 + MER61C LTR ERV1 1 98 -566 3721 103 6 16 chr21 42957424 42957940 -1949630 - MER9 LTR ERVK 0 511 1 1529 117 171 83 chr21 42957942 42958317 -1949253 + MER4A LTR ERV1 257 664 0 547 205 0 0 chr21 42958317 42958438 -1949132 - LTR39 LTR ERV1 -262 521 401 352 109 0 0 chr21 42958486 42958541 -1949029 - MER49 LTR ERV1 -633 290 236 686 132 19 0 chr21 42958555 42958661 -1948909 - FRAM SINE Alu -23 153 46 476 151 0 0 chr21 42958672 42958758 -1948812 - MER49 LTR ERV1 -837 86 1 300 240 47 8 chr21 42958814 42958943 -1948627 + Charlie2 DNA MER1_type 2366 2499 -363 540 258 67 6 chr21 42959223 42959401 -1948169 + MER5A DNA MER1_type 1 189 0 234 364 121 7 chr21 42962927 42963067 -1944503 + L2 LINE L2 3156 3311 -2 350 202 0 11 chr21 42963067 42963156 -1944414 + GA-rich Low_complexity Low_complexity 3 90 0 239 258 0 10 chr21 42963371 42963468 -1944102 + (TG)n Simple_repeat Simple_repeat 2 97 0 2510 47 0 0 chr21 42964669 42964967 -1942603 + AluY SINE Alu 1 298 -13 549 338 69 31 chr21 42965094 42965414 -1942156 + L1MEd LINE L1 532 863 -5256 482 179 14 3 chr21 42965427 42965537 -1942033 - MLT1D LTR MaLR -10 480 261 431 283 54 36 chr21 42965538 42965786 -1941784 + L1MEd LINE L1 1111 1414 -4862 294 64 0 0 chr21 42966011 42966058 -1941512 + Alu SINE Alu 256 302 0 1819 183 0 0 chr21 42966166 42966461 -1941109 + AluJb SINE Alu 1 295 -17 2912 94 26 0 chr21 42966715 42967141 -1940429 - LTR3b LTR ERVK 0 437 1 241 311 11 0 chr21 42968277 42968367 -1939203 + L1MEd LINE L1 647 737 -5468 373 241 71 53 chr21 42968450 42968620 -1938950 + MLT1I LTR MaLR 235 407 -2 373 382 106 7 chr21 42970764 42971047 -1936523 + L1MEd LINE L1 39 349 -6047 554 342 60 13 chr21 42971812 42972210 -1935360 + L1MEd LINE L1 719 1135 -5070 270 276 0 0 chr21 42972212 42972299 -1935271 + (TG)n Simple_repeat Simple_repeat 1 87 0 268 286 92 0 chr21 42972556 42972675 -1934895 - MER20 DNA MER1_type -89 130 1 195 114 0 0 chr21 42973435 42973470 -1934100 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 339 335 60 16 chr21 42975523 42975705 -1931865 - MIR SINE MIR -44 218 29 1147 254 127 6 chr21 42978283 42978778 -1928792 + MER68 LTR ERV1 1 555 -7 250 294 111 0 chr21 42978968 42979094 -1928476 - Charlie4a DNA MER1_type -103 405 266 2421 63 7 0 chr21 42979820 42980119 -1927451 - AluY SINE Alu -10 301 1 2082 128 0 0 chr21 42980861 42981158 -1926412 - AluY SINE Alu -14 297 1 301 306 60 6 chr21 42983375 42983558 -1924012 + L2 LINE L2 2851 3043 -229 225 345 109 0 chr21 42983634 42983744 -1923826 + L2 LINE L2 3187 3308 -5 411 382 90 12 chr21 42985300 42985635 -1921935 + L2 LINE L2 2489 2849 -465 27 0 0 0 chr21 42986728 42986755 -1920815 + AT_rich Low_complexity Low_complexity 1 27 0 341 294 256 0 chr21 42986760 42986920 -1920650 - L1ME4a LINE L1 -56 6065 5865 367 323 110 68 chr21 42986942 42986991 -1920579 - L1ME4a LINE L1 -285 5836 5791 2826 88 6 0 chr21 42986991 42987353 -1920217 + THE1B LTR MaLR 1 364 0 367 323 110 68 chr21 42987353 42987566 -1920004 - L1ME4a LINE L1 -330 5791 5563 2322 100 0 0 chr21 42987967 42988278 -1919292 + AluSx SINE Alu 1 311 -1 182 376 10 30 chr21 42988811 42988912 -1918658 + MIR3 SINE MIR 76 174 -34 304 370 79 23 chr21 42989355 42989571 -1917999 + L1M2 LINE L1 1840 2067 -4782 201 325 45 37 chr21 42990161 42990312 -1917258 - MIR SINE MIR -64 144 46 22 0 0 0 chr21 42990522 42990544 -1917026 + AT_rich Low_complexity Low_complexity 1 22 0 364 216 121 68 chr21 42992507 42992697 -1914873 - L1ME4a LINE L1 -4 6117 5918 3507 223 76 9 chr21 42992725 42994306 -1913264 + L1ME1 LINE L1 4469 6161 -5 1842 164 0 3 chr21 42994314 42994606 -1912964 + AluJo SINE Alu 1 291 -21 268 186 14 14 chr21 42994608 42994678 -1912892 + GA-rich Low_complexity Low_complexity 4 73 0 363 315 155 33 chr21 42994706 42994919 -1912651 - L1ME4a LINE L1 -219 5902 5664 2375 112 0 0 chr21 42997251 42997564 -1910006 + AluSq SINE Alu 1 313 0 2634 62 3 0 chr21 42998721 42999029 -1908541 - AluY SINE Alu -2 309 1 335 159 14 14 chr21 42999143 42999212 -1908358 - AluJ/FRAM SINE Alu -4 298 230 289 210 20 20 chr21 42999222 42999322 -1908248 + L1ME LINE L1 3145 3244 -2902 247 295 87 7 chr21 42999320 42999469 -1908101 + L1ME LINE L1 4156 4316 -1830 * 499 284 88 32 chr21 42999472 42999544 -1908026 + L1ME LINE L1 4640 4707 -1439 2617 71 0 0 chr21 42999544 42999854 -1907716 + AluSx SINE Alu 1 310 -2 499 284 88 32 chr21 42999854 43000123 -1907447 + L1ME LINE L1 4707 5000 -1146 1478 163 147 6 chr21 43000180 43000500 -1907070 + MLT1A1 LTR MaLR 1 365 0 1133 195 107 77 chr21 43000500 43000875 -1906695 + L1ME LINE L1 5364 5749 -417 1807 131 81 39 chr21 43000875 43001235 -1906335 + THE1C LTR MaLR 1 375 0 8800 109 68 28 chr21 43001235 43002754 -1904816 + THE1C-int LTR MaLR 1 1580 0 1717 162 58 22 chr21 43002755 43003114 -1904456 + THE1C LTR MaLR 1 372 -3 193 295 168 7 chr21 43003291 43003440 -1904130 - L2 LINE L2 -1230 2084 1912 650 270 108 52 chr21 43004150 43004457 -1903113 + L1MC4a LINE L1 5562 5885 -299 750 157 139 18 chr21 43004476 43004711 -1902859 + MLT1B LTR MaLR 79 383 -7 649 230 48 56 chr21 43004714 43004966 -1902604 + L1MC/D LINE L1 4914 5163 -983 2563 65 3 0 chr21 43004968 43005274 -1902296 - AluY SINE Alu -4 307 1 741 214 111 101 chr21 43005274 43005427 -1902143 + L1MC/D LINE L1 5272 5422 -820 2015 125 33 3 chr21 43005427 43005730 -1901840 + AluSx SINE Alu 1 312 0 741 214 111 101 chr21 43005730 43005795 -1901775 + L1MC/D LINE L1 5422 5485 -757 1917 185 0 0 chr21 43005795 43006103 -1901467 + AluJb SINE Alu 5 312 0 741 214 111 101 chr21 43006103 43006299 -1901271 + L1MC/D LINE L1 5485 5691 -551 818 220 16 65 chr21 43006304 43006549 -1901021 + MLT1C LTR MaLR 193 425 -42 288 303 45 26 chr21 43006651 43006806 -1900764 + MIR3 SINE MIR 50 207 -1 1088 206 248 50 chr21 43007053 43007587 -1899983 - MLT1E2 LTR MaLR 0 626 1 2680 42 3 0 chr21 43007876 43008183 -1899387 + AluY SINE Alu 1 308 -3 288 138 35 17 chr21 43008367 43008425 -1899145 + MER65A LTR ERV1 1 59 -386 977 194 17 6 chr21 43008438 43008618 -1898952 + AluJb SINE Alu 122 303 -9 10953 126 77 17 chr21 43008645 43010707 -1896863 - Tigger1 DNA MER2_type -195 2223 2 1098 225 106 13 chr21 43010763 43011074 -1896496 - MER2 DNA MER2_type -5 340 1 235 268 165 16 chr21 43011325 43011452 -1896118 - MIR3 SINE MIR -48 160 15 263 303 130 38 chr21 43013335 43013758 -1893812 + L2 LINE L2 2851 3312 -1 278 225 0 28 chr21 43014209 43014280 -1893290 - MLT1J LTR MaLR -8 503 435 268 173 0 19 chr21 43014362 43014414 -1893156 + MER53 DNA DNA 139 189 0 550 196 0 0 chr21 43014929 43015026 -1892544 + FLAM_A SINE Alu 1 97 -45 1017 96 128 0 chr21 43015054 43015210 -1892360 + MSTA LTR MaLR 253 428 0 211 298 18 62 chr21 43018510 43018651 -1888919 - MIR SINE MIR -68 140 48 2363 82 0 10 chr21 43018672 43018966 -1888604 + AluY SINE Alu 1 291 -20 21 71 0 0 chr21 43019323 43019365 -1888205 + AT_rich Low_complexity Low_complexity 1 42 0 354 172 162 0 chr21 43020615 43020714 -1886856 + HAL1 LINE L1 21 135 -2372 849 187 0 0 chr21 43021339 43021624 -1885946 + (CA)n Simple_repeat Simple_repeat 1 285 0 1996 139 7 0 chr21 43021737 43022024 -1885546 + AluJo SINE Alu 5 293 -19 1091 259 117 60 chr21 43022037 43022495 -1885075 + HAL1 LINE L1 1032 1462 -1045 1899 133 6 71 chr21 43022495 43022819 -1884751 - AluJo SINE Alu -7 305 3 1091 259 117 60 chr21 43022819 43023184 -1884386 + HAL1 LINE L1 1462 1902 -605 354 244 96 0 chr21 43023882 43023997 -1883573 + L1MC5 LINE L1 6991 7116 -845 710 158 8 24 chr21 43024862 43024989 -1882581 + FLAM_C SINE Alu 2 126 -17 301 163 0 71 chr21 43028250 43028348 -1879222 + (CGGGG)n Simple_repeat Simple_repeat 4 94 0 24 67 0 0 chr21 43028585 43028630 -1878940 + GC_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr21 43028924 43028960 -1878610 + GC_rich Low_complexity Low_complexity 1 36 0 245 216 125 0 chr21 43029100 43029188 -1878382 - MIR SINE MIR -118 144 46 216 186 23 0 chr21 43029496 43029539 -1878031 - MIR SINE MIR -179 83 40 378 306 50 89 chr21 43030609 43030673 -1876897 + HAL1 LINE L1 1107 1172 -1335 2178 108 24 0 chr21 43030673 43030960 -1876610 + AluSg SINE Alu 1 294 -16 378 306 50 89 chr21 43030960 43031100 -1876470 + HAL1 LINE L1 1172 1300 -1207 2158 144 0 3 chr21 43031100 43031406 -1876164 + AluSx SINE Alu 1 305 -7 378 306 50 89 chr21 43031406 43031481 -1876089 + HAL1 LINE L1 1300 1376 -1131 1199 223 43 83 chr21 43031737 43031776 -1875794 - MLT1B LTR MaLR 0 390 351 2393 89 3 0 chr21 43031776 43032078 -1875492 + AluSp SINE Alu 1 303 -10 1199 223 43 83 chr21 43032078 43032437 -1875133 - MLT1B LTR MaLR -39 351 8 310 251 88 57 chr21 43032781 43033112 -1874458 + L1MEd LINE L1 782 1122 -5083 1559 118 135 13 chr21 43033123 43033360 -1874210 + AluSg SINE Alu 24 289 -21 528 306 149 17 chr21 43033360 43033679 -1873891 + L1MEd LINE L1 1325 1600 -4796 3213 99 2 4 chr21 43033679 43034145 -1873425 + MER4C LTR ERV1 1 465 0 528 306 149 17 chr21 43034145 43034427 -1873143 + L1MEd LINE L1 1600 2006 -4390 9222 18 3 277 chr21 43034490 43036415 -1871155 + SVA Other Other 1 1407 0 229 133 0 22 chr21 43037009 43037054 -1870516 + L1ME3A LINE L1 6121 6164 -6 1754 113 0 0 chr21 43037075 43037305 -1870265 + AluSq SINE Alu 84 313 0 256 210 260 0 chr21 43037440 43037540 -1870030 - MIR SINE MIR -21 241 116 836 325 97 24 chr21 43037559 43038094 -1869476 + L1MCc LINE L1 25 598 -5825 1238 258 152 42 chr21 43038191 43039394 -1868176 + L1MCc LINE L1 811 2181 -4760 294 319 84 39 chr21 43039376 43039708 -1867862 + L1MDa LINE L1 1 347 -6193 * 393 337 78 42 chr21 43040051 43040461 -1867109 + L1MDa LINE L1 780 1204 -5326 3662 106 25 94 chr21 43040504 43041049 -1866521 - MER51A LTR ERV1 0 634 144 252 0 0 0 chr21 43041049 43041077 -1866493 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 3662 106 25 94 chr21 43041077 43041212 -1866358 - MER51A LTR ERV1 -490 144 1 966 133 0 7 chr21 43041213 43041356 -1866214 - FRAM SINE Alu -34 142 1 1560 273 87 23 chr21 43041404 43042229 -1865341 + L1MDa LINE L1 1260 2094 -4446 330 206 15 0 chr21 43042229 43042297 -1865273 - MER58 DNA MER1_type 0 2420 2352 830 116 0 16 chr21 43042340 43042469 -1865101 + AluJo/FLAM SINE Alu 1 127 -185 2162 107 0 3 chr21 43042472 43042772 -1864798 - AluSg SINE Alu -11 299 1 21 0 0 0 chr21 43042775 43042796 -1864774 + AT_rich Low_complexity Low_complexity 1 21 0 4228 181 53 45 chr21 43042810 43043757 -1863813 + LTR13 LTR ERVK 1 954 0 2257 28 3 31 chr21 43043791 43044078 -1863492 - AluY SINE Alu -32 279 1 26 0 0 0 chr21 43044121 43044147 -1863423 + AT_rich Low_complexity Low_complexity 1 26 0 228 67 0 0 chr21 43044147 43044177 -1863393 - MER58 DNA MER1_type -251 90 61 788 250 47 84 chr21 43044322 43044666 -1862904 + L1M4 LINE L1 4573 4903 -1243 460 300 106 0 chr21 43045177 43045337 -1862233 + MER5A DNA MER1_type 6 182 -7 383 257 122 0 chr21 43045491 43045639 -1861931 - MER5B DNA MER1_type -4 174 9 513 53 0 140 chr21 43046414 43046621 -1860949 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 620 14 0 163 chr21 43046651 43046866 -1860704 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 1234 247 88 0 chr21 43046992 43047344 -1860226 + MLT1B LTR MaLR 1 383 -7 228 202 0 45 chr21 43047943 43048032 -1859538 + GA-rich Low_complexity Low_complexity 3 87 0 233 310 10 0 chr21 43048528 43048628 -1858942 + (CCCCG)n Simple_repeat Simple_repeat 4 104 0 311 337 116 2 chr21 43048691 43049095 -1858475 + HERVL LTR ERVL 3687 4136 -1518 359 269 106 0 chr21 43049231 43049372 -1858198 + LTR33 LTR ERVL 311 466 -55 514 264 188 45 chr21 43049383 43049675 -1857895 - MLT1H LTR MaLR -89 460 127 1609 146 77 17 chr21 43049870 43050157 -1857413 + AluJo SINE Alu 1 304 -8 2348 72 3 3 chr21 43050164 43050470 -1857100 + AluY SINE Alu 1 306 -5 396 300 89 16 chr21 43050538 43050728 -1856842 + L1 LINE L1 3561 3764 -2382 572 192 8 48 chr21 43050729 43050854 -1856716 + FLAM_A SINE Alu 12 131 -11 780 222 50 34 chr21 43050896 43051135 -1856435 - MLT2B1 LTR ERVL -276 244 2 1086 272 88 0 chr21 43052128 43052448 -1855122 - MER7A DNA MER2_type 0 346 1 840 161 0 0 chr21 43052837 43052967 -1854603 - FLAM_C SINE Alu -8 135 6 362 222 41 11 chr21 43053898 43054005 -1853565 + MLT1A2 LTR MaLR 1 109 -256 207 179 0 0 chr21 43054019 43054058 -1853512 + (TCTCTG)n Simple_repeat Simple_repeat 5 43 0 180 125 0 0 chr21 43054120 43054152 -1853418 + (TCTCTG)n Simple_repeat Simple_repeat 6 37 0 183 80 0 0 chr21 43054189 43054214 -1853356 + (TC)n Simple_repeat Simple_repeat 1 25 0 398 229 176 0 chr21 43054240 43054393 -1853177 + MLT1A2 LTR MaLR 195 374 0 2440 48 3 19 chr21 43054405 43054721 -1852849 + AluY SINE Alu 1 311 0 2946 158 99 2 chr21 43055164 43055419 -1852151 - MER41C LTR ERV1 0 554 325 2331 87 0 6 chr21 43055419 43055730 -1851840 - AluSx SINE Alu -3 309 1 2946 158 99 2 chr21 43055730 43055979 -1851591 - MER41C LTR ERV1 -229 325 1 337 235 20 69 chr21 43058175 43058277 -1849293 + L1MC/D LINE L1 5557 5653 -2155 2259 100 0 0 chr21 43058488 43058788 -1848782 - AluSx SINE Alu -12 300 1 2058 95 7 7 chr21 43058922 43059216 -1848354 - AluSq SINE Alu -19 294 1 2169 110 7 0 chr21 43062621 43062922 -1844648 - AluSq SINE Alu -10 303 1 222 118 0 0 chr21 43063597 43063631 -1843939 + (TG)n Simple_repeat Simple_repeat 2 35 0 2394 76 0 3 chr21 43063667 43063970 -1843600 + AluY SINE Alu 1 302 -9 1452 195 3 36 chr21 43067636 43067943 -1839627 + AluJb SINE Alu 1 297 -15 799 195 61 61 chr21 43068748 43068994 -1838576 + LTR53 LTR ERVL 1 246 -273 793 276 43 16 chr21 43069167 43069511 -1838059 + L1ME LINE L1 5344 5640 -522 2060 62 0 4 chr21 43070528 43070784 -1836786 + AluY SINE Alu 1 255 -56 207 0 0 0 chr21 43070792 43070815 -1836755 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2280 75 7 0 chr21 43071251 43071543 -1836027 - AluSc SINE Alu -15 294 1 232 253 0 51 chr21 43072227 43072306 -1835264 + L2 LINE L2 3234 3308 -5 2244 87 7 0 chr21 43072680 43072980 -1834590 + AluSp SINE Alu 1 302 -11 2170 101 7 7 chr21 43074830 43075138 -1832432 - AluSq SINE Alu -5 308 1 207 0 0 0 chr21 43076651 43076674 -1830896 + (CA)n Simple_repeat Simple_repeat 2 24 0 215 245 20 20 chr21 43076695 43076797 -1830773 + (CA)n Simple_repeat Simple_repeat 2 103 0 225 0 0 0 chr21 43076816 43076841 -1830729 + (CA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr21 43076865 43076888 -1830682 + (CA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr21 43076913 43076936 -1830634 + (CA)n Simple_repeat Simple_repeat 2 24 0 261 132 26 13 chr21 43077077 43077153 -1830417 + (CA)n Simple_repeat Simple_repeat 2 78 0 1255 211 40 26 chr21 43077161 43077555 -1830015 + L1ME2 LINE L1 5384 5700 -464 543 284 82 0 chr21 43077688 43077940 -1829630 + L1ME2 LINE L1 5798 6082 -80 2242 242 155 54 chr21 43078780 43079870 -1827700 + L1MC4 LINE L1 6705 7904 -138 828 179 0 0 chr21 43079906 43080040 -1827530 - AluJo SINE Alu -178 134 1 26 74 0 0 chr21 43080045 43080099 -1827471 + AT_rich Low_complexity Low_complexity 1 54 0 264 259 148 0 chr21 43080107 43080215 -1827355 + L1MC4 LINE L1 7918 8041 -1 2122 95 51 0 chr21 43080700 43080994 -1826576 + AluSx SINE Alu 1 309 -3 183 274 48 0 chr21 43082978 43083040 -1824530 + L2 LINE L2 2677 2741 -573 184 274 32 0 chr21 43083207 43083269 -1824301 + L2 LINE L2 3160 3223 -49 27 49 0 0 chr21 43083898 43083939 -1823631 + GC_rich Low_complexity Low_complexity 1 41 0 228 177 0 133 chr21 43084332 43084445 -1823125 + (CGGGG)n Simple_repeat Simple_repeat 4 101 0 431 224 40 8 chr21 43085284 43085409 -1822161 + LTR24B LTR ERV1 438 566 -10 950 253 65 39 chr21 43085543 43085927 -1821643 + LTR24B-int LTR ERV1 293 686 -4437 2272 92 0 0 chr21 43086577 43086870 -1820700 - AluSg SINE Alu -17 293 1 2067 126 10 0 chr21 43087560 43087862 -1819708 - AluSp SINE Alu -8 305 1 4109 96 50 21 chr21 43088381 43088996 -1818574 - LTR10E LTR ERV1 0 633 1 523 336 64 52 chr21 43089142 43089848 -1817722 + PRIMA41-int LTR ERV1 2142 2855 -1792 2161 105 7 0 chr21 43089857 43090151 -1817419 + AluSx SINE Alu 1 296 -16 328 296 19 0 chr21 43090467 43090575 -1816995 + PRIMA41-int LTR ERV1 7189 7298 -458 1841 132 31 0 chr21 43090887 43091174 -1816396 + AluSx SINE Alu 1 296 -16 233 356 11 11 chr21 43092438 43092525 -1815045 - MIR SINE MIR -161 101 15 1343 206 55 91 chr21 43092720 43093283 -1814287 - LTR26E LTR ERV1 0 609 1 2196 95 0 14 chr21 43093433 43093727 -1813843 - AluSc SINE Alu -19 290 1 619 243 58 0 chr21 43093765 43093938 -1813632 - MER5A DNA MER1_type -1 188 6 1218 162 27 9 chr21 43094209 43094431 -1813139 - AluJo SINE Alu -2 310 85 601 154 0 0 chr21 43094496 43094587 -1812983 - AluJo SINE Alu -221 91 1 270 253 13 38 chr21 43094667 43094746 -1812824 + MER81 DNA DNA 2 78 -36 2120 93 52 0 chr21 43102779 43103069 -1804501 + AluSx SINE Alu 1 305 -7 303 294 56 75 chr21 43103084 43103244 -1804326 + L1MDa LINE L1 2367 2523 -4017 479 135 41 35 chr21 43104321 43104491 -1803079 + (CAGAGA)n Simple_repeat Simple_repeat 2 172 0 1819 145 3 0 chr21 43105707 43105997 -1801573 + AluJo SINE Alu 18 308 -4 2086 113 33 0 chr21 43106001 43106364 -1801206 + AluSq SINE Alu 1 373 0 253 290 131 0 chr21 43106576 43106683 -1800887 + MER63 DNA MER1_type 705 825 -235 222 247 135 11 chr21 43108013 43108102 -1799468 - MIR SINE MIR -103 159 60 1641 217 90 65 chr21 43108373 43108953 -1798617 + MER77 LTR ERV1 5 598 -7 362 353 0 22 chr21 43112312 43112580 -1794990 + (TG)n Simple_repeat Simple_repeat 1 262 0 447 355 0 14 chr21 43112688 43113071 -1794499 + (TG)n Simple_repeat Simple_repeat 1 377 0 489 319 0 16 chr21 43113083 43113265 -1794305 + (TG)n Simple_repeat Simple_repeat 2 180 0 256 306 14 0 chr21 43114517 43114589 -1792981 + L2 LINE L2 3241 3313 0 559 208 30 14 chr21 43114736 43115233 -1792337 + (CA)n Simple_repeat Simple_repeat 1 505 0 324 153 35 0 chr21 43115248 43115333 -1792237 + (CA)n Simple_repeat Simple_repeat 2 89 0 302 239 0 0 chr21 43115414 43115485 -1792085 - MER58B DNA MER1_type -10 331 261 210 188 30 36 chr21 43115929 43116012 -1791558 + MIR SINE MIR 63 146 -62 273 88 70 0 chr21 43116569 43116626 -1790944 + CT-rich Low_complexity Low_complexity 1 61 0 817 169 0 0 chr21 43116626 43116756 -1790814 - AluSx SINE Alu -2 310 181 772 44 0 0 chr21 43116762 43116853 -1790717 - AluSx SINE Alu -212 100 10 363 209 23 0 chr21 43116933 43117019 -1790551 + MER103 DNA DNA 8 95 -71 252 250 22 121 chr21 43118265 43118489 -1789081 + L1MC4a LINE L1 6079 6280 -1528 1657 214 43 13 chr21 43118751 43118842 -1788728 + LTR2 LTR ERV1 41 128 -321 207 0 0 0 chr21 43118842 43118865 -1788705 + (TTA)n Simple_repeat Simple_repeat 1 23 0 1657 214 43 13 chr21 43118865 43119170 -1788400 + LTR2 LTR ERV1 128 449 0 664 311 156 7 chr21 43119197 43119914 -1787656 + L1MC4 LINE L1 6807 7630 -412 277 258 22 11 chr21 43120112 43120201 -1787369 + L1MC4 LINE L1 7696 7785 -257 347 235 17 42 chr21 43120412 43120531 -1787039 + L1MC4 LINE L1 7794 7909 -133 384 329 30 6 chr21 43121488 43121655 -1785915 + (CA)n Simple_repeat Simple_repeat 1 171 0 398 175 35 0 chr21 43121688 43121802 -1785768 + (CA)n Simple_repeat Simple_repeat 2 119 0 1701 173 0 32 chr21 43125092 43125404 -1782166 + AluJb SINE Alu 11 312 0 2152 95 10 3 chr21 43125469 43125765 -1781805 - AluY SINE Alu -13 298 1 2171 93 0 0 chr21 43126359 43126662 -1780908 - AluSg SINE Alu 0 303 1 2330 80 7 0 chr21 43127027 43127328 -1780242 + AluSq SINE Alu 1 303 -10 344 328 0 55 chr21 43127444 43127572 -1779998 + L1ME4a LINE L1 5266 5386 -776 374 287 107 40 chr21 43127742 43127892 -1779678 + L1ME4a LINE L1 5956 6115 -6 237 288 18 0 chr21 43128934 43129004 -1778566 - MIR SINE MIR -45 163 92 255 127 9 100 chr21 43130682 43130792 -1776778 + (CACAC)n Simple_repeat Simple_repeat 1 100 0 222 118 0 0 chr21 43132024 43132058 -1775512 + (GGA)n Simple_repeat Simple_repeat 2 35 0 2143 114 0 16 chr21 43132149 43132465 -1775105 - AluSq SINE Alu -2 311 1 403 307 98 64 chr21 43132774 43132826 -1774744 + L1M4c LINE L1 2195 2244 -4140 1583 154 51 38 chr21 43132826 43133119 -1774451 + AluJb SINE Alu 5 301 -11 403 307 98 64 chr21 43133119 43133330 -1774240 + L1M4c LINE L1 2244 2467 -3917 644 262 80 70 chr21 43133334 43134061 -1773509 + L1MC5 LINE L1 7103 7925 -36 836 206 22 0 chr21 43134071 43134251 -1773319 + L1MB3 LINE L1 5998 6181 -2 545 337 160 29 chr21 43134279 43134589 -1772981 + L1M4c LINE L1 2473 2741 -3641 2131 134 0 3 chr21 43134589 43134902 -1772668 + AluSx SINE Alu 1 312 0 545 337 160 29 chr21 43134902 43135104 -1772466 + L1M4c LINE L1 2741 3052 -3330 389 200 33 0 chr21 43135606 43135696 -1771874 + L1MB7 LINE L1 6005 6097 -87 476 239 0 0 chr21 43135759 43135851 -1771719 + AluJb SINE Alu 213 304 -8 585 42 0 0 chr21 43135852 43135924 -1771646 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 609 239 24 81 chr21 43135939 43136236 -1771334 + L1MDb LINE L1 802 1081 -5328 2213 74 0 80 chr21 43136238 43136575 -1770995 + AluY SINE Alu 1 310 -1 21 0 0 0 chr21 43136575 43136596 -1770974 + AT_rich Low_complexity Low_complexity 1 21 0 321 346 47 16 chr21 43138745 43138872 -1768698 + HAL1 LINE L1 2006 2136 -371 285 29 0 0 chr21 43139048 43139082 -1768488 + (TCGGG)n Simple_repeat Simple_repeat 5 38 0 810 237 32 0 chr21 43139976 43140162 -1767408 - MER58A DNA MER1_type -31 193 2 263 200 0 0 chr21 43141408 43141468 -1766102 + L1ME4a LINE L1 6058 6117 -4 273 185 37 0 chr21 43142721 43142775 -1764795 - MIR SINE MIR -116 146 91 24 32 0 0 chr21 43143006 43143037 -1764533 + GC_rich Low_complexity Low_complexity 1 31 0 403 299 30 0 chr21 43144402 43144536 -1763034 - MER5A DNA MER1_type -20 169 32 224 320 86 55 chr21 43144869 43144997 -1762573 - L2 LINE L2 -206 3066 2935 2470 74 0 0 chr21 43146366 43146677 -1760893 - AluY SINE Alu 0 311 1 577 291 48 22 chr21 43147165 43147436 -1760134 + MER34 LTR ERV1 33 310 -232 711 203 44 0 chr21 43147470 43147628 -1759942 + MER34 LTR ERV1 378 542 0 1542 178 18 22 chr21 43147678 43147953 -1759617 + AluJo SINE Alu 9 282 -30 22 0 0 0 chr21 43147953 43147975 -1759595 + AT_rich Low_complexity Low_complexity 1 22 0 1845 194 44 21 chr21 43148102 43148489 -1759081 - MSTD LTR MaLR 0 396 1 2242 95 3 0 chr21 43148544 43148838 -1758732 - AluSp SINE Alu -18 295 1 437 81 32 0 chr21 43148972 43149034 -1758536 + Alu SINE Alu 230 293 -17 1636 149 3 17 chr21 43149861 43150150 -1757420 + AluJo SINE Alu 1 285 -27 29 78 0 0 chr21 43150561 43150625 -1756945 + GC_rich Low_complexity Low_complexity 1 64 0 406 219 101 25 chr21 43150984 43151103 -1756467 - L1MB8 LINE L1 -140 6038 5911 1151 229 144 57 chr21 43151105 43151886 -1755684 - L1M4 LINE L1 -4834 2021 1216 418 337 75 0 chr21 43152256 43152508 -1755062 - L1M4 LINE L1 -6025 834 564 1719 255 110 4 chr21 43152994 43153484 -1754086 - MER34 LTR ERV1 0 542 1 431 301 43 29 chr21 43155232 43155407 -1752163 + MIR SINE MIR 45 222 -21 1909 93 0 80 chr21 43156128 43156475 -1751095 - AluSc SINE Alu 0 309 1 1078 164 22 22 chr21 43159144 43159369 -1748201 - MER52A LTR ERV1 0 1755 1531 1027 218 116 4 chr21 43159366 43159641 -1747929 - MER52A LTR ERV1 -1131 624 247 * 259 303 46 26 chr21 43164327 43164479 -1743091 - L1M4 LINE L1 -1873 4509 4355 2054 119 26 7 chr21 43165373 43165675 -1741895 + AluSx SINE Alu 1 308 -4 852 188 0 24 chr21 43165960 43166125 -1741445 - AluJb SINE Alu -15 297 137 349 291 87 61 chr21 43166653 43166849 -1740721 - L1 LINE L1 -1007 5139 4939 427 316 69 71 chr21 43171465 43171748 -1735822 - L1M4 LINE L1 -2608 3774 3492 1593 188 0 28 chr21 43171748 43172035 -1735535 + AluJo SINE Alu 11 289 -23 427 316 69 71 chr21 43172035 43172399 -1735171 - L1M4 LINE L1 -2890 3492 686 * 453 308 62 15 chr21 43172379 43172574 -1734996 - L1MC4 LINE L1 -1 8041 7838 2760 229 93 20 chr21 43172608 43173525 -1734045 - L1ME2 LINE L1 -1 6163 5314 2141 87 3 7 chr21 43173525 43173814 -1733756 - AluSc SINE Alu -6 303 16 2760 229 93 20 chr21 43173814 43173879 -1733691 - L1ME2 LINE L1 -850 5314 5255 198 103 0 0 chr21 43173879 43173908 -1733662 + (TG)n Simple_repeat Simple_repeat 2 30 0 2760 229 93 20 chr21 43173908 43174757 -1732813 - L1ME2 LINE L1 -909 5255 4211 440 368 47 26 chr21 43175414 43175648 -1731922 - L1 LINE L1 -1329 4817 4579 259 371 65 17 chr21 43175893 43176246 -1731324 - L1ME2 LINE L1 -2094 4052 3683 2426 63 0 0 chr21 43179195 43179494 -1728076 - AluY SINE Alu -12 299 1 217 146 91 18 chr21 43179762 43179817 -1727753 + MIR SINE MIR 84 142 -120 2117 252 135 32 chr21 43180030 43180995 -1726575 - L1MC3 LINE L1 -19 7766 6703 821 138 0 50 chr21 43184987 43185146 -1722424 - AluJb SINE Alu 0 312 162 266 121 0 87 chr21 43188888 43189037 -1718533 + (CGGGG)n Simple_repeat Simple_repeat 4 139 0 417 171 0 88 chr21 43189064 43189257 -1718313 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 1669 159 30 3 chr21 43189396 43189691 -1717879 + AluJb SINE Alu 1 303 -9 306 301 145 30 chr21 43191068 43191433 -1716137 - MLT1C LTR MaLR -10 457 51 235 258 90 0 chr21 43191843 43191932 -1715638 + L2 LINE L2 3171 3267 -46 223 279 77 29 chr21 43194049 43194153 -1713417 - MIR SINE MIR -76 132 24 413 203 32 10 chr21 43194396 43194810 -1712760 + (CA)n Simple_repeat Simple_repeat 1 423 0 278 294 35 71 chr21 43196820 43196990 -1710580 + MIR3 SINE MIR 41 204 -4 588 250 0 0 chr21 43198803 43198979 -1708591 + (TG)n Simple_repeat Simple_repeat 1 176 0 206 294 101 25 chr21 43200685 43200804 -1706766 + MIR SINE MIR 16 143 -119 216 143 0 0 chr21 43202970 43203012 -1704558 + (TG)n Simple_repeat Simple_repeat 1 42 0 324 235 148 0 chr21 43203563 43203678 -1703892 + MLT1F1 LTR MaLR 435 566 -1 308 209 12 0 chr21 43204920 43205006 -1702564 + (TG)n Simple_repeat Simple_repeat 2 88 0 274 196 18 0 chr21 43210350 43210406 -1697164 - MER63 DNA MER1_type -94 742 686 558 330 57 3 chr21 43211019 43211334 -1696236 + L1MD3 LINE L1 5636 5967 -2028 186 133 0 0 chr21 43212375 43212405 -1695165 + (CCCCCG)n Simple_repeat Simple_repeat 2 31 0 294 254 36 7 chr21 43212502 43212640 -1694930 + (CTGGGG)n Simple_repeat Simple_repeat 1 142 0 184 217 22 0 chr21 43212675 43212767 -1694803 + (CTGGGG)n Simple_repeat Simple_repeat 1 94 0 224 208 267 20 chr21 43214215 43214316 -1693254 + MIR3 SINE MIR 31 156 -52 269 298 0 21 chr21 43214857 43214951 -1692619 - L1MB5 LINE L1 -1 6173 6082 799 303 20 40 chr21 43215047 43215372 -1692198 - L1MB5 LINE L1 -246 5938 5619 2078 196 52 0 chr21 43215372 43215776 -1691794 + MSTB LTR MaLR 1 425 -1 799 303 20 40 chr21 43215776 43215797 -1691773 - L1MB5 LINE L1 -565 5619 5599 348 317 61 0 chr21 43215816 43215980 -1691590 - L1M4c LINE L1 -4536 2110 1937 279 211 35 18 chr21 43215993 43216107 -1691463 + (TA)n Simple_repeat Simple_repeat 2 117 0 5057 208 127 26 chr21 43216119 43217869 -1689701 - L1M4c LINE L1 -4701 1945 14 5028 237 44 82 chr21 43217900 43218170 -1689400 - L1ME1 LINE L1 -20 6383 6104 213 39 0 0 chr21 43218170 43218196 -1689374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5028 237 44 82 chr21 43218196 43218594 -1688976 - L1ME1 LINE L1 -299 6104 5692 2469 47 7 3 chr21 43218594 43218895 -1688675 - AluY SINE Alu -9 302 1 5028 237 44 82 chr21 43218895 43219002 -1688568 - L1ME1 LINE L1 -711 5692 5582 1437 223 38 62 chr21 43219002 43219402 -1688168 - MLT1B LTR MaLR 0 390 1 5028 237 44 82 chr21 43219402 43221341 -1686229 - L1ME1 LINE L1 -821 5582 3548 924 272 52 12 chr21 43221337 43221741 -1685829 - L1ME1 LINE L1 -5954 442 23 * 247 192 58 67 chr21 43221735 43221839 -1685731 - L1ME4a LINE L1 0 6121 6019 * 384 263 117 0 chr21 43222892 43223029 -1684541 - MLT1D LTR MaLR -352 153 1 2604 152 18 32 chr21 43224005 43224372 -1683198 - MER41E LTR ERV1 0 512 152 2287 97 3 0 chr21 43224372 43224672 -1682898 - AluSx SINE Alu -11 301 1 2604 152 18 32 chr21 43224672 43224811 -1682759 - MER41E LTR ERV1 -360 152 13 215 213 0 21 chr21 43225854 43225901 -1681669 + G-rich Low_complexity Low_complexity 2 47 0 232 347 32 0 chr21 43227482 43227606 -1679964 - L1ME4a LINE L1 -2 6119 5992 243 200 18 0 chr21 43227733 43227788 -1679782 - L1M3 LINE L1 -583 5751 5696 633 290 82 4 chr21 43227815 43228046 -1679524 + MLT1K LTR MaLR 62 310 -278 1659 216 79 23 chr21 43228171 43228652 -1678918 + L1MB3 LINE L1 5330 5837 -346 203 218 58 46 chr21 43228857 43228944 -1678626 + G-rich Low_complexity Low_complexity 1 88 0 237 219 14 27 chr21 43229330 43229403 -1678167 + (CCCCAG)n Simple_repeat Simple_repeat 3 74 0 28 71 0 0 chr21 43229433 43229489 -1678081 + GC_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr21 43229578 43229612 -1677958 + GC_rich Low_complexity Low_complexity 1 34 0 381 274 11 0 chr21 43231015 43231110 -1676460 + LTR16C LTR ERVL 394 489 -2 265 329 13 32 chr21 43231301 43231456 -1676114 + L1ME LINE L1 5556 5707 -414 429 289 78 101 chr21 43233111 43233589 -1673981 + L1MEd LINE L1 419 878 -5241 1872 162 7 0 chr21 43233589 43233897 -1673673 + AluJb SINE Alu 1 310 -2 429 289 78 101 chr21 43233897 43234089 -1673481 + L1MEd LINE L1 878 1073 -5046 201 267 0 0 chr21 43234358 43234403 -1673167 + GA-rich Low_complexity Low_complexity 2 46 0 2219 112 0 6 chr21 43234426 43234738 -1672832 + AluSx SINE Alu 1 310 -2 3399 109 13 6 chr21 43234810 43236008 -1671562 - L1PA11 LINE L1 0 6174 4883 297 218 64 64 chr21 43236005 43236115 -1671455 + L1M4 LINE L1 4050 4159 -1987 * 617 308 127 14 chr21 43236115 43236407 -1671163 - MLT1J LTR MaLR -45 466 142 2331 85 0 0 chr21 43239400 43239695 -1667875 + AluSq SINE Alu 6 300 -13 413 220 46 0 chr21 43239695 43239804 -1667766 - MLT1J LTR MaLR -391 114 1 814 203 62 29 chr21 43242573 43242815 -1664755 + MER65A LTR ERV1 2 251 -194 210 147 0 0 chr21 43244137 43244171 -1663399 + (TC)n Simple_repeat Simple_repeat 1 34 0 588 143 0 0 chr21 43244950 43245048 -1662522 + (TCCTG)n Simple_repeat Simple_repeat 1 98 0 212 310 69 17 chr21 43245102 43245334 -1662236 - L2 LINE L2 -666 2648 2405 658 271 29 142 chr21 43246404 43246766 -1660804 + HAL1 LINE L1 946 1166 -1341 945 177 6 6 chr21 43246766 43246930 -1660640 + FRAM SINE Alu 2 165 -1 658 271 29 142 chr21 43246930 43247386 -1660184 + HAL1 LINE L1 1166 1672 -835 276 145 0 0 chr21 43247400 43247449 -1660121 - Alu SINE Alu -11 291 248 29 0 0 0 chr21 43248123 43248152 -1659418 + AT_rich Low_complexity Low_complexity 1 29 0 715 156 0 0 chr21 43248178 43248287 -1659283 - FLAM_C SINE Alu -33 110 2 2228 83 30 0 chr21 43248854 43249156 -1658414 + AluY SINE Alu 1 311 0 2008 128 0 3 chr21 43249432 43249730 -1657840 + AluSx SINE Alu 1 297 -15 1005 178 6 0 chr21 43249739 43249908 -1657662 + AluJb SINE Alu 140 309 -3 21 57 0 0 chr21 43250151 43250186 -1657384 + AT_rich Low_complexity Low_complexity 1 35 0 603 265 54 15 chr21 43252185 43252389 -1655181 - MER96B DNA MER1_type? -204 213 2 747 126 34 34 chr21 43252420 43252931 -1654639 + (TG)n Simple_repeat Simple_repeat 1 511 0 785 27 33 54 chr21 43252977 43253161 -1654409 + (TG)n Simple_repeat Simple_repeat 1 180 0 483 284 22 34 chr21 43253614 43253884 -1653686 + L1MC4 LINE L1 7792 7995 0 280 292 120 38 chr21 43254495 43254825 -1652745 + L1M4c LINE L1 1552 2019 -4363 737 256 31 5 chr21 43254986 43255237 -1652333 + L1ME2 LINE L1 5826 6096 -66 5906 182 39 7 chr21 43255252 43256347 -1651223 + L1MC1 LINE L1 4697 5862 -471 2095 196 0 5 chr21 43256347 43256714 -1650856 - MLT1A1 LTR MaLR 0 365 1 5906 182 39 7 chr21 43256714 43257197 -1650373 + L1MC1 LINE L1 5862 6328 -5 1977 141 7 0 chr21 43257314 43257613 -1649957 + AluSx SINE Alu 3 303 -9 738 269 127 40 chr21 43257796 43258221 -1649349 + HAL1b LINE L1 370 846 -502 2148 108 0 3 chr21 43258221 43258518 -1649052 + AluSq SINE Alu 1 296 -17 738 269 127 40 chr21 43258518 43258590 -1648980 + HAL1b LINE L1 846 910 -438 265 261 78 17 chr21 43260266 43260381 -1647189 + MLT1J1 LTR MaLR 38 159 -287 230 220 55 44 chr21 43260424 43260515 -1647055 + MLT1J1 LTR MaLR 242 333 -113 332 304 226 22 chr21 43261430 43261841 -1645729 - L1ME4a LINE L1 -235 5886 5392 340 299 66 30 chr21 43262238 43262405 -1645165 + MIR SINE MIR 80 252 -10 1929 132 14 0 chr21 43262929 43263216 -1644354 + AluJo SINE Alu 3 293 -19 909 192 36 7 chr21 43263269 43263476 -1644094 - MLT2B1 LTR ERVL -198 216 1 556 263 50 33 chr21 43264970 43265210 -1642360 + L1MEc LINE L1 29 272 -6124 2165 40 0 0 chr21 43266022 43266275 -1641295 + L1PA4 LINE L1 5903 6155 0 448 183 26 17 chr21 43267315 43267430 -1640140 - HAL1b LINE L1 -248 1100 985 391 307 72 32 chr21 43267681 43267977 -1639593 + L1MC/D LINE L1 4943 5267 -951 2277 97 0 31 chr21 43267977 43268298 -1639272 - AluSx SINE Alu -1 311 1 391 307 72 32 chr21 43268298 43268500 -1639070 + L1MC/D LINE L1 5267 5460 -758 437 279 167 29 chr21 43268518 43268758 -1638812 + L1MC/D LINE L1 5503 5775 -2033 432 245 6 31 chr21 43268860 43269179 -1638391 + G-rich Low_complexity Low_complexity 1 311 0 2117 124 0 7 chr21 43269275 43269581 -1637989 + AluSx SINE Alu 1 304 -8 227 297 54 77 chr21 43269807 43270029 -1637541 + L2 LINE L2 2939 3155 -117 2228 76 0 30 chr21 43270067 43270368 -1637202 - AluY SINE Alu -19 292 1 542 261 51 6 chr21 43270855 43271012 -1636558 + MER45C DNA AcHobo 41 204 -749 621 300 9 47 chr21 43271039 43271272 -1636298 + MER45C DNA AcHobo 728 951 -2 1239 241 11 0 chr21 43271363 43271624 -1635946 + Tigger7 DNA MER2_type 1 264 -469 1108 178 19 14 chr21 43271676 43271890 -1635680 + MLT2B3 LTR ERVL 321 535 -19 200 143 24 0 chr21 43271890 43271932 -1635638 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 364 246 0 0 chr21 43271934 43272003 -1635567 + Tigger7 DNA MER2_type 2519 2587 0 878 255 40 25 chr21 43272087 43272412 -1635158 + L1M4 LINE L1 4105 4434 -1712 2412 197 28 34 chr21 43272418 43272956 -1634614 + MLT2B3 LTR ERVL 1 535 -19 275 116 0 35 chr21 43272963 43273026 -1634544 + MLT2C1 LTR ERVL 351 390 -7 318 227 0 0 chr21 43273030 43273105 -1634465 + L1M4 LINE L1 4436 4510 -1636 1022 190 5 45 chr21 43273105 43273262 -1634308 + MLT1A1 LTR MaLR 1 148 -217 2273 90 0 3 chr21 43273262 43273561 -1634009 + AluSg SINE Alu 1 298 -12 1022 190 5 45 chr21 43273561 43273624 -1633946 + MLT1A1 LTR MaLR 148 212 -153 901 234 26 0 chr21 43273622 43273814 -1633756 - MLT2B3 LTR ERVL -79 475 279 * 700 165 118 0 chr21 43273812 43273939 -1633631 + MLT1A1 LTR MaLR 224 365 0 * 924 256 95 7 chr21 43273939 43274244 -1633326 + L1M4 LINE L1 4506 4837 -1309 1559 176 3 24 chr21 43274249 43274539 -1633031 + AluJb SINE Alu 3 286 -26 191 204 19 0 chr21 43274670 43274724 -1632846 + C-rich Low_complexity Low_complexity 5 59 0 3229 296 77 19 chr21 43276137 43277896 -1629674 + L1ME3A LINE L1 3796 5628 -534 999 287 31 19 chr21 43277964 43278281 -1629289 + L1ME3A LINE L1 5850 6170 0 235 284 88 47 chr21 43278915 43279130 -1628440 - L1M4 LINE L1 -1706 4440 4217 330 188 0 0 chr21 43279209 43279273 -1628297 - FRAM SINE Alu -70 96 33 470 343 139 18 chr21 43279273 43279763 -1627807 + L2 LINE L2 2031 2579 -735 283 230 40 27 chr21 43279967 43280041 -1627529 - MER58C DNA MER1_type -14 201 127 21 0 0 0 chr21 43281186 43281207 -1626363 + AT_rich Low_complexity Low_complexity 1 21 0 368 237 73 53 chr21 43283098 43283248 -1624322 + MLT1G1 LTR MaLR 369 582 0 269 209 26 173 chr21 43283564 43283755 -1623815 - AluSp SINE Alu -5 298 136 191 30 0 61 chr21 43284187 43284220 -1623350 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 209 238 48 27 chr21 43284403 43284550 -1623020 + G-rich Low_complexity Low_complexity 4 153 0 440 176 19 37 chr21 43284592 43284700 -1622870 + FLAM_A SINE Alu 15 120 -22 27 49 0 0 chr21 43284938 43284979 -1622591 + GC_rich Low_complexity Low_complexity 1 41 0 321 128 21 21 chr21 43284979 43285073 -1622497 + (CGG)n Simple_repeat Simple_repeat 1 94 0 219 227 39 23 chr21 43285148 43285276 -1622294 + (CGCGG)n Simple_repeat Simple_repeat 1 130 0 21 0 0 0 chr21 43285939 43285960 -1621610 + GC_rich Low_complexity Low_complexity 1 21 0 321 224 10 61 chr21 43287239 43287337 -1620233 - L2 LINE L2 -1 3271 3179 2399 71 0 6 chr21 43287825 43288136 -1619434 + AluY SINE Alu 1 309 -2 348 336 111 18 chr21 43288742 43288959 -1618611 - L2 LINE L2 -2 3311 3075 493 304 100 25 chr21 43288990 43289270 -1618300 - L2 LINE L2 -345 2969 2669 * 774 215 54 15 chr21 43289260 43289485 -1618085 - MIR SINE MIR -24 238 4 183 289 231 0 chr21 43289485 43289589 -1617981 - L2 LINE L2 -645 2669 2542 809 251 85 18 chr21 43289595 43289878 -1617692 - HsTC2 DNA Tc2 0 1900 1599 473 257 168 23 chr21 43289978 43290192 -1617378 + MIR SINE MIR 18 262 0 864 259 209 17 chr21 43290198 43290830 -1616740 - L2 LINE L2 -990 2324 1572 24 0 0 0 chr21 43291095 43291119 -1616451 + AT_rich Low_complexity Low_complexity 1 24 0 227 315 108 0 chr21 43291605 43291716 -1615854 - L2 LINE L2 -20 3293 3171 1687 156 3 0 chr21 43291788 43292071 -1615499 + Tigger5 DNA MER2_type 2040 2323 0 343 156 234 0 chr21 43292690 43292767 -1614803 - Tigger5 DNA MER2_type -1 2322 2228 * 514 226 0 0 chr21 43292766 43292868 -1614702 - Tigger5 DNA MER2_type -2221 102 1 240 317 70 28 chr21 43292928 43293070 -1614500 - MIR SINE MIR -18 244 97 273 241 83 83 chr21 43293084 43293217 -1614353 - MIR SINE MIR -1 261 129 * 440 326 64 5 chr21 43293189 43293376 -1614194 + L2 LINE L2 2567 2764 -550 224 303 138 9 chr21 43293542 43293651 -1613919 + L2 LINE L2 3191 3313 0 1901 142 3 20 chr21 43294138 43294441 -1613129 - AluJb SINE Alu -14 298 1 275 341 100 12 chr21 43294468 43294638 -1612932 + MIR3 SINE MIR 2 186 -22 375 297 114 36 chr21 43295493 43295712 -1611858 - LTR67 LTR ERVL -235 322 87 1100 278 92 19 chr21 43296796 43297275 -1610295 - L1MB7 LINE L1 -37 6147 5634 1923 237 117 68 chr21 43297604 43299780 -1607790 + L1MC3 LINE L1 5591 7691 0 232 260 92 9 chr21 43299876 43300103 -1607467 - L1MB7 LINE L1 -943 5203 4958 695 281 76 42 chr21 43300327 43300708 -1606862 - L1MB7 LINE L1 -1956 4190 3797 442 214 0 0 chr21 43300896 43300980 -1606590 + MER63 DNA MER1_type 677 760 -76 299 241 0 0 chr21 43300978 43301036 -1606534 + MER63 DNA MER1_type 984 1041 -20 * 248 313 222 0 chr21 43301500 43301599 -1605971 - L2 LINE L2 0 3313 3193 23 33 0 0 chr21 43303250 43303280 -1604290 + AT_rich Low_complexity Low_complexity 1 30 0 236 420 28 0 chr21 43305413 43305594 -1601976 + L2 LINE L2 1805 1990 -1324 2072 80 56 0 chr21 43307193 43307480 -1600090 - AluY SINE Alu -8 303 1 331 266 144 6 chr21 43308340 43308513 -1599057 + L2 LINE L2 2305 2501 -813 389 239 239 28 chr21 43308981 43309161 -1598409 + MIR SINE MIR 24 241 -21 1646 92 107 32 chr21 43309822 43310103 -1597467 + AluSx SINE Alu 1 302 -10 200 209 0 0 chr21 43311430 43311473 -1596097 + (CAG)n Simple_repeat Simple_repeat 3 45 0 1710 135 17 30 chr21 43312339 43312636 -1594934 - AluJo SINE Alu -19 293 1 247 217 76 33 chr21 43312763 43312855 -1594715 - MLT1K LTR MaLR -492 96 1 2440 170 191 43 chr21 43312926 43313691 -1593879 + L1MC3 LINE L1 6766 7643 -142 2521 116 61 12 chr21 43313693 43314143 -1593427 - MER1A DNA MER1_type 0 529 1 601 177 32 0 chr21 43314149 43314273 -1593297 + L1MC3 LINE L1 7657 7784 -1 289 232 268 18 chr21 43314580 43314748 -1592822 + MER69 DNA AcHobo 158 367 -2159 333 0 0 0 chr21 43315524 43315561 -1592009 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1943 128 0 3 chr21 43315564 43315846 -1591724 - AluSx SINE Alu -31 281 1 638 300 136 38 chr21 43317385 43318303 -1589267 + L1MC4 LINE L1 4149 5156 -990 1308 138 30 0 chr21 43318308 43318511 -1589059 + AluJb SINE Alu 83 291 -21 301 263 304 12 chr21 43318595 43318766 -1588804 + L1MC4 LINE L1 5264 5484 -2324 186 316 96 44 chr21 43319408 43319544 -1588026 - MIR SINE MIR -96 166 24 569 256 0 6 chr21 43319583 43319763 -1587807 + (TG)n Simple_repeat Simple_repeat 1 179 0 249 219 295 0 chr21 43320014 43320119 -1587451 + L2 LINE L2 3137 3272 0 618 246 104 46 chr21 43321725 43321742 -1585828 - L1ME3A LINE L1 -224 5946 5931 1707 185 25 0 chr21 43321742 43322061 -1585509 - L1MC1 LINE L1 -2 6331 6005 618 246 104 46 chr21 43322061 43322303 -1585267 - L1ME3A LINE L1 -239 5931 5672 261 242 8 58 chr21 43322441 43322561 -1585009 - L1ME3A LINE L1 -674 5492 5379 342 269 19 9 chr21 43323175 43323283 -1584287 + MER94 DNA DNA 14 122 -12 2194 85 0 0 chr21 43323591 43323892 -1583678 + AluSg SINE Alu 1 301 0 306 356 0 0 chr21 43323895 43323985 -1583585 + L1MC4 LINE L1 6614 6703 -1339 415 340 86 22 chr21 43325143 43325375 -1582195 - MIR SINE MIR 0 262 16 2794 101 0 3 chr21 43326964 43327339 -1580231 - THE1C LTR MaLR 0 375 2 468 326 17 37 chr21 43328794 43329088 -1578482 - HAL1 LINE L1 -769 1738 1451 1499 171 0 4 chr21 43329552 43329810 -1577760 - AluJo SINE Alu -26 286 30 243 354 51 19 chr21 43331364 43331621 -1575949 - L1P LINE L1 -2291 3855 3591 364 330 94 41 chr21 43331670 43331988 -1575582 - L1MEc LINE L1 -4638 1758 1424 368 247 13 51 chr21 43332029 43332187 -1575383 - L1MEc LINE L1 -5045 1160 1009 198 0 0 0 chr21 43333723 43333745 -1573825 + (TG)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr21 43333745 43333768 -1573802 + AT_rich Low_complexity Low_complexity 1 23 0 1517 192 0 4 chr21 43333768 43334049 -1573521 - AluJo SINE Alu -26 286 7 1582 193 0 0 chr21 43334054 43334344 -1573226 - AluJb SINE Alu -15 297 8 271 222 42 0 chr21 43334418 43334490 -1573080 - L1ME2 LINE L1 -202 5962 5888 259 328 52 10 chr21 43334487 43334679 -1572891 - L1M4 LINE L1 -2261 3885 3686 * 1717 174 0 16 chr21 43334818 43335128 -1572442 - AluJb SINE Alu -7 305 1 1648 167 7 17 chr21 43335198 43335217 -1572353 - AluJb SINE Alu -16 296 278 438 20 0 0 chr21 43335217 43335268 -1572302 + (TG)n Simple_repeat Simple_repeat 1 51 0 1648 167 7 17 chr21 43335268 43335547 -1572023 - AluJb SINE Alu -34 278 1 270 194 30 15 chr21 43335677 43335744 -1571826 - MLT1E1 LTR MaLR -11 579 512 231 293 90 43 chr21 43335921 43336109 -1571461 - MLT1H1 LTR MaLR -344 211 15 1037 297 69 19 chr21 43336190 43336826 -1570744 - L1M4 LINE L1 -2898 3248 2581 317 326 50 28 chr21 43336900 43337081 -1570489 - MIR SINE MIR -5 257 73 252 257 48 48 chr21 43337325 43337430 -1570140 - MIR SINE MIR -88 120 16 1913 127 7 0 chr21 43339420 43339696 -1567874 + AluSx SINE Alu 22 299 -13 350 241 77 59 chr21 43341423 43341643 -1565927 - MER20B DNA MER1_type 0 783 560 283 261 34 86 chr21 43343158 43343392 -1564178 - MER31-int LTR ERV1 -1207 3729 3508 1540 200 119 10 chr21 43343649 43344059 -1563511 - MLT1E1 LTR MaLR -158 496 42 21 0 0 0 chr21 43345192 43345213 -1562357 + AT_rich Low_complexity Low_complexity 1 21 0 433 204 102 0 chr21 43345505 43345613 -1561957 + MER58C DNA MER1_type 59 177 -38 264 126 138 46 chr21 43347041 43347128 -1560442 - L2 LINE L2 -2 3270 3176 251 260 14 0 chr21 43348603 43348676 -1558894 - MLT1J LTR MaLR 0 511 438 2181 136 0 0 chr21 43349415 43349725 -1557845 - AluSx SINE Alu -2 310 1 411 228 38 95 chr21 43350404 43350438 -1557132 - L1ME1 LINE L1 -5 6161 6127 2073 98 4 0 chr21 43350438 43350704 -1556866 - AluSq SINE Alu -2 311 45 411 228 38 95 chr21 43350704 43350827 -1556743 - L1ME1 LINE L1 -39 6127 6013 409 250 43 0 chr21 43350834 43350950 -1556620 - MER90 LTR ERV1 -428 186 66 213 94 0 0 chr21 43351125 43351157 -1556413 + (TG)n Simple_repeat Simple_repeat 1 32 0 27 62 0 0 chr21 43351296 43351344 -1556226 + AT_rich Low_complexity Low_complexity 1 48 0 1894 138 10 27 chr21 43351414 43351711 -1555859 + AluJb SINE Alu 1 292 -20 223 346 55 0 chr21 43353292 43353419 -1554151 - MIR SINE MIR -122 140 7 348 265 218 0 chr21 43353743 43353977 -1553593 + L2 LINE L2 2252 2536 -778 661 290 118 47 chr21 43353979 43354588 -1552982 + L2 LINE L2 2650 3313 0 1116 233 178 10 chr21 43355699 43356188 -1551382 - MER74B LTR ERVL -51 571 1 1312 232 48 17 chr21 43359888 43360301 -1547269 - Zaphod DNA AcHobo -2 4029 3604 392 142 226 9 chr21 43360359 43360465 -1547105 + MER58C DNA MER1_type 78 206 -9 566 161 96 84 chr21 43360472 43360507 -1547063 - Zaphod DNA AcHobo -3041 990 957 2067 113 44 10 chr21 43360507 43360800 -1546770 + AluSx SINE Alu 1 303 -9 566 161 96 84 chr21 43360800 43361086 -1546484 - Zaphod DNA AcHobo -3074 957 665 1336 167 29 13 chr21 43361110 43361781 -1545789 + MER54B LTR ERVL 1 791 -2 * 1343 245 156 25 chr21 43361781 43362282 -1545288 - Zaphod DNA AcHobo -3386 645 77 605 194 24 0 chr21 43366024 43366194 -1541376 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 691 127 28 39 chr21 43366212 43366393 -1541177 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 760 122 56 17 chr21 43366414 43366873 -1540697 + (TCCA)n Simple_repeat Simple_repeat 1 476 0 732 131 42 28 chr21 43366889 43367174 -1540396 + (TCCA)n Simple_repeat Simple_repeat 1 289 0 263 292 93 31 chr21 43368295 43368456 -1539114 - MLT1J2 LTR MaLR -139 311 141 234 154 123 0 chr21 43369502 43369567 -1538003 - L1ME4a LINE L1 0 6121 6049 2020 134 53 34 chr21 43369594 43369951 -1537619 - THE1B LTR MaLR 0 364 1 6128 168 159 31 chr21 43371611 43373089 -1534481 + MER52A LTR ERV1 1 1755 0 462 330 85 42 chr21 43376888 43377242 -1530328 - L1M4 LINE L1 -1186 4960 4592 2173 90 45 0 chr21 43377977 43378265 -1529305 + AluSx SINE Alu 1 301 -11 349 58 19 0 chr21 43378266 43378318 -1529252 - L1MD2 LINE L1 -14 6345 6293 2201 203 71 22 chr21 43378318 43379261 -1528309 - L1MC/D LINE L1 -562 6074 5089 1692 245 105 17 chr21 43379256 43380168 -1527402 - L1MDa LINE L1 -5341 1199 31 * 529 223 117 58 chr21 43380531 43380840 -1526730 - L1MC5 LINE L1 -24 7937 7611 209 278 0 19 chr21 43380869 43380923 -1526647 + L2 LINE L2 3211 3263 -9 222 149 30 30 chr21 43381077 43381144 -1526426 + (TA)n Simple_repeat Simple_repeat 2 68 0 2161 74 0 0 chr21 43384928 43385185 -1522385 + AluSx SINE Alu 1 257 -55 429 90 0 0 chr21 43385190 43385257 -1522313 + (CATA)n Simple_repeat Simple_repeat 2 68 0 21 57 0 0 chr21 43385956 43385991 -1521579 + AT_rich Low_complexity Low_complexity 1 35 0 260 27 27 0 chr21 43392088 43392125 -1515445 + (TTG)n Simple_repeat Simple_repeat 2 39 0 434 331 24 6 chr21 43392281 43392447 -1515123 + MIR SINE MIR 77 245 -17 389 290 87 33 chr21 43394566 43394749 -1512821 - L1ME4a LINE L1 -3 6118 5926 265 239 39 17 chr21 43394728 43394843 -1512727 - L1ME4a LINE L1 -2 8040 5966 * 2278 123 0 7 chr21 43394958 43395260 -1512310 - AluJb SINE Alu -12 300 1 325 284 46 26 chr21 43397068 43397262 -1510308 - L1P5 LINE L1 -701 5453 5256 6074 200 51 14 chr21 43397303 43398624 -1508946 - L1 LINE L1 -1250 4720 3344 2320 110 0 0 chr21 43398624 43398916 -1508654 - AluSx SINE Alu -20 292 1 6074 200 51 14 chr21 43398916 43398981 -1508589 - L1 LINE L1 -2626 3344 3283 4732 194 110 60 chr21 43399005 43399325 -1508245 - L1 LINE L1 -3816 2154 1852 2324 132 28 28 chr21 43399325 43399688 -1507882 - THE1B LTR MaLR 0 364 2 4732 194 110 60 chr21 43399688 43401167 -1506403 - L1 LINE L1 -4118 1852 365 429 298 44 85 chr21 43401278 43401644 -1505926 - L1 LINE L1 -5536 355 5 429 275 100 32 chr21 43401853 43402307 -1505263 - L1M4 LINE L1 -2057 4089 3594 288 0 0 0 chr21 43402359 43402391 -1505179 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 0 0 0 chr21 43402391 43402421 -1505149 + (T)n Simple_repeat Simple_repeat 1 30 0 669 248 53 16 chr21 43402826 43403108 -1504462 + MLT1H1 LTR MaLR 9 265 -290 3501 233 75 26 chr21 43403220 43404289 -1503281 + L1ME1 LINE L1 3261 4381 -1765 1556 204 57 0 chr21 43404298 43404631 -1502939 + L1ME1 LINE L1 4448 4799 -1347 1814 158 42 6 chr21 43404640 43404970 -1502600 - L1MC1 LINE L1 -12 6321 5980 4372 197 47 10 chr21 43405072 43406725 -1500845 - L1MC1 LINE L1 -301 6032 4315 2516 219 92 62 chr21 43406706 43407422 -1500148 + L1ME1 LINE L1 4845 5538 -628 * 1720 143 85 0 chr21 43407422 43407694 -1499876 + AluSx SINE Alu 1 295 -17 2516 219 92 62 chr21 43407694 43407729 -1499841 + L1ME1 LINE L1 5538 5570 -596 2345 104 0 0 chr21 43407729 43408026 -1499544 + AluSg SINE Alu 1 297 -13 2516 219 92 62 chr21 43408026 43408550 -1499020 + L1ME1 LINE L1 5570 6160 -6 421 329 35 75 chr21 43408627 43409007 -1498563 + L1M4 LINE L1 3100 3447 -2699 321 26 0 0 chr21 43409007 43409045 -1498525 + (CA)n Simple_repeat Simple_repeat 1 38 0 421 329 35 75 chr21 43409045 43409290 -1498280 + L1M4 LINE L1 3447 3700 -2446 232 304 0 25 chr21 43409613 43409692 -1497878 - MLT1J LTR MaLR -59 452 376 671 243 84 50 chr21 43410963 43411321 -1496249 - MER89 LTR ERV1 0 559 190 355 250 18 27 chr21 43412120 43412232 -1495338 - L2 LINE L2 0 3313 3203 229 311 106 7 chr21 43412713 43412864 -1494706 - L2 LINE L2 -722 2592 2427 843 180 52 6 chr21 43414316 43414488 -1493082 - Tigger7 DNA MER2_type -1 2486 2307 * 1207 227 133 0 chr21 43414470 43414748 -1492822 - Tigger7 DNA MER2_type -409 324 10 1803 173 0 10 chr21 43415498 43415799 -1491771 + AluJb SINE Alu 14 311 -1 2539 93 0 0 chr21 43417071 43417383 -1490187 - AluSx SINE Alu 0 312 1 513 147 0 0 chr21 43419115 43419210 -1488360 + (TG)n Simple_repeat Simple_repeat 1 95 0 335 342 87 16 chr21 43420719 43420903 -1486667 + L3 LINE CR1 1373 1569 -8 21 0 0 0 chr21 43422527 43422548 -1485022 + AT_rich Low_complexity Low_complexity 1 21 0 268 298 87 0 chr21 43423465 43423569 -1484001 - L2 LINE L2 -16 3297 3185 232 356 17 8 chr21 43423632 43423750 -1483820 + MER5B DNA MER1_type 58 176 -2 23 0 0 0 chr21 43423857 43423880 -1483690 + AT_rich Low_complexity Low_complexity 1 23 0 3090 255 33 14 chr21 43423900 43425417 -1482153 - L1ME1 LINE L1 -5 6230 4689 1028 197 8 52 chr21 43425418 43425550 -1482020 - L1ME1 LINE L1 -1997 4218 4101 1886 186 0 0 chr21 43425550 43425857 -1481713 - AluJo SINE Alu -5 307 1 1028 197 8 52 chr21 43425857 43425973 -1481597 - L1ME1 LINE L1 -2114 4101 3981 654 206 8 0 chr21 43425998 43426124 -1481446 + FLAM_A SINE Alu 8 134 -8 4108 244 83 28 chr21 43426179 43428944 -1478626 - L1ME1 LINE L1 -2313 3902 977 487 319 105 8 chr21 43428933 43429190 -1478380 - L1ME1 LINE L1 -5876 520 239 * 3500 129 26 72 chr21 43429602 43429753 -1477817 - HSMAR2 DNA Mariner 0 1302 1146 2159 110 3 3 chr21 43429753 43430043 -1477527 + AluSc SINE Alu 1 290 -19 3500 129 26 72 chr21 43430043 43430572 -1476998 - HSMAR2 DNA Mariner -156 1146 653 1540 92 9 0 chr21 43430570 43430787 -1476783 - HSMAR2 DNA Mariner -1081 221 3 * 225 0 0 0 chr21 43435580 43435605 -1471965 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1949 247 107 11 chr21 43438536 43439309 -1468261 - MER63C DNA MER1_type -54 876 1 2183 115 0 0 chr21 43440077 43440358 -1467212 + AluSg SINE Alu 5 286 -20 207 0 0 0 chr21 43440358 43440381 -1467189 + (CA)n Simple_repeat Simple_repeat 2 24 0 2570 60 0 0 chr21 43440394 43440694 -1466876 + AluY SINE Alu 1 300 -11 21 57 0 0 chr21 43441192 43441227 -1466343 + AT_rich Low_complexity Low_complexity 1 35 0 2671 27 7 0 chr21 43441368 43441669 -1465901 - AluY SINE Alu -8 303 1 2503 71 0 10 chr21 43441697 43442007 -1465563 + AluSx SINE Alu 1 307 -5 230 173 12 111 chr21 43442162 43442243 -1465327 - LTR37A LTR ERV1 -54 372 300 424 298 101 10 chr21 43442701 43442899 -1464671 + LTR50 LTR ERVL 1 216 -579 3193 230 114 48 chr21 43443068 43443114 -1464456 + Charlie2a DNA MER1_type 1103 1145 -1717 1587 166 61 18 chr21 43443114 43443391 -1464179 - AluJo SINE Alu -23 289 1 3193 230 114 48 chr21 43443391 43444690 -1462880 + Charlie2a DNA MER1_type 1145 2537 -325 292 259 0 35 chr21 43444740 43444825 -1462745 + G-rich Low_complexity Low_complexity 6 87 0 4288 175 44 8 chr21 43447356 43448545 -1459025 + L1MC1 LINE L1 4789 6024 -309 1836 119 43 11 chr21 43448545 43448823 -1458747 - AluSq SINE Alu -26 287 1 3038 159 47 6 chr21 43448823 43449893 -1457677 + L1M1 LINE L1 3202 4304 -3261 * 7054 161 38 12 chr21 43449887 43450791 -1456779 + L1M1 LINE L1 5291 6257 -1443 2042 118 0 10 chr21 43450791 43451088 -1456482 + AluSx SINE Alu 1 294 -18 7054 161 38 12 chr21 43451088 43451808 -1455762 + L1M1 LINE L1 6257 6957 -743 3832 193 34 88 chr21 43451924 43452801 -1454769 + L1M2 LINE L1 1175 2097 -4752 1778 176 20 0 chr21 43452801 43453102 -1454468 - AluJb SINE Alu -5 307 1 3832 193 34 88 chr21 43453102 43453164 -1454406 + L1M2 LINE L1 2097 2161 -4688 2104 102 7 0 chr21 43453164 43453457 -1454113 + AluSp SINE Alu 1 295 -18 2428 87 3 0 chr21 43453458 43453770 -1453800 + AluSp SINE Alu 1 313 0 3832 193 34 88 chr21 43453770 43453947 -1453623 + L1M2 LINE L1 2160 2234 -4615 352 289 78 31 chr21 43453947 43454075 -1453495 - L1MDa LINE L1 -4695 1434 1301 695 240 17 57 chr21 43454076 43454376 -1453194 - L1MDa LINE L1 -4864 1255 968 449 320 71 74 chr21 43454389 43454686 -1452884 - L1MDa LINE L1 -5383 736 441 371 74 0 0 chr21 43454708 43454762 -1452808 + U2 snRNA snRNA 7 60 -128 305 114 0 150 chr21 43456092 43456259 -1451311 + (TGGGGG)n Simple_repeat Simple_repeat 3 144 0 2335 75 3 0 chr21 43457726 43458020 -1449550 + AluSp SINE Alu 1 295 -18 371 293 75 38 chr21 43458094 43458333 -1449237 - L1ME LINE L1 -298 5823 5576 502 314 86 0 chr21 43458603 43458823 -1448747 - MIR SINE MIR -3 259 21 351 244 223 51 chr21 43459332 43459529 -1448041 + MLT1E2 LTR MaLR 52 282 -344 * 494 298 0 0 chr21 43459526 43459657 -1447913 + MLT1E2 LTR MaLR 387 517 -109 1399 316 118 32 chr21 43459873 43460210 -1447360 - L1MEd LINE L1 -861 1629 1322 1715 157 0 34 chr21 43460210 43460503 -1447067 + AluJo SINE Alu 18 300 -12 1399 316 118 32 chr21 43460503 43462011 -1445559 - L1MEd LINE L1 -1168 1322 224 578 172 8 47 chr21 43463346 43463474 -1444096 + MLT1B LTR MaLR 7 129 -261 685 261 83 12 chr21 43463539 43463792 -1443778 + MLT1B LTR MaLR 106 376 -14 394 239 16 23 chr21 43464143 43464271 -1443299 - MLT1G LTR MaLR 0 610 482 434 195 89 16 chr21 43464857 43464980 -1442590 + MLT1A1 LTR MaLR 1 132 -233 473 222 0 6 chr21 43465354 43465521 -1442049 + GA-rich Low_complexity Low_complexity 1 166 0 214 224 13 26 chr21 43465526 43465602 -1441968 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 274 278 60 38 chr21 43466342 43466475 -1441095 + MLT1K LTR MaLR 444 579 -9 524 367 54 40 chr21 43470777 43471519 -1436051 + MER57A-int LTR ERV1 2079 2830 -1817 294 208 94 31 chr21 43471655 43471751 -1435819 + MER57A-int LTR ERV1 4770 4871 0 2259 97 0 0 chr21 43472022 43472321 -1435249 + AluSx SINE Alu 1 299 -13 811 253 175 28 chr21 43473045 43473365 -1434205 + MER57A LTR ERV1 1 367 -36 1786 113 16 68 chr21 43473369 43473679 -1433891 - AluSx SINE Alu -17 295 2 294 200 9 91 chr21 43475141 43475251 -1432319 + G-rich Low_complexity Low_complexity 6 106 0 294 29 0 0 chr21 43478477 43478512 -1429058 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 8315 28 6 260 chr21 43478521 43480317 -1427253 + SVA Other Other 47 1386 0 538 229 79 0 chr21 43480779 43480919 -1426651 + L1PB1 LINE L1 54 204 -6659 * 12478 192 53 12 chr21 43480910 43484731 -1422839 + L1PB1 LINE L1 1113 5287 -1580 180 0 0 0 chr21 43484731 43484751 -1422819 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 12478 192 53 12 chr21 43484751 43486401 -1421169 + L1PB1 LINE L1 5287 6867 0 2248 103 0 0 chr21 43486416 43486718 -1420852 + AluSx SINE Alu 1 302 -10 186 128 0 0 chr21 43486724 43486763 -1420807 + (TAAAAA)n Simple_repeat Simple_repeat 4 42 0 21 0 0 0 chr21 43489598 43489619 -1417951 + AT_rich Low_complexity Low_complexity 1 21 0 2171 85 0 22 chr21 43489619 43489937 -1417633 + AluY SINE Alu 1 311 0 273 325 119 0 chr21 43491398 43491549 -1416021 - L1M4 LINE L1 -926 5220 5052 290 335 0 0 chr21 43493691 43493858 -1413712 + G-rich Low_complexity Low_complexity 1 167 0 966 212 111 3 chr21 43496717 43497107 -1410463 - Charlie1b DNA MER1_type -4 519 79 363 246 14 40 chr21 43497648 43498003 -1409567 + C-rich Low_complexity Low_complexity 1 345 0 323 290 6 38 chr21 43498025 43498208 -1409362 + C-rich Low_complexity Low_complexity 4 180 0 23 0 0 0 chr21 43498403 43498426 -1409144 + GC_rich Low_complexity Low_complexity 1 23 0 232 224 35 12 chr21 43498758 43498874 -1408696 + (CGGGG)n Simple_repeat Simple_repeat 1 118 0 628 278 138 0 chr21 43499389 43499709 -1407861 + L1M4 LINE L1 3401 3764 -2382 4545 161 84 9 chr21 43499720 43500560 -1407010 - MER4D LTR ERV1 0 903 1 943 174 5 5 chr21 43500664 43500848 -1406722 - LTR2 LTR ERV1 0 449 266 268 316 0 76 chr21 43500844 43501015 -1406555 - LTR2 LTR ERV1 -289 160 3 * 518 216 53 21 chr21 43501102 43501292 -1406278 + L1M4 LINE L1 5100 5295 -851 237 279 156 13 chr21 43501381 43501535 -1406035 + L1M4 LINE L1 5413 5588 -596 1707 194 46 35 chr21 43501537 43501970 -1405600 - LTR42 LTR ERVL 0 495 58 501 214 26 32 chr21 43506218 43506372 -1401198 - MLT1A2 LTR MaLR -15 359 207 397 189 11 22 chr21 43506357 43506447 -1401123 - MLT1A2 LTR MaLR -285 89 1 * 256 273 45 0 chr21 43506488 43506576 -1400994 - L1M4 LINE L1 -1174 4972 4881 683 322 102 44 chr21 43506763 43507244 -1400326 - L1M4 LINE L1 -1481 4665 4157 997 253 4 9 chr21 43507307 43507532 -1400038 + MER58A DNA MER1_type 1 224 0 226 328 122 22 chr21 43507637 43507817 -1399753 - L1M4 LINE L1 -2207 3939 3742 2680 116 80 5 chr21 43507925 43508323 -1399247 + MSTA LTR MaLR 1 428 0 589 326 60 9 chr21 43508391 43508624 -1398946 - MIR SINE MIR 0 262 18 403 313 5 104 chr21 43508676 43508806 -1398764 - L1M4 LINE L1 -2610 3536 3429 2002 116 32 29 chr21 43508806 43509117 -1398453 - AluSx SINE Alu 0 312 1 403 313 5 104 chr21 43509117 43509178 -1398392 - L1M4 LINE L1 -2717 3429 3364 1461 149 21 82 chr21 43509686 43510014 -1397556 + AluJo SINE Alu 1 308 -4 643 260 101 0 chr21 43514138 43514426 -1393144 + MLT1B LTR MaLR 7 323 -67 1369 265 16 38 chr21 43515339 43515712 -1391858 + MLT1A1 LTR MaLR 1 365 0 316 176 52 0 chr21 43515790 43515878 -1391692 - L1MC4 LINE L1 0 8042 7904 2146 98 0 14 chr21 43515915 43516210 -1391360 - AluSx SINE Alu 0 312 22 965 287 167 14 chr21 43516228 43516856 -1390714 - L1MC4 LINE L1 -422 7620 6897 241 348 31 0 chr21 43518167 43518328 -1389242 + (CA)n Simple_repeat Simple_repeat 2 167 0 268 333 45 0 chr21 43519708 43519840 -1387730 + MLT1B LTR MaLR 323 460 -7 252 307 0 0 chr21 43520600 43520779 -1386791 + (CA)n Simple_repeat Simple_repeat 2 180 0 214 250 0 0 chr21 43520808 43520856 -1386714 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 106 0 0 chr21 43521450 43521743 -1385827 + AluSq SINE Alu 9 301 -12 748 234 28 83 chr21 43521743 43521971 -1385599 + MLT2B1 LTR ERVL 201 464 -56 750 175 22 15 chr21 43522120 43522257 -1385313 - L1MC1 LINE L1 0 6333 6196 315 0 0 0 chr21 43522282 43522317 -1385253 + (CA)n Simple_repeat Simple_repeat 2 36 0 483 48 0 0 chr21 43522384 43522446 -1385124 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 4828 206 37 9 chr21 43522480 43523945 -1383625 + L1MC1 LINE L1 4828 6333 0 497 108 12 0 chr21 43524145 43524228 -1383342 + L1PA10 LINE L1 3418 3501 -2645 6269 116 5 4 chr21 43524316 43525327 -1382243 - L1PA10 LINE L1 -1760 4386 3375 6369 142 32 0 chr21 43525327 43527079 -1380491 + L1PA10 LINE L1 4391 6168 0 302 272 54 27 chr21 43527441 43527588 -1379982 - MER58C DNA MER1_type 0 215 65 244 233 212 14 chr21 43527642 43527788 -1379782 + MER5A DNA MER1_type 9 183 -6 402 204 43 0 chr21 43527918 43528011 -1379559 - MER5A DNA MER1_type -80 109 13 208 208 69 56 chr21 43531177 43531249 -1376321 + MER5A DNA MER1_type 17 89 -100 335 169 157 11 chr21 43532070 43532159 -1375411 - MER58B DNA MER1_type 0 341 240 1921 128 3 3 chr21 43532396 43532678 -1374892 + AluSx SINE Alu 1 282 -30 251 280 65 0 chr21 43532696 43532789 -1374781 - L1MCa LINE L1 -4478 1948 1850 253 279 0 0 chr21 43537565 43537626 -1369944 + L2 LINE L2 3002 3062 -210 322 276 0 41 chr21 43537705 43537803 -1369767 - L2 LINE L2 -18 3295 3202 195 212 0 0 chr21 43538553 43538586 -1368984 + MIR SINE MIR 117 149 -113 861 229 0 10 chr21 43538935 43539127 -1368443 - MER66B LTR ERV1 -270 216 27 1538 221 43 8 chr21 43539374 43539749 -1367821 - MLT1B LTR MaLR -2 388 1 339 211 34 88 chr21 43541829 43541976 -1365594 + MER96B DNA MER1_type? 256 394 -23 352 286 7 20 chr21 43542532 43542679 -1364891 + G-rich Low_complexity Low_complexity 4 148 0 251 211 11 0 chr21 43542873 43542968 -1364602 + (TG)n Simple_repeat Simple_repeat 2 97 0 582 184 0 0 chr21 43542979 43543153 -1364417 + (TG)n Simple_repeat Simple_repeat 1 174 0 314 250 6 0 chr21 43543209 43543377 -1364193 + (TG)n Simple_repeat Simple_repeat 2 170 0 296 288 96 10 chr21 43544200 43544398 -1363172 + L2 LINE L2 2852 3066 -247 237 277 60 12 chr21 43544427 43544510 -1363060 + L2 LINE L2 3176 3262 -51 280 292 0 34 chr21 43545603 43545781 -1361789 + C-rich Low_complexity Low_complexity 4 175 0 787 239 60 30 chr21 43547597 43547865 -1359705 + MLT1F LTR MaLR 267 542 0 1723 215 84 25 chr21 43547961 43548402 -1359168 + MLT1C LTR MaLR 1 467 0 2263 109 0 3 chr21 43548433 43548744 -1358826 + AluSq SINE Alu 3 312 -1 2355 65 0 0 chr21 43549582 43549874 -1357696 - AluY SINE Alu -19 292 1 673 239 184 21 chr21 43550305 43550544 -1357026 - L1MC2 LINE L1 0 6344 6067 1305 101 2 2 chr21 43550904 43551258 -1356312 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 797 153 6 45 chr21 43552591 43552748 -1354822 + L1MB7 LINE L1 6034 6184 0 646 271 69 67 chr21 43552748 43552960 -1354610 + L1M4 LINE L1 4276 4486 -1660 1912 122 49 0 chr21 43552960 43553247 -1354323 + AluSx SINE Alu 3 303 -9 646 271 69 67 chr21 43553247 43553524 -1354046 + L1M4 LINE L1 4486 4766 -1380 1910 109 14 21 chr21 43554247 43554565 -1353005 + AluSg SINE Alu 1 316 0 21 57 0 0 chr21 43556780 43556815 -1350755 + AT_rich Low_complexity Low_complexity 1 35 0 2074 133 0 0 chr21 43556820 43557129 -1350441 - AluSx SINE Alu -3 309 1 1932 156 3 0 chr21 43557136 43557425 -1350145 - AluJo SINE Alu -22 290 1 322 299 78 52 chr21 43557442 43557787 -1349783 + L1MC4a LINE L1 6414 6767 -1041 425 313 48 45 chr21 43557952 43558220 -1349350 + L1MC5 LINE L1 6923 7191 -770 359 324 111 56 chr21 43558804 43559020 -1348550 + L1MC5 LINE L1 7609 7836 -125 415 276 26 0 chr21 43559480 43559596 -1347974 + MIR SINE MIR 32 150 -112 1879 145 0 14 chr21 43560014 43560310 -1347260 + AluJo SINE Alu 17 308 -4 344 358 17 11 chr21 43560764 43560943 -1346627 + (CA)n Simple_repeat Simple_repeat 1 180 0 255 281 39 23 chr21 43560966 43561094 -1346476 + (CA)n Simple_repeat Simple_repeat 1 130 0 351 269 15 30 chr21 43561106 43561368 -1346202 + (CA)n Simple_repeat Simple_repeat 1 258 0 2359 99 0 0 chr21 43562769 43563082 -1344488 + AluSq SINE Alu 1 313 0 264 315 0 0 chr21 43563683 43563756 -1343814 + (CA)n Simple_repeat Simple_repeat 2 74 0 711 231 121 42 chr21 43563760 43564115 -1343455 + MLT1B LTR MaLR 2 384 -6 447 263 0 0 chr21 43564152 43564636 -1342934 + (CA)n Simple_repeat Simple_repeat 1 484 0 555 333 0 6 chr21 43564644 43564815 -1342755 + MIR SINE MIR 14 183 -79 2387 287 54 15 chr21 43564886 43564955 -1342615 + L1ME3A LINE L1 2841 2906 -3240 658 193 22 37 chr21 43564955 43565090 -1342480 + FLAM_A SINE Alu 1 133 0 2387 287 54 15 chr21 43565090 43565775 -1341795 + L1ME3A LINE L1 2906 3660 -2486 1748 168 73 24 chr21 43565775 43566145 -1341425 + MLT1B LTR MaLR 1 388 -2 2387 287 54 15 chr21 43566145 43566551 -1341019 + L1ME3A LINE L1 3660 4048 -2098 494 154 87 10 chr21 43566636 43566740 -1340830 + MLT1B LTR MaLR 25 136 -254 339 293 47 0 chr21 43566767 43566873 -1340697 + L1ME3A LINE L1 4076 4186 -1960 459 271 82 0 chr21 43566873 43567043 -1340527 + LTR50 LTR ERVL 2 185 -610 274 326 125 7 chr21 43567054 43567198 -1340372 + L1MC4 LINE L1 7602 7762 -280 1796 229 151 9 chr21 43567278 43567841 -1339729 + LTR48B LTR ERV1 1 643 -1 228 223 136 19 chr21 43567902 43568005 -1339565 + L1MC4 LINE L1 7924 8038 -4 351 282 169 0 chr21 43569284 43569408 -1338162 - MIR SINE MIR -87 175 31 434 183 17 78 chr21 43571038 43571084 -1336486 + MLT1D LTR MaLR 417 434 -71 2200 82 24 0 chr21 43571084 43571378 -1336192 - AluSx SINE Alu -11 301 1 434 183 17 78 chr21 43571378 43571446 -1336124 + MLT1D LTR MaLR 434 505 0 300 269 14 50 chr21 43573726 43573867 -1333703 + L1ME3A LINE L1 5169 5304 -842 525 325 79 14 chr21 43574059 43574336 -1333234 + L1ME3A LINE L1 5569 5863 -307 308 335 96 18 chr21 43574453 43574620 -1332950 + L2 LINE L2 3091 3270 -2 2168 95 16 10 chr21 43576700 43577006 -1330564 + AluSg SINE Alu 1 308 -2 584 243 60 11 chr21 43578737 43578922 -1328648 - MER67C LTR ERV1 0 710 517 355 212 24 0 chr21 43578998 43579083 -1328487 - MER67C LTR ERV1 -506 204 118 504 316 122 18 chr21 43579413 43580244 -1327326 - L1ME3A LINE L1 -307 6143 5180 2401 75 0 0 chr21 43580280 43580586 -1326984 + AluSx SINE Alu 1 306 -6 351 292 91 28 chr21 43580655 43581107 -1326463 - L1ME3A LINE L1 -3822 2604 2171 1401 232 77 97 chr21 43581114 43581753 -1325817 + MLT1E2 LTR MaLR 1 626 0 240 286 10 10 chr21 43581956 43582054 -1325516 - L1ME3A LINE L1 -4567 1859 1762 918 250 32 0 chr21 43582056 43582340 -1325230 + L1MD3 LINE L1 6960 7252 -743 372 328 0 0 chr21 43582348 43582467 -1325103 + MLT1F1 LTR MaLR 1 119 -448 1825 232 55 12 chr21 43582471 43583039 -1324531 + L1MD3 LINE L1 7402 7993 -2 1515 213 32 0 chr21 43583086 43583396 -1324174 - MER2 DNA MER2_type -25 320 1 229 325 82 5 chr21 43583398 43583592 -1323978 - L1ME3A LINE L1 -4819 1607 1399 250 259 102 54 chr21 43583705 43583852 -1323718 - MLT1H LTR MaLR -264 285 132 217 343 86 0 chr21 43584108 43584213 -1323357 - MIR SINE MIR -146 116 3 282 243 41 7 chr21 43585041 43585130 -1322440 + C-rich Low_complexity Low_complexity 3 153 0 319 197 0 92 chr21 43586007 43586149 -1321421 + G-rich Low_complexity Low_complexity 3 131 0 1017 266 79 42 chr21 43587770 43588288 -1319282 + MER34 LTR ERV1 4 540 -2 284 296 9 87 chr21 43590172 43590287 -1317283 - MIR SINE MIR -128 134 29 180 100 0 180 chr21 43593014 43593064 -1314506 + L2 LINE L2 3181 3221 -92 831 284 109 11 chr21 43593184 43593634 -1313936 + MLT1D LTR MaLR 3 496 -9 194 299 47 47 chr21 43594412 43594519 -1313051 - MER5B DNA MER1_type -67 111 5 2113 114 0 7 chr21 43594787 43595086 -1312484 - AluSx SINE Alu -15 297 1 24 0 0 0 chr21 43595103 43595127 -1312443 + AT_rich Low_complexity Low_complexity 1 24 0 205 327 91 0 chr21 43597872 43597982 -1309588 + MER5A DNA MER1_type 5 124 -65 374 286 103 32 chr21 43598082 43598267 -1309303 - MER82 DNA MER2_type 0 653 456 201 196 0 0 chr21 43598267 43598323 -1309247 + (TG)n Simple_repeat Simple_repeat 2 57 0 270 282 24 16 chr21 43599736 43599860 -1307710 + LTR33 LTR ERVL 376 500 -21 748 373 132 24 chr21 43599863 43599924 -1307646 - L1MEc LINE L1 -1042 5173 5120 2182 119 3 0 chr21 43599924 43600234 -1307336 - AluY SINE Alu 0 311 1 748 373 132 24 chr21 43600234 43600633 -1306937 - L1MEc LINE L1 -1095 5120 4663 698 144 51 0 chr21 43601973 43602091 -1305479 - THE1B LTR MaLR -240 124 1 282 75 0 0 chr21 43602126 43602166 -1305404 - THE1B LTR MaLR -324 40 1 808 340 85 23 chr21 43602265 43602841 -1304729 - L1ME1 LINE L1 -5 6161 5550 250 296 0 0 chr21 43602912 43602983 -1304587 - L1ME1 LINE L1 -633 5529 5459 395 289 0 0 chr21 43603009 43603106 -1304464 - MIR SINE MIR -116 146 50 215 204 36 78 chr21 43604350 43604517 -1303053 + (CTGGGG)n Simple_repeat Simple_repeat 2 161 0 274 300 113 33 chr21 43604721 43604871 -1302699 - MIR SINE MIR -74 188 27 406 354 81 42 chr21 43605254 43605653 -1301917 - L1MEc LINE L1 -1733 4482 4030 2097 146 7 0 chr21 43605653 43605962 -1301608 + AluJb SINE Alu 1 311 -1 406 354 81 42 chr21 43605962 43606121 -1301449 - L1MEc LINE L1 -2185 4030 3879 2082 110 0 0 chr21 43606324 43606606 -1300964 - AluSx SINE Alu -26 286 5 636 345 96 5 chr21 43606647 43607084 -1300486 - L1ME3A LINE L1 -241 5998 5522 1053 256 24 6 chr21 43607463 43607803 -1299767 - L1ME3A LINE L1 -1274 4941 4596 2442 254 72 18 chr21 43607830 43608728 -1298842 - L1ME3A LINE L1 -1751 4464 3518 822 232 0 0 chr21 43608795 43608976 -1298594 - AluJo SINE Alu -16 296 116 2197 102 7 0 chr21 43609052 43609345 -1298225 + AluSx SINE Alu 1 295 -17 2434 275 64 65 chr21 43609385 43610387 -1297183 - L1MEc LINE L1 -2936 3279 2278 2245 93 7 3 chr21 43610387 43610697 -1296873 + AluY SINE Alu 1 311 0 2434 275 64 65 chr21 43610697 43611387 -1296183 - L1MEc LINE L1 -3937 2278 1626 2174 114 0 0 chr21 43611387 43611684 -1295886 + AluY SINE Alu 1 297 -14 2434 275 64 65 chr21 43611684 43612317 -1295253 - L1MEc LINE L1 -4589 1626 994 284 221 6 19 chr21 43614079 43614237 -1293333 + (CA)n Simple_repeat Simple_repeat 2 157 0 24 32 0 0 chr21 43615464 43615495 -1292075 + GC_rich Low_complexity Low_complexity 1 31 0 284 110 7 90 chr21 43615523 43615668 -1291902 + (CCCCG)n Simple_repeat Simple_repeat 2 134 0 2145 104 0 16 chr21 43622774 43623082 -1284488 - AluSx SINE Alu -9 303 1 210 319 44 0 chr21 43623464 43623555 -1284015 + MIR SINE MIR 56 150 -112 276 120 0 0 chr21 43624578 43624628 -1282942 + (GGA)n Simple_repeat Simple_repeat 1 50 0 309 225 100 8 chr21 43625385 43625505 -1282065 + MLT1D LTR MaLR 98 228 -277 301 256 0 11 chr21 43632565 43632741 -1274829 + (CA)n Simple_repeat Simple_repeat 1 174 0 2003 100 0 81 chr21 43633333 43633654 -1273916 - AluSp SINE Alu -18 295 1 34 24 0 0 chr21 43634019 43634060 -1273510 + GC_rich Low_complexity Low_complexity 1 41 0 2294 91 0 0 chr21 43636648 43636945 -1270625 - AluSx SINE Alu -15 297 1 937 296 75 3 chr21 43639004 43639379 -1268191 - L1MB5 LINE L1 0 6174 5773 2184 97 7 13 chr21 43639431 43639741 -1267829 - AluSc SINE Alu -1 308 1 278 219 77 12 chr21 43641893 43642062 -1265508 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 224 279 51 13 chr21 43644291 43644370 -1263200 + MIR SINE MIR 77 158 -104 183 205 0 54 chr21 43645753 43645865 -1261705 + GA-rich Low_complexity Low_complexity 1 106 0 263 194 30 0 chr21 43647171 43647238 -1260332 + (CTGGGG)n Simple_repeat Simple_repeat 4 72 0 206 153 17 0 chr21 43647643 43647702 -1259868 + (CA)n Simple_repeat Simple_repeat 1 60 0 432 224 0 0 chr21 43647714 43647884 -1259686 + (CA)n Simple_repeat Simple_repeat 1 170 0 216 188 0 0 chr21 43647898 43647962 -1259608 + (CA)n Simple_repeat Simple_repeat 1 64 0 405 230 0 0 chr21 43647974 43648152 -1259418 + (CA)n Simple_repeat Simple_repeat 1 178 0 459 219 0 0 chr21 43648164 43648342 -1259228 + (CA)n Simple_repeat Simple_repeat 1 178 0 411 231 0 0 chr21 43648354 43648608 -1258962 + (CA)n Simple_repeat Simple_repeat 1 254 0 213 236 0 0 chr21 43648628 43648734 -1258836 + (CA)n Simple_repeat Simple_repeat 1 106 0 450 220 0 0 chr21 43648746 43648923 -1258647 + (CA)n Simple_repeat Simple_repeat 1 177 0 184 239 43 0 chr21 43650303 43650349 -1257221 + L2 LINE L2 3207 3254 -18 279 358 31 31 chr21 43651287 43651449 -1256121 + MER5B DNA MER1_type 13 174 -4 409 304 111 54 chr21 43653063 43653786 -1253784 - L1M2 LINE L1 -5399 1450 528 185 341 22 11 chr21 43654749 43654840 -1252730 + L2 LINE L2 3180 3271 -1 3083 249 50 1 chr21 43655510 43656914 -1250656 - L1MB7 LINE L1 -10 6174 4700 3794 214 96 40 chr21 43656928 43657735 -1249835 + L1M4 LINE L1 3370 4277 -1869 224 20 0 82 chr21 43657735 43657784 -1249786 + (TA)n Simple_repeat Simple_repeat 1 45 0 3794 214 96 40 chr21 43657784 43658252 -1249318 + L1M4 LINE L1 4277 4717 -1429 308 318 6 45 chr21 43658897 43659076 -1248494 + (CATA)n Simple_repeat Simple_repeat 4 175 0 297 301 64 19 chr21 43659139 43659295 -1248275 - L1MC4 LINE L1 -186 7856 7694 183 256 0 33 chr21 43662921 43663042 -1244528 + (TATG)n Simple_repeat Simple_repeat 2 118 0 418 305 6 23 chr21 43663057 43663234 -1244336 + (TATG)n Simple_repeat Simple_repeat 4 177 0 446 269 5 54 chr21 43663273 43663459 -1244111 + (TATG)n Simple_repeat Simple_repeat 1 177 0 471 251 11 44 chr21 43663579 43663828 -1243742 + (TATG)n Simple_repeat Simple_repeat 1 240 0 251 408 6 6 chr21 43663813 43663987 -1243583 + (TG)n Simple_repeat Simple_repeat 1 174 0 * 272 289 36 12 chr21 43665092 43665175 -1242395 + MIR SINE MIR 60 144 -118 263 323 195 0 chr21 43667680 43667844 -1239726 - MIR SINE MIR -66 196 1 216 0 0 0 chr21 43668642 43668666 -1238904 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 302 298 70 38 chr21 43670553 43670711 -1236859 - MIR SINE MIR -85 177 15 844 159 83 26 chr21 43671526 43671753 -1235817 - L1MA9 LINE L1 -53 6238 5996 547 149 19 0 chr21 43671788 43671895 -1235675 + L1M4c LINE L1 1665 1773 -4611 760 114 58 3 chr21 43672176 43672329 -1235241 - L1MA9 LINE L1 -186 6003 5847 * 8556 163 50 8 chr21 43672327 43674108 -1233462 - L1M4c LINE L1 -4509 1875 20 2213 117 3 0 chr21 43674155 43674462 -1233108 + AluSp SINE Alu 1 308 -5 1199 184 19 8 chr21 43675034 43675290 -1232280 - MLT1D LTR MaLR -1 504 246 329 259 46 23 chr21 43675351 43675482 -1232088 - MLT1D LTR MaLR -492 134 1 363 319 75 36 chr21 43680716 43680980 -1226590 - L1ME LINE L1 -669 5452 5175 2312 95 0 16 chr21 43681009 43681326 -1226244 - AluSx SINE Alu 0 312 1 2302 55 41 0 chr21 43682758 43683050 -1224520 - AluY SINE Alu -7 304 1 504 118 58 6 chr21 43684790 43685129 -1222441 + (TG)n Simple_repeat Simple_repeat 1 356 0 231 104 70 35 chr21 43687041 43687156 -1220414 + (TG)n Simple_repeat Simple_repeat 1 119 0 497 123 38 48 chr21 43687197 43687491 -1220079 + (TG)n Simple_repeat Simple_repeat 1 291 0 201 211 0 0 chr21 43689669 43689726 -1217844 + (TG)n Simple_repeat Simple_repeat 1 57 0 412 227 30 30 chr21 43689740 43690047 -1217523 + (CA)n Simple_repeat Simple_repeat 1 307 0 263 141 50 20 chr21 43690058 43690157 -1217413 + (CA)n Simple_repeat Simple_repeat 1 102 0 413 327 0 29 chr21 43694400 43694757 -1212813 + (CA)n Simple_repeat Simple_repeat 1 346 0 222 256 0 24 chr21 43694797 43694922 -1212648 + (CA)n Simple_repeat Simple_repeat 1 122 0 1656 109 0 68 chr21 43695575 43695840 -1211730 - AluSq SINE Alu -66 247 1 967 204 0 0 chr21 43695889 43696051 -1211519 + FRAM SINE Alu 1 162 -14 351 195 10 57 chr21 43700341 43700655 -1206915 + C-rich Low_complexity Low_complexity 1 299 0 278 243 54 0 chr21 43702542 43702616 -1204954 + MIR SINE MIR 79 156 -106 213 195 0 0 chr21 43704299 43704340 -1203230 + C-rich Low_complexity Low_complexity 1 41 0 222 344 0 0 chr21 43706114 43706277 -1201293 + (CA)n Simple_repeat Simple_repeat 1 163 0 263 275 7 70 chr21 43706288 43706430 -1201140 + (CATATA)n Simple_repeat Simple_repeat 3 135 0 225 269 0 0 chr21 43706488 43706566 -1201004 + (CATA)n Simple_repeat Simple_repeat 1 78 0 231 317 57 8 chr21 43709608 43709731 -1197839 + HAL1 LINE L1 1470 1598 -909 295 360 47 14 chr21 43710346 43710557 -1197013 + L1MEc LINE L1 2132 2349 -4047 298 147 28 28 chr21 43710603 43710746 -1196824 + (TG)n Simple_repeat Simple_repeat 1 143 0 207 161 52 17 chr21 43710799 43710973 -1196597 + (TG)n Simple_repeat Simple_repeat 1 180 0 341 106 55 38 chr21 43710998 43711664 -1195906 + (GTGTG)n Simple_repeat Simple_repeat 1 677 0 309 319 58 5 chr21 43711666 43711854 -1195716 + L1MEc LINE L1 2418 2615 -3600 349 379 114 5 chr21 43712969 43713188 -1194382 + L1MEc LINE L1 3092 3334 -2881 3279 26 0 0 chr21 43713542 43713963 -1193607 - L1P1 LINE L1 -433 5722 5302 3330 18 0 8 chr21 43713963 43714341 -1193229 + L1PA3 LINE L1 5777 6154 -1 25 0 0 0 chr21 43714341 43714366 -1193204 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr21 43715038 43715068 -1192502 + GC_rich Low_complexity Low_complexity 1 30 0 262 250 0 50 chr21 43717250 43717370 -1190200 + CT-rich Low_complexity Low_complexity 2 115 0 677 227 16 5 chr21 43718503 43719082 -1188488 + (TGGG)n Simple_repeat Simple_repeat 1 585 0 268 181 47 0 chr21 43721478 43721649 -1185921 + (CA)n Simple_repeat Simple_repeat 2 180 0 291 276 158 0 chr21 43727484 43727611 -1179959 + L1MD1 LINE L1 32 178 -6362 6529 214 86 42 chr21 43727689 43731119 -1176451 + L1MD1 LINE L1 190 4919 -1717 1937 157 44 39 chr21 43731119 43731292 -1176278 + MLT1B LTR MaLR 1 172 -218 2333 100 3 0 chr21 43731292 43731603 -1175967 + AluSp SINE Alu 1 312 -1 1937 157 44 39 chr21 43731603 43731817 -1175753 + MLT1B LTR MaLR 172 390 0 6529 214 86 42 chr21 43731817 43733615 -1173955 + L1MD1 LINE L1 4919 6636 0 869 153 118 0 chr21 43736759 43736929 -1170641 - MER46B DNA MER2_type 0 236 47 571 206 35 65 chr21 43736995 43737129 -1170441 - MER46B DNA MER2_type -2690 41 36 2225 101 14 0 chr21 43737129 43737425 -1170145 - AluSx SINE Alu -12 300 1 571 206 35 65 chr21 43737425 43737460 -1170110 - MER46B DNA MER2_type -2695 36 2 318 321 13 25 chr21 43739129 43739288 -1168282 + L1ME LINE L1 5580 5736 -385 221 245 29 0 chr21 43740131 43740270 -1167300 + (TG)n Simple_repeat Simple_repeat 2 144 0 245 208 39 7 chr21 43740353 43740507 -1167063 + (TG)n Simple_repeat Simple_repeat 2 160 0 281 228 32 14 chr21 43740524 43740804 -1166766 + (TG)n Simple_repeat Simple_repeat 1 285 0 285 209 40 0 chr21 43740822 43740970 -1166600 + (TG)n Simple_repeat Simple_repeat 1 154 0 235 239 0 102 chr21 43741620 43741817 -1165753 + G-rich Low_complexity Low_complexity 3 179 0 2191 124 0 3 chr21 43742988 43743294 -1164276 - AluSx SINE Alu -7 305 1 242 266 0 16 chr21 43743497 43743561 -1164009 + GA-rich Low_complexity Low_complexity 1 63 0 186 43 0 0 chr21 43751584 43751607 -1155963 + (GAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr21 43753017 43753054 -1154516 + GC_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr21 43753570 43753599 -1153971 + GC_rich Low_complexity Low_complexity 1 29 0 268 340 0 0 chr21 43755643 43755743 -1151827 + (CA)n Simple_repeat Simple_repeat 2 101 0 2351 133 30 5 chr21 43755743 43756150 -1151420 + MSTB LTR MaLR 1 417 -9 288 293 9 9 chr21 43756157 43756263 -1151307 + (CA)n Simple_repeat Simple_repeat 1 106 0 985 286 36 3 chr21 43757484 43757841 -1149729 + L1ME1 LINE L1 4163 4531 -1615 2844 148 20 9 chr21 43757841 43758448 -1149122 + MER4B LTR ERV1 1 779 0 701 234 27 0 chr21 43758448 43758636 -1148934 + L1ME1 LINE L1 4528 4720 -1426 441 321 76 4 chr21 43758637 43758874 -1148696 + L1ME1 LINE L1 4789 5042 -1104 1066 242 107 49 chr21 43758898 43759030 -1148540 + L1ME1 LINE L1 5197 5320 -846 2061 111 0 0 chr21 43759030 43759310 -1148260 + AluSx SINE Alu 1 280 -32 201 39 0 0 chr21 43759310 43759336 -1148234 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1066 242 107 49 chr21 43759336 43759784 -1147786 + L1ME1 LINE L1 5319 5830 -336 252 200 17 0 chr21 43759984 43760044 -1147526 + L1MB7 LINE L1 6123 6183 -1 254 143 0 67 chr21 43760197 43760316 -1147254 + (AGGGGG)n Simple_repeat Simple_repeat 3 113 0 213 272 0 16 chr21 43761401 43761593 -1145977 + C-rich Low_complexity Low_complexity 1 188 0 898 86 47 0 chr21 43761710 43761838 -1145732 + AluSp/q SINE Alu 171 304 -9 676 381 86 14 chr21 43761842 43762503 -1145067 - L1M4 LINE L1 -2973 3173 2465 984 165 43 5 chr21 43764020 43764208 -1143362 - L1MB3 LINE L1 -1 6182 5988 205 375 0 0 chr21 43764215 43764303 -1143267 + C-rich Low_complexity Low_complexity 1 88 0 395 300 82 24 chr21 43764307 43764600 -1142970 - L1MB3 LINE L1 -174 6009 5700 22 35 0 0 chr21 43764994 43765023 -1142547 + GC_rich Low_complexity Low_complexity 1 29 0 262 168 50 0 chr21 43765030 43765191 -1142379 + (CGG)n Simple_repeat Simple_repeat 2 170 0 282 293 8 16 chr21 43765196 43765319 -1142251 + G-rich Low_complexity Low_complexity 5 126 0 25 0 0 0 chr21 43765373 43765398 -1142172 + GC_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr21 43765481 43765502 -1142068 + (CGGGG)n Simple_repeat Simple_repeat 3 23 0 246 222 0 16 chr21 43766287 43766350 -1141220 - Charlie8 DNA MER1_type -2252 165 104 21 36 0 0 chr21 43766376 43766404 -1141166 + AT_rich Low_complexity Low_complexity 1 28 0 2306 107 0 0 chr21 43768640 43768949 -1138621 - AluSc SINE Alu 0 309 1 308 351 46 23 chr21 43768956 43769087 -1138483 + L1M4 LINE L1 5059 5192 -954 2109 116 0 0 chr21 43771321 43771648 -1135922 + AluSx SINE Alu 1 327 0 2275 109 0 0 chr21 43771693 43771997 -1135573 + AluSc SINE Alu 1 304 -5 814 328 25 12 chr21 43772244 43772643 -1134927 + L1MC3 LINE L1 34 437 -5959 4181 268 74 35 chr21 43772718 43773903 -1133667 + L1MC3 LINE L1 355 1493 -4722 2373 94 0 0 chr21 43773903 43774212 -1133358 - AluSc SINE Alu 0 309 1 4181 268 74 35 chr21 43774212 43774542 -1133028 + L1MC3 LINE L1 1493 1809 -4406 1839 144 3 39 chr21 43774542 43774848 -1132722 + AluJb SINE Alu 1 295 -17 4181 268 74 35 chr21 43774848 43775737 -1131833 + L1MC3 LINE L1 1809 2828 -3387 2386 59 3 13 chr21 43775737 43776042 -1131528 + AluY SINE Alu 1 302 -9 4181 268 74 35 chr21 43776042 43776248 -1131322 + L1MC3 LINE L1 2828 3025 -3190 1536 210 135 25 chr21 43776254 43776861 -1130709 - L1M1 LINE L1 -4093 3472 2817 7892 221 59 15 chr21 43776865 43777590 -1129980 + L1MC3 LINE L1 3785 4477 -1758 1726 177 138 26 chr21 43777590 43777975 -1129595 - MSTC LTR MaLR 0 428 1 7892 221 59 15 chr21 43777975 43779306 -1128264 + L1MC3 LINE L1 4477 6217 -18 2148 96 13 20 chr21 43779322 43779625 -1127945 + AluSx SINE Alu 11 311 -1 288 147 118 0 chr21 43779664 43779732 -1127838 + L1ME LINE L1 5365 5440 -726 2157 91 0 23 chr21 43779737 43780045 -1127525 + AluY SINE Alu 5 305 -6 1947 133 0 0 chr21 43780143 43780422 -1127148 - AluSx SINE Alu -33 279 1 232 222 167 0 chr21 43780542 43780632 -1126938 + L1MA10 LINE L1 6188 6292 -42 191 284 57 45 chr21 43781555 43781643 -1125927 + MIR SINE MIR 40 128 -134 2091 113 3 0 chr21 43782435 43782728 -1124842 - AluSx SINE Alu -18 294 1 262 187 112 84 chr21 43782841 43782948 -1124622 + MLT1K LTR MaLR 468 577 -11 326 331 32 26 chr21 43783046 43783200 -1124370 - MIR SINE MIR 0 262 108 229 286 55 0 chr21 43785558 43785649 -1121921 - L1ME2 LINE L1 -8 6156 6061 557 210 62 17 chr21 43787418 43787594 -1119976 + ORSL DNA AcHobo 31 214 -61 226 228 89 0 chr21 43791440 43791519 -1116051 + MLT1G LTR MaLR 203 288 -302 2214 76 41 0 chr21 43791625 43791916 -1115654 - AluY SINE Alu -8 303 1 384 352 128 37 chr21 43792651 43793003 -1114567 - L1MC4a LINE L1 -1636 6172 5789 250 222 0 0 chr21 43793056 43793119 -1114451 - L1MEc LINE L1 -3641 2574 2512 486 314 47 18 chr21 43793215 43793384 -1114186 - L1MEc LINE L1 -3756 2459 2286 2082 136 12 40 chr21 43793557 43793903 -1113667 - MER1B DNA MER1_type 0 337 2 251 294 59 8 chr21 43793989 43794108 -1113462 - HAL1b LINE L1 -779 569 445 2040 201 48 5 chr21 43794198 43794610 -1112960 + MER63B DNA MER1_type 3 432 -4 285 211 111 22 chr21 43795444 43795534 -1112036 - MLT1G1 LTR MaLR -485 110 13 2224 108 3 0 chr21 43795544 43795849 -1111721 + AluSp SINE Alu 1 306 -7 311 250 138 9 chr21 43795882 43795998 -1111572 - MLT1G1-int LTR MaLR -21 1714 1584 262 298 16 50 chr21 43796418 43796539 -1111031 - MLT1G1-int LTR MaLR -496 875 759 2005 253 72 64 chr21 43797735 43798276 -1109294 - L1MEc LINE L1 -5402 994 373 269 300 0 0 chr21 43798276 43798346 -1109224 + CT-rich Low_complexity Low_complexity 3 72 0 2005 253 72 64 chr21 43798346 43798700 -1108870 - L1MEc LINE L1 -6023 373 23 367 333 153 28 chr21 43798702 43798984 -1108586 - L1MDa LINE L1 -4599 1530 1214 358 250 78 63 chr21 43799000 43799268 -1108302 - L1MDa LINE L1 -4935 1184 913 2057 97 10 32 chr21 43799304 43799615 -1107955 + AluSx SINE Alu 1 304 -8 30 0 0 0 chr21 43799804 43799834 -1107736 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr21 43799887 43799908 -1107662 + GC_rich Low_complexity Low_complexity 1 21 0 369 144 22 86 chr21 43800439 43800578 -1106992 + (CGGGG)n Simple_repeat Simple_repeat 5 134 0 240 35 0 0 chr21 43800821 43800850 -1106720 + (CGGGGG)n Simple_repeat Simple_repeat 5 33 0 327 195 39 18 chr21 43801131 43801422 -1106148 + (CA)n Simple_repeat Simple_repeat 1 297 0 366 154 65 6 chr21 43801441 43801610 -1105960 + (CA)n Simple_repeat Simple_repeat 1 179 0 309 132 83 0 chr21 43801634 43801778 -1105792 + (CA)n Simple_repeat Simple_repeat 1 156 0 297 155 62 10 chr21 43801793 43801890 -1105680 + (CA)n Simple_repeat Simple_repeat 2 103 0 322 326 69 35 chr21 43802676 43802820 -1104750 + L1M4 LINE L1 3682 3830 -2316 946 96 45 6 chr21 43802841 43802998 -1104572 + MER51B LTR ERV1 1 163 -214 311 380 80 0 chr21 43803145 43803225 -1104345 - L1MCa LINE L1 -3476 2950 2878 2567 58 89 0 chr21 43803225 43803551 -1104019 + THE1A LTR MaLR 1 355 0 311 380 80 0 chr21 43803551 43803657 -1103913 - L1MCa LINE L1 -3548 2878 2749 353 284 222 0 chr21 43803832 43804008 -1103562 - L1MCa LINE L1 -3958 2468 2254 1614 177 23 7 chr21 43804180 43804480 -1103090 - AluJo SINE Alu -2 310 6 453 324 7 0 chr21 43805446 43805591 -1101979 + (TG)n Simple_repeat Simple_repeat 1 146 0 2363 155 48 10 chr21 43806765 43807177 -1100393 - MSTA LTR MaLR 0 428 1 2242 68 7 0 chr21 43807188 43807497 -1100073 - AluY SINE Alu 0 311 1 2249 89 3 0 chr21 43807503 43807794 -1099776 - AluSp SINE Alu -21 292 1 869 109 0 68 chr21 43809552 43809699 -1097871 + AluSg/x SINE Alu 155 291 -19 1694 171 79 8 chr21 43809926 43810294 -1097276 + MSTB1 LTR MaLR 1 394 -38 2046 133 0 13 chr21 43811011 43811327 -1096243 - AluSx SINE Alu 0 312 1 366 176 11 11 chr21 43811940 43812031 -1095539 + L1ME LINE L1 5394 5484 -680 1509 213 7 13 chr21 43812037 43812342 -1095228 + AluJo SINE Alu 1 303 -9 5449 200 29 5 chr21 43812361 43814491 -1093079 - L1 LINE L1 -3353 3814 1634 4234 187 68 19 chr21 43814488 43815393 -1092177 - L1 LINE L1 -6123 1045 85 * 1995 132 0 35 chr21 43815393 43815703 -1091867 + AluSq SINE Alu 1 299 -14 4234 187 68 19 chr21 43815703 43815790 -1091780 - L1 LINE L1 -7083 85 4 539 150 125 0 chr21 43815795 43815915 -1091655 + Tigger3(Golem) DNA MER2_type 2738 2872 -157 334 224 53 0 chr21 43815909 43815985 -1091585 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 * 312 247 52 0 chr21 43815979 43816056 -1091514 + Tigger3(Golem) DNA MER2_type 2794 2874 -155 * 324 224 53 0 chr21 43816049 43816125 -1091445 + Tigger3(Golem) DNA MER2_type 2803 2882 -147 * 394 145 58 0 chr21 43816119 43816188 -1091382 + Tigger3(Golem) DNA MER2_type 2793 2865 -164 304 217 58 0 chr21 43816189 43816258 -1091312 + Tigger3(Golem) DNA MER2_type 2793 2865 -164 331 224 53 0 chr21 43816259 43816335 -1091235 + Tigger3(Golem) DNA MER2_type 2794 2873 -156 317 231 51 0 chr21 43816328 43816406 -1091164 + Tigger3(Golem) DNA MER2_type 2802 2883 -146 * 295 247 52 0 chr21 43816399 43816476 -1091094 + Tigger3(Golem) DNA MER2_type 2793 2873 -156 * 278 250 53 0 chr21 43816470 43816546 -1091024 + Tigger3(Golem) DNA MER2_type 2794 2873 -156 * 353 174 58 0 chr21 43816539 43816608 -1090962 + Tigger3(Golem) DNA MER2_type 2803 2875 -154 322 203 58 0 chr21 43816612 43816681 -1090889 + Tigger3(Golem) DNA MER2_type 2800 2872 -157 * 365 197 53 0 chr21 43816675 43816751 -1090819 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 343 211 53 0 chr21 43816745 43816821 -1090749 + Tigger3(Golem) DNA MER2_type 2803 2882 -147 * 375 169 52 0 chr21 43816814 43816891 -1090679 + Tigger3(Golem) DNA MER2_type 2802 2882 -147 * 1063 202 35 0 chr21 43816885 43817113 -1090457 + Tigger3(Golem) DNA MER2_type 2794 3029 0 274 308 92 36 chr21 43817117 43817312 -1090258 + L1MB5 LINE L1 5804 6009 -165 438 181 42 12 chr21 43817338 43817504 -1090066 + GA-rich Low_complexity Low_complexity 2 172 0 280 204 62 106 chr21 43817540 43817653 -1089917 + L1MA10 LINE L1 6227 6334 0 1992 280 29 43 chr21 43817998 43818837 -1088733 - L1ME3 LINE L1 -2 6160 5334 343 389 62 10 chr21 43819774 43819967 -1087603 - L1ME3 LINE L1 -773 5373 5171 286 304 60 70 chr21 43820002 43820082 -1087488 - L1M4 LINE L1 -865 5281 5202 2125 109 10 16 chr21 43820082 43820394 -1087176 - AluSg SINE Alu 0 310 1 286 304 60 70 chr21 43820394 43820714 -1086856 - L1M4 LINE L1 -944 5202 4885 829 281 52 10 chr21 43820738 43820992 -1086578 - L1M4 LINE L1 -2097 4049 3778 1837 163 13 3 chr21 43820992 43821299 -1086271 - AluJo SINE Alu -2 310 1 829 281 52 10 chr21 43821299 43821350 -1086220 - L1M4 LINE L1 -2368 3778 3731 601 323 92 25 chr21 43821398 43821844 -1085726 - L1M4 LINE L1 -2576 3570 3095 302 307 80 0 chr21 43823594 43823757 -1083813 + L1ME LINE L1 1233 1408 -5018 272 220 0 0 chr21 43823894 43823953 -1083617 + MLT1H LTR MaLR 489 547 -2 2325 69 0 0 chr21 43823999 43824287 -1083283 - AluY SINE Alu -21 290 3 336 274 217 38 chr21 43824287 43824434 -1083136 + L1ME LINE L1 5303 5481 -945 2155 91 7 0 chr21 43824435 43824721 -1082849 + AluSq SINE Alu 1 288 -25 276 30 0 0 chr21 43824725 43824758 -1082812 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 410 323 119 25 chr21 43824839 43825189 -1082381 + L1ME LINE L1 5577 5952 -490 2482 44 0 0 chr21 43825545 43825841 -1081729 + AluY SINE Alu 1 296 -15 204 233 27 41 chr21 43827263 43827336 -1080234 + CT-rich Low_complexity Low_complexity 1 72 0 186 323 24 89 chr21 43827513 43827637 -1079933 - MIR SINE MIR -37 225 110 3420 162 22 75 chr21 43829214 43829942 -1077628 - LTR8 LTR ERV1 -2 689 1 541 298 53 37 chr21 43829983 43830288 -1077282 - MLT1H1 LTR MaLR -293 262 2 198 242 0 32 chr21 43830288 43830350 -1077220 + MIR SINE MIR 99 158 -104 227 188 42 0 chr21 43830353 43830401 -1077169 - MER116 DNA Mariner -28 52 3 297 283 124 0 chr21 43830412 43830525 -1077045 - MIR SINE MIR -9 253 127 1985 241 100 23 chr21 43830701 43831518 -1076052 - Charlie7 DNA MER1_type -1 2611 1732 4094 56 8 0 chr21 43831723 43832223 -1075347 + L1PA5 LINE L1 5647 6150 -4 183 195 24 0 chr21 43833023 43833064 -1074506 + L3b LINE CR1 1541 1582 -1 1726 186 89 17 chr21 43833119 43833479 -1074091 + MLT1B LTR MaLR 1 386 -4 361 196 125 18 chr21 43833553 43833665 -1073905 + MLT1A2 LTR MaLR 1 124 -272 1247 153 4 52 chr21 43833668 43833845 -1073725 - AluJo SINE Alu -9 303 138 2262 104 0 3 chr21 43833845 43834152 -1073418 - AluSp SINE Alu -7 306 1 1247 153 4 52 chr21 43834152 43834203 -1073367 - AluJo SINE Alu -174 138 86 768 204 21 11 chr21 43834260 43834451 -1073119 + MLT1A2 LTR MaLR 175 367 -7 331 353 79 54 chr21 43834496 43834774 -1072796 - L1MDa LINE L1 -1293 1608 1247 303 371 57 31 chr21 43835196 43835390 -1072180 - L1MDa LINE L1 -5590 940 742 1210 139 0 0 chr21 43835400 43835573 -1071997 + AluJb SINE Alu 134 306 -6 7815 100 3 9 chr21 43835814 43837297 -1070273 - L1PA8A LINE L1 -3 6128 4652 2200 123 3 0 chr21 43837297 43837607 -1069963 + AluSx SINE Alu 1 311 -1 7815 100 3 9 chr21 43837607 43838032 -1069538 - L1PA8A LINE L1 -1479 4652 4226 3919 95 20 0 chr21 43838032 43838642 -1068928 + L1PA8A LINE L1 3611 4232 -1914 253 237 35 18 chr21 43838707 43838821 -1068749 - LTR16C LTR ERVL -13 478 363 296 367 30 21 chr21 43840132 43840629 -1066941 - MERVL LTR ERVL -765 4999 4456 355 272 83 28 chr21 43840629 43840809 -1066761 - MLT1H1 LTR MaLR 0 567 378 512 291 103 54 chr21 43840891 43841274 -1066296 - MLT1H1 LTR MaLR -199 331 1 262 401 18 0 chr21 43841343 43841510 -1066060 - MERVL LTR ERVL -1332 4432 4263 1002 349 41 7 chr21 43842198 43842785 -1064785 - MERVL LTR ERVL -2305 3459 2853 303 67 40 40 chr21 43844188 43844263 -1063307 + (TG)n Simple_repeat Simple_repeat 1 75 0 254 106 21 0 chr21 43846750 43846797 -1060773 + (TC)n Simple_repeat Simple_repeat 2 49 0 781 148 8 0 chr21 43849097 43849219 -1058351 - FLAM_C SINE Alu -10 123 1 310 269 109 52 chr21 43849623 43849816 -1057754 - L1M2 LINE L1 -5891 958 755 317 306 94 83 chr21 43849905 43850265 -1057305 - L1M2 LINE L1 -5889 960 597 * 390 292 97 99 chr21 43850150 43850969 -1056601 + L1M2 LINE L1 650 1404 -5445 34 0 0 0 chr21 43851080 43851114 -1056456 + GC_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr21 43851135 43851157 -1056413 + GC_rich Low_complexity Low_complexity 1 22 0 271 250 20 0 chr21 43851181 43851305 -1056265 + (CCG)n Simple_repeat Simple_repeat 1 126 0 345 250 78 83 chr21 43851313 43851517 -1056053 - L1M2 LINE L1 -5590 1259 1057 29 47 0 0 chr21 43851734 43851777 -1055793 + GC_rich Low_complexity Low_complexity 1 43 0 474 18 0 0 chr21 43853522 43853577 -1053993 + (TC)n Simple_repeat Simple_repeat 2 56 0 351 0 0 0 chr21 43853576 43853615 -1053955 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 720 147 0 0 chr21 43853921 43854037 -1053533 - MSTC LTR MaLR 0 428 313 1116 97 65 21 chr21 43854037 43854223 -1053347 - MSTC LTR MaLR -234 194 1 478 322 37 84 chr21 43854741 43855039 -1052531 - L2 LINE L2 -2 3270 2987 1680 169 94 50 chr21 43855235 43855715 -1051855 + MLT1D LTR MaLR 3 503 -2 393 289 142 20 chr21 43856105 43856496 -1051074 - L1ME LINE L1 -650 5516 5174 2217 106 75 29 chr21 43856496 43856844 -1050726 - THE1B LTR MaLR 0 364 1 393 289 142 20 chr21 43856844 43857081 -1050489 - L1ME LINE L1 -992 5174 4813 309 277 87 68 chr21 43857086 43857515 -1050055 - L1ME LINE L1 -1940 4206 3763 1515 177 8 41 chr21 43857515 43857781 -1049789 + AluJb SINE Alu 1 257 -55 309 277 87 68 chr21 43857781 43857892 -1049678 - L1ME LINE L1 -2383 3763 3656 1544 188 0 15 chr21 43857920 43858186 -1049384 - AluJo SINE Alu -13 299 38 319 229 34 25 chr21 43858309 43858427 -1049143 - MLT1I LTR MaLR -253 156 38 * 1247 216 22 8 chr21 43858415 43858683 -1048887 + MLT1E LTR MaLR 319 590 -3 697 261 72 21 chr21 43858789 43859263 -1048307 - L1ME4a LINE L1 -2 6188 5661 225 246 66 33 chr21 43859738 43859860 -1047710 - L1ME4a LINE L1 -2 6119 5994 238 297 0 62 chr21 43859861 43859911 -1047659 - L1ME4a LINE L1 -2346 3869 3817 2318 83 0 7 chr21 43859911 43860211 -1047359 - AluSx SINE Alu -14 298 1 238 297 0 62 chr21 43860211 43860288 -1047282 - L1ME4a LINE L1 -2398 3817 3750 1394 277 76 32 chr21 43860288 43861387 -1046183 - L1MEc LINE L1 -3052 3163 2066 365 337 16 42 chr21 43861660 43861807 -1045763 - L1MEc LINE L1 -4576 1820 1678 2473 83 0 0 chr21 43861807 43862107 -1045463 - AluSc SINE Alu -9 300 1 365 337 16 42 chr21 43862107 43862152 -1045418 - L1MEc LINE L1 -4718 1678 1633 2922 196 41 34 chr21 43862185 43863070 -1044500 - L1MB7 LINE L1 -21 6399 5560 6926 50 20 2 chr21 43863070 43864123 -1043447 + L1PA7 LINE L1 5084 6152 -2 5928 236 80 27 chr21 43864153 43864282 -1043288 - L1MB7 LINE L1 -813 5569 5448 2410 94 0 0 chr21 43864282 43864589 -1042981 - AluY SINE Alu -4 307 1 5928 236 80 27 chr21 43864589 43865784 -1041786 - L1MB7 LINE L1 -934 5448 4319 2039 139 0 0 chr21 43865784 43866072 -1041498 - AluSx SINE Alu -24 288 1 5928 236 80 27 chr21 43866072 43866801 -1040769 - L1MB7 LINE L1 -2063 4319 3631 1863 164 0 25 chr21 43866801 43867119 -1040451 - AluJo SINE Alu -2 310 1 5928 236 80 27 chr21 43867119 43868226 -1039344 - L1MB7 LINE L1 -2751 3631 2040 2110 117 0 7 chr21 43868226 43868517 -1039053 + AluSx SINE Alu 2 290 -22 5069 120 40 22 chr21 43868616 43869639 -1037931 - L1PB4 LINE L1 -2 6154 5118 1318 159 16 72 chr21 43869639 43869890 -1037680 - AluJb SINE Alu -75 237 1 2470 173 42 13 chr21 43869890 43869955 -1037615 - L1PB4 LINE L1 -1028 5118 5056 7427 80 34 1 chr21 43869955 43870631 -1036939 + LTR13 LTR ERVK 1 720 -287 189 0 0 0 chr21 43870631 43870652 -1036918 + (TC)n Simple_repeat Simple_repeat 1 21 0 7427 80 34 1 chr21 43870652 43870950 -1036620 + LTR13 LTR ERVK 720 1007 0 2470 173 42 13 chr21 43870950 43871498 -1036072 - L1PB4 LINE L1 -1090 5056 4487 876 285 43 18 chr21 43871507 43871681 -1035889 + L1MEc LINE L1 1316 1484 -4912 197 33 33 0 chr21 43871681 43871711 -1035859 + (TAA)n Simple_repeat Simple_repeat 2 32 0 876 285 43 18 chr21 43871711 43871978 -1035592 + L1MEc LINE L1 1484 1768 -4628 25 0 0 0 chr21 43872059 43872084 -1035486 + AT_rich Low_complexity Low_complexity 1 25 0 2709 10 0 3 chr21 43872085 43872395 -1035175 - L1PA2 LINE L1 -1 6154 5846 1137 197 16 48 chr21 43872399 43872592 -1034978 - L1PB4 LINE L1 -1637 4509 4328 1676 195 3 24 chr21 43872592 43872889 -1034681 + AluJb SINE Alu 5 295 -17 1137 197 16 48 chr21 43872889 43873010 -1034560 - L1PB4 LINE L1 -1818 4328 4205 * 3941 190 6 7 chr21 43873004 43873818 -1033752 + L1PB4 LINE L1 3409 4221 -1925 1229 205 55 153 chr21 43873815 43874200 -1033370 - L1M4c LINE L1 -4480 2166 1773 * 664 146 0 0 chr21 43874200 43874303 -1033267 - AluSc SINE Alu -15 294 192 1229 205 55 153 chr21 43874303 43874547 -1033023 - L1M4c LINE L1 -4873 1773 1507 403 138 23 11 chr21 43874547 43874634 -1032936 + CT-rich Low_complexity Low_complexity 1 88 0 819 177 0 0 chr21 43874652 43874776 -1032794 - FLAM_C SINE Alu -19 124 1 4863 207 72 55 chr21 43874776 43876272 -1031298 - L1M4c LINE L1 -5020 1522 2 415 281 146 22 chr21 43876281 43876782 -1030788 - L1MEc LINE L1 -4762 1959 1397 4354 150 44 15 chr21 43876888 43877274 -1030296 - L1MB3 LINE L1 -7 6176 5803 369 0 0 0 chr21 43877274 43877315 -1030255 + (TA)n Simple_repeat Simple_repeat 2 42 0 4354 150 44 15 chr21 43877315 43877790 -1029780 - L1MB3 LINE L1 -380 5803 5290 309 244 93 89 chr21 43878242 43878467 -1029103 - MLT1J2 LTR MaLR -36 414 189 961 195 87 0 chr21 43879058 43879289 -1028281 - MER90 LTR ERV1 -96 479 229 2503 129 86 0 chr21 43879445 43879839 -1027731 + MSTC LTR MaLR 1 428 0 1132 278 54 10 chr21 43881611 43882018 -1025552 + LTR47B LTR ERVL 13 437 -6 3118 198 35 0 chr21 43883145 43883803 -1023767 + Charlie1a DNA MER1_type 16 696 -759 8233 131 37 9 chr21 43883813 43884231 -1023339 + Tigger1 DNA MER2_type 26 431 -1987 2008 133 33 3 chr21 43884231 43884531 -1023039 - AluSx SINE Alu -3 309 1 8233 131 37 9 chr21 43884531 43885526 -1022044 + Tigger1 DNA MER2_type 431 1478 -940 1021 91 0 0 chr21 43885528 43885660 -1021910 + AluYa8 SINE Alu 1 132 -178 1108 71 0 0 chr21 43885662 43885803 -1021767 + AluY SINE Alu 170 310 -1 5819 103 14 39 chr21 43885805 43886581 -1020989 + Tigger1 DNA MER2_type 1465 2214 -204 2289 104 13 7 chr21 43886581 43886889 -1020681 - AluSx SINE Alu -2 310 1 5819 103 14 39 chr21 43886889 43887089 -1020481 + Tigger1 DNA MER2_type 2214 2417 -1 3023 253 74 38 chr21 43887089 43888325 -1019245 - L1MB3 LINE L1 -877 5269 3971 1162 192 65 78 chr21 43888325 43888695 -1018875 - MLT1A1 LTR MaLR 0 365 1 3023 253 74 38 chr21 43888695 43888899 -1018671 - L1MB3 LINE L1 -2175 3971 3776 469 165 0 0 chr21 43888902 43888981 -1018589 - Tigger5 DNA MER2_type 0 2323 2245 307 238 0 0 chr21 43889036 43889099 -1018471 - Tigger5 DNA MER2_type -2253 70 8 683 218 6 17 chr21 43889099 43889278 -1018292 - L1MB3 LINE L1 -2377 3769 3593 557 185 63 122 chr21 43889270 43889556 -1018014 + L1MDa LINE L1 1324 1592 -4948 * 521 152 36 0 chr21 43889552 43889664 -1017906 - L1MEc LINE L1 -6146 394 279 * 1065 158 27 0 chr21 43889704 43889887 -1017683 - L1MEc LINE L1 -6334 206 19 2566 269 57 20 chr21 43889895 43890488 -1017082 - L2 LINE L2 -613 2701 2064 207 0 0 0 chr21 43890488 43890511 -1017059 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2566 269 57 20 chr21 43890511 43890795 -1016775 - L2 LINE L2 -1250 2064 1792 2306 64 7 0 chr21 43891132 43891415 -1016155 + AluY SINE Alu 20 304 -7 1580 155 71 34 chr21 43891424 43891721 -1015849 + AluJo SINE Alu 2 309 -3 2375 156 35 28 chr21 43891860 43892283 -1015287 + MSTB LTR MaLR 1 426 0 1717 127 23 19 chr21 43892593 43892900 -1014670 + L1MB3 LINE L1 5876 6183 0 1394 286 111 33 chr21 43892928 43893344 -1014226 + L1ME2 LINE L1 35 417 -5798 216 0 0 0 chr21 43893344 43893368 -1014202 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1394 286 111 33 chr21 43893368 43893384 -1014186 + L1ME2 LINE L1 417 430 -5785 2310 113 3 0 chr21 43893384 43893686 -1013884 - AluSx SINE Alu -9 303 1 1394 286 111 33 chr21 43893686 43894858 -1012712 + L1ME2 LINE L1 430 1675 -4540 4985 230 146 38 chr21 43894924 43895194 -1012376 + L1ME2 LINE L1 2151 2391 -3842 2235 105 0 7 chr21 43895194 43895499 -1012071 - AluY SINE Alu -8 303 1 4985 230 146 38 chr21 43895499 43898867 -1008703 + L1ME2 LINE L1 2391 6153 -80 350 129 26 19 chr21 43898853 43898954 -1008616 + (TA)n Simple_repeat Simple_repeat 1 101 0 * 243 296 0 0 chr21 43898941 43899012 -1008558 + L1ME1 LINE L1 6082 6152 -14 * 3652 226 47 31 chr21 43899668 43900739 -1006831 + L1M4 LINE L1 3040 4125 -2021 863 276 94 7 chr21 43900736 43901044 -1006526 + L1ME1 LINE L1 5827 6161 -5 * 861 250 70 4 chr21 43901108 43901352 -1006218 + L1ME LINE L1 1555 1814 -4582 1167 252 79 55 chr21 43901467 43902098 -1005472 + L1ME LINE L1 2015 2617 -3598 322 286 17 0 chr21 43902109 43902228 -1005342 + L1ME LINE L1 4332 4452 -1763 610 310 64 24 chr21 43902240 43902614 -1004956 + L1ME LINE L1 4524 4912 -1303 630 250 11 17 chr21 43902621 43902801 -1004769 + LTR41 LTR ERVL 1 179 -594 613 227 58 72 chr21 43902926 43903204 -1004366 + LTR41 LTR ERVL 499 772 -1 1745 261 28 49 chr21 43903205 43903267 -1004303 + L1ME LINE L1 4915 4977 -1254 2526 75 0 3 chr21 43903267 43903575 -1003995 + AluSg SINE Alu 1 307 -3 1745 261 28 49 chr21 43903575 43903979 -1003591 + L1ME LINE L1 4977 5388 -843 2403 88 0 0 chr21 43903979 43904273 -1003297 + AluSc SINE Alu 1 294 -15 1745 261 28 49 chr21 43904273 43904794 -1002776 + L1ME LINE L1 5388 5887 -344 21 0 0 0 chr21 43904864 43904885 -1002685 + AT_rich Low_complexity Low_complexity 1 21 0 1778 179 0 32 chr21 43904932 43905240 -1002330 + AluJb SINE Alu 2 299 -13 2419 107 30 28 chr21 43907015 43907378 -1000192 - THE1B LTR MaLR 0 364 1 949 62 8 0 chr21 43907378 43907507 -1000063 - THE1B-int LTR MaLR 0 1580 1451 2537 179 93 58 chr21 43908848 43909036 -998534 - Charlie1 DNA MER1_type -4 2757 2577 2002 140 7 0 chr21 43909036 43909328 -998242 - AluSx SINE Alu -18 294 1 2537 179 93 58 chr21 43909328 43909871 -997699 - Charlie1 DNA MER1_type -184 2577 2000 7686 100 26 11 chr21 43909871 43910979 -996591 - Tigger1 DNA MER2_type -1 2417 1293 658 279 130 6 chr21 43910999 43911346 -996224 - L2 LINE L2 -491 2823 2434 554 278 119 0 chr21 43913122 43913298 -994272 - MER58C DNA MER1_type 0 215 19 318 229 105 9 chr21 43913627 43913732 -993838 + MER5B DNA MER1_type 7 121 -57 234 155 10 58 chr21 43913910 43914013 -993557 + CT-rich Low_complexity Low_complexity 4 101 0 309 211 202 18 chr21 43914644 43914702 -992868 - MER5A DNA MER1_type 0 189 143 2236 109 0 0 chr21 43914702 43915020 -992550 + AluSx SINE Alu 1 318 0 309 211 202 18 chr21 43915020 43915074 -992496 - MER5A DNA MER1_type -46 143 55 220 279 16 0 chr21 43915176 43915237 -992333 + L3 LINE CR1 991 1052 -525 199 238 38 50 chr21 43915772 43915852 -991718 - MER5A DNA MER1_type -92 97 19 346 330 114 6 chr21 43916455 43916631 -990939 + MIR SINE MIR 49 243 -19 10136 158 41 96 chr21 43917053 43917629 -989941 - L1MC3 LINE L1 -13 7772 7166 3458 25 0 5 chr21 43917629 43918033 -989537 - L1PA4 LINE L1 -8 6147 5746 10136 158 41 96 chr21 43918033 43918139 -989431 - L1MC3 LINE L1 -619 7166 7056 228 341 0 0 chr21 43918139 43918230 -989340 - MLT1F1 LTR MaLR -442 125 35 10136 158 41 96 chr21 43918230 43919957 -987613 - L1MC3 LINE L1 -729 7056 5410 1698 166 0 66 chr21 43920161 43920493 -987077 - AluJb SINE Alu -2 310 1 698 257 213 0 chr21 43921601 43921897 -985673 + L2 LINE L2 2159 2517 -797 500 290 159 25 chr21 43922061 43922580 -984990 + L1ME3A LINE L1 5318 5902 -268 760 182 40 40 chr21 43922826 43923002 -984568 - L1MB7 LINE L1 -19 6663 6488 8910 202 41 27 chr21 43923016 43923828 -983742 - L1MB7 LINE L1 -588 6088 5289 1672 190 62 19 chr21 43923828 43924202 -983368 - MLT1B LTR MaLR 0 390 1 8910 202 41 27 chr21 43924202 43925940 -981630 - L1MB7 LINE L1 -1387 5289 3507 1305 224 16 37 chr21 43925939 43926261 -981309 - L1MB7 LINE L1 -6220 322 8 * 2078 119 57 41 chr21 43926904 43927273 -980297 + THE1C LTR MaLR 1 375 0 3217 49 3 0 chr21 43927551 43927937 -979633 - L1PA7 LINE L1 -12 6142 5756 321 79 16 79 chr21 43927937 43927998 -979572 + L1PA8 LINE L1 6114 6172 0 2366 103 0 0 chr21 43928599 43928900 -978670 + AluSx SINE Alu 1 301 -11 699 289 46 14 chr21 43929395 43929679 -977891 + L1ME4a LINE L1 5563 5855 -266 268 206 94 100 chr21 43930144 43930188 -977382 + L1ME4a LINE L1 5908 5951 -170 1975 98 3 49 chr21 43930188 43930493 -977077 + AluSc SINE Alu 1 291 -18 268 206 94 100 chr21 43930493 43930628 -976942 + L1ME4a LINE L1 5951 6086 -35 222 257 257 28 chr21 43933584 43933872 -973698 - L2 LINE L2 -835 2479 2126 2063 216 25 28 chr21 43934253 43934817 -972753 - L1MEc LINE L1 -750 5465 4904 2343 152 56 14 chr21 43934871 43935353 -972217 - MER74A LTR ERVL -55 503 2 643 236 211 4 chr21 43935353 43935595 -971975 - L1MEc LINE L1 -1306 4909 4618 1910 257 61 19 chr21 43935629 43936354 -971216 - L1MEc LINE L1 -2065 4150 3396 3110 186 45 34 chr21 43936354 43937084 -970486 - L1MB5 LINE L1 -8 6166 5429 423 224 18 24 chr21 43937114 43937279 -970291 - L1MEc LINE L1 -2829 3386 3223 916 181 20 70 chr21 43937297 43937496 -970074 - AluJo SINE Alu -87 225 37 3021 229 48 22 chr21 43937531 43938643 -968927 - L1MEc LINE L1 -3005 3210 2103 330 259 0 0 chr21 43938874 43938955 -968615 - LTR58 LTR ERV1 -249 430 350 1565 248 51 36 chr21 43939123 43939755 -967815 - L1MEc LINE L1 -4286 2110 1470 411 229 34 34 chr21 43939769 43939887 -967683 - L1MA9 LINE L1 -38 6274 6157 198 0 0 0 chr21 43940026 43940048 -967522 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 249 243 33 118 chr21 43940049 43940124 -967446 - L1MEc LINE L1 -4867 1338 1281 1478 163 101 18 chr21 43940124 43940401 -967169 - AluJo SINE Alu -12 300 1 249 243 33 118 chr21 43940401 43940477 -967093 - L1MEc LINE L1 -4924 1281 1200 1519 274 64 53 chr21 43940499 43940748 -966822 - L1MEc LINE L1 -5224 1172 927 2375 77 6 16 chr21 43940748 43941059 -966511 - AluY SINE Alu -3 308 1 219 36 0 0 chr21 43941059 43941087 -966483 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1766 146 0 0 chr21 43941088 43941335 -966235 - AluSx SINE Alu -31 281 35 1519 274 64 53 chr21 43941335 43941928 -965642 - L1MEc LINE L1 -5468 928 318 865 239 69 0 chr21 43942031 43942278 -965292 - L1MEc LINE L1 -6066 330 67 243 315 149 12 chr21 43943628 43943799 -963771 - MIR SINE MIR -33 229 36 209 263 0 0 chr21 43944208 43944265 -963305 - L2 LINE L2 -1 3271 3215 2455 57 7 0 chr21 43945726 43946022 -961548 - AluY SINE Alu -13 298 1 21 0 0 0 chr21 43947829 43947850 -959720 + AT_rich Low_complexity Low_complexity 1 21 0 371 262 167 6 chr21 43947877 43948045 -959525 + HAL1 LINE L1 17 211 -2296 427 176 5 78 chr21 43948048 43948241 -959329 + (TG)n Simple_repeat Simple_repeat 1 179 0 719 231 92 44 chr21 43948850 43949145 -958425 + HAL1 LINE L1 2199 2507 0 22 0 0 0 chr21 43949165 43949187 -958383 + AT_rich Low_complexity Low_complexity 1 22 0 449 283 107 36 chr21 43949429 43949793 -957777 - L1ME4a LINE L1 -217 5904 5515 867 290 135 49 chr21 43950055 43950649 -956921 - L1ME4a LINE L1 -1128 5018 4374 304 321 81 29 chr21 43950791 43951037 -956533 - L1ME4a LINE L1 -2099 4047 3789 354 217 0 0 chr21 43951095 43951215 -956355 + (TTAGGG)n Simple_repeat Simple_repeat 6 125 0 472 290 96 107 chr21 43951216 43951678 -955892 - L1ME4a LINE L1 -2437 3709 3277 1410 195 59 7 chr21 43951678 43951965 -955605 - AluJo SINE Alu 0 302 1 472 290 96 107 chr21 43951965 43952326 -955244 - L1ME4a LINE L1 -2869 3277 2914 2414 123 19 6 chr21 43954482 43954841 -952729 - THE1B LTR MaLR 0 364 1 257 320 47 31 chr21 43956275 43956403 -951167 + MIR3 SINE MIR 12 141 -67 233 221 73 44 chr21 43956739 43956807 -950763 - L1ME LINE L1 -537 5584 5515 764 300 78 70 chr21 43957296 43958344 -949226 - L1MC4a LINE L1 -182 7740 6715 198 0 0 0 chr21 43958344 43958366 -949204 + (TG)n Simple_repeat Simple_repeat 2 23 0 764 300 78 70 chr21 43958366 43958400 -949170 - L1MC4a LINE L1 -1207 6715 6683 623 282 19 19 chr21 43958468 43958677 -948893 - MER63A DNA MER1_type 0 210 2 500 178 40 0 chr21 43958793 43958894 -948676 - L1MB4 LINE L1 -1 6179 6075 862 280 133 32 chr21 43958902 43959488 -948082 - L1MC4a LINE L1 -1910 5967 5323 522 248 145 86 chr21 43959712 43960340 -947230 - L1MC4a LINE L1 -2920 3295 2581 1472 147 56 35 chr21 43960340 43960625 -946945 + AluJo SINE Alu 22 312 0 522 248 145 86 chr21 43960625 43961030 -946540 - L1MC4a LINE L1 -3634 2581 2201 23 0 0 0 chr21 43961524 43961547 -946023 + AT_rich Low_complexity Low_complexity 1 23 0 457 252 67 29 chr21 43962180 43962418 -945152 - L1MC4a LINE L1 -4784 1612 1366 2807 232 69 40 chr21 43962430 43963996 -943574 - L1MB8 LINE L1 0 6178 4558 5398 197 112 32 chr21 43964038 43965356 -942214 - L1MB7 LINE L1 -18 6166 4955 1850 107 45 10 chr21 43965356 43965645 -941925 - AluSx SINE Alu -13 299 1 5398 197 112 32 chr21 43965645 43966853 -940717 - L1MB7 LINE L1 -1229 4955 3426 866 266 89 26 chr21 43967052 43967474 -940096 + L1ME3 LINE L1 1331 1823 -4784 406 65 226 0 chr21 43967474 43967536 -940034 + MADE1 DNA Mariner 1 76 -4 866 266 89 26 chr21 43967536 43967617 -939953 + L1ME3 LINE L1 1823 1897 -4710 979 194 6 0 chr21 43967638 43967808 -939762 - FAM SINE Alu -4 171 1 421 253 58 65 chr21 43968109 43968263 -939307 + L1ME3 LINE L1 2308 2500 -3966 2146 76 38 3 chr21 43968272 43968560 -939010 + AluSq SINE Alu 1 298 -15 333 298 247 48 chr21 43968678 43968970 -938600 - L1MEd LINE L1 -4876 1243 894 1078 243 177 54 chr21 43969513 43969946 -937624 - MLT1F1 LTR MaLR -8 559 56 1699 118 62 42 chr21 43969946 43970252 -937318 - AluSx SINE Alu 0 312 1 1078 243 177 54 chr21 43970252 43970316 -937254 - MLT1F1 LTR MaLR -511 56 1 2376 80 3 0 chr21 43971578 43971890 -935680 - AluSp SINE Alu 0 313 1 818 241 125 43 chr21 43973731 43974076 -933494 + MLT1A2 LTR MaLR 2 374 0 2623 191 80 15 chr21 43974515 43975106 -932464 - L1MB5 LINE L1 -1 6173 5545 253 224 132 0 chr21 43975107 43975183 -932387 - MIR SINE MIR -96 166 81 252 319 21 32 chr21 43978822 43978916 -928654 + L3 LINE CR1 903 995 -582 1759 255 43 2 chr21 43978933 43979446 -928124 + L1ME3 LINE L1 4117 4650 -1776 13135 185 40 50 chr21 43979454 43981591 -925979 - L1MA4A LINE L1 -5 7000 4842 2025 93 59 14 chr21 43981591 43981880 -925690 + AluSc SINE Alu 1 302 -7 13135 185 40 50 chr21 43981880 43982868 -924702 - L1MA4A LINE L1 -2163 4842 3845 1620 166 6 34 chr21 43982868 43983188 -924382 - AluJo SINE Alu -1 311 1 13135 185 40 50 chr21 43983188 43987065 -920505 - L1MA4A LINE L1 -3160 3845 3 2506 231 149 29 chr21 43987070 43987778 -919792 + L1ME3 LINE L1 4651 5273 -1173 4863 168 22 21 chr21 43987778 43988678 -918892 + MER54A LTR ERVL 1 901 0 2506 231 149 29 chr21 43988678 43989234 -918336 + L1ME3 LINE L1 5273 6080 -366 241 280 0 0 chr21 43989249 43989324 -918246 + L1ME3 LINE L1 6352 6426 -16 560 235 104 44 chr21 43989324 43989507 -918063 - L1ME1 LINE L1 -187 5979 5786 447 292 64 63 chr21 43989534 43990272 -917298 + L1ME LINE L1 546 1332 -4929 226 261 34 23 chr21 43990323 43990411 -917159 - L1ME1 LINE L1 -487 5683 5595 371 238 55 15 chr21 43990627 43990786 -916784 - L1P5 LINE L1 -690 5461 5299 239 279 12 12 chr21 43990800 43990886 -916684 + HAL1b LINE L1 403 488 -860 274 261 0 39 chr21 43991804 43991934 -915636 + CT-rich Low_complexity Low_complexity 3 127 0 6726 60 10 26 chr21 43991935 43993595 -913975 + SVA Other Other 35 1350 -36 246 32 0 0 chr21 43993595 43993626 -913944 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6726 60 10 26 chr21 43993626 43993662 -913908 + SVA Other Other 1350 1385 -1 2127 120 0 0 chr21 43993758 43994059 -913511 - AluSq SINE Alu -12 301 1 241 257 171 13 chr21 43994463 43994615 -912955 + MIR SINE MIR 74 249 -13 1732 142 0 40 chr21 43994723 43995025 -912545 - AluJo SINE Alu -22 290 1 225 299 26 13 chr21 43996444 43996521 -911049 - L2 LINE L2 -4 3268 3191 221 314 0 4 chr21 43996630 43996877 -910693 + (TG)n Simple_repeat Simple_repeat 1 245 0 486 309 195 37 chr21 43996932 43997326 -910244 - L2 LINE L2 -232 3081 2751 2344 57 0 3 chr21 43997326 43997626 -909944 + AluY SINE Alu 1 299 -12 486 309 195 37 chr21 43997626 43999068 -908502 - L2 LINE L2 -562 2751 964 450 308 6 0 chr21 44001187 44001356 -906214 + HAL1 LINE L1 1491 1660 -847 995 221 0 0 chr21 44001708 44001889 -905681 + AluJo SINE Alu 107 287 -25 2492 68 0 0 chr21 44002116 44002411 -905159 + AluY SINE Alu 1 295 -16 317 373 114 10 chr21 44002543 44002736 -904834 + L1M4 LINE L1 2418 2630 -3516 204 217 0 0 chr21 44002772 44002818 -904752 + T-rich Low_complexity Low_complexity 3 48 0 481 359 111 47 chr21 44002838 44003792 -903778 + L1M4 LINE L1 2704 3766 -2380 429 324 45 64 chr21 44003813 44004290 -903280 - HAL1b LINE L1 -1104 3215 1 355 262 66 0 chr21 44004478 44004600 -902970 + L1MC4 LINE L1 7741 7870 -172 213 132 0 0 chr21 44004713 44004751 -902819 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 396 322 11 11 chr21 44004769 44004949 -902621 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 232 248 8 8 chr21 44005002 44005131 -902439 + (TGGA)n Simple_repeat Simple_repeat 1 129 0 358 280 3 16 chr21 44005143 44005467 -902103 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 289 263 0 17 chr21 44005479 44005854 -901716 + (TGGA)n Simple_repeat Simple_repeat 1 368 0 282 238 0 18 chr21 44005866 44006030 -901540 + (TGGA)n Simple_repeat Simple_repeat 1 161 0 183 255 0 20 chr21 44006102 44006255 -901315 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 223 284 0 14 chr21 44006267 44006341 -901229 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 * 233 369 0 19 chr21 44006301 44006461 -901109 + (TGAG)n Simple_repeat Simple_repeat 2 158 0 * 473 266 0 43 chr21 44006365 44006553 -901017 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 349 314 25 8 chr21 44006634 44006752 -900818 + L1MC4 LINE L1 7923 8042 0 1293 170 206 4 chr21 44006767 44007044 -900526 + MER44D DNA MER2_type 1 603 -6 9571 72 7 0 chr21 44014520 44016659 -890911 + L1PA7 LINE L1 4003 6143 -11 311 265 20 0 chr21 44016801 44016899 -890671 - LTR33A LTR ERVL -8 515 416 705 273 43 0 chr21 44017253 44017440 -890130 + MLT1E1 LTR MaLR 3 197 -457 906 282 83 14 chr21 44017508 44017687 -889883 - L1MEc LINE L1 -2180 4035 3870 279 71 0 0 chr21 44017687 44017729 -889841 + (TG)n Simple_repeat Simple_repeat 1 42 0 1650 148 0 82 chr21 44017729 44018033 -889537 - AluJo SINE Alu -33 279 1 906 282 83 14 chr21 44018033 44018631 -888939 - L1MEc LINE L1 -2344 3871 3191 818 255 158 14 chr21 44018663 44019012 -888558 - MLT1D LTR MaLR -30 475 77 808 280 77 23 chr21 44019020 44019650 -887920 - L1MEc LINE L1 -3690 2525 1903 857 106 16 0 chr21 44019652 44019775 -887795 - MER4D LTR ERV1 -2 870 746 1000 287 49 70 chr21 44019784 44019887 -887683 - L1MEc LINE L1 -4598 1798 1694 2052 92 51 0 chr21 44019887 44020160 -887410 - AluSx SINE Alu -25 287 1 1000 287 49 70 chr21 44020160 44020911 -886659 - L1MEc LINE L1 -4702 1694 966 2298 106 0 7 chr21 44020911 44021212 -886358 - AluSx SINE Alu -13 299 1 1000 287 49 70 chr21 44021212 44021375 -886195 - L1MEc LINE L1 -5430 966 801 3602 115 19 280 chr21 44021388 44021912 -885658 - Tigger3b DNA MER2_type -1798 1231 572 680 0 119 0 chr21 44021912 44022072 -885498 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 3602 115 19 280 chr21 44022072 44022107 -885463 - Tigger3b DNA MER2_type -2457 572 530 778 3 108 0 chr21 44022107 44022505 -885065 + (TGAG)n Simple_repeat Simple_repeat 1 440 0 3602 115 19 280 chr21 44022505 44022580 -884990 - Tigger3b DNA MER2_type -2499 530 437 769 5 107 0 chr21 44022580 44023001 -884569 + (TGAG)n Simple_repeat Simple_repeat 1 466 0 3602 115 19 280 chr21 44023001 44023025 -884545 - Tigger3b DNA MER2_type -2592 437 409 729 0 112 0 chr21 44023025 44023186 -884384 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 3602 115 19 280 chr21 44023186 44023200 -884370 - Tigger3b DNA MER2_type -2620 409 393 757 7 106 0 chr21 44023200 44023617 -883953 + (TGAG)n Simple_repeat Simple_repeat 1 461 0 3602 115 19 280 chr21 44023617 44024548 -883022 - Tigger3b DNA MER2_type -2636 393 2 1361 196 103 40 chr21 44025325 44025491 -882079 - L1MC2 LINE L1 -1 6343 6189 2341 81 7 0 chr21 44025491 44025788 -881782 - AluY SINE Alu -12 299 1 1361 196 103 40 chr21 44025788 44026018 -881552 - L1MC2 LINE L1 -155 6189 5922 364 207 12 12 chr21 44026001 44026083 -881487 - L1MC1 LINE L1 -704 5629 5548 * 3339 186 56 1 chr21 44026083 44026774 -880796 + L1MC1 LINE L1 5596 6325 -8 863 224 43 9 chr21 44030218 44030450 -877120 - L1MC3 LINE L1 -289 7496 7257 2265 121 0 6 chr21 44031196 44031510 -876060 - AluSx SINE Alu 0 312 1 282 301 73 15 chr21 44031517 44031653 -875917 - L1M4b LINE L1 -6694 165 22 2221 84 49 0 chr21 44033458 44033742 -873828 + AluSp SINE Alu 1 298 -15 247 348 43 18 chr21 44033848 44034012 -873558 + L1ME2 LINE L1 5830 5997 -167 * 1419 274 72 33 chr21 44033992 44034478 -873092 + L1MDa LINE L1 20 524 -6016 963 273 100 26 chr21 44034650 44035108 -872462 + L1MDa LINE L1 865 1356 -5184 254 238 16 0 chr21 44035105 44035168 -872402 + L1MA10 LINE L1 6263 6326 -8 * 290 332 140 5 chr21 44035386 44035579 -871991 - MLT1I LTR MaLR -16 393 175 1168 169 5 5 chr21 44038704 44038905 -868665 + AluJb SINE Alu 110 310 -2 3303 120 96 29 chr21 44039078 44039186 -868384 - MER41B LTR ERV1 0 635 536 2180 123 0 0 chr21 44039186 44039479 -868091 - AluSx SINE Alu -19 293 1 3303 120 96 29 chr21 44039479 44039963 -867607 - MER41B LTR ERV1 -99 536 3 2229 98 52 30 chr21 44040179 44040546 -867024 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr21 44044204 44044227 -863343 + AT_rich Low_complexity Low_complexity 1 23 0 418 298 116 44 chr21 44044437 44044712 -862858 - L1ME LINE L1 -439 5723 5429 371 308 129 5 chr21 44044713 44044937 -862633 + MLT1G1 LTR MaLR 38 289 -306 858 249 51 99 chr21 44045333 44045867 -861703 - L1MC5 LINE L1 -728 7233 6734 180 0 0 0 chr21 44045867 44045887 -861683 + (TAA)n Simple_repeat Simple_repeat 1 20 0 858 249 51 99 chr21 44045887 44045995 -861575 - L1MC5 LINE L1 -1227 6734 6622 30 77 0 0 chr21 44046015 44046080 -861490 + AT_rich Low_complexity Low_complexity 1 65 0 317 287 124 75 chr21 44046100 44046521 -861049 - L1MC4a LINE L1 -1327 6481 5949 347 296 92 74 chr21 44046646 44047092 -860478 - HAL1b LINE L1 -441 907 454 2037 117 72 65 chr21 44047097 44047152 -860418 + Tigger3(Golem) DNA MER2_type 2285 2338 -690 2262 101 0 10 chr21 44047152 44047450 -860120 - AluSq SINE Alu -13 300 6 2037 117 72 65 chr21 44047450 44047639 -859931 + Tigger3(Golem) DNA MER2_type 2338 2524 -504 2490 72 0 16 chr21 44047639 44047945 -859625 + AluY SINE Alu 1 301 -10 2037 117 72 65 chr21 44047945 44048160 -859410 + Tigger3(Golem) DNA MER2_type 2524 2748 -280 1294 197 40 0 chr21 44048160 44048383 -859187 - AluJb SINE Alu -80 232 1 1537 151 29 18 chr21 44048390 44048669 -858901 + Tigger3(Golem) DNA MER2_type 2747 3028 -1 330 394 31 6 chr21 44048699 44048859 -858711 - HAL1b LINE L1 -1184 164 1 213 39 0 0 chr21 44049858 44049884 -857686 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1366 266 65 55 chr21 44049959 44050730 -856840 - L1MDa LINE L1 -5353 1187 20 392 306 111 6 chr21 44050777 44051137 -856433 - L1M4 LINE L1 -2886 3260 2863 452 352 35 44 chr21 44051154 44051469 -856101 - L1M4 LINE L1 -3315 2831 2520 190 207 0 36 chr21 44052271 44052411 -855159 + (TA)n Simple_repeat Simple_repeat 2 136 0 358 318 0 23 chr21 44052916 44053089 -854481 + (TG)n Simple_repeat Simple_repeat 1 169 0 224 333 0 26 chr21 44053105 44053222 -854348 + (TG)n Simple_repeat Simple_repeat 2 115 0 375 358 62 62 chr21 44053834 44054289 -853281 - L1 LINE L1 -3372 2774 2320 642 335 86 18 chr21 44054991 44055505 -852065 - HAL1b LINE L1 -766 582 34 1577 151 79 3 chr21 44055531 44055822 -851748 - MER51B LTR ERV1 -2 375 63 362 179 65 68 chr21 44055880 44056022 -851548 - MER51A LTR ERV1 -236 141 1 2024 97 7 26 chr21 44056667 44056975 -850595 - AluSx SINE Alu -10 302 1 35 24 0 0 chr21 44057080 44057122 -850448 + AT_rich Low_complexity Low_complexity 1 42 0 482 292 122 50 chr21 44058319 44058702 -848868 + L1M4 LINE L1 2794 3148 -2998 2130 102 10 0 chr21 44058702 44058995 -848575 + AluSg SINE Alu 1 296 -14 482 292 122 50 chr21 44058995 44059076 -848494 + L1M4 LINE L1 3148 3222 -2924 288 77 0 0 chr21 44059076 44059115 -848455 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 482 292 122 50 chr21 44059115 44059409 -848161 + L1M4 LINE L1 3222 3608 -2538 1622 161 42 0 chr21 44059429 44059715 -847855 + L1MA6 LINE L1 6002 6299 -1 387 182 52 0 chr21 44059762 44059839 -847731 + MLT1D LTR MaLR 313 393 -112 235 227 0 0 chr21 44059834 44059878 -847692 + MLT1D LTR MaLR 350 393 -112 * 235 227 0 0 chr21 44059951 44059995 -847575 + MLT1D LTR MaLR 350 393 -112 * 246 204 0 0 chr21 44059990 44060034 -847536 + MLT1D LTR MaLR 350 393 -112 229 227 0 0 chr21 44060029 44060073 -847497 + MLT1D LTR MaLR 350 393 -112 * 240 204 0 0 chr21 44060146 44060190 -847380 + MLT1D LTR MaLR 350 393 -112 553 189 182 0 chr21 44060224 44060356 -847214 + MLT1D LTR MaLR 350 505 0 299 223 87 19 chr21 44060365 44060468 -847102 + L1M LINE L1 5313 5422 -2386 1619 103 12 4 chr21 44060822 44061065 -846505 - MER51A LTR ERV1 -1 633 389 358 164 16 156 chr21 44061036 44061158 -846412 - MER51B LTR ERV1 -272 105 1 * 1730 216 126 0 chr21 44061736 44062158 -845412 - L1MB3 LINE L1 -2 6181 5707 355 225 0 0 chr21 44062173 44062253 -845317 - L1MB3 LINE L1 -1727 4419 4340 2716 181 13 33 chr21 44063317 44063863 -843707 + MER4E LTR ERV1 2 536 -243 2072 185 41 17 chr21 44063863 44064132 -843438 + MSTB LTR MaLR 1 285 -141 5032 116 44 4 chr21 44064132 44064881 -842689 - MER4E LTR ERV1 0 779 1 2072 185 41 17 chr21 44064881 44065027 -842543 + MSTB LTR MaLR 285 426 0 1034 181 84 26 chr21 44065029 44065255 -842315 + MER4E LTR ERV1 541 779 0 626 253 28 6 chr21 44065575 44065757 -841813 - MER4C LTR ERV1 0 465 280 977 190 47 107 chr21 44065785 44066149 -841421 - MER4A LTR ERV1 -322 342 1 2823 90 0 6 chr21 44066190 44066556 -841014 + THE1B LTR MaLR 1 364 0 289 224 239 0 chr21 44067991 44068125 -839445 + L1MD3 LINE L1 6781 6946 -1049 947 225 59 119 chr21 44069302 44069689 -837881 - MLT1A1 LTR MaLR -1 364 1 277 288 30 68 chr21 44073567 44073699 -833871 + MER5A DNA MER1_type 1 127 -62 203 298 0 0 chr21 44074241 44074298 -833272 + C-rich Low_complexity Low_complexity 1 57 0 198 71 0 0 chr21 44075874 44075902 -831668 + (T)n Simple_repeat Simple_repeat 1 28 0 407 282 66 86 chr21 44077414 44077817 -829753 - L1M3c LINE L1 -2854 3356 1032 1346 168 180 0 chr21 44081263 44081519 -826051 - AluJb SINE Alu 0 302 1 557 55 0 0 chr21 44081523 44081596 -825974 - AluJ/FLAM SINE Alu -238 74 2 348 292 63 31 chr21 44081601 44081962 -825608 - L1MDa LINE L1 -1353 5073 4654 1610 85 8 13 chr21 44081962 44082198 -825372 - AluSg/x SINE Alu 0 310 76 348 292 63 31 chr21 44082198 44082235 -825335 - L1MDa LINE L1 -1772 4654 4620 1932 119 39 7 chr21 44084991 44085277 -822293 + AluSq SINE Alu 1 295 -18 660 312 52 55 chr21 44086066 44086450 -821120 + L1MDb LINE L1 775 1159 -5250 180 0 0 0 chr21 44086450 44086470 -821100 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1624 167 7 3 chr21 44086472 44086754 -820816 - AluJo SINE Alu -29 283 1 660 312 52 55 chr21 44086754 44086965 -820605 + L1MDb LINE L1 1160 1371 -5038 1188 254 75 11 chr21 44086969 44087438 -820132 + L1MDb LINE L1 2931 3429 -2977 281 270 10 40 chr21 44088047 44088147 -819423 - L2 LINE L2 -15 3257 3161 696 275 50 32 chr21 44088508 44088788 -818782 - L1MDa LINE L1 -2120 4306 4022 410 62 78 0 chr21 44088793 44088857 -818713 - L1MA7 LINE L1 -75 6216 6148 750 214 45 7 chr21 44088857 44089011 -818559 - AluJb SINE Alu -106 206 47 281 149 0 0 chr21 44089015 44089062 -818508 + FLAM SINE Alu 86 132 -1 3887 186 52 13 chr21 44089065 44090382 -817188 - L1MA8 LINE L1 -162 6129 4759 3076 247 30 18 chr21 44090381 44091395 -816175 - L1MDa LINE L1 -3010 3416 2380 * 1787 171 13 7 chr21 44091395 44091705 -815865 - AluJo SINE Alu 0 312 1 3076 247 30 18 chr21 44091705 44091881 -815689 - L1MDa LINE L1 -4046 2380 2208 335 271 17 14 chr21 44091907 44092024 -815546 - L1MDa LINE L1 -1339 6983 1995 1277 130 5 15 chr21 44092045 44092245 -815325 - AluJb SINE Alu -27 285 88 4446 204 63 155 chr21 44092245 44094803 -812767 - L1MDa LINE L1 -4212 2328 5 293 360 71 10 chr21 44094817 44095014 -812556 + MIR SINE MIR 19 227 -35 252 321 36 27 chr21 44095171 44095283 -812287 - L1ME LINE L1 -469 5652 5540 252 318 55 0 chr21 44097679 44097789 -809781 + L1ME LINE L1 5435 5550 -612 910 306 73 38 chr21 44098572 44099079 -808491 + L1ME1 LINE L1 5494 6018 -148 406 325 97 45 chr21 44099437 44099901 -807669 - LTR24 LTR ERV1 -2 574 87 273 274 19 38 chr21 44102083 44102189 -805381 + MER3 DNA MER1_type 3 106 -103 21 71 0 0 chr21 44102348 44102390 -805180 + AT_rich Low_complexity Low_complexity 1 42 0 226 308 13 0 chr21 44104646 44104724 -802846 - L1MC4 LINE L1 -207 7835 7757 229 167 42 0 chr21 44105124 44105172 -802398 - L1MC4 LINE L1 -1168 6874 6825 266 161 204 32 chr21 44107781 44107874 -799696 + MIR SINE MIR 35 143 -65 802 111 0 13 chr21 44109103 44109256 -798314 + (GA)n Simple_repeat Simple_repeat 1 151 0 495 235 45 20 chr21 44109390 44109669 -797901 - MER89 LTR ERV1 0 559 249 9441 232 53 61 chr21 44109851 44112863 -794707 - LTR24-int LTR ERV1 0 6801 3814 1477 212 52 0 chr21 44112976 44113321 -794249 - MLT1B LTR MaLR 0 390 28 661 320 100 12 chr21 44113410 44113844 -793726 - LTR24-int LTR ERV1 -4019 2782 171 1508 282 96 68 chr21 44114012 44115927 -791643 - MER89-int LTR ERV1 -4277 2524 458 191 342 114 0 chr21 44122630 44122744 -784826 - MIR SINE MIR -72 190 64 258 193 0 0 chr21 44127284 44127341 -780229 + (TG)n Simple_repeat Simple_repeat 1 57 0 1259 232 2 113 chr21 44127991 44128400 -779170 + MLT1A1 LTR MaLR 1 364 -1 1991 126 3 10 chr21 44129031 44129325 -778245 + AluSx SINE Alu 1 292 -20 1775 182 0 3 chr21 44129769 44130066 -777504 + AluJo SINE Alu 1 296 -16 224 345 55 41 chr21 44130223 44130368 -777202 - MIR SINE MIR -77 185 39 537 293 104 94 chr21 44132805 44133374 -774196 + L1ME3A LINE L1 2240 2805 -3621 311 343 9 9 chr21 44133493 44133601 -773969 + L1ME3A LINE L1 2981 3088 -3338 1679 219 58 0 chr21 44133602 44133995 -773575 + Tigger3b DNA MER2_type 1 416 -815 301 348 62 5 chr21 44134180 44134404 -773166 + L1ME3A LINE L1 5230 5466 -960 310 265 98 20 chr21 44134449 44134551 -773019 + L1ME3A LINE L1 5535 5644 -995 253 290 16 40 chr21 44134582 44134706 -772864 + L1ME3A LINE L1 6328 6448 -2 357 158 0 32 chr21 44134760 44134855 -772715 + CT-rich Low_complexity Low_complexity 3 94 0 306 307 150 7 chr21 44134955 44135108 -772462 - MIR3 SINE MIR -23 185 11 181 214 48 0 chr21 44135262 44135304 -772266 - MIR3 SINE MIR -54 154 111 206 222 0 0 chr21 44137638 44137683 -769887 + (CTGGGG)n Simple_repeat Simple_repeat 5 49 0 204 167 0 0 chr21 44148412 44148460 -759110 + (CGGGA)n Simple_repeat Simple_repeat 2 49 0 572 278 62 38 chr21 44152603 44152894 -754676 - MLT1A1 LTR MaLR -38 327 30 994 269 115 50 chr21 44152938 44153477 -754093 + MLT1E LTR MaLR 3 576 -17 2145 94 7 3 chr21 44154386 44154696 -752874 - AluSq SINE Alu 0 313 4 376 243 40 75 chr21 44154732 44154905 -752665 - MER69 DNA AcHobo -1503 1023 857 2062 98 14 10 chr21 44157123 44157419 -750151 + AluJb SINE Alu 1 297 -15 362 258 58 25 chr21 44158479 44158599 -748971 - HAL1b LINE L1 -462 886 763 422 282 50 119 chr21 44158930 44159267 -748303 - L1MCb LINE L1 -5682 363 50 1848 213 72 9 chr21 44159267 44159714 -747856 - LTR39 LTR ERV1 0 783 309 683 188 16 65 chr21 44159742 44159853 -747717 - LTR39 LTR ERV1 -560 223 123 3008 36 20 0 chr21 44159853 44160210 -747360 - L1PA4 LINE L1 -3 6152 5789 683 188 16 65 chr21 44160210 44160284 -747286 - LTR39 LTR ERV1 -660 123 47 448 279 151 6 chr21 44160363 44160525 -747045 - L1M4 LINE L1 -1821 4325 4133 3413 79 77 12 chr21 44160525 44161007 -746563 - LTR10D LTR ERV1 0 513 1 448 279 151 6 chr21 44161007 44161023 -746547 - L1M4 LINE L1 -2013 4133 4121 365 332 80 24 chr21 44161036 44161286 -746284 - L1M4 LINE L1 -2154 3992 3729 4314 122 44 3 chr21 44161348 44161979 -745591 + PABL_A LTR ERV1 4 660 0 772 249 105 46 chr21 44162236 44162521 -745049 - L1M4 LINE L1 -2800 3346 3045 1036 157 0 0 chr21 44162523 44162682 -744888 - FRAM SINE Alu 0 40 1 1760 119 93 16 chr21 44162682 44163211 -744359 - LTR10E LTR ERV1 0 633 6 836 173 6 36 chr21 44163211 44163379 -744191 - AluJo SINE Alu -149 163 1 579 301 45 18 chr21 44163389 44163725 -743845 - L1M4 LINE L1 -3126 3020 2676 525 225 16 84 chr21 44163817 44164008 -743562 + MLT1E2 LTR MaLR 1 178 -448 306 245 10 59 chr21 44164109 44164150 -743420 + HERVL40 LTR ERVL 5432 5473 -57 2224 182 41 10 chr21 44164150 44164563 -743007 - MSTB LTR MaLR 0 426 1 306 245 10 59 chr21 44164563 44164623 -742947 + HERVL40 LTR ERVL 5473 5528 -2 1164 212 71 83 chr21 44164626 44165046 -742524 + LTR40a LTR ERVL 2 416 -103 545 234 30 80 chr21 44165059 44165222 -742348 - MER34C LTR ERV1 -235 350 197 1897 157 3 0 chr21 44165222 44165521 -742049 + AluJo SINE Alu 9 308 -4 545 234 30 80 chr21 44165521 44165558 -742012 - MER34C LTR ERV1 -388 197 160 412 223 41 0 chr21 44165864 44165985 -741585 - MER31-int LTR ERV1 -4517 419 294 281 253 0 46 chr21 44166378 44166465 -741105 - L1ME4a LINE L1 -72 6049 5967 381 223 76 46 chr21 44166509 44166706 -740864 + L1ME3 LINE L1 4962 5164 -982 997 343 74 5 chr21 44166766 44167372 -740198 + L1ME3 LINE L1 5293 5940 -222 2681 91 8 6 chr21 44167979 44168342 -739228 - THE1B LTR MaLR 0 364 1 8033 97 144 13 chr21 44168342 44169739 -737831 - THE1B-int LTR MaLR 0 1580 1 1655 78 0 4 chr21 44169739 44169970 -737600 - THE1B LTR MaLR 0 364 135 1661 156 14 7 chr21 44169970 44170310 -737260 - MER61C LTR ERV1 0 434 1 965 106 0 0 chr21 44170310 44170448 -737122 - THE1B LTR MaLR -226 138 1 383 337 79 6 chr21 44170461 44170639 -736931 - MIR SINE MIR -52 210 20 437 305 87 50 chr21 44170747 44171209 -736361 + L1MC4a LINE L1 4381 4825 -1321 2479 133 78 5 chr21 44171209 44171607 -735963 + MSTA LTR MaLR 1 427 -1 10393 154 24 9 chr21 44171608 44173234 -734336 + MSTA-int LTR MaLR 1 1651 0 2286 131 36 72 chr21 44173234 44173630 -733940 + MSTA LTR MaLR 1 381 -47 2282 109 0 3 chr21 44173630 44173943 -733627 - AluSq SINE Alu -1 312 1 2286 131 36 72 chr21 44173943 44173990 -733580 + MSTA LTR MaLR 381 428 0 437 305 87 50 chr21 44173990 44174078 -733492 + L1MC4a LINE L1 4824 4954 -1192 898 144 189 9 chr21 44174144 44174366 -733204 + MER21A LTR ERV1 3 264 -667 1941 202 126 14 chr21 44174371 44174871 -732699 + MER21A LTR ERV1 376 931 0 1913 259 105 69 chr21 44174874 44175257 -732313 + L1MC4a LINE L1 4964 5332 -814 2712 10 0 0 chr21 44175257 44175559 -732011 + AluYa5 SINE Alu 1 302 -9 1913 259 105 69 chr21 44175559 44176384 -731186 + L1MC4a LINE L1 5332 5148 -998 1847 129 30 20 chr21 44176384 44176679 -730891 + AluSx SINE Alu 1 298 -14 1913 259 105 69 chr21 44176679 44176946 -730624 + L1MC4a LINE L1 5147 5403 -743 1503 248 39 31 chr21 44176995 44177378 -730192 + MLT1B LTR MaLR 1 386 -4 465 188 10 23 chr21 44177443 44177573 -729997 - LTR24 LTR ERV1 0 467 308 473 261 153 0 chr21 44177598 44177774 -729796 + L1MC4 LINE L1 7446 7648 -394 265 303 84 8 chr21 44179554 44179673 -727897 - MIR3 SINE MIR -76 132 5 225 0 0 0 chr21 44181134 44181159 -726411 + (T)n Simple_repeat Simple_repeat 1 25 0 9102 49 2 2 chr21 44183134 44184205 -723365 - MER11C LTR ERVK 0 1071 1 249 33 0 0 chr21 44184502 44184532 -723038 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 271 205 26 17 chr21 44184708 44184825 -722745 + CT-rich Low_complexity Low_complexity 6 123 0 507 186 39 0 chr21 44185268 44185424 -722146 + GA-rich Low_complexity Low_complexity 2 163 0 406 245 4 41 chr21 44185454 44185742 -721828 + G-rich Low_complexity Low_complexity 1 277 0 307 236 13 17 chr21 44185749 44185990 -721580 + GA-rich Low_complexity Low_complexity 1 240 0 2293 86 0 0 chr21 44186262 44186553 -721017 + AluSx SINE Alu 5 295 -17 1814 148 4 4 chr21 44187379 44187656 -719914 + AluJb SINE Alu 1 277 -35 285 98 0 0 chr21 44187677 44187718 -719852 + (GGA)n Simple_repeat Simple_repeat 3 43 0 346 387 89 28 chr21 44188039 44188599 -718971 - L1M4c LINE L1 -1216 1527 961 743 89 30 18 chr21 44189070 44189238 -718332 + (TCCCC)n Simple_repeat Simple_repeat 3 172 0 233 200 22 0 chr21 44191236 44191281 -716289 + MIR SINE MIR 100 145 -117 393 350 108 32 chr21 44192116 44192909 -714661 + L1M4c LINE L1 795 1525 -1218 228 312 0 48 chr21 44194795 44194920 -712650 + (TCTG)n Simple_repeat Simple_repeat 1 119 0 321 280 35 35 chr21 44196142 44196285 -711285 + Charlie8 DNA MER1_type 40 182 -2235 374 302 17 34 chr21 44197942 44198121 -709449 + (GGGTG)n Simple_repeat Simple_repeat 5 180 0 298 206 62 10 chr21 44198912 44199009 -708561 + (CGGG)n Simple_repeat Simple_repeat 3 104 0 287 297 0 0 chr21 44208085 44208176 -699394 + G-rich Low_complexity Low_complexity 1 91 0 307 135 32 136 chr21 44213372 44213929 -693641 - TAR1 Satellite telomeric -550 1561 1063 198 309 52 41 chr21 44214178 44214275 -693295 + MIR SINE MIR 85 182 -80 1798 154 70 54 chr21 44215448 44215499 -692071 - THE1C LTR MaLR 0 375 326 2433 57 3 16 chr21 44215499 44215814 -691756 - AluY SINE Alu 0 311 1 1798 154 70 54 chr21 44215814 44216131 -691439 - THE1C LTR MaLR -49 326 1 256 271 132 61 chr21 44217667 44217947 -689623 + L1ME LINE L1 5411 5710 -454 382 221 121 0 chr21 44217970 44218110 -689460 + MLT1E1 LTR MaLR 428 584 -70 489 206 0 0 chr21 44219202 44219309 -688261 + (TG)n Simple_repeat Simple_repeat 1 107 0 726 162 12 52 chr21 44219717 44219890 -687680 + L1MC4 LINE L1 7689 7854 -188 2284 229 70 6 chr21 44220313 44221398 -686172 - L1ME LINE L1 -464 6096 4936 1038 223 22 15 chr21 44221412 44221685 -685885 - MSTB2 LTR MaLR 0 457 183 1849 237 62 28 chr21 44221718 44222394 -685176 - L1ME LINE L1 -1630 4910 4212 4492 180 33 38 chr21 44222416 44223811 -683759 - L1MD1 LINE L1 -8 6628 5245 338 202 219 10 chr21 44223810 44223976 -683594 - L1MD1 LINE L1 -4963 1577 1379 * 942 128 0 14 chr21 44223976 44224124 -683446 - AluSg/x SINE Alu 0 312 167 2340 239 63 41 chr21 44224124 44225372 -682198 - L1MD1 LINE L1 -5157 1383 4 356 321 85 95 chr21 44225382 44225409 -682161 - L1ME LINE L1 -68 2833 2807 1545 170 57 7 chr21 44225409 44225691 -681879 + AluJb SINE Alu 1 296 -16 356 321 85 95 chr21 44225691 44226037 -681533 - L1ME LINE L1 -94 2807 2459 1241 241 50 66 chr21 44226037 44226414 -681156 - MLT1A2 LTR MaLR 0 374 4 356 321 85 95 chr21 44226414 44226566 -681004 - L1ME LINE L1 -442 2459 2307 1793 137 14 7 chr21 44226566 44226858 -680712 - AluSx SINE Alu -18 294 1 356 321 85 95 chr21 44226858 44226998 -680572 - L1ME LINE L1 -594 2307 1995 303 310 64 13 chr21 44227481 44227638 -679932 - MIR3 SINE MIR -69 139 15 364 349 21 2 chr21 44228266 44228457 -679113 + MIR SINE MIR 2 240 -22 2638 48 0 0 chr21 44228529 44228840 -678730 + AluY SINE Alu 1 311 0 282 248 43 43 chr21 44229414 44229531 -678039 + MER5B DNA MER1_type 1 117 -61 289 253 50 40 chr21 44230115 44230214 -677356 - MLT1L LTR MaLR -338 277 178 320 343 20 14 chr21 44230695 44230841 -676729 - MIR SINE MIR -85 177 31 287 284 14 5 chr21 44231589 44231744 -675826 + L1ME LINE L1 5669 5824 -297 2079 238 81 11 chr21 44231750 44232455 -675115 + L1ME3 LINE L1 5409 6162 0 308 384 76 17 chr21 44233400 44233572 -673998 + L1ME LINE L1 1373 1554 -5305 225 200 147 11 chr21 44233587 44233682 -673888 + L1ME LINE L1 2045 2152 -4726 467 302 58 62 chr21 44233692 44233950 -673620 + L1ME LINE L1 4060 4316 -2641 3502 232 55 25 chr21 44233957 44234789 -672781 + L1ME LINE L1 4503 5387 -1570 2012 115 49 0 chr21 44234789 44235076 -672494 - AluSx SINE Alu -11 301 1 3502 232 55 25 chr21 44235076 44235507 -672063 + L1ME LINE L1 5387 5804 -1153 776 168 0 0 chr21 44235510 44235629 -671941 + FLAM_A SINE Alu 5 123 -10 406 332 47 32 chr21 44236580 44236770 -670800 - MIR SINE MIR -50 212 20 230 328 25 25 chr21 44236938 44237060 -670510 + MIR3 SINE MIR 3 124 -84 433 307 169 0 chr21 44237159 44237348 -670222 + HAL1 LINE L1 1450 1670 -837 441 339 18 25 chr21 44237605 44237879 -669691 + MLT1-int LTR MaLR 261 532 -839 1311 190 141 25 chr21 44238080 44238407 -669163 + MLT1A1 LTR MaLR 1 365 0 2215 105 0 0 chr21 44238585 44238881 -668689 - AluSc SINE Alu -12 297 2 410 296 153 0 chr21 44239124 44239320 -668250 - L1MB5 LINE L1 -328 5846 5621 1844 287 61 4 chr21 44239331 44240096 -667474 - L1MB5 LINE L1 -708 5470 4662 280 164 49 0 chr21 44240097 44240158 -667412 - MSTB LTR MaLR -360 66 3 509 237 42 53 chr21 44240162 44240352 -667218 + MLT1D LTR MaLR 267 454 -51 425 259 42 6 chr21 44240387 44240553 -667017 + L1ME LINE L1 6163 6334 -647 280 335 35 23 chr21 44240760 44240933 -666637 + L1ME LINE L1 6368 6542 -435 290 205 0 71 chr21 44246927 44246966 -660604 - MER63 DNA MER1_type -52 1009 969 2196 89 10 0 chr21 44246966 44247257 -660313 - AluSx SINE Alu -16 296 3 290 205 0 71 chr21 44247257 44247329 -660241 - MER63 DNA MER1_type -92 969 906 2368 138 25 3 chr21 44248297 44248653 -658917 + THE1B LTR MaLR 1 364 0 284 211 0 13 chr21 44249078 44249154 -658416 + L1MD2 LINE L1 1625 1699 -4841 494 160 0 58 chr21 44249154 44249471 -658099 + (CACAA)n Simple_repeat Simple_repeat 1 298 0 2255 247 91 66 chr21 44249481 44249601 -657969 + L1MD2 LINE L1 1660 1776 -4764 1780 147 48 7 chr21 44249601 44249893 -657677 + AluSx SINE Alu 1 304 -8 2255 247 91 66 chr21 44249893 44249932 -657638 + L1MD2 LINE L1 1776 1813 -4727 1711 111 0 0 chr21 44249932 44250166 -657404 - AluSq SINE Alu -79 234 1 2255 247 91 66 chr21 44250166 44250850 -656720 + L1MD2 LINE L1 1813 2478 -4062 1568 204 10 3 chr21 44250850 44251158 -656412 + AluJb SINE Alu 1 310 -2 2255 247 91 66 chr21 44251158 44251398 -656172 + L1MD2 LINE L1 2478 2711 -3829 1794 53 84 30 chr21 44251398 44251660 -655910 + AluY SINE Alu 21 296 -15 2255 247 91 66 chr21 44251660 44251986 -655584 + L1MD2 LINE L1 2711 3027 -3513 767 161 0 0 chr21 44251986 44252104 -655466 + FLAM_C SINE Alu 1 118 -25 2255 247 91 66 chr21 44252104 44253158 -654412 + L1MD2 LINE L1 3027 4216 -2324 1120 227 122 83 chr21 44253151 44253750 -653820 + L1MD2 LINE L1 6132 6753 0 * 893 144 0 20 chr21 44253751 44253897 -653673 + FLAM_C SINE Alu 1 143 0 816 323 45 18 chr21 44253904 44254304 -653266 + L1ME2 LINE L1 5324 5734 -430 2131 112 0 10 chr21 44254358 44254670 -652900 - AluSx SINE Alu -2 310 2 339 281 146 6 chr21 44254675 44254853 -652717 + L1ME2 LINE L1 5844 6046 -118 693 245 14 4 chr21 44256330 44256511 -651059 + L1ME1 LINE L1 6003 6182 -2 576 263 30 0 chr21 44258781 44258914 -648656 + Charlie1 DNA MER1_type 1 137 -2624 1338 277 58 24 chr21 44258932 44259430 -648140 + Charlie1 DNA MER1_type 2228 2742 -19 472 273 86 29 chr21 44259812 44259951 -647619 + MLT1A2 LTR MaLR 7 153 -237 404 229 35 15 chr21 44259991 44260132 -647438 + MLT1A2 LTR MaLR 247 461 -6 320 299 28 15 chr21 44260234 44260408 -647162 - L1ME2 LINE L1 -12 6154 5980 931 280 88 0 chr21 44260859 44261177 -646393 - L1ME2 LINE L1 -401 5763 5418 219 69 0 0 chr21 44261195 44261224 -646346 + (CA)n Simple_repeat Simple_repeat 2 30 0 835 248 78 40 chr21 44261224 44261567 -646003 - L1ME2 LINE L1 -1351 4795 4434 1926 142 3 3 chr21 44261567 44261876 -645694 - AluJb SINE Alu -3 309 1 835 248 78 40 chr21 44261876 44261928 -645642 - L1ME2 LINE L1 -1712 4434 4385 189 247 0 0 chr21 44262369 44262466 -645104 + CT-rich Low_complexity Low_complexity 3 99 0 229 295 8 16 chr21 44262479 44262601 -644969 + CT-rich Low_complexity Low_complexity 3 123 0 974 104 0 80 chr21 44263113 44263276 -644294 + AluJb SINE Alu 1 150 -162 259 213 16 0 chr21 44265494 44265555 -642015 - LTR37B LTR ERV1 0 468 407 3895 129 45 36 chr21 44268865 44269578 -637992 + LTR8A LTR ERV1 1 719 -8 927 231 100 23 chr21 44270783 44271043 -636527 - MER57A LTR ERV1 0 403 124 405 226 0 38 chr21 44271072 44271178 -636392 - Tigger5 DNA MER2_type 0 2323 2222 345 267 0 0 chr21 44271230 44271305 -636265 - MER57A LTR ERV1 -287 116 42 2129 212 17 15 chr21 44271728 44272195 -635375 + L1MB5 LINE L1 5700 6167 -7 611 171 8 0 chr21 44272195 44272324 -635246 + GA-rich Low_complexity Low_complexity 4 133 0 223 277 185 15 chr21 44273412 44273542 -634028 - MIR3 SINE MIR -6 202 51 250 288 0 0 chr21 44273787 44273853 -633717 - L2 LINE L2 -1 3312 3247 314 305 0 0 chr21 44275521 44275603 -631967 - ERVL LTR ERVL -715 5049 4968 351 310 66 20 chr21 44275641 44275838 -631732 - ERVL LTR ERVL -617 4868 4663 642 242 0 0 chr21 44276039 44276813 -630757 + (TG)n Simple_repeat Simple_repeat 1 774 0 615 228 0 0 chr21 44276835 44277015 -630555 + (TG)n Simple_repeat Simple_repeat 1 180 0 578 316 53 0 chr21 44277104 44277294 -630276 - L1MC4a LINE L1 -1225 6583 6384 2110 115 0 31 chr21 44277914 44278236 -629334 + AluSx SINE Alu 1 312 0 211 238 48 16 chr21 44278965 44279028 -628542 + MIR3 SINE MIR 8 72 -136 907 206 48 13 chr21 44279078 44279300 -628270 - MLT1A1 LTR MaLR -2 363 172 427 107 0 0 chr21 44279749 44279805 -627765 + Alu SINE Alu 2 57 -252 1341 95 91 69 chr21 44279871 44280103 -627467 + AluSg/x SINE Alu 66 302 -10 3027 258 73 39 chr21 44280103 44281237 -626333 + L1M4 LINE L1 2294 3389 -2757 1882 106 0 91 chr21 44281237 44281578 -625992 - AluJb SINE Alu -2 310 1 3027 258 73 39 chr21 44281578 44281775 -625795 + L1M4 LINE L1 3389 3578 -2568 2024 121 0 3 chr21 44281775 44282065 -625505 - AluSx SINE Alu -23 289 1 3027 258 73 39 chr21 44282065 44282591 -624979 + L1M4 LINE L1 3578 4431 -1715 337 184 184 35 chr21 44282600 44282687 -624883 + AluJ/FLAM SINE Alu 3 102 -200 8207 122 4 0 chr21 44282687 44284775 -622795 + L1PA10 LINE L1 4085 6158 -10 321 134 104 0 chr21 44284799 44284866 -622704 - MLT1B LTR MaLR -193 197 124 884 214 38 0 chr21 44285618 44285828 -621742 + MLT1B LTR MaLR 22 239 -151 603 240 0 0 chr21 44287215 44287438 -620132 + (CA)n Simple_repeat Simple_repeat 1 223 0 239 198 86 12 chr21 44288428 44288509 -619061 - MLT1A1 LTR MaLR -426 198 112 261 320 0 0 chr21 44289486 44289564 -618006 - MIR SINE MIR -115 147 70 2766 238 87 53 chr21 44293486 44294492 -613078 + L1M4 LINE L1 3150 4200 -1946 2465 131 5 21 chr21 44294492 44294873 -612697 - THE1C LTR MaLR 0 375 1 2766 238 87 53 chr21 44294873 44295008 -612562 + L1M4 LINE L1 4200 4329 -1817 591 254 6 6 chr21 44295024 44295189 -612381 + L1M4 LINE L1 16 180 -6362 * 1282 219 27 45 chr21 44295184 44295558 -612012 + L1MB7 LINE L1 5818 6184 0 741 330 95 11 chr21 44295810 44296721 -610849 + L1M4 LINE L1 974 1978 -4668 631 264 93 64 chr21 44296721 44297088 -610482 + MLT1E LTR MaLR 7 384 -183 205 162 0 0 chr21 44297597 44297634 -609936 + (TGG)n Simple_repeat Simple_repeat 2 38 0 1465 272 39 21 chr21 44297634 44298130 -609440 + MLT1H LTR MaLR 2 549 0 588 200 24 31 chr21 44298130 44298389 -609181 + (ATGGTG)n Simple_repeat Simple_repeat 1 257 0 1287 105 0 3 chr21 44298389 44298971 -608599 + (TGG)n Simple_repeat Simple_repeat 1 761 0 258 210 65 0 chr21 44301184 44301246 -606324 + MIR SINE MIR 66 131 -77 1768 313 86 12 chr21 44301566 44302408 -605162 - HERV16 LTR ERVL -1902 3094 2385 1004 283 14 7 chr21 44302532 44302829 -604741 - HERV16 LTR ERVL -2786 2210 1912 310 301 21 0 chr21 44302894 44302987 -604583 - HERV16 LTR ERVL -3833 1821 1727 1000 337 100 10 chr21 44303002 44303732 -603838 - HERV16 LTR ERVL -3832 1164 369 277 302 81 7 chr21 44304031 44304180 -603390 - LTR16B LTR ERVL 0 464 305 233 265 0 0 chr21 44304445 44304513 -603057 + (CA)n Simple_repeat Simple_repeat 1 68 0 352 180 31 0 chr21 44304526 44304687 -602883 + (CA)n Simple_repeat Simple_repeat 2 167 0 24 32 0 0 chr21 44305335 44305366 -602204 + GC_rich Low_complexity Low_complexity 1 31 0 224 225 0 79 chr21 44305431 44305520 -602050 + C-rich Low_complexity Low_complexity 2 83 0 2372 54 6 19 chr21 44306668 44306981 -600589 + AluSx SINE Alu 1 309 -3 207 0 0 0 chr21 44307388 44307411 -600159 + (T)n Simple_repeat Simple_repeat 1 23 0 1122 136 40 15 chr21 44307572 44307801 -599769 - AluJb SINE Alu 0 312 88 198 0 0 0 chr21 44307809 44307831 -599739 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 8705 201 39 29 chr21 44307889 44311286 -596284 - L1MB3 LINE L1 -2 6181 2750 8904 145 101 15 chr21 44311294 44312594 -594976 + L1M4c LINE L1 407 1970 -4412 1729 172 0 28 chr21 44312594 44312906 -594664 + AluJb SINE Alu 1 304 0 8904 145 101 15 chr21 44312906 44313724 -593846 + L1M4c LINE L1 1970 2716 -3666 578 238 146 44 chr21 44313816 44314022 -593548 + MIR SINE MIR 8 234 -28 725 259 60 123 chr21 44314323 44314738 -592832 - L1M4 LINE L1 -1448 4698 4311 5209 117 22 13 chr21 44314738 44315508 -592062 + MER4E LTR ERV1 1 777 -2 725 259 60 123 chr21 44315508 44315540 -592030 - L1M4 LINE L1 -1835 4311 4279 251 293 0 12 chr21 44315540 44315622 -591948 + CT-rich Low_complexity Low_complexity 2 82 0 300 237 127 0 chr21 44315642 44315760 -591810 - L1M4 LINE L1 -1906 4240 4108 582 316 85 44 chr21 44315976 44316292 -591278 - L1M4 LINE L1 -2090 4056 3728 386 189 0 0 chr21 44316298 44316372 -591198 - MER52A LTR ERV1 0 1755 1682 * 3450 172 86 138 chr21 44316362 44317576 -589994 - MER52A LTR ERV1 -559 1196 46 297 177 16 0 chr21 44317731 44317793 -589777 - MER52A LTR ERV1 -1692 63 1 1079 158 0 0 chr21 44320867 44321038 -586532 - AluJ SINE Alu -4 308 138 328 100 0 0 chr21 44321039 44321089 -586481 + FLAM_A SINE Alu 16 65 -68 815 110 31 8 chr21 44321094 44321221 -586349 - AluJ SINE Alu -182 130 1 2448 69 0 3 chr21 44321643 44321948 -585622 + AluSc SINE Alu 1 304 -5 318 50 0 0 chr21 44324415 44324455 -583115 + (CA)n Simple_repeat Simple_repeat 2 41 0 560 260 16 0 chr21 44331004 44331329 -576241 + (TGGG)n Simple_repeat Simple_repeat 1 330 0 667 225 14 0 chr21 44331335 44331790 -575780 + (TGGA)n Simple_repeat Simple_repeat 1 461 0 215 229 21 0 chr21 44331792 44331840 -575730 + (TGGG)n Simple_repeat Simple_repeat 4 52 0 393 319 76 0 chr21 44335404 44335589 -571981 - L1 LINE L1 -2311 3835 3637 334 216 11 34 chr21 44336221 44336309 -571261 - MER67D LTR ERV1 -325 189 104 * 434 211 53 0 chr21 44336301 44336434 -571136 - MER67B LTR ERV1 -511 150 11 495 241 69 23 chr21 44337217 44337391 -570179 - MLT1D LTR MaLR -315 190 9 485 181 26 43 chr21 44341713 44341815 -565755 - MLT1C LTR MaLR -308 159 58 212 57 0 29 chr21 44341815 44341850 -565720 + (TTGGGG)n Simple_repeat Simple_repeat 1 34 0 485 181 26 43 chr21 44341850 44341863 -565707 - MLT1C LTR MaLR -409 58 46 828 166 0 0 chr21 44341881 44342232 -565338 + (TTAGGG)n Simple_repeat Simple_repeat 1 351 0 203 138 7 103 chr21 44343220 44343365 -564205 + C-rich Low_complexity Low_complexity 1 131 0 1731 166 20 0 chr21 44345390 44345686 -561884 - AluJb SINE Alu -8 304 3 1422 204 7 37 chr21 44348650 44348944 -558626 - AluJo SINE Alu -27 285 1 367 343 77 36 chr21 44349018 44349368 -558202 + L1M4 LINE L1 5045 5420 -747 3738 129 81 107 chr21 44349699 44350543 -557027 - LTR12 LTR ERV1 -3 823 2 755 178 10 25 chr21 44350778 44350882 -556688 + CT-rich Low_complexity Low_complexity 1 105 -1338 6529 125 44 13 chr21 44350882 44351859 -555711 + LTR13 LTR ERVK 1 1007 0 755 178 10 25 chr21 44351859 44352244 -555326 + CT-rich Low_complexity Low_complexity 105 1443 0 262 291 4 20 chr21 44353208 44353352 -554218 + C-rich Low_complexity Low_complexity 1 141 0 545 313 80 52 chr21 44354679 44355081 -552489 + L1MEd LINE L1 337 749 -5370 2233 104 0 22 chr21 44355154 44355470 -552100 + AluSg1 SINE Alu 1 309 0 1459 254 96 48 chr21 44355573 44355839 -551731 + L1MC4 LINE L1 7214 7466 -576 1585 184 32 23 chr21 44355839 44356148 -551422 + AluJo SINE Alu 1 312 0 1459 254 96 48 chr21 44356148 44356672 -550898 + L1MC4 LINE L1 7466 8042 0 981 216 15 0 chr21 44364025 44364224 -543346 - AluJ SINE Alu -1 311 110 1780 97 110 7 chr21 44364224 44364533 -543037 + THE1B LTR MaLR 1 341 -23 838 115 0 0 chr21 44364543 44364656 -542914 - AluJ SINE Alu -199 113 1 2459 64 0 0 chr21 44364666 44364964 -542606 - AluY SINE Alu -3 308 11 776 225 34 19 chr21 44365386 44365595 -541975 + MLT1B LTR MaLR 163 374 -16 1138 257 44 58 chr21 44366746 44367311 -540259 + MER74B LTR ERVL 66 622 0 213 302 0 0 chr21 44368472 44368535 -539035 + G-rich Low_complexity Low_complexity 1 63 0 309 205 57 49 chr21 44369999 44370088 -537482 + MER67C LTR ERV1 588 680 -30 2123 95 3 3 chr21 44370088 44370384 -537186 - AluSx SINE Alu -16 296 1 309 205 57 49 chr21 44370384 44370416 -537154 + MER67C LTR ERV1 680 710 0 3302 207 47 36 chr21 44370502 44371492 -536078 - L1M4 LINE L1 -677 5501 4498 1788 176 0 19 chr21 44371492 44371810 -535760 - AluJb SINE Alu 0 312 1 3302 207 47 36 chr21 44371810 44371860 -535710 - L1M4 LINE L1 -1680 4498 4450 2407 76 0 0 chr21 44372009 44372312 -535258 + AluSg SINE Alu 1 303 -7 813 271 18 14 chr21 44372439 44372716 -534854 + L1M4 LINE L1 3192 3469 -2677 1141 169 219 47 chr21 44372717 44373055 -534515 + LTR44 LTR ERV1 1 396 -123 230 239 15 45 chr21 44373056 44373123 -534447 + LTR44 LTR ERV1 341 405 -114 * 323 244 12 12 chr21 44373102 44373184 -534386 + LTR44 LTR ERV1 315 396 -123 894 166 47 0 chr21 44373193 44373362 -534208 + LTR44 LTR ERV1 343 519 0 436 250 56 7 chr21 44373364 44373508 -534062 + L1M4 LINE L1 3472 3622 -2524 * 454 128 43 0 chr21 44373489 44373583 -533987 + L1M1 LINE L1 3481 3578 -3987 2162 120 0 0 chr21 44373584 44373875 -533695 + AluSx SINE Alu 4 294 -18 4271 193 22 26 chr21 44373934 44375030 -532540 + L1M1 LINE L1 3561 4651 -2914 1183 152 0 62 chr21 44375030 44375254 -532316 + AluJo SINE Alu 1 210 -102 1428 203 24 16 chr21 44375271 44375650 -531920 + L1M4 LINE L1 4964 5345 -801 348 361 17 69 chr21 44376449 44376755 -530815 - L1ME3 LINE L1 -202 5960 5669 643 71 0 0 chr21 44378858 44378943 -528627 + AluY SINE Alu 214 298 -13 608 383 54 32 chr21 44379101 44379511 -528059 + L1M1 LINE L1 4755 5173 -2392 4584 224 104 3 chr21 44380198 44381338 -526232 + L1PA13 LINE L1 4 1258 -5529 1094 152 10 10 chr21 44381339 44381543 -526027 + L1PA13 LINE L1 1394 1597 -5190 2114 127 0 16 chr21 44381543 44381858 -525712 + AluSx SINE Alu 1 310 -2 15467 147 22 10 chr21 44381858 44385449 -522121 + L1PA13 LINE L1 2836 6476 -338 2306 88 7 0 chr21 44385449 44385754 -521816 + AluSq SINE Alu 1 307 -6 15467 147 22 10 chr21 44385754 44386097 -521473 + L1PA13 LINE L1 6476 6813 -1 2089 136 0 0 chr21 44386102 44386404 -521166 + AluSx SINE Alu 1 302 -10 1641 141 17 34 chr21 44386463 44386754 -520816 + AluJo SINE Alu 10 295 -17 772 151 56 0 chr21 44386761 44386887 -520683 + FLAM_C SINE Alu 1 133 0 581 288 167 0 chr21 44392727 44393033 -514537 - L1M4 LINE L1 -2349 3797 3441 643 132 70 0 chr21 44393076 44393190 -514380 + L1MC1 LINE L1 6212 6333 0 300 264 23 0 chr21 44393190 44393277 -514293 + L1M4 LINE L1 2899 2987 -3159 974 214 0 5 chr21 44393341 44393528 -514042 + AluJb SINE Alu 104 289 -23 340 167 39 0 chr21 44393542 44393620 -513950 + L1MC/D LINE L1 5153 5233 -913 979 151 0 7 chr21 44393641 44393793 -513777 - FRAM SINE Alu -24 152 2 989 158 0 6 chr21 44393795 44393966 -513604 - L1MC1 LINE L1 -129 6204 6035 1151 56 0 0 chr21 44393967 44394110 -513460 + AluY SINE Alu 154 296 -15 1333 102 80 0 chr21 44394110 44394335 -513235 + L1MC/D LINE L1 5325 5567 -766 2456 64 0 6 chr21 44394335 44394648 -512922 - AluY SINE Alu 0 311 1 1333 188 103 54 chr21 44394654 44394808 -512762 - L1M4 LINE L1 -819 5327 5182 1577 182 7 7 chr21 44394808 44395088 -512482 - AluJb SINE Alu -20 292 13 1333 188 103 54 chr21 44395088 44395379 -512191 - L1M4 LINE L1 -964 5182 4860 823 284 107 18 chr21 44395366 44395823 -511747 - L1M4 LINE L1 -3311 2835 2338 * 254 267 0 44 chr21 44400012 44400102 -507468 + (TATG)n Simple_repeat Simple_repeat 1 86 0 312 373 0 27 chr21 44400151 44400336 -507234 + (TG)n Simple_repeat Simple_repeat 1 180 0 294 326 5 43 chr21 44400385 44400569 -507001 + (TATG)n Simple_repeat Simple_repeat 4 180 0 324 371 6 11 chr21 44400601 44400779 -506791 + (TG)n Simple_repeat Simple_repeat 2 178 0 424 346 6 11 chr21 44400819 44400998 -506572 + (TG)n Simple_repeat Simple_repeat 1 178 0 375 350 6 11 chr21 44401061 44401238 -506332 + (TG)n Simple_repeat Simple_repeat 1 176 0 202 394 0 0 chr21 44401301 44401405 -506165 + (TG)n Simple_repeat Simple_repeat 1 104 0 309 383 0 0 chr21 44401420 44401574 -505996 + (TG)n Simple_repeat Simple_repeat 1 154 0 1436 157 78 41 chr21 44402796 44403112 -504458 + AluJo SINE Alu 1 312 0 328 353 67 17 chr21 44404087 44404206 -503364 + HAL1b LINE L1 73 197 -1151 234 235 0 0 chr21 44404228 44404279 -503291 + MLT1E LTR MaLR 87 137 -456 1124 230 16 12 chr21 44404415 44404667 -502903 + MLT1E LTR MaLR 341 593 0 619 282 145 23 chr21 44404667 44405105 -502465 + L1MC3 LINE L1 3261 3787 -2359 2294 82 13 3 chr21 44405105 44405411 -502159 + AluY SINE Alu 2 310 -1 619 282 145 23 chr21 44405411 44405546 -502024 + L1MC3 LINE L1 3787 3904 -2242 1388 155 4 4 chr21 44405554 44405780 -501790 + AluJo SINE Alu 74 299 -13 3139 205 68 13 chr21 44405783 44407618 -499952 + L1MC3 LINE L1 4321 6344 0 1608 200 169 103 chr21 44407666 44408471 -499099 + L1MC4 LINE L1 7043 7900 -142 2311 55 10 0 chr21 44409297 44409590 -497980 - AluY SINE Alu -14 297 2 2741 13 0 0 chr21 44409610 44409919 -497651 + AluYa5 SINE Alu 1 309 -2 1619 182 30 3 chr21 44410100 44410396 -497174 + AluJo SINE Alu 1 304 -8 242 319 106 0 chr21 44410513 44410673 -496897 - MIR SINE MIR -52 210 34 226 270 48 0 chr21 44411266 44411329 -496241 + L1ME LINE L1 2839 2904 -3242 306 298 53 60 chr21 44411415 44411514 -496056 + L1ME LINE L1 3003 3102 -3044 1948 136 0 13 chr21 44411514 44411823 -495747 + AluSx SINE Alu 7 311 -1 306 298 53 60 chr21 44411823 44411874 -495696 + L1ME LINE L1 3102 3152 -2994 316 171 6 0 chr21 44412072 44412140 -495430 + Alu SINE Alu 242 302 0 958 303 23 8 chr21 44412147 44412546 -495024 + L1ME LINE L1 3475 3893 -2253 546 241 15 7 chr21 44412555 44412713 -494857 + L1ME LINE L1 5610 5769 -393 2315 79 0 7 chr21 44417558 44417863 -489707 - AluSg1 SINE Alu -6 303 1 2150 91 0 10 chr21 44418628 44418926 -488644 - AluY SINE Alu -16 295 1 220 172 17 17 chr21 44419538 44419596 -487974 + (CAGGG)n Simple_repeat Simple_repeat 4 61 0 471 276 37 12 chr21 44424280 44424443 -483127 + L1MD3 LINE L1 7828 7994 -1 2169 89 16 7 chr21 44424466 44424770 -482800 + AluSx SINE Alu 5 311 -1 2069 105 17 0 chr21 44425844 44426139 -481431 + AluSx SINE Alu 1 300 -12 2227 97 0 3 chr21 44426223 44426522 -481048 - AluSc SINE Alu -11 298 1 1571 176 11 14 chr21 44428860 44429144 -478426 - AluJo SINE Alu -18 294 12 7983 57 21 3 chr21 44431002 44431991 -475579 + LTR13 LTR ERVK 1 1007 0 221 205 0 0 chr21 44432129 44432168 -475402 - MIR SINE MIR -56 152 114 689 161 15 51 chr21 44432327 44432464 -475106 + AluJo/FLAM SINE Alu 2 133 -169 1073 126 6 39 chr21 44432464 44432513 -475057 + AluSp SINE Alu 134 183 -130 8669 42 0 7 chr21 44432513 44433527 -474043 + LTR13 LTR ERVK 1 1007 0 1073 126 6 39 chr21 44433527 44433659 -473911 + AluSp SINE Alu 183 309 -4 246 130 0 0 chr21 44435667 44435713 -471857 + L1MD3 LINE L1 7934 7979 -16 183 104 62 0 chr21 44436304 44436352 -471218 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 283 116 0 83 chr21 44436580 44436701 -470869 + (TGGGGG)n Simple_repeat Simple_repeat 3 113 0 869 281 193 6 chr21 44438342 44438410 -469160 - L2 LINE L2 -852 2462 2408 1718 157 3 13 chr21 44438410 44438710 -468860 - AluJo SINE Alu -15 297 1 869 281 193 6 chr21 44438710 44439175 -468395 - L2 LINE L2 -906 2408 1829 503 270 109 62 chr21 44439176 44439450 -468120 + HAL1 LINE L1 2 288 -2219 553 222 85 20 chr21 44439816 44439969 -467601 + MLT1F LTR MaLR 285 447 -95 857 226 219 78 chr21 44440020 44440246 -467324 + HAL1 LINE L1 1338 1531 -976 3506 188 97 58 chr21 44440246 44441074 -466496 - MER21B LTR ERV1 -3 860 1 857 226 219 78 chr21 44441074 44441706 -465864 + HAL1 LINE L1 1531 2405 -102 316 223 239 0 chr21 44441708 44441838 -465732 - L2 LINE L2 -1858 1456 1296 574 286 65 29 chr21 44443130 44443172 -464398 - L1ME4a LINE L1 -245 5876 5837 1557 167 19 0 chr21 44443172 44443430 -464140 - AluJo SINE Alu -49 263 1 574 286 65 29 chr21 44443430 44443663 -463907 - L1ME4a LINE L1 -284 5837 5591 239 384 9 10 chr21 44443815 44443947 -463623 + MIR SINE MIR 3 133 -75 2177 113 0 3 chr21 44444598 44444900 -462670 - AluSx SINE Alu -11 301 1 1530 178 38 3 chr21 44444902 44445194 -462376 - AluJb SINE Alu -10 302 1 2343 80 3 0 chr21 44445315 44445616 -461954 + AluSq SINE Alu 1 302 -11 2176 120 0 0 chr21 44445923 44446223 -461347 + AluSx SINE Alu 1 300 -12 1805 281 220 32 chr21 44446274 44447905 -459665 - L2 LINE L2 0 3313 1323 252 262 143 24 chr21 44449035 44449203 -458367 - L1ME4a LINE L1 -1319 4827 4640 459 339 141 40 chr21 44449478 44450024 -457546 - L1ME4a LINE L1 -1781 4365 3765 271 288 17 17 chr21 44451414 44451526 -456044 - MER5A DNA MER1_type -49 129 18 807 129 15 23 chr21 44453165 44453297 -454273 - FLAM_A SINE Alu -2 131 1 710 257 57 0 chr21 44453538 44453713 -453857 + AluJo SINE Alu 113 297 -15 668 182 8 23 chr21 44454621 44454753 -452817 - FLAM_A SINE Alu -3 130 1 2017 100 104 0 chr21 44454871 44455150 -452420 - AluSx SINE Alu 0 312 5 849 127 0 56 chr21 44455315 44455457 -452113 + AluJo SINE Alu 1 134 -178 1606 263 120 23 chr21 44455985 44456693 -450877 + HAL1 LINE L1 775 1569 -938 1916 164 10 3 chr21 44456693 44456986 -450584 - AluJb SINE Alu -17 295 1 1606 263 120 23 chr21 44456986 44457067 -450503 + HAL1 LINE L1 1569 1641 -866 236 299 46 0 chr21 44457208 44457295 -450275 - MIR SINE MIR -9 253 163 251 193 0 0 chr21 44457393 44457450 -450120 - MIR SINE MIR -147 115 59 1387 250 93 21 chr21 44457840 44458363 -449207 + MLT1F1 LTR MaLR 1 567 0 368 299 190 47 chr21 44458370 44458581 -448989 + HAL1 LINE L1 2266 2506 -1 1596 132 101 35 chr21 44459376 44459664 -447906 - AluJo SINE Alu -5 307 1 1875 137 31 10 chr21 44459905 44460197 -447373 + AluSx SINE Alu 1 298 -14 696 102 29 22 chr21 44460212 44460349 -447221 + L1MB7 LINE L1 6047 6184 0 1874 160 14 10 chr21 44460358 44460646 -446924 + AluJb SINE Alu 1 289 -23 1042 141 153 51 chr21 44460898 44461153 -446417 + MSTA LTR MaLR 1 281 -147 297 188 128 59 chr21 44461138 44461376 -446194 + MSTA LTR MaLR 92 292 -136 * 282 224 0 15 chr21 44461370 44461437 -446133 + MSTB LTR MaLR 147 212 -214 * 1387 113 181 8 chr21 44461415 44461680 -445890 + MSTA LTR MaLR 118 428 0 327 305 163 29 chr21 44462466 44462997 -444573 - L2 LINE L2 0 3313 2607 2153 111 7 7 chr21 44464690 44464997 -442573 + AluSx SINE Alu 1 307 -5 258 258 41 98 chr21 44464998 44465138 -442432 + L1MC/D LINE L1 5602 5730 -2078 2461 66 0 20 chr21 44465138 44465439 -442131 + AluSg SINE Alu 3 297 -13 258 258 41 98 chr21 44465439 44465492 -442078 + L1MC/D LINE L1 5730 5784 -2024 317 227 53 0 chr21 44466103 44466178 -441392 + L2 LINE L2 3184 3262 -10 204 40 0 0 chr21 44466231 44466256 -441314 + (TG)n Simple_repeat Simple_repeat 2 26 0 2553 63 0 3 chr21 44466671 44466974 -440596 + AluY SINE Alu 1 302 -9 2074 131 0 36 chr21 44466985 44467128 -440442 + AluSx SINE Alu 1 129 -183 2379 88 24 0 chr21 44467128 44467424 -440146 + AluY SINE Alu 1 303 -8 2074 131 0 36 chr21 44467424 44467585 -439985 + AluSx SINE Alu 129 294 -18 871 185 26 0 chr21 44467779 44467930 -439640 - FAM SINE Alu -13 172 18 2292 117 0 3 chr21 44468950 44469257 -438313 + AluSc SINE Alu 1 306 -3 1254 149 4 52 chr21 44469300 44469548 -438022 + MER46A DNA MER2_type 1 236 0 1083 197 59 82 chr21 44469592 44469866 -437704 + L1 LINE L1 3412 3691 -2455 1951 185 0 0 chr21 44469866 44470174 -437396 + AluJo SINE Alu 4 311 -1 2628 42 7 3 chr21 44470183 44470490 -437080 + AluY SINE Alu 1 308 -3 1083 197 59 82 chr21 44470490 44470545 -437025 + L1 LINE L1 3699 3743 -2403 2418 96 0 3 chr21 44470545 44470857 -436713 + AluY SINE Alu 1 311 0 1171 220 3 49 chr21 44470859 44470999 -436571 + L1 LINE L1 4423 4568 -1578 2092 123 16 7 chr21 44470999 44471308 -436262 + AluSx SINE Alu 1 312 0 1171 220 3 49 chr21 44471308 44471534 -436036 + L1 LINE L1 4568 5120 -1026 1781 162 10 36 chr21 44475106 44475409 -432161 + AluJb SINE Alu 1 295 -17 2438 101 0 0 chr21 44475412 44475720 -431850 + AluSx SINE Alu 1 308 -4 530 281 199 32 chr21 44475815 44476156 -431414 - L2 LINE L2 -1 3312 2915 1938 112 36 14 chr21 44476259 44476555 -431015 + AluSx SINE Alu 1 302 0 1630 147 47 30 chr21 44476617 44476917 -430653 - AluJo SINE Alu -7 305 1 877 162 7 7 chr21 44478155 44478303 -429267 + FRAM SINE Alu 1 148 -18 807 211 0 12 chr21 44478662 44478823 -428747 - AluJo/FRAM SINE Alu -6 296 138 1340 145 14 36 chr21 44478824 44479045 -428525 - AluJb SINE Alu -10 302 87 2153 129 3 6 chr21 44479075 44479386 -428184 + AluSx SINE Alu 1 310 -2 2054 110 57 0 chr21 44480491 44480772 -426798 - AluSx SINE Alu -15 297 1 382 325 86 13 chr21 44481743 44482057 -425513 + L1ME4a LINE L1 5547 5883 -238 1972 155 3 13 chr21 44482151 44482460 -425110 + AluJb SINE Alu 1 306 -6 2161 112 3 29 chr21 44483467 44483781 -423789 + AluSp SINE Alu 1 306 -7 2484 74 3 0 chr21 44483940 44484237 -423333 - AluSp SINE Alu -14 299 2 1928 139 0 42 chr21 44484238 44484548 -423022 - AluSx SINE Alu -15 297 1 1257 157 0 58 chr21 44485452 44485675 -421895 + AluJo SINE Alu 87 296 -16 2446 69 3 0 chr21 44486178 44486469 -421101 - AluY SINE Alu -19 292 1 1718 85 9 9 chr21 44486570 44486793 -420777 + AluSg/x SINE Alu 70 292 -20 298 182 0 0 chr21 44487900 44487955 -419615 + AluJo SINE Alu 80 134 -168 2377 72 3 7 chr21 44488310 44488603 -418967 - AluY SINE Alu -19 292 1 804 204 0 0 chr21 44489037 44489179 -418391 + FLAM_C SINE Alu 1 142 -1 1963 144 10 0 chr21 44489216 44489515 -418055 + AluSx SINE Alu 1 302 -10 657 183 0 38 chr21 44489523 44489654 -417916 + FLAM_C SINE Alu 6 131 -12 24 0 0 0 chr21 44489655 44489679 -417891 + AT_rich Low_complexity Low_complexity 1 24 0 773 182 84 15 chr21 44489683 44489886 -417684 + L1M3 LINE L1 5601 5817 -363 2471 84 0 3 chr21 44490020 44490331 -417239 + AluY SINE Alu 1 310 -1 2345 99 0 0 chr21 44490419 44490722 -416848 - AluY SINE Alu -8 303 1 224 308 51 0 chr21 44494016 44494133 -413437 + C-rich Low_complexity Low_complexity 2 124 0 225 0 0 0 chr21 44494680 44494705 -412865 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1916 104 17 35 chr21 44494709 44494998 -412572 - AluSx SINE Alu -28 284 1 377 160 9 75 chr21 44495067 44495173 -412397 - L1MC5 LINE L1 -27 7934 7836 2169 107 0 64 chr21 44495206 44495534 -412036 + AluSq SINE Alu 1 307 -6 2458 83 3 10 chr21 44495893 44496205 -411365 + AluSg SINE Alu 1 310 0 1757 159 0 22 chr21 44496253 44496530 -411040 + AluJb SINE Alu 21 291 -21 242 246 0 0 chr21 44496535 44496596 -410974 + L1MC/D LINE L1 5706 5766 -2042 1468 114 63 82 chr21 44496806 44496939 -410631 - MER65A LTR ERV1 -3 442 308 2357 93 0 26 chr21 44496939 44497251 -410319 - AluSx SINE Alu -8 304 1 1468 114 63 82 chr21 44497251 44497434 -410136 - MER65A LTR ERV1 -137 308 132 270 119 0 0 chr21 44497437 44497479 -410091 - MER65A LTR ERV1 -271 174 133 276 116 0 0 chr21 44497485 44497528 -410042 - MER65B LTR ERV1 -357 174 132 744 169 40 73 chr21 44497531 44497708 -409862 - MER65A LTR ERV1 -271 174 4 2313 92 0 7 chr21 44497708 44498001 -409569 - AluSg SINE Alu -19 291 1 2354 82 0 20 chr21 44498129 44498261 -409309 + AluSq SINE Alu 6 139 -174 2131 74 106 0 chr21 44498261 44498544 -409026 + AluSp SINE Alu 1 313 0 2354 82 0 20 chr21 44498544 44498714 -408856 + AluSq SINE Alu 139 302 -11 1372 220 53 125 chr21 44499329 44500071 -407499 - LTR8A LTR ERV1 0 727 62 255 188 42 0 chr21 44500055 44500103 -407467 - MER87 LTR ERV1 -396 145 96 * 255 188 42 0 chr21 44500129 44500177 -407393 - MER87 LTR ERV1 -396 145 96 244 318 0 0 chr21 44500203 44500266 -407304 - MER87 LTR ERV1 -396 145 83 261 302 0 0 chr21 44500277 44500340 -407230 - MER87 LTR ERV1 -396 145 83 255 188 42 0 chr21 44500351 44500399 -407171 - MER87 LTR ERV1 -396 145 96 240 208 42 0 chr21 44500425 44500473 -407097 - MER87 LTR ERV1 -396 145 96 269 271 0 0 chr21 44500499 44500558 -407012 - MER87 LTR ERV1 -396 145 87 261 302 0 0 chr21 44500573 44500636 -406934 - MER87 LTR ERV1 -396 145 83 255 188 42 0 chr21 44500647 44500695 -406875 - MER87 LTR ERV1 -396 145 96 255 188 42 0 chr21 44500721 44500769 -406801 - MER87 LTR ERV1 -396 145 96 261 302 0 0 chr21 44500795 44500858 -406712 - MER87 LTR ERV1 -396 145 83 244 318 0 0 chr21 44500869 44500932 -406638 - MER87 LTR ERV1 -396 145 83 240 208 42 0 chr21 44500943 44500991 -406579 - MER87 LTR ERV1 -396 145 96 244 318 0 0 chr21 44501017 44501080 -406490 - MER87 LTR ERV1 -396 145 83 240 208 42 0 chr21 44501091 44501139 -406431 - MER87 LTR ERV1 -396 145 96 244 318 0 0 chr21 44501165 44501228 -406342 - MER87 LTR ERV1 -396 145 83 251 288 0 0 chr21 44501239 44501298 -406272 - MER87 LTR ERV1 -396 145 87 240 208 42 0 chr21 44501313 44501361 -406209 - MER87 LTR ERV1 -396 145 96 244 318 0 0 chr21 44501387 44501450 -406120 - MER87 LTR ERV1 -396 145 83 244 318 0 0 chr21 44501461 44501524 -406046 - MER87 LTR ERV1 -396 145 83 244 318 0 0 chr21 44501535 44501598 -405972 - MER87 LTR ERV1 -396 145 83 279 286 0 0 chr21 44501609 44501672 -405898 - MER87 LTR ERV1 -396 145 83 261 302 0 0 chr21 44501683 44501746 -405824 - MER87 LTR ERV1 -396 145 83 244 318 0 0 chr21 44501757 44501820 -405750 - MER87 LTR ERV1 -396 145 83 255 188 42 0 chr21 44501831 44501879 -405691 - MER87 LTR ERV1 -396 145 96 255 188 42 0 chr21 44501905 44501953 -405617 - MER87 LTR ERV1 -396 145 96 244 318 0 0 chr21 44501979 44502042 -405528 - MER87 LTR ERV1 -396 145 83 255 188 42 0 chr21 44502053 44502101 -405469 - MER87 LTR ERV1 -396 145 96 244 318 0 0 chr21 44502127 44502190 -405380 - MER87 LTR ERV1 -396 145 83 225 94 0 0 chr21 44502977 44503009 -404561 + (TCC)n Simple_repeat Simple_repeat 1 32 0 2456 70 3 7 chr21 44504210 44504511 -403059 + AluSp SINE Alu 1 300 -13 1934 65 0 0 chr21 44504514 44504745 -402825 + AluSq SINE Alu 1 231 -82 180 154 0 62 chr21 44504747 44504812 -402758 + C-rich Low_complexity Low_complexity 2 62 0 2407 41 0 3 chr21 44505932 44506226 -401344 - AluY SINE Alu -18 293 1 1880 136 10 14 chr21 44506228 44506523 -401047 - AluSx SINE Alu -18 294 1 198 103 0 0 chr21 44506533 44506562 -401008 + (T)n Simple_repeat Simple_repeat 1 29 0 1241 159 0 5 chr21 44506564 44506765 -400805 - AluSx SINE Alu -112 200 1 315 242 97 16 chr21 44507257 44507381 -400189 + MER115 DNA AcHobo 112 245 -448 2323 70 0 22 chr21 44507646 44507961 -399609 + AluY SINE Alu 1 308 -3 1778 159 0 17 chr21 44508631 44508932 -398638 - AluJo SINE Alu -4 308 13 207 0 0 0 chr21 44509569 44509592 -397978 + (TGG)n Simple_repeat Simple_repeat 1 23 0 734 280 58 14 chr21 44510500 44510515 -397055 + L1MB2 LINE L1 5152 5165 -999 1537 137 6 132 chr21 44510515 44510857 -396713 + AluJo SINE Alu 2 300 -2 734 280 58 14 chr21 44510857 44511067 -396503 + L1MB2 LINE L1 5165 5364 -800 1385 157 66 46 chr21 44511067 44511175 -396395 + AluJo SINE Alu 1 105 -207 261 0 0 0 chr21 44511175 44511204 -396366 + (CA)n Simple_repeat Simple_repeat 2 30 0 342 0 0 0 chr21 44511206 44511244 -396326 + (TA)n Simple_repeat Simple_repeat 2 39 0 2190 66 0 0 chr21 44511244 44511518 -396052 - AluY SINE Alu -7 304 31 2331 81 0 13 chr21 44511518 44511827 -395743 - AluY SINE Alu -6 305 1 1385 157 66 46 chr21 44511827 44512018 -395552 + AluJo SINE Alu 104 311 -1 734 280 58 14 chr21 44512018 44512214 -395356 + L1MB2 LINE L1 5364 5591 -573 227 246 72 0 chr21 44512234 44512303 -395267 + MLT1D LTR MaLR 55 128 -377 1050 219 86 19 chr21 44512304 44512560 -395010 + L1MB2 LINE L1 5732 6004 -167 849 233 84 19 chr21 44512561 44512823 -394747 + L1MB2 LINE L1 5888 6166 -5 1868 171 0 0 chr21 44512823 44513122 -394448 - AluJb SINE Alu -8 304 6 2276 66 7 10 chr21 44513155 44513456 -394114 + AluY SINE Alu 1 300 -11 634 186 0 9 chr21 44513472 44513585 -393985 + FLAM_A SINE Alu 22 133 -9 373 175 15 2 chr21 44513586 44513661 -393909 + MLT1D LTR MaLR 115 187 -324 2054 88 28 3 chr21 44513724 44514007 -393563 + AluSc SINE Alu 1 290 -19 1845 159 3 13 chr21 44514070 44514385 -393185 - AluJb SINE Alu 0 312 1 2202 112 0 0 chr21 44514390 44514693 -392877 - AluSx SINE Alu -9 303 1 762 119 0 0 chr21 44514702 44514803 -392767 - FLAM_C SINE Alu -36 107 7 805 219 21 0 chr21 44515303 44515490 -392080 + L1ME1 LINE L1 5393 5583 -583 1121 141 6 0 chr21 44515490 44515660 -391910 - AluSg/x SINE Alu -11 301 131 2177 90 0 0 chr21 44515680 44515969 -391601 + AluSg SINE Alu 3 291 -19 575 244 0 0 chr21 44515980 44516103 -391467 + L1ME1 LINE L1 5617 5739 -425 370 86 0 23 chr21 44516103 44516170 -391400 + MSTC LTR MaLR 22 84 -315 2035 114 37 43 chr21 44516180 44516530 -391040 + MSTC LTR MaLR 38 385 -43 1123 86 0 0 chr21 44516534 44516674 -390896 + AluSq/x SINE Alu 1 140 -172 2221 90 3 3 chr21 44516676 44516976 -390594 + AluSq SINE Alu 1 300 -13 304 65 109 0 chr21 44516976 44517022 -390548 + MSTC LTR MaLR 378 428 0 1051 210 61 63 chr21 44517022 44517212 -390358 + L1ME1 LINE L1 5745 5936 -230 2005 92 3 11 chr21 44517212 44517521 -390049 + AluSg1 SINE Alu 1 307 0 1051 210 61 63 chr21 44517521 44517691 -389879 + L1ME1 LINE L1 5936 6105 -61 2169 102 6 6 chr21 44517692 44518005 -389565 + AluSq SINE Alu 1 313 0 1765 163 0 3 chr21 44518024 44518307 -389263 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr21 44518317 44518338 -389232 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1876 135 7 10 chr21 44518364 44518667 -388903 - AluSx SINE Alu -10 302 1 444 116 0 0 chr21 44519127 44519213 -388357 + (CCAA)n Simple_repeat Simple_repeat 3 88 0 990 140 0 0 chr21 44519213 44519408 -388162 + (CCCA)n Simple_repeat Simple_repeat 1 374 0 990 140 0 0 chr21 44519408 44519587 -387983 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 1860 90 0 0 chr21 44519818 44520063 -387507 - AluSq SINE Alu -15 298 54 418 93 0 0 chr21 44520112 44520166 -387404 - AluSq SINE Alu -254 55 2 604 152 0 0 chr21 44520169 44520268 -387302 - L1ME LINE L1 -682 5484 5386 1287 239 85 13 chr21 44520562 44520880 -386690 - MER58B DNA MER1_type 0 341 1 237 262 0 0 chr21 44521473 44521534 -386036 + LTR67 LTR ERVL 489 549 -8 1669 103 0 0 chr21 44521651 44521875 -385695 - AluSx SINE Alu -88 224 1 808 176 12 24 chr21 44523503 44523668 -383902 + AluJb SINE Alu 138 300 -12 1959 152 0 0 chr21 44523671 44523967 -383603 + AluSx SINE Alu 1 296 -16 328 293 184 0 chr21 44524377 44524524 -383046 + MIR SINE MIR 23 196 -66 804 159 0 8 chr21 44526986 44527112 -380458 + AluJo/FLAM SINE Alu 9 133 -179 2141 93 10 6 chr21 44527114 44527426 -380144 + AluSq SINE Alu 1 313 0 392 109 0 0 chr21 44527548 44527603 -379967 + LTR62 LTR ERVK 1 55 -664 2101 89 10 10 chr21 44527607 44527899 -379671 - AluSq SINE Alu -21 292 1 635 112 0 28 chr21 44527928 44528035 -379535 + AluSp/q SINE Alu 205 308 -5 2224 137 205 0 chr21 44528036 44528490 -379080 + LTR62 LTR ERVK 66 612 -107 560 207 44 0 chr21 44528531 44528666 -378904 - L1MC3 LINE L1 0 7785 7645 1140 135 0 0 chr21 44528676 44528839 -378731 - AluSg/x SINE Alu -22 290 128 1763 210 95 0 chr21 44528857 44529290 -378280 - L1MC3 LINE L1 -125 7660 7187 285 297 18 27 chr21 44529292 44529403 -378167 - MLT1F1 LTR MaLR -445 122 13 * 372 97 0 0 chr21 44529399 44529461 -378109 - Alu SINE Alu 0 302 241 1789 152 13 7 chr21 44529504 44529806 -377764 + AluJb SINE Alu 1 304 -8 540 110 24 0 chr21 44530206 44530288 -377282 + AluSg/x SINE Alu 212 295 -14 268 293 48 27 chr21 44530903 44531050 -376520 - MER4E LTR ERV1 -152 627 478 388 169 49 49 chr21 44532030 44532172 -375398 + (CGGGG)n Simple_repeat Simple_repeat 2 143 0 23 33 0 0 chr21 44532282 44532312 -375258 + GC_rich Low_complexity Low_complexity 1 30 0 2116 99 3 0 chr21 44534229 44534523 -373047 + AluSx SINE Alu 1 295 -17 2437 62 3 0 chr21 44534548 44534856 -372714 - AluY SINE Alu -2 309 1 943 205 0 0 chr21 44534896 44535062 -372508 - FRAM SINE Alu 0 166 1 812 184 13 0 chr21 44535752 44535904 -371666 - AluSg/x SINE Alu -2 310 157 2135 114 3 0 chr21 44535960 44536258 -371312 - AluSq SINE Alu -14 299 1 1989 125 0 7 chr21 44536274 44536571 -370999 - AluSg SINE Alu -15 295 1 1659 189 0 3 chr21 44537615 44537916 -369654 - AluJb SINE Alu -12 300 1 285 89 0 0 chr21 44538515 44538560 -369010 + (TG)n Simple_repeat Simple_repeat 1 45 0 827 205 12 0 chr21 44538656 44538822 -368748 - AluJb SINE Alu -12 300 133 1303 173 197 8 chr21 44539031 44539285 -368285 + AluJo SINE Alu 1 302 0 2167 104 0 0 chr21 44539375 44539672 -367898 + AluSq SINE Alu 1 297 -16 624 187 7 0 chr21 44539806 44539945 -367625 - Looper DNA T2_type -8 1550 1411 885 221 207 5 chr21 44539958 44540325 -367245 - Looper DNA T2_type -598 960 520 1690 148 7 21 chr21 44540326 44540616 -366954 + AluJo SINE Alu 3 288 -24 2286 98 3 0 chr21 44540649 44540955 -366615 + AluY SINE Alu 1 307 -4 1128 83 51 0 chr21 44540955 44541111 -366459 + AluSg/x SINE Alu 132 295 -15 861 81 0 0 chr21 44541116 44541227 -366343 + AluSq/x SINE Alu 1 111 -201 877 106 0 0 chr21 44541227 44541350 -366220 + AluSc SINE Alu 173 295 -14 2361 71 3 0 chr21 44541422 44541719 -365851 + AluY SINE Alu 1 298 -13 348 77 10 5 chr21 44542911 44543105 -364465 + AluSg SINE Alu 1 292 -8 1809 125 49 30 chr21 44543170 44543475 -364095 - AluSx SINE Alu -1 311 1 2152 82 11 0 chr21 44543481 44543763 -363807 - AluSq SINE Alu -17 296 12 391 261 0 0 chr21 44543872 44543960 -363610 - AluJb SINE Alu -2 300 213 3237 250 47 62 chr21 44543960 44544480 -363090 - L1MC3 LINE L1 -833 6952 6426 258 56 0 0 chr21 44544480 44544516 -363054 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1670 110 83 0 chr21 44544520 44544774 -362796 - AluSx SINE Alu -37 275 1 3237 250 47 62 chr21 44544774 44545081 -362489 - L1MC3 LINE L1 -1362 6423 6113 2232 75 3 7 chr21 44545081 44545375 -362195 - AluSp SINE Alu -14 299 7 1777 148 3 17 chr21 44545381 44545671 -361899 - AluJo SINE Alu -22 290 5 3237 250 47 62 chr21 44545671 44546092 -361478 - L1MC3 LINE L1 -1677 6108 5710 1902 108 30 43 chr21 44546100 44546270 -361300 - AluSx SINE Alu -11 301 135 1991 100 7 10 chr21 44546270 44546579 -360991 - AluSx SINE Alu 0 312 1 1902 108 30 43 chr21 44546579 44546713 -360857 - AluSx SINE Alu -177 135 1 3053 100 14 11 chr21 44546877 44547316 -360254 - MLT2A2 LTR ERVL -13 440 1 555 296 108 45 chr21 44547344 44547484 -360086 - L1MEd LINE L1 -4863 1256 1126 2559 90 16 27 chr21 44547484 44547851 -359719 - THE1B LTR MaLR -1 363 1 555 296 108 45 chr21 44547851 44548109 -359461 - L1MEd LINE L1 -4993 1126 833 1552 108 0 18 chr21 44548172 44548395 -359175 - AluSg/x SINE Alu -17 293 75 2015 119 3 0 chr21 44548395 44548680 -358890 - AluSx SINE Alu -26 286 1 35 0 0 0 chr21 44548970 44549005 -358565 + AT_rich Low_complexity Low_complexity 1 35 0 809 172 0 8 chr21 44549029 44549163 -358407 - AluJo SINE Alu -178 134 2 1229 210 12 0 chr21 44549175 44549427 -358143 - AluJo SINE Alu -8 304 50 1040 174 0 21 chr21 44549434 44549606 -357964 - AluSg/x SINE Alu -7 303 134 1965 144 0 0 chr21 44549606 44549904 -357666 - AluSx SINE Alu -14 298 1 1040 174 0 21 chr21 44549904 44549921 -357649 - AluSg/x SINE Alu -176 134 118 466 163 0 12 chr21 44549921 44550007 -357563 - L1P5 LINE L1 -583 5568 5484 * 5344 209 40 7 chr21 44549980 44550025 -357545 - L1 LINE L1 -1617 4529 4487 2104 100 33 7 chr21 44550025 44550326 -357244 - AluSc SINE Alu 0 309 1 5344 209 40 7 chr21 44550326 44551550 -356020 - L1 LINE L1 -1659 4487 3218 2257 84 0 31 chr21 44551550 44551871 -355699 - AluY SINE Alu 0 311 1 2244 98 3 0 chr21 44552709 44553014 -354556 - AluSx SINE Alu -6 306 1 1610 283 73 0 chr21 44553075 44553570 -354000 - L1MB5 LINE L1 0 6174 5644 1936 127 0 36 chr21 44556115 44556423 -351147 - AluJo SINE Alu -15 297 1 501 185 0 0 chr21 44557439 44557520 -350050 + AluSg SINE Alu 1 81 -229 1173 104 18 0 chr21 44557520 44557714 -349856 + AluSq SINE Alu 127 323 0 651 268 148 0 chr21 44560102 44560345 -347225 - MLT1E2 LTR MaLR -1 625 347 333 0 0 0 chr21 44561213 44561250 -346320 + (TG)n Simple_repeat Simple_repeat 1 37 0 233 283 40 0 chr21 44561991 44562090 -345480 + MER3 DNA MER1_type 6 108 -101 180 0 0 0 chr21 44564941 44564961 -342609 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1613 145 57 8 chr21 44564965 44565227 -342343 - AluSx SINE Alu -37 275 1 214 378 70 25 chr21 44565784 44565985 -341585 - L3 LINE CR1 -759 818 609 2154 94 0 42 chr21 44566099 44566290 -341280 - AluSx SINE Alu 0 324 151 2350 82 0 25 chr21 44566290 44566606 -340964 - AluY SINE Alu -3 308 1 2154 94 0 42 chr21 44566606 44566751 -340819 - AluSx SINE Alu -173 151 1 962 282 102 55 chr21 44566832 44566979 -340591 - L1MEc LINE L1 -3615 2465 2326 2169 111 3 0 chr21 44566979 44567285 -340285 - AluSg SINE Alu -3 307 1 962 282 102 55 chr21 44567285 44567353 -340217 - L1MEc LINE L1 -3754 2326 2263 2015 139 26 0 chr21 44567353 44567655 -339915 - AluJb SINE Alu -2 310 1 962 282 102 55 chr21 44567655 44567712 -339858 - L1MEc LINE L1 -3817 2263 2210 2250 66 13 16 chr21 44567712 44568016 -339554 - AluY SINE Alu -3 308 6 2397 71 0 0 chr21 44568019 44568316 -339254 - AluY SINE Alu -14 297 1 962 282 102 55 chr21 44568316 44568607 -338963 - L1MEc LINE L1 -3871 2209 1933 1975 122 20 20 chr21 44568607 44568911 -338659 + AluSx SINE Alu 1 304 -8 962 282 102 55 chr21 44568911 44569352 -338218 - L1MEc LINE L1 -4147 1933 1426 761 276 36 43 chr21 44569353 44569774 -337796 - L1MEc LINE L1 -5323 747 330 437 250 71 12 chr21 44569822 44569990 -337580 - L1MEc LINE L1 -5854 216 39 799 109 31 16 chr21 44570157 44570381 -337189 + AluJo SINE Alu 1 298 -14 2268 81 7 0 chr21 44574809 44575105 -332465 - AluSx SINE Alu -14 298 1 1601 140 67 21 chr21 44575389 44575674 -331896 + AluJb SINE Alu 1 298 -14 2221 67 0 11 chr21 44575674 44575958 -331612 + AluY SINE Alu 13 293 -18 835 174 0 0 chr21 44576739 44576871 -330699 - FLAM_C SINE Alu 0 133 2 1155 185 27 14 chr21 44578123 44578252 -329318 + AluJo SINE Alu 1 136 -176 2282 88 0 31 chr21 44578252 44578572 -328998 + AluY SINE Alu 1 310 -1 1155 185 27 14 chr21 44578572 44578664 -328906 + AluJo SINE Alu 136 225 -87 1473 158 102 3 chr21 44578703 44578987 -328583 - AluJb SINE Alu 0 312 1 332 183 0 57 chr21 44579275 44579530 -328040 + (CA)n Simple_repeat Simple_repeat 1 240 0 316 216 3 54 chr21 44579563 44579924 -327646 + (CA)n Simple_repeat Simple_repeat 1 342 0 1738 172 28 0 chr21 44580521 44580812 -326758 - AluJo SINE Alu -13 299 1 2221 78 17 0 chr21 44580928 44581223 -326347 - AluSc SINE Alu -9 300 1 2333 77 7 0 chr21 44581228 44581526 -326044 - AluSg SINE Alu -10 300 1 2337 92 3 0 chr21 44582066 44582370 -325200 + AluSp SINE Alu 1 305 -8 23 33 0 0 chr21 44582791 44582821 -324749 + AT_rich Low_complexity Low_complexity 1 30 0 1212 211 70 7 chr21 44585090 44585375 -322195 + AluJo SINE Alu 10 312 0 263 290 148 0 chr21 44585381 44585543 -322027 - L1MB5 LINE L1 -164 6010 5825 337 263 26 0 chr21 44585545 44585621 -321949 - L1ME LINE L1 -4040 2606 2529 1245 219 65 104 chr21 44585644 44586184 -321386 - Tigger7 DNA MER2_type 0 2487 32 302 353 77 19 chr21 44586203 44586359 -321211 - L1ME LINE L1 -4309 2516 2352 991 264 88 30 chr21 44586454 44586982 -320588 - L1ME LINE L1 -4574 2251 1594 189 74 0 0 chr21 44586982 44587009 -320561 + (TTA)n Simple_repeat Simple_repeat 2 28 0 991 264 88 30 chr21 44587009 44587309 -320261 - L1ME LINE L1 -5231 1594 1313 * 1220 292 122 23 chr21 44587290 44587652 -319918 - L1ME LINE L1 -5725 817 492 2429 65 16 0 chr21 44587652 44587958 -319612 - AluY SINE Alu 0 311 1 1220 292 122 23 chr21 44587958 44588327 -319243 - L1ME LINE L1 -6050 492 14 1889 126 7 39 chr21 44588381 44588691 -318879 + AluSx SINE Alu 1 300 -12 441 0 0 0 chr21 44588695 44588744 -318826 + (TG)n Simple_repeat Simple_repeat 2 50 0 340 236 45 0 chr21 44589361 44589450 -318120 - L1MB3 LINE L1 -9 6174 6082 554 170 34 20 chr21 44592446 44592573 -314997 - L1MB3 LINE L1 -60 6123 5992 1922 147 0 3 chr21 44592573 44592865 -314705 + AluJo SINE Alu 3 293 -19 554 170 34 20 chr21 44592865 44592884 -314686 - L1MB3 LINE L1 -191 5992 5975 2487 60 0 0 chr21 44595427 44595728 -311842 + AluY SINE Alu 1 301 -10 445 192 0 0 chr21 44597299 44597372 -310198 + AluJ/FLAM SINE Alu 1 73 -239 1187 160 75 0 chr21 44597627 44597827 -309743 + AluJo SINE Alu 85 299 -13 224 331 89 0 chr21 44597840 44597964 -309606 - L2 LINE L2 -1054 2260 2126 320 276 41 73 chr21 44599587 44599710 -307860 - L1M4 LINE L1 -2913 3233 3115 2224 101 3 3 chr21 44599712 44600019 -307551 - AluSx SINE Alu -5 307 1 871 265 33 98 chr21 44603699 44604088 -303482 - MLT1A1 LTR MaLR -1 364 1 207 0 0 0 chr21 44604098 44604121 -303449 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2048 115 4 0 chr21 44604121 44604400 -303170 - AluSx SINE Alu -32 280 1 22 0 0 0 chr21 44605907 44605929 -301641 + AT_rich Low_complexity Low_complexity 1 22 0 * 779 281 125 15 chr21 44605908 44606300 -301270 - L1MD1 LINE L1 -14 6228 5794 2424 69 0 0 chr21 44606305 44606611 -300959 - AluY SINE Alu 0 311 6 2388 81 0 3 chr21 44608007 44608317 -299253 - AluSx SINE Alu -3 309 1 184 225 50 0 chr21 44608514 44608554 -299016 - L2 LINE L2 -5 3267 3226 2170 102 6 10 chr21 44609335 44609649 -297921 - AluSq SINE Alu 0 313 1 21 71 0 0 chr21 44609746 44609788 -297782 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr21 44610432 44610470 -297100 + AT_rich Low_complexity Low_complexity 1 38 0 1684 142 55 7 chr21 44612167 44612442 -295128 + AluJb SINE Alu 5 292 -20 1344 204 31 17 chr21 44612452 44612741 -294829 + AluJb SINE Alu 1 293 -19 2087 89 14 3 chr21 44612913 44613205 -294365 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr21 44613290 44613318 -294252 + AT_rich Low_complexity Low_complexity 1 28 0 2578 266 100 37 chr21 44613805 44614832 -292738 - L1M4 LINE L1 -1662 4484 3346 2381 62 0 7 chr21 44614832 44615140 -292430 - AluY SINE Alu -5 306 1 2578 266 100 37 chr21 44615140 44615497 -292073 - L1M4 LINE L1 -2800 3346 3013 416 288 144 20 chr21 44615498 44615644 -291926 - L1ME1 LINE L1 0 6166 6003 1884 231 59 49 chr21 44615697 44616217 -291353 - L1ME1 LINE L1 -300 5866 5353 2097 93 13 17 chr21 44616217 44616517 -291053 - AluSx SINE Alu -9 303 5 1884 231 59 49 chr21 44616517 44616681 -290889 - L1ME1 LINE L1 -813 5353 5163 2013 128 10 0 chr21 44616681 44616985 -290585 - AluSx SINE Alu -5 307 1 1884 231 59 49 chr21 44616985 44617000 -290570 - L1ME1 LINE L1 -1003 5163 5150 1832 144 27 0 chr21 44617092 44617391 -290179 - AluSx SINE Alu -5 307 1 292 309 103 26 chr21 44617983 44618177 -289393 + MIR SINE MIR 18 226 -36 2389 90 0 0 chr21 44621479 44621789 -285781 - AluSx SINE Alu -2 310 1 189 0 0 0 chr21 44621916 44621937 -285633 + (TCC)n Simple_repeat Simple_repeat 3 23 0 183 42 0 0 chr21 44622022 44622046 -285524 + (TCC)n Simple_repeat Simple_repeat 3 26 0 2384 73 0 25 chr21 44622863 44623180 -284390 - AluSg1 SINE Alu 0 309 1 2257 94 3 3 chr21 44624682 44624989 -282581 - AluSg SINE Alu -3 307 1 1732 148 3 11 chr21 44625129 44625412 -282158 + AluJb SINE Alu 14 294 -18 305 179 18 0 chr21 44626071 44626127 -281443 - L1MC4 LINE L1 -302 7740 7684 237 293 84 24 chr21 44626437 44626604 -280966 - L1MC4 LINE L1 -748 7294 7118 864 217 0 0 chr21 44627243 44627404 -280166 - AluJb SINE Alu -17 295 135 358 279 74 26 chr21 44627727 44627956 -279614 - HAL1 LINE L1 -1236 1271 1032 408 216 199 39 chr21 44630251 44630432 -277138 + MER6B DNA MER2_type 1 210 0 836 121 9 0 chr21 44630463 44630579 -276991 + FLAM_C SINE Alu 1 117 -16 1748 152 45 0 chr21 44630697 44630987 -276583 - AluJb SINE Alu -9 303 1 743 134 35 6 chr21 44631192 44631363 -276207 + GA-rich Low_complexity Low_complexity 2 177 0 393 261 15 15 chr21 44632179 44632309 -275261 + (CCCCG)n Simple_repeat Simple_repeat 3 132 0 273 57 0 0 chr21 44633559 44633594 -273976 + (T)n Simple_repeat Simple_repeat 1 35 0 1715 100 0 0 chr21 44633598 44633829 -273741 - AluSg1 SINE Alu -78 231 1 764 273 173 7 chr21 44634787 44635065 -272505 - MLT1A2 LTR MaLR -4 370 47 408 259 134 45 chr21 44637012 44637213 -270357 - L1M4 LINE L1 -2426 3720 3502 1099 276 22 44 chr21 44639794 44640132 -267438 - L1M4 LINE L1 -1312 4834 4505 1917 126 14 0 chr21 44640132 44640417 -267153 - AluSx SINE Alu -23 289 1 1099 276 22 44 chr21 44640417 44640483 -267087 - L1M4 LINE L1 -1641 4505 4439 418 186 0 35 chr21 44640484 44640570 -267000 - AluS SINE Alu -1 309 227 2121 111 0 3 chr21 44640596 44640893 -266677 + AluSq SINE Alu 1 296 -17 2110 100 3 29 chr21 44641264 44641574 -265996 - AluSg SINE Alu -8 302 1 2219 103 3 6 chr21 44642711 44643022 -264548 - AluSx SINE Alu -2 310 1 2256 71 0 0 chr21 44643032 44643338 -264232 - AluY SINE Alu 0 306 1 22 0 0 0 chr21 44643965 44643987 -263583 + GC_rich Low_complexity Low_complexity 1 22 0 2184 100 10 3 chr21 44646166 44646465 -261105 - AluSg SINE Alu -9 301 1 33 25 0 0 chr21 44646570 44646610 -260960 + AT_rich Low_complexity Low_complexity 1 40 0 788 148 7 22 chr21 44646824 44646959 -260611 - AluJb SINE Alu -6 306 174 1116 202 53 9 chr21 44646979 44647207 -260363 + MER2 DNA MER2_type 108 345 0 204 158 26 0 chr21 44649158 44649196 -258374 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 815 211 6 0 chr21 44650706 44650877 -256693 - AluJo SINE Alu -4 308 137 2132 99 3 3 chr21 44653487 44653780 -253790 - AluSx SINE Alu -19 293 1 1573 167 7 7 chr21 44653876 44654152 -253418 - AluJb SINE Alu -16 296 21 792 176 0 22 chr21 44654184 44654320 -253250 - AluJo SINE Alu -169 133 1 1719 103 0 0 chr21 44654470 44654703 -252867 + AluSg SINE Alu 1 233 -77 806 338 46 23 chr21 44654922 44655310 -252260 - HERVL LTR ERVL -868 4896 4500 268 224 47 59 chr21 44655481 44655566 -252004 - MER21A LTR ERV1 -124 807 724 822 107 25 0 chr21 44655586 44655707 -251863 - AluJb SINE Alu -188 124 1 797 240 175 42 chr21 44655715 44656023 -251547 - MER21B LTR ERV1 -152 711 363 4462 72 47 22 chr21 44656029 44656813 -250757 - MER11A LTR ERVK 0 1266 225 1848 76 0 8 chr21 44656813 44657063 -250507 - AluY SINE Alu -1 310 63 4462 72 47 22 chr21 44657063 44657294 -250276 - MER11A LTR ERVK -1041 225 1 864 207 72 10 chr21 44657332 44657525 -250045 - MER21B LTR ERV1 -553 310 106 2345 130 68 22 chr21 44657572 44657943 -249627 + MSTA LTR MaLR 1 394 -34 1981 122 17 0 chr21 44657943 44658231 -249339 - AluSx SINE Alu -19 293 1 2345 130 68 22 chr21 44658231 44658268 -249302 + MSTA LTR MaLR 394 428 0 598 307 98 59 chr21 44658415 44658670 -248900 + HERVL LTR ERVL 3436 3710 -1944 1983 98 3 7 chr21 44658670 44658955 -248615 + AluSc SINE Alu 12 295 -14 598 307 98 59 chr21 44658955 44659057 -248513 + HERVL LTR ERVL 3710 3807 -1847 340 319 105 29 chr21 44659238 44659448 -248122 - HERVL LTR ERVL -1127 4527 4302 1512 319 89 36 chr21 44659600 44661079 -246491 - HERVL LTR ERVL -1482 4282 2670 2078 103 20 3 chr21 44661240 44661532 -246038 - AluSg SINE Alu -13 297 1 1654 280 88 16 chr21 44661602 44662269 -245301 - HERVL LTR ERVL -2578 2418 1704 858 212 11 22 chr21 44662272 44662456 -245114 - AluJo SINE Alu -11 301 120 446 327 45 0 chr21 44662486 44662642 -244928 - HERVL LTR ERVL -3424 1572 1410 1125 257 127 76 chr21 44663022 44663575 -243995 + MLT1G LTR MaLR 1 581 -9 278 197 136 15 chr21 44663583 44663649 -243921 - HERVL LTR ERVL -3926 1070 997 1940 131 96 81 chr21 44663762 44664220 -243350 + MLT1C LTR MaLR 1 465 -2 1249 179 8 12 chr21 44664396 44664647 -242923 + AluJo SINE Alu 41 290 -22 1775 152 30 7 chr21 44664721 44665024 -242546 - AluJb SINE Alu -2 310 1 546 236 118 6 chr21 44665427 44665605 -241965 - LTR16A LTR ERVL 0 450 253 21 57 0 0 chr21 44666043 44666078 -241492 + GC_rich Low_complexity Low_complexity 1 35 0 378 276 19 0 chr21 44667550 44667655 -239915 + MIR SINE MIR 111 217 -45 264 250 42 14 chr21 44668054 44668126 -239444 - MIR SINE MIR -60 202 129 2232 92 0 0 chr21 44668196 44668490 -239080 - AluSx SINE Alu -18 294 1 1286 130 175 52 chr21 44668519 44668788 -238782 + AluJo SINE Alu 1 302 0 1411 168 52 8 chr21 44669284 44669552 -238018 + AluJb SINE Alu 11 290 -22 220 358 22 29 chr21 44669878 44670015 -237555 + MIR SINE MIR 81 216 -46 351 0 0 0 chr21 44671177 44671216 -236354 + (TG)n Simple_repeat Simple_repeat 2 40 0 2146 91 0 3 chr21 44671219 44671504 -236066 - AluSg SINE Alu -26 284 1 2279 75 7 3 chr21 44671608 44671903 -235667 + AluSq SINE Alu 1 296 -17 1312 222 105 36 chr21 44671956 44672290 -235280 - MSTD LTR MaLR 0 396 40 243 0 0 0 chr21 44672314 44672341 -235229 + (T)n Simple_repeat Simple_repeat 1 27 0 1447 120 0 27 chr21 44672782 44673007 -234563 + AluSp SINE Alu 1 219 -94 5110 189 54 35 chr21 44673008 44673839 -233731 + Charlie1a DNA MER1_type 73 886 -1875 2240 89 3 0 chr21 44673839 44674142 -233428 - AluSg SINE Alu -6 304 1 5110 189 54 35 chr21 44674142 44674511 -233059 + Charlie1a DNA MER1_type 886 1300 -1461 2436 57 0 0 chr21 44674511 44674811 -232759 + AluY SINE Alu 1 300 -11 5110 189 54 35 chr21 44674811 44674852 -232718 + Charlie1a DNA MER1_type 1300 1339 -116 704 211 0 0 chr21 44674852 44675002 -232568 - FRAM SINE Alu 0 176 27 1456 156 49 55 chr21 44675327 44675478 -232092 + AluJb SINE Alu 1 151 -161 1991 113 13 7 chr21 44675478 44675778 -231792 + AluSx SINE Alu 1 302 -10 1456 156 49 55 chr21 44675778 44675934 -231636 + AluJb SINE Alu 151 306 -6 2001 185 55 2 chr21 44675942 44676358 -231212 + L1MA10 LINE L1 5897 6334 0 192 379 121 7 chr21 44676599 44676739 -230831 + L2 LINE L2 3116 3271 -1 461 258 33 0 chr21 44677156 44677276 -230294 + LTR16B LTR ERVL 188 311 -153 2094 95 6 35 chr21 44677552 44677689 -229881 + AluSq SINE Alu 1 140 -173 2226 85 3 0 chr21 44677689 44677982 -229588 + AluSp SINE Alu 1 294 -19 2010 118 24 0 chr21 44677987 44678276 -229294 + AluSg SINE Alu 1 296 -14 2094 95 6 35 chr21 44678276 44678447 -229123 + AluSq SINE Alu 144 306 -7 1520 177 50 7 chr21 44678545 44678827 -228743 - AluJo SINE Alu -8 294 1 655 159 9 9 chr21 44678836 44678949 -228621 - L1MC1 LINE L1 -13 6320 6208 1610 165 89 21 chr21 44679529 44679856 -227714 + MLT1B LTR MaLR 35 383 -7 962 184 68 0 chr21 44680370 44680560 -227010 + MER3 DNA MER1_type 3 205 -4 1118 191 42 0 chr21 44680749 44680964 -226606 + AluJb SINE Alu 72 295 -17 2285 109 0 0 chr21 44681000 44681312 -226258 - AluSx SINE Alu 0 312 1 579 325 205 20 chr21 44681448 44681990 -225580 - L2 LINE L2 -607 2707 2066 633 179 0 90 chr21 44682133 44682278 -225292 - FLAM_A SINE Alu -1 132 1 361 251 80 91 chr21 44683333 44683450 -224120 - L1ME3A LINE L1 -195 6044 5928 2196 69 10 36 chr21 44683450 44683753 -223817 + AluY SINE Alu 1 295 -16 361 251 80 91 chr21 44683753 44683834 -223736 - L1ME3A LINE L1 -311 5928 5848 1882 138 3 13 chr21 44684149 44684453 -223117 - AluSx SINE Alu -11 301 1 1921 102 58 0 chr21 44684761 44685036 -222534 + AluSg SINE Alu 3 293 -17 225 0 0 0 chr21 44685040 44685065 -222505 + (TG)n Simple_repeat Simple_repeat 2 26 0 2030 109 3 32 chr21 44685066 44685379 -222191 - AluSx SINE Alu -8 304 1 837 257 181 42 chr21 44685382 44685712 -221858 - L1ME3A LINE L1 -1127 5088 4805 2359 61 3 0 chr21 44685712 44686007 -221563 - AluSp SINE Alu -16 297 2 837 257 181 42 chr21 44686007 44686206 -221364 - L1ME3A LINE L1 -1410 4805 4485 362 269 308 5 chr21 44686208 44686416 -221154 - L1ME3A LINE L1 -5336 1060 790 1658 160 17 24 chr21 44687036 44687329 -220241 - AluJo SINE Alu -21 291 1 2424 98 33 19 chr21 44687608 44687967 -219603 - THE1B LTR MaLR 0 364 1 612 134 54 18 chr21 44688474 44688586 -218984 + FRAM SINE Alu 60 175 -1 2519 224 62 13 chr21 44688586 44689183 -218387 - L1ME1 LINE L1 -116 6050 5425 746 199 49 37 chr21 44689195 44689265 -218305 + L1ME3A LINE L1 3118 3186 -2960 2241 98 7 0 chr21 44689265 44689571 -217999 + AluSx SINE Alu 1 308 -4 746 199 49 37 chr21 44689571 44689746 -217824 + L1ME3A LINE L1 3186 3366 -2780 2128 168 73 5 chr21 44689755 44690166 -217404 + Tigger3b DNA MER2_type 3 441 -790 211 289 109 47 chr21 44691056 44691184 -216386 + MIR SINE MIR 113 248 -14 352 261 185 8 chr21 44691622 44691752 -215818 - MER5A DNA MER1_type 0 189 37 1595 201 91 30 chr21 44691757 44692186 -215384 - L1ME1 LINE L1 -3 6163 5709 317 143 0 0 chr21 44692452 44692501 -215069 - FLAM SINE Alu -7 126 78 385 290 78 32 chr21 44692659 44692733 -214837 + L1ME3A LINE L1 4542 4611 -1535 189 0 0 0 chr21 44692733 44692754 -214816 + (TG)n Simple_repeat Simple_repeat 2 22 0 385 290 78 32 chr21 44692754 44692896 -214674 + L1ME3A LINE L1 4611 4768 -1378 687 248 86 60 chr21 44692962 44693287 -214283 + L1ME3A LINE L1 4911 5247 -899 2276 102 0 0 chr21 44693287 44693591 -213979 + AluSg SINE Alu 1 304 -6 687 248 86 60 chr21 44693591 44693616 -213954 + L1ME3A LINE L1 5247 5270 -876 377 316 0 0 chr21 44693621 44693716 -213854 + MER3 DNA MER1_type 1 95 -114 1491 184 41 0 chr21 44693719 44693985 -213585 - AluJo SINE Alu -30 282 6 390 261 78 33 chr21 44694019 44694172 -213398 + L1ME3A LINE L1 5274 5433 -688 427 328 132 38 chr21 44694248 44694748 -212822 + L1ME3A LINE L1 5624 6170 0 817 349 87 36 chr21 44694788 44695637 -211933 + L1MC/D LINE L1 3938 4829 -1317 627 291 65 30 chr21 44696047 44696371 -211199 + L1MC/D LINE L1 5351 5635 -486 218 167 0 0 chr21 44696559 44696595 -210975 + (CA)n Simple_repeat Simple_repeat 2 37 0 246 193 0 0 chr21 44696595 44696652 -210918 + (TG)n Simple_repeat Simple_repeat 1 57 0 466 284 77 0 chr21 44697011 44697166 -210404 - MLT1G LTR MaLR -392 198 32 340 289 47 39 chr21 44699020 44699148 -208422 - L1ME4a LINE L1 -1 6120 5992 2077 221 22 32 chr21 44699354 44699942 -207628 - L1M4 LINE L1 -869 5277 4696 1414 192 33 60 chr21 44700027 44700177 -207393 + MLT1A2 LTR MaLR 18 171 -203 1636 138 105 0 chr21 44700177 44700453 -207117 + AluSg SINE Alu 1 305 -5 1414 192 33 60 chr21 44700453 44700667 -206903 + MLT1A2 LTR MaLR 171 372 -2 555 287 97 4 chr21 44700968 44701226 -206344 - HAL1 LINE L1 -845 1662 1381 463 241 53 116 chr21 44701332 44701763 -205807 - L1MC5 LINE L1 -63 7898 7495 1279 256 75 74 chr21 44701822 44702525 -205045 - L1MC5 LINE L1 -620 7341 6638 601 0 22 33 chr21 44702620 44702676 -204894 + (TTCTC)n Simple_repeat Simple_repeat 1 146 0 601 0 22 33 chr21 44702676 44702768 -204802 + (TTCTC)n Simple_repeat Simple_repeat 5 95 0 2123 95 3 0 chr21 44702777 44703060 -204510 - AluSp SINE Alu -25 288 5 1360 179 45 39 chr21 44703100 44703288 -204282 - AluJo SINE Alu -2 310 118 2053 110 3 0 chr21 44703288 44703578 -203992 + AluSg SINE Alu 1 291 -19 1360 179 45 39 chr21 44703578 44703697 -203873 - AluJo SINE Alu -194 118 1 1617 99 36 0 chr21 44703964 44704186 -203384 + MER30 DNA MER1_type 1 230 0 271 267 74 22 chr21 44704206 44704341 -203229 - L1MC4a LINE L1 -1571 6237 6096 334 250 58 70 chr21 44707270 44707426 -200144 - MIR3 SINE MIR -39 169 16 1627 182 0 26 chr21 44708911 44709219 -198351 - AluJo SINE Alu -12 300 1 1670 181 14 0 chr21 44709630 44709922 -197648 - AluJo SINE Alu -10 302 7 2259 90 0 0 chr21 44709934 44710234 -197336 - AluSx SINE Alu -2 310 11 2109 122 0 10 chr21 44710537 44710840 -196730 + AluSx SINE Alu 1 300 -12 2011 116 0 0 chr21 44711065 44711522 -196048 - AluSx SINE Alu 0 457 1 26 0 0 0 chr21 44712551 44712577 -194993 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr21 44712722 44712764 -194806 + AT_rich Low_complexity Low_complexity 1 42 0 3183 220 33 47 chr21 44712768 44712823 -194747 - L1ME1 LINE L1 -5 6161 6107 2122 87 0 7 chr21 44712823 44713110 -194460 + AluY SINE Alu 1 285 -26 3183 220 33 47 chr21 44713110 44713622 -193948 - L1ME1 LINE L1 -59 6107 5608 1987 127 3 3 chr21 44713622 44713914 -193656 - AluSx SINE Alu -20 292 1 3183 220 33 47 chr21 44713914 44714223 -193347 - L1ME1 LINE L1 -558 5608 5296 387 0 0 0 chr21 44714223 44714266 -193304 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 2046 207 57 20 chr21 44714266 44714288 -193282 - L1ME1 LINE L1 -847 5299 5279 1627 125 103 0 chr21 44714288 44714569 -193001 - AluSg SINE Alu 0 310 1 2046 207 57 20 chr21 44714569 44715179 -192391 - L1ME1 LINE L1 -867 5279 4690 1356 144 17 132 chr21 44715186 44715534 -192036 - AluSc SINE Alu -1 308 1 1469 179 13 33 chr21 44715539 44715840 -191730 - AluJo SINE Alu -17 295 1 2339 53 0 0 chr21 44715850 44716133 -191437 - AluY SINE Alu -7 304 22 395 273 40 0 chr21 44716136 44716235 -191335 - Charlie1 DNA MER1_type -2657 104 2 2159 102 7 0 chr21 44716237 44716541 -191029 + AluSc SINE Alu 1 306 -3 209 304 0 0 chr21 44716548 44716604 -190966 + L2 LINE L2 3213 3268 -4 3558 69 9 4 chr21 44717504 44717955 -189615 - MLT2A2 LTR ERVL 0 453 1 2355 75 0 10 chr21 44718124 44718429 -189141 - AluY SINE Alu -9 302 1 366 243 0 19 chr21 44719342 44719449 -188121 - L1ME3A LINE L1 -204 5966 5862 385 254 173 29 chr21 44719458 44719631 -187939 - L1ME3A LINE L1 -43 6521 6324 3010 247 85 64 chr21 44719641 44720126 -187444 - L1ME3A LINE L1 -344 6220 5747 1553 136 18 100 chr21 44720126 44720456 -187114 - AluJo SINE Alu -9 303 1 3010 247 85 64 chr21 44720456 44721169 -186401 - L1ME3A LINE L1 -817 5747 5051 1407 118 4 49 chr21 44721169 44721415 -186155 + MER46A DNA MER2_type 2 236 0 3010 247 85 64 chr21 44721415 44721650 -185920 - L1ME3A LINE L1 -1513 5051 4822 2308 61 3 10 chr21 44721650 44721946 -185624 + AluY SINE Alu 2 295 -16 3010 247 85 64 chr21 44721946 44722600 -184970 - L1ME3A LINE L1 -1742 4822 4084 386 302 86 7 chr21 44722801 44722940 -184630 + LTR16A LTR ERVL 301 450 0 1472 193 7 3 chr21 44723036 44723332 -184238 - AluJb SINE Alu -15 297 1 331 288 51 8 chr21 44723376 44723494 -184076 - L1ME3A LINE L1 -4453 2087 1965 500 260 59 75 chr21 44723733 44723981 -183589 - L1ME3A LINE L1 -5039 1682 1445 2248 88 0 7 chr21 44723981 44724289 -183281 - AluY SINE Alu -5 306 1 500 260 59 75 chr21 44724289 44724547 -183023 - L1ME3A LINE L1 -5276 1445 1184 1895 124 9 53 chr21 44724551 44724874 -182696 - AluJb SINE Alu -3 309 1 1155 252 121 31 chr21 44725548 44726060 -181510 - L1ME3A LINE L1 -296 5874 5317 1942 146 0 0 chr21 44726071 44726358 -181212 + AluSx SINE Alu 1 287 -25 3630 120 9 6 chr21 44726367 44726916 -180654 - MER41B LTR ERV1 -84 551 1 3202 98 31 35 chr21 44726916 44727359 -180211 - MER41B-int LTR ERV1 0 5946 5504 2470 71 0 0 chr21 44727359 44727670 -179900 - AluY SINE Alu 0 311 1 3202 98 31 35 chr21 44727670 44727708 -179862 - MER41B-int LTR ERV1 -442 5504 5467 8207 113 38 30 chr21 44727711 44728677 -178893 - MER41B-int LTR ERV1 -1354 4592 3793 2169 123 0 0 chr21 44728677 44728985 -178585 - AluSx SINE Alu -4 308 1 8207 113 38 30 chr21 44728985 44729517 -178053 - MER41B-int LTR ERV1 -2153 3793 3267 4560 110 49 6 chr21 44729517 44730358 -177212 - MER41B-int LTR ERV1 -2890 3166 2354 269 111 89 0 chr21 44730359 44730404 -177166 - MER41B-int LTR ERV1 -3934 2012 1964 25 0 0 0 chr21 44730404 44730429 -177141 + AT_rich Low_complexity Low_complexity 1 25 0 2200 85 3 0 chr21 44730429 44730711 -176859 - AluSp SINE Alu -20 293 11 1926 81 27 68 chr21 44730724 44731041 -176529 - AluSg SINE Alu 0 305 1 436 168 243 9 chr21 44731041 44731148 -176422 - MER41B-int LTR ERV1 -3970 1976 1845 * 1281 156 41 0 chr21 44731124 44731342 -176228 - MER41B-int LTR ERV1 -4328 1618 1392 4656 117 23 18 chr21 44731343 44732029 -175541 - MER41B-int LTR ERV1 -5256 690 1 1059 117 0 0 chr21 44732029 44732183 -175387 - MER41B LTR ERV1 0 635 482 1909 270 98 63 chr21 44732208 44732371 -175199 - L1ME3A LINE L1 -860 5286 5130 2020 131 3 3 chr21 44732371 44732683 -174887 - AluSx SINE Alu 0 312 1 1909 270 98 63 chr21 44732683 44733115 -174455 - L1ME3A LINE L1 -1016 5130 4715 647 157 20 0 chr21 44733115 44733217 -174353 + U6 snRNA snRNA 2 105 -2 1909 270 98 63 chr21 44733217 44733360 -174210 - L1ME3A LINE L1 -1431 4715 4578 2195 80 0 7 chr21 44733360 44733707 -173863 - AluSq SINE Alu 0 345 1 1909 270 98 63 chr21 44733707 44733894 -173676 - L1ME3A LINE L1 -1568 4578 4399 1941 125 7 3 chr21 44733894 44734191 -173379 - AluSq SINE Alu -15 298 1 1909 270 98 63 chr21 44734191 44734744 -172826 - L1ME3A LINE L1 -1747 4399 3752 2004 123 10 3 chr21 44734822 44735122 -172448 - AluSx SINE Alu -10 302 1 387 322 118 31 chr21 44735783 44736034 -171536 + L1ME4a LINE L1 5771 6058 -63 1669 141 79 3 chr21 44736034 44736324 -171246 - AluSx SINE Alu 0 312 1 387 322 118 31 chr21 44736324 44736395 -171175 + L1ME4a LINE L1 6058 6121 0 300 266 0 0 chr21 44736420 44736499 -171071 + L1ME LINE L1 5689 5767 -354 2133 106 3 3 chr21 44736814 44737116 -170454 + AluSx SINE Alu 1 302 -10 914 211 45 0 chr21 44737415 44737614 -169956 - MER3 DNA MER1_type 0 209 2 280 256 131 25 chr21 44737736 44737896 -169674 + HAL1 LINE L1 738 914 -1593 322 292 62 49 chr21 44737911 44738055 -169515 + HAL1 LINE L1 883 1028 -1479 756 266 158 29 chr21 44738062 44738573 -168997 + HAL1 LINE L1 1154 1730 -777 384 321 80 46 chr21 44740514 44740751 -166819 + L1M4 LINE L1 4413 4657 -1489 320 248 69 30 chr21 44741311 44741412 -166158 - MER3 DNA MER1_type 0 209 105 302 77 0 19 chr21 44742763 44742815 -164755 - L1MA7 LINE L1 -3 6288 6238 766 186 0 0 chr21 44742935 44743059 -164511 + FLAM_C SINE Alu 2 125 -18 24 53 0 0 chr21 44743065 44743103 -164467 + AT_rich Low_complexity Low_complexity 1 38 0 1745 175 7 0 chr21 44743292 44743589 -163981 + 7SLRNA srpRNA srpRNA 1 299 -21 2255 112 0 0 chr21 44744118 44744423 -163147 + AluSx SINE Alu 1 305 -7 2310 89 0 3 chr21 44748228 44748532 -159038 + AluSq SINE Alu 1 303 -10 300 195 73 47 chr21 44748677 44748791 -158779 - MLT1G LTR MaLR 0 590 410 419 232 236 23 chr21 44748850 44749125 -158445 - MLT1G LTR MaLR -292 298 12 873 85 0 0 chr21 44749450 44749568 -158002 - AluSc SINE Alu -16 293 176 275 309 25 0 chr21 44749796 44749877 -157693 - MIR SINE MIR -24 238 156 1334 239 72 41 chr21 44751776 44752194 -155376 - LTR47B LTR ERVL 0 443 13 24 32 0 0 chr21 44752430 44752461 -155109 + AT_rich Low_complexity Low_complexity 1 31 0 794 176 35 70 chr21 44753813 44754040 -153530 + MER20 DNA MER1_type 1 219 0 1806 134 10 22 chr21 44755153 44755466 -152104 - AluJo SINE Alu -3 309 1 324 48 0 0 chr21 44755671 44755713 -151857 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr21 44756930 44756951 -150619 + AT_rich Low_complexity Low_complexity 1 21 0 1199 175 106 20 chr21 44757510 44757802 -149768 - L1MA7 LINE L1 0 6291 5975 273 266 43 0 chr21 44757840 44757934 -149636 - L1MC4a LINE L1 -1869 5939 5842 258 309 107 0 chr21 44760223 44760307 -147263 + L2 LINE L2 3181 3273 -40 969 76 0 0 chr21 44761384 44761503 -146067 + AluSq/x SINE Alu 7 125 -187 2224 86 0 7 chr21 44763898 44764201 -143369 + AluSc SINE Alu 1 301 -8 2171 110 7 0 chr21 44766312 44766620 -140950 + AluSx SINE Alu 1 310 -2 235 182 0 23 chr21 44770738 44770782 -136788 - MIR SINE MIR -108 154 112 2280 85 0 0 chr21 44775734 44776029 -131541 + AluY SINE Alu 1 295 -16 260 253 74 0 chr21 44777270 44777365 -130205 - L1ME4a LINE L1 -1 6120 6019 23 54 0 0 chr21 44777411 44777448 -130122 + AT_rich Low_complexity Low_complexity 1 37 0 1644 126 81 36 chr21 44778259 44778496 -129074 + L1MEc LINE L1 1263 1519 -4865 2050 153 21 24 chr21 44778496 44778830 -128740 + MER1B DNA MER1_type 5 337 0 1644 126 81 36 chr21 44778830 44778901 -128669 + L1MEc LINE L1 1519 1585 -4799 * 5324 78 0 1 chr21 44778896 44779593 -127977 - L1P LINE L1 -1495 4651 3956 1653 131 146 0 chr21 44779593 44779936 -127634 + Tigger3(Golem) DNA MER2_type 2331 2723 -306 2035 132 121 6 chr21 44779951 44780291 -127279 + MSTC LTR MaLR 47 425 -3 1653 151 48 32 chr21 44780291 44780592 -126978 + Tigger3(Golem) DNA MER2_type 2723 3028 -1 8085 211 86 20 chr21 44780592 44780875 -126695 + L1M4c LINE L1 2214 2477 -3905 1512 177 61 7 chr21 44780875 44781169 -126401 + AluJb SINE Alu 3 312 0 8085 211 86 20 chr21 44781169 44783466 -124104 + L1M4c LINE L1 2477 4953 -1429 369 264 112 0 chr21 44783496 44783621 -123949 + L1MEc LINE L1 1785 1923 -4640 * 25957 162 27 22 chr21 44783619 44785527 -122043 - L1PA10 LINE L1 -8 6475 4577 2321 89 0 0 chr21 44785527 44785829 -121741 + AluSc SINE Alu 1 302 -7 25957 162 27 22 chr21 44785829 44790258 -117312 - L1PA10 LINE L1 -1906 4577 7 4831 219 93 32 chr21 44790389 44791033 -116537 + L1MEc LINE L1 2385 2989 -3393 1593 214 52 18 chr21 44791033 44791416 -116154 + MSTD LTR MaLR 1 396 0 4831 219 93 32 chr21 44791416 44792143 -115427 + L1MEc LINE L1 2989 3671 -2711 369 0 0 0 chr21 44792143 44792184 -115386 + (TA)n Simple_repeat Simple_repeat 1 41 0 2327 82 13 0 chr21 44792184 44792488 -115082 - AluY SINE Alu -3 308 1 4831 219 93 32 chr21 44792488 44792767 -114803 + L1MEc LINE L1 3670 4137 -2245 416 182 45 0 chr21 44792769 44792855 -114715 + LTR28 LTR ERV1 30 94 -926 778 218 56 0 chr21 44792864 44793043 -114527 + L1PB1 LINE L1 6 194 -6669 13989 183 57 14 chr21 44793043 44795063 -112507 + L1PB1 LINE L1 903 2835 -4032 2038 83 43 4 chr21 44795063 44795340 -112230 + AluY SINE Alu 1 288 -23 13989 183 57 14 chr21 44795340 44798732 -108838 + L1PB1 LINE L1 2835 6081 -786 1794 112 63 112 chr21 44798732 44799115 -108455 + THE1B LTR MaLR 1 364 0 11711 98 9 1 chr21 44799115 44800682 -106888 + THE1B-int LTR MaLR 1 1580 0 2078 119 58 47 chr21 44800682 44801042 -106528 + THE1B LTR MaLR 1 364 0 13989 183 57 14 chr21 44801042 44801212 -106358 + L1PB1 LINE L1 6080 6867 0 2371 209 55 52 chr21 44801242 44801506 -106064 + LTR28 LTR ERV1 85 347 -673 2247 72 7 0 chr21 44801506 44801798 -105772 + AluY SINE Alu 1 294 -17 2371 209 55 52 chr21 44801798 44802154 -105416 + LTR28 LTR ERV1 347 707 -313 271 191 226 48 chr21 44802206 44802374 -105196 + L1MEc LINE L1 4119 4316 -2066 351 217 217 0 chr21 44805222 44805351 -102219 - MER45A DNA AcHobo 0 178 22 239 209 0 0 chr21 44805680 44805723 -101847 + MLT1L LTR MaLR 174 216 -399 2037 69 0 0 chr21 44805850 44806110 -101460 - AluSg SINE Alu -17 293 34 232 240 120 0 chr21 44806741 44806791 -100779 + L1M2 LINE L1 411 466 -6383 1909 146 7 16 chr21 44807755 44808063 -99507 + AluJb SINE Alu 1 305 -7 214 263 188 0 chr21 44808292 44808372 -99198 - MIR SINE MIR 0 262 168 265 319 17 9 chr21 44810161 44810277 -97293 + LTR33 LTR ERVL 104 220 -301 204 167 0 0 chr21 44813233 44813269 -94301 - L3 LINE CR1 -7 1570 1535 300 286 196 0 chr21 44814300 44814412 -93158 + MIR SINE MIR 48 181 -81 2010 278 47 14 chr21 44814713 44815547 -92023 + MERVL LTR ERVL 1511 2316 -3448 3114 178 18 9 chr21 44815547 44816098 -91472 - MER41D LTR ERV1 0 557 2 2010 278 47 14 chr21 44816098 44817534 -90036 + MERVL LTR ERVL 2316 3998 -1766 662 253 101 97 chr21 44817904 44818359 -89211 - LTR40c LTR ERVL -7 458 2 476 149 74 58 chr21 44818507 44818628 -88942 + LTR41 LTR ERVL 650 772 -1 2679 45 0 3 chr21 44818713 44819022 -88548 + AluY SINE Alu 1 308 -3 3381 219 26 7 chr21 44819101 44820368 -87202 - L1MCa LINE L1 -3016 3410 2119 285 148 19 0 chr21 44820374 44820428 -87142 - L1MCa LINE L1 -4505 1921 1867 5885 116 29 47 chr21 44820428 44821089 -86481 - L1PA13 LINE L1 -1 6162 5508 2145 91 3 88 chr21 44821089 44821430 -86140 - AluSx SINE Alu 0 312 1 5885 116 29 47 chr21 44821430 44821929 -85641 - L1PA13 LINE L1 -655 5508 5002 11523 165 12 20 chr21 44821941 44823320 -84250 - L1PA13 LINE L1 -1927 4219 2863 2091 162 0 0 chr21 44823320 44823628 -83942 - AluSx SINE Alu -4 308 1 11523 165 12 20 chr21 44823628 44824389 -83181 - L1PA13 LINE L1 -3283 2863 2097 790 142 90 39 chr21 44824389 44824550 -83020 - L1MCa LINE L1 -4550 1876 1610 2803 73 24 14 chr21 44824550 44824921 -82649 - THE1C LTR MaLR 0 375 1 790 142 90 39 chr21 44824921 44824951 -82619 - L1MCa LINE L1 -4816 1610 1583 4145 118 31 183 chr21 44824954 44825262 -82308 + Tigger3b DNA MER2_type 5 358 -2671 539 15 15 0 chr21 44825262 44825330 -82240 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 4145 118 31 183 chr21 44825330 44825770 -81800 + Tigger3b DNA MER2_type 358 863 -2166 2251 123 0 0 chr21 44825770 44826072 -81498 - AluSx SINE Alu -9 303 2 4145 118 31 183 chr21 44826072 44826112 -81458 + Tigger3b DNA MER2_type 863 907 -2122 612 184 0 72 chr21 44826112 44826257 -81313 + FLAM_C SINE Alu 3 138 0 4145 118 31 183 chr21 44826257 44826779 -80791 + Tigger3b DNA MER2_type 907 1231 -1 7546 159 67 19 chr21 44826780 44828274 -79296 - L1MCa LINE L1 -4841 1585 21 2110 120 14 0 chr21 44830410 44830702 -76868 + AluSx SINE Alu 16 311 -1 2038 103 44 11 chr21 44830884 44831157 -76413 + AluSq SINE Alu 1 282 -31 27 0 0 0 chr21 44831157 44831184 -76386 + AT_rich Low_complexity Low_complexity 1 27 0 253 206 73 0 chr21 44832417 44832485 -75085 - MIR SINE MIR -188 74 2 1953 159 10 0 chr21 44832551 44832841 -74729 - AluSx SINE Alu -19 293 1 322 209 165 44 chr21 44832841 44832932 -74638 - MLT1G1 LTR MaLR -490 105 4 256 320 58 32 chr21 44833441 44833597 -73973 - MLT1-int LTR MaLR -525 846 687 661 263 240 15 chr21 44834181 44834648 -72922 - MLT1G LTR MaLR 0 590 19 2598 98 8 19 chr21 44834696 44835073 -72497 - THE1C LTR MaLR -2 373 1 1659 174 33 76 chr21 44835074 44835162 -72408 + MLT1B LTR MaLR 7 97 -293 2421 149 71 2 chr21 44835162 44835585 -71985 - LTR47A LTR ERVL 0 452 1 1659 174 33 76 chr21 44835585 44835892 -71678 + MLT1B LTR MaLR 97 385 -5 896 242 109 39 chr21 44835940 44836225 -71345 - MLT1E LTR MaLR -221 372 68 610 287 75 39 chr21 44836250 44836609 -70961 + LTR52 LTR ERVL 35 406 -15 699 252 61 99 chr21 44836705 44837279 -70291 - L1MEc LINE L1 -3424 2791 2242 2096 132 0 20 chr21 44837279 44837583 -69987 + AluSx SINE Alu 1 298 -14 699 252 61 99 chr21 44837583 44837644 -69926 - L1MEc LINE L1 -3973 2242 2180 713 74 0 0 chr21 44837662 44837757 -69813 - L1PA7 LINE L1 -2 6152 6058 325 348 113 16 chr21 44837757 44838067 -69503 - L1MEc LINE L1 -4180 2216 1877 6518 54 16 4 chr21 44838302 44839130 -68440 - L1PA7 LINE L1 0 6154 5317 921 125 0 0 chr21 44839106 44839285 -68285 - L1P3 LINE L1 -4687 1459 1289 * 10971 122 87 64 chr21 44839287 44840647 -66923 - MER4A-int LTR ERV1 -4192 2406 968 1995 136 10 7 chr21 44840647 44840942 -66628 + AluSx SINE Alu 1 296 -16 10971 122 87 64 chr21 44840942 44841933 -65637 - MER4A-int LTR ERV1 -5630 968 1 1843 155 42 96 chr21 44841936 44842582 -64988 - MER4A LTR ERV1 0 664 9 22 35 0 0 chr21 44843098 44843127 -64443 + GC_rich Low_complexity Low_complexity 1 29 0 290 172 31 0 chr21 44845240 44845304 -62266 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 849 213 7 0 chr21 44845318 44845473 -62097 + FAM SINE Alu 16 171 -14 478 297 192 6 chr21 44845864 44846177 -61393 - L1MC/D LINE L1 -2018 5790 5420 2306 233 102 49 chr21 44846255 44847184 -60386 - L1MEc LINE L1 -2856 3788 2759 309 26 0 0 chr21 44847184 44847222 -60348 + (TG)n Simple_repeat Simple_repeat 2 39 0 2306 233 102 49 chr21 44847222 44847903 -59667 - L1MEc LINE L1 -3885 2759 2115 2112 69 0 8 chr21 44847933 44848194 -59376 - AluY SINE Alu -9 302 44 321 275 47 28 chr21 44848203 44848414 -59156 - L1MEc LINE L1 -4927 1615 1401 933 157 0 0 chr21 44848495 44848635 -58935 + AluJb SINE Alu 160 299 -13 294 311 47 36 chr21 44848657 44848900 -58670 + L1MC4a LINE L1 5645 5817 -304 2056 129 0 23 chr21 44848900 44849209 -58361 + AluSx SINE Alu 1 302 -10 270 81 0 0 chr21 44849214 44849251 -58319 + (TG)n Simple_repeat Simple_repeat 2 38 0 415 317 113 14 chr21 44849397 44849863 -57707 + L1ME4a LINE L1 5309 5827 -294 370 253 40 33 chr21 44849967 44850117 -57453 + L1ME4a LINE L1 5968 6118 -3 2090 133 0 13 chr21 44850235 44850543 -57027 + AluSx SINE Alu 1 304 -8 1178 224 53 29 chr21 44852075 44852356 -55214 - MER58B DNA MER1_type -53 288 1 1665 143 3 95 chr21 44852448 44852784 -54786 + AluJo SINE Alu 1 305 -7 822 204 12 12 chr21 44852814 44852976 -54594 + FRAM SINE Alu 1 162 -14 2066 142 10 0 chr21 44853199 44853508 -54062 - AluSx SINE Alu 0 312 1 417 251 173 46 chr21 44853984 44854291 -53279 - L1MC4a LINE L1 -1914 5894 5549 571 191 33 5 chr21 44854296 44854454 -53116 - MLT1A1 LTR MaLR -3 362 225 353 222 100 0 chr21 44854486 44854576 -52994 - MLT1A1 LTR MaLR -266 99 1 653 228 18 24 chr21 44854991 44855158 -52412 - FRAM SINE Alu 0 166 1 22 88 0 0 chr21 44855184 44855241 -52329 + AT_rich Low_complexity Low_complexity 1 57 0 265 239 0 87 chr21 44855738 44855830 -51740 - L1M4 LINE L1 -3461 2685 2602 227 243 165 0 chr21 44859593 44859696 -47874 + L1ME4a LINE L1 4896 5015 -1131 288 287 9 9 chr21 44860087 44860195 -47375 + L1ME4a LINE L1 5497 5604 -517 195 100 0 0 chr21 44861416 44861446 -46124 + (T)n Simple_repeat Simple_repeat 1 30 0 442 203 231 32 chr21 44861630 44861881 -45689 + L1ME4a LINE L1 5642 5942 -179 286 339 9 0 chr21 44861893 44862002 -45568 + L1MD2 LINE L1 20 129 -6411 1135 192 20 0 chr21 44862160 44862363 -45207 - MER2 DNA MER2_type -138 207 1 2020 228 44 15 chr21 44862459 44863077 -44493 + L1MD2 LINE L1 3783 4418 -2122 1053 242 140 10 chr21 44863072 44863465 -44105 + L1MD2 LINE L1 4624 5067 -1473 * 2258 145 52 32 chr21 44863472 44863879 -43691 + MSTB1 LTR MaLR 16 430 -2 2718 238 77 23 chr21 44863879 44865260 -42310 + L1MD2 LINE L1 5061 6516 -237 384 217 80 46 chr21 44865316 44865491 -42079 + L1ME4a LINE L1 5930 6110 -11 546 211 28 0 chr21 44865625 44865734 -41836 - MER45B DNA AcHobo -623 417 306 329 312 110 6 chr21 44866955 44867128 -40442 + L1MC/D LINE L1 5285 5475 -2333 22 0 0 0 chr21 44867444 44867466 -40104 + AT_rich Low_complexity Low_complexity 1 22 0 373 200 6 73 chr21 44869438 44869603 -37967 + G-rich Low_complexity Low_complexity 6 159 0 218 204 23 0 chr21 44872397 44872441 -35129 + L2 LINE L2 3269 3313 0 23 78 0 0 chr21 44872567 44872618 -34952 + AT_rich Low_complexity Low_complexity 1 51 0 1899 135 0 20 chr21 44872618 44872922 -34648 + AluJo SINE Alu 1 298 -14 1287 261 194 21 chr21 44872923 44873747 -33823 - L1ME3A LINE L1 -15 6155 5188 2297 92 3 0 chr21 44873797 44874101 -33469 - AluSx SINE Alu -7 305 1 777 205 0 0 chr21 44874190 44874317 -33253 + AluJo SINE Alu 9 135 -177 1975 104 0 0 chr21 44874317 44874586 -32984 + AluSx SINE Alu 1 269 -43 5533 19 0 0 chr21 44876262 44876881 -30689 - L1PA3 LINE L1 -4 6151 5533 1621 230 176 35 chr21 44878908 44879430 -28140 - MLT1E2 LTR MaLR 0 626 31 232 296 0 45 chr21 44879484 44879572 -27998 - L1ME LINE L1 -524 5646 5563 1149 241 111 26 chr21 44879587 44880011 -27559 - L1ME LINE L1 -1330 4816 4337 1322 147 29 109 chr21 44880011 44880324 -27246 + AluJo SINE Alu 1 288 -24 1149 241 111 26 chr21 44880324 44880429 -27141 - L1ME LINE L1 -1809 4337 4242 2202 206 9 7 chr21 44880440 44881016 -26554 + L1MA4A LINE L1 5643 6280 -23 384 345 102 5 chr21 44881123 44881320 -26250 - MIR SINE MIR -15 247 32 22 56 0 0 chr21 44881654 44881690 -25880 + AT_rich Low_complexity Low_complexity 1 36 0 252 284 29 17 chr21 44882079 44882184 -25386 + GA-rich Low_complexity Low_complexity 1 106 0 585 324 84 14 chr21 44882556 44882808 -24762 + L2 LINE L2 2731 2964 -349 1627 120 0 47 chr21 44882808 44883082 -24488 - AluSx SINE Alu -8 304 44 585 324 84 14 chr21 44883082 44883367 -24203 + L2 LINE L2 2964 3307 -6 7330 47 9 6 chr21 44883906 44885202 -22368 - L1PA7 LINE L1 0 6154 4854 856 243 66 3 chr21 44885277 44885565 -22005 + L1ME1 LINE L1 5622 5927 -239 1304 150 58 68 chr21 44885565 44885858 -21712 - AluJb SINE Alu -14 298 9 690 254 78 0 chr21 44885872 44886089 -21481 + L1ME1 LINE L1 5925 6158 -8 333 301 118 68 chr21 44886531 44886956 -20614 - MLT1K LTR MaLR -9 579 134 673 301 131 17 chr21 44887270 44887729 -19841 + HAL1 LINE L1 164 674 -1833 445 199 41 17 chr21 44887815 44888029 -19541 + MER74A LTR ERVL 1 247 -311 22 35 0 0 chr21 44888749 44888778 -18792 + AT_rich Low_complexity Low_complexity 1 29 0 644 289 78 35 chr21 44889918 44890202 -17368 - MLT1I LTR MaLR 0 409 114 378 0 0 0 chr21 44890202 44890244 -17326 + (A)n Simple_repeat Simple_repeat 1 42 0 246 154 0 0 chr21 44890309 44890348 -17222 - MLT1I LTR MaLR -368 41 3 234 287 0 17 chr21 44890587 44890768 -16802 + (TTAGGG)n Simple_repeat Simple_repeat 2 179 0 1692 156 12 13 chr21 44891455 44891801 -15769 - MER4A LTR ERV1 0 664 261 618 122 10 10 chr21 44891801 44891899 -15671 - MER4A LTR ERV1 -566 98 1 4976 226 169 20 chr21 44892767 44894123 -13447 - L1MC3 LINE L1 -1 7784 6106 1773 169 43 70 chr21 44894123 44894567 -13003 - MSTB1 LTR MaLR 0 432 1 4976 226 169 20 chr21 44894567 44894972 -12598 - L1MC3 LINE L1 -1679 6106 5762 296 182 9 91 chr21 44895099 44895209 -12361 - MER72-int LTR ERV1 -561 4375 4275 1416 143 0 0 chr21 44895212 44895435 -12135 - AluJb SINE Alu -22 290 68 2060 199 32 7 chr21 44895474 44895905 -11665 - MER72-int LTR ERV1 -636 4300 3859 1339 260 44 8 chr21 44895943 44896305 -11265 - LTR10C LTR ERV1 -29 562 188 297 0 0 0 chr21 44896325 44896358 -11212 + (CA)n Simple_repeat Simple_repeat 2 34 0 3064 214 44 75 chr21 44896414 44897206 -10364 - MER72-int LTR ERV1 -1063 3873 3145 2207 103 0 0 chr21 44897206 44897506 -10064 - AluY SINE Alu -10 301 2 3064 214 44 75 chr21 44897506 44897707 -9863 - MER72-int LTR ERV1 -1791 3145 2939 1256 191 88 64 chr21 44897734 44898201 -9369 - MER72-int LTR ERV1 -2760 2176 1699 1562 208 20 27 chr21 44898805 44899252 -8318 - MER72-int LTR ERV1 -3430 1506 1063 330 221 29 0 chr21 44899255 44899323 -8247 + MLT2B3 LTR ERVL 3 72 -482 404 147 29 0 chr21 44899348 44899416 -8154 + MLT2B3 LTR ERVL 3 72 -482 371 162 29 0 chr21 44899441 44899509 -8061 + MLT2B3 LTR ERVL 3 72 -482 330 221 29 0 chr21 44899534 44899602 -7968 + MLT2B3 LTR ERVL 3 72 -482 344 191 29 0 chr21 44899627 44899695 -7875 + MLT2B3 LTR ERVL 3 72 -482 333 167 61 0 chr21 44899720 44899786 -7784 + MLT2B3 LTR ERVL 3 72 -482 417 147 29 0 chr21 44899811 44899879 -7691 + MLT2B3 LTR ERVL 3 72 -482 354 191 29 0 chr21 44899904 44899972 -7598 + MLT2B3 LTR ERVL 3 72 -482 354 191 29 0 chr21 44899997 44900065 -7505 + MLT2B3 LTR ERVL 3 72 -482 2206 179 165 35 chr21 44900090 44900224 -7346 + MLT2B3 LTR ERVL 3 118 -436 2224 144 41 6 chr21 44900224 44900586 -6984 + THE1C LTR MaLR 1 375 0 2206 179 165 35 chr21 44900586 44900937 -6633 + MLT2B3 LTR ERVL 118 551 -3 660 266 23 28 chr21 44900943 44901308 -6262 - MER72-int LTR ERV1 -3873 1063 620 * 906 257 59 44 chr21 44901283 44901621 -5949 - MER72-int LTR ERV1 -4421 515 173 3870 139 72 50 chr21 44902023 44902088 -5482 - MER72 LTR ERV1 0 722 660 2159 98 3 3 chr21 44902088 44902384 -5186 - AluSq SINE Alu -15 298 3 3870 139 72 50 chr21 44902384 44903024 -4546 - MER72 LTR ERV1 -62 660 1 556 255 21 16 chr21 44903233 44903421 -4149 - L1MC/D LINE L1 -2020 5765 5577 2739 164 54 16 chr21 44903426 44903982 -3588 - MER34C LTR ERV1 -2 583 7 1233 229 82 20 chr21 44903993 44904604 -2966 - L1MC/D LINE L1 -745 5401 4898 534 217 9 0 chr21 44904620 44904726 -2844 + LTR60 LTR ERV1 1 107 -479 2690 16 0 0 chr21 44904837 44905141 -2429 + AluYb8 SINE Alu 5 308 -10 978 171 97 129 chr21 44905141 44905545 -2025 + LTR60 LTR ERV1 159 549 -37 * 16742 32 14 0 chr21 44905389 44907428 -142 + TAR1 Satellite telomeric 2 2069 -42 1057 28 7 7 chr21 44907428 44907570 0 + (TTAGGG)n Simple_repeat Simple_repeat 1 142 0